BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 022947
(289 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1SEV|A Chain A, Mature And Translocatable Forms Of Glyoxysomal Malate
Dehydrogenase Have Different Activities And Stabilities
But Similar Crystal Structures
pdb|1SEV|B Chain B, Mature And Translocatable Forms Of Glyoxysomal Malate
Dehydrogenase Have Different Activities And Stabilities
But Similar Crystal Structures
Length = 362
Score = 482 bits (1241), Expect = e-137, Method: Compositional matrix adjust.
Identities = 238/271 (87%), Positives = 249/271 (91%), Gaps = 1/271 (0%)
Query: 3 QPTSGANQRIARIAAHLHPPTLQIEGESSGLGRMDCRAKGGSPGFKVAVLGAAGGIGQPL 62
QP NQRIARI+AHLHPP Q+E ESS L R +CRAKGG+PGFKVA+LGAAGGIGQPL
Sbjct: 2 QPIPDVNQRIARISAHLHPPKSQME-ESSALRRANCRAKGGAPGFKVAILGAAGGIGQPL 60
Query: 63 AMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPA 122
AMLMK+NPLVSVLHLYDVVN PGVTADISHMDT AVVRGFLGQQQLE ALTGMD++I+PA
Sbjct: 61 AMLMKMNPLVSVLHLYDVVNAPGVTADISHMDTGAVVRGFLGQQQLEAALTGMDLIIVPA 120
Query: 123 GVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGT 182
GVPRKPGMTRDDLF INAGIVKTLCEGIAKCCP+AIVNLISNPVNSTVPIAAEVFKK GT
Sbjct: 121 GVPRKPGMTRDDLFKINAGIVKTLCEGIAKCCPRAIVNLISNPVNSTVPIAAEVFKKAGT 180
Query: 183 YDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSCSLTP 242
YDPKRLLGVTMLDVVRANTFVAEVLGLDPR+VDVPVVGGHAGVTILPLLSQVKP S T
Sbjct: 181 YDPKRLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPSSFTQ 240
Query: 243 TEIDYLTDRIQNGGTEVVEAKTGAGSATLSM 273
EI YLTDRIQNGGTEVVEAK GAGSATLSM
Sbjct: 241 EEISYLTDRIQNGGTEVVEAKAGAGSATLSM 271
>pdb|1SMK|A Chain A, Mature And Translocatable Forms Of Glyoxysomal Malate
Dehydrogenase Have Different Activities And Stabilities
But Similar Crystal Structures
pdb|1SMK|B Chain B, Mature And Translocatable Forms Of Glyoxysomal Malate
Dehydrogenase Have Different Activities And Stabilities
But Similar Crystal Structures
pdb|1SMK|C Chain C, Mature And Translocatable Forms Of Glyoxysomal Malate
Dehydrogenase Have Different Activities And Stabilities
But Similar Crystal Structures
pdb|1SMK|D Chain D, Mature And Translocatable Forms Of Glyoxysomal Malate
Dehydrogenase Have Different Activities And Stabilities
But Similar Crystal Structures
pdb|1SMK|E Chain E, Mature And Translocatable Forms Of Glyoxysomal Malate
Dehydrogenase Have Different Activities And Stabilities
But Similar Crystal Structures
pdb|1SMK|F Chain F, Mature And Translocatable Forms Of Glyoxysomal Malate
Dehydrogenase Have Different Activities And Stabilities
But Similar Crystal Structures
pdb|1SMK|G Chain G, Mature And Translocatable Forms Of Glyoxysomal Malate
Dehydrogenase Have Different Activities And Stabilities
But Similar Crystal Structures
pdb|1SMK|H Chain H, Mature And Translocatable Forms Of Glyoxysomal Malate
Dehydrogenase Have Different Activities And Stabilities
But Similar Crystal Structures
Length = 326
Score = 438 bits (1127), Expect = e-123, Method: Compositional matrix adjust.
Identities = 215/235 (91%), Positives = 223/235 (94%)
Query: 39 RAKGGSPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAV 98
RAKGG+PGFKVA+LGAAGGIGQPLAMLMK+NPLVSVLHLYDVVN PGVTADISHMDT AV
Sbjct: 1 RAKGGAPGFKVAILGAAGGIGQPLAMLMKMNPLVSVLHLYDVVNAPGVTADISHMDTGAV 60
Query: 99 VRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAI 158
VRGFLGQQQLE ALTGMD++I+PAGVPRKPGMTRDDLF INAGIVKTLCEGIAKCCP+AI
Sbjct: 61 VRGFLGQQQLEAALTGMDLIIVPAGVPRKPGMTRDDLFKINAGIVKTLCEGIAKCCPRAI 120
Query: 159 VNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPV 218
VNLISNPVNSTVPIAAEVFKK GTYDPKRLLGVTMLDVVRANTFVAEVLGLDPR+VDVPV
Sbjct: 121 VNLISNPVNSTVPIAAEVFKKAGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPRDVDVPV 180
Query: 219 VGGHAGVTILPLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEAKTGAGSATLSM 273
VGGHAGVTILPLLSQVKP S T EI YLTDRIQNGGTEVVEAK GAGSATLSM
Sbjct: 181 VGGHAGVTILPLLSQVKPPSSFTQEEISYLTDRIQNGGTEVVEAKAGAGSATLSM 235
>pdb|2DFD|A Chain A, Crystal Structure Of Human Malate Dehydrogenase Type 2
pdb|2DFD|B Chain B, Crystal Structure Of Human Malate Dehydrogenase Type 2
pdb|2DFD|C Chain C, Crystal Structure Of Human Malate Dehydrogenase Type 2
pdb|2DFD|D Chain D, Crystal Structure Of Human Malate Dehydrogenase Type 2
Length = 342
Score = 301 bits (770), Expect = 4e-82, Method: Compositional matrix adjust.
Identities = 146/226 (64%), Positives = 180/226 (79%)
Query: 48 KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQ 107
KVAVLGA+GGIGQPL++L+K +PLVS L LYD+ +TPGV AD+SH++T A V+G+LG +Q
Sbjct: 30 KVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHTPGVAADLSHIETKAAVKGYLGPEQ 89
Query: 108 LEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVN 167
L D L G D+V+IPAGVPRKPGMTRDDLFN NA IV TL A+ CP+A++ +I+NPVN
Sbjct: 90 LPDCLKGCDVVVIPAGVPRKPGMTRDDLFNTNATIVATLTAACAQHCPEAMICVIANPVN 149
Query: 168 STVPIAAEVFKKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTI 227
ST+PI AEVFKK G Y+P ++ GVT LD+VRANTFVAE+ GLDP V+VPV+GGHAG TI
Sbjct: 150 STIPITAEVFKKHGVYNPNKIFGVTTLDIVRANTFVAELKGLDPARVNVPVIGGHAGKTI 209
Query: 228 LPLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEAKTGAGSATLSM 273
+PL+SQ P ++ LT RIQ GTEVV+AK GAGSATLSM
Sbjct: 210 IPLISQCTPKVDFPQDQLTALTGRIQEAGTEVVKAKAGAGSATLSM 255
>pdb|1MLD|A Chain A, Refined Structure Of Mitochondrial Malate Dehydrogenase
From Porcine Heart And The Consensus Structure For
Dicarboxylic Acid Oxidoreductases
pdb|1MLD|B Chain B, Refined Structure Of Mitochondrial Malate Dehydrogenase
From Porcine Heart And The Consensus Structure For
Dicarboxylic Acid Oxidoreductases
pdb|1MLD|C Chain C, Refined Structure Of Mitochondrial Malate Dehydrogenase
From Porcine Heart And The Consensus Structure For
Dicarboxylic Acid Oxidoreductases
pdb|1MLD|D Chain D, Refined Structure Of Mitochondrial Malate Dehydrogenase
From Porcine Heart And The Consensus Structure For
Dicarboxylic Acid Oxidoreductases
Length = 314
Score = 298 bits (764), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 146/226 (64%), Positives = 177/226 (78%)
Query: 48 KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQ 107
KVAVLGA+GGIGQPL++L+K +PLVS L LYD+ +TPGV AD+SH++T A V+G+LG +Q
Sbjct: 2 KVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHTPGVAADLSHIETRATVKGYLGPEQ 61
Query: 108 LEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVN 167
L D L G D+V+IPAGVPRKPGMTRDDLFN NA IV TL A+ CP A++ +ISNPVN
Sbjct: 62 LPDCLKGCDVVVIPAGVPRKPGMTRDDLFNTNATIVATLTAACAQHCPDAMICIISNPVN 121
Query: 168 STVPIAAEVFKKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTI 227
ST+PI AEVFKK G Y+P ++ GVT LD+VRAN FVAE+ GLDP V VPV+GGHAG TI
Sbjct: 122 STIPITAEVFKKHGVYNPNKIFGVTTLDIVRANAFVAELKGLDPARVSVPVIGGHAGKTI 181
Query: 228 LPLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEAKTGAGSATLSM 273
+PL+SQ P ++ LT RIQ GTEVV+AK GAGSATLSM
Sbjct: 182 IPLISQCTPKVDFPQDQLSTLTGRIQEAGTEVVKAKAGAGSATLSM 227
>pdb|2PWZ|A Chain A, Crystal Structure Of The Apo Form Of E.Coli Malate
Dehydrogenase
pdb|2PWZ|C Chain C, Crystal Structure Of The Apo Form Of E.Coli Malate
Dehydrogenase
pdb|2PWZ|E Chain E, Crystal Structure Of The Apo Form Of E.Coli Malate
Dehydrogenase
pdb|2PWZ|G Chain G, Crystal Structure Of The Apo Form Of E.Coli Malate
Dehydrogenase
pdb|3HHP|A Chain A, Malate Dehydrogenase Open Conformation
pdb|3HHP|B Chain B, Malate Dehydrogenase Open Conformation
pdb|3HHP|C Chain C, Malate Dehydrogenase Open Conformation
pdb|3HHP|D Chain D, Malate Dehydrogenase Open Conformation
Length = 312
Score = 270 bits (690), Expect = 7e-73, Method: Compositional matrix adjust.
Identities = 143/228 (62%), Positives = 169/228 (74%), Gaps = 4/228 (1%)
Query: 48 KVAVLGAAGGIGQPLAMLMKIN-PLVSVLHLYDVV-NTPGVTADISHMDTNAVVRGFLGQ 105
KVAVLGAAGGIGQ LA+L+K P S L LYD+ TPGV D+SH+ T ++GF G+
Sbjct: 2 KVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSGE 61
Query: 106 QQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNP 165
AL G D+V+I AGV RKPGM R DLFN+NAGIVK L + +AK CPKA + +I+NP
Sbjct: 62 DA-TPALEGADVVLISAGVARKPGMDRSDLFNVNAGIVKNLVQQVAKTCPKACIGIITNP 120
Query: 166 VNSTVPIAAEVFKKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGV 225
VN+TV IAAEV KK G YD +L GVT LD++R+NTFVAE+ G P EV+VPV+GGH+GV
Sbjct: 121 VNTTVAIAAEVLKKAGVYDKNKLFGVTTLDIIRSNTFVAELKGKQPGEVEVPVIGGHSGV 180
Query: 226 TILPLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEAKTGAGSATLSM 273
TILPLLSQV P S T E+ LT RIQN GTEVVEAK G GSATLSM
Sbjct: 181 TILPLLSQV-PGVSFTEQEVADLTKRIQNAGTEVVEAKAGGGSATLSM 227
>pdb|1EMD|A Chain A, Crystal Structure Of A Ternary Complex Of Escherichia Coli
Malate Dehydrogenase, Citrate And Nad At 1.9 Angstroms
Resolution
pdb|2CMD|A Chain A, The Crystal Structure Of E.Coli Malate Dehydrogenase: A
Complex Of The Apoenzyme And Citrate At 1.87 Angstroms
Resolution
Length = 312
Score = 269 bits (688), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 143/228 (62%), Positives = 169/228 (74%), Gaps = 4/228 (1%)
Query: 48 KVAVLGAAGGIGQPLAMLMKIN-PLVSVLHLYDVV-NTPGVTADISHMDTNAVVRGFLGQ 105
KVAVLGAAGGIGQ LA+L+K P S L LYD+ TPGV D+SH+ T ++GF G+
Sbjct: 2 KVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSGE 61
Query: 106 QQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNP 165
AL G D+V+I AGV RKPGM R DLFN+NAGIVK L + +AK CPKA + +I+NP
Sbjct: 62 DA-TPALEGADVVLISAGVRRKPGMDRSDLFNVNAGIVKNLVQQVAKTCPKACIGIITNP 120
Query: 166 VNSTVPIAAEVFKKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGV 225
VN+TV IAAEV KK G YD +L GVT LD++R+NTFVAE+ G P EV+VPV+GGH+GV
Sbjct: 121 VNTTVAIAAEVLKKAGVYDKNKLFGVTTLDIIRSNTFVAELKGKQPGEVEVPVIGGHSGV 180
Query: 226 TILPLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEAKTGAGSATLSM 273
TILPLLSQV P S T E+ LT RIQN GTEVVEAK G GSATLSM
Sbjct: 181 TILPLLSQV-PGVSFTEQEVADLTKRIQNAGTEVVEAKAGGGSATLSM 227
>pdb|1IB6|A Chain A, Crystal Structure Of R153c E. Coli Malate Dehydrogenase
pdb|1IB6|B Chain B, Crystal Structure Of R153c E. Coli Malate Dehydrogenase
pdb|1IB6|C Chain C, Crystal Structure Of R153c E. Coli Malate Dehydrogenase
pdb|1IB6|D Chain D, Crystal Structure Of R153c E. Coli Malate Dehydrogenase
pdb|1IE3|A Chain A, Crystal Structure Of R153c E. Coli Malate Dehydrogenase
pdb|1IE3|B Chain B, Crystal Structure Of R153c E. Coli Malate Dehydrogenase
pdb|1IE3|C Chain C, Crystal Structure Of R153c E. Coli Malate Dehydrogenase
pdb|1IE3|D Chain D, Crystal Structure Of R153c E. Coli Malate Dehydrogenase
Length = 312
Score = 265 bits (678), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 142/228 (62%), Positives = 168/228 (73%), Gaps = 4/228 (1%)
Query: 48 KVAVLGAAGGIGQPLAMLMKIN-PLVSVLHLYDVV-NTPGVTADISHMDTNAVVRGFLGQ 105
KVAVLGAAGGIGQ LA+L+K P S L LYD+ TPGV D+SH+ T ++GF G+
Sbjct: 2 KVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSGE 61
Query: 106 QQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNP 165
AL G D+V+I AGV RKPGM R DLFN+NAGIVK L + +AK CPKA + +I+NP
Sbjct: 62 DA-TPALEGADVVLISAGVARKPGMDRSDLFNVNAGIVKNLVQQVAKTCPKACIGIITNP 120
Query: 166 VNSTVPIAAEVFKKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGV 225
VN+TV IAAEV KK G YD +L GVT LD++ +NTFVAE+ G P EV+VPV+GGH+GV
Sbjct: 121 VNTTVAIAAEVLKKAGVYDKNKLFGVTTLDIICSNTFVAELKGKQPGEVEVPVIGGHSGV 180
Query: 226 TILPLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEAKTGAGSATLSM 273
TILPLLSQV P S T E+ LT RIQN GTEVVEAK G GSATLSM
Sbjct: 181 TILPLLSQV-PGVSFTEQEVADLTKRIQNAGTEVVEAKAGGGSATLSM 227
>pdb|4E0B|A Chain A, 2.17 Angstrom Resolution Crystal Structure Of Malate
Dehydrogenase From Vibrio Vulnificus Cmcp6
pdb|4E0B|B Chain B, 2.17 Angstrom Resolution Crystal Structure Of Malate
Dehydrogenase From Vibrio Vulnificus Cmcp6
pdb|4E0B|C Chain C, 2.17 Angstrom Resolution Crystal Structure Of Malate
Dehydrogenase From Vibrio Vulnificus Cmcp6
pdb|4E0B|D Chain D, 2.17 Angstrom Resolution Crystal Structure Of Malate
Dehydrogenase From Vibrio Vulnificus Cmcp6
Length = 313
Score = 260 bits (664), Expect = 6e-70, Method: Compositional matrix adjust.
Identities = 144/241 (59%), Positives = 172/241 (71%), Gaps = 8/241 (3%)
Query: 44 SPGFKVAVLGAAGGIGQPLAMLMKIN-PLVSVLHLYDVVN-TPGVTADISHMDTNAVVRG 101
S KVAV+GAAGGIGQ LA+L+K P S L LYD+ TPGV AD+SH+ T+ ++G
Sbjct: 1 SNAXKVAVIGAAGGIGQALALLLKNRLPAGSDLALYDIAPVTPGVAADLSHIPTHVSIKG 60
Query: 102 FLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNL 161
+ G+ AL G D+V+I AGV RKPG R DLFN+NAGIVK+L E IA CP A + +
Sbjct: 61 YAGEDPTP-ALEGADVVLISAGVARKPGXDRADLFNVNAGIVKSLAERIAVVCPNACIGI 119
Query: 162 ISNPVNSTVPIAAEVFKKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVGG 221
I+NPVN+TVPIAAEV KK G YD ++L GVT LDV+R+ TFVAE+ G DP EV VPV+GG
Sbjct: 120 ITNPVNTTVPIAAEVLKKAGVYDKRKLFGVTTLDVIRSETFVAELKGQDPGEVRVPVIGG 179
Query: 222 HAGVTILPLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEAKTGAGSATLSM----CRHM 277
H+GVTILPLLSQV+ + EI LT RIQN GTEVVEAK G GSATLS CR
Sbjct: 180 HSGVTILPLLSQVE-GVEFSDEEIAALTKRIQNAGTEVVEAKAGGGSATLSXGQAACRFG 238
Query: 278 L 278
L
Sbjct: 239 L 239
>pdb|2HJR|A Chain A, Crystal Structure Of Cryptosporidium Parvum Malate
Dehydrogenase
pdb|2HJR|B Chain B, Crystal Structure Of Cryptosporidium Parvum Malate
Dehydrogenase
pdb|2HJR|C Chain C, Crystal Structure Of Cryptosporidium Parvum Malate
Dehydrogenase
pdb|2HJR|D Chain D, Crystal Structure Of Cryptosporidium Parvum Malate
Dehydrogenase
pdb|2HJR|E Chain E, Crystal Structure Of Cryptosporidium Parvum Malate
Dehydrogenase
pdb|2HJR|F Chain F, Crystal Structure Of Cryptosporidium Parvum Malate
Dehydrogenase
pdb|2HJR|G Chain G, Crystal Structure Of Cryptosporidium Parvum Malate
Dehydrogenase
pdb|2HJR|H Chain H, Crystal Structure Of Cryptosporidium Parvum Malate
Dehydrogenase
pdb|2HJR|I Chain I, Crystal Structure Of Cryptosporidium Parvum Malate
Dehydrogenase
pdb|2HJR|J Chain J, Crystal Structure Of Cryptosporidium Parvum Malate
Dehydrogenase
pdb|2HJR|K Chain K, Crystal Structure Of Cryptosporidium Parvum Malate
Dehydrogenase
pdb|2HJR|L Chain L, Crystal Structure Of Cryptosporidium Parvum Malate
Dehydrogenase
Length = 328
Score = 99.4 bits (246), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 78/234 (33%), Positives = 122/234 (52%), Gaps = 23/234 (9%)
Query: 48 KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISH-MDTNAVVRGFLG 104
K++++GA G IG +A+L+ L V +++D++ G D++H M G
Sbjct: 16 KISIIGA-GQIGSTIALLLGQKDLGDV-YMFDIIEGVPQGKALDLNHCMALIGSPAKIFG 73
Query: 105 QQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISN 164
+ E L D+VII AGVPRKP MTR DL +NA IV ++ E + K CP A V I+N
Sbjct: 74 ENNYE-YLQNSDVVIITAGVPRKPNMTRSDLLTVNAKIVGSVAENVGKYCPNAFVICITN 132
Query: 165 PVNSTVPIAAEVFKKVGTYDPKRLLGVT-MLDVVRANTFVAEVLGLDPREVDVPVVGGHA 223
P+++ V FK+ ++ G++ +LD R ++ LG+ P +V VVGGH
Sbjct: 133 PLDAMV----YYFKEKSGIPANKVCGMSGVLDSARFRCNLSRALGVKPSDVSAIVVGGH- 187
Query: 224 GVTILP----------LLSQVKPSCSLTPTEIDYLTDRIQNGGTEVVE-AKTGA 266
G ++P LLS +T ++I+ + + GG E+VE KTG+
Sbjct: 188 GDEMIPLTSSVTIGGILLSDFVEQGKITHSQINEIIKKTAFGGGEIVELLKTGS 241
>pdb|1GUZ|A Chain A, Structural Basis For Thermophilic Protein Stability:
Structures Of Thermophilic And Mesophilic Malate
Dehydrogenases
pdb|1GUZ|B Chain B, Structural Basis For Thermophilic Protein Stability:
Structures Of Thermophilic And Mesophilic Malate
Dehydrogenases
pdb|1GUZ|C Chain C, Structural Basis For Thermophilic Protein Stability:
Structures Of Thermophilic And Mesophilic Malate
Dehydrogenases
pdb|1GUZ|D Chain D, Structural Basis For Thermophilic Protein Stability:
Structures Of Thermophilic And Mesophilic Malate
Dehydrogenases
Length = 310
Score = 95.1 bits (235), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 81/230 (35%), Positives = 117/230 (50%), Gaps = 28/230 (12%)
Query: 47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISH------MDTNAV 98
K+ V+GA G +G A + L L L DVV G D+ DT
Sbjct: 1 MKITVIGA-GNVGATTAFRLAEKQLARELVLLDVVEGIPQGKALDMYESGPVGLFDTKVT 59
Query: 99 VRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAI 158
G D DIVII AG+PRKPGMTR+DL NAGIVK + + I K I
Sbjct: 60 -----GSNDYADTANS-DIVIITAGLPRKPGMTREDLLMKNAGIVKEVTDNIMKHSKNPI 113
Query: 159 VNLISNPVNSTVPIAAEVFKKVGTYDPK-RLLGVT-MLDVVRANTFVAEVLGLDPREVDV 216
+ ++SNP++ +A + + G PK R++G+ +LD R +F+A LG+ ++++
Sbjct: 114 IIVVSNPLDIMTHVA---WVRSGL--PKERVIGMAGVLDAARFRSFIAMELGVSMQDINA 168
Query: 217 PVVGGHAGVTILPLLSQVK----PSCSLTPTE-IDYLTDRIQNGGTEVVE 261
V+GGH G ++P++ P L P E ID L +R +NGG E+VE
Sbjct: 169 CVLGGH-GDAMVPVVKYTTVAGIPISDLLPAETIDKLVERTRNGGAEIVE 217
>pdb|1GV1|A Chain A, Structural Basis For Thermophilic Protein Stability:
Structures Of Thermophilic And Mesophilic Malate
Dehydrogenases
pdb|1GV1|B Chain B, Structural Basis For Thermophilic Protein Stability:
Structures Of Thermophilic And Mesophilic Malate
Dehydrogenases
pdb|1GV1|C Chain C, Structural Basis For Thermophilic Protein Stability:
Structures Of Thermophilic And Mesophilic Malate
Dehydrogenases
pdb|1GV1|D Chain D, Structural Basis For Thermophilic Protein Stability:
Structures Of Thermophilic And Mesophilic Malate
Dehydrogenases
Length = 310
Score = 94.0 bits (232), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 80/227 (35%), Positives = 117/227 (51%), Gaps = 22/227 (9%)
Query: 47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFL--- 103
K+ V+GA G +G A + L L L DVV + +T V G
Sbjct: 1 MKITVIGA-GNVGATTAFRIADKKLARELVLLDVVEGIPQGKGLDMYETGPV--GLFDTK 57
Query: 104 --GQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNL 161
G D DIVII AG+PRKPGMTR+DL NAGIVK + + I K I+ +
Sbjct: 58 ITGSNDYADTADS-DIVIITAGLPRKPGMTREDLLMKNAGIVKEVTDNIMKHSKNPIIIV 116
Query: 162 ISNPVNSTVPIAAEVFKKVGTYDPK-RLLGVT-MLDVVRANTFVAEVLGLDPREVDVPVV 219
+SNP++ +A + + G PK R++G+ +LD R +F+A LG+ ++++ V+
Sbjct: 117 VSNPLDIMTHVA---WVRSGL--PKERVIGMAGVLDAARFRSFIAMELGVSMQDINACVL 171
Query: 220 GGHAGVTILPLLSQVK----PSCSLTPTE-IDYLTDRIQNGGTEVVE 261
GGH G ++P++ P L P E ID L +R +NGG E+VE
Sbjct: 172 GGH-GDAMVPVVKYTTVAGIPISDLLPAETIDKLVERTRNGGAEIVE 217
>pdb|3TL2|A Chain A, Crystal Structure Of Bacillus Anthracis Str. Ames Malate
Dehydrogenase In Closed Conformation
Length = 315
Score = 94.0 bits (232), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 79/234 (33%), Positives = 129/234 (55%), Gaps = 22/234 (9%)
Query: 48 KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDV--VNTPGVTADISHMDTNAVVRGF--- 102
KV+V+GA G G A L+ L V+ L D+ + P + ++ + V +GF
Sbjct: 10 KVSVIGA-GFTGATTAFLLAQKELADVV-LVDIPQLENPTKGKALDMLEASPV-QGFDAN 66
Query: 103 -LGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNL 161
+G D D+V+I AG+ RKPGM+RDDL N+ I+K++ IAK P AI+ +
Sbjct: 67 IIGTSDYADTADS-DVVVITAGIARKPGMSRDDLVATNSKIMKSITRDIAKHSPNAIIVV 125
Query: 162 ISNPVNSTVPIAAEVFKKVGTYDPKRLLGVT-MLDVVRANTFVAEVLGLDPREVDVPVVG 220
++NPV++ + VFK+ G + +R++G + +LD R TF+A+ L L +++ V+G
Sbjct: 126 LTNPVDA---MTYSVFKEAG-FPKERVIGQSGVLDTARFRTFIAQELNLSVKDITGFVLG 181
Query: 221 GHAGVTILPLLSQVK----PSCSLTPTE-IDYLTDRIQNGGTEVVEAKTGAGSA 269
GH G ++PL+ P +L P E ++ + +R + GG E+V G GSA
Sbjct: 182 GH-GDDMVPLVRYSYAGGIPLETLIPKERLEAIVERTRKGGGEIV-GLLGNGSA 233
>pdb|3P7M|A Chain A, Structure Of Putative Lactate Dehydrogenase From
Francisella Tularensis Subsp. Tularensis Schu S4
pdb|3P7M|B Chain B, Structure Of Putative Lactate Dehydrogenase From
Francisella Tularensis Subsp. Tularensis Schu S4
pdb|3P7M|C Chain C, Structure Of Putative Lactate Dehydrogenase From
Francisella Tularensis Subsp. Tularensis Schu S4
pdb|3P7M|D Chain D, Structure Of Putative Lactate Dehydrogenase From
Francisella Tularensis Subsp. Tularensis Schu S4
Length = 321
Score = 94.0 bits (232), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 79/237 (33%), Positives = 118/237 (49%), Gaps = 29/237 (12%)
Query: 48 KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDT------NAVVRG 101
K+ ++GA G IG LA L I L V+ L+D+ + + T + VRG
Sbjct: 7 KITLVGA-GNIGGTLAHLALIKQLGDVV-LFDIAQGXPNGKALDLLQTCPIEGVDFKVRG 64
Query: 102 FLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNL 161
+ LE++ D+VI+ AGVPRKPG +RDDL IN + +T+ EGI CP A V
Sbjct: 65 TNDYKDLENS----DVVIVTAGVPRKPGXSRDDLLGINIKVXQTVGEGIKHNCPNAFVIC 120
Query: 162 ISNPVNSTVPIAAEVFKKVGTYDPKRLLGVT-MLDVVRANTFVAEVLGLDPREVDVPVVG 220
I+NP++ I +K +++G +LD R TF+A+ L + ++V V G
Sbjct: 121 ITNPLD----IXVNXLQKFSGVPDNKIVGXAGVLDSARFRTFLADELNVSVQQVQAYVXG 176
Query: 221 GHAGVTILPL----------LSQVKPSCSLTPTEIDYLTDRIQNGGTEVVE-AKTGA 266
GH G T +PL L Q+ L +D + R ++GG E+V KTG+
Sbjct: 177 GH-GDTXVPLTKXSNVAGVSLEQLVKEGKLKQERLDAIVSRTRSGGGEIVALLKTGS 232
>pdb|3GVH|A Chain A, Crystal Structure Of LactateMALATE DEHYDROGENASE FROM
Brucella Melitensis
pdb|3GVH|B Chain B, Crystal Structure Of LactateMALATE DEHYDROGENASE FROM
Brucella Melitensis
pdb|3GVH|C Chain C, Crystal Structure Of LactateMALATE DEHYDROGENASE FROM
Brucella Melitensis
pdb|3GVH|D Chain D, Crystal Structure Of LactateMALATE DEHYDROGENASE FROM
Brucella Melitensis
pdb|3GVI|A Chain A, Crystal Structure Of LactateMALATE DEHYDROGENASE FROM
Brucella Melitensis In Complex With Adp
pdb|3GVI|B Chain B, Crystal Structure Of LactateMALATE DEHYDROGENASE FROM
Brucella Melitensis In Complex With Adp
pdb|3GVI|C Chain C, Crystal Structure Of LactateMALATE DEHYDROGENASE FROM
Brucella Melitensis In Complex With Adp
pdb|3GVI|D Chain D, Crystal Structure Of LactateMALATE DEHYDROGENASE FROM
Brucella Melitensis In Complex With Adp
pdb|3GVI|E Chain E, Crystal Structure Of LactateMALATE DEHYDROGENASE FROM
Brucella Melitensis In Complex With Adp
pdb|3GVI|F Chain F, Crystal Structure Of LactateMALATE DEHYDROGENASE FROM
Brucella Melitensis In Complex With Adp
Length = 324
Score = 90.5 bits (223), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 76/226 (33%), Positives = 118/226 (52%), Gaps = 20/226 (8%)
Query: 48 KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-TP-GVTADISHMD-TNAVVRGFLG 104
K+A++G+ G IG LA L + L V+ L+D+ TP G DI+ + F G
Sbjct: 9 KIALIGS-GMIGGTLAHLAGLKELGDVV-LFDIAEGTPQGKGLDIAESSPVDGFDAKFTG 66
Query: 105 QQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISN 164
A+ G D+VI+ AGVPRKPGM+RDDL IN +++ + GI K P+A V I+N
Sbjct: 67 ANDYA-AIEGADVVIVTAGVPRKPGMSRDDLLGINLKVMEQVGAGIKKYAPEAFVICITN 125
Query: 165 PVNSTVPIAAEVFKKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVGGH-- 222
P+++ V A + F + + + GV LD R F++E + +V V V+GGH
Sbjct: 126 PLDAMV-WALQKFSGLPAHKVVGMAGV--LDSARFRYFLSEEFNVSVEDVTVFVLGGHGD 182
Query: 223 --------AGVTILPLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVV 260
+ V +PL VK + + ++D + R ++GG E+V
Sbjct: 183 SMVPLARYSTVAGIPLPDLVKMGWT-SQDKLDKIIQRTRDGGAEIV 227
>pdb|1PZE|A Chain A, T.gondii Ldh1 Apo Form
pdb|1PZF|A Chain A, T.gondii Ldh1 Ternary Complex With Apad+ And Oxalate
pdb|1PZF|B Chain B, T.gondii Ldh1 Ternary Complex With Apad+ And Oxalate
pdb|1PZF|C Chain C, T.gondii Ldh1 Ternary Complex With Apad+ And Oxalate
pdb|1PZF|D Chain D, T.gondii Ldh1 Ternary Complex With Apad+ And Oxalate
pdb|1PZH|A Chain A, T.Gondii Ldh1 Ternary Complex With Nad And Oxalate
pdb|1PZH|B Chain B, T.Gondii Ldh1 Ternary Complex With Nad And Oxalate
pdb|1PZH|C Chain C, T.Gondii Ldh1 Ternary Complex With Nad And Oxalate
pdb|1PZH|D Chain D, T.Gondii Ldh1 Ternary Complex With Nad And Oxalate
Length = 331
Score = 89.0 bits (219), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 67/200 (33%), Positives = 105/200 (52%), Gaps = 24/200 (12%)
Query: 48 KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHM----DTNAVVRG 101
KVA++G+ G IG + L + L V+ LYDVV G D+SH+ DTN VR
Sbjct: 11 KVAMIGS-GMIGGTMGYLCALRELADVV-LYDVVKGMPEGKALDLSHVTSVVDTNVSVRA 68
Query: 102 FLGQQQLEDALTGMDIVIIPAGVPRKPG-----MTRDDLFNINAGIVKTLCEGIAKCCPK 156
+ E ALTG D VI+ AG+ + PG +R+DL N+ I++ + + I K CPK
Sbjct: 69 ---EYSYEAALTGADCVIVTAGLTKVPGKPDSEWSRNDLLPFNSKIIREIGQNIKKYCPK 125
Query: 157 AIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLG--VTMLDVVRANTFVAEVLGLDPREV 214
+ +++NP++ V + E + P ++ MLD R +VA+ L + PR+V
Sbjct: 126 TFIIVVTNPLDCMVKVMCE-----ASGVPTNMICGMACMLDSGRFRRYVADALSVSPRDV 180
Query: 215 DVPVVGGHAGVTILPLLSQV 234
V+G H G ++PL+ +
Sbjct: 181 QATVIGTH-GDCMVPLVRYI 199
>pdb|3OM9|A Chain A, T. Gondii Bradyzoite-Specific Ldh (Ldh1) In Complex With
Nad And Oxq
pdb|3OM9|B Chain B, T. Gondii Bradyzoite-Specific Ldh (Ldh1) In Complex With
Nad And Oxq
pdb|3OM9|C Chain C, T. Gondii Bradyzoite-Specific Ldh (Ldh1) In Complex With
Nad And Oxq
pdb|3OM9|D Chain D, T. Gondii Bradyzoite-Specific Ldh (Ldh1) In Complex With
Nad And Oxq
Length = 329
Score = 89.0 bits (219), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 67/200 (33%), Positives = 105/200 (52%), Gaps = 24/200 (12%)
Query: 48 KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHM----DTNAVVRG 101
KVA++G+ G IG + L + L V+ LYDVV G D+SH+ DTN VR
Sbjct: 9 KVAMIGS-GMIGGTMGYLCALRELADVV-LYDVVKGMPEGKALDLSHVTSVVDTNVSVRA 66
Query: 102 FLGQQQLEDALTGMDIVIIPAGVPRKPG-----MTRDDLFNINAGIVKTLCEGIAKCCPK 156
+ E ALTG D VI+ AG+ + PG +R+DL N+ I++ + + I K CPK
Sbjct: 67 ---EYSYEAALTGADCVIVTAGLTKVPGKPDSEWSRNDLLPFNSKIIREIGQNIKKYCPK 123
Query: 157 AIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLG--VTMLDVVRANTFVAEVLGLDPREV 214
+ +++NP++ V + E + P ++ MLD R +VA+ L + PR+V
Sbjct: 124 TFIIVVTNPLDCMVKVMCE-----ASGVPTNMICGMACMLDSGRFRRYVADALSVSPRDV 178
Query: 215 DVPVVGGHAGVTILPLLSQV 234
V+G H G ++PL+ +
Sbjct: 179 QATVIGTH-GDCMVPLVRYI 197
>pdb|1PZG|A Chain A, T.Gondii Ldh1 Complexed With Apad And Sulfate At 1.6
Angstroms
pdb|1PZG|B Chain B, T.Gondii Ldh1 Complexed With Apad And Sulfate At 1.6
Angstroms
pdb|1PZG|C Chain C, T.Gondii Ldh1 Complexed With Apad And Sulfate At 1.6
Angstroms
pdb|1PZG|D Chain D, T.Gondii Ldh1 Complexed With Apad And Sulfate At 1.6
Angstroms
Length = 331
Score = 88.6 bits (218), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 67/200 (33%), Positives = 105/200 (52%), Gaps = 24/200 (12%)
Query: 48 KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHM----DTNAVVRG 101
KVA++G+ G IG + L + L V+ LYDVV G D+SH+ DTN VR
Sbjct: 11 KVAMIGS-GMIGGTMGYLCALRELADVV-LYDVVKGMPEGKALDLSHVTSVVDTNVSVRA 68
Query: 102 FLGQQQLEDALTGMDIVIIPAGVPRKPG-----MTRDDLFNINAGIVKTLCEGIAKCCPK 156
+ E ALTG D VI+ AG+ + PG +R+DL N+ I++ + + I K CPK
Sbjct: 69 ---EYSYEAALTGADCVIVTAGLTKVPGKPDSEWSRNDLLPFNSKIIREIGQNIKKYCPK 125
Query: 157 AIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLG--VTMLDVVRANTFVAEVLGLDPREV 214
+ +++NP++ V + E + P ++ MLD R +VA+ L + PR+V
Sbjct: 126 TFIIVVTNPLDCMVKVMXE-----ASGVPTNMICGMACMLDSGRFRRYVADALSVSPRDV 180
Query: 215 DVPVVGGHAGVTILPLLSQV 234
V+G H G ++PL+ +
Sbjct: 181 QATVIGTH-GDCMVPLVRYI 199
>pdb|1GV0|A Chain A, Structural Basis For Thermophilic Protein Stability:
Structures Of Thermophilic And Mesophilic Malate
Dehydrogenases
pdb|1GV0|B Chain B, Structural Basis For Thermophilic Protein Stability:
Structures Of Thermophilic And Mesophilic Malate
Dehydrogenases
Length = 310
Score = 84.0 bits (206), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 76/229 (33%), Positives = 114/229 (49%), Gaps = 28/229 (12%)
Query: 47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISH------MDTNAV 98
K+ V+GA G +G A + L L L DVV G D+ DT
Sbjct: 1 MKITVIGA-GNVGATTAFRLAEKQLARELVLLDVVEGIPQGKALDMYESGPVGLFDTKVT 59
Query: 99 VRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAI 158
G D DIV+I AG+PRKPGMTR+DL ++NAGIV+ + I + I
Sbjct: 60 -----GSNDYADTANS-DIVVITAGLPRKPGMTREDLLSMNAGIVREVTGRIMEHSKNPI 113
Query: 159 VNLISNPVNSTVPIAAEVFKKVGTYDPK-RLLGVT-MLDVVRANTFVAEVLGLDPREVDV 216
+ ++SNP++ +A ++K G PK R++G+ +LD R +F+A LG+ ++V
Sbjct: 114 IVVVSNPLDIMTHVA---WQKSGL--PKERVIGMAGVLDSARFRSFIAMELGVSMQDVTA 168
Query: 217 PVVGGHAGVTILPLLSQVK----PSCSLTPTE-IDYLTDRIQNGGTEVV 260
V+GGH G ++P++ P L E I L +R + GG E+V
Sbjct: 169 CVLGGH-GDAMVPVVKYTTVAGIPVADLISAERIAELVERTRTGGAEIV 216
>pdb|1UXI|A Chain A, Large Improvement In The Thermal Stability Of A Tetrameric
Malate Dehydrogenase By Single Point Mutations At The
Dimer-Dimer Interface
pdb|1UXI|B Chain B, Large Improvement In The Thermal Stability Of A Tetrameric
Malate Dehydrogenase By Single Point Mutations At The
Dimer-Dimer Interface
pdb|1UXJ|A Chain A, Large Improvement In The Thermal Stability Of A Tetrameric
Malate Dehydrogenase By Single Point Mutations At The
Dimer-dimer Interface
pdb|1UXJ|C Chain C, Large Improvement In The Thermal Stability Of A Tetrameric
Malate Dehydrogenase By Single Point Mutations At The
Dimer-dimer Interface
Length = 309
Score = 84.0 bits (206), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 50/158 (31%), Positives = 90/158 (56%), Gaps = 12/158 (7%)
Query: 116 DIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAE 175
D++++ +G PRKPGM+R+DL +NA I + A P A++ +++NP+++ +AAE
Sbjct: 72 DVIVVTSGAPRKPGMSREDLIKVNADITRACISQAAPLSPNAVIIMVNNPLDAMTYLAAE 131
Query: 176 VFKKVGTYDPKRLLG-VTMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPL---- 230
V + +R++G +LD R TF+A G+ ++V ++GGH G ++PL
Sbjct: 132 ----VSGFPKERVIGQAGVLDAARYRTFIAMEAGVSVKDVQAMLMGGH-GDEMVPLPRFS 186
Query: 231 -LSQVKPSCSLTPTEIDYLTDRIQNGGTEVVE-AKTGA 266
+S + S + P + + +R + GG E+V KTG+
Sbjct: 187 TISGIPVSEFIAPDRLAQIVERTRKGGGEIVNLLKTGS 224
>pdb|1UXH|A Chain A, Large Improvement In The Thermal Stability Of A Tetrameric
Malate Dehydrogenase By Single Point Mutations At The
Dimer-Dimer Interface
pdb|1UXH|B Chain B, Large Improvement In The Thermal Stability Of A Tetrameric
Malate Dehydrogenase By Single Point Mutations At The
Dimer-Dimer Interface
pdb|1UXK|A Chain A, Large Improvement In The Thermal Stability Of A Tetrameric
Malate Dehydrogenase By Single Point Mutations At The
Dimer-dimer Interface
pdb|1UXK|C Chain C, Large Improvement In The Thermal Stability Of A Tetrameric
Malate Dehydrogenase By Single Point Mutations At The
Dimer-dimer Interface
Length = 309
Score = 83.6 bits (205), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 50/158 (31%), Positives = 90/158 (56%), Gaps = 12/158 (7%)
Query: 116 DIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAE 175
D++++ +G PRKPGM+R+DL +NA I + A P A++ +++NP+++ +AAE
Sbjct: 72 DVIVVTSGAPRKPGMSREDLIKVNADITRACISQAAPLSPNAVIIMVNNPLDAMTYLAAE 131
Query: 176 VFKKVGTYDPKRLLG-VTMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPL---- 230
V + +R++G +LD R TF+A G+ ++V ++GGH G ++PL
Sbjct: 132 ----VSGFPKERVIGQAGVLDAARYRTFIAMEAGVSVQDVQAMLMGGH-GDEMVPLPRFS 186
Query: 231 -LSQVKPSCSLTPTEIDYLTDRIQNGGTEVVE-AKTGA 266
+S + S + P + + +R + GG E+V KTG+
Sbjct: 187 TISGIPVSEFIAPDRLAQIVERTRKGGGEIVNLLKTGS 224
>pdb|1GUY|A Chain A, Structural Basis For Thermophilic Protein Stability:
Structures Of Thermophilic And Mesophilic Malate
Dehydrogenases
pdb|1GUY|C Chain C, Structural Basis For Thermophilic Protein Stability:
Structures Of Thermophilic And Mesophilic Malate
Dehydrogenases
pdb|1UXG|A Chain A, Large Improvement In The Thermal Stability Of A Tetrameric
Malate Dehydrogenase By Single Point Mutations At The
Dimer-Dimer Interface.
pdb|1UXG|B Chain B, Large Improvement In The Thermal Stability Of A Tetrameric
Malate Dehydrogenase By Single Point Mutations At The
Dimer-Dimer Interface
Length = 309
Score = 83.2 bits (204), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 50/158 (31%), Positives = 89/158 (56%), Gaps = 12/158 (7%)
Query: 116 DIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAE 175
D++++ +G PRKPGM+R+DL +NA I + A P A++ +++NP+++ +AAE
Sbjct: 72 DVIVVTSGAPRKPGMSREDLIKVNADITRACISQAAPLSPNAVIIMVNNPLDAMTYLAAE 131
Query: 176 VFKKVGTYDPKRLLG-VTMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPL---- 230
V + +R++G +LD R TF+A G+ +V ++GGH G ++PL
Sbjct: 132 ----VSGFPKERVIGQAGVLDAARYRTFIAMEAGVSVEDVQAMLMGGH-GDEMVPLPRFS 186
Query: 231 -LSQVKPSCSLTPTEIDYLTDRIQNGGTEVVE-AKTGA 266
+S + S + P + + +R + GG E+V KTG+
Sbjct: 187 TISGIPVSEFIAPDRLAQIVERTRKGGGEIVNLLKTGS 224
>pdb|1UR5|A Chain A, Stabilization Of A Tetrameric Malate Dehydrogenase By
Introduction Of A Disulfide Bridge At The DimerDIMER
Interface
pdb|1UR5|C Chain C, Stabilization Of A Tetrameric Malate Dehydrogenase By
Introduction Of A Disulfide Bridge At The DimerDIMER
Interface
Length = 309
Score = 82.8 bits (203), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 50/158 (31%), Positives = 89/158 (56%), Gaps = 12/158 (7%)
Query: 116 DIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAE 175
D++++ +G PRKPGM+R+DL +NA I + A P A++ +++NP+++ +AAE
Sbjct: 72 DVIVVTSGAPRKPGMSREDLIKVNADITRACISQAAPLSPNAVIIMVNNPLDAMTYLAAE 131
Query: 176 VFKKVGTYDPKRLLG-VTMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPL---- 230
V + +R++G +LD R TF+A G+ +V ++GGH G ++PL
Sbjct: 132 ----VSGFPKERVIGQAGVLDAARYRTFIAMEAGVSVEDVQAMLMGGH-GDEMVPLPRFS 186
Query: 231 -LSQVKPSCSLTPTEIDYLTDRIQNGGTEVVE-AKTGA 266
+S + S + P + + +R + GG E+V KTG+
Sbjct: 187 CISGIPVSEFIAPDRLAQIVERTRKGGGEIVNLLKTGS 224
>pdb|1A5Z|A Chain A, Lactate Dehydrogenase From Thermotoga Maritima (tmldh)
Length = 319
Score = 82.8 bits (203), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 54/165 (32%), Positives = 85/165 (51%), Gaps = 19/165 (11%)
Query: 112 LTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVP 171
L G D+VI+ AGVP+KPG TR L NA ++K + ++K P +IV +++NPV+
Sbjct: 65 LKGSDVVIVAAGVPQKPGETRLQLLGRNARVMKEIARNVSKYAPDSIVIVVTNPVD---- 120
Query: 172 IAAEVFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVDVPVVGGH-------- 222
+ F K DP+++ G T+LD R T +A+ G PR V V V+G H
Sbjct: 121 VLTYFFLKESGMDPRKVFGSGTVLDTARLRTLIAQHCGFSPRSVHVYVIGEHGDSEVPVW 180
Query: 223 AGVTI--LPL--LSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEAK 263
+G I +PL + QV C ++ ++ + E++E K
Sbjct: 181 SGAMIGGIPLQNMCQVCQKCD--SKILENFAEKTKRAAYEIIERK 223
>pdb|2FM3|A Chain A, Crystal Structure Of The Lactate Dehydrogenase From
Cryptosporidium Parvum Complexed With Substrate (Pyruvic
Acid) And Cofactor (B- Nicotinamide Adenine
Dinucleotide)
pdb|2FM3|B Chain B, Crystal Structure Of The Lactate Dehydrogenase From
Cryptosporidium Parvum Complexed With Substrate (Pyruvic
Acid) And Cofactor (B- Nicotinamide Adenine
Dinucleotide)
pdb|2FN7|A Chain A, Crystal Structure Of The Lactate Dehydrogenase From
Cryptosporidium Parvum Complexed With Substrate (Lactic
Acid) And Cofactor (B- Nicotinamide Adenine
Dinucleotide)
pdb|2FN7|B Chain B, Crystal Structure Of The Lactate Dehydrogenase From
Cryptosporidium Parvum Complexed With Substrate (Lactic
Acid) And Cofactor (B- Nicotinamide Adenine
Dinucleotide)
pdb|2FNZ|A Chain A, Crystal Structure Of The Lactate Dehydrogenase From
Cryptosporidium Parvum Complexed With Cofactor
(B-Nicotinamide Adenine Dinucleotide) And Inhibitor
(Oxamic Acid)
pdb|2FNZ|B Chain B, Crystal Structure Of The Lactate Dehydrogenase From
Cryptosporidium Parvum Complexed With Cofactor
(B-Nicotinamide Adenine Dinucleotide) And Inhibitor
(Oxamic Acid)
pdb|2FRM|A Chain A, Crystal Structure Of The Lactate Dehydrogenase From
Cryptosporidium Parvum
pdb|2FRM|B Chain B, Crystal Structure Of The Lactate Dehydrogenase From
Cryptosporidium Parvum
pdb|2FRM|C Chain C, Crystal Structure Of The Lactate Dehydrogenase From
Cryptosporidium Parvum
pdb|2FRM|D Chain D, Crystal Structure Of The Lactate Dehydrogenase From
Cryptosporidium Parvum
Length = 321
Score = 79.7 bits (195), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 62/191 (32%), Positives = 101/191 (52%), Gaps = 12/191 (6%)
Query: 48 KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISH-MDTNAVVRGFLG 104
K+AV+G+ G IG +A ++ + L V+ L+D+ G DI+H M +G
Sbjct: 6 KIAVIGS-GQIGGNIAYIVGKDNLADVV-LFDIAEGIPQGKALDITHSMVMFGSTSKVIG 63
Query: 105 QQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISN 164
D ++G D+VII A +P +P R +L NA I+ ++ EG+ K CP A V I+N
Sbjct: 64 TNDYAD-ISGSDVVIITASIPGRPKDDRSELLFGNARILDSVAEGVKKYCPNAFVICITN 122
Query: 165 PVNSTVPIAAEVFKKVGTYDPKRLLGVT-MLDVVRANTFVAEVLGLDPREVDVPVVGGHA 223
P++ + F+KV ++ G+ +LD R TF+A+ G++ +V V+GGH
Sbjct: 123 PLD----VMVSHFQKVSGLPHNKVCGMAGVLDSSRFRTFIAQHFGVNASDVSANVIGGH- 177
Query: 224 GVTILPLLSQV 234
G ++P S V
Sbjct: 178 GDGMVPATSSV 188
>pdb|3CZM|A Chain A, T. Gondii Bradyzoite-Specific Ldh (Ldh2) In Complex With
Nad And Oxq
pdb|3CZM|B Chain B, T. Gondii Bradyzoite-Specific Ldh (Ldh2) In Complex With
Nad And Oxq
Length = 326
Score = 79.3 bits (194), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 74/248 (29%), Positives = 118/248 (47%), Gaps = 36/248 (14%)
Query: 48 KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHM----DTNAVVRG 101
K+A++G+ G IG + L + L V+ L+DVV G D S DTN V
Sbjct: 10 KIAMIGS-GMIGGTMGYLCVLRELADVV-LFDVVTGMPEGKALDDSQATSIADTNVSV-- 65
Query: 102 FLGQQQLEDALTGMDIVIIPAGVPRKPG-----MTRDDLFNINAGIVKTLCEGIAKCCPK 156
Q E + G D+VII AG+ + PG +R+DL NA I++ + +G+ K CP
Sbjct: 66 -TSANQYEK-IAGSDVVIITAGLTKVPGKSDKEWSRNDLLPFNAKIIREVAQGVKKYCPL 123
Query: 157 AIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLG--VTMLDVVRANTFVAEVLGLDPREV 214
A V +++NP++ V E + PK ++ +LD R F+A+ L + PR++
Sbjct: 124 AFVIVVTNPLDCMVKCFHE-----ASGLPKNMVCGMANVLDSARFRRFIADQLEISPRDI 178
Query: 215 DVPVVGGHAGVTILPL----------LSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEAKT 264
V+G H G +LPL L + +T ++ + +R + G E+V
Sbjct: 179 QATVIGTH-GDHMLPLARYVTVNGFPLREFIKKGKMTEAKLAEIVERTKKAGGEIVRL-L 236
Query: 265 GAGSATLS 272
G GSA +
Sbjct: 237 GQGSAYYA 244
>pdb|1SOV|A Chain A, Toxoplasma Gondii Bradyzoite-specific Ldh (ldh2) Apo Form
pdb|1SOV|B Chain B, Toxoplasma Gondii Bradyzoite-specific Ldh (ldh2) Apo Form
pdb|1SOW|A Chain A, T. Gondii Bradyzoite-Specific Ldh (Ldh2) In Complex With
Nad And Oxalate
pdb|1SOW|B Chain B, T. Gondii Bradyzoite-Specific Ldh (Ldh2) In Complex With
Nad And Oxalate
Length = 328
Score = 79.3 bits (194), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 73/247 (29%), Positives = 118/247 (47%), Gaps = 34/247 (13%)
Query: 48 KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHM----DTNAVVRG 101
K+A++G+ G IG + L + L V+ L+DVV G D S DTN V
Sbjct: 10 KIAMIGS-GMIGGTMGYLCVLRELADVV-LFDVVTGMPEGKALDDSQATSIADTNVSV-- 65
Query: 102 FLGQQQLEDALTGMDIVIIPAGVPRKPG-----MTRDDLFNINAGIVKTLCEGIAKCCPK 156
Q E + G D+VII AG+ + PG +R+DL NA I++ + +G+ K CP
Sbjct: 66 -TSANQYEK-IAGSDVVIITAGLTKVPGKSDKEWSRNDLLPFNAKIIREVAQGVKKYCPL 123
Query: 157 AIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVD 215
A V +++NP++ V + F + + G+ +LD R F+A+ L + PR++
Sbjct: 124 AFVIVVTNPLDCMV----KCFHEASGLPKNMVCGMANVLDSARFRRFIADQLEISPRDIQ 179
Query: 216 VPVVGGHAGVTILPL----------LSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEAKTG 265
V+G H G +LPL L + +T ++ + +R + G E+V G
Sbjct: 180 ATVIGTH-GDHMLPLARYVTVNGFPLREFIKKGKMTEAKLAEIVERTKKAGGEIVRL-LG 237
Query: 266 AGSATLS 272
GSA +
Sbjct: 238 QGSAYYA 244
>pdb|2EWD|A Chain A, Crystal Structure Of The Lactate Dehydrogenase From
Cryptosporidium Parvum Complexed With Substrate (Pyruvic
Acid) And Cofactor Analog (3-Acetylpyridine Adenine
Dinucleotide).
pdb|2EWD|B Chain B, Crystal Structure Of The Lactate Dehydrogenase From
Cryptosporidium Parvum Complexed With Substrate (Pyruvic
Acid) And Cofactor Analog (3-Acetylpyridine Adenine
Dinucleotide)
Length = 317
Score = 79.3 bits (194), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 62/191 (32%), Positives = 101/191 (52%), Gaps = 12/191 (6%)
Query: 48 KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISH-MDTNAVVRGFLG 104
K+AV+G+ G IG +A ++ + L V+ L+D+ G DI+H M +G
Sbjct: 6 KIAVIGS-GQIGGNIAYIVGKDNLADVV-LFDIAEGIPQGKALDITHSMVMFGSTSKVIG 63
Query: 105 QQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISN 164
D ++G D+VII A +P +P R +L NA I+ ++ EG+ K CP A V I+N
Sbjct: 64 TDDYAD-ISGSDVVIITASIPGRPKDDRSELLFGNARILDSVAEGVKKYCPNAFVICITN 122
Query: 165 PVNSTVPIAAEVFKKVGTYDPKRLLGVT-MLDVVRANTFVAEVLGLDPREVDVPVVGGHA 223
P++ + F+KV ++ G+ +LD R TF+A+ G++ +V V+GGH
Sbjct: 123 PLD----VMVSHFQKVSGLPHNKVCGMAGVLDSSRFRTFIAQHFGVNASDVSANVIGGH- 177
Query: 224 GVTILPLLSQV 234
G ++P S V
Sbjct: 178 GDGMVPATSSV 188
>pdb|1HYG|A Chain A, Crystal Structure Of Mj0490 Gene Product, The Family Of
LactateMALATE DEHYDROGENASE
pdb|1HYG|B Chain B, Crystal Structure Of Mj0490 Gene Product, The Family Of
LactateMALATE DEHYDROGENASE
pdb|1HYE|A Chain A, Crystal Structure Of The Mj0490 Gene Product, The Family
Of LactateMALATE DEHYDROGENASE, DIMERIC STRUCTURE
Length = 313
Score = 78.6 bits (192), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 70/250 (28%), Positives = 122/250 (48%), Gaps = 32/250 (12%)
Query: 48 KVAVLGAAGGIGQPLAMLMKINPLVSVLHL----YDVVNTPGVTADI------SHMDTNA 97
KV ++GA+G +G A+L+ P + L L + + G+ DI + D N
Sbjct: 2 KVTIIGASGRVGSATALLLAKEPFMKDLVLIGREHSINKLEGLREDIYDALAGTRSDANI 61
Query: 98 VVRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKA 157
V + ++++ D+VII +GVPRK GM+R DL NA IV + IA+ C
Sbjct: 62 YVESDENLRIIDES----DVVIITSGVPRKEGMSRMDLAKTNAKIVGKYAKKIAEICDTK 117
Query: 158 IVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVDV 216
I +I+NPV+ + A V K ++ ++ G+ T LD +R +A+ G+ EV
Sbjct: 118 IF-VITNPVD-VMTYKALVDSK---FERNQVFGLGTHLDSLRFKVAIAKFFGVHIDEVRT 172
Query: 217 PVVGGHAGVTILPLLSQ-------VKPSCSLTPTEIDYLTDRIQNGGTEVVEAKTGA--- 266
++G H G +++PLLS ++ ID + + ++ G +++ K G+
Sbjct: 173 RIIGEH-GDSMVPLLSATSIGGIPIQKFERFKELPIDEIIEDVKTKGEQIIRLKGGSEFG 231
Query: 267 -GSATLSMCR 275
+A L++ R
Sbjct: 232 PAAAILNVVR 241
>pdb|2D4A|A Chain A, Structure Of The Malate Dehydrogenase From Aeropyrum
Pernix
pdb|2D4A|B Chain B, Structure Of The Malate Dehydrogenase From Aeropyrum
Pernix
pdb|2D4A|C Chain C, Structure Of The Malate Dehydrogenase From Aeropyrum
Pernix
pdb|2D4A|D Chain D, Structure Of The Malate Dehydrogenase From Aeropyrum
Pernix
Length = 308
Score = 75.1 bits (183), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 63/222 (28%), Positives = 109/222 (49%), Gaps = 13/222 (5%)
Query: 49 VAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP-GVTADISHMDTN-AVVRGFLGQQ 106
+ +LGA G +G A+++ + +L + P G D++H V G
Sbjct: 2 ITILGA-GKVGMATAVMLMMRGYDDLLLIARTPGKPQGEALDLAHAAAELGVDIRISGSN 60
Query: 107 QLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPV 166
ED + G DIV++ AG+ RKPGMTR+ L NA + L E I AIV + +NPV
Sbjct: 61 SYED-MRGSDIVLVTAGIGRKPGMTREQLLEANANTMADLAEKIKAYAKDAIVVITTNPV 119
Query: 167 NSTVPIAAEVFKKVGTYDPKRLLGVT-MLDVVRANTFVAEVLGLDPREVDVPVVGGHAGV 225
++ + ++KK G + +R++G + +LD R ++++ LG+ + V+ V+G H
Sbjct: 120 DAMTYV---MYKKTG-FPRERVIGFSGILDSARMAYYISQKLGVSFKSVNAIVLGMHGQK 175
Query: 226 TI-LPLLSQVKP---SCSLTPTEIDYLTDRIQNGGTEVVEAK 263
+P LS V ++ EI+ + N G ++ E +
Sbjct: 176 MFPVPRLSSVGGVPLEHLMSKEEIEEVVSETVNAGAKITELR 217
>pdb|1T24|A Chain A, Plasmodium Falciparum Lactate Dehydrogenase Complexed With
Nad+ And 4- Hydroxy-1,2,5-Oxadiazole-3-Carboxylic Acid
pdb|1T25|A Chain A, Plasmodium Falciparum Lactate Dehydrogenase Complexed With
Nadh And 3- Hydroxyisoxazole-4-Carboxylic Acid
pdb|1T26|A Chain A, Plasmodium Falciparum Lactate Dehydrogenase Complexed With
Nadh And 4- Hydroxy-1,2,5-Thiadiazole-3-Carboxylic Acid
pdb|1T2C|A Chain A, Plasmodium Falciparum Lactate Dehydrogenase Complexed With
Nadh
pdb|1T2D|A Chain A, Plasmodium Falciparum Lactate Dehydrogenase Complexed With
Nad+ And Oxalate
pdb|2X8L|A Chain A, Plasmodium Falciparum Lactate Dehydrogenase Apo Structure
pdb|4B7U|A Chain A, Plasmodium Falciparum L-Lactate Dehydrogenase Complexed
With Bicine
pdb|4B7U|B Chain B, Plasmodium Falciparum L-Lactate Dehydrogenase Complexed
With Bicine
pdb|4B7U|C Chain C, Plasmodium Falciparum L-Lactate Dehydrogenase Complexed
With Bicine
pdb|4B7U|D Chain D, Plasmodium Falciparum L-Lactate Dehydrogenase Complexed
With Bicine
Length = 322
Score = 73.6 bits (179), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 65/235 (27%), Positives = 112/235 (47%), Gaps = 25/235 (10%)
Query: 44 SPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVV-NTP-GVTADISHMDTNAVVRG 101
+P K+ ++G+ G IG +A L+ L V+ L+D+V N P G D SH + A
Sbjct: 2 APKAKIVLVGS-GMIGGVMATLIVQKNLGDVV-LFDIVKNMPHGKALDTSHTNVMAYSNC 59
Query: 102 FLGQQQLEDALTGMDIVIIPAGVPRKPG-----MTRDDLFNINAGIVKTLCEGIAKCCPK 156
+ D L G D+VI+ AG + PG RDDL +N I+ + I K CP
Sbjct: 60 KVSGSNTYDDLAGADVVIVTAGFTKAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKKNCPN 119
Query: 157 AIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVD 215
A + +++NPV+ V ++ + +++G+ +LD R ++++ L + PR+V+
Sbjct: 120 AFIIVVTNPVDVMV----QLLHQHSGVPKNKIIGLGGVLDTSRLKYYISQKLNVCPRDVN 175
Query: 216 VPVVGGHAGVTIL----------PLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVV 260
+VG H +L PL + ++ E++ + DR N E+V
Sbjct: 176 AHIVGAHGNKMVLLKRYITVGGIPLQEFINNKL-ISDAELEAIFDRTVNTALEIV 229
>pdb|1XIV|A Chain A, Plasmodium Falciparum Lactate Dehydrogenase Complexed With
2-({4-
Chloro-[hydroxy(Methoxy)methyl]cyclohexyl}amino)ethane-
1,1,2-Triol
Length = 323
Score = 73.6 bits (179), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 65/235 (27%), Positives = 112/235 (47%), Gaps = 25/235 (10%)
Query: 44 SPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVV-NTP-GVTADISHMDTNAVVRG 101
+P K+ ++G+ G IG +A L+ L V+ L+D+V N P G D SH + A
Sbjct: 1 APKAKIVLVGS-GMIGGVMATLIVQKNLGDVV-LFDIVKNMPHGKALDTSHTNVMAYSNC 58
Query: 102 FLGQQQLEDALTGMDIVIIPAGVPRKPG-----MTRDDLFNINAGIVKTLCEGIAKCCPK 156
+ D L G D+VI+ AG + PG RDDL +N I+ + I K CP
Sbjct: 59 KVSGSNTYDDLAGADVVIVTAGFTKAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKKNCPN 118
Query: 157 AIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVD 215
A + +++NPV+ V ++ + +++G+ +LD R ++++ L + PR+V+
Sbjct: 119 AFIIVVTNPVDVMV----QLLHQHSGVPKNKIIGLGGVLDTSRLKYYISQKLNVCPRDVN 174
Query: 216 VPVVGGHAGVTIL----------PLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVV 260
+VG H +L PL + ++ E++ + DR N E+V
Sbjct: 175 AHIVGAHGNKMVLLKRYITVGGIPLQEFINNKL-ISDAELEAIFDRTVNTALEIV 228
>pdb|1U4O|A Chain A, Plasmodium Falciparum Lactate Dehydrogenase Complexed With
2,6- Naphthalenedicarboxylic Acid
pdb|1U4S|A Chain A, Plasmodium Falciparum Lactate Dehydrogenase Complexed With
2,6- Naphthalenedisulphonic Acid
pdb|1U5A|A Chain A, Plasmodium Falciparum Lactate Dehydrogenase Complexed With
3,5- Dihydroxy-2-Naphthoic Acid
pdb|1U5C|A Chain A, Plasmodium Falciparum Lactate Dehydrogenase Complexed With
3,7- Dihydroxynaphthalene-2-Carboxylic Acid And Nad+
pdb|2A94|A Chain A, Structure Of Plasmodium Falciparum Lactate Dehydrogenase
Complexed To Apadh
Length = 321
Score = 73.6 bits (179), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 65/235 (27%), Positives = 112/235 (47%), Gaps = 25/235 (10%)
Query: 44 SPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVV-NTP-GVTADISHMDTNAVVRG 101
+P K+ ++G+ G IG +A L+ L V+ L+D+V N P G D SH + A
Sbjct: 1 APKAKIVLVGS-GMIGGVMATLIVQKNLGDVV-LFDIVKNMPHGKALDTSHTNVMAYSNC 58
Query: 102 FLGQQQLEDALTGMDIVIIPAGVPRKPG-----MTRDDLFNINAGIVKTLCEGIAKCCPK 156
+ D L G D+VI+ AG + PG RDDL +N I+ + I K CP
Sbjct: 59 KVSGSNTYDDLAGADVVIVTAGFTKAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKKNCPN 118
Query: 157 AIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVD 215
A + +++NPV+ V ++ + +++G+ +LD R ++++ L + PR+V+
Sbjct: 119 AFIIVVTNPVDVMV----QLLHQHSGVPKNKIIGLGGVLDTSRLKYYISQKLNVCPRDVN 174
Query: 216 VPVVGGHAGVTIL----------PLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVV 260
+VG H +L PL + ++ E++ + DR N E+V
Sbjct: 175 AHIVGAHGNKMVLLKRYITVGGIPLQEFINNKL-ISDAELEAIFDRTVNTALEIV 228
>pdb|1CEQ|A Chain A, Chloroquine Binds In The Cofactor Binding Site Of
Plasmodium Falciparum Lactate Dehydrogenase
Length = 316
Score = 73.6 bits (179), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 65/235 (27%), Positives = 112/235 (47%), Gaps = 25/235 (10%)
Query: 44 SPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVV-NTP-GVTADISHMDTNAVVRG 101
+P K+ ++G+ G IG +A L+ L V+ L+D+V N P G D SH + A
Sbjct: 2 APKAKIVLVGS-GMIGGVMATLIVQKNLGDVV-LFDIVKNMPHGKALDTSHTNVMAYSNC 59
Query: 102 FLGQQQLEDALTGMDIVIIPAGVPRKPG-----MTRDDLFNINAGIVKTLCEGIAKCCPK 156
+ D L G D+VI+ AG + PG RDDL +N I+ + I K CP
Sbjct: 60 KVSGSNTYDDLAGSDVVIVTAGFTKAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKKNCPN 119
Query: 157 AIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVD 215
A + +++NPV+ V ++ + +++G+ +LD R ++++ L + PR+V+
Sbjct: 120 AFIIVVTNPVDVMV----QLLHQHSGVPKNKIIGLGGVLDTSRLKYYISQKLNVCPRDVN 175
Query: 216 VPVVGGHAGVTIL----------PLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVV 260
+VG H +L PL + ++ E++ + DR N E+V
Sbjct: 176 AHIVGAHGNKMVLLKRYITVGGIPLQEFINNKL-ISDAELEAIFDRTVNTALEIV 229
>pdb|1T2E|A Chain A, Plasmodium Falciparum Lactate Dehydrogenase S245a, A327p
Mutant Complexed With Nadh And Oxamate
Length = 322
Score = 73.2 bits (178), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 64/235 (27%), Positives = 112/235 (47%), Gaps = 25/235 (10%)
Query: 44 SPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVV-NTP-GVTADISHMDTNAVVRG 101
+P K+ ++G+ G IG +A L+ L V+ L+D+V N P G D SH + A
Sbjct: 2 APKAKIVLVGS-GMIGGVMATLIVQKNLGDVV-LFDIVKNMPHGKALDTSHTNVMAYSNC 59
Query: 102 FLGQQQLEDALTGMDIVIIPAGVPRKPG-----MTRDDLFNINAGIVKTLCEGIAKCCPK 156
+ D L G D+VI+ AG + PG RDDL +N I+ + I K CP
Sbjct: 60 KVSGSNTYDDLAGADVVIVTAGFTKAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKKNCPN 119
Query: 157 AIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVD 215
A + +++NPV+ + ++ + +++G+ +LD R ++++ L + PR+V+
Sbjct: 120 AFIIVVTNPVD----VMVQLLHQHSGVPKNKIIGLGGVLDTSRLKYYISQKLNVCPRDVN 175
Query: 216 VPVVGGHAGVTIL----------PLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVV 260
+VG H +L PL + ++ E++ + DR N E+V
Sbjct: 176 AHIVGAHGNKMVLLKRYITVGGIPLQEFINNKL-ISDAELEAIFDRTVNTALEIV 229
>pdb|1Y6J|A Chain A, L-Lactate Dehydrogenase From Clostridium Thermocellum
Cth-1135
Length = 318
Score = 72.8 bits (177), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 69/256 (26%), Positives = 118/256 (46%), Gaps = 36/256 (14%)
Query: 48 KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP--GVTADISHMDTNAVVRG--FL 103
KVA++GA G +G A M + + L L DV G DI+H G F+
Sbjct: 9 KVAIIGA-GFVGASAAFTMALRQTANELVLIDVFKEKAIGEAMDINH--------GLPFM 59
Query: 104 GQQQLE----DALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIV 159
GQ L + D++++ AG RKPG TR DL N I K + + I K ++
Sbjct: 60 GQMSLYAGDYSDVKDCDVIVVTAGANRKPGETRLDLAKKNVMIAKEVTQNIMKYYNHGVI 119
Query: 160 NLISNPVNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVDVPV 218
++SNPV+ I + +K +++G T+LD +R ++E LG+D + V +
Sbjct: 120 LVVSNPVD----IITYMIQKWSGLPVGKVIGSGTVLDSIRFRYLLSEKLGVDVKNVHGYI 175
Query: 219 VGGHAGVTILPLLSQVK------------PSCSLTPTEIDYLTDRIQNGGTEVVEAKTGA 266
+G H G + LPL S P C+ T + + + ++ G +++ K GA
Sbjct: 176 IGEH-GDSQLPLWSCTHIAGKNINEYIDDPKCNFTEEDKKKIAEDVKTAGATIIKNK-GA 233
Query: 267 GSATLSMCRHMLLPSL 282
+++ + ++ +L
Sbjct: 234 TYYGIAVSINTIVETL 249
>pdb|2A92|A Chain A, Crystal Structure Of Lactate Dehydrogenase From Plasmodium
Vivax: Complex With Nadh
pdb|2A92|B Chain B, Crystal Structure Of Lactate Dehydrogenase From Plasmodium
Vivax: Complex With Nadh
pdb|2A92|C Chain C, Crystal Structure Of Lactate Dehydrogenase From Plasmodium
Vivax: Complex With Nadh
pdb|2A92|D Chain D, Crystal Structure Of Lactate Dehydrogenase From Plasmodium
Vivax: Complex With Nadh
pdb|2AA3|A Chain A, Crystal Structure Of Plasmodium Vivax Lactate
Dehydrogenase Complex With Apadh
pdb|2AA3|B Chain B, Crystal Structure Of Plasmodium Vivax Lactate
Dehydrogenase Complex With Apadh
pdb|2AA3|C Chain C, Crystal Structure Of Plasmodium Vivax Lactate
Dehydrogenase Complex With Apadh
pdb|2AA3|D Chain D, Crystal Structure Of Plasmodium Vivax Lactate
Dehydrogenase Complex With Apadh
Length = 321
Score = 72.0 bits (175), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 67/228 (29%), Positives = 110/228 (48%), Gaps = 24/228 (10%)
Query: 51 VLGAAGGIGQPLAMLMKINPLVSVLHLYDVV-NTP-GVTADISHMDTNAVVRGFLGQQQL 108
VL +G IG +A L+ L V+ ++DVV N P G D SH + A +
Sbjct: 7 VLVGSGMIGGVMATLIVQKNLGDVV-MFDVVKNMPQGKALDTSHSNVMAYSNCKVTGSNS 65
Query: 109 EDALTGMDIVIIPAGVPRKPG-----MTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLIS 163
D L G D+VI+ AG + PG RDDL +N I+ + I CP A + +++
Sbjct: 66 YDDLKGADVVIVTAGFTKAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKNLCPNAFIIVVT 125
Query: 164 NPVNSTVPIAAEVFKKVGTYDPK-RLLGV-TMLDVVRANTFVAEVLGLDPREVDVPVVGG 221
NPV+ V + +F+ G PK +++G+ +LD R ++++ L + PR+V+ +VG
Sbjct: 126 NPVDVMVQL---LFEHSGV--PKNKIIGLGGVLDTSRLKYYISQKLNVCPRDVNALIVGA 180
Query: 222 HAGVTILPL---------LSQVKPSCSLTPTEIDYLTDRIQNGGTEVV 260
H +L L + + +T E++ + DR N E+V
Sbjct: 181 HGNKMVLLKRYITVGGIPLQEFINNKKITDEEVEGIFDRTVNTALEIV 228
>pdb|3NEP|X Chain X, 1.55a Resolution Structure Of Malate Dehydrogenase From
Salinibacter Ruber
Length = 314
Score = 71.2 bits (173), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 52/159 (32%), Positives = 82/159 (51%), Gaps = 12/159 (7%)
Query: 116 DIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAE 175
D+ II AG+PR PGM+RDDL N IV + E + P + + +++NP++ +A E
Sbjct: 71 DVCIITAGLPRSPGMSRDDLLAKNTEIVGGVTEQFVEGSPDSTIIVVANPLDVMTYVAYE 130
Query: 176 VFKKVGTYDPKRLLGVT-MLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQV 234
+ R++G+ +LD R +F+AE L + R+V ++GGH G T++PL
Sbjct: 131 ----ASGFPTNRVMGMAGVLDTGRFRSFIAEELDVSVRDVQALLMGGH-GDTMVPLPRYT 185
Query: 235 KPSCSLTPTEIDYLTDRIQNGGTEVVEAKTGAGSATLSM 273
P ID RI+ E+VE GAG + +
Sbjct: 186 TVGGIPVPQLIDDA--RIE----EIVERTKGAGGEIVDL 218
>pdb|1OC4|A Chain A, Lactate Dehydrogenase From Plasmodium Berghei
pdb|1OC4|B Chain B, Lactate Dehydrogenase From Plasmodium Berghei
Length = 322
Score = 70.5 bits (171), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 63/235 (26%), Positives = 110/235 (46%), Gaps = 23/235 (9%)
Query: 44 SPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVV-NTP-GVTADISHMDTNAVVRG 101
+P K+ ++G+ G IG +A L+ L V+ ++D+V N P G D SH + A
Sbjct: 2 APKAKIVLVGS-GMIGGVMATLIVQKNLGDVV-MFDIVKNMPHGKALDTSHTNVMAYSNC 59
Query: 102 FLGQQQLEDALTGMDIVIIPAGVPRKPG-----MTRDDLFNINAGIVKTLCEGIAKCCPK 156
+ D L D+VI+ AG + PG RDDL +N I+ + I CP
Sbjct: 60 KVSGSNTYDDLKDADVVIVTAGFTKAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKNNCPN 119
Query: 157 AIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVD 215
A + +++NPV+ V ++ + +++G+ +LD R ++++ L + PR+V+
Sbjct: 120 AFIIVVTNPVDVMV----QLLHQHSGVPKNKIVGLGGVLDTSRLKYYISQKLNVCPRDVN 175
Query: 216 VPVVGGHAGVTILPL---------LSQVKPSCSLTPTEIDYLTDRIQNGGTEVVE 261
+VG H +L L + + +T E+D + DR N E+V
Sbjct: 176 AHIVGAHGNKMVLLKRYITVGGIPLQEFINNKKITDQELDAIFDRTINTALEIVN 230
>pdb|1CET|A Chain A, Chloroquine Binds In The Cofactor Binding Site Of
Plasmodium Falciparum Lactate Dehydrogenase.
pdb|1LDG|A Chain A, Plasmodium Falciparum L-lactate Dehydrogenase Complexed
With Nadh And Oxamate
Length = 316
Score = 69.3 bits (168), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 64/235 (27%), Positives = 111/235 (47%), Gaps = 25/235 (10%)
Query: 44 SPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVV-NTP-GVTADISHMDTNAVVRG 101
+P K+ ++G+ G IG +A L+ L V+ L+D+V N P G D SH + A
Sbjct: 2 APKAKIVLVGS-GMIGGVMATLIVQKNLGDVV-LFDIVKNMPHGKALDTSHTNVMAYSNC 59
Query: 102 FLGQQQLEDALTGMDIVIIPAGVPRKPG-----MTRDDLFNINAGIVKTLCEGIAKCCPK 156
+ D L G D+VI+ AG + PG R DL +N I+ + I K CP
Sbjct: 60 KVSGSNTYDDLAGSDVVIVTAGFTKAPGKSDKEWNRLDLLPLNNKIMIEIGGHIKKNCPN 119
Query: 157 AIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVD 215
A + +++NPV+ V ++ + +++G+ +LD R ++++ L + PR+V+
Sbjct: 120 AFIIVVTNPVDVMV----QLLHQHSGVPKNKIIGLGGVLDTSRLKYYISQKLNVCPRDVN 175
Query: 216 VPVVGGHAGVTIL----------PLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVV 260
+VG H +L PL + ++ E++ + DR N E+V
Sbjct: 176 AHIVGAHGNKMVLLKRYITVGGIPLQEFINNKL-ISDAELEAIFDRTVNTALEIV 229
>pdb|3FI9|A Chain A, Crystal Structure Of Malate Dehydrogenase From
Porphyromonas Gingivalis
pdb|3FI9|B Chain B, Crystal Structure Of Malate Dehydrogenase From
Porphyromonas Gingivalis
Length = 343
Score = 65.1 bits (157), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 64/230 (27%), Positives = 99/230 (43%), Gaps = 21/230 (9%)
Query: 48 KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYD--VVNTPGVTADISHMDTNAVVRGFLGQ 105
K+ ++GAAG IG +A + L L LYD V GV +I H + F
Sbjct: 10 KLTIVGAAGMIGSNMAQTAAMMRLTPNLCLYDPFAVGLEGVAEEIRHCGFEGLNLTF--T 67
Query: 106 QQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAI-VNLISN 164
+++ALT ++ G PRK GMTR+DL NA I L + I CP V +I N
Sbjct: 68 SDIKEALTDAKYIVSSGGAPRKEGMTREDLLKGNAEIAAQLGKDIKSYCPDCKHVIIIFN 127
Query: 165 PVNSTVPIAAEVFKKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREV-DVPVVGGH- 222
P + T + ++ + P ++ + LD R + +A+ G+ V + GGH
Sbjct: 128 PADIT-GLVTLIYSGL---KPSQVTTLAGLDSTRLQSELAKHFGIKQSLVTNTRTYGGHG 183
Query: 223 ---------AGVTILPLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEAK 263
A V PL + LT + L R+ GG +++ +
Sbjct: 184 EQMAVFASTAKVNGTPLTDLIGTD-KLTNEQWAELKQRVVKGGANIIKLR 232
>pdb|2ZQY|A Chain A, T-State Structure Of Allosteric L-Lactate Dehydrogenase
From Lactobacillus Casei
pdb|2ZQY|B Chain B, T-State Structure Of Allosteric L-Lactate Dehydrogenase
From Lactobacillus Casei
pdb|2ZQY|C Chain C, T-State Structure Of Allosteric L-Lactate Dehydrogenase
From Lactobacillus Casei
pdb|2ZQY|D Chain D, T-State Structure Of Allosteric L-Lactate Dehydrogenase
From Lactobacillus Casei
pdb|2ZQZ|A Chain A, R-State Structure Of Allosteric L-Lactate Dehydrogenase
From Lactobacillus Casei
pdb|2ZQZ|B Chain B, R-State Structure Of Allosteric L-Lactate Dehydrogenase
From Lactobacillus Casei
pdb|2ZQZ|C Chain C, R-State Structure Of Allosteric L-Lactate Dehydrogenase
From Lactobacillus Casei
pdb|2ZQZ|D Chain D, R-State Structure Of Allosteric L-Lactate Dehydrogenase
From Lactobacillus Casei
pdb|2ZQZ|E Chain E, R-State Structure Of Allosteric L-Lactate Dehydrogenase
From Lactobacillus Casei
pdb|2ZQZ|F Chain F, R-State Structure Of Allosteric L-Lactate Dehydrogenase
From Lactobacillus Casei
pdb|3VKV|A Chain A, Complex Structure Of Lactobacillus Casei Lactate
Dehydrogenase With Fructose-1,6-Bisphosphate
pdb|3VKV|B Chain B, Complex Structure Of Lactobacillus Casei Lactate
Dehydrogenase With Fructose-1,6-Bisphosphate
pdb|3VKV|C Chain C, Complex Structure Of Lactobacillus Casei Lactate
Dehydrogenase With Fructose-1,6-Bisphosphate
pdb|3VKV|D Chain D, Complex Structure Of Lactobacillus Casei Lactate
Dehydrogenase With Fructose-1,6-Bisphosphate
pdb|3VKV|E Chain E, Complex Structure Of Lactobacillus Casei Lactate
Dehydrogenase With Fructose-1,6-Bisphosphate
pdb|3VKV|F Chain F, Complex Structure Of Lactobacillus Casei Lactate
Dehydrogenase With Fructose-1,6-Bisphosphate
Length = 326
Score = 61.2 bits (147), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 41/119 (34%), Positives = 62/119 (52%), Gaps = 6/119 (5%)
Query: 116 DIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAE 175
D+V+I AG P+KPG TR DL N N I+K++ + I I + +NPV+ I
Sbjct: 78 DLVVITAGAPQKPGETRLDLVNKNLKILKSIVDPIVDSGFNGIFLVAANPVD----ILTY 133
Query: 176 VFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQ 233
K+ + R++G T LD R +AE++ +D R V ++G H G T P+ S
Sbjct: 134 ATWKLSGFPKNRVVGSGTSLDTARFRQSIAEMVNVDARSVHAYIMGEH-GDTEFPVWSH 191
>pdb|4A73|A Chain A, Single Point Mutant Of Thermus Thermophilus Lactate
Dehydrogenase
pdb|4A73|B Chain B, Single Point Mutant Of Thermus Thermophilus Lactate
Dehydrogenase
pdb|4A73|C Chain C, Single Point Mutant Of Thermus Thermophilus Lactate
Dehydrogenase
pdb|4A73|D Chain D, Single Point Mutant Of Thermus Thermophilus Lactate
Dehydrogenase
Length = 310
Score = 61.2 bits (147), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 46/183 (25%), Positives = 86/183 (46%), Gaps = 20/183 (10%)
Query: 112 LTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVP 171
L G V++ AGV ++PG TR L + NA + + + + P+A++ + +NPV+
Sbjct: 65 LEGARAVVLAAGVAQRPGETRLQLLDRNAQVFAQVVPRVLEAAPEAVLLVATNPVD---- 120
Query: 172 IAAEVFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTIL-- 228
+ +V ++ P R++G T+LD R +AE L + P+ V V+G H +L
Sbjct: 121 VMTQVAYRLSGLPPGRVVGSGTILDTARFRALLAEYLRVAPQSVHAYVLGEHGDSEVLVW 180
Query: 229 --------PLLSQVKPS-CSLTPTEIDYLTDRIQNGGTEVVEAK----TGAGSATLSMCR 275
PLL + +L+P + + + ++ ++E K G G+ + R
Sbjct: 181 SSAQVGGVPLLEFAEARGAALSPEDRARIDEGVRRAAYRIIEGKGATYYGIGAGLARLVR 240
Query: 276 HML 278
+L
Sbjct: 241 AIL 243
>pdb|2E37|A Chain A, Structure Of Tt0471 Protein From Thermus Thermophilus
pdb|2E37|B Chain B, Structure Of Tt0471 Protein From Thermus Thermophilus
pdb|2E37|C Chain C, Structure Of Tt0471 Protein From Thermus Thermophilus
pdb|2E37|D Chain D, Structure Of Tt0471 Protein From Thermus Thermophilus
pdb|2E37|E Chain E, Structure Of Tt0471 Protein From Thermus Thermophilus
pdb|2E37|F Chain F, Structure Of Tt0471 Protein From Thermus Thermophilus
pdb|2E37|G Chain G, Structure Of Tt0471 Protein From Thermus Thermophilus
pdb|2E37|H Chain H, Structure Of Tt0471 Protein From Thermus Thermophilus
Length = 310
Score = 60.8 bits (146), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 46/183 (25%), Positives = 86/183 (46%), Gaps = 20/183 (10%)
Query: 112 LTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVP 171
L G V++ AGV ++PG TR L + NA + + + + P+A++ + +NPV+
Sbjct: 65 LEGARAVVLAAGVAQRPGETRLQLLDRNAQVFAQVVPRVLEAAPEAVLLVATNPVD---- 120
Query: 172 IAAEVFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTIL-- 228
+ +V ++ P R++G T+LD R +AE L + P+ V V+G H +L
Sbjct: 121 VXTQVAYRLSGLPPGRVVGSGTILDTARFRALLAEYLRVAPQSVHAYVLGEHGDSEVLVW 180
Query: 229 --------PLLSQVKPSC-SLTPTEIDYLTDRIQNGGTEVVEAK----TGAGSATLSMCR 275
PLL + +L+P + + + ++ ++E K G G+ + R
Sbjct: 181 SSAQVGGVPLLEFAEARGRALSPEDRARIDEGVRRAAYRIIEGKGATYYGIGAGLARLVR 240
Query: 276 HML 278
+L
Sbjct: 241 AIL 243
>pdb|2V6M|A Chain A, Crystal Structure Of Lactate Dehydrogenase From Thermus
Thermophilus Hb8 (Apo Form)
pdb|2V6M|B Chain B, Crystal Structure Of Lactate Dehydrogenase From Thermus
Thermophilus Hb8 (Apo Form)
pdb|2V6M|C Chain C, Crystal Structure Of Lactate Dehydrogenase From Thermus
Thermophilus Hb8 (Apo Form)
pdb|2V6M|D Chain D, Crystal Structure Of Lactate Dehydrogenase From Thermus
Thermophilus Hb8 (Apo Form)
pdb|2V7P|A Chain A, Crystal Structure Of Lactate Dehydrogenase From Thermus
Thermophilus Hb8 (Holo Form)
pdb|2V7P|B Chain B, Crystal Structure Of Lactate Dehydrogenase From Thermus
Thermophilus Hb8 (Holo Form)
pdb|2V7P|C Chain C, Crystal Structure Of Lactate Dehydrogenase From Thermus
Thermophilus Hb8 (Holo Form)
pdb|2V7P|D Chain D, Crystal Structure Of Lactate Dehydrogenase From Thermus
Thermophilus Hb8 (Holo Form)
Length = 310
Score = 60.1 bits (144), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 46/183 (25%), Positives = 86/183 (46%), Gaps = 20/183 (10%)
Query: 112 LTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVP 171
L G V++ AGV ++PG TR L + NA + + + + P+A++ + +NPV+
Sbjct: 65 LEGARAVVLAAGVAQRPGETRLQLLDRNAQVFAQVVPRVLEAAPEAVLLVATNPVD---- 120
Query: 172 IAAEVFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTIL-- 228
+ +V ++ P R++G T+LD R +AE L + P+ V V+G H +L
Sbjct: 121 VMTQVAYRLSGLPPGRVVGSGTILDTARFRALLAEYLRVAPQSVHAYVLGEHGDSEVLVW 180
Query: 229 --------PLLSQVKPSC-SLTPTEIDYLTDRIQNGGTEVVEAK----TGAGSATLSMCR 275
PLL + +L+P + + + ++ ++E K G G+ + R
Sbjct: 181 SSAQVGGVPLLEFAEARGRALSPEDRARIDEGVRRAAYRIIEGKGATYYGIGAGLARLVR 240
Query: 276 HML 278
+L
Sbjct: 241 AIL 243
>pdb|3VKU|A Chain A, Penta Mutant Of Lactobacillus Casei Lactate Dehydrogenase
pdb|3VKU|B Chain B, Penta Mutant Of Lactobacillus Casei Lactate Dehydrogenase
pdb|3VKU|C Chain C, Penta Mutant Of Lactobacillus Casei Lactate Dehydrogenase
pdb|3VKU|D Chain D, Penta Mutant Of Lactobacillus Casei Lactate Dehydrogenase
pdb|3VKU|E Chain E, Penta Mutant Of Lactobacillus Casei Lactate Dehydrogenase
pdb|3VKU|F Chain F, Penta Mutant Of Lactobacillus Casei Lactate Dehydrogenase
Length = 326
Score = 59.7 bits (143), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 45/160 (28%), Positives = 77/160 (48%), Gaps = 17/160 (10%)
Query: 116 DIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAE 175
D+V+I AG P+KPG TR DL N N I+K++ + I I + +NPV+ I
Sbjct: 78 DLVVITAGAPQKPGETRLDLVNKNLKILKSIVDPIVDSGFNGIFLVAANPVD----ILTY 133
Query: 176 VFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQ- 233
K+ + R++G T LD R +A+++ +D R V ++G H G T P+ S
Sbjct: 134 ATWKLSGFPKNRVVGSGTSLDTARFRQSIAKMVNVDARSVHAYIMGEH-GDTEFPVWSHA 192
Query: 234 ----------VKPSCSLTPTEIDYLTDRIQNGGTEVVEAK 263
VK + ++ + + ++N E+++ K
Sbjct: 193 NIGGVTIAEWVKAHPEIKEDKLVKMFEDVRNKAYEIIKLK 232
>pdb|1LLC|A Chain A, Structure Determination Of The Allosteric L-Lactate
Dehydrogenase From Lactobacillus Casei At 3.0 Angstroms
Resolution
Length = 325
Score = 59.7 bits (143), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 40/119 (33%), Positives = 62/119 (52%), Gaps = 6/119 (5%)
Query: 116 DIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAE 175
D+V+I AG P++PG TR DL N N I+K++ + I I + +NPV+ I
Sbjct: 77 DLVVITAGAPKQPGETRLDLVNKNLKILKSIVDPIVDSGFNLIFLVAANPVD----ILTY 132
Query: 176 VFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQ 233
K+ + R++G T LD R +AE++ +D R V ++G H G T P+ S
Sbjct: 133 ATWKLSGFPKNRVVGSGTSLDTARFRQSIAEMVNVDARSVHAYIMGEH-GDTEFPVWSH 190
>pdb|2XXB|A Chain A, Penta-Mutant Of Thermus Thermophilus Lactate
Dehydrogenase, Complex With Amp
pdb|2XXB|B Chain B, Penta-Mutant Of Thermus Thermophilus Lactate
Dehydrogenase, Complex With Amp
pdb|2XXJ|A Chain A, Penta Mutant Of Lactate Dehydrogenase From Thermus
Thermophilus, Ternary Complex
pdb|2XXJ|B Chain B, Penta Mutant Of Lactate Dehydrogenase From Thermus
Thermophilus, Ternary Complex
pdb|2XXJ|C Chain C, Penta Mutant Of Lactate Dehydrogenase From Thermus
Thermophilus, Ternary Complex
pdb|2XXJ|D Chain D, Penta Mutant Of Lactate Dehydrogenase From Thermus
Thermophilus, Ternary Complex
pdb|3ZZN|A Chain A, 5-Mutant (R79w, R151a, E279a, E299a,E313a)
Lactate-Dehydrogenase From Thermus Thermophillus
pdb|3ZZN|B Chain B, 5-Mutant (R79w, R151a, E279a, E299a,E313a)
Lactate-Dehydrogenase From Thermus Thermophillus
pdb|3ZZN|C Chain C, 5-Mutant (R79w, R151a, E279a, E299a,E313a)
Lactate-Dehydrogenase From Thermus Thermophillus
pdb|3ZZN|D Chain D, 5-Mutant (R79w, R151a, E279a, E299a,E313a)
Lactate-Dehydrogenase From Thermus Thermophillus
Length = 310
Score = 58.9 bits (141), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 46/183 (25%), Positives = 85/183 (46%), Gaps = 20/183 (10%)
Query: 112 LTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVP 171
L G V++ AGV ++PG TR L + NA + + + + P+A++ + +NPV+
Sbjct: 65 LEGARAVVLAAGVAQRPGETRLQLLDRNAQVFAQVVPRVLEAAPEAVLLVATNPVD---- 120
Query: 172 IAAEVFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTIL-- 228
+ +V + P R++G T+LD R +AE L + P+ V V+G H +L
Sbjct: 121 VMTQVAYALSGLPPGRVVGSGTILDTARFRALLAEYLRVAPQSVHAYVLGEHGDSEVLVW 180
Query: 229 --------PLLSQVKPSC-SLTPTEIDYLTDRIQNGGTEVVEAK----TGAGSATLSMCR 275
PLL + +L+P + + + ++ ++E K G G+ + R
Sbjct: 181 SSAQVGGVPLLEFAEARGRALSPEDRARIDEGVRRAAYRIIEGKGATYYGIGAGLARLVR 240
Query: 276 HML 278
+L
Sbjct: 241 AIL 243
>pdb|4H7P|A Chain A, Crystal Structure Of A Putative Cytosolic Malate
Dehydrogenase From Leishmania Major Friedlin
pdb|4H7P|B Chain B, Crystal Structure Of A Putative Cytosolic Malate
Dehydrogenase From Leishmania Major Friedlin
pdb|4I1I|A Chain A, Crystal Structure Of A Putative Cytosolic Malate
Dehydrogenase From Leishmania Major Friedlin In Complex
With Nad
pdb|4I1I|B Chain B, Crystal Structure Of A Putative Cytosolic Malate
Dehydrogenase From Leishmania Major Friedlin In Complex
With Nad
Length = 345
Score = 58.2 bits (139), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 60/223 (26%), Positives = 92/223 (41%), Gaps = 39/223 (17%)
Query: 26 IEGESSGLGRMDCRAKGGSPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPG 85
+E ++ G G M KVAV GAAG IG L L+ L+ P
Sbjct: 12 LEAQTQGPGSMSA--------VKVAVTGAAGQIGYALVPLIARGALLG----------PT 53
Query: 86 VTADISHMDTNAVVRGFLG-QQQLED-----------------ALTGMDIVIIPAGVPRK 127
++ +D ++ G + +LED A G+ I I+ PRK
Sbjct: 54 TPVELRLLDIEPALKALAGVEAELEDCAFPLLDKVVVTADPRVAFDGVAIAIMCGAFPRK 113
Query: 128 PGMTRDDLFNINAGIVKTLCEGIAK-CCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPK 186
GM R DL +NA I K E IA V ++ NP N+ I + + G +P+
Sbjct: 114 AGMERKDLLEMNARIFKEQGEAIAAVAASDCRVVVVGNPANTNALILLKSAQ--GKLNPR 171
Query: 187 RLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILP 229
+ +T LD RA + +A G+ +V ++ G+ T +P
Sbjct: 172 HVTAMTRLDHNRALSLLARKAGVPVSQVRNVIIWGNHSSTQVP 214
>pdb|1EZ4|A Chain A, Crystal Structure Of Non-Allosteric L-Lactate
Dehydrogenase From Lactobacillus Pentosus At 2.3
Angstrom Resolution
pdb|1EZ4|B Chain B, Crystal Structure Of Non-Allosteric L-Lactate
Dehydrogenase From Lactobacillus Pentosus At 2.3
Angstrom Resolution
pdb|1EZ4|C Chain C, Crystal Structure Of Non-Allosteric L-Lactate
Dehydrogenase From Lactobacillus Pentosus At 2.3
Angstrom Resolution
pdb|1EZ4|D Chain D, Crystal Structure Of Non-Allosteric L-Lactate
Dehydrogenase From Lactobacillus Pentosus At 2.3
Angstrom Resolution
Length = 318
Score = 58.2 bits (139), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 60/252 (23%), Positives = 105/252 (41%), Gaps = 26/252 (10%)
Query: 45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDT-NAVVRG 101
P + VL G +G A M + + DVV T G D+ A +
Sbjct: 3 PNHQKVVLVGDGAVGSSYAFAMAQQGIAEEFVIVDVVKDRTKGDALDLEDAQAFTAPKKI 62
Query: 102 FLGQ-QQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVN 160
+ G+ +DA D+V+I AG P+KPG +R DL N N I+ ++ + + I
Sbjct: 63 YSGEYSDCKDA----DLVVITAGAPQKPGESRLDLVNKNLNILSSIVKPVVDSGFDGIFL 118
Query: 161 LISNPVNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVDVPVV 219
+ +NPV+ I K + +R++G T LD R + + +DPR VD ++
Sbjct: 119 VAANPVD----ILTYATWKFSGFPKERVIGSGTSLDSSRLRVALGKQFNVDPRSVDAYIM 174
Query: 220 GGHAGVTILPL---------LSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEAK----TGA 266
G H + V ++ ++ L D ++N +++ K G
Sbjct: 175 GEHGDSEFAAYSTATIGTRPVRDVAKEQGVSDDDLAKLEDGVRNKAYDIINLKGATFYGI 234
Query: 267 GSATLSMCRHML 278
G+A + + + +L
Sbjct: 235 GTALMRISKAIL 246
>pdb|3PQD|A Chain A, Crystal Structure Of L-Lactate Dehydrogenase From Bacillus
Subtilis Complexed With Fbp And Nad+
pdb|3PQD|B Chain B, Crystal Structure Of L-Lactate Dehydrogenase From Bacillus
Subtilis Complexed With Fbp And Nad+
pdb|3PQD|C Chain C, Crystal Structure Of L-Lactate Dehydrogenase From Bacillus
Subtilis Complexed With Fbp And Nad+
pdb|3PQD|D Chain D, Crystal Structure Of L-Lactate Dehydrogenase From Bacillus
Subtilis Complexed With Fbp And Nad+
pdb|3PQD|E Chain E, Crystal Structure Of L-Lactate Dehydrogenase From Bacillus
Subtilis Complexed With Fbp And Nad+
pdb|3PQD|F Chain F, Crystal Structure Of L-Lactate Dehydrogenase From Bacillus
Subtilis Complexed With Fbp And Nad+
pdb|3PQD|G Chain G, Crystal Structure Of L-Lactate Dehydrogenase From Bacillus
Subtilis Complexed With Fbp And Nad+
pdb|3PQD|H Chain H, Crystal Structure Of L-Lactate Dehydrogenase From Bacillus
Subtilis Complexed With Fbp And Nad+
Length = 326
Score = 57.8 bits (138), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 63/233 (27%), Positives = 99/233 (42%), Gaps = 27/233 (11%)
Query: 48 KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP--GVTADISHMDTNA---VVRGF 102
KVA++GA G +G A + + L + DV G D++H A V +
Sbjct: 7 KVALIGA-GFVGSSYAFALINQGITDELVVIDVNKEKAMGDVMDLNHGKAFAPQPVKTSY 65
Query: 103 LGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLI 162
+ +DA DIV I AG +KPG TR +L N I K + + I +
Sbjct: 66 GTYEDCKDA----DIVCICAGANQKPGETRLELVEKNLKIFKGIVSEVMASGFDGIFLVA 121
Query: 163 SNPVNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVDVPVVGG 221
+NPV+ I K +R++G T LD R ++E G P+ V ++G
Sbjct: 122 TNPVD----ILTYATWKFSGLPKERVIGSGTTLDSARFRFMLSEYFGAAPQNVHAHIIGE 177
Query: 222 HAGVTILPLLSQ-----------VKPSCSLTPTEIDYLTDRIQNGGTEVVEAK 263
H G T LP+ S V+ + + E+D + D ++N ++E K
Sbjct: 178 H-GDTELPVWSHANVGGVPVSELVEKNDAYKQEELDQIVDDVKNAAYHIIEKK 229
>pdb|3PQE|A Chain A, Crystal Structure Of L-Lactate Dehydrogenase From Bacillus
Subtilis With H171c Mutation
pdb|3PQE|B Chain B, Crystal Structure Of L-Lactate Dehydrogenase From Bacillus
Subtilis With H171c Mutation
pdb|3PQE|C Chain C, Crystal Structure Of L-Lactate Dehydrogenase From Bacillus
Subtilis With H171c Mutation
pdb|3PQE|D Chain D, Crystal Structure Of L-Lactate Dehydrogenase From Bacillus
Subtilis With H171c Mutation
pdb|3PQF|A Chain A, Crystal Structure Of L-Lactate Dehydrogenase From Bacillus
Subtilis Mutation H171c Complexed With Nad+
pdb|3PQF|B Chain B, Crystal Structure Of L-Lactate Dehydrogenase From Bacillus
Subtilis Mutation H171c Complexed With Nad+
pdb|3PQF|C Chain C, Crystal Structure Of L-Lactate Dehydrogenase From Bacillus
Subtilis Mutation H171c Complexed With Nad+
pdb|3PQF|D Chain D, Crystal Structure Of L-Lactate Dehydrogenase From Bacillus
Subtilis Mutation H171c Complexed With Nad+
Length = 326
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 63/233 (27%), Positives = 99/233 (42%), Gaps = 27/233 (11%)
Query: 48 KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP--GVTADISHMDTNA---VVRGF 102
KVA++GA G +G A + + L + DV G D++H A V +
Sbjct: 7 KVALIGA-GFVGSSYAFALINQGITDELVVIDVNKEKAMGDVMDLNHGKAFAPQPVKTSY 65
Query: 103 LGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLI 162
+ +DA DIV I AG +KPG TR +L N I K + + I +
Sbjct: 66 GTYEDCKDA----DIVCICAGANQKPGETRLELVEKNLKIFKGIVSEVMASGFDGIFLVA 121
Query: 163 SNPVNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVDVPVVGG 221
+NPV+ I K +R++G T LD R ++E G P+ V ++G
Sbjct: 122 TNPVD----ILTYATWKFSGLPKERVIGSGTTLDSARFRFMLSEYFGAAPQNVCAHIIGE 177
Query: 222 HAGVTILPLLSQ-----------VKPSCSLTPTEIDYLTDRIQNGGTEVVEAK 263
H G T LP+ S V+ + + E+D + D ++N ++E K
Sbjct: 178 H-GDTELPVWSHANVGGVPVSELVEKNDAYKQEELDQIVDDVKNAAYHIIEKK 229
>pdb|2HLP|A Chain A, Crystal Structure Of The E267r Mutant Of A Halophilic
Malate Dehydrogenase In The Apo Form
pdb|2HLP|B Chain B, Crystal Structure Of The E267r Mutant Of A Halophilic
Malate Dehydrogenase In The Apo Form
Length = 303
Score = 56.2 bits (134), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 55/204 (26%), Positives = 91/204 (44%), Gaps = 17/204 (8%)
Query: 82 NTPGVTADISH---MDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNI 138
+T G AD +H D+N VR Q ED G D+V+I AG+PR+PG TR DL
Sbjct: 40 DTVGQAADTNHGIAYDSNTRVR----QGGYEDT-AGSDVVVITAGIPRQPGQTRIDLAGD 94
Query: 139 NAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVV 197
NA I++ + + + I SNPV+ + + G ++++G LD
Sbjct: 95 NAPIMEDIQSSLDEHNDDYISLTTSNPVD----LLNRHLYEAGDRSREQVIGFGGRLDSA 150
Query: 198 RANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSCS---LTPTEIDYLTDRIQN 254
R ++E + V+ ++G H G +P+ S+V+ + + E + L +Q
Sbjct: 151 RFRYVLSEEFDAPVQNVEGTILGEH-GDAQVPVFSKVRVDGTDPEFSGDEKEQLLGDLQE 209
Query: 255 GGTEVVEAKTGAGSATLSMCRHML 278
+V+E K HM+
Sbjct: 210 SAMDVIERKGATEWGPARGVAHMV 233
>pdb|3D0O|A Chain A, Crystal Structure Of Lactate Dehydrogenase From
Staphylococcus Aureus
pdb|3D0O|B Chain B, Crystal Structure Of Lactate Dehydrogenase From
Staphylococcus Aureus
pdb|3D4P|A Chain A, Crystal Structure Of Lactate Dehydrogenase From
Staphylococcus Aureus Complexed With Nad And Pyruvate
pdb|3D4P|B Chain B, Crystal Structure Of Lactate Dehydrogenase From
Staphylococcus Aureus Complexed With Nad And Pyruvate
Length = 317
Score = 56.2 bits (134), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 40/119 (33%), Positives = 60/119 (50%), Gaps = 6/119 (5%)
Query: 116 DIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAE 175
D+V+I AG +KPG TR DL + N I K++ + I + +NPV+ I A
Sbjct: 76 DLVVICAGAAQKPGETRLDLVSKNLKIFKSIVGEVMASKFDGIFLVATNPVD----ILAY 131
Query: 176 VFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQ 233
K +R++G T+LD R ++E + PR VD ++G H G T LP+ S
Sbjct: 132 ATWKFSGLPKERVIGSGTILDSARFRLLLSEAFDVAPRSVDAQIIGEH-GDTELPVWSH 189
>pdb|2J5K|A Chain A, 2.0 A Resolution Structure Of The Wild Type Malate
Dehydrogenase From Haloarcula Marismortui (radiation
Damage Series)
pdb|2J5K|B Chain B, 2.0 A Resolution Structure Of The Wild Type Malate
Dehydrogenase From Haloarcula Marismortui (radiation
Damage Series)
pdb|2J5K|C Chain C, 2.0 A Resolution Structure Of The Wild Type Malate
Dehydrogenase From Haloarcula Marismortui (radiation
Damage Series)
pdb|2J5K|D Chain D, 2.0 A Resolution Structure Of The Wild Type Malate
Dehydrogenase From Haloarcula Marismortui (radiation
Damage Series)
pdb|2J5Q|A Chain A, 2.15 A Resolution Structure Of The Wild Type Malate
Dehydrogenase From Haloarcula Marismortui After First
Radiation Burn (Radiation Damage Series)
pdb|2J5Q|B Chain B, 2.15 A Resolution Structure Of The Wild Type Malate
Dehydrogenase From Haloarcula Marismortui After First
Radiation Burn (Radiation Damage Series)
pdb|2J5Q|C Chain C, 2.15 A Resolution Structure Of The Wild Type Malate
Dehydrogenase From Haloarcula Marismortui After First
Radiation Burn (Radiation Damage Series)
pdb|2J5Q|D Chain D, 2.15 A Resolution Structure Of The Wild Type Malate
Dehydrogenase From Haloarcula Marismortui After First
Radiation Burn (Radiation Damage Series)
pdb|2J5R|A Chain A, 2.25 A Resolution Structure Of The Wild Type Malate
Dehydrogenase From Haloarcula Marismortui After Second
Radiation Burn (Radiation Damage Series)
pdb|2J5R|B Chain B, 2.25 A Resolution Structure Of The Wild Type Malate
Dehydrogenase From Haloarcula Marismortui After Second
Radiation Burn (Radiation Damage Series)
pdb|2J5R|C Chain C, 2.25 A Resolution Structure Of The Wild Type Malate
Dehydrogenase From Haloarcula Marismortui After Second
Radiation Burn (Radiation Damage Series)
pdb|2J5R|D Chain D, 2.25 A Resolution Structure Of The Wild Type Malate
Dehydrogenase From Haloarcula Marismortui After Second
Radiation Burn (Radiation Damage Series)
Length = 304
Score = 56.2 bits (134), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 55/204 (26%), Positives = 91/204 (44%), Gaps = 17/204 (8%)
Query: 82 NTPGVTADISH---MDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNI 138
+T G AD +H D+N VR Q ED G D+V+I AG+PR+PG TR DL
Sbjct: 41 DTVGQAADTNHGIAYDSNTRVR----QGGYEDT-AGSDVVVITAGIPRQPGQTRIDLAGD 95
Query: 139 NAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVV 197
NA I++ + + + I SNPV+ + + G ++++G LD
Sbjct: 96 NAPIMEDIQSSLDEHNDDYISLTTSNPVD----LLNRHLYEAGDRSREQVIGFGGRLDSA 151
Query: 198 RANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSCS---LTPTEIDYLTDRIQN 254
R ++E + V+ ++G H G +P+ S+V+ + + E + L +Q
Sbjct: 152 RFRYVLSEEFDAPVQNVEGTILGEH-GDAQVPVFSKVRVDGTDPEFSGDEKEQLLGDLQE 210
Query: 255 GGTEVVEAKTGAGSATLSMCRHML 278
+V+E K HM+
Sbjct: 211 SAMDVIERKGATEWGPARGVAHMV 234
>pdb|1HLP|A Chain A, Structural Features Stabilizing Halophilic Malate
Dehydrogenase From An Archaebacterium
pdb|1HLP|B Chain B, Structural Features Stabilizing Halophilic Malate
Dehydrogenase From An Archaebacterium
pdb|1D3A|A Chain A, Crystal Structure Of The Wild Type Halophilic Malate
Dehydrogenase In The Apo Form
pdb|1D3A|B Chain B, Crystal Structure Of The Wild Type Halophilic Malate
Dehydrogenase In The Apo Form
Length = 303
Score = 56.2 bits (134), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 55/204 (26%), Positives = 91/204 (44%), Gaps = 17/204 (8%)
Query: 82 NTPGVTADISH---MDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNI 138
+T G AD +H D+N VR Q ED G D+V+I AG+PR+PG TR DL
Sbjct: 40 DTVGQAADTNHGIAYDSNTRVR----QGGYEDT-AGSDVVVITAGIPRQPGQTRIDLAGD 94
Query: 139 NAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVV 197
NA I++ + + + I SNPV+ + + G ++++G LD
Sbjct: 95 NAPIMEDIQSSLDEHNDDYISLTTSNPVD----LLNRHLYEAGDRSREQVIGFGGRLDSA 150
Query: 198 RANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSCS---LTPTEIDYLTDRIQN 254
R ++E + V+ ++G H G +P+ S+V+ + + E + L +Q
Sbjct: 151 RFRYVLSEEFDAPVQNVEGTILGEH-GDAQVPVFSKVRVDGTDPEFSGDEKEQLLGDLQE 209
Query: 255 GGTEVVEAKTGAGSATLSMCRHML 278
+V+E K HM+
Sbjct: 210 SAMDVIERKGATEWGPARGVAHMV 233
>pdb|3H3J|A Chain A, Crystal Structure Of Lactate Dehydrogenase Mutant (A85r)
Fro Staphylococcus Aureus Complexed With Nad And
Pyruvate
pdb|3H3J|B Chain B, Crystal Structure Of Lactate Dehydrogenase Mutant (A85r)
Fro Staphylococcus Aureus Complexed With Nad And
Pyruvate
Length = 317
Score = 55.8 bits (133), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 40/119 (33%), Positives = 60/119 (50%), Gaps = 6/119 (5%)
Query: 116 DIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAE 175
D+V+I AG +KPG TR DL + N I K++ + I + +NPV+ I A
Sbjct: 76 DLVVICAGARQKPGETRLDLVSKNLKIFKSIVGEVMASKFDGIFLVATNPVD----ILAY 131
Query: 176 VFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQ 233
K +R++G T+LD R ++E + PR VD ++G H G T LP+ S
Sbjct: 132 ATWKFSGLPKERVIGSGTILDSARFRLLLSEAFDVAPRSVDAQIIGEH-GDTELPVWSH 189
>pdb|2X0I|A Chain A, 2.9 A Resolution Structure Of Malate Dehydrogenase From
Archaeoglobus Fulgidus In Complex With Nadh
pdb|2X0J|A Chain A, 2.8 A Resolution Structure Of Malate Dehydrogenase From
Archaeoglobus Fulgidus In Complex With Etheno-Nad
Length = 294
Score = 55.5 bits (132), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 49/85 (57%), Gaps = 8/85 (9%)
Query: 112 LTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVP 171
L G +I+++ AG+ RKPGMTR DL + NAGI+K + + I + P++ + +++NP++
Sbjct: 67 LKGSEIIVVTAGLARKPGMTRLDLAHKNAGIIKDIAKKIVENAPESKILVVTNPMDVMTY 126
Query: 172 IAA--------EVFKKVGTYDPKRL 188
I EVF D +RL
Sbjct: 127 IMWKESGKPRNEVFGMGNQLDSQRL 151
>pdb|2X0R|A Chain A, R207s,R292s Mutant Of Malate Dehydrogenase From The
Halophilic Archaeon Haloarcula Marismortui (Holo Form)
pdb|2X0R|B Chain B, R207s,R292s Mutant Of Malate Dehydrogenase From The
Halophilic Archaeon Haloarcula Marismortui (Holo Form)
Length = 304
Score = 55.1 bits (131), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 55/204 (26%), Positives = 90/204 (44%), Gaps = 17/204 (8%)
Query: 82 NTPGVTADISH---MDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNI 138
+T G AD +H D+N VR Q ED G D+V+I AG+PR+PG TR DL
Sbjct: 41 DTVGQAADTNHGIAYDSNTRVR----QGGYEDT-AGSDVVVITAGIPRQPGQTRIDLAGD 95
Query: 139 NAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVV 197
NA I++ + + + I SNPV+ + + G ++++G LD
Sbjct: 96 NAPIMEDIQSSLDEHNDDYISLTTSNPVD----LLNRHLYEAGDRSREQVIGFGGRLDSA 151
Query: 198 RANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSCS---LTPTEIDYLTDRIQN 254
R ++E + V+ ++G H G +P+ S+V + + E + L +Q
Sbjct: 152 RFRYVLSEEFDAPVQNVEGTILGEH-GDAQVPVFSKVSVDGTDPEFSGDEKEQLLGDLQE 210
Query: 255 GGTEVVEAKTGAGSATLSMCRHML 278
+V+E K HM+
Sbjct: 211 SAMDVIERKGATEWGPARGVAHMV 234
>pdb|1O6Z|A Chain A, 1.95 A Resolution Structure Of (r207s,r292s) Mutant Of
Malate Dehydrogenase From The Halophilic Archaeon
Haloarcula Marismortui (holo Form)
pdb|1O6Z|B Chain B, 1.95 A Resolution Structure Of (r207s,r292s) Mutant Of
Malate Dehydrogenase From The Halophilic Archaeon
Haloarcula Marismortui (holo Form)
pdb|1O6Z|C Chain C, 1.95 A Resolution Structure Of (r207s,r292s) Mutant Of
Malate Dehydrogenase From The Halophilic Archaeon
Haloarcula Marismortui (holo Form)
pdb|1O6Z|D Chain D, 1.95 A Resolution Structure Of (r207s,r292s) Mutant Of
Malate Dehydrogenase From The Halophilic Archaeon
Haloarcula Marismortui (holo Form)
Length = 303
Score = 55.1 bits (131), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 55/204 (26%), Positives = 90/204 (44%), Gaps = 17/204 (8%)
Query: 82 NTPGVTADISH---MDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNI 138
+T G AD +H D+N VR Q ED G D+V+I AG+PR+PG TR DL
Sbjct: 40 DTVGQAADTNHGIAYDSNTRVR----QGGYEDT-AGSDVVVITAGIPRQPGQTRIDLAGD 94
Query: 139 NAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVV 197
NA I++ + + + I SNPV+ + + G ++++G LD
Sbjct: 95 NAPIMEDIQSSLDEHNDDYISLTTSNPVD----LLNRHLYEAGDRSREQVIGFGGRLDSA 150
Query: 198 RANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSCS---LTPTEIDYLTDRIQN 254
R ++E + V+ ++G H G +P+ S+V + + E + L +Q
Sbjct: 151 RFRYVLSEEFDAPVQNVEGTILGEH-GDAQVPVFSKVSVDGTDPEFSGDEKEQLLGDLQE 209
Query: 255 GGTEVVEAKTGAGSATLSMCRHML 278
+V+E K HM+
Sbjct: 210 SAMDVIERKGATEWGPARGVAHMV 233
>pdb|1LLD|A Chain A, Molecular Basis Of Allosteric Activation Of Bacterial
L-Lactate Dehydrogenase
pdb|1LLD|B Chain B, Molecular Basis Of Allosteric Activation Of Bacterial
L-Lactate Dehydrogenase
pdb|1LTH|T Chain T, T And R States In The Crystals Of Bacterial L-Lactate
Dehydrogenase Reveal The Mechanism For Allosteric
Control
pdb|1LTH|R Chain R, T And R States In The Crystals Of Bacterial L-Lactate
Dehydrogenase Reveal The Mechanism For Allosteric
Control
Length = 319
Score = 55.1 bits (131), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 56/202 (27%), Positives = 89/202 (44%), Gaps = 14/202 (6%)
Query: 48 KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQ 107
K+AV+GA G +G LA + + L D+ V A++ M + +
Sbjct: 9 KLAVIGA-GAVGSTLAFAAAQRGIAREIVLEDIAKER-VEAEVLDMQHGSSFYPTVSIDG 66
Query: 108 LED--ALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNP 165
+D D+V+I AG +KPG +R +L I+K + + K P AI LI+NP
Sbjct: 67 SDDPEICRDADMVVITAGPRQKPGQSRLELVGATVNILKAIMPNLVKVAPNAIYMLITNP 126
Query: 166 VNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVDVPVVGGHAG 224
V+ IA V +K+ ++ G T LD R +A+ G++ + V + G H G
Sbjct: 127 VD----IATHVAQKLTGLPENQIFGSGTNLDSARLRFLIAQQTGVNVKNVHAYIAGEH-G 181
Query: 225 VTILPLLSQVK----PSCSLTP 242
+ +PL P TP
Sbjct: 182 DSEVPLWESATIGGVPMSDWTP 203
>pdb|1LDN|A Chain A, Structure Of A Ternary Complex Of An Allosteric Lactate
Dehydrogenase From Bacillus Stearothermophilus At 2.5
Angstroms Resolution
pdb|1LDN|B Chain B, Structure Of A Ternary Complex Of An Allosteric Lactate
Dehydrogenase From Bacillus Stearothermophilus At 2.5
Angstroms Resolution
pdb|1LDN|C Chain C, Structure Of A Ternary Complex Of An Allosteric Lactate
Dehydrogenase From Bacillus Stearothermophilus At 2.5
Angstroms Resolution
pdb|1LDN|D Chain D, Structure Of A Ternary Complex Of An Allosteric Lactate
Dehydrogenase From Bacillus Stearothermophilus At 2.5
Angstroms Resolution
pdb|1LDN|E Chain E, Structure Of A Ternary Complex Of An Allosteric Lactate
Dehydrogenase From Bacillus Stearothermophilus At 2.5
Angstroms Resolution
pdb|1LDN|F Chain F, Structure Of A Ternary Complex Of An Allosteric Lactate
Dehydrogenase From Bacillus Stearothermophilus At 2.5
Angstroms Resolution
pdb|1LDN|G Chain G, Structure Of A Ternary Complex Of An Allosteric Lactate
Dehydrogenase From Bacillus Stearothermophilus At 2.5
Angstroms Resolution
pdb|1LDN|H Chain H, Structure Of A Ternary Complex Of An Allosteric Lactate
Dehydrogenase From Bacillus Stearothermophilus At 2.5
Angstroms Resolution
Length = 316
Score = 54.3 bits (129), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 37/119 (31%), Positives = 60/119 (50%), Gaps = 6/119 (5%)
Query: 116 DIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAE 175
D+V+I AG +KPG TR DL + N I +++ E + + + + +NPV+ I
Sbjct: 76 DLVVICAGANQKPGETRLDLVDKNIAIFRSIVESVMASGFQGLFLVATNPVD----ILTY 131
Query: 176 VFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQ 233
K +R++G T+LD R + E + P+ V ++G H G T LP+ SQ
Sbjct: 132 ATWKFSGLPHERVIGSGTILDTARFRFLLGEYFSVAPQNVHAYIIGEH-GDTELPVWSQ 189
>pdb|1LDB|A Chain A, Structure Determination And Refinement Of Bacillus
Stearothermophilus Lactate Dehydrogenase
pdb|1LDB|B Chain B, Structure Determination And Refinement Of Bacillus
Stearothermophilus Lactate Dehydrogenase
pdb|1LDB|C Chain C, Structure Determination And Refinement Of Bacillus
Stearothermophilus Lactate Dehydrogenase
pdb|1LDB|D Chain D, Structure Determination And Refinement Of Bacillus
Stearothermophilus Lactate Dehydrogenase
pdb|2LDB|A Chain A, Structure Determination And Refinement Of Bacillus
Stearothermophilus Lactate Dehydrogenase
pdb|2LDB|B Chain B, Structure Determination And Refinement Of Bacillus
Stearothermophilus Lactate Dehydrogenase
pdb|2LDB|C Chain C, Structure Determination And Refinement Of Bacillus
Stearothermophilus Lactate Dehydrogenase
pdb|2LDB|D Chain D, Structure Determination And Refinement Of Bacillus
Stearothermophilus Lactate Dehydrogenase
Length = 317
Score = 54.3 bits (129), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 37/119 (31%), Positives = 60/119 (50%), Gaps = 6/119 (5%)
Query: 116 DIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAE 175
D+V+I AG +KPG TR DL + N I +++ E + + + + +NPV+ I
Sbjct: 76 DLVVICAGANQKPGETRLDLVDKNIAIFRSIVESVMASGFQGLFLVATNPVD----ILTY 131
Query: 176 VFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQ 233
K +R++G T+LD R + E + P+ V ++G H G T LP+ SQ
Sbjct: 132 ATWKFSGLPHERVIGSGTILDTARFRFLLGEYFSVAPQNVHAYIIGEH-GDTELPVWSQ 189
>pdb|4MDH|A Chain A, Refined Crystal Structure Of Cytoplasmic Malate
Dehydrogenase At 2.5-Angstroms Resolution
pdb|4MDH|B Chain B, Refined Crystal Structure Of Cytoplasmic Malate
Dehydrogenase At 2.5-Angstroms Resolution
Length = 334
Score = 53.5 bits (127), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 61/245 (24%), Positives = 109/245 (44%), Gaps = 37/245 (15%)
Query: 53 GAAGGIGQPLAM-LMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDA 111
G+ G QP+ + L+ I P++ VL GV ++ +++ + + E A
Sbjct: 27 GSVFGKDQPIILVLLDITPMMGVLD--------GVLMELQDC-ALPLLKDVIATDKEEIA 77
Query: 112 LTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIA--KCCPKAI-VNLISNPVNS 168
+D+ I+ +PR+ GM R DL N I K C+G A K K++ V ++ NP N+
Sbjct: 78 FKDLDVAILVGSMPRRDGMERKDLLKANVKIFK--CQGAALDKYAKKSVKVIVVGNPANT 135
Query: 169 TVPIAAEVFKKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTIL 228
A+ K + + +T LD RA +A LG+ +V ++ G+ T
Sbjct: 136 NCLTAS---KSAPSIPKENFSCLTRLDHNRAKAQIALKLGVTSDDVKNVIIWGNHSSTQY 192
Query: 229 PLLSQVKPSCSLTPTEI--------------DYLTDRIQNGGTEVVEAK--TGAGSATLS 272
P ++ K L E+ +++T +Q G V++A+ + A SA +
Sbjct: 193 PDVNHAK--VKLQAKEVGVYEAVKDDSWLKGEFIT-TVQQRGAAVIKARKLSSAMSAAKA 249
Query: 273 MCRHM 277
+C H+
Sbjct: 250 ICDHV 254
>pdb|5MDH|A Chain A, Crystal Structure Of Ternary Complex Of Porcine
Cytoplasmic Malate Dehydrogenase Alpha-Ketomalonate And
Tnad At 2.4 Angstroms Resolution
pdb|5MDH|B Chain B, Crystal Structure Of Ternary Complex Of Porcine
Cytoplasmic Malate Dehydrogenase Alpha-Ketomalonate And
Tnad At 2.4 Angstroms Resolution
Length = 333
Score = 53.5 bits (127), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 61/245 (24%), Positives = 109/245 (44%), Gaps = 37/245 (15%)
Query: 53 GAAGGIGQPLAM-LMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDA 111
G+ G QP+ + L+ I P++ VL GV ++ +++ + + E A
Sbjct: 26 GSVFGKDQPIILVLLDITPMMGVLD--------GVLMELQDC-ALPLLKDVIATDKEEIA 76
Query: 112 LTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIA--KCCPKAI-VNLISNPVNS 168
+D+ I+ +PR+ GM R DL N I K C+G A K K++ V ++ NP N+
Sbjct: 77 FKDLDVAILVGSMPRRDGMERKDLLKANVKIFK--CQGAALDKYAKKSVKVIVVGNPANT 134
Query: 169 TVPIAAEVFKKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTIL 228
A+ K + + +T LD RA +A LG+ +V ++ G+ T
Sbjct: 135 NCLTAS---KSAPSIPKENFSCLTRLDHNRAKAQIALKLGVTSDDVKNVIIWGNHSSTQY 191
Query: 229 PLLSQVKPSCSLTPTEI--------------DYLTDRIQNGGTEVVEAK--TGAGSATLS 272
P ++ K L E+ +++T +Q G V++A+ + A SA +
Sbjct: 192 PDVNHAK--VKLQAKEVGVYEAVKDDSWLKGEFIT-TVQQRGAAVIKARKLSSAMSAAKA 248
Query: 273 MCRHM 277
+C H+
Sbjct: 249 ICDHV 253
>pdb|1BMD|A Chain A, Determinants Of Protein Thermostability Observed In The
1.9 Angstroms Crystal Structure Of Malate Dehydrogenase
From The Thermophilic Bacterium Thermus Flavus
pdb|1BMD|B Chain B, Determinants Of Protein Thermostability Observed In The
1.9 Angstroms Crystal Structure Of Malate Dehydrogenase
From The Thermophilic Bacterium Thermus Flavus
Length = 327
Score = 53.5 bits (127), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 56/213 (26%), Positives = 86/213 (40%), Gaps = 22/213 (10%)
Query: 48 KVAVLGAAGGIGQPL-------AMLMKINPLVSVLHLYDVVNT----PGVTADISHMDTN 96
+VAV GAAG IG L ML K P+ +L L ++ GV ++
Sbjct: 6 RVAVTGAAGQIGYSLLFRIAAGEMLGKDQPV--ILQLLEIPQAMKALEGVVMELEDC-AF 62
Query: 97 AVVRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPK 156
++ G + A D ++ PRK GM R DL +N I +A+ K
Sbjct: 63 PLLAGLEATDDPDVAFKDADYALLVGAAPRKAGMERRDLLQVNGKIFTEQGRALAEVAKK 122
Query: 157 AI-VNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVD 215
+ V ++ NP N+ IA +K +P+ +T LD RA +A+ G +
Sbjct: 123 DVKVLVVGNPANTNALIA---YKNAPGLNPRNFTAMTRLDHNRAKAQLAKKTGTGVDRIR 179
Query: 216 VPVVGGHAGVTILPLLSQV----KPSCSLTPTE 244
V G+ T+ P L +P+ L E
Sbjct: 180 RMTVWGNHSSTMFPDLFHAEVDGRPALELVDME 212
>pdb|1IZ9|A Chain A, Crystal Structure Of Malate Dehydrogenase From Thermus
Thermophilus Hb8
pdb|1IZ9|B Chain B, Crystal Structure Of Malate Dehydrogenase From Thermus
Thermophilus Hb8
pdb|1Y7T|A Chain A, Crystal Structure Of Nad(H)-Depenent Malate Dehydrogenase
Complexed With Nadph
pdb|1Y7T|B Chain B, Crystal Structure Of Nad(H)-Depenent Malate Dehydrogenase
Complexed With Nadph
pdb|2CVQ|A Chain A, Crystal Structure Of Nad(H)-Dependent Malate Dehydrogenase
Complexed With Nadph
pdb|2CVQ|B Chain B, Crystal Structure Of Nad(H)-Dependent Malate Dehydrogenase
Complexed With Nadph
Length = 327
Score = 53.5 bits (127), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 55/212 (25%), Positives = 84/212 (39%), Gaps = 20/212 (9%)
Query: 48 KVAVLGAAGGIGQPL-------AMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVR 100
+VAV GAAG IG L ML K P+ +L L ++ + +
Sbjct: 6 RVAVTGAAGQIGYSLLFRIAAGEMLGKDQPV--ILQLLEIPQAMKALEGVVMELEDCAFP 63
Query: 101 GFLGQQQLED---ALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKA 157
G + +D A D ++ PRK GM R DL +N I +A+ K
Sbjct: 64 LLAGLEATDDPKVAFKDADYALLVGAAPRKAGMERRDLLQVNGKIFTEQGRALAEVAKKD 123
Query: 158 I-VNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDV 216
+ V ++ NP N+ IA +K +P+ +T LD RA +A+ G +
Sbjct: 124 VKVLVVGNPANTNALIA---YKNAPGLNPRNFTAMTRLDHNRAKAQLAKKTGTGVDRIRR 180
Query: 217 PVVGGHAGVTILPLLSQV----KPSCSLTPTE 244
V G+ T+ P L +P+ L E
Sbjct: 181 MTVWGNHSSTMFPDLFHAEVDGRPALELVDME 212
>pdb|2V6B|A Chain A, Crystal Structure Of Lactate Dehydrogenase From
Deinococcus Radiodurans (Apo Form)
pdb|2V6B|B Chain B, Crystal Structure Of Lactate Dehydrogenase From
Deinococcus Radiodurans (Apo Form)
pdb|2V6B|C Chain C, Crystal Structure Of Lactate Dehydrogenase From
Deinococcus Radiodurans (Apo Form)
pdb|2V6B|D Chain D, Crystal Structure Of Lactate Dehydrogenase From
Deinococcus Radiodurans (Apo Form)
Length = 304
Score = 52.4 bits (124), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 39/130 (30%), Positives = 62/130 (47%), Gaps = 11/130 (8%)
Query: 104 GQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLIS 163
G +L DA +VI+ AG +KPG +R DL NA I + L I + P A++ + S
Sbjct: 61 GHSELADA----QVVILTAGANQKPGESRLDLLEKNADIFRELVPQITRAAPDAVLLVTS 116
Query: 164 NPVNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVDVPVVGGH 222
NPV+ +A ++ + ++G T+LD R +A+ G+D V+G H
Sbjct: 117 NPVDLLTDLATQLAPG------QPVIGSGTVLDSARFRHLMAQHAGVDGTHAHGYVLGEH 170
Query: 223 AGVTILPLLS 232
+L S
Sbjct: 171 GDSEVLAWSS 180
>pdb|1WZE|A Chain A, Structural Basis For Alteration Of Cofactor Specificity Of
Malate Dehydrogenase From Thermus Flavus
pdb|1WZE|B Chain B, Structural Basis For Alteration Of Cofactor Specificity Of
Malate Dehydrogenase From Thermus Flavus
pdb|1WZI|A Chain A, Structural Basis For Alteration Of Cofactor Specificity Of
Malate Dehydrogenase From Thermus Flavus
pdb|1WZI|B Chain B, Structural Basis For Alteration Of Cofactor Specificity Of
Malate Dehydrogenase From Thermus Flavus
Length = 327
Score = 52.0 bits (123), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 55/211 (26%), Positives = 86/211 (40%), Gaps = 18/211 (8%)
Query: 48 KVAVLGAAGGIGQPL-------AMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNA--V 98
+VAV GAAG IG L ML K P++ L L + + + ++ A +
Sbjct: 6 RVAVTGAAGQIGYSLLFRIAAGEMLGKDQPVILQL-LGSERSFQALEGVVMELEDCAFPL 64
Query: 99 VRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAI 158
+ G + A D ++ PRK GM R DL +N I +A+ K +
Sbjct: 65 LAGLEATDDPKVAFKDADYALLVGAAPRKAGMERRDLLQVNGKIFTEQGRALAEVAKKDV 124
Query: 159 -VNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVP 217
V ++ NP N+ IA +K +P+ +T LD RA +A+ G +
Sbjct: 125 KVLVVGNPANTNALIA---YKNAPGLNPRNFTAMTRLDHNRAKAQLAKKTGTGVDRIRRM 181
Query: 218 VVGGHAGVTILPLLSQV----KPSCSLTPTE 244
V G+ T+ P L +P+ L E
Sbjct: 182 TVWGNHSSTMFPDLFHAEVDGRPALELVDME 212
>pdb|1I10|A Chain A, Human Muscle L-Lactate Dehydrogenase M Chain, Ternary
Complex With Nadh And Oxamate
pdb|1I10|B Chain B, Human Muscle L-Lactate Dehydrogenase M Chain, Ternary
Complex With Nadh And Oxamate
pdb|1I10|C Chain C, Human Muscle L-Lactate Dehydrogenase M Chain, Ternary
Complex With Nadh And Oxamate
pdb|1I10|D Chain D, Human Muscle L-Lactate Dehydrogenase M Chain, Ternary
Complex With Nadh And Oxamate
pdb|1I10|E Chain E, Human Muscle L-Lactate Dehydrogenase M Chain, Ternary
Complex With Nadh And Oxamate
pdb|1I10|F Chain F, Human Muscle L-Lactate Dehydrogenase M Chain, Ternary
Complex With Nadh And Oxamate
pdb|1I10|G Chain G, Human Muscle L-Lactate Dehydrogenase M Chain, Ternary
Complex With Nadh And Oxamate
pdb|1I10|H Chain H, Human Muscle L-Lactate Dehydrogenase M Chain, Ternary
Complex With Nadh And Oxamate
Length = 331
Score = 52.0 bits (123), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 60/224 (26%), Positives = 98/224 (43%), Gaps = 19/224 (8%)
Query: 44 SPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP--GVTADISH----MDTNA 97
+P K+ V+G G +G A+ + + L L L DV+ G D+ H + T
Sbjct: 17 TPQNKITVVGV-GAVGMACAISILMKDLADELALVDVIEDKLKGEMMDLQHGSLFLRTPK 75
Query: 98 VVRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKA 157
+V G + + +VII AG ++ G +R +L N I K + + K P
Sbjct: 76 IVSG-----KDYNVTANSKLVIITAGARQQEGESRLNLVQRNVNIFKFIIPNVVKYSPNC 130
Query: 158 IVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVDV 216
+ ++SNPV+ I V K+ + R++G LD R + E LG+ P
Sbjct: 131 KLLIVSNPVD----ILTYVAWKISGFPKNRVIGSGCNLDSARFRYLMGERLGVHPLSCHG 186
Query: 217 PVVGGHAGVTILPLLSQVKPS-CSLTPTEIDYLTDRIQNGGTEV 259
V+G H G + +P+ S + + SL D TD+ + EV
Sbjct: 187 WVLGEH-GDSSVPVWSGMNVAGVSLKTLHPDLGTDKDKEQWKEV 229
>pdb|4AJP|A Chain A, Human Ldha In Complex With 2-((4-(4-((3-((2-Methyl-1,3-
Benzothiazol-6yl)amino)-3-Oxo-Propyl)amino)-4-Oxo-Butyl)
Phenyl)methyl)propanedioic Acid
pdb|4AJP|B Chain B, Human Ldha In Complex With 2-((4-(4-((3-((2-Methyl-1,3-
Benzothiazol-6yl)amino)-3-Oxo-Propyl)amino)-4-Oxo-Butyl)
Phenyl)methyl)propanedioic Acid
pdb|4AJP|C Chain C, Human Ldha In Complex With 2-((4-(4-((3-((2-Methyl-1,3-
Benzothiazol-6yl)amino)-3-Oxo-Propyl)amino)-4-Oxo-Butyl)
Phenyl)methyl)propanedioic Acid
pdb|4AJP|D Chain D, Human Ldha In Complex With 2-((4-(4-((3-((2-Methyl-1,3-
Benzothiazol-6yl)amino)-3-Oxo-Propyl)amino)-4-Oxo-Butyl)
Phenyl)methyl)propanedioic Acid
Length = 337
Score = 52.0 bits (123), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 60/224 (26%), Positives = 98/224 (43%), Gaps = 19/224 (8%)
Query: 44 SPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP--GVTADISH----MDTNA 97
+P K+ V+G G +G A+ + + L L L DV+ G D+ H + T
Sbjct: 17 TPQNKITVVGV-GAVGMACAISILMKDLADELALVDVIEDKLKGEMMDLQHGSLFLRTPK 75
Query: 98 VVRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKA 157
+V G + + +VII AG ++ G +R +L N I K + + K P
Sbjct: 76 IVSG-----KDYNVTANSKLVIITAGARQQEGESRLNLVQRNVNIFKFIIPNVVKYSPNC 130
Query: 158 IVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVDV 216
+ ++SNPV+ I V K+ + R++G LD R + E LG+ P
Sbjct: 131 KLLIVSNPVD----ILTYVAWKISGFPKNRVIGSGCNLDSARFRYLMGERLGVHPLSCHG 186
Query: 217 PVVGGHAGVTILPLLSQVKPS-CSLTPTEIDYLTDRIQNGGTEV 259
V+G H G + +P+ S + + SL D TD+ + EV
Sbjct: 187 WVLGEH-GDSSVPVWSGMNVAGVSLKTLHPDLGTDKDKEQWKEV 229
>pdb|1BDM|A Chain A, The Structure At 1.8 Angstroms Resolution Of A Single Site
Mutant (T189i) Of Malate Dehydrogenase From Thermus
Flavus With Increased Enzymatic Activity
pdb|1BDM|B Chain B, The Structure At 1.8 Angstroms Resolution Of A Single Site
Mutant (T189i) Of Malate Dehydrogenase From Thermus
Flavus With Increased Enzymatic Activity
Length = 327
Score = 51.2 bits (121), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 55/213 (25%), Positives = 85/213 (39%), Gaps = 22/213 (10%)
Query: 48 KVAVLGAAGGIGQPL-------AMLMKINPLVSVLHLYDVVNT----PGVTADISHMDTN 96
+VAV GAAG IG L ML K P+ +L L ++ GV ++
Sbjct: 6 RVAVTGAAGQIGYSLLFRIAAGEMLGKDQPV--ILQLLEIPQAMKALEGVVMELEDC-AF 62
Query: 97 AVVRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPK 156
++ G + A D ++ PRK GM R DL +N I +A+ K
Sbjct: 63 PLLAGLEATDDPDVAFKDADYALLVGAAPRKAGMERRDLLQVNGKIFTEQGRALAEVAKK 122
Query: 157 AI-VNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVD 215
+ V ++ NP N+ IA +K +P+ +T LD RA +A+ G +
Sbjct: 123 DVKVLVVGNPANTNALIA---YKNAPGLNPRNFTAMTRLDHNRAKAQLAKKTGTGVDRIR 179
Query: 216 VPVVGGHAGVTILPLLSQV----KPSCSLTPTE 244
V G+ + P L +P+ L E
Sbjct: 180 RMTVWGNHSSIMFPDLFHAEVDGRPALELVDME 212
>pdb|2V65|A Chain A, Apo Ldh From The Psychrophile C. Gunnari
pdb|2V65|B Chain B, Apo Ldh From The Psychrophile C. Gunnari
Length = 331
Score = 51.2 bits (121), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 37/119 (31%), Positives = 58/119 (48%), Gaps = 6/119 (5%)
Query: 117 IVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEV 176
+V++ AG ++ G +R +L N I K + I K P I+ ++SNPV+ I V
Sbjct: 90 VVVVTAGARQQEGESRLNLVQRNVNIFKFIIPNIVKYSPNCILMVVSNPVD----ILTYV 145
Query: 177 FKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQV 234
K+ + R++G T LD R + E L L P +VG H G + +P+ S V
Sbjct: 146 AWKLSGFPRHRVIGSGTNLDSARFRHLIGEKLHLHPSSCHAWIVGEH-GDSSVPVWSGV 203
>pdb|4AJ1|A Chain A, Rat Ldha In Complex With N-(2-(Methylamino)-1,3-
Benzothiazol-6-Yl)acetamide
pdb|4AJ1|B Chain B, Rat Ldha In Complex With N-(2-(Methylamino)-1,3-
Benzothiazol-6-Yl)acetamide
pdb|4AJ1|C Chain C, Rat Ldha In Complex With N-(2-(Methylamino)-1,3-
Benzothiazol-6-Yl)acetamide
pdb|4AJ1|D Chain D, Rat Ldha In Complex With N-(2-(Methylamino)-1,3-
Benzothiazol-6-Yl)acetamide
pdb|4AJ2|A Chain A, Rat Ldha In Complex With 5-(2-Chlorophenyl)-1h-Tetrazole
pdb|4AJ2|B Chain B, Rat Ldha In Complex With 5-(2-Chlorophenyl)-1h-Tetrazole
pdb|4AJ2|C Chain C, Rat Ldha In Complex With 5-(2-Chlorophenyl)-1h-Tetrazole
pdb|4AJ2|D Chain D, Rat Ldha In Complex With 5-(2-Chlorophenyl)-1h-Tetrazole
pdb|4AJE|A Chain A, Rat Ldha In Complex With 2-(4-Bromophenoxy)propanedioic
Acid
pdb|4AJE|B Chain B, Rat Ldha In Complex With 2-(4-Bromophenoxy)propanedioic
Acid
pdb|4AJE|C Chain C, Rat Ldha In Complex With 2-(4-Bromophenoxy)propanedioic
Acid
pdb|4AJE|D Chain D, Rat Ldha In Complex With 2-(4-Bromophenoxy)propanedioic
Acid
pdb|4AJH|A Chain A, Rat Ldha In Complex With
N-(2-Methyl-1,3-Benzothiazol-6-Yl)-3-Ureido- Propanamide
And 2-(4-Bromophenoxy)propanedioic Acid
pdb|4AJH|B Chain B, Rat Ldha In Complex With
N-(2-Methyl-1,3-Benzothiazol-6-Yl)-3-Ureido- Propanamide
And 2-(4-Bromophenoxy)propanedioic Acid
pdb|4AJH|C Chain C, Rat Ldha In Complex With
N-(2-Methyl-1,3-Benzothiazol-6-Yl)-3-Ureido- Propanamide
And 2-(4-Bromophenoxy)propanedioic Acid
pdb|4AJH|D Chain D, Rat Ldha In Complex With
N-(2-Methyl-1,3-Benzothiazol-6-Yl)-3-Ureido- Propanamide
And 2-(4-Bromophenoxy)propanedioic Acid
pdb|4AJI|A Chain A, Rat Ldha In Complex With 2-((3,4-Dimethoxyphenyl)methyl))
Propanedioic Acid
pdb|4AJI|B Chain B, Rat Ldha In Complex With 2-((3,4-Dimethoxyphenyl)methyl))
Propanedioic Acid
pdb|4AJI|C Chain C, Rat Ldha In Complex With 2-((3,4-Dimethoxyphenyl)methyl))
Propanedioic Acid
pdb|4AJI|D Chain D, Rat Ldha In Complex With 2-((3,4-Dimethoxyphenyl)methyl))
Propanedioic Acid
pdb|4AJJ|A Chain A, Rat Ldha In Complex With 2-((3,4-Dimethoxyphenyl)methyl))
Propanedioic Acid And
N-(2-Methyl-1,3-Benzothiazol-6-Yl)-3- Ureido-Propanamide
pdb|4AJJ|B Chain B, Rat Ldha In Complex With 2-((3,4-Dimethoxyphenyl)methyl))
Propanedioic Acid And
N-(2-Methyl-1,3-Benzothiazol-6-Yl)-3- Ureido-Propanamide
pdb|4AJJ|C Chain C, Rat Ldha In Complex With 2-((3,4-Dimethoxyphenyl)methyl))
Propanedioic Acid And
N-(2-Methyl-1,3-Benzothiazol-6-Yl)-3- Ureido-Propanamide
pdb|4AJJ|D Chain D, Rat Ldha In Complex With 2-((3,4-Dimethoxyphenyl)methyl))
Propanedioic Acid And
N-(2-Methyl-1,3-Benzothiazol-6-Yl)-3- Ureido-Propanamide
pdb|4AJK|A Chain A, Rat Ldha In Complex With
N-(2-(Methylamino)-1,3-Benzothiazol-6-Yl) Acetamide
pdb|4AJK|B Chain B, Rat Ldha In Complex With
N-(2-(Methylamino)-1,3-Benzothiazol-6-Yl) Acetamide
pdb|4AJK|C Chain C, Rat Ldha In Complex With
N-(2-(Methylamino)-1,3-Benzothiazol-6-Yl) Acetamide
pdb|4AJK|D Chain D, Rat Ldha In Complex With
N-(2-(Methylamino)-1,3-Benzothiazol-6-Yl) Acetamide
pdb|4AJL|A Chain A, Rat Ldha In Complex With
3-(Ethylcarbamoylamino)-N-(2-Methyl-1,3-
Benzothiazol-6-Yl)propanamide
pdb|4AJL|B Chain B, Rat Ldha In Complex With
3-(Ethylcarbamoylamino)-N-(2-Methyl-1,3-
Benzothiazol-6-Yl)propanamide
pdb|4AJL|C Chain C, Rat Ldha In Complex With
3-(Ethylcarbamoylamino)-N-(2-Methyl-1,3-
Benzothiazol-6-Yl)propanamide
pdb|4AJL|D Chain D, Rat Ldha In Complex With
3-(Ethylcarbamoylamino)-N-(2-Methyl-1,3-
Benzothiazol-6-Yl)propanamide
pdb|4AJN|A Chain A, Rat Ldha In Complex With 2-((4-(2-((3-((2-Methyl-1,3-
Benzothiazol-6-Yl)amino)-3-Oxo-
Propyl)carbamoylamino)ethyl) Phenyl)methyl)propanedioic
Acid
pdb|4AJN|B Chain B, Rat Ldha In Complex With 2-((4-(2-((3-((2-Methyl-1,3-
Benzothiazol-6-Yl)amino)-3-Oxo-
Propyl)carbamoylamino)ethyl) Phenyl)methyl)propanedioic
Acid
pdb|4AJN|C Chain C, Rat Ldha In Complex With 2-((4-(2-((3-((2-Methyl-1,3-
Benzothiazol-6-Yl)amino)-3-Oxo-
Propyl)carbamoylamino)ethyl) Phenyl)methyl)propanedioic
Acid
pdb|4AJN|D Chain D, Rat Ldha In Complex With 2-((4-(2-((3-((2-Methyl-1,3-
Benzothiazol-6-Yl)amino)-3-Oxo-
Propyl)carbamoylamino)ethyl) Phenyl)methyl)propanedioic
Acid
pdb|4AJO|A Chain A, Rat Ldha In Complex With 2-((4-(4-((3-((2-Methyl-1,3-
Benzothiazol-6yl)amino)-3-Oxo-Propyl)amino)-4-Oxo-Butyl)
Phenyl)methyl)propanedioic Acid
pdb|4AJO|B Chain B, Rat Ldha In Complex With 2-((4-(4-((3-((2-Methyl-1,3-
Benzothiazol-6yl)amino)-3-Oxo-Propyl)amino)-4-Oxo-Butyl)
Phenyl)methyl)propanedioic Acid
pdb|4AJO|C Chain C, Rat Ldha In Complex With 2-((4-(4-((3-((2-Methyl-1,3-
Benzothiazol-6yl)amino)-3-Oxo-Propyl)amino)-4-Oxo-Butyl)
Phenyl)methyl)propanedioic Acid
pdb|4AJO|D Chain D, Rat Ldha In Complex With 2-((4-(4-((3-((2-Methyl-1,3-
Benzothiazol-6yl)amino)-3-Oxo-Propyl)amino)-4-Oxo-Butyl)
Phenyl)methyl)propanedioic Acid
pdb|4AL4|A Chain A, Rat Ldha In Complex With
2-((4-(2-((3-((2-Methyl-1,3-Benzothiazol-6-
Yl)amino)3-Oxo-Propyl)carbamoylamino)ethoxy) Phenyl)
Methylpropanedioic Acid
pdb|4AL4|B Chain B, Rat Ldha In Complex With
2-((4-(2-((3-((2-Methyl-1,3-Benzothiazol-6-
Yl)amino)3-Oxo-Propyl)carbamoylamino)ethoxy) Phenyl)
Methylpropanedioic Acid
pdb|4AL4|C Chain C, Rat Ldha In Complex With
2-((4-(2-((3-((2-Methyl-1,3-Benzothiazol-6-
Yl)amino)3-Oxo-Propyl)carbamoylamino)ethoxy) Phenyl)
Methylpropanedioic Acid
pdb|4AL4|D Chain D, Rat Ldha In Complex With
2-((4-(2-((3-((2-Methyl-1,3-Benzothiazol-6-
Yl)amino)3-Oxo-Propyl)carbamoylamino)ethoxy) Phenyl)
Methylpropanedioic Acid
Length = 331
Score = 48.1 bits (113), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 53/197 (26%), Positives = 86/197 (43%), Gaps = 18/197 (9%)
Query: 45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP--GVTADISH----MDTNAV 98
P K+ V+G G +G A+ + + L L L DV+ G D+ H + T +
Sbjct: 18 PQNKITVVGV-GAVGMACAISILMKDLADELALVDVIEDKLKGEMMDLQHGSLFLKTPKI 76
Query: 99 VRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAI 158
V + +VII AG ++ G +R +L N I K + + K P+
Sbjct: 77 V-----SSKDYSVTANSKLVIITAGARQQEGESRLNLVQRNVNIFKFIIPNVVKYSPQCK 131
Query: 159 VNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVDVP 217
+ ++SNPV+ I V K+ + R++G LD R + E LG+ P
Sbjct: 132 LLIVSNPVD----ILTYVAWKISGFPKNRVIGSGCNLDSARFRYLMGERLGVHPLSCHGW 187
Query: 218 VVGGHAGVTILPLLSQV 234
V+G H G + +P+ S V
Sbjct: 188 VLGEH-GDSSVPVWSGV 203
>pdb|4AJ4|A Chain A, Rat Ldha In Complex With
4-((2-Allylsulfanyl-1,3-Benzothizol-6-Yl)
Amino)-4-Oxo-Butanoic Acid
pdb|4AJ4|B Chain B, Rat Ldha In Complex With
4-((2-Allylsulfanyl-1,3-Benzothizol-6-Yl)
Amino)-4-Oxo-Butanoic Acid
pdb|4AJ4|C Chain C, Rat Ldha In Complex With
4-((2-Allylsulfanyl-1,3-Benzothizol-6-Yl)
Amino)-4-Oxo-Butanoic Acid
pdb|4AJ4|D Chain D, Rat Ldha In Complex With
4-((2-Allylsulfanyl-1,3-Benzothizol-6-Yl)
Amino)-4-Oxo-Butanoic Acid
Length = 332
Score = 48.1 bits (113), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 53/197 (26%), Positives = 86/197 (43%), Gaps = 18/197 (9%)
Query: 45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP--GVTADISH----MDTNAV 98
P K+ V+G G +G A+ + + L L L DV+ G D+ H + T +
Sbjct: 19 PQNKITVVGV-GAVGMACAISILMKDLADELALVDVIEDKLKGEMMDLQHGSLFLKTPKI 77
Query: 99 VRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAI 158
V + +VII AG ++ G +R +L N I K + + K P+
Sbjct: 78 V-----SSKDYSVTANSKLVIITAGARQQEGESRLNLVQRNVNIFKFIIPNVVKYSPQCK 132
Query: 159 VNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVDVP 217
+ ++SNPV+ I V K+ + R++G LD R + E LG+ P
Sbjct: 133 LLIVSNPVD----ILTYVAWKISGFPKNRVIGSGCNLDSARFRYLMGERLGVHPLSCHGW 188
Query: 218 VVGGHAGVTILPLLSQV 234
V+G H G + +P+ S V
Sbjct: 189 VLGEH-GDSSVPVWSGV 204
>pdb|2LDX|A Chain A, Characterization Of The Antigenic Sites On The Refined 3-
Angstroms Resolution Structure Of Mouse Testicular
Lactate Dehydrogenase C4
pdb|2LDX|B Chain B, Characterization Of The Antigenic Sites On The Refined 3-
Angstroms Resolution Structure Of Mouse Testicular
Lactate Dehydrogenase C4
pdb|2LDX|C Chain C, Characterization Of The Antigenic Sites On The Refined 3-
Angstroms Resolution Structure Of Mouse Testicular
Lactate Dehydrogenase C4
pdb|2LDX|D Chain D, Characterization Of The Antigenic Sites On The Refined 3-
Angstroms Resolution Structure Of Mouse Testicular
Lactate Dehydrogenase C4
Length = 331
Score = 47.8 bits (112), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 37/119 (31%), Positives = 58/119 (48%), Gaps = 6/119 (5%)
Query: 117 IVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEV 176
+VII AG G TR DL N I+K + G+ + P + +++NPV+ I V
Sbjct: 90 LVIITAGARMVSGQTRLDLLQRNVAIMKAIVPGVIQNSPDCKIIVVTNPVD----ILTYV 145
Query: 177 FKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQV 234
K+ + R++G LD R + E LG++P V+G H G + +P+ S V
Sbjct: 146 VWKISGFPVGRVIGSGCNLDSARFRYLIGEKLGVNPTSCHGWVLGEH-GDSSVPIWSGV 203
>pdb|9LDT|A Chain A, Design And Synthesis Of New Enzymes Based On The Lactate
Dehydrogenase Framework
pdb|9LDT|B Chain B, Design And Synthesis Of New Enzymes Based On The Lactate
Dehydrogenase Framework
pdb|9LDB|A Chain A, Design And Synthesis Of New Enzymes Based On The Lactate
Dehydrogenase Framework
pdb|9LDB|B Chain B, Design And Synthesis Of New Enzymes Based On The Lactate
Dehydrogenase Framework
Length = 332
Score = 47.4 bits (111), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 52/197 (26%), Positives = 87/197 (44%), Gaps = 18/197 (9%)
Query: 45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP--GVTADISH----MDTNAV 98
P K+ V+G G +G A+ + + L + L DV+ G D+ H + T +
Sbjct: 19 PHNKITVVGV-GAVGMACAISILMKELADEIALVDVMEDKLKGEMMDLQHGSLFLRTPKI 77
Query: 99 VRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAI 158
V G + + +V+I AG ++ G +R +L N I K + I K P
Sbjct: 78 VSG-----KDYNVTANSRLVVITAGARQQEGESRLNLVQRNVNIFKFIIPNIVKYSPNCK 132
Query: 159 VNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVDVP 217
+ ++SNPV+ I V K+ + R++G LD R + E LG+ P
Sbjct: 133 LLVVSNPVD----ILTYVAWKISGFPKNRVIGSGCNLDSARFRYLMGERLGVHPLSCHGW 188
Query: 218 VVGGHAGVTILPLLSQV 234
++G H G + +P+ S V
Sbjct: 189 ILGEH-GDSSVPVWSGV 204
>pdb|1V6A|A Chain A, Crystal Structure Of L-Lactate Dehydrogenase From Cyprinus
Carpio
pdb|1V6A|B Chain B, Crystal Structure Of L-Lactate Dehydrogenase From Cyprinus
Carpio
Length = 332
Score = 47.4 bits (111), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 37/119 (31%), Positives = 58/119 (48%), Gaps = 6/119 (5%)
Query: 117 IVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEV 176
+V++ AG ++ G +R +L N I K + I K P I+ ++SNPV+ I V
Sbjct: 91 VVVVTAGARQQEGESRLNLVQRNVNIFKFIIPNIIKYSPNCILLVVSNPVD----ILTYV 146
Query: 177 FKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQV 234
K+ R++G T LD R + E LG+ P V+G H G + +P+ S V
Sbjct: 147 AWKLSGLPRNRVIGSGTNLDSARFRHLMGEKLGIHPSNCHGWVIGEH-GDSSVPVWSGV 204
>pdb|1I0Z|A Chain A, Human Heart L-Lactate Dehydrogenase H Chain, Ternary
Complex With Nadh And Oxamate
pdb|1I0Z|B Chain B, Human Heart L-Lactate Dehydrogenase H Chain, Ternary
Complex With Nadh And Oxamate
Length = 333
Score = 46.6 bits (109), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 33/112 (29%), Positives = 54/112 (48%), Gaps = 5/112 (4%)
Query: 117 IVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEV 176
IV++ AGV ++ G +R +L N + K + I K P I+ ++SNPV+ I V
Sbjct: 91 IVVVTAGVRQQEGESRLNLVQRNVNVFKFIIPQIVKYSPDCIIIVVSNPVD----ILTYV 146
Query: 177 FKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTI 227
K+ R++G LD R +AE LG+ P ++G H ++
Sbjct: 147 TWKLSGLPKHRVIGSGCNLDSARFRYLMAEKLGIHPSSCHGWILGEHGDSSV 198
>pdb|1T2F|A Chain A, Human B Lactate Dehydrogenase Complexed With Nad+ And 4-
Hydroxy-1,2,5-Oxadiazole-3-Carboxylic Acid
pdb|1T2F|B Chain B, Human B Lactate Dehydrogenase Complexed With Nad+ And 4-
Hydroxy-1,2,5-Oxadiazole-3-Carboxylic Acid
pdb|1T2F|C Chain C, Human B Lactate Dehydrogenase Complexed With Nad+ And 4-
Hydroxy-1,2,5-Oxadiazole-3-Carboxylic Acid
pdb|1T2F|D Chain D, Human B Lactate Dehydrogenase Complexed With Nad+ And 4-
Hydroxy-1,2,5-Oxadiazole-3-Carboxylic Acid
Length = 333
Score = 46.6 bits (109), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 33/112 (29%), Positives = 54/112 (48%), Gaps = 5/112 (4%)
Query: 117 IVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEV 176
IV++ AGV ++ G +R +L N + K + I K P I+ ++SNPV+ I V
Sbjct: 91 IVVVTAGVRQQEGESRLNLVQRNVNVFKFIIPQIVKYSPDCIIIVVSNPVD----ILTYV 146
Query: 177 FKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTI 227
K+ R++G LD R +AE LG+ P ++G H ++
Sbjct: 147 TWKLSGLPKHRVIGSGCNLDSARFRYLMAEKLGIHPSSCHGWILGEHGDSSV 198
>pdb|5LDH|A Chain A, Structure Of The Active Ternary Complex Of Pig Heart
Lactate Dehydrogenase With S-Lac-Nad At 2.7 Angstroms
Resolution
pdb|5LDH|B Chain B, Structure Of The Active Ternary Complex Of Pig Heart
Lactate Dehydrogenase With S-Lac-Nad At 2.7 Angstroms
Resolution
Length = 334
Score = 45.1 bits (105), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 53/112 (47%), Gaps = 5/112 (4%)
Query: 117 IVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEV 176
IV++ AGV ++ G +R +L N + K + I K P I+ ++SNPV+ I V
Sbjct: 92 IVVVTAGVRQQEGESRLNLVQRNVNVFKFIIPQIVKYSPNCIIIVVSNPVD----ILTYV 147
Query: 177 FKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTI 227
K+ R++G LD R + E LG+ P ++G H ++
Sbjct: 148 AWKLSGLPKHRVIGSGCNLDSARFRYLMGEKLGVHPSSCHGWILGEHGDSSV 199
>pdb|3H3F|A Chain A, Rabbit Muscle L-Lactate Dehydrogenase In Complex With Nadh
And Oxamate
pdb|3H3F|B Chain B, Rabbit Muscle L-Lactate Dehydrogenase In Complex With Nadh
And Oxamate
pdb|3H3F|C Chain C, Rabbit Muscle L-Lactate Dehydrogenase In Complex With Nadh
And Oxamate
pdb|3H3F|D Chain D, Rabbit Muscle L-Lactate Dehydrogenase In Complex With Nadh
And Oxamate
pdb|3H3F|E Chain E, Rabbit Muscle L-Lactate Dehydrogenase In Complex With Nadh
And Oxamate
pdb|3H3F|F Chain F, Rabbit Muscle L-Lactate Dehydrogenase In Complex With Nadh
And Oxamate
pdb|3H3F|G Chain G, Rabbit Muscle L-Lactate Dehydrogenase In Complex With Nadh
And Oxamate
pdb|3H3F|H Chain H, Rabbit Muscle L-Lactate Dehydrogenase In Complex With Nadh
And Oxamate
pdb|4I8X|A Chain A, Crystal Structure Of Rabbit Ldha In Complex With Ap27460
pdb|4I8X|B Chain B, Crystal Structure Of Rabbit Ldha In Complex With Ap27460
pdb|4I8X|C Chain C, Crystal Structure Of Rabbit Ldha In Complex With Ap27460
pdb|4I8X|D Chain D, Crystal Structure Of Rabbit Ldha In Complex With Ap27460
pdb|4I8X|E Chain E, Crystal Structure Of Rabbit Ldha In Complex With Ap27460
pdb|4I8X|F Chain F, Crystal Structure Of Rabbit Ldha In Complex With Ap27460
pdb|4I8X|G Chain G, Crystal Structure Of Rabbit Ldha In Complex With Ap27460
pdb|4I8X|H Chain H, Crystal Structure Of Rabbit Ldha In Complex With Ap27460
pdb|4I9H|A Chain A, Crystal Structure Of Rabbit Ldha In Complex With Ap28669
pdb|4I9H|B Chain B, Crystal Structure Of Rabbit Ldha In Complex With Ap28669
pdb|4I9H|C Chain C, Crystal Structure Of Rabbit Ldha In Complex With Ap28669
pdb|4I9H|D Chain D, Crystal Structure Of Rabbit Ldha In Complex With Ap28669
pdb|4I9H|E Chain E, Crystal Structure Of Rabbit Ldha In Complex With Ap28669
pdb|4I9H|F Chain F, Crystal Structure Of Rabbit Ldha In Complex With Ap28669
pdb|4I9H|G Chain G, Crystal Structure Of Rabbit Ldha In Complex With Ap28669
pdb|4I9H|H Chain H, Crystal Structure Of Rabbit Ldha In Complex With Ap28669
pdb|4I9N|A Chain A, Crystal Structure Of Rabbit Ldha In Complex With Ap28161
And Ap28122
pdb|4I9N|B Chain B, Crystal Structure Of Rabbit Ldha In Complex With Ap28161
And Ap28122
pdb|4I9N|C Chain C, Crystal Structure Of Rabbit Ldha In Complex With Ap28161
And Ap28122
pdb|4I9N|D Chain D, Crystal Structure Of Rabbit Ldha In Complex With Ap28161
And Ap28122
pdb|4I9N|E Chain E, Crystal Structure Of Rabbit Ldha In Complex With Ap28161
And Ap28122
pdb|4I9N|F Chain F, Crystal Structure Of Rabbit Ldha In Complex With Ap28161
And Ap28122
pdb|4I9N|G Chain G, Crystal Structure Of Rabbit Ldha In Complex With Ap28161
And Ap28122
pdb|4I9N|H Chain H, Crystal Structure Of Rabbit Ldha In Complex With Ap28161
And Ap28122
pdb|4I9U|A Chain A, Crystal Structure Of Rabbit Ldha In Complex With A
Fragment Inhibitor Ap26256
pdb|4I9U|B Chain B, Crystal Structure Of Rabbit Ldha In Complex With A
Fragment Inhibitor Ap26256
pdb|4I9U|C Chain C, Crystal Structure Of Rabbit Ldha In Complex With A
Fragment Inhibitor Ap26256
pdb|4I9U|D Chain D, Crystal Structure Of Rabbit Ldha In Complex With A
Fragment Inhibitor Ap26256
pdb|4I9U|E Chain E, Crystal Structure Of Rabbit Ldha In Complex With A
Fragment Inhibitor Ap26256
pdb|4I9U|F Chain F, Crystal Structure Of Rabbit Ldha In Complex With A
Fragment Inhibitor Ap26256
pdb|4I9U|G Chain G, Crystal Structure Of Rabbit Ldha In Complex With A
Fragment Inhibitor Ap26256
pdb|4I9U|H Chain H, Crystal Structure Of Rabbit Ldha In Complex With A
Fragment Inhibitor Ap26256
Length = 331
Score = 44.7 bits (104), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 51/195 (26%), Positives = 84/195 (43%), Gaps = 18/195 (9%)
Query: 45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP--GVTADISH----MDTNAV 98
P K+ V+G G +G A+ + + L L L DV+ G D+ H + T +
Sbjct: 18 PQNKITVVGV-GAVGMACAISILMKDLADELALVDVMEDKLKGEMMDLQHGSLFLRTPKI 76
Query: 99 VRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAI 158
V G + +VII AG ++ G +R +L N I K + + K P
Sbjct: 77 VSG-----KDYSVTANSKLVIITAGARQQEGESRLNLVQRNVNIFKFIIPNVVKYSPHCK 131
Query: 159 VNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVDVP 217
+ ++SNPV+ I V K+ + R++G LD R + E LG+
Sbjct: 132 LLVVSNPVD----ILTYVAWKISGFPKNRVIGSGCNLDSARFRYLMGERLGVHALSCHGW 187
Query: 218 VVGGHAGVTILPLLS 232
++G H G + +P+ S
Sbjct: 188 ILGEH-GDSSVPVWS 201
>pdb|6LDH|A Chain A, Refined Crystal Structure Of Dogfish M4 Apo-Lactate
Dehydrogenase
pdb|8LDH|A Chain A, Refined Crystal Structure Of Dogfish M4 Apo-Lactate
Dehydrogenase
Length = 330
Score = 44.3 bits (103), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 48/182 (26%), Positives = 78/182 (42%), Gaps = 17/182 (9%)
Query: 48 KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP--GVTADISH----MDTNAVVRG 101
K+ V+G G +G A+ + + L + L DV+ G D+ H + T +V G
Sbjct: 23 KITVVGV-GAVGMACAISILMKDLADEVALVDVMEDKLKGEMMDLQHGSLFLHTAKIVSG 81
Query: 102 FLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNL 161
+ G +V+I AG ++ G +R +L N I K + I K P I+ +
Sbjct: 82 -----KDYSVSAGSKLVVITAGARQQEGESRLNLVQRNVNIFKFIIPNIVKHSPDCIILV 136
Query: 162 ISNPVNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVDVPVVG 220
+SNPV+ +A K+ R++G LD R + E LG+ V+G
Sbjct: 137 VSNPVDVLTYVAW----KLSGLPMHRIIGSGCNLDSARFRYLMGERLGVHSCSCHGWVIG 192
Query: 221 GH 222
H
Sbjct: 193 EH 194
>pdb|1LDM|A Chain A, Refined Crystal Structure Of Dogfish M4 Apo-Lactate
Dehydrogenase
Length = 329
Score = 44.3 bits (103), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 48/182 (26%), Positives = 78/182 (42%), Gaps = 17/182 (9%)
Query: 48 KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP--GVTADISH----MDTNAVVRG 101
K+ V+G G +G A+ + + L + L DV+ G D+ H + T +V G
Sbjct: 22 KITVVGV-GAVGMACAISILMKDLADEVALVDVMEDKLKGEMMDLQHGSLFLHTAKIVSG 80
Query: 102 FLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNL 161
+ G +V+I AG ++ G +R +L N I K + I K P I+ +
Sbjct: 81 -----KDYSVSAGSKLVVITAGARQQEGESRLNLVQRNVNIFKFIIPNIVKHSPDCIILV 135
Query: 162 ISNPVNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVDVPVVG 220
+SNPV+ +A K+ R++G LD R + E LG+ V+G
Sbjct: 136 VSNPVDVLTYVAW----KLSGLPMHRIIGSGCNLDSARFRYLMGERLGVHSCSCHGWVIG 191
Query: 221 GH 222
H
Sbjct: 192 EH 193
>pdb|1CIV|A Chain A, Chloroplast Nadp-Dependent Malate Dehydrogenase From
Flaveria Bidentis
Length = 385
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/112 (29%), Positives = 46/112 (41%), Gaps = 4/112 (3%)
Query: 125 PRKPGMTRDDLFNINAGIVKTLCEGI-AKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTY 183
PR PGM R DL +IN I + + A P V ++ NP N+ I K
Sbjct: 129 PRGPGMERADLLDINGQIFAEQGKALNAVASPNVKVMVVGNPCNTNALIC---LKNAPNI 185
Query: 184 DPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVK 235
PK +T LD RA +A G+ +V + G+ T +P K
Sbjct: 186 PPKNFHALTRLDENRAKCQLALKAGVFYDKVSNVTIWGNHSTTQVPDFLNAK 237
>pdb|3D5T|A Chain A, Crystal Structure Of Malate Dehydrogenase From
Burkholderia Pseudomallei
pdb|3D5T|B Chain B, Crystal Structure Of Malate Dehydrogenase From
Burkholderia Pseudomallei
pdb|3D5T|C Chain C, Crystal Structure Of Malate Dehydrogenase From
Burkholderia Pseudomallei
pdb|3D5T|D Chain D, Crystal Structure Of Malate Dehydrogenase From
Burkholderia Pseudomallei
Length = 331
Score = 36.6 bits (83), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 50/197 (25%), Positives = 79/197 (40%), Gaps = 16/197 (8%)
Query: 44 SPGFKVAVLGAAGGIGQPL-------AMLMKINPLVSVLHLYDVVNT-PGVTADISHMDT 95
P +VAV GAAG I L +L K P+ +L L D+ V + +D
Sbjct: 7 KPAKRVAVTGAAGQIAYSLLFRIANGDLLGKDQPV--ILQLLDLPQAQAAVKGVVMELDD 64
Query: 96 NA--VVRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKC 153
A ++ G + + A D+ ++ PR GM R DL + NA I + +
Sbjct: 65 CAFPLLAGVVITDDPKVAFKDADVALLVGARPRSKGMERKDLLSANAEIFTVQGAALNEV 124
Query: 154 CPKAI-VNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPR 212
+ + V ++ NP N+ IA K K + LD RA + +A G
Sbjct: 125 ASRDVKVLVVGNPANTNAYIA---MKSAPDLPKKNFTAMLRLDHNRALSQLAAKSGKPVA 181
Query: 213 EVDVPVVGGHAGVTILP 229
++ V G+ T+ P
Sbjct: 182 SIEKLAVWGNHSPTMYP 198
>pdb|1HYH|A Chain A, Crystal Structure Of L-2-hydroxyisocaproate Dehydrogenase
From Lactobacillus Confusus At 2.2 Angstroms
Resolution-an Example Of Strong Asymmetry Between
Subunits
pdb|1HYH|B Chain B, Crystal Structure Of L-2-hydroxyisocaproate Dehydrogenase
From Lactobacillus Confusus At 2.2 Angstroms
Resolution-an Example Of Strong Asymmetry Between
Subunits
pdb|1HYH|C Chain C, Crystal Structure Of L-2-hydroxyisocaproate Dehydrogenase
From Lactobacillus Confusus At 2.2 Angstroms
Resolution-an Example Of Strong Asymmetry Between
Subunits
pdb|1HYH|D Chain D, Crystal Structure Of L-2-hydroxyisocaproate Dehydrogenase
From Lactobacillus Confusus At 2.2 Angstroms
Resolution-an Example Of Strong Asymmetry Between
Subunits
Length = 309
Score = 35.8 bits (81), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 30/117 (25%), Positives = 52/117 (44%), Gaps = 9/117 (7%)
Query: 111 ALTGMDIVIIPAGVPR----KPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPV 166
AL D+VI G + P R + +V+++ + + ++ +ISNPV
Sbjct: 66 ALADADVVISTLGNIKLQQDNPTGDRFAELKFTSSMVQSVGTNLKESGFHGVLVVISNPV 125
Query: 167 NSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVDVPVVGGH 222
+ + +F+ V + +++G T+LD R V E LDPR V +G H
Sbjct: 126 D----VITALFQHVTGFPAHKVIGTGTLLDTARMQRAVGEAFDLDPRSVSGYNLGEH 178
>pdb|7MDH|A Chain A, Structural Basis For Light Acitvation Of A Chloroplast
Enzyme. The Structure Of Sorghum Nadp-Malate
Dehydrogenase In Its Oxidized Form
pdb|7MDH|B Chain B, Structural Basis For Light Acitvation Of A Chloroplast
Enzyme. The Structure Of Sorghum Nadp-Malate
Dehydrogenase In Its Oxidized Form
pdb|7MDH|C Chain C, Structural Basis For Light Acitvation Of A Chloroplast
Enzyme. The Structure Of Sorghum Nadp-Malate
Dehydrogenase In Its Oxidized Form
pdb|7MDH|D Chain D, Structural Basis For Light Acitvation Of A Chloroplast
Enzyme. The Structure Of Sorghum Nadp-Malate
Dehydrogenase In Its Oxidized Form
Length = 375
Score = 32.7 bits (73), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 31/127 (24%), Positives = 49/127 (38%), Gaps = 4/127 (3%)
Query: 110 DALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAI-VNLISNPVNS 168
+ +D ++ PR PGM R L +IN I + + K + V ++ NP N+
Sbjct: 104 EVFEDVDWALLIGAKPRGPGMERAALLDINGQIFADQGKALNAVASKNVKVLVVGNPCNT 163
Query: 169 TVPIAAEVFKKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTIL 228
I K K +T LD RA +A G+ +V + G+ T +
Sbjct: 164 NALI---CLKNAPDIPAKNFHALTRLDENRAKCQLALKAGVFYDKVSNVTIWGNHSTTQV 220
Query: 229 PLLSQVK 235
P K
Sbjct: 221 PDFLNAK 227
>pdb|3U95|A Chain A, Crystal Structure Of A Putative Alpha-Glucosidase From
Thermotoga Neapolitana
pdb|3U95|B Chain B, Crystal Structure Of A Putative Alpha-Glucosidase From
Thermotoga Neapolitana
pdb|3U95|C Chain C, Crystal Structure Of A Putative Alpha-Glucosidase From
Thermotoga Neapolitana
pdb|3U95|D Chain D, Crystal Structure Of A Putative Alpha-Glucosidase From
Thermotoga Neapolitana
pdb|3U95|E Chain E, Crystal Structure Of A Putative Alpha-Glucosidase From
Thermotoga Neapolitana
pdb|3U95|F Chain F, Crystal Structure Of A Putative Alpha-Glucosidase From
Thermotoga Neapolitana
Length = 477
Score = 32.3 bits (72), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 38/85 (44%), Gaps = 15/85 (17%)
Query: 146 LCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGVTMLDVVRANTFVAE 205
+ E + K PKA + +NPV E+ + V +R G ++ V E
Sbjct: 142 IAEKMKKMAPKAYLMQTANPV-------FEITQAV-----RRWTGANIIGFCHGVAGVYE 189
Query: 206 V---LGLDPREVDVPVVGGHAGVTI 227
V LGLDP EVD V G + G+ +
Sbjct: 190 VFERLGLDPEEVDWQVAGVNHGIWL 214
>pdb|3P2Y|A Chain A, Crystal Structure Of Alanine DehydrogenasePYRIDINE
NUCLEOTIDE Transhydrogenase From Mycobacterium Smegmatis
Length = 381
Score = 31.2 bits (69), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 15/24 (62%), Positives = 17/24 (70%)
Query: 105 QQQLEDALTGMDIVIIPAGVPRKP 128
QQ LEDA+T DIVI A VP +P
Sbjct: 256 QQALEDAITKFDIVITTALVPGRP 279
>pdb|1GEG|A Chain A, Cryatal Structure Analysis Of Meso-2,3-Butanediol
Dehydrogenase
pdb|1GEG|B Chain B, Cryatal Structure Analysis Of Meso-2,3-Butanediol
Dehydrogenase
pdb|1GEG|C Chain C, Cryatal Structure Analysis Of Meso-2,3-Butanediol
Dehydrogenase
pdb|1GEG|D Chain D, Cryatal Structure Analysis Of Meso-2,3-Butanediol
Dehydrogenase
pdb|1GEG|E Chain E, Cryatal Structure Analysis Of Meso-2,3-Butanediol
Dehydrogenase
pdb|1GEG|F Chain F, Cryatal Structure Analysis Of Meso-2,3-Butanediol
Dehydrogenase
pdb|1GEG|G Chain G, Cryatal Structure Analysis Of Meso-2,3-Butanediol
Dehydrogenase
pdb|1GEG|H Chain H, Cryatal Structure Analysis Of Meso-2,3-Butanediol
Dehydrogenase
Length = 256
Score = 30.8 bits (68), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 33/119 (27%), Positives = 53/119 (44%), Gaps = 19/119 (15%)
Query: 48 KVA-VLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVV------- 99
KVA V GA GIG+ +A+ + + + Y+ V ++I+ +AV
Sbjct: 3 KVALVTGAGQGIGKAIALRLVKDGFAVAIADYNDATAKAVASEINQAGGHAVAVKVDVSD 62
Query: 100 --RGFLGQQQLEDALTGMDIVIIPAGV-PRKPGMT-----RDDLFNINAGIVKTLCEGI 150
+ F +Q L G D+++ AGV P P + D ++NIN VK + GI
Sbjct: 63 RDQVFAAVEQARKTLGGFDVIVNNAGVAPSTPIESITPEIVDKVYNIN---VKGVIWGI 118
>pdb|3GRP|A Chain A, 2.1 Angstrom Crystal Structure Of
3-Ketoacyl-(Acyl-Carrier-Protein) Reductase From
Bartonella Henselae
pdb|3GRP|B Chain B, 2.1 Angstrom Crystal Structure Of
3-Ketoacyl-(Acyl-Carrier-Protein) Reductase From
Bartonella Henselae
pdb|3GRP|C Chain C, 2.1 Angstrom Crystal Structure Of
3-Ketoacyl-(Acyl-Carrier-Protein) Reductase From
Bartonella Henselae
pdb|3GRP|D Chain D, 2.1 Angstrom Crystal Structure Of
3-Ketoacyl-(Acyl-Carrier-Protein) Reductase From
Bartonella Henselae
Length = 266
Score = 29.3 bits (64), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 30/113 (26%), Positives = 44/113 (38%), Gaps = 12/113 (10%)
Query: 46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISH----MDTNAVVRG 101
G K V GA GGIG+ +A + LH + AD+ N R
Sbjct: 27 GRKALVTGATGGIGEAIARCFHAQGAIVGLHGTREDKLKEIAADLGKDVFVFSANLSDRK 86
Query: 102 FLGQ--QQLEDALTGMDIVIIPAGVPRKPGMTR------DDLFNINAGIVKTL 146
+ Q + E + G+DI++ AG+ R R DD+ +N TL
Sbjct: 87 SIKQLAEVAEREMEGIDILVNNAGITRDGLFVRMQDQDWDDVLAVNLTAASTL 139
>pdb|1YS4|A Chain A, Structure Of Aspartate-Semialdehyde Dehydrogenase From
Methanococcus Jannaschii
pdb|1YS4|B Chain B, Structure Of Aspartate-Semialdehyde Dehydrogenase From
Methanococcus Jannaschii
Length = 354
Score = 28.9 bits (63), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 19/38 (50%)
Query: 40 AKGGSPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHL 77
+KG KV VLGA G +GQ L+ +P + L
Sbjct: 2 SKGEKXKIKVGVLGATGSVGQRFVQLLADHPXFELTAL 39
>pdb|3ENN|A Chain A, 2.1a Crystal Structure Of GlucoseRIBITOL DEHYDROGENASE
FROM BRUCELLA Melitensis (P43212)
pdb|3ENN|B Chain B, 2.1a Crystal Structure Of GlucoseRIBITOL DEHYDROGENASE
FROM BRUCELLA Melitensis (P43212)
pdb|3ENN|C Chain C, 2.1a Crystal Structure Of GlucoseRIBITOL DEHYDROGENASE
FROM BRUCELLA Melitensis (P43212)
pdb|3ENN|D Chain D, 2.1a Crystal Structure Of GlucoseRIBITOL DEHYDROGENASE
FROM BRUCELLA Melitensis (P43212)
Length = 249
Score = 28.9 bits (63), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 46/99 (46%), Gaps = 16/99 (16%)
Query: 46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADI--------SHMDTNA 97
G K V GA GG+G+ +A + + LH + A++ +++
Sbjct: 10 GRKALVTGATGGLGEAIARALHAQGAIVGLHGTREEKLKELAAELGERIFVFPANLSDRE 69
Query: 98 VVRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLF 136
V+ LGQ+ E+ + G+DI++ AG+ TRD LF
Sbjct: 70 AVKA-LGQKA-EEEMGGVDILVNNAGI------TRDGLF 100
>pdb|4DX1|A Chain A, Crystal Structure Of The Human Trpv4 Ankyrin Repeat Domain
pdb|4DX1|B Chain B, Crystal Structure Of The Human Trpv4 Ankyrin Repeat Domain
pdb|4DX2|A Chain A, Crystal Structure Of The Human Trpv4 Ankyrin Repeat Domain
pdb|4DX2|B Chain B, Crystal Structure Of The Human Trpv4 Ankyrin Repeat Domain
Length = 259
Score = 28.9 bits (63), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
Query: 153 CCPKAIVNLISNPVNSTVPIAAEVFKKVGT 182
C PKA++NL SN N T+P+ ++ ++ G
Sbjct: 47 CLPKALLNL-SNGRNDTIPVLLDIAERTGN 75
>pdb|3EMK|A Chain A, 2.5a Crystal Structure Of GlucoseRIBITOL DEHYDROGENASE
From Brucella Melitensis
pdb|3EMK|B Chain B, 2.5a Crystal Structure Of GlucoseRIBITOL DEHYDROGENASE
From Brucella Melitensis
pdb|3EMK|C Chain C, 2.5a Crystal Structure Of GlucoseRIBITOL DEHYDROGENASE
From Brucella Melitensis
pdb|3EMK|D Chain D, 2.5a Crystal Structure Of GlucoseRIBITOL DEHYDROGENASE
From Brucella Melitensis
Length = 246
Score = 28.9 bits (63), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 46/99 (46%), Gaps = 16/99 (16%)
Query: 46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADI--------SHMDTNA 97
G K V GA GG+G+ +A + + LH + A++ +++
Sbjct: 7 GRKALVTGATGGLGEAIARALHAQGAIVGLHGTREEKLKELAAELGERIFVFPANLSDRE 66
Query: 98 VVRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLF 136
V+ LGQ+ E+ + G+DI++ AG+ TRD LF
Sbjct: 67 AVKA-LGQKA-EEEMGGVDILVNNAGI------TRDGLF 97
>pdb|4A27|A Chain A, Crystal Structure Of Human Synaptic Vesicle Membrane
Protein Vat-1 Homolog-Like Protein
pdb|4A27|B Chain B, Crystal Structure Of Human Synaptic Vesicle Membrane
Protein Vat-1 Homolog-Like Protein
Length = 349
Score = 27.7 bits (60), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
Query: 46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHM-DTNA 97
G V V A GG+GQ +A L P V+V + ++H+ D NA
Sbjct: 143 GMSVLVHSAGGGVGQAVAQLCSTVPNVTVFGTASTFKHEAIKDSVTHLFDRNA 195
>pdb|2NVK|X Chain X, Crystal Structure Of Thioredoxin Reductase From Drosophila
Melanogaster
Length = 488
Score = 27.3 bits (59), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 23/49 (46%), Gaps = 8/49 (16%)
Query: 109 EDALTGMDIVIIPAGVPRKP--------GMTRDDLFNINAGIVKTLCEG 149
E +T VI G PR P G+T DDLF+++ KTL G
Sbjct: 146 ERTITAQTFVIAVGGRPRYPDIPGAVEYGITSDDLFSLDREPGKTLVVG 194
>pdb|3DH9|A Chain A, Crystal Structure Of Drosophila Thioredoxin Reductase,
Wild-Type
pdb|3DH9|B Chain B, Crystal Structure Of Drosophila Thioredoxin Reductase,
Wild-Type
Length = 482
Score = 27.3 bits (59), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 23/49 (46%), Gaps = 8/49 (16%)
Query: 109 EDALTGMDIVIIPAGVPRKP--------GMTRDDLFNINAGIVKTLCEG 149
E +T VI G PR P G+T DDLF+++ KTL G
Sbjct: 142 ERTITAQTFVIAVGGRPRYPDIPGAVEYGITSDDLFSLDREPGKTLVVG 190
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.137 0.399
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,627,374
Number of Sequences: 62578
Number of extensions: 362268
Number of successful extensions: 1181
Number of sequences better than 100.0: 104
Number of HSP's better than 100.0 without gapping: 82
Number of HSP's successfully gapped in prelim test: 22
Number of HSP's that attempted gapping in prelim test: 1012
Number of HSP's gapped (non-prelim): 105
length of query: 289
length of database: 14,973,337
effective HSP length: 98
effective length of query: 191
effective length of database: 8,840,693
effective search space: 1688572363
effective search space used: 1688572363
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.3 bits)