Query 022946
Match_columns 289
No_of_seqs 259 out of 2414
Neff 9.3
Searched_HMMs 46136
Date Fri Mar 29 07:18:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022946.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/022946hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2900 Biotin synthase [Coenz 100.0 4.2E-49 9.1E-54 319.3 16.0 278 1-283 1-278 (380)
2 COG0502 BioB Biotin synthase a 100.0 2.1E-45 4.5E-50 316.7 24.4 234 50-287 11-246 (335)
3 PLN02389 biotin synthase 100.0 3.3E-42 7.1E-47 307.6 29.1 239 49-287 43-281 (379)
4 PRK15108 biotin synthase; Prov 100.0 3.4E-40 7.3E-45 292.9 29.5 237 49-287 3-239 (345)
5 PRK06256 biotin synthase; Vali 100.0 5.8E-38 1.3E-42 279.8 29.9 244 37-287 7-253 (336)
6 PRK08444 hypothetical protein; 100.0 4.6E-37 1E-41 272.4 24.5 236 40-288 3-260 (353)
7 PRK07094 biotin synthase; Prov 100.0 3.6E-36 7.8E-41 266.9 27.7 226 53-287 1-232 (323)
8 TIGR00433 bioB biotin syntheta 100.0 3.2E-34 6.9E-39 251.7 27.6 223 61-287 1-224 (296)
9 TIGR03700 mena_SCO4494 putativ 100.0 7.4E-35 1.6E-39 260.3 23.6 234 41-287 2-260 (351)
10 PRK09240 thiH thiamine biosynt 100.0 3.7E-34 8.1E-39 257.0 25.7 237 40-287 26-274 (371)
11 PRK07360 FO synthase subunit 2 100.0 2.9E-34 6.2E-39 258.0 24.6 240 34-284 4-268 (371)
12 PRK09613 thiH thiamine biosynt 100.0 1.4E-33 3.1E-38 257.1 28.6 240 36-284 32-289 (469)
13 PRK05926 hypothetical protein; 100.0 9.7E-34 2.1E-38 252.7 26.1 235 36-282 14-272 (370)
14 PRK08508 biotin synthase; Prov 100.0 2.4E-33 5.2E-38 242.8 23.7 195 84-282 2-198 (279)
15 TIGR03551 F420_cofH 7,8-dideme 100.0 2.1E-33 4.6E-38 250.4 23.7 222 53-283 1-245 (343)
16 TIGR02351 thiH thiazole biosyn 100.0 9.7E-33 2.1E-37 247.6 25.4 238 39-287 24-273 (366)
17 PRK05927 hypothetical protein; 100.0 3.1E-33 6.7E-38 247.9 21.0 226 49-283 3-251 (350)
18 TIGR03699 mena_SCO4550 menaqui 100.0 3.9E-32 8.5E-37 242.5 23.1 228 51-287 1-251 (340)
19 PRK08445 hypothetical protein; 100.0 4.8E-32 1E-36 240.8 23.3 222 51-283 2-248 (348)
20 PRK09234 fbiC FO synthase; Rev 100.0 7.4E-31 1.6E-35 254.0 27.6 246 34-287 11-289 (843)
21 PRK09234 fbiC FO synthase; Rev 100.0 5.7E-30 1.2E-34 247.9 25.6 232 38-281 475-730 (843)
22 PRK06267 hypothetical protein; 100.0 7.9E-29 1.7E-33 221.0 24.3 209 66-287 6-219 (350)
23 COG1060 ThiH Thiamine biosynth 100.0 3.1E-28 6.7E-33 215.9 21.8 239 37-285 8-269 (370)
24 TIGR03550 F420_cofG 7,8-dideme 100.0 2.2E-28 4.7E-33 216.2 18.9 197 88-288 4-221 (322)
25 TIGR00423 radical SAM domain p 100.0 8.1E-28 1.8E-32 211.7 20.0 187 88-283 5-212 (309)
26 PRK05481 lipoyl synthase; Prov 99.9 8.2E-26 1.8E-30 196.2 21.8 209 53-274 19-235 (289)
27 PRK06245 cofG FO synthase subu 99.9 8.9E-26 1.9E-30 201.3 20.6 198 83-287 5-224 (336)
28 PRK12928 lipoyl synthase; Prov 99.9 1.4E-25 3E-30 194.2 20.6 216 55-283 28-254 (290)
29 TIGR03471 HpnJ hopanoid biosyn 99.9 1.9E-25 4.2E-30 207.7 19.0 184 91-284 199-387 (472)
30 TIGR01579 MiaB-like-C MiaB-lik 99.9 2.3E-25 5E-30 203.9 18.2 191 90-287 140-343 (414)
31 PRK14340 (dimethylallyl)adenos 99.9 8.1E-25 1.8E-29 201.0 19.8 187 89-282 150-347 (445)
32 TIGR00510 lipA lipoate synthas 99.9 1.7E-24 3.7E-29 187.8 19.9 187 91-286 66-260 (302)
33 PRK14331 (dimethylallyl)adenos 99.9 8.5E-25 1.8E-29 201.1 19.1 189 89-284 147-346 (437)
34 PRK14327 (dimethylallyl)adenos 99.9 1.6E-24 3.4E-29 200.7 20.8 190 88-284 212-413 (509)
35 TIGR02026 BchE magnesium-proto 99.9 6.6E-25 1.4E-29 204.8 17.9 180 92-283 197-386 (497)
36 TIGR01125 MiaB-like tRNA modif 99.9 2E-24 4.3E-29 198.5 20.8 188 90-284 137-336 (430)
37 PRK14338 (dimethylallyl)adenos 99.9 2.3E-24 4.9E-29 199.1 20.5 189 89-284 156-356 (459)
38 PRK14325 (dimethylallyl)adenos 99.9 1.8E-24 3.8E-29 199.6 19.7 191 90-287 149-354 (444)
39 PRK14339 (dimethylallyl)adenos 99.9 2.4E-24 5.1E-29 196.8 20.0 192 89-287 128-335 (420)
40 PTZ00413 lipoate synthase; Pro 99.9 1.1E-23 2.4E-28 183.7 22.3 174 95-276 155-337 (398)
41 TIGR00089 RNA modification enz 99.9 2.1E-24 4.5E-29 198.5 18.6 188 90-284 141-340 (429)
42 TIGR01578 MiaB-like-B MiaB-lik 99.9 3.4E-24 7.4E-29 196.0 19.6 192 89-287 134-337 (420)
43 PRK14326 (dimethylallyl)adenos 99.9 4.1E-24 8.9E-29 198.8 20.3 188 90-284 159-358 (502)
44 PLN02428 lipoic acid synthase 99.9 1.1E-23 2.3E-28 184.8 21.3 175 90-273 104-285 (349)
45 PRK14335 (dimethylallyl)adenos 99.9 5.7E-24 1.2E-28 196.2 20.4 191 90-287 154-363 (455)
46 PRK14330 (dimethylallyl)adenos 99.9 6.2E-24 1.3E-28 195.3 20.0 186 90-282 142-339 (434)
47 PRK14328 (dimethylallyl)adenos 99.9 5.3E-24 1.1E-28 195.9 19.1 189 89-284 148-348 (439)
48 PRK14329 (dimethylallyl)adenos 99.9 6.5E-24 1.4E-28 196.3 19.6 186 90-282 170-372 (467)
49 PRK14336 (dimethylallyl)adenos 99.9 9.9E-24 2.1E-28 192.6 19.8 187 89-282 125-323 (418)
50 TIGR01574 miaB-methiolase tRNA 99.9 8.6E-24 1.9E-28 194.5 19.4 190 89-285 146-349 (438)
51 PRK08207 coproporphyrinogen II 99.9 2.4E-23 5.3E-28 192.3 22.1 225 51-283 120-369 (488)
52 PRK14332 (dimethylallyl)adenos 99.9 1.2E-23 2.6E-28 193.3 19.9 185 89-282 155-350 (449)
53 PRK14862 rimO ribosomal protei 99.9 2.6E-23 5.7E-28 191.0 20.7 187 90-284 141-347 (440)
54 PRK14334 (dimethylallyl)adenos 99.9 2.1E-23 4.6E-28 191.9 20.0 190 88-284 138-338 (440)
55 PRK14337 (dimethylallyl)adenos 99.9 2.7E-23 5.9E-28 191.4 20.5 192 89-287 149-354 (446)
56 smart00729 Elp3 Elongator prot 99.9 2.4E-23 5.2E-28 173.2 17.3 187 91-285 4-202 (216)
57 PRK14333 (dimethylallyl)adenos 99.9 1.8E-23 3.8E-28 192.8 17.7 189 89-284 149-356 (448)
58 COG0621 MiaB 2-methylthioadeni 99.9 7.5E-23 1.6E-27 184.0 18.0 194 88-288 144-351 (437)
59 PRK08446 coproporphyrinogen II 99.9 1.2E-22 2.7E-27 181.6 18.3 183 96-283 7-198 (350)
60 PRK05904 coproporphyrinogen II 99.9 9.1E-23 2E-27 182.1 16.9 185 96-283 13-203 (353)
61 PRK08599 coproporphyrinogen II 99.9 1.6E-22 3.4E-27 183.2 18.1 180 96-283 8-200 (377)
62 PRK05799 coproporphyrinogen II 99.9 2E-22 4.4E-27 182.3 17.2 182 96-282 10-198 (374)
63 TIGR00539 hemN_rel putative ox 99.9 5.2E-22 1.1E-26 178.6 18.2 183 96-283 7-200 (360)
64 PRK05660 HemN family oxidoredu 99.9 5.5E-22 1.2E-26 179.1 17.5 177 96-283 13-207 (378)
65 PRK07379 coproporphyrinogen II 99.9 1.1E-21 2.3E-26 178.4 19.4 185 96-283 17-215 (400)
66 PRK05628 coproporphyrinogen II 99.9 1.8E-21 3.8E-26 176.1 17.9 185 96-283 9-208 (375)
67 PRK09058 coproporphyrinogen II 99.9 2.1E-21 4.5E-26 179.0 17.9 182 96-282 68-262 (449)
68 PRK09057 coproporphyrinogen II 99.9 2.9E-21 6.2E-26 174.7 18.3 183 96-283 11-203 (380)
69 PLN02951 Molybderin biosynthes 99.9 1.5E-20 3.3E-25 168.9 22.0 188 83-282 54-246 (373)
70 PRK13361 molybdenum cofactor b 99.9 1.3E-20 2.8E-25 167.5 20.3 182 83-277 10-196 (329)
71 cd01335 Radical_SAM Radical SA 99.9 8.8E-21 1.9E-25 155.9 17.9 177 96-281 4-187 (204)
72 PRK06294 coproporphyrinogen II 99.9 5.2E-21 1.1E-25 172.3 17.9 179 96-283 13-203 (370)
73 TIGR01212 radical SAM protein, 99.9 9.9E-21 2.2E-25 165.8 18.8 199 75-283 7-226 (302)
74 PRK08898 coproporphyrinogen II 99.9 9.6E-21 2.1E-25 172.0 19.4 186 96-284 26-222 (394)
75 TIGR02666 moaA molybdenum cofa 99.9 2.2E-20 4.9E-25 166.5 20.7 187 83-280 6-198 (334)
76 PRK08208 coproporphyrinogen II 99.9 9.4E-21 2E-25 173.9 18.4 185 96-284 46-242 (430)
77 COG2896 MoaA Molybdenum cofact 99.9 2.3E-20 4.9E-25 161.1 19.5 183 83-277 7-193 (322)
78 PRK06582 coproporphyrinogen II 99.9 1.2E-20 2.7E-25 170.6 17.8 183 96-283 18-210 (390)
79 TIGR02668 moaA_archaeal probab 99.9 5.6E-20 1.2E-24 161.8 19.8 181 83-277 6-190 (302)
80 TIGR01210 conserved hypothetic 99.8 1.2E-19 2.7E-24 159.5 20.3 181 90-282 17-220 (313)
81 PRK00164 moaA molybdenum cofac 99.8 1.1E-19 2.4E-24 162.0 20.0 184 83-278 13-201 (331)
82 TIGR00538 hemN oxygen-independ 99.8 1.1E-19 2.3E-24 168.3 20.5 176 96-278 56-246 (455)
83 PRK13347 coproporphyrinogen II 99.8 2.6E-19 5.6E-24 165.4 18.9 175 96-277 57-246 (453)
84 PRK09249 coproporphyrinogen II 99.8 3.1E-19 6.7E-24 165.0 18.4 176 96-278 56-246 (453)
85 PF04055 Radical_SAM: Radical 99.8 1.7E-19 3.6E-24 143.9 14.0 156 93-257 2-166 (166)
86 PRK05301 pyrroloquinoline quin 99.8 9.2E-19 2E-23 158.7 20.3 173 89-274 17-193 (378)
87 COG0635 HemN Coproporphyrinoge 99.8 6.6E-19 1.4E-23 160.0 18.0 186 96-285 41-239 (416)
88 COG0320 LipA Lipoate synthase 99.8 8.9E-19 1.9E-23 144.9 17.0 170 95-273 76-251 (306)
89 TIGR02109 PQQ_syn_pqqE coenzym 99.8 2.2E-18 4.9E-23 155.2 20.3 172 90-274 9-184 (358)
90 PRK00955 hypothetical protein; 99.8 1.5E-18 3.3E-23 162.0 19.4 228 47-282 253-526 (620)
91 TIGR01211 ELP3 histone acetylt 99.8 6.9E-18 1.5E-22 156.4 22.5 193 86-282 66-307 (522)
92 PRK01254 hypothetical protein; 99.8 1.6E-18 3.5E-23 160.9 17.9 226 49-283 336-609 (707)
93 COG1032 Fe-S oxidoreductase [E 99.8 1.1E-18 2.4E-23 163.3 16.1 190 89-286 199-407 (490)
94 TIGR03470 HpnH hopanoid biosyn 99.8 9E-18 2E-22 148.3 20.9 201 65-279 4-207 (318)
95 PRK08629 coproporphyrinogen II 99.8 3.2E-17 6.9E-22 150.1 18.8 176 96-281 59-245 (433)
96 COG1856 Uncharacterized homolo 99.8 3.4E-17 7.4E-22 131.5 14.5 185 94-287 16-203 (275)
97 TIGR02493 PFLA pyruvate format 99.8 1.9E-16 4.1E-21 134.5 19.8 169 96-275 22-200 (235)
98 TIGR01290 nifB nitrogenase cof 99.7 3.1E-16 6.7E-21 143.7 20.7 182 92-281 28-236 (442)
99 COG2100 Predicted Fe-S oxidore 99.7 2E-16 4.3E-21 133.8 16.1 176 96-276 114-301 (414)
100 COG1242 Predicted Fe-S oxidore 99.7 4.1E-16 8.9E-21 129.6 16.5 201 71-282 9-230 (312)
101 COG1243 ELP3 Histone acetyltra 99.7 3E-16 6.5E-21 138.7 16.6 195 84-282 63-299 (515)
102 PRK11145 pflA pyruvate formate 99.7 1.6E-15 3.5E-20 129.6 19.0 172 96-278 27-208 (246)
103 PRK13762 tRNA-modifying enzyme 99.7 2.3E-15 4.9E-20 132.7 19.1 182 89-279 58-266 (322)
104 TIGR02495 NrdG2 anaerobic ribo 99.7 4.3E-15 9.2E-20 122.1 19.5 154 96-260 23-182 (191)
105 TIGR03822 AblA_like_2 lysine-2 99.7 2.7E-15 5.9E-20 132.5 15.9 173 91-283 91-278 (321)
106 PRK14459 ribosomal RNA large s 99.7 2.7E-14 5.9E-19 127.0 22.2 178 92-282 125-331 (373)
107 PRK14456 ribosomal RNA large s 99.6 1.7E-14 3.7E-19 128.8 19.6 175 91-281 124-324 (368)
108 PRK14460 ribosomal RNA large s 99.6 2.6E-14 5.7E-19 127.3 19.6 171 96-281 109-303 (354)
109 PRK13745 anaerobic sulfatase-m 99.6 5.2E-14 1.1E-18 128.9 20.0 182 89-275 14-206 (412)
110 PRK14468 ribosomal RNA large s 99.6 1.8E-13 4E-18 121.5 21.6 173 92-280 97-291 (343)
111 COG0731 Fe-S oxidoreductases [ 99.6 4.8E-14 1E-18 120.5 15.8 169 98-276 33-216 (296)
112 PRK14469 ribosomal RNA large s 99.6 2.1E-13 4.5E-18 121.7 20.5 170 92-277 105-293 (343)
113 PRK14455 ribosomal RNA large s 99.6 2.5E-13 5.4E-18 121.3 20.7 175 92-282 113-309 (356)
114 TIGR00048 radical SAM enzyme, 99.6 2.7E-13 5.9E-18 121.0 20.7 171 96-281 112-304 (355)
115 PRK13758 anaerobic sulfatase-m 99.6 1.6E-13 3.4E-18 124.3 18.9 166 96-271 12-193 (370)
116 PRK14470 ribosomal RNA large s 99.6 5.1E-13 1.1E-17 118.1 21.5 170 92-277 101-288 (336)
117 COG1180 PflA Pyruvate-formate 99.6 3E-13 6.4E-18 115.8 18.6 168 96-274 42-215 (260)
118 KOG2672 Lipoate synthase [Coen 99.6 3.8E-14 8.2E-19 117.5 12.1 176 90-274 113-295 (360)
119 PRK14463 ribosomal RNA large s 99.6 5.5E-13 1.2E-17 118.7 20.2 174 91-280 106-295 (349)
120 PRK14466 ribosomal RNA large s 99.6 6.3E-13 1.4E-17 117.1 20.3 172 96-282 110-297 (345)
121 COG0535 Predicted Fe-S oxidore 99.6 3E-13 6.5E-18 121.1 18.1 172 91-276 22-199 (347)
122 PRK14467 ribosomal RNA large s 99.5 1.4E-12 3E-17 115.8 21.1 176 91-281 102-300 (348)
123 COG0641 AslB Arylsulfatase reg 99.5 4.8E-13 1.1E-17 119.8 18.1 168 96-278 14-198 (378)
124 TIGR03278 methan_mark_10 putat 99.5 9.9E-13 2.1E-17 118.7 19.2 147 120-275 52-208 (404)
125 PRK14457 ribosomal RNA large s 99.5 2.4E-12 5.3E-17 114.2 20.4 171 96-281 108-301 (345)
126 COG1031 Uncharacterized Fe-S o 99.5 1.3E-12 2.8E-17 115.5 17.8 206 71-283 167-414 (560)
127 PRK14462 ribosomal RNA large s 99.5 2.7E-12 5.7E-17 114.0 19.6 172 96-282 117-310 (356)
128 COG2516 Biotin synthase-relate 99.5 4.3E-13 9.3E-18 113.9 12.5 182 96-287 38-238 (339)
129 PRK14464 ribosomal RNA large s 99.5 4.4E-12 9.6E-17 111.8 17.2 178 91-284 99-291 (344)
130 TIGR00238 KamA family protein. 99.5 4.2E-12 9E-17 112.7 16.9 167 91-279 116-297 (331)
131 PRK14454 ribosomal RNA large s 99.4 2E-11 4.4E-16 108.4 20.6 174 92-281 105-297 (342)
132 PRK14465 ribosomal RNA large s 99.4 2.1E-11 4.7E-16 107.6 20.5 164 96-274 112-294 (342)
133 PRK11194 ribosomal RNA large s 99.4 2.3E-11 5.1E-16 108.7 20.7 171 96-281 110-308 (372)
134 TIGR03820 lys_2_3_AblA lysine- 99.4 1.4E-11 3.1E-16 110.9 19.4 173 91-282 111-295 (417)
135 PRK14461 ribosomal RNA large s 99.4 3.1E-11 6.7E-16 106.7 20.8 176 96-283 114-325 (371)
136 PRK14453 chloramphenicol/florf 99.4 3E-11 6.4E-16 107.4 19.1 175 92-279 104-297 (347)
137 TIGR03821 AblA_like_1 lysine-2 99.4 1.2E-11 2.7E-16 109.1 15.7 172 92-280 100-281 (321)
138 TIGR02494 PFLE_PFLC glycyl-rad 99.4 1.6E-11 3.6E-16 107.7 15.8 151 122-280 106-264 (295)
139 KOG4355 Predicted Fe-S oxidore 99.4 5E-12 1.1E-16 109.5 11.8 191 90-287 189-392 (547)
140 COG4277 Predicted DNA-binding 99.4 9.7E-12 2.1E-16 104.5 11.6 183 95-286 60-269 (404)
141 KOG2492 CDK5 activator-binding 99.3 1.7E-11 3.7E-16 107.0 12.7 186 90-282 222-442 (552)
142 TIGR03365 Bsubt_queE 7-cyano-7 99.3 1.5E-10 3.2E-15 98.2 17.4 130 96-242 29-160 (238)
143 COG2108 Uncharacterized conser 99.3 1.9E-10 4.2E-15 98.1 14.6 170 78-272 22-201 (353)
144 COG0820 Predicted Fe-S-cluster 99.2 1.3E-09 2.9E-14 95.1 18.1 172 96-282 108-302 (349)
145 COG5014 Predicted Fe-S oxidore 99.2 3.6E-10 7.8E-15 87.8 12.6 167 95-269 47-221 (228)
146 KOG2876 Molybdenum cofactor bi 99.2 1.6E-11 3.5E-16 101.5 4.9 177 92-281 15-198 (323)
147 PRK10076 pyruvate formate lyas 99.2 2.6E-09 5.6E-14 88.8 17.9 145 121-275 18-170 (213)
148 COG1244 Predicted Fe-S oxidore 99.1 2.2E-08 4.7E-13 85.7 18.5 183 95-282 53-255 (358)
149 COG1533 SplB DNA repair photol 99.1 1.3E-08 2.8E-13 88.6 17.6 169 91-261 32-212 (297)
150 PF13353 Fer4_12: 4Fe-4S singl 99.0 7.7E-10 1.7E-14 86.0 6.1 101 96-204 12-117 (139)
151 COG1313 PflX Uncharacterized F 98.8 9.2E-08 2E-12 80.7 13.4 153 97-260 126-283 (335)
152 PF13394 Fer4_14: 4Fe-4S singl 98.7 7.7E-08 1.7E-12 72.6 6.8 82 96-185 5-94 (119)
153 TIGR02826 RNR_activ_nrdG3 anae 98.6 1E-06 2.2E-11 68.9 11.1 96 96-202 22-117 (147)
154 KOG2535 RNA polymerase II elon 98.5 1.9E-06 4.2E-11 74.4 13.0 111 172-282 224-337 (554)
155 COG1509 KamA Lysine 2,3-aminom 98.5 2.6E-06 5.7E-11 74.4 14.0 173 91-279 114-296 (369)
156 COG1625 Fe-S oxidoreductase, r 98.5 1.4E-06 3E-11 77.5 10.5 173 96-281 34-222 (414)
157 TIGR02491 NrdG anaerobic ribon 98.4 4.9E-06 1.1E-10 65.8 11.2 85 96-188 22-112 (154)
158 PRK11121 nrdG anaerobic ribonu 98.4 4.7E-06 1E-10 65.9 10.1 84 96-187 23-113 (154)
159 COG1964 Predicted Fe-S oxidore 98.3 2.1E-05 4.6E-10 70.5 14.0 142 122-278 91-243 (475)
160 cd03174 DRE_TIM_metallolyase D 98.3 4.2E-05 9.1E-10 65.9 15.6 142 120-269 14-165 (265)
161 COG0602 NrdG Organic radical a 98.1 9.1E-06 2E-10 67.6 7.5 83 96-185 29-113 (212)
162 TIGR03279 cyano_FeS_chp putati 98.0 6.8E-05 1.5E-09 68.0 10.8 104 178-282 122-229 (433)
163 cd07948 DRE_TIM_HCS Saccharomy 97.7 0.0021 4.6E-08 55.3 15.4 138 120-268 17-159 (262)
164 cd07939 DRE_TIM_NifV Streptomy 97.7 0.0032 7E-08 54.2 16.1 139 120-269 15-158 (259)
165 TIGR03217 4OH_2_O_val_ald 4-hy 97.7 0.0035 7.6E-08 55.9 16.1 135 122-269 21-162 (333)
166 cd07944 DRE_TIM_HOA_like 4-hyd 97.6 0.0064 1.4E-07 52.5 16.3 136 121-269 16-157 (266)
167 TIGR02090 LEU1_arch isopropylm 97.6 0.0045 9.8E-08 56.0 15.9 139 120-269 17-160 (363)
168 PF00682 HMGL-like: HMGL-like 97.5 0.00098 2.1E-08 56.5 10.7 142 122-269 11-156 (237)
169 PRK11858 aksA trans-homoaconit 97.5 0.0042 9.1E-08 56.5 15.4 139 120-269 21-164 (378)
170 PRK08195 4-hyroxy-2-oxovalerat 97.4 0.011 2.4E-07 52.8 16.0 135 122-269 22-163 (337)
171 cd07943 DRE_TIM_HOA 4-hydroxy- 97.4 0.016 3.5E-07 49.9 16.0 131 121-269 18-160 (263)
172 TIGR02660 nifV_homocitr homoci 97.3 0.011 2.4E-07 53.5 15.1 138 120-268 18-160 (365)
173 cd07940 DRE_TIM_IPMS 2-isoprop 97.2 0.03 6.4E-07 48.5 16.0 138 121-269 16-162 (268)
174 PRK05692 hydroxymethylglutaryl 97.1 0.03 6.5E-07 48.9 15.1 144 120-269 21-174 (287)
175 PLN02746 hydroxymethylglutaryl 97.1 0.03 6.5E-07 50.1 15.2 144 120-269 63-216 (347)
176 cd07941 DRE_TIM_LeuA3 Desulfob 97.1 0.067 1.5E-06 46.4 17.2 139 120-268 15-169 (273)
177 PRK09389 (R)-citramalate synth 96.9 0.054 1.2E-06 50.9 15.3 138 120-268 19-161 (488)
178 cd07938 DRE_TIM_HMGL 3-hydroxy 96.8 0.06 1.3E-06 46.7 14.0 144 120-269 15-168 (274)
179 PRK00915 2-isopropylmalate syn 96.8 0.035 7.6E-07 52.6 13.5 139 121-268 22-167 (513)
180 cd07945 DRE_TIM_CMS Leptospira 96.6 0.16 3.5E-06 44.2 15.5 142 120-269 14-166 (280)
181 cd00739 DHPS DHPS subgroup of 96.4 0.32 7E-06 41.7 15.8 137 121-259 20-193 (257)
182 cd07937 DRE_TIM_PC_TC_5S Pyruv 96.3 0.21 4.5E-06 43.4 14.6 135 121-269 17-168 (275)
183 PRK08091 ribulose-phosphate 3- 96.2 0.13 2.9E-06 43.1 11.9 127 123-274 23-151 (228)
184 PRK11613 folP dihydropteroate 96.1 0.86 1.9E-05 39.6 17.5 146 122-270 35-219 (282)
185 PRK12331 oxaloacetate decarbox 95.9 0.45 9.8E-06 44.2 15.3 136 121-269 22-173 (448)
186 TIGR00977 LeuA_rel 2-isopropyl 95.8 0.45 9.6E-06 45.3 14.9 143 120-269 18-173 (526)
187 PRK12344 putative alpha-isopro 95.7 0.46 1E-05 45.2 15.0 139 120-268 22-176 (524)
188 PRK12330 oxaloacetate decarbox 95.7 0.44 9.6E-06 44.7 14.4 134 121-268 23-173 (499)
189 TIGR00973 leuA_bact 2-isopropy 95.6 0.31 6.8E-06 46.0 13.1 139 121-268 19-164 (494)
190 PLN03228 methylthioalkylmalate 95.5 0.67 1.5E-05 43.7 15.0 143 120-268 101-257 (503)
191 COG0119 LeuA Isopropylmalate/h 95.5 0.62 1.3E-05 42.8 14.3 133 120-260 19-158 (409)
192 PRK14041 oxaloacetate decarbox 95.5 0.54 1.2E-05 43.9 14.0 130 121-268 21-171 (467)
193 PRK14040 oxaloacetate decarbox 95.4 0.98 2.1E-05 43.6 16.0 135 121-269 23-174 (593)
194 PRK08005 epimerase; Validated 95.2 1.2 2.6E-05 37.0 13.9 97 123-235 11-109 (210)
195 TIGR01496 DHPS dihydropteroate 95.1 1.9 4.1E-05 37.0 16.1 139 120-260 18-192 (257)
196 TIGR01108 oadA oxaloacetate de 95.1 1.1 2.3E-05 43.2 15.2 134 121-268 17-167 (582)
197 PRK09282 pyruvate carboxylase 95.0 1.1 2.4E-05 43.3 15.0 135 121-268 22-172 (592)
198 PRK12581 oxaloacetate decarbox 94.9 1.5 3.2E-05 40.9 15.2 133 122-268 32-181 (468)
199 PRK14057 epimerase; Provisiona 94.8 0.85 1.9E-05 38.9 12.1 127 123-274 30-165 (254)
200 cd00423 Pterin_binding Pterin 94.7 1.8 3.8E-05 37.2 14.4 135 122-258 21-192 (258)
201 PRK09722 allulose-6-phosphate 94.7 1.9 4.2E-05 36.3 14.1 97 123-235 13-111 (229)
202 PRK14024 phosphoribosyl isomer 94.6 1.5 3.3E-05 37.2 13.5 74 127-205 34-108 (241)
203 cd00003 PNPsynthase Pyridoxine 94.6 0.31 6.6E-06 40.8 8.8 120 124-255 72-201 (234)
204 TIGR03128 RuMP_HxlA 3-hexulose 94.5 0.95 2.1E-05 37.3 11.8 94 122-236 9-106 (206)
205 COG0084 TatD Mg-dependent DNas 94.5 0.037 8E-07 47.4 3.3 49 19-70 205-254 (256)
206 PRK08883 ribulose-phosphate 3- 94.5 2.4 5.3E-05 35.4 14.2 98 123-235 10-109 (220)
207 PF03740 PdxJ: Pyridoxal phosp 94.5 0.29 6.3E-06 41.1 8.4 117 124-251 73-200 (239)
208 TIGR00559 pdxJ pyridoxine 5'-p 94.4 0.37 8.1E-06 40.3 9.0 119 124-254 72-200 (237)
209 PRK08745 ribulose-phosphate 3- 94.4 2.4 5.2E-05 35.6 14.0 97 123-235 14-113 (223)
210 PRK13753 dihydropteroate synth 94.0 3.7 8.1E-05 35.6 15.5 77 121-199 21-101 (279)
211 PRK05265 pyridoxine 5'-phospha 93.9 0.62 1.3E-05 39.1 9.2 116 124-252 75-200 (239)
212 cd04731 HisF The cyclase subun 93.6 1.6 3.5E-05 37.0 11.8 132 126-273 28-172 (243)
213 PRK14042 pyruvate carboxylase 93.6 4 8.6E-05 39.5 15.4 133 122-268 23-172 (596)
214 COG0036 Rpe Pentose-5-phosphat 93.6 0.7 1.5E-05 38.4 8.9 80 123-204 14-94 (220)
215 PF00834 Ribul_P_3_epim: Ribul 93.4 0.63 1.4E-05 38.4 8.6 127 124-274 11-138 (201)
216 PLN02321 2-isopropylmalate syn 93.3 4.2 9E-05 39.6 15.1 143 120-268 103-258 (632)
217 PRK00748 1-(5-phosphoribosyl)- 93.3 2.5 5.5E-05 35.4 12.4 74 128-205 33-107 (233)
218 TIGR01303 IMP_DH_rel_1 IMP deh 92.9 1.4 3.1E-05 41.3 11.1 120 125-255 224-348 (475)
219 PTZ00170 D-ribulose-5-phosphat 92.8 2.2 4.7E-05 36.0 11.2 101 123-236 17-118 (228)
220 PF05913 DUF871: Bacterial pro 92.7 0.22 4.8E-06 44.8 5.3 146 123-276 12-179 (357)
221 cd01299 Met_dep_hydrolase_A Me 92.7 4 8.6E-05 36.3 13.4 79 122-202 117-201 (342)
222 TIGR00007 phosphoribosylformim 92.6 4.5 9.9E-05 33.8 13.0 73 128-204 31-104 (230)
223 COG0826 Collagenase and relate 92.6 0.79 1.7E-05 41.1 8.6 83 183-270 15-99 (347)
224 cd00331 IGPS Indole-3-glycerol 92.5 3.8 8.3E-05 34.0 12.2 75 122-203 28-103 (217)
225 cd04732 HisA HisA. Phosphorib 92.4 2.5 5.3E-05 35.5 11.2 75 126-204 30-105 (234)
226 TIGR02146 LysS_fung_arch homoc 92.3 7.8 0.00017 34.5 16.5 138 122-268 17-157 (344)
227 COG0106 HisA Phosphoribosylfor 92.3 1.4 3E-05 37.2 9.1 74 128-204 34-107 (241)
228 TIGR01769 GGGP geranylgeranylg 92.2 2.4 5.1E-05 35.1 10.3 76 120-201 129-205 (205)
229 PRK15452 putative protease; Pr 92.2 0.93 2E-05 42.1 8.8 90 174-270 5-96 (443)
230 COG2875 CobM Precorrin-4 methy 92.2 4.4 9.5E-05 34.0 11.7 116 122-243 59-229 (254)
231 COG0269 SgbH 3-hexulose-6-phos 92.1 6 0.00013 32.8 12.5 122 122-271 13-138 (217)
232 PRK13587 1-(5-phosphoribosyl)- 92.0 1.8 3.9E-05 36.6 9.7 72 130-205 36-109 (234)
233 TIGR03572 WbuZ glycosyl amidat 91.9 4.6 0.0001 33.9 12.1 73 128-204 33-106 (232)
234 PF07745 Glyco_hydro_53: Glyco 91.8 7.1 0.00015 34.9 13.6 137 132-271 31-206 (332)
235 cd07947 DRE_TIM_Re_CS Clostrid 91.7 5.8 0.00013 34.5 12.7 109 122-239 18-135 (279)
236 PRK06015 keto-hydroxyglutarate 91.6 2.9 6.2E-05 34.5 10.1 68 122-199 13-81 (201)
237 COG3589 Uncharacterized conser 91.5 9.6 0.00021 33.8 14.3 149 123-278 14-182 (360)
238 COG2185 Sbm Methylmalonyl-CoA 91.4 3.6 7.8E-05 31.8 9.8 70 122-200 50-121 (143)
239 PRK14114 1-(5-phosphoribosyl)- 91.3 2.3 5.1E-05 36.1 9.7 76 126-205 31-106 (241)
240 TIGR01182 eda Entner-Doudoroff 91.3 3.6 7.8E-05 34.0 10.5 67 122-198 17-84 (204)
241 PF01208 URO-D: Uroporphyrinog 91.2 4.6 0.0001 36.0 12.1 112 130-243 187-320 (343)
242 cd04724 Tryptophan_synthase_al 91.0 8.9 0.00019 32.5 16.0 78 123-200 12-110 (242)
243 TIGR00640 acid_CoA_mut_C methy 91.0 3.3 7.2E-05 31.6 9.4 69 122-200 40-111 (132)
244 PF09370 TIM-br_sig_trns: TIM- 90.9 0.65 1.4E-05 39.6 5.9 97 158-258 136-238 (268)
245 PRK13397 3-deoxy-7-phosphohept 90.9 8.2 0.00018 32.9 12.5 106 123-233 27-150 (250)
246 TIGR02129 hisA_euk phosphoribo 90.7 1.7 3.6E-05 37.1 8.2 65 128-202 41-105 (253)
247 TIGR00284 dihydropteroate synt 90.7 7.8 0.00017 36.6 13.3 124 125-258 165-304 (499)
248 cd07942 DRE_TIM_LeuA Mycobacte 90.7 11 0.00023 32.9 15.7 133 119-260 17-168 (284)
249 PRK07114 keto-hydroxyglutarate 90.5 8.9 0.00019 32.1 12.2 72 122-199 24-96 (222)
250 COG0107 HisF Imidazoleglycerol 90.4 2.6 5.6E-05 35.3 8.7 78 123-204 28-106 (256)
251 TIGR03586 PseI pseudaminic aci 90.4 13 0.00027 33.2 14.5 109 123-233 15-161 (327)
252 KOG1160 Fe-S oxidoreductase [E 90.4 2.6 5.7E-05 38.5 9.4 102 153-258 363-470 (601)
253 PRK13585 1-(5-phosphoribosyl)- 90.0 8.3 0.00018 32.5 12.1 74 127-204 34-108 (241)
254 PRK01033 imidazole glycerol ph 89.9 9.7 0.00021 32.7 12.4 72 128-203 33-105 (258)
255 TIGR00735 hisF imidazoleglycer 89.9 3 6.5E-05 35.7 9.3 74 128-205 33-107 (254)
256 TIGR01305 GMP_reduct_1 guanosi 89.8 4.9 0.00011 35.7 10.5 100 129-235 110-215 (343)
257 PF00977 His_biosynth: Histidi 89.8 1 2.2E-05 38.0 6.2 77 122-205 29-106 (229)
258 PRK13586 1-(5-phosphoribosyl)- 89.7 4.1 8.9E-05 34.4 9.8 75 126-205 31-106 (232)
259 PRK07807 inosine 5-monophospha 89.6 5.2 0.00011 37.7 11.2 120 125-255 226-350 (479)
260 PF05853 DUF849: Prokaryotic p 89.5 4.7 0.0001 34.9 10.2 112 122-235 23-142 (272)
261 PRK05096 guanosine 5'-monophos 89.4 6.6 0.00014 35.0 10.9 100 130-237 112-218 (346)
262 PF04481 DUF561: Protein of un 89.3 12 0.00025 31.2 13.2 126 122-268 24-150 (242)
263 COG0269 SgbH 3-hexulose-6-phos 89.0 12 0.00026 31.1 12.2 104 131-253 73-181 (217)
264 PLN02540 methylenetetrahydrofo 89.0 18 0.0004 34.7 14.4 49 122-170 70-123 (565)
265 PF00809 Pterin_bind: Pterin b 88.8 6 0.00013 32.8 10.0 137 122-260 16-191 (210)
266 PRK02083 imidazole glycerol ph 88.8 4.2 9.1E-05 34.7 9.4 73 128-204 33-106 (253)
267 cd00958 DhnA Class I fructose- 88.7 12 0.00027 31.3 12.1 79 123-202 74-164 (235)
268 KOG3111 D-ribulose-5-phosphate 88.5 4.5 9.8E-05 32.9 8.5 81 123-205 15-98 (224)
269 TIGR03849 arch_ComA phosphosul 88.5 14 0.00031 31.2 13.8 40 187-235 77-116 (237)
270 PLN02617 imidazole glycerol ph 88.4 12 0.00027 35.7 12.9 82 123-205 265-358 (538)
271 COG0800 Eda 2-keto-3-deoxy-6-p 88.4 5.1 0.00011 33.1 9.1 68 122-199 22-90 (211)
272 PRK04128 1-(5-phosphoribosyl)- 88.4 4.7 0.0001 33.9 9.2 82 123-211 31-113 (228)
273 COG5016 Pyruvate/oxaloacetate 88.3 13 0.00029 33.8 12.2 76 118-200 91-175 (472)
274 cd06543 GH18_PF-ChiA-like PF-C 88.3 13 0.00027 32.7 12.1 109 159-273 54-180 (294)
275 PF01136 Peptidase_U32: Peptid 88.2 4.5 9.8E-05 33.9 9.2 71 125-208 2-75 (233)
276 cd02071 MM_CoA_mut_B12_BD meth 87.9 9.4 0.0002 28.5 10.2 69 122-200 37-108 (122)
277 PRK14847 hypothetical protein; 87.9 19 0.00042 32.1 13.2 115 120-243 49-178 (333)
278 PTZ00124 adenosine deaminase; 87.9 6.5 0.00014 35.6 10.3 79 122-205 174-257 (362)
279 PRK06552 keto-hydroxyglutarate 87.8 11 0.00023 31.4 10.9 68 122-199 22-93 (213)
280 PRK07535 methyltetrahydrofolat 87.8 17 0.00036 31.3 13.1 132 122-259 22-182 (261)
281 COG5016 Pyruvate/oxaloacetate 87.8 5 0.00011 36.4 9.3 135 122-269 25-175 (472)
282 PRK10550 tRNA-dihydrouridine s 87.8 8.4 0.00018 34.1 10.8 100 124-227 147-255 (312)
283 cd07937 DRE_TIM_PC_TC_5S Pyruv 87.7 3 6.5E-05 36.2 7.9 99 122-234 146-250 (275)
284 PF00478 IMPDH: IMP dehydrogen 87.7 5.3 0.00011 35.9 9.5 116 128-254 110-230 (352)
285 TIGR03217 4OH_2_O_val_ald 4-hy 87.6 6.5 0.00014 35.1 10.1 78 122-205 140-224 (333)
286 PRK13307 bifunctional formalde 87.1 13 0.00029 33.9 11.8 122 122-271 182-307 (391)
287 TIGR03569 NeuB_NnaB N-acetylne 87.0 11 0.00024 33.6 11.1 109 123-233 14-160 (329)
288 PRK13523 NADPH dehydrogenase N 86.9 3.4 7.3E-05 37.0 7.9 79 123-201 225-305 (337)
289 cd04723 HisA_HisF Phosphoribos 86.9 5.9 0.00013 33.4 9.0 75 126-205 36-111 (233)
290 PRK14041 oxaloacetate decarbox 86.9 17 0.00037 34.1 12.7 99 122-234 150-254 (467)
291 COG0854 PdxJ Pyridoxal phospha 86.8 8.2 0.00018 32.1 9.2 80 157-237 109-191 (243)
292 KOG0564 5,10-methylenetetrahyd 86.8 6 0.00013 36.8 9.3 120 122-256 89-231 (590)
293 COG0685 MetF 5,10-methylenetet 86.7 15 0.00033 32.1 11.7 49 122-170 89-138 (291)
294 cd02803 OYE_like_FMN_family Ol 86.6 5.9 0.00013 35.1 9.4 80 122-201 225-311 (327)
295 cd07944 DRE_TIM_HOA_like 4-hyd 86.6 9.7 0.00021 32.8 10.3 23 123-145 136-158 (266)
296 PLN02591 tryptophan synthase 86.5 20 0.00042 30.7 12.5 81 122-202 115-219 (250)
297 CHL00200 trpA tryptophan synth 86.4 11 0.00023 32.6 10.4 81 122-202 128-232 (263)
298 PLN02446 (5-phosphoribosyl)-5- 86.4 3.4 7.4E-05 35.5 7.3 67 128-202 46-112 (262)
299 KOG2550 IMP dehydrogenase/GMP 86.3 5.3 0.00011 36.3 8.5 101 130-237 255-359 (503)
300 cd07943 DRE_TIM_HOA 4-hydroxy- 85.9 11 0.00025 32.3 10.5 78 122-205 138-221 (263)
301 PF01081 Aldolase: KDPG and KH 85.7 3.7 8.1E-05 33.7 6.9 68 122-199 17-85 (196)
302 PRK13396 3-deoxy-7-phosphohept 85.5 23 0.0005 31.9 12.3 106 123-233 113-236 (352)
303 TIGR03572 WbuZ glycosyl amidat 85.4 5.7 0.00012 33.3 8.2 71 127-201 155-227 (232)
304 COG2089 SpsE Sialic acid synth 85.3 26 0.00056 31.0 13.3 110 123-234 28-175 (347)
305 PTZ00314 inosine-5'-monophosph 85.3 16 0.00035 34.6 11.9 118 124-255 240-364 (495)
306 PF01729 QRPTase_C: Quinolinat 85.1 6 0.00013 31.7 7.7 66 123-202 89-156 (169)
307 PRK10812 putative DNAse; Provi 85.1 1.2 2.6E-05 38.4 4.0 49 19-70 205-254 (265)
308 PRK11572 copper homeostasis pr 85.0 23 0.0005 30.2 13.7 115 123-254 71-188 (248)
309 PF04131 NanE: Putative N-acet 84.8 16 0.00036 29.7 10.0 109 129-255 55-164 (192)
310 TIGR00007 phosphoribosylformim 84.8 10 0.00023 31.6 9.6 69 129-201 149-218 (230)
311 TIGR01919 hisA-trpF 1-(5-phosp 84.5 12 0.00025 31.9 9.7 76 123-205 32-107 (243)
312 TIGR01163 rpe ribulose-phospha 84.5 21 0.00045 29.2 12.3 79 122-203 8-88 (210)
313 TIGR00676 fadh2 5,10-methylene 84.4 26 0.00056 30.3 12.5 50 122-171 70-122 (272)
314 COG2896 MoaA Molybdenum cofact 84.4 29 0.00062 30.9 12.2 110 122-244 74-192 (322)
315 TIGR00736 nifR3_rel_arch TIM-b 84.4 24 0.00052 29.8 13.2 133 128-273 32-171 (231)
316 PRK12999 pyruvate carboxylase; 84.1 44 0.00096 35.3 15.3 134 121-268 551-709 (1146)
317 PF02679 ComA: (2R)-phospho-3- 84.0 19 0.00042 30.6 10.6 19 184-202 87-105 (244)
318 COG0159 TrpA Tryptophan syntha 83.4 23 0.0005 30.5 10.9 61 174-234 20-94 (265)
319 COG0159 TrpA Tryptophan syntha 83.4 29 0.00062 29.9 14.3 126 122-256 76-226 (265)
320 PRK11858 aksA trans-homoaconit 83.2 36 0.00078 31.0 13.0 78 122-205 142-224 (378)
321 PRK13585 1-(5-phosphoribosyl)- 83.2 11 0.00025 31.6 9.2 71 128-202 152-223 (241)
322 cd02810 DHOD_DHPD_FMN Dihydroo 83.0 12 0.00027 32.4 9.6 80 122-201 173-272 (289)
323 TIGR00735 hisF imidazoleglycer 83.0 17 0.00036 31.1 10.2 97 125-235 155-253 (254)
324 COG1751 Uncharacterized conser 82.9 21 0.00044 28.0 12.4 110 123-241 11-132 (186)
325 TIGR00262 trpA tryptophan synt 82.9 29 0.00063 29.7 14.9 135 123-260 22-196 (256)
326 PRK09282 pyruvate carboxylase 82.8 28 0.00061 33.8 12.5 94 122-226 151-250 (592)
327 cd00959 DeoC 2-deoxyribose-5-p 82.6 10 0.00023 31.1 8.5 74 123-200 129-202 (203)
328 PF01207 Dus: Dihydrouridine s 82.5 4.7 0.0001 35.6 6.8 86 187-274 72-162 (309)
329 cd00381 IMPDH IMPDH: The catal 82.4 36 0.00077 30.3 12.3 67 128-202 96-164 (325)
330 TIGR01037 pyrD_sub1_fam dihydr 82.2 14 0.0003 32.4 9.6 104 123-234 167-290 (300)
331 PRK12331 oxaloacetate decarbox 82.2 22 0.00047 33.3 11.2 78 122-205 151-233 (448)
332 cd04738 DHOD_2_like Dihydrooro 82.1 12 0.00027 33.2 9.3 79 122-201 213-309 (327)
333 cd02810 DHOD_DHPD_FMN Dihydroo 82.1 17 0.00038 31.5 10.2 79 123-201 109-196 (289)
334 PRK00915 2-isopropylmalate syn 81.9 18 0.0004 34.4 10.8 22 123-144 147-168 (513)
335 PRK05286 dihydroorotate dehydr 81.8 9.3 0.0002 34.3 8.5 79 122-201 222-318 (344)
336 TIGR00620 sporelyase spore pho 81.7 19 0.00041 29.6 9.4 78 182-260 34-115 (199)
337 PRK14042 pyruvate carboxylase 81.5 37 0.00081 33.0 12.7 100 122-235 151-256 (596)
338 cd02911 arch_FMN Archeal FMN-b 81.5 31 0.00067 29.1 13.6 126 130-271 40-173 (233)
339 PRK13957 indole-3-glycerol-pho 81.4 17 0.00037 31.0 9.4 93 122-235 61-154 (247)
340 PRK08195 4-hyroxy-2-oxovalerat 81.4 22 0.00047 31.9 10.6 78 122-205 141-225 (337)
341 PRK12330 oxaloacetate decarbox 81.1 51 0.0011 31.3 13.2 100 122-235 152-259 (499)
342 cd00537 MTHFR Methylenetetrahy 80.5 37 0.0008 29.3 13.0 49 122-170 70-123 (274)
343 COG2513 PrpB PEP phosphonomuta 80.4 15 0.00032 32.0 8.6 42 187-228 220-268 (289)
344 PRK12581 oxaloacetate decarbox 80.4 46 0.001 31.3 12.6 100 122-235 160-265 (468)
345 cd07939 DRE_TIM_NifV Streptomy 80.4 8.1 0.00017 33.1 7.3 23 123-145 137-159 (259)
346 cd00452 KDPG_aldolase KDPG and 80.3 30 0.00064 28.0 13.6 70 122-201 13-83 (190)
347 PRK00507 deoxyribose-phosphate 80.2 20 0.00044 30.0 9.4 76 122-201 133-208 (221)
348 PRK05692 hydroxymethylglutaryl 80.2 7.4 0.00016 34.0 7.1 121 122-259 152-280 (287)
349 COG2876 AroA 3-deoxy-D-arabino 80.1 32 0.0007 29.5 10.4 105 123-232 57-179 (286)
350 COG0826 Collagenase and relate 80.0 14 0.0003 33.3 8.8 127 128-257 16-159 (347)
351 PRK00278 trpC indole-3-glycero 80.0 38 0.00082 29.1 14.4 70 128-204 73-143 (260)
352 PF00682 HMGL-like: HMGL-like 80.0 14 0.0003 31.0 8.6 23 123-145 135-157 (237)
353 PF10566 Glyco_hydro_97: Glyco 79.9 31 0.00067 29.9 10.6 107 122-237 29-155 (273)
354 PRK09140 2-dehydro-3-deoxy-6-p 79.9 33 0.00071 28.3 13.0 73 122-204 19-93 (206)
355 cd03412 CbiK_N Anaerobic cobal 79.9 24 0.00051 26.7 10.1 65 182-258 57-124 (127)
356 TIGR03849 arch_ComA phosphosul 79.9 36 0.00078 28.8 11.0 102 122-234 38-149 (237)
357 COG1902 NemA NADH:flavin oxido 79.9 16 0.00035 33.1 9.2 83 122-204 234-321 (363)
358 cd04735 OYE_like_4_FMN Old yel 79.7 12 0.00026 33.7 8.5 92 123-214 233-328 (353)
359 TIGR01108 oadA oxaloacetate de 79.6 23 0.00049 34.3 10.7 78 122-205 146-228 (582)
360 cd04731 HisF The cyclase subun 79.4 13 0.00029 31.4 8.3 73 125-201 149-223 (243)
361 cd02932 OYE_YqiM_FMN Old yello 79.2 13 0.00028 33.2 8.5 30 172-201 290-320 (336)
362 PRK05848 nicotinate-nucleotide 79.2 16 0.00035 31.7 8.7 45 157-202 212-258 (273)
363 PF03102 NeuB: NeuB family; I 79.2 19 0.00041 30.6 9.0 40 159-200 56-95 (241)
364 COG1856 Uncharacterized homolo 79.1 37 0.00081 28.5 11.9 107 157-268 134-250 (275)
365 TIGR00736 nifR3_rel_arch TIM-b 78.9 19 0.00041 30.4 8.8 71 125-201 148-220 (231)
366 TIGR01302 IMP_dehydrog inosine 78.6 22 0.00048 33.2 10.1 128 125-271 223-357 (450)
367 PF14871 GHL6: Hypothetical gl 78.6 4.2 9.1E-05 31.1 4.4 60 184-243 3-68 (132)
368 PRK10425 DNase TatD; Provision 78.5 2 4.4E-05 36.8 3.0 48 19-69 203-255 (258)
369 TIGR00677 fadh2_euk methylenet 78.5 44 0.00096 29.1 12.7 48 123-170 72-124 (281)
370 cd04726 KGPDC_HPS 3-Keto-L-gul 78.4 34 0.00074 27.7 12.3 93 122-235 10-106 (202)
371 PLN03228 methylthioalkylmalate 78.1 32 0.0007 32.7 10.9 67 122-192 202-275 (503)
372 PRK13587 1-(5-phosphoribosyl)- 78.0 23 0.00051 29.8 9.3 74 122-201 148-221 (234)
373 cd03174 DRE_TIM_metallolyase D 78.0 17 0.00038 30.8 8.7 23 123-145 144-166 (265)
374 PRK05718 keto-hydroxyglutarate 77.9 13 0.00027 31.0 7.4 68 122-199 24-92 (212)
375 smart00642 Aamy Alpha-amylase 77.7 6.7 0.00015 31.2 5.6 28 216-243 67-94 (166)
376 PF06180 CbiK: Cobalt chelatas 77.6 11 0.00025 32.4 7.3 147 124-278 57-211 (262)
377 PRK08745 ribulose-phosphate 3- 77.5 41 0.0009 28.2 11.5 72 123-201 122-199 (223)
378 TIGR00737 nifR3_yhdG putative 77.5 21 0.00046 31.6 9.3 83 187-271 81-168 (319)
379 PRK09432 metF 5,10-methylenete 77.5 48 0.001 29.1 11.3 30 122-151 94-123 (296)
380 COG3623 SgaU Putative L-xylulo 77.4 19 0.00041 30.3 8.1 54 179-234 16-69 (287)
381 PRK08091 ribulose-phosphate 3- 77.4 25 0.00055 29.6 9.1 72 123-201 130-207 (228)
382 COG3473 Maleate cis-trans isom 77.2 26 0.00056 29.0 8.7 75 120-200 42-123 (238)
383 cd07940 DRE_TIM_IPMS 2-isoprop 77.1 8.7 0.00019 33.1 6.6 30 158-187 142-174 (268)
384 cd04740 DHOD_1B_like Dihydroor 77.1 20 0.00044 31.2 9.0 78 124-202 165-261 (296)
385 cd02911 arch_FMN Archeal FMN-b 77.0 20 0.00042 30.3 8.5 78 125-211 152-230 (233)
386 COG3142 CutC Uncharacterized p 77.0 43 0.00094 28.1 12.0 118 124-256 72-191 (241)
387 PRK06843 inosine 5-monophospha 77.0 47 0.001 30.6 11.4 119 126-255 153-276 (404)
388 PRK13398 3-deoxy-7-phosphohept 76.9 48 0.001 28.6 13.0 107 123-234 39-163 (266)
389 cd02801 DUS_like_FMN Dihydrour 76.9 18 0.00038 30.1 8.3 74 125-201 138-213 (231)
390 PLN02746 hydroxymethylglutaryl 76.9 34 0.00074 30.8 10.3 39 155-193 193-234 (347)
391 PF00977 His_biosynth: Histidi 76.7 32 0.00069 28.9 9.7 72 122-201 147-220 (229)
392 PRK07259 dihydroorotate dehydr 76.6 52 0.0011 28.8 11.7 78 123-200 102-188 (301)
393 cd07941 DRE_TIM_LeuA3 Desulfob 76.5 13 0.00028 32.2 7.5 31 158-188 150-183 (273)
394 PRK14040 oxaloacetate decarbox 76.4 72 0.0016 31.0 13.0 98 123-234 153-256 (593)
395 TIGR00126 deoC deoxyribose-pho 76.0 15 0.00033 30.5 7.4 75 122-200 129-203 (211)
396 cd04733 OYE_like_2_FMN Old yel 75.8 30 0.00064 31.0 9.8 79 123-201 234-322 (338)
397 cd04732 HisA HisA. Phosphorib 75.8 25 0.00054 29.3 8.9 70 128-201 149-219 (234)
398 PF03786 UxuA: D-mannonate deh 75.8 10 0.00022 34.1 6.6 85 138-243 25-110 (351)
399 TIGR00262 trpA tryptophan synt 75.7 51 0.0011 28.3 10.9 44 158-201 183-227 (256)
400 cd02072 Glm_B12_BD B12 binding 75.2 32 0.0007 26.1 8.4 82 168-261 23-108 (128)
401 PF00218 IGPS: Indole-3-glycer 75.2 48 0.001 28.4 10.4 115 128-271 71-186 (254)
402 PRK10415 tRNA-dihydrouridine s 75.2 21 0.00046 31.7 8.6 76 125-204 149-227 (321)
403 TIGR00695 uxuA mannonate dehyd 75.1 21 0.00045 32.7 8.5 87 131-243 16-108 (394)
404 PRK01033 imidazole glycerol ph 75.1 30 0.00066 29.6 9.3 69 128-201 155-226 (258)
405 TIGR00973 leuA_bact 2-isopropy 75.1 37 0.00079 32.2 10.6 23 123-145 144-166 (494)
406 TIGR02660 nifV_homocitr homoci 75.1 59 0.0013 29.4 11.6 78 122-205 139-221 (365)
407 cd04723 HisA_HisF Phosphoribos 74.6 31 0.00066 29.1 9.1 74 122-202 146-219 (233)
408 PRK07259 dihydroorotate dehydr 74.6 22 0.00047 31.2 8.5 79 123-202 167-264 (301)
409 PRK00115 hemE uroporphyrinogen 74.5 64 0.0014 28.9 15.5 70 131-202 192-268 (346)
410 cd03465 URO-D_like The URO-D _ 74.4 61 0.0013 28.6 15.3 74 128-202 171-251 (330)
411 TIGR01768 GGGP-family geranylg 74.4 44 0.00095 28.1 9.7 77 122-202 132-209 (223)
412 PF03932 CutC: CutC family; I 74.3 31 0.00068 28.4 8.7 115 123-256 70-190 (201)
413 cd02812 PcrB_like PcrB_like pr 74.2 40 0.00086 28.2 9.4 73 121-202 131-205 (219)
414 cd07948 DRE_TIM_HCS Saccharomy 73.9 27 0.00058 30.1 8.6 35 158-192 140-177 (262)
415 PRK14024 phosphoribosyl isomer 73.8 29 0.00063 29.3 8.8 72 126-202 147-223 (241)
416 PF01207 Dus: Dihydrouridine s 73.8 11 0.00025 33.2 6.5 84 123-210 136-224 (309)
417 cd03308 CmuA_CmuC_like CmuA_Cm 73.7 71 0.0015 29.1 15.3 98 159-258 255-377 (378)
418 PRK07428 nicotinate-nucleotide 73.5 29 0.00062 30.4 8.8 59 134-202 212-272 (288)
419 PF01261 AP_endonuc_2: Xylose 73.2 14 0.00031 29.7 6.7 76 187-271 1-92 (213)
420 cd07945 DRE_TIM_CMS Leptospira 73.1 30 0.00065 30.1 8.9 77 123-205 145-227 (280)
421 TIGR00737 nifR3_yhdG putative 73.1 30 0.00066 30.6 9.1 76 126-204 148-225 (319)
422 cd04734 OYE_like_3_FMN Old yel 73.0 33 0.00072 30.8 9.4 81 123-203 226-317 (343)
423 PRK08005 epimerase; Validated 72.9 37 0.00081 28.2 9.0 72 123-201 118-191 (210)
424 TIGR02668 moaA_archaeal probab 72.9 64 0.0014 28.1 13.1 44 186-237 139-182 (302)
425 PRK08385 nicotinate-nucleotide 72.9 28 0.0006 30.3 8.5 43 159-202 214-260 (278)
426 PRK10415 tRNA-dihydrouridine s 72.8 32 0.00069 30.6 9.2 83 187-271 83-170 (321)
427 COG0042 tRNA-dihydrouridine sy 72.7 70 0.0015 28.5 12.5 126 122-257 76-220 (323)
428 PRK07329 hypothetical protein; 72.7 37 0.00081 28.8 9.3 69 159-235 165-242 (246)
429 COG1816 Add Adenosine deaminas 72.5 38 0.00082 30.5 9.4 84 120-205 148-233 (345)
430 PRK08673 3-deoxy-7-phosphohept 72.5 68 0.0015 28.7 11.0 107 123-234 105-229 (335)
431 PRK11815 tRNA-dihydrouridine s 72.5 34 0.00073 30.6 9.3 83 186-270 82-171 (333)
432 COG0148 Eno Enolase [Carbohydr 72.5 60 0.0013 29.6 10.5 118 121-260 259-381 (423)
433 PRK06106 nicotinate-nucleotide 72.4 30 0.00065 30.1 8.6 42 159-202 226-267 (281)
434 COG0106 HisA Phosphoribosylfor 72.4 36 0.00078 28.9 8.7 73 126-202 148-222 (241)
435 PRK02261 methylaspartate mutas 72.4 41 0.0009 25.7 9.3 70 122-200 41-118 (137)
436 COG0134 TrpC Indole-3-glycerol 72.3 44 0.00096 28.6 9.3 93 122-235 66-159 (254)
437 COG1692 Calcineurin-like phosp 72.2 27 0.00059 29.7 7.8 62 152-214 10-81 (266)
438 TIGR01334 modD putative molybd 72.1 29 0.00064 30.1 8.5 60 133-202 203-264 (277)
439 KOG2599 Pyridoxal/pyridoxine/p 72.1 65 0.0014 27.9 11.5 111 118-234 58-182 (308)
440 PRK00748 1-(5-phosphoribosyl)- 72.1 37 0.00081 28.3 9.1 67 129-201 150-220 (233)
441 cd00950 DHDPS Dihydrodipicolin 71.9 29 0.00062 30.1 8.6 95 155-260 17-124 (284)
442 PRK09016 quinolinate phosphori 71.6 32 0.0007 30.2 8.6 42 159-202 240-281 (296)
443 cd02933 OYE_like_FMN Old yello 71.1 26 0.00056 31.4 8.2 86 123-213 239-328 (338)
444 PRK07107 inosine 5-monophospha 71.1 26 0.00057 33.2 8.6 76 123-205 239-316 (502)
445 TIGR01501 MthylAspMutase methy 71.1 42 0.0009 25.7 8.2 81 168-260 25-109 (134)
446 PRK11449 putative deoxyribonuc 70.9 4.3 9.4E-05 34.8 3.1 48 19-69 207-255 (258)
447 cd02931 ER_like_FMN Enoate red 70.8 39 0.00084 30.8 9.4 95 122-216 249-352 (382)
448 PLN02321 2-isopropylmalate syn 70.8 45 0.00098 32.6 10.2 64 122-189 203-273 (632)
449 PRK08883 ribulose-phosphate 3- 70.7 62 0.0013 27.0 11.4 72 123-201 118-195 (220)
450 PRK06978 nicotinate-nucleotide 70.5 38 0.00082 29.7 8.8 61 133-204 220-280 (294)
451 PRK12595 bifunctional 3-deoxy- 70.3 85 0.0018 28.5 16.7 106 123-233 130-253 (360)
452 cd04724 Tryptophan_synthase_al 70.2 61 0.0013 27.5 10.0 42 159-201 173-215 (242)
453 PRK15447 putative protease; Pr 70.2 11 0.00024 33.2 5.5 50 184-239 18-68 (301)
454 PLN02361 alpha-amylase 70.1 13 0.00029 34.1 6.2 86 140-243 11-100 (401)
455 TIGR01464 hemE uroporphyrinoge 70.1 80 0.0017 28.1 15.8 69 132-202 187-262 (338)
456 PRK03620 5-dehydro-4-deoxygluc 70.1 60 0.0013 28.5 10.2 75 122-200 25-107 (303)
457 PRK03906 mannonate dehydratase 70.1 11 0.00024 34.4 5.7 59 182-243 40-108 (385)
458 cd01572 QPRTase Quinolinate ph 70.1 28 0.00061 30.1 8.0 59 133-202 197-255 (268)
459 PRK08508 biotin synthase; Prov 70.0 41 0.00089 29.1 9.1 100 131-231 105-216 (279)
460 PF01026 TatD_DNase: TatD rela 69.9 3.3 7.1E-05 35.4 2.2 46 19-67 205-251 (255)
461 TIGR01235 pyruv_carbox pyruvat 69.5 80 0.0017 33.4 12.2 78 122-205 686-768 (1143)
462 PLN02334 ribulose-phosphate 3- 69.4 66 0.0014 26.9 12.0 79 123-203 18-97 (229)
463 KOG1643 Triosephosphate isomer 69.2 64 0.0014 26.6 9.2 64 178-250 69-133 (247)
464 PRK15452 putative protease; Pr 69.2 44 0.00095 31.2 9.5 74 124-210 75-151 (443)
465 PF00113 Enolase_C: Enolase, C 69.2 55 0.0012 28.7 9.6 116 120-257 131-251 (295)
466 TIGR00742 yjbN tRNA dihydrouri 69.1 37 0.0008 30.2 8.6 84 187-272 73-163 (318)
467 PRK06559 nicotinate-nucleotide 69.0 44 0.00095 29.3 8.8 61 133-204 212-272 (290)
468 PRK12999 pyruvate carboxylase; 69.0 97 0.0021 32.8 12.8 78 122-205 688-770 (1146)
469 PLN00196 alpha-amylase; Provis 68.9 12 0.00026 34.7 5.7 28 216-243 89-116 (428)
470 KOG2544 Dihydropteroate syntha 68.8 87 0.0019 29.4 10.9 79 121-199 452-536 (711)
471 PRK09722 allulose-6-phosphate 68.8 53 0.0011 27.7 9.1 72 123-201 120-197 (229)
472 PF00290 Trp_syntA: Tryptophan 68.6 59 0.0013 28.0 9.5 45 157-202 182-227 (259)
473 COG1809 (2R)-phospho-3-sulfola 68.6 67 0.0015 26.9 9.2 106 119-234 54-168 (258)
474 TIGR00078 nadC nicotinate-nucl 68.5 36 0.00078 29.4 8.3 59 133-202 193-251 (265)
475 PRK05567 inosine 5'-monophosph 68.5 63 0.0014 30.6 10.6 115 128-255 230-351 (486)
476 PLN02334 ribulose-phosphate 3- 68.5 69 0.0015 26.7 11.2 61 139-201 140-202 (229)
477 TIGR01235 pyruv_carbox pyruvat 68.4 1.6E+02 0.0035 31.2 14.2 119 118-243 618-768 (1143)
478 PRK07896 nicotinate-nucleotide 68.4 47 0.001 29.1 8.9 45 158-203 230-276 (289)
479 cd07938 DRE_TIM_HMGL 3-hydroxy 68.1 43 0.00092 29.0 8.7 77 123-205 147-229 (274)
480 PF00128 Alpha-amylase: Alpha 68.1 6.1 0.00013 34.1 3.6 69 185-253 8-87 (316)
481 PRK13209 L-xylulose 5-phosphat 68.1 78 0.0017 27.2 11.0 128 122-257 21-177 (283)
482 TIGR00970 leuA_yeast 2-isoprop 68.0 1.2E+02 0.0026 29.3 16.2 138 120-261 43-197 (564)
483 TIGR00289 conserved hypothetic 68.0 72 0.0016 26.7 10.2 71 125-204 72-143 (222)
484 PRK05742 nicotinate-nucleotide 68.0 39 0.00085 29.4 8.4 62 132-204 203-264 (277)
485 PRK14057 epimerase; Provisiona 67.7 79 0.0017 27.1 11.7 91 123-228 144-240 (254)
486 PF13714 PEP_mutase: Phosphoen 67.6 29 0.00063 29.4 7.4 68 122-193 117-189 (238)
487 PF04131 NanE: Putative N-acet 67.6 46 0.00099 27.1 8.0 68 133-202 107-174 (192)
488 cd00740 MeTr MeTr subgroup of 67.5 79 0.0017 27.0 12.5 135 122-261 23-189 (252)
489 PF07745 Glyco_hydro_53: Glyco 67.3 15 0.00032 32.9 5.8 95 171-270 15-132 (332)
490 cd02809 alpha_hydroxyacid_oxid 67.0 59 0.0013 28.5 9.5 71 131-202 186-257 (299)
491 PRK07028 bifunctional hexulose 67.0 1.1E+02 0.0023 28.4 13.8 93 122-235 13-110 (430)
492 cd01573 modD_like ModD; Quinol 67.0 49 0.0011 28.7 8.8 58 135-202 200-259 (272)
493 CHL00200 trpA tryptophan synth 66.6 85 0.0018 27.1 14.3 136 123-260 27-200 (263)
494 COG1312 UxuA D-mannonate dehyd 66.5 49 0.0011 29.5 8.5 33 217-249 81-114 (362)
495 PRK06256 biotin synthase; Vali 66.4 38 0.00083 30.1 8.4 98 133-230 157-266 (336)
496 cd00331 IGPS Indole-3-glycerol 66.4 62 0.0013 26.7 9.2 65 132-202 135-202 (217)
497 cd01321 ADGF Adenosine deamina 66.4 38 0.00082 30.5 8.3 53 158-211 178-241 (345)
498 TIGR02090 LEU1_arch isopropylm 66.3 39 0.00084 30.6 8.4 78 122-205 138-220 (363)
499 TIGR02403 trehalose_treC alpha 66.1 22 0.00048 34.1 7.1 33 216-248 72-105 (543)
500 COG0407 HemE Uroporphyrinogen- 65.7 1E+02 0.0023 27.8 15.2 131 128-260 192-348 (352)
No 1
>KOG2900 consensus Biotin synthase [Coenzyme transport and metabolism]
Probab=100.00 E-value=4.2e-49 Score=319.33 Aligned_cols=278 Identities=63% Similarity=1.034 Sum_probs=257.6
Q ss_pred CccchhhhhccccceeecCCccccccccccccccchHHHHHHHHHhcCCCCCCCHHHHHHhhCCChHHHHHHHHHHHHhh
Q 022946 1 MMSFRSLLRSQRSLSLRPSKKFLALHSSCSCYSASAAAIEAERTIREGPRHDWSKDDIKSIYDSPVLDLLFHGAQVHRHA 80 (289)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~ee~~~l~~~~~~~l~~~a~~~~r~~ 80 (289)
||+-|+..|.+ ++|+.+ .+.-+.....+.|-+..+..++...++.++|+++|+..+|+.|+++|.+.++.++|+.
T Consensus 1 mM~tr~t~R~q----lr~~~t-~~~~S~t~~ssls~~~a~~~~~~~~~prn~Wtr~eik~iYdtPLldL~f~aa~~HRk~ 75 (380)
T KOG2900|consen 1 MMSTRYTARPQ----LRKYAT-AAVKSTTASSSLSTLGALQYALSLDEPRNSWTRSEIKEIYDTPLLDLTFAAALQHRKW 75 (380)
T ss_pred CcchHHhhHHH----hhhhhh-hhhccchhhhhhhhhhhhHHHhhccCCcccccHHHHHHHhcchHHHHHHHHHHHHhhh
Confidence 78888765443 223222 2234555666777788899999999999999999999999999999999999999999
Q ss_pred hCCCeeEEeEeeccccCCCCcCCCCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHHcCCcEEEEecccCCCCCCchhHHH
Q 022946 81 HNFREVQQCTLLSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQ 160 (289)
Q Consensus 81 ~~g~~~~~~~~i~~~t~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~~g~~~i~i~~~~~~~~ge~~~~~~ 160 (289)
|++.+|+.+++++|+|.||..+|.||+++..++++.+..+.|..|+|+++++.+++.|.++||++.+|++..|....+.+
T Consensus 76 Hdp~kVQqCTLlsIKtGGCsEDCkYCaQSSRy~TGvKA~klmk~DeVi~~Ak~AK~~GSTRFCmGaAWRD~~GRk~~fk~ 155 (380)
T KOG2900|consen 76 HDPTKVQQCTLLSIKTGGCSEDCKYCAQSSRYDTGVKAEKLMKVDEVIKEAKEAKRNGSTRFCMGAAWRDMKGRKSAFKR 155 (380)
T ss_pred CCccceeeeEEEEeecCCcccccchhhhhcccccchhHHHHhhHHHHHHHHHHHHhcCCceeecchhhhhhccchhHHHH
Confidence 99999999999999999999999999999999999888888999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHcCCCeEecCCCchHHHHhccCCCCCHHHHHHHHHHHHHcCCceeecEE
Q 022946 161 ILEYVKDIRDMGMEVCCTLGMLEKHQAIELKKAGLTAYNHNLDTSREFYSKIITTRSYDERLETLKHVREAGINVCSGGI 240 (289)
Q Consensus 161 l~e~i~~ik~~~~~i~~~~g~l~~e~l~~L~~aG~~~v~i~let~~~~~~~i~~~~~~~~~~~~i~~~~~~Gi~v~~~~i 240 (289)
++|+|+.++.+|++++++.|.++.+++.+||++|++.+++++|+..|.|.++....+|++++++|+.++++||+++++.|
T Consensus 156 IlE~ikevr~MgmEvCvTLGMv~~qQAkeLKdAGLTAYNHNlDTSREyYskvItTRtYDdRL~Ti~nvr~aGikvCsGGI 235 (380)
T KOG2900|consen 156 ILEMIKEVRDMGMEVCVTLGMVDQQQAKELKDAGLTAYNHNLDTSREYYSKVITTRTYDDRLQTIKNVREAGIKVCSGGI 235 (380)
T ss_pred HHHHHHHHHcCCceeeeeeccccHHHHHHHHhccceecccCccchhhhhcccceecchHHHHHHHHHHHHhcceeccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eecCCCHHHHHHHHHHHhcCCCCCCeeeeccceecCCCCCCCC
Q 022946 241 IGLGEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQ 283 (289)
Q Consensus 241 ~Glget~ed~~~~l~~l~~l~~~~~~v~i~~~~p~pgTpl~~~ 283 (289)
+|+||.++|.+.++..|..++.+|++|+|+.++|++|||+++.
T Consensus 236 lGLGE~e~DriGlihtLatmp~HPESvPiN~LvaikGTP~~d~ 278 (380)
T KOG2900|consen 236 LGLGESEDDRIGLIHTLATMPPHPESVPINRLVAIKGTPMADE 278 (380)
T ss_pred ccccccccceeeeeeeeccCCCCCcccccceEEecCCcccchh
Confidence 9999999999999999999988999999999999999999984
No 2
>COG0502 BioB Biotin synthase and related enzymes [Coenzyme metabolism]
Probab=100.00 E-value=2.1e-45 Score=316.67 Aligned_cols=234 Identities=55% Similarity=0.918 Sum_probs=219.5
Q ss_pred CCCCCHHHHHHhhCCChHH-HHHHHHHHHHhhhCCCeeEEeEeeccccCCCCcCCCCCCCCCCCCCCCCCcCCCCHHHHH
Q 022946 50 RHDWSKDDIKSIYDSPVLD-LLFHGAQVHRHAHNFREVQQCTLLSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVM 128 (289)
Q Consensus 50 ~~~ls~ee~~~l~~~~~~~-l~~~a~~~~r~~~~g~~~~~~~~i~~~t~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~ 128 (289)
+..||.+|+..+++.|..+ +++.++..+|++|+|+.|.++++|+++|.+|+.+|.||+++.++..+...+..+++|+|+
T Consensus 11 ~~~~~~~e~~~l~~~~~~~~~L~~aA~~~R~~~~g~~V~l~~ii~iktg~c~edC~yC~qS~~~~~~~~~~~l~~~eeIl 90 (335)
T COG0502 11 GERWTLDEALALLDLPDEDELLFEAAQKHRLHFDGNEVQLSTLISIKTGCCPEDCAYCSQSARYKTGVKARKLMEVEEIL 90 (335)
T ss_pred cCCcCHHHHHHHHcCCcchHHHHHHHHHHHHhcCCCeEEEEEEEEeecCCCCCCCCCccccccCcCCCchhhcCCHHHHH
Confidence 5799999999999988777 889999999999999999999999997778899999999998887777788889999999
Q ss_pred HHHHHHHHcCCcEEEEecccCCCCCCchhHHHHHHHHHHHH-hcCceEEEeCCCCCHHHHHHHHHcCCCeEecCCCchHH
Q 022946 129 QAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIR-DMGMEVCCTLGMLEKHQAIELKKAGLTAYNHNLDTSRE 207 (289)
Q Consensus 129 ~~~~~~~~~g~~~i~i~~~~~~~~ge~~~~~~l~e~i~~ik-~~~~~i~~~~g~l~~e~l~~L~~aG~~~v~i~let~~~ 207 (289)
+.++.+++.|+.+++++.+|.+ .+ ...+++.++++.++ ..+++++.+.|.++.+++++|+++|++++++++||.++
T Consensus 91 e~Ak~ak~~Ga~r~c~~aagr~-~~--~~~~~i~~~v~~Vk~~~~le~c~slG~l~~eq~~~L~~aGvd~ynhNLeTs~~ 167 (335)
T COG0502 91 EAAKKAKAAGATRFCMGAAGRG-PG--RDMEEVVEAIKAVKEELGLEVCASLGMLTEEQAEKLADAGVDRYNHNLETSPE 167 (335)
T ss_pred HHHHHHHHcCCceEEEEEeccC-CC--ccHHHHHHHHHHHHHhcCcHHhhccCCCCHHHHHHHHHcChhheecccccCHH
Confidence 9999999999999999988875 33 58899999999999 78999999999999999999999999999999999999
Q ss_pred HHhccCCCCCHHHHHHHHHHHHHcCCceeecEEeecCCCHHHHHHHHHHHhcCCCCCCeeeeccceecCCCCCCCCCCCC
Q 022946 208 FYSKIITTRSYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQKLKY 287 (289)
Q Consensus 208 ~~~~i~~~~~~~~~~~~i~~~~~~Gi~v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~i~~~~p~pgTpl~~~~~~~ 287 (289)
.|++++++++|++++++++.++++|++++++.|+|+|||.+|+++++..|+++.. |++|+|+.|+|+|||||++.++++
T Consensus 168 ~y~~I~tt~t~edR~~tl~~vk~~Gi~vcsGgI~GlGEs~eDri~~l~~L~~l~~-pdsVPIn~l~P~~GTPle~~~~~~ 246 (335)
T COG0502 168 FYENIITTRTYEDRLNTLENVREAGIEVCSGGIVGLGETVEDRAELLLELANLPT-PDSVPINFLNPIPGTPLENAKPLD 246 (335)
T ss_pred HHcccCCCCCHHHHHHHHHHHHHcCCccccceEecCCCCHHHHHHHHHHHHhCCC-CCeeeeeeecCCCCCccccCCCCC
Confidence 9999999999999999999999999999999999999999999999999999953 999999999999999999987765
No 3
>PLN02389 biotin synthase
Probab=100.00 E-value=3.3e-42 Score=307.60 Aligned_cols=239 Identities=85% Similarity=1.346 Sum_probs=217.6
Q ss_pred CCCCCCHHHHHHhhCCChHHHHHHHHHHHHhhhCCCeeEEeEeeccccCCCCcCCCCCCCCCCCCCCCCCcCCCCHHHHH
Q 022946 49 PRHDWSKDDIKSIYDSPVLDLLFHGAQVHRHAHNFREVQQCTLLSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVM 128 (289)
Q Consensus 49 ~~~~ls~ee~~~l~~~~~~~l~~~a~~~~r~~~~g~~~~~~~~i~~~t~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~ 128 (289)
..+.||.+|++.|++.++.+++..|+.++++++.++.|+++.+++++|++|+.+|.||+++..++.+...++.+++|+|+
T Consensus 43 ~~~~lt~~e~l~L~~~~l~~l~~~A~~vr~~~~~~~~v~~~~i~n~~T~~C~~~C~fCaqs~~~~~~~~~~~~Ls~EeIl 122 (379)
T PLN02389 43 PRNDWTRDEIKEVYDSPLLDLLFHGAQVHRHAHDPREVQQCTLLSIKTGGCSEDCSYCPQSSRYDTGVKAQKLMSKDDVL 122 (379)
T ss_pred ccCCCCHHHHHHHHcCcHHHHHHHHHHHHHHhcCCCEEEEEEEEEeccCCcCcCCCCCCCcccCCCCCcccccCCHHHHH
Confidence 47789999999999878899999999998888778899999999999999999999999986555555556679999999
Q ss_pred HHHHHHHHcCCcEEEEecccCCCCCCchhHHHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHcCCCeEecCCCchHHH
Q 022946 129 QAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMGMEVCCTLGMLEKHQAIELKKAGLTAYNHNLDTSREF 208 (289)
Q Consensus 129 ~~~~~~~~~g~~~i~i~~~~~~~~ge~~~~~~l~e~i~~ik~~~~~i~~~~g~l~~e~l~~L~~aG~~~v~i~let~~~~ 208 (289)
+.++.+.+.|+++|+++.++....+++..+++++++++.+|+.+++++.++|.++.+.+++|+++|++++.+++||.++.
T Consensus 123 ~~a~~~~~~G~~~~~ivts~rg~~~e~~~~e~i~eiir~ik~~~l~i~~s~G~l~~E~l~~LkeAGld~~~~~LeTs~~~ 202 (379)
T PLN02389 123 EAAKRAKEAGSTRFCMGAAWRDTVGRKTNFNQILEYVKEIRGMGMEVCCTLGMLEKEQAAQLKEAGLTAYNHNLDTSREY 202 (379)
T ss_pred HHHHHHHHcCCCEEEEEecccCCCCChhHHHHHHHHHHHHhcCCcEEEECCCCCCHHHHHHHHHcCCCEEEeeecCChHH
Confidence 99999999999999998666555676778999999999999888999999999999999999999999999999999889
Q ss_pred HhccCCCCCHHHHHHHHHHHHHcCCceeecEEeecCCCHHHHHHHHHHHhcCCCCCCeeeeccceecCCCCCCCCCCCC
Q 022946 209 YSKIITTRSYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQKLKY 287 (289)
Q Consensus 209 ~~~i~~~~~~~~~~~~i~~~~~~Gi~v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~i~~~~p~pgTpl~~~~~~~ 287 (289)
|+++++++++++++++++.+++.|+++++++|+|+|||.+|+.+++.++++++.+++.++++.|+|+|||||++.++++
T Consensus 203 y~~i~~~~s~e~rl~ti~~a~~~Gi~v~sg~IiGlgEt~edrv~~l~~Lr~L~~~~~~v~l~~l~P~~GTpL~~~~~~s 281 (379)
T PLN02389 203 YPNVITTRSYDDRLETLEAVREAGISVCSGGIIGLGEAEEDRVGLLHTLATLPEHPESVPINALVAVKGTPLEDQKPVE 281 (379)
T ss_pred hCCcCCCCCHHHHHHHHHHHHHcCCeEeEEEEECCCCCHHHHHHHHHHHHhcccCCcEEecccceecCCCcCCCCCCCC
Confidence 9999999999999999999999999999999999999999999999999999645899999999999999999987665
No 4
>PRK15108 biotin synthase; Provisional
Probab=100.00 E-value=3.4e-40 Score=292.89 Aligned_cols=237 Identities=56% Similarity=0.962 Sum_probs=210.6
Q ss_pred CCCCCCHHHHHHhhCCChHHHHHHHHHHHHhhhCCCeeEEeEeeccccCCCCcCCCCCCCCCCCCCCCCCcCCCCHHHHH
Q 022946 49 PRHDWSKDDIKSIYDSPVLDLLFHGAQVHRHAHNFREVQQCTLLSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVM 128 (289)
Q Consensus 49 ~~~~ls~ee~~~l~~~~~~~l~~~a~~~~r~~~~g~~~~~~~~i~~~t~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~ 128 (289)
..++||.+|++.|++.++.+++..|..++++++.++.++++.++++.|++|+.+|.||+++..+..+...++.+++|||+
T Consensus 3 ~~~~l~~~e~~~l~~~~l~~l~~~A~~ir~~~fg~~~v~l~~i~~~~Tn~C~~~C~yC~~~~~~~~~~~~~~~ls~eEI~ 82 (345)
T PRK15108 3 HRPRWTLSQVTELFEKPLLELLFEAQQVHRQHFDPRQVQVSTLLSIKTGACPEDCKYCPQSSRYKTGLEAERLMEVEQVL 82 (345)
T ss_pred ccCCCCHHHHHHHHcccHHHHHHHHHHHHHHhcCCCEEEEEEeEEEECCCcCCCCcCCCCcccCCCCCCcccCCCHHHHH
Confidence 36799999999999888899999887777777655789999999888999999999999986444444456679999999
Q ss_pred HHHHHHHHcCCcEEEEecccCCCCCCchhHHHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHcCCCeEecCCCchHHH
Q 022946 129 QAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMGMEVCCTLGMLEKHQAIELKKAGLTAYNHNLDTSREF 208 (289)
Q Consensus 129 ~~~~~~~~~g~~~i~i~~~~~~~~ge~~~~~~l~e~i~~ik~~~~~i~~~~g~l~~e~l~~L~~aG~~~v~i~let~~~~ 208 (289)
+.++.+.+.|+++|++++++.++. ...++++.++++.+|+.++.++.++|.++.+.+++|+++|+|++++++||.++.
T Consensus 83 ~~a~~~~~~G~~~i~i~~~g~~p~--~~~~e~i~~~i~~ik~~~i~v~~s~G~ls~e~l~~LkeAGld~~n~~leT~p~~ 160 (345)
T PRK15108 83 ESARKAKAAGSTRFCMGAAWKNPH--ERDMPYLEQMVQGVKAMGLETCMTLGTLSESQAQRLANAGLDYYNHNLDTSPEF 160 (345)
T ss_pred HHHHHHHHcCCCEEEEEecCCCCC--cchHHHHHHHHHHHHhCCCEEEEeCCcCCHHHHHHHHHcCCCEEeeccccChHh
Confidence 999999999999999977653321 246799999999999888888889999999999999999999999999999999
Q ss_pred HhccCCCCCHHHHHHHHHHHHHcCCceeecEEeecCCCHHHHHHHHHHHhcCCCCCCeeeeccceecCCCCCCCCCCCC
Q 022946 209 YSKIITTRSYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQKLKY 287 (289)
Q Consensus 209 ~~~i~~~~~~~~~~~~i~~~~~~Gi~v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~i~~~~p~pgTpl~~~~~~~ 287 (289)
|.++++++++++++++++.++++|+.+++++|+|+|||.+|+.+++..++++++.++.|+++.|+|.|||||++.++++
T Consensus 161 f~~I~~~~~~~~rl~~i~~a~~~G~~v~sg~i~GlgEt~ed~v~~~~~l~~l~~~~~~ip~~~~~P~~gTpl~~~~~~~ 239 (345)
T PRK15108 161 YGNIITTRTYQERLDTLEKVRDAGIKVCSGGIVGLGETVKDRAGLLLQLANLPTPPESVPINMLVKVKGTPLADNDDVD 239 (345)
T ss_pred cCCCCCCCCHHHHHHHHHHHHHcCCceeeEEEEeCCCCHHHHHHHHHHHHhccCCCCEEEeCCccCCCCCCCCCCCCCC
Confidence 9999999999999999999999999999999999999999999999999999755779999999999999999887654
No 5
>PRK06256 biotin synthase; Validated
Probab=100.00 E-value=5.8e-38 Score=279.79 Aligned_cols=244 Identities=36% Similarity=0.612 Sum_probs=208.7
Q ss_pred HHHHHHHHHhcCCCCCCCHHHHHHhhCCC--hHHHHHHHHHHHHhhhCCCeeEEeEeeccccCCCCcCCCCCCCCCCCCC
Q 022946 37 AAIEAERTIREGPRHDWSKDDIKSIYDSP--VLDLLFHGAQVHRHAHNFREVQQCTLLSIKTGGCSEDCSYCPQSSRYDT 114 (289)
Q Consensus 37 ~~~~~~~~~~~~~~~~ls~ee~~~l~~~~--~~~l~~~a~~~~r~~~~g~~~~~~~~i~~~t~~C~~~C~fC~~~~~~~~ 114 (289)
+..+.+++.. ++.+|.+|+..|++.+ ..+.+..++...|++++|+.+.++.++++.|++|+.+|.||+++..++.
T Consensus 7 ~~~~~~~~~~---g~~~~~~e~~~ll~~~~~~~~~L~~~A~~~r~~~~g~~v~~~~i~~~~s~~C~~~C~fC~~~~~~~~ 83 (336)
T PRK06256 7 ILKLARKLLE---GEGLTKEEALALLEIPDDDLLELLAAAYEVRKHFCGKKVKLNTIINAKSGLCPEDCGYCSQSAGSSA 83 (336)
T ss_pred HHHHHHHHHc---CCCCCHHHHHHHHcCChHHHHHHHHHHHHHHHHhCCCeEEEEEeeeccCCCCCCCCccCCCcCCCCC
Confidence 4667778777 9999999999999743 3444555555557777899999998888889999999999999865443
Q ss_pred CCCCcCCCCHHHHHHHHHHHHHcCCcEEEEecccCCCCCCchhHHHHHHHHHHHHh-cCceEEEeCCCCCHHHHHHHHHc
Q 022946 115 GVKGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRD-MGMEVCCTLGMLEKHQAIELKKA 193 (289)
Q Consensus 115 ~~~~~~~~~~eei~~~~~~~~~~g~~~i~i~~~~~~~~ge~~~~~~l~e~i~~ik~-~~~~i~~~~g~l~~e~l~~L~~a 193 (289)
...+++.+++|+|+++++.+.+.|+.++++++++..+.. ..++++.++++.+++ .++.++++.|.++++.++.|+++
T Consensus 84 ~~~~~~~~s~eeI~~~~~~~~~~g~~~~~l~~~g~~p~~--~~~~~~~e~i~~i~~~~~i~~~~~~g~l~~e~l~~Lkea 161 (336)
T PRK06256 84 PVYRYAWLDIEELIEAAKEAIEEGAGTFCIVASGRGPSG--KEVDQVVEAVKAIKEETDLEICACLGLLTEEQAERLKEA 161 (336)
T ss_pred CCceecCCCHHHHHHHHHHHHHCCCCEEEEEecCCCCCc--hHHHHHHHHHHHHHhcCCCcEEecCCcCCHHHHHHHHHh
Confidence 333456689999999999999999999988765543322 245789999999884 56778888999999999999999
Q ss_pred CCCeEecCCCchHHHHhccCCCCCHHHHHHHHHHHHHcCCceeecEEeecCCCHHHHHHHHHHHhcCCCCCCeeeeccce
Q 022946 194 GLTAYNHNLDTSREFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALL 273 (289)
Q Consensus 194 G~~~v~i~let~~~~~~~i~~~~~~~~~~~~i~~~~~~Gi~v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~i~~~~ 273 (289)
|++++.+++||.+++++++++++++++++++++.++++|+.+++++|+|+|||.+|+.+++.+++++ +++.++++.|+
T Consensus 162 G~~~v~~~lEts~~~~~~i~~~~t~~~~i~~i~~a~~~Gi~v~~~~I~GlgEt~ed~~~~~~~l~~l--~~~~v~i~~l~ 239 (336)
T PRK06256 162 GVDRYNHNLETSRSYFPNVVTTHTYEDRIDTCEMVKAAGIEPCSGGIIGMGESLEDRVEHAFFLKEL--DADSIPINFLN 239 (336)
T ss_pred CCCEEecCCccCHHHHhhcCCCCCHHHHHHHHHHHHHcCCeeccCeEEeCCCCHHHHHHHHHHHHhC--CCCEEeecccc
Confidence 9999999999988999999999999999999999999999999999999999999999999999999 68999999999
Q ss_pred ecCCCCCCCCCCCC
Q 022946 274 AVKGTPLQDQKLKY 287 (289)
Q Consensus 274 p~pgTpl~~~~~~~ 287 (289)
|.|||||++.++++
T Consensus 240 P~pGT~l~~~~~~~ 253 (336)
T PRK06256 240 PIPGTPLENHPELT 253 (336)
T ss_pred cCCCCCCCCCCCCC
Confidence 99999999987654
No 6
>PRK08444 hypothetical protein; Provisional
Probab=100.00 E-value=4.6e-37 Score=272.36 Aligned_cols=236 Identities=16% Similarity=0.223 Sum_probs=202.2
Q ss_pred HHHHHHhcCCCCCCCHHHHHHhhCCChHHHHHHHHHHHHhhhCCCeeEEe--EeeccccCCCCcCCCCCCCCCCCCCCCC
Q 022946 40 EAERTIREGPRHDWSKDDIKSIYDSPVLDLLFHGAQVHRHAHNFREVQQC--TLLSIKTGGCSEDCSYCPQSSRYDTGVK 117 (289)
Q Consensus 40 ~~~~~~~~~~~~~ls~ee~~~l~~~~~~~l~~~a~~~~r~~~~g~~~~~~--~~i~~~t~~C~~~C~fC~~~~~~~~~~~ 117 (289)
+.+++.. +.++|.+|+..|++.++.+|+..|..+ |++++|+.++++ .+|++ ||.|..+|.||+|+...+.. .
T Consensus 3 i~~kv~~---g~~ls~eeal~Ll~~dl~~L~~~A~~v-R~~~~G~~Vt~~~n~~In~-TN~C~~~C~FCaf~~~~~~~-~ 76 (353)
T PRK08444 3 LIEKLEN---NERLNQEEAVKLYDLDLFTLGKYADKK-RTKLHGKKVYFNVNRHINP-TNICADVCKFCAFSAHRKNP-N 76 (353)
T ss_pred HHHHHhc---CCCCCHHHHHHHhhcCHHHHHHHHHHH-HHHhcCCEEEEEecCCccc-ccccccCCccCCCccCCCCC-c
Confidence 5777777 899999999999977666666666666 455569999877 78999 99999999999998654432 3
Q ss_pred CcCCCCHHHHHHHHHHHHHcCCcEEEEecccCCCCCCchhHHHHHHHHHHHHhc--CceEEE-----------eCCCCCH
Q 022946 118 GQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDM--GMEVCC-----------TLGMLEK 184 (289)
Q Consensus 118 ~~~~~~~eei~~~~~~~~~~g~~~i~i~~~~~~~~ge~~~~~~l~e~i~~ik~~--~~~i~~-----------~~g~l~~ 184 (289)
.| .+++|+|++.++.+.+.|+++|+|+||.... ..++++.++++.+|+. ++.++. +.|...+
T Consensus 77 ~y-~ls~eeI~~~a~~a~~~G~~ei~iv~G~~p~----~~~e~y~e~ir~Ik~~~p~i~i~a~s~~Ei~~~a~~~g~~~~ 151 (353)
T PRK08444 77 PY-TMSHEEILEIVKNSVKRGIKEVHIVSAHNPN----YGYEWYLEIFKKIKEAYPNLHVKAMTAAEVDFLSRKFGKSYE 151 (353)
T ss_pred cc-cCCHHHHHHHHHHHHHCCCCEEEEeccCCCC----CCHHHHHHHHHHHHHHCCCceEeeCCHHHHHHHHHHcCCCHH
Confidence 45 4899999999999999999999999865422 3678899999999953 567765 6788889
Q ss_pred HHHHHHHHcCCCeEec-CCCch-HHHHhccCCCCC-HHHHHHHHHHHHHcCCceeecEEeecCCCHHHHHHHHHHHhcCC
Q 022946 185 HQAIELKKAGLTAYNH-NLDTS-REFYSKIITTRS-YDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHTLATLP 261 (289)
Q Consensus 185 e~l~~L~~aG~~~v~i-~let~-~~~~~~i~~~~~-~~~~~~~i~~~~~~Gi~v~~~~i~Glget~ed~~~~l~~l~~l~ 261 (289)
+.+.+|+++|++++.+ +.|.+ +++++.+++++. .++|++.++.++++|+++++++|+|+|||.+|+++++..|+++|
T Consensus 152 e~l~~LkeAGl~~~~g~~aEi~~~~vr~~I~p~k~~~~~~~~i~~~a~~~Gi~~~sg~l~G~gEt~edrv~hl~~Lr~Lq 231 (353)
T PRK08444 152 EVLEDMLEYGVDSMPGGGAEIFDEEVRKKICKGKVSSERWLEIHKYWHKKGKMSNATMLFGHIENREHRIDHMLRLRDLQ 231 (353)
T ss_pred HHHHHHHHhCcccCCCCCchhcCHHHHhhhCCCCCCHHHHHHHHHHHHHcCCCccceeEEecCCCHHHHHHHHHHHHHhc
Confidence 9999999999999998 69999 999999999775 58899999999999999999999999999999999999999995
Q ss_pred CCCCeeeeccceec----CCCCCCCCCCCCC
Q 022946 262 THPESVPINALLAV----KGTPLQDQKLKYG 288 (289)
Q Consensus 262 ~~~~~v~i~~~~p~----pgTpl~~~~~~~~ 288 (289)
.++++|+.|+|. +||||++.+++++
T Consensus 232 --~~t~gf~~fIp~~f~~~~t~l~~~~~~~~ 260 (353)
T PRK08444 232 --DKTGGFNAFIPLVYQRENNYLKVEKFPSS 260 (353)
T ss_pred --cccCCceEEEecccCCCCCcCCCCCCCCH
Confidence 799999999999 9999998776553
No 7
>PRK07094 biotin synthase; Provisional
Probab=100.00 E-value=3.6e-36 Score=266.94 Aligned_cols=226 Identities=24% Similarity=0.395 Sum_probs=193.6
Q ss_pred CCHHHHHHhhCCCh---HHHHHHHHHHHHhhhCCCeeEEeEeeccccCCCCcCCCCCCCCCCCCCCCCCcCCCCHHHHHH
Q 022946 53 WSKDDIKSIYDSPV---LDLLFHGAQVHRHAHNFREVQQCTLLSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQ 129 (289)
Q Consensus 53 ls~ee~~~l~~~~~---~~l~~~a~~~~r~~~~g~~~~~~~~i~~~t~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~ 129 (289)
+|.+|++.|++.+. .+.++.+|+..|..++|+.++++++|++ |++|+++|.||+++... ....++. +++++|++
T Consensus 1 ~t~~e~~~ll~~~~~~~~~~L~~~A~~~r~~~~g~~v~~~~~i~~-s~gC~~~C~fC~~~~~~-~~~~r~~-ls~eei~~ 77 (323)
T PRK07094 1 LTRDEILELLSNDDEEELKYLFKAADEVRKKYVGDEVHLRGLIEF-SNYCRNNCLYCGLRRDN-KNIERYR-LSPEEILE 77 (323)
T ss_pred CCHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEE-CCCCCCCCEeCCcccCC-CCCcCcC-CCHHHHHH
Confidence 68999999997543 2235555566666668999999999999 99999999999987532 2223343 69999999
Q ss_pred HHHHHHHcCCcEEEEecccCCCCCCchhHHHHHHHHHHHHh-cCceEEEeCCCCCHHHHHHHHHcCCCeEecCCCch-HH
Q 022946 130 AAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRD-MGMEVCCTLGMLEKHQAIELKKAGLTAYNHNLDTS-RE 207 (289)
Q Consensus 130 ~~~~~~~~g~~~i~i~~~~~~~~ge~~~~~~l~e~i~~ik~-~~~~i~~~~g~l~~e~l~~L~~aG~~~v~i~let~-~~ 207 (289)
+++.+.+.|++.|+|+||..+. ...+++.++++.+++ .++.+..+.|.++++.++.|+++|++++.+++||. ++
T Consensus 78 ~~~~~~~~g~~~i~l~gG~~~~----~~~~~l~~l~~~i~~~~~l~i~~~~g~~~~e~l~~Lk~aG~~~v~~glEs~~~~ 153 (323)
T PRK07094 78 CAKKAYELGYRTIVLQSGEDPY----YTDEKIADIIKEIKKELDVAITLSLGERSYEEYKAWKEAGADRYLLRHETADKE 153 (323)
T ss_pred HHHHHHHCCCCEEEEecCCCCC----CCHHHHHHHHHHHHccCCceEEEecCCCCHHHHHHHHHcCCCEEEeccccCCHH
Confidence 9999999999999998754221 245788899988886 57777778888999999999999999999999999 99
Q ss_pred HHhccCCCCCHHHHHHHHHHHHHcCCceeecEEeec-CCCHHHHHHHHHHHhcCCCCCCeeeeccceecCCCCCCCCCCC
Q 022946 208 FYSKIITTRSYDERLETLKHVREAGINVCSGGIIGL-GEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQKLK 286 (289)
Q Consensus 208 ~~~~i~~~~~~~~~~~~i~~~~~~Gi~v~~~~i~Gl-get~ed~~~~l~~l~~l~~~~~~v~i~~~~p~pgTpl~~~~~~ 286 (289)
+++.+++++++++++++++.++++|+.+++++|+|+ |||.+|+.+++++++++ +++.++++.|+|.|||||++.++.
T Consensus 154 ~~~~i~~~~s~~~~~~~i~~l~~~Gi~v~~~~iiGlpget~ed~~~~l~~l~~l--~~~~v~~~~~~P~pgTpl~~~~~~ 231 (323)
T PRK07094 154 LYAKLHPGMSFENRIACLKDLKELGYEVGSGFMVGLPGQTLEDLADDILFLKEL--DLDMIGIGPFIPHPDTPLKDEKGG 231 (323)
T ss_pred HHHHhCCCCCHHHHHHHHHHHHHcCCeecceEEEECCCCCHHHHHHHHHHHHhC--CCCeeeeeccccCCCCCcccCCCC
Confidence 999999999999999999999999999999999999 99999999999999999 689999999999999999987654
Q ss_pred C
Q 022946 287 Y 287 (289)
Q Consensus 287 ~ 287 (289)
+
T Consensus 232 ~ 232 (323)
T PRK07094 232 S 232 (323)
T ss_pred C
Confidence 3
No 8
>TIGR00433 bioB biotin synthetase. Catalyzes the last step of the biotin biosynthesis pathway.
Probab=100.00 E-value=3.2e-34 Score=251.71 Aligned_cols=223 Identities=50% Similarity=0.890 Sum_probs=188.3
Q ss_pred hhCCChHHHHHHHHHHHHhhhCCCeeEEeEeeccccCCCCcCCCCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHHcCCc
Q 022946 61 IYDSPVLDLLFHGAQVHRHAHNFREVQQCTLLSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAGST 140 (289)
Q Consensus 61 l~~~~~~~l~~~a~~~~r~~~~g~~~~~~~~i~~~t~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~~g~~ 140 (289)
||+.+..+++..|+..+++.++++.+.+++++++.|++|+++|.||+++..+..+...++.+++++++++++.+.+.|++
T Consensus 1 ~~~~~~~~l~~~a~~~~~~~~~~~~v~~~~~~~i~s~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~~g~~ 80 (296)
T TIGR00433 1 LFETPLLDLLYEAFQIHRKHFDPRKVQLCTIMNIKSGGCPEDCKYCSQSSRSKTGLPIERLKKVDEVLEEARKAKAAGAT 80 (296)
T ss_pred CccCcHHHHHHHHHHHHHHhcCCCEEEEEEEEecccCCCCCCCcCCCCcccCCCCCccccCCCHHHHHHHHHHHHHCCCC
Confidence 34558889999999999998889999999999977999999999999976543233345668999999999999889999
Q ss_pred EEEEecccCCCCCCchhHHHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHcCCCeEecCCCch-HHHHhccCCCCCHH
Q 022946 141 RFCMGAAWRDTIGRKTNFNQILEYVKDIRDMGMEVCCTLGMLEKHQAIELKKAGLTAYNHNLDTS-REFYSKIITTRSYD 219 (289)
Q Consensus 141 ~i~i~~~~~~~~ge~~~~~~l~e~i~~ik~~~~~i~~~~g~l~~e~l~~L~~aG~~~v~i~let~-~~~~~~i~~~~~~~ 219 (289)
++++++++.++.. ....+.+.++.+.+++.++.+..+.|.+++|.++.|+++|++.|.+++| . ++++++++++++++
T Consensus 81 ~~~l~~~g~~~~~-~~~~~~~~~i~~~~~~~~i~~~~~~g~~~~e~l~~Lk~aG~~~v~i~~E-~~~~~~~~i~~~~s~~ 158 (296)
T TIGR00433 81 RFCLVASGRGPKD-REFMEYVEAMVQIVEEMGLKTCATLGLLDPEQAKRLKDAGLDYYNHNLD-TSQEFYSNIISTHTYD 158 (296)
T ss_pred EEEEEEecCCCCh-HHHHHHHHHHHHHHHhCCCeEEecCCCCCHHHHHHHHHcCCCEEEEccc-CCHHHHhhccCCCCHH
Confidence 9887654433322 1123344444444446788888888999999999999999999999999 6 99999999989999
Q ss_pred HHHHHHHHHHHcCCceeecEEeecCCCHHHHHHHHHHHhcCCCCCCeeeeccceecCCCCCCCCCCCC
Q 022946 220 ERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQKLKY 287 (289)
Q Consensus 220 ~~~~~i~~~~~~Gi~v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~i~~~~p~pgTpl~~~~~~~ 287 (289)
+++++++.++++|+.+++++|+|++||.+|+.++++++.++ +++.+.++.++|.|||||++.++++
T Consensus 159 ~~~~ai~~l~~~Gi~v~~~~i~Gl~et~~d~~~~~~~l~~l--~~~~i~l~~l~p~~gT~l~~~~~~s 224 (296)
T TIGR00433 159 DRVDTLENAKKAGLKVCSGGIFGLGETVEDRIGLALALANL--PPESVPINFLVKIKGTPLADNKELS 224 (296)
T ss_pred HHHHHHHHHHHcCCEEEEeEEEeCCCCHHHHHHHHHHHHhC--CCCEEEeeeeEEcCCCccCCCCCCC
Confidence 99999999999999999999999999999999999999999 6899999999999999999976654
No 9
>TIGR03700 mena_SCO4494 putative menaquinone biosynthesis protein, SCO4494 family. Members of this protein family appear to be involved in menaquinone biosynthesis by an alternate pathway via futalosine, based on close phylogenetic correlation with known markers of the futalosine pathway, gene clustering in many organisms, and paralogy with the SCO4550 protein.
Probab=100.00 E-value=7.4e-35 Score=260.26 Aligned_cols=234 Identities=20% Similarity=0.255 Sum_probs=192.3
Q ss_pred HHHHHhcCCCCCCCHHHHHHhhCCC-hHHHHHHHHHHHHhhhCCCeeEEe--EeeccccCCCCcCCCCCCCCCCCCCCCC
Q 022946 41 AERTIREGPRHDWSKDDIKSIYDSP-VLDLLFHGAQVHRHAHNFREVQQC--TLLSIKTGGCSEDCSYCPQSSRYDTGVK 117 (289)
Q Consensus 41 ~~~~~~~~~~~~ls~ee~~~l~~~~-~~~l~~~a~~~~r~~~~g~~~~~~--~~i~~~t~~C~~~C~fC~~~~~~~~~~~ 117 (289)
.+++.. +.++|.+|++.|++.+ +.+|+..|..+ |++++|+.++++ .+|++ |++|+.+|.||++++..+. ..
T Consensus 2 ~~~~~~---~~~ls~~e~~~L~~~~~~~~L~~~A~~v-r~~~~g~~v~~~~~~~in~-Tn~C~~~C~FCa~~~~~~~-~~ 75 (351)
T TIGR03700 2 REKVEA---GQRLSFEDGLFLYASDDLLTLGELAALV-RERKHGDKVYFNVNRHLNY-TNICVNGCAFCAFQRERGE-PG 75 (351)
T ss_pred chHHhC---CCCCCHHHHHHHcCCCcHHHHHHHHHHH-HHHhcCCeEEEeccCCccc-ccccccCCccCceeCCCCC-cc
Confidence 345556 8899999999999754 44555555554 565579999877 78997 9999999999999864432 23
Q ss_pred CcCCCCHHHHHHHHHHHHHcCCcEEEEecccCCCCCCchhHHHHHHHHHHHHhc--CceEEE-----------eCCCCCH
Q 022946 118 GQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDM--GMEVCC-----------TLGMLEK 184 (289)
Q Consensus 118 ~~~~~~~eei~~~~~~~~~~g~~~i~i~~~~~~~~ge~~~~~~l~e~i~~ik~~--~~~i~~-----------~~g~l~~ 184 (289)
.+. +++|+|++.++.+.+.|++++++++|.. + ...++++.++++.+|+. ++.+.. ..|..++
T Consensus 76 ~y~-l~~eeI~~~a~~~~~~G~~~v~l~~G~~-p---~~~~~~~~e~i~~Ik~~~p~i~i~~~~~~ei~~~~~~~g~~~~ 150 (351)
T TIGR03700 76 AYA-MSLEEIVARVKEAYAPGATEVHIVGGLH-P---NLPFEWYLDMIRTLKEAYPDLHVKAFTAVEIHHFSKISGLPTE 150 (351)
T ss_pred cCC-CCHHHHHHHHHHHHHCCCcEEEEecCCC-C---CCCHHHHHHHHHHHHHHCCCceEEeCCHHHHHHHHHHcCCCHH
Confidence 444 8999999999999999999999987543 2 13568899999999854 355432 2577888
Q ss_pred HHHHHHHHcCCCeEec-CCCch-HHHHhccCCCC-CHHHHHHHHHHHHHcCCceeecEEeecCCCHHHHHHHHHHHhcCC
Q 022946 185 HQAIELKKAGLTAYNH-NLDTS-REFYSKIITTR-SYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHTLATLP 261 (289)
Q Consensus 185 e~l~~L~~aG~~~v~i-~let~-~~~~~~i~~~~-~~~~~~~~i~~~~~~Gi~v~~~~i~Glget~ed~~~~l~~l~~l~ 261 (289)
+.+++|+++|++++.+ ++|+. +++++++++++ +.++++++++.++++|+++++++|+|+|||++|+.+++..++++
T Consensus 151 e~l~~LkeAGld~~~~~g~E~~~~~v~~~i~~~~~~~~~~l~~i~~a~~~Gi~~~sg~i~GlgEt~edrv~~l~~Lr~l- 229 (351)
T TIGR03700 151 EVLDELKEAGLDSMPGGGAEIFAEEVRQQICPEKISAERWLEIHRTAHELGLKTNATMLYGHIETPAHRVDHMLRLREL- 229 (351)
T ss_pred HHHHHHHHcCCCcCCCCcccccCHHHHhhcCCCCCCHHHHHHHHHHHHHcCCCcceEEEeeCCCCHHHHHHHHHHHHHh-
Confidence 9999999999999985 99999 99999999975 67899999999999999999999999999999999999999999
Q ss_pred CCCCeeeeccceec----CCCCCCCC--CCCC
Q 022946 262 THPESVPINALLAV----KGTPLQDQ--KLKY 287 (289)
Q Consensus 262 ~~~~~v~i~~~~p~----pgTpl~~~--~~~~ 287 (289)
++++.+|+.|+|+ +||||++. ++++
T Consensus 230 -~~~~~~f~~fiP~~f~~~~tpl~~~~~~~~~ 260 (351)
T TIGR03700 230 -QDETGGFQAFIPLAFQPDNNRLNRLLAKGPT 260 (351)
T ss_pred -hHhhCCceEEEeecccCCCCcccCCCCCCCC
Confidence 4788899999998 59999876 5443
No 10
>PRK09240 thiH thiamine biosynthesis protein ThiH; Reviewed
Probab=100.00 E-value=3.7e-34 Score=257.01 Aligned_cols=237 Identities=21% Similarity=0.287 Sum_probs=196.8
Q ss_pred HHHHHHhcCCCCCCCHHHHHHhhCC---ChHHHHHHHHHHHHhhhCCCeeEEeEeeccccCCCCcCCCCCCCCCCCCCCC
Q 022946 40 EAERTIREGPRHDWSKDDIKSIYDS---PVLDLLFHGAQVHRHAHNFREVQQCTLLSIKTGGCSEDCSYCPQSSRYDTGV 116 (289)
Q Consensus 40 ~~~~~~~~~~~~~ls~ee~~~l~~~---~~~~l~~~a~~~~r~~~~g~~~~~~~~i~~~t~~C~~~C~fC~~~~~~~~~~ 116 (289)
-.+++.+ ++.||.+|+..|++. +..+.+..+|+..|..++|++++++..+++ |++|+.+|.||+++..++ .
T Consensus 26 ~~~~il~---g~~ls~ee~~~Ll~~~~~~~l~~L~~~A~~ir~~~~G~~v~l~~~in~-Tn~C~~~C~YC~f~~~~~--~ 99 (371)
T PRK09240 26 DVERALN---KDRLSLEDLMALLSPAAEPYLEEMAQKAQRLTRQRFGNTISLYTPLYL-SNYCANDCTYCGFSMSNK--I 99 (371)
T ss_pred HHHHHHh---cCCCCHHHHHHHhCCCChhHHHHHHHHHHHHHHHHcCCEEEEEeceEE-cccccCcCCcCCCCCCCC--C
Confidence 3455556 789999999999974 345556666666666667999999999998 999999999999986543 2
Q ss_pred CCcCCCCHHHHHHHHHHHHHcCCcEEEEecccCCCCCCchhHHHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHcCCC
Q 022946 117 KGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMGMEVCCTLGMLEKHQAIELKKAGLT 196 (289)
Q Consensus 117 ~~~~~~~~eei~~~~~~~~~~g~~~i~i~~~~~~~~ge~~~~~~l~e~i~~ik~~~~~i~~~~g~l~~e~l~~L~~aG~~ 196 (289)
. .+.+++|||+++++.+.+.|+++|+++||. .+. ...++++.++++.+++....+.++.+.++.+.++.|+++|++
T Consensus 100 ~-~~~ls~eEI~~~a~~~~~~Gv~~i~lvgGe-~p~--~~~~e~l~~~i~~Ik~~~p~i~i~~g~lt~e~l~~Lk~aGv~ 175 (371)
T PRK09240 100 K-RKTLDEEEIEREMAAIKKLGFEHILLLTGE-HEA--KVGVDYIRRALPIAREYFSSVSIEVQPLSEEEYAELVELGLD 175 (371)
T ss_pred c-cccCCHHHHHHHHHHHHhCCCCEEEEeeCC-CCC--CCCHHHHHHHHHHHHHhCCCceeccCCCCHHHHHHHHHcCCC
Confidence 2 356899999999999999999999998843 222 246789999999998543344556678999999999999999
Q ss_pred eEecCCCch-HHHHhccCC---CCCHHHHHHHHHHHHHcCCc-eeecEEeecCCCHHHHHHHHHHHhcCCC----CCCee
Q 022946 197 AYNHNLDTS-REFYSKIIT---TRSYDERLETLKHVREAGIN-VCSGGIIGLGEAEEDRVGLLHTLATLPT----HPESV 267 (289)
Q Consensus 197 ~v~i~let~-~~~~~~i~~---~~~~~~~~~~i~~~~~~Gi~-v~~~~i~Glget~ed~~~~l~~l~~l~~----~~~~v 267 (289)
++++++||+ ++.|+.+++ ++++++++++++.++++|+. +++++|+|+||+.+|+.+++..++.|+. .+.+|
T Consensus 176 r~~i~lET~~~~~~~~i~~~g~~h~~~~rl~~i~~a~~aG~~~v~~g~i~Glge~~~d~~~~a~~l~~L~~~~~~~~~sv 255 (371)
T PRK09240 176 GVTVYQETYNPATYAKHHLRGPKRDFEYRLETPERAGRAGIRKIGLGALLGLSDWRTDALMTALHLRYLQRKYWQAEYSI 255 (371)
T ss_pred EEEEEEecCCHHHHHHhCcCCCCCCHHHHHHHHHHHHHcCCCeeceEEEecCCccHHHHHHHHHHHHHHHHhCCCCceee
Confidence 999999999 999999984 67999999999999999996 9999999999999999999998888742 12479
Q ss_pred eeccceecCCCCCCCCCCCC
Q 022946 268 PINALLAVKGTPLQDQKLKY 287 (289)
Q Consensus 268 ~i~~~~p~pgTpl~~~~~~~ 287 (289)
+|+.|+|.+| |+++.++++
T Consensus 256 ~~~~l~P~~g-~~~~~~~~~ 274 (371)
T PRK09240 256 SFPRLRPCTG-GIEPASIVS 274 (371)
T ss_pred ecCccccCCC-CCCCCCCCC
Confidence 9999999999 998877665
No 11
>PRK07360 FO synthase subunit 2; Reviewed
Probab=100.00 E-value=2.9e-34 Score=257.96 Aligned_cols=240 Identities=19% Similarity=0.257 Sum_probs=197.8
Q ss_pred cchHHHHHHHHHhcCCCCCCCHHHHHHhhCCC---hHHHHHHHHHHHHhhhCCCeeEE--eEeeccccCCCCcCCCCCCC
Q 022946 34 ASAAAIEAERTIREGPRHDWSKDDIKSIYDSP---VLDLLFHGAQVHRHAHNFREVQQ--CTLLSIKTGGCSEDCSYCPQ 108 (289)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~ls~ee~~~l~~~~---~~~l~~~a~~~~r~~~~g~~~~~--~~~i~~~t~~C~~~C~fC~~ 108 (289)
++.+..+.+++.. ++++|.+|++.|++.+ ..+.+..+|+..|++++|+.+++ +..|++ ||.|+.+|.||++
T Consensus 4 ~~~~~~~~~~~~~---g~~ls~~e~~~Ll~~~~~~~l~~L~~~A~~ir~~~~G~~v~~~~~~~i~~-Tn~C~~~C~fC~~ 79 (371)
T PRK07360 4 DQIFEDILERARK---GKDLSKEDALELLETTEPRRIFEILELADRLRKEQVGDTVTYVVNRNINF-TNICEGHCGFCAF 79 (371)
T ss_pred hHHHHHHHHHHhc---CCCCCHHHHHHHhcCCChHHHHHHHHHHHHHHHHhcCCeEEEEeccCccc-chhhhcCCccCCc
Confidence 3456778888888 9999999999999754 25556666676677778999987 456787 9999999999999
Q ss_pred CCCCCCCCCCcCCCCHHHHHHHHHHHHHcCCcEEEEecccCCCCCCchhHHHHHHHHHHHHhc--CceEEE---------
Q 022946 109 SSRYDTGVKGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDM--GMEVCC--------- 177 (289)
Q Consensus 109 ~~~~~~~~~~~~~~~~eei~~~~~~~~~~g~~~i~i~~~~~~~~ge~~~~~~l~e~i~~ik~~--~~~i~~--------- 177 (289)
+... ....++. ++.|+|++.++.+.+.|+++|+|+||. .+.. ...+++.++++.+|+. ++.++.
T Consensus 80 ~~~~-~~~~~y~-ls~eeI~~~a~~a~~~G~~~i~l~~G~-~p~~--~~~e~~~~~i~~ik~~~~~i~i~a~s~~ei~~~ 154 (371)
T PRK07360 80 RRDE-GDHGAFW-LTIAEILEKAAEAVKRGATEVCIQGGL-HPAA--DSLEFYLEILEAIKEEFPDIHLHAFSPMEVYFA 154 (371)
T ss_pred ccCC-CCCCCee-CCHHHHHHHHHHHHhCCCCEEEEccCC-CCCC--CcHHHHHHHHHHHHHhCCCcceeeCCHHHHHHH
Confidence 8653 2334454 899999999999999999999999753 2211 2378899999999853 455543
Q ss_pred --eCCCCCHHHHHHHHHcCCCeEe-cCCCch-HHHHhccCCCC-CHHHHHHHHHHHHHcCCceeecEEeecCCCHHHHHH
Q 022946 178 --TLGMLEKHQAIELKKAGLTAYN-HNLDTS-REFYSKIITTR-SYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVG 252 (289)
Q Consensus 178 --~~g~l~~e~l~~L~~aG~~~v~-i~let~-~~~~~~i~~~~-~~~~~~~~i~~~~~~Gi~v~~~~i~Glget~ed~~~ 252 (289)
+.|..+.+.+++|++||++++. .+.+.. +++++.+++++ +.++|+++++.++++|+++++++|+|+|||.+|+++
T Consensus 155 ~~~~G~~~~e~l~~LkeAGld~~~~t~~e~l~~~vr~~i~p~~~s~~~~l~~i~~a~~~Gl~~~sg~i~G~gEt~edrv~ 234 (371)
T PRK07360 155 AREDGLSYEEVLKALKDAGLDSMPGTAAEILVDEVRRIICPEKIKTAEWIEIVKTAHKLGLPTTSTMMYGHVETPEHRID 234 (371)
T ss_pred HhhcCCCHHHHHHHHHHcCCCcCCCcchhhccHHHHHhhCCCCCCHHHHHHHHHHHHHcCCCceeeEEeeCCCCHHHHHH
Confidence 4688889999999999999997 356666 78888888865 899999999999999999999999999999999999
Q ss_pred HHHHHhcCCCCCCeeeeccceecC----CCCCCCCC
Q 022946 253 LLHTLATLPTHPESVPINALLAVK----GTPLQDQK 284 (289)
Q Consensus 253 ~l~~l~~l~~~~~~v~i~~~~p~p----gTpl~~~~ 284 (289)
++.+++++ +++.++|..|+|.| ||||++.+
T Consensus 235 ~l~~lr~l--~~~~~g~~~fIp~~f~~~~Tpl~~~~ 268 (371)
T PRK07360 235 HLLILREI--QQETGGITEFVPLPFVHENAPLYERG 268 (371)
T ss_pred HHHHHHHh--chhhCCeeEEEeccccCCCCcccccc
Confidence 99999999 57899999999955 99998764
No 12
>PRK09613 thiH thiamine biosynthesis protein ThiH; Reviewed
Probab=100.00 E-value=1.4e-33 Score=257.08 Aligned_cols=240 Identities=21% Similarity=0.345 Sum_probs=203.0
Q ss_pred hHHHHHHHHHhcCCCCCCCHHHHHHhhCCC---hHHHHHHHHHHHHhhhCCCeeEEeEeeccccCCCCcCCCCCCCCCCC
Q 022946 36 AAAIEAERTIREGPRHDWSKDDIKSIYDSP---VLDLLFHGAQVHRHAHNFREVQQCTLLSIKTGGCSEDCSYCPQSSRY 112 (289)
Q Consensus 36 ~~~~~~~~~~~~~~~~~ls~ee~~~l~~~~---~~~l~~~a~~~~r~~~~g~~~~~~~~i~~~t~~C~~~C~fC~~~~~~ 112 (289)
.+..+.+++.. +++||.+|+..|++.+ ..+.++.+|+..|++++|+++.++.++++ ||.|+.+|.||+|+...
T Consensus 32 ~v~~il~Kal~---~~~Ls~eEal~LL~~~~~~~le~L~~~A~~ir~~~~Gn~I~lfapLyi-SN~C~n~C~YCgfs~~n 107 (469)
T PRK09613 32 EIREILEKAKE---KKGLSPEEAAVLLNVEDPELLEEIFEAAREIKEKIYGNRIVLFAPLYI-SNYCVNNCVYCGFRRSN 107 (469)
T ss_pred HHHHHHHHHHc---CCCCCHHHHHHHHcCCChhHHHHHHHHHHHHHHHHcCCEEEEEEeccc-cCCCCCCCccCCCccCC
Confidence 36666777766 9999999999999753 45667777777777778999999999998 99999999999998643
Q ss_pred CCCCCCcCCCCHHHHHHHHHHHHHcCCcEEEEecccCCCCCCchhHHHHHHHHHHHHhc----C-c-eEEEeCCCCCHHH
Q 022946 113 DTGVKGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDM----G-M-EVCCTLGMLEKHQ 186 (289)
Q Consensus 113 ~~~~~~~~~~~~eei~~~~~~~~~~g~~~i~i~~~~~~~~ge~~~~~~l~e~i~~ik~~----~-~-~i~~~~g~l~~e~ 186 (289)
....++ .++.|||+++++.+.+.|++++++++|...+ ...++++.++++.+++. + + .+.++.|.++.+.
T Consensus 108 -~~i~r~-~Ls~EEI~~ea~~~~~~G~~~i~LvsGe~p~---~~~~eyi~e~i~~I~~~~~~~g~i~~v~inig~lt~ee 182 (469)
T PRK09613 108 -KEIKRK-KLTQEEIREEVKALEDMGHKRLALVAGEDPP---NCDIEYILESIKTIYSTKHGNGEIRRVNVNIAPTTVEN 182 (469)
T ss_pred -CCCCce-ECCHHHHHHHHHHHHHCCCCEEEEEeCCCCC---CCCHHHHHHHHHHHHHhccccCcceeeEEEeecCCHHH
Confidence 333444 5899999999999999999999998654322 24678899999988853 2 2 4677889999999
Q ss_pred HHHHHHcCCCeEecCCCch-HHHHhccCC---CCCHHHHHHHHHHHHHcCCc-eeecEEeecCCCHHHHHHHHHHHhcC-
Q 022946 187 AIELKKAGLTAYNHNLDTS-REFYSKIIT---TRSYDERLETLKHVREAGIN-VCSGGIIGLGEAEEDRVGLLHTLATL- 260 (289)
Q Consensus 187 l~~L~~aG~~~v~i~let~-~~~~~~i~~---~~~~~~~~~~i~~~~~~Gi~-v~~~~i~Glget~ed~~~~l~~l~~l- 260 (289)
+++|+++|++++.+..||+ +++|+++++ +++|++++++++.++++|+. |++++|+|++++.+|...++..++.|
T Consensus 183 y~~LkeaGv~~~~l~qETY~~ety~~~hp~g~k~~y~~Rl~t~~rA~~aGi~~Vg~G~L~GLge~~~E~~~l~~hl~~L~ 262 (469)
T PRK09613 183 YKKLKEAGIGTYQLFQETYHKPTYEKMHPSGPKSDYDWRLTAMDRAMEAGIDDVGIGVLFGLYDYKFEVLGLLMHAEHLE 262 (469)
T ss_pred HHHHHHcCCCEEEeccccCCHHHHHhcCCCCCCCCHHHHHHHHHHHHHcCCCeeCeEEEEcCCCCHHHHHHHHHHHHHHH
Confidence 9999999999999999999 999999876 57899999999999999997 99999999999999999998888777
Q ss_pred ---CCCCCeeeeccceecCCCCCCCCC
Q 022946 261 ---PTHPESVPINALLAVKGTPLQDQK 284 (289)
Q Consensus 261 ---~~~~~~v~i~~~~p~pgTpl~~~~ 284 (289)
+.+|+.|++..|.|.+||||++.+
T Consensus 263 ~~~gvgp~tIsvprl~P~~Gtpl~~~~ 289 (469)
T PRK09613 263 ERFGVGPHTISVPRLRPADGSDLENFP 289 (469)
T ss_pred HhhCCCCccccccceecCCCCCcccCC
Confidence 224788999999999999998765
No 13
>PRK05926 hypothetical protein; Provisional
Probab=100.00 E-value=9.7e-34 Score=252.67 Aligned_cols=235 Identities=17% Similarity=0.152 Sum_probs=193.4
Q ss_pred hHHHHHHHHHhcCCCCCCCHHHHHHhhCC---ChHHHHHHHHHHHHhhhCCCeeEEeEeecc-ccCCCCcCCCCCCCCCC
Q 022946 36 AAAIEAERTIREGPRHDWSKDDIKSIYDS---PVLDLLFHGAQVHRHAHNFREVQQCTLLSI-KTGGCSEDCSYCPQSSR 111 (289)
Q Consensus 36 ~~~~~~~~~~~~~~~~~ls~ee~~~l~~~---~~~~l~~~a~~~~r~~~~g~~~~~~~~i~~-~t~~C~~~C~fC~~~~~ 111 (289)
.+..+.+++.. ++++|.+|+..|++. +....+..+|+..|++++|+.++++.++++ +||.|..+|.||++...
T Consensus 14 ~~~~~~~kv~~---g~~ls~eeal~Ll~~~~~~~l~~L~~~A~~iR~~~~G~~V~~~~~~nin~Tn~C~~dC~FCaf~~~ 90 (370)
T PRK05926 14 WLKTLFDDYLS---GARLSEEDALQLLLLTDAEDQRALWSFADLIRANRVGDTVYYSSTLYLYPTNFCQFNCTFCSFYAK 90 (370)
T ss_pred HHHHHHHHHHc---CCCCCHHHHHHHHhCCCchHHHHHHHHHHHHHHHhcCCeEEEEEeeeeecCCCCCCCCCccccccC
Confidence 45668888888 899999999999843 334444444454566667999999987765 59999999999998743
Q ss_pred CCCCCCCcCCCCHHHHHHHHHHHHHcCCcEEEEecccCCCCCCchhHHHHHHHHHHHHhc--CceEEEeC----------
Q 022946 112 YDTGVKGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDM--GMEVCCTL---------- 179 (289)
Q Consensus 112 ~~~~~~~~~~~~~eei~~~~~~~~~~g~~~i~i~~~~~~~~ge~~~~~~l~e~i~~ik~~--~~~i~~~~---------- 179 (289)
.+...++.+++|+|++.++.+ ..|+++|+|++|. .+ ...++++.++++.+++. ++.++...
T Consensus 91 --~~~~~~~~ls~eeI~~~a~~a-~~G~~ei~iv~G~-~p---~~~~e~~~e~i~~Ik~~~p~i~i~a~s~~Ei~~~~~~ 163 (370)
T PRK05926 91 --PGDPKGWFYTPDQLVQSIKEN-PSPITETHIVAGC-FP---SCNLAYYEELFSKIKQNFPDLHIKALTAIEYAYLSKL 163 (370)
T ss_pred --CCCcccccCCHHHHHHHHHHH-hcCCCEEEEEeCc-CC---CCCHHHHHHHHHHHHHhCCCeeEEECCHHHHHHHHhh
Confidence 233455669999999999988 6899999999743 33 24678999999999954 46554332
Q ss_pred -CCCCHHHHHHHHHcCCCeEec-CCCch-HHHHhccCCCC-CHHHHHHHHHHHHHcCCceeecEEeecCCCHHHHHHHHH
Q 022946 180 -GMLEKHQAIELKKAGLTAYNH-NLDTS-REFYSKIITTR-SYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLH 255 (289)
Q Consensus 180 -g~l~~e~l~~L~~aG~~~v~i-~let~-~~~~~~i~~~~-~~~~~~~~i~~~~~~Gi~v~~~~i~Glget~ed~~~~l~ 255 (289)
+..+++++++|+++|++++.+ |.|+. +++++.++++. +.++|+++++.++++|+++++++|+|+|||.+|+++++.
T Consensus 164 ~~~~~~e~l~~LkeAGl~~~~g~GaEi~~e~~r~~~~p~~~t~~e~l~~i~~a~~~Gi~~~sgmi~G~gEt~edrv~~l~ 243 (370)
T PRK05926 164 DNLPVKEVLQTLKIAGLDSIPGGGAEILVDEIRETLAPGRLSSQGFLEIHKTAHSLGIPSNATMLCYHRETPEDIVTHMS 243 (370)
T ss_pred cCCCHHHHHHHHHHcCcCccCCCCchhcCHHHHHhhCCCCCCHHHHHHHHHHHHHcCCcccCceEEeCCCCHHHHHHHHH
Confidence 346788899999999999998 59999 99999998854 789999999999999999999999999999999999999
Q ss_pred HHhcCCCCCCeeeecccee----cCCCCCCC
Q 022946 256 TLATLPTHPESVPINALLA----VKGTPLQD 282 (289)
Q Consensus 256 ~l~~l~~~~~~v~i~~~~p----~pgTpl~~ 282 (289)
.|+++ ++++++|..|+| .++|||..
T Consensus 244 ~Lr~L--q~~t~gf~~fIp~~f~~~~t~l~~ 272 (370)
T PRK05926 244 KLRAL--QDKTSGFKNFILLKFASENNALGK 272 (370)
T ss_pred HHHhc--CCccCCeeeeEecccCCCCCcccc
Confidence 99999 589999999999 77899864
No 14
>PRK08508 biotin synthase; Provisional
Probab=100.00 E-value=2.4e-33 Score=242.84 Aligned_cols=195 Identities=39% Similarity=0.719 Sum_probs=174.3
Q ss_pred CeeEEeEeeccccCCCCcCCCCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHHcCCcEEEEecccCCCCCCchhHHHHHH
Q 022946 84 REVQQCTLLSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILE 163 (289)
Q Consensus 84 ~~~~~~~~i~~~t~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~~g~~~i~i~~~~~~~~ge~~~~~~l~e 163 (289)
|++.+++++++.|++|+.+|.||+++..++.....++.+++|+|++.++.+.+.|+++|++++++... . +..++++.+
T Consensus 2 ~~~~~~~i~~~~s~gC~~~C~FCa~~~~~~~~~~~y~~~s~eeI~~~a~~a~~~g~~~~~lv~sg~~~-~-~~~~e~~~e 79 (279)
T PRK08508 2 KEIFLCAISNISSGNCKEDCKYCTQSAHYKADIKRYKRKDIEQIVQEAKMAKANGALGFCLVTSGRGL-D-DKKLEYVAE 79 (279)
T ss_pred CeEEEEEEeccccCCCCCCCcCCCCcccCCCCCccccCCCHHHHHHHHHHHHHCCCCEEEEEeccCCC-C-cccHHHHHH
Confidence 67899999999999999999999998755444456666899999999999999999999986544322 2 347789999
Q ss_pred HHHHHHhc--CceEEEeCCCCCHHHHHHHHHcCCCeEecCCCchHHHHhccCCCCCHHHHHHHHHHHHHcCCceeecEEe
Q 022946 164 YVKDIRDM--GMEVCCTLGMLEKHQAIELKKAGLTAYNHNLDTSREFYSKIITTRSYDERLETLKHVREAGINVCSGGII 241 (289)
Q Consensus 164 ~i~~ik~~--~~~i~~~~g~l~~e~l~~L~~aG~~~v~i~let~~~~~~~i~~~~~~~~~~~~i~~~~~~Gi~v~~~~i~ 241 (289)
+++.+|+. ++.++.++|.++.+.+++|+++|++++.+++|+.++.|+++++++++++++++++.++++|+++++++|+
T Consensus 80 i~~~ik~~~p~l~i~~s~G~~~~e~l~~Lk~aGld~~~~~lEt~~~~~~~i~~~~~~~~~l~~i~~a~~~Gi~v~sg~I~ 159 (279)
T PRK08508 80 AAKAVKKEVPGLHLIACNGTASVEQLKELKKAGIFSYNHNLETSKEFFPKICTTHTWEERFQTCENAKEAGLGLCSGGIF 159 (279)
T ss_pred HHHHHHhhCCCcEEEecCCCCCHHHHHHHHHcCCCEEcccccchHHHhcCCCCCCCHHHHHHHHHHHHHcCCeecceeEE
Confidence 99999854 5667778999999999999999999999999999889999999999999999999999999999999999
Q ss_pred ecCCCHHHHHHHHHHHhcCCCCCCeeeeccceecCCCCCCC
Q 022946 242 GLGEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQD 282 (289)
Q Consensus 242 Glget~ed~~~~l~~l~~l~~~~~~v~i~~~~p~pgTpl~~ 282 (289)
|+|||.+|+.+++.+++++ ++++|+++.|.|.||||+++
T Consensus 160 GlGEt~ed~~~~l~~lr~L--~~~svpl~~~~p~~~t~~~~ 198 (279)
T PRK08508 160 GLGESWEDRISFLKSLASL--SPHSTPINFFIPNPALPLKA 198 (279)
T ss_pred ecCCCHHHHHHHHHHHHcC--CCCEEeeCCcCCCCCCCCCC
Confidence 9999999999999999999 58899999999999999975
No 15
>TIGR03551 F420_cofH 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, CofH subunit. This enzyme, together with CofG, complete the biosynthesis of 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, the chromophore of coenzyme F420. The chromophore is also used in cyanobacteria DNA photolyases.
Probab=100.00 E-value=2.1e-33 Score=250.42 Aligned_cols=222 Identities=20% Similarity=0.289 Sum_probs=183.1
Q ss_pred CCHHHHHHhhCC-ChHHHHHHHHHHHHhhhCCCeeEE--eEeeccccCCCCcCCCCCCCCCCCCCCCCCcCCCCHHHHHH
Q 022946 53 WSKDDIKSIYDS-PVLDLLFHGAQVHRHAHNFREVQQ--CTLLSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQ 129 (289)
Q Consensus 53 ls~ee~~~l~~~-~~~~l~~~a~~~~r~~~~g~~~~~--~~~i~~~t~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~ 129 (289)
+|++|++.||+. +..+.+..+|+..|++++|+++++ +..+++ |++|+.+|.||+++... .....+. +++|+|++
T Consensus 1 ls~~e~~~ll~~~~~~~~L~~~A~~ir~~~~g~~v~~~~~~~i~~-T~~C~~~C~FC~~~~~~-~~~~~y~-ls~eeI~e 77 (343)
T TIGR03551 1 ITKEEALELFEARGNLFELFRLADELRRDIVGDTVTYVVNRNINF-TNVCYGGCGFCAFRKRK-GDADAYL-LSLEEIAE 77 (343)
T ss_pred CCHHHHHHHHhCCChHHHHHHHHHHHHHHhcCCeEEEEeeecccc-ccccccCCccCCCccCC-CCCCccc-CCHHHHHH
Confidence 689999999965 444445555555566667999986 456777 99999999999998543 2223344 89999999
Q ss_pred HHHHHHHcCCcEEEEecccCCCCCCchhHHHHHHHHHHHHhc--CceEEE-----------eCCCCCHHHHHHHHHcCCC
Q 022946 130 AAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDM--GMEVCC-----------TLGMLEKHQAIELKKAGLT 196 (289)
Q Consensus 130 ~~~~~~~~g~~~i~i~~~~~~~~ge~~~~~~l~e~i~~ik~~--~~~i~~-----------~~g~l~~e~l~~L~~aG~~ 196 (289)
+++.+.+.|+++|+|+||.. + ....+++.++++.+++. ++.+.+ +.|.++++.+++|++||++
T Consensus 78 ~~~~~~~~G~~~i~l~gG~~-p---~~~~~~~~~i~~~Ik~~~~~i~~~~~t~~ei~~~~~~~g~~~~e~l~~LkeAGl~ 153 (343)
T TIGR03551 78 RAAEAWKAGATEVCIQGGIH-P---DLDGDFYLDILRAVKEEVPGMHIHAFSPMEVYYGARNSGLSVEEALKRLKEAGLD 153 (343)
T ss_pred HHHHHHHCCCCEEEEEeCCC-C---CCCHHHHHHHHHHHHHHCCCceEEecCHHHHHHHHHHcCCCHHHHHHHHHHhCcc
Confidence 99999999999999996532 2 13567888888888854 455443 4688899999999999999
Q ss_pred eEe-cCCCch-HHHHhccCCCC-CHHHHHHHHHHHHHcCCceeecEEeecCCCHHHHHHHHHHHhcCCCCCCeeeeccce
Q 022946 197 AYN-HNLDTS-REFYSKIITTR-SYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALL 273 (289)
Q Consensus 197 ~v~-i~let~-~~~~~~i~~~~-~~~~~~~~i~~~~~~Gi~v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~i~~~~ 273 (289)
++. .+.|+. +++++++++++ ++++++++++.++++|+++++++|+|++||.+|+.+++.+++++ +++..+|..|+
T Consensus 154 ~i~~~~~E~~~~~v~~~i~~~~~~~~~~~~~i~~a~~~Gi~v~s~~i~G~~Et~ed~~~~l~~lr~l--~~~~~~~~~~i 231 (343)
T TIGR03551 154 SMPGTAAEILDDEVRKVICPDKLSTAEWIEIIKTAHKLGIPTTATIMYGHVETPEHWVDHLLILREI--QEETGGFTEFV 231 (343)
T ss_pred cccCcchhhcCHHHHHhcCCCCCCHHHHHHHHHHHHHcCCcccceEEEecCCCHHHHHHHHHHHHHh--hHHhCCeeEEE
Confidence 998 477998 99999999976 99999999999999999999999999999999999999999999 57888999999
Q ss_pred ecC----CCCCCCC
Q 022946 274 AVK----GTPLQDQ 283 (289)
Q Consensus 274 p~p----gTpl~~~ 283 (289)
|+| ||||++.
T Consensus 232 P~~f~~~gT~l~~~ 245 (343)
T TIGR03551 232 PLPFVHYNAPLYLK 245 (343)
T ss_pred eccccCCCCccccc
Confidence 976 9999853
No 16
>TIGR02351 thiH thiazole biosynthesis protein ThiH. Members this protein family are the ThiH protein of thiamine biosynthesis, a homolog of the BioB protein of biotin biosynthesis. Genes for the this protein generally are found in operons with other thiamin biosynthesis genes.
Probab=100.00 E-value=9.7e-33 Score=247.62 Aligned_cols=238 Identities=18% Similarity=0.253 Sum_probs=194.0
Q ss_pred HHHHHHHhcCCCCCCCHHHHHHhhCCC---hHHHHHHHHHHHHhhhCCCeeEEeEeeccccCCCCcCCCCCCCCCCCCCC
Q 022946 39 IEAERTIREGPRHDWSKDDIKSIYDSP---VLDLLFHGAQVHRHAHNFREVQQCTLLSIKTGGCSEDCSYCPQSSRYDTG 115 (289)
Q Consensus 39 ~~~~~~~~~~~~~~ls~ee~~~l~~~~---~~~l~~~a~~~~r~~~~g~~~~~~~~i~~~t~~C~~~C~fC~~~~~~~~~ 115 (289)
.-.+++.+ ++.+|.+|+..|++.+ ..+.+..+|...|.+++|+.+.++.++++ |+.|+++|.||+++..++
T Consensus 24 ~~~~~~l~---g~~ls~~e~~~Ll~~~~~~~l~~L~~~A~~ir~~~~G~~v~l~~~i~~-Tn~C~~~C~yC~~s~~~~-- 97 (366)
T TIGR02351 24 ADVERALN---KRHLSLEDFLALLSPAAEPYLEEMAQKAKKLTRKRFGNTISLFTPLYL-SNYCSNKCVYCGFSMSNK-- 97 (366)
T ss_pred HHHHHHHh---CCCCCHHHHHHHhCCCchHHHHHHHHHHHHHHHHHcCCEEEEEeeeeE-CccccCCCCcCCCCCCCC--
Confidence 34555556 8999999999999753 34445555555566667999999989996 999999999999986432
Q ss_pred CCCcCCCCHHHHHHHHHHHHHcCCcEEEEecccCCCCCCchhHHHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHcCC
Q 022946 116 VKGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMGMEVCCTLGMLEKHQAIELKKAGL 195 (289)
Q Consensus 116 ~~~~~~~~~eei~~~~~~~~~~g~~~i~i~~~~~~~~ge~~~~~~l~e~i~~ik~~~~~i~~~~g~l~~e~l~~L~~aG~ 195 (289)
..+ ..++.|+|.+.++.+.+.|+++|+++||. .+. ...++++.++++.+++....+.+..+.++.+.++.|+++|+
T Consensus 98 ~~~-~~Ls~eEI~~~a~~~~~~Gv~~i~lvgGe-~p~--~~~~e~l~eii~~Ik~~~p~i~Iei~~lt~e~~~~Lk~aGv 173 (366)
T TIGR02351 98 IKR-KKLNEEEIEREIEAIKKSGFKEILLVTGE-SEK--AAGVEYIAEAIKLAREYFSSLAIEVQPLNEEEYKKLVEAGL 173 (366)
T ss_pred Ccc-CcCCHHHHHHHHHHHHhCCCCEEEEeeCC-CCC--CCCHHHHHHHHHHHHHhCCccccccccCCHHHHHHHHHcCC
Confidence 233 55899999999999999999999998643 221 24678999999999864322223345699999999999999
Q ss_pred CeEecCCCch-HHHHhccC---CCCCHHHHHHHHHHHHHcCCc-eeecEEeecCCCHHHHHHHHHHHhcCCC----CCCe
Q 022946 196 TAYNHNLDTS-REFYSKII---TTRSYDERLETLKHVREAGIN-VCSGGIIGLGEAEEDRVGLLHTLATLPT----HPES 266 (289)
Q Consensus 196 ~~v~i~let~-~~~~~~i~---~~~~~~~~~~~i~~~~~~Gi~-v~~~~i~Glget~ed~~~~l~~l~~l~~----~~~~ 266 (289)
+++++++||+ ++.|+.++ +++++++++++++.++++|+. +++++|+|++++.+|..+++..++.|+. ...+
T Consensus 174 ~r~~i~lET~~~~~y~~i~~~g~~h~~~~rl~~i~~a~~aG~~~v~~g~i~Gl~e~~~d~~~~a~~l~~L~~~~~~~~~s 253 (366)
T TIGR02351 174 DGVTVYQETYNEKKYKKHHLAGKKKDFRYRLNTPERAAKAGMRKIGIGALLGLDDWRTDAFFTAYHLRYLQKKYWKTEIS 253 (366)
T ss_pred CEEEEEeecCCHHHHHhcCcCCCCCCHHHHHHHHHHHHHcCCCeeceeEEEeCchhHHHHHHHHHHHHHHHHHcCCCCcc
Confidence 9999999999 99999998 567999999999999999997 9999999999999999998888877742 1368
Q ss_pred eeeccceecCCCCCCCCCCCC
Q 022946 267 VPINALLAVKGTPLQDQKLKY 287 (289)
Q Consensus 267 v~i~~~~p~pgTpl~~~~~~~ 287 (289)
|+++.++|.+| |++..++++
T Consensus 254 v~~~~l~P~~g-~~~~~~~l~ 273 (366)
T TIGR02351 254 ISVPRLRPCTN-GLKPKVIVT 273 (366)
T ss_pred ccccccccCCC-CCCCCCcCC
Confidence 99999999999 998876654
No 17
>PRK05927 hypothetical protein; Provisional
Probab=100.00 E-value=3.1e-33 Score=247.95 Aligned_cols=226 Identities=15% Similarity=0.139 Sum_probs=184.7
Q ss_pred CCCCCCHHHHHHhhCCC-hHHHHHHHHHHHHhhhCCCeeE--EeEeeccccCCCCcCCCCCCCCCCCCCCCCCcCCCCHH
Q 022946 49 PRHDWSKDDIKSIYDSP-VLDLLFHGAQVHRHAHNFREVQ--QCTLLSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKD 125 (289)
Q Consensus 49 ~~~~ls~ee~~~l~~~~-~~~l~~~a~~~~r~~~~g~~~~--~~~~i~~~t~~C~~~C~fC~~~~~~~~~~~~~~~~~~e 125 (289)
.++++|.+|++.|++.+ +.+|...|..++++++.|+.++ ++..+++ ||.|+.+|.||+++...+ ...+ +.++.|
T Consensus 3 ~~~~is~ee~l~L~~~~~l~~L~~~A~~iR~~~~~G~~V~~i~n~~i~~-Tn~C~~~C~fCaf~~~~~-~~~~-y~ls~e 79 (350)
T PRK05927 3 LPARISFQEGLELFLYSPLEELQEHADSLRKQRYPQNTVTYVLDANPNY-TNICKIDCTFCAFYRKPH-SSDA-YLLSFD 79 (350)
T ss_pred CccCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCeEEEEcccCCcc-chhhhcCCccCCccCCCC-Cccc-cccCHH
Confidence 37899999999999654 4555555555544443378888 4566777 999999999999986432 2233 359999
Q ss_pred HHHHHHHHHHHcCCcEEEEecccCCCCCCchhHHHHHHHHHHHHhc--CceE-----------EEeCCCCCHHHHHHHHH
Q 022946 126 AVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDM--GMEV-----------CCTLGMLEKHQAIELKK 192 (289)
Q Consensus 126 ei~~~~~~~~~~g~~~i~i~~~~~~~~ge~~~~~~l~e~i~~ik~~--~~~i-----------~~~~g~l~~e~l~~L~~ 192 (289)
+|++.++.+.+.|+++++|+||.. + ...++++.++++.+|+. ++.+ +.+.|.++++.+++|++
T Consensus 80 ei~~~a~~~~~~G~~~i~i~gG~~-p---~~~~e~~~~~i~~ik~~~p~l~~~~~s~~ei~~~~~~~G~~~~e~l~~Lk~ 155 (350)
T PRK05927 80 EFRSLMQRYVSAGVKTVLLQGGVH-P---QLGIDYLEELVRITVKEFPSLHPHFFSAVEIAHAAQVSGISTEQALERLWD 155 (350)
T ss_pred HHHHHHHHHHHCCCCEEEEeCCCC-C---CCCHHHHHHHHHHHHHHCCCCcccCCCHHHHHHHHHhcCCCHHHHHHHHHH
Confidence 999999999999999999986543 2 24678999999999843 3432 34579999999999999
Q ss_pred cCCCeEec-CCCch-HHHHhccCCCC-CHHHHHHHHHHHHHcCCceeecEEeecCCCHHHHHHHHHHHhcCCCCCCeeee
Q 022946 193 AGLTAYNH-NLDTS-REFYSKIITTR-SYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPI 269 (289)
Q Consensus 193 aG~~~v~i-~let~-~~~~~~i~~~~-~~~~~~~~i~~~~~~Gi~v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~i 269 (289)
+|++++.+ ++|++ +++++.+++.+ +.++|+++++.+++.|+++++++|+|+|||.+|+++++..|+++| .+..+|
T Consensus 156 aGl~~l~g~~~Et~~~~~~~~~~p~k~~~~~rl~~i~~A~~lGi~~~sg~l~G~gEt~e~ri~~l~~Lr~lq--d~~~gf 233 (350)
T PRK05927 156 AGQRTIPGGGAEILSERVRKIISPKKMGPDGWIQFHKLAHRLGFRSTATMMFGHVESPEDILLHLQTLRDAQ--DENPGF 233 (350)
T ss_pred cCcccCCCCCchhCCHHHhhccCCCCCCHHHHHHHHHHHHHcCCCcCceeEEeeCCCHHHHHHHHHHHHHhh--HhhCCe
Confidence 99999998 89999 88888888866 589999999999999999999999999999999999999999996 455678
Q ss_pred ccceec----CCCCCCCC
Q 022946 270 NALLAV----KGTPLQDQ 283 (289)
Q Consensus 270 ~~~~p~----pgTpl~~~ 283 (289)
..|+|+ ++|||+..
T Consensus 234 ~~fIp~~~~~~~tpl~~~ 251 (350)
T PRK05927 234 YSFIPWSYKPGNTALGRR 251 (350)
T ss_pred eeeeecCcCCCCCccccC
Confidence 888887 78999754
No 18
>TIGR03699 mena_SCO4550 menaquinone biosynthesis protein, SCO4550 family. members of this protein family are involved in menaquinone biosynthesis by an alternate pathway via futalosine.
Probab=100.00 E-value=3.9e-32 Score=242.48 Aligned_cols=228 Identities=17% Similarity=0.201 Sum_probs=180.8
Q ss_pred CCCCHHHHHHhhCCChHHHHHHHHHHHHhhhC-CCeeEEe--EeeccccCCCCcCCCCCCCCCCCCCCCCCcCCCCHHHH
Q 022946 51 HDWSKDDIKSIYDSPVLDLLFHGAQVHRHAHN-FREVQQC--TLLSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAV 127 (289)
Q Consensus 51 ~~ls~ee~~~l~~~~~~~l~~~a~~~~r~~~~-g~~~~~~--~~i~~~t~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei 127 (289)
+++|++|++.|++....+.+..+|+..|++++ |++++++ ..+++ |++|+.+|.||++++.. +....+.+++|+|
T Consensus 1 ~~l~~~~~~~ll~~~~~~~l~~~A~~vr~~~~~g~~v~~~~~~~i~~-s~~C~~~C~fC~~~~~~--~~~~~~~ls~eei 77 (340)
T TIGR03699 1 ERLSREEALELYKEADLLALGALADEVRRRRHPGNIVTFVVDRNINY-TNICVVGCKFCAFYRAP--GHPEGYVLSVEEI 77 (340)
T ss_pred CCCCHHHHHHHccCCcHHHHHHHHHHHHHHhcCCCeEEEEeeccccc-chhhccCCccCCcccCC--CCccccCCCHHHH
Confidence 47899999999975444444444444455556 9999864 55666 99999999999976432 1122345899999
Q ss_pred HHHHHHHHHcCCcEEEEecccCCCCCCchhHHHHHHHHHHHHhcC--ceE-----------EEeCCCCCHHHHHHHHHcC
Q 022946 128 MQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMG--MEV-----------CCTLGMLEKHQAIELKKAG 194 (289)
Q Consensus 128 ~~~~~~~~~~g~~~i~i~~~~~~~~ge~~~~~~l~e~i~~ik~~~--~~i-----------~~~~g~l~~e~l~~L~~aG 194 (289)
++.++.+.+.|+++|+|+|+.. +. ...+++.++++.+++.+ +.+ +.++|.++++.+++|+++|
T Consensus 78 ~~~~~~~~~~G~~~i~l~gG~~-p~---~~~~~~~~li~~Ik~~~~~i~~~~~s~~ei~~~~~~~g~~~~e~l~~Lk~aG 153 (340)
T TIGR03699 78 LQKIEELVAYGGTQILLQGGVN-PD---LGLDYYEDLFRAIKARFPHIHIHSFSPVEIVYIAKKEGLSLREVLERLKEAG 153 (340)
T ss_pred HHHHHHHHHcCCcEEEEecCCC-CC---CCHHHHHHHHHHHHHHCCCcCCCCCCHHHHHHHhccCCCCHHHHHHHHHHcC
Confidence 9999999999999999987542 21 24566777888887443 322 2356777799999999999
Q ss_pred CCeEec-CCCch-HHHHhccCCC-CCHHHHHHHHHHHHHcCCceeecEEeecCCCHHHHHHHHHHHhcCCCCCCeeeecc
Q 022946 195 LTAYNH-NLDTS-REFYSKIITT-RSYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINA 271 (289)
Q Consensus 195 ~~~v~i-~let~-~~~~~~i~~~-~~~~~~~~~i~~~~~~Gi~v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~i~~ 271 (289)
++++.+ ++|+. +++++.+.++ .++++++++++.++++|+++++++|+|+|||.+|+.+++.+++++ +++..++..
T Consensus 154 ~~~~~~~g~E~~~~~~~~~~~~~~~s~~~~l~~i~~a~~~Gi~v~~~~iiGlgEt~ed~~~~l~~l~~l--~~~~~~~~~ 231 (340)
T TIGR03699 154 LDSIPGGGAEILSDRVRKIISPKKISSEEWLEVMETAHKLGLPTTATMMFGHVETLEDRIEHLERIREL--QDKTGGFTA 231 (340)
T ss_pred CCcCCCCcccccCHHHHHhhCCCCCCHHHHHHHHHHHHHcCCCccceeEeeCCCCHHHHHHHHHHHHHh--chhhCCeeE
Confidence 999995 79999 9999999875 589999999999999999999999999999999999999999999 467877877
Q ss_pred ceec----CCCCCCCCCCCC
Q 022946 272 LLAV----KGTPLQDQKLKY 287 (289)
Q Consensus 272 ~~p~----pgTpl~~~~~~~ 287 (289)
|+|. +||||++.++++
T Consensus 232 fIP~~f~p~~tpl~~~~~~~ 251 (340)
T TIGR03699 232 FIPWTFQPGNTELGKKRPAT 251 (340)
T ss_pred EEeecccCCCCcccCCCCCC
Confidence 7774 799999866654
No 19
>PRK08445 hypothetical protein; Provisional
Probab=100.00 E-value=4.8e-32 Score=240.81 Aligned_cols=222 Identities=14% Similarity=0.185 Sum_probs=175.9
Q ss_pred CCCCHHHHHHhhCCC-hHHHHHHHHHHHHhhhCCCeeEE---eEeeccccCCCCcCCCCCCCCCCCCCCCCCcCCCCHHH
Q 022946 51 HDWSKDDIKSIYDSP-VLDLLFHGAQVHRHAHNFREVQQ---CTLLSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDA 126 (289)
Q Consensus 51 ~~ls~ee~~~l~~~~-~~~l~~~a~~~~r~~~~g~~~~~---~~~i~~~t~~C~~~C~fC~~~~~~~~~~~~~~~~~~ee 126 (289)
+++|.+|++.|++.+ +.+|+..|..+ |++++|+.+.+ +.+|++ |++|+.+|.||++++..+.. .+| .+++|+
T Consensus 2 ~~ls~~e~l~Ll~~~~l~~L~~~A~~v-r~~~~g~~v~~~~~~~~in~-Tn~C~~~C~FCa~~~~~~~~-~~y-~l~~ee 77 (348)
T PRK08445 2 KRLSKEEALDLIKNAPLKELGEMALER-KQELHPEKITTFIVDRNINY-TNICWVDCKFCAFYRHLKED-DAY-ILSFEE 77 (348)
T ss_pred CCCCHHHHHHHhcCCCHHHHHHHHHHH-HHHHcCCcEEEEeccccccc-ccccccCCccCCCccCCCCC-CCe-eCCHHH
Confidence 589999999999654 45555555555 55556777654 566998 99999999999998654322 445 589999
Q ss_pred HHHHHHHHHHcCCcEEEEecccCCCCCCchhHHHHHHHHHHHHhcC--ceEEE----------e-CCCCCHHHHHHHHHc
Q 022946 127 VMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMG--MEVCC----------T-LGMLEKHQAIELKKA 193 (289)
Q Consensus 127 i~~~~~~~~~~g~~~i~i~~~~~~~~ge~~~~~~l~e~i~~ik~~~--~~i~~----------~-~g~l~~e~l~~L~~a 193 (289)
|++.++++.+.|.++|+++|+..+ ....+++.++++.+++.. +.+.. + .+...+|.+++|+++
T Consensus 78 I~~~~~~a~~~g~~~i~~~gg~~~----~~~~e~~~~l~~~Ik~~~p~i~~~a~s~~ei~~~a~~~~~~~~e~L~~LkeA 153 (348)
T PRK08445 78 IDKKIEELLAIGGTQILFQGGVHP----KLKIEWYENLVSHIAQKYPTITIHGFSAVEIDYIAKISKISIKEVLERLQAK 153 (348)
T ss_pred HHHHHHHHHHcCCCEEEEecCCCC----CCCHHHHHHHHHHHHHHCCCcEEEEccHHHHHHHHHHhCCCHHHHHHHHHHc
Confidence 999999999999999999875422 246788899999888543 44432 1 122348999999999
Q ss_pred CCCeEe-cCCCch-HHHHhccCC-CCCHHHHHHHHHHHHHcCCceeecEEeecCCCHHHHHHHHHHHhcCCCCCCeeee-
Q 022946 194 GLTAYN-HNLDTS-REFYSKIIT-TRSYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPI- 269 (289)
Q Consensus 194 G~~~v~-i~let~-~~~~~~i~~-~~~~~~~~~~i~~~~~~Gi~v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~i- 269 (289)
|++++. .++|++ +++++.+++ +.+.++|+++++.++++|+++++++|+|++||.+|+++++..+++++ +++.+|
T Consensus 154 Gl~~~~g~glE~~~d~v~~~~~pk~~t~~~~i~~i~~a~~~Gi~~~sg~i~G~~Et~edr~~~l~~lreLq--~~~~g~~ 231 (348)
T PRK08445 154 GLSSIPGAGAEILSDRVRDIIAPKKLDSDRWLEVHRQAHLIGMKSTATMMFGTVENDEEIIEHWERIRDLQ--DETGGFR 231 (348)
T ss_pred CCCCCCCCceeeCCHHHHHhhCCCCCCHHHHHHHHHHHHHcCCeeeeEEEecCCCCHHHHHHHHHHHHHHH--HHhCCee
Confidence 999997 689999 999999976 56899999999999999999999999999999999999999999995 555444
Q ss_pred ----ccceecCCCCCCCC
Q 022946 270 ----NALLAVKGTPLQDQ 283 (289)
Q Consensus 270 ----~~~~p~pgTpl~~~ 283 (289)
+.|.| +||||+..
T Consensus 232 ~fi~~~~~p-~~tpl~~~ 248 (348)
T PRK08445 232 AFILWSFQP-DNTPLKEE 248 (348)
T ss_pred EEeccccCC-CCCccccc
Confidence 44445 99999864
No 20
>PRK09234 fbiC FO synthase; Reviewed
Probab=100.00 E-value=7.4e-31 Score=254.03 Aligned_cols=246 Identities=18% Similarity=0.227 Sum_probs=200.8
Q ss_pred cchHHHHHHHHHhcCCCCCCCHHHHHHhhCC---ChHHHHHHHHHHHHhhhCCC-----eeEEe--EeeccccCCCCcCC
Q 022946 34 ASAAAIEAERTIREGPRHDWSKDDIKSIYDS---PVLDLLFHGAQVHRHAHNFR-----EVQQC--TLLSIKTGGCSEDC 103 (289)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~ls~ee~~~l~~~---~~~~l~~~a~~~~r~~~~g~-----~~~~~--~~i~~~t~~C~~~C 103 (289)
++.++.+.+++.. +..||.+|+..|++. ++.+|+..|..+ |++++|+ .|+++ .+|++ ||.|..+|
T Consensus 11 ~~~~~~~l~k~~~---g~~ls~eEa~~Ll~~~~~dl~~L~~~A~~v-R~~~~G~~~~~~~Vty~~n~~In~-Tn~C~~~C 85 (843)
T PRK09234 11 ASAMRRALRRARD---GVTLDVDEAAVLLTARGDDLADLCASAARV-RDAGLGAAGRPGVVTYSRKVFIPL-TRLCRDRC 85 (843)
T ss_pred HHHHHHHHHHHHc---CCCCCHHHHHHHhcCCCccHHHHHHHHHHH-HHHHcCCcccCceEEEEeEEEecC-CCCCCCCC
Confidence 4445666777777 999999999999842 344555555555 5555688 88765 57887 99999999
Q ss_pred CCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHHcCCcEEEEecccCCCCC------------CchhHHHHHHHHHHHHh-
Q 022946 104 SYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIG------------RKTNFNQILEYVKDIRD- 170 (289)
Q Consensus 104 ~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~~g~~~i~i~~~~~~~~g------------e~~~~~~l~e~i~~ik~- 170 (289)
.||+|+...+ . ..+..+++|||++.++.+.+.|++++.|++|..+... -...++++.++++.+++
T Consensus 86 ~YCaF~~~~~-~-~~~~~ls~eEIl~~a~~~~~~G~~e~l~t~G~~P~~~~~~~~~~l~~~gy~~~~ey~~~~~~~ik~~ 163 (843)
T PRK09234 86 HYCTFATVPG-K-LEAAYLSPDEVLDIARAGAAAGCKEALFTLGDRPEDRWPEAREWLDERGYDSTLDYVRAMAIRVLEE 163 (843)
T ss_pred CcCCCccCCC-C-CccccCCHHHHHHHHHHHHHCCCCEEEEecCCCCccccccccccccccccccHHHHHHHHHHHHHHh
Confidence 9999986433 2 3456699999999999999999999988876543210 01246899999999984
Q ss_pred cCceEEEeCCCCCHHHHHHHHHcCCCeEecCCCch-HHHHh------ccCCCCCHHHHHHHHHHHHHcCCceeecEEeec
Q 022946 171 MGMEVCCTLGMLEKHQAIELKKAGLTAYNHNLDTS-REFYS------KIITTRSYDERLETLKHVREAGINVCSGGIIGL 243 (289)
Q Consensus 171 ~~~~i~~~~g~l~~e~l~~L~~aG~~~v~i~let~-~~~~~------~i~~~~~~~~~~~~i~~~~~~Gi~v~~~~i~Gl 243 (289)
.++..+++.|.++.+.+..|+++|++ +.+++|+. ++.|. .+++++.+++++++++.++++|+++++++|+|+
T Consensus 164 ~gl~p~i~~G~ls~~E~~~Lk~~g~s-~gl~lEt~~~~l~~~~g~~h~~~P~K~~~~RL~ti~~A~~lGi~~tsG~L~Gi 242 (843)
T PRK09234 164 TGLLPHLNPGVMSWSELARLKPVAPS-MGMMLETTSRRLFEEKGGPHYGSPDKDPAVRLRVLEDAGRLSVPFTTGILIGI 242 (843)
T ss_pred cCCCceeeeCCCCHHHHHHHHHhcCc-CCCCHHHHHHHHHHhhcccccCCCCCCHHHHHHHHHHHHHcCCCccceEEEEC
Confidence 68878889999999999999999997 68999997 87764 456778899999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHhcCCC---CCCeeeeccceecCCCCCCCCCCCC
Q 022946 244 GEAEEDRVGLLHTLATLPT---HPESVPINALLAVKGTPLQDQKLKY 287 (289)
Q Consensus 244 get~ed~~~~l~~l~~l~~---~~~~v~i~~~~p~pgTpl~~~~~~~ 287 (289)
|||.+|+++++..|+++++ +++.+.+++|.|.|||||++.++++
T Consensus 243 GEt~edRve~L~~LR~Lq~~~g~~~evi~~~F~p~~gT~l~~~~~~s 289 (843)
T PRK09234 243 GETLAERAESLFAIRKLHREYGHIQEVIVQNFRAKPDTAMAGVPDAG 289 (843)
T ss_pred CCCHHHHHHHHHHHHHhhHhhCCCcEEeecccccCCCCCCCCCCCCC
Confidence 9999999999999999964 5788999999999999999887765
No 21
>PRK09234 fbiC FO synthase; Reviewed
Probab=99.97 E-value=5.7e-30 Score=247.90 Aligned_cols=232 Identities=19% Similarity=0.260 Sum_probs=188.1
Q ss_pred HHHHHHHHhcCCCCCCCHHHHHHhhCC--ChHHHHHHHHHHHHhhhCCCeeEE--eEeeccccCCCCcCCCCCCCCCCCC
Q 022946 38 AIEAERTIREGPRHDWSKDDIKSIYDS--PVLDLLFHGAQVHRHAHNFREVQQ--CTLLSIKTGGCSEDCSYCPQSSRYD 113 (289)
Q Consensus 38 ~~~~~~~~~~~~~~~ls~ee~~~l~~~--~~~~l~~~a~~~~r~~~~g~~~~~--~~~i~~~t~~C~~~C~fC~~~~~~~ 113 (289)
..|.+++.. +.++|.+|++.|++. +.++.+..+++..|++++|+.|++ +..|++ ||.|+.+|.||+|++. +
T Consensus 475 ~~l~~~~~~---g~~ls~~eal~Ll~~~~~~l~~L~~~Ad~iR~~~~G~~Vt~vvn~~In~-TN~C~~~C~FCafs~~-~ 549 (843)
T PRK09234 475 AALRAAERD---PAGLTDDEALALFTADGPALEAVCRLADDLRRDVVGDDVTYVVNRNINF-TNICYTGCRFCAFAQR-K 549 (843)
T ss_pred HHHHHHHhc---CCCCCHHHHHHHHcCCchhHHHHHHHHHHHHHHhcCCeEEEEEeeceec-CCCCCCCCcccccccC-C
Confidence 344555555 899999999999963 344445555555566667999985 567888 9999999999999865 3
Q ss_pred CCCCCcCCCCHHHHHHHHHHHHHcCCcEEEEecccCCCCCCchhHHHHHHHHHHHHhc--CceEEE-----------eCC
Q 022946 114 TGVKGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDM--GMEVCC-----------TLG 180 (289)
Q Consensus 114 ~~~~~~~~~~~eei~~~~~~~~~~g~~~i~i~~~~~~~~ge~~~~~~l~e~i~~ik~~--~~~i~~-----------~~g 180 (289)
.....|. +++|+|++.++++.+.|+++|+++||. ++ ....++++++++.+|+. ++.++. +.|
T Consensus 550 ~~~~~y~-Ls~eeI~~~a~ea~~~G~tev~i~gG~-~p---~~~~~~y~~lir~IK~~~p~i~i~afsp~Ei~~~a~~~G 624 (843)
T PRK09234 550 TDADAYT-LSLDEVADRAWEAWVAGATEVCMQGGI-HP---ELPGTGYADLVRAVKARVPSMHVHAFSPMEIVNGAARLG 624 (843)
T ss_pred CCCCccc-CCHHHHHHHHHHHHHCCCCEEEEecCC-CC---CcCHHHHHHHHHHHHHhCCCeeEEecChHHHHHHHHHcC
Confidence 3334444 899999999999999999999999753 33 13578899999999854 455532 357
Q ss_pred CCCHHHHHHHHHcCCCeEec-CCCch-HHHHhccCCCC-CHHHHHHHHHHHHHcCCceeecEEeecCCCHHHHHHHHHHH
Q 022946 181 MLEKHQAIELKKAGLTAYNH-NLDTS-REFYSKIITTR-SYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHTL 257 (289)
Q Consensus 181 ~l~~e~l~~L~~aG~~~v~i-~let~-~~~~~~i~~~~-~~~~~~~~i~~~~~~Gi~v~~~~i~Glget~ed~~~~l~~l 257 (289)
....|.+.+|+++|++++.. +-|.+ +++++.+++++ +.++|+++++.+++.|+++++++|+|++||.+|+++++.+|
T Consensus 625 l~~~e~l~~LkeAGLds~pgt~aeil~d~vr~~i~p~k~~~~~wle~i~~Ah~lGi~~~stmm~G~~Et~edrv~hl~~L 704 (843)
T PRK09234 625 LSIREWLTALREAGLDTIPGTAAEILDDEVRWVLTKGKLPTAEWIEVVTTAHEVGLRSSSTMMYGHVDTPRHWVAHLRVL 704 (843)
T ss_pred CCHHHHHHHHHHhCcCccCCCchhhCCHHHHhhcCCCCCCHHHHHHHHHHHHHcCCCcccceEEcCCCCHHHHHHHHHHH
Confidence 88899999999999999987 55666 88888888854 78999999999999999999999999999999999999999
Q ss_pred hcCCCCCCeeeecccee----cCCCCCC
Q 022946 258 ATLPTHPESVPINALLA----VKGTPLQ 281 (289)
Q Consensus 258 ~~l~~~~~~v~i~~~~p----~pgTpl~ 281 (289)
+++| .+..+|..|+| .|+||++
T Consensus 705 reLq--~~tgGf~~fIPl~F~~~~tpl~ 730 (843)
T PRK09234 705 RDIQ--DRTGGFTEFVPLPFVHQNAPLY 730 (843)
T ss_pred HhcC--cccCCeeeeeeccccCCCCCcc
Confidence 9995 68888999999 7788885
No 22
>PRK06267 hypothetical protein; Provisional
Probab=99.97 E-value=7.9e-29 Score=220.96 Aligned_cols=209 Identities=18% Similarity=0.232 Sum_probs=168.0
Q ss_pred hHHHHHHHHHHHHhhhCCCeeEEeEeeccccCCCC--cCCCCCCCCCCCCC-CCCCcCCCCHHHHHHHHHHHHHcCCcEE
Q 022946 66 VLDLLFHGAQVHRHAHNFREVQQCTLLSIKTGGCS--EDCSYCPQSSRYDT-GVKGQKLMTKDAVMQAAQKAKEAGSTRF 142 (289)
Q Consensus 66 ~~~l~~~a~~~~r~~~~g~~~~~~~~i~~~t~~C~--~~C~fC~~~~~~~~-~~~~~~~~~~eei~~~~~~~~~~g~~~i 142 (289)
+.+|...|..+ |.+++|+++++++++++ |++|+ .+|.||+++...+. ....++.+++|+|+++++.+.+.|++.+
T Consensus 6 ~~~L~~~A~~i-r~~~fG~~v~l~~~l~~-S~~C~l~~~C~FC~~s~~~~~i~~~~~~~~s~eeI~eea~~~~~~Gv~~~ 83 (350)
T PRK06267 6 ILENSIKAFKL-TEKHHGNIVSLERALFL-GWYCNLKGPCKFCYMSTQKDKIKDPLKARRRVESILAEAILMKRIGWKLE 83 (350)
T ss_pred HHHHHHHHHHH-HHHHcCCeEEEEEeeee-cCCCcCCCCCcCCCCcccCCccCccccccCCHHHHHHHHHHHHHcCCCEE
Confidence 44555555555 55556999999999997 99999 89999999864321 1123455899999999999999999877
Q ss_pred EEecccCCCCCCchhHHHHHHHHHHHHhc-CceEEEeCCCCCHHHHHHHHHcCCCeEecCCCch-HHHHhccCCCCCHHH
Q 022946 143 CMGAAWRDTIGRKTNFNQILEYVKDIRDM-GMEVCCTLGMLEKHQAIELKKAGLTAYNHNLDTS-REFYSKIITTRSYDE 220 (289)
Q Consensus 143 ~i~~~~~~~~ge~~~~~~l~e~i~~ik~~-~~~i~~~~g~l~~e~l~~L~~aG~~~v~i~let~-~~~~~~i~~~~~~~~ 220 (289)
.++||. . ...+++.++++.++.. +..++.+.|.++.+.+..++.+|+ .+++||. +++++.+++++++++
T Consensus 84 ~lsgG~-~-----~~~~el~~i~e~I~~~~~~~~~~s~G~~d~~~~~~~~l~Gv---~g~~ET~~~~~~~~i~~~~s~ed 154 (350)
T PRK06267 84 FISGGY-G-----YTTEEINDIAEMIAYIQGCKQYLNVGIIDFLNINLNEIEGV---VGAVETVNPKLHREICPGKPLDK 154 (350)
T ss_pred EEecCC-C-----CCHHHHHHHHHHHHHhhCCceEeecccCCHHHHhhccccCc---eeeeecCCHHHHHhhCCCCCHHH
Confidence 666543 2 2234455555555432 344667788888888777777775 5689999 999999999999999
Q ss_pred HHHHHHHHHHcCCceeecEEeecCCCHHHHHHHHHHHhcCCCCCCeeeeccceecCCCCCCCCCCCC
Q 022946 221 RLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQKLKY 287 (289)
Q Consensus 221 ~~~~i~~~~~~Gi~v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~i~~~~p~pgTpl~~~~~~~ 287 (289)
++++++.++++|+.+++++|+|+||+.+|+.+++++++++ +++.+.++.|+|.||||+++.++++
T Consensus 155 ~~~~l~~ak~aGi~v~~g~IiGlgEt~ed~~~~l~~l~~l--~~d~v~~~~L~P~pGTp~~~~~~~s 219 (350)
T PRK06267 155 IKEMLLKAKDLGLKTGITIILGLGETEDDIEKLLNLIEEL--DLDRITFYSLNPQKGTIFENKPSVT 219 (350)
T ss_pred HHHHHHHHHHcCCeeeeeEEEeCCCCHHHHHHHHHHHHHc--CCCEEEEEeeeECCCCcCCCCCCCC
Confidence 9999999999999999999999999999999999999999 6899999999999999999987665
No 23
>COG1060 ThiH Thiamine biosynthesis enzyme ThiH and related uncharacterized enzymes [Coenzyme metabolism / General function prediction only]
Probab=99.96 E-value=3.1e-28 Score=215.94 Aligned_cols=239 Identities=16% Similarity=0.195 Sum_probs=179.0
Q ss_pred HHHHHHHHHhcCCCCCCCHHHHHHhhCCChH-HHHHHHHHHHHhhhCCCeeE--EeEeeccccCCCCcCCCCCCCCCCCC
Q 022946 37 AAIEAERTIREGPRHDWSKDDIKSIYDSPVL-DLLFHGAQVHRHAHNFREVQ--QCTLLSIKTGGCSEDCSYCPQSSRYD 113 (289)
Q Consensus 37 ~~~~~~~~~~~~~~~~ls~ee~~~l~~~~~~-~l~~~a~~~~r~~~~g~~~~--~~~~i~~~t~~C~~~C~fC~~~~~~~ 113 (289)
.+.+.+++.. +.+++.+|++.|++.... .+...|...++....++.++ ++..|++ ||.|..+|.||+|....
T Consensus 8 ~~~~~e~a~~---~~~l~~~d~~~Ll~~~~~~~l~~~A~~~r~~~~~~~~vtyv~n~~in~-TN~C~~~C~fCaF~~~~- 82 (370)
T COG1060 8 VDEIVEKALN---GERLTREDALALLSPADLEELEELADKARRRKRVGDGVTYVVNRNINY-TNICVNDCTFCAFYRKP- 82 (370)
T ss_pred HHHHHHHHhc---cCCCCHHHHHHHhccCcHHHHHHHHHHHHHhhccCCcEEEEEeecCCc-chhhcCCCCccccccCC-
Confidence 4556666666 999999999999986544 44455555543555566655 5678888 99999999999998644
Q ss_pred CCCCCcCCCCHHHHHHHHHHHHHcCCcEEEEecccCCCCCCchhHHHHHHHHHHHHhcCceE------------EEeC-C
Q 022946 114 TGVKGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMGMEV------------CCTL-G 180 (289)
Q Consensus 114 ~~~~~~~~~~~eei~~~~~~~~~~g~~~i~i~~~~~~~~ge~~~~~~l~e~i~~ik~~~~~i------------~~~~-g 180 (289)
+......+++|||.++++++.+.|+++++|+||..+. ..++++.++++.+|+....+ .... +
T Consensus 83 -~~~~~y~Ls~eeI~~~~~~~~~~G~~Evli~gG~~p~----~~~~y~~~~~~~ik~~~p~~~i~a~s~~ei~~~~~~~~ 157 (370)
T COG1060 83 -GDPKAYTLSPEEILEEVREAVKRGITEVLIVGGEHPE----LSLEYYEELFRTIKEEFPDLHIHALSAGEILFLAREGG 157 (370)
T ss_pred -CCccccccCHHHHHHHHHHHHHcCCeEEEEecCcCCC----cchHHHHHHHHHHHHhCcchhhcccCHHHhHHHHhccC
Confidence 2223455999999999999999999999999875432 24457777777777421111 1222 3
Q ss_pred CCCHHHHHHHHHcCCCeEecCCCch--HHHHhccCC-CCCHHHHHHHHHHHHHcCCceeecEEeecCCCHHHHHHHHHHH
Q 022946 181 MLEKHQAIELKKAGLTAYNHNLDTS--REFYSKIIT-TRSYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHTL 257 (289)
Q Consensus 181 ~l~~e~l~~L~~aG~~~v~i~let~--~~~~~~i~~-~~~~~~~~~~i~~~~~~Gi~v~~~~i~Glget~ed~~~~l~~l 257 (289)
....|.+++|+++|++.+..+-... +++.+.+++ +.+++.|++.++.++++||+.++++++|.+|+.+|+.+++..+
T Consensus 158 ~s~~E~l~~Lk~aGldsmpg~~aeil~e~vr~~~~p~K~~~~~wle~~~~Ah~lGI~~tatml~Gh~E~~ed~~~hl~~i 237 (370)
T COG1060 158 LSYEEVLKRLKEAGLDSMPGGGAEILSEEVRKIHCPPKKSPEEWLEIHERAHRLGIPTTATMLLGHVETREDRIDHLEHI 237 (370)
T ss_pred CCHHHHHHHHHHcCCCcCcCcceeechHHHHHhhCCCCCCHHHHHHHHHHHHHcCCCccceeEEEecCCHHHHHHHHHHH
Confidence 4566679999999999999876665 556666665 4589999999999999999999999999999999999999999
Q ss_pred hcCCC---CCCeeeeccceecCCC-CCCCCCC
Q 022946 258 ATLPT---HPESVPINALLAVKGT-PLQDQKL 285 (289)
Q Consensus 258 ~~l~~---~~~~v~i~~~~p~pgT-pl~~~~~ 285 (289)
+++|+ +...+.+..|.|.+++ ++...++
T Consensus 238 r~lQ~~~gg~~~fI~~~f~p~~~~~~~~~~~~ 269 (370)
T COG1060 238 RDLQDETGGFQEFIPLRFRPENGPLPAEVVPE 269 (370)
T ss_pred HHHHHHhCCcEEEEcccccCCCCCccccCCCC
Confidence 99875 4455556666676666 5554443
No 24
>TIGR03550 F420_cofG 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, CofG subunit. This model represents either a subunit or a domain, depending on whether or not the genes are fused, of a bifunctional protein that completes the synthesis of 7,8-didemethyl-8-hydroxy-5-deazariboflavin, or FO. FO is the chromophore of coenzyme F(420), involved in methanogenesis in methanogenic archaea but found in certain other lineages as well. The chromophore also occurs as a cofactor in DNA photolyases in Cyanobacteria.
Probab=99.96 E-value=2.2e-28 Score=216.19 Aligned_cols=197 Identities=20% Similarity=0.306 Sum_probs=159.0
Q ss_pred EeEeeccccCCCCcCCCCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHHcCCcEEEEecccCCCCC------------Cc
Q 022946 88 QCTLLSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIG------------RK 155 (289)
Q Consensus 88 ~~~~i~~~t~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~~g~~~i~i~~~~~~~~g------------e~ 155 (289)
.+..|++ ||+|+.+|.||+++... +...++.+++|+|+++++.+.+.|++++++++|..+... -.
T Consensus 4 ~n~~i~~-tn~C~~~C~fCaf~~~~--g~~~~~~l~~eeI~~~a~~~~~~G~~ei~l~~G~~p~~~~~~~~~~l~~~~~~ 80 (322)
T TIGR03550 4 RNVFIPL-TRLCRNRCGYCTFRRPP--GELEAALLSPEEVLEILRKGAAAGCTEALFTFGEKPEERYPEAREWLAEMGYD 80 (322)
T ss_pred ceEEecc-ccCcCCCCccCCccccC--CCcccccCCHHHHHHHHHHHHHCCCCEEEEecCCCccccHHHHHHHHHhcCCc
Confidence 3456787 99999999999998643 333455699999999999999999999998875432211 00
Q ss_pred hhHHHHHHHHHHHHh-cCceEEEeCCCCCHHHHHHHHHcCCCeEecCCCch-HHHHhcc----CCCCCHHHHHHHHHHHH
Q 022946 156 TNFNQILEYVKDIRD-MGMEVCCTLGMLEKHQAIELKKAGLTAYNHNLDTS-REFYSKI----ITTRSYDERLETLKHVR 229 (289)
Q Consensus 156 ~~~~~l~e~i~~ik~-~~~~i~~~~g~l~~e~l~~L~~aG~~~v~i~let~-~~~~~~i----~~~~~~~~~~~~i~~~~ 229 (289)
...+++.++++.+++ .++..+.+.|.++++.++.|+++|++ +.+++|++ +.+++.+ ++++++++++++++.++
T Consensus 81 ~~~~~~~~~~~~i~~e~~~~~~~~~g~lt~e~l~~Lk~aG~~-~~~~~Et~~~~l~~~~~~~~~p~k~~~~~l~~i~~a~ 159 (322)
T TIGR03550 81 STLEYLRELCELALEETGLLPHTNPGVMSRDELARLKPVNAS-MGLMLETTSERLCKGEAHYGSPGKDPAVRLETIEDAG 159 (322)
T ss_pred cHHHHHHHHHHHHHHhcCCccccCCCCCCHHHHHHHHhhCCC-CCcchhhhccccccccccCCCCCCCHHHHHHHHHHHH
Confidence 013677778887773 36666788899999999999999986 58899998 7755444 45567899999999999
Q ss_pred HcCCceeecEEeecCCCHHHHHHHHHHHhcCCC---CCCeeeeccceecCCCCCCCCCCCCC
Q 022946 230 EAGINVCSGGIIGLGEAEEDRVGLLHTLATLPT---HPESVPINALLAVKGTPLQDQKLKYG 288 (289)
Q Consensus 230 ~~Gi~v~~~~i~Glget~ed~~~~l~~l~~l~~---~~~~v~i~~~~p~pgTpl~~~~~~~~ 288 (289)
+.|+++++++|+|+|||++|+.+++..+++++. ++..+.+++|.|.|||||++.++++.
T Consensus 160 ~~Gi~~~s~~i~G~gEt~ed~~~~l~~lr~Lq~~~~g~~~~i~~~f~P~~gTpl~~~~~~s~ 221 (322)
T TIGR03550 160 RLKIPFTTGILIGIGETREERAESLLAIRELHERYGHIQEVIVQNFRAKPGTPMENHPEPSL 221 (322)
T ss_pred HcCCCccceeeEeCCCCHHHHHHHHHHHHHHHHHcCCCeEEecCccccCCCCCccCCCCCCH
Confidence 999999999999999999999999999999853 25678889999999999998776653
No 25
>TIGR00423 radical SAM domain protein, CofH subfamily. This protein family includes the CofH protein of coenzyme F(420) biosynthesis from Methanocaldococcus jannaschii, but appears to hit genomes more broadly than just the subset that make coenzyme F(420), so that narrower group is being built as a separate family.
Probab=99.96 E-value=8.1e-28 Score=211.71 Aligned_cols=187 Identities=20% Similarity=0.341 Sum_probs=154.4
Q ss_pred EeEeeccccCCCCcCCCCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHHcCCcEEEEecccCCCCCCchhHHHHHHHHHH
Q 022946 88 QCTLLSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKD 167 (289)
Q Consensus 88 ~~~~i~~~t~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~~g~~~i~i~~~~~~~~ge~~~~~~l~e~i~~ 167 (289)
.+..|++ |++|+.+|.||+++..+.. .+.+.+++|+|+++++.+.+.|+++|+|+|+.. +. ...+++.++++.
T Consensus 5 ~n~~i~~-T~~C~~~C~FC~~~~~~~~--~~~~~ls~eeI~~~~~~~~~~G~~~i~l~gg~~-~~---~~~~~~~~i~~~ 77 (309)
T TIGR00423 5 VNRNINF-TNICVGKCKFCAFRAREKD--KDAYVLSLEEILEKVKEAVAKGATEVCIQGGLN-PQ---LDIEYYEELFRA 77 (309)
T ss_pred ceeeecC-ccccccCCccCCCccCCCC--CCcccCCHHHHHHHHHHHHHCCCCEEEEecCCC-CC---CCHHHHHHHHHH
Confidence 4566787 9999999999999864432 233458999999999999999999999996542 21 346778888888
Q ss_pred HHhc--CceEE-----------EeCCCCCHHHHHHHHHcCCCeEe-cCCCch-HHHHhccCCCC-CHHHHHHHHHHHHHc
Q 022946 168 IRDM--GMEVC-----------CTLGMLEKHQAIELKKAGLTAYN-HNLDTS-REFYSKIITTR-SYDERLETLKHVREA 231 (289)
Q Consensus 168 ik~~--~~~i~-----------~~~g~l~~e~l~~L~~aG~~~v~-i~let~-~~~~~~i~~~~-~~~~~~~~i~~~~~~ 231 (289)
+++. .+.+. .+.|.++++.+++|++||++++. +++|+. +++++.+++++ +.++++++++.++++
T Consensus 78 Ik~~~~~i~~~~~s~~e~~~~~~~~g~~~~e~l~~LkeAGl~~i~~~g~E~l~~~~~~~i~~~~~t~~~~l~~i~~a~~~ 157 (309)
T TIGR00423 78 IKQEFPDVHIHAFSPMEVYFLAKNEGLSIEEVLKRLKKAGLDSMPGTGAEILDDSVRRKICPNKLSSDEWLEVIKTAHRL 157 (309)
T ss_pred HHHHCCCceEEecCHHHHHHHHHHcCCCHHHHHHHHHHcCCCcCCCCcchhcCHHHHHhhCCCCCCHHHHHHHHHHHHHc
Confidence 8854 34432 13566789999999999999997 599999 99999998755 899999999999999
Q ss_pred CCceeecEEeecCCCHHHHHHHHHHHhcCCCCCCeeeeccceec----CCCC-CCCC
Q 022946 232 GINVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLAV----KGTP-LQDQ 283 (289)
Q Consensus 232 Gi~v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~i~~~~p~----pgTp-l~~~ 283 (289)
|+++++++|+|++||.+|+.+++..++++ +++..+|..|+|. ++|| |+..
T Consensus 158 Gi~~~s~~iiG~~Et~ed~~~~l~~lr~l--~~~~~~f~~fiP~~f~~~~t~~l~~~ 212 (309)
T TIGR00423 158 GIPTTATMMFGHVENPEHRVEHLLRIRKI--QEKTGGFTEFIPLPFQPENNPYLEGE 212 (309)
T ss_pred CCCceeeEEecCCCCHHHHHHHHHHHHhh--chhhCCeeeEEeeeecCCCChhhccC
Confidence 99999999999999999999999999999 4688888888884 5888 7654
No 26
>PRK05481 lipoyl synthase; Provisional
Probab=99.95 E-value=8.2e-26 Score=196.22 Aligned_cols=209 Identities=19% Similarity=0.296 Sum_probs=164.7
Q ss_pred CCHHHHHHhhCC-ChHHHHHHHHHHHHh-hhCCCeeEEeEeeccccCCCCcCCCCCCCCCCCCCCCCCcCCCCHHHHHHH
Q 022946 53 WSKDDIKSIYDS-PVLDLLFHGAQVHRH-AHNFREVQQCTLLSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQA 130 (289)
Q Consensus 53 ls~ee~~~l~~~-~~~~l~~~a~~~~r~-~~~g~~~~~~~~i~~~t~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~ 130 (289)
-+..|++.|+.. ++..+...|...++. .+.++.+++ +.+ |+||+.+|.||.++... .+.+++++|+++
T Consensus 19 ~~~~~~~~l~~~~~l~~~~~~a~~~~~~~~~~~~~~~f---i~i-s~GC~~~C~FC~i~~~r------~~s~~~eeI~~e 88 (289)
T PRK05481 19 EEYTEIKKLLRELGLHTVCEEASCPNIGECWSRGTATF---MIL-GDICTRRCPFCDVATGR------PLPLDPDEPERV 88 (289)
T ss_pred hhHHHHHHHHHhCChHHHHHhhCCCcchhccCCCeEEE---EEe-cccccCCCCCceeCCCC------CCCCCHHHHHHH
Confidence 356788888875 455666666555441 445666543 345 99999999999988521 133799999999
Q ss_pred HHHHHHcCCcEEEEecccCCCCCCchhHHHHHHHHHHHHhc--Cce--EEEeCCCCCHHHHHHHHHcCCCeEecCCCchH
Q 022946 131 AQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDM--GME--VCCTLGMLEKHQAIELKKAGLTAYNHNLDTSR 206 (289)
Q Consensus 131 ~~~~~~~g~~~i~i~~~~~~~~ge~~~~~~l~e~i~~ik~~--~~~--i~~~~g~l~~e~l~~L~~aG~~~v~i~let~~ 206 (289)
++.+.+.|+++|+|+|+..+... ....+.+.++++.+++. ++. +.........+.+..|+++|.+.+.+.+|+.+
T Consensus 89 a~~l~~~G~kEI~L~gg~~~d~~-~~~~~~l~~Ll~~I~~~~p~irI~~l~~~~~~~~e~L~~l~~ag~~i~~~~~ets~ 167 (289)
T PRK05481 89 AEAVARMGLKYVVITSVDRDDLP-DGGAQHFAETIRAIRELNPGTTIEVLIPDFRGRMDALLTVLDARPDVFNHNLETVP 167 (289)
T ss_pred HHHHHHCCCCEEEEEEeeCCCcc-cccHHHHHHHHHHHHhhCCCcEEEEEccCCCCCHHHHHHHHhcCcceeeccccChH
Confidence 99999999999999987543211 11235677777777742 333 33333334568899999999999999999998
Q ss_pred HHHhccCCCCCHHHHHHHHHHHHHc--CCceeecEEeecCCCHHHHHHHHHHHhcCCCCCCeeeecccee
Q 022946 207 EFYSKIITTRSYDERLETLKHVREA--GINVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLA 274 (289)
Q Consensus 207 ~~~~~i~~~~~~~~~~~~i~~~~~~--Gi~v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~i~~~~p 274 (289)
++++.++++.+++++++.++.+++. |+.+++++|+|+|||++|+.+++++++++ +++.+.++.|.|
T Consensus 168 ~vlk~m~r~~t~e~~le~i~~ar~~~pgi~~~t~~IvGfGET~ed~~~tl~~lrel--~~d~v~if~Ys~ 235 (289)
T PRK05481 168 RLYKRVRPGADYERSLELLKRAKELHPGIPTKSGLMVGLGETDEEVLEVMDDLRAA--GVDILTIGQYLQ 235 (289)
T ss_pred HHHHHhCCCCCHHHHHHHHHHHHHhCCCCeEeeeeEEECCCCHHHHHHHHHHHHhc--CCCEEEEEccCC
Confidence 8999999999999999999999999 99999999999999999999999999999 689999999999
No 27
>PRK06245 cofG FO synthase subunit 1; Reviewed
Probab=99.94 E-value=8.9e-26 Score=201.28 Aligned_cols=198 Identities=22% Similarity=0.360 Sum_probs=155.4
Q ss_pred CCeeEE--eEeeccccCCCCcCCCCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHHcCCcEEEEecccCCCCCCchh---
Q 022946 83 FREVQQ--CTLLSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTN--- 157 (289)
Q Consensus 83 g~~~~~--~~~i~~~t~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~~g~~~i~i~~~~~~~~ge~~~--- 157 (289)
|+.+++ +..+++ ||+|+.+|.||+++...+ ....+++|+|+++++.+.+.|+++++|+||..+... ...
T Consensus 5 ~~~vt~~~~~~i~~-Tn~C~~~C~fC~~~~~~~----~~~~ls~eei~~~~~~~~~~G~~ei~l~gG~~p~~~-~~~~~~ 78 (336)
T PRK06245 5 SKIVTYSRNVFIPL-TYECRNRCGYCTFRRDPG----QPSLLSPEEVKEILRRGADAGCTEALFTFGEVPDES-YERIKE 78 (336)
T ss_pred CCeeEeecceeeec-cccccCCCccCCCcCCCC----ccCcCCHHHHHHHHHHHHHCCCCEEEEecCCCCccc-hhhhhh
Confidence 666665 467788 999999999999875322 223689999999999999999999999886542221 001
Q ss_pred ------HHHHHHHHHHHH----hcCceEEEeCCCCCHHHHHHHHHcCCCeEecCCCch-HHHHhcc---CCCCCHHHHHH
Q 022946 158 ------FNQILEYVKDIR----DMGMEVCCTLGMLEKHQAIELKKAGLTAYNHNLDTS-REFYSKI---ITTRSYDERLE 223 (289)
Q Consensus 158 ------~~~l~e~i~~ik----~~~~~i~~~~g~l~~e~l~~L~~aG~~~v~i~let~-~~~~~~i---~~~~~~~~~~~ 223 (289)
+..+.+.++.+. +.++...++.+.++++.++.|+++|+. +.+++|++ +.+++.+ +++++++++++
T Consensus 79 ~~~~~g~~~~~~~i~~i~~~~~~~g~~~~~~~~~lt~e~i~~Lk~ag~~-l~~~~et~~e~l~~~v~~~~~~~~~~~~l~ 157 (336)
T PRK06245 79 QLAEMGYSSILEYLYDLCELALEEGLLPHTNAGILTREEMEKLKEVNAS-MGLMLEQTSPRLLNTVHRGSPGKDPELRLE 157 (336)
T ss_pred hhhhhhHHHHHHHHHHHHHHHhhcCCCccccCCCCCHHHHHHHHHhCCC-CCCCccccchhhHHhhccCCCCCCHHHHHH
Confidence 234455554433 334555677889999999999999864 57788998 7787544 56778999999
Q ss_pred HHHHHHHcCCceeecEEeecCCCHHHHHHHHHHHhcCCC---CCCeeeeccceecCCCCCCCCCCCC
Q 022946 224 TLKHVREAGINVCSGGIIGLGEAEEDRVGLLHTLATLPT---HPESVPINALLAVKGTPLQDQKLKY 287 (289)
Q Consensus 224 ~i~~~~~~Gi~v~~~~i~Glget~ed~~~~l~~l~~l~~---~~~~v~i~~~~p~pgTpl~~~~~~~ 287 (289)
+++.+++.|+.+++++|+|+|||.+|+.+++..+++++. ++..+.+++|+|.||||+...+.++
T Consensus 158 ~i~~a~~~Gi~~~~~~i~G~gEt~ed~~~~l~~l~~l~~~~gg~~~~~~~~f~P~~~T~~~~~~~~s 224 (336)
T PRK06245 158 TIENAGKLKIPFTTGILIGIGETWEDRAESLEAIAELHERYGHIQEVIIQNFSPKPGIPMENHPEPS 224 (336)
T ss_pred HHHHHHHcCCceeeeeeeECCCCHHHHHHHHHHHHHHHHhhCCCcEEecCCCcCCCCCCcccCCCcC
Confidence 999999999999999999999999999999999998853 3578899999999999997765543
No 28
>PRK12928 lipoyl synthase; Provisional
Probab=99.94 E-value=1.4e-25 Score=194.25 Aligned_cols=216 Identities=18% Similarity=0.290 Sum_probs=168.0
Q ss_pred HHHHHHhhCC-ChHHHHHHHHHHHHhhhC-CCeeEEeEeeccccCCCCcCCCCCCCCCCCCCCCCCcCCCCHHHHHHHHH
Q 022946 55 KDDIKSIYDS-PVLDLLFHGAQVHRHAHN-FREVQQCTLLSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQ 132 (289)
Q Consensus 55 ~ee~~~l~~~-~~~~l~~~a~~~~r~~~~-g~~~~~~~~i~~~t~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~ 132 (289)
..++..|+.. ++..+...|.......+. ++.+++ +.+ |++|+.+|.||.++.. . ...++++++++.++
T Consensus 28 ~~~~~~l~~~~~l~tv~~~A~~~~~~~~~~~~~~tf---v~i-s~gC~~~C~FCa~~~g-----~-~~~~~~eei~~~a~ 97 (290)
T PRK12928 28 LETVQRLVKQRRLHTICEEARCPNRGECYAQGTATF---LIM-GSICTRRCAFCQVDKG-----R-PMPLDPDEPERVAE 97 (290)
T ss_pred HHHHHHHHHcCCHHHHHHHhCCCcccccCCCCEEEE---EEe-cccccCcCCCCCccCC-----C-CCCCCHHHHHHHHH
Confidence 5667778865 566777777666555433 555544 344 9999999999999851 1 23479999999999
Q ss_pred HHHHcCCcEEEEecccCCCCCCchhHHHHHHHHHHHHhc--CceEEE-eCCCC--CHHHHHHHHHcCCCeEecCCCchHH
Q 022946 133 KAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDM--GMEVCC-TLGML--EKHQAIELKKAGLTAYNHNLDTSRE 207 (289)
Q Consensus 133 ~~~~~g~~~i~i~~~~~~~~ge~~~~~~l~e~i~~ik~~--~~~i~~-~~g~l--~~e~l~~L~~aG~~~v~i~let~~~ 207 (289)
.+.+.|+++++|+|+..+... +...+.+.++++.+++. .+.+.. +...+ ..+.+..|+++|.+.+.+++|+.++
T Consensus 98 ~~~~~G~keivitg~~~dDl~-d~g~~~~~ell~~Ik~~~p~~~I~~ltp~~~~~~~e~L~~l~~Ag~~i~~hnlEt~~~ 176 (290)
T PRK12928 98 AVAALGLRYVVLTSVARDDLP-DGGAAHFVATIAAIRARNPGTGIEVLTPDFWGGQRERLATVLAAKPDVFNHNLETVPR 176 (290)
T ss_pred HHHHCCCCEEEEEEEeCCccc-ccCHHHHHHHHHHHHhcCCCCEEEEeccccccCCHHHHHHHHHcCchhhcccCcCcHH
Confidence 999999999999886543321 12345677777777743 233322 33333 5788999999999999999998899
Q ss_pred HHhccCCCCCHHHHHHHHHHHHHcC--CceeecEEeecCCCHHHHHHHHHHHhcCCCCCCeeeecccee--cCCCCCCCC
Q 022946 208 FYSKIITTRSYDERLETLKHVREAG--INVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLA--VKGTPLQDQ 283 (289)
Q Consensus 208 ~~~~i~~~~~~~~~~~~i~~~~~~G--i~v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~i~~~~p--~pgTpl~~~ 283 (289)
+++.++++.+++++++.++.+++.| +.+++++|+|+|||.+|+.+++++++++ +++.++++.|.+ ..+.|....
T Consensus 177 vl~~m~r~~t~e~~le~l~~ak~~gp~i~~~s~iIvG~GET~ed~~etl~~Lrel--~~d~v~i~~Yl~p~~~~~~v~~~ 254 (290)
T PRK12928 177 LQKAVRRGADYQRSLDLLARAKELAPDIPTKSGLMLGLGETEDEVIETLRDLRAV--GCDRLTIGQYLRPSLAHLPVQRY 254 (290)
T ss_pred HHHHhCCCCCHHHHHHHHHHHHHhCCCceecccEEEeCCCCHHHHHHHHHHHHhc--CCCEEEEEcCCCCCccCCceeec
Confidence 9999999999999999999999999 9999999999999999999999999999 689999999876 455665554
No 29
>TIGR03471 HpnJ hopanoid biosynthesis associated radical SAM protein HpnJ. One of the well-described hopanoid intermediates is bacteriohopanetetrol. In the conversion from hopene several reactions must occur in the side chain for which a radical mechanism might be reasonable. These include the four (presumably anaerobic) hydroxylations and a methyl shift.
Probab=99.94 E-value=1.9e-25 Score=207.67 Aligned_cols=184 Identities=17% Similarity=0.277 Sum_probs=150.9
Q ss_pred eeccccCCCCcCCCCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHHc--CCcEEEEecccCCCCCCchhHHHHHHHHHHH
Q 022946 91 LLSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEA--GSTRFCMGAAWRDTIGRKTNFNQILEYVKDI 168 (289)
Q Consensus 91 ~i~~~t~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~~--g~~~i~i~~~~~~~~ge~~~~~~l~e~i~~i 168 (289)
.+.. ++|||++|.||..+.... ...++.+++|.|+++++.+.+. |++.|.|.++. +.. ..+++.++++.+
T Consensus 199 ~i~t-sRGCp~~C~FC~~~~~~~--g~~~r~rs~e~V~~Ei~~~~~~~~~~~~i~f~Dd~--f~~---~~~~~~~l~~~l 270 (472)
T TIGR03471 199 SLYT-GRGCPSKCTFCLWPQTVG--GHRYRTRSAESVIEEVKYALENFPEVREFFFDDDT--FTD---DKPRAEEIARKL 270 (472)
T ss_pred EEEe-cCCCCCCCCCCCCCccCC--CCceEeCCHHHHHHHHHHHHHhcCCCcEEEEeCCC--CCC---CHHHHHHHHHHH
Confidence 3555 999999999998764221 1345567999999999988764 78888886532 222 234566666666
Q ss_pred HhcCceEEEe-CCCCCHHHHHHHHHcCCCeEecCCCch-HHHHhccCCCCCHHHHHHHHHHHHHcCCceeecEEeec-CC
Q 022946 169 RDMGMEVCCT-LGMLEKHQAIELKKAGLTAYNHNLDTS-REFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGL-GE 245 (289)
Q Consensus 169 k~~~~~i~~~-~g~l~~e~l~~L~~aG~~~v~i~let~-~~~~~~i~~~~~~~~~~~~i~~~~~~Gi~v~~~~i~Gl-ge 245 (289)
++.++.+.+. ...++++.++.|+++|+.++.+|+||. +++++.++++.+.+++.++++.++++|+.+..++|+|+ ||
T Consensus 271 ~~~~i~~~~~~~~~~~~e~l~~l~~aG~~~v~iGiES~s~~~L~~~~K~~~~~~~~~~i~~~~~~Gi~v~~~~IiGlPge 350 (472)
T TIGR03471 271 GPLGVTWSCNARANVDYETLKVMKENGLRLLLVGYESGDQQILKNIKKGLTVEIARRFTRDCHKLGIKVHGTFILGLPGE 350 (472)
T ss_pred hhcCceEEEEecCCCCHHHHHHHHHcCCCEEEEcCCCCCHHHHHHhcCCCCHHHHHHHHHHHHHCCCeEEEEEEEeCCCC
Confidence 6556654332 234799999999999999999999999 99999999999999999999999999999999999999 99
Q ss_pred CHHHHHHHHHHHhcCCCCCCeeeeccceecCCCCCCCCC
Q 022946 246 AEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQK 284 (289)
Q Consensus 246 t~ed~~~~l~~l~~l~~~~~~v~i~~~~p~pgTpl~~~~ 284 (289)
|.+++.++++++.++ +++.+.++.+.|+|||||++..
T Consensus 351 t~e~~~~ti~~~~~l--~~~~~~~~~l~P~PGT~l~~~~ 387 (472)
T TIGR03471 351 TRETIRKTIDFAKEL--NPHTIQVSLAAPYPGTELYDQA 387 (472)
T ss_pred CHHHHHHHHHHHHhc--CCCceeeeecccCCCcHHHHHH
Confidence 999999999999999 6889999999999999998643
No 30
>TIGR01579 MiaB-like-C MiaB-like tRNA modifying enzyme. This clade is a member of a subfamily (TIGR00089) and spans low GC Gram positive bacteria, alpha and epsilon proteobacteria, Campylobacter, Porphyromonas, Aquifex, Thermotoga, Chlamydia, Treponema and Fusobacterium.
Probab=99.94 E-value=2.3e-25 Score=203.92 Aligned_cols=191 Identities=16% Similarity=0.254 Sum_probs=155.1
Q ss_pred EeeccccCCCCcCCCCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHHcCCcEEEEecccCCCCCCch-hHHHHHHHHHHH
Q 022946 90 TLLSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKT-NFNQILEYVKDI 168 (289)
Q Consensus 90 ~~i~~~t~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~~g~~~i~i~~~~~~~~ge~~-~~~~l~e~i~~i 168 (289)
..|.+ ++|||++|+||..+..++ +.+.+++++|+++++.+.+.|+++|.|.+.....++.+. ...++.++++.+
T Consensus 140 ~~i~i-srGCp~~CsfC~~~~~~g----~~r~r~~e~I~~Ei~~l~~~g~~ei~l~~~~~~~y~~d~~~~~~l~~Ll~~l 214 (414)
T TIGR01579 140 AFIKV-QDGCNFFCSYCIIPFARG----RSRSVPMEAILKQVKILVAKGYKEIVLTGVNLGSYGDDLKNGTSLAKLLEQI 214 (414)
T ss_pred EEEEe-ccCcCCCCCCCceeeecC----CCccCCHHHHHHHHHHHHHCCCceEEEeeEccchhccCCCCCCcHHHHHHHH
Confidence 45777 999999999998864322 345579999999999999999999999875443333221 113455666655
Q ss_pred Hhc-Cce-EE---EeCCCCCHHHHHHHHHcC--CCeEecCCCch-HHHHhccCCCCCHHHHHHHHHHHHH--cCCceeec
Q 022946 169 RDM-GME-VC---CTLGMLEKHQAIELKKAG--LTAYNHNLDTS-REFYSKIITTRSYDERLETLKHVRE--AGINVCSG 238 (289)
Q Consensus 169 k~~-~~~-i~---~~~g~l~~e~l~~L~~aG--~~~v~i~let~-~~~~~~i~~~~~~~~~~~~i~~~~~--~Gi~v~~~ 238 (289)
.+. ++. +. .....++++.++.|+++| +..+.+|+||+ +++++.++++.+.+++.++++.+++ .|+.+.++
T Consensus 215 ~~~~~~~~ir~~~~~p~~~~~ell~~m~~~~~~~~~l~lglESgs~~vLk~m~R~~~~~~~~~~v~~l~~~~~gi~i~~~ 294 (414)
T TIGR01579 215 LQIPGIKRIRLSSIDPEDIDEELLEAIASEKRLCPHLHLSLQSGSDRVLKRMRRKYTRDDFLKLVNKLRSVRPDYAFGTD 294 (414)
T ss_pred hcCCCCcEEEEeCCChhhCCHHHHHHHHhcCccCCCeEECCCcCChHHHHhcCCCCCHHHHHHHHHHHHHhCCCCeeeee
Confidence 533 322 22 223457999999999987 78999999999 9999999999999999999999999 89999999
Q ss_pred EEeec-CCCHHHHHHHHHHHhcCCCCCCeeeeccceecCCCCCCCCC-CCC
Q 022946 239 GIIGL-GEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQK-LKY 287 (289)
Q Consensus 239 ~i~Gl-get~ed~~~~l~~l~~l~~~~~~v~i~~~~p~pgTpl~~~~-~~~ 287 (289)
+|+|+ |||++++.++++++.++ +++.+.++.|.|.||||++..+ +++
T Consensus 295 ~IvG~PgET~ed~~~tl~~i~~~--~~~~~~~~~~sp~pGT~~~~~~~~v~ 343 (414)
T TIGR01579 295 IIVGFPGESEEDFQETLRMVKEI--EFSHLHIFPYSARPGTPASTMKDKVP 343 (414)
T ss_pred EEEECCCCCHHHHHHHHHHHHhC--CCCEEEeeecCCCCCCchhhCCCCCC
Confidence 99999 99999999999999999 6899999999999999999975 444
No 31
>PRK14340 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=99.93 E-value=8.1e-25 Score=200.96 Aligned_cols=187 Identities=14% Similarity=0.218 Sum_probs=153.8
Q ss_pred eEeeccccCCCCcCCCCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHHcCCcEEEEecccCCCCCCchhHHHHHHHHHHH
Q 022946 89 CTLLSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDI 168 (289)
Q Consensus 89 ~~~i~~~t~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~~g~~~i~i~~~~~~~~ge~~~~~~l~e~i~~i 168 (289)
..++.+ ++|||++|+||..+... .+.+.+++++|+++++.+.+.|+++|.|.|.+.+.++.+.....+.++++.+
T Consensus 150 ~a~l~i-srGC~~~CsFC~ip~~r----G~~rsr~~e~Vv~Ei~~l~~~G~~ei~l~~~~~~~y~d~~~~~~l~~Ll~~l 224 (445)
T PRK14340 150 SAFVPV-MRGCNNMCAFCVVPFTR----GRERSHPFASVLDEVRALAEAGYREITLLGQNVNSYSDPEAGADFAGLLDAV 224 (445)
T ss_pred EEEEEe-ccCCCCCCCCCCccccc----CCCcCCCHHHHHHHHHHHHHCCCeEEEEeecccchhhccCCCchHHHHHHHH
Confidence 356777 99999999999987432 2345579999999999999999999999876544444332223455666655
Q ss_pred Hhc--CceE--EE-eCCCCCHHHHHHHHHc--CCCeEecCCCch-HHHHhccCCCCCHHHHHHHHHHHHHc--CCceeec
Q 022946 169 RDM--GMEV--CC-TLGMLEKHQAIELKKA--GLTAYNHNLDTS-REFYSKIITTRSYDERLETLKHVREA--GINVCSG 238 (289)
Q Consensus 169 k~~--~~~i--~~-~~g~l~~e~l~~L~~a--G~~~v~i~let~-~~~~~~i~~~~~~~~~~~~i~~~~~~--Gi~v~~~ 238 (289)
.+. ...+ .+ ++..++++.++.|+++ |+..+.+++||+ +++++.++++.+.+++.++++.+++. |+.+.++
T Consensus 225 ~~~~~~~rir~~~~~p~~l~~ell~~~~~~~~g~~~l~iglQSgsd~vLk~m~R~~t~~~~~~~v~~lr~~~pgi~i~td 304 (445)
T PRK14340 225 SRAAPEMRIRFTTSHPKDISESLVRTIAARPNICNHIHLPVQSGSSRMLRRMNRGHTIEEYLEKIALIRSAIPGVTLSTD 304 (445)
T ss_pred hhcCCCcEEEEccCChhhcCHHHHHHHHhCCCCCCeEEECCCcCCHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCEEecc
Confidence 432 2233 22 2445789999999996 799999999999 99999999999999999999999998 9999999
Q ss_pred EEeec-CCCHHHHHHHHHHHhcCCCCCCeeeeccceecCCCCCCC
Q 022946 239 GIIGL-GEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQD 282 (289)
Q Consensus 239 ~i~Gl-get~ed~~~~l~~l~~l~~~~~~v~i~~~~p~pgTpl~~ 282 (289)
+|+|+ |||++|+.++++++.++ +++.+.++.|.|.||||++.
T Consensus 305 ~IvGfPgET~edf~~tl~~~~~~--~~~~~~~f~~sp~pGT~~~~ 347 (445)
T PRK14340 305 LIAGFCGETEEDHRATLSLMEEV--RFDSAFMFYYSVRPGTLAAR 347 (445)
T ss_pred EEEECCCCCHHHHHHHHHHHHhc--CCCEEeeEEecCCCCChhhh
Confidence 99999 99999999999999999 68999999999999999985
No 32
>TIGR00510 lipA lipoate synthase. The family shows strong sequence conservation.
Probab=99.93 E-value=1.7e-24 Score=187.75 Aligned_cols=187 Identities=18% Similarity=0.244 Sum_probs=151.6
Q ss_pred eeccccCCCCcCCCCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHHcCCcEEEEecccCCCCCCchhHHHHHHHHHHHHh
Q 022946 91 LLSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRD 170 (289)
Q Consensus 91 ~i~~~t~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~~g~~~i~i~~~~~~~~ge~~~~~~l~e~i~~ik~ 170 (289)
++.+ +++|+.+|.||.++...+ +.. .+++++.++++.+.+.|+++++|+|++.+... +.....+.++++.+++
T Consensus 66 fm~i-~~gC~~~C~FC~v~~~rg----~~~-~~~eei~~~a~~~~~~GlkevvLTsv~~ddl~-d~g~~~l~~li~~I~~ 138 (302)
T TIGR00510 66 FMIL-GDICTRRCPFCDVAHGRN----PLP-PDPEEPAKLAETIKDMGLKYVVITSVDRDDLE-DGGASHLAECIEAIRE 138 (302)
T ss_pred EEec-CcCcCCCCCcCCccCCCC----CCC-CCHHHHHHHHHHHHHCCCCEEEEEeecCCCcc-cccHHHHHHHHHHHHh
Confidence 3445 999999999999974221 112 47899999999999999999999987654331 1234678888888875
Q ss_pred c--Cce--EEEeCCCCCHHHHHHHHHcCCCeEecCCCchHHHHhccCCCCCHHHHHHHHHHHHHc--CCceeecEEeecC
Q 022946 171 M--GME--VCCTLGMLEKHQAIELKKAGLTAYNHNLDTSREFYSKIITTRSYDERLETLKHVREA--GINVCSGGIIGLG 244 (289)
Q Consensus 171 ~--~~~--i~~~~g~l~~e~l~~L~~aG~~~v~i~let~~~~~~~i~~~~~~~~~~~~i~~~~~~--Gi~v~~~~i~Glg 244 (289)
. ++. +.+....-+.+.++.|+++|++.+.+++||.+++++.++++++++++++.++.+++. |+.+++++|+|+|
T Consensus 139 ~~p~i~Ievl~~d~~g~~e~l~~l~~aG~dv~~hnlEt~~~l~~~vrr~~t~e~~Le~l~~ak~~~pgi~~~TgiIVGlG 218 (302)
T TIGR00510 139 KLPNIKIETLVPDFRGNIAALDILLDAPPDVYNHNLETVERLTPFVRPGATYRWSLKLLERAKEYLPNLPTKSGIMVGLG 218 (302)
T ss_pred cCCCCEEEEeCCcccCCHHHHHHHHHcCchhhcccccchHHHHHHhCCCCCHHHHHHHHHHHHHhCCCCeecceEEEECC
Confidence 3 333 333221226788999999999999999999988999999999999999999999998 8999999999999
Q ss_pred CCHHHHHHHHHHHhcCCCCCCeeeeccc-ee-cCCCCCCCCCCC
Q 022946 245 EAEEDRVGLLHTLATLPTHPESVPINAL-LA-VKGTPLQDQKLK 286 (289)
Q Consensus 245 et~ed~~~~l~~l~~l~~~~~~v~i~~~-~p-~pgTpl~~~~~~ 286 (289)
||++|+.+++++|+++ +++.+.+..| .| .+++|+.....+
T Consensus 219 ETeee~~etl~~Lrel--g~d~v~igqYl~p~~~~~~v~~~~~p 260 (302)
T TIGR00510 219 ETNEEIKQTLKDLRDH--GVTMVTLGQYLRPSRRHLPVKRYVSP 260 (302)
T ss_pred CCHHHHHHHHHHHHhc--CCCEEEeecccCCCCCCCccccCCCH
Confidence 9999999999999999 6899999887 46 678998887654
No 33
>PRK14331 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=99.93 E-value=8.5e-25 Score=201.08 Aligned_cols=189 Identities=16% Similarity=0.241 Sum_probs=153.1
Q ss_pred eEeeccccCCCCcCCCCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHHcCCcEEEEecccCCCCCCchhHHHHHHHHHHH
Q 022946 89 CTLLSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDI 168 (289)
Q Consensus 89 ~~~i~~~t~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~~g~~~i~i~~~~~~~~ge~~~~~~l~e~i~~i 168 (289)
..++.+ ++|||++|+||..+... .+++..++++|+++++.+.+.|+++|.|.|.....+|.+..-..+.++++.+
T Consensus 147 ~a~v~i-~rGC~~~CsFC~~p~~~----g~~rsr~~e~V~~Ei~~l~~~g~~eI~l~d~~~~~y~~~~~~~~~~~Ll~~l 221 (437)
T PRK14331 147 CAYVTV-MRGCDKKCTYCVVPKTR----GKERSRRLGSILDEVQWLVDDGVKEIHLIGQNVTAYGKDIGDVPFSELLYAV 221 (437)
T ss_pred EEEEEe-ccCcCCCCccCCcccCC----CCcccCCHHHHHHHHHHHHHCCCeEEEEeeeccccccCCCCCCCHHHHHHHH
Confidence 356777 99999999999987432 2345579999999999999999999999875544333221112345555554
Q ss_pred Hhc-C---ceEEE-eCCCCCHHHHHHHHHc--CCCeEecCCCch-HHHHhccCCCCCHHHHHHHHHHHHHc--CCceeec
Q 022946 169 RDM-G---MEVCC-TLGMLEKHQAIELKKA--GLTAYNHNLDTS-REFYSKIITTRSYDERLETLKHVREA--GINVCSG 238 (289)
Q Consensus 169 k~~-~---~~i~~-~~g~l~~e~l~~L~~a--G~~~v~i~let~-~~~~~~i~~~~~~~~~~~~i~~~~~~--Gi~v~~~ 238 (289)
.+. + +.+.. +...++++.++.|+++ |+..+.+++||+ +++++.++++.+.+++.++++.+++. |+.+.++
T Consensus 222 ~~~~g~~~i~~~~~~p~~l~~ell~~~~~~~~~~~~l~igiqSgsd~vLk~m~R~~t~~~~~~~v~~lr~~~~gi~i~~d 301 (437)
T PRK14331 222 AEIDGVERIRFTTGHPRDLDEDIIKAMADIPQVCEHLHLPFQAGSDRILKLMDRGYTKEEYLEKIELLKEYIPDITFSTD 301 (437)
T ss_pred hcCCCccEEEEeccCcccCCHHHHHHHHcCCccCCceecccccCChHHHHHcCCCCCHHHHHHHHHHHHHhCCCCEEecC
Confidence 422 2 33322 2345899999999998 599999999999 99999999999999999999999998 9999999
Q ss_pred EEeec-CCCHHHHHHHHHHHhcCCCCCCeeeeccceecCCCCCCCCC
Q 022946 239 GIIGL-GEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQK 284 (289)
Q Consensus 239 ~i~Gl-get~ed~~~~l~~l~~l~~~~~~v~i~~~~p~pgTpl~~~~ 284 (289)
+|+|+ |||++|+.++++++.++ +++.+.++.|.|.||||+++.+
T Consensus 302 ~IvG~PgET~ed~~~tl~~l~~l--~~~~i~~f~~sp~pGT~~~~~~ 346 (437)
T PRK14331 302 IIVGFPTETEEDFEETLDVLKKV--EFEQVFSFKYSPRPGTPAAYME 346 (437)
T ss_pred EEEECCCCCHHHHHHHHHHHHhc--CcceeeeeEecCCCCcchhhCC
Confidence 99999 99999999999999999 6889999999999999999875
No 34
>PRK14327 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=99.93 E-value=1.6e-24 Score=200.66 Aligned_cols=190 Identities=15% Similarity=0.247 Sum_probs=155.6
Q ss_pred EeEeeccccCCCCcCCCCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHHcCCcEEEEecccCCCCCCchh--HHHHHHHH
Q 022946 88 QCTLLSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTN--FNQILEYV 165 (289)
Q Consensus 88 ~~~~i~~~t~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~~g~~~i~i~~~~~~~~ge~~~--~~~l~e~i 165 (289)
..+.+++ +.|||+.|+||..+... .+.+..++|+|+++++.+.+.|+++|.|.|...+.+|.+.. ...+.+++
T Consensus 212 ~~a~v~I-~~GC~~~CsFC~vp~~r----G~~Rsr~~e~Ii~Ei~~l~~~G~keI~L~g~n~~~yg~d~~~~~~~l~~Ll 286 (509)
T PRK14327 212 IKAWVNI-MYGCDKFCTYCIVPYTR----GKERSRRPEDIIQEVRHLARQGYKEITLLGQNVNAYGKDFEDIEYGLGDLM 286 (509)
T ss_pred eEEEEEe-cCCCCCCCcCCcccccC----CCCeeCCHHHHHHHHHHHHHCCCcEEEEEeeccccCcccccccchHHHHHH
Confidence 4567888 99999999999987432 23445799999999999999999999998866555553211 12355566
Q ss_pred HHHHhcCc---eEEE-eCCCCCHHHHHHHHHcC--CCeEecCCCch-HHHHhccCCCCCHHHHHHHHHHHHHc--CCcee
Q 022946 166 KDIRDMGM---EVCC-TLGMLEKHQAIELKKAG--LTAYNHNLDTS-REFYSKIITTRSYDERLETLKHVREA--GINVC 236 (289)
Q Consensus 166 ~~ik~~~~---~i~~-~~g~l~~e~l~~L~~aG--~~~v~i~let~-~~~~~~i~~~~~~~~~~~~i~~~~~~--Gi~v~ 236 (289)
+.+.+.++ .+.+ ++..++++.++.|+++| +..+.+++||+ +++++.++++++.+++++.++.+++. |+.++
T Consensus 287 ~~I~~~~i~~ir~~s~~P~~i~deli~~m~~~g~~~~~l~lgvQSgsd~vLk~M~R~~t~e~~~~~v~~lr~~~p~i~i~ 366 (509)
T PRK14327 287 DEIRKIDIPRVRFTTSHPRDFDDHLIEVLAKGGNLVEHIHLPVQSGSTEVLKIMARKYTRESYLELVRKIKEAIPNVALT 366 (509)
T ss_pred HHHHhCCCceEEEeecCcccCCHHHHHHHHhcCCccceEEeccCCCCHHHHHhcCCCCCHHHHHHHHHHHHHhCCCcEEe
Confidence 66554343 3322 34568999999999999 67999999999 99999999999999999999999997 67788
Q ss_pred ecEEeec-CCCHHHHHHHHHHHhcCCCCCCeeeeccceecCCCCCCCCC
Q 022946 237 SGGIIGL-GEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQK 284 (289)
Q Consensus 237 ~~~i~Gl-get~ed~~~~l~~l~~l~~~~~~v~i~~~~p~pgTpl~~~~ 284 (289)
+++|+|+ |||.+|+.++++++.++ +++.+.++.|.|.||||++..+
T Consensus 367 tdiIvGfPgET~edf~~Tl~~v~~l--~~d~~~~f~ysprpGT~a~~~~ 413 (509)
T PRK14327 367 TDIIVGFPNETDEQFEETLSLYREV--GFDHAYTFIYSPREGTPAAKMK 413 (509)
T ss_pred eeEEEeCCCCCHHHHHHHHHHHHHc--CCCeEEEeeeeCCCCCchHhCc
Confidence 8999999 99999999999999999 6899999999999999998754
No 35
>TIGR02026 BchE magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase. This model respresents the cobalamin-dependent oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under anaerobic conditions. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under anaerobic conditions (a separate enzyme, AcsF, acts under aerobic conditions). This model identifies two clades of sequences, one from photosynthetic, non-cyanobacterial bacteria and another including Synechocystis and several non-photosynthetic bacteria. The function of the Synechocystis gene is supported by gene clustering with other photosynthetic genes, so the purpose of the gene in the non-photosynthetic bacteria is uncertain. Note that homologs of this gene are not found in plants which rely solely on the aerobic cyclase.
Probab=99.93 E-value=6.6e-25 Score=204.77 Aligned_cols=180 Identities=13% Similarity=0.156 Sum_probs=148.4
Q ss_pred eccccCCCCcCCCCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHH-HcCCcEEEEecccCCCCCCchhHHHHHHHHHHHHh
Q 022946 92 LSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAK-EAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRD 170 (289)
Q Consensus 92 i~~~t~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~-~~g~~~i~i~~~~~~~~ge~~~~~~l~e~i~~ik~ 170 (289)
++. |+|||++|+||+.+..+ .+++..+++.|+++++.+. ++|+..|.|.+.. +.. ..+++.++++.+.+
T Consensus 197 i~t-SRGCp~~C~FC~~~~~~----~~~R~rs~e~Vv~Ei~~l~~~~gv~~~~~~Dd~--f~~---~~~~~~~l~~~l~~ 266 (497)
T TIGR02026 197 PNF-ARGCPFTCNFCSQWKFW----RRYRHRDPKKFVDEIEWLVRTHGVGFFILADEE--PTI---NRKKFQEFCEEIIA 266 (497)
T ss_pred eec-cCCCCCCCCCCCCCCCC----ceeecCCHHHHHHHHHHHHHHcCCCEEEEEecc--ccc---CHHHHHHHHHHHHh
Confidence 555 99999999999987432 3456679999999999886 4899988887632 222 23455666666553
Q ss_pred c---CceEEEe--CCC--CCHHHHHHHHHcCCCeEecCCCch-HHHHhccCCCCCHHHHHHHHHHHHHcCCceeecEEee
Q 022946 171 M---GMEVCCT--LGM--LEKHQAIELKKAGLTAYNHNLDTS-REFYSKIITTRSYDERLETLKHVREAGINVCSGGIIG 242 (289)
Q Consensus 171 ~---~~~i~~~--~g~--l~~e~l~~L~~aG~~~v~i~let~-~~~~~~i~~~~~~~~~~~~i~~~~~~Gi~v~~~~i~G 242 (289)
. ++.+.++ ... .+++.++.|+++|+.+|.+|+||. +++++.++++.+.++..++++.++++|+.+..++|+|
T Consensus 267 ~~~l~i~w~~~~r~~~i~~d~ell~~l~~aG~~~v~iGiES~~~~~L~~~~K~~t~~~~~~ai~~l~~~Gi~~~~~~I~G 346 (497)
T TIGR02026 267 RNPISVTWGINTRVTDIVRDADILHLYRRAGLVHISLGTEAAAQATLDHFRKGTTTSTNKEAIRLLRQHNILSEAQFITG 346 (497)
T ss_pred cCCCCeEEEEecccccccCCHHHHHHHHHhCCcEEEEccccCCHHHHHHhcCCCCHHHHHHHHHHHHHCCCcEEEEEEEE
Confidence 3 3443332 222 378999999999999999999999 9999999999999999999999999999999999999
Q ss_pred c-CCCHHHHHHHHHHHhcCCCCCCeeeeccceecCCCCCCCC
Q 022946 243 L-GEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQ 283 (289)
Q Consensus 243 l-get~ed~~~~l~~l~~l~~~~~~v~i~~~~p~pgTpl~~~ 283 (289)
+ |||.+++.++++++.++ +++.+.++.+.|+|||||++.
T Consensus 347 ~P~et~e~~~~t~~~~~~l--~~~~~~~~~~tP~PGT~l~~~ 386 (497)
T TIGR02026 347 FENETDETFEETYRQLLDW--DPDQANWLMYTPWPFTSLFGE 386 (497)
T ss_pred CCCCCHHHHHHHHHHHHHc--CCCceEEEEecCCCCcHHHHH
Confidence 9 99999999999999999 689999999999999999864
No 36
>TIGR01125 MiaB-like tRNA modifying enzyme YliG, TIGR01125. This clade spans alpha and gamma proteobacteria, cyano bacteria, deinococcus, porphyromonas, aquifex, helicobacter, campylobacter, thermotoga, chlamydia, streptococcus coelicolor and clostridium, but does not include most other gram positive bacteria, archaea or eukaryotes.
Probab=99.93 E-value=2e-24 Score=198.47 Aligned_cols=188 Identities=15% Similarity=0.236 Sum_probs=152.7
Q ss_pred EeeccccCCCCcCCCCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHHcCCcEEEEecccCCCCCCch-hHHHHHHHHHHH
Q 022946 90 TLLSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKT-NFNQILEYVKDI 168 (289)
Q Consensus 90 ~~i~~~t~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~~g~~~i~i~~~~~~~~ge~~-~~~~l~e~i~~i 168 (289)
..|.+ ++|||++|+||..+..++ +++.+++++|+++++.+.+.|+++|.|.+.+...+|.+. ...++.++++.+
T Consensus 137 ~~i~~-srGC~~~CsfC~~~~~~G----~~r~r~~e~Vv~Ei~~l~~~g~k~i~~~~~d~~~~g~d~~~~~~l~~Ll~~i 211 (430)
T TIGR01125 137 AYLKV-AEGCNRRCAFCIIPSIRG----KLRSRPIEEILKEAERLVDQGVKEIILIAQDTTAYGKDLYRESKLVDLLEEL 211 (430)
T ss_pred EEEEE-ccCCCCCCCcCCeecccC----CceecCHHHHHHHHHHHHHCCCcEEEEEeECCCccccCCCCcccHHHHHHHH
Confidence 34777 999999999999875332 345579999999999999999999998874443344321 123456666666
Q ss_pred HhcC-ceE----EEeCCCCCHHHHHHHHHcC--CCeEecCCCch-HHHHhccCCCCCHHHHHHHHHHHHHc--CCceeec
Q 022946 169 RDMG-MEV----CCTLGMLEKHQAIELKKAG--LTAYNHNLDTS-REFYSKIITTRSYDERLETLKHVREA--GINVCSG 238 (289)
Q Consensus 169 k~~~-~~i----~~~~g~l~~e~l~~L~~aG--~~~v~i~let~-~~~~~~i~~~~~~~~~~~~i~~~~~~--Gi~v~~~ 238 (289)
.+.+ +.. ...+..++++.++.|+++| +..+.+++||. +++++.++++.+.+++.++++.++++ |+.+.++
T Consensus 212 ~~~~~i~~~r~~~~~p~~~~~ell~~~~~~~~~~~~l~iglES~s~~vLk~m~k~~~~~~~~~~i~~l~~~~~~i~i~~~ 291 (430)
T TIGR01125 212 GKVGGIYWIRMHYLYPDELTDDVIDLMAEGPKVLPYLDIPLQHASDRILKLMRRPGSGEQQLDFIERLREKCPDAVLRTT 291 (430)
T ss_pred HhcCCccEEEEccCCcccCCHHHHHHHhhCCcccCceEeCCCCCCHHHHhhCCCCCCHHHHHHHHHHHHHhCCCCeEeEE
Confidence 5443 332 1224558999999999995 78999999999 99999999999999999999999998 5668899
Q ss_pred EEeec-CCCHHHHHHHHHHHhcCCCCCCeeeeccceecCCCCCCCCC
Q 022946 239 GIIGL-GEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQK 284 (289)
Q Consensus 239 ~i~Gl-get~ed~~~~l~~l~~l~~~~~~v~i~~~~p~pgTpl~~~~ 284 (289)
+|+|+ |||.+++.++++++.++ +++.+.++.|.|.||||++..+
T Consensus 292 ~I~G~PgET~e~~~~t~~fl~~~--~~~~~~~~~~sp~pGT~~~~~~ 336 (430)
T TIGR01125 292 FIVGFPGETEEDFQELLDFVEEG--QFDRLGAFTYSPEEGTDAFALP 336 (430)
T ss_pred EEEECCCCCHHHHHHHHHHHHhc--CCCEEeeeeccCCCCCccccCC
Confidence 99999 99999999999999999 6899999999999999998865
No 37
>PRK14338 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=99.93 E-value=2.3e-24 Score=199.06 Aligned_cols=189 Identities=16% Similarity=0.269 Sum_probs=157.1
Q ss_pred eEeeccccCCCCcCCCCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHHcCCcEEEEecccCCCCCCch-hHHHHHHHHHH
Q 022946 89 CTLLSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKT-NFNQILEYVKD 167 (289)
Q Consensus 89 ~~~i~~~t~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~~g~~~i~i~~~~~~~~ge~~-~~~~l~e~i~~ 167 (289)
..++.+ ++|||++|+||..+...+ +.+.+++++|+++++.+.+.|+++|.|.|...+.+|.+. ....+.++++.
T Consensus 156 ~~~i~I-~rGC~~~CsfC~~p~~~G----~~rsr~~e~Il~ei~~l~~~G~keI~l~g~~~~~yG~d~~~~~~l~~Ll~~ 230 (459)
T PRK14338 156 TVHVPI-IYGCNMSCSYCVIPLRRG----RERSRPLAEIVEEVRRIAARGAKEITLLGQIVDSYGHDLPGRPDLADLLEA 230 (459)
T ss_pred EEEEEc-ccCCCCCCCcCCeeccCC----CCccCCHHHHHHHHHHHHHCCCeEEEEeeecCCCcccccCChHHHHHHHHH
Confidence 356777 999999999999874322 335579999999999999999999999886555555542 23457777777
Q ss_pred HHhc-C---ceEEE-eCCCCCHHHHHHHHHc--CCCeEecCCCch-HHHHhccCCCCCHHHHHHHHHHHHHc--CCceee
Q 022946 168 IRDM-G---MEVCC-TLGMLEKHQAIELKKA--GLTAYNHNLDTS-REFYSKIITTRSYDERLETLKHVREA--GINVCS 237 (289)
Q Consensus 168 ik~~-~---~~i~~-~~g~l~~e~l~~L~~a--G~~~v~i~let~-~~~~~~i~~~~~~~~~~~~i~~~~~~--Gi~v~~ 237 (289)
+.+. + +.+.+ +...++++.++.|+++ |+..+.+++||. +++++.++++++.++++++++.+++. |+.+.+
T Consensus 231 l~~~~gi~~ir~~~~~p~~i~~ell~~l~~~~~~~~~v~lglQSgsd~vLk~m~R~~t~e~~~~~i~~lr~~~pgi~i~~ 310 (459)
T PRK14338 231 VHEIPGLERLRFLTSHPAWMTDRLIHAVARLPKCCPHINLPVQAGDDEVLKRMRRGYTVARYRELIARIREAIPDVSLTT 310 (459)
T ss_pred HHhcCCcceEEEEecChhhcCHHHHHHHhcccccccceecCcccCCHHHHHhccCCCCHHHHHHHHHHHHHhCCCCEEEE
Confidence 6643 3 33333 3456899999999995 589999999999 99999999999999999999999997 788999
Q ss_pred cEEeec-CCCHHHHHHHHHHHhcCCCCCCeeeeccceecCCCCCCCCC
Q 022946 238 GGIIGL-GEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQK 284 (289)
Q Consensus 238 ~~i~Gl-get~ed~~~~l~~l~~l~~~~~~v~i~~~~p~pgTpl~~~~ 284 (289)
++|+|+ |||.+|+.++++++.++ +++.+.++.|.|.||||++..+
T Consensus 311 d~IvG~PgET~ed~~~ti~~l~~l--~~~~v~i~~ysp~pGT~~~~~~ 356 (459)
T PRK14338 311 DIIVGHPGETEEQFQRTYDLLEEI--RFDKVHIAAYSPRPGTLAAEME 356 (459)
T ss_pred EEEEECCCCCHHHHHHHHHHHHHc--CCCEeEEEecCCCCCChhhhCc
Confidence 999999 99999999999999999 6899999999999999998764
No 38
>PRK14325 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=99.93 E-value=1.8e-24 Score=199.59 Aligned_cols=191 Identities=14% Similarity=0.192 Sum_probs=152.9
Q ss_pred EeeccccCCCCcCCCCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHHcCCcEEEEecccCCCCCCc---hhHHHHHHHHH
Q 022946 90 TLLSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRK---TNFNQILEYVK 166 (289)
Q Consensus 90 ~~i~~~t~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~~g~~~i~i~~~~~~~~ge~---~~~~~l~e~i~ 166 (289)
..+.+ ++|||++|+||..+...+ +.+..++++|+++++.+.+.|+++|.|.+...+.++.. .....+.++++
T Consensus 149 ~~i~i-srGCp~~CsFC~~p~~~G----~~~sr~~e~Iv~Ei~~l~~~g~~ei~l~d~~~~~y~~~~~~~~~~~l~~Ll~ 223 (444)
T PRK14325 149 AFVSI-MEGCDKYCTFCVVPYTRG----EEVSRPVDDVLAEVAQLAEQGVREITLLGQNVNAYRGEGPDGEIADFAELLR 223 (444)
T ss_pred EEEEh-hhCCCCCCCccccCcccC----CcccCCHHHHHHHHHHHHHCCCcEEEEEeeccccccCCCCCCCcchHHHHHH
Confidence 45666 899999999999874322 22347999999999999999999999987554333111 01124555555
Q ss_pred HHHhc-C---ceEEE-eCCCCCHHHHHHHHHcC--CCeEecCCCch-HHHHhccCCCCCHHHHHHHHHHHHHc--CCcee
Q 022946 167 DIRDM-G---MEVCC-TLGMLEKHQAIELKKAG--LTAYNHNLDTS-REFYSKIITTRSYDERLETLKHVREA--GINVC 236 (289)
Q Consensus 167 ~ik~~-~---~~i~~-~~g~l~~e~l~~L~~aG--~~~v~i~let~-~~~~~~i~~~~~~~~~~~~i~~~~~~--Gi~v~ 236 (289)
.+.+. + +.+.. ++..++++.++.|+++| +.++.+++||. +++++.++++.+.+++.++++.++++ |+.+.
T Consensus 224 ~l~~~~~~~~ir~~~~~p~~~~~ell~~l~~~~~~~~~l~igiqSgs~~vLk~m~R~~~~~~~~~~i~~lr~~~~gi~v~ 303 (444)
T PRK14325 224 LVAAIDGIERIRYTTSHPRDFTDDLIEAYADLPKLVPFLHLPVQSGSDRILKAMNRGHTALEYKSIIRKLRAARPDIAIS 303 (444)
T ss_pred HHHhcCCccEEEEccCCcccCCHHHHHHHHcCCcccCceeccCCcCCHHHHHhCCCCCCHHHHHHHHHHHHHHCCCCEEE
Confidence 55432 2 33322 34458999999999985 89999999999 99999999999999999999999997 78899
Q ss_pred ecEEeec-CCCHHHHHHHHHHHhcCCCCCCeeeeccceecCCCCCCCCC-CCC
Q 022946 237 SGGIIGL-GEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQK-LKY 287 (289)
Q Consensus 237 ~~~i~Gl-get~ed~~~~l~~l~~l~~~~~~v~i~~~~p~pgTpl~~~~-~~~ 287 (289)
+++|+|+ |||.+++.++++++.++ +++.+.++.|.|.||||++..+ +++
T Consensus 304 ~~~IvG~PgET~ed~~~tl~~i~~~--~~~~~~~~~~sp~pGT~~~~~~~~v~ 354 (444)
T PRK14325 304 SDFIVGFPGETDEDFEATMKLIEDV--GFDQSFSFIYSPRPGTPAADLPDDVP 354 (444)
T ss_pred eeEEEECCCCCHHHHHHHHHHHHhc--CCCeeeeeeccCCCCCchhhCCCCCC
Confidence 9999999 99999999999999999 6899999999999999999976 444
No 39
>PRK14339 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=99.93 E-value=2.4e-24 Score=196.82 Aligned_cols=192 Identities=15% Similarity=0.223 Sum_probs=154.0
Q ss_pred eEeeccccCCCCcCCCCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHHcCCcEEEEecccCCCCCCch----hHHHHHHH
Q 022946 89 CTLLSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKT----NFNQILEY 164 (289)
Q Consensus 89 ~~~i~~~t~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~~g~~~i~i~~~~~~~~ge~~----~~~~l~e~ 164 (289)
.++|.+ ++|||++|.||..+..++ +.+..++|+|+++++.+.+.|+++|.|.|...+.+|.+. ....+.++
T Consensus 128 ~a~i~i-srGC~~~CsFC~ip~~rG----~~~sr~~e~I~~Ei~~l~~~G~keI~l~~~~~~~yg~d~~~~~~~~~l~~L 202 (420)
T PRK14339 128 KSLVNI-SIGCDKKCTYCIVPHTRG----KEISIPMDLILKEAEKAVNNGAKEIFLLGQNVNNYGKRFSSEHEKVDFSDL 202 (420)
T ss_pred EEEEEe-cCCCCCCCCcCCcccccC----CCCCCCHHHHHHHHHHHHHCCCcEEEEeeeccccccCCCcCCcccccHHHH
Confidence 467888 999999999999875332 222369999999999999999999999885544444321 11235566
Q ss_pred HHHHHhc-Cc---eEE-EeCCCCCHHHHHHHHHc--CCCeEecCCCch-HHHHhccCCCCCHHHHHHHHHHHHHc--CCc
Q 022946 165 VKDIRDM-GM---EVC-CTLGMLEKHQAIELKKA--GLTAYNHNLDTS-REFYSKIITTRSYDERLETLKHVREA--GIN 234 (289)
Q Consensus 165 i~~ik~~-~~---~i~-~~~g~l~~e~l~~L~~a--G~~~v~i~let~-~~~~~~i~~~~~~~~~~~~i~~~~~~--Gi~ 234 (289)
++.+.+. ++ .+. .++..++++.++.|+++ |+..+.+++||. +++++.++++.+.++++++++.+++. |+.
T Consensus 203 l~~l~~~~g~~~ir~~s~~p~~~~~ell~~~~~~~~~~~~l~iglQSgsd~vLk~M~R~~t~~~~~~~v~~lr~~~p~i~ 282 (420)
T PRK14339 203 LDKLSEIEGLERIRFTSPHPLHMDDKFLEEFAKNPKICKSIHMPLQSGSSEILKAMKRGYTKEWFLNRAEKLRALVPEVS 282 (420)
T ss_pred HHHHhcCCCccEEEECCCChhhcCHHHHHHHHcCCCccCceEeCCccCCHHHHHhccCCCCHHHHHHHHHHHHHHCCCCE
Confidence 6555432 33 322 22334789999999998 689999999999 99999999999999999999999997 788
Q ss_pred eeecEEeec-CCCHHHHHHHHHHHhcCCCCCCeeeeccceecCCCCCCCCC-CCC
Q 022946 235 VCSGGIIGL-GEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQK-LKY 287 (289)
Q Consensus 235 v~~~~i~Gl-get~ed~~~~l~~l~~l~~~~~~v~i~~~~p~pgTpl~~~~-~~~ 287 (289)
+.+++|+|+ |||++|+.++++++.++ +++.+.++.|.|.||||+++.+ +++
T Consensus 283 i~~d~IvGfPgETeedf~~Tl~fl~~l--~~~~~~~f~~sp~pGT~a~~~~~~v~ 335 (420)
T PRK14339 283 ISTDIIVGFPGESDKDFEDTMDVLEKV--RFEQIFSFKYSPRPLTEAAAWKNQVD 335 (420)
T ss_pred EEEEEEEECCCCCHHHHHHHHHHHHhc--CCCEEeeEecCCCCCCchhhCCCCCC
Confidence 999999999 99999999999999999 6788999999999999998865 444
No 40
>PTZ00413 lipoate synthase; Provisional
Probab=99.93 E-value=1.1e-23 Score=183.68 Aligned_cols=174 Identities=21% Similarity=0.342 Sum_probs=149.7
Q ss_pred ccCCCCcCCCCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHHcCCcEEEEecccCCCCCCchhHHHHHHHHHHHHhc--C
Q 022946 95 KTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDM--G 172 (289)
Q Consensus 95 ~t~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~~g~~~i~i~~~~~~~~ge~~~~~~l~e~i~~ik~~--~ 172 (289)
+++.|+.+|.||+++... . ...++++|+.+.++.+.+.|++.+++++++.+.. .+...+.+.+.++.+++. +
T Consensus 155 lG~~CTr~C~FCaqstg~----~-p~~lD~eEp~~vA~av~~~Gl~~~VVTSv~RDDL-~D~ga~~~a~~I~~Ir~~~p~ 228 (398)
T PTZ00413 155 MGDHCTRGCRFCSVKTSR----K-PPPLDPNEPEKVAKAVAEMGVDYIVMTMVDRDDL-PDGGASHVARCVELIKESNPE 228 (398)
T ss_pred cCCCCCCCCCCCCCCCCC----C-CCCCCHHHHHHHHHHHHHcCCCEEEEEEEcCCCC-ChhhHHHHHHHHHHHHccCCC
Confidence 489999999999997422 1 2447999999999999999999888877765432 234678999999999853 6
Q ss_pred ceEEEeCCCC--CHHHHHHHHHcCCCeEecCCCchHHHHhccCC-CCCHHHHHHHHHHHHHc---CCceeecEEeecCCC
Q 022946 173 MEVCCTLGML--EKHQAIELKKAGLTAYNHNLDTSREFYSKIIT-TRSYDERLETLKHVREA---GINVCSGGIIGLGEA 246 (289)
Q Consensus 173 ~~i~~~~g~l--~~e~l~~L~~aG~~~v~i~let~~~~~~~i~~-~~~~~~~~~~i~~~~~~---Gi~v~~~~i~Glget 246 (289)
+.+++..|.+ +.+.++.|+++|++.+++++||.++.|..++. .++|++.+++|+.+++. |+.+++++|+|+|||
T Consensus 229 ~~IevligDf~g~~e~l~~L~eAG~dvynHNLETv~rLyp~VRt~~atYe~sLe~Lr~AKe~f~~gi~tcSGiIVGLGET 308 (398)
T PTZ00413 229 LLLEALVGDFHGDLKSVEKLANSPLSVYAHNIECVERITPYVRDRRASYRQSLKVLEHVKEFTNGAMLTKSSIMLGLGET 308 (398)
T ss_pred CeEEEcCCccccCHHHHHHHHhcCCCEEecccccCHhHHHHHccCcCCHHHHHHHHHHHHHHhcCCceEeeeeEecCCCC
Confidence 7788887865 89999999999999999999999999999995 68999999999999987 999999999999999
Q ss_pred HHHHHHHHHHHhcCCCCCCeeeeccc-eecC
Q 022946 247 EEDRVGLLHTLATLPTHPESVPINAL-LAVK 276 (289)
Q Consensus 247 ~ed~~~~l~~l~~l~~~~~~v~i~~~-~p~p 276 (289)
++|+.+++..|+++ +++.++|..| .|.+
T Consensus 309 ~eEvie~m~dLrel--GVDivtIGQYL~Ps~ 337 (398)
T PTZ00413 309 EEEVRQTLRDLRTA--GVSAVTLGQYLQPTK 337 (398)
T ss_pred HHHHHHHHHHHHHc--CCcEEeeccccCCCc
Confidence 99999999999999 6999999555 5543
No 41
>TIGR00089 RNA modification enzyme, MiaB family. This subfamily is aparrently a part of a larger superfamily of enzymes utilizing both a 4Fe4S cluster and S-adenosyl methionine (SAM) to initiate radical reactions. MiaB acts on a particular isoprenylated Adenine base of certain tRNAs causing thiolation at an aromatic carbon, and probably also transferring a methyl grouyp from SAM to the thiol. The particular substrate of the three other clades is unknown but may be very closely related.
Probab=99.93 E-value=2.1e-24 Score=198.51 Aligned_cols=188 Identities=14% Similarity=0.275 Sum_probs=153.7
Q ss_pred EeeccccCCCCcCCCCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHHcCCcEEEEecccCCCCCCchh-HHHHHHHHHHH
Q 022946 90 TLLSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTN-FNQILEYVKDI 168 (289)
Q Consensus 90 ~~i~~~t~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~~g~~~i~i~~~~~~~~ge~~~-~~~l~e~i~~i 168 (289)
.++.+ ++|||++|.||..+..++ +.+..++++|+++++.+.+.|+++|.|.+.+...+|.+.. ...+.++++.+
T Consensus 141 ~~i~~-srGC~~~CsfC~~~~~~g----~~r~r~~e~Vv~Ei~~l~~~g~~ei~l~~~~~~~yg~d~~~~~~l~~Ll~~l 215 (429)
T TIGR00089 141 AFLKI-QEGCDKFCTYCIVPYARG----RERSRPPEDILEEVKELVSKGVKEIVLLGQNVGAYGKDLKGETNLADLLREL 215 (429)
T ss_pred EEEEH-HhCcCCCCCcCceecccC----CCCCCCHHHHHHHHHHHHHCCCceEEEEeeccccccCCCCCCcCHHHHHHHH
Confidence 45666 999999999999875332 4455799999999999999999999998754433333211 12456666666
Q ss_pred Hhc-Cce-EEE---eCCCCCHHHHHHHHHcC--CCeEecCCCch-HHHHhccCCCCCHHHHHHHHHHHHHcC--Cceeec
Q 022946 169 RDM-GME-VCC---TLGMLEKHQAIELKKAG--LTAYNHNLDTS-REFYSKIITTRSYDERLETLKHVREAG--INVCSG 238 (289)
Q Consensus 169 k~~-~~~-i~~---~~g~l~~e~l~~L~~aG--~~~v~i~let~-~~~~~~i~~~~~~~~~~~~i~~~~~~G--i~v~~~ 238 (289)
++. ++. +.. +...++++.++.|+++| +.++.+++||. +++++.++++++.+++.++++.+++.| +.+.++
T Consensus 216 ~~~~g~~~i~~~~~~p~~i~~ell~~m~~~~~~~~~l~igiES~s~~vLk~m~R~~~~~~~~~~i~~lr~~~~~i~i~~~ 295 (429)
T TIGR00089 216 SKIDGIERIRFGSSHPDDVTDDLIELIAENPKVCKHLHLPVQSGSDRILKRMNRKYTREEYLDIVEKIRAKIPDAAITTD 295 (429)
T ss_pred hcCCCCCEEEECCCChhhcCHHHHHHHHhCCCccCceeeccccCChHHHHhCCCCCCHHHHHHHHHHHHHHCCCCEEEee
Confidence 543 332 221 23457899999999995 99999999999 999999999999999999999999998 789999
Q ss_pred EEeec-CCCHHHHHHHHHHHhcCCCCCCeeeeccceecCCCCCCCCC
Q 022946 239 GIIGL-GEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQK 284 (289)
Q Consensus 239 ~i~Gl-get~ed~~~~l~~l~~l~~~~~~v~i~~~~p~pgTpl~~~~ 284 (289)
+|+|+ |||.+++.++++++.++ +++.+.++.|.|.||||++..+
T Consensus 296 ~IvG~PgET~ed~~~tl~~i~~~--~~~~~~~~~~sp~pgT~~~~~~ 340 (429)
T TIGR00089 296 IIVGFPGETEEDFEETLDLVEEV--KFDKLHSFIYSPRPGTPAADMK 340 (429)
T ss_pred EEEECCCCCHHHHHHHHHHHHhc--CCCEeeccccCCCCCCchhhCC
Confidence 99999 99999999999999999 6899999999999999999875
No 42
>TIGR01578 MiaB-like-B MiaB-like tRNA modifying enzyme, archaeal-type. This clade is a member of a subfamily (TIGR00089) and spans the archaea and eukaryotes. The only archaeal miaB-like genes are in this clade, while eukaryotes have sequences described by this model as well as ones falling within the scope of the MiaB equivalog model.
Probab=99.92 E-value=3.4e-24 Score=196.01 Aligned_cols=192 Identities=15% Similarity=0.276 Sum_probs=151.9
Q ss_pred eEeeccccCCCCcCCCCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHHcCCcEEEEecccCCCCCCc--hhHHHHHHHHH
Q 022946 89 CTLLSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRK--TNFNQILEYVK 166 (289)
Q Consensus 89 ~~~i~~~t~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~~g~~~i~i~~~~~~~~ge~--~~~~~l~e~i~ 166 (289)
...|.+ ++|||++|+||..+... .+.+.+++|+|+++++.+.+.|+++|+|.|.+...+|.+ ..+..+++.+.
T Consensus 134 ~~~i~i-srGC~~~CsfC~ip~~~----G~~rsr~~e~Vl~Ei~~l~~~G~~ei~l~g~d~~~yg~d~~~~l~~Ll~~l~ 208 (420)
T TIGR01578 134 IEIIPI-NQGCLGNCSYCITKHAR----GKLASYPPEKIVEKARQLVAEGCKEIWITSQDTGAYGRDIGSRLPELLRLIT 208 (420)
T ss_pred EEEEEE-ccCCCCCCCCCccccCC----CCcccCCHHHHHHHHHHHHHCCCeEEEEEeeccccccCCCCcCHHHHHHHHH
Confidence 356787 99999999999987432 234557999999999999999999999987554434432 23455555554
Q ss_pred HHHh-cCceEEE-eCC---CCCHHHHHHHHHcC-CCeEecCCCch-HHHHhccCCCCCHHHHHHHHHHHHHc--CCceee
Q 022946 167 DIRD-MGMEVCC-TLG---MLEKHQAIELKKAG-LTAYNHNLDTS-REFYSKIITTRSYDERLETLKHVREA--GINVCS 237 (289)
Q Consensus 167 ~ik~-~~~~i~~-~~g---~l~~e~l~~L~~aG-~~~v~i~let~-~~~~~~i~~~~~~~~~~~~i~~~~~~--Gi~v~~ 237 (289)
.++. ..+.+.. ++. .++++.++.++..+ +..+.+++||. +++++.++++.+.+++.++++.+++. |+.+.+
T Consensus 209 ~i~~~~~ir~~~~~p~~~~~~~~~l~~~~~~~~~~~~l~iglQSgsd~iL~~m~R~~~~~~~~~~i~~i~~~~~~i~i~~ 288 (420)
T TIGR01578 209 EIPGEFRLRVGMMNPKNVLEILDELANVYQHEKVYKFLHLPVQSGSDSVLKEMKREYTVSDFEDIVDKFRERFPDLTLST 288 (420)
T ss_pred hCCCCcEEEEcCCCCCcccccCHHHHHHHhcccccCceEeCCccCCHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCEEEe
Confidence 4432 1223221 121 24677777777554 68899999999 99999999999999999999999998 888999
Q ss_pred cEEeec-CCCHHHHHHHHHHHhcCCCCCCeeeeccceecCCCCCCCCCCCC
Q 022946 238 GGIIGL-GEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQKLKY 287 (289)
Q Consensus 238 ~~i~Gl-get~ed~~~~l~~l~~l~~~~~~v~i~~~~p~pgTpl~~~~~~~ 287 (289)
++|+|+ |||.+|+.++++++.++ +++.+.++.|.|.||||++..++++
T Consensus 289 ~~IvG~PgET~ed~~~t~~~~~~~--~~~~i~~~~~~p~pGT~~~~~~~v~ 337 (420)
T TIGR01578 289 DIIVGFPTETDDDFEETMELLRKY--RPEKINITKFSPRPGTPAAKMKRIP 337 (420)
T ss_pred eEEEeCCCCCHHHHHHHHHHHHHh--CCCEEEEEEeeCCCCCcccCCCCCC
Confidence 999999 99999999999999999 6899999999999999999877654
No 43
>PRK14326 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=99.92 E-value=4.1e-24 Score=198.78 Aligned_cols=188 Identities=16% Similarity=0.227 Sum_probs=153.0
Q ss_pred EeeccccCCCCcCCCCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHHcCCcEEEEecccCCCCCCc-hhHHHHHHHHHHH
Q 022946 90 TLLSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRK-TNFNQILEYVKDI 168 (289)
Q Consensus 90 ~~i~~~t~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~~g~~~i~i~~~~~~~~ge~-~~~~~l~e~i~~i 168 (289)
..|.+ ++|||++|+||..+..++ +.+.+++|+|+++++.+.+.|+++|.|.|...+.+|.+ .....+.++++.+
T Consensus 159 a~v~i-srGCp~~CsFC~ip~~rG----~~rsr~~e~Vv~Ei~~l~~~g~~ei~l~d~n~~~yG~d~~~~~~l~~Ll~~l 233 (502)
T PRK14326 159 AWVSI-SVGCNNTCTFCIVPSLRG----KEKDRRPGDILAEVQALVDEGVLEVTLLGQNVNAYGVSFGDRGAFSKLLRAC 233 (502)
T ss_pred EEEEE-ccCCCCCCccCceeccCC----CcccCCHHHHHHHHHHHHHCCCceEEEEeecccccccCCCCHHHHHHHHHHH
Confidence 56777 999999999999875432 23446999999999999999999999987654444432 1223455555554
Q ss_pred Hhc-C---ceEE-EeCCCCCHHHHHHHHHcC--CCeEecCCCch-HHHHhccCCCCCHHHHHHHHHHHHHc--CCceeec
Q 022946 169 RDM-G---MEVC-CTLGMLEKHQAIELKKAG--LTAYNHNLDTS-REFYSKIITTRSYDERLETLKHVREA--GINVCSG 238 (289)
Q Consensus 169 k~~-~---~~i~-~~~g~l~~e~l~~L~~aG--~~~v~i~let~-~~~~~~i~~~~~~~~~~~~i~~~~~~--Gi~v~~~ 238 (289)
... + +.+. .+...++++.++.|+++| +..+.+++||. +++++.++++++.+++.++++.+++. |+.+.++
T Consensus 234 ~~i~~l~~ir~~~~~p~~~~~ell~~m~~~g~~~~~l~lglQSgsd~iLk~m~R~~t~~~~~~~v~~lr~~~~~i~i~~~ 313 (502)
T PRK14326 234 GEIDGLERVRFTSPHPAEFTDDVIEAMAETPNVCPQLHMPLQSGSDRVLRAMRRSYRSERFLGILEKVRAAMPDAAITTD 313 (502)
T ss_pred HhcCCccEEEEeccChhhCCHHHHHHHHhcCCcCCcEEeccCCCCHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCeEEEE
Confidence 422 2 3332 223457999999999997 89999999999 99999999999999999999999996 7889999
Q ss_pred EEeec-CCCHHHHHHHHHHHhcCCCCCCeeeeccceecCCCCCCCCC
Q 022946 239 GIIGL-GEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQK 284 (289)
Q Consensus 239 ~i~Gl-get~ed~~~~l~~l~~l~~~~~~v~i~~~~p~pgTpl~~~~ 284 (289)
+|+|+ |||.+|+.++++++.++ +++.+.++.|.|.||||+++.+
T Consensus 314 ~IvGfPgET~edf~~Tl~~i~~~--~~~~~~~f~~sp~pGT~~~~~~ 358 (502)
T PRK14326 314 IIVGFPGETEEDFQATLDVVREA--RFSSAFTFQYSKRPGTPAAEME 358 (502)
T ss_pred EEEECCCCCHHHHHHHHHHHHHc--CCCEEEEEeecCCCCChHHhCc
Confidence 99999 99999999999999999 5888999999999999999865
No 44
>PLN02428 lipoic acid synthase
Probab=99.92 E-value=1.1e-23 Score=184.79 Aligned_cols=175 Identities=19% Similarity=0.341 Sum_probs=142.5
Q ss_pred EeeccccCCCCcCCCCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHHcCCcEEEEecccCCCCCCchhHHHHHHHHHHHH
Q 022946 90 TLLSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIR 169 (289)
Q Consensus 90 ~~i~~~t~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~~g~~~i~i~~~~~~~~ge~~~~~~l~e~i~~ik 169 (289)
+++.+ +++|+.+|.||+++... .+.+ ..++++.+.++.+.+.|+++++|++++.+.. .+...+.+.++++.++
T Consensus 104 T~mil-g~gCtr~CrFCav~~~~----~p~~-~d~~Ep~~vA~~v~~~Glk~vvltSg~rddl-~D~ga~~~~elir~Ir 176 (349)
T PLN02428 104 TIMIL-GDTCTRGCRFCAVKTSR----TPPP-PDPDEPENVAEAIASWGVDYVVLTSVDRDDL-PDGGSGHFAETVRRLK 176 (349)
T ss_pred EEEEe-cCCCCCCCCCCcCCCCC----CCCC-CChhhHHHHHHHHHHcCCCEEEEEEcCCCCC-CcccHHHHHHHHHHHH
Confidence 34444 99999999999997422 1222 5678888888888899999999988754332 2346678888888888
Q ss_pred hcC--ceEEE-eCC-CCCHHHHHHHHHcCCCeEecCCCchHHHHhccC-CCCCHHHHHHHHHHHHHc--CCceeecEEee
Q 022946 170 DMG--MEVCC-TLG-MLEKHQAIELKKAGLTAYNHNLDTSREFYSKII-TTRSYDERLETLKHVREA--GINVCSGGIIG 242 (289)
Q Consensus 170 ~~~--~~i~~-~~g-~l~~e~l~~L~~aG~~~v~i~let~~~~~~~i~-~~~~~~~~~~~i~~~~~~--Gi~v~~~~i~G 242 (289)
+.. +.+.. +.+ ..+++.++.|+++|++.+.+++|+.+++++.++ ++.+++++++.++.+++. |+.+.+++|+|
T Consensus 177 ~~~P~i~Ie~L~pdf~~d~elL~~L~eAG~d~i~hnlETv~rL~~~Ir~~~~sye~~Le~L~~ak~~~pGi~tkSg~MvG 256 (349)
T PLN02428 177 QLKPEILVEALVPDFRGDLGAVETVATSGLDVFAHNIETVERLQRIVRDPRAGYKQSLDVLKHAKESKPGLLTKTSIMLG 256 (349)
T ss_pred HhCCCcEEEEeCccccCCHHHHHHHHHcCCCEEccCccCcHHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeEEEe
Confidence 543 33333 233 348999999999999999999998888999999 678999999999999998 99999999999
Q ss_pred cCCCHHHHHHHHHHHhcCCCCCCeeeeccce
Q 022946 243 LGEAEEDRVGLLHTLATLPTHPESVPINALL 273 (289)
Q Consensus 243 lget~ed~~~~l~~l~~l~~~~~~v~i~~~~ 273 (289)
+|||++|+.+++++|+++ +++.+.|..|+
T Consensus 257 LGET~Edv~e~l~~Lrel--gvd~vtigqyL 285 (349)
T PLN02428 257 LGETDEEVVQTMEDLRAA--GVDVVTFGQYL 285 (349)
T ss_pred cCCCHHHHHHHHHHHHHc--CCCEEeecccc
Confidence 999999999999999999 68999987664
No 45
>PRK14335 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=99.92 E-value=5.7e-24 Score=196.18 Aligned_cols=191 Identities=15% Similarity=0.196 Sum_probs=153.1
Q ss_pred EeeccccCCCCcCCCCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHHcCCcEEEEecccCCCCCCch---hHHHHHHHHH
Q 022946 90 TLLSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKT---NFNQILEYVK 166 (289)
Q Consensus 90 ~~i~~~t~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~~g~~~i~i~~~~~~~~ge~~---~~~~l~e~i~ 166 (289)
.++.+ ++|||++|+||..+...+ +.+.+++++|+++++.+.+.|+++|.|.|...+.++... ....+.++++
T Consensus 154 ~~i~I-~rGC~~~CsfC~~p~~rG----~~rsr~~e~Vv~Ei~~l~~~G~~ei~l~g~~~~~y~~~~~~~~~~~~~~Ll~ 228 (455)
T PRK14335 154 SFIPI-MNGCNNFCSYCIVPYVRG----REISRDLDAILQEIDVLSEKGVREITLLGQNVNSYRGRDREGNIVTFPQLLR 228 (455)
T ss_pred EEEEh-hcCCCCCCCCCCcccCCC----CCccCCHHHHHHHHHHHHHCCCeEEEEEeecccccccccccCCccCHHHHHH
Confidence 55677 899999999999874332 233469999999999999999999999875443332111 1123445554
Q ss_pred HHH----h-cCceE----EEeCCCCCHHHHHHHHH--cCCCeEecCCCch-HHHHhccCCCCCHHHHHHHHHHHHHc--C
Q 022946 167 DIR----D-MGMEV----CCTLGMLEKHQAIELKK--AGLTAYNHNLDTS-REFYSKIITTRSYDERLETLKHVREA--G 232 (289)
Q Consensus 167 ~ik----~-~~~~i----~~~~g~l~~e~l~~L~~--aG~~~v~i~let~-~~~~~~i~~~~~~~~~~~~i~~~~~~--G 232 (289)
.+. . .++.. ...+..++++.++.|++ +|+..+.+++||+ +++++.++++.+.+++.++++.+++. |
T Consensus 229 ~l~~~~~~~~~i~~ir~~s~~p~~i~~ell~~m~~~~~gc~~l~iglQSgsd~vLk~m~R~~t~e~~~~~v~~ir~~~pg 308 (455)
T PRK14335 229 HIVRRAEVTDQIRWIRFMSSHPKDLSDDLIATIAQESRLCRLVHLPVQHGSNGVLKRMNRSYTREHYLSLVGKLKASIPN 308 (455)
T ss_pred HHHHhhcccCCceEEEEeecCcccCCHHHHHHHHhCCCCCCeEEEccCcCCHHHHHHcCCCCCHHHHHHHHHHHHHhCCC
Confidence 442 1 23332 12355689999999998 4899999999999 99999999999999999999999998 9
Q ss_pred CceeecEEeec-CCCHHHHHHHHHHHhcCCCCCCeeeeccceecCCCCCCCCC-CCC
Q 022946 233 INVCSGGIIGL-GEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQK-LKY 287 (289)
Q Consensus 233 i~v~~~~i~Gl-get~ed~~~~l~~l~~l~~~~~~v~i~~~~p~pgTpl~~~~-~~~ 287 (289)
+.+.+++|+|+ |||.+++.++++++.++ +++.+.++.|.|.||||+++.+ +++
T Consensus 309 i~i~~d~IvGfPgET~edf~~Tl~~i~~l--~~~~~~~~~~sp~pGT~~~~~~~~v~ 363 (455)
T PRK14335 309 VALSTDILIGFPGETEEDFEQTLDLMREV--EFDSAFMYHYNPREGTPAYDFPDRIP 363 (455)
T ss_pred CEEEEEEEEeCCCCCHHHHHHHHHHHHhc--CCCeEEEEEecCCCCCchhhCCCCCC
Confidence 99999999999 99999999999999999 6899999999999999999875 344
No 46
>PRK14330 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=99.92 E-value=6.2e-24 Score=195.34 Aligned_cols=186 Identities=15% Similarity=0.242 Sum_probs=148.5
Q ss_pred EeeccccCCCCcCCCCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHHcCCcEEEEecccCCCCCCch-hHHHHHHHHHHH
Q 022946 90 TLLSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKT-NFNQILEYVKDI 168 (289)
Q Consensus 90 ~~i~~~t~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~~g~~~i~i~~~~~~~~ge~~-~~~~l~e~i~~i 168 (289)
.++.+ ++|||++|.||..+...+ +.+..++++|+++++.+.+.|+++|+|.|...+.+|.+. ....+.++++.+
T Consensus 142 ~~v~i-~rGC~~~CsFC~ip~~~G----~~rsr~~e~Iv~Ei~~l~~~g~kei~l~~~n~~~yg~~~~~~~~l~~Ll~~~ 216 (434)
T PRK14330 142 AWVTI-IYGCNRFCTYCIVPYTRG----REKSRPMEDILEEVEKLAKQGYREVTFLGQNVDAYGKDLKDGSSLAKLLEEA 216 (434)
T ss_pred EEEEc-ccCCCCCCCCCceECcCC----CCccCCHHHHHHHHHHHHHCCCcEEEEEEecccccccCCCCCccHHHHHHHH
Confidence 45777 899999999999874322 235579999999999999999999999775433333211 112344444443
Q ss_pred Hhc-Cce-E-EE--eCCCCCHHHHHHHHHcC--CCeEecCCCch-HHHHhccCCCCCHHHHHHHHHHHHHc--CCceeec
Q 022946 169 RDM-GME-V-CC--TLGMLEKHQAIELKKAG--LTAYNHNLDTS-REFYSKIITTRSYDERLETLKHVREA--GINVCSG 238 (289)
Q Consensus 169 k~~-~~~-i-~~--~~g~l~~e~l~~L~~aG--~~~v~i~let~-~~~~~~i~~~~~~~~~~~~i~~~~~~--Gi~v~~~ 238 (289)
.+. ++. + .. .+..++++.++.|+++| +.++.+++||. +++++.++++.+.+++.++++.+++. |+.+.++
T Consensus 217 ~~~~~~~~~~~~~~~p~~~~~ell~~l~~~~~~~~~l~iglQSgsd~vLk~M~R~~~~~~~~~~i~~lr~~~~~i~i~~d 296 (434)
T PRK14330 217 SKIEGIERIWFLTSYPTDFSDELIEVIANSPKVAKSIHLPVQSGSNRILKLMNRRYTREEYLELIEKIRSKVPDASISSD 296 (434)
T ss_pred HhcCCceEEEEecCChhhcCHHHHHHHhcCCcccCceecCcCCCCHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCEEEEE
Confidence 321 222 1 11 23457899999999988 78999999999 99999999999999999999999996 7889999
Q ss_pred EEeec-CCCHHHHHHHHHHHhcCCCCCCeeeeccceecCCCCCCC
Q 022946 239 GIIGL-GEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQD 282 (289)
Q Consensus 239 ~i~Gl-get~ed~~~~l~~l~~l~~~~~~v~i~~~~p~pgTpl~~ 282 (289)
+|+|+ |||.+++.++++++.++ +++.+.++.|.|.||||+++
T Consensus 297 ~IvGfPgET~edf~~tl~fi~~~--~~~~~~~~~~sp~pGT~~~~ 339 (434)
T PRK14330 297 IIVGFPTETEEDFMETVDLVEKA--QFERLNLAIYSPREGTVAWK 339 (434)
T ss_pred EEEECCCCCHHHHHHHHHHHHhc--CCCEEeeeeccCCCCChhhh
Confidence 99999 99999999999999999 68999999999999999988
No 47
>PRK14328 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=99.92 E-value=5.3e-24 Score=195.95 Aligned_cols=189 Identities=14% Similarity=0.245 Sum_probs=151.6
Q ss_pred eEeeccccCCCCcCCCCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHHcCCcEEEEecccCCCCCCchh-HHHHHHHHHH
Q 022946 89 CTLLSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTN-FNQILEYVKD 167 (289)
Q Consensus 89 ~~~i~~~t~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~~g~~~i~i~~~~~~~~ge~~~-~~~l~e~i~~ 167 (289)
..++.+ ++|||++|.||..+...+ +.+..++++|+++++.+.+.|+++|.|.|.....+|.+.. ...+.++++.
T Consensus 148 ~~~i~i-~rGC~~~CsfC~~p~~~g----~~Rsr~~e~Iv~Ei~~l~~~G~~ei~l~~~~~~~yg~d~~~~~~l~~Ll~~ 222 (439)
T PRK14328 148 KAFVTI-MYGCNNFCTYCIVPYVRG----RERSRKPEDIIAEIKELVSEGYKEVTLLGQNVNSYGKDLEEKIDFADLLRR 222 (439)
T ss_pred EEEEEH-HhCcCCCCCCCCcccccC----CcccCCHHHHHHHHHHHHHCCCcEEEEeccccCcCCcCCCCCcCHHHHHHH
Confidence 356787 999999999999874332 2344699999999999999999999998865444442110 0124444444
Q ss_pred HHhc-C---ceEE-EeCCCCCHHHHHHHHHcC--CCeEecCCCch-HHHHhccCCCCCHHHHHHHHHHHHHc--CCceee
Q 022946 168 IRDM-G---MEVC-CTLGMLEKHQAIELKKAG--LTAYNHNLDTS-REFYSKIITTRSYDERLETLKHVREA--GINVCS 237 (289)
Q Consensus 168 ik~~-~---~~i~-~~~g~l~~e~l~~L~~aG--~~~v~i~let~-~~~~~~i~~~~~~~~~~~~i~~~~~~--Gi~v~~ 237 (289)
+.+. + +.+. .++..++++.++.|+++| +.++.+++||+ +++++.++++++.++++++++.+++. |+.+.+
T Consensus 223 l~~~~~~~~ir~~~~~P~~i~~ell~~l~~~~~~~~~l~iglQSgsd~vLk~M~R~~~~~~~~~~i~~lr~~~~~i~i~~ 302 (439)
T PRK14328 223 VNEIDGLERIRFMTSHPKDLSDDLIEAIADCDKVCEHIHLPVQSGSNRILKKMNRHYTREYYLELVEKIKSNIPDVAITT 302 (439)
T ss_pred HHhcCCCcEEEEecCChhhcCHHHHHHHHhCCCcCceeeeCCCcCCHHHHHhCCCCCCHHHHHHHHHHHHHhCCCCEEEE
Confidence 4322 2 3332 234558999999999986 89999999999 99999999999999999999999997 677889
Q ss_pred cEEeec-CCCHHHHHHHHHHHhcCCCCCCeeeeccceecCCCCCCCCC
Q 022946 238 GGIIGL-GEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQK 284 (289)
Q Consensus 238 ~~i~Gl-get~ed~~~~l~~l~~l~~~~~~v~i~~~~p~pgTpl~~~~ 284 (289)
++|+|+ |||.+|+.++++++.++ +++.+.++.|.|.||||++..+
T Consensus 303 d~IvG~PgET~ed~~~tl~~i~~l--~~~~~~~~~~sp~pGT~~~~~~ 348 (439)
T PRK14328 303 DIIVGFPGETEEDFEETLDLVKEV--RYDSAFTFIYSKRKGTPAAKME 348 (439)
T ss_pred EEEEECCCCCHHHHHHHHHHHHhc--CCCcccceEecCCCCChhhhCC
Confidence 999999 99999999999999999 6889999999999999999764
No 48
>PRK14329 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=99.92 E-value=6.5e-24 Score=196.27 Aligned_cols=186 Identities=11% Similarity=0.132 Sum_probs=149.5
Q ss_pred EeeccccCCCCcCCCCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHHcCCcEEEEecccCCCCCCc--h----hHHHHHH
Q 022946 90 TLLSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRK--T----NFNQILE 163 (289)
Q Consensus 90 ~~i~~~t~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~~g~~~i~i~~~~~~~~ge~--~----~~~~l~e 163 (289)
..+.+ ++|||++|+||..+... .+++..++++|+++++.+.+.|+++|.|.|...+.++-. . ....+.+
T Consensus 170 a~i~i-srGCp~~CsFC~ip~~~----G~~rsrs~e~Vv~Ei~~l~~~g~~eI~l~~~~~~~y~~d~~~~~~~~~~~l~~ 244 (467)
T PRK14329 170 AFVSI-MRGCDNMCTFCVVPFTR----GRERSRDPESILNEVRDLFAKGYKEVTLLGQNVDSYLWYGGGLKKDEAVNFAQ 244 (467)
T ss_pred EEEEe-ccCcccCCCCCcccccc----CCcccCCHHHHHHHHHHHHHCCCeEEEEEeecccccccccCCccccccccHHH
Confidence 46777 99999999999987432 234557999999999999999999999977442222211 0 1124555
Q ss_pred HHHHHHhc----CceEEE-eCCCCCHHHHHHHHHc--CCCeEecCCCch-HHHHhccCCCCCHHHHHHHHHHHHHc--CC
Q 022946 164 YVKDIRDM----GMEVCC-TLGMLEKHQAIELKKA--GLTAYNHNLDTS-REFYSKIITTRSYDERLETLKHVREA--GI 233 (289)
Q Consensus 164 ~i~~ik~~----~~~i~~-~~g~l~~e~l~~L~~a--G~~~v~i~let~-~~~~~~i~~~~~~~~~~~~i~~~~~~--Gi 233 (289)
+++.+.+. .+.+.+ +...++++.++.|+++ |+..+.+++||+ +++++.++++.+.+++.++++.+++. ++
T Consensus 245 Ll~~l~~~~~~~~ir~~~~~p~~l~~ell~~m~~~~~g~~~i~iglQSgsd~vLk~m~R~~t~~~~~~~i~~ir~~~~~~ 324 (467)
T PRK14329 245 LLEMVAEAVPDMRIRFSTSHPKDMTDDVLEVMAKYDNICKHIHLPVQSGSDRILKLMNRKYTREWYLDRIDAIRRIIPDC 324 (467)
T ss_pred HHHHHHhcCCCcEEEEecCCcccCCHHHHHHHHhCCCCCCeEEeCCCcCCHHHHHhcCCCCCHHHHHHHHHHHHHhCCCC
Confidence 55555422 333332 2445889999999997 899999999999 99999999999999999999999996 56
Q ss_pred ceeecEEeec-CCCHHHHHHHHHHHhcCCCCCCeeeeccceecCCCCCCC
Q 022946 234 NVCSGGIIGL-GEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQD 282 (289)
Q Consensus 234 ~v~~~~i~Gl-get~ed~~~~l~~l~~l~~~~~~v~i~~~~p~pgTpl~~ 282 (289)
.+.+++|+|+ |||.+|+.++++++.++ +++.+.++.|.|.||||++.
T Consensus 325 ~i~~d~IvGfPgET~edf~~tl~~i~~l--~~~~~~v~~~sp~pGT~~~~ 372 (467)
T PRK14329 325 GISTDMIAGFPTETEEDHQDTLSLMEEV--GYDFAFMFKYSERPGTYAAR 372 (467)
T ss_pred EEEEeEEEeCCCCCHHHHHHHHHHHHhh--CCCeEeeeEecCCCCChhhh
Confidence 7889999999 99999999999999999 68999999999999999985
No 49
>PRK14336 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=99.92 E-value=9.9e-24 Score=192.63 Aligned_cols=187 Identities=13% Similarity=0.178 Sum_probs=152.7
Q ss_pred eEeeccccCCCCcCCCCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHHcCCcEEEEecccCCCCCCch-hHHHHHHHHHH
Q 022946 89 CTLLSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKT-NFNQILEYVKD 167 (289)
Q Consensus 89 ~~~i~~~t~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~~g~~~i~i~~~~~~~~ge~~-~~~~l~e~i~~ 167 (289)
...+.+ ++|||++|+||..+...+ +.+.+++++|+++++.+.+.|+++|.|.|...+.+|.+. ....+.++++.
T Consensus 125 ~a~i~i-~rGC~~~CsFC~ip~~rG----~~rsrs~e~Iv~Ei~~l~~~G~~ei~l~~~~~~~yg~d~~~~~~l~~Ll~~ 199 (418)
T PRK14336 125 SANVTI-MQGCDNFCTYCVVPYRRG----REKSRSIAEIGCEVAELVRRGSREVVLLGQNVDSYGHDLPEKPCLADLLSA 199 (418)
T ss_pred EEEEEe-ccCCCCCCccCCccccCC----CCccCCHHHHHHHHHHHHHCCCeEEEEEecCccccccCCCCcccHHHHHHH
Confidence 456777 999999999998874322 345579999999999999999999999876544444321 12345556655
Q ss_pred HHhc----CceEEE-eCCCCCHHHHHHHHHc--CCCeEecCCCch-HHHHhccCCCCCHHHHHHHHHHHHHc--CCceee
Q 022946 168 IRDM----GMEVCC-TLGMLEKHQAIELKKA--GLTAYNHNLDTS-REFYSKIITTRSYDERLETLKHVREA--GINVCS 237 (289)
Q Consensus 168 ik~~----~~~i~~-~~g~l~~e~l~~L~~a--G~~~v~i~let~-~~~~~~i~~~~~~~~~~~~i~~~~~~--Gi~v~~ 237 (289)
+.+. .+.+.. ++..++++.++.|+++ ++..+.+++||+ +++++.++++++.+++.++++.+++. |+.+.+
T Consensus 200 l~~~~~~~~ir~~~~~p~~i~~ell~~l~~~~~~~~~l~lglQSgsd~vLk~M~R~~~~~~~~~~i~~lr~~~pgi~i~~ 279 (418)
T PRK14336 200 LHDIPGLLRIRFLTSHPKDISQKLIDAMAHLPKVCRSLSLPVQAGDDTILAAMRRGYTNQQYRELVERLKTAMPDISLQT 279 (418)
T ss_pred HHhcCCccEEEEeccChhhcCHHHHHHHHhcCccCCceecCCCcCCHHHHHHhCCCCCHHHHHHHHHHHHhhCCCCEEEE
Confidence 5532 233322 2445789999999985 599999999999 99999999999999999999999998 999999
Q ss_pred cEEeec-CCCHHHHHHHHHHHhcCCCCCCeeeeccceecCCCCCCC
Q 022946 238 GGIIGL-GEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQD 282 (289)
Q Consensus 238 ~~i~Gl-get~ed~~~~l~~l~~l~~~~~~v~i~~~~p~pgTpl~~ 282 (289)
++|+|+ |||.+++.++++++.++ +++.+.++.|.|.||||++.
T Consensus 280 d~IvGfPGET~edf~~tl~fi~~~--~~~~~~v~~ysp~pGT~a~~ 323 (418)
T PRK14336 280 DLIVGFPSETEEQFNQSYKLMADI--GYDAIHVAAYSPRPQTVAAR 323 (418)
T ss_pred EEEEECCCCCHHHHHHHHHHHHhc--CCCEEEeeecCCCCCChhHh
Confidence 999999 99999999999999999 68999999999999999985
No 50
>TIGR01574 miaB-methiolase tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB. Hits to this model span all major groups of bacteria and eukaryotes, but not archaea, which are known to lack this particular tRNA modification. The enzyme from Thermotoga maritima has been cloned, expressed, spectroscopically characterized and shown to complement the E. coli MiaB enzyme.
Probab=99.92 E-value=8.6e-24 Score=194.49 Aligned_cols=190 Identities=17% Similarity=0.242 Sum_probs=154.0
Q ss_pred eEeeccccCCCCcCCCCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHHcCCcEEEEecccCCCC-CCch--hHHHHHHHH
Q 022946 89 CTLLSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTI-GRKT--NFNQILEYV 165 (289)
Q Consensus 89 ~~~i~~~t~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~~g~~~i~i~~~~~~~~-ge~~--~~~~l~e~i 165 (289)
..++++ ++||+++|+||..+...+ +.+.+++++|+++++.+.+.|+++|+|.|...+.+ |.+. ....+.+++
T Consensus 146 ~~~v~i-~rGC~~~CsfC~~~~~~G----~~rsr~~e~I~~Ei~~l~~~g~~ei~l~~~~~~~y~g~d~~~~~~~l~~Ll 220 (438)
T TIGR01574 146 KSFINI-MIGCNKFCTYCIVPYTRG----DEISRPFDDILQEVQKLAEKGVREITLLGQNVNAYRGKDFEGKTMDFSDLL 220 (438)
T ss_pred eEEeeh-hcCCCCCCCCCCeeeecC----CCcccCHHHHHHHHHHHHHcCCeEEEEEecccCCccCCCCCCCcccHHHHH
Confidence 456787 999999999999874322 23457999999999999999999999987544433 3211 112355556
Q ss_pred HHHHh-cCce-EE---EeCCCCCHHHHHHHHHcC--CCeEecCCCch-HHHHhccCCCCCHHHHHHHHHHHHHc--CCce
Q 022946 166 KDIRD-MGME-VC---CTLGMLEKHQAIELKKAG--LTAYNHNLDTS-REFYSKIITTRSYDERLETLKHVREA--GINV 235 (289)
Q Consensus 166 ~~ik~-~~~~-i~---~~~g~l~~e~l~~L~~aG--~~~v~i~let~-~~~~~~i~~~~~~~~~~~~i~~~~~~--Gi~v 235 (289)
+.+.+ .++. +. .++..++++.++.|+++| +.++.+++||+ +++++.++++++.++++++++.+++. |+.+
T Consensus 221 ~~l~~~~~~~~ir~~~~~p~~l~~ell~~l~~~g~~~~~l~iglQSgsd~vLk~m~R~~t~~~~~~~v~~ir~~~~~i~i 300 (438)
T TIGR01574 221 RELSTIDGIERIRFTSSHPLDFDDDLIEVFANNPKLCKSMHLPVQSGSSEILKLMKRGYTREWYLNLVRKLRAACPNVSI 300 (438)
T ss_pred HHHHhcCCceEEEEecCCcccCCHHHHHHHHhCCCccCceeeCCCcCCHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCeE
Confidence 55542 2332 21 234568999999999999 99999999999 99999999999999999999999997 7788
Q ss_pred eecEEeec-CCCHHHHHHHHHHHhcCCCCCCeeeeccceecCCCCCCCCCC
Q 022946 236 CSGGIIGL-GEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQKL 285 (289)
Q Consensus 236 ~~~~i~Gl-get~ed~~~~l~~l~~l~~~~~~v~i~~~~p~pgTpl~~~~~ 285 (289)
.+++|+|+ |||++|+.++++++.++ +++.+.++.|.|.||||+++.+.
T Consensus 301 ~~d~IvG~PgEt~ed~~~tl~~i~~~--~~~~~~~~~~sp~pGT~~~~~~~ 349 (438)
T TIGR01574 301 STDIIVGFPGETEEDFEETLDLLREV--EFDSAFSFIYSPRPGTPAADMPD 349 (438)
T ss_pred eeCEEEeCCCCCHHHHHHHHHHHHhc--CCCeeeeEEecCCCCCchhhCCC
Confidence 99999999 99999999999999999 68999999999999999998753
No 51
>PRK08207 coproporphyrinogen III oxidase; Provisional
Probab=99.92 E-value=2.4e-23 Score=192.29 Aligned_cols=225 Identities=21% Similarity=0.252 Sum_probs=161.6
Q ss_pred CCCCHHHHHHhhC------CChHHHHHHHHHHHHhhhC-CCeeEEeEeeccccCCCCcCCCCCCCCCCCCCCCCCcCCCC
Q 022946 51 HDWSKDDIKSIYD------SPVLDLLFHGAQVHRHAHN-FREVQQCTLLSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMT 123 (289)
Q Consensus 51 ~~ls~ee~~~l~~------~~~~~l~~~a~~~~r~~~~-g~~~~~~~~i~~~t~~C~~~C~fC~~~~~~~~~~~~~~~~~ 123 (289)
.++|.+|+...+. .+-.+|+...++..+.... ...-.+..+|. .+.||.+|.||+++.....+........
T Consensus 120 ~g~~~~~~~~~~~~~y~~~~~k~~l~~~~~~~~~~~~~~~~~~~~sLYih--IPFC~~~C~YCsf~s~~~~~~~~~~~~Y 197 (488)
T PRK08207 120 EGLSKEEIHKELKEEYLISEEKAKLLLEIAKRELSFLLYRDKNEVSIYIG--IPFCPTRCLYCSFPSYPIKGYKGLVEPY 197 (488)
T ss_pred cCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhccCCCCceEEEEe--cCCCCCcCCCCCCccccCCCCcchHHHH
Confidence 4788999887664 2346677777776666652 11122333344 5799999999998753211111100012
Q ss_pred HHHHHHHHHHHHH------cCCcEEEEecccCCCCCCchhHHHHHHHHHHHHh-c----Cc-eEEE---eCCCCCHHHHH
Q 022946 124 KDAVMQAAQKAKE------AGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRD-M----GM-EVCC---TLGMLEKHQAI 188 (289)
Q Consensus 124 ~eei~~~~~~~~~------~g~~~i~i~~~~~~~~ge~~~~~~l~e~i~~ik~-~----~~-~i~~---~~g~l~~e~l~ 188 (289)
.+.++++++.... .++..|.|+||.. +.- ..+++.++++.+++ . ++ ++.+ ++..++++.++
T Consensus 198 ~~aL~~EI~~~~~~~~~~~~~v~tIyfGGGTP-t~L---~~~~L~~Ll~~i~~~f~~~~~~~EiTvE~grPd~it~e~L~ 273 (488)
T PRK08207 198 LEALHYEIEEIGKYLKEKGLKITTIYFGGGTP-TSL---TAEELERLLEEIYENFPDVKNVKEFTVEAGRPDTITEEKLE 273 (488)
T ss_pred HHHHHHHHHHHHhhhcccCCceeEEEEeCCCc-cCC---CHHHHHHHHHHHHHhccccCCceEEEEEcCCCCCCCHHHHH
Confidence 3555555554422 1456677776432 222 23445555544442 1 23 3433 34579999999
Q ss_pred HHHHcCCCeEecCCCch-HHHHhccCCCCCHHHHHHHHHHHHHcCC-ceeecEEeec-CCCHHHHHHHHHHHhcCCCCCC
Q 022946 189 ELKKAGLTAYNHNLDTS-REFYSKIITTRSYDERLETLKHVREAGI-NVCSGGIIGL-GEAEEDRVGLLHTLATLPTHPE 265 (289)
Q Consensus 189 ~L~~aG~~~v~i~let~-~~~~~~i~~~~~~~~~~~~i~~~~~~Gi-~v~~~~i~Gl-get~ed~~~~l~~l~~l~~~~~ 265 (289)
.|+++|+++|++|+||+ +++++.+.+.+++++++++++.++++|+ .+++++|+|+ |||.+++.++++++.++ +++
T Consensus 274 ~Lk~~Gv~RISIGvQS~~d~vLk~igR~ht~e~v~~ai~~ar~~Gf~~In~DLI~GLPgEt~ed~~~tl~~l~~L--~pd 351 (488)
T PRK08207 274 VLKKYGVDRISINPQTMNDETLKAIGRHHTVEDIIEKFHLAREMGFDNINMDLIIGLPGEGLEEVKHTLEEIEKL--NPE 351 (488)
T ss_pred HHHhcCCCeEEEcCCcCCHHHHHHhCCCCCHHHHHHHHHHHHhCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhc--CcC
Confidence 99999999999999999 9999999999999999999999999999 6999999999 99999999999999999 699
Q ss_pred eeeeccceecCCCCCCCC
Q 022946 266 SVPINALLAVKGTPLQDQ 283 (289)
Q Consensus 266 ~v~i~~~~p~pgTpl~~~ 283 (289)
.+.++.+.|.|||+|+..
T Consensus 352 ~isv~~L~i~~gT~l~~~ 369 (488)
T PRK08207 352 SLTVHTLAIKRASRLTEN 369 (488)
T ss_pred EEEEEeceEcCCChHHHh
Confidence 999999999999999853
No 52
>PRK14332 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=99.92 E-value=1.2e-23 Score=193.31 Aligned_cols=185 Identities=14% Similarity=0.214 Sum_probs=152.1
Q ss_pred eEeeccccCCCCcCCCCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHHcCCcEEEEecccCCCCCCchhHHHHHHHHHHH
Q 022946 89 CTLLSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDI 168 (289)
Q Consensus 89 ~~~i~~~t~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~~g~~~i~i~~~~~~~~ge~~~~~~l~e~i~~i 168 (289)
.+++.+ ++|||++|+||..+... .+.+.+++|+|+++++.+.+.|+++|.|.|...+.+|.. ...+.++++.+
T Consensus 155 ~a~l~i-srGC~~~CsFC~ip~~r----G~~rsr~~e~Iv~Ei~~l~~~G~kei~l~~~~~~~y~~~--~~~l~~Ll~~l 227 (449)
T PRK14332 155 QAFVTI-MRGCNNFCTFCVVPYTR----GRERSRDPKSIVREIQDLQEKGIRQVTLLGQNVNSYKEQ--STDFAGLIQML 227 (449)
T ss_pred eEEEEe-cCCcCCCCCCCCccccc----CCcccCCHHHHHHHHHHHHHCCCeEEEEecccCCcccCC--cccHHHHHHHH
Confidence 356777 99999999999987432 234557999999999999999999999988665554432 12456666655
Q ss_pred Hhc-C---ceEEE-eCCCCCHHHHHHHHHcC--CCeEecCCCch-HHHHhccCCCCCHHHHHHHHHHHHHc--CCceeec
Q 022946 169 RDM-G---MEVCC-TLGMLEKHQAIELKKAG--LTAYNHNLDTS-REFYSKIITTRSYDERLETLKHVREA--GINVCSG 238 (289)
Q Consensus 169 k~~-~---~~i~~-~~g~l~~e~l~~L~~aG--~~~v~i~let~-~~~~~~i~~~~~~~~~~~~i~~~~~~--Gi~v~~~ 238 (289)
.+. + +.+.. ++..++++.++.|+++| +..+.+++||+ +++++.++++++.+++.++++.+++. |+.+.++
T Consensus 228 ~~~~~~~~ir~~~~~p~~~~~ell~~m~~~~~~~~~l~lgvQSgsd~vLk~m~R~~t~~~~~~~i~~lr~~~p~i~i~td 307 (449)
T PRK14332 228 LDETTIERIRFTSPHPKDFPDHLLSLMAKNPRFCPNIHLPLQAGNTRVLEEMKRSYSKEEFLDVVKEIRNIVPDVGITTD 307 (449)
T ss_pred hcCCCcceEEEECCCcccCCHHHHHHHHhCCCccceEEECCCcCCHHHHHhhCCCCCHHHHHHHHHHHHHhCCCCEEEEE
Confidence 422 2 22322 23457899999999998 89999999999 99999999999999999999999997 6778899
Q ss_pred EEeec-CCCHHHHHHHHHHHhcCCCCCCeeeeccceecCCCCCCC
Q 022946 239 GIIGL-GEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQD 282 (289)
Q Consensus 239 ~i~Gl-get~ed~~~~l~~l~~l~~~~~~v~i~~~~p~pgTpl~~ 282 (289)
+|+|+ |||++|+.++++++.++ +++.+.++.|.|.||||.+.
T Consensus 308 ~IvGfPgET~edf~~tl~~v~~l--~~~~~~~f~ys~~~GT~a~~ 350 (449)
T PRK14332 308 IIVGFPNETEEEFEDTLAVVREV--QFDMAFMFKYSEREGTMAKR 350 (449)
T ss_pred EEeeCCCCCHHHHHHHHHHHHhC--CCCEEEEEEecCCCCChhHH
Confidence 99999 99999999999999999 68999999999999999983
No 53
>PRK14862 rimO ribosomal protein S12 methylthiotransferase; Provisional
Probab=99.92 E-value=2.6e-23 Score=191.05 Aligned_cols=187 Identities=19% Similarity=0.246 Sum_probs=150.0
Q ss_pred EeeccccCCCCcCCCCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHHcCCcEEEEecccCCCCCCc-----------hhH
Q 022946 90 TLLSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRK-----------TNF 158 (289)
Q Consensus 90 ~~i~~~t~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~~g~~~i~i~~~~~~~~ge~-----------~~~ 158 (289)
..+.+ ++|||++|+||..+..++ +.+..++++|+++++.+.+.|+++|.|.+.+.+.+|.+ ...
T Consensus 141 a~v~i-srGCp~~CsFC~ip~~~G----~~rsr~~e~Vv~Ei~~l~~~g~kei~l~~~d~~~yg~d~~~~~~~~~~~~~~ 215 (440)
T PRK14862 141 AYLKI-SEGCNHRCTFCIIPSMRG----DLVSRPIGDVLREAERLVKAGVKELLVISQDTSAYGVDVKYRTGFWNGRPVK 215 (440)
T ss_pred EEEEe-ccCCCCCCccCCcccccC----CccccCHHHHHHHHHHHHHCCCceEEEEecChhhhccccccccccccccchh
Confidence 45676 999999999999875432 34557999999999999999999999886443223211 013
Q ss_pred HHHHHHHHHHHhcCceEE---EeCCCCCHHHHHHHHHcCCC--eEecCCCch-HHHHhccCCCCCHHHHHHHHHHHHHc-
Q 022946 159 NQILEYVKDIRDMGMEVC---CTLGMLEKHQAIELKKAGLT--AYNHNLDTS-REFYSKIITTRSYDERLETLKHVREA- 231 (289)
Q Consensus 159 ~~l~e~i~~ik~~~~~i~---~~~g~l~~e~l~~L~~aG~~--~v~i~let~-~~~~~~i~~~~~~~~~~~~i~~~~~~- 231 (289)
.++.++++.+.+.++.+. ..+..++++.++.|++ |+. .+.+++||. +++++.++++.++++.++.++.+++.
T Consensus 216 ~~~~~Ll~~l~~~~~~~r~~~~~p~~~~dell~~m~~-g~~~~~l~IglESgs~~vLk~m~r~~~~~~~~~~i~~lr~~~ 294 (440)
T PRK14862 216 TRMTDLCEALGELGAWVRLHYVYPYPHVDEVIPLMAE-GKILPYLDIPFQHASPRVLKRMKRPASVEKTLERIKKWREIC 294 (440)
T ss_pred hHHHHHHHHHHhcCCEEEEecCCCCcCCHHHHHHHhc-CCCccccccccccCCHHHHHhcCCCCCHHHHHHHHHHHHHHC
Confidence 567777777775555222 1222367899999999 654 788899999 99999999999999999999999995
Q ss_pred -CCceeecEEeec-CCCHHHHHHHHHHHhcCCCCCCeeeeccceecCCCCCCCCC
Q 022946 232 -GINVCSGGIIGL-GEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQK 284 (289)
Q Consensus 232 -Gi~v~~~~i~Gl-get~ed~~~~l~~l~~l~~~~~~v~i~~~~p~pgTpl~~~~ 284 (289)
|+.+.+++|+|+ |||.+++.++++++.++ +++.+.++.|.|.||||.+..+
T Consensus 295 ~~i~i~t~~IvGfPgET~edf~~tl~fi~e~--~~d~~~~f~ysP~pGT~a~~~~ 347 (440)
T PRK14862 295 PDLTIRSTFIVGFPGETEEDFQMLLDFLKEA--QLDRVGCFKYSPVEGATANDLP 347 (440)
T ss_pred CCceecccEEEECCCCCHHHHHHHHHHHHHc--CCCeeeeEeecCCCCCchhhCC
Confidence 788899999999 99999999999999999 6899999999999999987543
No 54
>PRK14334 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=99.91 E-value=2.1e-23 Score=191.88 Aligned_cols=190 Identities=17% Similarity=0.245 Sum_probs=150.6
Q ss_pred EeEeeccccCCCCcCCCCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHHcCCcEEEEecccCCCCCC-chhHHHHHHHHH
Q 022946 88 QCTLLSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGR-KTNFNQILEYVK 166 (289)
Q Consensus 88 ~~~~i~~~t~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~~g~~~i~i~~~~~~~~ge-~~~~~~l~e~i~ 166 (289)
...++.+ ++|||++|.||..+...+ +.+..++++|+++++.+.+.|+++|.|.|...+.+|. +.....+.++++
T Consensus 138 ~~~~l~i-srGC~~~CsfC~~p~~~g----~~~sr~~e~Iv~Ei~~l~~~G~keI~l~g~~~~~yG~d~~~~~~~~~Ll~ 212 (440)
T PRK14334 138 LSAHLTI-MRGCNHHCTYCIVPTTRG----PEVSRHPDLILRELELLKAAGVQEVTLLGQNVNSYGVDQPGFPSFAELLR 212 (440)
T ss_pred eEEEEEe-ccCCCCCCcCCCcchhcC----CCccCCHHHHHHHHHHHHHCCCeEEEEEeccccccccCCCCcCCHHHHHH
Confidence 3456777 999999999999875322 2234699999999999999999999998744332322 112223444444
Q ss_pred HHHhcCc---eEEE-eCCCCCHHHHHHHHHc--CCCeEecCCCch-HHHHhccCCCCCHHHHHHHHHHHHHcCCc--eee
Q 022946 167 DIRDMGM---EVCC-TLGMLEKHQAIELKKA--GLTAYNHNLDTS-REFYSKIITTRSYDERLETLKHVREAGIN--VCS 237 (289)
Q Consensus 167 ~ik~~~~---~i~~-~~g~l~~e~l~~L~~a--G~~~v~i~let~-~~~~~~i~~~~~~~~~~~~i~~~~~~Gi~--v~~ 237 (289)
.+.+.++ .+.. +...++++.++.|+++ |+.++.+++||+ +++++.++++++.++++++++.++++|.. +++
T Consensus 213 ~l~~~~i~~ir~~~~~p~~i~~ell~~l~~~~~g~~~l~igvQSgs~~vLk~m~R~~~~~~~~~~v~~lr~~~~~i~i~~ 292 (440)
T PRK14334 213 LVGASGIPRVKFTTSHPMNFTDDVIAAMAETPAVCEYIHLPVQSGSDRVLRRMAREYRREKYLERIAEIREALPDVVLST 292 (440)
T ss_pred HHHhcCCcEEEEccCCcccCCHHHHHHHHhcCcCCCeEEeccccCCHHHHHHhCCCCCHHHHHHHHHHHHHhCCCcEEEE
Confidence 4443343 3322 2445899999999995 599999999999 99999999999999999999999999764 788
Q ss_pred cEEeec-CCCHHHHHHHHHHHhcCCCCCCeeeeccceecCCCCCCCCC
Q 022946 238 GGIIGL-GEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQK 284 (289)
Q Consensus 238 ~~i~Gl-get~ed~~~~l~~l~~l~~~~~~v~i~~~~p~pgTpl~~~~ 284 (289)
++|+|+ |||.+|+.++++++.++ +++.+.++.|.|.||||++..+
T Consensus 293 d~IvG~PgEt~ed~~~tl~~i~~l--~~~~i~~f~ysp~pGT~~~~~~ 338 (440)
T PRK14334 293 DIIVGFPGETEEDFQETLSLYDEV--GYDSAYMFIYSPRPGTPSYKHF 338 (440)
T ss_pred eEEEECCCCCHHHHHHHHHHHHhc--CCCEeeeeEeeCCCCChhHhcc
Confidence 999999 99999999999999999 6899999999999999998753
No 55
>PRK14337 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=99.91 E-value=2.7e-23 Score=191.37 Aligned_cols=192 Identities=16% Similarity=0.198 Sum_probs=153.2
Q ss_pred eEeeccccCCCCcCCCCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHHcCCcEEEEecccCCCCCCch--hHHHHHHHHH
Q 022946 89 CTLLSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKT--NFNQILEYVK 166 (289)
Q Consensus 89 ~~~i~~~t~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~~g~~~i~i~~~~~~~~ge~~--~~~~l~e~i~ 166 (289)
...+.+ ++|||++|+||..+... .+.+..++++|+++++.+.+.|+++|.|.+...+.+|.+. ....+.++++
T Consensus 149 ~a~v~i-~rGC~~~CsFC~ip~~r----G~~rsr~~e~Iv~Ei~~l~~~G~~eI~l~~~~~~~yg~d~~~~~~~l~~Ll~ 223 (446)
T PRK14337 149 SAFVNI-MQGCDNFCAYCIVPYTR----GRQKSRSSAAVLDECRALVDRGAREITLLGQNVNSYGQDKHGDGTSFAQLLH 223 (446)
T ss_pred EEEEEe-ccCCCCCCcCCCcccCC----CCCeeCCHHHHHHHHHHHHHCCCeEEEEEecCccccccCCCCCCccHHHHHH
Confidence 456777 89999999999886432 2334579999999999999999999999875443333221 0123455555
Q ss_pred HHHhc-C---ceEE-EeCCCCCHHHHHHHHHc--CCCeEecCCCch-HHHHhccCCCCCHHHHHHHHHHHHHc--CCcee
Q 022946 167 DIRDM-G---MEVC-CTLGMLEKHQAIELKKA--GLTAYNHNLDTS-REFYSKIITTRSYDERLETLKHVREA--GINVC 236 (289)
Q Consensus 167 ~ik~~-~---~~i~-~~~g~l~~e~l~~L~~a--G~~~v~i~let~-~~~~~~i~~~~~~~~~~~~i~~~~~~--Gi~v~ 236 (289)
.+.+. + +.+. .+...++++.++.|+++ |+.++.+++||+ +++++.++++++.+++.++++.+++. |+.+.
T Consensus 224 ~l~~~~g~~~ir~~~~~p~~i~~ell~~l~~~~~~~~~l~iglQSgsd~vLk~M~R~~t~e~~~~~v~~lr~~~~~i~i~ 303 (446)
T PRK14337 224 KVAALPGLERLRFTTPHPKDIAPEVIEAFGELPNLCPRLHLPLQSGSDRILKAMGRKYDMARYLDIVTDLRAARPDIALT 303 (446)
T ss_pred HHHhcCCCcEEEEccCCcccCCHHHHHHHHhCCcccCeEEECCCCCCHHHHHhCCCCCCHHHHHHHHHHHHHhCCCCeEE
Confidence 54432 2 3332 23445789999999984 689999999999 99999999999999999999999997 68899
Q ss_pred ecEEeec-CCCHHHHHHHHHHHhcCCCCCCeeeeccceecCCCCCCCCC-CCC
Q 022946 237 SGGIIGL-GEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQK-LKY 287 (289)
Q Consensus 237 ~~~i~Gl-get~ed~~~~l~~l~~l~~~~~~v~i~~~~p~pgTpl~~~~-~~~ 287 (289)
+++|+|+ |||.+|+.++++++.++ +++.+.++.|.|.||||.+..+ +++
T Consensus 304 ~d~IvG~PgET~ed~~~tl~~l~~~--~~~~~~~f~ysp~pgT~a~~~~~~v~ 354 (446)
T PRK14337 304 TDLIVGFPGETEEDFEQTLEAMRTV--GFASSFSFCYSDRPGTRAEMLPGKVP 354 (446)
T ss_pred EeEEEECCCCCHHHHHHHHHHHHhc--CCCeeEEEecCCCCCCccccCCCCCC
Confidence 9999999 99999999999999999 6899999999999999999875 344
No 56
>smart00729 Elp3 Elongator protein 3, MiaB family, Radical SAM. This superfamily contains MoaA, NifB, PqqE, coproporphyrinogen III oxidase, biotin synthase and MiaB families, and includes a representative in the eukaryotic elongator subunit, Elp-3. Some members of the family are methyltransferases.
Probab=99.91 E-value=2.4e-23 Score=173.24 Aligned_cols=187 Identities=28% Similarity=0.430 Sum_probs=146.1
Q ss_pred eeccccCCCCcCCCCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHHcC-----CcEEEEecccCCCCCCchhHHHHHHHH
Q 022946 91 LLSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAG-----STRFCMGAAWRDTIGRKTNFNQILEYV 165 (289)
Q Consensus 91 ~i~~~t~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~~g-----~~~i~i~~~~~~~~ge~~~~~~l~e~i 165 (289)
.+.+ |++|+++|.||+..... + . ...++++++.++++.+.+.| ++.+.++|+.... ..+..+..+++.+
T Consensus 4 ~i~~-t~~C~~~C~yC~~~~~~--~-~-~~~~~~e~i~~~~~~~~~~~~~~~~~~~i~~~gg~~~~-~~~~~~~~~~~~~ 77 (216)
T smart00729 4 LYII-TRGCPRRCTFCSFPSAR--G-K-LRSRYLEALVREIELLAEKGEKEILVGTVFIGGGTPTL-LSPEQLEELLEAI 77 (216)
T ss_pred EEEe-cCchhccCCcCCcCccc--c-c-hhHHHHHHHHHHHHHHHhcccCCcceeEEEECCCCCCC-CCHHHHHHHHHHH
Confidence 3455 99999999999987533 1 2 34478999999998886554 3556666643221 1111234444444
Q ss_pred HHHHhc--C--ceEEEeCCCCCHHHHHHHHHcCCCeEecCCCch-HHHHhccCCCCCHHHHHHHHHHHHHcC-CceeecE
Q 022946 166 KDIRDM--G--MEVCCTLGMLEKHQAIELKKAGLTAYNHNLDTS-REFYSKIITTRSYDERLETLKHVREAG-INVCSGG 239 (289)
Q Consensus 166 ~~ik~~--~--~~i~~~~g~l~~e~l~~L~~aG~~~v~i~let~-~~~~~~i~~~~~~~~~~~~i~~~~~~G-i~v~~~~ 239 (289)
+..... . +.+.++.+.++++.+++|+++|++.+.+++|+. ++.++.++++.++++++++++.++++| +.+...+
T Consensus 78 ~~~~~~~~~~~~~~~tn~~~~~~~~~~~l~~~~~~~i~isl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~~~v~~~~ 157 (216)
T smart00729 78 REILGLADDVEITIETRPGTLTEELLEALKEAGVNRVSLGVQSGSDEVLKAINRGHTVEDVLEAVEKLREAGPIKVSTDL 157 (216)
T ss_pred HHhCCCCCCeEEEEEeCcccCCHHHHHHHHHcCCCeEEEecccCCHHHHHHhcCCCCHHHHHHHHHHHHHhCCcceEEeE
Confidence 443321 2 233444467899999999999999999999999 999999999999999999999999999 8999999
Q ss_pred Eeec-CCCHHHHHHHHHHHhcCCCCCCeeeeccceecCCCCCCCCCC
Q 022946 240 IIGL-GEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQKL 285 (289)
Q Consensus 240 i~Gl-get~ed~~~~l~~l~~l~~~~~~v~i~~~~p~pgTpl~~~~~ 285 (289)
++|+ +++.+++.+.++++.++ +++.+.++.|+|.||||++..++
T Consensus 158 ~~g~~~~~~~~~~~~~~~~~~~--~~~~i~~~~~~p~~~t~~~~~~~ 202 (216)
T smart00729 158 IVGLPGETEEDFEETLKLLKEL--GPDRVSIFPLSPRPGTPLAKLYK 202 (216)
T ss_pred EecCCCCCHHHHHHHHHHHHHc--CCCeEEeeeeeeCCCChHHHhcc
Confidence 9999 69999999999999999 68999999999999999998763
No 57
>PRK14333 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=99.91 E-value=1.8e-23 Score=192.82 Aligned_cols=189 Identities=15% Similarity=0.261 Sum_probs=151.0
Q ss_pred eEeeccccCCCCcCCCCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHHcCCcEEEEecccCCCCCC------c--hhHHH
Q 022946 89 CTLLSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGR------K--TNFNQ 160 (289)
Q Consensus 89 ~~~i~~~t~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~~g~~~i~i~~~~~~~~ge------~--~~~~~ 160 (289)
..++.+ ++|||++|+||.++...+ +.+.+++++|+++++.+.+.|+++|.|.|...+.+|. | .....
T Consensus 149 ~a~i~i-~~GC~~~CsFC~ip~~rG----~~rsr~~e~V~~Ei~~l~~~g~kei~l~~~~~~~yg~d~~~~~p~~~~~~~ 223 (448)
T PRK14333 149 TAWVNV-IYGCNERCTYCVVPSVRG----KEQSRTPEAIRAEIEELAAQGYKEITLLGQNIDAYGRDLPGTTPEGRHQHT 223 (448)
T ss_pred eEEEEh-hcCCCCCCCCCceecccC----CCcccCHHHHHHHHHHHHHCCCcEEEEEecccchhcCCCCCcccccccccc
Confidence 356777 999999999999874332 2234689999999999999999999987643222221 1 01135
Q ss_pred HHHHHHHHHhc-Cc---eEE-EeCCCCCHHHHHHHHHc--CCCeEecCCCch-HHHHhccCCCCCHHHHHHHHHHHHHc-
Q 022946 161 ILEYVKDIRDM-GM---EVC-CTLGMLEKHQAIELKKA--GLTAYNHNLDTS-REFYSKIITTRSYDERLETLKHVREA- 231 (289)
Q Consensus 161 l~e~i~~ik~~-~~---~i~-~~~g~l~~e~l~~L~~a--G~~~v~i~let~-~~~~~~i~~~~~~~~~~~~i~~~~~~- 231 (289)
+.++++.+.+. ++ .+. .++..++++.++.|+++ |+..+.+++||. +++++.++++++.+++.++++.+++.
T Consensus 224 l~~Ll~~i~~~~~~~rir~~~~~p~~~~~eli~~~~~~~~~~~~l~igiQSgsd~vLk~m~R~~t~e~~~~~i~~lr~~~ 303 (448)
T PRK14333 224 LTDLLYYIHDVEGIERIRFATSHPRYFTERLIKACAELPKVCEHFHIPFQSGDNEILKAMARGYTHEKYRRIIDKIREYM 303 (448)
T ss_pred HHHHHHHHHhcCCCeEEEECCCChhhhhHHHHHHHhcCCcccccccCCCccCCHHHHHhcCCCCCHHHHHHHHHHHHHhC
Confidence 66666666542 32 221 22445789999999986 589999999999 99999999999999999999999998
Q ss_pred -CCceeecEEeec-CCCHHHHHHHHHHHhcCCCCCCeeeeccceecCCCCCCCCC
Q 022946 232 -GINVCSGGIIGL-GEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQK 284 (289)
Q Consensus 232 -Gi~v~~~~i~Gl-get~ed~~~~l~~l~~l~~~~~~v~i~~~~p~pgTpl~~~~ 284 (289)
|+.+.+++|+|+ |||.+++.++++++.++ +++.+.++.|.|.||||++..+
T Consensus 304 p~i~i~~d~IvGfPgET~edf~~tl~~l~~~--~~~~~~~~~~sp~pGT~~~~~~ 356 (448)
T PRK14333 304 PDASISADAIVGFPGETEAQFENTLKLVEEI--GFDQLNTAAYSPRPGTPAALWD 356 (448)
T ss_pred CCcEEEeeEEEECCCCCHHHHHHHHHHHHHc--CCCEEeeeeeecCCCCchhhCC
Confidence 777999999999 99999999999999999 6899999999999999998764
No 58
>COG0621 MiaB 2-methylthioadenine synthetase [Translation, ribosomal structure and biogenesis]
Probab=99.90 E-value=7.5e-23 Score=183.95 Aligned_cols=194 Identities=13% Similarity=0.260 Sum_probs=156.0
Q ss_pred EeEeeccccCCCCcCCCCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHHcCCcEEEEecccCCCCCCchh--HHHHHHHH
Q 022946 88 QCTLLSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTN--FNQILEYV 165 (289)
Q Consensus 88 ~~~~i~~~t~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~~g~~~i~i~~~~~~~~ge~~~--~~~l~e~i 165 (289)
..+.|.+ +.||++.|+||..+.. .|. .+..++++|+++++.+.+.|+++|++.|.+.+.+|.+.. ...+.+++
T Consensus 144 ~~A~v~I-~eGCn~~CtfCiiP~~--RG~--~rSr~~e~Il~ev~~Lv~~G~kEI~L~gqdv~aYG~D~~~~~~~l~~Ll 218 (437)
T COG0621 144 VRAFVKI-QEGCNKFCTFCIIPYA--RGK--ERSRPPEDILKEVKRLVAQGVKEIVLTGQDVNAYGKDLGGGKPNLADLL 218 (437)
T ss_pred eEEEEEh-hcCcCCCCCeeeeecc--CCC--ccCCCHHHHHHHHHHHHHCCCeEEEEEEEehhhccccCCCCccCHHHHH
Confidence 3467888 9999999999998743 232 234599999999999999999999998877666665543 24455555
Q ss_pred HHHHhc-C---ceEE-EeCCCCCHHHHHHHHHc--CCCeEecCCCch-HHHHhccCCCCCHHHHHHHHHHHHHc--CCce
Q 022946 166 KDIRDM-G---MEVC-CTLGMLEKHQAIELKKA--GLTAYNHNLDTS-REFYSKIITTRSYDERLETLKHVREA--GINV 235 (289)
Q Consensus 166 ~~ik~~-~---~~i~-~~~g~l~~e~l~~L~~a--G~~~v~i~let~-~~~~~~i~~~~~~~~~~~~i~~~~~~--Gi~v 235 (289)
+.+-+. | +.+. .++-.++++.++.+.+. =+..+.+.+|+. +++++.|+++++.+++++.++.+++. .+.+
T Consensus 219 ~~l~~I~G~~riR~~~~~P~~~~d~lI~~~~~~~kv~~~lHlPvQsGsd~ILk~M~R~yt~e~~~~~i~k~R~~~Pd~~i 298 (437)
T COG0621 219 RELSKIPGIERIRFGSSHPLEFTDDLIEAIAETPKVCPHLHLPVQSGSDRILKRMKRGYTVEEYLEIIEKLRAARPDIAI 298 (437)
T ss_pred HHHhcCCCceEEEEecCCchhcCHHHHHHHhcCCcccccccCccccCCHHHHHHhCCCcCHHHHHHHHHHHHHhCCCceE
Confidence 554432 2 3332 22455889999999985 356778899999 99999999999999999999999885 5678
Q ss_pred eecEEeec-CCCHHHHHHHHHHHhcCCCCCCeeeeccceecCCCCCCCC-CCCCC
Q 022946 236 CSGGIIGL-GEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQ-KLKYG 288 (289)
Q Consensus 236 ~~~~i~Gl-get~ed~~~~l~~l~~l~~~~~~v~i~~~~p~pgTpl~~~-~~~~~ 288 (289)
.+++|+|+ |||+||+.++++++++. +++.+.++.|.|.||||-+.. .++|.
T Consensus 299 ~tDiIVGFPgETeedFe~tl~lv~e~--~fd~~~~F~YSpRpGTpAa~~~~qvp~ 351 (437)
T COG0621 299 STDIIVGFPGETEEDFEETLDLVEEV--RFDRLHVFKYSPRPGTPAALMPDQVPE 351 (437)
T ss_pred eccEEEECCCCCHHHHHHHHHHHHHh--CCCEEeeeecCCCCCCccccCCCCCCH
Confidence 99999999 99999999999999999 699999999999999999964 35553
No 59
>PRK08446 coproporphyrinogen III oxidase; Provisional
Probab=99.90 E-value=1.2e-22 Score=181.63 Aligned_cols=183 Identities=13% Similarity=0.135 Sum_probs=144.0
Q ss_pred cCCCCcCCCCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHH----cCCcEEEEecccCCCCCCchhHHHHHHHHHHHHhc
Q 022946 96 TGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKE----AGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDM 171 (289)
Q Consensus 96 t~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~----~g~~~i~i~~~~~~~~ge~~~~~~l~e~i~~ik~~ 171 (289)
-+.|+.+|.||.+...... ........+.++++++...+ .+++.|.|+||... .-.+..+.++++.++.....
T Consensus 7 iPFC~~~C~yC~f~~~~~~--~~~~~~y~~~L~~Ei~~~~~~~~~~~v~~iyfGGGTPs-~l~~~~l~~ll~~i~~~~~~ 83 (350)
T PRK08446 7 IPFCESKCGYCAFNSYENK--HDLKKEYMQALCLDLKFELEQFTDEKIESVFIGGGTPS-TVSAKFYEPIFEIISPYLSK 83 (350)
T ss_pred eCCccCcCCCCCCcCcCCC--cccHHHHHHHHHHHHHHHHhhccCCceeEEEECCCccc-cCCHHHHHHHHHHHHHhcCC
Confidence 5799999999998753211 11111245667777764432 25777888765432 22344566666666554222
Q ss_pred C--ceEEEeCCCCCHHHHHHHHHcCCCeEecCCCch-HHHHhccCCCCCHHHHHHHHHHHHHcCCc-eeecEEeec-CCC
Q 022946 172 G--MEVCCTLGMLEKHQAIELKKAGLTAYNHNLDTS-REFYSKIITTRSYDERLETLKHVREAGIN-VCSGGIIGL-GEA 246 (289)
Q Consensus 172 ~--~~i~~~~g~l~~e~l~~L~~aG~~~v~i~let~-~~~~~~i~~~~~~~~~~~~i~~~~~~Gi~-v~~~~i~Gl-get 246 (289)
+ +.+.+++..++.+.++.|+++|+++|++|+||+ +++++.+.+.++++++.++++.++++|+. ++.++|+|+ |+|
T Consensus 84 ~~eitiE~nP~~~~~e~l~~l~~~GvnRiSiGvQS~~~~~L~~lgR~~~~~~~~~ai~~lr~~g~~~v~iDli~GlPgqt 163 (350)
T PRK08446 84 DCEITTEANPNSATKAWLKGMKNLGVNRISFGVQSFNEDKLKFLGRIHSQKQIIKAIENAKKAGFENISIDLIYDTPLDN 163 (350)
T ss_pred CceEEEEeCCCCCCHHHHHHHHHcCCCEEEEecccCCHHHHHHcCCCCCHHHHHHHHHHHHHcCCCEEEEEeecCCCCCC
Confidence 3 345566778999999999999999999999999 99999999999999999999999999996 899999999 999
Q ss_pred HHHHHHHHHHHhcCCCCCCeeeeccceecCCCCCCCC
Q 022946 247 EEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQ 283 (289)
Q Consensus 247 ~ed~~~~l~~l~~l~~~~~~v~i~~~~p~pgTpl~~~ 283 (289)
.+++.++++++.++ +++.+.++.+.|.||||+...
T Consensus 164 ~~~~~~~l~~~~~l--~~~~is~y~L~~~~gT~l~~~ 198 (350)
T PRK08446 164 KKLLKEELKLAKEL--PINHLSAYSLTIEENTPFFEK 198 (350)
T ss_pred HHHHHHHHHHHHhc--CCCEEEeccceecCCChhHHh
Confidence 99999999999999 699999999999999999874
No 60
>PRK05904 coproporphyrinogen III oxidase; Provisional
Probab=99.90 E-value=9.1e-23 Score=182.13 Aligned_cols=185 Identities=13% Similarity=0.145 Sum_probs=140.4
Q ss_pred cCCCCcCCCCCCCCCCCCCC-CCCcCCCCHHHHHHHHHHHHHcCCcEEEEecccCCCCCCchhHHHHHHHHHHHHhc--C
Q 022946 96 TGGCSEDCSYCPQSSRYDTG-VKGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDM--G 172 (289)
Q Consensus 96 t~~C~~~C~fC~~~~~~~~~-~~~~~~~~~eei~~~~~~~~~~g~~~i~i~~~~~~~~ge~~~~~~l~e~i~~ik~~--~ 172 (289)
-+.|+.+|.||.+.+..... ...+.....+++.++++.+....++.|.|+||.... -.+..+..+++.++..-.. .
T Consensus 13 iPFC~~kC~yC~f~~~~~~~~~~~~~~~~~~~l~~ei~~~~~~~~~tiy~GGGTPs~-L~~~~l~~ll~~i~~~~~~~~e 91 (353)
T PRK05904 13 IPFCQYICTFCDFKRILKTPQTKKIFKDFLKNIKMHIKNFKIKQFKTIYLGGGTPNC-LNDQLLDILLSTIKPYVDNNCE 91 (353)
T ss_pred eCCccCcCCCCCCeeccCCcccHHHHHHHHHHHHHHHHHhcCCCeEEEEECCCcccc-CCHHHHHHHHHHHHHhcCCCCe
Confidence 47899999999987542111 111111234555555443322446778777654322 2233444444444432111 2
Q ss_pred ceEEEeCCCCCHHHHHHHHHcCCCeEecCCCch-HHHHhccCCCCCHHHHHHHHHHHHHcCCc-eeecEEeec-CCCHHH
Q 022946 173 MEVCCTLGMLEKHQAIELKKAGLTAYNHNLDTS-REFYSKIITTRSYDERLETLKHVREAGIN-VCSGGIIGL-GEAEED 249 (289)
Q Consensus 173 ~~i~~~~g~l~~e~l~~L~~aG~~~v~i~let~-~~~~~~i~~~~~~~~~~~~i~~~~~~Gi~-v~~~~i~Gl-get~ed 249 (289)
+.+.+++..++++.++.|+++|+++|++|+||+ +++++.+.++++.++++++++.++++|+. ++.++|+|+ |||.++
T Consensus 92 itiE~nP~~lt~e~l~~lk~~G~nrisiGvQS~~d~vL~~l~R~~~~~~~~~ai~~lr~~G~~~v~~dlI~GlPgqt~e~ 171 (353)
T PRK05904 92 FTIECNPELITQSQINLLKKNKVNRISLGVQSMNNNILKQLNRTHTIQDSKEAINLLHKNGIYNISCDFLYCLPILKLKD 171 (353)
T ss_pred EEEEeccCcCCHHHHHHHHHcCCCEEEEecccCCHHHHHHcCCCCCHHHHHHHHHHHHHcCCCcEEEEEeecCCCCCHHH
Confidence 445667788999999999999999999999999 99999999999999999999999999996 999999999 999999
Q ss_pred HHHHHHHHhcCCCCCCeeeeccceecCCCCCCCC
Q 022946 250 RVGLLHTLATLPTHPESVPINALLAVKGTPLQDQ 283 (289)
Q Consensus 250 ~~~~l~~l~~l~~~~~~v~i~~~~p~pgTpl~~~ 283 (289)
+.++++++.++ +++.+.++.+.+.||||++..
T Consensus 172 ~~~tl~~~~~l--~p~~is~y~L~~~~gT~l~~~ 203 (353)
T PRK05904 172 LDEVFNFILKH--KINHISFYSLEIKEGSILKKY 203 (353)
T ss_pred HHHHHHHHHhc--CCCEEEEEeeEecCCChHhhc
Confidence 99999999999 689999999999999999875
No 61
>PRK08599 coproporphyrinogen III oxidase; Provisional
Probab=99.90 E-value=1.6e-22 Score=183.16 Aligned_cols=180 Identities=18% Similarity=0.193 Sum_probs=141.4
Q ss_pred cCCCCcCCCCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHHc---CCcEEEEecccCCCCCCchhHHHHHHHHHHHHhc-
Q 022946 96 TGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEA---GSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDM- 171 (289)
Q Consensus 96 t~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~~---g~~~i~i~~~~~~~~ge~~~~~~l~e~i~~ik~~- 171 (289)
-+.|+.+|.||.+++....+ ......++.++++++.+... +++.+.|+||. ++.- ..+.+.++++.+++.
T Consensus 8 iPfC~~~C~yC~~~~~~~~~--~~~~~y~~~l~~Ei~~~~~~~~~~i~~i~~gGGt-pt~l---~~~~l~~ll~~i~~~~ 81 (377)
T PRK08599 8 IPFCEHICYYCDFNKVFIKN--QPVDEYLDALIKEMNTYAIRPFDKLKTIYIGGGT-PTAL---SAEQLERLLTAIHRNL 81 (377)
T ss_pred eCCcCCCCCCCCCeeeccCc--cCHHHHHHHHHHHHHHhhhcCCCceeEEEeCCCC-cccC---CHHHHHHHHHHHHHhC
Confidence 46799999999987532111 11113567888888665544 46667665532 2211 235555555555532
Q ss_pred ------CceEEEeCCCCCHHHHHHHHHcCCCeEecCCCch-HHHHhccCCCCCHHHHHHHHHHHHHcCCc-eeecEEeec
Q 022946 172 ------GMEVCCTLGMLEKHQAIELKKAGLTAYNHNLDTS-REFYSKIITTRSYDERLETLKHVREAGIN-VCSGGIIGL 243 (289)
Q Consensus 172 ------~~~i~~~~g~l~~e~l~~L~~aG~~~v~i~let~-~~~~~~i~~~~~~~~~~~~i~~~~~~Gi~-v~~~~i~Gl 243 (289)
.+.+.++++.++.+.++.|+++|+++|++|+||+ +++++.++++++.+++.++++.++++|+. ++.++|+|+
T Consensus 82 ~~~~~~eit~e~~p~~l~~e~l~~l~~~G~~rvsiGvqS~~~~~l~~l~r~~~~~~~~~~i~~l~~~g~~~v~~dli~Gl 161 (377)
T PRK08599 82 PLSGLEEFTFEANPGDLTKEKLQVLKDSGVNRISLGVQTFNDELLKKIGRTHNEEDVYEAIANAKKAGFDNISIDLIYAL 161 (377)
T ss_pred CCCCCCEEEEEeCCCCCCHHHHHHHHHcCCCEEEEecccCCHHHHHHcCCCCCHHHHHHHHHHHHHcCCCcEEEeeecCC
Confidence 2334566788999999999999999999999999 99999999999999999999999999997 889999999
Q ss_pred -CCCHHHHHHHHHHHhcCCCCCCeeeeccceecCCCCCCCC
Q 022946 244 -GEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQ 283 (289)
Q Consensus 244 -get~ed~~~~l~~l~~l~~~~~~v~i~~~~p~pgTpl~~~ 283 (289)
|||.+++.++++++.++ +++.+.++.+.|.||||++..
T Consensus 162 Pgqt~~~~~~~l~~~~~l--~~~~i~~y~l~~~pgT~~~~~ 200 (377)
T PRK08599 162 PGQTIEDFKESLAKALAL--DIPHYSAYSLILEPKTVFYNL 200 (377)
T ss_pred CCCCHHHHHHHHHHHHcc--CCCEEeeeceeecCCChhHHH
Confidence 99999999999999999 689999999999999999753
No 62
>PRK05799 coproporphyrinogen III oxidase; Provisional
Probab=99.89 E-value=2e-22 Score=182.30 Aligned_cols=182 Identities=20% Similarity=0.302 Sum_probs=141.6
Q ss_pred cCCCCcCCCCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHH-cCCcEEEEecccCCCCCCchhHHHHHHHHHHHH-hcCc
Q 022946 96 TGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKE-AGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIR-DMGM 173 (289)
Q Consensus 96 t~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~-~g~~~i~i~~~~~~~~ge~~~~~~l~e~i~~ik-~~~~ 173 (289)
-+.|+++|.||.+...... .......++.++++++.... .+++.|.|+||. +....+..++.+.+.++.+. ..++
T Consensus 10 iPfC~~~C~yC~~~~~~~~--~~~~~~y~~~l~~Ei~~~~~~~~~~~i~~gGGt-ps~l~~~~l~~L~~~i~~~~~~~~~ 86 (374)
T PRK05799 10 IPFCKQKCLYCDFPSYSGK--EDLMMEYIKALSKEIRNSTKNKKIKSIFIGGGT-PTYLSLEALEILKETIKKLNKKEDL 86 (374)
T ss_pred eCCccCCCCCCCCCcccCC--cchHHHHHHHHHHHHHhhcCCCceeEEEECCCc-ccCCCHHHHHHHHHHHHhCCCCCCC
Confidence 5789999999998754221 11111136777777764422 346677776643 33233445555666655432 2233
Q ss_pred e--EEEeCCCCCHHHHHHHHHcCCCeEecCCCch-HHHHhccCCCCCHHHHHHHHHHHHHcCCc-eeecEEeec-CCCHH
Q 022946 174 E--VCCTLGMLEKHQAIELKKAGLTAYNHNLDTS-REFYSKIITTRSYDERLETLKHVREAGIN-VCSGGIIGL-GEAEE 248 (289)
Q Consensus 174 ~--i~~~~g~l~~e~l~~L~~aG~~~v~i~let~-~~~~~~i~~~~~~~~~~~~i~~~~~~Gi~-v~~~~i~Gl-get~e 248 (289)
+ +.++++.++++.++.|+++|+++|++|+||. +++++.+.+.+++++++++++.++++|+. ++.++|+|+ |||.+
T Consensus 87 eitie~~p~~~t~e~l~~l~~~G~~rvsiGvqS~~d~~L~~l~R~~~~~~~~~ai~~l~~~g~~~v~~dli~GlPgqt~e 166 (374)
T PRK05799 87 EFTVEGNPGTFTEEKLKILKSMGVNRLSIGLQAWQNSLLKYLGRIHTFEEFLENYKLARKLGFNNINVDLMFGLPNQTLE 166 (374)
T ss_pred EEEEEeCCCcCCHHHHHHHHHcCCCEEEEECccCCHHHHHHcCCCCCHHHHHHHHHHHHHcCCCcEEEEeecCCCCCCHH
Confidence 4 4556778999999999999999999999999 99999999999999999999999999996 899999999 99999
Q ss_pred HHHHHHHHHhcCCCCCCeeeeccceecCCCCCCC
Q 022946 249 DRVGLLHTLATLPTHPESVPINALLAVKGTPLQD 282 (289)
Q Consensus 249 d~~~~l~~l~~l~~~~~~v~i~~~~p~pgTpl~~ 282 (289)
++.++++++.++ +++.+.++.+.|.||||+++
T Consensus 167 ~~~~~l~~~~~l--~~~~is~y~l~~~pgT~l~~ 198 (374)
T PRK05799 167 DWKETLEKVVEL--NPEHISCYSLIIEEGTPFYN 198 (374)
T ss_pred HHHHHHHHHHhc--CCCEEEEeccEecCCCHHHH
Confidence 999999999999 68999999999999999875
No 63
>TIGR00539 hemN_rel putative oxygen-independent coproporphyrinogen III oxidase. Experimentally determined examples of oxygen-independent coproporphyrinogen III oxidase, an enzyme that replaces HemF function under anaerobic conditions, belong to a family of proteins described by the model hemN. This model, hemN_rel, models a closely related protein, shorter at the amino end and lacking the region containing the motif PYRT[SC]YP found in members of the hemN family. Several species, including E. coli, Helicobacter pylori, Aquifex aeolicus, and Chlamydia trachomatis, have members of both this family and the E. coli hemN family. The member of this family from Bacillus subtilis was shown to complement an hemF/hemN double mutant of Salmonella typimurium and to prevent accumulation of coproporphyrinogen III under anaerobic conditions, but the exact role of this protein is still uncertain. It is found in a number of species that do not synthesize heme de novo.
Probab=99.89 E-value=5.2e-22 Score=178.56 Aligned_cols=183 Identities=14% Similarity=0.156 Sum_probs=137.3
Q ss_pred cCCCCcCCCCCCCCCCCCCCCCCcCCCCHHHHHHHHHHH-HHcC---CcEEEEecccCCCCCCchhHHHHHHHHHHHH--
Q 022946 96 TGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKA-KEAG---STRFCMGAAWRDTIGRKTNFNQILEYVKDIR-- 169 (289)
Q Consensus 96 t~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~-~~~g---~~~i~i~~~~~~~~ge~~~~~~l~e~i~~ik-- 169 (289)
-+.|+.+|.||.+....... .... .-.+.+.+++... ...+ ++.|.|+||.. +.-.+..+..+++.+++.-
T Consensus 7 iPFC~~~C~yC~f~~~~~~~-~~~~-~y~~~l~~Ei~~~~~~~~~~~v~~i~~GGGtP-s~l~~~~l~~ll~~i~~~~~~ 83 (360)
T TIGR00539 7 IPFCENKCGYCDFNSYENKS-GPKE-EYTQALCQDLKHALSQTDQEPLESIFIGGGTP-NTLSVEAFERLFESIYQHASL 83 (360)
T ss_pred eCCCcCcCCCCCCcccCcCc-cCHH-HHHHHHHHHHHHHHHhcCCCcccEEEeCCCch-hcCCHHHHHHHHHHHHHhCCC
Confidence 57999999999987532111 0000 0134444444432 2234 67777776432 2122233444554444321
Q ss_pred hcCce--EEEeCCCCCHHHHHHHHHcCCCeEecCCCch-HHHHhccCCCCCHHHHHHHHHHHHHcCCc-eeecEEeec-C
Q 022946 170 DMGME--VCCTLGMLEKHQAIELKKAGLTAYNHNLDTS-REFYSKIITTRSYDERLETLKHVREAGIN-VCSGGIIGL-G 244 (289)
Q Consensus 170 ~~~~~--i~~~~g~l~~e~l~~L~~aG~~~v~i~let~-~~~~~~i~~~~~~~~~~~~i~~~~~~Gi~-v~~~~i~Gl-g 244 (289)
..+.+ +.++++.++.+.++.|+++|+++|++|+||+ +++++.+.+.+++++++++++.++++|+. ++.++|+|+ |
T Consensus 84 ~~~~eitie~np~~lt~e~l~~l~~~Gv~risiGvqS~~~~~l~~lgR~~~~~~~~~ai~~l~~~G~~~v~~dli~GlPg 163 (360)
T TIGR00539 84 SDDCEITTEANPELITAEWCKGLKGAGINRLSLGVQSFRDDKLLFLGRQHSAKNIAPAIETALKSGIENISLDLMYGLPL 163 (360)
T ss_pred CCCCEEEEEeCCCCCCHHHHHHHHHcCCCEEEEecccCChHHHHHhCCCCCHHHHHHHHHHHHHcCCCeEEEeccCCCCC
Confidence 22333 4566788999999999999999999999999 99999998899999999999999999995 899999999 9
Q ss_pred CCHHHHHHHHHHHhcCCCCCCeeeeccceecCCCCCCCC
Q 022946 245 EAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQ 283 (289)
Q Consensus 245 et~ed~~~~l~~l~~l~~~~~~v~i~~~~p~pgTpl~~~ 283 (289)
+|.+++.++++++.++ +++.+.++.+.|.||||++..
T Consensus 164 qt~~~~~~~l~~~~~l--~~~~is~y~l~~~~gT~~~~~ 200 (360)
T TIGR00539 164 QTLNSLKEELKLAKEL--PINHLSAYALSVEPNTNFEKN 200 (360)
T ss_pred CCHHHHHHHHHHHHcc--CCCEEEeecceEcCCChhhhh
Confidence 9999999999999999 689999999999999999874
No 64
>PRK05660 HemN family oxidoreductase; Provisional
Probab=99.89 E-value=5.5e-22 Score=179.12 Aligned_cols=177 Identities=15% Similarity=0.217 Sum_probs=138.2
Q ss_pred cCCCCcCCCCCCCCCCCCCCCCCcCCCCH----HHHHHHHHHHH----HcCCcEEEEecccCCCCCCchhHHHHHHHHHH
Q 022946 96 TGGCSEDCSYCPQSSRYDTGVKGQKLMTK----DAVMQAAQKAK----EAGSTRFCMGAAWRDTIGRKTNFNQILEYVKD 167 (289)
Q Consensus 96 t~~C~~~C~fC~~~~~~~~~~~~~~~~~~----eei~~~~~~~~----~~g~~~i~i~~~~~~~~ge~~~~~~l~e~i~~ 167 (289)
-+.|+.+|.||.+.+... ... .+. +.++++++... ..+++.|.|+||.... ...+.+.++++.
T Consensus 13 iPFC~~~C~yC~f~~~~~----~~~-~~~~~Y~~~l~~Ei~~~~~~~~~~~v~ti~~GGGtPs~----l~~~~l~~ll~~ 83 (378)
T PRK05660 13 IPWCVQKCPYCDFNSHAL----KGE-VPEDEYVDHLLADLDADLPLVQGREVHSIFIGGGTPSL----FSAEAIQRLLDG 83 (378)
T ss_pred eCCccCcCCCCCCeecCC----CCc-CCHHHHHHHHHHHHHHHhHhccCCceeEEEeCCCcccc----CCHHHHHHHHHH
Confidence 578999999999875321 111 222 33444443211 1357778887643221 123556666665
Q ss_pred HHh-----cCce--EEEeCCCCCHHHHHHHHHcCCCeEecCCCch-HHHHhccCCCCCHHHHHHHHHHHHHcCCc-eeec
Q 022946 168 IRD-----MGME--VCCTLGMLEKHQAIELKKAGLTAYNHNLDTS-REFYSKIITTRSYDERLETLKHVREAGIN-VCSG 238 (289)
Q Consensus 168 ik~-----~~~~--i~~~~g~l~~e~l~~L~~aG~~~v~i~let~-~~~~~~i~~~~~~~~~~~~i~~~~~~Gi~-v~~~ 238 (289)
+++ .+.+ +.++++.++.+.++.|+++|+++|++|+||+ +++++.+++.+++++.+++++.++++|+. ++.+
T Consensus 84 l~~~~~~~~~~eit~e~np~~l~~e~l~~Lk~~Gv~risiGvqS~~~~~L~~l~r~~~~~~~~~ai~~~~~~G~~~v~~d 163 (378)
T PRK05660 84 VRARLPFAPDAEITMEANPGTVEADRFVGYQRAGVNRISIGVQSFSEEKLKRLGRIHGPDEAKRAAKLAQGLGLRSFNLD 163 (378)
T ss_pred HHHhCCCCCCcEEEEEeCcCcCCHHHHHHHHHcCCCEEEeccCcCCHHHHHHhCCCCCHHHHHHHHHHHHHcCCCeEEEE
Confidence 553 2233 4566788999999999999999999999999 99999999999999999999999999996 7999
Q ss_pred EEeec-CCCHHHHHHHHHHHhcCCCCCCeeeeccceecCCCCCCCC
Q 022946 239 GIIGL-GEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQ 283 (289)
Q Consensus 239 ~i~Gl-get~ed~~~~l~~l~~l~~~~~~v~i~~~~p~pgTpl~~~ 283 (289)
+|+|+ |+|.+++.++++++.++ +++.+.++.+.|.|||++++.
T Consensus 164 li~Glpgqt~~~~~~~l~~~~~l--~p~~is~y~l~~~~gT~l~~~ 207 (378)
T PRK05660 164 LMHGLPDQSLEEALDDLRQAIAL--NPPHLSWYQLTIEPNTLFGSR 207 (378)
T ss_pred eecCCCCCCHHHHHHHHHHHHhc--CCCeEEeeccEeccCCccccc
Confidence 99999 99999999999999999 699999999999999999874
No 65
>PRK07379 coproporphyrinogen III oxidase; Provisional
Probab=99.89 E-value=1.1e-21 Score=178.43 Aligned_cols=185 Identities=15% Similarity=0.166 Sum_probs=139.3
Q ss_pred cCCCCcCCCCCCCCCCCCCCCCCcC-CC----CHHHHHHHHHHHHH--cCCcEEEEecccCCCCCCchhHHHHHHHHHHH
Q 022946 96 TGGCSEDCSYCPQSSRYDTGVKGQK-LM----TKDAVMQAAQKAKE--AGSTRFCMGAAWRDTIGRKTNFNQILEYVKDI 168 (289)
Q Consensus 96 t~~C~~~C~fC~~~~~~~~~~~~~~-~~----~~eei~~~~~~~~~--~g~~~i~i~~~~~~~~ge~~~~~~l~e~i~~i 168 (289)
-+.|+.+|.||.++........+.. .. -.+.+.++++.... .+++.|.|+||.... -.+..+..+++.++..
T Consensus 17 iPFC~~~C~YC~f~~~~~~~~~~~~~~~~~~~Y~~~L~~Ei~~~~~~~~~i~~iy~GGGTps~-l~~~~l~~ll~~i~~~ 95 (400)
T PRK07379 17 IPFCRRRCFYCDFPISVVGDRTRGGTSGLIEEYVEVLCQEIAITPSFGQPLQTVFFGGGTPSL-LSVEQLERILTTLDQR 95 (400)
T ss_pred eccccCcCCCCCCccccccccccccccchHHHHHHHHHHHHHHhhccCCceeEEEECCCcccc-CCHHHHHHHHHHHHHh
Confidence 5799999999998643211101000 01 13455555554322 246778887654322 2233444555554432
Q ss_pred Hhc----CceEEEeCCCCCHHHHHHHHHcCCCeEecCCCch-HHHHhccCCCCCHHHHHHHHHHHHHcCCc-eeecEEee
Q 022946 169 RDM----GMEVCCTLGMLEKHQAIELKKAGLTAYNHNLDTS-REFYSKIITTRSYDERLETLKHVREAGIN-VCSGGIIG 242 (289)
Q Consensus 169 k~~----~~~i~~~~g~l~~e~l~~L~~aG~~~v~i~let~-~~~~~~i~~~~~~~~~~~~i~~~~~~Gi~-v~~~~i~G 242 (289)
-.. .+.+.++++.++.+.++.|+++|+++|++|+||+ +++++.+.+.++.++++++++.++++|+. ++.++|+|
T Consensus 96 ~~~~~~~eit~E~~P~~lt~e~l~~l~~~GvnrislGvQS~~d~~L~~l~R~~~~~~~~~ai~~l~~~G~~~v~~dlI~G 175 (400)
T PRK07379 96 FGIAPDAEISLEIDPGTFDLEQLQGYRSLGVNRVSLGVQAFQDELLALCGRSHRVKDIFAAVDLIHQAGIENFSLDLISG 175 (400)
T ss_pred CCCCCCCEEEEEeCCCcCCHHHHHHHHHCCCCEEEEEcccCCHHHHHHhCCCCCHHHHHHHHHHHHHcCCCeEEEEeecC
Confidence 111 2334566788999999999999999999999999 99999999999999999999999999998 99999999
Q ss_pred c-CCCHHHHHHHHHHHhcCCCCCCeeeeccceecCCCCCCCC
Q 022946 243 L-GEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQ 283 (289)
Q Consensus 243 l-get~ed~~~~l~~l~~l~~~~~~v~i~~~~p~pgTpl~~~ 283 (289)
+ |||.+++.++++++.++ +++.+.++.+.|.||||++..
T Consensus 176 lPgqt~e~~~~tl~~~~~l--~p~~is~y~L~~~pgT~l~~~ 215 (400)
T PRK07379 176 LPHQTLEDWQASLEAAIAL--NPTHLSCYDLVLEPGTAFGKQ 215 (400)
T ss_pred CCCCCHHHHHHHHHHHHcC--CCCEEEEecceecCCchhHHH
Confidence 9 99999999999999999 699999999999999999864
No 66
>PRK05628 coproporphyrinogen III oxidase; Validated
Probab=99.88 E-value=1.8e-21 Score=176.12 Aligned_cols=185 Identities=19% Similarity=0.245 Sum_probs=139.7
Q ss_pred cCCCCcCCCCCCCCCCCCCCCCCcC--CCCHHHHHHHHHHHHH-c-----CCcEEEEecccCCCCCCchhHHHHHHHHHH
Q 022946 96 TGGCSEDCSYCPQSSRYDTGVKGQK--LMTKDAVMQAAQKAKE-A-----GSTRFCMGAAWRDTIGRKTNFNQILEYVKD 167 (289)
Q Consensus 96 t~~C~~~C~fC~~~~~~~~~~~~~~--~~~~eei~~~~~~~~~-~-----g~~~i~i~~~~~~~~ge~~~~~~l~e~i~~ 167 (289)
-+.|+.+|.||.+.+.......... ..-.+.+.++++.... . .++.+.|+||... .-.+..+.++++.++.
T Consensus 9 iPFC~~~C~yC~f~~~~~~~~~~~~~~~~Y~~~l~~Ei~~~~~~~~~~~~~i~~i~~GGGTPs-~l~~~~l~~ll~~i~~ 87 (375)
T PRK05628 9 VPFCATRCGYCDFNTYTAAELGGGASPDGYLDALRAELELAAAVLGDPAPPVSTVFVGGGTPS-LLGAEGLARVLDAVRD 87 (375)
T ss_pred eCCcCCcCCCCCCCcccccccccccCHHHHHHHHHHHHHHHHHhhccCCCceeEEEeCCCccc-cCCHHHHHHHHHHHHH
Confidence 5789999999998753221100001 0125667777765443 2 2566777664322 2223344444444443
Q ss_pred HHh--cCceE--EEeCCCCCHHHHHHHHHcCCCeEecCCCch-HHHHhccCCCCCHHHHHHHHHHHHHcCCc-eeecEEe
Q 022946 168 IRD--MGMEV--CCTLGMLEKHQAIELKKAGLTAYNHNLDTS-REFYSKIITTRSYDERLETLKHVREAGIN-VCSGGII 241 (289)
Q Consensus 168 ik~--~~~~i--~~~~g~l~~e~l~~L~~aG~~~v~i~let~-~~~~~~i~~~~~~~~~~~~i~~~~~~Gi~-v~~~~i~ 241 (289)
... .+.++ .+++..++++.++.|+++|+++|++|+||+ +++++.+.+.++.++++++++.++++|+. ++.++|+
T Consensus 88 ~~~~~~~~e~t~e~~p~~i~~e~l~~l~~~G~~rvslGvQS~~~~~L~~l~R~~s~~~~~~a~~~l~~~g~~~v~~dli~ 167 (375)
T PRK05628 88 TFGLAPGAEVTTEANPESTSPEFFAALRAAGFTRVSLGMQSAAPHVLAVLDRTHTPGRAVAAAREARAAGFEHVNLDLIY 167 (375)
T ss_pred hCCCCCCCEEEEEeCCCCCCHHHHHHHHHcCCCEEEEecccCCHHHHHHcCCCCCHHHHHHHHHHHHHcCCCcEEEEEec
Confidence 221 12343 456778999999999999999999999999 99999999999999999999999999998 9999999
Q ss_pred ec-CCCHHHHHHHHHHHhcCCCCCCeeeeccceecCCCCCCCC
Q 022946 242 GL-GEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQ 283 (289)
Q Consensus 242 Gl-get~ed~~~~l~~l~~l~~~~~~v~i~~~~p~pgTpl~~~ 283 (289)
|+ |||.+++.++++++.++ +++.+.++.+.+.||||++..
T Consensus 168 GlPgqt~~~~~~tl~~~~~l--~~~~i~~y~l~~~~gT~l~~~ 208 (375)
T PRK05628 168 GTPGESDDDWRASLDAALEA--GVDHVSAYALIVEDGTALARR 208 (375)
T ss_pred cCCCCCHHHHHHHHHHHHhc--CCCEEEeeeeecCCCChHHHH
Confidence 99 99999999999999999 699999999999999999764
No 67
>PRK09058 coproporphyrinogen III oxidase; Provisional
Probab=99.88 E-value=2.1e-21 Score=178.96 Aligned_cols=182 Identities=16% Similarity=0.202 Sum_probs=140.8
Q ss_pred cCCCCcCCCCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHH------cCCcEEEEecccCCCCCCchhHHHHHHHHHHHH
Q 022946 96 TGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKE------AGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIR 169 (289)
Q Consensus 96 t~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~------~g~~~i~i~~~~~~~~ge~~~~~~l~e~i~~ik 169 (289)
-+.|+.+|.||.+.+... .........+.++++++...+ ..++.|.|+||.. +.-.+..+.++++.++..-
T Consensus 68 IPFC~~~C~yC~f~~~~~--~~~~~~~Y~~~L~~Ei~~~~~~~~~~~~~i~~iy~GGGTP-s~L~~~~l~~ll~~i~~~~ 144 (449)
T PRK09058 68 IPFCRTHCTFCGFFQNAW--NPEAVARYTDALIRELAMEADSPLTQSAPIHAVYFGGGTP-TALSAEDLARLITALREYL 144 (449)
T ss_pred eCCcCCcCCCCCCcCcCC--chhhHHHHHHHHHHHHHHHhhccccCCCeeeEEEECCCcc-ccCCHHHHHHHHHHHHHhC
Confidence 578999999999864311 111111255777777765543 2366777776542 2222334455555554422
Q ss_pred hc--C--ceEEEeCCCCCHHHHHHHHHcCCCeEecCCCch-HHHHhccCCCCCHHHHHHHHHHHHHcC-CceeecEEeec
Q 022946 170 DM--G--MEVCCTLGMLEKHQAIELKKAGLTAYNHNLDTS-REFYSKIITTRSYDERLETLKHVREAG-INVCSGGIIGL 243 (289)
Q Consensus 170 ~~--~--~~i~~~~g~l~~e~l~~L~~aG~~~v~i~let~-~~~~~~i~~~~~~~~~~~~i~~~~~~G-i~v~~~~i~Gl 243 (289)
.. . +.+.+++..++.+.++.|+++|+++|++|+||+ +++++.+.+.++.++++++++.+++.| ..+++++|+|+
T Consensus 145 ~l~~~~eitiE~~p~~~t~e~l~~l~~aGvnRiSiGVQSf~d~vLk~lgR~~~~~~~~~~i~~l~~~g~~~v~~DlI~Gl 224 (449)
T PRK09058 145 PLAPDCEITLEGRINGFDDEKADAALDAGANRFSIGVQSFNTQVRRRAGRKDDREEVLARLEELVARDRAAVVCDLIFGL 224 (449)
T ss_pred CCCCCCEEEEEeCcCcCCHHHHHHHHHcCCCEEEecCCcCCHHHHHHhCCCCCHHHHHHHHHHHHhCCCCcEEEEEEeeC
Confidence 11 2 334566778999999999999999999999999 999999999999999999999999999 57999999999
Q ss_pred -CCCHHHHHHHHHHHhcCCCCCCeeeeccceecCCCCCCC
Q 022946 244 -GEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQD 282 (289)
Q Consensus 244 -get~ed~~~~l~~l~~l~~~~~~v~i~~~~p~pgTpl~~ 282 (289)
|+|.+++.++++++.++ +++.+.++.+.+.|||||++
T Consensus 225 PgqT~e~~~~~l~~~~~l--~~~~is~y~L~~~pgT~l~~ 262 (449)
T PRK09058 225 PGQTPEIWQQDLAIVRDL--GLDGVDLYALNLLPGTPLAK 262 (449)
T ss_pred CCCCHHHHHHHHHHHHhc--CCCEEEEeccccCCCCHHHH
Confidence 99999999999999999 69999999999999999876
No 68
>PRK09057 coproporphyrinogen III oxidase; Provisional
Probab=99.88 E-value=2.9e-21 Score=174.69 Aligned_cols=183 Identities=14% Similarity=0.135 Sum_probs=141.5
Q ss_pred cCCCCcCCCCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHH----cCCcEEEEecccCCCCCCchhHHHHHHHHHHHHhc
Q 022946 96 TGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKE----AGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDM 171 (289)
Q Consensus 96 t~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~----~g~~~i~i~~~~~~~~ge~~~~~~l~e~i~~ik~~ 171 (289)
-+.|..+|.||.+.+..... .. ...-.+.+.++++.... ..++.|.|+||... .-.+..+..+++.++..-..
T Consensus 11 IPFC~~kC~yC~f~~~~~~~-~~-~~~Y~~aL~~Ei~~~~~~~~~~~i~tiy~GGGTPs-~l~~~~L~~ll~~i~~~f~~ 87 (380)
T PRK09057 11 WPFCLAKCPYCDFNSHVRHA-ID-QARFAAAFLRELATEAARTGPRTLTSIFFGGGTPS-LMQPETVAALLDAIARLWPV 87 (380)
T ss_pred eCCcCCcCCCCCCcccCcCc-CC-HHHHHHHHHHHHHHHHHHcCCCCcCeEEeCCCccc-cCCHHHHHHHHHHHHHhCCC
Confidence 58999999999987532111 00 00134666666664432 24678888775432 22233444444444432111
Q ss_pred ----CceEEEeCCCCCHHHHHHHHHcCCCeEecCCCch-HHHHhccCCCCCHHHHHHHHHHHHHcCCceeecEEeec-CC
Q 022946 172 ----GMEVCCTLGMLEKHQAIELKKAGLTAYNHNLDTS-REFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGL-GE 245 (289)
Q Consensus 172 ----~~~i~~~~g~l~~e~l~~L~~aG~~~v~i~let~-~~~~~~i~~~~~~~~~~~~i~~~~~~Gi~v~~~~i~Gl-ge 245 (289)
.+.+.++++.++.+.++.|+++|+++|++|+||+ +++++.+.+.++.++..++++.+++++..++.++|+|+ |+
T Consensus 88 ~~~~eit~E~~P~~i~~e~L~~l~~~GvnrislGvQS~~d~vL~~l~R~~~~~~~~~ai~~~~~~~~~v~~dli~GlPgq 167 (380)
T PRK09057 88 ADDIEITLEANPTSVEAGRFRGYRAAGVNRVSLGVQALNDADLRFLGRLHSVAEALAAIDLAREIFPRVSFDLIYARPGQ 167 (380)
T ss_pred CCCccEEEEECcCcCCHHHHHHHHHcCCCEEEEecccCCHHHHHHcCCCCCHHHHHHHHHHHHHhCccEEEEeecCCCCC
Confidence 2445677888999999999999999999999999 99999999999999999999999999889999999999 99
Q ss_pred CHHHHHHHHHHHhcCCCCCCeeeeccceecCCCCCCCC
Q 022946 246 AEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQ 283 (289)
Q Consensus 246 t~ed~~~~l~~l~~l~~~~~~v~i~~~~p~pgTpl~~~ 283 (289)
|.+++.+++..+.++ +++.+.++.+.+.|||||++.
T Consensus 168 t~~~~~~~l~~~~~l--~p~~is~y~L~~~~gT~l~~~ 203 (380)
T PRK09057 168 TLAAWRAELKEALSL--AADHLSLYQLTIEEGTAFYGL 203 (380)
T ss_pred CHHHHHHHHHHHHhc--CCCeEEeecceecCCChHHHH
Confidence 999999999999999 699999999999999999863
No 69
>PLN02951 Molybderin biosynthesis protein CNX2
Probab=99.87 E-value=1.5e-20 Score=168.92 Aligned_cols=188 Identities=20% Similarity=0.295 Sum_probs=150.6
Q ss_pred CCeeEEeEeeccccCCCCcCCCCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHHcCCcEEEEecccCCCCCCchhHHHHH
Q 022946 83 FREVQQCTLLSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQIL 162 (289)
Q Consensus 83 g~~~~~~~~i~~~t~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~~g~~~i~i~~~~~~~~ge~~~~~~l~ 162 (289)
|..+..- -+++ |.+||++|.||....... .......++.+++.+.++.+.+.|++.|.|+| |||....++.
T Consensus 54 gr~~~~l-risv-T~~CNlrC~yC~~~~~~~-~~~~~~~ls~eei~~~i~~~~~~Gv~~I~~tG------GEPllr~dl~ 124 (373)
T PLN02951 54 GRRHNYL-RISL-TERCNLRCQYCMPEEGVE-LTPKSHLLSQDEIVRLAGLFVAAGVDKIRLTG------GEPTLRKDIE 124 (373)
T ss_pred CCcccEE-EEEE-cCCcCcCCCCCCCCcCCC-CCCccccCCHHHHHHHHHHHHHCCCCEEEEEC------CCCcchhhHH
Confidence 4544322 2666 999999999997653211 11223458999999999988899999999886 6777777889
Q ss_pred HHHHHHHhc-Cce-E-EEeCCCCCHHHHHHHHHcCCCeEecCCCch-HHHHhccCCCCCHHHHHHHHHHHHHcCC-ceee
Q 022946 163 EYVKDIRDM-GME-V-CCTLGMLEKHQAIELKKAGLTAYNHNLDTS-REFYSKIITTRSYDERLETLKHVREAGI-NVCS 237 (289)
Q Consensus 163 e~i~~ik~~-~~~-i-~~~~g~l~~e~l~~L~~aG~~~v~i~let~-~~~~~~i~~~~~~~~~~~~i~~~~~~Gi-~v~~ 237 (289)
++++.+++. ++. + .+|||.+..+.+++|+++|+++|.+++|+. ++.|+.+.+...+++++++|+.+++.|+ .+..
T Consensus 125 eli~~l~~~~gi~~i~itTNG~lL~~~~~~L~~aGld~VnISLDsl~~e~~~~itr~~~~~~vl~~I~~a~~~G~~~vki 204 (373)
T PLN02951 125 DICLQLSSLKGLKTLAMTTNGITLSRKLPRLKEAGLTSLNISLDTLVPAKFEFLTRRKGHDRVLESIDTAIELGYNPVKV 204 (373)
T ss_pred HHHHHHHhcCCCceEEEeeCcchHHHHHHHHHhCCCCeEEEeeccCCHHHHHHHhcCCCHHHHHHHHHHHHHcCCCcEEE
Confidence 999888865 664 4 467998777889999999999999999999 9999999887789999999999999997 4666
Q ss_pred cEEeecCCCHHHHHHHHHHHhcCCCCCCeeeeccceecCCCCCCC
Q 022946 238 GGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQD 282 (289)
Q Consensus 238 ~~i~Glget~ed~~~~l~~l~~l~~~~~~v~i~~~~p~pgTpl~~ 282 (289)
.+++-.|.+.+++.++++++++++ ..+.+..|+|..+++...
T Consensus 205 n~vv~~g~N~~Ei~~li~~a~~~g---i~vr~ie~mP~~~~~~~~ 246 (373)
T PLN02951 205 NCVVMRGFNDDEICDFVELTRDKP---INVRFIEFMPFDGNVWNV 246 (373)
T ss_pred EEEecCCCCHHHHHHHHHHHHhCC---CeEEEEEcccCCCCcccc
Confidence 655544788999999999999882 568889999999887543
No 70
>PRK13361 molybdenum cofactor biosynthesis protein A; Provisional
Probab=99.87 E-value=1.3e-20 Score=167.46 Aligned_cols=182 Identities=19% Similarity=0.260 Sum_probs=146.9
Q ss_pred CCeeEEeEeeccccCCCCcCCCCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHHcCCcEEEEecccCCCCCCchhHHHHH
Q 022946 83 FREVQQCTLLSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQIL 162 (289)
Q Consensus 83 g~~~~~~~~i~~~t~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~~g~~~i~i~~~~~~~~ge~~~~~~l~ 162 (289)
|+++..- .+++ |++||++|.||..... ....+...++.|++.+.++.+.+.|+..|.|+| |||...+++.
T Consensus 10 gr~i~~l-~i~i-T~~CNl~C~yC~~~~~--~~~~~~~~ls~eei~~li~~~~~~Gv~~I~~tG------GEPllr~dl~ 79 (329)
T PRK13361 10 GRTVTYL-RLSV-TDRCDFRCVYCMSEDP--CFLPRDQVLSLEELAWLAQAFTELGVRKIRLTG------GEPLVRRGCD 79 (329)
T ss_pred CCccCeE-EEEe-cCCccccCCCCCCCCC--CcCCccCCCCHHHHHHHHHHHHHCCCCEEEEEC------cCCCccccHH
Confidence 6666432 2666 9999999999985421 111234458999999999999899999999986 6777778888
Q ss_pred HHHHHHHhcC-c-eE-EEeCCCCCHHHHHHHHHcCCCeEecCCCch-HHHHhccCCCCCHHHHHHHHHHHHHcCC-ceee
Q 022946 163 EYVKDIRDMG-M-EV-CCTLGMLEKHQAIELKKAGLTAYNHNLDTS-REFYSKIITTRSYDERLETLKHVREAGI-NVCS 237 (289)
Q Consensus 163 e~i~~ik~~~-~-~i-~~~~g~l~~e~l~~L~~aG~~~v~i~let~-~~~~~~i~~~~~~~~~~~~i~~~~~~Gi-~v~~ 237 (289)
++++.+++.+ + .+ .+|||.+..+.++.|+++|+++|++|+|+. ++.|+++.+..+++++++.|+.+++.|+ .+..
T Consensus 80 ~li~~i~~~~~l~~i~itTNG~ll~~~~~~L~~aGl~~v~ISlDs~~~e~~~~i~~~g~~~~vl~~i~~~~~~Gi~~v~i 159 (329)
T PRK13361 80 QLVARLGKLPGLEELSLTTNGSRLARFAAELADAGLKRLNISLDTLRPELFAALTRNGRLERVIAGIDAAKAAGFERIKL 159 (329)
T ss_pred HHHHHHHhCCCCceEEEEeChhHHHHHHHHHHHcCCCeEEEEeccCCHHHhhhhcCCCCHHHHHHHHHHHHHcCCCceEE
Confidence 9998888653 3 33 567898777899999999999999999999 9999999988899999999999999999 6777
Q ss_pred cEEeecCCCHHHHHHHHHHHhcCCCCCCeeeeccceecCC
Q 022946 238 GGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLAVKG 277 (289)
Q Consensus 238 ~~i~Glget~ed~~~~l~~l~~l~~~~~~v~i~~~~p~pg 277 (289)
.+++--|++.+++.++++++.++ ++ .+.+..|+|..+
T Consensus 160 n~v~~~g~N~~ei~~~~~~~~~~--gi-~~~~ie~mP~g~ 196 (329)
T PRK13361 160 NAVILRGQNDDEVLDLVEFCRER--GL-DIAFIEEMPLGE 196 (329)
T ss_pred EEEEECCCCHHHHHHHHHHHHhc--CC-eEEEEecccCCC
Confidence 66553388999999999999999 45 456788888765
No 71
>cd01335 Radical_SAM Radical SAM superfamily. Enzymes of this family generate radicals by combining a 4Fe-4S cluster and S-adenosylmethionine (SAM) in close proximity. They are characterized by a conserved CxxxCxxC motif, which coordinates the conserved iron-sulfur cluster. Mechanistically, they share the transfer of a single electron from the iron-sulfur cluster to SAM, which leads to its reductive cleavage to methionine and a 5'-deoxyadenosyl radical, which, in turn, abstracts a hydrogen from the appropriately positioned carbon atom. Depending on the enzyme, SAM is consumed during this process or it is restored and reused. Radical SAM enzymes catalyze steps in metabolism, DNA repair, the biosynthesis of vitamins and coenzymes, and the biosynthesis of many antibiotics. Examples are biotin synthase (BioB), lipoyl synthase (LipA), pyruvate formate-lyase (PFL), coproporphyrinogen oxidase (HemN), lysine 2,3-aminomutase (LAM), anaerobic ribonucleotide reductase (ARR), and MoaA, an enzyme o
Probab=99.87 E-value=8.8e-21 Score=155.95 Aligned_cols=177 Identities=31% Similarity=0.530 Sum_probs=138.8
Q ss_pred cCCCCcCCCCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHHcCCcEEEEecccCCCCCCchhHHHHHHHHHHHHhc--Cc
Q 022946 96 TGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDM--GM 173 (289)
Q Consensus 96 t~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~~g~~~i~i~~~~~~~~ge~~~~~~l~e~i~~ik~~--~~ 173 (289)
|++|+++|.||+........ .......+++.+.+......+...+.++|| +|.....+.++++.+++. ++
T Consensus 4 ~~~C~~~C~fC~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~i~~~gg------ep~~~~~~~~~i~~~~~~~~~~ 75 (204)
T cd01335 4 TRGCNLNCGFCSNPASKGRG--PESPPEIEEILDIVLEAKERGVEVVILTGG------EPLLYPELAELLRRLKKELPGF 75 (204)
T ss_pred CCccCCcCCCCCCCCCCCCC--ccccccHHHHHHHHHHHHhcCceEEEEeCC------cCCccHhHHHHHHHHHhhCCCc
Confidence 89999999999987543211 111112245666666666677777777653 343334788888887755 55
Q ss_pred eEE-EeCC-CCCHHHHHHHHHcCCCeEecCCCch-HHHHhccC-CCCCHHHHHHHHHHHHHcCCceeecEEeec-CCCHH
Q 022946 174 EVC-CTLG-MLEKHQAIELKKAGLTAYNHNLDTS-REFYSKII-TTRSYDERLETLKHVREAGINVCSGGIIGL-GEAEE 248 (289)
Q Consensus 174 ~i~-~~~g-~l~~e~l~~L~~aG~~~v~i~let~-~~~~~~i~-~~~~~~~~~~~i~~~~~~Gi~v~~~~i~Gl-get~e 248 (289)
.+. .+++ .++++.++.|.++|++.+.+++|+. ++.++.+. +..++++++++++.+++.|+.+.+.+++|. +++.+
T Consensus 76 ~~~i~T~~~~~~~~~~~~l~~~g~~~i~i~le~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~g~~~~~~~ 155 (204)
T cd01335 76 EISIETNGTLLTEELLKELKELGLDGVGVSLDSGDEEVADKIRGSGESFKERLEALKELREAGLGLSTTLLVGLGDEDEE 155 (204)
T ss_pred eEEEEcCcccCCHHHHHHHHhCCCceEEEEcccCCHHHHHHHhcCCcCHHHHHHHHHHHHHcCCCceEEEEEecCCChhH
Confidence 542 2344 4589999999999999999999999 99999888 677999999999999999999999999999 66668
Q ss_pred HHHHHHHHHhcCCCCCCeeeeccceecCCCCCC
Q 022946 249 DRVGLLHTLATLPTHPESVPINALLAVKGTPLQ 281 (289)
Q Consensus 249 d~~~~l~~l~~l~~~~~~v~i~~~~p~pgTpl~ 281 (289)
++.++++++.++. ++..+.+..|.|.|||||+
T Consensus 156 ~~~~~~~~l~~~~-~~~~~~~~~~~p~~~t~~~ 187 (204)
T cd01335 156 DDLEELELLAEFR-SPDRVSLFRLLPEEGTPLE 187 (204)
T ss_pred HHHHHHHHHHhhc-CcchhhhhhhcccCCCeee
Confidence 9999999999883 2789999999999999998
No 72
>PRK06294 coproporphyrinogen III oxidase; Provisional
Probab=99.87 E-value=5.2e-21 Score=172.31 Aligned_cols=179 Identities=16% Similarity=0.183 Sum_probs=136.2
Q ss_pred cCCCCcCCCCCCCCCCCCCCCCCcCCC-CHHHHHHH-HHHHHH----cCCcEEEEecccCCCCCCchhHHHHHHHHHHHH
Q 022946 96 TGGCSEDCSYCPQSSRYDTGVKGQKLM-TKDAVMQA-AQKAKE----AGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIR 169 (289)
Q Consensus 96 t~~C~~~C~fC~~~~~~~~~~~~~~~~-~~eei~~~-~~~~~~----~g~~~i~i~~~~~~~~ge~~~~~~l~e~i~~ik 169 (289)
-+.|..+|.||.+..... ...... -.+.++++ ++.... ..++.|.|+||.. +.- ..+.+.++++.++
T Consensus 13 IPFC~~~C~yC~f~~~~~---~~~~~~~y~~~l~~E~~~~~~~~~~~~~i~~iy~GGGTP-s~l---~~~~l~~ll~~i~ 85 (370)
T PRK06294 13 IPFCTKKCHYCSFYTIPY---KEESVSLYCNAVLKEGLKKLAPLRCSHFIDTVFFGGGTP-SLV---PPALIQDILKTLE 85 (370)
T ss_pred eCCccCcCCCCcCcccCC---CccCHHHHHHHHHHHHHHHhhhhccCCceeEEEECCCcc-ccC---CHHHHHHHHHHHH
Confidence 579999999999865311 111100 12333333 322222 2356677766432 222 2344555555554
Q ss_pred h---cCceEEEeCCCCCHHHHHHHHHcCCCeEecCCCch-HHHHhccCCCCCHHHHHHHHHHHHHcCCc-eeecEEeec-
Q 022946 170 D---MGMEVCCTLGMLEKHQAIELKKAGLTAYNHNLDTS-REFYSKIITTRSYDERLETLKHVREAGIN-VCSGGIIGL- 243 (289)
Q Consensus 170 ~---~~~~i~~~~g~l~~e~l~~L~~aG~~~v~i~let~-~~~~~~i~~~~~~~~~~~~i~~~~~~Gi~-v~~~~i~Gl- 243 (289)
. ..+.+.+++..++.+.++.|+++|++++++|+||+ +++++.+.+.++.++++++++.+++.|+. ++.++|+|+
T Consensus 86 ~~~~~eit~E~~P~~~~~~~l~~l~~~G~nrislGvQS~~~~~L~~l~R~~~~~~~~~ai~~~~~~g~~~v~~Dli~GlP 165 (370)
T PRK06294 86 APHATEITLEANPENLSESYIRALALTGINRISIGVQTFDDPLLKLLGRTHSSSKAIDAVQECSEHGFSNLSIDLIYGLP 165 (370)
T ss_pred hCCCCeEEEEeCCCCCCHHHHHHHHHCCCCEEEEccccCCHHHHHHcCCCCCHHHHHHHHHHHHHcCCCeEEEEeecCCC
Confidence 2 23445677888999999999999999999999999 99999999999999999999999999996 999999999
Q ss_pred CCCHHHHHHHHHHHhcCCCCCCeeeeccceecCCCCCCCC
Q 022946 244 GEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQ 283 (289)
Q Consensus 244 get~ed~~~~l~~l~~l~~~~~~v~i~~~~p~pgTpl~~~ 283 (289)
|+|.+++.++++.+.++ +++.+.++.+.|.||||++..
T Consensus 166 gqt~~~~~~~l~~~~~l--~~~~is~y~l~~~~gT~l~~~ 203 (370)
T PRK06294 166 TQSLSDFIVDLHQAITL--PITHISLYNLTIDPHTSFYKH 203 (370)
T ss_pred CCCHHHHHHHHHHHHcc--CCCeEEEeeeEecCCChHHHH
Confidence 99999999999999999 699999999999999998763
No 73
>TIGR01212 radical SAM protein, TIGR01212 family. This uncharacterized protein family shows significant similarity to TIGR01211, a longer protein that is a histone acetyltransferase at its C-terminus and is a subunit of RNA polymerase II (in yeast). This family lacks the GNAT acetyltransferase domain.
Probab=99.87 E-value=9.9e-21 Score=165.79 Aligned_cols=199 Identities=21% Similarity=0.268 Sum_probs=144.1
Q ss_pred HHHHhhhCCCeeEEeEeeccccCCCCc--------CCCCCCCCCCCCCCCC--CcCCCCH-HHHHHHHHHHHHcCCcEEE
Q 022946 75 QVHRHAHNFREVQQCTLLSIKTGGCSE--------DCSYCPQSSRYDTGVK--GQKLMTK-DAVMQAAQKAKEAGSTRFC 143 (289)
Q Consensus 75 ~~~r~~~~g~~~~~~~~i~~~t~~C~~--------~C~fC~~~~~~~~~~~--~~~~~~~-eei~~~~~~~~~~g~~~i~ 143 (289)
...|+++ |.+|+=- .|+. .-.||+ .|.||+..... .... ..+..++ +++.+.++.....+...+.
T Consensus 7 ~~~~~~~-g~~v~k~-~~~~-g~~cpnrdg~~~~~gC~FC~~~~~~-~~~~~~~~~~~~i~~qi~~~~~~~~~~~~~~iy 82 (302)
T TIGR01212 7 DYLKERY-GQKVFKI-TLHG-GFSCPNRDGTKGRGGCTFCNDASRP-IFADEYTQARIPIKEQIKKQMKKYKKDKKFIAY 82 (302)
T ss_pred HHHHHHc-CCceEEe-ecCC-CCCCCCCCCCCCCCCcccCCCCCCc-cccccccccCCCHHHHHHHHHHHhhccCEEEEE
Confidence 3345564 7777632 2554 778998 69999875321 1110 1122343 3344444433333322356
Q ss_pred EecccCCCCCCchhHHHHHHHHHHHHhc----CceEEEeCCCCCHHHHHHHH---HcCC-CeEecCCCch-HHHHhccCC
Q 022946 144 MGAAWRDTIGRKTNFNQILEYVKDIRDM----GMEVCCTLGMLEKHQAIELK---KAGL-TAYNHNLDTS-REFYSKIIT 214 (289)
Q Consensus 144 i~~~~~~~~ge~~~~~~l~e~i~~ik~~----~~~i~~~~g~l~~e~l~~L~---~aG~-~~v~i~let~-~~~~~~i~~ 214 (289)
|+|+. ++.. ..+.+.++++.+++. ++.+.+++..++++.++.|+ ++|+ .++.+|+||. +++++.+++
T Consensus 83 f~ggt-~t~l---~~~~L~~l~~~i~~~~~~~~isi~trpd~l~~e~l~~L~~l~~~G~~~~i~lGlQS~~d~~L~~i~R 158 (302)
T TIGR01212 83 FQAYT-NTYA---PVEVLKEMYEQALSYDDVVGLSVGTRPDCVPDEVLDLLAEYVERGYEVWVELGLQTAHDKTLKKINR 158 (302)
T ss_pred EECCC-cCCC---CHHHHHHHHHHHhCCCCEEEEEEEecCCcCCHHHHHHHHHhhhCCceEEEEEccCcCCHHHHHHHcC
Confidence 66543 4433 445666666665533 34455667788888776666 4599 5799999999 999999999
Q ss_pred CCCHHHHHHHHHHHHHcCCceeecEEeec-CCCHHHHHHHHHHHhcCCCCCCeeeeccceecCCCCCCCC
Q 022946 215 TRSYDERLETLKHVREAGINVCSGGIIGL-GEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQ 283 (289)
Q Consensus 215 ~~~~~~~~~~i~~~~~~Gi~v~~~~i~Gl-get~ed~~~~l~~l~~l~~~~~~v~i~~~~p~pgTpl~~~ 283 (289)
+++.++++++++.++++|+.+++++|+|+ |||.+++.++++++.++ +++.+.++.+.|.|||||++.
T Consensus 159 g~t~~~~~~ai~~l~~~gi~v~~~lI~GlPget~e~~~~t~~~l~~l--~~d~i~i~~l~~~pgT~L~~~ 226 (302)
T TIGR01212 159 GHDFACYVDAVKRARKRGIKVCSHVILGLPGEDREEMMETAKIVSLL--DVDGIKIHPLHVVKGTKMAKM 226 (302)
T ss_pred cChHHHHHHHHHHHHHcCCEEEEeEEECCCCCCHHHHHHHHHHHHhc--CCCEEEEEEEEecCCCHHHHH
Confidence 99999999999999999999999999999 99999999999999999 689999999999999999874
No 74
>PRK08898 coproporphyrinogen III oxidase; Provisional
Probab=99.87 E-value=9.6e-21 Score=171.97 Aligned_cols=186 Identities=12% Similarity=0.146 Sum_probs=140.1
Q ss_pred cCCCCcCCCCCCCCCCCCCCCCCcC-CCCHHHHHHHHHHHHH----cCCcEEEEecccCCCCCCchhHHHHHHHHHHHHh
Q 022946 96 TGGCSEDCSYCPQSSRYDTGVKGQK-LMTKDAVMQAAQKAKE----AGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRD 170 (289)
Q Consensus 96 t~~C~~~C~fC~~~~~~~~~~~~~~-~~~~eei~~~~~~~~~----~g~~~i~i~~~~~~~~ge~~~~~~l~e~i~~ik~ 170 (289)
-+.|..+|.||.+.+.......... ..-.+.+.++++.... ..++.|.|+||... .-.+..+.++++.++..-.
T Consensus 26 IPFC~~~C~yC~f~~~~~~~~~~~~~~~Y~~~l~~ei~~~~~~~~~~~i~siy~GGGTPs-~L~~~~L~~ll~~i~~~~~ 104 (394)
T PRK08898 26 FPWCVRKCPYCDFNSHEWKDGGAIPEAAYLDALRADLEQALPLVWGRQVHTVFIGGGTPS-LLSAAGLDRLLSDVRALLP 104 (394)
T ss_pred eCCccCcCCCCCCcccccCCCCccCHHHHHHHHHHHHHHHHHhccCCceeEEEECCCCcC-CCCHHHHHHHHHHHHHhCC
Confidence 5799999999998754221110000 0124556666654432 23667877765432 2223344444444433221
Q ss_pred c----CceEEEeCCCCCHHHHHHHHHcCCCeEecCCCch-HHHHhccCCCCCHHHHHHHHHHHHHcCCceeecEEeec-C
Q 022946 171 M----GMEVCCTLGMLEKHQAIELKKAGLTAYNHNLDTS-REFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGL-G 244 (289)
Q Consensus 171 ~----~~~i~~~~g~l~~e~l~~L~~aG~~~v~i~let~-~~~~~~i~~~~~~~~~~~~i~~~~~~Gi~v~~~~i~Gl-g 244 (289)
. .+.+.++++.++.+.++.|+++|++++++|+||+ +++++.+.+.++.++..++++.+++.+..++.++|+|+ |
T Consensus 105 ~~~~~eit~E~~p~~~~~e~L~~l~~~GvnrisiGvQS~~~~~L~~l~R~~~~~~~~~~i~~~~~~~~~v~~dlI~GlPg 184 (394)
T PRK08898 105 LDPDAEITLEANPGTFEAEKFAQFRASGVNRLSIGIQSFNDAHLKALGRIHDGAEARAAIEIAAKHFDNFNLDLMYALPG 184 (394)
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHcCCCeEEEecccCCHHHHHHhCCCCCHHHHHHHHHHHHHhCCceEEEEEcCCCC
Confidence 1 2345667788999999999999999999999999 99999999999999999999999998888999999999 9
Q ss_pred CCHHHHHHHHHHHhcCCCCCCeeeeccceecCCCCCCCCC
Q 022946 245 EAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQK 284 (289)
Q Consensus 245 et~ed~~~~l~~l~~l~~~~~~v~i~~~~p~pgTpl~~~~ 284 (289)
+|.+++.++++.+.++ +++.+.++.|.+.|||||++..
T Consensus 185 qt~~~~~~~l~~~~~l--~p~~is~y~l~~~~gT~l~~~~ 222 (394)
T PRK08898 185 QTLDEALADVETALAF--GPPHLSLYHLTLEPNTLFAKFP 222 (394)
T ss_pred CCHHHHHHHHHHHHhc--CCCEEEEeeeEECCCChhhhcc
Confidence 9999999999999999 6999999999999999998753
No 75
>TIGR02666 moaA molybdenum cofactor biosynthesis protein A, bacterial. The model for this family describes molybdenum cofactor biosynthesis protein A, or MoaA, as found in bacteria. It does not include the family of probable functional equivalent proteins from the archaea. MoaA works together with MoaC to synthesize precursor Z from guanine.
Probab=99.87 E-value=2.2e-20 Score=166.54 Aligned_cols=187 Identities=20% Similarity=0.272 Sum_probs=149.4
Q ss_pred CCeeEEeEeeccccCCCCcCCCCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHHcCCcEEEEecccCCCCCCchhHHHHH
Q 022946 83 FREVQQCTLLSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQIL 162 (289)
Q Consensus 83 g~~~~~~~~i~~~t~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~~g~~~i~i~~~~~~~~ge~~~~~~l~ 162 (289)
|+.+..- .+++ |++||++|.||...............++.+++.+.++.+.+.|++.|.|+| |||+...++.
T Consensus 6 gr~~~~l-~i~v-T~~CNl~C~yC~~~~~~~~~~~~~~~ls~eei~~~i~~~~~~gv~~V~ltG------GEPll~~~l~ 77 (334)
T TIGR02666 6 GRRIDYL-RISV-TDRCNLRCVYCMPEGGGLDFLPKEELLTFEEIERLVRAFVGLGVRKVRLTG------GEPLLRKDLV 77 (334)
T ss_pred CCccCeE-EEEe-cCccCcCCCCCCCCcCCCCcCCccCCCCHHHHHHHHHHHHHCCCCEEEEEC------ccccccCCHH
Confidence 6665432 3566 999999999998763111112234558999999999999999999999987 5666667788
Q ss_pred HHHHHHHh-cCc-eE-EEeCCCCCHHHHHHHHHcCCCeEecCCCch-HHHHhccCC-CCCHHHHHHHHHHHHHcCCc-ee
Q 022946 163 EYVKDIRD-MGM-EV-CCTLGMLEKHQAIELKKAGLTAYNHNLDTS-REFYSKIIT-TRSYDERLETLKHVREAGIN-VC 236 (289)
Q Consensus 163 e~i~~ik~-~~~-~i-~~~~g~l~~e~l~~L~~aG~~~v~i~let~-~~~~~~i~~-~~~~~~~~~~i~~~~~~Gi~-v~ 236 (289)
++++.+++ .++ .+ .+|||.+..+.++.|+++|++.|.+|+|+. ++.++.+.+ +.++++++++|+.++++|+. +.
T Consensus 78 ~li~~i~~~~gi~~v~itTNG~ll~~~~~~L~~~gl~~v~ISld~~~~~~~~~i~~~~~~~~~vl~~i~~l~~~G~~~v~ 157 (334)
T TIGR02666 78 ELVARLAALPGIEDIALTTNGLLLARHAKDLKEAGLKRVNVSLDSLDPERFAKITRRGGRLEQVLAGIDAALAAGLEPVK 157 (334)
T ss_pred HHHHHHHhcCCCCeEEEEeCchhHHHHHHHHHHcCCCeEEEecccCCHHHhheeCCCCCCHHHHHHHHHHHHHcCCCcEE
Confidence 88888775 466 44 457898878899999999999999999999 999999985 56999999999999999997 88
Q ss_pred ecEEeecCCCHHHHHHHHHHHhcCCCCCCeeeeccceecCCCCC
Q 022946 237 SGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPL 280 (289)
Q Consensus 237 ~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~i~~~~p~pgTpl 280 (289)
..+++.-|.+.+++.++++++.+++ . .+.+..|+|..++.-
T Consensus 158 in~vv~~g~n~~ei~~l~~~~~~~g--v-~~~~ie~mp~~~~~~ 198 (334)
T TIGR02666 158 LNTVVMRGVNDDEIVDLAEFAKERG--V-TLRFIELMPLGEGNG 198 (334)
T ss_pred EEEEEeCCCCHHHHHHHHHHHHhcC--C-eEEEEeccCCCCCcc
Confidence 7776655889999999999999983 4 477888899877643
No 76
>PRK08208 coproporphyrinogen III oxidase; Validated
Probab=99.87 E-value=9.4e-21 Score=173.91 Aligned_cols=185 Identities=16% Similarity=0.222 Sum_probs=142.2
Q ss_pred cCCCCcCCCCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHHc----CCcEEEEecccCCCCCCchhHHHHHHHHHHHHhc
Q 022946 96 TGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEA----GSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDM 171 (289)
Q Consensus 96 t~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~~----g~~~i~i~~~~~~~~ge~~~~~~l~e~i~~ik~~ 171 (289)
.+.|+.+|.||.+....... ........+.++++++...+. .+..+.|+||. ++.-.+..+.++++.++.....
T Consensus 46 IPFC~~~C~yC~~~~~~~~~-~~~~~~y~~~L~~Ei~~~~~~~~~~~i~~i~~GGGT-Ps~l~~~~l~~Ll~~i~~~~~~ 123 (430)
T PRK08208 46 IPFCEMRCGFCNLFTRTGAD-AEFIDSYLDALIRQAEQVAEALAPARFASFAVGGGT-PTLLNAAELEKLFDSVERVLGV 123 (430)
T ss_pred eCCccCcCCCCCCccccCCc-cchHHHHHHHHHHHHHHHHHHcCCCceeEEEEcCCc-cccCCHHHHHHHHHHHHHhCCC
Confidence 47899999999987542211 011112356777777655432 25567776543 3222234456666666543322
Q ss_pred ---Cce--EEEeCCCCCHHHHHHHHHcCCCeEecCCCch-HHHHhccCCCCCHHHHHHHHHHHHHcCCc-eeecEEeec-
Q 022946 172 ---GME--VCCTLGMLEKHQAIELKKAGLTAYNHNLDTS-REFYSKIITTRSYDERLETLKHVREAGIN-VCSGGIIGL- 243 (289)
Q Consensus 172 ---~~~--i~~~~g~l~~e~l~~L~~aG~~~v~i~let~-~~~~~~i~~~~~~~~~~~~i~~~~~~Gi~-v~~~~i~Gl- 243 (289)
+.+ +.+++..++++.++.|+++|+++|++|+||+ +++++.+.++++.++++++++.++++|+. ++.++|+|+
T Consensus 124 ~~~~~eitiE~~P~~lt~e~l~~l~~~G~~rvslGvQS~~~~~L~~l~R~~~~~~~~~ai~~l~~~g~~~i~~dlI~GlP 203 (430)
T PRK08208 124 DLGNIPKSVETSPATTTAEKLALLAARGVNRLSIGVQSFHDSELHALHRPQKRADVHQALEWIRAAGFPILNIDLIYGIP 203 (430)
T ss_pred CCCCceEEEEeCcCcCCHHHHHHHHHcCCCEEEEecccCCHHHHHHhCCCCCHHHHHHHHHHHHHcCCCeEEEEeecCCC
Confidence 233 4566778999999999999999999999999 99999999999999999999999999997 689999999
Q ss_pred CCCHHHHHHHHHHHhcCCCCCCeeeeccceecCCCCCCCCC
Q 022946 244 GEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQK 284 (289)
Q Consensus 244 get~ed~~~~l~~l~~l~~~~~~v~i~~~~p~pgTpl~~~~ 284 (289)
++|.+++.++++++.++ +++.+.++.+.+.|||++....
T Consensus 204 ~qt~e~~~~~l~~~~~l--~~~~is~y~L~~~~~T~l~~~~ 242 (430)
T PRK08208 204 GQTHASWMESLDQALVY--RPEELFLYPLYVRPLTGLGRRA 242 (430)
T ss_pred CCCHHHHHHHHHHHHhC--CCCEEEEccccccCCCccchhc
Confidence 99999999999999999 6999999999999999998754
No 77
>COG2896 MoaA Molybdenum cofactor biosynthesis enzyme [Coenzyme metabolism]
Probab=99.86 E-value=2.3e-20 Score=161.06 Aligned_cols=183 Identities=22% Similarity=0.327 Sum_probs=151.5
Q ss_pred CCeeEEeEeeccccCCCCcCCCCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHHcCCcEEEEecccCCCCCCchhHHHHH
Q 022946 83 FREVQQCTLLSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQIL 162 (289)
Q Consensus 83 g~~~~~~~~i~~~t~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~~g~~~i~i~~~~~~~~ge~~~~~~l~ 162 (289)
|..+..-. +++ |..||++|.||.....+ ....+...+++|||...++.+.+.|++.|-|+| |||+...++.
T Consensus 7 gR~~~~LR-iSv-TdrCNfrC~YCm~eg~~-~~~~~~~~Ls~eei~~~~~~~~~~Gv~kvRlTG------GEPllR~dl~ 77 (322)
T COG2896 7 GRPVRYLR-ISV-TDRCNFRCTYCMPEGPL-AFLPKEELLSLEEIRRLVRAFAELGVEKVRLTG------GEPLLRKDLD 77 (322)
T ss_pred CCEeceEE-EEE-ecCcCCcccccCCCCCc-ccCcccccCCHHHHHHHHHHHHHcCcceEEEeC------CCchhhcCHH
Confidence 55554322 555 99999999999875312 222333468999999999999999999999987 7899999999
Q ss_pred HHHHHHHhcCce-E-EEeCCCCCHHHHHHHHHcCCCeEecCCCch-HHHHhccCCCCCHHHHHHHHHHHHHcCCc-eeec
Q 022946 163 EYVKDIRDMGME-V-CCTLGMLEKHQAIELKKAGLTAYNHNLDTS-REFYSKIITTRSYDERLETLKHVREAGIN-VCSG 238 (289)
Q Consensus 163 e~i~~ik~~~~~-i-~~~~g~l~~e~l~~L~~aG~~~v~i~let~-~~~~~~i~~~~~~~~~~~~i~~~~~~Gi~-v~~~ 238 (289)
++++.+++.++. + .+|||.+....+..|++||+++|++|++|. ++.|.++.+...++++++.|+.+.++|+. |..+
T Consensus 78 eIi~~l~~~~~~~islTTNG~~L~~~a~~Lk~AGl~rVNVSLDsld~e~f~~IT~~~~~~~Vl~GI~~A~~~Gl~pVKlN 157 (322)
T COG2896 78 EIIARLARLGIRDLSLTTNGVLLARRAADLKEAGLDRVNVSLDSLDPEKFRKITGRDRLDRVLEGIDAAVEAGLTPVKLN 157 (322)
T ss_pred HHHHHHhhcccceEEEecchhhHHHHHHHHHHcCCcEEEeecccCCHHHHHHHhCCCcHHHHHHHHHHHHHcCCCceEEE
Confidence 999999876543 3 466999999999999999999999999999 99999999877899999999999999995 7777
Q ss_pred EEeecCCCHHHHHHHHHHHhcCCCCCCeeeeccceecCC
Q 022946 239 GIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLAVKG 277 (289)
Q Consensus 239 ~i~Glget~ed~~~~l~~l~~l~~~~~~v~i~~~~p~pg 277 (289)
+++-=|-+.+++.+++++++..+ ..+.|..|+|...
T Consensus 158 ~Vv~kgvNd~ei~~l~e~~~~~~---~~lrfIE~m~~g~ 193 (322)
T COG2896 158 TVLMKGVNDDEIEDLLEFAKERG---AQLRFIELMPLGE 193 (322)
T ss_pred EEEecCCCHHHHHHHHHHHhhcC---CceEEEEEeecCc
Confidence 76633678899999999999983 3788888888764
No 78
>PRK06582 coproporphyrinogen III oxidase; Provisional
Probab=99.86 E-value=1.2e-20 Score=170.57 Aligned_cols=183 Identities=14% Similarity=0.145 Sum_probs=139.2
Q ss_pred cCCCCcCCCCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHH----cCCcEEEEecccCCCCCCchhHHHHHHHHHHHHhc
Q 022946 96 TGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKE----AGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDM 171 (289)
Q Consensus 96 t~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~----~g~~~i~i~~~~~~~~ge~~~~~~l~e~i~~ik~~ 171 (289)
-+.|..+|.||.+....... .....-.+.+.++++...+ ..++.|.|+||.. +.-.+..+..+++.++.....
T Consensus 18 iPFC~~~C~yC~f~~~~~~~--~~~~~Y~~aL~~Ei~~~~~~~~~~~i~tiy~GGGTP-s~l~~~~l~~ll~~i~~~~~~ 94 (390)
T PRK06582 18 WPFCLSKCPYCDFNSHVAST--IDHNQWLKSYEKEIEYFKDIIQNKYIKSIFFGGGTP-SLMNPVIVEGIINKISNLAII 94 (390)
T ss_pred eCCCcCcCCCCCCeeccCCC--CCHHHHHHHHHHHHHHHHHHccCCceeEEEECCCcc-ccCCHHHHHHHHHHHHHhCCC
Confidence 58999999999987532111 1000012334444443332 2367787776543 222334445555555443211
Q ss_pred ----CceEEEeCCCCCHHHHHHHHHcCCCeEecCCCch-HHHHhccCCCCCHHHHHHHHHHHHHcCCceeecEEeec-CC
Q 022946 172 ----GMEVCCTLGMLEKHQAIELKKAGLTAYNHNLDTS-REFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGL-GE 245 (289)
Q Consensus 172 ----~~~i~~~~g~l~~e~l~~L~~aG~~~v~i~let~-~~~~~~i~~~~~~~~~~~~i~~~~~~Gi~v~~~~i~Gl-ge 245 (289)
.+.+.+++..++.+.++.|+++|+++|++|+||+ +++++.+.+.++.++.+++++.+++.+..++.++|+|+ |+
T Consensus 95 ~~~~eitiE~nP~~~~~e~l~~l~~~GvnRiSiGvQS~~d~~L~~lgR~h~~~~~~~ai~~~~~~~~~v~~DlI~GlPgq 174 (390)
T PRK06582 95 DNQTEITLETNPTSFETEKFKAFKLAGINRVSIGVQSLKEDDLKKLGRTHDCMQAIKTIEAANTIFPRVSFDLIYARSGQ 174 (390)
T ss_pred CCCCEEEEEeCCCcCCHHHHHHHHHCCCCEEEEECCcCCHHHHHHcCCCCCHHHHHHHHHHHHHhCCcEEEEeecCCCCC
Confidence 2445677888999999999999999999999999 99999999999999999999999999778999999999 99
Q ss_pred CHHHHHHHHHHHhcCCCCCCeeeeccceecCCCCCCCC
Q 022946 246 AEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQ 283 (289)
Q Consensus 246 t~ed~~~~l~~l~~l~~~~~~v~i~~~~p~pgTpl~~~ 283 (289)
|.+++.++++.+.++ +|+.+.++.+.+.|||||++.
T Consensus 175 t~e~~~~~l~~~~~l--~p~his~y~L~i~~gT~l~~~ 210 (390)
T PRK06582 175 TLKDWQEELKQAMQL--ATSHISLYQLTIEKGTPFYKL 210 (390)
T ss_pred CHHHHHHHHHHHHhc--CCCEEEEecCEEccCChHHHH
Confidence 999999999999999 699999999999999999763
No 79
>TIGR02668 moaA_archaeal probable molybdenum cofactor biosynthesis protein A, archaeal. This model describes an archaeal family related, and predicted to be functionally equivalent, to molybdenum cofactor biosynthesis protein A (MoaA) of bacteria (see TIGR02666).
Probab=99.86 E-value=5.6e-20 Score=161.83 Aligned_cols=181 Identities=24% Similarity=0.345 Sum_probs=146.6
Q ss_pred CCeeEEeEeeccccCCCCcCCCCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHHcCCcEEEEecccCCCCCCchhHHHHH
Q 022946 83 FREVQQCTLLSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQIL 162 (289)
Q Consensus 83 g~~~~~~~~i~~~t~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~~g~~~i~i~~~~~~~~ge~~~~~~l~ 162 (289)
|+.+... .+++ |++||++|.||...... ......++.|++.+.++.+...|++.|.|+| |||....++.
T Consensus 6 gr~~~~l-~i~v-T~~CNl~C~yC~~~~~~---~~~~~~ls~eei~~~i~~~~~~gi~~I~~tG------GEPll~~~l~ 74 (302)
T TIGR02668 6 GRPVTSL-RISV-TDRCNLSCFYCHMEGED---RSGGNELSPEEIERIVRVASEFGVRKVKITG------GEPLLRKDLI 74 (302)
T ss_pred CCccCeE-EEEE-cccccCCCCCCCccccC---CCccCcCCHHHHHHHHHHHHHcCCCEEEEEC------cccccccCHH
Confidence 5555332 3566 99999999999875321 1223458999999999888889999999976 5676667788
Q ss_pred HHHHHHHhcCc-eE-EEeCCCCCHHHHHHHHHcCCCeEecCCCch-HHHHhccCCCCCHHHHHHHHHHHHHcCCc-eeec
Q 022946 163 EYVKDIRDMGM-EV-CCTLGMLEKHQAIELKKAGLTAYNHNLDTS-REFYSKIITTRSYDERLETLKHVREAGIN-VCSG 238 (289)
Q Consensus 163 e~i~~ik~~~~-~i-~~~~g~l~~e~l~~L~~aG~~~v~i~let~-~~~~~~i~~~~~~~~~~~~i~~~~~~Gi~-v~~~ 238 (289)
++++.+++.++ .+ .+|||.+..+.++.|+++|++.|.+|+|+. ++.++.+.++.++++++++|+.+++.|+. +...
T Consensus 75 ~iv~~l~~~g~~~v~i~TNG~ll~~~~~~l~~~g~~~v~iSld~~~~~~~~~i~~~~~~~~vl~~i~~~~~~G~~~v~i~ 154 (302)
T TIGR02668 75 EIIRRIKDYGIKDVSMTTNGILLEKLAKKLKEAGLDRVNVSLDTLDPEKYKKITGRGALDRVIEGIESAVDAGLTPVKLN 154 (302)
T ss_pred HHHHHHHhCCCceEEEEcCchHHHHHHHHHHHCCCCEEEEEecCCCHHHhhhccCCCcHHHHHHHHHHHHHcCCCcEEEE
Confidence 88888887776 44 467898778899999999999999999999 99999999888999999999999999986 7776
Q ss_pred EEeecCCCHHHHHHHHHHHhcCCCCCCeeeeccceecCC
Q 022946 239 GIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLAVKG 277 (289)
Q Consensus 239 ~i~Glget~ed~~~~l~~l~~l~~~~~~v~i~~~~p~pg 277 (289)
+++--|++.+++.++++++.+++ . .+.+..++|...
T Consensus 155 ~v~~~g~n~~ei~~~~~~~~~~g--~-~~~~ie~~p~~~ 190 (302)
T TIGR02668 155 MVVLKGINDNEIPDMVEFAAEGG--A-ILQLIELMPPGE 190 (302)
T ss_pred EEEeCCCCHHHHHHHHHHHHhcC--C-EEEEEEEeECCC
Confidence 66544799999999999999983 3 477888888653
No 80
>TIGR01210 conserved hypothetical protein TIGR01210. This family of exclusively archaeal proteins has no characterized close homologs. Several rounds of PSI-BLAST with a stringent cutoff of 1e-8 shows apparent similarity of the central region of this family to the central regions of the oxygen-independent coproporphyrinogen III dehydrogenase HemN and to other enzymes.
Probab=99.85 E-value=1.2e-19 Score=159.47 Aligned_cols=181 Identities=17% Similarity=0.189 Sum_probs=134.5
Q ss_pred EeeccccCCCCc----CCCCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHH-cCCcE----E-EEeccc-CCCCCCchhH
Q 022946 90 TLLSIKTGGCSE----DCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKE-AGSTR----F-CMGAAW-RDTIGRKTNF 158 (289)
Q Consensus 90 ~~i~~~t~~C~~----~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~-~g~~~----i-~i~~~~-~~~~ge~~~~ 158 (289)
.+|.. |+||++ +|.||++... .++..+++.|.+.++.+.+ .+... + .+.++. .++.- ...
T Consensus 17 ~~i~~-srGC~~~~~g~C~FC~~~~~------~~r~~s~e~i~~~i~~~~~~~~~~~~~~~ikif~sgsf~D~~~--~~~ 87 (313)
T TIGR01210 17 TIILR-TRGCYWAREGGCYMCGYLAD------SSPEVTEENLINQFDEAIEKYKEKIKDFVIKIFTSGSFLDDRE--VPK 87 (313)
T ss_pred EEEEe-CCCCCCCCCCcCccCCCCCC------CCCCCChhHHHHHHHHHHHHhhcccccEEEEEecCCCcCCcCc--CCH
Confidence 44555 999999 5999976532 1123588999999887764 33221 1 233321 11110 123
Q ss_pred HHHHHHHHHHHhc----CceEEEeCCCCCHHHHHHHHHcCCC-eEecCCCch-HHHHh-ccCCCCCHHHHHHHHHHHHHc
Q 022946 159 NQILEYVKDIRDM----GMEVCCTLGMLEKHQAIELKKAGLT-AYNHNLDTS-REFYS-KIITTRSYDERLETLKHVREA 231 (289)
Q Consensus 159 ~~l~e~i~~ik~~----~~~i~~~~g~l~~e~l~~L~~aG~~-~v~i~let~-~~~~~-~i~~~~~~~~~~~~i~~~~~~ 231 (289)
+.+.++++.+++. .+.+.++...++++.++.|+++|++ +|.+|+||+ +++++ .++++++.++++++++.++++
T Consensus 88 ~~~~~i~~~l~~~~~~~~i~~esrpd~i~~e~L~~l~~aG~~~~v~iG~ES~~d~~L~~~inKg~t~~~~~~ai~~~~~~ 167 (313)
T TIGR01210 88 ETRNYIFEKIAQRDNLKEVVVESRPEFIDEEKLEELRKIGVNVEVAVGLETANDRIREKSINKGSTFEDFIRAAELARKY 167 (313)
T ss_pred HHHHHHHHHHHhcCCcceEEEEeCCCcCCHHHHHHHHHcCCCEEEEEecCcCCHHHHHHhhCCCCCHHHHHHHHHHHHHc
Confidence 3444555555433 2345566778999999999999998 899999999 99995 799999999999999999999
Q ss_pred CCceeecEEeec-C----CCHHHHHHHHHHHhcCCCCCCeeeeccceecCCCCCCC
Q 022946 232 GINVCSGGIIGL-G----EAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQD 282 (289)
Q Consensus 232 Gi~v~~~~i~Gl-g----et~ed~~~~l~~l~~l~~~~~~v~i~~~~p~pgTpl~~ 282 (289)
|+.+..++|+|+ + |+.+++.++++++..+ + +.+.++++.|.|||+|+.
T Consensus 168 Gi~v~~~~i~G~P~~se~ea~ed~~~ti~~~~~l--~-~~vs~~~l~v~~gT~l~~ 220 (313)
T TIGR01210 168 GAGVKAYLLFKPPFLSEKEAIADMISSIRKCIPV--T-DTVSINPTNVQKGTLVEF 220 (313)
T ss_pred CCcEEEEEEecCCCCChhhhHHHHHHHHHHHHhc--C-CcEEEECCEEeCCCHHHH
Confidence 999999999998 5 4556777888888888 5 899999999999998764
No 81
>PRK00164 moaA molybdenum cofactor biosynthesis protein A; Reviewed
Probab=99.85 E-value=1.1e-19 Score=161.95 Aligned_cols=184 Identities=18% Similarity=0.265 Sum_probs=146.3
Q ss_pred CCeeEEeEeeccccCCCCcCCCCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHHcCCcEEEEecccCCCCCCchhHHHHH
Q 022946 83 FREVQQCTLLSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQIL 162 (289)
Q Consensus 83 g~~~~~~~~i~~~t~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~~g~~~i~i~~~~~~~~ge~~~~~~l~ 162 (289)
|+.+..- .|++ |.+||++|.||...... ........++.+++.+.++.+.+.|++.|.|+| |||....++.
T Consensus 13 ~r~~~~l-~i~v-T~~Cnl~C~yC~~~~~~-~~~~~~~~ls~eei~~~i~~~~~~gi~~I~~tG------GEPll~~~l~ 83 (331)
T PRK00164 13 GRKFTYL-RISV-TDRCNFRCTYCMPEGYL-PFLPKEELLSLEEIERLVRAFVALGVRKVRLTG------GEPLLRKDLE 83 (331)
T ss_pred CCccCeE-EEEE-cCCcCcCCCCCCCccCC-CCCCccccCCHHHHHHHHHHHHHCCCCEEEEEC------CCCcCccCHH
Confidence 5555432 3566 99999999999875321 112334568999999999998889999999987 5566667788
Q ss_pred HHHHHHHhc-C-ceE-EEeCCCCCHHHHHHHHHcCCCeEecCCCch-HHHHhccCCCCCHHHHHHHHHHHHHcCC-ceee
Q 022946 163 EYVKDIRDM-G-MEV-CCTLGMLEKHQAIELKKAGLTAYNHNLDTS-REFYSKIITTRSYDERLETLKHVREAGI-NVCS 237 (289)
Q Consensus 163 e~i~~ik~~-~-~~i-~~~~g~l~~e~l~~L~~aG~~~v~i~let~-~~~~~~i~~~~~~~~~~~~i~~~~~~Gi-~v~~ 237 (289)
++++.+++. + ..+ .+|||.+..+.++.|+++|++.|.+|+++. ++.++.+++..++++++++|+.+++.|+ .+..
T Consensus 84 ~li~~i~~~~~~~~i~itTNG~ll~~~~~~L~~agl~~i~ISlds~~~e~~~~i~~~~~~~~vl~~i~~~~~~g~~~v~i 163 (331)
T PRK00164 84 DIIAALAALPGIRDLALTTNGYLLARRAAALKDAGLDRVNVSLDSLDPERFKAITGRDRLDQVLAGIDAALAAGLTPVKV 163 (331)
T ss_pred HHHHHHHhcCCCceEEEEcCchhHHHHHHHHHHcCCCEEEEEeccCCHHHhccCCCCCCHHHHHHHHHHHHHCCCCcEEE
Confidence 888888754 2 333 467888777889999999999999999999 9999999988899999999999999998 7777
Q ss_pred cEEeecCCCHHHHHHHHHHHhcCCCCCCeeeeccceecCCC
Q 022946 238 GGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLAVKGT 278 (289)
Q Consensus 238 ~~i~Glget~ed~~~~l~~l~~l~~~~~~v~i~~~~p~pgT 278 (289)
.+++--|.+.+++.++++++.+++ . .+.+..|+|.++.
T Consensus 164 ~~vv~~g~n~~ei~~l~~~~~~~g--v-~v~~ie~~p~~~~ 201 (331)
T PRK00164 164 NAVLMKGVNDDEIPDLLEWAKDRG--I-QLRFIELMPTGEG 201 (331)
T ss_pred EEEEECCCCHHHHHHHHHHHHhCC--C-eEEEEEeeECCCC
Confidence 665533788899999999999883 3 5778888887755
No 82
>TIGR00538 hemN oxygen-independent coproporphyrinogen III oxidase. This model represents HemN, the oxygen-independent coproporphyrinogen III oxidase that replaces HemF function under anaerobic conditions. Several species, including E. coli, Helicobacter pylori, and Aquifex aeolicus, have both a member of this family and a member of another, closely related family for which there is no evidence of coproporphyrinogen III oxidase activity. Members of this family have a perfectly conserved motif PYRT[SC]YP in a region N-terminal to the region of homology with the related uncharacterized protein.
Probab=99.85 E-value=1.1e-19 Score=168.30 Aligned_cols=176 Identities=18% Similarity=0.216 Sum_probs=136.7
Q ss_pred cCCCCcCCCCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHH-----cCCcEEEEecccCCCCCCchhHHHHHHHHHHHHh
Q 022946 96 TGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKE-----AGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRD 170 (289)
Q Consensus 96 t~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~-----~g~~~i~i~~~~~~~~ge~~~~~~l~e~i~~ik~ 170 (289)
-+.|+.+|.||.+....... ........+.++++++.+.+ .++..|.|+||.... - ..+.+.++++.+++
T Consensus 56 iPFC~~~C~yC~~~~~~~~~-~~~~~~y~~~L~~Ei~~~~~~~~~~~~v~~I~fgGGtP~~-l---~~~~l~~ll~~i~~ 130 (455)
T TIGR00538 56 IPFCHKACYFCGCNVIITRQ-KHKADPYLDALEKEIALVAPLFDGNRHVSQLHWGGGTPTY-L---SPEQISRLMKLIRE 130 (455)
T ss_pred eCCccCcCCCCCCCccCCCC-cchHHHHHHHHHHHHHHHHHhcCCCCceEEEEECCCCcCC-C---CHHHHHHHHHHHHH
Confidence 57899999999987543211 11111246777777776532 367778887743221 1 34556666665553
Q ss_pred -----cC--ceEEEeCCCCCHHHHHHHHHcCCCeEecCCCch-HHHHhccCCCCCHHHHHHHHHHHHHcCCc-eeecEEe
Q 022946 171 -----MG--MEVCCTLGMLEKHQAIELKKAGLTAYNHNLDTS-REFYSKIITTRSYDERLETLKHVREAGIN-VCSGGII 241 (289)
Q Consensus 171 -----~~--~~i~~~~g~l~~e~l~~L~~aG~~~v~i~let~-~~~~~~i~~~~~~~~~~~~i~~~~~~Gi~-v~~~~i~ 241 (289)
.+ +.+.+++..++++.++.|+++|+++|++|+||+ +++++.+++.++.++++++++.++++|+. ++.++|+
T Consensus 131 ~~~~~~~~eitie~np~~l~~e~l~~lk~~G~~risiGvqS~~~~~l~~l~r~~~~~~~~~ai~~l~~~G~~~v~~dli~ 210 (455)
T TIGR00538 131 NFPFNADAEISIEIDPRYITKDVIDALRDEGFNRLSFGVQDFNKEVQQAVNRIQPEEMIFELMNHAREAGFTSINIDLIY 210 (455)
T ss_pred hCCCCCCCeEEEEeccCcCCHHHHHHHHHcCCCEEEEcCCCCCHHHHHHhCCCCCHHHHHHHHHHHHhcCCCcEEEeEEe
Confidence 12 334556677999999999999999999999999 99999999999999999999999999996 8999999
Q ss_pred ec-CCCHHHHHHHHHHHhcCCCCCCeeeeccceecCCC
Q 022946 242 GL-GEAEEDRVGLLHTLATLPTHPESVPINALLAVKGT 278 (289)
Q Consensus 242 Gl-get~ed~~~~l~~l~~l~~~~~~v~i~~~~p~pgT 278 (289)
|+ |+|.+++.++++++.++ +++.+.++.+.+.|++
T Consensus 211 GlPgqt~e~~~~tl~~~~~l--~~~~is~y~L~~~p~~ 246 (455)
T TIGR00538 211 GLPKQTKESFAKTLEKVAEL--NPDRLAVFNYAHVPWV 246 (455)
T ss_pred eCCCCCHHHHHHHHHHHHhc--CCCEEEEecCccccch
Confidence 99 99999999999999999 6899999999777753
No 83
>PRK13347 coproporphyrinogen III oxidase; Provisional
Probab=99.83 E-value=2.6e-19 Score=165.44 Aligned_cols=175 Identities=14% Similarity=0.159 Sum_probs=132.1
Q ss_pred cCCCCcCCCCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHH-----cCCcEEEEecccCCCCCCchhHHHHHHHHHHHHh
Q 022946 96 TGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKE-----AGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRD 170 (289)
Q Consensus 96 t~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~-----~g~~~i~i~~~~~~~~ge~~~~~~l~e~i~~ik~ 170 (289)
.+.|+.+|.||.+.+..... ......-.+.++++++.... .++..|.|+||..+. ...+++.++++.+++
T Consensus 57 IPfC~~~C~yC~~~~~~~~~-~~~~~~y~~~L~~Ei~~~~~~~~~~~~v~~i~fgGGTPs~----l~~~~l~~ll~~i~~ 131 (453)
T PRK13347 57 VPFCRSLCWFCGCNTIITQR-DAPVEAYVAALIREIRLVAASLPQRRRVSQLHWGGGTPTI----LNPDQFERLMAALRD 131 (453)
T ss_pred eCCccccCCCCCCcCcCccc-cchHHHHHHHHHHHHHHHHHhcCCCCeEEEEEEcCccccc----CCHHHHHHHHHHHHH
Confidence 47899999999987532111 01000124566666654432 245667777643221 123556666655553
Q ss_pred -----cCce--EEEeCCCCCHHHHHHHHHcCCCeEecCCCch-HHHHhccCCCCCHHHHHHHHHHHHHcCCc-eeecEEe
Q 022946 171 -----MGME--VCCTLGMLEKHQAIELKKAGLTAYNHNLDTS-REFYSKIITTRSYDERLETLKHVREAGIN-VCSGGII 241 (289)
Q Consensus 171 -----~~~~--i~~~~g~l~~e~l~~L~~aG~~~v~i~let~-~~~~~~i~~~~~~~~~~~~i~~~~~~Gi~-v~~~~i~ 241 (289)
.+.+ +.+++..++++.++.|+++|+++|++|+||+ +++++.+++.++++++.++++.++++|+. ++.++|+
T Consensus 132 ~~~~~~~~e~tie~~p~~lt~e~l~~L~~~G~~rvsiGvQS~~~~vl~~l~R~~~~~~~~~ai~~lr~~G~~~v~~dli~ 211 (453)
T PRK13347 132 AFDFAPEAEIAVEIDPRTVTAEMLQALAALGFNRASFGVQDFDPQVQKAINRIQPEEMVARAVELLRAAGFESINFDLIY 211 (453)
T ss_pred hCCCCCCceEEEEeccccCCHHHHHHHHHcCCCEEEECCCCCCHHHHHHhCCCCCHHHHHHHHHHHHhcCCCcEEEeEEE
Confidence 1233 4566778999999999999999999999999 99999999999999999999999999996 8999999
Q ss_pred ec-CCCHHHHHHHHHHHhcCCCCCCeeeeccceecCC
Q 022946 242 GL-GEAEEDRVGLLHTLATLPTHPESVPINALLAVKG 277 (289)
Q Consensus 242 Gl-get~ed~~~~l~~l~~l~~~~~~v~i~~~~p~pg 277 (289)
|+ |+|.+++.++++++.++ +++.+.++.|...|+
T Consensus 212 GlPgqt~e~~~~tl~~~~~l--~p~~i~~y~l~~~p~ 246 (453)
T PRK13347 212 GLPHQTVESFRETLDKVIAL--SPDRIAVFGYAHVPS 246 (453)
T ss_pred eCCCCCHHHHHHHHHHHHhc--CCCEEEEeccccccc
Confidence 99 99999999999999999 699999998875444
No 84
>PRK09249 coproporphyrinogen III oxidase; Provisional
Probab=99.83 E-value=3.1e-19 Score=165.02 Aligned_cols=176 Identities=15% Similarity=0.169 Sum_probs=134.7
Q ss_pred cCCCCcCCCCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHH-----cCCcEEEEecccCCCCCCchhHHHHHHHHHHHHh
Q 022946 96 TGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKE-----AGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRD 170 (289)
Q Consensus 96 t~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~-----~g~~~i~i~~~~~~~~ge~~~~~~l~e~i~~ik~ 170 (289)
-+.|+.+|.||.+....... ........+.++++++...+ .+++.+.|+||.. +.- ..+++.++++.+++
T Consensus 56 IPFC~~~C~yC~~~~~~~~~-~~~~~~y~~~L~~Ei~~~~~~~~~~~~v~~i~~gGGtP-s~l---~~~~l~~ll~~l~~ 130 (453)
T PRK09249 56 IPFCRSLCYYCGCNKIITRD-HEKADPYLDALEKEIALVAALLGPGRPVSQLHWGGGTP-TFL---SPEQLRRLMALLRE 130 (453)
T ss_pred eCCccccCCCCCCcccCCCC-cchHHHHHHHHHHHHHHHHHHhCCCCceEEEEECCccc-ccC---CHHHHHHHHHHHHH
Confidence 57899999999987532211 11111234666777665443 2466777766432 211 24566666666553
Q ss_pred c-----Cce--EEEeCCCCCHHHHHHHHHcCCCeEecCCCch-HHHHhccCCCCCHHHHHHHHHHHHHcCC-ceeecEEe
Q 022946 171 M-----GME--VCCTLGMLEKHQAIELKKAGLTAYNHNLDTS-REFYSKIITTRSYDERLETLKHVREAGI-NVCSGGII 241 (289)
Q Consensus 171 ~-----~~~--i~~~~g~l~~e~l~~L~~aG~~~v~i~let~-~~~~~~i~~~~~~~~~~~~i~~~~~~Gi-~v~~~~i~ 241 (289)
. +.+ +.+++..++++.++.|+++|+++|++|+||. +++++.+++.+++++++++++.++++|+ .++.++|+
T Consensus 131 ~~~~~~~~e~tie~np~~lt~e~l~~l~~aG~~risiGvqS~~~~~L~~l~r~~~~~~~~~ai~~l~~~G~~~v~~dli~ 210 (453)
T PRK09249 131 HFNFAPDAEISIEIDPRELDLEMLDALRELGFNRLSLGVQDFDPEVQKAVNRIQPFEFTFALVEAARELGFTSINIDLIY 210 (453)
T ss_pred hCCCCCCCEEEEEecCCcCCHHHHHHHHHcCCCEEEECCCCCCHHHHHHhCCCCCHHHHHHHHHHHHHcCCCcEEEEEEc
Confidence 2 233 4566777999999999999999999999999 9999999999999999999999999999 69999999
Q ss_pred ec-CCCHHHHHHHHHHHhcCCCCCCeeeeccceecCCC
Q 022946 242 GL-GEAEEDRVGLLHTLATLPTHPESVPINALLAVKGT 278 (289)
Q Consensus 242 Gl-get~ed~~~~l~~l~~l~~~~~~v~i~~~~p~pgT 278 (289)
|+ |+|.+++.++++++.++ +++.+.++.+.+.|++
T Consensus 211 GlPgqt~e~~~~~l~~~~~l--~~~~i~~y~l~~~p~~ 246 (453)
T PRK09249 211 GLPKQTPESFARTLEKVLEL--RPDRLAVFNYAHVPWL 246 (453)
T ss_pred cCCCCCHHHHHHHHHHHHhc--CCCEEEEccCccchhh
Confidence 99 99999999999999999 6999999999866654
No 85
>PF04055 Radical_SAM: Radical SAM superfamily; InterPro: IPR007197 Radical SAM proteins catalyze diverse reactions, including unusual methylations, isomerization, sulphur insertion, ring formation, anaerobic oxidation and protein radical formation. Evidence exists that these proteins generate a radical species by reductive cleavage of S:-adenosylmethionine (SAM) through an unusual Fe-S centre [, ].; GO: 0003824 catalytic activity, 0051536 iron-sulfur cluster binding; PDB: 2A5H_D 3T7V_A 3C8F_A 3CB8_A 2FB2_A 2FB3_A 3CIX_A 3IIX_A 3IIZ_A 3CIW_A ....
Probab=99.83 E-value=1.7e-19 Score=143.92 Aligned_cols=156 Identities=25% Similarity=0.435 Sum_probs=119.0
Q ss_pred ccccCCCCcCCCCCCCCCCCCCCCCCcCCCCHHHHHHHHHHH-HHcCCcEEEEecccCCCCCCchhHHHHHHHHHHHHh-
Q 022946 93 SIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKA-KEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRD- 170 (289)
Q Consensus 93 ~~~t~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~-~~~g~~~i~i~~~~~~~~ge~~~~~~l~e~i~~ik~- 170 (289)
++ |++||++|.||...... .......++++++++.++.+ ...|...+.++| |+|.....+.+.+..+.+
T Consensus 2 ~~-~~~C~~~C~fC~~~~~~--~~~~~~~~~~e~i~~~~~~~~~~~~~~~i~~~~------gep~~~~~~~~~~~~~~~~ 72 (166)
T PF04055_consen 2 ET-TRGCNLNCSFCYYPRSR--RKNKPREMSPEEILEEIKELKQDKGVKEIFFGG------GEPTLHPDFIELLELLRKI 72 (166)
T ss_dssp EE-ESEESS--TTTSTTTTC--CTCGCEECHHHHHHHHHHHHHHHTTHEEEEEES------STGGGSCHHHHHHHHHHHC
T ss_pred EE-CcCcCccCCCCCCCccC--CCcccccCCHHHHHHHHHHHhHhcCCcEEEEee------cCCCcchhHHHHHHHHHHh
Confidence 44 89999999999987531 11233448999999999999 588866666654 445555556666655553
Q ss_pred --cCceE-EEeCCC-CCHHHHHHHHHcCCCeEecCCCch-HH-HHhccCCCCCHHHHHHHHHHHHHcCCceeecEEeec-
Q 022946 171 --MGMEV-CCTLGM-LEKHQAIELKKAGLTAYNHNLDTS-RE-FYSKIITTRSYDERLETLKHVREAGINVCSGGIIGL- 243 (289)
Q Consensus 171 --~~~~i-~~~~g~-l~~e~l~~L~~aG~~~v~i~let~-~~-~~~~i~~~~~~~~~~~~i~~~~~~Gi~v~~~~i~Gl- 243 (289)
.++.+ ..++|. .+.+.++.|+++|++.+.+++++. ++ +.+.++++.++++++++++.++++|+.....+++|+
T Consensus 73 ~~~~~~i~~~t~~~~~~~~~l~~l~~~~~~~i~~~l~s~~~~~~~~~~~~~~~~~~~~~~l~~l~~~g~~~~~~~i~~~~ 152 (166)
T PF04055_consen 73 KKRGIRISINTNGTLLDEELLDELKKLGVDRIRISLESLDEESVLRIINRGKSFERVLEALERLKEAGIPRVIIFIVGLP 152 (166)
T ss_dssp TCTTEEEEEEEESTTHCHHHHHHHHHTTCSEEEEEEBSSSHHHHHHHHSSTSHHHHHHHHHHHHHHTTSETEEEEEEEBT
T ss_pred hccccceeeeccccchhHHHHHHHHhcCccEEecccccCCHHHhhhhhcCCCCHHHHHHHHHHHHHcCCCcEEEEEEEeC
Confidence 35554 234554 459999999999999999999999 88 888888888999999999999999998666677777
Q ss_pred CCCHHHHHHHHHHH
Q 022946 244 GEAEEDRVGLLHTL 257 (289)
Q Consensus 244 get~ed~~~~l~~l 257 (289)
|+|.+|+.++++++
T Consensus 153 ~~~~~e~~~~~~~i 166 (166)
T PF04055_consen 153 GENDEEIEETIRFI 166 (166)
T ss_dssp TTSHHHHHHHHHHH
T ss_pred CCCHHHHHHHhCcC
Confidence 99999999999875
No 86
>PRK05301 pyrroloquinoline quinone biosynthesis protein PqqE; Provisional
Probab=99.82 E-value=9.2e-19 Score=158.72 Aligned_cols=173 Identities=17% Similarity=0.311 Sum_probs=141.7
Q ss_pred eEeeccccCCCCcCCCCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHHcCCcEEEEecccCCCCCCchhHHHHHHHHHHH
Q 022946 89 CTLLSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDI 168 (289)
Q Consensus 89 ~~~i~~~t~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~~g~~~i~i~~~~~~~~ge~~~~~~l~e~i~~i 168 (289)
...+++ |+.||++|.||+...... .....++.+++.+.++.+.+.|+..|.|+| |||+..+++.++++.+
T Consensus 17 ~l~i~i-T~~CNl~C~~C~~~~~~~---~~~~~~~~e~~~~ii~~~~~~g~~~v~~~G------GEPll~~~~~~il~~~ 86 (378)
T PRK05301 17 WLLAEL-TYRCPLQCPYCSNPLDLA---RHGAELSTEEWIRVLREARALGALQLHFSG------GEPLLRKDLEELVAHA 86 (378)
T ss_pred EEEEEe-cCccCcCCCCCCCccccc---cccCCCCHHHHHHHHHHHHHcCCcEEEEEC------CccCCchhHHHHHHHH
Confidence 344666 999999999998753211 123448999999999999899998898876 5677778889999999
Q ss_pred HhcCceE-EEeCCC-CCHHHHHHHHHcCCCeEecCCCch-HHHHhccCCC-CCHHHHHHHHHHHHHcCCceeecEEeecC
Q 022946 169 RDMGMEV-CCTLGM-LEKHQAIELKKAGLTAYNHNLDTS-REFYSKIITT-RSYDERLETLKHVREAGINVCSGGIIGLG 244 (289)
Q Consensus 169 k~~~~~i-~~~~g~-l~~e~l~~L~~aG~~~v~i~let~-~~~~~~i~~~-~~~~~~~~~i~~~~~~Gi~v~~~~i~Glg 244 (289)
++.++.+ .+|||. ++++.++.|+++|++.|.+|+|+. +++++.+++. ++|+.++++++.+++.|+.+...+++ ..
T Consensus 87 ~~~g~~~~i~TNG~ll~~~~~~~L~~~g~~~v~iSldg~~~e~~d~irg~~g~f~~~~~~i~~l~~~g~~v~i~~vv-~~ 165 (378)
T PRK05301 87 RELGLYTNLITSGVGLTEARLAALKDAGLDHIQLSFQDSDPELNDRLAGTKGAFAKKLAVARLVKAHGYPLTLNAVI-HR 165 (378)
T ss_pred HHcCCcEEEECCCccCCHHHHHHHHHcCCCEEEEEecCCCHHHHHHHcCCCchHHHHHHHHHHHHHCCCceEEEEEe-ec
Confidence 8777653 456776 788999999999999999999999 9999998876 48999999999999999987766554 37
Q ss_pred CCHHHHHHHHHHHhcCCCCCCeeeecccee
Q 022946 245 EAEEDRVGLLHTLATLPTHPESVPINALLA 274 (289)
Q Consensus 245 et~ed~~~~l~~l~~l~~~~~~v~i~~~~p 274 (289)
.+.+++.++++++.++ +++.+.+..+.+
T Consensus 166 ~N~~~i~~~~~~~~~l--gv~~i~~~~~~~ 193 (378)
T PRK05301 166 HNIDQIPRIIELAVEL--GADRLELANTQY 193 (378)
T ss_pred CCHHHHHHHHHHHHHc--CCCEEEEecccc
Confidence 8899999999999999 578887766544
No 87
>COG0635 HemN Coproporphyrinogen III oxidase and related Fe-S oxidoreductases [Coenzyme metabolism]
Probab=99.82 E-value=6.6e-19 Score=160.01 Aligned_cols=186 Identities=18% Similarity=0.290 Sum_probs=144.7
Q ss_pred cCCCCcCCCCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHHc-----CCcEEEEecccCCCCCCchhHHHHHHHHHHHHh
Q 022946 96 TGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEA-----GSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRD 170 (289)
Q Consensus 96 t~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~~-----g~~~i~i~~~~~~~~ge~~~~~~l~e~i~~ik~ 170 (289)
.+.|...|.||.+++.......... .-.+.+.++++..... .++.|+|+||.. +.-.+..++.+++.++..-.
T Consensus 41 iPFC~~~C~YC~fn~~~~~~~~~~~-~Y~~aL~~Ei~~~~~~~~~~~~v~ti~~GGGTP-slL~~~~l~~ll~~l~~~~~ 118 (416)
T COG0635 41 IPFCVSKCPYCDFNSHVTKRGQPVD-EYLDALLEEIELVAALLGGQREVKTIYFGGGTP-SLLSPEQLERLLKALRELFN 118 (416)
T ss_pred cccccccCCCCCCeeeccCCCChHH-HHHHHHHHHHHHHHhhcCCCCeEEEEEECCCcc-ccCCHHHHHHHHHHHHHhcc
Confidence 5899999999999864332110000 0123444455444332 256677776543 33345666777777765432
Q ss_pred -cC--ce--EEEeCCCCCHHHHHHHHHcCCCeEecCCCch-HHHHhccCCCCCHHHHHHHHHHHHHcCCc-eeecEEeec
Q 022946 171 -MG--ME--VCCTLGMLEKHQAIELKKAGLTAYNHNLDTS-REFYSKIITTRSYDERLETLKHVREAGIN-VCSGGIIGL 243 (289)
Q Consensus 171 -~~--~~--i~~~~g~l~~e~l~~L~~aG~~~v~i~let~-~~~~~~i~~~~~~~~~~~~i~~~~~~Gi~-v~~~~i~Gl 243 (289)
.. .+ +.++++.++.+.++.|+++|+++|++|+|++ +++++.+.+.++.++..++++.+++.|+. ++.++|+|+
T Consensus 119 ~~~~~~EitiE~nP~~~~~e~~~~l~~~GvNRiSlGVQsf~~~~lk~lgR~h~~~~~~~a~~~~~~~g~~~in~DLIygl 198 (416)
T COG0635 119 DLDPDAEITIEANPGTVEAEKFKALKEAGVNRISLGVQSFNDEVLKALGRIHDEEEAKEAVELARKAGFTSINIDLIYGL 198 (416)
T ss_pred cCCCCceEEEEeCCCCCCHHHHHHHHHcCCCEEEeccccCCHHHHHHhcCCCCHHHHHHHHHHHHHcCCCcEEEEeecCC
Confidence 21 33 5667899999999999999999999999999 99999999999999999999999999996 999999999
Q ss_pred -CCCHHHHHHHHHHHhcCCCCCCeeeeccceecCCCCCCCCCC
Q 022946 244 -GEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQKL 285 (289)
Q Consensus 244 -get~ed~~~~l~~l~~l~~~~~~v~i~~~~p~pgTpl~~~~~ 285 (289)
++|.+++.++++.+.++ +|+.++++.|.-.|+|++.....
T Consensus 199 P~QT~~~~~~~l~~a~~l--~pdhis~y~L~~~p~t~~~~~~~ 239 (416)
T COG0635 199 PGQTLESLKEDLEQALEL--GPDHLSLYSLAIEPGTKFAQRKI 239 (416)
T ss_pred CCCCHHHHHHHHHHHHhC--CCCEEEEeeeecCCCchhhhhcc
Confidence 99999999999999999 69999999999999999987544
No 88
>COG0320 LipA Lipoate synthase [Coenzyme metabolism]
Probab=99.82 E-value=8.9e-19 Score=144.92 Aligned_cols=170 Identities=22% Similarity=0.383 Sum_probs=140.8
Q ss_pred ccCCCCcCCCCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHHcCCcEEEEecccCCCCCCchhHHHHHHHHHHHHhc---
Q 022946 95 KTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDM--- 171 (289)
Q Consensus 95 ~t~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~~g~~~i~i~~~~~~~~ge~~~~~~l~e~i~~ik~~--- 171 (289)
++..|..+|.||..... . + ..++++|-.+.++..+..|.+.++|++.+++... +.....+.+.|+++++.
T Consensus 76 mG~~CTR~C~FC~V~~g----~-P-~~lD~~EP~rvAeaV~~mgLkyVViTsVdRDDL~-DGGA~hfa~~i~~Ire~~P~ 148 (306)
T COG0320 76 LGDICTRRCRFCDVKTG----R-P-NPLDPDEPERVAEAVKDMGLKYVVITSVDRDDLP-DGGAQHFAECIRAIRELNPQ 148 (306)
T ss_pred ccchhccCCCccccCCC----C-C-CCCCCchHHHHHHHHHHhCCCeEEEEeecccccc-ccchHHHHHHHHHHHhhCCC
Confidence 48899999999998742 1 2 2378888888888888999999999988776551 22335566666666643
Q ss_pred -CceEEEeCCCCCHHHHHHHHHcCCCeEecCCCchHHHHhccCCCCCHHHHHHHHHHHHHcC--CceeecEEeecCCCHH
Q 022946 172 -GMEVCCTLGMLEKHQAIELKKAGLTAYNHNLDTSREFYSKIITTRSYDERLETLKHVREAG--INVCSGGIIGLGEAEE 248 (289)
Q Consensus 172 -~~~i~~~~g~l~~e~l~~L~~aG~~~v~i~let~~~~~~~i~~~~~~~~~~~~i~~~~~~G--i~v~~~~i~Glget~e 248 (289)
.+++.+....=..+.++.+.++|.|.+++++||.++++..++++.+|+.-++.++.+++.+ +.+.+++|+|+|||.+
T Consensus 149 t~iEvL~PDF~G~~~al~~v~~~~pdV~nHNvETVprL~~~VRp~A~Y~~SL~~L~~~k~~~P~i~TKSgiMlGLGEt~~ 228 (306)
T COG0320 149 TTIEVLTPDFRGNDDALEIVADAGPDVFNHNVETVPRLYPRVRPGATYERSLSLLERAKELGPDIPTKSGLMVGLGETDE 228 (306)
T ss_pred ceEEEeCccccCCHHHHHHHHhcCcchhhcccccchhcccccCCCCcHHHHHHHHHHHHHhCCCcccccceeeecCCcHH
Confidence 4566655333368889999999999999999999999999999999999999999999998 6789999999999999
Q ss_pred HHHHHHHHHhcCCCCCCeeeeccce
Q 022946 249 DRVGLLHTLATLPTHPESVPINALL 273 (289)
Q Consensus 249 d~~~~l~~l~~l~~~~~~v~i~~~~ 273 (289)
++.++++.|++. +++.+.+..|+
T Consensus 229 Ev~e~m~DLr~~--gvdilTiGQYl 251 (306)
T COG0320 229 EVIEVMDDLRSA--GVDILTIGQYL 251 (306)
T ss_pred HHHHHHHHHHHc--CCCEEEecccc
Confidence 999999999999 68999998775
No 89
>TIGR02109 PQQ_syn_pqqE coenzyme PQQ biosynthesis protein E. This model describes coenzyme PQQ biosynthesis protein E, a gene required for the biosynthesis of pyrrolo-quinoline-quinone (coenzyme PQQ). PQQ is required for some glucose dehydrogenases and alcohol dehydrogenases.
Probab=99.81 E-value=2.2e-18 Score=155.16 Aligned_cols=172 Identities=17% Similarity=0.303 Sum_probs=139.4
Q ss_pred EeeccccCCCCcCCCCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHHcCCcEEEEecccCCCCCCchhHHHHHHHHHHHH
Q 022946 90 TLLSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIR 169 (289)
Q Consensus 90 ~~i~~~t~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~~g~~~i~i~~~~~~~~ge~~~~~~l~e~i~~ik 169 (289)
..+++ |+.||++|.||+...... .....++.+++.+.++++.+.|+..|.|+| |||...+++.++++.++
T Consensus 9 l~iei-T~~CNl~C~~C~~~~~~~---~~~~~l~~e~~~~ii~~~~~~g~~~v~~~G------GEPll~~~~~~ii~~~~ 78 (358)
T TIGR02109 9 LLAEL-THRCPLQCPYCSNPLELA---RRKAELTTEEWTDVLTQAAELGVLQLHFSG------GEPLARPDLVELVAHAR 78 (358)
T ss_pred EEEee-ccccCcCCCCCCCChhcc---cccCCCCHHHHHHHHHHHHhcCCcEEEEeC------ccccccccHHHHHHHHH
Confidence 34666 999999999998753211 123448999999999999899998998876 56766778889999888
Q ss_pred hcCceE-EEeCCC-CCHHHHHHHHHcCCCeEecCCCch-HHHHhccCCC-CCHHHHHHHHHHHHHcCCceeecEEeecCC
Q 022946 170 DMGMEV-CCTLGM-LEKHQAIELKKAGLTAYNHNLDTS-REFYSKIITT-RSYDERLETLKHVREAGINVCSGGIIGLGE 245 (289)
Q Consensus 170 ~~~~~i-~~~~g~-l~~e~l~~L~~aG~~~v~i~let~-~~~~~~i~~~-~~~~~~~~~i~~~~~~Gi~v~~~~i~Glge 245 (289)
+.++.+ .+|||. ++++.++.|+++|++.|.+|+|+. +++++++++. .+++.++++++.+++.|+.+...+++ ..+
T Consensus 79 ~~g~~~~l~TNG~ll~~e~~~~L~~~g~~~v~iSldg~~~e~~d~~rg~~g~f~~v~~~i~~l~~~g~~v~v~~vv-~~~ 157 (358)
T TIGR02109 79 RLGLYTNLITSGVGLTEARLDALADAGLDHVQLSFQGVDEALADRIAGYKNAFEQKLAMARAVKAAGLPLTLNFVI-HRH 157 (358)
T ss_pred HcCCeEEEEeCCccCCHHHHHHHHhCCCCEEEEeCcCCCHHHHHHhcCCccHHHHHHHHHHHHHhCCCceEEEEEe-ccC
Confidence 777653 467786 789999999999999999999999 9999998764 57999999999999999987665544 278
Q ss_pred CHHHHHHHHHHHhcCCCCCCeeeecccee
Q 022946 246 AEEDRVGLLHTLATLPTHPESVPINALLA 274 (289)
Q Consensus 246 t~ed~~~~l~~l~~l~~~~~~v~i~~~~p 274 (289)
+.+++.++++++.++ +++.+.+....+
T Consensus 158 N~~~l~~~~~~~~~l--g~~~i~~~~~~~ 184 (358)
T TIGR02109 158 NIDQIPEIIELAIEL--GADRVELATTQY 184 (358)
T ss_pred CHHHHHHHHHHHHHc--CCCEEEEEeeec
Confidence 899999999999999 577777655433
No 90
>PRK00955 hypothetical protein; Provisional
Probab=99.81 E-value=1.5e-18 Score=162.00 Aligned_cols=228 Identities=13% Similarity=0.208 Sum_probs=153.2
Q ss_pred cCCCCCCCHHHHHHhhCCChHHHHHHHHHHHHhhhCCCeeEEeEeeccccCCCCcCCCCCCCCCCCCCCCCCcCCCCHHH
Q 022946 47 EGPRHDWSKDDIKSIYDSPVLDLLFHGAQVHRHAHNFREVQQCTLLSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDA 126 (289)
Q Consensus 47 ~~~~~~ls~ee~~~l~~~~~~~l~~~a~~~~r~~~~g~~~~~~~~i~~~t~~C~~~C~fC~~~~~~~~~~~~~~~~~~ee 126 (289)
..+...||.+|+..+|+.|....-...-.. ....+---.+...|.+ ++||+..|+||..+...+ ...+.+++++
T Consensus 253 npp~~~l~~~e~d~~y~lpy~r~~hp~y~~--~g~ipa~~~i~~sI~i-~RGC~g~CSFCaIp~~rG---r~~rSRs~es 326 (620)
T PRK00955 253 NPPAPPLTQEELDEVYDLPYTRTYHPSYEE--KGGIPAIEEVKFSITS-HRGCFGGCSFCAITFHQG---RFIQSRSQES 326 (620)
T ss_pred CCCCCCCChhhhhhccCCCcccCcchhhcc--CCCCCceeeEEEEEEe-eCCCCCCCCCCCeecccC---CcceecCHHH
Confidence 345557899999999987653322111110 0001111134455777 999999999998875432 2224469999
Q ss_pred HHHHHHHHHHc-CCcEEE--EecccCCCCCC-------------------------chhHHHHHHHHHHHHhc-Cce-EE
Q 022946 127 VMQAAQKAKEA-GSTRFC--MGAAWRDTIGR-------------------------KTNFNQILEYVKDIRDM-GME-VC 176 (289)
Q Consensus 127 i~~~~~~~~~~-g~~~i~--i~~~~~~~~ge-------------------------~~~~~~l~e~i~~ik~~-~~~-i~ 176 (289)
|+++++.+.+. |++.+. ++|...+.+|. ......+.++++++++. ++. +.
T Consensus 327 Iv~Evk~L~~~~gfkg~I~DlgGptan~Yg~~c~~~~~~~~c~~~~clfp~~c~nl~~d~~~l~~LLr~l~~l~gvkrv~ 406 (620)
T PRK00955 327 ILREAKELTEMPDFKGYIHDVGGPTANFRKMACKKQLKCGACKNKQCLFPKPCKNLDVDHKEYLELLRKVRKLPGVKKVF 406 (620)
T ss_pred HHHHHHHHHhccCCeEEEEeCCCCCccccccccccccccccccccccccCccccccCcChHHHHHHHHHHhccCCceEEE
Confidence 99999998876 777763 22222222221 01234678888887754 442 44
Q ss_pred EeCC----C----CCHHHHHHHHHcCCC-eEecCCCch-HHHHhccCCCCC--HHHHHHHH-HHHHHcCCc--eeecEEe
Q 022946 177 CTLG----M----LEKHQAIELKKAGLT-AYNHNLDTS-REFYSKIITTRS--YDERLETL-KHVREAGIN--VCSGGII 241 (289)
Q Consensus 177 ~~~g----~----l~~e~l~~L~~aG~~-~v~i~let~-~~~~~~i~~~~~--~~~~~~~i-~~~~~~Gi~--v~~~~i~ 241 (289)
++.| . .+++.+++|.+.++. .+.+++|+. +++++.++++.. +++.++.+ +.+++.|+. +.+++|+
T Consensus 407 isSGIR~D~l~~~~~~~~l~eL~~~~vsg~L~IapESgSd~VLk~M~K~~~~~~~~f~~~~~~i~~~~G~~~~I~~yfIv 486 (620)
T PRK00955 407 IRSGIRYDYLLHDKNDEFFEELCEHHVSGQLKVAPEHISDRVLKLMGKPSREVYDKFVKKFDRINKKLGKKQYLVPYLMS 486 (620)
T ss_pred eecceeccccccCCcHHHHHHHHHHhcCCCceeCcCCCChHHHHHhCCCCHHHHHHHHHHHHHhhhhcCCCccEEEEEEE
Confidence 4433 1 234578888876443 688999999 999999988632 34444333 445678876 8889999
Q ss_pred ec-CCCHHHHHHHHHHHhcCCCCCCeeeeccceecCCCCCCC
Q 022946 242 GL-GEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQD 282 (289)
Q Consensus 242 Gl-get~ed~~~~l~~l~~l~~~~~~v~i~~~~p~pgTpl~~ 282 (289)
|+ |||.+|+.+++++++++ +.+.++++.|+|.|||+...
T Consensus 487 GfPGETeEDf~et~eflkel--~~~~~qV~~fTP~PGT~At~ 526 (620)
T PRK00955 487 SHPGSTLEDAIELAEYTKDL--GYQPEQVQDFYPTPGTLSTT 526 (620)
T ss_pred ECCCCCHHHHHHHHHHHHHc--CCCcceeeeeecCCCcchhh
Confidence 99 99999999999999999 68899999999999988654
No 91
>TIGR01211 ELP3 histone acetyltransferase, ELP3 family. The Saccharomyces cerevisiae member YPL086C has been characterized in vitro as an N-terminal acetyltransferase for all four core histones. It is a component of the RNA polymerase II holoenzyme, designated Elp3p for Elongator Protein 3. Members of this family are found in eukaryotes and archaea. These proteins are part of the larger set of GNAT acetyltransferases.
Probab=99.81 E-value=6.9e-18 Score=156.37 Aligned_cols=193 Identities=15% Similarity=0.262 Sum_probs=145.4
Q ss_pred eEEeEeeccccCCCCc-CCCCCCCC-------CCCCCC------CCCcCCCCHHHHHHHHHHHHHcC--CcEE--EEecc
Q 022946 86 VQQCTLLSIKTGGCSE-DCSYCPQS-------SRYDTG------VKGQKLMTKDAVMQAAQKAKEAG--STRF--CMGAA 147 (289)
Q Consensus 86 ~~~~~~i~~~t~~C~~-~C~fC~~~-------~~~~~~------~~~~~~~~~eei~~~~~~~~~~g--~~~i--~i~~~ 147 (289)
|.+.+++.- -..||+ +|.||... +.|... ..++.+-+.+++...++.+...| ++.| .|.||
T Consensus 66 v~~v~vm~~-p~~cph~~c~~cp~~~~~~~~~~sy~~~ep~~~ra~~~~~dpy~q~~~rl~~l~~~g~~~~kvE~i~~GG 144 (522)
T TIGR01211 66 VAVVAVMTS-PHRCPHGKCLYCPGGPDSENSPQSYTGYEPAAMRGRQNDYDPYEQVTARLEQLEQIGHPVDKVELIIMGG 144 (522)
T ss_pred eEEEEEecC-CccCCCCceEeCCCCCCcCCCCcccCCCCcHhHHHHHcCCCcHHHHHHHHHHHHHhCCCCceEEEEEECC
Confidence 334344432 457996 79999642 222111 01234468899999999988866 4344 45554
Q ss_pred cCCCCCCchhHHHHHHHHHHHH-h-------------------------cCceEEEeCCCCCHHHHHHHHHcCCCeEecC
Q 022946 148 WRDTIGRKTNFNQILEYVKDIR-D-------------------------MGMEVCCTLGMLEKHQAIELKKAGLTAYNHN 201 (289)
Q Consensus 148 ~~~~~ge~~~~~~l~e~i~~ik-~-------------------------~~~~i~~~~g~l~~e~l~~L~~aG~~~v~i~ 201 (289)
. ++.-.....+++++.+.... . .++.+.+++..++++.++.|+++|+++|++|
T Consensus 145 T-ft~l~~~y~~~fl~~~~~a~~~~~~~~~~~~~~~~~~~~ne~a~~~~vgitiEtRPD~i~~e~L~~L~~~G~~rVslG 223 (522)
T TIGR01211 145 T-FPARDLDYQEWFIKRCLNAMNGFDQELKGNSTLEEAIRINETSKHRCVGLTIETRPDYCREEHIDRMLKLGATRVELG 223 (522)
T ss_pred C-cccCCHHHHHHHHHHHHHHhccccccccccchHHHHHHhhhcccCCeEEEEEEEcCCcCCHHHHHHHHHcCCCEEEEE
Confidence 3 33322344455555444321 1 1333456678899999999999999999999
Q ss_pred CCch-HHHHhccCCCCCHHHHHHHHHHHHHcCCceeecEEeec-CCCHHHHHHHHHHHhc---CCCCCCeeeeccceecC
Q 022946 202 LDTS-REFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGL-GEAEEDRVGLLHTLAT---LPTHPESVPINALLAVK 276 (289)
Q Consensus 202 let~-~~~~~~i~~~~~~~~~~~~i~~~~~~Gi~v~~~~i~Gl-get~ed~~~~l~~l~~---l~~~~~~v~i~~~~p~p 276 (289)
+||+ +++++.++++++.++++++++.++++|++++.++|+|+ |+|.++..++++.+.+ + +++.+.++++.+.|
T Consensus 224 VQS~~d~VL~~inRght~~~v~~Ai~~lr~~G~~v~~~LM~GLPgqt~e~~~~t~~~l~~~~~l--~pD~Ikiypl~V~~ 301 (522)
T TIGR01211 224 VQTIYNDILERTKRGHTVRDVVEATRLLRDAGLKVVYHIMPGLPGSSFERDLEMFREIFEDPRF--KPDMLKIYPTLVTR 301 (522)
T ss_pred CccCCHHHHHHhCCCCCHHHHHHHHHHHHHcCCeEEEEeecCCCCCCHHHHHHHHHHHHhccCC--CcCEEEEecceeeC
Confidence 9999 99999999999999999999999999999999999999 9999999999999874 7 69999999999999
Q ss_pred CCCCCC
Q 022946 277 GTPLQD 282 (289)
Q Consensus 277 gTpl~~ 282 (289)
||+|++
T Consensus 302 gT~L~~ 307 (522)
T TIGR01211 302 GTELYE 307 (522)
T ss_pred CCHHHH
Confidence 999975
No 92
>PRK01254 hypothetical protein; Provisional
Probab=99.81 E-value=1.6e-18 Score=160.88 Aligned_cols=226 Identities=16% Similarity=0.204 Sum_probs=161.2
Q ss_pred CCCCCCHHHHHHhhCCChHHHHHHHHHHHHhhhCCCeeEEeEeeccccCCCCcCCCCCCCCCCCCCCCCCcCCCCHHHHH
Q 022946 49 PRHDWSKDDIKSIYDSPVLDLLFHGAQVHRHAHNFREVQQCTLLSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVM 128 (289)
Q Consensus 49 ~~~~ls~ee~~~l~~~~~~~l~~~a~~~~r~~~~g~~~~~~~~i~~~t~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~ 128 (289)
+-..||.+|+..+|+.|....-...-.. .. .+---.+...|.+ ++||+.+|+||+.+...+ ......|.|+|+
T Consensus 336 P~~plt~~ElD~vy~LPy~R~~HP~Y~~--~~-ipA~e~i~~sV~i-~RGC~g~CSFCaI~~hqG---r~irSRS~esIL 408 (707)
T PRK01254 336 PAIPLSTEEMDSVFALPYARVPHPAYGK--AR-IPAYDMIRFSVNI-MRGCFGGCSFCSITEHEG---RIIQSRSEESII 408 (707)
T ss_pred CcCCCCHHHHHHHhCCCcccccCccccc--CC-CCchhheEEEEEE-ccCCCCCCCccccccccC---CeeeeCCHHHHH
Confidence 3346788888888776543211111000 00 1111123345676 999999999999885432 123446999999
Q ss_pred HHHHHHHHc--CCcEEE--EecccCCCCCC---c----------------------hhHHHHHHHHHHHHhc-Cce-EEE
Q 022946 129 QAAQKAKEA--GSTRFC--MGAAWRDTIGR---K----------------------TNFNQILEYVKDIRDM-GME-VCC 177 (289)
Q Consensus 129 ~~~~~~~~~--g~~~i~--i~~~~~~~~ge---~----------------------~~~~~l~e~i~~ik~~-~~~-i~~ 177 (289)
++++.+.+. |++.+. ++|.+.+.+|- + .....+.++++++++. |+. +.+
T Consensus 409 ~Ea~~L~~~~pGfKgii~DLgGptaN~YG~~c~d~~~~~~C~~~~Cl~P~~C~nL~~dh~~l~eLLrkLr~IpGVKkVrI 488 (707)
T PRK01254 409 NEIEAIRDKVPGFTGVISDLGGPTANMYRLRCKSPRAEQTCRRLSCVYPDICPHLDTDHEPTINLYRRARDLKGIKKILI 488 (707)
T ss_pred HHHHHHHHhCCCcEEEEeccCCCccccccccccccccccccccccccCcccccccCCCHHHHHHHHHHHHhCCCceEEEE
Confidence 999999864 999988 66655555552 0 1235788888888754 542 433
Q ss_pred eCC------CCCHHHHHHHHHcCCC-eEecCCCch-HHHHhccCCC--CCHHHHHHHHHHHHH-cCC--ceeecEEeec-
Q 022946 178 TLG------MLEKHQAIELKKAGLT-AYNHNLDTS-REFYSKIITT--RSYDERLETLKHVRE-AGI--NVCSGGIIGL- 243 (289)
Q Consensus 178 ~~g------~l~~e~l~~L~~aG~~-~v~i~let~-~~~~~~i~~~--~~~~~~~~~i~~~~~-~Gi--~v~~~~i~Gl- 243 (289)
..| ..+++.+++|.+..+. .+.+.+|+. +++++.++++ .++++..+.++.+++ .|. .+.+.||+|+
T Consensus 489 ~SgiR~Dl~l~d~elIeel~~~hV~g~LkVppEH~Sd~VLk~M~Kp~~~~~e~F~e~f~rirk~~gk~q~LipyfIvGhP 568 (707)
T PRK01254 489 ASGVRYDLAVEDPRYVKELVTHHVGGYLKIAPEHTEEGPLSKMMKPGMGSYDRFKELFDKYSKEAGKEQYLIPYFISAHP 568 (707)
T ss_pred EcCCCccccccCHHHHHHHHHhCCccccccccccCCHHHHHHhCCCCcccHHHHHHHHHHHHHHCCCCeEEEEeEEEECC
Confidence 322 1358889999887775 778999999 9999999986 578999999999866 565 3566899999
Q ss_pred CCCHHHHHHHHHHHhcCCCCCCeeeeccceecC---CCCCCCC
Q 022946 244 GEAEEDRVGLLHTLATLPTHPESVPINALLAVK---GTPLQDQ 283 (289)
Q Consensus 244 get~ed~~~~l~~l~~l~~~~~~v~i~~~~p~p---gTpl~~~ 283 (289)
|||.+|+.+++++++++ +...-++..|+|.| +|.|+.-
T Consensus 569 GeTeeDf~eLaefLkel--~f~~eQVQ~FTPtP~t~~T~MYyt 609 (707)
T PRK01254 569 GTTDEDMVNLALWLKKN--RFRLDQVQNFYPSPMANATTMYYT 609 (707)
T ss_pred CCCHHHHHHHHHHHHHh--CCCcceeeeeecCCCcCchHHHhc
Confidence 99999999999999999 56777788999999 8888763
No 93
>COG1032 Fe-S oxidoreductase [Energy production and conversion]
Probab=99.80 E-value=1.1e-18 Score=163.29 Aligned_cols=190 Identities=22% Similarity=0.333 Sum_probs=141.6
Q ss_pred eEeeccccCCCCcCCCCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHHcCCcEEEEecccCCCCCCc-hhHHHHHHHHH-
Q 022946 89 CTLLSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRK-TNFNQILEYVK- 166 (289)
Q Consensus 89 ~~~i~~~t~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~~g~~~i~i~~~~~~~~ge~-~~~~~l~e~i~- 166 (289)
...+++ ++||+++|.||..+..+ ..+.++.+.++++++...+.|...+.+..++...++.+ ...+...+.+.
T Consensus 199 ~~~ve~-~RGCp~~C~FC~~~~~~-----~~r~~~~~~v~~ei~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~l~~ 272 (490)
T COG1032 199 AFSVET-SRGCPRGCRFCSITKHF-----KYRRRRPERVVEEIKELIEEGGKRVVFFVDDIFLYGSPALNDEKRFELLSL 272 (490)
T ss_pred EEEEEe-ccCCCCCCCCCCCcccc-----cccCCCHHHHHHHHHHHHHHhhhcCcccccceeecCCccccchhhcccchH
Confidence 356777 99999999999987532 34457889999988888777766654322222223322 12223333222
Q ss_pred HHHhcCc------eEE---EeCCCCC-HHHHHHHHHcCCCeEecCCCch-HHHHhccCCCCCHHHHHH-HHHHHHHcCCc
Q 022946 167 DIRDMGM------EVC---CTLGMLE-KHQAIELKKAGLTAYNHNLDTS-REFYSKIITTRSYDERLE-TLKHVREAGIN 234 (289)
Q Consensus 167 ~ik~~~~------~i~---~~~g~l~-~e~l~~L~~aG~~~v~i~let~-~~~~~~i~~~~~~~~~~~-~i~~~~~~Gi~ 234 (289)
.+.+.+. .+. .....++ ++.+..++++|+.++.+|+||. +++++.++++.+.++.++ +++.+++.|+.
T Consensus 273 ~~~~~~~~~~~~~~~~~~~~r~d~~~~~~~~~~~~~~g~~~~~iG~Esgs~~~l~~~~k~~~~~~~~~~a~~~~~~~~~~ 352 (490)
T COG1032 273 ELIERGLRKGCRVHISAPSLRADTVTDEELLKLLREAGLRRVYIGIESGSEELLKKINKGITTEEVLEEAVKIAKEHGLR 352 (490)
T ss_pred HHHHHhcccCceeeeeccccCchhcCHHHHHHHHhhCCCcceEEeccCCCHHHHHHHhCCCChHHHHHHHHHHHHhCCce
Confidence 2222211 222 2234566 8888999999999999999999 999999999999999995 99999999999
Q ss_pred eeecEEeec-CCCHHHHHHH---HHHHhcCCCCC-CeeeeccceecCCCCCCCCCCC
Q 022946 235 VCSGGIIGL-GEAEEDRVGL---LHTLATLPTHP-ESVPINALLAVKGTPLQDQKLK 286 (289)
Q Consensus 235 v~~~~i~Gl-get~ed~~~~---l~~l~~l~~~~-~~v~i~~~~p~pgTpl~~~~~~ 286 (289)
+..++|+|+ |||.+|+..+ ++++.++ +. ..+.++.|+|+|||+++..+..
T Consensus 353 ~~~~~i~G~pget~ed~~~t~~~~~~~~~~--~~~~~~~~~~~~p~p~t~~~~~~~~ 407 (490)
T COG1032 353 VKLYFIVGLPGETEEDVKETIELAKFIKKL--GPKLYVSPSPFVPLPGTPLQEMPKL 407 (490)
T ss_pred eeEEEEEcCCCCCHHHHHHHHHHHHHHHHh--CccceEEEeeeeCCCCCchhhcccc
Confidence 999999999 9999999998 6777778 45 4799999999999999987653
No 94
>TIGR03470 HpnH hopanoid biosynthesis associated radical SAM protein HpnH. The sequences represented by this model are members of the radical SAM superfamily of enzymes (pfam04055). These enzymes utilize an iron-sulfur redox cluster and S-adenosylmethionine to carry out diverse radical mediated reactions. The members of this clade are frequently found in the same locus as squalene-hopene cyclase (SHC, TIGR01507) and other genes associated with the biosynthesis of hopanoid natural products. The linkage between SHC and this radical SAM enzyme is strong; one is nearly always observed in the same genome where the other is found. A hopanoid biosynthesis locus was described in Zymomonas mobilis consisting of the genes HpnA-E and SHC (HpnF). Continuing past SHC are found a phosphorylase enzyme (ZMO0873, i.e. HpnG, TIGR03468) and this radical SAM enzyme (ZMO0874) which we name here HpnH. Granted, in Z. mobilis, HpnH is in a convergent orientation with respect to HpnA-G, but one gene beyond HpnH
Probab=99.80 E-value=9e-18 Score=148.27 Aligned_cols=201 Identities=17% Similarity=0.241 Sum_probs=149.8
Q ss_pred ChHHHHHHHHHHHHhhhCCCee-EEeEeeccccCCCCcCCCCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHHcCCcEEE
Q 022946 65 PVLDLLFHGAQVHRHAHNFREV-QQCTLLSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAGSTRFC 143 (289)
Q Consensus 65 ~~~~l~~~a~~~~r~~~~g~~~-~~~~~i~~~t~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~~g~~~i~ 143 (289)
|+...+..++.+.+++..+.+- .+...+++ |..||++|.||+...... . .....++.|++++.++ +.|+..|.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~Pl~l~le~-T~~CNL~C~~C~~~~~~~-~-~~~~~ls~ee~~~~i~---e~g~~~V~ 77 (318)
T TIGR03470 4 PLRQNLRVGAYIIKQKLNGRKRFPLVLMLEP-LFRCNLACAGCGKIQYPA-E-ILKQRLSVEECLRAVD---ECGAPVVS 77 (318)
T ss_pred cHHHHHHHHHHHHHHHHhcCCCCCCEEEEec-ccccCcCCcCCCCCcCCC-c-ccccCCCHHHHHHHHH---HcCCCEEE
Confidence 4444455556666665555433 24455777 999999999998753221 1 1223489999887665 46888888
Q ss_pred EecccCCCCCCchhHHHHHHHHHHHHhcCceE-EEeCCCCCHHHHHHHHHcCCCeEecCCCchHHHHhccC-CCCCHHHH
Q 022946 144 MGAAWRDTIGRKTNFNQILEYVKDIRDMGMEV-CCTLGMLEKHQAIELKKAGLTAYNHNLDTSREFYSKII-TTRSYDER 221 (289)
Q Consensus 144 i~~~~~~~~ge~~~~~~l~e~i~~ik~~~~~i-~~~~g~l~~e~l~~L~~aG~~~v~i~let~~~~~~~i~-~~~~~~~~ 221 (289)
|.| |||+..+++.++++.+++.+..+ .+|||.+..+.+..++++|...|.+++|+.++.++.+. +..+|+.+
T Consensus 78 i~G------GEPLL~pdl~eiv~~~~~~g~~v~l~TNG~ll~~~~~~l~~~~~~~i~VSLDG~~e~hd~~~~~~g~f~~~ 151 (318)
T TIGR03470 78 IPG------GEPLLHPEIDEIVRGLVARKKFVYLCTNALLLEKKLDKFEPSPYLTFSVHLDGLREHHDASVCREGVFDRA 151 (318)
T ss_pred EeC------ccccccccHHHHHHHHHHcCCeEEEecCceehHHHHHHHHhCCCcEEEEEEecCchhhchhhcCCCcHHHH
Confidence 876 67877788999999888766553 56789877778899999999999999999866777664 45789999
Q ss_pred HHHHHHHHHcCCceeecEEeecCCCHHHHHHHHHHHhcCCCCCCeeeeccceecCCCC
Q 022946 222 LETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTP 279 (289)
Q Consensus 222 ~~~i~~~~~~Gi~v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~i~~~~p~pgTp 279 (289)
+++|+.+++.|+.+...+.+--+++.+++.+.++++.++ +++.+.+.+..|+..++
T Consensus 152 l~~I~~l~~~G~~v~v~~tv~~~~n~~ei~~~~~~~~~l--Gv~~i~i~p~~~~~~a~ 207 (318)
T TIGR03470 152 VEAIREAKARGFRVTTNTTLFNDTDPEEVAEFFDYLTDL--GVDGMTISPGYAYEKAP 207 (318)
T ss_pred HHHHHHHHHCCCcEEEEEEEeCCCCHHHHHHHHHHHHHc--CCCEEEEecCccccccc
Confidence 999999999999877766542378999999999999999 57888887766654443
No 95
>PRK08629 coproporphyrinogen III oxidase; Provisional
Probab=99.77 E-value=3.2e-17 Score=150.15 Aligned_cols=176 Identities=13% Similarity=0.164 Sum_probs=130.9
Q ss_pred cCCCCcCCCCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHHcC--CcEEEEecccCCCCCCchhHHHHHHHHHHHHhc--
Q 022946 96 TGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAG--STRFCMGAAWRDTIGRKTNFNQILEYVKDIRDM-- 171 (289)
Q Consensus 96 t~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~~g--~~~i~i~~~~~~~~ge~~~~~~l~e~i~~ik~~-- 171 (289)
-+.|+.+|.||.+++... ...... .-.+.+.++++...+.| ++.+.|+||. +... + +.+.++++.+++.
T Consensus 59 IPFC~~~C~yC~f~~~~~-~~~~~~-~Y~~~L~~Ei~~~~~~~~~~~siy~GGGT-Ps~l-~---~~L~~ll~~i~~~f~ 131 (433)
T PRK08629 59 VPFCHTLCPYCSFHRFYF-KEDKAR-AYFISLRKEMEMVKELGYDFESMYVGGGT-TTIL-E---DELAKTLELAKKLFS 131 (433)
T ss_pred eCCccCcCCCCCCcCcCC-CcchHH-HHHHHHHHHHHHHHhcCCceEEEEECCCc-cccC-H---HHHHHHHHHHHHhCC
Confidence 578999999999975321 111111 12577788887766654 5567676643 2221 2 4455555555432
Q ss_pred --CceEEEeCCCCCHHHHHHHHHcCCCeEecCCCch-HHHHhccCCCCCHHHH---HHHHHHHHHcCCceeecEEeec-C
Q 022946 172 --GMEVCCTLGMLEKHQAIELKKAGLTAYNHNLDTS-REFYSKIITTRSYDER---LETLKHVREAGINVCSGGIIGL-G 244 (289)
Q Consensus 172 --~~~i~~~~g~l~~e~l~~L~~aG~~~v~i~let~-~~~~~~i~~~~~~~~~---~~~i~~~~~~Gi~v~~~~i~Gl-g 244 (289)
.+.+.+++..++.+.++.|+++ ++++++|+||+ +++++.+.+.++.+.. ++.++.+++.+..++.++|+|+ |
T Consensus 132 i~eis~E~~P~~lt~e~L~~l~~~-vnrlsiGVQS~~d~vLk~~gR~h~~~~~~~~~~~l~~~~~~~~~v~~DlI~GlPg 210 (433)
T PRK08629 132 IKEVSCESDPNHLDPPKLKQLKGL-IDRLSIGVQSFNDDILKMVDRYEKFGSGQETFEKIMKAKGLFPIINVDLIFNFPG 210 (433)
T ss_pred CceEEEEeCcccCCHHHHHHHHHh-CCeEEEecCcCCHHHHHHcCCCCChhHHHHHHHHHHHHhccCCeEEEEEEccCCC
Confidence 2445677888999999999999 99999999999 9999999998876555 5555555444456899999999 9
Q ss_pred CCHHHHHHHHHHHhcCCCCCCeeeeccceecCCCCCC
Q 022946 245 EAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQ 281 (289)
Q Consensus 245 et~ed~~~~l~~l~~l~~~~~~v~i~~~~p~pgTpl~ 281 (289)
||.+++.++++++.++ +++.+.++++.+.|+|+..
T Consensus 211 qT~e~~~~~l~~~~~l--~p~~is~y~L~~~~~t~~~ 245 (433)
T PRK08629 211 QTDEVLQHDLDIAKRL--DPRQITTYPLMKSHQTRKS 245 (433)
T ss_pred CCHHHHHHHHHHHHhC--CCCEEEEccceeccCchhh
Confidence 9999999999999999 6999999999999999854
No 96
>COG1856 Uncharacterized homolog of biotin synthetase [Function unknown]
Probab=99.75 E-value=3.4e-17 Score=131.47 Aligned_cols=185 Identities=16% Similarity=0.295 Sum_probs=145.4
Q ss_pred cccCCCCcCCCCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHHcCCcEEEEecccCCCCCCchhHHHHHHHHHHHH-hcC
Q 022946 94 IKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIR-DMG 172 (289)
Q Consensus 94 ~~t~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~~g~~~i~i~~~~~~~~ge~~~~~~l~e~i~~ik-~~~ 172 (289)
..++.|.++|.+|...-... .. . .+.+++++...++...|+..+.+.||- +.-| .-.++.+.+.++++| +.+
T Consensus 16 VTG~yC~lnC~HCg~~~L~~-Mi-~---vt~~~l~k~~~el~kkGy~g~llSGGm-~srg-~VPl~kf~d~lK~lke~~~ 88 (275)
T COG1856 16 VTGAYCSLNCPHCGRHYLEH-MI-K---VTTKSLLKRCMELEKKGYEGCLLSGGM-DSRG-KVPLWKFKDELKALKERTG 88 (275)
T ss_pred EeccceEecChHHHHHHHHH-hc-c---cchHHHHHHHHHHHhcCceeEEEeCCc-CCCC-CccHHHHHHHHHHHHHhhC
Confidence 34789999999998642211 11 1 244778888888888999988887654 3333 567889999999999 568
Q ss_pred ceEEEeCCCCCHHHHHHHHHcCCCeEecCCCchHHHHhccCC-CCCHHHHHHHHHHHHHcCCceeecEEeec-CCCHHHH
Q 022946 173 MEVCCTLGMLEKHQAIELKKAGLTAYNHNLDTSREFYSKIIT-TRSYDERLETLKHVREAGINVCSGGIIGL-GEAEEDR 250 (289)
Q Consensus 173 ~~i~~~~g~l~~e~l~~L~~aG~~~v~i~let~~~~~~~i~~-~~~~~~~~~~i~~~~~~Gi~v~~~~i~Gl-get~ed~ 250 (289)
+.+..+.|..+++.++.|+++++|.+++.+=+-.++.+.+-+ .++.+++++.++.+++.|+++..++++|+ .-..+.-
T Consensus 89 l~inaHvGfvdE~~~eklk~~~vdvvsLDfvgDn~vIk~vy~l~ksv~dyl~~l~~L~e~~irvvpHitiGL~~gki~~e 168 (275)
T COG1856 89 LLINAHVGFVDESDLEKLKEELVDVVSLDFVGDNDVIKRVYKLPKSVEDYLRSLLLLKENGIRVVPHITIGLDFGKIHGE 168 (275)
T ss_pred eEEEEEeeeccHHHHHHHHHhcCcEEEEeecCChHHHHHHHcCCccHHHHHHHHHHHHHcCceeceeEEEEeccCcccch
Confidence 888888999999999999999999998766544344444333 67899999999999999999999999999 4444444
Q ss_pred HHHHHHHhcCCCCCCeeeeccceecCCCCCCCCCCCC
Q 022946 251 VGLLHTLATLPTHPESVPINALLAVKGTPLQDQKLKY 287 (289)
Q Consensus 251 ~~~l~~l~~l~~~~~~v~i~~~~p~pgTpl~~~~~~~ 287 (289)
.+.++.|.+. .++.+-+..|+|.|||.|.+.++++
T Consensus 169 ~kaIdiL~~~--~~DalVl~vliPtpGtkm~~~~pp~ 203 (275)
T COG1856 169 FKAIDILVNY--EPDALVLVVLIPTPGTKMGNSPPPP 203 (275)
T ss_pred HHHHHHHhcC--CCCeEEEEEEecCCchhccCCCCcC
Confidence 5667778777 5899999999999999999988876
No 97
>TIGR02493 PFLA pyruvate formate-lyase 1-activating enzyme. An iron-sulfur protein with a radical-SAM domain (pfam04055). A single glycine residue in EC 2.3.1.54, formate C-acetyltransferase (formate-pyruvate lyase), is oxidized to the corresponding radical by transfer of H from its CH2 to AdoMet with concomitant cleavage of the latter. The reaction requires Fe2+. The first stage is reduction of the AdoMet to give methionine and the 5'-deoxyadenosin-5-yl radical, which then abstracts a hydrogen radical from the glycine residue.
Probab=99.75 E-value=1.9e-16 Score=134.47 Aligned_cols=169 Identities=21% Similarity=0.301 Sum_probs=125.4
Q ss_pred cCCCCcCCCCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHHcC---CcEEEEecccCCCCCCchhHHH-HHHHHHHHHhc
Q 022946 96 TGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAG---STRFCMGAAWRDTIGRKTNFNQ-ILEYVKDIRDM 171 (289)
Q Consensus 96 t~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~~g---~~~i~i~~~~~~~~ge~~~~~~-l~e~i~~ik~~ 171 (289)
|.+||++|.||.....+.. .....++++++++++..+.... ...|.|+| |||+...+ +.++++.+++.
T Consensus 22 ~~gCnl~C~~C~~~~~~~~--~~~~~~s~e~i~~~i~~~~~~~~~~~~~I~~~G------GEPll~~~~~~~li~~~~~~ 93 (235)
T TIGR02493 22 MQGCPLRCQYCHNPDTWDL--KGGTEVTPEELIKEVGSYKDFFKASGGGVTFSG------GEPLLQPEFLSELFKACKEL 93 (235)
T ss_pred ECCCCCcCCCCCChhhccC--CCCEECCHHHHHHHHHHhHHHHhcCCCeEEEeC------cccccCHHHHHHHHHHHHHC
Confidence 8899999999986532211 2224479999999888765532 24677776 56655444 55888888877
Q ss_pred CceE-EEeCCCCC--HHHHHHHHHcCCCeEecCCCch-HHHHhccCCCCCHHHHHHHHHHHHHcCCceeecEEe--ecCC
Q 022946 172 GMEV-CCTLGMLE--KHQAIELKKAGLTAYNHNLDTS-REFYSKIITTRSYDERLETLKHVREAGINVCSGGII--GLGE 245 (289)
Q Consensus 172 ~~~i-~~~~g~l~--~e~l~~L~~aG~~~v~i~let~-~~~~~~i~~~~~~~~~~~~i~~~~~~Gi~v~~~~i~--Glge 245 (289)
++.+ ..|||.+. .+.+.++.+ .++.+.+++++. ++.++++++. +++.++++++.+++.|+.+...+++ |..+
T Consensus 94 g~~~~i~TNG~~~~~~~~~~~ll~-~~d~v~isl~~~~~~~~~~~~g~-~~~~v~~~i~~l~~~g~~~~v~~vv~~~~~~ 171 (235)
T TIGR02493 94 GIHTCLDTSGFLGGCTEAADELLE-YTDLVLLDIKHFNPEKYKKLTGV-SLQPTLDFAKYLAKRNKPIWIRYVLVPGYTD 171 (235)
T ss_pred CCCEEEEcCCCCCccHHHHHHHHH-hCCEEEEeCCCCCHHHHHHHHCC-CcHHHHHHHHHHHhCCCcEEEEEeeeCCcCC
Confidence 7654 45788643 566666666 478999999999 9999988765 8899999999999999986655444 4457
Q ss_pred CHHHHHHHHHHHhcCCCCCCeeeeccceec
Q 022946 246 AEEDRVGLLHTLATLPTHPESVPINALLAV 275 (289)
Q Consensus 246 t~ed~~~~l~~l~~l~~~~~~v~i~~~~p~ 275 (289)
+.+++.++++++.+++ ....+.+.+|.|.
T Consensus 172 n~~ei~~l~~~~~~l~-~~~~~~~~p~~~~ 200 (235)
T TIGR02493 172 SEEDIEALAEFVKTLP-NVERVEVLPYHQL 200 (235)
T ss_pred CHHHHHHHHHHHHhCC-CCceEEecCCCcc
Confidence 8899999999999994 1467777777764
No 98
>TIGR01290 nifB nitrogenase cofactor biosynthesis protein NifB. This model describes NifB, a protein required for the biosynthesis of the iron-molybdenum (or iron-vanadium) cofactor used by the nitrogen-fixing enzyme nitrogenase. Archaeal homologs lack the most C-terminal region and score between the trusted and noise cutoffs of this model.
Probab=99.74 E-value=3.1e-16 Score=143.66 Aligned_cols=182 Identities=16% Similarity=0.257 Sum_probs=136.5
Q ss_pred eccccCCCCcCCCCCCCCCC-CCCCC--CCcCCCCHHHHHHHHHHHHHc--CCcEEEEecccCCCCCCchh-HHHHHHHH
Q 022946 92 LSIKTGGCSEDCSYCPQSSR-YDTGV--KGQKLMTKDAVMQAAQKAKEA--GSTRFCMGAAWRDTIGRKTN-FNQILEYV 165 (289)
Q Consensus 92 i~~~t~~C~~~C~fC~~~~~-~~~~~--~~~~~~~~eei~~~~~~~~~~--g~~~i~i~~~~~~~~ge~~~-~~~l~e~i 165 (289)
+.+ |++||.+|.||..... .+... .....++++|+++.++.+.+. ++..|.|.| .|||+. .+.+++.+
T Consensus 28 ~~v-t~~CNl~C~yC~~~~~~~~esrpg~~~~~Ltpee~~~~i~~v~~~~~~~~~V~iaG-----~GEPLl~~e~~~~~l 101 (442)
T TIGR01290 28 LAV-APACNIQCNYCNRKYDCANESRPGVVSELLTPEQALRKARQVAAEIPQLSVVGIAG-----PGDPLANIGKTFQTL 101 (442)
T ss_pred Eec-CCCCCCcCcCCCCCCCCCcCCCCccccccCCHHHHHHHHHHHHHhcCCCCEEEEec-----CCCcccCccccHHHH
Confidence 444 9999999999985421 11111 123458999999999887654 567777776 356644 35677888
Q ss_pred HHHHhc--CceE-EEeCCCCCHHHHHHHHHcCCCeEecCCCch-HHHHhccCC----------CC-----CHHHHHHHHH
Q 022946 166 KDIRDM--GMEV-CCTLGMLEKHQAIELKKAGLTAYNHNLDTS-REFYSKIIT----------TR-----SYDERLETLK 226 (289)
Q Consensus 166 ~~ik~~--~~~i-~~~~g~l~~e~l~~L~~aG~~~v~i~let~-~~~~~~i~~----------~~-----~~~~~~~~i~ 226 (289)
+.+++. ++.+ ..|||.+..+.+++|.++|+|.|.+++++. +++++++.+ +. .++..++.|+
T Consensus 102 ~~~~~~~~~i~i~lsTNG~~l~e~i~~L~~~gvd~V~islka~d~e~~~~Iy~~v~~~g~~~tG~~~~~il~e~~l~~l~ 181 (442)
T TIGR01290 102 ELVARQLPDVKLCLSTNGLMLPEHVDRLVDLGVGHVTITINAIDPAVGEKIYPWVWYEGERYTGREAADLLIERQLEGLE 181 (442)
T ss_pred HHHHHhcCCCeEEEECCCCCCHHHHHHHHHCCCCeEEEeccCCCHHHHhhcchhhccccccccCcchHHHHHHHHHHHHH
Confidence 877754 6665 467998889999999999999999999999 999987631 11 1567789999
Q ss_pred HHHHcCCceeecEEeecCCCHHHHHHHHHHHhcCCCCCCeeeeccceecC--CCCCC
Q 022946 227 HVREAGINVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLAVK--GTPLQ 281 (289)
Q Consensus 227 ~~~~~Gi~v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~i~~~~p~p--gTpl~ 281 (289)
.+.+.|+.+...+++--|.+++++.+++++++++ +...+.+.+|+|.| |+++.
T Consensus 182 ~l~~~G~~v~v~~vlIpGiND~~i~~l~~~~~~l--g~~~~nl~p~~~~p~~G~~~~ 236 (442)
T TIGR01290 182 KLTERGILVKVNSVLIPGINDEHLVEVSKQVKEL--GAFLHNVMPLISAPEHGTVYG 236 (442)
T ss_pred HHHhCCCeEEEEEEeeCCcCHHHHHHHHHHHHhC--CCcEEEeecCCCccccCCccC
Confidence 9999999765554443355668999999999999 56788999999888 88864
No 99
>COG2100 Predicted Fe-S oxidoreductase [General function prediction only]
Probab=99.73 E-value=2e-16 Score=133.76 Aligned_cols=176 Identities=16% Similarity=0.254 Sum_probs=132.7
Q ss_pred cCCCCcCCCCCCCCCCCCCC-CCCcCCCCHHHHHHHHHHHHHcC--CcEEEEecccCCCCCCchhHHHHHHHHHHHHhc-
Q 022946 96 TGGCSEDCSYCPQSSRYDTG-VKGQKLMTKDAVMQAAQKAKEAG--STRFCMGAAWRDTIGRKTNFNQILEYVKDIRDM- 171 (289)
Q Consensus 96 t~~C~~~C~fC~~~~~~~~~-~~~~~~~~~eei~~~~~~~~~~g--~~~i~i~~~~~~~~ge~~~~~~l~e~i~~ik~~- 171 (289)
+.+|+++|.||+.....-.. .......++|.+++..+...+.. .-+.++-| .|||..+..+.++++++++.
T Consensus 114 ~tgCnlnCIfCSVdeGp~SrtR~~dy~Vd~eyLl~w~~kVa~~KgkglEaHlDG-----qGEP~lYP~l~~lVqalk~~~ 188 (414)
T COG2100 114 STGCNLNCIFCSVDEGPYSRTRKLDYVVDPEYLLEWFEKVARFKGKGLEAHLDG-----QGEPLLYPHLVDLVQALKEHK 188 (414)
T ss_pred CccccceeEEEeccCCcccceeccceEecHHHHHHHHHHHHhhhCCCeEEEecC-----CCCCccchhHHHHHHHHhcCC
Confidence 77999999999876432111 12233468899998887776543 23455654 47898999999999999954
Q ss_pred CceE---EEeCCCCCHHHHHHHHHcCCCeEecCCCch-HHHHhccCC--CCCHHHHHHHHHHHHHcCCceeecEEeecCC
Q 022946 172 GMEV---CCTLGMLEKHQAIELKKAGLTAYNHNLDTS-REFYSKIIT--TRSYDERLETLKHVREAGINVCSGGIIGLGE 245 (289)
Q Consensus 172 ~~~i---~~~~g~l~~e~l~~L~~aG~~~v~i~let~-~~~~~~i~~--~~~~~~~~~~i~~~~~~Gi~v~~~~i~Glge 245 (289)
++++ .++.+.++.+.+++|.+||+|++++|+++. ++.-+.+.+ ..+.+.+++.++++..+|+.+-..=+.-.|-
T Consensus 189 ~v~vVSmQTng~~L~~~lv~eLeeAGLdRiNlSv~aLDpk~Ak~L~G~~dYdv~kvle~aE~i~~a~idvlIaPv~lPG~ 268 (414)
T COG2100 189 GVEVVSMQTNGVLLSKKLVDELEEAGLDRINLSVDALDPKLAKMLAGRKDYDVKKVLEVAEYIANAGIDVLIAPVWLPGV 268 (414)
T ss_pred CceEEEEeeCceeccHHHHHHHHHhCCceEEeecccCCHHHHHHhcCccccCHHHHHHHHHHHHhCCCCEEEeeeecCCc
Confidence 5553 334446899999999999999999999999 888777776 4578999999999999999854433222255
Q ss_pred CHHHHHHHHHHHhcCCC--CCCeeeeccceecC
Q 022946 246 AEEDRVGLLHTLATLPT--HPESVPINALLAVK 276 (289)
Q Consensus 246 t~ed~~~~l~~l~~l~~--~~~~v~i~~~~p~p 276 (289)
+++++...++|.++++. +...+++..|+|++
T Consensus 269 ND~E~~~iIe~A~~iGaGkk~p~lgiQkyipyk 301 (414)
T COG2100 269 NDDEMPKIIEWAREIGAGKKWPPLGIQKYIPYK 301 (414)
T ss_pred ChHHHHHHHHHHHHhCCCCCCCCcceEEeeeec
Confidence 67899999999999865 34567788888875
No 100
>COG1242 Predicted Fe-S oxidoreductase [General function prediction only]
Probab=99.72 E-value=4.1e-16 Score=129.55 Aligned_cols=201 Identities=19% Similarity=0.304 Sum_probs=142.9
Q ss_pred HHHHHHHHhhhCCCeeEEeEeeccccCCCCc--------CCCCCCCCCCCCCCCCCcCCCCH-HHHHHHHHHHHH-cCC-
Q 022946 71 FHGAQVHRHAHNFREVQQCTLLSIKTGGCSE--------DCSYCPQSSRYDTGVKGQKLMTK-DAVMQAAQKAKE-AGS- 139 (289)
Q Consensus 71 ~~a~~~~r~~~~g~~~~~~~~i~~~t~~C~~--------~C~fC~~~~~~~~~~~~~~~~~~-eei~~~~~~~~~-~g~- 139 (289)
+....-.|++ +|.+++=.+ +.. +-.||+ .|.||+...... ....+..+. +++.+.++.+.+ .+-
T Consensus 9 ~t~~~~lr~~-fg~Kv~Kv~-ld~-GF~CPNRDGti~rGGCtFC~~~g~~d--~~~~~~~~i~~Q~~~q~~~~~kK~~~~ 83 (312)
T COG1242 9 YTLNDYLREK-FGEKVFKVT-LDG-GFSCPNRDGTIGRGGCTFCSVAGSGD--FAGQPKISIAEQFKEQAERMHKKWKRG 83 (312)
T ss_pred HHHHHHHHHH-hCCeeEEEe-ccC-CCCCCCCCCcccCCceeeecCCCCCc--cccCcccCHHHHHHHHHHHHHHhhcCC
Confidence 3334445666 388776422 333 668997 599997653211 112233454 445555554433 222
Q ss_pred cE-EEEecccCCCCCCchhHHHHHHHHHH-HHh---cCceEEEeCCCCCHHHHHHHHHcCC---CeEecCCCch-HHHHh
Q 022946 140 TR-FCMGAAWRDTIGRKTNFNQILEYVKD-IRD---MGMEVCCTLGMLEKHQAIELKKAGL---TAYNHNLDTS-REFYS 210 (289)
Q Consensus 140 ~~-i~i~~~~~~~~ge~~~~~~l~e~i~~-ik~---~~~~i~~~~g~l~~e~l~~L~~aG~---~~v~i~let~-~~~~~ 210 (289)
+. +.|+.. .+++. ..+.+.+..+. +.. .|+.|.+.+..+++++++.|.+..- -+|.+|++|+ +++.+
T Consensus 84 kyiaYFQ~~-TNTyA---pvevLre~ye~aL~~~~VVGLsIgTRPDClpd~VldlL~e~~~r~~vWvELGLQT~h~~Tlk 159 (312)
T COG1242 84 KYIAYFQAY-TNTYA---PVEVLREMYEQALSEAGVVGLSIGTRPDCLPDDVLDLLAEYNKRYEVWVELGLQTAHDKTLK 159 (312)
T ss_pred cEEEEEecc-ccccC---cHHHHHHHHHHHhCcCCeeEEeecCCCCCCcHHHHHHHHHHhhheEEEEEeccchhhHHHHH
Confidence 22 345543 34544 33444444433 222 3666777888999999988887632 2566899999 99999
Q ss_pred ccCCCCCHHHHHHHHHHHHHcCCceeecEEeec-CCCHHHHHHHHHHHhcCCCCCCeeeeccceecCCCCCCC
Q 022946 211 KIITTRSYDERLETLKHVREAGINVCSGGIIGL-GEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQD 282 (289)
Q Consensus 211 ~i~~~~~~~~~~~~i~~~~~~Gi~v~~~~i~Gl-get~ed~~~~l~~l~~l~~~~~~v~i~~~~p~pgTpl~~ 282 (289)
.++++++++.+.++++.+++.||+|++++|+|+ ||+.++..++++.+..+ +++.|-++++...+||||+.
T Consensus 160 ~iNRgHd~~~y~dav~r~rkrgIkvc~HiI~GLPgE~~~~mleTak~v~~~--~v~GIKlH~LhvvkgT~m~k 230 (312)
T COG1242 160 RINRGHDFACYVDAVKRLRKRGIKVCTHLINGLPGETRDEMLETAKIVAEL--GVDGIKLHPLHVVKGTPMEK 230 (312)
T ss_pred HHhcccchHHHHHHHHHHHHcCCeEEEEEeeCCCCCCHHHHHHHHHHHHhc--CCceEEEEEEEEecCChHHH
Confidence 999999999999999999999999999999999 99999999999999999 68999999999999999975
No 101
>COG1243 ELP3 Histone acetyltransferase [Transcription / Chromatin structure and dynamics]
Probab=99.72 E-value=3e-16 Score=138.66 Aligned_cols=195 Identities=17% Similarity=0.305 Sum_probs=139.2
Q ss_pred CeeEEeEeeccccCCCCc-CCCCCCCC------CCCCCCCC-------CcCCCCHHHHHHHHHHHHHcCCc----EEEEe
Q 022946 84 REVQQCTLLSIKTGGCSE-DCSYCPQS------SRYDTGVK-------GQKLMTKDAVMQAAQKAKEAGST----RFCMG 145 (289)
Q Consensus 84 ~~~~~~~~i~~~t~~C~~-~C~fC~~~------~~~~~~~~-------~~~~~~~eei~~~~~~~~~~g~~----~i~i~ 145 (289)
..+++.+++-- -.+||+ +|.||... +.+ ++.. +..+-+-.++...++.+...|-+ ++.|.
T Consensus 63 sgvaVVaVmt~-p~~CPHg~CvfCpgg~~~~spQSy-tg~ep~~~R~~~~~ydpY~q~~~Rl~qL~~igh~~~KvEliim 140 (515)
T COG1243 63 SGVAVVAVMTS-PHGCPHGRCVFCPGGPDKDSPQSY-TGEEPAALRAIKNRYDPYEQVRARLKQLETIGHTSDKVELIIM 140 (515)
T ss_pred ccceEEEEecC-CCCCCCCeEEeCCCCCCCCCCccc-CCCCchhhhHhhccCCcHHHHHHHHHHHHHcCCCcceEEEEEe
Confidence 33444444432 569998 99999765 222 1111 12334678888888989887733 24444
Q ss_pred cccCCCCCCch-hHHHHHHHHHH-HH-------------------hcCceEEEeCCCCCHHHHHHHHHcCCCeEecCCCc
Q 022946 146 AAWRDTIGRKT-NFNQILEYVKD-IR-------------------DMGMEVCCTLGMLEKHQAIELKKAGLTAYNHNLDT 204 (289)
Q Consensus 146 ~~~~~~~ge~~-~~~~l~e~i~~-ik-------------------~~~~~i~~~~g~l~~e~l~~L~~aG~~~v~i~let 204 (289)
||. ++ +-+. ..++++..+.. +. -.|+.+.+.+...+++.++.|++.|++.|.+|+||
T Consensus 141 GGT-Ft-a~~~~yqe~Fi~~~~~amn~f~~~le~a~~~ne~~~~r~vgitiETRPD~~~ee~ld~mlkyG~TrVELGVQS 218 (515)
T COG1243 141 GGT-FT-ALSLEYQEWFLKVALKAMNDFGYDLEEAQRKNETAELRCVGITIETRPDYIDEEHLDQMLKYGVTRVELGVQS 218 (515)
T ss_pred ccc-cc-CCCHHHHHHHHHHHHHhhhccchhHHHHHHhhcccccceeEEEEecCccccCHHHHHHHHhcCCcEEEEeeee
Confidence 443 33 3332 22333333221 11 12455667788899999999999999999999999
Q ss_pred h-HHHHhccCCCCCHHHHHHHHHHHHHcCCceeecEEeec-CCCHHHHHHHHHHHhcCCC-CCCeeeeccceecCCCCCC
Q 022946 205 S-REFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGL-GEAEEDRVGLLHTLATLPT-HPESVPINALLAVKGTPLQ 281 (289)
Q Consensus 205 ~-~~~~~~i~~~~~~~~~~~~i~~~~~~Gi~v~~~~i~Gl-get~ed~~~~l~~l~~l~~-~~~~v~i~~~~p~pgTpl~ 281 (289)
. +++++...++++.+++.++-+.++++|++++.++|.|+ |.+.+--.++...+-+.+. +||.+.|++....+||+|+
T Consensus 219 iyd~Vl~~~~RGHtvedv~~a~rLlKd~GfKv~~HiMpGLPgs~~erDl~~f~~~f~~p~f~PDmlKIYPtLVi~gT~Ly 298 (515)
T COG1243 219 IYDDVLERTKRGHTVEDVVEATRLLKDAGFKVGYHIMPGLPGSDFERDLESFREIFEDPRFRPDMLKIYPTLVIEGTELY 298 (515)
T ss_pred HHHHHHHHhcCCccHHHHHHHHHHHHhcCcEEEEEecCCCCCCChHHHHHHHHHHHhCCCCCCCeEEEeeeEEECCchHH
Confidence 9 99999999999999999999999999999999999999 8877743344444433321 5899999999999999987
Q ss_pred C
Q 022946 282 D 282 (289)
Q Consensus 282 ~ 282 (289)
+
T Consensus 299 ~ 299 (515)
T COG1243 299 E 299 (515)
T ss_pred H
Confidence 5
No 102
>PRK11145 pflA pyruvate formate lyase-activating enzyme 1; Provisional
Probab=99.70 E-value=1.6e-15 Score=129.63 Aligned_cols=172 Identities=15% Similarity=0.212 Sum_probs=127.7
Q ss_pred cCCCCcCCCCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHHc---CCcEEEEecccCCCCCCchhHHH-HHHHHHHHHhc
Q 022946 96 TGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEA---GSTRFCMGAAWRDTIGRKTNFNQ-ILEYVKDIRDM 171 (289)
Q Consensus 96 t~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~~---g~~~i~i~~~~~~~~ge~~~~~~-l~e~i~~ik~~ 171 (289)
+.|||++|.||........ ...+.++++++++.+...... ....|+|+| |||+...+ +.++++.+++.
T Consensus 27 ~~gCnl~C~~C~~~~~~~~--~~~~~lt~eei~~~i~~~~~~~~~~~~~V~~sG------GEPll~~~~~~~l~~~~k~~ 98 (246)
T PRK11145 27 FQGCLMRCLYCHNRDTWDT--HGGKEVTVEELMKEVVTYRHFMNASGGGVTASG------GEAILQAEFVRDWFRACKKE 98 (246)
T ss_pred ECCCCCcCCCCCCHHHCCC--CCCeEcCHHHHHHHHHHhHHHHhcCCCeEEEeC------ccHhcCHHHHHHHHHHHHHc
Confidence 7899999999986532211 122347999999988765432 234677765 67765545 56888989887
Q ss_pred CceE-EEeCCCCC--HHHHHHHHHcCCCeEecCCCch-HHHHhccCCCCCHHHHHHHHHHHHHcCCceee--cEEeecCC
Q 022946 172 GMEV-CCTLGMLE--KHQAIELKKAGLTAYNHNLDTS-REFYSKIITTRSYDERLETLKHVREAGINVCS--GGIIGLGE 245 (289)
Q Consensus 172 ~~~i-~~~~g~l~--~e~l~~L~~aG~~~v~i~let~-~~~~~~i~~~~~~~~~~~~i~~~~~~Gi~v~~--~~i~Glge 245 (289)
|+.+ ..|+|.+. .+.++.+.+. +|.|.+++++. ++.++.+.+. +.+..++.++.+.+.|+++.. .++-|+.+
T Consensus 99 g~~i~l~TNG~~~~~~~~~~~ll~~-~d~v~islk~~~~e~~~~~~g~-~~~~~l~~i~~l~~~g~~v~i~~~li~g~nd 176 (246)
T PRK11145 99 GIHTCLDTNGFVRRYDPVIDELLDV-TDLVMLDLKQMNDEIHQNLVGV-SNHRTLEFARYLAKRNQKTWIRYVVVPGWTD 176 (246)
T ss_pred CCCEEEECCCCCCcchHHHHHHHHh-CCEEEECCCcCChhhcccccCC-ChHHHHHHHHHHHhCCCcEEEEEEEECCCCC
Confidence 8775 45788753 5777887764 89999999999 9999988764 457889999999999987554 45556678
Q ss_pred CHHHHHHHHHHHhcCCCCCCeeeeccceecCCC
Q 022946 246 AEEDRVGLLHTLATLPTHPESVPINALLAVKGT 278 (289)
Q Consensus 246 t~ed~~~~l~~l~~l~~~~~~v~i~~~~p~pgT 278 (289)
+++++.++++++..++ .+..+.+.+|.|.++.
T Consensus 177 ~~~ei~~l~~~l~~l~-~~~~~~l~~~~~~~~~ 208 (246)
T PRK11145 177 DDDSAHRLGEFIKDMG-NIEKIELLPYHELGKH 208 (246)
T ss_pred CHHHHHHHHHHHHhcC-CcceEEEecCCccchh
Confidence 8889999999999884 3567778888877644
No 103
>PRK13762 tRNA-modifying enzyme; Provisional
Probab=99.69 E-value=2.3e-15 Score=132.72 Aligned_cols=182 Identities=19% Similarity=0.300 Sum_probs=132.8
Q ss_pred eEeeccccCCCCcCCCCCCCCCCCCCC--CCCcCCCCHHHHHHHHHHHHH---c---C--------------CcEEEEec
Q 022946 89 CTLLSIKTGGCSEDCSYCPQSSRYDTG--VKGQKLMTKDAVMQAAQKAKE---A---G--------------STRFCMGA 146 (289)
Q Consensus 89 ~~~i~~~t~~C~~~C~fC~~~~~~~~~--~~~~~~~~~eei~~~~~~~~~---~---g--------------~~~i~i~~ 146 (289)
+..+.....+|+++|.||..+.....+ .......++++|++++..... . | .+.+.|++
T Consensus 58 c~q~~P~~~~C~~rC~fC~r~~~~~~~~~~~~~~~~~peeiv~~~~~~~~~~i~g~~g~~~v~~~~~~ea~~~~~v~iSl 137 (322)
T PRK13762 58 CVQMTPVVAWCNQRCLFCWRPLEEDVGLELKEPEWDDPEEIVEESIKEQRKLLSGYKGNPKVDREKFEEAMEPKHVAISL 137 (322)
T ss_pred eeccCchhHHHhccCceeeccCCCCcccccCCCCCCCHHHHHHHHHHHHHHHhhccCCCCCCCHHHhhhccCCCEEEEeC
Confidence 334444244599999999875432211 122345789999998865421 1 2 24566665
Q ss_pred ccCCCCCCchhHHHHHHHHHHHHhcCceE-EEeCCCCCHHHHHHHHHcCCCeEecCCCch-HHHHhccCCC---CCHHHH
Q 022946 147 AWRDTIGRKTNFNQILEYVKDIRDMGMEV-CCTLGMLEKHQAIELKKAGLTAYNHNLDTS-REFYSKIITT---RSYDER 221 (289)
Q Consensus 147 ~~~~~~ge~~~~~~l~e~i~~ik~~~~~i-~~~~g~l~~e~l~~L~~aG~~~v~i~let~-~~~~~~i~~~---~~~~~~ 221 (289)
.|||+..+++.++++.+++.|+.+ ..|||.+ .+.++.| .++++.+.+++++. ++.|++++++ .+++.+
T Consensus 138 -----~GEPlL~p~l~eli~~~k~~Gi~~~L~TNG~~-~e~l~~L-~~~~d~i~VSLda~~~e~~~~i~~~~~~~~~~~v 210 (322)
T PRK13762 138 -----SGEPTLYPYLPELIEEFHKRGFTTFLVTNGTR-PDVLEKL-EEEPTQLYVSLDAPDEETYKKINRPVIPDAWERI 210 (322)
T ss_pred -----CccccchhhHHHHHHHHHHcCCCEEEECCCCC-HHHHHHH-HhcCCEEEEEccCCCHHHHHHHhCCCCCCcHHHH
Confidence 378888889999999999888875 4678976 6788888 77899999999999 9999999763 589999
Q ss_pred HHHHHHHHHcCCceeecEEeecCCCHHHHHHHHHHHhcCCCCCCeeeeccceecCCCC
Q 022946 222 LETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTP 279 (289)
Q Consensus 222 ~~~i~~~~~~Gi~v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~i~~~~p~pgTp 279 (289)
+++++.+++.|..+...+.+--|.+..+..+.++++.++ +++.+.+.+|+|.....
T Consensus 211 l~~L~~l~~~~~~~~ir~tlv~g~Nd~e~~~~a~l~~~~--~~~~Iel~~y~~~G~~k 266 (322)
T PRK13762 211 LETLELLPSKKTRTVIRITLVKGYNMHDPEGFAKLIERA--NPDFVEVKAYMHVGYSR 266 (322)
T ss_pred HHHHHHHHhCCCCEEEEEEEECCcCccHHHHHHHHHHHc--CCCEEEEECCeECCCcc
Confidence 999999999988754443332234444445888888888 68999999998876653
No 104
>TIGR02495 NrdG2 anaerobic ribonucleoside-triphosphate reductase activating protein. This enzyme is a member of the radical-SAM family (pfam04055). It is often gene clustered with the class III (anaerobic) ribonucleotide triphosphate reductase (NrdD, TIGR02487) and presumably fulfills the identical function as NrdG which utilizes S-adenosyl methionine, an iron-sulfur cluster and a reductant (dihydroflavodoxin) to produce a glycine-centered radical in NrdD.
Probab=99.69 E-value=4.3e-15 Score=122.15 Aligned_cols=154 Identities=18% Similarity=0.305 Sum_probs=114.3
Q ss_pred cCCCCcCCCCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHHcCCcEEEEecccCCCCCCchhHHHHHHHHHHHHhcCceE
Q 022946 96 TGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMGMEV 175 (289)
Q Consensus 96 t~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~~g~~~i~i~~~~~~~~ge~~~~~~l~e~i~~ik~~~~~i 175 (289)
|++||++|.||..+... .......++.+++.+.++.... .++.|.|.| |||....++.++++.+++.++.+
T Consensus 23 t~~Cnl~C~~C~~~~~~--~~~~~~~~~~~~i~~~i~~~~~-~~~~i~~sG------GEPll~~~l~~li~~~~~~g~~v 93 (191)
T TIGR02495 23 FQGCNLKCPYCHNPELI--DREGSGEIEVEFLLEFLRSRQG-LIDGVVITG------GEPTLQAGLPDFLRKVRELGFEV 93 (191)
T ss_pred cCCCCCCCCCCCCcccc--CCCCCCcCCHHHHHHHHHHhcC-CCCeEEEEC------CcccCcHhHHHHHHHHHHCCCeE
Confidence 99999999999876321 1122344899999999876532 366787776 56666666888888888777765
Q ss_pred -EEeCCCCCHHHHHHHHHcC-CCeEecCCCchHHHHhccCC-CCCHH-HHHHHHHHHHHcCCceeecEEe--ecCCCHHH
Q 022946 176 -CCTLGMLEKHQAIELKKAG-LTAYNHNLDTSREFYSKIIT-TRSYD-ERLETLKHVREAGINVCSGGII--GLGEAEED 249 (289)
Q Consensus 176 -~~~~g~l~~e~l~~L~~aG-~~~v~i~let~~~~~~~i~~-~~~~~-~~~~~i~~~~~~Gi~v~~~~i~--Glget~ed 249 (289)
..+||. +.+.++++.++| ++.+.+++++.++.+..+.+ +..++ +++++++.+++.|+.+...+++ |..+ .++
T Consensus 94 ~i~TNg~-~~~~l~~l~~~g~~~~v~isl~~~~~~~~~~~g~~~~~~~~~~~~i~~l~~~gi~~~i~~~v~~~~~~-~~e 171 (191)
T TIGR02495 94 KLDTNGS-NPRVLEELLEEGLVDYVAMDVKAPPEKYPELYGLEKNGSNNILKSLEILLRSGIPFELRTTVHRGFLD-EED 171 (191)
T ss_pred EEEeCCC-CHHHHHHHHhcCCCcEEEEeccCChHHHHHHHCCCCchHHHHHHHHHHHHHcCCCEEEEEEEeCCCCC-HHH
Confidence 356886 578889999998 69999999988566666644 45665 9999999999999976554443 5533 678
Q ss_pred HHHHHHHHhcC
Q 022946 250 RVGLLHTLATL 260 (289)
Q Consensus 250 ~~~~l~~l~~l 260 (289)
+.++++++.++
T Consensus 172 i~~~~~~l~~~ 182 (191)
T TIGR02495 172 LAEIATRIKEN 182 (191)
T ss_pred HHHHHHHhccC
Confidence 99999999877
No 105
>TIGR03822 AblA_like_2 lysine-2,3-aminomutase-related protein. Members of this protein form a distinctive clade, homologous to lysine-2,3-aminomutase (of Bacillus, Clostridium, and methanogenic archaea) and likely similar in function. Members of this family are found in Rhodopseudomonas, Caulobacter crescentus, Bradyrhizobium, etc.
Probab=99.66 E-value=2.7e-15 Score=132.52 Aligned_cols=173 Identities=13% Similarity=0.134 Sum_probs=127.7
Q ss_pred eeccccCCCCcCCCCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHHc-CCcEEEEecccCCCCCCchh--HHHHHHHHHH
Q 022946 91 LLSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEA-GSTRFCMGAAWRDTIGRKTN--FNQILEYVKD 167 (289)
Q Consensus 91 ~i~~~t~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~~-g~~~i~i~~~~~~~~ge~~~--~~~l~e~i~~ 167 (289)
++.+ |++|+.+|+||......+ ......++.+++.+.++.+.+. ++..|.|+||+ |.. .+++.++++.
T Consensus 91 ll~v-T~~C~~~Cr~C~r~~~~~--~~~~~~l~~~e~~~~i~~i~~~~~I~~VilSGGD------Pl~~~~~~L~~ll~~ 161 (321)
T TIGR03822 91 LLKP-VHVCPVYCRFCFRREMVG--PEGLGVLSPAELDAAFAYIADHPEIWEVILTGGD------PLVLSPRRLGDIMAR 161 (321)
T ss_pred EEEe-cCCCCCcCcCCCchhhcC--CcccCcCCHHHHHHHHHHHHhCCCccEEEEeCCC------cccCCHHHHHHHHHH
Confidence 3445 999999999998753221 1122336788888888888754 89999888743 432 3567777777
Q ss_pred HHhcC-c---eEEE-----eCCCCCHHHHHHHHHcCCCeEecCCCch-HHHHhccCCCCCHHHHHHHHHHHHHcCCceee
Q 022946 168 IRDMG-M---EVCC-----TLGMLEKHQAIELKKAGLTAYNHNLDTS-REFYSKIITTRSYDERLETLKHVREAGINVCS 237 (289)
Q Consensus 168 ik~~~-~---~i~~-----~~g~l~~e~l~~L~~aG~~~v~i~let~-~~~~~~i~~~~~~~~~~~~i~~~~~~Gi~v~~ 237 (289)
+++.+ + .+.+ ++..++++.++.|+++|+ .+.+++++. ++.. .++.+++++.++++|+.+..
T Consensus 162 l~~i~~v~~iri~Tr~~v~~p~rit~ell~~L~~~g~-~v~i~l~~~h~~el--------~~~~~~ai~~L~~~Gi~v~~ 232 (321)
T TIGR03822 162 LAAIDHVKIVRFHTRVPVADPARVTPALIAALKTSGK-TVYVALHANHAREL--------TAEARAACARLIDAGIPMVS 232 (321)
T ss_pred HHhCCCccEEEEeCCCcccChhhcCHHHHHHHHHcCC-cEEEEecCCChhhc--------CHHHHHHHHHHHHcCCEEEE
Confidence 77543 2 3332 223478999999999995 578899886 4321 48899999999999998765
Q ss_pred cEE--eecCCCHHHHHHHHHHHhcCCCCCCeeeeccceecCCCCCCCC
Q 022946 238 GGI--IGLGEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQ 283 (289)
Q Consensus 238 ~~i--~Glget~ed~~~~l~~l~~l~~~~~~v~i~~~~p~pgTpl~~~ 283 (289)
..+ -|.+++.+++.++++++.++ ++....++.+.|.+||..+..
T Consensus 233 q~vLl~gvNd~~~~l~~l~~~l~~~--gv~pyyl~~~~p~~g~~~f~~ 278 (321)
T TIGR03822 233 QSVLLRGVNDDPETLAALMRAFVEC--RIKPYYLHHLDLAPGTAHFRV 278 (321)
T ss_pred EeeEeCCCCCCHHHHHHHHHHHHhc--CCeeEEEEecCCCCCcccccC
Confidence 433 37799999999999999999 678888999999999876653
No 106
>PRK14459 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=99.66 E-value=2.7e-14 Score=127.03 Aligned_cols=178 Identities=17% Similarity=0.292 Sum_probs=136.4
Q ss_pred eccccCCCCcCCCCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHH---c------C--CcEEEEecccCCCCCCch-hHH
Q 022946 92 LSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKE---A------G--STRFCMGAAWRDTIGRKT-NFN 159 (289)
Q Consensus 92 i~~~t~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~---~------g--~~~i~i~~~~~~~~ge~~-~~~ 159 (289)
|+. +-||+.+|.||+... .+ -.+.++++||+..+..+.. . | ++.|+|.| .|||+ +++
T Consensus 125 vSs-QvGC~m~C~FCatg~---~g--~~RnLt~~EIv~Qv~~~~~~~~~~~~~~~~~~i~nVvfmG-----mGEPLlN~d 193 (373)
T PRK14459 125 ISS-QAGCGMACPFCATGQ---GG--LTRNLSTAEIVEQVRAAARALRDGEVPGGPGRLSNVVFMG-----MGEPLANYK 193 (373)
T ss_pred EEe-cCCCCCcCCCCCCCC---CC--CCCccCHHHHHHHHHHHHHHhhhcccccCCCceeEEEEec-----CCcchhhHH
Confidence 454 789999999998653 12 2345899999999876643 1 1 56788877 47886 589
Q ss_pred HHHHHHHHHHh-----cCc---eEEE-eCCCCCHHHHHHHHHcCCC-eEecCCCch-HHHHhccCCC---CCHHHHHHHH
Q 022946 160 QILEYVKDIRD-----MGM---EVCC-TLGMLEKHQAIELKKAGLT-AYNHNLDTS-REFYSKIITT---RSYDERLETL 225 (289)
Q Consensus 160 ~l~e~i~~ik~-----~~~---~i~~-~~g~l~~e~l~~L~~aG~~-~v~i~let~-~~~~~~i~~~---~~~~~~~~~i 225 (289)
.+.++++.+++ .++ .+.+ |.|.. ..+++|.+.+++ .+.+||.+. ++.++++.|. .+.+++++++
T Consensus 194 ~V~~~i~~l~~~~~~g~gis~r~ITvST~Gl~--~~i~~la~~~l~~~LavSLha~d~e~R~~l~p~n~~~~l~~ll~a~ 271 (373)
T PRK14459 194 RVVAAVRRITAPAPEGLGISARNVTVSTVGLV--PAIRKLADEGLPVTLAVSLHAPDDELRDELVPVNTRWKVDEVLDAA 271 (373)
T ss_pred HHHHHHHHHhCcccccCCccCCEEEEECcCch--hHHHHHHHhcCCeEEEEEeCCCCHHHHHHhcCcccCCCHHHHHHHH
Confidence 99999999875 355 4433 46653 467888888886 799999999 9999999983 5789999997
Q ss_pred HHH-HHcCCceee--cEEeecCCCHHHHHHHHHHHhcCCCCCCeeeeccceecCCCCCCC
Q 022946 226 KHV-REAGINVCS--GGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQD 282 (289)
Q Consensus 226 ~~~-~~~Gi~v~~--~~i~Glget~ed~~~~l~~l~~l~~~~~~v~i~~~~p~pgTpl~~ 282 (289)
+.. ++.|..+.. .+|-|+.++++|..++.++++.+......|.+.+|.|.++.++..
T Consensus 272 ~~~~~~~grrv~ieyvLi~GvNDs~e~a~~L~~llk~~~~~~~~VNLIpyNp~~~~~y~~ 331 (373)
T PRK14459 272 RYYADATGRRVSIEYALIRDINDQPWRADLLGKKLHGRGGGWVHVNLIPLNPTPGSKWTA 331 (373)
T ss_pred HHHHHHhCCEEEEEEEEeCCCCCCHHHHHHHHHHHhhccCCCeEEEEEccCCCCCCCCcC
Confidence 775 467877554 556688999999999999999873225689999999999887654
No 107
>PRK14456 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=99.65 E-value=1.7e-14 Score=128.80 Aligned_cols=175 Identities=18% Similarity=0.302 Sum_probs=132.8
Q ss_pred eeccccCCCCcCCCCCCCCCCCCCCCCCcCCCCHHHHHHHHHHH--------HHcCCcEEEEecccCCCCCCchh-HHHH
Q 022946 91 LLSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKA--------KEAGSTRFCMGAAWRDTIGRKTN-FNQI 161 (289)
Q Consensus 91 ~i~~~t~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~--------~~~g~~~i~i~~~~~~~~ge~~~-~~~l 161 (289)
.++. +.|||.+|.||..... +. .+.++.+||++.+..+ ...+++.|+|.| .|||+. ++.+
T Consensus 124 ciSs-q~GCnl~C~FC~tg~~---g~--~rnLt~~EI~~qv~~~~~~~~~~~~~~~v~nIvfmG-----mGEPLln~d~v 192 (368)
T PRK14456 124 CISS-QAGCALRCSFCATGQM---GF--RRNLTAGEITGQVFALSDMLAERNRERGITNIVFMG-----MGEPLLNTDNV 192 (368)
T ss_pred EEEe-cCCCCCCCCCCCCCCC---CC--CCCCCHHHHHHHHHHHHHHHHhhhccCCccEEEEeC-----cCccccCHHHH
Confidence 4565 8899999999986531 22 2347889998886432 135688999987 477854 4569
Q ss_pred HHHHHHHHhc----Cc---eE-EEeCCCCCHHHHHHHHHcCCC-eEecCCCch-HHHHhccCC----CCCHHHHHHHHHH
Q 022946 162 LEYVKDIRDM----GM---EV-CCTLGMLEKHQAIELKKAGLT-AYNHNLDTS-REFYSKIIT----TRSYDERLETLKH 227 (289)
Q Consensus 162 ~e~i~~ik~~----~~---~i-~~~~g~l~~e~l~~L~~aG~~-~v~i~let~-~~~~~~i~~----~~~~~~~~~~i~~ 227 (289)
.++++.+++. ++ .+ .+|+|. .+ .+++|.++|++ .+.+|+++. ++.++++.| ..++++++++++.
T Consensus 193 ~~~i~~l~~~~~~~~is~r~ItisT~Gl-~~-~i~~L~~~gl~~~LaiSL~a~~~e~r~~i~P~~~~~~~l~~l~~~i~~ 270 (368)
T PRK14456 193 FEAVLTLSTRKYRFSISQRKITISTVGI-TP-EIDRLATSGLKTKLAVSLHSADQEKRERLMPQAARDYPLDELREALIG 270 (368)
T ss_pred HHHHHHHhccccccCcCcCeeEEECCCC-hH-HHHHHHHcCCCceEEEEecCCCHHHHHHhccccCCCCCHHHHHHHHHH
Confidence 9999888743 22 23 455774 33 47999999996 899999999 999999974 4478999999985
Q ss_pred -HHHcCCce--eecEEeecCCCHHHHHHHHHHHhcCCCCCCeeeeccceecCCCCCC
Q 022946 228 -VREAGINV--CSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQ 281 (289)
Q Consensus 228 -~~~~Gi~v--~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~i~~~~p~pgTpl~ 281 (289)
+.+.|..+ .+.+|-|+.++.+|+.+++++++.+ +..|.+.+|.|.++.++.
T Consensus 271 ~~~~~g~~V~ieyvLI~GvNDs~eda~~L~~~l~~~---~~~VnlIpyn~~~~~~~~ 324 (368)
T PRK14456 271 YASKTGEPVTLVYMLLEGINDSPEDARKLIRFASRF---FCKINLIDYNSIVNIKFE 324 (368)
T ss_pred HHHhcCCeEEEEEEEEcCCCCCHHHHHHHHHHHhcC---CCeeEEeeeccCCCCCCC
Confidence 67778764 4556668899999999999999987 457888888888888765
No 108
>PRK14460 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=99.64 E-value=2.6e-14 Score=127.29 Aligned_cols=171 Identities=17% Similarity=0.332 Sum_probs=130.2
Q ss_pred cCCCCcCCCCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHH----Hc--C---CcEEEEecccCCCCCCch-hHHHHHHHH
Q 022946 96 TGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAK----EA--G---STRFCMGAAWRDTIGRKT-NFNQILEYV 165 (289)
Q Consensus 96 t~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~----~~--g---~~~i~i~~~~~~~~ge~~-~~~~l~e~i 165 (289)
..||+.+|.||..... + ..+.++++||++.+.... .. | ++.|+|.| .|||+ .++.+.+++
T Consensus 109 q~GC~~~C~FC~tg~~---g--~~rnlt~~EI~~qv~~~~~~~~~~g~g~~~i~nIvfmG-----mGEPLln~~~v~~~l 178 (354)
T PRK14460 109 QVGCAMGCTFCSTGTM---G--FERNMTMGEILGQVLVAREHLGDNGPDHPILRNLVFMG-----MGEPLLNLDEVMRSL 178 (354)
T ss_pred CCCcCCCCccCCCCCC---C--CCcCCCHHHHHHHHHHHHHHHhhccCCCcceeEEEEec-----CCcccCCHHHHHHHH
Confidence 6799999999976531 1 234589999999984332 12 3 57788877 35663 567888999
Q ss_pred HHHHh-cCc-----eE-EEeCCCCCHHHHHHHHHcCCCeEecCCCch-HHHHhccCCC---CCHHHHHHHHHHH-HHcCC
Q 022946 166 KDIRD-MGM-----EV-CCTLGMLEKHQAIELKKAGLTAYNHNLDTS-REFYSKIITT---RSYDERLETLKHV-REAGI 233 (289)
Q Consensus 166 ~~ik~-~~~-----~i-~~~~g~l~~e~l~~L~~aG~~~v~i~let~-~~~~~~i~~~---~~~~~~~~~i~~~-~~~Gi 233 (289)
+.+++ .|+ ++ ..|+|. .+.++.|.++|+..+.+++++. ++.++++.+. .+.++++++++.. .+.|-
T Consensus 179 ~~l~~~~Gl~~~~r~itvsT~G~--~~~i~~L~~~~l~~L~iSLha~~~e~r~~i~p~~~~~~l~~ll~al~~~~~~~~~ 256 (354)
T PRK14460 179 RTLNNEKGLNFSPRRITVSTCGI--EKGLRELGESGLAFLAVSLHAPNQELRERIMPKAARWPLDDLIAALKSYPLKTRE 256 (354)
T ss_pred HHHhhhhccCCCCCeEEEECCCC--hHHHHHHHhCCCcEEEEeCCCCCHHHHHHhcCccccCCHHHHHHHHHHHHHhcCC
Confidence 98873 354 23 456886 6678999999999999999999 9999999875 3788899888764 44555
Q ss_pred c--eeecEEeecCCCHHHHHHHHHHHhcCCCCCCeeeeccceecCCCCCC
Q 022946 234 N--VCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQ 281 (289)
Q Consensus 234 ~--v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~i~~~~p~pgTpl~ 281 (289)
. +...+|-|+.++++|+.+++++++.++ ..|.+.+|.|.+|.++.
T Consensus 257 ~v~iey~LI~GvNDs~ed~~~l~~~l~~~~---~~VnLIpyn~~~g~~y~ 303 (354)
T PRK14460 257 RVTFEYLLLGGVNDSLEHARELVRLLSRTK---CKLNLIVYNPAEGLPYS 303 (354)
T ss_pred eEEEEEEEECCCCCCHHHHHHHHHHHhcCC---CcEEEEcCCCCCCCCCC
Confidence 4 445666688999999999999999883 47899999999998874
No 109
>PRK13745 anaerobic sulfatase-maturase; Provisional
Probab=99.62 E-value=5.2e-14 Score=128.90 Aligned_cols=182 Identities=10% Similarity=0.173 Sum_probs=125.5
Q ss_pred eEeeccccCCCCcCCCCCCCCCCCCCC-CCCcCCCCHHHHHHHHHHHHH-cCCcEEE--EecccCCCCCCchhHHHHHHH
Q 022946 89 CTLLSIKTGGCSEDCSYCPQSSRYDTG-VKGQKLMTKDAVMQAAQKAKE-AGSTRFC--MGAAWRDTIGRKTNFNQILEY 164 (289)
Q Consensus 89 ~~~i~~~t~~C~~~C~fC~~~~~~~~~-~~~~~~~~~eei~~~~~~~~~-~g~~~i~--i~~~~~~~~ge~~~~~~l~e~ 164 (289)
...+...+..||++|.||+........ ......|+.+++.+.++++.+ .+...+. ++|| +++......+..++++
T Consensus 14 ~~~~kp~~~~CNl~C~yC~~~~~~~~~~~~~~~~ms~e~~~~~i~~~~~~~~~~~v~i~f~GG-EPlL~~~~~~~~~~~~ 92 (412)
T PRK13745 14 YIMLKPVGAVCNLACDYCYYLEKSKLYQENPKHVMSDELLEKFIKEYINSQTMPQVLFTWHGG-ETLMRPLSFYKKALEL 92 (412)
T ss_pred EEEEeecCCCcCCCCcccCCcCCCcccccCccCCCCHHHHHHHHHHHHHcCCCCeEEEEEEcc-ccCCCcHHHHHHHHHH
Confidence 334555246999999999975321100 012234899999999888775 3555544 4542 2222211234445555
Q ss_pred HHHHH-hcCceE-EEeCCC-CCHHHHHHHHHcCCCeEecCCCchHHHHhccCC----CCCHHHHHHHHHHHHHcCCceee
Q 022946 165 VKDIR-DMGMEV-CCTLGM-LEKHQAIELKKAGLTAYNHNLDTSREFYSKIIT----TRSYDERLETLKHVREAGINVCS 237 (289)
Q Consensus 165 i~~ik-~~~~~i-~~~~g~-l~~e~l~~L~~aG~~~v~i~let~~~~~~~i~~----~~~~~~~~~~i~~~~~~Gi~v~~ 237 (289)
++... ..++.+ ..|||+ ++++.++.|++.|+ .|.+|+|+.+++++..++ ..+|+.++++|+.+++.|+.+++
T Consensus 93 ~~~~~~~~~i~~~i~TNG~ll~~e~~~~l~~~~~-~v~ISlDG~~~~hD~~R~~~~g~gsf~~v~~~i~~l~~~gi~~~i 171 (412)
T PRK13745 93 QKKYARGRQIDNCIQTNGTLLTDEWCEFFRENNF-LVGVSIDGPQEFHDEYRKNKMGKPSFVKVMKGINLLKKHGVEWNA 171 (412)
T ss_pred HHHHcCCCceEEEEeecCEeCCHHHHHHHHHcCe-EEEEEecCCHHHhhhhcCCCCCCccHHHHHHHHHHHHHcCCCEEE
Confidence 54332 345553 356775 78999999999997 999999999777777663 35899999999999999998766
Q ss_pred cEEeecCCCHHHHHHHHHHHhcCCCCCCeeeeccceec
Q 022946 238 GGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLAV 275 (289)
Q Consensus 238 ~~i~Glget~ed~~~~l~~l~~l~~~~~~v~i~~~~p~ 275 (289)
..++. .++.+++.+.++++.++ +...+.+.+++|.
T Consensus 172 ~~vv~-~~n~~~~~e~~~~~~~l--g~~~~~~~p~~~~ 206 (412)
T PRK13745 172 MAVVN-DFNADYPLDFYHFFKEL--DCHYIQFAPIVER 206 (412)
T ss_pred EEEEc-CCccccHHHHHHHHHHc--CCCeEEEEeccCc
Confidence 54443 66777888999999999 6888988888873
No 110
>PRK14468 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=99.61 E-value=1.8e-13 Score=121.51 Aligned_cols=173 Identities=18% Similarity=0.299 Sum_probs=128.3
Q ss_pred eccccCCCCcCCCCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHHc-C-----CcEEEEecccCCCCCCc-hhHHHHHHH
Q 022946 92 LSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEA-G-----STRFCMGAAWRDTIGRK-TNFNQILEY 164 (289)
Q Consensus 92 i~~~t~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~~-g-----~~~i~i~~~~~~~~ge~-~~~~~l~e~ 164 (289)
|+. +.||+.+|.||..... + ..+.++.+||++.+...... | ++.|+|.| .||| .+++.+.+.
T Consensus 97 vSs-q~GC~l~C~fC~tg~~---g--~~r~Lt~~EI~~qv~~~~~~~g~~~~~i~~Vvf~G-----mGEPlln~~~v~~~ 165 (343)
T PRK14468 97 VST-MVGCPAGCAFCATGAM---G--FGRNLTAAEILDQVLAVAGHEGISPREIRNVVLMG-----MGEPLLNYENVLKA 165 (343)
T ss_pred EEe-cCCCCCcCCCCCCCCC---C--CCCCCCHHHHHHHHHHHHhhcCcCcCCccEEEEec-----cCccccCHHHHHHH
Confidence 444 7899999999986531 1 23458999999988655432 2 56788887 3566 356888888
Q ss_pred HHHHH-hcCc-----eE-EEeCCCCCHHHHHHHHHcCCC-eEecCCCch-HHHHhccCC---CCCHHHHHHHHHHH-HHc
Q 022946 165 VKDIR-DMGM-----EV-CCTLGMLEKHQAIELKKAGLT-AYNHNLDTS-REFYSKIIT---TRSYDERLETLKHV-REA 231 (289)
Q Consensus 165 i~~ik-~~~~-----~i-~~~~g~l~~e~l~~L~~aG~~-~v~i~let~-~~~~~~i~~---~~~~~~~~~~i~~~-~~~ 231 (289)
++.+. ..++ .+ ..|+|. .+.+++|.+.+++ .+.+|+++. ++.++++.+ ..++++++++++.. ++.
T Consensus 166 i~~l~~~~g~~l~~r~itvST~G~--~~~i~~L~~~~l~~~LaiSL~a~d~e~r~~i~p~~~~~~l~~ll~~l~~~~~~~ 243 (343)
T PRK14468 166 ARIMLHPQALAMSPRRVTLSTVGI--PKGIRRLAEEDLGVRLALSLHAPDEETRQRIIPTAHRYSIAEIMAAVRHYQAVT 243 (343)
T ss_pred HHHhcccccccccCceEEEECCCC--hHHHHHHHHhCcCcEEEEEcCCCCHHHHHHhccccccCCHHHHHHHHHHHHHhc
Confidence 88774 3333 23 456784 4678889998887 689999999 999999985 34789999999854 445
Q ss_pred CCcee--ecEEeecCCCHHHHHHHHHHHhcCCCCCCeeeeccceecCCCCC
Q 022946 232 GINVC--SGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPL 280 (289)
Q Consensus 232 Gi~v~--~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~i~~~~p~pgTpl 280 (289)
+..+. ..+|-|+.++.+|+..+.++++.+ ...|.+.+|.|.++..+
T Consensus 244 ~~~V~ieyvLI~GvNDs~e~~~~L~~ll~~~---~~~VnLIPynp~~~~~~ 291 (343)
T PRK14468 244 GRRVTLEYTMLKGVNDHLWQAELLADLLRGL---VSHVNLIPFNPWEGSPF 291 (343)
T ss_pred CCeEEEEEEEeCCCcCCHHHHHHHHHHHhcC---CcEEEEEcCCCCCCCCC
Confidence 65554 555668899999999999999988 35788888888776544
No 111
>COG0731 Fe-S oxidoreductases [Energy production and conversion]
Probab=99.59 E-value=4.8e-14 Score=120.51 Aligned_cols=169 Identities=18% Similarity=0.304 Sum_probs=134.8
Q ss_pred CCCcCCCCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHHc------CCcEEEEecccCCCCCCchhHHHHHHHHHHHHhc
Q 022946 98 GCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEA------GSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDM 171 (289)
Q Consensus 98 ~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~~------g~~~i~i~~~~~~~~ge~~~~~~l~e~i~~ik~~ 171 (289)
.|+++|.||...........+..+...+.|.+..+.+..+ .+++++|++ .|||+.+.++-++++.+++.
T Consensus 33 ~Cs~~CvyC~~G~~~~~~~~~~efi~~~~I~~~~~~~~~~~g~ea~~pd~vtis~-----~GEPTLy~~L~elI~~~k~~ 107 (296)
T COG0731 33 WCSYNCVYCWRGRTKKGTPERPEFIVEESILEELKLLLGYKGDEATEPDHVTISL-----SGEPTLYPNLGELIEEIKKR 107 (296)
T ss_pred hhcCCCeEEecccCCCCCCCCCceecHHHHHHHHHHHhcccccccCCCCEEEEeC-----CCCcccccCHHHHHHHHHhc
Confidence 7999999998743222222345557889999999887765 578888887 47898999999999999988
Q ss_pred C-ce-EEEeCCCCCHHHHHHHHHcCCCeEecCCCch-HHHHhccCCCC---CHHHHHHHHHHHHHc--CCc-eeecEEee
Q 022946 172 G-ME-VCCTLGMLEKHQAIELKKAGLTAYNHNLDTS-REFYSKIITTR---SYDERLETLKHVREA--GIN-VCSGGIIG 242 (289)
Q Consensus 172 ~-~~-i~~~~g~l~~e~l~~L~~aG~~~v~i~let~-~~~~~~i~~~~---~~~~~~~~i~~~~~~--Gi~-v~~~~i~G 242 (289)
+ +. +.+|||.+ +++++.|. -.|.+++++++. ++.|+++++++ +++.+++.++.+++. |-- +.++++=|
T Consensus 108 g~~~tflvTNgsl-pdv~~~L~--~~dql~~sLdA~~~~~~~~InRP~~~~~~e~ile~L~~~~~~~~~~~vir~tlvkg 184 (296)
T COG0731 108 GKKTTFLVTNGSL-PDVLEELK--LPDQLYVSLDAPDEKTFRRINRPHKKDSWEKILEGLEIFRSEYKGRTVIRTTLVKG 184 (296)
T ss_pred CCceEEEEeCCCh-HHHHHHhc--cCCEEEEEeccCCHHHHHHhcCCCCcchHHHHHHHHHHhhhcCCCcEEEEEEEecc
Confidence 7 44 56889988 88888888 379999999999 99999999864 699999999999996 332 44556667
Q ss_pred cCCCHHHHHHHHHHHhcCCCCCCeeeeccceecC
Q 022946 243 LGEAEEDRVGLLHTLATLPTHPESVPINALLAVK 276 (289)
Q Consensus 243 lget~ed~~~~l~~l~~l~~~~~~v~i~~~~p~p 276 (289)
+..+.+++.+..+++... .|+.|.+..++-.|
T Consensus 185 ~N~~~e~~~~~a~ll~~~--~Pd~velk~~~rpg 216 (296)
T COG0731 185 INDDEEELEEYAELLERI--NPDFVELKTYMRPG 216 (296)
T ss_pred ccCChHHHHHHHHHHHhc--CCCeEEEecCccCC
Confidence 788888899999999988 68999988876433
No 112
>PRK14469 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=99.59 E-value=2.1e-13 Score=121.67 Aligned_cols=170 Identities=18% Similarity=0.306 Sum_probs=126.6
Q ss_pred eccccCCCCcCCCCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHH---cCCcEEEEecccCCCCCCchh-HHHHHHHHHH
Q 022946 92 LSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKE---AGSTRFCMGAAWRDTIGRKTN-FNQILEYVKD 167 (289)
Q Consensus 92 i~~~t~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~---~g~~~i~i~~~~~~~~ge~~~-~~~l~e~i~~ 167 (289)
|+. +.||+.+|.||..... +. .+.++.+||++.+..+.. .++..|+|.| .|||+. ++.+.++++.
T Consensus 105 iss-q~GC~l~C~fC~tg~~---g~--~r~lt~~EI~~qv~~~~~~~~~~v~~Vvf~G-----mGEPLln~d~v~~~i~~ 173 (343)
T PRK14469 105 IST-QVGCPVKCIFCATGQS---GF--VRNLTTGEIVSQILAMEKEEKKKVGNVVYMG-----MGEPLLNYENVIKSIKI 173 (343)
T ss_pred EEe-cCCCCCcCcCCCCCCC---Cc--cccCCHHHHHHHHHHHHHhccCCcCeEEEEc-----cChhhhhHHHHHHHHHH
Confidence 454 7899999999986531 11 234789999998865432 3578898887 367754 5678888888
Q ss_pred HHh-----cCc-eE-EEeCCCCCHHHHHHHHHcCCC-eEecCCCch-HHHHhccCC---CCCHHHHHHHHHHHHH-cCCc
Q 022946 168 IRD-----MGM-EV-CCTLGMLEKHQAIELKKAGLT-AYNHNLDTS-REFYSKIIT---TRSYDERLETLKHVRE-AGIN 234 (289)
Q Consensus 168 ik~-----~~~-~i-~~~~g~l~~e~l~~L~~aG~~-~v~i~let~-~~~~~~i~~---~~~~~~~~~~i~~~~~-~Gi~ 234 (289)
++. .+. .+ .+|+|. .+.++.|.+.|++ .+.+|+++. ++.++++.+ ..++++++++++.+.+ .+..
T Consensus 174 l~~~~~~~~g~~~itisTnG~--~~~i~~L~~~~l~~~LaiSL~a~~~e~r~~i~p~~~~~~l~~Il~~l~~~~~~~~~~ 251 (343)
T PRK14469 174 LNHKKMKNIGIRRITISTVGI--PEKIIQLAEEGLDVKLALSLHAPTNFKRDQIVPLNKKYSIEEIINAVKIYQKKTGNR 251 (343)
T ss_pred HhchhcccCCCCeEEEECCCC--hHHHHHHHhhCCCcEEEEEeCCCCHHHHHhhcCcCCCCCHHHHHHHHHHHHHHhCCe
Confidence 752 233 33 356785 6778999999998 799999999 999998765 4689999999997655 4555
Q ss_pred ee--ecEEeecCCCHHHHHHHHHHHhcCCCCCCeeeeccceecCC
Q 022946 235 VC--SGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLAVKG 277 (289)
Q Consensus 235 v~--~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~i~~~~p~pg 277 (289)
+. ..+|-|+.++.+|+.++.++++.++ ..|.+.+|.|.++
T Consensus 252 v~i~yvlI~g~NDs~ed~~~La~llk~~~---~~VnLIpynp~~~ 293 (343)
T PRK14469 252 VTIEYILIKGFNDEIEDAKKLAELLKGLK---VFVNLIPVNPTVP 293 (343)
T ss_pred EEEEEEEECCCCCCHHHHHHHHHHHhccC---cEEEEEecCCCCc
Confidence 44 4566688899999999999999883 4677878877655
No 113
>PRK14455 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=99.59 E-value=2.5e-13 Score=121.28 Aligned_cols=175 Identities=15% Similarity=0.303 Sum_probs=130.9
Q ss_pred eccccCCCCcCCCCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHH------cCCcEEEEecccCCCCCCch-hHHHHHHH
Q 022946 92 LSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKE------AGSTRFCMGAAWRDTIGRKT-NFNQILEY 164 (289)
Q Consensus 92 i~~~t~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~------~g~~~i~i~~~~~~~~ge~~-~~~~l~e~ 164 (289)
|+. ..||+.+|.||..... + ..+.++++||++.+..... .|++.|++.| .|||. +++.+.++
T Consensus 113 iSs-qvGC~~~C~FC~t~~~---~--~~r~lt~~EIv~qv~~~~~~~~~~g~~v~~Vv~~G-----mGEPLln~~~v~~~ 181 (356)
T PRK14455 113 VTT-QVGCRIGCTFCASTLG---G--LKRDLEAGEIVAQVMLVQKYLDETEERVSHIVVMG-----IGEPFDNYDNVMDF 181 (356)
T ss_pred EEC-CCCCCCCCCcCCCCCC---C--CCccCCHHHHHHHHHHHHHHHhhcCCCcceEEEec-----cccccCCHHHHHHH
Confidence 444 6799999999987632 1 2445899999998875432 3577888877 36775 47999999
Q ss_pred HHHHHh-cCc-----eE-EEeCCCCCHHHHHHHHHcCCC-eEecCCCch-HHHHhccCC---CCCHHHHHHHHHHHHH-c
Q 022946 165 VKDIRD-MGM-----EV-CCTLGMLEKHQAIELKKAGLT-AYNHNLDTS-REFYSKIIT---TRSYDERLETLKHVRE-A 231 (289)
Q Consensus 165 i~~ik~-~~~-----~i-~~~~g~l~~e~l~~L~~aG~~-~v~i~let~-~~~~~~i~~---~~~~~~~~~~i~~~~~-~ 231 (289)
++.+++ .|+ .+ ..|+|.. ..+..+.+.++. .+.+++++. ++.++++.+ ..+.++++++++.+.+ .
T Consensus 182 l~~l~~~~g~~~s~r~itvsT~G~~--~~i~~l~d~~l~~~LaiSL~a~~~e~r~~l~pi~~~~~l~~Il~~l~~~~~~~ 259 (356)
T PRK14455 182 LRIINDDKGLAIGARHITVSTSGIA--PKIYDFADEGLQINLAISLHAPNNELRSSLMPINRAYPLEKLMEAIEYYIEKT 259 (356)
T ss_pred HHHHhcccCcccCCCceEEEecCch--HhHHHHHhcccCeeEEeccCCCCHHHHHHhcCcccCCCHHHHHHHHHHHHHhc
Confidence 999984 455 33 4567865 346667776654 356899999 999998765 4578999999998765 5
Q ss_pred CCcee--ecEEeecCCCHHHHHHHHHHHhcCCCCCCeeeeccceecCCCCCCC
Q 022946 232 GINVC--SGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQD 282 (289)
Q Consensus 232 Gi~v~--~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~i~~~~p~pgTpl~~ 282 (289)
|..+. ..+|-|+.++.+|+.++.++++.+ ...|.+.+|.|.++.++..
T Consensus 260 ~~~v~iey~lI~gvNDs~ed~~~La~ll~~l---~~~VnLIPynp~~~~ky~~ 309 (356)
T PRK14455 260 NRRVTFEYILLGGVNDQVEHAEELADLLKGI---KCHVNLIPVNPVPERDYVR 309 (356)
T ss_pred CCeEEEEEEEeCCCCCCHHHHHHHHHHHhcC---CCcEEEEecCcCCCCCCcC
Confidence 55554 455667899999999999999988 3678899999998876644
No 114
>TIGR00048 radical SAM enzyme, Cfr family. A Staphylococcus sciuri plasmid-borne member of this family, Cfr, has been identified as essential to transferrable resistance to chloramphenicol and florfenicol by an unknown mechanism. A 14-15 residue cluster with four perfectly conserved Cys residues suggests this protein may be an enzyme with an iron-sulfur cluster. The Cys cluster is part of the radical SAM domain, suggested to provide a general mechanism by which the Fe-S center cleaves S-adenosylmethionine to initiate radical-based catalysis. Members of this family lack apparent transmembrane domains.
Probab=99.59 E-value=2.7e-13 Score=120.99 Aligned_cols=171 Identities=15% Similarity=0.277 Sum_probs=127.6
Q ss_pred cCCCCcCCCCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHH------cCCcEEEEecccCCCCCCch-hHHHHHHHHHHH
Q 022946 96 TGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKE------AGSTRFCMGAAWRDTIGRKT-NFNQILEYVKDI 168 (289)
Q Consensus 96 t~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~------~g~~~i~i~~~~~~~~ge~~-~~~~l~e~i~~i 168 (289)
..||+++|.||+.... + ..+.++.+||++.+..+.. .+++.|+|.| .|||. +++.+.++++.+
T Consensus 112 Q~GC~l~C~fC~t~~~---g--~~r~lt~~Eiv~qv~~~~~~~~~~~~~v~nVvfmG-----mGEPLln~d~v~~~l~~l 181 (355)
T TIGR00048 112 QVGCALGCTFCATAKG---G--FNRNLEASEIIGQVLRVQKINNETGERVSNVVFMG-----MGEPLLNLNEVVKAMEIM 181 (355)
T ss_pred CCCCCCcCCCCCCCCC---C--CCCCCCHHHHHHHHHHHHHHhhhcCCCeeEEEEec-----CCchhhCHHHHHHHHHHh
Confidence 6789999999987531 1 2244799999987755432 2467788877 36774 557888888887
Q ss_pred Hh-cC--c---eE-EEeCCCCCHHHHHHHHHcCCC-eEecCCCch-HHHHhccCC---CCCHHHHHHHHHH-HHHcCCce
Q 022946 169 RD-MG--M---EV-CCTLGMLEKHQAIELKKAGLT-AYNHNLDTS-REFYSKIIT---TRSYDERLETLKH-VREAGINV 235 (289)
Q Consensus 169 k~-~~--~---~i-~~~~g~l~~e~l~~L~~aG~~-~v~i~let~-~~~~~~i~~---~~~~~~~~~~i~~-~~~~Gi~v 235 (289)
++ .+ + .+ ..|+|.+ +.+++|.+.+++ .+.+++++. ++.++++.+ ..++++++++++. +++.|.++
T Consensus 182 ~~~~g~~i~~~~itisT~G~~--~~i~~l~~~~l~~~LaiSL~a~~~e~r~~l~p~~~~~~l~~ll~~l~~~~~~~g~~V 259 (355)
T TIGR00048 182 NDDFGLGISKRRITISTSGVV--PKIDILADKMLQVALAISLHAPNDELRSSLMPINKKYNIETLLAAVRRYLNKTGRRV 259 (355)
T ss_pred hcccccCcCCCeEEEECCCch--HHHHHHHHhCCCcEEEEEeCCCCHHHHHHhcCcccCCCHHHHHHHHHHHHHHhCCEE
Confidence 63 33 4 33 4568865 568888887887 578999999 999999876 3468999988876 56678765
Q ss_pred e--ecEEeecCCCHHHHHHHHHHHhcCCCCCCeeeeccceecCCCCCC
Q 022946 236 C--SGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQ 281 (289)
Q Consensus 236 ~--~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~i~~~~p~pgTpl~ 281 (289)
+ ..+|-|+.++.+++..+.++++.++ ..|.+.+|.|+++.++.
T Consensus 260 tieyvLI~GvNDs~e~a~~La~llk~l~---~~VnLIPynp~~~~~~~ 304 (355)
T TIGR00048 260 TFEYVLLDGVNDQVEHAEELAELLKGTK---CKVNLIPWNPFPEADYE 304 (355)
T ss_pred EEEEEEECCCCCCHHHHHHHHHHHhcCC---CceEEEecccCCCCCCC
Confidence 5 4556688999999999999999883 57888888888877663
No 115
>PRK13758 anaerobic sulfatase-maturase; Provisional
Probab=99.58 E-value=1.6e-13 Score=124.32 Aligned_cols=166 Identities=13% Similarity=0.184 Sum_probs=117.5
Q ss_pred cCCCCcCCCCCCCCCCCCCC-CCCcCCCCHHHHHHHHHHHHHc--CCcEEEEecccCCCCCCchhH--HHHHHHHHHHHh
Q 022946 96 TGGCSEDCSYCPQSSRYDTG-VKGQKLMTKDAVMQAAQKAKEA--GSTRFCMGAAWRDTIGRKTNF--NQILEYVKDIRD 170 (289)
Q Consensus 96 t~~C~~~C~fC~~~~~~~~~-~~~~~~~~~eei~~~~~~~~~~--g~~~i~i~~~~~~~~ge~~~~--~~l~e~i~~ik~ 170 (289)
|..||++|.||......... ......|+.+.+.+.++.+.+. +...|.|.| |||+.. +.+.++++.+++
T Consensus 12 t~~CNl~C~yC~~~~~~~~~~~~~~~~m~~~~~~~~i~~~~~~~~~~~~i~~~G------GEPll~~~~~~~~~~~~~~~ 85 (370)
T PRK13758 12 SSGCNLKCTYCFYHSLSDNRNVKSYGIMRDEVLESMVKRVLNEAEGHCSFAFQG------GEPTLAGLEFFEELMELQRK 85 (370)
T ss_pred CCCcCCCCcccCCcCccccccccccCCCCHHHHHHHHHHHHhccCCceEEEEEC------CccccCChHHHHHHHHHHHH
Confidence 58999999999876322111 1122348888888877766554 334566665 566443 344566665554
Q ss_pred cC---ce---EEEeCCC-CCHHHHHHHHHcCCCeEecCCCchHHHHhccCC----CCCHHHHHHHHHHHHHcCCceeecE
Q 022946 171 MG---ME---VCCTLGM-LEKHQAIELKKAGLTAYNHNLDTSREFYSKIIT----TRSYDERLETLKHVREAGINVCSGG 239 (289)
Q Consensus 171 ~~---~~---i~~~~g~-l~~e~l~~L~~aG~~~v~i~let~~~~~~~i~~----~~~~~~~~~~i~~~~~~Gi~v~~~~ 239 (289)
.+ +. ..+|||+ ++++.++.|++.|+ .|.+|+|+.++.++..++ ..+|+.++++|+.+++.|+.+...+
T Consensus 86 ~~~~~~~~~~~i~TNG~ll~~~~~~~l~~~~~-~v~iSlDg~~~~hd~~R~~~~g~~~f~~v~~~i~~l~~~~~~~~i~~ 164 (370)
T PRK13758 86 HNYKNLKIYNSLQTNGTLIDESWAKFLSENKF-LVGLSMDGPKEIHNLNRKDCCGLDTFSKVERAAELFKKYKVEFNILC 164 (370)
T ss_pred hccCCCeEEEEEEecCEecCHHHHHHHHHcCc-eEEEeecCCHHHhccccCCCCCCccHHHHHHHHHHHHHhCCCceEEE
Confidence 33 32 2467885 78899999999987 899999999777887763 4689999999999999998877666
Q ss_pred EeecCCCHHHHHHHHHHHhcCCCCCCeeeecc
Q 022946 240 IIGLGEAEEDRVGLLHTLATLPTHPESVPINA 271 (289)
Q Consensus 240 i~Glget~ed~~~~l~~l~~l~~~~~~v~i~~ 271 (289)
++. ..+.+++.++++++.++ +...+.+..
T Consensus 165 ~v~-~~n~~~l~~i~~~~~~~--g~~~~~~~~ 193 (370)
T PRK13758 165 VVT-SNTARHVNKIYKYFKEK--DFKFLQFIN 193 (370)
T ss_pred Eec-cccccCHHHHHHHHHHc--CCCeEeeee
Confidence 665 45677888899999888 566666543
No 116
>PRK14470 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=99.58 E-value=5.1e-13 Score=118.09 Aligned_cols=170 Identities=18% Similarity=0.240 Sum_probs=127.5
Q ss_pred eccccCCCCcCCCCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHH---cCCcEEEEecccCCCCCCchh-HHHHHHHHHH
Q 022946 92 LSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKE---AGSTRFCMGAAWRDTIGRKTN-FNQILEYVKD 167 (289)
Q Consensus 92 i~~~t~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~---~g~~~i~i~~~~~~~~ge~~~-~~~l~e~i~~ 167 (289)
|+. +.||+++|.||..... +.. +.++.+||++.+..... ..++.|+|.| .|||+. ++.+.++++.
T Consensus 101 vSs-q~GC~l~C~fC~tg~~---g~~--r~l~~~EI~~qi~~~~~~~~~~i~nIvfmG-----mGEPllN~d~v~~~i~~ 169 (336)
T PRK14470 101 LSS-QAGCALGCAFCATGKL---GLD--RSLRSWEIVAQLLAVRADSERPITGVVFMG-----QGEPFLNYDEVLRAAYA 169 (336)
T ss_pred EeC-CCCcCCCCccccCCCC---CCC--CCCCHHHHHHHHHHHHHhcCCCCCEEEEEe-----cCccccCHHHHHHHHHH
Confidence 444 7899999999988642 222 33588888888765543 2578899987 477854 6889999888
Q ss_pred HHh-c-----CceE-EEeCCCCCHHHHHHHHHcCC-CeEecCCCch-HHHHhccCCC---CCHHHHHHHHHHHHHcCCce
Q 022946 168 IRD-M-----GMEV-CCTLGMLEKHQAIELKKAGL-TAYNHNLDTS-REFYSKIITT---RSYDERLETLKHVREAGINV 235 (289)
Q Consensus 168 ik~-~-----~~~i-~~~~g~l~~e~l~~L~~aG~-~~v~i~let~-~~~~~~i~~~---~~~~~~~~~i~~~~~~Gi~v 235 (289)
++. . +..+ ..|+|.. ..+.+|.+.|. +.+.+|+++. ++.++++.+. .++++++++++.+.+.|-.+
T Consensus 170 l~~~~~~~~~~~~ItVsTnG~~--p~i~~l~~~~~~~~LaiSLhA~~~e~r~~I~p~~~~~~le~il~ai~~~~~~~rri 247 (336)
T PRK14470 170 LCDPAGARIDGRRISISTAGVV--PMIRRYTAEGHKFRLCISLNAAIPWKRRALMPIEQGFPLDELVEAIREHAALRGRV 247 (336)
T ss_pred HhCccccccCCCceEEEecCCh--HHHHHHHhcCCCceEEEecCCCCHHHHHHhcCccccCCHHHHHHHHHHHHHhCCCe
Confidence 873 1 2233 3568864 35666666665 7899999999 9999999874 57999999999988877654
Q ss_pred --eecEEeecCCCHHHHHHHHHHHhcCCCCCCeeeeccceecCC
Q 022946 236 --CSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLAVKG 277 (289)
Q Consensus 236 --~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~i~~~~p~pg 277 (289)
...+|-|+.++++|+.++.++++.+ ...+.+.+|+|.++
T Consensus 248 ~ieyvLI~GvNDseeda~~La~llk~l---~~~vnlI~~N~~~~ 288 (336)
T PRK14470 248 TLEYVMISGVNVGEEDAAALGRLLAGI---PVRLNPIAVNDATG 288 (336)
T ss_pred EEEEEEEecccCCHHHHHHHHHHHhcC---CCeEEEeccCCCCC
Confidence 4456678899999999999999987 35778888888665
No 117
>COG1180 PflA Pyruvate-formate lyase-activating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=99.57 E-value=3e-13 Score=115.83 Aligned_cols=168 Identities=20% Similarity=0.284 Sum_probs=126.5
Q ss_pred cCCCCcCCCCCCCCCCCCC-CCCCcCCCCHHHHHHHHHHHHHcCCcEEEEecccCCCCCCc-hhHHHHHHHHHHHHhcCc
Q 022946 96 TGGCSEDCSYCPQSSRYDT-GVKGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRK-TNFNQILEYVKDIRDMGM 173 (289)
Q Consensus 96 t~~C~~~C~fC~~~~~~~~-~~~~~~~~~~eei~~~~~~~~~~g~~~i~i~~~~~~~~ge~-~~~~~l~e~i~~ik~~~~ 173 (289)
+.|||++|.||..+..... .......++++++.+.. ....+...|+++| ||| ...+.+.++++.+|+.|+
T Consensus 42 ~~GCnlrC~~C~N~~~~~~~~~~~~~~~~~e~l~~~~--~~~~~~~gvt~SG------GEP~~q~e~~~~~~~~ake~Gl 113 (260)
T COG1180 42 LQGCNLRCPYCQNPEISQRGREVSGEEVSPEVLVDKA--FYSESGGGVTFSG------GEPTLQAEFALDLLRAAKERGL 113 (260)
T ss_pred eCCCCCCCCCCCChhHhcccccCchhhcCHHHHHHHh--hhcCCCCEEEEEC------CcchhhHHHHHHHHHHHHHCCC
Confidence 7899999999987754321 11112223434433331 1223667788876 567 577999999999998898
Q ss_pred eE-EEeCCCCCHHHHHHHHHcCCCeEecCCCch-HHHHhccCCCCCHHHHHHHHHHHHHcCCcee--ecEEeecCCCHHH
Q 022946 174 EV-CCTLGMLEKHQAIELKKAGLTAYNHNLDTS-REFYSKIITTRSYDERLETLKHVREAGINVC--SGGIIGLGEAEED 249 (289)
Q Consensus 174 ~i-~~~~g~l~~e~l~~L~~aG~~~v~i~let~-~~~~~~i~~~~~~~~~~~~i~~~~~~Gi~v~--~~~i~Glget~ed 249 (289)
.+ ..|||.++++.+++|.+. +|.+.+.+.+. ++.|+++..... +.++++++.+.+.|+.+. ..++-|+.++.++
T Consensus 114 ~~~l~TnG~~~~~~~~~l~~~-~D~v~~DlK~~~~~~y~~~tg~~~-~~vl~~~~~l~~~g~~ve~r~lviPg~~d~~e~ 191 (260)
T COG1180 114 HVALDTNGFLPPEALEELLPL-LDAVLLDLKAFDDELYRKLTGADN-EPVLENLELLADLGVHVEIRTLVIPGYNDDEEE 191 (260)
T ss_pred cEEEEcCCCCCHHHHHHHHhh-cCeEEEeeccCChHHHHHHhCCCc-HHHHHHHHHHHcCCCeEEEEEEEECCCCCCHHH
Confidence 85 568999999999999998 99999999999 888999886555 999999999999998754 4556677789999
Q ss_pred HHHHHHHHhcCCCCCCeeeecccee
Q 022946 250 RVGLLHTLATLPTHPESVPINALLA 274 (289)
Q Consensus 250 ~~~~l~~l~~l~~~~~~v~i~~~~p 274 (289)
+.+.++++.++. ....+.+.+|.|
T Consensus 192 i~~i~~~i~~~~-~~~p~~~l~fhp 215 (260)
T COG1180 192 IRELAEFIADLG-PEIPIHLLRFHP 215 (260)
T ss_pred HHHHHHHHHhcC-CcccEEEecccc
Confidence 999999999864 345566666655
No 118
>KOG2672 consensus Lipoate synthase [Coenzyme transport and metabolism]
Probab=99.57 E-value=3.8e-14 Score=117.47 Aligned_cols=176 Identities=20% Similarity=0.343 Sum_probs=133.3
Q ss_pred EeeccccCCCCcCCCCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHHcCCcEEEEecccCCCCCCchhHHHHHHHHHHHH
Q 022946 90 TLLSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIR 169 (289)
Q Consensus 90 ~~i~~~t~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~~g~~~i~i~~~~~~~~ge~~~~~~l~e~i~~ik 169 (289)
+++- ++.-|...|+||++....+ +.+ +++.|-.+.++.+.+.|+..|++++.+++... +..-..+.+.++.+|
T Consensus 113 TIMl-mGDTCTRGCRFCsVKTsR~----PpP-lDp~EPeNTAeAIasWgl~YiVlTSVDRDDlp-DgGa~HiAkTVq~iK 185 (360)
T KOG2672|consen 113 TIML-MGDTCTRGCRFCSVKTSRN----PPP-LDPNEPENTAEAIASWGLDYIVLTSVDRDDLP-DGGANHIAKTVQKIK 185 (360)
T ss_pred EEEe-ecCccccCcceeeeecCCC----CcC-CCCCCcccHHHHHHHcCCCeEEEEecccccCc-CcchHHHHHHHHHHH
Confidence 3343 4889999999999864322 222 44555556666777899999999888776542 234467888888888
Q ss_pred hcCceE----EEeCCCCCHHHHHHHHHcCCCeEecCCCchHHHHhccCC-CCCHHHHHHHHHHHHHc--CCceeecEEee
Q 022946 170 DMGMEV----CCTLGMLEKHQAIELKKAGLTAYNHNLDTSREFYSKIIT-TRSYDERLETLKHVREA--GINVCSGGIIG 242 (289)
Q Consensus 170 ~~~~~i----~~~~g~l~~e~l~~L~~aG~~~v~i~let~~~~~~~i~~-~~~~~~~~~~i~~~~~~--Gi~v~~~~i~G 242 (289)
....++ .+....-+-+.++.+...|+|.+.+++||.+++-..++- ..+|.+-+.+++.+++. ++-..+.+|+|
T Consensus 186 ~k~p~ilvE~L~pDF~Gd~~~Ve~va~SGLDV~AHNvETVe~Ltp~VRD~RA~yrQSL~VLk~aK~~~P~litktsiMlg 265 (360)
T KOG2672|consen 186 EKAPEILVECLTPDFRGDLKAVEKVAKSGLDVYAHNVETVEELTPFVRDPRANYRQSLSVLKHAKEVKPGLITKTSIMLG 265 (360)
T ss_pred hhCcccchhhcCccccCchHHHHHHHhcCccceecchhhHHhcchhhcCcccchHHhHHHHHHHHhhCCCceehhhhhhc
Confidence 554433 332223456788999999999999999999777766654 45899999999999995 45567889999
Q ss_pred cCCCHHHHHHHHHHHhcCCCCCCeeeecccee
Q 022946 243 LGEAEEDRVGLLHTLATLPTHPESVPINALLA 274 (289)
Q Consensus 243 lget~ed~~~~l~~l~~l~~~~~~v~i~~~~p 274 (289)
+|||+|++..+++.|+.. +++.+.+..|++
T Consensus 266 lgetdeei~~tl~dLr~~--~vdv~t~gqym~ 295 (360)
T KOG2672|consen 266 LGETDEEIKQTLKDLRAA--DVDVVTFGQYMQ 295 (360)
T ss_pred cCCCHHHHHHHHHHHHHc--CCcEEecccccC
Confidence 999999999999999999 688888888765
No 119
>PRK14463 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=99.56 E-value=5.5e-13 Score=118.66 Aligned_cols=174 Identities=18% Similarity=0.310 Sum_probs=125.1
Q ss_pred eeccccCCCCcCCCCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHH-cCCcEEEEecccCCCCCCc-hhHHHHHHHHHHH
Q 022946 91 LLSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKE-AGSTRFCMGAAWRDTIGRK-TNFNQILEYVKDI 168 (289)
Q Consensus 91 ~i~~~t~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~-~g~~~i~i~~~~~~~~ge~-~~~~~l~e~i~~i 168 (289)
.|+. +.||+.+|.||.... . + ..+.++.+||++.+..+.. .+++.|+|.|. ||| .+++.++++++.+
T Consensus 106 cvSs-q~GC~~~C~FC~tg~-~--~--~~r~lt~~EI~~qv~~~~~~~~i~~IvfmG~-----GEPl~n~~~vi~~l~~l 174 (349)
T PRK14463 106 CISS-QVGCAMGCAFCLTGT-F--R--LTRNLTTAEIVNQVCAVKRDVPVRNIVFMGM-----GEPLANLDNVIPALQIL 174 (349)
T ss_pred EEEe-cCCcCCCCccCCCCC-C--C--CCCCCCHHHHHHHHHHHHhcCCccEEEEecC-----CcchhcHHHHHHHHHHh
Confidence 4565 899999999997542 2 1 2345899999998876653 57899999873 455 3567888888887
Q ss_pred Hh-cCc-----eE-EEeCCCCCHHHHHHHHHcCCCeEecCCCch-HHHHhccCC---CCCHHHHHHHHHHHHHc-CCcee
Q 022946 169 RD-MGM-----EV-CCTLGMLEKHQAIELKKAGLTAYNHNLDTS-REFYSKIIT---TRSYDERLETLKHVREA-GINVC 236 (289)
Q Consensus 169 k~-~~~-----~i-~~~~g~l~~e~l~~L~~aG~~~v~i~let~-~~~~~~i~~---~~~~~~~~~~i~~~~~~-Gi~v~ 236 (289)
++ .++ .+ ..|+|.+ + .+.+|.+..-..+.+|+++. ++.++++.+ ..+.++++++++...+. |-.+.
T Consensus 175 ~~~~gl~~s~r~itVsTnGl~-~-~i~~l~~~~~~~LaiSL~a~~~e~r~~I~pink~~~l~~l~~a~~~~~~~~~~~v~ 252 (349)
T PRK14463 175 TDPDGLQFSTRKVTVSTSGLV-P-EMEELGREVTVNLAVSLNATTDEVRDRIMPVNRRYPLAELLAACKAFPLPGRRKIT 252 (349)
T ss_pred hcccccCcCCceEEEECCCch-H-HHHHHhhccCeEEEEeCCCCCHHHHHHhcCcccCCCHHHHHHHHHHHHHhcCCeEE
Confidence 63 454 33 3467853 3 34445444323466899999 999999855 45789999988876653 44444
Q ss_pred --ecEEeecCCCHHHHHHHHHHHhcCCCCCCeeeeccceecCCCCC
Q 022946 237 --SGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPL 280 (289)
Q Consensus 237 --~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~i~~~~p~pgTpl 280 (289)
..+|-|+.++.+++.++.++++.+ ...|.+.+|.|.+|..+
T Consensus 253 ieyvLI~GvNDs~e~~~~L~~ll~~l---~~~vnlIPyn~~~~~~~ 295 (349)
T PRK14463 253 IEYVMIRGLNDSLEDAKRLVRLLSDI---PSKVNLIPFNEHEGCDF 295 (349)
T ss_pred EEEEEeCCCCCCHHHHHHHHHHHhcc---CceEEEEecCCCCCCCC
Confidence 456667899999999999999998 34788888888877543
No 120
>PRK14466 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=99.56 E-value=6.3e-13 Score=117.06 Aligned_cols=172 Identities=17% Similarity=0.262 Sum_probs=125.4
Q ss_pred cCCCCcCCCCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHH-cCCcEEEEecccCCCCCCch-hHHHHHHHHHHHH-hcC
Q 022946 96 TGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKE-AGSTRFCMGAAWRDTIGRKT-NFNQILEYVKDIR-DMG 172 (289)
Q Consensus 96 t~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~-~g~~~i~i~~~~~~~~ge~~-~~~~l~e~i~~ik-~~~ 172 (289)
+-||+++|.||..... +.. +.++.+||++.+..+.. .+++.|+|.| .|||+ +++.+++.++.++ ..+
T Consensus 110 QvGC~~~C~FC~Tg~~---g~~--rnLt~~EIl~Qv~~~~~~~~i~nIvfmG-----mGEPL~N~d~vi~al~~l~~~~g 179 (345)
T PRK14466 110 QVGCKMNCLFCMTGKQ---GFT--GNLTAAQILNQIYSLPERDKLTNLVFMG-----MGEPLDNLDEVLKALEILTAPYG 179 (345)
T ss_pred CCCCCCCCCCCCCCCC---CCC--CCCCHHHHHHHHHhhhhcCCCCeEEEee-----eCcCcccHHHHHHHHHHHhhccc
Confidence 4599999999986531 222 34899999999987753 3688999987 36674 5688888888876 334
Q ss_pred c-----eE-EEeCCCCCHHHHHHHHHcCCCeEecCCCch-HHHHhccCCC---CCHHHHHHHHHHHHH-cCCce--eecE
Q 022946 173 M-----EV-CCTLGMLEKHQAIELKKAGLTAYNHNLDTS-REFYSKIITT---RSYDERLETLKHVRE-AGINV--CSGG 239 (289)
Q Consensus 173 ~-----~i-~~~~g~l~~e~l~~L~~aG~~~v~i~let~-~~~~~~i~~~---~~~~~~~~~i~~~~~-~Gi~v--~~~~ 239 (289)
+ .+ ..|+|.. +. ++++.+..-..+.+|+.+. ++.++++.|. .+.++++++++...+ .|-.+ ...+
T Consensus 180 ~~~s~r~ItVsT~G~~-~~-i~~l~~~~~~~LavSLha~~~e~R~~i~P~~~~~~l~~l~~al~~y~~~~~rri~~Ey~L 257 (345)
T PRK14466 180 YGWSPKRITVSTVGLK-KG-LKRFLEESECHLAISLHSPFPEQRRELMPAEKAFSIKEIIDLLKNYDFSKQRRVSFEYIV 257 (345)
T ss_pred cCcCCceEEEEcCCCc-hH-HHHHhhccCcEEEEEcCCCCHHHHHHhcCCccCCCHHHHHHHHHHHHHhhCCEEEEEEEE
Confidence 3 33 3457743 22 3333332234678999999 9999999984 468999999998544 44444 4456
Q ss_pred EeecCCCHHHHHHHHHHHhcCCCCCCeeeeccceecCCCCCCC
Q 022946 240 IIGLGEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQD 282 (289)
Q Consensus 240 i~Glget~ed~~~~l~~l~~l~~~~~~v~i~~~~p~pgTpl~~ 282 (289)
|-|+.++.+|..++.++++.+ ...|++.+|+|.||.++..
T Consensus 258 i~gvND~~e~a~~L~~ll~~~---~~~VNLIp~Np~~~~~~~~ 297 (345)
T PRK14466 258 FKGLNDSLKHAKELVKLLRGI---DCRVNLIRFHAIPGVDLEG 297 (345)
T ss_pred eCCCCCCHHHHHHHHHHHcCC---CceEEEEecCCCCCCCCcC
Confidence 668899999999999999988 4789999999999975443
No 121
>COG0535 Predicted Fe-S oxidoreductases [General function prediction only]
Probab=99.55 E-value=3e-13 Score=121.12 Aligned_cols=172 Identities=21% Similarity=0.269 Sum_probs=134.0
Q ss_pred eeccccCCCCcCCCCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHHcC-CcEEEEecccCCCCCCchhHHHHHHHHHHHH
Q 022946 91 LLSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAG-STRFCMGAAWRDTIGRKTNFNQILEYVKDIR 169 (289)
Q Consensus 91 ~i~~~t~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~~g-~~~i~i~~~~~~~~ge~~~~~~l~e~i~~ik 169 (289)
.+++ |+.||.+|.||+...... ....++.++..+.+..+.+.| ...+.++| |||....++.++++.++
T Consensus 22 ~~~~-t~~Cnl~C~~C~~~~~~~----~~~el~~~~~~~~~~~~~~~g~~~~v~~~g------GEPll~~d~~ei~~~~~ 90 (347)
T COG0535 22 GIEL-TNRCNLACKHCYAEAGKK----LPGELSTEEDLRVIDELAELGEIPVVIFTG------GEPLLRPDLLEIVEYAR 90 (347)
T ss_pred EEee-ccccCCcCcccccccCCC----CccccCHHHHHHHHHHHHHcCCeeEEEEeC------CCccccccHHHHHHHHh
Confidence 3455 999999999998764221 123378888888888888888 55555554 67777789999999888
Q ss_pred hc-CceE-EEeCC-CCCHHHHHHHHHcCCCeEecCCCch-HHHHhccCC-CCCHHHHHHHHHHHHHcCCceeecEEeecC
Q 022946 170 DM-GMEV-CCTLG-MLEKHQAIELKKAGLTAYNHNLDTS-REFYSKIIT-TRSYDERLETLKHVREAGINVCSGGIIGLG 244 (289)
Q Consensus 170 ~~-~~~i-~~~~g-~l~~e~l~~L~~aG~~~v~i~let~-~~~~~~i~~-~~~~~~~~~~i~~~~~~Gi~v~~~~i~Glg 244 (289)
+. ++.+ ..|+| .++.+.++.|+++|++.|.+++|+. ++.++.++. ...++..+++++.+++.|+.+...+.+. .
T Consensus 91 ~~~~~~~~~~TnG~~~~~~~~~~l~~~g~~~v~iSid~~~~e~hd~~rg~~g~~~~~~~~i~~~~~~g~~~~~~~~v~-~ 169 (347)
T COG0535 91 KKGGIRVSLSTNGTLLTEEVLEKLKEAGLDYVSISLDGLDPETHDPIRGVKGVFKRAVEAIKNLKEAGILVVINTTVT-K 169 (347)
T ss_pred hcCCeEEEEeCCCccCCHHHHHHHHhcCCcEEEEEecCCChhhhhhhcCCCcHHHHHHHHHHHHHHcCCeeeEEEEEe-c
Confidence 54 5554 45677 4678999999999999999999999 899888877 5689999999999999999744333332 6
Q ss_pred CCHHHHHHHHHHHhcCCCCCCeeeeccceecC
Q 022946 245 EAEEDRVGLLHTLATLPTHPESVPINALLAVK 276 (289)
Q Consensus 245 et~ed~~~~l~~l~~l~~~~~~v~i~~~~p~p 276 (289)
.+.+++.+.++.+.++ +...+.+..++|..
T Consensus 170 ~n~~~l~~~~~~~~~~--g~~~~~~~~~~~~g 199 (347)
T COG0535 170 INYDELPEIADLAAEL--GVDELNVFPLIPVG 199 (347)
T ss_pred CcHHHHHHHHHHHHHc--CCCEEEEEEEeecc
Confidence 7788999999999999 46778888887754
No 122
>PRK14467 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=99.54 E-value=1.4e-12 Score=115.76 Aligned_cols=176 Identities=16% Similarity=0.322 Sum_probs=128.6
Q ss_pred eeccccCCCCcCCCCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHH----cCCcEEEEecccCCCCCCc-hhHHHHHHHH
Q 022946 91 LLSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKE----AGSTRFCMGAAWRDTIGRK-TNFNQILEYV 165 (289)
Q Consensus 91 ~i~~~t~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~----~g~~~i~i~~~~~~~~ge~-~~~~~l~e~i 165 (289)
.|+. +.||+.+|.||...+ .+ ..+.++.+||++.+..... .++..|+|.| .||| ..++.+.+++
T Consensus 102 cvSs-q~GC~l~C~FC~t~~---~G--~~rnlt~~EIv~Qv~~~~~~~~~~~v~~VvfmG-----mGEPL~N~d~v~~~l 170 (348)
T PRK14467 102 CVSS-QVGCAVGCKFCATAK---DG--LIRNLRTAEIIDQYIQVQKFLGENRIRNVVFMG-----MGEPLANYENVRKAV 170 (348)
T ss_pred EEEc-CCCCCCcCcCCCCCC---CC--CcCCCCHHHHHHHHHHHHHHhccCCCCeEEEEc-----cChhhcCHHHHHHHH
Confidence 3555 899999999998763 12 2245899999998866554 2478898887 4677 4679999999
Q ss_pred HHHHh-cCc-----eE-EEeCCCCCHHHHHHHHHc----CCCeEecCCCch-HHHHhccCCC---CCHHHHHHHHHHHH-
Q 022946 166 KDIRD-MGM-----EV-CCTLGMLEKHQAIELKKA----GLTAYNHNLDTS-REFYSKIITT---RSYDERLETLKHVR- 229 (289)
Q Consensus 166 ~~ik~-~~~-----~i-~~~~g~l~~e~l~~L~~a----G~~~v~i~let~-~~~~~~i~~~---~~~~~~~~~i~~~~- 229 (289)
+.+++ .|+ .+ ..|+|.. ..++++... .++ +.+|+.+. ++.++++.+. ...++++++++...
T Consensus 171 ~~l~~~~gl~~~~r~itvsT~G~~--~~i~~l~~~~~l~~v~-LalSLha~~~e~r~~i~p~~~~~~l~~l~~~~~~~~~ 247 (348)
T PRK14467 171 QIMTSPWGLDLSKRRITISTSGII--HQIKRMAEDPVMPEVN-LAVSLNASSQKLRERIMPISKTNTLEELMEVLKQYPL 247 (348)
T ss_pred HHHcChhccCcCCCcEEEECCCCh--hHHHHHHhhccccCee-EEEECCCCCHHHHHHhcCCccccCHHHHHHHHHHHHH
Confidence 99973 565 34 3457765 223444432 343 45899999 9999999984 36788888887643
Q ss_pred HcCCcee--ecEEeecCCCHHHHHHHHHHHhcCCCCCCeeeeccceecCCCCCC
Q 022946 230 EAGINVC--SGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQ 281 (289)
Q Consensus 230 ~~Gi~v~--~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~i~~~~p~pgTpl~ 281 (289)
+.|-++. .-+|-|+.++++++.++.+++..++ ....|.+.+|.|+++.++.
T Consensus 248 ~~g~~V~ieyvLIpGvNDs~e~a~~La~~l~~l~-~~~~VnLIPynp~~~~~~~ 300 (348)
T PRK14467 248 PPGRRIMLEYVLIKGVNDSPEDALRLAQLIGKNK-KKFKVNLIPFNPDPELPYE 300 (348)
T ss_pred hcCCeEEEEEEEECCccCCHHHHHHHHHHHhcCC-CceEEEEecCCCCCCCCCC
Confidence 5677655 4556688999999999999999874 2567889999998888764
No 123
>COG0641 AslB Arylsulfatase regulator (Fe-S oxidoreductase) [General function prediction only]
Probab=99.54 E-value=4.8e-13 Score=119.81 Aligned_cols=168 Identities=16% Similarity=0.237 Sum_probs=123.2
Q ss_pred cCC-CCcCCCCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHHc-CCcE--EEEecccCCCCCCchhH-HHHHHHHHH---
Q 022946 96 TGG-CSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEA-GSTR--FCMGAAWRDTIGRKTNF-NQILEYVKD--- 167 (289)
Q Consensus 96 t~~-C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~~-g~~~--i~i~~~~~~~~ge~~~~-~~l~e~i~~--- 167 (289)
|.. ||++|.||.+..... ..+.|+.+.+.+.++.+... +.+. |++.| |||+.. ..+.+.+..
T Consensus 14 t~~~CNL~C~YC~~~~~~~----~~~~Ms~etle~~i~~~~~~~~~~~v~~~w~G------GEPlL~~~~f~~~~~~l~~ 83 (378)
T COG0641 14 TGFECNLDCKYCFYLEKES----LQRIMSDETLEEYVRQYIAASNGDKVTFTWQG------GEPLLAGLDFYRKAVALQQ 83 (378)
T ss_pred ccCccCCCCCeeCcccCCC----CCCCCCHHHHHHHHHHHHhhCCCCeeEEEEEC------CccccchHHHHHHHHHHHH
Confidence 666 999999999875332 11259999998888887763 4466 44454 555322 344443333
Q ss_pred -HHhcCceE---EEeCCC-CCHHHHHHHHHcCCCeEecCCCchHHHHhccCC----CCCHHHHHHHHHHHHHcCCceeec
Q 022946 168 -IRDMGMEV---CCTLGM-LEKHQAIELKKAGLTAYNHNLDTSREFYSKIIT----TRSYDERLETLKHVREAGINVCSG 238 (289)
Q Consensus 168 -ik~~~~~i---~~~~g~-l~~e~l~~L~~aG~~~v~i~let~~~~~~~i~~----~~~~~~~~~~i~~~~~~Gi~v~~~ 238 (289)
.+. +..+ ..|||+ +++++++.|++.++ .|.++||+.++++++.++ ..+++.++++|+.+++.++.++..
T Consensus 84 k~~~-~~~i~~siqTNg~LL~~e~~e~l~~~~~-~IgISiDGp~eihD~~R~~~~GkgTfd~i~~~i~~L~~~~v~~~~~ 161 (378)
T COG0641 84 KYAN-GKTISNALQTNGTLLNDEWAEFLAEHDF-LIGISIDGPEEIHDKYRVTKSGKGTFDRVMKGLELLQAHGVDFNTL 161 (378)
T ss_pred HHhc-CCeeEEEEEEcccccCHHHHHHHHhcCc-eEEEeccCchHhccccccCCCCCccHHHHHHHHHHHHHcCCcEEEE
Confidence 333 5543 345775 89999999999999 999999999999999884 458999999999999999887776
Q ss_pred EEeecCCCHHHHHHHHHHHhcCCCCCCeeeeccceecCCC
Q 022946 239 GIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLAVKGT 278 (289)
Q Consensus 239 ~i~Glget~ed~~~~l~~l~~l~~~~~~v~i~~~~p~pgT 278 (289)
.++. .++.++..+.++++.+. +...+.|.+.++..++
T Consensus 162 ~vv~-~~n~~~~~ei~~~l~~~--g~~~i~fip~~~~~~~ 198 (378)
T COG0641 162 TVVN-RQNVLHPEEIYHFLKSE--GSKFIQFIPLVESDNR 198 (378)
T ss_pred EEEc-hhHhhCHHHHHHHHHHc--ccceEEEEecccCCCC
Confidence 6643 78888899999999888 4677777666554444
No 124
>TIGR03278 methan_mark_10 putative methanogenesis marker protein 10. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The presence of motifs with seven invariant Cys residues in the N-terminal 50 residues, including three instances of CXXC, would be consistent with function as an oxidoreductase with FeS clusters. The exact function is unknown, but likely is linked to methanogenesis. In most genomes, the member of this family is encoded by a gene next to, and divergently transcribed from, the methyl coenzyme M reductase operon.
Probab=99.53 E-value=9.9e-13 Score=118.70 Aligned_cols=147 Identities=15% Similarity=0.208 Sum_probs=116.7
Q ss_pred CCCCHHHHHHHHHHHHH-c--CCcEEEEecccCCCCCCchhHHHHHHHHHHHHhcCceEEE--eCC--CCCHHHHHHHHH
Q 022946 120 KLMTKDAVMQAAQKAKE-A--GSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMGMEVCC--TLG--MLEKHQAIELKK 192 (289)
Q Consensus 120 ~~~~~eei~~~~~~~~~-~--g~~~i~i~~~~~~~~ge~~~~~~l~e~i~~ik~~~~~i~~--~~g--~l~~e~l~~L~~ 192 (289)
..++++++++++..... + ....+++.|| |+|..++++.++++.+++.++.+.+ |+| ..+.+.++++++
T Consensus 52 ~~~t~~evl~ev~~d~~~~~~~~ggVtisGG-----Gepl~~~~l~eLl~~lk~~gi~taI~~TnG~~l~~~e~~~~L~~ 126 (404)
T TIGR03278 52 DFIPPQVVLGEVQTSLGFRTGRDTKVTISGG-----GDVSCYPELEELTKGLSDLGLPIHLGYTSGKGFDDPEIAEFLID 126 (404)
T ss_pred CcCCHHHHHHHHHHHHHHhcCCCCEEEEECC-----cccccCHHHHHHHHHHHhCCCCEEEeCCCCcccCCHHHHHHHHH
Confidence 45799999999987654 2 3467888774 4567779999999999987776543 664 458999999999
Q ss_pred cCCCeEecCCCch-HHHHhccCCCCCHHHHHHHHHHHHHcCCcee--ecEEeecCCCHHHHHHHHHHHhcCCCCCCeeee
Q 022946 193 AGLTAYNHNLDTS-REFYSKIITTRSYDERLETLKHVREAGINVC--SGGIIGLGEAEEDRVGLLHTLATLPTHPESVPI 269 (289)
Q Consensus 193 aG~~~v~i~let~-~~~~~~i~~~~~~~~~~~~i~~~~~~Gi~v~--~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~i 269 (289)
+|++.+.+++++. ++.++++.+....+.+++.++.+.+ ++.+. ..++-|+.++++. .++++++.++ ++..+.+
T Consensus 127 ~gld~v~iSvka~dpe~h~kl~G~~~a~~ILe~L~~L~e-~~~v~~~ivlIPGiND~eel-~~ti~~L~~l--g~~~V~L 202 (404)
T TIGR03278 127 NGVREVSFTVFATDPELRREWMKDPTPEASLQCLRRFCE-SCEVHAASVIIPGVNDGDVL-WKTCADLESW--GAKALIL 202 (404)
T ss_pred cCCCEEEEecccCCHHHHHHHhCCCCHHHHHHHHHHHHh-cCCEEEEEEEeCCccCcHHH-HHHHHHHHHC--CCCEEEE
Confidence 9999999999999 9999998886667999999999988 45544 3445566655554 6999999999 6888888
Q ss_pred ccceec
Q 022946 270 NALLAV 275 (289)
Q Consensus 270 ~~~~p~ 275 (289)
.+|.+.
T Consensus 203 ~~y~~~ 208 (404)
T TIGR03278 203 MRFANT 208 (404)
T ss_pred Eecccc
Confidence 888753
No 125
>PRK14457 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=99.52 E-value=2.4e-12 Score=114.17 Aligned_cols=171 Identities=16% Similarity=0.324 Sum_probs=128.1
Q ss_pred cCCCCcCCCCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHHc---CCcEEEEecccCCCCCCch-hHHHHHHHHHHHHh-
Q 022946 96 TGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEA---GSTRFCMGAAWRDTIGRKT-NFNQILEYVKDIRD- 170 (289)
Q Consensus 96 t~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~~---g~~~i~i~~~~~~~~ge~~-~~~~l~e~i~~ik~- 170 (289)
.-||+.+|.||..... + ..+.++.+||++.+...... +++.|+|.| .|||+ +++.+.++++.+++
T Consensus 108 qvGC~~~C~FC~tg~~---g--~~rnlt~~EIv~qv~~~~~~~~~~~~~IvfmG-----mGEPlln~~~v~~~i~~l~~~ 177 (345)
T PRK14457 108 QVGCPMACDFCATGKG---G--LKRSLKAHEIVDQVLTVQEDMQRRVSHVVFMG-----MGEPLLNIDEVLAAIRCLNQD 177 (345)
T ss_pred CCCCCCcCCcCCCCCC---C--CccccCHHHHHHHHHHHHHHhcCCCCEEEEEe-----cCccccCHHHHHHHHHHHhcc
Confidence 5699999999976531 2 22337999999998776542 578899987 36673 56889999988874
Q ss_pred cCc---eEE-EeCCCCCHHHHHHHHHcC------CC-eEecCCCch-HHHHhccCCC---CCHHHHHHHHHH-HHHcCCc
Q 022946 171 MGM---EVC-CTLGMLEKHQAIELKKAG------LT-AYNHNLDTS-REFYSKIITT---RSYDERLETLKH-VREAGIN 234 (289)
Q Consensus 171 ~~~---~i~-~~~g~l~~e~l~~L~~aG------~~-~v~i~let~-~~~~~~i~~~---~~~~~~~~~i~~-~~~~Gi~ 234 (289)
.++ .+. .|.|. .+.+++|.+.+ .+ .+.+++.+. ++.++++.|. ...++++++++. +.+.|-+
T Consensus 178 ~~i~~r~itvST~G~--~~~i~~L~~~~~~~~~~~~~~laiSLha~~~e~r~~i~p~~~~~~l~~l~~~~~~y~~~~gr~ 255 (345)
T PRK14457 178 LGIGQRRITVSTVGV--PKTIPQLAELAFQRLGRLQFTLAVSLHAPNQKLRETLIPSAKNYPIENLLEDCRHYVAITGRR 255 (345)
T ss_pred cCCccCceEEECCCc--hhhHHHHHhhhhhhcccCceEEEEEeCCCCHHHHHHhcCCccCCCHHHHHHHHHHHHHHhCCE
Confidence 455 333 45674 34578887776 23 578999999 9999999873 367888877766 6677865
Q ss_pred e--eecEEeecCCCHHHHHHHHHHHhcCCCCCCeeeeccceecCCCCCC
Q 022946 235 V--CSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQ 281 (289)
Q Consensus 235 v--~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~i~~~~p~pgTpl~ 281 (289)
+ ..-+|-|+.++.+++.++.++++.++ ..|.+.+|.|.++.++.
T Consensus 256 I~iey~LIpGvNDs~e~a~~La~~l~~l~---~~VnLIPynp~~~~~~~ 301 (345)
T PRK14457 256 VSFEYILLGGVNDLPEHAEELANLLRGFQ---SHVNLIPYNPIDEVEFQ 301 (345)
T ss_pred EEEEEEEECCcCCCHHHHHHHHHHHhcCC---CeEEEecCCCCCCCCCC
Confidence 4 45667799999999999999999982 47899999998887664
No 126
>COG1031 Uncharacterized Fe-S oxidoreductase [Energy production and conversion]
Probab=99.51 E-value=1.3e-12 Score=115.54 Aligned_cols=206 Identities=21% Similarity=0.324 Sum_probs=141.9
Q ss_pred HHHHHHHHhhhCCCeeEEeEeeccccCCCCcC----CCCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHHcCCcEEEEec
Q 022946 71 FHGAQVHRHAHNFREVQQCTLLSIKTGGCSED----CSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAGSTRFCMGA 146 (289)
Q Consensus 71 ~~a~~~~r~~~~g~~~~~~~~i~~~t~~C~~~----C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~~g~~~i~i~~ 146 (289)
...+.+.+++-+-.. ++..-|+. .+||+.. |+||.-+.. +.. ..+++|.|+++++.+...|+++|-++-
T Consensus 167 ~~GA~vv~qHP~yp~-~vi~EiET-yRGC~r~~~ggCSFCtEp~~---g~~--~~R~~e~Vv~EVkaLY~~GvrhFRlGR 239 (560)
T COG1031 167 PLGAEVVKQHPNYPE-YVICEIET-YRGCPRRVSGGCSFCTEPVR---GRP--EFRPPEDVVEEVKALYRAGVRHFRLGR 239 (560)
T ss_pred hccchHHHhCCCCcc-eEEEEEee-ccCCcccccCCCccccCcCc---CCc--ccCCHHHHHHHHHHHHHhccceeeecc
Confidence 344666666633222 33345776 8999975 999987742 222 235999999999999999999876631
Q ss_pred -------ccCCCCCC-c-hhHHHHHHHHHHHHhc--CceE-EEe---CCCC------CHHHHHHHHHcCC--CeEecCCC
Q 022946 147 -------AWRDTIGR-K-TNFNQILEYVKDIRDM--GMEV-CCT---LGML------EKHQAIELKKAGL--TAYNHNLD 203 (289)
Q Consensus 147 -------~~~~~~ge-~-~~~~~l~e~i~~ik~~--~~~i-~~~---~g~l------~~e~l~~L~~aG~--~~v~i~le 203 (289)
+..+.+++ | .+-+.+.++.+.++.. ++.+ ++. ++++ +.+.++.+.+.|- |.+.+|+|
T Consensus 240 Q~difsy~~~~~g~e~P~PnPealekL~~Gir~~AP~l~tLHiDNaNP~tIa~yp~eSr~i~K~ivky~TpGnVaAfGlE 319 (560)
T COG1031 240 QADIFSYGADDNGGEVPRPNPEALEKLFRGIRNVAPNLKTLHIDNANPATIARYPEESREIAKVIVKYGTPGNVAAFGLE 319 (560)
T ss_pred ccceeeecccccCCCCCCCCHHHHHHHHHHHHhhCCCCeeeeecCCCchhhhcChHHHHHHHHHHHhhCCCCceeeeecc
Confidence 11111121 1 2335555566666633 3332 222 2221 4455666666653 67889999
Q ss_pred ch-HHHHhccCCCCCHHHHHHHHHHHHHcC-------Cc---eeecEEeec-CCCHHHHHHHHHHHhcCCC---CCCeee
Q 022946 204 TS-REFYSKIITTRSYDERLETLKHVREAG-------IN---VCSGGIIGL-GEAEEDRVGLLHTLATLPT---HPESVP 268 (289)
Q Consensus 204 t~-~~~~~~i~~~~~~~~~~~~i~~~~~~G-------i~---v~~~~i~Gl-get~ed~~~~l~~l~~l~~---~~~~v~ 268 (289)
|+ +.+.++.+-..+.|+++++++.+.+.| ++ ...++++|+ |||.|.+.-..++|+++-+ .+..++
T Consensus 320 saDp~V~r~NnL~~spEEvl~AV~ivn~vG~~rg~nGlP~lLPGINfv~GL~GEtkeT~~ln~efL~~ild~gllvRRIN 399 (560)
T COG1031 320 SADPRVARKNNLNASPEEVLEAVEIVNEVGGGRGYNGLPYLLPGINFVFGLPGETKETYELNYEFLKEILDEGLLVRRIN 399 (560)
T ss_pred ccCHHHHhhccccCCHHHHHHHHHHHHHhcCccCcCCCccccccceeEecCCCccHHHHHhhHHHHHHHHhcCceEEEee
Confidence 99 888888777889999999999998854 32 577899999 9999999988888877421 356788
Q ss_pred eccceecCCCCCCCC
Q 022946 269 INALLAVKGTPLQDQ 283 (289)
Q Consensus 269 i~~~~p~pgTpl~~~ 283 (289)
+...+++|||||+.+
T Consensus 400 IRqV~~fpgT~~~~~ 414 (560)
T COG1031 400 IRQVVVFPGTPMWER 414 (560)
T ss_pred eeeEeecCCCchhhh
Confidence 999999999999975
No 127
>PRK14462 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=99.51 E-value=2.7e-12 Score=113.97 Aligned_cols=172 Identities=13% Similarity=0.236 Sum_probs=129.2
Q ss_pred cCCCCcCCCCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHHc------CCcEEEEecccCCCCCCc-hhHHHHHHHHHHH
Q 022946 96 TGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEA------GSTRFCMGAAWRDTIGRK-TNFNQILEYVKDI 168 (289)
Q Consensus 96 t~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~~------g~~~i~i~~~~~~~~ge~-~~~~~l~e~i~~i 168 (289)
.-||+.+|.||...+. + ..+.++++||++.+...... ....|++.| +||| ..++.+.++++.+
T Consensus 117 QvGC~~~C~FCatg~~---g--~~RnLt~~EIv~QV~~~~~~~~~~~~~~~~vVfmG-----mGEPL~N~d~v~~~l~~l 186 (356)
T PRK14462 117 QVGCKVGCAFCLTAKG---G--FVRNLSAGEIVGQILWIKKDNNIPYEKRVNIVYMG-----MGEPLDNLDNVSKAIKIF 186 (356)
T ss_pred cccCCCCCccCCCCCC---C--CcccCCHHHHHHHHHHHHHhhhccccccCCeEEeC-----CcccccCHHHHHHHHHHh
Confidence 5699999999977531 2 22458999999998755432 245677776 3667 4779999999999
Q ss_pred Hh-cCce-----EE-EeCCCCCHHHHHHHHHcCC-CeEecCCCch-HHHHhccCCC---CCHHHHHHHHHH-HHHcCCce
Q 022946 169 RD-MGME-----VC-CTLGMLEKHQAIELKKAGL-TAYNHNLDTS-REFYSKIITT---RSYDERLETLKH-VREAGINV 235 (289)
Q Consensus 169 k~-~~~~-----i~-~~~g~l~~e~l~~L~~aG~-~~v~i~let~-~~~~~~i~~~---~~~~~~~~~i~~-~~~~Gi~v 235 (289)
++ .|+. +. .|.|.. +.+++|.+..+ ..+.+|+.+. ++.++++.+. ...++++++++. +.+.|-.+
T Consensus 187 ~~~~Gl~~~~r~itVsTsG~~--~~i~~L~~~dl~v~LaiSLha~d~e~r~~l~pv~~~~~l~~ll~~l~~y~~~~~~~i 264 (356)
T PRK14462 187 SENDGLAISPRRQTISTSGLA--SKIKKLGEMNLGVQLAISLHAVDDELRSELMPINKAYNIESIIDAVRKFPIDQRKRV 264 (356)
T ss_pred cCccCCCcCCCceEEECCCCh--HHHHHHHhcCCCeEEEEECCCCCHHHHHHhCCCCccCCHHHHHHHHHHHHHHhCCeE
Confidence 85 4653 23 457755 46777887755 4566799999 9999999883 356899998885 55677665
Q ss_pred e--ecEEeecCCCHHHHHHHHHHHhcCCCCCCeeeeccceecCCCCCCC
Q 022946 236 C--SGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQD 282 (289)
Q Consensus 236 ~--~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~i~~~~p~pgTpl~~ 282 (289)
. ..+|-|+.++.+|+..+.++++.+ +..|.+.+|.|+++.++..
T Consensus 265 ~ieyvLI~GvNDs~e~a~~La~llk~l---~~~VnLIPyn~~~~~~~~~ 310 (356)
T PRK14462 265 MFEYLVIKDVNDDLKSAKKLVKLLNGI---KAKVNLILFNPHEGSKFER 310 (356)
T ss_pred EEEEEEECCCCCCHHHHHHHHHHHhhc---CcEEEEEeCCCCCCCCCCC
Confidence 4 456679999999999999999988 3689999999999887643
No 128
>COG2516 Biotin synthase-related enzyme [General function prediction only]
Probab=99.49 E-value=4.3e-13 Score=113.89 Aligned_cols=182 Identities=24% Similarity=0.374 Sum_probs=136.0
Q ss_pred cCCCCcCCCCCCCCCCCCCCC-------CCcCCCCHHHHHHHHHHHHHcCCcEEEEecccCCCCCCchhHHHHHHHHHHH
Q 022946 96 TGGCSEDCSYCPQSSRYDTGV-------KGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDI 168 (289)
Q Consensus 96 t~~C~~~C~fC~~~~~~~~~~-------~~~~~~~~eei~~~~~~~~~~g~~~i~i~~~~~~~~ge~~~~~~l~e~i~~i 168 (289)
-.+|..+|.||.+......+. ...+....+++++-..... ...++++++- ...|....++..+++.+
T Consensus 38 ~~~c~~~ca~c~~ar~s~a~p~~~~lsRv~w~~v~l~~~~~~~~~~~-g~~~rici~~-----i~~p~~~~d~~~i~~~~ 111 (339)
T COG2516 38 PGGCIADCAYCPQARSSTANPPKKVLSRVEWPAVALEEVLKRLFYDL-GNFKRICIQQ-----IAYPRALNDLKLILERL 111 (339)
T ss_pred CCceeechhhChhhhhcccCCCcceeeecccccchHHHHHhHhhhhh-ccccccccee-----eccccccchhhhhhhhh
Confidence 489999999998764322220 1122245566655543211 2267788754 22355667778888877
Q ss_pred H-hcCceEEEe----CCCCCHHHHHHHHHcCCCeEecCCCch-HHHHhccCC----CCCHHHHHHHHHHHHH-cC-Ccee
Q 022946 169 R-DMGMEVCCT----LGMLEKHQAIELKKAGLTAYNHNLDTS-REFYSKIIT----TRSYDERLETLKHVRE-AG-INVC 236 (289)
Q Consensus 169 k-~~~~~i~~~----~g~l~~e~l~~L~~aG~~~v~i~let~-~~~~~~i~~----~~~~~~~~~~i~~~~~-~G-i~v~ 236 (289)
. ..+.++.++ .-.+ .+.+...+++|.+.+.+.+|.+ +++++++++ .+++|+.++.++.+.+ .| -.+.
T Consensus 112 ~~~~~~~itiseci~~~~~-~~~l~e~~klg~d~l~V~~daa~~~~~e~v~~~s~s~~S~e~~~~~l~~~~~~~~k~rv~ 190 (339)
T COG2516 112 HIRLGDPITISECITAVSL-KEELEEYRKLGADYLGVAEDAANEELFEKVRKTSGSPHSWERYWEFLEKVAEAFGKGRVG 190 (339)
T ss_pred hhccCCceehhhhhhcccc-hHHHHHHHhcchhhhhHHHHhcCHHHHHHHHhccCCCCcHHHHHHHHHHHHHHhccCCcc
Confidence 7 566655433 2223 8889999999999999999999 999999943 3689999999999877 56 5799
Q ss_pred ecEEeecCCCHHHHHHHHHHHhcCCCCCCeeeeccceecCCCCCCCCCCCC
Q 022946 237 SGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQKLKY 287 (289)
Q Consensus 237 ~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~i~~~~p~pgTpl~~~~~~~ 287 (289)
.++++|+||++.++.+++..+...+ ..+.++.|.|..||.|++..+++
T Consensus 191 ihliVglGesD~~~ve~~~~v~~~g---~~v~Lfaf~P~~gt~me~r~~~p 238 (339)
T COG2516 191 IHLIVGLGESDKDIVETIKRVRKRG---GIVSLFAFTPLKGTQMENRKPPP 238 (339)
T ss_pred eeEEeccCCchHHHHHHHHHHHhcC---ceEEEEEecccccccccCCCCCc
Confidence 9999999999999999999999984 57889999999999999988765
No 129
>PRK14464 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=99.46 E-value=4.4e-12 Score=111.82 Aligned_cols=178 Identities=16% Similarity=0.293 Sum_probs=129.3
Q ss_pred eeccccCCCCcCCCCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHH-cCCcEEEEecccCCCCCCc-hhHHHHHHHHHHH
Q 022946 91 LLSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKE-AGSTRFCMGAAWRDTIGRK-TNFNQILEYVKDI 168 (289)
Q Consensus 91 ~i~~~t~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~-~g~~~i~i~~~~~~~~ge~-~~~~~l~e~i~~i 168 (289)
.|+. ..||+.+|.||..... +. .+.++.+||++.+..+.+ ..++.|+|.| .||| .+++.+++.++.+
T Consensus 99 CvSs-QvGC~~~C~FC~tg~~---g~--~RnLs~~EI~~Qv~~~~~~~~i~nIVfmG-----mGEPl~N~d~vl~ai~~l 167 (344)
T PRK14464 99 CVST-QVGCAVGCVFCMTGRS---GL--LRQLGSAEIVAQVVLARRRRAVKKVVFMG-----MGEPAHNLDNVLEAIDLL 167 (344)
T ss_pred EEEc-cCCcCCCCCcCcCCCC---CC--CCCCCHHHHHHHHHHHHhcCCCCEEEEec-----cCcccCCHHHHHHHHHHh
Confidence 3555 8899999999986531 22 234799999999887765 4589999988 3566 4668888888877
Q ss_pred Hhc---Cc-eE-EEeCCCCCHHHHHHHHHcCCC-eEecCCCch-HHHHhccCCC---CCHHHHHHHHHHH-HHcCCceee
Q 022946 169 RDM---GM-EV-CCTLGMLEKHQAIELKKAGLT-AYNHNLDTS-REFYSKIITT---RSYDERLETLKHV-REAGINVCS 237 (289)
Q Consensus 169 k~~---~~-~i-~~~~g~l~~e~l~~L~~aG~~-~v~i~let~-~~~~~~i~~~---~~~~~~~~~i~~~-~~~Gi~v~~ 237 (289)
.+. +. .+ ..+.|. .+.+.+|.+.++. .+.+|+.+. ++.++++.|. .+.++++++++.. ++.|-.+..
T Consensus 168 ~~~~~i~~r~itiST~G~--~~~i~rL~~~~v~~~LaiSLhA~~~e~R~~imP~~~~~~l~el~~a~~~~~~~~grri~~ 245 (344)
T PRK14464 168 GTEGGIGHKNLVFSTVGD--PRVFERLPQQRVKPALALSLHTTRAELRARLLPRAPRIAPEELVELGEAYARATGYPIQY 245 (344)
T ss_pred hchhcCCCceEEEecccC--chHHHHHHHhcCChHHHHHhcCCChhHhheeCCccCCCCHHHHHHHHHHHHHHHCCEEEE
Confidence 532 22 12 344563 3445777765442 456799999 9999999883 3789999988885 446766544
Q ss_pred --cEEeecCCCHHHHHHHHHHHhcCCCCCCeeeeccceecCCCCCCCCC
Q 022946 238 --GGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQK 284 (289)
Q Consensus 238 --~~i~Glget~ed~~~~l~~l~~l~~~~~~v~i~~~~p~pgTpl~~~~ 284 (289)
.++-|+.++.++..++.++++.+ ...|++.+|.|.+|+++...+
T Consensus 246 EyvLl~GVNDs~e~a~~L~~~l~~~---~~~vNLIPyN~v~g~~~~rp~ 291 (344)
T PRK14464 246 QWTLLEGVNDSDEEMDGIVRLLKGK---YAVMNLIPYNSVDGDAYRRPS 291 (344)
T ss_pred EEEEeCCCCCCHHHHHHHHHHHhcc---ccccceecCCccCCCCccCCC
Confidence 44448899999999999999877 467889999999998876543
No 130
>TIGR00238 KamA family protein. Note that the E. coli homolog was expressed in E. coli and purified and found not to display display lysine 2,3-aminomutase activity. Active site residues are found in 100 residue extension in B. subtilis. Name changed to KamA family protein.
Probab=99.45 E-value=4.2e-12 Score=112.67 Aligned_cols=167 Identities=15% Similarity=0.142 Sum_probs=118.6
Q ss_pred eeccccCCCCcCCCCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHH-cCCcEEEEecccCCCCCCchhH--HHHHHHHHH
Q 022946 91 LLSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKE-AGSTRFCMGAAWRDTIGRKTNF--NQILEYVKD 167 (289)
Q Consensus 91 ~i~~~t~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~-~g~~~i~i~~~~~~~~ge~~~~--~~l~e~i~~ 167 (289)
++.+ |.+||.+|+||...... .. . ...+.+++.+.++.+.. .|+.+|.|+||+ |... ..+.++++.
T Consensus 116 ll~~-T~gCn~~C~yC~~~~~~-~~--~-~~~~~~~~~~~i~~i~~~~~i~eV~lsGGD------PLl~~d~~L~~ll~~ 184 (331)
T TIGR00238 116 LFLV-KGGCAVNCRYCFRRHFP-YK--E-NPGNKKKWQKALDYIAEHPEIIEILISGGD------PLMAKDHELEWLLKR 184 (331)
T ss_pred EEEe-CCCCCCCCcCCCCCCcC-CC--C-CCccHHHHHHHHHHHHhCCCcCEEEEECCc------cccCCHHHHHHHHHH
Confidence 3455 99999999999874311 11 1 11136777777777765 478999998843 3222 236666666
Q ss_pred HHhc----CceEEEe-CC----CCCHHHHHHHHHcCCCeEecCCCch-HHHHhccCCCCCHHHHHHHHHHHHHcCCcee-
Q 022946 168 IRDM----GMEVCCT-LG----MLEKHQAIELKKAGLTAYNHNLDTS-REFYSKIITTRSYDERLETLKHVREAGINVC- 236 (289)
Q Consensus 168 ik~~----~~~i~~~-~g----~l~~e~l~~L~~aG~~~v~i~let~-~~~~~~i~~~~~~~~~~~~i~~~~~~Gi~v~- 236 (289)
+++. ++.+.+. ++ .++++.++.|+++|+..+.++.... +++ .++..++++.++++|+.+.
T Consensus 185 L~~i~~~~~IRi~tr~~~~~P~rit~el~~~L~~~~~~~~~vsh~nh~~Ei---------~~~~~~ai~~L~~aGi~v~~ 255 (331)
T TIGR00238 185 LEEIPHLVRLRIGTRLPVVIPQRITDELCELLASFELQLMLVTHINHCNEI---------TEEFAEAMKKLRTVNVTLLN 255 (331)
T ss_pred HHhcCCccEEEeecCCCccCchhcCHHHHHHHHhcCCcEEEEccCCChHhC---------CHHHHHHHHHHHHcCCEEEe
Confidence 6543 3444332 23 2699999999999999888886665 443 2678899999999999754
Q ss_pred -ecEEeecCCCHHHHHHHHHHHhcCCCCCCeeeeccceecCCCC
Q 022946 237 -SGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTP 279 (289)
Q Consensus 237 -~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~i~~~~p~pgTp 279 (289)
+.++-|..++.+++.++.+.+.++ ++....++.+.|.+|+.
T Consensus 256 qtvLl~gvnD~~~~l~~L~~~l~~~--gV~pyyl~~~~~~~g~~ 297 (331)
T TIGR00238 256 QSVLLRGVNDRAQILAKLSIALFKV--GIIPYYLHYLDKVQGAK 297 (331)
T ss_pred ecceECCcCCCHHHHHHHHHHHhhc--CeecCeecCcCCCCCcc
Confidence 456668888899999999999988 56677788888988874
No 131
>PRK14454 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=99.44 E-value=2e-11 Score=108.37 Aligned_cols=174 Identities=18% Similarity=0.343 Sum_probs=126.2
Q ss_pred eccccCCCCcCCCCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHH-c--CCcEEEEecccCCCCCCc-hhHHHHHHHHHH
Q 022946 92 LSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKE-A--GSTRFCMGAAWRDTIGRK-TNFNQILEYVKD 167 (289)
Q Consensus 92 i~~~t~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~-~--g~~~i~i~~~~~~~~ge~-~~~~~l~e~i~~ 167 (289)
|+. ..||+.+|.||.... .+ ..+.++++||++.+..... + .+..+++.| +||| .+++.+.++++.
T Consensus 105 vSs-qvGC~~~C~FC~tg~---~G--~~rnlt~~EI~~qv~~~~~~~~~~~~gvV~mg-----gGEPLln~d~v~~~l~~ 173 (342)
T PRK14454 105 VST-QVGCRMGCKFCASTI---GG--MVRNLTAGEMLDQILAAQNDIGERISNIVLMG-----SGEPLDNYENVMKFLKI 173 (342)
T ss_pred EEc-CCCCCCcCCcCCCCC---CC--CcccCCHHHHHHHHHHHHHHhcCCCCCEEEEC-----CchhhcCHHHHHHHHHH
Confidence 555 789999999998653 12 2234899999999876654 2 345655544 2667 466889999999
Q ss_pred HHh-cCc-----eEE-EeCCCCCHHHHHHHHHcCC-CeEecCCCch-HHHHhccCCC---CCHHHHHHHHHH-HHHcCCc
Q 022946 168 IRD-MGM-----EVC-CTLGMLEKHQAIELKKAGL-TAYNHNLDTS-REFYSKIITT---RSYDERLETLKH-VREAGIN 234 (289)
Q Consensus 168 ik~-~~~-----~i~-~~~g~l~~e~l~~L~~aG~-~~v~i~let~-~~~~~~i~~~---~~~~~~~~~i~~-~~~~Gi~ 234 (289)
+++ .|+ ++. .|.|..+ .+..|.+.++ ..+.+++.+. ++.++++.+. ...++.+++++. +.+.|.+
T Consensus 174 l~~~~gi~~~~r~itvsTsG~~p--~i~~l~~~~~~~~laisLka~d~e~r~~l~pv~~~~~L~~l~~~~~~~~~~~~~r 251 (342)
T PRK14454 174 VNSPYGLNIGQRHITLSTCGIVP--KIYELADENLQITLAISLHAPNDELRKKMMPIANKYSIEELIEACKYYINKTNRR 251 (342)
T ss_pred HhcccccCcCCCceEEECcCChh--HHHHHHhhcccceEEEecCCCCHHHHHHhcCCcccCCHHHHHHHHHHHHHHhCCE
Confidence 985 566 443 4577653 2566766542 3478999999 9999999883 356777777765 5567776
Q ss_pred ee--ecEEeecCCCHHHHHHHHHHHhcCCCCCCeeeeccceecCCCCCC
Q 022946 235 VC--SGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQ 281 (289)
Q Consensus 235 v~--~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~i~~~~p~pgTpl~ 281 (289)
+. .-+|-|+.++.+|+.++.++++.+ ...|.+.+|.|.++..+.
T Consensus 252 v~iey~LI~gvNDs~eda~~La~llk~l---~~~VnLiPyn~~~~~~~~ 297 (342)
T PRK14454 252 ITFEYALVKGVNDSKEDAKELGKLLKGM---LCHVNLIPVNEVKENGFK 297 (342)
T ss_pred EEEEEEeECCCCCCHHHHHHHHHHHhcC---CceEEEEecCCCCCCCCC
Confidence 54 456668899999999999999987 468888899888877653
No 132
>PRK14465 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=99.44 E-value=2.1e-11 Score=107.65 Aligned_cols=164 Identities=14% Similarity=0.243 Sum_probs=121.0
Q ss_pred cCCCCcCCCCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHH---cCCcEEEEecccCCCCCCc-hhHHHHHHHHHHHHh-
Q 022946 96 TGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKE---AGSTRFCMGAAWRDTIGRK-TNFNQILEYVKDIRD- 170 (289)
Q Consensus 96 t~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~---~g~~~i~i~~~~~~~~ge~-~~~~~l~e~i~~ik~- 170 (289)
.-||+.+|.||+..+ .+.. +.++.+||++.+-.+.. ..+..|+|.| .||| .+++.+++.++.+++
T Consensus 112 QvGC~m~C~FC~tg~---~g~~--rnlta~EI~~qv~~~~~~~~~~~~niVFmG-----mGEPL~N~d~V~~~~~~l~~~ 181 (342)
T PRK14465 112 QIGCTLNCKFCATAK---LEFQ--GNLKAHEIVDQVLQVEKIVGDRATNVVFMG-----MGEPMHNYFNVIRAASILHDP 181 (342)
T ss_pred cCCCCCCCCCCcCCC---CCcc--CCCCHHHHHHHHHHHHHhcCCCceEEEEEc-----CCcchhhHHHHHHHHHHHhCh
Confidence 669999999998764 2222 34689999988866654 3478888877 4778 466899999988873
Q ss_pred c--Cc---eE-EEeCCCCCHHHHHHHHH-cCCCeEecCCCch-HHHHhccCC---CCCHHHHHHHHHHH-HHcCCcee--
Q 022946 171 M--GM---EV-CCTLGMLEKHQAIELKK-AGLTAYNHNLDTS-REFYSKIIT---TRSYDERLETLKHV-REAGINVC-- 236 (289)
Q Consensus 171 ~--~~---~i-~~~~g~l~~e~l~~L~~-aG~~~v~i~let~-~~~~~~i~~---~~~~~~~~~~i~~~-~~~Gi~v~-- 236 (289)
. ++ .+ .+|+|.+ +. +..|.+ ..--.+.+|+++. ++.+.++.| ..+.++++++++.. ++.|-.+.
T Consensus 182 ~~~~~~~r~itvST~G~~-~~-i~~l~~~~~~~~LaiSLhA~~~e~R~~l~Pi~~~~~le~ll~al~~~~~~~~r~v~ie 259 (342)
T PRK14465 182 DAFNLGAKRITISTSGVV-NG-IRRFIENKEPYNFAISLNHPDPNGRLQIMDIEEKFPLEELLQAAKDFTRELKRRITFE 259 (342)
T ss_pred hhhcCCCCeEEEeCCCch-HH-HHHHHhhccCceEEEEecCCChhhcceEeeccccCCHHHHHHHHHHHHHHcCCEEEEE
Confidence 2 22 33 3568865 34 444443 3334789999999 999999976 45789999999965 46677755
Q ss_pred ecEEeecCCCHHHHHHHHHHHhcCCCCCCeeeecccee
Q 022946 237 SGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLA 274 (289)
Q Consensus 237 ~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~i~~~~p 274 (289)
..+|-|+.++.+|+.++.++++.++ ..|.+.+|.|
T Consensus 260 yvLI~GvNDs~eda~~L~~ll~~l~---~kVnLIPyN~ 294 (342)
T PRK14465 260 YVMIPGVNMGRENANKLVKIARSLD---CKINVIPLNT 294 (342)
T ss_pred EEEECCccCCHHHHHHHHHHHhhCC---CcEEEEccCC
Confidence 4556688999999999999999983 5677777777
No 133
>PRK11194 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=99.44 E-value=2.3e-11 Score=108.71 Aligned_cols=171 Identities=16% Similarity=0.280 Sum_probs=123.5
Q ss_pred cCCCCcCCCCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHHc----------CCcEEEEecccCCCCCCch-hHHHHHHH
Q 022946 96 TGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEA----------GSTRFCMGAAWRDTIGRKT-NFNQILEY 164 (289)
Q Consensus 96 t~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~~----------g~~~i~i~~~~~~~~ge~~-~~~~l~e~ 164 (289)
.-||+.+|.||..... +. .+.++.+||++.+..+... +++.|++.| .|||+ +++.+.++
T Consensus 110 QvGC~~~C~FC~t~~~---g~--~rnLt~~EIv~Qv~~~~~~~~~~~~~gg~~~~nvV~mG-----mGEPL~N~d~v~~a 179 (372)
T PRK11194 110 QVGCALECKFCSTAQQ---GF--NRNLRVSEIIGQVWRAAKIIGAAKVTGQRPITNVVMMG-----MGEPLLNLNNVVPA 179 (372)
T ss_pred CCCCCCcCCCCCCCCC---CC--CCcCCHHHHHHHHHHHHHHhhhccccCCcccceEEEec-----CCccccCHHHHHHH
Confidence 4799999999987631 22 2448999999988655431 277787777 36774 57888899
Q ss_pred HHHHH-hcC--c---eEE-EeCCCCCHHHHHHHHHcCCCeEecCCCch-HHHHhccCCC---CCHHHHHHHHHH-HHHcC
Q 022946 165 VKDIR-DMG--M---EVC-CTLGMLEKHQAIELKKAGLTAYNHNLDTS-REFYSKIITT---RSYDERLETLKH-VREAG 232 (289)
Q Consensus 165 i~~ik-~~~--~---~i~-~~~g~l~~e~l~~L~~aG~~~v~i~let~-~~~~~~i~~~---~~~~~~~~~i~~-~~~~G 232 (289)
++.++ +.| + .+. .|.|.. ..+++|.+..--.+.+++.+. ++.++++.|. ...++.+++++. +.+.|
T Consensus 180 l~~l~~~~g~~i~~r~itVsTsG~~--~~i~~l~~~~d~~LaiSLha~d~e~R~~lmPin~~~~l~~ll~a~~~y~~~~~ 257 (372)
T PRK11194 180 MEIMLDDFGFGLSKRRVTLSTSGVV--PALDKLGDMIDVALAISLHAPNDELRDEIVPINKKYNIETFLAAVRRYLEKSN 257 (372)
T ss_pred HHHHhhhhccCcCCCeEEEECCCCc--hHHHHHHhccCeEEEeeccCCCHHHHHHhcCCcccccHHHHHHHHHHHHHhcc
Confidence 98887 444 3 443 457754 345666665322566789998 9999999983 356788877666 44453
Q ss_pred -----CceeecEEeecCCCHHHHHHHHHHHhcCCCCCCeeeeccceecCCCCCC
Q 022946 233 -----INVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQ 281 (289)
Q Consensus 233 -----i~v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~i~~~~p~pgTpl~ 281 (289)
+.+..-+|-|+.++.+++.++.++++.+ . ..|.+.+|.|+++.++.
T Consensus 258 ~~~rrI~irypLIpGvNDs~e~a~~La~ll~~l--~-~~VnLIPYN~~~~~~~~ 308 (372)
T PRK11194 258 ANQGRVTVEYVMLDHVNDGTEHAHQLAELLKDT--P-CKINLIPWNPFPGAPYG 308 (372)
T ss_pred cCCCeEEEEEEeECCCCCCHHHHHHHHHHHhcC--C-ceEEEecCCCCCCCCCC
Confidence 3466677889999999999999999988 2 58999999999987763
No 134
>TIGR03820 lys_2_3_AblA lysine-2,3-aminomutase. This model describes lysine-2,3-aminomutase as found along with beta-lysine acetyltransferase in a two-enzyme pathway for making the compatible solute N-epsilon-acetyl-beta-lysine. This compatible solute, or osmolyte, is known to protect a number of methanogenic archaea against salt stress. The trusted cutoff distinguishes a tight clade with essentially full-length homology from additional homologs that are shorter or highly diverged in the C-terminal region. All members of this family have the radical SAM motif CXXXCXXC, while some but not all have a second copy of the motif in the C-terminal region.
Probab=99.44 E-value=1.4e-11 Score=110.89 Aligned_cols=173 Identities=13% Similarity=0.168 Sum_probs=121.1
Q ss_pred eeccccCCCCcCCCCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHHc-CCcEEEEecccCCCCCCchhHHHHHHHHHHHH
Q 022946 91 LLSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEA-GSTRFCMGAAWRDTIGRKTNFNQILEYVKDIR 169 (289)
Q Consensus 91 ~i~~~t~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~~-g~~~i~i~~~~~~~~ge~~~~~~l~e~i~~ik 169 (289)
++.+ |++|+..|+||....... .....++.+++.+.++.+.+. +++.|.|+||+... -.+ +.+..+++.++
T Consensus 111 Ll~v-T~~C~~~CryC~R~~~~g---~~~~~ls~eei~~~i~yI~~~p~I~~VlLSGGDPLl-l~d---~~L~~iL~~L~ 182 (417)
T TIGR03820 111 LFLV-SNTCAMYCRHCTRKRKVG---DRDSIPSKEQILEGIEYIRNTPQIRDVLLSGGDPLL-LSD---DYLDWILTELR 182 (417)
T ss_pred EEEE-cCCcCCCCcCCCCcccCC---cccccCCHHHHHHHHHHHHhcCCCCEEEEeCCcccc-CCh---HHHHHHHHHHh
Confidence 3444 999999999998753211 122346889999999888874 89999998854222 111 12333345554
Q ss_pred hc-Cc---eEEEe-----CCCCCHHHHHHHHHcCCCeEecCCCchHHHHhccCCCCCHHHHHHHHHHHHHcCCcee--ec
Q 022946 170 DM-GM---EVCCT-----LGMLEKHQAIELKKAGLTAYNHNLDTSREFYSKIITTRSYDERLETLKHVREAGINVC--SG 238 (289)
Q Consensus 170 ~~-~~---~i~~~-----~g~l~~e~l~~L~~aG~~~v~i~let~~~~~~~i~~~~~~~~~~~~i~~~~~~Gi~v~--~~ 238 (289)
+. ++ .+.+. ...++++.++.|++.+..+|.+++++.+|+ .++.+++++.++++|+.+. +.
T Consensus 183 ~IphV~~IRI~TR~pvv~P~RIT~ell~~Lk~~~~~~v~~h~nhp~Ei---------t~~a~~Al~~L~~aGI~l~nQsV 253 (417)
T TIGR03820 183 AIPHVEVIRIGTRVPVVLPQRITDELVAILKKHHPVWLNTHFNHPREI---------TASSKKALAKLADAGIPLGNQSV 253 (417)
T ss_pred hcCCCceEEEeeccccccccccCHHHHHHHHhcCCeEEEEeCCChHhC---------hHHHHHHHHHHHHcCCEEEeece
Confidence 33 33 34333 334789999999999988888888887543 5899999999999999854 45
Q ss_pred EEeecCCCHHHHHHHHHHHhcCCCCCCeeeeccceecCCCCCCC
Q 022946 239 GIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQD 282 (289)
Q Consensus 239 ~i~Glget~ed~~~~l~~l~~l~~~~~~v~i~~~~p~pgTpl~~ 282 (289)
++-|+.++.+-+.++.+.|.+++ +.--.++..-+.+|+.-+.
T Consensus 254 LLkGVND~~~~l~~L~~~L~~~g--V~PYYl~~~d~v~G~~hFr 295 (417)
T TIGR03820 254 LLAGVNDCPRIMKKLVHKLVANR--VRPYYLYQCDLSEGLSHFR 295 (417)
T ss_pred EECCcCCCHHHHHHHHHHHHHCC--CeeceeeeccCCCCccccc
Confidence 66688999999999999999884 4444455556677765443
No 135
>PRK14461 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=99.44 E-value=3.1e-11 Score=106.65 Aligned_cols=176 Identities=15% Similarity=0.267 Sum_probs=129.6
Q ss_pred cCCCCcCCCCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHH-----------------cCCcEEEEecccCCCCCCc-hh
Q 022946 96 TGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKE-----------------AGSTRFCMGAAWRDTIGRK-TN 157 (289)
Q Consensus 96 t~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~-----------------~g~~~i~i~~~~~~~~ge~-~~ 157 (289)
.-||+.+|.||+..+ .+. .+.++..||++.+..+.+ ..++.|+|.| .||| .+
T Consensus 114 QvGC~mgC~FCaTG~---~G~--~RNLt~~EIv~Qv~~~~~~l~~~~~~~~~~~~~~~~~i~NIVfMG-----MGEPL~N 183 (371)
T PRK14461 114 QAGCGMGCVFCATGT---LGL--LRNLSSGEIVAQVIWASRELRAMGAAISKRHAGPVGRVTNLVFMG-----MGEPFAN 183 (371)
T ss_pred cCCccCCCCcccCCC---CCc--ccCCCHHHHHHHHHHHHHHhhhcccccccccccccCceeeEEEEc-----cCCchhh
Confidence 559999999998764 222 345899999998866542 1267888877 4778 57
Q ss_pred HHHHHHHHHHHH-hc--Cc---eE-EEeCCCCCHHHHHHHHHcCC-CeEecCCCch-HHHHhccCC---CCCHHHHHHHH
Q 022946 158 FNQILEYVKDIR-DM--GM---EV-CCTLGMLEKHQAIELKKAGL-TAYNHNLDTS-REFYSKIIT---TRSYDERLETL 225 (289)
Q Consensus 158 ~~~l~e~i~~ik-~~--~~---~i-~~~~g~l~~e~l~~L~~aG~-~~v~i~let~-~~~~~~i~~---~~~~~~~~~~i 225 (289)
++.++++++.+. .. ++ .+ ..|.|. ...+++|.+.++ -.+.+|+-+. ++.++++.| ....+++++++
T Consensus 184 ydnV~~ai~il~d~~g~~is~R~ITVST~Gi--vp~I~~la~~~~~v~LAiSLHA~~~e~R~~lmPin~~ypl~eLl~a~ 261 (371)
T PRK14461 184 YDRWWQAVERLHDPQGFNLGARSMTVSTVGL--VKGIRRLANERLPINLAISLHAPDDALRSELMPVNRRYPIADLMAAT 261 (371)
T ss_pred HHHHHHHHHHhcCccccCcCCCceEEEeecc--hhHHHHHHhcccCceEEEEeCCCCHHHHHHhcCcccCCCHHHHHHHH
Confidence 799999998886 22 33 13 345674 344667776554 3677899999 999999998 45789999999
Q ss_pred HHHH-HcCCcee--ecEEeecCCCHHHHHHHHHHHhcCCCC---CCeeeeccceecCCCCCCCC
Q 022946 226 KHVR-EAGINVC--SGGIIGLGEAEEDRVGLLHTLATLPTH---PESVPINALLAVKGTPLQDQ 283 (289)
Q Consensus 226 ~~~~-~~Gi~v~--~~~i~Glget~ed~~~~l~~l~~l~~~---~~~v~i~~~~p~pgTpl~~~ 283 (289)
+... +.|-.+. ..+|=|+.++.+|..++.++++.++.. .-.|++.+|.|.+|+++...
T Consensus 262 ~~y~~~t~rrit~EYvLi~gvNDs~e~A~~L~~llk~~~~~~~l~~~VNLIp~Np~~~~~~~~p 325 (371)
T PRK14461 262 RDYIAKTRRRVSFEYVLLQGKNDHPEQAAALARLLRGEAPPGPLLVHVNLIPWNPVPGTPLGRS 325 (371)
T ss_pred HHHHHhhCCEEEEEEEEECCCCCCHHHHHHHHHHHcCCccccCCceEEEEecCCCCCCCCCCCC
Confidence 9854 4565544 456668899999999999999987210 35899999999999987653
No 136
>PRK14453 chloramphenicol/florfenicol resistance protein; Provisional
Probab=99.41 E-value=3e-11 Score=107.37 Aligned_cols=175 Identities=17% Similarity=0.285 Sum_probs=123.0
Q ss_pred eccccCCCCcCCCCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHHcC--CcEEEEecccCCCCCCchhHHHHHHHHHHHH
Q 022946 92 LSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAG--STRFCMGAAWRDTIGRKTNFNQILEYVKDIR 169 (289)
Q Consensus 92 i~~~t~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~~g--~~~i~i~~~~~~~~ge~~~~~~l~e~i~~ik 169 (289)
|+. .-||+++|.||..... ...+.++.+||++.+..+...| ++.|+|.| .|||+....++++++.++
T Consensus 104 vss-qvGC~~~C~FC~tg~~-----g~~rnLt~~EIv~qv~~~~~~~~~i~~IvfmG-----mGEPLln~~v~~~i~~l~ 172 (347)
T PRK14453 104 ISS-QCGCGFGCRFCATGSI-----GLKRNLTADEITDQLLYFYLNGHRLDSISFMG-----MGEALANPELFDALKILT 172 (347)
T ss_pred Eec-CCCcCCCCCCCCCCCC-----CCcccCCHHHHHHHHHHHHhcCCCcceEEEee-----cCCccCCHHHHHHHHHHh
Confidence 444 6799999999987631 2234589999999998776554 78898887 367765567888888776
Q ss_pred h---cCce---E-EEeCCCCCHHHHHHHHHc-CCCeEecCCCch-HHHHhccCCC---CCHHHHHHHHHHH-HHcCCc--
Q 022946 170 D---MGME---V-CCTLGMLEKHQAIELKKA-GLTAYNHNLDTS-REFYSKIITT---RSYDERLETLKHV-REAGIN-- 234 (289)
Q Consensus 170 ~---~~~~---i-~~~~g~l~~e~l~~L~~a-G~~~v~i~let~-~~~~~~i~~~---~~~~~~~~~i~~~-~~~Gi~-- 234 (289)
+ .++. + ..|+|..+ .++.|.+. .-..+.+++.+. ++.++++.+. ...++++++++.. .+.|.+
T Consensus 173 ~~~~~~~~~r~itVsT~G~~~--~i~~l~~~~~~v~LalSLha~dd~~r~~l~pi~~~~~L~~ll~~~~~~l~~~~~~V~ 250 (347)
T PRK14453 173 DPNLFGLSQRRITISTIGIIP--GIQRLTQEFPQVNLTFSLHSPFESQRSELMPINKRFPLNEVMKTLDEHIRHTGRKVY 250 (347)
T ss_pred cccccCCCCCcEEEECCCCch--hHHHHHhhccCcCEEEEecCCCHHHHHHhcCccccccHHHHHHHHHHHHHhcCCcEE
Confidence 3 2333 3 45678664 22333332 112345599999 8998888873 3577777777764 446765
Q ss_pred eeecEEeecCCCHHHHHHHHHHHhcCCC--CCCeeeeccceecCCCC
Q 022946 235 VCSGGIIGLGEAEEDRVGLLHTLATLPT--HPESVPINALLAVKGTP 279 (289)
Q Consensus 235 v~~~~i~Glget~ed~~~~l~~l~~l~~--~~~~v~i~~~~p~pgTp 279 (289)
+..-+|-|+.++.+++.+++++++.++. .+..|.+.+|.|.++.+
T Consensus 251 iry~LI~GvNDs~e~a~~L~~~lk~l~~~~~~~~VnLIPyn~~~~~~ 297 (347)
T PRK14453 251 IAYIMLEGVNDSKEHAEAVVGLLRNRGSWEHLYHVNLIPYNSTDKTP 297 (347)
T ss_pred EEEEeECCCCCCHHHHHHHHHHHhhccccCCcceEEEecCCCCCCCC
Confidence 4556777999999999999999998721 25689999999987754
No 137
>TIGR03821 AblA_like_1 lysine-2,3-aminomutase-related protein. Members of this protein form a distinctive clade, homologous to lysine-2,3-aminomutase (of Bacillus, Clostridium, and methanogenic archaea) and likely similar in function. Members of this family are found in E. coli, Buchnera, Yersinia, etc.
Probab=99.39 E-value=1.2e-11 Score=109.15 Aligned_cols=172 Identities=16% Similarity=0.232 Sum_probs=115.1
Q ss_pred eccccCCCCcCCCCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHH-cCCcEEEEecccCCCCCCchhHHHHHHHHHHHHh
Q 022946 92 LSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKE-AGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRD 170 (289)
Q Consensus 92 i~~~t~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~-~g~~~i~i~~~~~~~~ge~~~~~~l~e~i~~ik~ 170 (289)
+.+ |.+|+.+|+||...... ..+ ..++.+++.+.+..+.+ .+++.|.|+||+ +....+..+.++++.++.+..
T Consensus 100 ~~~-t~~Cn~~Cr~C~~~~~~---~~~-~~~~~~~~~~~i~~i~~~~~i~~VvltGGE-PL~~~d~~L~~ll~~l~~i~~ 173 (321)
T TIGR03821 100 LIV-TGGCAINCRYCFRRHFP---YQE-NQPNKAQWKEALEYIAQHPEINEVILSGGD-PLMAKDHRLDWLLNLLEQIPH 173 (321)
T ss_pred EEe-CCCcCCcCcCCCCCCcC---CCC-CCCCHHHHHHHHHHHHhcCCCCEEEEeCcc-cccCCchHHHHHHHHHHhCCC
Confidence 334 99999999999865321 111 12466777776776664 489999998843 221111123334433333321
Q ss_pred c-CceEEE-----eCCCCCHHHHHHHHHcCCCeEe-cCCCchHHHHhccCCCCCHHHHHHHHHHHHHcCCceee--cEEe
Q 022946 171 M-GMEVCC-----TLGMLEKHQAIELKKAGLTAYN-HNLDTSREFYSKIITTRSYDERLETLKHVREAGINVCS--GGII 241 (289)
Q Consensus 171 ~-~~~i~~-----~~g~l~~e~l~~L~~aG~~~v~-i~let~~~~~~~i~~~~~~~~~~~~i~~~~~~Gi~v~~--~~i~ 241 (289)
. .+.+.+ ....++++.++.|+++|+..+. +++++.+|+. +...++++.++++|+.+.. .++-
T Consensus 174 ~~~iri~tr~~~~~p~rit~el~~~L~~~~~~~~~~~h~dh~~Ei~---------d~~~~ai~~L~~~Gi~v~~qtvllk 244 (321)
T TIGR03821 174 LKRLRIHTRLPVVIPDRITSGLCDLLANSRLQTVLVVHINHANEID---------AEVADALAKLRNAGITLLNQSVLLR 244 (321)
T ss_pred CcEEEEecCcceeeHHHhhHHHHHHHHhcCCcEEEEeeCCChHhCc---------HHHHHHHHHHHHcCCEEEecceeeC
Confidence 1 122221 1125789999999999988775 5898875543 4578899999999997544 4445
Q ss_pred ecCCCHHHHHHHHHHHhcCCCCCCeeeeccceecCCCCC
Q 022946 242 GLGEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPL 280 (289)
Q Consensus 242 Glget~ed~~~~l~~l~~l~~~~~~v~i~~~~p~pgTpl 280 (289)
|+.++.+++.++.+.+.++ ++....++.+.|..|+.-
T Consensus 245 giNDn~~~l~~L~~~l~~~--gv~pyyl~~~~p~gg~~~ 281 (321)
T TIGR03821 245 GVNDNADTLAALSERLFDA--GVLPYYLHLLDKVQGAAH 281 (321)
T ss_pred CCCCCHHHHHHHHHHHHHc--CCeeCcccccCCCCCccc
Confidence 7789999999999999999 577778888899888664
No 138
>TIGR02494 PFLE_PFLC glycyl-radical enzyme activating protein family. This subset of the radical-SAM family (pfam04055) includes a number of probable activating proteins acting on different enzymes all requiring an amino-acid-centered radical. The closest relatives to this family are the pyruvate-formate lyase activating enzyme (PflA, 1.97.1.4, TIGR02493) and the anaerobic ribonucleotide reductase activating enzyme (TIGR02491). Included within this subfamily are activators of hydroxyphenyl acetate decarboxylase (HdpA, ), benzylsuccinate synthase (BssD, ), gycerol dehydratase (DhaB2, ) as well as enzymes annotated in E. coli as activators of different isozymes of pyruvate-formate lyase (PFLC and PFLE) however, these appear to lack characterization and may activate enzymes with distinctive functions. Most of the sequence-level variability between these forms is concentrated within an N-terminal domain which follows a conserved group of three cysteines and contains a variable pattern of 0
Probab=99.38 E-value=1.6e-11 Score=107.68 Aligned_cols=151 Identities=15% Similarity=0.180 Sum_probs=114.9
Q ss_pred CCHHHHHHHHHHHHH---cCCcEEEEecccCCCCCCchhHHHH-HHHHHHHHhcCceE-EEeCCCCCHHHHHHHHHcCCC
Q 022946 122 MTKDAVMQAAQKAKE---AGSTRFCMGAAWRDTIGRKTNFNQI-LEYVKDIRDMGMEV-CCTLGMLEKHQAIELKKAGLT 196 (289)
Q Consensus 122 ~~~eei~~~~~~~~~---~g~~~i~i~~~~~~~~ge~~~~~~l-~e~i~~ik~~~~~i-~~~~g~l~~e~l~~L~~aG~~ 196 (289)
++.+++.+.+..... .+...|+|.| |||+...++ .++++.+++.|+.+ ..|||.+..+.++++... ++
T Consensus 106 ~t~eel~~~i~~~~~~~~~~~~~V~~sG------GEPll~~~~l~~l~~~~k~~g~~~~i~TnG~~~~~~~~~ll~~-~d 178 (295)
T TIGR02494 106 MTVEEVMRVVLRDSIFYRNSGGGVTLSG------GEPLLQPEFALALLQACHERGIHTAVETSGFTPWETIEKVLPY-VD 178 (295)
T ss_pred CcHHHHHHHHHHHHHhcccCCCcEEeeC------cchhchHHHHHHHHHHHHHcCCcEeeeCCCCCCHHHHHHHHhh-CC
Confidence 578888888765432 2334677776 677666665 68999998877764 467898888888887764 78
Q ss_pred eEecCCCch-HHHHhccCCCCCHHHHHHHHHHHHHcCCceeec--EEeecCCCHHHHHHHHHHHhcCCCCCCeeeeccce
Q 022946 197 AYNHNLDTS-REFYSKIITTRSYDERLETLKHVREAGINVCSG--GIIGLGEAEEDRVGLLHTLATLPTHPESVPINALL 273 (289)
Q Consensus 197 ~v~i~let~-~~~~~~i~~~~~~~~~~~~i~~~~~~Gi~v~~~--~i~Glget~ed~~~~l~~l~~l~~~~~~v~i~~~~ 273 (289)
.+.+++++. ++.|+++.+ .+++.+++.++.+.+.|+.+... ++.|+.++.+++.++++++.+++..+..+.+.+|.
T Consensus 179 ~~~isl~~~~~~~~~~~~g-~~~~~vl~~i~~l~~~~~~~~i~~~~v~~~n~~~~ei~~l~~~~~~~~~~v~~v~l~~~~ 257 (295)
T TIGR02494 179 LFLFDIKHLDDERHKEVTG-VDNEPILENLEALAAAGKNVVIRIPVIPGFNDSEENIEAIAAFLRKLEPGVDEIDLLPYH 257 (295)
T ss_pred EEEEeeccCChHHHHHHhC-CChHHHHHHHHHHHhCCCcEEEEeceeCCcCCCHHHHHHHHHHHHHhccCCceEEecCCC
Confidence 899999999 999998866 47899999999999999875544 45577788899999999999983115688888888
Q ss_pred ecCCCCC
Q 022946 274 AVKGTPL 280 (289)
Q Consensus 274 p~pgTpl 280 (289)
|.+..++
T Consensus 258 ~~g~~~~ 264 (295)
T TIGR02494 258 RLGENKY 264 (295)
T ss_pred chhHHHH
Confidence 8765443
No 139
>KOG4355 consensus Predicted Fe-S oxidoreductase [General function prediction only]
Probab=99.38 E-value=5e-12 Score=109.45 Aligned_cols=191 Identities=18% Similarity=0.241 Sum_probs=130.8
Q ss_pred EeeccccCCCCcCCCCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHHcCCcEEEEecccCCCCCCc--hhHHHHHH-HHH
Q 022946 90 TLLSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRK--TNFNQILE-YVK 166 (289)
Q Consensus 90 ~~i~~~t~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~~g~~~i~i~~~~~~~~ge~--~~~~~l~e-~i~ 166 (289)
.+|.+ ..||-..|.||-.. +. .+.-. ..+.+++++.++...+.|+.+|++..-+...+|.+ ...+.++. +++
T Consensus 189 eIi~i-ntgclgaCtyckTk-ha-rg~l~--sy~~dslvervrt~f~egv~eIwltsedTgaygrdig~slp~ll~klv~ 263 (547)
T KOG4355|consen 189 EIISI-NTGCLGACTYCKTK-HA-RGLLA--SYPKDSLVERVRTSFEEGVCEIWLTSEDTGAYGRDIGKSLPKLLWKLVE 263 (547)
T ss_pred EEEEe-cccccccccccccc-cc-ccccc--cCCHHHHHHHHHHHHhcCcEEEEecccccchhhhhhhhhhHHHHHHHHH
Confidence 35666 77999999999763 11 12122 24899999999999999999999976444334432 12222322 223
Q ss_pred HHHh-cCceEEEeCCCCCHHHHHHHHHc----CCCe-EecCCCch-HHHHhccCCCCCHHHHHHHHHHHHH--cCCceee
Q 022946 167 DIRD-MGMEVCCTLGMLEKHQAIELKKA----GLTA-YNHNLDTS-REFYSKIITTRSYDERLETLKHVRE--AGINVCS 237 (289)
Q Consensus 167 ~ik~-~~~~i~~~~g~l~~e~l~~L~~a----G~~~-v~i~let~-~~~~~~i~~~~~~~~~~~~i~~~~~--~Gi~v~~ 237 (289)
.+.+ .+..+-++|-..--+.+++++.. .+-. +.+.+++. +.++-.+.+.....+.......+.+ .|+.+.+
T Consensus 264 ~iPe~cmlr~gmTnpP~ilehl~e~a~vlrhp~vYsflhvpvqsgsdsvl~emkreyc~~dfk~Vvd~LterVPgi~IAT 343 (547)
T KOG4355|consen 264 VIPESCMLRAGMTNPPYILEHLEEAAFVLRHPRVYSFLHVPVQSGSDSVLTEMKREYCNFDFKIVVDFLTERVPGITIAT 343 (547)
T ss_pred hcchhhhhhhcCCCCchHHHHHHHHHHHhcCCeEEEEEecccccCchhHHHHHHHHHhhhhHHHHHHHHHhhCCCcEEee
Confidence 3331 22333333332222223322221 2222 34578998 9999999887766666677777777 6999999
Q ss_pred cEEeec-CCCHHHHHHHHHHHhcCCCCCCeeeeccceecCCCCCCCCCCCC
Q 022946 238 GGIIGL-GEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQKLKY 287 (289)
Q Consensus 238 ~~i~Gl-get~ed~~~~l~~l~~l~~~~~~v~i~~~~p~pgTpl~~~~~~~ 287 (289)
++|.|+ +||++|+.++++.+++. +..++-++.|.|.||||.++..+++
T Consensus 344 DiIcgFPtETdeDFeeTmeLv~kY--KFPslfInQfyPRpGTPAAkmkki~ 392 (547)
T KOG4355|consen 344 DIICGFPTETDEDFEETMELVRKY--KFPSLFINQFYPRPGTPAAKMKKIP 392 (547)
T ss_pred eeeecCCCCchHHHHHHHHHHHHc--cCchhhhhhcCCCCCChHHhhhccc
Confidence 999999 99999999999999998 6788999999999999998877654
No 140
>COG4277 Predicted DNA-binding protein with the Helix-hairpin-helix motif [General function prediction only]
Probab=99.35 E-value=9.7e-12 Score=104.48 Aligned_cols=183 Identities=15% Similarity=0.198 Sum_probs=131.5
Q ss_pred ccCCCCcCCCCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHH-cCCcEEEEecccCCCCCCchhHHHHHHHHHHHH-hcC
Q 022946 95 KTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKE-AGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIR-DMG 172 (289)
Q Consensus 95 ~t~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~-~g~~~i~i~~~~~~~~ge~~~~~~l~e~i~~ik-~~~ 172 (289)
+||.|.++|.||-.....+ ..+.+ ++++||+..--.+.+ .-++.+++.+|..- ..+...+++++..+.++ +.+
T Consensus 60 lTN~CiyDC~YCINr~s~~--~pra~-ftp~Eiv~ltlnfYrRnYIeGLFLSSGvi~--~~DyTmE~mi~var~LRle~~ 134 (404)
T COG4277 60 LTNFCIYDCAYCINRSSND--TPRAR-FTPEEIVDLTLNFYRRNYIEGLFLSSGVIK--NPDYTMEEMIEVARILRLEHK 134 (404)
T ss_pred HhhhHHHhhHHHhccccCC--Ccccc-cCHHHHHHHHHHHHHHhhhhhheecccccc--CcchHHHHHHHHHHHHhhccc
Confidence 4999999999998754332 23334 799999988766655 44555666554321 22456788888888777 443
Q ss_pred ceEEEe----CCCCCHHHHHHHHHcCCCeEecCCCch-HHHHhccCCCCCHHHHHHHHHHHHHc---------------C
Q 022946 173 MEVCCT----LGMLEKHQAIELKKAGLTAYNHNLDTS-REFYSKIITTRSYDERLETLKHVREA---------------G 232 (289)
Q Consensus 173 ~~i~~~----~g~l~~e~l~~L~~aG~~~v~i~let~-~~~~~~i~~~~~~~~~~~~i~~~~~~---------------G 232 (289)
+.-.++ +| -+++.+++.-.. +|+|++++|.. ++-++.+.+.+++.++++.+.+++.. -
T Consensus 135 f~GYIHlK~IPg-as~~li~eagly-adRvSiNIElp~~~~lk~lap~K~p~dI~r~Mg~ir~~i~e~~e~~~r~r~tp~ 212 (404)
T COG4277 135 FRGYIHLKIIPG-ASPDLIKEAGLY-ADRVSINIELPTDDGLKLLAPEKDPTDILRSMGWIRLKILENAEDKRRKRHTPE 212 (404)
T ss_pred cCcEEEEEecCC-CCHHHHHHHhhh-hheeEEeEecCCcchhhhhCCCCChHHHHHHHHHHHHHHhhcccchhhhccCcc
Confidence 332222 34 345555555444 69999999999 99999999999989998888887651 1
Q ss_pred C-c--eeecEEeec-CCCHHHHHHHHHHHhc-CCCCCCeeeeccceecCCCCCCCCCCC
Q 022946 233 I-N--VCSGGIIGL-GEAEEDRVGLLHTLAT-LPTHPESVPINALLAVKGTPLQDQKLK 286 (289)
Q Consensus 233 i-~--v~~~~i~Gl-get~ed~~~~l~~l~~-l~~~~~~v~i~~~~p~pgTpl~~~~~~ 286 (289)
+ + -.+.+|+|- +||++++...-++|.. . ....|.+..|.|.|+||+....++
T Consensus 213 fapaGQSTQmivGA~~~tD~~Ilsrs~~ly~~y--~lkRVyySaf~Pv~~s~~lp~~~p 269 (404)
T COG4277 213 FAPAGQSTQMIVGADGETDEDILSRSENLYGRY--SLKRVYYSAFSPVPSSPLLPDDKP 269 (404)
T ss_pred ccCCCCceEEEEecCCCchHHHHHHHHHHhhcc--ceeEEEeecccccCCCCCCcccCC
Confidence 1 1 346799999 9999999999999864 4 467899999999999998764443
No 141
>KOG2492 consensus CDK5 activator-binding protein [Signal transduction mechanisms]
Probab=99.34 E-value=1.7e-11 Score=106.97 Aligned_cols=186 Identities=17% Similarity=0.257 Sum_probs=138.7
Q ss_pred EeeccccCCCCcCCCCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHHcCCcEEEEecccCCCCCC---------------
Q 022946 90 TLLSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGR--------------- 154 (289)
Q Consensus 90 ~~i~~~t~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~~g~~~i~i~~~~~~~~ge--------------- 154 (289)
+.+++ .+||++-|.||-++-. .+ +.+..+++.|+++++.+.+.|+++|++.|..-+.+..
T Consensus 222 AFvSi-MRGCdNMCtyCiVpft--rG--reRsrpi~siv~ev~~L~~qG~KeVTLLGQNVNSyrD~s~~~~~~a~~~~~~ 296 (552)
T KOG2492|consen 222 AFVSI-MRGCDNMCTYCIVPFT--RG--RERSRPIESIVEEVKRLAEQGVKEVTLLGQNVNSYRDNSAVQFSSAVPTNLS 296 (552)
T ss_pred hHHHH-HhccccccceEEEecc--CC--cccCCchHHHHHHHHHHhhcCceeeeeecccccccccchhhhhccCCccccC
Confidence 46777 8999999999987632 23 3344599999999999999999999987632111100
Q ss_pred --------c----hhHHHHHHHHHHHH-hcCceEEE-eCCCCCHHHHHHHHHcC--CCeEecCCCch-HHHHhccCCCCC
Q 022946 155 --------K----TNFNQILEYVKDIR-DMGMEVCC-TLGMLEKHQAIELKKAG--LTAYNHNLDTS-REFYSKIITTRS 217 (289)
Q Consensus 155 --------~----~~~~~l~e~i~~ik-~~~~~i~~-~~g~l~~e~l~~L~~aG--~~~v~i~let~-~~~~~~i~~~~~ 217 (289)
+ +.|..+++-+.... ++.+.+.. ++-.+++|+++.+.+.- +..+.+..++. .++++.++++.+
T Consensus 297 ~GFst~yK~K~gGl~Fa~LLd~vs~~~PemR~RFTSPHPKDfpdevl~li~~rdnickqihlPAqSgds~vLE~mrRgys 376 (552)
T KOG2492|consen 297 PGFSTVYKPKQGGLRFAHLLDQVSRADPEMRIRFTSPHPKDFPDEVLELIRDRDNICKQIHLPAQSGDSRVLEIMRRGYS 376 (552)
T ss_pred CCceeeecccCCCccHHHHHHHHhhhCcceEEEecCCCCCCChHHHHHHHHhCcchhheeeccccCCchHHHHHHHccCC
Confidence 0 22344444443332 23333322 14558899999888863 45566788999 999999999999
Q ss_pred HHHHHHHHHHHHH--cCCceeecEEeec-CCCHHHHHHHHHHHhcCCCCCCeeeeccceecCCCCCCC
Q 022946 218 YDERLETLKHVRE--AGINVCSGGIIGL-GEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQD 282 (289)
Q Consensus 218 ~~~~~~~i~~~~~--~Gi~v~~~~i~Gl-get~ed~~~~l~~l~~l~~~~~~v~i~~~~p~pgTpl~~ 282 (289)
.+..++....++. .|....++||.|+ |||.+|...++-.+++. +-+.+-.+++.-..+|..+.
T Consensus 377 reayl~lv~~Irs~iPgVglssdfitgfCgeTeedhq~t~sLlrqV--gYdv~~lFaysmR~kT~ay~ 442 (552)
T KOG2492|consen 377 REAYLELVAHIRSMIPGVGLSSDFITGFCGETEEDHQYTVSLLRQV--GYDVVFLFAYSMREKTRAYH 442 (552)
T ss_pred hHhhhhHHHHHHhhCCCCcceeeeEecccCCChHHHHHHHHHHHHh--ccCeeeeEEeeecccchhhh
Confidence 9999999999999 4778889999999 99999999999999998 47777788888777776654
No 142
>TIGR03365 Bsubt_queE 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE. This uncharacterized enzyme, designated QueE, participates in the biosynthesis, from GTP, of 7-cyano-7-deazaguanosine, also called preQ0 because in many species it is a precursor of queuosine. In most Archaea, it is instead the precursor of a different tRNA modified base, archaeosine.
Probab=99.32 E-value=1.5e-10 Score=98.22 Aligned_cols=130 Identities=15% Similarity=0.218 Sum_probs=94.9
Q ss_pred cCCCCcCCCCCCCCCCCCCCC-CCcCCCCHHHHHHHHHHHHHcCCcEEEEecccCCCCCCchhHHHHHHHHHHHHhcCce
Q 022946 96 TGGCSEDCSYCPQSSRYDTGV-KGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMGME 174 (289)
Q Consensus 96 t~~C~~~C~fC~~~~~~~~~~-~~~~~~~~eei~~~~~~~~~~g~~~i~i~~~~~~~~ge~~~~~~l~e~i~~ik~~~~~ 174 (289)
+.+||++|.||.....+.... .....++.+++++.++.+...++..|+|+| |||+..+.+.++++.+++.|+.
T Consensus 29 ~~gCNlrC~~Cdt~~~~~~~~~~~~~~~s~~ei~~~i~~~~~~~~~~V~lTG------GEPll~~~l~~li~~l~~~g~~ 102 (238)
T TIGR03365 29 TGGCDYRCSWCDSLFTWDGSAKDTWRPMTAEEVWQELKALGGGTPLHVSLSG------GNPALQKPLGELIDLGKAKGYR 102 (238)
T ss_pred eCCcCCcCcCCCCccccCcccCCccccCCHHHHHHHHHHHhCCCCCeEEEeC------CchhhhHhHHHHHHHHHHCCCC
Confidence 889999999998653222111 122347999999999877666788898887 6887778999999999988887
Q ss_pred E-EEeCCCCCHHHHHHHHHcCCCeEecCCCchHHHHhccCCCCCHHHHHHHHHHHHHcCCceeecEEee
Q 022946 175 V-CCTLGMLEKHQAIELKKAGLTAYNHNLDTSREFYSKIITTRSYDERLETLKHVREAGINVCSGGIIG 242 (289)
Q Consensus 175 i-~~~~g~l~~e~l~~L~~aG~~~v~i~let~~~~~~~i~~~~~~~~~~~~i~~~~~~Gi~v~~~~i~G 242 (289)
+ ..|||.+..+. ++. ++.+.++++.... .....++...++++.+++ |..+...++++
T Consensus 103 v~leTNGtl~~~~---l~~--~d~v~vs~K~~~s-----g~~~~~~~~~~~ik~l~~-~~~~~vK~Vv~ 160 (238)
T TIGR03365 103 FALETQGSVWQDW---FRD--LDDLTLSPKPPSS-----GMETDWQALDDCIERLDD-GPQTSLKVVVF 160 (238)
T ss_pred EEEECCCCCcHHH---Hhh--CCEEEEeCCCCCC-----CCCCcHHHHHHHHHHhhh-cCceEEEEEEC
Confidence 6 45789876652 333 5688888876511 112358888888888887 67777777876
No 143
>COG2108 Uncharacterized conserved protein related to pyruvate formate-lyase activating enzyme [General function prediction only]
Probab=99.26 E-value=1.9e-10 Score=98.05 Aligned_cols=170 Identities=19% Similarity=0.299 Sum_probs=116.4
Q ss_pred HhhhCCCeeEEeEeeccccCCCCcCCCCCCCCCCCC-CC---CCCcCCCCHHHHHHHHHHHHHcCCcEEEEecccCCCCC
Q 022946 78 RHAHNFREVQQCTLLSIKTGGCSEDCSYCPQSSRYD-TG---VKGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIG 153 (289)
Q Consensus 78 r~~~~g~~~~~~~~i~~~t~~C~~~C~fC~~~~~~~-~~---~~~~~~~~~eei~~~~~~~~~~g~~~i~i~~~~~~~~g 153 (289)
+....|.+..+. .|+.||.+|.||..+.... .. ....+..+.++|+++++.....|+ .++| |
T Consensus 22 ~~C~~G~KlVlF-----vTG~C~~~CfYCPvs~~r~gkdviyaNErpV~~~eDii~ea~~~~a~Ga---siTG------G 87 (353)
T COG2108 22 RLCVLGGKLVLF-----VTGLCNRSCFYCPVSDERKGKDVIYANERPVKSVEDIIEEAKLMDALGA---SITG------G 87 (353)
T ss_pred HHHhcCCceEEE-----EecccCCCcccCcCCHHhcCCcceeecccccCcHHHHHHHHHHhccccc---cccC------C
Confidence 344456666443 3999999999998864321 11 112344577888888776655554 4444 4
Q ss_pred Cc-hhHHHHHHHHHHHH-hcCc--e--EEEeCCCCCHHHHHHHHHcCCCeEecCCCchHHHHhccCCCCCHHHHHHHHHH
Q 022946 154 RK-TNFNQILEYVKDIR-DMGM--E--VCCTLGMLEKHQAIELKKAGLTAYNHNLDTSREFYSKIITTRSYDERLETLKH 227 (289)
Q Consensus 154 e~-~~~~~l~e~i~~ik-~~~~--~--i~~~~g~l~~e~l~~L~~aG~~~v~i~let~~~~~~~i~~~~~~~~~~~~i~~ 227 (289)
+| ..+++.+++++.+| +.|- . ..++.-..+++.+++|.+||+|.|-+..... .....+.++++++.
T Consensus 88 dPl~~ieR~~~~ir~LK~efG~~fHiHLYT~g~~~~~e~l~~L~eAGLDEIRfHp~~~--------~~~~~e~~i~~l~~ 159 (353)
T COG2108 88 DPLLEIERTVEYIRLLKDEFGEDFHIHLYTTGILATEEALKALAEAGLDEIRFHPPRP--------GSKSSEKYIENLKI 159 (353)
T ss_pred ChHHHHHHHHHHHHHHHHhhccceeEEEeeccccCCHHHHHHHHhCCCCeEEecCCCc--------cccccHHHHHHHHH
Confidence 56 46789999999998 4443 3 3344445899999999999999998876311 12467899999999
Q ss_pred HHHcCCceeecEEeecCCCHHHHHHHHHHHhcCCCCCCeeeeccc
Q 022946 228 VREAGINVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINAL 272 (289)
Q Consensus 228 ~~~~Gi~v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~i~~~ 272 (289)
+++.|+.+..-+.. +..-.+.+.+.++++.+. +.+.++++.+
T Consensus 160 A~~~g~dvG~EiPa-ipg~e~~i~e~~~~~~~~--~~~FlNiNEL 201 (353)
T COG2108 160 AKKYGMDVGVEIPA-IPGEEEAILEFAKALDEN--GLDFLNINEL 201 (353)
T ss_pred HHHhCccceeecCC-CcchHHHHHHHHHHHHhc--ccceeeeeee
Confidence 99999987655432 322345788888888888 4677777765
No 144
>COG0820 Predicted Fe-S-cluster redox enzyme [General function prediction only]
Probab=99.22 E-value=1.3e-09 Score=95.15 Aligned_cols=172 Identities=19% Similarity=0.343 Sum_probs=124.4
Q ss_pred cCCCCcCCCCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHH-cC------CcEEEEecccCCCCCCc-hhHHHHHHHHHH
Q 022946 96 TGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKE-AG------STRFCMGAAWRDTIGRK-TNFNQILEYVKD 167 (289)
Q Consensus 96 t~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~-~g------~~~i~i~~~~~~~~ge~-~~~~~l~e~i~~ 167 (289)
.-||+..|.||+..+. + -.+.++..||++.+..+.+ .| ++.|+|.| .||| .+++.+..+++-
T Consensus 108 QvGC~~~C~FCaTg~~---G--~~RNLs~~EIv~Qv~~~~~~~~~~~~~~i~NVV~MG-----MGEPl~N~dnV~~a~~i 177 (349)
T COG0820 108 QVGCPVGCTFCATGQG---G--LNRNLSAGEIVEQVLLAAKALGEDFGRRISNVVFMG-----MGEPLLNLDNVVKALEI 177 (349)
T ss_pred CCCcCCCCCeeccccc---c--ceeccCHHHHHHHHHHHHHhcCccccceeeeEEEec-----CCchhhhHHHHHHHHHh
Confidence 5599999999998742 2 2345899999998877652 22 55677776 4777 578889999888
Q ss_pred HH-hcCce-----E-EEeCCCCCHHHHHHHHHcCC-CeEecCCCch-HHHHhccCC---CCCHHHHHHHHHHHHH-cCCc
Q 022946 168 IR-DMGME-----V-CCTLGMLEKHQAIELKKAGL-TAYNHNLDTS-REFYSKIIT---TRSYDERLETLKHVRE-AGIN 234 (289)
Q Consensus 168 ik-~~~~~-----i-~~~~g~l~~e~l~~L~~aG~-~~v~i~let~-~~~~~~i~~---~~~~~~~~~~i~~~~~-~Gi~ 234 (289)
+. ..|+. + ..|.| +.+ .+.+|.+..+ -.+.+|+.+. ++.++.+.| ..+.++.+++++...+ .|-.
T Consensus 178 ~~~~~G~~ls~R~iTvSTsG-i~~-~I~~l~~~~~~v~LAiSLHa~nd~lR~~L~Pink~~~~e~l~~a~r~Y~~~t~~r 255 (349)
T COG0820 178 INDDEGLGLSKRRITVSTSG-IVP-RIRKLADEQLGVALAISLHAPNDELRDQLMPINKKYPIEELLEAIRYYPEKSGRR 255 (349)
T ss_pred hcCcccccccceEEEEecCC-Cch-hHHHHHhhcCCeEEEEecCCCCHHHHhhhhccccCCCHHHHHHHHHhhhhccCce
Confidence 77 33332 2 34466 333 3555553222 3677899999 999998887 3478999999999655 5555
Q ss_pred ee--ecEEeecCCCHHHHHHHHHHHhcCCCCCCeeeeccceecCCCCCCC
Q 022946 235 VC--SGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQD 282 (289)
Q Consensus 235 v~--~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~i~~~~p~pgTpl~~ 282 (289)
|+ ..++-|+.+..++..++++.+..+ +..|++.+|.|.||+.+..
T Consensus 256 Vt~EY~Ll~~VND~~e~A~~L~~ll~~~---~~~VNLIP~Np~~~~~y~r 302 (349)
T COG0820 256 VTFEYVLLDGVNDSLEHAKELAKLLKGI---PCKVNLIPYNPVPGSDYER 302 (349)
T ss_pred EEEEeeecccccCCHHHHHHHHHHhcCC---CceEEEeecCCCCCCCccC
Confidence 54 455667788899999999998887 5699999999999999544
No 145
>COG5014 Predicted Fe-S oxidoreductase [General function prediction only]
Probab=99.21 E-value=3.6e-10 Score=87.78 Aligned_cols=167 Identities=18% Similarity=0.238 Sum_probs=113.2
Q ss_pred ccCCCCcCCCCCCCCCCCCCCCCCcCCCCHHHHHHHHHHH-HHcCCcEEEEecccCCCCCCchhHHHHHHHHHHHHhcCc
Q 022946 95 KTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKA-KEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMGM 173 (289)
Q Consensus 95 ~t~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~-~~~g~~~i~i~~~~~~~~ge~~~~~~l~e~i~~ik~~~~ 173 (289)
.+-|||+.|.||..............++++++|.+.+.++ +..|.+.+-+.|+. +.. ..+.+++.|+-+-+. .
T Consensus 47 D~VGCnl~CayCw~y~r~~~~~rag~f~~P~eVaeRL~ei~K~~g~d~vRiSG~E-P~l----~~EHvlevIeLl~~~-t 120 (228)
T COG5014 47 DTVGCNLLCAYCWNYFRNLRPKRAGDFLSPEEVAERLLEISKKRGCDLVRISGAE-PIL----GREHVLEVIELLVNN-T 120 (228)
T ss_pred cccccceeeHHhhhhhhcCCccccccccCHHHHHHHHHHHHHhcCCcEEEeeCCC-ccc----cHHHHHHHHHhccCc-e
Confidence 3679999999997643322333455678999998887554 56899999888742 222 336677777655322 2
Q ss_pred eEEEeCCC---CCHHHHHHHHHcCCCeEecCCCch-HHHHhccCC--CCCHHHHHHHHHHHHHcCCceeecEEeec-CCC
Q 022946 174 EVCCTLGM---LEKHQAIELKKAGLTAYNHNLDTS-REFYSKIIT--TRSYDERLETLKHVREAGINVCSGGIIGL-GEA 246 (289)
Q Consensus 174 ~i~~~~g~---l~~e~l~~L~~aG~~~v~i~let~-~~~~~~i~~--~~~~~~~~~~i~~~~~~Gi~v~~~~i~Gl-get 246 (289)
-+.-|||. .++..+++|...---.|.+++.+. ++.+.+|.. +.-|..-+++++.+++.|+.+...+++++ .|.
T Consensus 121 FvlETNG~~~g~drslv~el~nr~nv~vRVsvKG~dpesF~kIT~asp~~F~~QL~aLr~L~~~g~rf~pA~~~~f~~Ed 200 (228)
T COG5014 121 FVLETNGLMFGFDRSLVDELVNRLNVLVRVSVKGWDPESFEKITGASPEYFRYQLKALRHLHGKGHRFWPAVVYDFFRED 200 (228)
T ss_pred EEEEeCCeEEecCHHHHHHHhcCCceEEEEEecCCCHHHHHHHhcCChHHHHHHHHHHHHHHhcCceeeehhhhccchhh
Confidence 24456665 388888988875344677999999 999999975 23478889999999999999998889888 332
Q ss_pred HHHHHHHHHHHhcCCCCCCeeee
Q 022946 247 EEDRVGLLHTLATLPTHPESVPI 269 (289)
Q Consensus 247 ~ed~~~~l~~l~~l~~~~~~v~i 269 (289)
...++...|.+.+.-|..+.+
T Consensus 201 --~~k~Lak~Lgehp~~P~~iev 221 (228)
T COG5014 201 --GLKELAKRLGEHPPIPCRIEV 221 (228)
T ss_pred --hHHHHHHHhccCCCCCcceee
Confidence 222344445444322334433
No 146
>KOG2876 consensus Molybdenum cofactor biosynthesis pathway protein [Coenzyme transport and metabolism]
Probab=99.20 E-value=1.6e-11 Score=101.48 Aligned_cols=177 Identities=21% Similarity=0.340 Sum_probs=132.6
Q ss_pred eccccCCCCcCCCCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHHcCCcEEEEecccCCCCCCchhHHHHHHHHHHHHhc
Q 022946 92 LSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDM 171 (289)
Q Consensus 92 i~~~t~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~~g~~~i~i~~~~~~~~ge~~~~~~l~e~i~~ik~~ 171 (289)
++. |..||++|.||......... ...++++.++++..+..+..+|++.+-+.| |+|.-+.++.+.+..+...
T Consensus 15 isl-te~cnlrc~ycMpsegv~l~-pk~~~lav~eilrl~~~F~~qgv~knrLtg------geptIr~di~~i~~g~~~l 86 (323)
T KOG2876|consen 15 ISL-TEKCNLRCQYCMPSEGVPLK-PKRKLLAVSEILRLAGLFAPQGVDKNRLTG------GEPLIRQDIVPIVAGLSSL 86 (323)
T ss_pred hhh-hhccccccceechhcCCcCc-cchhhcchhhhHHhhhhhhHhhhhhhhhcC------CCCcccccccchhhhhhcc
Confidence 344 89999999999766432111 234557899999999999999999888876 5666667777777666533
Q ss_pred -Cce--EEEeCCCCCHHHHHHHHHcCCCeEecCCCch-HHHHhccCCCCCHHHHHHHHHHHHHcCC---ceeecEEeecC
Q 022946 172 -GME--VCCTLGMLEKHQAIELKKAGLTAYNHNLDTS-REFYSKIITTRSYDERLETLKHVREAGI---NVCSGGIIGLG 244 (289)
Q Consensus 172 -~~~--i~~~~g~l~~e~l~~L~~aG~~~v~i~let~-~~~~~~i~~~~~~~~~~~~i~~~~~~Gi---~v~~~~i~Glg 244 (289)
+++ -.+++|..+...+-++.++|++.+++++++. ++.++.+.+...+..++..++.+.+.|. ++++.++-|+.
T Consensus 87 ~gLks~~ITtng~vl~R~lp~lhkaglssiNiSldtl~~aKfa~~~rr~g~v~V~~~iq~a~~lgy~pvkvn~v~~k~~n 166 (323)
T KOG2876|consen 87 PGLKSIGITTNGLVLARLLPQLHKAGLSSINISLDTLVRAKFAKLTRRKGFVKVWASIQLAIELGYNPVKVNCVVMKGLN 166 (323)
T ss_pred cchhhhceeccchhhhhhhhHHHhhcccchhhhhhhhhHHHHHHHhhhccHHHHHHHHhHHhhhCCCCcceeeEEEeccC
Confidence 333 1267888888999999999999999999999 9999999999999999999999998876 46666777773
Q ss_pred CCHHHHHHHHHHHhcCCCCCCeeeeccceecCCCCCC
Q 022946 245 EAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQ 281 (289)
Q Consensus 245 et~ed~~~~l~~l~~l~~~~~~v~i~~~~p~pgTpl~ 281 (289)
+ +++.++...-+ . ++-.|.+..|+|..|-...
T Consensus 167 ~--~ev~Dfv~~tr-~--~p~DVrfIe~mpf~gn~~~ 198 (323)
T KOG2876|consen 167 E--DEVFDFVLLTR-M--RPLDVRFIEFMPFDGNKWN 198 (323)
T ss_pred C--CcccceeeecC-C--CCcceEEEEecccCCCccc
Confidence 2 23444433322 2 4667788888887776544
No 147
>PRK10076 pyruvate formate lyase II activase; Provisional
Probab=99.19 E-value=2.6e-09 Score=88.77 Aligned_cols=145 Identities=16% Similarity=0.142 Sum_probs=118.2
Q ss_pred CCCHHHHHHHHHHHHHc---CCcEEEEecccCCCCCCch-hHHHHHHHHHHHHhcCceE-EEeCCCCCHHHHHHHHHcCC
Q 022946 121 LMTKDAVMQAAQKAKEA---GSTRFCMGAAWRDTIGRKT-NFNQILEYVKDIRDMGMEV-CCTLGMLEKHQAIELKKAGL 195 (289)
Q Consensus 121 ~~~~eei~~~~~~~~~~---g~~~i~i~~~~~~~~ge~~-~~~~l~e~i~~ik~~~~~i-~~~~g~l~~e~l~~L~~aG~ 195 (289)
.+++|++++++..-..+ +..-|+|+| |||+ ..+.+.++++.+|+.|+.+ ..|+|..+.+.++.+... +
T Consensus 18 ~~t~eel~~~~~~~~~f~~~sggGVt~SG------GEPllq~~fl~~l~~~~k~~gi~~~leTnG~~~~~~~~~l~~~-~ 90 (213)
T PRK10076 18 DITLDALEREVMKDDIFFRTSGGGVTLSG------GEVLMQAEFATRFLQRLRLWGVSCAIETAGDAPASKLLPLAKL-C 90 (213)
T ss_pred ccCHHHHHHHHHhhhHhhcCCCCEEEEeC------chHHcCHHHHHHHHHHHHHcCCCEEEECCCCCCHHHHHHHHHh-c
Confidence 37999999998765432 334688876 6774 4456789999999888875 457999999999999886 9
Q ss_pred CeEecCCCch-HHHHhccCCCCCHHHHHHHHHHHHHcCCc--eeecEEeecCCCHHHHHHHHHHHhcCCCCCCeeeeccc
Q 022946 196 TAYNHNLDTS-REFYSKIITTRSYDERLETLKHVREAGIN--VCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINAL 272 (289)
Q Consensus 196 ~~v~i~let~-~~~~~~i~~~~~~~~~~~~i~~~~~~Gi~--v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~i~~~ 272 (289)
|.+.+.+.+. ++.|+++.+ .+.+.++++++.+.+.|.. +.+.+|.|+.++.+++..+.+++.++ +++.+.+.+|
T Consensus 91 D~~l~DiK~~d~~~~~~~tG-~~~~~il~nl~~l~~~g~~v~iR~~vIPg~nd~~e~i~~ia~~l~~l--~~~~~~llpy 167 (213)
T PRK10076 91 DEVLFDLKIMDATQARDVVK-MNLPRVLENLRLLVSEGVNVIPRLPLIPGFTLSRENMQQALDVLIPL--GIKQIHLLPF 167 (213)
T ss_pred CEEEEeeccCCHHHHHHHHC-CCHHHHHHHHHHHHhCCCcEEEEEEEECCCCCCHHHHHHHHHHHHHc--CCceEEEecC
Confidence 9999999999 899988865 5789999999999999976 56677889888999999999999998 4667777777
Q ss_pred eec
Q 022946 273 LAV 275 (289)
Q Consensus 273 ~p~ 275 (289)
-|.
T Consensus 168 h~~ 170 (213)
T PRK10076 168 HQY 170 (213)
T ss_pred Ccc
Confidence 764
No 148
>COG1244 Predicted Fe-S oxidoreductase [General function prediction only]
Probab=99.08 E-value=2.2e-08 Score=85.68 Aligned_cols=183 Identities=13% Similarity=0.161 Sum_probs=122.2
Q ss_pred ccCCCCc----CCCCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHH-cC---Cc-EEEEecccCCCCCCchhHHHHHHHH
Q 022946 95 KTGGCSE----DCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKE-AG---ST-RFCMGAAWRDTIGRKTNFNQILEYV 165 (289)
Q Consensus 95 ~t~~C~~----~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~-~g---~~-~i~i~~~~~~~~ge~~~~~~l~e~i 165 (289)
.|.||.. .|.+|++..... . ...+.|.+.+.+..+.. +. .+ .|.+..+|.+.-.+.-..+....++
T Consensus 53 rT~GC~w~~~~gC~MCgY~~d~~----~-~~vs~E~l~~qfd~~~~k~~~~~~~~~vkIFTSGSFLD~~EVP~e~R~~Il 127 (358)
T COG1244 53 RTRGCRWYREGGCYMCGYPADSA----G-EPVSEENLINQFDEAYSKYEGKFDEFVVKIFTSGSFLDPEEVPREARRYIL 127 (358)
T ss_pred ecCCcceeccCCcceeccccccC----C-CCCCHHHHHHHHHHHHHHhcccCCCceEEEEcccccCChhhCCHHHHHHHH
Confidence 3999963 599999875422 1 22688888888766653 21 22 2444322222211112223344444
Q ss_pred HHHHhcC-c---eEEEeCCCCCHHHHHHHHHc--CC-CeEecCCCch-HHHH-hccCCCCCHHHHHHHHHHHHHcCCcee
Q 022946 166 KDIRDMG-M---EVCCTLGMLEKHQAIELKKA--GL-TAYNHNLDTS-REFY-SKIITTRSYDERLETLKHVREAGINVC 236 (289)
Q Consensus 166 ~~ik~~~-~---~i~~~~g~l~~e~l~~L~~a--G~-~~v~i~let~-~~~~-~~i~~~~~~~~~~~~i~~~~~~Gi~v~ 236 (289)
+.+.+.+ + -+.+.+..+++|.++++.+. |. ..|.+||||+ +++. ..|+++.+|++.+++++.++++|+.+.
T Consensus 128 ~~is~~~~v~~vvvESRpE~I~eE~l~e~~~il~gk~~EvaIGLETanD~ire~sINKGftF~df~~A~~~ir~~g~~vk 207 (358)
T COG1244 128 ERISENDNVKEVVVESRPEFIREERLEEITEILEGKIVEVAIGLETANDKIREDSINKGFTFEDFVRAAEIIRNYGAKVK 207 (358)
T ss_pred HHHhhccceeEEEeecCchhcCHHHHHHHHHhhCCceEEEEEecccCcHHHHHHhhhcCCcHHHHHHHHHHHHHcCCcee
Confidence 5555432 2 24555778999999999988 54 4688999999 8887 677889999999999999999999999
Q ss_pred ecEEeec--CCCHHHHHHHHHHHhcCCCCCCeeeeccceecCCCCCCC
Q 022946 237 SGGIIGL--GEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQD 282 (289)
Q Consensus 237 ~~~i~Gl--get~ed~~~~l~~l~~l~~~~~~v~i~~~~p~pgTpl~~ 282 (289)
+.+++=. ---.+.+.+.+..+.....+.+.+++++-..++||-++.
T Consensus 208 tYlllKP~FlSE~eAI~D~i~Si~~~~~~~d~iSinptnVqKgTlvE~ 255 (358)
T COG1244 208 TYLLLKPPFLSEKEAIEDVISSIVAAKPGTDTISINPTNVQKGTLVEK 255 (358)
T ss_pred EEEEecccccChHHHHHHHHHHHHHhccCCCeEEecccccchhhHHHH
Confidence 8888744 222344555555555443357999999999999997543
No 149
>COG1533 SplB DNA repair photolyase [DNA replication, recombination, and repair]
Probab=99.08 E-value=1.3e-08 Score=88.57 Aligned_cols=169 Identities=21% Similarity=0.254 Sum_probs=104.6
Q ss_pred eeccccCCCCcCCCCCCCCCCCCCCCCCcCCCCHHH-HHHHHHHH-HHcCC--cEEEEecccCCCCCCchhHHHHHHHH-
Q 022946 91 LLSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDA-VMQAAQKA-KEAGS--TRFCMGAAWRDTIGRKTNFNQILEYV- 165 (289)
Q Consensus 91 ~i~~~t~~C~~~C~fC~~~~~~~~~~~~~~~~~~ee-i~~~~~~~-~~~g~--~~i~i~~~~~~~~ge~~~~~~l~e~i- 165 (289)
.+|. -.||.+.|.||+..............+.+++ +.+.++.- .+.+. ..|.+++ ..+++........+...+
T Consensus 32 ~inp-y~GC~h~C~YCYa~~~~~~~~~~~~~v~vk~n~~e~l~~el~~~~~k~~~i~is~-~TDpyqp~E~~~~ltR~il 109 (297)
T COG1533 32 TLNP-YRGCSHGCIYCYARPMHGYLPKSPTKVNVKENLLELLERELRKPGPKRTVIAISS-VTDPYQPIEKEYRLTRKIL 109 (297)
T ss_pred ecCC-cCCCCCCCceeecccccccccCCCceeeechhHHHHHHHHHhhccCCceEEEEec-CCCCCCcchHHHHHHHHHH
Confidence 3454 6799999999986543221111112234444 66666443 32233 3344443 445554212222333333
Q ss_pred HHHHhcCceEE-EeCCCC---CHHHHHHHHHcCCCeEecCCCch-HHHHhccCCC-CCHHHHHHHHHHHHHcCCceeecE
Q 022946 166 KDIRDMGMEVC-CTLGML---EKHQAIELKKAGLTAYNHNLDTS-REFYSKIITT-RSYDERLETLKHVREAGINVCSGG 239 (289)
Q Consensus 166 ~~ik~~~~~i~-~~~g~l---~~e~l~~L~~aG~~~v~i~let~-~~~~~~i~~~-~~~~~~~~~i~~~~~~Gi~v~~~~ 239 (289)
+-+...+..+. .|-..+ |-+.+..+..-+...|.+++.+. +++.+.+-|. .+.++++++++.+.++|+++...+
T Consensus 110 ei~~~~~~~v~I~TKS~lv~RDld~l~~~~~~~~v~V~~Sitt~d~~l~k~~EP~apsp~~Ri~al~~l~eaGi~~~v~v 189 (297)
T COG1533 110 EILLKYGFPVSIVTKSALVLRDLDLLLELAERGKVRVAVSITTLDEELAKILEPRAPSPEERLEALKELSEAGIPVGLFV 189 (297)
T ss_pred HHHHHcCCcEEEEECCcchhhhHHHHHhhhhccceEEEEEeecCcHHHHHhcCCCCcCHHHHHHHHHHHHHCCCeEEEEE
Confidence 33334455432 232223 55667777777777899999998 6788888775 479999999999999999987765
Q ss_pred Eeec-CCCHHHHHHHHHHHhcCC
Q 022946 240 IIGL-GEAEEDRVGLLHTLATLP 261 (289)
Q Consensus 240 i~Gl-get~ed~~~~l~~l~~l~ 261 (289)
-.=+ +.+++|+.+.+..+.+.+
T Consensus 190 ~PIiP~~~d~e~e~~l~~~~~ag 212 (297)
T COG1533 190 APIIPGLNDEELERILEAAAEAG 212 (297)
T ss_pred ecccCCCChHHHHHHHHHHHHcC
Confidence 4444 667799999999888773
No 150
>PF13353 Fer4_12: 4Fe-4S single cluster domain; PDB: 3C8F_A 3CB8_A 3T7V_A 2YX0_A 3CAN_A.
Probab=98.99 E-value=7.7e-10 Score=85.97 Aligned_cols=101 Identities=22% Similarity=0.337 Sum_probs=60.6
Q ss_pred cCCCCcCCCCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHHcCCcEEEEecccCCCCCCchh---HHHHHHHHHHHHhcC
Q 022946 96 TGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTN---FNQILEYVKDIRDMG 172 (289)
Q Consensus 96 t~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~~g~~~i~i~~~~~~~~ge~~~---~~~l~e~i~~ik~~~ 172 (289)
|++||++|.||....... ......++.+.+.+.++.+...++..|.+.| |||.. .+.+.++++.+++.+
T Consensus 12 t~~Cnl~C~yC~~~~~~~--~~~~~~~~~~~~~~ii~~~~~~~~~~i~l~G------GEPll~~~~~~l~~i~~~~k~~~ 83 (139)
T PF13353_consen 12 TNGCNLRCKYCFNSEIWK--FKRGKELSEEIIEEIIEELKNYGIKGIVLTG------GEPLLHENYDELLEILKYIKEKF 83 (139)
T ss_dssp EC--SB--TT-TTCCCS---TT-SEEC-HHHHHHHCHHHCCCCCCEEEEEC------STGGGHHSHHHHHHHHHHHHHTT
T ss_pred cCcccccCcCcCCcccCc--ccccccccchhhhhhhhHHhcCCceEEEEcC------CCeeeeccHhHHHHHHHHHHHhC
Confidence 788999999998754322 1223336777777777877788899999887 56766 899999999999665
Q ss_pred c--eEEEeCCCCCHHHHHHHHHcCCCeEecCCCc
Q 022946 173 M--EVCCTLGMLEKHQAIELKKAGLTAYNHNLDT 204 (289)
Q Consensus 173 ~--~i~~~~g~l~~e~l~~L~~aG~~~v~i~let 204 (289)
. .+..++|....+...++....++.+.++++.
T Consensus 84 ~~~~~~~tng~~~~~~~~~~~~~~~~~~~vsvd~ 117 (139)
T PF13353_consen 84 PKKIIILTNGYTLDELLDELIEELLDEIDVSVDG 117 (139)
T ss_dssp -SEEEEEETT--HHHHHHHHHHHHHHTESEEEE-
T ss_pred CCCeEEEECCCchhHHHhHHHHhccCccEEEEEE
Confidence 5 3567788766666543333334444444444
No 151
>COG1313 PflX Uncharacterized Fe-S protein PflX, homolog of pyruvate formate lyase activating proteins [General function prediction only]
Probab=98.84 E-value=9.2e-08 Score=80.67 Aligned_cols=153 Identities=14% Similarity=0.161 Sum_probs=109.7
Q ss_pred CCCCcCCCCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHHcCCcEEEEecccCCCCCCchhHHHHHHHHHHHHhcCce-E
Q 022946 97 GGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMGME-V 175 (289)
Q Consensus 97 ~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~~g~~~i~i~~~~~~~~ge~~~~~~l~e~i~~ik~~~~~-i 175 (289)
.||+++|.||..+..+..+ .....+++++.+.+....++|++.|-++||+.. .....++++++.+... ++ +
T Consensus 126 sgCnfrCVfCQNwdISq~~--~g~~v~~e~La~i~~~~~~~GakNvN~Vgg~Pt-----p~lp~Ile~l~~~~~~-iPvv 197 (335)
T COG1313 126 SGCNFRCVFCQNWDISQFG--IGKEVTPEDLAEIILELRRHGAKNVNFVGGDPT-----PHLPFILEALRYASEN-IPVV 197 (335)
T ss_pred cCcceEEEEecCccccccC--CCeEecHHHHHHHHHHHHHhcCcceeecCCCCC-----CchHHHHHHHHHHhcC-CCEE
Confidence 5999999999876543322 334479999999999999999999999885422 2668899998877644 44 5
Q ss_pred EEeCCCCCHHHHHHHHHcCCCeEecCCCch-HHHHhccCCCC-CHHHHHHHHHHHHHc--CCceeecEEeecCCCHHHHH
Q 022946 176 CCTLGMLEKHQAIELKKAGLTAYNHNLDTS-REFYSKIITTR-SYDERLETLKHVREA--GINVCSGGIIGLGEAEEDRV 251 (289)
Q Consensus 176 ~~~~g~l~~e~l~~L~~aG~~~v~i~let~-~~~~~~i~~~~-~~~~~~~~i~~~~~~--Gi~v~~~~i~Glget~ed~~ 251 (289)
..+++..+.|.++.|... +|.+.-.+.-+ ++--.+..+-. -++-+.+++..+.+. |+-+..-++.|+-|. --.
T Consensus 198 wNSnmY~s~E~l~lL~gv-VDiyL~DfKYgNdeca~kySkvp~Y~eVv~rn~~~~~~~~g~~iiRHLVlPghlec--CTk 274 (335)
T COG1313 198 WNSNMYMSEETLKLLDGV-VDIYLPDFKYGNDECAEKYSKVPNYWEVVTRNILEAKEQVGGLIIRHLVLPGHLEC--CTK 274 (335)
T ss_pred EecCCccCHHHHHHhhcc-ceeeecccccCCHHHHHHhhcCCchHHHHHHHHHHHHHhcCceEEEEEecCCchhh--ccH
Confidence 677899999999988855 56555567666 66666666544 467778888888775 466777777777322 134
Q ss_pred HHHHHHhcC
Q 022946 252 GLLHTLATL 260 (289)
Q Consensus 252 ~~l~~l~~l 260 (289)
..++|+.+.
T Consensus 275 pI~~wiae~ 283 (335)
T COG1313 275 PILRWIAEN 283 (335)
T ss_pred HHHHHHHHh
Confidence 566777765
No 152
>PF13394 Fer4_14: 4Fe-4S single cluster domain; PDB: 1TV8_B 1TV7_A 2FB2_A 2FB3_A.
Probab=98.65 E-value=7.7e-08 Score=72.63 Aligned_cols=82 Identities=23% Similarity=0.455 Sum_probs=45.8
Q ss_pred cCCCCcCCCCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHHcCC--cEEEEecccCCCCCCchh---HHHHHHHHHHHHh
Q 022946 96 TGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAGS--TRFCMGAAWRDTIGRKTN---FNQILEYVKDIRD 170 (289)
Q Consensus 96 t~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~~g~--~~i~i~~~~~~~~ge~~~---~~~l~e~i~~ik~ 170 (289)
|.+||++|.||.....+.. .....++.+++.+.++.+.+.+. ..|.|+| |||.. .+.+.++++.+++
T Consensus 5 t~~Cnl~C~~C~~~~~~~~--~~~~~~~~~~~~~~i~~~~~~~~~~~~v~~~G------GEPll~~~~~~l~~~i~~~~~ 76 (119)
T PF13394_consen 5 TSGCNLRCSYCYNKSSWSP--KKGEEMSIEELEEIIDELKEKGFRPSTVVFTG------GEPLLYLNPEDLIELIEYLKE 76 (119)
T ss_dssp -S--S---TTTS-TTTSST---GGGS--HHHHHHHHHHHHHTT----EEEEES------SSGGGSTTHHHHHHHHCTSTT
T ss_pred cCCcCCCCccCCcCccCCC--ccCCcccHhHHHHHHHHHHhcCCceEEEEEEC------CCCccccCHHHHHHHHHHHHh
Confidence 8999999999997532221 23344788999999987777765 4577776 56653 3778899988886
Q ss_pred cC--ceE-EEeCCCCCHH
Q 022946 171 MG--MEV-CCTLGMLEKH 185 (289)
Q Consensus 171 ~~--~~i-~~~~g~l~~e 185 (289)
.+ +.+ ..|+|.+..+
T Consensus 77 ~~~~~~i~i~TNg~~~~~ 94 (119)
T PF13394_consen 77 RGPEIKIRIETNGTLPTE 94 (119)
T ss_dssp -----EEEEEE-STTHHH
T ss_pred hCCCceEEEEeCCeeccc
Confidence 65 554 4567876533
No 153
>TIGR02826 RNR_activ_nrdG3 anaerobic ribonucleoside-triphosphate reductase activating protein. Members of this family represent a set of proteins related to, yet architecturally different from, the activating protein for the glycine radical-containing, oxygen-sensitive ribonucleoside-triphosphate reductase (RNR) as described in model TIGR02491. Members of this family are found paired with members of a similarly divergent set of anaerobic ribonucleoside-triphosphate reductases. Identification of this protein as an RNR activitating protein is partly from pairing with a candidate RNR. It is further supported by our finding that upstream of these operons are examples of a conserved regulatory element (described Rodionov and Gelfand) that is found in nearly all bacteria and that occurs specifically upstream of operons for all three classes of RNR genes.
Probab=98.57 E-value=1e-06 Score=68.88 Aligned_cols=96 Identities=18% Similarity=0.304 Sum_probs=65.5
Q ss_pred cCCCCcCCCCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHHcCCcEEEEecccCCCCCCchhHHHHHHHHHHHHhcCceE
Q 022946 96 TGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMGMEV 175 (289)
Q Consensus 96 t~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~~g~~~i~i~~~~~~~~ge~~~~~~l~e~i~~ik~~~~~i 175 (289)
..|||++|.||..+..+.. .....++.+++.+.++.... .+..|+|+| || ...+.+.++++.+++.|+.+
T Consensus 22 l~GCnlrC~~C~n~~~~~~--~~g~~lt~eel~~~I~~~~~-~~~gVt~SG------GE-l~~~~l~~ll~~lk~~Gl~i 91 (147)
T TIGR02826 22 ITGCPLGCKGCHSPESWHL--SEGTKLTPEYLTKTLDKYRS-LISCVLFLG------GE-WNREALLSLLKIFKEKGLKT 91 (147)
T ss_pred eCCCCCCCCCCCChHHcCC--CCCcCCCHHHHHHHHHHhCC-CCCEEEEec------hh-cCHHHHHHHHHHHHHCCCCE
Confidence 6699999999987643221 11234899999999877542 356788887 55 56688999999999888876
Q ss_pred EEeCCCCCHHHHHHHHHcCCCeEecCC
Q 022946 176 CCTLGMLEKHQAIELKKAGLTAYNHNL 202 (289)
Q Consensus 176 ~~~~g~l~~e~l~~L~~aG~~~v~i~l 202 (289)
....|...++..+++.+. +|.+..|.
T Consensus 92 ~l~Tg~~~~~~~~~il~~-iD~l~~g~ 117 (147)
T TIGR02826 92 CLYTGLEPKDIPLELVQH-LDYLKTGR 117 (147)
T ss_pred EEECCCCCHHHHHHHHHh-CCEEEECh
Confidence 443344445555555544 67666554
No 154
>KOG2535 consensus RNA polymerase II elongator complex, subunit ELP3/histone acetyltransferase [Chromatin structure and dynamics; Transcription]
Probab=98.54 E-value=1.9e-06 Score=74.35 Aligned_cols=111 Identities=15% Similarity=0.209 Sum_probs=90.0
Q ss_pred CceEEEeCCCCCHHHHHHHHHcCCCeEecCCCch-HHHHhccCCCCCHHHHHHHHHHHHHcCCceeecEEeec-CC-CHH
Q 022946 172 GMEVCCTLGMLEKHQAIELKKAGLTAYNHNLDTS-REFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGL-GE-AEE 248 (289)
Q Consensus 172 ~~~i~~~~g~l~~e~l~~L~~aG~~~v~i~let~-~~~~~~i~~~~~~~~~~~~i~~~~~~Gi~v~~~~i~Gl-ge-t~e 248 (289)
|+.+.+.+..-....+..|...||+++.+|+++. +++-+.-+++++...+.+....++++|++|.+++|..+ .- -+.
T Consensus 224 GiTIETRPDyC~~~Hl~~ML~YGCTRlEiGVQS~YEDVARDTNRGHTV~aVce~F~laKDaG~KvV~HMMPdLPNVg~eR 303 (554)
T KOG2535|consen 224 GITIETRPDYCLKRHLSDMLTYGCTRLEIGVQSVYEDVARDTNRGHTVKAVCESFHLAKDAGFKVVAHMMPDLPNVGMER 303 (554)
T ss_pred eEEeecCcccchhhhHHHHHhcCCceEEeccchhHHHhhhcccCCccHHHHHHHhhhhhccCceeehhhCCCCCCCchhh
Confidence 4445555666667778999999999999999999 99999999999999999999999999999999999877 32 334
Q ss_pred HHHHHHHHHhcCCCCCCeeeeccceecCCCCCCC
Q 022946 249 DRVGLLHTLATLPTHPESVPINALLAVKGTPLQD 282 (289)
Q Consensus 249 d~~~~l~~l~~l~~~~~~v~i~~~~p~pgTpl~~ 282 (289)
|+..+.++...-.-.++.+.+++-....||-|+.
T Consensus 304 DieqF~E~FenP~FR~DGLKiYPTLVIrGTGLyE 337 (554)
T KOG2535|consen 304 DIEQFKEYFENPAFRPDGLKIYPTLVIRGTGLYE 337 (554)
T ss_pred hHHHHHHHhcCcCcCCCcceecceEEEecccHHH
Confidence 6666666665422257888899999999998765
No 155
>COG1509 KamA Lysine 2,3-aminomutase [Amino acid transport and metabolism]
Probab=98.54 E-value=2.6e-06 Score=74.39 Aligned_cols=173 Identities=16% Similarity=0.151 Sum_probs=106.7
Q ss_pred eeccccCCCCcCCCCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHHcC-CcEEEEecccCCCCCCchhHHHHHHHHHHHH
Q 022946 91 LLSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAG-STRFCMGAAWRDTIGRKTNFNQILEYVKDIR 169 (289)
Q Consensus 91 ~i~~~t~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~~g-~~~i~i~~~~~~~~ge~~~~~~l~e~i~~ik 169 (289)
++.. |++|+..|+||.-..... .... . ++.+++.+.+..+.... +.+|.++||+. ....+..++++++.+++|.
T Consensus 114 Lll~-t~~C~vyCRyCfRr~~~~-~~~~-~-~~~~~~~~al~YIa~hPeI~eVllSGGDP-L~ls~~~L~~ll~~L~~Ip 188 (369)
T COG1509 114 LLLV-TGVCAVYCRYCFRRRFVG-QDNQ-G-FNKEEWDKALDYIAAHPEIREVLLSGGDP-LSLSDKKLEWLLKRLRAIP 188 (369)
T ss_pred EEEe-cCcccceeeecccccccc-cccc-c-CCHHHHHHHHHHHHcCchhheEEecCCCc-cccCHHHHHHHHHHHhcCC
Confidence 4444 999999999997543221 1111 2 58888888888887754 78888887653 3343444455555555444
Q ss_pred hc-CceEEE-----eCCCCCHHHHHHHHHcCCC-eEecCCCchHHHHhccCCCCCHHHHHHHHHHHHHcCCce-e-ecEE
Q 022946 170 DM-GMEVCC-----TLGMLEKHQAIELKKAGLT-AYNHNLDTSREFYSKIITTRSYDERLETLKHVREAGINV-C-SGGI 240 (289)
Q Consensus 170 ~~-~~~i~~-----~~g~l~~e~l~~L~~aG~~-~v~i~let~~~~~~~i~~~~~~~~~~~~i~~~~~~Gi~v-~-~~~i 240 (289)
.. .+.+.+ .+.-++++.++.|++.+.. ++...++...| -.....++++.++++|+.+ + +-++
T Consensus 189 Hv~iiRi~TR~pvv~P~RIt~~L~~~l~~~~~~v~~~tH~NHp~E---------it~e~~~A~~~L~~aGv~l~NQsVLL 259 (369)
T COG1509 189 HVKIIRIGTRLPVVLPQRITDELCEILGKSRKPVWLVTHFNHPNE---------ITPEAREACAKLRDAGVPLLNQSVLL 259 (369)
T ss_pred ceeEEEeecccceechhhccHHHHHHHhccCceEEEEcccCChhh---------cCHHHHHHHHHHHHcCceeecchhee
Confidence 22 233332 2344678888888876542 22233433321 2356788999999999974 3 3455
Q ss_pred eecCCCHHHHHHHHHHHhcCCCCCCeeeeccceecCCCC
Q 022946 241 IGLGEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTP 279 (289)
Q Consensus 241 ~Glget~ed~~~~l~~l~~l~~~~~~v~i~~~~p~pgTp 279 (289)
-|..++.+-+.++++.|.+.+ +.--.++..=+.+|+.
T Consensus 260 rGVND~~evl~~L~~~L~~~g--V~PYYl~~~D~~~G~~ 296 (369)
T COG1509 260 RGVNDDPEVLKELSRALFDAG--VKPYYLHQLDLVQGAA 296 (369)
T ss_pred cccCCCHHHHHHHHHHHHHcC--CcceEEeccCccCCcc
Confidence 688999999899999988874 3333344444455554
No 156
>COG1625 Fe-S oxidoreductase, related to NifB/MoaA family [Energy production and conversion]
Probab=98.47 E-value=1.4e-06 Score=77.47 Aligned_cols=173 Identities=16% Similarity=0.167 Sum_probs=122.1
Q ss_pred cCCCCcC---CCCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHHcCCcE-----EEEecccCCCCCCchhHHHHHHHHHH
Q 022946 96 TGGCSED---CSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAGSTR-----FCMGAAWRDTIGRKTNFNQILEYVKD 167 (289)
Q Consensus 96 t~~C~~~---C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~~g~~~-----i~i~~~~~~~~ge~~~~~~l~e~i~~ 167 (289)
..-|..- |.||+....-. .....++..|.++... +.|... +..+++ +....+.++.+.++.
T Consensus 34 ~~~c~~~~~~C~~cy~~v~~~----~~~~~~~~~v~~e~~~--~lg~~~e~~~~~~~~~~-----~d~~c~p~le~~~~r 102 (414)
T COG1625 34 CKDCIPYRFGCDDCYLSVNEL----DTGFIPPLMVEKEPDE--DLGLEFEEVLGAKQCGN-----GDTFCYPDLEPRGRR 102 (414)
T ss_pred CCcCCCccccccceeeEEecc----cCCCCCHhHhhccccc--ccccccccccceeecCC-----CCcccCcchhhhhhH
Confidence 4456554 99998764211 1133566676666542 233222 222321 233466778888877
Q ss_pred HHhcC----ceE--EEeCCCCCHHHHHHHHHcCCCeEecCCCch-HHHHhccCCCCCHHHHHHHHHHHHHcCCceeecEE
Q 022946 168 IRDMG----MEV--CCTLGMLEKHQAIELKKAGLTAYNHNLDTS-REFYSKIITTRSYDERLETLKHVREAGINVCSGGI 240 (289)
Q Consensus 168 ik~~~----~~i--~~~~g~l~~e~l~~L~~aG~~~v~i~let~-~~~~~~i~~~~~~~~~~~~i~~~~~~Gi~v~~~~i 240 (289)
.+.++ +.. ...+|..+.+..+.+.++|++-+++++.|. +++++++.+....++.++.++++.+.++.+.+.++
T Consensus 103 ~~~~~~d~~~rL~~tsG~~~~lt~~~~~i~~~gvdev~~SVhtT~p~lR~klm~n~~A~~~le~L~~f~~~~~~v~a~iV 182 (414)
T COG1625 103 ARLYYKDDDIRLSFTSGSGFTLTNRAERIIDAGVDEVYFSVHTTNPELRAKLMKNPNAEQLLELLRRFAERCIEVHAQIV 182 (414)
T ss_pred HHhhcCCccceeeeeeccceeccchHHHHHHcCCCeeEEEEeeCCHHHHHHHhcCCcHHHHHHHHHHHHHhhhheeeEEE
Confidence 76544 333 233566677788889999999999999999 99999999999999999999999999999988887
Q ss_pred eecCCC-HHHHHHHHHHHhcCCCCCCeeeeccceecCCCCCC
Q 022946 241 IGLGEA-EEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQ 281 (289)
Q Consensus 241 ~Glget-~ed~~~~l~~l~~l~~~~~~v~i~~~~p~pgTpl~ 281 (289)
+=-|-+ -+++.++++.|.++ ++..+.++.+.|.--|.+.
T Consensus 183 l~PGvNdge~L~kT~~dL~~~--g~~~~~~~~~~pvGlt~~n 222 (414)
T COG1625 183 LCPGVNDGEELEKTLEDLEEW--GAHEVILMRVVPVGLTRYN 222 (414)
T ss_pred EcCCcCcHHHHHHHHHHHHHh--CcCceeEEEeecceeeecC
Confidence 744555 68899999999999 5677777766776655443
No 157
>TIGR02491 NrdG anaerobic ribonucleoside-triphosphate reductase activating protein. This enzyme is a member of the radical-SAM family (pfam04055) and utilizes S-adenosyl methionine, an iron-sulfur cluster and a reductant (dihydroflavodoxin ) to produce a glycine-centered radical in the class III (anaerobic) ribonucleotide triphosphate reductase (NrdD, TIGR02487). The two components form an alpha-2/beta-2 heterodimer.
Probab=98.40 E-value=4.9e-06 Score=65.80 Aligned_cols=85 Identities=16% Similarity=0.290 Sum_probs=56.7
Q ss_pred cCCCCcCCCCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHHcC-CcEEEEecccCCCCCCch---hHHHHHHHHHHHHhc
Q 022946 96 TGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAG-STRFCMGAAWRDTIGRKT---NFNQILEYVKDIRDM 171 (289)
Q Consensus 96 t~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~~g-~~~i~i~~~~~~~~ge~~---~~~~l~e~i~~ik~~ 171 (289)
..|||++|.||..+..+.. .....++.+++.+.++.+.+.+ +..|+|.| |||. .++.+.++++.+++.
T Consensus 22 ~~gCnl~C~~C~n~~~~~~--~~g~~~~~~~~~~i~~~l~~~~~~~gVt~sG------GEPllq~~~~~l~~ll~~~k~~ 93 (154)
T TIGR02491 22 VAGCKHHCEGCFNKETWNF--NGGKEFTEALEKEIIRDLNDNPLIDGLTLSG------GDPLYPRNVEELIELVKKIKAE 93 (154)
T ss_pred ECCCCCCCcCCCcccccCC--CCCCcCCHHHHHHHHHHHHhcCCcCeEEEeC------hhhCCCCCHHHHHHHHHHHHHh
Confidence 4689999999987643221 1223478666666666666654 56788876 5564 347899999998854
Q ss_pred -Cce-EEEeCCCCCHHHHH
Q 022946 172 -GME-VCCTLGMLEKHQAI 188 (289)
Q Consensus 172 -~~~-i~~~~g~l~~e~l~ 188 (289)
+.. +..++|...++.++
T Consensus 94 ~~~~~~~~~tG~~~~~~~~ 112 (154)
T TIGR02491 94 FPEKDIWLWTGYTWEEILE 112 (154)
T ss_pred CCCCCEEEeeCccHHHHhc
Confidence 554 66678876665553
No 158
>PRK11121 nrdG anaerobic ribonucleotide reductase-activating protein; Provisional
Probab=98.36 E-value=4.7e-06 Score=65.87 Aligned_cols=84 Identities=18% Similarity=0.323 Sum_probs=52.4
Q ss_pred cCCCCcCCCCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHHcCC--cEEEEecccCCCCCCch---hHHHHHHHHHHHHh
Q 022946 96 TGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAGS--TRFCMGAAWRDTIGRKT---NFNQILEYVKDIRD 170 (289)
Q Consensus 96 t~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~~g~--~~i~i~~~~~~~~ge~~---~~~~l~e~i~~ik~ 170 (289)
..|||++|.||..+..+.. .....++.+.+.+.++.+...+. ..|+|.| |||. ..+.+.++++.+++
T Consensus 23 ~~GCnl~C~~C~n~~~~~~--~~g~~~~~~~~~~il~~~~~~~~~~~gvt~sG------GEPl~~~~~~~l~~l~~~~k~ 94 (154)
T PRK11121 23 VSGCVHQCPGCYNKSTWRL--NSGHPFTKEMEDQIIADLNDTRIKRQGLSLSG------GDPLHPQNVPDILKLVQRVKA 94 (154)
T ss_pred cCCCCCcCcCCCChhhccC--CCCcccCHHHHHHHHHHHHHhCCCCCcEEEEC------CCccchhhHHHHHHHHHHHHH
Confidence 5799999999987643221 11222454444444555544443 5678876 4564 45788888888874
Q ss_pred c--CceEEEeCCCCCHHHH
Q 022946 171 M--GMEVCCTLGMLEKHQA 187 (289)
Q Consensus 171 ~--~~~i~~~~g~l~~e~l 187 (289)
. +..+.+++|...++..
T Consensus 95 ~~~~~~i~~~tGy~~eel~ 113 (154)
T PRK11121 95 ECPGKDIWVWTGYKLDELN 113 (154)
T ss_pred HCCCCCEEEecCCCHHHHH
Confidence 3 4667778887755543
No 159
>COG1964 Predicted Fe-S oxidoreductases [General function prediction only]
Probab=98.30 E-value=2.1e-05 Score=70.49 Aligned_cols=142 Identities=18% Similarity=0.163 Sum_probs=102.3
Q ss_pred CCHHHHHHHHHHHHHcC---CcEEEEecccCCCCCCchhHHHHHHHHHHHHhcCce-EE-EeCCC---CCHHHHHHHHHc
Q 022946 122 MTKDAVMQAAQKAKEAG---STRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMGME-VC-CTLGM---LEKHQAIELKKA 193 (289)
Q Consensus 122 ~~~eei~~~~~~~~~~g---~~~i~i~~~~~~~~ge~~~~~~l~e~i~~ik~~~~~-i~-~~~g~---l~~e~l~~L~~a 193 (289)
-+.|+|.+.++.++... ...|-+. +|||+..+++.++++.+++.|+. +. .+||. .+.+..+.|++|
T Consensus 91 pt~eqi~~Ml~~lk~e~p~~~~aIq~t------GGEPTvr~DL~eiv~~a~e~g~~hVqinTnGirlA~~~~~~~~l~~a 164 (475)
T COG1964 91 PTLEQIREMLRNLKKEHPVGANAVQFT------GGEPTLRDDLIEIIKIAREEGYDHVQLNTNGIRLAFDPEYVKKLREA 164 (475)
T ss_pred CCHHHHHHHHHHHHhcCCCCCceeEec------CCCccchhhHHHHHHHHhhcCccEEEEccCceeeccCHHHHHHHHhc
Confidence 58899999998887642 3344333 48899999999999999988774 43 44664 578999999999
Q ss_pred CCCeEecCCCch-HHHHhccCCCCCHHHHHHHHHHHHHcCCceeecEEeec--CCCHHHHHHHHHHHhcCCCCCCeeeec
Q 022946 194 GLTAYNHNLDTS-REFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGL--GEAEEDRVGLLHTLATLPTHPESVPIN 270 (289)
Q Consensus 194 G~~~v~i~let~-~~~~~~i~~~~~~~~~~~~i~~~~~~Gi~v~~~~i~Gl--get~ed~~~~l~~l~~l~~~~~~v~i~ 270 (289)
|+..|+++.++. ++.+.++ .-++..+++.++++|+... .++.++ |.++.++-+.+++.... ++.|.--
T Consensus 165 g~~tvYlsFDG~~e~~~~~~-----~~eIk~alen~r~~g~~sv-VLVptl~rgvNd~~lG~iirfa~~n---~dvVrgV 235 (475)
T COG1964 165 GVNTVYLSFDGVTPKTNWKN-----HWEIKQALENCRKAGLPSV-VLVPTLIRGVNDHELGAIIRFALNN---IDVVRGV 235 (475)
T ss_pred CCcEEEEecCCCCCCchhhH-----hhhhHHHHHHHHhcCCCcE-EEEeehhcccChHHHHHHHHHHHhc---ccccccc
Confidence 999999999998 8876665 4455559999999998611 123334 66777788888887654 4444444
Q ss_pred cceecCCC
Q 022946 271 ALLAVKGT 278 (289)
Q Consensus 271 ~~~p~pgT 278 (289)
.|.|+.-|
T Consensus 236 nfQPVslt 243 (475)
T COG1964 236 NFQPVSLT 243 (475)
T ss_pred ceEEEEEe
Confidence 45554433
No 160
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=98.29 E-value=4.2e-05 Score=65.95 Aligned_cols=142 Identities=14% Similarity=0.163 Sum_probs=104.7
Q ss_pred CCCCHHHHHHHHHHHHHcCCcEEEEecccCCCCCCchhHHHHHHHHHHHHhcC--ceE--EEeCCCCCHHHHHHHHHcCC
Q 022946 120 KLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMG--MEV--CCTLGMLEKHQAIELKKAGL 195 (289)
Q Consensus 120 ~~~~~eei~~~~~~~~~~g~~~i~i~~~~~~~~ge~~~~~~l~e~i~~ik~~~--~~i--~~~~g~l~~e~l~~L~~aG~ 195 (289)
..++.++.++.++.+.+.|++.|.++++...... | ..+...++++.+++.+ ..+ .++++ .+.++.++++|+
T Consensus 14 ~~~s~e~~~~i~~~L~~~GV~~IEvg~~~~~~~~-p-~~~~~~~~i~~l~~~~~~~~~~~l~~~~---~~~i~~a~~~g~ 88 (265)
T cd03174 14 ATFSTEDKLEIAEALDEAGVDSIEVGSGASPKAV-P-QMEDDWEVLRAIRKLVPNVKLQALVRNR---EKGIERALEAGV 88 (265)
T ss_pred CCCCHHHHHHHHHHHHHcCCCEEEeccCcCcccc-c-cCCCHHHHHHHHHhccCCcEEEEEccCc---hhhHHHHHhCCc
Confidence 3369999999999999999999998764322111 1 2245566666666433 443 33344 788999999999
Q ss_pred CeEecCCCchHHHHhcc--CCC--CCHHHHHHHHHHHHHcCCceeecEEeecC--CCHHHHHHHHHHHhcCCCCCCeeee
Q 022946 196 TAYNHNLDTSREFYSKI--ITT--RSYDERLETLKHVREAGINVCSGGIIGLG--EAEEDRVGLLHTLATLPTHPESVPI 269 (289)
Q Consensus 196 ~~v~i~let~~~~~~~i--~~~--~~~~~~~~~i~~~~~~Gi~v~~~~i~Glg--et~ed~~~~l~~l~~l~~~~~~v~i 269 (289)
+.|.+.+.+.+ .+... +++ ..++..++.++.+++.|+.+...++.-.+ .+++++.+.++.+.++ +++.+.+
T Consensus 89 ~~i~i~~~~s~-~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~~~~~~~~~~~~~l~~~~~~~~~~--g~~~i~l 165 (265)
T cd03174 89 DEVRIFDSASE-THSRKNLNKSREEDLENAEEAIEAAKEAGLEVEGSLEDAFGCKTDPEYVLEVAKALEEA--GADEISL 165 (265)
T ss_pred CEEEEEEecCH-HHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEeecCCCCCHHHHHHHHHHHHHc--CCCEEEe
Confidence 99999887763 33332 333 26899999999999999998888866667 9999999999999999 5666654
No 161
>COG0602 NrdG Organic radical activating enzymes [Posttranslational modification, protein turnover, chaperones]
Probab=98.13 E-value=9.1e-06 Score=67.58 Aligned_cols=83 Identities=17% Similarity=0.318 Sum_probs=56.6
Q ss_pred cCCCCcCCCCCCCCCCCCCC-CCCcCCCCHHHHHHHHHHHHHcCCcEEEEecccCCCCCCchhHHHHHHHHHHHHhcCce
Q 022946 96 TGGCSEDCSYCPQSSRYDTG-VKGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMGME 174 (289)
Q Consensus 96 t~~C~~~C~fC~~~~~~~~~-~~~~~~~~~eei~~~~~~~~~~g~~~i~i~~~~~~~~ge~~~~~~l~e~i~~ik~~~~~ 174 (289)
+.|||++|.+|.....+... ...+..++.++|++.++... .+...|+++| |||...+.+.++++.+++.|++
T Consensus 29 ~~GC~l~C~~Cdt~~t~~~~~~~~~~~~~~~~I~~~i~~~~-~~~~~V~lTG------GEP~~~~~l~~Ll~~l~~~g~~ 101 (212)
T COG0602 29 FAGCNLRCPGCDTKYTWDFNYGKPGTPMSADEILADIKSLG-YKARGVSLTG------GEPLLQPNLLELLELLKRLGFR 101 (212)
T ss_pred cCCCCCCCCCCCChhhhcccccCCCCccCHHHHHHHHHhcC-CCcceEEEeC------CcCCCcccHHHHHHHHHhCCce
Confidence 67999999999864222111 12445589999998887542 2344788877 6786667888999988877877
Q ss_pred EEE-eCCCCCHH
Q 022946 175 VCC-TLGMLEKH 185 (289)
Q Consensus 175 i~~-~~g~l~~e 185 (289)
+.. ++|.+...
T Consensus 102 ~~lETngti~~~ 113 (212)
T COG0602 102 IALETNGTIPVW 113 (212)
T ss_pred EEecCCCCcccc
Confidence 644 45655443
No 162
>TIGR03279 cyano_FeS_chp putative FeS-containing Cyanobacterial-specific oxidoreductase. Members of this protein family are predicted FeS-containing oxidoreductases of unknown function, apparently restricted to and universal across the Cyanobacteria. The high trusted cutoff score for this model, 700 bits, excludes homologs from other lineages. This exclusion seems justified because a significant number of sequence positions are simultaneously unique to and invariant across the Cyanobacteria, suggesting a specialized, conserved function, perhaps related to photosynthesis. A distantly related protein family, TIGR03278, in universal in and restricted to archaeal methanogens, and may be linked to methanogenesis.
Probab=97.98 E-value=6.8e-05 Score=68.00 Aligned_cols=104 Identities=16% Similarity=0.192 Sum_probs=80.3
Q ss_pred eCCCCCHHHHHHHHHcCCCeEecCCCch-HHHHhccCCCCCHHHHHHHHHHHHHcCCceeecEEe--ecCCCHHHHHHHH
Q 022946 178 TLGMLEKHQAIELKKAGLTAYNHNLDTS-REFYSKIITTRSYDERLETLKHVREAGINVCSGGII--GLGEAEEDRVGLL 254 (289)
Q Consensus 178 ~~g~l~~e~l~~L~~aG~~~v~i~let~-~~~~~~i~~~~~~~~~~~~i~~~~~~Gi~v~~~~i~--Glget~ed~~~~l 254 (289)
|...++++.+++..+.++.-+++|+.+. ++.+.++.+....+++++.++++.++||.+.+.+++ |+.+ .+++.+++
T Consensus 122 TLTNl~~~d~~RI~~~~lspl~iSVhat~p~lR~~ll~n~~a~~il~~l~~l~~~~I~~h~qiVlcPGiND-g~~L~~Ti 200 (433)
T TIGR03279 122 TLTNLPPAEWQRIEQLRLSPLYVSVHATEPSLRARLLKNPRAGLILEQLKWFQERRLQLHAQVVVCPGIND-GKHLERTL 200 (433)
T ss_pred eecCCCHHHHHHHHHcCCCCEEEEEecCCHHHHHHHhCCCCHHHHHHHHHHHHHcCCeEEEEEEEcCCcCC-HHHHHHHH
Confidence 3445889999999999999999999999 999999999889999999999999999998877665 5432 36789999
Q ss_pred HHHhcCCC-CCCeeeeccceecCCCCCCC
Q 022946 255 HTLATLPT-HPESVPINALLAVKGTPLQD 282 (289)
Q Consensus 255 ~~l~~l~~-~~~~v~i~~~~p~pgTpl~~ 282 (289)
..|.+++. ....|.=...+|..=|.+..
T Consensus 201 ~dL~~~~~~~~P~v~S~avVPVGlTk~R~ 229 (433)
T TIGR03279 201 RDLAQFHDGDWPTVLSVAVVPVGLTRFRP 229 (433)
T ss_pred HHHHhhcccCCCceeEEEEEccccccCCC
Confidence 99988721 01222223346666665544
No 163
>cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain. Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th
Probab=97.73 E-value=0.0021 Score=55.32 Aligned_cols=138 Identities=14% Similarity=0.110 Sum_probs=94.6
Q ss_pred CCCCHHHHHHHHHHHHHcCCcEEEEecccCCCCCCchhHHHHHHHHHHHHhcC--ceEEEeCCCCCHHHHHHHHHcCCCe
Q 022946 120 KLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMG--MEVCCTLGMLEKHQAIELKKAGLTA 197 (289)
Q Consensus 120 ~~~~~eei~~~~~~~~~~g~~~i~i~~~~~~~~ge~~~~~~l~e~i~~ik~~~--~~i~~~~g~l~~e~l~~L~~aG~~~ 197 (289)
..++.++.++.++.+.+.|++.|-++. |... +...+.++.+...+ ..+ ......+.+.++...++|++.
T Consensus 17 ~~~s~~~k~~i~~~L~~~Gv~~IEvG~----P~~~----~~~~~~~~~l~~~~~~~~v-~~~~r~~~~di~~a~~~g~~~ 87 (262)
T cd07948 17 AFFDTEDKIEIAKALDAFGVDYIELTS----PAAS----PQSRADCEAIAKLGLKAKI-LTHIRCHMDDARIAVETGVDG 87 (262)
T ss_pred CCCCHHHHHHHHHHHHHcCCCEEEEEC----CCCC----HHHHHHHHHHHhCCCCCcE-EEEecCCHHHHHHHHHcCcCE
Confidence 448999999999999999999998864 1112 33333344433222 223 222346678899999999999
Q ss_pred EecCCCchHHH-HhccCC--CCCHHHHHHHHHHHHHcCCceeecEEeecCCCHHHHHHHHHHHhcCCCCCCeee
Q 022946 198 YNHNLDTSREF-YSKIIT--TRSYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVP 268 (289)
Q Consensus 198 v~i~let~~~~-~~~i~~--~~~~~~~~~~i~~~~~~Gi~v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~ 268 (289)
|.+.+-+.+.. ..+.+. ....+...+.++.+++.|+.+..++.-.++-+++.+.+.++.+.++ +++.+.
T Consensus 88 i~i~~~~S~~~~~~~~~~~~~e~~~~~~~~i~~a~~~G~~v~~~~eda~r~~~~~l~~~~~~~~~~--g~~~i~ 159 (262)
T cd07948 88 VDLVFGTSPFLREASHGKSITEIIESAVEVIEFVKSKGIEVRFSSEDSFRSDLVDLLRVYRAVDKL--GVNRVG 159 (262)
T ss_pred EEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEeeCCCCHHHHHHHHHHHHHc--CCCEEE
Confidence 88877555322 222222 1235667777899999999998888777777788999999999888 456543
No 164
>cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain. FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox
Probab=97.70 E-value=0.0032 Score=54.16 Aligned_cols=139 Identities=13% Similarity=0.157 Sum_probs=94.9
Q ss_pred CCCCHHHHHHHHHHHHHcCCcEEEEecccCCCCCCchhHHHHHHHHHHHHhc--CceEEEeCCCCCHHHHHHHHHcCCCe
Q 022946 120 KLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDM--GMEVCCTLGMLEKHQAIELKKAGLTA 197 (289)
Q Consensus 120 ~~~~~eei~~~~~~~~~~g~~~i~i~~~~~~~~ge~~~~~~l~e~i~~ik~~--~~~i~~~~g~l~~e~l~~L~~aG~~~ 197 (289)
..++.++.++.++.+.+.|++.|.++. +..+ +.. .+.++.+.+. +..+. .....+.+.++...++|++.
T Consensus 15 ~~~~~~~k~~i~~~L~~~Gv~~iE~g~---p~~~-~~~----~e~~~~l~~~~~~~~~~-~~~r~~~~~v~~a~~~g~~~ 85 (259)
T cd07939 15 VAFSREEKLAIARALDEAGVDEIEVGI---PAMG-EEE----REAIRAIVALGLPARLI-VWCRAVKEDIEAALRCGVTA 85 (259)
T ss_pred CCCCHHHHHHHHHHHHHcCCCEEEEec---CCCC-HHH----HHHHHHHHhcCCCCEEE-EeccCCHHHHHHHHhCCcCE
Confidence 347999999999999999999997753 1112 222 2344444432 33332 12335677889999999999
Q ss_pred EecCCCch-HHHHhccCCC--CCHHHHHHHHHHHHHcCCceeecEEeecCCCHHHHHHHHHHHhcCCCCCCeeee
Q 022946 198 YNHNLDTS-REFYSKIITT--RSYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPI 269 (289)
Q Consensus 198 v~i~let~-~~~~~~i~~~--~~~~~~~~~i~~~~~~Gi~v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~i 269 (289)
+.+.+-.. ....++++.+ ...+...+.++.+++.|+.+..++......+++.+.+.++.+.+. +++.+.+
T Consensus 86 i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~--G~~~i~l 158 (259)
T cd07939 86 VHISIPVSDIHLAHKLGKDRAWVLDQLRRLVGRAKDRGLFVSVGAEDASRADPDFLIEFAEVAQEA--GADRLRF 158 (259)
T ss_pred EEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEeeccCCCCCHHHHHHHHHHHHHC--CCCEEEe
Confidence 98877665 3344444432 245677789999999999888777666567789999999998888 4565543
No 165
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=97.66 E-value=0.0035 Score=55.87 Aligned_cols=135 Identities=16% Similarity=0.099 Sum_probs=94.0
Q ss_pred CCHHHHHHHHHHHHHcCCcEEEEeccc-----CCCCCCc--hhHHHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHcC
Q 022946 122 MTKDAVMQAAQKAKEAGSTRFCMGAAW-----RDTIGRK--TNFNQILEYVKDIRDMGMEVCCTLGMLEKHQAIELKKAG 194 (289)
Q Consensus 122 ~~~eei~~~~~~~~~~g~~~i~i~~~~-----~~~~ge~--~~~~~l~e~i~~ik~~~~~i~~~~g~l~~e~l~~L~~aG 194 (289)
++.+++.+.++.+.+.|++.|.++-++ ....|.+ ...+++.++.+.++...+.....+|.-+.+.++...++|
T Consensus 21 f~~~~~~~ia~~Ld~aGV~~IEvg~g~gl~g~s~~~G~~~~~~~e~i~~~~~~~~~~~~~~ll~pg~~~~~dl~~a~~~g 100 (333)
T TIGR03217 21 FTIEQVRAIAAALDEAGVDAIEVTHGDGLGGSSFNYGFSAHTDLEYIEAAADVVKRAKVAVLLLPGIGTVHDLKAAYDAG 100 (333)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEecCCCCCCccccCCCCCCChHHHHHHHHHhCCCCEEEEEeccCccCHHHHHHHHHCC
Confidence 799999999999999999999885211 1111222 234555555544443333334445666778899999999
Q ss_pred CCeEecCCCchHHHHhccCCCCCHHHHHHHHHHHHHcCCceeecEEeecCCCHHHHHHHHHHHhcCCCCCCeeee
Q 022946 195 LTAYNHNLDTSREFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPI 269 (289)
Q Consensus 195 ~~~v~i~let~~~~~~~i~~~~~~~~~~~~i~~~~~~Gi~v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~i 269 (289)
++.|.+..-.. ..+...+.++.+++.|+.+...++....-+++.+.+.++.+.+. +++.+.+
T Consensus 101 vd~iri~~~~~-----------e~d~~~~~i~~ak~~G~~v~~~l~~s~~~~~e~l~~~a~~~~~~--Ga~~i~i 162 (333)
T TIGR03217 101 ARTVRVATHCT-----------EADVSEQHIGMARELGMDTVGFLMMSHMTPPEKLAEQAKLMESY--GADCVYI 162 (333)
T ss_pred CCEEEEEeccc-----------hHHHHHHHHHHHHHcCCeEEEEEEcccCCCHHHHHHHHHHHHhc--CCCEEEE
Confidence 99988765221 23457889999999999988887777777889999999988888 4565543
No 166
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=97.58 E-value=0.0064 Score=52.52 Aligned_cols=136 Identities=15% Similarity=0.174 Sum_probs=93.5
Q ss_pred CCCHHHHHHHHHHHHHcCCcEEEEecccCC--C-CCCc--hhHHHHHHHHHHHH-hcCceEEEeCCCCCHHHHHHHHHcC
Q 022946 121 LMTKDAVMQAAQKAKEAGSTRFCMGAAWRD--T-IGRK--TNFNQILEYVKDIR-DMGMEVCCTLGMLEKHQAIELKKAG 194 (289)
Q Consensus 121 ~~~~eei~~~~~~~~~~g~~~i~i~~~~~~--~-~ge~--~~~~~l~e~i~~ik-~~~~~i~~~~g~l~~e~l~~L~~aG 194 (289)
.++.++..+.++.+.+.|++.|-++-.... . .+.. ...+.+..+.+..+ +..+...+..+..+.+.++...+.|
T Consensus 16 ~f~~~~~~~ia~~L~~~GVd~IEvG~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~g 95 (266)
T cd07944 16 DFGDEFVKAIYRALAAAGIDYVEIGYRSSPEKEFKGKSAFCDDEFLRRLLGDSKGNTKIAVMVDYGNDDIDLLEPASGSV 95 (266)
T ss_pred cCCHHHHHHHHHHHHHCCCCEEEeecCCCCccccCCCccCCCHHHHHHHHhhhccCCEEEEEECCCCCCHHHHHHHhcCC
Confidence 379999999999999999999977521100 0 0000 01233333333322 2233344455556678888889999
Q ss_pred CCeEecCCCchHHHHhccCCCCCHHHHHHHHHHHHHcCCceeecEEeecCCCHHHHHHHHHHHhcCCCCCCeeee
Q 022946 195 LTAYNHNLDTSREFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPI 269 (289)
Q Consensus 195 ~~~v~i~let~~~~~~~i~~~~~~~~~~~~i~~~~~~Gi~v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~i 269 (289)
++.|.+... ...++...+.++.+++.|+.+..+++-..+.+++.+.+.++.+.+. +++.+.+
T Consensus 96 v~~iri~~~-----------~~~~~~~~~~i~~ak~~G~~v~~~~~~a~~~~~~~~~~~~~~~~~~--g~~~i~l 157 (266)
T cd07944 96 VDMIRVAFH-----------KHEFDEALPLIKAIKEKGYEVFFNLMAISGYSDEELLELLELVNEI--KPDVFYI 157 (266)
T ss_pred cCEEEEecc-----------cccHHHHHHHHHHHHHCCCeEEEEEEeecCCCHHHHHHHHHHHHhC--CCCEEEE
Confidence 998887652 2478899999999999999988888777778889999999998888 4665543
No 167
>TIGR02090 LEU1_arch isopropylmalate/citramalate/homocitrate synthases. Methanogens, then should and aparrently do contain all three of these enzymes. Unfortunately, phylogenetic trees do not resolve into three unambiguous clades, making assignment of function to particular genes problematic. Other archaea which lack a threonine dehydratase (mainly Euryarchaeota) should contain both a CimA and a LeuA gene. This is true of, for example, archaeoglobus fulgidis, but not for the Pyrococci which have none in this clade, but one in TIGR00973 and one in TIGRT00977 which may fulfill these roles. Other species which have only one hit to this model and lack threonine dehydratase are very likely LeuA enzymes.
Probab=97.58 E-value=0.0045 Score=55.95 Aligned_cols=139 Identities=17% Similarity=0.227 Sum_probs=96.5
Q ss_pred CCCCHHHHHHHHHHHHHcCCcEEEEecccCCCCCCchhHHHHHHHHHHHHhcCc--eEEEeCCCCCHHHHHHHHHcCCCe
Q 022946 120 KLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMGM--EVCCTLGMLEKHQAIELKKAGLTA 197 (289)
Q Consensus 120 ~~~~~eei~~~~~~~~~~g~~~i~i~~~~~~~~ge~~~~~~l~e~i~~ik~~~~--~i~~~~g~l~~e~l~~L~~aG~~~ 197 (289)
..++.++.++.++.+.+.|++.|.++. +...+.. .+.++.+.+.+. ++.. ......+.++...++|++.
T Consensus 17 ~~~s~~~k~~ia~~L~~~Gv~~IEvG~----p~~~~~~----~e~i~~i~~~~~~~~v~~-~~r~~~~di~~a~~~g~~~ 87 (363)
T TIGR02090 17 VSLTVEQKVEIARKLDELGVDVIEAGF----PIASEGE----FEAIKKISQEGLNAEICS-LARALKKDIDKAIDCGVDS 87 (363)
T ss_pred CCCCHHHHHHHHHHHHHcCCCEEEEeC----CCCChHH----HHHHHHHHhcCCCcEEEE-EcccCHHHHHHHHHcCcCE
Confidence 348999999999999999999998753 1121222 355555554332 3322 2235678899999999999
Q ss_pred EecCCCchH-HHHhccCCC--CCHHHHHHHHHHHHHcCCceeecEEeecCCCHHHHHHHHHHHhcCCCCCCeeee
Q 022946 198 YNHNLDTSR-EFYSKIITT--RSYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPI 269 (289)
Q Consensus 198 v~i~let~~-~~~~~i~~~--~~~~~~~~~i~~~~~~Gi~v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~i 269 (289)
|.+.+-+.+ ....+++.+ ...+...+.++.+++.|+.+..++.-....+++.+.+.++.+.+. +++.+.+
T Consensus 88 i~i~~~~Sd~~~~~~~~~~~~~~~~~~~~~i~~ak~~G~~v~~~~eda~r~~~~~l~~~~~~~~~~--g~~~i~l 160 (363)
T TIGR02090 88 IHTFIATSPIHLKYKLKKSRDEVLEKAVEAVEYAKEHGLIVEFSAEDATRTDIDFLIKVFKRAEEA--GADRINI 160 (363)
T ss_pred EEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCEEEEEEeecCCCCHHHHHHHHHHHHhC--CCCEEEE
Confidence 988776663 333344332 246788889999999999988776655566788889999988888 4565543
No 168
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members. are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....
Probab=97.55 E-value=0.00098 Score=56.53 Aligned_cols=142 Identities=15% Similarity=0.220 Sum_probs=94.3
Q ss_pred CCHHHHHHHHHHHHHcCCcEEEEecccCCCCCCchhHHHHHHHHHHHHhcCceEEEeCCCCCHHH-HHHHHHcCCCeEec
Q 022946 122 MTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMGMEVCCTLGMLEKHQ-AIELKKAGLTAYNH 200 (289)
Q Consensus 122 ~~~eei~~~~~~~~~~g~~~i~i~~~~~~~~ge~~~~~~l~e~i~~ik~~~~~i~~~~g~l~~e~-l~~L~~aG~~~v~i 200 (289)
++.++.++.++.+.+.|++.|.++. +...+..++.+.++.+.+....+...+....-+.+. ++.++++|++.+.+
T Consensus 11 ~~~~~k~~i~~~L~~~Gv~~iEvg~----~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~g~~~i~i 86 (237)
T PF00682_consen 11 FSTEEKLEIAKALDEAGVDYIEVGF----PFASEDDFEQVRRLREALPNARLQALCRANEEDIERAVEAAKEAGIDIIRI 86 (237)
T ss_dssp --HHHHHHHHHHHHHHTTSEEEEEH----CTSSHHHHHHHHHHHHHHHSSEEEEEEESCHHHHHHHHHHHHHTTSSEEEE
T ss_pred cCHHHHHHHHHHHHHhCCCEEEEcc----cccCHHHHHHhhhhhhhhcccccceeeeehHHHHHHHHHhhHhccCCEEEe
Confidence 7899999999999999999998862 112244566666666555553333334443333333 56677899999988
Q ss_pred CCCchHHHH-hccCC--CCCHHHHHHHHHHHHHcCCceeecEEeecCCCHHHHHHHHHHHhcCCCCCCeeee
Q 022946 201 NLDTSREFY-SKIIT--TRSYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPI 269 (289)
Q Consensus 201 ~let~~~~~-~~i~~--~~~~~~~~~~i~~~~~~Gi~v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~i 269 (289)
.+...+... .+++. ....+...+.++.+++.|+.+..+..-...-+++++.+.++.+.++ +++.+.+
T Consensus 87 ~~~~s~~~~~~~~~~~~~~~~~~~~~~v~~ak~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~--g~~~i~l 156 (237)
T PF00682_consen 87 FISVSDLHIRKNLNKSREEALERIEEAVKYAKELGYEVAFGCEDASRTDPEELLELAEALAEA--GADIIYL 156 (237)
T ss_dssp EEETSHHHHHHHTCSHHHHHHHHHHHHHHHHHHTTSEEEEEETTTGGSSHHHHHHHHHHHHHH--T-SEEEE
T ss_pred cCcccHHHHHHhhcCCHHHHHHHHHHHHHHHHhcCCceEeCccccccccHHHHHHHHHHHHHc--CCeEEEe
Confidence 776653322 33322 1236777788888999999996666655566889999999999888 5676654
No 169
>PRK11858 aksA trans-homoaconitate synthase; Reviewed
Probab=97.55 E-value=0.0042 Score=56.45 Aligned_cols=139 Identities=15% Similarity=0.182 Sum_probs=95.2
Q ss_pred CCCCHHHHHHHHHHHHHcCCcEEEEecccCCCCCCchhHHHHHHHHHHHHhcCce--EEEeCCCCCHHHHHHHHHcCCCe
Q 022946 120 KLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMGME--VCCTLGMLEKHQAIELKKAGLTA 197 (289)
Q Consensus 120 ~~~~~eei~~~~~~~~~~g~~~i~i~~~~~~~~ge~~~~~~l~e~i~~ik~~~~~--i~~~~g~l~~e~l~~L~~aG~~~ 197 (289)
..++.++.++.++.+.+.|++.|-++. +..+ +.. .+.++.+.+.+.. +.+ .+....+.++...++|++.
T Consensus 21 ~~~s~e~k~~ia~~L~~~GV~~IE~G~---p~~~-~~~----~e~i~~i~~~~~~~~i~~-~~r~~~~di~~a~~~g~~~ 91 (378)
T PRK11858 21 VVFTNEEKLAIARMLDEIGVDQIEAGF---PAVS-EDE----KEAIKAIAKLGLNASILA-LNRAVKSDIDASIDCGVDA 91 (378)
T ss_pred CCCCHHHHHHHHHHHHHhCCCEEEEeC---CCcC-hHH----HHHHHHHHhcCCCeEEEE-EcccCHHHHHHHHhCCcCE
Confidence 347999999999999999999997643 1112 222 3344444433333 322 2334577799999999999
Q ss_pred EecCCCch-HHHHhccCCC--CCHHHHHHHHHHHHHcCCceeecEEeecCCCHHHHHHHHHHHhcCCCCCCeeee
Q 022946 198 YNHNLDTS-REFYSKIITT--RSYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPI 269 (289)
Q Consensus 198 v~i~let~-~~~~~~i~~~--~~~~~~~~~i~~~~~~Gi~v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~i 269 (289)
|.+.+.+. .....+++.. ...+...+.++.+++.|+.+..+..-+...+++.+.+.++.+.+. +++.+.+
T Consensus 92 i~i~~~~Sd~h~~~~~~~s~~~~l~~~~~~v~~a~~~G~~v~~~~ed~~r~~~~~l~~~~~~~~~~--Ga~~I~l 164 (378)
T PRK11858 92 VHIFIATSDIHIKHKLKKTREEVLERMVEAVEYAKDHGLYVSFSAEDASRTDLDFLIEFAKAAEEA--GADRVRF 164 (378)
T ss_pred EEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEeccCCCCCHHHHHHHHHHHHhC--CCCEEEE
Confidence 99988777 3344444432 245666778899999999988776665566788889999988888 4565543
No 170
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=97.42 E-value=0.011 Score=52.83 Aligned_cols=135 Identities=13% Similarity=0.047 Sum_probs=90.7
Q ss_pred CCHHHHHHHHHHHHHcCCcEEEEecccC-----CCCCCc--hhHHHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHcC
Q 022946 122 MTKDAVMQAAQKAKEAGSTRFCMGAAWR-----DTIGRK--TNFNQILEYVKDIRDMGMEVCCTLGMLEKHQAIELKKAG 194 (289)
Q Consensus 122 ~~~eei~~~~~~~~~~g~~~i~i~~~~~-----~~~ge~--~~~~~l~e~i~~ik~~~~~i~~~~g~l~~e~l~~L~~aG 194 (289)
++.+++.+.++.+.+.|++.|.++-++. ..+|.+ ...+.+..+.+..+...+.....+|.-+.+.++...++|
T Consensus 22 f~~~~~~~i~~~L~~aGv~~IEvg~~~g~g~~s~~~g~~~~~~~e~i~~~~~~~~~~~~~~ll~pg~~~~~dl~~a~~~g 101 (337)
T PRK08195 22 YTLEQVRAIARALDAAGVPVIEVTHGDGLGGSSFNYGFGAHTDEEYIEAAAEVVKQAKIAALLLPGIGTVDDLKMAYDAG 101 (337)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEeecCCCCCCccccCCCCCCCHHHHHHHHHHhCCCCEEEEEeccCcccHHHHHHHHHcC
Confidence 7999999999999999999988752110 001211 122222222222222222233445666678899999999
Q ss_pred CCeEecCCCchHHHHhccCCCCCHHHHHHHHHHHHHcCCceeecEEeecCCCHHHHHHHHHHHhcCCCCCCeeee
Q 022946 195 LTAYNHNLDTSREFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPI 269 (289)
Q Consensus 195 ~~~v~i~let~~~~~~~i~~~~~~~~~~~~i~~~~~~Gi~v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~i 269 (289)
++.|.+..-.. ..+...+.++.+++.|+.+...++....-+++.+.+.++.+.+. +++.+.+
T Consensus 102 vd~iri~~~~~-----------e~~~~~~~i~~ak~~G~~v~~~l~~a~~~~~e~l~~~a~~~~~~--Ga~~i~i 163 (337)
T PRK08195 102 VRVVRVATHCT-----------EADVSEQHIGLARELGMDTVGFLMMSHMAPPEKLAEQAKLMESY--GAQCVYV 163 (337)
T ss_pred CCEEEEEEecc-----------hHHHHHHHHHHHHHCCCeEEEEEEeccCCCHHHHHHHHHHHHhC--CCCEEEe
Confidence 99988764221 23567889999999999988888777677889999999999888 4665543
No 171
>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain. 4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate
Probab=97.36 E-value=0.016 Score=49.92 Aligned_cols=131 Identities=14% Similarity=0.108 Sum_probs=86.8
Q ss_pred CCCHHHHHHHHHHHHHcCCcEEEEeccc-----CC---CCCCchhHHHHHHHHHHHHh--cCce--EEEeCCCCCHHHHH
Q 022946 121 LMTKDAVMQAAQKAKEAGSTRFCMGAAW-----RD---TIGRKTNFNQILEYVKDIRD--MGME--VCCTLGMLEKHQAI 188 (289)
Q Consensus 121 ~~~~eei~~~~~~~~~~g~~~i~i~~~~-----~~---~~ge~~~~~~l~e~i~~ik~--~~~~--i~~~~g~l~~e~l~ 188 (289)
.++.++.++.++.+.+.|++.+-++... .. +... .. .+.++.+++ .+.+ ....++....+.++
T Consensus 18 ~~~~~~k~~i~~~L~~~Gv~~iEvg~~~~~~~~~~~~~~~~~-~~----~e~i~~~~~~~~~~~~~~~~~~~~~~~~~i~ 92 (263)
T cd07943 18 QFTLEQVRAIARALDAAGVPLIEVGHGDGLGGSSLNYGFAAH-TD----EEYLEAAAEALKQAKLGVLLLPGIGTVDDLK 92 (263)
T ss_pred ecCHHHHHHHHHHHHHcCCCEEEeecCCCCCCcccccCCCCC-Ch----HHHHHHHHHhccCCEEEEEecCCccCHHHHH
Confidence 3799999999999999999998876210 00 1111 12 223333321 1333 33445556678899
Q ss_pred HHHHcCCCeEecCCCchHHHHhccCCCCCHHHHHHHHHHHHHcCCceeecEEeecCCCHHHHHHHHHHHhcCCCCCCeee
Q 022946 189 ELKKAGLTAYNHNLDTSREFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVP 268 (289)
Q Consensus 189 ~L~~aG~~~v~i~let~~~~~~~i~~~~~~~~~~~~i~~~~~~Gi~v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~ 268 (289)
...++|++.+.+..-.. ......+.++.+++.|+.+..+++-...-+++.+.+.++.+.+. +++.+.
T Consensus 93 ~a~~~g~~~iri~~~~s-----------~~~~~~~~i~~ak~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~--G~d~i~ 159 (263)
T cd07943 93 MAADLGVDVVRVATHCT-----------EADVSEQHIGAARKLGMDVVGFLMMSHMASPEELAEQAKLMESY--GADCVY 159 (263)
T ss_pred HHHHcCCCEEEEEechh-----------hHHHHHHHHHHHHHCCCeEEEEEEeccCCCHHHHHHHHHHHHHc--CCCEEE
Confidence 99999999888755332 12456888889999998887777655566788888888888887 456554
Q ss_pred e
Q 022946 269 I 269 (289)
Q Consensus 269 i 269 (289)
+
T Consensus 160 l 160 (263)
T cd07943 160 V 160 (263)
T ss_pred E
Confidence 3
No 172
>TIGR02660 nifV_homocitr homocitrate synthase NifV. This family consists of the NifV clade of homocitrate synthases, most of which are found in operons for nitrogen fixation. Members are closely homologous to enzymes that include 2-isopropylmalate synthase, (R)-citramalate synthase, and homocitrate synthases associated with other processes. The homocitrate made by this enzyme becomes a part of the iron-molybdenum cofactor of nitrogenase.
Probab=97.32 E-value=0.011 Score=53.54 Aligned_cols=138 Identities=14% Similarity=0.167 Sum_probs=92.7
Q ss_pred CCCCHHHHHHHHHHHHHcCCcEEEEecccCCCCCCchhHHHHHHHHHHHHhc--CceEEEeCCCCCHHHHHHHHHcCCCe
Q 022946 120 KLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDM--GMEVCCTLGMLEKHQAIELKKAGLTA 197 (289)
Q Consensus 120 ~~~~~eei~~~~~~~~~~g~~~i~i~~~~~~~~ge~~~~~~l~e~i~~ik~~--~~~i~~~~g~l~~e~l~~L~~aG~~~ 197 (289)
..++.++.++.++.+.+.|++.|.++. +..+ +.. .+.++.+.+. +.++. .....+.+.++...++|++.
T Consensus 18 ~~~s~~~k~~ia~~L~~~Gv~~IEvG~---p~~~-~~~----~e~i~~i~~~~~~~~i~-~~~r~~~~di~~a~~~g~~~ 88 (365)
T TIGR02660 18 VAFTAAEKLAIARALDEAGVDELEVGI---PAMG-EEE----RAVIRAIVALGLPARLM-AWCRARDADIEAAARCGVDA 88 (365)
T ss_pred CCCCHHHHHHHHHHHHHcCCCEEEEeC---CCCC-HHH----HHHHHHHHHcCCCcEEE-EEcCCCHHHHHHHHcCCcCE
Confidence 348999999999999999999998753 1112 222 3344444432 23332 23335688899999999999
Q ss_pred EecCCCch-HHHHhccCCC--CCHHHHHHHHHHHHHcCCceeecEEeecCCCHHHHHHHHHHHhcCCCCCCeee
Q 022946 198 YNHNLDTS-REFYSKIITT--RSYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVP 268 (289)
Q Consensus 198 v~i~let~-~~~~~~i~~~--~~~~~~~~~i~~~~~~Gi~v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~ 268 (289)
|.+.+-+. .-...+++.. ...+...++++.+++.|+.+..+..-+..-+++.+.+.++.+.+. +++.+.
T Consensus 89 i~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~i~~ak~~g~~v~~~~ed~~r~~~~~l~~~~~~~~~~--Ga~~i~ 160 (365)
T TIGR02660 89 VHISIPVSDLQIEAKLRKDRAWVLERLARLVSFARDRGLFVSVGGEDASRADPDFLVELAEVAAEA--GADRFR 160 (365)
T ss_pred EEEEEccCHHHHHHHhCcCHHHHHHHHHHHHHHHHhCCCEEEEeecCCCCCCHHHHHHHHHHHHHc--CcCEEE
Confidence 98887665 3333444332 234556688999999999887766655556678888888888887 455543
No 173
>cd07940 DRE_TIM_IPMS 2-isopropylmalate synthase (IPMS), N-terminal catalytic TIM barrel domain. 2-isopropylmalate synthase (IPMS) catalyzes an aldol-type condensation of acetyl-CoA and 2-oxoisovalerate yielding 2-isopropylmalate and CoA, the first committed step in leucine biosynthesis. This family includes the Arabidopsis thaliana IPMS1 and IPMS2 proteins, the Glycine max GmN56 protein, and the Brassica insularis BatIMS protein. This family also includes a group of archeal IPMS-like proteins represented by the Methanocaldococcus jannaschii AksA protein. AksA catalyzes the condensation of alpha-ketoglutarate and acetyl-CoA to form trans-homoaconitate, one of 13 steps in the conversion of alpha-ketoglutarate and acetylCoA to alpha-ketosuberate, a precursor to coenzyme B and biotin. AksA also catalyzes the condensation of alpha-ketoadipate or alpha-ketopimelate with acetylCoA to form, respectively, the (R)-homocitrate homologs (R)-2-hydroxy-1,2,5-pentanetricarboxylic acid and (R)-2-h
Probab=97.21 E-value=0.03 Score=48.47 Aligned_cols=138 Identities=16% Similarity=0.160 Sum_probs=92.3
Q ss_pred CCCHHHHHHHHHHHHHcCCcEEEEecccCCCCCCchhHHHHHHHHHHHHhc--CceEEEeCCCCCHHHHHHHHHcC----
Q 022946 121 LMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDM--GMEVCCTLGMLEKHQAIELKKAG---- 194 (289)
Q Consensus 121 ~~~~eei~~~~~~~~~~g~~~i~i~~~~~~~~ge~~~~~~l~e~i~~ik~~--~~~i~~~~g~l~~e~l~~L~~aG---- 194 (289)
.++.++.++.++.+.+.|++.|.++.. ...+..+ +.++.+.+. +..+..-. ....+.++...++|
T Consensus 16 ~~~~~~k~~i~~~L~~~Gv~~iEvg~~----~~~~~~~----~~~~~l~~~~~~~~~~~l~-r~~~~~v~~a~~~~~~~~ 86 (268)
T cd07940 16 SLTPEEKLEIARQLDELGVDVIEAGFP----AASPGDF----EAVKRIAREVLNAEICGLA-RAVKKDIDAAAEALKPAK 86 (268)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEeCC----CCCHHHH----HHHHHHHHhCCCCEEEEEc-cCCHhhHHHHHHhCCCCC
Confidence 479999999999999999999987541 1112232 444544432 33332211 12366677788888
Q ss_pred CCeEecCCCch-HHHHhccCCC--CCHHHHHHHHHHHHHcCCceeecEEeecCCCHHHHHHHHHHHhcCCCCCCeeee
Q 022946 195 LTAYNHNLDTS-REFYSKIITT--RSYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPI 269 (289)
Q Consensus 195 ~~~v~i~let~-~~~~~~i~~~--~~~~~~~~~i~~~~~~Gi~v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~i 269 (289)
++.|.+..-.. .....+++.+ ...+...+.++.+++.|+.+..+.+.+..-+++.+.+.++.+.++ +++.+.+
T Consensus 87 ~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~--G~~~i~l 162 (268)
T cd07940 87 VDRIHTFIATSDIHLKYKLKKTREEVLERAVEAVEYAKSHGLDVEFSAEDATRTDLDFLIEVVEAAIEA--GATTINI 162 (268)
T ss_pred CCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEEEeeecCCCCCHHHHHHHHHHHHHc--CCCEEEE
Confidence 89888766444 3333334332 246778889999999999988776666566788889999999888 4665543
No 174
>PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional
Probab=97.12 E-value=0.03 Score=48.92 Aligned_cols=144 Identities=13% Similarity=0.064 Sum_probs=91.3
Q ss_pred CCCCHHHHHHHHHHHHHcCCcEEEEecccCCCCCCchhHHHHHHHHHHHHh-cCceEEEeCCCCCHHHHHHHHHcCCCeE
Q 022946 120 KLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRD-MGMEVCCTLGMLEKHQAIELKKAGLTAY 198 (289)
Q Consensus 120 ~~~~~eei~~~~~~~~~~g~~~i~i~~~~~~~~ge~~~~~~l~e~i~~ik~-~~~~i~~~~g~l~~e~l~~L~~aG~~~v 198 (289)
..++.++.++.++.+.+.|++.|-+++... +.--|.. .+-.+.++.+.+ .+..+..-. .+.+.+++-.++|++.|
T Consensus 21 ~~~s~e~k~~ia~~L~~~Gv~~IEvgsf~~-p~~~p~~-~d~~e~~~~l~~~~~~~~~~l~--~~~~~ie~A~~~g~~~v 96 (287)
T PRK05692 21 RFIPTADKIALIDRLSAAGLSYIEVASFVS-PKWVPQM-ADAAEVMAGIQRRPGVTYAALT--PNLKGLEAALAAGADEV 96 (287)
T ss_pred CCcCHHHHHHHHHHHHHcCCCEEEeCCCcC-ccccccc-ccHHHHHHhhhccCCCeEEEEe--cCHHHHHHHHHcCCCEE
Confidence 448999999999999999999998763211 1000111 112455555543 234432211 36777888899999999
Q ss_pred ecCCCchHH-HHhccCCC--CCHHHHHHHHHHHHHcCCceeecEEeecC---C---CHHHHHHHHHHHhcCCCCCCeeee
Q 022946 199 NHNLDTSRE-FYSKIITT--RSYDERLETLKHVREAGINVCSGGIIGLG---E---AEEDRVGLLHTLATLPTHPESVPI 269 (289)
Q Consensus 199 ~i~let~~~-~~~~i~~~--~~~~~~~~~i~~~~~~Gi~v~~~~i~Glg---e---t~ed~~~~l~~l~~l~~~~~~v~i 269 (289)
.+.+-+.+. ..++++.. ...+...+.++.+++.|+.+..++..-++ + +++.+.+.++.+.+. +.+.+.+
T Consensus 97 ~i~~~~s~~~~~~n~~~~~~e~l~~~~~~v~~ak~~g~~v~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~--G~d~i~l 174 (287)
T PRK05692 97 AVFASASEAFSQKNINCSIAESLERFEPVAEAAKQAGVRVRGYVSCVLGCPYEGEVPPEAVADVAERLFAL--GCYEISL 174 (287)
T ss_pred EEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCEEEEEEEEEecCCCCCCCCHHHHHHHHHHHHHc--CCcEEEe
Confidence 988766533 22333322 23455777888999999988766654331 2 577888888888888 4565543
No 175
>PLN02746 hydroxymethylglutaryl-CoA lyase
Probab=97.11 E-value=0.03 Score=50.06 Aligned_cols=144 Identities=10% Similarity=0.022 Sum_probs=88.7
Q ss_pred CCCCHHHHHHHHHHHHHcCCcEEEEecccCCCCCCchhHHHHHHHHHHHHh-cCceEEEeCCCCCHHHHHHHHHcCCCeE
Q 022946 120 KLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRD-MGMEVCCTLGMLEKHQAIELKKAGLTAY 198 (289)
Q Consensus 120 ~~~~~eei~~~~~~~~~~g~~~i~i~~~~~~~~ge~~~~~~l~e~i~~ik~-~~~~i~~~~g~l~~e~l~~L~~aG~~~v 198 (289)
..++.|+=++.++.+.+.|++.|-.+... .+-.-| ...+-.+.++.++. .+..+..- ..+.+.++...++|++.|
T Consensus 63 ~~~s~e~Ki~ia~~L~~~GV~~IEvGs~v-spk~vP-qmad~~ev~~~i~~~~~~~~~~l--~~n~~die~A~~~g~~~v 138 (347)
T PLN02746 63 NIVPTSVKVELIQRLVSSGLPVVEATSFV-SPKWVP-QLADAKDVMAAVRNLEGARFPVL--TPNLKGFEAAIAAGAKEV 138 (347)
T ss_pred CCCCHHHHHHHHHHHHHcCCCEEEECCCc-Cccccc-ccccHHHHHHHHHhccCCceeEE--cCCHHHHHHHHHcCcCEE
Confidence 34799999999999999999999775421 110001 11122333333332 23332111 137888999999999999
Q ss_pred ecCCCchHHHHh-ccCCC--CCHHHHHHHHHHHHHcCCceeecE--Eeec-C---CCHHHHHHHHHHHhcCCCCCCeeee
Q 022946 199 NHNLDTSREFYS-KIITT--RSYDERLETLKHVREAGINVCSGG--IIGL-G---EAEEDRVGLLHTLATLPTHPESVPI 269 (289)
Q Consensus 199 ~i~let~~~~~~-~i~~~--~~~~~~~~~i~~~~~~Gi~v~~~~--i~Gl-g---et~ed~~~~l~~l~~l~~~~~~v~i 269 (289)
.+.+-+.+...+ +++.. ...+.+.+.++.+++.|+.+..++ .+|. . -+++.+.+.++.+.+. +.+.+.+
T Consensus 139 ~i~~s~Sd~h~~~n~~~t~~e~l~~~~~~v~~Ak~~Gl~v~~~is~~fg~p~~~r~~~~~l~~~~~~~~~~--Gad~I~l 216 (347)
T PLN02746 139 AVFASASESFSKSNINCSIEESLVRYREVALAAKKHSIPVRGYVSCVVGCPIEGPVPPSKVAYVAKELYDM--GCYEISL 216 (347)
T ss_pred EEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEEEEEEeeecCCccCCCCHHHHHHHHHHHHHc--CCCEEEe
Confidence 988855543332 22221 235556678889999999887655 4453 1 2456777888888887 4555543
No 176
>cd07941 DRE_TIM_LeuA3 Desulfobacterium autotrophicum LeuA3 and related proteins, N-terminal catalytic TIM barrel domain. Desulfobacterium autotrophicum LeuA3 is sequence-similar to alpha-isopropylmalate synthase (LeuA) but its exact function is unknown. Members of this family have an N-terminal TIM barrel domain that belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of in
Probab=97.10 E-value=0.067 Score=46.38 Aligned_cols=139 Identities=14% Similarity=0.079 Sum_probs=88.8
Q ss_pred CCCCHHHHHHHHHHHHHcCCcEEEEecccCCCCCCchhHHHHHHHHHHHHhc---CceEEE-----eCC--CCCHHHHHH
Q 022946 120 KLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDM---GMEVCC-----TLG--MLEKHQAIE 189 (289)
Q Consensus 120 ~~~~~eei~~~~~~~~~~g~~~i~i~~~~~~~~ge~~~~~~l~e~i~~ik~~---~~~i~~-----~~g--~l~~e~l~~ 189 (289)
..++.++.++.++.+.+.|++.|.++... . .+..+ +.++.+.+. +.++.. ..+ ..++..++.
T Consensus 15 ~~~s~e~k~~i~~~L~~~Gv~~IE~G~~~---~-~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 86 (273)
T cd07941 15 ISFSVEDKLRIARKLDELGVDYIEGGWPG---S-NPKDT----EFFARAKKLKLKHAKLAAFGSTRRAGVKAEEDPNLQA 86 (273)
T ss_pred CCCCHHHHHHHHHHHHHcCCCEEEecCCc---C-CHHHH----HHHHHHHHcCCCCcEEEEEecccccCCCccchHHHHH
Confidence 34899999999999999999999874411 1 13333 333433322 222211 122 234556888
Q ss_pred HHHcCCCeEecCCCch-HHHHhccCCC--CCHHHHHHHHHHHHHcCCceeecEE---eecCCCHHHHHHHHHHHhcCCCC
Q 022946 190 LKKAGLTAYNHNLDTS-REFYSKIITT--RSYDERLETLKHVREAGINVCSGGI---IGLGEAEEDRVGLLHTLATLPTH 263 (289)
Q Consensus 190 L~~aG~~~v~i~let~-~~~~~~i~~~--~~~~~~~~~i~~~~~~Gi~v~~~~i---~Glget~ed~~~~l~~l~~l~~~ 263 (289)
+.++|++.+.+.+-+. .-..+.++.. ..++...+.++.+++.|+.+..+.+ -|...+++.+.+.++.+.+. +
T Consensus 87 a~~~g~~~i~i~~~~sd~~~~~~~~~~~~~~~~~~~~~i~~ak~~G~~v~~~~~~~~d~~~~~~~~~~~~~~~~~~~--g 164 (273)
T cd07941 87 LLEAGTPVVTIFGKSWDLHVTEALGTTLEENLAMIRDSVAYLKSHGREVIFDAEHFFDGYKANPEYALATLKAAAEA--G 164 (273)
T ss_pred HHhCCCCEEEEEEcCCHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCCeEEEeEEeccccCCCCHHHHHHHHHHHHhC--C
Confidence 9999999988877665 2233344332 3577888899999999998766433 23334577778888888877 4
Q ss_pred CCeee
Q 022946 264 PESVP 268 (289)
Q Consensus 264 ~~~v~ 268 (289)
++.+.
T Consensus 165 ~~~i~ 169 (273)
T cd07941 165 ADWLV 169 (273)
T ss_pred CCEEE
Confidence 56554
No 177
>PRK09389 (R)-citramalate synthase; Provisional
Probab=96.85 E-value=0.054 Score=50.90 Aligned_cols=138 Identities=16% Similarity=0.132 Sum_probs=91.6
Q ss_pred CCCCHHHHHHHHHHHHHcCCcEEEEecccCCCCCCchhHHHHHHHHHHHHhc--CceEEEeCCCCCHHHHHHHHHcCCCe
Q 022946 120 KLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDM--GMEVCCTLGMLEKHQAIELKKAGLTA 197 (289)
Q Consensus 120 ~~~~~eei~~~~~~~~~~g~~~i~i~~~~~~~~ge~~~~~~l~e~i~~ik~~--~~~i~~~~g~l~~e~l~~L~~aG~~~ 197 (289)
..++.++-++.++.+.+.|++.|-++. |...+..+ +.++.+.+. ..++..-. ....+.++...++|++.
T Consensus 19 ~~~s~e~K~~ia~~L~~~Gv~~IE~G~----p~~~~~d~----e~v~~i~~~~~~~~i~a~~-r~~~~di~~a~~~g~~~ 89 (488)
T PRK09389 19 VSLTPEEKLEIARKLDELGVDVIEAGS----AITSEGER----EAIKAVTDEGLNAEICSFA-RAVKVDIDAALECDVDS 89 (488)
T ss_pred CCcCHHHHHHHHHHHHHcCCCEEEEeC----CcCCHHHH----HHHHHHHhcCCCcEEEeec-ccCHHHHHHHHhCCcCE
Confidence 348999999999999999999998754 11223333 333444332 23332222 22366688999999999
Q ss_pred EecCCCchHH-HHhccCCC--CCHHHHHHHHHHHHHcCCceeecEEeecCCCHHHHHHHHHHHhcCCCCCCeee
Q 022946 198 YNHNLDTSRE-FYSKIITT--RSYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVP 268 (289)
Q Consensus 198 v~i~let~~~-~~~~i~~~--~~~~~~~~~i~~~~~~Gi~v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~ 268 (289)
|.+.+-+.+- ...+++.. ...+...+.++.+++.|+.+..+..-+...+++-+.+.++.+.+. +++.+.
T Consensus 90 v~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ak~~g~~v~~~~ed~~r~~~~~l~~~~~~~~~~--Ga~~i~ 161 (488)
T PRK09389 90 VHLVVPTSDLHIEYKLKKTREEVLETAVEAVEYAKDHGLIVELSGEDASRADLDFLKELYKAGIEA--GADRIC 161 (488)
T ss_pred EEEEEccCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCEEEEEEeeCCCCCHHHHHHHHHHHHhC--CCCEEE
Confidence 9888877633 33333332 246777788888999999887776655555677777888888877 455544
No 178
>cd07938 DRE_TIM_HMGL 3-hydroxy-3-methylglutaryl-CoA lyase, catalytic TIM barrel domain. 3-hydroxy-3-methylglutaryl-CoA lyase (HMGL) catalyzes the cleavage of HMG-CoA to acetyl-CoA and acetoacetate, one of the terminal steps in ketone body generation and leucine degradation, and is a key enzyme in the pathway that supplies metabolic fuel to extrahepatic tissues. Mutations in HMGL cause a human autosomal recessive disorder called primary metabolic aciduria that affects ketogenesis and leucine catabolism and can be fatal due to an inability to tolerate hypoglycemia. HMGL has a TIM barrel domain with a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. The cleavage of HMG-CoA requires the presence of a divalent cation like Mg2+ or Mn2+, and the reaction is thought to involve general acid/base catalysis. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropy
Probab=96.78 E-value=0.06 Score=46.71 Aligned_cols=144 Identities=13% Similarity=0.090 Sum_probs=91.8
Q ss_pred CCCCHHHHHHHHHHHHHcCCcEEEEecccCCCCCCchhHHHHHHHHHHHHh-cCceEEEeCCCCCHHHHHHHHHcCCCeE
Q 022946 120 KLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRD-MGMEVCCTLGMLEKHQAIELKKAGLTAY 198 (289)
Q Consensus 120 ~~~~~eei~~~~~~~~~~g~~~i~i~~~~~~~~ge~~~~~~l~e~i~~ik~-~~~~i~~~~g~l~~e~l~~L~~aG~~~v 198 (289)
..++.|+-++.++.+.+.|++.|-++....+... |. +.+..++++.+.. .+.++..-. .+.+.++...++|++.+
T Consensus 15 ~~~s~e~K~~i~~~L~~~Gv~~IEvGs~~~~~~~-p~-~~d~~~~~~~l~~~~~~~~~~~~--~~~~dv~~A~~~g~~~i 90 (274)
T cd07938 15 TFIPTEDKIELIDALSAAGLRRIEVTSFVSPKWV-PQ-MADAEEVLAGLPRRPGVRYSALV--PNLRGAERALAAGVDEV 90 (274)
T ss_pred CCcCHHHHHHHHHHHHHcCCCEEEeCCCCCcccc-cc-cCCHHHHHhhcccCCCCEEEEEC--CCHHHHHHHHHcCcCEE
Confidence 3479999999999999999999988642111100 11 1111133444432 244443222 45777999999999998
Q ss_pred ecCCCchH-HHHhccCCC--CCHHHHHHHHHHHHHcCCceeecEEeecC------CCHHHHHHHHHHHhcCCCCCCeeee
Q 022946 199 NHNLDTSR-EFYSKIITT--RSYDERLETLKHVREAGINVCSGGIIGLG------EAEEDRVGLLHTLATLPTHPESVPI 269 (289)
Q Consensus 199 ~i~let~~-~~~~~i~~~--~~~~~~~~~i~~~~~~Gi~v~~~~i~Glg------et~ed~~~~l~~l~~l~~~~~~v~i 269 (289)
.+.+-+.+ -...+++.. ...+...+.++.+++.|+.+..++..-++ -+.+.+.+.++.+.++ +.+.+.+
T Consensus 91 ~i~~~~Sd~~~~~~~~~s~~~~~~~~~~~v~~ak~~G~~v~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~--Ga~~i~l 168 (274)
T cd07938 91 AVFVSASETFSQKNINCSIAESLERFEPVAELAKAAGLRVRGYVSTAFGCPYEGEVPPERVAEVAERLLDL--GCDEISL 168 (274)
T ss_pred EEEEecCHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEeEecCCCCCCCCHHHHHHHHHHHHHc--CCCEEEE
Confidence 88776663 333444433 24677888899999999987766654331 2567778888888887 4555543
No 179
>PRK00915 2-isopropylmalate synthase; Validated
Probab=96.77 E-value=0.035 Score=52.55 Aligned_cols=139 Identities=14% Similarity=0.109 Sum_probs=86.8
Q ss_pred CCCHHHHHHHHHHHHHcCCcEEEEecccCCCCCCchhHHHHHHHHHHHHhcCceEEEeCCCCCHHH----HHHHHHcCCC
Q 022946 121 LMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMGMEVCCTLGMLEKHQ----AIELKKAGLT 196 (289)
Q Consensus 121 ~~~~eei~~~~~~~~~~g~~~i~i~~~~~~~~ge~~~~~~l~e~i~~ik~~~~~i~~~~g~l~~e~----l~~L~~aG~~ 196 (289)
.++.++-++.++.+.+.|++.|.++. |...+..++.+..+.+.. .+.++..-.- ...+. ++.++++|.+
T Consensus 22 ~~s~e~K~~ia~~L~~~Gv~~IE~G~----p~~s~~d~~~v~~i~~~~--~~~~i~a~~r-~~~~did~a~~a~~~~~~~ 94 (513)
T PRK00915 22 SLTVEEKLQIAKQLERLGVDVIEAGF----PASSPGDFEAVKRIARTV--KNSTVCGLAR-AVKKDIDAAAEALKPAEAP 94 (513)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEcC----CCCChHHHHHHHHHHhhC--CCCEEEEEcc-CCHHHHHHHHHHhhcCCCC
Confidence 48999999999999999999998753 122233444443332222 2333322111 11233 3445578999
Q ss_pred eEecCCCch-HHHHhccCCC--CCHHHHHHHHHHHHHcCCceeecEEeecCCCHHHHHHHHHHHhcCCCCCCeee
Q 022946 197 AYNHNLDTS-REFYSKIITT--RSYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVP 268 (289)
Q Consensus 197 ~v~i~let~-~~~~~~i~~~--~~~~~~~~~i~~~~~~Gi~v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~ 268 (289)
+|.+.+-+. -....+++.. ...+...+.++.+++.|+.+..+..-+..-+.+.+.+.++.+.+. +++.+.
T Consensus 95 ~v~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ak~~g~~v~f~~ed~~r~d~~~l~~~~~~~~~~--Ga~~i~ 167 (513)
T PRK00915 95 RIHTFIATSPIHMEYKLKMSREEVLEMAVEAVKYARSYTDDVEFSAEDATRTDLDFLCRVVEAAIDA--GATTIN 167 (513)
T ss_pred EEEEEECCcHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEeCCCCCCCHHHHHHHHHHHHHc--CCCEEE
Confidence 898888776 3333444332 235666788899999999887666555545567788888888877 455543
No 180
>cd07945 DRE_TIM_CMS Leptospira interrogans citramalate synthase (CMS) and related proteins, N-terminal catalytic TIM barrel domain. Citramalate synthase (CMS) catalyzes the conversion of pyruvate and acetyl-CoA to (R)-citramalate in the first dedicated step of the citramalate pathway. Citramalate is only found in Leptospira interrogans and a few other microorganisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center con
Probab=96.61 E-value=0.16 Score=44.20 Aligned_cols=142 Identities=13% Similarity=0.115 Sum_probs=91.0
Q ss_pred CCCCHHHHHHHHHHH-HHcCCcEEEEecccCCCCCCchhHHHHHHHHHHHHhc----CceEEEeCCCCCHHHHHHHHHcC
Q 022946 120 KLMTKDAVMQAAQKA-KEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDM----GMEVCCTLGMLEKHQAIELKKAG 194 (289)
Q Consensus 120 ~~~~~eei~~~~~~~-~~~g~~~i~i~~~~~~~~ge~~~~~~l~e~i~~ik~~----~~~i~~~~g~l~~e~l~~L~~aG 194 (289)
..++.++-++.++.+ ...|++.|-++. +.. .+..++.+.++.+..... ++.+..-. .....++..+++|
T Consensus 14 ~~~s~e~K~~i~~~L~~~~Gv~~IEvg~---~~~-s~~e~~av~~~~~~~~~~~~~~~~~~~a~~--~~~~~~~~A~~~g 87 (280)
T cd07945 14 VSFSPSEKLNIAKILLQELKVDRIEVAS---ARV-SEGEFEAVQKIIDWAAEEGLLDRIEVLGFV--DGDKSVDWIKSAG 87 (280)
T ss_pred CccCHHHHHHHHHHHHHHhCCCEEEecC---CCC-CHHHHHHHHHHHHHhhhhccccCcEEEEec--CcHHHHHHHHHCC
Confidence 347999999999986 567999998764 111 233333344443322111 23332221 2355688899999
Q ss_pred CCeEecCCCch-HHHHhccCC--CCCHHHHHHHHHHHHHcCCceeecEEe-e--cCCCHHHHHHHHHHHhcCCCCCCeee
Q 022946 195 LTAYNHNLDTS-REFYSKIIT--TRSYDERLETLKHVREAGINVCSGGII-G--LGEAEEDRVGLLHTLATLPTHPESVP 268 (289)
Q Consensus 195 ~~~v~i~let~-~~~~~~i~~--~~~~~~~~~~i~~~~~~Gi~v~~~~i~-G--lget~ed~~~~l~~l~~l~~~~~~v~ 268 (289)
++.|.+.+-++ ....+++++ ....+.+.+.++.+++.|+.+..++.- | +.-+++.+.+.++.+.++ +.+.+.
T Consensus 88 ~~~i~i~~~~S~~h~~~~~~~t~~e~l~~~~~~i~~a~~~G~~v~~~~~d~~~~~r~~~~~~~~~~~~~~~~--G~~~i~ 165 (280)
T cd07945 88 AKVLNLLTKGSLKHCTEQLRKTPEEHFADIREVIEYAIKNGIEVNIYLEDWSNGMRDSPDYVFQLVDFLSDL--PIKRIM 165 (280)
T ss_pred CCEEEEEEeCCHHHHHHHHCcCHHHHHHHHHHHHHHHHhCCCEEEEEEEeCCCCCcCCHHHHHHHHHHHHHc--CCCEEE
Confidence 99999888666 333444443 235677888899999999987766653 1 124678888888888888 455554
Q ss_pred e
Q 022946 269 I 269 (289)
Q Consensus 269 i 269 (289)
+
T Consensus 166 l 166 (280)
T cd07945 166 L 166 (280)
T ss_pred e
Confidence 3
No 181
>cd00739 DHPS DHPS subgroup of Pterin binding enzymes. DHPS (dihydropteroate synthase), a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS.
Probab=96.37 E-value=0.32 Score=41.73 Aligned_cols=137 Identities=15% Similarity=0.221 Sum_probs=81.1
Q ss_pred CCCHHHHHHHHHHHHHcCCcEEEEecccCCCCC----CchhHHHHHHHHHHHHhc-CceEEEeCCCCCHHHHHHHHHcCC
Q 022946 121 LMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIG----RKTNFNQILEYVKDIRDM-GMEVCCTLGMLEKHQAIELKKAGL 195 (289)
Q Consensus 121 ~~~~eei~~~~~~~~~~g~~~i~i~~~~~~~~g----e~~~~~~l~e~i~~ik~~-~~~i~~~~g~l~~e~l~~L~~aG~ 195 (289)
..+.+++++.+....+.|++-|-+++....++. +....+++..+++.+++. ++.+ +..+.+.+.+++-.++|.
T Consensus 20 ~~~~~~~~~~a~~~~~~GAdiIDIG~~st~p~~~~i~~~~E~~rl~~~v~~i~~~~~~pl--SIDT~~~~v~e~al~~G~ 97 (257)
T cd00739 20 FLSLDKAVAHAEKMIAEGADIIDIGGESTRPGADPVSVEEELERVIPVLEALRGELDVLI--SVDTFRAEVARAALEAGA 97 (257)
T ss_pred CCCHHHHHHHHHHHHHCCCCEEEECCCcCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCcE--EEeCCCHHHHHHHHHhCC
Confidence 368999999999999999998888654333322 224556777778877743 4433 334456666666556666
Q ss_pred CeEe-cCCCch-HHHHh---ccC-------CC---CC----------HH----HHHHHHHHHHHcCC---ceeecEEeec
Q 022946 196 TAYN-HNLDTS-REFYS---KII-------TT---RS----------YD----ERLETLKHVREAGI---NVCSGGIIGL 243 (289)
Q Consensus 196 ~~v~-i~let~-~~~~~---~i~-------~~---~~----------~~----~~~~~i~~~~~~Gi---~v~~~~i~Gl 243 (289)
+.|+ ++.+.. +++++ +.. .. .+ .+ ...+.++.+.+.|+ ++..+-.+|+
T Consensus 98 ~iINdisg~~~~~~~~~l~~~~~~~vV~m~~~g~p~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Gi~~~~Ii~DPg~gf 177 (257)
T cd00739 98 DIINDVSGGSDDPAMLEVAAEYGAPLVLMHMRGTPKTMQENPYYEDVVDEVLSFLEARLEAAESAGVARNRIILDPGIGF 177 (257)
T ss_pred CEEEeCCCCCCChHHHHHHHHcCCCEEEECCCCCCcccccCCCcccHHHHHHHHHHHHHHHHHHcCCCHHHEEEecCCCc
Confidence 6655 444332 33322 110 00 00 12 23455666888998 4667767788
Q ss_pred CCCHHHHHHHHHHHhc
Q 022946 244 GEAEEDRVGLLHTLAT 259 (289)
Q Consensus 244 get~ed~~~~l~~l~~ 259 (289)
+.+.++-.++++.+..
T Consensus 178 ~ks~~~~~~~l~~i~~ 193 (257)
T cd00739 178 GKTPEHNLELLRRLDE 193 (257)
T ss_pred ccCHHHHHHHHHHHHH
Confidence 7776555555555443
No 182
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain. This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex
Probab=96.33 E-value=0.21 Score=43.38 Aligned_cols=135 Identities=16% Similarity=0.127 Sum_probs=85.1
Q ss_pred CCCHHHHHHHHHHHHHcCCcEEEEecccCC-----CCCCchhHHHHHHHHHHHHhcCceEEEe----CC------CCCHH
Q 022946 121 LMTKDAVMQAAQKAKEAGSTRFCMGAAWRD-----TIGRKTNFNQILEYVKDIRDMGMEVCCT----LG------MLEKH 185 (289)
Q Consensus 121 ~~~~eei~~~~~~~~~~g~~~i~i~~~~~~-----~~ge~~~~~~l~e~i~~ik~~~~~i~~~----~g------~l~~e 185 (289)
.++.++.++.+..+.+.|++.|-++++... ..++ ..++.+.++.+...+..+..... .| ...++
T Consensus 17 ~~~~~~~~~ia~~L~~~Gv~~iE~G~~a~~~~~~~~~~~-~~~e~i~~~~~~~~~~~l~~~~r~~~~~~~~~~p~~~~~~ 95 (275)
T cd07937 17 RMRTEDMLPIAEALDEAGFFSLEVWGGATFDVCMRFLNE-DPWERLRELRKAMPNTPLQMLLRGQNLVGYRHYPDDVVEL 95 (275)
T ss_pred eccHHHHHHHHHHHHHcCCCEEEccCCcchhhhccccCC-CHHHHHHHHHHhCCCCceehhcccccccCccCCCcHHHHH
Confidence 378999999999999999999987653210 0121 23333333333222222222111 11 13567
Q ss_pred HHHHHHHcCCCeEecCCCchHHHHhccCCCCCHHHHHHHHHHHHHcCCceeecEEe--ecCCCHHHHHHHHHHHhcCCCC
Q 022946 186 QAIELKKAGLTAYNHNLDTSREFYSKIITTRSYDERLETLKHVREAGINVCSGGII--GLGEAEEDRVGLLHTLATLPTH 263 (289)
Q Consensus 186 ~l~~L~~aG~~~v~i~let~~~~~~~i~~~~~~~~~~~~i~~~~~~Gi~v~~~~i~--Glget~ed~~~~l~~l~~l~~~ 263 (289)
.++...++|++.|.+..-. ...+...+.++.+++.|+.+...+.. +..-+++.+.+.++.+.+. +
T Consensus 96 di~~~~~~g~~~iri~~~~-----------~~~~~~~~~i~~ak~~G~~v~~~i~~~~~~~~~~~~~~~~~~~~~~~--G 162 (275)
T cd07937 96 FVEKAAKNGIDIFRIFDAL-----------NDVRNLEVAIKAVKKAGKHVEGAICYTGSPVHTLEYYVKLAKELEDM--G 162 (275)
T ss_pred HHHHHHHcCCCEEEEeecC-----------ChHHHHHHHHHHHHHCCCeEEEEEEecCCCCCCHHHHHHHHHHHHHc--C
Confidence 7888899999998876532 23678888999999999877665543 2256678888888888887 4
Q ss_pred CCeeee
Q 022946 264 PESVPI 269 (289)
Q Consensus 264 ~~~v~i 269 (289)
++.+.+
T Consensus 163 a~~i~l 168 (275)
T cd07937 163 ADSICI 168 (275)
T ss_pred CCEEEE
Confidence 555543
No 183
>PRK08091 ribulose-phosphate 3-epimerase; Validated
Probab=96.16 E-value=0.13 Score=43.11 Aligned_cols=127 Identities=11% Similarity=-0.084 Sum_probs=78.7
Q ss_pred CHHHHHHHHHHHHHcCCcEEEE-ecccCCCCCCchhHHHHHHHHHHHHhcCceEEEeCCC-CCHHHHHHHHHcCCCeEec
Q 022946 123 TKDAVMQAAQKAKEAGSTRFCM-GAAWRDTIGRKTNFNQILEYVKDIRDMGMEVCCTLGM-LEKHQAIELKKAGLTAYNH 200 (289)
Q Consensus 123 ~~eei~~~~~~~~~~g~~~i~i-~~~~~~~~ge~~~~~~l~e~i~~ik~~~~~i~~~~g~-l~~e~l~~L~~aG~~~v~i 200 (289)
+.-.+.++++.+.+.|++.+++ ..++. +...-..-..+++.++ +...+++ +.-. -..+.++.+.++|.+.|.+
T Consensus 23 d~~~l~~el~~l~~~g~d~lHiDVMDG~-FVPNitfGp~~i~~i~--~~~~~Dv--HLMv~~P~~~i~~~~~aGad~It~ 97 (228)
T PRK08091 23 NWLKFNETLTTLSENQLRLLHFDIADGQ-FSPFFTVGAIAIKQFP--THCFKDV--HLMVRDQFEVAKACVAAGADIVTL 97 (228)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEeccCCC-cCCccccCHHHHHHhC--CCCCEEE--EeccCCHHHHHHHHHHhCCCEEEE
Confidence 4567888888999999999888 22221 1111112244554443 1222333 3222 2466789999999999999
Q ss_pred CCCchHHHHhccCCCCCHHHHHHHHHHHHHcCCceeecEEeecCCCHHHHHHHHHHHhcCCCCCCeeeecccee
Q 022946 201 NLDTSREFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLA 274 (289)
Q Consensus 201 ~let~~~~~~~i~~~~~~~~~~~~i~~~~~~Gi~v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~i~~~~p 274 (289)
..|+. .+..+.++.+++.|+.+.+++.+..+-..+++...+.. .+.|-++.-.|
T Consensus 98 H~Ea~-------------~~~~~~l~~Ik~~g~~~kaGlalnP~Tp~~~i~~~l~~-------vD~VLiMtV~P 151 (228)
T PRK08091 98 QVEQT-------------HDLALTIEWLAKQKTTVLIGLCLCPETPISLLEPYLDQ-------IDLIQILTLDP 151 (228)
T ss_pred cccCc-------------ccHHHHHHHHHHCCCCceEEEEECCCCCHHHHHHHHhh-------cCEEEEEEECC
Confidence 99863 22467788888899866777777665555555555442 35565655544
No 184
>PRK11613 folP dihydropteroate synthase; Provisional
Probab=96.08 E-value=0.86 Score=39.62 Aligned_cols=146 Identities=18% Similarity=0.162 Sum_probs=88.0
Q ss_pred CCHHHHHHHHHHHHHcCCcEEEEecccCCCCCC----chhHHHHHHHHHHHHh-cCceEEEeCCCCCHHHHHHHHHcCCC
Q 022946 122 MTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGR----KTNFNQILEYVKDIRD-MGMEVCCTLGMLEKHQAIELKKAGLT 196 (289)
Q Consensus 122 ~~~eei~~~~~~~~~~g~~~i~i~~~~~~~~ge----~~~~~~l~e~i~~ik~-~~~~i~~~~g~l~~e~l~~L~~aG~~ 196 (289)
.+++.+++.+..+.+.|++-|-++|....++.+ ...++++...++.+++ .++. ++..+...+++++-.++|++
T Consensus 35 ~~~~~a~~~a~~~~~~GAdIIDIGgeSTrPg~~~v~~eeE~~Rv~pvI~~l~~~~~~~--ISIDT~~~~va~~AL~~Gad 112 (282)
T PRK11613 35 NSLIDAVKHANLMINAGATIIDVGGESTRPGAAEVSVEEELDRVIPVVEAIAQRFEVW--ISVDTSKPEVIRESAKAGAH 112 (282)
T ss_pred CCHHHHHHHHHHHHHCCCcEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCe--EEEECCCHHHHHHHHHcCCC
Confidence 589999999999999999988887643333322 2456678888888873 3443 34455667777777777777
Q ss_pred eEe-c-CCCc-h-HHHHhccC--------C--C------CC--------HHHHHHHHHHHHHcCC---ceeecEEeecCC
Q 022946 197 AYN-H-NLDT-S-REFYSKII--------T--T------RS--------YDERLETLKHVREAGI---NVCSGGIIGLGE 245 (289)
Q Consensus 197 ~v~-i-~let-~-~~~~~~i~--------~--~------~~--------~~~~~~~i~~~~~~Gi---~v~~~~i~Glge 245 (289)
.|+ + ++.. - -++..+.. . + .. .+...+.++.+.+.|+ ++..+--+|++.
T Consensus 113 iINDI~g~~d~~~~~~~a~~~~~vVlmh~~g~p~~~~~~~~y~dv~~~v~~~l~~~i~~a~~~GI~~~~IilDPGiGF~k 192 (282)
T PRK11613 113 IINDIRSLSEPGALEAAAETGLPVCLMHMQGNPKTMQEAPKYDDVFAEVNRYFIEQIARCEAAGIAKEKLLLDPGFGFGK 192 (282)
T ss_pred EEEECCCCCCHHHHHHHHHcCCCEEEEcCCCCCCccccCCCcccHHHHHHHHHHHHHHHHHHcCCChhhEEEeCCCCcCC
Confidence 664 2 3321 1 11111110 0 0 01 1333466677888999 465655578888
Q ss_pred CHHHHHHHHHHHh---cCCCCCCeeeec
Q 022946 246 AEEDRVGLLHTLA---TLPTHPESVPIN 270 (289)
Q Consensus 246 t~ed~~~~l~~l~---~l~~~~~~v~i~ 270 (289)
+.++-.+++..+. .++ .|-.++++
T Consensus 193 ~~~~n~~ll~~l~~l~~lg-~Pilvg~S 219 (282)
T PRK11613 193 NLSHNYQLLARLAEFHHFN-LPLLVGMS 219 (282)
T ss_pred CHHHHHHHHHHHHHHHhCC-CCEEEEec
Confidence 8876666655554 443 24445554
No 185
>PRK12331 oxaloacetate decarboxylase; Provisional
Probab=95.91 E-value=0.45 Score=44.23 Aligned_cols=136 Identities=13% Similarity=0.088 Sum_probs=79.6
Q ss_pred CCCHHHHHHHHHHHHHcCCcEEEEecccCCCC----CCchhHHHHHHHHHHHHhcCceEEEe----CCC------CCHHH
Q 022946 121 LMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTI----GRKTNFNQILEYVKDIRDMGMEVCCT----LGM------LEKHQ 186 (289)
Q Consensus 121 ~~~~eei~~~~~~~~~~g~~~i~i~~~~~~~~----ge~~~~~~l~e~i~~ik~~~~~i~~~----~g~------l~~e~ 186 (289)
.++.++.++.++.+.+.|+..+-+.||..++. -.+..++.+..+-+.++...+..... .|. +..+.
T Consensus 22 ~~~t~dkl~ia~~Ld~~Gv~~IE~~ggatf~~~~~f~~e~p~e~l~~l~~~~~~~~l~~l~r~~N~~G~~~~pddvv~~~ 101 (448)
T PRK12331 22 RMTTEEMLPILEKLDNAGYHSLEMWGGATFDACLRFLNEDPWERLRKIRKAVKKTKLQMLLRGQNLLGYRNYADDVVESF 101 (448)
T ss_pred ccCHHHHHHHHHHHHHcCCCEEEecCCccchhhhccCCCCHHHHHHHHHHhCCCCEEEEEeccccccccccCchhhHHHH
Confidence 48999999999999999999998865432221 11223333333322222222221111 232 34566
Q ss_pred HHHHHHcCCCeEecCCCchHHHHhccCCCCCHHHHHHHHHHHHHcCCceeecEEe--ecCCCHHHHHHHHHHHhcCCCCC
Q 022946 187 AIELKKAGLTAYNHNLDTSREFYSKIITTRSYDERLETLKHVREAGINVCSGGII--GLGEAEEDRVGLLHTLATLPTHP 264 (289)
Q Consensus 187 l~~L~~aG~~~v~i~let~~~~~~~i~~~~~~~~~~~~i~~~~~~Gi~v~~~~i~--Glget~ed~~~~l~~l~~l~~~~ 264 (289)
+++..++|++.+.+..-..+ .....+.++.+++.|+.+...+-+ +--.+.+-+.+.++.+.+. +.
T Consensus 102 v~~A~~~Gvd~irif~~lnd-----------~~n~~~~v~~ak~~G~~v~~~i~~t~~p~~~~~~~~~~a~~l~~~--Ga 168 (448)
T PRK12331 102 VQKSVENGIDIIRIFDALND-----------VRNLETAVKATKKAGGHAQVAISYTTSPVHTIDYFVKLAKEMQEM--GA 168 (448)
T ss_pred HHHHHHCCCCEEEEEEecCc-----------HHHHHHHHHHHHHcCCeEEEEEEeecCCCCCHHHHHHHHHHHHHc--CC
Confidence 78888899998877653321 123566788888888765443333 2244667777777777777 45
Q ss_pred Ceeee
Q 022946 265 ESVPI 269 (289)
Q Consensus 265 ~~v~i 269 (289)
+.+.+
T Consensus 169 d~I~i 173 (448)
T PRK12331 169 DSICI 173 (448)
T ss_pred CEEEE
Confidence 55443
No 186
>TIGR00977 LeuA_rel 2-isopropylmalate synthase/homocitrate synthase family protein. This model represents uncharacterized proteins related to 2-isopropylmalate synthases and homocitrate synthases but phylogenetically distint. Each species represented in the seed alignment also has a member of a known family of 2-isopropylmalate synthases.
Probab=95.76 E-value=0.45 Score=45.26 Aligned_cols=143 Identities=11% Similarity=0.014 Sum_probs=90.4
Q ss_pred CCCCHHHHHHHHHHHHHcCCcEEEEecccCCCCCCchhHHHHHHHHHHHHhcCceEEEe-----CCC--CCHHHHHHHHH
Q 022946 120 KLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMGMEVCCT-----LGM--LEKHQAIELKK 192 (289)
Q Consensus 120 ~~~~~eei~~~~~~~~~~g~~~i~i~~~~~~~~ge~~~~~~l~e~i~~ik~~~~~i~~~-----~g~--l~~e~l~~L~~ 192 (289)
..++.++-++.++.+.+.|++.|-.+. |...|..++.+..+.+. .-.+.++..- .+. ..+..++.+.+
T Consensus 18 ~~~s~eeKl~Ia~~L~~~GVd~IE~G~----p~~s~~d~~~v~~i~~~-~~~~~~i~~~~r~~r~~~~~~~d~~~ea~~~ 92 (526)
T TIGR00977 18 VSFSLEDKIRIAERLDDLGIHYIEGGW----PGANPKDVQFFWQLKEM-NFKNAKIVAFCSTRRPHKKVEEDKMLQALIK 92 (526)
T ss_pred CCCCHHHHHHHHHHHHHcCCCEEEEeC----CCCChHHHHHHHHHHHh-CCCCcEEEEEeeecCCCCCCchHHHHHHHhc
Confidence 348999999999999999999997742 22234455444443321 1012333221 121 23556899999
Q ss_pred cCCCeEecCCCch-HHHHhccCCC--CCHHHHHHHHHHHHHcCCceeecEE---eecCCCHHHHHHHHHHHhcCCCCCCe
Q 022946 193 AGLTAYNHNLDTS-REFYSKIITT--RSYDERLETLKHVREAGINVCSGGI---IGLGEAEEDRVGLLHTLATLPTHPES 266 (289)
Q Consensus 193 aG~~~v~i~let~-~~~~~~i~~~--~~~~~~~~~i~~~~~~Gi~v~~~~i---~Glget~ed~~~~l~~l~~l~~~~~~ 266 (289)
+|.+.|.+.+-+. -....+++.. ...+...+.++.+++.|..|..... -|.--+++.+.+.++.+.+. +++.
T Consensus 93 ~~~~~v~i~~~~Sd~h~~~~l~~s~ee~l~~~~~~v~~ak~~g~~V~~~~e~f~D~~r~~~~~l~~~~~~a~~a--Gad~ 170 (526)
T TIGR00977 93 AETPVVTIFGKSWDLHVLEALQTTLEENLAMIYDTVAYLKRQGDEVIYDAEHFFDGYKANPEYALATLATAQQA--GADW 170 (526)
T ss_pred CCCCEEEEEeCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEEEEeeeeeecccCCHHHHHHHHHHHHhC--CCCe
Confidence 9999999887776 3333344332 2456667778899999998754332 34445677888888888877 4555
Q ss_pred eee
Q 022946 267 VPI 269 (289)
Q Consensus 267 v~i 269 (289)
+.+
T Consensus 171 i~i 173 (526)
T TIGR00977 171 LVL 173 (526)
T ss_pred EEE
Confidence 543
No 187
>PRK12344 putative alpha-isopropylmalate/homocitrate synthase family transferase; Provisional
Probab=95.75 E-value=0.46 Score=45.18 Aligned_cols=139 Identities=14% Similarity=0.101 Sum_probs=88.1
Q ss_pred CCCCHHHHHHHHHHHHHcCCcEEEEecccCCCCCCchhHHHHHHHHHHHHhc---CceEEE-----eCCC--CCHHHHHH
Q 022946 120 KLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDM---GMEVCC-----TLGM--LEKHQAIE 189 (289)
Q Consensus 120 ~~~~~eei~~~~~~~~~~g~~~i~i~~~~~~~~ge~~~~~~l~e~i~~ik~~---~~~i~~-----~~g~--l~~e~l~~ 189 (289)
..++.++.++.++.+.+.|++.|.++.. ...+..++ .++.+.+. +.++.. ..+. .++..++.
T Consensus 22 ~~~s~e~Kl~ia~~L~~~Gvd~IEvG~p----~as~~d~~----~~~~i~~~~l~~~~i~~~~~~~~~~i~~~~d~~~e~ 93 (524)
T PRK12344 22 ISFSVEDKLRIARKLDELGVDYIEGGWP----GSNPKDTE----FFKRAKELKLKHAKLAAFGSTRRAGVSAEEDPNLQA 93 (524)
T ss_pred CCCCHHHHHHHHHHHHHcCCCEEEEcCC----cCChhHHH----HHHHHHHhCCCCcEEEEEeeccccCCCcccHHHHHH
Confidence 4489999999999999999999987431 11233332 33333321 233321 1122 24567899
Q ss_pred HHHcCCCeEecCCCchH-HHHhccCC--CCCHHHHHHHHHHHHHcCCceeecEE---eecCCCHHHHHHHHHHHhcCCCC
Q 022946 190 LKKAGLTAYNHNLDTSR-EFYSKIIT--TRSYDERLETLKHVREAGINVCSGGI---IGLGEAEEDRVGLLHTLATLPTH 263 (289)
Q Consensus 190 L~~aG~~~v~i~let~~-~~~~~i~~--~~~~~~~~~~i~~~~~~Gi~v~~~~i---~Glget~ed~~~~l~~l~~l~~~ 263 (289)
+.++|++.|.+.+-+.+ -...+++. ....+...+.++.+++.|..+..+.. -+.-.+.+-+.+.++.+.+. +
T Consensus 94 ~~~~g~~~i~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ak~~G~~v~~~~e~~~Da~r~d~~~l~~~~~~~~~~--G 171 (524)
T PRK12344 94 LLDAGTPVVTIFGKSWDLHVTEALRTTLEENLAMIRDSVAYLKAHGREVIFDAEHFFDGYKANPEYALATLKAAAEA--G 171 (524)
T ss_pred HHhCCCCEEEEEECCCHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCCeEEEccccccccccCCHHHHHHHHHHHHhC--C
Confidence 99999999998877763 33344433 23567777888899999998765433 23334566677777777777 4
Q ss_pred CCeee
Q 022946 264 PESVP 268 (289)
Q Consensus 264 ~~~v~ 268 (289)
++.+.
T Consensus 172 ad~i~ 176 (524)
T PRK12344 172 ADWVV 176 (524)
T ss_pred CCeEE
Confidence 56554
No 188
>PRK12330 oxaloacetate decarboxylase; Provisional
Probab=95.71 E-value=0.44 Score=44.75 Aligned_cols=134 Identities=12% Similarity=0.101 Sum_probs=77.8
Q ss_pred CCCHHHHHHHHHHHHHcCCcEEEEecccCCC-----CCCchhHHHHHHHHHHHHhcCceEEEe----CCC--CC----HH
Q 022946 121 LMTKDAVMQAAQKAKEAGSTRFCMGAAWRDT-----IGRKTNFNQILEYVKDIRDMGMEVCCT----LGM--LE----KH 185 (289)
Q Consensus 121 ~~~~eei~~~~~~~~~~g~~~i~i~~~~~~~-----~ge~~~~~~l~e~i~~ik~~~~~i~~~----~g~--l~----~e 185 (289)
.++.++.+..++.+.+.|+..+-+.||..+. .+| ..++++..+-+.+++..+..... .|+ .. +.
T Consensus 23 r~~t~d~l~ia~~ld~~G~~siE~~GGatfd~~~rfl~E-dpwerlr~lr~~~~nt~lqmL~Rg~N~vGy~~y~ddvv~~ 101 (499)
T PRK12330 23 RMAMEDMVGACEDIDNAGYWSVECWGGATFDACIRFLNE-DPWERLRTFRKLMPNSRLQMLLRGQNLLGYRHYEDEVVDR 101 (499)
T ss_pred cCCHHHHHHHHHHHHhcCCCEEEecCCcchhhhhcccCC-CHHHHHHHHHHhCCCCeEEEEEcccccCCccCcchhHHHH
Confidence 3899999999999999999999886554333 222 23444444444443333333222 222 23 44
Q ss_pred HHHHHHHcCCCeEecCCCchHHHHhccCCCCCHHHHHHHHHHHHHcCCceeecE--EeecCCCHHHHHHHHHHHhcCCCC
Q 022946 186 QAIELKKAGLTAYNHNLDTSREFYSKIITTRSYDERLETLKHVREAGINVCSGG--IIGLGEAEEDRVGLLHTLATLPTH 263 (289)
Q Consensus 186 ~l~~L~~aG~~~v~i~let~~~~~~~i~~~~~~~~~~~~i~~~~~~Gi~v~~~~--i~Glget~ed~~~~l~~l~~l~~~ 263 (289)
.++...++|+|.+.+..-. ...+....+++.++++|..+...+ ..+...|.+.+.+.++.+.++ +
T Consensus 102 fv~~a~~~Gidi~RIfd~l-----------ndv~nl~~ai~~vk~ag~~~~~~i~yt~sp~~t~e~~~~~a~~l~~~--G 168 (499)
T PRK12330 102 FVEKSAENGMDVFRVFDAL-----------NDPRNLEHAMKAVKKVGKHAQGTICYTVSPIHTVEGFVEQAKRLLDM--G 168 (499)
T ss_pred HHHHHHHcCCCEEEEEecC-----------ChHHHHHHHHHHHHHhCCeEEEEEEEecCCCCCHHHHHHHHHHHHHc--C
Confidence 5666677799987765422 233555666666666666543333 334456666666666666666 3
Q ss_pred CCeee
Q 022946 264 PESVP 268 (289)
Q Consensus 264 ~~~v~ 268 (289)
.+.+.
T Consensus 169 ad~I~ 173 (499)
T PRK12330 169 ADSIC 173 (499)
T ss_pred CCEEE
Confidence 44443
No 189
>TIGR00973 leuA_bact 2-isopropylmalate synthase, bacterial type. A larger family of homologous proteins includes homocitrate synthase, distinct lineages of 2-isopropylmalate synthase, several distinct, uncharacterized, orthologous sets in the Archaea, and other related enzymes. This model describes a family of 2-isopropylmalate synthases found primarily in Bacteria. The homologous families in the Archaea may represent isozymes and/or related enzymes.
Probab=95.58 E-value=0.31 Score=45.96 Aligned_cols=139 Identities=12% Similarity=0.070 Sum_probs=83.9
Q ss_pred CCCHHHHHHHHHHHHHcCCcEEEEecccCCCCCCchhHHHHHHHHHHHHhcCceEEEeCCCCCHHHHH----HHHHcCCC
Q 022946 121 LMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMGMEVCCTLGMLEKHQAI----ELKKAGLT 196 (289)
Q Consensus 121 ~~~~eei~~~~~~~~~~g~~~i~i~~~~~~~~ge~~~~~~l~e~i~~ik~~~~~i~~~~g~l~~e~l~----~L~~aG~~ 196 (289)
.++.++-++.++.+.+.|++.|-++. |...+..++.+..+.+..+ +.++..-. ....+.++ .++.++.+
T Consensus 19 ~~s~e~K~~ia~~L~~~GV~~IEvG~----p~~s~~d~e~v~~i~~~~~--~~~i~al~-r~~~~did~a~~al~~~~~~ 91 (494)
T TIGR00973 19 SLTVEEKLQIALALERLGVDIIEAGF----PVSSPGDFEAVQRIARTVK--NPRVCGLA-RCVEKDIDAAAEALKPAEKF 91 (494)
T ss_pred CcCHHHHHHHHHHHHHcCCCEEEEEC----CCCCHHHHHHHHHHHHhCC--CCEEEEEc-CCCHHhHHHHHHhccccCCC
Confidence 38999999999999999999997643 2222334444433322221 23333221 12233344 44455778
Q ss_pred eEecCCCch-HHHHhccCCC--CCHHHHHHHHHHHHHcCCceeecEEeecCCCHHHHHHHHHHHhcCCCCCCeee
Q 022946 197 AYNHNLDTS-REFYSKIITT--RSYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVP 268 (289)
Q Consensus 197 ~v~i~let~-~~~~~~i~~~--~~~~~~~~~i~~~~~~Gi~v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~ 268 (289)
+|.+.+-+. --...+++.. ...+...+.++.+++.|..+..+..-+..-+++.+.+.++.+.+. +++.+.
T Consensus 92 ~v~i~~~~S~~h~~~~l~~s~~e~l~~~~~~v~~a~~~g~~v~f~~Ed~~r~d~~~l~~~~~~~~~~--Ga~~i~ 164 (494)
T TIGR00973 92 RIHTFIATSPIHLEHKLKMTRDEVLERAVGMVKYAKNFTDDVEFSCEDAGRTEIPFLARIVEAAINA--GATTIN 164 (494)
T ss_pred EEEEEEccCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEEEEcCCCCCCCHHHHHHHHHHHHHc--CCCEEE
Confidence 888877666 3333344332 234556678888999998876666555555677788888888777 355443
No 190
>PLN03228 methylthioalkylmalate synthase; Provisional
Probab=95.54 E-value=0.67 Score=43.70 Aligned_cols=143 Identities=15% Similarity=0.114 Sum_probs=79.2
Q ss_pred CCCCHHHHHHHHHHHHHcCCcEEEEecccCCCCCCchhHHHHHHHHHHHHh-----cCc-eEEEeCCCCCHHHHHHHHH-
Q 022946 120 KLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRD-----MGM-EVCCTLGMLEKHQAIELKK- 192 (289)
Q Consensus 120 ~~~~~eei~~~~~~~~~~g~~~i~i~~~~~~~~ge~~~~~~l~e~i~~ik~-----~~~-~i~~~~g~l~~e~l~~L~~- 192 (289)
..++.++-++.++.+.+.|++.|.++. |...+..++.+..+.+.... .+. ......+....+.++.-.+
T Consensus 101 v~fs~eeKi~Ia~~L~~~GVd~IEvG~----Pa~s~~e~e~i~~i~~~~~~~~~~~~~l~~~i~a~~R~~~~dId~a~~a 176 (503)
T PLN03228 101 GSLTPPQKLEIARQLAKLRVDIMEVGF----PGSSEEEFEAVKTIAKTVGNEVDEETGYVPVICGIARCKKRDIEAAWEA 176 (503)
T ss_pred CCCCHHHHHHHHHHHHHcCCCEEEEeC----CCCCHHHHHHHHHHHHhcccccccccccceEEeeecccCHhhHHHHHHh
Confidence 348999999999999999999887754 22223333333222222111 011 1111222233334444444
Q ss_pred ---cCCCeEecCCCchHH-HHhccCCC--CCHHHHHHHHHHHHHcCCc-eeecEEeecCCCHHHHHHHHHHHhcCCCCCC
Q 022946 193 ---AGLTAYNHNLDTSRE-FYSKIITT--RSYDERLETLKHVREAGIN-VCSGGIIGLGEAEEDRVGLLHTLATLPTHPE 265 (289)
Q Consensus 193 ---aG~~~v~i~let~~~-~~~~i~~~--~~~~~~~~~i~~~~~~Gi~-v~~~~i~Glget~ed~~~~l~~l~~l~~~~~ 265 (289)
+|.++|.+.+-+.+. ...+++.. ...+...+.++.+++.|+. +..+.-.+.--+.+.+.+.++.+.+. +++
T Consensus 177 ~~~a~~~~V~i~i~~Sd~h~~~kl~~s~ee~l~~~~~~V~~Ak~~G~~~v~f~~EDa~Rtd~efl~~~~~~a~~~--Gad 254 (503)
T PLN03228 177 LKYAKRPRILAFTSTSDIHMKYKLKKTKEEVIEMAVSSIRYAKSLGFHDIQFGCEDGGRSDKEFLCKILGEAIKA--GAT 254 (503)
T ss_pred hcccCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCceEEeccccccccCHHHHHHHHHHHHhc--CCC
Confidence 477888877766632 23344332 3467777888899999985 43333222222345567777777777 455
Q ss_pred eee
Q 022946 266 SVP 268 (289)
Q Consensus 266 ~v~ 268 (289)
.+.
T Consensus 255 ~I~ 257 (503)
T PLN03228 255 SVG 257 (503)
T ss_pred EEE
Confidence 543
No 191
>COG0119 LeuA Isopropylmalate/homocitrate/citramalate synthases [Amino acid transport and metabolism]
Probab=95.48 E-value=0.62 Score=42.78 Aligned_cols=133 Identities=14% Similarity=0.165 Sum_probs=86.2
Q ss_pred CCCCHHHHHHHHHHHHHcCCcEEEEecccCCCCCCchhHHHHHHHHHHHH-hcCceEEEe-CC--CCCHHHHHHHHHcCC
Q 022946 120 KLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIR-DMGMEVCCT-LG--MLEKHQAIELKKAGL 195 (289)
Q Consensus 120 ~~~~~eei~~~~~~~~~~g~~~i~i~~~~~~~~ge~~~~~~l~e~i~~ik-~~~~~i~~~-~g--~l~~e~l~~L~~aG~ 195 (289)
-.++.|+-++.++.+.+.|++.|..+... .. +.-.+.++.+. ..+..+.+. .+ ....+.++.+.++|+
T Consensus 19 ~~~s~e~Ki~Ia~~Ld~lGv~~IE~g~p~----~s----~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ea~~~a~~ 90 (409)
T COG0119 19 VSFSVEEKIRIAKALDDLGVDYIEAGFPV----AS----PGDFEFVRAIAEKAGLFICALIAALARAIKRDIEALLEAGV 90 (409)
T ss_pred CcCCHHHHHHHHHHHHHcCCCEEEEeCCc----CC----hhhHHHHHHHHHhcCcccchhhhhhHHhHHhhHHHHHhCCC
Confidence 34899999999999999999998765421 11 22233333333 223211111 11 133457899999999
Q ss_pred CeEecCCCchHH-HHhccCC--CCCHHHHHHHHHHHHHcCCceeecEEeecCCCHHHHHHHHHHHhcC
Q 022946 196 TAYNHNLDTSRE-FYSKIIT--TRSYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHTLATL 260 (289)
Q Consensus 196 ~~v~i~let~~~-~~~~i~~--~~~~~~~~~~i~~~~~~Gi~v~~~~i~Glget~ed~~~~l~~l~~l 260 (289)
+.+.+-+.+.+- ...+++. ....+...+.++.+++.|+.+..+..-...-+++.+.+.++.+...
T Consensus 91 ~~i~if~~tSd~h~~~~~~~t~~e~l~~~~~~v~ya~~~g~~~~~~~Ed~~rt~~~~l~~~~~~~~~~ 158 (409)
T COG0119 91 DRIHIFIATSDLHLRYKLKKTREEVLERAVDAVEYARDHGLEVRFSAEDATRTDPEFLAEVVKAAIEA 158 (409)
T ss_pred CEEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEEEEeeccccCCHHHHHHHHHHHHHc
Confidence 999988877733 3333332 2356777888999999998877555554566777888888887765
No 192
>PRK14041 oxaloacetate decarboxylase; Provisional
Probab=95.47 E-value=0.54 Score=43.90 Aligned_cols=130 Identities=12% Similarity=0.086 Sum_probs=77.2
Q ss_pred CCCHHHHHHHHHHHHHcCCcEEEEecccCCC-----CCCchhHHHHHHHHHHHHhc--CceEEE--e----CCC--CC--
Q 022946 121 LMTKDAVMQAAQKAKEAGSTRFCMGAAWRDT-----IGRKTNFNQILEYVKDIRDM--GMEVCC--T----LGM--LE-- 183 (289)
Q Consensus 121 ~~~~eei~~~~~~~~~~g~~~i~i~~~~~~~-----~ge~~~~~~l~e~i~~ik~~--~~~i~~--~----~g~--l~-- 183 (289)
.++.++.+..++.+.+.|+..+-+.|+.... .. +.. .+.++.+++. +..+.. . .|. ..
T Consensus 21 ~~~t~dkl~Ia~~Ld~~Gv~~IE~~ggatfd~~~~Fl~-e~p----~e~l~~l~~~~~~~~l~~l~r~~N~~G~~~~~dD 95 (467)
T PRK14041 21 RMRTEDMLPALEAFDRMGFYSMEVWGGATFDVCVRFLN-ENP----WERLKEIRKRLKNTKIQMLLRGQNLVGYRHYADD 95 (467)
T ss_pred cCCHHHHHHHHHHHHHcCCCEEEecCCccchhhhcccC-CCH----HHHHHHHHHhCCCCEEEEEeccccccCcccccch
Confidence 4899999999999999999999885542211 12 122 3333333321 233211 1 122 12
Q ss_pred --HHHHHHHHHcCCCeEecCCCchHHHHhccCCCCCHHHHHHHHHHHHHcCCceeecEEe--ecCCCHHHHHHHHHHHhc
Q 022946 184 --KHQAIELKKAGLTAYNHNLDTSREFYSKIITTRSYDERLETLKHVREAGINVCSGGII--GLGEAEEDRVGLLHTLAT 259 (289)
Q Consensus 184 --~e~l~~L~~aG~~~v~i~let~~~~~~~i~~~~~~~~~~~~i~~~~~~Gi~v~~~~i~--Glget~ed~~~~l~~l~~ 259 (289)
+..++...++|++.+.+..-.. ..+....+++.+++.|..+...+-+ +-..+.+.+.+.++.+.+
T Consensus 96 vv~~fv~~A~~~Gvd~irif~~ln-----------d~~n~~~~i~~ak~~G~~v~~~i~~t~~p~~t~e~~~~~a~~l~~ 164 (467)
T PRK14041 96 VVELFVKKVAEYGLDIIRIFDALN-----------DIRNLEKSIEVAKKHGAHVQGAISYTVSPVHTLEYYLEFARELVD 164 (467)
T ss_pred hhHHHHHHHHHCCcCEEEEEEeCC-----------HHHHHHHHHHHHHHCCCEEEEEEEeccCCCCCHHHHHHHHHHHHH
Confidence 2336777788999887655332 1345677778888888766544433 224566777777777777
Q ss_pred CCCCCCeee
Q 022946 260 LPTHPESVP 268 (289)
Q Consensus 260 l~~~~~~v~ 268 (289)
. +.+.+.
T Consensus 165 ~--Gad~I~ 171 (467)
T PRK14041 165 M--GVDSIC 171 (467)
T ss_pred c--CCCEEE
Confidence 7 355544
No 193
>PRK14040 oxaloacetate decarboxylase; Provisional
Probab=95.42 E-value=0.98 Score=43.58 Aligned_cols=135 Identities=16% Similarity=0.127 Sum_probs=81.7
Q ss_pred CCCHHHHHHHHHHHHHcCCcEEEEecccCCC-----CCCchhHHHHHHHHHHHHhcCceEEEe----CCC------CCHH
Q 022946 121 LMTKDAVMQAAQKAKEAGSTRFCMGAAWRDT-----IGRKTNFNQILEYVKDIRDMGMEVCCT----LGM------LEKH 185 (289)
Q Consensus 121 ~~~~eei~~~~~~~~~~g~~~i~i~~~~~~~-----~ge~~~~~~l~e~i~~ik~~~~~i~~~----~g~------l~~e 185 (289)
.++.++.+..+..+.+.|+..+-+.||..+. .++ ..++.+..+.+.+.+..+..... .|+ .-.+
T Consensus 23 r~~~~d~l~ia~~ld~~G~~siE~~GGatf~~~~~~~~e-~p~e~lr~l~~~~~~~~lqml~Rg~n~vg~~~ypddvv~~ 101 (593)
T PRK14040 23 RLRLDDMLPIAAKLDKVGYWSLESWGGATFDACIRFLGE-DPWERLRELKKAMPNTPQQMLLRGQNLLGYRHYADDVVER 101 (593)
T ss_pred ccCHHHHHHHHHHHHHcCCCEEEecCCcchhhhccccCC-CHHHHHHHHHHhCCCCeEEEEecCcceeccccCcHHHHHH
Confidence 4789999999999999999999886542222 232 23344444433333333322222 122 1234
Q ss_pred HHHHHHHcCCCeEecCCCchHHHHhccCCCCCHHHHHHHHHHHHHcCCceeecEE--eecCCCHHHHHHHHHHHhcCCCC
Q 022946 186 QAIELKKAGLTAYNHNLDTSREFYSKIITTRSYDERLETLKHVREAGINVCSGGI--IGLGEAEEDRVGLLHTLATLPTH 263 (289)
Q Consensus 186 ~l~~L~~aG~~~v~i~let~~~~~~~i~~~~~~~~~~~~i~~~~~~Gi~v~~~~i--~Glget~ed~~~~l~~l~~l~~~ 263 (289)
.++...++|++.+.+.. +. ...+....+++.+++.|..+...+- ..-.+|.+.+.+.++.+.+. +
T Consensus 102 ~v~~a~~~Gid~~rifd-~l----------nd~~~~~~ai~~ak~~G~~~~~~i~yt~~p~~~~~~~~~~a~~l~~~--G 168 (593)
T PRK14040 102 FVERAVKNGMDVFRVFD-AM----------NDPRNLETALKAVRKVGAHAQGTLSYTTSPVHTLQTWVDLAKQLEDM--G 168 (593)
T ss_pred HHHHHHhcCCCEEEEee-eC----------CcHHHHHHHHHHHHHcCCeEEEEEEEeeCCccCHHHHHHHHHHHHHc--C
Confidence 47778888999888763 11 2245677788888888886433332 23356777777777777777 4
Q ss_pred CCeeee
Q 022946 264 PESVPI 269 (289)
Q Consensus 264 ~~~v~i 269 (289)
.+.+.+
T Consensus 169 ad~i~i 174 (593)
T PRK14040 169 VDSLCI 174 (593)
T ss_pred CCEEEE
Confidence 555543
No 194
>PRK08005 epimerase; Validated
Probab=95.19 E-value=1.2 Score=37.01 Aligned_cols=97 Identities=11% Similarity=-0.035 Sum_probs=59.8
Q ss_pred CHHHHHHHHHHHHHcCCcEEEE-ecccCCCCCCchhHHHHHHHHHHHHhcCceEEEeCCC-CCHHHHHHHHHcCCCeEec
Q 022946 123 TKDAVMQAAQKAKEAGSTRFCM-GAAWRDTIGRKTNFNQILEYVKDIRDMGMEVCCTLGM-LEKHQAIELKKAGLTAYNH 200 (289)
Q Consensus 123 ~~eei~~~~~~~~~~g~~~i~i-~~~~~~~~ge~~~~~~l~e~i~~ik~~~~~i~~~~g~-l~~e~l~~L~~aG~~~v~i 200 (289)
+...+.++++++.+.|++.+++ ..++. +...-..-..+++.++......+++ +.-. -++..++.+.++|.+.|.+
T Consensus 11 d~~~l~~el~~l~~~g~d~lHiDvMDG~-FVPN~tfG~~~i~~l~~~t~~~~Dv--HLMv~~P~~~i~~~~~~gad~It~ 87 (210)
T PRK08005 11 DPLRYAEALTALHDAPLGSLHLDIEDTS-FINNITFGMKTIQAVAQQTRHPLSF--HLMVSSPQRWLPWLAAIRPGWIFI 87 (210)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEeccCCC-cCCccccCHHHHHHHHhcCCCCeEE--EeccCCHHHHHHHHHHhCCCEEEE
Confidence 4567788888898999999887 22222 2111112245555555432223333 3222 2456789999999999999
Q ss_pred CCCchHHHHhccCCCCCHHHHHHHHHHHHHcCCce
Q 022946 201 NLDTSREFYSKIITTRSYDERLETLKHVREAGINV 235 (289)
Q Consensus 201 ~let~~~~~~~i~~~~~~~~~~~~i~~~~~~Gi~v 235 (289)
..|+. ....+.++.+|+.|+++
T Consensus 88 H~Ea~-------------~~~~~~l~~Ik~~G~k~ 109 (210)
T PRK08005 88 HAESV-------------QNPSEILADIRAIGAKA 109 (210)
T ss_pred cccCc-------------cCHHHHHHHHHHcCCcE
Confidence 99863 12345677777778764
No 195
>TIGR01496 DHPS dihydropteroate synthase. This model represents dihydropteroate synthase, the enzyme that catalyzes the second to last step in folic acid biosynthesis. The gene is usually designated folP (folic acid biosynthsis) or sul (sulfanilamide resistance). This model represents one branch of the family of pterin-binding enzymes (pfam00809) and of a cluster of dihydropteroate synthase and related enzymes (COG0294). Other members of pfam00809 and COG0294 are represented by TIGR00284.
Probab=95.11 E-value=1.9 Score=37.02 Aligned_cols=139 Identities=17% Similarity=0.242 Sum_probs=76.8
Q ss_pred CCCCHHHHHHHHHHHHHcCCcEEEEecccCCCCCC----chhHHHHHHHHHHHHhc-CceEEEeCCCCCHHHHHHHHHcC
Q 022946 120 KLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGR----KTNFNQILEYVKDIRDM-GMEVCCTLGMLEKHQAIELKKAG 194 (289)
Q Consensus 120 ~~~~~eei~~~~~~~~~~g~~~i~i~~~~~~~~ge----~~~~~~l~e~i~~ik~~-~~~i~~~~g~l~~e~l~~L~~aG 194 (289)
...+++++++.++...+.|++-|-+++....+... ....+++..+++.+++. ++.+. ....+.+.+++-.++|
T Consensus 18 ~~~~~~~~~~~a~~~~~~GA~iIDIG~~st~p~~~~i~~~~E~~rl~~~v~~~~~~~~~pls--iDT~~~~vi~~al~~G 95 (257)
T TIGR01496 18 RFLSVDKAVAHAERMLEEGADIIDVGGESTRPGADRVSPEEELNRVVPVIKALRDQPDVPIS--VDTYRAEVARAALEAG 95 (257)
T ss_pred CCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCeEE--EeCCCHHHHHHHHHcC
Confidence 33688999999999999999988886533323211 12445677777777643 55442 2334455554444455
Q ss_pred CCeEe-cCCCc---hHHHHhccC-----------C---------CCCHHH----HHHHHHHHHHcCCc---eeecEEeec
Q 022946 195 LTAYN-HNLDT---SREFYSKII-----------T---------TRSYDE----RLETLKHVREAGIN---VCSGGIIGL 243 (289)
Q Consensus 195 ~~~v~-i~let---~~~~~~~i~-----------~---------~~~~~~----~~~~i~~~~~~Gi~---v~~~~i~Gl 243 (289)
.+.|+ ++.+. .-++.++.. + ....++ ..+.++.+.+.|++ +..+-.+|+
T Consensus 96 ~~iINsis~~~~~~~~~l~~~~~~~vV~m~~~g~p~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Gi~~~~iilDPg~gf 175 (257)
T TIGR01496 96 ADIINDVSGGQDPAMLEVAAEYGVPLVLMHMRGTPRTMQENPHYEDVVEEVLRFLEARAEELVAAGVAAERIILDPGIGF 175 (257)
T ss_pred CCEEEECCCCCCchhHHHHHHcCCcEEEEeCCCCCcccccCCCcccHHHHHHHHHHHHHHHHHHcCCCHHHEEEECCCCc
Confidence 55544 22221 101111100 0 001222 34456667889994 555555677
Q ss_pred CCCHHHHHHHHHHHhcC
Q 022946 244 GEAEEDRVGLLHTLATL 260 (289)
Q Consensus 244 get~ed~~~~l~~l~~l 260 (289)
+.+.++-.++++.++.+
T Consensus 176 ~ks~~~~~~~l~~i~~l 192 (257)
T TIGR01496 176 GKTPEHNLELLKHLEEF 192 (257)
T ss_pred ccCHHHHHHHHHHHHHH
Confidence 66777666666666554
No 196
>TIGR01108 oadA oxaloacetate decarboxylase alpha subunit. This model describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea. The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane.
Probab=95.10 E-value=1.1 Score=43.24 Aligned_cols=134 Identities=10% Similarity=0.109 Sum_probs=79.0
Q ss_pred CCCHHHHHHHHHHHHHcCCcEEEEecccCCC-----CCCchhHHHHHHHHHHHHhcCceEEEe----CCC------CCHH
Q 022946 121 LMTKDAVMQAAQKAKEAGSTRFCMGAAWRDT-----IGRKTNFNQILEYVKDIRDMGMEVCCT----LGM------LEKH 185 (289)
Q Consensus 121 ~~~~eei~~~~~~~~~~g~~~i~i~~~~~~~-----~ge~~~~~~l~e~i~~ik~~~~~i~~~----~g~------l~~e 185 (289)
.++.++.+..++.+.+.|+..+-+.||..+. .++ ..++.+..+-+.+....+..... .|+ +.++
T Consensus 17 ~~~t~dkl~ia~~L~~~Gv~~IE~~GGatfd~~~~f~~e-~~~e~l~~l~~~~~~~~l~~L~Rg~N~~G~~~ypddvv~~ 95 (582)
T TIGR01108 17 RMRTEDMLPIAEKLDDVGYWSLEVWGGATFDACIRFLNE-DPWERLRELKKALPNTPLQMLLRGQNLLGYRHYADDVVER 95 (582)
T ss_pred cCCHHHHHHHHHHHHHcCCCEEEecCCcccccccccCCC-CHHHHHHHHHHhCCCCEEEEEEccccccccccCchhhHHH
Confidence 4899999999999999999999886543222 122 23333322222222222222221 132 2345
Q ss_pred HHHHHHHcCCCeEecCCCchHHHHhccCCCCCHHHHHHHHHHHHHcCCceeecEEeec--CCCHHHHHHHHHHHhcCCCC
Q 022946 186 QAIELKKAGLTAYNHNLDTSREFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGL--GEAEEDRVGLLHTLATLPTH 263 (289)
Q Consensus 186 ~l~~L~~aG~~~v~i~let~~~~~~~i~~~~~~~~~~~~i~~~~~~Gi~v~~~~i~Gl--get~ed~~~~l~~l~~l~~~ 263 (289)
.++...++|++.+.+..-.. ..+....+++.+++.|+.+...+-+-. -.+.+.+.+.++.+.++ +
T Consensus 96 ~v~~a~~~Gvd~irif~~ln-----------d~~n~~~~i~~ak~~G~~v~~~i~~t~~p~~~~~~~~~~~~~~~~~--G 162 (582)
T TIGR01108 96 FVKKAVENGMDVFRIFDALN-----------DPRNLQAAIQAAKKHGAHAQGTISYTTSPVHTLETYLDLAEELLEM--G 162 (582)
T ss_pred HHHHHHHCCCCEEEEEEecC-----------cHHHHHHHHHHHHHcCCEEEEEEEeccCCCCCHHHHHHHHHHHHHc--C
Confidence 67788889999877654221 124567777888888877665533322 24667777777777777 3
Q ss_pred CCeee
Q 022946 264 PESVP 268 (289)
Q Consensus 264 ~~~v~ 268 (289)
.+.+.
T Consensus 163 ad~I~ 167 (582)
T TIGR01108 163 VDSIC 167 (582)
T ss_pred CCEEE
Confidence 55543
No 197
>PRK09282 pyruvate carboxylase subunit B; Validated
Probab=95.01 E-value=1.1 Score=43.30 Aligned_cols=135 Identities=12% Similarity=0.075 Sum_probs=78.5
Q ss_pred CCCHHHHHHHHHHHHHcCCcEEEEecccCCCCCCchhHHHHHHHHHHHHhc--Cce--EEEe----CCC------CCHHH
Q 022946 121 LMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDM--GME--VCCT----LGM------LEKHQ 186 (289)
Q Consensus 121 ~~~~eei~~~~~~~~~~g~~~i~i~~~~~~~~ge~~~~~~l~e~i~~ik~~--~~~--i~~~----~g~------l~~e~ 186 (289)
.++.++.+..+..+.+.|+..+-+.||..+...-....+.-.+.++.+++. +.. .... .|+ +.++.
T Consensus 22 r~~t~d~l~ia~~l~~~G~~~iE~~ggatfd~~~rfl~edp~e~l~~l~~~~~~~~l~~l~Rg~N~~gy~~ypd~vv~~~ 101 (592)
T PRK09282 22 RMRTEDMLPIAEKLDKVGFWSLEVWGGATFDVCIRYLNEDPWERLRKLKKALPNTPLQMLLRGQNLVGYRHYPDDVVEKF 101 (592)
T ss_pred cCCHHHHHHHHHHHHHcCCCEEEecCCccchhhcccCCccHHHHHHHHHHhCCCCEEEEEeccccccccccccchhhHHH
Confidence 378999999999999999999988654321110000112334444444422 222 2211 121 24555
Q ss_pred HHHHHHcCCCeEecCCCchHHHHhccCCCCCHHHHHHHHHHHHHcCCceeecEEeec--CCCHHHHHHHHHHHhcCCCCC
Q 022946 187 AIELKKAGLTAYNHNLDTSREFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGL--GEAEEDRVGLLHTLATLPTHP 264 (289)
Q Consensus 187 l~~L~~aG~~~v~i~let~~~~~~~i~~~~~~~~~~~~i~~~~~~Gi~v~~~~i~Gl--get~ed~~~~l~~l~~l~~~~ 264 (289)
++...++|++.+.+..-. ........+++.+++.|..+...+-+-. ..|.+.+.+.++.+.+. +.
T Consensus 102 v~~A~~~Gvd~irif~~l-----------nd~~n~~~~i~~ak~~G~~v~~~i~~t~~p~~t~~~~~~~a~~l~~~--Ga 168 (592)
T PRK09282 102 VEKAAENGIDIFRIFDAL-----------NDVRNMEVAIKAAKKAGAHVQGTISYTTSPVHTIEKYVELAKELEEM--GC 168 (592)
T ss_pred HHHHHHCCCCEEEEEEec-----------ChHHHHHHHHHHHHHcCCEEEEEEEeccCCCCCHHHHHHHHHHHHHc--CC
Confidence 778888899987765422 1235566777777777776654443322 35667777777777776 35
Q ss_pred Ceee
Q 022946 265 ESVP 268 (289)
Q Consensus 265 ~~v~ 268 (289)
+.+.
T Consensus 169 d~I~ 172 (592)
T PRK09282 169 DSIC 172 (592)
T ss_pred CEEE
Confidence 5544
No 198
>PRK12581 oxaloacetate decarboxylase; Provisional
Probab=94.95 E-value=1.5 Score=40.93 Aligned_cols=133 Identities=8% Similarity=0.063 Sum_probs=74.6
Q ss_pred CCHHHHHHHHHHHHHcCCcEEEEecccCCC-----CCCchhHHHHHHHHHHHHhcCceEEEe----CCCC------CHHH
Q 022946 122 MTKDAVMQAAQKAKEAGSTRFCMGAAWRDT-----IGRKTNFNQILEYVKDIRDMGMEVCCT----LGML------EKHQ 186 (289)
Q Consensus 122 ~~~eei~~~~~~~~~~g~~~i~i~~~~~~~-----~ge~~~~~~l~e~i~~ik~~~~~i~~~----~g~l------~~e~ 186 (289)
++.++++..+..+.+.|+..+.+.||.... ..| ..++++..+-+.+++..+..... .|+. .+..
T Consensus 32 ~~t~d~l~ia~~ld~~G~~siE~wGGAtfd~~~rfl~e-dpwerlr~~r~~~~nt~lqmLlRG~n~vgy~~ypddvv~~f 110 (468)
T PRK12581 32 LSIEDMLPVLTILDKIGYYSLECWGGATFDACIRFLNE-DPWERLRTLKKGLPNTRLQMLLRGQNLLGYRHYADDIVDKF 110 (468)
T ss_pred CCHHHHHHHHHHHHhcCCCEEEecCCcchhhhhcccCC-CHHHHHHHHHHhCCCCceeeeeccccccCccCCcchHHHHH
Confidence 789999999999999999999886543222 222 24455544444454333332222 2322 1233
Q ss_pred HHHHHHcCCCeEecCCCchHHHHhccCCCCCHHHHHHHHHHHHHcCCceeecEEeec--CCCHHHHHHHHHHHhcCCCCC
Q 022946 187 AIELKKAGLTAYNHNLDTSREFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGL--GEAEEDRVGLLHTLATLPTHP 264 (289)
Q Consensus 187 l~~L~~aG~~~v~i~let~~~~~~~i~~~~~~~~~~~~i~~~~~~Gi~v~~~~i~Gl--get~ed~~~~l~~l~~l~~~~ 264 (289)
++...+.|++.+.+.- . -...+....+++.+++.|..+...+.+-. ..|.+-..+.++.+.++ +.
T Consensus 111 v~~a~~~Gidi~Rifd--------~---lnd~~n~~~ai~~ak~~G~~~~~~i~yt~sp~~t~~y~~~~a~~l~~~--Ga 177 (468)
T PRK12581 111 ISLSAQNGIDVFRIFD--------A---LNDPRNIQQALRAVKKTGKEAQLCIAYTTSPVHTLNYYLSLVKELVEM--GA 177 (468)
T ss_pred HHHHHHCCCCEEEEcc--------c---CCCHHHHHHHHHHHHHcCCEEEEEEEEEeCCcCcHHHHHHHHHHHHHc--CC
Confidence 6666778998776532 1 13456666677777777765443222211 34455566666666666 34
Q ss_pred Ceee
Q 022946 265 ESVP 268 (289)
Q Consensus 265 ~~v~ 268 (289)
+.+.
T Consensus 178 d~I~ 181 (468)
T PRK12581 178 DSIC 181 (468)
T ss_pred CEEE
Confidence 4443
No 199
>PRK14057 epimerase; Provisional
Probab=94.76 E-value=0.85 Score=38.91 Aligned_cols=127 Identities=13% Similarity=-0.016 Sum_probs=73.2
Q ss_pred CHHHHHHHHHHHHHcCCcEEEE-ecccCCCCCCchhHHHHHHHHHHHHhcCceEEEeCCC-CCHHHHHHHHHcCCCeEec
Q 022946 123 TKDAVMQAAQKAKEAGSTRFCM-GAAWRDTIGRKTNFNQILEYVKDIRDMGMEVCCTLGM-LEKHQAIELKKAGLTAYNH 200 (289)
Q Consensus 123 ~~eei~~~~~~~~~~g~~~i~i-~~~~~~~~ge~~~~~~l~e~i~~ik~~~~~i~~~~g~-l~~e~l~~L~~aG~~~v~i 200 (289)
+.-.+.++++.+.+.|++.+++ ..++. +...-..-..+++.++. ...+++ +.-. -.+..++.+.++|.+.|.+
T Consensus 30 D~~~L~~el~~l~~~g~d~lHiDVMDG~-FVPNitfGp~~i~~i~~--~~p~Dv--HLMV~~P~~~i~~~~~aGad~It~ 104 (254)
T PRK14057 30 QWIALHRYLQQLEALNQPLLHLDLMDGQ-FCPQFTVGPWAVGQLPQ--TFIKDV--HLMVADQWTAAQACVKAGAHCITL 104 (254)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEeccCCc-cCCccccCHHHHHHhcc--CCCeeE--EeeeCCHHHHHHHHHHhCCCEEEE
Confidence 4567888888998999999888 22221 11111122444444432 222232 2222 2456789999999999999
Q ss_pred CCCchHHHHhccCCCCCHHHHHHHHHHHHHcCCc-------eeecEEeecCCCHHHHHHHHHHHhcCCCCCCeeeeccce
Q 022946 201 NLDTSREFYSKIITTRSYDERLETLKHVREAGIN-------VCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALL 273 (289)
Q Consensus 201 ~let~~~~~~~i~~~~~~~~~~~~i~~~~~~Gi~-------v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~i~~~~ 273 (289)
..|+. ....++++.+|+.|++ +.+++-+..+-..+.+...+.. .+.|-++.-.
T Consensus 105 H~Ea~-------------~~~~~~l~~Ir~~G~k~~~~~~~~kaGlAlnP~Tp~e~i~~~l~~-------vD~VLvMtV~ 164 (254)
T PRK14057 105 QAEGD-------------IHLHHTLSWLGQQTVPVIGGEMPVIRGISLCPATPLDVIIPILSD-------VEVIQLLAVN 164 (254)
T ss_pred eeccc-------------cCHHHHHHHHHHcCCCcccccccceeEEEECCCCCHHHHHHHHHh-------CCEEEEEEEC
Confidence 99863 1235667777777764 3445555444444444444432 3555555544
Q ss_pred e
Q 022946 274 A 274 (289)
Q Consensus 274 p 274 (289)
|
T Consensus 165 P 165 (254)
T PRK14057 165 P 165 (254)
T ss_pred C
Confidence 4
No 200
>cd00423 Pterin_binding Pterin binding enzymes. This family includes dihydropteroate synthase (DHPS) and cobalamin-dependent methyltransferases such as methyltetrahydrofolate, corrinoid iron-sulfur protein methyltransferase (MeTr) and methionine synthase (MetH). DHPS, a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS. Cobalamin-dependent methyltransferases catalyze the transfer of a methyl group via a methyl- cob(III)amide intermediate. These include MeTr, a functional heterodimer, and the folate binding domain of MetH.
Probab=94.74 E-value=1.8 Score=37.22 Aligned_cols=135 Identities=18% Similarity=0.249 Sum_probs=77.0
Q ss_pred CCHHHHHHHHHHHHHcCCcEEEEecccCCCCC----CchhHHHHHHHHHHHHhc-CceEEEeCCCCCHHHHHHHHHcCCC
Q 022946 122 MTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIG----RKTNFNQILEYVKDIRDM-GMEVCCTLGMLEKHQAIELKKAGLT 196 (289)
Q Consensus 122 ~~~eei~~~~~~~~~~g~~~i~i~~~~~~~~g----e~~~~~~l~e~i~~ik~~-~~~i~~~~g~l~~e~l~~L~~aG~~ 196 (289)
.+.+.+++.++...+.|.+-|-+++....|.. .....+++..+++.+++. ++.+ +....+.+.+++-.++|.+
T Consensus 21 ~~~~~~~~~a~~~~~~GAdiIDvG~~st~p~~~~~~~~~E~~rl~~~v~~l~~~~~~pi--SIDT~~~~v~~aaL~~g~~ 98 (258)
T cd00423 21 LSLDKALEHARRMVEEGADIIDIGGESTRPGAEPVSVEEELERVIPVLRALAGEPDVPI--SVDTFNAEVAEAALKAGAD 98 (258)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEECCCcCCCCCCcCCHHHHHHHHHHHHHHHHhcCCCeE--EEeCCcHHHHHHHHHhCCC
Confidence 58899999999999999998888765443332 234557788888887743 4443 3334445555554455544
Q ss_pred eEe-cCCCch-HHHHh---ccC--------C------------CCC----HHHHHHHHHHHHHcCC---ceeecEEeecC
Q 022946 197 AYN-HNLDTS-REFYS---KII--------T------------TRS----YDERLETLKHVREAGI---NVCSGGIIGLG 244 (289)
Q Consensus 197 ~v~-i~let~-~~~~~---~i~--------~------------~~~----~~~~~~~i~~~~~~Gi---~v~~~~i~Glg 244 (289)
.|+ ++.+.. +++.+ +.. . ... .+...+.++.+.+.|+ ++..+-.+|++
T Consensus 99 iINdis~~~~~~~~~~l~~~~~~~vV~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Gi~~~~IilDPg~g~~ 178 (258)
T cd00423 99 IINDVSGGRGDPEMAPLAAEYGAPVVLMHMDGTPQTMQNNPYYADVVDEVVEFLEERVEAATEAGIPPEDIILDPGIGFG 178 (258)
T ss_pred EEEeCCCCCCChHHHHHHHHcCCCEEEECcCCCCcccccCCCcchHHHHHHHHHHHHHHHHHHcCCCHHHEEEeCCCCcc
Confidence 443 333222 22211 100 0 111 3455566677888997 36667677774
Q ss_pred CCHHHHHHHHHHHh
Q 022946 245 EAEEDRVGLLHTLA 258 (289)
Q Consensus 245 et~ed~~~~l~~l~ 258 (289)
-+.++-..+++.+.
T Consensus 179 k~~~~~~~~l~~i~ 192 (258)
T cd00423 179 KTEEHNLELLRRLD 192 (258)
T ss_pred CCHHHHHHHHHHHH
Confidence 35554444444443
No 201
>PRK09722 allulose-6-phosphate 3-epimerase; Provisional
Probab=94.70 E-value=1.9 Score=36.25 Aligned_cols=97 Identities=14% Similarity=0.108 Sum_probs=57.1
Q ss_pred CHHHHHHHHHHHHHcCCcEEEE-ecccCCCCCCchhHHHHHHHHHHHHhcCceEEEeCCC-CCHHHHHHHHHcCCCeEec
Q 022946 123 TKDAVMQAAQKAKEAGSTRFCM-GAAWRDTIGRKTNFNQILEYVKDIRDMGMEVCCTLGM-LEKHQAIELKKAGLTAYNH 200 (289)
Q Consensus 123 ~~eei~~~~~~~~~~g~~~i~i-~~~~~~~~ge~~~~~~l~e~i~~ik~~~~~i~~~~g~-l~~e~l~~L~~aG~~~v~i 200 (289)
+.-.+.++++.+.. |++.+++ ..++. +...-..-..+++.++......+++ +.-. -....++.+.++|.+.|.+
T Consensus 13 d~~~l~~el~~l~~-g~d~lH~DiMDG~-FVPN~tfg~~~i~~ir~~t~~~~Dv--HLMv~~P~~~i~~~~~aGad~it~ 88 (229)
T PRK09722 13 DLLKFKEQIEFLNS-KADYFHIDIMDGH-FVPNLTLSPFFVSQVKKLASKPLDV--HLMVTDPQDYIDQLADAGADFITL 88 (229)
T ss_pred CHHHHHHHHHHHHh-CCCEEEEecccCc-cCCCcccCHHHHHHHHhcCCCCeEE--EEEecCHHHHHHHHHHcCCCEEEE
Confidence 34566777777766 8888887 22221 1111112244555554432222333 2211 2466789999999999999
Q ss_pred CCCchHHHHhccCCCCCHHHHHHHHHHHHHcCCce
Q 022946 201 NLDTSREFYSKIITTRSYDERLETLKHVREAGINV 235 (289)
Q Consensus 201 ~let~~~~~~~i~~~~~~~~~~~~i~~~~~~Gi~v 235 (289)
..|+.. ....+.++.+|++|+++
T Consensus 89 H~Ea~~------------~~~~~~i~~Ik~~G~ka 111 (229)
T PRK09722 89 HPETIN------------GQAFRLIDEIRRAGMKV 111 (229)
T ss_pred CccCCc------------chHHHHHHHHHHcCCCE
Confidence 998631 12346777788888765
No 202
>PRK14024 phosphoribosyl isomerase A; Provisional
Probab=94.59 E-value=1.5 Score=37.17 Aligned_cols=74 Identities=15% Similarity=0.128 Sum_probs=52.6
Q ss_pred HHHHHHHHHHcCCcEEEEecccCCCCCCchhHHHHHHHHHHHH-hcCceEEEeCCCCCHHHHHHHHHcCCCeEecCCCch
Q 022946 127 VMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIR-DMGMEVCCTLGMLEKHQAIELKKAGLTAYNHNLDTS 205 (289)
Q Consensus 127 i~~~~~~~~~~g~~~i~i~~~~~~~~ge~~~~~~l~e~i~~ik-~~~~~i~~~~g~l~~e~l~~L~~aG~~~v~i~let~ 205 (289)
.++.++.+.+.|++++++..-+... |...++ ++++++. ..++++....|.-+.|.++.+..+|++.+.+|-...
T Consensus 34 p~~~a~~~~~~g~~~l~ivDLd~~~-g~~~n~----~~i~~i~~~~~~pv~vgGGirs~edv~~~l~~Ga~kvviGs~~l 108 (241)
T PRK14024 34 PLDAALAWQRDGAEWIHLVDLDAAF-GRGSNR----ELLAEVVGKLDVKVELSGGIRDDESLEAALATGCARVNIGTAAL 108 (241)
T ss_pred HHHHHHHHHHCCCCEEEEEeccccC-CCCccH----HHHHHHHHHcCCCEEEcCCCCCHHHHHHHHHCCCCEEEECchHh
Confidence 3445566778999999997643222 333333 5555554 347788888899999999999999999998876553
No 203
>cd00003 PNPsynthase Pyridoxine 5'-phosphate (PNP) synthase domain; pyridoxal 5'-phosphate is the active form of vitamin B6 that acts as an essential, ubiquitous coenzyme in amino acid metabolism. In bacteria, formation of pyridoxine 5'-phosphate is a step in the biosynthesis of vitamin B6. PNP synthase, a homooctameric enzyme, catalyzes the final step in PNP biosynthesis, the condensation of 1-amino-acetone 3-phosphate and 1-deoxy-D-xylulose 5-phosphate. PNP synthase adopts a TIM barrel topology, intersubunit contacts are mediated by three ''extra'' helices, generating a tetramer of symmetric dimers with shared active sites; the open state has been proposed to accept substrates and to release products, while most of the catalytic events are likely to occur in the closed state; a hydrophilic channel running through the center of the barrel was identified as the essential structural feature that enables PNP synthase to release water molecules produced during the reaction from the closed,
Probab=94.58 E-value=0.31 Score=40.77 Aligned_cols=120 Identities=15% Similarity=0.212 Sum_probs=79.7
Q ss_pred HHHHHHHHHHHHHcCCcEEEEe----------cccCCCCCCchhHHHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHc
Q 022946 124 KDAVMQAAQKAKEAGSTRFCMG----------AAWRDTIGRKTNFNQILEYVKDIRDMGMEVCCTLGMLEKHQAIELKKA 193 (289)
Q Consensus 124 ~eei~~~~~~~~~~g~~~i~i~----------~~~~~~~ge~~~~~~l~e~i~~ik~~~~~i~~~~g~l~~e~l~~L~~a 193 (289)
.+++++.+.+. ..+.++++ ||+ +. ....+.+.+.++.+++.|+.+..... -+.+.++.-++.
T Consensus 72 t~em~~ia~~~---kP~~vtLVPEkr~E~TTegGl-dv---~~~~~~l~~~i~~l~~~gI~VSLFiD-Pd~~qi~~A~~~ 143 (234)
T cd00003 72 TEEMLEIALEV---KPHQVTLVPEKREELTTEGGL-DV---AGQAEKLKPIIERLKDAGIRVSLFID-PDPEQIEAAKEV 143 (234)
T ss_pred CHHHHHHHHHC---CCCEEEECCCCCCCccCCccc-hh---hcCHHHHHHHHHHHHHCCCEEEEEeC-CCHHHHHHHHHh
Confidence 46666665544 44566664 222 11 13668899999999999998765543 568899999999
Q ss_pred CCCeEecCCCchHHHHhccCCCCCHHHHHHHHHHHHHcCCceeecEEeecCCCHHHHHHHHH
Q 022946 194 GLTAYNHNLDTSREFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLH 255 (289)
Q Consensus 194 G~~~v~i~let~~~~~~~i~~~~~~~~~~~~i~~~~~~Gi~v~~~~i~Glget~ed~~~~l~ 255 (289)
|.++|.+.-..+.+.+..-.....++.+.++.+.+++.|+.|+ .|+|=+.+.+.....
T Consensus 144 GAd~VELhTG~Ya~a~~~~~~~~el~~i~~aa~~a~~~GL~Vn----AGHgLny~Nv~~i~~ 201 (234)
T cd00003 144 GADRVELHTGPYANAYDKAEREAELERIAKAAKLARELGLGVN----AGHGLNYENVKPIAK 201 (234)
T ss_pred CcCEEEEechhhhcCCCchhHHHHHHHHHHHHHHHHHcCCEEe----cCCCCCHHHHHHHHh
Confidence 9999987665542222111111246778888888899999885 567777777655544
No 204
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.
Probab=94.51 E-value=0.95 Score=37.28 Aligned_cols=94 Identities=16% Similarity=0.130 Sum_probs=57.4
Q ss_pred CCHHHHHHHHHHHHHcCCcEEEEecccCCCCCCchhHHHHHHHHHHHHhc--CceEEEeCCCCC--HHHHHHHHHcCCCe
Q 022946 122 MTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDM--GMEVCCTLGMLE--KHQAIELKKAGLTA 197 (289)
Q Consensus 122 ~~~eei~~~~~~~~~~g~~~i~i~~~~~~~~ge~~~~~~l~e~i~~ik~~--~~~i~~~~g~l~--~e~l~~L~~aG~~~ 197 (289)
.+.++.++.++.+ +.|++.+-++. +.....-.+.++.+++. +..+....-.++ ...++.+.++|.+.
T Consensus 9 ~~~~~a~~~~~~l-~~~v~~iev~~--------~l~~~~g~~~i~~l~~~~~~~~i~~d~k~~d~~~~~~~~~~~~Gad~ 79 (206)
T TIGR03128 9 LDIEEALELAEKV-ADYVDIIEIGT--------PLIKNEGIEAVKEMKEAFPDRKVLADLKTMDAGEYEAEQAFAAGADI 79 (206)
T ss_pred CCHHHHHHHHHHc-ccCeeEEEeCC--------HHHHHhCHHHHHHHHHHCCCCEEEEEEeeccchHHHHHHHHHcCCCE
Confidence 4778888888888 77777665532 22333335566666533 223322211122 23689999999999
Q ss_pred EecCCCchHHHHhccCCCCCHHHHHHHHHHHHHcCCcee
Q 022946 198 YNHNLDTSREFYSKIITTRSYDERLETLKHVREAGINVC 236 (289)
Q Consensus 198 v~i~let~~~~~~~i~~~~~~~~~~~~i~~~~~~Gi~v~ 236 (289)
+.+..++. .....+.++.+++.|+++.
T Consensus 80 i~vh~~~~------------~~~~~~~i~~~~~~g~~~~ 106 (206)
T TIGR03128 80 VTVLGVAD------------DATIKGAVKAAKKHGKEVQ 106 (206)
T ss_pred EEEeccCC------------HHHHHHHHHHHHHcCCEEE
Confidence 98877652 1334567777888887663
No 205
>COG0084 TatD Mg-dependent DNase [DNA replication, recombination, and repair]
Probab=94.49 E-value=0.037 Score=47.37 Aligned_cols=49 Identities=14% Similarity=0.123 Sum_probs=42.8
Q ss_pred CCcccc-ccccccccccchHHHHHHHHHhcCCCCCCCHHHHHHhhCCChHHHH
Q 022946 19 SKKFLA-LHSSCSCYSASAAAIEAERTIREGPRHDWSKDDIKSIYDSPVLDLL 70 (289)
Q Consensus 19 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~ee~~~l~~~~~~~l~ 70 (289)
-+||++ .|.+|++|+|.++..+++.+++ -.+++.+|+...+..+...++
T Consensus 205 DsPyl~P~p~rGkrNeP~~v~~v~~~iAe---lk~~~~eeva~~t~~N~~~lf 254 (256)
T COG0084 205 DAPYLAPVPYRGKRNEPAYVRHVAEKLAE---LKGISAEEVAEITTENAKRLF 254 (256)
T ss_pred CCCCCCCcCCCCCCCCchHHHHHHHHHHH---HhCCCHHHHHHHHHHHHHHHh
Confidence 499999 7999999999999999999999 889999999988766555443
No 206
>PRK08883 ribulose-phosphate 3-epimerase; Provisional
Probab=94.47 E-value=2.4 Score=35.45 Aligned_cols=98 Identities=15% Similarity=0.126 Sum_probs=58.8
Q ss_pred CHHHHHHHHHHHHHcCCcEEEE-ecccCCCCCCchhHHHHHHHHHHHHhcCceEEEeCCC-CCHHHHHHHHHcCCCeEec
Q 022946 123 TKDAVMQAAQKAKEAGSTRFCM-GAAWRDTIGRKTNFNQILEYVKDIRDMGMEVCCTLGM-LEKHQAIELKKAGLTAYNH 200 (289)
Q Consensus 123 ~~eei~~~~~~~~~~g~~~i~i-~~~~~~~~ge~~~~~~l~e~i~~ik~~~~~i~~~~g~-l~~e~l~~L~~aG~~~v~i 200 (289)
+.-.+.++++.+.+.|++.+++ ..++. +...-.+-..+++.++... ..+.+.++.-. -....++.+.++|.+.+.+
T Consensus 10 d~~~l~~~i~~l~~~g~~~lH~DvmDG~-Fvpn~tfg~~~i~~i~~~~-~~~~~dvHLMv~~p~~~i~~~~~~gad~i~~ 87 (220)
T PRK08883 10 DFARLGEDVEKVLAAGADVVHFDVMDNH-YVPNLTFGAPICKALRDYG-ITAPIDVHLMVKPVDRIIPDFAKAGASMITF 87 (220)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEecccCc-ccCccccCHHHHHHHHHhC-CCCCEEEEeccCCHHHHHHHHHHhCCCEEEE
Confidence 4567788888888999999887 22221 2211122245555555431 12333333222 2456789999999999999
Q ss_pred CCCchHHHHhccCCCCCHHHHHHHHHHHHHcCCce
Q 022946 201 NLDTSREFYSKIITTRSYDERLETLKHVREAGINV 235 (289)
Q Consensus 201 ~let~~~~~~~i~~~~~~~~~~~~i~~~~~~Gi~v 235 (289)
..|+. +...+.++.+|+.|++.
T Consensus 88 H~Ea~-------------~~~~~~l~~ik~~g~k~ 109 (220)
T PRK08883 88 HVEAS-------------EHVDRTLQLIKEHGCQA 109 (220)
T ss_pred cccCc-------------ccHHHHHHHHHHcCCcE
Confidence 99873 12345566666666654
No 207
>PF03740 PdxJ: Pyridoxal phosphate biosynthesis protein PdxJ; InterPro: IPR004569 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. In Escherichia coli, the pdx genes involved in vitamin B6 have been characterised [, , ]. This entry represents PdxJ, which catalyses the condensation of 1-amino-3-oxo-4-(phosphohydroxy)propan-2-one and 1-deoxy-D-xylulose-5-phosphate to form pyridoxine-5'-phosphate. The product of the PdxJ reaction is then oxidized by PdxH to pyridoxal 5'-phosphate.; GO: 0008615 pyridoxine biosynthetic process, 0005737 cytoplasm; PDB: 3F4N_B 3O6D_A 3O6C_A 1M5W_G 1IXQ_D 1IXP_B 1IXN_A 1HO4_C 1HO1_A 1IXO_D ....
Probab=94.46 E-value=0.29 Score=41.12 Aligned_cols=117 Identities=15% Similarity=0.195 Sum_probs=70.0
Q ss_pred HHHHHHHHHHHHHcCCcEEEEec---------ccCCCCCCchhHHHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHcC
Q 022946 124 KDAVMQAAQKAKEAGSTRFCMGA---------AWRDTIGRKTNFNQILEYVKDIRDMGMEVCCTLGMLEKHQAIELKKAG 194 (289)
Q Consensus 124 ~eei~~~~~~~~~~g~~~i~i~~---------~~~~~~ge~~~~~~l~e~i~~ik~~~~~i~~~~g~l~~e~l~~L~~aG 194 (289)
.+++++.+...+. +.++++- +|-+. ....+.+.+.++.++..|+.+..... -+.+.++.-++.|
T Consensus 73 t~e~~~ia~~~kP---~~vtLVPE~r~e~TTegGldv---~~~~~~l~~~i~~L~~~gIrvSLFiD-P~~~qi~~A~~~G 145 (239)
T PF03740_consen 73 TEEMVDIALKVKP---DQVTLVPEKREELTTEGGLDV---AGNRDRLKPVIKRLKDAGIRVSLFID-PDPEQIEAAKELG 145 (239)
T ss_dssp SHHHHHHHHHH-----SEEEEE--SGGGBSTTSSB-T---CGGHHHHHHHHHHHHHTT-EEEEEE--S-HHHHHHHHHTT
T ss_pred CHHHHHHHHhCCc---CEEEECCCCCCCcCCCcCChh---hcCHHHHHHHHHHHHhCCCEEEEEeC-CCHHHHHHHHHcC
Confidence 3777777665554 5677752 11111 23578999999999999998765543 4588999999999
Q ss_pred CCeEecCCCchHHHHhccCCCCC--HHHHHHHHHHHHHcCCceeecEEeecCCCHHHHH
Q 022946 195 LTAYNHNLDTSREFYSKIITTRS--YDERLETLKHVREAGINVCSGGIIGLGEAEEDRV 251 (289)
Q Consensus 195 ~~~v~i~let~~~~~~~i~~~~~--~~~~~~~i~~~~~~Gi~v~~~~i~Glget~ed~~ 251 (289)
.++|.+.-..+.+.+..-..... ++.+.++.+.+++.|+.|+ .|+|=+.+.+.
T Consensus 146 ad~VELhTG~yA~a~~~~~~~~~ell~~l~~aa~~a~~lGL~Vn----AGHgL~y~N~~ 200 (239)
T PF03740_consen 146 ADRVELHTGPYANAFDDAEEAEEELLERLRDAARYAHELGLGVN----AGHGLNYDNVR 200 (239)
T ss_dssp -SEEEEETHHHHHHSSHHHHHHHHHHHHHHHHHHHHHHTT-EEE----EETT--TTTHH
T ss_pred CCEEEEehhHhhhhcCCHHHHHHHHHHHHHHHHHHHHHcCCEEe----cCCCCCHHHHH
Confidence 99998765444222211000111 5777888888899999886 45555544433
No 208
>TIGR00559 pdxJ pyridoxine 5'-phosphate synthase. PdxJ is required in the biosynthesis of pyridoxine (vitamin B6), a precursor to the enzyme cofactor pyridoxal phosphate. ECOCYC describes the predicted reaction equation as 1-amino-propan-2-one-3-phosphate + deoxyxylulose-5-phosphate = pyridoxine-5'-phosphate. The product of that reaction is oxidized by PdxH to pyridoxal 5'-phosphate.
Probab=94.43 E-value=0.37 Score=40.35 Aligned_cols=119 Identities=15% Similarity=0.195 Sum_probs=78.2
Q ss_pred HHHHHHHHHHHHHcCCcEEEEe----------cccCCCCCCchhHHHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHc
Q 022946 124 KDAVMQAAQKAKEAGSTRFCMG----------AAWRDTIGRKTNFNQILEYVKDIRDMGMEVCCTLGMLEKHQAIELKKA 193 (289)
Q Consensus 124 ~eei~~~~~~~~~~g~~~i~i~----------~~~~~~~ge~~~~~~l~e~i~~ik~~~~~i~~~~g~l~~e~l~~L~~a 193 (289)
.+++++.+... ..+.++++ ||+ +. ....+.+.+.++.++..|+.+..... -+.+.++.-++.
T Consensus 72 ~~emi~ia~~v---kP~~vtLVPEkr~ElTTegGl-dv---~~~~~~l~~~i~~l~~~gI~VSLFiD-P~~~qi~~A~~~ 143 (237)
T TIGR00559 72 TEEMIRIAEEI---KPEQVTLVPEARDEVTTEGGL-DV---ARLKDKLCELVKRFHAAGIEVSLFID-ADKDQISAAAEV 143 (237)
T ss_pred CHHHHHHHHHc---CCCEEEECCCCCCCccCCcCc-hh---hhCHHHHHHHHHHHHHCCCEEEEEeC-CCHHHHHHHHHh
Confidence 46666665544 45666664 222 11 13568899999999999998765543 468899999999
Q ss_pred CCCeEecCCCchHHHHhccCCCCCHHHHHHHHHHHHHcCCceeecEEeecCCCHHHHHHHH
Q 022946 194 GLTAYNHNLDTSREFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLL 254 (289)
Q Consensus 194 G~~~v~i~let~~~~~~~i~~~~~~~~~~~~i~~~~~~Gi~v~~~~i~Glget~ed~~~~l 254 (289)
|.++|.+.-..+.+-+..-.....++.+.++.+.+++.|+.|+ .|+|=+.+.+....
T Consensus 144 GAd~VELhTG~YA~a~~~~~~~~el~~i~~aa~~A~~lGL~Vn----AGHgLny~Nv~~i~ 200 (237)
T TIGR00559 144 GADRIEIHTGPYANAYNKKEMAEELQRIVKASVHAHSLGLKVN----AGHGLNYHNVKYFA 200 (237)
T ss_pred CcCEEEEechhhhcCCCchhHHHHHHHHHHHHHHHHHcCCEEe----cCCCCCHHhHHHHH
Confidence 9999988665552221110001236777788888888998885 46777777665544
No 209
>PRK08745 ribulose-phosphate 3-epimerase; Provisional
Probab=94.42 E-value=2.4 Score=35.58 Aligned_cols=97 Identities=11% Similarity=0.085 Sum_probs=59.3
Q ss_pred CHHHHHHHHHHHHHcCCcEEEE-ecccCCCCCCchhHHHHHHHHHHH-HhcCceEEEeCCC-CCHHHHHHHHHcCCCeEe
Q 022946 123 TKDAVMQAAQKAKEAGSTRFCM-GAAWRDTIGRKTNFNQILEYVKDI-RDMGMEVCCTLGM-LEKHQAIELKKAGLTAYN 199 (289)
Q Consensus 123 ~~eei~~~~~~~~~~g~~~i~i-~~~~~~~~ge~~~~~~l~e~i~~i-k~~~~~i~~~~g~-l~~e~l~~L~~aG~~~v~ 199 (289)
+.-.+.++++.+.+.|++.+++ ..++. +...-.+-..+++.++.. ....+++ +.-. -....++.+.++|.+.|.
T Consensus 14 d~~~l~~~i~~l~~~g~d~lHiDimDG~-FVPN~tfg~~~i~~lr~~~~~~~~dv--HLMv~~P~~~i~~~~~~gad~I~ 90 (223)
T PRK08745 14 DFARLGEEVDNVLKAGADWVHFDVMDNH-YVPNLTIGPMVCQALRKHGITAPIDV--HLMVEPVDRIVPDFADAGATTIS 90 (223)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEecccCc-cCCCcccCHHHHHHHHhhCCCCCEEE--EeccCCHHHHHHHHHHhCCCEEE
Confidence 4467788888888999999887 22222 221112224555555543 1222333 2222 245678999999999999
Q ss_pred cCCCchHHHHhccCCCCCHHHHHHHHHHHHHcCCce
Q 022946 200 HNLDTSREFYSKIITTRSYDERLETLKHVREAGINV 235 (289)
Q Consensus 200 i~let~~~~~~~i~~~~~~~~~~~~i~~~~~~Gi~v 235 (289)
+..|+. ....++++.+|++|++.
T Consensus 91 ~H~Ea~-------------~~~~~~l~~Ir~~g~k~ 113 (223)
T PRK08745 91 FHPEAS-------------RHVHRTIQLIKSHGCQA 113 (223)
T ss_pred EcccCc-------------ccHHHHHHHHHHCCCce
Confidence 999863 12345667777777654
No 210
>PRK13753 dihydropteroate synthase; Provisional
Probab=94.02 E-value=3.7 Score=35.61 Aligned_cols=77 Identities=16% Similarity=0.154 Sum_probs=55.8
Q ss_pred CCCHHHHHHHHHHHHHcCCcEEEEecccCCCCCCc----hhHHHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHcCCC
Q 022946 121 LMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRK----TNFNQILEYVKDIRDMGMEVCCTLGMLEKHQAIELKKAGLT 196 (289)
Q Consensus 121 ~~~~eei~~~~~~~~~~g~~~i~i~~~~~~~~ge~----~~~~~l~e~i~~ik~~~~~i~~~~g~l~~e~l~~L~~aG~~ 196 (289)
+++++.+++.++.+.+.|++-|-++|....|+..+ ....++...++.+++.+.. ++..+...+++++-.++|++
T Consensus 21 ~~~~d~a~~~a~~m~~~GAdIIDIGgeSTrPga~~vs~eeE~~Rv~pvI~~l~~~~~~--ISIDT~~~~va~~al~aGad 98 (279)
T PRK13753 21 RLDPAGAVTAAIEMLRVGSDVVDVGPAASHPDARPVSPADEIRRIAPLLDALSDQMHR--VSIDSFQPETQRYALKRGVG 98 (279)
T ss_pred CCCHHHHHHHHHHHHHCCCcEEEECCCCCCCCCCcCCHHHHHHHHHHHHHHHHhCCCc--EEEECCCHHHHHHHHHcCCC
Confidence 36899999999999999999888876443333222 3567778888888865433 35566778888877788887
Q ss_pred eEe
Q 022946 197 AYN 199 (289)
Q Consensus 197 ~v~ 199 (289)
.|+
T Consensus 99 iIN 101 (279)
T PRK13753 99 YLN 101 (279)
T ss_pred EEE
Confidence 665
No 211
>PRK05265 pyridoxine 5'-phosphate synthase; Provisional
Probab=93.88 E-value=0.62 Score=39.12 Aligned_cols=116 Identities=11% Similarity=0.173 Sum_probs=78.6
Q ss_pred HHHHHHHHHHHHHcCCcEEEEe----------cccCCCCCCchhHHHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHc
Q 022946 124 KDAVMQAAQKAKEAGSTRFCMG----------AAWRDTIGRKTNFNQILEYVKDIRDMGMEVCCTLGMLEKHQAIELKKA 193 (289)
Q Consensus 124 ~eei~~~~~~~~~~g~~~i~i~----------~~~~~~~ge~~~~~~l~e~i~~ik~~~~~i~~~~g~l~~e~l~~L~~a 193 (289)
.+++++.+... ..+.++++ ||+ +. ....+.+.+.++.++..|+.+..... -+.+.++.-++.
T Consensus 75 ~~em~~ia~~~---kP~~vtLVPE~r~E~TTegGl-dv---~~~~~~l~~~i~~L~~~gIrVSLFid-P~~~qi~~A~~~ 146 (239)
T PRK05265 75 TEEMLDIALEV---KPHQVTLVPEKREELTTEGGL-DV---AGQFDKLKPAIARLKDAGIRVSLFID-PDPEQIEAAAEV 146 (239)
T ss_pred CHHHHHHHHHC---CCCEEEECCCCCCCccCCccc-hh---hcCHHHHHHHHHHHHHCCCEEEEEeC-CCHHHHHHHHHh
Confidence 36666665544 44566664 222 11 23668899999999999988755543 578899999999
Q ss_pred CCCeEecCCCchHHHHhccCCCCCHHHHHHHHHHHHHcCCceeecEEeecCCCHHHHHH
Q 022946 194 GLTAYNHNLDTSREFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVG 252 (289)
Q Consensus 194 G~~~v~i~let~~~~~~~i~~~~~~~~~~~~i~~~~~~Gi~v~~~~i~Glget~ed~~~ 252 (289)
|.++|.+.-..+.+.+.. .....++.+..+.+.+++.|+.|+ .|+|=+.+.+..
T Consensus 147 GAd~VELhTG~yA~a~~~-~~~~el~~~~~aa~~a~~lGL~Vn----AGHgLny~Nv~~ 200 (239)
T PRK05265 147 GADRIELHTGPYADAKTE-AEAAELERIAKAAKLAASLGLGVN----AGHGLNYHNVKP 200 (239)
T ss_pred CcCEEEEechhhhcCCCc-chHHHHHHHHHHHHHHHHcCCEEe----cCCCCCHHhHHH
Confidence 999998866555222211 112247778888888899999885 567777777666
No 212
>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF). Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.
Probab=93.64 E-value=1.6 Score=37.01 Aligned_cols=132 Identities=16% Similarity=0.154 Sum_probs=76.9
Q ss_pred HHHHHHHHHHHcCCcEEEEecccCCCCCCchhHHHHHHHHHHHH-hcCceEEEeCCCCCHHHHHHHHHcCCCeEecCCCc
Q 022946 126 AVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIR-DMGMEVCCTLGMLEKHQAIELKKAGLTAYNHNLDT 204 (289)
Q Consensus 126 ei~~~~~~~~~~g~~~i~i~~~~~~~~ge~~~~~~l~e~i~~ik-~~~~~i~~~~g~l~~e~l~~L~~aG~~~v~i~let 204 (289)
+..+.++.+.+.|++.+++..-+....+.+. -.++++.++ ..++++....|.-+.+.++.+.+.|++.+.++-..
T Consensus 28 d~~~~a~~~~~~G~~~i~i~d~~~~~~~~~~----~~~~i~~i~~~~~~pv~~~GGI~s~~d~~~~l~~G~~~v~ig~~~ 103 (243)
T cd04731 28 DPVELAKRYNEQGADELVFLDITASSEGRET----MLDVVERVAEEVFIPLTVGGGIRSLEDARRLLRAGADKVSINSAA 103 (243)
T ss_pred CHHHHHHHHHHCCCCEEEEEcCCcccccCcc----cHHHHHHHHHhCCCCEEEeCCCCCHHHHHHHHHcCCceEEECchh
Confidence 4455555666889999988653322112222 345555555 35788888899999999999999999999887533
Q ss_pred hHHHHhccCCCCCHHHHHHHHHHHHHcCCceeecEE-----------eec-CCCHHHHHHHHHHHhcCCCCCCeeeeccc
Q 022946 205 SREFYSKIITTRSYDERLETLKHVREAGINVCSGGI-----------IGL-GEAEEDRVGLLHTLATLPTHPESVPINAL 272 (289)
Q Consensus 205 ~~~~~~~i~~~~~~~~~~~~i~~~~~~Gi~v~~~~i-----------~Gl-get~ed~~~~l~~l~~l~~~~~~v~i~~~ 272 (289)
. .+++...+..+.+.+..+.+..++- -|- .++..+..+.++.+.+. +.+.+.+...
T Consensus 104 ~----------~~p~~~~~i~~~~~~~~i~~~ld~k~~~~~~~~v~~~~~~~~~~~~~~~~~~~l~~~--G~d~i~v~~i 171 (243)
T cd04731 104 V----------ENPELIREIAKRFGSQCVVVSIDAKRRGDGGYEVYTHGGRKPTGLDAVEWAKEVEEL--GAGEILLTSM 171 (243)
T ss_pred h----------hChHHHHHHHHHcCCCCEEEEEEeeecCCCceEEEEcCCceecCCCHHHHHHHHHHC--CCCEEEEecc
Confidence 2 1233333333333222232222221 122 34455666777777777 4677766554
Q ss_pred e
Q 022946 273 L 273 (289)
Q Consensus 273 ~ 273 (289)
.
T Consensus 172 ~ 172 (243)
T cd04731 172 D 172 (243)
T ss_pred C
Confidence 3
No 213
>PRK14042 pyruvate carboxylase subunit B; Provisional
Probab=93.61 E-value=4 Score=39.45 Aligned_cols=133 Identities=8% Similarity=0.056 Sum_probs=73.1
Q ss_pred CCHHHHHHHHHHHHHcCCcEEEEecccCCCC-----CCchhHHHHHHHHHHHHhcCceEEEe----CCC--CCHH----H
Q 022946 122 MTKDAVMQAAQKAKEAGSTRFCMGAAWRDTI-----GRKTNFNQILEYVKDIRDMGMEVCCT----LGM--LEKH----Q 186 (289)
Q Consensus 122 ~~~eei~~~~~~~~~~g~~~i~i~~~~~~~~-----ge~~~~~~l~e~i~~ik~~~~~i~~~----~g~--l~~e----~ 186 (289)
+..++++..+..+.+.|+..+-+.||..... .| ..++++..+-+.+++..+..... .|+ ..++ .
T Consensus 23 ~~t~d~~~ia~~~d~~g~~siE~~gGatfd~~~rfl~e-dpwerl~~~r~~~pnt~lqmL~Rg~N~vGy~~~~d~vv~~~ 101 (596)
T PRK14042 23 MRTEDMLPICNKMDDVGFWAMEVWGGATFDACLRFLKE-DPWSRLRQLRQALPNTQLSMLLRGQNLLGYRNYADDVVRAF 101 (596)
T ss_pred CCHHHHHHHHHHHHhcCCCEEEeeCCcccceeecccCC-CHHHHHHHHHHhCCCCceEEEeccccccccccCChHHHHHH
Confidence 7889999999999999999987765432211 11 23334433333343333333321 232 3333 4
Q ss_pred HHHHHHcCCCeEecCCCchHHHHhccCCCCCHHHHHHHHHHHHHcCCceeecE--EeecCCCHHHHHHHHHHHhcCCCCC
Q 022946 187 AIELKKAGLTAYNHNLDTSREFYSKIITTRSYDERLETLKHVREAGINVCSGG--IIGLGEAEEDRVGLLHTLATLPTHP 264 (289)
Q Consensus 187 l~~L~~aG~~~v~i~let~~~~~~~i~~~~~~~~~~~~i~~~~~~Gi~v~~~~--i~Glget~ed~~~~l~~l~~l~~~~ 264 (289)
++..++.|+|.+.+.- + -...+.....++.+++.|..+...+ +.....|.+.+.+.++.+.++ +.
T Consensus 102 v~~a~~~Gidv~Rifd-~----------lnd~~n~~~~i~~~k~~G~~~~~~i~yt~sp~~t~e~~~~~ak~l~~~--Ga 168 (596)
T PRK14042 102 VKLAVNNGVDVFRVFD-A----------LNDARNLKVAIDAIKSHKKHAQGAICYTTSPVHTLDNFLELGKKLAEM--GC 168 (596)
T ss_pred HHHHHHcCCCEEEEcc-c----------CcchHHHHHHHHHHHHcCCEEEEEEEecCCCCCCHHHHHHHHHHHHHc--CC
Confidence 5666777998776532 0 0344555556666666666544332 222256666666666666666 34
Q ss_pred Ceee
Q 022946 265 ESVP 268 (289)
Q Consensus 265 ~~v~ 268 (289)
+.+.
T Consensus 169 d~I~ 172 (596)
T PRK14042 169 DSIA 172 (596)
T ss_pred CEEE
Confidence 4443
No 214
>COG0036 Rpe Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism]
Probab=93.57 E-value=0.7 Score=38.38 Aligned_cols=80 Identities=11% Similarity=0.085 Sum_probs=50.4
Q ss_pred CHHHHHHHHHHHHHcCCcEEEE-ecccCCCCCCchhHHHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHcCCCeEecC
Q 022946 123 TKDAVMQAAQKAKEAGSTRFCM-GAAWRDTIGRKTNFNQILEYVKDIRDMGMEVCCTLGMLEKHQAIELKKAGLTAYNHN 201 (289)
Q Consensus 123 ~~eei~~~~~~~~~~g~~~i~i-~~~~~~~~ge~~~~~~l~e~i~~ik~~~~~i~~~~g~l~~e~l~~L~~aG~~~v~i~ 201 (289)
+...+-++++.+.+.|++.+++ +.++. +...-+.-..+++.++...+.-+.++.-. .-.+..++.+.++|.+.|++.
T Consensus 14 D~~~l~~el~~~~~agad~iH~DVMDgh-FVPNiTfGp~~v~~l~~~t~~p~DvHLMV-~~p~~~i~~fa~agad~It~H 91 (220)
T COG0036 14 DFARLGEELKALEAAGADLIHIDVMDGH-FVPNITFGPPVVKALRKITDLPLDVHLMV-ENPDRYIEAFAKAGADIITFH 91 (220)
T ss_pred CHhHHHHHHHHHHHcCCCEEEEeccCCC-cCCCcccCHHHHHHHhhcCCCceEEEEec-CCHHHHHHHHHHhCCCEEEEE
Confidence 4456677788888899999887 33222 22222333566666665333333333211 123667899999999999999
Q ss_pred CCc
Q 022946 202 LDT 204 (289)
Q Consensus 202 let 204 (289)
.|+
T Consensus 92 ~E~ 94 (220)
T COG0036 92 AEA 94 (220)
T ss_pred ecc
Confidence 984
No 215
>PF00834 Ribul_P_3_epim: Ribulose-phosphate 3 epimerase family; InterPro: IPR000056 Ribulose-phosphate 3-epimerase (5.1.3.1 from EC) (also known as pentose-5-phosphate 3-epimerase or PPE) is the enzyme that converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. In Ralstonia eutropha (Alcaligenes eutrophus) two copies of the gene coding for PPE are known [], one is chromosomally encoded P40117 from SWISSPROT, the other one is on a plasmid Q04539 from SWISSPROT. PPE has been found in a wide range of bacteria, archaebacteria, fungi and plants. All the proteins have from 209 to 241 amino acid residues. The enzyme has a TIM barrel structure.; GO: 0004750 ribulose-phosphate 3-epimerase activity, 0005975 carbohydrate metabolic process; PDB: 3CTL_A 3CT7_D 3CU2_A 1RPX_A 3OVR_A 3OVP_A 3OVQ_B 3QC3_B 3INP_A 1TQJ_D ....
Probab=93.41 E-value=0.63 Score=38.38 Aligned_cols=127 Identities=17% Similarity=0.168 Sum_probs=68.2
Q ss_pred HHHHHHHHHHHHHcCCcEEEE-ecccCCCCCCchhHHHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHcCCCeEecCC
Q 022946 124 KDAVMQAAQKAKEAGSTRFCM-GAAWRDTIGRKTNFNQILEYVKDIRDMGMEVCCTLGMLEKHQAIELKKAGLTAYNHNL 202 (289)
Q Consensus 124 ~eei~~~~~~~~~~g~~~i~i-~~~~~~~~ge~~~~~~l~e~i~~ik~~~~~i~~~~g~l~~e~l~~L~~aG~~~v~i~l 202 (289)
.-.+.++++.+.+.|++.+++ ..++. +...-..-..+++.++......++++.-. .-+...++.++++|.+.|.+.+
T Consensus 11 ~~~l~~~i~~l~~~g~d~lHiDiMDg~-fvpn~~~g~~~i~~i~~~~~~~~DvHLMv-~~P~~~i~~~~~~g~~~i~~H~ 88 (201)
T PF00834_consen 11 FLNLEEEIKRLEEAGADWLHIDIMDGH-FVPNLTFGPDIIKAIRKITDLPLDVHLMV-ENPERYIEEFAEAGADYITFHA 88 (201)
T ss_dssp GGGHHHHHHHHHHTT-SEEEEEEEBSS-SSSSB-B-HHHHHHHHTTSSSEEEEEEES-SSGGGHHHHHHHHT-SEEEEEG
T ss_pred HHHHHHHHHHHHHcCCCEEEEeecccc-cCCcccCCHHHHHHHhhcCCCcEEEEeee-ccHHHHHHHHHhcCCCEEEEcc
Confidence 345677778888899999887 33222 22112233455555544422223332211 1245678999999999999999
Q ss_pred CchHHHHhccCCCCCHHHHHHHHHHHHHcCCceeecEEeecCCCHHHHHHHHHHHhcCCCCCCeeeecccee
Q 022946 203 DTSREFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLA 274 (289)
Q Consensus 203 et~~~~~~~i~~~~~~~~~~~~i~~~~~~Gi~v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~i~~~~p 274 (289)
|+. ++..+.++.+++.|++++..+ . .+|+- +.++.+.. ..+.|-++.-.|
T Consensus 89 E~~-------------~~~~~~i~~ik~~g~k~Gial--n-P~T~~---~~~~~~l~---~vD~VlvMsV~P 138 (201)
T PF00834_consen 89 EAT-------------EDPKETIKYIKEAGIKAGIAL--N-PETPV---EELEPYLD---QVDMVLVMSVEP 138 (201)
T ss_dssp GGT-------------TTHHHHHHHHHHTTSEEEEEE----TTS-G---GGGTTTGC---CSSEEEEESS-T
T ss_pred cch-------------hCHHHHHHHHHHhCCCEEEEE--E-CCCCc---hHHHHHhh---hcCEEEEEEecC
Confidence 763 233567788888888764332 2 22322 12222222 257777766544
No 216
>PLN02321 2-isopropylmalate synthase
Probab=93.31 E-value=4.2 Score=39.59 Aligned_cols=143 Identities=15% Similarity=0.114 Sum_probs=78.7
Q ss_pred CCCCHHHHHHHHHHHHHcCCcEEEEecccCCCCCCchhHHHHHHHHHHHHh-cC----ceEEEeCCCCCHHHHHHHHHcC
Q 022946 120 KLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRD-MG----MEVCCTLGMLEKHQAIELKKAG 194 (289)
Q Consensus 120 ~~~~~eei~~~~~~~~~~g~~~i~i~~~~~~~~ge~~~~~~l~e~i~~ik~-~~----~~i~~~~g~l~~e~l~~L~~aG 194 (289)
..++.++-++.++.+.+.|++.|..+. |.-.|..++.+..+.+.++. .. +...+..+....+.++.-.+++
T Consensus 103 ~~~s~eeKl~Ia~~L~~lGVd~IEvGf----P~~Sp~D~e~vr~i~~~~~~~v~~~~~v~~i~a~~ra~~~dId~A~~al 178 (632)
T PLN02321 103 ATLTSKEKLDIARQLAKLGVDIIEAGF----PIASPDDLEAVKTIAKEVGNEVDEDGYVPVICGLSRCNKKDIDAAWEAV 178 (632)
T ss_pred CCCCHHHHHHHHHHHHHcCCCEEEEeC----cCCCccHHHHHHHHHHhcccCCCccccceeeeeehhccHHhHHHHHHHh
Confidence 348999999999999999999998753 12224455554444333321 11 1212223334555666666652
Q ss_pred --C--CeEecCCCchHH-HHhccCCC--CCHHHHHHHHHHHHHcCCc-eeecEEeecCCCHHHHHHHHHHHhcCCCCCCe
Q 022946 195 --L--TAYNHNLDTSRE-FYSKIITT--RSYDERLETLKHVREAGIN-VCSGGIIGLGEAEEDRVGLLHTLATLPTHPES 266 (289)
Q Consensus 195 --~--~~v~i~let~~~-~~~~i~~~--~~~~~~~~~i~~~~~~Gi~-v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~ 266 (289)
. .+|.+.+-+.+- ...+++.. ...+...+.++.+++.|.. +..+.--+..-+++.+.+.++.+.+. +++.
T Consensus 179 ~~a~~~~I~i~~stSd~h~~~~l~~t~ee~l~~~~~~V~~Ak~~G~~~v~fs~EDa~rtd~d~l~~~~~~a~~a--Ga~~ 256 (632)
T PLN02321 179 KHAKRPRIHTFIATSEIHMEHKLRKTPDEVVEIARDMVKYARSLGCEDVEFSPEDAGRSDPEFLYRILGEVIKA--GATT 256 (632)
T ss_pred cCCCCCEEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCceEEEecccCCCCCHHHHHHHHHHHHHc--CCCE
Confidence 2 246655544422 22333321 2355566677778888874 44433333334456667777777776 3454
Q ss_pred ee
Q 022946 267 VP 268 (289)
Q Consensus 267 v~ 268 (289)
+.
T Consensus 257 I~ 258 (632)
T PLN02321 257 LN 258 (632)
T ss_pred EE
Confidence 43
No 217
>PRK00748 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated
Probab=93.28 E-value=2.5 Score=35.43 Aligned_cols=74 Identities=16% Similarity=0.167 Sum_probs=50.3
Q ss_pred HHHHHHHHHcCCcEEEEecccCCCCCCchhHHHHHHHHHHHH-hcCceEEEeCCCCCHHHHHHHHHcCCCeEecCCCch
Q 022946 128 MQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIR-DMGMEVCCTLGMLEKHQAIELKKAGLTAYNHNLDTS 205 (289)
Q Consensus 128 ~~~~~~~~~~g~~~i~i~~~~~~~~ge~~~~~~l~e~i~~ik-~~~~~i~~~~g~l~~e~l~~L~~aG~~~v~i~let~ 205 (289)
.+.++.+.+.|++.+++.+-+....|.+.+ .+.++.+. ..++++....|.-+.+.++++.++|++.+.++-...
T Consensus 33 ~~~a~~~~~~g~~~i~v~dld~~~~g~~~~----~~~i~~i~~~~~~pv~~~GGI~~~ed~~~~~~~Ga~~vilg~~~l 107 (233)
T PRK00748 33 VAQAKAWEDQGAKWLHLVDLDGAKAGKPVN----LELIEAIVKAVDIPVQVGGGIRSLETVEALLDAGVSRVIIGTAAV 107 (233)
T ss_pred HHHHHHHHHcCCCEEEEEeCCccccCCccc----HHHHHHHHHHCCCCEEEcCCcCCHHHHHHHHHcCCCEEEECchHH
Confidence 444555667899999887643222232233 34444443 346788888899999999999999999998776443
No 218
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=92.89 E-value=1.4 Score=41.28 Aligned_cols=120 Identities=17% Similarity=0.204 Sum_probs=78.3
Q ss_pred HHHHHHHHHHHHcCCcEEEEecccCCCCCCchhHHHHHHHHHHHHhc--CceEEEeCCCCCHHHHHHHHHcCCCeEecCC
Q 022946 125 DAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDM--GMEVCCTLGMLEKHQAIELKKAGLTAYNHNL 202 (289)
Q Consensus 125 eei~~~~~~~~~~g~~~i~i~~~~~~~~ge~~~~~~l~e~i~~ik~~--~~~i~~~~g~l~~e~l~~L~~aG~~~v~i~l 202 (289)
+++.+.++.+.+.|++.+++-... |.+ ..+.++++.+++. ++.+..-| ..+.+....|.++|+|.|.+|+
T Consensus 224 ~~~~~ra~~Lv~aGVd~i~~D~a~----g~~---~~~~~~i~~i~~~~~~~~vi~g~-~~t~~~~~~l~~~G~d~i~vg~ 295 (475)
T TIGR01303 224 GDVGGKAKALLDAGVDVLVIDTAH----GHQ---VKMISAIKAVRALDLGVPIVAGN-VVSAEGVRDLLEAGANIIKVGV 295 (475)
T ss_pred ccHHHHHHHHHHhCCCEEEEeCCC----CCc---HHHHHHHHHHHHHCCCCeEEEec-cCCHHHHHHHHHhCCCEEEECC
Confidence 456677778888999998874321 322 7888889998865 45555533 5889999999999999999877
Q ss_pred Cch-HHHHhccCC--CCCHHHHHHHHHHHHHcCCceeecEEeecCCCHHHHHHHHH
Q 022946 203 DTS-REFYSKIIT--TRSYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLH 255 (289)
Q Consensus 203 et~-~~~~~~i~~--~~~~~~~~~~i~~~~~~Gi~v~~~~i~Glget~ed~~~~l~ 255 (289)
-.. -=+.+.+.. ......++++.+.+++.|+++.++ |=-.+..|+...+.
T Consensus 296 g~Gs~~ttr~~~~~g~~~~~a~~~~~~~~~~~~~~viad---Ggi~~~~di~kala 348 (475)
T TIGR01303 296 GPGAMCTTRMMTGVGRPQFSAVLECAAEARKLGGHVWAD---GGVRHPRDVALALA 348 (475)
T ss_pred cCCccccCccccCCCCchHHHHHHHHHHHHHcCCcEEEe---CCCCCHHHHHHHHH
Confidence 654 222222222 124677788888888887664221 11235556555544
No 219
>PTZ00170 D-ribulose-5-phosphate 3-epimerase; Provisional
Probab=92.83 E-value=2.2 Score=35.96 Aligned_cols=101 Identities=12% Similarity=0.178 Sum_probs=56.9
Q ss_pred CHHHHHHHHHHHHHcCCcEEEEecccCCCCCCchhHHHHHHHHHHHH-hcCceEEEeCCCCCHHHHHHHHHcCCCeEecC
Q 022946 123 TKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIR-DMGMEVCCTLGMLEKHQAIELKKAGLTAYNHN 201 (289)
Q Consensus 123 ~~eei~~~~~~~~~~g~~~i~i~~~~~~~~ge~~~~~~l~e~i~~ik-~~~~~i~~~~g~l~~e~l~~L~~aG~~~v~i~ 201 (289)
++-.+.++++.+.+.|++.+++---+..+...-..-..+++.++... ...+.+..-. .-....++.+.++|+|.+.+-
T Consensus 17 d~~~l~~~~~~l~~~~~~~~H~DimDg~fvpn~~~G~~~v~~lr~~~~~~~lDvHLm~-~~p~~~i~~~~~~Gad~itvH 95 (228)
T PTZ00170 17 DFSKLADEAQDVLSGGADWLHVDVMDGHFVPNLSFGPPVVKSLRKHLPNTFLDCHLMV-SNPEKWVDDFAKAGASQFTFH 95 (228)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEecccCccCCCcCcCHHHHHHHHhcCCCCCEEEEECC-CCHHHHHHHHHHcCCCEEEEe
Confidence 45677888899999999998872211112111112234444443321 2223332221 123556799999999999998
Q ss_pred CCchHHHHhccCCCCCHHHHHHHHHHHHHcCCcee
Q 022946 202 LDTSREFYSKIITTRSYDERLETLKHVREAGINVC 236 (289)
Q Consensus 202 let~~~~~~~i~~~~~~~~~~~~i~~~~~~Gi~v~ 236 (289)
.|+.. ....++++.+++.|..+.
T Consensus 96 ~ea~~------------~~~~~~l~~ik~~G~~~g 118 (228)
T PTZ00170 96 IEATE------------DDPKAVARKIREAGMKVG 118 (228)
T ss_pred ccCCc------------hHHHHHHHHHHHCCCeEE
Confidence 87631 114456666666676544
No 220
>PF05913 DUF871: Bacterial protein of unknown function (DUF871); InterPro: IPR008589 This family consists of several conserved hypothetical proteins from bacteria and archaea. The function of this family is unknown though a number are annotated as outer surface proteins.; PDB: 2P0O_A 1X7F_A.
Probab=92.72 E-value=0.22 Score=44.80 Aligned_cols=146 Identities=16% Similarity=0.135 Sum_probs=77.9
Q ss_pred CHHHHHHHHHHHHHcCCcEEEEecccCCCCCC-chhHHHHHHHHHHHHhcCceEEEe--CCC-----CCHHHHHHHHHcC
Q 022946 123 TKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGR-KTNFNQILEYVKDIRDMGMEVCCT--LGM-----LEKHQAIELKKAG 194 (289)
Q Consensus 123 ~~eei~~~~~~~~~~g~~~i~i~~~~~~~~ge-~~~~~~l~e~i~~ik~~~~~i~~~--~g~-----l~~e~l~~L~~aG 194 (289)
+.++..+.++.+.++|+++|+.+-. .+.+. ....+++.++++..++.++++.+. ... .+.+.++.|++.|
T Consensus 12 ~~~~~~~yi~~a~~~Gf~~iFTSL~--ipe~~~~~~~~~~~~l~~~a~~~~~~v~~Disp~~l~~lg~~~~dl~~~~~lG 89 (357)
T PF05913_consen 12 SFEENKAYIEKAAKYGFKRIFTSLH--IPEDDPEDYLERLKELLKLAKELGMEVIADISPKVLKKLGISYDDLSFFKELG 89 (357)
T ss_dssp -HHHHHHHHHHHHCTTEEEEEEEE-----------HHHHHHHHHHHHHHCT-EEEEEE-CCHHHTTT-BTTBTHHHHHHT
T ss_pred CHHHHHHHHHHHHHCCCCEEECCCC--cCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCHHHHHHcCCCHHHHHHHHHcC
Confidence 5788999999999999988855331 11111 246688888888888889887543 221 2344578999999
Q ss_pred CCeEec--CCCch--HHHHhc-cCC--CCCHHHHHHHHHHHHHcCC-----ceeecEEe--ecCCCHHHHHHHHHHHhcC
Q 022946 195 LTAYNH--NLDTS--REFYSK-IIT--TRSYDERLETLKHVREAGI-----NVCSGGII--GLGEAEEDRVGLLHTLATL 260 (289)
Q Consensus 195 ~~~v~i--~let~--~~~~~~-i~~--~~~~~~~~~~i~~~~~~Gi-----~v~~~~i~--Glget~ed~~~~l~~l~~l 260 (289)
++.+-+ |+... .++-+. +.- ..|. ---+.++.+.+.|. ..+.++-. ..|=+.+.+.+.-+++++.
T Consensus 90 i~~lRlD~Gf~~~~ia~ls~ng~~I~LNASt-i~~~~l~~L~~~~~~~~~i~a~HNfYPr~~TGLs~~~f~~~n~~~k~~ 168 (357)
T PF05913_consen 90 IDGLRLDYGFSGEEIAKLSKNGIKIELNAST-ITEEELDELIKYGANFSNIIACHNFYPRPYTGLSEEFFIEKNQLLKEY 168 (357)
T ss_dssp -SEEEESSS-SCHHHHHHTTT-SEEEEETTT---CCHHHHHCCTT--GGGEEEE---B-STT-SB-HHHHHHHHHHHHHT
T ss_pred CCEEEECCCCCHHHHHHHHhCCCEEEEECCC-CChHHHHHHHHhcCCHHHeEEEecccCCCCCCCCHHHHHHHHHHHHHC
Confidence 998876 44442 111111 100 1111 01223344555553 23344433 1256778888888888888
Q ss_pred CCCCCeeeeccceecC
Q 022946 261 PTHPESVPINALLAVK 276 (289)
Q Consensus 261 ~~~~~~v~i~~~~p~p 276 (289)
+ +.+..|+|-.
T Consensus 169 --g---i~~~AFI~g~ 179 (357)
T PF05913_consen 169 --G---IKTAAFIPGD 179 (357)
T ss_dssp --T----EEEEEE--S
T ss_pred --C---CcEEEEecCC
Confidence 3 5678888865
No 221
>cd01299 Met_dep_hydrolase_A Metallo-dependent hydrolases, subgroup A is part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The function of this subgroup is unknown.
Probab=92.67 E-value=4 Score=36.30 Aligned_cols=79 Identities=13% Similarity=0.119 Sum_probs=46.4
Q ss_pred CCHHHHHHHHHHHHHcCCcEEEEecccC--CCCC----CchhHHHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHcCC
Q 022946 122 MTKDAVMQAAQKAKEAGSTRFCMGAAWR--DTIG----RKTNFNQILEYVKDIRDMGMEVCCTLGMLEKHQAIELKKAGL 195 (289)
Q Consensus 122 ~~~eei~~~~~~~~~~g~~~i~i~~~~~--~~~g----e~~~~~~l~e~i~~ik~~~~~i~~~~g~l~~e~l~~L~~aG~ 195 (289)
-+++++.+.++...+.|++.|-+...+. .... .....+.+.++++..++.++.+.++.. ....++.+.++|+
T Consensus 117 ~~~~~~~~~v~~~~~~G~~~iK~~~~g~~~~~~~~~~~~~~~~e~l~~~~~~A~~~g~~v~~H~~--~~~~i~~~l~~G~ 194 (342)
T cd01299 117 DGVEEVRAAVREQLRRGADQIKIMATGGVLSPGDPPPDTQFSEEELRAIVDEAHKAGLYVAAHAY--GAEAIRRAIRAGV 194 (342)
T ss_pred cCHHHHHHHHHHHHHhCCCEEEEeccCCcCCCCCCCcccCcCHHHHHHHHHHHHHcCCEEEEEeC--CHHHHHHHHHcCC
Confidence 4689999999999999998875532111 1101 013446677777777777776655432 1233444455555
Q ss_pred CeEecCC
Q 022946 196 TAYNHNL 202 (289)
Q Consensus 196 ~~v~i~l 202 (289)
+.+.++.
T Consensus 195 ~~i~H~~ 201 (342)
T cd01299 195 DTIEHGF 201 (342)
T ss_pred CEEeecC
Confidence 5555543
No 222
>TIGR00007 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase. Examples of this enzyme in Actinobacteria have been found to be bifunctional, also possessing phosphoribosylanthranilate isomerase activity ; the trusted cutoff here has now been raised to 275.0 to exclude the bifunctional group, now represented by model TIGR01919. HisA from Lactococcus lactis was reported to be inactive (MEDLINE:93322317).
Probab=92.61 E-value=4.5 Score=33.84 Aligned_cols=73 Identities=21% Similarity=0.202 Sum_probs=48.9
Q ss_pred HHHHHHHHHcCCcEEEEecccCCCCCCchhHHHHHHHHHHHH-hcCceEEEeCCCCCHHHHHHHHHcCCCeEecCCCc
Q 022946 128 MQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIR-DMGMEVCCTLGMLEKHQAIELKKAGLTAYNHNLDT 204 (289)
Q Consensus 128 ~~~~~~~~~~g~~~i~i~~~~~~~~ge~~~~~~l~e~i~~ik-~~~~~i~~~~g~l~~e~l~~L~~aG~~~v~i~let 204 (289)
.+.++.+.+.|++.+++..-+....|.+.+++ +++.+. ...+++....|.-+.+.++.+.++|++.+.++-..
T Consensus 31 ~~~a~~~~~~g~~~l~v~dl~~~~~g~~~~~~----~i~~i~~~~~~pi~~ggGI~~~ed~~~~~~~Ga~~vvlgs~~ 104 (230)
T TIGR00007 31 VEAAKKWEEEGAERIHVVDLDGAKEGGPVNLP----VIKKIVRETGVPVQVGGGIRSLEDVEKLLDLGVDRVIIGTAA 104 (230)
T ss_pred HHHHHHHHHcCCCEEEEEeCCccccCCCCcHH----HHHHHHHhcCCCEEEeCCcCCHHHHHHHHHcCCCEEEEChHH
Confidence 44455567899999988653332223333333 333333 23677777888899999999999999999877533
No 223
>COG0826 Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones]
Probab=92.58 E-value=0.79 Score=41.15 Aligned_cols=83 Identities=17% Similarity=0.049 Sum_probs=59.6
Q ss_pred CHHHHHHHHHcCCCeEecCCCch-HHHHhccCCCCCHHHHHHHHHHHHHcCCceeecEEeec-CCCHHHHHHHHHHHhcC
Q 022946 183 EKHQAIELKKAGLTAYNHNLDTS-REFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGL-GEAEEDRVGLLHTLATL 260 (289)
Q Consensus 183 ~~e~l~~L~~aG~~~v~i~let~-~~~~~~i~~~~~~~~~~~~i~~~~~~Gi~v~~~~i~Gl-get~ed~~~~l~~l~~l 260 (289)
+.+.++...++|.|.|++|.... -..+. ...+.+++.+.++.++++|.++...+=.-+ .+..+.+.+.++.+.++
T Consensus 15 ~l~~l~~ai~~GADaVY~G~~~~~~R~~a---~nfs~~~l~e~i~~ah~~gkk~~V~~N~~~~~~~~~~~~~~l~~l~e~ 91 (347)
T COG0826 15 NLEDLKAAIAAGADAVYIGEKEFGLRRRA---LNFSVEDLAEAVELAHSAGKKVYVAVNTLLHNDELETLERYLDRLVEL 91 (347)
T ss_pred CHHHHHHHHHcCCCEEEeCCccccccccc---ccCCHHHHHHHHHHHHHcCCeEEEEeccccccchhhHHHHHHHHHHHc
Confidence 46777888888999999998633 22221 235789999999999999997543332222 55667788999999999
Q ss_pred CCCCCeeeec
Q 022946 261 PTHPESVPIN 270 (289)
Q Consensus 261 ~~~~~~v~i~ 270 (289)
+++.|-+.
T Consensus 92 --GvDaviv~ 99 (347)
T COG0826 92 --GVDAVIVA 99 (347)
T ss_pred --CCCEEEEc
Confidence 57776553
No 224
>cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water. IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis.
Probab=92.47 E-value=3.8 Score=34.01 Aligned_cols=75 Identities=16% Similarity=0.121 Sum_probs=49.2
Q ss_pred CCHHHHHHHHHHHHHcCCcEEEEecccCCCCCCchhHHHHHHHHHHHHh-cCceEEEeCCCCCHHHHHHHHHcCCCeEec
Q 022946 122 MTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRD-MGMEVCCTLGMLEKHQAIELKKAGLTAYNH 200 (289)
Q Consensus 122 ~~~eei~~~~~~~~~~g~~~i~i~~~~~~~~ge~~~~~~l~e~i~~ik~-~~~~i~~~~g~l~~e~l~~L~~aG~~~v~i 200 (289)
.+.+...+.++.+.+.|++.+++........|.. +.++.+++ .++.+..-.+..+.+.++.+.++|++.+.+
T Consensus 28 ~~~~~~~~~A~~~~~~GA~~l~v~~~~~~~~g~~-------~~~~~i~~~v~iPi~~~~~i~~~~~v~~~~~~Gad~v~l 100 (217)
T cd00331 28 REDFDPVEIAKAYEKAGAAAISVLTEPKYFQGSL-------EDLRAVREAVSLPVLRKDFIIDPYQIYEARAAGADAVLL 100 (217)
T ss_pred CCCCCHHHHHHHHHHcCCCEEEEEeCccccCCCH-------HHHHHHHHhcCCCEEECCeecCHHHHHHHHHcCCCEEEE
Confidence 3445566777777789999998875433332322 33333332 356665555667788999999999999987
Q ss_pred CCC
Q 022946 201 NLD 203 (289)
Q Consensus 201 ~le 203 (289)
+..
T Consensus 101 ~~~ 103 (217)
T cd00331 101 IVA 103 (217)
T ss_pred eec
Confidence 653
No 225
>cd04732 HisA HisA. Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene.
Probab=92.42 E-value=2.5 Score=35.50 Aligned_cols=75 Identities=20% Similarity=0.198 Sum_probs=50.8
Q ss_pred HHHHHHHHHHHcCCcEEEEecccCCCCCCchhHHHHHHHHHHHH-hcCceEEEeCCCCCHHHHHHHHHcCCCeEecCCCc
Q 022946 126 AVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIR-DMGMEVCCTLGMLEKHQAIELKKAGLTAYNHNLDT 204 (289)
Q Consensus 126 ei~~~~~~~~~~g~~~i~i~~~~~~~~ge~~~~~~l~e~i~~ik-~~~~~i~~~~g~l~~e~l~~L~~aG~~~v~i~let 204 (289)
+..+.++.+.+.|++.+++.+-.....+.+.+ .++++.++ ..++++....|..+.+.++++.++|++.+.++-..
T Consensus 30 dp~~~a~~~~~~g~d~l~v~dl~~~~~~~~~~----~~~i~~i~~~~~~pv~~~GgI~~~e~~~~~~~~Gad~vvigs~~ 105 (234)
T cd04732 30 DPVEVAKKWEEAGAKWLHVVDLDGAKGGEPVN----LELIEEIVKAVGIPVQVGGGIRSLEDIERLLDLGVSRVIIGTAA 105 (234)
T ss_pred CHHHHHHHHHHcCCCEEEEECCCccccCCCCC----HHHHHHHHHhcCCCEEEeCCcCCHHHHHHHHHcCCCEEEECchH
Confidence 44555566667899999887532221122233 34444444 34678888888899999999999999999877644
No 226
>TIGR02146 LysS_fung_arch homocitrate synthase. This model includes the yeast LYS21 gene which carries out the first step of the alpha-aminoadipate (AAA) lysine biosynthesis pathway. A related pathway is found in Thermus thermophilus. This enzyme is closely related to 2-isopropylmalate synthase (LeuA) and citramalate synthase (CimA), both of which are present in the euryarchaeota. Some archaea have a separate homocitrate synthase (AksA) which also synthesizes longer homocitrate analogs.
Probab=92.34 E-value=7.8 Score=34.54 Aligned_cols=138 Identities=13% Similarity=0.101 Sum_probs=86.1
Q ss_pred CCHHHHHHHHHHHHHcCCcEEEEecccCCCCCCchhHHHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHcCCCeEecC
Q 022946 122 MTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMGMEVCCTLGMLEKHQAIELKKAGLTAYNHN 201 (289)
Q Consensus 122 ~~~eei~~~~~~~~~~g~~~i~i~~~~~~~~ge~~~~~~l~e~i~~ik~~~~~i~~~~g~l~~e~l~~L~~aG~~~v~i~ 201 (289)
++.++.++.++.+.+.|++.+.++... .. +.. ....+.+.... ....+ ...+....+.++...++|++.+.+.
T Consensus 17 ~~~~~ki~i~~~l~~~Gv~~iE~g~p~---~~-~~~-~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~ 89 (344)
T TIGR02146 17 FSTEQKIEIAKALDEFGIDYIEVTHPA---AS-KQS-RIDIEIIASLG-LKANI-VTHIRCRLDDAKVAVELGVDGIDIF 89 (344)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEeCCC---CC-HHH-HHHHHHHHhcC-CCcEE-EEECCCCHHHHHHHHHCCcCEEEEE
Confidence 688999999999999999998776421 11 111 12233333322 11122 2223334667788888899887764
Q ss_pred CCch-HHHHhccCC--CCCHHHHHHHHHHHHHcCCceeecEEeecCCCHHHHHHHHHHHhcCCCCCCeee
Q 022946 202 LDTS-REFYSKIIT--TRSYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVP 268 (289)
Q Consensus 202 let~-~~~~~~i~~--~~~~~~~~~~i~~~~~~Gi~v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~ 268 (289)
.-.. -........ ....+.+...++.+++.|+.+...+.-......+++.+..+.+..+ +++.+.
T Consensus 90 ~~~s~~~~~~~~~~~~~~~~~~v~~~~e~a~~~g~~~~~~~~~~~~~~~~~~~~~~d~~~~~--g~~~i~ 157 (344)
T TIGR02146 90 FGTSKLLRIAEHRSDAKSILESARETIEYAKSAGLEVRFSAEDTFRSELADLLSIYETVGVF--GVDRVG 157 (344)
T ss_pred EecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEEeeCCCCCHHHHHHHHHHHHHC--CCCEEE
Confidence 4222 222222222 2235677889999999999887777766666678888888888877 466543
No 227
>COG0106 HisA Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase [Amino acid transport and metabolism]
Probab=92.33 E-value=1.4 Score=37.18 Aligned_cols=74 Identities=16% Similarity=0.152 Sum_probs=52.1
Q ss_pred HHHHHHHHHcCCcEEEEecccCCCCCCchhHHHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHcCCCeEecCCCc
Q 022946 128 MQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMGMEVCCTLGMLEKHQAIELKKAGLTAYNHNLDT 204 (289)
Q Consensus 128 ~~~~~~~~~~g~~~i~i~~~~~~~~ge~~~~~~l~e~i~~ik~~~~~i~~~~g~l~~e~l~~L~~aG~~~v~i~let 204 (289)
.+.++...+.|++.++++.-+.-..|.+.+.+.+.++++.. ..++.+-.|.-+.+.++.|.++|++++.+|--+
T Consensus 34 ~~~a~~~~~~Ga~~lHlVDLdgA~~g~~~n~~~i~~i~~~~---~~~vQvGGGIRs~~~v~~ll~~G~~rViiGt~a 107 (241)
T COG0106 34 LEVAKKWSDQGAEWLHLVDLDGAKAGGPRNLEAIKEILEAT---DVPVQVGGGIRSLEDVEALLDAGVARVIIGTAA 107 (241)
T ss_pred HHHHHHHHHcCCcEEEEeeccccccCCcccHHHHHHHHHhC---CCCEEeeCCcCCHHHHHHHHHCCCCEEEEecce
Confidence 44455666789999998764333335555655555555444 666777788899999999999999999887544
No 228
>TIGR01769 GGGP geranylgeranylglyceryl phosphate synthase. This model represents geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The active enzyme is reported to be a homopentamer in Methanobacterium thermoautotrophicum but is reported to be a homodimer in Thermoplasma acidophilum.
Probab=92.21 E-value=2.4 Score=35.10 Aligned_cols=76 Identities=17% Similarity=0.108 Sum_probs=55.6
Q ss_pred CCCCHHHHHHHHHHHHHcCCcEEEEecccCCCCCCchhHHHHHHHHHHHHh-cCceEEEeCCCCCHHHHHHHHHcCCCeE
Q 022946 120 KLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRD-MGMEVCCTLGMLEKHQAIELKKAGLTAY 198 (289)
Q Consensus 120 ~~~~~eei~~~~~~~~~~g~~~i~i~~~~~~~~ge~~~~~~l~e~i~~ik~-~~~~i~~~~g~l~~e~l~~L~~aG~~~v 198 (289)
+.+++|++...+..+..+|.+.+++..+... +.+.. .++++.+++ .++.+..-.|.-+.+.++++.++|.|.+
T Consensus 129 p~~~~e~~~~~a~aa~~~G~~~i~Le~~sGa--~~~v~----~e~i~~Vk~~~~~Pv~vGGGIrs~e~a~~l~~~GAD~V 202 (205)
T TIGR01769 129 PYNKPEIAAAYCLAAKYFGMKWVYLEAGSGA--SYPVN----PETISLVKKASGIPLIVGGGIRSPEIAYEIVLAGADAI 202 (205)
T ss_pred CCCCHHHHHHHHHHHHHcCCCEEEEEcCCCC--CCCCC----HHHHHHHHHhhCCCEEEeCCCCCHHHHHHHHHcCCCEE
Confidence 3479999999988888899999988653211 11222 444555552 3677778889999999999999999998
Q ss_pred ecC
Q 022946 199 NHN 201 (289)
Q Consensus 199 ~i~ 201 (289)
-+|
T Consensus 203 VVG 205 (205)
T TIGR01769 203 VTG 205 (205)
T ss_pred EeC
Confidence 765
No 229
>PRK15452 putative protease; Provisional
Probab=92.20 E-value=0.93 Score=42.13 Aligned_cols=90 Identities=9% Similarity=0.013 Sum_probs=61.2
Q ss_pred eEEEeCCCCCHHHHHHHHHcCCCeEecCCCch-HHHHhccCCCCCHHHHHHHHHHHHHcCCceeecEEeec-CCCHHHHH
Q 022946 174 EVCCTLGMLEKHQAIELKKAGLTAYNHNLDTS-REFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGL-GEAEEDRV 251 (289)
Q Consensus 174 ~i~~~~g~l~~e~l~~L~~aG~~~v~i~let~-~~~~~~i~~~~~~~~~~~~i~~~~~~Gi~v~~~~i~Gl-get~ed~~ 251 (289)
++.+..| +.+.++...++|.|.|++|.+.+ .+... ...+.+++.++++.+++.|.++...+-.=. .+..+.+.
T Consensus 5 eLlapag--~~e~l~aAi~~GADaVY~G~~~~~~R~~~---~~f~~edl~eav~~ah~~g~kvyvt~n~i~~e~el~~~~ 79 (443)
T PRK15452 5 ELLSPAG--TLKNMRYAFAYGADAVYAGQPRYSLRVRN---NEFNHENLALGINEAHALGKKFYVVVNIAPHNAKLKTFI 79 (443)
T ss_pred EEEEECC--CHHHHHHHHHCCCCEEEECCCccchhhhc---cCCCHHHHHHHHHHHHHcCCEEEEEecCcCCHHHHHHHH
Confidence 3444444 46788888899999999999887 44322 245779999999999999988655432212 33345566
Q ss_pred HHHHHHhcCCCCCCeeeec
Q 022946 252 GLLHTLATLPTHPESVPIN 270 (289)
Q Consensus 252 ~~l~~l~~l~~~~~~v~i~ 270 (289)
+.++.+.++ +++.+-+.
T Consensus 80 ~~l~~l~~~--gvDgvIV~ 96 (443)
T PRK15452 80 RDLEPVIAM--KPDALIMS 96 (443)
T ss_pred HHHHHHHhC--CCCEEEEc
Confidence 666777777 46766554
No 230
>COG2875 CobM Precorrin-4 methylase [Coenzyme metabolism]
Probab=92.19 E-value=4.4 Score=33.96 Aligned_cols=116 Identities=17% Similarity=0.244 Sum_probs=72.3
Q ss_pred CCHHHHHHHHHHHHHcCCcEEEEecccCCCCCCchhHHHHHHHHHHHHhcCceEEEeCC---------------------
Q 022946 122 MTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMGMEVCCTLG--------------------- 180 (289)
Q Consensus 122 ~~~eei~~~~~~~~~~g~~~i~i~~~~~~~~ge~~~~~~l~e~i~~ik~~~~~i~~~~g--------------------- 180 (289)
|+.|||++.+..+.+.|-+-+.+.+|+ |..+.-+.|-++.+.+.|+.+.+.+|
T Consensus 59 ~tLeeIi~~m~~a~~~Gk~VvRLhSGD------psiYgA~~EQm~~L~~~gI~yevvPGVss~~AAAA~L~~ELT~P~vs 132 (254)
T COG2875 59 LTLEEIIDLMVDAVREGKDVVRLHSGD------PSIYGALAEQMRELEALGIPYEVVPGVSSFAAAAAALGIELTVPGVS 132 (254)
T ss_pred CCHHHHHHHHHHHHHcCCeEEEeecCC------hhHHHHHHHHHHHHHHcCCCeEEeCCchHHHHHHHHhCceeecCCcc
Confidence 899999999999999998878887643 55677788888888776665433222
Q ss_pred -------------CCCHHHHHHHHHcCCCeE-ecCCCchHHHHhccCCC----C---------CH-------HHHHHHHH
Q 022946 181 -------------MLEKHQAIELKKAGLTAY-NHNLDTSREFYSKIITT----R---------SY-------DERLETLK 226 (289)
Q Consensus 181 -------------~l~~e~l~~L~~aG~~~v-~i~let~~~~~~~i~~~----~---------~~-------~~~~~~i~ 226 (289)
....|.+..|.+.|.+.+ .+++...+++-+++..+ . +| ...-+...
T Consensus 133 QtvilTR~sgrt~vpe~e~l~~la~~~aTm~I~L~v~~I~~vv~~L~~g~y~~dtPVaVV~rAsWpDe~ii~GTL~dIa~ 212 (254)
T COG2875 133 QTVILTRPSGRTPVPEKESLAALAKHGATMVIFLGVHAIDKVVEELLEGGYPPDTPVAVVYRASWPDEKIIRGTLEDIAE 212 (254)
T ss_pred eeEEEEccccCCCCCchhHHHHHHhcCceeEeeehhhHHHHHHHHHhcCCCCCCCCEEEEEecCCCcccEEEeeHHHHHH
Confidence 125677788888877543 34554444433333321 1 11 11223334
Q ss_pred HHHHcCCceeecEEeec
Q 022946 227 HVREAGINVCSGGIIGL 243 (289)
Q Consensus 227 ~~~~~Gi~v~~~~i~Gl 243 (289)
..++.|+.-++.+++|-
T Consensus 213 kv~~~~i~rTAlIiVG~ 229 (254)
T COG2875 213 KVKEAGIRRTALIIVGD 229 (254)
T ss_pred HHHhcCceeEEEEEEcc
Confidence 46667777667777765
No 231
>COG0269 SgbH 3-hexulose-6-phosphate synthase and related proteins [Carbohydrate transport and metabolism]
Probab=92.13 E-value=6 Score=32.78 Aligned_cols=122 Identities=14% Similarity=0.044 Sum_probs=73.4
Q ss_pred CCHHHHHHHHHHHHHcCCcEEEEecccCCCCCCchhHHHHHHHHHHHHhcCce--EEEeCCCCC--HHHHHHHHHcCCCe
Q 022946 122 MTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMGME--VCCTLGMLE--KHQAIELKKAGLTA 197 (289)
Q Consensus 122 ~~~eei~~~~~~~~~~g~~~i~i~~~~~~~~ge~~~~~~l~e~i~~ik~~~~~--i~~~~g~l~--~e~l~~L~~aG~~~ 197 (289)
.+.++.++.++.+.+. +.-+.. |-|+...+=++.++.+++...+ +....-+.| .=..+...++|.|.
T Consensus 13 ~~l~~Ai~~a~~v~~~-~diiEv--------GTpLik~eG~~aV~~lr~~~pd~~IvAD~Kt~D~G~~e~~ma~~aGAd~ 83 (217)
T COG0269 13 LDLEEAIEIAEEVADY-VDIIEV--------GTPLIKAEGMRAVRALRELFPDKIIVADLKTADAGAIEARMAFEAGADW 83 (217)
T ss_pred cCHHHHHHHHHHhhhc-ceEEEe--------CcHHHHHhhHHHHHHHHHHCCCCeEEeeeeecchhHHHHHHHHHcCCCE
Confidence 5788888888877765 443433 2366667777888888855322 333222222 33467888899999
Q ss_pred EecCCCchHHHHhccCCCCCHHHHHHHHHHHHHcCCceeecEEeecCCCHHHHHHHHHHHhcCCCCCCeeeecc
Q 022946 198 YNHNLDTSREFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINA 271 (289)
Q Consensus 198 v~i~let~~~~~~~i~~~~~~~~~~~~i~~~~~~Gi~v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~i~~ 271 (289)
+.+.-= ...+.+..+++.+++.|..+...++- ..+++ +-.+++.++ +++.+.++.
T Consensus 84 ~tV~g~------------A~~~TI~~~i~~A~~~~~~v~iDl~~--~~~~~---~~~~~l~~~--gvd~~~~H~ 138 (217)
T COG0269 84 VTVLGA------------ADDATIKKAIKVAKEYGKEVQIDLIG--VWDPE---QRAKWLKEL--GVDQVILHR 138 (217)
T ss_pred EEEEec------------CCHHHHHHHHHHHHHcCCeEEEEeec--CCCHH---HHHHHHHHh--CCCEEEEEe
Confidence 986431 35566777778888888776555542 22333 344455545 455554443
No 232
>PRK13587 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=91.98 E-value=1.8 Score=36.61 Aligned_cols=72 Identities=14% Similarity=0.141 Sum_probs=50.5
Q ss_pred HHHHHHH-cCCcEEEEecccCCCCCCchhHHHHHHHHHHHH-hcCceEEEeCCCCCHHHHHHHHHcCCCeEecCCCch
Q 022946 130 AAQKAKE-AGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIR-DMGMEVCCTLGMLEKHQAIELKKAGLTAYNHNLDTS 205 (289)
Q Consensus 130 ~~~~~~~-~g~~~i~i~~~~~~~~ge~~~~~~l~e~i~~ik-~~~~~i~~~~g~l~~e~l~~L~~aG~~~v~i~let~ 205 (289)
.++.+.+ .|++++++..-+....+.+.++ ++++++. ..++++..-.|.-+.|.++.+.++|++++.+|-++.
T Consensus 36 ~a~~~~~~~Ga~~l~ivDLd~a~~~~~~n~----~~I~~i~~~~~~pi~vGGGIrs~e~v~~~l~~Ga~kvvigt~a~ 109 (234)
T PRK13587 36 SIAYYSQFECVNRIHIVDLIGAKAQHAREF----DYIKSLRRLTTKDIEVGGGIRTKSQIMDYFAAGINYCIVGTKGI 109 (234)
T ss_pred HHHHHHhccCCCEEEEEECcccccCCcchH----HHHHHHHhhcCCeEEEcCCcCCHHHHHHHHHCCCCEEEECchHh
Confidence 4455556 6899999976433222333343 3344433 446788888899999999999999999999887764
No 233
>TIGR03572 WbuZ glycosyl amidation-associated protein WbuZ. This clade of sequences is highly similar to the HisF protein, but generally represents the second HisF homolog in the genome where the other is an authentic HisF observed in the context of a complete histidine biosynthesis operon. The similarity between these WbuZ sequences and true HisFs is such that often the closest match by BLAST of a WbuZ is a HisF. Only by making a multiple sequence alignment is the homology relationship among the WbuZ sequences made apparent. WbuZ genes are invariably observed in the presence of a homolog of the HisH protein (designated WbuY) and a proposed N-acetyl sugar amidotransferase designated in WbuX in E. coli, IfnA in P. aeriginosa and PseA in C. jejuni. Similarly, this trio of genes is invariably found in the context of saccharide biosynthesis loci. It has been shown that the WbuYZ homologs are not essential components of the activity expressed by WbuX, leading to the proposal that these to pr
Probab=91.86 E-value=4.6 Score=33.91 Aligned_cols=73 Identities=18% Similarity=0.186 Sum_probs=48.3
Q ss_pred HHHHHHHHHcCCcEEEEecccCCCCCCchhHHHHHHHHHHHH-hcCceEEEeCCCCCHHHHHHHHHcCCCeEecCCCc
Q 022946 128 MQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIR-DMGMEVCCTLGMLEKHQAIELKKAGLTAYNHNLDT 204 (289)
Q Consensus 128 ~~~~~~~~~~g~~~i~i~~~~~~~~ge~~~~~~l~e~i~~ik-~~~~~i~~~~g~l~~e~l~~L~~aG~~~v~i~let 204 (289)
++.++.+.+.|++.+++..-+..-.+.+.++ ++++.+. ..++++....|.-+.+.++.+.++|++.+.++-..
T Consensus 33 ~~~a~~~~~~g~~~i~i~dl~~~~~~~~~n~----~~~~~i~~~~~~pv~~~ggi~~~~d~~~~~~~G~~~vilg~~~ 106 (232)
T TIGR03572 33 VNAARIYNAKGADELIVLDIDASKRGREPLF----ELISNLAEECFMPLTVGGGIRSLEDAKKLLSLGADKVSINTAA 106 (232)
T ss_pred HHHHHHHHHcCCCEEEEEeCCCcccCCCCCH----HHHHHHHHhCCCCEEEECCCCCHHHHHHHHHcCCCEEEEChhH
Confidence 4444555688999998865333222223343 3333333 34677888889889999999999999999887533
No 234
>PF07745 Glyco_hydro_53: Glycosyl hydrolase family 53; InterPro: IPR011683 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This domain is found in family 53 of the glycosyl hydrolase classification []. These enzymes are endo-1,4- beta-galactanases (3.2.1.89 from EC). The structure of this domain is known [] and has a TIM barrel fold.; GO: 0015926 glucosidase activity; PDB: 1HJQ_A 1HJS_A 1HJU_B 1FHL_A 1FOB_A 2GFT_A 1UR4_B 1UR0_A 1R8L_B 2CCR_A ....
Probab=91.85 E-value=7.1 Score=34.87 Aligned_cols=137 Identities=17% Similarity=0.203 Sum_probs=75.0
Q ss_pred HHHHHcCCcEEEEecccCCCCC-CchhHHHHHHHHHHHHhcCceEEEe---------CCC--------------------
Q 022946 132 QKAKEAGSTRFCMGAAWRDTIG-RKTNFNQILEYVKDIRDMGMEVCCT---------LGM-------------------- 181 (289)
Q Consensus 132 ~~~~~~g~~~i~i~~~~~~~~g-e~~~~~~l~e~i~~ik~~~~~i~~~---------~g~-------------------- 181 (289)
+.+++.|+..|.+-- +-+|.. .-..+++.+++.+++|+.|+++... +|.
T Consensus 31 ~ilk~~G~N~vRlRv-wv~P~~~g~~~~~~~~~~akrak~~Gm~vlldfHYSD~WaDPg~Q~~P~aW~~~~~~~l~~~v~ 109 (332)
T PF07745_consen 31 QILKDHGVNAVRLRV-WVNPYDGGYNDLEDVIALAKRAKAAGMKVLLDFHYSDFWADPGKQNKPAAWANLSFDQLAKAVY 109 (332)
T ss_dssp HHHHHTT--EEEEEE--SS-TTTTTTSHHHHHHHHHHHHHTT-EEEEEE-SSSS--BTTB-B--TTCTSSSHHHHHHHHH
T ss_pred HHHHhcCCCeEEEEe-ccCCcccccCCHHHHHHHHHHHHHCCCeEEEeecccCCCCCCCCCCCCccCCCCCHHHHHHHHH
Confidence 344578988776632 223332 3457789999999999998886542 120
Q ss_pred -CCHHHHHHHHHcCC--CeEecCCCchHHHHhccCCCCCHHHHHHHH----HHHHHcCCceeecEEeec--CCCHHHHHH
Q 022946 182 -LEKHQAIELKKAGL--TAYNHNLDTSREFYSKIITTRSYDERLETL----KHVREAGINVCSGGIIGL--GEAEEDRVG 252 (289)
Q Consensus 182 -l~~e~l~~L~~aG~--~~v~i~let~~~~~~~i~~~~~~~~~~~~i----~~~~~~Gi~v~~~~i~Gl--get~ed~~~ 252 (289)
.+.+++..|+++|+ +.|.+|=|+-..++--......++...+.+ +.+|+.+- .+-+|+-+ +...+....
T Consensus 110 ~yT~~vl~~l~~~G~~pd~VQVGNEin~Gmlwp~g~~~~~~~~a~ll~ag~~AVr~~~p--~~kV~lH~~~~~~~~~~~~ 187 (332)
T PF07745_consen 110 DYTKDVLQALKAAGVTPDMVQVGNEINNGMLWPDGKPSNWDNLAKLLNAGIKAVREVDP--NIKVMLHLANGGDNDLYRW 187 (332)
T ss_dssp HHHHHHHHHHHHTT--ESEEEESSSGGGESTBTTTCTT-HHHHHHHHHHHHHHHHTHSS--TSEEEEEES-TTSHHHHHH
T ss_pred HHHHHHHHHHHHCCCCccEEEeCccccccccCcCCCccCHHHHHHHHHHHHHHHHhcCC--CCcEEEEECCCCchHHHHH
Confidence 15667789999997 578888876432222222234455444443 33444332 23345544 556666677
Q ss_pred HHHHHhcCCCCCCeeeecc
Q 022946 253 LLHTLATLPTHPESVPINA 271 (289)
Q Consensus 253 ~l~~l~~l~~~~~~v~i~~ 271 (289)
.++.+...+...|.++++.
T Consensus 188 ~f~~l~~~g~d~DviGlSy 206 (332)
T PF07745_consen 188 FFDNLKAAGVDFDVIGLSY 206 (332)
T ss_dssp HHHHHHHTTGG-SEEEEEE
T ss_pred HHHHHHhcCCCcceEEEec
Confidence 7777766543445555543
No 235
>cd07947 DRE_TIM_Re_CS Clostridium kluyveri Re-citrate synthase and related proteins, catalytic TIM barrel domain. Re-citrate synthase (Re-CS) is a Clostridium kluyveri enzyme that converts acetyl-CoA and oxaloacetate to citrate. In most organisms, this reaction is catalyzed by Si-citrate synthase which is Si-face stereospecific with respect to C-2 of oxaloacetate, and phylogenetically unrelated to Re-citrate synthase. Re-citrate synthase is also found in a few other strictly anaerobic organisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with
Probab=91.70 E-value=5.8 Score=34.52 Aligned_cols=109 Identities=15% Similarity=0.089 Sum_probs=71.2
Q ss_pred CCHHHHHHHHHHHHHcC-----CcEEEEecccCCCCCCchhHHHHHHHHHHHHhc-CceEEEeCCCCCHHHHHHHHHcCC
Q 022946 122 MTKDAVMQAAQKAKEAG-----STRFCMGAAWRDTIGRKTNFNQILEYVKDIRDM-GMEVCCTLGMLEKHQAIELKKAGL 195 (289)
Q Consensus 122 ~~~eei~~~~~~~~~~g-----~~~i~i~~~~~~~~ge~~~~~~l~e~i~~ik~~-~~~i~~~~g~l~~e~l~~L~~aG~ 195 (289)
.+.++=++.++.+.+.| +++|-+.+ .. +...+.+.++++. .. ...+... ...+.+.++...++|+
T Consensus 18 ~~~~~Kv~i~~~L~~~G~~~~~v~~IE~~s-----~~-~~d~~~v~~~~~~--~~~~~~v~~~-~r~~~~die~A~~~g~ 88 (279)
T cd07947 18 YTVEQIVKIYDYLHELGGGSGVIRQTEFFL-----YT-EKDREAVEACLDR--GYKFPEVTGW-IRANKEDLKLVKEMGL 88 (279)
T ss_pred CCHHHHHHHHHHHHHcCCCCCccceEEecC-----cC-hHHHHHHHHHHHc--CCCCCEEEEE-ecCCHHHHHHHHHcCc
Confidence 38899899999999999 99987632 12 2233444444421 11 1234333 4456777899999999
Q ss_pred CeEecCCCchHH-HHhccCCC--CCHHHHHHHHHHHHHcCCceeecE
Q 022946 196 TAYNHNLDTSRE-FYSKIITT--RSYDERLETLKHVREAGINVCSGG 239 (289)
Q Consensus 196 ~~v~i~let~~~-~~~~i~~~--~~~~~~~~~i~~~~~~Gi~v~~~~ 239 (289)
+.+.+.+-+.+. ...+++.. ...+.+.+.++.+++.|+.+..++
T Consensus 89 ~~v~i~~s~S~~~~~~~~~~t~~e~l~~~~~~v~~a~~~g~~v~~~~ 135 (279)
T cd07947 89 KETGILMSVSDYHIFKKLKMTREEAMEKYLEIVEEALDHGIKPRCHL 135 (279)
T ss_pred CEEEEEEcCCHHHHHHHhCcCHHHHHHHHHHHHHHHHHCCCeEEEEE
Confidence 999987766533 33444432 256777788888999998865444
No 236
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=91.59 E-value=2.9 Score=34.47 Aligned_cols=68 Identities=15% Similarity=0.113 Sum_probs=47.9
Q ss_pred CCHHHHHHHHHHHHHcCCcEEEEecccCCCCCCchhHHHHHHHHHHHHhcCceEEEeCC-CCCHHHHHHHHHcCCCeEe
Q 022946 122 MTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMGMEVCCTLG-MLEKHQAIELKKAGLTAYN 199 (289)
Q Consensus 122 ~~~eei~~~~~~~~~~g~~~i~i~~~~~~~~ge~~~~~~l~e~i~~ik~~~~~i~~~~g-~l~~e~l~~L~~aG~~~v~ 199 (289)
.+.++..+.++.+.+.|++.+.++-. .| ..++.++.+++..-++.+-.| .++.+.++...++|.+.+-
T Consensus 13 ~~~~~a~~ia~al~~gGi~~iEit~~------tp----~a~~~I~~l~~~~~~~~vGAGTVl~~e~a~~ai~aGA~Fiv 81 (201)
T PRK06015 13 DDVEHAVPLARALAAGGLPAIEITLR------TP----AALDAIRAVAAEVEEAIVGAGTILNAKQFEDAAKAGSRFIV 81 (201)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEeCC------Cc----cHHHHHHHHHHHCCCCEEeeEeCcCHHHHHHHHHcCCCEEE
Confidence 58899999999999999998877641 12 234555555532224444445 4899999999999997554
No 237
>COG3589 Uncharacterized conserved protein [Function unknown]
Probab=91.48 E-value=9.6 Score=33.78 Aligned_cols=149 Identities=12% Similarity=0.133 Sum_probs=88.0
Q ss_pred CHHHHHHHHHHHHHcCCcEEEEecccCCCCCC-chhHHHHHHHHHHHHhcCceEEEe--CCC-----CCHHHHHHHHHcC
Q 022946 123 TKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGR-KTNFNQILEYVKDIRDMGMEVCCT--LGM-----LEKHQAIELKKAG 194 (289)
Q Consensus 123 ~~eei~~~~~~~~~~g~~~i~i~~~~~~~~ge-~~~~~~l~e~i~~ik~~~~~i~~~--~g~-----l~~e~l~~L~~aG 194 (289)
+.++-.+.++.+.++|+++|+.+-. .+.++ ...+..+.++++.+++.|+.+.+. +.. .+...+..+.+.|
T Consensus 14 ~~~~~~~Yi~~~~~~Gf~~IFtsl~--~~~~~~~~~~~~~~ell~~Anklg~~vivDvnPsil~~l~~S~~~l~~f~e~G 91 (360)
T COG3589 14 PKEKDIAYIDRMHKYGFKRIFTSLL--IPEEDAELYFHRFKELLKEANKLGLRVIVDVNPSILKELNISLDNLSRFQELG 91 (360)
T ss_pred cchhHHHHHHHHHHcCccceeeecc--cCCchHHHHHHHHHHHHHHHHhcCcEEEEEcCHHHHhhcCCChHHHHHHHHhh
Confidence 4467788888899999999865331 11111 146788999999999999886544 322 3566789999999
Q ss_pred CCeEecCCCch-HHHHhccCCC----CCHHHHHHHHHHHHHc--C---CceeecEEeec--CCCHHHHHHHHHHHhcCCC
Q 022946 195 LTAYNHNLDTS-REFYSKIITT----RSYDERLETLKHVREA--G---INVCSGGIIGL--GEAEEDRVGLLHTLATLPT 262 (289)
Q Consensus 195 ~~~v~i~let~-~~~~~~i~~~----~~~~~~~~~i~~~~~~--G---i~v~~~~i~Gl--get~ed~~~~l~~l~~l~~ 262 (289)
++.+-+..-.. ++.-.-...+ -+....-+-+..+... . +.-|.++-.-. |-+.+.+.+.-+++.+.
T Consensus 92 ~~glRlD~gfS~eei~~ms~~~lkieLN~S~it~~l~~l~~~~an~~nl~~cHNyYPr~yTGLS~e~f~~kn~~fk~~-- 169 (360)
T COG3589 92 VDGLRLDYGFSGEEIAEMSKNPLKIELNASTITELLDSLLAYKANLENLEGCHNYYPRPYTGLSREHFKRKNEIFKEY-- 169 (360)
T ss_pred hhheeecccCCHHHHHHHhcCCeEEEEchhhhHHHHHHHHHhccchhhhhhcccccCCcccCccHHHHHHHHHHHHhc--
Confidence 98887654443 3322221111 1122222233333222 1 22333333322 66889999999998877
Q ss_pred CCCeeeeccceecCCC
Q 022946 263 HPESVPINALLAVKGT 278 (289)
Q Consensus 263 ~~~~v~i~~~~p~pgT 278 (289)
++ ....|++.++.
T Consensus 170 ~i---~t~AFis~~~~ 182 (360)
T COG3589 170 NI---KTAAFISSDGA 182 (360)
T ss_pred CC---ceEEEEecCCc
Confidence 33 34566666665
No 238
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=91.42 E-value=3.6 Score=31.80 Aligned_cols=70 Identities=20% Similarity=0.275 Sum_probs=48.2
Q ss_pred CCHHHHHHHHHHHHHcCCcEEEEecccCCCCCCchhHHHHHHHHHHHHhcCce-EE-EeCCCCCHHHHHHHHHcCCCeEe
Q 022946 122 MTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMGME-VC-CTLGMLEKHQAIELKKAGLTAYN 199 (289)
Q Consensus 122 ~~~eei~~~~~~~~~~g~~~i~i~~~~~~~~ge~~~~~~l~e~i~~ik~~~~~-i~-~~~g~l~~e~l~~L~~aG~~~v~ 199 (289)
.+++|+++.+ .+..+.-|.+++- .| .+...+.++++.+++.|.+ +. .-.|.+..+.+..|++.|++++.
T Consensus 50 ~tp~e~v~aA---~~~dv~vIgvSsl----~g--~h~~l~~~lve~lre~G~~~i~v~~GGvip~~d~~~l~~~G~~~if 120 (143)
T COG2185 50 QTPEEAVRAA---VEEDVDVIGVSSL----DG--GHLTLVPGLVEALREAGVEDILVVVGGVIPPGDYQELKEMGVDRIF 120 (143)
T ss_pred CCHHHHHHHH---HhcCCCEEEEEec----cc--hHHHHHHHHHHHHHHhCCcceEEeecCccCchhHHHHHHhCcceee
Confidence 4788877765 4556666766551 12 1555666677777777765 33 44677888999999999999886
Q ss_pred c
Q 022946 200 H 200 (289)
Q Consensus 200 i 200 (289)
.
T Consensus 121 ~ 121 (143)
T COG2185 121 G 121 (143)
T ss_pred C
Confidence 4
No 239
>PRK14114 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=91.34 E-value=2.3 Score=36.11 Aligned_cols=76 Identities=13% Similarity=0.001 Sum_probs=50.7
Q ss_pred HHHHHHHHHHHcCCcEEEEecccCCCCCCchhHHHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHcCCCeEecCCCch
Q 022946 126 AVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMGMEVCCTLGMLEKHQAIELKKAGLTAYNHNLDTS 205 (289)
Q Consensus 126 ei~~~~~~~~~~g~~~i~i~~~~~~~~ge~~~~~~l~e~i~~ik~~~~~i~~~~g~l~~e~l~~L~~aG~~~v~i~let~ 205 (289)
+.++.++.+.+.|++++++..-+....|.+.+.+-+.++.+. . .++..-.|.-+.+.++.+.++|++++.++-.+.
T Consensus 31 dP~~~A~~~~~~ga~~lhivDLd~a~~g~~~n~~~i~~i~~~---~-~~v~vGGGIrs~e~~~~~l~~Ga~rvvigT~a~ 106 (241)
T PRK14114 31 DPAELVEKLIEEGFTLIHVVDLSKAIENSVENLPVLEKLSEF---A-EHIQIGGGIRSLDYAEKLRKLGYRRQIVSSKVL 106 (241)
T ss_pred CHHHHHHHHHHCCCCEEEEEECCCcccCCcchHHHHHHHHhh---c-CcEEEecCCCCHHHHHHHHHCCCCEEEECchhh
Confidence 335556666789999999976432223444443333333332 2 466777888899999999999999998877654
No 240
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=91.31 E-value=3.6 Score=34.01 Aligned_cols=67 Identities=16% Similarity=0.115 Sum_probs=48.1
Q ss_pred CCHHHHHHHHHHHHHcCCcEEEEecccCCCCCCchhHHHHHHHHHHHHhcCceEEEeCC-CCCHHHHHHHHHcCCCeE
Q 022946 122 MTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMGMEVCCTLG-MLEKHQAIELKKAGLTAY 198 (289)
Q Consensus 122 ~~~eei~~~~~~~~~~g~~~i~i~~~~~~~~ge~~~~~~l~e~i~~ik~~~~~i~~~~g-~l~~e~l~~L~~aG~~~v 198 (289)
.+.++..+.++.+.+.|++.+.+.-. . +...+.++.+++..-++.+-.| .++.+.++...++|.+.+
T Consensus 17 ~~~e~a~~~~~al~~~Gi~~iEit~~------t----~~a~~~i~~l~~~~~~~~vGAGTVl~~~~a~~a~~aGA~Fi 84 (204)
T TIGR01182 17 DDVDDALPLAKALIEGGLRVLEVTLR------T----PVALDAIRLLRKEVPDALIGAGTVLNPEQLRQAVDAGAQFI 84 (204)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEeCC------C----ccHHHHHHHHHHHCCCCEEEEEeCCCHHHHHHHHHcCCCEE
Confidence 58899999999999999998877641 1 2344555555532224444445 489999999999999876
No 241
>PF01208 URO-D: Uroporphyrinogen decarboxylase (URO-D); InterPro: IPR000257 Uroporphyrinogen decarboxylase (URO-D), the fifth enzyme of the haem biosynthetic pathway, catalyses the sequential decarboxylation of the four acetyl side chains of uroporphyrinogen to yield coproporphyrinogen []. URO-D deficiency is responsible for the human genetic diseases familial porphyria cutanea tarda (fPCT) and hepatoerythropoietic porphyria (HEP). The sequence of URO-D has been well conserved throughout evolution. The best conserved region is located in the N-terminal section; it contains a perfectly conserved hexapeptide. There are two arginine residues in this hexapeptide which could be involved in the binding, via salt bridges, to the carboxyl groups of the propionate side chains of the substrate. The crystal structure of human uroporphyrinogen decarboxylase shows it as comprised of a single domain containing a (beta/alpha)8-barrel with a deep active site cleft formed by loops at the C-terminal ends of the barrel strands. URO-D is a dimer in solution. Dimerisation juxtaposes the active site clefts of the monomers, suggesting a functionally important interaction between the catalytic centres [].; GO: 0004853 uroporphyrinogen decarboxylase activity, 0006779 porphyrin-containing compound biosynthetic process; PDB: 4EXQ_A 2INF_C 1J93_A 3GW0_A 1R3Q_A 1JPH_A 1JPI_A 3GVR_A 3GVW_A 3GVV_A ....
Probab=91.22 E-value=4.6 Score=36.03 Aligned_cols=112 Identities=18% Similarity=0.146 Sum_probs=56.7
Q ss_pred HHHHHHHcCCcEEEEecccCCCCCCchh-----HHHHHHHHHHHHhcCc-eEEEe-CCCCCHHHHHHHHHcCCCeEecCC
Q 022946 130 AAQKAKEAGSTRFCMGAAWRDTIGRKTN-----FNQILEYVKDIRDMGM-EVCCT-LGMLEKHQAIELKKAGLTAYNHNL 202 (289)
Q Consensus 130 ~~~~~~~~g~~~i~i~~~~~~~~ge~~~-----~~~l~e~i~~ik~~~~-~i~~~-~g~l~~e~l~~L~~aG~~~v~i~l 202 (289)
.++...+.|++-+.+......... |.. .+.+.++++.+++.+. .+..+ .|. ....++.|+++|++.+++.-
T Consensus 187 ~~~~~~~~G~d~i~~~d~~~~~is-p~~f~e~~~P~~k~i~~~i~~~g~~~~~lH~cG~-~~~~~~~l~~~g~d~~~~~~ 264 (343)
T PF01208_consen 187 YAKAQIEAGADGIFIFDSSGSLIS-PEMFEEFILPYLKKIIDAIKEAGKDPVILHICGN-TTPILDDLADLGADVLSVDE 264 (343)
T ss_dssp HHHHHHHTT-SEEEEEETTGGGS--HHHHHHHTHHHHHHHHHHHHHHETE-EEEEETTH-G-GGHHHHHTSS-SEEEE-T
T ss_pred HHHHHHHhCCCcccccccccCCCC-HHHHHHHHHHHHHHHHHHHHHhCCCceEEEECCc-hHHHHHHHHhcCCCEEEEcC
Confidence 334445678888777553322222 322 2556667777777665 44333 453 34589999999999988753
Q ss_pred Cch-HHHHhccCC--------------CCCHHHHHHHHHHHHHcCCceeecEEeec
Q 022946 203 DTS-REFYSKIIT--------------TRSYDERLETLKHVREAGINVCSGGIIGL 243 (289)
Q Consensus 203 et~-~~~~~~i~~--------------~~~~~~~~~~i~~~~~~Gi~v~~~~i~Gl 243 (289)
... .+..+.+.+ ..+.+++.+.++.+.+.+..-..++|+|.
T Consensus 265 ~~~~~~~~~~~~~~~~l~Gni~~~~~l~gt~eei~~~v~~~i~~~~~~~~gfIl~~ 320 (343)
T PF01208_consen 265 KVDLAEAKRKLGDKIVLMGNIDPVSLLFGTPEEIEEEVKRLIEEGLAGGGGFILSP 320 (343)
T ss_dssp TS-HHHHHHHHTTSSEEEEEB-G-GGGGS-HHHHHHHHHHHHHHTHCTSSSEEBEB
T ss_pred CCCHHHHHHHhCCCeEEECCCCccccccCCHHHHHHHHHHHHHHhcCCCCCEEEeC
Confidence 332 333333211 02446666666665553333334444443
No 242
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=90.99 E-value=8.9 Score=32.54 Aligned_cols=78 Identities=19% Similarity=0.282 Sum_probs=49.8
Q ss_pred CHHHHHHHHHHHHHcCCcEEEEecccCCCCCCchhH--------------HHHHHHHHHHHh-cCceEEE--e-CCCC--
Q 022946 123 TKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNF--------------NQILEYVKDIRD-MGMEVCC--T-LGML-- 182 (289)
Q Consensus 123 ~~eei~~~~~~~~~~g~~~i~i~~~~~~~~ge~~~~--------------~~l~e~i~~ik~-~~~~i~~--~-~g~l-- 182 (289)
+.+...+.++.+.+.|++.+.+.--..+|...-... +...+.++.+++ ..+.+.. . +-.+
T Consensus 12 ~~~~~~~~~~~l~~~Gad~iel~iPfsdPv~DG~~I~~a~~~al~~g~~~~~~~~~~~~vr~~~~~pv~lm~y~n~~~~~ 91 (242)
T cd04724 12 DLETTLEILKALVEAGADIIELGIPFSDPVADGPVIQAASERALANGVTLKDVLELVKEIRKKNTIPIVLMGYYNPILQY 91 (242)
T ss_pred CHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHhhcCCCCEEEEEecCHHHHh
Confidence 668889999999999999998862111112110122 267788888874 3444322 2 1111
Q ss_pred -CHHHHHHHHHcCCCeEec
Q 022946 183 -EKHQAIELKKAGLTAYNH 200 (289)
Q Consensus 183 -~~e~l~~L~~aG~~~v~i 200 (289)
.++.++.++++|++.+.+
T Consensus 92 G~~~fi~~~~~aG~~giii 110 (242)
T cd04724 92 GLERFLRDAKEAGVDGLII 110 (242)
T ss_pred CHHHHHHHHHHCCCcEEEE
Confidence 166789999999999887
No 243
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=90.97 E-value=3.3 Score=31.63 Aligned_cols=69 Identities=17% Similarity=0.195 Sum_probs=46.6
Q ss_pred CCHHHHHHHHHHHHHcCCcEEEEecccCCCCCCchhHHHHHHHHHHHHhcCc---eEEEeCCCCCHHHHHHHHHcCCCeE
Q 022946 122 MTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMGM---EVCCTLGMLEKHQAIELKKAGLTAY 198 (289)
Q Consensus 122 ~~~eei~~~~~~~~~~g~~~i~i~~~~~~~~ge~~~~~~l~e~i~~ik~~~~---~i~~~~g~l~~e~l~~L~~aG~~~v 198 (289)
.++|++++.+. +.+.+-+.+++-. ....+.+.++++.+++.+. .+.. .|....+..++|+++|++.+
T Consensus 40 ~s~e~~v~aa~---e~~adii~iSsl~------~~~~~~~~~~~~~L~~~g~~~i~viv-GG~~~~~~~~~l~~~Gvd~~ 109 (132)
T TIGR00640 40 QTPEEIARQAV---EADVHVVGVSSLA------GGHLTLVPALRKELDKLGRPDILVVV-GGVIPPQDFDELKEMGVAEI 109 (132)
T ss_pred CCHHHHHHHHH---HcCCCEEEEcCch------hhhHHHHHHHHHHHHhcCCCCCEEEE-eCCCChHhHHHHHHCCCCEE
Confidence 57888777654 6688888887622 1245566666777775543 3333 55567778899999999887
Q ss_pred ec
Q 022946 199 NH 200 (289)
Q Consensus 199 ~i 200 (289)
..
T Consensus 110 ~~ 111 (132)
T TIGR00640 110 FG 111 (132)
T ss_pred EC
Confidence 53
No 244
>PF09370 TIM-br_sig_trns: TIM-barrel signal transduction protein; InterPro: IPR009215 Members of this family are predicted to have a TIM barrel fold, based on PSI-BLAST analysis (iteration 4) and on SCOP prediction (using SMART). Interestingly, this novel domain also exists as an N-terminal domain of sigma54-dependent transcriptional activators (enhancer-binding proteins). Because sigma54 dependent activators typically have a three-domain structure: the variable N-terminal regulatory (activation) domain involved in signal recognition/receiving, the central AAA-type ATPase domain, and the DNA-binding domain (see PIRSF003187 from PIRSF, PIRSF005263 from PIRSF, PIRSF003184 from PIRSF, PIRSF005263 from PIRSF, IPR014443 from INTERPRO for details), the proteins of the current entry may be predicted to play a role in signal recognition/receiving and signal transduction.; PDB: 2P10_C.
Probab=90.95 E-value=0.65 Score=39.64 Aligned_cols=97 Identities=21% Similarity=0.255 Sum_probs=53.1
Q ss_pred HHHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHcCCCeEec--CCCchHHHHhccCCCCCHHHHHHHHHHHHHcCCce
Q 022946 158 FNQILEYVKDIRDMGMEVCCTLGMLEKHQAIELKKAGLTAYNH--NLDTSREFYSKIITTRSYDERLETLKHVREAGINV 235 (289)
Q Consensus 158 ~~~l~e~i~~ik~~~~~i~~~~g~l~~e~l~~L~~aG~~~v~i--~let~~~~~~~i~~~~~~~~~~~~i~~~~~~Gi~v 235 (289)
++.=+++++..++.++ .+....++.+..++|.+||.|.+.. |+-+.-.+ ...+..+.++..+.++.+.++-..+
T Consensus 136 y~~EVemi~~A~~~gl--~T~~yvf~~e~A~~M~~AGaDiiv~H~GlT~gG~~--Ga~~~~sl~~a~~~~~~i~~aa~~v 211 (268)
T PF09370_consen 136 YDREVEMIRKAHEKGL--FTTAYVFNEEQARAMAEAGADIIVAHMGLTTGGSI--GAKTALSLEEAAERIQEIFDAARAV 211 (268)
T ss_dssp HHHHHHHHHHHHHTT---EE--EE-SHHHHHHHHHHT-SEEEEE-SS------------S--HHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHCCC--eeeeeecCHHHHHHHHHcCCCEEEecCCccCCCCc--CccccCCHHHHHHHHHHHHHHHHHh
Confidence 3444556666666665 2334458999999999999998864 55433111 1123457888888888877765555
Q ss_pred eecEEe----ecCCCHHHHHHHHHHHh
Q 022946 236 CSGGII----GLGEAEEDRVGLLHTLA 258 (289)
Q Consensus 236 ~~~~i~----Glget~ed~~~~l~~l~ 258 (289)
+.++|+ |--.+++|....++...
T Consensus 212 ~~dii~l~hGGPI~~p~D~~~~l~~t~ 238 (268)
T PF09370_consen 212 NPDIIVLCHGGPIATPEDAQYVLRNTK 238 (268)
T ss_dssp -TT-EEEEECTTB-SHHHHHHHHHH-T
T ss_pred CCCeEEEEeCCCCCCHHHHHHHHhcCC
Confidence 555444 22568888887777654
No 245
>PRK13397 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=90.87 E-value=8.2 Score=32.93 Aligned_cols=106 Identities=20% Similarity=0.311 Sum_probs=71.3
Q ss_pred CHHHHHHHHHHHHHcCCcEEEEecccCCCCCCchhH----HHHHHHHHHHH-hcCceEEEeCCCCCHHHHHHHHHcCCCe
Q 022946 123 TKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNF----NQILEYVKDIR-DMGMEVCCTLGMLEKHQAIELKKAGLTA 197 (289)
Q Consensus 123 ~~eei~~~~~~~~~~g~~~i~i~~~~~~~~ge~~~~----~~l~e~i~~ik-~~~~~i~~~~g~l~~e~l~~L~~aG~~~ 197 (289)
+.|.+++.++.+++.|+. +.+.|.+. +--.|..+ .+-++.++.++ +.|+.+.++. .+.+.++.+.+ .+|.
T Consensus 27 s~e~~~~~a~~~~~~g~~-~~r~g~~k-pRts~~sf~G~G~~gl~~L~~~~~~~Gl~~~Tev--~d~~~v~~~~e-~vdi 101 (250)
T PRK13397 27 SYDHIRLAASSAKKLGYN-YFRGGAYK-PRTSAASFQGLGLQGIRYLHEVCQEFGLLSVSEI--MSERQLEEAYD-YLDV 101 (250)
T ss_pred CHHHHHHHHHHHHHcCCC-EEEecccC-CCCCCcccCCCCHHHHHHHHHHHHHcCCCEEEee--CCHHHHHHHHh-cCCE
Confidence 678899999999999985 44554432 21112111 22444444444 7899887754 67888999988 5999
Q ss_pred EecC-CCch-HHHHhccCC---------C--CCHHHHHHHHHHHHHcCC
Q 022946 198 YNHN-LDTS-REFYSKIIT---------T--RSYDERLETLKHVREAGI 233 (289)
Q Consensus 198 v~i~-let~-~~~~~~i~~---------~--~~~~~~~~~i~~~~~~Gi 233 (289)
+.++ -+.. -++++.+.+ + .+.++|+.+++.+.+.|-
T Consensus 102 lqIgs~~~~n~~LL~~va~tgkPVilk~G~~~t~~e~~~A~e~i~~~Gn 150 (250)
T PRK13397 102 IQVGARNMQNFEFLKTLSHIDKPILFKRGLMATIEEYLGALSYLQDTGK 150 (250)
T ss_pred EEECcccccCHHHHHHHHccCCeEEEeCCCCCCHHHHHHHHHHHHHcCC
Confidence 9985 3443 555555542 2 268999999999999886
No 246
>TIGR02129 hisA_euk phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase, eukaryotic type. This enzyme acts in the biosynthesis of histidine and has been characterized in S. cerevisiae and Arabidopsis where it complements the E. coli HisA gene. In eukaryotes the gene is known as HIS6. In bacteria, this gene is found in Fibrobacter succinogenes, presumably due to lateral gene transfer from plants in the rumen gut.
Probab=90.71 E-value=1.7 Score=37.15 Aligned_cols=65 Identities=15% Similarity=0.041 Sum_probs=47.8
Q ss_pred HHHHHHHHHcCCcEEEEecccCCCCCCchhHHHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHcCCCeEecCC
Q 022946 128 MQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMGMEVCCTLGMLEKHQAIELKKAGLTAYNHNL 202 (289)
Q Consensus 128 ~~~~~~~~~~g~~~i~i~~~~~~~~ge~~~~~~l~e~i~~ik~~~~~i~~~~g~l~~e~l~~L~~aG~~~v~i~l 202 (289)
++.++...+.|++.++++. .|++ +.+-+.++++. .++++....|.-+ +.++.+.++|++++.+|=
T Consensus 41 ~~~A~~~~~~Ga~~lHvVD-----Lg~~-n~~~i~~i~~~---~~~~v~vGGGIr~-e~v~~~l~aGa~rVvIGS 105 (253)
T TIGR02129 41 SYYAKLYKDDGVKGCHVIM-----LGPN-NDDAAKEALHA---YPGGLQVGGGIND-TNAQEWLDEGASHVIVTS 105 (253)
T ss_pred HHHHHHHHHcCCCEEEEEE-----CCCC-cHHHHHHHHHh---CCCCEEEeCCcCH-HHHHHHHHcCCCEEEECc
Confidence 4445567789999999986 2555 65555555443 4677877888765 999999999999999864
No 247
>TIGR00284 dihydropteroate synthase-related protein. This protein has been found so far only in the Archaea, and in particular in those archaea that lack a bacterial-type dihydropteroate synthase. The central region of this protein shows considerable homology to the amino-terminal half of dihydropteroate synthases, while the carboxyl-terminal region shows homology to the small, uncharacterized protein slr0651 of Synechocystis PCC6803.
Probab=90.70 E-value=7.8 Score=36.64 Aligned_cols=124 Identities=18% Similarity=0.174 Sum_probs=81.7
Q ss_pred HHHHHHHHHHHHcCCcEEEEecccCCCCCCchhHHHHHHHHHHHHhc-CceEEEeCCCCCHHHHHHHHHcCCCeEecCCC
Q 022946 125 DAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDM-GMEVCCTLGMLEKHQAIELKKAGLTAYNHNLD 203 (289)
Q Consensus 125 eei~~~~~~~~~~g~~~i~i~~~~~~~~ge~~~~~~l~e~i~~ik~~-~~~i~~~~g~l~~e~l~~L~~aG~~~v~i~le 203 (289)
+++.+.++...+.|++-|-++++.. .| ..+++...++.+++. ++.+ +..+.+.+.+++-.++|.+.|+ ++.
T Consensus 165 ~~i~~~A~~~~~~GADIIDIG~~st----~p-~~~~v~~~V~~l~~~~~~pI--SIDT~~~~v~eaAL~aGAdiIN-sVs 236 (499)
T TIGR00284 165 DGIEGLAARMERDGADMVALGTGSF----DD-DPDVVKEKVKTALDALDSPV--IADTPTLDELYEALKAGASGVI-MPD 236 (499)
T ss_pred HHHHHHHHHHHHCCCCEEEECCCcC----CC-cHHHHHHHHHHHHhhCCCcE--EEeCCCHHHHHHHHHcCCCEEE-ECC
Confidence 8899999999999999888866432 22 334678888877754 4443 4566788888888888998776 333
Q ss_pred ch--HHHHhccC---------C---CCCHHHHHHHHHHHHHcCC-ceeecEEeecCCCHHHHHHHHHHHh
Q 022946 204 TS--REFYSKII---------T---TRSYDERLETLKHVREAGI-NVCSGGIIGLGEAEEDRVGLLHTLA 258 (289)
Q Consensus 204 t~--~~~~~~i~---------~---~~~~~~~~~~i~~~~~~Gi-~v~~~~i~Glget~ed~~~~l~~l~ 258 (289)
.. +++.+.+. + ...++...+.++.+.+.|+ ++..+-++|. ...++.+.+..++
T Consensus 237 ~~~~d~~~~l~a~~g~~vVlm~~~~~~~~~~l~~~ie~a~~~Gi~~IIlDPglg~--~~~~l~~sL~~l~ 304 (499)
T TIGR00284 237 VENAVELASEKKLPEDAFVVVPGNQPTNYEELAKAVKKLRTSGYSKVAADPSLSP--PLLGLLESIIRFR 304 (499)
T ss_pred ccchhHHHHHHHHcCCeEEEEcCCCCchHHHHHHHHHHHHHCCCCcEEEeCCCCc--chHHHHHHHHHHH
Confidence 32 43322111 1 2346778889999999999 4555555554 2334666666665
No 248
>cd07942 DRE_TIM_LeuA Mycobacterium tuberculosis LeuA3 and related proteins, N-terminal catalytic TIM barrel domain. Alpha-isopropylmalate synthase (LeuA), a key enzyme in leucine biosynthesis, catalyzes the first committed step in the pathway, converting acetyl-CoA and alpha-ketoisovalerate to alpha-isopropyl malate and CoA. Although the reaction catalyzed by LeuA is similar to that of the Arabidopsis thaliana IPMS1 protein, the two fall into phylogenetically distinct families within the same superfamily. LeuA has and N-terminal TIM barrel catalytic domain, a helical linker domain, and a C-terminal regulatory domain. LeuA forms a homodimer in which the linker domain of one monomer sits over the catalytic domain of the other, inserting residues into the active site that may be important for catalysis. Homologs of LeuA are found in bacteria as well as fungi. This family includes alpha-isopropylmalate synthases I (LEU4) and II (LEU9) from Saccharomyces cerevisiae. This family belong
Probab=90.68 E-value=11 Score=32.94 Aligned_cols=133 Identities=9% Similarity=0.042 Sum_probs=74.7
Q ss_pred cCCCCHHHHHHHHHHHHHcCCcEEEEecccCCCCCCchhHHHHHHHHHHHHhc-----CceEEEeCCCCCHHHHHHHHHc
Q 022946 119 QKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDM-----GMEVCCTLGMLEKHQAIELKKA 193 (289)
Q Consensus 119 ~~~~~~eei~~~~~~~~~~g~~~i~i~~~~~~~~ge~~~~~~l~e~i~~ik~~-----~~~i~~~~g~l~~e~l~~L~~a 193 (289)
...++.++=++.++.+.+.|++.+.++. |.-. +.-.+.++.+.+. +.++.. ......+.++.-.++
T Consensus 17 g~~~s~~~Ki~ia~~L~~~Gv~~IE~gf----P~~~----~~e~e~~~~i~~~~~~~~~~~~~a-l~r~~~~die~a~~~ 87 (284)
T cd07942 17 AEPMSVEQKLRFFKLLVKIGFKEIEVGF----PSAS----QTDFDFVRELIEEDLIPDDVTIQV-LTQAREDLIERTFEA 87 (284)
T ss_pred CCCCCHHHHHHHHHHHHHcCCCEEEEeC----CCCC----HHHHHHHHHHHHccCCCCCCEEEE-EcCCChhhHHHHHHH
Confidence 3448999999999999999999997752 2211 2223444444322 333322 222234435666665
Q ss_pred --CCC--eEecCCCchH-HHHhccCCC--CCHHHHHHHHHHHHHcCCc-eeecEEeec-C-----CCHHHHHHHHHHHhc
Q 022946 194 --GLT--AYNHNLDTSR-EFYSKIITT--RSYDERLETLKHVREAGIN-VCSGGIIGL-G-----EAEEDRVGLLHTLAT 259 (289)
Q Consensus 194 --G~~--~v~i~let~~-~~~~~i~~~--~~~~~~~~~i~~~~~~Gi~-v~~~~i~Gl-g-----et~ed~~~~l~~l~~ 259 (289)
|++ .+.+.+-+++ -...+++.+ ...+.+.+.++.+++.|+. +.+.+-+-+ + -..+.+.+.++.+.+
T Consensus 88 ~~~~~~~~v~i~~~~Sd~h~~~~~~~s~~e~~~~~~~~v~~a~~~g~~~~~~~~~~~~~~EDasr~~~~~l~~~~~~~~~ 167 (284)
T cd07942 88 LRGAKKAIVHLYNATSPLQRRVVFGKSKEEIIEIAVDGAKLVKELAAKYPETDWRFEYSPESFSDTELDFALEVCEAVID 167 (284)
T ss_pred hCCCCCCEEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcccccCceEEEEECCccCCCCCHHHHHHHHHHHHH
Confidence 665 5776666653 233344432 2456677788888998875 222333333 3 234556666666654
Q ss_pred C
Q 022946 260 L 260 (289)
Q Consensus 260 l 260 (289)
.
T Consensus 168 ~ 168 (284)
T cd07942 168 V 168 (284)
T ss_pred h
Confidence 4
No 249
>PRK07114 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=90.47 E-value=8.9 Score=32.14 Aligned_cols=72 Identities=11% Similarity=0.069 Sum_probs=49.9
Q ss_pred CCHHHHHHHHHHHHHcCCcEEEEecccCCCCCCchhHHHHHHHHHHHHhcCceEEEeCC-CCCHHHHHHHHHcCCCeEe
Q 022946 122 MTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMGMEVCCTLG-MLEKHQAIELKKAGLTAYN 199 (289)
Q Consensus 122 ~~~eei~~~~~~~~~~g~~~i~i~~~~~~~~ge~~~~~~l~e~i~~ik~~~~~i~~~~g-~l~~e~l~~L~~aG~~~v~ 199 (289)
.+.++..+.++.+.+.|++.+.++-. .|...+.+.++.+.+++...++.+-.| .++.+.++...++|.+.+-
T Consensus 24 ~~~~~a~~~~~al~~gGi~~iEiT~~------tp~a~~~i~~l~~~~~~~~p~~~vGaGTVl~~e~a~~a~~aGA~FiV 96 (222)
T PRK07114 24 ADVEVAKKVIKACYDGGARVFEFTNR------GDFAHEVFAELVKYAAKELPGMILGVGSIVDAATAALYIQLGANFIV 96 (222)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEeCC------CCcHHHHHHHHHHHHHhhCCCeEEeeEeCcCHHHHHHHHHcCCCEEE
Confidence 58899999999999999998877541 133444454444445433334545555 4899999999999997554
No 250
>COG0107 HisF Imidazoleglycerol-phosphate synthase [Amino acid transport and metabolism]
Probab=90.44 E-value=2.6 Score=35.25 Aligned_cols=78 Identities=14% Similarity=0.167 Sum_probs=57.5
Q ss_pred CHHHHHHHHHHHHHcCCcEEEEecccCCCCCCchhHHHHHHHHHHHH-hcCceEEEeCCCCCHHHHHHHHHcCCCeEecC
Q 022946 123 TKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIR-DMGMEVCCTLGMLEKHQAIELKKAGLTAYNHN 201 (289)
Q Consensus 123 ~~eei~~~~~~~~~~g~~~i~i~~~~~~~~ge~~~~~~l~e~i~~ik-~~~~~i~~~~g~l~~e~l~~L~~aG~~~v~i~ 201 (289)
..-..++.++...+.|+++++|..-.-. +...+-+++.+++.. ...+++++-.|.-+.+.++++..+|.|-|+++
T Consensus 28 d~GDpVelA~~Y~e~GADElvFlDItAs----~~gr~~~~~vv~r~A~~vfiPltVGGGI~s~eD~~~ll~aGADKVSIN 103 (256)
T COG0107 28 DAGDPVELAKRYNEEGADELVFLDITAS----SEGRETMLDVVERVAEQVFIPLTVGGGIRSVEDARKLLRAGADKVSIN 103 (256)
T ss_pred hcCChHHHHHHHHHcCCCeEEEEecccc----cccchhHHHHHHHHHhhceeeeEecCCcCCHHHHHHHHHcCCCeeeeC
Confidence 3445577778888999999998652222 233456677777665 56888888888889999999999999988886
Q ss_pred CCc
Q 022946 202 LDT 204 (289)
Q Consensus 202 let 204 (289)
-.+
T Consensus 104 saA 106 (256)
T COG0107 104 SAA 106 (256)
T ss_pred hhH
Confidence 544
No 251
>TIGR03586 PseI pseudaminic acid synthase.
Probab=90.40 E-value=13 Score=33.24 Aligned_cols=109 Identities=18% Similarity=0.287 Sum_probs=67.3
Q ss_pred CHHHHHHHHHHHHHcCCcEEEEecccCCC----------------C-CCc---------hhHHHHHHHHHHHHhcCceEE
Q 022946 123 TKDAVMQAAQKAKEAGSTRFCMGAAWRDT----------------I-GRK---------TNFNQILEYVKDIRDMGMEVC 176 (289)
Q Consensus 123 ~~eei~~~~~~~~~~g~~~i~i~~~~~~~----------------~-ge~---------~~~~~l~e~i~~ik~~~~~i~ 176 (289)
+.+...+.++.+.+.|.+-|-|+.-.... . ++. ...++..++.+..++.|+.+.
T Consensus 15 ~~~~A~~lI~~A~~aGAdavKFQ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~~e~~~~L~~~~~~~Gi~~~ 94 (327)
T TIGR03586 15 SLERALAMIEAAKAAGADAIKLQTYTPDTITLDSDRPEFIIKGGLWDGRTLYDLYQEAHTPWEWHKELFERAKELGLTIF 94 (327)
T ss_pred hHHHHHHHHHHHHHhCCCEEEeeeccHHHhhccccccccccccCCcCCccHHHHHHHhhCCHHHHHHHHHHHHHhCCcEE
Confidence 67888888888889998877765421000 0 000 012333444444556788887
Q ss_pred EeCCCCCHHHHHHHHHcCCCeEecC-CCch-HHHHhccCC---------C-CCHHHHHHHHHHHHHcCC
Q 022946 177 CTLGMLEKHQAIELKKAGLTAYNHN-LDTS-REFYSKIIT---------T-RSYDERLETLKHVREAGI 233 (289)
Q Consensus 177 ~~~g~l~~e~l~~L~~aG~~~v~i~-let~-~~~~~~i~~---------~-~~~~~~~~~i~~~~~~Gi 233 (289)
++. ++.+.++.|.+.|++.+.++ -+.. -.+++.+.. + .+.+++..+++.+.+.|-
T Consensus 95 stp--fd~~svd~l~~~~v~~~KI~S~~~~n~~LL~~va~~gkPvilstG~~t~~Ei~~Av~~i~~~g~ 161 (327)
T TIGR03586 95 SSP--FDETAVDFLESLDVPAYKIASFEITDLPLIRYVAKTGKPIIMSTGIATLEEIQEAVEACREAGC 161 (327)
T ss_pred Ecc--CCHHHHHHHHHcCCCEEEECCccccCHHHHHHHHhcCCcEEEECCCCCHHHHHHHHHHHHHCCC
Confidence 765 67888999999999988874 3433 334443322 1 256777777777776665
No 252
>KOG1160 consensus Fe-S oxidoreductase [Energy production and conversion]
Probab=90.35 E-value=2.6 Score=38.54 Aligned_cols=102 Identities=15% Similarity=0.166 Sum_probs=60.7
Q ss_pred CCchhHHHHHHHHHHHHhcCce-EEEeCCCCCHHHHHHHHHcCCCeEecCCCch-HHHHhccCCCCC---HHHHHHHHHH
Q 022946 153 GRKTNFNQILEYVKDIRDMGME-VCCTLGMLEKHQAIELKKAGLTAYNHNLDTS-REFYSKIITTRS---YDERLETLKH 227 (289)
Q Consensus 153 ge~~~~~~l~e~i~~ik~~~~~-i~~~~g~l~~e~l~~L~~aG~~~v~i~let~-~~~~~~i~~~~~---~~~~~~~i~~ 227 (289)
|+|..+..+-..++.+.+..+. ..++|... .+.+..++. +..+.++++.. ...+.++.++-. ++..++.++.
T Consensus 363 gepi~yp~in~f~k~lH~k~issflvtnaq~-pe~~rnvk~--vtqlyvsvda~Tktslk~idrPlfkdFwEr~~d~l~~ 439 (601)
T KOG1160|consen 363 GEPIMYPEINPFAKLLHQKLISSFLVTNAQF-PEDIRNVKP--VTQLYVSVDASTKTSLKKIDRPLFKDFWERFLDSLKA 439 (601)
T ss_pred cccccchhhhHHHHHHHhccchHHhcccccC-hHHHhchhh--hheeEEEEeecchhhhcCCCCchHHHHHHHHHHHHHH
Confidence 4566667777777777655544 33445433 555556665 57888999998 888888876532 4556666666
Q ss_pred HHHc-CCceeecEEeecCCCHHHHHHHHHHHh
Q 022946 228 VREA-GINVCSGGIIGLGEAEEDRVGLLHTLA 258 (289)
Q Consensus 228 ~~~~-Gi~v~~~~i~Glget~ed~~~~l~~l~ 258 (289)
+++. ...+.-.-++|.+ +-+|+.+-.+.+.
T Consensus 440 lk~K~qrtvyRlTlVkg~-n~dd~~Ayfnlv~ 470 (601)
T KOG1160|consen 440 LKKKQQRTVYRLTLVKGW-NSDDLPAYFNLVS 470 (601)
T ss_pred HHHhhcceEEEEEEeccc-cccccHHHHHHHh
Confidence 6653 3333333455543 3345555555543
No 253
>PRK13585 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=90.00 E-value=8.3 Score=32.51 Aligned_cols=74 Identities=15% Similarity=0.093 Sum_probs=49.3
Q ss_pred HHHHHHHHHHcCCcEEEEecccCCCCCCchhHHHHHHHHHHHH-hcCceEEEeCCCCCHHHHHHHHHcCCCeEecCCCc
Q 022946 127 VMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIR-DMGMEVCCTLGMLEKHQAIELKKAGLTAYNHNLDT 204 (289)
Q Consensus 127 i~~~~~~~~~~g~~~i~i~~~~~~~~ge~~~~~~l~e~i~~ik-~~~~~i~~~~g~l~~e~l~~L~~aG~~~v~i~let 204 (289)
.++.++.+.+.|++.+.+..-+.... ......+.++.+. ..++.+....|.-+.+.++.+.++|++.+.++-..
T Consensus 34 ~~e~a~~~~~~G~~~l~i~dl~~~~~----~~~~~~~~i~~i~~~~~~~l~v~GGi~~~~~~~~~~~~Ga~~v~iGs~~ 108 (241)
T PRK13585 34 PVEVAKRWVDAGAETLHLVDLDGAFE----GERKNAEAIEKIIEAVGVPVQLGGGIRSAEDAASLLDLGVDRVILGTAA 108 (241)
T ss_pred HHHHHHHHHHcCCCEEEEEechhhhc----CCcccHHHHHHHHHHcCCcEEEcCCcCCHHHHHHHHHcCCCEEEEChHH
Confidence 34455556678999998865221111 2223344444443 45778888888889999999999999999887644
No 254
>PRK01033 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=89.89 E-value=9.7 Score=32.65 Aligned_cols=72 Identities=17% Similarity=0.219 Sum_probs=48.8
Q ss_pred HHHHHHHHHcCCcEEEEecccCCCCCCchhHHHHHHHHHHHH-hcCceEEEeCCCCCHHHHHHHHHcCCCeEecCCC
Q 022946 128 MQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIR-DMGMEVCCTLGMLEKHQAIELKKAGLTAYNHNLD 203 (289)
Q Consensus 128 ~~~~~~~~~~g~~~i~i~~~~~~~~ge~~~~~~l~e~i~~ik-~~~~~i~~~~g~l~~e~l~~L~~aG~~~v~i~le 203 (289)
++.++.+.+.|++++++..-+..-.+...++ ++++.+. ..++++....|.-+.+.++++..+|++.+.+|-.
T Consensus 33 ~~~a~~~~~~g~~~l~i~Dl~~~~~~~~~n~----~~i~~i~~~~~~pv~~gGGi~s~~d~~~l~~~G~~~vvigs~ 105 (258)
T PRK01033 33 INAVRIFNEKEVDELIVLDIDASKRGSEPNY----ELIENLASECFMPLCYGGGIKTLEQAKKIFSLGVEKVSINTA 105 (258)
T ss_pred HHHHHHHHHcCCCEEEEEECCCCcCCCcccH----HHHHHHHHhCCCCEEECCCCCCHHHHHHHHHCCCCEEEEChH
Confidence 4455567789999998875433212222333 3344433 3467777788888899999999999999988853
No 255
>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit.
Probab=89.86 E-value=3 Score=35.67 Aligned_cols=74 Identities=15% Similarity=0.167 Sum_probs=51.6
Q ss_pred HHHHHHHHHcCCcEEEEecccCCCCCCchhHHHHHHHHHHHH-hcCceEEEeCCCCCHHHHHHHHHcCCCeEecCCCch
Q 022946 128 MQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIR-DMGMEVCCTLGMLEKHQAIELKKAGLTAYNHNLDTS 205 (289)
Q Consensus 128 ~~~~~~~~~~g~~~i~i~~~~~~~~ge~~~~~~l~e~i~~ik-~~~~~i~~~~g~l~~e~l~~L~~aG~~~v~i~let~ 205 (289)
++.++.+.+.|++.+++..-+....+ ...-+++++.+. ..++++....|.-+.+.++.+..+|++.+.+|-...
T Consensus 33 ~~~a~~~~~~G~~~l~v~Dl~~~~~~----~~~n~~~i~~i~~~~~~pv~~~GGi~s~~d~~~~~~~Ga~~vivgt~~~ 107 (254)
T TIGR00735 33 VELAQRYDEEGADELVFLDITASSEG----RTTMIDVVERTAETVFIPLTVGGGIKSIEDVDKLLRAGADKVSINTAAV 107 (254)
T ss_pred HHHHHHHHHcCCCEEEEEcCCccccc----ChhhHHHHHHHHHhcCCCEEEECCCCCHHHHHHHHHcCCCEEEEChhHh
Confidence 44445556789999988753322112 223455555555 346788888999999999999999999999886553
No 256
>TIGR01305 GMP_reduct_1 guanosine monophosphate reductase, eukaryotic. A deep split separates two families of GMP reductase. This family includes both eukaryotic and some proteobacterial sequences, while the other family contains other bacterial sequences.
Probab=89.78 E-value=4.9 Score=35.73 Aligned_cols=100 Identities=15% Similarity=0.111 Sum_probs=59.8
Q ss_pred HHHHHHHHc--CCcEEEEecccCCCCCCchhHHHHHHHHHHHHhcCceEEEeCC-CCCHHHHHHHHHcCCCeEecCCCch
Q 022946 129 QAAQKAKEA--GSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMGMEVCCTLG-MLEKHQAIELKKAGLTAYNHNLDTS 205 (289)
Q Consensus 129 ~~~~~~~~~--g~~~i~i~~~~~~~~ge~~~~~~l~e~i~~ik~~~~~i~~~~g-~l~~e~l~~L~~aG~~~v~i~let~ 205 (289)
+.++.+.+. +++.+++-..- | +-..+++.++.+|+......+-.| ..+.+..+.|.++|+|.|.+|+-..
T Consensus 110 er~~~L~~a~~~~d~iviD~Ah----G---hs~~~i~~ik~ir~~~p~~~viaGNV~T~e~a~~Li~aGAD~ikVgiGpG 182 (343)
T TIGR01305 110 EKMTSILEAVPQLKFICLDVAN----G---YSEHFVEFVKLVREAFPEHTIMAGNVVTGEMVEELILSGADIVKVGIGPG 182 (343)
T ss_pred HHHHHHHhcCCCCCEEEEECCC----C---cHHHHHHHHHHHHhhCCCCeEEEecccCHHHHHHHHHcCCCEEEEcccCC
Confidence 334444554 57888774311 2 557899999999965332222334 6899999999999999998885432
Q ss_pred -HHHHhccCC-C-CCHHHHHHHHHHHHHcCCce
Q 022946 206 -REFYSKIIT-T-RSYDERLETLKHVREAGINV 235 (289)
Q Consensus 206 -~~~~~~i~~-~-~~~~~~~~~i~~~~~~Gi~v 235 (289)
-=.-+.+.. + .....+.+..+.+++.|+++
T Consensus 183 SicttR~~~Gvg~pqltAv~~~a~aa~~~~v~V 215 (343)
T TIGR01305 183 SVCTTRTKTGVGYPQLSAVIECADAAHGLKGHI 215 (343)
T ss_pred CcccCceeCCCCcCHHHHHHHHHHHhccCCCeE
Confidence 111111111 1 24555566666666656554
No 257
>PF00977 His_biosynth: Histidine biosynthesis protein; InterPro: IPR006062 Histidine is formed by several complex and distinct biochemical reactions catalysed by eight enzymes. Proteins involved in steps 4 and 6 of the histidine biosynthesis pathway are contained in one family. These enzymes are called His6 and His7 in eukaryotes and HisA and HisF in prokaryotes. HisA is a phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (5.3.1.16 from EC), involved in the fourth step of histidine biosynthesis. The bacterial HisF protein is a cyclase which catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate during the sixth step of histidine biosynthesis. The yeast His7 protein is a bifunctional protein which catalyzes an amido-transferase reaction that generates imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide. The latter is the ribonucleotide used for purine biosynthesis. The enzyme also catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate, and is involved in the fifth and sixth steps in histidine biosynthesis.; GO: 0000105 histidine biosynthetic process; PDB: 2VEP_A 2X30_A 1VZW_A 2WJZ_A 2LLE_A 2A0N_A 1THF_D 1GPW_E 1VH7_A 1KA9_F ....
Probab=89.77 E-value=1 Score=37.96 Aligned_cols=77 Identities=19% Similarity=0.184 Sum_probs=51.5
Q ss_pred CCHHHHHHHHHHHHHcCCcEEEEecccCCCCCCchhHHHHHHHHHHHH-hcCceEEEeCCCCCHHHHHHHHHcCCCeEec
Q 022946 122 MTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIR-DMGMEVCCTLGMLEKHQAIELKKAGLTAYNH 200 (289)
Q Consensus 122 ~~~eei~~~~~~~~~~g~~~i~i~~~~~~~~ge~~~~~~l~e~i~~ik-~~~~~i~~~~g~l~~e~l~~L~~aG~~~v~i 200 (289)
-+|.+ .++.+.+.|++++++..-+....|. ..-.++++.+. ..++++....|.-+.+.++++.++|++++.+
T Consensus 29 ~dP~~---~a~~~~~~g~~~l~ivDLdaa~~g~----~~n~~~i~~i~~~~~~~i~vgGGIrs~ed~~~ll~~Ga~~Vvi 101 (229)
T PF00977_consen 29 GDPVE---VAKAFNEQGADELHIVDLDAAKEGR----GSNLELIKEIAKETGIPIQVGGGIRSIEDAERLLDAGADRVVI 101 (229)
T ss_dssp CCHHH---HHHHHHHTT-SEEEEEEHHHHCCTH----HHHHHHHHHHHHHSSSEEEEESSE-SHHHHHHHHHTT-SEEEE
T ss_pred cCHHH---HHHHHHHcCCCEEEEEEccCcccCc----hhHHHHHHHHHhcCCccEEEeCccCcHHHHHHHHHhCCCEEEe
Confidence 35544 4445568899999997632211122 33445555555 4578898899999999999999999999998
Q ss_pred CCCch
Q 022946 201 NLDTS 205 (289)
Q Consensus 201 ~let~ 205 (289)
+-++.
T Consensus 102 gt~~~ 106 (229)
T PF00977_consen 102 GTEAL 106 (229)
T ss_dssp SHHHH
T ss_pred ChHHh
Confidence 87654
No 258
>PRK13586 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=89.71 E-value=4.1 Score=34.39 Aligned_cols=75 Identities=19% Similarity=0.071 Sum_probs=51.6
Q ss_pred HHHHHHHHHHHcCCcEEEEecccCCCCCCchhHHHHHHHHHHHHh-cCceEEEeCCCCCHHHHHHHHHcCCCeEecCCCc
Q 022946 126 AVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRD-MGMEVCCTLGMLEKHQAIELKKAGLTAYNHNLDT 204 (289)
Q Consensus 126 ei~~~~~~~~~~g~~~i~i~~~~~~~~ge~~~~~~l~e~i~~ik~-~~~~i~~~~g~l~~e~l~~L~~aG~~~v~i~let 204 (289)
+.++.++.+.+.|++++++..-+... +.+.+. ++++++.+ ...++..-.|.-+.+.++.+.++|++++.+|-++
T Consensus 31 dP~~~a~~~~~~ga~~lhivDLd~a~-~~~~n~----~~i~~i~~~~~~~v~vGGGIrs~e~~~~~l~~Ga~kvvigt~a 105 (232)
T PRK13586 31 NPIEIASKLYNEGYTRIHVVDLDAAE-GVGNNE----MYIKEISKIGFDWIQVGGGIRDIEKAKRLLSLDVNALVFSTIV 105 (232)
T ss_pred CHHHHHHHHHHCCCCEEEEEECCCcC-CCcchH----HHHHHHHhhCCCCEEEeCCcCCHHHHHHHHHCCCCEEEECchh
Confidence 34555666778999999997643222 333333 55555543 3336777788889999999999999999988766
Q ss_pred h
Q 022946 205 S 205 (289)
Q Consensus 205 ~ 205 (289)
.
T Consensus 106 ~ 106 (232)
T PRK13586 106 F 106 (232)
T ss_pred h
Confidence 4
No 259
>PRK07807 inosine 5-monophosphate dehydrogenase; Validated
Probab=89.57 E-value=5.2 Score=37.68 Aligned_cols=120 Identities=18% Similarity=0.225 Sum_probs=74.5
Q ss_pred HHHHHHHHHHHHcCCcEEEEecccCCCCCCchhHHHHHHHHHHHHhcC--ceEEEeCCCCCHHHHHHHHHcCCCeEecCC
Q 022946 125 DAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMG--MEVCCTLGMLEKHQAIELKKAGLTAYNHNL 202 (289)
Q Consensus 125 eei~~~~~~~~~~g~~~i~i~~~~~~~~ge~~~~~~l~e~i~~ik~~~--~~i~~~~g~l~~e~l~~L~~aG~~~v~i~l 202 (289)
+++.+.++.+.+.|++.+++-... | +-..+.++++.+|+.. +.+..- ...+.+..+.|.++|+|.|.+|+
T Consensus 226 ~~~~~~a~~Lv~aGvd~i~~D~a~----~---~~~~~~~~i~~ik~~~p~~~v~ag-nv~t~~~a~~l~~aGad~v~vgi 297 (479)
T PRK07807 226 GDVAAKARALLEAGVDVLVVDTAH----G---HQEKMLEALRAVRALDPGVPIVAG-NVVTAEGTRDLVEAGADIVKVGV 297 (479)
T ss_pred hhHHHHHHHHHHhCCCEEEEeccC----C---ccHHHHHHHHHHHHHCCCCeEEee-ccCCHHHHHHHHHcCCCEEEECc
Confidence 456677788888999988774321 2 2467889999998653 444331 24679999999999999999887
Q ss_pred Cch-HHHHhccCC--CCCHHHHHHHHHHHHHcCCceeecEEeecCCCHHHHHHHHH
Q 022946 203 DTS-REFYSKIIT--TRSYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLH 255 (289)
Q Consensus 203 et~-~~~~~~i~~--~~~~~~~~~~i~~~~~~Gi~v~~~~i~Glget~ed~~~~l~ 255 (289)
-+. ==+.+.+.. ...+..+.+..+.+++.|+++.+. |=-.+..|+...+.
T Consensus 298 g~gsictt~~~~~~~~p~~~av~~~~~~~~~~~~~via~---ggi~~~~~~~~al~ 350 (479)
T PRK07807 298 GPGAMCTTRMMTGVGRPQFSAVLECAAAARELGAHVWAD---GGVRHPRDVALALA 350 (479)
T ss_pred cCCcccccccccCCchhHHHHHHHHHHHHHhcCCcEEec---CCCCCHHHHHHHHH
Confidence 662 111111111 124556666666666777664321 22345666665554
No 260
>PF05853 DUF849: Prokaryotic protein of unknown function (DUF849); InterPro: IPR008567 This family consists of several hypothetical prokaryotic proteins with no known function.; PDB: 3C6C_A 2Y7G_B 2Y7F_B 2Y7D_D 2Y7E_B 3LOT_A 3FA5_B 3NO5_C 3E02_A 3E49_B ....
Probab=89.47 E-value=4.7 Score=34.94 Aligned_cols=112 Identities=20% Similarity=0.147 Sum_probs=58.3
Q ss_pred CCHHHHHHHHHHHHHcCCcEEEEecccCCCCCCc-hhHHHHHHHHHHHHhc--CceEEEeCCC---CC-HHHHHHHHHcC
Q 022946 122 MTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRK-TNFNQILEYVKDIRDM--GMEVCCTLGM---LE-KHQAIELKKAG 194 (289)
Q Consensus 122 ~~~eei~~~~~~~~~~g~~~i~i~~~~~~~~ge~-~~~~~l~e~i~~ik~~--~~~i~~~~g~---l~-~e~l~~L~~aG 194 (289)
.++|||.+.+.++.+.|..-+++-.-+ +..|.+ ...+.+.+.++.+++. ++-+..|.|. .+ ++.+..+....
T Consensus 23 ~tpeEia~~A~~c~~AGAa~vH~H~R~-~~~G~~s~d~~~~~e~~~~IR~~~pd~iv~~Ttg~~~~~~~~~R~~~v~~~~ 101 (272)
T PF05853_consen 23 ITPEEIAADAVACYEAGAAIVHIHARD-DEDGRPSLDPELYAEVVEAIRAACPDLIVQPTTGGGGGPDPEERLAHVEAWK 101 (272)
T ss_dssp -SHHHHHHHHHHHHHHTESEEEE-EE--TTTS-EE--HHHHHHHHHHHHHHSTTSEEEEESSTTTTSGHHHHCTHHHHH-
T ss_pred CCHHHHHHHHHHHHHcCCcEEEeecCC-CCCCCcCCCHHHHHHHHHHHHHHCCCeEEEeCCCCCCCCCHHHHHHHHHhcC
Confidence 789999999999999999988885421 223444 5668888888888844 5666555332 33 33444444434
Q ss_pred CCeEecCCCch-HHHHhccCCCCCHHHHHHHHHHHHHcCCce
Q 022946 195 LTAYNHNLDTS-REFYSKIITTRSYDERLETLKHVREAGINV 235 (289)
Q Consensus 195 ~~~v~i~let~-~~~~~~i~~~~~~~~~~~~i~~~~~~Gi~v 235 (289)
.+..++++-+. -. .....-.++.+.+.+.++.+++.|+++
T Consensus 102 pd~asl~~gs~n~~-~~~~~~~n~~~~~~~~~~~~~e~Gi~p 142 (272)
T PF05853_consen 102 PDMASLNPGSMNFG-TRDRVYINTPADARELARRMRERGIKP 142 (272)
T ss_dssp -SEEEEE-S-EEES-GGCSEE---HHHHHHHHHHHHHTT-EE
T ss_pred CCeEEecccccccc-cCCceecCCHHHHHHHHHHHHHcCCeE
Confidence 56666554432 11 000001134455555555555555544
No 261
>PRK05096 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=89.35 E-value=6.6 Score=34.95 Aligned_cols=100 Identities=12% Similarity=0.153 Sum_probs=62.8
Q ss_pred HHHHHHH--cCCcEEEEecccCCCCCCchhHHHHHHHHHHHHhcC--ceEEEeCCCCCHHHHHHHHHcCCCeEecCCCch
Q 022946 130 AAQKAKE--AGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMG--MEVCCTLGMLEKHQAIELKKAGLTAYNHNLDTS 205 (289)
Q Consensus 130 ~~~~~~~--~g~~~i~i~~~~~~~~ge~~~~~~l~e~i~~ik~~~--~~i~~~~g~l~~e~l~~L~~aG~~~v~i~let~ 205 (289)
.++.+.+ .|++.+++-... | +-+.++++++.+|+.. ..+..- ...+.+..+.|.++|+|.+-+|+-..
T Consensus 112 r~~~L~~~~~g~D~iviD~Ah----G---hs~~~i~~ik~ik~~~P~~~vIaG-NV~T~e~a~~Li~aGAD~vKVGIGpG 183 (346)
T PRK05096 112 KTKQILALSPALNFICIDVAN----G---YSEHFVQFVAKAREAWPDKTICAG-NVVTGEMVEELILSGADIVKVGIGPG 183 (346)
T ss_pred HHHHHHhcCCCCCEEEEECCC----C---cHHHHHHHHHHHHHhCCCCcEEEe-cccCHHHHHHHHHcCCCEEEEcccCC
Confidence 3334444 488888874321 2 5578999999999653 333322 24789999999999999998877543
Q ss_pred -HHHHhccCC-C-CCHHHHHHHHHHHHHcCCceee
Q 022946 206 -REFYSKIIT-T-RSYDERLETLKHVREAGINVCS 237 (289)
Q Consensus 206 -~~~~~~i~~-~-~~~~~~~~~i~~~~~~Gi~v~~ 237 (289)
-=+-+.... + .....+.+.-+.+++.|.++.+
T Consensus 184 SiCtTr~vtGvG~PQltAV~~~a~~a~~~gvpiIA 218 (346)
T PRK05096 184 SVCTTRVKTGVGYPQLSAVIECADAAHGLGGQIVS 218 (346)
T ss_pred ccccCccccccChhHHHHHHHHHHHHHHcCCCEEe
Confidence 111111111 1 1356677777778888876543
No 262
>PF04481 DUF561: Protein of unknown function (DUF561); InterPro: IPR007570 Protein in this entry are of unknown function and are found in cyanobacteria and the chloroplasts of algae. As the family is exclusively found in phototrophic organisms it may play a role in photosynthesis.
Probab=89.28 E-value=12 Score=31.20 Aligned_cols=126 Identities=17% Similarity=0.212 Sum_probs=84.8
Q ss_pred CCHHHHHHHHHHHHHcCCcEEEEecccCCCCCCchhHHHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHcCCCeEec-
Q 022946 122 MTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMGMEVCCTLGMLEKHQAIELKKAGLTAYNH- 200 (289)
Q Consensus 122 ~~~eei~~~~~~~~~~g~~~i~i~~~~~~~~ge~~~~~~l~e~i~~ik~~~~~i~~~~g~l~~e~l~~L~~aG~~~v~i- 200 (289)
.+.+.|.+.++.+..-|.+.+-+-. . .++++.++.+ .++++|++. ++++.+-.-.++|.|-+.+
T Consensus 24 Fd~~~V~~i~~AA~~ggAt~vDIAa-------d----p~LV~~~~~~--s~lPICVSa--Vep~~f~~aV~AGAdliEIG 88 (242)
T PF04481_consen 24 FDAESVAAIVKAAEIGGATFVDIAA-------D----PELVKLAKSL--SNLPICVSA--VEPELFVAAVKAGADLIEIG 88 (242)
T ss_pred cCHHHHHHHHHHHHccCCceEEecC-------C----HHHHHHHHHh--CCCCeEeec--CCHHHHHHHHHhCCCEEEec
Confidence 4678888888888778888775543 1 3555555433 477888765 6788888899999999997
Q ss_pred CCCchHHHHhccCCCCCHHHHHHHHHHHHHcCCceeecEEeecCCCHHHHHHHHHHHhcCCCCCCeee
Q 022946 201 NLDTSREFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVP 268 (289)
Q Consensus 201 ~let~~~~~~~i~~~~~~~~~~~~i~~~~~~Gi~v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~ 268 (289)
+.|++ |.+ .+..+.+++++.-+..|+.=..+...+.+=+.-..++-..+...|.++ +.|.++
T Consensus 89 NfDsF---Y~q-Gr~f~a~eVL~Lt~~tR~LLP~~~LsVTVPHiL~ld~Qv~LA~~L~~~--GaDiIQ 150 (242)
T PF04481_consen 89 NFDSF---YAQ-GRRFSAEEVLALTRETRSLLPDITLSVTVPHILPLDQQVQLAEDLVKA--GADIIQ 150 (242)
T ss_pred chHHH---Hhc-CCeecHHHHHHHHHHHHHhCCCCceEEecCccccHHHHHHHHHHHHHh--CCcEEE
Confidence 46654 332 123478999999999988654444444443333455666777777777 456554
No 263
>COG0269 SgbH 3-hexulose-6-phosphate synthase and related proteins [Carbohydrate transport and metabolism]
Probab=89.02 E-value=12 Score=31.06 Aligned_cols=104 Identities=26% Similarity=0.331 Sum_probs=67.5
Q ss_pred HHHHHHcCCcEEEEecccCCCCCCchhHHHHHHHHHHHHhcCceEEEe-CCCC-CHHHHHHHHHcCCCeEec--CCCchH
Q 022946 131 AQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMGMEVCCT-LGML-EKHQAIELKKAGLTAYNH--NLDTSR 206 (289)
Q Consensus 131 ~~~~~~~g~~~i~i~~~~~~~~ge~~~~~~l~e~i~~ik~~~~~i~~~-~g~l-~~e~l~~L~~aG~~~v~i--~let~~ 206 (289)
++.+.+.|.+-+++.|.. ...-+...++..++.+.++... .+.- ..+..++|+++|++.+.+ |.|.
T Consensus 73 ~~ma~~aGAd~~tV~g~A--------~~~TI~~~i~~A~~~~~~v~iDl~~~~~~~~~~~~l~~~gvd~~~~H~g~D~-- 142 (217)
T COG0269 73 ARMAFEAGADWVTVLGAA--------DDATIKKAIKVAKEYGKEVQIDLIGVWDPEQRAKWLKELGVDQVILHRGRDA-- 142 (217)
T ss_pred HHHHHHcCCCEEEEEecC--------CHHHHHHHHHHHHHcCCeEEEEeecCCCHHHHHHHHHHhCCCEEEEEecccH--
Confidence 335568899999887632 4467778888888888776554 2333 355678888899998765 4433
Q ss_pred HHHhccCCCCCH-HHHHHHHHHHHHcCCceeecEEeecCCCHHHHHHH
Q 022946 207 EFYSKIITTRSY-DERLETLKHVREAGINVCSGGIIGLGEAEEDRVGL 253 (289)
Q Consensus 207 ~~~~~i~~~~~~-~~~~~~i~~~~~~Gi~v~~~~i~Glget~ed~~~~ 253 (289)
+. .+.++ .+.++.++.+.+.|+.+. +-| |-+++++...
T Consensus 143 q~-----~G~~~~~~~l~~ik~~~~~g~~vA---VaG-GI~~~~i~~~ 181 (217)
T COG0269 143 QA-----AGKSWGEDDLEKIKKLSDLGAKVA---VAG-GITPEDIPLF 181 (217)
T ss_pred hh-----cCCCccHHHHHHHHHhhccCceEE---Eec-CCCHHHHHHH
Confidence 11 23455 677888888888887654 222 5556654433
No 264
>PLN02540 methylenetetrahydrofolate reductase
Probab=88.96 E-value=18 Score=34.68 Aligned_cols=49 Identities=20% Similarity=0.172 Sum_probs=35.0
Q ss_pred CCHHHHHHHHHHHHHcCCcEEEEecccCCCCCC-----chhHHHHHHHHHHHHh
Q 022946 122 MTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGR-----KTNFNQILEYVKDIRD 170 (289)
Q Consensus 122 ~~~eei~~~~~~~~~~g~~~i~i~~~~~~~~ge-----~~~~~~l~e~i~~ik~ 170 (289)
++.+++.+.+..+.+.|++.|....|+....++ +..+.+..++|+.+++
T Consensus 70 ~n~~~L~~~L~~a~~~GIrNILALrGDpp~~~d~~~~~~g~F~~A~dLV~~Ir~ 123 (565)
T PLN02540 70 MPVEKIDHALETIKSNGIQNILALRGDPPHGQDKFVQVEGGFACALDLVKHIRS 123 (565)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCcCCCCCCcccHHHHHHHHHH
Confidence 567889999999999999999665555443332 1345668888888874
No 265
>PF00809 Pterin_bind: Pterin binding enzyme This Prosite entry is a subset of the Pfam family; InterPro: IPR000489 The ~250-residue pterin-binding domain has been shown to adopt a (beta/alpha)8 barrel fold, which has the overall shape of a distorted cylinder. It has eight alpha-helices stacked around the outside of an inner cylinder of parallel beta-strands. The pterin ring binds at the bottom of the (beta/alpha;)8 barrel in a polar cup-like region that is relatively solvent exposed and fairly negatively charged. The pterin ring is partially buried within the (beta/alpha)8 barrel. The pterin binding residues are highly conserved and include aspartate and asparagine residues located at the C terminus of the beta-strands of the barrel, which are predicted to form hydrogen bonds with the nitrogen and oxygen atoms of the pterin ring [, , ]. Some proteins known to contain a pterin-binding domain are listed below: Prokaryotic and eukaryotic B12-dependent methionine synthase (MetH) (2.1.1.13 from EC), a large, modular protein that catalyzes the transfer of a methyl group from methyltetrahydrofolate (CH3-H4folate) to Hcy to form methionine, using cobalamin as an intermediate methyl carrier. Prokaryotic and eukaryotic dihydropteroate synthase (DHPS) (2.5.1.15 from EC). It catalyzes the condensation of para-aminobenzoic acid (pABA) with 7,8- dihydropterin-pyrophosphate (DHPPP), eliminating pyrophosphate to form 7,8- dihydropteroate which is subsequently converted to tetrahydrofolate. Moorella thermoacetica 5-methyltetrahydrofolate corrinoid/iron sulphur protein methyltransferase (MeTr). It transfers the N5-methyl group from CH3-H4folate to a cob(I)amide centre in another protein, the corrinoid iron sulphur protein. ; GO: 0042558 pteridine-containing compound metabolic process; PDB: 2VP8_B 2BMB_A 2Y5S_B 2Y5J_A 3BOF_B 1Q7Q_B 1Q85_B 1Q7Z_A 1Q7M_A 1Q8A_B ....
Probab=88.76 E-value=6 Score=32.81 Aligned_cols=137 Identities=19% Similarity=0.290 Sum_probs=73.4
Q ss_pred CCHHHHHHHHHHHHHcCCcEEEEecccCCCCC----CchhHHHHHHHHHHHHh--cCceEEEeCCCCCHHHHHHHHHcCC
Q 022946 122 MTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIG----RKTNFNQILEYVKDIRD--MGMEVCCTLGMLEKHQAIELKKAGL 195 (289)
Q Consensus 122 ~~~eei~~~~~~~~~~g~~~i~i~~~~~~~~g----e~~~~~~l~e~i~~ik~--~~~~i~~~~g~l~~e~l~~L~~aG~ 195 (289)
.+.++.++.++...+.|.+-+-++++...+.. +...++++.++++.+.+ .++.+.. .+.+.+++++-.++|.
T Consensus 16 ~~~~~a~~~a~~~~~~GAdiIDIg~~st~p~~~~v~~~eE~~rl~~~l~~i~~~~~~~plSI--DT~~~~v~~~aL~~g~ 93 (210)
T PF00809_consen 16 FSEDEAVKRAREQVEAGADIIDIGAESTRPGATPVSEEEEMERLVPVLQAIREENPDVPLSI--DTFNPEVAEAALKAGA 93 (210)
T ss_dssp HHHHHHHHHHHHHHHTT-SEEEEESSTSSTTSSSSHHHHHHHHHHHHHHHHHHHHTTSEEEE--EESSHHHHHHHHHHTS
T ss_pred cCHHHHHHHHHHHHHhcCCEEEecccccCCCCCcCCHHHHHHHHHHHHHHHhccCCCeEEEE--ECCCHHHHHHHHHcCc
Confidence 46788888899999999999888765533332 23566788888888874 3444322 2233444444434455
Q ss_pred CeEe--cCCCchHHHHhc---c---------C--C---CCC-----------HHHHHHHHHHHHHcCC---ceeecEEee
Q 022946 196 TAYN--HNLDTSREFYSK---I---------I--T---TRS-----------YDERLETLKHVREAGI---NVCSGGIIG 242 (289)
Q Consensus 196 ~~v~--i~let~~~~~~~---i---------~--~---~~~-----------~~~~~~~i~~~~~~Gi---~v~~~~i~G 242 (289)
+.++ .+++..+++++. . . + ..+ .+...+.++.+.++|+ ++..+-.+|
T Consensus 94 ~~ind~~~~~~~~~~~~l~a~~~~~vV~m~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~i~~l~~~Gi~~~~Ii~DPgig 173 (210)
T PF00809_consen 94 DIINDISGFEDDPEMLPLAAEYGAPVVLMHSDGNPKGMPETADYRLDIAEEIIEFLEERIEALEKAGIPRERIILDPGIG 173 (210)
T ss_dssp SEEEETTTTSSSTTHHHHHHHHTSEEEEESESSETTTTTSSHHHSHSHHHHHHHHHHHHHHHHHHTT--GGGEEEETTTT
T ss_pred ceEEecccccccchhhhhhhcCCCEEEEEecccccccccccchhhhhHHHHHHHHHHHHHHHHHHcCCCHHHEeeccccC
Confidence 4443 122211111110 0 0 0 001 1223334444566899 477777778
Q ss_pred cCCCHHHHHHHHHHHhcC
Q 022946 243 LGEAEEDRVGLLHTLATL 260 (289)
Q Consensus 243 lget~ed~~~~l~~l~~l 260 (289)
++-+.++-.++++.+..+
T Consensus 174 f~~~~~~~~~~l~~i~~~ 191 (210)
T PF00809_consen 174 FGKDPEQNLELLRNIEEL 191 (210)
T ss_dssp SSTTHHHHHHHHHTHHHH
T ss_pred cCCCHHHHHHHHHHHHHH
Confidence 876666666666665554
No 266
>PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=88.75 E-value=4.2 Score=34.72 Aligned_cols=73 Identities=18% Similarity=0.251 Sum_probs=51.2
Q ss_pred HHHHHHHHHcCCcEEEEecccCCCCCCchhHHHHHHHHHHHH-hcCceEEEeCCCCCHHHHHHHHHcCCCeEecCCCc
Q 022946 128 MQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIR-DMGMEVCCTLGMLEKHQAIELKKAGLTAYNHNLDT 204 (289)
Q Consensus 128 ~~~~~~~~~~g~~~i~i~~~~~~~~ge~~~~~~l~e~i~~ik-~~~~~i~~~~g~l~~e~l~~L~~aG~~~v~i~let 204 (289)
.+.++.+.+.|++++++.+-+....+. ..-+++++.++ ..++++....|.-+.+.++++.+.|++.+.++-..
T Consensus 33 ~~~a~~~~~~G~~~i~i~dl~~~~~~~----~~~~~~i~~i~~~~~ipv~~~GGi~s~~~~~~~l~~Ga~~Viigt~~ 106 (253)
T PRK02083 33 VELAKRYNEEGADELVFLDITASSEGR----DTMLDVVERVAEQVFIPLTVGGGIRSVEDARRLLRAGADKVSINSAA 106 (253)
T ss_pred HHHHHHHHHcCCCEEEEEeCCcccccC----cchHHHHHHHHHhCCCCEEeeCCCCCHHHHHHHHHcCCCEEEEChhH
Confidence 444455568899999997643321122 33455555555 34788888899999999999999999999887543
No 267
>cd00958 DhnA Class I fructose-1,6-bisphosphate (FBP) aldolases of the archaeal type (DhnA homologs) found in bacteria and archaea. Catalysis of the enzymes proceeds via a Schiff-base mechanism like other class I aldolases, although this subfamily is clearly divergent based on sequence similarity to other class I and class II (metal dependent) aldolase subfamilies.
Probab=88.68 E-value=12 Score=31.31 Aligned_cols=79 Identities=5% Similarity=0.061 Sum_probs=42.8
Q ss_pred CHHHHHHHHHHHHHcCCcEEEEecccCCCCCCchhHHHHHHHHHHHHhcCceEEEeCCC--------CCHHHHHH----H
Q 022946 123 TKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMGMEVCCTLGM--------LEKHQAIE----L 190 (289)
Q Consensus 123 ~~eei~~~~~~~~~~g~~~i~i~~~~~~~~ge~~~~~~l~e~i~~ik~~~~~i~~~~g~--------l~~e~l~~----L 190 (289)
+.+.....++++.+.|++.+.++-..... .+....+.+.++.+..++.++.+...... ++.+.+.. .
T Consensus 74 ~~~~~~~~v~~a~~~Ga~~v~~~~~~~~~-~~~~~~~~i~~v~~~~~~~g~~~iie~~~~g~~~~~~~~~~~i~~~~~~a 152 (235)
T cd00958 74 NDKVLVASVEDAVRLGADAVGVTVYVGSE-EEREMLEELARVAAEAHKYGLPLIAWMYPRGPAVKNEKDPDLIAYAARIG 152 (235)
T ss_pred CchhhhcCHHHHHHCCCCEEEEEEecCCc-hHHHHHHHHHHHHHHHHHcCCCEEEEEeccCCcccCccCHHHHHHHHHHH
Confidence 44555666777888999988554311110 11122233333333334567776543322 34455444 6
Q ss_pred HHcCCCeEecCC
Q 022946 191 KKAGLTAYNHNL 202 (289)
Q Consensus 191 ~~aG~~~v~i~l 202 (289)
.++|.|.|.++.
T Consensus 153 ~~~GaD~Ik~~~ 164 (235)
T cd00958 153 AELGADIVKTKY 164 (235)
T ss_pred HHHCCCEEEecC
Confidence 667999998864
No 268
>KOG3111 consensus D-ribulose-5-phosphate 3-epimerase [Carbohydrate transport and metabolism]
Probab=88.52 E-value=4.5 Score=32.85 Aligned_cols=81 Identities=11% Similarity=0.094 Sum_probs=48.3
Q ss_pred CHHHHHHHHHHHHHcCCcEEEE-ecccCCCCCCchhHHHHHHHHHHHHhc--CceEEEeCCCCCHHHHHHHHHcCCCeEe
Q 022946 123 TKDAVMQAAQKAKEAGSTRFCM-GAAWRDTIGRKTNFNQILEYVKDIRDM--GMEVCCTLGMLEKHQAIELKKAGLTAYN 199 (289)
Q Consensus 123 ~~eei~~~~~~~~~~g~~~i~i-~~~~~~~~ge~~~~~~l~e~i~~ik~~--~~~i~~~~g~l~~e~l~~L~~aG~~~v~ 199 (289)
+...+.+++.++.+.|++.+++ +.++.+ ...-+.-.-+++.++.-... .++++.-. .-++++++.|.++|.+.+.
T Consensus 15 dfanL~~e~~~~l~~GadwlHlDVMDg~F-VpNiT~G~pvV~slR~~~~~~~ffD~HmMV-~~Peq~V~~~a~agas~~t 92 (224)
T KOG3111|consen 15 DFANLAAECKKMLDAGADWLHLDVMDGHF-VPNITFGPPVVESLRKHTGADPFFDVHMMV-ENPEQWVDQMAKAGASLFT 92 (224)
T ss_pred chHHHHHHHHHHHHcCCCeEEEeeecccc-cCCcccchHHHHHHHhccCCCcceeEEEee-cCHHHHHHHHHhcCcceEE
Confidence 4466778888888999999887 222221 11112224455555442211 22332111 1346678999999999999
Q ss_pred cCCCch
Q 022946 200 HNLDTS 205 (289)
Q Consensus 200 i~let~ 205 (289)
+..|..
T Consensus 93 fH~E~~ 98 (224)
T KOG3111|consen 93 FHYEAT 98 (224)
T ss_pred EEEeec
Confidence 988774
No 269
>TIGR03849 arch_ComA phosphosulfolactate synthase. This model finds the ComA (Coenzyme M biosynthesis A) protein, phosphosulfolactate synthase, in methanogenic archaea. The ComABC pathway is one of at least two pathways to the intermediate sulfopyruvate. Coenzyme M occurs rarely and sporadically outside of the archaea, as for expoxide metabolism in Xanthobacter autotrophicus Py2, but candidate phosphosulfolactate synthases from that and other species occur fall below the cutoff and outside the scope of this model. This model deliberately is narrower in scope than pfam02679.
Probab=88.49 E-value=14 Score=31.21 Aligned_cols=40 Identities=20% Similarity=0.265 Sum_probs=18.6
Q ss_pred HHHHHHcCCCeEecCCCchHHHHhccCCCCCHHHHHHHHHHHHHcCCce
Q 022946 187 AIELKKAGLTAYNHNLDTSREFYSKIITTRSYDERLETLKHVREAGINV 235 (289)
Q Consensus 187 l~~L~~aG~~~v~i~let~~~~~~~i~~~~~~~~~~~~i~~~~~~Gi~v 235 (289)
++..++.|++.|.+|--+. .-+.+++.+.|+.+++.|+.+
T Consensus 77 l~~~k~lGf~~IEiS~G~~---------~i~~~~~~rlI~~~~~~g~~v 116 (237)
T TIGR03849 77 LNECDELGFEAVEISDGSM---------EISLEERCNLIERAKDNGFMV 116 (237)
T ss_pred HHHHHHcCCCEEEEcCCcc---------CCCHHHHHHHHHHHHhCCCeE
Confidence 3455555555555543221 123444555555555555443
No 270
>PLN02617 imidazole glycerol phosphate synthase hisHF
Probab=88.42 E-value=12 Score=35.74 Aligned_cols=82 Identities=11% Similarity=-0.004 Sum_probs=56.6
Q ss_pred CHHHHHHHHHHHHHcCCcEEEEecccCCCCCCchhHHHHHHHHHHHH-hcCceEEEeCCCCCH-----------HHHHHH
Q 022946 123 TKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIR-DMGMEVCCTLGMLEK-----------HQAIEL 190 (289)
Q Consensus 123 ~~eei~~~~~~~~~~g~~~i~i~~~~~~~~ge~~~~~~l~e~i~~ik-~~~~~i~~~~g~l~~-----------e~l~~L 190 (289)
.....++.++...+.|+++++|..-+....+ +...+..+++++++. ...+++.+-.|.-+. |.++++
T Consensus 265 ~~gdPve~a~~y~~~Gadel~~~Di~~~~~~-~~~~~~~~~~i~~i~~~~~ip~~vGGGIr~~~d~~~~~~~~~e~~~~~ 343 (538)
T PLN02617 265 NLGKPVELAGQYYKDGADEVAFLNITGFRDF-PLGDLPMLEVLRRASENVFVPLTVGGGIRDFTDANGRYYSSLEVASEY 343 (538)
T ss_pred cCCCHHHHHHHHHHcCCCEEEEEECCCCcCC-cccchhHHHHHHHHHhhCCCCEEEcCCccccccccccccchHHHHHHH
Confidence 4455567777888999999998753211111 223355677777766 457777776676553 779999
Q ss_pred HHcCCCeEecCCCch
Q 022946 191 KKAGLTAYNHNLDTS 205 (289)
Q Consensus 191 ~~aG~~~v~i~let~ 205 (289)
.++|++.|.++-.+.
T Consensus 344 l~~GadkV~i~s~Av 358 (538)
T PLN02617 344 FRSGADKISIGSDAV 358 (538)
T ss_pred HHcCCCEEEEChHHH
Confidence 999999999986554
No 271
>COG0800 Eda 2-keto-3-deoxy-6-phosphogluconate aldolase [Carbohydrate transport and metabolism]
Probab=88.41 E-value=5.1 Score=33.11 Aligned_cols=68 Identities=18% Similarity=0.100 Sum_probs=49.6
Q ss_pred CCHHHHHHHHHHHHHcCCcEEEEecccCCCCCCchhHHHHHHHHHHHHhcCceEEEeCCC-CCHHHHHHHHHcCCCeEe
Q 022946 122 MTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMGMEVCCTLGM-LEKHQAIELKKAGLTAYN 199 (289)
Q Consensus 122 ~~~eei~~~~~~~~~~g~~~i~i~~~~~~~~ge~~~~~~l~e~i~~ik~~~~~i~~~~g~-l~~e~l~~L~~aG~~~v~ 199 (289)
.++|+.+..++.+.+.|++-+.+.- .. +.-.+.|+.+++...++.+-.|+ ++.+.+++..++|.+.+-
T Consensus 22 ~~~e~a~~~a~Ali~gGi~~IEITl------~s----p~a~e~I~~l~~~~p~~lIGAGTVL~~~q~~~a~~aGa~fiV 90 (211)
T COG0800 22 DDVEEALPLAKALIEGGIPAIEITL------RT----PAALEAIRALAKEFPEALIGAGTVLNPEQARQAIAAGAQFIV 90 (211)
T ss_pred CCHHHHHHHHHHHHHcCCCeEEEec------CC----CCHHHHHHHHHHhCcccEEccccccCHHHHHHHHHcCCCEEE
Confidence 5889999999999999999887753 11 23445555555332266666665 899999999999997543
No 272
>PRK04128 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=88.40 E-value=4.7 Score=33.94 Aligned_cols=82 Identities=12% Similarity=0.111 Sum_probs=51.7
Q ss_pred CHHHHHHHHHHHHHcCCcEEEEecccCCCCCCchhHHHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHcCCCeEecCC
Q 022946 123 TKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMGMEVCCTLGMLEKHQAIELKKAGLTAYNHNL 202 (289)
Q Consensus 123 ~~eei~~~~~~~~~~g~~~i~i~~~~~~~~ge~~~~~~l~e~i~~ik~~~~~i~~~~g~l~~e~l~~L~~aG~~~v~i~l 202 (289)
++.++.+. +.+. ++++++..-+....|.+.+++-+.++.+ ..++++....|.-+.+.++.|.++|++.+.+|-
T Consensus 31 dp~~~a~~---~~~~-~~~l~ivDldga~~g~~~n~~~i~~i~~---~~~~pv~~gGGIrs~edv~~l~~~G~~~vivGt 103 (228)
T PRK04128 31 DPVEIALR---FSEY-VDKIHVVDLDGAFEGKPKNLDVVKNIIR---ETGLKVQVGGGLRTYESIKDAYEIGVENVIIGT 103 (228)
T ss_pred CHHHHHHH---HHHh-CCEEEEEECcchhcCCcchHHHHHHHHh---hCCCCEEEcCCCCCHHHHHHHHHCCCCEEEECc
Confidence 55554444 4455 7888775432222243334433333332 357788888999999999999999999998886
Q ss_pred Cch-HHHHhc
Q 022946 203 DTS-REFYSK 211 (289)
Q Consensus 203 et~-~~~~~~ 211 (289)
.+. ++..+.
T Consensus 104 aa~~~~~l~~ 113 (228)
T PRK04128 104 KAFDLEFLEK 113 (228)
T ss_pred hhcCHHHHHH
Confidence 555 444443
No 273
>COG5016 Pyruvate/oxaloacetate carboxyltransferase [Energy production and conversion]
Probab=88.31 E-value=13 Score=33.80 Aligned_cols=76 Identities=22% Similarity=0.231 Sum_probs=51.1
Q ss_pred CcCCCCHHHHHHHHHHHHHcCCcEEEEecccCCCCCCchhHHHHHHHHHHHHhcCceE----EEeCC-----CCCHHHHH
Q 022946 118 GQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMGMEV----CCTLG-----MLEKHQAI 188 (289)
Q Consensus 118 ~~~~~~~eei~~~~~~~~~~g~~~i~i~~~~~~~~ge~~~~~~l~e~i~~ik~~~~~i----~~~~g-----~l~~e~l~ 188 (289)
.|+..+.|-|.+-++...++|++-|.+..+- + ....+...++.+|+.|.++ +-+.. ....+.++
T Consensus 91 GYrhyaDDvVe~Fv~ka~~nGidvfRiFDAl----N---D~RNl~~ai~a~kk~G~h~q~~i~YT~sPvHt~e~yv~~ak 163 (472)
T COG5016 91 GYRHYADDVVEKFVEKAAENGIDVFRIFDAL----N---DVRNLKTAIKAAKKHGAHVQGTISYTTSPVHTLEYYVELAK 163 (472)
T ss_pred cccCCchHHHHHHHHHHHhcCCcEEEechhc----c---chhHHHHHHHHHHhcCceeEEEEEeccCCcccHHHHHHHHH
Confidence 3454567777777888899999988776532 2 3356677777777666553 21111 13456678
Q ss_pred HHHHcCCCeEec
Q 022946 189 ELKKAGLTAYNH 200 (289)
Q Consensus 189 ~L~~aG~~~v~i 200 (289)
+|.+.|+|+|.+
T Consensus 164 el~~~g~DSIci 175 (472)
T COG5016 164 ELLEMGVDSICI 175 (472)
T ss_pred HHHHcCCCEEEe
Confidence 999999999986
No 274
>cd06543 GH18_PF-ChiA-like PF-ChiA is an uncharacterized chitinase found in the hyperthermophilic archaeon Pyrococcus furiosus with a glycosyl hydrolase family 18 (GH18) catalytic domain as well as a cellulose-binding domain. Members of this domain family are found not only in archaea but also in eukaryotes and prokaryotes. PF-ChiA exhibits hydrolytic activity toward both colloidal and crystalline (beta/alpha) chitins at high temperature.
Probab=88.26 E-value=13 Score=32.68 Aligned_cols=109 Identities=17% Similarity=0.219 Sum_probs=65.8
Q ss_pred HHHHHHHHHHHhcCceEEEeCCC-----C-----C-----HHHHHHHHHcCCCeEecCCCchHHHHhccCCCCCHHHHHH
Q 022946 159 NQILEYVKDIRDMGMEVCCTLGM-----L-----E-----KHQAIELKKAGLTAYNHNLDTSREFYSKIITTRSYDERLE 223 (289)
Q Consensus 159 ~~l~e~i~~ik~~~~~i~~~~g~-----l-----~-----~e~l~~L~~aG~~~v~i~let~~~~~~~i~~~~~~~~~~~ 223 (289)
..+...|+.++..|.++.++.|- + + ....+.+...|++.|-+.+|... .......+.+.+
T Consensus 54 ~~~~~~i~~lk~~G~kViiS~GG~~g~~~~~~~~~~~~~~~a~~~~i~~y~~dgiDfDiE~~~-----~~d~~~~~~~~~ 128 (294)
T cd06543 54 GWIKSDIAALRAAGGDVIVSFGGASGTPLATSCTSADQLAAAYQKVIDAYGLTHLDFDIEGGA-----LTDTAAIDRRAQ 128 (294)
T ss_pred hhHHHHHHHHHHcCCeEEEEecCCCCCccccCcccHHHHHHHHHHHHHHhCCCeEEEeccCCc-----cccchhHHHHHH
Confidence 45667777888778777666321 1 1 12345566679999999998862 111234678888
Q ss_pred HHHHHHHc--CCceeecEEeec-CCCHHHHHHHHHHHhcCCCCCCeeeeccce
Q 022946 224 TLKHVREA--GINVCSGGIIGL-GEAEEDRVGLLHTLATLPTHPESVPINALL 273 (289)
Q Consensus 224 ~i~~~~~~--Gi~v~~~~i~Gl-get~ed~~~~l~~l~~l~~~~~~v~i~~~~ 273 (289)
+|+.+++. ++.+..++-+.- |-+.+ =.+.++..++.+..++.|+++.+-
T Consensus 129 al~~Lq~~~p~l~vs~Tlp~~p~gl~~~-g~~~l~~a~~~Gv~~d~VNiMtmD 180 (294)
T cd06543 129 ALALLQKEYPDLKISFTLPVLPTGLTPD-GLNVLEAAAANGVDLDTVNIMTMD 180 (294)
T ss_pred HHHHHHHHCCCcEEEEecCCCCCCCChh-HHHHHHHHHHcCCCcceeeeeeec
Confidence 88888885 555555543322 32322 234555566554346788887764
No 275
>PF01136 Peptidase_U32: Peptidase family U32 This is family U32 in the peptidase classification. ; InterPro: IPR001539 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. The peptidases families associated with clan U- have an unknown catalytic mechanism as the protein fold of the active site domain and the active site residues have not been reported. This is a group of peptidases belonging to MEROPS peptidase family U32 (clan U-). The type example is collagenase (gene prtC) from Porphyromonas gingivalis (Bacteroides gingivalis) [], which is an enzyme that degrades type I collagen and that seems to require a metal cofactor. The product of PrtC is evolutionary related to a number of uncharacterised proteins with a well conserved region containing two cysteines.; GO: 0008233 peptidase activity, 0006508 proteolysis
Probab=88.23 E-value=4.5 Score=33.90 Aligned_cols=71 Identities=20% Similarity=0.290 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHHcCCcEEEEecccCCCCCCchhHHHHHHHHHHHHhcCceEEEe--CCCCCHHHHHHHHHcCCCeEecCC
Q 022946 125 DAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMGMEVCCT--LGMLEKHQAIELKKAGLTAYNHNL 202 (289)
Q Consensus 125 eei~~~~~~~~~~g~~~i~i~~~~~~~~ge~~~~~~l~e~i~~ik~~~~~i~~~--~g~l~~e~l~~L~~aG~~~v~i~l 202 (289)
+++.+.++.+.+.|++.|.+.. ..++++++... .++++..+ ....+.+.++.+++.|++++.++.
T Consensus 2 ~~~~~~l~~l~~~g~dgi~v~~------------~g~~~~~k~~~-~~~~i~~~~~~nv~N~~s~~~~~~~G~~~i~ls~ 68 (233)
T PF01136_consen 2 EELEKYLDKLKELGVDGILVSN------------PGLLELLKELG-PDLKIIADYSLNVFNSESARFLKELGASRITLSP 68 (233)
T ss_pred hHHHHHHHHHHhCCCCEEEEcC------------HHHHHHHHHhC-CCCcEEEecCccCCCHHHHHHHHHcCCCEEEECc
Confidence 5677888888899999987643 23444444331 13444333 455788889999999999999888
Q ss_pred Cch-HHH
Q 022946 203 DTS-REF 208 (289)
Q Consensus 203 et~-~~~ 208 (289)
|-. +++
T Consensus 69 EL~~~ei 75 (233)
T PF01136_consen 69 ELSLEEI 75 (233)
T ss_pred cCCHHHH
Confidence 775 443
No 276
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=87.94 E-value=9.4 Score=28.53 Aligned_cols=69 Identities=16% Similarity=0.198 Sum_probs=45.9
Q ss_pred CCHHHHHHHHHHHHHcCCcEEEEecccCCCCCCchhHHHHHHHHHHHHhcCc---eEEEeCCCCCHHHHHHHHHcCCCeE
Q 022946 122 MTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMGM---EVCCTLGMLEKHQAIELKKAGLTAY 198 (289)
Q Consensus 122 ~~~eei~~~~~~~~~~g~~~i~i~~~~~~~~ge~~~~~~l~e~i~~ik~~~~---~i~~~~g~l~~e~l~~L~~aG~~~v 198 (289)
.|++++.+.+. +.+.+-|.+++.. ....+.+.++++.+++.+. .+.. .|....+..++++++|++.+
T Consensus 37 vp~e~~~~~a~---~~~~d~V~iS~~~------~~~~~~~~~~~~~L~~~~~~~i~i~~-GG~~~~~~~~~~~~~G~d~~ 106 (122)
T cd02071 37 QTPEEIVEAAI---QEDVDVIGLSSLS------GGHMTLFPEVIELLRELGAGDILVVG-GGIIPPEDYELLKEMGVAEI 106 (122)
T ss_pred CCHHHHHHHHH---HcCCCEEEEcccc------hhhHHHHHHHHHHHHhcCCCCCEEEE-ECCCCHHHHHHHHHCCCCEE
Confidence 57888777655 5677888876522 2355667777777775533 3322 34456777899999999877
Q ss_pred ec
Q 022946 199 NH 200 (289)
Q Consensus 199 ~i 200 (289)
..
T Consensus 107 ~~ 108 (122)
T cd02071 107 FG 108 (122)
T ss_pred EC
Confidence 54
No 277
>PRK14847 hypothetical protein; Provisional
Probab=87.94 E-value=19 Score=32.12 Aligned_cols=115 Identities=7% Similarity=-0.016 Sum_probs=64.7
Q ss_pred CCCCHHHHHHHHHHHHHcCCcEEEEecccCCCCCCchhHHHHHHHHHHHHhc-----CceEEEeCCCCCHH----HHHHH
Q 022946 120 KLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDM-----GMEVCCTLGMLEKH----QAIEL 190 (289)
Q Consensus 120 ~~~~~eei~~~~~~~~~~g~~~i~i~~~~~~~~ge~~~~~~l~e~i~~ik~~-----~~~i~~~~g~l~~e----~l~~L 190 (289)
-.++.++=++.++.+.+.|++.|..+. +..+ +.. .+.++.+.+. ...+.+-.- ...+ .++.+
T Consensus 49 v~fs~eeKl~IA~~L~~lGVd~IEvG~---Pa~s-~~e----~e~ir~I~~~~~~~~~~~i~~~~r-~~~~dId~a~e~~ 119 (333)
T PRK14847 49 EPMDGARKLRLFEQLVAVGLKEIEVAF---PSAS-QTD----FDFVRKLIDERRIPDDVTIEALTQ-SRPDLIARTFEAL 119 (333)
T ss_pred CCCCHHHHHHHHHHHHHcCCCEEEeeC---CCCC-HHH----HHHHHHHHHhCCCCCCcEEEEEec-CcHHHHHHHHHHh
Confidence 348999999999999999999997653 1122 223 3344444322 233332222 2233 34444
Q ss_pred HHcCCCeEecCCCchHHHH-hccCCC--CCHHHHHHHHHHHHHcCCce---eecEEeec
Q 022946 191 KKAGLTAYNHNLDTSREFY-SKIITT--RSYDERLETLKHVREAGINV---CSGGIIGL 243 (289)
Q Consensus 191 ~~aG~~~v~i~let~~~~~-~~i~~~--~~~~~~~~~i~~~~~~Gi~v---~~~~i~Gl 243 (289)
+.++...|.+.+-+++-.. .+++.. .-.+...++++.+++.|... ...+-+|.
T Consensus 120 ~~~~~~~Vhi~~p~Sd~h~~~kl~~s~~~vl~~~~~~v~~Ak~~~~~~~g~~~~V~~~~ 178 (333)
T PRK14847 120 AGSPRAIVHLYNPIAPQWRRIVFGMSRAEIKEIALAGTRQIRALADANPGTQWIYEYSP 178 (333)
T ss_pred CCCCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHhccccCCCceEEEEee
Confidence 4455567888888773333 334332 12455566778888886631 12355666
No 278
>PTZ00124 adenosine deaminase; Provisional
Probab=87.89 E-value=6.5 Score=35.60 Aligned_cols=79 Identities=10% Similarity=0.193 Sum_probs=47.0
Q ss_pred CCHHHHHHHHHHHHHcCCcEEEEecccCCCCCCchhHHHHHHHHHHHHhcCceEEEeCCCC----C-HHHHHHHHHcCCC
Q 022946 122 MTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMGMEVCCTLGML----E-KHQAIELKKAGLT 196 (289)
Q Consensus 122 ~~~eei~~~~~~~~~~g~~~i~i~~~~~~~~ge~~~~~~l~e~i~~ik~~~~~i~~~~g~l----~-~e~l~~L~~aG~~ 196 (289)
.+++...+.++.+.++.-. | +|- +..|.+..+..+.++++.+++.|+.+..+.|.. + .+..+.+...|.+
T Consensus 174 ~~~e~a~e~~~~a~~~~~~-v--vGi--DLaG~E~~~~~f~~~f~~Ar~~Gl~~t~HaGE~~~~~~~~~v~~ai~~l~~~ 248 (362)
T PTZ00124 174 HDAAPIKESADFCLKHKAD-F--VGF--DHAGHEVDLKPFKDIFDYVREAGVNLTVHAGEDVTLPNLNTLYSAIQVLKVK 248 (362)
T ss_pred CCHHHHHHHHHHHHhccCC-e--EEE--eccCCCCCcHHHHHHHHHHHHCCCCEEEEeCCCCCCCcchhHHHHHHHhCCC
Confidence 3556655555555543211 2 221 122323234557777777777788877776642 1 3456777778999
Q ss_pred eEecCCCch
Q 022946 197 AYNHNLDTS 205 (289)
Q Consensus 197 ~v~i~let~ 205 (289)
+|.+|+...
T Consensus 249 RIGHG~~~~ 257 (362)
T PTZ00124 249 RIGHGIRVA 257 (362)
T ss_pred ccccccccC
Confidence 999988774
No 279
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=87.84 E-value=11 Score=31.42 Aligned_cols=68 Identities=16% Similarity=0.083 Sum_probs=47.9
Q ss_pred CCHHHHHHHHHHHHHcCCcEEEEecccCCCCCCchhHHHHHHHHHHHH-hcC--ceEEEeCCC-CCHHHHHHHHHcCCCe
Q 022946 122 MTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIR-DMG--MEVCCTLGM-LEKHQAIELKKAGLTA 197 (289)
Q Consensus 122 ~~~eei~~~~~~~~~~g~~~i~i~~~~~~~~ge~~~~~~l~e~i~~ik-~~~--~~i~~~~g~-l~~e~l~~L~~aG~~~ 197 (289)
.+.++.+..++.+.+.|++.+.++-. . | .-++.++.++ +.+ .++.+-.|+ ++.+.++...++|.+.
T Consensus 22 ~~~~~a~~~~~al~~~Gi~~iEit~~--~----~----~a~~~i~~l~~~~~~~p~~~vGaGTV~~~~~~~~a~~aGA~F 91 (213)
T PRK06552 22 ESKEEALKISLAVIKGGIKAIEVTYT--N----P----FASEVIKELVELYKDDPEVLIGAGTVLDAVTARLAILAGAQF 91 (213)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEECC--C----c----cHHHHHHHHHHHcCCCCCeEEeeeeCCCHHHHHHHHHcCCCE
Confidence 48899999999999999998877541 1 2 2445555555 232 245555554 8999999999999976
Q ss_pred Ee
Q 022946 198 YN 199 (289)
Q Consensus 198 v~ 199 (289)
+-
T Consensus 92 iv 93 (213)
T PRK06552 92 IV 93 (213)
T ss_pred EE
Confidence 54
No 280
>PRK07535 methyltetrahydrofolate:corrinoid/iron-sulfur protein methyltransferase; Validated
Probab=87.84 E-value=17 Score=31.31 Aligned_cols=132 Identities=14% Similarity=0.121 Sum_probs=74.3
Q ss_pred CCHHHHHHHHHHHHHcCCcEEEEecccCCCCCCchhHHHHHHHHHHHHh-cCceEEEeCCCCCHHHHHHHHHc--CCCeE
Q 022946 122 MTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRD-MGMEVCCTLGMLEKHQAIELKKA--GLTAY 198 (289)
Q Consensus 122 ~~~eei~~~~~~~~~~g~~~i~i~~~~~~~~ge~~~~~~l~e~i~~ik~-~~~~i~~~~g~l~~e~l~~L~~a--G~~~v 198 (289)
.+.+.+++.++...+.|.+-+-++++. .+ ....+++..+++.+++ .++.+ +..+.+.+.+++-.++ |.+-|
T Consensus 22 ~d~~~i~~~A~~~~~~GAdiIDVg~~~---~~-~eE~~r~~~~v~~l~~~~~~pl--sIDT~~~~v~eaaL~~~~G~~iI 95 (261)
T PRK07535 22 KDAAFIQKLALKQAEAGADYLDVNAGT---AV-EEEPETMEWLVETVQEVVDVPL--CIDSPNPAAIEAGLKVAKGPPLI 95 (261)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEECCCC---Cc-hhHHHHHHHHHHHHHHhCCCCE--EEeCCCHHHHHHHHHhCCCCCEE
Confidence 578899999999999999888776532 11 2345677777777763 34433 2333445555544444 55544
Q ss_pred e-cCCCc--hHHHHh---ccC----------C--CCC----HHHHHHHHHHHHHcCC---ceeecEEeec-CCCHHHHHH
Q 022946 199 N-HNLDT--SREFYS---KII----------T--TRS----YDERLETLKHVREAGI---NVCSGGIIGL-GEAEEDRVG 252 (289)
Q Consensus 199 ~-i~let--~~~~~~---~i~----------~--~~~----~~~~~~~i~~~~~~Gi---~v~~~~i~Gl-get~ed~~~ 252 (289)
+ ++.+. .+++.+ +.. . +.+ .+...+.++.+.++|+ ++..+-.+|. +-+.++..+
T Consensus 96 NsIs~~~~~~~~~~~l~~~~g~~vv~m~~~~~g~P~t~~~~~~~l~~~v~~a~~~GI~~~~IilDPgi~~~~~~~~~~~~ 175 (261)
T PRK07535 96 NSVSAEGEKLEVVLPLVKKYNAPVVALTMDDTGIPKDAEDRLAVAKELVEKADEYGIPPEDIYIDPLVLPLSAAQDAGPE 175 (261)
T ss_pred EeCCCCCccCHHHHHHHHHhCCCEEEEecCCCCCCCCHHHHHHHHHHHHHHHHHcCCCHhHEEEeCCCCcccCChHHHHH
Confidence 3 33322 122211 110 0 112 3444556777888999 4777777774 666665655
Q ss_pred HHHHHhc
Q 022946 253 LLHTLAT 259 (289)
Q Consensus 253 ~l~~l~~ 259 (289)
+++.++.
T Consensus 176 ~l~~i~~ 182 (261)
T PRK07535 176 VLETIRR 182 (261)
T ss_pred HHHHHHH
Confidence 5555443
No 281
>COG5016 Pyruvate/oxaloacetate carboxyltransferase [Energy production and conversion]
Probab=87.83 E-value=5 Score=36.43 Aligned_cols=135 Identities=11% Similarity=0.124 Sum_probs=69.4
Q ss_pred CCHHHHHHHHHHHHHcCCcEEEEecccCCCCCCchhHHHHHHHHHHHHhc----CceE----EEeCCC--CCHHHHHHH-
Q 022946 122 MTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDM----GMEV----CCTLGM--LEKHQAIEL- 190 (289)
Q Consensus 122 ~~~eei~~~~~~~~~~g~~~i~i~~~~~~~~ge~~~~~~l~e~i~~ik~~----~~~i----~~~~g~--l~~e~l~~L- 190 (289)
+..++.+-.++.+.+.|+.++.+-||-.+..--...-++=.+.++.+|+. .+.. ....|+ ..+++++.+
T Consensus 25 mrt~DmlPi~e~lD~~G~~slE~WGGATFDaciRfLnEDPWeRLr~lk~~~~nT~LQMLlRGQNlvGYrhyaDDvVe~Fv 104 (472)
T COG5016 25 MRTEDMLPIAEALDKVGYWSLEVWGGATFDACIRFLNEDPWERLRELKKAVPNTKLQMLLRGQNLVGYRHYADDVVEKFV 104 (472)
T ss_pred HhHHhhHHHHHHHHhcCeeEEEecCCccHHHHHHHhcCCHHHHHHHHHHhCCCcHHHHHHccCccccccCCchHHHHHHH
Confidence 67888899999999999998877554322110000002223333444421 1111 111232 345555444
Q ss_pred ---HHcCCCeEecCCCchHHHHhccCCCCCHHHHHHHHHHHHHcCCceeecEEeec--CCCHHHHHHHHHHHhcCCCCCC
Q 022946 191 ---KKAGLTAYNHNLDTSREFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGL--GEAEEDRVGLLHTLATLPTHPE 265 (289)
Q Consensus 191 ---~~aG~~~v~i~let~~~~~~~i~~~~~~~~~~~~i~~~~~~Gi~v~~~~i~Gl--get~ed~~~~l~~l~~l~~~~~ 265 (289)
.+.|+|.+.+ |+.+ ++......+++.+++.|..+...+.+-. -+|.+-..+..+.+.++ +++
T Consensus 105 ~ka~~nGidvfRi--------FDAl---ND~RNl~~ai~a~kk~G~h~q~~i~YT~sPvHt~e~yv~~akel~~~--g~D 171 (472)
T COG5016 105 EKAAENGIDVFRI--------FDAL---NDVRNLKTAIKAAKKHGAHVQGTISYTTSPVHTLEYYVELAKELLEM--GVD 171 (472)
T ss_pred HHHHhcCCcEEEe--------chhc---cchhHHHHHHHHHHhcCceeEEEEEeccCCcccHHHHHHHHHHHHHc--CCC
Confidence 4457776543 2222 2334445566666666665444444433 56666666666666666 456
Q ss_pred eeee
Q 022946 266 SVPI 269 (289)
Q Consensus 266 ~v~i 269 (289)
++.|
T Consensus 172 SIci 175 (472)
T COG5016 172 SICI 175 (472)
T ss_pred EEEe
Confidence 6554
No 282
>PRK10550 tRNA-dihydrouridine synthase C; Provisional
Probab=87.81 E-value=8.4 Score=34.10 Aligned_cols=100 Identities=13% Similarity=0.174 Sum_probs=65.4
Q ss_pred HHHHHHHHHHHHHcCCcEEEEecccCCC--CCCchhHHHHHHHHHHHH-hcCceEEEeCCCCCHHHHHHHH-HcCCCeEe
Q 022946 124 KDAVMQAAQKAKEAGSTRFCMGAAWRDT--IGRKTNFNQILEYVKDIR-DMGMEVCCTLGMLEKHQAIELK-KAGLTAYN 199 (289)
Q Consensus 124 ~eei~~~~~~~~~~g~~~i~i~~~~~~~--~ge~~~~~~l~e~i~~ik-~~~~~i~~~~g~l~~e~l~~L~-~aG~~~v~ 199 (289)
.++..+.++.+.+.|++.+++.+..... .|.+..+ +.++.++ ..++.+..+.+..+.+.++++. ..|+|.|.
T Consensus 147 ~~~~~~~a~~l~~~Gvd~i~Vh~Rt~~~~y~g~~~~~----~~i~~ik~~~~iPVi~nGdI~t~~da~~~l~~~g~DgVm 222 (312)
T PRK10550 147 GERKFEIADAVQQAGATELVVHGRTKEDGYRAEHINW----QAIGEIRQRLTIPVIANGEIWDWQSAQQCMAITGCDAVM 222 (312)
T ss_pred chHHHHHHHHHHhcCCCEEEECCCCCccCCCCCcccH----HHHHHHHhhcCCcEEEeCCcCCHHHHHHHHhccCCCEEE
Confidence 3556777788888999999886532211 1211122 5566666 3578888888888888887755 57999999
Q ss_pred cCCCch--HHHHhccCC---CCCHHHHHHHHHH
Q 022946 200 HNLDTS--REFYSKIIT---TRSYDERLETLKH 227 (289)
Q Consensus 200 i~let~--~~~~~~i~~---~~~~~~~~~~i~~ 227 (289)
+|=-.. |..++.+.. ..+++++++.+..
T Consensus 223 iGRg~l~nP~lf~~~~~g~~~~~~~e~~~~~~~ 255 (312)
T PRK10550 223 IGRGALNIPNLSRVVKYNEPRMPWPEVVALLQK 255 (312)
T ss_pred EcHHhHhCcHHHHHhhcCCCCCCHHHHHHHHHH
Confidence 975554 667766543 2356666665554
No 283
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain. This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex
Probab=87.74 E-value=3 Score=36.18 Aligned_cols=99 Identities=16% Similarity=0.273 Sum_probs=59.3
Q ss_pred CCHHHHHHHHHHHHHcCCcEEEEecccCCCCCCchhHHHHHHHHHHHHh-cC--ceEEE--eCCCCCHHHHHHHHHcCCC
Q 022946 122 MTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRD-MG--MEVCC--TLGMLEKHQAIELKKAGLT 196 (289)
Q Consensus 122 ~~~eei~~~~~~~~~~g~~~i~i~~~~~~~~ge~~~~~~l~e~i~~ik~-~~--~~i~~--~~g~l~~e~l~~L~~aG~~ 196 (289)
.+++.+.+.++.+.+.|++.|.+.. +.|- ..-..+.++++.+++ .+ +.++. +.|.-....+..+ ++|++
T Consensus 146 ~~~~~~~~~~~~~~~~Ga~~i~l~D----T~G~-~~P~~v~~lv~~l~~~~~~~l~~H~Hnd~GlA~aN~laA~-~aGa~ 219 (275)
T cd07937 146 HTLEYYVKLAKELEDMGADSICIKD----MAGL-LTPYAAYELVKALKKEVGLPIHLHTHDTSGLAVATYLAAA-EAGVD 219 (275)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEcC----CCCC-CCHHHHHHHHHHHHHhCCCeEEEEecCCCChHHHHHHHHH-HhCCC
Confidence 4788899999999999999998854 2221 122455555655552 23 33344 3455445555555 57999
Q ss_pred eEecCCCch-HHHHhccCCCCCHHHHHHHHHHHHHcCCc
Q 022946 197 AYNHNLDTS-REFYSKIITTRSYDERLETLKHVREAGIN 234 (289)
Q Consensus 197 ~v~i~let~-~~~~~~i~~~~~~~~~~~~i~~~~~~Gi~ 234 (289)
.|..++.+. +. ...-..++++..++ +.|+.
T Consensus 220 ~vd~sv~GlG~~-----aGN~~~E~l~~~L~---~~g~~ 250 (275)
T cd07937 220 IVDTAISPLSGG-----TSQPSTESMVAALR---GTGRD 250 (275)
T ss_pred EEEEecccccCC-----cCChhHHHHHHHHH---ccCCC
Confidence 999888775 32 11224555555554 33554
No 284
>PF00478 IMPDH: IMP dehydrogenase / GMP reductase domain; InterPro: IPR001093 Synonym(s): Inosine-5'-monophosphate dehydrogenase, Inosinic acid dehydrogenase; Synonym(s): Guanosine 5'-monophosphate oxidoreductase This entry contains two related enzymes IMP dehydrogenase and GMP reducatase. These enzymes adopt a TIM barrel structure. IMP dehydrogenase (1.1.1.205 from EC) (IMPDH) catalyzes the rate-limiting reaction of de novo GTP biosynthesis, the NAD-dependent reduction of IMP into XMP []. Inosine 5-phosphate + NAD+ + H2O = xanthosine 5-phosphate + NADH IMP dehydrogenase is associated with cell proliferation and is a possible target for cancer chemotherapy. Mammalian and bacterial IMPDHs are tetramers of identical chains. There are two IMP dehydrogenase isozymes in humans []. IMP dehydrogenase nearly always contains a long insertion that has two CBS domains within it. GMP reductase (1.7.1.7 from EC) catalyzes the irreversible and NADPH-dependent reductive deamination of GMP into IMP []. NADPH + guanosine 5-phosphate = NADP+ + inosine 5-phosphate + NH3 It converts nucleobase, nucleoside and nucleotide derivatives of G to A nucleotides, and maintains intracellular balance of A and G nucleotides.; GO: 0003824 catalytic activity, 0055114 oxidation-reduction process; PDB: 3FFS_D 1VRD_A 1JCN_B 1EEP_B 3TSB_B 3USB_B 3TSD_A 4FF0_A 4FEZ_A 3KHJ_D ....
Probab=87.67 E-value=5.3 Score=35.90 Aligned_cols=116 Identities=18% Similarity=0.225 Sum_probs=70.3
Q ss_pred HHHHHHHHHcCCcEEEEecccCCCCCCchhHHHHHHHHHHHHhc-C-ceEEEeCCCCCHHHHHHHHHcCCCeEecCCCch
Q 022946 128 MQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDM-G-MEVCCTLGMLEKHQAIELKKAGLTAYNHNLDTS 205 (289)
Q Consensus 128 ~~~~~~~~~~g~~~i~i~~~~~~~~ge~~~~~~l~e~i~~ik~~-~-~~i~~~~g~l~~e~l~~L~~aG~~~v~i~let~ 205 (289)
.+.++.+.+.|++-+++-... | +-+.+.+.++.+|+. + +.+..-| ..+.+..+.|.++|+|.|-+|+-..
T Consensus 110 ~er~~~L~~agvD~ivID~a~----g---~s~~~~~~ik~ik~~~~~~~viaGN-V~T~e~a~~L~~aGad~vkVGiGpG 181 (352)
T PF00478_consen 110 FERAEALVEAGVDVIVIDSAH----G---HSEHVIDMIKKIKKKFPDVPVIAGN-VVTYEGAKDLIDAGADAVKVGIGPG 181 (352)
T ss_dssp HHHHHHHHHTT-SEEEEE-SS----T---TSHHHHHHHHHHHHHSTTSEEEEEE-E-SHHHHHHHHHTT-SEEEESSSSS
T ss_pred HHHHHHHHHcCCCEEEccccC----c---cHHHHHHHHHHHHHhCCCceEEecc-cCCHHHHHHHHHcCCCEEEEeccCC
Confidence 444556667899988885421 2 346788888888844 3 5554433 5789999999999999999987653
Q ss_pred -HHHHhccCC-C-CCHHHHHHHHHHHHHcCCceeecEEeecCCCHHHHHHHH
Q 022946 206 -REFYSKIIT-T-RSYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLL 254 (289)
Q Consensus 206 -~~~~~~i~~-~-~~~~~~~~~i~~~~~~Gi~v~~~~i~Glget~ed~~~~l 254 (289)
-=+-+.+.. + .....+.++-+.+++.|+++.++-= -.+.-|+..-+
T Consensus 182 siCtTr~v~GvG~PQ~tAv~~~a~~a~~~~v~iIADGG---i~~sGDi~KAl 230 (352)
T PF00478_consen 182 SICTTREVTGVGVPQLTAVYECAEAARDYGVPIIADGG---IRTSGDIVKAL 230 (352)
T ss_dssp TTBHHHHHHSBSCTHHHHHHHHHHHHHCTTSEEEEESS----SSHHHHHHHH
T ss_pred cccccccccccCCcHHHHHHHHHHHhhhccCceeecCC---cCcccceeeee
Confidence 111111111 1 2467778888888888887644321 12445555443
No 285
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=87.61 E-value=6.5 Score=35.15 Aligned_cols=78 Identities=12% Similarity=0.158 Sum_probs=49.9
Q ss_pred CCHHHHHHHHHHHHHcCCcEEEEecccCCCCCCchhHHHHHHHHHHHH-hcC----ceEEEe--CCCCCHHHHHHHHHcC
Q 022946 122 MTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIR-DMG----MEVCCT--LGMLEKHQAIELKKAG 194 (289)
Q Consensus 122 ~~~eei~~~~~~~~~~g~~~i~i~~~~~~~~ge~~~~~~l~e~i~~ik-~~~----~~i~~~--~g~l~~e~l~~L~~aG 194 (289)
.+++++.+.++.+.+.|++.|++... .| -..-+++.++++.++ ..+ +.++.+ .|.-....+.. .++|
T Consensus 140 ~~~e~l~~~a~~~~~~Ga~~i~i~DT----~G-~~~P~~v~~~v~~l~~~l~~~i~ig~H~HnnlGla~ANslaA-i~aG 213 (333)
T TIGR03217 140 TPPEKLAEQAKLMESYGADCVYIVDS----AG-AMLPDDVRDRVRALKAVLKPETQVGFHAHHNLSLAVANSIAA-IEAG 213 (333)
T ss_pred CCHHHHHHHHHHHHhcCCCEEEEccC----CC-CCCHHHHHHHHHHHHHhCCCCceEEEEeCCCCchHHHHHHHH-HHhC
Confidence 47899999999999999999988642 22 123355666666655 222 333443 45433344444 4689
Q ss_pred CCeEecCCCch
Q 022946 195 LTAYNHNLDTS 205 (289)
Q Consensus 195 ~~~v~i~let~ 205 (289)
+++|..++.+.
T Consensus 214 a~~iD~Sl~G~ 224 (333)
T TIGR03217 214 ATRIDASLRGL 224 (333)
T ss_pred CCEEEeecccc
Confidence 99998887664
No 286
>PRK13307 bifunctional formaldehyde-activating enzyme/3-hexulose-6-phosphate synthase; Provisional
Probab=87.10 E-value=13 Score=33.94 Aligned_cols=122 Identities=14% Similarity=0.088 Sum_probs=69.2
Q ss_pred CCHHHHHHHHHHHHHcCCcEEEEecccCCCCCCchhHHHHHHHHHHHHhcC--ceEEEeCCCCCH--HHHHHHHHcCCCe
Q 022946 122 MTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMG--MEVCCTLGMLEK--HQAIELKKAGLTA 197 (289)
Q Consensus 122 ~~~eei~~~~~~~~~~g~~~i~i~~~~~~~~ge~~~~~~l~e~i~~ik~~~--~~i~~~~g~l~~--e~l~~L~~aG~~~ 197 (289)
.+.++.++.++.+.+.+...+-+ |-++....=.+.++.+++.+ ..+....-..+. -.++.+.++|++.
T Consensus 182 ~~~~~A~~i~~~l~~~~~~~iKv--------G~~L~~~~G~~iVk~Lr~~~~~~~I~~DLK~~Di~~~vv~~~a~aGAD~ 253 (391)
T PRK13307 182 PDLEEVERVLSQLPKSDHIIIEA--------GTPLIKKFGLEVISKIREVRPDAFIVADLKTLDTGNLEARMAADATADA 253 (391)
T ss_pred CCHHHHHHHHHhcccccceEEEE--------CHHHHHHhCHHHHHHHHHhCCCCeEEEEecccChhhHHHHHHHhcCCCE
Confidence 46777777777665443332222 22444444467777777553 345444333222 2367899999999
Q ss_pred EecCCCchHHHHhccCCCCCHHHHHHHHHHHHHcCCceeecEEeecCCCHHHHHHHHHHHhcCCCCCCeeeecc
Q 022946 198 YNHNLDTSREFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINA 271 (289)
Q Consensus 198 v~i~let~~~~~~~i~~~~~~~~~~~~i~~~~~~Gi~v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~i~~ 271 (289)
+.+..++. .+...++++.+++.|+.+...++ + -+|..+..+-+ .. +++.+.++.
T Consensus 254 vTVH~ea~------------~~ti~~ai~~akk~GikvgVD~l-n-p~tp~e~i~~l----~~--~vD~Vllht 307 (391)
T PRK13307 254 VVISGLAP------------ISTIEKAIHEAQKTGIYSILDML-N-VEDPVKLLESL----KV--KPDVVELHR 307 (391)
T ss_pred EEEeccCC------------HHHHHHHHHHHHHcCCEEEEEEc-C-CCCHHHHHHHh----hC--CCCEEEEcc
Confidence 99887653 34456678888888876543322 2 24444333322 22 356666665
No 287
>TIGR03569 NeuB_NnaB N-acetylneuraminate synthase. This family is a subset of the Pfam model pfam03102 and is believed to include only authentic NeuB N-acetylneuraminate (sialic acid) synthase enzymes. The majority of the genes identified by this model are observed adjacent to both the NeuA and NeuC genes which together effect the biosynthesis of CMP-N-acetylneuraminate from UDP-N-acetylglucosamine.
Probab=87.02 E-value=11 Score=33.58 Aligned_cols=109 Identities=16% Similarity=0.160 Sum_probs=70.3
Q ss_pred CHHHHHHHHHHHHHcCCcEEEEecccCCC-----------------CCCc---------hhHHHHHHHHHHHHhcCceEE
Q 022946 123 TKDAVMQAAQKAKEAGSTRFCMGAAWRDT-----------------IGRK---------TNFNQILEYVKDIRDMGMEVC 176 (289)
Q Consensus 123 ~~eei~~~~~~~~~~g~~~i~i~~~~~~~-----------------~ge~---------~~~~~l~e~i~~ik~~~~~i~ 176 (289)
+.+...+.++.+.+.|++-|-|+.-..+. .|++ ...+++.++.+..++.|+.+.
T Consensus 14 dl~~A~~lI~~A~~aGadaVKfQt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~e~~~~L~~~~~~~Gi~~~ 93 (329)
T TIGR03569 14 SLELAKKLVDAAAEAGADAVKFQTFKAEDLVSKNAPKAEYQKINTGAEESQLEMLKKLELSEEDHRELKEYCESKGIEFL 93 (329)
T ss_pred cHHHHHHHHHHHHHhCCCEEEeeeCCHHHhhCcccccccccccCCcCCCcHHHHHHHhCCCHHHHHHHHHHHHHhCCcEE
Confidence 66778888888888998888776420000 0110 112344444455556788887
Q ss_pred EeCCCCCHHHHHHHHHcCCCeEec-CCCch-HHHHhccCC---------C-CCHHHHHHHHHHHHHcCC
Q 022946 177 CTLGMLEKHQAIELKKAGLTAYNH-NLDTS-REFYSKIIT---------T-RSYDERLETLKHVREAGI 233 (289)
Q Consensus 177 ~~~g~l~~e~l~~L~~aG~~~v~i-~let~-~~~~~~i~~---------~-~~~~~~~~~i~~~~~~Gi 233 (289)
++. ++.+.++.|.+.|++.+.+ |-|.. -.+++.+.. + .+.+++.++++.+++.|-
T Consensus 94 stp--fd~~svd~l~~~~v~~~KIaS~~~~n~pLL~~~A~~gkPvilStGmatl~Ei~~Av~~i~~~G~ 160 (329)
T TIGR03569 94 STP--FDLESADFLEDLGVPRFKIPSGEITNAPLLKKIARFGKPVILSTGMATLEEIEAAVGVLRDAGT 160 (329)
T ss_pred EEe--CCHHHHHHHHhcCCCEEEECcccccCHHHHHHHHhcCCcEEEECCCCCHHHHHHHHHHHHHcCC
Confidence 765 7789999999999999987 44444 444444432 1 257888888888877764
No 288
>PRK13523 NADPH dehydrogenase NamA; Provisional
Probab=86.93 E-value=3.4 Score=37.03 Aligned_cols=79 Identities=14% Similarity=0.020 Sum_probs=38.2
Q ss_pred CHHHHHHHHHHHHHcCCcEEEEecccCCCCCCchhHHHHHHHHHHHHh-cCceEEEeCCCCCHHHHHHHHHcC-CCeEec
Q 022946 123 TKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRD-MGMEVCCTLGMLEKHQAIELKKAG-LTAYNH 200 (289)
Q Consensus 123 ~~eei~~~~~~~~~~g~~~i~i~~~~~~~~ge~~~~~~l~e~i~~ik~-~~~~i~~~~g~l~~e~l~~L~~aG-~~~v~i 200 (289)
+.++.++.++.+.+.|++.+.+.++...+...+..-....++.+.+|+ .++.+..+.+..+.+.++++.+.| +|.|.+
T Consensus 225 ~~~e~~~i~~~l~~~gvD~i~vs~g~~~~~~~~~~~~~~~~~~~~ik~~~~ipVi~~G~i~~~~~a~~~l~~g~~D~V~~ 304 (337)
T PRK13523 225 TVQDYVQYAKWMKEQGVDLIDVSSGAVVPARIDVYPGYQVPFAEHIREHANIATGAVGLITSGAQAEEILQNNRADLIFI 304 (337)
T ss_pred CHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCccccHHHHHHHHhhcCCcEEEeCCCCCHHHHHHHHHcCCCChHHh
Confidence 556666666666666666666654321100000000112334444442 345555555555666666666554 666555
Q ss_pred C
Q 022946 201 N 201 (289)
Q Consensus 201 ~ 201 (289)
+
T Consensus 305 g 305 (337)
T PRK13523 305 G 305 (337)
T ss_pred h
Confidence 4
No 289
>cd04723 HisA_HisF Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase (HisA) and the cyclase subunit of imidazoleglycerol phosphate synthase (HisF). The ProFAR isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene. The Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and pl
Probab=86.92 E-value=5.9 Score=33.42 Aligned_cols=75 Identities=19% Similarity=0.166 Sum_probs=52.0
Q ss_pred HHHHHHHHHHHcCCcEEEEecccCCCCCCchhHHHHHHHHHHHH-hcCceEEEeCCCCCHHHHHHHHHcCCCeEecCCCc
Q 022946 126 AVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIR-DMGMEVCCTLGMLEKHQAIELKKAGLTAYNHNLDT 204 (289)
Q Consensus 126 ei~~~~~~~~~~g~~~i~i~~~~~~~~ge~~~~~~l~e~i~~ik-~~~~~i~~~~g~l~~e~l~~L~~aG~~~v~i~let 204 (289)
..++.++.+.+.|++++++..-+.. .|.+.+. ++++.+. ..++++..-.|.-+.+.++.+.++|++++.++-++
T Consensus 36 dp~~~a~~~~~~g~~~l~i~DLd~~-~~~~~n~----~~i~~i~~~~~~~v~vgGGir~~edv~~~l~~Ga~~viigt~~ 110 (233)
T cd04723 36 DPLDVARAYKELGFRGLYIADLDAI-MGRGDND----EAIRELAAAWPLGLWVDGGIRSLENAQEWLKRGASRVIVGTET 110 (233)
T ss_pred CHHHHHHHHHHCCCCEEEEEeCccc-cCCCccH----HHHHHHHHhCCCCEEEecCcCCHHHHHHHHHcCCCeEEEccee
Confidence 3355566677889999998764322 2333343 3444443 34677777888889999999999999999888766
Q ss_pred h
Q 022946 205 S 205 (289)
Q Consensus 205 ~ 205 (289)
.
T Consensus 111 ~ 111 (233)
T cd04723 111 L 111 (233)
T ss_pred c
Confidence 4
No 290
>PRK14041 oxaloacetate decarboxylase; Provisional
Probab=86.88 E-value=17 Score=34.13 Aligned_cols=99 Identities=16% Similarity=0.278 Sum_probs=59.5
Q ss_pred CCHHHHHHHHHHHHHcCCcEEEEecccCCCCCCchhHHHHHHHHHHHH-hcC--ceEEEe--CCCCCHHHHHHHHHcCCC
Q 022946 122 MTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIR-DMG--MEVCCT--LGMLEKHQAIELKKAGLT 196 (289)
Q Consensus 122 ~~~eei~~~~~~~~~~g~~~i~i~~~~~~~~ge~~~~~~l~e~i~~ik-~~~--~~i~~~--~g~l~~e~l~~L~~aG~~ 196 (289)
.+.+.+++.++.+.+.|++.|+|.. +.|- ..=..+.++++.++ ..+ +.++++ .|.-....+. -.++|++
T Consensus 150 ~t~e~~~~~a~~l~~~Gad~I~i~D----t~G~-l~P~~v~~Lv~~lk~~~~vpI~~H~Hnt~GlA~AN~la-AieaGad 223 (467)
T PRK14041 150 HTLEYYLEFARELVDMGVDSICIKD----MAGL-LTPKRAYELVKALKKKFGVPVEVHSHCTTGLASLAYLA-AVEAGAD 223 (467)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEECC----ccCC-cCHHHHHHHHHHHHHhcCCceEEEecCCCCcHHHHHHH-HHHhCCC
Confidence 4789999999999999999999954 1221 12245666666666 333 334444 4543344344 3478999
Q ss_pred eEecCCCch-HHHHhccCCCCCHHHHHHHHHHHHHcCCc
Q 022946 197 AYNHNLDTS-REFYSKIITTRSYDERLETLKHVREAGIN 234 (289)
Q Consensus 197 ~v~i~let~-~~~~~~i~~~~~~~~~~~~i~~~~~~Gi~ 234 (289)
.|..++... +.. ..-+.++++.+++ ..|+.
T Consensus 224 ~vD~sv~~~g~ga-----gN~atE~lv~~L~---~~g~~ 254 (467)
T PRK14041 224 MFDTAISPFSMGT-----SQPPFESMYYAFR---ENGKE 254 (467)
T ss_pred EEEeeccccCCCC-----CChhHHHHHHHHH---hcCCC
Confidence 999888765 311 1224566655554 34554
No 291
>COG0854 PdxJ Pyridoxal phosphate biosynthesis protein [Coenzyme metabolism]
Probab=86.79 E-value=8.2 Score=32.07 Aligned_cols=80 Identities=11% Similarity=0.182 Sum_probs=51.9
Q ss_pred hHHHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHcCCCeEecCCCchHHHHhccCC---CCCHHHHHHHHHHHHHcCC
Q 022946 157 NFNQILEYVKDIRDMGMEVCCTLGMLEKHQAIELKKAGLTAYNHNLDTSREFYSKIIT---TRSYDERLETLKHVREAGI 233 (289)
Q Consensus 157 ~~~~l~e~i~~ik~~~~~i~~~~g~l~~e~l~~L~~aG~~~v~i~let~~~~~~~i~~---~~~~~~~~~~i~~~~~~Gi 233 (289)
..+.+.+.+++++..|+++..... -+.+.++.-++.|.++|.+----+.+.++.-.+ ..-++.+-++.+.+.+.|+
T Consensus 109 ~~~~l~~~v~~L~~~GirVSLFiD-~d~~qi~aa~~~gA~~IELhTG~Ya~~~~~~~~~~~~~el~rl~~~a~~A~~lGL 187 (243)
T COG0854 109 QLDKLRDAVRRLKNAGIRVSLFID-PDPEQIEAAAEVGAPRIELHTGPYADAHDAAEQARADAELERLAKAAKLAAELGL 187 (243)
T ss_pred hhhhHHHHHHHHHhCCCeEEEEeC-CCHHHHHHHHHhCCCEEEEecccccccCChHHHHHHHHHHHHHHHHHHHHHHcCc
Confidence 457888999999999998865544 678999999999999987532111111110000 0124455566666777888
Q ss_pred ceee
Q 022946 234 NVCS 237 (289)
Q Consensus 234 ~v~~ 237 (289)
.|+.
T Consensus 188 ~VnA 191 (243)
T COG0854 188 KVNA 191 (243)
T ss_pred eEec
Confidence 8764
No 292
>KOG0564 consensus 5,10-methylenetetrahydrofolate reductase [Amino acid transport and metabolism]
Probab=86.78 E-value=6 Score=36.80 Aligned_cols=120 Identities=22% Similarity=0.221 Sum_probs=71.7
Q ss_pred CCHHHHHHHHHHHHHcCCcEEEEecccCCCCCC------chhHHHHHHHHHHHH-hcCceEEEe-C----CC--------
Q 022946 122 MTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGR------KTNFNQILEYVKDIR-DMGMEVCCT-L----GM-------- 181 (289)
Q Consensus 122 ~~~eei~~~~~~~~~~g~~~i~i~~~~~~~~ge------~~~~~~l~e~i~~ik-~~~~~i~~~-~----g~-------- 181 (289)
++.+.|...++.+++.|++.|.-.-|+ ++.|. ...+...+++|+.++ ++|=.+++. . |.
T Consensus 89 ~~~~~Id~aLe~a~~~GirNILALRGD-pP~g~d~~~~~e~gF~yA~DLVr~Irs~YGDyF~IgVAgYPEghpe~~~~~~ 167 (590)
T KOG0564|consen 89 MPKEMIDKALEQAKALGIRNILALRGD-PPIGQDKWVEEEGGFRYAVDLVRYIRSKYGDYFCIGVAGYPEGHPEAPSHDY 167 (590)
T ss_pred ccHHHHHHHHHHHHHhCchhhhhhcCC-CCCCccccccccCCchhHHHHHHHHHHHhCCeEEEEeccCCCCCcCCcccch
Confidence 678999999999999999988433232 23332 235788999999999 454332222 1 11
Q ss_pred -CCHHHHHHHHHcCCCeEecCCCchHHHHhccCCCCCHHHHHHHHHHHHHcCCceeecEEeec--CCCHHHHHHHHHH
Q 022946 182 -LEKHQAIELKKAGLTAYNHNLDTSREFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGL--GEAEEDRVGLLHT 256 (289)
Q Consensus 182 -l~~e~l~~L~~aG~~~v~i~let~~~~~~~i~~~~~~~~~~~~i~~~~~~Gi~v~~~~i~Gl--get~ed~~~~l~~ 256 (289)
.+-+.+++=.++|.|.|---+ -...|..++.++.++++|+ ++-++.|+ .++...+.+...+
T Consensus 168 ~~Dl~yLk~KvdaGaDFIiTQl------------FYd~e~flkfv~~cR~~gi--~~PIvPGIMPI~~Y~sf~R~~kl 231 (590)
T KOG0564|consen 168 LADLPYLKEKVDAGADFIITQL------------FYDVETFLKFVKDCRAAGI--NVPIVPGIMPIQSYRSFLRIAKL 231 (590)
T ss_pred hhhhHHHHHhhcccchhhhhhh------------hcCHHHHHHHHHHHHHhCC--CCCcccccccchhHHHHHHHHHH
Confidence 122223333345665443211 1356788888888888888 44455565 5566555555444
No 293
>COG0685 MetF 5,10-methylenetetrahydrofolate reductase [Amino acid transport and metabolism]
Probab=86.70 E-value=15 Score=32.14 Aligned_cols=49 Identities=8% Similarity=-0.038 Sum_probs=34.6
Q ss_pred CCHHHHHHHHHHHHHcCCcEEEEecccCCCCCCchh-HHHHHHHHHHHHh
Q 022946 122 MTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTN-FNQILEYVKDIRD 170 (289)
Q Consensus 122 ~~~eei~~~~~~~~~~g~~~i~i~~~~~~~~ge~~~-~~~l~e~i~~ik~ 170 (289)
.+..++.+.++.+.+.|+++|....|+...++.+.. +.+-.++++.+|.
T Consensus 89 ~n~~~i~~~l~~~~~~Gi~~ilaLrGDpp~g~~~~~~~~~s~dLv~lik~ 138 (291)
T COG0685 89 RNRIEIISILKGAAALGIRNILALRGDPPAGDKPGGKDLYSVDLVELIKK 138 (291)
T ss_pred CCHHHHHHHHHHHHHhCCceEEEecCCCCCCCCCCccccCHHHHHHHHHH
Confidence 478999999999999999999876665431222222 5566777777763
No 294
>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=86.61 E-value=5.9 Score=35.11 Aligned_cols=80 Identities=15% Similarity=0.153 Sum_probs=49.3
Q ss_pred CCHHHHHHHHHHHHHcCCcEEEEecccCCCCCC-----chhHHHHHHHHHHHH-hcCceEEEeCCCCCHHHHHHHHHc-C
Q 022946 122 MTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGR-----KTNFNQILEYVKDIR-DMGMEVCCTLGMLEKHQAIELKKA-G 194 (289)
Q Consensus 122 ~~~eei~~~~~~~~~~g~~~i~i~~~~~~~~ge-----~~~~~~l~e~i~~ik-~~~~~i~~~~g~l~~e~l~~L~~a-G 194 (289)
.+.++.++.++.+.+.|++.+.+.++....... +......++.++.++ ...+.+..+.+..+.+.++++.+. |
T Consensus 225 ~~~~e~~~la~~l~~~G~d~i~vs~g~~~~~~~~~~~~~~~~~~~~~~~~~ir~~~~iPVi~~Ggi~t~~~a~~~l~~g~ 304 (327)
T cd02803 225 LTLEEAIEIAKALEEAGVDALHVSGGSYESPPPIIPPPYVPEGYFLELAEKIKKAVKIPVIAVGGIRDPEVAEEILAEGK 304 (327)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEeCCCCCcccccccCCCCCCcchhHHHHHHHHHHCCCCEEEeCCCCCHHHHHHHHHCCC
Confidence 356777788888888888888776543211000 000123445555555 346677777676777877777777 6
Q ss_pred CCeEecC
Q 022946 195 LTAYNHN 201 (289)
Q Consensus 195 ~~~v~i~ 201 (289)
+|.|.++
T Consensus 305 aD~V~ig 311 (327)
T cd02803 305 ADLVALG 311 (327)
T ss_pred CCeeeec
Confidence 8887775
No 295
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=86.56 E-value=9.7 Score=32.85 Aligned_cols=23 Identities=9% Similarity=0.218 Sum_probs=12.3
Q ss_pred CHHHHHHHHHHHHHcCCcEEEEe
Q 022946 123 TKDAVMQAAQKAKEAGSTRFCMG 145 (289)
Q Consensus 123 ~~eei~~~~~~~~~~g~~~i~i~ 145 (289)
+++.+.+.++.+.+.|++.|.+.
T Consensus 136 ~~~~~~~~~~~~~~~g~~~i~l~ 158 (266)
T cd07944 136 SDEELLELLELVNEIKPDVFYIV 158 (266)
T ss_pred CHHHHHHHHHHHHhCCCCEEEEe
Confidence 44555555555555555555553
No 296
>PLN02591 tryptophan synthase
Probab=86.50 E-value=20 Score=30.70 Aligned_cols=81 Identities=9% Similarity=0.143 Sum_probs=51.7
Q ss_pred CCHHHHHHHHHHHHHcCCcEEEEeccc----------------------CCCCCCc-hhHHHHHHHHHHHHh-cCceEEE
Q 022946 122 MTKDAVMQAAQKAKEAGSTRFCMGAAW----------------------RDTIGRK-TNFNQILEYVKDIRD-MGMEVCC 177 (289)
Q Consensus 122 ~~~eei~~~~~~~~~~g~~~i~i~~~~----------------------~~~~ge~-~~~~~l~e~i~~ik~-~~~~i~~ 177 (289)
++.||..+..+.+.++|+..|.+.... ....|.. ..-..+.+.++.+|+ .++.+.+
T Consensus 115 LP~ee~~~~~~~~~~~gl~~I~lv~Ptt~~~ri~~ia~~~~gFIY~Vs~~GvTG~~~~~~~~~~~~i~~vk~~~~~Pv~v 194 (250)
T PLN02591 115 LPLEETEALRAEAAKNGIELVLLTTPTTPTERMKAIAEASEGFVYLVSSTGVTGARASVSGRVESLLQELKEVTDKPVAV 194 (250)
T ss_pred CCHHHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHhCCCcEEEeeCCCCcCCCcCCchhHHHHHHHHHhcCCCceEE
Confidence 788888888888888888877665311 0011221 112445555666664 3566666
Q ss_pred eCCCCCHHHHHHHHHcCCCeEecCC
Q 022946 178 TLGMLEKHQAIELKKAGLTAYNHNL 202 (289)
Q Consensus 178 ~~g~l~~e~l~~L~~aG~~~v~i~l 202 (289)
-.|.-+.+.++++.++|.|.+-+|=
T Consensus 195 GFGI~~~e~v~~~~~~GADGvIVGS 219 (250)
T PLN02591 195 GFGISKPEHAKQIAGWGADGVIVGS 219 (250)
T ss_pred eCCCCCHHHHHHHHhcCCCEEEECH
Confidence 6777777888888888888777653
No 297
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=86.40 E-value=11 Score=32.56 Aligned_cols=81 Identities=9% Similarity=0.026 Sum_probs=53.0
Q ss_pred CCHHHHHHHHHHHHHcCCcEEEEecc----------------------cCCCCCCc-hhHHHHHHHHHHHHh-cCceEEE
Q 022946 122 MTKDAVMQAAQKAKEAGSTRFCMGAA----------------------WRDTIGRK-TNFNQILEYVKDIRD-MGMEVCC 177 (289)
Q Consensus 122 ~~~eei~~~~~~~~~~g~~~i~i~~~----------------------~~~~~ge~-~~~~~l~e~i~~ik~-~~~~i~~ 177 (289)
++.||..+..+.++++|+..+.+..- -....|.. ...+.+.++++.+|+ .+..+.+
T Consensus 128 LP~ee~~~~~~~~~~~gi~~I~lv~PtT~~eri~~i~~~a~gFIY~vS~~GvTG~~~~~~~~~~~~i~~ir~~t~~Pi~v 207 (263)
T CHL00200 128 LPYEESDYLISVCNLYNIELILLIAPTSSKSRIQKIARAAPGCIYLVSTTGVTGLKTELDKKLKKLIETIKKMTNKPIIL 207 (263)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEcCCCCCCCCccccHHHHHHHHHHHHhcCCCEEE
Confidence 67788777777777888776655431 11112222 233556666777764 3566667
Q ss_pred eCCCCCHHHHHHHHHcCCCeEecCC
Q 022946 178 TLGMLEKHQAIELKKAGLTAYNHNL 202 (289)
Q Consensus 178 ~~g~l~~e~l~~L~~aG~~~v~i~l 202 (289)
--|.-+.+.++.+.++|.|.+-+|-
T Consensus 208 GFGI~~~e~~~~~~~~GADGvVVGS 232 (263)
T CHL00200 208 GFGISTSEQIKQIKGWNINGIVIGS 232 (263)
T ss_pred ECCcCCHHHHHHHHhcCCCEEEECH
Confidence 7777778888888888888887764
No 298
>PLN02446 (5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase
Probab=86.40 E-value=3.4 Score=35.47 Aligned_cols=67 Identities=13% Similarity=-0.025 Sum_probs=45.6
Q ss_pred HHHHHHHHHcCCcEEEEecccCCCCCCchhHHHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHcCCCeEecCC
Q 022946 128 MQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMGMEVCCTLGMLEKHQAIELKKAGLTAYNHNL 202 (289)
Q Consensus 128 ~~~~~~~~~~g~~~i~i~~~~~~~~ge~~~~~~l~e~i~~ik~~~~~i~~~~g~l~~e~l~~L~~aG~~~v~i~l 202 (289)
++.++...+.|++.++++.-+ .|++.+. ++++++.+.++.+..-.|.- .+.++.+.++|+++|.++=
T Consensus 46 ~~~A~~~~~~Ga~~lHvVDLd---gg~~~n~----~~i~~i~~~~~~vqvGGGIR-~e~i~~~l~~Ga~rViigT 112 (262)
T PLN02446 46 AEFAEMYKRDGLTGGHVIMLG---ADDASLA----AALEALRAYPGGLQVGGGVN-SENAMSYLDAGASHVIVTS 112 (262)
T ss_pred HHHHHHHHHCCCCEEEEEECC---CCCcccH----HHHHHHHhCCCCEEEeCCcc-HHHHHHHHHcCCCEEEEch
Confidence 555566778999999987632 2445453 33333333456666667765 4999999999999998863
No 299
>KOG2550 consensus IMP dehydrogenase/GMP reductase [Nucleotide transport and metabolism]
Probab=86.33 E-value=5.3 Score=36.35 Aligned_cols=101 Identities=17% Similarity=0.178 Sum_probs=66.4
Q ss_pred HHHHHHHcCCcEEEEecccCCCCCCchhHHHHHHHHHHHHhcCceEEEeCC-CCCHHHHHHHHHcCCCeEecCCCch-HH
Q 022946 130 AAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMGMEVCCTLG-MLEKHQAIELKKAGLTAYNHNLDTS-RE 207 (289)
Q Consensus 130 ~~~~~~~~g~~~i~i~~~~~~~~ge~~~~~~l~e~i~~ik~~~~~i~~~~g-~l~~e~l~~L~~aG~~~v~i~let~-~~ 207 (289)
.++.+...|++.|++-+.. | +-.+-+++++.+|+...+..+-.| .++.+..+.|..+|+|.+.+|+-+. -=
T Consensus 255 rl~ll~~aGvdvviLDSSq----G---nS~~qiemik~iK~~yP~l~ViaGNVVT~~qa~nLI~aGaDgLrVGMGsGSiC 327 (503)
T KOG2550|consen 255 RLDLLVQAGVDVVILDSSQ----G---NSIYQLEMIKYIKETYPDLQIIAGNVVTKEQAANLIAAGADGLRVGMGSGSIC 327 (503)
T ss_pred HHHHhhhcCCcEEEEecCC----C---cchhHHHHHHHHHhhCCCceeeccceeeHHHHHHHHHccCceeEeccccCcee
Confidence 3445567899988885422 2 335678888888866544333333 4889999999999999999988664 11
Q ss_pred HHhccC--CCCCHHHHHHHHHHHHHcCCceee
Q 022946 208 FYSKII--TTRSYDERLETLKHVREAGINVCS 237 (289)
Q Consensus 208 ~~~~i~--~~~~~~~~~~~i~~~~~~Gi~v~~ 237 (289)
+-++++ .......+.+..+.++..|+++-+
T Consensus 328 iTqevma~GrpQ~TAVy~va~~A~q~gvpviA 359 (503)
T KOG2550|consen 328 ITQKVMACGRPQGTAVYKVAEFANQFGVPCIA 359 (503)
T ss_pred eeceeeeccCCcccchhhHHHHHHhcCCceee
Confidence 112121 112345677888888888887644
No 300
>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain. 4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate
Probab=85.94 E-value=11 Score=32.26 Aligned_cols=78 Identities=15% Similarity=0.241 Sum_probs=45.4
Q ss_pred CCHHHHHHHHHHHHHcCCcEEEEecccCCCCCCchhHHHHHHHHHHHHh-cC---ceEEEe--CCCCCHHHHHHHHHcCC
Q 022946 122 MTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRD-MG---MEVCCT--LGMLEKHQAIELKKAGL 195 (289)
Q Consensus 122 ~~~eei~~~~~~~~~~g~~~i~i~~~~~~~~ge~~~~~~l~e~i~~ik~-~~---~~i~~~--~g~l~~e~l~~L~~aG~ 195 (289)
.+++.+.+.++.+.+.|++.|.+.. +.|- ..-..+.++++.+++ .+ +.++.+ .|.-....+..+ ++|+
T Consensus 138 ~~~~~~~~~~~~~~~~G~d~i~l~D----T~G~-~~P~~v~~lv~~l~~~~~~~~l~~H~Hn~~GlA~AN~laAi-~aGa 211 (263)
T cd07943 138 ASPEELAEQAKLMESYGADCVYVTD----SAGA-MLPDDVRERVRALREALDPTPVGFHGHNNLGLAVANSLAAV-EAGA 211 (263)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEcC----CCCC-cCHHHHHHHHHHHHHhCCCceEEEEecCCcchHHHHHHHHH-HhCC
Confidence 4678888888888888888887743 1221 122445555555542 22 233333 454334444444 5788
Q ss_pred CeEecCCCch
Q 022946 196 TAYNHNLDTS 205 (289)
Q Consensus 196 ~~v~i~let~ 205 (289)
+.|..++.+.
T Consensus 212 ~~vd~s~~Gl 221 (263)
T cd07943 212 TRIDGSLAGL 221 (263)
T ss_pred CEEEeecccc
Confidence 8888877665
No 301
>PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4.1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A ....
Probab=85.65 E-value=3.7 Score=33.66 Aligned_cols=68 Identities=18% Similarity=0.116 Sum_probs=42.7
Q ss_pred CCHHHHHHHHHHHHHcCCcEEEEecccCCCCCCchhHHHHHHHHHHHHhcCceEEEeCC-CCCHHHHHHHHHcCCCeEe
Q 022946 122 MTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMGMEVCCTLG-MLEKHQAIELKKAGLTAYN 199 (289)
Q Consensus 122 ~~~eei~~~~~~~~~~g~~~i~i~~~~~~~~ge~~~~~~l~e~i~~ik~~~~~i~~~~g-~l~~e~l~~L~~aG~~~v~ 199 (289)
.+.++..+.++.+.+.|++.+.++-.. | ...+.++.+++..-++.+-.| .++.+.++...++|.+.+.
T Consensus 17 ~~~~~a~~~~~al~~gGi~~iEiT~~t------~----~a~~~I~~l~~~~p~~~vGAGTV~~~e~a~~a~~aGA~Fiv 85 (196)
T PF01081_consen 17 DDPEDAVPIAEALIEGGIRAIEITLRT------P----NALEAIEALRKEFPDLLVGAGTVLTAEQAEAAIAAGAQFIV 85 (196)
T ss_dssp SSGGGHHHHHHHHHHTT--EEEEETTS------T----THHHHHHHHHHHHTTSEEEEES--SHHHHHHHHHHT-SEEE
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEecCC------c----cHHHHHHHHHHHCCCCeeEEEeccCHHHHHHHHHcCCCEEE
Confidence 467888999999999999988876411 2 234455555532223444444 4899999999999997654
No 302
>PRK13396 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=85.49 E-value=23 Score=31.91 Aligned_cols=106 Identities=15% Similarity=0.241 Sum_probs=71.9
Q ss_pred CHHHHHHHHHHHHHcCCcEEEEecccCCCCCCc----hhHHHHHHHHHHHH-hcCceEEEeCCCCCHHHHHHHHHcCCCe
Q 022946 123 TKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRK----TNFNQILEYVKDIR-DMGMEVCCTLGMLEKHQAIELKKAGLTA 197 (289)
Q Consensus 123 ~~eei~~~~~~~~~~g~~~i~i~~~~~~~~ge~----~~~~~l~e~i~~ik-~~~~~i~~~~g~l~~e~l~~L~~aG~~~ 197 (289)
+.+++++.++.+++.|++-+ ..|.+. +--.| ..-+.-++++++++ +.|+.+.++. .+.+.++.+.+. +|.
T Consensus 113 s~eq~l~~A~~lk~~g~~~~-r~g~~k-pRtsp~sf~G~g~~gl~~L~~~~~e~Gl~~~tev--~d~~~v~~~~~~-~d~ 187 (352)
T PRK13396 113 NEEMIVETAKRVKAAGAKFL-RGGAYK-PRTSPYAFQGHGESALELLAAAREATGLGIITEV--MDAADLEKIAEV-ADV 187 (352)
T ss_pred CHHHHHHHHHHHHHcCCCEE-Eeeeec-CCCCCcccCCchHHHHHHHHHHHHHcCCcEEEee--CCHHHHHHHHhh-CCe
Confidence 67899999999999887644 333222 11111 12256667777766 7799887654 678889999888 899
Q ss_pred EecCCCc-h-HHHHhccCC---------C--CCHHHHHHHHHHHHHcCC
Q 022946 198 YNHNLDT-S-REFYSKIIT---------T--RSYDERLETLKHVREAGI 233 (289)
Q Consensus 198 v~i~let-~-~~~~~~i~~---------~--~~~~~~~~~i~~~~~~Gi 233 (289)
+.++--. . -.+++.+.+ + .+.++|+.+++.+...|-
T Consensus 188 lqIga~~~~n~~LL~~va~t~kPVllk~G~~~t~ee~~~A~e~i~~~Gn 236 (352)
T PRK13396 188 IQVGARNMQNFSLLKKVGAQDKPVLLKRGMAATIDEWLMAAEYILAAGN 236 (352)
T ss_pred EEECcccccCHHHHHHHHccCCeEEEeCCCCCCHHHHHHHHHHHHHcCC
Confidence 9986433 3 445555432 1 268999999999988876
No 303
>TIGR03572 WbuZ glycosyl amidation-associated protein WbuZ. This clade of sequences is highly similar to the HisF protein, but generally represents the second HisF homolog in the genome where the other is an authentic HisF observed in the context of a complete histidine biosynthesis operon. The similarity between these WbuZ sequences and true HisFs is such that often the closest match by BLAST of a WbuZ is a HisF. Only by making a multiple sequence alignment is the homology relationship among the WbuZ sequences made apparent. WbuZ genes are invariably observed in the presence of a homolog of the HisH protein (designated WbuY) and a proposed N-acetyl sugar amidotransferase designated in WbuX in E. coli, IfnA in P. aeriginosa and PseA in C. jejuni. Similarly, this trio of genes is invariably found in the context of saccharide biosynthesis loci. It has been shown that the WbuYZ homologs are not essential components of the activity expressed by WbuX, leading to the proposal that these to pr
Probab=85.36 E-value=5.7 Score=33.33 Aligned_cols=71 Identities=20% Similarity=0.204 Sum_probs=48.4
Q ss_pred HHHHHHHHHHcCCcEEEEecccCCCCCCchhHHHHHHHHHHHH-hcCceEEEeCCCCCHHHHHH-HHHcCCCeEecC
Q 022946 127 VMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIR-DMGMEVCCTLGMLEKHQAIE-LKKAGLTAYNHN 201 (289)
Q Consensus 127 i~~~~~~~~~~g~~~i~i~~~~~~~~ge~~~~~~l~e~i~~ik-~~~~~i~~~~g~l~~e~l~~-L~~aG~~~v~i~ 201 (289)
.++.++.+.+.|++.+++.+-...-..+.. -++++++++ ..++++..+.|..+.+.+.. +++.|++.|.++
T Consensus 155 ~~~~~~~~~~~G~d~i~i~~i~~~g~~~g~----~~~~~~~i~~~~~ipvia~GGi~s~~di~~~l~~~gadgV~vg 227 (232)
T TIGR03572 155 PVEWAREAEQLGAGEILLNSIDRDGTMKGY----DLELIKTVSDAVSIPVIALGGAGSLDDLVEVALEAGASAVAAA 227 (232)
T ss_pred HHHHHHHHHHcCCCEEEEeCCCccCCcCCC----CHHHHHHHHhhCCCCEEEECCCCCHHHHHHHHHHcCCCEEEEe
Confidence 355666777899999988762211111111 245555555 34788888888888888888 999999998875
No 304
>COG2089 SpsE Sialic acid synthase [Cell envelope biogenesis, outer membrane]
Probab=85.32 E-value=26 Score=31.04 Aligned_cols=110 Identities=15% Similarity=0.108 Sum_probs=66.0
Q ss_pred CHHHHHHHHHHHHHcCCcEEEEecc----------cCCCCC-------C---------chhHHHHHHHHHHHHhcCceEE
Q 022946 123 TKDAVMQAAQKAKEAGSTRFCMGAA----------WRDTIG-------R---------KTNFNQILEYVKDIRDMGMEVC 176 (289)
Q Consensus 123 ~~eei~~~~~~~~~~g~~~i~i~~~----------~~~~~g-------e---------~~~~~~l~e~i~~ik~~~~~i~ 176 (289)
+.|...+.++.+++.|++.|-|+.. ...+++ . ...+++..++.+..++.|+.+.
T Consensus 28 ~le~A~~lIdaAk~aGADavKfQt~~~~d~~t~~~~~~~~~i~~~~~~~slyel~e~~~~p~e~~~~Lke~a~~~Gi~~~ 107 (347)
T COG2089 28 DLERAKELIDAAKEAGADAVKFQTFYTPDIMTLESKNVPFKIKTLWDKVSLYELYEEAETPLEWHAQLKEYARKRGIIFF 107 (347)
T ss_pred cHHHHHHHHHHHHHcCcceeeeecccccccccccccCCccccccccccccHHHHHHHhcCCHHHHHHHHHHHHHcCeEEE
Confidence 6677788888888999988877751 000110 0 0123444455555556677766
Q ss_pred EeCCCCCHHHHHHHHHcCCCeEec-CCCch-HHHHhccCCC----------CCHHHHHHHHHHHHHcCCc
Q 022946 177 CTLGMLEKHQAIELKKAGLTAYNH-NLDTS-REFYSKIITT----------RSYDERLETLKHVREAGIN 234 (289)
Q Consensus 177 ~~~g~l~~e~l~~L~~aG~~~v~i-~let~-~~~~~~i~~~----------~~~~~~~~~i~~~~~~Gi~ 234 (289)
+++ ++...++.|...++..+-+ |.|.. ..+.+.+... .+.+++.++++.+++.|.+
T Consensus 108 SSP--fd~~svd~l~~~~~~ayKIaS~E~~~~plik~iA~~~kPiIlSTGma~~~ei~~av~~~r~~g~~ 175 (347)
T COG2089 108 SSP--FDLTAVDLLESLNPPAYKIASGEINDLPLIKYIAKKGKPIILSTGMATIEEIEEAVAILRENGNP 175 (347)
T ss_pred ecC--CCHHHHHHHHhcCCCeEEecCccccChHHHHHHHhcCCCEEEEcccccHHHHHHHHHHHHhcCCC
Confidence 655 6788888888888888876 55554 4444443321 1345566666666665554
No 305
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=85.32 E-value=16 Score=34.58 Aligned_cols=118 Identities=15% Similarity=0.228 Sum_probs=72.0
Q ss_pred HHHHHHHHHHHHHcCCcEEEEecccCCCCCCchhHHHHHHHHHHHHhc--CceEEEeCCCCCHHHHHHHHHcCCCeEecC
Q 022946 124 KDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDM--GMEVCCTLGMLEKHQAIELKKAGLTAYNHN 201 (289)
Q Consensus 124 ~eei~~~~~~~~~~g~~~i~i~~~~~~~~ge~~~~~~l~e~i~~ik~~--~~~i~~~~g~l~~e~l~~L~~aG~~~v~i~ 201 (289)
++. .+.++.+.+.|++.|++.... |.. ...++.++.+++. ++.+.. ....+.+.++.+.++|+|.|.++
T Consensus 240 ~~~-~~~~~~l~~ag~d~i~id~a~----G~s---~~~~~~i~~ik~~~~~~~v~a-G~V~t~~~a~~~~~aGad~I~vg 310 (495)
T PTZ00314 240 PED-IERAAALIEAGVDVLVVDSSQ----GNS---IYQIDMIKKLKSNYPHVDIIA-GNVVTADQAKNLIDAGADGLRIG 310 (495)
T ss_pred HHH-HHHHHHHHHCCCCEEEEecCC----CCc---hHHHHHHHHHHhhCCCceEEE-CCcCCHHHHHHHHHcCCCEEEEC
Confidence 344 778888889999998885421 211 3346778888854 344433 23578999999999999999876
Q ss_pred CCch-HHHHhcc-CCC-CCHHHHHHHHHHHHHcCCceeecEEe--ecCCCHHHHHHHHH
Q 022946 202 LDTS-REFYSKI-ITT-RSYDERLETLKHVREAGINVCSGGII--GLGEAEEDRVGLLH 255 (289)
Q Consensus 202 let~-~~~~~~i-~~~-~~~~~~~~~i~~~~~~Gi~v~~~~i~--Glget~ed~~~~l~ 255 (289)
+-.. -..-+.. .-+ ..+..+.+..+.+++.|+.+ |. |+ -+..|+...+.
T Consensus 311 ~g~Gs~~~t~~~~~~g~p~~~ai~~~~~~~~~~~v~v----IadGGi-~~~~di~kAla 364 (495)
T PTZ00314 311 MGSGSICITQEVCAVGRPQASAVYHVARYARERGVPC----IADGGI-KNSGDICKALA 364 (495)
T ss_pred CcCCcccccchhccCCCChHHHHHHHHHHHhhcCCeE----EecCCC-CCHHHHHHHHH
Confidence 5432 1110001 111 23556667777778888664 44 32 35566665554
No 306
>PF01729 QRPTase_C: Quinolinate phosphoribosyl transferase, C-terminal domain; InterPro: IPR002638 Quinolinate phosphoribosyl transferase (QPRTase) or nicotinate-nucleotide pyrophosphorylase 2.4.2.19 from EC is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to give rise to nicotinic acid mononucleotide (NaMN), pyrophosphate and carbon dioxide [, ]. Unlike IPR004393 from INTERPRO, this domain also includes the molybdenum transport system protein ModD.; GO: 0004514 nicotinate-nucleotide diphosphorylase (carboxylating) activity, 0009435 NAD biosynthetic process; PDB: 3C2O_A 3C2F_A 3C2E_A 3C2R_A 3C2V_A 1QPN_E 1QPO_A 1QPQ_F 1QPR_E 2I14_D ....
Probab=85.11 E-value=6 Score=31.65 Aligned_cols=66 Identities=17% Similarity=0.283 Sum_probs=41.2
Q ss_pred CHHHHHHHHHHHHHcCCcEEEEecccCCCCCCchhHHHHHHHHHHHHhc--CceEEEeCCCCCHHHHHHHHHcCCCeEec
Q 022946 123 TKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDM--GMEVCCTLGMLEKHQAIELKKAGLTAYNH 200 (289)
Q Consensus 123 ~~eei~~~~~~~~~~g~~~i~i~~~~~~~~ge~~~~~~l~e~i~~ik~~--~~~i~~~~g~l~~e~l~~L~~aG~~~v~i 200 (289)
+.+|+. ++.+.|++.|-+-. + .| +.+.++++.++.. .+.+..+.| ++.+.+.++.+.|+|.+++
T Consensus 89 ~~ee~~----ea~~~g~d~I~lD~----~--~~---~~~~~~v~~l~~~~~~v~ie~SGG-I~~~ni~~ya~~gvD~isv 154 (169)
T PF01729_consen 89 NLEEAE----EALEAGADIIMLDN----M--SP---EDLKEAVEELRELNPRVKIEASGG-ITLENIAEYAKTGVDVISV 154 (169)
T ss_dssp SHHHHH----HHHHTT-SEEEEES-------CH---HHHHHHHHHHHHHTTTSEEEEESS-SSTTTHHHHHHTT-SEEEE
T ss_pred CHHHHH----HHHHhCCCEEEecC----c--CH---HHHHHHHHHHhhcCCcEEEEEECC-CCHHHHHHHHhcCCCEEEc
Confidence 345544 44557888775522 1 13 5566666655533 355666655 7889999999999999988
Q ss_pred CC
Q 022946 201 NL 202 (289)
Q Consensus 201 ~l 202 (289)
|-
T Consensus 155 g~ 156 (169)
T PF01729_consen 155 GS 156 (169)
T ss_dssp CH
T ss_pred Ch
Confidence 63
No 307
>PRK10812 putative DNAse; Provisional
Probab=85.10 E-value=1.2 Score=38.44 Aligned_cols=49 Identities=12% Similarity=0.076 Sum_probs=41.8
Q ss_pred CCcccc-ccccccccccchHHHHHHHHHhcCCCCCCCHHHHHHhhCCChHHHH
Q 022946 19 SKKFLA-LHSSCSCYSASAAAIEAERTIREGPRHDWSKDDIKSIYDSPVLDLL 70 (289)
Q Consensus 19 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~ee~~~l~~~~~~~l~ 70 (289)
-+||++ .|.++.+|.|.++..+++.+++ -.+++.+|+..++..+...++
T Consensus 205 D~P~~~p~~~~g~~n~P~~i~~v~~~ia~---l~g~~~eei~~~~~~N~~~lf 254 (265)
T PRK10812 205 DSPYLAPVPHRGKENQPAMVRDVAEYMAV---LKGVSVEELAQVTTDNFARLF 254 (265)
T ss_pred CCCCCCCcCCCCCCCCcHHHHHHHHHHHH---HhCCCHHHHHHHHHHHHHHHH
Confidence 379998 7899999999999999999998 789999999988766655554
No 308
>PRK11572 copper homeostasis protein CutC; Provisional
Probab=84.97 E-value=23 Score=30.17 Aligned_cols=115 Identities=10% Similarity=0.114 Sum_probs=71.1
Q ss_pred CHHHHHHHHHHHHHcCCcEEEEecccCCCCCCchhHHHHHHHHHHHHhcCceEEEeCCC-C-CHHHHHHHHHcCCCeEec
Q 022946 123 TKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMGMEVCCTLGM-L-EKHQAIELKKAGLTAYNH 200 (289)
Q Consensus 123 ~~eei~~~~~~~~~~g~~~i~i~~~~~~~~ge~~~~~~l~e~i~~ik~~~~~i~~~~g~-l-~~e~l~~L~~aG~~~v~i 200 (289)
..+.+.+.++.+++.|++-|+|+.-. .-| ....+.+.++++..+...+.++.-... . ..+.++.|.+.|+++|.-
T Consensus 71 E~~~M~~di~~~~~~GadGvV~G~L~--~dg-~vD~~~~~~Li~~a~~~~vTFHRAfD~~~d~~~al~~l~~lG~~rILT 147 (248)
T PRK11572 71 EFAAMLEDIATVRELGFPGLVTGVLD--VDG-HVDMPRMRKIMAAAGPLAVTFHRAFDMCANPLNALKQLADLGVARILT 147 (248)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeeEC--CCC-CcCHHHHHHHHHHhcCCceEEechhhccCCHHHHHHHHHHcCCCEEEC
Confidence 45677788888899999999886522 112 346677777777665444433222111 2 244589999999999975
Q ss_pred CCCchHHHHhccCCCCCHHHHHHHHHHHHH-cCCceeecEEeecCCCHHHHHHHH
Q 022946 201 NLDTSREFYSKIITTRSYDERLETLKHVRE-AGINVCSGGIIGLGEAEEDRVGLL 254 (289)
Q Consensus 201 ~let~~~~~~~i~~~~~~~~~~~~i~~~~~-~Gi~v~~~~i~Glget~ed~~~~l 254 (289)
+=.. .+..+-++.++.+.+ ++ .. .+|.|=|-+.+.+.+..
T Consensus 148 SGg~-----------~~a~~g~~~L~~lv~~a~-~~--~Im~GgGV~~~Nv~~l~ 188 (248)
T PRK11572 148 SGQQ-----------QDAEQGLSLIMELIAASD-GP--IIMAGAGVRLSNLHKFL 188 (248)
T ss_pred CCCC-----------CCHHHHHHHHHHHHHhcC-CC--EEEeCCCCCHHHHHHHH
Confidence 4211 234444555555544 33 21 17888888888877753
No 309
>PF04131 NanE: Putative N-acetylmannosamine-6-phosphate epimerase; InterPro: IPR007260 This family represents a putative ManNAc-6-P-to-GlcNAc-6P epimerase in the N-acetylmannosamine (ManNAc) utilization pathway found mainly in pathogenic bacteria for the reaction: N-acyl-D-glucosamine 6-phosphate = N-acyl-D-mannosamine 6-phosphate It is probably encoded by the yhcJ gene [].; GO: 0047465 N-acylglucosamine-6-phosphate 2-epimerase activity, 0006051 N-acetylmannosamine metabolic process; PDB: 1Y0E_B 3IGS_A 1YXY_A 3Q58_B.
Probab=84.85 E-value=16 Score=29.67 Aligned_cols=109 Identities=17% Similarity=0.185 Sum_probs=63.6
Q ss_pred HHHHHHHHcCCcEEEEecccCCCCCCchhHHHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHcCCCeEecCCCch-HH
Q 022946 129 QAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMGMEVCCTLGMLEKHQAIELKKAGLTAYNHNLDTS-RE 207 (289)
Q Consensus 129 ~~~~~~~~~g~~~i~i~~~~~~~~ge~~~~~~l~e~i~~ik~~~~~i~~~~g~l~~e~l~~L~~aG~~~v~i~let~-~~ 207 (289)
++++.+.+.|.+-|.+-+- ..+.. ..+.++++++++.+.-+... .-+.|....-.++|+|.|.--+-++ ++
T Consensus 55 ~ev~~l~~aGadIIAlDaT-----~R~Rp-~~l~~li~~i~~~~~l~MAD--ist~ee~~~A~~~G~D~I~TTLsGYT~~ 126 (192)
T PF04131_consen 55 KEVDALAEAGADIIALDAT-----DRPRP-ETLEELIREIKEKYQLVMAD--ISTLEEAINAAELGFDIIGTTLSGYTPY 126 (192)
T ss_dssp HHHHHHHHCT-SEEEEE-S-----SSS-S-S-HHHHHHHHHHCTSEEEEE---SSHHHHHHHHHTT-SEEE-TTTTSSTT
T ss_pred HHHHHHHHcCCCEEEEecC-----CCCCC-cCHHHHHHHHHHhCcEEeee--cCCHHHHHHHHHcCCCEEEcccccCCCC
Confidence 3444667789998888652 22333 77888888888666434333 3567888888999999999888776 54
Q ss_pred HHhccCCCCCHHHHHHHHHHHHHcCCceeecEEeecCCCHHHHHHHHH
Q 022946 208 FYSKIITTRSYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLH 255 (289)
Q Consensus 208 ~~~~i~~~~~~~~~~~~i~~~~~~Gi~v~~~~i~Glget~ed~~~~l~ 255 (289)
.-. ...-++.++.+.+.+.++ +.=|--.|+++..+.++
T Consensus 127 t~~-------~~pD~~lv~~l~~~~~pv---IaEGri~tpe~a~~al~ 164 (192)
T PF04131_consen 127 TKG-------DGPDFELVRELVQADVPV---IAEGRIHTPEQAAKALE 164 (192)
T ss_dssp STT-------SSHHHHHHHHHHHTTSEE---EEESS--SHHHHHHHHH
T ss_pred CCC-------CCCCHHHHHHHHhCCCcE---eecCCCCCHHHHHHHHh
Confidence 433 122345566666666553 12244567777666654
No 310
>TIGR00007 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase. Examples of this enzyme in Actinobacteria have been found to be bifunctional, also possessing phosphoribosylanthranilate isomerase activity ; the trusted cutoff here has now been raised to 275.0 to exclude the bifunctional group, now represented by model TIGR01919. HisA from Lactococcus lactis was reported to be inactive (MEDLINE:93322317).
Probab=84.80 E-value=10 Score=31.63 Aligned_cols=69 Identities=22% Similarity=0.229 Sum_probs=45.2
Q ss_pred HHHHHHHHcCCcEEEEecccCCCCCCchhHHHHHHHHHHHH-hcCceEEEeCCCCCHHHHHHHHHcCCCeEecC
Q 022946 129 QAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIR-DMGMEVCCTLGMLEKHQAIELKKAGLTAYNHN 201 (289)
Q Consensus 129 ~~~~~~~~~g~~~i~i~~~~~~~~ge~~~~~~l~e~i~~ik-~~~~~i~~~~g~l~~e~l~~L~~aG~~~v~i~ 201 (289)
+.++.+.+.|++.+++.+-...-...... +++++.+. ...+.+....|..+.+.++.+++.|++.+.++
T Consensus 149 ~~~~~~~~~g~~~ii~~~~~~~g~~~g~~----~~~i~~i~~~~~ipvia~GGi~~~~di~~~~~~Gadgv~ig 218 (230)
T TIGR00007 149 ELAKRLEELGLEGIIYTDISRDGTLSGPN----FELTKELVKAVNVPVIASGGVSSIDDLIALKKLGVYGVIVG 218 (230)
T ss_pred HHHHHHHhCCCCEEEEEeecCCCCcCCCC----HHHHHHHHHhCCCCEEEeCCCCCHHHHHHHHHCCCCEEEEe
Confidence 34455668899988775432211111112 34444444 34678888889999999999999999998875
No 311
>TIGR01919 hisA-trpF 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase/N-(5'phosphoribosyl)anthranilate isomerase. This model represents a bifunctional protein posessing both hisA (1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase) and trpF (N-(5'phosphoribosyl)anthranilate isomerase) activities. Thus, it is involved in both the histidine and tryptophan biosynthetic pathways. Enzymes with this property have been described only in the Actinobacteria (High-GC gram-positive). The enzyme is closely related to the monofunctional HisA proteins (TIGR00007) and in Actinobacteria, the classical monofunctional TrpF is generally absent.
Probab=84.52 E-value=12 Score=31.89 Aligned_cols=76 Identities=14% Similarity=0.005 Sum_probs=51.3
Q ss_pred CHHHHHHHHHHHHHcCCcEEEEecccCCCCCCchhHHHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHcCCCeEecCC
Q 022946 123 TKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMGMEVCCTLGMLEKHQAIELKKAGLTAYNHNL 202 (289)
Q Consensus 123 ~~eei~~~~~~~~~~g~~~i~i~~~~~~~~ge~~~~~~l~e~i~~ik~~~~~i~~~~g~l~~e~l~~L~~aG~~~v~i~l 202 (289)
++.+ .++...+.|.+.+++..-+... |.+.+.+.+.++.+ ...+++....|.-+.+.++.+.++|++++.++-
T Consensus 32 ~p~~---~a~~~~~~g~~~lhivDLd~a~-g~~~n~~~i~~i~~---~~~~~v~vgGGIrs~e~~~~~l~~Ga~~vvigT 104 (243)
T TIGR01919 32 SLES---AAKWWEQGGAEWIHLVDLDAAF-GGGNNEMMLEEVVK---LLVVVEELSGGRRDDSSLRAALTGGRARVNGGT 104 (243)
T ss_pred CHHH---HHHHHHhCCCeEEEEEECCCCC-CCcchHHHHHHHHH---HCCCCEEEcCCCCCHHHHHHHHHcCCCEEEECc
Confidence 5644 3445567888888886533222 44445443333333 345777788899999999999999999998876
Q ss_pred Cch
Q 022946 203 DTS 205 (289)
Q Consensus 203 et~ 205 (289)
.+.
T Consensus 105 ~a~ 107 (243)
T TIGR01919 105 AAL 107 (243)
T ss_pred hhh
Confidence 554
No 312
>TIGR01163 rpe ribulose-phosphate 3-epimerase. This family consists of Ribulose-phosphate 3-epimerase, also known as pentose-5-phosphate 3-epimerase (PPE). PPE converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. It has been found in a wide range of bacteria, archebacteria, fungi and plants.
Probab=84.46 E-value=21 Score=29.17 Aligned_cols=79 Identities=10% Similarity=0.064 Sum_probs=46.4
Q ss_pred CCHHHHHHHHHHHHHcCCcEEEEecccCCCCCCchhHHHHHHHHHHHHhc-CceEEEeCC-CCCHHHHHHHHHcCCCeEe
Q 022946 122 MTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDM-GMEVCCTLG-MLEKHQAIELKKAGLTAYN 199 (289)
Q Consensus 122 ~~~eei~~~~~~~~~~g~~~i~i~~~~~~~~ge~~~~~~l~e~i~~ik~~-~~~i~~~~g-~l~~e~l~~L~~aG~~~v~ 199 (289)
.+.+.+.+.++.+.+.|++.+.+.-.+..... ....-.+.++.+++. ...+.+..- .-..+.++.++++|++.+.
T Consensus 8 ~~~~~~~~~~~~~~~~g~d~i~~~~~Dg~~~~---~~~~~~~~v~~i~~~~~~~v~v~lm~~~~~~~~~~~~~~gadgv~ 84 (210)
T TIGR01163 8 ADFARLGEEVKAVEEAGADWIHVDVMDGHFVP---NLTFGPPVLEALRKYTDLPIDVHLMVENPDRYIEDFAEAGADIIT 84 (210)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEcCCCCCCCC---CcccCHHHHHHHHhcCCCcEEEEeeeCCHHHHHHHHHHcCCCEEE
Confidence 35678888899999999999988521111111 112344555555532 333211111 1135668999999999987
Q ss_pred cCCC
Q 022946 200 HNLD 203 (289)
Q Consensus 200 i~le 203 (289)
+..+
T Consensus 85 vh~~ 88 (210)
T TIGR01163 85 VHPE 88 (210)
T ss_pred EccC
Confidence 6544
No 313
>TIGR00676 fadh2 5,10-methylenetetrahydrofolate reductase, prokaryotic form. This protein is an FAD-containing flavoprotein.
Probab=84.43 E-value=26 Score=30.28 Aligned_cols=50 Identities=18% Similarity=0.122 Sum_probs=33.8
Q ss_pred CCHHHHHHHHHHHHHcCCcEEEEecccCCCCCC---chhHHHHHHHHHHHHhc
Q 022946 122 MTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGR---KTNFNQILEYVKDIRDM 171 (289)
Q Consensus 122 ~~~eei~~~~~~~~~~g~~~i~i~~~~~~~~ge---~~~~~~l~e~i~~ik~~ 171 (289)
++..++...+..+.+.|++.+...+|+....+. +..++.-.++++.+++.
T Consensus 70 ~n~~~l~~~L~~~~~~Gi~nvL~l~GD~~~~~~~~~~~~f~~a~~Li~~i~~~ 122 (272)
T TIGR00676 70 ATREEIREILREYRELGIRHILALRGDPPKGEGTPTPGGFNYASELVEFIRNE 122 (272)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEeCCCCCCCCCCCCCCCCCCHHHHHHHHHHh
Confidence 467888888888899999999765555443231 12345677777777643
No 314
>COG2896 MoaA Molybdenum cofactor biosynthesis enzyme [Coenzyme metabolism]
Probab=84.38 E-value=29 Score=30.85 Aligned_cols=110 Identities=15% Similarity=0.225 Sum_probs=71.3
Q ss_pred CCHHHHHHHHHHHHHcCCcEEEEecccCCCCCCchhHHHHHHHHHHHHhcCce-EEEeCCCCCHHHHHHHHHcCC-CeEe
Q 022946 122 MTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMGME-VCCTLGMLEKHQAIELKKAGL-TAYN 199 (289)
Q Consensus 122 ~~~eei~~~~~~~~~~g~~~i~i~~~~~~~~ge~~~~~~l~e~i~~ik~~~~~-i~~~~g~l~~e~l~~L~~aG~-~~v~ 199 (289)
.+..+|++.+... ++..+.++..+ -.+....+.+|+.|+. +.++...++++...++-.-|. +.|-
T Consensus 74 ~dl~eIi~~l~~~---~~~~islTTNG----------~~L~~~a~~Lk~AGl~rVNVSLDsld~e~f~~IT~~~~~~~Vl 140 (322)
T COG2896 74 KDLDEIIARLARL---GIRDLSLTTNG----------VLLARRAADLKEAGLDRVNVSLDSLDPEKFRKITGRDRLDRVL 140 (322)
T ss_pred cCHHHHHHHHhhc---ccceEEEecch----------hhHHHHHHHHHHcCCcEEEeecccCCHHHHHHHhCCCcHHHHH
Confidence 4677777776644 88888887532 2355666677877876 777888888888888874332 2223
Q ss_pred cCCCch-HHHHh--c----cCCCCCHHHHHHHHHHHHHcCCceeecEEeecC
Q 022946 200 HNLDTS-REFYS--K----IITTRSYDERLETLKHVREAGINVCSGGIIGLG 244 (289)
Q Consensus 200 i~let~-~~~~~--~----i~~~~~~~~~~~~i~~~~~~Gi~v~~~~i~Glg 244 (289)
=|++.+ +.-+. + +.++-+-+++.+.++.++..|+.+...-..-+|
T Consensus 141 ~GI~~A~~~Gl~pVKlN~Vv~kgvNd~ei~~l~e~~~~~~~~lrfIE~m~~g 192 (322)
T COG2896 141 EGIDAAVEAGLTPVKLNTVLMKGVNDDEIEDLLEFAKERGAQLRFIELMPLG 192 (322)
T ss_pred HHHHHHHHcCCCceEEEEEEecCCCHHHHHHHHHHHhhcCCceEEEEEeecC
Confidence 345544 33222 1 224557899999999999999876554333333
No 315
>TIGR00736 nifR3_rel_arch TIM-barrel protein, putative. Members of this family show a distant relationship by PSI-BLAST to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. At least two closely related but well-separable families among the bacteria, the nifR3/yhdG family and the yjbN family, share a more distant relationship to this family of shorter, exclusively archaeal proteins.
Probab=84.37 E-value=24 Score=29.80 Aligned_cols=133 Identities=13% Similarity=0.081 Sum_probs=82.1
Q ss_pred HHHHHHHHHcCCcEEEEecccCCCCCCchhHHHHHHHHHHHHhcCceEEEeCCCCCHHHHHHH---HHcCCCeEecCCCc
Q 022946 128 MQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMGMEVCCTLGMLEKHQAIEL---KKAGLTAYNHNLDT 204 (289)
Q Consensus 128 ~~~~~~~~~~g~~~i~i~~~~~~~~ge~~~~~~l~e~i~~ik~~~~~i~~~~g~l~~e~l~~L---~~aG~~~v~i~let 204 (289)
.+..+.+.+.|-+++.+-. .....++.+.+..++ ....+..+.+..+.+.+.++ ...+++.|.+++-.
T Consensus 32 ~~a~~~~~~rgr~ef~~~~--------e~~~~~i~~e~~~~~-~~~~vivnv~~~~~ee~~~~a~~v~~~~d~IdiN~gC 102 (231)
T TIGR00736 32 YKASRDIEKRGRKEFSFNL--------EEFNSYIIEQIKKAE-SRALVSVNVRFVDLEEAYDVLLTIAEHADIIEINAHC 102 (231)
T ss_pred HHHHHHHHHcCCcccCcCc--------ccHHHHHHHHHHHHh-hcCCEEEEEecCCHHHHHHHHHHHhcCCCEEEEECCC
Confidence 3344556667767763211 124466677777675 33356666666555544332 23478899998888
Q ss_pred h-HHHHhccCC---CCCHHHHHHHHHHHHHcCCceeecEEeecCCCHHHHHHHHHHHhcCCCCCCeeeeccce
Q 022946 205 S-REFYSKIIT---TRSYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALL 273 (289)
Q Consensus 205 ~-~~~~~~i~~---~~~~~~~~~~i~~~~~~Gi~v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~i~~~~ 273 (289)
. +++.+.-.+ -++++.+.+.++.+++.+++|..-+-.|. +.++..+..+.+.+. +.+.+.+....
T Consensus 103 P~~~v~~~g~G~~Ll~dp~~l~~iv~av~~~~~PVsvKiR~~~--~~~~~~~~a~~l~~a--Gad~i~Vd~~~ 171 (231)
T TIGR00736 103 RQPEITEIGIGQELLKNKELLKEFLTKMKELNKPIFVKIRGNC--IPLDELIDALNLVDD--GFDGIHVDAMY 171 (231)
T ss_pred CcHHHcCCCCchhhcCCHHHHHHHHHHHHcCCCcEEEEeCCCC--CcchHHHHHHHHHHc--CCCEEEEeeCC
Confidence 7 666544333 23678888888888877777766666554 334566676777777 57888776543
No 316
>PRK12999 pyruvate carboxylase; Reviewed
Probab=84.10 E-value=44 Score=35.26 Aligned_cols=134 Identities=10% Similarity=0.021 Sum_probs=73.2
Q ss_pred CCCHHHHHHHHHHHHHc--CCcEEEEecccCCC-----CCCchhHHHHHHHHHHHHhcCceEEEe----------CCCCC
Q 022946 121 LMTKDAVMQAAQKAKEA--GSTRFCMGAAWRDT-----IGRKTNFNQILEYVKDIRDMGMEVCCT----------LGMLE 183 (289)
Q Consensus 121 ~~~~eei~~~~~~~~~~--g~~~i~i~~~~~~~-----~ge~~~~~~l~e~i~~ik~~~~~i~~~----------~g~l~ 183 (289)
.++.++.+..+..+.+. |+..+-+.||.... ..+ ..++++..+-+.+....+..... ++...
T Consensus 551 r~~~~d~l~ia~~l~~~~~g~~siE~~ggatfd~~~r~l~e-~p~erl~~~r~~~~~~~~q~l~Rg~n~vgy~~yp~~v~ 629 (1146)
T PRK12999 551 RVRTKDLLRIAPATARLLPNLFSLEMWGGATFDVAYRFLKE-DPWERLAELREAAPNVLFQMLLRGSNAVGYTNYPDNVV 629 (1146)
T ss_pred cCCHHHHHHHHHHHHHHhCCCCEEEeeCCcchhhhccccCC-CHHHHHHHHHHhCCCCeEEEEecccccccccCCCchHH
Confidence 37889999999999998 99998876542221 111 23333333333333222222221 11233
Q ss_pred HHHHHHHHHcCCCeEecCCCchHHHHhccCCCCCHHHHHHHHHHHHHcCCceeecEEee------c--CCCHHHHHHHHH
Q 022946 184 KHQAIELKKAGLTAYNHNLDTSREFYSKIITTRSYDERLETLKHVREAGINVCSGGIIG------L--GEAEEDRVGLLH 255 (289)
Q Consensus 184 ~e~l~~L~~aG~~~v~i~let~~~~~~~i~~~~~~~~~~~~i~~~~~~Gi~v~~~~i~G------l--get~ed~~~~l~ 255 (289)
.+.++...++|++.+.+.. +. ...+....+++.+++.|......+-+= . ..+.+-+.+.++
T Consensus 630 ~~~i~~a~~~Gid~~rifd-~l----------nd~~~~~~~i~~vk~~g~~~~~~i~ytg~~~d~~~~~~~~~~~~~~a~ 698 (1146)
T PRK12999 630 RAFVREAAAAGIDVFRIFD-SL----------NWVENMRVAIDAVRETGKIAEAAICYTGDILDPARAKYDLDYYVDLAK 698 (1146)
T ss_pred HHHHHHHHHcCCCEEEEec-cC----------ChHHHHHHHHHHHHHcCCeEEEEEEEEecCCCCCCCCCCHHHHHHHHH
Confidence 4557778888999887653 21 224456666777777775322222111 1 135666666666
Q ss_pred HHhcCCCCCCeee
Q 022946 256 TLATLPTHPESVP 268 (289)
Q Consensus 256 ~l~~l~~~~~~v~ 268 (289)
.+.++ +.+.+.
T Consensus 699 ~l~~~--Ga~~i~ 709 (1146)
T PRK12999 699 ELEKA--GAHILA 709 (1146)
T ss_pred HHHHc--CCCEEE
Confidence 67666 345443
No 317
>PF02679 ComA: (2R)-phospho-3-sulfolactate synthase (ComA); InterPro: IPR003830 Methanogenic archaea produce methane via the anaerobic reduction of acetate or single carbon compounds []. Coenzyme M (CoM; 2-mercaptoethanesulphonic acid) serves as the terminal methyl carrier for this process. Previously thought to be unique to methanogenic archaea, CoM has also been found in methylotrophic bacteria. Biosynthesis of CoM begins with the Michael addition of sulphite to phosphoenolpyruvate, forming 2-phospho-3-sulpholactate (PSL). This reaction is catalyzed by members of this family, PSL synthase (ComA) []. Subsequently, PSL is dephosphorylated by phosphosulpholactate phosphatase (ComB) to form 3-sulpholactate [], which is then converted to 3-sulphopyruvate by L-sulpholactate dehydrogenase (ComC; 1.1.1.272 from EC) []. Sulphopyruvate decarboxylase (ComDE; 4.1.1.79 from EC) converts 3-sulphopyruvate to sulphoacetaldehyde []. Reductive thiolation of sulphoacetaldehyde is the final step.; GO: 0019295 coenzyme M biosynthetic process; PDB: 1U83_A 1QWG_A.
Probab=84.00 E-value=19 Score=30.56 Aligned_cols=19 Identities=21% Similarity=0.116 Sum_probs=9.1
Q ss_pred HHHHHHHHHcCCCeEecCC
Q 022946 184 KHQAIELKKAGLTAYNHNL 202 (289)
Q Consensus 184 ~e~l~~L~~aG~~~v~i~l 202 (289)
++.++..++.|++.|.+|-
T Consensus 87 ~~yl~~~k~lGf~~IEiSd 105 (244)
T PF02679_consen 87 DEYLEECKELGFDAIEISD 105 (244)
T ss_dssp HHHHHHHHHCT-SEEEE--
T ss_pred HHHHHHHHHcCCCEEEecC
Confidence 4445555666666655543
No 318
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=83.37 E-value=23 Score=30.48 Aligned_cols=61 Identities=16% Similarity=0.197 Sum_probs=37.9
Q ss_pred eEEEeCCC----CCHHHHHHHHHcCCCeEecCCCch----------HHHHhccCCCCCHHHHHHHHHHHHHcCCc
Q 022946 174 EVCCTLGM----LEKHQAIELKKAGLTAYNHNLDTS----------REFYSKIITTRSYDERLETLKHVREAGIN 234 (289)
Q Consensus 174 ~i~~~~g~----l~~e~l~~L~~aG~~~v~i~let~----------~~~~~~i~~~~~~~~~~~~i~~~~~~Gi~ 234 (289)
-...+.|. .+.+.++.|.++|+|.+.+|+-.+ ....+.+..+.+.++.++.++.+++.+..
T Consensus 20 i~yit~GdP~~e~s~e~i~~L~~~GaD~iELGvPfSDPvADGP~Iq~A~~rAL~~g~t~~~~lel~~~~r~~~~~ 94 (265)
T COG0159 20 IPYVTAGDPDLETSLEIIKTLVEAGADILELGVPFSDPVADGPTIQAAHLRALAAGVTLEDTLELVEEIRAKGVK 94 (265)
T ss_pred EEEEeCCCCCHHHHHHHHHHHHhCCCCEEEecCCCCCcCccCHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCC
Confidence 34455555 234445666677888887776442 12344455567788888888888876554
No 319
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=83.36 E-value=29 Score=29.93 Aligned_cols=126 Identities=13% Similarity=0.162 Sum_probs=76.4
Q ss_pred CCHHHHHHHHHHHHHcCCc-EEEEecccCCCCCCchhHHHHHHHHHHHHhcCceEEEeCCC---CCHHHHHHHHHcCCCe
Q 022946 122 MTKDAVMQAAQKAKEAGST-RFCMGAAWRDTIGRKTNFNQILEYVKDIRDMGMEVCCTLGM---LEKHQAIELKKAGLTA 197 (289)
Q Consensus 122 ~~~eei~~~~~~~~~~g~~-~i~i~~~~~~~~ge~~~~~~l~e~i~~ik~~~~~i~~~~g~---l~~e~l~~L~~aG~~~ 197 (289)
++.+.+++.++.+.+.+.+ -+.+.+ +..|.+...+.+.++.+++.|+.-..-... ...+..+..++.|++.
T Consensus 76 ~t~~~~lel~~~~r~~~~~~Pivlm~-----Y~Npi~~~Gie~F~~~~~~~GvdGlivpDLP~ee~~~~~~~~~~~gi~~ 150 (265)
T COG0159 76 VTLEDTLELVEEIRAKGVKVPIVLMT-----YYNPIFNYGIEKFLRRAKEAGVDGLLVPDLPPEESDELLKAAEKHGIDP 150 (265)
T ss_pred CCHHHHHHHHHHHHhcCCCCCEEEEE-----eccHHHHhhHHHHHHHHHHcCCCEEEeCCCChHHHHHHHHHHHHcCCcE
Confidence 6888899999888866544 233333 233555566777777788888764333332 2333456666789998
Q ss_pred Eec-CCCchHHHHhccCC---C---------------CCHHHHHHHHHHHHHc-CCceeecEEeec-CCCHHHHHHHHHH
Q 022946 198 YNH-NLDTSREFYSKIIT---T---------------RSYDERLETLKHVREA-GINVCSGGIIGL-GEAEEDRVGLLHT 256 (289)
Q Consensus 198 v~i-~let~~~~~~~i~~---~---------------~~~~~~~~~i~~~~~~-Gi~v~~~~i~Gl-get~ed~~~~l~~ 256 (289)
|.+ +..|.++..+++.. + .....+.+.++.+|+. +.++ .+|+ -.+.++..+..+.
T Consensus 151 I~lvaPtt~~~rl~~i~~~a~GFiY~vs~~GvTG~~~~~~~~~~~~v~~vr~~~~~Pv----~vGFGIs~~e~~~~v~~~ 226 (265)
T COG0159 151 IFLVAPTTPDERLKKIAEAASGFIYYVSRMGVTGARNPVSADVKELVKRVRKYTDVPV----LVGFGISSPEQAAQVAEA 226 (265)
T ss_pred EEEeCCCCCHHHHHHHHHhCCCcEEEEecccccCCCcccchhHHHHHHHHHHhcCCCe----EEecCcCCHHHHHHHHHh
Confidence 886 44444555554432 1 0123467777777774 4444 7888 5677777766665
No 320
>PRK11858 aksA trans-homoaconitate synthase; Reviewed
Probab=83.23 E-value=36 Score=31.00 Aligned_cols=78 Identities=24% Similarity=0.395 Sum_probs=44.7
Q ss_pred CCHHHHHHHHHHHHHcCCcEEEEecccCCCCCCchhHHHHHHHHHHHHh-cC--ceEEEe--CCCCCHHHHHHHHHcCCC
Q 022946 122 MTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRD-MG--MEVCCT--LGMLEKHQAIELKKAGLT 196 (289)
Q Consensus 122 ~~~eei~~~~~~~~~~g~~~i~i~~~~~~~~ge~~~~~~l~e~i~~ik~-~~--~~i~~~--~g~l~~e~l~~L~~aG~~ 196 (289)
.+++.+.+.++.+.+.|++.|.+.. +.|- ..-..+.++++.+++ .+ +.++++ .|.-....+..+ ++|++
T Consensus 142 ~~~~~l~~~~~~~~~~Ga~~I~l~D----T~G~-~~P~~v~~lv~~l~~~~~~~l~~H~Hnd~GlA~AN~laAv-~aGa~ 215 (378)
T PRK11858 142 TDLDFLIEFAKAAEEAGADRVRFCD----TVGI-LDPFTMYELVKELVEAVDIPIEVHCHNDFGMATANALAGI-EAGAK 215 (378)
T ss_pred CCHHHHHHHHHHHHhCCCCEEEEec----cCCC-CCHHHHHHHHHHHHHhcCCeEEEEecCCcCHHHHHHHHHH-HcCCC
Confidence 3678888888888888888887753 1221 122344555555442 22 333443 344444444444 57888
Q ss_pred eEecCCCch
Q 022946 197 AYNHNLDTS 205 (289)
Q Consensus 197 ~v~i~let~ 205 (289)
.|..++.+.
T Consensus 216 ~vd~tv~Gl 224 (378)
T PRK11858 216 QVHTTVNGL 224 (378)
T ss_pred EEEEeeccc
Confidence 888777664
No 321
>PRK13585 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=83.21 E-value=11 Score=31.64 Aligned_cols=71 Identities=18% Similarity=0.195 Sum_probs=45.6
Q ss_pred HHHHHHHHHcCCcEEEEecccCCCCCCchhHHHHHHHHHHHH-hcCceEEEeCCCCCHHHHHHHHHcCCCeEecCC
Q 022946 128 MQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIR-DMGMEVCCTLGMLEKHQAIELKKAGLTAYNHNL 202 (289)
Q Consensus 128 ~~~~~~~~~~g~~~i~i~~~~~~~~ge~~~~~~l~e~i~~ik-~~~~~i~~~~g~l~~e~l~~L~~aG~~~v~i~l 202 (289)
++.++.+.+.|+..+++.+-..+-......++. ++.+. ...+++....|..+.+.+..++++|++.+.++=
T Consensus 152 ~~~~~~~~~~G~~~i~~~~~~~~g~~~g~~~~~----i~~i~~~~~iPvia~GGI~~~~di~~~~~~Ga~gv~vgs 223 (241)
T PRK13585 152 VEAAKRFEELGAGSILFTNVDVEGLLEGVNTEP----VKELVDSVDIPVIASGGVTTLDDLRALKEAGAAGVVVGS 223 (241)
T ss_pred HHHHHHHHHcCCCEEEEEeecCCCCcCCCCHHH----HHHHHHhCCCCEEEeCCCCCHHHHHHHHHcCCCEEEEEH
Confidence 444445567899999886532211111123333 33333 346788888888888889999999999988753
No 322
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of
Probab=83.04 E-value=12 Score=32.43 Aligned_cols=80 Identities=15% Similarity=0.184 Sum_probs=55.4
Q ss_pred CCHHHHHHHHHHHHHcCCcEEEEecccCCC---------------CC--CchhHHHHHHHHHHHH-hc--CceEEEeCCC
Q 022946 122 MTKDAVMQAAQKAKEAGSTRFCMGAAWRDT---------------IG--RKTNFNQILEYVKDIR-DM--GMEVCCTLGM 181 (289)
Q Consensus 122 ~~~eei~~~~~~~~~~g~~~i~i~~~~~~~---------------~g--e~~~~~~l~e~i~~ik-~~--~~~i~~~~g~ 181 (289)
.+.+++.+.++.+.+.|++.+++.+..... .| .+.....-++.++.++ .. ++.+..+.|.
T Consensus 173 ~~~~~~~~~a~~l~~~Gad~i~~~~~~~~~~~~~~~~~~~~~~~~~g~sg~~~~~~~~~~v~~i~~~~~~~ipiia~GGI 252 (289)
T cd02810 173 FDLEDIVELAKAAERAGADGLTAINTISGRVVDLKTVGPGPKRGTGGLSGAPIRPLALRWVARLAARLQLDIPIIGVGGI 252 (289)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEEcccCccceecccCccccCCCCCccCcHHHHHHHHHHHHHHHHhcCCCCCEEEECCC
Confidence 467788888888889999988875421100 00 0111233466777776 34 6788888898
Q ss_pred CCHHHHHHHHHcCCCeEecC
Q 022946 182 LEKHQAIELKKAGLTAYNHN 201 (289)
Q Consensus 182 l~~e~l~~L~~aG~~~v~i~ 201 (289)
.+.+.+.++..+|++.|.++
T Consensus 253 ~~~~da~~~l~~GAd~V~vg 272 (289)
T cd02810 253 DSGEDVLEMLMAGASAVQVA 272 (289)
T ss_pred CCHHHHHHHHHcCccHheEc
Confidence 88899888888999988875
No 323
>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit.
Probab=83.04 E-value=17 Score=31.08 Aligned_cols=97 Identities=16% Similarity=0.144 Sum_probs=59.6
Q ss_pred HHHHHHHHHHHHcCCcEEEEecccCCCCCCchhHHHHHHHHHHHH-hcCceEEEeCCCCCHHHHHHHHHcC-CCeEecCC
Q 022946 125 DAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIR-DMGMEVCCTLGMLEKHQAIELKKAG-LTAYNHNL 202 (289)
Q Consensus 125 eei~~~~~~~~~~g~~~i~i~~~~~~~~ge~~~~~~l~e~i~~ik-~~~~~i~~~~g~l~~e~l~~L~~aG-~~~v~i~l 202 (289)
++..+.++.+.+.|++.+.+.+-...-......+ ++++.++ ..++++..+.|..+.+.+.++.+.| ++.+.++-
T Consensus 155 ~~~~~~~~~l~~~G~~~iivt~i~~~g~~~g~~~----~~~~~i~~~~~ipvia~GGi~s~~di~~~~~~g~~dgv~~g~ 230 (254)
T TIGR00735 155 LDAVEWAKEVEKLGAGEILLTSMDKDGTKSGYDL----ELTKAVSEAVKIPVIASGGAGKPEHFYEAFTKGKADAALAAS 230 (254)
T ss_pred CCHHHHHHHHHHcCCCEEEEeCcCcccCCCCCCH----HHHHHHHHhCCCCEEEeCCCCCHHHHHHHHHcCCcceeeEhH
Confidence 4445666677789999988855322111111222 3444444 3477888888999999998988887 98876653
Q ss_pred CchHHHHhccCCCCCHHHHHHHHHHHHHcCCce
Q 022946 203 DTSREFYSKIITTRSYDERLETLKHVREAGINV 235 (289)
Q Consensus 203 et~~~~~~~i~~~~~~~~~~~~i~~~~~~Gi~v 235 (289)
..|.. ..+++ +..+.+++.|+++
T Consensus 231 ----a~~~~---~~~~~---~~~~~~~~~gi~~ 253 (254)
T TIGR00735 231 ----VFHYR---EITIG---EVKEYLAERGIPV 253 (254)
T ss_pred ----HHhCC---CCCHH---HHHHHHHHCCCcc
Confidence 22221 23443 4455666778764
No 324
>COG1751 Uncharacterized conserved protein [Function unknown]
Probab=82.94 E-value=21 Score=27.96 Aligned_cols=110 Identities=25% Similarity=0.357 Sum_probs=65.8
Q ss_pred CHHHHHH-HHHHHHHcCCcEEEEecccCCCCCCchhHHHHHHHHHHHHhcCceEEEe------CC--CCCHHHHHHHHHc
Q 022946 123 TKDAVMQ-AAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMGMEVCCT------LG--MLEKHQAIELKKA 193 (289)
Q Consensus 123 ~~eei~~-~~~~~~~~g~~~i~i~~~~~~~~ge~~~~~~l~e~i~~ik~~~~~i~~~------~g--~l~~e~l~~L~~a 193 (289)
..|+.++ .++++.+.|++++++.+. .|. ....++++++. .+.+-+.+. .| .+++|.-++|++.
T Consensus 11 NT~~tle~a~erA~elgik~~vVAS~----tG~--tA~k~lemveg--~lkvVvVthh~Gf~e~g~~e~~~E~~~~L~er 82 (186)
T COG1751 11 NTDETLEIAVERAKELGIKHIVVASS----TGY--TALKALEMVEG--DLKVVVVTHHAGFEEKGTQEMDEEVRKELKER 82 (186)
T ss_pred chHHHHHHHHHHHHhcCcceEEEEec----ccH--HHHHHHHhccc--CceEEEEEeecccccCCceecCHHHHHHHHHc
Confidence 3455555 457888999999988652 231 22344555432 122211111 22 3788999999999
Q ss_pred CCCeEe--cCCCch-HHHHhccCCCCCHHHHHHHHHHHHHcCCceeecEEe
Q 022946 194 GLTAYN--HNLDTS-REFYSKIITTRSYDERLETLKHVREAGINVCSGGII 241 (289)
Q Consensus 194 G~~~v~--i~let~-~~~~~~i~~~~~~~~~~~~i~~~~~~Gi~v~~~~i~ 241 (289)
|.+.+. +.+.+. +.+.+++..-...+-+-++++ +-..|++|+..+-+
T Consensus 83 Ga~v~~~sHalSg~eRsis~kfGG~~p~eiiAetLR-~fg~G~KVcvEIti 132 (186)
T COG1751 83 GAKVLTQSHALSGVERSISRKFGGYSPLEIIAETLR-MFGQGVKVCVEITI 132 (186)
T ss_pred CceeeeehhhhhcchhhhhhhcCCcchHHHHHHHHH-HhcCCcEEEEEEEE
Confidence 987665 455555 555555544445677777777 66678887765443
No 325
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=82.93 E-value=29 Score=29.73 Aligned_cols=135 Identities=16% Similarity=0.218 Sum_probs=76.3
Q ss_pred CHHHHHHHHHHHHHcCCcEEEEecccCCCCC-Cc-------------hhHHHHHHHHHHHHhc--CceEEEeCCCCC---
Q 022946 123 TKDAVMQAAQKAKEAGSTRFCMGAAWRDTIG-RK-------------TNFNQILEYVKDIRDM--GMEVCCTLGMLE--- 183 (289)
Q Consensus 123 ~~eei~~~~~~~~~~g~~~i~i~~~~~~~~g-e~-------------~~~~~l~e~i~~ik~~--~~~i~~~~g~l~--- 183 (289)
+.+.-.+.++.+.+.|++-+.++---.+|.. .| ...+.+++.++.+++. .+.+. ..++.+
T Consensus 22 ~~~~~~~~~~~l~~~Gad~iElGiPfsDP~aDGpvIq~a~~~al~~G~~~~~~~~~v~~ir~~~~~~plv-~m~Y~Npi~ 100 (256)
T TIGR00262 22 TLETSLEIIKTLIEAGADALELGVPFSDPLADGPTIQAADLRALRAGMTPEKCFELLKKVRQKHPNIPIG-LLTYYNLIF 100 (256)
T ss_pred CHHHHHHHHHHHHHcCCCEEEECCCCCCCCCcCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCEE-EEEeccHHh
Confidence 6788888888888999998888642222221 11 1236788888888843 44432 222222
Q ss_pred ----HHHHHHHHHcCCCeEecCCCch---HHHHhccCC----------CCCHHHHHHHHHHHHHcCCceeecEEeec-CC
Q 022946 184 ----KHQAIELKKAGLTAYNHNLDTS---REFYSKIIT----------TRSYDERLETLKHVREAGINVCSGGIIGL-GE 245 (289)
Q Consensus 184 ----~e~l~~L~~aG~~~v~i~let~---~~~~~~i~~----------~~~~~~~~~~i~~~~~~Gi~v~~~~i~Gl-ge 245 (289)
++.++.++++|++.+.+.-+.. .+..+.++. +.+..++++.+... ..|+-...+. .|. |+
T Consensus 101 ~~G~e~f~~~~~~aGvdgviipDlp~ee~~~~~~~~~~~gl~~i~lv~P~T~~eri~~i~~~-~~gfiy~vs~-~G~TG~ 178 (256)
T TIGR00262 101 RKGVEEFYAKCKEVGVDGVLVADLPLEESGDLVEAAKKHGVKPIFLVAPNADDERLKQIAEK-SQGFVYLVSR-AGVTGA 178 (256)
T ss_pred hhhHHHHHHHHHHcCCCEEEECCCChHHHHHHHHHHHHCCCcEEEEECCCCCHHHHHHHHHh-CCCCEEEEEC-CCCCCC
Confidence 5678999999999988765443 223332221 22333333333332 1344332232 377 65
Q ss_pred C---HHHHHHHHHHHhcC
Q 022946 246 A---EEDRVGLLHTLATL 260 (289)
Q Consensus 246 t---~ed~~~~l~~l~~l 260 (289)
. ..++.+.++.+++.
T Consensus 179 ~~~~~~~~~~~i~~lr~~ 196 (256)
T TIGR00262 179 RNRAASALNELVKRLKAY 196 (256)
T ss_pred cccCChhHHHHHHHHHhh
Confidence 3 35577777777765
No 326
>PRK09282 pyruvate carboxylase subunit B; Validated
Probab=82.77 E-value=28 Score=33.82 Aligned_cols=94 Identities=16% Similarity=0.247 Sum_probs=57.7
Q ss_pred CCHHHHHHHHHHHHHcCCcEEEEecccCCCCCCchhHHHHHHHHHHHH-hcC--ceEEE--eCCCCCHHHHHHHHHcCCC
Q 022946 122 MTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIR-DMG--MEVCC--TLGMLEKHQAIELKKAGLT 196 (289)
Q Consensus 122 ~~~eei~~~~~~~~~~g~~~i~i~~~~~~~~ge~~~~~~l~e~i~~ik-~~~--~~i~~--~~g~l~~e~l~~L~~aG~~ 196 (289)
.+++.+++.++.+.+.|++.|+|.. +.|- ..-..+.++++.++ ..+ +.+++ +.|.-....+ .-.++|++
T Consensus 151 ~t~~~~~~~a~~l~~~Gad~I~i~D----t~G~-~~P~~~~~lv~~lk~~~~~pi~~H~Hnt~Gla~An~l-aAv~aGad 224 (592)
T PRK09282 151 HTIEKYVELAKELEEMGCDSICIKD----MAGL-LTPYAAYELVKALKEEVDLPVQLHSHCTSGLAPMTYL-KAVEAGVD 224 (592)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEECC----cCCC-cCHHHHHHHHHHHHHhCCCeEEEEEcCCCCcHHHHHH-HHHHhCCC
Confidence 4789999999999999999999854 1221 12245666666666 223 33444 4454334434 44578999
Q ss_pred eEecCCCch-HHHHhccCCCCCHHHHHHHHH
Q 022946 197 AYNHNLDTS-REFYSKIITTRSYDERLETLK 226 (289)
Q Consensus 197 ~v~i~let~-~~~~~~i~~~~~~~~~~~~i~ 226 (289)
.|..++.+. +.. ..-+.+.++..++
T Consensus 225 ~vD~ai~g~g~~a-----gn~~~e~vv~~L~ 250 (592)
T PRK09282 225 IIDTAISPLAFGT-----SQPPTESMVAALK 250 (592)
T ss_pred EEEeeccccCCCc-----CCHhHHHHHHHHH
Confidence 999988765 321 1224555555554
No 327
>cd00959 DeoC 2-deoxyribose-5-phosphate aldolase (DERA) of the DeoC family. DERA belongs to the class I aldolases and catalyzes a reversible aldol reaction between acetaldehyde and glyceraldehyde 3-phosphate to generate 2-deoxyribose 5-phosphate. DERA is unique in catalyzing the aldol reaction between two aldehydes, and its broad substrate specificity confers considerable utility as a biocatalyst, offering an environmentally benign alternative to chiral transition metal catalysis of the asymmetric aldol reaction.
Probab=82.62 E-value=10 Score=31.14 Aligned_cols=74 Identities=18% Similarity=0.218 Sum_probs=48.5
Q ss_pred CHHHHHHHHHHHHHcCCcEEEEecccCCCCCCchhHHHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHcCCCeEec
Q 022946 123 TKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMGMEVCCTLGMLEKHQAIELKKAGLTAYNH 200 (289)
Q Consensus 123 ~~eei~~~~~~~~~~g~~~i~i~~~~~~~~ge~~~~~~l~e~i~~ik~~~~~i~~~~g~l~~e~l~~L~~aG~~~v~i 200 (289)
+.+++....+.+.+.|.+.|-...|.. +.| ...+.+..+.+.++ ..+.+-...|.-+.+.+.+|.++|.+++..
T Consensus 129 ~~~~i~~a~ria~e~GaD~IKTsTG~~-~~~--at~~~v~~~~~~~~-~~v~ik~aGGikt~~~~l~~~~~g~~riG~ 202 (203)
T cd00959 129 TDEEIIKACEIAIEAGADFIKTSTGFG-PGG--ATVEDVKLMKEAVG-GRVGVKAAGGIRTLEDALAMIEAGATRIGT 202 (203)
T ss_pred CHHHHHHHHHHHHHhCCCEEEcCCCCC-CCC--CCHHHHHHHHHHhC-CCceEEEeCCCCCHHHHHHHHHhChhhccC
Confidence 568888888888899998876644332 112 23333333333333 445666677777889999999999887754
No 328
>PF01207 Dus: Dihydrouridine synthase (Dus); InterPro: IPR001269 Members of this family catalyse the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archae. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. Dus 1 (P53759 from SWISSPROT) from Saccharomyces cerevisiae (Baker's yeast) acts on pre-tRNA-Phe, while Dus 2 (P53720 from SWISSPROT) acts on pre-tRNA-Tyr and pre-tRNA-Leu. Dus 1 is active as a single subunit, requiring NADPH or NADH, and is stimulated by the presence of FAD []. Some family members may be targeted to the mitochondria and even have a role in mitochondria []. ; GO: 0017150 tRNA dihydrouridine synthase activity, 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing, 0055114 oxidation-reduction process; PDB: 1VHN_A 3B0P_A 3B0V_D 3B0U_Y.
Probab=82.54 E-value=4.7 Score=35.61 Aligned_cols=86 Identities=15% Similarity=0.168 Sum_probs=56.4
Q ss_pred HHHHHHcCCCeEecCCCch-HHHHhccCCC---CCHHHHHHHHHHHHH-cCCceeecEEeecCCCHHHHHHHHHHHhcCC
Q 022946 187 AIELKKAGLTAYNHNLDTS-REFYSKIITT---RSYDERLETLKHVRE-AGINVCSGGIIGLGEAEEDRVGLLHTLATLP 261 (289)
Q Consensus 187 l~~L~~aG~~~v~i~let~-~~~~~~i~~~---~~~~~~~~~i~~~~~-~Gi~v~~~~i~Glget~ed~~~~l~~l~~l~ 261 (289)
++.+.+.|++.|.+++-.. +.+.++-.+. .+++.+.+.++.+++ .+++++.-+=+|..++.++..+.+..+.+.
T Consensus 72 a~~~~~~~~~~IDlN~GCP~~~v~~~g~Ga~Ll~~p~~~~~iv~~~~~~~~~pvsvKiR~g~~~~~~~~~~~~~~l~~~- 150 (309)
T PF01207_consen 72 AEIVAELGFDGIDLNMGCPAPKVTKGGAGAALLKDPDLLAEIVKAVRKAVPIPVSVKIRLGWDDSPEETIEFARILEDA- 150 (309)
T ss_dssp HHHHCCTT-SEEEEEE---SHHHHHCT-GGGGGC-HHHHHHHHHHHHHH-SSEEEEEEESECT--CHHHHHHHHHHHHT-
T ss_pred HHhhhccCCcEEeccCCCCHHHHhcCCcChhhhcChHHhhHHHHhhhcccccceEEecccccccchhHHHHHHHHhhhc-
Confidence 3444445888888888777 6666553332 367888888888887 578899999999887888899999999988
Q ss_pred CCCCeeeecccee
Q 022946 262 THPESVPINALLA 274 (289)
Q Consensus 262 ~~~~~v~i~~~~p 274 (289)
+.+.+.++.-++
T Consensus 151 -G~~~i~vH~Rt~ 162 (309)
T PF01207_consen 151 -GVSAITVHGRTR 162 (309)
T ss_dssp -T--EEEEECS-T
T ss_pred -ccceEEEecCch
Confidence 577887776644
No 329
>cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase. IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents.
Probab=82.36 E-value=36 Score=30.33 Aligned_cols=67 Identities=21% Similarity=0.259 Sum_probs=46.0
Q ss_pred HHHHHHHHHcCCcEEEEecccCCCCCCchhHHHHHHHHHHHHhcC--ceEEEeCCCCCHHHHHHHHHcCCCeEecCC
Q 022946 128 MQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMG--MEVCCTLGMLEKHQAIELKKAGLTAYNHNL 202 (289)
Q Consensus 128 ~~~~~~~~~~g~~~i~i~~~~~~~~ge~~~~~~l~e~i~~ik~~~--~~i~~~~g~l~~e~l~~L~~aG~~~v~i~l 202 (289)
.+.++.+.+.|++.|++... .|.+ +...+.++.+++.+ +.+.. ....+.+.+..+.++|+|.|.+++
T Consensus 96 ~~~~~~l~eagv~~I~vd~~----~G~~---~~~~~~i~~ik~~~p~v~Vi~-G~v~t~~~A~~l~~aGaD~I~vg~ 164 (325)
T cd00381 96 KERAEALVEAGVDVIVIDSA----HGHS---VYVIEMIKFIKKKYPNVDVIA-GNVVTAEAARDLIDAGADGVKVGI 164 (325)
T ss_pred HHHHHHHHhcCCCEEEEECC----CCCc---HHHHHHHHHHHHHCCCceEEE-CCCCCHHHHHHHHhcCCCEEEECC
Confidence 45556667789988877432 1222 56777888887554 45443 234788999999999999998754
No 330
>TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein. This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase.
Probab=82.24 E-value=14 Score=32.37 Aligned_cols=104 Identities=19% Similarity=0.240 Sum_probs=65.5
Q ss_pred CHHHHHHHHHHHHHcCCcEEEEecccC----C--------------CCCCchhHHHHHHHHHHHHh-cCceEEEeCCCCC
Q 022946 123 TKDAVMQAAQKAKEAGSTRFCMGAAWR----D--------------TIGRKTNFNQILEYVKDIRD-MGMEVCCTLGMLE 183 (289)
Q Consensus 123 ~~eei~~~~~~~~~~g~~~i~i~~~~~----~--------------~~ge~~~~~~l~e~i~~ik~-~~~~i~~~~g~l~ 183 (289)
+.+++.+.++.+.+.|++-+++.+... + ..| +......++.+..+++ .++.+..+.|..+
T Consensus 167 ~~~~~~~~a~~l~~~G~d~i~v~nt~~~~~~~~~~~~~~~~~~~gg~sg-~~~~~~~l~~v~~i~~~~~ipvi~~GGI~s 245 (300)
T TIGR01037 167 NVTDITEIAKAAEEAGADGLTLINTLRGMKIDIKTGKPILANKTGGLSG-PAIKPIALRMVYDVYKMVDIPIIGVGGITS 245 (300)
T ss_pred ChhhHHHHHHHHHHcCCCEEEEEccCCccccccccCceeeCCCCccccc-hhhhHHHHHHHHHHHhcCCCCEEEECCCCC
Confidence 456777888888889999988753110 0 001 1122233566666764 5788888889999
Q ss_pred HHHHHHHHHcCCCeEecCCCchHHHHhccCCCCCHHHHHHHHHH-HHHcCCc
Q 022946 184 KHQAIELKKAGLTAYNHNLDTSREFYSKIITTRSYDERLETLKH-VREAGIN 234 (289)
Q Consensus 184 ~e~l~~L~~aG~~~v~i~let~~~~~~~i~~~~~~~~~~~~i~~-~~~~Gi~ 234 (289)
.+.+.++..+|+|.|.++=-.. ..+.-+.++.+.++. +.+.|+.
T Consensus 246 ~~da~~~l~~GAd~V~igr~~l-------~~p~~~~~i~~~l~~~~~~~g~~ 290 (300)
T TIGR01037 246 FEDALEFLMAGASAVQVGTAVY-------YRGFAFKKIIEGLIAFLKAEGFT 290 (300)
T ss_pred HHHHHHHHHcCCCceeecHHHh-------cCchHHHHHHHHHHHHHHHcCCC
Confidence 9999888889999888764221 122345555555554 4446653
No 331
>PRK12331 oxaloacetate decarboxylase; Provisional
Probab=82.19 E-value=22 Score=33.27 Aligned_cols=78 Identities=22% Similarity=0.274 Sum_probs=49.7
Q ss_pred CCHHHHHHHHHHHHHcCCcEEEEecccCCCCCCchhHHHHHHHHHHHH-hcCc--eEEEe--CCCCCHHHHHHHHHcCCC
Q 022946 122 MTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIR-DMGM--EVCCT--LGMLEKHQAIELKKAGLT 196 (289)
Q Consensus 122 ~~~eei~~~~~~~~~~g~~~i~i~~~~~~~~ge~~~~~~l~e~i~~ik-~~~~--~i~~~--~g~l~~e~l~~L~~aG~~ 196 (289)
.+++.+++.++.+.+.|++.|+|.. +.|- ..-..+.++++.++ ..++ .++++ .|.-....+ .-.++|++
T Consensus 151 ~~~~~~~~~a~~l~~~Gad~I~i~D----t~G~-l~P~~v~~lv~alk~~~~~pi~~H~Hnt~GlA~AN~l-aAieaGad 224 (448)
T PRK12331 151 HTIDYFVKLAKEMQEMGADSICIKD----MAGI-LTPYVAYELVKRIKEAVTVPLEVHTHATSGIAEMTYL-KAIEAGAD 224 (448)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEcC----CCCC-CCHHHHHHHHHHHHHhcCCeEEEEecCCCCcHHHHHH-HHHHcCCC
Confidence 5789999999999999999999954 1221 12245666666666 3333 34443 454333333 34478999
Q ss_pred eEecCCCch
Q 022946 197 AYNHNLDTS 205 (289)
Q Consensus 197 ~v~i~let~ 205 (289)
.|..++...
T Consensus 225 ~vD~sv~gl 233 (448)
T PRK12331 225 IIDTAISPF 233 (448)
T ss_pred EEEeecccc
Confidence 998877653
No 332
>cd04738 DHOD_2_like Dihydroorotate dehydrogenase (DHOD) class 2. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences, their cellular location and their natural electron acceptor used to reoxidize the flavin group. Members of class 1 are cytosolic enzymes and multimers, while class 2 enzymes are membrane associated, monomeric and use respiratory quinones as their physiological electron acceptors.
Probab=82.09 E-value=12 Score=33.22 Aligned_cols=79 Identities=14% Similarity=0.121 Sum_probs=54.4
Q ss_pred CCHHHHHHHHHHHHHcCCcEEEEecccC---------------CCCCCchhHHHHHHHHHHHHh-c--CceEEEeCCCCC
Q 022946 122 MTKDAVMQAAQKAKEAGSTRFCMGAAWR---------------DTIGRKTNFNQILEYVKDIRD-M--GMEVCCTLGMLE 183 (289)
Q Consensus 122 ~~~eei~~~~~~~~~~g~~~i~i~~~~~---------------~~~ge~~~~~~l~e~i~~ik~-~--~~~i~~~~g~l~ 183 (289)
.+.+++.+.++.+.+.|++-|++.+... ...| +......++.++.+++ . .+.+..+.|..+
T Consensus 213 ~~~~~~~~ia~~l~~aGad~I~~~n~~~~~~~~~~~~~~~~~gG~sG-~~~~~~~l~~v~~l~~~~~~~ipIi~~GGI~t 291 (327)
T cd04738 213 LSDEELEDIADVALEHGVDGIIATNTTISRPGLLRSPLANETGGLSG-APLKERSTEVLRELYKLTGGKIPIIGVGGISS 291 (327)
T ss_pred CCHHHHHHHHHHHHHcCCcEEEEECCcccccccccccccCCCCccCC-hhhhHHHHHHHHHHHHHhCCCCcEEEECCCCC
Confidence 4556788888888889999888754211 0112 2233345666777763 3 577888888889
Q ss_pred HHHHHHHHHcCCCeEecC
Q 022946 184 KHQAIELKKAGLTAYNHN 201 (289)
Q Consensus 184 ~e~l~~L~~aG~~~v~i~ 201 (289)
.+.+.++..+|.+.|.++
T Consensus 292 ~~da~e~l~aGAd~V~vg 309 (327)
T cd04738 292 GEDAYEKIRAGASLVQLY 309 (327)
T ss_pred HHHHHHHHHcCCCHHhcc
Confidence 998888888999988875
No 333
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of
Probab=82.09 E-value=17 Score=31.48 Aligned_cols=79 Identities=14% Similarity=0.254 Sum_probs=50.1
Q ss_pred CHHHHHHHHHHHHHcCCcEEEEecccCCCCCCc---hhHHHHHHHHHHHHhc-CceEEEeCC-CCC----HHHHHHHHHc
Q 022946 123 TKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRK---TNFNQILEYVKDIRDM-GMEVCCTLG-MLE----KHQAIELKKA 193 (289)
Q Consensus 123 ~~eei~~~~~~~~~~g~~~i~i~~~~~~~~ge~---~~~~~l~e~i~~ik~~-~~~i~~~~g-~l~----~e~l~~L~~a 193 (289)
+++++.+.++.+.+.|++.|.+..+..+..... ...+.+.++++.+++. ++.+.+-.+ ..+ .+.++.+.++
T Consensus 109 ~~~~~~~~a~~~~~~G~d~ielN~~cP~~~~~~~~~~~~~~~~eiv~~vr~~~~~pv~vKl~~~~~~~~~~~~a~~l~~~ 188 (289)
T cd02810 109 SKEDYVELARKIERAGAKALELNLSCPNVGGGRQLGQDPEAVANLLKAVKAAVDIPLLVKLSPYFDLEDIVELAKAAERA 188 (289)
T ss_pred CHHHHHHHHHHHHHhCCCEEEEEcCCCCCCCCcccccCHHHHHHHHHHHHHccCCCEEEEeCCCCCHHHHHHHHHHHHHc
Confidence 568888888888888998887754322211111 1335677778887743 555443322 233 4567888899
Q ss_pred CCCeEecC
Q 022946 194 GLTAYNHN 201 (289)
Q Consensus 194 G~~~v~i~ 201 (289)
|+|.+.+.
T Consensus 189 Gad~i~~~ 196 (289)
T cd02810 189 GADGLTAI 196 (289)
T ss_pred CCCEEEEE
Confidence 99998863
No 334
>PRK00915 2-isopropylmalate synthase; Validated
Probab=81.90 E-value=18 Score=34.40 Aligned_cols=22 Identities=23% Similarity=0.324 Sum_probs=12.4
Q ss_pred CHHHHHHHHHHHHHcCCcEEEE
Q 022946 123 TKDAVMQAAQKAKEAGSTRFCM 144 (289)
Q Consensus 123 ~~eei~~~~~~~~~~g~~~i~i 144 (289)
+++.+.+.++.+.+.|++.|.+
T Consensus 147 d~~~l~~~~~~~~~~Ga~~i~l 168 (513)
T PRK00915 147 DLDFLCRVVEAAIDAGATTINI 168 (513)
T ss_pred CHHHHHHHHHHHHHcCCCEEEE
Confidence 4455555555555556555555
No 335
>PRK05286 dihydroorotate dehydrogenase 2; Reviewed
Probab=81.81 E-value=9.3 Score=34.33 Aligned_cols=79 Identities=15% Similarity=0.179 Sum_probs=55.2
Q ss_pred CCHHHHHHHHHHHHHcCCcEEEEecccCC---------------CCCCchhHHHHHHHHHHHH-hc--CceEEEeCCCCC
Q 022946 122 MTKDAVMQAAQKAKEAGSTRFCMGAAWRD---------------TIGRKTNFNQILEYVKDIR-DM--GMEVCCTLGMLE 183 (289)
Q Consensus 122 ~~~eei~~~~~~~~~~g~~~i~i~~~~~~---------------~~ge~~~~~~l~e~i~~ik-~~--~~~i~~~~g~l~ 183 (289)
.+.+++.+.++.+.+.|++-+++.+.... ..| +..+...++.++.++ .. ++.+..+.|..+
T Consensus 222 ~~~~~~~~ia~~l~~~Gadgi~~~nt~~~~~~~~~~~~~~~~gg~SG-~~~~~~~l~~v~~l~~~~~~~ipIig~GGI~s 300 (344)
T PRK05286 222 LSDEELDDIADLALEHGIDGVIATNTTLSRDGLKGLPNADEAGGLSG-RPLFERSTEVIRRLYKELGGRLPIIGVGGIDS 300 (344)
T ss_pred CCHHHHHHHHHHHHHhCCcEEEEeCCccccccccccccCCCCCCccc-HHHHHHHHHHHHHHHHHhCCCCCEEEECCCCC
Confidence 45567888888888899999888653210 011 223344566777776 33 577888889999
Q ss_pred HHHHHHHHHcCCCeEecC
Q 022946 184 KHQAIELKKAGLTAYNHN 201 (289)
Q Consensus 184 ~e~l~~L~~aG~~~v~i~ 201 (289)
.+.+.++..+|++.|.++
T Consensus 301 ~eda~e~l~aGAd~V~v~ 318 (344)
T PRK05286 301 AEDAYEKIRAGASLVQIY 318 (344)
T ss_pred HHHHHHHHHcCCCHHHHH
Confidence 999888888999988764
No 336
>TIGR00620 sporelyase spore photoproduct lyase. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=81.69 E-value=19 Score=29.58 Aligned_cols=78 Identities=21% Similarity=0.198 Sum_probs=53.0
Q ss_pred CCHHHHHHHHHcCCCeEecCCCchHHHHhccC-CCCCHHHHHHHHHHHHHcCCceeecE--EeecCCCHHHHHHHHHHHh
Q 022946 182 LEKHQAIELKKAGLTAYNHNLDTSREFYSKII-TTRSYDERLETLKHVREAGINVCSGG--IIGLGEAEEDRVGLLHTLA 258 (289)
Q Consensus 182 l~~e~l~~L~~aG~~~v~i~let~~~~~~~i~-~~~~~~~~~~~i~~~~~~Gi~v~~~~--i~Glget~ed~~~~l~~l~ 258 (289)
.+.+.+..+...|=..+..|+.+. ++-+..- +..++++++++++.+.++|.+|+..+ |+=+....++-.++++.+.
T Consensus 34 ~nv~~Ll~l~~~~~t~~rfSlnp~-~Ii~~~E~~T~sl~~Rl~Aa~k~a~aGy~Vg~~~~PIi~~egW~e~Y~~l~~~l~ 112 (199)
T TIGR00620 34 HHVDHLLDAKHNGKTRFRFSINAD-YVIKNFEPGTSPLDKRIEAAVKVAKAGYPLGFIIAPIYIHEGWKEGYRNLLEKLD 112 (199)
T ss_pred cchhhHhcCCCCCCEEEEEEeCHH-HHHHHhcCCCCCHHHHHHHHHHHHHcCCeEEEEeeceEeeCChHHHHHHHHHHHH
Confidence 345556666666767777787664 3434443 35689999999999999999877664 3323445567777777775
Q ss_pred -cC
Q 022946 259 -TL 260 (289)
Q Consensus 259 -~l 260 (289)
.+
T Consensus 113 ~~l 115 (199)
T TIGR00620 113 EAL 115 (199)
T ss_pred HhC
Confidence 44
No 337
>PRK14042 pyruvate carboxylase subunit B; Provisional
Probab=81.54 E-value=37 Score=32.97 Aligned_cols=100 Identities=14% Similarity=0.187 Sum_probs=61.1
Q ss_pred CCHHHHHHHHHHHHHcCCcEEEEecccCCCCCCchhHHHHHHHHHHHH-hcCce--EEE--eCCCCCHHHHHHHHHcCCC
Q 022946 122 MTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIR-DMGME--VCC--TLGMLEKHQAIELKKAGLT 196 (289)
Q Consensus 122 ~~~eei~~~~~~~~~~g~~~i~i~~~~~~~~ge~~~~~~l~e~i~~ik-~~~~~--i~~--~~g~l~~e~l~~L~~aG~~ 196 (289)
.+++.+++.++.+.+.|++.|+|... .| -..-..+.++++.++ ..++. +++ +.|.-....+ .-.++|++
T Consensus 151 ~t~e~~~~~ak~l~~~Gad~I~IkDt----aG-~l~P~~v~~lv~alk~~~~ipi~~H~Hnt~Gla~an~l-aAieaGad 224 (596)
T PRK14042 151 HTLDNFLELGKKLAEMGCDSIAIKDM----AG-LLTPTVTVELYAGLKQATGLPVHLHSHSTSGLASICHY-EAVLAGCN 224 (596)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEeCCc----cc-CCCHHHHHHHHHHHHhhcCCEEEEEeCCCCCcHHHHHH-HHHHhCCC
Confidence 58899999999999999999999531 22 112245666666666 33443 333 3454333333 34578999
Q ss_pred eEecCCCch-HHHHhccCCCCCHHHHHHHHHHHHHcCCce
Q 022946 197 AYNHNLDTS-REFYSKIITTRSYDERLETLKHVREAGINV 235 (289)
Q Consensus 197 ~v~i~let~-~~~~~~i~~~~~~~~~~~~i~~~~~~Gi~v 235 (289)
.|..++.+. ... ..-+.+.++.+++ ..|+.+
T Consensus 225 ~iD~ai~glGg~t-----Gn~~tE~lv~~L~---~~g~~t 256 (596)
T PRK14042 225 HIDTAISSFSGGA-----SHPPTEALVAALT---DTPYDT 256 (596)
T ss_pred EEEeccccccCCC-----CcHhHHHHHHHHH---hcCCCC
Confidence 999888775 321 1224556555554 455543
No 338
>cd02911 arch_FMN Archeal FMN-binding domain. This family of archaeal proteins are part of the NAD(P)H-dependent flavin oxidoreductase (oxidored) FMN-binding family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN. The specific function of this group is unknown.
Probab=81.54 E-value=31 Score=29.08 Aligned_cols=126 Identities=17% Similarity=0.172 Sum_probs=74.5
Q ss_pred HHHHHHHcCCcEEEEecccCCCCCCchhHHHHHHHHHHHHhcCceEEEeCCCCCHHH----HHHHHHcCCCeEecCCCch
Q 022946 130 AAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMGMEVCCTLGMLEKHQ----AIELKKAGLTAYNHNLDTS 205 (289)
Q Consensus 130 ~~~~~~~~g~~~i~i~~~~~~~~ge~~~~~~l~e~i~~ik~~~~~i~~~~g~l~~e~----l~~L~~aG~~~v~i~let~ 205 (289)
..+.+...|.+++... + ..+++.+.+..+++.+..+.++..-.+.+. ++.+.+ +.+.|.+++...
T Consensus 40 aa~~~~~~~~~ef~~~---------~-~~~~~~~~~~~~~~~~~p~~vqi~g~~~~~~~~aa~~~~~-~~~~ielN~gCP 108 (233)
T cd02911 40 AARKLVKRGRKEFLPD---------D-PLEFIEGEIKALKDSNVLVGVNVRSSSLEPLLNAAALVAK-NAAILEINAHCR 108 (233)
T ss_pred HHHHHHhcCCcccccc---------c-hHHHHHHHHHHhhccCCeEEEEecCCCHHHHHHHHHHHhh-cCCEEEEECCCC
Confidence 3445556676666321 1 445666666666655555555543333333 334434 458888888877
Q ss_pred -HHHHhccCCC---CCHHHHHHHHHHHHHcCCceeecEEeecCCCHHHHHHHHHHHhcCCCCCCeeeecc
Q 022946 206 -REFYSKIITT---RSYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINA 271 (289)
Q Consensus 206 -~~~~~~i~~~---~~~~~~~~~i~~~~~~Gi~v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~i~~ 271 (289)
+++.+.-.+. .+++...+.++.+++.++++..-+-.|. + ++..+..+.+.+. +.+.+.+..
T Consensus 109 ~~~v~~~g~G~~Ll~~p~~l~eiv~avr~~~~pVsvKir~g~--~-~~~~~la~~l~~a--G~d~ihv~~ 173 (233)
T cd02911 109 QPEMVEAGAGEALLKDPERLSEFIKALKETGVPVSVKIRAGV--D-VDDEELARLIEKA--GADIIHVDA 173 (233)
T ss_pred cHHHhcCCcchHHcCCHHHHHHHHHHHHhcCCCEEEEEcCCc--C-cCHHHHHHHHHHh--CCCEEEECc
Confidence 6665543321 3578888888888887777665555543 3 5666777777777 466665543
No 339
>PRK13957 indole-3-glycerol-phosphate synthase; Provisional
Probab=81.42 E-value=17 Score=30.96 Aligned_cols=93 Identities=17% Similarity=0.134 Sum_probs=62.0
Q ss_pred CCHHHHHHHHHHHHHcCCcEEEEecccCCCCCCchhHHHHHHHHHHHH-hcCceEEEeCCCCCHHHHHHHHHcCCCeEec
Q 022946 122 MTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIR-DMGMEVCCTLGMLEKHQAIELKKAGLTAYNH 200 (289)
Q Consensus 122 ~~~eei~~~~~~~~~~g~~~i~i~~~~~~~~ge~~~~~~l~e~i~~ik-~~~~~i~~~~g~l~~e~l~~L~~aG~~~v~i 200 (289)
.++.+ .++.+.+.|+..+.+......+.|. + +.++.++ ...+++......+++.++.+-+.+|.|.|.+
T Consensus 61 ~d~~~---~A~~y~~~GA~aISVlTe~~~F~Gs---~----~~l~~v~~~v~~PvL~KDFIid~~QI~ea~~~GADavLL 130 (247)
T PRK13957 61 YHPVQ---IAKTYETLGASAISVLTDQSYFGGS---L----EDLKSVSSELKIPVLRKDFILDEIQIREARAFGASAILL 130 (247)
T ss_pred CCHHH---HHHHHHHCCCcEEEEEcCCCcCCCC---H----HHHHHHHHhcCCCEEeccccCCHHHHHHHHHcCCCEEEe
Confidence 35544 4445668899888765543334342 2 3333344 2467888888899999999999999999976
Q ss_pred CCCchHHHHhccCCCCCHHHHHHHHHHHHHcCCce
Q 022946 201 NLDTSREFYSKIITTRSYDERLETLKHVREAGINV 235 (289)
Q Consensus 201 ~let~~~~~~~i~~~~~~~~~~~~i~~~~~~Gi~v 235 (289)
-... .+.++..+.++.+++.|+.+
T Consensus 131 I~~~-----------L~~~~l~~l~~~a~~lGle~ 154 (247)
T PRK13957 131 IVRI-----------LTPSQIKSFLKHASSLGMDV 154 (247)
T ss_pred EHhh-----------CCHHHHHHHHHHHHHcCCce
Confidence 5422 23456677777788888764
No 340
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=81.36 E-value=22 Score=31.88 Aligned_cols=78 Identities=14% Similarity=0.175 Sum_probs=49.6
Q ss_pred CCHHHHHHHHHHHHHcCCcEEEEecccCCCCCCchhHHHHHHHHHHHHh-c--Cc--eEEEe--CCCCCHHHHHHHHHcC
Q 022946 122 MTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRD-M--GM--EVCCT--LGMLEKHQAIELKKAG 194 (289)
Q Consensus 122 ~~~eei~~~~~~~~~~g~~~i~i~~~~~~~~ge~~~~~~l~e~i~~ik~-~--~~--~i~~~--~g~l~~e~l~~L~~aG 194 (289)
.+++++.+.++.+.+.|++.|.+... .| -..-+.+.++++.+++ . .+ .++.+ .|.-....+..+ ++|
T Consensus 141 ~~~e~l~~~a~~~~~~Ga~~i~i~DT----~G-~~~P~~v~~~v~~l~~~l~~~i~ig~H~HnnlGla~ANslaAi-~aG 214 (337)
T PRK08195 141 APPEKLAEQAKLMESYGAQCVYVVDS----AG-ALLPEDVRDRVRALRAALKPDTQVGFHGHNNLGLGVANSLAAV-EAG 214 (337)
T ss_pred CCHHHHHHHHHHHHhCCCCEEEeCCC----CC-CCCHHHHHHHHHHHHHhcCCCCeEEEEeCCCcchHHHHHHHHH-HhC
Confidence 48899999999999999999988542 22 1223456666666552 2 23 33433 454334444444 689
Q ss_pred CCeEecCCCch
Q 022946 195 LTAYNHNLDTS 205 (289)
Q Consensus 195 ~~~v~i~let~ 205 (289)
+++|..++.+.
T Consensus 215 a~~iD~Sl~Gl 225 (337)
T PRK08195 215 ATRIDGSLAGL 225 (337)
T ss_pred CCEEEecChhh
Confidence 99998877653
No 341
>PRK12330 oxaloacetate decarboxylase; Provisional
Probab=81.09 E-value=51 Score=31.27 Aligned_cols=100 Identities=14% Similarity=0.261 Sum_probs=61.0
Q ss_pred CCHHHHHHHHHHHHHcCCcEEEEecccCCCCCCchhHHHHHHHHHHHHh-c--Cce--EEEe--CCCCCHHHHHHHHHcC
Q 022946 122 MTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRD-M--GME--VCCT--LGMLEKHQAIELKKAG 194 (289)
Q Consensus 122 ~~~eei~~~~~~~~~~g~~~i~i~~~~~~~~ge~~~~~~l~e~i~~ik~-~--~~~--i~~~--~g~l~~e~l~~L~~aG 194 (289)
.+++.+++.++.+.+.|++.|+|.. +.|- ..-..+.++++.+++ . ++. ++++ .|.- ....-.-.++|
T Consensus 152 ~t~e~~~~~a~~l~~~Gad~I~IkD----taGl-l~P~~~~~LV~~Lk~~~~~~ipI~~H~Hnt~GlA-~An~laAieAG 225 (499)
T PRK12330 152 HTVEGFVEQAKRLLDMGADSICIKD----MAAL-LKPQPAYDIVKGIKEACGEDTRINLHCHSTTGVT-LVSLMKAIEAG 225 (499)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEeCC----CccC-CCHHHHHHHHHHHHHhCCCCCeEEEEeCCCCCcH-HHHHHHHHHcC
Confidence 4889999999999999999999953 1221 122456666666663 3 333 4444 4433 33344456789
Q ss_pred CCeEecCCCch-HHHHhccCCCCCHHHHHHHHHHHHHcCCce
Q 022946 195 LTAYNHNLDTS-REFYSKIITTRSYDERLETLKHVREAGINV 235 (289)
Q Consensus 195 ~~~v~i~let~-~~~~~~i~~~~~~~~~~~~i~~~~~~Gi~v 235 (289)
++.|..++.+. ... ..-..++++.+++ ..|+.+
T Consensus 226 ad~vDtai~Glg~~a-----Gn~atE~vv~~L~---~~g~~t 259 (499)
T PRK12330 226 VDVVDTAISSMSLGP-----GHNPTESLVEMLE---GTGYTT 259 (499)
T ss_pred CCEEEeecccccccc-----cchhHHHHHHHHH---hcCCCC
Confidence 99999888775 211 1124566666554 456553
No 342
>cd00537 MTHFR Methylenetetrahydrofolate reductase (MTHFR). 5,10-Methylenetetrahydrofolate is reduced to 5-methyltetrahydrofolate by methylenetetrahydrofolate reductase, a cytoplasmic, NAD(P)-dependent enzyme. 5-methyltetrahydrofolate is utilized by methionine synthase to convert homocysteine to methionine. The enzymatic mechanism is a ping-pong bi-bi mechanism, in which NAD(P)+ release precedes the binding of methylenetetrahydrofolate and the acceptor is free FAD. The family includes the 5,10-methylenetetrahydrofolate reductase EC:1.7.99.5 from prokaryotes and methylenetetrahydrofolate reductase EC: 1.5.1.20 from eukaryotes. The bacterial enzyme is a homotetramer and NADH is the preferred reductant while the eukaryotic enzyme is a homodimer and NADPH is the preferred reductant. In humans, there are several clinically significant mutations in MTHFR that result in hyperhomocysteinemia, which is a risk factor for the development of cardiovascular disease.
Probab=80.50 E-value=37 Score=29.27 Aligned_cols=49 Identities=14% Similarity=0.047 Sum_probs=34.1
Q ss_pred CCHHHHHHHHHHHHHcCCcEEEEecccCCCCCC-----chhHHHHHHHHHHHHh
Q 022946 122 MTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGR-----KTNFNQILEYVKDIRD 170 (289)
Q Consensus 122 ~~~eei~~~~~~~~~~g~~~i~i~~~~~~~~ge-----~~~~~~l~e~i~~ik~ 170 (289)
++..++...+..+.+.|++.+.+.+|+....+. +..+.+-.++++.++.
T Consensus 70 ~n~~~l~~~L~~~~~~Gi~~iL~l~GD~~~~~~~~~~~~~~~~~a~~Li~~i~~ 123 (274)
T cd00537 70 RNRIELQSILLGAHALGIRNILALRGDPPKGGDQPGAKPVGFVYAVDLVELIRK 123 (274)
T ss_pred CCHHHHHHHHHHHHHCCCCeEEEeCCCCCCCCCCCCCCCCCCCCHHHHHHHHHH
Confidence 355888888888999999999887666544332 2345566667766663
No 343
>COG2513 PrpB PEP phosphonomutase and related enzymes [Carbohydrate transport and metabolism]
Probab=80.44 E-value=15 Score=31.98 Aligned_cols=42 Identities=14% Similarity=0.163 Sum_probs=24.4
Q ss_pred HHHHHHcCCCeEecCCCch-------HHHHhccCCCCCHHHHHHHHHHH
Q 022946 187 AIELKKAGLTAYNHNLDTS-------REFYSKIITTRSYDERLETLKHV 228 (289)
Q Consensus 187 l~~L~~aG~~~v~i~let~-------~~~~~~i~~~~~~~~~~~~i~~~ 228 (289)
+++|.++|+++|..++-++ ...++.+....+...+++.+..-
T Consensus 220 ~~~L~~~Gv~~V~~~~~~~raa~~a~~~~~~~i~~~gt~~~~~d~m~~r 268 (289)
T COG2513 220 VAELAELGVKRVSYGLTAFRAALKAAEQAAREIRREGTQANVLDKMQTR 268 (289)
T ss_pred HHHHHhcCceEEEECcHHHHHHHHHHHHHHHHHHhcCchhhHHHHHHHH
Confidence 4677788888888776442 23444444444555555555443
No 344
>PRK12581 oxaloacetate decarboxylase; Provisional
Probab=80.40 E-value=46 Score=31.26 Aligned_cols=100 Identities=19% Similarity=0.234 Sum_probs=57.4
Q ss_pred CCHHHHHHHHHHHHHcCCcEEEEecccCCCCCCchhHHHHHHHHHHHHh-cCce--EEE--eCCCCCHHHHHHHHHcCCC
Q 022946 122 MTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRD-MGME--VCC--TLGMLEKHQAIELKKAGLT 196 (289)
Q Consensus 122 ~~~eei~~~~~~~~~~g~~~i~i~~~~~~~~ge~~~~~~l~e~i~~ik~-~~~~--i~~--~~g~l~~e~l~~L~~aG~~ 196 (289)
.+.+-+++.++.+.+.|++.|+|... .| -..-..+.++++.+++ .+++ +++ +.|.-....+. -.++|++
T Consensus 160 ~t~~y~~~~a~~l~~~Gad~I~IkDt----aG-~l~P~~v~~Lv~alk~~~~~pi~~H~Hnt~GlA~An~la-AieAGad 233 (468)
T PRK12581 160 HTLNYYLSLVKELVEMGADSICIKDM----AG-ILTPKAAKELVSGIKAMTNLPLIVHTHATSGISQMTYLA-AVEAGAD 233 (468)
T ss_pred CcHHHHHHHHHHHHHcCCCEEEECCC----CC-CcCHHHHHHHHHHHHhccCCeEEEEeCCCCccHHHHHHH-HHHcCCC
Confidence 36777888888888999999988541 22 1122455555555553 2333 333 34543344343 4478999
Q ss_pred eEecCCCch-HHHHhccCCCCCHHHHHHHHHHHHHcCCce
Q 022946 197 AYNHNLDTS-REFYSKIITTRSYDERLETLKHVREAGINV 235 (289)
Q Consensus 197 ~v~i~let~-~~~~~~i~~~~~~~~~~~~i~~~~~~Gi~v 235 (289)
.|..++.+. +.. ..-+.+.++.+++ ..|+.+
T Consensus 234 ~vD~ai~g~g~ga-----gN~~tE~lv~~L~---~~g~~t 265 (468)
T PRK12581 234 RIDTALSPFSEGT-----SQPATESMYLALK---EAGYDI 265 (468)
T ss_pred EEEeeccccCCCc-----CChhHHHHHHHHH---hcCCCC
Confidence 999888765 321 1224555555444 456654
No 345
>cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain. FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox
Probab=80.38 E-value=8.1 Score=33.11 Aligned_cols=23 Identities=30% Similarity=0.466 Sum_probs=13.5
Q ss_pred CHHHHHHHHHHHHHcCCcEEEEe
Q 022946 123 TKDAVMQAAQKAKEAGSTRFCMG 145 (289)
Q Consensus 123 ~~eei~~~~~~~~~~g~~~i~i~ 145 (289)
+++.+.+.++.+.+.|++.|.+.
T Consensus 137 ~~~~~~~~~~~~~~~G~~~i~l~ 159 (259)
T cd07939 137 DPDFLIEFAEVAQEAGADRLRFA 159 (259)
T ss_pred CHHHHHHHHHHHHHCCCCEEEeC
Confidence 45666666666656666666553
No 346
>cd00452 KDPG_aldolase KDPG and KHG aldolase. This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources.
Probab=80.29 E-value=30 Score=28.05 Aligned_cols=70 Identities=19% Similarity=0.086 Sum_probs=47.9
Q ss_pred CCHHHHHHHHHHHHHcCCcEEEEecccCCCCCCchhHHHHHHHHHHHHhcCceEEEeCCC-CCHHHHHHHHHcCCCeEec
Q 022946 122 MTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMGMEVCCTLGM-LEKHQAIELKKAGLTAYNH 200 (289)
Q Consensus 122 ~~~eei~~~~~~~~~~g~~~i~i~~~~~~~~ge~~~~~~l~e~i~~ik~~~~~i~~~~g~-l~~e~l~~L~~aG~~~v~i 200 (289)
.+++++.+.++.+.+.|++.+.+.... + .-.+.++.+++..-++....|. ++.+.++...++|.+.+..
T Consensus 13 ~~~~~~~~~~~~l~~~G~~~vev~~~~------~----~~~~~i~~l~~~~~~~~iGag~v~~~~~~~~a~~~Ga~~i~~ 82 (190)
T cd00452 13 DDAEDALALAEALIEGGIRAIEITLRT------P----GALEAIRALRKEFPEALIGAGTVLTPEQADAAIAAGAQFIVS 82 (190)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEeCCC------h----hHHHHHHHHHHHCCCCEEEEEeCCCHHHHHHHHHcCCCEEEc
Confidence 478999999999999999988775411 1 1333556555332233333444 6699999999999998865
Q ss_pred C
Q 022946 201 N 201 (289)
Q Consensus 201 ~ 201 (289)
+
T Consensus 83 p 83 (190)
T cd00452 83 P 83 (190)
T ss_pred C
Confidence 4
No 347
>PRK00507 deoxyribose-phosphate aldolase; Provisional
Probab=80.25 E-value=20 Score=29.98 Aligned_cols=76 Identities=20% Similarity=0.227 Sum_probs=47.6
Q ss_pred CCHHHHHHHHHHHHHcCCcEEEEecccCCCCCCchhHHHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHcCCCeEecC
Q 022946 122 MTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMGMEVCCTLGMLEKHQAIELKKAGLTAYNHN 201 (289)
Q Consensus 122 ~~~eei~~~~~~~~~~g~~~i~i~~~~~~~~ge~~~~~~l~e~i~~ik~~~~~i~~~~g~l~~e~l~~L~~aG~~~v~i~ 201 (289)
++.+++.+..+.+.+.|++.|-...| ..+.| ...+.+..+.+.+ ...+.+-.+.|.-+.+.+..|.++|.+++..|
T Consensus 133 L~~e~i~~a~~~~~~agadfIKTsTG-~~~~g--at~~~v~~m~~~~-~~~~~IKasGGIrt~~~a~~~i~aGA~riGtS 208 (221)
T PRK00507 133 LTDEEKVKACEIAKEAGADFVKTSTG-FSTGG--ATVEDVKLMRETV-GPRVGVKASGGIRTLEDALAMIEAGATRLGTS 208 (221)
T ss_pred CCHHHHHHHHHHHHHhCCCEEEcCCC-CCCCC--CCHHHHHHHHHHh-CCCceEEeeCCcCCHHHHHHHHHcCcceEccC
Confidence 67788888888888888885543332 22223 2233333332222 22355666778888999999999999887664
No 348
>PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional
Probab=80.20 E-value=7.4 Score=34.00 Aligned_cols=121 Identities=15% Similarity=0.191 Sum_probs=67.8
Q ss_pred CCHHHHHHHHHHHHHcCCcEEEEecccCCCCCCchhHHHHHHHHHHHHh-c---CceEEEe--CCCCCHHHHHHHHHcCC
Q 022946 122 MTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRD-M---GMEVCCT--LGMLEKHQAIELKKAGL 195 (289)
Q Consensus 122 ~~~eei~~~~~~~~~~g~~~i~i~~~~~~~~ge~~~~~~l~e~i~~ik~-~---~~~i~~~--~g~l~~e~l~~L~~aG~ 195 (289)
.+++.+.+.++.+.+.|++.|.|..... ...| .++.++++.+++ . .+.++.+ .|.-....+..+ ++|+
T Consensus 152 ~~~~~~~~~~~~~~~~G~d~i~l~DT~G--~~~P---~~v~~lv~~l~~~~~~~~i~~H~Hn~~Gla~AN~laA~-~aG~ 225 (287)
T PRK05692 152 VPPEAVADVAERLFALGCYEISLGDTIG--VGTP---GQVRAVLEAVLAEFPAERLAGHFHDTYGQALANIYASL-EEGI 225 (287)
T ss_pred CCHHHHHHHHHHHHHcCCcEEEeccccC--ccCH---HHHHHHHHHHHHhCCCCeEEEEecCCCCcHHHHHHHHH-HhCC
Confidence 4789999999999999999998854211 1223 445555555552 2 2334444 454444444444 6799
Q ss_pred CeEecCCCch-HHHHhcc-CCCCCHHHHHHHHHHHHHcCCceeecEEeecCCCHHHHHHHHHHHhc
Q 022946 196 TAYNHNLDTS-REFYSKI-ITTRSYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHTLAT 259 (289)
Q Consensus 196 ~~v~i~let~-~~~~~~i-~~~~~~~~~~~~i~~~~~~Gi~v~~~~i~Glget~ed~~~~l~~l~~ 259 (289)
+.+..++.+. .--+..= ...-..++++-.++ ..|+.+ |-+.+.+.+..+++.+
T Consensus 226 ~~id~s~~GlGecpfa~g~aGN~~~E~lv~~L~---~~g~~t--------~idl~~l~~~~~~~~~ 280 (287)
T PRK05692 226 TVFDASVGGLGGCPYAPGASGNVATEDVLYMLH---GLGIET--------GIDLDKLVRAGQFIQS 280 (287)
T ss_pred CEEEEEccccCCCCCCCCccccccHHHHHHHHH---hcCCCC--------CcCHHHHHHHHHHHHH
Confidence 9999888765 3111110 11235666666664 346543 2234555555555544
No 349
>COG2876 AroA 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase [Amino acid transport and metabolism]
Probab=80.06 E-value=32 Score=29.53 Aligned_cols=105 Identities=12% Similarity=0.177 Sum_probs=68.0
Q ss_pred CHHHHHHHHHHHHHcCCcEEEEecccCCCCCCchhH----HHHHHHHHHHH-hcCceEEEeCCCCCHHHHHHHHHcCCCe
Q 022946 123 TKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNF----NQILEYVKDIR-DMGMEVCCTLGMLEKHQAIELKKAGLTA 197 (289)
Q Consensus 123 ~~eei~~~~~~~~~~g~~~i~i~~~~~~~~ge~~~~----~~l~e~i~~ik-~~~~~i~~~~g~l~~e~l~~L~~aG~~~ 197 (289)
+.|+|...++..+..|++-+ . ||-+.|.-.|..| ++-++++++.+ +.|+.+.+- .++.+.++...++ +|.
T Consensus 57 s~E~i~~~A~~vk~~Ga~~l-R-GgafKPRTSPYsFQGlge~gL~~l~~a~~~~Gl~vvtE--vm~~~~~e~~~~y-~Di 131 (286)
T COG2876 57 SEEQVRETAESVKAAGAKAL-R-GGAFKPRTSPYSFQGLGEEGLKLLKRAADETGLPVVTE--VMDVRDVEAAAEY-ADI 131 (286)
T ss_pred CHHHHHHHHHHHHHcchhhc-c-CCcCCCCCCcccccccCHHHHHHHHHHHHHcCCeeEEE--ecCHHHHHHHHhh-hhH
Confidence 56888988888888887644 2 2222232223222 45566666666 668776543 3677788888887 787
Q ss_pred EecCCCch--HHHHhccCC-----------CCCHHHHHHHHHHHHHcC
Q 022946 198 YNHNLDTS--REFYSKIIT-----------TRSYDERLETLKHVREAG 232 (289)
Q Consensus 198 v~i~let~--~~~~~~i~~-----------~~~~~~~~~~i~~~~~~G 232 (289)
+.+|.--. =++++.+.+ ..+.++|+.+.+.+...|
T Consensus 132 lqvGARNMQNF~LLke~G~~~kPvLLKRg~~aTieEwL~AAEYI~s~G 179 (286)
T COG2876 132 LQVGARNMQNFALLKEVGRQNKPVLLKRGLSATIEEWLNAAEYILSHG 179 (286)
T ss_pred HHhcccchhhhHHHHHhcccCCCeEEecCccccHHHHHHHHHHHHhCC
Confidence 77765443 234444332 247899999999998887
No 350
>COG0826 Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones]
Probab=80.00 E-value=14 Score=33.27 Aligned_cols=127 Identities=17% Similarity=0.067 Sum_probs=74.5
Q ss_pred HHHHHHHHHcCCcEEEEecccCCCCCCc--hhHHHHHHHHHHHHhcCceEEEe------CCCCC--HHHHHHHHHcCCCe
Q 022946 128 MQAAQKAKEAGSTRFCMGAAWRDTIGRK--TNFNQILEYVKDIRDMGMEVCCT------LGMLE--KHQAIELKKAGLTA 197 (289)
Q Consensus 128 ~~~~~~~~~~g~~~i~i~~~~~~~~ge~--~~~~~l~e~i~~ik~~~~~i~~~------~g~l~--~e~l~~L~~aG~~~ 197 (289)
++.++.+.+.|++.|.+++.....-+.. ...+++.+.++.+.+.|.++.++ ++.+. .+.++.|.+.|+|.
T Consensus 16 l~~l~~ai~~GADaVY~G~~~~~~R~~a~nfs~~~l~e~i~~ah~~gkk~~V~~N~~~~~~~~~~~~~~l~~l~e~GvDa 95 (347)
T COG0826 16 LEDLKAAIAAGADAVYIGEKEFGLRRRALNFSVEDLAEAVELAHSAGKKVYVAVNTLLHNDELETLERYLDRLVELGVDA 95 (347)
T ss_pred HHHHHHHHHcCCCEEEeCCcccccccccccCCHHHHHHHHHHHHHcCCeEEEEeccccccchhhHHHHHHHHHHHcCCCE
Confidence 4555566678899988865322111212 34577888888888888764332 23333 56788999999999
Q ss_pred EecCCCchHHHHhccCC-------CCCHHHHHHHHHHHHHcCCceeecEEeecCCCHHHHHHHHHHH
Q 022946 198 YNHNLDTSREFYSKIIT-------TRSYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHTL 257 (289)
Q Consensus 198 v~i~let~~~~~~~i~~-------~~~~~~~~~~i~~~~~~Gi~v~~~~i~Glget~ed~~~~l~~l 257 (289)
|.++-=+.=.+.+...| ....-.-.++++.+++.|... +++--.-+.+++.+..+.+
T Consensus 96 viv~Dpg~i~l~~e~~p~l~ih~S~q~~v~N~~~~~f~~~~G~~r---vVl~rEls~~ei~~i~~~~ 159 (347)
T COG0826 96 VIVADPGLIMLARERGPDLPIHVSTQANVTNAETAKFWKELGAKR---VVLPRELSLEEIKEIKEQT 159 (347)
T ss_pred EEEcCHHHHHHHHHhCCCCcEEEeeeEecCCHHHHHHHHHcCCEE---EEeCccCCHHHHHHHHHhC
Confidence 98865443222222221 112234457788888888542 1221144567777776665
No 351
>PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed
Probab=79.99 E-value=38 Score=29.09 Aligned_cols=70 Identities=20% Similarity=0.204 Sum_probs=46.1
Q ss_pred HHHHHHHHHcCCcEEEEecccCCCCCCchhHHHHHHHHHHHH-hcCceEEEeCCCCCHHHHHHHHHcCCCeEecCCCc
Q 022946 128 MQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIR-DMGMEVCCTLGMLEKHQAIELKKAGLTAYNHNLDT 204 (289)
Q Consensus 128 ~~~~~~~~~~g~~~i~i~~~~~~~~ge~~~~~~l~e~i~~ik-~~~~~i~~~~g~l~~e~l~~L~~aG~~~v~i~let 204 (289)
.+.++.+.+.|+.-+.+......+.|. ++.++.++ ...+++....-..+..++.+..++|.|.|.+....
T Consensus 73 ~~~A~~~~~~GA~aisvlte~~~f~g~-------~~~l~~v~~~v~iPvl~kdfi~~~~qi~~a~~~GAD~VlLi~~~ 143 (260)
T PRK00278 73 VEIAKAYEAGGAACLSVLTDERFFQGS-------LEYLRAARAAVSLPVLRKDFIIDPYQIYEARAAGADAILLIVAA 143 (260)
T ss_pred HHHHHHHHhCCCeEEEEecccccCCCC-------HHHHHHHHHhcCCCEEeeeecCCHHHHHHHHHcCCCEEEEEecc
Confidence 444556667888888665433333332 34444455 34677766666678889999999999999876544
No 352
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members. are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....
Probab=79.97 E-value=14 Score=31.04 Aligned_cols=23 Identities=17% Similarity=0.355 Sum_probs=11.5
Q ss_pred CHHHHHHHHHHHHHcCCcEEEEe
Q 022946 123 TKDAVMQAAQKAKEAGSTRFCMG 145 (289)
Q Consensus 123 ~~eei~~~~~~~~~~g~~~i~i~ 145 (289)
+++++.+.++.+.+.|++.|.|.
T Consensus 135 ~~~~~~~~~~~~~~~g~~~i~l~ 157 (237)
T PF00682_consen 135 DPEELLELAEALAEAGADIIYLA 157 (237)
T ss_dssp SHHHHHHHHHHHHHHT-SEEEEE
T ss_pred cHHHHHHHHHHHHHcCCeEEEee
Confidence 44555555555555555555553
No 353
>PF10566 Glyco_hydro_97: Glycoside hydrolase 97 ; InterPro: IPR019563 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is the 97th family of glycosidases, in this case bacterial. The central part of the GH97 family protein sequences represents a typical and complete (beta/alpha)8-barrel or catalytic TIM-barrel type domain. The N- and C-terminal parts of the sequences, mainly consisting of beta-strands, most probably form two additional non-catalytic domains with as yet unknown functions. The non-catalytic domains of glycosidases from the alpha-galactosidase and alpha-glucosidase superfamilies are also predominantly composed of beta-strands, and at least some of these domains are involved in oligomerisation and carbohydrate binding. In all known glycosidases with the (beta-alpha)8-barrel fold, the amino acid residues at the active site are located on the C-termini of the beta-strands []. ; PDB: 2JKP_A 2JKE_A 2D73_B 2ZQ0_B 2JKA_A 3A24_A.
Probab=79.93 E-value=31 Score=29.90 Aligned_cols=107 Identities=15% Similarity=0.089 Sum_probs=67.9
Q ss_pred CCHHHHHHHHHHHHHcCCcEEEEecccCCCCC-------CchhHHHHHHHHHHHHhcCceEE--EeC-C--------CCC
Q 022946 122 MTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIG-------RKTNFNQILEYVKDIRDMGMEVC--CTL-G--------MLE 183 (289)
Q Consensus 122 ~~~eei~~~~~~~~~~g~~~i~i~~~~~~~~g-------e~~~~~~l~e~i~~ik~~~~~i~--~~~-g--------~l~ 183 (289)
.+.+...+.++.+.++|+..+.+-.|+..... .+..-.++.++++..++.|+.+. .+. + .-.
T Consensus 29 ~~t~~~k~yIDfAa~~G~eYvlvD~GW~~~~~~~~~d~~~~~~~~dl~elv~Ya~~KgVgi~lw~~~~~~~~~~~~~~~~ 108 (273)
T PF10566_consen 29 ATTETQKRYIDFAAEMGIEYVLVDAGWYGWEKDDDFDFTKPIPDFDLPELVDYAKEKGVGIWLWYHSETGGNVANLEKQL 108 (273)
T ss_dssp SSHHHHHHHHHHHHHTT-SEEEEBTTCCGS--TTT--TT-B-TT--HHHHHHHHHHTT-EEEEEEECCHTTBHHHHHCCH
T ss_pred CCHHHHHHHHHHHHHcCCCEEEeccccccccccccccccccCCccCHHHHHHHHHHcCCCEEEEEeCCcchhhHhHHHHH
Confidence 68899999999999999999988777752100 12233688889988888886642 221 1 012
Q ss_pred HHHHHHHHHcCCCeEecCC-Cch-HHHHhccCCCCCHHHHHHHHHHHHHcCCceee
Q 022946 184 KHQAIELKKAGLTAYNHNL-DTS-REFYSKIITTRSYDERLETLKHVREAGINVCS 237 (289)
Q Consensus 184 ~e~l~~L~~aG~~~v~i~l-et~-~~~~~~i~~~~~~~~~~~~i~~~~~~Gi~v~~ 237 (289)
++.+..+++.|+..|-++. ++. ++ ...-..+.++.+.+..+-|+.
T Consensus 109 ~~~f~~~~~~Gv~GvKidF~~~d~Q~---------~v~~y~~i~~~AA~~~Lmvnf 155 (273)
T PF10566_consen 109 DEAFKLYAKWGVKGVKIDFMDRDDQE---------MVNWYEDILEDAAEYKLMVNF 155 (273)
T ss_dssp HHHHHHHHHCTEEEEEEE--SSTSHH---------HHHHHHHHHHHHHHTT-EEEE
T ss_pred HHHHHHHHHcCCCEEeeCcCCCCCHH---------HHHHHHHHHHHHHHcCcEEEe
Confidence 7788999999999998864 332 22 234556677777777765544
No 354
>PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed
Probab=79.92 E-value=33 Score=28.35 Aligned_cols=73 Identities=18% Similarity=0.168 Sum_probs=50.4
Q ss_pred CCHHHHHHHHHHHHHcCCcEEEEecccCCCCCCchhHHHHHHHHHHHH-hcCceEEEeCC-CCCHHHHHHHHHcCCCeEe
Q 022946 122 MTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIR-DMGMEVCCTLG-MLEKHQAIELKKAGLTAYN 199 (289)
Q Consensus 122 ~~~eei~~~~~~~~~~g~~~i~i~~~~~~~~ge~~~~~~l~e~i~~ik-~~~~~i~~~~g-~l~~e~l~~L~~aG~~~v~ 199 (289)
.+.++..+.++.+.+.|++-+-+.-. + +... +.++.++ +.+-.+.+-.| .++.+.++...++|.+.+.
T Consensus 19 ~~~~~~~~~~~a~~~gGi~~iEvt~~--~----~~~~----~~i~~l~~~~~~~~~iGaGTV~~~~~~~~a~~aGA~fiv 88 (206)
T PRK09140 19 ITPDEALAHVGALIEAGFRAIEIPLN--S----PDPF----DSIAALVKALGDRALIGAGTVLSPEQVDRLADAGGRLIV 88 (206)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEeCC--C----ccHH----HHHHHHHHHcCCCcEEeEEecCCHHHHHHHHHcCCCEEE
Confidence 58899999999999999998877531 1 2222 3455554 33333444444 4899999999999999887
Q ss_pred cCCCc
Q 022946 200 HNLDT 204 (289)
Q Consensus 200 i~let 204 (289)
.+...
T Consensus 89 sp~~~ 93 (206)
T PRK09140 89 TPNTD 93 (206)
T ss_pred CCCCC
Confidence 75433
No 355
>cd03412 CbiK_N Anaerobic cobalamin biosynthetic cobalt chelatase (CbiK), N-terminal domain. CbiK is part of the cobalt-early path for cobalamin biosynthesis. It catalyzes the insertion of cobalt into the oxidized form of precorrin-2, factor II (sirohydrochlorin), the second step of the anaerobic branch of vitamin B12 biosynthesis. CbiK belongs to the class II family of chelatases and is a homomeric enzyme that does not require ATP for its enzymatic activity.
Probab=79.90 E-value=24 Score=26.66 Aligned_cols=65 Identities=17% Similarity=0.180 Sum_probs=42.3
Q ss_pred CCHHHHHHHHHcCCCeEec-CCCchHHHHhccCCCCCHHHHHHHHHHHHHcCCceeecEEeec--CCCHHHHHHHHHHHh
Q 022946 182 LEKHQAIELKKAGLTAYNH-NLDTSREFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGL--GEAEEDRVGLLHTLA 258 (289)
Q Consensus 182 l~~e~l~~L~~aG~~~v~i-~let~~~~~~~i~~~~~~~~~~~~i~~~~~~Gi~v~~~~i~Gl--get~ed~~~~l~~l~ 258 (289)
...+.+++|.+.|++.|.+ ++ .+.++..++++.+.++.++..+.++ .+|- +.+.+|....+..+.
T Consensus 57 ~~~eaL~~l~~~G~~~V~V~Pl--------~l~~G~e~~di~~~v~~~~~~~~~i----~~g~pLl~~~~d~~~v~~al~ 124 (127)
T cd03412 57 TPEEALAKLAADGYTEVIVQSL--------HIIPGEEYEKLKREVDAFKKGFKKI----KLGRPLLYSPEDYEEVAAALK 124 (127)
T ss_pred CHHHHHHHHHHCCCCEEEEEeC--------eeECcHHHHHHHHHHHHHhCCCceE----EEccCCCCCHHHHHHHHHHHH
Confidence 4577889999999988875 44 2334445677777777776323333 3443 667788877777654
No 356
>TIGR03849 arch_ComA phosphosulfolactate synthase. This model finds the ComA (Coenzyme M biosynthesis A) protein, phosphosulfolactate synthase, in methanogenic archaea. The ComABC pathway is one of at least two pathways to the intermediate sulfopyruvate. Coenzyme M occurs rarely and sporadically outside of the archaea, as for expoxide metabolism in Xanthobacter autotrophicus Py2, but candidate phosphosulfolactate synthases from that and other species occur fall below the cutoff and outside the scope of this model. This model deliberately is narrower in scope than pfam02679.
Probab=79.88 E-value=36 Score=28.80 Aligned_cols=102 Identities=18% Similarity=0.284 Sum_probs=61.9
Q ss_pred CCHHHHHHHHHHHHHcCCcEEEEecccCCCCCCc-hhHHHHHHHHHHHHhcCce-EEEeCCC--CCHHH----HHHHHHc
Q 022946 122 MTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRK-TNFNQILEYVKDIRDMGME-VCCTLGM--LEKHQ----AIELKKA 193 (289)
Q Consensus 122 ~~~eei~~~~~~~~~~g~~~i~i~~~~~~~~ge~-~~~~~l~e~i~~ik~~~~~-i~~~~g~--l~~e~----l~~L~~a 193 (289)
++.+.+.+.++.+.++|+. ++.+ |+ .-|- .....+-++++.+++.|+. +.+++|. ++.+. ++..++.
T Consensus 38 ~~~~~l~eki~la~~~~V~-v~~G-Gt---l~E~~~~q~~~~~Yl~~~k~lGf~~IEiS~G~~~i~~~~~~rlI~~~~~~ 112 (237)
T TIGR03849 38 IDRDIVKEKIEMYKDYGIK-VYPG-GT---LFEIAHSKGKFDEYLNECDELGFEAVEISDGSMEISLEERCNLIERAKDN 112 (237)
T ss_pred ccHHHHHHHHHHHHHcCCe-EeCC-cc---HHHHHHHhhhHHHHHHHHHHcCCCEEEEcCCccCCCHHHHHHHHHHHHhC
Confidence 4556666666777778874 3333 21 1111 1225566666777788877 5677775 44443 4666667
Q ss_pred CCCeEe-cCCCch-HHHHhccCCCCCHHHHHHHHHHHHHcCCc
Q 022946 194 GLTAYN-HNLDTS-REFYSKIITTRSYDERLETLKHVREAGIN 234 (289)
Q Consensus 194 G~~~v~-i~let~-~~~~~~i~~~~~~~~~~~~i~~~~~~Gi~ 234 (289)
|+...+ +|.... .+ ...+.+++++.++..-++|-.
T Consensus 113 g~~v~~EvG~K~~~~~------~~~~~~~~i~~~~~~LeAGA~ 149 (237)
T TIGR03849 113 GFMVLSEVGKKSPEKD------SELTPDDRIKLINKDLEAGAD 149 (237)
T ss_pred CCeEeccccccCCccc------ccCCHHHHHHHHHHHHHCCCc
Confidence 876655 555432 11 124678999999998899974
No 357
>COG1902 NemA NADH:flavin oxidoreductases, Old Yellow Enzyme family [Energy production and conversion]
Probab=79.86 E-value=16 Score=33.11 Aligned_cols=83 Identities=18% Similarity=0.177 Sum_probs=50.6
Q ss_pred CCHHHHHHHHHHHHHcC-CcEEEEecccCCCCCCchh--HHHHHHHHHHHH-hcCceEEEeCCCCCHHHHHHHHHcC-CC
Q 022946 122 MTKDAVMQAAQKAKEAG-STRFCMGAAWRDTIGRKTN--FNQILEYVKDIR-DMGMEVCCTLGMLEKHQAIELKKAG-LT 196 (289)
Q Consensus 122 ~~~eei~~~~~~~~~~g-~~~i~i~~~~~~~~ge~~~--~~~l~e~i~~ik-~~~~~i~~~~g~l~~e~l~~L~~aG-~~ 196 (289)
.+.++.++.++.+.+.| +.-+.+.++.....+.... ..+..+..+.++ ...+.+..+.+..+.+.++.+.+.| +|
T Consensus 234 ~~~~e~~~la~~L~~~G~~d~i~vs~~~~~~~~~~~~~~~~~~~~~a~~i~~~~~~pvi~~G~i~~~~~Ae~~l~~g~aD 313 (363)
T COG1902 234 LTIEEAVELAKALEEAGLVDYIHVSEGGYERGGTITVSGPGYQVEFAARIKKAVRIPVIAVGGINDPEQAEEILASGRAD 313 (363)
T ss_pred CCHHHHHHHHHHHHhcCCccEEEeecccccCCCCccccccchhHHHHHHHHHhcCCCEEEeCCCCCHHHHHHHHHcCCCC
Confidence 46777788888888888 5777776544322111111 224445455555 3356666666677888888888876 77
Q ss_pred eEecCCCc
Q 022946 197 AYNHNLDT 204 (289)
Q Consensus 197 ~v~i~let 204 (289)
-|.++=..
T Consensus 314 lVa~gR~~ 321 (363)
T COG1902 314 LVAMGRPF 321 (363)
T ss_pred EEEechhh
Confidence 77776443
No 358
>cd04735 OYE_like_4_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 4. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=79.73 E-value=12 Score=33.70 Aligned_cols=92 Identities=13% Similarity=0.102 Sum_probs=43.4
Q ss_pred CHHHHHHHHHHHHHcCCcEEEEecccCCCCC--CchhHHHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHcCCCeEec
Q 022946 123 TKDAVMQAAQKAKEAGSTRFCMGAAWRDTIG--RKTNFNQILEYVKDIRDMGMEVCCTLGMLEKHQAIELKKAGLTAYNH 200 (289)
Q Consensus 123 ~~eei~~~~~~~~~~g~~~i~i~~~~~~~~g--e~~~~~~l~e~i~~ik~~~~~i~~~~g~l~~e~l~~L~~aG~~~v~i 200 (289)
+.++.++.++.+.+.|++.+.+.++...... .+.....+.+.++......+.+..+.+..+.+.++++.+.|+|.|.+
T Consensus 233 ~~ee~~~i~~~L~~~GvD~I~Vs~g~~~~~~~~~~~~~~~~~~~ik~~~~~~iPVi~~Ggi~t~e~ae~~l~~gaD~V~~ 312 (353)
T cd04735 233 RMEDTLALVDKLADKGLDYLHISLWDFDRKSRRGRDDNQTIMELVKERIAGRLPLIAVGSINTPDDALEALETGADLVAI 312 (353)
T ss_pred CHHHHHHHHHHHHHcCCCEEEeccCccccccccCCcchHHHHHHHHHHhCCCCCEEEECCCCCHHHHHHHHHcCCChHHH
Confidence 4566666666666677776666543221100 00001122222222211244555555555666666666667766665
Q ss_pred CCCc-h-HHHHhccCC
Q 022946 201 NLDT-S-REFYSKIIT 214 (289)
Q Consensus 201 ~let-~-~~~~~~i~~ 214 (289)
+=-. . |+...++..
T Consensus 313 gR~liadPdl~~k~~~ 328 (353)
T cd04735 313 GRGLLVDPDWVEKIKE 328 (353)
T ss_pred hHHHHhCccHHHHHHc
Confidence 4322 1 444444433
No 359
>TIGR01108 oadA oxaloacetate decarboxylase alpha subunit. This model describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea. The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane.
Probab=79.59 E-value=23 Score=34.33 Aligned_cols=78 Identities=18% Similarity=0.273 Sum_probs=50.0
Q ss_pred CCHHHHHHHHHHHHHcCCcEEEEecccCCCCCCchhHHHHHHHHHHHH-hcC--ceEEEe--CCCCCHHHHHHHHHcCCC
Q 022946 122 MTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIR-DMG--MEVCCT--LGMLEKHQAIELKKAGLT 196 (289)
Q Consensus 122 ~~~eei~~~~~~~~~~g~~~i~i~~~~~~~~ge~~~~~~l~e~i~~ik-~~~--~~i~~~--~g~l~~e~l~~L~~aG~~ 196 (289)
.+++.+++.++.+.+.|++.|+|.. +.|- ..-..+.++++.++ ..+ +.++++ .|.-....+. -.++|++
T Consensus 146 ~~~~~~~~~~~~~~~~Gad~I~i~D----t~G~-~~P~~v~~lv~~lk~~~~~pi~~H~Hnt~Gla~An~la-AveaGa~ 219 (582)
T TIGR01108 146 HTLETYLDLAEELLEMGVDSICIKD----MAGI-LTPKAAYELVSALKKRFGLPVHLHSHATTGMAEMALLK-AIEAGAD 219 (582)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEECC----CCCC-cCHHHHHHHHHHHHHhCCCceEEEecCCCCcHHHHHHH-HHHhCCC
Confidence 3778999999999999999999854 1221 12245666666666 233 334443 4543344444 4478999
Q ss_pred eEecCCCch
Q 022946 197 AYNHNLDTS 205 (289)
Q Consensus 197 ~v~i~let~ 205 (289)
.|..++.+.
T Consensus 220 ~vd~ai~Gl 228 (582)
T TIGR01108 220 GIDTAISSM 228 (582)
T ss_pred EEEeccccc
Confidence 999888764
No 360
>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF). Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.
Probab=79.42 E-value=13 Score=31.36 Aligned_cols=73 Identities=16% Similarity=0.194 Sum_probs=47.8
Q ss_pred HHHHHHHHHHHHcCCcEEEEecccCCCCCCchhHHHHHHHHHHHH-hcCceEEEeCCCCCHHHHHHHHHc-CCCeEecC
Q 022946 125 DAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIR-DMGMEVCCTLGMLEKHQAIELKKA-GLTAYNHN 201 (289)
Q Consensus 125 eei~~~~~~~~~~g~~~i~i~~~~~~~~ge~~~~~~l~e~i~~ik-~~~~~i~~~~g~l~~e~l~~L~~a-G~~~v~i~ 201 (289)
++..+.++.+.+.|++.+.+.+-......+... .++++.++ ..++++..+.|..+.+.+.++.+. |++.+.++
T Consensus 149 ~~~~~~~~~l~~~G~d~i~v~~i~~~g~~~g~~----~~~i~~i~~~~~~pvia~GGi~~~~di~~~l~~~g~dgv~vg 223 (243)
T cd04731 149 LDAVEWAKEVEELGAGEILLTSMDRDGTKKGYD----LELIRAVSSAVNIPVIASGGAGKPEHFVEAFEEGGADAALAA 223 (243)
T ss_pred CCHHHHHHHHHHCCCCEEEEeccCCCCCCCCCC----HHHHHHHHhhCCCCEEEeCCCCCHHHHHHHHHhCCCCEEEEe
Confidence 444566667778899998886532211111122 34445444 347888888888889888887776 89988875
No 361
>cd02932 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN binding domain. YqjM is involved in the oxidative stress response of Bacillus subtilis. Like the other OYE members, each monomer of YqjM contains FMN as a non-covalently bound cofactor and uses NADPH as a reducing agent. The YqjM enzyme exists as a homotetramer that is assembled as a dimer of catalytically dependent dimers, while other OYE members exist only as monomers or dimers. Moreover, the protein displays a shared active site architecture where an arginine finger at the COOH terminus of one monomer extends into the active site of the adjacent monomer and is directly involved in substrate recognition. Another remarkable difference in the binding of the ligand in YqjM is represented by the contribution of the NH2-terminal tyrosine instead of a COOH-terminal tyrosine in OYE and its homologs.
Probab=79.20 E-value=13 Score=33.18 Aligned_cols=30 Identities=17% Similarity=0.147 Sum_probs=15.1
Q ss_pred CceEEEeCCCCCHHHHHHHHHcC-CCeEecC
Q 022946 172 GMEVCCTLGMLEKHQAIELKKAG-LTAYNHN 201 (289)
Q Consensus 172 ~~~i~~~~g~l~~e~l~~L~~aG-~~~v~i~ 201 (289)
.+.+....+..+.+.++++.+.| +|.|.++
T Consensus 290 ~iPVi~~G~i~t~~~a~~~l~~g~aD~V~~g 320 (336)
T cd02932 290 GIPVIAVGLITDPEQAEAILESGRADLVALG 320 (336)
T ss_pred CCCEEEeCCCCCHHHHHHHHHcCCCCeehhh
Confidence 44444444444555555555554 5555443
No 362
>PRK05848 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=79.17 E-value=16 Score=31.66 Aligned_cols=45 Identities=13% Similarity=0.067 Sum_probs=32.8
Q ss_pred hHHHHHHHHHHHHh--cCceEEEeCCCCCHHHHHHHHHcCCCeEecCC
Q 022946 157 NFNQILEYVKDIRD--MGMEVCCTLGMLEKHQAIELKKAGLTAYNHNL 202 (289)
Q Consensus 157 ~~~~l~e~i~~ik~--~~~~i~~~~g~l~~e~l~~L~~aG~~~v~i~l 202 (289)
..+.+.++++.++. .++.+..+.| ++.+.+.++.+.|+|.|++|-
T Consensus 212 ~~e~l~~~v~~~~~~~~~~~ieAsGg-It~~ni~~ya~~GvD~IsvG~ 258 (273)
T PRK05848 212 SVEEIKEVVAYRNANYPHVLLEASGN-ITLENINAYAKSGVDAISSGS 258 (273)
T ss_pred CHHHHHHHHHHhhccCCCeEEEEECC-CCHHHHHHHHHcCCCEEEeCh
Confidence 44667777765543 2344666666 499999999999999999875
No 363
>PF03102 NeuB: NeuB family; InterPro: IPR013132 NeuB is the prokaryotic N-acetylneuraminic acid synthase (Neu5Ac). It catalyses the direct formation of Neu5Ac (the most common sialic acid) by condensation of phosphoenolpyruvate (PEP) and N-acetylmannosamine (ManNAc). This reaction has only been observed in prokaryotes; eukaryotes synthesise the 9-phosphate form, Neu5Ac-9-P, and utilise ManNAc-6-P instead of ManNAc. Such eukaryotic enzymes are not present in this family []. This family also contains SpsE spore coat polysaccharide biosynthesis proteins.; GO: 0016051 carbohydrate biosynthetic process; PDB: 3G8R_B 1XUU_A 1XUZ_A 3CM4_A 2ZDR_A 1VLI_A 2WQP_A.
Probab=79.16 E-value=19 Score=30.61 Aligned_cols=40 Identities=20% Similarity=0.346 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHcCCCeEec
Q 022946 159 NQILEYVKDIRDMGMEVCCTLGMLEKHQAIELKKAGLTAYNH 200 (289)
Q Consensus 159 ~~l~e~i~~ik~~~~~i~~~~g~l~~e~l~~L~~aG~~~v~i 200 (289)
++..++.+..++.|+.+.+|. ++.+.++.|.+.|+..+-+
T Consensus 56 e~~~~L~~~~~~~gi~f~stp--fd~~s~d~l~~~~~~~~KI 95 (241)
T PF03102_consen 56 EQHKELFEYCKELGIDFFSTP--FDEESVDFLEELGVPAYKI 95 (241)
T ss_dssp HHHHHHHHHHHHTT-EEEEEE---SHHHHHHHHHHT-SEEEE
T ss_pred HHHHHHHHHHHHcCCEEEECC--CCHHHHHHHHHcCCCEEEe
Confidence 555566666667788777665 5678888888888887776
No 364
>COG1856 Uncharacterized homolog of biotin synthetase [Function unknown]
Probab=79.05 E-value=37 Score=28.48 Aligned_cols=107 Identities=14% Similarity=0.038 Sum_probs=61.0
Q ss_pred hHHHHHHHHHHHHhcCceE--EEeC----CCC--CHHHHHHHHHcCCCeEecCCCch-HHHHhccCCCCCHHHHHHHHHH
Q 022946 157 NFNQILEYVKDIRDMGMEV--CCTL----GML--EKHQAIELKKAGLTAYNHNLDTS-REFYSKIITTRSYDERLETLKH 227 (289)
Q Consensus 157 ~~~~l~e~i~~ik~~~~~i--~~~~----g~l--~~e~l~~L~~aG~~~v~i~let~-~~~~~~i~~~~~~~~~~~~i~~ 227 (289)
..+++...++.+++.++.+ +++. |-+ ..+.++.|.+...|.+-+.+=.. +-+--...++.+.++.+++++.
T Consensus 134 sv~dyl~~l~~L~e~~irvvpHitiGL~~gki~~e~kaIdiL~~~~~DalVl~vliPtpGtkm~~~~pp~~eE~i~v~~~ 213 (275)
T COG1856 134 SVEDYLRSLLLLKENGIRVVPHITIGLDFGKIHGEFKAIDILVNYEPDALVLVVLIPTPGTKMGNSPPPPVEEAIKVVKY 213 (275)
T ss_pred cHHHHHHHHHHHHHcCceeceeEEEEeccCcccchHHHHHHHhcCCCCeEEEEEEecCCchhccCCCCcCHHHHHHHHHH
Confidence 3456666667777777664 3333 322 45567888888888776543222 2221222345689999999999
Q ss_pred HHHcCC-ceeecEEeecCCCHHHHHHHHHHHhcCCCCCCeee
Q 022946 228 VREAGI-NVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVP 268 (289)
Q Consensus 228 ~~~~Gi-~v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~ 268 (289)
|++.=- ++..+-+--.|+..-.+ =.++... +++.+.
T Consensus 214 AR~~f~~pv~iGCmrP~Ge~rvk~---d~~av~~--gVd~It 250 (275)
T COG1856 214 ARKKFPNPVSIGCMRPRGEWRVKL---DKEAVLA--GVDRIT 250 (275)
T ss_pred HHHhCCCCeeEeecCcCchhHHHH---HHHHHHc--CCceee
Confidence 999532 45444443336554443 3344444 345544
No 365
>TIGR00736 nifR3_rel_arch TIM-barrel protein, putative. Members of this family show a distant relationship by PSI-BLAST to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. At least two closely related but well-separable families among the bacteria, the nifR3/yhdG family and the yjbN family, share a more distant relationship to this family of shorter, exclusively archaeal proteins.
Probab=78.91 E-value=19 Score=30.42 Aligned_cols=71 Identities=14% Similarity=0.089 Sum_probs=48.1
Q ss_pred HHHHHHHHHHHHcCCcEEEEecccCCCCCCchhHHHHHHHHHHHHh-c-CceEEEeCCCCCHHHHHHHHHcCCCeEecC
Q 022946 125 DAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRD-M-GMEVCCTLGMLEKHQAIELKKAGLTAYNHN 201 (289)
Q Consensus 125 eei~~~~~~~~~~g~~~i~i~~~~~~~~ge~~~~~~l~e~i~~ik~-~-~~~i~~~~g~l~~e~l~~L~~aG~~~v~i~ 201 (289)
++.++.++.+.+.|++.+++-. ..+ |.+. --++.++.+++ . .+.+..+.|..+.+.+.++.++|++.|.++
T Consensus 148 ~~~~~~a~~l~~aGad~i~Vd~--~~~-g~~~---a~~~~I~~i~~~~~~ipIIgNGgI~s~eda~e~l~~GAd~Vmvg 220 (231)
T TIGR00736 148 LDELIDALNLVDDGFDGIHVDA--MYP-GKPY---ADMDLLKILSEEFNDKIIIGNNSIDDIESAKEMLKAGADFVSVA 220 (231)
T ss_pred chHHHHHHHHHHcCCCEEEEee--CCC-CCch---hhHHHHHHHHHhcCCCcEEEECCcCCHHHHHHHHHhCCCeEEEc
Confidence 4556677777888988888743 112 2221 12455566663 3 377888888888888888888999988875
No 366
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=78.56 E-value=22 Score=33.22 Aligned_cols=128 Identities=16% Similarity=0.185 Sum_probs=75.0
Q ss_pred HHHHHHHHHHHHcCCcEEEEecccCCCCCCchhHHHHHHHHHHHHhc--CceEEEeCCCCCHHHHHHHHHcCCCeEecCC
Q 022946 125 DAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDM--GMEVCCTLGMLEKHQAIELKKAGLTAYNHNL 202 (289)
Q Consensus 125 eei~~~~~~~~~~g~~~i~i~~~~~~~~ge~~~~~~l~e~i~~ik~~--~~~i~~~~g~l~~e~l~~L~~aG~~~v~i~l 202 (289)
++-.+.++.+.+.|++-|.+.... | +-....+.++.+++. .+.+.. .+..+.+.++.+.++|+|.|.+++
T Consensus 223 ~~~~~r~~~L~~aG~d~I~vd~a~----g---~~~~~~~~i~~i~~~~~~~~vi~-G~v~t~~~a~~l~~aGad~i~vg~ 294 (450)
T TIGR01302 223 EFDKERAEALVKAGVDVIVIDSSH----G---HSIYVIDSIKEIKKTYPDLDIIA-GNVATAEQAKALIDAGADGLRVGI 294 (450)
T ss_pred hhHHHHHHHHHHhCCCEEEEECCC----C---cHhHHHHHHHHHHHhCCCCCEEE-EeCCCHHHHHHHHHhCCCEEEECC
Confidence 345666777888899988875421 2 335688888888854 344444 235889999999999999998775
Q ss_pred Cch-HHHHhccCC-C-CCHHHHHHHHHHHHHcCCceeecEEe--ecCCCHHHHHHHHHHHhcCCCCCCeeeecc
Q 022946 203 DTS-REFYSKIIT-T-RSYDERLETLKHVREAGINVCSGGII--GLGEAEEDRVGLLHTLATLPTHPESVPINA 271 (289)
Q Consensus 203 et~-~~~~~~i~~-~-~~~~~~~~~i~~~~~~Gi~v~~~~i~--Glget~ed~~~~l~~l~~l~~~~~~v~i~~ 271 (289)
-.. -..-+.+.. + ..+..+.+..+.+++.|+++ |. | -.+..|+...+. + +.+.|.+..
T Consensus 295 g~G~~~~t~~~~~~g~p~~~~i~~~~~~~~~~~vpv----iadGG-i~~~~di~kAla----~--GA~~V~~G~ 357 (450)
T TIGR01302 295 GPGSICTTRIVAGVGVPQITAVYDVAEYAAQSGIPV----IADGG-IRYSGDIVKALA----A--GADAVMLGS 357 (450)
T ss_pred CCCcCCccceecCCCccHHHHHHHHHHHHhhcCCeE----EEeCC-CCCHHHHHHHHH----c--CCCEEEECc
Confidence 221 111111111 1 13455555666666677664 33 2 234566655544 3 345555443
No 367
>PF14871 GHL6: Hypothetical glycosyl hydrolase 6
Probab=78.56 E-value=4.2 Score=31.08 Aligned_cols=60 Identities=15% Similarity=-0.048 Sum_probs=42.8
Q ss_pred HHHHHHHHHcCCCeEecCCC-----ch-HHHHhccCCCCCHHHHHHHHHHHHHcCCceeecEEeec
Q 022946 184 KHQAIELKKAGLTAYNHNLD-----TS-REFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGL 243 (289)
Q Consensus 184 ~e~l~~L~~aG~~~v~i~le-----t~-~~~~~~i~~~~~~~~~~~~i~~~~~~Gi~v~~~~i~Gl 243 (289)
++.++.|+++|++.+.+... +. |-......+.-..+-.-+.++.+++.||.|-+.+-++.
T Consensus 3 ~~~~~~lk~~~v~si~i~a~~h~g~ayYPt~~~~~hp~L~~Dllge~v~a~h~~Girv~ay~~~~~ 68 (132)
T PF14871_consen 3 EQFVDTLKEAHVNSITIFAKCHGGYAYYPTKVGPRHPGLKRDLLGEQVEACHERGIRVPAYFDFSW 68 (132)
T ss_pred HHHHHHHHHhCCCEEEEEcccccEEEEccCCCCcCCCCCCcCHHHHHHHHHHHCCCEEEEEEeeec
Confidence 45679999999999988544 23 32223334444556678899999999999887777763
No 368
>PRK10425 DNase TatD; Provisional
Probab=78.54 E-value=2 Score=36.85 Aligned_cols=48 Identities=8% Similarity=-0.025 Sum_probs=38.5
Q ss_pred CCcccc-ccc----cccccccchHHHHHHHHHhcCCCCCCCHHHHHHhhCCChHHH
Q 022946 19 SKKFLA-LHS----SCSCYSASAAAIEAERTIREGPRHDWSKDDIKSIYDSPVLDL 69 (289)
Q Consensus 19 ~~~~~~-~~~----~~~~~~~~~~~~~~~~~~~~~~~~~ls~ee~~~l~~~~~~~l 69 (289)
-+||++ .|. ++.+|.|.++..+++.+++ ..+++.+|+...+..+...+
T Consensus 203 DaP~l~P~~~~~~~~~~~n~P~~i~~v~~~iA~---l~~~~~~~v~~~~~~N~~~l 255 (258)
T PRK10425 203 DAPYLLPRDLTPKPASRRNEPAFLPHILQRIAH---WRGEDAAWLAATTDANARTL 255 (258)
T ss_pred cCCCCCCCCcCCCCCCCCCCcHHHHHHHHHHHH---HHCcCHHHHHHHHHHHHHHH
Confidence 489998 455 4678999999999999999 88999999887765554443
No 369
>TIGR00677 fadh2_euk methylenetetrahydrofolate reductase, eukaryotic type. This protein is an FAD-containing flavoprotein.
Probab=78.51 E-value=44 Score=29.06 Aligned_cols=48 Identities=21% Similarity=0.228 Sum_probs=32.7
Q ss_pred CHHHHHHHHHHHHHcCCcEEEEecccCCCCCC-----chhHHHHHHHHHHHHh
Q 022946 123 TKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGR-----KTNFNQILEYVKDIRD 170 (289)
Q Consensus 123 ~~eei~~~~~~~~~~g~~~i~i~~~~~~~~ge-----~~~~~~l~e~i~~ik~ 170 (289)
+.+++.+.+..+.+.|++.+...+|+....+. +..++...++++.+++
T Consensus 72 ~~~~l~~~L~~~~~~Gi~niLal~GD~p~~~~~~~~~~~~f~~a~~Li~~i~~ 124 (281)
T TIGR00677 72 PIEMIDDALERAYSNGIQNILALRGDPPHIGDDWTEVEGGFQYAVDLVKYIRS 124 (281)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCcCHHHHHHHHHH
Confidence 44788888888889999999766655433221 1345567778877764
No 370
>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS). KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.
Probab=78.42 E-value=34 Score=27.70 Aligned_cols=93 Identities=14% Similarity=0.099 Sum_probs=54.3
Q ss_pred CCHHHHHHHHHHHHHcCCcEEEEecccCCCCCCchhHHHHHHHHHHHHhc--CceEEEe--CCCCCHHHHHHHHHcCCCe
Q 022946 122 MTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDM--GMEVCCT--LGMLEKHQAIELKKAGLTA 197 (289)
Q Consensus 122 ~~~eei~~~~~~~~~~g~~~i~i~~~~~~~~ge~~~~~~l~e~i~~ik~~--~~~i~~~--~g~l~~e~l~~L~~aG~~~ 197 (289)
.+.|+..+.++.+.+. ++.+-++. +.....=.+.++.+++. ++.+... ........++.+.++|.+.
T Consensus 10 ~~~~~~~~~~~~l~~~-i~~ieig~--------~~~~~~g~~~i~~i~~~~~~~~i~~~~~v~~~~~~~~~~~~~aGad~ 80 (202)
T cd04726 10 LDLEEALELAKKVPDG-VDIIEAGT--------PLIKSEGMEAVRALREAFPDKIIVADLKTADAGALEAEMAFKAGADI 80 (202)
T ss_pred CCHHHHHHHHHHhhhc-CCEEEcCC--------HHHHHhCHHHHHHHHHHCCCCEEEEEEEeccccHHHHHHHHhcCCCE
Confidence 5788888888888877 77765532 21222224556666543 4444322 1122345678999999999
Q ss_pred EecCCCchHHHHhccCCCCCHHHHHHHHHHHHHcCCce
Q 022946 198 YNHNLDTSREFYSKIITTRSYDERLETLKHVREAGINV 235 (289)
Q Consensus 198 v~i~let~~~~~~~i~~~~~~~~~~~~i~~~~~~Gi~v 235 (289)
+.+..++. .+...+.++.+++.|+.+
T Consensus 81 i~~h~~~~------------~~~~~~~i~~~~~~g~~~ 106 (202)
T cd04726 81 VTVLGAAP------------LSTIKKAVKAAKKYGKEV 106 (202)
T ss_pred EEEEeeCC------------HHHHHHHHHHHHHcCCeE
Confidence 98766542 123344555666666543
No 371
>PLN03228 methylthioalkylmalate synthase; Provisional
Probab=78.07 E-value=32 Score=32.66 Aligned_cols=67 Identities=24% Similarity=0.308 Sum_probs=34.6
Q ss_pred CCHHHHHHHH----HHHHHcCCcEEEEecccCCCCCCchhHHHHHHHHHHHHhcCce---EEEeCCCCCHHHHHHHHH
Q 022946 122 MTKDAVMQAA----QKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMGME---VCCTLGMLEKHQAIELKK 192 (289)
Q Consensus 122 ~~~eei~~~~----~~~~~~g~~~i~i~~~~~~~~ge~~~~~~l~e~i~~ik~~~~~---i~~~~g~l~~e~l~~L~~ 192 (289)
++.+++++.+ +.+++.|...+.|..- + .+ ....++++++++.+.+.|.. +.-|.|.++++.+.++.+
T Consensus 202 ~s~ee~l~~~~~~V~~Ak~~G~~~v~f~~E--D-a~-Rtd~efl~~~~~~a~~~Gad~I~l~DTvG~~tP~~v~~lV~ 275 (503)
T PLN03228 202 KTKEEVIEMAVSSIRYAKSLGFHDIQFGCE--D-GG-RSDKEFLCKILGEAIKAGATSVGIADTVGINMPHEFGELVT 275 (503)
T ss_pred CCHHHHHHHHHHHHHHHHHcCCceEEeccc--c-cc-ccCHHHHHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHH
Confidence 4555555443 4455566654444331 1 11 33456667777666655433 345567766665544443
No 372
>PRK13587 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=78.02 E-value=23 Score=29.85 Aligned_cols=74 Identities=12% Similarity=0.060 Sum_probs=46.6
Q ss_pred CCHHHHHHHHHHHHHcCCcEEEEecccCCCCCCchhHHHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHcCCCeEecC
Q 022946 122 MTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMGMEVCCTLGMLEKHQAIELKKAGLTAYNHN 201 (289)
Q Consensus 122 ~~~eei~~~~~~~~~~g~~~i~i~~~~~~~~ge~~~~~~l~e~i~~ik~~~~~i~~~~g~l~~e~l~~L~~aG~~~v~i~ 201 (289)
.++.++++ .+.+.|+.++.++.-+.+-...-..++-+.++.+ ..++++....|.-+.+.+..+.++|++.+.+|
T Consensus 148 ~~~~~~~~---~~~~~g~~~ii~tdi~~dGt~~G~~~~li~~l~~---~~~ipvi~~GGi~s~edi~~l~~~G~~~vivG 221 (234)
T PRK13587 148 LNLFSFVR---QLSDIPLGGIIYTDIAKDGKMSGPNFELTGQLVK---ATTIPVIASGGIRHQQDIQRLASLNVHAAIIG 221 (234)
T ss_pred CCHHHHHH---HHHHcCCCEEEEecccCcCCCCccCHHHHHHHHH---hCCCCEEEeCCCCCHHHHHHHHHcCCCEEEEh
Confidence 45555554 4457888888775532211111123332333322 24678888889999999999999999998876
No 373
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=77.99 E-value=17 Score=30.83 Aligned_cols=23 Identities=22% Similarity=0.411 Sum_probs=14.4
Q ss_pred CHHHHHHHHHHHHHcCCcEEEEe
Q 022946 123 TKDAVMQAAQKAKEAGSTRFCMG 145 (289)
Q Consensus 123 ~~eei~~~~~~~~~~g~~~i~i~ 145 (289)
+++++.+.++.+.+.|++.|.+.
T Consensus 144 ~~~~l~~~~~~~~~~g~~~i~l~ 166 (265)
T cd03174 144 DPEYVLEVAKALEEAGADEISLK 166 (265)
T ss_pred CHHHHHHHHHHHHHcCCCEEEec
Confidence 55666666666666666666653
No 374
>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=77.90 E-value=13 Score=31.00 Aligned_cols=68 Identities=18% Similarity=0.107 Sum_probs=46.0
Q ss_pred CCHHHHHHHHHHHHHcCCcEEEEecccCCCCCCchhHHHHHHHHHHHHhcCceEEEeCC-CCCHHHHHHHHHcCCCeEe
Q 022946 122 MTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMGMEVCCTLG-MLEKHQAIELKKAGLTAYN 199 (289)
Q Consensus 122 ~~~eei~~~~~~~~~~g~~~i~i~~~~~~~~ge~~~~~~l~e~i~~ik~~~~~i~~~~g-~l~~e~l~~L~~aG~~~v~ 199 (289)
.+.++.++.++.+.+.|++.+.++- .. ++-.+.++.+++...++.+-.| .++.+.++...++|.+.+.
T Consensus 24 ~~~~~a~~i~~al~~~Gi~~iEitl--~~--------~~~~~~I~~l~~~~p~~~IGAGTVl~~~~a~~a~~aGA~Fiv 92 (212)
T PRK05718 24 NKLEDAVPLAKALVAGGLPVLEVTL--RT--------PAALEAIRLIAKEVPEALIGAGTVLNPEQLAQAIEAGAQFIV 92 (212)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEec--CC--------ccHHHHHHHHHHHCCCCEEEEeeccCHHHHHHHHHcCCCEEE
Confidence 5889999999999999999887752 11 2344555555532223333334 3778888889999987665
No 375
>smart00642 Aamy Alpha-amylase domain.
Probab=77.74 E-value=6.7 Score=31.20 Aligned_cols=28 Identities=18% Similarity=0.220 Sum_probs=25.3
Q ss_pred CCHHHHHHHHHHHHHcCCceeecEEeec
Q 022946 216 RSYDERLETLKHVREAGINVCSGGIIGL 243 (289)
Q Consensus 216 ~~~~~~~~~i~~~~~~Gi~v~~~~i~Gl 243 (289)
.+.++..+.++.+|+.|+.|..++++.+
T Consensus 67 Gt~~d~~~lv~~~h~~Gi~vilD~V~NH 94 (166)
T smart00642 67 GTMEDFKELVDAAHARGIKVILDVVINH 94 (166)
T ss_pred CCHHHHHHHHHHHHHCCCEEEEEECCCC
Confidence 4679999999999999999999999877
No 376
>PF06180 CbiK: Cobalt chelatase (CbiK); InterPro: IPR010388 This group, typified by Salmonella typhimurium CbiK, contains anaerobic cobalt chelatases that act in the anaerobic cobalamin biosynthesis pathway [, ]. Cobalamin (vitamin B12) can be complexed with metal via ATP-dependent reactions (aerobic pathway) (e.g., in Pseudomonas denitrificans) or via ATP-independent reactions (anaerobic pathway) (e.g., in S. typhimurium) [, ]. The corresponding cobalt chelatases are not homologous. This group belongs to the class of ATP-independent, single-subunit chelatases that also includes distantly related protoporphyrin IX (PPIX) ferrochelatase (HemH) (Class II chelatases) []. The structure of S. typhimurium CbiK shows that it has a remarkably similar topology to Bacillus subtilis ferrochelatase despite only weak sequence conservation []. Both enzymes contain a histidine residue identified as the metal ion ligand, but CbiK contains a second histidine in place of the glutamic acid residue identified as a general base in PPIX ferrochelatase []. Site-directed mutagenesis has confirmed a role for this histidine and a nearby glutamic acid in cobalt binding, modulating metal ion specificity as well as catalytic efficiency []. It should be noted that CysG and Met8p, which are multifunctional proteins associated with siroheme biosynthesis, include chelatase activity and can therefore be considered as the third class of chelatases []. As with the class II chelatases, they do not require ATP for activity. However, they are not structurally similar to HemH or CbiK, and it is likely that they have arisen by the acquisition of a chelatase function within a dehydrogenase catalytic framework [, ].; GO: 0016852 sirohydrochlorin cobaltochelatase activity; PDB: 1QGO_A 2XWP_A 2XVZ_A 2XVX_A 2XVY_A.
Probab=77.56 E-value=11 Score=32.36 Aligned_cols=147 Identities=13% Similarity=0.110 Sum_probs=65.7
Q ss_pred HHHHHHHHHHHHHcCCcEEEEecccCCCCCCchhHHHHHHHHHHHHhcCceEEEeCCCCC-------HHHHHHHHHcCCC
Q 022946 124 KDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMGMEVCCTLGMLE-------KHQAIELKKAGLT 196 (289)
Q Consensus 124 ~eei~~~~~~~~~~g~~~i~i~~~~~~~~ge~~~~~~l~e~i~~ik~~~~~i~~~~g~l~-------~e~l~~L~~aG~~ 196 (289)
++.+.+.+..+.+.|+++|+++.--- ..| ..++.+.+.++..+...-.+....-.|. .+.++.+.++=.+
T Consensus 57 i~~~~eaL~~L~~~G~~~V~VQplhi-ipG--~Ey~~l~~~v~~~~~~F~~i~~g~PLL~~~g~~~~~~D~~~va~aL~~ 133 (262)
T PF06180_consen 57 IDSPEEALAKLADEGYTEVVVQPLHI-IPG--EEYEKLRATVEAYKHDFKKIVLGRPLLYTMGQENSPEDYEAVAEALAE 133 (262)
T ss_dssp ---HHHHHHHHHHCT--EEEEEE--S-CSS--HHHHHHHHHHHHHCCCSSEEEEE--SCSS-----SHHHHHHHHHHHHC
T ss_pred cCCHHHHHHHHHHCCCCEEEEeecce-eCc--HhHHHHHHHHHHhhccCCeEEecccccccccccCChHHHHHHHHHHHH
Confidence 34445555667799999999986322 224 2667777777665532223433322233 5555555554111
Q ss_pred eEecCCCchHHHHhccCCCCCHHHHHHHHHH-HHHcCCceeecEEeecCCCHHHHHHHHHHHhcCCCCCCeeeeccceec
Q 022946 197 AYNHNLDTSREFYSKIITTRSYDERLETLKH-VREAGINVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLAV 275 (289)
Q Consensus 197 ~v~i~let~~~~~~~i~~~~~~~~~~~~i~~-~~~~Gi~v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~i~~~~p~ 275 (289)
.+.-.-+...-++-.....+.-......++. +++.|.. .+.+|.-|..-++.+.+..|++- +...|.+.+|+-.
T Consensus 134 ~~~~~~~~~a~vlmGHGt~h~an~~Y~~l~~~l~~~~~~---~v~vgtvEG~P~~~~vi~~L~~~--g~k~V~L~PlMlV 208 (262)
T PF06180_consen 134 EFPKKRKDEAVVLMGHGTPHPANAAYSALQAMLKKHGYP---NVFVGTVEGYPSLEDVIARLKKK--GIKKVHLIPLMLV 208 (262)
T ss_dssp CS-TT-TTEEEEEEE---SCHHHHHHHHHHHHHHCCT-T---TEEEEETTSSSBHHHHHHHHHHH--T-SEEEEEEESSS
T ss_pred hccccCCCCEEEEEeCCCCCCccHHHHHHHHHHHhCCCC---eEEEEEeCCCCCHHHHHHHHHhc--CCCeEEEEecccc
Confidence 1110000000011111112222334444444 4445532 23555523233466777777766 5778999998876
Q ss_pred CCC
Q 022946 276 KGT 278 (289)
Q Consensus 276 pgT 278 (289)
.|.
T Consensus 209 AGd 211 (262)
T PF06180_consen 209 AGD 211 (262)
T ss_dssp --H
T ss_pred cch
Confidence 654
No 377
>PRK08745 ribulose-phosphate 3-epimerase; Provisional
Probab=77.51 E-value=41 Score=28.17 Aligned_cols=72 Identities=13% Similarity=0.100 Sum_probs=45.3
Q ss_pred CHHHHHHHHHHHHHcCCcEEEEecccCCCCCCchhHHHHHHHHHHHHhc----C--ceEEEeCCCCCHHHHHHHHHcCCC
Q 022946 123 TKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDM----G--MEVCCTLGMLEKHQAIELKKAGLT 196 (289)
Q Consensus 123 ~~eei~~~~~~~~~~g~~~i~i~~~~~~~~ge~~~~~~l~e~i~~ik~~----~--~~i~~~~g~l~~e~l~~L~~aG~~ 196 (289)
+.+.+...+. -++.|.+.+....++| ..+.+..++-++.+++. + +.+.+..| ++.+.+..+.++|+|
T Consensus 122 ~~~~i~~~l~-----~vD~VlvMtV~PGf~G-Q~fi~~~l~KI~~l~~~~~~~~~~~~IeVDGG-I~~eti~~l~~aGaD 194 (223)
T PRK08745 122 PVDILDWVLP-----ELDLVLVMSVNPGFGG-QAFIPSALDKLRAIRKKIDALGKPIRLEIDGG-VKADNIGAIAAAGAD 194 (223)
T ss_pred CHHHHHHHHh-----hcCEEEEEEECCCCCC-ccccHHHHHHHHHHHHHHHhcCCCeeEEEECC-CCHHHHHHHHHcCCC
Confidence 4555544433 2456666554444434 44666666666666532 4 34555555 789999999999999
Q ss_pred eEecC
Q 022946 197 AYNHN 201 (289)
Q Consensus 197 ~v~i~ 201 (289)
.+-.|
T Consensus 195 i~V~G 199 (223)
T PRK08745 195 TFVAG 199 (223)
T ss_pred EEEEC
Confidence 88876
No 378
>TIGR00737 nifR3_yhdG putative TIM-barrel protein, nifR3 family. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=77.49 E-value=21 Score=31.59 Aligned_cols=83 Identities=18% Similarity=0.120 Sum_probs=50.2
Q ss_pred HHHHHHcCCCeEecCCCch-HHHHhccCCC---CCHHHHHHHHHHHHH-cCCceeecEEeecCCCHHHHHHHHHHHhcCC
Q 022946 187 AIELKKAGLTAYNHNLDTS-REFYSKIITT---RSYDERLETLKHVRE-AGINVCSGGIIGLGEAEEDRVGLLHTLATLP 261 (289)
Q Consensus 187 l~~L~~aG~~~v~i~let~-~~~~~~i~~~---~~~~~~~~~i~~~~~-~Gi~v~~~~i~Glget~ed~~~~l~~l~~l~ 261 (289)
++.+.++|+|.|.+++-.. ...-++-.+. ...+...+.++.+++ .++++..-+-.|..++..+..+.+..+.+.
T Consensus 81 a~~~~~~G~d~IelN~gcP~~~~~~~~~Gs~l~~~~~~~~ei~~~vr~~~~~pv~vKir~g~~~~~~~~~~~a~~l~~~- 159 (319)
T TIGR00737 81 AKINEELGADIIDINMGCPVPKITKKGAGSALLRDPDLIGKIVKAVVDAVDIPVTVKIRIGWDDAHINAVEAARIAEDA- 159 (319)
T ss_pred HHHHHhCCCCEEEEECCCCHHHhcCCCccchHhCCHHHHHHHHHHHHhhcCCCEEEEEEcccCCCcchHHHHHHHHHHh-
Confidence 4566678889888877554 3222221111 235666677777665 467766665566644444566777777777
Q ss_pred CCCCeeeecc
Q 022946 262 THPESVPINA 271 (289)
Q Consensus 262 ~~~~~v~i~~ 271 (289)
+.+.+.++.
T Consensus 160 -G~d~i~vh~ 168 (319)
T TIGR00737 160 -GAQAVTLHG 168 (319)
T ss_pred -CCCEEEEEc
Confidence 467777654
No 379
>PRK09432 metF 5,10-methylenetetrahydrofolate reductase; Provisional
Probab=77.47 E-value=48 Score=29.09 Aligned_cols=30 Identities=13% Similarity=-0.025 Sum_probs=24.2
Q ss_pred CCHHHHHHHHHHHHHcCCcEEEEecccCCC
Q 022946 122 MTKDAVMQAAQKAKEAGSTRFCMGAAWRDT 151 (289)
Q Consensus 122 ~~~eei~~~~~~~~~~g~~~i~i~~~~~~~ 151 (289)
.+.+++...+..+.+.|++.|...+|+...
T Consensus 94 ~n~~~l~~~L~~~~~~GI~niLaLrGD~p~ 123 (296)
T PRK09432 94 ATPDELRTIAKDYWNNGIRHIVALRGDLPP 123 (296)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEeCCCCCC
Confidence 477888988889999999999877766443
No 380
>COG3623 SgaU Putative L-xylulose-5-phosphate 3-epimerase [Carbohydrate transport and metabolism]
Probab=77.42 E-value=19 Score=30.33 Aligned_cols=54 Identities=22% Similarity=0.308 Sum_probs=28.6
Q ss_pred CCCCCHHHHHHHHHcCCCeEecCCCchHHHHhccCCCCCHHHHHHHHHHHHHcCCc
Q 022946 179 LGMLEKHQAIELKKAGLTAYNHNLDTSREFYSKIITTRSYDERLETLKHVREAGIN 234 (289)
Q Consensus 179 ~g~l~~e~l~~L~~aG~~~v~i~let~~~~~~~i~~~~~~~~~~~~i~~~~~~Gi~ 234 (289)
++..-.|.+..-|++|+|.|.+|+|-.++-+.++ .=+-++++..++.+.+.|+.
T Consensus 16 ~~~sW~erl~~AK~~GFDFvEmSvDEsDeRLaRL--DWs~~er~~l~~ai~etgv~ 69 (287)
T COG3623 16 NGFSWLERLALAKELGFDFVEMSVDESDERLARL--DWSKEERLALVNAIQETGVR 69 (287)
T ss_pred CCCCHHHHHHHHHHcCCCeEEEeccchHHHHHhc--CCCHHHHHHHHHHHHHhCCC
Confidence 3444455666666667776666666654333332 12344555555555555544
No 381
>PRK08091 ribulose-phosphate 3-epimerase; Validated
Probab=77.37 E-value=25 Score=29.57 Aligned_cols=72 Identities=13% Similarity=-0.023 Sum_probs=43.8
Q ss_pred CHHHHHHHHHHHHHcCCcEEEEecccCCCCCCchhHHHHHHHHHHHH----hcCce--EEEeCCCCCHHHHHHHHHcCCC
Q 022946 123 TKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIR----DMGME--VCCTLGMLEKHQAIELKKAGLT 196 (289)
Q Consensus 123 ~~eei~~~~~~~~~~g~~~i~i~~~~~~~~ge~~~~~~l~e~i~~ik----~~~~~--i~~~~g~l~~e~l~~L~~aG~~ 196 (289)
+.+.+...+. -++.|.+.+....++| ..+.+..++-+++++ +.+.+ +.+..| ++.+.+..+.++|+|
T Consensus 130 p~~~i~~~l~-----~vD~VLiMtV~PGfgG-Q~f~~~~l~KI~~lr~~~~~~~~~~~IeVDGG-I~~~ti~~l~~aGaD 202 (228)
T PRK08091 130 PISLLEPYLD-----QIDLIQILTLDPRTGT-KAPSDLILDRVIQVENRLGNRRVEKLISIDGS-MTLELASYLKQHQID 202 (228)
T ss_pred CHHHHHHHHh-----hcCEEEEEEECCCCCC-ccccHHHHHHHHHHHHHHHhcCCCceEEEECC-CCHHHHHHHHHCCCC
Confidence 4555544433 2456666554433334 345566666666555 33433 555544 789999999999999
Q ss_pred eEecC
Q 022946 197 AYNHN 201 (289)
Q Consensus 197 ~v~i~ 201 (289)
.+-.|
T Consensus 203 ~~V~G 207 (228)
T PRK08091 203 WVVSG 207 (228)
T ss_pred EEEEC
Confidence 88766
No 382
>COG3473 Maleate cis-trans isomerase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=77.21 E-value=26 Score=29.03 Aligned_cols=75 Identities=19% Similarity=0.231 Sum_probs=40.6
Q ss_pred CCCCHHHHHHH-------HHHHHHcCCcEEEEecccCCCCCCchhHHHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHH
Q 022946 120 KLMTKDAVMQA-------AQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMGMEVCCTLGMLEKHQAIELKK 192 (289)
Q Consensus 120 ~~~~~eei~~~-------~~~~~~~g~~~i~i~~~~~~~~ge~~~~~~l~e~i~~ik~~~~~i~~~~g~l~~e~l~~L~~ 192 (289)
+..++|++.+. +..+.+.+++-|..+.......+.+.+-.++...+++.+ ++++.++.+ ..++.|+.
T Consensus 42 ~~VT~EeL~~M~~~t~~aAl~Lada~vdvI~Y~CtsgS~i~G~~~d~ei~~~ie~~~--~v~vvTts~----Avv~aL~a 115 (238)
T COG3473 42 KNVTPEELLKMESYTERAALELADAGVDVIVYGCTSGSLIGGPGYDKEIAQRIEEAK--GVPVVTTST----AVVEALNA 115 (238)
T ss_pred ccCCHHHHHHHHHHHHHHHHhcCccccCEEEEeccceeeecCCchhHHHHHHHHhcc--CCceeechH----HHHHHHHh
Confidence 33567776542 223334577776653211122334555566666666554 666655443 34667777
Q ss_pred cCCCeEec
Q 022946 193 AGLTAYNH 200 (289)
Q Consensus 193 aG~~~v~i 200 (289)
.|..++++
T Consensus 116 l~a~ri~v 123 (238)
T COG3473 116 LGAQRISV 123 (238)
T ss_pred hCcceEEE
Confidence 77776664
No 383
>cd07940 DRE_TIM_IPMS 2-isopropylmalate synthase (IPMS), N-terminal catalytic TIM barrel domain. 2-isopropylmalate synthase (IPMS) catalyzes an aldol-type condensation of acetyl-CoA and 2-oxoisovalerate yielding 2-isopropylmalate and CoA, the first committed step in leucine biosynthesis. This family includes the Arabidopsis thaliana IPMS1 and IPMS2 proteins, the Glycine max GmN56 protein, and the Brassica insularis BatIMS protein. This family also includes a group of archeal IPMS-like proteins represented by the Methanocaldococcus jannaschii AksA protein. AksA catalyzes the condensation of alpha-ketoglutarate and acetyl-CoA to form trans-homoaconitate, one of 13 steps in the conversion of alpha-ketoglutarate and acetylCoA to alpha-ketosuberate, a precursor to coenzyme B and biotin. AksA also catalyzes the condensation of alpha-ketoadipate or alpha-ketopimelate with acetylCoA to form, respectively, the (R)-homocitrate homologs (R)-2-hydroxy-1,2,5-pentanetricarboxylic acid and (R)-2-h
Probab=77.15 E-value=8.7 Score=33.09 Aligned_cols=30 Identities=20% Similarity=0.326 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHhcCce---EEEeCCCCCHHHH
Q 022946 158 FNQILEYVKDIRDMGME---VCCTLGMLEKHQA 187 (289)
Q Consensus 158 ~~~l~e~i~~ik~~~~~---i~~~~g~l~~e~l 187 (289)
.+++.++++.+.+.|.. +.-+.|.++++.+
T Consensus 142 ~~~~~~~~~~~~~~G~~~i~l~DT~G~~~P~~v 174 (268)
T cd07940 142 LDFLIEVVEAAIEAGATTINIPDTVGYLTPEEF 174 (268)
T ss_pred HHHHHHHHHHHHHcCCCEEEECCCCCCCCHHHH
Confidence 34445555544444332 2233454444443
No 384
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=77.11 E-value=20 Score=31.24 Aligned_cols=78 Identities=18% Similarity=0.183 Sum_probs=51.6
Q ss_pred HHHHHHHHHHHHHcCCcEEEEecc--cC----------------CCCCCchhHHHHHHHHHHHHh-cCceEEEeCCCCCH
Q 022946 124 KDAVMQAAQKAKEAGSTRFCMGAA--WR----------------DTIGRKTNFNQILEYVKDIRD-MGMEVCCTLGMLEK 184 (289)
Q Consensus 124 ~eei~~~~~~~~~~g~~~i~i~~~--~~----------------~~~ge~~~~~~l~e~i~~ik~-~~~~i~~~~g~l~~ 184 (289)
.+++.+.++.+.+.|++-+.+... +. ...| +......++.++.+++ .++.+..+.|..+.
T Consensus 165 ~~~~~~~a~~~~~~G~d~i~~~nt~~g~~~~~~~~~~~~~~~~gg~sg-~~~~~~~~~~i~~i~~~~~ipii~~GGI~~~ 243 (296)
T cd04740 165 VTDIVEIARAAEEAGADGLTLINTLKGMAIDIETRKPILGNVTGGLSG-PAIKPIALRMVYQVYKAVEIPIIGVGGIASG 243 (296)
T ss_pred chhHHHHHHHHHHcCCCEEEEECCCcccccccccCceeecCCcceecC-cccchHHHHHHHHHHHhcCCCEEEECCCCCH
Confidence 345667777788889888766310 00 0011 1122345666777763 57888888888888
Q ss_pred HHHHHHHHcCCCeEecCC
Q 022946 185 HQAIELKKAGLTAYNHNL 202 (289)
Q Consensus 185 e~l~~L~~aG~~~v~i~l 202 (289)
+.+.++..+|+|.|.++=
T Consensus 244 ~da~~~l~~GAd~V~igr 261 (296)
T cd04740 244 EDALEFLMAGASAVQVGT 261 (296)
T ss_pred HHHHHHHHcCCCEEEEch
Confidence 888888889999998763
No 385
>cd02911 arch_FMN Archeal FMN-binding domain. This family of archaeal proteins are part of the NAD(P)H-dependent flavin oxidoreductase (oxidored) FMN-binding family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN. The specific function of this group is unknown.
Probab=77.04 E-value=20 Score=30.31 Aligned_cols=78 Identities=15% Similarity=0.088 Sum_probs=50.6
Q ss_pred HHHHHHHHHHHHcCCcEEEEecccCCCCCCchhHHHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHcCCCeEecCCCc
Q 022946 125 DAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMGMEVCCTLGMLEKHQAIELKKAGLTAYNHNLDT 204 (289)
Q Consensus 125 eei~~~~~~~~~~g~~~i~i~~~~~~~~ge~~~~~~l~e~i~~ik~~~~~i~~~~g~l~~e~l~~L~~aG~~~v~i~let 204 (289)
++.++.++.+.+.|++.+++.... + |.+..+ +.++.++ .++.+..+.|..+.+.+.++.+.|+|.|.++=-
T Consensus 152 ~~~~~la~~l~~aG~d~ihv~~~~--~-g~~ad~----~~I~~i~-~~ipVIgnGgI~s~eda~~~l~~GaD~VmiGR~- 222 (233)
T cd02911 152 VDDEELARLIEKAGADIIHVDAMD--P-GNHADL----KKIRDIS-TELFIIGNNSVTTIESAKEMFSYGADMVSVARA- 222 (233)
T ss_pred cCHHHHHHHHHHhCCCEEEECcCC--C-CCCCcH----HHHHHhc-CCCEEEEECCcCCHHHHHHHHHcCCCEEEEcCC-
Confidence 456666677778888877664321 1 111122 3444444 467788888888999998888899999988754
Q ss_pred h-HHHHhc
Q 022946 205 S-REFYSK 211 (289)
Q Consensus 205 ~-~~~~~~ 211 (289)
. |.+++.
T Consensus 223 ~~p~~~~~ 230 (233)
T cd02911 223 SLPENIEW 230 (233)
T ss_pred CCchHHHH
Confidence 3 544443
No 386
>COG3142 CutC Uncharacterized protein involved in copper resistance [Inorganic ion transport and metabolism]
Probab=76.97 E-value=43 Score=28.11 Aligned_cols=118 Identities=12% Similarity=0.148 Sum_probs=70.9
Q ss_pred HHHHHHHHHHHHHcCCcEEEEecccCCCCCCchhHHHHHHHHHHHHhcCceEEEeCC-CC-CHHHHHHHHHcCCCeEecC
Q 022946 124 KDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMGMEVCCTLG-ML-EKHQAIELKKAGLTAYNHN 201 (289)
Q Consensus 124 ~eei~~~~~~~~~~g~~~i~i~~~~~~~~ge~~~~~~l~e~i~~ik~~~~~i~~~~g-~l-~~e~l~~L~~aG~~~v~i~ 201 (289)
.+-+.+.++.+++.|+.-|+++.-. . ......+.+.++++....+++.++.-.. .. ..+.++.|.+.|+.+|.-+
T Consensus 72 ~~iM~~DI~~~~~lG~~GVV~G~lt--~-dg~iD~~~le~Li~aA~gL~vTFHrAFD~~~d~~~ale~li~~Gv~RILTs 148 (241)
T COG3142 72 LEIMLEDIRLARELGVQGVVLGALT--A-DGNIDMPRLEKLIEAAGGLGVTFHRAFDECPDPLEALEQLIELGVERILTS 148 (241)
T ss_pred HHHHHHHHHHHHHcCCCcEEEeeec--C-CCccCHHHHHHHHHHccCCceeeehhhhhcCCHHHHHHHHHHCCCcEEecC
Confidence 3556677778889999999986532 1 2245667777777766555555432211 11 4567899999999999754
Q ss_pred CCchHHHHhccCCCCCHHHHHHHHHHHHHcCCceeecEEeecCCCHHHHHHHHHH
Q 022946 202 LDTSREFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHT 256 (289)
Q Consensus 202 let~~~~~~~i~~~~~~~~~~~~i~~~~~~Gi~v~~~~i~Glget~ed~~~~l~~ 256 (289)
=.... --..++.+.+.|+.++ | ...+|.|-|-+.+.+..+...
T Consensus 149 Gg~~s-------a~eg~~~l~~li~~a~--g---ri~Im~GaGV~~~N~~~l~~~ 191 (241)
T COG3142 149 GGKAS-------ALEGLDLLKRLIEQAK--G---RIIIMAGAGVRAENIAELVLL 191 (241)
T ss_pred CCcCc-------hhhhHHHHHHHHHHhc--C---CEEEEeCCCCCHHHHHHHHHh
Confidence 32210 0012344444444443 2 234588888888877766554
No 387
>PRK06843 inosine 5-monophosphate dehydrogenase; Validated
Probab=76.96 E-value=47 Score=30.56 Aligned_cols=119 Identities=13% Similarity=0.182 Sum_probs=68.2
Q ss_pred HHHHHHHHHHHcCCcEEEEecccCCCCCCchhHHHHHHHHHHHHhc--CceEEEeCCCCCHHHHHHHHHcCCCeEecCCC
Q 022946 126 AVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDM--GMEVCCTLGMLEKHQAIELKKAGLTAYNHNLD 203 (289)
Q Consensus 126 ei~~~~~~~~~~g~~~i~i~~~~~~~~ge~~~~~~l~e~i~~ik~~--~~~i~~~~g~l~~e~l~~L~~aG~~~v~i~le 203 (289)
+-.+.++.+.+.|++-|++-... | +-..+.++++.+|+. +..+.. .+..+.+....+.++|+|.|.+|+.
T Consensus 153 ~~~~~v~~lv~aGvDvI~iD~a~----g---~~~~~~~~v~~ik~~~p~~~vi~-g~V~T~e~a~~l~~aGaD~I~vG~g 224 (404)
T PRK06843 153 DTIERVEELVKAHVDILVIDSAH----G---HSTRIIELVKKIKTKYPNLDLIA-GNIVTKEAALDLISVGADCLKVGIG 224 (404)
T ss_pred HHHHHHHHHHhcCCCEEEEECCC----C---CChhHHHHHHHHHhhCCCCcEEE-EecCCHHHHHHHHHcCCCEEEECCC
Confidence 35677778888999988874421 2 125677888888854 344332 2357899999999999999988764
Q ss_pred ch-HHHHhccCC-C-CCHHHHHHHHHHHHHcCCceeecEEeecCCCHHHHHHHHH
Q 022946 204 TS-REFYSKIIT-T-RSYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLH 255 (289)
Q Consensus 204 t~-~~~~~~i~~-~-~~~~~~~~~i~~~~~~Gi~v~~~~i~Glget~ed~~~~l~ 255 (289)
.. --.-+.+.. + ..+..+.+.-+.+++.++++.+. |=-.+..|+...+.
T Consensus 225 ~Gs~c~tr~~~g~g~p~ltai~~v~~~~~~~~vpVIAd---GGI~~~~Di~KALa 276 (404)
T PRK06843 225 PGSICTTRIVAGVGVPQITAICDVYEVCKNTNICIIAD---GGIRFSGDVVKAIA 276 (404)
T ss_pred CCcCCcceeecCCCCChHHHHHHHHHHHhhcCCeEEEe---CCCCCHHHHHHHHH
Confidence 42 111111111 1 13444444444455556553211 21335666665554
No 388
>PRK13398 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=76.94 E-value=48 Score=28.62 Aligned_cols=107 Identities=14% Similarity=0.198 Sum_probs=69.0
Q ss_pred CHHHHHHHHHHHHHcCCcEEEEecccCCCCCCc----hhHHHHHHHHHHH-HhcCceEEEeCCCCCHHHHHHHHHcCCCe
Q 022946 123 TKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRK----TNFNQILEYVKDI-RDMGMEVCCTLGMLEKHQAIELKKAGLTA 197 (289)
Q Consensus 123 ~~eei~~~~~~~~~~g~~~i~i~~~~~~~~ge~----~~~~~l~e~i~~i-k~~~~~i~~~~g~l~~e~l~~L~~aG~~~ 197 (289)
+.+.+++.++.+++.|+.-+ ..+.+. +--.| ...+.-++.++++ ++.|+.+.++. ++...++.+.+. ++.
T Consensus 39 ~~~~~~~~A~~lk~~g~~~~-r~~~~k-pRTs~~s~~G~g~~gl~~l~~~~~~~Gl~~~te~--~d~~~~~~l~~~-vd~ 113 (266)
T PRK13398 39 SEEQMVKVAEKLKELGVHML-RGGAFK-PRTSPYSFQGLGEEGLKILKEVGDKYNLPVVTEV--MDTRDVEEVADY-ADM 113 (266)
T ss_pred CHHHHHHHHHHHHHcCCCEE-EEeeec-CCCCCCccCCcHHHHHHHHHHHHHHcCCCEEEee--CChhhHHHHHHh-CCE
Confidence 67889999999999998743 333221 11001 1113333334443 47799887654 678888888888 899
Q ss_pred EecCCCch--HHHHhccCC---------C--CCHHHHHHHHHHHHHcCCc
Q 022946 198 YNHNLDTS--REFYSKIIT---------T--RSYDERLETLKHVREAGIN 234 (289)
Q Consensus 198 v~i~let~--~~~~~~i~~---------~--~~~~~~~~~i~~~~~~Gi~ 234 (289)
+.++--.. .++++.+.. + .+.++++.+++.++..|-.
T Consensus 114 ~kIga~~~~n~~LL~~~a~~gkPV~lk~G~~~s~~e~~~A~e~i~~~Gn~ 163 (266)
T PRK13398 114 LQIGSRNMQNFELLKEVGKTKKPILLKRGMSATLEEWLYAAEYIMSEGNE 163 (266)
T ss_pred EEECcccccCHHHHHHHhcCCCcEEEeCCCCCCHHHHHHHHHHHHhcCCC
Confidence 98865443 455555542 1 2689999999999988863
No 389
>cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain. Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present.
Probab=76.92 E-value=18 Score=30.13 Aligned_cols=74 Identities=12% Similarity=0.237 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHcCCcEEEEecccCCC-CCCchhHHHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHc-CCCeEecC
Q 022946 125 DAVMQAAQKAKEAGSTRFCMGAAWRDT-IGRKTNFNQILEYVKDIRDMGMEVCCTLGMLEKHQAIELKKA-GLTAYNHN 201 (289)
Q Consensus 125 eei~~~~~~~~~~g~~~i~i~~~~~~~-~ge~~~~~~l~e~i~~ik~~~~~i~~~~g~l~~e~l~~L~~a-G~~~v~i~ 201 (289)
++..+.++.+.+.|++.+++.+..... ...+..++.+.++.+ ...+.+..+.|..+.+.+.++.+. |+|.|.++
T Consensus 138 ~~~~~~~~~l~~~Gvd~i~v~~~~~~~~~~~~~~~~~~~~i~~---~~~ipvi~~Ggi~~~~d~~~~l~~~gad~V~ig 213 (231)
T cd02801 138 EETLELAKALEDAGASALTVHGRTREQRYSGPADWDYIAEIKE---AVSIPVIANGDIFSLEDALRCLEQTGVDGVMIG 213 (231)
T ss_pred hHHHHHHHHHHHhCCCEEEECCCCHHHcCCCCCCHHHHHHHHh---CCCCeEEEeCCCCCHHHHHHHHHhcCCCEEEEc
No 390
>PLN02746 hydroxymethylglutaryl-CoA lyase
Probab=76.91 E-value=34 Score=30.80 Aligned_cols=39 Identities=18% Similarity=0.214 Sum_probs=23.2
Q ss_pred chhHHHHHHHHHHHHhcCce---EEEeCCCCCHHHHHHHHHc
Q 022946 155 KTNFNQILEYVKDIRDMGME---VCCTLGMLEKHQAIELKKA 193 (289)
Q Consensus 155 ~~~~~~l~e~i~~ik~~~~~---i~~~~g~l~~e~l~~L~~a 193 (289)
+...++++++++.+.+.|.. +.-+.|..++..+.++.++
T Consensus 193 r~~~~~l~~~~~~~~~~Gad~I~l~DT~G~a~P~~v~~lv~~ 234 (347)
T PLN02746 193 PVPPSKVAYVAKELYDMGCYEISLGDTIGVGTPGTVVPMLEA 234 (347)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEecCCcCCcCHHHHHHHHHH
Confidence 34567777777777666544 3345677666665544443
No 391
>PF00977 His_biosynth: Histidine biosynthesis protein; InterPro: IPR006062 Histidine is formed by several complex and distinct biochemical reactions catalysed by eight enzymes. Proteins involved in steps 4 and 6 of the histidine biosynthesis pathway are contained in one family. These enzymes are called His6 and His7 in eukaryotes and HisA and HisF in prokaryotes. HisA is a phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (5.3.1.16 from EC), involved in the fourth step of histidine biosynthesis. The bacterial HisF protein is a cyclase which catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate during the sixth step of histidine biosynthesis. The yeast His7 protein is a bifunctional protein which catalyzes an amido-transferase reaction that generates imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide. The latter is the ribonucleotide used for purine biosynthesis. The enzyme also catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate, and is involved in the fifth and sixth steps in histidine biosynthesis.; GO: 0000105 histidine biosynthetic process; PDB: 2VEP_A 2X30_A 1VZW_A 2WJZ_A 2LLE_A 2A0N_A 1THF_D 1GPW_E 1VH7_A 1KA9_F ....
Probab=76.71 E-value=32 Score=28.87 Aligned_cols=72 Identities=21% Similarity=0.304 Sum_probs=45.8
Q ss_pred CCHHHHHHHHHHHHHcCCcEEEEecccCC-CCCCchhHHHHHHHHHHHH-hcCceEEEeCCCCCHHHHHHHHHcCCCeEe
Q 022946 122 MTKDAVMQAAQKAKEAGSTRFCMGAAWRD-TIGRKTNFNQILEYVKDIR-DMGMEVCCTLGMLEKHQAIELKKAGLTAYN 199 (289)
Q Consensus 122 ~~~eei~~~~~~~~~~g~~~i~i~~~~~~-~~ge~~~~~~l~e~i~~ik-~~~~~i~~~~g~l~~e~l~~L~~aG~~~v~ 199 (289)
+++.++++ ++.+.|+.++.++.-+.+ +...+ .+ ++++.+. ..++++....|.-+.+.+.+|++.|++.+.
T Consensus 147 ~~~~~~~~---~~~~~g~~~ii~tdi~~dGt~~G~-d~----~~~~~l~~~~~~~viasGGv~~~~Dl~~l~~~G~~gvi 218 (229)
T PF00977_consen 147 IDLEEFAK---RLEELGAGEIILTDIDRDGTMQGP-DL----ELLKQLAEAVNIPVIASGGVRSLEDLRELKKAGIDGVI 218 (229)
T ss_dssp EEHHHHHH---HHHHTT-SEEEEEETTTTTTSSS---H----HHHHHHHHHHSSEEEEESS--SHHHHHHHHHTTECEEE
T ss_pred cCHHHHHH---HHHhcCCcEEEEeeccccCCcCCC-CH----HHHHHHHHHcCCCEEEecCCCCHHHHHHHHHCCCcEEE
Confidence 45555554 555889999988654322 11111 22 4455554 448888889999899999999999998887
Q ss_pred cC
Q 022946 200 HN 201 (289)
Q Consensus 200 i~ 201 (289)
++
T Consensus 219 vg 220 (229)
T PF00977_consen 219 VG 220 (229)
T ss_dssp ES
T ss_pred Ee
Confidence 65
No 392
>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed
Probab=76.59 E-value=52 Score=28.78 Aligned_cols=78 Identities=18% Similarity=0.186 Sum_probs=47.9
Q ss_pred CHHHHHHHHHHHHHcC-CcEEEEecccCCC-C-CCc--hhHHHHHHHHHHHHhc-CceEEEeCCC-C--CHHHHHHHHHc
Q 022946 123 TKDAVMQAAQKAKEAG-STRFCMGAAWRDT-I-GRK--TNFNQILEYVKDIRDM-GMEVCCTLGM-L--EKHQAIELKKA 193 (289)
Q Consensus 123 ~~eei~~~~~~~~~~g-~~~i~i~~~~~~~-~-ge~--~~~~~l~e~i~~ik~~-~~~i~~~~g~-l--~~e~l~~L~~a 193 (289)
+++++.+.++.+.+.| ++-|.+..+-.+. . |.. ...+.+.++++.+++. .+.+.+.... . ..+.++.+.++
T Consensus 102 ~~~~~~~~a~~~~~aG~~D~iElN~~cP~~~~gg~~~~~~~~~~~eiv~~vr~~~~~pv~vKl~~~~~~~~~~a~~l~~~ 181 (301)
T PRK07259 102 TEEEYAEVAEKLSKAPNVDAIELNISCPNVKHGGMAFGTDPELAYEVVKAVKEVVKVPVIVKLTPNVTDIVEIAKAAEEA 181 (301)
T ss_pred CHHHHHHHHHHHhccCCcCEEEEECCCCCCCCCccccccCHHHHHHHHHHHHHhcCCCEEEEcCCCchhHHHHHHHHHHc
Confidence 4688888888888888 8888773211110 0 111 1236677777777743 5555443321 1 23457888999
Q ss_pred CCCeEec
Q 022946 194 GLTAYNH 200 (289)
Q Consensus 194 G~~~v~i 200 (289)
|+|.+.+
T Consensus 182 G~d~i~~ 188 (301)
T PRK07259 182 GADGLSL 188 (301)
T ss_pred CCCEEEE
Confidence 9998754
No 393
>cd07941 DRE_TIM_LeuA3 Desulfobacterium autotrophicum LeuA3 and related proteins, N-terminal catalytic TIM barrel domain. Desulfobacterium autotrophicum LeuA3 is sequence-similar to alpha-isopropylmalate synthase (LeuA) but its exact function is unknown. Members of this family have an N-terminal TIM barrel domain that belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of in
Probab=76.50 E-value=13 Score=32.18 Aligned_cols=31 Identities=23% Similarity=0.267 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHhcCce---EEEeCCCCCHHHHH
Q 022946 158 FNQILEYVKDIRDMGME---VCCTLGMLEKHQAI 188 (289)
Q Consensus 158 ~~~l~e~i~~ik~~~~~---i~~~~g~l~~e~l~ 188 (289)
.+.+.++++.+.+.|.. +.-|.|..+++.+.
T Consensus 150 ~~~~~~~~~~~~~~g~~~i~l~DT~G~~~P~~v~ 183 (273)
T cd07941 150 PEYALATLKAAAEAGADWLVLCDTNGGTLPHEIA 183 (273)
T ss_pred HHHHHHHHHHHHhCCCCEEEEecCCCCCCHHHHH
Confidence 34455555544443332 23345555544443
No 394
>PRK14040 oxaloacetate decarboxylase; Provisional
Probab=76.37 E-value=72 Score=31.05 Aligned_cols=98 Identities=14% Similarity=0.259 Sum_probs=58.7
Q ss_pred CHHHHHHHHHHHHHcCCcEEEEecccCCCCCCchhHHHHHHHHHHHH-hcC--ceEEEe--CCCCCHHHHHHHHHcCCCe
Q 022946 123 TKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIR-DMG--MEVCCT--LGMLEKHQAIELKKAGLTA 197 (289)
Q Consensus 123 ~~eei~~~~~~~~~~g~~~i~i~~~~~~~~ge~~~~~~l~e~i~~ik-~~~--~~i~~~--~g~l~~e~l~~L~~aG~~~ 197 (289)
+.+.+.+.++.+.+.|++.|+|.. +.|- ..-..+.++++.++ ..+ +.++++ .|.-....+ .-.++|++.
T Consensus 153 ~~~~~~~~a~~l~~~Gad~i~i~D----t~G~-l~P~~~~~lv~~lk~~~~~pi~~H~Hnt~GlA~An~l-aAieAGa~~ 226 (593)
T PRK14040 153 TLQTWVDLAKQLEDMGVDSLCIKD----MAGL-LKPYAAYELVSRIKKRVDVPLHLHCHATTGLSTATLL-KAIEAGIDG 226 (593)
T ss_pred CHHHHHHHHHHHHHcCCCEEEECC----CCCC-cCHHHHHHHHHHHHHhcCCeEEEEECCCCchHHHHHH-HHHHcCCCE
Confidence 678888888889899999999854 1221 12245666666666 223 334444 454333333 345789999
Q ss_pred EecCCCch-HHHHhccCCCCCHHHHHHHHHHHHHcCCc
Q 022946 198 YNHNLDTS-REFYSKIITTRSYDERLETLKHVREAGIN 234 (289)
Q Consensus 198 v~i~let~-~~~~~~i~~~~~~~~~~~~i~~~~~~Gi~ 234 (289)
|..++.+. .. ...-+.+.++.+++ ..|+.
T Consensus 227 vD~ai~glG~~-----~Gn~~le~vv~~L~---~~~~~ 256 (593)
T PRK14040 227 VDTAISSMSMT-----YGHSATETLVATLE---GTERD 256 (593)
T ss_pred EEecccccccc-----ccchhHHHHHHHHH---hcCCC
Confidence 99988776 42 12234555555553 34554
No 395
>TIGR00126 deoC deoxyribose-phosphate aldolase. Deoxyribose-phosphate aldolase is involved in the catabolism of nucleotides and deoxyriibonucleotides. The catalytic process is as follows: 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde. It is found in both gram-postive and gram-negative bacteria.
Probab=76.01 E-value=15 Score=30.51 Aligned_cols=75 Identities=16% Similarity=0.244 Sum_probs=40.7
Q ss_pred CCHHHHHHHHHHHHHcCCcEEEEecccCCCCCCchhHHHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHcCCCeEec
Q 022946 122 MTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMGMEVCCTLGMLEKHQAIELKKAGLTAYNH 200 (289)
Q Consensus 122 ~~~eei~~~~~~~~~~g~~~i~i~~~~~~~~ge~~~~~~l~e~i~~ik~~~~~i~~~~g~l~~e~l~~L~~aG~~~v~i 200 (289)
++.+++....+.+.+.|.+.|-...|. .+.| ...+.+..+.+.++. .+.+-.+.|.-+.+.+..|.++|.+++..
T Consensus 129 L~~~ei~~a~~ia~eaGADfvKTsTGf-~~~g--at~~dv~~m~~~v~~-~v~IKaaGGirt~~~a~~~i~aGa~riGt 203 (211)
T TIGR00126 129 LTDEEIRKACEICIDAGADFVKTSTGF-GAGG--ATVEDVRLMRNTVGD-TIGVKASGGVRTAEDAIAMIEAGASRIGA 203 (211)
T ss_pred CCHHHHHHHHHHHHHhCCCEEEeCCCC-CCCC--CCHHHHHHHHHHhcc-CCeEEEeCCCCCHHHHHHHHHHhhHHhCc
Confidence 455677766677777777766443322 1112 222333323222322 44555566666777777777777776654
No 396
>cd04733 OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 2. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=75.85 E-value=30 Score=30.95 Aligned_cols=79 Identities=15% Similarity=0.180 Sum_probs=36.3
Q ss_pred CHHHHHHHHHHHHHcCCcEEEEecccCCCCCC------ch--hHHHHHHHHHHHH-hcCceEEEeCCCCCHHHHHHHHHc
Q 022946 123 TKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGR------KT--NFNQILEYVKDIR-DMGMEVCCTLGMLEKHQAIELKKA 193 (289)
Q Consensus 123 ~~eei~~~~~~~~~~g~~~i~i~~~~~~~~ge------~~--~~~~l~e~i~~ik-~~~~~i~~~~g~l~~e~l~~L~~a 193 (289)
+.++.++.++.+.+.|++-+.+.++....... +. .-....+..+.+| ..++.+....+..+.+.++++.+.
T Consensus 234 ~~eea~~ia~~Le~~Gvd~iev~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~v~iPVi~~G~i~t~~~a~~~l~~ 313 (338)
T cd04733 234 TEEDALEVVEALEEAGVDLVELSGGTYESPAMAGAKKESTIAREAYFLEFAEKIRKVTKTPLMVTGGFRTRAAMEQALAS 313 (338)
T ss_pred CHHHHHHHHHHHHHcCCCEEEecCCCCCCccccccccCCccccchhhHHHHHHHHHHcCCCEEEeCCCCCHHHHHHHHHc
Confidence 45555566666666666555554332110000 00 0011234444444 235555555454556655555554
Q ss_pred C-CCeEecC
Q 022946 194 G-LTAYNHN 201 (289)
Q Consensus 194 G-~~~v~i~ 201 (289)
| +|.|.++
T Consensus 314 g~aD~V~lg 322 (338)
T cd04733 314 GAVDGIGLA 322 (338)
T ss_pred CCCCeeeeC
Confidence 3 5666554
No 397
>cd04732 HisA HisA. Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene.
Probab=75.83 E-value=25 Score=29.34 Aligned_cols=70 Identities=20% Similarity=0.219 Sum_probs=45.9
Q ss_pred HHHHHHHHHcCCcEEEEecccCCCCCCchhHHHHHHHHHHHH-hcCceEEEeCCCCCHHHHHHHHHcCCCeEecC
Q 022946 128 MQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIR-DMGMEVCCTLGMLEKHQAIELKKAGLTAYNHN 201 (289)
Q Consensus 128 ~~~~~~~~~~g~~~i~i~~~~~~~~ge~~~~~~l~e~i~~ik-~~~~~i~~~~g~l~~e~l~~L~~aG~~~v~i~ 201 (289)
.+.++.+.+.|++.+.+.+-...-...... .++++.++ ...+++....|..+.+.+.++.+.|++.+.++
T Consensus 149 ~~~~~~~~~~ga~~iii~~~~~~g~~~g~~----~~~i~~i~~~~~ipvi~~GGi~~~~di~~~~~~Ga~gv~vg 219 (234)
T cd04732 149 EELAKRFEELGVKAIIYTDISRDGTLSGPN----FELYKELAAATGIPVIASGGVSSLDDIKALKELGVAGVIVG 219 (234)
T ss_pred HHHHHHHHHcCCCEEEEEeecCCCccCCCC----HHHHHHHHHhcCCCEEEecCCCCHHHHHHHHHCCCCEEEEe
Confidence 344555668899998876532110111112 34555555 34778888888888998989989999998875
No 398
>PF03786 UxuA: D-mannonate dehydratase (UxuA); InterPro: IPR004628 This Fe2+-requiring enzyme plays a role in D-glucuronate catabolism in Escherichia coli. Mannonate dehydratase converts D-mannonate to 2-dehydro-3-deoxy-D-gluconate. An apparent equivalog is found in a glucuronate utilization operon in Bacillus stearothermophilus T-6.; GO: 0008927 mannonate dehydratase activity, 0006064 glucuronate catabolic process; PDB: 1TZ9_A 3FVM_A 3BDK_B 3BAN_B 3DBN_B.
Probab=75.83 E-value=10 Score=34.08 Aligned_cols=85 Identities=15% Similarity=0.235 Sum_probs=41.4
Q ss_pred CCcEEEEecccCCCCCCchhHHHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHcCCCeEecCCCchHHHHhccCCCCC
Q 022946 138 GSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMGMEVCCTLGMLEKHQAIELKKAGLTAYNHNLDTSREFYSKIITTRS 217 (289)
Q Consensus 138 g~~~i~i~~~~~~~~ge~~~~~~l~e~i~~ik~~~~~i~~~~g~l~~e~l~~L~~aG~~~v~i~let~~~~~~~i~~~~~ 217 (289)
|++.|+..-. ..+.|++..++.+.+..+.+.+.|+.+.+--.. + ..+.. -.+.+.- ...
T Consensus 25 Gv~giV~al~-~~p~g~~W~~e~i~~~k~~ie~~GL~~~vIEsv-p--v~e~I--------klG~~~R---------D~~ 83 (351)
T PF03786_consen 25 GVTGIVTALH-DIPNGEVWDYEEIRALKERIEAAGLTLSVIESV-P--VHEDI--------KLGLPGR---------DEE 83 (351)
T ss_dssp TEEEEEE--S-SS-TTS---HHHHHHHHHHHHCTT-EEEEEES-------HHH--------HCT-TTH---------HHH
T ss_pred CCCCeeeCCC-CCCCCCCCCHHHHHHHHHHHHHcCCeEEEEecC-C--hHHHH--------hcCCCcH---------HHH
Confidence 7777755332 234577777788877777777777665331110 0 00110 1111111 113
Q ss_pred HHHHHHHHHHHHHcCCc-eeecEEeec
Q 022946 218 YDERLETLKHVREAGIN-VCSGGIIGL 243 (289)
Q Consensus 218 ~~~~~~~i~~~~~~Gi~-v~~~~i~Gl 243 (289)
.+.+++.|+++.++||+ ++.+||..+
T Consensus 84 Ieny~~~Irnlg~~GI~vvcYNFMPv~ 110 (351)
T PF03786_consen 84 IENYKQTIRNLGKAGIKVVCYNFMPVF 110 (351)
T ss_dssp HHHHHHHHHHHHHTT--EEEEE--SS-
T ss_pred HHHHHHHHHHHHhcCCCEEEEEeeeee
Confidence 57889999999999998 677888765
No 399
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=75.73 E-value=51 Score=28.26 Aligned_cols=44 Identities=18% Similarity=0.190 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHhc-CceEEEeCCCCCHHHHHHHHHcCCCeEecC
Q 022946 158 FNQILEYVKDIRDM-GMEVCCTLGMLEKHQAIELKKAGLTAYNHN 201 (289)
Q Consensus 158 ~~~l~e~i~~ik~~-~~~i~~~~g~l~~e~l~~L~~aG~~~v~i~ 201 (289)
...+.+.++.+++. +..+.+-.|.-+.+.++.+.++|.|.+-+|
T Consensus 183 ~~~~~~~i~~lr~~~~~pi~vgfGI~~~e~~~~~~~~GADgvVvG 227 (256)
T TIGR00262 183 ASALNELVKRLKAYSAKPVLVGFGISKPEQVKQAIDAGADGVIVG 227 (256)
T ss_pred ChhHHHHHHHHHhhcCCCEEEeCCCCCHHHHHHHHHcCCCEEEEC
Confidence 35577777777743 556666667667888888888888887776
No 400
>cd02072 Glm_B12_BD B12 binding domain of glutamate mutase (Glm). Glutamate mutase catalysis the conversion of (S)-glutamate with (2S,3S)-3-methylaspartate. The rearrangement reaction is initiated by the extraction of a hydrogen from the protein-bound substrate by a 5'-desoxyadenosyl radical, which is generated by the homolytic cleavage of the organometallic bond of the cofactor B12. Glm is a heterotetrameric molecule consisting of two alpha and two epsilon polypeptide chains.
Probab=75.20 E-value=32 Score=26.10 Aligned_cols=82 Identities=12% Similarity=0.023 Sum_probs=53.7
Q ss_pred HHhcCceEEEeCCC--CCHHHHHHHHHcCCCeEecCCCchHHHHhccCCCCCHHHHHHHHHHHHHcCCceeecEEeec--
Q 022946 168 IRDMGMEVCCTLGM--LEKHQAIELKKAGLTAYNHNLDTSREFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGL-- 243 (289)
Q Consensus 168 ik~~~~~i~~~~g~--l~~e~l~~L~~aG~~~v~i~let~~~~~~~i~~~~~~~~~~~~i~~~~~~Gi~v~~~~i~Gl-- 243 (289)
++..|+++. +.|. ..++.++..++.+.+.|.+|.= -+.+.+...+.++.+++.|+.- .-+++|=
T Consensus 23 L~~~GfeVi-dLG~~v~~e~~v~aa~~~~adiVglS~L----------~t~~~~~~~~~~~~l~~~gl~~-v~vivGG~~ 90 (128)
T cd02072 23 FTEAGFNVV-NLGVLSPQEEFIDAAIETDADAILVSSL----------YGHGEIDCKGLREKCDEAGLKD-ILLYVGGNL 90 (128)
T ss_pred HHHCCCEEE-ECCCCCCHHHHHHHHHHcCCCEEEEecc----------ccCCHHHHHHHHHHHHHCCCCC-CeEEEECCC
Confidence 346677763 3343 3456678888888888877541 1246677788889999999842 4455553
Q ss_pred CCCHHHHHHHHHHHhcCC
Q 022946 244 GEAEEDRVGLLHTLATLP 261 (289)
Q Consensus 244 get~ed~~~~l~~l~~l~ 261 (289)
.-..++..+....|++++
T Consensus 91 ~i~~~d~~~~~~~L~~~G 108 (128)
T cd02072 91 VVGKQDFEDVEKRFKEMG 108 (128)
T ss_pred CCChhhhHHHHHHHHHcC
Confidence 235567777778888883
No 401
>PF00218 IGPS: Indole-3-glycerol phosphate synthase; InterPro: IPR013798 Indole-3-glycerol phosphate synthase (4.1.1.48 from EC) (IGPS) catalyses the fourth step in the biosynthesis of tryptophan, the ring closure of 1-(2-carboxy-phenylamino)-1-deoxyribulose into indol-3-glycerol-phosphate. In some bacteria, IGPS is a single chain enzyme. In others, such as Escherichia coli, it is the N-terminal domain of a bifunctional enzyme that also catalyses N-(5'-phosphoribosyl)anthranilate isomerase (5.3.1.24 from EC) (PRAI) activity (see IPR001240 from INTERPRO), the third step of tryptophan biosynthesis. In fungi, IGPS is the central domain of a trifunctional enzyme that contains a PRAI C-terminal domain and a glutamine amidotransferase (2.4.2 from EC) (GATase) N-terminal domain (see IPR000991 from INTERPRO). A structure of the IGPS domain of the bifunctional enzyme from the mesophilic bacterium E. coli (eIGPS) has been compared with the monomeric indole-3-glycerol phosphate synthase from the hyperthermophilic archaeon Sulfolobus solfataricus (sIGPS). Both are single-domain (beta/alpha)8 barrel proteins, with one (eIGPS) or two (sIGPS) additional helices inserted before the first beta strand []. ; GO: 0004425 indole-3-glycerol-phosphate synthase activity; PDB: 1VC4_A 1PII_A 1JCM_P 1I4N_B 1J5T_A 3TSM_B 4FB7_A 3QJA_A 1JUL_A 2C3Z_A ....
Probab=75.20 E-value=48 Score=28.45 Aligned_cols=115 Identities=21% Similarity=0.190 Sum_probs=66.8
Q ss_pred HHHHHHHHHcCCcEEEEecccCCCCCCchhHHHHHHHHHHHH-hcCceEEEeCCCCCHHHHHHHHHcCCCeEecCCCchH
Q 022946 128 MQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIR-DMGMEVCCTLGMLEKHQAIELKKAGLTAYNHNLDTSR 206 (289)
Q Consensus 128 ~~~~~~~~~~g~~~i~i~~~~~~~~ge~~~~~~l~e~i~~ik-~~~~~i~~~~g~l~~e~l~~L~~aG~~~v~i~let~~ 206 (289)
.+.++.....|+.-+.+.... .+|..=.+.+..++ ...+.+....-.+++.++.+-+.+|.|.|.+-....
T Consensus 71 ~~~a~~y~~~GA~aiSVlTe~-------~~F~Gs~~dL~~v~~~~~~PvL~KDFIid~~QI~eA~~~GADaVLLI~~~L- 142 (254)
T PF00218_consen 71 AEIAKAYEEAGAAAISVLTEP-------KFFGGSLEDLRAVRKAVDLPVLRKDFIIDPYQIYEARAAGADAVLLIAAIL- 142 (254)
T ss_dssp HHHHHHHHHTT-SEEEEE--S-------CCCHHHHHHHHHHHHHSSS-EEEES---SHHHHHHHHHTT-SEEEEEGGGS-
T ss_pred HHHHHHHHhcCCCEEEEECCC-------CCCCCCHHHHHHHHHHhCCCcccccCCCCHHHHHHHHHcCCCEeehhHHhC-
Confidence 334445667899988776532 23333344445555 457888888888999999999999999998766443
Q ss_pred HHHhccCCCCCHHHHHHHHHHHHHcCCceeecEEeecCCCHHHHHHHHHHHhcCCCCCCeeeecc
Q 022946 207 EFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINA 271 (289)
Q Consensus 207 ~~~~~i~~~~~~~~~~~~i~~~~~~Gi~v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~i~~ 271 (289)
+.+...+.++.+++.|+.+ ++= -++.+|+...+ +. +...++++.
T Consensus 143 ----------~~~~l~~l~~~a~~lGle~----lVE-Vh~~~El~~al----~~--~a~iiGINn 186 (254)
T PF00218_consen 143 ----------SDDQLEELLELAHSLGLEA----LVE-VHNEEELERAL----EA--GADIIGINN 186 (254)
T ss_dssp ----------GHHHHHHHHHHHHHTT-EE----EEE-ESSHHHHHHHH----HT--T-SEEEEES
T ss_pred ----------CHHHHHHHHHHHHHcCCCe----EEE-ECCHHHHHHHH----Hc--CCCEEEEeC
Confidence 2344567778888888875 322 24556655544 33 345566654
No 402
>PRK10415 tRNA-dihydrouridine synthase B; Provisional
Probab=75.19 E-value=21 Score=31.70 Aligned_cols=76 Identities=12% Similarity=0.191 Sum_probs=51.1
Q ss_pred HHHHHHHHHHHHcCCcEEEEecccCCC-CCCchhHHHHHHHHHHHH-hcCceEEEeCCCCCHHHHHHHHH-cCCCeEecC
Q 022946 125 DAVMQAAQKAKEAGSTRFCMGAAWRDT-IGRKTNFNQILEYVKDIR-DMGMEVCCTLGMLEKHQAIELKK-AGLTAYNHN 201 (289)
Q Consensus 125 eei~~~~~~~~~~g~~~i~i~~~~~~~-~ge~~~~~~l~e~i~~ik-~~~~~i~~~~g~l~~e~l~~L~~-aG~~~v~i~ 201 (289)
++..+.++.+.+.|++.+++.+..... +..+.. .+.+++++ ..++.+..+.|..+.+.++++.+ .|+|.|.+|
T Consensus 149 ~~~~~~a~~le~~G~d~i~vh~rt~~~~~~G~a~----~~~i~~ik~~~~iPVI~nGgI~s~~da~~~l~~~gadgVmiG 224 (321)
T PRK10415 149 RNCVEIAQLAEDCGIQALTIHGRTRACLFNGEAE----YDSIRAVKQKVSIPVIANGDITDPLKARAVLDYTGADALMIG 224 (321)
T ss_pred chHHHHHHHHHHhCCCEEEEecCccccccCCCcC----hHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHhccCCCEEEEC
Confidence 356677777778899999886532111 111122 35666666 35788888888889988877776 699999987
Q ss_pred CCc
Q 022946 202 LDT 204 (289)
Q Consensus 202 let 204 (289)
=-.
T Consensus 225 R~~ 227 (321)
T PRK10415 225 RAA 227 (321)
T ss_pred hHh
Confidence 433
No 403
>TIGR00695 uxuA mannonate dehydratase. This Fe2+-requiring enzyme plays a role in D-glucuronate catabolism in Escherichia coli. Mannonate dehydratase converts D-mannonate to 2-dehydro-3-deoxy-D-gluconate. An apparent equivalog is found in a glucuronate utilization operon in Bacillus stearothermophilus T-6.
Probab=75.14 E-value=21 Score=32.69 Aligned_cols=87 Identities=18% Similarity=0.247 Sum_probs=0.0
Q ss_pred HHHHHHcCCcEEEEecccCCCCCCchhHHHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHcCCCeEecCCCchHHHHh
Q 022946 131 AQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMGMEVCCTLGMLEKHQAIELKKAGLTAYNHNLDTSREFYS 210 (289)
Q Consensus 131 ~~~~~~~g~~~i~i~~~~~~~~ge~~~~~~l~e~i~~ik~~~~~i~~~~g~l~~e~l~~L~~aG~~~v~i~let~~~~~~ 210 (289)
++.++..|++.|+..-..... |+....+.+.+.-+.+...|+++.+ +|+.+ +++
T Consensus 16 l~~irQ~G~~giV~al~~~p~-gevW~~~~i~~~k~~ie~~GL~~~v------------------------vEs~p-v~e 69 (394)
T TIGR00695 16 LEDVRQAGATGIVTALHHIPN-GEVWEKEEIRKRKEYIESAGLHWSV------------------------VESVP-VHE 69 (394)
T ss_pred HHHHhhcCCcceeecCCCCCC-CCCCCHHHHHHHHHHHHHcCCeEEE------------------------EeCCC-ccH
Q ss_pred ccCCCCC-----HHHHHHHHHHHHHcCCc-eeecEEeec
Q 022946 211 KIITTRS-----YDERLETLKHVREAGIN-VCSGGIIGL 243 (289)
Q Consensus 211 ~i~~~~~-----~~~~~~~i~~~~~~Gi~-v~~~~i~Gl 243 (289)
.|..+.. .+.+.++|+++-++||+ ++.+||..+
T Consensus 70 ~Ik~g~~~rd~~Ienyk~~irNla~~GI~vicYNFMPv~ 108 (394)
T TIGR00695 70 AIKTGTGNYGRWIENYKQTLRNLAQCGIKTVCYNFMPVL 108 (394)
T ss_pred HHHcCCCcHHHHHHHHHHHHHHHHHcCCCEEEEEecccc
No 404
>PRK01033 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=75.13 E-value=30 Score=29.60 Aligned_cols=69 Identities=16% Similarity=0.216 Sum_probs=44.5
Q ss_pred HHHHHHHHHcCCcEEEEecccCC-CCCCchhHHHHHHHHHHHH-hcCceEEEeCCCCCHHHHHHHH-HcCCCeEecC
Q 022946 128 MQAAQKAKEAGSTRFCMGAAWRD-TIGRKTNFNQILEYVKDIR-DMGMEVCCTLGMLEKHQAIELK-KAGLTAYNHN 201 (289)
Q Consensus 128 ~~~~~~~~~~g~~~i~i~~~~~~-~~ge~~~~~~l~e~i~~ik-~~~~~i~~~~g~l~~e~l~~L~-~aG~~~v~i~ 201 (289)
.+.++.+.+.|+..+.+.+-+.. +...+ .++ +++.++ ...+++..+.|..+.+.+.++. +.|++.+.++
T Consensus 155 ~e~~~~~~~~g~~~ii~~~i~~~G~~~G~-d~~----~i~~~~~~~~ipvIasGGv~s~eD~~~l~~~~GvdgVivg 226 (258)
T PRK01033 155 LELAKEYEALGAGEILLNSIDRDGTMKGY-DLE----LLKSFRNALKIPLIALGGAGSLDDIVEAILNLGADAAAAG 226 (258)
T ss_pred HHHHHHHHHcCCCEEEEEccCCCCCcCCC-CHH----HHHHHHhhCCCCEEEeCCCCCHHHHHHHHHHCCCCEEEEc
Confidence 33444556889999988643221 11112 333 333334 3478888889999988888876 7999988765
No 405
>TIGR00973 leuA_bact 2-isopropylmalate synthase, bacterial type. A larger family of homologous proteins includes homocitrate synthase, distinct lineages of 2-isopropylmalate synthase, several distinct, uncharacterized, orthologous sets in the Archaea, and other related enzymes. This model describes a family of 2-isopropylmalate synthases found primarily in Bacteria. The homologous families in the Archaea may represent isozymes and/or related enzymes.
Probab=75.11 E-value=37 Score=32.23 Aligned_cols=23 Identities=17% Similarity=0.172 Sum_probs=15.0
Q ss_pred CHHHHHHHHHHHHHcCCcEEEEe
Q 022946 123 TKDAVMQAAQKAKEAGSTRFCMG 145 (289)
Q Consensus 123 ~~eei~~~~~~~~~~g~~~i~i~ 145 (289)
+++.+.+.++.+.+.|++.|.+.
T Consensus 144 d~~~l~~~~~~~~~~Ga~~i~l~ 166 (494)
T TIGR00973 144 EIPFLARIVEAAINAGATTINIP 166 (494)
T ss_pred CHHHHHHHHHHHHHcCCCEEEeC
Confidence 55666666666666677666663
No 406
>TIGR02660 nifV_homocitr homocitrate synthase NifV. This family consists of the NifV clade of homocitrate synthases, most of which are found in operons for nitrogen fixation. Members are closely homologous to enzymes that include 2-isopropylmalate synthase, (R)-citramalate synthase, and homocitrate synthases associated with other processes. The homocitrate made by this enzyme becomes a part of the iron-molybdenum cofactor of nitrogenase.
Probab=75.09 E-value=59 Score=29.43 Aligned_cols=78 Identities=27% Similarity=0.404 Sum_probs=48.6
Q ss_pred CCHHHHHHHHHHHHHcCCcEEEEecccCCCCCCchhHHHHHHHHHHHHh-cC--ceEEEe--CCCCCHHHHHHHHHcCCC
Q 022946 122 MTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRD-MG--MEVCCT--LGMLEKHQAIELKKAGLT 196 (289)
Q Consensus 122 ~~~eei~~~~~~~~~~g~~~i~i~~~~~~~~ge~~~~~~l~e~i~~ik~-~~--~~i~~~--~g~l~~e~l~~L~~aG~~ 196 (289)
.+++.+.+.++.+.+.|++.|.+.. +.|- ..-..+.++++.+++ .+ +.++++ .|.-....+..+ ++|++
T Consensus 139 ~~~~~l~~~~~~~~~~Ga~~i~l~D----T~G~-~~P~~v~~lv~~l~~~~~v~l~~H~HNd~GlA~ANalaA~-~aGa~ 212 (365)
T TIGR02660 139 ADPDFLVELAEVAAEAGADRFRFAD----TVGI-LDPFSTYELVRALRQAVDLPLEMHAHNDLGMATANTLAAV-RAGAT 212 (365)
T ss_pred CCHHHHHHHHHHHHHcCcCEEEEcc----cCCC-CCHHHHHHHHHHHHHhcCCeEEEEecCCCChHHHHHHHHH-HhCCC
Confidence 4778899999988899999998854 2221 122455555555552 23 334444 454444445554 77999
Q ss_pred eEecCCCch
Q 022946 197 AYNHNLDTS 205 (289)
Q Consensus 197 ~v~i~let~ 205 (289)
.|..++.+.
T Consensus 213 ~vd~tl~Gi 221 (365)
T TIGR02660 213 HVNTTVNGL 221 (365)
T ss_pred EEEEEeecc
Confidence 998777654
No 407
>cd04723 HisA_HisF Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase (HisA) and the cyclase subunit of imidazoleglycerol phosphate synthase (HisF). The ProFAR isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene. The Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and pl
Probab=74.63 E-value=31 Score=29.06 Aligned_cols=74 Identities=11% Similarity=0.062 Sum_probs=45.8
Q ss_pred CCHHHHHHHHHHHHHcCCcEEEEecccCCCCCCchhHHHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHcCCCeEecC
Q 022946 122 MTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMGMEVCCTLGMLEKHQAIELKKAGLTAYNHN 201 (289)
Q Consensus 122 ~~~eei~~~~~~~~~~g~~~i~i~~~~~~~~ge~~~~~~l~e~i~~ik~~~~~i~~~~g~l~~e~l~~L~~aG~~~v~i~ 201 (289)
.++.++++.+ .+. +.++.+..-+..-.+....++.+.++.+ ...+++....|.-+.+.++.+.++|++.+.+|
T Consensus 146 ~~~~~~~~~~---~~~-~~~li~~di~~~G~~~g~~~~~~~~i~~---~~~ipvi~~GGi~s~edi~~l~~~G~~~vivG 218 (233)
T cd04723 146 IGPEELLRRL---AKW-PEELIVLDIDRVGSGQGPDLELLERLAA---RADIPVIAAGGVRSVEDLELLKKLGASGALVA 218 (233)
T ss_pred CCHHHHHHHH---HHh-CCeEEEEEcCccccCCCcCHHHHHHHHH---hcCCCEEEeCCCCCHHHHHHHHHcCCCEEEEe
Confidence 4566655544 455 6777765422211111123333333332 34778888899999999999999999998876
Q ss_pred C
Q 022946 202 L 202 (289)
Q Consensus 202 l 202 (289)
-
T Consensus 219 s 219 (233)
T cd04723 219 S 219 (233)
T ss_pred h
Confidence 3
No 408
>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed
Probab=74.58 E-value=22 Score=31.18 Aligned_cols=79 Identities=20% Similarity=0.212 Sum_probs=51.8
Q ss_pred CHHHHHHHHHHHHHcCCcEEEEecc--cC--C--------------CCCCchhHHHHHHHHHHHHh-cCceEEEeCCCCC
Q 022946 123 TKDAVMQAAQKAKEAGSTRFCMGAA--WR--D--------------TIGRKTNFNQILEYVKDIRD-MGMEVCCTLGMLE 183 (289)
Q Consensus 123 ~~eei~~~~~~~~~~g~~~i~i~~~--~~--~--------------~~ge~~~~~~l~e~i~~ik~-~~~~i~~~~g~l~ 183 (289)
+.+++.+.++.+.+.|++-+++... +. + ..| +......++.++.+++ .++.+..+.|..+
T Consensus 167 ~~~~~~~~a~~l~~~G~d~i~~~nt~~g~~~~~~~~~~~~~~~~gg~sg-~~~~p~~l~~v~~i~~~~~ipvi~~GGI~~ 245 (301)
T PRK07259 167 NVTDIVEIAKAAEEAGADGLSLINTLKGMAIDIKTRKPILANVTGGLSG-PAIKPIALRMVYQVYQAVDIPIIGMGGISS 245 (301)
T ss_pred CchhHHHHHHHHHHcCCCEEEEEccccccccccccCceeecCCcCccCC-cCcccccHHHHHHHHHhCCCCEEEECCCCC
Confidence 3567777778888889887765321 00 0 001 1112234566666663 4788888888889
Q ss_pred HHHHHHHHHcCCCeEecCC
Q 022946 184 KHQAIELKKAGLTAYNHNL 202 (289)
Q Consensus 184 ~e~l~~L~~aG~~~v~i~l 202 (289)
.+.+.++..+|+|.|.++=
T Consensus 246 ~~da~~~l~aGAd~V~igr 264 (301)
T PRK07259 246 AEDAIEFIMAGASAVQVGT 264 (301)
T ss_pred HHHHHHHHHcCCCceeEcH
Confidence 9999888889999888753
No 409
>PRK00115 hemE uroporphyrinogen decarboxylase; Validated
Probab=74.52 E-value=64 Score=28.87 Aligned_cols=70 Identities=10% Similarity=0.141 Sum_probs=38.7
Q ss_pred HHHHHHcCCcEEEEecccCCCCCCchhH-----HHHHHHHHHHHhc--CceEEEeCCCCCHHHHHHHHHcCCCeEecCC
Q 022946 131 AQKAKEAGSTRFCMGAAWRDTIGRKTNF-----NQILEYVKDIRDM--GMEVCCTLGMLEKHQAIELKKAGLTAYNHNL 202 (289)
Q Consensus 131 ~~~~~~~g~~~i~i~~~~~~~~ge~~~~-----~~l~e~i~~ik~~--~~~i~~~~g~l~~e~l~~L~~aG~~~v~i~l 202 (289)
++...+.|++-+.+...+..... |..+ +.+.++++.+++. +..+.-..| -....++.|++.|++.++++-
T Consensus 192 ~~~~~eaGad~i~i~d~~~~~ls-p~~f~ef~~P~~k~i~~~i~~~~~~~~ilh~cg-~~~~~~~~~~~~~~~~is~d~ 268 (346)
T PRK00115 192 LNAQIEAGAQAVQIFDSWAGALS-PADYREFVLPYMKRIVAELKREHPDVPVILFGK-GAGELLEAMAETGADVVGLDW 268 (346)
T ss_pred HHHHHHcCCCEEEEecCccccCC-HHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEcC-CcHHHHHHHHhcCCCEEeeCC
Confidence 33344578887765432212222 3333 4445666666654 344432333 224568889999999887654
No 410
>cd03465 URO-D_like The URO-D _like protein superfamily includes bacterial and eukaryotic uroporphyrinogen decarboxylases (URO-D), coenzyme M methyltransferases and other putative bacterial methyltransferases. Uroporphyrinogen decarboxylase (URO-D) decarboxylates the four acetate side chains of uroporphyrinogen III (uro-III) to create coproporphyrinogen III, an important branching point of the tetrapyrrole biosynthetic pathway. The methyltransferases represented here are important for ability of methanogenic organisms to use other compounds than carbon dioxide for reduction to methane.
Probab=74.42 E-value=61 Score=28.56 Aligned_cols=74 Identities=14% Similarity=0.195 Sum_probs=41.1
Q ss_pred HHHHHHHHHcCCcEEEEecccCCCC-CCch-h----HHHHHHHHHHHHhcCceEEEe-CCCCCHHHHHHHHHcCCCeEec
Q 022946 128 MQAAQKAKEAGSTRFCMGAAWRDTI-GRKT-N----FNQILEYVKDIRDMGMEVCCT-LGMLEKHQAIELKKAGLTAYNH 200 (289)
Q Consensus 128 ~~~~~~~~~~g~~~i~i~~~~~~~~-ge~~-~----~~~l~e~i~~ik~~~~~i~~~-~g~l~~e~l~~L~~aG~~~v~i 200 (289)
++.++.+.+.|++-+.+...+.... -.|. + .+.+.++++.+++.+..+..+ .|. ....++.|.+.|++.+++
T Consensus 171 ~~~~~~~~~~G~d~i~i~d~~~~~~~isp~~f~e~~~p~~k~i~~~i~~~g~~~~lH~cG~-~~~~~~~l~~~~~d~~~~ 249 (330)
T cd03465 171 IRYADALIEAGADGIYISDPWASSSILSPEDFKEFSLPYLKKVFDAIKALGGPVIHHNCGD-TAPILELMADLGADVFSI 249 (330)
T ss_pred HHHHHHHHHhCCCEEEEeCCccccCCCCHHHHHHHhhHHHHHHHHHHHHcCCceEEEECCC-chhHHHHHHHhCCCeEee
Confidence 3344445566887776654221111 0122 2 244455566666555554333 343 347799999999998876
Q ss_pred CC
Q 022946 201 NL 202 (289)
Q Consensus 201 ~l 202 (289)
..
T Consensus 250 d~ 251 (330)
T cd03465 250 DV 251 (330)
T ss_pred cc
Confidence 54
No 411
>TIGR01768 GGGP-family geranylgeranylglyceryl phosphate synthase family protein. This model represents a family of sequences including geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The clade of bacterial sequences may have the same function or a closely related function. This model supercedes TIGR00265, which has been retired.
Probab=74.38 E-value=44 Score=28.05 Aligned_cols=77 Identities=18% Similarity=0.166 Sum_probs=50.8
Q ss_pred CCHHHHHHHHHHHHH-cCCcEEEEecccCCCCCCchhHHHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHcCCCeEec
Q 022946 122 MTKDAVMQAAQKAKE-AGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMGMEVCCTLGMLEKHQAIELKKAGLTAYNH 200 (289)
Q Consensus 122 ~~~eei~~~~~~~~~-~g~~~i~i~~~~~~~~ge~~~~~~l~e~i~~ik~~~~~i~~~~g~l~~e~l~~L~~aG~~~v~i 200 (289)
.+.+++.....-+.+ .|.+-|.+-.++. .|.+.. .++++.+++.-. ++.+..-.|.-+.+.++.+.++|+|.|.+
T Consensus 132 ~~~~~~aa~~~lA~~~~g~~~vYlE~gs~--~g~~v~-~e~i~~v~~~~~-~~pl~vGGGIrs~e~a~~l~~aGAD~VVV 207 (223)
T TIGR01768 132 YDKEDLAAYAAMAEEMLGMPIIYLEAGSG--APEPVP-PELVAEVKKVLD-KARLFVGGGIRSVEKAREMAEAGADTIVT 207 (223)
T ss_pred CCcHHHHHHHHHHHHHcCCcEEEEEecCC--CCCCcC-HHHHHHHHHHcC-CCCEEEecCCCCHHHHHHHHHcCCCEEEE
Confidence 466777776666655 6888888853221 233323 333444433211 56777778899999999999999999987
Q ss_pred CC
Q 022946 201 NL 202 (289)
Q Consensus 201 ~l 202 (289)
|=
T Consensus 208 Gs 209 (223)
T TIGR01768 208 GN 209 (223)
T ss_pred Cc
Confidence 63
No 412
>PF03932 CutC: CutC family; InterPro: IPR005627 Copper transport in Escherichia coli is mediated by the products of at least six genes, cutA, cutB, cutC, cutD, cutE, and cutF. A mutation in one or more of these genes results in an increased copper sensitivity. Members of this family are between 200 and 300 amino acids in length and are found in both eukaryotes and bacteria.; GO: 0005507 copper ion binding, 0055070 copper ion homeostasis; PDB: 2BDQ_A 3IWP_I 1X8C_B 1X7I_A 1TWD_B.
Probab=74.31 E-value=31 Score=28.42 Aligned_cols=115 Identities=17% Similarity=0.196 Sum_probs=61.0
Q ss_pred CHHHHHHHHHHHHHcCCcEEEEecccCCCCCCchhHHHHHHHHHHHHhcCceEEEeC---CCC-CHHHHHHHHHcCCCeE
Q 022946 123 TKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMGMEVCCTL---GML-EKHQAIELKKAGLTAY 198 (289)
Q Consensus 123 ~~eei~~~~~~~~~~g~~~i~i~~~~~~~~ge~~~~~~l~e~i~~ik~~~~~i~~~~---g~l-~~e~l~~L~~aG~~~v 198 (289)
..+.+.+.++.+++.|++.|+|+.-.. .| ....+.+.++++..+ ++++..+- ... ..+.++.|.+.|+++|
T Consensus 70 E~~~M~~dI~~~~~~GadG~VfG~L~~--dg-~iD~~~~~~Li~~a~--~~~~tFHRAfD~~~d~~~al~~L~~lG~~rV 144 (201)
T PF03932_consen 70 EIEIMKEDIRMLRELGADGFVFGALTE--DG-EIDEEALEELIEAAG--GMPVTFHRAFDEVPDPEEALEQLIELGFDRV 144 (201)
T ss_dssp HHHHHHHHHHHHHHTT-SEEEE--BET--TS-SB-HHHHHHHHHHHT--TSEEEE-GGGGGSSTHHHHHHHHHHHT-SEE
T ss_pred HHHHHHHHHHHHHHcCCCeeEEEeECC--CC-CcCHHHHHHHHHhcC--CCeEEEeCcHHHhCCHHHHHHHHHhcCCCEE
Confidence 446677788888899999998865221 12 345666777776665 44543331 112 3456899999999999
Q ss_pred ecC--CCchHHHHhccCCCCCHHHHHHHHHHHHHcCCceeecEEeecCCCHHHHHHHHHH
Q 022946 199 NHN--LDTSREFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHT 256 (289)
Q Consensus 199 ~i~--let~~~~~~~i~~~~~~~~~~~~i~~~~~~Gi~v~~~~i~Glget~ed~~~~l~~ 256 (289)
.-+ -.+. ....+...+.++.++ ..+ .+|.|=|-+.+.+...++.
T Consensus 145 LTSGg~~~a---------~~g~~~L~~lv~~a~-~~i----~Im~GgGv~~~nv~~l~~~ 190 (201)
T PF03932_consen 145 LTSGGAPTA---------LEGIENLKELVEQAK-GRI----EIMPGGGVRAENVPELVEE 190 (201)
T ss_dssp EESTTSSST---------TTCHHHHHHHHHHHT-TSS----EEEEESS--TTTHHHHHHH
T ss_pred ECCCCCCCH---------HHHHHHHHHHHHHcC-CCc----EEEecCCCCHHHHHHHHHh
Confidence 643 2111 123333333333322 123 4677766555555555553
No 413
>cd02812 PcrB_like PcrB_like proteins. One member of this family, a protein from Archaeoglobus fulgidus, has been characterized as a (S)-3-O-geranylgeranylglyceryl phosphate synthase (AfGGGPS). AfGGGPS catalyzes the formation of an ether linkage between sn-glycerol-1-phosphate (G1P) and geranylgeranyl diphosphate (GGPP), the committed step in archaeal lipid biosynthesis. Therefore, it has been proposed that PcrB-like proteins are either prenyltransferases or are involved in lipoteichoic acid biosynthesis although the exact function is still unknown.
Probab=74.17 E-value=40 Score=28.21 Aligned_cols=73 Identities=16% Similarity=0.123 Sum_probs=52.1
Q ss_pred CCCHHHHHHHHHHHHHcCCcEEEEecccCCCCCCchhHHHHHHHHHHHH-hc-CceEEEeCCCCCHHHHHHHHHcCCCeE
Q 022946 121 LMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIR-DM-GMEVCCTLGMLEKHQAIELKKAGLTAY 198 (289)
Q Consensus 121 ~~~~eei~~~~~~~~~~g~~~i~i~~~~~~~~ge~~~~~~l~e~i~~ik-~~-~~~i~~~~g~l~~e~l~~L~~aG~~~v 198 (289)
..++|++...+..+...|.+-|.+-+. |.+.. .++++.++ .. ++.+..-.|.-+.+.++++.++|.|.|
T Consensus 131 ~~~~e~~~ayA~aae~~g~~ivyLe~S-----G~~~~----~e~I~~v~~~~~~~pl~vGGGIrs~e~a~~l~~aGAD~V 201 (219)
T cd02812 131 DLKPEDAAAYALAAEYLGMPIVYLEYS-----GAYGP----PEVVRAVKKVLGDTPLIVGGGIRSGEQAKEMAEAGADTI 201 (219)
T ss_pred CCCHHHHHHHHHHHHHcCCeEEEeCCC-----CCcCC----HHHHHHHHHhcCCCCEEEeCCCCCHHHHHHHHHcCCCEE
Confidence 368899999988888889655555421 22212 23444444 23 677777888999999999999999999
Q ss_pred ecCC
Q 022946 199 NHNL 202 (289)
Q Consensus 199 ~i~l 202 (289)
.+|=
T Consensus 202 VVGs 205 (219)
T cd02812 202 VVGN 205 (219)
T ss_pred EECc
Confidence 8763
No 414
>cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain. Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th
Probab=73.85 E-value=27 Score=30.09 Aligned_cols=35 Identities=20% Similarity=0.444 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHhcCce---EEEeCCCCCHHHHHHHHH
Q 022946 158 FNQILEYVKDIRDMGME---VCCTLGMLEKHQAIELKK 192 (289)
Q Consensus 158 ~~~l~e~i~~ik~~~~~---i~~~~g~l~~e~l~~L~~ 192 (289)
.+.+.++++.+.+.+.. +.-+.|.++++.+..+.+
T Consensus 140 ~~~l~~~~~~~~~~g~~~i~l~Dt~G~~~P~~v~~~~~ 177 (262)
T cd07948 140 LVDLLRVYRAVDKLGVNRVGIADTVGIATPRQVYELVR 177 (262)
T ss_pred HHHHHHHHHHHHHcCCCEEEECCcCCCCCHHHHHHHHH
Confidence 45566666666655443 334567666666544433
No 415
>PRK14024 phosphoribosyl isomerase A; Provisional
Probab=73.81 E-value=29 Score=29.34 Aligned_cols=72 Identities=15% Similarity=0.246 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHcCCcEEEEecccCCC-CCCchhHHHHHHHHHHHH-hcCceEEEeCCCCCHHHHHHHHH---cCCCeEec
Q 022946 126 AVMQAAQKAKEAGSTRFCMGAAWRDT-IGRKTNFNQILEYVKDIR-DMGMEVCCTLGMLEKHQAIELKK---AGLTAYNH 200 (289)
Q Consensus 126 ei~~~~~~~~~~g~~~i~i~~~~~~~-~ge~~~~~~l~e~i~~ik-~~~~~i~~~~g~l~~e~l~~L~~---aG~~~v~i 200 (289)
...+.++.+.+.|+..+.+.+-...- +..+ . .++++.++ ...+++..+.|..+.+.+.++.+ .|++.+-+
T Consensus 147 ~~~~~~~~l~~~G~~~iiv~~~~~~g~~~G~-d----~~~i~~i~~~~~ipviasGGi~s~~D~~~l~~~~~~GvdgV~i 221 (241)
T PRK14024 147 DLWEVLERLDSAGCSRYVVTDVTKDGTLTGP-N----LELLREVCARTDAPVVASGGVSSLDDLRALAELVPLGVEGAIV 221 (241)
T ss_pred cHHHHHHHHHhcCCCEEEEEeecCCCCccCC-C----HHHHHHHHhhCCCCEEEeCCCCCHHHHHHHhhhccCCccEEEE
Confidence 44555566678999999886533221 1112 3 33444444 34788888889999998888764 49998877
Q ss_pred CC
Q 022946 201 NL 202 (289)
Q Consensus 201 ~l 202 (289)
+=
T Consensus 222 gr 223 (241)
T PRK14024 222 GK 223 (241)
T ss_pred eH
Confidence 53
No 416
>PF01207 Dus: Dihydrouridine synthase (Dus); InterPro: IPR001269 Members of this family catalyse the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archae. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. Dus 1 (P53759 from SWISSPROT) from Saccharomyces cerevisiae (Baker's yeast) acts on pre-tRNA-Phe, while Dus 2 (P53720 from SWISSPROT) acts on pre-tRNA-Tyr and pre-tRNA-Leu. Dus 1 is active as a single subunit, requiring NADPH or NADH, and is stimulated by the presence of FAD []. Some family members may be targeted to the mitochondria and even have a role in mitochondria []. ; GO: 0017150 tRNA dihydrouridine synthase activity, 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing, 0055114 oxidation-reduction process; PDB: 1VHN_A 3B0P_A 3B0V_D 3B0U_Y.
Probab=73.77 E-value=11 Score=33.20 Aligned_cols=84 Identities=11% Similarity=0.184 Sum_probs=46.9
Q ss_pred CHHHHHHHHHHHHHcCCcEEEEecccCCC-CCCchhHHHHHHHHHHHH-hcCceEEEeCCCCCHHHHHHHHHc-CCCeEe
Q 022946 123 TKDAVMQAAQKAKEAGSTRFCMGAAWRDT-IGRKTNFNQILEYVKDIR-DMGMEVCCTLGMLEKHQAIELKKA-GLTAYN 199 (289)
Q Consensus 123 ~~eei~~~~~~~~~~g~~~i~i~~~~~~~-~ge~~~~~~l~e~i~~ik-~~~~~i~~~~g~l~~e~l~~L~~a-G~~~v~ 199 (289)
+.++.++.++.+.+.|++.+++-+=.... +..+..++.+ +.++ ...+.+..|.+..+.+.+.++.+. |++.|-
T Consensus 136 ~~~~~~~~~~~l~~~G~~~i~vH~Rt~~q~~~~~a~w~~i----~~i~~~~~ipvi~NGdI~s~~d~~~~~~~tg~dgvM 211 (309)
T PF01207_consen 136 SPEETIEFARILEDAGVSAITVHGRTRKQRYKGPADWEAI----AEIKEALPIPVIANGDIFSPEDAERMLEQTGADGVM 211 (309)
T ss_dssp -CHHHHHHHHHHHHTT--EEEEECS-TTCCCTS---HHHH----HHCHHC-TSEEEEESS--SHHHHHHHCCCH-SSEEE
T ss_pred chhHHHHHHHHhhhcccceEEEecCchhhcCCcccchHHH----HHHhhcccceeEEcCccCCHHHHHHHHHhcCCcEEE
Confidence 45778888888888898888886521100 1113344433 4444 335888888888888888776665 999998
Q ss_pred cCCCch--HHHHh
Q 022946 200 HNLDTS--REFYS 210 (289)
Q Consensus 200 i~let~--~~~~~ 210 (289)
++=-.. |.++.
T Consensus 212 igRgal~nP~lf~ 224 (309)
T PF01207_consen 212 IGRGALGNPWLFR 224 (309)
T ss_dssp ESHHHCC-CCHHC
T ss_pred EchhhhhcCHHhh
Confidence 864332 44444
No 417
>cd03308 CmuA_CmuC_like CmuA_CmuC_like: uncharacterized protein family similar to uroporphyrinogen decarboxylase (URO-D) and the methyltransferases CmuA and CmuC.
Probab=73.72 E-value=71 Score=29.05 Aligned_cols=98 Identities=11% Similarity=0.075 Sum_probs=49.3
Q ss_pred HHHHHHHHHHHhcCceEEEe-CCCCCHHHHHHHHHcCCCeEecCCCch--HHHHhccCC--------------CCCHHHH
Q 022946 159 NQILEYVKDIRDMGMEVCCT-LGMLEKHQAIELKKAGLTAYNHNLDTS--REFYSKIIT--------------TRSYDER 221 (289)
Q Consensus 159 ~~l~e~i~~ik~~~~~i~~~-~g~l~~e~l~~L~~aG~~~v~i~let~--~~~~~~i~~--------------~~~~~~~ 221 (289)
+++.++++.+++.+..+... .| -....++.|++.|.+.+....+.. .+..+.+.. ..+.+++
T Consensus 255 P~~k~i~~~i~~~g~~~ilh~cG-~~~~~l~~l~~~g~~~v~~~~~~~dl~~ak~~~g~~~~i~GNl~p~~L~~Gt~e~i 333 (378)
T cd03308 255 PSFKKVVEGLAARGQRIFLFFEG-DWERYLEYLQELPKGKTVGLFEYGDPKKVKEKLGDKKCIAGGFPTTLLKYGTPEEC 333 (378)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCC-CcHHHHHHHHhcCCCcEEEcCCCCCHHHHHHHhCCCEEEEcCCCCHHHhcCCHHHH
Confidence 44556666676555543333 34 345578999999987333223222 333222221 1245666
Q ss_pred HHHHHHHHHcCCceeecEEeecC-----CC---HHHHHHHHHHHh
Q 022946 222 LETLKHVREAGINVCSGGIIGLG-----EA---EEDRVGLLHTLA 258 (289)
Q Consensus 222 ~~~i~~~~~~Gi~v~~~~i~Glg-----et---~ed~~~~l~~l~ 258 (289)
.+.++.+-+.+.. ..++|++.| +| .|.+..+++.++
T Consensus 334 ~~~v~~~l~~~~~-~~gfIl~~gcgi~p~tp~~~eNi~a~v~av~ 377 (378)
T cd03308 334 IDYVKELLDTLAP-GGGFIFGTDKPIISADDAKPENLIAVIEFVR 377 (378)
T ss_pred HHHHHHHHHHhCC-CCCEEEeCCCcCCCCCCCChHHHHHHHHHHh
Confidence 6666665554331 123555332 33 355655555443
No 418
>PRK07428 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=73.55 E-value=29 Score=30.40 Aligned_cols=59 Identities=12% Similarity=0.145 Sum_probs=38.4
Q ss_pred HHHcCCcEEEEecccCCCCCCchhHHHHHHHHHHHHh--cCceEEEeCCCCCHHHHHHHHHcCCCeEecCC
Q 022946 134 AKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRD--MGMEVCCTLGMLEKHQAIELKKAGLTAYNHNL 202 (289)
Q Consensus 134 ~~~~g~~~i~i~~~~~~~~ge~~~~~~l~e~i~~ik~--~~~~i~~~~g~l~~e~l~~L~~aG~~~v~i~l 202 (289)
+.+.|++.|-+. +...+.+.++++.++. ..+.+..+.| ++.+.+.++.+.|+|.|.++-
T Consensus 212 A~~~GaD~I~LD---------n~~~e~l~~av~~~~~~~~~i~leAsGG-It~~ni~~ya~tGvD~Isvgs 272 (288)
T PRK07428 212 ALEYGADIIMLD---------NMPVDLMQQAVQLIRQQNPRVKIEASGN-ITLETIRAVAETGVDYISSSA 272 (288)
T ss_pred HHHcCCCEEEEC---------CCCHHHHHHHHHHHHhcCCCeEEEEECC-CCHHHHHHHHHcCCCEEEEch
Confidence 345677655442 1233556666665553 2445555555 789999999999999999875
No 419
>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3.1.21.2 from EC). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae []. ; PDB: 3KWS_B 3DX5_A 3CQH_B 3CQI_A 3CQK_A 3CQJ_B 2G0W_B 1DXI_A 2ZDS_D 3TVA_B ....
Probab=73.18 E-value=14 Score=29.72 Aligned_cols=76 Identities=13% Similarity=-0.001 Sum_probs=0.0
Q ss_pred HHHHHHcCCCeEecCCCch-HHHHhccCCCCCHHHHHHHHHHHHHcCCceeecEEeecCCC---------------HHHH
Q 022946 187 AIELKKAGLTAYNHNLDTS-REFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGLGEA---------------EEDR 250 (289)
Q Consensus 187 l~~L~~aG~~~v~i~let~-~~~~~~i~~~~~~~~~~~~i~~~~~~Gi~v~~~~i~Glget---------------~ed~ 250 (289)
++.++++|++.|.+..... +.... .+...+..+.+++.|+.+.+......... .+.+
T Consensus 1 l~~~~~~G~~~vE~~~~~~~~~~~~-------~~~~~~~~~~~~~~gl~i~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 73 (213)
T PF01261_consen 1 LEAAAEAGFDGVELRFDDGQPWDEK-------DDEAEELRRLLEDYGLKIASLHPPTNFWSPDEENGSANDEREEALEYL 73 (213)
T ss_dssp HHHHHHTTHSEEEEEHHHHSHHTHH-------HHHHHHHHHHHHHTTCEEEEEEEEESSSCTGTTSTTSSSHHHHHHHHH
T ss_pred ChHHHHcCCCEEEEecCCCcccccc-------hHHHHHHHHHHHHcCCeEEEEecccccccccccccCcchhhHHHHHHH
Q ss_pred HHHHHHHhcCCCCCCeeeecc
Q 022946 251 VGLLHTLATLPTHPESVPINA 271 (289)
Q Consensus 251 ~~~l~~l~~l~~~~~~v~i~~ 271 (289)
.+.++.++.+ +...+.+..
T Consensus 74 ~~~i~~a~~l--g~~~i~~~~ 92 (213)
T PF01261_consen 74 KKAIDLAKRL--GAKYIVVHS 92 (213)
T ss_dssp HHHHHHHHHH--TBSEEEEEC
T ss_pred HHHHHHHHHh--CCCceeecC
No 420
>cd07945 DRE_TIM_CMS Leptospira interrogans citramalate synthase (CMS) and related proteins, N-terminal catalytic TIM barrel domain. Citramalate synthase (CMS) catalyzes the conversion of pyruvate and acetyl-CoA to (R)-citramalate in the first dedicated step of the citramalate pathway. Citramalate is only found in Leptospira interrogans and a few other microorganisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center con
Probab=73.15 E-value=30 Score=30.10 Aligned_cols=77 Identities=13% Similarity=0.163 Sum_probs=38.6
Q ss_pred CHHHHHHHHHHHHHcCCcEEEEecccCCCCCCchhHHHHHHHHHHHHh----cCceEEEeC--CCCCHHHHHHHHHcCCC
Q 022946 123 TKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRD----MGMEVCCTL--GMLEKHQAIELKKAGLT 196 (289)
Q Consensus 123 ~~eei~~~~~~~~~~g~~~i~i~~~~~~~~ge~~~~~~l~e~i~~ik~----~~~~i~~~~--g~l~~e~l~~L~~aG~~ 196 (289)
+++.+.+.++.+.+.|++.|.+..... ...| ..+.++++.+++ ..+.++.+| |.-....+ .-.++|++
T Consensus 145 ~~~~~~~~~~~~~~~G~~~i~l~DT~G--~~~P---~~v~~l~~~l~~~~~~~~i~~H~Hnd~Gla~AN~l-aA~~aGa~ 218 (280)
T cd07945 145 SPDYVFQLVDFLSDLPIKRIMLPDTLG--ILSP---FETYTYISDMVKRYPNLHFDFHAHNDYDLAVANVL-AAVKAGIK 218 (280)
T ss_pred CHHHHHHHHHHHHHcCCCEEEecCCCC--CCCH---HHHHHHHHHHHhhCCCCeEEEEeCCCCCHHHHHHH-HHHHhCCC
Confidence 557777777777777777777743110 1223 234444444442 122333333 32222222 33445777
Q ss_pred eEecCCCch
Q 022946 197 AYNHNLDTS 205 (289)
Q Consensus 197 ~v~i~let~ 205 (289)
.+..++.+.
T Consensus 219 ~vd~s~~Gl 227 (280)
T cd07945 219 GLHTTVNGL 227 (280)
T ss_pred EEEEecccc
Confidence 777666554
No 421
>TIGR00737 nifR3_yhdG putative TIM-barrel protein, nifR3 family. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=73.14 E-value=30 Score=30.59 Aligned_cols=76 Identities=13% Similarity=0.187 Sum_probs=50.0
Q ss_pred HHHHHHHHHHHcCCcEEEEecccCCCCCCchhHHHHHHHHHHHHh-cCceEEEeCCCCCHHHHHHHH-HcCCCeEecCCC
Q 022946 126 AVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRD-MGMEVCCTLGMLEKHQAIELK-KAGLTAYNHNLD 203 (289)
Q Consensus 126 ei~~~~~~~~~~g~~~i~i~~~~~~~~ge~~~~~~l~e~i~~ik~-~~~~i~~~~g~l~~e~l~~L~-~aG~~~v~i~le 203 (289)
+..+.++.+.+.|++.+++.+..... +-+. ...++.++.+++ .++.+..+.|..+.+.+.++. ..|+|.|.++=.
T Consensus 148 ~~~~~a~~l~~~G~d~i~vh~r~~~~-~~~~--~~~~~~i~~i~~~~~ipvi~nGgI~~~~da~~~l~~~gad~VmigR~ 224 (319)
T TIGR00737 148 NAVEAARIAEDAGAQAVTLHGRTRAQ-GYSG--EANWDIIARVKQAVRIPVIGNGDIFSPEDAKAMLETTGCDGVMIGRG 224 (319)
T ss_pred hHHHHHHHHHHhCCCEEEEEcccccc-cCCC--chhHHHHHHHHHcCCCcEEEeCCCCCHHHHHHHHHhhCCCEEEEChh
Confidence 45566677778899988886522111 1000 123566666663 578888888888888887776 679999998743
Q ss_pred c
Q 022946 204 T 204 (289)
Q Consensus 204 t 204 (289)
.
T Consensus 225 ~ 225 (319)
T TIGR00737 225 A 225 (319)
T ss_pred h
Confidence 3
No 422
>cd04734 OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 3. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. One member of this subgroup, the Sinorhizobium meliloti stachydrine utilization protein stcD, has been idenified as a putative N-methylproline demethylase.
Probab=73.02 E-value=33 Score=30.76 Aligned_cols=81 Identities=14% Similarity=0.098 Sum_probs=42.3
Q ss_pred CHHHHHHHHHHHHHcC-CcEEEEecccCCCC------CCchh--HHHHHHHHHHHH-hcCceEEEeCCCCCHHHHHHHHH
Q 022946 123 TKDAVMQAAQKAKEAG-STRFCMGAAWRDTI------GRKTN--FNQILEYVKDIR-DMGMEVCCTLGMLEKHQAIELKK 192 (289)
Q Consensus 123 ~~eei~~~~~~~~~~g-~~~i~i~~~~~~~~------ge~~~--~~~l~e~i~~ik-~~~~~i~~~~g~l~~e~l~~L~~ 192 (289)
+.++.++.++.+.+.| ++-+.+.++..... -.+.. .....+.++.+| ..++.+..+.+..+.+.++++.+
T Consensus 226 ~~~e~~~~~~~l~~~G~vd~i~vs~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~ipvi~~G~i~~~~~~~~~l~ 305 (343)
T cd04734 226 SPDEALEIAARLAAEGLIDYVNVSAGSYYTLLGLAHVVPSMGMPPGPFLPLAARIKQAVDLPVFHAGRIRDPAEAEQALA 305 (343)
T ss_pred CHHHHHHHHHHHHhcCCCCEEEeCCCCCCcccccccccCCCCCCcchhHHHHHHHHHHcCCCEEeeCCCCCHHHHHHHHH
Confidence 4566666677777776 67776644321100 00000 012244555555 23566666655666676666665
Q ss_pred cC-CCeEecCCC
Q 022946 193 AG-LTAYNHNLD 203 (289)
Q Consensus 193 aG-~~~v~i~le 203 (289)
.| +|.|.++=-
T Consensus 306 ~~~~D~V~~gR~ 317 (343)
T cd04734 306 AGHADMVGMTRA 317 (343)
T ss_pred cCCCCeeeecHH
Confidence 43 777776543
No 423
>PRK08005 epimerase; Validated
Probab=72.94 E-value=37 Score=28.16 Aligned_cols=72 Identities=17% Similarity=0.047 Sum_probs=46.1
Q ss_pred CHHHHHHHHHHHHHcCCcEEEEecccCCCCCCchhHHHHHHHHHHHHhc--CceEEEeCCCCCHHHHHHHHHcCCCeEec
Q 022946 123 TKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDM--GMEVCCTLGMLEKHQAIELKKAGLTAYNH 200 (289)
Q Consensus 123 ~~eei~~~~~~~~~~g~~~i~i~~~~~~~~ge~~~~~~l~e~i~~ik~~--~~~i~~~~g~l~~e~l~~L~~aG~~~v~i 200 (289)
+.+.+...+. -++.|.+.+....+.| ..+.+..++-++.+++. ...+.+..| ++.+.+..++++|+|.+-.
T Consensus 118 p~~~i~~~l~-----~vD~VlvMsV~PGf~G-Q~f~~~~~~KI~~l~~~~~~~~I~VDGG-I~~~~i~~l~~aGad~~V~ 190 (210)
T PRK08005 118 PLLPYRYLAL-----QLDALMIMTSEPDGRG-QQFIAAMCEKVSQSREHFPAAECWADGG-ITLRAARLLAAAGAQHLVI 190 (210)
T ss_pred CHHHHHHHHH-----hcCEEEEEEecCCCcc-ceecHHHHHHHHHHHHhcccCCEEEECC-CCHHHHHHHHHCCCCEEEE
Confidence 4555544333 2456666554433434 45667777777777743 224555544 7899999999999998887
Q ss_pred C
Q 022946 201 N 201 (289)
Q Consensus 201 ~ 201 (289)
|
T Consensus 191 G 191 (210)
T PRK08005 191 G 191 (210)
T ss_pred C
Confidence 6
No 424
>TIGR02668 moaA_archaeal probable molybdenum cofactor biosynthesis protein A, archaeal. This model describes an archaeal family related, and predicted to be functionally equivalent, to molybdenum cofactor biosynthesis protein A (MoaA) of bacteria (see TIGR02666).
Probab=72.91 E-value=64 Score=28.13 Aligned_cols=44 Identities=18% Similarity=0.172 Sum_probs=28.2
Q ss_pred HHHHHHHcCCCeEecCCCchHHHHhccCCCCCHHHHHHHHHHHHHcCCceee
Q 022946 186 QAIELKKAGLTAYNHNLDTSREFYSKIITTRSYDERLETLKHVREAGINVCS 237 (289)
Q Consensus 186 ~l~~L~~aG~~~v~i~let~~~~~~~i~~~~~~~~~~~~i~~~~~~Gi~v~~ 237 (289)
.++.++++|+..+.++. -+.++.+.+++.+.++.+++.|+.+..
T Consensus 139 ~i~~~~~~G~~~v~i~~--------v~~~g~n~~ei~~~~~~~~~~g~~~~~ 182 (302)
T TIGR02668 139 GIESAVDAGLTPVKLNM--------VVLKGINDNEIPDMVEFAAEGGAILQL 182 (302)
T ss_pred HHHHHHHcCCCcEEEEE--------EEeCCCCHHHHHHHHHHHHhcCCEEEE
Confidence 34555556654333322 123456788899999999999987654
No 425
>PRK08385 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=72.91 E-value=28 Score=30.31 Aligned_cols=43 Identities=12% Similarity=0.189 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHhc----CceEEEeCCCCCHHHHHHHHHcCCCeEecCC
Q 022946 159 NQILEYVKDIRDM----GMEVCCTLGMLEKHQAIELKKAGLTAYNHNL 202 (289)
Q Consensus 159 ~~l~e~i~~ik~~----~~~i~~~~g~l~~e~l~~L~~aG~~~v~i~l 202 (289)
+.+.++++.++.. .+.+..+.| ++.+.+.++.+.|+|.+++|-
T Consensus 214 e~l~~~v~~l~~~~~~~~~~leaSGG-I~~~ni~~yA~tGvD~Is~ga 260 (278)
T PRK08385 214 EEIREVIEALKREGLRERVKIEVSGG-ITPENIEEYAKLDVDVISLGA 260 (278)
T ss_pred HHHHHHHHHHHhcCcCCCEEEEEECC-CCHHHHHHHHHcCCCEEEeCh
Confidence 5566666655543 344555555 799999999999999999875
No 426
>PRK10415 tRNA-dihydrouridine synthase B; Provisional
Probab=72.77 E-value=32 Score=30.56 Aligned_cols=83 Identities=13% Similarity=0.095 Sum_probs=50.9
Q ss_pred HHHHHHcCCCeEecCCCch-HHHHhccCCC---CCHHHHHHHHHHHHH-cCCceeecEEeecCCCHHHHHHHHHHHhcCC
Q 022946 187 AIELKKAGLTAYNHNLDTS-REFYSKIITT---RSYDERLETLKHVRE-AGINVCSGGIIGLGEAEEDRVGLLHTLATLP 261 (289)
Q Consensus 187 l~~L~~aG~~~v~i~let~-~~~~~~i~~~---~~~~~~~~~i~~~~~-~Gi~v~~~~i~Glget~ed~~~~l~~l~~l~ 261 (289)
++.+.+.|++.|.+++-.. +.+.+.-.+. .+++...+.++.+++ .++++..-+-.|..++.++..+.++.+.+.
T Consensus 83 a~~~~~~g~d~IdlN~gCP~~~v~~~g~Gs~ll~~p~~~~eiv~av~~a~d~pv~vKiR~G~~~~~~~~~~~a~~le~~- 161 (321)
T PRK10415 83 ARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDLVKSILTEVVNAVDVPVTLKIRTGWAPEHRNCVEIAQLAEDC- 161 (321)
T ss_pred HHHHHHCCCCEEEEeCCCCHHHHcCCCcccHHhcCHHHHHHHHHHHHHhcCCceEEEEEccccCCcchHHHHHHHHHHh-
Confidence 4445567888888887776 5444332221 246666777777665 355666555667644555677777777777
Q ss_pred CCCCeeeecc
Q 022946 262 THPESVPINA 271 (289)
Q Consensus 262 ~~~~~v~i~~ 271 (289)
+.+.+.++.
T Consensus 162 -G~d~i~vh~ 170 (321)
T PRK10415 162 -GIQALTIHG 170 (321)
T ss_pred -CCCEEEEec
Confidence 466666554
No 427
>COG0042 tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]
Probab=72.72 E-value=70 Score=28.49 Aligned_cols=126 Identities=23% Similarity=0.229 Sum_probs=71.9
Q ss_pred CCHHHHHHHHHHHHHcCCcEEEEecccC------CCCCCc--hhHHHHHHHHHHHHh-cC-ceEE--EeCCCC-----CH
Q 022946 122 MTKDAVMQAAQKAKEAGSTRFCMGAAWR------DTIGRK--TNFNQILEYVKDIRD-MG-MEVC--CTLGML-----EK 184 (289)
Q Consensus 122 ~~~eei~~~~~~~~~~g~~~i~i~~~~~------~~~ge~--~~~~~l~e~i~~ik~-~~-~~i~--~~~g~l-----~~ 184 (289)
-+++.+.+.++.+.+.|++.|-|..|-. .-.|.- ..-+.+.++++++++ .+ +.+. +..|.- ..
T Consensus 76 sdp~~l~eaA~~~~~~g~~~IdlN~GCP~~~V~~~g~Ga~Ll~~p~lv~~iv~a~~~av~~iPVTVKiRlG~d~~~~~~~ 155 (323)
T COG0042 76 SDPELLAEAAKIAEELGADIIDLNCGCPSPKVVKGGAGAALLKNPELLAEIVKAMVEAVGDIPVTVKIRLGWDDDDILAL 155 (323)
T ss_pred CCHHHHHHHHHHHHhcCCCEEeeeCCCChHHhcCCCcchhhcCCHHHHHHHHHHHHHhhCCCCeEEEEecccCcccccHH
Confidence 3678888888888889988776643200 001211 233666677777663 32 4443 345542 34
Q ss_pred HHHHHHHHcCCCeEecCCCchHHHHhccCCCCCHHHHHHHHHHHHHcCCceeecEEeecC--CCHHHHHHHHHHH
Q 022946 185 HQAIELKKAGLTAYNHNLDTSREFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGLG--EAEEDRVGLLHTL 257 (289)
Q Consensus 185 e~l~~L~~aG~~~v~i~let~~~~~~~i~~~~~~~~~~~~i~~~~~~Gi~v~~~~i~Glg--et~ed~~~~l~~l 257 (289)
+..+.+.++|++.+.+.--|....|.. +-+ .+.|..+++.=-. -.++|-| .+.+|..++++.-
T Consensus 156 ~ia~~~~~~g~~~ltVHgRtr~~~y~~---~ad----~~~I~~vk~~~~~---ipvi~NGdI~s~~~a~~~l~~t 220 (323)
T COG0042 156 EIARILEDAGADALTVHGRTRAQGYLG---PAD----WDYIKELKEAVPS---IPVIANGDIKSLEDAKEMLEYT 220 (323)
T ss_pred HHHHHHHhcCCCEEEEecccHHhcCCC---ccC----HHHHHHHHHhCCC---CeEEeCCCcCCHHHHHHHHHhh
Confidence 578899999999999877554222211 123 3444444442111 2244445 4888888888863
No 428
>PRK07329 hypothetical protein; Provisional
Probab=72.69 E-value=37 Score=28.78 Aligned_cols=69 Identities=17% Similarity=0.136 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHhcCceEEEeCCC--------CCHHHHHHHHHcCCCeEecCCCch-HHHHhccCCCCCHHHHHHHHHHHH
Q 022946 159 NQILEYVKDIRDMGMEVCCTLGM--------LEKHQAIELKKAGLTAYNHNLDTS-REFYSKIITTRSYDERLETLKHVR 229 (289)
Q Consensus 159 ~~l~e~i~~ik~~~~~i~~~~g~--------l~~e~l~~L~~aG~~~v~i~let~-~~~~~~i~~~~~~~~~~~~i~~~~ 229 (289)
+.+.++++.+++.++.+.+|.+. .....++..++.|+..|.+|-|+. ++... ..+-++++.++
T Consensus 165 ~~~~~i~~~~~~~~~~lEiNt~~~~~~~~~~~~~~~l~~~~~~g~~~i~~gSDAH~~~~vg--------~~~~~a~~~l~ 236 (246)
T PRK07329 165 PQLTRIFAKMIDNDLAFELNTKSMYLYGNEGLYRYAIELYKQLGGKLFSIGSDAHKLEHYR--------YNFDDAQKLLK 236 (246)
T ss_pred HHHHHHHHHHHHcCCeEEEECcccccCCCCcchHHHHHHHHHcCCeEEEecCCCCCHHHHH--------HHHHHHHHHHH
Confidence 44456667777777666555321 125568888999987789999886 54432 13456788888
Q ss_pred HcCCce
Q 022946 230 EAGINV 235 (289)
Q Consensus 230 ~~Gi~v 235 (289)
+.|++.
T Consensus 237 ~~g~~~ 242 (246)
T PRK07329 237 EHGIKE 242 (246)
T ss_pred HcCCce
Confidence 999874
No 429
>COG1816 Add Adenosine deaminase [Nucleotide transport and metabolism]
Probab=72.53 E-value=38 Score=30.46 Aligned_cols=84 Identities=11% Similarity=0.015 Sum_probs=55.4
Q ss_pred CCCCHHHHHHHHHHHHHcCCcEEEEecccCCCCCCchhHHHHHHHHHHHHhcCceEEEeCCC--CCHHHHHHHHHcCCCe
Q 022946 120 KLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMGMEVCCTLGM--LEKHQAIELKKAGLTA 197 (289)
Q Consensus 120 ~~~~~eei~~~~~~~~~~g~~~i~i~~~~~~~~ge~~~~~~l~e~i~~ik~~~~~i~~~~g~--l~~e~l~~L~~aG~~~ 197 (289)
+.++.+.+.++++......-..++ |.+.+..-.......+.++.+..+..|+.+..+.|. -.+-..+.+.-.|+++
T Consensus 148 r~~~~e~~~~~~~~a~~~~~~~~~--~~~l~~~e~~~p~~~f~~~f~~~r~~gl~lt~HaGE~~~~~~i~~al~~~~~~r 225 (345)
T COG1816 148 RHLGFESADEELELALRYRDKLVT--GVGLAGSESGYPPELFVSLFKLARDNGLKLTIHAGEAGGPESIRDALDLLGAER 225 (345)
T ss_pred eecCHHHHHHHHHHHhhcccccCc--cCCCCcccccCCHHHHHHHHHHHHHcCceEEEeccccCCcHHHHHHHHHhchhh
Confidence 446888888888776654333332 222221111134466777777777888888878773 4556678888899999
Q ss_pred EecCCCch
Q 022946 198 YNHNLDTS 205 (289)
Q Consensus 198 v~i~let~ 205 (289)
|.+|+-..
T Consensus 226 I~HGi~~~ 233 (345)
T COG1816 226 IGHGIRAI 233 (345)
T ss_pred hccccccc
Confidence 99999876
No 430
>PRK08673 3-deoxy-7-phosphoheptulonate synthase; Reviewed
Probab=72.53 E-value=68 Score=28.74 Aligned_cols=107 Identities=12% Similarity=0.206 Sum_probs=68.1
Q ss_pred CHHHHHHHHHHHHHcCCcEEEEecccCCCCCCc----hhHHHHHHHHHHHH-hcCceEEEeCCCCCHHHHHHHHHcCCCe
Q 022946 123 TKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRK----TNFNQILEYVKDIR-DMGMEVCCTLGMLEKHQAIELKKAGLTA 197 (289)
Q Consensus 123 ~~eei~~~~~~~~~~g~~~i~i~~~~~~~~ge~----~~~~~l~e~i~~ik-~~~~~i~~~~g~l~~e~l~~L~~aG~~~ 197 (289)
+.+.+++.++.+++.|.+-+ ..+.. -+--.| ..-+.=+++++.++ +.|+.+.++. ++.+.++.+.+. ++.
T Consensus 105 s~e~~~~~A~~lk~~ga~~~-r~~~f-KpRTsp~sf~G~g~~gL~~L~~~~~~~Gl~v~tev--~d~~~~~~l~~~-vd~ 179 (335)
T PRK08673 105 SEEQILEIARAVKEAGAQIL-RGGAF-KPRTSPYSFQGLGEEGLKLLAEAREETGLPIVTEV--MDPRDVELVAEY-VDI 179 (335)
T ss_pred CHHHHHHHHHHHHHhchhhc-cCcEe-cCCCCCcccccccHHHHHHHHHHHHHcCCcEEEee--CCHHHHHHHHHh-CCe
Confidence 67888999998888886522 11110 000001 01133444555544 7799887654 778889999988 999
Q ss_pred EecCCCch--HHHHhccCC---------C--CCHHHHHHHHHHHHHcCCc
Q 022946 198 YNHNLDTS--REFYSKIIT---------T--RSYDERLETLKHVREAGIN 234 (289)
Q Consensus 198 v~i~let~--~~~~~~i~~---------~--~~~~~~~~~i~~~~~~Gi~ 234 (289)
+.++--.. ..+++.+.+ + .+.++|+.+++.+...|-.
T Consensus 180 lqIgAr~~~N~~LL~~va~~~kPViLk~G~~~ti~E~l~A~e~i~~~GN~ 229 (335)
T PRK08673 180 LQIGARNMQNFDLLKEVGKTNKPVLLKRGMSATIEEWLMAAEYILAEGNP 229 (335)
T ss_pred EEECcccccCHHHHHHHHcCCCcEEEeCCCCCCHHHHHHHHHHHHHcCCC
Confidence 99864433 455554432 1 2689999999999988763
No 431
>PRK11815 tRNA-dihydrouridine synthase A; Provisional
Probab=72.48 E-value=34 Score=30.59 Aligned_cols=83 Identities=14% Similarity=0.138 Sum_probs=51.9
Q ss_pred HHHHHHHcCCCeEecCCCch-HHHHhccCCC---CCHHHHHHHHHHHHH-cCCceeecEEeec-C-CCHHHHHHHHHHHh
Q 022946 186 QAIELKKAGLTAYNHNLDTS-REFYSKIITT---RSYDERLETLKHVRE-AGINVCSGGIIGL-G-EAEEDRVGLLHTLA 258 (289)
Q Consensus 186 ~l~~L~~aG~~~v~i~let~-~~~~~~i~~~---~~~~~~~~~i~~~~~-~Gi~v~~~~i~Gl-g-et~ed~~~~l~~l~ 258 (289)
.++.++++|+|.|.+++-.. +.+...-.++ ...+...+.++.+++ .++.+..-+-+|. + ++.++..+.+..+.
T Consensus 82 aA~~~~~~g~d~IdlN~gCP~~~v~~~~~Gs~L~~~p~~~~eiv~avr~~v~~pVsvKiR~g~~~~~t~~~~~~~~~~l~ 161 (333)
T PRK11815 82 AAKLAEDWGYDEINLNVGCPSDRVQNGRFGACLMAEPELVADCVKAMKDAVSIPVTVKHRIGIDDQDSYEFLCDFVDTVA 161 (333)
T ss_pred HHHHHHhcCCCEEEEcCCCCHHHccCCCeeeHHhcCHHHHHHHHHHHHHHcCCceEEEEEeeeCCCcCHHHHHHHHHHHH
Confidence 35666777889888888666 5443221111 245666666666666 3667766666676 3 44566777777777
Q ss_pred cCCCCCCeeeec
Q 022946 259 TLPTHPESVPIN 270 (289)
Q Consensus 259 ~l~~~~~~v~i~ 270 (289)
+. +.+.+.++
T Consensus 162 ~a--G~d~i~vh 171 (333)
T PRK11815 162 EA--GCDTFIVH 171 (333)
T ss_pred Hh--CCCEEEEc
Confidence 77 46776655
No 432
>COG0148 Eno Enolase [Carbohydrate transport and metabolism]
Probab=72.47 E-value=60 Score=29.61 Aligned_cols=118 Identities=15% Similarity=0.212 Sum_probs=68.8
Q ss_pred CCCHHHHHHHHHHHHH-cCCcEEEEecccCCCCCCchhHHHHHHHHHHHHhcCceEEE-eCCCCCHHHHHHHHHcCC-Ce
Q 022946 121 LMTKDAVMQAAQKAKE-AGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMGMEVCC-TLGMLEKHQAIELKKAGL-TA 197 (289)
Q Consensus 121 ~~~~eei~~~~~~~~~-~g~~~i~i~~~~~~~~ge~~~~~~l~e~i~~ik~~~~~i~~-~~g~l~~e~l~~L~~aG~-~~ 197 (289)
.++.+|.++....+.+ +. -+.+- ++..| ..++.+.++.+.+... +.+.. ....-+.+.+++=.+.|+ +.
T Consensus 259 ~~~~~e~i~~~~~Lv~~Yp--ivsiE----Dpl~E-~Dweg~~~lt~~~g~k-vqivGDDLfvTN~~~l~~gi~~g~aNa 330 (423)
T COG0148 259 SLTSEELIEYYLELVKKYP--IVSIE----DPLSE-DDWEGFAELTKRLGDK-VQIVGDDLFVTNPKRLKKGIEKGAANA 330 (423)
T ss_pred ccCHHHHHHHHHHHHHhCC--EEEEc----CCCCc-hhHHHHHHHHHhhCCe-EEEECCcceecCHHHHHHHHHhccCce
Confidence 3677777777766654 43 23332 33443 3556666666655311 11110 111234555655555554 34
Q ss_pred EecCCCchHHHHhccCCCCCHHHHHHHHHHHHHcCCceeecEEeec--CCCHHHHHHHHHHHhcC
Q 022946 198 YNHNLDTSREFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGL--GEAEEDRVGLLHTLATL 260 (289)
Q Consensus 198 v~i~let~~~~~~~i~~~~~~~~~~~~i~~~~~~Gi~v~~~~i~Gl--get~ed~~~~l~~l~~l 260 (289)
|.+-+ +.-.+..+.+++++.++++|+.+ |+-+ |||.++.+.++.-.-..
T Consensus 331 iLIK~----------NQIGTLTEt~~ai~~A~~~gy~~----viSHRSGETeD~tIAdLAVa~~a 381 (423)
T COG0148 331 ILIKP----------NQIGTLTETLEAINLAKDAGYTA----VISHRSGETEDTTIADLAVATNA 381 (423)
T ss_pred EEEec----------hhcccHHHHHHHHHHHHHCCCeE----EEecCCCCcccchHHHHHHHhCC
Confidence 44433 22258899999999999999875 5556 99999888777665443
No 433
>PRK06106 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=72.43 E-value=30 Score=30.12 Aligned_cols=42 Identities=12% Similarity=0.133 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHcCCCeEecCC
Q 022946 159 NQILEYVKDIRDMGMEVCCTLGMLEKHQAIELKKAGLTAYNHNL 202 (289)
Q Consensus 159 ~~l~e~i~~ik~~~~~i~~~~g~l~~e~l~~L~~aG~~~v~i~l 202 (289)
+.+.++++.++... .+..+ |-++.+.+.++.+.|+|.|++|-
T Consensus 226 e~l~~av~~~~~~~-~leaS-GGI~~~ni~~yA~tGVD~Is~Ga 267 (281)
T PRK06106 226 DTLREAVAIVAGRA-ITEAS-GRITPETAPAIAASGVDLISVGW 267 (281)
T ss_pred HHHHHHHHHhCCCc-eEEEE-CCCCHHHHHHHHhcCCCEEEeCh
Confidence 66666666554332 24444 44889999999999999999875
No 434
>COG0106 HisA Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase [Amino acid transport and metabolism]
Probab=72.42 E-value=36 Score=28.86 Aligned_cols=73 Identities=18% Similarity=0.229 Sum_probs=49.5
Q ss_pred HHHHHHHHHHHcCCcEEEEecccCC-CCCCchhHHHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHc-CCCeEecCC
Q 022946 126 AVMQAAQKAKEAGSTRFCMGAAWRD-TIGRKTNFNQILEYVKDIRDMGMEVCCTLGMLEKHQAIELKKA-GLTAYNHNL 202 (289)
Q Consensus 126 ei~~~~~~~~~~g~~~i~i~~~~~~-~~ge~~~~~~l~e~i~~ik~~~~~i~~~~g~l~~e~l~~L~~a-G~~~v~i~l 202 (289)
++.+.++++.+.|..+|.++.-..+ +...+ +++-+.++.+.. .+++..+.|.-+.+.++.|++. |+..+-+|=
T Consensus 148 ~~~~l~~~~~~~g~~~ii~TdI~~DGtl~G~-n~~l~~~l~~~~---~ipviaSGGv~s~~Di~~l~~~~G~~GvIvG~ 222 (241)
T COG0106 148 ELEELAKRLEEVGLAHILYTDISRDGTLSGP-NVDLVKELAEAV---DIPVIASGGVSSLDDIKALKELSGVEGVIVGR 222 (241)
T ss_pred CHHHHHHHHHhcCCCeEEEEecccccccCCC-CHHHHHHHHHHh---CcCEEEecCcCCHHHHHHHHhcCCCcEEEEeh
Confidence 3445555677889999877653221 11112 445555555444 7788889999999999999999 888877763
No 435
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=72.41 E-value=41 Score=25.75 Aligned_cols=70 Identities=9% Similarity=0.075 Sum_probs=41.9
Q ss_pred CCHHHHHHHHHHHHHcCCcEEEEecccCCCCCCchhHHHHHHHHHHHHhc---CceEEEeCCC-----CCHHHHHHHHHc
Q 022946 122 MTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDM---GMEVCCTLGM-----LEKHQAIELKKA 193 (289)
Q Consensus 122 ~~~eei~~~~~~~~~~g~~~i~i~~~~~~~~ge~~~~~~l~e~i~~ik~~---~~~i~~~~g~-----l~~e~l~~L~~a 193 (289)
.|++++.+.+. +.+.+-+.++... + .....+.++++.+++. ++.+..-... ...+..++|++.
T Consensus 41 vp~e~i~~~a~---~~~~d~V~lS~~~----~--~~~~~~~~~~~~L~~~~~~~~~i~vGG~~~~~~~~~~~~~~~l~~~ 111 (137)
T PRK02261 41 TSQEEFIDAAI---ETDADAILVSSLY----G--HGEIDCRGLREKCIEAGLGDILLYVGGNLVVGKHDFEEVEKKFKEM 111 (137)
T ss_pred CCHHHHHHHHH---HcCCCEEEEcCcc----c--cCHHHHHHHHHHHHhcCCCCCeEEEECCCCCCccChHHHHHHHHHc
Confidence 58888888765 5567777664411 1 2445556666666644 3444332111 245667899999
Q ss_pred CCCeEec
Q 022946 194 GLTAYNH 200 (289)
Q Consensus 194 G~~~v~i 200 (289)
|++.+..
T Consensus 112 G~~~vf~ 118 (137)
T PRK02261 112 GFDRVFP 118 (137)
T ss_pred CCCEEEC
Confidence 9988775
No 436
>COG0134 TrpC Indole-3-glycerol phosphate synthase [Amino acid transport and metabolism]
Probab=72.30 E-value=44 Score=28.59 Aligned_cols=93 Identities=16% Similarity=0.190 Sum_probs=60.5
Q ss_pred CCHHHHHHHHHHHHHcCCcEEEEecccCCCCCCchhHHHHHHHHHHHH-hcCceEEEeCCCCCHHHHHHHHHcCCCeEec
Q 022946 122 MTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIR-DMGMEVCCTLGMLEKHQAIELKKAGLTAYNH 200 (289)
Q Consensus 122 ~~~eei~~~~~~~~~~g~~~i~i~~~~~~~~ge~~~~~~l~e~i~~ik-~~~~~i~~~~g~l~~e~l~~L~~aG~~~v~i 200 (289)
.++.++. +...+.|..-+.+..... +|..=.+.++.++ ...+++..-...+++.++.+-+.+|.|.|.+
T Consensus 66 ~dp~~ia---~~Ye~~GAa~iSVLTd~~-------~F~Gs~e~L~~v~~~v~~PvL~KDFiiD~yQI~~Ar~~GADavLL 135 (254)
T COG0134 66 FDPVEIA---KAYEEGGAAAISVLTDPK-------YFQGSFEDLRAVRAAVDLPVLRKDFIIDPYQIYEARAAGADAVLL 135 (254)
T ss_pred CCHHHHH---HHHHHhCCeEEEEecCcc-------ccCCCHHHHHHHHHhcCCCeeeccCCCCHHHHHHHHHcCcccHHH
Confidence 3555544 445567787776654222 2222333445555 4578888888889999999999999998876
Q ss_pred CCCchHHHHhccCCCCCHHHHHHHHHHHHHcCCce
Q 022946 201 NLDTSREFYSKIITTRSYDERLETLKHVREAGINV 235 (289)
Q Consensus 201 ~let~~~~~~~i~~~~~~~~~~~~i~~~~~~Gi~v 235 (289)
=+... +-++..+.++.+++.|+.+
T Consensus 136 I~~~L-----------~~~~l~el~~~A~~LGm~~ 159 (254)
T COG0134 136 IVAAL-----------DDEQLEELVDRAHELGMEV 159 (254)
T ss_pred HHHhc-----------CHHHHHHHHHHHHHcCCee
Confidence 54332 3345566777778888764
No 437
>COG1692 Calcineurin-like phosphoesterase [General function prediction only]
Probab=72.20 E-value=27 Score=29.67 Aligned_cols=62 Identities=16% Similarity=0.216 Sum_probs=42.1
Q ss_pred CCCchhHHHHHHHHHHHH-hcCceEEEe------CCC-CCHHHHHHHHHcCCCeEecCCCch--HHHHhccCC
Q 022946 152 IGRKTNFNQILEYVKDIR-DMGMEVCCT------LGM-LEKHQAIELKKAGLTAYNHNLDTS--REFYSKIIT 214 (289)
Q Consensus 152 ~ge~~~~~~l~e~i~~ik-~~~~~i~~~------~g~-l~~e~l~~L~~aG~~~v~i~let~--~~~~~~i~~ 214 (289)
.|.+ -..-+.+.+..+| ++.+.+.+. .|- ++++.++.|+++|+|.+..|=.+. ++.++-+..
T Consensus 10 vGk~-Gr~~v~~~Lp~lk~kyk~dfvI~N~ENaa~G~Git~k~y~~l~~~G~dviT~GNH~wd~~ei~~~i~~ 81 (266)
T COG1692 10 VGKP-GRKAVKEHLPQLKSKYKIDFVIVNGENAAGGFGITEKIYKELLEAGADVITLGNHTWDQKEILDFIDN 81 (266)
T ss_pred cCcc-hHHHHHHHhHHHHHhhcCcEEEEcCccccCCcCCCHHHHHHHHHhCCCEEecccccccchHHHHHhhc
Confidence 3433 4466677777777 455553322 232 899999999999999999988776 566665543
No 438
>TIGR01334 modD putative molybdenum utilization protein ModD. The gene modD for a member of this family is found with molybdenum transport genes modABC in Rhodobacter capsulatus. However, disruption of modD causes only a 4-fold (rather than 500-fold for modA, modB, modC) change in the external molybdenum concentration required to suppress an alternative nitrogenase. ModD proteins are highly similar to nicotinate-nucleotide pyrophosphorylase (also called quinolinate phosphoribosyltransferase). The function unknown.
Probab=72.14 E-value=29 Score=30.14 Aligned_cols=60 Identities=8% Similarity=0.111 Sum_probs=40.4
Q ss_pred HHHHcCCcEEEEecccCCCCCCchhHHHHHHHHHHHHhc--CceEEEeCCCCCHHHHHHHHHcCCCeEecCC
Q 022946 133 KAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDM--GMEVCCTLGMLEKHQAIELKKAGLTAYNHNL 202 (289)
Q Consensus 133 ~~~~~g~~~i~i~~~~~~~~ge~~~~~~l~e~i~~ik~~--~~~i~~~~g~l~~e~l~~L~~aG~~~v~i~l 202 (289)
++.+.|++.+-+- + ...+.+.+.++.+++. ++.+..+.| ++.+.+.++.+.|+|.++.|.
T Consensus 203 ea~~~GaDiI~lD----n-----~~~e~l~~~v~~l~~~~~~~~leasGG-I~~~ni~~ya~~GvD~is~ga 264 (277)
T TIGR01334 203 TVLQASPDILQLD----K-----FTPQQLHHLHERLKFFDHIPTLAAAGG-INPENIADYIEAGIDLFITSA 264 (277)
T ss_pred HHHHcCcCEEEEC----C-----CCHHHHHHHHHHHhccCCCEEEEEECC-CCHHHHHHHHhcCCCEEEeCc
Confidence 3445677666442 1 2346777777777633 444444444 889999999999999999865
No 439
>KOG2599 consensus Pyridoxal/pyridoxine/pyridoxamine kinase [Coenzyme transport and metabolism]
Probab=72.13 E-value=65 Score=27.88 Aligned_cols=111 Identities=8% Similarity=0.141 Sum_probs=68.8
Q ss_pred CcCCCCHHHHHHHHHHHHHc---CCcEEEEecccCCCCCCchhHHHHHHHHHHHHhcCce--EEE-----eCC--CCCHH
Q 022946 118 GQKLMTKDAVMQAAQKAKEA---GSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMGME--VCC-----TLG--MLEKH 185 (289)
Q Consensus 118 ~~~~~~~eei~~~~~~~~~~---g~~~i~i~~~~~~~~ge~~~~~~l~e~i~~ik~~~~~--i~~-----~~g--~l~~e 185 (289)
+....+.+|+.+..+-+... +++.+ ++|- .+....+..+.++++.+|+.+.+ +.+ .+| +.+++
T Consensus 58 kG~~~~~~eL~dL~egl~~nn~~~Y~~v-LTGY----~~n~~~l~~i~~iv~~lk~~np~~~wv~DPVmGDnG~lYV~ee 132 (308)
T KOG2599|consen 58 KGQVLNEEELEDLYEGLLLNNLNKYDAV-LTGY----LPNVSFLQKIADIVKKLKKKNPNLTWVCDPVMGDNGRLYVPEE 132 (308)
T ss_pred cccccCHHHHHHHHHHHhhcccccccee-eeec----cCChhHHHHHHHHHHHHHhcCCCeEEEeCccccCCccEeccHH
Confidence 34457889988888766543 23333 4441 34567889999999999966433 322 355 36888
Q ss_pred HHHHHHHcCCC-eEecCCCch-HHHHhccCCCCCHHHHHHHHHHHHHcCCc
Q 022946 186 QAIELKKAGLT-AYNHNLDTS-REFYSKIITTRSYDERLETLKHVREAGIN 234 (289)
Q Consensus 186 ~l~~L~~aG~~-~v~i~let~-~~~~~~i~~~~~~~~~~~~i~~~~~~Gi~ 234 (289)
.+...++.=+. .--+.-+.+ .|.+-.+ +-++-++.+++++.+++.|++
T Consensus 133 lipvYr~~i~~ladiiTPNqFE~EiLtg~-~I~t~eda~~a~~~lhq~~v~ 182 (308)
T KOG2599|consen 133 LIPVYRDLIIPLADIITPNQFEAEILTGM-EIRTEEDAKRAVEKLHQKGVK 182 (308)
T ss_pred HHHHHHHhhcchhhhcCCcchhhhhhcCC-eeccHHHHHHHHHHHHHhCCC
Confidence 88887776332 011222223 2332221 235889999999999999976
No 440
>PRK00748 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated
Probab=72.07 E-value=37 Score=28.26 Aligned_cols=67 Identities=19% Similarity=0.240 Sum_probs=43.6
Q ss_pred HHHHHHHHcCCcEEEEecccCC--CCCCchhHHHHHHHHHHHH-hcCceEEEeCCCCCHHHHHHHHHcC-CCeEecC
Q 022946 129 QAAQKAKEAGSTRFCMGAAWRD--TIGRKTNFNQILEYVKDIR-DMGMEVCCTLGMLEKHQAIELKKAG-LTAYNHN 201 (289)
Q Consensus 129 ~~~~~~~~~g~~~i~i~~~~~~--~~ge~~~~~~l~e~i~~ik-~~~~~i~~~~g~l~~e~l~~L~~aG-~~~v~i~ 201 (289)
+.++.+.+.|+..+.+.+-..+ ..| ..+ +.++.++ ...+++..+.|..+.+.++++.+.| ++.+-++
T Consensus 150 e~~~~~~~~g~~~ii~~~~~~~g~~~G--~d~----~~i~~l~~~~~ipvia~GGi~~~~di~~~~~~g~~~gv~vg 220 (233)
T PRK00748 150 DLAKRFEDAGVKAIIYTDISRDGTLSG--PNV----EATRELAAAVPIPVIASGGVSSLDDIKALKGLGAVEGVIVG 220 (233)
T ss_pred HHHHHHHhcCCCEEEEeeecCcCCcCC--CCH----HHHHHHHHhCCCCEEEeCCCCCHHHHHHHHHcCCccEEEEE
Confidence 3444556788988877643221 112 122 3344444 2367888888899999999999988 9988775
No 441
>cd00950 DHDPS Dihydrodipicolinate synthase (DHDPS) is a key enzyme in lysine biosynthesis. It catalyzes the aldol condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a Schiff base formation between pyruvate and a lysine residue. The functional enzyme is a homotetramer consisting of a dimer of dimers. DHDPS is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways.
Probab=71.87 E-value=29 Score=30.05 Aligned_cols=95 Identities=15% Similarity=0.124 Sum_probs=56.1
Q ss_pred chhHHHHHHHHHHHHhcCceEEE---eCC---CCCHHHHHHHHHcCCCe------EecCCCchHHHHhccCCCCCHHHHH
Q 022946 155 KTNFNQILEYVKDIRDMGMEVCC---TLG---MLEKHQAIELKKAGLTA------YNHNLDTSREFYSKIITTRSYDERL 222 (289)
Q Consensus 155 ~~~~~~l~e~i~~ik~~~~~i~~---~~g---~l~~e~l~~L~~aG~~~------v~i~let~~~~~~~i~~~~~~~~~~ 222 (289)
..+.+.+.+.++.+.+.|+.... +.| .++.+.-.++.+.-++. +.+++ ...+.++.+
T Consensus 17 ~iD~~~~~~~i~~l~~~Gv~gl~v~GstGE~~~lt~~Er~~l~~~~~~~~~~~~~vi~gv-----------~~~~~~~~~ 85 (284)
T cd00950 17 SVDFDALERLIEFQIENGTDGLVVCGTTGESPTLSDEEHEAVIEAVVEAVNGRVPVIAGT-----------GSNNTAEAI 85 (284)
T ss_pred CcCHHHHHHHHHHHHHcCCCEEEECCCCcchhhCCHHHHHHHHHHHHHHhCCCCcEEecc-----------CCccHHHHH
Confidence 35677888888877777766322 223 25666555554431211 11222 124678889
Q ss_pred HHHHHHHHcCCceeecEEeec-CCCHHHHHHHHHHHhcC
Q 022946 223 ETLKHVREAGINVCSGGIIGL-GEAEEDRVGLLHTLATL 260 (289)
Q Consensus 223 ~~i~~~~~~Gi~v~~~~i~Gl-get~ed~~~~l~~l~~l 260 (289)
+..+.+.+.|.....-+...+ .-+.+++.+..+.+.+-
T Consensus 86 ~~a~~a~~~G~d~v~~~~P~~~~~~~~~l~~~~~~ia~~ 124 (284)
T cd00950 86 ELTKRAEKAGADAALVVTPYYNKPSQEGLYAHFKAIAEA 124 (284)
T ss_pred HHHHHHHHcCCCEEEEcccccCCCCHHHHHHHHHHHHhc
Confidence 999999999987322222223 45678888888777663
No 442
>PRK09016 quinolinate phosphoribosyltransferase; Validated
Probab=71.60 E-value=32 Score=30.16 Aligned_cols=42 Identities=14% Similarity=0.082 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHcCCCeEecCC
Q 022946 159 NQILEYVKDIRDMGMEVCCTLGMLEKHQAIELKKAGLTAYNHNL 202 (289)
Q Consensus 159 ~~l~e~i~~ik~~~~~i~~~~g~l~~e~l~~L~~aG~~~v~i~l 202 (289)
+.+.++++.++. .+.+..+.| ++.+.+.++.+.|+|.|++|-
T Consensus 240 e~~~~av~~~~~-~~~ieaSGG-I~~~ni~~yA~tGVD~Is~ga 281 (296)
T PRK09016 240 EQMREAVKRTNG-RALLEVSGN-VTLETLREFAETGVDFISVGA 281 (296)
T ss_pred HHHHHHHHhhcC-CeEEEEECC-CCHHHHHHHHhcCCCEEEeCc
Confidence 566666665543 344555444 889999999999999999875
No 443
>cd02933 OYE_like_FMN Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include 12-oxophytodienoate reductase, pentaerythritol tetranitrate reductase, morphinone reductase, and related enzymes.
Probab=71.14 E-value=26 Score=31.43 Aligned_cols=86 Identities=8% Similarity=0.031 Sum_probs=40.2
Q ss_pred CHHHHHHHHHHHHHcCCcEEEEecccCCCCCCchhHHHHHHHHHHHH-hcCceEEEeCCCCCHHHHHHHHHcC-CCeEec
Q 022946 123 TKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIR-DMGMEVCCTLGMLEKHQAIELKKAG-LTAYNH 200 (289)
Q Consensus 123 ~~eei~~~~~~~~~~g~~~i~i~~~~~~~~ge~~~~~~l~e~i~~ik-~~~~~i~~~~g~l~~e~l~~L~~aG-~~~v~i 200 (289)
+.++.++.++.+.+.|++.+.+..+...... -....+.++.+| ...+.+..+.+. +.+.++++.+.| +|.|.+
T Consensus 239 ~~ee~~~~~~~l~~~g~d~i~vs~g~~~~~~----~~~~~~~~~~ik~~~~ipvi~~G~i-~~~~a~~~l~~g~~D~V~~ 313 (338)
T cd02933 239 PEATFSYLAKELNKRGLAYLHLVEPRVAGNP----EDQPPDFLDFLRKAFKGPLIAAGGY-DAESAEAALADGKADLVAF 313 (338)
T ss_pred CHHHHHHHHHHHHHcCCcEEEEecCCCCCcc----cccchHHHHHHHHHcCCCEEEECCC-CHHHHHHHHHcCCCCEEEe
Confidence 4566666666666666666655332211100 112233334444 234555544443 355555555543 676666
Q ss_pred CCCch--HHHHhccC
Q 022946 201 NLDTS--REFYSKII 213 (289)
Q Consensus 201 ~let~--~~~~~~i~ 213 (289)
+=... |+..+++.
T Consensus 314 gR~~ladP~~~~k~~ 328 (338)
T cd02933 314 GRPFIANPDLVERLK 328 (338)
T ss_pred CHhhhhCcCHHHHHh
Confidence 54332 44444443
No 444
>PRK07107 inosine 5-monophosphate dehydrogenase; Validated
Probab=71.10 E-value=26 Score=33.24 Aligned_cols=76 Identities=16% Similarity=0.190 Sum_probs=53.6
Q ss_pred CHHHHHHHHHHHHHcCCcEEEEecccCCCCCCchhHHHHHHHHHHHHh-cCceEEEeCC-CCCHHHHHHHHHcCCCeEec
Q 022946 123 TKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRD-MGMEVCCTLG-MLEKHQAIELKKAGLTAYNH 200 (289)
Q Consensus 123 ~~eei~~~~~~~~~~g~~~i~i~~~~~~~~ge~~~~~~l~e~i~~ik~-~~~~i~~~~g-~l~~e~l~~L~~aG~~~v~i 200 (289)
.+++..+.++.+.+.|++.+++... +.+-...++.++.+++ .+-.+.+-.| ..+.+.++.|.++|+|.|.+
T Consensus 239 ~~~~~~~ra~~Lv~aGvd~i~vd~a-------~g~~~~~~~~i~~ir~~~~~~~~V~aGnV~t~e~a~~li~aGAd~I~v 311 (502)
T PRK07107 239 NTRDYAERVPALVEAGADVLCIDSS-------EGYSEWQKRTLDWIREKYGDSVKVGAGNVVDREGFRYLAEAGADFVKV 311 (502)
T ss_pred ChhhHHHHHHHHHHhCCCeEeecCc-------ccccHHHHHHHHHHHHhCCCCceEEeccccCHHHHHHHHHcCCCEEEE
Confidence 4456778888888999998877421 1233566788888884 3322322333 57899999999999999988
Q ss_pred CCCch
Q 022946 201 NLDTS 205 (289)
Q Consensus 201 ~let~ 205 (289)
|+-..
T Consensus 312 g~g~G 316 (502)
T PRK07107 312 GIGGG 316 (502)
T ss_pred CCCCC
Confidence 77665
No 445
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit. This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=71.06 E-value=42 Score=25.71 Aligned_cols=81 Identities=12% Similarity=0.021 Sum_probs=53.0
Q ss_pred HHhcCceEEEeCC--CCCHHHHHHHHHcCCCeEecCCCchHHHHhccCCCCCHHHHHHHHHHHHHcCCceeecEEeec--
Q 022946 168 IRDMGMEVCCTLG--MLEKHQAIELKKAGLTAYNHNLDTSREFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGL-- 243 (289)
Q Consensus 168 ik~~~~~i~~~~g--~l~~e~l~~L~~aG~~~v~i~let~~~~~~~i~~~~~~~~~~~~i~~~~~~Gi~v~~~~i~Gl-- 243 (289)
++..|+++. +.| ...++.++..++.+.+.|.+|.=. +.+.+...+.++.+++.|+.-. -+++|=
T Consensus 25 l~~~GfeVi-~LG~~v~~e~~v~aa~~~~adiVglS~l~----------~~~~~~~~~~~~~l~~~gl~~~-~vivGG~~ 92 (134)
T TIGR01501 25 FTNAGFNVV-NLGVLSPQEEFIKAAIETKADAILVSSLY----------GHGEIDCKGLRQKCDEAGLEGI-LLYVGGNL 92 (134)
T ss_pred HHHCCCEEE-ECCCCCCHHHHHHHHHHcCCCEEEEeccc----------ccCHHHHHHHHHHHHHCCCCCC-EEEecCCc
Confidence 456788874 333 345667788888888888876411 3566777888889999998532 255542
Q ss_pred CCCHHHHHHHHHHHhcC
Q 022946 244 GEAEEDRVGLLHTLATL 260 (289)
Q Consensus 244 get~ed~~~~l~~l~~l 260 (289)
.-..+|..+....++++
T Consensus 93 vi~~~d~~~~~~~l~~~ 109 (134)
T TIGR01501 93 VVGKQDFPDVEKRFKEM 109 (134)
T ss_pred CcChhhhHHHHHHHHHc
Confidence 12456666666677777
No 446
>PRK11449 putative deoxyribonuclease YjjV; Provisional
Probab=70.95 E-value=4.3 Score=34.83 Aligned_cols=48 Identities=10% Similarity=-0.070 Sum_probs=39.1
Q ss_pred CCcccc-ccccccccccchHHHHHHHHHhcCCCCCCCHHHHHHhhCCChHHH
Q 022946 19 SKKFLA-LHSSCSCYSASAAAIEAERTIREGPRHDWSKDDIKSIYDSPVLDL 69 (289)
Q Consensus 19 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~ee~~~l~~~~~~~l 69 (289)
-+||++ .|.++.+|.|.++..+++.+++ -.+.+.+|+...+..+...+
T Consensus 207 D~P~l~p~~~~~~~n~p~~~~~~~~~ia~---l~~~~~~el~~~~~~N~~~l 255 (258)
T PRK11449 207 DAPDMPLNGFQGQPNRPEQAARVFDVLCE---LRPEPADEIAEVLLNNTYTL 255 (258)
T ss_pred CCCCCCCCCCCCCCCCChHHHHHHHHHHH---HHCcCHHHHHHHHHHHHHHH
Confidence 489988 6789999999999999999999 78889998877665554443
No 447
>cd02931 ER_like_FMN Enoate reductase (ER)-like FMN-binding domain. Enoate reductase catalyzes the NADH-dependent reduction of carbon-carbon double bonds of several molecules, including nonactivated 2-enoates, alpha,beta-unsaturated aldehydes, cyclic ketones, and methylketones. ERs are similar to 2,4-dienoyl-CoA reductase from E. coli and to the old yellow enzyme from Saccharomyces cerevisiae.
Probab=70.84 E-value=39 Score=30.85 Aligned_cols=95 Identities=19% Similarity=0.140 Sum_probs=61.8
Q ss_pred CCHHHHHHHHHHHHHcCCcEEEEecccCCC--CCCc-h--hHHHHHHHHHHHH-hcCceEEEeCCCCCHHHHHHHHHcC-
Q 022946 122 MTKDAVMQAAQKAKEAGSTRFCMGAAWRDT--IGRK-T--NFNQILEYVKDIR-DMGMEVCCTLGMLEKHQAIELKKAG- 194 (289)
Q Consensus 122 ~~~eei~~~~~~~~~~g~~~i~i~~~~~~~--~ge~-~--~~~~l~e~i~~ik-~~~~~i~~~~g~l~~e~l~~L~~aG- 194 (289)
++.++.++.++.+.+.|++.+.+.++.... ...+ . ......+.++.+| ..++.+..+.+..+.+.++++.+.|
T Consensus 249 ~~~e~~~~~~~~l~~~gvD~l~vs~g~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~pvi~~G~i~~~~~~~~~l~~g~ 328 (382)
T cd02931 249 RDLEEGLKAAKILEEAGYDALDVDAGSYDAWYWNHPPMYQKKGMYLPYCKALKEVVDVPVIMAGRMEDPELASEAINEGI 328 (382)
T ss_pred CCHHHHHHHHHHHHHhCCCEEEeCCCCCcccccccCCccCCcchhHHHHHHHHHHCCCCEEEeCCCCCHHHHHHHHHcCC
Confidence 477888889999988999999887653211 0001 0 0112345556666 3577787777777888887777765
Q ss_pred CCeEecCCCch--HHHHhccCCCC
Q 022946 195 LTAYNHNLDTS--REFYSKIITTR 216 (289)
Q Consensus 195 ~~~v~i~let~--~~~~~~i~~~~ 216 (289)
+|.|.++=-.. |+..+++..+.
T Consensus 329 ~D~V~~gR~~ladP~l~~k~~~g~ 352 (382)
T cd02931 329 ADMISLGRPLLADPDVVNKIRRGR 352 (382)
T ss_pred CCeeeechHhHhCccHHHHHHcCC
Confidence 89998874443 66666665543
No 448
>PLN02321 2-isopropylmalate synthase
Probab=70.82 E-value=45 Score=32.65 Aligned_cols=64 Identities=16% Similarity=0.206 Sum_probs=32.2
Q ss_pred CCHHHHHHHHH----HHHHcCCcEEEEecccCCCCCCchhHHHHHHHHHHHHhcCce---EEEeCCCCCHHHHHH
Q 022946 122 MTKDAVMQAAQ----KAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMGME---VCCTLGMLEKHQAIE 189 (289)
Q Consensus 122 ~~~eei~~~~~----~~~~~g~~~i~i~~~~~~~~ge~~~~~~l~e~i~~ik~~~~~---i~~~~g~l~~e~l~~ 189 (289)
++.+|+++.+. .+++.|...+.|..- + +.....++++++++.+.+.|.. +.-|.|..+++.+..
T Consensus 203 ~t~ee~l~~~~~~V~~Ak~~G~~~v~fs~E--D--a~rtd~d~l~~~~~~a~~aGa~~I~L~DTvG~~~P~~v~~ 273 (632)
T PLN02321 203 KTPDEVVEIARDMVKYARSLGCEDVEFSPE--D--AGRSDPEFLYRILGEVIKAGATTLNIPDTVGYTLPSEFGQ 273 (632)
T ss_pred CCHHHHHHHHHHHHHHHHHcCCceEEEecc--c--CCCCCHHHHHHHHHHHHHcCCCEEEecccccCCCHHHHHH
Confidence 56666555443 334455545555321 1 1134556666666666655543 334566655554433
No 449
>PRK08883 ribulose-phosphate 3-epimerase; Provisional
Probab=70.67 E-value=62 Score=27.04 Aligned_cols=72 Identities=11% Similarity=0.136 Sum_probs=43.7
Q ss_pred CHHHHHHHHHHHHHcCCcEEEEecccCCCCCCchhHHHHHHHHHHHHh----cC--ceEEEeCCCCCHHHHHHHHHcCCC
Q 022946 123 TKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRD----MG--MEVCCTLGMLEKHQAIELKKAGLT 196 (289)
Q Consensus 123 ~~eei~~~~~~~~~~g~~~i~i~~~~~~~~ge~~~~~~l~e~i~~ik~----~~--~~i~~~~g~l~~e~l~~L~~aG~~ 196 (289)
+.+.+...+. -++.|.+.+....++| ..+.+..++.++.+++ .+ +.+.+. |-++.+.+..+.++|+|
T Consensus 118 p~~~i~~~l~-----~~D~vlvMtV~PGfgG-q~fi~~~lekI~~l~~~~~~~~~~~~I~vd-GGI~~eni~~l~~aGAd 190 (220)
T PRK08883 118 PLHHLEYIMD-----KVDLILLMSVNPGFGG-QSFIPHTLDKLRAVRKMIDESGRDIRLEID-GGVKVDNIREIAEAGAD 190 (220)
T ss_pred CHHHHHHHHH-----hCCeEEEEEecCCCCC-ceecHhHHHHHHHHHHHHHhcCCCeeEEEE-CCCCHHHHHHHHHcCCC
Confidence 4455444433 2355655554433334 3455666666666553 23 445554 44779999999999999
Q ss_pred eEecC
Q 022946 197 AYNHN 201 (289)
Q Consensus 197 ~v~i~ 201 (289)
.+.+|
T Consensus 191 ~vVvG 195 (220)
T PRK08883 191 MFVAG 195 (220)
T ss_pred EEEEe
Confidence 99876
No 450
>PRK06978 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=70.53 E-value=38 Score=29.71 Aligned_cols=61 Identities=10% Similarity=0.051 Sum_probs=38.4
Q ss_pred HHHHcCCcEEEEecccCCCCCCchhHHHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHcCCCeEecCCCc
Q 022946 133 KAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMGMEVCCTLGMLEKHQAIELKKAGLTAYNHNLDT 204 (289)
Q Consensus 133 ~~~~~g~~~i~i~~~~~~~~ge~~~~~~l~e~i~~ik~~~~~i~~~~g~l~~e~l~~L~~aG~~~v~i~let 204 (289)
++.+.|++.|-+ . +. ..+.+.++++.++. .+.+..+. -++.+.+.++.+.|+|.|++|-=+
T Consensus 220 eA~~aGaDiImL-D---nm-----spe~l~~av~~~~~-~~~lEaSG-GIt~~ni~~yA~tGVD~IS~galt 280 (294)
T PRK06978 220 TALAHGAQSVLL-D---NF-----TLDMMREAVRVTAG-RAVLEVSG-GVNFDTVRAFAETGVDRISIGALT 280 (294)
T ss_pred HHHHcCCCEEEE-C---CC-----CHHHHHHHHHhhcC-CeEEEEEC-CCCHHHHHHHHhcCCCEEEeCccc
Confidence 344567765543 1 11 23556666655543 33444444 488999999999999999987533
No 451
>PRK12595 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase; Reviewed
Probab=70.29 E-value=85 Score=28.45 Aligned_cols=106 Identities=10% Similarity=0.092 Sum_probs=69.6
Q ss_pred CHHHHHHHHHHHHHcCCcEEEEecccCCCCCCc-----hhHHHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHcCCCe
Q 022946 123 TKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRK-----TNFNQILEYVKDIRDMGMEVCCTLGMLEKHQAIELKKAGLTA 197 (289)
Q Consensus 123 ~~eei~~~~~~~~~~g~~~i~i~~~~~~~~ge~-----~~~~~l~e~i~~ik~~~~~i~~~~g~l~~e~l~~L~~aG~~~ 197 (289)
+.+.+++.++.+++.|+.-+ ..+.+. +--.| ...+.+..+-+..++.|+.+.++. .+.+.++.+.+. ++.
T Consensus 130 ~~~~~~~~A~~lk~~g~~~~-r~~~~k-pRtsp~~f~g~~~e~l~~L~~~~~~~Gl~~~t~v--~d~~~~~~l~~~-vd~ 204 (360)
T PRK12595 130 SYEQVEAVAKALKAKGLKLL-RGGAFK-PRTSPYDFQGLGVEGLKILKQVADEYGLAVISEI--VNPADVEVALDY-VDV 204 (360)
T ss_pred CHHHHHHHHHHHHHcCCcEE-EccccC-CCCCCccccCCCHHHHHHHHHHHHHcCCCEEEee--CCHHHHHHHHHh-CCe
Confidence 56888999999998887543 333221 11111 122444444444457899887754 678889999999 999
Q ss_pred EecCC-Cch-HHHHhccCC---------C--CCHHHHHHHHHHHHHcCC
Q 022946 198 YNHNL-DTS-REFYSKIIT---------T--RSYDERLETLKHVREAGI 233 (289)
Q Consensus 198 v~i~l-et~-~~~~~~i~~---------~--~~~~~~~~~i~~~~~~Gi 233 (289)
+.++- +.. -++++.+.. + .+.++|..+++.+.+.|-
T Consensus 205 lkI~s~~~~n~~LL~~~a~~gkPVilk~G~~~t~~e~~~Ave~i~~~Gn 253 (360)
T PRK12595 205 IQIGARNMQNFELLKAAGRVNKPVLLKRGLSATIEEFIYAAEYIMSQGN 253 (360)
T ss_pred EEECcccccCHHHHHHHHccCCcEEEeCCCCCCHHHHHHHHHHHHHCCC
Confidence 98853 443 455554432 2 268999999999988775
No 452
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=70.23 E-value=61 Score=27.45 Aligned_cols=42 Identities=21% Similarity=0.320 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHhc-CceEEEeCCCCCHHHHHHHHHcCCCeEecC
Q 022946 159 NQILEYVKDIRDM-GMEVCCTLGMLEKHQAIELKKAGLTAYNHN 201 (289)
Q Consensus 159 ~~l~e~i~~ik~~-~~~i~~~~g~l~~e~l~~L~~aG~~~v~i~ 201 (289)
+.+.+.++.+++. .+.+.+-.|.-+.+.++.+.++ .|.+-+|
T Consensus 173 ~~~~~~i~~lr~~~~~pI~vggGI~~~e~~~~~~~~-ADgvVvG 215 (242)
T cd04724 173 DDLKELIKRIRKYTDLPIAVGFGISTPEQAAEVAKY-ADGVIVG 215 (242)
T ss_pred hhHHHHHHHHHhcCCCcEEEEccCCCHHHHHHHHcc-CCEEEEC
Confidence 4455555555543 4555555565566666667766 6666665
No 453
>PRK15447 putative protease; Provisional
Probab=70.20 E-value=11 Score=33.19 Aligned_cols=50 Identities=10% Similarity=0.028 Sum_probs=39.6
Q ss_pred HHHHHHHHHcCCCeEecCCCch-HHHHhccCCCCCHHHHHHHHHHHHHcCCceeecE
Q 022946 184 KHQAIELKKAGLTAYNHNLDTS-REFYSKIITTRSYDERLETLKHVREAGINVCSGG 239 (289)
Q Consensus 184 ~e~l~~L~~aG~~~v~i~let~-~~~~~~i~~~~~~~~~~~~i~~~~~~Gi~v~~~~ 239 (289)
+..+.++.+.|+|.|++|.+.. .+. .-+.+++.+.++.++++|.++...+
T Consensus 18 ~~~~~~~~~~gaDaVY~g~~~~~~R~------~f~~~~l~e~v~~~~~~gkkvyva~ 68 (301)
T PRK15447 18 RDFYQRAADSPVDIVYLGETVCSKRR------ELKVGDWLELAERLAAAGKEVVLST 68 (301)
T ss_pred HHHHHHHHcCCCCEEEECCccCCCcc------CCCHHHHHHHHHHHHHcCCEEEEEe
Confidence 5567888888999999997665 332 4688999999999999998875533
No 454
>PLN02361 alpha-amylase
Probab=70.14 E-value=13 Score=34.11 Aligned_cols=86 Identities=9% Similarity=0.103 Sum_probs=50.6
Q ss_pred cEEEEecc-cCCCCCCchhHHHHHHHHHHHHhcCce-EEEeCCCCCHHHHHHHHHcCCCeEecCCCch-HHHHhccCCC-
Q 022946 140 TRFCMGAA-WRDTIGRKTNFNQILEYVKDIRDMGME-VCCTLGMLEKHQAIELKKAGLTAYNHNLDTS-REFYSKIITT- 215 (289)
Q Consensus 140 ~~i~i~~~-~~~~~ge~~~~~~l~e~i~~ik~~~~~-i~~~~g~l~~e~l~~L~~aG~~~v~i~let~-~~~~~~i~~~- 215 (289)
..+.+++. +..+ ....+..+.+-+..+++.|+. +..++-.-. .+-... +.-+-.+.+.
T Consensus 11 ~~v~lQ~F~W~~~--~~~~w~~i~~kl~~l~~lG~t~iwl~P~~~~----------------~~~~GY~~~d~y~~~~~~ 72 (401)
T PLN02361 11 REILLQAFNWESH--KHDWWRNLEGKVPDLAKSGFTSAWLPPPSQS----------------LAPEGYLPQNLYSLNSAY 72 (401)
T ss_pred CcEEEEEEeccCC--ccHHHHHHHHHHHHHHHcCCCEEEeCCCCcC----------------CCCCCCCcccccccCccc
Confidence 45666653 2111 123566777777777777765 333332110 000122 2223333332
Q ss_pred CCHHHHHHHHHHHHHcCCceeecEEeec
Q 022946 216 RSYDERLETLKHVREAGINVCSGGIIGL 243 (289)
Q Consensus 216 ~~~~~~~~~i~~~~~~Gi~v~~~~i~Gl 243 (289)
.+-++..+.|+.+++.||+|..++++.+
T Consensus 73 Gt~~el~~li~~~h~~gi~vi~D~V~NH 100 (401)
T PLN02361 73 GSEHLLKSLLRKMKQYNVRAMADIVINH 100 (401)
T ss_pred CCHHHHHHHHHHHHHcCCEEEEEEcccc
Confidence 4788999999999999999999999977
No 455
>TIGR01464 hemE uroporphyrinogen decarboxylase. This model represents uroporphyrinogen decarboxylase (HemE), which converts uroporphyrinogen III to coproporphyrinogen III. This step takes the pathway toward protoporphyrin IX, a common precursor of both heme and chlorophyll, rather than toward precorrin 2 and its products.
Probab=70.13 E-value=80 Score=28.09 Aligned_cols=69 Identities=13% Similarity=0.228 Sum_probs=38.2
Q ss_pred HHHHHcCCcEEEEecccCCCCCCchhH-----HHHHHHHHHHHhc--CceEEEeCCCCCHHHHHHHHHcCCCeEecCC
Q 022946 132 QKAKEAGSTRFCMGAAWRDTIGRKTNF-----NQILEYVKDIRDM--GMEVCCTLGMLEKHQAIELKKAGLTAYNHNL 202 (289)
Q Consensus 132 ~~~~~~g~~~i~i~~~~~~~~ge~~~~-----~~l~e~i~~ik~~--~~~i~~~~g~l~~e~l~~L~~aG~~~v~i~l 202 (289)
+...+.|++-+.+...+..... |..+ +.+.++++.+++. +..+.-..|- ....++.|++.|++.+++.-
T Consensus 187 ~~~~eaGad~i~i~d~~~~~ls-p~~f~ef~~p~~k~i~~~i~~~~~~~~ilh~cg~-~~~~~~~~~~~~~~~~s~d~ 262 (338)
T TIGR01464 187 VEQVKAGAQAVQIFDSWAGALS-PEDFEEFVLPYLKKIIEEVKARLPNVPVILFAKG-AGHLLEELAETGADVVGLDW 262 (338)
T ss_pred HHHHHcCCCEEEEECCccccCC-HHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEeCC-cHHHHHHHHhcCCCEEEeCC
Confidence 3344568887765432222222 3232 4445566667654 3333322332 24678999999999886643
No 456
>PRK03620 5-dehydro-4-deoxyglucarate dehydratase; Provisional
Probab=70.09 E-value=60 Score=28.51 Aligned_cols=75 Identities=11% Similarity=0.035 Sum_probs=44.2
Q ss_pred CCHHHHHHHHHHHHHcCCcEEEEecccCCCCCCc--hhHHHHHHHHHHHH---hcCceEEEeCCCCCHHHH---HHHHHc
Q 022946 122 MTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRK--TNFNQILEYVKDIR---DMGMEVCCTLGMLEKHQA---IELKKA 193 (289)
Q Consensus 122 ~~~eei~~~~~~~~~~g~~~i~i~~~~~~~~ge~--~~~~~l~e~i~~ik---~~~~~i~~~~g~l~~e~l---~~L~~a 193 (289)
++.+.+.+.++.+.+.|++-+++.|. .||- ...++-.++++.+. .-.+.+....|.-+.+.+ +..+++
T Consensus 25 iD~~~l~~li~~l~~~Gv~Gi~~~Gs----tGE~~~Lt~eEr~~~~~~~~~~~~~~~pvi~gv~~~t~~~i~~~~~a~~~ 100 (303)
T PRK03620 25 FDEAAYREHLEWLAPYGAAALFAAGG----TGEFFSLTPDEYSQVVRAAVETTAGRVPVIAGAGGGTAQAIEYAQAAERA 100 (303)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEECcC----CcCcccCCHHHHHHHHHHHHHHhCCCCcEEEecCCCHHHHHHHHHHHHHh
Confidence 78889999999998999999877552 1332 23344444444433 223444444343334443 455556
Q ss_pred CCCeEec
Q 022946 194 GLTAYNH 200 (289)
Q Consensus 194 G~~~v~i 200 (289)
|++.+.+
T Consensus 101 Gadav~~ 107 (303)
T PRK03620 101 GADGILL 107 (303)
T ss_pred CCCEEEE
Confidence 8888765
No 457
>PRK03906 mannonate dehydratase; Provisional
Probab=70.08 E-value=11 Score=34.36 Aligned_cols=59 Identities=24% Similarity=0.277 Sum_probs=35.3
Q ss_pred CCHHHHHHHHH----cCCCeEecCCCchHHHHhccCCC-----CCHHHHHHHHHHHHHcCCc-eeecEEeec
Q 022946 182 LEKHQAIELKK----AGLTAYNHNLDTSREFYSKIITT-----RSYDERLETLKHVREAGIN-VCSGGIIGL 243 (289)
Q Consensus 182 l~~e~l~~L~~----aG~~~v~i~let~~~~~~~i~~~-----~~~~~~~~~i~~~~~~Gi~-v~~~~i~Gl 243 (289)
-+.+.+.++++ +|++.-. +||.+ +.+.|..+ .-.+.+++.|+.+-+.||+ ++.++|.-+
T Consensus 40 W~~~~i~~~~~~ie~~Gl~~~v--vEs~p-v~~~Ik~g~~~rd~~ie~y~~sirnlg~~GI~~icYnfmpv~ 108 (385)
T PRK03906 40 WPVEEILARKAEIEAAGLEWSV--VESVP-VHEDIKTGTPNRDRYIENYKQTLRNLAAAGIKVVCYNFMPVF 108 (385)
T ss_pred CCHHHHHHHHHHHHHcCCeEEE--EeCCC-ccHHHHcCCCCHHHHHHHHHHHHHHHHhcCCcEEEecCcccc
Confidence 45566655554 5774322 45542 22334322 2367888899999999998 566776644
No 458
>cd01572 QPRTase Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=70.08 E-value=28 Score=30.06 Aligned_cols=59 Identities=14% Similarity=0.152 Sum_probs=36.7
Q ss_pred HHHHcCCcEEEEecccCCCCCCchhHHHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHcCCCeEecCC
Q 022946 133 KAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMGMEVCCTLGMLEKHQAIELKKAGLTAYNHNL 202 (289)
Q Consensus 133 ~~~~~g~~~i~i~~~~~~~~ge~~~~~~l~e~i~~ik~~~~~i~~~~g~l~~e~l~~L~~aG~~~v~i~l 202 (289)
++.+.|++.+-+. +...+.+.++++.++. .+.+....| ++.+.+.++.++|+|.+.++-
T Consensus 197 ~A~~~gaDyI~ld---------~~~~e~l~~~~~~~~~-~ipi~AiGG-I~~~ni~~~a~~Gvd~Iav~s 255 (268)
T cd01572 197 EALEAGADIIMLD---------NMSPEELREAVALLKG-RVLLEASGG-ITLENIRAYAETGVDYISVGA 255 (268)
T ss_pred HHHHcCCCEEEEC---------CcCHHHHHHHHHHcCC-CCcEEEECC-CCHHHHHHHHHcCCCEEEEEe
Confidence 3345677666442 1233455555544432 455555555 789999999999999998754
No 459
>PRK08508 biotin synthase; Provisional
Probab=69.98 E-value=41 Score=29.15 Aligned_cols=100 Identities=19% Similarity=0.208 Sum_probs=58.7
Q ss_pred HHHHHHcCCcEEEEe--cccCC--CCCCchhHHHHHHHHHHHHhcCceEEEe----CCCCCH---HHHHHHHHcCCCeEe
Q 022946 131 AQKAKEAGSTRFCMG--AAWRD--TIGRKTNFNQILEYVKDIRDMGMEVCCT----LGMLEK---HQAIELKKAGLTAYN 199 (289)
Q Consensus 131 ~~~~~~~g~~~i~i~--~~~~~--~~ge~~~~~~l~e~i~~ik~~~~~i~~~----~g~l~~---e~l~~L~~aG~~~v~ 199 (289)
++.+++.|++.+... ++... .......+++.++.++.+++.|+++++. .|.-.+ +.+..|++.+.+.|.
T Consensus 105 l~~Lk~aGld~~~~~lEt~~~~~~~i~~~~~~~~~l~~i~~a~~~Gi~v~sg~I~GlGEt~ed~~~~l~~lr~L~~~svp 184 (279)
T PRK08508 105 LKELKKAGIFSYNHNLETSKEFFPKICTTHTWEERFQTCENAKEAGLGLCSGGIFGLGESWEDRISFLKSLASLSPHSTP 184 (279)
T ss_pred HHHHHHcCCCEEcccccchHHHhcCCCCCCCHHHHHHHHHHHHHcCCeecceeEEecCCCHHHHHHHHHHHHcCCCCEEe
Confidence 345567788777541 11100 0010135677888888888888876543 232223 345677788988888
Q ss_pred cCCCch-HHHHhccCCCCCHHHHHHHHHHHHHc
Q 022946 200 HNLDTS-REFYSKIITTRSYDERLETLKHVREA 231 (289)
Q Consensus 200 i~let~-~~~~~~i~~~~~~~~~~~~i~~~~~~ 231 (289)
+++-.. +.+--. .+..+.++.++.+..+|-.
T Consensus 185 l~~~~p~~~t~~~-~~~~~~~~~lr~iAv~Rl~ 216 (279)
T PRK08508 185 INFFIPNPALPLK-APTLSADEALEIVRLAKEA 216 (279)
T ss_pred eCCcCCCCCCCCC-CCCCCHHHHHHHHHHHHHH
Confidence 877555 433211 2345778888888777664
No 460
>PF01026 TatD_DNase: TatD related DNase The Pfam entry finds members not in the Prosite definition.; InterPro: IPR001130 This family of proteins are related to a large superfamily of metalloenzymes []. TatD, a member of this family has been shown experimentally to be a DNase enzyme []. Allantoinase 3.5.2.5 from EC, N-isopropylammelide isopropyl amidohydrolase 3.5.1 from EC and the SCN1 protein from fission yeast belong to this family.; GO: 0016888 endodeoxyribonuclease activity, producing 5'-phosphomonoesters; PDB: 3E2V_B 1XWY_A 3GUW_D 3RCM_A 1ZZM_A 2XIO_A 1J6O_A 2GZX_A 3IPW_A 2Y1H_A ....
Probab=69.86 E-value=3.3 Score=35.40 Aligned_cols=46 Identities=13% Similarity=-0.001 Sum_probs=37.1
Q ss_pred CCcccc-ccccccccccchHHHHHHHHHhcCCCCCCCHHHHHHhhCCChH
Q 022946 19 SKKFLA-LHSSCSCYSASAAAIEAERTIREGPRHDWSKDDIKSIYDSPVL 67 (289)
Q Consensus 19 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~ee~~~l~~~~~~ 67 (289)
-+||++ .|.++..|.|..+..+++.+++ -.+++.+|+...+..+..
T Consensus 205 D~P~~~~~~~~~~~~~p~~i~~~~~~la~---~~~~~~e~~~~~~~~N~~ 251 (255)
T PF01026_consen 205 DAPYLAPDPYRGKPNEPSNIPKVAQALAE---IKGISLEELAQIIYENAK 251 (255)
T ss_dssp BTTSSECTTSTTSE--GGGHHHHHHHHHH---HHTSTHHHHHHHHHHHHH
T ss_pred CCCcCCccccCCCCCChHHHHHHHHHHHH---HcCCCHHHHHHHHHHHHH
Confidence 489999 6899999999999999999998 788999999877654433
No 461
>TIGR01235 pyruv_carbox pyruvate carboxylase. This enzyme plays a role in gluconeogensis but not glycolysis.
Probab=69.46 E-value=80 Score=33.40 Aligned_cols=78 Identities=13% Similarity=0.117 Sum_probs=43.7
Q ss_pred CCHHHHHHHHHHHHHcCCcEEEEecccCCCCCCchhHHHHHHHHHHHH-hcCce--EEEe--CCCCCHHHHHHHHHcCCC
Q 022946 122 MTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIR-DMGME--VCCT--LGMLEKHQAIELKKAGLT 196 (289)
Q Consensus 122 ~~~eei~~~~~~~~~~g~~~i~i~~~~~~~~ge~~~~~~l~e~i~~ik-~~~~~--i~~~--~g~l~~e~l~~L~~aG~~ 196 (289)
.+.+-+++.++.+.+.|++.++|-. +.|- ..-..+.++++.+| ..++. ++++ .|.-....+. -.++|++
T Consensus 686 ~~l~y~~~~ak~l~~~Gad~I~ikD----t~Gl-l~P~~~~~Lv~~lk~~~~~pi~~H~Hdt~Gla~an~la-A~eaGad 759 (1143)
T TIGR01235 686 YDLKYYTNLAVELEKAGAHILGIKD----MAGL-LKPAAAKLLIKALREKTDLPIHFHTHDTSGIAVASMLA-AVEAGVD 759 (1143)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEECC----CcCC-cCHHHHHHHHHHHHHhcCCeEEEEECCCCCcHHHHHHH-HHHhCCC
Confidence 4677777888888888888887743 1221 12244555555555 22333 3333 3433333333 3467888
Q ss_pred eEecCCCch
Q 022946 197 AYNHNLDTS 205 (289)
Q Consensus 197 ~v~i~let~ 205 (289)
.|..++.+.
T Consensus 760 ~vD~ai~gl 768 (1143)
T TIGR01235 760 VVDVAVDSM 768 (1143)
T ss_pred EEEecchhh
Confidence 888777553
No 462
>PLN02334 ribulose-phosphate 3-epimerase
Probab=69.41 E-value=66 Score=26.87 Aligned_cols=79 Identities=11% Similarity=0.170 Sum_probs=42.1
Q ss_pred CHHHHHHHHHHHHHcCCcEEEEecccCCCCCCchhHHHHHHHHHHHHhcCceEEEeCCC-CCHHHHHHHHHcCCCeEecC
Q 022946 123 TKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMGMEVCCTLGM-LEKHQAIELKKAGLTAYNHN 201 (289)
Q Consensus 123 ~~eei~~~~~~~~~~g~~~i~i~~~~~~~~ge~~~~~~l~e~i~~ik~~~~~i~~~~g~-l~~e~l~~L~~aG~~~v~i~ 201 (289)
+...+.+.++.+.+.|++.+.+---+..+......-..+++.++.+....+.+ ..-. -..+.++.+.++|.+.|.+.
T Consensus 18 ~~~~l~~~l~~~~~~g~~~ihld~~d~~f~~~~~~g~~~~~~l~~~~~~~~~v--hlmv~~p~d~~~~~~~~gad~v~vH 95 (229)
T PLN02334 18 DFANLAEEAKRVLDAGADWLHVDVMDGHFVPNLTIGPPVVKALRKHTDAPLDC--HLMVTNPEDYVPDFAKAGASIFTFH 95 (229)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEecccCCcCCccccCHHHHHHHHhcCCCcEEE--EeccCCHHHHHHHHHHcCCCEEEEe
Confidence 34567788888889999999883211111110001013333333332112222 2111 12567888999999999766
Q ss_pred CC
Q 022946 202 LD 203 (289)
Q Consensus 202 le 203 (289)
++
T Consensus 96 ~~ 97 (229)
T PLN02334 96 IE 97 (229)
T ss_pred ec
Confidence 64
No 463
>KOG1643 consensus Triosephosphate isomerase [Carbohydrate transport and metabolism]
Probab=69.22 E-value=64 Score=26.63 Aligned_cols=64 Identities=22% Similarity=0.191 Sum_probs=44.3
Q ss_pred eCCCCCHHH-HHHHHHcCCCeEecCCCchHHHHhccCCCCCHHHHHHHHHHHHHcCCceeecEEeecCCCHHHH
Q 022946 178 TLGMLEKHQ-AIELKKAGLTAYNHNLDTSREFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGLGEAEEDR 250 (289)
Q Consensus 178 ~~g~l~~e~-l~~L~~aG~~~v~i~let~~~~~~~i~~~~~~~~~~~~i~~~~~~Gi~v~~~~i~Glget~ed~ 250 (289)
..|.++-|. .+.|++.|+.++.+|- ..++.+- +.+-+-+-+-.+.+...|+.| |.=+||+.+++
T Consensus 69 k~GafTGEiS~~mlkd~G~~wVIlGH----SERR~~f-gEsd~~i~~K~~~Al~eGl~V----iaCIGE~leeR 133 (247)
T KOG1643|consen 69 KSGAFTGEISAEMLKDLGAEWVILGH----SERRHVF-GESDEFIADKTAHALAEGLKV----IACIGETLEER 133 (247)
T ss_pred cCccccCccCHHHHHhCCCCEEEecc----hhhhhhh-CCchHHHHHHHHHHHHcCCeE----EEEecccHHhh
Confidence 356666664 6889999999998876 1222221 345677788888999999986 44457887766
No 464
>PRK15452 putative protease; Provisional
Probab=69.19 E-value=44 Score=31.22 Aligned_cols=74 Identities=11% Similarity=0.072 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHHHcCCcEEEEecccCCCCCCchhHHHHHHHHHHHHhcCceEE--EeCCCCCHHHHHHHHHcCCCeEecC
Q 022946 124 KDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMGMEVC--CTLGMLEKHQAIELKKAGLTAYNHN 201 (289)
Q Consensus 124 ~eei~~~~~~~~~~g~~~i~i~~~~~~~~ge~~~~~~l~e~i~~ik~~~~~i~--~~~g~l~~e~l~~L~~aG~~~v~i~ 201 (289)
.+.+.+.++.+.+.|++.|.+.. ..++.+++... -+++++ +.....+...++.+++.|++++.++
T Consensus 75 l~~~~~~l~~l~~~gvDgvIV~d------------~G~l~~~ke~~-p~l~ih~stqlni~N~~a~~f~~~lG~~rvvLS 141 (443)
T PRK15452 75 LKTFIRDLEPVIAMKPDALIMSD------------PGLIMMVREHF-PEMPIHLSVQANAVNWATVKFWQQMGLTRVILS 141 (443)
T ss_pred HHHHHHHHHHHHhCCCCEEEEcC------------HHHHHHHHHhC-CCCeEEEEecccCCCHHHHHHHHHCCCcEEEEC
Confidence 34555555666666777665532 12333333321 133443 3345678888999999999999988
Q ss_pred CCch-HHHHh
Q 022946 202 LDTS-REFYS 210 (289)
Q Consensus 202 let~-~~~~~ 210 (289)
.|-. +++..
T Consensus 142 rELsl~EI~~ 151 (443)
T PRK15452 142 RELSLEEIEE 151 (443)
T ss_pred CcCCHHHHHH
Confidence 8776 55443
No 465
>PF00113 Enolase_C: Enolase, C-terminal TIM barrel domain; InterPro: IPR020810 Enolase (2-phospho-D-glycerate hydrolase) is an essential glycolytic enzyme that catalyses the interconversion of 2-phosphoglycerate and phosphoenolpyruvate [, ]. In vertebrates, there are 3 different, tissue-specific isoenzymes, designated alpha, beta and gamma. Alpha is present in most tissues, beta is localised in muscle tissue, and gamma is found only in nervous tissue. The functional enzyme exists as a dimer of any 2 isoforms. In immature organs and in adult liver, it is usually an alpha homodimer, in adult skeletal muscle, a beta homodimer, and in adult neurons, a gamma homodimer. In developing muscle, it is usually an alpha/beta heterodimer, and in the developing nervous system, an alpha/gamma heterodimer []. The tissue specific forms display minor kinetic differences. Tau-crystallin, one of the major lens proteins in some fish, reptiles and birds, has been shown [] to be evolutionary related to enolase. Neuron-specific enolase is released in a variety of neurological diseases, such as multiple sclerosis and after seizures or acute stroke. Several tumour cells have also been found positive for neuron-specific enolase. Beta-enolase deficiency is associated with glycogenosis type XIII defect.; GO: 0000287 magnesium ion binding, 0004634 phosphopyruvate hydratase activity, 0006096 glycolysis, 0000015 phosphopyruvate hydratase complex; PDB: 2FYM_D 3H8A_C 1E9I_D 3TQP_B 2PU1_A 1OEP_A 2PA6_A 1PDY_A 1PDZ_A 3UJ2_E ....
Probab=69.16 E-value=55 Score=28.75 Aligned_cols=116 Identities=15% Similarity=0.183 Sum_probs=64.3
Q ss_pred CCCCHHHHHHHHHHHHH-cCCcEEEEecccCCCCCCchhHHHHHHHHHHHHhcCceEEEe-CCCCCHHHHHHHHHcC-CC
Q 022946 120 KLMTKDAVMQAAQKAKE-AGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMGMEVCCT-LGMLEKHQAIELKKAG-LT 196 (289)
Q Consensus 120 ~~~~~eei~~~~~~~~~-~g~~~i~i~~~~~~~~ge~~~~~~l~e~i~~ik~~~~~i~~~-~g~l~~e~l~~L~~aG-~~ 196 (289)
..++.+|+++....+.+ +. -+.|- ++.. ...++...++.+++... +.+.-. .-.-+.+.++.-.+.+ ++
T Consensus 131 ~~~s~delid~y~~li~~YP--IvsIE----Dpf~-edD~e~w~~lt~~~g~~-~~iVGDDl~vTn~~ri~~~i~~~~~n 202 (295)
T PF00113_consen 131 RYKSSDELIDYYKDLIKKYP--IVSIE----DPFD-EDDWEGWAKLTKRLGDK-IQIVGDDLFVTNPKRIKKGIEKKACN 202 (295)
T ss_dssp GEEEHHHHHHHHHHHHHHS---EEEEE----SSS--TT-HHHHHHHHHHHTTT-SEEEESTTTTT-HHHHHHHHHCT--S
T ss_pred cccCHHHHHHHHHHHHHhcC--eEEEE----cccc-ccchHHHHHHHHhhhcc-eeeecccccccchhhhhccchhhhcc
Confidence 34789999988876654 54 23333 3333 23566667776666421 443322 2234566666554544 45
Q ss_pred eEecCCCchHHHHhccCCCCCHHHHHHHHHHHHHcCCceeecEEeec--CCCHHHHHHHHHHH
Q 022946 197 AYNHNLDTSREFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGL--GEAEEDRVGLLHTL 257 (289)
Q Consensus 197 ~v~i~let~~~~~~~i~~~~~~~~~~~~i~~~~~~Gi~v~~~~i~Gl--get~ed~~~~l~~l 257 (289)
.+.+-+. .-.+..+.+++++.+++.|+.+ |+.. |||.++++.++.--
T Consensus 203 a~llK~N----------QigTvte~lea~~~a~~~g~~~----vvS~rsgEteD~~iadLaVg 251 (295)
T PF00113_consen 203 ALLLKPN----------QIGTVTETLEAVKLAKSAGWGV----VVSHRSGETEDTFIADLAVG 251 (295)
T ss_dssp EEEE-HH----------HHSSHHHHHHHHHHHHHTT-EE----EEE--SS--S--HHHHHHHH
T ss_pred chhhhhh----------hhHHHHHHHHHHHHHHHCCcee----eccCCCCCcCchhHHHHHhc
Confidence 5554331 1268899999999999999876 6767 99988877766543
No 466
>TIGR00742 yjbN tRNA dihydrouridine synthase A. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=69.06 E-value=37 Score=30.17 Aligned_cols=84 Identities=17% Similarity=0.135 Sum_probs=52.4
Q ss_pred HHHHHHcCCCeEecCCCch-HHHHhccCC---CCCHHHHHHHHHHHHH-cCCceeecEEeecC--CCHHHHHHHHHHHhc
Q 022946 187 AIELKKAGLTAYNHNLDTS-REFYSKIIT---TRSYDERLETLKHVRE-AGINVCSGGIIGLG--EAEEDRVGLLHTLAT 259 (289)
Q Consensus 187 l~~L~~aG~~~v~i~let~-~~~~~~i~~---~~~~~~~~~~i~~~~~-~Gi~v~~~~i~Glg--et~ed~~~~l~~l~~ 259 (289)
++.+.++|+|.|.+++-.. +.+.+.-.+ -..++...+.++.+++ .+++|+.-+-+|.. ++.++..+.++.+.+
T Consensus 73 A~~~~~~g~d~IDlN~GCP~~~v~~~g~Gs~Ll~~p~~~~~iv~av~~~~~~PVsvKiR~g~~~~~~~~~~~~~~~~l~~ 152 (318)
T TIGR00742 73 AKIAEKRGYDEINLNVGCPSDRVQNGNFGACLMGNADLVADCVKAMQEAVNIPVTVKHRIGIDPLDSYEFLCDFVEIVSG 152 (318)
T ss_pred HHHHHhCCCCEEEEECCCCHHHhCCCCeehHhhcCHHHHHHHHHHHHHHhCCCeEEEEecCCCCcchHHHHHHHHHHHHH
Confidence 3445556888888887665 544332111 1356777777777776 47788877777873 344666677777776
Q ss_pred CCCCCCeeeeccc
Q 022946 260 LPTHPESVPINAL 272 (289)
Q Consensus 260 l~~~~~~v~i~~~ 272 (289)
. +.+.+.++.-
T Consensus 153 ~--G~~~itvHgR 163 (318)
T TIGR00742 153 K--GCQNFIVHAR 163 (318)
T ss_pred c--CCCEEEEeCC
Confidence 6 4666655543
No 467
>PRK06559 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=68.98 E-value=44 Score=29.27 Aligned_cols=61 Identities=15% Similarity=0.231 Sum_probs=38.4
Q ss_pred HHHHcCCcEEEEecccCCCCCCchhHHHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHcCCCeEecCCCc
Q 022946 133 KAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMGMEVCCTLGMLEKHQAIELKKAGLTAYNHNLDT 204 (289)
Q Consensus 133 ~~~~~g~~~i~i~~~~~~~~ge~~~~~~l~e~i~~ik~~~~~i~~~~g~l~~e~l~~L~~aG~~~v~i~let 204 (289)
++.+.|++.|-+ . + ...+.+.++++.+++ .+.+..+ |-++.+.+.++.+.|+|.|+.|-=+
T Consensus 212 ~a~~agaDiImL-D---n-----mspe~l~~av~~~~~-~~~leaS-GGI~~~ni~~yA~tGVD~Is~galt 272 (290)
T PRK06559 212 EAAAAGADIIML-D---N-----MSLEQIEQAITLIAG-RSRIECS-GNIDMTTISRFRGLAIDYVSSGSLT 272 (290)
T ss_pred HHHHcCCCEEEE-C---C-----CCHHHHHHHHHHhcC-ceEEEEE-CCCCHHHHHHHHhcCCCEEEeCccc
Confidence 344567765543 1 1 133556666655543 3344444 4488999999999999999987533
No 468
>PRK12999 pyruvate carboxylase; Reviewed
Probab=68.96 E-value=97 Score=32.82 Aligned_cols=78 Identities=13% Similarity=0.153 Sum_probs=43.4
Q ss_pred CCHHHHHHHHHHHHHcCCcEEEEecccCCCCCCchhHHHHHHHHHHHH-hcCce--EEEe--CCCCCHHHHHHHHHcCCC
Q 022946 122 MTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIR-DMGME--VCCT--LGMLEKHQAIELKKAGLT 196 (289)
Q Consensus 122 ~~~eei~~~~~~~~~~g~~~i~i~~~~~~~~ge~~~~~~l~e~i~~ik-~~~~~--i~~~--~g~l~~e~l~~L~~aG~~ 196 (289)
.+++-+++.++.+.+.|++.|+|.. +.|- ..-..+.++++.+| ..++. ++++ .|.-....+ .-.++|++
T Consensus 688 ~~~~~~~~~a~~l~~~Ga~~i~ikD----t~G~-l~P~~~~~lv~~lk~~~~ipi~~H~Hnt~Gla~an~l-aA~~aGad 761 (1146)
T PRK12999 688 YDLDYYVDLAKELEKAGAHILAIKD----MAGL-LKPAAAYELVSALKEEVDLPIHLHTHDTSGNGLATYL-AAAEAGVD 761 (1146)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEECC----ccCC-CCHHHHHHHHHHHHHHcCCeEEEEeCCCCchHHHHHH-HHHHhCCC
Confidence 4677777777777778888877743 1121 12244555555555 22333 3333 343333333 33467888
Q ss_pred eEecCCCch
Q 022946 197 AYNHNLDTS 205 (289)
Q Consensus 197 ~v~i~let~ 205 (289)
.|..++.+.
T Consensus 762 ~vD~av~gl 770 (1146)
T PRK12999 762 IVDVAVASM 770 (1146)
T ss_pred EEEecchhh
Confidence 888777664
No 469
>PLN00196 alpha-amylase; Provisional
Probab=68.87 E-value=12 Score=34.73 Aligned_cols=28 Identities=11% Similarity=0.132 Sum_probs=26.2
Q ss_pred CCHHHHHHHHHHHHHcCCceeecEEeec
Q 022946 216 RSYDERLETLKHVREAGINVCSGGIIGL 243 (289)
Q Consensus 216 ~~~~~~~~~i~~~~~~Gi~v~~~~i~Gl 243 (289)
.+-++..+.++.+++.||+|-.++++.+
T Consensus 89 Gt~~elk~Lv~~aH~~GIkVilDvV~NH 116 (428)
T PLN00196 89 GNEAQLKSLIEAFHGKGVQVIADIVINH 116 (428)
T ss_pred CCHHHHHHHHHHHHHCCCEEEEEECccC
Confidence 5789999999999999999999999988
No 470
>KOG2544 consensus Dihydropteroate synthase/7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase/Dihydroneopterin aldolase [Coenzyme transport and metabolism]
Probab=68.84 E-value=87 Score=29.36 Aligned_cols=79 Identities=15% Similarity=0.245 Sum_probs=53.5
Q ss_pred CCCHHHHHHHHHHHHHcCCcEEEEecccCCCCCC----chhHHHHHHHHHHHHhc--CceEEEeCCCCCHHHHHHHHHcC
Q 022946 121 LMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGR----KTNFNQILEYVKDIRDM--GMEVCCTLGMLEKHQAIELKKAG 194 (289)
Q Consensus 121 ~~~~eei~~~~~~~~~~g~~~i~i~~~~~~~~ge----~~~~~~l~e~i~~ik~~--~~~i~~~~g~l~~e~l~~L~~aG 194 (289)
+-+.+..++.++.+...|..-+-++|...-|... ...+++++.+++.++++ ...+..+..+...+++.+-.++|
T Consensus 452 f~~ids~l~~v~smi~dga~IiDiGgqSTrP~a~~iS~eEEirR~iP~ikavR~~~e~~~v~iSiDTy~S~VAkeAI~~G 531 (711)
T KOG2544|consen 452 FQSIDSALSRVRSMISDGADIIDIGGQSTRPMASRISSEEEIRRLIPVIKAVRGMTEMPQVLISIDTYNSEVAKEAIKNG 531 (711)
T ss_pred cccHHHHHHHHHHHhcCCceEEeecCccCCCCccccchHHHHHHHhHHHHHHhcccccCceeEEEechhhHHHHHHHhcc
Confidence 3578999999988888888777776644333322 24668888888888843 34455555566677777777777
Q ss_pred CCeEe
Q 022946 195 LTAYN 199 (289)
Q Consensus 195 ~~~v~ 199 (289)
+|-++
T Consensus 532 adIiN 536 (711)
T KOG2544|consen 532 ADIIN 536 (711)
T ss_pred chhee
Confidence 76654
No 471
>PRK09722 allulose-6-phosphate 3-epimerase; Provisional
Probab=68.83 E-value=53 Score=27.68 Aligned_cols=72 Identities=10% Similarity=0.145 Sum_probs=44.1
Q ss_pred CHHHHHHHHHHHHHcCCcEEEEecccCCCCCCchhHHHHHHHHHHHHh----cCce--EEEeCCCCCHHHHHHHHHcCCC
Q 022946 123 TKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRD----MGME--VCCTLGMLEKHQAIELKKAGLT 196 (289)
Q Consensus 123 ~~eei~~~~~~~~~~g~~~i~i~~~~~~~~ge~~~~~~l~e~i~~ik~----~~~~--i~~~~g~l~~e~l~~L~~aG~~ 196 (289)
+.+.+...+.. ++.|.+.+....++| ..+.+..++-++.+++ .+.+ +.+..| ++.+.+..+.++|+|
T Consensus 120 ~~~~l~~~l~~-----vD~VLvMsV~PGf~G-Q~fi~~~l~KI~~lr~~~~~~~~~~~IeVDGG-I~~~~i~~~~~aGad 192 (229)
T PRK09722 120 PVESIKYYIHL-----LDKITVMTVDPGFAG-QPFIPEMLDKIAELKALRERNGLEYLIEVDGS-CNQKTYEKLMEAGAD 192 (229)
T ss_pred CHHHHHHHHHh-----cCEEEEEEEcCCCcc-hhccHHHHHHHHHHHHHHHhcCCCeEEEEECC-CCHHHHHHHHHcCCC
Confidence 45555444332 355655554433334 4466666666666552 3433 555555 789999999999999
Q ss_pred eEecC
Q 022946 197 AYNHN 201 (289)
Q Consensus 197 ~v~i~ 201 (289)
.+-.|
T Consensus 193 ~~V~G 197 (229)
T PRK09722 193 VFIVG 197 (229)
T ss_pred EEEEC
Confidence 88765
No 472
>PF00290 Trp_syntA: Tryptophan synthase alpha chain; InterPro: IPR002028 Tryptophan synthase (4.2.1.20 from EC) catalyzes the last step in the biosynthesis of tryptophan [, ]: L-serine + 1-(indol-3-yl)glycerol 3-phosphate = L-tryptophan + glyceraldehyde 3-phosphate + H2O It has two functional domains, each found in bacteria and plants on a separate subunit. In Escherichia coli, the 2 subunits, A and B, are encoded by the trpA and trpB genes respectively. The alpha chain is for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate and the beta chain IPR006653 from INTERPRO is for the synthesis of tryptophan from indole and serine. In fungi the two domains are fused together in a single multifunctional protein, in the order: (NH2-A-B-COOH) [, ]. The two domains of the Neurospora crassa polypeptide are linked by a connector of 54-amino acid residues that has less than 25% identity to the 45-residue connector of the Saccharomyces cerevisiae (Baker's yeast) polypeptide. Two acidic residues are believed to serve as proton donors/acceptors in the enzyme's catalytic mechanism.; GO: 0004834 tryptophan synthase activity, 0006568 tryptophan metabolic process; PDB: 1TJR_B 1RD5_B 1K8X_A 1QOQ_A 1KFE_A 1KFB_A 2CLO_A 1TTP_A 2RH9_A 1K7F_A ....
Probab=68.60 E-value=59 Score=27.96 Aligned_cols=45 Identities=22% Similarity=0.304 Sum_probs=35.4
Q ss_pred hHHHHHHHHHHHHhc-CceEEEeCCCCCHHHHHHHHHcCCCeEecCC
Q 022946 157 NFNQILEYVKDIRDM-GMEVCCTLGMLEKHQAIELKKAGLTAYNHNL 202 (289)
Q Consensus 157 ~~~~l~e~i~~ik~~-~~~i~~~~g~l~~e~l~~L~~aG~~~v~i~l 202 (289)
....+.+.++.+|+. +..+.+--|.-+.+.++.+. .|.|.+-+|=
T Consensus 182 ~~~~l~~~i~~ik~~~~~Pv~vGFGI~~~e~~~~~~-~~aDGvIVGS 227 (259)
T PF00290_consen 182 LPDELKEFIKRIKKHTDLPVAVGFGISTPEQAKKLA-AGADGVIVGS 227 (259)
T ss_dssp CHHHHHHHHHHHHHTTSS-EEEESSS-SHHHHHHHH-TTSSEEEESH
T ss_pred chHHHHHHHHHHHhhcCcceEEecCCCCHHHHHHHH-ccCCEEEECH
Confidence 446788888888854 67888888999999999999 8899998874
No 473
>COG1809 (2R)-phospho-3-sulfolactate synthase (PSL synthase, CoM biosynthesis) [Coenzyme transport and metabolism]
Probab=68.59 E-value=67 Score=26.89 Aligned_cols=106 Identities=19% Similarity=0.248 Sum_probs=62.2
Q ss_pred cCCCCHHHHHHHHHHHHHcCCcEEEEecccCCCCCCc-hhHHHHHHHHHHHHhcCce-EEEeCCCC--CHHH----HHHH
Q 022946 119 QKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRK-TNFNQILEYVKDIRDMGME-VCCTLGML--EKHQ----AIEL 190 (289)
Q Consensus 119 ~~~~~~eei~~~~~~~~~~g~~~i~i~~~~~~~~ge~-~~~~~l~e~i~~ik~~~~~-i~~~~g~l--~~e~----l~~L 190 (289)
....+.|.|.+.+..+++.++.- ..+| . .-+- ..-+.+-+.++.+++.|++ +.+++|.+ +.+. +++.
T Consensus 54 ~~Li~kd~V~ekid~y~e~~i~v-~pGG-t---lfe~a~~~~kvdeyl~e~~~lGfe~iEIS~G~i~m~~eek~~lIe~a 128 (258)
T COG1809 54 SSLIDKDQVKEKIDMYKENDIYV-FPGG-T---LFEIAYSQDKVDEYLNEAKELGFEAIEISNGTIPMSTEEKCRLIERA 128 (258)
T ss_pred cccccHHHHHHHHHHHHHcCcee-cCCc-e---EEEeehhcccHHHHHHHHHHcCccEEEecCCeeecchHHHHHHHHHH
Confidence 34467788888888888887642 2222 1 1111 1225566667777777887 56778753 3333 3445
Q ss_pred HHcCCCeEe-cCCCchHHHHhccCCCCCHHHHHHHHHHHHHcCCc
Q 022946 191 KKAGLTAYN-HNLDTSREFYSKIITTRSYDERLETLKHVREAGIN 234 (289)
Q Consensus 191 ~~aG~~~v~-i~let~~~~~~~i~~~~~~~~~~~~i~~~~~~Gi~ 234 (289)
.+.|+...+ +|.+-. +... ..+.+++++.|...-++|-.
T Consensus 129 ~d~Gf~vlsEvGkk~~-e~~~----~l~~~d~~k~i~~dvdaGa~ 168 (258)
T COG1809 129 VDEGFMVLSEVGKKDP-ESDS----ALSPDDRVKLINDDVDAGAE 168 (258)
T ss_pred HhcccEEehhhcccCc-chhh----hcChHHHHHHHHHHHHcchH
Confidence 556665443 344332 1111 23678899988888888754
No 474
>TIGR00078 nadC nicotinate-nucleotide pyrophosphorylase. Synonym: quinolinate phosphoribosyltransferase (decarboxylating)
Probab=68.54 E-value=36 Score=29.35 Aligned_cols=59 Identities=17% Similarity=0.219 Sum_probs=37.8
Q ss_pred HHHHcCCcEEEEecccCCCCCCchhHHHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHcCCCeEecCC
Q 022946 133 KAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMGMEVCCTLGMLEKHQAIELKKAGLTAYNHNL 202 (289)
Q Consensus 133 ~~~~~g~~~i~i~~~~~~~~ge~~~~~~l~e~i~~ik~~~~~i~~~~g~l~~e~l~~L~~aG~~~v~i~l 202 (289)
.+.+.|++.+-+. +...+.+.+.++.++. .+.+....| ++.+.+..+.++|+|.+.+|.
T Consensus 193 ~A~~~gaDyI~ld---------~~~~e~lk~~v~~~~~-~ipi~AsGG-I~~~ni~~~a~~Gvd~Isvga 251 (265)
T TIGR00078 193 EAAEAGADIIMLD---------NMKPEEIKEAVQLLKG-RVLLEASGG-ITLDNLEEYAETGVDVISSGA 251 (265)
T ss_pred HHHHcCCCEEEEC---------CCCHHHHHHHHHHhcC-CCcEEEECC-CCHHHHHHHHHcCCCEEEeCH
Confidence 4456777766442 1122455555554432 245555555 789999999999999999864
No 475
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=68.51 E-value=63 Score=30.56 Aligned_cols=115 Identities=18% Similarity=0.195 Sum_probs=66.6
Q ss_pred HHHHHHHHHcCCcEEEEecccCCCCCCchhHHHHHHHHHHHHhc--CceEEEeCCCCCHHHHHHHHHcCCCeEecCCCch
Q 022946 128 MQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDM--GMEVCCTLGMLEKHQAIELKKAGLTAYNHNLDTS 205 (289)
Q Consensus 128 ~~~~~~~~~~g~~~i~i~~~~~~~~ge~~~~~~l~e~i~~ik~~--~~~i~~~~g~l~~e~l~~L~~aG~~~v~i~let~ 205 (289)
.+.++.+.+.|++.+++... -| ....+++.++.++.. ++.+.. .+..+.+.+..|.++|++.|.+|.-..
T Consensus 230 ~e~a~~L~~agvdvivvD~a----~g---~~~~vl~~i~~i~~~~p~~~vi~-g~v~t~e~a~~l~~aGad~i~vg~g~g 301 (486)
T PRK05567 230 EERAEALVEAGVDVLVVDTA----HG---HSEGVLDRVREIKAKYPDVQIIA-GNVATAEAARALIEAGADAVKVGIGPG 301 (486)
T ss_pred HHHHHHHHHhCCCEEEEECC----CC---cchhHHHHHHHHHhhCCCCCEEE-eccCCHHHHHHHHHcCCCEEEECCCCC
Confidence 66777788889987765431 12 225677888888743 455544 345889999999999999998765211
Q ss_pred H-HHHhccCC-C-CCHHHHHHHHHHHHHcCCceeecEEe--ecCCCHHHHHHHHH
Q 022946 206 R-EFYSKIIT-T-RSYDERLETLKHVREAGINVCSGGII--GLGEAEEDRVGLLH 255 (289)
Q Consensus 206 ~-~~~~~i~~-~-~~~~~~~~~i~~~~~~Gi~v~~~~i~--Glget~ed~~~~l~ 255 (289)
. ..-+.+.. + ..++-+.++.+.+++.|+.+ |. | -.+..|+...+.
T Consensus 302 s~~~~r~~~~~g~p~~~~~~~~~~~~~~~~~~v----iadGG-i~~~~di~kAla 351 (486)
T PRK05567 302 SICTTRIVAGVGVPQITAIADAAEAAKKYGIPV----IADGG-IRYSGDIAKALA 351 (486)
T ss_pred ccccceeecCCCcCHHHHHHHHHHHhccCCCeE----EEcCC-CCCHHHHHHHHH
Confidence 1 11111111 1 13455555555555556543 33 2 235556655544
No 476
>PLN02334 ribulose-phosphate 3-epimerase
Probab=68.50 E-value=69 Score=26.75 Aligned_cols=61 Identities=10% Similarity=0.095 Sum_probs=39.7
Q ss_pred CcEEEEecccCCCCCCchhHHHHHHHHHHHHhc--CceEEEeCCCCCHHHHHHHHHcCCCeEecC
Q 022946 139 STRFCMGAAWRDTIGRKTNFNQILEYVKDIRDM--GMEVCCTLGMLEKHQAIELKKAGLTAYNHN 201 (289)
Q Consensus 139 ~~~i~i~~~~~~~~ge~~~~~~l~e~i~~ik~~--~~~i~~~~g~l~~e~l~~L~~aG~~~v~i~ 201 (289)
++.+.+.+......+ .......++.++.+++. +.++.+..| ++.+.+..+.++|++.+.++
T Consensus 140 ~Dyi~~~~v~pg~~~-~~~~~~~~~~i~~~~~~~~~~~I~a~GG-I~~e~i~~l~~aGad~vvvg 202 (229)
T PLN02334 140 VDMVLVMSVEPGFGG-QSFIPSMMDKVRALRKKYPELDIEVDGG-VGPSTIDKAAEAGANVIVAG 202 (229)
T ss_pred CCEEEEEEEecCCCc-cccCHHHHHHHHHHHHhCCCCcEEEeCC-CCHHHHHHHHHcCCCEEEEC
Confidence 777766443222223 22445666666766643 345555555 68999999999999999876
No 477
>TIGR01235 pyruv_carbox pyruvate carboxylase. This enzyme plays a role in gluconeogensis but not glycolysis.
Probab=68.42 E-value=1.6e+02 Score=31.20 Aligned_cols=119 Identities=18% Similarity=0.245 Sum_probs=70.8
Q ss_pred CcCCCCHHHHHHHHHHHHHcCCcEEEEecccCCCCCCchhHHHHHHHHHHHHhcCceE----EEeCCCC-------C---
Q 022946 118 GQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMGMEV----CCTLGML-------E--- 183 (289)
Q Consensus 118 ~~~~~~~eei~~~~~~~~~~g~~~i~i~~~~~~~~ge~~~~~~l~e~i~~ik~~~~~i----~~~~g~l-------~--- 183 (289)
.|...+.+-|..-++.+.+.|++.|.+..+ . .+.+.+...++.+++.|..+ +-+...+ +
T Consensus 618 gy~~ypd~vv~~f~~~~~~~GidifrifD~----l---N~~~n~~~~~~~~~~~g~~~~~~i~yt~~~~d~~~~~~~l~y 690 (1143)
T TIGR01235 618 GYTNYPDNVVKYFVKQAAQGGIDIFRVFDS----L---NWVENMRVGMDAVAEAGKVVEAAICYTGDILDPARPKYDLKY 690 (1143)
T ss_pred CccCCCHHHHHHHHHHHHHcCCCEEEECcc----C---cCHHHHHHHHHHHHHcCCEEEEEEEEeccCCCcCCCCCCHHH
Confidence 344445566666668888999998877542 2 36678888888888776553 2221111 1
Q ss_pred -HHHHHHHHHcCCCeEecC----CCchHH---HHhccC----------CCCCHHHHHHHHHHHHHcCCceeecEEeec
Q 022946 184 -KHQAIELKKAGLTAYNHN----LDTSRE---FYSKII----------TTRSYDERLETLKHVREAGINVCSGGIIGL 243 (289)
Q Consensus 184 -~e~l~~L~~aG~~~v~i~----let~~~---~~~~i~----------~~~~~~~~~~~i~~~~~~Gi~v~~~~i~Gl 243 (289)
.+.+++|.++|++.+.+. +=+..+ +.+.++ ...+..--+.+.-.+-++|..+--.-+-|+
T Consensus 691 ~~~~ak~l~~~Gad~I~ikDt~Gll~P~~~~~Lv~~lk~~~~~pi~~H~Hdt~Gla~an~laA~eaGad~vD~ai~gl 768 (1143)
T TIGR01235 691 YTNLAVELEKAGAHILGIKDMAGLLKPAAAKLLIKALREKTDLPIHFHTHDTSGIAVASMLAAVEAGVDVVDVAVDSM 768 (1143)
T ss_pred HHHHHHHHHHcCCCEEEECCCcCCcCHHHHHHHHHHHHHhcCCeEEEEECCCCCcHHHHHHHHHHhCCCEEEecchhh
Confidence 256888999999998863 333211 222221 112344555566666788987544445566
No 478
>PRK07896 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=68.40 E-value=47 Score=29.06 Aligned_cols=45 Identities=13% Similarity=-0.051 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHhc--CceEEEeCCCCCHHHHHHHHHcCCCeEecCCC
Q 022946 158 FNQILEYVKDIRDM--GMEVCCTLGMLEKHQAIELKKAGLTAYNHNLD 203 (289)
Q Consensus 158 ~~~l~e~i~~ik~~--~~~i~~~~g~l~~e~l~~L~~aG~~~v~i~le 203 (289)
.+.+.++++.++.. .+.+..+. -++.+.+.++.+.|+|.|++|-=
T Consensus 230 ~e~vk~av~~~~~~~~~v~ieaSG-GI~~~ni~~yA~tGvD~Is~gal 276 (289)
T PRK07896 230 VWQTQEAVQRRDARAPTVLLESSG-GLTLDTAAAYAETGVDYLAVGAL 276 (289)
T ss_pred HHHHHHHHHHHhccCCCEEEEEEC-CCCHHHHHHHHhcCCCEEEeChh
Confidence 35666666655533 33444444 48899999999999999998753
No 479
>cd07938 DRE_TIM_HMGL 3-hydroxy-3-methylglutaryl-CoA lyase, catalytic TIM barrel domain. 3-hydroxy-3-methylglutaryl-CoA lyase (HMGL) catalyzes the cleavage of HMG-CoA to acetyl-CoA and acetoacetate, one of the terminal steps in ketone body generation and leucine degradation, and is a key enzyme in the pathway that supplies metabolic fuel to extrahepatic tissues. Mutations in HMGL cause a human autosomal recessive disorder called primary metabolic aciduria that affects ketogenesis and leucine catabolism and can be fatal due to an inability to tolerate hypoglycemia. HMGL has a TIM barrel domain with a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. The cleavage of HMG-CoA requires the presence of a divalent cation like Mg2+ or Mn2+, and the reaction is thought to involve general acid/base catalysis. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropy
Probab=68.10 E-value=43 Score=29.03 Aligned_cols=77 Identities=14% Similarity=0.267 Sum_probs=45.6
Q ss_pred CHHHHHHHHHHHHHcCCcEEEEecccCCCCCCchhHHHHHHHHHHHHh-c---CceEEEe--CCCCCHHHHHHHHHcCCC
Q 022946 123 TKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRD-M---GMEVCCT--LGMLEKHQAIELKKAGLT 196 (289)
Q Consensus 123 ~~eei~~~~~~~~~~g~~~i~i~~~~~~~~ge~~~~~~l~e~i~~ik~-~---~~~i~~~--~g~l~~e~l~~L~~aG~~ 196 (289)
+++.+++.++.+.+.|++.|.+.. +.|- ..-..+.++++.+++ . .+.++.+ .|.-....+ .-.++|++
T Consensus 147 ~~~~~~~~~~~~~~~Ga~~i~l~D----T~G~-~~P~~v~~lv~~l~~~~~~~~i~~H~Hnd~GlA~AN~l-aA~~aGa~ 220 (274)
T cd07938 147 PPERVAEVAERLLDLGCDEISLGD----TIGV-ATPAQVRRLLEAVLERFPDEKLALHFHDTRGQALANIL-AALEAGVR 220 (274)
T ss_pred CHHHHHHHHHHHHHcCCCEEEECC----CCCc-cCHHHHHHHHHHHHHHCCCCeEEEEECCCCChHHHHHH-HHHHhCCC
Confidence 778888888888889999988853 1221 122345555555552 2 2334444 343333333 34467999
Q ss_pred eEecCCCch
Q 022946 197 AYNHNLDTS 205 (289)
Q Consensus 197 ~v~i~let~ 205 (289)
.+..++.+.
T Consensus 221 ~id~t~~Gl 229 (274)
T cd07938 221 RFDSSVGGL 229 (274)
T ss_pred EEEEecccc
Confidence 988777653
No 480
>PF00128 Alpha-amylase: Alpha amylase, catalytic domain; InterPro: IPR006047 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Enzymes containing this domain, such as alpha-amylase, belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. The maltogenic alpha-amylase is an enzyme which catalyses hydrolysis of (1-4)-alpha-D-glucosidic linkages in polysaccharides so as to remove successive alpha-maltose residues from the non-reducing ends of the chains in the conversion of starch to maltose. Other enzymes include neopullulanase, which hydrolyses pullulan to panose, and cyclomaltodextrinase, which hydrolyses cyclodextrins. This entry represents the catalytic domain found in several protein members of this family. It has a structure consisting of an 8 stranded alpha/beta barrel that contains the active site, interrupted by a ~70 amino acid calcium-binding domain protruding between beta strand 3 and alpha helix 3, and a carboxyl-terminal Greek key beta-barrel domain []. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; GO: 0003824 catalytic activity, 0043169 cation binding, 0005975 carbohydrate metabolic process; PDB: 3FAX_A 3FAW_A 2DH3_B 2DH2_A 1CIU_A 1A47_A 3BMW_A 3BMV_A 2FH8_A 2FH6_A ....
Probab=68.08 E-value=6.1 Score=34.14 Aligned_cols=69 Identities=13% Similarity=0.050 Sum_probs=45.2
Q ss_pred HHHHHHHHcCCCeEecCC--Cc------h-HHHHhccCCC-CCHHHHHHHHHHHHHcCCceeecEEeec-CCCHHHHHHH
Q 022946 185 HQAIELKKAGLTAYNHNL--DT------S-REFYSKIITT-RSYDERLETLKHVREAGINVCSGGIIGL-GEAEEDRVGL 253 (289)
Q Consensus 185 e~l~~L~~aG~~~v~i~l--et------~-~~~~~~i~~~-~~~~~~~~~i~~~~~~Gi~v~~~~i~Gl-get~ed~~~~ 253 (289)
+.++.|+++|++.|.++- ++ . ..-|..+.+. .+.++..+.++.+++.||+|..++++.+ +...+-+...
T Consensus 8 ~kLdyl~~lGv~~I~l~Pi~~~~~~~~gY~~~d~~~vd~~~Gt~~d~~~Lv~~~h~~gi~VilD~V~NH~~~~~~~~~~~ 87 (316)
T PF00128_consen 8 DKLDYLKDLGVNAIWLSPIFESPNGYHGYDPSDYYAVDPRFGTMEDFKELVDAAHKRGIKVILDVVPNHTSDDHPWFQDS 87 (316)
T ss_dssp HTHHHHHHHTESEEEESS-EESSSSTTTTSESEEEEESTTTBHHHHHHHHHHHHHHTTCEEEEEEETSEEETTSHHHHHH
T ss_pred HhhHHHHHcCCCceecccccccccccccccceeeeccccccchhhhhhhhhhccccccceEEEeeecccccccccccccc
Confidence 346677777777776542 11 1 1112233332 3689999999999999999999999998 5444433333
No 481
>PRK13209 L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=68.06 E-value=78 Score=27.15 Aligned_cols=128 Identities=17% Similarity=0.090 Sum_probs=58.2
Q ss_pred CCHHHHHHHHHHHHHcCCcEEEEecccCCCCCCch--hHHHHHHHHHHHHhcCceEEE---e------CCCCCH------
Q 022946 122 MTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKT--NFNQILEYVKDIRDMGMEVCC---T------LGMLEK------ 184 (289)
Q Consensus 122 ~~~eei~~~~~~~~~~g~~~i~i~~~~~~~~ge~~--~~~~l~e~i~~ik~~~~~i~~---~------~g~l~~------ 184 (289)
.+.++.++ .+.+.|++.|-+..........+. ....+.++-+.+++.|+++.. + .+..++
T Consensus 21 ~~~~e~~~---~~~~~G~~~iEl~~~~~~~~~~~~~~~~~~~~~l~~~l~~~gl~i~~~~~~~~~~~~~~~~~~~~r~~~ 97 (283)
T PRK13209 21 ECWLEKLA---IAKTAGFDFVEMSVDESDERLARLDWSREQRLALVNALVETGFRVNSMCLSAHRRFPLGSEDDAVRAQA 97 (283)
T ss_pred CCHHHHHH---HHHHcCCCeEEEecCccccchhccCCCHHHHHHHHHHHHHcCCceeEEecccccccCCCCCCHHHHHHH
Confidence 35555554 445789988877532211000000 112233333334466776521 1 111122
Q ss_pred -----HHHHHHHHcCCCeEecCCCc-----h-HHHHhccCCCCCHHHHHHHHHHHHHcCCceeecEEeec-CCCHHHHHH
Q 022946 185 -----HQAIELKKAGLTAYNHNLDT-----S-REFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGL-GEAEEDRVG 252 (289)
Q Consensus 185 -----e~l~~L~~aG~~~v~i~let-----~-~~~~~~i~~~~~~~~~~~~i~~~~~~Gi~v~~~~i~Gl-get~ed~~~ 252 (289)
..++..++.|+..|.+.--. . ++.++ ...+.+-+..+.+++.|+.+.....-+. ..+.++..+
T Consensus 98 ~~~~~~~i~~a~~lG~~~i~~~~~~~~~~~~~~~~~~-----~~~~~l~~l~~~A~~~GV~i~iE~~~~~~~~~~~~~~~ 172 (283)
T PRK13209 98 LEIMRKAIQLAQDLGIRVIQLAGYDVYYEQANNETRR-----RFIDGLKESVELASRASVTLAFEIMDTPFMNSISKALG 172 (283)
T ss_pred HHHHHHHHHHHHHcCCCEEEECCccccccccHHHHHH-----HHHHHHHHHHHHHHHhCCEEEEeecCCcccCCHHHHHH
Confidence 23456666799888753111 0 11111 0123334445556778887665544332 335555444
Q ss_pred HHHHH
Q 022946 253 LLHTL 257 (289)
Q Consensus 253 ~l~~l 257 (289)
.++.+
T Consensus 173 ll~~v 177 (283)
T PRK13209 173 YAHYL 177 (283)
T ss_pred HHHHh
Confidence 44433
No 482
>TIGR00970 leuA_yeast 2-isopropylmalate synthase, yeast type. A larger family of homologous proteins includes homocitrate synthase, distinct lineages of 2-isopropylmalate synthase, several distinct, uncharacterized, orthologous sets in the Archaea, and other related enzymes. This model describes a family of 2-isopropylmalate synthases as found in yeasts and in a minority of studied bacteria.
Probab=68.04 E-value=1.2e+02 Score=29.35 Aligned_cols=138 Identities=12% Similarity=-0.032 Sum_probs=74.8
Q ss_pred CCCCHHHHHHHHHHHHHcCCcEEEEecccCCCCCCchhHHHHHHHHHHHH-hcCceEEEeCCCCC---HHHHHHHHHcCC
Q 022946 120 KLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIR-DMGMEVCCTLGMLE---KHQAIELKKAGL 195 (289)
Q Consensus 120 ~~~~~eei~~~~~~~~~~g~~~i~i~~~~~~~~ge~~~~~~l~e~i~~ik-~~~~~i~~~~g~l~---~e~l~~L~~aG~ 195 (289)
..++.++=++.++.+.+.|++.|..+. +...+..++.+.++++... ..+..+..-.-... +..++.+..++.
T Consensus 43 ~~~s~e~Ki~ia~~L~~~Gvd~IE~Gf----p~~s~~D~e~v~~i~~~~l~~~~~~i~al~~~~~~did~a~~a~~~~~~ 118 (564)
T TIGR00970 43 DPMSPARKRRYFDLLVRIGFKEIEVGF----PSASQTDFDFVREIIEQGAIPDDVTIQVLTQSREELIERTFEALSGAKR 118 (564)
T ss_pred CCCCHHHHHHHHHHHHHcCCCEEEEeC----CCCCHHHHHHHHHHHHhcCCCCCcEEEEEcCCchhhHHHHHHHhcCCCC
Confidence 448999999999999999999997652 2222344444444443310 11334322111111 223444444444
Q ss_pred CeEecCCCchHH-HHhccCCC--CCHHHHHHHHHHHHHcCCce----eecEEeec-CC-----CHHHHHHHHHHHhcCC
Q 022946 196 TAYNHNLDTSRE-FYSKIITT--RSYDERLETLKHVREAGINV----CSGGIIGL-GE-----AEEDRVGLLHTLATLP 261 (289)
Q Consensus 196 ~~v~i~let~~~-~~~~i~~~--~~~~~~~~~i~~~~~~Gi~v----~~~~i~Gl-ge-----t~ed~~~~l~~l~~l~ 261 (289)
..|.+.+-+.+- ...+++.. ...+...+.++.+++.|... .+.+-+-+ +| ..+.+.+.++.+.+.+
T Consensus 119 ~~v~i~~~~Sd~h~~~~l~~s~ee~l~~~~~~v~~ak~~~~~~~~~~~~~~~v~f~~Ed~~r~d~~~l~~~~~~a~~ag 197 (564)
T TIGR00970 119 ATVHFYNATSILFREVVFRASRAEVQAIATDGTKLVRKCTKQAAKYPGTQWRFEYSPESFSDTELEFAKEVCEAVKEVW 197 (564)
T ss_pred CEEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcccccccccceEEEEEecccCCCCCHHHHHHHHHHHHHhC
Confidence 577777766633 22333332 23555666777788887632 22223323 44 3566677777777763
No 483
>TIGR00289 conserved hypothetical protein TIGR00289. Homologous proteins related to MJ0570 of Methanococcus jannaschii include both the apparent orthologs found by this model above the trusted cutoff, the much longer protein YLR143W from Saccharomyces cerevisiae, and second homologous proteins from Archaeoglobus fulgidus and Pyrococcus horikoshii that appear to represent a second orthologous group.
Probab=68.03 E-value=72 Score=26.75 Aligned_cols=71 Identities=13% Similarity=0.170 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHcCCcEEEEecccCCCCCCchhHHHHHHHHHHHH-hcCceEEEeCCCCCHHHHHHHHHcCCCeEecCCC
Q 022946 125 DAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIR-DMGMEVCCTLGMLEKHQAIELKKAGLTAYNHNLD 203 (289)
Q Consensus 125 eei~~~~~~~~~~g~~~i~i~~~~~~~~ge~~~~~~l~e~i~~ik-~~~~~i~~~~g~l~~e~l~~L~~aG~~~v~i~le 203 (289)
+++.+..+.+.+.|++.+++++- ..++-...++.+- +.|++.....=-.+.+.+.++.++|++.+-+.+.
T Consensus 72 ~~~~~l~~~l~~~gv~~vv~GdI---------~s~~qr~~~e~vc~~~gl~~~~PLW~~d~~~l~e~i~~Gf~aiIv~v~ 142 (222)
T TIGR00289 72 KEVEDLAGQLGELDVEALCIGAI---------ESNYQKSRIDKVCRELGLKSIAPLWHADPEKLMYEVAEKFEVIIVSVS 142 (222)
T ss_pred HHHHHHHHHHHHcCCCEEEECcc---------ccHHHHHHHHHHHHHcCCEEeccccCCCHHHHHHHHHcCCeEEEEEEc
Confidence 34444444555667776665431 1122223333322 4466654443224455555777888887776655
Q ss_pred c
Q 022946 204 T 204 (289)
Q Consensus 204 t 204 (289)
+
T Consensus 143 ~ 143 (222)
T TIGR00289 143 A 143 (222)
T ss_pred c
Confidence 4
No 484
>PRK05742 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=68.01 E-value=39 Score=29.36 Aligned_cols=62 Identities=13% Similarity=0.153 Sum_probs=38.3
Q ss_pred HHHHHcCCcEEEEecccCCCCCCchhHHHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHcCCCeEecCCCc
Q 022946 132 QKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMGMEVCCTLGMLEKHQAIELKKAGLTAYNHNLDT 204 (289)
Q Consensus 132 ~~~~~~g~~~i~i~~~~~~~~ge~~~~~~l~e~i~~ik~~~~~i~~~~g~l~~e~l~~L~~aG~~~v~i~let 204 (289)
.++.+.|++.|-+ + +. ..+.+.++++.++ -.+.+..+.| ++.+.+.++.++|+|.|.+|--+
T Consensus 203 ~eA~~~gaD~I~L-D---~~-----~~e~l~~~v~~~~-~~i~leAsGG-It~~ni~~~a~tGvD~Isvg~lt 264 (277)
T PRK05742 203 RQALAAGADIVML-D---EL-----SLDDMREAVRLTA-GRAKLEASGG-INESTLRVIAETGVDYISIGAMT 264 (277)
T ss_pred HHHHHcCCCEEEE-C---CC-----CHHHHHHHHHHhC-CCCcEEEECC-CCHHHHHHHHHcCCCEEEEChhh
Confidence 3444667776644 2 11 2244555544332 2455555555 78999999999999999987533
No 485
>PRK14057 epimerase; Provisional
Probab=67.74 E-value=79 Score=27.12 Aligned_cols=91 Identities=12% Similarity=0.083 Sum_probs=53.5
Q ss_pred CHHHHHHHHHHHHHcCCcEEEEecccCCCCCCchhHHHHHHHHHHHH----hcC--ceEEEeCCCCCHHHHHHHHHcCCC
Q 022946 123 TKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIR----DMG--MEVCCTLGMLEKHQAIELKKAGLT 196 (289)
Q Consensus 123 ~~eei~~~~~~~~~~g~~~i~i~~~~~~~~ge~~~~~~l~e~i~~ik----~~~--~~i~~~~g~l~~e~l~~L~~aG~~ 196 (289)
+++.+...+. -++.|.+.+....++| ..+.+..++-++.++ +.+ +.+.+..| ++.+.+..+.++|+|
T Consensus 144 p~e~i~~~l~-----~vD~VLvMtV~PGfgG-Q~Fi~~~l~KI~~lr~~~~~~~~~~~IeVDGG-I~~~ti~~l~~aGad 216 (254)
T PRK14057 144 PLDVIIPILS-----DVEVIQLLAVNPGYGS-KMRSSDLHERVAQLLCLLGDKREGKIIVIDGS-LTQDQLPSLIAQGID 216 (254)
T ss_pred CHHHHHHHHH-----hCCEEEEEEECCCCCc-hhccHHHHHHHHHHHHHHHhcCCCceEEEECC-CCHHHHHHHHHCCCC
Confidence 5555554443 2456666554444434 445566666666554 334 34555544 889999999999999
Q ss_pred eEecCCCchHHHHhccCCCCCHHHHHHHHHHH
Q 022946 197 AYNHNLDTSREFYSKIITTRSYDERLETLKHV 228 (289)
Q Consensus 197 ~v~i~let~~~~~~~i~~~~~~~~~~~~i~~~ 228 (289)
.+..| | .++. ..++++.++.++..
T Consensus 217 ~~V~G--S--alF~----~~d~~~~i~~l~~~ 240 (254)
T PRK14057 217 RVVSG--S--ALFR----DDRLVENTRSWRAM 240 (254)
T ss_pred EEEEC--h--HhhC----CCCHHHHHHHHHHH
Confidence 88877 2 2332 23455555555543
No 486
>PF13714 PEP_mutase: Phosphoenolpyruvate phosphomutase; PDB: 1ZLP_A 3EOO_C 1UJQ_D 1O5Q_A 2DUA_A 2HJP_A 2HRW_A 2QIW_A 3KZ2_B 3IH1_B ....
Probab=67.61 E-value=29 Score=29.42 Aligned_cols=68 Identities=13% Similarity=0.191 Sum_probs=31.8
Q ss_pred CCHHHHHHHHHHHHHc--CCcEEEEecccCCCCCCchhHHHHHHHHHHHH---hcCceEEEeCCCCCHHHHHHHHHc
Q 022946 122 MTKDAVMQAAQKAKEA--GSTRFCMGAAWRDTIGRKTNFNQILEYVKDIR---DMGMEVCCTLGMLEKHQAIELKKA 193 (289)
Q Consensus 122 ~~~eei~~~~~~~~~~--g~~~i~i~~~~~~~~ge~~~~~~l~e~i~~ik---~~~~~i~~~~g~l~~e~l~~L~~a 193 (289)
.|.++..+.++.+.+. ... +++..=.+ ... .....+-+.|++.+ +.|-+...-.|..+.+.++++.+.
T Consensus 117 ~~~ee~~~kI~Aa~~a~~~~~-~~I~ARTD-a~~--~~~~~~deaI~R~~aY~eAGAD~ifi~~~~~~~~i~~~~~~ 189 (238)
T PF13714_consen 117 VSPEEMVAKIRAAVDARRDPD-FVIIARTD-AFL--RAEEGLDEAIERAKAYAEAGADMIFIPGLQSEEEIERIVKA 189 (238)
T ss_dssp --HHHHHHHHHHHHHHHSSTT-SEEEEEEC-HHC--HHHHHHHHHHHHHHHHHHTT-SEEEETTSSSHHHHHHHHHH
T ss_pred eCHHHHHHHHHHHHHhccCCe-EEEEEecc-ccc--cCCCCHHHHHHHHHHHHHcCCCEEEeCCCCCHHHHHHHHHh
Confidence 5777877777776642 222 44432110 000 01234444554443 556665555566666666555554
No 487
>PF04131 NanE: Putative N-acetylmannosamine-6-phosphate epimerase; InterPro: IPR007260 This family represents a putative ManNAc-6-P-to-GlcNAc-6P epimerase in the N-acetylmannosamine (ManNAc) utilization pathway found mainly in pathogenic bacteria for the reaction: N-acyl-D-glucosamine 6-phosphate = N-acyl-D-mannosamine 6-phosphate It is probably encoded by the yhcJ gene [].; GO: 0047465 N-acylglucosamine-6-phosphate 2-epimerase activity, 0006051 N-acetylmannosamine metabolic process; PDB: 1Y0E_B 3IGS_A 1YXY_A 3Q58_B.
Probab=67.55 E-value=46 Score=27.15 Aligned_cols=68 Identities=15% Similarity=0.035 Sum_probs=36.8
Q ss_pred HHHHcCCcEEEEecccCCCCCCchhHHHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHcCCCeEecCC
Q 022946 133 KAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMGMEVCCTLGMLEKHQAIELKKAGLTAYNHNL 202 (289)
Q Consensus 133 ~~~~~g~~~i~i~~~~~~~~ge~~~~~~l~e~i~~ik~~~~~i~~~~g~l~~e~l~~L~~aG~~~v~i~l 202 (289)
.+.+.|++-|.-+-.++.+... . ...=+++++.+.+.++.+..-.+.-+++.+.+..++|.+.|.+|=
T Consensus 107 ~A~~~G~D~I~TTLsGYT~~t~-~-~~pD~~lv~~l~~~~~pvIaEGri~tpe~a~~al~~GA~aVVVGs 174 (192)
T PF04131_consen 107 NAAELGFDIIGTTLSGYTPYTK-G-DGPDFELVRELVQADVPVIAEGRIHTPEQAAKALELGAHAVVVGS 174 (192)
T ss_dssp HHHHTT-SEEE-TTTTSSTTST-T-SSHHHHHHHHHHHTTSEEEEESS--SHHHHHHHHHTT-SEEEE-H
T ss_pred HHHHcCCCEEEcccccCCCCCC-C-CCCCHHHHHHHHhCCCcEeecCCCCCHHHHHHHHhcCCeEEEECc
Confidence 3455677766442222222211 1 222334455555457777667777889999999999999888764
No 488
>cd00740 MeTr MeTr subgroup of pterin binding enzymes. This family includes cobalamin-dependent methyltransferases such as methyltetrahydrofolate, corrinoid iron-sulfur protein methyltransferase (MeTr) and methionine synthase (MetH). Cobalamin-dependent methyltransferases catalyze the transfer of a methyl group via a methyl- cob(III)amide intermediate. These include MeTr, a functional heterodimer, and the folate binding domain of MetH.
Probab=67.52 E-value=79 Score=27.03 Aligned_cols=135 Identities=14% Similarity=0.143 Sum_probs=72.8
Q ss_pred CCHHHHHHHHHHHHHcCCcEEEEecccCCCCCCchhHHHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHc--CCCeEe
Q 022946 122 MTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMGMEVCCTLGMLEKHQAIELKKA--GLTAYN 199 (289)
Q Consensus 122 ~~~eei~~~~~~~~~~g~~~i~i~~~~~~~~ge~~~~~~l~e~i~~ik~~~~~i~~~~g~l~~e~l~~L~~a--G~~~v~ 199 (289)
.+.+.+++.++...+.|++-+-++++. ....+.....++++.++.+. ++.+ +....+.+.+++-.++ |.+.|+
T Consensus 23 ~~~d~~~~~A~~~~~~GAdiIDIG~~~-~~~~~~ee~~r~v~~i~~~~--~~pi--SIDT~~~~v~e~aL~~~~G~~iIN 97 (252)
T cd00740 23 EDYDEALDVARQQVEGGAQILDLNVDY-GGLDGVSAMKWLLNLLATEP--TVPL--MLDSTNWEVIEAGLKCCQGKCVVN 97 (252)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEECCCC-CCCCHHHHHHHHHHHHHHhc--CCcE--EeeCCcHHHHHHHHhhCCCCcEEE
Confidence 588999999999999999988886632 11122233344444443321 3333 3344556666544443 665554
Q ss_pred -cCCCc----hHHHHh---ccC------------CCCCHHHHH----HHHHHHH-HcCC---ceeecEEeecCC--CHHH
Q 022946 200 -HNLDT----SREFYS---KII------------TTRSYDERL----ETLKHVR-EAGI---NVCSGGIIGLGE--AEED 249 (289)
Q Consensus 200 -i~let----~~~~~~---~i~------------~~~~~~~~~----~~i~~~~-~~Gi---~v~~~~i~Glge--t~ed 249 (289)
++.+. .+++.+ +.. ...+.++.. +.++.+. +.|+ ++..+-.+|++- +.++
T Consensus 98 sIs~~~~~e~~~~~~~~~~~~~~~vV~m~~~~~g~p~t~~~~~~~~~~~~~~~~~~~gi~~~~IiiDPgig~~~~~~~e~ 177 (252)
T cd00740 98 SINLEDGEERFLKVARLAKEHGAAVVVLAFDEQGQAKTRDKKVEIAERAYEALTEFVGFPPEDIIFDPLILPIATGIEEH 177 (252)
T ss_pred eCCCCCCccccHHHHHHHHHhCCCEEEeccCCCCCCCCHHHHHHHHHHHHHHHHHHcCCCHHHEEEeCCcccccCccHHH
Confidence 33332 122211 110 012223323 3344444 3576 588888888833 4566
Q ss_pred HHHHHHHHhcCC
Q 022946 250 RVGLLHTLATLP 261 (289)
Q Consensus 250 ~~~~l~~l~~l~ 261 (289)
-...+..+..+.
T Consensus 178 ~~~~l~~l~~~~ 189 (252)
T cd00740 178 RPYALETIDAIR 189 (252)
T ss_pred HHHHHHHHHHHH
Confidence 778888888884
No 489
>PF07745 Glyco_hydro_53: Glycosyl hydrolase family 53; InterPro: IPR011683 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This domain is found in family 53 of the glycosyl hydrolase classification []. These enzymes are endo-1,4- beta-galactanases (3.2.1.89 from EC). The structure of this domain is known [] and has a TIM barrel fold.; GO: 0015926 glucosidase activity; PDB: 1HJQ_A 1HJS_A 1HJU_B 1FHL_A 1FOB_A 2GFT_A 1UR4_B 1UR0_A 1R8L_B 2CCR_A ....
Probab=67.27 E-value=15 Score=32.85 Aligned_cols=95 Identities=17% Similarity=0.123 Sum_probs=53.3
Q ss_pred cCceEEEeCCCCCHHHHHHHHHcCCCeEecCCCchHHHHhccCCCCCHHHHHHHHHHHHHcCCceeecEEeec-------
Q 022946 171 MGMEVCCTLGMLEKHQAIELKKAGLTAYNHNLDTSREFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGL------- 243 (289)
Q Consensus 171 ~~~~i~~~~g~l~~e~l~~L~~aG~~~v~i~let~~~~~~~i~~~~~~~~~~~~i~~~~~~Gi~v~~~~i~Gl------- 243 (289)
.|......+|. ..+.++.||++|++.|.+-+=.-|.. ..-.+.++.++..++++++|+++..+|-+.-
T Consensus 15 ~G~~f~~~~G~-~~d~~~ilk~~G~N~vRlRvwv~P~~----~g~~~~~~~~~~akrak~~Gm~vlldfHYSD~WaDPg~ 89 (332)
T PF07745_consen 15 AGVKFYDENGQ-EKDLFQILKDHGVNAVRLRVWVNPYD----GGYNDLEDVIALAKRAKAAGMKVLLDFHYSDFWADPGK 89 (332)
T ss_dssp TT---B-TTSS-B--HHHHHHHTT--EEEEEE-SS-TT----TTTTSHHHHHHHHHHHHHTT-EEEEEE-SSSS--BTTB
T ss_pred cCCeEECCCCC-CCCHHHHHHhcCCCeEEEEeccCCcc----cccCCHHHHHHHHHHHHHCCCeEEEeecccCCCCCCCC
Confidence 35444334563 47789999999999888755221111 1234799999999999999999988877621
Q ss_pred --------CCCHHHH--------HHHHHHHhcCCCCCCeeeec
Q 022946 244 --------GEAEEDR--------VGLLHTLATLPTHPESVPIN 270 (289)
Q Consensus 244 --------get~ed~--------~~~l~~l~~l~~~~~~v~i~ 270 (289)
+.+.+++ .+.|..|++.+..|+.|+|.
T Consensus 90 Q~~P~aW~~~~~~~l~~~v~~yT~~vl~~l~~~G~~pd~VQVG 132 (332)
T PF07745_consen 90 QNKPAAWANLSFDQLAKAVYDYTKDVLQALKAAGVTPDMVQVG 132 (332)
T ss_dssp -B--TTCTSSSHHHHHHHHHHHHHHHHHHHHHTT--ESEEEES
T ss_pred CCCCccCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCccEEEeC
Confidence 1123333 34556666655457777764
No 490
>cd02809 alpha_hydroxyacid_oxid_FMN Family of homologous FMN-dependent alpha-hydroxyacid oxidizing enzymes. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). In green plants, glycolate oxidase is one of the key enzymes in photorespiration where it oxidizes glycolate to glyoxylate. LMO catalyzes the oxidation of L-lactate to acetate and carbon dioxide. MDH oxidizes (S)-mandelate to phenylglyoxalate. It is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate.
Probab=67.04 E-value=59 Score=28.48 Aligned_cols=71 Identities=18% Similarity=0.168 Sum_probs=44.8
Q ss_pred HHHHHHcCCcEEEEeccc-CCCCCCchhHHHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHcCCCeEecCC
Q 022946 131 AQKAKEAGSTRFCMGAAW-RDTIGRKTNFNQILEYVKDIRDMGMEVCCTLGMLEKHQAIELKKAGLTAYNHNL 202 (289)
Q Consensus 131 ~~~~~~~g~~~i~i~~~~-~~~~ge~~~~~~l~e~i~~ik~~~~~i~~~~g~l~~e~l~~L~~aG~~~v~i~l 202 (289)
++.+.+.|++.|++.+.+ ....+.+..+..+.++.+.+. ..+++..+.|..+...+.+...+|.+.|.++=
T Consensus 186 a~~a~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~-~~ipvia~GGI~~~~d~~kal~lGAd~V~ig~ 257 (299)
T cd02809 186 ALRAVDAGADGIVVSNHGGRQLDGAPATIDALPEIVAAVG-GRIEVLLDGGIRRGTDVLKALALGADAVLIGR 257 (299)
T ss_pred HHHHHHCCCCEEEEcCCCCCCCCCCcCHHHHHHHHHHHhc-CCCeEEEeCCCCCHHHHHHHHHcCCCEEEEcH
Confidence 456678899999885532 221122333444444433332 14788888888887777666679999998875
No 491
>PRK07028 bifunctional hexulose-6-phosphate synthase/ribonuclease regulator; Validated
Probab=66.98 E-value=1.1e+02 Score=28.40 Aligned_cols=93 Identities=12% Similarity=0.112 Sum_probs=56.5
Q ss_pred CCHHHHHHHHHHHHHcCCcEEEEecccCCCCCCchhHHHHHHHHHHHHhc-Cc-eEEEe---CCCCCHHHHHHHHHcCCC
Q 022946 122 MTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDM-GM-EVCCT---LGMLEKHQAIELKKAGLT 196 (289)
Q Consensus 122 ~~~eei~~~~~~~~~~g~~~i~i~~~~~~~~ge~~~~~~l~e~i~~ik~~-~~-~i~~~---~g~l~~e~l~~L~~aG~~ 196 (289)
.+.++.++.++.+.+.|++.+.++. |.......+.++.+++. +. .+... .+. ....++.+.++|.+
T Consensus 13 ~~~~~~~~~~~~~~~~Gv~~ie~g~--------p~~~~~~~~~i~~l~~~~~~~~ii~D~kl~d~-g~~~v~~a~~aGAd 83 (430)
T PRK07028 13 LELDRAVEIAKEAVAGGADWIEAGT--------PLIKSEGMNAIRTLRKNFPDHTIVADMKTMDT-GAIEVEMAAKAGAD 83 (430)
T ss_pred CCHHHHHHHHHHHHhcCCcEEEeCC--------HHHHHhhHHHHHHHHHHCCCCEEEEEeeeccc-hHHHHHHHHHcCCC
Confidence 5789999999998889998886521 32334456677776643 22 22211 122 45588999999999
Q ss_pred eEecCCCchHHHHhccCCCCCHHHHHHHHHHHHHcCCce
Q 022946 197 AYNHNLDTSREFYSKIITTRSYDERLETLKHVREAGINV 235 (289)
Q Consensus 197 ~v~i~let~~~~~~~i~~~~~~~~~~~~i~~~~~~Gi~v 235 (289)
.+.+.-++. .....+.++.+++.|+.+
T Consensus 84 gV~v~g~~~------------~~~~~~~i~~a~~~G~~~ 110 (430)
T PRK07028 84 IVCILGLAD------------DSTIEDAVRAARKYGVRL 110 (430)
T ss_pred EEEEecCCC------------hHHHHHHHHHHHHcCCEE
Confidence 988532221 111345556666666654
No 492
>cd01573 modD_like ModD; Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase) present in some modABC operons in bacteria, which are involved in molybdate transport. In general, QPRTases are part of the de novo synthesis pathway of NAD in both prokaryotes and eukaryotes. They catalyse the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide.
Probab=66.95 E-value=49 Score=28.67 Aligned_cols=58 Identities=17% Similarity=0.233 Sum_probs=37.8
Q ss_pred HHcCCcEEEEecccCCCCCCchhHHHHHHHHHHHHhc--CceEEEeCCCCCHHHHHHHHHcCCCeEecCC
Q 022946 135 KEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDM--GMEVCCTLGMLEKHQAIELKKAGLTAYNHNL 202 (289)
Q Consensus 135 ~~~g~~~i~i~~~~~~~~ge~~~~~~l~e~i~~ik~~--~~~i~~~~g~l~~e~l~~L~~aG~~~v~i~l 202 (289)
.+.|++.+-+.- . +...+.++++.++.. .+.+..+.| ++.+.+.++.++|+|.|.++-
T Consensus 200 ~~~gaD~I~ld~----~-----~p~~l~~~~~~~~~~~~~i~i~AsGG-I~~~ni~~~~~~Gvd~I~vsa 259 (272)
T cd01573 200 AEAGADILQLDK----F-----SPEELAELVPKLRSLAPPVLLAAAGG-INIENAAAYAAAGADILVTSA 259 (272)
T ss_pred HHcCCCEEEECC----C-----CHHHHHHHHHHHhccCCCceEEEECC-CCHHHHHHHHHcCCcEEEECh
Confidence 456777664421 1 123444555555533 466766666 689999999999999997653
No 493
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=66.62 E-value=85 Score=27.06 Aligned_cols=136 Identities=15% Similarity=0.160 Sum_probs=75.4
Q ss_pred CHHHHHHHHHHHHHcCCcEEEEecccCCCCC-Cc-------------hhHHHHHHHHHHHHh-cCce-EEEe--CC---C
Q 022946 123 TKDAVMQAAQKAKEAGSTRFCMGAAWRDTIG-RK-------------TNFNQILEYVKDIRD-MGME-VCCT--LG---M 181 (289)
Q Consensus 123 ~~eei~~~~~~~~~~g~~~i~i~~~~~~~~g-e~-------------~~~~~l~e~i~~ik~-~~~~-i~~~--~g---~ 181 (289)
+.+.-.+.++.+.+.|++-+.++--..+|.. .| ...+.++++++++++ ..+. +..+ |- .
T Consensus 27 ~~~~~~~~~~~l~~~Gad~iElGiPfSDP~aDGpvIq~a~~rAL~~g~~~~~~~~~~~~~r~~~~~p~vlm~Y~N~i~~~ 106 (263)
T CHL00200 27 DIVITKKALKILDKKGADIIELGIPYSDPLADGPIIQEASNRALKQGINLNKILSILSEVNGEIKAPIVIFTYYNPVLHY 106 (263)
T ss_pred CHHHHHHHHHHHHHCCCCEEEECCCCCCCCccCHHHHHHHHHHHHcCCCHHHHHHHHHHHhcCCCCCEEEEecccHHHHh
Confidence 6688888888888999998888543223321 12 122467888888873 3444 2222 11 1
Q ss_pred CCHHHHHHHHHcCCCeEecCCCch---HHHHhccCC----------CCCHHHHHHHHHHHHHcCCceeecEEeec-CCC-
Q 022946 182 LEKHQAIELKKAGLTAYNHNLDTS---REFYSKIIT----------TRSYDERLETLKHVREAGINVCSGGIIGL-GEA- 246 (289)
Q Consensus 182 l~~e~l~~L~~aG~~~v~i~let~---~~~~~~i~~----------~~~~~~~~~~i~~~~~~Gi~v~~~~i~Gl-get- 246 (289)
=.++.++.++++|++.+.+.-... .+.++.+.. +.+.+++++.|.... .|+-.... ..|. |..
T Consensus 107 G~e~F~~~~~~aGvdgviipDLP~ee~~~~~~~~~~~gi~~I~lv~PtT~~eri~~i~~~a-~gFIY~vS-~~GvTG~~~ 184 (263)
T CHL00200 107 GINKFIKKISQAGVKGLIIPDLPYEESDYLISVCNLYNIELILLIAPTSSKSRIQKIARAA-PGCIYLVS-TTGVTGLKT 184 (263)
T ss_pred CHHHHHHHHHHcCCeEEEecCCCHHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHhC-CCcEEEEc-CCCCCCCCc
Confidence 125678999999999998754333 233333221 223444444333321 23432222 5566 543
Q ss_pred --HHHHHHHHHHHhcC
Q 022946 247 --EEDRVGLLHTLATL 260 (289)
Q Consensus 247 --~ed~~~~l~~l~~l 260 (289)
.+++.+.+..+++.
T Consensus 185 ~~~~~~~~~i~~ir~~ 200 (263)
T CHL00200 185 ELDKKLKKLIETIKKM 200 (263)
T ss_pred cccHHHHHHHHHHHHh
Confidence 35667777777654
No 494
>COG1312 UxuA D-mannonate dehydratase [Carbohydrate transport and metabolism]
Probab=66.51 E-value=49 Score=29.48 Aligned_cols=33 Identities=21% Similarity=0.321 Sum_probs=25.6
Q ss_pred CHHHHHHHHHHHHHcCCc-eeecEEeecCCCHHH
Q 022946 217 SYDERLETLKHVREAGIN-VCSGGIIGLGEAEED 249 (289)
Q Consensus 217 ~~~~~~~~i~~~~~~Gi~-v~~~~i~Glget~ed 249 (289)
-.+.+.++|+++.++|++ +|.+||.+++=|.-|
T Consensus 81 ~Ieny~~tirnLa~~GI~vvCYNfMpv~dWtRTd 114 (362)
T COG1312 81 YIENYKQTIRNLARAGIKVVCYNFMPVFDWTRTD 114 (362)
T ss_pred HHHHHHHHHHHHHhcCCcEEEeccccccCccccc
Confidence 357889999999999998 677899777444433
No 495
>PRK06256 biotin synthase; Validated
Probab=66.44 E-value=38 Score=30.10 Aligned_cols=98 Identities=19% Similarity=0.212 Sum_probs=50.0
Q ss_pred HHHHcCCcEEEEecc-cCC---CCCCchhHHHHHHHHHHHHhcCceEEEe--CCC--CC---HHHHHHHHHcCCCeEecC
Q 022946 133 KAKEAGSTRFCMGAA-WRD---TIGRKTNFNQILEYVKDIRDMGMEVCCT--LGM--LE---KHQAIELKKAGLTAYNHN 201 (289)
Q Consensus 133 ~~~~~g~~~i~i~~~-~~~---~~ge~~~~~~l~e~i~~ik~~~~~i~~~--~g~--l~---~e~l~~L~~aG~~~v~i~ 201 (289)
.+++.|++.+.+.-. ... .......+++.++.++.+++.|+.+.+. .|. -. .+.+..+++.+++.+.++
T Consensus 157 ~LkeaG~~~v~~~lEts~~~~~~i~~~~t~~~~i~~i~~a~~~Gi~v~~~~I~GlgEt~ed~~~~~~~l~~l~~~~v~i~ 236 (336)
T PRK06256 157 RLKEAGVDRYNHNLETSRSYFPNVVTTHTYEDRIDTCEMVKAAGIEPCSGGIIGMGESLEDRVEHAFFLKELDADSIPIN 236 (336)
T ss_pred HHHHhCCCEEecCCccCHHHHhhcCCCCCHHHHHHHHHHHHHcCCeeccCeEEeCCCCHHHHHHHHHHHHhCCCCEEeec
Confidence 455778887765210 000 0111234577778888888777775432 222 11 234567777788887765
Q ss_pred CCch-HHHHhccCCCCCHHHHHHHHHHHHH
Q 022946 202 LDTS-REFYSKIITTRSYDERLETLKHVRE 230 (289)
Q Consensus 202 let~-~~~~~~i~~~~~~~~~~~~i~~~~~ 230 (289)
.=.. +.+--.-.+.-+.++.++.+..++-
T Consensus 237 ~l~P~pGT~l~~~~~~~~~e~l~~ia~~Rl 266 (336)
T PRK06256 237 FLNPIPGTPLENHPELTPLECLKTIAIFRL 266 (336)
T ss_pred ccccCCCCCCCCCCCCCHHHHHHHHHHHHH
Confidence 4332 2211011122355666665555444
No 496
>cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water. IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis.
Probab=66.44 E-value=62 Score=26.68 Aligned_cols=65 Identities=12% Similarity=0.120 Sum_probs=40.4
Q ss_pred HHHHHcCCcEEEEecccCCCCCCchhHHHHHHHHHHHHh---cCceEEEeCCCCCHHHHHHHHHcCCCeEecCC
Q 022946 132 QKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRD---MGMEVCCTLGMLEKHQAIELKKAGLTAYNHNL 202 (289)
Q Consensus 132 ~~~~~~g~~~i~i~~~~~~~~ge~~~~~~l~e~i~~ik~---~~~~i~~~~g~l~~e~l~~L~~aG~~~v~i~l 202 (289)
+.+.+.|++.+.+++-+.... +..+ +.++.+++ .++.+....|..+.+.+.++.++|++.+.++=
T Consensus 135 ~~~~~~g~~~i~~t~~~~~~~--~~~~----~~~~~l~~~~~~~~pvia~gGI~s~edi~~~~~~Ga~gvivGs 202 (217)
T cd00331 135 ERALALGAKIIGINNRDLKTF--EVDL----NTTERLAPLIPKDVILVSESGISTPEDVKRLAEAGADAVLIGE 202 (217)
T ss_pred HHHHHcCCCEEEEeCCCcccc--CcCH----HHHHHHHHhCCCCCEEEEEcCCCCHHHHHHHHHcCCCEEEECH
Confidence 344456777776653221111 1122 34444442 25677777888888999999999999988763
No 497
>cd01321 ADGF Adenosine deaminase-related growth factors (ADGF), a novel family of secreted growth-factors with sequence similarty to adenosine deaminase.
Probab=66.39 E-value=38 Score=30.47 Aligned_cols=53 Identities=8% Similarity=-0.011 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHhcC--ceEEEeCCCCC-------HHHHHHHHHcCCCeEecCCCch--HHHHhc
Q 022946 158 FNQILEYVKDIRDMG--MEVCCTLGMLE-------KHQAIELKKAGLTAYNHNLDTS--REFYSK 211 (289)
Q Consensus 158 ~~~l~e~i~~ik~~~--~~i~~~~g~l~-------~e~l~~L~~aG~~~v~i~let~--~~~~~~ 211 (289)
...+.++++.+++.| +.+..+.|... ..+.+.+ ..|.++|.+|+... +++.+.
T Consensus 178 ~~~f~~~f~~ar~~g~~l~~t~HAGE~~~~~~~~~~~v~~al-~lg~~RIGHG~~~~~dp~ll~~ 241 (345)
T cd01321 178 LLDFLPQLLWFPKQCAEIPFFFHAGETNGDGTETDENLVDAL-LLNTKRIGHGFALPKHPLLMDL 241 (345)
T ss_pred HHHHHHHHHHHHHhCCCCceEeecCCCcCCCCCChhHHHHHH-HhCCCcCccccccCcCHHHHHH
Confidence 466777777777777 78777776543 2444555 68999999998775 444443
No 498
>TIGR02090 LEU1_arch isopropylmalate/citramalate/homocitrate synthases. Methanogens, then should and aparrently do contain all three of these enzymes. Unfortunately, phylogenetic trees do not resolve into three unambiguous clades, making assignment of function to particular genes problematic. Other archaea which lack a threonine dehydratase (mainly Euryarchaeota) should contain both a CimA and a LeuA gene. This is true of, for example, archaeoglobus fulgidis, but not for the Pyrococci which have none in this clade, but one in TIGR00973 and one in TIGRT00977 which may fulfill these roles. Other species which have only one hit to this model and lack threonine dehydratase are very likely LeuA enzymes.
Probab=66.25 E-value=39 Score=30.61 Aligned_cols=78 Identities=21% Similarity=0.407 Sum_probs=47.3
Q ss_pred CCHHHHHHHHHHHHHcCCcEEEEecccCCCCCCchhHHHHHHHHHHHHh-cC--ceEEEe--CCCCCHHHHHHHHHcCCC
Q 022946 122 MTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRD-MG--MEVCCT--LGMLEKHQAIELKKAGLT 196 (289)
Q Consensus 122 ~~~eei~~~~~~~~~~g~~~i~i~~~~~~~~ge~~~~~~l~e~i~~ik~-~~--~~i~~~--~g~l~~e~l~~L~~aG~~ 196 (289)
.+++.+.+.++.+.+.|++.|.+.. +.|- ..-..+.++++.+++ .+ +.++++ .|.-....+..+ ++|++
T Consensus 138 ~~~~~l~~~~~~~~~~g~~~i~l~D----T~G~-~~P~~v~~li~~l~~~~~~~l~~H~Hnd~GlA~AN~laA~-~aGa~ 211 (363)
T TIGR02090 138 TDIDFLIKVFKRAEEAGADRINIAD----TVGV-LTPQKMEELIKKLKENVKLPISVHCHNDFGLATANSIAGV-KAGAE 211 (363)
T ss_pred CCHHHHHHHHHHHHhCCCCEEEEeC----CCCc-cCHHHHHHHHHHHhcccCceEEEEecCCCChHHHHHHHHH-HCCCC
Confidence 4778888888888888998888854 2221 122455556665552 22 334444 444444445555 56898
Q ss_pred eEecCCCch
Q 022946 197 AYNHNLDTS 205 (289)
Q Consensus 197 ~v~i~let~ 205 (289)
.|..++.+.
T Consensus 212 ~vd~s~~Gl 220 (363)
T TIGR02090 212 QVHVTVNGI 220 (363)
T ss_pred EEEEEeecc
Confidence 888776553
No 499
>TIGR02403 trehalose_treC alpha,alpha-phosphotrehalase. Trehalose is a glucose disaccharide that serves in many biological systems as a compatible solute for protection against hyperosmotic and thermal stress. This family describes trehalose-6-phosphate hydrolase, product of the treC (or treA) gene, which is often found together with a trehalose uptake transporter and a trehalose operon repressor.
Probab=66.13 E-value=22 Score=34.10 Aligned_cols=33 Identities=9% Similarity=0.138 Sum_probs=28.2
Q ss_pred CCHHHHHHHHHHHHHcCCceeecEEeec-CCCHH
Q 022946 216 RSYDERLETLKHVREAGINVCSGGIIGL-GEAEE 248 (289)
Q Consensus 216 ~~~~~~~~~i~~~~~~Gi~v~~~~i~Gl-get~e 248 (289)
++.++..+.++.|++.||+|..++++.+ +....
T Consensus 72 Gt~~~~~~lv~~ah~~gi~vilD~v~NH~~~~~~ 105 (543)
T TIGR02403 72 GTMADFEELVSEAKKRNIKIMLDMVFNHTSTEHE 105 (543)
T ss_pred CCHHHHHHHHHHHHHCCCEEEEEECccccccchH
Confidence 4779999999999999999999999988 54433
No 500
>COG0407 HemE Uroporphyrinogen-III decarboxylase [Coenzyme metabolism]
Probab=65.72 E-value=1e+02 Score=27.78 Aligned_cols=131 Identities=18% Similarity=0.252 Sum_probs=69.2
Q ss_pred HHHHHHHHHcCCcEEEEecccCCCCCCc----hhHHHHHHHHHHHHhc--CceEEEeCCCCCHHHHHHHHHcCCCeEecC
Q 022946 128 MQAAQKAKEAGSTRFCMGAAWRDTIGRK----TNFNQILEYVKDIRDM--GMEVCCTLGMLEKHQAIELKKAGLTAYNHN 201 (289)
Q Consensus 128 ~~~~~~~~~~g~~~i~i~~~~~~~~ge~----~~~~~l~e~i~~ik~~--~~~i~~~~g~l~~e~l~~L~~aG~~~v~i~ 201 (289)
+..++...+.|++.+.+..+|....... ..++...++++.+++. ++.+.-. ..-....+..|.+.|+|.+++.
T Consensus 192 i~Yl~~qi~aGAdavqifDsW~g~l~~~~~~~f~~~~~~~i~~~vk~~~~~~pii~f-~~ga~~~l~~m~~~g~d~l~vd 270 (352)
T COG0407 192 IEYLKAQIEAGADAVQIFDSWAGVLSMIDYDEFVLPYMKRIVREVKEVKGGVPVIHF-CKGAGHLLEDMAKTGFDVLGVD 270 (352)
T ss_pred HHHHHHHHHhCCCEEEeeccccccCCcccHHHHhhhHHHHHHHHHHHhCCCCcEEEE-CCCcHHHHHHHHhcCCcEEeec
Confidence 3344445567999998866543222111 1224555566666643 2333222 2233567889999999988753
Q ss_pred CCch-HHHHhccCCC-------------CCHHHHHHHHHHHHHcCCceeecEEeec--C---C-CHHHHHHHHHHHhcC
Q 022946 202 LDTS-REFYSKIITT-------------RSYDERLETLKHVREAGINVCSGGIIGL--G---E-AEEDRVGLLHTLATL 260 (289)
Q Consensus 202 let~-~~~~~~i~~~-------------~~~~~~~~~i~~~~~~Gi~v~~~~i~Gl--g---e-t~ed~~~~l~~l~~l 260 (289)
=-.. .+..+.+..+ .+.+.+.+-.+.+.+.|... .+.|+.+ | + ..+.+..+++.+.++
T Consensus 271 w~v~l~~a~~~~~~~~~lqGNldP~lL~~~~~~i~~~~~~iL~~~~~~-~~~IfnlGhGI~P~tp~e~v~~lve~v~~~ 348 (352)
T COG0407 271 WRVDLKEAKKRLGDKVALQGNLDPALLYAPPEAIKEEVKRILEDGGDG-SGYIFNLGHGILPETPPENVKALVEAVHEY 348 (352)
T ss_pred cccCHHHHHHHhCCCceEEeccChHhhcCCHHHHHHHHHHHHHHhccC-CCceecCCCCcCCCCCHHHHHHHHHHHHHh
Confidence 2222 3333322211 24577777777777766655 4444433 2 2 235555666655554
Done!