Query 022947
Match_columns 289
No_of_seqs 238 out of 1711
Neff 7.2
Searched_HMMs 46136
Date Fri Mar 29 07:19:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022947.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/022947hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd01337 MDH_glyoxysomal_mitoch 100.0 2.1E-59 4.5E-64 434.5 25.5 240 47-287 1-241 (310)
2 TIGR01772 MDH_euk_gproteo mala 100.0 6.5E-58 1.4E-62 425.1 25.4 239 48-286 1-239 (312)
3 COG0039 Mdh Malate/lactate deh 100.0 9.1E-58 2E-62 420.5 23.3 233 47-289 1-246 (313)
4 PLN00106 malate dehydrogenase 100.0 2.3E-56 5.1E-61 416.2 28.5 252 36-287 8-259 (323)
5 cd05290 LDH_3 A subgroup of L- 100.0 2.9E-55 6.4E-60 407.0 24.4 230 48-289 1-248 (307)
6 KOG1495 Lactate dehydrogenase 100.0 8.5E-55 1.8E-59 386.0 22.5 230 46-288 20-267 (332)
7 cd05293 LDH_1 A subgroup of L- 100.0 6.2E-54 1.3E-58 399.1 24.0 234 45-289 2-251 (312)
8 PTZ00325 malate dehydrogenase; 100.0 1.5E-53 3.3E-58 397.0 26.5 242 44-287 6-247 (321)
9 PLN02602 lactate dehydrogenase 100.0 4.2E-53 9.1E-58 398.2 24.6 232 47-289 38-285 (350)
10 TIGR01759 MalateDH-SF1 malate 100.0 3E-53 6.5E-58 395.8 23.1 234 44-288 1-256 (323)
11 PRK05086 malate dehydrogenase; 100.0 5.8E-52 1.3E-56 386.0 25.8 239 47-287 1-241 (312)
12 PRK05442 malate dehydrogenase; 100.0 1.7E-52 3.6E-57 391.2 21.8 233 44-287 2-256 (326)
13 TIGR01771 L-LDH-NAD L-lactate 100.0 1.6E-52 3.5E-57 387.6 20.8 227 51-289 1-243 (299)
14 PRK00066 ldh L-lactate dehydro 100.0 2E-51 4.3E-56 382.9 24.4 232 45-288 5-251 (315)
15 KOG1494 NAD-dependent malate d 100.0 1.9E-51 4.1E-56 366.2 22.2 266 9-286 3-269 (345)
16 PLN00112 malate dehydrogenase 100.0 1E-50 2.3E-55 390.2 23.6 238 40-288 94-355 (444)
17 cd00704 MDH Malate dehydrogena 100.0 6.8E-51 1.5E-55 380.2 21.3 231 48-289 2-257 (323)
18 TIGR01757 Malate-DH_plant mala 100.0 2.1E-50 4.6E-55 382.8 23.4 238 40-288 38-299 (387)
19 cd05291 HicDH_like L-2-hydroxy 100.0 2.9E-50 6.2E-55 373.9 23.3 231 47-289 1-246 (306)
20 TIGR01763 MalateDH_bact malate 100.0 3.6E-50 7.7E-55 373.1 23.6 231 47-289 2-244 (305)
21 cd01338 MDH_choloroplast_like 100.0 3.6E-50 7.7E-55 375.2 22.6 233 45-288 1-255 (322)
22 PTZ00082 L-lactate dehydrogena 100.0 1.6E-49 3.5E-54 370.9 25.5 235 45-289 5-259 (321)
23 PTZ00117 malate dehydrogenase; 100.0 1.9E-49 4E-54 370.4 25.8 235 45-289 4-253 (319)
24 cd00300 LDH_like L-lactate deh 100.0 1.4E-49 3.1E-54 368.3 23.1 230 49-289 1-241 (300)
25 TIGR01758 MDH_euk_cyt malate d 100.0 9.3E-49 2E-53 366.0 22.7 233 48-288 1-258 (324)
26 cd05292 LDH_2 A subgroup of L- 100.0 1.9E-48 4E-53 362.1 24.1 231 47-289 1-247 (308)
27 cd05294 LDH-like_MDH_nadp A la 100.0 3.2E-47 7E-52 353.9 24.3 233 47-289 1-247 (309)
28 cd01336 MDH_cytoplasmic_cytoso 100.0 1.5E-47 3.3E-52 358.1 21.9 233 45-288 1-259 (325)
29 cd01339 LDH-like_MDH L-lactate 100.0 1.1E-46 2.5E-51 348.8 23.5 231 49-289 1-241 (300)
30 PRK06223 malate dehydrogenase; 100.0 2.4E-46 5.2E-51 347.3 24.4 234 46-289 2-245 (307)
31 cd05295 MDH_like Malate dehydr 100.0 1.1E-45 2.3E-50 355.5 19.0 232 43-288 120-385 (452)
32 PLN00135 malate dehydrogenase 100.0 4E-45 8.6E-50 338.9 20.1 204 74-287 15-238 (309)
33 TIGR01756 LDH_protist lactate 100.0 1E-43 2.2E-48 330.2 19.9 205 74-287 17-239 (313)
34 cd00650 LDH_MDH_like NAD-depen 100.0 3.9E-41 8.4E-46 306.3 21.2 197 49-288 1-202 (263)
35 KOG1496 Malate dehydrogenase [ 100.0 2.3E-36 5E-41 264.8 13.7 237 44-287 2-260 (332)
36 PF00056 Ldh_1_N: lactate/mala 100.0 7.6E-34 1.6E-38 235.9 13.0 139 47-190 1-141 (141)
37 PRK15076 alpha-galactosidase; 99.9 3.2E-25 7E-30 214.6 13.8 166 46-224 1-200 (431)
38 cd05197 GH4_glycoside_hydrolas 99.9 1.4E-24 3E-29 209.7 16.5 176 47-237 1-206 (425)
39 cd05296 GH4_P_beta_glucosidase 99.9 3.8E-24 8.3E-29 206.3 15.4 167 47-224 1-198 (419)
40 cd05297 GH4_alpha_glucosidase_ 99.9 2.3E-21 4.9E-26 187.7 15.9 168 47-224 1-198 (423)
41 PF02866 Ldh_1_C: lactate/mala 99.9 1.8E-21 3.8E-26 166.9 9.1 94 192-288 1-105 (174)
42 cd05298 GH4_GlvA_pagL_like Gly 99.8 3.5E-20 7.6E-25 179.6 16.5 168 47-224 1-197 (437)
43 PF02056 Glyco_hydro_4: Family 99.8 8E-19 1.7E-23 151.1 14.1 152 48-209 1-183 (183)
44 COG1486 CelF Alpha-galactosida 99.8 9.4E-19 2E-23 167.3 15.1 170 45-224 2-201 (442)
45 COG1004 Ugd Predicted UDP-gluc 99.0 7.2E-09 1.6E-13 98.2 16.0 115 47-173 1-131 (414)
46 COG1250 FadB 3-hydroxyacyl-CoA 99.0 6.3E-09 1.4E-13 96.6 12.4 140 46-211 3-178 (307)
47 PF02737 3HCDH_N: 3-hydroxyacy 99.0 2.7E-09 5.9E-14 92.0 9.2 117 48-192 1-136 (180)
48 PF03721 UDPG_MGDP_dh_N: UDP-g 98.9 2.8E-09 6.1E-14 92.4 8.3 125 47-183 1-141 (185)
49 PRK07066 3-hydroxybutyryl-CoA 98.8 6.7E-08 1.5E-12 90.6 12.5 119 46-191 7-140 (321)
50 PRK11730 fadB multifunctional 98.8 2.7E-08 5.9E-13 102.5 9.3 136 27-191 288-449 (715)
51 TIGR02437 FadB fatty oxidation 98.7 4.2E-08 9.1E-13 101.1 10.3 118 45-191 312-449 (714)
52 TIGR02441 fa_ox_alpha_mit fatt 98.7 5E-08 1.1E-12 100.8 10.1 118 45-191 334-471 (737)
53 PRK07819 3-hydroxybutyryl-CoA 98.7 1.5E-07 3.2E-12 87.0 12.2 117 47-191 6-142 (286)
54 PRK08293 3-hydroxybutyryl-CoA 98.7 1.8E-07 3.9E-12 86.2 12.5 119 46-191 3-141 (287)
55 PLN02353 probable UDP-glucose 98.7 2.2E-07 4.7E-12 91.5 13.3 123 46-173 1-138 (473)
56 PRK11154 fadJ multifunctional 98.7 1.4E-07 2.9E-12 97.4 12.4 117 46-191 309-446 (708)
57 TIGR02440 FadJ fatty oxidation 98.6 1.3E-07 2.9E-12 97.2 10.6 118 45-191 303-441 (699)
58 PF01073 3Beta_HSD: 3-beta hyd 98.6 2.7E-07 5.8E-12 84.9 10.8 117 50-168 1-119 (280)
59 PRK05808 3-hydroxybutyryl-CoA 98.6 7.7E-07 1.7E-11 81.7 13.3 118 46-191 3-139 (282)
60 PRK15181 Vi polysaccharide bio 98.6 1.7E-06 3.6E-11 81.6 15.3 169 45-223 14-200 (348)
61 PLN02166 dTDP-glucose 4,6-dehy 98.6 7.6E-07 1.6E-11 86.9 13.1 177 34-222 110-297 (436)
62 TIGR01915 npdG NADPH-dependent 98.5 1E-06 2.2E-11 78.1 12.1 100 47-168 1-106 (219)
63 KOG2304 3-hydroxyacyl-CoA dehy 98.5 1.1E-07 2.3E-12 84.1 5.4 120 45-191 10-153 (298)
64 PLN00198 anthocyanidin reducta 98.5 3.7E-06 7.9E-11 78.6 16.0 175 46-222 9-202 (338)
65 PF02719 Polysacc_synt_2: Poly 98.5 4.5E-08 9.8E-13 90.3 2.9 163 49-234 1-185 (293)
66 PRK06035 3-hydroxyacyl-CoA deh 98.5 8.4E-07 1.8E-11 81.8 11.2 117 47-191 4-142 (291)
67 TIGR02622 CDP_4_6_dhtase CDP-g 98.4 5.5E-06 1.2E-10 77.9 14.9 176 45-222 3-193 (349)
68 KOG1502 Flavonol reductase/cin 98.4 2.5E-06 5.4E-11 79.7 12.2 120 45-169 5-133 (327)
69 PF01210 NAD_Gly3P_dh_N: NAD-d 98.4 7.5E-07 1.6E-11 75.0 8.1 94 48-163 1-103 (157)
70 PRK07530 3-hydroxybutyryl-CoA 98.4 1.1E-06 2.5E-11 81.0 9.9 101 46-169 4-123 (292)
71 TIGR02279 PaaC-3OHAcCoADH 3-hy 98.4 1.2E-06 2.5E-11 87.1 10.3 120 45-191 4-141 (503)
72 PRK09260 3-hydroxybutyryl-CoA 98.4 1.1E-06 2.4E-11 81.0 9.3 100 47-168 2-120 (288)
73 COG1086 Predicted nucleoside-d 98.4 1.7E-06 3.7E-11 85.4 11.1 167 45-234 249-433 (588)
74 PLN02695 GDP-D-mannose-3',5'-e 98.4 2E-06 4.4E-11 82.0 11.5 170 44-223 19-202 (370)
75 PLN02427 UDP-apiose/xylose syn 98.4 2.6E-06 5.7E-11 81.2 12.3 116 45-164 13-136 (386)
76 PRK08268 3-hydroxy-acyl-CoA de 98.4 1.3E-06 2.8E-11 86.9 10.1 118 46-191 7-143 (507)
77 TIGR03589 PseB UDP-N-acetylglu 98.4 3.7E-06 8.1E-11 78.6 12.1 113 46-163 4-124 (324)
78 PLN02650 dihydroflavonol-4-red 98.4 8.2E-06 1.8E-10 76.7 14.0 179 43-223 2-198 (351)
79 TIGR01181 dTDP_gluc_dehyt dTDP 98.4 8.2E-06 1.8E-10 74.5 13.7 167 48-222 1-184 (317)
80 PRK06130 3-hydroxybutyryl-CoA 98.4 3.5E-06 7.6E-11 78.3 11.0 119 46-191 4-136 (311)
81 COG0451 WcaG Nucleoside-diphos 98.4 4.6E-06 1E-10 76.2 11.6 167 47-224 1-178 (314)
82 PLN02662 cinnamyl-alcohol dehy 98.3 5.9E-06 1.3E-10 76.2 12.4 106 46-153 4-116 (322)
83 PLN02545 3-hydroxybutyryl-CoA 98.3 3.1E-06 6.7E-11 78.2 10.4 121 46-191 4-140 (295)
84 PRK08125 bifunctional UDP-gluc 98.3 1.2E-05 2.7E-10 82.3 15.6 178 32-222 304-497 (660)
85 PLN02206 UDP-glucuronate decar 98.3 8.3E-06 1.8E-10 79.8 13.0 112 45-164 118-233 (442)
86 TIGR03026 NDP-sugDHase nucleot 98.3 1.3E-05 2.9E-10 77.5 13.9 119 47-179 1-137 (411)
87 PRK10217 dTDP-glucose 4,6-dehy 98.3 1.9E-05 4E-10 74.2 14.6 169 46-223 1-195 (355)
88 PRK06129 3-hydroxyacyl-CoA deh 98.3 4.9E-06 1.1E-10 77.5 10.0 103 46-169 2-122 (308)
89 PRK07531 bifunctional 3-hydrox 98.3 7.4E-06 1.6E-10 81.3 11.7 104 46-170 4-121 (495)
90 CHL00194 ycf39 Ycf39; Provisio 98.2 8.2E-06 1.8E-10 75.8 10.8 105 47-160 1-107 (317)
91 PRK15057 UDP-glucose 6-dehydro 98.2 1.4E-05 3.1E-10 77.0 12.6 114 47-172 1-127 (388)
92 PLN02572 UDP-sulfoquinovose sy 98.2 1.8E-05 4E-10 77.3 12.9 176 45-223 46-263 (442)
93 TIGR03466 HpnA hopanoid-associ 98.2 1.4E-05 3E-10 73.6 11.4 111 47-163 1-112 (328)
94 PLN02214 cinnamoyl-CoA reducta 98.2 2.4E-05 5.2E-10 73.7 13.0 170 46-223 10-196 (342)
95 COG1087 GalE UDP-glucose 4-epi 98.2 3.2E-05 7E-10 71.3 13.1 163 47-222 1-176 (329)
96 PRK10084 dTDP-glucose 4,6 dehy 98.2 3.2E-05 6.9E-10 72.5 13.6 175 47-223 1-202 (352)
97 PRK11908 NAD-dependent epimera 98.2 2.3E-05 5E-10 73.6 12.0 164 46-222 1-183 (347)
98 PRK15182 Vi polysaccharide bio 98.2 3.7E-05 8.1E-10 74.9 13.6 119 44-178 4-136 (425)
99 TIGR01472 gmd GDP-mannose 4,6- 98.1 4.4E-05 9.5E-10 71.5 13.3 156 47-211 1-178 (343)
100 PF03807 F420_oxidored: NADP o 98.1 7.8E-06 1.7E-10 62.5 6.8 94 48-165 1-96 (96)
101 PLN02260 probable rhamnose bio 98.1 8.9E-05 1.9E-09 76.0 16.2 180 43-223 3-194 (668)
102 PRK00094 gpsA NAD(P)H-dependen 98.1 3.1E-05 6.8E-10 71.9 11.4 101 46-168 1-110 (325)
103 PRK11064 wecC UDP-N-acetyl-D-m 98.1 3E-05 6.6E-10 75.3 11.6 111 46-172 3-129 (415)
104 COG0240 GpsA Glycerol-3-phosph 98.1 5.8E-05 1.2E-09 70.7 12.6 111 46-180 1-123 (329)
105 PLN02653 GDP-mannose 4,6-dehyd 98.1 5.2E-05 1.1E-09 70.9 12.4 110 44-155 4-126 (340)
106 PF03446 NAD_binding_2: NAD bi 98.1 2.2E-05 4.8E-10 66.3 8.7 89 46-161 1-91 (163)
107 PRK10675 UDP-galactose-4-epime 98.1 4.6E-05 9.9E-10 70.9 11.5 114 47-163 1-123 (338)
108 PLN02989 cinnamyl-alcohol dehy 98.0 0.00012 2.7E-09 67.8 14.3 175 46-222 5-198 (325)
109 PRK08229 2-dehydropantoate 2-r 98.0 4.1E-05 8.9E-10 71.9 11.1 104 46-169 2-113 (341)
110 COG2085 Predicted dinucleotide 98.0 5.7E-05 1.2E-09 66.4 11.0 96 46-166 1-96 (211)
111 PF13460 NAD_binding_10: NADH( 98.0 8E-05 1.7E-09 63.0 11.7 93 49-163 1-97 (183)
112 PRK12921 2-dehydropantoate 2-r 98.0 3.3E-05 7.2E-10 71.2 9.8 121 47-193 1-126 (305)
113 PLN02986 cinnamyl-alcohol dehy 98.0 8.7E-05 1.9E-09 68.8 12.6 106 46-153 5-117 (322)
114 TIGR01777 yfcH conserved hypot 98.0 3.5E-05 7.6E-10 69.7 9.7 98 49-155 1-102 (292)
115 PRK06194 hypothetical protein; 98.0 7.8E-05 1.7E-09 67.7 11.9 158 46-219 6-191 (287)
116 PRK11150 rfaD ADP-L-glycero-D- 98.0 8.8E-05 1.9E-09 68.2 12.4 167 49-223 2-175 (308)
117 PLN02896 cinnamyl-alcohol dehy 98.0 7E-05 1.5E-09 70.5 11.9 174 45-223 9-211 (353)
118 PLN02778 3,5-epimerase/4-reduc 98.0 8.8E-05 1.9E-09 68.6 12.3 91 44-156 7-104 (298)
119 PRK14619 NAD(P)H-dependent gly 98.0 5.6E-05 1.2E-09 70.4 11.0 80 45-165 3-84 (308)
120 PRK09987 dTDP-4-dehydrorhamnos 98.0 3.2E-05 7E-10 71.4 9.3 99 47-163 1-103 (299)
121 PLN03209 translocon at the inn 98.0 7.1E-05 1.5E-09 75.1 12.0 115 45-161 79-206 (576)
122 PLN02583 cinnamoyl-CoA reducta 98.0 0.00012 2.7E-09 67.4 12.3 104 47-154 7-118 (297)
123 PRK06522 2-dehydropantoate 2-r 97.9 0.00014 3E-09 66.9 12.5 102 47-170 1-107 (304)
124 PTZ00345 glycerol-3-phosphate 97.9 0.00011 2.3E-09 70.3 11.6 107 31-163 2-129 (365)
125 COG1748 LYS9 Saccharopine dehy 97.9 0.00015 3.3E-09 69.5 12.3 150 46-223 1-159 (389)
126 PRK12439 NAD(P)H-dependent gly 97.9 0.0001 2.2E-09 69.7 10.8 100 44-168 5-116 (341)
127 PRK14620 NAD(P)H-dependent gly 97.9 0.00011 2.4E-09 68.7 11.0 100 47-168 1-111 (326)
128 PRK06249 2-dehydropantoate 2-r 97.9 0.00015 3.2E-09 67.6 11.3 121 44-191 3-127 (313)
129 TIGR01214 rmlD dTDP-4-dehydror 97.9 9.3E-05 2E-09 67.1 9.7 95 48-163 1-99 (287)
130 PRK14618 NAD(P)H-dependent gly 97.9 0.00012 2.6E-09 68.6 10.7 98 45-167 3-108 (328)
131 PLN02686 cinnamoyl-CoA reducta 97.9 0.00016 3.4E-09 68.9 11.6 176 44-222 51-250 (367)
132 PRK07201 short chain dehydroge 97.9 0.00018 4E-09 73.1 12.8 111 47-161 1-123 (657)
133 PRK07985 oxidoreductase; Provi 97.8 0.00077 1.7E-08 62.1 15.7 146 17-165 2-187 (294)
134 PLN02240 UDP-glucose 4-epimera 97.8 0.00022 4.9E-09 66.6 11.5 114 46-163 5-131 (352)
135 COG0677 WecC UDP-N-acetyl-D-ma 97.8 0.00025 5.3E-09 67.7 11.5 115 46-173 9-139 (436)
136 PRK07417 arogenate dehydrogena 97.8 0.00014 3.1E-09 66.7 9.7 64 47-122 1-65 (279)
137 TIGR03376 glycerol3P_DH glycer 97.8 0.00017 3.6E-09 68.4 10.2 71 48-122 1-90 (342)
138 PF01118 Semialdhyde_dh: Semia 97.8 0.00011 2.3E-09 59.1 7.6 72 48-122 1-74 (121)
139 PRK08643 acetoin reductase; Va 97.8 0.0012 2.6E-08 58.7 15.0 115 47-165 3-140 (256)
140 KOG1429 dTDP-glucose 4-6-dehyd 97.7 9.7E-05 2.1E-09 67.7 7.7 111 46-162 27-139 (350)
141 PLN02657 3,8-divinyl protochlo 97.7 0.00046 1E-08 66.4 12.1 112 45-161 59-180 (390)
142 PLN02253 xanthoxin dehydrogena 97.7 0.001 2.2E-08 60.2 13.7 146 46-208 18-187 (280)
143 PLN02725 GDP-4-keto-6-deoxyman 97.7 0.00038 8.2E-09 63.5 10.8 150 51-222 2-164 (306)
144 PRK07424 bifunctional sterol d 97.7 0.00071 1.5E-08 65.6 13.2 129 18-150 151-284 (406)
145 TIGR02197 heptose_epim ADP-L-g 97.7 0.00035 7.5E-09 64.0 10.6 109 49-163 1-113 (314)
146 PF01370 Epimerase: NAD depend 97.7 9.6E-05 2.1E-09 64.6 6.5 168 49-222 1-174 (236)
147 PRK13394 3-hydroxybutyrate deh 97.7 0.00038 8.3E-09 61.9 10.1 114 46-163 7-143 (262)
148 PRK06482 short chain dehydroge 97.6 0.00091 2E-08 60.4 12.6 113 47-164 3-135 (276)
149 PRK12384 sorbitol-6-phosphate 97.6 0.0023 4.9E-08 57.1 15.0 118 47-166 3-143 (259)
150 PLN02260 probable rhamnose bio 97.6 0.0004 8.8E-09 71.2 11.4 90 44-155 378-474 (668)
151 PRK11880 pyrroline-5-carboxyla 97.6 0.00041 8.8E-09 62.9 10.3 96 46-167 2-98 (267)
152 PRK07502 cyclohexadienyl dehyd 97.6 0.00044 9.6E-09 64.2 10.5 69 46-123 6-75 (307)
153 PRK08267 short chain dehydroge 97.6 0.00043 9.3E-09 61.9 10.0 115 47-165 2-137 (260)
154 PRK06180 short chain dehydroge 97.6 0.0014 3.1E-08 59.4 13.6 114 46-164 4-137 (277)
155 PRK05865 hypothetical protein; 97.6 0.00042 9.2E-09 72.8 11.3 104 47-166 1-105 (854)
156 PRK12320 hypothetical protein; 97.6 0.00033 7.1E-09 72.1 10.2 100 47-163 1-101 (699)
157 PLN02688 pyrroline-5-carboxyla 97.6 0.00035 7.7E-09 63.3 9.5 95 47-167 1-99 (266)
158 PRK12829 short chain dehydroge 97.6 0.0016 3.4E-08 58.0 13.5 36 45-82 10-45 (264)
159 PRK07680 late competence prote 97.6 0.00048 1E-08 62.9 10.3 97 47-167 1-100 (273)
160 PF10727 Rossmann-like: Rossma 97.6 0.00014 3E-09 59.4 6.0 102 45-172 9-115 (127)
161 PRK05717 oxidoreductase; Valid 97.6 0.00084 1.8E-08 59.9 11.6 144 46-208 10-176 (255)
162 KOG1430 C-3 sterol dehydrogena 97.6 0.00045 9.7E-09 65.8 10.0 110 45-156 3-119 (361)
163 PLN00141 Tic62-NAD(P)-related 97.6 0.0006 1.3E-08 61.1 10.3 111 45-163 16-132 (251)
164 PRK07523 gluconate 5-dehydroge 97.6 0.0017 3.6E-08 57.9 13.0 116 46-165 10-147 (255)
165 PRK09135 pteridine reductase; 97.6 0.0015 3.3E-08 57.4 12.7 147 47-208 7-175 (249)
166 TIGR01179 galE UDP-glucose-4-e 97.6 0.00064 1.4E-08 62.2 10.5 107 48-159 1-117 (328)
167 PRK08269 3-hydroxybutyryl-CoA 97.5 0.00065 1.4E-08 63.7 10.5 110 58-191 1-136 (314)
168 PRK07231 fabG 3-ketoacyl-(acyl 97.5 0.0033 7.1E-08 55.5 14.6 35 46-82 5-39 (251)
169 COG2910 Putative NADH-flavin r 97.5 0.00061 1.3E-08 58.9 9.3 102 47-164 1-105 (211)
170 PRK06182 short chain dehydroge 97.5 0.001 2.2E-08 60.1 11.3 114 46-164 3-133 (273)
171 PRK08655 prephenate dehydrogen 97.5 0.00069 1.5E-08 66.3 10.9 66 47-122 1-66 (437)
172 PRK07326 short chain dehydroge 97.5 0.0012 2.6E-08 57.9 11.5 115 46-165 6-141 (237)
173 PRK10538 malonic semialdehyde 97.5 0.0015 3.2E-08 58.1 12.1 34 47-82 1-34 (248)
174 PRK11559 garR tartronate semia 97.5 0.00053 1.1E-08 63.2 9.4 65 46-122 2-66 (296)
175 PRK12429 3-hydroxybutyrate deh 97.5 0.00075 1.6E-08 59.8 10.1 114 46-164 4-140 (258)
176 TIGR00872 gnd_rel 6-phosphoglu 97.5 0.00076 1.7E-08 62.5 10.3 95 47-166 1-96 (298)
177 PRK07102 short chain dehydroge 97.5 0.0043 9.3E-08 54.8 14.8 117 46-165 1-136 (243)
178 PRK06924 short chain dehydroge 97.5 0.001 2.2E-08 59.0 10.7 34 47-82 2-35 (251)
179 PRK07069 short chain dehydroge 97.5 0.0045 9.7E-08 54.7 14.9 114 48-164 1-138 (251)
180 PRK06545 prephenate dehydrogen 97.5 0.00078 1.7E-08 64.2 10.5 68 47-122 1-68 (359)
181 PRK07806 short chain dehydroge 97.5 0.00092 2E-08 59.2 10.4 115 46-164 6-135 (248)
182 PRK07067 sorbitol dehydrogenas 97.5 0.002 4.3E-08 57.4 12.4 114 47-164 7-140 (257)
183 PRK06928 pyrroline-5-carboxyla 97.5 0.0018 3.9E-08 59.4 12.3 100 46-168 1-103 (277)
184 PRK06172 short chain dehydroge 97.5 0.0023 4.9E-08 56.9 12.6 114 46-164 7-144 (253)
185 PRK07634 pyrroline-5-carboxyla 97.5 0.0013 2.8E-08 58.8 11.0 100 45-168 3-104 (245)
186 PF02558 ApbA: Ketopantoate re 97.5 0.00045 9.8E-09 57.0 7.4 118 49-193 1-125 (151)
187 TIGR01505 tartro_sem_red 2-hyd 97.5 0.00058 1.3E-08 62.9 8.8 63 48-122 1-63 (291)
188 KOG2666 UDP-glucose/GDP-mannos 97.5 0.00099 2.1E-08 62.0 10.1 106 46-159 1-122 (481)
189 PRK08265 short chain dehydroge 97.5 0.0024 5.3E-08 57.3 12.7 112 46-164 6-137 (261)
190 PRK07679 pyrroline-5-carboxyla 97.5 0.0012 2.6E-08 60.5 10.8 100 45-168 2-104 (279)
191 TIGR01746 Thioester-redct thio 97.4 0.0011 2.3E-08 61.6 10.5 111 48-159 1-132 (367)
192 PF04321 RmlD_sub_bind: RmlD s 97.4 0.00015 3.3E-09 66.7 4.8 96 47-163 1-100 (286)
193 PRK12936 3-ketoacyl-(acyl-carr 97.4 0.0021 4.6E-08 56.4 12.0 114 46-166 6-141 (245)
194 PRK07774 short chain dehydroge 97.4 0.0063 1.4E-07 53.7 15.0 114 46-163 6-144 (250)
195 PRK08278 short chain dehydroge 97.4 0.0051 1.1E-07 55.7 14.6 158 46-219 6-192 (273)
196 PRK12828 short chain dehydroge 97.4 0.0013 2.8E-08 57.5 10.3 115 46-164 7-141 (239)
197 PRK07856 short chain dehydroge 97.4 0.0027 5.9E-08 56.5 12.5 109 46-164 6-135 (252)
198 PRK12937 short chain dehydroge 97.4 0.0032 6.9E-08 55.4 12.8 115 46-164 5-140 (245)
199 PLN02996 fatty acyl-CoA reduct 97.4 0.0022 4.7E-08 63.7 12.9 121 42-163 7-161 (491)
200 PRK11199 tyrA bifunctional cho 97.4 0.00086 1.9E-08 64.3 9.6 54 45-122 97-150 (374)
201 TIGR01832 kduD 2-deoxy-D-gluco 97.4 0.0076 1.6E-07 53.2 15.1 115 46-164 5-140 (248)
202 PRK08945 putative oxoacyl-(acy 97.4 0.018 3.8E-07 51.0 17.2 119 43-164 9-152 (247)
203 PRK05875 short chain dehydroge 97.4 0.0058 1.3E-07 55.1 14.2 117 46-164 7-146 (276)
204 PRK08507 prephenate dehydrogen 97.4 0.0013 2.7E-08 60.2 9.8 66 47-122 1-66 (275)
205 TIGR03206 benzo_BadH 2-hydroxy 97.4 0.0028 6E-08 56.0 11.7 114 46-164 3-139 (250)
206 PRK07666 fabG 3-ketoacyl-(acyl 97.4 0.0065 1.4E-07 53.4 14.0 117 46-166 7-145 (239)
207 PRK06914 short chain dehydroge 97.4 0.007 1.5E-07 54.6 14.5 35 46-82 3-37 (280)
208 PRK12549 shikimate 5-dehydroge 97.4 0.00072 1.6E-08 62.5 8.0 90 31-125 112-205 (284)
209 PRK08263 short chain dehydroge 97.3 0.0011 2.4E-08 60.0 9.1 112 46-163 3-135 (275)
210 PRK06101 short chain dehydroge 97.3 0.0048 1E-07 54.6 13.0 114 47-164 2-128 (240)
211 PRK07890 short chain dehydroge 97.3 0.0022 4.7E-08 57.0 10.8 117 44-164 3-141 (258)
212 PRK07024 short chain dehydroge 97.3 0.003 6.6E-08 56.4 11.8 35 46-82 2-36 (257)
213 PRK05876 short chain dehydroge 97.3 0.0045 9.8E-08 56.3 13.1 115 46-164 6-143 (275)
214 PLN02256 arogenate dehydrogena 97.3 0.0019 4E-08 60.4 10.6 65 45-122 35-100 (304)
215 PRK07576 short chain dehydroge 97.3 0.0037 8.1E-08 56.3 12.3 117 46-166 9-146 (264)
216 PRK06841 short chain dehydroge 97.3 0.0027 5.9E-08 56.3 11.3 113 46-164 15-148 (255)
217 COG0287 TyrA Prephenate dehydr 97.3 0.0026 5.7E-08 58.7 11.3 68 45-122 2-72 (279)
218 PRK12367 short chain dehydroge 97.3 0.008 1.7E-07 54.0 14.3 100 47-150 15-118 (245)
219 PRK12491 pyrroline-5-carboxyla 97.3 0.0016 3.4E-08 59.9 9.8 68 46-122 2-71 (272)
220 PRK08219 short chain dehydroge 97.3 0.0019 4.1E-08 56.1 9.8 75 46-125 3-82 (227)
221 PRK07814 short chain dehydroge 97.3 0.0088 1.9E-07 53.7 14.4 116 45-164 9-147 (263)
222 PRK12480 D-lactate dehydrogena 97.3 0.0016 3.4E-08 61.5 9.7 92 45-165 145-236 (330)
223 PRK07063 short chain dehydroge 97.3 0.0078 1.7E-07 53.7 13.8 116 46-164 7-145 (260)
224 COG0300 DltE Short-chain dehyd 97.3 0.0028 6E-08 58.0 10.9 119 43-165 3-144 (265)
225 PRK05993 short chain dehydroge 97.3 0.0021 4.6E-08 58.3 10.3 113 46-164 4-135 (277)
226 PRK06181 short chain dehydroge 97.3 0.0055 1.2E-07 54.7 12.7 115 47-165 2-138 (263)
227 TIGR03325 BphB_TodD cis-2,3-di 97.3 0.0029 6.3E-08 56.7 10.8 35 46-82 5-39 (262)
228 TIGR02354 thiF_fam2 thiamine b 97.3 0.0033 7.1E-08 55.2 10.9 34 46-81 21-54 (200)
229 PRK08213 gluconate 5-dehydroge 97.3 0.0048 1E-07 55.1 12.1 115 46-164 12-149 (259)
230 PRK12826 3-ketoacyl-(acyl-carr 97.3 0.0033 7.1E-08 55.4 10.9 115 45-164 5-142 (251)
231 PRK08340 glucose-1-dehydrogena 97.3 0.0065 1.4E-07 54.4 12.9 34 47-82 1-34 (259)
232 PRK12745 3-ketoacyl-(acyl-carr 97.2 0.014 3E-07 51.8 14.8 34 47-82 3-36 (256)
233 PRK14982 acyl-ACP reductase; P 97.2 0.0019 4E-08 61.2 9.5 97 45-169 154-252 (340)
234 PRK12827 short chain dehydroge 97.2 0.01 2.3E-07 52.0 13.9 102 46-151 6-130 (249)
235 PRK12939 short chain dehydroge 97.2 0.011 2.3E-07 52.1 13.9 115 46-164 7-143 (250)
236 PRK06179 short chain dehydroge 97.2 0.0028 6.1E-08 56.9 10.3 111 46-164 4-132 (270)
237 PRK12490 6-phosphogluconate de 97.2 0.0015 3.3E-08 60.5 8.8 91 47-164 1-95 (299)
238 PTZ00431 pyrroline carboxylate 97.2 0.0024 5.3E-08 58.0 9.9 90 46-167 3-94 (260)
239 PRK05708 2-dehydropantoate 2-r 97.2 0.0057 1.2E-07 56.9 12.5 117 46-191 2-125 (305)
240 PRK12742 oxidoreductase; Provi 97.2 0.0062 1.3E-07 53.4 12.1 147 46-208 6-165 (237)
241 COG2084 MmsB 3-hydroxyisobutyr 97.2 0.0025 5.4E-08 58.9 9.8 66 47-123 1-66 (286)
242 COG0569 TrkA K+ transport syst 97.2 0.002 4.2E-08 57.6 8.9 71 47-123 1-75 (225)
243 PRK05653 fabG 3-ketoacyl-(acyl 97.2 0.0026 5.6E-08 55.7 9.5 35 46-82 5-39 (246)
244 TIGR01963 PHB_DH 3-hydroxybuty 97.2 0.0054 1.2E-07 54.2 11.7 34 47-82 2-35 (255)
245 PRK06500 short chain dehydroge 97.2 0.0059 1.3E-07 53.8 11.9 101 46-153 6-125 (249)
246 PRK12746 short chain dehydroge 97.2 0.017 3.6E-07 51.3 14.8 115 46-164 6-147 (254)
247 PTZ00142 6-phosphogluconate de 97.2 0.0022 4.9E-08 63.3 10.0 97 47-166 2-104 (470)
248 PRK07832 short chain dehydroge 97.2 0.025 5.5E-07 51.0 16.2 118 47-166 1-140 (272)
249 KOG2305 3-hydroxyacyl-CoA dehy 97.2 0.001 2.2E-08 59.3 6.6 108 46-172 3-127 (313)
250 COG4221 Short-chain alcohol de 97.2 0.018 3.8E-07 52.0 14.6 133 47-193 7-157 (246)
251 PRK12481 2-deoxy-D-gluconate 3 97.2 0.0055 1.2E-07 54.8 11.6 116 46-165 8-144 (251)
252 PRK06124 gluconate 5-dehydroge 97.2 0.0049 1.1E-07 54.8 11.2 118 45-166 10-149 (256)
253 COG1893 ApbA Ketopantoate redu 97.2 0.0022 4.7E-08 60.0 9.2 120 47-194 1-126 (307)
254 PRK06398 aldose dehydrogenase; 97.2 0.0036 7.7E-08 56.2 10.3 111 46-164 6-131 (258)
255 PRK07074 short chain dehydroge 97.2 0.005 1.1E-07 54.8 11.1 34 47-82 3-36 (257)
256 PRK09599 6-phosphogluconate de 97.1 0.004 8.7E-08 57.7 10.7 64 47-122 1-67 (301)
257 PRK09291 short chain dehydroge 97.1 0.0079 1.7E-07 53.4 12.2 77 47-125 3-84 (257)
258 PRK08264 short chain dehydroge 97.1 0.007 1.5E-07 53.1 11.7 113 46-166 6-135 (238)
259 PRK08818 prephenate dehydrogen 97.1 0.0032 7E-08 60.3 10.2 55 46-122 4-59 (370)
260 TIGR02632 RhaD_aldol-ADH rhamn 97.1 0.011 2.3E-07 61.1 14.7 36 45-82 413-448 (676)
261 PRK06138 short chain dehydroge 97.1 0.013 2.8E-07 51.7 13.5 35 46-82 5-39 (252)
262 PRK05854 short chain dehydroge 97.1 0.0066 1.4E-07 56.4 12.0 115 46-164 14-150 (313)
263 PLN02712 arogenate dehydrogena 97.1 0.003 6.6E-08 65.0 10.5 91 44-163 50-143 (667)
264 PRK13243 glyoxylate reductase; 97.1 0.0026 5.7E-08 60.1 9.3 97 45-168 149-247 (333)
265 PRK15461 NADH-dependent gamma- 97.1 0.0013 2.7E-08 61.0 7.1 64 47-122 2-65 (296)
266 PRK08642 fabG 3-ketoacyl-(acyl 97.1 0.0071 1.5E-07 53.4 11.7 33 47-81 6-38 (253)
267 PRK05650 short chain dehydroge 97.1 0.0055 1.2E-07 55.1 11.1 113 47-164 1-136 (270)
268 TIGR01830 3oxo_ACP_reduc 3-oxo 97.1 0.0066 1.4E-07 53.0 11.3 114 49-166 1-137 (239)
269 PRK06197 short chain dehydroge 97.1 0.008 1.7E-07 55.3 12.3 116 46-164 16-152 (306)
270 PRK08339 short chain dehydroge 97.1 0.04 8.8E-07 49.6 16.7 116 46-165 8-145 (263)
271 PRK06128 oxidoreductase; Provi 97.1 0.033 7.1E-07 51.2 16.3 115 46-164 55-192 (300)
272 PRK05693 short chain dehydroge 97.1 0.0081 1.8E-07 54.2 12.0 34 47-82 2-35 (274)
273 PRK06701 short chain dehydroge 97.1 0.035 7.6E-07 50.9 16.3 115 46-164 46-182 (290)
274 PRK08226 short chain dehydroge 97.1 0.0081 1.8E-07 53.6 11.7 115 46-164 6-141 (263)
275 PRK07825 short chain dehydroge 97.1 0.011 2.3E-07 53.3 12.6 115 46-165 5-138 (273)
276 PF01113 DapB_N: Dihydrodipico 97.1 0.0057 1.2E-07 49.4 9.7 72 47-121 1-74 (124)
277 PRK12825 fabG 3-ketoacyl-(acyl 97.1 0.01 2.2E-07 51.9 12.1 35 46-82 6-40 (249)
278 PRK08589 short chain dehydroge 97.1 0.011 2.3E-07 53.5 12.6 114 46-165 6-142 (272)
279 PRK05565 fabG 3-ketoacyl-(acyl 97.1 0.0062 1.3E-07 53.4 10.7 103 46-152 5-127 (247)
280 PRK09009 C factor cell-cell si 97.1 0.008 1.7E-07 52.7 11.4 71 47-125 1-78 (235)
281 PRK12823 benD 1,6-dihydroxycyc 97.1 0.0082 1.8E-07 53.5 11.6 35 46-82 8-42 (260)
282 PRK08251 short chain dehydroge 97.1 0.012 2.6E-07 52.0 12.6 115 47-164 3-140 (248)
283 PRK06196 oxidoreductase; Provi 97.1 0.0072 1.6E-07 56.0 11.6 113 46-164 26-156 (315)
284 PRK08993 2-deoxy-D-gluconate 3 97.1 0.032 6.9E-07 49.7 15.4 115 46-164 10-145 (253)
285 PRK06523 short chain dehydroge 97.1 0.0022 4.7E-08 57.2 7.8 112 46-165 9-139 (260)
286 PRK12935 acetoacetyl-CoA reduc 97.1 0.018 3.8E-07 50.8 13.6 115 46-164 6-143 (247)
287 PRK05866 short chain dehydroge 97.1 0.0082 1.8E-07 55.2 11.8 35 46-82 40-74 (293)
288 PRK06198 short chain dehydroge 97.0 0.036 7.8E-07 49.3 15.6 115 46-164 6-144 (260)
289 PLN00016 RNA-binding protein; 97.0 0.0062 1.3E-07 58.0 11.2 37 44-82 50-90 (378)
290 PRK08220 2,3-dihydroxybenzoate 97.0 0.0097 2.1E-07 52.6 11.8 35 46-82 8-42 (252)
291 PRK07454 short chain dehydroge 97.0 0.0062 1.4E-07 53.6 10.5 36 45-82 5-40 (241)
292 PRK08177 short chain dehydroge 97.0 0.0086 1.9E-07 52.4 11.3 34 47-82 2-35 (225)
293 PRK12747 short chain dehydroge 97.0 0.037 8E-07 49.1 15.5 33 46-80 4-36 (252)
294 PRK12743 oxidoreductase; Provi 97.0 0.038 8.1E-07 49.3 15.6 115 46-164 2-140 (256)
295 PRK07097 gluconate 5-dehydroge 97.0 0.013 2.9E-07 52.5 12.7 116 46-166 10-148 (265)
296 PRK06057 short chain dehydroge 97.0 0.0069 1.5E-07 54.0 10.7 35 46-82 7-41 (255)
297 PRK06171 sorbitol-6-phosphate 97.0 0.0037 8.1E-08 56.0 9.0 35 46-82 9-43 (266)
298 COG1090 Predicted nucleoside-d 97.0 0.0057 1.2E-07 56.0 10.0 98 49-157 1-103 (297)
299 PRK07478 short chain dehydroge 97.0 0.023 5E-07 50.4 14.1 154 46-217 6-183 (254)
300 PRK08085 gluconate 5-dehydroge 97.0 0.014 2.9E-07 52.0 12.5 115 46-164 9-145 (254)
301 PRK08628 short chain dehydroge 97.0 0.017 3.7E-07 51.3 13.2 114 46-163 7-139 (258)
302 PRK06935 2-deoxy-D-gluconate 3 97.0 0.012 2.6E-07 52.5 12.2 35 46-82 15-49 (258)
303 PF01488 Shikimate_DH: Shikima 97.0 0.0031 6.8E-08 51.6 7.7 76 45-125 11-86 (135)
304 PRK09242 tropinone reductase; 97.0 0.027 5.9E-07 50.1 14.4 116 46-164 9-147 (257)
305 PF05368 NmrA: NmrA-like famil 97.0 0.0029 6.2E-08 55.9 7.9 94 49-156 1-96 (233)
306 PRK07453 protochlorophyllide o 97.0 0.0064 1.4E-07 56.4 10.7 114 46-163 6-144 (322)
307 TIGR03649 ergot_EASG ergot alk 97.0 0.0041 9E-08 56.5 9.2 69 48-123 1-76 (285)
308 PRK15059 tartronate semialdehy 97.0 0.0031 6.7E-08 58.4 8.4 63 47-122 1-63 (292)
309 PRK05557 fabG 3-ketoacyl-(acyl 97.0 0.013 2.9E-07 51.1 12.1 115 46-164 5-142 (248)
310 TIGR02415 23BDH acetoin reduct 97.0 0.019 4.1E-07 50.8 13.1 112 48-163 2-136 (254)
311 PRK06113 7-alpha-hydroxysteroi 97.0 0.041 9E-07 48.9 15.4 115 46-164 11-146 (255)
312 PRK15469 ghrA bifunctional gly 97.0 0.0076 1.7E-07 56.5 10.9 91 46-163 136-226 (312)
313 COG1712 Predicted dinucleotide 97.0 0.0065 1.4E-07 54.1 9.7 96 47-167 1-97 (255)
314 PRK07035 short chain dehydroge 97.0 0.012 2.6E-07 52.1 11.8 34 47-82 9-42 (252)
315 COG1091 RfbD dTDP-4-dehydrorha 97.0 0.0043 9.3E-08 57.2 9.0 203 47-281 1-226 (281)
316 COG0345 ProC Pyrroline-5-carbo 97.0 0.0086 1.9E-07 54.9 10.9 97 46-167 1-99 (266)
317 PRK07577 short chain dehydroge 97.0 0.0052 1.1E-07 53.7 9.3 35 46-82 3-37 (234)
318 PRK08277 D-mannonate oxidoredu 97.0 0.028 6.1E-07 50.7 14.3 35 46-82 10-44 (278)
319 PRK06947 glucose-1-dehydrogena 97.0 0.019 4.1E-07 50.7 12.9 33 46-80 2-34 (248)
320 PLN02780 ketoreductase/ oxidor 97.0 0.0093 2E-07 55.8 11.4 116 46-164 53-193 (320)
321 PRK12744 short chain dehydroge 97.0 0.029 6.3E-07 50.0 14.2 152 47-217 9-185 (257)
322 PRK06550 fabG 3-ketoacyl-(acyl 97.0 0.013 2.9E-07 51.2 11.7 108 46-164 5-127 (235)
323 PRK09186 flagellin modificatio 96.9 0.015 3.2E-07 51.6 12.1 36 45-82 3-38 (256)
324 PRK07060 short chain dehydroge 96.9 0.0088 1.9E-07 52.6 10.5 115 46-164 9-137 (245)
325 PRK05855 short chain dehydroge 96.9 0.012 2.6E-07 58.3 12.7 117 45-165 314-453 (582)
326 PRK05867 short chain dehydroge 96.9 0.01 2.2E-07 52.9 10.9 114 46-163 9-145 (253)
327 PRK14806 bifunctional cyclohex 96.9 0.007 1.5E-07 62.8 11.2 92 47-163 4-97 (735)
328 PRK05884 short chain dehydroge 96.9 0.0053 1.2E-07 54.0 8.9 34 47-82 1-34 (223)
329 PRK06949 short chain dehydroge 96.9 0.012 2.6E-07 52.2 11.2 35 46-82 9-43 (258)
330 PRK05786 fabG 3-ketoacyl-(acyl 96.9 0.0074 1.6E-07 52.9 9.7 35 46-82 5-39 (238)
331 PRK05479 ketol-acid reductoiso 96.9 0.0083 1.8E-07 56.6 10.4 67 44-122 15-81 (330)
332 PRK08936 glucose-1-dehydrogena 96.9 0.073 1.6E-06 47.5 16.2 115 46-164 7-145 (261)
333 COG1088 RfbB dTDP-D-glucose 4, 96.9 0.011 2.4E-07 54.7 10.8 168 47-215 1-178 (340)
334 PRK06463 fabG 3-ketoacyl-(acyl 96.9 0.011 2.4E-07 52.7 10.7 115 46-164 7-138 (255)
335 PRK07904 short chain dehydroge 96.9 0.016 3.4E-07 52.0 11.8 116 45-164 7-146 (253)
336 PRK09072 short chain dehydroge 96.9 0.024 5.2E-07 50.7 12.9 115 46-165 5-140 (263)
337 cd00762 NAD_bind_malic_enz NAD 96.9 0.0028 6.2E-08 57.5 6.8 124 46-192 25-167 (254)
338 PRK07109 short chain dehydroge 96.9 0.021 4.6E-07 53.6 13.0 114 46-164 8-144 (334)
339 PRK06476 pyrroline-5-carboxyla 96.9 0.0061 1.3E-07 55.1 9.0 68 47-122 1-69 (258)
340 PLN02503 fatty acyl-CoA reduct 96.9 0.014 3E-07 59.5 12.4 112 42-154 115-258 (605)
341 PRK07831 short chain dehydroge 96.9 0.083 1.8E-06 47.2 16.3 35 46-82 17-52 (262)
342 COG0136 Asd Aspartate-semialde 96.8 0.0059 1.3E-07 57.4 8.8 73 46-123 1-75 (334)
343 PRK06200 2,3-dihydroxy-2,3-dih 96.8 0.014 3.1E-07 52.2 11.1 36 45-82 5-40 (263)
344 PRK06598 aspartate-semialdehyd 96.8 0.0065 1.4E-07 58.2 9.1 72 46-123 1-74 (369)
345 PRK06953 short chain dehydroge 96.8 0.018 4E-07 50.2 11.4 113 47-164 2-130 (222)
346 PRK08605 D-lactate dehydrogena 96.8 0.0055 1.2E-07 57.9 8.5 62 46-122 146-208 (332)
347 PLN02712 arogenate dehydrogena 96.8 0.01 2.3E-07 61.1 11.0 66 44-122 367-433 (667)
348 PRK07574 formate dehydrogenase 96.8 0.01 2.3E-07 57.2 10.4 94 45-163 191-284 (385)
349 PRK08703 short chain dehydroge 96.8 0.089 1.9E-06 46.2 15.6 35 46-82 6-40 (239)
350 PRK13304 L-aspartate dehydroge 96.8 0.0087 1.9E-07 54.7 9.3 69 46-123 1-70 (265)
351 PRK07578 short chain dehydroge 96.8 0.017 3.6E-07 49.6 10.6 104 47-163 1-111 (199)
352 PRK07775 short chain dehydroge 96.8 0.046 1E-06 49.4 14.0 35 46-82 10-44 (274)
353 TIGR01745 asd_gamma aspartate- 96.8 0.0074 1.6E-07 57.7 9.0 71 47-123 1-73 (366)
354 PRK06123 short chain dehydroge 96.8 0.056 1.2E-06 47.6 14.2 34 47-82 3-36 (248)
355 cd05213 NAD_bind_Glutamyl_tRNA 96.8 0.012 2.5E-07 55.0 10.3 100 45-169 177-279 (311)
356 PRK12824 acetoacetyl-CoA reduc 96.8 0.026 5.5E-07 49.5 12.0 115 47-165 3-140 (245)
357 PRK06139 short chain dehydroge 96.8 0.026 5.6E-07 53.1 12.6 114 46-164 7-143 (330)
358 cd01065 NAD_bind_Shikimate_DH 96.7 0.0057 1.2E-07 50.4 7.2 73 45-125 18-92 (155)
359 PRK09134 short chain dehydroge 96.7 0.011 2.5E-07 52.6 9.7 113 46-162 9-144 (258)
360 PRK07023 short chain dehydroge 96.7 0.0058 1.3E-07 54.0 7.7 35 46-82 1-35 (243)
361 KOG1371 UDP-glucose 4-epimeras 96.7 0.016 3.4E-07 54.3 10.6 105 46-154 2-119 (343)
362 TIGR00873 gnd 6-phosphoglucona 96.7 0.0093 2E-07 58.9 9.6 97 48-164 1-99 (467)
363 PRK08063 enoyl-(acyl carrier p 96.7 0.046 1E-06 48.2 13.3 114 47-164 5-141 (250)
364 PRK08416 7-alpha-hydroxysteroi 96.7 0.11 2.3E-06 46.5 15.8 33 46-80 8-40 (260)
365 PRK07062 short chain dehydroge 96.7 0.046 9.9E-07 48.9 13.4 116 46-164 8-146 (265)
366 cd01078 NAD_bind_H4MPT_DH NADP 96.7 0.0058 1.3E-07 52.8 7.2 75 46-123 28-106 (194)
367 PF03949 Malic_M: Malic enzyme 96.7 0.0074 1.6E-07 54.9 8.0 121 46-191 25-166 (255)
368 PLN03139 formate dehydrogenase 96.7 0.013 2.8E-07 56.5 10.1 94 45-163 198-291 (386)
369 PRK06077 fabG 3-ketoacyl-(acyl 96.7 0.04 8.6E-07 48.6 12.6 33 46-80 6-38 (252)
370 PLN02928 oxidoreductase family 96.7 0.0089 1.9E-07 56.8 8.7 104 45-164 158-263 (347)
371 KOG1205 Predicted dehydrogenas 96.6 0.022 4.8E-07 52.6 11.0 121 46-170 12-156 (282)
372 cd01487 E1_ThiF_like E1_ThiF_l 96.6 0.024 5.3E-07 48.5 10.6 33 48-82 1-33 (174)
373 TIGR02356 adenyl_thiF thiazole 96.6 0.015 3.2E-07 51.0 9.5 35 46-82 21-55 (202)
374 PRK14874 aspartate-semialdehyd 96.6 0.0054 1.2E-07 57.9 7.2 71 46-123 1-72 (334)
375 PF07993 NAD_binding_4: Male s 96.6 0.0084 1.8E-07 53.8 8.1 112 51-164 1-135 (249)
376 PRK07677 short chain dehydroge 96.6 0.053 1.2E-06 48.1 13.2 114 47-164 2-138 (252)
377 TIGR02685 pter_reduc_Leis pter 96.6 0.071 1.5E-06 47.8 14.0 32 48-81 3-34 (267)
378 PF00899 ThiF: ThiF family; I 96.6 0.0087 1.9E-07 48.7 7.3 34 47-82 3-36 (135)
379 PRK05671 aspartate-semialdehyd 96.6 0.0067 1.5E-07 57.4 7.4 72 45-123 3-75 (336)
380 PRK07792 fabG 3-ketoacyl-(acyl 96.6 0.047 1E-06 50.5 12.9 35 46-82 12-46 (306)
381 PLN02968 Probable N-acetyl-gam 96.6 0.0055 1.2E-07 59.0 6.9 77 44-123 36-113 (381)
382 PLN02350 phosphogluconate dehy 96.6 0.0099 2.2E-07 59.1 8.8 96 46-165 6-109 (493)
383 TIGR01850 argC N-acetyl-gamma- 96.6 0.0065 1.4E-07 57.7 7.2 74 47-123 1-77 (346)
384 PRK12938 acetyacetyl-CoA reduc 96.5 0.068 1.5E-06 47.0 13.3 31 47-79 4-34 (246)
385 PRK05872 short chain dehydroge 96.5 0.014 3.1E-07 53.5 9.2 114 46-164 9-143 (296)
386 PRK06484 short chain dehydroge 96.5 0.023 5E-07 56.2 11.2 147 46-208 269-433 (520)
387 PRK08324 short chain dehydroge 96.5 0.02 4.3E-07 59.1 11.1 114 46-164 422-558 (681)
388 PF03435 Saccharop_dh: Sacchar 96.5 0.0028 6E-08 60.7 4.4 73 49-124 1-77 (386)
389 TIGR02853 spore_dpaA dipicolin 96.5 0.011 2.4E-07 54.7 8.2 95 46-168 151-246 (287)
390 PRK06114 short chain dehydroge 96.5 0.027 5.8E-07 50.2 10.5 35 46-82 8-42 (254)
391 PRK06483 dihydromonapterin red 96.5 0.07 1.5E-06 46.8 13.0 35 46-82 2-36 (236)
392 PRK08644 thiamine biosynthesis 96.5 0.024 5.2E-07 50.2 9.9 35 46-82 28-62 (212)
393 cd05312 NAD_bind_1_malic_enz N 96.5 0.0042 9E-08 57.2 5.2 107 46-171 25-150 (279)
394 PRK07984 enoyl-(acyl carrier p 96.5 0.058 1.3E-06 48.8 12.7 35 46-82 6-42 (262)
395 TIGR01829 AcAcCoA_reduct aceto 96.5 0.087 1.9E-06 46.0 13.5 31 48-80 2-32 (242)
396 PLN02383 aspartate semialdehyd 96.5 0.0082 1.8E-07 57.0 7.3 72 45-123 6-78 (344)
397 TIGR01724 hmd_rel H2-forming N 96.5 0.041 8.9E-07 51.7 11.7 96 47-167 1-119 (341)
398 PRK08217 fabG 3-ketoacyl-(acyl 96.5 0.023 4.9E-07 50.0 9.8 35 46-82 5-39 (253)
399 PRK13302 putative L-aspartate 96.5 0.022 4.7E-07 52.3 9.8 70 44-123 4-76 (271)
400 PRK00048 dihydrodipicolinate r 96.4 0.14 3.1E-06 46.4 14.9 68 46-122 1-68 (257)
401 PRK06940 short chain dehydroge 96.4 0.029 6.2E-07 51.0 10.3 112 48-166 4-128 (275)
402 PRK06079 enoyl-(acyl carrier p 96.4 0.031 6.8E-07 49.9 10.4 35 46-82 7-43 (252)
403 PRK08261 fabG 3-ketoacyl-(acyl 96.4 0.049 1.1E-06 53.0 12.5 118 45-164 209-343 (450)
404 TIGR01327 PGDH D-3-phosphoglyc 96.4 0.014 3E-07 58.6 8.8 92 46-163 138-229 (525)
405 PRK12475 thiamine/molybdopteri 96.4 0.024 5.3E-07 53.7 10.0 35 46-82 24-58 (338)
406 PRK06484 short chain dehydroge 96.4 0.034 7.4E-07 55.0 11.6 35 46-82 5-39 (520)
407 TIGR01692 HIBADH 3-hydroxyisob 96.4 0.015 3.2E-07 53.6 8.3 61 51-123 1-61 (288)
408 PRK08017 oxidoreductase; Provi 96.4 0.048 1E-06 48.2 11.3 34 47-82 3-36 (256)
409 PRK08040 putative semialdehyde 96.4 0.0091 2E-07 56.5 6.8 72 45-123 3-75 (336)
410 TIGR00465 ilvC ketol-acid redu 96.4 0.025 5.5E-07 53.0 9.8 65 46-122 3-67 (314)
411 cd01483 E1_enzyme_family Super 96.4 0.039 8.4E-07 45.2 9.8 33 48-82 1-33 (143)
412 PRK08306 dipicolinate synthase 96.3 0.018 4E-07 53.4 8.6 67 45-122 151-218 (296)
413 TIGR01831 fabG_rel 3-oxoacyl-( 96.3 0.05 1.1E-06 47.7 11.0 114 49-166 1-138 (239)
414 cd05311 NAD_bind_2_malic_enz N 96.3 0.021 4.6E-07 51.0 8.6 98 46-168 25-133 (226)
415 PF02826 2-Hacid_dh_C: D-isome 96.3 0.011 2.4E-07 50.6 6.5 93 46-165 36-129 (178)
416 COG0002 ArgC Acetylglutamate s 96.3 0.01 2.2E-07 56.0 6.6 75 45-122 1-78 (349)
417 PRK03659 glutathione-regulated 96.3 0.038 8.2E-07 56.3 11.3 138 46-215 400-542 (601)
418 PRK06505 enoyl-(acyl carrier p 96.3 0.22 4.7E-06 45.2 15.2 35 46-82 7-43 (271)
419 PRK06728 aspartate-semialdehyd 96.3 0.011 2.3E-07 56.3 6.7 71 46-123 5-77 (347)
420 PRK14194 bifunctional 5,10-met 96.2 0.016 3.5E-07 54.0 7.6 56 45-125 158-213 (301)
421 PRK07688 thiamine/molybdopteri 96.2 0.034 7.3E-07 52.7 9.8 35 46-82 24-58 (339)
422 PRK13581 D-3-phosphoglycerate 96.2 0.019 4.1E-07 57.6 8.5 93 45-164 139-231 (526)
423 PRK06125 short chain dehydroge 96.2 0.18 3.9E-06 44.9 14.1 115 46-164 7-140 (259)
424 cd01079 NAD_bind_m-THF_DH NAD 96.2 0.02 4.4E-07 50.0 7.5 75 45-125 61-137 (197)
425 PTZ00075 Adenosylhomocysteinas 96.2 0.024 5.2E-07 55.9 8.8 90 45-165 253-343 (476)
426 PF02882 THF_DHG_CYH_C: Tetrah 96.2 0.029 6.3E-07 47.6 8.2 55 46-125 36-90 (160)
427 PRK03562 glutathione-regulated 96.2 0.047 1E-06 55.9 11.2 139 46-215 400-542 (621)
428 PRK07201 short chain dehydroge 96.2 0.058 1.3E-06 54.9 11.9 115 45-164 370-509 (657)
429 PRK05599 hypothetical protein; 96.2 0.31 6.8E-06 43.3 15.3 116 47-166 1-139 (246)
430 cd00401 AdoHcyase S-adenosyl-L 96.1 0.046 1E-06 53.2 10.4 90 45-165 201-291 (413)
431 COG0289 DapB Dihydrodipicolina 96.1 0.053 1.1E-06 49.4 10.0 75 45-120 1-75 (266)
432 TIGR02371 ala_DH_arch alanine 96.1 0.023 4.9E-07 53.5 8.1 71 46-122 128-200 (325)
433 PRK08862 short chain dehydroge 96.1 0.37 8E-06 42.6 15.4 115 46-164 5-144 (227)
434 PRK06603 enoyl-(acyl carrier p 96.1 0.39 8.5E-06 43.0 15.8 156 46-217 8-186 (260)
435 COG0111 SerA Phosphoglycerate 96.1 0.027 5.8E-07 53.1 8.3 92 46-163 142-233 (324)
436 PRK00421 murC UDP-N-acetylmura 96.1 0.047 1E-06 53.6 10.3 128 42-184 3-135 (461)
437 TIGR01035 hemA glutamyl-tRNA r 96.0 0.025 5.3E-07 55.1 8.2 140 9-169 140-283 (417)
438 TIGR00518 alaDH alanine dehydr 96.0 0.027 5.9E-07 54.0 8.3 83 37-125 158-241 (370)
439 PRK00436 argC N-acetyl-gamma-g 96.0 0.019 4.2E-07 54.4 7.2 33 46-79 2-35 (343)
440 PRK15438 erythronate-4-phospha 96.0 0.032 6.9E-07 53.7 8.6 61 45-122 115-175 (378)
441 PLN02494 adenosylhomocysteinas 96.0 0.043 9.3E-07 54.1 9.7 91 46-167 254-345 (477)
442 PRK05476 S-adenosyl-L-homocyst 96.0 0.065 1.4E-06 52.3 10.8 91 45-166 211-302 (425)
443 PRK09496 trkA potassium transp 96.0 0.037 7.9E-07 53.8 9.2 71 47-122 1-73 (453)
444 cd00757 ThiF_MoeB_HesA_family 96.0 0.051 1.1E-06 48.4 9.4 35 46-82 21-55 (228)
445 PRK08594 enoyl-(acyl carrier p 96.0 0.34 7.3E-06 43.5 14.9 34 47-82 8-43 (257)
446 COG1064 AdhP Zn-dependent alco 96.0 0.15 3.3E-06 48.3 12.9 127 45-203 166-299 (339)
447 PRK15409 bifunctional glyoxyla 96.0 0.038 8.2E-07 52.0 8.9 93 45-164 144-237 (323)
448 PRK06718 precorrin-2 dehydroge 96.0 0.069 1.5E-06 46.9 10.0 70 46-123 10-79 (202)
449 TIGR00936 ahcY adenosylhomocys 96.0 0.063 1.4E-06 52.1 10.6 90 45-165 194-284 (406)
450 PRK08291 ectoine utilization p 96.0 0.033 7.1E-07 52.5 8.4 73 46-123 132-206 (330)
451 TIGR01470 cysG_Nterm siroheme 96.0 0.093 2E-06 46.2 10.8 70 46-123 9-78 (205)
452 PRK00257 erythronate-4-phospha 96.0 0.032 6.8E-07 53.8 8.4 61 46-123 116-176 (381)
453 PRK08415 enoyl-(acyl carrier p 96.0 0.35 7.6E-06 44.0 15.0 35 46-82 5-41 (274)
454 PRK08690 enoyl-(acyl carrier p 95.9 0.53 1.2E-05 42.2 16.0 35 46-82 6-42 (261)
455 PRK08618 ornithine cyclodeamin 95.9 0.031 6.7E-07 52.5 8.1 73 46-123 127-201 (325)
456 COG1052 LdhA Lactate dehydroge 95.9 0.068 1.5E-06 50.4 10.3 93 44-163 144-236 (324)
457 PRK06436 glycerate dehydrogena 95.9 0.036 7.7E-07 51.8 8.3 95 45-169 121-217 (303)
458 PRK14106 murD UDP-N-acetylmura 95.8 0.068 1.5E-06 52.0 10.4 123 46-179 5-132 (450)
459 PF07991 IlvN: Acetohydroxy ac 95.8 0.14 3.1E-06 43.5 10.8 65 46-122 4-68 (165)
460 COG0702 Predicted nucleoside-d 95.8 0.024 5.2E-07 50.5 6.7 74 47-125 1-74 (275)
461 cd01080 NAD_bind_m-THF_DH_Cycl 95.8 0.031 6.8E-07 47.7 7.0 55 45-125 43-98 (168)
462 cd01485 E1-1_like Ubiquitin ac 95.8 0.077 1.7E-06 46.3 9.6 35 46-82 19-53 (198)
463 PF02423 OCD_Mu_crystall: Orni 95.8 0.028 6.1E-07 52.6 7.3 69 47-122 129-200 (313)
464 TIGR02355 moeB molybdopterin s 95.8 0.069 1.5E-06 48.2 9.5 35 46-82 24-58 (240)
465 PRK07533 enoyl-(acyl carrier p 95.8 0.43 9.3E-06 42.7 14.7 34 47-82 11-46 (258)
466 PRK06407 ornithine cyclodeamin 95.8 0.039 8.4E-07 51.4 8.1 73 45-122 116-190 (301)
467 PRK01438 murD UDP-N-acetylmura 95.8 0.083 1.8E-06 52.0 10.7 124 46-179 16-146 (480)
468 PRK08664 aspartate-semialdehyd 95.8 0.034 7.4E-07 52.8 7.6 74 45-122 2-84 (349)
469 PRK09424 pntA NAD(P) transhydr 95.7 0.074 1.6E-06 53.1 10.2 109 39-165 158-287 (509)
470 TIGR01296 asd_B aspartate-semi 95.7 0.019 4.1E-07 54.5 5.8 70 48-124 1-71 (339)
471 PF02254 TrkA_N: TrkA-N domain 95.7 0.09 1.9E-06 41.1 8.8 93 49-164 1-97 (116)
472 PRK07340 ornithine cyclodeamin 95.7 0.046 9.9E-07 51.0 8.1 71 45-123 124-197 (304)
473 PLN02306 hydroxypyruvate reduc 95.7 0.074 1.6E-06 51.3 9.7 101 46-163 165-272 (386)
474 PRK00045 hemA glutamyl-tRNA re 95.7 0.052 1.1E-06 52.9 8.7 106 44-169 180-286 (423)
475 PRK08300 acetaldehyde dehydrog 95.7 0.83 1.8E-05 42.7 16.2 37 45-82 3-39 (302)
476 PRK05690 molybdopterin biosynt 95.6 0.11 2.3E-06 47.1 10.1 35 46-82 32-66 (245)
477 smart00859 Semialdhyde_dh Semi 95.6 0.14 3E-06 40.7 9.6 72 48-123 1-74 (122)
478 PRK07791 short chain dehydroge 95.6 0.34 7.4E-06 44.2 13.5 35 46-82 6-40 (286)
479 PRK08762 molybdopterin biosynt 95.6 0.1 2.2E-06 50.0 10.3 34 46-81 135-168 (376)
480 PRK14179 bifunctional 5,10-met 95.6 0.041 8.9E-07 50.9 7.2 56 45-125 157-212 (284)
481 PRK07041 short chain dehydroge 95.6 0.078 1.7E-06 46.2 8.8 107 51-163 2-123 (230)
482 PRK09730 putative NAD(P)-bindi 95.6 0.11 2.4E-06 45.5 9.8 33 47-81 2-35 (247)
483 KOG4039 Serine/threonine kinas 95.6 0.066 1.4E-06 46.3 7.8 114 45-167 17-135 (238)
484 cd05212 NAD_bind_m-THF_DH_Cycl 95.6 0.06 1.3E-06 44.6 7.5 55 46-125 28-82 (140)
485 TIGR01500 sepiapter_red sepiap 95.6 0.24 5.1E-06 44.2 12.0 33 48-82 2-38 (256)
486 TIGR01289 LPOR light-dependent 95.5 0.1 2.2E-06 48.4 9.9 115 46-164 3-143 (314)
487 TIGR02992 ectoine_eutC ectoine 95.5 0.06 1.3E-06 50.6 8.3 73 46-123 129-203 (326)
488 PRK06141 ornithine cyclodeamin 95.5 0.065 1.4E-06 50.2 8.3 71 45-122 124-197 (314)
489 TIGR03443 alpha_am_amid L-amin 95.4 0.18 3.9E-06 55.9 12.9 117 46-163 971-1109(1389)
490 PF00106 adh_short: short chai 95.4 0.13 2.9E-06 42.2 9.3 116 48-167 2-138 (167)
491 PRK07589 ornithine cyclodeamin 95.4 0.06 1.3E-06 51.2 8.0 71 46-122 129-201 (346)
492 PRK13301 putative L-aspartate 95.4 0.13 2.7E-06 47.2 9.7 67 46-123 2-71 (267)
493 PRK14175 bifunctional 5,10-met 95.4 0.055 1.2E-06 50.1 7.4 57 44-125 156-212 (286)
494 PRK14192 bifunctional 5,10-met 95.4 0.05 1.1E-06 50.4 7.1 55 46-125 159-213 (283)
495 KOG0409 Predicted dehydrogenas 95.4 0.051 1.1E-06 50.4 7.1 96 46-153 35-147 (327)
496 PRK08223 hypothetical protein; 95.3 0.078 1.7E-06 49.1 8.2 35 46-82 27-61 (287)
497 PF00670 AdoHcyase_NAD: S-aden 95.3 0.049 1.1E-06 46.3 6.2 66 46-124 23-88 (162)
498 PRK06719 precorrin-2 dehydroge 95.3 0.25 5.3E-06 41.6 10.5 66 46-122 13-78 (157)
499 PRK06901 aspartate-semialdehyd 95.3 0.021 4.5E-07 53.6 4.3 69 46-123 3-73 (322)
500 PRK14173 bifunctional 5,10-met 95.3 0.065 1.4E-06 49.6 7.5 56 45-125 154-209 (287)
No 1
>cd01337 MDH_glyoxysomal_mitochondrial Glyoxysomal and mitochondrial malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=100.00 E-value=2.1e-59 Score=434.51 Aligned_cols=240 Identities=68% Similarity=1.044 Sum_probs=222.2
Q ss_pred CEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchhHHhhhhcccCCceEEEEecCCCHHhhhCCCCEEEEcCCCCC
Q 022947 47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVPR 126 (289)
Q Consensus 47 ~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~eal~~aDiVIitag~~~ 126 (289)
|||+|||++|+||+++|+.|+.+++++||+|+|++.++|+++||.|+....+++.+.+++|++++++|||+||+|||.|+
T Consensus 1 ~KI~IIGaaG~VG~~~a~~l~~~~~~~elvLiDi~~a~g~alDL~~~~~~~~i~~~~~~~~~y~~~~daDivvitaG~~~ 80 (310)
T cd01337 1 VKVAVLGAAGGIGQPLSLLLKLNPLVSELALYDIVNTPGVAADLSHINTPAKVTGYLGPEELKKALKGADVVVIPAGVPR 80 (310)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCcEEEEEecCccceeehHhHhCCCcceEEEecCCCchHHhcCCCCEEEEeCCCCC
Confidence 69999998899999999999999999999999999778999999999744466643233456799999999999999999
Q ss_pred CCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecCCCcccHHHHHHHHHHhCCCCCCcEEEeeeccHHHHHHHHHHH
Q 022947 127 KPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGVTMLDVVRANTFVAEV 206 (289)
Q Consensus 127 ~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~aiviv~tNPvd~~t~~~~~~~~~~~~~~~~kviG~t~lds~R~~~~lA~~ 206 (289)
+||++|+|++..|.++++++++.|++++|++|++++|||+|+||+++++++++.+++|++||||+|.|||+|+++++|++
T Consensus 81 k~g~tR~dll~~N~~i~~~i~~~i~~~~p~a~vivvtNPvDv~~~i~t~~~~~~s~~p~~rviG~~~LDs~R~~~~la~~ 160 (310)
T cd01337 81 KPGMTRDDLFNINAGIVRDLATAVAKACPKALILIISNPVNSTVPIAAEVLKKAGVYDPKRLFGVTTLDVVRANTFVAEL 160 (310)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccCchhhHHHHHHHHHHHhcCCCHHHEEeeechHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCcceeeeEEccc-CCCeeeeecccccCCCCCChhhHHHHHHHHHhhhHHHhhhcCCCCcchHHHHHHHHHHHHHHh
Q 022947 207 LGLDPREVDVPVVGGH-AGVTILPLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEAKTGAGSATLSMCRHMLLPSLPML 285 (289)
Q Consensus 207 l~v~~~~V~~~V~G~h-g~~~~vp~~S~~~v~~~~~~~~~~~i~~~v~~~g~~i~~~k~g~g~t~~s~A~a~~~~~~ail 285 (289)
+|+++++|+++||||| |+ +|||+||++.+...++++++++|.++|+++|++|+++|.|||+|+||+|.++++++++|+
T Consensus 161 l~v~~~~V~~~v~GeHsGd-s~vp~~S~~~~~~~~~~~~~~~i~~~v~~~g~~Ii~~k~gkg~t~~~~a~a~~~iv~aIl 239 (310)
T cd01337 161 LGLDPAKVNVPVIGGHSGV-TILPLLSQCQPPFTFDQEEIEALTHRIQFGGDEVVKAKAGAGSATLSMAYAGARFANSLL 239 (310)
T ss_pred hCcCHHHEEEEEEecCCCC-ceecccccccccccCCHHHHHHHHHHHHHHHHHHHhCccCCCCcchhHHHHHHHHHHHHH
Confidence 9999999999999999 77 999999999885556666689999999999999999877889999999999999999999
Q ss_pred cC
Q 022947 286 VS 287 (289)
Q Consensus 286 ~~ 287 (289)
+|
T Consensus 240 ~~ 241 (310)
T cd01337 240 RG 241 (310)
T ss_pred Hh
Confidence 65
No 2
>TIGR01772 MDH_euk_gproteo malate dehydrogenase, NAD-dependent. Although malate dehydrogenases have in some cases been mistaken for lactate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of lactate dehydrogenases.
Probab=100.00 E-value=6.5e-58 Score=425.06 Aligned_cols=239 Identities=62% Similarity=0.975 Sum_probs=219.1
Q ss_pred EEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchhHHhhhhcccCCceEEEEecCCCHHhhhCCCCEEEEcCCCCCC
Q 022947 48 KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVPRK 127 (289)
Q Consensus 48 KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~eal~~aDiVIitag~~~~ 127 (289)
||+||||+|+||+++|+.|+.+++++||+|+|++++.|+++||.|......+..+.+.++++++++|||+||+|+|.|++
T Consensus 1 KV~IiGaaG~VG~~~a~~l~~~~~~~elvL~Di~~a~g~a~DL~~~~~~~~i~~~~~~~~~~~~~~daDivvitaG~~~~ 80 (312)
T TIGR01772 1 KVAVLGAAGGIGQPLSLLLKLQPYVSELSLYDIAGAAGVAADLSHIPTAASVKGFSGEEGLENALKGADVVVIPAGVPRK 80 (312)
T ss_pred CEEEECCCCHHHHHHHHHHHhCCCCcEEEEecCCCCcEEEchhhcCCcCceEEEecCCCchHHHcCCCCEEEEeCCCCCC
Confidence 79999988999999999999999999999999998889999999986433454322223456899999999999999999
Q ss_pred CCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecCCCcccHHHHHHHHHHhCCCCCCcEEEeeeccHHHHHHHHHHHc
Q 022947 128 PGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGVTMLDVVRANTFVAEVL 207 (289)
Q Consensus 128 ~g~~r~d~~~~N~~i~~~i~~~i~~~~p~aiviv~tNPvd~~t~~~~~~~~~~~~~~~~kviG~t~lds~R~~~~lA~~l 207 (289)
+|++|+|++..|+++++++++.|++++|+++++++|||+|++|+++++++++.++||++||||+|.|||+||+++||+++
T Consensus 81 ~g~~R~dll~~N~~I~~~i~~~i~~~~p~~iiivvsNPvDv~~~i~t~~~~~~sg~p~~rViG~g~LDsaR~r~~la~~l 160 (312)
T TIGR01772 81 PGMTRDDLFNVNAGIVKDLVAAVAESCPKAMILVITNPVNSTVPIAAEVLKKKGVYDPNKLFGVTTLDIVRANTFVAELK 160 (312)
T ss_pred CCccHHHHHHHhHHHHHHHHHHHHHhCCCeEEEEecCchhhHHHHHHHHHHHhcCCChHHEEeeecchHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999888999999999999999998899999999999999
Q ss_pred CCCCcceeeeEEcccCCCeeeeecccccCCCCCChhhHHHHHHHHHhhhHHHhhhcCCCCcchHHHHHHHHHHHHHHhc
Q 022947 208 GLDPREVDVPVVGGHAGVTILPLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEAKTGAGSATLSMCRHMLLPSLPMLV 286 (289)
Q Consensus 208 ~v~~~~V~~~V~G~hg~~~~vp~~S~~~v~~~~~~~~~~~i~~~v~~~g~~i~~~k~g~g~t~~s~A~a~~~~~~ail~ 286 (289)
+++|++|+++||||||+++|||+||++++...++++++++|.++|+++|++|+++|.|||+|+||+|.|+++++++|++
T Consensus 161 ~v~~~~v~~~ViGeHg~~s~vp~~S~~~~~~~~~~~~~~~i~~~v~~~g~~Ii~~k~gkg~t~~~ia~a~~~iv~ail~ 239 (312)
T TIGR01772 161 GKDPMEVNVPVIGGHSGETIIPLISQCPGKVLFTEDQLEALIHRIQNAGTEVVKAKAGAGSATLSMAFAGARFVLSLVR 239 (312)
T ss_pred CCCHHHeEEEEEEecCCCccccccccccccCCCCHHHHHHHHHHHHHHHHHHHhCccCCCChhHHHHHHHHHHHHHHHH
Confidence 9999999999999998779999999998654466666899999999999999998768899999999999999999994
No 3
>COG0039 Mdh Malate/lactate dehydrogenases [Energy production and conversion]
Probab=100.00 E-value=9.1e-58 Score=420.46 Aligned_cols=233 Identities=41% Similarity=0.626 Sum_probs=210.7
Q ss_pred CEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCC--chhHHhhhhcccCC--ceEEEEecCCCHHhhhCCCCEEEEcC
Q 022947 47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTN--AVVRGFLGQQQLEDALTGMDIVIIPA 122 (289)
Q Consensus 47 ~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~--~~g~~~DL~~~~~~--~~v~~~~~t~d~~eal~~aDiVIita 122 (289)
+||+|||| |+||+++|+.|+.+++.+|++|+|+++ ++|+++||.|+... ...... .+.+| ++++|||+||++|
T Consensus 1 ~KVaviGa-G~VG~s~a~~l~~~~~~~el~LiDi~~~~~~G~a~DL~~~~~~~~~~~~i~-~~~~y-~~~~~aDiVvitA 77 (313)
T COG0039 1 MKVAVIGA-GNVGSSLAFLLLLQGLGSELVLIDINEEKAEGVALDLSHAAAPLGSDVKIT-GDGDY-EDLKGADIVVITA 77 (313)
T ss_pred CeEEEECC-ChHHHHHHHHHhcccccceEEEEEcccccccchhcchhhcchhccCceEEe-cCCCh-hhhcCCCEEEEeC
Confidence 59999999 999999999998888888999999996 79999999998752 233332 22455 8899999999999
Q ss_pred CCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecCCCcccHHHHHHHHHHhCCCCCCcEEEe-eeccHHHHHH
Q 022947 123 GVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVVRANT 201 (289)
Q Consensus 123 g~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~aiviv~tNPvd~~t~~~~~~~~~~~~~~~~kviG~-t~lds~R~~~ 201 (289)
|.||||||+|+|++..|+++++++++++++++||++++++|||+|+|||++ ++.+++|++||||+ |.|||+||++
T Consensus 78 G~prKpGmtR~DLl~~Na~I~~~i~~~i~~~~~d~ivlVvtNPvD~~ty~~----~k~sg~p~~rvig~gt~LDsaR~~~ 153 (313)
T COG0039 78 GVPRKPGMTRLDLLEKNAKIVKDIAKAIAKYAPDAIVLVVTNPVDILTYIA----MKFSGFPKNRVIGSGTVLDSARFRT 153 (313)
T ss_pred CCCCCCCCCHHHHHHhhHHHHHHHHHHHHhhCCCeEEEEecCcHHHHHHHH----HHhcCCCccceecccchHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999865 67889999999999 8999999999
Q ss_pred HHHHHcCCCCcceeeeEEcccCCCeeeeecccccCCCC--------CChhhHHHHHHHHHhhhHHHhhhcCCCCcchHHH
Q 022947 202 FVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSCS--------LTPTEIDYLTDRIQNGGTEVVEAKTGAGSATLSM 273 (289)
Q Consensus 202 ~lA~~l~v~~~~V~~~V~G~hg~~~~vp~~S~~~v~~~--------~~~~~~~~i~~~v~~~g~~i~~~k~g~g~t~~s~ 273 (289)
+||+++++++++|+++|+||||+ +|||+||++++++. .+++++++|.++||++|++|+++| |.| |+||+
T Consensus 154 ~lae~~~v~~~~V~~~ViGeHGd-t~vp~~S~a~v~G~pl~~~~~~~~~~~~~~i~~~v~~~g~eII~~k-G~~-t~~~~ 230 (313)
T COG0039 154 FLAEKLGVSPKDVHAYVIGEHGD-TMVPLWSQATVGGKPLEELLKEDTEEDLEELIERVRNAGAEIIEAK-GAG-TYYGP 230 (313)
T ss_pred HHHHHhCCChhHceeeEeccCCC-ceEEeeeeeeECCEEHHHHhhcccHhHHHHHHHHHHhhHHHHHHcc-Ccc-chhhH
Confidence 99999999999999999999998 99999999998651 223567899999999999999998 555 99999
Q ss_pred HHHHHHHHHHHhcCCC
Q 022947 274 CRHMLLPSLPMLVSEA 289 (289)
Q Consensus 274 A~a~~~~~~ail~~~~ 289 (289)
|.|+++|+++|++|++
T Consensus 231 A~a~a~~~~ail~d~~ 246 (313)
T COG0039 231 AAALARMVEAILRDEK 246 (313)
T ss_pred HHHHHHHHHHHHcCCC
Confidence 9999999999999973
No 4
>PLN00106 malate dehydrogenase
Probab=100.00 E-value=2.3e-56 Score=416.23 Aligned_cols=252 Identities=75% Similarity=1.141 Sum_probs=232.4
Q ss_pred cccccCCCCCCCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchhHHhhhhcccCCceEEEEecCCCHHhhhCCC
Q 022947 36 MDCRAKGGSPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGM 115 (289)
Q Consensus 36 ~~~~~~~~~~~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~eal~~a 115 (289)
..|+.+++-.+.||+||||+|+||+++++.|+.+++++||+|+|++++.++++||.|+.....+..+.+++|++++++||
T Consensus 8 ~~~~~~~~~~~~KV~IiGaaG~VG~~~a~~l~~~~~~~el~L~Di~~~~g~a~Dl~~~~~~~~i~~~~~~~d~~~~l~~a 87 (323)
T PLN00106 8 RACRAKGGAPGFKVAVLGAAGGIGQPLSLLMKMNPLVSELHLYDIANTPGVAADVSHINTPAQVRGFLGDDQLGDALKGA 87 (323)
T ss_pred hccccccCCCCCEEEEECCCCHHHHHHHHHHHhCCCCCEEEEEecCCCCeeEchhhhCCcCceEEEEeCCCCHHHHcCCC
Confidence 36999999999999999988999999999999999999999999998889999999987655666544566788999999
Q ss_pred CEEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecCCCcccHHHHHHHHHHhCCCCCCcEEEeeecc
Q 022947 116 DIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGVTMLD 195 (289)
Q Consensus 116 DiVIitag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~aiviv~tNPvd~~t~~~~~~~~~~~~~~~~kviG~t~ld 195 (289)
|+||++||.|+++|++|.|++..|.++++++++.+++++|+++++++|||+|.+++++++++++.+++||+|+||+|.||
T Consensus 88 DiVVitAG~~~~~g~~R~dll~~N~~i~~~i~~~i~~~~p~aivivvSNPvD~~~~i~t~~~~~~s~~p~~~viG~~~LD 167 (323)
T PLN00106 88 DLVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEAVAKHCPNALVNIISNPVNSTVPIAAEVLKKAGVYDPKKLFGVTTLD 167 (323)
T ss_pred CEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCCCccccHHHHHHHHHHcCCCCcceEEEEecch
Confidence 99999999999999999999999999999999999999999999999999996666666777889999999999999999
Q ss_pred HHHHHHHHHHHcCCCCcceeeeEEcccCCCeeeeecccccCCCCCChhhHHHHHHHHHhhhHHHhhhcCCCCcchHHHHH
Q 022947 196 VVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEAKTGAGSATLSMCR 275 (289)
Q Consensus 196 s~R~~~~lA~~l~v~~~~V~~~V~G~hg~~~~vp~~S~~~v~~~~~~~~~~~i~~~v~~~g~~i~~~k~g~g~t~~s~A~ 275 (289)
++||++++|+++|+++.+|+++|+||||+++|||+||++.+...++++++++|.++|+++|++|+++|.|||+|+||+|.
T Consensus 168 s~Rl~~~lA~~lgv~~~~V~~~ViGeHg~~s~vp~~S~~~~~~~~~~~~~~~i~~~v~~~g~~Ii~~k~~kg~t~~~~a~ 247 (323)
T PLN00106 168 VVRANTFVAEKKGLDPADVDVPVVGGHAGITILPLLSQATPKVSFTDEEIEALTKRIQNGGTEVVEAKAGAGSATLSMAY 247 (323)
T ss_pred HHHHHHHHHHHhCCChhheEEEEEEeCCCccEeeehhcceecccCCHHHHHHHHHHHHHHHHHHHhCccCCCCchHHHHH
Confidence 99999999999999999999999999977799999999977544666679999999999999999987678999999999
Q ss_pred HHHHHHHHHhcC
Q 022947 276 HMLLPSLPMLVS 287 (289)
Q Consensus 276 a~~~~~~ail~~ 287 (289)
++++++++|++|
T Consensus 248 a~~~ii~ail~~ 259 (323)
T PLN00106 248 AAARFADACLRG 259 (323)
T ss_pred HHHHHHHHHHhc
Confidence 999999999995
No 5
>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=100.00 E-value=2.9e-55 Score=406.99 Aligned_cols=230 Identities=29% Similarity=0.405 Sum_probs=208.2
Q ss_pred EEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCC--chhHHhhhhcccCC---ceEEEEecCCCHHhhhCCCCEEEEcC
Q 022947 48 KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTN---AVVRGFLGQQQLEDALTGMDIVIIPA 122 (289)
Q Consensus 48 KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~--~~g~~~DL~~~~~~---~~v~~~~~t~d~~eal~~aDiVIita 122 (289)
||+|||+ |+||+++|+.|+.+++++||+|+|+++ ++|+++||.|...+ ..++... +|| ++++|||+||+||
T Consensus 1 Ki~IIGa-G~VG~~~a~~l~~~~~~~elvL~Di~~~~a~g~a~DL~~~~~~~~~~~~~i~~--~~y-~~~~~aDivvita 76 (307)
T cd05290 1 KLVVIGA-GHVGSAVLNYALALGLFSEIVLIDVNEGVAEGEALDFHHATALTYSTNTKIRA--GDY-DDCADADIIVITA 76 (307)
T ss_pred CEEEECC-CHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHHHHHHHhhhccCCCCCEEEEE--CCH-HHhCCCCEEEECC
Confidence 7999998 999999999999999999999999987 78999999997542 2455443 465 8899999999999
Q ss_pred CCCCCCCCc--hhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecCCCcccHHHHHHHHHHhCCCCCCcEEEe-eeccHHHH
Q 022947 123 GVPRKPGMT--RDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVVRA 199 (289)
Q Consensus 123 g~~~~~g~~--r~d~~~~N~~i~~~i~~~i~~~~p~aiviv~tNPvd~~t~~~~~~~~~~~~~~~~kviG~-t~lds~R~ 199 (289)
|.|++||++ |+|++..|+++++++++.+++++|+++++++|||+|+|||++ ++.+|||++||||+ |.|||+||
T Consensus 77 G~~~kpg~tr~R~dll~~N~~I~~~i~~~i~~~~p~~i~ivvsNPvDv~t~~~----~k~sg~p~~rviG~gt~LDs~R~ 152 (307)
T cd05290 77 GPSIDPGNTDDRLDLAQTNAKIIREIMGNITKVTKEAVIILITNPLDIAVYIA----ATEFDYPANKVIGTGTMLDTARL 152 (307)
T ss_pred CCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEecCcHHHHHHHH----HHHhCcChhheecccchHHHHHH
Confidence 999999999 699999999999999999999999999999999999999765 66789999999999 89999999
Q ss_pred HHHHHHHcCCCCcceeeeEEcccCCCeeeeecccccCCCC-----C-----ChhhHHHHHHHHHhhhHHHhhhcCCCCcc
Q 022947 200 NTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSCS-----L-----TPTEIDYLTDRIQNGGTEVVEAKTGAGSA 269 (289)
Q Consensus 200 ~~~lA~~l~v~~~~V~~~V~G~hg~~~~vp~~S~~~v~~~-----~-----~~~~~~~i~~~v~~~g~~i~~~k~g~g~t 269 (289)
++++|+++|++|++|++|||||||+ +|||+||++++++. + ++.++++|.++|+++|++|++.| |+|
T Consensus 153 ~~~la~~l~v~~~~V~~~ViGeHGd-s~vp~wS~~~v~g~~l~~~~~~~~~~~~~~~~i~~~v~~~g~~Ii~~K---G~t 228 (307)
T cd05290 153 RRIVADKYGVDPKNVTGYVLGEHGS-HAFPVWSLVNIAGLPLDELEALFGKEPIDKDELLEEVVQAAYDVFNRK---GWT 228 (307)
T ss_pred HHHHHHHhCCCcccEEEEEEecCCC-ceEEeeeeeEECCEEHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHcc---Cee
Confidence 9999999999999999999999998 99999999998641 1 12247899999999999999954 789
Q ss_pred hHHHHHHHHHHHHHHhcCCC
Q 022947 270 TLSMCRHMLLPSLPMLVSEA 289 (289)
Q Consensus 270 ~~s~A~a~~~~~~ail~~~~ 289 (289)
+|++|.++++++++|++|+.
T Consensus 229 ~~~ia~a~~~ii~ail~d~~ 248 (307)
T cd05290 229 NAGIAKSASRLIKAILLDER 248 (307)
T ss_pred hHHHHHHHHHHHHHHHhCCC
Confidence 99999999999999999863
No 6
>KOG1495 consensus Lactate dehydrogenase [Energy production and conversion]
Probab=100.00 E-value=8.5e-55 Score=386.01 Aligned_cols=230 Identities=23% Similarity=0.367 Sum_probs=213.1
Q ss_pred CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCC--chhHHhhhhcccC---CceEEEEecCCCHHhhhCCCCEEEE
Q 022947 46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDT---NAVVRGFLGQQQLEDALTGMDIVII 120 (289)
Q Consensus 46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~--~~g~~~DL~~~~~---~~~v~~~~~t~d~~eal~~aDiVIi 120 (289)
..||+|+|+ |.||+++|+.++.+++.+|++|+|.++ ++|++|||+|... .+++.. ..|| .+.+++++||+
T Consensus 20 ~~KItVVG~-G~VGmAca~siL~k~Ladel~lvDv~~dklkGE~MDLqH~s~f~~~~~V~~---~~Dy-~~sa~S~lvIi 94 (332)
T KOG1495|consen 20 HNKITVVGV-GQVGMACAISILLKGLADELVLVDVNEDKLKGEMMDLQHGSAFLSTPNVVA---SKDY-SVSANSKLVII 94 (332)
T ss_pred CceEEEEcc-chHHHHHHHHHHHhhhhhceEEEecCcchhhhhhhhhccccccccCCceEe---cCcc-cccCCCcEEEE
Confidence 569999999 999999999999999999999999998 7999999999874 344442 3576 78999999999
Q ss_pred cCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecCCCcccHHHHHHHHHHhCCCCCCcEEEe-eeccHHHH
Q 022947 121 PAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVVRA 199 (289)
Q Consensus 121 tag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~aiviv~tNPvd~~t~~~~~~~~~~~~~~~~kviG~-t~lds~R~ 199 (289)
|||..+++|++|++++++|+.+++.+.+++.+|.|+++++++|||+|+|||++ ||.+|||++||||. |.|||+||
T Consensus 95 TAGarq~~gesRL~lvQrNV~ifK~iip~lv~ySpd~~llvvSNPVDilTYv~----wKLSgfP~nRViGsGcnLDsaRF 170 (332)
T KOG1495|consen 95 TAGARQSEGESRLDLVQRNVDIFKAIIPALVKYSPDCILLVVSNPVDILTYVT----WKLSGFPKNRVIGSGCNLDSARF 170 (332)
T ss_pred ecCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEecCchHHHHHHH----HHHcCCcccceeccCcCccHHHH
Confidence 99999999999999999999999999999999999999999999999999764 88999999999999 99999999
Q ss_pred HHHHHHHcCCCCcceeeeEEcccCCCeeeeecccccCCC------------CCChhhHHHHHHHHHhhhHHHhhhcCCCC
Q 022947 200 NTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSC------------SLTPTEIDYLTDRIQNGGTEVVEAKTGAG 267 (289)
Q Consensus 200 ~~~lA~~l~v~~~~V~~~V~G~hg~~~~vp~~S~~~v~~------------~~~~~~~~~i~~~v~~~g~~i~~~k~g~g 267 (289)
|++++++||++|++++++|+||||| +-||+||.+.+.+ ..+++.|+++.++|...+|+|+++| |
T Consensus 171 ryLi~~~Lg~~pss~hgwIiGEHGd-SsV~vWSgvniAGv~l~~l~~~~~t~~d~e~w~eihK~v~~sayeviklK---G 246 (332)
T KOG1495|consen 171 RYLIGNRLGVHPSSCHGWIIGEHGD-SSVPVWSGVNIAGVSLKDLNPDLGTDYDPENWKEIHKQVVDSAYEVIKLK---G 246 (332)
T ss_pred HHHHHHHhCCCcccceEEEeeccCC-ccceecccccccceEHhHhChhhcCCCCHHHHHHHHHHHHHHHHHHHHhc---C
Confidence 9999999999999999999999999 8999999998743 2466779999999999999999986 7
Q ss_pred cchHHHHHHHHHHHHHHhcCC
Q 022947 268 SATLSMCRHMLLPSLPMLVSE 288 (289)
Q Consensus 268 ~t~~s~A~a~~~~~~ail~~~ 288 (289)
+|+|++|.++++++++|++|+
T Consensus 247 yTswaIglsva~l~~ail~n~ 267 (332)
T KOG1495|consen 247 YTSWAIGLSVADLAQAILRNL 267 (332)
T ss_pred chHHHHHHHHHHHHHHHHhCc
Confidence 999999999999999999996
No 7
>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=100.00 E-value=6.2e-54 Score=399.09 Aligned_cols=234 Identities=26% Similarity=0.360 Sum_probs=209.7
Q ss_pred CCCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCC--chhHHhhhhcccCCce-EEEEecCCCHHhhhCCCCEEEEc
Q 022947 45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTNAV-VRGFLGQQQLEDALTGMDIVIIP 121 (289)
Q Consensus 45 ~~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~--~~g~~~DL~~~~~~~~-v~~~~~t~d~~eal~~aDiVIit 121 (289)
..+||+|||+ |+||+++++.|+..++.+||+|+|+++ +.|+++||+|+..... ... ..++|| ++++|||+||+|
T Consensus 2 ~~~Ki~IiGa-G~VG~~~a~~l~~~~~~~el~LiD~~~~~~~g~a~Dl~~~~~~~~~~~v-~~~~dy-~~~~~adivvit 78 (312)
T cd05293 2 PRNKVTVVGV-GQVGMACAISILAKGLADELVLVDVVEDKLKGEAMDLQHGSAFLKNPKI-EADKDY-SVTANSKVVIVT 78 (312)
T ss_pred CCCEEEEECC-CHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHHHHHhhccCCCCEE-EECCCH-HHhCCCCEEEEC
Confidence 3569999998 999999999999999999999999987 6899999999873221 122 224577 679999999999
Q ss_pred CCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecCCCcccHHHHHHHHHHhCCCCCCcEEEe-eeccHHHHH
Q 022947 122 AGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVVRAN 200 (289)
Q Consensus 122 ag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~aiviv~tNPvd~~t~~~~~~~~~~~~~~~~kviG~-t~lds~R~~ 200 (289)
+|.++++|++|.|++.+|+++++++++.|++++|+++++++|||+|+||+++ ++.+++|++||||+ |.||++|++
T Consensus 79 aG~~~k~g~~R~dll~~N~~i~~~~~~~i~~~~p~~~vivvsNP~d~~t~~~----~k~sg~p~~~viG~gt~Ld~~R~~ 154 (312)
T cd05293 79 AGARQNEGESRLDLVQRNVDIFKGIIPKLVKYSPNAILLVVSNPVDIMTYVA----WKLSGLPKHRVIGSGCNLDSARFR 154 (312)
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEccChHHHHHHHH----HHHhCCCHHHEEecCchHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999764 66789999999999 999999999
Q ss_pred HHHHHHcCCCCcceeeeEEcccCCCeeeeecccccCCCC------------CChhhHHHHHHHHHhhhHHHhhhcCCCCc
Q 022947 201 TFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSCS------------LTPTEIDYLTDRIQNGGTEVVEAKTGAGS 268 (289)
Q Consensus 201 ~~lA~~l~v~~~~V~~~V~G~hg~~~~vp~~S~~~v~~~------------~~~~~~~~i~~~v~~~g~~i~~~k~g~g~ 268 (289)
+++|+++++++++|+++||||||+ ++||+||++++++. .+++++++|.++|+++|++|++.| |+
T Consensus 155 ~~la~~l~v~~~~v~~~v~GeHG~-s~vp~~S~~~i~g~~l~~~~~~~~~~~~~~~~~~i~~~v~~~g~~Ii~~k---g~ 230 (312)
T cd05293 155 YLIAERLGVAPSSVHGWIIGEHGD-SSVPVWSGVNVAGVRLQDLNPDIGTDKDPEKWKEVHKQVVDSAYEVIKLK---GY 230 (312)
T ss_pred HHHHHHhCCChhhEEEEEeecCCC-CccccceeceECCEEHHHHhhhccccccHHHHHHHHHHHHHHHHHHHHhc---CC
Confidence 999999999999999999999998 99999999998641 123458899999999999999954 78
Q ss_pred chHHHHHHHHHHHHHHhcCCC
Q 022947 269 ATLSMCRHMLLPSLPMLVSEA 289 (289)
Q Consensus 269 t~~s~A~a~~~~~~ail~~~~ 289 (289)
|+|++|.++++++++|++|+.
T Consensus 231 t~~~~a~a~~~ii~ail~d~~ 251 (312)
T cd05293 231 TSWAIGLSVADLVDAILRNTG 251 (312)
T ss_pred chHHHHHHHHHHHHHHHcCCC
Confidence 999999999999999999863
No 8
>PTZ00325 malate dehydrogenase; Provisional
Probab=100.00 E-value=1.5e-53 Score=397.00 Aligned_cols=242 Identities=62% Similarity=0.926 Sum_probs=218.5
Q ss_pred CCCCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchhHHhhhhcccCCceEEEEecCCCHHhhhCCCCEEEEcCC
Q 022947 44 SPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAG 123 (289)
Q Consensus 44 ~~~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~eal~~aDiVIitag 123 (289)
.+++||+|||++|.||+++++.|+..++.+||+|+|++.+.++++||.|......+.......+++++++|||+||+++|
T Consensus 6 ~~~~KI~IiGaaG~VGs~~a~~l~~~~~~~elvL~Di~~~~g~a~Dl~~~~~~~~v~~~td~~~~~~~l~gaDvVVitaG 85 (321)
T PTZ00325 6 LKMFKVAVLGAAGGIGQPLSLLLKQNPHVSELSLYDIVGAPGVAADLSHIDTPAKVTGYADGELWEKALRGADLVLICAG 85 (321)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHhcCCCCCEEEEEecCCCcccccchhhcCcCceEEEecCCCchHHHhCCCCEEEECCC
Confidence 35779999998899999999999999999999999996588999999998654344433222343589999999999999
Q ss_pred CCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecCCCcccHHHHHHHHHHhCCCCCCcEEEeeeccHHHHHHHH
Q 022947 124 VPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGVTMLDVVRANTFV 203 (289)
Q Consensus 124 ~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~aiviv~tNPvd~~t~~~~~~~~~~~~~~~~kviG~t~lds~R~~~~l 203 (289)
.|++++++|.+++..|+++++++++.|++++|+++++++|||+|+|||++.+.+++.+++||+||||++.|||+||+++|
T Consensus 86 ~~~~~~~tR~dll~~N~~i~~~i~~~i~~~~~~~iviv~SNPvdv~~~~~~~~~~~~sg~p~~~viG~g~LDs~R~r~~l 165 (321)
T PTZ00325 86 VPRKPGMTRDDLFNTNAPIVRDLVAAVASSAPKAIVGIVSNPVNSTVPIAAETLKKAGVYDPRKLFGVTTLDVVRARKFV 165 (321)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHHHHhhhhhccCCChhheeechhHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999987656678899999999999889999999999
Q ss_pred HHHcCCCCcceeeeEEcccCCCeeeeecccccCCCCCChhhHHHHHHHHHhhhHHHhhhcCCCCcchHHHHHHHHHHHHH
Q 022947 204 AEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEAKTGAGSATLSMCRHMLLPSLP 283 (289)
Q Consensus 204 A~~l~v~~~~V~~~V~G~hg~~~~vp~~S~~~v~~~~~~~~~~~i~~~v~~~g~~i~~~k~g~g~t~~s~A~a~~~~~~a 283 (289)
|++++++|++|+++||||||++++||+||++. .+++++++++|.++|+++|++|+++|+|||+|+||+|.++++++++
T Consensus 166 a~~l~v~~~~V~~~VlGeHGd~s~v~~~S~~g--~~l~~~~~~~i~~~v~~~g~~Ii~~k~~kg~t~~g~a~a~~~i~~a 243 (321)
T PTZ00325 166 AEALGMNPYDVNVPVVGGHSGVTIVPLLSQTG--LSLPEEQVEQITHRVQVGGDEVVKAKEGAGSATLSMAYAAAEWSTS 243 (321)
T ss_pred HHHhCcChhheEEEEEeecCCcccccchhccC--CCCCHHHHHHHHHHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHH
Confidence 99999999999999999999857999999993 3577777999999999999999999878899999999999999999
Q ss_pred HhcC
Q 022947 284 MLVS 287 (289)
Q Consensus 284 il~~ 287 (289)
|++|
T Consensus 244 il~~ 247 (321)
T PTZ00325 244 VLKA 247 (321)
T ss_pred HHhh
Confidence 9965
No 9
>PLN02602 lactate dehydrogenase
Probab=100.00 E-value=4.2e-53 Score=398.25 Aligned_cols=232 Identities=24% Similarity=0.385 Sum_probs=208.6
Q ss_pred CEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCC--chhHHhhhhcccCC-ceEEEEecCCCHHhhhCCCCEEEEcCC
Q 022947 47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTN-AVVRGFLGQQQLEDALTGMDIVIIPAG 123 (289)
Q Consensus 47 ~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~--~~g~~~DL~~~~~~-~~v~~~~~t~d~~eal~~aDiVIitag 123 (289)
+||+|||+ |+||+++++.|+..++++||+|+|+++ +.|+++||.|+... ...... .++|| ++++|||+||++||
T Consensus 38 ~KI~IIGa-G~VG~~~a~~l~~~~l~~el~LiDi~~~~~~g~a~DL~~~~~~~~~~~i~-~~~dy-~~~~daDiVVitAG 114 (350)
T PLN02602 38 TKVSVVGV-GNVGMAIAQTILTQDLADELALVDVNPDKLRGEMLDLQHAAAFLPRTKIL-ASTDY-AVTAGSDLCIVTAG 114 (350)
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCCCCEEEEEeCCCchhhHHHHHHHhhhhcCCCCEEE-eCCCH-HHhCCCCEEEECCC
Confidence 69999998 999999999999999999999999988 68999999998642 223332 23466 67999999999999
Q ss_pred CCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecCCCcccHHHHHHHHHHhCCCCCCcEEEe-eeccHHHHHHH
Q 022947 124 VPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVVRANTF 202 (289)
Q Consensus 124 ~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~aiviv~tNPvd~~t~~~~~~~~~~~~~~~~kviG~-t~lds~R~~~~ 202 (289)
.|+++|++|.|++..|+++++++++.|+++||+++++++|||+|++|+++ ++.++||++||||+ |.||++|++++
T Consensus 115 ~~~k~g~tR~dll~~N~~I~~~i~~~I~~~~p~~ivivvtNPvdv~t~~~----~k~sg~p~~rviG~gt~LDs~R~r~~ 190 (350)
T PLN02602 115 ARQIPGESRLNLLQRNVALFRKIIPELAKYSPDTILLIVSNPVDVLTYVA----WKLSGFPANRVIGSGTNLDSSRFRFL 190 (350)
T ss_pred CCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCchHHHHHHH----HHHhCCCHHHEEeecchHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999765 56678999999999 69999999999
Q ss_pred HHHHcCCCCcceeeeEEcccCCCeeeeecccccCCC------------CCChhhHHHHHHHHHhhhHHHhhhcCCCCcch
Q 022947 203 VAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSC------------SLTPTEIDYLTDRIQNGGTEVVEAKTGAGSAT 270 (289)
Q Consensus 203 lA~~l~v~~~~V~~~V~G~hg~~~~vp~~S~~~v~~------------~~~~~~~~~i~~~v~~~g~~i~~~k~g~g~t~ 270 (289)
||+++|+++++|+++||||||+ ++||+||++++++ .+++++++++.++++++|++|++.| |+|+
T Consensus 191 lA~~l~v~~~~V~~~ViGeHGd-s~vp~wS~~~i~G~pl~~~~~~~~~~~~~~~~~~i~~~v~~~g~eIi~~K---G~t~ 266 (350)
T PLN02602 191 IADHLDVNAQDVQAYIVGEHGD-SSVALWSSVSVGGVPVLSFLEKQQIAYEKETLEEIHRAVVDSAYEVIKLK---GYTS 266 (350)
T ss_pred HHHHhCCCccceeeeEEecCCC-ceEeeeeeeeECCEEHHHHhhccCCccCHHHHHHHHHHHHHHHHHHHhcC---CccH
Confidence 9999999999999999999998 9999999998853 1233457899999999999999954 7899
Q ss_pred HHHHHHHHHHHHHHhcCCC
Q 022947 271 LSMCRHMLLPSLPMLVSEA 289 (289)
Q Consensus 271 ~s~A~a~~~~~~ail~~~~ 289 (289)
|++|.++++++++|++|+.
T Consensus 267 ~gia~a~a~ii~ail~d~~ 285 (350)
T PLN02602 267 WAIGYSVASLVRSLLRDQR 285 (350)
T ss_pred HHHHHHHHHHHHHHHhcCC
Confidence 9999999999999999973
No 10
>TIGR01759 MalateDH-SF1 malate dehydrogenase. This model represents a family of malate dehydrogenases in bacteria and eukaryotes which utilize either NAD or NADP depending on the species and context. MDH interconverts malate and oxaloacetate and is a part of the citric acid cycle as well as the C4 cycle in certain photosynthetic organisms.
Probab=100.00 E-value=3e-53 Score=395.75 Aligned_cols=234 Identities=28% Similarity=0.387 Sum_probs=207.6
Q ss_pred CCCCEEEEEcCCCccHHHHHHHHHhCCCcc-----EEEEEeCCC----chhHHhhhhcccC-C-ceEEEEecCCCHHhhh
Q 022947 44 SPGFKVAVLGAAGGIGQPLAMLMKINPLVS-----VLHLYDVVN----TPGVTADISHMDT-N-AVVRGFLGQQQLEDAL 112 (289)
Q Consensus 44 ~~~~KI~IIGaaG~VGs~la~~L~~~g~~~-----eI~LvD~~~----~~g~~~DL~~~~~-~-~~v~~~~~t~d~~eal 112 (289)
+++.||+||||+|+||+++++.|+.+++++ ||+|+|+++ ++|+++||.|+.. . ..+... +++ ++++
T Consensus 1 ~~p~KV~IIGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~~~~~~~~i~--~~~-~~~~ 77 (323)
T TIGR01759 1 KKPVRVAVTGAAGQIGYSLLFRIASGELFGKDQPVVLHLLDIPPAMKALEGVAMELEDCAFPLLAGVVAT--TDP-EEAF 77 (323)
T ss_pred CCCeEEEEECCCcHHHHHHHHHHHhCCcccCCCccEEEEEecCCcccccchHHHHHhhccccccCCcEEe--cCh-HHHh
Confidence 367899999988999999999999999999 999999964 6899999999862 1 223322 344 4899
Q ss_pred CCCCEEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCC-CcEEEEecCCCcccHHHHHHHHHHhC-CCCCCcEEE
Q 022947 113 TGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCP-KAIVNLISNPVNSTVPIAAEVFKKVG-TYDPKRLLG 190 (289)
Q Consensus 113 ~~aDiVIitag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p-~aiviv~tNPvd~~t~~~~~~~~~~~-~~~~~kviG 190 (289)
+|||+||+|||.|+++|++|+|++..|++++++++++|++++| +++++++|||+|+|||++ ++.+ +||++||||
T Consensus 78 ~daDvVVitAG~~~k~g~tR~dll~~Na~i~~~i~~~i~~~~~~~~iiivvsNPvDv~t~v~----~k~s~g~p~~rViG 153 (323)
T TIGR01759 78 KDVDAALLVGAFPRKPGMERADLLSKNGKIFKEQGKALNKVAKKDVKVLVVGNPANTNALIA----SKNAPDIPPKNFSA 153 (323)
T ss_pred CCCCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEeCCcHHHHHHHH----HHHcCCCCHHHEEE
Confidence 9999999999999999999999999999999999999999998 999999999999999765 6678 999999999
Q ss_pred eeeccHHHHHHHHHHHcCCCCccee-eeEEcccCCCeeeeecccccCCC----C-CChhh--HHHHHHHHHhhhHHHhhh
Q 022947 191 VTMLDVVRANTFVAEVLGLDPREVD-VPVVGGHAGVTILPLLSQVKPSC----S-LTPTE--IDYLTDRIQNGGTEVVEA 262 (289)
Q Consensus 191 ~t~lds~R~~~~lA~~l~v~~~~V~-~~V~G~hg~~~~vp~~S~~~v~~----~-~~~~~--~~~i~~~v~~~g~~i~~~ 262 (289)
+|.||++||+++||++++++|++|+ .+||||||+ ++||+||++++++ . ++++. +++|.++++++|++|++.
T Consensus 154 ~t~LDs~R~r~~la~~l~v~~~~V~~~~V~GeHG~-s~v~~~S~~~v~g~pl~~~~~~~~~~~~~i~~~v~~~g~~Ii~~ 232 (323)
T TIGR01759 154 MTRLDHNRAKYQLAAKAGVPVSDVKNVIIWGNHSN-TQVPDFTHATVDGRPVKEVIKDDKWLEGEFIPTVQQRGAAVIEA 232 (323)
T ss_pred eeHHHHHHHHHHHHHHhCcChHHeEEeEEEecCCC-ceeeccccCEECCccHHHHhcchhhHHHHHHHHHHhhHHHHHhc
Confidence 9999999999999999999999996 569999998 9999999999864 1 33333 689999999999999996
Q ss_pred cCCCCcchH-HHHHHHHHHHHHHhcCC
Q 022947 263 KTGAGSATL-SMCRHMLLPSLPMLVSE 288 (289)
Q Consensus 263 k~g~g~t~~-s~A~a~~~~~~ail~~~ 288 (289)
| |+|+| ++|.++++++++|++|+
T Consensus 233 k---G~t~~~~~a~a~~~iv~ail~~~ 256 (323)
T TIGR01759 233 R---GASSAASAANAAIDHVRDWVTGT 256 (323)
T ss_pred c---CCcchHHHHHHHHHHHHHHHcCC
Confidence 5 67888 57799999999999996
No 11
>PRK05086 malate dehydrogenase; Provisional
Probab=100.00 E-value=5.8e-52 Score=386.04 Aligned_cols=239 Identities=60% Similarity=0.922 Sum_probs=215.2
Q ss_pred CEEEEEcCCCccHHHHHHHHHh-CCCccEEEEEeCCC-chhHHhhhhcccCCceEEEEecCCCHHhhhCCCCEEEEcCCC
Q 022947 47 FKVAVLGAAGGIGQPLAMLMKI-NPLVSVLHLYDVVN-TPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGV 124 (289)
Q Consensus 47 ~KI~IIGaaG~VGs~la~~L~~-~g~~~eI~LvD~~~-~~g~~~DL~~~~~~~~v~~~~~t~d~~eal~~aDiVIitag~ 124 (289)
|||+||||+|.||+++++.|.. .+...+++|+|+++ ..++++|+.|......+... ..+|++++++++|+||+|+|.
T Consensus 1 ~KI~IIGAsG~VG~aia~~l~~~~~~~~el~L~d~~~~~~g~alDl~~~~~~~~i~~~-~~~d~~~~l~~~DiVIitaG~ 79 (312)
T PRK05086 1 MKVAVLGAAGGIGQALALLLKTQLPAGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGF-SGEDPTPALEGADVVLISAGV 79 (312)
T ss_pred CEEEEECCCCHHHHHHHHHHHcCCCCccEEEEEecCCCCcceehhhhcCCCCceEEEe-CCCCHHHHcCCCCEEEEcCCC
Confidence 6999999999999999998865 56778999999987 56788999985322234331 135767899999999999999
Q ss_pred CCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecCCCcccHHHHHHHHHHhCCCCCCcEEEeeeccHHHHHHHHH
Q 022947 125 PRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGVTMLDVVRANTFVA 204 (289)
Q Consensus 125 ~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~aiviv~tNPvd~~t~~~~~~~~~~~~~~~~kviG~t~lds~R~~~~lA 204 (289)
+++++++|.+++..|+++++++++.|++++|+++++++|||+|+||+++++.+++.+++|++||||+|.|||+|+++++|
T Consensus 80 ~~~~~~~R~dll~~N~~i~~~ii~~i~~~~~~~ivivvsNP~D~~t~~~~~~~~~~sg~p~~rvig~~~Lds~R~~~~ia 159 (312)
T PRK05086 80 ARKPGMDRSDLFNVNAGIVKNLVEKVAKTCPKACIGIITNPVNTTVAIAAEVLKKAGVYDKNKLFGVTTLDVIRSETFVA 159 (312)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccCchHHHHHHHHHHHHHhcCCCHHHEEeeecHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999888899999999999999999999999999
Q ss_pred HHcCCCCcceeeeEEcccCCCeeeeecccccCCCCCChhhHHHHHHHHHhhhHHHhhhcCCCCcchHHHHHHHHHHHHHH
Q 022947 205 EVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEAKTGAGSATLSMCRHMLLPSLPM 284 (289)
Q Consensus 205 ~~l~v~~~~V~~~V~G~hg~~~~vp~~S~~~v~~~~~~~~~~~i~~~v~~~g~~i~~~k~g~g~t~~s~A~a~~~~~~ai 284 (289)
++|+++|++|+++||||||++++||+||++ -+.+++++++++|.++|+++|++|+++|.|+|+|+||+|.++++++++|
T Consensus 160 ~~l~~~~~~v~~~v~GeHg~~s~~p~~S~~-~g~~l~~~~~~~i~~~v~~~g~~ii~~k~~~g~t~~~~a~a~~~~v~ai 238 (312)
T PRK05086 160 ELKGKQPGEVEVPVIGGHSGVTILPLLSQV-PGVSFTEQEVADLTKRIQNAGTEVVEAKAGGGSATLSMGQAAARFGLSL 238 (312)
T ss_pred HHhCCChhheEEEEEEecCCCceecccccc-CCccCCHHHHHHHHHHHHHHHHHHHhcccCCCCchhhHHHHHHHHHHHH
Confidence 999999999999999999877999999999 3335777779999999999999999988778999999999999999999
Q ss_pred hcC
Q 022947 285 LVS 287 (289)
Q Consensus 285 l~~ 287 (289)
++|
T Consensus 239 ~~~ 241 (312)
T PRK05086 239 VRA 241 (312)
T ss_pred Hhc
Confidence 965
No 12
>PRK05442 malate dehydrogenase; Provisional
Probab=100.00 E-value=1.7e-52 Score=391.20 Aligned_cols=233 Identities=23% Similarity=0.335 Sum_probs=207.5
Q ss_pred CCCCEEEEEcCCCccHHHHHHHHHhCCCcc-----EEEEEeCCC----chhHHhhhhcccC-C-ceEEEEecCCCHHhhh
Q 022947 44 SPGFKVAVLGAAGGIGQPLAMLMKINPLVS-----VLHLYDVVN----TPGVTADISHMDT-N-AVVRGFLGQQQLEDAL 112 (289)
Q Consensus 44 ~~~~KI~IIGaaG~VGs~la~~L~~~g~~~-----eI~LvD~~~----~~g~~~DL~~~~~-~-~~v~~~~~t~d~~eal 112 (289)
++++||+||||+|+||+++++.|...++++ ||+|+|+++ ++|+++||.|+.. . ..+... +++ ++++
T Consensus 2 ~~~~KV~IiGaaG~VG~~~a~~l~~~~~~~~~~~~el~LiDi~~~~~~~~g~a~Dl~~~~~~~~~~~~i~--~~~-y~~~ 78 (326)
T PRK05442 2 KAPVRVAVTGAAGQIGYSLLFRIASGDMLGKDQPVILQLLEIPPALKALEGVVMELDDCAFPLLAGVVIT--DDP-NVAF 78 (326)
T ss_pred CCCcEEEEECCCcHHHHHHHHHHHhhhhcCCCCccEEEEEecCCcccccceeehhhhhhhhhhcCCcEEe--cCh-HHHh
Confidence 457899999988999999999999999988 999999954 5899999999862 1 233332 345 4899
Q ss_pred CCCCEEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhC-CCcEEEEecCCCcccHHHHHHHHHHhC-CCCCCcEEE
Q 022947 113 TGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCC-PKAIVNLISNPVNSTVPIAAEVFKKVG-TYDPKRLLG 190 (289)
Q Consensus 113 ~~aDiVIitag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~-p~aiviv~tNPvd~~t~~~~~~~~~~~-~~~~~kviG 190 (289)
+|||+||++||.|+++|++|+|++..|++++++++++|++++ |+++++++|||+|+|||++ ++.+ +||++||||
T Consensus 79 ~daDiVVitaG~~~k~g~tR~dll~~Na~i~~~i~~~i~~~~~~~~iiivvsNPvDv~t~v~----~k~s~g~p~~rViG 154 (326)
T PRK05442 79 KDADVALLVGARPRGPGMERKDLLEANGAIFTAQGKALNEVAARDVKVLVVGNPANTNALIA----MKNAPDLPAENFTA 154 (326)
T ss_pred CCCCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEeCCchHHHHHHH----HHHcCCCCHHHEEe
Confidence 999999999999999999999999999999999999999988 8999999999999999875 5667 999999999
Q ss_pred eeeccHHHHHHHHHHHcCCCCcceeee-EEcccCCCeeeeecccccCCCC-----CChhh--HHHHHHHHHhhhHHHhhh
Q 022947 191 VTMLDVVRANTFVAEVLGLDPREVDVP-VVGGHAGVTILPLLSQVKPSCS-----LTPTE--IDYLTDRIQNGGTEVVEA 262 (289)
Q Consensus 191 ~t~lds~R~~~~lA~~l~v~~~~V~~~-V~G~hg~~~~vp~~S~~~v~~~-----~~~~~--~~~i~~~v~~~g~~i~~~ 262 (289)
+|.||++||+++||++|+++|++|+++ ||||||+ ++||+||++++++. +++++ +++|.++++++|++|++.
T Consensus 155 ~t~LDs~R~r~~la~~l~v~~~~V~~~vV~GeHG~-s~~~~~S~~~v~g~pl~~~~~~~~~~~~~i~~~v~~~g~~Ii~~ 233 (326)
T PRK05442 155 MTRLDHNRALSQLAAKAGVPVADIKKMTVWGNHSA-TQYPDFRHATIDGKPAAEVINDQAWLEDTFIPTVQKRGAAIIEA 233 (326)
T ss_pred eeHHHHHHHHHHHHHHhCcChHHeEEeEEEECCcC-ceeeccccCEECCEEHHHHccchhhHHHHHHHHHHhhHHHHHhC
Confidence 999999999999999999999999986 5999998 99999999999652 34433 679999999999999995
Q ss_pred cCCCCcchHHHHHH-HHHHHHHHhcC
Q 022947 263 KTGAGSATLSMCRH-MLLPSLPMLVS 287 (289)
Q Consensus 263 k~g~g~t~~s~A~a-~~~~~~ail~~ 287 (289)
| |+|+|++|.+ +++++++|++|
T Consensus 234 k---G~t~~~~a~~~~~~iv~ail~~ 256 (326)
T PRK05442 234 R---GASSAASAANAAIDHVRDWVLG 256 (326)
T ss_pred c---CCccHHHHHHHHHHHHHHHHhC
Confidence 4 7899999999 59999999998
No 13
>TIGR01771 L-LDH-NAD L-lactate dehydrogenase. This model represents the NAD-dependent L-lactate dehydrogenases from bacteria and eukaryotes. This enzyme function as as the final step in anaerobic glycolysis. Although lactate dehydrogenases have in some cases been mistaken for malate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of malate dehydrogenases.
Probab=100.00 E-value=1.6e-52 Score=387.62 Aligned_cols=227 Identities=24% Similarity=0.407 Sum_probs=204.4
Q ss_pred EEcCCCccHHHHHHHHHhCCCccEEEEEeCCC--chhHHhhhhcccCC--ceEEEEecCCCHHhhhCCCCEEEEcCCCCC
Q 022947 51 VLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTN--AVVRGFLGQQQLEDALTGMDIVIIPAGVPR 126 (289)
Q Consensus 51 IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~--~~g~~~DL~~~~~~--~~v~~~~~t~d~~eal~~aDiVIitag~~~ 126 (289)
|||+ |+||+++++.|+..++++||+|+|+++ ++|+++||.|+... ..+... .++| ++++|||+||+++|.|+
T Consensus 1 iIGa-G~VG~~~a~~l~~~~l~~el~L~Di~~~~~~g~a~Dl~~~~~~~~~~~~i~--~~~~-~~~~daDivVitag~~r 76 (299)
T TIGR01771 1 IIGA-GNVGSSTAFALLNQGIADEIVLIDINKDKAEGEAMDLQHAASFLPTPKKIR--SGDY-SDCKDADLVVITAGAPQ 76 (299)
T ss_pred CCCc-CHHHHHHHHHHHhcCCCCEEEEEeCCCChhhHHHHHHHHhhcccCCCeEEe--cCCH-HHHCCCCEEEECCCCCC
Confidence 6898 999999999999999999999999987 79999999998642 233432 3465 89999999999999999
Q ss_pred CCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecCCCcccHHHHHHHHHHhCCCCCCcEEEe-eeccHHHHHHHHHH
Q 022947 127 KPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVVRANTFVAE 205 (289)
Q Consensus 127 ~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~aiviv~tNPvd~~t~~~~~~~~~~~~~~~~kviG~-t~lds~R~~~~lA~ 205 (289)
++|++|.|++..|+++++++++.|++++|+++++++|||+|+||+++ ++.+++|++||||+ |.|||+|+++++|+
T Consensus 77 k~g~~R~dll~~N~~i~~~~~~~i~~~~p~~~vivvsNP~d~~t~~~----~~~sg~p~~~viG~gt~LDs~R~~~~la~ 152 (299)
T TIGR01771 77 KPGETRLELVGRNVRIMKSIVPEVVKSGFDGIFLVATNPVDILTYVA----WKLSGFPKNRVIGSGTVLDTARLRYLLAE 152 (299)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHH----HHHhCCCHHHEEeccchHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999764 66789999999999 79999999999999
Q ss_pred HcCCCCcceeeeEEcccCCCeeeeecccccCCCC-----CC------hhhHHHHHHHHHhhhHHHhhhcCCCCcchHHHH
Q 022947 206 VLGLDPREVDVPVVGGHAGVTILPLLSQVKPSCS-----LT------PTEIDYLTDRIQNGGTEVVEAKTGAGSATLSMC 274 (289)
Q Consensus 206 ~l~v~~~~V~~~V~G~hg~~~~vp~~S~~~v~~~-----~~------~~~~~~i~~~v~~~g~~i~~~k~g~g~t~~s~A 274 (289)
++++++++|+++||||||+ +|||+||++++++. ++ +.++++|.++++++|++|++.| |+|+|++|
T Consensus 153 ~l~v~~~~V~~~v~GeHG~-s~vp~~S~~~v~g~pl~~~~~~~~~~~~~~~~~i~~~v~~~g~~ii~~k---G~t~~~~a 228 (299)
T TIGR01771 153 KLGVDPQSVHAYIIGEHGD-SEVPVWSSATIGGVPLLDYLKAKGTETDLDLEEIEKEVRDAAYEIINRK---GATYYGIG 228 (299)
T ss_pred HhCcCcCeEEEEEEecCCC-ceeeceeeeEECCEEHHHHhhhcccccHHHHHHHHHHHHHHHHHHhhcC---CeeeHHHH
Confidence 9999999999999999998 99999999998641 11 2347899999999999999954 78999999
Q ss_pred HHHHHHHHHHhcCCC
Q 022947 275 RHMLLPSLPMLVSEA 289 (289)
Q Consensus 275 ~a~~~~~~ail~~~~ 289 (289)
.++++++++|++|+.
T Consensus 229 ~a~~~~i~ail~d~~ 243 (299)
T TIGR01771 229 MAVARIVEAILHDEN 243 (299)
T ss_pred HHHHHHHHHHHcCCC
Confidence 999999999999973
No 14
>PRK00066 ldh L-lactate dehydrogenase; Reviewed
Probab=100.00 E-value=2e-51 Score=382.94 Aligned_cols=232 Identities=25% Similarity=0.398 Sum_probs=210.0
Q ss_pred CCCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCC--chhHHhhhhcccCC-ceEEEEecCCCHHhhhCCCCEEEEc
Q 022947 45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTN-AVVRGFLGQQQLEDALTGMDIVIIP 121 (289)
Q Consensus 45 ~~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~--~~g~~~DL~~~~~~-~~v~~~~~t~d~~eal~~aDiVIit 121 (289)
..+||+|||+ |.||+++++.|+..++++||+|+|+++ ++|+++||.|+... .++... +++| ++++|||+||++
T Consensus 5 ~~~ki~iiGa-G~vG~~~a~~l~~~~~~~el~L~D~~~~~~~g~~~Dl~~~~~~~~~~~i~--~~~~-~~~~~adivIit 80 (315)
T PRK00066 5 QHNKVVLVGD-GAVGSSYAYALVNQGIADELVIIDINKEKAEGDAMDLSHAVPFTSPTKIY--AGDY-SDCKDADLVVIT 80 (315)
T ss_pred CCCEEEEECC-CHHHHHHHHHHHhcCCCCEEEEEeCCCchhHHHHHHHHhhccccCCeEEE--eCCH-HHhCCCCEEEEe
Confidence 4569999998 999999999999999999999999987 68999999998642 234443 3465 789999999999
Q ss_pred CCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecCCCcccHHHHHHHHHHhCCCCCCcEEEe-eeccHHHHH
Q 022947 122 AGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVVRAN 200 (289)
Q Consensus 122 ag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~aiviv~tNPvd~~t~~~~~~~~~~~~~~~~kviG~-t~lds~R~~ 200 (289)
+|.|+++|++|.|++..|+++++++++.+++++|+++++++|||+|+||+++ ++.+++|++||||+ |.||++|++
T Consensus 81 ag~~~k~g~~R~dll~~N~~i~~~i~~~i~~~~~~~~vivvsNP~d~~~~~~----~k~sg~p~~~viG~gt~LDs~R~~ 156 (315)
T PRK00066 81 AGAPQKPGETRLDLVEKNLKIFKSIVGEVMASGFDGIFLVASNPVDILTYAT----WKLSGFPKERVIGSGTSLDSARFR 156 (315)
T ss_pred cCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccCcHHHHHHHH----HHHhCCCHHHEeecCchHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999765 55679999999999 799999999
Q ss_pred HHHHHHcCCCCcceeeeEEcccCCCeeeeecccccCCC-----------CCChhhHHHHHHHHHhhhHHHhhhcCCCCcc
Q 022947 201 TFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSC-----------SLTPTEIDYLTDRIQNGGTEVVEAKTGAGSA 269 (289)
Q Consensus 201 ~~lA~~l~v~~~~V~~~V~G~hg~~~~vp~~S~~~v~~-----------~~~~~~~~~i~~~v~~~g~~i~~~k~g~g~t 269 (289)
+++|+++|+++++|+++||||||+ +++|+||++++++ .+++++++++.++++++|++|++.| |++
T Consensus 157 ~~la~~l~v~~~~V~~~viGeHG~-s~v~~~S~~~v~g~~l~~~~~~~~~~~~~~~~~i~~~v~~~g~~ii~~k---g~t 232 (315)
T PRK00066 157 YMLSEKLDVDPRSVHAYIIGEHGD-TEFPVWSHANVAGVPLEEYLEENEQYDEEDLDEIFENVRDAAYEIIEKK---GAT 232 (315)
T ss_pred HHHHHHhCCCcccEEEEEEecCCC-cceecceeceECCEEHHHHhhhccCcCHHHHHHHHHHHHHHHHHHHhcC---Cee
Confidence 999999999999999999999998 9999999999864 1344668899999999999999964 789
Q ss_pred hHHHHHHHHHHHHHHhcCC
Q 022947 270 TLSMCRHMLLPSLPMLVSE 288 (289)
Q Consensus 270 ~~s~A~a~~~~~~ail~~~ 288 (289)
+|++|.++++++++|++|+
T Consensus 233 ~~~~a~~~~~i~~ail~~~ 251 (315)
T PRK00066 233 YYGIAMALARITKAILNNE 251 (315)
T ss_pred hHHHHHHHHHHHHHHHcCC
Confidence 9999999999999999986
No 15
>KOG1494 consensus NAD-dependent malate dehydrogenase [Energy production and conversion]
Probab=100.00 E-value=1.9e-51 Score=366.23 Aligned_cols=266 Identities=67% Similarity=1.014 Sum_probs=249.9
Q ss_pred hhhHHHHHhhcCCCccccccccccccccccccCCCCCCCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchhHHh
Q 022947 9 NQRIARIAAHLHPPTLQIEGESSGLGRMDCRAKGGSPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTA 88 (289)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g~~~ 88 (289)
++++.|..+++-+ .+..|+.....+..||+|.||+|-+|+.+.++|+++++++++.|||+....|.+.
T Consensus 3 ~~~~~~~~~~~~~------------~~~~~~~~~~~~~~KVAvlGAaGGIGQPLSLLlK~np~Vs~LaLYDi~~~~GVaa 70 (345)
T KOG1494|consen 3 LKSLIRSSASLSS------------GPKRVFSSGSQRGLKVAVLGAAGGIGQPLSLLLKLNPLVSELALYDIANTPGVAA 70 (345)
T ss_pred hHHHHHhhhhhcc------------CCcccccccccCcceEEEEecCCccCccHHHHHhcCcccceeeeeecccCCcccc
Confidence 5677777777765 3455666666777899999999999999999999999999999999998999999
Q ss_pred hhhcccCCceEEEEecCCCHHhhhCCCCEEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecCCCcc
Q 022947 89 DISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNS 168 (289)
Q Consensus 89 DL~~~~~~~~v~~~~~t~d~~eal~~aDiVIitag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~aiviv~tNPvd~ 168 (289)
||+|.++...+..+.+.+.+++++++||+|||-||+||||||+|+|++..|+.++++++..+.++||++.+.++|||+|.
T Consensus 71 DlSHI~T~s~V~g~~g~~~L~~al~~advVvIPAGVPRKPGMTRDDLFn~NAgIv~~l~~aia~~cP~A~i~vIsNPVNs 150 (345)
T KOG1494|consen 71 DLSHINTNSSVVGFTGADGLENALKGADVVVIPAGVPRKPGMTRDDLFNINAGIVKTLAAAIAKCCPNALILVISNPVNS 150 (345)
T ss_pred cccccCCCCceeccCChhHHHHHhcCCCEEEecCCCCCCCCCcHHHhhhcchHHHHHHHHHHHhhCccceeEeecCcccc
Confidence 99999988889988877889999999999999999999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHhCCCCCCcEEEeeeccHHHHHHHHHHHcCCCC-cceeeeEEcccCCCeeeeecccccCCCCCChhhHHH
Q 022947 169 TVPIAAEVFKKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDP-REVDVPVVGGHAGVTILPLLSQVKPSCSLTPTEIDY 247 (289)
Q Consensus 169 ~t~~~~~~~~~~~~~~~~kviG~t~lds~R~~~~lA~~l~v~~-~~V~~~V~G~hg~~~~vp~~S~~~v~~~~~~~~~~~ 247 (289)
.++++.|++++.+.|+|+|+||+|.||..|.++++++.++++| ++++++|+|+|.+.|++|++|++.+...+++++++.
T Consensus 151 tVPIaaevlKk~G~ydpkklfGVTtLDvVRA~tFv~~~~~~~p~~~v~VPVIGGHaG~TIlPLlSQ~~p~~~~~~~~~~~ 230 (345)
T KOG1494|consen 151 TVPIAAEVLKKAGVYDPKKLFGVTTLDVVRANTFVAEVLNLDPAEDVDVPVIGGHAGITIIPLLSQCKPPFRFTDDEIEA 230 (345)
T ss_pred cchHHHHHHHHcCCCCccceeceehhhhhhHHHHHHHHhCCCchhcCCcceecCcCCceEeeecccCCCcccCCHHHHHH
Confidence 9999999999999999999999999999999999999999999 569999999999889999999999988899999999
Q ss_pred HHHHHHhhhHHHhhhcCCCCcchHHHHHHHHHHHHHHhc
Q 022947 248 LTDRIQNGGTEVVEAKTGAGSATLSMCRHMLLPSLPMLV 286 (289)
Q Consensus 248 i~~~v~~~g~~i~~~k~g~g~t~~s~A~a~~~~~~ail~ 286 (289)
++.+++.+|.||++.|.|+||+.+|+|+|.++|++++++
T Consensus 231 Lt~RiQ~gGtEVV~AKaGaGSATLSMAyAga~fa~s~lr 269 (345)
T KOG1494|consen 231 LTHRIQNGGTEVVKAKAGAGSATLSMAYAGAKFADSLLR 269 (345)
T ss_pred HHHHHHhCCceEEEeccCCCchhhhHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999875
No 16
>PLN00112 malate dehydrogenase (NADP); Provisional
Probab=100.00 E-value=1e-50 Score=390.20 Aligned_cols=238 Identities=23% Similarity=0.259 Sum_probs=209.3
Q ss_pred cCCCCCCCEEEEEcCCCccHHHHHHHHHhC-------CCccEEEEEeCCC--chhHHhhhhcccC--CceEEEEecCCCH
Q 022947 40 AKGGSPGFKVAVLGAAGGIGQPLAMLMKIN-------PLVSVLHLYDVVN--TPGVTADISHMDT--NAVVRGFLGQQQL 108 (289)
Q Consensus 40 ~~~~~~~~KI~IIGaaG~VGs~la~~L~~~-------g~~~eI~LvD~~~--~~g~~~DL~~~~~--~~~v~~~~~t~d~ 108 (289)
++.-+++.||+|||++|+||+++++.|+.+ +++.||+|+|+++ ++|+++||.|+.. ...+... +++|
T Consensus 94 ~~~~~~~~KV~IIGAaG~VG~~~A~~L~~~~v~g~~~~i~~eLvliD~~~~~a~G~amDL~daa~~~~~~v~i~--~~~y 171 (444)
T PLN00112 94 TKSWKKLINVAVSGAAGMISNHLLFKLASGEVFGPDQPIALKLLGSERSKQALEGVAMELEDSLYPLLREVSIG--IDPY 171 (444)
T ss_pred hhcCCCCeEEEEECCCcHHHHHHHHHHHhcccccCCCCcccEEEEEcCCcchhHHHHHHHHHhhhhhcCceEEe--cCCH
Confidence 444566889999999999999999999998 7777999999988 7999999999862 2234322 3455
Q ss_pred HhhhCCCCEEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHH-hCCCcEEEEecCCCcccHHHHHHHHHHhCCCCCCc
Q 022947 109 EDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAK-CCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKR 187 (289)
Q Consensus 109 ~eal~~aDiVIitag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~-~~p~aiviv~tNPvd~~t~~~~~~~~~~~~~~~~k 187 (289)
++++|||+||+++|.|+++|++|.|++..|+++++++++.|++ ++|++++|++|||+|+|||++ ++.++++|+|
T Consensus 172 -e~~kdaDiVVitAG~prkpG~tR~dLl~~N~~I~k~i~~~I~~~a~p~~ivIVVsNPvDv~t~v~----~k~sg~~~~r 246 (444)
T PLN00112 172 -EVFQDAEWALLIGAKPRGPGMERADLLDINGQIFAEQGKALNEVASRNVKVIVVGNPCNTNALIC----LKNAPNIPAK 246 (444)
T ss_pred -HHhCcCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEcCCcHHHHHHHH----HHHcCCCCcc
Confidence 8999999999999999999999999999999999999999999 589999999999999999765 6678999999
Q ss_pred EEEe-eeccHHHHHHHHHHHcCCCCcce-eeeEEcccCCCeeeeecccccCCCC-----CChhh--HHHHHHHHHhhhHH
Q 022947 188 LLGV-TMLDVVRANTFVAEVLGLDPREV-DVPVVGGHAGVTILPLLSQVKPSCS-----LTPTE--IDYLTDRIQNGGTE 258 (289)
Q Consensus 188 viG~-t~lds~R~~~~lA~~l~v~~~~V-~~~V~G~hg~~~~vp~~S~~~v~~~-----~~~~~--~~~i~~~v~~~g~~ 258 (289)
+||+ |.||++||+++||+++++++++| +++||||||+ +|||+||++++++. +++.+ +++|.++++++|++
T Consensus 247 ViGtgT~LDsaR~r~~LA~~l~V~~~~V~~~~V~GeHGd-sqvp~wS~a~V~G~pl~e~i~~~~~~~~ei~~~v~~~g~~ 325 (444)
T PLN00112 247 NFHALTRLDENRAKCQLALKAGVFYDKVSNVTIWGNHST-TQVPDFLNAKINGLPVKEVITDHKWLEEEFTPKVQKRGGV 325 (444)
T ss_pred eEEeeccHHHHHHHHHHHHHhCcCHHHcccceEEecCCC-ceeeccceeEECCccHHHhhccccchHHHHHHHHHHHHHH
Confidence 9999 89999999999999999999999 5699999998 99999999999651 33333 68999999999999
Q ss_pred HhhhcCCCCcchH-HHHHHHHHHHHHHh--cCC
Q 022947 259 VVEAKTGAGSATL-SMCRHMLLPSLPML--VSE 288 (289)
Q Consensus 259 i~~~k~g~g~t~~-s~A~a~~~~~~ail--~~~ 288 (289)
|++.| |+++| ++|.++++++++|+ +|+
T Consensus 326 Ii~~k---G~t~~~s~a~ai~~~I~ail~~~d~ 355 (444)
T PLN00112 326 LIKKW---GRSSAASTAVSIADAIKSLVTPTPE 355 (444)
T ss_pred HHhcc---CchhHHHHHHHHHHHHHHHHcCCCC
Confidence 99965 55555 99999999999999 876
No 17
>cd00704 MDH Malate dehydrogenase. Malate dehydrogenase (MDH) is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. MDHs belong to the NAD-dependent, lactate dehydrogenase (LDH)-like, 2-hydroxycarboxylate dehydrogenase family, which also includes the GH4 family of glycoside hydrolases. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=100.00 E-value=6.8e-51 Score=380.19 Aligned_cols=231 Identities=30% Similarity=0.418 Sum_probs=203.6
Q ss_pred EEEEEcCCCccHHHHHHHHHhCCCcc-----EEEEEeCCC----chhHHhhhhcccC--CceEEEEecCCCHHhhhCCCC
Q 022947 48 KVAVLGAAGGIGQPLAMLMKINPLVS-----VLHLYDVVN----TPGVTADISHMDT--NAVVRGFLGQQQLEDALTGMD 116 (289)
Q Consensus 48 KI~IIGaaG~VGs~la~~L~~~g~~~-----eI~LvD~~~----~~g~~~DL~~~~~--~~~v~~~~~t~d~~eal~~aD 116 (289)
||+||||+|+||+++++.|+.+++++ +|+|+|+++ ++|+++||.|... ....... +.+ +++++|||
T Consensus 2 KV~IiGAaG~VG~~~a~~L~~~~~~~~~~~~~l~L~Di~~~~~~~~g~~~Dl~d~~~~~~~~~~i~--~~~-~~~~~~aD 78 (323)
T cd00704 2 HVLITGAAGQIGYNLLFLIASGELFGDDQPVILHLLDIPPAMKALEGVVMELQDCAFPLLKGVVIT--TDP-EEAFKDVD 78 (323)
T ss_pred EEEEECCCcHHHHHHHHHHHhCCccCCCCceEEEEEecCCccCccceeeeehhhhcccccCCcEEe--cCh-HHHhCCCC
Confidence 89999999999999999999999888 499999986 6889999999852 2223321 234 58999999
Q ss_pred EEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhC-CCcEEEEecCCCcccHHHHHHHHHHhCC-CCCCcEEEeeec
Q 022947 117 IVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCC-PKAIVNLISNPVNSTVPIAAEVFKKVGT-YDPKRLLGVTML 194 (289)
Q Consensus 117 iVIitag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~-p~aiviv~tNPvd~~t~~~~~~~~~~~~-~~~~kviG~t~l 194 (289)
+||++||.|+++|++|+|++..|+++++++++.|++++ |+++++++|||+|+|||++ ++.+| +|++||||+|.|
T Consensus 79 iVVitAG~~~~~g~tR~dll~~N~~i~~~i~~~i~~~~~~~~iiivvsNPvD~~t~~~----~k~sg~~p~~~vig~t~L 154 (323)
T cd00704 79 VAILVGAFPRKPGMERADLLRKNAKIFKEQGEALNKVAKPTVKVLVVGNPANTNALIA----LKNAPNLPPKNFTALTRL 154 (323)
T ss_pred EEEEeCCCCCCcCCcHHHHHHHhHHHHHHHHHHHHHhCCCCeEEEEeCCcHHHHHHHH----HHHcCCCCHHHEEEeeHH
Confidence 99999999999999999999999999999999999996 9999999999999999764 66778 599999999999
Q ss_pred cHHHHHHHHHHHcCCCCccee-eeEEcccCCCeeeeecccccCCCC---------CChh-hHHHHHHHHHhhhHHHhhhc
Q 022947 195 DVVRANTFVAEVLGLDPREVD-VPVVGGHAGVTILPLLSQVKPSCS---------LTPT-EIDYLTDRIQNGGTEVVEAK 263 (289)
Q Consensus 195 ds~R~~~~lA~~l~v~~~~V~-~~V~G~hg~~~~vp~~S~~~v~~~---------~~~~-~~~~i~~~v~~~g~~i~~~k 263 (289)
||+|||++||++++++|++|+ ++||||||+ +++|+||++++++. ++++ ..++|.++++++|++|++.|
T Consensus 155 Ds~R~r~~la~~l~v~~~~V~~~~V~GeHG~-s~v~~~S~~~v~g~~~~~~~~~~~~~~~~~~~i~~~v~~~~~~Ii~~k 233 (323)
T cd00704 155 DHNRAKAQVARKLGVRVSDVKNVIIWGNHSN-TQVPDLSNAVVYGPGGTEWVLDLLDEEWLNDEFVKTVQKRGAAIIKKR 233 (323)
T ss_pred HHHHHHHHHHHHhCcCHHHceeeeEEecccC-ceeeccccceecCccHHHhcccccChHHHHHHHHHHHHhhHHHHHhcc
Confidence 999999999999999999995 689999999 99999999998642 2222 25799999999999999965
Q ss_pred CCCCcchHH-HHHHHHHHHHHHhcCCC
Q 022947 264 TGAGSATLS-MCRHMLLPSLPMLVSEA 289 (289)
Q Consensus 264 ~g~g~t~~s-~A~a~~~~~~ail~~~~ 289 (289)
|+|+|+ +|.++++++++|++|+.
T Consensus 234 ---g~t~~~~~a~a~~~iv~ail~~~~ 257 (323)
T cd00704 234 ---GASSAASAAKAIADHVKDWLFGTP 257 (323)
T ss_pred ---CcchhHHHHHHHHHHHHHHHhCCC
Confidence 678886 69999999999999974
No 18
>TIGR01757 Malate-DH_plant malate dehydrogenase, NADP-dependent. This model represents the NADP-dependent malate dehydrogenase found in plants, mosses and green algae and localized to the chloroplast. Malate dehydrogenase converts oxaloacetate into malate, a critical step in the C4 cycle which allows circumvention of the effects of photorespiration. Malate is subsequenctly transported from the chloroplast to the cytoplasm (and then to the bundle sheath cells in C4 plants). The plant and moss enzymes are light regulated via cysteine disulfide bonds. The enzyme from Sorghum has been crystallized.
Probab=100.00 E-value=2.1e-50 Score=382.84 Aligned_cols=238 Identities=24% Similarity=0.283 Sum_probs=206.2
Q ss_pred cCCCCCCCEEEEEcCCCccHHHHHHHHHhCCCcc-----EEEEE--eCCC--chhHHhhhhcccC--CceEEEEecCCCH
Q 022947 40 AKGGSPGFKVAVLGAAGGIGQPLAMLMKINPLVS-----VLHLY--DVVN--TPGVTADISHMDT--NAVVRGFLGQQQL 108 (289)
Q Consensus 40 ~~~~~~~~KI~IIGaaG~VGs~la~~L~~~g~~~-----eI~Lv--D~~~--~~g~~~DL~~~~~--~~~v~~~~~t~d~ 108 (289)
++.-+++.||+||||+|+||+++|+.|+.+++++ +|+|+ |+++ ++|+++||.|+.. ...+... +++|
T Consensus 38 ~~~~~~p~KV~IIGAaG~VG~~~A~~l~~~~l~~~~~ei~L~L~diD~~~~~a~g~a~DL~d~a~~~~~~v~i~--~~~y 115 (387)
T TIGR01757 38 TKSWKKTVNVAVSGAAGMISNHLLFMLASGEVFGQDQPIALKLLGSERSKEALEGVAMELEDSLYPLLREVSIG--IDPY 115 (387)
T ss_pred HhcCCCCeEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEeccCccchhhhHHHHHHHHhhhhhcCceEEe--cCCH
Confidence 3334557899999999999999999999999988 56677 6665 6899999999862 2233322 3454
Q ss_pred HhhhCCCCEEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhC-CCcEEEEecCCCcccHHHHHHHHHHhCCCCCCc
Q 022947 109 EDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCC-PKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKR 187 (289)
Q Consensus 109 ~eal~~aDiVIitag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~-p~aiviv~tNPvd~~t~~~~~~~~~~~~~~~~k 187 (289)
++++|||+||++||.|+++|++|+|++..|+++++++++.|++++ |++++|++|||+|+|||++ ++.+++||+|
T Consensus 116 -~~~kdaDIVVitAG~prkpg~tR~dll~~N~~I~k~i~~~I~~~a~~~~iviVVsNPvDv~t~v~----~k~sg~~~~r 190 (387)
T TIGR01757 116 -EVFEDADWALLIGAKPRGPGMERADLLDINGQIFADQGKALNAVASKNCKVLVVGNPCNTNALIA----MKNAPNIPRK 190 (387)
T ss_pred -HHhCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEcCCcHHHHHHHH----HHHcCCCccc
Confidence 899999999999999999999999999999999999999999987 9999999999999999765 5677999999
Q ss_pred EEEe-eeccHHHHHHHHHHHcCCCCccee-eeEEcccCCCeeeeecccccCCC-C----CChhh--HHHHHHHHHhhhHH
Q 022947 188 LLGV-TMLDVVRANTFVAEVLGLDPREVD-VPVVGGHAGVTILPLLSQVKPSC-S----LTPTE--IDYLTDRIQNGGTE 258 (289)
Q Consensus 188 viG~-t~lds~R~~~~lA~~l~v~~~~V~-~~V~G~hg~~~~vp~~S~~~v~~-~----~~~~~--~~~i~~~v~~~g~~ 258 (289)
+||+ |.|||+||+++||++|++++++|+ ++||||||+ +|||+||++++++ + +++.+ +++|.++|+++|++
T Consensus 191 viG~gT~LDsaR~r~~LA~~l~v~~~~V~~~~V~GeHGd-s~vp~~S~a~V~G~pl~~~~~~~~~~~~ei~~~v~~~g~e 269 (387)
T TIGR01757 191 NFHALTRLDENRAKCQLALKSGKFYTSVSNVTIWGNHST-TQVPDFVNAKIGGRPAKEVIKDTKWLEEEFTPTVQKRGGA 269 (387)
T ss_pred EEEecchhHHHHHHHHHHHHHCcChhHcceeEEEecCCC-cEEecceeeEECCEEhHHhcccccchHHHHHHHHHHHHHH
Confidence 9999 899999999999999999999995 999999998 9999999999864 1 22323 68999999999999
Q ss_pred HhhhcCCCCcchH-HHHHHHHHHHHHHh--cCC
Q 022947 259 VVEAKTGAGSATL-SMCRHMLLPSLPML--VSE 288 (289)
Q Consensus 259 i~~~k~g~g~t~~-s~A~a~~~~~~ail--~~~ 288 (289)
|++.| |+++| ++|.++++++++|+ +|+
T Consensus 270 Ii~~K---G~t~~~s~a~ai~~~i~ai~~g~d~ 299 (387)
T TIGR01757 270 LIKKW---GRSSAASTAVSIADAIKSLVVPTPE 299 (387)
T ss_pred HHhcc---CchhHHHHHHHHHHHHHHHhcCCCC
Confidence 99965 44555 99999999999999 876
No 19
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=100.00 E-value=2.9e-50 Score=373.92 Aligned_cols=231 Identities=28% Similarity=0.409 Sum_probs=206.7
Q ss_pred CEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCC--chhHHhhhhcccC--CceEEEEecCCCHHhhhCCCCEEEEcC
Q 022947 47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDT--NAVVRGFLGQQQLEDALTGMDIVIIPA 122 (289)
Q Consensus 47 ~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~--~~g~~~DL~~~~~--~~~v~~~~~t~d~~eal~~aDiVIita 122 (289)
+||+|||+ |.||+++++.|+..++..+|+|+|+++ +++.++||.|... ....... ..++ +++++||+||+++
T Consensus 1 ~kI~IIGa-G~vG~~~a~~l~~~g~~~ei~l~D~~~~~~~~~a~dL~~~~~~~~~~~~i~--~~~~-~~l~~aDIVIita 76 (306)
T cd05291 1 RKVVIIGA-GHVGSSFAYSLVNQGIADELVLIDINEEKAEGEALDLEDALAFLPSPVKIK--AGDY-SDCKDADIVVITA 76 (306)
T ss_pred CEEEEECC-CHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHhHhhHHHHhhccCCCeEEE--cCCH-HHhCCCCEEEEcc
Confidence 38999998 999999999999999888999999987 6788999998753 1223332 2455 6799999999999
Q ss_pred CCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecCCCcccHHHHHHHHHHhCCCCCCcEEEe-eeccHHHHHH
Q 022947 123 GVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVVRANT 201 (289)
Q Consensus 123 g~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~aiviv~tNPvd~~t~~~~~~~~~~~~~~~~kviG~-t~lds~R~~~ 201 (289)
|.|+++|++|.|++.+|+++++++++.|++++|+++++++|||+|+||+++ ++.++||++||||+ |.||++|+++
T Consensus 77 g~~~~~g~~R~dll~~N~~i~~~~~~~i~~~~~~~~vivvsNP~d~~~~~~----~~~~g~p~~~v~g~gt~LDs~R~~~ 152 (306)
T cd05291 77 GAPQKPGETRLDLLEKNAKIMKSIVPKIKASGFDGIFLVASNPVDVITYVV----QKLSGLPKNRVIGTGTSLDTARLRR 152 (306)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEecChHHHHHHHH----HHHhCcCHHHEeeccchHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999764 56789999999999 7999999999
Q ss_pred HHHHHcCCCCcceeeeEEcccCCCeeeeecccccCCC----------CCChhhHHHHHHHHHhhhHHHhhhcCCCCcchH
Q 022947 202 FVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSC----------SLTPTEIDYLTDRIQNGGTEVVEAKTGAGSATL 271 (289)
Q Consensus 202 ~lA~~l~v~~~~V~~~V~G~hg~~~~vp~~S~~~v~~----------~~~~~~~~~i~~~v~~~g~~i~~~k~g~g~t~~ 271 (289)
+||+++++++++|+++||||||+ +++|+||++++++ .+.+++++++.++++++|++|++.| |+|+|
T Consensus 153 ~la~~l~v~~~~v~~~V~G~Hg~-s~~~~~S~~~v~g~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~ii~~k---g~t~~ 228 (306)
T cd05291 153 ALAEKLNVDPRSVHAYVLGEHGD-SQFVAWSTVTVGGKPLLDLLKEGKLSELDLDEIEEDVRKAGYEIINGK---GATYY 228 (306)
T ss_pred HHHHHHCCCcccceEEEEecCCC-ceeecceeeEEcCEEHHHHhhccccChHHHHHHHHHHHHHHHHHHHcc---CccHH
Confidence 99999999999999999999998 9999999999864 1234568899999999999999954 78999
Q ss_pred HHHHHHHHHHHHHhcCCC
Q 022947 272 SMCRHMLLPSLPMLVSEA 289 (289)
Q Consensus 272 s~A~a~~~~~~ail~~~~ 289 (289)
++|.|+++++++|++|+.
T Consensus 229 ~~a~a~~~~~~ail~~~~ 246 (306)
T cd05291 229 GIATALARIVKAILNDEN 246 (306)
T ss_pred HHHHHHHHHHHHHHcCCC
Confidence 999999999999999863
No 20
>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent. The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.
Probab=100.00 E-value=3.6e-50 Score=373.06 Aligned_cols=231 Identities=31% Similarity=0.515 Sum_probs=207.7
Q ss_pred CEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCC--chhHHhhhhcccC----CceEEEEecCCCHHhhhCCCCEEEE
Q 022947 47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDT----NAVVRGFLGQQQLEDALTGMDIVII 120 (289)
Q Consensus 47 ~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~--~~g~~~DL~~~~~----~~~v~~~~~t~d~~eal~~aDiVIi 120 (289)
|||+|||+ |+||+.+|+.++..|+. +|+|+|+++ ..++++|+.|... ..+++ .++|+ +++++||+||+
T Consensus 2 ~KV~VIGa-G~vG~~iA~~la~~g~~-~VvlvDi~~~l~~g~a~d~~~~~~~~~~~~~i~---~t~d~-~~~~~aDiVIi 75 (305)
T TIGR01763 2 KKISVIGA-GFVGATTAFRLAEKELA-DLVLLDVVEGIPQGKALDMYEASPVGGFDTKVT---GTNNY-ADTANSDIVVI 75 (305)
T ss_pred CEEEEECc-CHHHHHHHHHHHHcCCC-eEEEEeCCCChhHHHHHhhhhhhhccCCCcEEE---ecCCH-HHhCCCCEEEE
Confidence 69999998 99999999999999887 899999987 5677888887642 12333 35677 55999999999
Q ss_pred cCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecCCCcccHHHHHHHHHHhCCCCCCcEEEee-eccHHHH
Q 022947 121 PAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGVT-MLDVVRA 199 (289)
Q Consensus 121 tag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~aiviv~tNPvd~~t~~~~~~~~~~~~~~~~kviG~t-~lds~R~ 199 (289)
|+|.|+++|++|+|++..|.+++++++++|.+++|++++|++|||+|+||+++ ++.+|+|++||||+| .|||+|+
T Consensus 76 tag~p~~~~~sR~~l~~~N~~iv~~i~~~I~~~~p~~~iIv~tNP~di~t~~~----~~~sg~~~~rviG~g~~lds~R~ 151 (305)
T TIGR01763 76 TAGLPRKPGMSREDLLSMNAGIVREVTGRIMEHSPNPIIVVVSNPLDAMTYVA----WQKSGFPKERVIGQAGVLDSARF 151 (305)
T ss_pred cCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHHH----HHHHCcCHHHEEEeccchHHHHH
Confidence 99999999999999999999999999999999999999999999999999765 667899999999995 8999999
Q ss_pred HHHHHHHcCCCCcceeeeEEcccCCCeeeeecccccCCCC-----CChhhHHHHHHHHHhhhHHHhhhcCCCCcchHHHH
Q 022947 200 NTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSCS-----LTPTEIDYLTDRIQNGGTEVVEAKTGAGSATLSMC 274 (289)
Q Consensus 200 ~~~lA~~l~v~~~~V~~~V~G~hg~~~~vp~~S~~~v~~~-----~~~~~~~~i~~~v~~~g~~i~~~k~g~g~t~~s~A 274 (289)
+++||++|++++++|+++||||||+ ++||+||++++++. ++++++++|.++++++|++|+++| |||+|+|++|
T Consensus 152 ~~~la~~l~v~~~~v~~~v~GeHg~-s~~~~wS~~~i~g~~~~~~~~~~~~~~l~~~v~~~g~~ii~~~-~kg~t~~~~a 229 (305)
T TIGR01763 152 RTFIAMELGVSVQDVTACVLGGHGD-AMVPLVRYSTVAGIPVADLISAERIAEIVERTRKGGGEIVNLL-KQGSAYYAPA 229 (305)
T ss_pred HHHHHHHhCcCHHHeeeeEEecCCC-cEEeeeeeeEECCEEHHHhcCHHHHHHHHHHHHHHHHHHHHhc-CCCChHHHHH
Confidence 9999999999999999999999998 99999999998651 445558999999999999999987 7899999999
Q ss_pred HHHHHHHHHHhcCCC
Q 022947 275 RHMLLPSLPMLVSEA 289 (289)
Q Consensus 275 ~a~~~~~~ail~~~~ 289 (289)
.++++|+++|++|+.
T Consensus 230 ~~~~~i~~ai~~~~~ 244 (305)
T TIGR01763 230 ASVVEMVEAILKDRK 244 (305)
T ss_pred HHHHHHHHHHhCCCC
Confidence 999999999999973
No 21
>cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=100.00 E-value=3.6e-50 Score=375.21 Aligned_cols=233 Identities=22% Similarity=0.330 Sum_probs=207.1
Q ss_pred CCCEEEEEcCCCccHHHHHHHHHhCCCcc-----EEEEEeCCC----chhHHhhhhcccC--CceEEEEecCCCHHhhhC
Q 022947 45 PGFKVAVLGAAGGIGQPLAMLMKINPLVS-----VLHLYDVVN----TPGVTADISHMDT--NAVVRGFLGQQQLEDALT 113 (289)
Q Consensus 45 ~~~KI~IIGaaG~VGs~la~~L~~~g~~~-----eI~LvD~~~----~~g~~~DL~~~~~--~~~v~~~~~t~d~~eal~ 113 (289)
+++||+||||+|+||+++++.|+..++++ ||+|+|+++ ++|+++||.|+.. ...+... +++ +++++
T Consensus 1 ~p~KV~IiGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~~~~~~~~i~--~~~-~~~~~ 77 (322)
T cd01338 1 KPVRVAVTGAAGQIGYSLLFRIASGEMFGPDQPVILQLLELPQALKALEGVAMELEDCAFPLLAEIVIT--DDP-NVAFK 77 (322)
T ss_pred CCeEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEEecCCcccccceeehhhhhccccccCceEEe--cCc-HHHhC
Confidence 46799999988999999999999999999 999999954 6899999999862 1234432 345 48999
Q ss_pred CCCEEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhC-CCcEEEEecCCCcccHHHHHHHHHHhC-CCCCCcEEEe
Q 022947 114 GMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCC-PKAIVNLISNPVNSTVPIAAEVFKKVG-TYDPKRLLGV 191 (289)
Q Consensus 114 ~aDiVIitag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~-p~aiviv~tNPvd~~t~~~~~~~~~~~-~~~~~kviG~ 191 (289)
|||+||+|||.|+++|++|+|++..|++++++++++|++++ |++++|++|||+|+|||++ ++.+ ++|++||||+
T Consensus 78 daDivvitaG~~~k~g~tR~dll~~N~~i~~~i~~~i~~~~~~~~iiivvsNPvD~~t~~~----~k~sg~~p~~~ViG~ 153 (322)
T cd01338 78 DADWALLVGAKPRGPGMERADLLKANGKIFTAQGKALNDVASRDVKVLVVGNPCNTNALIA----MKNAPDIPPDNFTAM 153 (322)
T ss_pred CCCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEecCcHHHHHHHH----HHHcCCCChHheEEe
Confidence 99999999999999999999999999999999999999999 5999999999999999875 5567 5999999999
Q ss_pred eeccHHHHHHHHHHHcCCCCcceee-eEEcccCCCeeeeecccccCCC-C----CChhh--HHHHHHHHHhhhHHHhhhc
Q 022947 192 TMLDVVRANTFVAEVLGLDPREVDV-PVVGGHAGVTILPLLSQVKPSC-S----LTPTE--IDYLTDRIQNGGTEVVEAK 263 (289)
Q Consensus 192 t~lds~R~~~~lA~~l~v~~~~V~~-~V~G~hg~~~~vp~~S~~~v~~-~----~~~~~--~~~i~~~v~~~g~~i~~~k 263 (289)
|.||++||++++|+++|+++++|++ +||||||+ +++|+||++++.+ + +++.+ +++|.++++++|++|++.|
T Consensus 154 t~LDs~Rl~~~la~~lgv~~~~v~~~~V~GeHG~-s~vp~~S~~~v~g~pl~~~~~~~~~~~~~i~~~v~~~g~~Ii~~k 232 (322)
T cd01338 154 TRLDHNRAKSQLAKKAGVPVTDVKNMVIWGNHSP-TQYPDFTNATIGGKPAAEVINDRAWLEDEFIPTVQKRGAAIIKAR 232 (322)
T ss_pred hHHHHHHHHHHHHHHhCcChhHeEEEEEEeCCcc-cEEEehhhcEECCEeHHHhcChHhhHHHHHHHHHHhhHHHHHhCc
Confidence 9999999999999999999999998 56999998 9999999998864 1 34433 6799999999999999964
Q ss_pred CCCCcchHHHH-HHHHHHHHHHhcCC
Q 022947 264 TGAGSATLSMC-RHMLLPSLPMLVSE 288 (289)
Q Consensus 264 ~g~g~t~~s~A-~a~~~~~~ail~~~ 288 (289)
|+++|++| .++++++++|++|+
T Consensus 233 ---G~t~~~~~a~a~~~iv~ail~~~ 255 (322)
T cd01338 233 ---GASSAASAANAAIDHMRDWVLGT 255 (322)
T ss_pred ---CCccHHHHHHHHHHHHHHHhcCC
Confidence 78999999 59999999999997
No 22
>PTZ00082 L-lactate dehydrogenase; Provisional
Probab=100.00 E-value=1.6e-49 Score=370.88 Aligned_cols=235 Identities=32% Similarity=0.590 Sum_probs=209.9
Q ss_pred CCCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCC--chhHHhhhhcccC--CceEEEEecCCCHHhhhCCCCEEEE
Q 022947 45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDT--NAVVRGFLGQQQLEDALTGMDIVII 120 (289)
Q Consensus 45 ~~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~--~~g~~~DL~~~~~--~~~v~~~~~t~d~~eal~~aDiVIi 120 (289)
+.+||+|||| |.||+++++.++..++ .+|+|+|+++ +.++++|+.|... ....+.. .++|+ ++++|||+||+
T Consensus 5 ~~~KI~IIGa-G~vG~~ia~~la~~gl-~~i~LvDi~~~~~~~~~ld~~~~~~~~~~~~~I~-~~~d~-~~l~~aDiVI~ 80 (321)
T PTZ00082 5 KRRKISLIGS-GNIGGVMAYLIVLKNL-GDVVLFDIVKNIPQGKALDISHSNVIAGSNSKVI-GTNNY-EDIAGSDVVIV 80 (321)
T ss_pred CCCEEEEECC-CHHHHHHHHHHHhCCC-CeEEEEeCCCchhhHHHHHHHhhhhccCCCeEEE-ECCCH-HHhCCCCEEEE
Confidence 3469999998 9999999999999997 4699999988 5778999999742 1222322 34677 78999999999
Q ss_pred cCCCCCCCCC-----chhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecCCCcccHHHHHHHHHHhCCCCCCcEEEee-ec
Q 022947 121 PAGVPRKPGM-----TRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGVT-ML 194 (289)
Q Consensus 121 tag~~~~~g~-----~r~d~~~~N~~i~~~i~~~i~~~~p~aiviv~tNPvd~~t~~~~~~~~~~~~~~~~kviG~t-~l 194 (289)
++|.++++|+ +|.+++..|+++++++++.|+++||++++|++|||+|++|+.+ ++.+++|++||||+| .|
T Consensus 81 tag~~~~~~~~~~~~~r~~~l~~n~~i~~~i~~~i~~~~p~a~~iv~sNP~di~t~~~----~~~sg~p~~rviGlgt~l 156 (321)
T PTZ00082 81 TAGLTKRPGKSDKEWNRDDLLPLNAKIMDEVAEGIKKYCPNAFVIVITNPLDVMVKLL----QEHSGLPKNKVCGMAGVL 156 (321)
T ss_pred CCCCCCCCCCCcCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHHH----HHhcCCChhhEEEecCcc
Confidence 9999999999 9999999999999999999999999999999999999999654 677899999999996 89
Q ss_pred cHHHHHHHHHHHcCCCCcceeeeEEcccCCCeeeeecccccCCC----------CCChhhHHHHHHHHHhhhHHHhhhcC
Q 022947 195 DVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSC----------SLTPTEIDYLTDRIQNGGTEVVEAKT 264 (289)
Q Consensus 195 ds~R~~~~lA~~l~v~~~~V~~~V~G~hg~~~~vp~~S~~~v~~----------~~~~~~~~~i~~~v~~~g~~i~~~k~ 264 (289)
|++|++++||+++++++++|+++|+||||+ ++||+||++++++ .++++++++|.++++++|++|+++|
T Consensus 157 ds~R~~~~la~~l~v~~~~v~~~viGeHg~-s~v~~~S~~~i~g~~~~~~~~~~~~~~~~~~~i~~~~~~~g~~i~~~~- 234 (321)
T PTZ00082 157 DSSRLRTYIAEKLGVNPRDVHASVIGAHGD-KMVPLPRYVTVGGIPLSEFIKKGLITQEEIDEIVERTRNTGKEIVDLL- 234 (321)
T ss_pred cHHHHHHHHHHHhCCCcccceeeEEecCCC-ceEecceeeEECCEEHHHhhhcccCCHHHHHHHHHHHHHHHHHHHhhc-
Confidence 999999999999999999999999999998 9999999999854 1455668999999999999999987
Q ss_pred CCCcchHHHHHHHHHHHHHHhcCCC
Q 022947 265 GAGSATLSMCRHMLLPSLPMLVSEA 289 (289)
Q Consensus 265 g~g~t~~s~A~a~~~~~~ail~~~~ 289 (289)
|||+|+||+|.++++++++|++|+.
T Consensus 235 gkg~t~~~ia~a~~~i~~ail~d~~ 259 (321)
T PTZ00082 235 GTGSAYFAPAAAAIEMAEAYLKDKK 259 (321)
T ss_pred CCCccHHHHHHHHHHHHHHHHcCCC
Confidence 7899999999999999999999974
No 23
>PTZ00117 malate dehydrogenase; Provisional
Probab=100.00 E-value=1.9e-49 Score=370.41 Aligned_cols=235 Identities=31% Similarity=0.517 Sum_probs=210.0
Q ss_pred CCCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCC--chhHHhhhhcccCCc--eEEEEecCCCHHhhhCCCCEEEE
Q 022947 45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTNA--VVRGFLGQQQLEDALTGMDIVII 120 (289)
Q Consensus 45 ~~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~--~~g~~~DL~~~~~~~--~v~~~~~t~d~~eal~~aDiVIi 120 (289)
+.+||+|||| |+||+++++.++..++ .+|+|+|+++ +.++++|+.|..... .... ..++|+ ++++|||+||+
T Consensus 4 ~~~KI~IIGa-G~vG~~ia~~l~~~~~-~~l~L~Di~~~~~~g~~lDl~~~~~~~~~~~~i-~~~~d~-~~l~~ADiVVi 79 (319)
T PTZ00117 4 KRKKISMIGA-GQIGSTVALLILQKNL-GDVVLYDVIKGVPQGKALDLKHFSTLVGSNINI-LGTNNY-EDIKDSDVVVI 79 (319)
T ss_pred CCcEEEEECC-CHHHHHHHHHHHHCCC-CeEEEEECCCccchhHHHHHhhhccccCCCeEE-EeCCCH-HHhCCCCEEEE
Confidence 4569999998 9999999999999987 5899999988 578899999975321 2232 234677 59999999999
Q ss_pred cCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecCCCcccHHHHHHHHHHhCCCCCCcEEEee-eccHHHH
Q 022947 121 PAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGVT-MLDVVRA 199 (289)
Q Consensus 121 tag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~aiviv~tNPvd~~t~~~~~~~~~~~~~~~~kviG~t-~lds~R~ 199 (289)
++|.++++|++|.|++..|.++++++++.|+++||++|++++|||+|++|+++ ++.+++|++||+|+| .||++|+
T Consensus 80 tag~~~~~g~~r~dll~~n~~i~~~i~~~i~~~~p~a~vivvsNP~di~t~~~----~~~s~~p~~rviG~gt~lds~R~ 155 (319)
T PTZ00117 80 TAGVQRKEEMTREDLLTINGKIMKSVAESVKKYCPNAFVICVTNPLDCMVKVF----QEKSGIPSNKICGMAGVLDSSRF 155 (319)
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecChHHHHHHHH----HHhhCCCcccEEEecchHHHHHH
Confidence 99999999999999999999999999999999999999999999999999654 667899999999996 8999999
Q ss_pred HHHHHHHcCCCCcceeeeEEcccCCCeeeeecccccCCC----------CCChhhHHHHHHHHHhhhHHHhhhcCCCCcc
Q 022947 200 NTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSC----------SLTPTEIDYLTDRIQNGGTEVVEAKTGAGSA 269 (289)
Q Consensus 200 ~~~lA~~l~v~~~~V~~~V~G~hg~~~~vp~~S~~~v~~----------~~~~~~~~~i~~~v~~~g~~i~~~k~g~g~t 269 (289)
+++||++++++|++|+++|+||||+ ++||+||++++++ .+++++++++.++++++|++|++++ |||++
T Consensus 156 ~~~la~~l~v~~~~v~~~viGeHg~-~~v~~~s~~~v~g~p~~~~~~~~~~~~~~~~~i~~~v~~~g~~ii~~~-~kg~t 233 (319)
T PTZ00117 156 RCNLAEKLGVSPGDVSAVVIGGHGD-LMVPLPRYCTVNGIPLSDFVKKGAITEKEINEIIKKTRNMGGEIVKLL-KKGSA 233 (319)
T ss_pred HHHHHHHhCCCcccceEEEeecCCC-cEEeceeeceECCEEHHHHhhccccCHHHHHHHHHHHHHHHHHHHhhc-CCCCh
Confidence 9999999999999999999999998 9999999998854 1455668899999999999999986 78999
Q ss_pred hHHHHHHHHHHHHHHhcCCC
Q 022947 270 TLSMCRHMLLPSLPMLVSEA 289 (289)
Q Consensus 270 ~~s~A~a~~~~~~ail~~~~ 289 (289)
+||+|.++++++++|++|+.
T Consensus 234 ~~~~a~a~~~~~~ail~~~~ 253 (319)
T PTZ00117 234 FFAPAAAIVAMIEAYLKDEK 253 (319)
T ss_pred HHHHHHHHHHHHHHHhcCCC
Confidence 99999999999999999873
No 24
>cd00300 LDH_like L-lactate dehydrogenase-like enzymes. Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot
Probab=100.00 E-value=1.4e-49 Score=368.30 Aligned_cols=230 Identities=30% Similarity=0.461 Sum_probs=206.3
Q ss_pred EEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCC--chhHHhhhhcccCC-ceEEEEecCCCHHhhhCCCCEEEEcCCCC
Q 022947 49 VAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTN-AVVRGFLGQQQLEDALTGMDIVIIPAGVP 125 (289)
Q Consensus 49 I~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~--~~g~~~DL~~~~~~-~~v~~~~~t~d~~eal~~aDiVIitag~~ 125 (289)
|+|||+ |.||+++++.|+..+++.||+|+|+++ +.++++||.|.... ...+... ++|+ +++++||+||+++|.|
T Consensus 1 i~iiGa-G~VG~~~a~~l~~~~~~~el~l~D~~~~~~~g~~~DL~~~~~~~~~~~i~~-~~~~-~~l~~aDiVIitag~p 77 (300)
T cd00300 1 ITIIGA-GNVGAAVAFALIAKGLASELVLVDVNEEKAKGDALDLSHASAFLATGTIVR-GGDY-ADAADADIVVITAGAP 77 (300)
T ss_pred CEEECC-CHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHhHHHhccccCCCeEEE-CCCH-HHhCCCCEEEEcCCCC
Confidence 689998 999999999999999999999999988 68999999998642 2223322 3465 7999999999999999
Q ss_pred CCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecCCCcccHHHHHHHHHHhCCCCCCcEEEe-eeccHHHHHHHHH
Q 022947 126 RKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVVRANTFVA 204 (289)
Q Consensus 126 ~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~aiviv~tNPvd~~t~~~~~~~~~~~~~~~~kviG~-t~lds~R~~~~lA 204 (289)
+++|++|.+++.+|+++++++++.|+++||+++++++|||+|+||+++ ++.+++|++||||+ |.||++|+++++|
T Consensus 78 ~~~~~~R~~l~~~n~~i~~~~~~~i~~~~p~~~viv~sNP~d~~~~~~----~~~sg~~~~kviG~gt~lDs~r~~~~la 153 (300)
T cd00300 78 RKPGETRLDLINRNAPILRSVITNLKKYGPDAIILVVSNPVDILTYVA----QKLSGLPKNRVIGSGTLLDSARFRSLLA 153 (300)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccChHHHHHHHH----HHHhCcCHHHEEecCCcHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999754 66789999999999 6999999999999
Q ss_pred HHcCCCCcceeeeEEcccCCCeeeeecccccCCC-C----C--ChhhHHHHHHHHHhhhHHHhhhcCCCCcchHHHHHHH
Q 022947 205 EVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSC-S----L--TPTEIDYLTDRIQNGGTEVVEAKTGAGSATLSMCRHM 277 (289)
Q Consensus 205 ~~l~v~~~~V~~~V~G~hg~~~~vp~~S~~~v~~-~----~--~~~~~~~i~~~v~~~g~~i~~~k~g~g~t~~s~A~a~ 277 (289)
+++++++++|+++|+||||+ ++||+||++++++ + + ++.++++|.+++++++++|++.| |+++|++|.++
T Consensus 154 ~~l~v~~~~v~~~viGeHg~-s~v~~~S~~~v~g~p~~~~~~~~~~~~~~l~~~v~~~~~~ii~~k---g~t~~~~a~a~ 229 (300)
T cd00300 154 EKLDVDPQSVHAYVLGEHGD-SQVVAWSTATVGGLPLEELAPFTKLDLEAIEEEVRTSGYEIIRLK---GATNYGIATAI 229 (300)
T ss_pred HHhCCCcccEEEEEEeccCC-ceeeeeeeeEECCEEHHHhhcccHHHHHHHHHHHHHHHHHHHHcc---CcchHHHHHHH
Confidence 99999999999999999998 8999999999864 1 1 23457899999999999999954 78999999999
Q ss_pred HHHHHHHhcCCC
Q 022947 278 LLPSLPMLVSEA 289 (289)
Q Consensus 278 ~~~~~ail~~~~ 289 (289)
++++++|++|+.
T Consensus 230 ~~~~~ai~~~~~ 241 (300)
T cd00300 230 ADIVKSILLDER 241 (300)
T ss_pred HHHHHHHHcCCC
Confidence 999999999863
No 25
>TIGR01758 MDH_euk_cyt malate dehydrogenase, NAD-dependent. This model represents the NAD-dependent cytosolic malate dehydrogenase from eukaryotes. The enzyme from pig has been studied by X-ray crystallography
Probab=100.00 E-value=9.3e-49 Score=365.98 Aligned_cols=233 Identities=25% Similarity=0.358 Sum_probs=202.1
Q ss_pred EEEEEcCCCccHHHHHHHHHhCCCcc-----EEEEEeCCC----chhHHhhhhcccCCceEEEEecCCCHHhhhCCCCEE
Q 022947 48 KVAVLGAAGGIGQPLAMLMKINPLVS-----VLHLYDVVN----TPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIV 118 (289)
Q Consensus 48 KI~IIGaaG~VGs~la~~L~~~g~~~-----eI~LvD~~~----~~g~~~DL~~~~~~~~v~~~~~t~d~~eal~~aDiV 118 (289)
||+||||+|.||+++++.|+.+++++ +|+|+|+++ ++++++||.|+..... ..+..+++.+++++|||+|
T Consensus 1 ~V~IiGaaG~VG~~~a~~l~~~~~~~~~~e~el~LiD~~~~~~~a~g~~~Dl~d~~~~~~-~~~~~~~~~~~~~~~aDiV 79 (324)
T TIGR01758 1 RVVVTGAAGQIGYALLPMIARGRMLGKDQPIILHLLDIPPAMKVLEGVVMELMDCAFPLL-DGVVPTHDPAVAFTDVDVA 79 (324)
T ss_pred CEEEECCCcHHHHHHHHHHHhccccCCCCccEEEEEecCCcccccceeEeehhcccchhc-CceeccCChHHHhCCCCEE
Confidence 69999999999999999999988875 799999955 5789999999873111 1112233435899999999
Q ss_pred EEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhC-CCcEEEEecCCCcccHHHHHHHHHHhCCCCCCcEEEe-eeccH
Q 022947 119 IIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCC-PKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDV 196 (289)
Q Consensus 119 Iitag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~-p~aiviv~tNPvd~~t~~~~~~~~~~~~~~~~kviG~-t~lds 196 (289)
|++||.|+++|++|.+++..|+++++++++.|++++ |+++++++|||+|+|||++ ++.++++|+++||+ |.|||
T Consensus 80 VitAG~~~~~~~tr~~ll~~N~~i~k~i~~~i~~~~~~~~iiivvsNPvDv~t~v~----~~~sg~~~~~vig~gt~LDs 155 (324)
T TIGR01758 80 ILVGAFPRKEGMERRDLLSKNVKIFKEQGRALDKLAKKDCKVLVVGNPANTNALVL----SNYAPSIPPKNFSALTRLDH 155 (324)
T ss_pred EEcCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEeCCcHHHHHHHH----HHHcCCCCcceEEEeeehHH
Confidence 999999999999999999999999999999999996 9999999999999999765 56677788889999 89999
Q ss_pred HHHHHHHHHHcCCCCccee-eeEEcccCCCeeeeecccccCC-C----C----CChhh--HHHHHHHHHhhhHHHhhhcC
Q 022947 197 VRANTFVAEVLGLDPREVD-VPVVGGHAGVTILPLLSQVKPS-C----S----LTPTE--IDYLTDRIQNGGTEVVEAKT 264 (289)
Q Consensus 197 ~R~~~~lA~~l~v~~~~V~-~~V~G~hg~~~~vp~~S~~~v~-~----~----~~~~~--~~~i~~~v~~~g~~i~~~k~ 264 (289)
+|||++||++++++|++|+ ++||||||+ ++||+||+++++ + + +++++ +++|.++++++|++|+++|
T Consensus 156 ~R~r~~la~~l~v~~~~V~~~~V~GeHG~-s~v~~~S~~~v~~g~~~~pl~~~~~~~~~~~~~i~~~v~~~g~~Ii~~k- 233 (324)
T TIGR01758 156 NRALAQVAERAGVPVSDVKNVIIWGNHSS-TQYPDVNHATVTKGGKQKPVREAIKDDAYLDGEFITTVQQRGAAIIRAR- 233 (324)
T ss_pred HHHHHHHHHHhCCChhhceEeEEEECCCC-CcccccccceecCCCCccCHHHHhcchhhHHHHHHHHHHhCHHHHHhcc-
Confidence 9999999999999999996 699999999 999999999997 5 1 22222 5799999999999999975
Q ss_pred CCCcchHHHHHHHHHHHHHHh--cCC
Q 022947 265 GAGSATLSMCRHMLLPSLPML--VSE 288 (289)
Q Consensus 265 g~g~t~~s~A~a~~~~~~ail--~~~ 288 (289)
+++++|++|.++++++++|+ .|+
T Consensus 234 -~~~t~~~ia~~~~~i~~ai~~~~~~ 258 (324)
T TIGR01758 234 -KLSSALSAAKAAVDQMHDWVLGTPE 258 (324)
T ss_pred -CCCHHHHHHHHHHHHHHHHhcCCCC
Confidence 35899999999999999999 665
No 26
>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=100.00 E-value=1.9e-48 Score=362.13 Aligned_cols=231 Identities=29% Similarity=0.452 Sum_probs=207.7
Q ss_pred CEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCC--chhHHhhhhcccC-CceEEEEecCCCHHhhhCCCCEEEEcCC
Q 022947 47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDT-NAVVRGFLGQQQLEDALTGMDIVIIPAG 123 (289)
Q Consensus 47 ~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~--~~g~~~DL~~~~~-~~~v~~~~~t~d~~eal~~aDiVIitag 123 (289)
|||+|||+ |.||+++++.|+..|+..+|+|+|+++ ..++++|+.|... ....... ++|+ +++++||+||+++|
T Consensus 1 mkI~IIGa-G~VG~~~a~~l~~~g~~~ev~l~D~~~~~~~g~a~dl~~~~~~~~~~~i~--~~d~-~~l~~aDiViita~ 76 (308)
T cd05292 1 MKVAIVGA-GFVGSTTAYALLLRGLASEIVLVDINKAKAEGEAMDLAHGTPFVKPVRIY--AGDY-ADCKGADVVVITAG 76 (308)
T ss_pred CEEEEECC-CHHHHHHHHHHHHcCCCCEEEEEECCchhhhhHHHHHHccccccCCeEEe--eCCH-HHhCCCCEEEEccC
Confidence 59999998 999999999999999888999999987 5789999998753 1223333 3466 78999999999999
Q ss_pred CCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecCCCcccHHHHHHHHHHhCCCCCCcEEEe-eeccHHHHHHH
Q 022947 124 VPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVVRANTF 202 (289)
Q Consensus 124 ~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~aiviv~tNPvd~~t~~~~~~~~~~~~~~~~kviG~-t~lds~R~~~~ 202 (289)
.+++++++|.+++..|+++++++++.|++++|+++++++|||+|+||+++ ++.+|||++||||+ |.|||+|++++
T Consensus 77 ~~~~~~~~r~dl~~~n~~i~~~~~~~l~~~~~~giiiv~tNP~d~~~~~~----~~~sg~p~~~viG~gt~LDs~R~~~~ 152 (308)
T cd05292 77 ANQKPGETRLDLLKRNVAIFKEIIPQILKYAPDAILLVVTNPVDVLTYVA----YKLSGLPPNRVIGSGTVLDTARFRYL 152 (308)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHHH----HHHHCcCHHHeecccchhhHHHHHHH
Confidence 99999999999999999999999999999999999999999999999765 56679999999999 89999999999
Q ss_pred HHHHcCCCCcceeeeEEcccCCCeeeeecccccCCC------------CCChhhHHHHHHHHHhhhHHHhhhcCCCCcch
Q 022947 203 VAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSC------------SLTPTEIDYLTDRIQNGGTEVVEAKTGAGSAT 270 (289)
Q Consensus 203 lA~~l~v~~~~V~~~V~G~hg~~~~vp~~S~~~v~~------------~~~~~~~~~i~~~v~~~g~~i~~~k~g~g~t~ 270 (289)
||+++++++++|+++||||||+ ++||+||++++++ .++++++++|.++++++|++|++.| |+|+
T Consensus 153 la~~~~v~~~~v~~~viGeHg~-~~~~~~S~~~v~g~~~~~~~~~~~~~~~~~~~~~l~~~v~~~g~~ii~~k---g~t~ 228 (308)
T cd05292 153 LGEHLGVDPRSVHAYIIGEHGD-SEVAVWSSANIGGVPLDEFCKLCGRPFDEEVREEIFEEVRNAAYEIIERK---GATY 228 (308)
T ss_pred HHHHhCCCccceeceeeccCCC-cEEecceeeeECCEEHHHHhhhcccccCHHHHHHHHHHHHHHHHHHHHcC---CccH
Confidence 9999999999999999999998 9999999998854 1233558899999999999999965 7899
Q ss_pred HHHHHHHHHHHHHHhcCCC
Q 022947 271 LSMCRHMLLPSLPMLVSEA 289 (289)
Q Consensus 271 ~s~A~a~~~~~~ail~~~~ 289 (289)
|++|.++++++++|++|+.
T Consensus 229 ~~~a~a~~~i~~ail~~~~ 247 (308)
T cd05292 229 YAIGLALARIVEAILRDEN 247 (308)
T ss_pred HHHHHHHHHHHHHHHcCCC
Confidence 9999999999999999973
No 27
>cd05294 LDH-like_MDH_nadp A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity. The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carbox
Probab=100.00 E-value=3.2e-47 Score=353.91 Aligned_cols=233 Identities=27% Similarity=0.428 Sum_probs=206.2
Q ss_pred CEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCC----chhHHhhhhcccCC--ceEEEEecCCCHHhhhCCCCEEEE
Q 022947 47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN----TPGVTADISHMDTN--AVVRGFLGQQQLEDALTGMDIVII 120 (289)
Q Consensus 47 ~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~----~~g~~~DL~~~~~~--~~v~~~~~t~d~~eal~~aDiVIi 120 (289)
|||+|+|++|+||++++..|+..|+..+|+|+|+++ +.+..+|+.|.... ...+. ..++|+ +++++||+||+
T Consensus 1 ~kI~IiGatG~vG~~~a~~l~~~g~~~~v~lvd~~~~~~~l~~~~~dl~d~~~~~~~~~~i-~~~~d~-~~l~~aDiVii 78 (309)
T cd05294 1 MKVSIIGASGRVGSATALLLAKEDVVKEINLISRPKSLEKLKGLRLDIYDALAAAGIDAEI-KISSDL-SDVAGSDIVII 78 (309)
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCEEEEEECcccccccccccchhhhchhccCCCcEE-EECCCH-HHhCCCCEEEE
Confidence 699999988999999999999999988999999954 57888999986421 12222 224565 67999999999
Q ss_pred cCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecCCCcccHHHHHHHHHHhCCCCCCcEEEe-eeccHHHH
Q 022947 121 PAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVVRA 199 (289)
Q Consensus 121 tag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~aiviv~tNPvd~~t~~~~~~~~~~~~~~~~kviG~-t~lds~R~ 199 (289)
++|.|+++|++|.+++..|+++++++++.|++++|++++++++||+|++|+++ ++.+++|++||||+ |.||++|+
T Consensus 79 tag~p~~~~~~r~dl~~~n~~i~~~~~~~i~~~~~~~~viv~~npvd~~t~~~----~~~~g~~~~~viG~gt~LDs~R~ 154 (309)
T cd05294 79 TAGVPRKEGMSRLDLAKKNAKIVKKYAKQIAEFAPDTKILVVTNPVDVMTYKA----LKESGFDKNRVFGLGTHLDSLRF 154 (309)
T ss_pred ecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCCchHHHHHHH----HHhcCCCHHHEeeccchHHHHHH
Confidence 99999999999999999999999999999999999999999999999999764 56788999999999 68999999
Q ss_pred HHHHHHHcCCCCcceeeeEEcccCCCeeeeecccccCCC-C----C--ChhhHHHHHHHHHhhhHHHhhhcCCCCcchHH
Q 022947 200 NTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSC-S----L--TPTEIDYLTDRIQNGGTEVVEAKTGAGSATLS 272 (289)
Q Consensus 200 ~~~lA~~l~v~~~~V~~~V~G~hg~~~~vp~~S~~~v~~-~----~--~~~~~~~i~~~v~~~g~~i~~~k~g~g~t~~s 272 (289)
+++||+++++++++|+++|+||||+ +|||+||++++++ + + .+.++++|.++++++|++|++.| |+++||
T Consensus 155 ~~~la~~l~v~~~~v~~~viGeHg~-s~~~~~S~~~i~g~~~~~~~~~~~~~~~~i~~~v~~~g~~i~~~k---g~t~~~ 230 (309)
T cd05294 155 KVAIAKHFNVHISEVHTRIIGEHGD-SMVPLISSTSIGGIPIKRFPEYKDFDVEKIVETVKNAGQNIISLK---GGSEYG 230 (309)
T ss_pred HHHHHHHHCcChHHeEEEEEecCCC-ceEeeeeecEECCEEHHHhhcccHHHHHHHHHHHHHHHHHHHHhc---CCchhh
Confidence 9999999999999999999999998 9999999999864 1 2 24457899999999999999976 568899
Q ss_pred HHHHHHHHHHHHhcCCC
Q 022947 273 MCRHMLLPSLPMLVSEA 289 (289)
Q Consensus 273 ~A~a~~~~~~ail~~~~ 289 (289)
+|.++++++++|++|+.
T Consensus 231 ~a~~~~~ii~ail~~~~ 247 (309)
T cd05294 231 PASAISNLVRTIANDER 247 (309)
T ss_pred HHHHHHHHHHHHHCCCC
Confidence 99999999999999974
No 28
>cd01336 MDH_cytoplasmic_cytosolic Cytoplasmic and cytosolic Malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are eukaryotic MDHs localized to the cytoplasm and cytosol. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=100.00 E-value=1.5e-47 Score=358.12 Aligned_cols=233 Identities=25% Similarity=0.342 Sum_probs=202.9
Q ss_pred CCCEEEEEcCCCccHHHHHHHHHhCCCcc-----EEEEEeCCC----chhHHhhhhcccC--CceEEEEecCCCHHhhhC
Q 022947 45 PGFKVAVLGAAGGIGQPLAMLMKINPLVS-----VLHLYDVVN----TPGVTADISHMDT--NAVVRGFLGQQQLEDALT 113 (289)
Q Consensus 45 ~~~KI~IIGaaG~VGs~la~~L~~~g~~~-----eI~LvD~~~----~~g~~~DL~~~~~--~~~v~~~~~t~d~~eal~ 113 (289)
++.||+||||+|+||+++++.|+..++++ ||+|+|+++ +.++++|+.|+.. ...+.. +.+++++++
T Consensus 1 ~~~kV~I~GAaG~VG~~la~~L~~~~~~~~~~~~el~L~D~~~~~~~~~g~~~Dl~d~~~~~~~~~~~---~~~~~~~l~ 77 (325)
T cd01336 1 EPIRVLVTGAAGQIAYSLLPMIAKGDVFGPDQPVILHLLDIPPALKALEGVVMELQDCAFPLLKSVVA---TTDPEEAFK 77 (325)
T ss_pred CCeEEEEECCCCHHHHHHHHHHHhCcccCCCCCcEEEEEEcCCccccccceeeehhhccccccCCcee---cCCHHHHhC
Confidence 36799999999999999999999988764 999999965 5788899999752 223332 346679999
Q ss_pred CCCEEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhC-CCcEEEEecCCCcccHHHHHHHHHHh-CCCCCCcEEEe
Q 022947 114 GMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCC-PKAIVNLISNPVNSTVPIAAEVFKKV-GTYDPKRLLGV 191 (289)
Q Consensus 114 ~aDiVIitag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~-p~aiviv~tNPvd~~t~~~~~~~~~~-~~~~~~kviG~ 191 (289)
|||+||++||.+++++++|.+++..|+++++++++.|++++ |+++++++|||+|+|||++ ++. +++|+++ ||+
T Consensus 78 ~aDiVI~tAG~~~~~~~~R~~l~~~N~~i~~~i~~~i~~~~~~~~iiivvsNPvD~~t~~~----~k~~~~~~~~~-ig~ 152 (325)
T cd01336 78 DVDVAILVGAMPRKEGMERKDLLKANVKIFKEQGEALDKYAKKNVKVLVVGNPANTNALIL----LKYAPSIPKEN-FTA 152 (325)
T ss_pred CCCEEEEeCCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEecCcHHHHHHHH----HHHcCCCCHHH-EEe
Confidence 99999999999999999999999999999999999999997 8999999999999999875 455 5788777 777
Q ss_pred -eeccHHHHHHHHHHHcCCCCccee-eeEEcccCCCeeeeecccccCC----CC-----CChhh--HHHHHHHHHhhhHH
Q 022947 192 -TMLDVVRANTFVAEVLGLDPREVD-VPVVGGHAGVTILPLLSQVKPS----CS-----LTPTE--IDYLTDRIQNGGTE 258 (289)
Q Consensus 192 -t~lds~R~~~~lA~~l~v~~~~V~-~~V~G~hg~~~~vp~~S~~~v~----~~-----~~~~~--~~~i~~~v~~~g~~ 258 (289)
|.||++||++++|++|++++++|+ .+||||||+ +|||+||+++++ +. +++++ +++|.++++++|++
T Consensus 153 gt~LDs~R~r~~la~~l~v~~~~v~~~~V~GeHG~-s~~~~~S~~~v~~~~~g~~~~~~~~~~~~~~~~i~~~v~~~g~~ 231 (325)
T cd01336 153 LTRLDHNRAKSQIALKLGVPVSDVKNVIIWGNHSS-TQYPDVNHATVELNGKGKPAREAVKDDAWLNGEFISTVQKRGAA 231 (325)
T ss_pred eehHHHHHHHHHHHHHhCcChhhceEeEEEEcCCC-CeeeccccceeecCCCCccHHHHhcccchhHHHHHHHHHhhHHH
Confidence 899999999999999999999997 559999999 999999999986 41 23322 58999999999999
Q ss_pred HhhhcCCCCcchHHHHHHHHHHHHHHhcCC
Q 022947 259 VVEAKTGAGSATLSMCRHMLLPSLPMLVSE 288 (289)
Q Consensus 259 i~~~k~g~g~t~~s~A~a~~~~~~ail~~~ 288 (289)
|+++| +|+|+||+|.++++++++|++|+
T Consensus 232 Ii~~~--~g~t~~~~a~~~~~i~~ail~~~ 259 (325)
T cd01336 232 VIKAR--KLSSAMSAAKAICDHVHDWWFGT 259 (325)
T ss_pred HHHcc--ccchHHHHHHHHHHHHHHHHcCC
Confidence 99974 47899999999999999999984
No 29
>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins. Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas
Probab=100.00 E-value=1.1e-46 Score=348.81 Aligned_cols=231 Identities=35% Similarity=0.584 Sum_probs=205.7
Q ss_pred EEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCC--chhHHhhhhcccC--CceEEEEecCCCHHhhhCCCCEEEEcCCC
Q 022947 49 VAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDT--NAVVRGFLGQQQLEDALTGMDIVIIPAGV 124 (289)
Q Consensus 49 I~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~--~~g~~~DL~~~~~--~~~v~~~~~t~d~~eal~~aDiVIitag~ 124 (289)
|+|||| |+||+++++.++..++. +|+|+|+++ +.+.++|+.+... ....+.. .++|+ +++++||+||+++|.
T Consensus 1 I~IIGa-G~vG~~ia~~la~~~l~-eV~L~Di~e~~~~g~~~dl~~~~~~~~~~~~I~-~t~d~-~~l~dADiVIit~g~ 76 (300)
T cd01339 1 ISIIGA-GNVGATLAQLLALKELG-DVVLLDIVEGLPQGKALDISQAAPILGSDTKVT-GTNDY-EDIAGSDVVVITAGI 76 (300)
T ss_pred CEEECC-CHHHHHHHHHHHhCCCc-EEEEEeCCCcHHHHHHHHHHHhhhhcCCCeEEE-EcCCH-HHhCCCCEEEEecCC
Confidence 689999 99999999999999987 999999988 5677788888642 1122322 24566 679999999999999
Q ss_pred CCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecCCCcccHHHHHHHHHHhCCCCCCcEEEee-eccHHHHHHHH
Q 022947 125 PRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGVT-MLDVVRANTFV 203 (289)
Q Consensus 125 ~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~aiviv~tNPvd~~t~~~~~~~~~~~~~~~~kviG~t-~lds~R~~~~l 203 (289)
|+++|++|.+++..|++++++++++|++++|+++++++|||+|++|+++ ++.+++||+||||+| .||++|++++|
T Consensus 77 p~~~~~~r~e~~~~n~~i~~~i~~~i~~~~p~~~iIv~sNP~di~t~~~----~~~s~~~~~rviGlgt~lds~r~~~~l 152 (300)
T cd01339 77 PRKPGMSRDDLLGTNAKIVKEVAENIKKYAPNAIVIVVTNPLDVMTYVA----YKASGFPRNRVIGMAGVLDSARFRYFI 152 (300)
T ss_pred CCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHHH----HHHhCCCHHHEEEecchHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999765 567899999999996 89999999999
Q ss_pred HHHcCCCCcceeeeEEcccCCCeeeeecccccCCC-C----CChhhHHHHHHHHHhhhHHHhhhcCCCCcchHHHHHHHH
Q 022947 204 AEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSC-S----LTPTEIDYLTDRIQNGGTEVVEAKTGAGSATLSMCRHML 278 (289)
Q Consensus 204 A~~l~v~~~~V~~~V~G~hg~~~~vp~~S~~~v~~-~----~~~~~~~~i~~~v~~~g~~i~~~k~g~g~t~~s~A~a~~ 278 (289)
|++|++++++|+++|+||||+ +++|+||++++++ + ++++++++|.+++++++++|++.| |+|+|+|++|.+++
T Consensus 153 a~~l~v~~~~v~~~v~G~hg~-~~~~~~s~~~v~g~~~~~~~~~~~~~~~~~~v~~~~~~ii~~k-~~g~t~~~~a~~~~ 230 (300)
T cd01339 153 AEELGVSVKDVQAMVLGGHGD-TMVPLPRYSTVGGIPLTELITKEEIDEIVERTRNGGAEIVNLL-KTGSAYYAPAAAIA 230 (300)
T ss_pred HHHhCCCccceEEEEEeCCCC-cceecceecEECCEEHHHhcChHHHHHHHHHHHHHHHHHHhhc-CCCchhHHHHHHHH
Confidence 999999999999999999998 8999999999864 1 455568999999999999999988 78999999999999
Q ss_pred HHHHHHhcCCC
Q 022947 279 LPSLPMLVSEA 289 (289)
Q Consensus 279 ~~~~ail~~~~ 289 (289)
+|+++|++|+.
T Consensus 231 ~i~~ail~~~~ 241 (300)
T cd01339 231 EMVEAILKDKK 241 (300)
T ss_pred HHHHHHHcCCC
Confidence 99999999863
No 30
>PRK06223 malate dehydrogenase; Reviewed
Probab=100.00 E-value=2.4e-46 Score=347.27 Aligned_cols=234 Identities=34% Similarity=0.574 Sum_probs=207.6
Q ss_pred CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCC--chhHHhhhhcccCC--ceEEEEecCCCHHhhhCCCCEEEEc
Q 022947 46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTN--AVVRGFLGQQQLEDALTGMDIVIIP 121 (289)
Q Consensus 46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~--~~g~~~DL~~~~~~--~~v~~~~~t~d~~eal~~aDiVIit 121 (289)
++||+|||+ |+||+++++.++..++. ||+|+|+++ .++.++|+.+.... ...+. ..++|+ +++++||+||++
T Consensus 2 ~~KI~VIGa-G~vG~~ia~~la~~~~~-ev~L~D~~~~~~~~~~~dl~~~~~~~~~~~~i-~~~~d~-~~~~~aDiVii~ 77 (307)
T PRK06223 2 RKKISIIGA-GNVGATLAHLLALKELG-DVVLFDIVEGVPQGKALDIAEAAPVEGFDTKI-TGTNDY-EDIAGSDVVVIT 77 (307)
T ss_pred CCEEEEECC-CHHHHHHHHHHHhCCCe-EEEEEECCCchhHHHHHHHHhhhhhcCCCcEE-EeCCCH-HHHCCCCEEEEC
Confidence 479999999 99999999999999877 999999988 57888888886421 11222 234577 789999999999
Q ss_pred CCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecCCCcccHHHHHHHHHHhCCCCCCcEEEee-eccHHHHH
Q 022947 122 AGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGVT-MLDVVRAN 200 (289)
Q Consensus 122 ag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~aiviv~tNPvd~~t~~~~~~~~~~~~~~~~kviG~t-~lds~R~~ 200 (289)
+|.|+++|++|.+++.+|+++++++++.|++++|+++++++|||+|++|+++ ++.+++||+||||+| .||++|++
T Consensus 78 ~~~p~~~~~~r~~~~~~n~~i~~~i~~~i~~~~~~~~viv~tNP~d~~~~~~----~~~s~~~~~~viG~gt~lds~r~~ 153 (307)
T PRK06223 78 AGVPRKPGMSRDDLLGINAKIMKDVAEGIKKYAPDAIVIVVTNPVDAMTYVA----LKESGFPKNRVIGMAGVLDSARFR 153 (307)
T ss_pred CCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHHH----HHHhCCCcccEEEeCCCcHHHHHH
Confidence 9999999999999999999999999999999999999999999999999765 567899999999995 99999999
Q ss_pred HHHHHHcCCCCcceeeeEEcccCCCeeeeecccccCCC-C----CChhhHHHHHHHHHhhhHHHhhhcCCCCcchHHHHH
Q 022947 201 TFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSC-S----LTPTEIDYLTDRIQNGGTEVVEAKTGAGSATLSMCR 275 (289)
Q Consensus 201 ~~lA~~l~v~~~~V~~~V~G~hg~~~~vp~~S~~~v~~-~----~~~~~~~~i~~~v~~~g~~i~~~k~g~g~t~~s~A~ 275 (289)
++||+++++++++|+++|+||||+ +++|+||++++.+ + ++++.+++|.+++++++++|++.+ +|+++.|++|.
T Consensus 154 ~~la~~l~v~~~~v~~~viGehg~-s~~p~~S~~~v~g~~~~~~~~~~~~~~l~~~v~~~~~~ii~~~-~kg~t~~~~A~ 231 (307)
T PRK06223 154 TFIAEELNVSVKDVTAFVLGGHGD-SMVPLVRYSTVGGIPLEDLLSKEKLDEIVERTRKGGAEIVGLL-KTGSAYYAPAA 231 (307)
T ss_pred HHHHHHhCcChhhCcccEEcCCCC-cceEchhhCEECCEEHHHhCChHHHHHHHHHHHHHHHHHHhhc-ccCChhHHHHH
Confidence 999999999999999999999998 9999999998853 1 455567999999999999999974 56889999999
Q ss_pred HHHHHHHHHhcCCC
Q 022947 276 HMLLPSLPMLVSEA 289 (289)
Q Consensus 276 a~~~~~~ail~~~~ 289 (289)
++++++++|+.|+.
T Consensus 232 ~~~~ii~ail~~~~ 245 (307)
T PRK06223 232 SIAEMVEAILKDKK 245 (307)
T ss_pred HHHHHHHHHHcCCC
Confidence 99999999999863
No 31
>cd05295 MDH_like Malate dehydrogenase-like. These MDH-like proteins are related to other groups in the MDH family but do not have conserved substrate and cofactor binding residues. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subgroup are uncharacterized MDH-like proteins from animals. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=100.00 E-value=1.1e-45 Score=355.50 Aligned_cols=232 Identities=14% Similarity=0.118 Sum_probs=199.9
Q ss_pred CCCCCEEEEEcCCCccHHHHHHHHHhCCCc-----cEEEEEeCC--C--chhHHhhhhcccC--CceEEEEecCCCHHhh
Q 022947 43 GSPGFKVAVLGAAGGIGQPLAMLMKINPLV-----SVLHLYDVV--N--TPGVTADISHMDT--NAVVRGFLGQQQLEDA 111 (289)
Q Consensus 43 ~~~~~KI~IIGaaG~VGs~la~~L~~~g~~-----~eI~LvD~~--~--~~g~~~DL~~~~~--~~~v~~~~~t~d~~ea 111 (289)
-.++.+|+|+||+|++|+++.+.++...++ -.|+|+|+. + ++|+++||.|+.. ...+... +++ +++
T Consensus 120 ~~~p~~V~vtgAag~i~Y~l~~~ia~G~~fG~~~~v~L~LlDi~~~~~~l~G~amDL~D~a~pll~~v~i~--~~~-~ea 196 (452)
T cd05295 120 KINPLQVCITNASAPLCYHLIPSLASGEVFGMEEEISIHLLDSPENLEKLKGLVMEVEDLAFPLLRGISVT--TDL-DVA 196 (452)
T ss_pred CCCceEEEEecCcHHHHHHHHHHHhCCcccCCCCeEEEEEEcCCCchhhHHHHHHHHHHhHHhhcCCcEEE--ECC-HHH
Confidence 345679999999999999999999986443 369999994 3 6899999999862 1234433 234 599
Q ss_pred hCCCCEEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCC--CcEEEEecCCCcccHHHHHHHHHHhC-CCCCCcE
Q 022947 112 LTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCP--KAIVNLISNPVNSTVPIAAEVFKKVG-TYDPKRL 188 (289)
Q Consensus 112 l~~aDiVIitag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p--~aiviv~tNPvd~~t~~~~~~~~~~~-~~~~~kv 188 (289)
++|||+||+++|.|+++|++|.|++..|.++++++++.|++++| +++++++|||+|+||+++ ++.+ ++|++||
T Consensus 197 ~~daDvvIitag~prk~G~~R~DLL~~N~~Ifk~~g~~I~~~a~~~~~VlVv~tNPvD~~t~i~----~k~apgiP~~rV 272 (452)
T cd05295 197 FKDAHVIVLLDDFLIKEGEDLEGCIRSRVAICQLYGPLIEKNAKEDVKVIVAGRTFLNLKTSIL----IKYAPSIPRKNI 272 (452)
T ss_pred hCCCCEEEECCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEeCCcHHHHHHHH----HHHcCCCCHHHE
Confidence 99999999999999999999999999999999999999999999 999999999999999875 4455 9999999
Q ss_pred EEeeeccHHHHHHHHHHHcCCCCcce-eeeEEcccCCCeeeeecccccCCC-------------C----CChhh--HHHH
Q 022947 189 LGVTMLDVVRANTFVAEVLGLDPREV-DVPVVGGHAGVTILPLLSQVKPSC-------------S----LTPTE--IDYL 248 (289)
Q Consensus 189 iG~t~lds~R~~~~lA~~l~v~~~~V-~~~V~G~hg~~~~vp~~S~~~v~~-------------~----~~~~~--~~~i 248 (289)
+|++.||++|++++||+++|+++++| +++||||||+ +|||+||++++++ + +++.+ .+++
T Consensus 273 ig~gtlds~R~r~~LA~kl~V~~~~V~~~~VwGeHG~-sqvpd~S~a~V~G~~~a~~~p~~~~~pl~e~i~d~~w~~~~~ 351 (452)
T cd05295 273 IAVARLQENRAKALLARKLNVNSAGIKDVIVWGNIGG-NTYIDLSKARVYRYDSAIWGPPNYSRPVLELVHDSKWINGEF 351 (452)
T ss_pred EEecchHHHHHHHHHHHHhCcCHHHceeeEEEEccCC-ceeeeeeEEEEcccccccccccccCccHHHHhcchhhhHHHH
Confidence 99987889999999999999999999 5799999998 9999999999854 1 23333 3678
Q ss_pred HHHHHhhhHHHhhhcCCCCcchHHHHHHHHHHHHHHhcCC
Q 022947 249 TDRIQNGGTEVVEAKTGAGSATLSMCRHMLLPSLPMLVSE 288 (289)
Q Consensus 249 ~~~v~~~g~~i~~~k~g~g~t~~s~A~a~~~~~~ail~~~ 288 (289)
.+.++++++ + +|++|+||+|.|+++++++|++|+
T Consensus 352 ~~~v~~rg~---~---rkgsT~~siA~A~~~iv~ail~~t 385 (452)
T cd05295 352 VATLKSLSS---S---LNHEAAISPAHAIATTLSYWYHGS 385 (452)
T ss_pred HHHHHHHHH---h---ccCChHHHHHHHHHHHHHHHHhCC
Confidence 889999998 3 468999999999999999999996
No 32
>PLN00135 malate dehydrogenase
Probab=100.00 E-value=4e-45 Score=338.90 Aligned_cols=204 Identities=24% Similarity=0.356 Sum_probs=180.4
Q ss_pred EEEEEeCCC----chhHHhhhhcccC-C-ceEEEEecCCCHHhhhCCCCEEEEcCCCCCCCCCchhhHHHhhHHHHHHHH
Q 022947 74 VLHLYDVVN----TPGVTADISHMDT-N-AVVRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLC 147 (289)
Q Consensus 74 eI~LvD~~~----~~g~~~DL~~~~~-~-~~v~~~~~t~d~~eal~~aDiVIitag~~~~~g~~r~d~~~~N~~i~~~i~ 147 (289)
.++|+|+++ ++|+++||.|+.. . ..+.. +++.+++++|||+||+|||.|+++|++|.|++..|++++++++
T Consensus 15 ~l~L~D~~~~~~~a~g~~~Dl~da~~~~~~~i~~---~~~~y~~~~daDiVVitAG~~~k~g~sR~dll~~N~~I~~~i~ 91 (309)
T PLN00135 15 ILHMLDIPPAAEALNGVKMELIDAAFPLLKGVVA---TTDVVEACKGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKSQA 91 (309)
T ss_pred EEEEecCcccccchhhHHHHHHhhhHHhcCCcEe---cCCHHHHhCCCCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHH
Confidence 899999976 5899999999862 2 23321 3453589999999999999999999999999999999999999
Q ss_pred HHHHHh-CCCcEEEEecCCCcccHHHHHHHHHHhCCCCCCcEEEe-eeccHHHHHHHHHHHcCCCCcce-eeeEEcccCC
Q 022947 148 EGIAKC-CPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREV-DVPVVGGHAG 224 (289)
Q Consensus 148 ~~i~~~-~p~aiviv~tNPvd~~t~~~~~~~~~~~~~~~~kviG~-t~lds~R~~~~lA~~l~v~~~~V-~~~V~G~hg~ 224 (289)
+.|+++ +|+++++++|||+|+|||++ ++.+++|++|+||+ |.|||+||+++||+++++++++| +++||||||+
T Consensus 92 ~~i~~~~~p~aivivvsNPvDv~t~~~----~~~sg~~~~~vig~gt~LDsaR~r~~la~~l~v~~~~V~~~~VlGeHG~ 167 (309)
T PLN00135 92 SALEKHAAPDCKVLVVANPANTNALIL----KEFAPSIPEKNITCLTRLDHNRALGQISERLGVPVSDVKNVIIWGNHSS 167 (309)
T ss_pred HHHHHhcCCCeEEEEeCCcHHHHHHHH----HHHcCCCCccEEEeeehHHHHHHHHHHHHHhCcChhhceeeEEEEcCCC
Confidence 999996 89999999999999999765 56789999999999 89999999999999999999999 6999999999
Q ss_pred CeeeeecccccC----CC-C----CChhh--HHHHHHHHHhhhHHHhhhcCCCCcchHHHHHHHHHHHHHHhcC
Q 022947 225 VTILPLLSQVKP----SC-S----LTPTE--IDYLTDRIQNGGTEVVEAKTGAGSATLSMCRHMLLPSLPMLVS 287 (289)
Q Consensus 225 ~~~vp~~S~~~v----~~-~----~~~~~--~~~i~~~v~~~g~~i~~~k~g~g~t~~s~A~a~~~~~~ail~~ 287 (289)
++||+||++++ ++ + +.+++ +++|.++++++|++|+++| ||+|+||+|.++++++++|+++
T Consensus 168 -s~v~~~S~a~v~~~~~g~p~~e~~~~~~~~~~~i~~~v~~~g~~Ii~~~--kg~t~~~ia~a~~~iv~ai~~~ 238 (309)
T PLN00135 168 -TQYPDVNHATVKTPSGEKPVRELVADDAWLNGEFITTVQQRGAAIIKAR--KLSSALSAASSACDHIRDWVLG 238 (309)
T ss_pred -ceeeccccceEecCCCCcCHHHHhCchhhHHHHHHHHHHHHHHHHHHcc--CccHHHHHHHHHHHHHHHHHhC
Confidence 99999999999 43 1 23333 6899999999999999974 5799999999999999999983
No 33
>TIGR01756 LDH_protist lactate dehydrogenase. This model represents a family of protist lactate dehydrogenases which have aparrently evolved from a recent protist malate dehydrogenase ancestor. Lactate dehydrogenase converts the hydroxyl at C-2 of lactate to a carbonyl in the product, pyruvate. The preference of this enzyme for NAD or NADP has not been determined. A critical residue in malate dehydrogenase, arginine-91 (T. vaginalis numbering) has been mutated to a leucine, eliminating the positive charge which complemeted the carboxylate in malate which is absent in lactate. Several other more subtle changes are proposed to make the active site smaller to accomadate the less bulky lactate molecule.
Probab=100.00 E-value=1e-43 Score=330.25 Aligned_cols=205 Identities=22% Similarity=0.288 Sum_probs=178.1
Q ss_pred EEEEEeCCC----chhHHhhhhcccCCceEEEEecCCCHHhhhCCCCEEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHH
Q 022947 74 VLHLYDVVN----TPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEG 149 (289)
Q Consensus 74 eI~LvD~~~----~~g~~~DL~~~~~~~~v~~~~~t~d~~eal~~aDiVIitag~~~~~g~~r~d~~~~N~~i~~~i~~~ 149 (289)
.++|+|+++ ++|+++||.|+. .+.......+++++++++|||+||+|||.|+++|++|.|++..|+++++++++.
T Consensus 17 ~l~L~D~~~~~~~a~g~a~Dl~d~~-~~~~~~~i~~~~~~~~~~daDiVVitaG~~~k~g~tR~dll~~N~~I~~~i~~~ 95 (313)
T TIGR01756 17 CLHLLEIPPALNRLEALAMELEDCA-FPNLAGTIVTTKLEEAFKDIDCAFLVASVPLKPGEVRADLLTKNTPIFKATGEA 95 (313)
T ss_pred EEEEecCCCccchhHhHHHHHHHhc-cccCCceEecCCHHHHhCCCCEEEECCCCCCCcCCCHHHHHHHHHHHHHHHHHH
Confidence 899999977 589999999997 222211112457778999999999999999999999999999999999999999
Q ss_pred HHHhCC-CcEEEEecCCCcccHHHHHHHHHHhCCCCCCcEEEe-eeccHHHHHHHHHHHcCCCCcceeee-EEcccCCCe
Q 022947 150 IAKCCP-KAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVDVP-VVGGHAGVT 226 (289)
Q Consensus 150 i~~~~p-~aiviv~tNPvd~~t~~~~~~~~~~~~~~~~kviG~-t~lds~R~~~~lA~~l~v~~~~V~~~-V~G~hg~~~ 226 (289)
|++++| ++++|++|||+|+|||++. ++.+++|++ +||+ |.|||+||+++||++++++|++|+.+ ||||||+ +
T Consensus 96 i~~~a~~~~ivivvtNPvDv~t~v~~---~~~sg~p~~-vig~gt~LDsaR~r~~la~~l~v~~~~V~~~~V~GeHG~-s 170 (313)
T TIGR01756 96 LSEYAKPTVKVLVIGNPVNTNCLVAM---LHAPKLSAE-NFSSLCMLDHNRAVSRIASKLKVPVDHIYHVVVWGNHAE-S 170 (313)
T ss_pred HHhhCCCCeEEEEeCCchHHHHHHHH---HHcCCCCHH-HEEecccHHHHHHHHHHHHHhCcChhheeeeEEEECCCC-c
Confidence 999995 5889999999999997652 478999999 9999 89999999999999999999999755 9999998 9
Q ss_pred eeeecccccC--CCC-------CChh-hHHHHHHHHHhhhHHHhhhcCCCCcchHHHH-HHHHHHHHHHhcC
Q 022947 227 ILPLLSQVKP--SCS-------LTPT-EIDYLTDRIQNGGTEVVEAKTGAGSATLSMC-RHMLLPSLPMLVS 287 (289)
Q Consensus 227 ~vp~~S~~~v--~~~-------~~~~-~~~~i~~~v~~~g~~i~~~k~g~g~t~~s~A-~a~~~~~~ail~~ 287 (289)
|||+||++++ ++. ++++ .+++|.++++++|++|++.| |+|+|+++ .++++++++|++|
T Consensus 171 ~vp~~S~~~V~~~G~~~~~~~~~~~~~~~~~i~~~v~~~g~~Ii~~k---g~t~~~~~a~ai~~iv~ail~~ 239 (313)
T TIGR01756 171 MVADLTHAEFTKNGKHQKVFDELCRDYPEPDFFEVIAQRAWKILEMR---GFTSAASPVKASLQHMKAWLFG 239 (313)
T ss_pred eeecccccEEecCCeehhHhhhcCcHhHHHHHHHHHHHHHHHHHhCc---CCcchHHHHHHHHHHHHHHhcC
Confidence 9999999999 541 2332 36899999999999999954 78999988 6999999999994
No 34
>cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family. Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains
Probab=100.00 E-value=3.9e-41 Score=306.32 Aligned_cols=197 Identities=32% Similarity=0.487 Sum_probs=177.6
Q ss_pred EEEEcCCCccHHHHHHHHHhCC--CccEEEEEeCCC--chhHHhhhhcccCCc-eEEEEecCCCHHhhhCCCCEEEEcCC
Q 022947 49 VAVLGAAGGIGQPLAMLMKINP--LVSVLHLYDVVN--TPGVTADISHMDTNA-VVRGFLGQQQLEDALTGMDIVIIPAG 123 (289)
Q Consensus 49 I~IIGaaG~VGs~la~~L~~~g--~~~eI~LvD~~~--~~g~~~DL~~~~~~~-~v~~~~~t~d~~eal~~aDiVIitag 123 (289)
|+||||+|.+|+++++.|+..+ ...||+|+|+++ +++.++|+.|..... ..+.. .++|++++++|||+||+++|
T Consensus 1 I~IIGagG~vG~~ia~~l~~~~~~~~~el~L~D~~~~~l~~~~~dl~~~~~~~~~~~i~-~~~d~~~~~~~aDiVv~t~~ 79 (263)
T cd00650 1 IAVIGAGGNVGPALAFGLADGSVLLAIELVLYDIDEEKLKGVAMDLQDAVEPLADIKVS-ITDDPYEAFKDADVVIITAG 79 (263)
T ss_pred CEEECCCChHHHHHHHHHHhCCCCcceEEEEEeCCcccchHHHHHHHHhhhhccCcEEE-ECCchHHHhCCCCEEEECCC
Confidence 6899988999999999999999 778999999987 678899999876432 23332 35677799999999999999
Q ss_pred CCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecCCCcccHHHHHHHHHHhCCCCCCcEEEeeeccHHHHHHHH
Q 022947 124 VPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGVTMLDVVRANTFV 203 (289)
Q Consensus 124 ~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~aiviv~tNPvd~~t~~~~~~~~~~~~~~~~kviG~t~lds~R~~~~l 203 (289)
.++++|++|.+++.+|++++++++++|+++||++|++++|||+|++|+++ ++.+++|++|+||+|.+|++|+++++
T Consensus 80 ~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~~i~~tNP~d~~t~~~----~~~sg~~~~kviG~~~ld~~r~~~~l 155 (263)
T cd00650 80 VGRKPGMGRLDLLKRNVPIVKEIGDNIEKYSPDAWIIVVSNPVDIITYLV----WRYSGLPKEKVIGLGTLDPIRFRRIL 155 (263)
T ss_pred CCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHHH----HHHhCCCchhEEEeecchHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999765 56679999999999669999999999
Q ss_pred HHHcCCCCcceeeeEEcccCCCeeeeecccccCCCCCChhhHHHHHHHHHhhhHHHhhhcCCCCcchHHHHHHHHHHHHH
Q 022947 204 AEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEAKTGAGSATLSMCRHMLLPSLP 283 (289)
Q Consensus 204 A~~l~v~~~~V~~~V~G~hg~~~~vp~~S~~~v~~~~~~~~~~~i~~~v~~~g~~i~~~k~g~g~t~~s~A~a~~~~~~a 283 (289)
|+++++++++|+++|||+||+ +++|+||+++ +|.++++++++
T Consensus 156 a~~l~v~~~~v~~~v~G~hg~-~~~~~~s~~~-------------------------------------~a~~~~~ii~a 197 (263)
T cd00650 156 AEKLGVDPDDVKVYILGEHGG-SQVPDWSTVR-------------------------------------IATSIADLIRS 197 (263)
T ss_pred HHHhCCCccceEEEEEEcCCC-ceEeccccch-------------------------------------HHHHHHHHHHH
Confidence 999999999999999999998 8999999864 78889999999
Q ss_pred HhcCC
Q 022947 284 MLVSE 288 (289)
Q Consensus 284 il~~~ 288 (289)
|++|+
T Consensus 198 i~~~~ 202 (263)
T cd00650 198 LLNDE 202 (263)
T ss_pred HHcCC
Confidence 99886
No 35
>KOG1496 consensus Malate dehydrogenase [Energy production and conversion]
Probab=100.00 E-value=2.3e-36 Score=264.82 Aligned_cols=237 Identities=24% Similarity=0.361 Sum_probs=208.3
Q ss_pred CCCCEEEEEcCCCccHHHHHHHHHhCCC-----ccEEEEEeCCC----chhHHhhhhcccCCceEEEEecCCCHHhhhCC
Q 022947 44 SPGFKVAVLGAAGGIGQPLAMLMKINPL-----VSVLHLYDVVN----TPGVTADISHMDTNAVVRGFLGQQQLEDALTG 114 (289)
Q Consensus 44 ~~~~KI~IIGaaG~VGs~la~~L~~~g~-----~~eI~LvD~~~----~~g~~~DL~~~~~~~~v~~~~~t~d~~eal~~ 114 (289)
+++.+|.|+||+|++|+++.+.++.... ...++|+|+.+ .+|..++|+++. ++.++....++|..++|+|
T Consensus 2 ~epirVlVtGAAGqI~ysll~~ia~G~vfG~dQPiiL~lLdi~~~~~~LegV~mELqD~a-~PlL~~Vvattd~~~afkd 80 (332)
T KOG1496|consen 2 KEPIRVLVTGAAGQIGYSLLPMIARGIVFGKDQPIILHLLDIPPMMSVLEGVKMELQDCA-LPLLKGVVATTDEVEAFKD 80 (332)
T ss_pred CCceEEEeecccchhhHHHHHHHcCceeecCCCceEEEeeCCchHHHHHHHHHHHHHhhh-hhHHHhhhcccChhhhhcc
Confidence 3567999999999999999999886421 23799999987 589999999997 4666554456788899999
Q ss_pred CCEEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhC-CCcEEEEecCCCcccHHHHHHHHHHhCCCCCCcEEEeee
Q 022947 115 MDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCC-PKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGVTM 193 (289)
Q Consensus 115 aDiVIitag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~-p~aiviv~tNPvd~~t~~~~~~~~~~~~~~~~kviG~t~ 193 (289)
.|+.|+.+++||++||+|.|++..|++|+++.+..+++|+ |+++|+++.||+|..+.++. +.+..+|.+++-.+|.
T Consensus 81 v~~ailvGa~PR~eGMERkDll~~NvkIfk~Qg~AL~k~A~~~~KVlVVgNPaNTNali~~---k~ApsIP~kNfs~lTR 157 (332)
T KOG1496|consen 81 VDVAILVGAMPRREGMERKDLLSANVKIFKSQGAALEKYAKPNVKVLVVGNPANTNALILK---KFAPSIPEKNFSALTR 157 (332)
T ss_pred CcEEEEeccccCcccchhhhHHhhcceeehhhhHHHHHhcCCCceEEEecCccccchhHHh---hhCCCCchhcchhhhh
Confidence 9999999999999999999999999999999999999998 99999999999999998765 4467899999999999
Q ss_pred ccHHHHHHHHHHHcCCCCcce-eeeEEcccCCCeeeeecccccCCC---------CCChhhH--HHHHHHHHhhhHHHhh
Q 022947 194 LDVVRANTFVAEVLGLDPREV-DVPVVGGHAGVTILPLLSQVKPSC---------SLTPTEI--DYLTDRIQNGGTEVVE 261 (289)
Q Consensus 194 lds~R~~~~lA~~l~v~~~~V-~~~V~G~hg~~~~vp~~S~~~v~~---------~~~~~~~--~~i~~~v~~~g~~i~~ 261 (289)
||.+|...+||.++|++.++| ++.+||+|+. ||+|+..++++.. .+++..| .++++.|+++|..|++
T Consensus 158 LDhNRA~~QlA~klgv~~~~VkNviIWGNHSs-TQyPD~~hA~V~~~~~~~~v~e~v~d~~wL~g~Fi~tVQkRGaavi~ 236 (332)
T KOG1496|consen 158 LDHNRALAQLALKLGVPVSDVKNVIIWGNHSS-TQYPDVNHATVNTNGGEKPVKEAVKDDAWLQGEFIETVQKRGAAVIK 236 (332)
T ss_pred hchhhHHHHHHHhhCCchhhcceeEEeccccc-ccCCCccceeeeccCCcccHHHHhccchhhccchhhHHHhcchHhhh
Confidence 999999999999999999999 5899999997 9999999999852 1445555 6999999999999999
Q ss_pred hcCCCCcchHHHHHHHHHHHHHHhcC
Q 022947 262 AKTGAGSATLSMCRHMLLPSLPMLVS 287 (289)
Q Consensus 262 ~k~g~g~t~~s~A~a~~~~~~ail~~ 287 (289)
.+ |-|+.+|.|.++|+.++.|++-
T Consensus 237 ar--k~SSA~SaA~aacDhi~dw~~g 260 (332)
T KOG1496|consen 237 AR--KLSSAMSAAKAACDHIRDWWFG 260 (332)
T ss_pred hh--hhhhhhhHHHhHhhhhhheecC
Confidence 75 6789999999999999998753
No 36
>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....
Probab=100.00 E-value=7.6e-34 Score=235.90 Aligned_cols=139 Identities=39% Similarity=0.620 Sum_probs=123.5
Q ss_pred CEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCC--chhHHhhhhcccCCceEEEEecCCCHHhhhCCCCEEEEcCCC
Q 022947 47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGV 124 (289)
Q Consensus 47 ~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~--~~g~~~DL~~~~~~~~v~~~~~t~d~~eal~~aDiVIitag~ 124 (289)
|||+||||+|.||+++++.|++.++.+||+|+|+++ ++|+++||+|..............+ +++++|||+||+++|.
T Consensus 1 ~KV~IiGa~G~VG~~~a~~l~~~~l~~ei~L~D~~~~~~~g~a~Dl~~~~~~~~~~~~i~~~~-~~~~~~aDivvitag~ 79 (141)
T PF00056_consen 1 MKVAIIGAAGNVGSTLALLLAQQGLADEIVLIDINEDKAEGEALDLSHASAPLPSPVRITSGD-YEALKDADIVVITAGV 79 (141)
T ss_dssp SEEEEESTTSHHHHHHHHHHHHTTTSSEEEEEESSHHHHHHHHHHHHHHHHGSTEEEEEEESS-GGGGTTESEEEETTST
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCceEEeccCcccceeeehhhhhhhhhccccccccccc-ccccccccEEEEeccc
Confidence 699999999999999999999999999999999997 7899999999875432222222345 4899999999999999
Q ss_pred CCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecCCCcccHHHHHHHHHHhCCCCCCcEEE
Q 022947 125 PRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLG 190 (289)
Q Consensus 125 ~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~aiviv~tNPvd~~t~~~~~~~~~~~~~~~~kviG 190 (289)
|+++|++|.+++..|+++++++++++++++|+++++++|||+|+||++ +++.++|||+|+||
T Consensus 80 ~~~~g~sR~~ll~~N~~i~~~~~~~i~~~~p~~~vivvtNPvd~~t~~----~~~~s~~~~~kviG 141 (141)
T PF00056_consen 80 PRKPGMSRLDLLEANAKIVKEIAKKIAKYAPDAIVIVVTNPVDVMTYV----AQKYSGFPPNKVIG 141 (141)
T ss_dssp SSSTTSSHHHHHHHHHHHHHHHHHHHHHHSTTSEEEE-SSSHHHHHHH----HHHHHTSSGGGEEE
T ss_pred cccccccHHHHHHHhHhHHHHHHHHHHHhCCccEEEEeCCcHHHHHHH----HHHhhCcCcccCcC
Confidence 999999999999999999999999999999999999999999999865 46778999999998
No 37
>PRK15076 alpha-galactosidase; Provisional
Probab=99.92 E-value=3.2e-25 Score=214.61 Aligned_cols=166 Identities=20% Similarity=0.252 Sum_probs=131.0
Q ss_pred CCEEEEEcCCCccHHHHHH--HHH-hCCCc-cEEEEEeCCC--ch-hHHhhhhcccC--CceEEEEecCCCHHhhhCCCC
Q 022947 46 GFKVAVLGAAGGIGQPLAM--LMK-INPLV-SVLHLYDVVN--TP-GVTADISHMDT--NAVVRGFLGQQQLEDALTGMD 116 (289)
Q Consensus 46 ~~KI~IIGaaG~VGs~la~--~L~-~~g~~-~eI~LvD~~~--~~-g~~~DL~~~~~--~~~v~~~~~t~d~~eal~~aD 116 (289)
++||+|||| |.+|.+.++ .++ ..++. .||+|+|+++ .+ +..+ +.+... ....+.. .++|++++++|||
T Consensus 1 ~~KIaIIGa-Gsvg~~~~~~~~i~~~~~l~~~evvLvDid~er~~~~~~l-~~~~~~~~~~~~~i~-~ttD~~eal~dAD 77 (431)
T PRK15076 1 MPKITFIGA-GSTVFTKNLLGDILSVPALRDAEIALMDIDPERLEESEIV-ARKLAESLGASAKIT-ATTDRREALQGAD 77 (431)
T ss_pred CcEEEEECC-CHHHhHHHHHHHHhhCccCCCCEEEEECCCHHHHHHHHHH-HHHHHHhcCCCeEEE-EECCHHHHhCCCC
Confidence 369999999 999998876 555 34454 4999999988 22 3333 333221 2233332 3568889999999
Q ss_pred EEEEcCCCC-CCCC--------------CchhhH--------HHhhHHHHHHHHHHHHHhCCCcEEEEecCCCcccHHHH
Q 022947 117 IVIIPAGVP-RKPG--------------MTRDDL--------FNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIA 173 (289)
Q Consensus 117 iVIitag~~-~~~g--------------~~r~d~--------~~~N~~i~~~i~~~i~~~~p~aiviv~tNPvd~~t~~~ 173 (289)
+||++++++ .+++ ++|.|. +.+|+++++++++.|+++||+||+|++|||+|++|+.+
T Consensus 78 fVv~ti~vg~~~~~~~~De~Iplk~G~~~~r~et~G~GG~~~~~r~i~~i~~i~~~i~~~~p~a~iin~tNP~divt~~~ 157 (431)
T PRK15076 78 YVINAIQVGGYEPCTVTDFEIPKKYGLRQTIGDTLGIGGIMRALRTIPVLLDICEDMEEVCPDALLLNYVNPMAMNTWAM 157 (431)
T ss_pred EEeEeeeeCCcchhhhhhhhhHHHcCCeeecccCcCccchhhhhhhHHHHHHHHHHHHHHCCCeEEEEcCChHHHHHHHH
Confidence 999999887 4444 556677 89999999999999999999999999999999999653
Q ss_pred HHHHHHhCCCCCCcEEEee--eccHHHHHHHHHHHcCCCCcceeeeEEcccCC
Q 022947 174 AEVFKKVGTYDPKRLLGVT--MLDVVRANTFVAEVLGLDPREVDVPVVGGHAG 224 (289)
Q Consensus 174 ~~~~~~~~~~~~~kviG~t--~lds~R~~~~lA~~l~v~~~~V~~~V~G~hg~ 224 (289)
+ ++|+.||||+| .+|+. +.+|+.+|+++++|++++.|-+|-
T Consensus 158 ----~---~~~~~rviG~c~~~~~~~---~~ia~~l~v~~~~v~~~~~GlNH~ 200 (431)
T PRK15076 158 ----N---RYPGIKTVGLCHSVQGTA---EQLARDLGVPPEELRYRCAGINHM 200 (431)
T ss_pred ----h---cCCCCCEEEECCCHHHHH---HHHHHHhCCCHHHeEEEEEeecch
Confidence 3 68889999997 57765 789999999999999999997665
No 38
>cd05197 GH4_glycoside_hydrolases Glycoside Hydrases Family 4. Glycoside hydrolases cleave glycosidic bonds to release smaller sugars from oligo- or polysaccharides. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by GH4 glycoside hydrolases. Other organisms (such as archaea and Thermotoga maritima) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. GH4 family members include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. They require two cofactors, NAD+ and a divalent metal (Mn2+, Ni2+, Mg2+), for activity. Some also require reducing conditions. GH4 glycoside hydrolases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families in
Probab=99.92 E-value=1.4e-24 Score=209.71 Aligned_cols=176 Identities=23% Similarity=0.273 Sum_probs=130.6
Q ss_pred CEEEEEcCCCccHH-HHHHHHHhCC--C-ccEEEEEeCCCc-hh----HHhhhhcccCCceEEEEecCCCHHhhhCCCCE
Q 022947 47 FKVAVLGAAGGIGQ-PLAMLMKINP--L-VSVLHLYDVVNT-PG----VTADISHMDTNAVVRGFLGQQQLEDALTGMDI 117 (289)
Q Consensus 47 ~KI~IIGaaG~VGs-~la~~L~~~g--~-~~eI~LvD~~~~-~g----~~~DL~~~~~~~~v~~~~~t~d~~eal~~aDi 117 (289)
+||+|||| |+.=+ .+...|+... + .+||+|+|+++. .. .+..+.... ...++.. .|+|+++|++|||+
T Consensus 1 ~KI~iIGg-GS~~tp~li~~l~~~~~~l~~~ei~L~Did~~Rl~~v~~l~~~~~~~~-g~~~~v~-~ttD~~~Al~gADf 77 (425)
T cd05197 1 VKIAIIGG-GSSFTPELVSGLLKTPEELPISEVTLYDIDEERLDIILTIAKRYVEEV-GADIKFE-KTMDLEDAIIDADF 77 (425)
T ss_pred CEEEEECC-chHhHHHHHHHHHcChhhCCCCEEEEEcCCHHHHHHHHHHHHHHHHhh-CCCeEEE-EeCCHHHHhCCCCE
Confidence 69999999 65411 1223444333 2 489999999982 11 122222222 2344443 36799999999999
Q ss_pred EEEcCCC------------CCCCC---Cc-----hhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecCCCcccHHHHHHHH
Q 022947 118 VIIPAGV------------PRKPG---MT-----RDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVF 177 (289)
Q Consensus 118 VIitag~------------~~~~g---~~-----r~d~~~~N~~i~~~i~~~i~~~~p~aiviv~tNPvd~~t~~~~~~~ 177 (289)
||.+.-+ |.+.| ++ ......+|+++++++++.|+++||+||+|++|||+|+||+++
T Consensus 78 Vi~~irvGg~~~r~~De~Iplk~G~~gqeT~G~GG~~~alrni~ii~~i~~~i~~~~P~a~lin~TNP~di~t~a~---- 153 (425)
T cd05197 78 VINQFRVGGLTYREKDEQIPLKYGVIGQETVGPGGTFSGLRQIPYVLDIARKXEKLSPDAWYLNFTNPAGEVTEAV---- 153 (425)
T ss_pred EEEeeecCChHHHHHHHhHHHHcCcccccccCcchhhhhhhhHHHHHHHHHHHHHhCCCcEEEecCChHHHHHHHH----
Confidence 9998532 22332 11 234567999999999999999999999999999999999765
Q ss_pred HHhCCCCCCcEEEeeeccHHHHHHHHHHHcCCCCcceeeeEEc-ccCCCeeeeecccccCC
Q 022947 178 KKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVG-GHAGVTILPLLSQVKPS 237 (289)
Q Consensus 178 ~~~~~~~~~kviG~t~lds~R~~~~lA~~l~v~~~~V~~~V~G-~hg~~~~vp~~S~~~v~ 237 (289)
++. +|+.||||+|.. +.|+++.+|+.+|+++++|+++|+| +|| |+||.+++.
T Consensus 154 ~~~--~p~~rviG~c~~-~~r~~~~ia~~lgv~~~~v~~~v~GlnHg-----~~~s~~~~~ 206 (425)
T cd05197 154 RRY--VPPEKAVGLCNV-PIGVMEIVAKLLGESEEKVDWQYAGLNHG-----IWLNRVRYN 206 (425)
T ss_pred HHh--CCCCcEEEECCC-HHHHHHHHHHHhCCCHHHeEEEEEeccCe-----EeeEeEEEC
Confidence 444 378999999877 9999999999999999999999999 997 678877653
No 39
>cd05296 GH4_P_beta_glucosidase Glycoside Hydrolases Family 4; Phospho-beta-glucosidase. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases such as the phospho-beta-glucosidases. Other organisms (such as archaea and Thermotoga maritima ) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. The 6-phospho-beta-glucosidase from Thermotoga maritima hydrolylzes cellobiose 6-phosphate (6P) into glucose-6P and glucose, in an NAD+ and Mn2+ dependent fashion. The Escherichia coli 6-phospho-beta-glucosidase (also called celF) hydrolyzes a variety of phospho-beta-glucosides including cellobiose-6P, salicin-6P, arbutin-6P, and gentobiose-6P. Phospho-beta-glucosidases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein
Probab=99.91 E-value=3.8e-24 Score=206.30 Aligned_cols=167 Identities=19% Similarity=0.269 Sum_probs=126.7
Q ss_pred CEEEEEcCCCccHHHH-HHHHHhC-C--CccEEEEEeCC-Cc-h----hHHhhhhcccCCceEEEEecCCCHHhhhCCCC
Q 022947 47 FKVAVLGAAGGIGQPL-AMLMKIN-P--LVSVLHLYDVV-NT-P----GVTADISHMDTNAVVRGFLGQQQLEDALTGMD 116 (289)
Q Consensus 47 ~KI~IIGaaG~VGs~l-a~~L~~~-g--~~~eI~LvD~~-~~-~----g~~~DL~~~~~~~~v~~~~~t~d~~eal~~aD 116 (289)
|||+|||| |++.... ...|+.. . ..+||+|+|++ +. . ..+.++.... ...++.. .|+|+++|++|||
T Consensus 1 ~KI~iIGa-GS~~tp~li~~l~~~~~~l~~~ei~L~Did~~~rl~~v~~~~~~~~~~~-~~~~~v~-~t~d~~~al~gad 77 (419)
T cd05296 1 MKLTIIGG-GSSYTPELIEGLIRRYEELPVTELVLVDIDEEEKLEIVGALAKRMVKKA-GLPIKVH-LTTDRREALEGAD 77 (419)
T ss_pred CEEEEECC-chHhHHHHHHHHHhccccCCCCEEEEecCChHHHHHHHHHHHHHHHHhh-CCCeEEE-EeCCHHHHhCCCC
Confidence 69999999 7653322 2344442 2 35899999999 51 1 1122222221 2344433 3678999999999
Q ss_pred EEEEcCCCCCCCCCchhh--------------------HHHhhHHHHHHHHHHHHHhCCCcEEEEecCCCcccHHHHHHH
Q 022947 117 IVIIPAGVPRKPGMTRDD--------------------LFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEV 176 (289)
Q Consensus 117 iVIitag~~~~~g~~r~d--------------------~~~~N~~i~~~i~~~i~~~~p~aiviv~tNPvd~~t~~~~~~ 176 (289)
+||+++++++.++.++.+ ...+|+++++++++.|+++||+||+|++|||+|++|+++
T Consensus 78 fVi~~~~vg~~~~r~~de~i~~~~Gi~gqET~G~GG~~~a~rni~ii~~i~~~i~~~~Pda~lin~TNP~~ivt~a~--- 154 (419)
T cd05296 78 FVFTQIRVGGLEARALDERIPLKHGVIGQETTGAGGFAKALRTIPVILDIAEDVEELAPDAWLINFTNPAGIVTEAV--- 154 (419)
T ss_pred EEEEEEeeCCcchhhhhhhhHHHcCCccccCCCcchHHHhhhhHHHHHHHHHHHHHHCCCeEEEEecCHHHHHHHHH---
Confidence 999998877666555444 367899999999999999999999999999999998654
Q ss_pred HHHhCCCCCCcEEEeeeccHHHHHHHHHHHcCCCCcceeeeEEc-ccCC
Q 022947 177 FKKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVG-GHAG 224 (289)
Q Consensus 177 ~~~~~~~~~~kviG~t~lds~R~~~~lA~~l~v~~~~V~~~V~G-~hg~ 224 (289)
++.+ +.||||+|.. +.|+++.+|+.+|+++++|+++|+| +|-.
T Consensus 155 -~k~~---~~rviGlc~~-~~r~~~~ia~~lg~~~~~v~~~v~GlNH~~ 198 (419)
T cd05296 155 -LRHT---GDRVIGLCNV-PIGLQRRIAELLGVDPEDVFIDYAGLNHLG 198 (419)
T ss_pred -HHhc---cCCEEeeCCc-HHHHHHHHHHHhCCCHHHceEEEEecccce
Confidence 5544 7899999977 4899999999999999999999999 7643
No 40
>cd05297 GH4_alpha_glucosidase_galactosidase Glycoside Hydrolases Family 4; Alpha-glucosidases and alpha-galactosidases. linked to 3D####ucture
Probab=99.87 E-value=2.3e-21 Score=187.69 Aligned_cols=168 Identities=21% Similarity=0.195 Sum_probs=129.6
Q ss_pred CEEEEEcCCCccHHHHHH--HHHhC-CCc-cEEEEEeCCC--chhHHhhhhccc--CCceEEEEecCCCHHhhhCCCCEE
Q 022947 47 FKVAVLGAAGGIGQPLAM--LMKIN-PLV-SVLHLYDVVN--TPGVTADISHMD--TNAVVRGFLGQQQLEDALTGMDIV 118 (289)
Q Consensus 47 ~KI~IIGaaG~VGs~la~--~L~~~-g~~-~eI~LvD~~~--~~g~~~DL~~~~--~~~~v~~~~~t~d~~eal~~aDiV 118 (289)
+||+|||| |.+|++.+. .++.. .+. .+|+|+|+++ .+....++.+.. .....+.. .++|++++++|||+|
T Consensus 1 ~KIaIIGa-Gs~G~a~a~~~~i~~~~~~~g~eV~L~Did~e~l~~~~~~~~~~~~~~~~~~~I~-~ttD~~eal~~AD~V 78 (423)
T cd05297 1 IKIAFIGA-GSVVFTKNLVGDLLKTPELSGSTIALMDIDEERLETVEILAKKIVEELGAPLKIE-ATTDRREALDGADFV 78 (423)
T ss_pred CeEEEECC-ChHHhHHHHHHHHhcCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHhcCCCeEEE-EeCCHHHHhcCCCEE
Confidence 48999998 999999876 45433 332 3999999988 333334443321 11222322 356888999999999
Q ss_pred EEcCCCCCCCCCch----------------------hhHHHhhHHHHHHHHHHHHHhCCCcEEEEecCCCcccHHHHHHH
Q 022947 119 IIPAGVPRKPGMTR----------------------DDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEV 176 (289)
Q Consensus 119 Iitag~~~~~g~~r----------------------~d~~~~N~~i~~~i~~~i~~~~p~aiviv~tNPvd~~t~~~~~~ 176 (289)
|++++.+..++.++ .....+|++++.++++.++++||++|++++|||+++||+++
T Consensus 79 i~ai~~~~~~~~~~de~i~~K~g~~~~~~~t~g~ggi~~~~~s~~~i~~ia~~i~~~~p~a~~i~~tNPv~i~t~~~--- 155 (423)
T cd05297 79 INTIQVGGHEYTETDFEIPEKYGYYQTVGDTSGPGGIFRALRTIPVLLDIARDIEELCPDAWLLNYANPMAELTWAL--- 155 (423)
T ss_pred EEeeEecCccchhhhhhhHHHcCeeeeccCCCcHHHHHHHHhhHHHHHHHHHHHHHHCCCCEEEEcCChHHHHHHHH---
Confidence 99988665554443 34567899999999999999999999999999999999654
Q ss_pred HHHhCCCCCCcEEEeeeccHHHHHHHHHHHcCCCCcceeeeEEcccCC
Q 022947 177 FKKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVGGHAG 224 (289)
Q Consensus 177 ~~~~~~~~~~kviG~t~lds~R~~~~lA~~l~v~~~~V~~~V~G~hg~ 224 (289)
++.++ .|+||+|.- +.|+++.+|+.+++++++|+++++|-+|-
T Consensus 156 -~k~~~---~rviG~c~~-~~~~~~~~a~~l~~~~~~v~~~~~GlNH~ 198 (423)
T cd05297 156 -NRYTP---IKTVGLCHG-VQGTAEQLAKLLGEPPEEVDYQVAGINHM 198 (423)
T ss_pred -HHhCC---CCEEEECCc-HHHHHHHHHHHhCCCHHHeEEEEEeeccH
Confidence 55554 799999865 88899999999999999999999996654
No 41
>PF02866 Ldh_1_C: lactate/malate dehydrogenase, alpha/beta C-terminal domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR022383 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the C-terminal, and is thought to be an is an unusual alpha+beta fold.; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0055114 oxidation-reduction process; PDB: 4MDH_B 5MDH_A 1GV0_A 1GUZ_D 2EWD_B 2FRM_D 2FNZ_B 2FN7_B 2FM3_A 1LTH_T ....
Probab=99.85 E-value=1.8e-21 Score=166.92 Aligned_cols=94 Identities=34% Similarity=0.514 Sum_probs=87.1
Q ss_pred eeccHHHHHHHHHHHcCCCCcceeeeEEcccCCCeeeeecccccCCC-----------CCChhhHHHHHHHHHhhhHHHh
Q 022947 192 TMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSC-----------SLTPTEIDYLTDRIQNGGTEVV 260 (289)
Q Consensus 192 t~lds~R~~~~lA~~l~v~~~~V~~~V~G~hg~~~~vp~~S~~~v~~-----------~~~~~~~~~i~~~v~~~g~~i~ 260 (289)
|.||++||+++||+++|++|++++++||||||+ ++||+||++++.+ .++++++++|.++++++|++|+
T Consensus 1 T~LDs~R~~~~la~~l~v~~~~v~~~ViGeHg~-s~~~~~S~~~v~g~pl~~~~~~~~~~~~~~~~~l~~~v~~~g~~ii 79 (174)
T PF02866_consen 1 TMLDSARFRYFLAEKLGVNPSSVNAYVIGEHGD-SQVPDWSHAKVGGVPLLSYAKPSGKLSEEELEELTERVRKAGYEII 79 (174)
T ss_dssp THHHHHHHHHHHHHHHTSGGGGEEEEEEBSSST-TEEEEGGGEEETTEEHHHHHHTTTSSSHHHHHHHHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHCcCccceEEEEEecCCc-ceeeeeecccccccccccccccccchhHHhhhccccccEeccceee
Confidence 679999999999999999999999999999999 9999999999852 3566778999999999999999
Q ss_pred hhcCCCCcchHHHHHHHHHHHHHHhcCC
Q 022947 261 EAKTGAGSATLSMCRHMLLPSLPMLVSE 288 (289)
Q Consensus 261 ~~k~g~g~t~~s~A~a~~~~~~ail~~~ 288 (289)
+.|+ |+++||+|.|+++++++|++|+
T Consensus 80 ~~k~--g~t~~s~A~a~~~~v~ail~~~ 105 (174)
T PF02866_consen 80 KAKG--GSTSYSIAAAAARIVEAILKDE 105 (174)
T ss_dssp HHHS--SSCHHHHHHHHHHHHHHHHTTH
T ss_pred eecc--ccCcCCHHHHHHHHHHHHhhcc
Confidence 9883 8899999999999999999985
No 42
>cd05298 GH4_GlvA_pagL_like Glycoside Hydrolases Family 4; GlvA- and pagL-like glycosidases. Bacillus subtilis GlvA and Clostridium acetobutylicum pagL are 6-phospho-alpha-glucosidase, catalyzing the hydrolysis of alpha-glucopyranoside bonds to release glucose from oligosaccharides. The substrate specificities of other members of this subgroup are unknown. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP_PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases, which include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. Members of this subfamily are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductas
Probab=99.84 E-value=3.5e-20 Score=179.56 Aligned_cols=168 Identities=20% Similarity=0.254 Sum_probs=121.9
Q ss_pred CEEEEEcCCCccHH-HHHHHHHhC--CC-ccEEEEEeCCC-chh----HHhhhhcccCCceEEEEecCCCHHhhhCCCCE
Q 022947 47 FKVAVLGAAGGIGQ-PLAMLMKIN--PL-VSVLHLYDVVN-TPG----VTADISHMDTNAVVRGFLGQQQLEDALTGMDI 117 (289)
Q Consensus 47 ~KI~IIGaaG~VGs-~la~~L~~~--g~-~~eI~LvD~~~-~~g----~~~DL~~~~~~~~v~~~~~t~d~~eal~~aDi 117 (289)
|||+|||| |++=+ .+...|++. .+ .+||+|+|+++ ... .+..+.... ...+++. .|+|+++|++|||+
T Consensus 1 ~KI~iIGa-GS~~tp~li~~l~~~~~~l~~~ei~L~DId~~rl~~v~~l~~~~~~~~-g~~~~v~-~Ttdr~eAl~gADf 77 (437)
T cd05298 1 FKIVIAGG-GSTYTPGIVKSLLDRKEDFPLRELVLYDIDAERQEKVAEAVKILFKEN-YPEIKFV-YTTDPEEAFTDADF 77 (437)
T ss_pred CeEEEECC-cHHHHHHHHHHHHhCcccCCCCEEEEECCCHHHHHHHHHHHHHHHHhh-CCCeEEE-EECCHHHHhCCCCE
Confidence 69999999 65411 122344444 23 48999999998 211 122222221 2344443 36799999999999
Q ss_pred EEEcCCC------------CCCCC---Cc-----hhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecCCCcccHHHHHHHH
Q 022947 118 VIIPAGV------------PRKPG---MT-----RDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVF 177 (289)
Q Consensus 118 VIitag~------------~~~~g---~~-----r~d~~~~N~~i~~~i~~~i~~~~p~aiviv~tNPvd~~t~~~~~~~ 177 (289)
||.+..+ |.+.| ++ ..-...+|+++++++++.|+++||+||+|++|||+|++|+.+
T Consensus 78 Vi~~irvGg~~~r~~De~Ip~kyGi~gqET~G~GG~~~alRtip~~~~i~~~i~~~~pda~lin~tNP~~~vt~~~---- 153 (437)
T cd05298 78 VFAQIRVGGYAMREQDEKIPLKHGVVGQETCGPGGFAYGLRSIGPMIELIDDIEKYSPDAWILNYSNPAAIVAEAL---- 153 (437)
T ss_pred EEEEeeeCCchHHHHHHhHHHHcCcceecCccHHHHHHHHhhHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHHH----
Confidence 9998532 22222 11 234568999999999999999999999999999999999654
Q ss_pred HHhCCCCCCcEEEeeeccHHHHHHHHHHHcCCCCcceeeeEEcccCC
Q 022947 178 KKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVGGHAG 224 (289)
Q Consensus 178 ~~~~~~~~~kviG~t~lds~R~~~~lA~~l~v~~~~V~~~V~G~hg~ 224 (289)
++. +|+.||||+|+--. .++..+|+.||+++++|+..+.|-+|-
T Consensus 154 ~~~--~~~~kviGlC~~~~-~~~~~la~~lg~~~~~v~~~~~GlNH~ 197 (437)
T cd05298 154 RRL--FPNARILNICDMPI-AIMDSMAAILGLDRKDLEPDYFGLNHF 197 (437)
T ss_pred HHH--CCCCCEEEECCcHH-HHHHHHHHHhCCCHHHceEEEEeecch
Confidence 443 78899999997533 478889999999999999999996554
No 43
>PF02056 Glyco_hydro_4: Family 4 glycosyl hydrolase; InterPro: IPR001088 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 4 GH4 from CAZY comprises enzymes with several known activities; 6-phospho-beta-glucosidase (3.2.1.86 from EC); 6-phospho-alpha-glucosidase (3.2.1.122 from EC); alpha-galactosidase (3.2.1.22 from EC). 6-phospho-alpha-glucosidase requires both NAD(H) and divalent metal (Mn2+, Fe2+, Co2+, or Ni2+) for activity [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1U8X_X 1S6Y_A 3FEF_B 1VJT_A 1UP4_A 1UP6_C 1UP7_E 1OBB_A.
Probab=99.80 E-value=8e-19 Score=151.14 Aligned_cols=152 Identities=20% Similarity=0.248 Sum_probs=103.0
Q ss_pred EEEEEcCCCccHHHHHH--HHHhCC-C-ccEEEEEeCCCc-----hhHHhhhhcccCCceEEEEecCCCHHhhhCCCCEE
Q 022947 48 KVAVLGAAGGIGQPLAM--LMKINP-L-VSVLHLYDVVNT-----PGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIV 118 (289)
Q Consensus 48 KI~IIGaaG~VGs~la~--~L~~~g-~-~~eI~LvD~~~~-----~g~~~DL~~~~~~~~v~~~~~t~d~~eal~~aDiV 118 (289)
||+|||| |++-.+... .+...+ + .+||+|+|+|+. ...+..+.... ...++.. .|+|+++|++|||+|
T Consensus 1 KI~iIGa-GS~~~~~~l~~~l~~~~~l~~~ei~L~Did~~RL~~~~~~~~~~~~~~-~~~~~v~-~ttd~~eAl~gADfV 77 (183)
T PF02056_consen 1 KITIIGA-GSTYFPLLLLGDLLRTEELSGSEIVLMDIDEERLEIVERLARRMVEEA-GADLKVE-ATTDRREALEGADFV 77 (183)
T ss_dssp EEEEETT-TSCCHHHHHHHHHHCTTTSTEEEEEEE-SCHHHHHHHHHHHHHHHHHC-TTSSEEE-EESSHHHHHTTESEE
T ss_pred CEEEECC-chHhhHHHHHHHHhcCccCCCcEEEEEcCCHHHHHHHHHHHHHHHHhc-CCCeEEE-EeCCHHHHhCCCCEE
Confidence 8999999 888776542 333333 2 469999999981 11222222222 2333432 367999999999999
Q ss_pred EEcCC------------CCCCCCCc----------hhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecCCCcccHHHHHHH
Q 022947 119 IIPAG------------VPRKPGMT----------RDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEV 176 (289)
Q Consensus 119 Iitag------------~~~~~g~~----------r~d~~~~N~~i~~~i~~~i~~~~p~aiviv~tNPvd~~t~~~~~~ 176 (289)
|.+.. .|.+.|.. ......++++.+.++++.|+++|||||++++|||+..+|..+
T Consensus 78 i~~irvGg~~~r~~De~Ip~k~Gi~~~~~eT~G~GG~~~alRtipv~~~ia~~i~~~~PdAw~iNytNP~~~vt~a~--- 154 (183)
T PF02056_consen 78 INQIRVGGLEAREIDEEIPLKYGIVGTIQETVGPGGFFRALRTIPVMLDIARDIEELCPDAWLINYTNPMGIVTEAL--- 154 (183)
T ss_dssp EE---TTHHHHHHHHHHTGGCCTTT-BTTSSSTHHHHHHHHHHHHHHHHHHHHHHHHTTTSEEEE-SSSHHHHHHHH---
T ss_pred EEEeeecchHHHHHHHHHHHHhCCccccccccCccHHHHHHhhHHHHHHHHHHHHHhCCCcEEEeccChHHHHHHHH---
Confidence 99854 24444321 234567999999999999999999999999999999988543
Q ss_pred HHHhCCCCCCcEEEeeeccHHHHHHHHHHHcCC
Q 022947 177 FKKVGTYDPKRLLGVTMLDVVRANTFVAEVLGL 209 (289)
Q Consensus 177 ~~~~~~~~~~kviG~t~lds~R~~~~lA~~l~v 209 (289)
.+. +|..|++|+|+-. .-+...+|+.||+
T Consensus 155 -~r~--~~~~k~vGlCh~~-~~~~~~la~~L~~ 183 (183)
T PF02056_consen 155 -SRY--TPKIKVVGLCHGP-QGTRRQLAKLLGM 183 (183)
T ss_dssp -HHH--STTSEEEEE-SHH-HHHHHHHHHHHT-
T ss_pred -HHh--CCCCCEEEECCCH-HHHHHHHHHHhCc
Confidence 443 4568999999753 3467889998874
No 44
>COG1486 CelF Alpha-galactosidases/6-phospho-beta-glucosidases, family 4 of glycosyl hydrolases [Carbohydrate transport and metabolism]
Probab=99.80 E-value=9.4e-19 Score=167.31 Aligned_cols=170 Identities=22% Similarity=0.327 Sum_probs=122.3
Q ss_pred CCCEEEEEcCCCccHHHHHH--HHHhCC--CccEEEEEeCCC-chhHH----hhhhcccCCceEEEEecCCCHHhhhCCC
Q 022947 45 PGFKVAVLGAAGGIGQPLAM--LMKINP--LVSVLHLYDVVN-TPGVT----ADISHMDTNAVVRGFLGQQQLEDALTGM 115 (289)
Q Consensus 45 ~~~KI~IIGaaG~VGs~la~--~L~~~g--~~~eI~LvD~~~-~~g~~----~DL~~~~~~~~v~~~~~t~d~~eal~~a 115 (289)
++.||+|||| |+++.+... .|.+.+ ...||.|+|+++ ..... ..+.... ...++... ++|+++|++||
T Consensus 2 ~~~KI~iIGg-GSt~tp~~v~g~l~~~e~l~~~el~L~Did~~r~~~i~~~~~~~v~~~-g~~~kv~~-ttd~~eAl~gA 78 (442)
T COG1486 2 KKFKIVIIGG-GSTYTPKLLLGDLARTEELPVRELALYDIDEERLKIIAILAKKLVEEA-GAPVKVEA-TTDRREALEGA 78 (442)
T ss_pred CcceEEEECC-CccccHHHHHHHHhcCccCCcceEEEEeCCHHHHHHHHHHHHHHHHhh-CCCeEEEE-ecCHHHHhcCC
Confidence 4579999999 888776532 333332 357999999998 22222 2222222 23355433 67899999999
Q ss_pred CEEEEcCC------------CCCCCCCc--------hhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecCCCcccHHHHHH
Q 022947 116 DIVIIPAG------------VPRKPGMT--------RDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAE 175 (289)
Q Consensus 116 DiVIitag------------~~~~~g~~--------r~d~~~~N~~i~~~i~~~i~~~~p~aiviv~tNPvd~~t~~~~~ 175 (289)
|||+.+.- +|.|.|-. ..-...++++.+.+|++.|+++||+||++++|||+.++|+.+
T Consensus 79 dfVi~~~rvG~l~~r~~De~IplkyG~~gqET~G~GGi~~glRtIpvildi~~~m~~~~P~Aw~lNytNP~~~vTeAv-- 156 (442)
T COG1486 79 DFVITQIRVGGLEAREKDERIPLKHGLYGQETNGPGGIFYGLRTIPVILDIAKDMEKVCPNAWMLNYTNPAAIVTEAV-- 156 (442)
T ss_pred CEEEEEEeeCCcccchhhhccchhhCccccccccccHHHhhcccchHHHHHHHHHHHhCCCceEEeccChHHHHHHHH--
Confidence 99999852 23344321 123456899999999999999999999999999999998654
Q ss_pred HHHHhCCCCCCcEEEeeeccHHHHHHHHHHHcCCCC-cceeeeEEcccCC
Q 022947 176 VFKKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDP-REVDVPVVGGHAG 224 (289)
Q Consensus 176 ~~~~~~~~~~~kviG~t~lds~R~~~~lA~~l~v~~-~~V~~~V~G~hg~ 224 (289)
++. +|.-|++|+|+-. .-....+|+.||+++ ++++..+.|-+|-
T Consensus 157 --~r~--~~~~K~VGlCh~~-~g~~~~lAe~L~~~~~~~l~~~~aGlNH~ 201 (442)
T COG1486 157 --RRL--YPKIKIVGLCHGP-IGIAMELAEVLGLEPREDLRYRVAGLNHM 201 (442)
T ss_pred --HHh--CCCCcEEeeCCch-HHHHHHHHHHhCCCchhceeEEEeechhh
Confidence 443 4544999999753 346789999999975 9999999996554
No 45
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=99.05 E-value=7.2e-09 Score=98.19 Aligned_cols=115 Identities=19% Similarity=0.303 Sum_probs=85.4
Q ss_pred CEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCc------hhH-------HhhhhcccC-CceEEEEecCCCHHhhh
Q 022947 47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT------PGV-------TADISHMDT-NAVVRGFLGQQQLEDAL 112 (289)
Q Consensus 47 ~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~------~g~-------~~DL~~~~~-~~~v~~~~~t~d~~eal 112 (289)
|||+|+|. |+||...+..|++.|+ +|+++|+++. .|+ ..+|..... ..+++ .|+|+++++
T Consensus 1 MkI~viGt-GYVGLv~g~~lA~~GH--eVv~vDid~~KV~~ln~g~~PI~EpgLe~ll~~~~~~gRl~---fTtd~~~a~ 74 (414)
T COG1004 1 MKITVIGT-GYVGLVTGACLAELGH--EVVCVDIDESKVELLNKGISPIYEPGLEELLKENLASGRLR---FTTDYEEAV 74 (414)
T ss_pred CceEEECC-chHHHHHHHHHHHcCC--eEEEEeCCHHHHHHHhCCCCCCcCccHHHHHHhccccCcEE---EEcCHHHHH
Confidence 79999998 9999999999999998 9999999872 111 112222211 22355 367999999
Q ss_pred CCCCEEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEe--cCCCcccHHHH
Q 022947 113 TGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLI--SNPVNSTVPIA 173 (289)
Q Consensus 113 ~~aDiVIitag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~aiviv~--tNPvd~~t~~~ 173 (289)
+++|++|++.|+|.++.. ..++..+...++.|.++.+...++|+ |=|+.....+-
T Consensus 75 ~~adv~fIavgTP~~~dg------~aDl~~V~ava~~i~~~~~~~~vvV~KSTVPvGt~~~v~ 131 (414)
T COG1004 75 KDADVVFIAVGTPPDEDG------SADLSYVEAVAKDIGEILDGKAVVVIKSTVPVGTTEEVR 131 (414)
T ss_pred hcCCEEEEEcCCCCCCCC------CccHHHHHHHHHHHHhhcCCCeEEEEcCCCCCCchHHHH
Confidence 999999999999987633 24678899999999988866344444 77888765543
No 46
>COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]
Probab=98.98 E-value=6.3e-09 Score=96.60 Aligned_cols=140 Identities=24% Similarity=0.308 Sum_probs=98.2
Q ss_pred CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCC---chhH--Hh----hhhccc------CCceEEEEecCCCHHh
Q 022947 46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN---TPGV--TA----DISHMD------TNAVVRGFLGQQQLED 110 (289)
Q Consensus 46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~---~~g~--~~----DL~~~~------~~~~v~~~~~t~d~~e 110 (289)
.+||+|||| |.+|+.+|+.++..|+ +|+|+|+++ ..+. .. .+.... ....+..+..++++ +
T Consensus 3 i~kv~ViGa-G~MG~gIA~~~A~~G~--~V~l~D~~~~~~~~~~~~i~~~l~k~~~~g~l~~~~~~~~l~~i~~~~~~-~ 78 (307)
T COG1250 3 IKKVAVIGA-GVMGAGIAAVFALAGY--DVVLKDISPEALERALAYIEKNLEKLVEKGKLTEEEADAALARITPTTDL-A 78 (307)
T ss_pred ccEEEEEcc-cchhHHHHHHHhhcCC--ceEEEeCCHHHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHhhccccCch-h
Confidence 469999998 9999999999999778 999999986 1111 11 111110 01112223345676 5
Q ss_pred hhCCCCEEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhC-CCcEEEEecCCCcc-cHHHHHHHHHHhCCCCCCcE
Q 022947 111 ALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCC-PKAIVNLISNPVNS-TVPIAAEVFKKVGTYDPKRL 188 (289)
Q Consensus 111 al~~aDiVIitag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~-p~aiviv~tNPvd~-~t~~~~~~~~~~~~~~~~kv 188 (289)
++++||+||.++ .+|.++.+++.+++.+++ |++++ .||.+.+ ++.++ ..+ -.|+|+
T Consensus 79 ~l~~~DlVIEAv--------------~E~levK~~vf~~l~~~~~~~aIl--ASNTSsl~it~ia-----~~~-~rper~ 136 (307)
T COG1250 79 ALKDADLVIEAV--------------VEDLELKKQVFAELEALAKPDAIL--ASNTSSLSITELA-----EAL-KRPERF 136 (307)
T ss_pred HhccCCEEEEec--------------cccHHHHHHHHHHHHhhcCCCcEE--eeccCCCCHHHHH-----HHh-CCchhE
Confidence 899999999984 468999999999999998 78877 8999986 44332 223 557889
Q ss_pred EEe-------------------eeccHHHHHHHHHHHcCCCC
Q 022947 189 LGV-------------------TMLDVVRANTFVAEVLGLDP 211 (289)
Q Consensus 189 iG~-------------------t~lds~R~~~~lA~~l~v~~ 211 (289)
+|+ |.-++...-..+++++|..|
T Consensus 137 iG~HFfNP~~~m~LVEvI~g~~T~~e~~~~~~~~~~~igK~~ 178 (307)
T COG1250 137 IGLHFFNPVPLMPLVEVIRGEKTSDETVERVVEFAKKIGKTP 178 (307)
T ss_pred EEEeccCCCCcceeEEEecCCCCCHHHHHHHHHHHHHcCCCC
Confidence 998 22355556677888888554
No 47
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=98.97 E-value=2.7e-09 Score=92.03 Aligned_cols=117 Identities=25% Similarity=0.387 Sum_probs=77.0
Q ss_pred EEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCc-----hhHHhh-hh---ccc---------CCceEEEEecCCCHH
Q 022947 48 KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT-----PGVTAD-IS---HMD---------TNAVVRGFLGQQQLE 109 (289)
Q Consensus 48 KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~-----~g~~~D-L~---~~~---------~~~~v~~~~~t~d~~ 109 (289)
||+|||+ |.+|..+|..++..|+ +|.|+|.++. .....+ +. ... ...+++. ++|++
T Consensus 1 ~V~ViGa-G~mG~~iA~~~a~~G~--~V~l~d~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~---~~dl~ 74 (180)
T PF02737_consen 1 KVAVIGA-GTMGRGIAALFARAGY--EVTLYDRSPEALERARKRIERLLDRLVRKGRLSQEEADAALARISF---TTDLE 74 (180)
T ss_dssp EEEEES--SHHHHHHHHHHHHTTS--EEEEE-SSHHHHHHHHHHHHHHHHHHHHTTTTTHHHHHHHHHTEEE---ESSGG
T ss_pred CEEEEcC-CHHHHHHHHHHHhCCC--cEEEEECChHHHHhhhhHHHHHHhhhhhhccchhhhhhhhhhhccc---ccCHH
Confidence 7999998 9999999999999998 9999999871 111111 11 000 0224443 46775
Q ss_pred hhhCCCCEEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhC-CCcEEEEecCCCcccHHHHHHHHHHhCCCCCCcE
Q 022947 110 DALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCC-PKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRL 188 (289)
Q Consensus 110 eal~~aDiVIitag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~-p~aiviv~tNPvd~~t~~~~~~~~~~~~~~~~kv 188 (289)
+ +.+||+||.+. .++.++.+++...+++++ |++++ +||....-. +++. .... .|+|+
T Consensus 75 ~-~~~adlViEai--------------~E~l~~K~~~~~~l~~~~~~~~il--asnTSsl~i---~~la-~~~~-~p~R~ 132 (180)
T PF02737_consen 75 E-AVDADLVIEAI--------------PEDLELKQELFAELDEICPPDTIL--ASNTSSLSI---SELA-AALS-RPERF 132 (180)
T ss_dssp G-GCTESEEEE-S---------------SSHHHHHHHHHHHHCCS-TTSEE--EE--SSS-H---HHHH-TTSS-TGGGE
T ss_pred H-Hhhhheehhhc--------------cccHHHHHHHHHHHHHHhCCCceE--EecCCCCCH---HHHH-hccC-cCceE
Confidence 5 55999999984 357899999999999998 68876 788876533 2222 2333 57788
Q ss_pred EEee
Q 022947 189 LGVT 192 (289)
Q Consensus 189 iG~t 192 (289)
+|+-
T Consensus 133 ig~H 136 (180)
T PF02737_consen 133 IGMH 136 (180)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 8874
No 48
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=98.94 E-value=2.8e-09 Score=92.43 Aligned_cols=125 Identities=22% Similarity=0.310 Sum_probs=76.5
Q ss_pred CEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCc------hhH-------HhhhhcccC-CceEEEEecCCCHHhhh
Q 022947 47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT------PGV-------TADISHMDT-NAVVRGFLGQQQLEDAL 112 (289)
Q Consensus 47 ~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~------~g~-------~~DL~~~~~-~~~v~~~~~t~d~~eal 112 (289)
|||+|||. |+||..+|..|+..|+ +|+.+|+++. .|. ..++..... ..+++. ++|+++++
T Consensus 1 M~I~ViGl-GyvGl~~A~~lA~~G~--~V~g~D~~~~~v~~l~~g~~p~~E~~l~~ll~~~~~~~~l~~---t~~~~~ai 74 (185)
T PF03721_consen 1 MKIAVIGL-GYVGLPLAAALAEKGH--QVIGVDIDEEKVEALNNGELPIYEPGLDELLKENVSAGRLRA---TTDIEEAI 74 (185)
T ss_dssp -EEEEE---STTHHHHHHHHHHTTS--EEEEE-S-HHHHHHHHTTSSSS-CTTHHHHHHHHHHTTSEEE---ESEHHHHH
T ss_pred CEEEEECC-CcchHHHHHHHHhCCC--EEEEEeCChHHHHHHhhccccccccchhhhhccccccccchh---hhhhhhhh
Confidence 79999998 9999999999999998 9999999871 111 011211111 345554 45788889
Q ss_pred CCCCEEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhC-CCcEEEEe-cCCCcccHHHHHHHHHHhCCC
Q 022947 113 TGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCC-PKAIVNLI-SNPVNSTVPIAAEVFKKVGTY 183 (289)
Q Consensus 113 ~~aDiVIitag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~-p~aiviv~-tNPvd~~t~~~~~~~~~~~~~ 183 (289)
++||++|+|.+.|...+. .-+...+.+.++.|.++. ++.+|++= |=|+...-.++..++.+.++.
T Consensus 75 ~~adv~~I~VpTP~~~~~------~~Dls~v~~a~~~i~~~l~~~~lvV~~STvppGtt~~~~~~ile~~~~~ 141 (185)
T PF03721_consen 75 KDADVVFICVPTPSDEDG------SPDLSYVESAIESIAPVLRPGDLVVIESTVPPGTTEELLKPILEKRSGK 141 (185)
T ss_dssp HH-SEEEE----EBETTT------SBETHHHHHHHHHHHHHHCSCEEEEESSSSSTTHHHHHHHHHHHHHCCT
T ss_pred hccceEEEecCCCccccC------CccHHHHHHHHHHHHHHHhhcceEEEccEEEEeeehHhhhhhhhhhccc
Confidence 999999999998876532 124566777777777765 44443332 667777664555566665543
No 49
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=98.79 E-value=6.7e-08 Score=90.63 Aligned_cols=119 Identities=16% Similarity=0.126 Sum_probs=82.3
Q ss_pred CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCC-chhHH-------h-hhhccc-----CCceEEEEecCCCHHhh
Q 022947 46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-TPGVT-------A-DISHMD-----TNAVVRGFLGQQQLEDA 111 (289)
Q Consensus 46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~-~~g~~-------~-DL~~~~-----~~~~v~~~~~t~d~~ea 111 (289)
.+||+|||+ |.+|+.+|..++..|+ +|+++|+++ ..... + .+.... ...++. .+++++++
T Consensus 7 i~~VaVIGa-G~MG~giA~~~a~aG~--~V~l~D~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~---~~~~l~~a 80 (321)
T PRK07066 7 IKTFAAIGS-GVIGSGWVARALAHGL--DVVAWDPAPGAEAALRANVANAWPALERQGLAPGASPARLR---FVATIEAC 80 (321)
T ss_pred CCEEEEECc-CHHHHHHHHHHHhCCC--eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCChhhHHhhce---ecCCHHHH
Confidence 358999998 9999999999999998 999999986 11110 0 011010 012333 24578889
Q ss_pred hCCCCEEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCC-CcEEEEecCCCcccHHHHHHHHHHhCCCCCCcEEE
Q 022947 112 LTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCP-KAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLG 190 (289)
Q Consensus 112 l~~aDiVIitag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p-~aiviv~tNPvd~~t~~~~~~~~~~~~~~~~kviG 190 (289)
+++||+|+.++ .+|.++.+++...+.+++| ++ |+.||.+..... +. .... -.|+|++|
T Consensus 81 v~~aDlViEav--------------pE~l~vK~~lf~~l~~~~~~~a--IlaSnTS~l~~s---~l-a~~~-~~p~R~~g 139 (321)
T PRK07066 81 VADADFIQESA--------------PEREALKLELHERISRAAKPDA--IIASSTSGLLPT---DF-YARA-THPERCVV 139 (321)
T ss_pred hcCCCEEEECC--------------cCCHHHHHHHHHHHHHhCCCCe--EEEECCCccCHH---HH-HHhc-CCcccEEE
Confidence 99999999984 3578889999999999985 55 447888875432 22 2233 34578888
Q ss_pred e
Q 022947 191 V 191 (289)
Q Consensus 191 ~ 191 (289)
+
T Consensus 140 ~ 140 (321)
T PRK07066 140 G 140 (321)
T ss_pred E
Confidence 5
No 50
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=98.75 E-value=2.7e-08 Score=102.52 Aligned_cols=136 Identities=18% Similarity=0.199 Sum_probs=93.0
Q ss_pred ccccccccccccccCCC------CCCCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCC-c--hhH--Hh----hhh
Q 022947 27 EGESSGLGRMDCRAKGG------SPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-T--PGV--TA----DIS 91 (289)
Q Consensus 27 ~~~~~~~~~~~~~~~~~------~~~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~-~--~g~--~~----DL~ 91 (289)
||-..||.+..+..... ....||+|||| |.+|..+|..++..|+ +|+|+|+++ . .+. .. .+.
T Consensus 288 egi~aF~~~~~~~~~~~~~~~~~~~i~~v~ViGa-G~mG~gIA~~~a~~G~--~V~l~d~~~~~l~~~~~~~~~~l~~~~ 364 (715)
T PRK11730 288 ALVGIFLNDQYVKGKAKKLAKDAKPVKQAAVLGA-GIMGGGIAYQSASKGV--PVIMKDINQKALDLGMTEAAKLLNKQV 364 (715)
T ss_pred HHHHHHHHHHHhcCCCCCCCCCccccceEEEECC-chhHHHHHHHHHhCCC--eEEEEeCCHHHHHHHHHHHHHHHHHHH
Confidence 45555666655543321 13468999998 9999999999999998 999999987 1 111 11 111
Q ss_pred ccc---------CCceEEEEecCCCHHhhhCCCCEEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhC-CCcEEEE
Q 022947 92 HMD---------TNAVVRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCC-PKAIVNL 161 (289)
Q Consensus 92 ~~~---------~~~~v~~~~~t~d~~eal~~aDiVIitag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~-p~aiviv 161 (289)
... ...+++ .++|+ +++++||+||.++ .++.++.+++..++++++ |++++
T Consensus 365 ~~g~~~~~~~~~~~~~i~---~~~~~-~~~~~aDlViEav--------------~E~l~~K~~vf~~l~~~~~~~~il-- 424 (715)
T PRK11730 365 ERGKIDGAKMAGVLSSIR---PTLDY-AGFERVDVVVEAV--------------VENPKVKAAVLAEVEQKVREDTIL-- 424 (715)
T ss_pred HcCCCChhhHHHHHhCeE---EeCCH-HHhcCCCEEEecc--------------cCcHHHHHHHHHHHHhhCCCCcEE--
Confidence 110 012344 34677 7799999999984 358899999999999999 56655
Q ss_pred ecCCCcc-cHHHHHHHHHHhCCCCCCcEEEe
Q 022947 162 ISNPVNS-TVPIAAEVFKKVGTYDPKRLLGV 191 (289)
Q Consensus 162 ~tNPvd~-~t~~~~~~~~~~~~~~~~kviG~ 191 (289)
+||.+.+ ++.++ . ... .|+|++|+
T Consensus 425 asNTSsl~i~~la----~-~~~-~p~r~~g~ 449 (715)
T PRK11730 425 ASNTSTISISLLA----K-ALK-RPENFCGM 449 (715)
T ss_pred EEcCCCCCHHHHH----h-hcC-CCccEEEE
Confidence 7999885 34332 2 333 46789997
No 51
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=98.74 E-value=4.2e-08 Score=101.09 Aligned_cols=118 Identities=19% Similarity=0.224 Sum_probs=85.0
Q ss_pred CCCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCC-c--hhH--Hhhhhc----cc---------CCceEEEEecCC
Q 022947 45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-T--PGV--TADISH----MD---------TNAVVRGFLGQQ 106 (289)
Q Consensus 45 ~~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~-~--~g~--~~DL~~----~~---------~~~~v~~~~~t~ 106 (289)
..+||+|||| |.+|..+|..++..|+ +|+|+|+++ . .+. +.++.+ .. ...+++ .++
T Consensus 312 ~i~~v~ViGa-G~mG~gIA~~~a~~G~--~V~l~d~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~---~~~ 385 (714)
T TIGR02437 312 DVKQAAVLGA-GIMGGGIAYQSASKGT--PIVMKDINQHSLDLGLTEAAKLLNKQVERGRITPAKMAGVLNGIT---PTL 385 (714)
T ss_pred ccceEEEECC-chHHHHHHHHHHhCCC--eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeE---EeC
Confidence 4569999998 9999999999999998 999999987 1 111 111111 00 012333 345
Q ss_pred CHHhhhCCCCEEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhC-CCcEEEEecCCCccc-HHHHHHHHHHhCCCC
Q 022947 107 QLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCC-PKAIVNLISNPVNST-VPIAAEVFKKVGTYD 184 (289)
Q Consensus 107 d~~eal~~aDiVIitag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~-p~aiviv~tNPvd~~-t~~~~~~~~~~~~~~ 184 (289)
|+ +++++||+||.++ .+++++.+++..++.+++ |++++ +||.+.+- +.++ . .+ -.
T Consensus 386 ~~-~~~~~aDlViEav--------------~E~l~~K~~vf~~l~~~~~~~~il--asnTS~l~i~~ia----~-~~-~~ 442 (714)
T TIGR02437 386 SY-AGFDNVDIVVEAV--------------VENPKVKAAVLAEVEQHVREDAIL--ASNTSTISISLLA----K-AL-KR 442 (714)
T ss_pred CH-HHhcCCCEEEEcC--------------cccHHHHHHHHHHHHhhCCCCcEE--EECCCCCCHHHHH----h-hc-CC
Confidence 77 7799999999984 358899999999999998 67766 89998853 3332 2 33 34
Q ss_pred CCcEEEe
Q 022947 185 PKRLLGV 191 (289)
Q Consensus 185 ~~kviG~ 191 (289)
|+|++|+
T Consensus 443 p~r~ig~ 449 (714)
T TIGR02437 443 PENFCGM 449 (714)
T ss_pred cccEEEE
Confidence 7889998
No 52
>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial. Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).
Probab=98.72 E-value=5e-08 Score=100.82 Aligned_cols=118 Identities=21% Similarity=0.247 Sum_probs=84.6
Q ss_pred CCCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCC-c--hhH--Hhhhhcc----c---------CCceEEEEecCC
Q 022947 45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-T--PGV--TADISHM----D---------TNAVVRGFLGQQ 106 (289)
Q Consensus 45 ~~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~-~--~g~--~~DL~~~----~---------~~~~v~~~~~t~ 106 (289)
...||+|||| |.+|+.+|..++..|+ +|+|+|+++ . .+. ..+..+. . ...+++ .++
T Consensus 334 ~i~~v~ViGa-G~MG~gIA~~~a~~G~--~V~l~d~~~~~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~---~~~ 407 (737)
T TIGR02441 334 PVKTLAVLGA-GLMGAGIAQVSVDKGL--KTVLKDATPAGLDRGQQQVFKGLNKKVKRKKITSLERDSILSNLT---PTL 407 (737)
T ss_pred cccEEEEECC-CHhHHHHHHHHHhCCC--cEEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeE---EeC
Confidence 3468999999 9999999999999998 999999987 1 111 1111110 0 012343 346
Q ss_pred CHHhhhCCCCEEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhC-CCcEEEEecCCCcc-cHHHHHHHHHHhCCCC
Q 022947 107 QLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCC-PKAIVNLISNPVNS-TVPIAAEVFKKVGTYD 184 (289)
Q Consensus 107 d~~eal~~aDiVIitag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~-p~aiviv~tNPvd~-~t~~~~~~~~~~~~~~ 184 (289)
|+ +++++||+||.++ .+|.++.+++..++.+++ |++++ +||.+.+ ++.++ . .+ -.
T Consensus 408 ~~-~~~~~aDlViEAv--------------~E~l~~K~~vf~~l~~~~~~~~il--asNTSsl~i~~la----~-~~-~~ 464 (737)
T TIGR02441 408 DY-SGFKNADMVIEAV--------------FEDLSLKHKVIKEVEAVVPPHCII--ASNTSALPIKDIA----A-VS-SR 464 (737)
T ss_pred CH-HHhccCCeehhhc--------------cccHHHHHHHHHHHHhhCCCCcEE--EEcCCCCCHHHHH----h-hc-CC
Confidence 77 6899999999984 468999999999999998 57665 7999885 33332 2 23 34
Q ss_pred CCcEEEe
Q 022947 185 PKRLLGV 191 (289)
Q Consensus 185 ~~kviG~ 191 (289)
|+|++|+
T Consensus 465 p~r~ig~ 471 (737)
T TIGR02441 465 PEKVIGM 471 (737)
T ss_pred ccceEEE
Confidence 6889997
No 53
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=98.72 E-value=1.5e-07 Score=86.97 Aligned_cols=117 Identities=19% Similarity=0.294 Sum_probs=80.3
Q ss_pred CEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCC-c--hh--HHhh----hhccc---------CCceEEEEecCCCH
Q 022947 47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-T--PG--VTAD----ISHMD---------TNAVVRGFLGQQQL 108 (289)
Q Consensus 47 ~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~-~--~g--~~~D----L~~~~---------~~~~v~~~~~t~d~ 108 (289)
.||+|||+ |.+|..+|..++..|+ +|+++|+++ . .+ ...+ +.+.. ...+++ .++|+
T Consensus 6 ~~V~ViGa-G~mG~~iA~~~a~~G~--~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~---~~~~~ 79 (286)
T PRK07819 6 QRVGVVGA-GQMGAGIAEVCARAGV--DVLVFETTEELATAGRNRIEKSLERAVSRGKLTERERDAALARLR---FTTDL 79 (286)
T ss_pred cEEEEEcc-cHHHHHHHHHHHhCCC--EEEEEECCHHHHHHHHHHHHHHHHHHHhcccCChhhHHHHHhCeE---eeCCH
Confidence 48999998 9999999999999998 999999987 1 11 1111 11110 012333 24677
Q ss_pred HhhhCCCCEEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhC--CCcEEEEecCCCcccHHHHHHHHHHhCCCCCC
Q 022947 109 EDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCC--PKAIVNLISNPVNSTVPIAAEVFKKVGTYDPK 186 (289)
Q Consensus 109 ~eal~~aDiVIitag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~--p~aiviv~tNPvd~~t~~~~~~~~~~~~~~~~ 186 (289)
+++++||+||.++ .+|.++.+++...+.+++ |++++ +||....-... +..... .|+
T Consensus 80 -~~~~~~d~ViEav--------------~E~~~~K~~l~~~l~~~~~~~~~il--~snTS~~~~~~----la~~~~-~~~ 137 (286)
T PRK07819 80 -GDFADRQLVIEAV--------------VEDEAVKTEIFAELDKVVTDPDAVL--ASNTSSIPIMK----LAAATK-RPG 137 (286)
T ss_pred -HHhCCCCEEEEec--------------ccCHHHHHHHHHHHHHhhCCCCcEE--EECCCCCCHHH----HHhhcC-CCc
Confidence 7799999999984 357888999999999997 46555 68877754322 222333 456
Q ss_pred cEEEe
Q 022947 187 RLLGV 191 (289)
Q Consensus 187 kviG~ 191 (289)
|++|+
T Consensus 138 r~~g~ 142 (286)
T PRK07819 138 RVLGL 142 (286)
T ss_pred cEEEE
Confidence 78877
No 54
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=98.71 E-value=1.8e-07 Score=86.23 Aligned_cols=119 Identities=20% Similarity=0.309 Sum_probs=77.8
Q ss_pred CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCc-hhHHh----hhhcc-----cC---------CceEEEEecCC
Q 022947 46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT-PGVTA----DISHM-----DT---------NAVVRGFLGQQ 106 (289)
Q Consensus 46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~-~g~~~----DL~~~-----~~---------~~~v~~~~~t~ 106 (289)
.+||+|||+ |.+|+.+|..++..|+ +|+++|+++. ...+. .+.+. .. ..++. .++
T Consensus 3 ~~kIaViGa-G~mG~~iA~~la~~G~--~V~l~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~---~~~ 76 (287)
T PRK08293 3 IKNVTVAGA-GVLGSQIAFQTAFHGF--DVTIYDISDEALEKAKERIAKLADRYVRDLEATKEAPAEAALNRIT---LTT 76 (287)
T ss_pred ccEEEEECC-CHHHHHHHHHHHhcCC--eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhHHHHHcCeE---EeC
Confidence 359999998 9999999999999998 9999999861 11111 11110 00 11333 246
Q ss_pred CHHhhhCCCCEEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCC-CcEEEEecCCCcccHHHHHHHHHHhCCCCC
Q 022947 107 QLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCP-KAIVNLISNPVNSTVPIAAEVFKKVGTYDP 185 (289)
Q Consensus 107 d~~eal~~aDiVIitag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p-~aiviv~tNPvd~~t~~~~~~~~~~~~~~~ 185 (289)
|+++++++||+||++.. .+.+..+++.+.+.++++ ++++ ++|.+..... ++.. ... .+
T Consensus 77 d~~~a~~~aDlVieavp--------------e~~~~k~~~~~~l~~~~~~~~ii--~sntSt~~~~---~~~~-~~~-~~ 135 (287)
T PRK08293 77 DLAEAVKDADLVIEAVP--------------EDPEIKGDFYEELAKVAPEKTIF--ATNSSTLLPS---QFAE-ATG-RP 135 (287)
T ss_pred CHHHHhcCCCEEEEecc--------------CCHHHHHHHHHHHHhhCCCCCEE--EECcccCCHH---HHHh-hcC-Cc
Confidence 78788999999999852 346778888888888875 5544 5677665331 2222 222 35
Q ss_pred CcEEEe
Q 022947 186 KRLLGV 191 (289)
Q Consensus 186 ~kviG~ 191 (289)
+|++|+
T Consensus 136 ~r~vg~ 141 (287)
T PRK08293 136 EKFLAL 141 (287)
T ss_pred ccEEEE
Confidence 677775
No 55
>PLN02353 probable UDP-glucose 6-dehydrogenase
Probab=98.70 E-value=2.2e-07 Score=91.53 Aligned_cols=123 Identities=15% Similarity=0.162 Sum_probs=80.2
Q ss_pred CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCch------hH-------HhhhhcccCCceEEEEecCCCHHhhh
Q 022947 46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP------GV-------TADISHMDTNAVVRGFLGQQQLEDAL 112 (289)
Q Consensus 46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~------g~-------~~DL~~~~~~~~v~~~~~t~d~~eal 112 (289)
+|||+|||+ |+||..+|..|+..|..-+|+.+|+++.+ +. ..+|........+. .++++.+++
T Consensus 1 ~m~I~ViG~-GyvGl~~A~~lA~~g~g~~V~gvD~~~~~v~~l~~g~~~~~e~gl~ell~~~~~~~l~---~t~~~~~~i 76 (473)
T PLN02353 1 MVKICCIGA-GYVGGPTMAVIALKCPDIEVVVVDISVPRIDAWNSDQLPIYEPGLDEVVKQCRGKNLF---FSTDVEKHV 76 (473)
T ss_pred CCEEEEECC-CHHHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHcCCCccCCCCHHHHHHHhhcCCEE---EEcCHHHHH
Confidence 579999998 99999999999988643489999998721 11 01111100011233 356777889
Q ss_pred CCCCEEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEe--cCCCcccHHHH
Q 022947 113 TGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLI--SNPVNSTVPIA 173 (289)
Q Consensus 113 ~~aDiVIitag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~aiviv~--tNPvd~~t~~~ 173 (289)
++||++|+|.++|...+....+ -.-++..+.+.++.|.++.++..+++. |-|..+.-.+.
T Consensus 77 ~~advi~I~V~TP~~~~g~~~~-~~~Dls~v~~a~~~i~~~l~~~~lVv~~STvp~Gtt~~~~ 138 (473)
T PLN02353 77 AEADIVFVSVNTPTKTRGLGAG-KAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAIE 138 (473)
T ss_pred hcCCEEEEEeCCCCCCCCCcCC-CCCcHHHHHHHHHHHHhhCCCCcEEEEeCCCCCChHHHHH
Confidence 9999999999999754210000 023566788888888888755444443 77887754443
No 56
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=98.70 E-value=1.4e-07 Score=97.36 Aligned_cols=117 Identities=21% Similarity=0.328 Sum_probs=83.8
Q ss_pred CCEEEEEcCCCccHHHHHHHHH-hCCCccEEEEEeCCC-c--hh--HHhhhhc----cc---------CCceEEEEecCC
Q 022947 46 GFKVAVLGAAGGIGQPLAMLMK-INPLVSVLHLYDVVN-T--PG--VTADISH----MD---------TNAVVRGFLGQQ 106 (289)
Q Consensus 46 ~~KI~IIGaaG~VGs~la~~L~-~~g~~~eI~LvD~~~-~--~g--~~~DL~~----~~---------~~~~v~~~~~t~ 106 (289)
.+||+|||| |.+|..+|..++ ..|+ +|+|+|+++ . .+ .+.+..+ .. ...+++. ++
T Consensus 309 i~~v~ViGa-G~mG~giA~~~a~~~G~--~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~---~~ 382 (708)
T PRK11154 309 VNKVGVLGG-GLMGGGIAYVTATKAGL--PVRIKDINPQGINHALKYSWDLLDKKVKRRHLKPSERDKQMALISG---TT 382 (708)
T ss_pred ccEEEEECC-chhhHHHHHHHHHHcCC--eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhcEEE---eC
Confidence 479999998 999999999988 7798 999999986 1 11 1111111 00 0123443 46
Q ss_pred CHHhhhCCCCEEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhC-CCcEEEEecCCCccc-HHHHHHHHHHhCCCC
Q 022947 107 QLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCC-PKAIVNLISNPVNST-VPIAAEVFKKVGTYD 184 (289)
Q Consensus 107 d~~eal~~aDiVIitag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~-p~aiviv~tNPvd~~-t~~~~~~~~~~~~~~ 184 (289)
|+ +++++||+||.++ .+|.++.+++..++++++ |++++ +||.+.+. +.++ . .. -.
T Consensus 383 ~~-~~~~~aDlViEav--------------~E~~~~K~~v~~~le~~~~~~~il--asnTS~l~i~~la----~-~~-~~ 439 (708)
T PRK11154 383 DY-RGFKHADVVIEAV--------------FEDLALKQQMVAEVEQNCAPHTIF--ASNTSSLPIGQIA----A-AA-AR 439 (708)
T ss_pred Ch-HHhccCCEEeecc--------------cccHHHHHHHHHHHHhhCCCCcEE--EECCCCCCHHHHH----H-hc-Cc
Confidence 77 7899999999984 468999999999999998 67766 79998854 3332 2 23 34
Q ss_pred CCcEEEe
Q 022947 185 PKRLLGV 191 (289)
Q Consensus 185 ~~kviG~ 191 (289)
|+|++|+
T Consensus 440 p~r~ig~ 446 (708)
T PRK11154 440 PEQVIGL 446 (708)
T ss_pred ccceEEE
Confidence 6788887
No 57
>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.
Probab=98.65 E-value=1.3e-07 Score=97.23 Aligned_cols=118 Identities=19% Similarity=0.292 Sum_probs=83.0
Q ss_pred CCCEEEEEcCCCccHHHHHHHHH-hCCCccEEEEEeCCC-c--hh--HHhh-hhcc---c---------CCceEEEEecC
Q 022947 45 PGFKVAVLGAAGGIGQPLAMLMK-INPLVSVLHLYDVVN-T--PG--VTAD-ISHM---D---------TNAVVRGFLGQ 105 (289)
Q Consensus 45 ~~~KI~IIGaaG~VGs~la~~L~-~~g~~~eI~LvD~~~-~--~g--~~~D-L~~~---~---------~~~~v~~~~~t 105 (289)
+.+||+|||| |.+|+.+|..++ ..|+ +|+|+|+++ . .+ .+.+ +... . ...+++ .+
T Consensus 303 ~i~~v~ViGa-G~mG~~iA~~~a~~~G~--~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~---~~ 376 (699)
T TIGR02440 303 KIKKVGILGG-GLMGGGIASVTATKAGI--PVRIKDINPQGINNALKYAWKLLDKGVKRRHMTPAERDNQMALIT---GT 376 (699)
T ss_pred cccEEEEECC-cHHHHHHHHHHHHHcCC--eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHcCeE---Ee
Confidence 3468999998 999999999888 4798 999999987 1 11 1111 1110 0 012343 34
Q ss_pred CCHHhhhCCCCEEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhC-CCcEEEEecCCCcc-cHHHHHHHHHHhCCC
Q 022947 106 QQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCC-PKAIVNLISNPVNS-TVPIAAEVFKKVGTY 183 (289)
Q Consensus 106 ~d~~eal~~aDiVIitag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~-p~aiviv~tNPvd~-~t~~~~~~~~~~~~~ 183 (289)
+|+ +++++||+||.++ .++.++.+++..++.+++ |++++ +||.+.+ ++.++ . .. -
T Consensus 377 ~~~-~~~~~adlViEav--------------~E~l~~K~~v~~~l~~~~~~~~il--asnTS~l~i~~la----~-~~-~ 433 (699)
T TIGR02440 377 TDY-RGFKDVDIVIEAV--------------FEDLALKHQMVKDIEQECAAHTIF--ASNTSSLPIGQIA----A-AA-S 433 (699)
T ss_pred CCh-HHhccCCEEEEec--------------cccHHHHHHHHHHHHhhCCCCcEE--EeCCCCCCHHHHH----H-hc-C
Confidence 677 6899999999984 357899999999999999 56655 7999885 44332 2 22 3
Q ss_pred CCCcEEEe
Q 022947 184 DPKRLLGV 191 (289)
Q Consensus 184 ~~~kviG~ 191 (289)
.|+|++|+
T Consensus 434 ~p~r~~g~ 441 (699)
T TIGR02440 434 RPENVIGL 441 (699)
T ss_pred CcccEEEE
Confidence 56789987
No 58
>PF01073 3Beta_HSD: 3-beta hydroxysteroid dehydrogenase/isomerase family; InterPro: IPR002225 The enzyme 3 beta-hydroxysteroid dehydrogenase/5-ene-4-ene isomerase (3 beta-HSD) catalyses the oxidation and isomerisation of 5-ene-3 beta-hydroxypregnene and 5-ene-hydroxyandrostene steroid precursors into the corresponding 4-ene-ketosteroids necessary for the formation of all classes of steroid hormones. 3Beta_HSD; GO: 0003854 3-beta-hydroxy-delta5-steroid dehydrogenase activity, 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0006694 steroid biosynthetic process, 0055114 oxidation-reduction process
Probab=98.62 E-value=2.7e-07 Score=84.93 Aligned_cols=117 Identities=17% Similarity=0.295 Sum_probs=79.6
Q ss_pred EEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchhHHhhhhcccCCceEE-EEecCCCHHhhhCCCCEEEEcCCCCCCC
Q 022947 50 AVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVR-GFLGQQQLEDALTGMDIVIIPAGVPRKP 128 (289)
Q Consensus 50 ~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g~~~DL~~~~~~~~v~-~~~~t~d~~eal~~aDiVIitag~~~~~ 128 (289)
.|+||+||+|++++..|+.+|...+|..+|+.+......++........+. .+....++.++++++|+||++|+...-.
T Consensus 1 LVTGgsGflG~~iv~~Ll~~g~~~~Vr~~d~~~~~~~~~~~~~~~~~~~~~~Di~d~~~l~~a~~g~d~V~H~Aa~~~~~ 80 (280)
T PF01073_consen 1 LVTGGSGFLGSHIVRQLLERGYIYEVRVLDRSPPPKFLKDLQKSGVKEYIQGDITDPESLEEALEGVDVVFHTAAPVPPW 80 (280)
T ss_pred CEEcCCcHHHHHHHHHHHHCCCceEEEEcccccccccchhhhcccceeEEEeccccHHHHHHHhcCCceEEEeCcccccc
Confidence 389999999999999999999555999999876322211222221110111 1223356889999999999998754333
Q ss_pred C-CchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecCCCcc
Q 022947 129 G-MTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNS 168 (289)
Q Consensus 129 g-~~r~d~~~~N~~i~~~i~~~i~~~~p~aiviv~tNPvd~ 168 (289)
+ ..+..+...|+...+.+++...+..-+.+ |+|..+++
T Consensus 81 ~~~~~~~~~~vNV~GT~nvl~aa~~~~Vkrl--VytSS~~v 119 (280)
T PF01073_consen 81 GDYPPEEYYKVNVDGTRNVLEAARKAGVKRL--VYTSSISV 119 (280)
T ss_pred CcccHHHHHHHHHHHHHHHHHHHHHcCCCEE--EEEcCcce
Confidence 3 35667889999999999999998764433 34555444
No 59
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=98.60 E-value=7.7e-07 Score=81.70 Aligned_cols=118 Identities=21% Similarity=0.366 Sum_probs=77.8
Q ss_pred CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCc---hhH-----H-hhhhccc---------CCceEEEEecCCC
Q 022947 46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT---PGV-----T-ADISHMD---------TNAVVRGFLGQQQ 107 (289)
Q Consensus 46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~---~g~-----~-~DL~~~~---------~~~~v~~~~~t~d 107 (289)
.+||+|||+ |.+|..++..++..|+ +|+++|+++. .+. . .++.... ...+++. ++|
T Consensus 3 ~~kI~VIG~-G~mG~~ia~~la~~g~--~V~~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~l~~---~~~ 76 (282)
T PRK05808 3 IQKIGVIGA-GTMGNGIAQVCAVAGY--DVVMVDISDAAVDRGLATITKSLDRLVKKGKMTEADKEAALARITG---TTD 76 (282)
T ss_pred ccEEEEEcc-CHHHHHHHHHHHHCCC--ceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEE---eCC
Confidence 458999998 9999999999999998 9999999872 111 0 0111110 0113332 456
Q ss_pred HHhhhCCCCEEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCC-CcEEEEecCCCcccHHHHHHHHHHhCCCCCC
Q 022947 108 LEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCP-KAIVNLISNPVNSTVPIAAEVFKKVGTYDPK 186 (289)
Q Consensus 108 ~~eal~~aDiVIitag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p-~aiviv~tNPvd~~t~~~~~~~~~~~~~~~~ 186 (289)
+ +++++||+||+++ ..+....+++.+.+.++++ ++++ +||-..+-...+ ....+. +.
T Consensus 77 ~-~~~~~aDlVi~av--------------~e~~~~k~~~~~~l~~~~~~~~il--~s~ts~~~~~~l----a~~~~~-~~ 134 (282)
T PRK05808 77 L-DDLKDADLVIEAA--------------TENMDLKKKIFAQLDEIAKPEAIL--ATNTSSLSITEL----AAATKR-PD 134 (282)
T ss_pred H-HHhccCCeeeecc--------------cccHHHHHHHHHHHHhhCCCCcEE--EECCCCCCHHHH----HHhhCC-Cc
Confidence 6 5689999999985 2356677788888998884 6655 677777544222 223333 45
Q ss_pred cEEEe
Q 022947 187 RLLGV 191 (289)
Q Consensus 187 kviG~ 191 (289)
|++|+
T Consensus 135 r~ig~ 139 (282)
T PRK05808 135 KVIGM 139 (282)
T ss_pred ceEEe
Confidence 78886
No 60
>PRK15181 Vi polysaccharide biosynthesis protein TviC; Provisional
Probab=98.58 E-value=1.7e-06 Score=81.59 Aligned_cols=169 Identities=13% Similarity=0.016 Sum_probs=102.5
Q ss_pred CCCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCc--hhHHhhhhc---ccCCceEEEEec----CCCHHhhhCCC
Q 022947 45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISH---MDTNAVVRGFLG----QQQLEDALTGM 115 (289)
Q Consensus 45 ~~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~--~g~~~DL~~---~~~~~~v~~~~~----t~d~~eal~~a 115 (289)
+++||.|+||+|++|++++..|+..|. +|+.+|+... .....++.. ......+..+.+ ..++.+.++++
T Consensus 14 ~~~~vlVtGatGfiG~~lv~~L~~~g~--~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Di~d~~~l~~~~~~~ 91 (348)
T PRK15181 14 APKRWLITGVAGFIGSGLLEELLFLNQ--TVIGLDNFSTGYQHNLDDVRTSVSEEQWSRFIFIQGDIRKFTDCQKACKNV 91 (348)
T ss_pred cCCEEEEECCccHHHHHHHHHHHHCCC--EEEEEeCCCCcchhhhhhhhhccccccCCceEEEEccCCCHHHHHHHhhCC
Confidence 357999999999999999999999987 9999997541 101111110 000112222221 12344567899
Q ss_pred CEEEEcCCCCCCC--CCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecCC------CcccHHHHHHHHHHhCCCCCCc
Q 022947 116 DIVIIPAGVPRKP--GMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNP------VNSTVPIAAEVFKKVGTYDPKR 187 (289)
Q Consensus 116 DiVIitag~~~~~--g~~r~d~~~~N~~i~~~i~~~i~~~~p~aiviv~tNP------vd~~t~~~~~~~~~~~~~~~~k 187 (289)
|+||++|+....+ .+...+....|+....++.+.+++....- ++.+|.. .+.. . .+.....|..
T Consensus 92 d~ViHlAa~~~~~~~~~~~~~~~~~Nv~gt~nll~~~~~~~~~~-~v~~SS~~vyg~~~~~~--~-----~e~~~~~p~~ 163 (348)
T PRK15181 92 DYVLHQAALGSVPRSLKDPIATNSANIDGFLNMLTAARDAHVSS-FTYAASSSTYGDHPDLP--K-----IEERIGRPLS 163 (348)
T ss_pred CEEEECccccCchhhhhCHHHHHHHHHHHHHHHHHHHHHcCCCe-EEEeechHhhCCCCCCC--C-----CCCCCCCCCC
Confidence 9999999864322 12334567889999999999998875443 3333311 1100 0 0011123445
Q ss_pred EEEeeeccHHHHHHHHHHHcCCCCccee-eeEEcccC
Q 022947 188 LLGVTMLDVVRANTFVAEVLGLDPREVD-VPVVGGHA 223 (289)
Q Consensus 188 viG~t~lds~R~~~~lA~~l~v~~~~V~-~~V~G~hg 223 (289)
.+|.+.+...++....++..+++...++ ..|.|.+.
T Consensus 164 ~Y~~sK~~~e~~~~~~~~~~~~~~~~lR~~~vyGp~~ 200 (348)
T PRK15181 164 PYAVTKYVNELYADVFARSYEFNAIGLRYFNVFGRRQ 200 (348)
T ss_pred hhhHHHHHHHHHHHHHHHHhCCCEEEEEecceeCcCC
Confidence 6777665555555555677788888887 45889753
No 61
>PLN02166 dTDP-glucose 4,6-dehydratase
Probab=98.57 E-value=7.6e-07 Score=86.93 Aligned_cols=177 Identities=14% Similarity=0.056 Sum_probs=103.1
Q ss_pred cccccccCCCCCCCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchhHHhhhhcccCCceEEEEecCCCHHhhhC
Q 022947 34 GRMDCRAKGGSPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALT 113 (289)
Q Consensus 34 ~~~~~~~~~~~~~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~eal~ 113 (289)
+|.+--++ .+.|||.|+||+||||++++..|+.+|+ +|+.+|+... +....+.+......+..+.. +-..+.+.
T Consensus 110 ~~~~~~~~--~~~mkILVTGatGFIGs~Lv~~Ll~~G~--~V~~ldr~~~-~~~~~~~~~~~~~~~~~~~~-Di~~~~~~ 183 (436)
T PLN02166 110 GRVPVGIG--RKRLRIVVTGGAGFVGSHLVDKLIGRGD--EVIVIDNFFT-GRKENLVHLFGNPRFELIRH-DVVEPILL 183 (436)
T ss_pred CCCCcccc--cCCCEEEEECCccHHHHHHHHHHHHCCC--EEEEEeCCCC-ccHhHhhhhccCCceEEEEC-cccccccc
Confidence 55555555 4568999999999999999999999998 9999997531 11011111100122332221 11234578
Q ss_pred CCCEEEEcCCCCC--CCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecCCC------c-ccHHHHHHHHHH-hCCC
Q 022947 114 GMDIVIIPAGVPR--KPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPV------N-STVPIAAEVFKK-VGTY 183 (289)
Q Consensus 114 ~aDiVIitag~~~--~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~aiviv~tNPv------d-~~t~~~~~~~~~-~~~~ 183 (289)
++|+||++|+... ....+..+++..|+....++++.+++.+. .+|++|.-. + .++ |-.+. ..-.
T Consensus 184 ~~D~ViHlAa~~~~~~~~~~p~~~~~~Nv~gT~nLleaa~~~g~--r~V~~SS~~VYg~~~~~p~~----E~~~~~~~p~ 257 (436)
T PLN02166 184 EVDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGA--RFLLTSTSEVYGDPLEHPQK----ETYWGNVNPI 257 (436)
T ss_pred CCCEEEECceeccchhhccCHHHHHHHHHHHHHHHHHHHHHhCC--EEEEECcHHHhCCCCCCCCC----ccccccCCCC
Confidence 9999999997532 11223456788999999999999988753 455554311 0 000 00000 0011
Q ss_pred CCCcEEEeeeccHHHHHHHHHHHcCCCCcceee-eEEccc
Q 022947 184 DPKRLLGVTMLDVVRANTFVAEVLGLDPREVDV-PVVGGH 222 (289)
Q Consensus 184 ~~~kviG~t~lds~R~~~~lA~~l~v~~~~V~~-~V~G~h 222 (289)
.+...+|.+.+...++-...++..+++..-++. .|+|.+
T Consensus 258 ~p~s~Yg~SK~~aE~~~~~y~~~~~l~~~ilR~~~vYGp~ 297 (436)
T PLN02166 258 GERSCYDEGKRTAETLAMDYHRGAGVEVRIARIFNTYGPR 297 (436)
T ss_pred CCCCchHHHHHHHHHHHHHHHHHhCCCeEEEEEccccCCC
Confidence 223445655544444444455666776666663 478865
No 62
>TIGR01915 npdG NADPH-dependent F420 reductase. This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.
Probab=98.55 E-value=1e-06 Score=78.11 Aligned_cols=100 Identities=21% Similarity=0.174 Sum_probs=64.1
Q ss_pred CEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCc--hhHHhhhhccc----CCceEEEEecCCCHHhhhCCCCEEEE
Q 022947 47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMD----TNAVVRGFLGQQQLEDALTGMDIVII 120 (289)
Q Consensus 47 ~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~--~g~~~DL~~~~----~~~~v~~~~~t~d~~eal~~aDiVIi 120 (289)
|||+|||++|.+|++++..|+..|+ +|.++|+++. .....+..+.. ....+.. + +.+++++++|+||+
T Consensus 1 MkI~IIGG~G~mG~ala~~L~~~G~--~V~v~~r~~~~~~~l~~~~~~~~~~~g~~~~~~~---~-~~~ea~~~aDvVil 74 (219)
T TIGR01915 1 MKIAVLGGTGDQGKGLALRLAKAGN--KIIIGSRDLEKAEEAAAKALEELGHGGSDIKVTG---A-DNAEAAKRADVVIL 74 (219)
T ss_pred CEEEEEcCCCHHHHHHHHHHHhCCC--EEEEEEcCHHHHHHHHHHHHhhccccCCCceEEE---e-ChHHHHhcCCEEEE
Confidence 6899998449999999999999886 9999998762 22222222111 0111221 1 34578999999999
Q ss_pred cCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecCCCcc
Q 022947 121 PAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNS 168 (289)
Q Consensus 121 tag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~aiviv~tNPvd~ 168 (289)
+.. ...+.++++.+....++.+|+-++||.+.
T Consensus 75 avp----------------~~~~~~~l~~l~~~l~~~vvI~~~ngi~~ 106 (219)
T TIGR01915 75 AVP----------------WDHVLKTLESLRDELSGKLVISPVVPLAS 106 (219)
T ss_pred ECC----------------HHHHHHHHHHHHHhccCCEEEEeccCcee
Confidence 852 12234444455444445678888999864
No 63
>KOG2304 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism]
Probab=98.54 E-value=1.1e-07 Score=84.13 Aligned_cols=120 Identities=21% Similarity=0.323 Sum_probs=85.2
Q ss_pred CCCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCC-c-----hhHHhhhhccc-----------------CCceEEE
Q 022947 45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-T-----PGVTADISHMD-----------------TNAVVRG 101 (289)
Q Consensus 45 ~~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~-~-----~g~~~DL~~~~-----------------~~~~v~~ 101 (289)
+.+.|+|+|| |.+|+.+|+..+..|+ .|.|+|.++ . ++...-+.+.. ...+++
T Consensus 10 ~~~~V~ivGa-G~MGSGIAQv~a~sg~--~V~l~d~~~~aL~~A~~~I~~sl~rvakKk~~~~~~~~~e~v~~~l~ri~- 85 (298)
T KOG2304|consen 10 EIKNVAIVGA-GQMGSGIAQVAATSGL--NVWLVDANEDALSRATKAISSSLKRVAKKKKADDPVALEEFVDDTLDRIK- 85 (298)
T ss_pred cccceEEEcc-cccchhHHHHHHhcCC--ceEEecCCHHHHHHHHHHHHHHHHHHHhhcccCChhhHHHHHHHHHHHHH-
Confidence 4568999998 9999999999999999 999999987 1 11111111110 011222
Q ss_pred EecCCCHHhhhCCCCEEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecCCCcc-cHHHHHHHHHHh
Q 022947 102 FLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNS-TVPIAAEVFKKV 180 (289)
Q Consensus 102 ~~~t~d~~eal~~aDiVIitag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~aiviv~tNPvd~-~t~~~~~~~~~~ 180 (289)
.++|...++.|||+||.+ ..+|+++.+++.+.+.+.|+...++ .||.+.. ++.++ ..
T Consensus 86 --~~tnv~~~v~dadliiEA--------------ivEn~diK~~lF~~l~~~ak~~~il-~tNTSSl~lt~ia-----~~ 143 (298)
T KOG2304|consen 86 --TSTNVSDAVSDADLIIEA--------------IVENLDIKRKLFKDLDKIAKSSTIL-ATNTSSLSLTDIA-----SA 143 (298)
T ss_pred --HcCCHHHhhhhhHHHHHH--------------HHHhHHHHHHHHHHHHhhcccceEE-eecccceeHHHHH-----hh
Confidence 245778889999999876 4679999999999999999544333 6999875 44433 12
Q ss_pred CCCCCCcEEEe
Q 022947 181 GTYDPKRLLGV 191 (289)
Q Consensus 181 ~~~~~~kviG~ 191 (289)
. -+|.|+.|+
T Consensus 144 ~-~~~srf~Gl 153 (298)
T KOG2304|consen 144 T-QRPSRFAGL 153 (298)
T ss_pred c-cChhhhcee
Confidence 2 456788888
No 64
>PLN00198 anthocyanidin reductase; Provisional
Probab=98.53 E-value=3.7e-06 Score=78.61 Aligned_cols=175 Identities=15% Similarity=0.062 Sum_probs=98.9
Q ss_pred CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCC-chhHHhhhhcccCCceEEEEe----cCCCHHhhhCCCCEEEE
Q 022947 46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-TPGVTADISHMDTNAVVRGFL----GQQQLEDALTGMDIVII 120 (289)
Q Consensus 46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~-~~g~~~DL~~~~~~~~v~~~~----~t~d~~eal~~aDiVIi 120 (289)
++||.|+||+|++|++++..|+..|. +|++++++. ......++.......++..+. ...++.+.++++|+||+
T Consensus 9 ~~~vlItG~~GfIG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vih 86 (338)
T PLN00198 9 KKTACVIGGTGFLASLLIKLLLQKGY--AVNTTVRDPENQKKIAHLRALQELGDLKIFGADLTDEESFEAPIAGCDLVFH 86 (338)
T ss_pred CCeEEEECCchHHHHHHHHHHHHCCC--EEEEEECCCCCHHHHHHHHhcCCCCceEEEEcCCCChHHHHHHHhcCCEEEE
Confidence 56899999999999999999999997 887777654 211111111110011222221 12235567889999999
Q ss_pred cCCCCCCCCCc-hhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecCCCccc-------HHHHHHHHH-----HhCCCCCCc
Q 022947 121 PAGVPRKPGMT-RDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNST-------VPIAAEVFK-----KVGTYDPKR 187 (289)
Q Consensus 121 tag~~~~~g~~-r~d~~~~N~~i~~~i~~~i~~~~p~aiviv~tNPvd~~-------t~~~~~~~~-----~~~~~~~~k 187 (289)
+|+.......+ ..+++..|+.....+++.+.+...-..++++|.-...- .....|-.+ .....+|..
T Consensus 87 ~A~~~~~~~~~~~~~~~~~nv~g~~~ll~a~~~~~~~~~~v~~SS~~~~g~~~~~~~~~~~~E~~~~~~~~~~~~~~p~~ 166 (338)
T PLN00198 87 VATPVNFASEDPENDMIKPAIQGVHNVLKACAKAKSVKRVILTSSAAAVSINKLSGTGLVMNEKNWTDVEFLTSEKPPTW 166 (338)
T ss_pred eCCCCccCCCChHHHHHHHHHHHHHHHHHHHHhcCCccEEEEeecceeeeccCCCCCCceeccccCCchhhhhhcCCccc
Confidence 99853221112 23456789999999999988764222444443311000 000000000 000123444
Q ss_pred EEEeeeccHHHHHHHHHHHcCCCCccee-eeEEccc
Q 022947 188 LLGVTMLDVVRANTFVAEVLGLDPREVD-VPVVGGH 222 (289)
Q Consensus 188 viG~t~lds~R~~~~lA~~l~v~~~~V~-~~V~G~h 222 (289)
.+|.+.+...++....++..+++...++ ..|.|.+
T Consensus 167 ~Y~~sK~~~E~~~~~~~~~~~~~~~~~R~~~vyGp~ 202 (338)
T PLN00198 167 GYPASKTLAEKAAWKFAEENNIDLITVIPTLMAGPS 202 (338)
T ss_pred hhHHHHHHHHHHHHHHHHhcCceEEEEeCCceECCC
Confidence 5565554444555556677788777777 4488875
No 65
>PF02719 Polysacc_synt_2: Polysaccharide biosynthesis protein; InterPro: IPR003869 This domain is found in diverse bacterial polysaccharide biosynthesis proteins including the CapD protein from Staphylococcus aureus [], the WalL protein, mannosyl-transferase [], and several putative epimerases. The CapD protein is required for biosynthesis of type 1 capsular polysaccharide.; GO: 0009058 biosynthetic process; PDB: 3PVZ_C 2GN8_B 2GN4_A 2GNA_B 2GN6_A 2GN9_A.
Probab=98.53 E-value=4.5e-08 Score=90.25 Aligned_cols=163 Identities=19% Similarity=0.172 Sum_probs=93.7
Q ss_pred EEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCC--chhHHhhhhcccCCceEEE--------EecCCCHHhhhC--CCC
Q 022947 49 VAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTNAVVRG--------FLGQQQLEDALT--GMD 116 (289)
Q Consensus 49 I~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~--~~g~~~DL~~~~~~~~v~~--------~~~t~d~~eal~--~aD 116 (289)
|.|+||+|++|+.++..|+..+. .+|+++|+++ ......++.......+++. +.+...+..+++ +.|
T Consensus 1 VLVTGa~GSIGseL~rql~~~~p-~~lil~d~~E~~l~~l~~~l~~~~~~~~v~~~~~~vigDvrd~~~l~~~~~~~~pd 79 (293)
T PF02719_consen 1 VLVTGAGGSIGSELVRQLLRYGP-KKLILFDRDENKLYELERELRSRFPDPKVRFEIVPVIGDVRDKERLNRIFEEYKPD 79 (293)
T ss_dssp EEEETTTSHHHHHHHHHHHCCB--SEEEEEES-HHHHHHHHHHCHHHC--TTCEEEEE--CTSCCHHHHHHHHTT--T-S
T ss_pred CEEEccccHHHHHHHHHHHhcCC-CeEEEeCCChhHHHHHHHHHhhcccccCcccccCceeecccCHHHHHHHHhhcCCC
Confidence 67999999999999999988875 5899999998 2223344421111111211 111123456677 999
Q ss_pred EEEEcCCCCCCC--CCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEec----CCCcccHHHHHHHHHHhCCCCCCcEEE
Q 022947 117 IVIIPAGVPRKP--GMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLIS----NPVNSTVPIAAEVFKKVGTYDPKRLLG 190 (289)
Q Consensus 117 iVIitag~~~~~--g~~r~d~~~~N~~i~~~i~~~i~~~~p~aiviv~t----NPvd~~t~~~~~~~~~~~~~~~~kviG 190 (289)
+||++|....-+ ...-.+.+..|+-..+++++...++..+-+|.+.| ||.++|-
T Consensus 80 iVfHaAA~KhVpl~E~~p~eav~tNv~GT~nv~~aa~~~~v~~~v~ISTDKAv~PtnvmG-------------------- 139 (293)
T PF02719_consen 80 IVFHAAALKHVPLMEDNPFEAVKTNVLGTQNVAEAAIEHGVERFVFISTDKAVNPTNVMG-------------------- 139 (293)
T ss_dssp EEEE------HHHHCCCHHHHHHHHCHHHHHHHHHHHHTT-SEEEEEEECGCSS--SHHH--------------------
T ss_pred EEEEChhcCCCChHHhCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEccccccCCCCcHHH--------------------
Confidence 999998753222 22346678899999999999999998887777775 5666653
Q ss_pred eeeccHHHHHHHHHHHc---CCCCccee-eeEEcccCCCeeeeecccc
Q 022947 191 VTMLDVVRANTFVAEVL---GLDPREVD-VPVVGGHAGVTILPLLSQV 234 (289)
Q Consensus 191 ~t~lds~R~~~~lA~~l---~v~~~~V~-~~V~G~hg~~~~vp~~S~~ 234 (289)
.|..=..++-...+... +.....|+ +-|+|..| |.+|.|...
T Consensus 140 atKrlaE~l~~~~~~~~~~~~t~f~~VRFGNVlgS~G--SVip~F~~Q 185 (293)
T PF02719_consen 140 ATKRLAEKLVQAANQYSGNSDTKFSSVRFGNVLGSRG--SVIPLFKKQ 185 (293)
T ss_dssp HHHHHHHHHHHHHCCTSSSS--EEEEEEE-EETTGTT--SCHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhCCCCCcEEEEEEecceecCCC--cHHHHHHHH
Confidence 22111222222222222 12234455 66999998 589988753
No 66
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=98.52 E-value=8.4e-07 Score=81.84 Aligned_cols=117 Identities=15% Similarity=0.265 Sum_probs=75.2
Q ss_pred CEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCc-hhHHhh--------hh---cccC---------CceEEEEecC
Q 022947 47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT-PGVTAD--------IS---HMDT---------NAVVRGFLGQ 105 (289)
Q Consensus 47 ~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~-~g~~~D--------L~---~~~~---------~~~v~~~~~t 105 (289)
+||+|||+ |.+|..++..++..|+ +|+++|+++. .....+ +. +... ..++. .+
T Consensus 4 ~~I~ViGa-G~mG~~iA~~la~~G~--~V~l~d~~~~~l~~~~~~i~~~~~~l~~~~~~g~~~~~~~~~~~~~i~---~~ 77 (291)
T PRK06035 4 KVIGVVGS-GVMGQGIAQVFARTGY--DVTIVDVSEEILKNAMELIESGPYGLRNLVEKGKMSEDEAKAIMARIR---TS 77 (291)
T ss_pred cEEEEECc-cHHHHHHHHHHHhcCC--eEEEEeCCHHHHHHHHHHHHhhhhhHHHHHHcCCCCHHHHHHHHhCcE---ee
Confidence 58999998 9999999999999998 9999999872 111111 11 1000 01222 23
Q ss_pred CCHHhhhCCCCEEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCC-CcEEEEecCCCcccHHHHHHHHHHhCCCC
Q 022947 106 QQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCP-KAIVNLISNPVNSTVPIAAEVFKKVGTYD 184 (289)
Q Consensus 106 ~d~~eal~~aDiVIitag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p-~aiviv~tNPvd~~t~~~~~~~~~~~~~~ 184 (289)
+++ +++++||+||++.. .+.+..+++.+.+.++++ ++++ +||....... ++.. .. -.
T Consensus 78 ~~~-~~~~~aDlVieav~--------------e~~~~k~~~~~~l~~~~~~~~il--~S~tsg~~~~---~la~-~~-~~ 135 (291)
T PRK06035 78 TSY-ESLSDADFIVEAVP--------------EKLDLKRKVFAELERNVSPETII--ASNTSGIMIA---EIAT-AL-ER 135 (291)
T ss_pred CCH-HHhCCCCEEEEcCc--------------CcHHHHHHHHHHHHhhCCCCeEE--EEcCCCCCHH---HHHh-hc-CC
Confidence 466 67999999999852 245667788888888874 5655 4666654332 2222 22 23
Q ss_pred CCcEEEe
Q 022947 185 PKRLLGV 191 (289)
Q Consensus 185 ~~kviG~ 191 (289)
+.|++|+
T Consensus 136 ~~r~ig~ 142 (291)
T PRK06035 136 KDRFIGM 142 (291)
T ss_pred cccEEEE
Confidence 5678887
No 67
>TIGR02622 CDP_4_6_dhtase CDP-glucose 4,6-dehydratase. Members of this protein family are CDP-glucose 4,6-dehydratase from a variety of Gram-negative and Gram-positive bacteria. Members typically are encoded next to a gene that encodes a glucose-1-phosphate cytidylyltransferase, which produces the substrate, CDP-D-glucose, used by this enzyme to produce CDP-4-keto-6-deoxyglucose.
Probab=98.45 E-value=5.5e-06 Score=77.91 Aligned_cols=176 Identities=14% Similarity=0.039 Sum_probs=97.0
Q ss_pred CCCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCch-hHHhhhhcccCCce-EE-EEecCCCHHhhhCC--CCEEE
Q 022947 45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP-GVTADISHMDTNAV-VR-GFLGQQQLEDALTG--MDIVI 119 (289)
Q Consensus 45 ~~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~-g~~~DL~~~~~~~~-v~-~~~~t~d~~eal~~--aDiVI 119 (289)
+.++|.|+||+|++|++++..|++.|. +|+.+|++... ....+......... +. ......++.+.+++ .|+||
T Consensus 3 ~~k~ilItGatG~IG~~l~~~L~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~vi 80 (349)
T TIGR02622 3 QGKKVLVTGHTGFKGSWLSLWLLELGA--EVYGYSLDPPTSPNLFELLNLAKKIEDHFGDIRDAAKLRKAIAEFKPEIVF 80 (349)
T ss_pred CCCEEEEECCCChhHHHHHHHHHHCCC--EEEEEeCCCccchhHHHHHhhcCCceEEEccCCCHHHHHHHHhhcCCCEEE
Confidence 457999999999999999999999997 89999987621 11111111110111 11 11111234445554 59999
Q ss_pred EcCCCCCCC--CCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecCCCcccHHHHHHHHHHhCCCCCCcEEEeeeccHH
Q 022947 120 IPAGVPRKP--GMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGVTMLDVV 197 (289)
Q Consensus 120 itag~~~~~--g~~r~d~~~~N~~i~~~i~~~i~~~~p~aiviv~tNPvd~~t~~~~~~~~~~~~~~~~kviG~t~lds~ 197 (289)
++|+.+... ..+....+..|+.....+++.+.+.+....++++|...-.-..-...-+.+....++...+|.+..-..
T Consensus 81 h~A~~~~~~~~~~~~~~~~~~N~~g~~~ll~a~~~~~~~~~iv~~SS~~vyg~~~~~~~~~e~~~~~p~~~Y~~sK~~~e 160 (349)
T TIGR02622 81 HLAAQPLVRKSYADPLETFETNVMGTVNLLEAIRAIGSVKAVVNVTSDKCYRNDEWVWGYRETDPLGGHDPYSSSKACAE 160 (349)
T ss_pred ECCcccccccchhCHHHHHHHhHHHHHHHHHHHHhcCCCCEEEEEechhhhCCCCCCCCCccCCCCCCCCcchhHHHHHH
Confidence 999854221 112345678899999999998877653334555554210000000000000112344556676655444
Q ss_pred HHHHHHHHHc-------CCCCccee-eeEEccc
Q 022947 198 RANTFVAEVL-------GLDPREVD-VPVVGGH 222 (289)
Q Consensus 198 R~~~~lA~~l-------~v~~~~V~-~~V~G~h 222 (289)
++-..+++.+ +++...++ ..|+|.+
T Consensus 161 ~~~~~~~~~~~~~~~~~~i~~~~lR~~~vyGp~ 193 (349)
T TIGR02622 161 LVIASYRSSFFGVANFHGIKIASARAGNVIGGG 193 (349)
T ss_pred HHHHHHHHHhhcccccCCCcEEEEccCcccCCC
Confidence 5555555554 56666666 4577764
No 68
>KOG1502 consensus Flavonol reductase/cinnamoyl-CoA reductase [Defense mechanisms]
Probab=98.45 E-value=2.5e-06 Score=79.75 Aligned_cols=120 Identities=18% Similarity=0.117 Sum_probs=83.2
Q ss_pred CCCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCC-c-h--hHHhhhhcccCCceEEEE----ecCCCHHhhhCCCC
Q 022947 45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-T-P--GVTADISHMDTNAVVRGF----LGQQQLEDALTGMD 116 (289)
Q Consensus 45 ~~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~-~-~--g~~~DL~~~~~~~~v~~~----~~t~d~~eal~~aD 116 (289)
..++|+|+||+||||+.+...|+++|+ +|+-.=+++ . + ....+|.... .++..+ ...+.+.+++++||
T Consensus 5 ~~~~VcVTGAsGfIgswivk~LL~rGY--~V~gtVR~~~~~k~~~~L~~l~~a~--~~l~l~~aDL~d~~sf~~ai~gcd 80 (327)
T KOG1502|consen 5 EGKKVCVTGASGFIGSWIVKLLLSRGY--TVRGTVRDPEDEKKTEHLRKLEGAK--ERLKLFKADLLDEGSFDKAIDGCD 80 (327)
T ss_pred CCcEEEEeCCchHHHHHHHHHHHhCCC--EEEEEEcCcchhhhHHHHHhcccCc--ccceEEeccccccchHHHHHhCCC
Confidence 457999999999999999999999999 676665554 1 1 2344555332 122322 22346789999999
Q ss_pred EEEEcCCCCCCCCC-chhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecCCCccc
Q 022947 117 IVIIPAGVPRKPGM-TRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNST 169 (289)
Q Consensus 117 iVIitag~~~~~g~-~r~d~~~~N~~i~~~i~~~i~~~~p~aiviv~tNPvd~~ 169 (289)
.||++|....-... .-.+++.-.++..+.+.+.++++. ...=+|+|+....+
T Consensus 81 gVfH~Asp~~~~~~~~e~~li~pav~Gt~nVL~ac~~~~-sVkrvV~TSS~aAv 133 (327)
T KOG1502|consen 81 GVFHTASPVDFDLEDPEKELIDPAVKGTKNVLEACKKTK-SVKRVVYTSSTAAV 133 (327)
T ss_pred EEEEeCccCCCCCCCcHHhhhhHHHHHHHHHHHHHhccC-CcceEEEeccHHHh
Confidence 99999865322222 234688899999999999999987 44444566655433
No 69
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=98.44 E-value=7.5e-07 Score=74.99 Aligned_cols=94 Identities=26% Similarity=0.344 Sum_probs=63.1
Q ss_pred EEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchhHHhhhhccc--------CCceEEEEecCCCHHhhhCCCCEEE
Q 022947 48 KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMD--------TNAVVRGFLGQQQLEDALTGMDIVI 119 (289)
Q Consensus 48 KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g~~~DL~~~~--------~~~~v~~~~~t~d~~eal~~aDiVI 119 (289)
||+|+|| |..|.++|..|+.+|+ +|.|+++++.....+.-.+.. ....+.. ++|+++++++||+||
T Consensus 1 KI~ViGa-G~~G~AlA~~la~~g~--~V~l~~~~~~~~~~i~~~~~n~~~~~~~~l~~~i~~---t~dl~~a~~~ad~Ii 74 (157)
T PF01210_consen 1 KIAVIGA-GNWGTALAALLADNGH--EVTLWGRDEEQIEEINETRQNPKYLPGIKLPENIKA---TTDLEEALEDADIII 74 (157)
T ss_dssp EEEEESS-SHHHHHHHHHHHHCTE--EEEEETSCHHHHHHHHHHTSETTTSTTSBEETTEEE---ESSHHHHHTT-SEEE
T ss_pred CEEEECc-CHHHHHHHHHHHHcCC--EEEEEeccHHHHHHHHHhCCCCCCCCCcccCccccc---ccCHHHHhCcccEEE
Confidence 8999999 9999999999999997 999999876211111111211 0123332 568999999999999
Q ss_pred EcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhC-CCcEEEEec
Q 022947 120 IPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCC-PKAIVNLIS 163 (289)
Q Consensus 120 itag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~-p~aiviv~t 163 (289)
++. | ....++++++++.+- ++..+++++
T Consensus 75 iav--P--------------s~~~~~~~~~l~~~l~~~~~ii~~~ 103 (157)
T PF01210_consen 75 IAV--P--------------SQAHREVLEQLAPYLKKGQIIISAT 103 (157)
T ss_dssp E-S-----------------GGGHHHHHHHHTTTSHTT-EEEETS
T ss_pred ecc--c--------------HHHHHHHHHHHhhccCCCCEEEEec
Confidence 984 2 334678888888887 455555443
No 70
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=98.44 E-value=1.1e-06 Score=80.96 Aligned_cols=101 Identities=22% Similarity=0.291 Sum_probs=65.9
Q ss_pred CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCc-hhHHh-----hhhc----ccC--------CceEEEEecCCC
Q 022947 46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT-PGVTA-----DISH----MDT--------NAVVRGFLGQQQ 107 (289)
Q Consensus 46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~-~g~~~-----DL~~----~~~--------~~~v~~~~~t~d 107 (289)
.+||+|||+ |.+|..+|..++..|+ +|+++|+++. ..... .+.. ... ..++.. +++
T Consensus 4 ~~kI~vIGa-G~mG~~iA~~la~~G~--~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~---~~~ 77 (292)
T PRK07530 4 IKKVGVIGA-GQMGNGIAHVCALAGY--DVLLNDVSADRLEAGLATINGNLARQVAKGKISEEARAAALARIST---ATD 77 (292)
T ss_pred CCEEEEECC-cHHHHHHHHHHHHCCC--eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEe---eCC
Confidence 468999998 9999999999999998 9999999861 11111 0100 000 012332 346
Q ss_pred HHhhhCCCCEEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhC-CCcEEEEecCCCccc
Q 022947 108 LEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCC-PKAIVNLISNPVNST 169 (289)
Q Consensus 108 ~~eal~~aDiVIitag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~-p~aiviv~tNPvd~~ 169 (289)
+ +++++||+||++.. .+....+.+.+.+.+++ |++++ +||.+.+-
T Consensus 78 ~-~~~~~aD~Vieavp--------------e~~~~k~~~~~~l~~~~~~~~ii--~s~ts~~~ 123 (292)
T PRK07530 78 L-EDLADCDLVIEAAT--------------EDETVKRKIFAQLCPVLKPEAIL--ATNTSSIS 123 (292)
T ss_pred H-HHhcCCCEEEEcCc--------------CCHHHHHHHHHHHHhhCCCCcEE--EEcCCCCC
Confidence 6 57899999999852 23344556667787776 56655 36666543
No 71
>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC. This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.
Probab=98.43 E-value=1.2e-06 Score=87.07 Aligned_cols=120 Identities=23% Similarity=0.313 Sum_probs=78.9
Q ss_pred CCCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCc---hhH--Hh----hhhccc---------CCceEEEEecCC
Q 022947 45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT---PGV--TA----DISHMD---------TNAVVRGFLGQQ 106 (289)
Q Consensus 45 ~~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~---~g~--~~----DL~~~~---------~~~~v~~~~~t~ 106 (289)
+.+||+|||+ |.+|+.+|..++..|+ +|+++|+++. .+. .. .+.... ...+++. ++
T Consensus 4 ~~~kV~VIGa-G~MG~gIA~~la~aG~--~V~l~d~~~e~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~---~~ 77 (503)
T TIGR02279 4 NVVTVAVIGA-GAMGAGIAQVAASAGH--QVLLYDIRAEALARAIAGIEARLNSLVTKGKLTAEECERTLKRLIP---VT 77 (503)
T ss_pred CccEEEEECc-CHHHHHHHHHHHhCCC--eEEEEeCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHhccEE---eC
Confidence 4468999998 9999999999999998 9999999871 110 00 111110 0122332 45
Q ss_pred CHHhhhCCCCEEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecCCCcccHHHHHHHHHHhCCCCCC
Q 022947 107 QLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPK 186 (289)
Q Consensus 107 d~~eal~~aDiVIitag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~aiviv~tNPvd~~t~~~~~~~~~~~~~~~~ 186 (289)
++ +++++||+||.+. .++..+.+.+...+.+++|...+ ++||.+.+-.. +... .. -.|.
T Consensus 78 ~~-~~l~~aDlVIEav--------------~E~~~vK~~vf~~l~~~~~~~~I-lasnTStl~i~---~iA~-~~-~~p~ 136 (503)
T TIGR02279 78 DL-HALADAGLVIEAI--------------VENLEVKKALFAQLEELCPADTI-IASNTSSLSIT---AIAA-GL-ARPE 136 (503)
T ss_pred CH-HHhCCCCEEEEcC--------------cCcHHHHHHHHHHHHhhCCCCeE-EEECCCCCCHH---HHHH-hc-Cccc
Confidence 67 6789999999984 34677888888889998854433 36888775432 1112 22 2356
Q ss_pred cEEEe
Q 022947 187 RLLGV 191 (289)
Q Consensus 187 kviG~ 191 (289)
|++|+
T Consensus 137 r~~G~ 141 (503)
T TIGR02279 137 RVAGL 141 (503)
T ss_pred ceEEE
Confidence 77776
No 72
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=98.42 E-value=1.1e-06 Score=80.98 Aligned_cols=100 Identities=20% Similarity=0.239 Sum_probs=65.5
Q ss_pred CEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCc-hhHH----hhhhccc-------------CCceEEEEecCCCH
Q 022947 47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT-PGVT----ADISHMD-------------TNAVVRGFLGQQQL 108 (289)
Q Consensus 47 ~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~-~g~~----~DL~~~~-------------~~~~v~~~~~t~d~ 108 (289)
+||+|||+ |.+|..+|..|+..|+ +|+++|+++. .... .++.... ....+. .++++
T Consensus 2 ~~V~VIG~-G~mG~~iA~~la~~G~--~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~---~~~~~ 75 (288)
T PRK09260 2 EKLVVVGA-GVMGRGIAYVFAVSGF--QTTLVDIKQEQLESAQQEIASIFEQGVARGKLTEAARQAALARLS---YSLDL 75 (288)
T ss_pred cEEEEECc-cHHHHHHHHHHHhCCC--cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeE---EeCcH
Confidence 48999999 9999999999999998 9999999871 1111 1110000 011233 24577
Q ss_pred HhhhCCCCEEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhC-CCcEEEEecCCCcc
Q 022947 109 EDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCC-PKAIVNLISNPVNS 168 (289)
Q Consensus 109 ~eal~~aDiVIitag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~-p~aiviv~tNPvd~ 168 (289)
++++++||+||.+.. .+..+.+.+...+.+++ |++++ ++|.+.+
T Consensus 76 ~~~~~~aD~Vi~avp--------------e~~~~k~~~~~~l~~~~~~~~il--~~~tSt~ 120 (288)
T PRK09260 76 KAAVADADLVIEAVP--------------EKLELKKAVFETADAHAPAECYI--ATNTSTM 120 (288)
T ss_pred HHhhcCCCEEEEecc--------------CCHHHHHHHHHHHHhhCCCCcEE--EEcCCCC
Confidence 789999999999852 23455566666777777 45544 4555543
No 73
>COG1086 Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=98.42 E-value=1.7e-06 Score=85.43 Aligned_cols=167 Identities=20% Similarity=0.220 Sum_probs=108.8
Q ss_pred CCCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCc--hhHHhhhhcccCCceEEEE----ecCCCHHhhhCC--CC
Q 022947 45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTNAVVRGF----LGQQQLEDALTG--MD 116 (289)
Q Consensus 45 ~~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~--~g~~~DL~~~~~~~~v~~~----~~t~d~~eal~~--aD 116 (289)
..++|.|+||+|++|+.+...++..+. .+|+++|.++. .....+|.......+++.+ .+.+.+++++++ .|
T Consensus 249 ~gK~vLVTGagGSiGsel~~qil~~~p-~~i~l~~~~E~~~~~i~~el~~~~~~~~~~~~igdVrD~~~~~~~~~~~kvd 327 (588)
T COG1086 249 TGKTVLVTGGGGSIGSELCRQILKFNP-KEIILFSRDEYKLYLIDMELREKFPELKLRFYIGDVRDRDRVERAMEGHKVD 327 (588)
T ss_pred CCCEEEEeCCCCcHHHHHHHHHHhcCC-CEEEEecCchHHHHHHHHHHHhhCCCcceEEEecccccHHHHHHHHhcCCCc
Confidence 356899999999999999988888764 59999999982 2233444442112233322 122345677888 99
Q ss_pred EEEEcCCCCCCCC--CchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEec----CCCcccHHHHHHHHHHhCCCCCCcEEE
Q 022947 117 IVIIPAGVPRKPG--MTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLIS----NPVNSTVPIAAEVFKKVGTYDPKRLLG 190 (289)
Q Consensus 117 iVIitag~~~~~g--~~r~d~~~~N~~i~~~i~~~i~~~~p~aiviv~t----NPvd~~t~~~~~~~~~~~~~~~~kviG 190 (289)
+|+++|....-|- .+-.+-...|+-..+++++...++.-+.+|++.| ||.|+| |
T Consensus 328 ~VfHAAA~KHVPl~E~nP~Eai~tNV~GT~nv~~aa~~~~V~~~V~iSTDKAV~PtNvm--------------------G 387 (588)
T COG1086 328 IVFHAAALKHVPLVEYNPEEAIKTNVLGTENVAEAAIKNGVKKFVLISTDKAVNPTNVM--------------------G 387 (588)
T ss_pred eEEEhhhhccCcchhcCHHHHHHHhhHhHHHHHHHHHHhCCCEEEEEecCcccCCchHh--------------------h
Confidence 9999998654443 2345677889999999999999998787887765 666655 3
Q ss_pred eeeccHHHHHHHHHHHcC---CCCccee-eeEEcccCCCeeeeecccc
Q 022947 191 VTMLDVVRANTFVAEVLG---LDPREVD-VPVVGGHAGVTILPLLSQV 234 (289)
Q Consensus 191 ~t~lds~R~~~~lA~~l~---v~~~~V~-~~V~G~hg~~~~vp~~S~~ 234 (289)
.|..-...+-...++..+ -...-|+ +-|+|..| +.+|+|...
T Consensus 388 aTKr~aE~~~~a~~~~~~~~~T~f~~VRFGNVlGSrG--SViPlFk~Q 433 (588)
T COG1086 388 ATKRLAEKLFQAANRNVSGTGTRFCVVRFGNVLGSRG--SVIPLFKKQ 433 (588)
T ss_pred HHHHHHHHHHHHHhhccCCCCcEEEEEEecceecCCC--CCHHHHHHH
Confidence 332111111222222121 1223344 66999998 589998753
No 74
>PLN02695 GDP-D-mannose-3',5'-epimerase
Probab=98.42 E-value=2e-06 Score=81.96 Aligned_cols=170 Identities=15% Similarity=0.091 Sum_probs=99.0
Q ss_pred CCCCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchhHHhhhhcccCCceEE--EEecCCCHHhhhCCCCEEEEc
Q 022947 44 SPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVR--GFLGQQQLEDALTGMDIVIIP 121 (289)
Q Consensus 44 ~~~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g~~~DL~~~~~~~~v~--~~~~t~d~~eal~~aDiVIit 121 (289)
...|||.|+|++|+||++++..|...|+ +|..+|+.... ...+ ........ ......++.++++++|+||++
T Consensus 19 ~~~~~IlVtGgtGfIG~~l~~~L~~~G~--~V~~v~r~~~~-~~~~---~~~~~~~~~~Dl~d~~~~~~~~~~~D~Vih~ 92 (370)
T PLN02695 19 SEKLRICITGAGGFIASHIARRLKAEGH--YIIASDWKKNE-HMSE---DMFCHEFHLVDLRVMENCLKVTKGVDHVFNL 92 (370)
T ss_pred CCCCEEEEECCccHHHHHHHHHHHhCCC--EEEEEEecccc-cccc---ccccceEEECCCCCHHHHHHHHhCCCEEEEc
Confidence 3567999999999999999999999998 99999975411 0000 00000110 011112244557899999999
Q ss_pred CCCCCCCC---CchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecCCC-----cccH---HHHHHHHHHhCCCCCCcEEE
Q 022947 122 AGVPRKPG---MTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPV-----NSTV---PIAAEVFKKVGTYDPKRLLG 190 (289)
Q Consensus 122 ag~~~~~g---~~r~d~~~~N~~i~~~i~~~i~~~~p~aiviv~tNPv-----d~~t---~~~~~~~~~~~~~~~~kviG 190 (289)
|+.....+ ......+..|+.....+++.+++...+.+|. +|... .... .+ .| .....++|...+|
T Consensus 93 Aa~~~~~~~~~~~~~~~~~~N~~~t~nll~aa~~~~vk~~V~-~SS~~vYg~~~~~~~~~~~-~E--~~~~p~~p~s~Yg 168 (370)
T PLN02695 93 AADMGGMGFIQSNHSVIMYNNTMISFNMLEAARINGVKRFFY-ASSACIYPEFKQLETNVSL-KE--SDAWPAEPQDAYG 168 (370)
T ss_pred ccccCCccccccCchhhHHHHHHHHHHHHHHHHHhCCCEEEE-eCchhhcCCccccCcCCCc-Cc--ccCCCCCCCCHHH
Confidence 87432111 1223346789999999999998876554443 43321 0000 00 00 0000233444566
Q ss_pred eeeccHHHHHHHHHHHcCCCCccee-eeEEcccC
Q 022947 191 VTMLDVVRANTFVAEVLGLDPREVD-VPVVGGHA 223 (289)
Q Consensus 191 ~t~lds~R~~~~lA~~l~v~~~~V~-~~V~G~hg 223 (289)
.+.....++-...++..|++..-++ ..++|.++
T Consensus 169 ~sK~~~E~~~~~~~~~~g~~~~ilR~~~vyGp~~ 202 (370)
T PLN02695 169 LEKLATEELCKHYTKDFGIECRIGRFHNIYGPFG 202 (370)
T ss_pred HHHHHHHHHHHHHHHHhCCCEEEEEECCccCCCC
Confidence 6555555554555677788877777 45888764
No 75
>PLN02427 UDP-apiose/xylose synthase
Probab=98.42 E-value=2.6e-06 Score=81.24 Aligned_cols=116 Identities=16% Similarity=0.096 Sum_probs=72.0
Q ss_pred CCCEEEEEcCCCccHHHHHHHHHhC-CCccEEEEEeCCCch-hHHhhhhcccCCceEEEEe----cCCCHHhhhCCCCEE
Q 022947 45 PGFKVAVLGAAGGIGQPLAMLMKIN-PLVSVLHLYDVVNTP-GVTADISHMDTNAVVRGFL----GQQQLEDALTGMDIV 118 (289)
Q Consensus 45 ~~~KI~IIGaaG~VGs~la~~L~~~-g~~~eI~LvD~~~~~-g~~~DL~~~~~~~~v~~~~----~t~d~~eal~~aDiV 118 (289)
++|||.|+||+||+|++++..|+.. +. +|+.+|.+... ....+.........+..+. ...++.++++++|+|
T Consensus 13 ~~~~VlVTGgtGfIGs~lv~~L~~~~g~--~V~~l~r~~~~~~~l~~~~~~~~~~~~~~~~~Dl~d~~~l~~~~~~~d~V 90 (386)
T PLN02427 13 KPLTICMIGAGGFIGSHLCEKLMTETPH--KVLALDVYNDKIKHLLEPDTVPWSGRIQFHRINIKHDSRLEGLIKMADLT 90 (386)
T ss_pred cCcEEEEECCcchHHHHHHHHHHhcCCC--EEEEEecCchhhhhhhccccccCCCCeEEEEcCCCChHHHHHHhhcCCEE
Confidence 3679999999999999999999887 46 89999975421 1111110000011222221 122456778899999
Q ss_pred EEcCCCCCCC--CCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecC
Q 022947 119 IIPAGVPRKP--GMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISN 164 (289)
Q Consensus 119 Iitag~~~~~--g~~r~d~~~~N~~i~~~i~~~i~~~~p~aiviv~tN 164 (289)
|++|+..... .....+.+..|+.....+++..++.. . .++++|.
T Consensus 91 iHlAa~~~~~~~~~~~~~~~~~n~~gt~~ll~aa~~~~-~-r~v~~SS 136 (386)
T PLN02427 91 INLAAICTPADYNTRPLDTIYSNFIDALPVVKYCSENN-K-RLIHFST 136 (386)
T ss_pred EEcccccChhhhhhChHHHHHHHHHHHHHHHHHHHhcC-C-EEEEEee
Confidence 9999864221 11223456678888888888877665 3 4555553
No 76
>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated
Probab=98.41 E-value=1.3e-06 Score=86.86 Aligned_cols=118 Identities=21% Similarity=0.273 Sum_probs=77.9
Q ss_pred CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCc---hh--HHhhh----hccc---------CCceEEEEecCCC
Q 022947 46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT---PG--VTADI----SHMD---------TNAVVRGFLGQQQ 107 (289)
Q Consensus 46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~---~g--~~~DL----~~~~---------~~~~v~~~~~t~d 107 (289)
..||+|||+ |.+|+.+|..++..|+ +|+++|+++. .+ ...++ .... ...++.. +++
T Consensus 7 i~~V~VIGa-G~MG~gIA~~la~aG~--~V~l~D~~~e~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~---~~~ 80 (507)
T PRK08268 7 IATVAVIGA-GAMGAGIAQVAAQAGH--TVLLYDARAGAAAAARDGIAARLAKLVEKGKLTAEQADAALARLRP---VEA 80 (507)
T ss_pred CCEEEEECC-CHHHHHHHHHHHhCCC--eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEE---eCC
Confidence 358999999 9999999999999998 9999999871 11 11111 1100 0112343 346
Q ss_pred HHhhhCCCCEEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhC-CCcEEEEecCCCcccHHHHHHHHHHhCCCCCC
Q 022947 108 LEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCC-PKAIVNLISNPVNSTVPIAAEVFKKVGTYDPK 186 (289)
Q Consensus 108 ~~eal~~aDiVIitag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~-p~aiviv~tNPvd~~t~~~~~~~~~~~~~~~~ 186 (289)
+ +++++||+||.+. .++.++.+.+...+.+.+ |++++ +||.+.+-.. + +.... -.|+
T Consensus 81 ~-~~~~~aDlViEav--------------~E~~~vK~~vf~~l~~~~~~~ail--asntStl~i~---~-la~~~-~~p~ 138 (507)
T PRK08268 81 L-ADLADCDLVVEAI--------------VERLDVKQALFAQLEAIVSPDCIL--ATNTSSLSIT---A-IAAAL-KHPE 138 (507)
T ss_pred H-HHhCCCCEEEEcC--------------cccHHHHHHHHHHHHhhCCCCcEE--EECCCCCCHH---H-HHhhc-CCcc
Confidence 6 5689999999984 346777888888899987 56655 5676654321 1 12223 2467
Q ss_pred cEEEe
Q 022947 187 RLLGV 191 (289)
Q Consensus 187 kviG~ 191 (289)
|++|+
T Consensus 139 r~~G~ 143 (507)
T PRK08268 139 RVAGL 143 (507)
T ss_pred cEEEE
Confidence 88887
No 77
>TIGR03589 PseB UDP-N-acetylglucosamine 4,6-dehydratase. This enzyme catalyzes the first step in the biosynthesis of pseudaminic acid, the conversion of UDP-N-acetylglucosamine to UDP-4-keto-6-deoxy-N-acetylglucosamine. These sequences are members of the broader pfam01073 (3-beta hydroxysteroid dehydrogenase/isomerase family) family.
Probab=98.39 E-value=3.7e-06 Score=78.57 Aligned_cols=113 Identities=17% Similarity=0.202 Sum_probs=74.4
Q ss_pred CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchh-H-HhhhhcccCCceEEEE----ecCCCHHhhhCCCCEEE
Q 022947 46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPG-V-TADISHMDTNAVVRGF----LGQQQLEDALTGMDIVI 119 (289)
Q Consensus 46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g-~-~~DL~~~~~~~~v~~~----~~t~d~~eal~~aDiVI 119 (289)
.++|.|+||+|++|++++..|+..+...+|+++|++.... . ..++.. ..+..+ ....++.+++++.|+||
T Consensus 4 ~k~vLVTGatG~IG~~l~~~L~~~g~~~~V~~~~r~~~~~~~~~~~~~~----~~~~~v~~Dl~d~~~l~~~~~~iD~Vi 79 (324)
T TIGR03589 4 NKSILITGGTGSFGKAFISRLLENYNPKKIIIYSRDELKQWEMQQKFPA----PCLRFFIGDVRDKERLTRALRGVDYVV 79 (324)
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHhCCCcEEEEEcCChhHHHHHHHHhCC----CcEEEEEccCCCHHHHHHHHhcCCEEE
Confidence 4689999999999999999988876323899998765211 1 111111 122211 11234556778999999
Q ss_pred EcCCCCCCC--CCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEec
Q 022947 120 IPAGVPRKP--GMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLIS 163 (289)
Q Consensus 120 itag~~~~~--g~~r~d~~~~N~~i~~~i~~~i~~~~p~aiviv~t 163 (289)
++||....+ ..+..+.+..|+.....+++.+.+.... .++++|
T Consensus 80 h~Ag~~~~~~~~~~~~~~~~~Nv~g~~~ll~aa~~~~~~-~iV~~S 124 (324)
T TIGR03589 80 HAAALKQVPAAEYNPFECIRTNINGAQNVIDAAIDNGVK-RVVALS 124 (324)
T ss_pred ECcccCCCchhhcCHHHHHHHHHHHHHHHHHHHHHcCCC-EEEEEe
Confidence 999864322 2234567889999999999999876543 444444
No 78
>PLN02650 dihydroflavonol-4-reductase
Probab=98.37 E-value=8.2e-06 Score=76.71 Aligned_cols=179 Identities=17% Similarity=0.064 Sum_probs=100.6
Q ss_pred CCCCCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCc-hhHHhhhhcc-cCCceEEEE----ecCCCHHhhhCCCC
Q 022947 43 GSPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT-PGVTADISHM-DTNAVVRGF----LGQQQLEDALTGMD 116 (289)
Q Consensus 43 ~~~~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~-~g~~~DL~~~-~~~~~v~~~----~~t~d~~eal~~aD 116 (289)
++..++|.|+||+|++|++++..|+..|+ +|++++++.. .....++... .....+..+ .....+.+.++++|
T Consensus 2 ~~~~k~iLVTGatGfIGs~l~~~L~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~Dl~d~~~~~~~~~~~d 79 (351)
T PLN02650 2 GSQKETVCVTGASGFIGSWLVMRLLERGY--TVRATVRDPANVKKVKHLLDLPGATTRLTLWKADLAVEGSFDDAIRGCT 79 (351)
T ss_pred CCCCCEEEEeCCcHHHHHHHHHHHHHCCC--EEEEEEcCcchhHHHHHHHhccCCCCceEEEEecCCChhhHHHHHhCCC
Confidence 34566999999999999999999999997 8888887652 1111122111 001122211 11234567788999
Q ss_pred EEEEcCCCCCCCCCc-hhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecCCCccc-----HHHHHHHHH---Hh--CCCCC
Q 022947 117 IVIIPAGVPRKPGMT-RDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNST-----VPIAAEVFK---KV--GTYDP 185 (289)
Q Consensus 117 iVIitag~~~~~g~~-r~d~~~~N~~i~~~i~~~i~~~~p~aiviv~tNPvd~~-----t~~~~~~~~---~~--~~~~~ 185 (289)
+||++|+.......+ ..+.+..|+.....+++.+.+...-..++++|.....- .+...|-.+ .. ...++
T Consensus 80 ~ViH~A~~~~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~~~~~r~v~~SS~~~~~~~~~~~~~~~E~~~~~~~~~~~~~~~ 159 (351)
T PLN02650 80 GVFHVATPMDFESKDPENEVIKPTVNGMLSIMKACAKAKTVRRIVFTSSAGTVNVEEHQKPVYDEDCWSDLDFCRRKKMT 159 (351)
T ss_pred EEEEeCCCCCCCCCCchhhhhhHHHHHHHHHHHHHHhcCCceEEEEecchhhcccCCCCCCccCcccCCchhhhhccccc
Confidence 999998753221111 23567889999999999998865323455444321000 000000000 00 00001
Q ss_pred CcEEEeeeccHHHHHHHHHHHcCCCCccee-eeEEcccC
Q 022947 186 KRLLGVTMLDVVRANTFVAEVLGLDPREVD-VPVVGGHA 223 (289)
Q Consensus 186 ~kviG~t~lds~R~~~~lA~~l~v~~~~V~-~~V~G~hg 223 (289)
...+|.+.+....+-...++..|++...++ ..|+|..-
T Consensus 160 ~~~Y~~sK~~~E~~~~~~~~~~gi~~~ilRp~~v~Gp~~ 198 (351)
T PLN02650 160 GWMYFVSKTLAEKAAWKYAAENGLDFISIIPTLVVGPFI 198 (351)
T ss_pred cchHHHHHHHHHHHHHHHHHHcCCeEEEECCCceECCCC
Confidence 123455544444455556777788777776 55888753
No 79
>TIGR01181 dTDP_gluc_dehyt dTDP-glucose 4,6-dehydratase. This protein is related to UDP-glucose 4-epimerase (GalE) and likewise has an NAD cofactor.
Probab=98.37 E-value=8.2e-06 Score=74.51 Aligned_cols=167 Identities=15% Similarity=0.047 Sum_probs=96.2
Q ss_pred EEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCc---hhHHhhhhcccCCceEEEE----ecCCCHHhhhCC--CCEE
Q 022947 48 KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT---PGVTADISHMDTNAVVRGF----LGQQQLEDALTG--MDIV 118 (289)
Q Consensus 48 KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~---~g~~~DL~~~~~~~~v~~~----~~t~d~~eal~~--aDiV 118 (289)
||.|+||+|++|.+++..|+..+...+|+++|.... .....++... ..+..+ ...+++.+++++ +|+|
T Consensus 1 ~ilItGatG~iG~~l~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~Dl~~~~~~~~~~~~~~~d~v 77 (317)
T TIGR01181 1 RILVTGGAGFIGSNFVRYILNEHPDAEVIVLDKLTYAGNLENLADLEDN---PRYRFVKGDIGDRELVSRLFTEHQPDAV 77 (317)
T ss_pred CEEEEcCCchHHHHHHHHHHHhCCCCEEEEecCCCcchhhhhhhhhccC---CCcEEEEcCCcCHHHHHHHHhhcCCCEE
Confidence 589999999999999998887763238899986431 1111122111 112211 112245566776 8999
Q ss_pred EEcCCCCCC--CCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecCCC-----cccHHHHHHHHHHhCCCCCCcEEEe
Q 022947 119 IIPAGVPRK--PGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPV-----NSTVPIAAEVFKKVGTYDPKRLLGV 191 (289)
Q Consensus 119 Iitag~~~~--~g~~r~d~~~~N~~i~~~i~~~i~~~~p~aiviv~tNPv-----d~~t~~~~~~~~~~~~~~~~kviG~ 191 (289)
|++++.... .......++..|+.....+++.+.+...+..++.+|... ....++ .+....++...+|.
T Consensus 78 i~~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~i~~Ss~~v~g~~~~~~~~-----~e~~~~~~~~~Y~~ 152 (317)
T TIGR01181 78 VHFAAESHVDRSISGPAAFIETNVVGTYTLLEAVRKYWHEFRFHHISTDEVYGDLEKGDAF-----TETTPLAPSSPYSA 152 (317)
T ss_pred EEcccccCchhhhhCHHHHHHHHHHHHHHHHHHHHhcCCCceEEEeeccceeCCCCCCCCc-----CCCCCCCCCCchHH
Confidence 999975421 112234567789999999999988875554565554311 000000 00112334445565
Q ss_pred eeccHHHHHHHHHHHcCCCCccee-eeEEccc
Q 022947 192 TMLDVVRANTFVAEVLGLDPREVD-VPVVGGH 222 (289)
Q Consensus 192 t~lds~R~~~~lA~~l~v~~~~V~-~~V~G~h 222 (289)
+.....++-..+++..+++..-++ ..++|..
T Consensus 153 sK~~~e~~~~~~~~~~~~~~~i~R~~~i~G~~ 184 (317)
T TIGR01181 153 SKAASDHLVRAYHRTYGLPALITRCSNNYGPY 184 (317)
T ss_pred HHHHHHHHHHHHHHHhCCCeEEEEeccccCCC
Confidence 544455555556677777776666 3477754
No 80
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=98.36 E-value=3.5e-06 Score=78.30 Aligned_cols=119 Identities=23% Similarity=0.365 Sum_probs=71.8
Q ss_pred CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCc-hhHHhh-hh---cc----c----CCceEEEEecCCCHHhhh
Q 022947 46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT-PGVTAD-IS---HM----D----TNAVVRGFLGQQQLEDAL 112 (289)
Q Consensus 46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~-~g~~~D-L~---~~----~----~~~~v~~~~~t~d~~eal 112 (289)
.+||+|||+ |.+|..++..|+..|+ +|+++|+++. .....+ +. .. . ...++. .++++.+++
T Consensus 4 ~~~I~vIGa-G~mG~~iA~~l~~~g~--~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~---~~~~~~~~~ 77 (311)
T PRK06130 4 IQNLAIIGA-GTMGSGIAALFARKGL--QVVLIDVMEGALERARGVIERALGVYAPLGIASAGMGRIR---MEAGLAAAV 77 (311)
T ss_pred ccEEEEECC-CHHHHHHHHHHHhCCC--eEEEEECCHHHHHHHHHHHHHHHHHhhhcccHHHHhhceE---EeCCHHHHh
Confidence 468999998 9999999999999997 9999998761 111110 00 00 0 001122 234676789
Q ss_pred CCCCEEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhC-CCcEEEEecCCCcccHHHHHHHHHHhCCCCCCcEEEe
Q 022947 113 TGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCC-PKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGV 191 (289)
Q Consensus 113 ~~aDiVIitag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~-p~aiviv~tNPvd~~t~~~~~~~~~~~~~~~~kviG~ 191 (289)
++||+||++.- .......++...+..++ ++++| +||.+.+-.. ++ .+... .+.+++|+
T Consensus 78 ~~aDlVi~av~--------------~~~~~~~~v~~~l~~~~~~~~ii--~s~tsg~~~~---~l-~~~~~-~~~~~ig~ 136 (311)
T PRK06130 78 SGADLVIEAVP--------------EKLELKRDVFARLDGLCDPDTIF--ATNTSGLPIT---AI-AQAVT-RPERFVGT 136 (311)
T ss_pred ccCCEEEEecc--------------CcHHHHHHHHHHHHHhCCCCcEE--EECCCCCCHH---HH-HhhcC-CcccEEEE
Confidence 99999999852 12344556666677766 45544 4666554322 22 22221 24567776
No 81
>COG0451 WcaG Nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=98.35 E-value=4.6e-06 Score=76.16 Aligned_cols=167 Identities=19% Similarity=0.146 Sum_probs=98.9
Q ss_pred CEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchhHHhhhhcccC-CceEEEEecCCCHHhhhCCC-CEEEEcCCC
Q 022947 47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDT-NAVVRGFLGQQQLEDALTGM-DIVIIPAGV 124 (289)
Q Consensus 47 ~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g~~~DL~~~~~-~~~v~~~~~t~d~~eal~~a-DiVIitag~ 124 (289)
|+|.|+|++|+||++++..|++.|+ +|+.+|+........+ .+... ...+. ......+.+++. |.||++++.
T Consensus 1 ~~ILVtG~tGfiG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~-~~~~~~~~d~~---~~~~~~~~~~~~~d~vih~aa~ 74 (314)
T COG0451 1 MRILVTGGAGFIGSHLVERLLAAGH--DVRGLDRLRDGLDPLL-SGVEFVVLDLT---DRDLVDELAKGVPDAVIHLAAQ 74 (314)
T ss_pred CeEEEEcCcccHHHHHHHHHHhCCC--eEEEEeCCCccccccc-cccceeeeccc---chHHHHHHHhcCCCEEEEcccc
Confidence 3599999999999999999999988 9999998652111111 11100 00111 112234556777 999999987
Q ss_pred CCCCCCch---hhHHHhhHHHHHHHHHHHHHhCCCcEEEEecCCCcccH-H----HHHHHHHHhCCCCCCcEEEeeeccH
Q 022947 125 PRKPGMTR---DDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTV-P----IAAEVFKKVGTYDPKRLLGVTMLDV 196 (289)
Q Consensus 125 ~~~~g~~r---~d~~~~N~~i~~~i~~~i~~~~p~aiviv~tNPvd~~t-~----~~~~~~~~~~~~~~~kviG~t~lds 196 (289)
...++..+ .++...|+...+++++..++.. -..++..| .....- . .+.|-. +...|...+|.+.+..
T Consensus 75 ~~~~~~~~~~~~~~~~~nv~gt~~ll~aa~~~~-~~~~v~~s-s~~~~~~~~~~~~~~E~~---~~~~p~~~Yg~sK~~~ 149 (314)
T COG0451 75 SSVPDSNASDPAEFLDVNVDGTLNLLEAARAAG-VKRFVFAS-SVSVVYGDPPPLPIDEDL---GPPRPLNPYGVSKLAA 149 (314)
T ss_pred CchhhhhhhCHHHHHHHHHHHHHHHHHHHHHcC-CCeEEEeC-CCceECCCCCCCCccccc---CCCCCCCHHHHHHHHH
Confidence 65444332 2478899999999999999833 33333332 221110 0 000100 1112222356665555
Q ss_pred HHHHHHHHHHcCCCCccee-eeEEcccCC
Q 022947 197 VRANTFVAEVLGLDPREVD-VPVVGGHAG 224 (289)
Q Consensus 197 ~R~~~~lA~~l~v~~~~V~-~~V~G~hg~ 224 (289)
.+.-...++..+++..-++ ..|+|.+..
T Consensus 150 E~~~~~~~~~~~~~~~ilR~~~vyGp~~~ 178 (314)
T COG0451 150 EQLLRAYARLYGLPVVILRPFNVYGPGDK 178 (314)
T ss_pred HHHHHHHHHHhCCCeEEEeeeeeeCCCCC
Confidence 5555555556678888888 458887654
No 82
>PLN02662 cinnamyl-alcohol dehydrogenase family protein
Probab=98.35 E-value=5.9e-06 Score=76.24 Aligned_cols=106 Identities=18% Similarity=0.134 Sum_probs=70.6
Q ss_pred CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCch-hHHhhhhccc-CCceEEEE----ecCCCHHhhhCCCCEEE
Q 022947 46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP-GVTADISHMD-TNAVVRGF----LGQQQLEDALTGMDIVI 119 (289)
Q Consensus 46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~-g~~~DL~~~~-~~~~v~~~----~~t~d~~eal~~aDiVI 119 (289)
.+||.|+||+|++|++++..|+.+|+ +|++++++... .....+.... ....+..+ .....+.++++++|+||
T Consensus 4 ~~~ilVtGatGfIG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~Vi 81 (322)
T PLN02662 4 GKVVCVTGASGYIASWLVKLLLQRGY--TVKATVRDPNDPKKTEHLLALDGAKERLHLFKANLLEEGSFDSVVDGCEGVF 81 (322)
T ss_pred CCEEEEECChHHHHHHHHHHHHHCCC--EEEEEEcCCCchhhHHHHHhccCCCCceEEEeccccCcchHHHHHcCCCEEE
Confidence 36899999999999999999999998 88888876521 1111111110 01122221 12234667789999999
Q ss_pred EcCCCCCCC-CCchhhHHHhhHHHHHHHHHHHHHh
Q 022947 120 IPAGVPRKP-GMTRDDLFNINAGIVKTLCEGIAKC 153 (289)
Q Consensus 120 itag~~~~~-g~~r~d~~~~N~~i~~~i~~~i~~~ 153 (289)
++|+..... .....+.+..|+.....+++.+.+.
T Consensus 82 h~A~~~~~~~~~~~~~~~~~nv~gt~~ll~a~~~~ 116 (322)
T PLN02662 82 HTASPFYHDVTDPQAELIDPAVKGTLNVLRSCAKV 116 (322)
T ss_pred EeCCcccCCCCChHHHHHHHHHHHHHHHHHHHHhC
Confidence 999854221 1222356788999999999998876
No 83
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=98.35 E-value=3.1e-06 Score=78.19 Aligned_cols=121 Identities=22% Similarity=0.348 Sum_probs=73.2
Q ss_pred CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCch-hHH--------hhhhcccC------CceEEEEecCCCHHh
Q 022947 46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP-GVT--------ADISHMDT------NAVVRGFLGQQQLED 110 (289)
Q Consensus 46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~-g~~--------~DL~~~~~------~~~v~~~~~t~d~~e 110 (289)
.+||+|||+ |.+|..+|..++..|+ +|+++|.++.. ... .++..... .........++++ +
T Consensus 4 ~~~V~vIG~-G~mG~~iA~~l~~~G~--~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-~ 79 (295)
T PLN02545 4 IKKVGVVGA-GQMGSGIAQLAAAAGM--DVWLLDSDPAALSRGLDSISSSLARLVKKGKMSQEEADATLGRIRCTTNL-E 79 (295)
T ss_pred cCEEEEECC-CHHHHHHHHHHHhcCC--eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhceEeeCCH-H
Confidence 358999999 9999999999999997 99999997611 110 01111100 0001111123455 6
Q ss_pred hhCCCCEEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhC-CCcEEEEecCCCcccHHHHHHHHHHhCCCCCCcEE
Q 022947 111 ALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCC-PKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLL 189 (289)
Q Consensus 111 al~~aDiVIitag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~-p~aiviv~tNPvd~~t~~~~~~~~~~~~~~~~kvi 189 (289)
++++||+||.+. .++..+...+...+.++. |++++ +||-+.+-.. + +.+..+ .+.+++
T Consensus 80 ~~~~aD~Vieav--------------~e~~~~k~~v~~~l~~~~~~~~il--~s~tS~i~~~---~-l~~~~~-~~~r~~ 138 (295)
T PLN02545 80 ELRDADFIIEAI--------------VESEDLKKKLFSELDRICKPSAIL--ASNTSSISIT---R-LASATQ-RPQQVI 138 (295)
T ss_pred HhCCCCEEEEcC--------------ccCHHHHHHHHHHHHhhCCCCcEE--EECCCCCCHH---H-HHhhcC-CCcceE
Confidence 799999999985 234556667777787776 56654 4676665321 1 222222 245677
Q ss_pred Ee
Q 022947 190 GV 191 (289)
Q Consensus 190 G~ 191 (289)
|+
T Consensus 139 g~ 140 (295)
T PLN02545 139 GM 140 (295)
T ss_pred EE
Confidence 76
No 84
>PRK08125 bifunctional UDP-glucuronic acid decarboxylase/UDP-4-amino-4-deoxy-L-arabinose formyltransferase; Validated
Probab=98.34 E-value=1.2e-05 Score=82.32 Aligned_cols=178 Identities=15% Similarity=0.049 Sum_probs=105.3
Q ss_pred cccccccccCCCCCCCEEEEEcCCCccHHHHHHHHHhC-CCccEEEEEeCCCchhHHhhhhcccCCceEEEEec--C--C
Q 022947 32 GLGRMDCRAKGGSPGFKVAVLGAAGGIGQPLAMLMKIN-PLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLG--Q--Q 106 (289)
Q Consensus 32 ~~~~~~~~~~~~~~~~KI~IIGaaG~VGs~la~~L~~~-g~~~eI~LvD~~~~~g~~~DL~~~~~~~~v~~~~~--t--~ 106 (289)
|-++--|..+ +.|||.|+||+||+|++++..|+.. ++ +|+.+|++...- .++.. ...+..+.+ + .
T Consensus 304 ~~~~~~~~~~---~~~~VLVTGatGFIGs~Lv~~Ll~~~g~--~V~~l~r~~~~~--~~~~~---~~~~~~~~gDl~d~~ 373 (660)
T PRK08125 304 LNSKPACSAK---RRTRVLILGVNGFIGNHLTERLLRDDNY--EVYGLDIGSDAI--SRFLG---HPRFHFVEGDISIHS 373 (660)
T ss_pred ecccchhhhh---cCCEEEEECCCchHHHHHHHHHHhCCCc--EEEEEeCCchhh--hhhcC---CCceEEEeccccCcH
Confidence 3445556554 6789999999999999999988874 67 999999865210 11111 111221111 1 1
Q ss_pred C-HHhhhCCCCEEEEcCCCCCC--CCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecCCCcccH----HHHHHHHHH
Q 022947 107 Q-LEDALTGMDIVIIPAGVPRK--PGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTV----PIAAEVFKK 179 (289)
Q Consensus 107 d-~~eal~~aDiVIitag~~~~--~g~~r~d~~~~N~~i~~~i~~~i~~~~p~aiviv~tNPvd~~t----~~~~~~~~~ 179 (289)
+ +.++++++|+||++|+.... ......+.+..|+....++.+.++++. . .++.+|... +.. ....|-...
T Consensus 374 ~~l~~~l~~~D~ViHlAa~~~~~~~~~~~~~~~~~Nv~~t~~ll~a~~~~~-~-~~V~~SS~~-vyg~~~~~~~~E~~~~ 450 (660)
T PRK08125 374 EWIEYHIKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLKIIRYCVKYN-K-RIIFPSTSE-VYGMCTDKYFDEDTSN 450 (660)
T ss_pred HHHHHHhcCCCEEEECccccCchhhccCHHHHHHhhHHHHHHHHHHHHhcC-C-eEEEEcchh-hcCCCCCCCcCccccc
Confidence 1 34568899999999886432 122345677889999999999999876 3 444444311 100 000010000
Q ss_pred ---hCCCCCCcEEEeeeccHHHHHHHHHHHcCCCCccee-eeEEccc
Q 022947 180 ---VGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVD-VPVVGGH 222 (289)
Q Consensus 180 ---~~~~~~~kviG~t~lds~R~~~~lA~~l~v~~~~V~-~~V~G~h 222 (289)
...-++...+|.+.+-..++-...++..+++...++ ..|+|.+
T Consensus 451 ~~~~p~~~p~s~Yg~sK~~~E~~~~~~~~~~g~~~~ilR~~~vyGp~ 497 (660)
T PRK08125 451 LIVGPINKQRWIYSVSKQLLDRVIWAYGEKEGLRFTLFRPFNWMGPR 497 (660)
T ss_pred cccCCCCCCccchHHHHHHHHHHHHHHHHhcCCceEEEEEceeeCCC
Confidence 000012235777765566666666777888888887 4488875
No 85
>PLN02206 UDP-glucuronate decarboxylase
Probab=98.31 E-value=8.3e-06 Score=79.80 Aligned_cols=112 Identities=16% Similarity=0.045 Sum_probs=73.7
Q ss_pred CCCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCc--hhHHhhhhcccCCceEEEEecCCCHHhhhCCCCEEEEcC
Q 022947 45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPA 122 (289)
Q Consensus 45 ~~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~--~g~~~DL~~~~~~~~v~~~~~t~d~~eal~~aDiVIita 122 (289)
+.|||.|+||+|+||++++..|+.+|+ +|+.+|.... .....+. .. ..++..+.. +-...++.++|+||++|
T Consensus 118 ~~~kILVTGatGfIGs~Lv~~Ll~~G~--~V~~ld~~~~~~~~~~~~~--~~-~~~~~~i~~-D~~~~~l~~~D~ViHlA 191 (442)
T PLN02206 118 KGLRVVVTGGAGFVGSHLVDRLMARGD--SVIVVDNFFTGRKENVMHH--FS-NPNFELIRH-DVVEPILLEVDQIYHLA 191 (442)
T ss_pred CCCEEEEECcccHHHHHHHHHHHHCcC--EEEEEeCCCccchhhhhhh--cc-CCceEEEEC-CccChhhcCCCEEEEee
Confidence 457999999999999999999999997 8999986531 1111111 11 122332211 11234578899999999
Q ss_pred CCCCC--CCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecC
Q 022947 123 GVPRK--PGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISN 164 (289)
Q Consensus 123 g~~~~--~g~~r~d~~~~N~~i~~~i~~~i~~~~p~aiviv~tN 164 (289)
+.... ...+..+.+..|+....++++.+++... .+|++|.
T Consensus 192 a~~~~~~~~~~p~~~~~~Nv~gt~nLleaa~~~g~--r~V~~SS 233 (442)
T PLN02206 192 CPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGA--RFLLTST 233 (442)
T ss_pred eecchhhhhcCHHHHHHHHHHHHHHHHHHHHHhCC--EEEEECC
Confidence 75421 1123456778999999999999988753 4555443
No 86
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=98.30 E-value=1.3e-05 Score=77.51 Aligned_cols=119 Identities=25% Similarity=0.325 Sum_probs=75.9
Q ss_pred CEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchhHHhhhhccc----------------CCceEEEEecCCCHHh
Q 022947 47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMD----------------TNAVVRGFLGQQQLED 110 (289)
Q Consensus 47 ~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g~~~DL~~~~----------------~~~~v~~~~~t~d~~e 110 (289)
|||+|||. |++|..+|..|+..|+ +|+++|+++.. +.+|.... ...+++. ++++.+
T Consensus 1 mkI~vIGl-G~~G~~lA~~La~~G~--~V~~~d~~~~~--v~~l~~g~~~~~e~~l~~~~~~~~~~g~l~~---~~~~~~ 72 (411)
T TIGR03026 1 MKIAVIGL-GYVGLPLAALLADLGH--EVTGVDIDQEK--VDKLNKGKSPIYEPGLDELLAKALAAGRLRA---TTDYED 72 (411)
T ss_pred CEEEEECC-CchhHHHHHHHHhcCC--eEEEEECCHHH--HHHhhcCCCCCCCCCHHHHHHHhhhcCCeEE---ECCHHH
Confidence 58999998 9999999999999998 89999998621 11111100 0112332 356777
Q ss_pred hhCCCCEEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhC-CCcEEEEe-cCCCcccHHHHHHHHHH
Q 022947 111 ALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCC-PKAIVNLI-SNPVNSTVPIAAEVFKK 179 (289)
Q Consensus 111 al~~aDiVIitag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~-p~aiviv~-tNPvd~~t~~~~~~~~~ 179 (289)
++++||+||++.+.|..... ..+...+.+.++.+.++. +..+++.. |-|......+...++.+
T Consensus 73 ~~~~advvii~vpt~~~~~~------~~d~~~v~~~~~~i~~~l~~g~lvi~~STv~pgt~~~l~~~~~~~ 137 (411)
T TIGR03026 73 AIRDADVIIICVPTPLKEDG------SPDLSYVESAAETIAKHLRKGATVVLESTVPPGTTEEVVKPILER 137 (411)
T ss_pred HHhhCCEEEEEeCCCCCCCC------CcChHHHHHHHHHHHHhcCCCCEEEEeCcCCCCchHHHHHHHHHh
Confidence 89999999999887754321 124566666777777664 45555443 44555544444344333
No 87
>PRK10217 dTDP-glucose 4,6-dehydratase; Provisional
Probab=98.30 E-value=1.9e-05 Score=74.19 Aligned_cols=169 Identities=15% Similarity=0.066 Sum_probs=98.7
Q ss_pred CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchhHHhhhhcccCCceEEE----EecCCCHHhhhC--CCCEEE
Q 022947 46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRG----FLGQQQLEDALT--GMDIVI 119 (289)
Q Consensus 46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g~~~DL~~~~~~~~v~~----~~~t~d~~eal~--~aDiVI 119 (289)
++||.|+||+|++|++++..|...|. ..++++|..+..+....+........+.. +...+++.+.++ +.|+||
T Consensus 1 ~~~vlVtGatGfIG~~l~~~L~~~g~-~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~D~Vi 79 (355)
T PRK10217 1 MRKILITGGAGFIGSALVRYIINETS-DAVVVVDKLTYAGNLMSLAPVAQSERFAFEKVDICDRAELARVFTEHQPDCVM 79 (355)
T ss_pred CcEEEEEcCCcHHHHHHHHHHHHcCC-CEEEEEecCccccchhhhhhcccCCceEEEECCCcChHHHHHHHhhcCCCEEE
Confidence 35899999999999999999998885 24667776532111111111100111111 111123445566 389999
Q ss_pred EcCCCCCCC--CCchhhHHHhhHHHHHHHHHHHHHhC-------CC-cEEEEecCCC---------cccHHHHHHHHHHh
Q 022947 120 IPAGVPRKP--GMTRDDLFNINAGIVKTLCEGIAKCC-------PK-AIVNLISNPV---------NSTVPIAAEVFKKV 180 (289)
Q Consensus 120 itag~~~~~--g~~r~d~~~~N~~i~~~i~~~i~~~~-------p~-aiviv~tNPv---------d~~t~~~~~~~~~~ 180 (289)
++||..... .....+.+..|+.....+++.+.++. +. ..++.+|... +.++ | .
T Consensus 80 h~A~~~~~~~~~~~~~~~~~~N~~gt~~ll~a~~~~~~~~~~~~~~~~~~i~~SS~~vyg~~~~~~~~~~----E----~ 151 (355)
T PRK10217 80 HLAAESHVDRSIDGPAAFIETNIVGTYTLLEAARAYWNALTEDKKSAFRFHHISTDEVYGDLHSTDDFFT----E----T 151 (355)
T ss_pred ECCcccCcchhhhChHHHHHHhhHHHHHHHHHHHHhhhcccccccCceEEEEecchhhcCCCCCCCCCcC----C----C
Confidence 999864321 11235577889999999999887642 11 2444444321 0011 0 1
Q ss_pred CCCCCCcEEEeeeccHHHHHHHHHHHcCCCCccee-eeEEcccC
Q 022947 181 GTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVD-VPVVGGHA 223 (289)
Q Consensus 181 ~~~~~~kviG~t~lds~R~~~~lA~~l~v~~~~V~-~~V~G~hg 223 (289)
....+...+|.+.+...++...+++..+++..-++ ..|+|.+.
T Consensus 152 ~~~~p~s~Y~~sK~~~e~~~~~~~~~~~~~~~i~r~~~v~Gp~~ 195 (355)
T PRK10217 152 TPYAPSSPYSASKASSDHLVRAWLRTYGLPTLITNCSNNYGPYH 195 (355)
T ss_pred CCCCCCChhHHHHHHHHHHHHHHHHHhCCCeEEEeeeeeeCCCC
Confidence 12334445666666666666667788888777776 55888764
No 88
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=98.27 E-value=4.9e-06 Score=77.46 Aligned_cols=103 Identities=23% Similarity=0.269 Sum_probs=66.4
Q ss_pred CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCc-hhHHh--------hhhcccC---------CceEEEEecCCC
Q 022947 46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT-PGVTA--------DISHMDT---------NAVVRGFLGQQQ 107 (289)
Q Consensus 46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~-~g~~~--------DL~~~~~---------~~~v~~~~~t~d 107 (289)
.+||+|||+ |.+|++++..|+..|+ +|+++|+++. ..... .+..... ..++.. +++
T Consensus 2 ~~~V~VIG~-G~mG~~iA~~la~~G~--~V~v~d~~~~~~~~~~~~~~~~l~~l~~~g~~~~~~~~~~~~~i~~---~~~ 75 (308)
T PRK06129 2 MGSVAIIGA-GLIGRAWAIVFARAGH--EVRLWDADPAAAAAAPAYIAGRLEDLAAFDLLDGEAPDAVLARIRV---TDS 75 (308)
T ss_pred CcEEEEECc-cHHHHHHHHHHHHCCC--eeEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCchhhHHHHhcCeEE---ECc
Confidence 358999998 9999999999999998 9999999861 11100 1111110 112332 457
Q ss_pred HHhhhCCCCEEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecCCCccc
Q 022947 108 LEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNST 169 (289)
Q Consensus 108 ~~eal~~aDiVIitag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~aiviv~tNPvd~~ 169 (289)
+.+++++||+|+.+.. .+....+.+...+.+..++..++ .||.....
T Consensus 76 ~~~a~~~ad~Vi~avp--------------e~~~~k~~~~~~l~~~~~~~~ii-~ssts~~~ 122 (308)
T PRK06129 76 LADAVADADYVQESAP--------------ENLELKRALFAELDALAPPHAIL-ASSTSALL 122 (308)
T ss_pred HHHhhCCCCEEEECCc--------------CCHHHHHHHHHHHHHhCCCcceE-EEeCCCCC
Confidence 8788999999999851 13344555666677777554444 46655433
No 89
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated
Probab=98.27 E-value=7.4e-06 Score=81.26 Aligned_cols=104 Identities=13% Similarity=0.125 Sum_probs=69.3
Q ss_pred CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCch-hHHhh--------hh---cccC--CceEEEEecCCCHHhh
Q 022947 46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP-GVTAD--------IS---HMDT--NAVVRGFLGQQQLEDA 111 (289)
Q Consensus 46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~-g~~~D--------L~---~~~~--~~~v~~~~~t~d~~ea 111 (289)
.+||+|||+ |.+|+.+|..|+..|+ +|.++|+++.. ....+ +. .... ..++. .++++.++
T Consensus 4 i~kIavIG~-G~MG~~iA~~la~~G~--~V~v~D~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~i~---~~~~~~ea 77 (495)
T PRK07531 4 IMKAACIGG-GVIGGGWAARFLLAGI--DVAVFDPHPEAERIIGEVLANAERAYAMLTDAPLPPEGRLT---FCASLAEA 77 (495)
T ss_pred cCEEEEECc-CHHHHHHHHHHHhCCC--eEEEEeCCHHHHHHHHHHHHHHHHHHhhhccchhhhhhceE---eeCCHHHH
Confidence 358999998 9999999999999998 99999998621 11111 00 0000 01233 24577788
Q ss_pred hCCCCEEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecCCCcccH
Q 022947 112 LTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTV 170 (289)
Q Consensus 112 l~~aDiVIitag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~aiviv~tNPvd~~t 170 (289)
+++||+||.+.. .+.++.+++...+.+++|+.. ++.||.+++..
T Consensus 78 ~~~aD~Vieavp--------------e~~~vk~~l~~~l~~~~~~~~-iI~SsTsgi~~ 121 (495)
T PRK07531 78 VAGADWIQESVP--------------ERLDLKRRVLAEIDAAARPDA-LIGSSTSGFLP 121 (495)
T ss_pred hcCCCEEEEcCc--------------CCHHHHHHHHHHHHhhCCCCc-EEEEcCCCCCH
Confidence 999999999841 245556667777887775443 34677777643
No 90
>CHL00194 ycf39 Ycf39; Provisional
Probab=98.24 E-value=8.2e-06 Score=75.84 Aligned_cols=105 Identities=12% Similarity=0.062 Sum_probs=69.6
Q ss_pred CEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchhHHhhhhcccCCceEE--EEecCCCHHhhhCCCCEEEEcCCC
Q 022947 47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVR--GFLGQQQLEDALTGMDIVIIPAGV 124 (289)
Q Consensus 47 ~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g~~~DL~~~~~~~~v~--~~~~t~d~~eal~~aDiVIitag~ 124 (289)
|||.|+||+|++|++++..|+..|+ +|+.++++.... ..+.+.. ..+. ......++.++++++|+||++++.
T Consensus 1 MkIlVtGatG~iG~~lv~~Ll~~g~--~V~~l~R~~~~~--~~l~~~~--v~~v~~Dl~d~~~l~~al~g~d~Vi~~~~~ 74 (317)
T CHL00194 1 MSLLVIGATGTLGRQIVRQALDEGY--QVRCLVRNLRKA--SFLKEWG--AELVYGDLSLPETLPPSFKGVTAIIDASTS 74 (317)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCC--eEEEEEcChHHh--hhHhhcC--CEEEECCCCCHHHHHHHHCCCCEEEECCCC
Confidence 5899999999999999999999998 899998865211 1111111 1111 011123467889999999998764
Q ss_pred CCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEE
Q 022947 125 PRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVN 160 (289)
Q Consensus 125 ~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~aivi 160 (289)
... ...++...|......+++.+++.+-+-+|.
T Consensus 75 ~~~---~~~~~~~~~~~~~~~l~~aa~~~gvkr~I~ 107 (317)
T CHL00194 75 RPS---DLYNAKQIDWDGKLALIEAAKAAKIKRFIF 107 (317)
T ss_pred CCC---CccchhhhhHHHHHHHHHHHHHcCCCEEEE
Confidence 321 122345668888888999888876554443
No 91
>PRK15057 UDP-glucose 6-dehydrogenase; Provisional
Probab=98.24 E-value=1.4e-05 Score=76.95 Aligned_cols=114 Identities=18% Similarity=0.276 Sum_probs=69.3
Q ss_pred CEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchhHHhhhhcc------------cCCceEEEEecCCCHHhhhCC
Q 022947 47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHM------------DTNAVVRGFLGQQQLEDALTG 114 (289)
Q Consensus 47 ~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g~~~DL~~~------------~~~~~v~~~~~t~d~~eal~~ 114 (289)
|||+|||+ |+||..+|..++. |+ +|+.+|+++.+ +..+... ......+ +..+.+..++.++
T Consensus 1 mkI~VIGl-GyvGl~~A~~lA~-G~--~VigvD~d~~k--v~~l~~g~~~~~e~~l~~~l~~~~~~-l~~t~~~~~~~~~ 73 (388)
T PRK15057 1 MKITISGT-GYVGLSNGLLIAQ-NH--EVVALDILPSR--VAMLNDRISPIVDKEIQQFLQSDKIH-FNATLDKNEAYRD 73 (388)
T ss_pred CEEEEECC-CHHHHHHHHHHHh-CC--cEEEEECCHHH--HHHHHcCCCCCCCcCHHHHHHhCCCc-EEEecchhhhhcC
Confidence 58999998 9999999977775 76 99999998721 1111110 0001111 1123456678899
Q ss_pred CCEEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEE-EecCCCcccHHH
Q 022947 115 MDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVN-LISNPVNSTVPI 172 (289)
Q Consensus 115 aDiVIitag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~aivi-v~tNPvd~~t~~ 172 (289)
||+||++.+.|...... ..++..+.++++.+.+..|..+|+ -.|-|....-.+
T Consensus 74 ad~vii~Vpt~~~~k~~-----~~dl~~v~~v~~~i~~~~~g~lVV~~STv~pgtt~~l 127 (388)
T PRK15057 74 ADYVIIATPTDYDPKTN-----YFNTSSVESVIKDVVEINPYAVMVIKSTVPVGFTAAM 127 (388)
T ss_pred CCEEEEeCCCCCccCCC-----CcChHHHHHHHHHHHhcCCCCEEEEeeecCCchHHHH
Confidence 99999998766322111 124556666666666644555544 336676665443
No 92
>PLN02572 UDP-sulfoquinovose synthase
Probab=98.21 E-value=1.8e-05 Score=77.33 Aligned_cols=176 Identities=14% Similarity=0.116 Sum_probs=101.1
Q ss_pred CCCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCc---hh------------HHhhhh---cccCCceEEEEe---
Q 022947 45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT---PG------------VTADIS---HMDTNAVVRGFL--- 103 (289)
Q Consensus 45 ~~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~---~g------------~~~DL~---~~~~~~~v~~~~--- 103 (289)
+++||.|+||+|+||++++..|+..|. +|+++|.... .. ....+. +.. ...+..+.
T Consensus 46 ~~k~VLVTGatGfIGs~Lv~~L~~~G~--~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~v~~v~~Dl 122 (442)
T PLN02572 46 KKKKVMVIGGDGYCGWATALHLSKRGY--EVAIVDNLCRRLFDHQLGLDSLTPIASIHERVRRWKEVS-GKEIELYVGDI 122 (442)
T ss_pred cCCEEEEECCCcHHHHHHHHHHHHCCC--eEEEEeccccccccccccccccccccchHHHHHHHHHhh-CCcceEEECCC
Confidence 357899999999999999999999997 8999985321 00 000010 000 01122221
Q ss_pred -cCCCHHhhhC--CCCEEEEcCCCCCCC-CC-ch---hhHHHhhHHHHHHHHHHHHHhCCCcEEEEecC------CCccc
Q 022947 104 -GQQQLEDALT--GMDIVIIPAGVPRKP-GM-TR---DDLFNINAGIVKTLCEGIAKCCPKAIVNLISN------PVNST 169 (289)
Q Consensus 104 -~t~d~~eal~--~aDiVIitag~~~~~-g~-~r---~d~~~~N~~i~~~i~~~i~~~~p~aiviv~tN------Pvd~~ 169 (289)
...++.++++ ++|+||++|+....+ .. +. ...+..|+.....+++.+++++....++.+|. |-+.+
T Consensus 123 ~d~~~v~~~l~~~~~D~ViHlAa~~~~~~~~~~~~~~~~~~~~Nv~gt~nlleaa~~~gv~~~~V~~SS~~vYG~~~~~~ 202 (442)
T PLN02572 123 CDFEFLSEAFKSFEPDAVVHFGEQRSAPYSMIDRSRAVFTQHNNVIGTLNVLFAIKEFAPDCHLVKLGTMGEYGTPNIDI 202 (442)
T ss_pred CCHHHHHHHHHhCCCCEEEECCCcccChhhhcChhhHHHHHHHHHHHHHHHHHHHHHhCCCccEEEEecceecCCCCCCC
Confidence 1123444555 489999998653221 11 11 23356799999999999998876544544331 11000
Q ss_pred H--HH-HHHHHHHh---CCCCCCcEEEeeeccHHHHHHHHHHHcCCCCccee-eeEEcccC
Q 022947 170 V--PI-AAEVFKKV---GTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVD-VPVVGGHA 223 (289)
Q Consensus 170 t--~~-~~~~~~~~---~~~~~~kviG~t~lds~R~~~~lA~~l~v~~~~V~-~~V~G~hg 223 (289)
. ++ ..+..... .-..|...+|.+.+....+....++..|++...++ ..|+|.+.
T Consensus 203 ~E~~i~~~~~~~e~~~~~~~~P~s~Yg~SK~a~E~l~~~~~~~~gl~~v~lR~~~vyGp~~ 263 (442)
T PLN02572 203 EEGYITITHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAWGIRATDLNQGVVYGVRT 263 (442)
T ss_pred cccccccccccccccccCCCCCCCcchhHHHHHHHHHHHHHHhcCCCEEEEecccccCCCC
Confidence 0 00 00000000 01234567888766555566667788899888887 55899864
No 93
>TIGR03466 HpnA hopanoid-associated sugar epimerase. The sequences in this family are members of the pfam01370 superfamily of NAD-dependent epimerases and dehydratases typically acting on nucleotide-sugar substrates. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of hopene, the cyclization product of the polyisoprenoid squalene.
Probab=98.21 E-value=1.4e-05 Score=73.58 Aligned_cols=111 Identities=17% Similarity=0.193 Sum_probs=73.2
Q ss_pred CEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchhHHhhhhcccCCceEE-EEecCCCHHhhhCCCCEEEEcCCCC
Q 022947 47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVR-GFLGQQQLEDALTGMDIVIIPAGVP 125 (289)
Q Consensus 47 ~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g~~~DL~~~~~~~~v~-~~~~t~d~~eal~~aDiVIitag~~ 125 (289)
|||.|+|++|++|++++..|+..|. +|+++|++.... .++.+... ..+. ......++.++++++|+||++++..
T Consensus 1 ~~vlItG~~G~iG~~l~~~L~~~g~--~V~~~~r~~~~~--~~~~~~~~-~~~~~D~~~~~~l~~~~~~~d~vi~~a~~~ 75 (328)
T TIGR03466 1 MKVLVTGATGFVGSAVVRLLLEQGE--EVRVLVRPTSDR--RNLEGLDV-EIVEGDLRDPASLRKAVAGCRALFHVAADY 75 (328)
T ss_pred CeEEEECCccchhHHHHHHHHHCCC--EEEEEEecCccc--cccccCCc-eEEEeeCCCHHHHHHHHhCCCEEEEeceec
Confidence 4899999999999999999999997 999999865211 11111110 0111 1111224567788999999998754
Q ss_pred CCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEec
Q 022947 126 RKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLIS 163 (289)
Q Consensus 126 ~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~aiviv~t 163 (289)
.....+..+....|+.....+++.+.+..-.- ++++|
T Consensus 76 ~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~-~v~~S 112 (328)
T TIGR03466 76 RLWAPDPEEMYAANVEGTRNLLRAALEAGVER-VVYTS 112 (328)
T ss_pred ccCCCCHHHHHHHHHHHHHHHHHHHHHhCCCe-EEEEe
Confidence 32233455677889999999999888765333 44444
No 94
>PLN02214 cinnamoyl-CoA reductase
Probab=98.20 E-value=2.4e-05 Score=73.67 Aligned_cols=170 Identities=15% Similarity=0.039 Sum_probs=97.3
Q ss_pred CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCch---hHHhhhhcccCCceEEEE----ecCCCHHhhhCCCCEE
Q 022947 46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP---GVTADISHMDTNAVVRGF----LGQQQLEDALTGMDIV 118 (289)
Q Consensus 46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~---g~~~DL~~~~~~~~v~~~----~~t~d~~eal~~aDiV 118 (289)
+++|.|+||+|++|++++..|+.+|+ +|+.++++... ....++... ...+..+ ....++.++++++|+|
T Consensus 10 ~~~vlVTGatGfIG~~l~~~L~~~G~--~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~~Dl~d~~~~~~~~~~~d~V 85 (342)
T PLN02214 10 GKTVCVTGAGGYIASWIVKILLERGY--TVKGTVRNPDDPKNTHLRELEGG--KERLILCKADLQDYEALKAAIDGCDGV 85 (342)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCcC--EEEEEeCCchhhhHHHHHHhhCC--CCcEEEEecCcCChHHHHHHHhcCCEE
Confidence 46899999999999999999999998 88888876421 111112111 1122221 1223466788999999
Q ss_pred EEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecCCCcccH-------HHHHHHHHHhC--CCCCCcEE
Q 022947 119 IIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTV-------PIAAEVFKKVG--TYDPKRLL 189 (289)
Q Consensus 119 Iitag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~aiviv~tNPvd~~t-------~~~~~~~~~~~--~~~~~kvi 189 (289)
|++|+... ....+.+..|+.....+++.+.+.....+ +++|.-..+-. ..+.|-.+... -..+...+
T Consensus 86 ih~A~~~~---~~~~~~~~~nv~gt~~ll~aa~~~~v~r~-V~~SS~~avyg~~~~~~~~~~~E~~~~~~~~~~~p~~~Y 161 (342)
T PLN02214 86 FHTASPVT---DDPEQMVEPAVNGAKFVINAAAEAKVKRV-VITSSIGAVYMDPNRDPEAVVDESCWSDLDFCKNTKNWY 161 (342)
T ss_pred EEecCCCC---CCHHHHHHHHHHHHHHHHHHHHhcCCCEE-EEeccceeeeccCCCCCCcccCcccCCChhhccccccHH
Confidence 99998542 22355678899999999999988754433 33332111100 00001000000 00011223
Q ss_pred EeeeccHHHHHHHHHHHcCCCCccee-eeEEcccC
Q 022947 190 GVTMLDVVRANTFVAEVLGLDPREVD-VPVVGGHA 223 (289)
Q Consensus 190 G~t~lds~R~~~~lA~~l~v~~~~V~-~~V~G~hg 223 (289)
|.+.....++....++..|++..-++ ..|+|.+.
T Consensus 162 ~~sK~~aE~~~~~~~~~~g~~~v~lRp~~vyGp~~ 196 (342)
T PLN02214 162 CYGKMVAEQAAWETAKEKGVDLVVLNPVLVLGPPL 196 (342)
T ss_pred HHHHHHHHHHHHHHHHHcCCcEEEEeCCceECCCC
Confidence 33433344444555666788777777 55888753
No 95
>COG1087 GalE UDP-glucose 4-epimerase [Cell envelope biogenesis, outer membrane]
Probab=98.19 E-value=3.2e-05 Score=71.34 Aligned_cols=163 Identities=17% Similarity=0.115 Sum_probs=109.3
Q ss_pred CEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCC-chhHHhhhhcccC-CceEEEEecCCCHHhhh--CCCCEEEEcC
Q 022947 47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-TPGVTADISHMDT-NAVVRGFLGQQQLEDAL--TGMDIVIIPA 122 (289)
Q Consensus 47 ~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~-~~g~~~DL~~~~~-~~~v~~~~~t~d~~eal--~~aDiVIita 122 (289)
|+|.|+|++|+|||+.+..|++.|+ +++.+|.-. -...+.+-..... ...++. ..-+.+.| ...|.||+.|
T Consensus 1 ~~iLVtGGAGYIGSHtv~~Ll~~G~--~vvV~DNL~~g~~~~v~~~~~~f~~gDi~D---~~~L~~vf~~~~idaViHFA 75 (329)
T COG1087 1 MKVLVTGGAGYIGSHTVRQLLKTGH--EVVVLDNLSNGHKIALLKLQFKFYEGDLLD---RALLTAVFEENKIDAVVHFA 75 (329)
T ss_pred CeEEEecCcchhHHHHHHHHHHCCC--eEEEEecCCCCCHHHhhhccCceEEecccc---HHHHHHHHHhcCCCEEEECc
Confidence 6899999999999999999999998 999999865 1111111111000 011111 11122333 4789999998
Q ss_pred CCCCCCCC---chhhHHHhhHHHHHHHHHHHHHhCCCcEEEEe-----cCCCcccHHHHHHHHHHhCCCCCCcEEEeeec
Q 022947 123 GVPRKPGM---TRDDLFNINAGIVKTLCEGIAKCCPKAIVNLI-----SNPVNSTVPIAAEVFKKVGTYDPKRLLGVTML 194 (289)
Q Consensus 123 g~~~~~g~---~r~d~~~~N~~i~~~i~~~i~~~~p~aiviv~-----tNPvd~~t~~~~~~~~~~~~~~~~kviG~t~l 194 (289)
|...- |+ .-+.++..|+-....+.+.|.+++.+-+|+-. .+|..+ ++ .+..-..|.+-+|-|.|
T Consensus 76 a~~~V-gESv~~Pl~Yy~NNv~gTl~Ll~am~~~gv~~~vFSStAavYG~p~~~--PI-----~E~~~~~p~NPYG~sKl 147 (329)
T COG1087 76 ASISV-GESVQNPLKYYDNNVVGTLNLIEAMLQTGVKKFIFSSTAAVYGEPTTS--PI-----SETSPLAPINPYGRSKL 147 (329)
T ss_pred ccccc-chhhhCHHHHHhhchHhHHHHHHHHHHhCCCEEEEecchhhcCCCCCc--cc-----CCCCCCCCCCcchhHHH
Confidence 75322 22 24678899999999999999999987776532 355441 11 11233557788999988
Q ss_pred cHHHHHHHHHHHcCCCCcceeee-EEccc
Q 022947 195 DVVRANTFVAEVLGLDPREVDVP-VVGGH 222 (289)
Q Consensus 195 ds~R~~~~lA~~l~v~~~~V~~~-V~G~h 222 (289)
-+.++.+-+++..+....-.+-+ +.|-|
T Consensus 148 m~E~iL~d~~~a~~~~~v~LRYFN~aGA~ 176 (329)
T COG1087 148 MSEEILRDAAKANPFKVVILRYFNVAGAC 176 (329)
T ss_pred HHHHHHHHHHHhCCCcEEEEEecccccCC
Confidence 88888898999988766666655 77766
No 96
>PRK10084 dTDP-glucose 4,6 dehydratase; Provisional
Probab=98.19 E-value=3.2e-05 Score=72.49 Aligned_cols=175 Identities=14% Similarity=0.086 Sum_probs=98.6
Q ss_pred CEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchhHHhhhhcccCCceEEE----EecCCCHHhhhC--CCCEEEE
Q 022947 47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRG----FLGQQQLEDALT--GMDIVII 120 (289)
Q Consensus 47 ~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g~~~DL~~~~~~~~v~~----~~~t~d~~eal~--~aDiVIi 120 (289)
|||.|+||+|++|++++..|+..|. ..++.+|.....+....+........+.. +...+++.++++ ++|+||+
T Consensus 1 mkilITGgtG~iG~~l~~~L~~~g~-~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~vih 79 (352)
T PRK10084 1 MKILVTGGAGFIGSAVVRHIINNTQ-DSVVNVDKLTYAGNLESLADVSDSERYVFEHADICDRAELDRIFAQHQPDAVMH 79 (352)
T ss_pred CeEEEECCCcHHhHHHHHHHHHhCC-CeEEEecCCCccchHHHHHhcccCCceEEEEecCCCHHHHHHHHHhcCCCEEEE
Confidence 5899999999999999999988875 24666775431111111111100111111 111123445564 4899999
Q ss_pred cCCCCCC--CCCchhhHHHhhHHHHHHHHHHHHHhC-------CC-cEEEEecCCCcccHHHH--H--------HHHHHh
Q 022947 121 PAGVPRK--PGMTRDDLFNINAGIVKTLCEGIAKCC-------PK-AIVNLISNPVNSTVPIA--A--------EVFKKV 180 (289)
Q Consensus 121 tag~~~~--~g~~r~d~~~~N~~i~~~i~~~i~~~~-------p~-aiviv~tNPvd~~t~~~--~--------~~~~~~ 180 (289)
+|+.... ......+++..|+.....+++.+.++. .. ..++.+|-.. +..... . ..+.+.
T Consensus 80 ~A~~~~~~~~~~~~~~~~~~N~~gt~~ll~~~~~~~~~~~~~~~~~~~~i~~SS~~-vyg~~~~~~~~~~~~~~~~~~E~ 158 (352)
T PRK10084 80 LAAESHVDRSITGPAAFIETNIVGTYVLLEAARNYWSALDEDKKNAFRFHHISTDE-VYGDLPHPDEVENSEELPLFTET 158 (352)
T ss_pred CCcccCCcchhcCchhhhhhhhHHHHHHHHHHHHhccccccccccceeEEEecchh-hcCCCCccccccccccCCCcccc
Confidence 9986422 112235678899999999999988752 11 2344443211 100000 0 000011
Q ss_pred CCCCCCcEEEeeeccHHHHHHHHHHHcCCCCccee-eeEEcccC
Q 022947 181 GTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVD-VPVVGGHA 223 (289)
Q Consensus 181 ~~~~~~kviG~t~lds~R~~~~lA~~l~v~~~~V~-~~V~G~hg 223 (289)
..+.|...+|.+.....++-..+++.++++...++ ..|+|.+.
T Consensus 159 ~~~~p~~~Y~~sK~~~E~~~~~~~~~~g~~~vilr~~~v~Gp~~ 202 (352)
T PRK10084 159 TAYAPSSPYSASKASSDHLVRAWLRTYGLPTIVTNCSNNYGPYH 202 (352)
T ss_pred CCCCCCChhHHHHHHHHHHHHHHHHHhCCCEEEEeccceeCCCc
Confidence 12345567777766666666667788888777776 44888763
No 97
>PRK11908 NAD-dependent epimerase/dehydratase family protein; Provisional
Probab=98.16 E-value=2.3e-05 Score=73.56 Aligned_cols=164 Identities=13% Similarity=0.074 Sum_probs=91.8
Q ss_pred CCEEEEEcCCCccHHHHHHHHHhC-CCccEEEEEeCCCchhHHhhhhcccCCceEEEEecC-----CCHHhhhCCCCEEE
Q 022947 46 GFKVAVLGAAGGIGQPLAMLMKIN-PLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQ-----QQLEDALTGMDIVI 119 (289)
Q Consensus 46 ~~KI~IIGaaG~VGs~la~~L~~~-g~~~eI~LvD~~~~~g~~~DL~~~~~~~~v~~~~~t-----~d~~eal~~aDiVI 119 (289)
+|||.|+||+|++|++++..|+.. ++ +|+.+|+.... ..++... ..+..+.+. ..+.++++++|+||
T Consensus 1 m~~ilVtGatGfiGs~l~~~L~~~~~~--~V~~~~r~~~~--~~~~~~~---~~~~~~~~Dl~~~~~~~~~~~~~~d~Vi 73 (347)
T PRK11908 1 MKKVLILGVNGFIGHHLSKRILETTDW--EVYGMDMQTDR--LGDLVNH---PRMHFFEGDITINKEWIEYHVKKCDVIL 73 (347)
T ss_pred CcEEEEECCCcHHHHHHHHHHHhCCCC--eEEEEeCcHHH--HHHhccC---CCeEEEeCCCCCCHHHHHHHHcCCCEEE
Confidence 469999999999999999988875 56 89999875311 1111111 112222111 12335678999999
Q ss_pred EcCCCCCC--CCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecCCC------c-ccHHHHHHHHHHh---CCCCCCc
Q 022947 120 IPAGVPRK--PGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPV------N-STVPIAAEVFKKV---GTYDPKR 187 (289)
Q Consensus 120 itag~~~~--~g~~r~d~~~~N~~i~~~i~~~i~~~~p~aiviv~tNPv------d-~~t~~~~~~~~~~---~~~~~~k 187 (289)
++|+.... ...+.......|+.....+++.+++.. ..++.+|... + .++ +-.... ...+|..
T Consensus 74 H~aa~~~~~~~~~~p~~~~~~n~~~~~~ll~aa~~~~--~~~v~~SS~~vyg~~~~~~~~----ee~~~~~~~~~~~p~~ 147 (347)
T PRK11908 74 PLVAIATPATYVKQPLRVFELDFEANLPIVRSAVKYG--KHLVFPSTSEVYGMCPDEEFD----PEASPLVYGPINKPRW 147 (347)
T ss_pred ECcccCChHHhhcCcHHHHHHHHHHHHHHHHHHHhcC--CeEEEEecceeeccCCCcCcC----ccccccccCcCCCccc
Confidence 99875322 122334456778888889999888764 3555544321 1 000 000000 0001222
Q ss_pred EEEeeeccHHHHHHHHHHHcCCCCccee-eeEEccc
Q 022947 188 LLGVTMLDVVRANTFVAEVLGLDPREVD-VPVVGGH 222 (289)
Q Consensus 188 viG~t~lds~R~~~~lA~~l~v~~~~V~-~~V~G~h 222 (289)
.+|.+...........++..+++..-++ ..++|.+
T Consensus 148 ~Y~~sK~~~e~~~~~~~~~~~~~~~ilR~~~v~Gp~ 183 (347)
T PRK11908 148 IYACSKQLMDRVIWAYGMEEGLNFTLFRPFNWIGPG 183 (347)
T ss_pred hHHHHHHHHHHHHHHHHHHcCCCeEEEeeeeeeCCC
Confidence 4444444343344445566677777777 4478864
No 98
>PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional
Probab=98.15 E-value=3.7e-05 Score=74.90 Aligned_cols=119 Identities=14% Similarity=0.145 Sum_probs=72.8
Q ss_pred CCCCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchhHHhhhhcccC------------CceEEEEecCCCHHhh
Q 022947 44 SPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDT------------NAVVRGFLGQQQLEDA 111 (289)
Q Consensus 44 ~~~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g~~~DL~~~~~------------~~~v~~~~~t~d~~ea 111 (289)
..+|||+|||. |+||..+|..|+. ++ +|+.||+++. .+.+|..... ...+. .+++. ++
T Consensus 4 ~~~mkI~vIGl-GyvGlpmA~~la~-~~--~V~g~D~~~~--~ve~l~~G~~~~~e~~~~~l~~~g~l~---~t~~~-~~ 73 (425)
T PRK15182 4 IDEVKIAIIGL-GYVGLPLAVEFGK-SR--QVVGFDVNKK--RILELKNGVDVNLETTEEELREARYLK---FTSEI-EK 73 (425)
T ss_pred CCCCeEEEECc-CcchHHHHHHHhc-CC--EEEEEeCCHH--HHHHHHCcCCCCCCCCHHHHHhhCCee---EEeCH-HH
Confidence 34589999998 9999999998876 55 9999999872 1222221110 01222 23454 57
Q ss_pred hCCCCEEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCC-CcEEEE-ecCCCcccHHHHHHHHH
Q 022947 112 LTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCP-KAIVNL-ISNPVNSTVPIAAEVFK 178 (289)
Q Consensus 112 l~~aDiVIitag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p-~aiviv-~tNPvd~~t~~~~~~~~ 178 (289)
+++||++|+|.+.|.+... ..++..+....+.|.++.+ ..+||+ .|-|....-.++...+.
T Consensus 74 ~~~advvii~Vptp~~~~~------~~dl~~v~~a~~~i~~~l~~g~lVI~~STv~pgtt~~~~~~~l~ 136 (425)
T PRK15182 74 IKECNFYIITVPTPINTYK------QPDLTPLIKASETVGTVLNRGDIVVYESTVYPGCTEEECVPILA 136 (425)
T ss_pred HcCCCEEEEEcCCCCCCCC------CcchHHHHHHHHHHHHhcCCCCEEEEecCCCCcchHHHHHHHHH
Confidence 9999999999998864421 1234555555666666553 344333 36666655433333333
No 99
>TIGR01472 gmd GDP-mannose 4,6-dehydratase. Excluded from this model are members of the clade that score poorly because of highly dervied (phylogenetically long-branch) sequences, e.g. Aneurinibacillus thermoaerophilus Gmd, described as a bifunctional GDP-mannose 4,6-dehydratase/GDP-6-deoxy-D-lyxo-4-hexulose reductase (PUBMED:11096116).
Probab=98.13 E-value=4.4e-05 Score=71.54 Aligned_cols=156 Identities=13% Similarity=0.020 Sum_probs=88.3
Q ss_pred CEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCc---hhHHhhhhc-c--cCCceEEEE----ecCCCHHhhhCC--
Q 022947 47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT---PGVTADISH-M--DTNAVVRGF----LGQQQLEDALTG-- 114 (289)
Q Consensus 47 ~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~---~g~~~DL~~-~--~~~~~v~~~----~~t~d~~eal~~-- 114 (289)
+||.|+||+|++|++++..|+..|+ +|+++|++.. ......+.. . .....+..+ .....+.+++++
T Consensus 1 ~~vlVTGatGfIG~~l~~~L~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~l~~~~~~~~ 78 (343)
T TIGR01472 1 KIALITGITGQDGSYLAEFLLEKGY--EVHGLIRRSSSFNTQRIEHIYEDPHNVNKARMKLHYGDLTDSSNLRRIIDEIK 78 (343)
T ss_pred CeEEEEcCCCcHHHHHHHHHHHCCC--EEEEEecCCcccchhhhhhhhhccccccccceeEEEeccCCHHHHHHHHHhCC
Confidence 4899999999999999999999998 9999998642 111111110 0 001112211 111234455664
Q ss_pred CCEEEEcCCCCCCC-C-CchhhHHHhhHHHHHHHHHHHHHhC-CC-cEEEEecC------CCcccHHHHHHHHHHhCCCC
Q 022947 115 MDIVIIPAGVPRKP-G-MTRDDLFNINAGIVKTLCEGIAKCC-PK-AIVNLISN------PVNSTVPIAAEVFKKVGTYD 184 (289)
Q Consensus 115 aDiVIitag~~~~~-g-~~r~d~~~~N~~i~~~i~~~i~~~~-p~-aiviv~tN------Pvd~~t~~~~~~~~~~~~~~ 184 (289)
.|+||++|+..... . ......+..|+.....+++.+.+.+ .+ ..++.+|. +.+. ++ .+...++
T Consensus 79 ~d~ViH~Aa~~~~~~~~~~~~~~~~~n~~gt~~ll~a~~~~~~~~~~~~v~~SS~~vyg~~~~~--~~-----~E~~~~~ 151 (343)
T TIGR01472 79 PTEIYNLAAQSHVKVSFEIPEYTADVDGIGTLRLLEAVRTLGLIKSVKFYQASTSELYGKVQEI--PQ-----NETTPFY 151 (343)
T ss_pred CCEEEECCcccccchhhhChHHHHHHHHHHHHHHHHHHHHhCCCcCeeEEEeccHHhhCCCCCC--CC-----CCCCCCC
Confidence 59999999864322 1 1123344567778888998888765 22 24444332 1110 00 0111234
Q ss_pred CCcEEEeeeccHHHHHHHHHHHcCCCC
Q 022947 185 PKRLLGVTMLDVVRANTFVAEVLGLDP 211 (289)
Q Consensus 185 ~~kviG~t~lds~R~~~~lA~~l~v~~ 211 (289)
|...+|.+.+...++....++..+++.
T Consensus 152 p~~~Y~~sK~~~e~~~~~~~~~~~~~~ 178 (343)
T TIGR01472 152 PRSPYAAAKLYAHWITVNYREAYGLFA 178 (343)
T ss_pred CCChhHHHHHHHHHHHHHHHHHhCCce
Confidence 555666666656666666677767653
No 100
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=98.13 E-value=7.8e-06 Score=62.50 Aligned_cols=94 Identities=19% Similarity=0.245 Sum_probs=61.2
Q ss_pred EEEEEcCCCccHHHHHHHHHhCC-CccEEEEE-eCCCchhHHhhhhcccCCceEEEEecCCCHHhhhCCCCEEEEcCCCC
Q 022947 48 KVAVLGAAGGIGQPLAMLMKINP-LVSVLHLY-DVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVP 125 (289)
Q Consensus 48 KI~IIGaaG~VGs~la~~L~~~g-~~~eI~Lv-D~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~eal~~aDiVIitag~~ 125 (289)
||+|||+ |.+|+.++..|...+ ...+|.++ ++++. ...++.... . +..+ ..+..++++++|+||++.-
T Consensus 1 kI~iIG~-G~mg~al~~~l~~~g~~~~~v~~~~~r~~~--~~~~~~~~~-~--~~~~--~~~~~~~~~~advvilav~-- 70 (96)
T PF03807_consen 1 KIGIIGA-GNMGSALARGLLASGIKPHEVIIVSSRSPE--KAAELAKEY-G--VQAT--ADDNEEAAQEADVVILAVK-- 70 (96)
T ss_dssp EEEEEST-SHHHHHHHHHHHHTTS-GGEEEEEEESSHH--HHHHHHHHC-T--TEEE--SEEHHHHHHHTSEEEE-S---
T ss_pred CEEEECC-CHHHHHHHHHHHHCCCCceeEEeeccCcHH--HHHHHHHhh-c--cccc--cCChHHhhccCCEEEEEEC--
Confidence 7999998 999999999999888 23388866 77652 122222211 1 1111 1246789999999999852
Q ss_pred CCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecCC
Q 022947 126 RKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNP 165 (289)
Q Consensus 126 ~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~aiviv~tNP 165 (289)
| ..+.++++.+....++.+++-++||
T Consensus 71 --p------------~~~~~v~~~i~~~~~~~~vis~~ag 96 (96)
T PF03807_consen 71 --P------------QQLPEVLSEIPHLLKGKLVISIAAG 96 (96)
T ss_dssp --G------------GGHHHHHHHHHHHHTTSEEEEESTT
T ss_pred --H------------HHHHHHHHHHhhccCCCEEEEeCCC
Confidence 1 2255666666445578888887776
No 101
>PLN02260 probable rhamnose biosynthetic enzyme
Probab=98.12 E-value=8.9e-05 Score=75.98 Aligned_cols=180 Identities=13% Similarity=0.006 Sum_probs=97.9
Q ss_pred CCCCCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchhHHhhhhcccCCceEEEEec-CCC---HHhhh--CCCC
Q 022947 43 GSPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLG-QQQ---LEDAL--TGMD 116 (289)
Q Consensus 43 ~~~~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g~~~DL~~~~~~~~v~~~~~-t~d---~~eal--~~aD 116 (289)
+.+++||.|+||+|+||++++..|+..+...+|+.+|..........+........+..+.+ -.| +...+ .++|
T Consensus 3 ~~~~~~VLVTGatGfIG~~lv~~Ll~~g~~~~V~~~d~~~~~~~~~~l~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~D 82 (668)
T PLN02260 3 TYEPKNILITGAAGFIASHVANRLIRNYPDYKIVVLDKLDYCSNLKNLNPSKSSPNFKFVKGDIASADLVNYLLITEGID 82 (668)
T ss_pred CCCCCEEEEECCCcHHHHHHHHHHHHhCCCCEEEEEeCCCccchhhhhhhcccCCCeEEEECCCCChHHHHHHHhhcCCC
Confidence 45678999999999999999999988743338999987431111111111000112322211 112 22222 6899
Q ss_pred EEEEcCCCCCCCC--CchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecCCCcccHHHHHH-H--HHHhCCCCCCcEEEe
Q 022947 117 IVIIPAGVPRKPG--MTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAE-V--FKKVGTYDPKRLLGV 191 (289)
Q Consensus 117 iVIitag~~~~~g--~~r~d~~~~N~~i~~~i~~~i~~~~p~aiviv~tNPvd~~t~~~~~-~--~~~~~~~~~~kviG~ 191 (289)
+||++|+...... ....++...|+.....+++.+++.+.-..+|.+|.- .+.-..-.. . ..+.....|...+|.
T Consensus 83 ~ViHlAa~~~~~~~~~~~~~~~~~Nv~gt~~ll~a~~~~~~vkr~I~~SS~-~vyg~~~~~~~~~~~E~~~~~p~~~Y~~ 161 (668)
T PLN02260 83 TIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACKVTGQIRRFIHVSTD-EVYGETDEDADVGNHEASQLLPTNPYSA 161 (668)
T ss_pred EEEECCCccCchhhhhCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEcch-HHhCCCccccccCccccCCCCCCCCcHH
Confidence 9999998653211 122456778999999999998887632344444431 000000000 0 000011223344555
Q ss_pred eeccHHHHHHHHHHHcCCCCccee-eeEEcccC
Q 022947 192 TMLDVVRANTFVAEVLGLDPREVD-VPVVGGHA 223 (289)
Q Consensus 192 t~lds~R~~~~lA~~l~v~~~~V~-~~V~G~hg 223 (289)
+.+...++-...++..+++..-++ ..|+|.+.
T Consensus 162 sK~~aE~~v~~~~~~~~l~~vilR~~~VyGp~~ 194 (668)
T PLN02260 162 TKAGAEMLVMAYGRSYGLPVITTRGNNVYGPNQ 194 (668)
T ss_pred HHHHHHHHHHHHHHHcCCCEEEECcccccCcCC
Confidence 555555555555666677766666 45788764
No 102
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=98.10 E-value=3.1e-05 Score=71.91 Aligned_cols=101 Identities=21% Similarity=0.324 Sum_probs=65.7
Q ss_pred CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCch--hHHhhhhccc------CCceEEEEecCCCHHhhhCCCCE
Q 022947 46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP--GVTADISHMD------TNAVVRGFLGQQQLEDALTGMDI 117 (289)
Q Consensus 46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~--g~~~DL~~~~------~~~~v~~~~~t~d~~eal~~aDi 117 (289)
||||+|||+ |.+|+.++..|+..|+ +|.++|+++.. ....+..+.. ....+.. ++++++.++++|+
T Consensus 1 mmkI~iiG~-G~mG~~~a~~L~~~g~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~D~ 74 (325)
T PRK00094 1 MMKIAVLGA-GSWGTALAIVLARNGH--DVTLWARDPEQAAEINADRENPRYLPGIKLPDNLRA---TTDLAEALADADL 74 (325)
T ss_pred CCEEEEECC-CHHHHHHHHHHHhCCC--EEEEEECCHHHHHHHHHcCcccccCCCCcCCCCeEE---eCCHHHHHhCCCE
Confidence 479999998 9999999999999988 89999987521 1111100000 0012222 3466678899999
Q ss_pred EEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhC-CCcEEEEecCCCcc
Q 022947 118 VIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCC-PKAIVNLISNPVNS 168 (289)
Q Consensus 118 VIitag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~-p~aiviv~tNPvd~ 168 (289)
||++... ..+.++++.+..+. |+.+++..+|-++.
T Consensus 75 vi~~v~~----------------~~~~~v~~~l~~~~~~~~~vi~~~ngv~~ 110 (325)
T PRK00094 75 ILVAVPS----------------QALREVLKQLKPLLPPDAPIVWATKGIEP 110 (325)
T ss_pred EEEeCCH----------------HHHHHHHHHHHhhcCCCCEEEEEeecccC
Confidence 9998531 22455555666654 67788878776653
No 103
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=98.09 E-value=3e-05 Score=75.28 Aligned_cols=111 Identities=20% Similarity=0.198 Sum_probs=69.5
Q ss_pred CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchhHHhhhhccc--------------CCceEEEEecCCCHHhh
Q 022947 46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMD--------------TNAVVRGFLGQQQLEDA 111 (289)
Q Consensus 46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g~~~DL~~~~--------------~~~~v~~~~~t~d~~ea 111 (289)
++||+|||. |+||.++|..|+..|+ +|+.+|+++..-..+...... ....+.. +++
T Consensus 3 ~~kI~VIGl-G~~G~~~A~~La~~G~--~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~l~~~~~~g~l~~---~~~---- 72 (415)
T PRK11064 3 FETISVIGL-GYIGLPTAAAFASRQK--QVIGVDINQHAVDTINRGEIHIVEPDLDMVVKTAVEGGYLRA---TTT---- 72 (415)
T ss_pred ccEEEEECc-chhhHHHHHHHHhCCC--EEEEEeCCHHHHHHHHCCCCCcCCCCHHHHHHHHhhcCceee---ecc----
Confidence 579999998 9999999999999998 999999987211111100000 0111221 222
Q ss_pred hCCCCEEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhC-CCcEEEEe-cCCCcccHHH
Q 022947 112 LTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCC-PKAIVNLI-SNPVNSTVPI 172 (289)
Q Consensus 112 l~~aDiVIitag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~-p~aiviv~-tNPvd~~t~~ 172 (289)
.++||+||+|...|.+... ..++..+.+.++.+.++. +..+|+.- |-|....-.+
T Consensus 73 ~~~aDvvii~vptp~~~~~------~~dl~~v~~~~~~i~~~l~~g~iVI~~STv~pgtt~~~ 129 (415)
T PRK11064 73 PEPADAFLIAVPTPFKGDH------EPDLTYVEAAAKSIAPVLKKGDLVILESTSPVGATEQM 129 (415)
T ss_pred cccCCEEEEEcCCCCCCCC------CcChHHHHHHHHHHHHhCCCCCEEEEeCCCCCCHHHHH
Confidence 3589999999988754321 124566667777777765 44554443 5566654433
No 104
>COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=98.08 E-value=5.8e-05 Score=70.68 Aligned_cols=111 Identities=23% Similarity=0.384 Sum_probs=72.1
Q ss_pred CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchhHHhhhhcc--c--C------CceEEEEecCCCHHhhhCCC
Q 022947 46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHM--D--T------NAVVRGFLGQQQLEDALTGM 115 (289)
Q Consensus 46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g~~~DL~~~--~--~------~~~v~~~~~t~d~~eal~~a 115 (289)
++||+|+|+ |.=|.++|..|+.+++ +|.|+.+++. .+.|+... . . .+.+. .++|+.+++++|
T Consensus 1 ~~kI~ViGa-GswGTALA~~la~ng~--~V~lw~r~~~--~~~~i~~~~~N~~yLp~i~lp~~l~---at~Dl~~a~~~a 72 (329)
T COG0240 1 MMKIAVIGA-GSWGTALAKVLARNGH--EVRLWGRDEE--IVAEINETRENPKYLPGILLPPNLK---ATTDLAEALDGA 72 (329)
T ss_pred CceEEEEcC-ChHHHHHHHHHHhcCC--eeEEEecCHH--HHHHHHhcCcCccccCCccCCcccc---cccCHHHHHhcC
Confidence 469999998 9999999999999997 9999998762 22223322 1 1 12233 367899999999
Q ss_pred CEEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhC-CCcEEEEecCCCcc-cHHHHHHHHHHh
Q 022947 116 DIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCC-PKAIVNLISNPVNS-TVPIAAEVFKKV 180 (289)
Q Consensus 116 DiVIitag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~-p~aiviv~tNPvd~-~t~~~~~~~~~~ 180 (289)
|+||+.. | ...+++++++++.+- ++.+++.+|-=.+. ...++++++++.
T Consensus 73 d~iv~av--P--------------s~~~r~v~~~l~~~l~~~~~iv~~sKGie~~t~~l~seii~e~ 123 (329)
T COG0240 73 DIIVIAV--P--------------SQALREVLRQLKPLLLKDAIIVSATKGLEPETGRLLSEIIEEE 123 (329)
T ss_pred CEEEEEC--C--------------hHHHHHHHHHHhhhccCCCeEEEEeccccCCCcchHHHHHHHH
Confidence 9999974 2 344666666665433 56666666532221 112334555554
No 105
>PLN02653 GDP-mannose 4,6-dehydratase
Probab=98.07 E-value=5.2e-05 Score=70.88 Aligned_cols=110 Identities=15% Similarity=0.003 Sum_probs=68.1
Q ss_pred CCCCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCc---hhHHhhhhcc--cCCceEEEE----ecCCCHHhhhCC
Q 022947 44 SPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT---PGVTADISHM--DTNAVVRGF----LGQQQLEDALTG 114 (289)
Q Consensus 44 ~~~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~---~g~~~DL~~~--~~~~~v~~~----~~t~d~~eal~~ 114 (289)
.+.++|.|+||+|++|++++..|+..|. +|+++|+.+. ......+... .....+..+ ....++.+.+++
T Consensus 4 ~~~~~vlVTGatGfiG~~l~~~L~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~ 81 (340)
T PLN02653 4 PPRKVALITGITGQDGSYLTEFLLSKGY--EVHGIIRRSSNFNTQRLDHIYIDPHPNKARMKLHYGDLSDASSLRRWLDD 81 (340)
T ss_pred CCCCEEEEECCCCccHHHHHHHHHHCCC--EEEEEecccccccccchhhhccccccccCceEEEEecCCCHHHHHHHHHH
Confidence 4456999999999999999999999998 8999987541 1111111100 001112211 111234445554
Q ss_pred --CCEEEEcCCCCCCCC--CchhhHHHhhHHHHHHHHHHHHHhCC
Q 022947 115 --MDIVIIPAGVPRKPG--MTRDDLFNINAGIVKTLCEGIAKCCP 155 (289)
Q Consensus 115 --aDiVIitag~~~~~g--~~r~d~~~~N~~i~~~i~~~i~~~~p 155 (289)
.|+||++|+...... ......+..|+.....+++.+.+...
T Consensus 82 ~~~d~Vih~A~~~~~~~~~~~~~~~~~~N~~gt~~ll~~~~~~~~ 126 (340)
T PLN02653 82 IKPDEVYNLAAQSHVAVSFEMPDYTADVVATGALRLLEAVRLHGQ 126 (340)
T ss_pred cCCCEEEECCcccchhhhhhChhHHHHHHHHHHHHHHHHHHHhcc
Confidence 599999998643221 11233456788888999999888763
No 106
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=98.06 E-value=2.2e-05 Score=66.32 Aligned_cols=89 Identities=16% Similarity=0.226 Sum_probs=58.7
Q ss_pred CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchhHHhhhhcccCCceEEEEecCCCHHhhhCCCCEEEEcCCCC
Q 022947 46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVP 125 (289)
Q Consensus 46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~eal~~aDiVIitag~~ 125 (289)
|+||++||. |.+|+.++..|+..|+ +|..+|+++ ....++.+.. ... .+++.++++++|+||.+..
T Consensus 1 m~~Ig~IGl-G~mG~~~a~~L~~~g~--~v~~~d~~~--~~~~~~~~~g----~~~---~~s~~e~~~~~dvvi~~v~-- 66 (163)
T PF03446_consen 1 MMKIGFIGL-GNMGSAMARNLAKAGY--EVTVYDRSP--EKAEALAEAG----AEV---ADSPAEAAEQADVVILCVP-- 66 (163)
T ss_dssp -BEEEEE---SHHHHHHHHHHHHTTT--EEEEEESSH--HHHHHHHHTT----EEE---ESSHHHHHHHBSEEEE-SS--
T ss_pred CCEEEEEch-HHHHHHHHHHHHhcCC--eEEeeccch--hhhhhhHHhh----hhh---hhhhhhHhhcccceEeecc--
Confidence 579999998 9999999999999998 999999875 2223333322 222 2467899999999999842
Q ss_pred CCCCCchhhHHHhhHHHHHHHHHH--HHHhCCCcEEEE
Q 022947 126 RKPGMTRDDLFNINAGIVKTLCEG--IAKCCPKAIVNL 161 (289)
Q Consensus 126 ~~~g~~r~d~~~~N~~i~~~i~~~--i~~~~p~aiviv 161 (289)
+.+.++++... +....+.+.+++
T Consensus 67 -------------~~~~v~~v~~~~~i~~~l~~g~iii 91 (163)
T PF03446_consen 67 -------------DDDAVEAVLFGENILAGLRPGKIII 91 (163)
T ss_dssp -------------SHHHHHHHHHCTTHGGGS-TTEEEE
T ss_pred -------------cchhhhhhhhhhHHhhccccceEEE
Confidence 34556666666 555554444433
No 107
>PRK10675 UDP-galactose-4-epimerase; Provisional
Probab=98.05 E-value=4.6e-05 Score=70.89 Aligned_cols=114 Identities=20% Similarity=0.217 Sum_probs=69.9
Q ss_pred CEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCC--chhHHhhhhccc-CCce-EEE-EecCCCHHhhhC--CCCEEE
Q 022947 47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMD-TNAV-VRG-FLGQQQLEDALT--GMDIVI 119 (289)
Q Consensus 47 ~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~--~~g~~~DL~~~~-~~~~-v~~-~~~t~d~~eal~--~aDiVI 119 (289)
|||.|+||+|++|++++..|+..|+ +|+++|+.. .......+.+.. .... +.. ......+.++++ ++|+||
T Consensus 1 m~vlVtGatG~iG~~l~~~L~~~g~--~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~vv 78 (338)
T PRK10675 1 MRVLVTGGSGYIGSHTCVQLLQNGH--DVVILDNLCNSKRSVLPVIERLGGKHPTFVEGDIRNEALLTEILHDHAIDTVI 78 (338)
T ss_pred CeEEEECCCChHHHHHHHHHHHCCC--eEEEEecCCCchHhHHHHHHHhcCCCceEEEccCCCHHHHHHHHhcCCCCEEE
Confidence 6899999999999999999999887 899998643 111111111111 0111 111 111112334454 689999
Q ss_pred EcCCCCCCC--CCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEec
Q 022947 120 IPAGVPRKP--GMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLIS 163 (289)
Q Consensus 120 itag~~~~~--g~~r~d~~~~N~~i~~~i~~~i~~~~p~aiviv~t 163 (289)
++|+..... .....+.+..|+.....+++.+++..... ++.+|
T Consensus 79 h~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~-~v~~S 123 (338)
T PRK10675 79 HFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAANVKN-LIFSS 123 (338)
T ss_pred ECCccccccchhhCHHHHHHHHHHHHHHHHHHHHHcCCCE-EEEec
Confidence 998764321 12235678889999999999988765333 44443
No 108
>PLN02989 cinnamyl-alcohol dehydrogenase family protein
Probab=98.04 E-value=0.00012 Score=67.78 Aligned_cols=175 Identities=17% Similarity=0.081 Sum_probs=97.0
Q ss_pred CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCch-hHHhhhhcc-cCCceEEEE----ecCCCHHhhhCCCCEEE
Q 022947 46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP-GVTADISHM-DTNAVVRGF----LGQQQLEDALTGMDIVI 119 (289)
Q Consensus 46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~-g~~~DL~~~-~~~~~v~~~----~~t~d~~eal~~aDiVI 119 (289)
.++|.|+||+|++|++++..|+..|+ +|++++++... .....+... ....++..+ ....++.+.+++.|+||
T Consensus 5 ~k~vlVtG~~G~IG~~l~~~L~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~d~vi 82 (325)
T PLN02989 5 GKVVCVTGASGYIASWIVKLLLFRGY--TINATVRDPKDRKKTDHLLALDGAKERLKLFKADLLDEGSFELAIDGCETVF 82 (325)
T ss_pred CCEEEEECCchHHHHHHHHHHHHCCC--EEEEEEcCCcchhhHHHHHhccCCCCceEEEeCCCCCchHHHHHHcCCCEEE
Confidence 46899999999999999999999998 88887766521 111111110 001122221 11234566788999999
Q ss_pred EcCCCCCCC-C-CchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecCCCcccHHH---H-HHHHHHhCCCC------CCc
Q 022947 120 IPAGVPRKP-G-MTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPI---A-AEVFKKVGTYD------PKR 187 (289)
Q Consensus 120 itag~~~~~-g-~~r~d~~~~N~~i~~~i~~~i~~~~p~aiviv~tNPvd~~t~~---~-~~~~~~~~~~~------~~k 187 (289)
++||..... . ..-.+.+..|+.....+.+.+.+...-..|+++|.-....... . ...+.+..-.+ +..
T Consensus 83 h~A~~~~~~~~~~~~~~~~~~n~~g~~~ll~a~~~~~~~~~iv~~SS~~~~~~~~~~~~~~~~~~E~~~~~p~~~~~~~~ 162 (325)
T PLN02989 83 HTASPVAITVKTDPQVELINPAVNGTINVLRTCTKVSSVKRVILTSSMAAVLAPETKLGPNDVVDETFFTNPSFAEERKQ 162 (325)
T ss_pred EeCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHcCCceEEEEecchhheecCCccCCCCCccCcCCCCchhHhccccc
Confidence 999854221 1 1123566789999999999887754223444443321110000 0 00000000011 123
Q ss_pred EEEeeeccHHHHHHHHHHHcCCCCccee-eeEEccc
Q 022947 188 LLGVTMLDVVRANTFVAEVLGLDPREVD-VPVVGGH 222 (289)
Q Consensus 188 viG~t~lds~R~~~~lA~~l~v~~~~V~-~~V~G~h 222 (289)
.+|.+.+...++...+++..+++..-++ ..|+|..
T Consensus 163 ~Y~~sK~~~E~~~~~~~~~~~~~~~ilR~~~vyGp~ 198 (325)
T PLN02989 163 WYVLSKTLAEDAAWRFAKDNEIDLIVLNPGLVTGPI 198 (325)
T ss_pred chHHHHHHHHHHHHHHHHHcCCeEEEEcCCceeCCC
Confidence 4565555455555555667787776676 5588865
No 109
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=98.04 E-value=4.1e-05 Score=71.88 Aligned_cols=104 Identities=19% Similarity=0.187 Sum_probs=64.2
Q ss_pred CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchhHHhh----hhcccCCc-eE--EEEecCCCHHhhhCCCCEE
Q 022947 46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTAD----ISHMDTNA-VV--RGFLGQQQLEDALTGMDIV 118 (289)
Q Consensus 46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g~~~D----L~~~~~~~-~v--~~~~~t~d~~eal~~aDiV 118 (289)
+|||+|||+ |.+|+.++..|...|+ +|.++|+++......+ +.+..... .. ..+..+++. ++++++|+|
T Consensus 2 ~mkI~IiG~-G~mG~~~A~~L~~~G~--~V~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~D~v 77 (341)
T PRK08229 2 MARICVLGA-GSIGCYLGGRLAAAGA--DVTLIGRARIGDELRAHGLTLTDYRGRDVRVPPSAIAFSTDP-AALATADLV 77 (341)
T ss_pred CceEEEECC-CHHHHHHHHHHHhcCC--cEEEEecHHHHHHHHhcCceeecCCCcceecccceeEeccCh-hhccCCCEE
Confidence 579999998 9999999999999997 8999998541111010 00000000 00 001123455 678999999
Q ss_pred EEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHh-CCCcEEEEecCCCccc
Q 022947 119 IIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKC-CPKAIVNLISNPVNST 169 (289)
Q Consensus 119 Iitag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~-~p~aiviv~tNPvd~~ 169 (289)
|++...+ . ..++++.+... .++.+|+..+|..+..
T Consensus 78 il~vk~~----~------------~~~~~~~l~~~~~~~~iii~~~nG~~~~ 113 (341)
T PRK08229 78 LVTVKSA----A------------TADAAAALAGHARPGAVVVSFQNGVRNA 113 (341)
T ss_pred EEEecCc----c------------hHHHHHHHHhhCCCCCEEEEeCCCCCcH
Confidence 9986322 1 12344555555 3677787788987653
No 110
>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]
Probab=98.03 E-value=5.7e-05 Score=66.44 Aligned_cols=96 Identities=20% Similarity=0.294 Sum_probs=64.8
Q ss_pred CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchhHHhhhhcccCCceEEEEecCCCHHhhhCCCCEEEEcCCCC
Q 022947 46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVP 125 (289)
Q Consensus 46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~eal~~aDiVIitag~~ 125 (289)
||+++|+|+ |++|+.++..+...|+ ||.+-..+..+.....-.. ..+.+.. . ..++|.+.+|+||++. |
T Consensus 1 m~~~~i~Gt-GniG~alA~~~a~ag~--eV~igs~r~~~~~~a~a~~--l~~~i~~---~-~~~dA~~~aDVVvLAV--P 69 (211)
T COG2085 1 MMIIAIIGT-GNIGSALALRLAKAGH--EVIIGSSRGPKALAAAAAA--LGPLITG---G-SNEDAAALADVVVLAV--P 69 (211)
T ss_pred CcEEEEecc-ChHHHHHHHHHHhCCC--eEEEecCCChhHHHHHHHh--hcccccc---C-ChHHHHhcCCEEEEec--c
Confidence 579999998 9999999999999998 8888766552211110111 1223332 2 3468999999999984 2
Q ss_pred CCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecCCC
Q 022947 126 RKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPV 166 (289)
Q Consensus 126 ~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~aiviv~tNPv 166 (289)
.+.+.++.+.++..-.+-+||=.|||.
T Consensus 70 --------------~~a~~~v~~~l~~~~~~KIvID~tnp~ 96 (211)
T COG2085 70 --------------FEAIPDVLAELRDALGGKIVIDATNPI 96 (211)
T ss_pred --------------HHHHHhHHHHHHHHhCCeEEEecCCCc
Confidence 233455555666544477888889995
No 111
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=98.03 E-value=8e-05 Score=63.04 Aligned_cols=93 Identities=28% Similarity=0.315 Sum_probs=65.2
Q ss_pred EEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchhHHhhhhcccCCceEEEEec----CCCHHhhhCCCCEEEEcCCC
Q 022947 49 VAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLG----QQQLEDALTGMDIVIIPAGV 124 (289)
Q Consensus 49 I~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g~~~DL~~~~~~~~v~~~~~----t~d~~eal~~aDiVIitag~ 124 (289)
|+|+||+|++|..++..|+.+++ +|+++-+++. ...+ ...+..+.+ .+++.++++++|.||.++|.
T Consensus 1 I~V~GatG~vG~~l~~~L~~~~~--~V~~~~R~~~--~~~~------~~~~~~~~~d~~d~~~~~~al~~~d~vi~~~~~ 70 (183)
T PF13460_consen 1 ILVFGATGFVGRALAKQLLRRGH--EVTALVRSPS--KAED------SPGVEIIQGDLFDPDSVKAALKGADAVIHAAGP 70 (183)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTS--EEEEEESSGG--GHHH------CTTEEEEESCTTCHHHHHHHHTTSSEEEECCHS
T ss_pred eEEECCCChHHHHHHHHHHHCCC--EEEEEecCch--hccc------ccccccceeeehhhhhhhhhhhhcchhhhhhhh
Confidence 78999999999999999999996 9999987652 1121 122222211 12457889999999999876
Q ss_pred CCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEec
Q 022947 125 PRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLIS 163 (289)
Q Consensus 125 ~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~aiviv~t 163 (289)
+.+ +....+.+++.+++.... .++++|
T Consensus 71 ~~~-----------~~~~~~~~~~a~~~~~~~-~~v~~s 97 (183)
T PF13460_consen 71 PPK-----------DVDAAKNIIEAAKKAGVK-RVVYLS 97 (183)
T ss_dssp TTT-----------HHHHHHHHHHHHHHTTSS-EEEEEE
T ss_pred hcc-----------cccccccccccccccccc-cceeee
Confidence 533 267788888888887644 344333
No 112
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=98.02 E-value=3.3e-05 Score=71.19 Aligned_cols=121 Identities=12% Similarity=0.145 Sum_probs=72.1
Q ss_pred CEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchhHHhh--hhcccCCceEEE-EecCCCHHhhhCCCCEEEEcCC
Q 022947 47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTAD--ISHMDTNAVVRG-FLGQQQLEDALTGMDIVIIPAG 123 (289)
Q Consensus 47 ~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g~~~D--L~~~~~~~~v~~-~~~t~d~~eal~~aDiVIitag 123 (289)
|||+|+|+ |.+|..++..|...|+ +|.++++.+......+ +........... ....++.++..+++|+||++..
T Consensus 1 mkI~IiG~-G~iG~~~a~~L~~~g~--~V~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vilavk 77 (305)
T PRK12921 1 MRIAVVGA-GAVGGTFGGRLLEAGR--DVTFLVRPKRAKALRERGLVIRSDHGDAVVPGPVITDPEELTGPFDLVILAVK 77 (305)
T ss_pred CeEEEECC-CHHHHHHHHHHHHCCC--ceEEEecHHHHHHHHhCCeEEEeCCCeEEecceeecCHHHccCCCCEEEEEec
Confidence 68999998 9999999999999887 8999998221111111 000000001100 0012355555689999999853
Q ss_pred CCCCCCCchhhHHHhhHHHHHHHHHHHHHh-CCCcEEEEecCCCcccHHHHHHHHHHhCCCCCCcEEE-eee
Q 022947 124 VPRKPGMTRDDLFNINAGIVKTLCEGIAKC-CPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLG-VTM 193 (289)
Q Consensus 124 ~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~-~p~aiviv~tNPvd~~t~~~~~~~~~~~~~~~~kviG-~t~ 193 (289)
.. .+.++++.+..+ .++..|+.+.|.++.... +.+ .+|++++++ ++.
T Consensus 78 ~~----------------~~~~~~~~l~~~~~~~~~ii~~~nG~~~~~~-----l~~--~~~~~~v~~g~~~ 126 (305)
T PRK12921 78 AY----------------QLDAAIPDLKPLVGEDTVIIPLQNGIGQLEQ-----LEP--YFGRERVLGGVVF 126 (305)
T ss_pred cc----------------CHHHHHHHHHhhcCCCCEEEEeeCCCChHHH-----HHH--hCCcccEEEEEEE
Confidence 21 134455555554 367788888999875432 232 266777774 443
No 113
>PLN02986 cinnamyl-alcohol dehydrogenase family protein
Probab=98.01 E-value=8.7e-05 Score=68.78 Aligned_cols=106 Identities=17% Similarity=0.121 Sum_probs=67.8
Q ss_pred CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCc-hhHHhhhhcc-cCCceEEEEe----cCCCHHhhhCCCCEEE
Q 022947 46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT-PGVTADISHM-DTNAVVRGFL----GQQQLEDALTGMDIVI 119 (289)
Q Consensus 46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~-~g~~~DL~~~-~~~~~v~~~~----~t~d~~eal~~aDiVI 119 (289)
.++|.|+||+|++|++++..|+..|+ +|++..++.. ......+... .....+..+. ....+.++++++|+||
T Consensus 5 ~~~vlVTGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~vi 82 (322)
T PLN02986 5 GKLVCVTGASGYIASWIVKLLLLRGY--TVKATVRDLTDRKKTEHLLALDGAKERLKLFKADLLEESSFEQAIEGCDAVF 82 (322)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEECCCcchHHHHHHHhccCCCCceEEEecCCCCcchHHHHHhCCCEEE
Confidence 35899999999999999999999997 7876655442 1121222111 0011222221 1234667788999999
Q ss_pred EcCCCCCCC-CCchhhHHHhhHHHHHHHHHHHHHh
Q 022947 120 IPAGVPRKP-GMTRDDLFNINAGIVKTLCEGIAKC 153 (289)
Q Consensus 120 itag~~~~~-g~~r~d~~~~N~~i~~~i~~~i~~~ 153 (289)
++|+..... .....+++..|+.....+++.+++.
T Consensus 83 h~A~~~~~~~~~~~~~~~~~nv~gt~~ll~~~~~~ 117 (322)
T PLN02986 83 HTASPVFFTVKDPQTELIDPALKGTINVLNTCKET 117 (322)
T ss_pred EeCCCcCCCCCCchhhhhHHHHHHHHHHHHHHHhc
Confidence 999853211 1122346778999999999988765
No 114
>TIGR01777 yfcH conserved hypothetical protein TIGR01777. This model represents a clade of proteins of unknown function including the E. coli yfcH protein.
Probab=98.01 E-value=3.5e-05 Score=69.69 Aligned_cols=98 Identities=19% Similarity=0.254 Sum_probs=67.5
Q ss_pred EEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchhHHhhhhcccCCceEEEEecCCCHHhhhCCCCEEEEcCCCCCCC
Q 022947 49 VAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVPRKP 128 (289)
Q Consensus 49 I~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~eal~~aDiVIitag~~~~~ 128 (289)
|.|+||+|++|++++..|+..|+ +|+.++++....... .. ..+..... ....++++++|+||+++|.+...
T Consensus 1 vlVtGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~~--~~----~~~~~~~~-~~~~~~~~~~D~Vvh~a~~~~~~ 71 (292)
T TIGR01777 1 ILITGGTGFIGRALTQRLTKDGH--EVTILTRSPPAGANT--KW----EGYKPWAP-LAESEALEGADAVINLAGEPIAD 71 (292)
T ss_pred CEEEcccchhhHHHHHHHHHcCC--EEEEEeCCCCCCCcc--cc----eeeecccc-cchhhhcCCCCEEEECCCCCccc
Confidence 57999999999999999999887 999999876211100 00 00111111 23357789999999999875432
Q ss_pred C----CchhhHHHhhHHHHHHHHHHHHHhCC
Q 022947 129 G----MTRDDLFNINAGIVKTLCEGIAKCCP 155 (289)
Q Consensus 129 g----~~r~d~~~~N~~i~~~i~~~i~~~~p 155 (289)
+ ....++...|+...+.+++.+++...
T Consensus 72 ~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~ 102 (292)
T TIGR01777 72 KRWTEERKQEIRDSRIDTTRALVEAIAAAEQ 102 (292)
T ss_pred ccCCHHHHHHHHhcccHHHHHHHHHHHhcCC
Confidence 2 12345667899999999999998764
No 115
>PRK06194 hypothetical protein; Provisional
Probab=98.01 E-value=7.8e-05 Score=67.69 Aligned_cols=158 Identities=19% Similarity=0.147 Sum_probs=86.4
Q ss_pred CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCc--hhHHhhhhcccCCceEEEEe-cCC---CHHhhhC------
Q 022947 46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTNAVVRGFL-GQQ---QLEDALT------ 113 (289)
Q Consensus 46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~--~g~~~DL~~~~~~~~v~~~~-~t~---d~~eal~------ 113 (289)
+++|.|+||+|++|++++..|+..|. +|+++|++.. .....++... ..++..+. +-+ ++++.++
T Consensus 6 ~k~vlVtGasggIG~~la~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~--~~~~~~~~~D~~d~~~~~~~~~~~~~~~ 81 (287)
T PRK06194 6 GKVAVITGAASGFGLAFARIGAALGM--KLVLADVQQDALDRAVAELRAQ--GAEVLGVRTDVSDAAQVEALADAALERF 81 (287)
T ss_pred CCEEEEeCCccHHHHHHHHHHHHCCC--EEEEEeCChHHHHHHHHHHHhc--CCeEEEEECCCCCHHHHHHHHHHHHHHc
Confidence 45899999999999999999999997 8999998752 2222233221 11222221 111 2223333
Q ss_pred -CCCEEEEcCCCCCCC---CCch---hhHHHhhHHHHH----HHHHHHHHhCCC-----cEEEEecCCCcccHHHHHHHH
Q 022947 114 -GMDIVIIPAGVPRKP---GMTR---DDLFNINAGIVK----TLCEGIAKCCPK-----AIVNLISNPVNSTVPIAAEVF 177 (289)
Q Consensus 114 -~aDiVIitag~~~~~---g~~r---~d~~~~N~~i~~----~i~~~i~~~~p~-----aiviv~tNPvd~~t~~~~~~~ 177 (289)
..|+||++||..... ..+. ...+..|+.... .+.+.+.+.+.+ +.++++|.....
T Consensus 82 g~id~vi~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~~~~~~g~iv~~sS~~~~--------- 152 (287)
T PRK06194 82 GAVHLLFNNAGVGAGGLVWENSLADWEWVLGVNLWGVIHGVRAFTPLMLAAAEKDPAYEGHIVNTASMAGL--------- 152 (287)
T ss_pred CCCCEEEECCCCCCCCCcccCCHHHHHHHHhhccHHHHHHHHHHHHHHHhcCCCCCCCCeEEEEeCChhhc---------
Confidence 479999999874321 1111 223556655444 444445555432 556655543211
Q ss_pred HHhCCCCCCcEEEeeeccHHHHHHHHHHHcCCCCcceeeeEE
Q 022947 178 KKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVV 219 (289)
Q Consensus 178 ~~~~~~~~~kviG~t~lds~R~~~~lA~~l~v~~~~V~~~V~ 219 (289)
.+.+..-.++.+..-...+...+++.++.....+++.++
T Consensus 153 ---~~~~~~~~Y~~sK~a~~~~~~~l~~e~~~~~~~irv~~v 191 (287)
T PRK06194 153 ---LAPPAMGIYNVSKHAVVSLTETLYQDLSLVTDQVGASVL 191 (287)
T ss_pred ---cCCCCCcchHHHHHHHHHHHHHHHHHHhhcCCCeEEEEE
Confidence 123333345554433344556667777665555655444
No 116
>PRK11150 rfaD ADP-L-glycero-D-mannoheptose-6-epimerase; Provisional
Probab=98.00 E-value=8.8e-05 Score=68.24 Aligned_cols=167 Identities=10% Similarity=0.094 Sum_probs=86.2
Q ss_pred EEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchhHHhhhhcccCCceEEEEecCCC-HHhhh-----CCCCEEEEcC
Q 022947 49 VAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQ-LEDAL-----TGMDIVIIPA 122 (289)
Q Consensus 49 I~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g~~~DL~~~~~~~~v~~~~~t~d-~~eal-----~~aDiVIita 122 (289)
|.|+||+|++|++++..|+..|+ ..+.++|..........+.+.. +.......+ +++.+ .++|+||++|
T Consensus 2 ilVtGa~GfiG~~l~~~L~~~g~-~~v~~~~~~~~~~~~~~~~~~~----~~d~~~~~~~~~~~~~~~~~~~~d~Vih~A 76 (308)
T PRK11150 2 IIVTGGAGFIGSNIVKALNDKGI-TDILVVDNLKDGTKFVNLVDLD----IADYMDKEDFLAQIMAGDDFGDIEAIFHEG 76 (308)
T ss_pred EEEecCCcHHHHHHHHHHHhCCC-ceEEEecCCCcchHHHhhhhhh----hhhhhhHHHHHHHHhcccccCCccEEEECc
Confidence 78999999999999999998885 3566778654211101111111 000000011 12222 3799999999
Q ss_pred CCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecCCCcccHHHHHHHHHHhCCCCCCcEEEeeeccHHHHHHH
Q 022947 123 GVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGVTMLDVVRANTF 202 (289)
Q Consensus 123 g~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~aiviv~tNPvd~~t~~~~~~~~~~~~~~~~kviG~t~lds~R~~~~ 202 (289)
+.+.........++..|+....++.+.+.+... .++.+|... +...--.....+.....|...+|.+.....++...
T Consensus 77 ~~~~~~~~~~~~~~~~n~~~t~~ll~~~~~~~~--~~i~~SS~~-vyg~~~~~~~~E~~~~~p~~~Y~~sK~~~E~~~~~ 153 (308)
T PRK11150 77 ACSSTTEWDGKYMMDNNYQYSKELLHYCLEREI--PFLYASSAA-TYGGRTDDFIEEREYEKPLNVYGYSKFLFDEYVRQ 153 (308)
T ss_pred eecCCcCCChHHHHHHHHHHHHHHHHHHHHcCC--cEEEEcchH-HhCcCCCCCCccCCCCCCCCHHHHHHHHHHHHHHH
Confidence 854333333445678899999999999887653 344443311 00000000000001122223344443333333334
Q ss_pred HHHHcCCCCccee-eeEEcccC
Q 022947 203 VAEVLGLDPREVD-VPVVGGHA 223 (289)
Q Consensus 203 lA~~l~v~~~~V~-~~V~G~hg 223 (289)
.++..+++...++ ..++|.+.
T Consensus 154 ~~~~~~~~~~~lR~~~vyG~~~ 175 (308)
T PRK11150 154 ILPEANSQICGFRYFNVYGPRE 175 (308)
T ss_pred HHHHcCCCEEEEeeeeecCCCC
Confidence 4444566666666 55778653
No 117
>PLN02896 cinnamyl-alcohol dehydrogenase
Probab=98.00 E-value=7e-05 Score=70.49 Aligned_cols=174 Identities=17% Similarity=0.075 Sum_probs=95.3
Q ss_pred CCCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchhH--HhhhhcccCCceEEEEe----cCCCHHhhhCCCCEE
Q 022947 45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGV--TADISHMDTNAVVRGFL----GQQQLEDALTGMDIV 118 (289)
Q Consensus 45 ~~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g~--~~DL~~~~~~~~v~~~~----~t~d~~eal~~aDiV 118 (289)
..|||.|+|++|++|++++..|+..|. +|++++.+..... ..++.. ...+..+. ....+.+++++.|+|
T Consensus 9 ~~~~vLVtG~~GfIG~~l~~~L~~~G~--~V~~~~r~~~~~~~~~~~~~~---~~~~~~~~~Dl~~~~~~~~~~~~~d~V 83 (353)
T PLN02896 9 ATGTYCVTGATGYIGSWLVKLLLQRGY--TVHATLRDPAKSLHLLSKWKE---GDRLRLFRADLQEEGSFDEAVKGCDGV 83 (353)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEeCChHHHHHHHHhhcc---CCeEEEEECCCCCHHHHHHHHcCCCEE
Confidence 356899999999999999999999997 8888887642111 111211 11222221 112345667889999
Q ss_pred EEcCCCCCCC---C-Cchh-----hHHHhhHHHHHHHHHHHHHhCCCcEEEEecCCCcccH--------HHHHHHH----
Q 022947 119 IIPAGVPRKP---G-MTRD-----DLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTV--------PIAAEVF---- 177 (289)
Q Consensus 119 Iitag~~~~~---g-~~r~-----d~~~~N~~i~~~i~~~i~~~~p~aiviv~tNPvd~~t--------~~~~~~~---- 177 (289)
|++|+..... . .+-. ..+..|+.....+++.+.++..-..++++|.-.-... ....|-.
T Consensus 84 ih~A~~~~~~~~~~~~~~~~~~~~n~~~~~~~g~~~ll~~~~~~~~~~~~v~~SS~~vyg~~~~~~~~~~~~~E~~~~p~ 163 (353)
T PLN02896 84 FHVAASMEFDVSSDHNNIEEYVQSKVIDPAIKGTLNVLKSCLKSKTVKRVVFTSSISTLTAKDSNGRWRAVVDETCQTPI 163 (353)
T ss_pred EECCccccCCccccccchhhhhhHHhHHHHHHHHHHHHHHHHhcCCccEEEEEechhhccccccCCCCCCccCcccCCcH
Confidence 9999864221 1 1112 2233445778888888776632224444443110000 0000000
Q ss_pred HH-hCCCCCCcEEEeeeccHHHHHHHHHHHcCCCCccee-eeEEcccC
Q 022947 178 KK-VGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVD-VPVVGGHA 223 (289)
Q Consensus 178 ~~-~~~~~~~kviG~t~lds~R~~~~lA~~l~v~~~~V~-~~V~G~hg 223 (289)
.. ....++.-.+|.+.+...++....++..+++..-++ ..|+|.+.
T Consensus 164 ~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~~~~~~~lR~~~vyGp~~ 211 (353)
T PLN02896 164 DHVWNTKASGWVYVLSKLLTEEAAFKYAKENGIDLVSVITTTVAGPFL 211 (353)
T ss_pred HHhhccCCCCccHHHHHHHHHHHHHHHHHHcCCeEEEEcCCcccCCCc
Confidence 00 000112225666666566666667777788777777 44788753
No 118
>PLN02778 3,5-epimerase/4-reductase
Probab=98.00 E-value=8.8e-05 Score=68.65 Aligned_cols=91 Identities=21% Similarity=0.188 Sum_probs=63.1
Q ss_pred CCCCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchhHHhhhhcccCCceEEEEecCCCHHhhhC--CCCEEEEc
Q 022947 44 SPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALT--GMDIVIIP 121 (289)
Q Consensus 44 ~~~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~eal~--~aDiVIit 121 (289)
...|||.|+||+|++|++++..|..+|+ +|++...+ +.+.. .+..+++ +.|+||++
T Consensus 7 ~~~~kiLVtG~tGfiG~~l~~~L~~~g~--~V~~~~~~--------~~~~~------------~v~~~l~~~~~D~ViH~ 64 (298)
T PLN02778 7 SATLKFLIYGKTGWIGGLLGKLCQEQGI--DFHYGSGR--------LENRA------------SLEADIDAVKPTHVFNA 64 (298)
T ss_pred CCCCeEEEECCCCHHHHHHHHHHHhCCC--EEEEecCc--------cCCHH------------HHHHHHHhcCCCEEEEC
Confidence 3457999999999999999999999987 77654211 11100 0112222 68999999
Q ss_pred CCCCCCCC-----CchhhHHHhhHHHHHHHHHHHHHhCCC
Q 022947 122 AGVPRKPG-----MTRDDLFNINAGIVKTLCEGIAKCCPK 156 (289)
Q Consensus 122 ag~~~~~g-----~~r~d~~~~N~~i~~~i~~~i~~~~p~ 156 (289)
|+....+. ....+.+..|+.....+++.+++....
T Consensus 65 Aa~~~~~~~~~~~~~p~~~~~~Nv~gt~~ll~aa~~~gv~ 104 (298)
T PLN02778 65 AGVTGRPNVDWCESHKVETIRANVVGTLTLADVCRERGLV 104 (298)
T ss_pred CcccCCCCchhhhhCHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 98653222 234567889999999999999887543
No 119
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=97.99 E-value=5.6e-05 Score=70.35 Aligned_cols=80 Identities=21% Similarity=0.302 Sum_probs=60.1
Q ss_pred CCCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchhHHhhhhcccCCceEEEEecCCCHHhhhCCCCEEEEcCCC
Q 022947 45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGV 124 (289)
Q Consensus 45 ~~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~eal~~aDiVIitag~ 124 (289)
..|||+|||+ |.+|++++..|...|+ +|.++|+++. .++.++++++|+||++..
T Consensus 3 ~~m~I~iiG~-G~~G~~lA~~l~~~G~--~V~~~~r~~~----------------------~~~~~~~~~advvi~~vp- 56 (308)
T PRK14619 3 QPKTIAILGA-GAWGSTLAGLASANGH--RVRVWSRRSG----------------------LSLAAVLADADVIVSAVS- 56 (308)
T ss_pred CCCEEEEECc-cHHHHHHHHHHHHCCC--EEEEEeCCCC----------------------CCHHHHHhcCCEEEEECC-
Confidence 3579999998 9999999999999998 9999998642 134577889999999842
Q ss_pred CCCCCCchhhHHHhhHHHHHHHHHHHHHh--CCCcEEEEecCC
Q 022947 125 PRKPGMTRDDLFNINAGIVKTLCEGIAKC--CPKAIVNLISNP 165 (289)
Q Consensus 125 ~~~~g~~r~d~~~~N~~i~~~i~~~i~~~--~p~aiviv~tNP 165 (289)
...++++++.+..+ .++.+++..|+.
T Consensus 57 ---------------~~~~~~v~~~l~~~~~~~~~ivi~~s~g 84 (308)
T PRK14619 57 ---------------MKGVRPVAEQVQALNLPPETIIVTATKG 84 (308)
T ss_pred ---------------hHHHHHHHHHHHHhcCCCCcEEEEeCCc
Confidence 12455566666653 467777777763
No 120
>PRK09987 dTDP-4-dehydrorhamnose reductase; Provisional
Probab=97.99 E-value=3.2e-05 Score=71.39 Aligned_cols=99 Identities=17% Similarity=0.177 Sum_probs=65.2
Q ss_pred CEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchhHHhhhhcccCCceEEEEecCCCHHhhhC--CCCEEEEcCCC
Q 022947 47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALT--GMDIVIIPAGV 124 (289)
Q Consensus 47 ~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~eal~--~aDiVIitag~ 124 (289)
|||.|+||+|++|++++..|...| +|+.+|+... ....|+.+. ..+.+.++ +.|+||++|+.
T Consensus 1 m~iLVtG~~GfiGs~l~~~L~~~g---~V~~~~~~~~-~~~~Dl~d~------------~~~~~~~~~~~~D~Vih~Aa~ 64 (299)
T PRK09987 1 MNILLFGKTGQVGWELQRALAPLG---NLIALDVHST-DYCGDFSNP------------EGVAETVRKIRPDVIVNAAAH 64 (299)
T ss_pred CeEEEECCCCHHHHHHHHHhhccC---CEEEeccccc-cccCCCCCH------------HHHHHHHHhcCCCEEEECCcc
Confidence 589999999999999999888877 4777876431 011122221 12344555 58999999986
Q ss_pred CCCC--CCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEec
Q 022947 125 PRKP--GMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLIS 163 (289)
Q Consensus 125 ~~~~--g~~r~d~~~~N~~i~~~i~~~i~~~~p~aiviv~t 163 (289)
.... ..........|+.....+++.+++... .++.+|
T Consensus 65 ~~~~~~~~~~~~~~~~N~~~~~~l~~aa~~~g~--~~v~~S 103 (299)
T PRK09987 65 TAVDKAESEPEFAQLLNATSVEAIAKAANEVGA--WVVHYS 103 (299)
T ss_pred CCcchhhcCHHHHHHHHHHHHHHHHHHHHHcCC--eEEEEc
Confidence 4321 112233456799999999999988753 444443
No 121
>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional
Probab=97.98 E-value=7.1e-05 Score=75.12 Aligned_cols=115 Identities=13% Similarity=0.065 Sum_probs=72.2
Q ss_pred CCCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchh--HHhhhhc-----cc--CCceEEEE----ecCCCHHhh
Q 022947 45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPG--VTADISH-----MD--TNAVVRGF----LGQQQLEDA 111 (289)
Q Consensus 45 ~~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g--~~~DL~~-----~~--~~~~v~~~----~~t~d~~ea 111 (289)
+.+.|.|+||+|++|..++..|+..|+ +|++++++.... ...++.. .. ...++..+ ...+++.++
T Consensus 79 ~gKvVLVTGATGgIG~aLAr~LLk~G~--~Vval~Rn~ekl~~l~~~l~~~~L~~~Ga~~~~~v~iV~gDLtD~esI~~a 156 (576)
T PLN03209 79 DEDLAFVAGATGKVGSRTVRELLKLGF--RVRAGVRSAQRAESLVQSVKQMKLDVEGTQPVEKLEIVECDLEKPDQIGPA 156 (576)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCC--eEEEEeCCHHHHHHHHHHhhhhccccccccccCceEEEEecCCCHHHHHHH
Confidence 456899999999999999999999997 899998876211 1111111 00 00112221 111245567
Q ss_pred hCCCCEEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEE
Q 022947 112 LTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNL 161 (289)
Q Consensus 112 l~~aDiVIitag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~aiviv 161 (289)
+.++|+||+++|........-...+..|......+++.+.+..-..+|++
T Consensus 157 LggiDiVVn~AG~~~~~v~d~~~~~~VN~~Gt~nLl~Aa~~agVgRIV~V 206 (576)
T PLN03209 157 LGNASVVICCIGASEKEVFDVTGPYRIDYLATKNLVDAATVAKVNHFILV 206 (576)
T ss_pred hcCCCEEEEccccccccccchhhHHHHHHHHHHHHHHHHHHhCCCEEEEE
Confidence 89999999999865332111223355677888888888887654444443
No 122
>PLN02583 cinnamoyl-CoA reductase
Probab=97.95 E-value=0.00012 Score=67.39 Aligned_cols=104 Identities=17% Similarity=0.145 Sum_probs=68.6
Q ss_pred CEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchh----HHhhhhcccCCceEEEE----ecCCCHHhhhCCCCEE
Q 022947 47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPG----VTADISHMDTNAVVRGF----LGQQQLEDALTGMDIV 118 (289)
Q Consensus 47 ~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g----~~~DL~~~~~~~~v~~~----~~t~d~~eal~~aDiV 118 (289)
++|.|+||+|++|++++..|+.+|+ +|++++++.... ...++... ...+..+ ....++.+++.++|.|
T Consensus 7 k~vlVTGatG~IG~~lv~~Ll~~G~--~V~~~~R~~~~~~~~~~~~~l~~~--~~~~~~~~~Dl~d~~~~~~~l~~~d~v 82 (297)
T PLN02583 7 KSVCVMDASGYVGFWLVKRLLSRGY--TVHAAVQKNGETEIEKEIRGLSCE--EERLKVFDVDPLDYHSILDALKGCSGL 82 (297)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCC--EEEEEEcCchhhhHHHHHHhcccC--CCceEEEEecCCCHHHHHHHHcCCCEE
Confidence 4799999999999999999999998 888887643111 11222110 1122211 1123456789999999
Q ss_pred EEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhC
Q 022947 119 IIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCC 154 (289)
Q Consensus 119 Iitag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~ 154 (289)
+.+++.+........+++..|+.....+.+.+.+..
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~nv~gt~~ll~aa~~~~ 118 (297)
T PLN02583 83 FCCFDPPSDYPSYDEKMVDVEVRAAHNVLEACAQTD 118 (297)
T ss_pred EEeCccCCcccccHHHHHHHHHHHHHHHHHHHHhcC
Confidence 987654432111234678889999999999988763
No 123
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=97.94 E-value=0.00014 Score=66.85 Aligned_cols=102 Identities=19% Similarity=0.207 Sum_probs=63.9
Q ss_pred CEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchhHHhhhhcccC---CceEEE-EecCCCHHhhhCCCCEEEEcC
Q 022947 47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDT---NAVVRG-FLGQQQLEDALTGMDIVIIPA 122 (289)
Q Consensus 47 ~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g~~~DL~~~~~---~~~v~~-~~~t~d~~eal~~aDiVIita 122 (289)
|||+|+|+ |.+|+.++..|...|+ +|.++|+++..-.. +..... ...... ...+++..+ ++++|+||++.
T Consensus 1 m~I~IiG~-G~~G~~~a~~L~~~g~--~V~~~~r~~~~~~~--~~~~g~~~~~~~~~~~~~~~~~~~~-~~~~d~vila~ 74 (304)
T PRK06522 1 MKIAILGA-GAIGGLFGAALAQAGH--DVTLVARRGAHLDA--LNENGLRLEDGEITVPVLAADDPAE-LGPQDLVILAV 74 (304)
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCC--eEEEEECChHHHHH--HHHcCCcccCCceeecccCCCChhH-cCCCCEEEEec
Confidence 58999998 9999999999999887 99999985411110 111000 001110 011334534 49999999985
Q ss_pred CCCCCCCCchhhHHHhhHHHHHHHHHHHHHh-CCCcEEEEecCCCcccH
Q 022947 123 GVPRKPGMTRDDLFNINAGIVKTLCEGIAKC-CPKAIVNLISNPVNSTV 170 (289)
Q Consensus 123 g~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~-~p~aiviv~tNPvd~~t 170 (289)
... -+.++++.+..+ .++..|+...|.++...
T Consensus 75 k~~----------------~~~~~~~~l~~~l~~~~~iv~~~nG~~~~~ 107 (304)
T PRK06522 75 KAY----------------QLPAALPSLAPLLGPDTPVLFLQNGVGHLE 107 (304)
T ss_pred ccc----------------cHHHHHHHHhhhcCCCCEEEEecCCCCcHH
Confidence 321 134455555554 36778888899987654
No 124
>PTZ00345 glycerol-3-phosphate dehydrogenase; Provisional
Probab=97.92 E-value=0.00011 Score=70.32 Aligned_cols=107 Identities=16% Similarity=0.279 Sum_probs=69.0
Q ss_pred ccccccccccCCCCCCCEEEEEcCCCccHHHHHHHHHhCCC-----ccEEEEEeCCCc---hhHHhhhhcc--c------
Q 022947 31 SGLGRMDCRAKGGSPGFKVAVLGAAGGIGQPLAMLMKINPL-----VSVLHLYDVVNT---PGVTADISHM--D------ 94 (289)
Q Consensus 31 ~~~~~~~~~~~~~~~~~KI~IIGaaG~VGs~la~~L~~~g~-----~~eI~LvD~~~~---~g~~~DL~~~--~------ 94 (289)
|.|.+..|... ||+|||+ |.-|+++|..|...+. ..+|.|+.+++. +..+.++.+. .
T Consensus 2 ~~~~~~~~~~~------ki~ViGa-G~wGtAlA~~l~~n~~~~~~~~~~V~lw~~~~~~~~~~~~~~in~~~~N~~ylp~ 74 (365)
T PTZ00345 2 SLFQKLRCGPL------KVSVIGS-GNWGSAISKVVGENTQRNYIFHNEVRMWVLEEIVEGEKLSDIINTKHENVKYLPG 74 (365)
T ss_pred cchhhcccCCC------eEEEECC-CHHHHHHHHHHHhcCCcccCCCCeEEEEEecccccchHHHHHHHhcCCCcccCCC
Confidence 45666666654 9999998 9999999999998761 138899988762 1223344322 1
Q ss_pred --CCceEEEEecCCCHHhhhCCCCEEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHH--hC-CCcEEEEec
Q 022947 95 --TNAVVRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAK--CC-PKAIVNLIS 163 (289)
Q Consensus 95 --~~~~v~~~~~t~d~~eal~~aDiVIitag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~--~~-p~aiviv~t 163 (289)
...++.. ++|+.+++++||+||++. | ...+++++++++. +- ++.+++.++
T Consensus 75 ~~Lp~ni~~---tsdl~eav~~aDiIvlAV--P--------------sq~l~~vl~~l~~~~~l~~~~~iIS~a 129 (365)
T PTZ00345 75 IKLPDNIVA---VSDLKEAVEDADLLIFVI--P--------------HQFLESVLSQIKENNNLKKHARAISLT 129 (365)
T ss_pred CcCCCceEE---ecCHHHHHhcCCEEEEEc--C--------------hHHHHHHHHHhccccccCCCCEEEEEe
Confidence 1123332 457888999999999974 2 2346666666665 32 344555443
No 125
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=97.90 E-value=0.00015 Score=69.52 Aligned_cols=150 Identities=20% Similarity=0.152 Sum_probs=82.7
Q ss_pred CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCC-chhHHhhhhcccCCceEEEEecCCCHHhhhCCCCEEEEcCCC
Q 022947 46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-TPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGV 124 (289)
Q Consensus 46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~-~~g~~~DL~~~~~~~~v~~~~~t~d~~eal~~aDiVIitag~ 124 (289)
|+||.|||+ |+||+.+|..|++++- .+|.+.|+.. ....+.+..+.......-...+...+.+.+++.|+||.++..
T Consensus 1 m~~ilviGa-G~Vg~~va~~la~~~d-~~V~iAdRs~~~~~~i~~~~~~~v~~~~vD~~d~~al~~li~~~d~VIn~~p~ 78 (389)
T COG1748 1 MMKILVIGA-GGVGSVVAHKLAQNGD-GEVTIADRSKEKCARIAELIGGKVEALQVDAADVDALVALIKDFDLVINAAPP 78 (389)
T ss_pred CCcEEEECC-chhHHHHHHHHHhCCC-ceEEEEeCCHHHHHHHHhhccccceeEEecccChHHHHHHHhcCCEEEEeCCc
Confidence 579999999 9999999999999885 5999999975 222222222111111111111223456888999999999743
Q ss_pred CCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecCCCcccHHHHHHHHHHhCCCCCCcEEEe--e----eccHHH
Q 022947 125 PRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGV--T----MLDVVR 198 (289)
Q Consensus 125 ~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~aiviv~tNPvd~~t~~~~~~~~~~~~~~~~kviG~--t----~lds~R 198 (289)
. .+. .+++.+.+..-+ ++-.|+-.+.. +-.-+.++++ .+.++ | -++..
T Consensus 79 ~------------~~~----~i~ka~i~~gv~--yvDts~~~~~~-~~~~~~a~~A------git~v~~~G~dPGi~nv- 132 (389)
T COG1748 79 F------------VDL----TILKACIKTGVD--YVDTSYYEEPP-WKLDEEAKKA------GITAVLGCGFDPGITNV- 132 (389)
T ss_pred h------------hhH----HHHHHHHHhCCC--EEEcccCCchh-hhhhHHHHHc------CeEEEcccCcCcchHHH-
Confidence 2 122 233333333322 44456555553 3333444433 22222 1 23222
Q ss_pred HHHHHHHHcCCCCcceeee--EEcccC
Q 022947 199 ANTFVAEVLGLDPREVDVP--VVGGHA 223 (289)
Q Consensus 199 ~~~~lA~~l~v~~~~V~~~--V~G~hg 223 (289)
+-...++.+.-..++++.+ -+|+|+
T Consensus 133 ~a~~a~~~~~~~i~si~iy~g~~g~~~ 159 (389)
T COG1748 133 LAAYAAKELFDEIESIDIYVGGLGEHG 159 (389)
T ss_pred HHHHHHHHhhccccEEEEEEecCCCCC
Confidence 3344455555356666655 566888
No 126
>PRK12439 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=97.89 E-value=0.0001 Score=69.72 Aligned_cols=100 Identities=18% Similarity=0.189 Sum_probs=67.6
Q ss_pred CCCCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchhHHhhhhcc----cC-------CceEEEEecCCCHHhhh
Q 022947 44 SPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHM----DT-------NAVVRGFLGQQQLEDAL 112 (289)
Q Consensus 44 ~~~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g~~~DL~~~----~~-------~~~v~~~~~t~d~~eal 112 (289)
+.+|||+|+|+ |.+|+.++..|...+ +++++..++.. ..++... .. ...+.. ++|+.+++
T Consensus 5 ~~~mkI~IiGa-Ga~G~alA~~La~~g---~v~l~~~~~~~--~~~i~~~~~~~~~l~~~~~l~~~i~~---t~d~~~a~ 75 (341)
T PRK12439 5 KREPKVVVLGG-GSWGTTVASICARRG---PTLQWVRSAET--ADDINDNHRNSRYLGNDVVLSDTLRA---TTDFAEAA 75 (341)
T ss_pred cCCCeEEEECC-CHHHHHHHHHHHHCC---CEEEEeCCHHH--HHHHHhcCCCcccCCCCcccCCCeEE---ECCHHHHH
Confidence 34689999998 999999999999887 36777765421 1112211 00 112222 45777889
Q ss_pred CCCCEEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhC-CCcEEEEecCCCcc
Q 022947 113 TGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCC-PKAIVNLISNPVNS 168 (289)
Q Consensus 113 ~~aDiVIitag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~-p~aiviv~tNPvd~ 168 (289)
+++|+||++.- ...+++++++++.+- ++..++.++|-++.
T Consensus 76 ~~aDlVilavp----------------s~~~~~vl~~i~~~l~~~~~vIsl~kGi~~ 116 (341)
T PRK12439 76 NCADVVVMGVP----------------SHGFRGVLTELAKELRPWVPVVSLVKGLEQ 116 (341)
T ss_pred hcCCEEEEEeC----------------HHHHHHHHHHHHhhcCCCCEEEEEEeCCcC
Confidence 99999999852 335667777777654 67788888998764
No 127
>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=97.89 E-value=0.00011 Score=68.72 Aligned_cols=100 Identities=14% Similarity=0.321 Sum_probs=65.2
Q ss_pred CEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchhHHhhhhc--------ccCCceEEEEecCCCHHhhh-CCCCE
Q 022947 47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISH--------MDTNAVVRGFLGQQQLEDAL-TGMDI 117 (289)
Q Consensus 47 ~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g~~~DL~~--------~~~~~~v~~~~~t~d~~eal-~~aDi 117 (289)
|||+|||+ |.+|+.++..|...|+ +|.++++++..-..+.-.+ ......++. ++++.+++ .++|+
T Consensus 1 MkI~IiGa-Ga~G~ala~~L~~~g~--~V~l~~r~~~~~~~i~~~~~~~~~~~~~~~~~~i~~---~~~~~~~~~~~~Dl 74 (326)
T PRK14620 1 MKISILGA-GSFGTAIAIALSSKKI--SVNLWGRNHTTFESINTKRKNLKYLPTCHLPDNISV---KSAIDEVLSDNATC 74 (326)
T ss_pred CEEEEECc-CHHHHHHHHHHHHCCC--eEEEEecCHHHHHHHHHcCCCcccCCCCcCCCCeEE---eCCHHHHHhCCCCE
Confidence 58999998 9999999999999987 8999998652111111111 001112332 34666666 58999
Q ss_pred EEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHH-h-CCCcEEEEecCCCcc
Q 022947 118 VIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAK-C-CPKAIVNLISNPVNS 168 (289)
Q Consensus 118 VIitag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~-~-~p~aiviv~tNPvd~ 168 (289)
||++.- ...+.++++.+.. + .++..++..+|=.+.
T Consensus 75 iiiavk----------------s~~~~~~l~~l~~~~l~~~~~vv~~~nGi~~ 111 (326)
T PRK14620 75 IILAVP----------------TQQLRTICQQLQDCHLKKNTPILICSKGIEK 111 (326)
T ss_pred EEEEeC----------------HHHHHHHHHHHHHhcCCCCCEEEEEEcCeeC
Confidence 999851 2335566666665 4 467777778887643
No 128
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=97.86 E-value=0.00015 Score=67.64 Aligned_cols=121 Identities=16% Similarity=0.227 Sum_probs=71.8
Q ss_pred CCCCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchhHHh---hhhcccCCceEEEEecCCCHHhhhCCCCEEEE
Q 022947 44 SPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTA---DISHMDTNAVVRGFLGQQQLEDALTGMDIVII 120 (289)
Q Consensus 44 ~~~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g~~~---DL~~~~~~~~v~~~~~t~d~~eal~~aDiVIi 120 (289)
+..|||+|+|+ |.||..++..|...|+ +|.+++++..+.... .+........+......++. ++...+|+||+
T Consensus 3 ~~~m~I~IiG~-GaiG~~lA~~L~~~g~--~V~~~~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~D~vil 78 (313)
T PRK06249 3 SETPRIGIIGT-GAIGGFYGAMLARAGF--DVHFLLRSDYEAVRENGLQVDSVHGDFHLPPVQAYRSA-EDMPPCDWVLV 78 (313)
T ss_pred CcCcEEEEECC-CHHHHHHHHHHHHCCC--eEEEEEeCCHHHHHhCCeEEEeCCCCeeecCceEEcch-hhcCCCCEEEE
Confidence 44579999998 9999999999999887 999998865211100 01000000011000011232 45789999999
Q ss_pred cCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHh-CCCcEEEEecCCCcccHHHHHHHHHHhCCCCCCcEEEe
Q 022947 121 PAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKC-CPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGV 191 (289)
Q Consensus 121 tag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~-~p~aiviv~tNPvd~~t~~~~~~~~~~~~~~~~kviG~ 191 (289)
+.-.. + ..+.++.++.. .|++.++...|=++.-- .+.+ -+|+++|++-
T Consensus 79 avK~~----~------------~~~~~~~l~~~~~~~~~iv~lqNG~~~~e-----~l~~--~~~~~~v~~g 127 (313)
T PRK06249 79 GLKTT----A------------NALLAPLIPQVAAPDAKVLLLQNGLGVEE-----QLRE--ILPAEHLLGG 127 (313)
T ss_pred EecCC----C------------hHhHHHHHhhhcCCCCEEEEecCCCCcHH-----HHHH--HCCCCcEEEE
Confidence 85321 1 12344444443 37888888889877542 2333 2677887753
No 129
>TIGR01214 rmlD dTDP-4-dehydrorhamnose reductase. This enzyme catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS core antigen, O-antigen, etc.
Probab=97.86 E-value=9.3e-05 Score=67.11 Aligned_cols=95 Identities=22% Similarity=0.294 Sum_probs=66.7
Q ss_pred EEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchhHHhhhhcccCCceEEEEecCCCHHhhhCCC--CEEEEcCCCC
Q 022947 48 KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGM--DIVIIPAGVP 125 (289)
Q Consensus 48 KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~eal~~a--DiVIitag~~ 125 (289)
||.|+||+|++|++++..|+..|+ +|+++++.. .|+.+. .++.++++++ |+||++++..
T Consensus 1 kilv~G~tG~iG~~l~~~l~~~g~--~v~~~~r~~-----~d~~~~------------~~~~~~~~~~~~d~vi~~a~~~ 61 (287)
T TIGR01214 1 RILITGANGQLGRELVQQLSPEGR--VVVALTSSQ-----LDLTDP------------EALERLLRAIRPDAVVNTAAYT 61 (287)
T ss_pred CEEEEcCCCHHHHHHHHHHHhcCC--EEEEeCCcc-----cCCCCH------------HHHHHHHHhCCCCEEEECCccc
Confidence 689999999999999999998887 899887641 222221 2345566665 9999999864
Q ss_pred CCCC--CchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEec
Q 022947 126 RKPG--MTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLIS 163 (289)
Q Consensus 126 ~~~g--~~r~d~~~~N~~i~~~i~~~i~~~~p~aiviv~t 163 (289)
.... ......+..|+.....+++.+++... .++++|
T Consensus 62 ~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~--~~v~~S 99 (287)
T TIGR01214 62 DVDGAESDPEKAFAVNALAPQNLARAAARHGA--RLVHIS 99 (287)
T ss_pred cccccccCHHHHHHHHHHHHHHHHHHHHHcCC--eEEEEe
Confidence 3221 12345677889999999998877653 344444
No 130
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=97.86 E-value=0.00012 Score=68.57 Aligned_cols=98 Identities=20% Similarity=0.232 Sum_probs=62.2
Q ss_pred CCCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchhHHhhhhcc------cC--CceEEEEecCCCHHhhhCCCC
Q 022947 45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHM------DT--NAVVRGFLGQQQLEDALTGMD 116 (289)
Q Consensus 45 ~~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g~~~DL~~~------~~--~~~v~~~~~t~d~~eal~~aD 116 (289)
.+|||+|||+ |.+|+.++..|+..|+ +|.++|+++.......-.+. .. ..++.. ++++.++++++|
T Consensus 3 ~~m~I~iIG~-G~mG~~ia~~L~~~G~--~V~~~~r~~~~~~~i~~~~~~~~~~~g~~~~~~~~~---~~~~~e~~~~aD 76 (328)
T PRK14618 3 HGMRVAVLGA-GAWGTALAVLAASKGV--PVRLWARRPEFAAALAAERENREYLPGVALPAELYP---TADPEEALAGAD 76 (328)
T ss_pred CCCeEEEECc-CHHHHHHHHHHHHCCC--eEEEEeCCHHHHHHHHHhCcccccCCCCcCCCCeEE---eCCHHHHHcCCC
Confidence 3579999998 9999999999999998 99999997522111111100 00 111222 346778889999
Q ss_pred EEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecCCCc
Q 022947 117 IVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVN 167 (289)
Q Consensus 117 iVIitag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~aiviv~tNPvd 167 (289)
+||++.... .++++++. ..|..+++.++|.++
T Consensus 77 ~Vi~~v~~~----------------~~~~v~~~---l~~~~~vi~~~~Gi~ 108 (328)
T PRK14618 77 FAVVAVPSK----------------ALRETLAG---LPRALGYVSCAKGLA 108 (328)
T ss_pred EEEEECchH----------------HHHHHHHh---cCcCCEEEEEeeccc
Confidence 999985211 12333333 336677787888654
No 131
>PLN02686 cinnamoyl-CoA reductase
Probab=97.86 E-value=0.00016 Score=68.92 Aligned_cols=176 Identities=14% Similarity=0.091 Sum_probs=94.8
Q ss_pred CCCCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCch-hHHhhhhcc---c-CCceEEEE----ecCCCHHhhhCC
Q 022947 44 SPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP-GVTADISHM---D-TNAVVRGF----LGQQQLEDALTG 114 (289)
Q Consensus 44 ~~~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~-g~~~DL~~~---~-~~~~v~~~----~~t~d~~eal~~ 114 (289)
.++++|.|+||+|++|++++..|+..|+ +|+++..+... ....++... . ....+..+ ....++.+++++
T Consensus 51 ~~~k~VLVTGatGfIG~~lv~~L~~~G~--~V~~~~r~~~~~~~l~~l~~~~~~~~~~~~~~~v~~Dl~d~~~l~~~i~~ 128 (367)
T PLN02686 51 AEARLVCVTGGVSFLGLAIVDRLLRHGY--SVRIAVDTQEDKEKLREMEMFGEMGRSNDGIWTVMANLTEPESLHEAFDG 128 (367)
T ss_pred CCCCEEEEECCchHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHhhhccccccCCceEEEEcCCCCHHHHHHHHHh
Confidence 4467999999999999999999999998 88776554311 111122110 0 00112211 112235567889
Q ss_pred CCEEEEcCCCCCCCCC--chhhHHHhhHHHHHHHHHHHHHh-CCCcEEEEecCCC-cccH--------HHHHHHHH--Hh
Q 022947 115 MDIVIIPAGVPRKPGM--TRDDLFNINAGIVKTLCEGIAKC-CPKAIVNLISNPV-NSTV--------PIAAEVFK--KV 180 (289)
Q Consensus 115 aDiVIitag~~~~~g~--~r~d~~~~N~~i~~~i~~~i~~~-~p~aiviv~tNPv-d~~t--------~~~~~~~~--~~ 180 (289)
+|.||++++.....+. ....+...|+...+.+++.+.+. ... .++.+|... .+.- ..+.+-.+ ..
T Consensus 129 ~d~V~hlA~~~~~~~~~~~~~~~~~~nv~gt~~llea~~~~~~v~-r~V~~SS~~~~vyg~~~~~~~~~~i~E~~~~~~~ 207 (367)
T PLN02686 129 CAGVFHTSAFVDPAGLSGYTKSMAELEAKASENVIEACVRTESVR-KCVFTSSLLACVWRQNYPHDLPPVIDEESWSDES 207 (367)
T ss_pred ccEEEecCeeecccccccccchhhhhhHHHHHHHHHHHHhcCCcc-EEEEeccHHHhcccccCCCCCCcccCCCCCCChh
Confidence 9999998875422221 12344567889999999998875 333 333333321 0000 00000000 00
Q ss_pred CCCCCCcEEEeeeccHHHHHHHHHHHcCCCCccee-eeEEccc
Q 022947 181 GTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVD-VPVVGGH 222 (289)
Q Consensus 181 ~~~~~~kviG~t~lds~R~~~~lA~~l~v~~~~V~-~~V~G~h 222 (289)
.-.++...+|.+.+...++-..+++..|++..-++ ..|+|..
T Consensus 208 ~~~~p~~~Y~~sK~~~E~~~~~~~~~~gl~~v~lRp~~vyGp~ 250 (367)
T PLN02686 208 FCRDNKLWYALGKLKAEKAAWRAARGKGLKLATICPALVTGPG 250 (367)
T ss_pred hcccccchHHHHHHHHHHHHHHHHHhcCceEEEEcCCceECCC
Confidence 00011122344444445555555666788777776 5688875
No 132
>PRK07201 short chain dehydrogenase; Provisional
Probab=97.85 E-value=0.00018 Score=73.07 Aligned_cols=111 Identities=14% Similarity=0.113 Sum_probs=69.2
Q ss_pred CEEEEEcCCCccHHHHHHHHHh--CCCccEEEEEeCCCchhHHhhhhcccCCceEEEEecC----------CCHHhhhCC
Q 022947 47 FKVAVLGAAGGIGQPLAMLMKI--NPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQ----------QQLEDALTG 114 (289)
Q Consensus 47 ~KI~IIGaaG~VGs~la~~L~~--~g~~~eI~LvD~~~~~g~~~DL~~~~~~~~v~~~~~t----------~d~~eal~~ 114 (289)
|||.|+||+|++|++++..|+. .+. +|++++++.......++.......++..+.+. .++ +.+++
T Consensus 1 m~ILVTGatGfIG~~lv~~Ll~~~~g~--~V~~l~R~~~~~~~~~~~~~~~~~~v~~~~~Dl~~~~~~~~~~~~-~~l~~ 77 (657)
T PRK07201 1 MRYFVTGGTGFIGRRLVSRLLDRRREA--TVHVLVRRQSLSRLEALAAYWGADRVVPLVGDLTEPGLGLSEADI-AELGD 77 (657)
T ss_pred CeEEEeCCccHHHHHHHHHHHhcCCCC--EEEEEECcchHHHHHHHHHhcCCCcEEEEecccCCccCCcCHHHH-HHhcC
Confidence 5899999999999999998884 555 89999986522222222111000112221110 122 23489
Q ss_pred CCEEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEE
Q 022947 115 MDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNL 161 (289)
Q Consensus 115 aDiVIitag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~aiviv 161 (289)
+|+||++|+.... .....+....|+...+.+++.+.+.....++.+
T Consensus 78 ~D~Vih~Aa~~~~-~~~~~~~~~~nv~gt~~ll~~a~~~~~~~~v~~ 123 (657)
T PRK07201 78 IDHVVHLAAIYDL-TADEEAQRAANVDGTRNVVELAERLQAATFHHV 123 (657)
T ss_pred CCEEEECceeecC-CCCHHHHHHHHhHHHHHHHHHHHhcCCCeEEEE
Confidence 9999999986422 223445667899999999998887654444433
No 133
>PRK07985 oxidoreductase; Provisional
Probab=97.85 E-value=0.00077 Score=62.06 Aligned_cols=146 Identities=21% Similarity=0.137 Sum_probs=81.1
Q ss_pred hhcCCCcccccccccccccc-------------ccccCCC-----CCCCEEEEEcCCCccHHHHHHHHHhCCCccEEEEE
Q 022947 17 AHLHPPTLQIEGESSGLGRM-------------DCRAKGG-----SPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLY 78 (289)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~-----~~~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~Lv 78 (289)
.||..||.|.-+-+.++.++ +|..+.. .+.+++.|+||+|.+|..++..|+..|. +|++.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~vlITGas~gIG~aia~~L~~~G~--~Vi~~ 79 (294)
T PRK07985 2 SHLKDPTTQYYTGEYPKQKQPTPGIQAKMTPVPDCGEKTYVGSGRLKDRKALVTGGDSGIGRAAAIAYAREGA--DVAIS 79 (294)
T ss_pred CcccCcHHHHhccccccccccccCcccccCCcccccccccccCCccCCCEEEEECCCCcHHHHHHHHHHHCCC--EEEEe
Confidence 37777777777666555444 2332211 2236899999999999999999999997 88888
Q ss_pred eCCCc--h-hHHhhhhcccCCceEEEEe-cCCCH----------HhhhCCCCEEEEcCCCCCC--C--CCch---hhHHH
Q 022947 79 DVVNT--P-GVTADISHMDTNAVVRGFL-GQQQL----------EDALTGMDIVIIPAGVPRK--P--GMTR---DDLFN 137 (289)
Q Consensus 79 D~~~~--~-g~~~DL~~~~~~~~v~~~~-~t~d~----------~eal~~aDiVIitag~~~~--~--g~~r---~d~~~ 137 (289)
+.+.. . ....++.... ...+..+. +-+|. .+.+...|++|+.+|.... + ..+. ...+.
T Consensus 80 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~Dl~~~~~~~~~~~~~~~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~ 158 (294)
T PRK07985 80 YLPVEEEDAQDVKKIIEEC-GRKAVLLPGDLSDEKFARSLVHEAHKALGGLDIMALVAGKQVAIPDIADLTSEQFQKTFA 158 (294)
T ss_pred cCCcchhhHHHHHHHHHHc-CCeEEEEEccCCCHHHHHHHHHHHHHHhCCCCEEEECCCCCcCCCChhhCCHHHHHHHHH
Confidence 76531 1 1111111111 11121111 11121 1223567999999986321 1 1122 23466
Q ss_pred hhHHHHHHHHHHHHHhC-CCcEEEEecCC
Q 022947 138 INAGIVKTLCEGIAKCC-PKAIVNLISNP 165 (289)
Q Consensus 138 ~N~~i~~~i~~~i~~~~-p~aiviv~tNP 165 (289)
.|+.....+.+.+..+- ..+.|+++|..
T Consensus 159 ~N~~g~~~l~~~~~~~m~~~g~iv~iSS~ 187 (294)
T PRK07985 159 INVFALFWLTQEAIPLLPKGASIITTSSI 187 (294)
T ss_pred HHhHHHHHHHHHHHHhhhcCCEEEEECCc
Confidence 77765555555554432 34667766643
No 134
>PLN02240 UDP-glucose 4-epimerase
Probab=97.80 E-value=0.00022 Score=66.61 Aligned_cols=114 Identities=19% Similarity=0.139 Sum_probs=70.4
Q ss_pred CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCc--hh---HHhhhhcccCCceEEEE----ecCCCHHhhhC--C
Q 022947 46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PG---VTADISHMDTNAVVRGF----LGQQQLEDALT--G 114 (289)
Q Consensus 46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~--~g---~~~DL~~~~~~~~v~~~----~~t~d~~eal~--~ 114 (289)
.+||.|+||+|++|++++..|+..|. +|+++|+... .. ...++.... ...+..+ ....++.+.++ +
T Consensus 5 ~~~vlItGatG~iG~~l~~~L~~~g~--~V~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~D~~~~~~l~~~~~~~~ 81 (352)
T PLN02240 5 GRTILVTGGAGYIGSHTVLQLLLAGY--KVVVIDNLDNSSEEALRRVKELAGDL-GDNLVFHKVDLRDKEALEKVFASTR 81 (352)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCC--EEEEEeCCCcchHHHHHHHHHhhccc-CccceEEecCcCCHHHHHHHHHhCC
Confidence 46999999999999999999999887 8999986431 11 111111100 1112211 11123334444 6
Q ss_pred CCEEEEcCCCCCCC-C-CchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEec
Q 022947 115 MDIVIIPAGVPRKP-G-MTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLIS 163 (289)
Q Consensus 115 aDiVIitag~~~~~-g-~~r~d~~~~N~~i~~~i~~~i~~~~p~aiviv~t 163 (289)
+|+||++|+..... . ....+.+..|+.....+++.+++.....+ +.+|
T Consensus 82 ~d~vih~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~-v~~S 131 (352)
T PLN02240 82 FDAVIHFAGLKAVGESVAKPLLYYDNNLVGTINLLEVMAKHGCKKL-VFSS 131 (352)
T ss_pred CCEEEEccccCCccccccCHHHHHHHHHHHHHHHHHHHHHcCCCEE-EEEc
Confidence 89999999864221 1 22345778899999999998877654433 4444
No 135
>COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=97.79 E-value=0.00025 Score=67.73 Aligned_cols=115 Identities=20% Similarity=0.251 Sum_probs=75.6
Q ss_pred CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCc------hhHH----hhhhc----ccCCceEEEEecCCCHHhh
Q 022947 46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT------PGVT----ADISH----MDTNAVVRGFLGQQQLEDA 111 (289)
Q Consensus 46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~------~g~~----~DL~~----~~~~~~v~~~~~t~d~~ea 111 (289)
.++|+|||- |+||..+|..++..|. .|+-+|+++. .|+. .++.. .....+++. |+|+ +.
T Consensus 9 ~~~I~ViGL-GYVGLPlA~~fA~~G~--~ViG~DIn~~~Vd~ln~G~~~i~e~~~~~~v~~~v~~g~lra---Ttd~-~~ 81 (436)
T COG0677 9 SATIGVIGL-GYVGLPLAAAFASAGF--KVIGVDINQKKVDKLNRGESYIEEPDLDEVVKEAVESGKLRA---TTDP-EE 81 (436)
T ss_pred ceEEEEEcc-ccccHHHHHHHHHcCC--ceEeEeCCHHHHHHHhCCcceeecCcHHHHHHHHHhcCCceE---ecCh-hh
Confidence 379999998 9999999999999998 9999999971 2221 11111 111335554 4576 66
Q ss_pred hCCCCEEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcE--EEEecCCCcccHHHH
Q 022947 112 LTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAI--VNLISNPVNSTVPIA 173 (289)
Q Consensus 112 l~~aDiVIitag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~ai--viv~tNPvd~~t~~~ 173 (289)
++.||++++|.-+|.+... +-++..+.+-++.|.++-..+- |+=.|-|....-.++
T Consensus 82 l~~~dv~iI~VPTPl~~~~------~pDls~v~~aa~sIa~~L~kG~LVIlEST~~PGTTe~v~ 139 (436)
T COG0677 82 LKECDVFIICVPTPLKKYR------EPDLSYVESAARSIAPVLKKGDLVILESTTPPGTTEEVV 139 (436)
T ss_pred cccCCEEEEEecCCcCCCC------CCChHHHHHHHHHHHHhcCCCCEEEEecCCCCCcHHHHH
Confidence 8899999999887765421 1234556666666666654333 333477777654444
No 136
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=97.79 E-value=0.00014 Score=66.68 Aligned_cols=64 Identities=19% Similarity=0.233 Sum_probs=45.5
Q ss_pred CEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCc-hhHHhhhhcccCCceEEEEecCCCHHhhhCCCCEEEEcC
Q 022947 47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT-PGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPA 122 (289)
Q Consensus 47 ~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~-~g~~~DL~~~~~~~~v~~~~~t~d~~eal~~aDiVIita 122 (289)
|||+|||. |.+|.+++..|...|+ +|.++|+++. ...+.+... +.. .+++. +++++||+||++.
T Consensus 1 m~I~IIG~-G~mG~sla~~L~~~g~--~V~~~d~~~~~~~~a~~~g~------~~~--~~~~~-~~~~~aDlVilav 65 (279)
T PRK07417 1 MKIGIVGL-GLIGGSLGLDLRSLGH--TVYGVSRRESTCERAIERGL------VDE--ASTDL-SLLKDCDLVILAL 65 (279)
T ss_pred CeEEEEee-cHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHCCC------ccc--ccCCH-hHhcCCCEEEEcC
Confidence 58999998 9999999999998887 8999998752 112221111 111 12344 5789999999985
No 137
>TIGR03376 glycerol3P_DH glycerol-3-phosphate dehydrogenase (NAD(+)). Members of this protein family are the eukaryotic enzyme, glycerol-3-phosphate dehydrogenase (NAD(+)) (EC 1.1.1.8). Enzymatic activity for 1.1.1.8 is defined as sn-glycerol 3-phosphate + NAD(+) = glycerone phosphate + NADH. Note the very similar reactions of enzymes defined as EC 1.1.1.94 and 1.1.99.5, assigned to families of proteins in the bacteria.
Probab=97.78 E-value=0.00017 Score=68.43 Aligned_cols=71 Identities=24% Similarity=0.378 Sum_probs=48.2
Q ss_pred EEEEEcCCCccHHHHHHHHHhCC------CccEEEEEeCCC---chhHHhhhh--cccC--------CceEEEEecCCCH
Q 022947 48 KVAVLGAAGGIGQPLAMLMKINP------LVSVLHLYDVVN---TPGVTADIS--HMDT--------NAVVRGFLGQQQL 108 (289)
Q Consensus 48 KI~IIGaaG~VGs~la~~L~~~g------~~~eI~LvD~~~---~~g~~~DL~--~~~~--------~~~v~~~~~t~d~ 108 (289)
||+|||+ |..|.++|..|+.++ +..+|.|+.+++ .......+. |... ..++.. ++|+
T Consensus 1 kI~VIGa-G~wGtALA~~la~ng~~~~~~~~~~V~lw~~~~~~~~~~~~~~in~~~~n~~ylpgi~Lp~~i~a---t~dl 76 (342)
T TIGR03376 1 RVAVVGS-GNWGTAIAKIVAENARALPELFEESVRMWVFEEEIEGRNLTEIINTTHENVKYLPGIKLPANLVA---VPDL 76 (342)
T ss_pred CEEEECc-CHHHHHHHHHHHHcCCcccccCCceEEEEEeccccCCHHHHHHHHhcCCCccccCCCcCCCCeEE---ECCH
Confidence 6999998 999999999999877 113999998844 111222222 1110 112332 4688
Q ss_pred HhhhCCCCEEEEcC
Q 022947 109 EDALTGMDIVIIPA 122 (289)
Q Consensus 109 ~eal~~aDiVIita 122 (289)
++++++||+||++.
T Consensus 77 ~eal~~ADiIIlAV 90 (342)
T TIGR03376 77 VEAAKGADILVFVI 90 (342)
T ss_pred HHHHhcCCEEEEEC
Confidence 89999999999984
No 138
>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....
Probab=97.77 E-value=0.00011 Score=59.06 Aligned_cols=72 Identities=19% Similarity=0.265 Sum_probs=46.5
Q ss_pred EEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchhHHhhhhcc--cCCceEEEEecCCCHHhhhCCCCEEEEcC
Q 022947 48 KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHM--DTNAVVRGFLGQQQLEDALTGMDIVIIPA 122 (289)
Q Consensus 48 KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g~~~DL~~~--~~~~~v~~~~~t~d~~eal~~aDiVIita 122 (289)
||+|+||+|++|+.+...|...+.+.-+.+++.....|+.+.-.+. .....+.... .+. +.+.++|+||+|.
T Consensus 1 rV~IvGAtG~vG~~l~~lL~~hp~~e~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~--~~~-~~~~~~Dvvf~a~ 74 (121)
T PF01118_consen 1 RVAIVGATGYVGRELLRLLAEHPDFELVALVSSSRSAGKPLSEVFPHPKGFEDLSVED--ADP-EELSDVDVVFLAL 74 (121)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTSTEEEEEEEESTTTTTSBHHHTTGGGTTTEEEBEEE--TSG-HHHTTESEEEE-S
T ss_pred CEEEECCCCHHHHHHHHHHhcCCCccEEEeeeeccccCCeeehhccccccccceeEee--cch-hHhhcCCEEEecC
Confidence 7999999999999999999998777667777765533332221211 1112222211 243 6789999999985
No 139
>PRK08643 acetoin reductase; Validated
Probab=97.76 E-value=0.0012 Score=58.74 Aligned_cols=115 Identities=21% Similarity=0.224 Sum_probs=65.2
Q ss_pred CEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCc--hhHHhhhhcccCCceEEEEe-cCCC---HHhh-------hC
Q 022947 47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTNAVVRGFL-GQQQ---LEDA-------LT 113 (289)
Q Consensus 47 ~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~--~g~~~DL~~~~~~~~v~~~~-~t~d---~~ea-------l~ 113 (289)
+++.|+|++|.+|..++..|+..|. +|+++|++.. .....++.+.. ..+..+. +-++ +.+. +.
T Consensus 3 k~~lItGas~giG~~la~~l~~~G~--~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~~~ 78 (256)
T PRK08643 3 KVALVTGAGQGIGFAIAKRLVEDGF--KVAIVDYNEETAQAAADKLSKDG--GKAIAVKADVSDRDQVFAAVRQVVDTFG 78 (256)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC--CeEEEEECCCCCHHHHHHHHHHHHHHcC
Confidence 4789999999999999999999997 8999998762 12222333211 1111111 1111 1122 24
Q ss_pred CCCEEEEcCCCCCC-CC-C-c---hhhHHHhhHHHH----HHHHHHHHHhCCCcEEEEecCC
Q 022947 114 GMDIVIIPAGVPRK-PG-M-T---RDDLFNINAGIV----KTLCEGIAKCCPKAIVNLISNP 165 (289)
Q Consensus 114 ~aDiVIitag~~~~-~g-~-~---r~d~~~~N~~i~----~~i~~~i~~~~p~aiviv~tNP 165 (289)
+.|++|+++|.... +- . + -...+..|+... +.+.+.+.+..+++.++++|..
T Consensus 79 ~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~iv~~sS~ 140 (256)
T PRK08643 79 DLNVVVNNAGVAPTTPIETITEEQFDKVYNINVGGVIWGIQAAQEAFKKLGHGGKIINATSQ 140 (256)
T ss_pred CCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCCEEEEECcc
Confidence 68999999986422 11 1 1 122445565543 3344444443445677776654
No 140
>KOG1429 consensus dTDP-glucose 4-6-dehydratase/UDP-glucuronic acid decarboxylase [Carbohydrate transport and metabolism; Cell wall/membrane/envelope biogenesis]
Probab=97.75 E-value=9.7e-05 Score=67.68 Aligned_cols=111 Identities=16% Similarity=0.094 Sum_probs=67.9
Q ss_pred CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchhHHhhhhcccCCceEEEEecCCCHHhhhCCCCEEEEcCCCC
Q 022947 46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVP 125 (289)
Q Consensus 46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~eal~~aDiVIitag~~ 125 (289)
.+||+|+||+|||||+++-.|+..|+ +|+.+|..-. +....+.|...++...... .+-...-+..+|-|+..|...
T Consensus 27 ~lrI~itGgaGFIgSHLvdkLm~egh--~VIa~Dn~ft-g~k~n~~~~~~~~~fel~~-hdv~~pl~~evD~IyhLAapa 102 (350)
T KOG1429|consen 27 NLRILITGGAGFIGSHLVDKLMTEGH--EVIALDNYFT-GRKENLEHWIGHPNFELIR-HDVVEPLLKEVDQIYHLAAPA 102 (350)
T ss_pred CcEEEEecCcchHHHHHHHHHHhcCC--eEEEEecccc-cchhhcchhccCcceeEEE-eechhHHHHHhhhhhhhccCC
Confidence 47999999999999999999999997 9999998652 2223344544334333221 111235689999999987643
Q ss_pred CCCC--CchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEe
Q 022947 126 RKPG--MTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLI 162 (289)
Q Consensus 126 ~~~g--~~r~d~~~~N~~i~~~i~~~i~~~~p~aiviv~ 162 (289)
..++ .+-.+.+..|.-.........++.+ +.++.+
T Consensus 103 sp~~y~~npvktIktN~igtln~lglakrv~--aR~l~a 139 (350)
T KOG1429|consen 103 SPPHYKYNPVKTIKTNVIGTLNMLGLAKRVG--ARFLLA 139 (350)
T ss_pred CCcccccCccceeeecchhhHHHHHHHHHhC--ceEEEe
Confidence 3222 2223334445444444444444443 455544
No 141
>PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase
Probab=97.70 E-value=0.00046 Score=66.40 Aligned_cols=112 Identities=19% Similarity=0.129 Sum_probs=68.5
Q ss_pred CCCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCch--h--HHhhhhcccCCceEE--EEecCCCHHhhhC----C
Q 022947 45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP--G--VTADISHMDTNAVVR--GFLGQQQLEDALT----G 114 (289)
Q Consensus 45 ~~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~--g--~~~DL~~~~~~~~v~--~~~~t~d~~eal~----~ 114 (289)
+.+||.|+||+|++|+.++..|+.+|+ +|++++++... . ...++........+. .....+++.++++ +
T Consensus 59 ~~~kVLVtGatG~IG~~l~~~Ll~~G~--~V~~l~R~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~~~~ 136 (390)
T PLN02657 59 KDVTVLVVGATGYIGKFVVRELVRRGY--NVVAVAREKSGIRGKNGKEDTKKELPGAEVVFGDVTDADSLRKVLFSEGDP 136 (390)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEEechhhccccchhhHHhhhcCCceEEEeeCCCHHHHHHHHHHhCCC
Confidence 357999999999999999999999997 89999986521 1 011111100011111 1111223445566 5
Q ss_pred CCEEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEE
Q 022947 115 MDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNL 161 (289)
Q Consensus 115 aDiVIitag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~aiviv 161 (289)
+|+||++++.+... ..+.+..|....+.+++.+++..-.-+|++
T Consensus 137 ~D~Vi~~aa~~~~~---~~~~~~vn~~~~~~ll~aa~~~gv~r~V~i 180 (390)
T PLN02657 137 VDVVVSCLASRTGG---VKDSWKIDYQATKNSLDAGREVGAKHFVLL 180 (390)
T ss_pred CcEEEECCccCCCC---CccchhhHHHHHHHHHHHHHHcCCCEEEEE
Confidence 99999988753211 123355678888888888887754434433
No 142
>PLN02253 xanthoxin dehydrogenase
Probab=97.69 E-value=0.001 Score=60.20 Aligned_cols=146 Identities=19% Similarity=0.203 Sum_probs=79.4
Q ss_pred CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCc--hhHHhhhhcccCCceEEEE----ecCCCHHhhh-------
Q 022947 46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTNAVVRGF----LGQQQLEDAL------- 112 (289)
Q Consensus 46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~--~g~~~DL~~~~~~~~v~~~----~~t~d~~eal------- 112 (289)
.+++.|+|++|.+|..++..|+..|. +|+++|+++. .....++.. ..++..+ ....+.++++
T Consensus 18 ~k~~lItGas~gIG~~la~~l~~~G~--~v~~~~~~~~~~~~~~~~~~~---~~~~~~~~~Dl~d~~~~~~~~~~~~~~~ 92 (280)
T PLN02253 18 GKVALVTGGATGIGESIVRLFHKHGA--KVCIVDLQDDLGQNVCDSLGG---EPNVCFFHCDVTVEDDVSRAVDFTVDKF 92 (280)
T ss_pred CCEEEEECCCchHHHHHHHHHHHcCC--EEEEEeCCHHHHHHHHHHhcC---CCceEEEEeecCCHHHHHHHHHHHHHHh
Confidence 45899999999999999999999997 8999998652 111222211 1112211 1111222323
Q ss_pred CCCCEEEEcCCCCCCC-C----Cc---hhhHHHhhHHHHHHHHHHHHHh---CCCcEEEEecCCCcccHHHHHHHHHHhC
Q 022947 113 TGMDIVIIPAGVPRKP-G----MT---RDDLFNINAGIVKTLCEGIAKC---CPKAIVNLISNPVNSTVPIAAEVFKKVG 181 (289)
Q Consensus 113 ~~aDiVIitag~~~~~-g----~~---r~d~~~~N~~i~~~i~~~i~~~---~p~aiviv~tNPvd~~t~~~~~~~~~~~ 181 (289)
...|++|++||..... + .+ -...+..|+.....+.+.+.+. ...+.+++++......
T Consensus 93 g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~ii~isS~~~~~------------ 160 (280)
T PLN02253 93 GTLDIMVNNAGLTGPPCPDIRNVELSEFEKVFDVNVKGVFLGMKHAARIMIPLKKGSIVSLCSVASAI------------ 160 (280)
T ss_pred CCCCEEEECCCcCCCCCCCcccCCHHHHHHHHhHhhHHHHHHHHHHHHHHHhcCCceEEEecChhhcc------------
Confidence 3689999999875321 1 11 1235666765544444433322 1345666655433211
Q ss_pred CCCCCcEEEeeeccHHHHHHHHHHHcC
Q 022947 182 TYDPKRLLGVTMLDVVRANTFVAEVLG 208 (289)
Q Consensus 182 ~~~~~kviG~t~lds~R~~~~lA~~l~ 208 (289)
+.+....++.+..-...+-+.++++++
T Consensus 161 ~~~~~~~Y~~sK~a~~~~~~~la~e~~ 187 (280)
T PLN02253 161 GGLGPHAYTGSKHAVLGLTRSVAAELG 187 (280)
T ss_pred cCCCCcccHHHHHHHHHHHHHHHHHhh
Confidence 122223455544334455666777764
No 143
>PLN02725 GDP-4-keto-6-deoxymannose-3,5-epimerase-4-reductase
Probab=97.68 E-value=0.00038 Score=63.52 Aligned_cols=150 Identities=15% Similarity=0.130 Sum_probs=83.4
Q ss_pred EEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchhHHhhhhcccCCceEEEEecCCCHHhhhC--CCCEEEEcCCCCCC-
Q 022947 51 VLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALT--GMDIVIIPAGVPRK- 127 (289)
Q Consensus 51 IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~eal~--~aDiVIitag~~~~- 127 (289)
|+||+|+||++++..|+..|. +++++.... ..|+.+. .++.+.++ +.|+||++|+....
T Consensus 2 ItGa~GfiG~~l~~~L~~~g~--~v~~~~~~~----~~Dl~~~------------~~l~~~~~~~~~d~Vih~A~~~~~~ 63 (306)
T PLN02725 2 VAGHRGLVGSAIVRKLEALGF--TNLVLRTHK----ELDLTRQ------------ADVEAFFAKEKPTYVILAAAKVGGI 63 (306)
T ss_pred cccCCCcccHHHHHHHHhCCC--cEEEeeccc----cCCCCCH------------HHHHHHHhccCCCEEEEeeeeeccc
Confidence 899999999999999988886 555443211 1233221 12334444 57999999976421
Q ss_pred --CCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecC------CCcccHHHHHHHHHHhCCCCCCc-EEEeeeccHHH
Q 022947 128 --PGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISN------PVNSTVPIAAEVFKKVGTYDPKR-LLGVTMLDVVR 198 (289)
Q Consensus 128 --~g~~r~d~~~~N~~i~~~i~~~i~~~~p~aiviv~tN------Pvd~~t~~~~~~~~~~~~~~~~k-viG~t~lds~R 198 (289)
......+++..|......+++.+++....-+|...|- +...+. |-........|.. .+|.+.....+
T Consensus 64 ~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~i~~SS~~vyg~~~~~~~~----E~~~~~~~~~p~~~~Y~~sK~~~e~ 139 (306)
T PLN02725 64 HANMTYPADFIRENLQIQTNVIDAAYRHGVKKLLFLGSSCIYPKFAPQPIP----ETALLTGPPEPTNEWYAIAKIAGIK 139 (306)
T ss_pred chhhhCcHHHHHHHhHHHHHHHHHHHHcCCCeEEEeCceeecCCCCCCCCC----HHHhccCCCCCCcchHHHHHHHHHH
Confidence 1123456778899999999999998764433333221 111111 1000000111211 24444333333
Q ss_pred HHHHHHHHcCCCCccee-eeEEccc
Q 022947 199 ANTFVAEVLGLDPREVD-VPVVGGH 222 (289)
Q Consensus 199 ~~~~lA~~l~v~~~~V~-~~V~G~h 222 (289)
+.....+..+++...++ ..|+|.+
T Consensus 140 ~~~~~~~~~~~~~~~~R~~~vyG~~ 164 (306)
T PLN02725 140 MCQAYRIQYGWDAISGMPTNLYGPH 164 (306)
T ss_pred HHHHHHHHhCCCEEEEEecceeCCC
Confidence 33444566677777776 4588875
No 144
>PRK07424 bifunctional sterol desaturase/short chain dehydrogenase; Validated
Probab=97.68 E-value=0.00071 Score=65.62 Aligned_cols=129 Identities=21% Similarity=0.186 Sum_probs=75.4
Q ss_pred hcCCCccccccccccccccccccCCCCCCCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchhHHhhhhcccCCc
Q 022947 18 HLHPPTLQIEGESSGLGRMDCRAKGGSPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNA 97 (289)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g~~~DL~~~~~~~ 97 (289)
|.+|.+-..-|-..++.+..-+... .++++|.|+||+|.+|..++..|+..|. +|+++|+++... ...+.......
T Consensus 151 ~~~~~~~~~~~~~~~~d~~~~ta~s-l~gK~VLITGASgGIG~aLA~~La~~G~--~Vi~l~r~~~~l-~~~~~~~~~~v 226 (406)
T PRK07424 151 HFDNQNAYYCGTFTLVDKLMGTALS-LKGKTVAVTGASGTLGQALLKELHQQGA--KVVALTSNSDKI-TLEINGEDLPV 226 (406)
T ss_pred EeccccceeeeeEEEeehhcCcccC-CCCCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEeCCHHHH-HHHHhhcCCCe
Confidence 6667766666666666555433331 2356899999999999999999999997 899998865211 11111111011
Q ss_pred e-EE-EEecCCCHHhhhCCCCEEEEcCCCCCCCCCch---hhHHHhhHHHHHHHHHHH
Q 022947 98 V-VR-GFLGQQQLEDALTGMDIVIIPAGVPRKPGMTR---DDLFNINAGIVKTLCEGI 150 (289)
Q Consensus 98 ~-v~-~~~~t~d~~eal~~aDiVIitag~~~~~g~~r---~d~~~~N~~i~~~i~~~i 150 (289)
. +. .....++..+.+.+.|++|+.+|.......+. .+.+..|......+++.+
T Consensus 227 ~~v~~Dvsd~~~v~~~l~~IDiLInnAGi~~~~~~s~e~~~~~~~vNv~g~i~Li~a~ 284 (406)
T PRK07424 227 KTLHWQVGQEAALAELLEKVDILIINHGINVHGERTPEAINKSYEVNTFSAWRLMELF 284 (406)
T ss_pred EEEEeeCCCHHHHHHHhCCCCEEEECCCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 11 11111234455789999999998653322222 335566765444444443
No 145
>TIGR02197 heptose_epim ADP-L-glycero-D-manno-heptose-6-epimerase. This family consists of examples of ADP-L-glycero-D-mannoheptose-6-epimerase, an enzyme involved in biosynthesis of the inner core of lipopolysaccharide (LPS) for Gram-negative bacteria. This enzyme is homologous to UDP-glucose 4-epimerase (TIGR01179) and belongs to the NAD dependent epimerase/dehydratase family (pfam01370).
Probab=97.68 E-value=0.00035 Score=64.01 Aligned_cols=109 Identities=13% Similarity=0.119 Sum_probs=66.3
Q ss_pred EEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchhHHhhhhcccCCceEEEEecCCCHHhh----hCCCCEEEEcCCC
Q 022947 49 VAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDA----LTGMDIVIIPAGV 124 (289)
Q Consensus 49 I~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~ea----l~~aDiVIitag~ 124 (289)
|.|+||+|++|++++..|...|. .+|+++|.........++........+. ..+.++.. +.+.|+||++|+.
T Consensus 1 ilItGatG~iG~~l~~~L~~~g~-~~v~~~~~~~~~~~~~~~~~~~~~~d~~---~~~~~~~~~~~~~~~~D~vvh~A~~ 76 (314)
T TIGR02197 1 IIVTGGAGFIGSNLVKALNERGI-TDILVVDNLRDGHKFLNLADLVIADYID---KEDFLDRLEKGAFGKIEAIFHQGAC 76 (314)
T ss_pred CEEeCCcchhhHHHHHHHHHcCC-ceEEEEecCCCchhhhhhhheeeeccCc---chhHHHHHHhhccCCCCEEEECccc
Confidence 57999999999999999998884 2788888654211111111100000111 01112222 2489999999986
Q ss_pred CCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEec
Q 022947 125 PRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLIS 163 (289)
Q Consensus 125 ~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~aiviv~t 163 (289)
......+....+..|+.....+++.+.+... .++++|
T Consensus 77 ~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~--~~v~~S 113 (314)
T TIGR02197 77 SDTTETDGEYMMENNYQYSKRLLDWCAEKGI--PFIYAS 113 (314)
T ss_pred cCccccchHHHHHHHHHHHHHHHHHHHHhCC--cEEEEc
Confidence 4322223445677899999999999887653 344444
No 146
>PF01370 Epimerase: NAD dependent epimerase/dehydratase family; InterPro: IPR001509 This family of proteins utilise NAD as a cofactor. The proteins in this family use nucleotide-sugar substrates for a variety of chemical reactions []. It contains the NAD(P)- binding domain (IPR016040 from INTERPRO) which is a commonly found domain with a core Rossmann-type fold. One of the best studied of these proteins is UDP-galactose 4-epimerase which catalyses the conversion of UDP-galactose to UDP-glucose during galactose metabolism [, ].; GO: 0003824 catalytic activity, 0050662 coenzyme binding, 0044237 cellular metabolic process; PDB: 2NNL_D 3C1T_B 3BXX_C 2IOD_C 2X4G_A 2Q1W_B 3SLG_B 1R66_A 1R6D_A 1KEU_B ....
Probab=97.67 E-value=9.6e-05 Score=64.61 Aligned_cols=168 Identities=15% Similarity=0.125 Sum_probs=94.4
Q ss_pred EEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCc-hhHHhhhhcccCCceEEEEecCCCHHhhhCCC--CEEEEcCCCC
Q 022947 49 VAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT-PGVTADISHMDTNAVVRGFLGQQQLEDALTGM--DIVIIPAGVP 125 (289)
Q Consensus 49 I~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~-~g~~~DL~~~~~~~~v~~~~~t~d~~eal~~a--DiVIitag~~ 125 (289)
|.|+||+|++|+.++..|+.+|. +++.+..... ........... .... ......++.+.+++. |.||++|+..
T Consensus 1 IlI~GatG~iG~~l~~~l~~~g~--~v~~~~~~~~~~~~~~~~~~~~-~~~~-dl~~~~~~~~~~~~~~~d~vi~~a~~~ 76 (236)
T PF01370_consen 1 ILITGATGFIGSALVRQLLKKGH--EVIVLSRSSNSESFEEKKLNVE-FVIG-DLTDKEQLEKLLEKANIDVVIHLAAFS 76 (236)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTT--EEEEEESCSTGGHHHHHHTTEE-EEES-ETTSHHHHHHHHHHHTESEEEEEBSSS
T ss_pred EEEEccCCHHHHHHHHHHHHcCC--ccccccccccccccccccceEE-EEEe-eccccccccccccccCceEEEEeeccc
Confidence 78999999999999999999998 6665555442 21111100000 0000 011122455667777 9999999865
Q ss_pred CC--CCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecCCCcccHHHHHHHHHHhCCCCCCcEEEeeeccHHHHHHHH
Q 022947 126 RK--PGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGVTMLDVVRANTFV 203 (289)
Q Consensus 126 ~~--~g~~r~d~~~~N~~i~~~i~~~i~~~~p~aiviv~tNPvd~~t~~~~~~~~~~~~~~~~kviG~t~lds~R~~~~l 203 (289)
.. ....-.+.+..|+...+.+.+.+.+... ..+++++. ..+--..-...+.+.+.+.+...+|.+.....++...+
T Consensus 77 ~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~-~~~i~~sS-~~~y~~~~~~~~~e~~~~~~~~~Y~~~K~~~e~~~~~~ 154 (236)
T PF01370_consen 77 SNPESFEDPEEIIEANVQGTRNLLEAAREAGV-KRFIFLSS-ASVYGDPDGEPIDEDSPINPLSPYGASKRAAEELLRDY 154 (236)
T ss_dssp SHHHHHHSHHHHHHHHHHHHHHHHHHHHHHTT-SEEEEEEE-GGGGTSSSSSSBETTSGCCHSSHHHHHHHHHHHHHHHH
T ss_pred cccccccccccccccccccccccccccccccc-cccccccc-cccccccccccccccccccccccccccccccccccccc
Confidence 31 1123456788899999999999999876 34444443 21100000000000000111122344444445555556
Q ss_pred HHHcCCCCccee-eeEEccc
Q 022947 204 AEVLGLDPREVD-VPVVGGH 222 (289)
Q Consensus 204 A~~l~v~~~~V~-~~V~G~h 222 (289)
.++.+++...++ ..|+|.+
T Consensus 155 ~~~~~~~~~~~R~~~vyG~~ 174 (236)
T PF01370_consen 155 AKKYGLRVTILRPPNVYGPG 174 (236)
T ss_dssp HHHHTSEEEEEEESEEESTT
T ss_pred cccccccccccccccccccc
Confidence 667788888888 5588887
No 147
>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional
Probab=97.65 E-value=0.00038 Score=61.94 Aligned_cols=114 Identities=18% Similarity=0.248 Sum_probs=66.7
Q ss_pred CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCc--hhHHhhhhcccCCceEEEEe-cCCC---HHhhh-------
Q 022947 46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTNAVVRGFL-GQQQ---LEDAL------- 112 (289)
Q Consensus 46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~--~g~~~DL~~~~~~~~v~~~~-~t~d---~~eal------- 112 (289)
.+++.|+|++|.+|++++..|++.|. +|+++++++. .....++.+.. .++..+. +-+| +++++
T Consensus 7 ~~~vlItGasg~iG~~la~~l~~~G~--~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 82 (262)
T PRK13394 7 GKTAVVTGAASGIGKEIALELARAGA--AVAIADLNQDGANAVADEINKAG--GKAIGVAMDVTNEDAVNAGIDKVAERF 82 (262)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCC--eEEEEeCChHHHHHHHHHHHhcC--ceEEEEECCCCCHHHHHHHHHHHHHHc
Confidence 45899999999999999999999998 8999998772 22222333221 1222111 1112 22222
Q ss_pred CCCCEEEEcCCCCCCC---C---CchhhHHHhhHHH----HHHHHHHHHHhCCCcEEEEec
Q 022947 113 TGMDIVIIPAGVPRKP---G---MTRDDLFNINAGI----VKTLCEGIAKCCPKAIVNLIS 163 (289)
Q Consensus 113 ~~aDiVIitag~~~~~---g---~~r~d~~~~N~~i----~~~i~~~i~~~~p~aiviv~t 163 (289)
...|+||+++|..... . +.-.+.+..|+.. .+.+.+.+.+..+.+.++++|
T Consensus 83 ~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~l~~~~~~~~~~~iv~~s 143 (262)
T PRK13394 83 GSVDILVSNAGIQIVNPIENYSFADWKKMQAIHVDGAFLTTKAALKHMYKDDRGGVVIYMG 143 (262)
T ss_pred CCCCEEEECCccCCCCchhhCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhhcCCcEEEEEc
Confidence 3589999999864211 1 1122344566665 666666663334445555554
No 148
>PRK06482 short chain dehydrogenase; Provisional
Probab=97.65 E-value=0.00091 Score=60.40 Aligned_cols=113 Identities=11% Similarity=0.011 Sum_probs=64.6
Q ss_pred CEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchhHHhhhhcccCCceEEEEe-cCCC---HHhh-------hCCC
Q 022947 47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFL-GQQQ---LEDA-------LTGM 115 (289)
Q Consensus 47 ~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g~~~DL~~~~~~~~v~~~~-~t~d---~~ea-------l~~a 115 (289)
++|.|+||+|++|+.++..|+..|. .|+++++++.. ..++.... ...+..+. +-+| +.+. +...
T Consensus 3 k~vlVtGasg~IG~~la~~L~~~g~--~v~~~~r~~~~--~~~~~~~~-~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~i 77 (276)
T PRK06482 3 KTWFITGASSGFGRGMTERLLARGD--RVAATVRRPDA--LDDLKARY-GDRLWVLQLDVTDSAAVRAVVDRAFAALGRI 77 (276)
T ss_pred CEEEEecCCCHHHHHHHHHHHHCCC--EEEEEeCCHHH--HHHHHHhc-cCceEEEEccCCCHHHHHHHHHHHHHHcCCC
Confidence 4799999999999999999999987 88898876511 11111110 01121111 1112 1122 3457
Q ss_pred CEEEEcCCCCCCCC---Cc---hhhHHHhhHHHHHHHHHHHHHh---CCCcEEEEecC
Q 022947 116 DIVIIPAGVPRKPG---MT---RDDLFNINAGIVKTLCEGIAKC---CPKAIVNLISN 164 (289)
Q Consensus 116 DiVIitag~~~~~g---~~---r~d~~~~N~~i~~~i~~~i~~~---~p~aiviv~tN 164 (289)
|+||+++|...... .+ -...+..|+.....+.+.+.++ ...+.++++|.
T Consensus 78 d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~iv~~sS 135 (276)
T PRK06482 78 DVVVSNAGYGLFGAAEELSDAQIRRQIDTNLIGSIQVIRAALPHLRRQGGGRIVQVSS 135 (276)
T ss_pred CEEEECCCCCCCcccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCEEEEEcC
Confidence 99999998753221 11 1235567877777777665322 22344555543
No 149
>PRK12384 sorbitol-6-phosphate dehydrogenase; Provisional
Probab=97.64 E-value=0.0023 Score=57.10 Aligned_cols=118 Identities=13% Similarity=0.168 Sum_probs=67.0
Q ss_pred CEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCc--hhHHhhhhcccCCceEEEEe-cCCC---HHhh-------hC
Q 022947 47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTNAVVRGFL-GQQQ---LEDA-------LT 113 (289)
Q Consensus 47 ~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~--~g~~~DL~~~~~~~~v~~~~-~t~d---~~ea-------l~ 113 (289)
++|.|+|++|.+|.+++..|++.|. +|+++|++.. .....++........+..+. +.++ ...+ +.
T Consensus 3 k~ilItG~~~~IG~~la~~l~~~g~--~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~i~~~~~~~~~~~~ 80 (259)
T PRK12384 3 QVAVVIGGGQTLGAFLCHGLAEEGY--RVAVADINSEKAANVAQEINAEYGEGMAYGFGADATSEQSVLALSRGVDEIFG 80 (259)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHHhcCCceeEEEEccCCCHHHHHHHHHHHHHHcC
Confidence 4799999999999999999999997 8999998752 11112222211001222111 1112 2112 24
Q ss_pred CCCEEEEcCCCCCCC---CCch---hhHHHhhHHH----HHHHHHHHHHhCCCcEEEEecCCC
Q 022947 114 GMDIVIIPAGVPRKP---GMTR---DDLFNINAGI----VKTLCEGIAKCCPKAIVNLISNPV 166 (289)
Q Consensus 114 ~aDiVIitag~~~~~---g~~r---~d~~~~N~~i----~~~i~~~i~~~~p~aiviv~tNPv 166 (289)
..|+||+++|.+... ..+. ...+..|+.. .+.+.+.+.+..+++.++++|...
T Consensus 81 ~id~vv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~~~~~iv~~ss~~ 143 (259)
T PRK12384 81 RVDLLVYNAGIAKAAFITDFQLGDFDRSLQVNLVGYFLCAREFSRLMIRDGIQGRIIQINSKS 143 (259)
T ss_pred CCCEEEECCCcCCCCCcccCCHHHHHHHHHhccHHHHHHHHHHHHHHHhCCCCcEEEEecCcc
Confidence 679999999865322 1122 2234455543 455556555554456677666543
No 150
>PLN02260 probable rhamnose biosynthetic enzyme
Probab=97.64 E-value=0.0004 Score=71.17 Aligned_cols=90 Identities=19% Similarity=0.193 Sum_probs=61.1
Q ss_pred CCCCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchhHHhhhhcccCCceEEEEecCCCHHhhh--CCCCEEEEc
Q 022947 44 SPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDAL--TGMDIVIIP 121 (289)
Q Consensus 44 ~~~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~eal--~~aDiVIit 121 (289)
...|||.|+||+|++|++++..|...|+ ++... . .|+.+.. .+...+ .+.|+||++
T Consensus 378 ~~~mkiLVtGa~G~iG~~l~~~L~~~g~--~v~~~-~-------~~l~d~~------------~v~~~i~~~~pd~Vih~ 435 (668)
T PLN02260 378 KPSLKFLIYGRTGWIGGLLGKLCEKQGI--AYEYG-K-------GRLEDRS------------SLLADIRNVKPTHVFNA 435 (668)
T ss_pred CCCceEEEECCCchHHHHHHHHHHhCCC--eEEee-c-------cccccHH------------HHHHHHHhhCCCEEEEC
Confidence 4568999999999999999999988886 55211 1 1111110 111222 268999999
Q ss_pred CCCCCCC--C---CchhhHHHhhHHHHHHHHHHHHHhCC
Q 022947 122 AGVPRKP--G---MTRDDLFNINAGIVKTLCEGIAKCCP 155 (289)
Q Consensus 122 ag~~~~~--g---~~r~d~~~~N~~i~~~i~~~i~~~~p 155 (289)
|+....+ + ....+.+..|+.....+++.+++...
T Consensus 436 Aa~~~~~~~~~~~~~~~~~~~~N~~gt~~l~~a~~~~g~ 474 (668)
T PLN02260 436 AGVTGRPNVDWCESHKVETIRANVVGTLTLADVCRENGL 474 (668)
T ss_pred CcccCCCCCChHHhCHHHHHHHHhHHHHHHHHHHHHcCC
Confidence 9864322 1 13456678899999999999998764
No 151
>PRK11880 pyrroline-5-carboxylate reductase; Reviewed
Probab=97.64 E-value=0.00041 Score=62.94 Aligned_cols=96 Identities=14% Similarity=0.175 Sum_probs=61.4
Q ss_pred CCEEEEEcCCCccHHHHHHHHHhCCC-ccEEEEEeCCCchhHHhhhhcccCCceEEEEecCCCHHhhhCCCCEEEEcCCC
Q 022947 46 GFKVAVLGAAGGIGQPLAMLMKINPL-VSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGV 124 (289)
Q Consensus 46 ~~KI~IIGaaG~VGs~la~~L~~~g~-~~eI~LvD~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~eal~~aDiVIitag~ 124 (289)
+|||+|||+ |.+|..++..|...+. ..+|.++|+++.. ...+.... .+.. +.+..+.+.++|+||++..
T Consensus 2 mm~I~iIG~-G~mG~~la~~l~~~g~~~~~v~v~~r~~~~--~~~~~~~~---g~~~---~~~~~~~~~~advVil~v~- 71 (267)
T PRK11880 2 MKKIGFIGG-GNMASAIIGGLLASGVPAKDIIVSDPSPEK--RAALAEEY---GVRA---ATDNQEAAQEADVVVLAVK- 71 (267)
T ss_pred CCEEEEEec-hHHHHHHHHHHHhCCCCcceEEEEcCCHHH--HHHHHHhc---CCee---cCChHHHHhcCCEEEEEcC-
Confidence 679999998 9999999998888772 1378999987521 11122110 1111 2345677899999999851
Q ss_pred CCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecCCCc
Q 022947 125 PRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVN 167 (289)
Q Consensus 125 ~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~aiviv~tNPvd 167 (289)
...++++++.+..+. +..|+.++|-+.
T Consensus 72 ---------------~~~~~~v~~~l~~~~-~~~vvs~~~gi~ 98 (267)
T PRK11880 72 ---------------PQVMEEVLSELKGQL-DKLVVSIAAGVT 98 (267)
T ss_pred ---------------HHHHHHHHHHHHhhc-CCEEEEecCCCC
Confidence 123455555555544 456777777664
No 152
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=97.63 E-value=0.00044 Score=64.23 Aligned_cols=69 Identities=23% Similarity=0.217 Sum_probs=48.1
Q ss_pred CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCc-hhHHhhhhcccCCceEEEEecCCCHHhhhCCCCEEEEcCC
Q 022947 46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT-PGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAG 123 (289)
Q Consensus 46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~-~g~~~DL~~~~~~~~v~~~~~t~d~~eal~~aDiVIitag 123 (289)
.+||+|||+ |.+|..++..|...|+..+|.++|+++. ...+.+. . ..... ..+++++++++|+||++..
T Consensus 6 ~~~I~IIG~-G~mG~sla~~l~~~g~~~~V~~~dr~~~~~~~a~~~---g--~~~~~---~~~~~~~~~~aDvViiavp 75 (307)
T PRK07502 6 FDRVALIGI-GLIGSSLARAIRRLGLAGEIVGADRSAETRARAREL---G--LGDRV---TTSAAEAVKGADLVILCVP 75 (307)
T ss_pred CcEEEEEee-CHHHHHHHHHHHhcCCCcEEEEEECCHHHHHHHHhC---C--CCcee---cCCHHHHhcCCCEEEECCC
Confidence 368999998 9999999999988886558999998762 1111111 1 01111 2345678899999999964
No 153
>PRK08267 short chain dehydrogenase; Provisional
Probab=97.62 E-value=0.00043 Score=61.89 Aligned_cols=115 Identities=23% Similarity=0.280 Sum_probs=64.9
Q ss_pred CEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchh--HHhhhhcccCCceEE--EEecCCCHHhhh--------CC
Q 022947 47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPG--VTADISHMDTNAVVR--GFLGQQQLEDAL--------TG 114 (289)
Q Consensus 47 ~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g--~~~DL~~~~~~~~v~--~~~~t~d~~eal--------~~ 114 (289)
+++.|+||+|.+|..++..|+..|. +|+++|++.... ...++... ..... .+....+..+.+ ..
T Consensus 2 k~vlItGasg~iG~~la~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~--~~~~~~~D~~~~~~v~~~~~~~~~~~~~~ 77 (260)
T PRK08267 2 KSIFITGAASGIGRATALLFAAEGW--RVGAYDINEAGLAALAAELGAG--NAWTGALDVTDRAAWDAALADFAAATGGR 77 (260)
T ss_pred cEEEEeCCCchHHHHHHHHHHHCCC--eEEEEeCCHHHHHHHHHHhcCC--ceEEEEecCCCHHHHHHHHHHHHHHcCCC
Confidence 4799999999999999999999997 899999876211 11111110 00111 011111222222 35
Q ss_pred CCEEEEcCCCCCCCC---Cc---hhhHHHhhHHHHHHHHHHHHH---hCCCcEEEEecCC
Q 022947 115 MDIVIIPAGVPRKPG---MT---RDDLFNINAGIVKTLCEGIAK---CCPKAIVNLISNP 165 (289)
Q Consensus 115 aDiVIitag~~~~~g---~~---r~d~~~~N~~i~~~i~~~i~~---~~p~aiviv~tNP 165 (289)
.|+||+++|...... .+ -.+.+..|+.....+.+.+.+ ..+.+.+++++..
T Consensus 78 id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~isS~ 137 (260)
T PRK08267 78 LDVLFNNAGILRGGPFEDIPLEAHDRVIDINVKGVLNGAHAALPYLKATPGARVINTSSA 137 (260)
T ss_pred CCEEEECCCCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCEEEEeCch
Confidence 699999998753221 11 233566677655555554432 2344556665543
No 154
>PRK06180 short chain dehydrogenase; Provisional
Probab=97.62 E-value=0.0014 Score=59.35 Aligned_cols=114 Identities=12% Similarity=0.097 Sum_probs=65.2
Q ss_pred CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchhHHhhhhcccCCceEEEEe-cCCC---HHhhh-------CC
Q 022947 46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFL-GQQQ---LEDAL-------TG 114 (289)
Q Consensus 46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g~~~DL~~~~~~~~v~~~~-~t~d---~~eal-------~~ 114 (289)
+++|.|+||+|.+|++++..|+..|. +|++++++.... .++.... ..++..+. +-+| ..+.+ ..
T Consensus 4 ~~~vlVtGasggiG~~la~~l~~~G~--~V~~~~r~~~~~--~~l~~~~-~~~~~~~~~D~~d~~~~~~~~~~~~~~~~~ 78 (277)
T PRK06180 4 MKTWLITGVSSGFGRALAQAALAAGH--RVVGTVRSEAAR--ADFEALH-PDRALARLLDVTDFDAIDAVVADAEATFGP 78 (277)
T ss_pred CCEEEEecCCChHHHHHHHHHHhCcC--EEEEEeCCHHHH--HHHHhhc-CCCeeEEEccCCCHHHHHHHHHHHHHHhCC
Confidence 45799999999999999999999997 899999875211 1121111 01111110 1111 22222 36
Q ss_pred CCEEEEcCCCCCC-C--CCch---hhHHHhhHHHHHHHHHHHHHh---CCCcEEEEecC
Q 022947 115 MDIVIIPAGVPRK-P--GMTR---DDLFNINAGIVKTLCEGIAKC---CPKAIVNLISN 164 (289)
Q Consensus 115 aDiVIitag~~~~-~--g~~r---~d~~~~N~~i~~~i~~~i~~~---~p~aiviv~tN 164 (289)
.|+||+++|.... + ..+. .+.+..|+.....+.+.+..+ ...+.++++|.
T Consensus 79 ~d~vv~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~iv~iSS 137 (277)
T PRK06180 79 IDVLVNNAGYGHEGAIEESPLAEMRRQFEVNVFGAVAMTKAVLPGMRARRRGHIVNITS 137 (277)
T ss_pred CCEEEECCCccCCcccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhccCCCEEEEEec
Confidence 8999999986421 1 1122 234667777666666654332 22345665554
No 155
>PRK05865 hypothetical protein; Provisional
Probab=97.62 E-value=0.00042 Score=72.76 Aligned_cols=104 Identities=18% Similarity=0.156 Sum_probs=70.8
Q ss_pred CEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchhHHhhhhcccCCceEE-EEecCCCHHhhhCCCCEEEEcCCCC
Q 022947 47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVR-GFLGQQQLEDALTGMDIVIIPAGVP 125 (289)
Q Consensus 47 ~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g~~~DL~~~~~~~~v~-~~~~t~d~~eal~~aDiVIitag~~ 125 (289)
|||.|+||+|++|++++..|+..|+ +|+++|.+.... +.. . ...+. .+....++.++++++|+||++|+..
T Consensus 1 MkILVTGATGfIGs~La~~Ll~~G~--~Vv~l~R~~~~~----~~~-~-v~~v~gDL~D~~~l~~al~~vD~VVHlAa~~ 72 (854)
T PRK05865 1 MRIAVTGASGVLGRGLTARLLSQGH--EVVGIARHRPDS----WPS-S-ADFIAADIRDATAVESAMTGADVVAHCAWVR 72 (854)
T ss_pred CEEEEECCCCHHHHHHHHHHHHCcC--EEEEEECCchhh----ccc-C-ceEEEeeCCCHHHHHHHHhCCCEEEECCCcc
Confidence 5899999999999999999999998 999999764210 000 0 00111 1111234566789999999998753
Q ss_pred CCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecCCC
Q 022947 126 RKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPV 166 (289)
Q Consensus 126 ~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~aiviv~tNPv 166 (289)
.. ....|+.....+++.+++.+.. .++++|.+.
T Consensus 73 ~~-------~~~vNv~GT~nLLeAa~~~gvk-r~V~iSS~~ 105 (854)
T PRK05865 73 GR-------NDHINIDGTANVLKAMAETGTG-RIVFTSSGH 105 (854)
T ss_pred cc-------hHHHHHHHHHHHHHHHHHcCCC-eEEEECCcH
Confidence 21 3467888889999988877543 455666654
No 156
>PRK12320 hypothetical protein; Provisional
Probab=97.62 E-value=0.00033 Score=72.12 Aligned_cols=100 Identities=13% Similarity=0.073 Sum_probs=65.8
Q ss_pred CEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchhHHhhhhcccCCceEEE-EecCCCHHhhhCCCCEEEEcCCCC
Q 022947 47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRG-FLGQQQLEDALTGMDIVIIPAGVP 125 (289)
Q Consensus 47 ~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g~~~DL~~~~~~~~v~~-~~~t~d~~eal~~aDiVIitag~~ 125 (289)
|||.|+||+|++|++++..|+..|+ +|+.+|..+.. ..+.. ...+.. +.. ..+.+++.++|+||++++..
T Consensus 1 MkILVTGAaGFIGs~La~~Ll~~G~--~Vi~ldr~~~~-----~~~~~-ve~v~~Dl~d-~~l~~al~~~D~VIHLAa~~ 71 (699)
T PRK12320 1 MQILVTDATGAVGRSVTRQLIAAGH--TVSGIAQHPHD-----ALDPR-VDYVCASLRN-PVLQELAGEADAVIHLAPVD 71 (699)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCC--EEEEEeCChhh-----cccCC-ceEEEccCCC-HHHHHHhcCCCEEEEcCccC
Confidence 5899999999999999999999998 99999975421 01100 001110 111 12456678999999998753
Q ss_pred CCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEec
Q 022947 126 RKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLIS 163 (289)
Q Consensus 126 ~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~aiviv~t 163 (289)
. .. ....|+....++++.+++.+. .++++|
T Consensus 72 ~--~~----~~~vNv~Gt~nLleAA~~~Gv--RiV~~S 101 (699)
T PRK12320 72 T--SA----PGGVGITGLAHVANAAARAGA--RLLFVS 101 (699)
T ss_pred c--cc----hhhHHHHHHHHHHHHHHHcCC--eEEEEE
Confidence 1 11 123688888889998887654 444444
No 157
>PLN02688 pyrroline-5-carboxylate reductase
Probab=97.61 E-value=0.00035 Score=63.29 Aligned_cols=95 Identities=15% Similarity=0.258 Sum_probs=60.8
Q ss_pred CEEEEEcCCCccHHHHHHHHHhCCC--ccEEEEE-eCCCchhHHhhhhcccCCceEEEEecCCCHHhhhCCCCEEEEcCC
Q 022947 47 FKVAVLGAAGGIGQPLAMLMKINPL--VSVLHLY-DVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAG 123 (289)
Q Consensus 47 ~KI~IIGaaG~VGs~la~~L~~~g~--~~eI~Lv-D~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~eal~~aDiVIitag 123 (289)
|||++||. |.+|..++..|+..++ ..+|+++ |+++.. ...+... .+.. ..+..++++++|+||++.
T Consensus 1 ~kI~~IG~-G~mG~a~a~~L~~~g~~~~~~i~v~~~r~~~~--~~~~~~~----g~~~---~~~~~e~~~~aDvVil~v- 69 (266)
T PLN02688 1 FRVGFIGA-GKMAEAIARGLVASGVVPPSRISTADDSNPAR--RDVFQSL----GVKT---AASNTEVVKSSDVIILAV- 69 (266)
T ss_pred CeEEEECC-cHHHHHHHHHHHHCCCCCcceEEEEeCCCHHH--HHHHHHc----CCEE---eCChHHHHhcCCEEEEEE-
Confidence 68999998 9999999999988875 4578888 765422 1222221 1121 234567789999999996
Q ss_pred CCCCCCCchhhHHHhhHHHHHHHHHHHHHhC-CCcEEEEecCCCc
Q 022947 124 VPRKPGMTRDDLFNINAGIVKTLCEGIAKCC-PKAIVNLISNPVN 167 (289)
Q Consensus 124 ~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~-p~aiviv~tNPvd 167 (289)
.| ..++++.+.+..+. |+.+++..++...
T Consensus 70 ~~---------------~~~~~vl~~l~~~~~~~~~iIs~~~g~~ 99 (266)
T PLN02688 70 KP---------------QVVKDVLTELRPLLSKDKLLVSVAAGIT 99 (266)
T ss_pred Cc---------------HHHHHHHHHHHhhcCCCCEEEEecCCCc
Confidence 12 22444545555543 6666666555553
No 158
>PRK12829 short chain dehydrogenase; Provisional
Probab=97.61 E-value=0.0016 Score=58.02 Aligned_cols=36 Identities=33% Similarity=0.522 Sum_probs=32.4
Q ss_pred CCCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCC
Q 022947 45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN 82 (289)
Q Consensus 45 ~~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~ 82 (289)
+.+++.|+||+|.+|+.++..|+.+|. +|+++++++
T Consensus 10 ~~~~vlItGa~g~iG~~~a~~L~~~g~--~V~~~~r~~ 45 (264)
T PRK12829 10 DGLRVLVTGGASGIGRAIAEAFAEAGA--RVHVCDVSE 45 (264)
T ss_pred CCCEEEEeCCCCcHHHHHHHHHHHCCC--EEEEEeCCH
Confidence 346999999999999999999999998 899999875
No 159
>PRK07680 late competence protein ComER; Validated
Probab=97.61 E-value=0.00048 Score=62.94 Aligned_cols=97 Identities=15% Similarity=0.229 Sum_probs=63.8
Q ss_pred CEEEEEcCCCccHHHHHHHHHhCCCc--cEEEEEeCCCchhHHhhhhcccCCceEEEEecCCCHHhhhCCCCEEEEcCCC
Q 022947 47 FKVAVLGAAGGIGQPLAMLMKINPLV--SVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGV 124 (289)
Q Consensus 47 ~KI~IIGaaG~VGs~la~~L~~~g~~--~eI~LvD~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~eal~~aDiVIitag~ 124 (289)
|||+|||+ |.+|..++..|...+.. .+|.++|++... ...+.+. ...+.. +.+..+.++++|+||++.-
T Consensus 1 m~I~iIG~-G~mG~ala~~L~~~g~~~~~~v~v~~r~~~~--~~~~~~~--~~g~~~---~~~~~~~~~~aDiVilav~- 71 (273)
T PRK07680 1 MNIGFIGT-GNMGTILIEAFLESGAVKPSQLTITNRTPAK--AYHIKER--YPGIHV---AKTIEEVISQSDLIFICVK- 71 (273)
T ss_pred CEEEEECc-cHHHHHHHHHHHHCCCCCcceEEEECCCHHH--HHHHHHH--cCCeEE---ECCHHHHHHhCCEEEEecC-
Confidence 58999998 99999999998887732 478999987521 1222221 112222 2345677899999999851
Q ss_pred CCCCCCchhhHHHhhHHHHHHHHHHHHHhC-CCcEEEEecCCCc
Q 022947 125 PRKPGMTRDDLFNINAGIVKTLCEGIAKCC-PKAIVNLISNPVN 167 (289)
Q Consensus 125 ~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~-p~aiviv~tNPvd 167 (289)
-..+.++++.+..+- ++.+|+-++|++.
T Consensus 72 ---------------p~~~~~vl~~l~~~l~~~~~iis~~ag~~ 100 (273)
T PRK07680 72 ---------------PLDIYPLLQKLAPHLTDEHCLVSITSPIS 100 (273)
T ss_pred ---------------HHHHHHHHHHHHhhcCCCCEEEEECCCCC
Confidence 122445555665543 6778888898874
No 160
>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins. This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.
Probab=97.61 E-value=0.00014 Score=59.36 Aligned_cols=102 Identities=20% Similarity=0.240 Sum_probs=57.6
Q ss_pred CCCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchhHHhhhhcccCCceEEEEecCCCHHhhhCCCCEEEEcCCC
Q 022947 45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGV 124 (289)
Q Consensus 45 ~~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~eal~~aDiVIitag~ 124 (289)
..+||+|||+ |.||.+++..|...|+ +|.-+-... .....++.... ..... .++.+.++++|++|++..
T Consensus 9 ~~l~I~iIGa-GrVG~~La~aL~~ag~--~v~~v~srs-~~sa~~a~~~~--~~~~~----~~~~~~~~~aDlv~iavp- 77 (127)
T PF10727_consen 9 ARLKIGIIGA-GRVGTALARALARAGH--EVVGVYSRS-PASAERAAAFI--GAGAI----LDLEEILRDADLVFIAVP- 77 (127)
T ss_dssp ---EEEEECT-SCCCCHHHHHHHHTTS--EEEEESSCH-H-HHHHHHC----TT---------TTGGGCC-SEEEE-S--
T ss_pred CccEEEEECC-CHHHHHHHHHHHHCCC--eEEEEEeCC-ccccccccccc--ccccc----cccccccccCCEEEEEec-
Confidence 3579999998 9999999999999997 776664322 11112222211 11111 134577899999999952
Q ss_pred CCCCCCchhhHHHhhHHHHHHHHHHHHHh--C-CCcEEEEe--cCCCcccHHH
Q 022947 125 PRKPGMTRDDLFNINAGIVKTLCEGIAKC--C-PKAIVNLI--SNPVNSTVPI 172 (289)
Q Consensus 125 ~~~~g~~r~d~~~~N~~i~~~i~~~i~~~--~-p~aiviv~--tNPvd~~t~~ 172 (289)
+ ..+.+++++|..+ . |..+|+=. +-+++++.++
T Consensus 78 ----D-----------daI~~va~~La~~~~~~~g~iVvHtSGa~~~~vL~p~ 115 (127)
T PF10727_consen 78 ----D-----------DAIAEVAEQLAQYGAWRPGQIVVHTSGALGSDVLAPA 115 (127)
T ss_dssp ----C-----------CHHHHHHHHHHCC--S-TT-EEEES-SS--GGGGHHH
T ss_pred ----h-----------HHHHHHHHHHHHhccCCCCcEEEECCCCChHHhhhhH
Confidence 1 2367788888876 2 55454443 3456677654
No 161
>PRK05717 oxidoreductase; Validated
Probab=97.60 E-value=0.00084 Score=59.89 Aligned_cols=144 Identities=14% Similarity=0.138 Sum_probs=80.3
Q ss_pred CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchhH--HhhhhcccCCceEEEEe-cCCC---HHhh-------h
Q 022947 46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGV--TADISHMDTNAVVRGFL-GQQQ---LEDA-------L 112 (289)
Q Consensus 46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g~--~~DL~~~~~~~~v~~~~-~t~d---~~ea-------l 112 (289)
.++|.|+|++|.+|++++..|+..|. +|+++|+++.... ..++. ..+..+. +..+ ..++ +
T Consensus 10 ~k~vlItG~sg~IG~~~a~~l~~~g~--~v~~~~~~~~~~~~~~~~~~-----~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 82 (255)
T PRK05717 10 GRVALVTGAARGIGLGIAAWLIAEGW--QVVLADLDRERGSKVAKALG-----ENAWFIAMDVADEAQVAAGVAEVLGQF 82 (255)
T ss_pred CCEEEEeCCcchHHHHHHHHHHHcCC--EEEEEcCCHHHHHHHHHHcC-----CceEEEEccCCCHHHHHHHHHHHHHHh
Confidence 35799999999999999999999987 8999998652211 11111 1111110 1111 1111 2
Q ss_pred CCCCEEEEcCCCCCCCC-----Cc---hhhHHHhhHHHHHHHHHHHHHh--CCCcEEEEecCCCcccHHHHHHHHHHhCC
Q 022947 113 TGMDIVIIPAGVPRKPG-----MT---RDDLFNINAGIVKTLCEGIAKC--CPKAIVNLISNPVNSTVPIAAEVFKKVGT 182 (289)
Q Consensus 113 ~~aDiVIitag~~~~~g-----~~---r~d~~~~N~~i~~~i~~~i~~~--~p~aiviv~tNPvd~~t~~~~~~~~~~~~ 182 (289)
...|++|+++|...... .+ -.+.+..|+.....+.+.+.++ ...+.++++|..... .+
T Consensus 83 g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~g~ii~~sS~~~~------------~~ 150 (255)
T PRK05717 83 GRLDALVCNAAIADPHNTTLESLSLAHWNRVLAVNLTGPMLLAKHCAPYLRAHNGAIVNLASTRAR------------QS 150 (255)
T ss_pred CCCCEEEECCCcccCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCcEEEEEcchhhc------------CC
Confidence 35799999998653211 11 1245667777666666666543 234566666543221 12
Q ss_pred CCCCcEEEeeeccHHHHHHHHHHHcC
Q 022947 183 YDPKRLLGVTMLDVVRANTFVAEVLG 208 (289)
Q Consensus 183 ~~~~kviG~t~lds~R~~~~lA~~l~ 208 (289)
.+..-.+|.+..-...+-+.++++++
T Consensus 151 ~~~~~~Y~~sKaa~~~~~~~la~~~~ 176 (255)
T PRK05717 151 EPDTEAYAASKGGLLALTHALAISLG 176 (255)
T ss_pred CCCCcchHHHHHHHHHHHHHHHHHhc
Confidence 22223445543323345667777765
No 162
>KOG1430 consensus C-3 sterol dehydrogenase/3-beta-hydroxysteroid dehydrogenase and related dehydrogenases [Lipid transport and metabolism; Amino acid transport and metabolism]
Probab=97.59 E-value=0.00045 Score=65.76 Aligned_cols=110 Identities=22% Similarity=0.248 Sum_probs=73.4
Q ss_pred CCCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCc-hhHHhhhhcccCCceEEEE----ecCCCHHhhhCCCCEEE
Q 022947 45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT-PGVTADISHMDTNAVVRGF----LGQQQLEDALTGMDIVI 119 (289)
Q Consensus 45 ~~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~-~g~~~DL~~~~~~~~v~~~----~~t~d~~eal~~aDiVI 119 (289)
++.++.|+||+||+|.++...|.+++...||.++|.... ...-.|.... ....++.. ....+...++.++ .|+
T Consensus 3 ~~~~vlVtGG~GflG~hlv~~L~~~~~~~~irv~D~~~~~~~~~~e~~~~-~~~~v~~~~~D~~~~~~i~~a~~~~-~Vv 80 (361)
T KOG1430|consen 3 KKLSVLVTGGSGFLGQHLVQALLENELKLEIRVVDKTPTQSNLPAELTGF-RSGRVTVILGDLLDANSISNAFQGA-VVV 80 (361)
T ss_pred cCCEEEEECCccHHHHHHHHHHHhcccccEEEEeccCccccccchhhhcc-cCCceeEEecchhhhhhhhhhccCc-eEE
Confidence 456899999999999999999999886669999998762 1111111110 11222221 1223567889999 677
Q ss_pred EcCCCCC-CCCC-chhhHHHhhHHHHHHHHHHHHHhCCC
Q 022947 120 IPAGVPR-KPGM-TRDDLFNINAGIVKTLCEGIAKCCPK 156 (289)
Q Consensus 120 itag~~~-~~g~-~r~d~~~~N~~i~~~i~~~i~~~~p~ 156 (289)
+++..+. .-.. .|......|+...+.+.+.+.+.+-+
T Consensus 81 h~aa~~~~~~~~~~~~~~~~vNV~gT~nvi~~c~~~~v~ 119 (361)
T KOG1430|consen 81 HCAASPVPDFVENDRDLAMRVNVNGTLNVIEACKELGVK 119 (361)
T ss_pred EeccccCccccccchhhheeecchhHHHHHHHHHHhCCC
Confidence 7654321 2223 36667788999999999999988644
No 163
>PLN00141 Tic62-NAD(P)-related group II protein; Provisional
Probab=97.58 E-value=0.0006 Score=61.09 Aligned_cols=111 Identities=16% Similarity=0.122 Sum_probs=64.8
Q ss_pred CCCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchhHHhhhhcccCCceEEEE----ec-CCCHHhhh-CCCCEE
Q 022947 45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGF----LG-QQQLEDAL-TGMDIV 118 (289)
Q Consensus 45 ~~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g~~~DL~~~~~~~~v~~~----~~-t~d~~eal-~~aDiV 118 (289)
.++||.|+||+|++|..++..|+..|+ +|+++.++....... +.. ...+..+ .. ..++.+.+ .++|+|
T Consensus 16 ~~~~ilItGasG~iG~~l~~~L~~~g~--~V~~~~R~~~~~~~~-~~~---~~~~~~~~~Dl~d~~~~l~~~~~~~~d~v 89 (251)
T PLN00141 16 KTKTVFVAGATGRTGKRIVEQLLAKGF--AVKAGVRDVDKAKTS-LPQ---DPSLQIVRADVTEGSDKLVEAIGDDSDAV 89 (251)
T ss_pred cCCeEEEECCCcHHHHHHHHHHHhCCC--EEEEEecCHHHHHHh-ccc---CCceEEEEeeCCCCHHHHHHHhhcCCCEE
Confidence 357999999999999999999998887 888776654211111 111 0111111 11 12344566 689999
Q ss_pred EEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEec
Q 022947 119 IIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLIS 163 (289)
Q Consensus 119 Iitag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~aiviv~t 163 (289)
|+++|.....+. .+....|......+++.+++....-+|++.|
T Consensus 90 i~~~g~~~~~~~--~~~~~~n~~~~~~ll~a~~~~~~~~iV~iSS 132 (251)
T PLN00141 90 ICATGFRRSFDP--FAPWKVDNFGTVNLVEACRKAGVTRFILVSS 132 (251)
T ss_pred EECCCCCcCCCC--CCceeeehHHHHHHHHHHHHcCCCEEEEEcc
Confidence 998876422111 1112345555677777777655443444333
No 164
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=97.57 E-value=0.0017 Score=57.89 Aligned_cols=116 Identities=16% Similarity=0.195 Sum_probs=67.2
Q ss_pred CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCc--hhHHhhhhcccCCceEEEE----ecCCCHHhh-------h
Q 022947 46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTNAVVRGF----LGQQQLEDA-------L 112 (289)
Q Consensus 46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~--~g~~~DL~~~~~~~~v~~~----~~t~d~~ea-------l 112 (289)
.++|.|+|++|.+|..++..|+..|. +|+++|+++. .....++... ..++..+ ....++++. +
T Consensus 10 ~k~vlItGa~g~iG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~i~~~--~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 85 (255)
T PRK07523 10 GRRALVTGSSQGIGYALAEGLAQAGA--EVILNGRDPAKLAAAAESLKGQ--GLSAHALAFDVTDHDAVRAAIDAFEAEI 85 (255)
T ss_pred CCEEEEECCcchHHHHHHHHHHHcCC--EEEEEeCCHHHHHHHHHHHHhc--CceEEEEEccCCCHHHHHHHHHHHHHhc
Confidence 45899999999999999999999997 8999998762 1112222221 1112211 111122222 2
Q ss_pred CCCCEEEEcCCCCCCC---CCc---hhhHHHhhHHHHHHHHHHHHHhC---CCcEEEEecCC
Q 022947 113 TGMDIVIIPAGVPRKP---GMT---RDDLFNINAGIVKTLCEGIAKCC---PKAIVNLISNP 165 (289)
Q Consensus 113 ~~aDiVIitag~~~~~---g~~---r~d~~~~N~~i~~~i~~~i~~~~---p~aiviv~tNP 165 (289)
...|+||+++|..... ..+ -.+.+..|+.....+.+.+.++. ..+.++++|..
T Consensus 86 ~~~d~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~iv~iss~ 147 (255)
T PRK07523 86 GPIDILVNNAGMQFRTPLEDFPADAFERLLRTNISSVFYVGQAVARHMIARGAGKIINIASV 147 (255)
T ss_pred CCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCeEEEEEccc
Confidence 4579999999864321 111 13345677665555555555432 34566666654
No 165
>PRK09135 pteridine reductase; Provisional
Probab=97.56 E-value=0.0015 Score=57.39 Aligned_cols=147 Identities=14% Similarity=0.114 Sum_probs=78.2
Q ss_pred CEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCC---chhHHhhhhcccCCceEEEEe-cCCC---HHhhh-------
Q 022947 47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN---TPGVTADISHMDTNAVVRGFL-GQQQ---LEDAL------- 112 (289)
Q Consensus 47 ~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~---~~g~~~DL~~~~~~~~v~~~~-~t~d---~~eal------- 112 (289)
++|.|+||+|++|++++..|+..|. +|+++++.. ......++.+.. ...+..+. +-+| ..+++
T Consensus 7 ~~vlItGa~g~iG~~l~~~l~~~g~--~v~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 83 (249)
T PRK09135 7 KVALITGGARRIGAAIARTLHAAGY--RVAIHYHRSAAEADALAAELNALR-PGSAAALQADLLDPDALPELVAACVAAF 83 (249)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCC--EEEEEcCCCHHHHHHHHHHHHhhc-CCceEEEEcCCCCHHHHHHHHHHHHHHc
Confidence 5899999999999999999999997 899999754 111122232211 01111111 1112 22223
Q ss_pred CCCCEEEEcCCCCCC--CC-Cc---hhhHHHhhHHHHHHHHHHHHHhC--CCcEEEEecCCCcccHHHHHHHHHHhCCCC
Q 022947 113 TGMDIVIIPAGVPRK--PG-MT---RDDLFNINAGIVKTLCEGIAKCC--PKAIVNLISNPVNSTVPIAAEVFKKVGTYD 184 (289)
Q Consensus 113 ~~aDiVIitag~~~~--~g-~~---r~d~~~~N~~i~~~i~~~i~~~~--p~aiviv~tNPvd~~t~~~~~~~~~~~~~~ 184 (289)
...|+||+++|.... .. .+ ..+.+..|+.....+.+.+.++- ..+.++..+. . . ....++
T Consensus 84 ~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~~~~~~-~---~--------~~~~~~ 151 (249)
T PRK09135 84 GRLDALVNNASSFYPTPLGSITEAQWDDLFASNLKAPFFLSQAAAPQLRKQRGAIVNITD-I---H--------AERPLK 151 (249)
T ss_pred CCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhchhHHHHHHHHHHHHhhCCeEEEEEeC-h---h--------hcCCCC
Confidence 357999999985321 11 11 23456677776666666654432 1344443332 1 0 012344
Q ss_pred CCcEEEeeeccHHHHHHHHHHHcC
Q 022947 185 PKRLLGVTMLDVVRANTFVAEVLG 208 (289)
Q Consensus 185 ~~kviG~t~lds~R~~~~lA~~l~ 208 (289)
+...++.+......+-..++++++
T Consensus 152 ~~~~Y~~sK~~~~~~~~~l~~~~~ 175 (249)
T PRK09135 152 GYPVYCAAKAALEMLTRSLALELA 175 (249)
T ss_pred CchhHHHHHHHHHHHHHHHHHHHC
Confidence 444555554434444555666653
No 166
>TIGR01179 galE UDP-glucose-4-epimerase. This enzyme interconverts UDP-glucose and UDP-galactose. A set of related proteins, some of which are tentatively identified as UDP-glucose-4-epimerase in Thermotoga maritima, Bacillus halodurans, and several archaea, but deeply branched from this set and lacking experimental evidence, are excluded from this model and described separately.
Probab=97.56 E-value=0.00064 Score=62.17 Aligned_cols=107 Identities=18% Similarity=0.120 Sum_probs=66.8
Q ss_pred EEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCc-hh-HHhhhhcccCCceEEEEe----cCCCHHhhhC--CCCEEE
Q 022947 48 KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT-PG-VTADISHMDTNAVVRGFL----GQQQLEDALT--GMDIVI 119 (289)
Q Consensus 48 KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~-~g-~~~DL~~~~~~~~v~~~~----~t~d~~eal~--~aDiVI 119 (289)
||.|+||+|++|..++..|...+. +|+++|.... .. ...++... ..+..+. ...+++++++ +.|+||
T Consensus 1 kvlV~GatG~iG~~l~~~l~~~g~--~V~~~~~~~~~~~~~~~~~~~~---~~~~~~~~D~~~~~~~~~~~~~~~~d~vv 75 (328)
T TIGR01179 1 KILVTGGAGYIGSHTVRQLLESGH--EVVVLDNLSNGSPEALKRGERI---TRVTFVEGDLRDRELLDRLFEEHKIDAVI 75 (328)
T ss_pred CEEEeCCCCHHHHHHHHHHHhCCC--eEEEEeCCCccchhhhhhhccc---cceEEEECCCCCHHHHHHHHHhCCCcEEE
Confidence 689999999999999999999887 8888886431 11 11111110 0122111 1123334443 699999
Q ss_pred EcCCCCCCC--CCchhhHHHhhHHHHHHHHHHHHHhCCCcEE
Q 022947 120 IPAGVPRKP--GMTRDDLFNINAGIVKTLCEGIAKCCPKAIV 159 (289)
Q Consensus 120 itag~~~~~--g~~r~d~~~~N~~i~~~i~~~i~~~~p~aiv 159 (289)
.++|..... .....+.+..|+.....+++.+.+.....++
T Consensus 76 ~~ag~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v 117 (328)
T TIGR01179 76 HFAGLIAVGESVQDPLKYYRNNVVNTLNLLEAMQQTGVKKFI 117 (328)
T ss_pred ECccccCcchhhcCchhhhhhhHHHHHHHHHHHHhcCCCEEE
Confidence 999864322 1223445678999999999888876544444
No 167
>PRK08269 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=97.55 E-value=0.00065 Score=63.65 Aligned_cols=110 Identities=16% Similarity=0.181 Sum_probs=71.4
Q ss_pred cHHHHHHHHHhCCCccEEEEEeCCCch----------hH--Hhhhhc----cc---------CCceEEEEecCCCHHhhh
Q 022947 58 IGQPLAMLMKINPLVSVLHLYDVVNTP----------GV--TADISH----MD---------TNAVVRGFLGQQQLEDAL 112 (289)
Q Consensus 58 VGs~la~~L~~~g~~~eI~LvD~~~~~----------g~--~~DL~~----~~---------~~~~v~~~~~t~d~~eal 112 (289)
+|+.+|..++..|+ +|+|+|+++.. +. +.+..+ .. ...+++... +.++++++
T Consensus 1 MG~giA~~~a~~G~--~V~l~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~-~~~~~~a~ 77 (314)
T PRK08269 1 MGQGIALAFAFAGH--DVTLIDFKPRDAAGWRALDAEARAEIERTLAALVALGRIDAAQADAVLARIAVVA-RDGAADAL 77 (314)
T ss_pred CcHHHHHHHHhCCC--eEEEEeCCcccchhhHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEeec-CcchHHHh
Confidence 57889999999998 99999998721 11 111100 00 012444321 22466889
Q ss_pred CCCCEEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhC-CCcEEEEecCCCcccHHHHHHHHHHhCCCCCCcEEEe
Q 022947 113 TGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCC-PKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGV 191 (289)
Q Consensus 113 ~~aDiVIitag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~-p~aiviv~tNPvd~~t~~~~~~~~~~~~~~~~kviG~ 191 (289)
++||+||.++ .+|.++.+++...+.+.+ |++++ .||.+..... ++ ..... .|+|++|+
T Consensus 78 ~~aD~ViEav--------------~E~~~~K~~~f~~l~~~~~~~~il--aSntS~~~~~---~l-a~~~~-~p~r~~g~ 136 (314)
T PRK08269 78 ADADLVFEAV--------------PEVLDAKREALRWLGRHVDADAII--ASTTSTFLVT---DL-QRHVA-HPERFLNA 136 (314)
T ss_pred ccCCEEEECC--------------cCCHHHHHHHHHHHHhhCCCCcEE--EEccccCCHH---HH-HhhcC-CcccEEEE
Confidence 9999999984 357888899999999987 66666 7888775442 22 22333 46788887
No 168
>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=97.55 E-value=0.0033 Score=55.45 Aligned_cols=35 Identities=26% Similarity=0.284 Sum_probs=32.0
Q ss_pred CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCC
Q 022947 46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN 82 (289)
Q Consensus 46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~ 82 (289)
.++|.|+||+|.+|..++..|++.|. +|+++++++
T Consensus 5 ~~~vlItGasg~iG~~l~~~l~~~G~--~V~~~~r~~ 39 (251)
T PRK07231 5 GKVAIVTGASSGIGEGIARRFAAEGA--RVVVTDRNE 39 (251)
T ss_pred CcEEEEECCCChHHHHHHHHHHHCCC--EEEEEeCCH
Confidence 45899999999999999999999997 899999876
No 169
>COG2910 Putative NADH-flavin reductase [General function prediction only]
Probab=97.55 E-value=0.00061 Score=58.89 Aligned_cols=102 Identities=19% Similarity=0.242 Sum_probs=64.0
Q ss_pred CEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchhHH---hhhhcccCCceEEEEecCCCHHhhhCCCCEEEEcCC
Q 022947 47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVT---ADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAG 123 (289)
Q Consensus 47 ~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g~~---~DL~~~~~~~~v~~~~~t~d~~eal~~aDiVIitag 123 (289)
|||+||||+|.+|+.++..++.+|+ ||+.+=+++.+-.+ .-+.+.+ + + ..+.+.+++.+-|+||-+.|
T Consensus 1 mKIaiIgAsG~~Gs~i~~EA~~RGH--eVTAivRn~~K~~~~~~~~i~q~D----i--f-d~~~~a~~l~g~DaVIsA~~ 71 (211)
T COG2910 1 MKIAIIGASGKAGSRILKEALKRGH--EVTAIVRNASKLAARQGVTILQKD----I--F-DLTSLASDLAGHDAVISAFG 71 (211)
T ss_pred CeEEEEecCchhHHHHHHHHHhCCC--eeEEEEeChHhccccccceeeccc----c--c-ChhhhHhhhcCCceEEEecc
Confidence 7999999999999999999999999 99999877621111 1011111 1 1 12234578999999999977
Q ss_pred CCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecC
Q 022947 124 VPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISN 164 (289)
Q Consensus 124 ~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~aiviv~tN 164 (289)
.+. ++. . ..-.+....+...++... ...++++.-
T Consensus 72 ~~~-~~~--~---~~~~k~~~~li~~l~~ag-v~RllVVGG 105 (211)
T COG2910 72 AGA-SDN--D---ELHSKSIEALIEALKGAG-VPRLLVVGG 105 (211)
T ss_pred CCC-CCh--h---HHHHHHHHHHHHHHhhcC-CeeEEEEcC
Confidence 553 221 1 112333555556665543 445666653
No 170
>PRK06182 short chain dehydrogenase; Validated
Probab=97.54 E-value=0.001 Score=60.11 Aligned_cols=114 Identities=14% Similarity=0.121 Sum_probs=65.0
Q ss_pred CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchhHHhhhhcccCCceEEEEecCCCHHhhh-------CCCCEE
Q 022947 46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDAL-------TGMDIV 118 (289)
Q Consensus 46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~eal-------~~aDiV 118 (289)
.++|.|+|++|.+|..++..|+..|. +|++.++++.. ..++...............+++++.+ .+.|++
T Consensus 3 ~k~vlItGasggiG~~la~~l~~~G~--~V~~~~r~~~~--l~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~~~~~id~l 78 (273)
T PRK06182 3 KKVALVTGASSGIGKATARRLAAQGY--TVYGAARRVDK--MEDLASLGVHPLSLDVTDEASIKAAVDTIIAEEGRIDVL 78 (273)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCC--EEEEEeCCHHH--HHHHHhCCCeEEEeeCCCHHHHHHHHHHHHHhcCCCCEE
Confidence 46899999999999999999999997 89999887521 11121111000000111112232333 378999
Q ss_pred EEcCCCCCCC---CC---chhhHHHhhHHH----HHHHHHHHHHhCCCcEEEEecC
Q 022947 119 IIPAGVPRKP---GM---TRDDLFNINAGI----VKTLCEGIAKCCPKAIVNLISN 164 (289)
Q Consensus 119 Iitag~~~~~---g~---~r~d~~~~N~~i----~~~i~~~i~~~~p~aiviv~tN 164 (289)
|+++|..... .. .....+..|... ++.+.+.+++... +.+++++.
T Consensus 79 i~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~l~~~~~~~~-g~iv~isS 133 (273)
T PRK06182 79 VNNAGYGSYGAIEDVPIDEARRQFEVNLFGAARLTQLVLPHMRAQRS-GRIINISS 133 (273)
T ss_pred EECCCcCCCCchhhCCHHHHHHHHhHHhHHHHHHHHHHHHHHHhcCC-CEEEEEcc
Confidence 9999864221 11 123345556543 5666666665543 45555553
No 171
>PRK08655 prephenate dehydrogenase; Provisional
Probab=97.54 E-value=0.00069 Score=66.33 Aligned_cols=66 Identities=24% Similarity=0.346 Sum_probs=47.0
Q ss_pred CEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchhHHhhhhcccCCceEEEEecCCCHHhhhCCCCEEEEcC
Q 022947 47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPA 122 (289)
Q Consensus 47 ~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~eal~~aDiVIita 122 (289)
|||+|||+.|.+|..++..|...|+ +|.++|+++... .++.... .+.. ++++.+++.++|+||++.
T Consensus 1 MkI~IIGG~G~mG~slA~~L~~~G~--~V~v~~r~~~~~--~~~a~~~---gv~~---~~~~~e~~~~aDvVIlav 66 (437)
T PRK08655 1 MKISIIGGTGGLGKWFARFLKEKGF--EVIVTGRDPKKG--KEVAKEL---GVEY---ANDNIDAAKDADIVIISV 66 (437)
T ss_pred CEEEEEecCCHHHHHHHHHHHHCCC--EEEEEECChHHH--HHHHHHc---CCee---ccCHHHHhccCCEEEEec
Confidence 5899998559999999999999887 899999875221 1111110 1111 245668899999999985
No 172
>PRK07326 short chain dehydrogenase; Provisional
Probab=97.53 E-value=0.0012 Score=57.87 Aligned_cols=115 Identities=17% Similarity=0.193 Sum_probs=64.6
Q ss_pred CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCc--hhHHhhhhcccCCceEEEEe----cCCCHHhhh-------
Q 022947 46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTNAVVRGFL----GQQQLEDAL------- 112 (289)
Q Consensus 46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~--~g~~~DL~~~~~~~~v~~~~----~t~d~~eal------- 112 (289)
.++|.|+||+|.+|+.++..|+..|. +|+++++++. .....++... ..+..+. ...++.+.+
T Consensus 6 ~~~ilItGatg~iG~~la~~l~~~g~--~V~~~~r~~~~~~~~~~~l~~~---~~~~~~~~D~~~~~~~~~~~~~~~~~~ 80 (237)
T PRK07326 6 GKVALITGGSKGIGFAIAEALLAEGY--KVAITARDQKELEEAAAELNNK---GNVLGLAADVRDEADVQRAVDAIVAAF 80 (237)
T ss_pred CCEEEEECCCCcHHHHHHHHHHHCCC--EEEEeeCCHHHHHHHHHHHhcc---CcEEEEEccCCCHHHHHHHHHHHHHHc
Confidence 35899999999999999999998887 8999998762 1112223221 1122111 111222222
Q ss_pred CCCCEEEEcCCCCCCC---CCch---hhHHHhhHHHHHHHHHHHHHh--CCCcEEEEecCC
Q 022947 113 TGMDIVIIPAGVPRKP---GMTR---DDLFNINAGIVKTLCEGIAKC--CPKAIVNLISNP 165 (289)
Q Consensus 113 ~~aDiVIitag~~~~~---g~~r---~d~~~~N~~i~~~i~~~i~~~--~p~aiviv~tNP 165 (289)
...|+||+++|..... ..+. .+.+..|+.....+.+.+.+. ...+.++++|..
T Consensus 81 ~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~iv~~ss~ 141 (237)
T PRK07326 81 GGLDVLIANAGVGHFAPVEELTPEEWRLVIDTNLTGAFYTIKAAVPALKRGGGYIINISSL 141 (237)
T ss_pred CCCCEEEECCCCCCCCchhhCCHHHHHHHHhhccHHHHHHHHHHHHHHHHCCeEEEEECCh
Confidence 3799999998864321 1111 133555655444444444332 234556666653
No 173
>PRK10538 malonic semialdehyde reductase; Provisional
Probab=97.53 E-value=0.0015 Score=58.14 Aligned_cols=34 Identities=18% Similarity=0.126 Sum_probs=31.3
Q ss_pred CEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCC
Q 022947 47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN 82 (289)
Q Consensus 47 ~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~ 82 (289)
|+|.|+||+|.+|..++..|+..|. +|+++|+++
T Consensus 1 ~~vlItGasg~iG~~la~~l~~~G~--~V~~~~r~~ 34 (248)
T PRK10538 1 MIVLVTGATAGFGECITRRFIQQGH--KVIATGRRQ 34 (248)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCC--EEEEEECCH
Confidence 5899999999999999999999997 899999875
No 174
>PRK11559 garR tartronate semialdehyde reductase; Provisional
Probab=97.52 E-value=0.00053 Score=63.20 Aligned_cols=65 Identities=18% Similarity=0.264 Sum_probs=47.4
Q ss_pred CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchhHHhhhhcccCCceEEEEecCCCHHhhhCCCCEEEEcC
Q 022947 46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPA 122 (289)
Q Consensus 46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~eal~~aDiVIita 122 (289)
++||+|||. |.+|..++..++..|+ +|.++|+++... ..+.... +. ..+++++.+++||+||++.
T Consensus 2 ~~~IgviG~-G~mG~~~a~~l~~~g~--~v~~~d~~~~~~--~~~~~~g----~~---~~~~~~e~~~~~d~vi~~v 66 (296)
T PRK11559 2 TMKVGFIGL-GIMGKPMSKNLLKAGY--SLVVYDRNPEAV--AEVIAAG----AE---TASTAKAVAEQCDVIITML 66 (296)
T ss_pred CceEEEEcc-CHHHHHHHHHHHHCCC--eEEEEcCCHHHH--HHHHHCC----Ce---ecCCHHHHHhcCCEEEEeC
Confidence 468999998 9999999999999887 899999876221 1111111 11 1245678889999999985
No 175
>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional
Probab=97.52 E-value=0.00075 Score=59.83 Aligned_cols=114 Identities=16% Similarity=0.222 Sum_probs=65.0
Q ss_pred CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCc--hhHHhhhhcccCCceEEEE----ecCCCHHhhh-------
Q 022947 46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTNAVVRGF----LGQQQLEDAL------- 112 (289)
Q Consensus 46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~--~g~~~DL~~~~~~~~v~~~----~~t~d~~eal------- 112 (289)
.++|.|+|++|.+|.+++..|+..|. +|++++++.. .....++... ..++..+ ....++.+++
T Consensus 4 ~~~vlItG~sg~iG~~la~~l~~~g~--~v~~~~r~~~~~~~~~~~~~~~--~~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 79 (258)
T PRK12429 4 GKVALVTGAASGIGLEIALALAKEGA--KVVIADLNDEAAAAAAEALQKA--GGKAIGVAMDVTDEEAINAGIDYAVETF 79 (258)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCC--eEEEEeCCHHHHHHHHHHHHhc--CCcEEEEEcCCCCHHHHHHHHHHHHHHc
Confidence 35899999999999999999999997 9999998762 2222233221 1122211 1111222222
Q ss_pred CCCCEEEEcCCCCCCCC---Cc---hhhHHHhhHHH----HHHHHHHHHHhCCCcEEEEecC
Q 022947 113 TGMDIVIIPAGVPRKPG---MT---RDDLFNINAGI----VKTLCEGIAKCCPKAIVNLISN 164 (289)
Q Consensus 113 ~~aDiVIitag~~~~~g---~~---r~d~~~~N~~i----~~~i~~~i~~~~p~aiviv~tN 164 (289)
.+.|+||+++|...... .+ -.+.+..|+.. .+.+.+.+++... ..++++|.
T Consensus 80 ~~~d~vi~~a~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~-~~iv~iss 140 (258)
T PRK12429 80 GGVDILVNNAGIQHVAPIEDFPTEKWKKMIAIMLDGAFLTTKAALPIMKAQGG-GRIINMAS 140 (258)
T ss_pred CCCCEEEECCCCCCCCChhhCCHHHHHHHHhhcchhhHHHHHHHHHHHHhcCC-eEEEEEcc
Confidence 36899999998642211 11 12234445554 5666666655443 34554444
No 176
>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating). This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.
Probab=97.51 E-value=0.00076 Score=62.54 Aligned_cols=95 Identities=18% Similarity=0.201 Sum_probs=61.2
Q ss_pred CEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchhHHhhhhcccCCceEEEEecCCCHHhhhCCCCEEEEcCCCCC
Q 022947 47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVPR 126 (289)
Q Consensus 47 ~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~eal~~aDiVIitag~~~ 126 (289)
|||+|||. |.+|+.++..|...|+ +|.++|+++.. ..++..... .......++.+.++++|+||++..
T Consensus 1 M~Ig~IGl-G~mG~~la~~L~~~g~--~V~~~dr~~~~--~~~l~~~g~----~~~~s~~~~~~~~~~~dvIi~~vp--- 68 (298)
T TIGR00872 1 MQLGLIGL-GRMGANIVRRLAKRGH--DCVGYDHDQDA--VKAMKEDRT----TGVANLRELSQRLSAPRVVWVMVP--- 68 (298)
T ss_pred CEEEEEcc-hHHHHHHHHHHHHCCC--EEEEEECCHHH--HHHHHHcCC----cccCCHHHHHhhcCCCCEEEEEcC---
Confidence 58999998 9999999999999997 99999987622 122222110 001111233345678999999842
Q ss_pred CCCCchhhHHHhhHHHHHHHHHHHHHhC-CCcEEEEecCCC
Q 022947 127 KPGMTRDDLFNINAGIVKTLCEGIAKCC-PKAIVNLISNPV 166 (289)
Q Consensus 127 ~~g~~r~d~~~~N~~i~~~i~~~i~~~~-p~aiviv~tNPv 166 (289)
+- .++++++.+.... |+.+++..||..
T Consensus 69 ------------~~-~~~~v~~~l~~~l~~g~ivid~st~~ 96 (298)
T TIGR00872 69 ------------HG-IVDAVLEELAPTLEKGDIVIDGGNSY 96 (298)
T ss_pred ------------ch-HHHHHHHHHHhhCCCCCEEEECCCCC
Confidence 11 3555556666554 667787777664
No 177
>PRK07102 short chain dehydrogenase; Provisional
Probab=97.51 E-value=0.0043 Score=54.80 Aligned_cols=117 Identities=18% Similarity=0.064 Sum_probs=67.5
Q ss_pred CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCc--hhHHhhhhcccCCceEEEEe----cCCCHHhhh----CCC
Q 022947 46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTNAVVRGFL----GQQQLEDAL----TGM 115 (289)
Q Consensus 46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~--~g~~~DL~~~~~~~~v~~~~----~t~d~~eal----~~a 115 (289)
+++|.|+||+|.+|..++..|+..|. +|+++|+++. .....++.... ..++..+. ...++++.+ +..
T Consensus 1 ~~~vlItGas~giG~~~a~~l~~~G~--~Vi~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 77 (243)
T PRK07102 1 MKKILIIGATSDIARACARRYAAAGA--RLYLAARDVERLERLADDLRARG-AVAVSTHELDILDTASHAAFLDSLPALP 77 (243)
T ss_pred CcEEEEEcCCcHHHHHHHHHHHhcCC--EEEEEeCCHHHHHHHHHHHHHhc-CCeEEEEecCCCChHHHHHHHHHHhhcC
Confidence 35899999999999999999999997 8999998762 22222332211 11222211 111222222 345
Q ss_pred CEEEEcCCCCCCC---CCchh---hHHHhhHHHHHHHHHHHHHh---CCCcEEEEecCC
Q 022947 116 DIVIIPAGVPRKP---GMTRD---DLFNINAGIVKTLCEGIAKC---CPKAIVNLISNP 165 (289)
Q Consensus 116 DiVIitag~~~~~---g~~r~---d~~~~N~~i~~~i~~~i~~~---~p~aiviv~tNP 165 (289)
|++|+++|..... ..+.. +.+..|+.....+.+.+..+ ...+.++++|-.
T Consensus 78 d~vv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~sS~ 136 (243)
T PRK07102 78 DIVLIAVGTLGDQAACEADPALALREFRTNFEGPIALLTLLANRFEARGSGTIVGISSV 136 (243)
T ss_pred CEEEECCcCCCCcccccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhCCCCEEEEEecc
Confidence 9999998853211 22222 34566776666666555543 234566666543
No 178
>PRK06924 short chain dehydrogenase; Provisional
Probab=97.50 E-value=0.001 Score=58.98 Aligned_cols=34 Identities=15% Similarity=0.158 Sum_probs=30.9
Q ss_pred CEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCC
Q 022947 47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN 82 (289)
Q Consensus 47 ~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~ 82 (289)
++|.|+|++|.+|+.++..|+++|. +|+++++++
T Consensus 2 k~vlItGasggiG~~ia~~l~~~g~--~V~~~~r~~ 35 (251)
T PRK06924 2 RYVIITGTSQGLGEAIANQLLEKGT--HVISISRTE 35 (251)
T ss_pred cEEEEecCCchHHHHHHHHHHhcCC--EEEEEeCCc
Confidence 4799999999999999999999997 899999865
No 179
>PRK07069 short chain dehydrogenase; Validated
Probab=97.50 E-value=0.0045 Score=54.66 Aligned_cols=114 Identities=24% Similarity=0.305 Sum_probs=65.8
Q ss_pred EEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCC-Cc--hhHHhhhhcccCCceE---E-EEecCCCHH-------hhhC
Q 022947 48 KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVV-NT--PGVTADISHMDTNAVV---R-GFLGQQQLE-------DALT 113 (289)
Q Consensus 48 KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~-~~--~g~~~DL~~~~~~~~v---~-~~~~t~d~~-------eal~ 113 (289)
||.|+|++|.+|.+++..|+..|. +|++++++ .. .....++........+ . .....+++. +.+.
T Consensus 1 ~ilVtG~~~~iG~~~a~~l~~~G~--~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 78 (251)
T PRK07069 1 RAFITGAAGGLGRAIARRMAEQGA--KVFLTDINDAAGLDAFAAEINAAHGEGVAFAAVQDVTDEAQWQALLAQAADAMG 78 (251)
T ss_pred CEEEECCCChHHHHHHHHHHHCCC--EEEEEeCCcchHHHHHHHHHHhcCCCceEEEEEeecCCHHHHHHHHHHHHHHcC
Confidence 488999999999999999999997 89999987 31 1122222221100111 1 111111121 2235
Q ss_pred CCCEEEEcCCCCCCC---CCc---hhhHHHhhHH----HHHHHHHHHHHhCCCcEEEEecC
Q 022947 114 GMDIVIIPAGVPRKP---GMT---RDDLFNINAG----IVKTLCEGIAKCCPKAIVNLISN 164 (289)
Q Consensus 114 ~aDiVIitag~~~~~---g~~---r~d~~~~N~~----i~~~i~~~i~~~~p~aiviv~tN 164 (289)
..|+||.++|..... ..+ -...+..|+. ..+.+.+.+++... +.++++|.
T Consensus 79 ~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~-~~ii~~ss 138 (251)
T PRK07069 79 GLSVLVNNAGVGSFGAIEQIELDEWRRVMAINVESIFLGCKHALPYLRASQP-ASIVNISS 138 (251)
T ss_pred CccEEEECCCcCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHhhcCC-cEEEEecC
Confidence 689999999865321 111 1234556666 66777777776543 45555554
No 180
>PRK06545 prephenate dehydrogenase; Validated
Probab=97.50 E-value=0.00078 Score=64.15 Aligned_cols=68 Identities=19% Similarity=0.244 Sum_probs=46.3
Q ss_pred CEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchhHHhhhhcccCCceEEEEecCCCHHhhhCCCCEEEEcC
Q 022947 47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPA 122 (289)
Q Consensus 47 ~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~eal~~aDiVIita 122 (289)
+||+|||. |.+|.+++..|...|+ ++.++|.+........-.... .... .++++++++++||+||++.
T Consensus 1 ~~I~iIG~-GliG~siA~~L~~~G~--~v~i~~~~~~~~~~~~a~~~~---~~~~--~~~~~~~~~~~aDlVilav 68 (359)
T PRK06545 1 RTVLIVGL-GLIGGSLALAIKAAGP--DVFIIGYDPSAAQLARALGFG---VIDE--LAADLQRAAAEADLIVLAV 68 (359)
T ss_pred CeEEEEEe-CHHHHHHHHHHHhcCC--CeEEEEeCCCHHHHHHHhcCC---CCcc--cccCHHHHhcCCCEEEEeC
Confidence 37999998 9999999999999997 778888876321111100110 0000 1245678899999999985
No 181
>PRK07806 short chain dehydrogenase; Provisional
Probab=97.50 E-value=0.00092 Score=59.15 Aligned_cols=115 Identities=17% Similarity=0.205 Sum_probs=66.9
Q ss_pred CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCc---hhHHhhhhcccCCceEEEEe-cCCC---HHhhh------
Q 022947 46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT---PGVTADISHMDTNAVVRGFL-GQQQ---LEDAL------ 112 (289)
Q Consensus 46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~---~g~~~DL~~~~~~~~v~~~~-~t~d---~~eal------ 112 (289)
.+++.|+||+|++|.+++..|+..|. +|++++++.. .....++.... .++..+. +-++ ....+
T Consensus 6 ~k~vlItGasggiG~~l~~~l~~~G~--~V~~~~r~~~~~~~~~~~~l~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~ 81 (248)
T PRK07806 6 GKTALVTGSSRGIGADTAKILAGAGA--HVVVNYRQKAPRANKVVAEIEAAG--GRASAVGADLTDEESVAALMDTAREE 81 (248)
T ss_pred CcEEEEECCCCcHHHHHHHHHHHCCC--EEEEEeCCchHhHHHHHHHHHhcC--CceEEEEcCCCCHHHHHHHHHHHHHh
Confidence 35899999999999999999999997 8888887641 11112222211 1121111 1112 22222
Q ss_pred -CCCCEEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhC-CCcEEEEecC
Q 022947 113 -TGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCC-PKAIVNLISN 164 (289)
Q Consensus 113 -~~aDiVIitag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~-p~aiviv~tN 164 (289)
.+.|+||+++|.......+..+.+..|......+++.+.++. ..+.++++|.
T Consensus 82 ~~~~d~vi~~ag~~~~~~~~~~~~~~vn~~~~~~l~~~~~~~~~~~~~iv~isS 135 (248)
T PRK07806 82 FGGLDALVLNASGGMESGMDEDYAMRLNRDAQRNLARAALPLMPAGSRVVFVTS 135 (248)
T ss_pred CCCCcEEEECCCCCCCCCCCcceeeEeeeHHHHHHHHHHHhhccCCceEEEEeC
Confidence 368999999875422111223345567777777777777654 3455555543
No 182
>PRK07067 sorbitol dehydrogenase; Provisional
Probab=97.48 E-value=0.002 Score=57.44 Aligned_cols=114 Identities=19% Similarity=0.237 Sum_probs=65.8
Q ss_pred CEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCch--hHHhhhhcccCCceEE-EEecCCCHHhh-------hCCCC
Q 022947 47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP--GVTADISHMDTNAVVR-GFLGQQQLEDA-------LTGMD 116 (289)
Q Consensus 47 ~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~--g~~~DL~~~~~~~~v~-~~~~t~d~~ea-------l~~aD 116 (289)
+++.|+|++|.+|..++..|+..|. +|+++|++... ....++.... ..+. ......+.+++ +...|
T Consensus 7 ~~vlItGas~~iG~~ia~~l~~~G~--~v~~~~r~~~~~~~~~~~~~~~~--~~~~~D~~~~~~~~~~~~~~~~~~~~id 82 (257)
T PRK07067 7 KVALLTGAASGIGEAVAERYLAEGA--RVVIADIKPARARLAALEIGPAA--IAVSLDVTRQDSIDRIVAAAVERFGGID 82 (257)
T ss_pred CEEEEeCCCchHHHHHHHHHHHcCC--EEEEEcCCHHHHHHHHHHhCCce--EEEEccCCCHHHHHHHHHHHHHHcCCCC
Confidence 4799999999999999999999998 89999987621 1111221100 0011 01111122222 24689
Q ss_pred EEEEcCCCCCC-C--CC---chhhHHHhhHHHHHHHHHHHHHh----CCCcEEEEecC
Q 022947 117 IVIIPAGVPRK-P--GM---TRDDLFNINAGIVKTLCEGIAKC----CPKAIVNLISN 164 (289)
Q Consensus 117 iVIitag~~~~-~--g~---~r~d~~~~N~~i~~~i~~~i~~~----~p~aiviv~tN 164 (289)
++|+++|.... + .. .-.+.+..|+.....+.+.+.++ .+.+.++++|.
T Consensus 83 ~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~iv~~sS 140 (257)
T PRK07067 83 ILFNNAALFDMAPILDISRDSYDRLFAVNVKGLFFLMQAVARHMVEQGRGGKIINMAS 140 (257)
T ss_pred EEEECCCcCCCCCcccCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhcCCCcEEEEeCC
Confidence 99999986421 1 11 12234666766665555555432 33456666655
No 183
>PRK06928 pyrroline-5-carboxylate reductase; Reviewed
Probab=97.48 E-value=0.0018 Score=59.42 Aligned_cols=100 Identities=17% Similarity=0.117 Sum_probs=63.4
Q ss_pred CCEEEEEcCCCccHHHHHHHHHhCCC--ccEEEEEeCCCchhHHhhhhcccCCceEEEEecCCCHHhhhCCCCEEEEcCC
Q 022947 46 GFKVAVLGAAGGIGQPLAMLMKINPL--VSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAG 123 (289)
Q Consensus 46 ~~KI~IIGaaG~VGs~la~~L~~~g~--~~eI~LvD~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~eal~~aDiVIitag 123 (289)
|+||+|||+ |.+|..++..|...+. ..+|+++|.+... ....+... ...+.. +.+..+.++++|+||++..
T Consensus 1 m~~I~iIG~-G~mG~ala~~L~~~g~~~~~~V~~~~r~~~~-~~~~l~~~--~~~~~~---~~~~~e~~~~aDvVilavp 73 (277)
T PRK06928 1 MEKIGFIGY-GSMADMIATKLLETEVATPEEIILYSSSKNE-HFNQLYDK--YPTVEL---ADNEAEIFTKCDHSFICVP 73 (277)
T ss_pred CCEEEEECc-cHHHHHHHHHHHHCCCCCcccEEEEeCCcHH-HHHHHHHH--cCCeEE---eCCHHHHHhhCCEEEEecC
Confidence 468999998 9999999999888772 2488999886421 11112211 111221 2355677899999999852
Q ss_pred CCCCCCCchhhHHHhhHHHHHHHHHHHHHhC-CCcEEEEecCCCcc
Q 022947 124 VPRKPGMTRDDLFNINAGIVKTLCEGIAKCC-PKAIVNLISNPVNS 168 (289)
Q Consensus 124 ~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~-p~aiviv~tNPvd~ 168 (289)
...++++++.+..+- ++..|+.+.|-++.
T Consensus 74 ----------------p~~~~~vl~~l~~~l~~~~~ivS~~aGi~~ 103 (277)
T PRK06928 74 ----------------PLAVLPLLKDCAPVLTPDRHVVSIAAGVSL 103 (277)
T ss_pred ----------------HHHHHHHHHHHHhhcCCCCEEEEECCCCCH
Confidence 123556666666544 45667767776654
No 184
>PRK06172 short chain dehydrogenase; Provisional
Probab=97.47 E-value=0.0023 Score=56.90 Aligned_cols=114 Identities=15% Similarity=0.090 Sum_probs=64.1
Q ss_pred CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCc--hhHHhhhhcccCCceEEEEe-cCC---CHHhhh-------
Q 022947 46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTNAVVRGFL-GQQ---QLEDAL------- 112 (289)
Q Consensus 46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~--~g~~~DL~~~~~~~~v~~~~-~t~---d~~eal------- 112 (289)
.++|.|+||+|.+|..++..|+..|. +|+++++++. .....++.... .++..+. +-+ ++.+.+
T Consensus 7 ~k~ilItGas~~iG~~ia~~l~~~G~--~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~i~~~~~~~~~~~ 82 (253)
T PRK06172 7 GKVALVTGGAAGIGRATALAFAREGA--KVVVADRDAAGGEETVALIREAG--GEALFVACDVTRDAEVKALVEQTIAAY 82 (253)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHcCC--EEEEEeCCHHHHHHHHHHHHhcC--CceEEEEcCCCCHHHHHHHHHHHHHHh
Confidence 35899999999999999999999887 8999998762 22222332221 1222211 111 222223
Q ss_pred CCCCEEEEcCCCCCCC----CCch---hhHHHhhHHHHHHHH----HHHHHhCCCcEEEEecC
Q 022947 113 TGMDIVIIPAGVPRKP----GMTR---DDLFNINAGIVKTLC----EGIAKCCPKAIVNLISN 164 (289)
Q Consensus 113 ~~aDiVIitag~~~~~----g~~r---~d~~~~N~~i~~~i~----~~i~~~~p~aiviv~tN 164 (289)
...|+||.++|..... ..+. .+.+..|+.....+. +.+.+. ..+.++++|.
T Consensus 83 g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~-~~~~ii~~sS 144 (253)
T PRK06172 83 GRLDYAFNNAGIEIEQGRLAEGSEAEFDAIMGVNVKGVWLCMKYQIPLMLAQ-GGGAIVNTAS 144 (253)
T ss_pred CCCCEEEECCCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhc-CCcEEEEECc
Confidence 2459999999864221 1222 234556665554333 344333 2345555554
No 185
>PRK07634 pyrroline-5-carboxylate reductase; Reviewed
Probab=97.47 E-value=0.0013 Score=58.76 Aligned_cols=100 Identities=9% Similarity=0.157 Sum_probs=59.3
Q ss_pred CCCEEEEEcCCCccHHHHHHHHHhCCC--ccEEEEEeCCCchhHHhhhhcccCCceEEEEecCCCHHhhhCCCCEEEEcC
Q 022947 45 PGFKVAVLGAAGGIGQPLAMLMKINPL--VSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPA 122 (289)
Q Consensus 45 ~~~KI~IIGaaG~VGs~la~~L~~~g~--~~eI~LvD~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~eal~~aDiVIita 122 (289)
+.+||+|||+ |.+|..++..++..+. ..+++.++.+.. ....++.+.. .+.. +.++++.++++|+||++.
T Consensus 3 ~~~kI~iIG~-G~mg~ala~~l~~~~~~~~~~i~~~~~~~~-~~~~~~~~~~---~~~~---~~~~~~~~~~~DiViiav 74 (245)
T PRK07634 3 KKHRILFIGA-GRMAEAIFSGLLKTSKEYIEEIIVSNRSNV-EKLDQLQARY---NVST---TTDWKQHVTSVDTIVLAM 74 (245)
T ss_pred CCCeEEEECc-CHHHHHHHHHHHhCCCCCcCeEEEECCCCH-HHHHHHHHHc---CcEE---eCChHHHHhcCCEEEEec
Confidence 3579999998 9999999998887652 334777776421 1122222211 1222 235678889999999984
Q ss_pred CCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecCCCcc
Q 022947 123 GVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNS 168 (289)
Q Consensus 123 g~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~aiviv~tNPvd~ 168 (289)
. -...+++++.+..+-++.+|+.++.-++.
T Consensus 75 p----------------~~~~~~v~~~l~~~~~~~~vis~~~gi~~ 104 (245)
T PRK07634 75 P----------------PSAHEELLAELSPLLSNQLVVTVAAGIGP 104 (245)
T ss_pred C----------------HHHHHHHHHHHHhhccCCEEEEECCCCCH
Confidence 2 11234455555544344466655555543
No 186
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=97.47 E-value=0.00045 Score=56.98 Aligned_cols=118 Identities=18% Similarity=0.215 Sum_probs=72.3
Q ss_pred EEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchhHHh-----hhhcccCCceEEEEecCCCHHhhhCCCCEEEEcCC
Q 022947 49 VAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTA-----DISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAG 123 (289)
Q Consensus 49 I~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g~~~-----DL~~~~~~~~v~~~~~t~d~~eal~~aDiVIitag 123 (289)
|+|+|+ |.+|..+|..|.+.+. +|.+++..+ ..... .+........+.......+..+....+|+||+|.-
T Consensus 1 I~I~G~-GaiG~~~a~~L~~~g~--~V~l~~r~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~viv~vK 76 (151)
T PF02558_consen 1 ILIIGA-GAIGSLYAARLAQAGH--DVTLVSRSP-RLEAIKEQGLTITGPDGDETVQPPIVISAPSADAGPYDLVIVAVK 76 (151)
T ss_dssp EEEEST-SHHHHHHHHHHHHTTC--EEEEEESHH-HHHHHHHHCEEEEETTEEEEEEEEEEESSHGHHHSTESEEEE-SS
T ss_pred CEEECc-CHHHHHHHHHHHHCCC--ceEEEEccc-cHHhhhheeEEEEecccceecccccccCcchhccCCCcEEEEEec
Confidence 789999 9999999999999888 999999865 11111 11111101111111111122246799999999952
Q ss_pred CCCCCCCchhhHHHhhHHHHHHHHHHHHHhC-CCcEEEEecCCCcccHHHHHHHHHHhCCCCCCcEEE-eee
Q 022947 124 VPRKPGMTRDDLFNINAGIVKTLCEGIAKCC-PKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLG-VTM 193 (289)
Q Consensus 124 ~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~-p~aiviv~tNPvd~~t~~~~~~~~~~~~~~~~kviG-~t~ 193 (289)
.. -..+.++.++.+. |++.|+.+-|=++..- .+.+. +|+.+|++ ++.
T Consensus 77 a~----------------~~~~~l~~l~~~~~~~t~iv~~qNG~g~~~-----~l~~~--~~~~~v~~g~~~ 125 (151)
T PF02558_consen 77 AY----------------QLEQALQSLKPYLDPNTTIVSLQNGMGNEE-----VLAEY--FPRPRVLGGVTT 125 (151)
T ss_dssp GG----------------GHHHHHHHHCTGEETTEEEEEESSSSSHHH-----HHHCH--STGSGEEEEEEE
T ss_pred cc----------------chHHHHHHHhhccCCCcEEEEEeCCCCcHH-----HHHHH--cCCCcEEEEEEe
Confidence 11 1344666677776 7778888889887653 33433 56778875 444
No 187
>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase. This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.
Probab=97.46 E-value=0.00058 Score=62.88 Aligned_cols=63 Identities=14% Similarity=0.261 Sum_probs=46.2
Q ss_pred EEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchhHHhhhhcccCCceEEEEecCCCHHhhhCCCCEEEEcC
Q 022947 48 KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPA 122 (289)
Q Consensus 48 KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~eal~~aDiVIita 122 (289)
||+|||. |.+|+.++..|+..|+ +|.++|+++.. ...+..... . ..++..+++++||+||++.
T Consensus 1 ~IgvIG~-G~mG~~iA~~l~~~G~--~V~~~dr~~~~--~~~~~~~g~----~---~~~~~~~~~~~aDivi~~v 63 (291)
T TIGR01505 1 KVGFIGL-GIMGSPMSINLAKAGY--QLHVTTIGPEV--ADELLAAGA----V---TAETARQVTEQADVIFTMV 63 (291)
T ss_pred CEEEEEe-cHHHHHHHHHHHHCCC--eEEEEcCCHHH--HHHHHHCCC----c---ccCCHHHHHhcCCEEEEec
Confidence 5999998 9999999999999998 99999987521 122222211 1 1235668899999999985
No 188
>KOG2666 consensus UDP-glucose/GDP-mannose dehydrogenase [Carbohydrate transport and metabolism; Signal transduction mechanisms]
Probab=97.46 E-value=0.00099 Score=61.97 Aligned_cols=106 Identities=17% Similarity=0.257 Sum_probs=64.4
Q ss_pred CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCch--hH-----------HhhhhcccCCceEEEEecCCCHHhhh
Q 022947 46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP--GV-----------TADISHMDTNAVVRGFLGQQQLEDAL 112 (289)
Q Consensus 46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~--g~-----------~~DL~~~~~~~~v~~~~~t~d~~eal 112 (289)
++||+-||| |+||......++..=.-.+|.++|++..+ .. .-|........++- + ++|.+.++
T Consensus 1 ~~kicciga-gyvggptcavia~kcp~i~vtvvd~s~~ri~~wnsd~lpiyepgldevv~~crgknlf-f--stdiekai 76 (481)
T KOG2666|consen 1 MVKICCIGA-GYVGGPTCAVIALKCPDIEVTVVDISVPRINAWNSDKLPIYEPGLDEVVKQCRGKNLF-F--STDIEKAI 76 (481)
T ss_pred CceEEEecC-cccCCcchheeeecCCceEEEEEecCchHhhcccCCCCcccCCCHHHHHHHhcCCcee-e--ecchHHHh
Confidence 469999999 99998776544443222399999998621 00 01111111122333 2 46889999
Q ss_pred CCCCEEEEcCCCCCCC-C--CchhhHHHhhHHHHHHHHHHHHHhCCCcEE
Q 022947 113 TGMDIVIIPAGVPRKP-G--MTRDDLFNINAGIVKTLCEGIAKCCPKAIV 159 (289)
Q Consensus 113 ~~aDiVIitag~~~~~-g--~~r~d~~~~N~~i~~~i~~~i~~~~p~aiv 159 (289)
+.||+||+....|.|. | .-| ...++.+...++.|.+++...++
T Consensus 77 ~eadlvfisvntptkt~g~gkg~----aadlky~es~ar~ia~~s~~~ki 122 (481)
T KOG2666|consen 77 KEADLVFISVNTPTKTYGLGKGK----AADLKYWESAARMIADVSVSDKI 122 (481)
T ss_pred hhcceEEEEecCCcccccCCCCc----ccchhHHHHHHHHHHHhccCCeE
Confidence 9999999999888764 2 222 12455566666666666533333
No 189
>PRK08265 short chain dehydrogenase; Provisional
Probab=97.46 E-value=0.0024 Score=57.31 Aligned_cols=112 Identities=17% Similarity=0.138 Sum_probs=63.7
Q ss_pred CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCch--hHHhhhhcccCCceEEEE----ecCCCHHhh-------h
Q 022947 46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP--GVTADISHMDTNAVVRGF----LGQQQLEDA-------L 112 (289)
Q Consensus 46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~--g~~~DL~~~~~~~~v~~~----~~t~d~~ea-------l 112 (289)
.+++.|+|++|.+|..++..|+..|. +|++.|++... ....++. .++..+ ....++++. +
T Consensus 6 ~k~vlItGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~-----~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 78 (261)
T PRK08265 6 GKVAIVTGGATLIGAAVARALVAAGA--RVAIVDIDADNGAAVAASLG-----ERARFIATDITDDAAIERAVATVVARF 78 (261)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHhC-----CeeEEEEecCCCHHHHHHHHHHHHHHh
Confidence 45899999999999999999999998 99999987621 1111111 111111 111112222 3
Q ss_pred CCCCEEEEcCCCCCCC--CCch---hhHHHhhHHHHHHHHHHHHHh--CCCcEEEEecC
Q 022947 113 TGMDIVIIPAGVPRKP--GMTR---DDLFNINAGIVKTLCEGIAKC--CPKAIVNLISN 164 (289)
Q Consensus 113 ~~aDiVIitag~~~~~--g~~r---~d~~~~N~~i~~~i~~~i~~~--~p~aiviv~tN 164 (289)
...|++|.++|..... ..+. .+.+..|+.....+.+.+..+ .+.+.+++++.
T Consensus 79 g~id~lv~~ag~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~g~ii~isS 137 (261)
T PRK08265 79 GRVDILVNLACTYLDDGLASSRADWLAALDVNLVSAAMLAQAAHPHLARGGGAIVNFTS 137 (261)
T ss_pred CCCCEEEECCCCCCCCcCcCCHHHHHHHHhHhhHHHHHHHHHHHHHHhcCCcEEEEECc
Confidence 4679999999864322 1222 233455655444444433322 34566666654
No 190
>PRK07679 pyrroline-5-carboxylate reductase; Reviewed
Probab=97.45 E-value=0.0012 Score=60.50 Aligned_cols=100 Identities=14% Similarity=0.164 Sum_probs=61.5
Q ss_pred CCCEEEEEcCCCccHHHHHHHHHhCCC--ccEEEEEeCCCchhHHhhhhcccCCceEEEEecCCCHHhhhCCCCEEEEcC
Q 022947 45 PGFKVAVLGAAGGIGQPLAMLMKINPL--VSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPA 122 (289)
Q Consensus 45 ~~~KI~IIGaaG~VGs~la~~L~~~g~--~~eI~LvD~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~eal~~aDiVIita 122 (289)
+.|||++||+ |.+|.+++..|+..+. ..+|+++|++.. ....++.... .+.. +.+..+.+++||+||++.
T Consensus 2 ~~mkI~~IG~-G~mG~aia~~l~~~g~~~~~~v~v~~r~~~-~~~~~l~~~~---g~~~---~~~~~e~~~~aDvVilav 73 (279)
T PRK07679 2 SIQNISFLGA-GSIAEAIIGGLLHANVVKGEQITVSNRSNE-TRLQELHQKY---GVKG---THNKKELLTDANILFLAM 73 (279)
T ss_pred CCCEEEEECc-cHHHHHHHHHHHHCCCCCcceEEEECCCCH-HHHHHHHHhc---CceE---eCCHHHHHhcCCEEEEEe
Confidence 4579999998 9999999999988761 247888887541 1122222211 1222 234567789999999985
Q ss_pred CCCCCCCCchhhHHHhhHHHHHHHHHHHHHh-CCCcEEEEecCCCcc
Q 022947 123 GVPRKPGMTRDDLFNINAGIVKTLCEGIAKC-CPKAIVNLISNPVNS 168 (289)
Q Consensus 123 g~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~-~p~aiviv~tNPvd~ 168 (289)
- + ..+.++++.+..+ .++.+|+.+.+-++.
T Consensus 74 ~----p------------~~~~~vl~~l~~~~~~~~liIs~~aGi~~ 104 (279)
T PRK07679 74 K----P------------KDVAEALIPFKEYIHNNQLIISLLAGVST 104 (279)
T ss_pred C----H------------HHHHHHHHHHHhhcCCCCEEEEECCCCCH
Confidence 2 1 1123333455544 356677666566543
No 191
>TIGR01746 Thioester-redct thioester reductase domain. It has been suggested that a NADP-binding motif can be found in the N-terminal portion of this domain that may form a Rossman-type fold.
Probab=97.45 E-value=0.0011 Score=61.64 Aligned_cols=111 Identities=13% Similarity=0.051 Sum_probs=69.4
Q ss_pred EEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchhHHh-hhh---------cccCC-ceEEEEecC----------C
Q 022947 48 KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTA-DIS---------HMDTN-AVVRGFLGQ----------Q 106 (289)
Q Consensus 48 KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g~~~-DL~---------~~~~~-~~v~~~~~t----------~ 106 (289)
+|.|+||+|++|++++..|+..|...+|+++.++....... .+. +.... .++..+.+. .
T Consensus 1 ~vlvtGatG~lG~~l~~~L~~~g~~~~V~~l~R~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~gl~~~ 80 (367)
T TIGR01746 1 TVLLTGATGFLGAYLLEELLRRSTQAKVICLVRAASEEHAMERLREALRSYRLWQEDLARERIEVVAGDLSEPRLGLSDA 80 (367)
T ss_pred CEEEeccchHHHHHHHHHHHhCCCCCEEEEEEccCCHHHHHHHHHHHHHHhCCCCchhhhCCEEEEeCCcCcccCCcCHH
Confidence 58899999999999999999888544799988765211110 110 00000 233332211 1
Q ss_pred CHHhhhCCCCEEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEE
Q 022947 107 QLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIV 159 (289)
Q Consensus 107 d~~eal~~aDiVIitag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~aiv 159 (289)
++.+...++|+||++|+.... .....++...|+.....+++...+.....++
T Consensus 81 ~~~~~~~~~d~vih~a~~~~~-~~~~~~~~~~nv~g~~~ll~~a~~~~~~~~v 132 (367)
T TIGR01746 81 EWERLAENVDTIVHNGALVNW-VYPYSELRAANVLGTREVLRLAASGRAKPLH 132 (367)
T ss_pred HHHHHHhhCCEEEeCCcEecc-CCcHHHHhhhhhHHHHHHHHHHhhCCCceEE
Confidence 244556899999999885432 2233456678888888888888776554433
No 192
>PF04321 RmlD_sub_bind: RmlD substrate binding domain; InterPro: IPR005913 dTDP-4-dehydrorhamnose reductase (1.1.1.133 from EC) catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS molecules such as core antigen and O-antigen. dTDP-6-deoxy-L-mannose + NADP+ = dTDP-4-dehydro-6-deoxy-L-mannose + NADPH ; GO: 0008831 dTDP-4-dehydrorhamnose reductase activity, 0045226 extracellular polysaccharide biosynthetic process; PDB: 2YDX_D 2YDY_A 3SC6_C 1VL0_B 2GGS_A 1KBZ_A 1KC3_A 1KC1_A 1N2S_A.
Probab=97.45 E-value=0.00015 Score=66.73 Aligned_cols=96 Identities=22% Similarity=0.247 Sum_probs=59.3
Q ss_pred CEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchhHHhhhhcccCCceEEEEecCCCHHhhh--CCCCEEEEcCCC
Q 022947 47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDAL--TGMDIVIIPAGV 124 (289)
Q Consensus 47 ~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~eal--~~aDiVIitag~ 124 (289)
|||.|+|++|++|+.+...|...++ +++.++..+ .|+.+.. .+.+.+ .+.|+||+||+.
T Consensus 1 MriLI~GasG~lG~~l~~~l~~~~~--~v~~~~r~~-----~dl~d~~------------~~~~~~~~~~pd~Vin~aa~ 61 (286)
T PF04321_consen 1 MRILITGASGFLGSALARALKERGY--EVIATSRSD-----LDLTDPE------------AVAKLLEAFKPDVVINCAAY 61 (286)
T ss_dssp EEEEEETTTSHHHHHHHHHHTTTSE--EEEEESTTC-----S-TTSHH------------HHHHHHHHH--SEEEE----
T ss_pred CEEEEECCCCHHHHHHHHHHhhCCC--EEEEeCchh-----cCCCCHH------------HHHHHHHHhCCCeEecccee
Confidence 7999999999999999999988887 888886542 3333321 111222 258999999986
Q ss_pred CCCC--CCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEec
Q 022947 125 PRKP--GMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLIS 163 (289)
Q Consensus 125 ~~~~--g~~r~d~~~~N~~i~~~i~~~i~~~~p~aiviv~t 163 (289)
.... ..+.......|+.....+++...+.+ +.+|.+|
T Consensus 62 ~~~~~ce~~p~~a~~iN~~~~~~la~~~~~~~--~~li~~S 100 (286)
T PF04321_consen 62 TNVDACEKNPEEAYAINVDATKNLAEACKERG--ARLIHIS 100 (286)
T ss_dssp --HHHHHHSHHHHHHHHTHHHHHHHHHHHHCT---EEEEEE
T ss_pred ecHHhhhhChhhhHHHhhHHHHHHHHHHHHcC--CcEEEee
Confidence 4211 12344566789999999999888763 4554443
No 193
>PRK12936 3-ketoacyl-(acyl-carrier-protein) reductase NodG; Reviewed
Probab=97.45 E-value=0.0021 Score=56.42 Aligned_cols=114 Identities=23% Similarity=0.331 Sum_probs=64.2
Q ss_pred CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCc--hhHHhhhhcccCCceEEEEe-cCCC---HHh-------hh
Q 022947 46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTNAVVRGFL-GQQQ---LED-------AL 112 (289)
Q Consensus 46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~--~g~~~DL~~~~~~~~v~~~~-~t~d---~~e-------al 112 (289)
.+++.|+||+|.+|..++..|+.+|. .|++.+.+.. .....++. .++..+. +-.+ +++ .+
T Consensus 6 ~~~vlItGa~g~iG~~la~~l~~~g~--~v~~~~~~~~~~~~~~~~~~-----~~~~~~~~D~~~~~~~~~~~~~~~~~~ 78 (245)
T PRK12936 6 GRKALVTGASGGIGEEIARLLHAQGA--IVGLHGTRVEKLEALAAELG-----ERVKIFPANLSDRDEVKALGQKAEADL 78 (245)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCC--EEEEEcCCHHHHHHHHHHhC-----CceEEEEccCCCHHHHHHHHHHHHHHc
Confidence 45899999999999999999999997 7888877641 11111111 1111110 1111 211 13
Q ss_pred CCCCEEEEcCCCCCCC---C---CchhhHHHhhHHHHHHHHHHHHHh---CCCcEEEEecCCC
Q 022947 113 TGMDIVIIPAGVPRKP---G---MTRDDLFNINAGIVKTLCEGIAKC---CPKAIVNLISNPV 166 (289)
Q Consensus 113 ~~aDiVIitag~~~~~---g---~~r~d~~~~N~~i~~~i~~~i~~~---~p~aiviv~tNPv 166 (289)
...|+||.++|..... . .+-.+.+..|+.....+++.+.+. .+.+.++++|...
T Consensus 79 ~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~ 141 (245)
T PRK12936 79 EGVDILVNNAGITKDGLFVRMSDEDWDSVLEVNLTATFRLTRELTHPMMRRRYGRIINITSVV 141 (245)
T ss_pred CCCCEEEECCCCCCCCccccCCHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCCEEEEECCHH
Confidence 4689999999864321 1 112334566666555554444322 2445666666543
No 194
>PRK07774 short chain dehydrogenase; Provisional
Probab=97.44 E-value=0.0063 Score=53.73 Aligned_cols=114 Identities=18% Similarity=0.161 Sum_probs=65.3
Q ss_pred CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCc--hhHHhhhhcccCCceEEEE-ecCCCHH---h-------hh
Q 022947 46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTNAVVRGF-LGQQQLE---D-------AL 112 (289)
Q Consensus 46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~--~g~~~DL~~~~~~~~v~~~-~~t~d~~---e-------al 112 (289)
.+++.|+|++|++|.+++..|+..|. +|+++|+++. .....++.+.. ..+..+ .+-++.+ + .+
T Consensus 6 ~k~vlItGasg~iG~~la~~l~~~g~--~vi~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 81 (250)
T PRK07774 6 DKVAIVTGAAGGIGQAYAEALAREGA--SVVVADINAEGAERVAKQIVADG--GTAIAVQVDVSDPDSAKAMADATVSAF 81 (250)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEcCCCCHHHHHHHHHHHHHHh
Confidence 45899999999999999999999997 8999998752 11112222211 111111 1112221 1 22
Q ss_pred CCCCEEEEcCCCCCC----C--CCch---hhHHHhhHHHHHHHHHHHHHhC---CCcEEEEec
Q 022947 113 TGMDIVIIPAGVPRK----P--GMTR---DDLFNINAGIVKTLCEGIAKCC---PKAIVNLIS 163 (289)
Q Consensus 113 ~~aDiVIitag~~~~----~--g~~r---~d~~~~N~~i~~~i~~~i~~~~---p~aiviv~t 163 (289)
...|+||+++|.... + ..+. .+.+..|+.....+.+.+.++. +.+.++++|
T Consensus 82 ~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~s 144 (250)
T PRK07774 82 GGIDYLVNNAAIYGGMKLDLLITVPWDYYKKFMSVNLDGALVCTRAVYKHMAKRGGGAIVNQS 144 (250)
T ss_pred CCCCEEEECCCCcCCCCCCChhhCCHHHHHHHHhhhhHHHHHHHHHHHHHHHHhCCcEEEEEe
Confidence 468999999986421 1 1111 2345567666555555555432 235666655
No 195
>PRK08278 short chain dehydrogenase; Provisional
Probab=97.43 E-value=0.0051 Score=55.71 Aligned_cols=158 Identities=16% Similarity=0.171 Sum_probs=85.5
Q ss_pred CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCch---------hHHhhhhcccCCceEEEE----ecCCCHHhhh
Q 022947 46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP---------GVTADISHMDTNAVVRGF----LGQQQLEDAL 112 (289)
Q Consensus 46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~---------g~~~DL~~~~~~~~v~~~----~~t~d~~eal 112 (289)
.+++.|+||+|.+|..++..|+..|. +|++++++... ....++.... .++..+ ....+..+.+
T Consensus 6 ~k~vlItGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~--~~~~~~~~D~~~~~~i~~~~ 81 (273)
T PRK08278 6 GKTLFITGASRGIGLAIALRAARDGA--NIVIAAKTAEPHPKLPGTIHTAAEEIEAAG--GQALPLVGDVRDEDQVAAAV 81 (273)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCC--EEEEEecccccccchhhHHHHHHHHHHhcC--CceEEEEecCCCHHHHHHHH
Confidence 35899999999999999999999997 89999986521 1111222111 112111 1111222222
Q ss_pred -------CCCCEEEEcCCCCCC-C--CCch---hhHHHhhHHHHHHHHHHHHHh---CCCcEEEEecCCCcccHHHHHHH
Q 022947 113 -------TGMDIVIIPAGVPRK-P--GMTR---DDLFNINAGIVKTLCEGIAKC---CPKAIVNLISNPVNSTVPIAAEV 176 (289)
Q Consensus 113 -------~~aDiVIitag~~~~-~--g~~r---~d~~~~N~~i~~~i~~~i~~~---~p~aiviv~tNPvd~~t~~~~~~ 176 (289)
...|++|+++|.... + ..+. ...+..|+.....+.+.+..+ ...+.++++|.+.....
T Consensus 82 ~~~~~~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~~~~~~~g~iv~iss~~~~~~------ 155 (273)
T PRK08278 82 AKAVERFGGIDICVNNASAINLTGTEDTPMKRFDLMQQINVRGTFLVSQACLPHLKKSENPHILTLSPPLNLDP------ 155 (273)
T ss_pred HHHHHHhCCCCEEEECCCCcCCCCcccCCHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCEEEEECCchhccc------
Confidence 368999999986421 1 1222 223455655554555444432 23466766664432110
Q ss_pred HHHhCCCCCCcEEEeeeccHHHHHHHHHHHcCCCCcceeeeEE
Q 022947 177 FKKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVV 219 (289)
Q Consensus 177 ~~~~~~~~~~kviG~t~lds~R~~~~lA~~l~v~~~~V~~~V~ 219 (289)
..++....++.+..-..++-+.++++++ +..|++..+
T Consensus 156 ----~~~~~~~~Y~~sK~a~~~~~~~la~el~--~~~I~v~~i 192 (273)
T PRK08278 156 ----KWFAPHTAYTMAKYGMSLCTLGLAEEFR--DDGIAVNAL 192 (273)
T ss_pred ----cccCCcchhHHHHHHHHHHHHHHHHHhh--hcCcEEEEE
Confidence 0123344556554444556677777775 345655544
No 196
>PRK12828 short chain dehydrogenase; Provisional
Probab=97.43 E-value=0.0013 Score=57.47 Aligned_cols=115 Identities=17% Similarity=0.192 Sum_probs=64.0
Q ss_pred CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCch--hHHhhhhcccCCceEEE--EecCCCHHhh-------hCC
Q 022947 46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP--GVTADISHMDTNAVVRG--FLGQQQLEDA-------LTG 114 (289)
Q Consensus 46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~--g~~~DL~~~~~~~~v~~--~~~t~d~~ea-------l~~ 114 (289)
.++|.|+|++|.+|..++..|+++|. +|+++|++... ....++.... ..+.. .....+++++ +..
T Consensus 7 ~k~vlItGatg~iG~~la~~l~~~G~--~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~D~~~~~~~~~~~~~~~~~~~~ 82 (239)
T PRK12828 7 GKVVAITGGFGGLGRATAAWLAARGA--RVALIGRGAAPLSQTLPGVPADA--LRIGGIDLVDPQAARRAVDEVNRQFGR 82 (239)
T ss_pred CCEEEEECCCCcHhHHHHHHHHHCCC--eEEEEeCChHhHHHHHHHHhhcC--ceEEEeecCCHHHHHHHHHHHHHHhCC
Confidence 45899999999999999999999997 89999987621 1122222211 11111 1111122222 336
Q ss_pred CCEEEEcCCCCCCC---CCch---hhHHHhhHHHHHHHHHHHHHh---CCCcEEEEecC
Q 022947 115 MDIVIIPAGVPRKP---GMTR---DDLFNINAGIVKTLCEGIAKC---CPKAIVNLISN 164 (289)
Q Consensus 115 aDiVIitag~~~~~---g~~r---~d~~~~N~~i~~~i~~~i~~~---~p~aiviv~tN 164 (289)
.|+||.++|..... ..+. .+.+..|......+++.+.+. .+...+++++.
T Consensus 83 ~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~~sS 141 (239)
T PRK12828 83 LDALVNIAGAFVWGTIADGDADTWDRMYGVNVKTTLNASKAALPALTASGGGRIVNIGA 141 (239)
T ss_pred cCEEEECCcccCcCChhhCCHHHHHHHHHhhchhHHHHHHHHHHHHHhcCCCEEEEECc
Confidence 89999998854211 1111 223445655555555554322 23445655554
No 197
>PRK07856 short chain dehydrogenase; Provisional
Probab=97.43 E-value=0.0027 Score=56.49 Aligned_cols=109 Identities=13% Similarity=0.096 Sum_probs=64.2
Q ss_pred CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchhHHhhhhcccCCceEEEE----ecCCCHHhhh-------CC
Q 022947 46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGF----LGQQQLEDAL-------TG 114 (289)
Q Consensus 46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g~~~DL~~~~~~~~v~~~----~~t~d~~eal-------~~ 114 (289)
.+++.|+||+|.+|..++..|+..|. +|+++|++... . ... ..+..+ ....++++.+ ..
T Consensus 6 ~k~~lItGas~gIG~~la~~l~~~g~--~v~~~~r~~~~-~---~~~----~~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 75 (252)
T PRK07856 6 GRVVLVTGGTRGIGAGIARAFLAAGA--TVVVCGRRAPE-T---VDG----RPAEFHAADVRDPDQVAALVDAIVERHGR 75 (252)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCC--EEEEEeCChhh-h---hcC----CceEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence 45899999999999999999999997 89999986521 0 000 011111 1111222333 35
Q ss_pred CCEEEEcCCCCCC-C--CCc---hhhHHHhhHHHHHHHHHHHHH----hCCCcEEEEecC
Q 022947 115 MDIVIIPAGVPRK-P--GMT---RDDLFNINAGIVKTLCEGIAK----CCPKAIVNLISN 164 (289)
Q Consensus 115 aDiVIitag~~~~-~--g~~---r~d~~~~N~~i~~~i~~~i~~----~~p~aiviv~tN 164 (289)
.|+||.++|.... + ..+ ....+..|+.....+.+.+.+ ....+.++++|.
T Consensus 76 id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~g~ii~isS 135 (252)
T PRK07856 76 LDVLVNNAGGSPYALAAEASPRFHEKIVELNLLAPLLVAQAANAVMQQQPGGGSIVNIGS 135 (252)
T ss_pred CCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCcEEEEEcc
Confidence 6999999986422 1 111 234556676666555555443 223356666664
No 198
>PRK12937 short chain dehydrogenase; Provisional
Probab=97.42 E-value=0.0032 Score=55.41 Aligned_cols=115 Identities=15% Similarity=0.113 Sum_probs=65.4
Q ss_pred CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCc---hhHHhhhhcccCCceEEEEe----cCCCHHhhh------
Q 022947 46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT---PGVTADISHMDTNAVVRGFL----GQQQLEDAL------ 112 (289)
Q Consensus 46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~---~g~~~DL~~~~~~~~v~~~~----~t~d~~eal------ 112 (289)
.++|.|+|++|.+|+.++..|+..|. ++++++.+.. .....++... ..++..+. ...++++.+
T Consensus 5 ~~~vlItG~~~~iG~~la~~l~~~g~--~v~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~Dl~~~~~~~~~~~~~~~~ 80 (245)
T PRK12937 5 NKVAIVTGASRGIGAAIARRLAADGF--AVAVNYAGSAAAADELVAEIEAA--GGRAIAVQADVADAAAVTRLFDAAETA 80 (245)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCC--EEEEecCCCHHHHHHHHHHHHhc--CCeEEEEECCCCCHHHHHHHHHHHHHH
Confidence 35899999999999999999999997 7877765441 1111222221 11222211 111222333
Q ss_pred -CCCCEEEEcCCCCCCC---C---CchhhHHHhhHHHHHHHHHHHHHh-CCCcEEEEecC
Q 022947 113 -TGMDIVIIPAGVPRKP---G---MTRDDLFNINAGIVKTLCEGIAKC-CPKAIVNLISN 164 (289)
Q Consensus 113 -~~aDiVIitag~~~~~---g---~~r~d~~~~N~~i~~~i~~~i~~~-~p~aiviv~tN 164 (289)
.+.|+||+++|..... . +.-...+..|+.....+.+.+.+. .+.+.++++|.
T Consensus 81 ~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~iv~~ss 140 (245)
T PRK12937 81 FGRIDVLVNNAGVMPLGTIADFDLEDFDRTIATNLRGAFVVLREAARHLGQGGRIINLST 140 (245)
T ss_pred cCCCCEEEECCCCCCCCChhhCCHHHHHHHHhhhchHHHHHHHHHHHHhccCcEEEEEee
Confidence 3689999999864211 0 112234556766555555555443 24556666653
No 199
>PLN02996 fatty acyl-CoA reductase
Probab=97.42 E-value=0.0022 Score=63.70 Aligned_cols=121 Identities=18% Similarity=0.121 Sum_probs=74.0
Q ss_pred CCCCCCEEEEEcCCCccHHHHHHHHHhC-CCccEEEEEeCCCc--hh--HH-hhhhccc----------------CCceE
Q 022947 42 GGSPGFKVAVLGAAGGIGQPLAMLMKIN-PLVSVLHLYDVVNT--PG--VT-ADISHMD----------------TNAVV 99 (289)
Q Consensus 42 ~~~~~~KI~IIGaaG~VGs~la~~L~~~-g~~~eI~LvD~~~~--~g--~~-~DL~~~~----------------~~~~v 99 (289)
+|-+.++|.|+||+||+|+.++..|+.. +-...|+++.+... .. .. .++.... ...++
T Consensus 7 ~~~~~k~VlvTGaTGFlG~~ll~~LL~~~~~v~~I~~LvR~~~~~~~~~rl~~~~~~~~~f~~~~~~~~~~~~~~~~~kv 86 (491)
T PLN02996 7 QFLENKTILVTGATGFLAKIFVEKILRVQPNVKKLYLLLRASDAKSATQRLHDEVIGKDLFKVLREKLGENLNSLISEKV 86 (491)
T ss_pred HHhCCCeEEEeCCCcHHHHHHHHHHHhhCCCCCEEEEEEeCCCCCCHHHHHHHHHhhchHHHHHHHhcchhhhhhhhcCE
Confidence 4556678999999999999999877754 34567888876541 11 00 1111110 01234
Q ss_pred EEEecCC----------C-HHhhhCCCCEEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhC-CCcEEEEec
Q 022947 100 RGFLGQQ----------Q-LEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCC-PKAIVNLIS 163 (289)
Q Consensus 100 ~~~~~t~----------d-~~eal~~aDiVIitag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~-p~aiviv~t 163 (289)
..+.+.- + +++.++++|+||++|+...- .....+....|+....++++.+.+.. .+.++.+.|
T Consensus 87 ~~i~GDl~~~~LGLs~~~~~~~l~~~vD~ViH~AA~v~~-~~~~~~~~~~Nv~gt~~ll~~a~~~~~~k~~V~vST 161 (491)
T PLN02996 87 TPVPGDISYDDLGVKDSNLREEMWKEIDIVVNLAATTNF-DERYDVALGINTLGALNVLNFAKKCVKVKMLLHVST 161 (491)
T ss_pred EEEecccCCcCCCCChHHHHHHHHhCCCEEEECccccCC-cCCHHHHHHHHHHHHHHHHHHHHhcCCCCeEEEEee
Confidence 4332211 1 34566899999999986432 23345567889999999998887653 344444433
No 200
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=97.41 E-value=0.00086 Score=64.31 Aligned_cols=54 Identities=19% Similarity=0.361 Sum_probs=43.9
Q ss_pred CCCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchhHHhhhhcccCCceEEEEecCCCHHhhhCCCCEEEEcC
Q 022947 45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPA 122 (289)
Q Consensus 45 ~~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~eal~~aDiVIita 122 (289)
..+||+|||+.|.+|.+++..|...|+ +|.++|++.. ++.++++++||+||++.
T Consensus 97 ~~~~I~IiGG~GlmG~slA~~l~~~G~--~V~~~d~~~~----------------------~~~~~~~~~aDlVilav 150 (374)
T PRK11199 97 DLRPVVIVGGKGQLGRLFAKMLTLSGY--QVRILEQDDW----------------------DRAEDILADAGMVIVSV 150 (374)
T ss_pred ccceEEEEcCCChhhHHHHHHHHHCCC--eEEEeCCCcc----------------------hhHHHHHhcCCEEEEeC
Confidence 447999999559999999999999997 8999997420 12457789999999995
No 201
>TIGR01832 kduD 2-deoxy-D-gluconate 3-dehydrogenase. This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation.
Probab=97.41 E-value=0.0076 Score=53.25 Aligned_cols=115 Identities=19% Similarity=0.223 Sum_probs=65.3
Q ss_pred CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchhHHhhhhcccCCceEEEEe-cCCC---HH-------hhhCC
Q 022947 46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFL-GQQQ---LE-------DALTG 114 (289)
Q Consensus 46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g~~~DL~~~~~~~~v~~~~-~t~d---~~-------eal~~ 114 (289)
.++|.|+||+|.+|.+++..|+..|. +|+++++++.......+.... .++..+. +-++ +. +.+..
T Consensus 5 ~k~vlItGas~gIG~~ia~~l~~~G~--~vi~~~r~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 80 (248)
T TIGR01832 5 GKVALVTGANTGLGQGIAVGLAEAGA--DIVGAGRSEPSETQQQVEALG--RRFLSLTADLSDIEAIKALVDSAVEEFGH 80 (248)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCC--EEEEEcCchHHHHHHHHHhcC--CceEEEECCCCCHHHHHHHHHHHHHHcCC
Confidence 46899999999999999999999997 899999765222112222111 1122111 1111 11 22356
Q ss_pred CCEEEEcCCCCCCCC---C---chhhHHHhhHHHHHHHHHHHH----HhCCCcEEEEecC
Q 022947 115 MDIVIIPAGVPRKPG---M---TRDDLFNINAGIVKTLCEGIA----KCCPKAIVNLISN 164 (289)
Q Consensus 115 aDiVIitag~~~~~g---~---~r~d~~~~N~~i~~~i~~~i~----~~~p~aiviv~tN 164 (289)
.|++|.++|...... . .-.+.+..|+.....+.+.+. +....+.+++++.
T Consensus 81 ~d~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~g~iv~~sS 140 (248)
T TIGR01832 81 IDILVNNAGIIRRADAEEFSEKDWDDVMNVNLKSVFFLTQAAAKHFLKQGRGGKIINIAS 140 (248)
T ss_pred CCEEEECCCCCCCCChhhCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCeEEEEEec
Confidence 899999998643211 1 122345667655544554443 3332456666554
No 202
>PRK08945 putative oxoacyl-(acyl carrier protein) reductase; Provisional
Probab=97.39 E-value=0.018 Score=51.00 Aligned_cols=119 Identities=19% Similarity=0.196 Sum_probs=67.2
Q ss_pred CCCCCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCc--hhHHhhhhcccCCceEEEE--ecC----C-------C
Q 022947 43 GSPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTNAVVRGF--LGQ----Q-------Q 107 (289)
Q Consensus 43 ~~~~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~--~g~~~DL~~~~~~~~v~~~--~~t----~-------d 107 (289)
..+.++|.|+|++|++|..++..|+..|. +|+++|++.. .....++.+.. ...+..+ ..+ . .
T Consensus 9 ~~~~k~vlItG~~g~iG~~la~~l~~~G~--~Vi~~~r~~~~~~~~~~~l~~~~-~~~~~~~~~d~~~~~~~~~~~~~~~ 85 (247)
T PRK08945 9 LLKDRIILVTGAGDGIGREAALTYARHGA--TVILLGRTEEKLEAVYDEIEAAG-GPQPAIIPLDLLTATPQNYQQLADT 85 (247)
T ss_pred ccCCCEEEEeCCCchHHHHHHHHHHHCCC--cEEEEeCCHHHHHHHHHHHHhcC-CCCceEEEecccCCCHHHHHHHHHH
Confidence 34566899999999999999999999887 9999998762 22223333321 1111111 000 0 1
Q ss_pred HHhhhCCCCEEEEcCCCCCC--C--CCch---hhHHHhhHHHHHHHHHHHHH---hCCCcEEEEecC
Q 022947 108 LEDALTGMDIVIIPAGVPRK--P--GMTR---DDLFNINAGIVKTLCEGIAK---CCPKAIVNLISN 164 (289)
Q Consensus 108 ~~eal~~aDiVIitag~~~~--~--g~~r---~d~~~~N~~i~~~i~~~i~~---~~p~aiviv~tN 164 (289)
+.+.+...|+||+++|.... + ..+. ...+..|+.....+.+.+.+ ..+...++++|.
T Consensus 86 ~~~~~~~id~vi~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~l~~~~~~~iv~~ss 152 (247)
T PRK08945 86 IEEQFGRLDGVLHNAGLLGELGPMEQQDPEVWQDVMQVNVNATFMLTQALLPLLLKSPAASLVFTSS 152 (247)
T ss_pred HHHHhCCCCEEEECCcccCCCCCcccCCHHHHHHHHHHccHHHHHHHHHHHHHHHhCCCCEEEEEcc
Confidence 22334568999999986322 1 1122 23455666654444444332 124455666554
No 203
>PRK05875 short chain dehydrogenase; Provisional
Probab=97.38 E-value=0.0058 Score=55.06 Aligned_cols=117 Identities=15% Similarity=0.081 Sum_probs=65.3
Q ss_pred CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCc--hhHHhhhhcccCCceEEEEe-cCCC---HHhhh-------
Q 022947 46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTNAVVRGFL-GQQQ---LEDAL------- 112 (289)
Q Consensus 46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~--~g~~~DL~~~~~~~~v~~~~-~t~d---~~eal------- 112 (289)
.++|.|+|++|.+|+.++..|+..|. +|++++++.. .....++.......++..+. +-.| ..+.+
T Consensus 7 ~k~vlItGasg~IG~~la~~l~~~G~--~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 84 (276)
T PRK05875 7 DRTYLVTGGGSGIGKGVAAGLVAAGA--AVMIVGRNPDKLAAAAEEIEALKGAGAVRYEPADVTDEDQVARAVDAATAWH 84 (276)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCC--eEEEEeCCHHHHHHHHHHHHhccCCCceEEEEcCCCCHHHHHHHHHHHHHHc
Confidence 46899999999999999999999998 8999998752 22222222111011222111 1112 22223
Q ss_pred CCCCEEEEcCCCCCCC----CCch---hhHHHhhHHHHHHHHHHHHHh---CCCcEEEEecC
Q 022947 113 TGMDIVIIPAGVPRKP----GMTR---DDLFNINAGIVKTLCEGIAKC---CPKAIVNLISN 164 (289)
Q Consensus 113 ~~aDiVIitag~~~~~----g~~r---~d~~~~N~~i~~~i~~~i~~~---~p~aiviv~tN 164 (289)
...|++|+++|..... ..+. .+.+..|+.....+.+.+.+. ...+.++++|.
T Consensus 85 ~~~d~li~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~iv~~sS 146 (276)
T PRK05875 85 GRLHGVVHCAGGSETIGPITQIDSDAWRRTVDLNVNGTMYVLKHAARELVRGGGGSFVGISS 146 (276)
T ss_pred CCCCEEEECCCcccCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEEec
Confidence 2689999999854221 1111 223455666555555444332 23456666554
No 204
>PRK08507 prephenate dehydrogenase; Validated
Probab=97.37 E-value=0.0013 Score=60.22 Aligned_cols=66 Identities=21% Similarity=0.356 Sum_probs=44.0
Q ss_pred CEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchhHHhhhhcccCCceEEEEecCCCHHhhhCCCCEEEEcC
Q 022947 47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPA 122 (289)
Q Consensus 47 ~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~eal~~aDiVIita 122 (289)
|||+|||. |.+|.+++..|...|+..+|+.+|+++.. ..++..... ... ..++.+ +.++|+||++.
T Consensus 1 m~I~iIG~-G~mG~sla~~l~~~g~~~~v~~~d~~~~~--~~~~~~~g~---~~~---~~~~~~-~~~aD~Vilav 66 (275)
T PRK08507 1 MKIGIIGL-GLMGGSLGLALKEKGLISKVYGYDHNELH--LKKALELGL---VDE---IVSFEE-LKKCDVIFLAI 66 (275)
T ss_pred CEEEEEcc-CHHHHHHHHHHHhcCCCCEEEEEcCCHHH--HHHHHHCCC---Ccc---cCCHHH-HhcCCEEEEeC
Confidence 58999998 99999999999988865578999987521 111111110 001 124444 45699999985
No 205
>TIGR03206 benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. Members of this protein family are the enzyme 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. The enzymatic properties were confirmed experimentally in Rhodopseudomonas palustris; the enzyme is homotetrameric, and not sensitive to oxygen. This enzyme is part of proposed pathway for degradation of benzoyl-CoA to 3-hydroxypimeloyl-CoA that differs from the analogous in Thauera aromatica. It also may occur in degradation of the non-aromatic compound cyclohexane-1-carboxylate.
Probab=97.37 E-value=0.0028 Score=55.97 Aligned_cols=114 Identities=18% Similarity=0.214 Sum_probs=64.8
Q ss_pred CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCc--hhHHhhhhcccCCceEEEEec-CCC---HHhhh-------
Q 022947 46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTNAVVRGFLG-QQQ---LEDAL------- 112 (289)
Q Consensus 46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~--~g~~~DL~~~~~~~~v~~~~~-t~d---~~eal------- 112 (289)
.++|.|+||+|++|+.++..|+..|. +|+++|++.. .....++.... .++..+.. -.+ .++.+
T Consensus 3 ~~~ilItGas~~iG~~la~~l~~~g~--~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~d~~~~~~~~~~~~~~~~~~ 78 (250)
T TIGR03206 3 DKTAIVTGGGGGIGGATCRRFAEEGA--KVAVFDLNREAAEKVAADIRAKG--GNAQAFACDITDRDSVDTAVAAAEQAL 78 (250)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHCCC--EEEEecCCHHHHHHHHHHHHhcC--CcEEEEEcCCCCHHHHHHHHHHHHHHc
Confidence 46899999999999999999999997 8999998762 11122232211 12222111 111 22222
Q ss_pred CCCCEEEEcCCCCCCC---CCch---hhHHHhhHHHHHHHHHHHH----HhCCCcEEEEecC
Q 022947 113 TGMDIVIIPAGVPRKP---GMTR---DDLFNINAGIVKTLCEGIA----KCCPKAIVNLISN 164 (289)
Q Consensus 113 ~~aDiVIitag~~~~~---g~~r---~d~~~~N~~i~~~i~~~i~----~~~p~aiviv~tN 164 (289)
...|++|+++|..... ..+. ...+..|+.....+.+.+. +. +...+++++.
T Consensus 79 ~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~-~~~~ii~iss 139 (250)
T TIGR03206 79 GPVDVLVNNAGWDKFGPFTKTEPPLWERLIAINLTGALHMHHAVLPGMVER-GAGRIVNIAS 139 (250)
T ss_pred CCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhc-CCeEEEEECc
Confidence 3689999999863221 1111 2245667666655555443 33 3344555554
No 206
>PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=97.36 E-value=0.0065 Score=53.44 Aligned_cols=117 Identities=17% Similarity=0.219 Sum_probs=65.7
Q ss_pred CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCc--hhHHhhhhcccCCceEEEEe-cCC---CHHhhh-------
Q 022947 46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTNAVVRGFL-GQQ---QLEDAL------- 112 (289)
Q Consensus 46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~--~g~~~DL~~~~~~~~v~~~~-~t~---d~~eal------- 112 (289)
.+++.|+|++|.+|..++..|+..|. +|++++++.. .....++... ..++..+. +-+ ++.+++
T Consensus 7 ~~~vlVtG~sg~iG~~l~~~L~~~G~--~Vi~~~r~~~~~~~~~~~~~~~--~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 82 (239)
T PRK07666 7 GKNALITGAGRGIGRAVAIALAKEGV--NVGLLARTEENLKAVAEEVEAY--GVKVVIATADVSDYEEVTAAIEQLKNEL 82 (239)
T ss_pred CCEEEEEcCCchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHHh--CCeEEEEECCCCCHHHHHHHHHHHHHHc
Confidence 35799999999999999999999997 8999998762 1112233221 11222211 111 222223
Q ss_pred CCCCEEEEcCCCCCCC---CCch---hhHHHhhHHHHHHHHHHHHHh---CCCcEEEEecCCC
Q 022947 113 TGMDIVIIPAGVPRKP---GMTR---DDLFNINAGIVKTLCEGIAKC---CPKAIVNLISNPV 166 (289)
Q Consensus 113 ~~aDiVIitag~~~~~---g~~r---~d~~~~N~~i~~~i~~~i~~~---~p~aiviv~tNPv 166 (289)
.+.|+||+++|..... ..+. .+.+..|+.....+.+.+.++ ...+.+++++...
T Consensus 83 ~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~ss~~ 145 (239)
T PRK07666 83 GSIDILINNAGISKFGKFLELDPAEWEKIIQVNLMGVYYATRAVLPSMIERQSGDIINISSTA 145 (239)
T ss_pred CCccEEEEcCccccCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCcEEEEEcchh
Confidence 3799999999864321 1111 234556665444444444432 2234455555443
No 207
>PRK06914 short chain dehydrogenase; Provisional
Probab=97.36 E-value=0.007 Score=54.64 Aligned_cols=35 Identities=14% Similarity=0.047 Sum_probs=31.0
Q ss_pred CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCC
Q 022947 46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN 82 (289)
Q Consensus 46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~ 82 (289)
.+++.|+||+|.+|..++..|+.+|. +|++++++.
T Consensus 3 ~k~~lItGasg~iG~~la~~l~~~G~--~V~~~~r~~ 37 (280)
T PRK06914 3 KKIAIVTGASSGFGLLTTLELAKKGY--LVIATMRNP 37 (280)
T ss_pred CCEEEEECCCchHHHHHHHHHHhCCC--EEEEEeCCH
Confidence 34689999999999999999999997 899998865
No 208
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=97.35 E-value=0.00072 Score=62.45 Aligned_cols=90 Identities=22% Similarity=0.291 Sum_probs=58.4
Q ss_pred ccccccccccCCCCCCCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCC--chhHHhhhhcccCCceEEEEecCCCH
Q 022947 31 SGLGRMDCRAKGGSPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTNAVVRGFLGQQQL 108 (289)
Q Consensus 31 ~~~~~~~~~~~~~~~~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~--~~g~~~DL~~~~~~~~v~~~~~t~d~ 108 (289)
.+|-+.........+.+||+|+|+ |.+|.++++.|+..|. .+|+++|++. ++..+.++.+.. +..... ..+++
T Consensus 112 ~G~~~~l~~~~~~~~~k~vlIlGa-GGaaraia~aL~~~G~-~~I~I~nR~~~ka~~la~~l~~~~--~~~~~~-~~~~~ 186 (284)
T PRK12549 112 SGFAESFRRGLPDASLERVVQLGA-GGAGAAVAHALLTLGV-ERLTIFDVDPARAAALADELNARF--PAARAT-AGSDL 186 (284)
T ss_pred HHHHHHHHhhccCccCCEEEEECC-cHHHHHHHHHHHHcCC-CEEEEECCCHHHHHHHHHHHHhhC--CCeEEE-eccch
Confidence 445555433222234569999998 9999999999998884 5899999986 333444444322 112221 12344
Q ss_pred HhhhCCCCEEEEc--CCCC
Q 022947 109 EDALTGMDIVIIP--AGVP 125 (289)
Q Consensus 109 ~eal~~aDiVIit--ag~~ 125 (289)
++.++++|+||.| +|+.
T Consensus 187 ~~~~~~aDiVInaTp~Gm~ 205 (284)
T PRK12549 187 AAALAAADGLVHATPTGMA 205 (284)
T ss_pred HhhhCCCCEEEECCcCCCC
Confidence 5678999999998 5654
No 209
>PRK08263 short chain dehydrogenase; Provisional
Probab=97.34 E-value=0.0011 Score=59.98 Aligned_cols=112 Identities=13% Similarity=-0.010 Sum_probs=62.7
Q ss_pred CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchhHHhhhhcccCCceEEEEe-cCCC---HHh-------hhCC
Q 022947 46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFL-GQQQ---LED-------ALTG 114 (289)
Q Consensus 46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g~~~DL~~~~~~~~v~~~~-~t~d---~~e-------al~~ 114 (289)
.++|.|+||+|.+|++++..|+.+|. +|++.+++.... .++.+.. ...+..+. +-+| +.+ .+..
T Consensus 3 ~k~vlItGasg~iG~~~a~~l~~~g~--~V~~~~r~~~~~--~~~~~~~-~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 77 (275)
T PRK08263 3 EKVWFITGASRGFGRAWTEAALERGD--RVVATARDTATL--ADLAEKY-GDRLLPLALDVTDRAAVFAAVETAVEHFGR 77 (275)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHCCC--EEEEEECCHHHH--HHHHHhc-cCCeeEEEccCCCHHHHHHHHHHHHHHcCC
Confidence 34799999999999999999999997 899999875211 1111110 00111110 0111 111 2346
Q ss_pred CCEEEEcCCCCCCC---CCc---hhhHHHhhHHHH----HHHHHHHHHhCCCcEEEEec
Q 022947 115 MDIVIIPAGVPRKP---GMT---RDDLFNINAGIV----KTLCEGIAKCCPKAIVNLIS 163 (289)
Q Consensus 115 aDiVIitag~~~~~---g~~---r~d~~~~N~~i~----~~i~~~i~~~~p~aiviv~t 163 (289)
.|.||+++|..... ..+ -.+.+..|+... +.+.+.+++.... .++++|
T Consensus 78 ~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~-~iv~vs 135 (275)
T PRK08263 78 LDIVVNNAGYGLFGMIEEVTESEARAQIDTNFFGALWVTQAVLPYLREQRSG-HIIQIS 135 (275)
T ss_pred CCEEEECCCCccccccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCC-EEEEEc
Confidence 79999999975321 111 223455666654 4455555554444 444444
No 210
>PRK06101 short chain dehydrogenase; Provisional
Probab=97.34 E-value=0.0048 Score=54.60 Aligned_cols=114 Identities=19% Similarity=0.180 Sum_probs=65.3
Q ss_pred CEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchhHHhhhhcccCCce-EE-EEecCCCHHhhhCC----CCEEEE
Q 022947 47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAV-VR-GFLGQQQLEDALTG----MDIVII 120 (289)
Q Consensus 47 ~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g~~~DL~~~~~~~~-v~-~~~~t~d~~eal~~----aDiVIi 120 (289)
.++.|+||+|.+|..++..|+.+|. +|+++|+++... .++........ +. ..+..+++++.++. .|.+|+
T Consensus 2 ~~vlItGas~giG~~la~~L~~~G~--~V~~~~r~~~~~--~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~d~~i~ 77 (240)
T PRK06101 2 TAVLITGATSGIGKQLALDYAKQGW--QVIACGRNQSVL--DELHTQSANIFTLAFDVTDHPGTKAALSQLPFIPELWIF 77 (240)
T ss_pred cEEEEEcCCcHHHHHHHHHHHhCCC--EEEEEECCHHHH--HHHHHhcCCCeEEEeeCCCHHHHHHHHHhcccCCCEEEE
Confidence 4799999999999999999999997 899999875211 11111100001 11 11111223333333 478888
Q ss_pred cCCCCCCCC---Cch---hhHHHhhHHHHHHHHHHHHHhC-CCcEEEEecC
Q 022947 121 PAGVPRKPG---MTR---DDLFNINAGIVKTLCEGIAKCC-PKAIVNLISN 164 (289)
Q Consensus 121 tag~~~~~g---~~r---~d~~~~N~~i~~~i~~~i~~~~-p~aiviv~tN 164 (289)
.+|...... .+. .+.+..|+.....+.+.+...- +...+++++.
T Consensus 78 ~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~iv~isS 128 (240)
T PRK06101 78 NAGDCEYMDDGKVDATLMARVFNVNVLGVANCIEGIQPHLSCGHRVVIVGS 128 (240)
T ss_pred cCcccccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCeEEEEec
Confidence 887532111 121 2356778777777777766542 3445555554
No 211
>PRK07890 short chain dehydrogenase; Provisional
Probab=97.34 E-value=0.0022 Score=57.03 Aligned_cols=117 Identities=15% Similarity=0.132 Sum_probs=67.1
Q ss_pred CCCCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCc--hhHHhhhhcccCCceEEEEe-cCCC---HH-------h
Q 022947 44 SPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTNAVVRGFL-GQQQ---LE-------D 110 (289)
Q Consensus 44 ~~~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~--~g~~~DL~~~~~~~~v~~~~-~t~d---~~-------e 110 (289)
.+.++|.|+||+|.+|.+++..|+.+|. +|+++|+++. .....++.... .++..+. +.+| ++ +
T Consensus 3 l~~k~vlItGa~~~IG~~la~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~ 78 (258)
T PRK07890 3 LKGKVVVVSGVGPGLGRTLAVRAARAGA--DVVLAARTAERLDEVAAEIDDLG--RRALAVPTDITDEDQCANLVALALE 78 (258)
T ss_pred cCCCEEEEECCCCcHHHHHHHHHHHcCC--EEEEEeCCHHHHHHHHHHHHHhC--CceEEEecCCCCHHHHHHHHHHHHH
Confidence 3456899999999999999999999998 8999998762 11222222111 1111111 1112 11 1
Q ss_pred hhCCCCEEEEcCCCCCC--C--CCch---hhHHHhhHHHHHHHHHHHHHhC--CCcEEEEecC
Q 022947 111 ALTGMDIVIIPAGVPRK--P--GMTR---DDLFNINAGIVKTLCEGIAKCC--PKAIVNLISN 164 (289)
Q Consensus 111 al~~aDiVIitag~~~~--~--g~~r---~d~~~~N~~i~~~i~~~i~~~~--p~aiviv~tN 164 (289)
.+...|+||+++|.... + ..+. .+.+..|+.....+.+.+.++- ....++++|.
T Consensus 79 ~~g~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~ii~~sS 141 (258)
T PRK07890 79 RFGRVDALVNNAFRVPSMKPLADADFAHWRAVIELNVLGTLRLTQAFTPALAESGGSIVMINS 141 (258)
T ss_pred HcCCccEEEECCccCCCCCCcccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhCCCEEEEEec
Confidence 23578999999986422 1 1122 2345666665555665555431 1245666554
No 212
>PRK07024 short chain dehydrogenase; Provisional
Probab=97.34 E-value=0.003 Score=56.41 Aligned_cols=35 Identities=34% Similarity=0.341 Sum_probs=31.7
Q ss_pred CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCC
Q 022947 46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN 82 (289)
Q Consensus 46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~ 82 (289)
+++|.|+|++|.+|..++..|++.|. +|+++|++.
T Consensus 2 ~~~vlItGas~gIG~~la~~l~~~G~--~v~~~~r~~ 36 (257)
T PRK07024 2 PLKVFITGASSGIGQALAREYARQGA--TLGLVARRT 36 (257)
T ss_pred CCEEEEEcCCcHHHHHHHHHHHHCCC--EEEEEeCCH
Confidence 35899999999999999999999997 899999875
No 213
>PRK05876 short chain dehydrogenase; Provisional
Probab=97.34 E-value=0.0045 Score=56.30 Aligned_cols=115 Identities=17% Similarity=0.162 Sum_probs=65.1
Q ss_pred CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCc--hhHHhhhhcccCCceEEEEe-c---CCCHHhh-------h
Q 022947 46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTNAVVRGFL-G---QQQLEDA-------L 112 (289)
Q Consensus 46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~--~g~~~DL~~~~~~~~v~~~~-~---t~d~~ea-------l 112 (289)
.+.+.|+|++|.+|..++..|+..|. +|++.|+++. .....++.... .++..+. + ..++.+. +
T Consensus 6 ~k~vlVTGas~gIG~ala~~La~~G~--~Vv~~~r~~~~l~~~~~~l~~~~--~~~~~~~~Dv~d~~~v~~~~~~~~~~~ 81 (275)
T PRK05876 6 GRGAVITGGASGIGLATGTEFARRGA--RVVLGDVDKPGLRQAVNHLRAEG--FDVHGVMCDVRHREEVTHLADEAFRLL 81 (275)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC--CeEEEEeCCCCCHHHHHHHHHHHHHHc
Confidence 45799999999999999999999997 8999998762 22222332211 1222111 1 1122222 2
Q ss_pred CCCCEEEEcCCCCCCC---CCch---hhHHHhhHHHHH----HHHHHHHHhCCCcEEEEecC
Q 022947 113 TGMDIVIIPAGVPRKP---GMTR---DDLFNINAGIVK----TLCEGIAKCCPKAIVNLISN 164 (289)
Q Consensus 113 ~~aDiVIitag~~~~~---g~~r---~d~~~~N~~i~~----~i~~~i~~~~p~aiviv~tN 164 (289)
...|++|.+||..... ..+. ...+..|+.... .+.+.+.+....+.+++++.
T Consensus 82 g~id~li~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~p~m~~~~~~g~iv~isS 143 (275)
T PRK05876 82 GHVDVVFSNAGIVVGGPIVEMTHDDWRWVIDVDLWGSIHTVEAFLPRLLEQGTGGHVVFTAS 143 (275)
T ss_pred CCCCEEEECCCcCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCCEEEEeCC
Confidence 3579999999864211 1122 233556655444 44444444443456666654
No 214
>PLN02256 arogenate dehydrogenase
Probab=97.33 E-value=0.0019 Score=60.36 Aligned_cols=65 Identities=18% Similarity=0.230 Sum_probs=45.2
Q ss_pred CCCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchhHHhhhhcccCCceEEEEecCCCHHhhh-CCCCEEEEcC
Q 022947 45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDAL-TGMDIVIIPA 122 (289)
Q Consensus 45 ~~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~eal-~~aDiVIita 122 (289)
+++||+|||+ |.+|..++..|...|. +|+.+|.+.....+.++ . +.. .++.++.+ .++|+||++.
T Consensus 35 ~~~kI~IIG~-G~mG~slA~~L~~~G~--~V~~~d~~~~~~~a~~~---g----v~~---~~~~~e~~~~~aDvVilav 100 (304)
T PLN02256 35 RKLKIGIVGF-GNFGQFLAKTFVKQGH--TVLATSRSDYSDIAAEL---G----VSF---FRDPDDFCEEHPDVVLLCT 100 (304)
T ss_pred CCCEEEEEee-CHHHHHHHHHHHhCCC--EEEEEECccHHHHHHHc---C----Cee---eCCHHHHhhCCCCEEEEec
Confidence 4569999998 9999999999988886 89999987522112211 1 111 13455555 4799999985
No 215
>PRK07576 short chain dehydrogenase; Provisional
Probab=97.33 E-value=0.0037 Score=56.27 Aligned_cols=117 Identities=18% Similarity=0.179 Sum_probs=65.8
Q ss_pred CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCc--hhHHhhhhcccCCceEEEE----ecCCCHHhhh-------
Q 022947 46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTNAVVRGF----LGQQQLEDAL------- 112 (289)
Q Consensus 46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~--~g~~~DL~~~~~~~~v~~~----~~t~d~~eal------- 112 (289)
.++|.|+||+|.+|..++..|+..|. +|+++|++.. .....++.... .++..+ ...+++.+.+
T Consensus 9 ~k~ilItGasggIG~~la~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dv~~~~~i~~~~~~~~~~~ 84 (264)
T PRK07576 9 GKNVVVVGGTSGINLGIAQAFARAGA--NVAVASRSQEKVDAAVAQLQQAG--PEGLGVSADVRDYAAVEAAFAQIADEF 84 (264)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHHhC--CceEEEECCCCCHHHHHHHHHHHHHHc
Confidence 35899999999999999999999997 8999998752 11222222211 111111 1111222222
Q ss_pred CCCCEEEEcCCCCCCC---CCch---hhHHHhhHHHHHHHHHHHHHh--CCCcEEEEecCCC
Q 022947 113 TGMDIVIIPAGVPRKP---GMTR---DDLFNINAGIVKTLCEGIAKC--CPKAIVNLISNPV 166 (289)
Q Consensus 113 ~~aDiVIitag~~~~~---g~~r---~d~~~~N~~i~~~i~~~i~~~--~p~aiviv~tNPv 166 (289)
...|++|.++|..... ..+. .+.+..|+.....+.+.+... .+++.|+++|.+.
T Consensus 85 ~~iD~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~l~~~~g~iv~iss~~ 146 (264)
T PRK07576 85 GPIDVLVSGAAGNFPAPAAGMSANGFKTVVDIDLLGTFNVLKAAYPLLRRPGASIIQISAPQ 146 (264)
T ss_pred CCCCEEEECCCCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCEEEEECChh
Confidence 4579999998753211 1111 223456665555555444332 1346777776643
No 216
>PRK06841 short chain dehydrogenase; Provisional
Probab=97.32 E-value=0.0027 Score=56.33 Aligned_cols=113 Identities=21% Similarity=0.300 Sum_probs=64.5
Q ss_pred CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCc-hhHHhhhhcccCCceEEEE-ecCCC---HHhh-------hC
Q 022947 46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT-PGVTADISHMDTNAVVRGF-LGQQQ---LEDA-------LT 113 (289)
Q Consensus 46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~-~g~~~DL~~~~~~~~v~~~-~~t~d---~~ea-------l~ 113 (289)
.++|.|+||+|.+|..++..|++.|. +|++++++.. .....++.. ..+..+ .+..+ +++. +.
T Consensus 15 ~k~vlItGas~~IG~~la~~l~~~G~--~Vi~~~r~~~~~~~~~~~~~----~~~~~~~~Dl~~~~~~~~~~~~~~~~~~ 88 (255)
T PRK06841 15 GKVAVVTGGASGIGHAIAELFAAKGA--RVALLDRSEDVAEVAAQLLG----GNAKGLVCDVSDSQSVEAAVAAVISAFG 88 (255)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHhhC----CceEEEEecCCCHHHHHHHHHHHHHHhC
Confidence 35899999999999999999999997 8999998762 111122211 111111 01111 2122 24
Q ss_pred CCCEEEEcCCCCCCCC---Cch---hhHHHhhHHHHHHHHHHHHHh---CCCcEEEEecC
Q 022947 114 GMDIVIIPAGVPRKPG---MTR---DDLFNINAGIVKTLCEGIAKC---CPKAIVNLISN 164 (289)
Q Consensus 114 ~aDiVIitag~~~~~g---~~r---~d~~~~N~~i~~~i~~~i~~~---~p~aiviv~tN 164 (289)
..|+||+++|...... .+. ...+..|+.....+.+.+..+ ...+.++++|.
T Consensus 89 ~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~sS 148 (255)
T PRK06841 89 RIDILVNSAGVALLAPAEDVSEEDWDKTIDINLKGSFLMAQAVGRHMIAAGGGKIVNLAS 148 (255)
T ss_pred CCCEEEECCCCCCCCChhhCCHHHHHHHHHHhcHHHHHHHHHHHHHHHhcCCceEEEEcc
Confidence 6799999998643211 111 224566766655555555443 22455665553
No 217
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=97.32 E-value=0.0026 Score=58.66 Aligned_cols=68 Identities=24% Similarity=0.250 Sum_probs=43.8
Q ss_pred CCCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCc-hhHH--hhhhcccCCceEEEEecCCCHHhhhCCCCEEEEc
Q 022947 45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT-PGVT--ADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIP 121 (289)
Q Consensus 45 ~~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~-~g~~--~DL~~~~~~~~v~~~~~t~d~~eal~~aDiVIit 121 (289)
..++|+|+|. |.+|.+++..|...|+...++-+|.+.. ...+ +++.+.. . .+...++.++||+||++
T Consensus 2 ~~~~v~IvG~-GliG~s~a~~l~~~g~~v~i~g~d~~~~~~~~a~~lgv~d~~----~-----~~~~~~~~~~aD~Viva 71 (279)
T COG0287 2 ASMKVGIVGL-GLMGGSLARALKEAGLVVRIIGRDRSAATLKAALELGVIDEL----T-----VAGLAEAAAEADLVIVA 71 (279)
T ss_pred CCcEEEEECC-chHHHHHHHHHHHcCCeEEEEeecCcHHHHHHHhhcCccccc----c-----cchhhhhcccCCEEEEe
Confidence 3579999998 9999999999999998444444444331 1111 2222211 0 11124778999999998
Q ss_pred C
Q 022947 122 A 122 (289)
Q Consensus 122 a 122 (289)
.
T Consensus 72 v 72 (279)
T COG0287 72 V 72 (279)
T ss_pred c
Confidence 5
No 218
>PRK12367 short chain dehydrogenase; Provisional
Probab=97.32 E-value=0.008 Score=54.01 Aligned_cols=100 Identities=16% Similarity=0.229 Sum_probs=59.8
Q ss_pred CEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchhHHhhhhcccCCceEE-EEecCCCHHhhhCCCCEEEEcCCCC
Q 022947 47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVR-GFLGQQQLEDALTGMDIVIIPAGVP 125 (289)
Q Consensus 47 ~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g~~~DL~~~~~~~~v~-~~~~t~d~~eal~~aDiVIitag~~ 125 (289)
+++.|+||+|.+|..++..|+..|. +|+++|+++....... .+.. ...+. ......+..+.+...|++|.+||..
T Consensus 15 k~~lITGas~gIG~ala~~l~~~G~--~Vi~~~r~~~~~~~~~-~~~~-~~~~~~D~~~~~~~~~~~~~iDilVnnAG~~ 90 (245)
T PRK12367 15 KRIGITGASGALGKALTKAFRAKGA--KVIGLTHSKINNSESN-DESP-NEWIKWECGKEESLDKQLASLDVLILNHGIN 90 (245)
T ss_pred CEEEEEcCCcHHHHHHHHHHHHCCC--EEEEEECCchhhhhhh-ccCC-CeEEEeeCCCHHHHHHhcCCCCEEEECCccC
Confidence 5899999999999999999999997 8999998751111110 1110 11111 1111123445677899999999874
Q ss_pred CCCCCc---hhhHHHhhHHHHHHHHHHH
Q 022947 126 RKPGMT---RDDLFNINAGIVKTLCEGI 150 (289)
Q Consensus 126 ~~~g~~---r~d~~~~N~~i~~~i~~~i 150 (289)
.....+ -.+.+..|+.....+++.+
T Consensus 91 ~~~~~~~~~~~~~~~vN~~g~~~l~~~~ 118 (245)
T PRK12367 91 PGGRQDPENINKALEINALSSWRLLELF 118 (245)
T ss_pred CcCCCCHHHHHHHHHHHhHHHHHHHHHH
Confidence 322222 2345666765544444443
No 219
>PRK12491 pyrroline-5-carboxylate reductase; Reviewed
Probab=97.32 E-value=0.0016 Score=59.86 Aligned_cols=68 Identities=13% Similarity=0.152 Sum_probs=46.9
Q ss_pred CCEEEEEcCCCccHHHHHHHHHhCCC--ccEEEEEeCCCchhHHhhhhcccCCceEEEEecCCCHHhhhCCCCEEEEcC
Q 022947 46 GFKVAVLGAAGGIGQPLAMLMKINPL--VSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPA 122 (289)
Q Consensus 46 ~~KI~IIGaaG~VGs~la~~L~~~g~--~~eI~LvD~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~eal~~aDiVIita 122 (289)
.+||++||+ |.+|++++..|+..++ ..+|+.+|+++.. ...+.... .+.. .++..+.+++||+||++.
T Consensus 2 ~~~IgfIG~-G~MG~aia~~L~~~g~~~~~~I~v~~r~~~~--~~~l~~~~---g~~~---~~~~~e~~~~aDiIiLav 71 (272)
T PRK12491 2 NKQIGFIGC-GNMGIAMIGGMINKNIVSPDQIICSDLNVSN--LKNASDKY---GITI---TTNNNEVANSADILILSI 71 (272)
T ss_pred CCeEEEECc-cHHHHHHHHHHHHCCCCCCceEEEECCCHHH--HHHHHHhc---CcEE---eCCcHHHHhhCCEEEEEe
Confidence 358999998 9999999999988874 3579999886521 22222211 1222 124457789999999985
No 220
>PRK08219 short chain dehydrogenase; Provisional
Probab=97.31 E-value=0.0019 Score=56.10 Aligned_cols=75 Identities=19% Similarity=0.206 Sum_probs=46.4
Q ss_pred CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchhHHhhhhcccCCceEEE--EecCCCHHhhhC---CCCEEEE
Q 022947 46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRG--FLGQQQLEDALT---GMDIVII 120 (289)
Q Consensus 46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g~~~DL~~~~~~~~v~~--~~~t~d~~eal~---~aDiVIi 120 (289)
++++.|+|++|++|..++..|+++ . +|+++|++... ..++.+......+.. .....+++++++ +.|+||+
T Consensus 3 ~~~vlVtG~~g~iG~~l~~~l~~~-~--~V~~~~r~~~~--~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~id~vi~ 77 (227)
T PRK08219 3 RPTALITGASRGIGAAIARELAPT-H--TLLLGGRPAER--LDELAAELPGATPFPVDLTDPEAIAAAVEQLGRLDVLVH 77 (227)
T ss_pred CCEEEEecCCcHHHHHHHHHHHhh-C--CEEEEeCCHHH--HHHHHHHhccceEEecCCCCHHHHHHHHHhcCCCCEEEE
Confidence 468999999999999999988877 5 89999986521 112221110011110 111123344444 6999999
Q ss_pred cCCCC
Q 022947 121 PAGVP 125 (289)
Q Consensus 121 tag~~ 125 (289)
++|..
T Consensus 78 ~ag~~ 82 (227)
T PRK08219 78 NAGVA 82 (227)
T ss_pred CCCcC
Confidence 99864
No 221
>PRK07814 short chain dehydrogenase; Provisional
Probab=97.30 E-value=0.0088 Score=53.69 Aligned_cols=116 Identities=16% Similarity=0.146 Sum_probs=66.6
Q ss_pred CCCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCc--hhHHhhhhcccCCceEEEEe-cCCCH---Hhh-------
Q 022947 45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTNAVVRGFL-GQQQL---EDA------- 111 (289)
Q Consensus 45 ~~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~--~g~~~DL~~~~~~~~v~~~~-~t~d~---~ea------- 111 (289)
+.+++.|+|++|.+|.+++..|+.+|. +|+++|++.. .....++.... ..+..+. +-++. .++
T Consensus 9 ~~~~vlItGasggIG~~~a~~l~~~G~--~Vi~~~r~~~~~~~~~~~l~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~ 84 (263)
T PRK07814 9 DDQVAVVTGAGRGLGAAIALAFAEAGA--DVLIAARTESQLDEVAEQIRAAG--RRAHVVAADLAHPEATAGLAGQAVEA 84 (263)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEccCCCHHHHHHHHHHHHHH
Confidence 346899999999999999999999997 9999998752 12222222211 1222111 11222 111
Q ss_pred hCCCCEEEEcCCCCCCC---CCc---hhhHHHhhHHHHHHHHHHHH----HhCCCcEEEEecC
Q 022947 112 LTGMDIVIIPAGVPRKP---GMT---RDDLFNINAGIVKTLCEGIA----KCCPKAIVNLISN 164 (289)
Q Consensus 112 l~~aDiVIitag~~~~~---g~~---r~d~~~~N~~i~~~i~~~i~----~~~p~aiviv~tN 164 (289)
+...|+||.+||..... ..+ -.+.+..|+.....+.+.+. +..+.+.+++++.
T Consensus 85 ~~~id~vi~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~g~iv~~sS 147 (263)
T PRK07814 85 FGRLDIVVNNVGGTMPNPLLSTSTKDLADAFTFNVATAHALTVAAVPLMLEHSGGGSVINISS 147 (263)
T ss_pred cCCCCEEEECCCCCCCCChhhCCHHHHHHHHHhhcHHHHHHHHHHHHHHHhhcCCeEEEEEcc
Confidence 24789999999853221 111 22345556555555444443 3345566666665
No 222
>PRK12480 D-lactate dehydrogenase; Provisional
Probab=97.29 E-value=0.0016 Score=61.52 Aligned_cols=92 Identities=16% Similarity=0.199 Sum_probs=60.0
Q ss_pred CCCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchhHHhhhhcccCCceEEEEecCCCHHhhhCCCCEEEEcCCC
Q 022947 45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGV 124 (289)
Q Consensus 45 ~~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~eal~~aDiVIitag~ 124 (289)
..++|+|||. |.+|+.+|..|...|. +|+.+|++.... .+. +. ...++++.+++||+|+++...
T Consensus 145 ~g~~VgIIG~-G~IG~~vA~~L~~~G~--~V~~~d~~~~~~--~~~--------~~---~~~~l~ell~~aDiVil~lP~ 208 (330)
T PRK12480 145 KNMTVAIIGT-GRIGAATAKIYAGFGA--TITAYDAYPNKD--LDF--------LT---YKDSVKEAIKDADIISLHVPA 208 (330)
T ss_pred CCCEEEEECC-CHHHHHHHHHHHhCCC--EEEEEeCChhHh--hhh--------hh---ccCCHHHHHhcCCEEEEeCCC
Confidence 3458999998 9999999999988887 999999865210 110 11 123578899999999998532
Q ss_pred CCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecCC
Q 022947 125 PRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNP 165 (289)
Q Consensus 125 ~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~aiviv~tNP 165 (289)
. + .+...+. .+.+....|++++|+++--
T Consensus 209 t--~---------~t~~li~--~~~l~~mk~gavlIN~aRG 236 (330)
T PRK12480 209 N--K---------ESYHLFD--KAMFDHVKKGAILVNAARG 236 (330)
T ss_pred c--H---------HHHHHHh--HHHHhcCCCCcEEEEcCCc
Confidence 1 1 1112221 1233333578899888643
No 223
>PRK07063 short chain dehydrogenase; Provisional
Probab=97.29 E-value=0.0078 Score=53.72 Aligned_cols=116 Identities=21% Similarity=0.227 Sum_probs=64.9
Q ss_pred CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCc--hhHHhhhhcccCCceEEEEe-cCC---CHHhhh-------
Q 022947 46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTNAVVRGFL-GQQ---QLEDAL------- 112 (289)
Q Consensus 46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~--~g~~~DL~~~~~~~~v~~~~-~t~---d~~eal------- 112 (289)
.+++.|+|++|.+|..++..|+..|. +|+++|+++. .....++.......++..+. +-+ ++.+.+
T Consensus 7 ~k~vlVtGas~gIG~~~a~~l~~~G~--~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 84 (260)
T PRK07063 7 GKVALVTGAAQGIGAAIARAFAREGA--AVALADLDAALAERAAAAIARDVAGARVLAVPADVTDAASVAAAVAAAEEAF 84 (260)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhccCCceEEEEEccCCCHHHHHHHHHHHHHHh
Confidence 45799999999999999999999997 8999998762 22223333210111222111 111 222222
Q ss_pred CCCCEEEEcCCCCCCC--C-Cc---hhhHHHhhHHHH----HHHHHHHHHhCCCcEEEEecC
Q 022947 113 TGMDIVIIPAGVPRKP--G-MT---RDDLFNINAGIV----KTLCEGIAKCCPKAIVNLISN 164 (289)
Q Consensus 113 ~~aDiVIitag~~~~~--g-~~---r~d~~~~N~~i~----~~i~~~i~~~~p~aiviv~tN 164 (289)
...|++|.++|..... . .+ -...+..|+... +...+.+.+. ..+.|+++|.
T Consensus 85 g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~-~~g~iv~isS 145 (260)
T PRK07063 85 GPLDVLVNNAGINVFADPLAMTDEDWRRCFAVDLDGAWNGCRAVLPGMVER-GRGSIVNIAS 145 (260)
T ss_pred CCCcEEEECCCcCCCCChhhCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhh-CCeEEEEECC
Confidence 4689999999864211 1 11 122344555544 4444444433 3456666654
No 224
>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]
Probab=97.29 E-value=0.0028 Score=58.00 Aligned_cols=119 Identities=16% Similarity=0.170 Sum_probs=75.5
Q ss_pred CCCCCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCC--chhHHhhhhcccCCceEEEE----ecCCCHHh------
Q 022947 43 GSPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTNAVVRGF----LGQQQLED------ 110 (289)
Q Consensus 43 ~~~~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~--~~g~~~DL~~~~~~~~v~~~----~~t~d~~e------ 110 (289)
.++++++.|+|||+-+|..+|..|+.+|+ +|+|+.+++ +...+.+|.+.. ...+..+ +..++.+.
T Consensus 3 ~~~~~~~lITGASsGIG~~~A~~lA~~g~--~liLvaR~~~kL~~la~~l~~~~-~v~v~vi~~DLs~~~~~~~l~~~l~ 79 (265)
T COG0300 3 PMKGKTALITGASSGIGAELAKQLARRGY--NLILVARREDKLEALAKELEDKT-GVEVEVIPADLSDPEALERLEDELK 79 (265)
T ss_pred CCCCcEEEEECCCchHHHHHHHHHHHCCC--EEEEEeCcHHHHHHHHHHHHHhh-CceEEEEECcCCChhHHHHHHHHHH
Confidence 45677999999999999999999999998 999999987 344555666532 1122221 11122211
Q ss_pred -hhCCCCEEEEcCCCCCCC------CCchhhHHHhhHHHHH----HHHHHHHHhCCCcEEEEecCC
Q 022947 111 -ALTGMDIVIIPAGVPRKP------GMTRDDLFNINAGIVK----TLCEGIAKCCPKAIVNLISNP 165 (289)
Q Consensus 111 -al~~aDiVIitag~~~~~------g~~r~d~~~~N~~i~~----~i~~~i~~~~p~aiviv~tNP 165 (289)
.....|+.|..||...-. -++-.+++.-|+-.+. .+.+.|.+. -.+-||+++.-
T Consensus 80 ~~~~~IdvLVNNAG~g~~g~f~~~~~~~~~~mi~lN~~a~~~LT~~~lp~m~~~-~~G~IiNI~S~ 144 (265)
T COG0300 80 ERGGPIDVLVNNAGFGTFGPFLELSLDEEEEMIQLNILALTRLTKAVLPGMVER-GAGHIINIGSA 144 (265)
T ss_pred hcCCcccEEEECCCcCCccchhhCChHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCceEEEEech
Confidence 112689999999975322 1123457777765554 445555543 35667777543
No 225
>PRK05993 short chain dehydrogenase; Provisional
Probab=97.28 E-value=0.0021 Score=58.28 Aligned_cols=113 Identities=10% Similarity=0.060 Sum_probs=64.3
Q ss_pred CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchhHHhhhhcccCCceEE-EEecCCCHHhhh--------CCCC
Q 022947 46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVR-GFLGQQQLEDAL--------TGMD 116 (289)
Q Consensus 46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g~~~DL~~~~~~~~v~-~~~~t~d~~eal--------~~aD 116 (289)
+++|.|+||+|.+|..++..|+..|. +|++.++++... .++..... ..+. ......++++++ ...|
T Consensus 4 ~k~vlItGasggiG~~la~~l~~~G~--~Vi~~~r~~~~~--~~l~~~~~-~~~~~Dl~d~~~~~~~~~~~~~~~~g~id 78 (277)
T PRK05993 4 KRSILITGCSSGIGAYCARALQSDGW--RVFATCRKEEDV--AALEAEGL-EAFQLDYAEPESIAALVAQVLELSGGRLD 78 (277)
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEECCHHHH--HHHHHCCc-eEEEccCCCHHHHHHHHHHHHHHcCCCcc
Confidence 35799999999999999999999997 899999875211 11211110 0011 011111121222 2579
Q ss_pred EEEEcCCCCCCC---CCc---hhhHHHhhHHH----HHHHHHHHHHhCCCcEEEEecC
Q 022947 117 IVIIPAGVPRKP---GMT---RDDLFNINAGI----VKTLCEGIAKCCPKAIVNLISN 164 (289)
Q Consensus 117 iVIitag~~~~~---g~~---r~d~~~~N~~i----~~~i~~~i~~~~p~aiviv~tN 164 (289)
++|.+||..... ..+ -.+.+..|+.. .+.+.+.+++.. .+.|+++|.
T Consensus 79 ~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~l~~~~~~~-~g~iv~isS 135 (277)
T PRK05993 79 ALFNNGAYGQPGAVEDLPTEALRAQFEANFFGWHDLTRRVIPVMRKQG-QGRIVQCSS 135 (277)
T ss_pred EEEECCCcCCCCCcccCCHHHHHHHHhHHhHHHHHHHHHHHHHHhhcC-CCEEEEECC
Confidence 999999864321 111 12345667655 566666666544 345555554
No 226
>PRK06181 short chain dehydrogenase; Provisional
Probab=97.27 E-value=0.0055 Score=54.70 Aligned_cols=115 Identities=17% Similarity=0.174 Sum_probs=65.6
Q ss_pred CEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCc--hhHHhhhhcccCCceEEEEe-cCCC---HHhhh-------C
Q 022947 47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTNAVVRGFL-GQQQ---LEDAL-------T 113 (289)
Q Consensus 47 ~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~--~g~~~DL~~~~~~~~v~~~~-~t~d---~~eal-------~ 113 (289)
++|.|+||+|.+|..++..|+..|. +|+++|+++. .....++.... ..+..+. +-.| +.+++ .
T Consensus 2 ~~vlVtGasg~iG~~la~~l~~~g~--~Vi~~~r~~~~~~~~~~~l~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~~~ 77 (263)
T PRK06181 2 KVVIITGASEGIGRALAVRLARAGA--QLVLAARNETRLASLAQELADHG--GEALVVPTDVSDAEACERLIEAAVARFG 77 (263)
T ss_pred CEEEEecCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEccCCCHHHHHHHHHHHHHHcC
Confidence 4799999999999999999998887 8999998752 11222332221 1222211 1112 22222 3
Q ss_pred CCCEEEEcCCCCCCCC---C-ch---hhHHHhhHHHHHHHHHHHHHhC--CCcEEEEecCC
Q 022947 114 GMDIVIIPAGVPRKPG---M-TR---DDLFNINAGIVKTLCEGIAKCC--PKAIVNLISNP 165 (289)
Q Consensus 114 ~aDiVIitag~~~~~g---~-~r---~d~~~~N~~i~~~i~~~i~~~~--p~aiviv~tNP 165 (289)
+.|+||.++|...... . +. .+.+..|+.....+.+.+.++. ..+.++++|..
T Consensus 78 ~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~iv~~sS~ 138 (263)
T PRK06181 78 GIDILVNNAGITMWSRFDELTDLSVFERVMRVNYLGAVYCTHAALPHLKASRGQIVVVSSL 138 (263)
T ss_pred CCCEEEECCCcccccchhccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCEEEEEecc
Confidence 6899999998643211 1 11 2235666666555555554321 23455555543
No 227
>TIGR03325 BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase. Members of this family occur as the BphD protein of biphenyl catabolism and as the TodD protein of toluene catabolism. Members catalyze the second step in each pathway and proved interchangeable when tested; the first and fourth enzymes in each pathway confer metabolic specificity. In the context of biphenyl degradation, the enzyme acts as cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase (EC 1.3.1.56), while in toluene degradation it acts as cis-toluene dihydrodiol dehydrogenase.
Probab=97.27 E-value=0.0029 Score=56.73 Aligned_cols=35 Identities=23% Similarity=0.291 Sum_probs=31.7
Q ss_pred CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCC
Q 022947 46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN 82 (289)
Q Consensus 46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~ 82 (289)
.+++.|+||+|.+|..++..|+..|. +|+++|+++
T Consensus 5 ~k~vlItGas~gIG~~ia~~l~~~G~--~V~~~~r~~ 39 (262)
T TIGR03325 5 GEVVLVTGGASGLGRAIVDRFVAEGA--RVAVLDKSA 39 (262)
T ss_pred CcEEEEECCCChHHHHHHHHHHHCCC--EEEEEeCCH
Confidence 46899999999999999999999997 899999865
No 228
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=97.27 E-value=0.0033 Score=55.17 Aligned_cols=34 Identities=29% Similarity=0.407 Sum_probs=31.0
Q ss_pred CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCC
Q 022947 46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVV 81 (289)
Q Consensus 46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~ 81 (289)
..||+|+|+ |.+|+.++..|+..|+ .+|+|+|.+
T Consensus 21 ~~~V~IvG~-GglGs~ia~~La~~Gv-g~i~lvD~D 54 (200)
T TIGR02354 21 QATVAICGL-GGLGSNVAINLARAGI-GKLILVDFD 54 (200)
T ss_pred CCcEEEECc-CHHHHHHHHHHHHcCC-CEEEEECCC
Confidence 458999999 9999999999999996 589999998
No 229
>PRK08213 gluconate 5-dehydrogenase; Provisional
Probab=97.26 E-value=0.0048 Score=55.07 Aligned_cols=115 Identities=17% Similarity=0.156 Sum_probs=67.5
Q ss_pred CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCch--hHHhhhhcccCCceEEEEe-cCCC---HHhh-------h
Q 022947 46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP--GVTADISHMDTNAVVRGFL-GQQQ---LEDA-------L 112 (289)
Q Consensus 46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~--g~~~DL~~~~~~~~v~~~~-~t~d---~~ea-------l 112 (289)
.++|.|+|++|.+|++++..|+..|. +|+++|.+... ....++... ..++..+. +-+| +.+. +
T Consensus 12 ~k~ilItGa~g~IG~~la~~l~~~G~--~V~~~~r~~~~~~~~~~~i~~~--~~~~~~~~~Dl~d~~~i~~~~~~~~~~~ 87 (259)
T PRK08213 12 GKTALVTGGSRGLGLQIAEALGEAGA--RVVLSARKAEELEEAAAHLEAL--GIDALWIAADVADEADIERLAEETLERF 87 (259)
T ss_pred CCEEEEECCCchHHHHHHHHHHHcCC--EEEEEeCCHHHHHHHHHHHHhc--CCeEEEEEccCCCHHHHHHHHHHHHHHh
Confidence 35899999999999999999999997 89999986521 111122211 11211111 1112 2111 2
Q ss_pred CCCCEEEEcCCCCCCCC---C---chhhHHHhhHHHHHHHHHHHHHh----CCCcEEEEecC
Q 022947 113 TGMDIVIIPAGVPRKPG---M---TRDDLFNINAGIVKTLCEGIAKC----CPKAIVNLISN 164 (289)
Q Consensus 113 ~~aDiVIitag~~~~~g---~---~r~d~~~~N~~i~~~i~~~i~~~----~p~aiviv~tN 164 (289)
...|.||+++|...... . .-.+.+..|+.....+.+.+.++ .+.+.++++|.
T Consensus 88 ~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~l~~~~~~~~v~~sS 149 (259)
T PRK08213 88 GHVDILVNNAGATWGAPAEDHPVEAWDKVMNLNVRGLFLLSQAVAKRSMIPRGYGRIINVAS 149 (259)
T ss_pred CCCCEEEECCCCCCCCChhhCCHHHHHHHHhHHhHHHHHHHHHHHHHHHHhcCCeEEEEECC
Confidence 46899999998632111 1 12234667877777777766544 23456666554
No 230
>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed
Probab=97.25 E-value=0.0033 Score=55.37 Aligned_cols=115 Identities=20% Similarity=0.264 Sum_probs=65.1
Q ss_pred CCCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCc--hhHHhhhhcccCCceEEEEec----CCCHHhhh------
Q 022947 45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTNAVVRGFLG----QQQLEDAL------ 112 (289)
Q Consensus 45 ~~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~--~g~~~DL~~~~~~~~v~~~~~----t~d~~eal------ 112 (289)
+.++|.|+||+|++|..++..|+.+|. +|++++++.. .....++.... ..+..+.. ..++++.+
T Consensus 5 ~~~~ilItGasg~iG~~l~~~l~~~g~--~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~ 80 (251)
T PRK12826 5 EGRVALVTGAARGIGRAIAVRLAADGA--EVIVVDICGDDAAATAELVEAAG--GKARARQVDVRDRAALKAAVAAGVED 80 (251)
T ss_pred CCCEEEEcCCCCcHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC--CeEEEEECCCCCHHHHHHHHHHHHHH
Confidence 346899999999999999999999997 8999998752 11222222211 12222211 11222222
Q ss_pred -CCCCEEEEcCCCCCC-C--CCch---hhHHHhhHHHHHHHHHHH----HHhCCCcEEEEecC
Q 022947 113 -TGMDIVIIPAGVPRK-P--GMTR---DDLFNINAGIVKTLCEGI----AKCCPKAIVNLISN 164 (289)
Q Consensus 113 -~~aDiVIitag~~~~-~--g~~r---~d~~~~N~~i~~~i~~~i----~~~~p~aiviv~tN 164 (289)
...|+||+++|.... + ..+. .+.+..|+.....+.+.+ .+.. ...++++|.
T Consensus 81 ~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~-~~~ii~~ss 142 (251)
T PRK12826 81 FGRLDILVANAGIFPLTPFAEMDDEQWERVIDVNLTGTFLLTQAALPALIRAG-GGRIVLTSS 142 (251)
T ss_pred hCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcC-CcEEEEEec
Confidence 378999999876432 1 1122 234556666555555444 3333 344555443
No 231
>PRK08340 glucose-1-dehydrogenase; Provisional
Probab=97.25 E-value=0.0065 Score=54.35 Aligned_cols=34 Identities=18% Similarity=0.142 Sum_probs=31.4
Q ss_pred CEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCC
Q 022947 47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN 82 (289)
Q Consensus 47 ~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~ 82 (289)
|++.|+|++|.+|..++..|+..|. +|++.|+++
T Consensus 1 m~vlItGas~gIG~aia~~l~~~G~--~V~~~~r~~ 34 (259)
T PRK08340 1 MNVLVTASSRGIGFNVARELLKKGA--RVVISSRNE 34 (259)
T ss_pred CeEEEEcCCcHHHHHHHHHHHHcCC--EEEEEeCCH
Confidence 5899999999999999999999997 899999876
No 232
>PRK12745 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=97.24 E-value=0.014 Score=51.76 Aligned_cols=34 Identities=24% Similarity=0.235 Sum_probs=30.5
Q ss_pred CEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCC
Q 022947 47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN 82 (289)
Q Consensus 47 ~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~ 82 (289)
++|.|+|++|++|+.++..|+..|. +|+++|...
T Consensus 3 k~vlItG~sg~iG~~la~~L~~~g~--~vi~~~r~~ 36 (256)
T PRK12745 3 PVALVTGGRRGIGLGIARALAAAGF--DLAINDRPD 36 (256)
T ss_pred cEEEEeCCCchHHHHHHHHHHHCCC--EEEEEecCc
Confidence 4789999999999999999999997 899999754
No 233
>PRK14982 acyl-ACP reductase; Provisional
Probab=97.24 E-value=0.0019 Score=61.25 Aligned_cols=97 Identities=25% Similarity=0.276 Sum_probs=63.1
Q ss_pred CCCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCch--hHHhhhhcccCCceEEEEecCCCHHhhhCCCCEEEEcC
Q 022947 45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP--GVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPA 122 (289)
Q Consensus 45 ~~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~--g~~~DL~~~~~~~~v~~~~~t~d~~eal~~aDiVIita 122 (289)
..++|.|+||+|++|+.++..|....-..+|+++++++.. ....++... . ..++++++.++|+||.++
T Consensus 154 ~~k~VLVtGAtG~IGs~lar~L~~~~gv~~lilv~R~~~rl~~La~el~~~----~------i~~l~~~l~~aDiVv~~t 223 (340)
T PRK14982 154 SKATVAVVGATGDIGSAVCRWLDAKTGVAELLLVARQQERLQELQAELGGG----K------ILSLEEALPEADIVVWVA 223 (340)
T ss_pred CCCEEEEEccChHHHHHHHHHHHhhCCCCEEEEEcCCHHHHHHHHHHhccc----c------HHhHHHHHccCCEEEECC
Confidence 4568999999999999999988754224589999886521 111222111 1 124668899999999998
Q ss_pred CCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecCCCccc
Q 022947 123 GVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNST 169 (289)
Q Consensus 123 g~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~aiviv~tNPvd~~ 169 (289)
+.+...--+..++ .+..+++=++-|=|+-
T Consensus 224 s~~~~~~I~~~~l------------------~~~~~viDiAvPRDVd 252 (340)
T PRK14982 224 SMPKGVEIDPETL------------------KKPCLMIDGGYPKNLD 252 (340)
T ss_pred cCCcCCcCCHHHh------------------CCCeEEEEecCCCCCC
Confidence 8764211111111 3567777778887775
No 234
>PRK12827 short chain dehydrogenase; Provisional
Probab=97.24 E-value=0.01 Score=52.04 Aligned_cols=102 Identities=19% Similarity=0.323 Sum_probs=60.6
Q ss_pred CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCc--hhHH----hhhhcccCCceEEEEe-cCCC---HHhhh---
Q 022947 46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVT----ADISHMDTNAVVRGFL-GQQQ---LEDAL--- 112 (289)
Q Consensus 46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~--~g~~----~DL~~~~~~~~v~~~~-~t~d---~~eal--- 112 (289)
.++|.|+||+|.+|..++..|+.+|. ++++++.... .... .++... ...+..+. +-.+ +++.+
T Consensus 6 ~~~ilItGasg~iG~~la~~l~~~g~--~v~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~Dl~~~~~~~~~~~~~ 81 (249)
T PRK12827 6 SRRVLITGGSGGLGRAIAVRLAADGA--DVIVLDIHPMRGRAEADAVAAGIEAA--GGKALGLAFDVRDFAATRAALDAG 81 (249)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCC--eEEEEcCcccccHHHHHHHHHHHHhc--CCcEEEEEccCCCHHHHHHHHHHH
Confidence 46899999999999999999999998 8999886431 1111 112111 11222111 1112 22222
Q ss_pred ----CCCCEEEEcCCCCCCC---CCch---hhHHHhhHHHHHHHHHHHH
Q 022947 113 ----TGMDIVIIPAGVPRKP---GMTR---DDLFNINAGIVKTLCEGIA 151 (289)
Q Consensus 113 ----~~aDiVIitag~~~~~---g~~r---~d~~~~N~~i~~~i~~~i~ 151 (289)
...|.||+++|..... ..+. ...+..|......+++.+.
T Consensus 82 ~~~~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~ 130 (249)
T PRK12827 82 VEEFGRLDILVNNAGIATDAAFAELSIEEWDDVIDVNLDGFFNVTQAAL 130 (249)
T ss_pred HHHhCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhhHHHHHHHHHH
Confidence 4689999999865321 1111 2345677777777777766
No 235
>PRK12939 short chain dehydrogenase; Provisional
Probab=97.23 E-value=0.011 Score=52.07 Aligned_cols=115 Identities=16% Similarity=0.218 Sum_probs=66.0
Q ss_pred CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCc--hhHHhhhhcccCCceEEEEe-cCCC---HHhh-------h
Q 022947 46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTNAVVRGFL-GQQQ---LEDA-------L 112 (289)
Q Consensus 46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~--~g~~~DL~~~~~~~~v~~~~-~t~d---~~ea-------l 112 (289)
.++|.|+|++|.+|+.++..|+..|. +|+++++++. .....++.... .++..+. +..| +++. +
T Consensus 7 ~~~vlItGa~g~iG~~la~~l~~~G~--~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 82 (250)
T PRK12939 7 GKRALVTGAARGLGAAFAEALAEAGA--TVAFNDGLAAEARELAAALEAAG--GRAHAIAADLADPASVQRFFDAAAAAL 82 (250)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHcCC--EEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEccCCCHHHHHHHHHHHHHHc
Confidence 46899999999999999999999997 8999987652 22222332211 1222211 1112 1111 2
Q ss_pred CCCCEEEEcCCCCCCC---CCch---hhHHHhhHHHHHHHHHHHHHh---CCCcEEEEecC
Q 022947 113 TGMDIVIIPAGVPRKP---GMTR---DDLFNINAGIVKTLCEGIAKC---CPKAIVNLISN 164 (289)
Q Consensus 113 ~~aDiVIitag~~~~~---g~~r---~d~~~~N~~i~~~i~~~i~~~---~p~aiviv~tN 164 (289)
.+.|+||.++|..... ..+. ...+..|......+.+.+.++ .+.+.++++|.
T Consensus 83 ~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~iv~isS 143 (250)
T PRK12939 83 GGLDGLVNNAGITNSKSATELDIDTWDAVMNVNVRGTFLMLRAALPHLRDSGRGRIVNLAS 143 (250)
T ss_pred CCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCeEEEEECc
Confidence 5789999999864321 1111 223455666555555554432 23456666554
No 236
>PRK06179 short chain dehydrogenase; Provisional
Probab=97.23 E-value=0.0028 Score=56.90 Aligned_cols=111 Identities=16% Similarity=0.156 Sum_probs=62.3
Q ss_pred CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchhHHhhhhcccCCceEE-EEecCCCHHhhh-------CCCCE
Q 022947 46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVR-GFLGQQQLEDAL-------TGMDI 117 (289)
Q Consensus 46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g~~~DL~~~~~~~~v~-~~~~t~d~~eal-------~~aDi 117 (289)
.++|.|+||+|.+|.+++..|+.+|. +|++.+++...... .... ..+. ......++++++ ...|+
T Consensus 4 ~~~vlVtGasg~iG~~~a~~l~~~g~--~V~~~~r~~~~~~~--~~~~---~~~~~D~~d~~~~~~~~~~~~~~~g~~d~ 76 (270)
T PRK06179 4 SKVALVTGASSGIGRATAEKLARAGY--RVFGTSRNPARAAP--IPGV---ELLELDVTDDASVQAAVDEVIARAGRIDV 76 (270)
T ss_pred CCEEEEecCCCHHHHHHHHHHHHCCC--EEEEEeCChhhccc--cCCC---eeEEeecCCHHHHHHHHHHHHHhCCCCCE
Confidence 35799999999999999999999997 89999987521110 0000 0001 111112233333 35799
Q ss_pred EEEcCCCCCCCC---Cc---hhhHHHhhHHHHHHHHH----HHHHhCCCcEEEEecC
Q 022947 118 VIIPAGVPRKPG---MT---RDDLFNINAGIVKTLCE----GIAKCCPKAIVNLISN 164 (289)
Q Consensus 118 VIitag~~~~~g---~~---r~d~~~~N~~i~~~i~~----~i~~~~p~aiviv~tN 164 (289)
+|.++|...... .+ -.+.+..|......+.+ .+++.. .+.|+++|.
T Consensus 77 li~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~-~~~iv~isS 132 (270)
T PRK06179 77 LVNNAGVGLAGAAEESSIAQAQALFDTNVFGILRMTRAVLPHMRAQG-SGRIINISS 132 (270)
T ss_pred EEECCCCCCCcCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcC-CceEEEECC
Confidence 999998753221 11 13345556544444444 444443 345555554
No 237
>PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=97.23 E-value=0.0015 Score=60.53 Aligned_cols=91 Identities=15% Similarity=0.245 Sum_probs=57.3
Q ss_pred CEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchhHHhhhhcccCCceEEEEecCCCHHhhhCC---CCEEEEcCC
Q 022947 47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTG---MDIVIIPAG 123 (289)
Q Consensus 47 ~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~eal~~---aDiVIitag 123 (289)
|||+|||. |.+|+.++..|...++ +|+++|+++.. ..++.+.. ... ..++++.+++ +|+||++..
T Consensus 1 m~Ig~IGl-G~mG~~mA~~L~~~g~--~v~v~dr~~~~--~~~~~~~g----~~~---~~s~~~~~~~~~~advVi~~vp 68 (299)
T PRK12490 1 MKLGLIGL-GKMGGNMAERLREDGH--EVVGYDVNQEA--VDVAGKLG----ITA---RHSLEELVSKLEAPRTIWVMVP 68 (299)
T ss_pred CEEEEEcc-cHHHHHHHHHHHhCCC--EEEEEECCHHH--HHHHHHCC----Cee---cCCHHHHHHhCCCCCEEEEEec
Confidence 58999998 9999999999999887 89999987522 12222211 111 2355566655 699999842
Q ss_pred CCCCCCCchhhHHHhhHHHHHHHHHHHHHh-CCCcEEEEecC
Q 022947 124 VPRKPGMTRDDLFNINAGIVKTLCEGIAKC-CPKAIVNLISN 164 (289)
Q Consensus 124 ~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~-~p~aiviv~tN 164 (289)
.. +.++++++.+... .|+.++|..|+
T Consensus 69 ~~---------------~~~~~v~~~i~~~l~~g~ivid~st 95 (299)
T PRK12490 69 AG---------------EVTESVIKDLYPLLSPGDIVVDGGN 95 (299)
T ss_pred Cc---------------hHHHHHHHHHhccCCCCCEEEECCC
Confidence 11 2334444445443 36677777643
No 238
>PTZ00431 pyrroline carboxylate reductase; Provisional
Probab=97.22 E-value=0.0024 Score=58.01 Aligned_cols=90 Identities=14% Similarity=0.185 Sum_probs=58.2
Q ss_pred CCEEEEEcCCCccHHHHHHHHHhCCCc--cEEEEEeCCCchhHHhhhhcccCCceEEEEecCCCHHhhhCCCCEEEEcCC
Q 022947 46 GFKVAVLGAAGGIGQPLAMLMKINPLV--SVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAG 123 (289)
Q Consensus 46 ~~KI~IIGaaG~VGs~la~~L~~~g~~--~eI~LvD~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~eal~~aDiVIitag 123 (289)
.|||+|||+ |.+|++++..|...+.. .+++.+|.++.. + .... ..+..+.++++|+||++.
T Consensus 3 ~mkI~iIG~-G~mG~ai~~~l~~~~~~~~~~i~~~~~~~~~-----~-------~~~~---~~~~~~~~~~~D~Vilav- 65 (260)
T PTZ00431 3 NIRVGFIGL-GKMGSALAYGIENSNIIGKENIYYHTPSKKN-----T-------PFVY---LQSNEELAKTCDIIVLAV- 65 (260)
T ss_pred CCEEEEECc-cHHHHHHHHHHHhCCCCCcceEEEECCChhc-----C-------CeEE---eCChHHHHHhCCEEEEEe-
Confidence 479999998 99999999999887643 358888875421 0 0111 124456788999999984
Q ss_pred CCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecCCCc
Q 022947 124 VPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVN 167 (289)
Q Consensus 124 ~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~aiviv~tNPvd 167 (289)
+ -..+.++++.+..+-++..++.+.+-+.
T Consensus 66 -k--------------p~~~~~vl~~i~~~l~~~~iIS~~aGi~ 94 (260)
T PTZ00431 66 -K--------------PDLAGKVLLEIKPYLGSKLLISICGGLN 94 (260)
T ss_pred -C--------------HHHHHHHHHHHHhhccCCEEEEEeCCcc
Confidence 1 1234555556655433345666666665
No 239
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=97.21 E-value=0.0057 Score=56.94 Aligned_cols=117 Identities=15% Similarity=0.114 Sum_probs=70.6
Q ss_pred CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCC--chhHH----hhhhcccCCceEEEEecCCCHHhhhCCCCEEE
Q 022947 46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVT----ADISHMDTNAVVRGFLGQQQLEDALTGMDIVI 119 (289)
Q Consensus 46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~--~~g~~----~DL~~~~~~~~v~~~~~t~d~~eal~~aDiVI 119 (289)
.|||+|+|+ |.||+.++..|...|. +|.++++.. .+... +.+........+... ..+ .+.....|+||
T Consensus 2 ~m~I~IiGa-GaiG~~~a~~L~~~G~--~V~lv~r~~~~~~~i~~~~Gl~i~~~g~~~~~~~~--~~~-~~~~~~~D~vi 75 (305)
T PRK05708 2 SMTWHILGA-GSLGSLWACRLARAGL--PVRLILRDRQRLAAYQQAGGLTLVEQGQASLYAIP--AET-ADAAEPIHRLL 75 (305)
T ss_pred CceEEEECC-CHHHHHHHHHHHhCCC--CeEEEEechHHHHHHhhcCCeEEeeCCcceeeccC--CCC-cccccccCEEE
Confidence 479999999 9999999999998887 899999853 11000 001100000011110 111 13356889999
Q ss_pred EcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHh-CCCcEEEEecCCCcccHHHHHHHHHHhCCCCCCcEEEe
Q 022947 120 IPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKC-CPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGV 191 (289)
Q Consensus 120 itag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~-~p~aiviv~tNPvd~~t~~~~~~~~~~~~~~~~kviG~ 191 (289)
+|.-. . -..+.++.++.+ .+++.++.+-|=++.... +++. ++.+++++-
T Consensus 76 v~vK~---------------~-~~~~al~~l~~~l~~~t~vv~lQNGv~~~e~-----l~~~--~~~~~v~~g 125 (305)
T PRK05708 76 LACKA---------------Y-DAEPAVASLAHRLAPGAELLLLQNGLGSQDA-----VAAR--VPHARCIFA 125 (305)
T ss_pred EECCH---------------H-hHHHHHHHHHhhCCCCCEEEEEeCCCCCHHH-----HHHh--CCCCcEEEE
Confidence 98521 1 133445556654 388989889999887542 3332 667777754
No 240
>PRK12742 oxidoreductase; Provisional
Probab=97.21 E-value=0.0062 Score=53.36 Aligned_cols=147 Identities=16% Similarity=0.152 Sum_probs=74.8
Q ss_pred CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchhHHhhhhcccCCceEEEEecCCC---HHhh---hCCCCEEE
Q 022947 46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQ---LEDA---LTGMDIVI 119 (289)
Q Consensus 46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g~~~DL~~~~~~~~v~~~~~t~d---~~ea---l~~aDiVI 119 (289)
.++|.|+||+|.||..++..|+..|. +|++.+..... ...++.... ....... +.+| +.+. ....|++|
T Consensus 6 ~k~vlItGasggIG~~~a~~l~~~G~--~v~~~~~~~~~-~~~~l~~~~-~~~~~~~-D~~~~~~~~~~~~~~~~id~li 80 (237)
T PRK12742 6 GKKVLVLGGSRGIGAAIVRRFVTDGA--NVRFTYAGSKD-AAERLAQET-GATAVQT-DSADRDAVIDVVRKSGALDILV 80 (237)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCC--EEEEecCCCHH-HHHHHHHHh-CCeEEec-CCCCHHHHHHHHHHhCCCcEEE
Confidence 45899999999999999999999987 78877653311 111111100 0111100 1112 2122 34589999
Q ss_pred EcCCCCCCCC---Cc---hhhHHHhhHHHHHHHHHHHHHh-CCCcEEEEecCCCcccHHHHHHHHHHhCCCCCCcEEEee
Q 022947 120 IPAGVPRKPG---MT---RDDLFNINAGIVKTLCEGIAKC-CPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGVT 192 (289)
Q Consensus 120 itag~~~~~g---~~---r~d~~~~N~~i~~~i~~~i~~~-~p~aiviv~tNPvd~~t~~~~~~~~~~~~~~~~kviG~t 192 (289)
.++|...... .+ -...+..|+.....++..+.+. .+.+.+++++.-.... ...+....++.+
T Consensus 81 ~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~g~iv~isS~~~~~-----------~~~~~~~~Y~~s 149 (237)
T PRK12742 81 VNAGIAVFGDALELDADDIDRLFKINIHAPYHASVEAARQMPEGGRIIIIGSVNGDR-----------MPVAGMAAYAAS 149 (237)
T ss_pred ECCCCCCCCCcccCCHHHHHHHHhHHHHHHHHHHHHHHHHHhcCCeEEEEecccccc-----------CCCCCCcchHHh
Confidence 9998643211 11 1234555655444443333332 2345566555422110 012333445554
Q ss_pred eccHHHHHHHHHHHcC
Q 022947 193 MLDVVRANTFVAEVLG 208 (289)
Q Consensus 193 ~lds~R~~~~lA~~l~ 208 (289)
......+-+.++++++
T Consensus 150 Kaa~~~~~~~la~~~~ 165 (237)
T PRK12742 150 KSALQGMARGLARDFG 165 (237)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 4333445566777764
No 241
>COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]
Probab=97.21 E-value=0.0025 Score=58.94 Aligned_cols=66 Identities=18% Similarity=0.247 Sum_probs=49.0
Q ss_pred CEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchhHHhhhhcccCCceEEEEecCCCHHhhhCCCCEEEEcCC
Q 022947 47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAG 123 (289)
Q Consensus 47 ~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~eal~~aDiVIitag 123 (289)
+||++||. |.+|+.+|..|...|+ ++..+|+++.+. +..+..... . . ..+..++.+++|+||.+..
T Consensus 1 ~kIafIGL-G~MG~pmA~~L~~aG~--~v~v~~r~~~ka-~~~~~~~Ga--~--~---a~s~~eaa~~aDvVitmv~ 66 (286)
T COG2084 1 MKIAFIGL-GIMGSPMAANLLKAGH--EVTVYNRTPEKA-AELLAAAGA--T--V---AASPAEAAAEADVVITMLP 66 (286)
T ss_pred CeEEEEcC-chhhHHHHHHHHHCCC--EEEEEeCChhhh-hHHHHHcCC--c--c---cCCHHHHHHhCCEEEEecC
Confidence 58999998 9999999999999999 999999986332 222222111 1 1 1245789999999999853
No 242
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=97.20 E-value=0.002 Score=57.58 Aligned_cols=71 Identities=21% Similarity=0.222 Sum_probs=46.0
Q ss_pred CEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCch-hHHhhhhcccCCceEEEEecC--CCHHhh-hCCCCEEEEcC
Q 022947 47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP-GVTADISHMDTNAVVRGFLGQ--QQLEDA-LTGMDIVIIPA 122 (289)
Q Consensus 47 ~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~-g~~~DL~~~~~~~~v~~~~~t--~d~~ea-l~~aDiVIita 122 (289)
|+|+|+|+ |.+|+++|..|...|+ +|+++|.++.. .... .+.. ...+.....+ .-++++ +.++|++|.+-
T Consensus 1 m~iiIiG~-G~vG~~va~~L~~~g~--~Vv~Id~d~~~~~~~~--~~~~-~~~~v~gd~t~~~~L~~agi~~aD~vva~t 74 (225)
T COG0569 1 MKIIIIGA-GRVGRSVARELSEEGH--NVVLIDRDEERVEEFL--ADEL-DTHVVIGDATDEDVLEEAGIDDADAVVAAT 74 (225)
T ss_pred CEEEEECC-cHHHHHHHHHHHhCCC--ceEEEEcCHHHHHHHh--hhhc-ceEEEEecCCCHHHHHhcCCCcCCEEEEee
Confidence 68999999 9999999999999998 99999998721 1111 1100 1111111111 123344 68999999875
Q ss_pred C
Q 022947 123 G 123 (289)
Q Consensus 123 g 123 (289)
|
T Consensus 75 ~ 75 (225)
T COG0569 75 G 75 (225)
T ss_pred C
Confidence 4
No 243
>PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=97.20 E-value=0.0026 Score=55.67 Aligned_cols=35 Identities=29% Similarity=0.481 Sum_probs=31.8
Q ss_pred CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCC
Q 022947 46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN 82 (289)
Q Consensus 46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~ 82 (289)
+++|.|+||+|.+|..++..|+.+|+ +|+++++++
T Consensus 5 ~~~ilItGasg~iG~~l~~~l~~~g~--~v~~~~r~~ 39 (246)
T PRK05653 5 GKTALVTGASRGIGRAIALRLAADGA--KVVIYDSNE 39 (246)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEeCCh
Confidence 35899999999999999999999998 799999876
No 244
>TIGR01963 PHB_DH 3-hydroxybutyrate dehydrogenase. This model represents a subfamily of the short chain dehydrogenases. Characterized members so far as 3-hydroxybutyrate dehydrogenases and are found in species that accumulate ester polmers called polyhydroxyalkanoic acids (PHAs) under certain conditions. Several members of the family are from species not known to accumulate PHAs, including Oceanobacillus iheyensis and Bacillus subtilis. However, polymer formation is not required for there be a role for 3-hydroxybutyrate dehydrogenase; it may be members of this family have the same function in those species.
Probab=97.20 E-value=0.0054 Score=54.19 Aligned_cols=34 Identities=26% Similarity=0.324 Sum_probs=31.1
Q ss_pred CEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCC
Q 022947 47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN 82 (289)
Q Consensus 47 ~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~ 82 (289)
++|.|+|++|++|+.++..|+.+|. +|++++++.
T Consensus 2 ~~vlItGa~g~lG~~l~~~l~~~g~--~v~~~~r~~ 35 (255)
T TIGR01963 2 KTALVTGAASGIGLAIALALAAAGA--NVVVNDLGE 35 (255)
T ss_pred CEEEEcCCcchHHHHHHHHHHHCCC--EEEEEeCCH
Confidence 4799999999999999999999998 899999876
No 245
>PRK06500 short chain dehydrogenase; Provisional
Probab=97.19 E-value=0.0059 Score=53.80 Aligned_cols=101 Identities=19% Similarity=0.198 Sum_probs=61.3
Q ss_pred CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCc--hhHHhhhhcccCCceEEEEe-cCCCH----------Hhhh
Q 022947 46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTNAVVRGFL-GQQQL----------EDAL 112 (289)
Q Consensus 46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~--~g~~~DL~~~~~~~~v~~~~-~t~d~----------~eal 112 (289)
.++|.|+||+|.+|..++..|+..|. +|+++++++. .....++. .++..+. +..|. .+.+
T Consensus 6 ~k~vlItGasg~iG~~la~~l~~~g~--~v~~~~r~~~~~~~~~~~~~-----~~~~~~~~D~~~~~~~~~~~~~~~~~~ 78 (249)
T PRK06500 6 GKTALITGGTSGIGLETARQFLAEGA--RVAITGRDPASLEAARAELG-----ESALVIRADAGDVAAQKALAQALAEAF 78 (249)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCC--EEEEecCCHHHHHHHHHHhC-----CceEEEEecCCCHHHHHHHHHHHHHHh
Confidence 35899999999999999999999997 8999988752 11111111 1111110 11121 1223
Q ss_pred CCCCEEEEcCCCCCCC---CCch---hhHHHhhHHHHHHHHHHHHHh
Q 022947 113 TGMDIVIIPAGVPRKP---GMTR---DDLFNINAGIVKTLCEGIAKC 153 (289)
Q Consensus 113 ~~aDiVIitag~~~~~---g~~r---~d~~~~N~~i~~~i~~~i~~~ 153 (289)
...|+||+++|..... ..+. ...+..|+.....+.+.+.++
T Consensus 79 ~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~ 125 (249)
T PRK06500 79 GRLDAVFINAGVAKFAPLEDWDEAMFDRSFNTNVKGPYFLIQALLPL 125 (249)
T ss_pred CCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 5789999999864321 1111 235667777777777776653
No 246
>PRK12746 short chain dehydrogenase; Provisional
Probab=97.19 E-value=0.017 Score=51.26 Aligned_cols=115 Identities=18% Similarity=0.189 Sum_probs=63.0
Q ss_pred CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEe-CCCc--hhHHhhhhcccCCceEEEEe-cCCC---HHhhh------
Q 022947 46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYD-VVNT--PGVTADISHMDTNAVVRGFL-GQQQ---LEDAL------ 112 (289)
Q Consensus 46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD-~~~~--~g~~~DL~~~~~~~~v~~~~-~t~d---~~eal------ 112 (289)
.++|.|+|++|.+|+.++..|+.+|. ++++.+ ++.. .....++.... ..+..+. +-.| +.+++
T Consensus 6 ~~~ilItGasg~iG~~la~~l~~~G~--~v~i~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~d~~~i~~~~~~~~~~ 81 (254)
T PRK12746 6 GKVALVTGASRGIGRAIAMRLANDGA--LVAIHYGRNKQAADETIREIESNG--GKAFLIEADLNSIDGVKKLVEQLKNE 81 (254)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCC--EEEEEcCCCHHHHHHHHHHHHhcC--CcEEEEEcCcCCHHHHHHHHHHHHHH
Confidence 35899999999999999999999987 776653 4331 11111222111 1121111 1112 22222
Q ss_pred -------CCCCEEEEcCCCCCCCC---Cch---hhHHHhhHHHHHHHHHHHHHhC-CCcEEEEecC
Q 022947 113 -------TGMDIVIIPAGVPRKPG---MTR---DDLFNINAGIVKTLCEGIAKCC-PKAIVNLISN 164 (289)
Q Consensus 113 -------~~aDiVIitag~~~~~g---~~r---~d~~~~N~~i~~~i~~~i~~~~-p~aiviv~tN 164 (289)
.+.|+||+++|...... .+. ...+..|+.....+.+.+.++. ..+.++++|.
T Consensus 82 ~~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~v~~sS 147 (254)
T PRK12746 82 LQIRVGTSEIDILVNNAGIGTQGTIENTTEEIFDEIMAVNIKAPFFLIQQTLPLLRAEGRVINISS 147 (254)
T ss_pred hccccCCCCccEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHhhcCCEEEEECC
Confidence 26899999998643211 111 2345567776666666666543 2345555543
No 247
>PTZ00142 6-phosphogluconate dehydrogenase; Provisional
Probab=97.19 E-value=0.0022 Score=63.31 Aligned_cols=97 Identities=18% Similarity=0.208 Sum_probs=64.0
Q ss_pred CEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchhHHhhhhcccC--CceEEEEecCCCHHhhhC---CCCEEEEc
Q 022947 47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDT--NAVVRGFLGQQQLEDALT---GMDIVIIP 121 (289)
Q Consensus 47 ~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g~~~DL~~~~~--~~~v~~~~~t~d~~eal~---~aDiVIit 121 (289)
.+|+|||. |.+|+++|..|+..|+ +|.++|+++.. +.++..... ...+.. +.++++.++ ++|+||++
T Consensus 2 ~~IgvIGL-G~MG~~lA~nL~~~G~--~V~v~dr~~~~--~~~l~~~~~~~g~~i~~---~~s~~e~v~~l~~~d~Iil~ 73 (470)
T PTZ00142 2 SDIGLIGL-AVMGQNLALNIASRGF--KISVYNRTYEK--TEEFVKKAKEGNTRVKG---YHTLEELVNSLKKPRKVILL 73 (470)
T ss_pred CEEEEEeE-hHHHHHHHHHHHHCCC--eEEEEeCCHHH--HHHHHHhhhhcCCccee---cCCHHHHHhcCCCCCEEEEE
Confidence 48999998 9999999999999998 99999997622 122222110 111222 346666665 58988887
Q ss_pred CCCCCCCCCchhhHHHhhHHHHHHHHHHHHHh-CCCcEEEEecCCC
Q 022947 122 AGVPRKPGMTRDDLFNINAGIVKTLCEGIAKC-CPKAIVNLISNPV 166 (289)
Q Consensus 122 ag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~-~p~aiviv~tNPv 166 (289)
.- +-+.++++++.+..+ .|+.+|+-.+|-.
T Consensus 74 v~---------------~~~~v~~vi~~l~~~L~~g~iIID~gn~~ 104 (470)
T PTZ00142 74 IK---------------AGEAVDETIDNLLPLLEKGDIIIDGGNEW 104 (470)
T ss_pred eC---------------ChHHHHHHHHHHHhhCCCCCEEEECCCCC
Confidence 42 224455555666654 3778888887753
No 248
>PRK07832 short chain dehydrogenase; Provisional
Probab=97.19 E-value=0.025 Score=50.95 Aligned_cols=118 Identities=20% Similarity=0.184 Sum_probs=65.2
Q ss_pred CEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCc--hhHHhhhhcccCCceEEEEecCCCH----------HhhhCC
Q 022947 47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTNAVVRGFLGQQQL----------EDALTG 114 (289)
Q Consensus 47 ~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~--~g~~~DL~~~~~~~~v~~~~~t~d~----------~eal~~ 114 (289)
+++.|+||+|.+|..++..|+..|. +|+++++++. .....++.............+-.+. .+.+..
T Consensus 1 k~vlItGas~giG~~la~~la~~G~--~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 78 (272)
T PRK07832 1 KRCFVTGAASGIGRATALRLAAQGA--ELFLTDRDADGLAQTVADARALGGTVPEHRALDISDYDAVAAFAADIHAAHGS 78 (272)
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcCCCcceEEEeeCCCHHHHHHHHHHHHHhcCC
Confidence 3799999999999999999999997 7999998752 2222233221111100000011111 122356
Q ss_pred CCEEEEcCCCCCCC---CCch---hhHHHhhHHHHHHHHHH----HHHhCCCcEEEEecCCC
Q 022947 115 MDIVIIPAGVPRKP---GMTR---DDLFNINAGIVKTLCEG----IAKCCPKAIVNLISNPV 166 (289)
Q Consensus 115 aDiVIitag~~~~~---g~~r---~d~~~~N~~i~~~i~~~----i~~~~p~aiviv~tNPv 166 (289)
.|++|+++|..... ..+. ...+..|+.....+++. +.+....+.|++++...
T Consensus 79 id~lv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~~~g~ii~isS~~ 140 (272)
T PRK07832 79 MDVVMNIAGISAWGTVDRLTHEQWRRMVDVNLMGPIHVIETFVPPMVAAGRGGHLVNVSSAA 140 (272)
T ss_pred CCEEEECCCCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEEcccc
Confidence 89999999864321 1121 23455666554444444 33333345666666543
No 249
>KOG2305 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism]
Probab=97.18 E-value=0.001 Score=59.33 Aligned_cols=108 Identities=18% Similarity=0.238 Sum_probs=72.2
Q ss_pred CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCc------hh---HHhhhhccc-CCceEE------EEecCCCHH
Q 022947 46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT------PG---VTADISHMD-TNAVVR------GFLGQQQLE 109 (289)
Q Consensus 46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~------~g---~~~DL~~~~-~~~~v~------~~~~t~d~~ 109 (289)
.-||+|+|. |.+|++.|.+++..|+ +|.|||+.+. +. ...+|+... ...+++ .++++++++
T Consensus 3 ~~ki~ivgS-gl~g~~WAmlFAs~Gy--qVqlYDI~e~Ql~~ALen~~Kel~~Lee~g~lrGnlsa~eqla~is~t~~l~ 79 (313)
T KOG2305|consen 3 FGKIAIVGS-GLVGSSWAMLFASSGY--QVQLYDILEKQLQTALENVEKELRKLEEHGLLRGNLSADEQLALISGTTSLN 79 (313)
T ss_pred ccceeEeec-ccccchHHHHHhccCc--eEEEeeccHHHHHHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhCCccHH
Confidence 348999996 9999999999999999 9999999871 11 122333321 111221 245678888
Q ss_pred hhhCCCCEEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhC-CCcEEEEecCCCcccHHH
Q 022947 110 DALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCC-PKAIVNLISNPVNSTVPI 172 (289)
Q Consensus 110 eal~~aDiVIitag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~-p~aiviv~tNPvd~~t~~ 172 (289)
|..++|=.|=.|+ .+.+...+.+.+++.+.. |+.++ .|..+..|...
T Consensus 80 E~vk~Ai~iQEcv--------------pE~L~lkk~ly~qlD~i~d~~tIl--aSSTSt~mpS~ 127 (313)
T KOG2305|consen 80 ELVKGAIHIQECV--------------PEDLNLKKQLYKQLDEIADPTTIL--ASSTSTFMPSK 127 (313)
T ss_pred HHHhhhhhHHhhc--------------hHhhHHHHHHHHHHHHhcCCceEE--eccccccChHH
Confidence 9888885544442 345667788888898876 55544 56666666543
No 250
>COG4221 Short-chain alcohol dehydrogenase of unknown specificity [General function prediction only]
Probab=97.18 E-value=0.018 Score=51.97 Aligned_cols=133 Identities=14% Similarity=0.130 Sum_probs=84.6
Q ss_pred CEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCC--chhHHhhhhcccCCceEEEEecC-------CCHHhhhCCCCE
Q 022947 47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTNAVVRGFLGQ-------QQLEDALTGMDI 117 (289)
Q Consensus 47 ~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~--~~g~~~DL~~~~~~~~v~~~~~t-------~d~~eal~~aDi 117 (289)
+-+.|+|||+-+|..+|..|+..|. .|+|..++. .+..+.++.+....+......+. ..+.+.+.+.|+
T Consensus 7 kv~lITGASSGiG~A~A~~l~~~G~--~vvl~aRR~drL~~la~~~~~~~~~~~~~DVtD~~~~~~~i~~~~~~~g~iDi 84 (246)
T COG4221 7 KVALITGASSGIGEATARALAEAGA--KVVLAARREERLEALADEIGAGAALALALDVTDRAAVEAAIEALPEEFGRIDI 84 (246)
T ss_pred cEEEEecCcchHHHHHHHHHHHCCC--eEEEEeccHHHHHHHHHhhccCceEEEeeccCCHHHHHHHHHHHHHhhCcccE
Confidence 3578999999999999999999998 999999977 44555555531111111111111 123345678999
Q ss_pred EEEcCCCCCCCC------CchhhHHHhhHHHHHHHHHHHHHh---CCCcEEEEecCCCcccHHHHHHHHHHhCCCCCCcE
Q 022947 118 VIIPAGVPRKPG------MTRDDLFNINAGIVKTLCEGIAKC---CPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRL 188 (289)
Q Consensus 118 VIitag~~~~~g------~~r~d~~~~N~~i~~~i~~~i~~~---~p~aiviv~tNPvd~~t~~~~~~~~~~~~~~~~kv 188 (289)
+|..||..+... ++..+++..|++.+....+.+-.. ...+.||+++.=...- .||...+
T Consensus 85 LvNNAGl~~g~~~~~~~~~dw~~Mid~Ni~G~l~~~~avLP~m~~r~~G~IiN~~SiAG~~------------~y~~~~v 152 (246)
T COG4221 85 LVNNAGLALGDPLDEADLDDWDRMIDTNVKGLLNGTRAVLPGMVERKSGHIINLGSIAGRY------------PYPGGAV 152 (246)
T ss_pred EEecCCCCcCChhhhCCHHHHHHHHHHHHHHHHHHHHHhhhHHHhcCCceEEEeccccccc------------cCCCCcc
Confidence 999999754321 124457888988766555544322 2466888877544322 3777788
Q ss_pred EEeee
Q 022947 189 LGVTM 193 (289)
Q Consensus 189 iG~t~ 193 (289)
++-|.
T Consensus 153 Y~ATK 157 (246)
T COG4221 153 YGATK 157 (246)
T ss_pred chhhH
Confidence 87653
No 251
>PRK12481 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=97.18 E-value=0.0055 Score=54.77 Aligned_cols=116 Identities=20% Similarity=0.288 Sum_probs=65.7
Q ss_pred CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchhHHhhhhcccCCceEEEE----ecCCCHHhh-------hCC
Q 022947 46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGF----LGQQQLEDA-------LTG 114 (289)
Q Consensus 46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g~~~DL~~~~~~~~v~~~----~~t~d~~ea-------l~~ 114 (289)
.+++.|+||+|.+|..++..|+..|. +|++++.++.......+.... .++..+ ....+.++. +..
T Consensus 8 ~k~~lItGas~gIG~aia~~l~~~G~--~vv~~~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~~g~ 83 (251)
T PRK12481 8 GKVAIITGCNTGLGQGMAIGLAKAGA--DIVGVGVAEAPETQAQVEALG--RKFHFITADLIQQKDIDSIVSQAVEVMGH 83 (251)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCC--EEEEecCchHHHHHHHHHHcC--CeEEEEEeCCCCHHHHHHHHHHHHHHcCC
Confidence 35799999999999999999999998 899998754221111222111 122111 111122222 245
Q ss_pred CCEEEEcCCCCCCC---CCc---hhhHHHhhHH----HHHHHHHHHHHhCCCcEEEEecCC
Q 022947 115 MDIVIIPAGVPRKP---GMT---RDDLFNINAG----IVKTLCEGIAKCCPKAIVNLISNP 165 (289)
Q Consensus 115 aDiVIitag~~~~~---g~~---r~d~~~~N~~----i~~~i~~~i~~~~p~aiviv~tNP 165 (289)
.|++|.++|..... ..+ -...+..|+. +.+.+.+.+.+....+.|++++..
T Consensus 84 iD~lv~~ag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~~~~~~~~g~ii~isS~ 144 (251)
T PRK12481 84 IDILINNAGIIRRQDLLEFGNKDWDDVININQKTVFFLSQAVAKQFVKQGNGGKIINIASM 144 (251)
T ss_pred CCEEEECCCcCCCCCcccCCHHHHHHHheeCcHHHHHHHHHHHHHHHHcCCCCEEEEeCCh
Confidence 79999999874321 111 1234555654 345555555544434667666543
No 252
>PRK06124 gluconate 5-dehydrogenase; Provisional
Probab=97.17 E-value=0.0049 Score=54.80 Aligned_cols=118 Identities=14% Similarity=0.130 Sum_probs=66.7
Q ss_pred CCCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCc--hhHHhhhhcccCCceEEEE----ecCCCHHhhh------
Q 022947 45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTNAVVRGF----LGQQQLEDAL------ 112 (289)
Q Consensus 45 ~~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~--~g~~~DL~~~~~~~~v~~~----~~t~d~~eal------ 112 (289)
+.++|.|+||+|.+|..++..|+..|. +|+++|+++. .....++.... .++..+ ....++..++
T Consensus 10 ~~k~ilItGas~~IG~~la~~l~~~G~--~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~ 85 (256)
T PRK06124 10 AGQVALVTGSARGLGFEIARALAGAGA--HVLVNGRNAATLEAAVAALRAAG--GAAEALAFDIADEEAVAAAFARIDAE 85 (256)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHcCC--eEEEEeCCHHHHHHHHHHHHhcC--CceEEEEccCCCHHHHHHHHHHHHHh
Confidence 356899999999999999999999997 8999998762 22222332211 111111 1111222222
Q ss_pred -CCCCEEEEcCCCCCCC---CCch---hhHHHhhHHHHHHHHHHHHHh---CCCcEEEEecCCC
Q 022947 113 -TGMDIVIIPAGVPRKP---GMTR---DDLFNINAGIVKTLCEGIAKC---CPKAIVNLISNPV 166 (289)
Q Consensus 113 -~~aDiVIitag~~~~~---g~~r---~d~~~~N~~i~~~i~~~i~~~---~p~aiviv~tNPv 166 (289)
...|++|.++|..... ..+. .+.+..|+.....+.+.+.+. ...+.+++++...
T Consensus 86 ~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~~ss~~ 149 (256)
T PRK06124 86 HGRLDILVNNVGARDRRPLAELDDAAIRALLETDLVAPILLSRLAAQRMKRQGYGRIIAITSIA 149 (256)
T ss_pred cCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEEeech
Confidence 3569999999864221 1111 234566666555555444321 2345666666543
No 253
>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]
Probab=97.17 E-value=0.0022 Score=59.99 Aligned_cols=120 Identities=22% Similarity=0.268 Sum_probs=73.2
Q ss_pred CEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCc-hhH---HhhhhcccCCceEEEEecCCCHHhhhCCCCEEEEcC
Q 022947 47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT-PGV---TADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPA 122 (289)
Q Consensus 47 ~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~-~g~---~~DL~~~~~~~~v~~~~~t~d~~eal~~aDiVIita 122 (289)
|||+|+|+ |.||+.++..|.+.|. +|.++-+.+. +.. -+.+.+........... +.+ .+....+|+||++.
T Consensus 1 mkI~IlGa-GAvG~l~g~~L~~~g~--~V~~~~R~~~~~~l~~~GL~i~~~~~~~~~~~~~-~~~-~~~~~~~Dlviv~v 75 (307)
T COG1893 1 MKILILGA-GAIGSLLGARLAKAGH--DVTLLVRSRRLEALKKKGLRIEDEGGNFTTPVVA-ATD-AEALGPADLVIVTV 75 (307)
T ss_pred CeEEEECC-cHHHHHHHHHHHhCCC--eEEEEecHHHHHHHHhCCeEEecCCCcccccccc-ccC-hhhcCCCCEEEEEe
Confidence 69999998 9999999999999994 6677665541 111 11222211100111111 122 46778999999985
Q ss_pred CCCCCCCCchhhHHHhhHHHHHHHHHHHHHhC-CCcEEEEecCCCcccHHHHHHHHHHhCCCCCCcEE-Eeeec
Q 022947 123 GVPRKPGMTRDDLFNINAGIVKTLCEGIAKCC-PKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLL-GVTML 194 (289)
Q Consensus 123 g~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~-p~aiviv~tNPvd~~t~~~~~~~~~~~~~~~~kvi-G~t~l 194 (289)
-. --..+..+.+..+. |+++|+..=|=++.. |.+++ .+++++|+ |+|..
T Consensus 76 Ka----------------~q~~~al~~l~~~~~~~t~vl~lqNG~g~~-----e~l~~--~~~~~~il~G~~~~ 126 (307)
T COG1893 76 KA----------------YQLEEALPSLAPLLGPNTVVLFLQNGLGHE-----EELRK--ILPKETVLGGVTTH 126 (307)
T ss_pred cc----------------ccHHHHHHHhhhcCCCCcEEEEEeCCCcHH-----HHHHH--hCCcceEEEEEeee
Confidence 21 12455666777765 777888888888775 33443 35666555 56543
No 254
>PRK06398 aldose dehydrogenase; Validated
Probab=97.16 E-value=0.0036 Score=56.20 Aligned_cols=111 Identities=18% Similarity=0.187 Sum_probs=62.7
Q ss_pred CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchhH-----HhhhhcccCCceEEEEecCCCHHhhhCCCCEEEE
Q 022947 46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGV-----TADISHMDTNAVVRGFLGQQQLEDALTGMDIVII 120 (289)
Q Consensus 46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g~-----~~DL~~~~~~~~v~~~~~t~d~~eal~~aDiVIi 120 (289)
.+++.|+|++|.+|..++..|+..|. +|+++|+++.... ..|+.+.. .+... .....+.+...|++|.
T Consensus 6 gk~vlItGas~gIG~~ia~~l~~~G~--~Vi~~~r~~~~~~~~~~~~~D~~~~~---~i~~~--~~~~~~~~~~id~li~ 78 (258)
T PRK06398 6 DKVAIVTGGSQGIGKAVVNRLKEEGS--NVINFDIKEPSYNDVDYFKVDVSNKE---QVIKG--IDYVISKYGRIDILVN 78 (258)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCC--eEEEEeCCccccCceEEEEccCCCHH---HHHHH--HHHHHHHcCCCCEEEE
Confidence 35899999999999999999999997 8999998752111 11221110 00000 0011122357899999
Q ss_pred cCCCCCCC---CCch---hhHHHhhHHHHH----HHHHHHHHhCCCcEEEEecC
Q 022947 121 PAGVPRKP---GMTR---DDLFNINAGIVK----TLCEGIAKCCPKAIVNLISN 164 (289)
Q Consensus 121 tag~~~~~---g~~r---~d~~~~N~~i~~----~i~~~i~~~~p~aiviv~tN 164 (289)
++|..... ..+. .+.+..|+.... .+.+.+.+. ..+.|+++|.
T Consensus 79 ~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~-~~g~iv~isS 131 (258)
T PRK06398 79 NAGIESYGAIHAVEEDEWDRIINVNVNGIFLMSKYTIPYMLKQ-DKGVIINIAS 131 (258)
T ss_pred CCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHc-CCeEEEEeCc
Confidence 99874321 1111 233566655444 444444432 3456666554
No 255
>PRK07074 short chain dehydrogenase; Provisional
Probab=97.15 E-value=0.005 Score=54.78 Aligned_cols=34 Identities=35% Similarity=0.322 Sum_probs=30.8
Q ss_pred CEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCC
Q 022947 47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN 82 (289)
Q Consensus 47 ~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~ 82 (289)
+++.|+||+|.+|..++..|+..|. +|+++|++.
T Consensus 3 k~ilItGat~~iG~~la~~L~~~g~--~v~~~~r~~ 36 (257)
T PRK07074 3 RTALVTGAAGGIGQALARRFLAAGD--RVLALDIDA 36 (257)
T ss_pred CEEEEECCcchHHHHHHHHHHHCCC--EEEEEeCCH
Confidence 4799999999999999999999887 899999875
No 256
>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=97.14 E-value=0.004 Score=57.73 Aligned_cols=64 Identities=16% Similarity=0.252 Sum_probs=44.1
Q ss_pred CEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchhHHhhhhcccCCceEEEEecCCCHHhhhCC---CCEEEEcC
Q 022947 47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTG---MDIVIIPA 122 (289)
Q Consensus 47 ~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~eal~~---aDiVIita 122 (289)
|||+|||. |.+|+.++..|+..|+ +|.++|+++.. ..++.... +.. ..++++.++. +|+||++.
T Consensus 1 m~Ig~IGl-G~MG~~mA~~L~~~g~--~v~v~dr~~~~--~~~~~~~g----~~~---~~~~~e~~~~~~~~dvvi~~v 67 (301)
T PRK09599 1 MQLGMIGL-GRMGGNMARRLLRGGH--EVVGYDRNPEA--VEALAEEG----ATG---ADSLEELVAKLPAPRVVWLMV 67 (301)
T ss_pred CEEEEEcc-cHHHHHHHHHHHHCCC--eEEEEECCHHH--HHHHHHCC----Cee---cCCHHHHHhhcCCCCEEEEEe
Confidence 58999998 9999999999999987 89999987622 12222211 111 2244455554 69999874
No 257
>PRK09291 short chain dehydrogenase; Provisional
Probab=97.14 E-value=0.0079 Score=53.36 Aligned_cols=77 Identities=13% Similarity=0.130 Sum_probs=47.4
Q ss_pred CEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchh-HHhhh-hcccCCceEE--EEecCCCHHhhhC-CCCEEEEc
Q 022947 47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPG-VTADI-SHMDTNAVVR--GFLGQQQLEDALT-GMDIVIIP 121 (289)
Q Consensus 47 ~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g-~~~DL-~~~~~~~~v~--~~~~t~d~~eal~-~aDiVIit 121 (289)
++|.|+||+|.+|..++..|+..|. +|++.+++.... ...+. ........+. .+....++..++. +.|+||++
T Consensus 3 ~~vlVtGasg~iG~~ia~~l~~~G~--~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~id~vi~~ 80 (257)
T PRK09291 3 KTILITGAGSGFGREVALRLARKGH--NVIAGVQIAPQVTALRAEAARRGLALRVEKLDLTDAIDRAQAAEWDVDVLLNN 80 (257)
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcCCcceEEEeeCCCHHHHHHHhcCCCCEEEEC
Confidence 4799999999999999999999997 888888765211 11111 1111111111 1111123334444 89999999
Q ss_pred CCCC
Q 022947 122 AGVP 125 (289)
Q Consensus 122 ag~~ 125 (289)
+|..
T Consensus 81 ag~~ 84 (257)
T PRK09291 81 AGIG 84 (257)
T ss_pred CCcC
Confidence 9865
No 258
>PRK08264 short chain dehydrogenase; Validated
Probab=97.14 E-value=0.007 Score=53.13 Aligned_cols=113 Identities=15% Similarity=0.083 Sum_probs=63.9
Q ss_pred CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchhHHhhhhcccCCceEEE----EecCCCHHhhh---CCCCEE
Q 022947 46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRG----FLGQQQLEDAL---TGMDIV 118 (289)
Q Consensus 46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g~~~DL~~~~~~~~v~~----~~~t~d~~eal---~~aDiV 118 (289)
.++|.|+||+|.+|+.++..|+..|. .+|++++++..... + . ...+.. ....+++++.+ ...|+|
T Consensus 6 ~~~vlItGgsg~iG~~la~~l~~~G~-~~V~~~~r~~~~~~--~---~--~~~~~~~~~D~~~~~~~~~~~~~~~~id~v 77 (238)
T PRK08264 6 GKVVLVTGANRGIGRAFVEQLLARGA-AKVYAAARDPESVT--D---L--GPRVVPLQLDVTDPASVAAAAEAASDVTIL 77 (238)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCc-ccEEEEecChhhhh--h---c--CCceEEEEecCCCHHHHHHHHHhcCCCCEE
Confidence 35899999999999999999998884 37888988652111 1 0 011111 11112233333 358999
Q ss_pred EEcCCCCCCC----CCch---hhHHHhhHHHHHHHHHHHHHh---CCCcEEEEecCCC
Q 022947 119 IIPAGVPRKP----GMTR---DDLFNINAGIVKTLCEGIAKC---CPKAIVNLISNPV 166 (289)
Q Consensus 119 Iitag~~~~~----g~~r---~d~~~~N~~i~~~i~~~i~~~---~p~aiviv~tNPv 166 (289)
|.++|..... ..+. .+.+..|......+.+.+.+. ...+.++++|...
T Consensus 78 i~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~v~~sS~~ 135 (238)
T PRK08264 78 VNNAGIFRTGSLLLEGDEDALRAEMETNYFGPLAMARAFAPVLAANGGGAIVNVLSVL 135 (238)
T ss_pred EECCCcCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCEEEEEcChh
Confidence 9999873221 1111 223455665555555554432 2345566666543
No 259
>PRK08818 prephenate dehydrogenase; Provisional
Probab=97.14 E-value=0.0032 Score=60.31 Aligned_cols=55 Identities=25% Similarity=0.317 Sum_probs=43.0
Q ss_pred CCEEEEEcCCCccHHHHHHHHHhC-CCccEEEEEeCCCchhHHhhhhcccCCceEEEEecCCCHHhhhCCCCEEEEcC
Q 022947 46 GFKVAVLGAAGGIGQPLAMLMKIN-PLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPA 122 (289)
Q Consensus 46 ~~KI~IIGaaG~VGs~la~~L~~~-g~~~eI~LvD~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~eal~~aDiVIita 122 (289)
.+||+|||.+|.+|.+++..|... ++ +|+.+|.+ +. ...+.++.+++||+||+|.
T Consensus 4 ~~~I~IIGl~GliGgslA~alk~~~~~--~V~g~D~~----------d~----------~~~~~~~~v~~aDlVilav 59 (370)
T PRK08818 4 QPVVGIVGSAGAYGRWLARFLRTRMQL--EVIGHDPA----------DP----------GSLDPATLLQRADVLIFSA 59 (370)
T ss_pred CCEEEEECCCCHHHHHHHHHHHhcCCC--EEEEEcCC----------cc----------ccCCHHHHhcCCCEEEEeC
Confidence 459999998899999999999865 44 89999863 11 0124567899999999995
No 260
>TIGR02632 RhaD_aldol-ADH rhamnulose-1-phosphate aldolase/alcohol dehydrogenase.
Probab=97.13 E-value=0.011 Score=61.07 Aligned_cols=36 Identities=28% Similarity=0.246 Sum_probs=32.4
Q ss_pred CCCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCC
Q 022947 45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN 82 (289)
Q Consensus 45 ~~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~ 82 (289)
..++|.|+||+|.+|..++..|++.|. +|+++|++.
T Consensus 413 ~gkvvLVTGasggIG~aiA~~La~~Ga--~Vvi~~r~~ 448 (676)
T TIGR02632 413 ARRVAFVTGGAGGIGRETARRLAAEGA--HVVLADLNL 448 (676)
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHhCCC--EEEEEeCCH
Confidence 356899999999999999999999997 999999876
No 261
>PRK06138 short chain dehydrogenase; Provisional
Probab=97.13 E-value=0.013 Score=51.70 Aligned_cols=35 Identities=29% Similarity=0.283 Sum_probs=31.5
Q ss_pred CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCC
Q 022947 46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN 82 (289)
Q Consensus 46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~ 82 (289)
.+++.|+||+|.+|+.++..|+..|. +|++++++.
T Consensus 5 ~k~~lItG~sg~iG~~la~~l~~~G~--~v~~~~r~~ 39 (252)
T PRK06138 5 GRVAIVTGAGSGIGRATAKLFAREGA--RVVVADRDA 39 (252)
T ss_pred CcEEEEeCCCchHHHHHHHHHHHCCC--eEEEecCCH
Confidence 45899999999999999999999987 899999875
No 262
>PRK05854 short chain dehydrogenase; Provisional
Probab=97.13 E-value=0.0066 Score=56.41 Aligned_cols=115 Identities=22% Similarity=0.145 Sum_probs=64.5
Q ss_pred CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCc--hhHHhhhhcccCCceEEEEe-cCCCH---H-------hhh
Q 022947 46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTNAVVRGFL-GQQQL---E-------DAL 112 (289)
Q Consensus 46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~--~g~~~DL~~~~~~~~v~~~~-~t~d~---~-------eal 112 (289)
.+++.|+||+|.+|..++..|+..|. +|++.+++.. .....++........+..+. +-.|+ + +..
T Consensus 14 gk~~lITGas~GIG~~~a~~La~~G~--~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dl~d~~sv~~~~~~~~~~~ 91 (313)
T PRK05854 14 GKRAVVTGASDGLGLGLARRLAAAGA--EVILPVRNRAKGEAAVAAIRTAVPDAKLSLRALDLSSLASVAALGEQLRAEG 91 (313)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHHhCCCCceEEEEecCCCHHHHHHHHHHHHHhC
Confidence 45899999999999999999999997 8999998762 22222332211111222111 11121 1 112
Q ss_pred CCCCEEEEcCCCCCCCC--Cc---hhhHHHhhHH----HHHHHHHHHHHhCCCcEEEEecC
Q 022947 113 TGMDIVIIPAGVPRKPG--MT---RDDLFNINAG----IVKTLCEGIAKCCPKAIVNLISN 164 (289)
Q Consensus 113 ~~aDiVIitag~~~~~g--~~---r~d~~~~N~~----i~~~i~~~i~~~~p~aiviv~tN 164 (289)
...|++|..||....+. .+ -...+..|.. +.+.+.+.+++. .+.|+++|.
T Consensus 92 ~~iD~li~nAG~~~~~~~~~t~~~~e~~~~vN~~g~~~l~~~llp~l~~~--~~riv~vsS 150 (313)
T PRK05854 92 RPIHLLINNAGVMTPPERQTTADGFELQFGTNHLGHFALTAHLLPLLRAG--RARVTSQSS 150 (313)
T ss_pred CCccEEEECCccccCCccccCcccHHHHhhhhhHHHHHHHHHHHHHHHhC--CCCeEEEec
Confidence 45899999998643211 11 1223445544 355555555443 345555554
No 263
>PLN02712 arogenate dehydrogenase
Probab=97.12 E-value=0.003 Score=64.97 Aligned_cols=91 Identities=12% Similarity=0.092 Sum_probs=58.6
Q ss_pred CCCCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchhHHhhhhcccCCceEEEEecCCCHHhhh-CCCCEEEEcC
Q 022947 44 SPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDAL-TGMDIVIIPA 122 (289)
Q Consensus 44 ~~~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~eal-~~aDiVIita 122 (289)
.+++||+|||. |.+|..++..|...|+ +|+.+|++.....+.++ .+.. ..++.+.+ +++|+||++.
T Consensus 50 ~~~~kIgIIG~-G~mG~slA~~L~~~G~--~V~~~dr~~~~~~A~~~-------Gv~~---~~d~~e~~~~~aDvViLav 116 (667)
T PLN02712 50 TTQLKIAIIGF-GNYGQFLAKTLISQGH--TVLAHSRSDHSLAARSL-------GVSF---FLDPHDLCERHPDVILLCT 116 (667)
T ss_pred CCCCEEEEEcc-CHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHc-------CCEE---eCCHHHHhhcCCCEEEEcC
Confidence 44689999998 9999999999998886 89999987422112211 1111 23455544 5799999984
Q ss_pred CCCCCCCCchhhHHHhhHHHHHHHHHHHH-Hh-CCCcEEEEec
Q 022947 123 GVPRKPGMTRDDLFNINAGIVKTLCEGIA-KC-CPKAIVNLIS 163 (289)
Q Consensus 123 g~~~~~g~~r~d~~~~N~~i~~~i~~~i~-~~-~p~aiviv~t 163 (289)
- ...+.++++.+. .+ .|+++|+-++
T Consensus 117 P----------------~~~~~~vl~~l~~~~l~~g~iVvDv~ 143 (667)
T PLN02712 117 S----------------IISTENVLKSLPLQRLKRNTLFVDVL 143 (667)
T ss_pred C----------------HHHHHHHHHhhhhhcCCCCeEEEECC
Confidence 2 123455555554 23 4677776665
No 264
>PRK13243 glyoxylate reductase; Reviewed
Probab=97.12 E-value=0.0026 Score=60.08 Aligned_cols=97 Identities=21% Similarity=0.291 Sum_probs=61.9
Q ss_pred CCCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchhHHhhhhcccCCceEEEEecCCCHHhhhCCCCEEEEcCCC
Q 022947 45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGV 124 (289)
Q Consensus 45 ~~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~eal~~aDiVIitag~ 124 (289)
..++|+|||. |.+|+.+|..|...|. +|..+|+........ .. . .. . .++++.+++||+|+++...
T Consensus 149 ~gktvgIiG~-G~IG~~vA~~l~~~G~--~V~~~d~~~~~~~~~--~~-~----~~-~---~~l~ell~~aDiV~l~lP~ 214 (333)
T PRK13243 149 YGKTIGIIGF-GRIGQAVARRAKGFGM--RILYYSRTRKPEAEK--EL-G----AE-Y---RPLEELLRESDFVSLHVPL 214 (333)
T ss_pred CCCEEEEECc-CHHHHHHHHHHHHCCC--EEEEECCCCChhhHH--Hc-C----CE-e---cCHHHHHhhCCEEEEeCCC
Confidence 3569999998 9999999999988887 899999864211111 11 0 11 1 2577889999999998532
Q ss_pred CCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEec--CCCcc
Q 022947 125 PRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLIS--NPVNS 168 (289)
Q Consensus 125 ~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~aiviv~t--NPvd~ 168 (289)
. + + +..++.+ +.+....|.+++|+++ ..+|.
T Consensus 215 t--~-~--------T~~~i~~--~~~~~mk~ga~lIN~aRg~~vd~ 247 (333)
T PRK13243 215 T--K-E--------TYHMINE--ERLKLMKPTAILVNTARGKVVDT 247 (333)
T ss_pred C--h-H--------HhhccCH--HHHhcCCCCeEEEECcCchhcCH
Confidence 1 1 1 1111211 2344445889999985 44544
No 265
>PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional
Probab=97.12 E-value=0.0013 Score=61.05 Aligned_cols=64 Identities=20% Similarity=0.302 Sum_probs=47.2
Q ss_pred CEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchhHHhhhhcccCCceEEEEecCCCHHhhhCCCCEEEEcC
Q 022947 47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPA 122 (289)
Q Consensus 47 ~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~eal~~aDiVIita 122 (289)
+||+|||. |.+|..++..|+..|+ +|.++|+++.. ..++.... .. ...++.+++++||+||++.
T Consensus 2 ~~Ig~IGl-G~mG~~mA~~l~~~G~--~V~v~d~~~~~--~~~~~~~g----~~---~~~s~~~~~~~aDvVi~~v 65 (296)
T PRK15461 2 AAIAFIGL-GQMGSPMASNLLKQGH--QLQVFDVNPQA--VDALVDKG----AT---PAASPAQAAAGAEFVITML 65 (296)
T ss_pred CeEEEEee-CHHHHHHHHHHHHCCC--eEEEEcCCHHH--HHHHHHcC----Cc---ccCCHHHHHhcCCEEEEec
Confidence 48999998 9999999999999997 89999987622 12222211 11 1235668889999999985
No 266
>PRK08642 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=97.12 E-value=0.0071 Score=53.44 Aligned_cols=33 Identities=18% Similarity=0.166 Sum_probs=28.6
Q ss_pred CEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCC
Q 022947 47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVV 81 (289)
Q Consensus 47 ~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~ 81 (289)
++|.|+||+|.+|..++..|+..|. +|++.+.+
T Consensus 6 k~ilItGas~gIG~~la~~l~~~G~--~vv~~~~~ 38 (253)
T PRK08642 6 QTVLVTGGSRGLGAAIARAFAREGA--RVVVNYHQ 38 (253)
T ss_pred CEEEEeCCCCcHHHHHHHHHHHCCC--eEEEEcCC
Confidence 5899999999999999999999997 78776543
No 267
>PRK05650 short chain dehydrogenase; Provisional
Probab=97.12 E-value=0.0055 Score=55.14 Aligned_cols=113 Identities=19% Similarity=0.151 Sum_probs=63.5
Q ss_pred CEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCc--hhHHhhhhcccCCceEEEEe-cCCC---HHhh-------hC
Q 022947 47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTNAVVRGFL-GQQQ---LEDA-------LT 113 (289)
Q Consensus 47 ~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~--~g~~~DL~~~~~~~~v~~~~-~t~d---~~ea-------l~ 113 (289)
++|.|+||+|.+|..++..|+..|. +|++.|++.. .....++.... .++..+. +..+ ..+. +.
T Consensus 1 ~~vlVtGasggIG~~la~~l~~~g~--~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~D~~~~~~~~~~~~~i~~~~~ 76 (270)
T PRK05650 1 NRVMITGAASGLGRAIALRWAREGW--RLALADVNEEGGEETLKLLREAG--GDGFYQRCDVRDYSQLTALAQACEEKWG 76 (270)
T ss_pred CEEEEecCCChHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC--CceEEEEccCCCHHHHHHHHHHHHHHcC
Confidence 4799999999999999999999997 8999998752 22222232221 1121111 1112 2222 24
Q ss_pred CCCEEEEcCCCCCCC---CCch---hhHHHhhHH----HHHHHHHHHHHhCCCcEEEEecC
Q 022947 114 GMDIVIIPAGVPRKP---GMTR---DDLFNINAG----IVKTLCEGIAKCCPKAIVNLISN 164 (289)
Q Consensus 114 ~aDiVIitag~~~~~---g~~r---~d~~~~N~~----i~~~i~~~i~~~~p~aiviv~tN 164 (289)
..|++|.++|..... ..+. ...+..|+. ..+.+.+.+++.. .+.++++|.
T Consensus 77 ~id~lI~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~-~~~iv~vsS 136 (270)
T PRK05650 77 GIDVIVNNAGVASGGFFEELSLEDWDWQIAINLMGVVKGCKAFLPLFKRQK-SGRIVNIAS 136 (270)
T ss_pred CCCEEEECCCCCCCCCcccCCHHHHHHHHHHccHHHHHHHHHHHHHHHhCC-CCEEEEECC
Confidence 689999999864321 1111 223455644 3444555555543 345555554
No 268
>TIGR01830 3oxo_ACP_reduc 3-oxoacyl-(acyl-carrier-protein) reductase. This model represents 3-oxoacyl-[ACP] reductase, also called 3-ketoacyl-acyl carrier protein reductase, an enzyme of fatty acid biosynthesis.
Probab=97.11 E-value=0.0066 Score=52.98 Aligned_cols=114 Identities=18% Similarity=0.245 Sum_probs=65.7
Q ss_pred EEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCC-c--hhHHhhhhcccCCceEEEE----ecCCCHHhhh-------CC
Q 022947 49 VAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-T--PGVTADISHMDTNAVVRGF----LGQQQLEDAL-------TG 114 (289)
Q Consensus 49 I~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~-~--~g~~~DL~~~~~~~~v~~~----~~t~d~~eal-------~~ 114 (289)
|.|+|++|.+|+.++..|+++|+ +|++++.+. . .....++.+.. .++..+ ....++++.+ ..
T Consensus 1 vlItG~~g~iG~~la~~l~~~G~--~v~~~~r~~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 76 (239)
T TIGR01830 1 ALVTGASRGIGRAIALKLAKEGA--KVIITYRSSEEGAEEVVEELKAYG--VKALGVVCDVSDREDVKAVVEEIEEELGP 76 (239)
T ss_pred CEEECCCcHHHHHHHHHHHHCCC--EEEEEeCCchhHHHHHHHHHHhcC--CceEEEEecCCCHHHHHHHHHHHHHHhCC
Confidence 46899999999999999999997 899998764 1 12222332221 112111 1111222223 34
Q ss_pred CCEEEEcCCCCCCC---C---CchhhHHHhhHHHHHHHHHHHHHhC---CCcEEEEecCCC
Q 022947 115 MDIVIIPAGVPRKP---G---MTRDDLFNINAGIVKTLCEGIAKCC---PKAIVNLISNPV 166 (289)
Q Consensus 115 aDiVIitag~~~~~---g---~~r~d~~~~N~~i~~~i~~~i~~~~---p~aiviv~tNPv 166 (289)
.|+||+++|..... + ....+.+..|+.....+.+.+.++. ..+.++++|...
T Consensus 77 id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~v~~sS~~ 137 (239)
T TIGR01830 77 IDILVNNAGITRDNLLMRMKEEDWDAVIDTNLTGVFNLTQAVLRIMIKQRSGRIINISSVV 137 (239)
T ss_pred CCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCeEEEEECCcc
Confidence 69999999864211 1 1123456677777776766665542 234566655543
No 269
>PRK06197 short chain dehydrogenase; Provisional
Probab=97.11 E-value=0.008 Score=55.33 Aligned_cols=116 Identities=22% Similarity=0.133 Sum_probs=65.9
Q ss_pred CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchh--HHhhhhcccCCceEEEEe-cCCC---HHhh-------h
Q 022947 46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPG--VTADISHMDTNAVVRGFL-GQQQ---LEDA-------L 112 (289)
Q Consensus 46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g--~~~DL~~~~~~~~v~~~~-~t~d---~~ea-------l 112 (289)
.++|.|+||+|.+|..++..|+..|. +|++++++.... ...++........+..+. +-.| .++. +
T Consensus 16 ~k~vlItGas~gIG~~~a~~l~~~G~--~vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~d~~~v~~~~~~~~~~~ 93 (306)
T PRK06197 16 GRVAVVTGANTGLGYETAAALAAKGA--HVVLAVRNLDKGKAAAARITAATPGADVTLQELDLTSLASVRAAADALRAAY 93 (306)
T ss_pred CCEEEEcCCCCcHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHHhCCCCceEEEECCCCCHHHHHHHHHHHHhhC
Confidence 35899999999999999999999997 899998875211 122232111011222211 1112 1111 2
Q ss_pred CCCCEEEEcCCCCCCCC-C---chhhHHHhhHHH----HHHHHHHHHHhCCCcEEEEecC
Q 022947 113 TGMDIVIIPAGVPRKPG-M---TRDDLFNINAGI----VKTLCEGIAKCCPKAIVNLISN 164 (289)
Q Consensus 113 ~~aDiVIitag~~~~~g-~---~r~d~~~~N~~i----~~~i~~~i~~~~p~aiviv~tN 164 (289)
...|++|++||....+. . .-...+..|... .+.+.+.+++.. .+.|+++|.
T Consensus 94 ~~iD~li~nAg~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~ll~~l~~~~-~~~iV~vSS 152 (306)
T PRK06197 94 PRIDLLINNAGVMYTPKQTTADGFELQFGTNHLGHFALTGLLLDRLLPVP-GSRVVTVSS 152 (306)
T ss_pred CCCCEEEECCccccCCCccCCCCcchhhhhhhHHHHHHHHHHHHHHhhCC-CCEEEEECC
Confidence 36899999998642211 1 112334556554 666666666543 345666553
No 270
>PRK08339 short chain dehydrogenase; Provisional
Probab=97.11 E-value=0.04 Score=49.59 Aligned_cols=116 Identities=15% Similarity=0.146 Sum_probs=66.6
Q ss_pred CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCc--hhHHhhhhcccCCceEEEE----ecCCCHHhhh------C
Q 022947 46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTNAVVRGF----LGQQQLEDAL------T 113 (289)
Q Consensus 46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~--~g~~~DL~~~~~~~~v~~~----~~t~d~~eal------~ 113 (289)
.+.+.|+|++|.+|..++..|+..|. +|+++|++.. .....++.... ..++..+ ....+.++.+ .
T Consensus 8 ~k~~lItGas~gIG~aia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~Dv~~~~~i~~~~~~~~~~g 84 (263)
T PRK08339 8 GKLAFTTASSKGIGFGVARVLARAGA--DVILLSRNEENLKKAREKIKSES-NVDVSYIVADLTKREDLERTVKELKNIG 84 (263)
T ss_pred CCEEEEeCCCCcHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhhc-CCceEEEEecCCCHHHHHHHHHHHHhhC
Confidence 34789999999999999999999997 8999998752 22222232211 1122211 1111222222 3
Q ss_pred CCCEEEEcCCCCCCC---CCch---hhHHHhh----HHHHHHHHHHHHHhCCCcEEEEecCC
Q 022947 114 GMDIVIIPAGVPRKP---GMTR---DDLFNIN----AGIVKTLCEGIAKCCPKAIVNLISNP 165 (289)
Q Consensus 114 ~aDiVIitag~~~~~---g~~r---~d~~~~N----~~i~~~i~~~i~~~~p~aiviv~tNP 165 (289)
..|++|.++|.+... ..+. ...+..| +...+.+.+.+++.. .+.|+++|..
T Consensus 85 ~iD~lv~nag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~l~~m~~~~-~g~Ii~isS~ 145 (263)
T PRK08339 85 EPDIFFFSTGGPKPGYFMEMSMEDWEGAVKLLLYPAVYLTRALVPAMERKG-FGRIIYSTSV 145 (263)
T ss_pred CCcEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcC-CCEEEEEcCc
Confidence 589999999865321 1121 2234444 345666777766543 4566666553
No 271
>PRK06128 oxidoreductase; Provisional
Probab=97.10 E-value=0.033 Score=51.19 Aligned_cols=115 Identities=23% Similarity=0.246 Sum_probs=67.9
Q ss_pred CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCc----hhHHhhhhcccCCceEEEEe-cCCC---HH-------h
Q 022947 46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT----PGVTADISHMDTNAVVRGFL-GQQQ---LE-------D 110 (289)
Q Consensus 46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~----~g~~~DL~~~~~~~~v~~~~-~t~d---~~-------e 110 (289)
.++|.|+||+|.+|..++..|+..|. +|++.+.+.. ......+.... .++..+. +-.+ .+ +
T Consensus 55 ~k~vlITGas~gIG~~~a~~l~~~G~--~V~i~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~v~~~~~~~~~ 130 (300)
T PRK06128 55 GRKALITGADSGIGRATAIAFAREGA--DIALNYLPEEEQDAAEVVQLIQAEG--RKAVALPGDLKDEAFCRQLVERAVK 130 (300)
T ss_pred CCEEEEecCCCcHHHHHHHHHHHcCC--EEEEEeCCcchHHHHHHHHHHHHcC--CeEEEEecCCCCHHHHHHHHHHHHH
Confidence 46899999999999999999999997 8888776431 11112222211 1111111 1111 11 2
Q ss_pred hhCCCCEEEEcCCCCC--CC--CCc---hhhHHHhhHHHHHHHHHHHHHhC-CCcEEEEecC
Q 022947 111 ALTGMDIVIIPAGVPR--KP--GMT---RDDLFNINAGIVKTLCEGIAKCC-PKAIVNLISN 164 (289)
Q Consensus 111 al~~aDiVIitag~~~--~~--g~~---r~d~~~~N~~i~~~i~~~i~~~~-p~aiviv~tN 164 (289)
.+...|++|++||... .+ ..+ -.+.+..|+.....+++.+.++- +.+.|++++.
T Consensus 131 ~~g~iD~lV~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~iv~~sS 192 (300)
T PRK06128 131 ELGGLDILVNIAGKQTAVKDIADITTEQFDATFKTNVYAMFWLCKAAIPHLPPGASIINTGS 192 (300)
T ss_pred HhCCCCEEEECCcccCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHhcCcCCEEEEECC
Confidence 2347899999998642 11 111 23456778777767777766553 3456666654
No 272
>PRK05693 short chain dehydrogenase; Provisional
Probab=97.10 E-value=0.0081 Score=54.18 Aligned_cols=34 Identities=24% Similarity=0.219 Sum_probs=30.8
Q ss_pred CEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCC
Q 022947 47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN 82 (289)
Q Consensus 47 ~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~ 82 (289)
+++.|+||+|.+|..++..|+..|. +|++++++.
T Consensus 2 k~vlItGasggiG~~la~~l~~~G~--~V~~~~r~~ 35 (274)
T PRK05693 2 PVVLITGCSSGIGRALADAFKAAGY--EVWATARKA 35 (274)
T ss_pred CEEEEecCCChHHHHHHHHHHHCCC--EEEEEeCCH
Confidence 5799999999999999999999997 899999875
No 273
>PRK06701 short chain dehydrogenase; Provisional
Probab=97.09 E-value=0.035 Score=50.92 Aligned_cols=115 Identities=14% Similarity=0.125 Sum_probs=68.8
Q ss_pred CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCc---hhHHhhhhcccCCceEEEEe-cCC---CHHhhh------
Q 022947 46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT---PGVTADISHMDTNAVVRGFL-GQQ---QLEDAL------ 112 (289)
Q Consensus 46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~---~g~~~DL~~~~~~~~v~~~~-~t~---d~~eal------ 112 (289)
.++|.|+||+|.+|+.++..|+..|. +|+++++++. ......+... ..++..+. +-. ++.+.+
T Consensus 46 ~k~iLItGasggIG~~la~~l~~~G~--~V~l~~r~~~~~~~~~~~~~~~~--~~~~~~~~~Dl~~~~~~~~~~~~i~~~ 121 (290)
T PRK06701 46 GKVALITGGDSGIGRAVAVLFAKEGA--DIAIVYLDEHEDANETKQRVEKE--GVKCLLIPGDVSDEAFCKDAVEETVRE 121 (290)
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEeCCcchHHHHHHHHHHhc--CCeEEEEEccCCCHHHHHHHHHHHHHH
Confidence 45899999999999999999999997 8999988752 1111222211 11222111 111 122222
Q ss_pred -CCCCEEEEcCCCCCC--C--CCch---hhHHHhhHHHHHHHHHHHHHh-CCCcEEEEecC
Q 022947 113 -TGMDIVIIPAGVPRK--P--GMTR---DDLFNINAGIVKTLCEGIAKC-CPKAIVNLISN 164 (289)
Q Consensus 113 -~~aDiVIitag~~~~--~--g~~r---~d~~~~N~~i~~~i~~~i~~~-~p~aiviv~tN 164 (289)
...|+||+++|.... + ..+. .+.+..|+.....+.+.+.+. .+.+.++++|.
T Consensus 122 ~~~iD~lI~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~a~~~~~~~~g~iV~isS 182 (290)
T PRK06701 122 LGRLDILVNNAAFQYPQQSLEDITAEQLDKTFKTNIYSYFHMTKAALPHLKQGSAIINTGS 182 (290)
T ss_pred cCCCCEEEECCcccCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHhhCCeEEEEec
Confidence 357999999986321 1 1111 335677877777777777654 34556666654
No 274
>PRK08226 short chain dehydrogenase; Provisional
Probab=97.08 E-value=0.0081 Score=53.63 Aligned_cols=115 Identities=21% Similarity=0.246 Sum_probs=64.3
Q ss_pred CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCc-hhHHhhhhcccCCceEEEEe-cCCC---HHhh-------hC
Q 022947 46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT-PGVTADISHMDTNAVVRGFL-GQQQ---LEDA-------LT 113 (289)
Q Consensus 46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~-~g~~~DL~~~~~~~~v~~~~-~t~d---~~ea-------l~ 113 (289)
.+++.|+|++|.+|+.++..|+..|. +|+++++++. .....++... ..++..+. +-++ +++. +.
T Consensus 6 ~~~~lItG~s~giG~~la~~l~~~G~--~Vv~~~r~~~~~~~~~~~~~~--~~~~~~~~~Dl~~~~~v~~~~~~~~~~~~ 81 (263)
T PRK08226 6 GKTALITGALQGIGEGIARVFARHGA--NLILLDISPEIEKLADELCGR--GHRCTAVVADVRDPASVAAAIKRAKEKEG 81 (263)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHCCC--EEEEecCCHHHHHHHHHHHHh--CCceEEEECCCCCHHHHHHHHHHHHHHcC
Confidence 46899999999999999999999997 8999998752 1112222211 11221111 1112 2222 23
Q ss_pred CCCEEEEcCCCCCCC---CC---chhhHHHhhHHHHHHHHHHHHHh---CCCcEEEEecC
Q 022947 114 GMDIVIIPAGVPRKP---GM---TRDDLFNINAGIVKTLCEGIAKC---CPKAIVNLISN 164 (289)
Q Consensus 114 ~aDiVIitag~~~~~---g~---~r~d~~~~N~~i~~~i~~~i~~~---~p~aiviv~tN 164 (289)
..|+||+++|..... .. ...+.+..|+.....+.+.+.++ ...+.++++|.
T Consensus 82 ~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~isS 141 (263)
T PRK08226 82 RIDILVNNAGVCRLGSFLDMSDEDRDFHIDINIKGVWNVTKAVLPEMIARKDGRIVMMSS 141 (263)
T ss_pred CCCEEEECCCcCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCcEEEEECc
Confidence 679999999863211 11 12234566766555555554432 23345555543
No 275
>PRK07825 short chain dehydrogenase; Provisional
Probab=97.08 E-value=0.011 Score=53.30 Aligned_cols=115 Identities=18% Similarity=0.161 Sum_probs=63.9
Q ss_pred CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCch--hHHhhhhcccCCceEEEEecCCC-------HHhhhCCCC
Q 022947 46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP--GVTADISHMDTNAVVRGFLGQQQ-------LEDALTGMD 116 (289)
Q Consensus 46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~--g~~~DL~~~~~~~~v~~~~~t~d-------~~eal~~aD 116 (289)
.++|.|+||+|.+|..++..|+..|. .|++.++++.. ....++.... .....+...++ ..+.+.+.|
T Consensus 5 ~~~ilVtGasggiG~~la~~l~~~G~--~v~~~~r~~~~~~~~~~~~~~~~--~~~~D~~~~~~~~~~~~~~~~~~~~id 80 (273)
T PRK07825 5 GKVVAITGGARGIGLATARALAALGA--RVAIGDLDEALAKETAAELGLVV--GGPLDVTDPASFAAFLDAVEADLGPID 80 (273)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHhccce--EEEccCCCHHHHHHHHHHHHHHcCCCC
Confidence 45899999999999999999999997 89999987521 1111221110 00000111111 112235789
Q ss_pred EEEEcCCCCCCC---CCc---hhhHHHhhHHHH----HHHHHHHHHhCCCcEEEEecCC
Q 022947 117 IVIIPAGVPRKP---GMT---RDDLFNINAGIV----KTLCEGIAKCCPKAIVNLISNP 165 (289)
Q Consensus 117 iVIitag~~~~~---g~~---r~d~~~~N~~i~----~~i~~~i~~~~p~aiviv~tNP 165 (289)
++|.++|..... ..+ -...+..|+... +.+.+.+.+. +.+.|+++|.-
T Consensus 81 ~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~-~~g~iv~isS~ 138 (273)
T PRK07825 81 VLVNNAGVMPVGPFLDEPDAVTRRILDVNVYGVILGSKLAAPRMVPR-GRGHVVNVASL 138 (273)
T ss_pred EEEECCCcCCCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CCCEEEEEcCc
Confidence 999999874321 111 123455666533 4444444443 34566666643
No 276
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....
Probab=97.08 E-value=0.0057 Score=49.39 Aligned_cols=72 Identities=24% Similarity=0.331 Sum_probs=44.2
Q ss_pred CEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchhHHhhhhcccC--CceEEEEecCCCHHhhhCCCCEEEEc
Q 022947 47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDT--NAVVRGFLGQQQLEDALTGMDIVIIP 121 (289)
Q Consensus 47 ~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g~~~DL~~~~~--~~~v~~~~~t~d~~eal~~aDiVIit 121 (289)
|||+|+|++|.+|+.++..+...+-..=+..+|.++....-.|+.+... ...+.. ++|+++.++.+|+||-.
T Consensus 1 mrV~i~G~~GrMG~~i~~~i~~~~~~~lv~~v~~~~~~~~g~d~g~~~~~~~~~~~v---~~~l~~~~~~~DVvIDf 74 (124)
T PF01113_consen 1 MRVGIVGASGRMGRAIAEAILESPGFELVGAVDRKPSAKVGKDVGELAGIGPLGVPV---TDDLEELLEEADVVIDF 74 (124)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHSTTEEEEEEEETTTSTTTTSBCHHHCTSST-SSBE---BS-HHHHTTH-SEEEEE
T ss_pred CEEEEECCCCHHHHHHHHHHHhcCCcEEEEEEecCCcccccchhhhhhCcCCccccc---chhHHHhcccCCEEEEc
Confidence 6999999999999999998888543323556676652112233332211 112222 35788889999998876
No 277
>PRK12825 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=97.07 E-value=0.01 Score=51.90 Aligned_cols=35 Identities=23% Similarity=0.254 Sum_probs=29.3
Q ss_pred CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCC
Q 022947 46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN 82 (289)
Q Consensus 46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~ 82 (289)
+++|.|+||+|.+|+.++..|+++|+ +++++....
T Consensus 6 ~~~vlItGasg~iG~~l~~~l~~~g~--~v~~~~~~~ 40 (249)
T PRK12825 6 GRVALVTGAARGLGRAIALRLARAGA--DVVVHYRSD 40 (249)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCC--eEEEEeCCC
Confidence 46899999999999999999999998 666655443
No 278
>PRK08589 short chain dehydrogenase; Validated
Probab=97.07 E-value=0.011 Score=53.49 Aligned_cols=114 Identities=18% Similarity=0.259 Sum_probs=64.8
Q ss_pred CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCC-chhHHhhhhcccCCceEEEE----ecCCCHHh-------hhC
Q 022947 46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-TPGVTADISHMDTNAVVRGF----LGQQQLED-------ALT 113 (289)
Q Consensus 46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~-~~g~~~DL~~~~~~~~v~~~----~~t~d~~e-------al~ 113 (289)
.+++.|+||+|.+|..++..|+..|. +|+++++++ ......++.+.. .++..+ ....+..+ .+.
T Consensus 6 ~k~vlItGas~gIG~aia~~l~~~G~--~vi~~~r~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~~g 81 (272)
T PRK08589 6 NKVAVITGASTGIGQASAIALAQEGA--YVLAVDIAEAVSETVDKIKSNG--GKAKAYHVDISDEQQVKDFASEIKEQFG 81 (272)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCC--EEEEEeCcHHHHHHHHHHHhcC--CeEEEEEeecCCHHHHHHHHHHHHHHcC
Confidence 45899999999999999999999997 899999874 222223332211 111111 11111212 124
Q ss_pred CCCEEEEcCCCCCCCC----Cch---hhHHHhhHH----HHHHHHHHHHHhCCCcEEEEecCC
Q 022947 114 GMDIVIIPAGVPRKPG----MTR---DDLFNINAG----IVKTLCEGIAKCCPKAIVNLISNP 165 (289)
Q Consensus 114 ~aDiVIitag~~~~~g----~~r---~d~~~~N~~----i~~~i~~~i~~~~p~aiviv~tNP 165 (289)
..|++|.++|.....+ .+. ...+..|+. +.+.+.+.+++. .+.|++++..
T Consensus 82 ~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~--~g~iv~isS~ 142 (272)
T PRK08589 82 RVDVLFNNAGVDNAAGRIHEYPVDVFDKIMAVDMRGTFLMTKMLLPLMMEQ--GGSIINTSSF 142 (272)
T ss_pred CcCEEEECCCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHc--CCEEEEeCch
Confidence 5799999998753211 111 223344544 344555555443 3677776653
No 279
>PRK05565 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=97.07 E-value=0.0062 Score=53.45 Aligned_cols=103 Identities=22% Similarity=0.287 Sum_probs=58.2
Q ss_pred CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEE-eCCCch--hHHhhhhcccCCceEEEEe-cCCC---HHhhh------
Q 022947 46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLY-DVVNTP--GVTADISHMDTNAVVRGFL-GQQQ---LEDAL------ 112 (289)
Q Consensus 46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~Lv-D~~~~~--g~~~DL~~~~~~~~v~~~~-~t~d---~~eal------ 112 (289)
+++|.|+|++|.+|..++..|+..|. +++++ +++... ....++... ...+..+. +-.| +.+.+
T Consensus 5 ~~~ilI~Gasg~iG~~la~~l~~~g~--~v~~~~~r~~~~~~~~~~~~~~~--~~~~~~~~~D~~~~~~~~~~~~~~~~~ 80 (247)
T PRK05565 5 GKVAIVTGASGGIGRAIAELLAKEGA--KVVIAYDINEEAAQELLEEIKEE--GGDAIAVKADVSSEEDVENLVEQIVEK 80 (247)
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEcCCCHHHHHHHHHHHHhc--CCeEEEEECCCCCHHHHHHHHHHHHHH
Confidence 45899999999999999999998887 78887 876521 111122221 11222211 1112 22222
Q ss_pred -CCCCEEEEcCCCCCCC---CCch---hhHHHhhHHHHHHHHHHHHH
Q 022947 113 -TGMDIVIIPAGVPRKP---GMTR---DDLFNINAGIVKTLCEGIAK 152 (289)
Q Consensus 113 -~~aDiVIitag~~~~~---g~~r---~d~~~~N~~i~~~i~~~i~~ 152 (289)
...|+||+++|..... ..+. .+.+..|......+.+.+..
T Consensus 81 ~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~ 127 (247)
T PRK05565 81 FGKIDILVNNAGISNFGLVTDMTDEEWDRVIDVNLTGVMLLTRYALP 127 (247)
T ss_pred hCCCCEEEECCCcCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 2789999999864211 1111 23455676665555554443
No 280
>PRK09009 C factor cell-cell signaling protein; Provisional
Probab=97.07 E-value=0.008 Score=52.72 Aligned_cols=71 Identities=18% Similarity=0.291 Sum_probs=44.5
Q ss_pred CEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchhHHhhhhcccCCceEEEEe-cCCC------HHhhhCCCCEEE
Q 022947 47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFL-GQQQ------LEDALTGMDIVI 119 (289)
Q Consensus 47 ~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g~~~DL~~~~~~~~v~~~~-~t~d------~~eal~~aDiVI 119 (289)
|+|.|+||+|.+|..++..|+.++....+++.+++.... .. ..++..+. +-++ +.+.+...|++|
T Consensus 1 ~~vlItGas~gIG~~ia~~l~~~~~~~~v~~~~~~~~~~----~~----~~~~~~~~~Dls~~~~~~~~~~~~~~id~li 72 (235)
T PRK09009 1 MNILIVGGSGGIGKAMVKQLLERYPDATVHATYRHHKPD----FQ----HDNVQWHALDVTDEAEIKQLSEQFTQLDWLI 72 (235)
T ss_pred CEEEEECCCChHHHHHHHHHHHhCCCCEEEEEccCCccc----cc----cCceEEEEecCCCHHHHHHHHHhcCCCCEEE
Confidence 589999999999999999998876433677666644211 11 01111110 1111 223457899999
Q ss_pred EcCCCC
Q 022947 120 IPAGVP 125 (289)
Q Consensus 120 itag~~ 125 (289)
.++|..
T Consensus 73 ~~aG~~ 78 (235)
T PRK09009 73 NCVGML 78 (235)
T ss_pred ECCccc
Confidence 999975
No 281
>PRK12823 benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase; Provisional
Probab=97.07 E-value=0.0082 Score=53.50 Aligned_cols=35 Identities=34% Similarity=0.373 Sum_probs=31.8
Q ss_pred CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCC
Q 022947 46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN 82 (289)
Q Consensus 46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~ 82 (289)
.+++.|+||+|.+|.+++..|+..|. +|+++|+++
T Consensus 8 ~k~vlVtGas~gIG~~la~~l~~~G~--~v~~~~r~~ 42 (260)
T PRK12823 8 GKVVVVTGAAQGIGRGVALRAAAEGA--RVVLVDRSE 42 (260)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCC--EEEEEeCch
Confidence 46899999999999999999999997 899999875
No 282
>PRK08251 short chain dehydrogenase; Provisional
Probab=97.07 E-value=0.012 Score=51.99 Aligned_cols=115 Identities=21% Similarity=0.222 Sum_probs=63.6
Q ss_pred CEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCc--hhHHhhhhcccCCceEEEEe-cCCCH----------HhhhC
Q 022947 47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTNAVVRGFL-GQQQL----------EDALT 113 (289)
Q Consensus 47 ~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~--~g~~~DL~~~~~~~~v~~~~-~t~d~----------~eal~ 113 (289)
+++.|+||+|.+|..++..|+..|. +|++.+++.. .....++........+..+. +.++. .+.+.
T Consensus 3 k~vlItGas~giG~~la~~l~~~g~--~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 80 (248)
T PRK08251 3 QKILITGASSGLGAGMAREFAAKGR--DLALCARRTDRLEELKAELLARYPGIKVAVAALDVNDHDQVFEVFAEFRDELG 80 (248)
T ss_pred CEEEEECCCCHHHHHHHHHHHHcCC--EEEEEeCCHHHHHHHHHHHHhhCCCceEEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence 4799999999999999999999886 8999998762 11222222211111222211 11222 12235
Q ss_pred CCCEEEEcCCCCCCCCC---c---hhhHHHhhHHHHHHHHHHH----HHhCCCcEEEEecC
Q 022947 114 GMDIVIIPAGVPRKPGM---T---RDDLFNINAGIVKTLCEGI----AKCCPKAIVNLISN 164 (289)
Q Consensus 114 ~aDiVIitag~~~~~g~---~---r~d~~~~N~~i~~~i~~~i----~~~~p~aiviv~tN 164 (289)
..|++|+++|....... + -.+.+..|+.....+.+.+ ++... ..++++|.
T Consensus 81 ~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~-~~iv~~sS 140 (248)
T PRK08251 81 GLDRVIVNAGIGKGARLGTGKFWANKATAETNFVAALAQCEAAMEIFREQGS-GHLVLISS 140 (248)
T ss_pred CCCEEEECCCcCCCCCcCcCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCC-CeEEEEec
Confidence 78999999987432211 1 1223456665544444443 33333 34554443
No 283
>PRK06196 oxidoreductase; Provisional
Probab=97.06 E-value=0.0072 Score=55.96 Aligned_cols=113 Identities=21% Similarity=0.167 Sum_probs=64.5
Q ss_pred CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchh--HHhhhhcccCCceEE-EEecCCCHHh-------hhCCC
Q 022947 46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPG--VTADISHMDTNAVVR-GFLGQQQLED-------ALTGM 115 (289)
Q Consensus 46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g--~~~DL~~~~~~~~v~-~~~~t~d~~e-------al~~a 115 (289)
.++|.|+||+|.+|..++..|+..|. +|++++++.... ...++.... .+. .+....+.++ .+...
T Consensus 26 ~k~vlITGasggIG~~~a~~L~~~G~--~Vv~~~R~~~~~~~~~~~l~~v~---~~~~Dl~d~~~v~~~~~~~~~~~~~i 100 (315)
T PRK06196 26 GKTAIVTGGYSGLGLETTRALAQAGA--HVIVPARRPDVAREALAGIDGVE---VVMLDLADLESVRAFAERFLDSGRRI 100 (315)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHhhhCe---EEEccCCCHHHHHHHHHHHHhcCCCC
Confidence 35899999999999999999999997 899999875211 112221110 000 0111111111 12578
Q ss_pred CEEEEcCCCCCCCC----CchhhHHHhhHHH----HHHHHHHHHHhCCCcEEEEecC
Q 022947 116 DIVIIPAGVPRKPG----MTRDDLFNINAGI----VKTLCEGIAKCCPKAIVNLISN 164 (289)
Q Consensus 116 DiVIitag~~~~~g----~~r~d~~~~N~~i----~~~i~~~i~~~~p~aiviv~tN 164 (289)
|++|++||....+. +.....+..|... .+.+.+.+++.. .+.|+++|.
T Consensus 101 D~li~nAg~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~ll~~l~~~~-~~~iV~vSS 156 (315)
T PRK06196 101 DILINNAGVMACPETRVGDGWEAQFATNHLGHFALVNLLWPALAAGA-GARVVALSS 156 (315)
T ss_pred CEEEECCCCCCCCCccCCccHHHHHHHhhHHHHHHHHHHHHHHHhcC-CCeEEEECC
Confidence 99999998643221 1122334556544 555666665543 356666653
No 284
>PRK08993 2-deoxy-D-gluconate 3-dehydrogenase; Validated
Probab=97.06 E-value=0.032 Score=49.73 Aligned_cols=115 Identities=17% Similarity=0.223 Sum_probs=65.2
Q ss_pred CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchhHHhhhhcccCCceEEEEe-cCCC---HHhh-------hCC
Q 022947 46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFL-GQQQ---LEDA-------LTG 114 (289)
Q Consensus 46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g~~~DL~~~~~~~~v~~~~-~t~d---~~ea-------l~~ 114 (289)
.+.+.|+|++|.+|..++..|+..|. +|+++|..+......++.... ..+..+. +-+| +.+. +..
T Consensus 10 ~k~~lItG~~~gIG~a~a~~l~~~G~--~vv~~~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~ 85 (253)
T PRK08993 10 GKVAVVTGCDTGLGQGMALGLAEAGC--DIVGINIVEPTETIEQVTALG--RRFLSLTADLRKIDGIPALLERAVAEFGH 85 (253)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCC--EEEEecCcchHHHHHHHHhcC--CeEEEEECCCCCHHHHHHHHHHHHHHhCC
Confidence 34799999999999999999999997 888888765322222222111 1111111 1112 2222 246
Q ss_pred CCEEEEcCCCCCCC---CCc---hhhHHHhhHHHHH----HHHHHHHHhCCCcEEEEecC
Q 022947 115 MDIVIIPAGVPRKP---GMT---RDDLFNINAGIVK----TLCEGIAKCCPKAIVNLISN 164 (289)
Q Consensus 115 aDiVIitag~~~~~---g~~---r~d~~~~N~~i~~----~i~~~i~~~~p~aiviv~tN 164 (289)
.|++|.+||..... ..+ -.+.+..|+.... .+.+.+.+..+.+.++++|.
T Consensus 86 ~D~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~g~iv~isS 145 (253)
T PRK08993 86 IDILVNNAGLIRREDAIEFSEKDWDDVMNLNIKSVFFMSQAAAKHFIAQGNGGKIINIAS 145 (253)
T ss_pred CCEEEECCCCCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhCCCCeEEEEECc
Confidence 89999999874321 111 2234566665444 44444444344567766654
No 285
>PRK06523 short chain dehydrogenase; Provisional
Probab=97.06 E-value=0.0022 Score=57.22 Aligned_cols=112 Identities=19% Similarity=0.271 Sum_probs=63.0
Q ss_pred CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchhH-------HhhhhcccCCceEEEEecCCCHHhhhCCCCEE
Q 022947 46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGV-------TADISHMDTNAVVRGFLGQQQLEDALTGMDIV 118 (289)
Q Consensus 46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g~-------~~DL~~~~~~~~v~~~~~t~d~~eal~~aDiV 118 (289)
.++|.|+|++|.+|..++..|+..|. +|+++++++.... ..|+.+.. .+... .....+.+...|+|
T Consensus 9 ~k~vlItGas~gIG~~ia~~l~~~G~--~v~~~~r~~~~~~~~~~~~~~~D~~~~~---~~~~~--~~~~~~~~~~id~v 81 (260)
T PRK06523 9 GKRALVTGGTKGIGAATVARLLEAGA--RVVTTARSRPDDLPEGVEFVAADLTTAE---GCAAV--ARAVLERLGGVDIL 81 (260)
T ss_pred CCEEEEECCCCchhHHHHHHHHHCCC--EEEEEeCChhhhcCCceeEEecCCCCHH---HHHHH--HHHHHHHcCCCCEE
Confidence 35899999999999999999999997 8999998652110 01111100 00000 00112334678999
Q ss_pred EEcCCCCCCC-C----Cc---hhhHHHhhHHHH----HHHHHHHHHhCCCcEEEEecCC
Q 022947 119 IIPAGVPRKP-G----MT---RDDLFNINAGIV----KTLCEGIAKCCPKAIVNLISNP 165 (289)
Q Consensus 119 Iitag~~~~~-g----~~---r~d~~~~N~~i~----~~i~~~i~~~~p~aiviv~tNP 165 (289)
|.++|..... + .+ -.+.+..|+... +.+.+.+++.. .+.++++|..
T Consensus 82 i~~ag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~-~g~ii~isS~ 139 (260)
T PRK06523 82 VHVLGGSSAPAGGFAALTDEEWQDELNLNLLAAVRLDRALLPGMIARG-SGVIIHVTSI 139 (260)
T ss_pred EECCcccccCCCCcccCCHHHHHHHHhHhhHHHHHHHHHHHHHHHhcC-CcEEEEEecc
Confidence 9999854211 1 11 223345565433 44555555543 3556666654
No 286
>PRK12935 acetoacetyl-CoA reductase; Provisional
Probab=97.06 E-value=0.018 Score=50.85 Aligned_cols=115 Identities=15% Similarity=0.201 Sum_probs=63.8
Q ss_pred CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCC---chhHHhhhhcccCCceEEEEe-cCCC---HHhhh------
Q 022947 46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN---TPGVTADISHMDTNAVVRGFL-GQQQ---LEDAL------ 112 (289)
Q Consensus 46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~---~~g~~~DL~~~~~~~~v~~~~-~t~d---~~eal------ 112 (289)
.+++.|+|++|.+|+.++..|+..|. ++++.+... ......++.+.. .++..+. +..+ +.+++
T Consensus 6 ~~~~lItG~s~~iG~~la~~l~~~g~--~v~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~ 81 (247)
T PRK12935 6 GKVAIVTGGAKGIGKAITVALAQEGA--KVVINYNSSKEAAENLVNELGKEG--HDVYAVQADVSKVEDANRLVEEAVNH 81 (247)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHcCC--EEEEEcCCcHHHHHHHHHHHHhcC--CeEEEEECCCCCHHHHHHHHHHHHHH
Confidence 35899999999999999999999887 777665432 111222332211 1222211 1112 22222
Q ss_pred -CCCCEEEEcCCCCCCCC------CchhhHHHhhHHHHHHHHHHHHHh---CCCcEEEEecC
Q 022947 113 -TGMDIVIIPAGVPRKPG------MTRDDLFNINAGIVKTLCEGIAKC---CPKAIVNLISN 164 (289)
Q Consensus 113 -~~aDiVIitag~~~~~g------~~r~d~~~~N~~i~~~i~~~i~~~---~p~aiviv~tN 164 (289)
...|+||+++|...... +.-.+.+..|+.....+.+.+..+ ...+.+++++.
T Consensus 82 ~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~sS 143 (247)
T PRK12935 82 FGKVDILVNNAGITRDRTFKKLNREDWERVIDVNLSSVFNTTSAVLPYITEAEEGRIISISS 143 (247)
T ss_pred cCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEEcc
Confidence 34799999998743221 112334566766655555555433 23455666554
No 287
>PRK05866 short chain dehydrogenase; Provisional
Probab=97.05 E-value=0.0082 Score=55.24 Aligned_cols=35 Identities=20% Similarity=0.250 Sum_probs=31.8
Q ss_pred CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCC
Q 022947 46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN 82 (289)
Q Consensus 46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~ 82 (289)
.++|.|+||+|.+|..++..|+..|. +|+++|++.
T Consensus 40 ~k~vlItGasggIG~~la~~La~~G~--~Vi~~~R~~ 74 (293)
T PRK05866 40 GKRILLTGASSGIGEAAAEQFARRGA--TVVAVARRE 74 (293)
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEECCH
Confidence 36899999999999999999999997 999999876
No 288
>PRK06198 short chain dehydrogenase; Provisional
Probab=97.05 E-value=0.036 Score=49.26 Aligned_cols=115 Identities=15% Similarity=0.163 Sum_probs=63.6
Q ss_pred CCEEEEEcCCCccHHHHHHHHHhCCCccE-EEEEeCCCc--hhHHhhhhcccCCceEEEEe-cCCC---HHhh-------
Q 022947 46 GFKVAVLGAAGGIGQPLAMLMKINPLVSV-LHLYDVVNT--PGVTADISHMDTNAVVRGFL-GQQQ---LEDA------- 111 (289)
Q Consensus 46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~e-I~LvD~~~~--~g~~~DL~~~~~~~~v~~~~-~t~d---~~ea------- 111 (289)
.++|.|+||+|.+|..++..|+..|. + |+++|++.. .....++... ...+..+. +-.+ +.+.
T Consensus 6 ~k~vlItGa~g~iG~~la~~l~~~G~--~~V~~~~r~~~~~~~~~~~l~~~--~~~~~~~~~D~~~~~~~~~~~~~~~~~ 81 (260)
T PRK06198 6 GKVALVTGGTQGLGAAIARAFAERGA--AGLVICGRNAEKGEAQAAELEAL--GAKAVFVQADLSDVEDCRRVVAAADEA 81 (260)
T ss_pred CcEEEEeCCCchHHHHHHHHHHHCCC--CeEEEEcCCHHHHHHHHHHHHhc--CCeEEEEEccCCCHHHHHHHHHHHHHH
Confidence 45899999999999999999998886 5 999998752 1111222111 11222111 1112 2222
Q ss_pred hCCCCEEEEcCCCCCCC---CCch---hhHHHhhHHHHHHH----HHHHHHhCCCcEEEEecC
Q 022947 112 LTGMDIVIIPAGVPRKP---GMTR---DDLFNINAGIVKTL----CEGIAKCCPKAIVNLISN 164 (289)
Q Consensus 112 l~~aDiVIitag~~~~~---g~~r---~d~~~~N~~i~~~i----~~~i~~~~p~aiviv~tN 164 (289)
+.+.|++|.++|..... ..+. ...+..|+.....+ .+.+.+....+.++++|.
T Consensus 82 ~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~g~iv~~ss 144 (260)
T PRK06198 82 FGRLDALVNAAGLTDRGTILDTSPELFDRHFAVNVRAPFFLMQEAIKLMRRRKAEGTIVNIGS 144 (260)
T ss_pred hCCCCEEEECCCcCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCCEEEEECC
Confidence 23689999999875322 1122 12345555444443 444444333455665554
No 289
>PLN00016 RNA-binding protein; Provisional
Probab=97.05 E-value=0.0062 Score=58.03 Aligned_cols=37 Identities=22% Similarity=0.115 Sum_probs=33.1
Q ss_pred CCCCEEEEE----cCCCccHHHHHHHHHhCCCccEEEEEeCCC
Q 022947 44 SPGFKVAVL----GAAGGIGQPLAMLMKINPLVSVLHLYDVVN 82 (289)
Q Consensus 44 ~~~~KI~II----GaaG~VGs~la~~L~~~g~~~eI~LvD~~~ 82 (289)
.+++||.|+ ||+|++|++++..|+..|+ +|++++++.
T Consensus 50 ~~~~~VLVt~~~~GatG~iG~~lv~~L~~~G~--~V~~l~R~~ 90 (378)
T PLN00016 50 VEKKKVLIVNTNSGGHAFIGFYLAKELVKAGH--EVTLFTRGK 90 (378)
T ss_pred cccceEEEEeccCCCceeEhHHHHHHHHHCCC--EEEEEecCC
Confidence 345789999 9999999999999999998 999999876
No 290
>PRK08220 2,3-dihydroxybenzoate-2,3-dehydrogenase; Validated
Probab=97.04 E-value=0.0097 Score=52.60 Aligned_cols=35 Identities=31% Similarity=0.289 Sum_probs=31.4
Q ss_pred CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCC
Q 022947 46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN 82 (289)
Q Consensus 46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~ 82 (289)
.+++.|+|++|.+|+.++..|+..|. +|+++|.+.
T Consensus 8 ~k~vlItGas~~iG~~la~~l~~~G~--~v~~~~~~~ 42 (252)
T PRK08220 8 GKTVWVTGAAQGIGYAVALAFVEAGA--KVIGFDQAF 42 (252)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCC--EEEEEecch
Confidence 45899999999999999999999997 899998865
No 291
>PRK07454 short chain dehydrogenase; Provisional
Probab=97.04 E-value=0.0062 Score=53.63 Aligned_cols=36 Identities=22% Similarity=0.241 Sum_probs=32.2
Q ss_pred CCCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCC
Q 022947 45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN 82 (289)
Q Consensus 45 ~~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~ 82 (289)
+++++.|+|++|.+|..++..|+.+|. +|+++++++
T Consensus 5 ~~k~vlItG~sg~iG~~la~~l~~~G~--~V~~~~r~~ 40 (241)
T PRK07454 5 SMPRALITGASSGIGKATALAFAKAGW--DLALVARSQ 40 (241)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCC--EEEEEeCCH
Confidence 356899999999999999999999997 899999875
No 292
>PRK08177 short chain dehydrogenase; Provisional
Probab=97.04 E-value=0.0086 Score=52.37 Aligned_cols=34 Identities=15% Similarity=0.064 Sum_probs=31.3
Q ss_pred CEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCC
Q 022947 47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN 82 (289)
Q Consensus 47 ~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~ 82 (289)
+++.|+|++|.+|+.++..|+..|. +|+++|+++
T Consensus 2 k~vlItG~sg~iG~~la~~l~~~G~--~V~~~~r~~ 35 (225)
T PRK08177 2 RTALIIGASRGLGLGLVDRLLERGW--QVTATVRGP 35 (225)
T ss_pred CEEEEeCCCchHHHHHHHHHHhCCC--EEEEEeCCC
Confidence 4799999999999999999999997 899999876
No 293
>PRK12747 short chain dehydrogenase; Provisional
Probab=97.04 E-value=0.037 Score=49.07 Aligned_cols=33 Identities=24% Similarity=0.290 Sum_probs=28.9
Q ss_pred CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeC
Q 022947 46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDV 80 (289)
Q Consensus 46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~ 80 (289)
.+++.|+|++|.+|.+++..|+..|. +|++.+.
T Consensus 4 ~k~~lItGas~gIG~~ia~~l~~~G~--~v~~~~~ 36 (252)
T PRK12747 4 GKVALVTGASRGIGRAIAKRLANDGA--LVAIHYG 36 (252)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHCCC--eEEEEcC
Confidence 45899999999999999999999997 7888754
No 294
>PRK12743 oxidoreductase; Provisional
Probab=97.04 E-value=0.038 Score=49.29 Aligned_cols=115 Identities=15% Similarity=0.137 Sum_probs=63.1
Q ss_pred CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCC-ch--hHHhhhhcccCCceEEEEe-cCCCH---Hh-------h
Q 022947 46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-TP--GVTADISHMDTNAVVRGFL-GQQQL---ED-------A 111 (289)
Q Consensus 46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~-~~--g~~~DL~~~~~~~~v~~~~-~t~d~---~e-------a 111 (289)
+++|.|+||+|.+|..++..|+..|. +|++++... .. ....++.... ..+..+. +-++. ++ .
T Consensus 2 ~k~vlItGas~giG~~~a~~l~~~G~--~V~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~ 77 (256)
T PRK12743 2 AQVAIVTASDSGIGKACALLLAQQGF--DIGITWHSDEEGAKETAEEVRSHG--VRAEIRQLDLSDLPEGAQALDKLIQR 77 (256)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCC--EEEEEeCCChHHHHHHHHHHHhcC--CceEEEEccCCCHHHHHHHHHHHHHH
Confidence 34899999999999999999999997 888776433 11 1122222211 1222111 11121 11 1
Q ss_pred hCCCCEEEEcCCCCCCC---CCc---hhhHHHhhHHHHHHHHHHHH----HhCCCcEEEEecC
Q 022947 112 LTGMDIVIIPAGVPRKP---GMT---RDDLFNINAGIVKTLCEGIA----KCCPKAIVNLISN 164 (289)
Q Consensus 112 l~~aDiVIitag~~~~~---g~~---r~d~~~~N~~i~~~i~~~i~----~~~p~aiviv~tN 164 (289)
+...|++|+++|..... ..+ -.+.+..|+.....+.+.+. +....+.++++|.
T Consensus 78 ~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~~~g~ii~isS 140 (256)
T PRK12743 78 LGRIDVLVNNAGAMTKAPFLDMDFDEWRKIFTVDVDGAFLCSQIAARHMVKQGQGGRIINITS 140 (256)
T ss_pred cCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCeEEEEEee
Confidence 24689999999864321 111 12345566555555544433 3333456766665
No 295
>PRK07097 gluconate 5-dehydrogenase; Provisional
Probab=97.03 E-value=0.013 Score=52.51 Aligned_cols=116 Identities=17% Similarity=0.240 Sum_probs=64.4
Q ss_pred CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCc--hhHHhhhhcccCCceEEEEe-cCCCH---Hh-------hh
Q 022947 46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTNAVVRGFL-GQQQL---ED-------AL 112 (289)
Q Consensus 46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~--~g~~~DL~~~~~~~~v~~~~-~t~d~---~e-------al 112 (289)
.+++.|+|++|.+|..++..|+..|. +|++.|.++. .....++.... .++..+. +-++. ++ .+
T Consensus 10 ~k~~lItGa~~~iG~~ia~~l~~~G~--~vv~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 85 (265)
T PRK07097 10 GKIALITGASYGIGFAIAKAYAKAGA--TIVFNDINQELVDKGLAAYRELG--IEAHGYVCDVTDEDGVQAMVSQIEKEV 85 (265)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCC--eEEEEeCCHHHHHHHHHHHHhcC--CceEEEEcCCCCHHHHHHHHHHHHHhC
Confidence 35799999999999999999999997 8999987652 11222232211 1222111 11121 11 22
Q ss_pred CCCCEEEEcCCCCCC-C--CCc---hhhHHHhhHHHH----HHHHHHHHHhCCCcEEEEecCCC
Q 022947 113 TGMDIVIIPAGVPRK-P--GMT---RDDLFNINAGIV----KTLCEGIAKCCPKAIVNLISNPV 166 (289)
Q Consensus 113 ~~aDiVIitag~~~~-~--g~~---r~d~~~~N~~i~----~~i~~~i~~~~p~aiviv~tNPv 166 (289)
...|++|.++|.... + ..+ -...+..|+... +.+.+.+.+ ...+.|++++...
T Consensus 86 ~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~-~~~g~iv~isS~~ 148 (265)
T PRK07097 86 GVIDILVNNAGIIKRIPMLEMSAEDFRQVIDIDLNAPFIVSKAVIPSMIK-KGHGKIINICSMM 148 (265)
T ss_pred CCCCEEEECCCCCCCCCcccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHh-cCCcEEEEEcCcc
Confidence 457999999986421 1 111 122344555433 344444443 3456677766644
No 296
>PRK06057 short chain dehydrogenase; Provisional
Probab=97.02 E-value=0.0069 Score=53.96 Aligned_cols=35 Identities=20% Similarity=0.250 Sum_probs=31.9
Q ss_pred CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCC
Q 022947 46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN 82 (289)
Q Consensus 46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~ 82 (289)
.++|.|+||+|.+|..++..+++.|. +|+++|+++
T Consensus 7 ~~~vlItGasggIG~~~a~~l~~~G~--~v~~~~r~~ 41 (255)
T PRK06057 7 GRVAVITGGGSGIGLATARRLAAEGA--TVVVGDIDP 41 (255)
T ss_pred CCEEEEECCCchHHHHHHHHHHHcCC--EEEEEeCCH
Confidence 46899999999999999999999997 899999876
No 297
>PRK06171 sorbitol-6-phosphate 2-dehydrogenase; Provisional
Probab=97.02 E-value=0.0037 Score=55.98 Aligned_cols=35 Identities=23% Similarity=0.271 Sum_probs=31.6
Q ss_pred CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCC
Q 022947 46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN 82 (289)
Q Consensus 46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~ 82 (289)
.+++.|+|++|.+|..++..|+..|. +|++.|+++
T Consensus 9 ~k~vlItG~s~gIG~~la~~l~~~G~--~v~~~~~~~ 43 (266)
T PRK06171 9 GKIIIVTGGSSGIGLAIVKELLANGA--NVVNADIHG 43 (266)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHCCC--EEEEEeCCc
Confidence 35899999999999999999999997 899999876
No 298
>COG1090 Predicted nucleoside-diphosphate sugar epimerase [General function prediction only]
Probab=97.02 E-value=0.0057 Score=56.05 Aligned_cols=98 Identities=24% Similarity=0.292 Sum_probs=62.4
Q ss_pred EEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchhHHhhhhcccCCceEEEEecCCCHHhhhC-CCCEEEEcCCCCCC
Q 022947 49 VAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALT-GMDIVIIPAGVPRK 127 (289)
Q Consensus 49 I~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~eal~-~aDiVIitag~~~~ 127 (289)
|+|+|++|+||+++...|...|+ +|..+-+++...... .+. .+... +.+.+... ++|+||..||.|--
T Consensus 1 IliTGgTGlIG~~L~~~L~~~gh--~v~iltR~~~~~~~~--~~~----~v~~~---~~~~~~~~~~~DavINLAG~~I~ 69 (297)
T COG1090 1 ILITGGTGLIGRALTARLRKGGH--QVTILTRRPPKASQN--LHP----NVTLW---EGLADALTLGIDAVINLAGEPIA 69 (297)
T ss_pred CeEeccccchhHHHHHHHHhCCC--eEEEEEcCCcchhhh--cCc----ccccc---chhhhcccCCCCEEEECCCCccc
Confidence 67999999999999999999998 899988766221111 111 11111 11223333 79999999997643
Q ss_pred CC---Cc-hhhHHHhhHHHHHHHHHHHHHhCCCc
Q 022947 128 PG---MT-RDDLFNINAGIVKTLCEGIAKCCPKA 157 (289)
Q Consensus 128 ~g---~~-r~d~~~~N~~i~~~i~~~i~~~~p~a 157 (289)
.. .. ...+..--+...+.+.+.|.+.....
T Consensus 70 ~rrWt~~~K~~i~~SRi~~T~~L~e~I~~~~~~P 103 (297)
T COG1090 70 ERRWTEKQKEEIRQSRINTTEKLVELIAASETKP 103 (297)
T ss_pred cccCCHHHHHHHHHHHhHHHHHHHHHHHhccCCC
Confidence 21 11 23344445677788888888765333
No 299
>PRK07478 short chain dehydrogenase; Provisional
Probab=97.02 E-value=0.023 Score=50.44 Aligned_cols=154 Identities=16% Similarity=0.171 Sum_probs=81.7
Q ss_pred CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCc--hhHHhhhhcccCCceEEEEe-cCCC---HHhh-------h
Q 022947 46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTNAVVRGFL-GQQQ---LEDA-------L 112 (289)
Q Consensus 46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~--~g~~~DL~~~~~~~~v~~~~-~t~d---~~ea-------l 112 (289)
.+++.|+||+|.+|..++..|+..|. +|++.++++. .....++.... .++..+. +..+ .++. +
T Consensus 6 ~k~~lItGas~giG~~ia~~l~~~G~--~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~ 81 (254)
T PRK07478 6 GKVAIITGASSGIGRAAAKLFAREGA--KVVVGARRQAELDQLVAEIRAEG--GEAVALAGDVRDEAYAKALVALAVERF 81 (254)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEcCCCCHHHHHHHHHHHHHhc
Confidence 35899999999999999999999997 8999998762 22222333221 1122111 1112 2222 2
Q ss_pred CCCCEEEEcCCCCC--CC--CCc---hhhHHHhhHH----HHHHHHHHHHHhCCCcEEEEecCCCcccHHHHHHHHHHhC
Q 022947 113 TGMDIVIIPAGVPR--KP--GMT---RDDLFNINAG----IVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVG 181 (289)
Q Consensus 113 ~~aDiVIitag~~~--~~--g~~---r~d~~~~N~~----i~~~i~~~i~~~~p~aiviv~tNPvd~~t~~~~~~~~~~~ 181 (289)
...|++|.++|... .+ ..+ -...+..|+. ..+.+.+.+.+. ..+.+++++...... .
T Consensus 82 ~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~l~~~-~~~~iv~~sS~~~~~-----------~ 149 (254)
T PRK07478 82 GGLDIAFNNAGTLGEMGPVAEMSLEGWRETLATNLTSAFLGAKHQIPAMLAR-GGGSLIFTSTFVGHT-----------A 149 (254)
T ss_pred CCCCEEEECCCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhc-CCceEEEEechHhhc-----------c
Confidence 36899999998632 12 112 1234566664 444555555543 334555555422110 1
Q ss_pred CCCCCcEEEeeeccHHHHHHHHHHHcCCCCcceeee
Q 022947 182 TYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVP 217 (289)
Q Consensus 182 ~~~~~kviG~t~lds~R~~~~lA~~l~v~~~~V~~~ 217 (289)
+.+..-.++.+..-...+-+.++++++ +..|++.
T Consensus 150 ~~~~~~~Y~~sK~a~~~~~~~la~e~~--~~gi~v~ 183 (254)
T PRK07478 150 GFPGMAAYAASKAGLIGLTQVLAAEYG--AQGIRVN 183 (254)
T ss_pred CCCCcchhHHHHHHHHHHHHHHHHHHh--hcCEEEE
Confidence 233333344443333345566666664 3345444
No 300
>PRK08085 gluconate 5-dehydrogenase; Provisional
Probab=97.02 E-value=0.014 Score=51.97 Aligned_cols=115 Identities=19% Similarity=0.274 Sum_probs=64.4
Q ss_pred CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCc--hhHHhhhhcccCCceEEEEe-cCCC---HHh-------hh
Q 022947 46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTNAVVRGFL-GQQQ---LED-------AL 112 (289)
Q Consensus 46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~--~g~~~DL~~~~~~~~v~~~~-~t~d---~~e-------al 112 (289)
.+++.|+||+|.+|..++..|+..|. +|++.|+++. .....++.+.. ..+..+. +-.| .++ .+
T Consensus 9 ~k~~lItGas~giG~~ia~~L~~~G~--~vvl~~r~~~~~~~~~~~l~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 84 (254)
T PRK08085 9 GKNILITGSAQGIGFLLATGLAEYGA--EIIINDITAERAELAVAKLRQEG--IKAHAAPFNVTHKQEVEAAIEHIEKDI 84 (254)
T ss_pred CCEEEEECCCChHHHHHHHHHHHcCC--EEEEEcCCHHHHHHHHHHHHhcC--CeEEEEecCCCCHHHHHHHHHHHHHhc
Confidence 45899999999999999999999997 9999998752 22222333221 1111110 1112 111 12
Q ss_pred CCCCEEEEcCCCCCC-C--CCc---hhhHHHhhHHHHHHHHHHHHHh---CCCcEEEEecC
Q 022947 113 TGMDIVIIPAGVPRK-P--GMT---RDDLFNINAGIVKTLCEGIAKC---CPKAIVNLISN 164 (289)
Q Consensus 113 ~~aDiVIitag~~~~-~--g~~---r~d~~~~N~~i~~~i~~~i~~~---~p~aiviv~tN 164 (289)
...|+||.++|.... + ..+ -...+..|+.....+.+.+.++ ...+.++++|.
T Consensus 85 ~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~isS 145 (254)
T PRK08085 85 GPIDVLINNAGIQRRHPFTEFPEQEWNDVIAVNQTAVFLVSQAVARYMVKRQAGKIINICS 145 (254)
T ss_pred CCCCEEEECCCcCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEEcc
Confidence 457999999986421 1 111 2234566655544444444432 23355666553
No 301
>PRK08628 short chain dehydrogenase; Provisional
Probab=97.01 E-value=0.017 Score=51.33 Aligned_cols=114 Identities=16% Similarity=0.140 Sum_probs=64.0
Q ss_pred CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCc-hhHHhhhhcccCCceEEEEe-cCC---CHHhhh-------C
Q 022947 46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT-PGVTADISHMDTNAVVRGFL-GQQ---QLEDAL-------T 113 (289)
Q Consensus 46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~-~g~~~DL~~~~~~~~v~~~~-~t~---d~~eal-------~ 113 (289)
.+++.|+||+|.+|..++..|+..|. +++++++++. .....++.... .++..+. +-+ ++.+.+ .
T Consensus 7 ~~~ilItGasggiG~~la~~l~~~G~--~v~~~~r~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 82 (258)
T PRK08628 7 DKVVIVTGGASGIGAAISLRLAEEGA--IPVIFGRSAPDDEFAEELRALQ--PRAEFVQVDLTDDAQCRDAVEQTVAKFG 82 (258)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHcCC--cEEEEcCChhhHHHHHHHHhcC--CceEEEEccCCCHHHHHHHHHHHHHhcC
Confidence 35899999999999999999999997 7888888762 21222332211 1222111 111 222223 3
Q ss_pred CCCEEEEcCCCCCCCCC-----chhhHHHhhHHHHHHHHHHHHHhC--CCcEEEEec
Q 022947 114 GMDIVIIPAGVPRKPGM-----TRDDLFNINAGIVKTLCEGIAKCC--PKAIVNLIS 163 (289)
Q Consensus 114 ~aDiVIitag~~~~~g~-----~r~d~~~~N~~i~~~i~~~i~~~~--p~aiviv~t 163 (289)
..|+||+++|....... +-.+.+..|+.....+.+.+.++. ..+.++++|
T Consensus 83 ~id~vi~~ag~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~iv~~s 139 (258)
T PRK08628 83 RIDGLVNNAGVNDGVGLEAGREAFVASLERNLIHYYVMAHYCLPHLKASRGAIVNIS 139 (258)
T ss_pred CCCEEEECCcccCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHhhccCcEEEEEC
Confidence 67999999986432211 112345666665555555444321 234455444
No 302
>PRK06935 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=97.01 E-value=0.012 Score=52.49 Aligned_cols=35 Identities=20% Similarity=0.189 Sum_probs=31.3
Q ss_pred CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCC
Q 022947 46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN 82 (289)
Q Consensus 46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~ 82 (289)
.++|.|+||+|.+|..++..|+..|. .|++++.++
T Consensus 15 ~k~vlItGas~gIG~~ia~~l~~~G~--~v~~~~~~~ 49 (258)
T PRK06935 15 GKVAIVTGGNTGLGQGYAVALAKAGA--DIIITTHGT 49 (258)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCC--EEEEEeCCc
Confidence 46899999999999999999999997 899998864
No 303
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=97.01 E-value=0.0031 Score=51.62 Aligned_cols=76 Identities=21% Similarity=0.267 Sum_probs=51.6
Q ss_pred CCCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchhHHhhhhcccCCceEEEEecCCCHHhhhCCCCEEEEcCCC
Q 022947 45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGV 124 (289)
Q Consensus 45 ~~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~eal~~aDiVIitag~ 124 (289)
+..|+.|+|| |-+|..++..|...|. .+|.+++++..+ +.+|........+.... .+++.+.+.++|+||.+.+.
T Consensus 11 ~~~~vlviGa-Gg~ar~v~~~L~~~g~-~~i~i~nRt~~r--a~~l~~~~~~~~~~~~~-~~~~~~~~~~~DivI~aT~~ 85 (135)
T PF01488_consen 11 KGKRVLVIGA-GGAARAVAAALAALGA-KEITIVNRTPER--AEALAEEFGGVNIEAIP-LEDLEEALQEADIVINATPS 85 (135)
T ss_dssp TTSEEEEESS-SHHHHHHHHHHHHTTS-SEEEEEESSHHH--HHHHHHHHTGCSEEEEE-GGGHCHHHHTESEEEE-SST
T ss_pred CCCEEEEECC-HHHHHHHHHHHHHcCC-CEEEEEECCHHH--HHHHHHHcCccccceee-HHHHHHHHhhCCeEEEecCC
Confidence 4569999998 9999999999999985 579999987522 22222221122333332 24566788999999998655
Q ss_pred C
Q 022947 125 P 125 (289)
Q Consensus 125 ~ 125 (289)
+
T Consensus 86 ~ 86 (135)
T PF01488_consen 86 G 86 (135)
T ss_dssp T
T ss_pred C
Confidence 4
No 304
>PRK09242 tropinone reductase; Provisional
Probab=97.01 E-value=0.027 Score=50.09 Aligned_cols=116 Identities=17% Similarity=0.175 Sum_probs=64.5
Q ss_pred CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCc--hhHHhhhhcccCCceEEEEe-cCCC----------HHhhh
Q 022947 46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTNAVVRGFL-GQQQ----------LEDAL 112 (289)
Q Consensus 46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~--~g~~~DL~~~~~~~~v~~~~-~t~d----------~~eal 112 (289)
.+++.|+|++|.+|..++..|+..|. +|++++++.. .....++.......++..+. +-.+ ..+.+
T Consensus 9 ~k~~lItGa~~gIG~~~a~~l~~~G~--~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 86 (257)
T PRK09242 9 GQTALITGASKGIGLAIAREFLGLGA--DVLIVARDADALAQARDELAEEFPEREVHGLAADVSDDEDRRAILDWVEDHW 86 (257)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHcCC--EEEEEeCCHHHHHHHHHHHHhhCCCCeEEEEECCCCCHHHHHHHHHHHHHHc
Confidence 35899999999999999999999997 8999998762 22222332221011222111 1111 12234
Q ss_pred CCCCEEEEcCCCCCC-C--CCch---hhHHHhhHHHHHHH----HHHHHHhCCCcEEEEecC
Q 022947 113 TGMDIVIIPAGVPRK-P--GMTR---DDLFNINAGIVKTL----CEGIAKCCPKAIVNLISN 164 (289)
Q Consensus 113 ~~aDiVIitag~~~~-~--g~~r---~d~~~~N~~i~~~i----~~~i~~~~p~aiviv~tN 164 (289)
...|+||.++|.... + ..+. ...+..|+.....+ .+.+++. +.+.++++|.
T Consensus 87 g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~-~~~~ii~~sS 147 (257)
T PRK09242 87 DGLHILVNNAGGNIRKAAIDYTEDEWRGIFETNLFSAFELSRYAHPLLKQH-ASSAIVNIGS 147 (257)
T ss_pred CCCCEEEECCCCCCCCChhhCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhc-CCceEEEECc
Confidence 578999999986321 1 1111 22345565544444 4444433 3455655554
No 305
>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA. NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....
Probab=97.00 E-value=0.0029 Score=55.87 Aligned_cols=94 Identities=17% Similarity=0.165 Sum_probs=59.2
Q ss_pred EEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchhHHhhhhcccCCceEEE--EecCCCHHhhhCCCCEEEEcCCCCC
Q 022947 49 VAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRG--FLGQQQLEDALTGMDIVIIPAGVPR 126 (289)
Q Consensus 49 I~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g~~~DL~~~~~~~~v~~--~~~t~d~~eal~~aDiVIitag~~~ 126 (289)
|+|+||+|.+|++++..|+..++ +|..+=++........|.+.. ..+.. +....++.++++|+|.||++.+...
T Consensus 1 I~V~GatG~~G~~v~~~L~~~~~--~V~~l~R~~~~~~~~~l~~~g--~~vv~~d~~~~~~l~~al~g~d~v~~~~~~~~ 76 (233)
T PF05368_consen 1 ILVTGATGNQGRSVVRALLSAGF--SVRALVRDPSSDRAQQLQALG--AEVVEADYDDPESLVAALKGVDAVFSVTPPSH 76 (233)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTG--CEEEEESSSHHHHHHHHHHTT--TEEEES-TT-HHHHHHHHTTCSEEEEESSCSC
T ss_pred CEEECCccHHHHHHHHHHHhCCC--CcEEEEeccchhhhhhhhccc--ceEeecccCCHHHHHHHHcCCceEEeecCcch
Confidence 78999999999999999998776 777776665222233333322 11111 1112356778999999999866432
Q ss_pred CCCCchhhHHHhhHHHHHHHHHHHHHhCCC
Q 022947 127 KPGMTRDDLFNINAGIVKTLCEGIAKCCPK 156 (289)
Q Consensus 127 ~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~ 156 (289)
. .-.+..+.+++..++.+-+
T Consensus 77 ---~-------~~~~~~~~li~Aa~~agVk 96 (233)
T PF05368_consen 77 ---P-------SELEQQKNLIDAAKAAGVK 96 (233)
T ss_dssp ---C-------CHHHHHHHHHHHHHHHT-S
T ss_pred ---h-------hhhhhhhhHHHhhhccccc
Confidence 1 1234456677777776633
No 306
>PRK07453 protochlorophyllide oxidoreductase; Validated
Probab=97.00 E-value=0.0064 Score=56.42 Aligned_cols=114 Identities=12% Similarity=0.037 Sum_probs=64.0
Q ss_pred CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCc--hhHHhhhhcccCCceEEEEe-cCCC---HHhhh-------
Q 022947 46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTNAVVRGFL-GQQQ---LEDAL------- 112 (289)
Q Consensus 46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~--~g~~~DL~~~~~~~~v~~~~-~t~d---~~eal------- 112 (289)
+++|.|+||+|.+|..++..|+..|. +|++++++.. .....++... ...+..+. +-.| .++.+
T Consensus 6 ~k~vlVTGas~gIG~~~a~~L~~~G~--~V~~~~r~~~~~~~~~~~l~~~--~~~~~~~~~Dl~~~~~v~~~~~~~~~~~ 81 (322)
T PRK07453 6 KGTVIITGASSGVGLYAAKALAKRGW--HVIMACRNLKKAEAAAQELGIP--PDSYTIIHIDLGDLDSVRRFVDDFRALG 81 (322)
T ss_pred CCEEEEEcCCChHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHhhcc--CCceEEEEecCCCHHHHHHHHHHHHHhC
Confidence 45799999999999999999999996 8999998752 2222223211 11222111 1112 22222
Q ss_pred CCCCEEEEcCCCCCC----CCCc---hhhHHHhhHHH----HHHHHHHHHHhCC-CcEEEEec
Q 022947 113 TGMDIVIIPAGVPRK----PGMT---RDDLFNINAGI----VKTLCEGIAKCCP-KAIVNLIS 163 (289)
Q Consensus 113 ~~aDiVIitag~~~~----~g~~---r~d~~~~N~~i----~~~i~~~i~~~~p-~aiviv~t 163 (289)
...|++|..||.... ...+ -...+..|... .+.+.+.+++... .+.|+++|
T Consensus 82 ~~iD~li~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~~~~riV~vs 144 (322)
T PRK07453 82 KPLDALVCNAAVYMPLLKEPLRSPQGYELSMATNHLGHFLLCNLLLEDLKKSPAPDPRLVILG 144 (322)
T ss_pred CCccEEEECCcccCCCCCCCCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHhCCCCCceEEEEc
Confidence 248999999986321 1112 12345666654 4444555544432 24555554
No 307
>TIGR03649 ergot_EASG ergot alkaloid biosynthesis protein, AFUA_2G17970 family. This family consists of fungal proteins of unknown function associated with secondary metabolite biosynthesis, such as of the ergot alkaloids such as ergovaline. Nomenclature differs because gene order differs - this is EasG in Neotyphodium lolii but is designated ergot alkaloid biosynthetic protein A in several other fungi.
Probab=97.00 E-value=0.0041 Score=56.49 Aligned_cols=69 Identities=12% Similarity=0.251 Sum_probs=44.9
Q ss_pred EEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchhHHhhhhcccCCceEEEEecCCCHHhhh------CC-CCEEEE
Q 022947 48 KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDAL------TG-MDIVII 120 (289)
Q Consensus 48 KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~eal------~~-aDiVIi 120 (289)
||.|+||+|++|+.++..|+..|+ +|..+.++........... ... .+...+++.+++ ++ +|.|++
T Consensus 1 ~ilVtGatG~iG~~vv~~L~~~g~--~V~~~~R~~~~~~~~~~~~----~~~-d~~d~~~l~~a~~~~~~~~g~~d~v~~ 73 (285)
T TIGR03649 1 TILLTGGTGKTASRIARLLQAASV--PFLVASRSSSSSAGPNEKH----VKF-DWLDEDTWDNPFSSDDGMEPEISAVYL 73 (285)
T ss_pred CEEEEcCCChHHHHHHHHHHhCCC--cEEEEeCCCccccCCCCcc----ccc-cCCCHHHHHHHHhcccCcCCceeEEEE
Confidence 589999999999999999999887 8999988762111000000 000 111223455666 67 999998
Q ss_pred cCC
Q 022947 121 PAG 123 (289)
Q Consensus 121 tag 123 (289)
+++
T Consensus 74 ~~~ 76 (285)
T TIGR03649 74 VAP 76 (285)
T ss_pred eCC
Confidence 865
No 308
>PRK15059 tartronate semialdehyde reductase; Provisional
Probab=97.00 E-value=0.0031 Score=58.42 Aligned_cols=63 Identities=17% Similarity=0.318 Sum_probs=46.0
Q ss_pred CEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchhHHhhhhcccCCceEEEEecCCCHHhhhCCCCEEEEcC
Q 022947 47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPA 122 (289)
Q Consensus 47 ~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~eal~~aDiVIita 122 (289)
|||++||. |.+|+.++..|...|+ +|.++|+++. ..++.... ... ..+..++.++||+||++.
T Consensus 1 m~Ig~IGl-G~MG~~ma~~L~~~G~--~v~v~~~~~~---~~~~~~~g----~~~---~~s~~~~~~~advVi~~v 63 (292)
T PRK15059 1 MKLGFIGL-GIMGTPMAINLARAGH--QLHVTTIGPV---ADELLSLG----AVS---VETARQVTEASDIIFIMV 63 (292)
T ss_pred CeEEEEcc-CHHHHHHHHHHHHCCC--eEEEEeCCHh---HHHHHHcC----Cee---cCCHHHHHhcCCEEEEeC
Confidence 58999998 9999999999999997 8889998652 12222211 111 124567789999999985
No 309
>PRK05557 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=96.99 E-value=0.013 Score=51.14 Aligned_cols=115 Identities=23% Similarity=0.293 Sum_probs=64.0
Q ss_pred CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCc---hhHHhhhhcccCCceEEEEe-cCCC---HHhh-------
Q 022947 46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT---PGVTADISHMDTNAVVRGFL-GQQQ---LEDA------- 111 (289)
Q Consensus 46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~---~g~~~DL~~~~~~~~v~~~~-~t~d---~~ea------- 111 (289)
.++|.|+|++|++|+.++..|+..|. +|+++..+.. .....++.... ..+..+. +-.+ +.++
T Consensus 5 ~~~vlItG~sg~iG~~l~~~l~~~G~--~v~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~ 80 (248)
T PRK05557 5 GKVALVTGASRGIGRAIAERLAAQGA--NVVINYASSEAGAEALVAEIGALG--GKALAVQGDVSDAESVERAVDEAKAE 80 (248)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCC--EEEEEeCCchhHHHHHHHHHHhcC--CceEEEEcCCCCHHHHHHHHHHHHHH
Confidence 45899999999999999999999987 7867765542 11112222111 1222111 1111 2122
Q ss_pred hCCCCEEEEcCCCCCCC---CCch---hhHHHhhHHHHHHHHHHHHHhC---CCcEEEEecC
Q 022947 112 LTGMDIVIIPAGVPRKP---GMTR---DDLFNINAGIVKTLCEGIAKCC---PKAIVNLISN 164 (289)
Q Consensus 112 l~~aDiVIitag~~~~~---g~~r---~d~~~~N~~i~~~i~~~i~~~~---p~aiviv~tN 164 (289)
+.+.|.||+++|..... ..+. ...+..|+.....+.+.+.++. +...++++|.
T Consensus 81 ~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~v~iss 142 (248)
T PRK05557 81 FGGVDILVNNAGITRDNLLMRMKEEDWDRVIDTNLTGVFNLTKAVARPMMKQRSGRIINISS 142 (248)
T ss_pred cCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCeEEEEEcc
Confidence 24689999999864321 1111 1234566666666666665542 2345555554
No 310
>TIGR02415 23BDH acetoin reductases. One member of this family, as characterized in Klebsiella terrigena, is described as able to interconvert acetoin + NADH with meso-2,3-butanediol + NAD(+). It is also called capable of irreversible reduction of diacetyl with NADH to acetoin. Blomqvist, et al. decline to specify either EC 1.1.1.4 which is (R,R)-butanediol dehydrogenase, or EC 1.1.1.5, which is acetoin dehydrogenase without a specified stereochemistry, for this enzyme. This enzyme is a homotetramer in the family of short chain dehydrogenases (pfam00106). Another member of this family, from Corynebacterium glutamicum, is called L-2,3-butanediol dehydrogenase (PubMed:11577733).
Probab=96.99 E-value=0.019 Score=50.81 Aligned_cols=112 Identities=18% Similarity=0.283 Sum_probs=63.4
Q ss_pred EEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCc--hhHHhhhhcccCCceEEEEe-cCCC---HHhh-------hCC
Q 022947 48 KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTNAVVRGFL-GQQQ---LEDA-------LTG 114 (289)
Q Consensus 48 KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~--~g~~~DL~~~~~~~~v~~~~-~t~d---~~ea-------l~~ 114 (289)
++.|+|++|.+|..++..|++.|. +|++++.++. .....++.... ..+..+. +-.| +.+. +..
T Consensus 2 ~~lItG~sg~iG~~la~~l~~~G~--~v~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~Dl~~~~~i~~~~~~~~~~~~~ 77 (254)
T TIGR02415 2 VALVTGGAQGIGKGIAERLAKDGF--AVAVADLNEETAKETAKEINQAG--GKAVAYKLDVSDKDQVFSAIDQAAEKFGG 77 (254)
T ss_pred EEEEeCCCchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC--CeEEEEEcCCCCHHHHHHHHHHHHHHcCC
Confidence 689999999999999999999997 8999988652 11222232211 1222111 1112 2122 235
Q ss_pred CCEEEEcCCCCCC-C--CCchh---hHHHhhHH----HHHHHHHHHHHhCCCcEEEEec
Q 022947 115 MDIVIIPAGVPRK-P--GMTRD---DLFNINAG----IVKTLCEGIAKCCPKAIVNLIS 163 (289)
Q Consensus 115 aDiVIitag~~~~-~--g~~r~---d~~~~N~~----i~~~i~~~i~~~~p~aiviv~t 163 (289)
.|+||+++|.... + +.+.. ..+..|+. +++.+.+.+++....+.++++|
T Consensus 78 id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~iv~~s 136 (254)
T TIGR02415 78 FDVMVNNAGVAPITPILEITEEELKKVYNVNVKGVLFGIQAAARQFKKQGHGGKIINAA 136 (254)
T ss_pred CCEEEECCCcCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhCCCCeEEEEec
Confidence 7999999986421 1 22222 23455554 3344555555555445666554
No 311
>PRK06113 7-alpha-hydroxysteroid dehydrogenase; Validated
Probab=96.98 E-value=0.041 Score=48.92 Aligned_cols=115 Identities=18% Similarity=0.200 Sum_probs=64.5
Q ss_pred CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCc--hhHHhhhhcccCCceEEEEe-cCCC---HH-------hhh
Q 022947 46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTNAVVRGFL-GQQQ---LE-------DAL 112 (289)
Q Consensus 46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~--~g~~~DL~~~~~~~~v~~~~-~t~d---~~-------eal 112 (289)
.++|.|+|++|.+|..++..|+..|. +++++|.+.. .....++.+.. .++..+. +-.+ .. +.+
T Consensus 11 ~k~vlVtG~s~gIG~~la~~l~~~G~--~vv~~~r~~~~~~~~~~~l~~~~--~~~~~~~~D~~~~~~i~~~~~~~~~~~ 86 (255)
T PRK06113 11 GKCAIITGAGAGIGKEIAITFATAGA--SVVVSDINADAANHVVDEIQQLG--GQAFACRCDITSEQELSALADFALSKL 86 (255)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCC--eEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEccCCCHHHHHHHHHHHHHHc
Confidence 46899999999999999999999997 8999987652 11222332211 1111110 1111 11 223
Q ss_pred CCCCEEEEcCCCCCC--CCCchh---hHHHhhHHHHHHHHHHHHHh---CCCcEEEEecC
Q 022947 113 TGMDIVIIPAGVPRK--PGMTRD---DLFNINAGIVKTLCEGIAKC---CPKAIVNLISN 164 (289)
Q Consensus 113 ~~aDiVIitag~~~~--~g~~r~---d~~~~N~~i~~~i~~~i~~~---~p~aiviv~tN 164 (289)
...|++|+++|.... ...+.. +.+..|+.....+.+.+..+ ...+.++++|.
T Consensus 87 ~~~d~li~~ag~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~isS 146 (255)
T PRK06113 87 GKVDILVNNAGGGGPKPFDMPMADFRRAYELNVFSFFHLSQLVAPEMEKNGGGVILTITS 146 (255)
T ss_pred CCCCEEEECCCCCCCCCCCCCHHHHHHHHHHhhhhHHHHHHHHHHHHHhcCCcEEEEEec
Confidence 467999999986321 122222 23566766555555554422 22345555554
No 312
>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional
Probab=96.98 E-value=0.0076 Score=56.46 Aligned_cols=91 Identities=18% Similarity=0.259 Sum_probs=60.2
Q ss_pred CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchhHHhhhhcccCCceEEEEecCCCHHhhhCCCCEEEEcCCCC
Q 022947 46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVP 125 (289)
Q Consensus 46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~eal~~aDiVIitag~~ 125 (289)
.++|+|+|. |.+|+.++..|...|. +|..+|...... .... . +....++++.+++||+|+++....
T Consensus 136 g~tvgIvG~-G~IG~~vA~~l~afG~--~V~~~~~~~~~~--~~~~------~---~~~~~~l~e~l~~aDvvv~~lPlt 201 (312)
T PRK15469 136 DFTIGILGA-GVLGSKVAQSLQTWGF--PLRCWSRSRKSW--PGVQ------S---FAGREELSAFLSQTRVLINLLPNT 201 (312)
T ss_pred CCEEEEECC-CHHHHHHHHHHHHCCC--EEEEEeCCCCCC--CCce------e---ecccccHHHHHhcCCEEEECCCCC
Confidence 469999998 9999999999998887 899999754110 0000 0 001235789999999999985311
Q ss_pred CCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEec
Q 022947 126 RKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLIS 163 (289)
Q Consensus 126 ~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~aiviv~t 163 (289)
..+..++. .+.+.+..|.+++|+++
T Consensus 202 -----------~~T~~li~--~~~l~~mk~ga~lIN~a 226 (312)
T PRK15469 202 -----------PETVGIIN--QQLLEQLPDGAYLLNLA 226 (312)
T ss_pred -----------HHHHHHhH--HHHHhcCCCCcEEEECC
Confidence 11222222 33455556899999985
No 313
>COG1712 Predicted dinucleotide-utilizing enzyme [General function prediction only]
Probab=96.98 E-value=0.0065 Score=54.14 Aligned_cols=96 Identities=19% Similarity=0.302 Sum_probs=66.7
Q ss_pred CEEEEEcCCCccHHHHHHHHHhCC-CccEEEEEeCCCchhHHhhhhcccCCceEEEEecCCCHHhhhCCCCEEEEcCCCC
Q 022947 47 FKVAVLGAAGGIGQPLAMLMKINP-LVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVP 125 (289)
Q Consensus 47 ~KI~IIGaaG~VGs~la~~L~~~g-~~~eI~LvD~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~eal~~aDiVIitag~~ 125 (289)
+||+|||+ |.+|..+...+.... -+.-+.++|.+..+ +.++......+. .+++.+.+.+.|++|.+|+
T Consensus 1 l~vgiVGc-GaIG~~l~e~v~~~~~~~e~v~v~D~~~ek--~~~~~~~~~~~~------~s~ide~~~~~DlvVEaAS-- 69 (255)
T COG1712 1 LKVGIVGC-GAIGKFLLELVRDGRVDFELVAVYDRDEEK--AKELEASVGRRC------VSDIDELIAEVDLVVEAAS-- 69 (255)
T ss_pred CeEEEEec-cHHHHHHHHHHhcCCcceeEEEEecCCHHH--HHHHHhhcCCCc------cccHHHHhhccceeeeeCC--
Confidence 58999998 999999987776553 35667888887532 233333221111 1356677799999999974
Q ss_pred CCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecCCCc
Q 022947 126 RKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVN 167 (289)
Q Consensus 126 ~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~aiviv~tNPvd 167 (289)
.+.+++++.++-+.+.|.+|+-++-=+|
T Consensus 70 --------------~~Av~e~~~~~L~~g~d~iV~SVGALad 97 (255)
T COG1712 70 --------------PEAVREYVPKILKAGIDVIVMSVGALAD 97 (255)
T ss_pred --------------HHHHHHHhHHHHhcCCCEEEEechhccC
Confidence 5678888888888888888876654444
No 314
>PRK07035 short chain dehydrogenase; Provisional
Probab=96.98 E-value=0.012 Score=52.14 Aligned_cols=34 Identities=24% Similarity=0.212 Sum_probs=31.1
Q ss_pred CEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCC
Q 022947 47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN 82 (289)
Q Consensus 47 ~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~ 82 (289)
++|.|+|++|.+|..++..|+..|. .|+++|++.
T Consensus 9 k~vlItGas~gIG~~l~~~l~~~G~--~Vi~~~r~~ 42 (252)
T PRK07035 9 KIALVTGASRGIGEAIAKLLAQQGA--HVIVSSRKL 42 (252)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCC--EEEEEeCCH
Confidence 4799999999999999999999997 899999875
No 315
>COG1091 RfbD dTDP-4-dehydrorhamnose reductase [Cell envelope biogenesis, outer membrane]
Probab=96.98 E-value=0.0043 Score=57.20 Aligned_cols=203 Identities=18% Similarity=0.196 Sum_probs=110.1
Q ss_pred CEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchhHHhhhhcccCCceEEEEecCCCHHhhhC--CCCEEEEcCCC
Q 022947 47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALT--GMDIVIIPAGV 124 (289)
Q Consensus 47 ~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~eal~--~aDiVIitag~ 124 (289)
|||.|+|++|++|+.+...|. .+. +|+-.|..+ +|+.+.. .+.+.++ .-|+||.||..
T Consensus 1 M~iLi~G~~GqLG~~L~~~l~-~~~--~v~a~~~~~-----~Ditd~~------------~v~~~i~~~~PDvVIn~AAy 60 (281)
T COG1091 1 MKILITGANGQLGTELRRALP-GEF--EVIATDRAE-----LDITDPD------------AVLEVIRETRPDVVINAAAY 60 (281)
T ss_pred CcEEEEcCCChHHHHHHHHhC-CCc--eEEeccCcc-----ccccChH------------HHHHHHHhhCCCEEEECccc
Confidence 579999999999999988776 444 777777643 4444432 1334455 45999999986
Q ss_pred CCC--CCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEec-CCC--ccc-HHHHHHHHHHhCCCCCCcEEEeeeccHHH
Q 022947 125 PRK--PGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLIS-NPV--NST-VPIAAEVFKKVGTYDPKRLLGVTMLDVVR 198 (289)
Q Consensus 125 ~~~--~g~~r~d~~~~N~~i~~~i~~~i~~~~p~aiviv~t-NPv--d~~-t~~~~~~~~~~~~~~~~kviG~t~lds~R 198 (289)
..- ...+++.-+..|......+++...+++ +++|.+| --| ..- .+ +++.---.|-.+.|-+.+-...
T Consensus 61 t~vD~aE~~~e~A~~vNa~~~~~lA~aa~~~g--a~lVhiSTDyVFDG~~~~~-----Y~E~D~~~P~nvYG~sKl~GE~ 133 (281)
T COG1091 61 TAVDKAESEPELAFAVNATGAENLARAAAEVG--ARLVHISTDYVFDGEKGGP-----YKETDTPNPLNVYGRSKLAGEE 133 (281)
T ss_pred cccccccCCHHHHHHhHHHHHHHHHHHHHHhC--CeEEEeecceEecCCCCCC-----CCCCCCCCChhhhhHHHHHHHH
Confidence 432 233456667889999999999988874 4444443 222 000 00 0000013345566665443221
Q ss_pred HHHHHHHHcCCCCccee-eeEEcccCCCeeeeecccccCCC-----------CCChhhHHHHHHHHHhhhHH--HhhhcC
Q 022947 199 ANTFVAEVLGLDPREVD-VPVVGGHAGVTILPLLSQVKPSC-----------SLTPTEIDYLTDRIQNGGTE--VVEAKT 264 (289)
Q Consensus 199 ~~~~lA~~l~v~~~~V~-~~V~G~hg~~~~vp~~S~~~v~~-----------~~~~~~~~~i~~~v~~~g~~--i~~~k~ 264 (289)
..+..+-..-=++ .+|.|++|.+...+.+..+.-+. +.+-.++.+.+.++-....+ ++.+-
T Consensus 134 ----~v~~~~~~~~I~Rtswv~g~~g~nFv~tml~la~~~~~l~vv~Dq~gsPt~~~dlA~~i~~ll~~~~~~~~yH~~- 208 (281)
T COG1091 134 ----AVRAAGPRHLILRTSWVYGEYGNNFVKTMLRLAKEGKELKVVDDQYGSPTYTEDLADAILELLEKEKEGGVYHLV- 208 (281)
T ss_pred ----HHHHhCCCEEEEEeeeeecCCCCCHHHHHHHHhhcCCceEEECCeeeCCccHHHHHHHHHHHHhccccCcEEEEe-
Confidence 1222221222224 88999999732234455444321 22333443333332222211 33321
Q ss_pred CCC-cchHHHHHHHHHHH
Q 022947 265 GAG-SATLSMCRHMLLPS 281 (289)
Q Consensus 265 g~g-~t~~s~A~a~~~~~ 281 (289)
+.| ++.|-.|..+.+..
T Consensus 209 ~~g~~Swydfa~~I~~~~ 226 (281)
T COG1091 209 NSGECSWYEFAKAIFEEA 226 (281)
T ss_pred CCCcccHHHHHHHHHHHh
Confidence 333 36777777777654
No 316
>COG0345 ProC Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism]
Probab=96.97 E-value=0.0086 Score=54.87 Aligned_cols=97 Identities=16% Similarity=0.228 Sum_probs=64.4
Q ss_pred CCEEEEEcCCCccHHHHHHHHHhCC-C-ccEEEEEeCCCchhHHhhhhcccCCceEEEEecCCCHHhhhCCCCEEEEcCC
Q 022947 46 GFKVAVLGAAGGIGQPLAMLMKINP-L-VSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAG 123 (289)
Q Consensus 46 ~~KI~IIGaaG~VGs~la~~L~~~g-~-~~eI~LvD~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~eal~~aDiVIitag 123 (289)
++||++||+ |.+|..++..|...+ + ..+|+..|+++... .++.... . +.. +++..++...+|+||++.
T Consensus 1 ~~~IgfIG~-G~Mg~Ai~~gl~~~g~~~~~~I~v~~~~~e~~--~~l~~~~--g-~~~---~~~~~~~~~~advv~Lav- 70 (266)
T COG0345 1 MMKIGFIGA-GNMGEAILSGLLKSGALPPEEIIVTNRSEEKR--AALAAEY--G-VVT---TTDNQEAVEEADVVFLAV- 70 (266)
T ss_pred CceEEEEcc-CHHHHHHHHHHHhcCCCCcceEEEeCCCHHHH--HHHHHHc--C-Ccc---cCcHHHHHhhCCEEEEEe-
Confidence 479999999 999999999999888 2 35888887765221 1233221 1 111 235568889999999986
Q ss_pred CCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecCCCc
Q 022947 124 VPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVN 167 (289)
Q Consensus 124 ~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~aiviv~tNPvd 167 (289)
|| ..+.++++.++...++-+||-+.=.+.
T Consensus 71 ---KP------------q~~~~vl~~l~~~~~~~lvISiaAGv~ 99 (266)
T COG0345 71 ---KP------------QDLEEVLSKLKPLTKDKLVISIAAGVS 99 (266)
T ss_pred ---Ch------------HhHHHHHHHhhcccCCCEEEEEeCCCC
Confidence 33 236667777776445666666555553
No 317
>PRK07577 short chain dehydrogenase; Provisional
Probab=96.97 E-value=0.0052 Score=53.71 Aligned_cols=35 Identities=23% Similarity=0.137 Sum_probs=31.5
Q ss_pred CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCC
Q 022947 46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN 82 (289)
Q Consensus 46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~ 82 (289)
.++|.|+|++|.+|..++..|+..|. +|++++++.
T Consensus 3 ~k~vlItG~s~~iG~~ia~~l~~~G~--~v~~~~r~~ 37 (234)
T PRK07577 3 SRTVLVTGATKGIGLALSLRLANLGH--QVIGIARSA 37 (234)
T ss_pred CCEEEEECCCCcHHHHHHHHHHHCCC--EEEEEeCCc
Confidence 35899999999999999999999997 899999875
No 318
>PRK08277 D-mannonate oxidoreductase; Provisional
Probab=96.96 E-value=0.028 Score=50.67 Aligned_cols=35 Identities=17% Similarity=0.234 Sum_probs=31.6
Q ss_pred CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCC
Q 022947 46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN 82 (289)
Q Consensus 46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~ 82 (289)
.+++.|+||+|.+|..++..|+..|. +|+++|++.
T Consensus 10 ~k~vlVtGas~giG~~ia~~l~~~G~--~V~~~~r~~ 44 (278)
T PRK08277 10 GKVAVITGGGGVLGGAMAKELARAGA--KVAILDRNQ 44 (278)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCC--EEEEEeCCH
Confidence 45899999999999999999999998 899999875
No 319
>PRK06947 glucose-1-dehydrogenase; Provisional
Probab=96.96 E-value=0.019 Score=50.70 Aligned_cols=33 Identities=24% Similarity=0.274 Sum_probs=28.3
Q ss_pred CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeC
Q 022947 46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDV 80 (289)
Q Consensus 46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~ 80 (289)
+++|.|+||+|.+|+.++..|+..|. +|++.+.
T Consensus 2 ~k~ilItGas~giG~~la~~l~~~g~--~v~~~~~ 34 (248)
T PRK06947 2 RKVVLITGASRGIGRATAVLAAARGW--SVGINYA 34 (248)
T ss_pred CcEEEEeCCCCcHHHHHHHHHHHCCC--EEEEEeC
Confidence 45899999999999999999999987 7777653
No 320
>PLN02780 ketoreductase/ oxidoreductase
Probab=96.96 E-value=0.0093 Score=55.80 Aligned_cols=116 Identities=18% Similarity=0.228 Sum_probs=65.0
Q ss_pred CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCC--chhHHhhhhcccCCceEEEE--ecCCC-------HHhhhC-
Q 022947 46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTNAVVRGF--LGQQQ-------LEDALT- 113 (289)
Q Consensus 46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~--~~g~~~DL~~~~~~~~v~~~--~~t~d-------~~eal~- 113 (289)
.+.+.|+||+|.+|..++..|+..|. +|+++++++ .+....++........+..+ ..+++ +.+.+.
T Consensus 53 g~~~lITGAs~GIG~alA~~La~~G~--~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~~~Dl~~~~~~~~~~l~~~~~~ 130 (320)
T PLN02780 53 GSWALVTGPTDGIGKGFAFQLARKGL--NLVLVARNPDKLKDVSDSIQSKYSKTQIKTVVVDFSGDIDEGVKRIKETIEG 130 (320)
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCC--CEEEEECCHHHHHHHHHHHHHHCCCcEEEEEEEECCCCcHHHHHHHHHHhcC
Confidence 35899999999999999999999997 899999986 22223334321101122111 11111 122333
Q ss_pred -CCCEEEEcCCCCCC---C--CCch---hhHHHhhHHHHHHHH----HHHHHhCCCcEEEEecC
Q 022947 114 -GMDIVIIPAGVPRK---P--GMTR---DDLFNINAGIVKTLC----EGIAKCCPKAIVNLISN 164 (289)
Q Consensus 114 -~aDiVIitag~~~~---~--g~~r---~d~~~~N~~i~~~i~----~~i~~~~p~aiviv~tN 164 (289)
+.|++|..||.... + ..+. .+.+..|+.....+. +.+.+. ..+.|+++|.
T Consensus 131 ~didilVnnAG~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~lp~m~~~-~~g~IV~iSS 193 (320)
T PLN02780 131 LDVGVLINNVGVSYPYARFFHEVDEELLKNLIKVNVEGTTKVTQAVLPGMLKR-KKGAIINIGS 193 (320)
T ss_pred CCccEEEEecCcCCCCCcccccCCHHHHHHHHHHhHHHHHHHHHHHHHHHHhc-CCcEEEEEec
Confidence 45599999987421 1 1111 234566665444444 444433 3455666554
No 321
>PRK12744 short chain dehydrogenase; Provisional
Probab=96.96 E-value=0.029 Score=49.97 Aligned_cols=152 Identities=14% Similarity=0.113 Sum_probs=77.5
Q ss_pred CEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCC--chhH----HhhhhcccCCceEEEEe-cCCC---HHhh-----
Q 022947 47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGV----TADISHMDTNAVVRGFL-GQQQ---LEDA----- 111 (289)
Q Consensus 47 ~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~--~~g~----~~DL~~~~~~~~v~~~~-~t~d---~~ea----- 111 (289)
+++.|+|++|.+|..++..|+..|. ++++++.+. .... ..++.... .++..+. +-++ .++.
T Consensus 9 k~vlItGa~~gIG~~~a~~l~~~G~--~vv~i~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~D~~~~~~~~~~~~~~~ 84 (257)
T PRK12744 9 KVVLIAGGAKNLGGLIARDLAAQGA--KAVAIHYNSAASKADAEETVAAVKAAG--AKAVAFQADLTTAAAVEKLFDDAK 84 (257)
T ss_pred cEEEEECCCchHHHHHHHHHHHCCC--cEEEEecCCccchHHHHHHHHHHHHhC--CcEEEEecCcCCHHHHHHHHHHHH
Confidence 5899999999999999999999887 766666432 1111 11222111 1222111 1112 2222
Q ss_pred --hCCCCEEEEcCCCCCCC---CCc---hhhHHHhhHHHHHHHHHHHHHhC-CCcEEEEe-cCCCcccHHHHHHHHHHhC
Q 022947 112 --LTGMDIVIIPAGVPRKP---GMT---RDDLFNINAGIVKTLCEGIAKCC-PKAIVNLI-SNPVNSTVPIAAEVFKKVG 181 (289)
Q Consensus 112 --l~~aDiVIitag~~~~~---g~~---r~d~~~~N~~i~~~i~~~i~~~~-p~aiviv~-tNPvd~~t~~~~~~~~~~~ 181 (289)
+...|++|+++|..... ..+ -...+..|+.....+++.+.+.. +.+.++++ +......
T Consensus 85 ~~~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~~iv~~~ss~~~~~------------ 152 (257)
T PRK12744 85 AAFGRPDIAINTVGKVLKKPIVEISEAEYDEMFAVNSKSAFFFIKEAGRHLNDNGKIVTLVTSLLGAF------------ 152 (257)
T ss_pred HhhCCCCEEEECCcccCCCCcccCCHHHHHHHHhhhhhHHHHHHHHHHHhhccCCCEEEEecchhccc------------
Confidence 24689999999864211 111 22345567665555555554332 33444433 3222110
Q ss_pred CCCCCcEEEeeeccHHHHHHHHHHHcCCCCcceeee
Q 022947 182 TYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVP 217 (289)
Q Consensus 182 ~~~~~kviG~t~lds~R~~~~lA~~l~v~~~~V~~~ 217 (289)
.|....++.+......+-+.++++++ +..|++.
T Consensus 153 -~~~~~~Y~~sK~a~~~~~~~la~e~~--~~~i~v~ 185 (257)
T PRK12744 153 -TPFYSAYAGSKAPVEHFTRAASKEFG--ARGISVT 185 (257)
T ss_pred -CCCcccchhhHHHHHHHHHHHHHHhC--cCceEEE
Confidence 12223345544334456677788775 3344433
No 322
>PRK06550 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=96.95 E-value=0.013 Score=51.23 Aligned_cols=108 Identities=20% Similarity=0.183 Sum_probs=62.4
Q ss_pred CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchhHHhhhhcccCCceEEEEec-C----CCHHhhhCCCCEEEE
Q 022947 46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLG-Q----QQLEDALTGMDIVII 120 (289)
Q Consensus 46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g~~~DL~~~~~~~~v~~~~~-t----~d~~eal~~aDiVIi 120 (289)
.+++.|+|++|.+|..++..|++.|. +|+++|++.... .. ..+..+.. - ....+.+...|++|.
T Consensus 5 ~k~~lVtGas~~iG~~ia~~l~~~G~--~v~~~~r~~~~~----~~-----~~~~~~~~D~~~~~~~~~~~~~~id~lv~ 73 (235)
T PRK06550 5 TKTVLITGAASGIGLAQARAFLAQGA--QVYGVDKQDKPD----LS-----GNFHFLQLDLSDDLEPLFDWVPSVDILCN 73 (235)
T ss_pred CCEEEEcCCCchHHHHHHHHHHHCCC--EEEEEeCCcccc----cC-----CcEEEEECChHHHHHHHHHhhCCCCEEEE
Confidence 35899999999999999999999997 899999865211 00 01111100 0 111233567899999
Q ss_pred cCCCCCC--C--CCch---hhHHHhhHHHHHHHHHHHHHh---CCCcEEEEecC
Q 022947 121 PAGVPRK--P--GMTR---DDLFNINAGIVKTLCEGIAKC---CPKAIVNLISN 164 (289)
Q Consensus 121 tag~~~~--~--g~~r---~d~~~~N~~i~~~i~~~i~~~---~p~aiviv~tN 164 (289)
++|.... + ..+. ...+..|+.....+.+.+... .+.+.+++++.
T Consensus 74 ~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~sS 127 (235)
T PRK06550 74 TAGILDDYKPLLDTSLEEWQHIFDTNLTSTFLLTRAYLPQMLERKSGIIINMCS 127 (235)
T ss_pred CCCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEEcC
Confidence 9986421 1 1111 234566665544444444322 23355655553
No 323
>PRK09186 flagellin modification protein A; Provisional
Probab=96.95 E-value=0.015 Score=51.55 Aligned_cols=36 Identities=22% Similarity=0.253 Sum_probs=32.0
Q ss_pred CCCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCC
Q 022947 45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN 82 (289)
Q Consensus 45 ~~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~ 82 (289)
+.++|.|+||+|.+|..++..|+..|. +|++.++++
T Consensus 3 ~~k~vlItGas~giG~~~a~~l~~~g~--~v~~~~r~~ 38 (256)
T PRK09186 3 KGKTILITGAGGLIGSALVKAILEAGG--IVIAADIDK 38 (256)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCC--EEEEEecCh
Confidence 346899999999999999999999997 899998865
No 324
>PRK07060 short chain dehydrogenase; Provisional
Probab=96.94 E-value=0.0088 Score=52.56 Aligned_cols=115 Identities=19% Similarity=0.191 Sum_probs=64.9
Q ss_pred CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchhHHhhhhcccCCceEE-EEecCCCHHhhh---CCCCEEEEc
Q 022947 46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVR-GFLGQQQLEDAL---TGMDIVIIP 121 (289)
Q Consensus 46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g~~~DL~~~~~~~~v~-~~~~t~d~~eal---~~aDiVIit 121 (289)
.+++.|+|++|.+|..++..|+..|. +|++++++... ..++........+. ......++.+.+ ...|+||.+
T Consensus 9 ~~~~lItGa~g~iG~~~a~~l~~~g~--~V~~~~r~~~~--~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~d~vi~~ 84 (245)
T PRK07060 9 GKSVLVTGASSGIGRACAVALAQRGA--RVVAAARNAAA--LDRLAGETGCEPLRLDVGDDAAIRAALAAAGAFDGLVNC 84 (245)
T ss_pred CCEEEEeCCcchHHHHHHHHHHHCCC--EEEEEeCCHHH--HHHHHHHhCCeEEEecCCCHHHHHHHHHHhCCCCEEEEC
Confidence 45899999999999999999999997 89999986521 11121110000111 111111222333 358999999
Q ss_pred CCCCCCC---CCc---hhhHHHhhHHHHHHHHHHHHHh----CCCcEEEEecC
Q 022947 122 AGVPRKP---GMT---RDDLFNINAGIVKTLCEGIAKC----CPKAIVNLISN 164 (289)
Q Consensus 122 ag~~~~~---g~~---r~d~~~~N~~i~~~i~~~i~~~----~p~aiviv~tN 164 (289)
+|..... ..+ -.+.+..|+.....+.+.+.+. +..+.++++|.
T Consensus 85 ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~iv~~sS 137 (245)
T PRK07060 85 AGIASLESALDMTAEGFDRVMAVNARGAALVARHVARAMIAAGRGGSIVNVSS 137 (245)
T ss_pred CCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCcEEEEEcc
Confidence 9864321 111 1234456766665565555543 22356666553
No 325
>PRK05855 short chain dehydrogenase; Validated
Probab=96.94 E-value=0.012 Score=58.32 Aligned_cols=117 Identities=19% Similarity=0.187 Sum_probs=67.8
Q ss_pred CCCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCc--hhHHhhhhcccCCceEEEEe-cCCCH---Hhh-------
Q 022947 45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTNAVVRGFL-GQQQL---EDA------- 111 (289)
Q Consensus 45 ~~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~--~g~~~DL~~~~~~~~v~~~~-~t~d~---~ea------- 111 (289)
+.+++.|+||+|.+|..++..|+..|. +|++++++.. .....++.... ..+..+. +-+|. ++.
T Consensus 314 ~~~~~lv~G~s~giG~~~a~~l~~~G~--~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dv~~~~~~~~~~~~~~~~ 389 (582)
T PRK05855 314 SGKLVVVTGAGSGIGRETALAFAREGA--EVVASDIDEAAAERTAELIRAAG--AVAHAYRVDVSDADAMEAFAEWVRAE 389 (582)
T ss_pred CCCEEEEECCcCHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC--CeEEEEEcCCCCHHHHHHHHHHHHHh
Confidence 356899999999999999999999998 8999998762 22222232211 1111111 11121 111
Q ss_pred hCCCCEEEEcCCCCCCC---CCch---hhHHHhhHHHH----HHHHHHHHHhCCCcEEEEecCC
Q 022947 112 LTGMDIVIIPAGVPRKP---GMTR---DDLFNINAGIV----KTLCEGIAKCCPKAIVNLISNP 165 (289)
Q Consensus 112 l~~aDiVIitag~~~~~---g~~r---~d~~~~N~~i~----~~i~~~i~~~~p~aiviv~tNP 165 (289)
+...|++|.+||..... ..+. ...+..|+... +.+.+.+.+....+.|+++|.-
T Consensus 390 ~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~~~g~iv~~sS~ 453 (582)
T PRK05855 390 HGVPDIVVNNAGIGMAGGFLDTSAEDWDRVLDVNLWGVIHGCRLFGRQMVERGTGGHIVNVASA 453 (582)
T ss_pred cCCCcEEEECCccCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCcEEEEECCh
Confidence 23579999999975321 1111 22345665444 4445555555555677776643
No 326
>PRK05867 short chain dehydrogenase; Provisional
Probab=96.93 E-value=0.01 Score=52.87 Aligned_cols=114 Identities=19% Similarity=0.220 Sum_probs=64.0
Q ss_pred CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCc--hhHHhhhhcccCCceEEEEe-cCCC---HHh-------hh
Q 022947 46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTNAVVRGFL-GQQQ---LED-------AL 112 (289)
Q Consensus 46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~--~g~~~DL~~~~~~~~v~~~~-~t~d---~~e-------al 112 (289)
.+++.|+|++|.+|..++..|+..|. +|++.+++.. +....++.... .++..+. +-+| ..+ .+
T Consensus 9 ~k~vlVtGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~ 84 (253)
T PRK05867 9 GKRALITGASTGIGKRVALAYVEAGA--QVAIAARHLDALEKLADEIGTSG--GKVVPVCCDVSQHQQVTSMLDQVTAEL 84 (253)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCC--EEEEEcCCHHHHHHHHHHHHhcC--CeEEEEEccCCCHHHHHHHHHHHHHHh
Confidence 35799999999999999999999997 8999998762 22222222211 1222111 1112 212 23
Q ss_pred CCCCEEEEcCCCCCCC---CCch---hhHHHhhHHHH----HHHHHHHHHhCCCcEEEEec
Q 022947 113 TGMDIVIIPAGVPRKP---GMTR---DDLFNINAGIV----KTLCEGIAKCCPKAIVNLIS 163 (289)
Q Consensus 113 ~~aDiVIitag~~~~~---g~~r---~d~~~~N~~i~----~~i~~~i~~~~p~aiviv~t 163 (289)
...|++|+++|..... ..+. .+.+..|+... +.+.+.+.+....+.+++++
T Consensus 85 g~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~g~iv~~s 145 (253)
T PRK05867 85 GGIDIAVCNAGIITVTPMLDMPLEEFQRLQNTNVTGVFLTAQAAAKAMVKQGQGGVIINTA 145 (253)
T ss_pred CCCCEEEECCCCCCCCChhhCCHHHHHHHHHhcchhHHHHHHHHHHHHHhcCCCcEEEEEC
Confidence 4789999999864321 1111 22345565544 34444444433345566554
No 327
>PRK14806 bifunctional cyclohexadienyl dehydrogenase/ 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional
Probab=96.92 E-value=0.007 Score=62.83 Aligned_cols=92 Identities=21% Similarity=0.341 Sum_probs=60.4
Q ss_pred CEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCch-hHHhhhhcccCCceEEEEecCCCHHhhhCCCCEEEEcCCCC
Q 022947 47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP-GVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVP 125 (289)
Q Consensus 47 ~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~-g~~~DL~~~~~~~~v~~~~~t~d~~eal~~aDiVIitag~~ 125 (289)
+||+|||+ |.+|..++..+...|+..+|+.+|+++.. ..+.++. . ... ..+++.++++++|+||++...
T Consensus 4 ~~I~IIG~-G~mG~ala~~l~~~G~~~~V~~~d~~~~~~~~a~~~g---~--~~~---~~~~~~~~~~~aDvVilavp~- 73 (735)
T PRK14806 4 GRVVVIGL-GLIGGSFAKALRERGLAREVVAVDRRAKSLELAVSLG---V--IDR---GEEDLAEAVSGADVIVLAVPV- 73 (735)
T ss_pred cEEEEEee-CHHHHHHHHHHHhcCCCCEEEEEECChhHHHHHHHCC---C--CCc---ccCCHHHHhcCCCEEEECCCH-
Confidence 58999998 99999999999988854479999987622 1122211 0 000 123566789999999998531
Q ss_pred CCCCCchhhHHHhhHHHHHHHHHHHHHhC-CCcEEEEec
Q 022947 126 RKPGMTRDDLFNINAGIVKTLCEGIAKCC-PKAIVNLIS 163 (289)
Q Consensus 126 ~~~g~~r~d~~~~N~~i~~~i~~~i~~~~-p~aiviv~t 163 (289)
..+.++++.+.++. ++.+|+.++
T Consensus 74 ---------------~~~~~vl~~l~~~~~~~~ii~d~~ 97 (735)
T PRK14806 74 ---------------LAMEKVLADLKPLLSEHAIVTDVG 97 (735)
T ss_pred ---------------HHHHHHHHHHHHhcCCCcEEEEcC
Confidence 23456666666654 555554443
No 328
>PRK05884 short chain dehydrogenase; Provisional
Probab=96.92 E-value=0.0053 Score=54.01 Aligned_cols=34 Identities=18% Similarity=0.223 Sum_probs=31.0
Q ss_pred CEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCC
Q 022947 47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN 82 (289)
Q Consensus 47 ~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~ 82 (289)
||+.|+||+|.+|..++..|+..|. +|+++++++
T Consensus 1 m~vlItGas~giG~~ia~~l~~~g~--~v~~~~r~~ 34 (223)
T PRK05884 1 VEVLVTGGDTDLGRTIAEGFRNDGH--KVTLVGARR 34 (223)
T ss_pred CeEEEEeCCchHHHHHHHHHHHCCC--EEEEEeCCH
Confidence 5899999999999999999999997 899999875
No 329
>PRK06949 short chain dehydrogenase; Provisional
Probab=96.91 E-value=0.012 Score=52.17 Aligned_cols=35 Identities=23% Similarity=0.238 Sum_probs=31.6
Q ss_pred CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCC
Q 022947 46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN 82 (289)
Q Consensus 46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~ 82 (289)
.++|.|+||+|.+|+.++..|+..|. +|+++++++
T Consensus 9 ~k~ilItGasg~IG~~~a~~l~~~G~--~Vi~~~r~~ 43 (258)
T PRK06949 9 GKVALVTGASSGLGARFAQVLAQAGA--KVVLASRRV 43 (258)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEeCCH
Confidence 46899999999999999999999887 899998875
No 330
>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=96.90 E-value=0.0074 Score=52.87 Aligned_cols=35 Identities=23% Similarity=0.350 Sum_probs=31.7
Q ss_pred CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCC
Q 022947 46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN 82 (289)
Q Consensus 46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~ 82 (289)
.++|.|+|++|.+|+.++..|+..|. +|+++++++
T Consensus 5 ~~~vlItGa~g~iG~~~a~~l~~~G~--~V~~~~r~~ 39 (238)
T PRK05786 5 GKKVAIIGVSEGLGYAVAYFALKEGA--QVCINSRNE 39 (238)
T ss_pred CcEEEEECCCchHHHHHHHHHHHCCC--EEEEEeCCH
Confidence 35899999999999999999999998 899999876
No 331
>PRK05479 ketol-acid reductoisomerase; Provisional
Probab=96.90 E-value=0.0083 Score=56.63 Aligned_cols=67 Identities=18% Similarity=0.164 Sum_probs=46.6
Q ss_pred CCCCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchhHHhhhhcccCCceEEEEecCCCHHhhhCCCCEEEEcC
Q 022947 44 SPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPA 122 (289)
Q Consensus 44 ~~~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~eal~~aDiVIita 122 (289)
.+.+||+|||. |.+|.+++..|...|+ +|+..+.+.... .+..... .+.. .+..+++++||+|+++.
T Consensus 15 L~gktIgIIG~-GsmG~AlA~~L~~sG~--~Vvv~~r~~~~s--~~~A~~~---G~~~----~s~~eaa~~ADVVvLaV 81 (330)
T PRK05479 15 IKGKKVAIIGY-GSQGHAHALNLRDSGV--DVVVGLREGSKS--WKKAEAD---GFEV----LTVAEAAKWADVIMILL 81 (330)
T ss_pred hCCCEEEEEee-HHHHHHHHHHHHHCCC--EEEEEECCchhh--HHHHHHC---CCee----CCHHHHHhcCCEEEEcC
Confidence 34568999998 9999999999999998 888877654211 1111111 1111 25678999999999985
No 332
>PRK08936 glucose-1-dehydrogenase; Provisional
Probab=96.89 E-value=0.073 Score=47.48 Aligned_cols=115 Identities=15% Similarity=0.153 Sum_probs=64.3
Q ss_pred CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCc---hhHHhhhhcccCCceEEEE-ecCCCH---Hhh-------
Q 022947 46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT---PGVTADISHMDTNAVVRGF-LGQQQL---EDA------- 111 (289)
Q Consensus 46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~---~g~~~DL~~~~~~~~v~~~-~~t~d~---~ea------- 111 (289)
.+++.|+||+|.+|..++..|+..|. .+++...+.. .....++.... .++..+ .+.+|. .+.
T Consensus 7 ~k~~lItGa~~gIG~~ia~~l~~~G~--~vvi~~~~~~~~~~~~~~~l~~~~--~~~~~~~~Dl~~~~~i~~~~~~~~~~ 82 (261)
T PRK08936 7 GKVVVITGGSTGLGRAMAVRFGKEKA--KVVINYRSDEEEANDVAEEIKKAG--GEAIAVKGDVTVESDVVNLIQTAVKE 82 (261)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHCCC--EEEEEeCCCHHHHHHHHHHHHHcC--CeEEEEEecCCCHHHHHHHHHHHHHH
Confidence 45899999999999999999999997 7777766431 11122232211 122111 011222 111
Q ss_pred hCCCCEEEEcCCCCCCC---CCchh---hHHHhhHH----HHHHHHHHHHHhCCCcEEEEecC
Q 022947 112 LTGMDIVIIPAGVPRKP---GMTRD---DLFNINAG----IVKTLCEGIAKCCPKAIVNLISN 164 (289)
Q Consensus 112 l~~aDiVIitag~~~~~---g~~r~---d~~~~N~~----i~~~i~~~i~~~~p~aiviv~tN 164 (289)
+...|++|+.+|..... ..+.. ..+..|+. ..+.+.+.+.+....+.++++|.
T Consensus 83 ~g~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~l~~~~~~~~~g~iv~~sS 145 (261)
T PRK08936 83 FGTLDVMINNAGIENAVPSHEMSLEDWNKVINTNLTGAFLGSREAIKYFVEHDIKGNIINMSS 145 (261)
T ss_pred cCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCcEEEEEcc
Confidence 23579999999864321 11111 23556644 33455566665555566666654
No 333
>COG1088 RfbB dTDP-D-glucose 4,6-dehydratase [Cell envelope biogenesis, outer membrane]
Probab=96.89 E-value=0.011 Score=54.75 Aligned_cols=168 Identities=17% Similarity=0.134 Sum_probs=95.0
Q ss_pred CEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchhH---HhhhhcccCCceEEE-EecCCCHHhhhC--CCCEEEE
Q 022947 47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGV---TADISHMDTNAVVRG-FLGQQQLEDALT--GMDIVII 120 (289)
Q Consensus 47 ~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g~---~~DL~~~~~~~~v~~-~~~t~d~~eal~--~aDiVIi 120 (289)
|++.|+|++||+|+++...+.....-.+|+.+|.-.-.|. ..++.+.....-++. +.....+.+.++ +.|.|+.
T Consensus 1 ~~iLVTGGaGFIGsnfvr~~~~~~~d~~v~~~DkLTYAgn~~~l~~~~~~~~~~fv~~DI~D~~~v~~~~~~~~~D~Vvh 80 (340)
T COG1088 1 MKILVTGGAGFIGSNFVRYILNKHPDDHVVNLDKLTYAGNLENLADVEDSPRYRFVQGDICDRELVDRLFKEYQPDAVVH 80 (340)
T ss_pred CcEEEecCcchHHHHHHHHHHhcCCCceEEEEecccccCCHHHHHhhhcCCCceEEeccccCHHHHHHHHHhcCCCeEEE
Confidence 5899999999999999987777665467888987551222 233444321112222 111122334455 6899999
Q ss_pred cCCCCC--CCCCchhhHHHhhHHHHHHHHHHHHHhCCC-cEEEEecCCCc-ccHHHHHHHHHHhCCCCCCcEEEeeeccH
Q 022947 121 PAGVPR--KPGMTRDDLFNINAGIVKTLCEGIAKCCPK-AIVNLISNPVN-STVPIAAEVFKKVGTYDPKRLLGVTMLDV 196 (289)
Q Consensus 121 tag~~~--~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~-aiviv~tNPvd-~~t~~~~~~~~~~~~~~~~kviG~t~lds 196 (289)
.|.-.- +.=..-.++++.|+-....+.+.++++... -++-+.|.-|= -+..- -..+-+.+.+.|+.-..-+.-.+
T Consensus 81 fAAESHVDRSI~~P~~Fi~TNv~GT~~LLEaar~~~~~frf~HISTDEVYG~l~~~-~~~FtE~tp~~PsSPYSASKAas 159 (340)
T COG1088 81 FAAESHVDRSIDGPAPFIQTNVVGTYTLLEAARKYWGKFRFHHISTDEVYGDLGLD-DDAFTETTPYNPSSPYSASKAAS 159 (340)
T ss_pred echhccccccccChhhhhhcchHHHHHHHHHHHHhcccceEEEeccccccccccCC-CCCcccCCCCCCCCCcchhhhhH
Confidence 875321 000112568889999999999999999754 34444443220 00000 00011234577776666543333
Q ss_pred HHHHHHHHHHcCCCCccee
Q 022947 197 VRANTFVAEVLGLDPREVD 215 (289)
Q Consensus 197 ~R~~~~lA~~l~v~~~~V~ 215 (289)
--|-+...+-+|++..-.+
T Consensus 160 D~lVray~~TYglp~~Itr 178 (340)
T COG1088 160 DLLVRAYVRTYGLPATITR 178 (340)
T ss_pred HHHHHHHHHHcCCceEEec
Confidence 3345555677787654444
No 334
>PRK06463 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=96.88 E-value=0.011 Score=52.66 Aligned_cols=115 Identities=11% Similarity=0.141 Sum_probs=63.2
Q ss_pred CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchhHHhhhhcccCCceEEEEecCCCHHhh-------hCCCCEE
Q 022947 46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDA-------LTGMDIV 118 (289)
Q Consensus 46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~ea-------l~~aDiV 118 (289)
.+++.|+||+|.+|..++..|+..|. +|++.+.... ....++.+..............+.+++ +...|++
T Consensus 7 ~k~~lItGas~gIG~~~a~~l~~~G~--~v~~~~~~~~-~~~~~l~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~id~l 83 (255)
T PRK06463 7 GKVALITGGTRGIGRAIAEAFLREGA--KVAVLYNSAE-NEAKELREKGVFTIKCDVGNRDQVKKSKEVVEKEFGRVDVL 83 (255)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHCCC--EEEEEeCCcH-HHHHHHHhCCCeEEEecCCCHHHHHHHHHHHHHHcCCCCEE
Confidence 35899999999999999999999997 7888765431 111122211100000001111112222 3468999
Q ss_pred EEcCCCCCCC---CCch---hhHHHhhHHH----HHHHHHHHHHhCCCcEEEEecC
Q 022947 119 IIPAGVPRKP---GMTR---DDLFNINAGI----VKTLCEGIAKCCPKAIVNLISN 164 (289)
Q Consensus 119 Iitag~~~~~---g~~r---~d~~~~N~~i----~~~i~~~i~~~~p~aiviv~tN 164 (289)
|.++|..... ..+. ...+..|+.. .+.+.+.+++. ..+.|+++|.
T Consensus 84 i~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~l~~~~~~-~~g~iv~isS 138 (255)
T PRK06463 84 VNNAGIMYLMPFEEFDEEKYNKMIKINLNGAIYTTYEFLPLLKLS-KNGAIVNIAS 138 (255)
T ss_pred EECCCcCCCCChhhCCHHHHHHHHhHhhHHHHHHHHHHHHHHHhc-CCcEEEEEcC
Confidence 9999874321 1121 2334556554 56666666543 3455666554
No 335
>PRK07904 short chain dehydrogenase; Provisional
Probab=96.88 E-value=0.016 Score=52.02 Aligned_cols=116 Identities=16% Similarity=0.147 Sum_probs=65.2
Q ss_pred CCCEEEEEcCCCccHHHHHHHHHhCC-CccEEEEEeCCCch---hHHhhhhcccCCceEEEE----ecCCCHHhhh----
Q 022947 45 PGFKVAVLGAAGGIGQPLAMLMKINP-LVSVLHLYDVVNTP---GVTADISHMDTNAVVRGF----LGQQQLEDAL---- 112 (289)
Q Consensus 45 ~~~KI~IIGaaG~VGs~la~~L~~~g-~~~eI~LvD~~~~~---g~~~DL~~~~~~~~v~~~----~~t~d~~eal---- 112 (289)
+.++|.|+||+|.+|..++..|+..| . .|+++++++.. ....++.... ..++..+ ....+.++.+
T Consensus 7 ~~~~vlItGas~giG~~la~~l~~~gg~--~V~~~~r~~~~~~~~~~~~l~~~~-~~~v~~~~~D~~~~~~~~~~~~~~~ 83 (253)
T PRK07904 7 NPQTILLLGGTSEIGLAICERYLKNAPA--RVVLAALPDDPRRDAAVAQMKAAG-ASSVEVIDFDALDTDSHPKVIDAAF 83 (253)
T ss_pred CCcEEEEEcCCcHHHHHHHHHHHhcCCC--eEEEEeCCcchhHHHHHHHHHhcC-CCceEEEEecCCChHHHHHHHHHHH
Confidence 45689999999999999999988875 5 89999987621 1223333211 1122221 1111211112
Q ss_pred --CCCCEEEEcCCCCCCCCCch------hhHHHhhHHH----HHHHHHHHHHhCCCcEEEEecC
Q 022947 113 --TGMDIVIIPAGVPRKPGMTR------DDLFNINAGI----VKTLCEGIAKCCPKAIVNLISN 164 (289)
Q Consensus 113 --~~aDiVIitag~~~~~g~~r------~d~~~~N~~i----~~~i~~~i~~~~p~aiviv~tN 164 (289)
.+.|++|.++|......... .+.+..|+.. .+.+.+.+.+... +.++++|.
T Consensus 84 ~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~l~~~~~~~~~-~~iv~isS 146 (253)
T PRK07904 84 AGGDVDVAIVAFGLLGDAEELWQNQRKAVQIAEINYTAAVSVGVLLGEKMRAQGF-GQIIAMSS 146 (253)
T ss_pred hcCCCCEEEEeeecCCchhhcccCHHHHHHHHHHHhHhHHHHHHHHHHHHHhcCC-ceEEEEec
Confidence 37999999988753221111 1235666543 3456666665543 45555543
No 336
>PRK09072 short chain dehydrogenase; Provisional
Probab=96.88 E-value=0.024 Score=50.72 Aligned_cols=115 Identities=22% Similarity=0.256 Sum_probs=65.6
Q ss_pred CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCc--hhHHhhhhcccCCceEEEEe-cCCCHH---hh------hC
Q 022947 46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTNAVVRGFL-GQQQLE---DA------LT 113 (289)
Q Consensus 46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~--~g~~~DL~~~~~~~~v~~~~-~t~d~~---ea------l~ 113 (289)
.++|.|+||+|.+|..++..|+.+|. +|+++++++. .....++.. ..++..+. +-.|.+ +. +.
T Consensus 5 ~~~vlItG~s~~iG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~---~~~~~~~~~D~~d~~~~~~~~~~~~~~~ 79 (263)
T PRK09072 5 DKRVLLTGASGGIGQALAEALAAAGA--RLLLVGRNAEKLEALAARLPY---PGRHRWVVADLTSEAGREAVLARAREMG 79 (263)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHhc---CCceEEEEccCCCHHHHHHHHHHHHhcC
Confidence 45899999999999999999999997 8999998752 111122211 11222211 111221 11 35
Q ss_pred CCCEEEEcCCCCCCC---CCc---hhhHHHhhHHHHHHHHHHHHHh---CCCcEEEEecCC
Q 022947 114 GMDIVIIPAGVPRKP---GMT---RDDLFNINAGIVKTLCEGIAKC---CPKAIVNLISNP 165 (289)
Q Consensus 114 ~aDiVIitag~~~~~---g~~---r~d~~~~N~~i~~~i~~~i~~~---~p~aiviv~tNP 165 (289)
..|++|.++|..... ..+ -.+.+..|+.....+.+.+.++ .+.+.+++++..
T Consensus 80 ~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~iv~isS~ 140 (263)
T PRK09072 80 GINVLINNAGVNHFALLEDQDPEAIERLLALNLTAPMQLTRALLPLLRAQPSAMVVNVGST 140 (263)
T ss_pred CCCEEEECCCCCCccccccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCEEEEecCh
Confidence 689999999864321 111 1234556766555555555432 233556665553
No 337
>cd00762 NAD_bind_malic_enz NAD(P) binding domain of malic enzyme. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glut
Probab=96.87 E-value=0.0028 Score=57.51 Aligned_cols=124 Identities=18% Similarity=0.163 Sum_probs=79.4
Q ss_pred CCEEEEEcCCCccHHHHHHHHHhCCCc---------cEEEEEeCCCc--hhHHhhhhcc--c--CCceEEEEecCCCHHh
Q 022947 46 GFKVAVLGAAGGIGQPLAMLMKINPLV---------SVLHLYDVVNT--PGVTADISHM--D--TNAVVRGFLGQQQLED 110 (289)
Q Consensus 46 ~~KI~IIGaaG~VGs~la~~L~~~g~~---------~eI~LvD~~~~--~g~~~DL~~~--~--~~~~v~~~~~t~d~~e 110 (289)
..||.|.|| |.-|..++..|...+.- .+++++|..-. .+. .|+... . .+.+-. ....++.|
T Consensus 25 d~riv~~GA-GsAg~gia~ll~~~~~~~Gls~e~A~~~i~~vD~~Gll~~~r-~~l~~~~~~~~~~~~~~--~~~~~L~e 100 (254)
T cd00762 25 EHKVLFNGA-GAAALGIANLIVXLXVKEGISKEEACKRIWXVDRKGLLVKNR-KETCPNEYHLARFANPE--RESGDLED 100 (254)
T ss_pred hcEEEEECc-CHHHHHHHHHHHHHHHhcCCCHHHHhccEEEECCCCeEeCCC-CccCHHHHHHHHHcCcc--cccCCHHH
Confidence 359999999 99999999877654321 38999998651 111 111110 0 000101 11247899
Q ss_pred hhC--CCCEEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecCCCc--ccHHHHHHHHHHhCCCCCC
Q 022947 111 ALT--GMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVN--STVPIAAEVFKKVGTYDPK 186 (289)
Q Consensus 111 al~--~aDiVIitag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~aiviv~tNPvd--~~t~~~~~~~~~~~~~~~~ 186 (289)
+++ ++|++|=+.+.+ | -+.+++.+.|.+++++.+|+-.|||.. -+++ +..++.+ +-+
T Consensus 101 av~~~kptvlIG~S~~~---g-----------~ft~evv~~Ma~~~~~PIIFaLSNPt~~aE~tp---e~a~~~t--~G~ 161 (254)
T cd00762 101 AVEAAKPDFLIGVSRVG---G-----------AFTPEVIRAXAEINERPVIFALSNPTSKAECTA---EEAYTAT--EGR 161 (254)
T ss_pred HHHhhCCCEEEEeCCCC---C-----------CCCHHHHHHHhhcCCCCEEEECCCcCCccccCH---HHHHhhc--CCC
Confidence 999 999988765544 2 235678889999999999999999987 5554 3344433 124
Q ss_pred cEEEee
Q 022947 187 RLLGVT 192 (289)
Q Consensus 187 kviG~t 192 (289)
.+|++.
T Consensus 162 ai~AtG 167 (254)
T cd00762 162 AIFASG 167 (254)
T ss_pred EEEEEC
Confidence 677774
No 338
>PRK07109 short chain dehydrogenase; Provisional
Probab=96.86 E-value=0.021 Score=53.60 Aligned_cols=114 Identities=13% Similarity=0.095 Sum_probs=64.4
Q ss_pred CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCc--hhHHhhhhcccCCceEEEEe-cCCC---HHhh-------h
Q 022947 46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTNAVVRGFL-GQQQ---LEDA-------L 112 (289)
Q Consensus 46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~--~g~~~DL~~~~~~~~v~~~~-~t~d---~~ea-------l 112 (289)
.++|.|+||+|.+|..++..|+..|. +|+++++++. .....++.... .++..+. +-+| .+++ +
T Consensus 8 ~k~vlITGas~gIG~~la~~la~~G~--~Vvl~~R~~~~l~~~~~~l~~~g--~~~~~v~~Dv~d~~~v~~~~~~~~~~~ 83 (334)
T PRK07109 8 RQVVVITGASAGVGRATARAFARRGA--KVVLLARGEEGLEALAAEIRAAG--GEALAVVADVADAEAVQAAADRAEEEL 83 (334)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHHcC--CcEEEEEecCCCHHHHHHHHHHHHHHC
Confidence 45899999999999999999999997 8999998752 22222332211 1221111 1112 2222 2
Q ss_pred CCCCEEEEcCCCCCCC---CCch---hhHHHhh----HHHHHHHHHHHHHhCCCcEEEEecC
Q 022947 113 TGMDIVIIPAGVPRKP---GMTR---DDLFNIN----AGIVKTLCEGIAKCCPKAIVNLISN 164 (289)
Q Consensus 113 ~~aDiVIitag~~~~~---g~~r---~d~~~~N----~~i~~~i~~~i~~~~p~aiviv~tN 164 (289)
...|++|.++|..... ..+. ...+..| +...+.+.+.+.+.. .+.|++++.
T Consensus 84 g~iD~lInnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~~~~~~-~g~iV~isS 144 (334)
T PRK07109 84 GPIDTWVNNAMVTVFGPFEDVTPEEFRRVTEVTYLGVVHGTLAALRHMRPRD-RGAIIQVGS 144 (334)
T ss_pred CCCCEEEECCCcCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcC-CcEEEEeCC
Confidence 4689999999864211 1111 1223344 344555666665542 355666554
No 339
>PRK06476 pyrroline-5-carboxylate reductase; Reviewed
Probab=96.86 E-value=0.0061 Score=55.12 Aligned_cols=68 Identities=18% Similarity=0.250 Sum_probs=44.9
Q ss_pred CEEEEEcCCCccHHHHHHHHHhCCC-ccEEEEEeCCCchhHHhhhhcccCCceEEEEecCCCHHhhhCCCCEEEEcC
Q 022947 47 FKVAVLGAAGGIGQPLAMLMKINPL-VSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPA 122 (289)
Q Consensus 47 ~KI~IIGaaG~VGs~la~~L~~~g~-~~eI~LvD~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~eal~~aDiVIita 122 (289)
|||+|||+ |.+|+.++..|...++ ..++.++|++... ..++.... ..+.. .++..+.++++|+||++.
T Consensus 1 m~IgiIG~-G~mG~aia~~L~~~g~~~~~i~v~~r~~~~--~~~l~~~~--~~~~~---~~~~~~~~~~aDvVilav 69 (258)
T PRK06476 1 MKIGFIGT-GAITEAMVTGLLTSPADVSEIIVSPRNAQI--AARLAERF--PKVRI---AKDNQAVVDRSDVVFLAV 69 (258)
T ss_pred CeEEEECc-CHHHHHHHHHHHhCCCChheEEEECCCHHH--HHHHHHHc--CCceE---eCCHHHHHHhCCEEEEEe
Confidence 58999998 9999999999988774 3456777765422 22222211 11222 235567789999999985
No 340
>PLN02503 fatty acyl-CoA reductase 2
Probab=96.86 E-value=0.014 Score=59.46 Aligned_cols=112 Identities=15% Similarity=0.078 Sum_probs=69.8
Q ss_pred CCCCCCEEEEEcCCCccHHHHHHHHHhCC-CccEEEEEeCCCc----hhHH-hhhhccc----------------CCceE
Q 022947 42 GGSPGFKVAVLGAAGGIGQPLAMLMKINP-LVSVLHLYDVVNT----PGVT-ADISHMD----------------TNAVV 99 (289)
Q Consensus 42 ~~~~~~KI~IIGaaG~VGs~la~~L~~~g-~~~eI~LvD~~~~----~g~~-~DL~~~~----------------~~~~v 99 (289)
+|-+.++|.|+||+||+|..++..|+..+ -..+|+++.+... .... .++.+.. ...++
T Consensus 115 ~f~~~k~VlVTGaTGFLGk~LlekLLr~~~~v~kIy~LvR~k~~~~a~eRl~~~l~~~~lf~~l~~~~g~~~~~~~~~Ki 194 (605)
T PLN02503 115 EFLRGKNFLITGATGFLAKVLIEKILRTNPDVGKIYLLIKAKDKEAAIERLKNEVIDAELFKCLQETHGKSYQSFMLSKL 194 (605)
T ss_pred hhhcCCEEEEcCCchHHHHHHHHHHHHhCCCCcEEEEEEecCCchhHHHHHHHHHhhhhhHHHHHHhcCccccccccccE
Confidence 34567899999999999999998888654 3568888877541 1111 1111100 01233
Q ss_pred EEEecC----------CCHHhhhCCCCEEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhC
Q 022947 100 RGFLGQ----------QQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCC 154 (289)
Q Consensus 100 ~~~~~t----------~d~~eal~~aDiVIitag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~ 154 (289)
..+.+. .+++...++.|+||++|+... ...+..+....|+...+++++.+++..
T Consensus 195 ~~v~GDl~d~~LGLs~~~~~~L~~~vDiVIH~AA~v~-f~~~~~~a~~vNV~GT~nLLelA~~~~ 258 (605)
T PLN02503 195 VPVVGNVCESNLGLEPDLADEIAKEVDVIINSAANTT-FDERYDVAIDINTRGPCHLMSFAKKCK 258 (605)
T ss_pred EEEEeeCCCcccCCCHHHHHHHHhcCCEEEECccccc-cccCHHHHHHHHHHHHHHHHHHHHHcC
Confidence 332211 123333467999999997643 233445567889999999999887653
No 341
>PRK07831 short chain dehydrogenase; Provisional
Probab=96.86 E-value=0.083 Score=47.17 Aligned_cols=35 Identities=31% Similarity=0.294 Sum_probs=30.5
Q ss_pred CCEEEEEcCCC-ccHHHHHHHHHhCCCccEEEEEeCCC
Q 022947 46 GFKVAVLGAAG-GIGQPLAMLMKINPLVSVLHLYDVVN 82 (289)
Q Consensus 46 ~~KI~IIGaaG-~VGs~la~~L~~~g~~~eI~LvD~~~ 82 (289)
.+++.|+|++| -+|..++..|+..|. +|++.|++.
T Consensus 17 ~k~vlItG~sg~gIG~~ia~~l~~~G~--~V~~~~~~~ 52 (262)
T PRK07831 17 GKVVLVTAAAGTGIGSATARRALEEGA--RVVISDIHE 52 (262)
T ss_pred CCEEEEECCCcccHHHHHHHHHHHcCC--EEEEEeCCH
Confidence 45899999977 599999999999997 799999865
No 342
>COG0136 Asd Aspartate-semialdehyde dehydrogenase [Amino acid transport and metabolism]
Probab=96.84 E-value=0.0059 Score=57.42 Aligned_cols=73 Identities=27% Similarity=0.350 Sum_probs=48.1
Q ss_pred CCEEEEEcCCCccHHHHHHHHHhCC-CccEEEEEeCCCchhHH-hhhhcccCCceEEEEecCCCHHhhhCCCCEEEEcCC
Q 022947 46 GFKVAVLGAAGGIGQPLAMLMKINP-LVSVLHLYDVVNTPGVT-ADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAG 123 (289)
Q Consensus 46 ~~KI~IIGaaG~VGs~la~~L~~~g-~~~eI~LvD~~~~~g~~-~DL~~~~~~~~v~~~~~t~d~~eal~~aDiVIitag 123 (289)
++||+|+||+|.||+.+...|..+. .+.++.++-..+..|+. .++..... .+.. ...|. .+++++|+||+++|
T Consensus 1 ~~~VavvGATG~VG~~~~~~L~e~~f~~~~~~~~AS~rSaG~~~~~f~~~~~--~v~~--~~~~~-~~~~~~Divf~~ag 75 (334)
T COG0136 1 KLNVAVLGATGAVGQVLLELLEERHFPFEELVLLASARSAGKKYIEFGGKSI--GVPE--DAADE-FVFSDVDIVFFAAG 75 (334)
T ss_pred CcEEEEEeccchHHHHHHHHHHhcCCCcceEEEEecccccCCccccccCccc--cCcc--ccccc-cccccCCEEEEeCc
Confidence 4699999999999999999998854 56677887665544443 43333211 1111 01132 45789999999986
No 343
>PRK06200 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase; Provisional
Probab=96.82 E-value=0.014 Score=52.16 Aligned_cols=36 Identities=17% Similarity=0.241 Sum_probs=32.1
Q ss_pred CCCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCC
Q 022947 45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN 82 (289)
Q Consensus 45 ~~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~ 82 (289)
+.+++.|+||+|.+|..++..|+..|. +|+++|+++
T Consensus 5 ~~k~vlVtGas~gIG~~ia~~l~~~G~--~V~~~~r~~ 40 (263)
T PRK06200 5 HGQVALITGGGSGIGRALVERFLAEGA--RVAVLERSA 40 (263)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCC--EEEEEeCCH
Confidence 346899999999999999999999997 899999875
No 344
>PRK06598 aspartate-semialdehyde dehydrogenase; Reviewed
Probab=96.82 E-value=0.0065 Score=58.18 Aligned_cols=72 Identities=22% Similarity=0.204 Sum_probs=44.6
Q ss_pred CCEEEEEcCCCccHHHHHHHHHh-CCC-ccEEEEEeCCCchhHHhhhhcccCCceEEEEecCCCHHhhhCCCCEEEEcCC
Q 022947 46 GFKVAVLGAAGGIGQPLAMLMKI-NPL-VSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAG 123 (289)
Q Consensus 46 ~~KI~IIGaaG~VGs~la~~L~~-~g~-~~eI~LvD~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~eal~~aDiVIitag 123 (289)
|+||+|+||+|+||..+...++. ..+ ..+++++......+....+... ...... ..+. +.++++|+||+++|
T Consensus 1 m~~VAIVGATG~vG~ell~llL~~~~f~~~~l~~~ss~~sg~~~~~f~g~----~~~v~~-~~~~-~~~~~~Divf~a~~ 74 (369)
T PRK06598 1 MKKVGFVGWRGMVGSVLMQRMVEENDFDLIEPVFFSTSQAGGAAPSFGGK----EGTLQD-AFDI-DALKKLDIIITCQG 74 (369)
T ss_pred CeEEEEEeCCCHHHHHHHHHHHhCCCCCcCcEEEecchhhCCcccccCCC----cceEEe-cCCh-hHhcCCCEEEECCC
Confidence 36999999999999999974554 444 4568887654322232222221 112121 1222 56899999999875
No 345
>PRK06953 short chain dehydrogenase; Provisional
Probab=96.81 E-value=0.018 Score=50.18 Aligned_cols=113 Identities=16% Similarity=0.187 Sum_probs=63.6
Q ss_pred CEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchhHHhhhhcccCCceEE-EEecCCCHHh---hhC--CCCEEEE
Q 022947 47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVR-GFLGQQQLED---ALT--GMDIVII 120 (289)
Q Consensus 47 ~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g~~~DL~~~~~~~~v~-~~~~t~d~~e---al~--~aDiVIi 120 (289)
+++.|+|++|.+|+.++..|+..|. +|+++|++.... .++...... .+. ..+...++++ .+. ..|+||+
T Consensus 2 ~~vlvtG~sg~iG~~la~~L~~~G~--~v~~~~r~~~~~--~~~~~~~~~-~~~~D~~~~~~v~~~~~~~~~~~~d~vi~ 76 (222)
T PRK06953 2 KTVLIVGASRGIGREFVRQYRADGW--RVIATARDAAAL--AALQALGAE-ALALDVADPASVAGLAWKLDGEALDAAVY 76 (222)
T ss_pred ceEEEEcCCCchhHHHHHHHHhCCC--EEEEEECCHHHH--HHHHhccce-EEEecCCCHHHHHHHHHHhcCCCCCEEEE
Confidence 4799999999999999999998887 899999875211 112211100 011 0111112222 133 4799999
Q ss_pred cCCCCCC---C--CCch---hhHHHhhHHHHHHHHHHHHHhC--CCcEEEEecC
Q 022947 121 PAGVPRK---P--GMTR---DDLFNINAGIVKTLCEGIAKCC--PKAIVNLISN 164 (289)
Q Consensus 121 tag~~~~---~--g~~r---~d~~~~N~~i~~~i~~~i~~~~--p~aiviv~tN 164 (289)
++|.... + ..+. ...+..|+.....+.+.+.++- ..+.+++++.
T Consensus 77 ~ag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~g~iv~isS 130 (222)
T PRK06953 77 VAGVYGPRTEGVEPITREDFDAVMHTNVLGPMQLLPILLPLVEAAGGVLAVLSS 130 (222)
T ss_pred CCCcccCCCCCcccCCHHHHHHHHhhhhhhHHHHHHHHHHhhhccCCeEEEEcC
Confidence 9987521 1 1122 3356677766666665555432 2345555544
No 346
>PRK08605 D-lactate dehydrogenase; Validated
Probab=96.81 E-value=0.0055 Score=57.86 Aligned_cols=62 Identities=29% Similarity=0.416 Sum_probs=44.4
Q ss_pred CCEEEEEcCCCccHHHHHHHHHh-CCCccEEEEEeCCCchhHHhhhhcccCCceEEEEecCCCHHhhhCCCCEEEEcC
Q 022947 46 GFKVAVLGAAGGIGQPLAMLMKI-NPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPA 122 (289)
Q Consensus 46 ~~KI~IIGaaG~VGs~la~~L~~-~g~~~eI~LvD~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~eal~~aDiVIita 122 (289)
.+||+|||. |.+|+.+|..|+. .|. +|+.+|....... .. .+. ...++++.+++||+|+++.
T Consensus 146 g~~VgIIG~-G~IG~~vA~~L~~~~g~--~V~~~d~~~~~~~----~~-----~~~---~~~~l~ell~~aDvIvl~l 208 (332)
T PRK08605 146 DLKVAVIGT-GRIGLAVAKIFAKGYGS--DVVAYDPFPNAKA----AT-----YVD---YKDTIEEAVEGADIVTLHM 208 (332)
T ss_pred CCEEEEECC-CHHHHHHHHHHHhcCCC--EEEEECCCccHhH----Hh-----hcc---ccCCHHHHHHhCCEEEEeC
Confidence 568999998 9999999998843 355 8999987642111 10 011 1236788999999999986
No 347
>PLN02712 arogenate dehydrogenase
Probab=96.79 E-value=0.01 Score=61.09 Aligned_cols=66 Identities=18% Similarity=0.257 Sum_probs=46.2
Q ss_pred CCCCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchhHHhhhhcccCCceEEEEecCCCHHhhhC-CCCEEEEcC
Q 022947 44 SPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALT-GMDIVIIPA 122 (289)
Q Consensus 44 ~~~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~eal~-~aDiVIita 122 (289)
.+++||+|||. |.+|.+++..|...|. +|+.+|.+.....+.++ . +.. ..++++.+. ++|+||++.
T Consensus 367 ~~~~kIgIIGl-G~mG~slA~~L~~~G~--~V~~~dr~~~~~~a~~~---G----v~~---~~~~~el~~~~aDvVILav 433 (667)
T PLN02712 367 GSKLKIAIVGF-GNFGQFLAKTMVKQGH--TVLAYSRSDYSDEAQKL---G----VSY---FSDADDLCEEHPEVILLCT 433 (667)
T ss_pred CCCCEEEEEec-CHHHHHHHHHHHHCcC--EEEEEECChHHHHHHHc---C----CeE---eCCHHHHHhcCCCEEEECC
Confidence 35679999998 9999999999988886 89999987521111211 1 111 235556565 599999985
No 348
>PRK07574 formate dehydrogenase; Provisional
Probab=96.79 E-value=0.01 Score=57.15 Aligned_cols=94 Identities=17% Similarity=0.229 Sum_probs=60.4
Q ss_pred CCCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchhHHhhhhcccCCceEEEEecCCCHHhhhCCCCEEEEcCCC
Q 022947 45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGV 124 (289)
Q Consensus 45 ~~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~eal~~aDiVIitag~ 124 (289)
..++|+|||. |.||+.+|..|...|. +|..+|+...... ..... .+.. ..++++.++.||+|+++...
T Consensus 191 ~gktVGIvG~-G~IG~~vA~~l~~fG~--~V~~~dr~~~~~~---~~~~~---g~~~---~~~l~ell~~aDvV~l~lPl 258 (385)
T PRK07574 191 EGMTVGIVGA-GRIGLAVLRRLKPFDV--KLHYTDRHRLPEE---VEQEL---GLTY---HVSFDSLVSVCDVVTIHCPL 258 (385)
T ss_pred CCCEEEEECC-CHHHHHHHHHHHhCCC--EEEEECCCCCchh---hHhhc---Ccee---cCCHHHHhhcCCEEEEcCCC
Confidence 4568999998 9999999999988887 9999998652111 11100 1111 13578889999999998532
Q ss_pred CCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEec
Q 022947 125 PRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLIS 163 (289)
Q Consensus 125 ~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~aiviv~t 163 (289)
. + .+-.++. .+.+....|.+++|+++
T Consensus 259 t--~---------~T~~li~--~~~l~~mk~ga~lIN~a 284 (385)
T PRK07574 259 H--P---------ETEHLFD--ADVLSRMKRGSYLVNTA 284 (385)
T ss_pred C--H---------HHHHHhC--HHHHhcCCCCcEEEECC
Confidence 1 1 1111221 23344456789999875
No 349
>PRK08703 short chain dehydrogenase; Provisional
Probab=96.77 E-value=0.089 Score=46.21 Aligned_cols=35 Identities=20% Similarity=0.226 Sum_probs=31.9
Q ss_pred CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCC
Q 022947 46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN 82 (289)
Q Consensus 46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~ 82 (289)
.++|.|+|++|.+|.+++..|+..|. +|+++++++
T Consensus 6 ~k~vlItG~sggiG~~la~~l~~~g~--~V~~~~r~~ 40 (239)
T PRK08703 6 DKTILVTGASQGLGEQVAKAYAAAGA--TVILVARHQ 40 (239)
T ss_pred CCEEEEECCCCcHHHHHHHHHHHcCC--EEEEEeCCh
Confidence 45899999999999999999999997 899999876
No 350
>PRK13304 L-aspartate dehydrogenase; Reviewed
Probab=96.77 E-value=0.0087 Score=54.65 Aligned_cols=69 Identities=13% Similarity=0.285 Sum_probs=44.4
Q ss_pred CCEEEEEcCCCccHHHHHHHHHhCC-CccEEEEEeCCCchhHHhhhhcccCCceEEEEecCCCHHhhhCCCCEEEEcCC
Q 022947 46 GFKVAVLGAAGGIGQPLAMLMKINP-LVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAG 123 (289)
Q Consensus 46 ~~KI~IIGaaG~VGs~la~~L~~~g-~~~eI~LvD~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~eal~~aDiVIitag 123 (289)
+|||+|||+ |.+|..++..+...+ -..-+.++|.+... +.++.... . ...+ +++++.+.++|+|++++.
T Consensus 1 mmrIgIIG~-G~iG~~ia~~l~~~~~~~elv~v~d~~~~~--a~~~a~~~-~--~~~~---~~~~ell~~~DvVvi~a~ 70 (265)
T PRK13304 1 MLKIGIVGC-GAIASLITKAILSGRINAELYAFYDRNLEK--AENLASKT-G--AKAC---LSIDELVEDVDLVVECAS 70 (265)
T ss_pred CCEEEEECc-cHHHHHHHHHHHcCCCCeEEEEEECCCHHH--HHHHHHhc-C--CeeE---CCHHHHhcCCCEEEEcCC
Confidence 479999998 999999998887654 22235678876521 12222211 1 1222 356676799999999964
No 351
>PRK07578 short chain dehydrogenase; Provisional
Probab=96.77 E-value=0.017 Score=49.56 Aligned_cols=104 Identities=21% Similarity=0.186 Sum_probs=59.0
Q ss_pred CEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchhHHhhhhcccCCceEEEEecCCCHHhhhCCCCEEEEcCCCCC
Q 022947 47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVPR 126 (289)
Q Consensus 47 ~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~eal~~aDiVIitag~~~ 126 (289)
|++.|+|++|.+|..++..|++. . +|++++++.. ....|+.+... +. ...+.+...|++|.++|...
T Consensus 1 ~~vlItGas~giG~~la~~l~~~-~--~vi~~~r~~~-~~~~D~~~~~~---~~------~~~~~~~~id~lv~~ag~~~ 67 (199)
T PRK07578 1 MKILVIGASGTIGRAVVAELSKR-H--EVITAGRSSG-DVQVDITDPAS---IR------ALFEKVGKVDAVVSAAGKVH 67 (199)
T ss_pred CeEEEEcCCcHHHHHHHHHHHhc-C--cEEEEecCCC-ceEecCCChHH---HH------HHHHhcCCCCEEEECCCCCC
Confidence 48999999999999999998877 4 8999987642 11123332210 00 01122347899999998642
Q ss_pred C-C--CCchh---hHHHhhHHHHHHHHHHHHHh-CCCcEEEEec
Q 022947 127 K-P--GMTRD---DLFNINAGIVKTLCEGIAKC-CPKAIVNLIS 163 (289)
Q Consensus 127 ~-~--g~~r~---d~~~~N~~i~~~i~~~i~~~-~p~aiviv~t 163 (289)
. + ..+.. +.+..|+.....+.+...++ .+.+.++++|
T Consensus 68 ~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~g~iv~is 111 (199)
T PRK07578 68 FAPLAEMTDEDFNVGLQSKLMGQVNLVLIGQHYLNDGGSFTLTS 111 (199)
T ss_pred CCchhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCeEEEEc
Confidence 1 1 12222 23445555444444444332 1345555555
No 352
>PRK07775 short chain dehydrogenase; Provisional
Probab=96.76 E-value=0.046 Score=49.39 Aligned_cols=35 Identities=23% Similarity=0.186 Sum_probs=30.9
Q ss_pred CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCC
Q 022947 46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN 82 (289)
Q Consensus 46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~ 82 (289)
++.+.|+||+|.+|.+++..|+.+|. +|++++++.
T Consensus 10 ~~~vlVtGa~g~iG~~la~~L~~~G~--~V~~~~r~~ 44 (274)
T PRK07775 10 RRPALVAGASSGIGAATAIELAAAGF--PVALGARRV 44 (274)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCC--EEEEEeCCH
Confidence 35799999999999999999999997 888888765
No 353
>TIGR01745 asd_gamma aspartate-semialdehyde dehydrogenase, gamma-proteobacterial.
Probab=96.76 E-value=0.0074 Score=57.66 Aligned_cols=71 Identities=18% Similarity=0.274 Sum_probs=47.1
Q ss_pred CEEEEEcCCCccHHHHHHHHH-hCCC-ccEEEEEeCCCchhHHhhhhcccCCceEEEEecCCCHHhhhCCCCEEEEcCC
Q 022947 47 FKVAVLGAAGGIGQPLAMLMK-INPL-VSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAG 123 (289)
Q Consensus 47 ~KI~IIGaaG~VGs~la~~L~-~~g~-~~eI~LvD~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~eal~~aDiVIitag 123 (289)
+||+|+||+|.||+.+...|. ++.+ ..+++++...+..|........ ...+.. .++. +++++.|+||+++|
T Consensus 1 ~~VavvGATG~VG~~ll~~L~~e~~fp~~~~~~~ss~~s~g~~~~f~~~--~~~v~~---~~~~-~~~~~vDivffa~g 73 (366)
T TIGR01745 1 KNVGLVGWRGMVGSVLMQRMQEERDFDAIRPVFFSTSQLGQAAPSFGGT--TGTLQD---AFDI-DALKALDIIITCQG 73 (366)
T ss_pred CeEEEEcCcCHHHHHHHHHHHhCCCCccccEEEEEchhhCCCcCCCCCC--cceEEc---Cccc-ccccCCCEEEEcCC
Confidence 489999999999999998888 5554 3688888765533333322221 112222 1221 47899999999986
No 354
>PRK06123 short chain dehydrogenase; Provisional
Probab=96.76 E-value=0.056 Score=47.56 Aligned_cols=34 Identities=26% Similarity=0.303 Sum_probs=28.6
Q ss_pred CEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCC
Q 022947 47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN 82 (289)
Q Consensus 47 ~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~ 82 (289)
+.+.|+|++|.+|+.++..|+..|. .+++.+.+.
T Consensus 3 ~~~lVtG~~~~iG~~~a~~l~~~G~--~vv~~~~~~ 36 (248)
T PRK06123 3 KVMIITGASRGIGAATALLAAERGY--AVCLNYLRN 36 (248)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCC--eEEEecCCC
Confidence 3689999999999999999999886 777777543
No 355
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,
Probab=96.76 E-value=0.012 Score=55.04 Aligned_cols=100 Identities=21% Similarity=0.298 Sum_probs=63.5
Q ss_pred CCCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCch--hHHhhhhcccCCceEEEEecCCCHHhhhCCCCEEEEcC
Q 022947 45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP--GVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPA 122 (289)
Q Consensus 45 ~~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~--g~~~DL~~~~~~~~v~~~~~t~d~~eal~~aDiVIita 122 (289)
..+||+|+|+ |.+|..++..|...+. .+|.++|++..+ ..+.++. ..+.. .+++.+.+.++|+||.+.
T Consensus 177 ~~~~V~ViGa-G~iG~~~a~~L~~~g~-~~V~v~~r~~~ra~~la~~~g-----~~~~~---~~~~~~~l~~aDvVi~at 246 (311)
T cd05213 177 KGKKVLVIGA-GEMGELAAKHLAAKGV-AEITIANRTYERAEELAKELG-----GNAVP---LDELLELLNEADVVISAT 246 (311)
T ss_pred cCCEEEEECc-HHHHHHHHHHHHHcCC-CEEEEEeCCHHHHHHHHHHcC-----CeEEe---HHHHHHHHhcCCEEEECC
Confidence 4679999998 9999999988877553 489999987522 2222221 11111 135667889999999997
Q ss_pred CCCCCCCCchhhHHHhhHHHHHHHHHHHHHh-CCCcEEEEecCCCccc
Q 022947 123 GVPRKPGMTRDDLFNINAGIVKTLCEGIAKC-CPKAIVNLISNPVNST 169 (289)
Q Consensus 123 g~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~-~p~aiviv~tNPvd~~ 169 (289)
+.+.. ...+.+. ++.. ....+++=+++|-|+=
T Consensus 247 ~~~~~------------~~~~~~~---~~~~~~~~~~viDlavPrdi~ 279 (311)
T cd05213 247 GAPHY------------AKIVERA---MKKRSGKPRLIVDLAVPRDIE 279 (311)
T ss_pred CCCch------------HHHHHHH---HhhCCCCCeEEEEeCCCCCCc
Confidence 65521 1111222 1112 2456888889998864
No 356
>PRK12824 acetoacetyl-CoA reductase; Provisional
Probab=96.75 E-value=0.026 Score=49.51 Aligned_cols=115 Identities=21% Similarity=0.148 Sum_probs=63.5
Q ss_pred CEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchhHHhhhhcc--cCCceEEEEe-cCCC---HHhh-------hC
Q 022947 47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHM--DTNAVVRGFL-GQQQ---LEDA-------LT 113 (289)
Q Consensus 47 ~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g~~~DL~~~--~~~~~v~~~~-~t~d---~~ea-------l~ 113 (289)
+++.|+|++|.+|+.++..|+..|. .|++.|++.. ....++... ....++..+. +-.+ ..++ +.
T Consensus 3 k~vlItG~s~~iG~~la~~l~~~g~--~vi~~~r~~~-~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~ 79 (245)
T PRK12824 3 KIALVTGAKRGIGSAIARELLNDGY--RVIATYFSGN-DCAKDWFEEYGFTEDQVRLKELDVTDTEECAEALAEIEEEEG 79 (245)
T ss_pred CEEEEeCCCchHHHHHHHHHHHcCC--EEEEEeCCcH-HHHHHHHHHhhccCCeEEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence 4889999999999999999999886 8999998742 111111111 0011222211 1111 2222 23
Q ss_pred CCCEEEEcCCCCCCC---CCc---hhhHHHhhHHHHHHH----HHHHHHhCCCcEEEEecCC
Q 022947 114 GMDIVIIPAGVPRKP---GMT---RDDLFNINAGIVKTL----CEGIAKCCPKAIVNLISNP 165 (289)
Q Consensus 114 ~aDiVIitag~~~~~---g~~---r~d~~~~N~~i~~~i----~~~i~~~~p~aiviv~tNP 165 (289)
..|++|+++|..... ..+ -...+..|+.....+ .+.+++. +.+.++++|..
T Consensus 80 ~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~-~~~~iv~iss~ 140 (245)
T PRK12824 80 PVDILVNNAGITRDSVFKRMSHQEWNDVINTNLNSVFNVTQPLFAAMCEQ-GYGRIINISSV 140 (245)
T ss_pred CCCEEEECCCCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHh-CCeEEEEECCh
Confidence 589999999864211 111 123445666554444 4444443 34566666643
No 357
>PRK06139 short chain dehydrogenase; Provisional
Probab=96.75 E-value=0.026 Score=53.12 Aligned_cols=114 Identities=18% Similarity=0.112 Sum_probs=64.5
Q ss_pred CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCc--hhHHhhhhcccCCceEEE----EecCCCHHhh-------h
Q 022947 46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTNAVVRG----FLGQQQLEDA-------L 112 (289)
Q Consensus 46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~--~g~~~DL~~~~~~~~v~~----~~~t~d~~ea-------l 112 (289)
.++|.|+||+|.+|..++..|+..|. +|+++++++. +....++.... ..+.. .+..++.++. +
T Consensus 7 ~k~vlITGAs~GIG~aia~~la~~G~--~Vvl~~R~~~~l~~~~~~~~~~g--~~~~~~~~Dv~d~~~v~~~~~~~~~~~ 82 (330)
T PRK06139 7 GAVVVITGASSGIGQATAEAFARRGA--RLVLAARDEEALQAVAEECRALG--AEVLVVPTDVTDADQVKALATQAASFG 82 (330)
T ss_pred CCEEEEcCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhcC--CcEEEEEeeCCCHHHHHHHHHHHHHhc
Confidence 45899999999999999999999997 8999998762 22222332211 11111 1111122222 2
Q ss_pred CCCCEEEEcCCCCCCC---CCc---hhhHHHhhHHHH----HHHHHHHHHhCCCcEEEEecC
Q 022947 113 TGMDIVIIPAGVPRKP---GMT---RDDLFNINAGIV----KTLCEGIAKCCPKAIVNLISN 164 (289)
Q Consensus 113 ~~aDiVIitag~~~~~---g~~---r~d~~~~N~~i~----~~i~~~i~~~~p~aiviv~tN 164 (289)
...|++|.++|..... ..+ -.+.+..|+... +...+.+.+.. .+.+++++.
T Consensus 83 g~iD~lVnnAG~~~~~~~~~~~~e~~~~~~~vN~~g~~~~~~~~lp~~~~~~-~g~iV~isS 143 (330)
T PRK06139 83 GRIDVWVNNVGVGAVGRFEETPIEAHEQVIQTNLIGYMRDAHAALPIFKKQG-HGIFINMIS 143 (330)
T ss_pred CCCCEEEECCCcCCCCCcccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHHcC-CCEEEEEcC
Confidence 4689999999864321 111 123455555433 33444444432 456666553
No 358
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=96.74 E-value=0.0057 Score=50.43 Aligned_cols=73 Identities=21% Similarity=0.308 Sum_probs=48.8
Q ss_pred CCCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCch--hHHhhhhcccCCceEEEEecCCCHHhhhCCCCEEEEcC
Q 022947 45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP--GVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPA 122 (289)
Q Consensus 45 ~~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~--g~~~DL~~~~~~~~v~~~~~t~d~~eal~~aDiVIita 122 (289)
+.++|+|+|+ |.+|..++..|...+ ..+|.++|++... ..+.++... ..... ..+.++.++++|+||.+.
T Consensus 18 ~~~~i~iiG~-G~~g~~~a~~l~~~g-~~~v~v~~r~~~~~~~~~~~~~~~--~~~~~----~~~~~~~~~~~Dvvi~~~ 89 (155)
T cd01065 18 KGKKVLILGA-GGAARAVAYALAELG-AAKIVIVNRTLEKAKALAERFGEL--GIAIA----YLDLEELLAEADLIINTT 89 (155)
T ss_pred CCCEEEEECC-cHHHHHHHHHHHHCC-CCEEEEEcCCHHHHHHHHHHHhhc--cccee----ecchhhccccCCEEEeCc
Confidence 3569999998 999999999998876 3489999987622 222222211 00111 124556689999999997
Q ss_pred CCC
Q 022947 123 GVP 125 (289)
Q Consensus 123 g~~ 125 (289)
...
T Consensus 90 ~~~ 92 (155)
T cd01065 90 PVG 92 (155)
T ss_pred CCC
Confidence 544
No 359
>PRK09134 short chain dehydrogenase; Provisional
Probab=96.73 E-value=0.011 Score=52.64 Aligned_cols=113 Identities=14% Similarity=0.152 Sum_probs=62.6
Q ss_pred CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCC-c--hhHHhhhhcccCCceEEEEe-cCCC---HHhhh------
Q 022947 46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-T--PGVTADISHMDTNAVVRGFL-GQQQ---LEDAL------ 112 (289)
Q Consensus 46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~-~--~g~~~DL~~~~~~~~v~~~~-~t~d---~~eal------ 112 (289)
.+++.|+||+|.+|.+++..|+..|. .+++.+... . .....++... ...+..+. +-+| +.+++
T Consensus 9 ~k~vlItGas~giG~~la~~l~~~g~--~v~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~Dl~d~~~~~~~~~~~~~~ 84 (258)
T PRK09134 9 PRAALVTGAARRIGRAIALDLAAHGF--DVAVHYNRSRDEAEALAAEIRAL--GRRAVALQADLADEAEVRALVARASAA 84 (258)
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEeCCCHHHHHHHHHHHHhc--CCeEEEEEcCCCCHHHHHHHHHHHHHH
Confidence 35899999999999999999999887 787776543 1 1111122211 11222211 1112 22222
Q ss_pred -CCCCEEEEcCCCCCCC---CCc---hhhHHHhhHHHHHHHHHHHHHhC---CCcEEEEe
Q 022947 113 -TGMDIVIIPAGVPRKP---GMT---RDDLFNINAGIVKTLCEGIAKCC---PKAIVNLI 162 (289)
Q Consensus 113 -~~aDiVIitag~~~~~---g~~---r~d~~~~N~~i~~~i~~~i~~~~---p~aiviv~ 162 (289)
...|+||+++|..... ..+ -...+..|+.....+.+.+.++. ..+.++++
T Consensus 85 ~~~iD~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~ 144 (258)
T PRK09134 85 LGPITLLVNNASLFEYDSAASFTRASWDRHMATNLRAPFVLAQAFARALPADARGLVVNM 144 (258)
T ss_pred cCCCCEEEECCcCCCCCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCceEEEE
Confidence 3479999999864321 112 13356677765555555555432 23455544
No 360
>PRK07023 short chain dehydrogenase; Provisional
Probab=96.73 E-value=0.0058 Score=53.97 Aligned_cols=35 Identities=17% Similarity=0.193 Sum_probs=31.6
Q ss_pred CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCC
Q 022947 46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN 82 (289)
Q Consensus 46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~ 82 (289)
+|+|.|+||+|.+|..++..|+..|. +|++++++.
T Consensus 1 ~~~vlItGasggiG~~ia~~l~~~G~--~v~~~~r~~ 35 (243)
T PRK07023 1 AVRAIVTGHSRGLGAALAEQLLQPGI--AVLGVARSR 35 (243)
T ss_pred CceEEEecCCcchHHHHHHHHHhCCC--EEEEEecCc
Confidence 46899999999999999999999997 899998865
No 361
>KOG1371 consensus UDP-glucose 4-epimerase/UDP-sulfoquinovose synthase [Cell wall/membrane/envelope biogenesis]
Probab=96.72 E-value=0.016 Score=54.26 Aligned_cols=105 Identities=19% Similarity=0.109 Sum_probs=67.4
Q ss_pred CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCC---c--hhHHhhhhcccCCceEEEEecC-CC---HHhhh--CC
Q 022947 46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN---T--PGVTADISHMDTNAVVRGFLGQ-QQ---LEDAL--TG 114 (289)
Q Consensus 46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~---~--~g~~~DL~~~~~~~~v~~~~~t-~d---~~eal--~~ 114 (289)
.++|.|+||+|++|++.+..|+.+|+ +|+++|.-. . -..+..+.+. ...+....+. .| +++.+ ..
T Consensus 2 ~~~VLVtGgaGyiGsht~l~L~~~gy--~v~~vDNl~n~~~~sl~r~~~l~~~--~~~v~f~~~Dl~D~~~L~kvF~~~~ 77 (343)
T KOG1371|consen 2 GKHVLVTGGAGYIGSHTVLALLKRGY--GVVIVDNLNNSYLESLKRVRQLLGE--GKSVFFVEGDLNDAEALEKLFSEVK 77 (343)
T ss_pred CcEEEEecCCcceehHHHHHHHhCCC--cEEEEecccccchhHHHHHHHhcCC--CCceEEEEeccCCHHHHHHHHhhcC
Confidence 45899999999999999999999998 999999754 1 1122222221 1223322111 12 22222 34
Q ss_pred CCEEEEcCCCCCC-C-CCchhhHHHhhHHHHHHHHHHHHHhC
Q 022947 115 MDIVIIPAGVPRK-P-GMTRDDLFNINAGIVKTLCEGIAKCC 154 (289)
Q Consensus 115 aDiVIitag~~~~-~-g~~r~d~~~~N~~i~~~i~~~i~~~~ 154 (289)
-|-|++.|+...- + =+.+..+...|+-....+.+.+++++
T Consensus 78 fd~V~Hfa~~~~vgeS~~~p~~Y~~nNi~gtlnlLe~~~~~~ 119 (343)
T KOG1371|consen 78 FDAVMHFAALAAVGESMENPLSYYHNNIAGTLNLLEVMKAHN 119 (343)
T ss_pred CceEEeehhhhccchhhhCchhheehhhhhHHHHHHHHHHcC
Confidence 6778887764321 1 12345667788999999999999987
No 362
>TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating. This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason.
Probab=96.71 E-value=0.0093 Score=58.93 Aligned_cols=97 Identities=14% Similarity=0.195 Sum_probs=59.4
Q ss_pred EEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchhHHhhhhcc-cCCceEEEEecCCCHHhhhCCCCEEEEcCCCCC
Q 022947 48 KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHM-DTNAVVRGFLGQQQLEDALTGMDIVIIPAGVPR 126 (289)
Q Consensus 48 KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g~~~DL~~~-~~~~~v~~~~~t~d~~eal~~aDiVIitag~~~ 126 (289)
+|+|||. |.+|.++|..|+..|+ +|.++|+++.. ..++... .....+.......++.+.++++|+||++.-.
T Consensus 1 ~IG~IGL-G~MG~~mA~nL~~~G~--~V~v~drt~~~--~~~l~~~~~~g~~~~~~~s~~e~v~~l~~~dvIil~v~~-- 73 (467)
T TIGR00873 1 DIGVIGL-AVMGSNLALNMADHGF--TVSVYNRTPEK--TDEFLAEHAKGKKIVGAYSIEEFVQSLERPRKIMLMVKA-- 73 (467)
T ss_pred CEEEEee-HHHHHHHHHHHHhcCC--eEEEEeCCHHH--HHHHHhhccCCCCceecCCHHHHHhhcCCCCEEEEECCC--
Confidence 4899998 9999999999999998 99999987622 2222221 0000122211111233345689999998521
Q ss_pred CCCCchhhHHHhhHHHHHHHHHHHHHhC-CCcEEEEecC
Q 022947 127 KPGMTRDDLFNINAGIVKTLCEGIAKCC-PKAIVNLISN 164 (289)
Q Consensus 127 ~~g~~r~d~~~~N~~i~~~i~~~i~~~~-p~aiviv~tN 164 (289)
+ +.+.++++.+..+- ++.+||-.||
T Consensus 74 --~-----------~~v~~Vi~~l~~~L~~g~iIID~gn 99 (467)
T TIGR00873 74 --G-----------APVDAVINQLLPLLEKGDIIIDGGN 99 (467)
T ss_pred --c-----------HHHHHHHHHHHhhCCCCCEEEECCC
Confidence 1 23444555665553 6778887776
No 363
>PRK08063 enoyl-(acyl carrier protein) reductase; Provisional
Probab=96.71 E-value=0.046 Score=48.18 Aligned_cols=114 Identities=15% Similarity=0.175 Sum_probs=60.8
Q ss_pred CEEEEEcCCCccHHHHHHHHHhCCCccEEEEE-eCCCc--hhHHhhhhcccCCceEEEEe-c---CCCHHhhh-------
Q 022947 47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLY-DVVNT--PGVTADISHMDTNAVVRGFL-G---QQQLEDAL------- 112 (289)
Q Consensus 47 ~KI~IIGaaG~VGs~la~~L~~~g~~~eI~Lv-D~~~~--~g~~~DL~~~~~~~~v~~~~-~---t~d~~eal------- 112 (289)
+++.|+||+|.+|..++..|+..|. +|++. +++.. .....++.... ..+..+. + ..++.+++
T Consensus 5 ~~vlItGa~g~iG~~~a~~l~~~g~--~v~~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~ 80 (250)
T PRK08063 5 KVALVTGSSRGIGKAIALRLAEEGY--DIAVNYARSRKAAEETAEEIEALG--RKALAVKANVGDVEKIKEMFAQIDEEF 80 (250)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCC--EEEEEcCCCHHHHHHHHHHHHhcC--CeEEEEEcCCCCHHHHHHHHHHHHHHc
Confidence 5899999999999999999999987 76654 44432 11112222211 1222111 1 11222222
Q ss_pred CCCCEEEEcCCCCCC-C--CCchh---hHHHhhHHHHHHHHHHHHHh---CCCcEEEEecC
Q 022947 113 TGMDIVIIPAGVPRK-P--GMTRD---DLFNINAGIVKTLCEGIAKC---CPKAIVNLISN 164 (289)
Q Consensus 113 ~~aDiVIitag~~~~-~--g~~r~---d~~~~N~~i~~~i~~~i~~~---~p~aiviv~tN 164 (289)
...|+||..+|.... + ..+.. ..+..|......+++.+.++ .+.+.|+++|.
T Consensus 81 ~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~g~iv~~sS 141 (250)
T PRK08063 81 GRLDVFVNNAASGVLRPAMELEESHWDWTMNINAKALLFCAQEAAKLMEKVGGGKIISLSS 141 (250)
T ss_pred CCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCeEEEEEcc
Confidence 368999999885321 1 11111 13445655555555554443 23456666654
No 364
>PRK08416 7-alpha-hydroxysteroid dehydrogenase; Provisional
Probab=96.70 E-value=0.11 Score=46.51 Aligned_cols=33 Identities=15% Similarity=0.276 Sum_probs=29.0
Q ss_pred CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeC
Q 022947 46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDV 80 (289)
Q Consensus 46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~ 80 (289)
.+++.|+||++.+|..++..|+..|. .|++.+.
T Consensus 8 ~k~vlItGas~gIG~~ia~~l~~~G~--~v~~~~~ 40 (260)
T PRK08416 8 GKTLVISGGTRGIGKAIVYEFAQSGV--NIAFTYN 40 (260)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCC--EEEEEcC
Confidence 45899999999999999999999997 7888754
No 365
>PRK07062 short chain dehydrogenase; Provisional
Probab=96.70 E-value=0.046 Score=48.86 Aligned_cols=116 Identities=15% Similarity=0.152 Sum_probs=64.6
Q ss_pred CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCc--hhHHhhhhcccCCceEEEEe-cCCCH---H-------hhh
Q 022947 46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTNAVVRGFL-GQQQL---E-------DAL 112 (289)
Q Consensus 46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~--~g~~~DL~~~~~~~~v~~~~-~t~d~---~-------eal 112 (289)
.+.+.|+||+|.+|..++..|+..|. +|+++++++. .....++.......++..+. +-.|. . +.+
T Consensus 8 ~k~~lItGas~giG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~ 85 (265)
T PRK07062 8 GRVAVVTGGSSGIGLATVELLLEAGA--SVAICGRDEERLASAEARLREKFPGARLLAARCDVLDEADVAAFAAAVEARF 85 (265)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCC--eEEEEeCCHHHHHHHHHHHHhhCCCceEEEEEecCCCHHHHHHHHHHHHHhc
Confidence 35799999999999999999999997 8999998762 22222232211111222111 11222 1 123
Q ss_pred CCCCEEEEcCCCCCCC---CCch---hhHHHhh----HHHHHHHHHHHHHhCCCcEEEEecC
Q 022947 113 TGMDIVIIPAGVPRKP---GMTR---DDLFNIN----AGIVKTLCEGIAKCCPKAIVNLISN 164 (289)
Q Consensus 113 ~~aDiVIitag~~~~~---g~~r---~d~~~~N----~~i~~~i~~~i~~~~p~aiviv~tN 164 (289)
...|++|.+||..... ..+. ...+..| +...+.+.+.+++. ..+.|+++|.
T Consensus 86 g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~-~~g~iv~isS 146 (265)
T PRK07062 86 GGVDMLVNNAGQGRVSTFADTTDDAWRDELELKYFSVINPTRAFLPLLRAS-AAASIVCVNS 146 (265)
T ss_pred CCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhcc-CCcEEEEecc
Confidence 4679999999864321 1111 1223334 33455555656543 3456666554
No 366
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=96.69 E-value=0.0058 Score=52.82 Aligned_cols=75 Identities=20% Similarity=0.213 Sum_probs=47.8
Q ss_pred CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCch--hHHhhhhcccCCceEEEE--ecCCCHHhhhCCCCEEEEc
Q 022947 46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP--GVTADISHMDTNAVVRGF--LGQQQLEDALTGMDIVIIP 121 (289)
Q Consensus 46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~--g~~~DL~~~~~~~~v~~~--~~t~d~~eal~~aDiVIit 121 (289)
.+++.|+|++|.+|..++..|+..+. +|.+++++..+ ....++.+.. ...+... ....++.++++++|+||.+
T Consensus 28 ~~~vlVlGgtG~iG~~~a~~l~~~g~--~V~l~~R~~~~~~~l~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~diVi~a 104 (194)
T cd01078 28 GKTAVVLGGTGPVGQRAAVLLAREGA--RVVLVGRDLERAQKAADSLRARF-GEGVGAVETSDDAARAAAIKGADVVFAA 104 (194)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCC--EEEEEcCCHHHHHHHHHHHHhhc-CCcEEEeeCCCHHHHHHHHhcCCEEEEC
Confidence 35899999889999999999988875 89999876521 1222222111 1122211 1112345788999998887
Q ss_pred CC
Q 022947 122 AG 123 (289)
Q Consensus 122 ag 123 (289)
..
T Consensus 105 t~ 106 (194)
T cd01078 105 GA 106 (194)
T ss_pred CC
Confidence 43
No 367
>PF03949 Malic_M: Malic enzyme, NAD binding domain; InterPro: IPR012302 Malic enzymes (malate oxidoreductases) catalyse the oxidative decarboxylation of malate to form pyruvate [], a reaction important in a number of metabolic pathways - e.g. carbon dioxide released from the reaction may be used in sugar production during the Calvin cycle of photosynthesis []. There are 3 forms of the enzyme []: an NAD-dependent form that decarboxylates oxaloacetate; an NAD-dependent form that does not decarboxylate oxalo-acetate; and an NADPH-dependent form []. Other proteins known to be similar to malic enzymes are the Escherichia coli scfA protein; an enzyme from Zea mays (Maize), formerly thought to be cinnamyl-alcohol dehydrogenase []; and the hypothetical Saccharomyces cerevisiae protein YKL029c. Studies on the duck liver malic enzyme reveals that it can be alkylated by bromopyruvate, resulting in the loss of oxidative decarboxylation and the subsequent enhancement of pyruvate reductase activity []. The alkylated form is able to bind NADPH but not L-malate, indicating impaired substrate-or divalent metal ion-binding in the active site []. Sequence analysis has highlighted a cysteine residue as the point of alkylation, suggesting that it may play an important role in the activity of the enzyme [], although it is absent in the sequences from some species. There are three well conserved regions in the enzyme sequences. Two of them seem to be involved in the binding NAD or NADP. The significance of the third one, located in the central part of the enzymes, is not yet known.; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 2DVM_B 1WW8_A 3NV9_A 1PJ2_A 1PJL_B 1GZ3_A 1PJ4_A 1PJ3_C 1EFL_A 1EFK_B ....
Probab=96.69 E-value=0.0074 Score=54.89 Aligned_cols=121 Identities=21% Similarity=0.307 Sum_probs=77.1
Q ss_pred CCEEEEEcCCCccHHHHHHHHHhC----CCc-----cEEEEEeCCC--chhHHhhhhccc-----CCceEEEEecCCCHH
Q 022947 46 GFKVAVLGAAGGIGQPLAMLMKIN----PLV-----SVLHLYDVVN--TPGVTADISHMD-----TNAVVRGFLGQQQLE 109 (289)
Q Consensus 46 ~~KI~IIGaaG~VGs~la~~L~~~----g~~-----~eI~LvD~~~--~~g~~~DL~~~~-----~~~~v~~~~~t~d~~ 109 (289)
..||.+.|| |.-|..++..|... |+- ++++++|.+- ..+. .||.+.. ....... ..++.
T Consensus 25 d~riv~~GA-GsAg~gia~ll~~~~~~~G~~~~eA~~~i~lvD~~Gll~~~r-~~l~~~~~~~a~~~~~~~~---~~~L~ 99 (255)
T PF03949_consen 25 DQRIVFFGA-GSAGIGIARLLVAAMVREGLSEEEARKRIWLVDSKGLLTDDR-EDLNPHKKPFARKTNPEKD---WGSLL 99 (255)
T ss_dssp G-EEEEEB--SHHHHHHHHHHHHHHHCTTS-HHHHHTTEEEEETTEEEBTTT-SSHSHHHHHHHBSSSTTT-----SSHH
T ss_pred HcEEEEeCC-ChhHHHHHHHHHHHHHHhcCCHHHHhccEEEEeccceEeccC-ccCChhhhhhhccCccccc---ccCHH
Confidence 358999999 99999999877654 763 7899999875 1111 2222110 0011110 13788
Q ss_pred hhhCCC--CEEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecCCCc--ccHHHHHHHHHHhCCCCC
Q 022947 110 DALTGM--DIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVN--STVPIAAEVFKKVGTYDP 185 (289)
Q Consensus 110 eal~~a--DiVIitag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~aiviv~tNPvd--~~t~~~~~~~~~~~~~~~ 185 (289)
|+++++ |++|=+.|.+ | -+.+++.+.|.+++++.+|+-.|||.. -+++ +-.++ |..
T Consensus 100 eav~~~kPtvLIG~S~~~---g-----------~ft~evv~~Ma~~~erPIIF~LSNPt~~aE~~p---eda~~---~t~ 159 (255)
T PF03949_consen 100 EAVKGAKPTVLIGLSGQG---G-----------AFTEEVVRAMAKHNERPIIFPLSNPTPKAECTP---EDAYE---WTD 159 (255)
T ss_dssp HHHHCH--SEEEECSSST---T-----------SS-HHHHHHCHHHSSSEEEEE-SSSCGGSSS-H---HHHHH---TTT
T ss_pred HHHHhcCCCEEEEecCCC---C-----------cCCHHHHHHHhccCCCCEEEECCCCCCcccCCH---HHHHh---hCC
Confidence 999999 9998776643 2 135778899999999999999999987 6664 33443 444
Q ss_pred CcE-EEe
Q 022947 186 KRL-LGV 191 (289)
Q Consensus 186 ~kv-iG~ 191 (289)
.|+ |++
T Consensus 160 g~ai~At 166 (255)
T PF03949_consen 160 GRAIFAT 166 (255)
T ss_dssp SEEEEEE
T ss_pred ceEEEec
Confidence 554 465
No 368
>PLN03139 formate dehydrogenase; Provisional
Probab=96.68 E-value=0.013 Score=56.54 Aligned_cols=94 Identities=22% Similarity=0.223 Sum_probs=60.4
Q ss_pred CCCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchhHHhhhhcccCCceEEEEecCCCHHhhhCCCCEEEEcCCC
Q 022947 45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGV 124 (289)
Q Consensus 45 ~~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~eal~~aDiVIitag~ 124 (289)
..++|+|||. |.||..++..|..-|. +|..+|......... ... .+.. ..++++.+++||+|+++...
T Consensus 198 ~gktVGIVG~-G~IG~~vA~~L~afG~--~V~~~d~~~~~~~~~--~~~----g~~~---~~~l~ell~~sDvV~l~lPl 265 (386)
T PLN03139 198 EGKTVGTVGA-GRIGRLLLQRLKPFNC--NLLYHDRLKMDPELE--KET----GAKF---EEDLDAMLPKCDVVVINTPL 265 (386)
T ss_pred CCCEEEEEee-cHHHHHHHHHHHHCCC--EEEEECCCCcchhhH--hhc----Ccee---cCCHHHHHhhCCEEEEeCCC
Confidence 4569999998 9999999999988787 899999764211111 011 1111 13678889999999998521
Q ss_pred CCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEec
Q 022947 125 PRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLIS 163 (289)
Q Consensus 125 ~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~aiviv~t 163 (289)
. + .+-.++. .+.+....|.+++|+++
T Consensus 266 t--~---------~T~~li~--~~~l~~mk~ga~lIN~a 291 (386)
T PLN03139 266 T--E---------KTRGMFN--KERIAKMKKGVLIVNNA 291 (386)
T ss_pred C--H---------HHHHHhC--HHHHhhCCCCeEEEECC
Confidence 1 1 1122221 23455556889999875
No 369
>PRK06077 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=96.66 E-value=0.04 Score=48.57 Aligned_cols=33 Identities=21% Similarity=0.294 Sum_probs=28.0
Q ss_pred CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeC
Q 022947 46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDV 80 (289)
Q Consensus 46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~ 80 (289)
.++|.|+||+|++|++++..|+..|. ++++...
T Consensus 6 ~~~vlitGasg~iG~~l~~~l~~~g~--~v~~~~~ 38 (252)
T PRK06077 6 DKVVVVTGSGRGIGRAIAVRLAKEGS--LVVVNAK 38 (252)
T ss_pred CcEEEEeCCCChHHHHHHHHHHHCCC--EEEEEeC
Confidence 35899999999999999999999997 7766543
No 370
>PLN02928 oxidoreductase family protein
Probab=96.65 E-value=0.0089 Score=56.84 Aligned_cols=104 Identities=23% Similarity=0.207 Sum_probs=61.6
Q ss_pred CCCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchhHHhhh--hcccCCceEEEEecCCCHHhhhCCCCEEEEcC
Q 022947 45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADI--SHMDTNAVVRGFLGQQQLEDALTGMDIVIIPA 122 (289)
Q Consensus 45 ~~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g~~~DL--~~~~~~~~v~~~~~t~d~~eal~~aDiVIita 122 (289)
..++|+|+|. |.+|+.+|..|...|. +|+.+|+.........+ ................++++.++.||+|+++.
T Consensus 158 ~gktvGIiG~-G~IG~~vA~~l~afG~--~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~ell~~aDiVvl~l 234 (347)
T PLN02928 158 FGKTVFILGY-GAIGIELAKRLRPFGV--KLLATRRSWTSEPEDGLLIPNGDVDDLVDEKGGHEDIYEFAGEADIVVLCC 234 (347)
T ss_pred CCCEEEEECC-CHHHHHHHHHHhhCCC--EEEEECCCCChhhhhhhccccccccccccccCcccCHHHHHhhCCEEEECC
Confidence 3569999998 9999999999988887 99999975311111110 00000000000001236889999999999985
Q ss_pred CCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecC
Q 022947 123 GVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISN 164 (289)
Q Consensus 123 g~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~aiviv~tN 164 (289)
... + + +-.++. .+.+.+..|.+++|+++=
T Consensus 235 Plt--~-~--------T~~li~--~~~l~~Mk~ga~lINvaR 263 (347)
T PLN02928 235 TLT--K-E--------TAGIVN--DEFLSSMKKGALLVNIAR 263 (347)
T ss_pred CCC--h-H--------hhcccC--HHHHhcCCCCeEEEECCC
Confidence 321 1 1 111121 244555568999999863
No 371
>KOG1205 consensus Predicted dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=96.65 E-value=0.022 Score=52.60 Aligned_cols=121 Identities=18% Similarity=0.240 Sum_probs=79.3
Q ss_pred CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCC--chhHHhhhhcccCCceEEEE----ecCCCHH-------hhh
Q 022947 46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTNAVVRGF----LGQQQLE-------DAL 112 (289)
Q Consensus 46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~--~~g~~~DL~~~~~~~~v~~~----~~t~d~~-------eal 112 (289)
.+.|.|+|||.-+|.++|+.++..|. .++++.... .+-...++.......++... +..++.+ .-+
T Consensus 12 ~kvVvITGASsGIG~~lA~~la~~G~--~l~lvar~~rrl~~v~~~l~~~~~~~~v~~~~~Dvs~~~~~~~~~~~~~~~f 89 (282)
T KOG1205|consen 12 GKVVLITGASSGIGEALAYELAKRGA--KLVLVARRARRLERVAEELRKLGSLEKVLVLQLDVSDEESVKKFVEWAIRHF 89 (282)
T ss_pred CCEEEEeCCCcHHHHHHHHHHHhCCC--ceEEeehhhhhHHHHHHHHHHhCCcCccEEEeCccCCHHHHHHHHHHHHHhc
Confidence 34789999999999999999999997 778887655 22222444443211112211 1112222 346
Q ss_pred CCCCEEEEcCCCCCCCCC-c------hhhHHHhh----HHHHHHHHHHHHHhCCCcEEEEecCCCcccH
Q 022947 113 TGMDIVIIPAGVPRKPGM-T------RDDLFNIN----AGIVKTLCEGIAKCCPKAIVNLISNPVNSTV 170 (289)
Q Consensus 113 ~~aDiVIitag~~~~~g~-~------r~d~~~~N----~~i~~~i~~~i~~~~p~aiviv~tNPvd~~t 170 (289)
.+.|+.|.-||+.+ .+. + ..+.+..| +-..+...+.|++.+ ++.|+++++....++
T Consensus 90 g~vDvLVNNAG~~~-~~~~~~~~~~~~~~~mdtN~~G~V~~Tk~alp~m~~r~-~GhIVvisSiaG~~~ 156 (282)
T KOG1205|consen 90 GRVDVLVNNAGISL-VGFLEDTDIEDVRNVMDTNVFGTVYLTKAALPSMKKRN-DGHIVVISSIAGKMP 156 (282)
T ss_pred CCCCEEEecCcccc-ccccccCcHHHHHHHhhhhchhhHHHHHHHHHHhhhcC-CCeEEEEeccccccC
Confidence 79999999999877 321 1 12234444 678899999999887 899998887776543
No 372
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=96.64 E-value=0.024 Score=48.49 Aligned_cols=33 Identities=36% Similarity=0.578 Sum_probs=29.9
Q ss_pred EEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCC
Q 022947 48 KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN 82 (289)
Q Consensus 48 KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~ 82 (289)
||+|+|+ |.+|+.++..|+..|. .++.|+|.+.
T Consensus 1 ~VlViG~-GglGs~ia~~La~~Gv-g~i~lvD~D~ 33 (174)
T cd01487 1 KVGIAGA-GGLGSNIAVLLARSGV-GNLKLVDFDV 33 (174)
T ss_pred CEEEECc-CHHHHHHHHHHHHcCC-CeEEEEeCCE
Confidence 6899998 9999999999999986 5899999875
No 373
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=96.64 E-value=0.015 Score=50.97 Aligned_cols=35 Identities=26% Similarity=0.482 Sum_probs=31.3
Q ss_pred CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCC
Q 022947 46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN 82 (289)
Q Consensus 46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~ 82 (289)
..||.|+|+ |.+|+.++..|+..|. .+|.++|.+.
T Consensus 21 ~~~VlviG~-GglGs~ia~~La~~Gv-~~i~lvD~d~ 55 (202)
T TIGR02356 21 NSHVLIIGA-GGLGSPAALYLAGAGV-GTIVIVDDDH 55 (202)
T ss_pred CCCEEEECC-CHHHHHHHHHHHHcCC-CeEEEecCCE
Confidence 458999998 9999999999999995 6999999874
No 374
>PRK14874 aspartate-semialdehyde dehydrogenase; Provisional
Probab=96.64 E-value=0.0054 Score=57.92 Aligned_cols=71 Identities=24% Similarity=0.441 Sum_probs=46.6
Q ss_pred CCEEEEEcCCCccHHHHHHHHHhCCC-ccEEEEEeCCCchhHHhhhhcccCCceEEEEecCCCHHhhhCCCCEEEEcCC
Q 022947 46 GFKVAVLGAAGGIGQPLAMLMKINPL-VSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAG 123 (289)
Q Consensus 46 ~~KI~IIGaaG~VGs~la~~L~~~g~-~~eI~LvD~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~eal~~aDiVIitag 123 (289)
++||+|+||+|++|..+...|..+++ ..||..+-.++..++..++.. ..+... .. + ..+++++|+||++.|
T Consensus 1 ~~~V~IvGAtG~vG~~l~~lL~~~~hp~~~l~~l~s~~~~g~~l~~~g----~~i~v~-d~-~-~~~~~~vDvVf~A~g 72 (334)
T PRK14874 1 GYNVAVVGATGAVGREMLNILEERNFPVDKLRLLASARSAGKELSFKG----KELKVE-DL-T-TFDFSGVDIALFSAG 72 (334)
T ss_pred CCEEEEECCCCHHHHHHHHHHHhCCCCcceEEEEEccccCCCeeeeCC----ceeEEe-eC-C-HHHHcCCCEEEECCC
Confidence 46999999999999999999988653 247777755443344333321 122221 11 2 245789999999875
No 375
>PF07993 NAD_binding_4: Male sterility protein; InterPro: IPR013120 This family represents the C-terminal NAD-binding region of the male sterility protein from Arabidopsis and Drosophila. A sequence-related jojoba acyl CoA reductase is also included.; PDB: 4DQV_A.
Probab=96.63 E-value=0.0084 Score=53.79 Aligned_cols=112 Identities=15% Similarity=0.118 Sum_probs=59.1
Q ss_pred EEcCCCccHHHHHHHHHhCCCccEEEEEeCCCch--h--HH-hhhhccc--------CCceEEEEecC----------CC
Q 022947 51 VLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP--G--VT-ADISHMD--------TNAVVRGFLGQ----------QQ 107 (289)
Q Consensus 51 IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~--g--~~-~DL~~~~--------~~~~v~~~~~t----------~d 107 (289)
|+||+||+|+++...|+..+...+|+++-+.... + .. ..+.+.. ...+++.+.+. .+
T Consensus 1 lTGaTGflG~~ll~~Ll~~~~~~~I~cLvR~~~~~~~~~rl~~~l~~~~~~~~~~~~~~~ri~~v~GDl~~~~lGL~~~~ 80 (249)
T PF07993_consen 1 LTGATGFLGSHLLEELLRQPPDVKIYCLVRASSSQSALERLKDALKEYGLWDDLDKEALSRIEVVEGDLSQPNLGLSDED 80 (249)
T ss_dssp EE-TTSHHHHHHHHHHHHHS-TTEEEEEE-SSSHHHHHHHHHGGG-SS-HHHHH-HHHTTTEEEEE--TTSGGGG--HHH
T ss_pred CcCCCcHHHHHHHHHHHcCCCCcEEEEEEeCcccccchhhhhhhcccccchhhhhhhhhccEEEEeccccccccCCChHH
Confidence 6899999999999888877642288888776511 1 11 1111110 02345544321 13
Q ss_pred HHhhhCCCCEEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecC
Q 022947 108 LEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISN 164 (289)
Q Consensus 108 ~~eal~~aDiVIitag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~aiviv~tN 164 (289)
+.+-.+.+|+||++|+.-. ...+..++...|+...+++++-..+.... .++.+|.
T Consensus 81 ~~~L~~~v~~IiH~Aa~v~-~~~~~~~~~~~NV~gt~~ll~la~~~~~~-~~~~iST 135 (249)
T PF07993_consen 81 YQELAEEVDVIIHCAASVN-FNAPYSELRAVNVDGTRNLLRLAAQGKRK-RFHYIST 135 (249)
T ss_dssp HHHHHHH--EEEE--SS-S-BS-S--EEHHHHHHHHHHHHHHHTSSS----EEEEEE
T ss_pred hhccccccceeeecchhhh-hcccchhhhhhHHHHHHHHHHHHHhccCc-ceEEecc
Confidence 4344489999999987532 12234456788999999999988854434 4444443
No 376
>PRK07677 short chain dehydrogenase; Provisional
Probab=96.62 E-value=0.053 Score=48.12 Aligned_cols=114 Identities=11% Similarity=0.081 Sum_probs=64.5
Q ss_pred CEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCc--hhHHhhhhcccCCceEEEEe-cCCC---HHh-------hhC
Q 022947 47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTNAVVRGFL-GQQQ---LED-------ALT 113 (289)
Q Consensus 47 ~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~--~g~~~DL~~~~~~~~v~~~~-~t~d---~~e-------al~ 113 (289)
+++.|+|++|.+|..++..|+..|. .|++.|++.. .....++.... ..+..+. +-+| .++ .+.
T Consensus 2 k~~lItG~s~giG~~ia~~l~~~G~--~Vi~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 77 (252)
T PRK07677 2 KVVIITGGSSGMGKAMAKRFAEEGA--NVVITGRTKEKLEEAKLEIEQFP--GQVLTVQMDVRNPEDVQKMVEQIDEKFG 77 (252)
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEecCCCHHHHHHHHHHHHHHhC
Confidence 4789999999999999999999997 8999998762 22222232211 1222111 1112 212 124
Q ss_pred CCCEEEEcCCCCCC-C--CCch---hhHHHhhHHHHHHHH----HHHHHhCCCcEEEEecC
Q 022947 114 GMDIVIIPAGVPRK-P--GMTR---DDLFNINAGIVKTLC----EGIAKCCPKAIVNLISN 164 (289)
Q Consensus 114 ~aDiVIitag~~~~-~--g~~r---~d~~~~N~~i~~~i~----~~i~~~~p~aiviv~tN 164 (289)
..|++|.++|.... + ..+. ...+..|+.....+. +.+.+..+.+.++++|.
T Consensus 78 ~id~lI~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~g~ii~isS 138 (252)
T PRK07677 78 RIDALINNAAGNFICPAEDLSVNGWNSVIDIVLNGTFYCSQAVGKYWIEKGIKGNIINMVA 138 (252)
T ss_pred CccEEEECCCCCCCCCcccCCHHHHHHHHhHhhHHHHHHHHHHHHHHHhcCCCEEEEEEcC
Confidence 67999999885321 1 2222 234555655444444 44443334567777663
No 377
>TIGR02685 pter_reduc_Leis pteridine reductase. Pteridine reductase is an enzyme used by trypanosomatids (including Trypanosoma cruzi and Leishmania major) to obtain reduced pteridines by salvage rather than biosynthetic pathways. Enzymes in T. cruzi described as pteridine reductase 1 (PTR1) and pteridine reductase 2 (PTR2) have different activity profiles. PTR1 is more active with with fully oxidized biopterin and folate than with reduced forms, while PTR2 reduces dihydrobiopterin and dihydrofolate but not oxidized pteridines. T. cruzi PTR1 and PTR2 are more similar to each other in sequence than either is to the pteridine reductase of Leishmania major, and all are included in this family.
Probab=96.61 E-value=0.071 Score=47.85 Aligned_cols=32 Identities=25% Similarity=0.227 Sum_probs=28.1
Q ss_pred EEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCC
Q 022947 48 KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVV 81 (289)
Q Consensus 48 KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~ 81 (289)
.+.|+||+|.+|..++..|+..|. +|++.+.+
T Consensus 3 ~~lITGas~gIG~~~a~~l~~~G~--~V~~~~~~ 34 (267)
T TIGR02685 3 AAVVTGAAKRIGSSIAVALHQEGY--RVVLHYHR 34 (267)
T ss_pred EEEEeCCCCcHHHHHHHHHHhCCC--eEEEEcCC
Confidence 688999999999999999999997 88887543
No 378
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=96.60 E-value=0.0087 Score=48.73 Aligned_cols=34 Identities=26% Similarity=0.395 Sum_probs=30.5
Q ss_pred CEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCC
Q 022947 47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN 82 (289)
Q Consensus 47 ~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~ 82 (289)
.||+|+|+ |.+|+.++..|+..|. .++.|+|.+.
T Consensus 3 ~~v~iiG~-G~vGs~va~~L~~~Gv-~~i~lvD~d~ 36 (135)
T PF00899_consen 3 KRVLIIGA-GGVGSEVAKNLARSGV-GKITLVDDDI 36 (135)
T ss_dssp -EEEEEST-SHHHHHHHHHHHHHTT-SEEEEEESSB
T ss_pred CEEEEECc-CHHHHHHHHHHHHhCC-CceeecCCcc
Confidence 59999998 9999999999999886 6999999875
No 379
>PRK05671 aspartate-semialdehyde dehydrogenase; Reviewed
Probab=96.58 E-value=0.0067 Score=57.43 Aligned_cols=72 Identities=21% Similarity=0.370 Sum_probs=45.9
Q ss_pred CCCEEEEEcCCCccHHHHHHHHHhCCC-ccEEEEEeCCCchhHHhhhhcccCCceEEEEecCCCHHhhhCCCCEEEEcCC
Q 022947 45 PGFKVAVLGAAGGIGQPLAMLMKINPL-VSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAG 123 (289)
Q Consensus 45 ~~~KI~IIGaaG~VGs~la~~L~~~g~-~~eI~LvD~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~eal~~aDiVIitag 123 (289)
+++||+|+||+|++|.-+...|..+++ ..++.++-..+..|+.+.+.. ..+... .. +. ++++++|+||++.+
T Consensus 3 ~~~~IaIvGATG~vG~eLlrlL~~~~hP~~~l~~v~s~~~aG~~l~~~~----~~l~~~-~~-~~-~~~~~vD~vFla~p 75 (336)
T PRK05671 3 QPLDIAVVGATGTVGEALVQILEERDFPVGTLHLLASSESAGHSVPFAG----KNLRVR-EV-DS-FDFSQVQLAFFAAG 75 (336)
T ss_pred CCCEEEEEccCCHHHHHHHHHHhhCCCCceEEEEEECcccCCCeeccCC----cceEEe-eC-Ch-HHhcCCCEEEEcCC
Confidence 347999999999999999998886542 357777755443343333222 122221 11 22 34789999999864
No 380
>PRK07792 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=96.58 E-value=0.047 Score=50.47 Aligned_cols=35 Identities=29% Similarity=0.336 Sum_probs=31.0
Q ss_pred CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCC
Q 022947 46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN 82 (289)
Q Consensus 46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~ 82 (289)
.+++.|+||+|.+|..++..|+..|. .|++.|...
T Consensus 12 ~k~~lVTGas~gIG~~ia~~L~~~Ga--~Vv~~~~~~ 46 (306)
T PRK07792 12 GKVAVVTGAAAGLGRAEALGLARLGA--TVVVNDVAS 46 (306)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCC--EEEEecCCc
Confidence 45899999999999999999999997 899998754
No 381
>PLN02968 Probable N-acetyl-gamma-glutamyl-phosphate reductase
Probab=96.58 E-value=0.0055 Score=59.01 Aligned_cols=77 Identities=14% Similarity=0.172 Sum_probs=46.8
Q ss_pred CCCCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchhHHhhhhccc-CCceEEEEecCCCHHhhhCCCCEEEEcC
Q 022947 44 SPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMD-TNAVVRGFLGQQQLEDALTGMDIVIIPA 122 (289)
Q Consensus 44 ~~~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g~~~DL~~~~-~~~~v~~~~~t~d~~eal~~aDiVIita 122 (289)
.+++||+|+||+|++|..+...|..++. .||.++..+...|+...-.+.. ....+..+. ..+ .+.++++|+||++.
T Consensus 36 ~~~~kVaIvGATG~vG~eLlrlL~~hP~-~el~~l~s~~saG~~i~~~~~~l~~~~~~~~~-~~~-~~~~~~~DvVf~Al 112 (381)
T PLN02968 36 EEKKRIFVLGASGYTGAEVRRLLANHPD-FEITVMTADRKAGQSFGSVFPHLITQDLPNLV-AVK-DADFSDVDAVFCCL 112 (381)
T ss_pred ccccEEEEECCCChHHHHHHHHHHhCCC-CeEEEEEChhhcCCCchhhCccccCcccccee-cCC-HHHhcCCCEEEEcC
Confidence 3567999999999999999998888853 3888887654333322111110 001111011 112 23479999999986
Q ss_pred C
Q 022947 123 G 123 (289)
Q Consensus 123 g 123 (289)
+
T Consensus 113 p 113 (381)
T PLN02968 113 P 113 (381)
T ss_pred C
Confidence 4
No 382
>PLN02350 phosphogluconate dehydrogenase (decarboxylating)
Probab=96.57 E-value=0.0099 Score=59.07 Aligned_cols=96 Identities=16% Similarity=0.166 Sum_probs=60.6
Q ss_pred CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchhHHhhhhcc----cCCceEEEEecCCCHHhhhCC---CCEE
Q 022947 46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHM----DTNAVVRGFLGQQQLEDALTG---MDIV 118 (289)
Q Consensus 46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g~~~DL~~~----~~~~~v~~~~~t~d~~eal~~---aDiV 118 (289)
.++|++||. |.+|+.+|..|+..|+ +|..+|+...+ +.++.+. .. ..+. ...++++..+. +|+|
T Consensus 6 ~~~IG~IGL-G~MG~~mA~nL~~~G~--~V~V~NRt~~k--~~~l~~~~~~~Ga-~~~~---~a~s~~e~v~~l~~~dvI 76 (493)
T PLN02350 6 LSRIGLAGL-AVMGQNLALNIAEKGF--PISVYNRTTSK--VDETVERAKKEGN-LPLY---GFKDPEDFVLSIQKPRSV 76 (493)
T ss_pred CCCEEEEee-HHHHHHHHHHHHhCCC--eEEEECCCHHH--HHHHHHhhhhcCC-cccc---cCCCHHHHHhcCCCCCEE
Confidence 458999998 9999999999999998 99999987522 2222221 10 1111 12345555554 9999
Q ss_pred EEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHh-CCCcEEEEecCC
Q 022947 119 IIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKC-CPKAIVNLISNP 165 (289)
Q Consensus 119 Iitag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~-~p~aiviv~tNP 165 (289)
|++.. +-+.++++...+... .|..++|-.||-
T Consensus 77 i~~v~---------------~~~aV~~Vi~gl~~~l~~G~iiID~sT~ 109 (493)
T PLN02350 77 IILVK---------------AGAPVDQTIKALSEYMEPGDCIIDGGNE 109 (493)
T ss_pred EEECC---------------CcHHHHHHHHHHHhhcCCCCEEEECCCC
Confidence 99852 123344444444444 367777776654
No 383
>TIGR01850 argC N-acetyl-gamma-glutamyl-phosphate reductase, common form. This model represents the more common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and the gap architecture in a multiple sequence alignment. Bacterial members of this family tend to be found within Arg biosynthesis operons.
Probab=96.56 E-value=0.0065 Score=57.69 Aligned_cols=74 Identities=23% Similarity=0.271 Sum_probs=44.2
Q ss_pred CEEEEEcCCCccHHHHHHHHHhCCCccEEE-EEeCCCchhHHhhhhcc--cCCceEEEEecCCCHHhhhCCCCEEEEcCC
Q 022947 47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLH-LYDVVNTPGVTADISHM--DTNAVVRGFLGQQQLEDALTGMDIVIIPAG 123 (289)
Q Consensus 47 ~KI~IIGaaG~VGs~la~~L~~~g~~~eI~-LvD~~~~~g~~~DL~~~--~~~~~v~~~~~t~d~~eal~~aDiVIitag 123 (289)
+||+|+||+|++|..++..|...+.. +++ +++.++..++...-.+. .....+. +. ..+.++.++++|+||++.+
T Consensus 1 ~kVaIiGATG~vG~ellr~L~~hP~~-el~~l~~s~~sagk~~~~~~~~l~~~~~~~-~~-~~~~~~~~~~~DvVf~alP 77 (346)
T TIGR01850 1 IKVAIVGASGYTGGELLRLLLNHPEV-EITYLVSSRESAGKPVSEVHPHLRGLVDLN-LE-PIDEEEIAEDADVVFLALP 77 (346)
T ss_pred CEEEEECCCCHHHHHHHHHHHcCCCc-eEEEEeccchhcCCChHHhCccccccCCce-ee-cCCHHHhhcCCCEEEECCC
Confidence 58999999999999999988877543 666 66765423332211111 0000111 11 1244444469999999864
No 384
>PRK12938 acetyacetyl-CoA reductase; Provisional
Probab=96.55 E-value=0.068 Score=47.05 Aligned_cols=31 Identities=19% Similarity=0.206 Sum_probs=26.9
Q ss_pred CEEEEEcCCCccHHHHHHHHHhCCCccEEEEEe
Q 022947 47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYD 79 (289)
Q Consensus 47 ~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD 79 (289)
+.+.|+|++|.+|..++..|+..|. ++++..
T Consensus 4 k~~lVtG~s~giG~~~a~~l~~~G~--~vv~~~ 34 (246)
T PRK12938 4 RIAYVTGGMGGIGTSICQRLHKDGF--KVVAGC 34 (246)
T ss_pred CEEEEECCCChHHHHHHHHHHHcCC--EEEEEc
Confidence 4689999999999999999999997 777753
No 385
>PRK05872 short chain dehydrogenase; Provisional
Probab=96.55 E-value=0.014 Score=53.53 Aligned_cols=114 Identities=23% Similarity=0.269 Sum_probs=64.8
Q ss_pred CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCc--hhHHhhhhcccCCceEEEE-ecCCCH---H-------hhh
Q 022947 46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTNAVVRGF-LGQQQL---E-------DAL 112 (289)
Q Consensus 46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~--~g~~~DL~~~~~~~~v~~~-~~t~d~---~-------eal 112 (289)
.+++.|+||+|.+|..++..|+..|. +|+++++++. .....++... ..+..+ .+-+|. + +.+
T Consensus 9 gk~vlItGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~l~~~~~~l~~~---~~~~~~~~Dv~d~~~v~~~~~~~~~~~ 83 (296)
T PRK05872 9 GKVVVVTGAARGIGAELARRLHARGA--KLALVDLEEAELAALAAELGGD---DRVLTVVADVTDLAAMQAAAEEAVERF 83 (296)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHhcCC---CcEEEEEecCCCHHHHHHHHHHHHHHc
Confidence 35899999999999999999999997 8999998762 2222223211 111110 111121 1 123
Q ss_pred CCCCEEEEcCCCCCCC---CCc---hhhHHHhhHHHHHHHHHHHHHhC--CCcEEEEecC
Q 022947 113 TGMDIVIIPAGVPRKP---GMT---RDDLFNINAGIVKTLCEGIAKCC--PKAIVNLISN 164 (289)
Q Consensus 113 ~~aDiVIitag~~~~~---g~~---r~d~~~~N~~i~~~i~~~i~~~~--p~aiviv~tN 164 (289)
...|+||.++|..... ..+ -.+.+..|+.....+++.+..+- ..+.|+++|.
T Consensus 84 g~id~vI~nAG~~~~~~~~~~~~~~~~~~~~vn~~g~~~l~~~~~~~~~~~~g~iv~isS 143 (296)
T PRK05872 84 GGIDVVVANAGIASGGSVAQVDPDAFRRVIDVNLLGVFHTVRATLPALIERRGYVLQVSS 143 (296)
T ss_pred CCCCEEEECCCcCCCcCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCEEEEEeC
Confidence 5689999999964311 111 12345566655555554443321 3456666654
No 386
>PRK06484 short chain dehydrogenase; Validated
Probab=96.53 E-value=0.023 Score=56.16 Aligned_cols=147 Identities=16% Similarity=0.184 Sum_probs=80.2
Q ss_pred CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCch--hHHhhhhcccCCceEEE-EecCCCHHhh-------hCCC
Q 022947 46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP--GVTADISHMDTNAVVRG-FLGQQQLEDA-------LTGM 115 (289)
Q Consensus 46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~--g~~~DL~~~~~~~~v~~-~~~t~d~~ea-------l~~a 115 (289)
.+++.|+||+|.+|..++..|+..|. +|+++|+++.. ....++.... ..+.. .....++++. +...
T Consensus 269 ~k~~lItGas~gIG~~~a~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~--~~~~~D~~~~~~~~~~~~~~~~~~g~i 344 (520)
T PRK06484 269 PRVVAITGGARGIGRAVADRFAAAGD--RLLIIDRDAEGAKKLAEALGDEH--LSVQADITDEAAVESAFAQIQARWGRL 344 (520)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHhCCce--eEEEccCCCHHHHHHHHHHHHHHcCCC
Confidence 46899999999999999999999997 89999987521 1111111100 00110 1111112222 2457
Q ss_pred CEEEEcCCCCC--CC--CCc---hhhHHHhhHHHHHHHHHHHHHh-CCCcEEEEecCCCcccHHHHHHHHHHhCCCCCCc
Q 022947 116 DIVIIPAGVPR--KP--GMT---RDDLFNINAGIVKTLCEGIAKC-CPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKR 187 (289)
Q Consensus 116 DiVIitag~~~--~~--g~~---r~d~~~~N~~i~~~i~~~i~~~-~p~aiviv~tNPvd~~t~~~~~~~~~~~~~~~~k 187 (289)
|++|.+||... .+ ..+ ....+..|+.....+.+.+..+ ...+.|+++|...... +.+..-
T Consensus 345 d~li~nAg~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~------------~~~~~~ 412 (520)
T PRK06484 345 DVLVNNAGIAEVFKPSLEQSAEDFTRVYDVNLSGAFACARAAARLMSQGGVIVNLGSIASLL------------ALPPRN 412 (520)
T ss_pred CEEEECCCCcCCCCChhhCCHHHHHHHHHhCcHHHHHHHHHHHHHhccCCEEEEECchhhcC------------CCCCCc
Confidence 99999999742 11 112 2334566766555555554443 2356777776543221 233333
Q ss_pred EEEeeeccHHHHHHHHHHHcC
Q 022947 188 LLGVTMLDVVRANTFVAEVLG 208 (289)
Q Consensus 188 viG~t~lds~R~~~~lA~~l~ 208 (289)
.++.+..--..+-+.+++.++
T Consensus 413 ~Y~asKaal~~l~~~la~e~~ 433 (520)
T PRK06484 413 AYCASKAAVTMLSRSLACEWA 433 (520)
T ss_pred hhHHHHHHHHHHHHHHHHHhh
Confidence 444433223345566666663
No 387
>PRK08324 short chain dehydrogenase; Validated
Probab=96.53 E-value=0.02 Score=59.09 Aligned_cols=114 Identities=22% Similarity=0.256 Sum_probs=64.3
Q ss_pred CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCc--hhHHhhhhcccCCceEEEEe-cCCC---HHhhh-------
Q 022947 46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTNAVVRGFL-GQQQ---LEDAL------- 112 (289)
Q Consensus 46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~--~g~~~DL~~~~~~~~v~~~~-~t~d---~~eal------- 112 (289)
.++|.|+||+|.+|..++..|+..|. +|+++|++.. .....++... ..+..+. +-+| .++++
T Consensus 422 gk~vLVTGasggIG~~la~~L~~~Ga--~Vvl~~r~~~~~~~~~~~l~~~---~~v~~v~~Dvtd~~~v~~~~~~~~~~~ 496 (681)
T PRK08324 422 GKVALVTGAAGGIGKATAKRLAAEGA--CVVLADLDEEAAEAAAAELGGP---DRALGVACDVTDEAAVQAAFEEAALAF 496 (681)
T ss_pred CCEEEEecCCCHHHHHHHHHHHHCcC--EEEEEeCCHHHHHHHHHHHhcc---CcEEEEEecCCCHHHHHHHHHHHHHHc
Confidence 46899999999999999999999997 8999998762 1112222221 1111110 1112 22222
Q ss_pred CCCCEEEEcCCCCCCC---CCch---hhHHHhhHHHHHHH----HHHHHHhCCCcEEEEecC
Q 022947 113 TGMDIVIIPAGVPRKP---GMTR---DDLFNINAGIVKTL----CEGIAKCCPKAIVNLISN 164 (289)
Q Consensus 113 ~~aDiVIitag~~~~~---g~~r---~d~~~~N~~i~~~i----~~~i~~~~p~aiviv~tN 164 (289)
.+.|+||.++|..... ..+. ...+..|+.....+ .+.+++....+.+++++.
T Consensus 497 g~iDvvI~~AG~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~g~iV~vsS 558 (681)
T PRK08324 497 GGVDIVVSNAGIAISGPIEETSDEDWRRSFDVNATGHFLVAREAVRIMKAQGLGGSIVFIAS 558 (681)
T ss_pred CCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCcEEEEECC
Confidence 3789999999864321 1111 12344555544444 444444333356666553
No 388
>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase. Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.
Probab=96.52 E-value=0.0028 Score=60.66 Aligned_cols=73 Identities=25% Similarity=0.305 Sum_probs=44.4
Q ss_pred EEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCch--hHHhhhhcccCCceEEEE--ecCCCHHhhhCCCCEEEEcCCC
Q 022947 49 VAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP--GVTADISHMDTNAVVRGF--LGQQQLEDALTGMDIVIIPAGV 124 (289)
Q Consensus 49 I~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~--g~~~DL~~~~~~~~v~~~--~~t~d~~eal~~aDiVIitag~ 124 (289)
|.|+|+ |.||+.++..|++.+...+|++.|++... ....++ ... ....... ....++.+.++++|+||.|+|.
T Consensus 1 IlvlG~-G~vG~~~~~~L~~~~~~~~v~va~r~~~~~~~~~~~~-~~~-~~~~~~~d~~~~~~l~~~~~~~dvVin~~gp 77 (386)
T PF03435_consen 1 ILVLGA-GRVGSAIARLLARRGPFEEVTVADRNPEKAERLAEKL-LGD-RVEAVQVDVNDPESLAELLRGCDVVINCAGP 77 (386)
T ss_dssp EEEE---SHHHHHHHHHHHCTTCE-EEEEEESSHHHHHHHHT---TTT-TEEEEE--TTTHHHHHHHHTTSSEEEE-SSG
T ss_pred CEEEcC-cHHHHHHHHHHhcCCCCCcEEEEECCHHHHHHHHhhc-ccc-ceeEEEEecCCHHHHHHHHhcCCEEEECCcc
Confidence 789999 99999999999988765699999998632 222211 111 1111111 1112356778999999999874
No 389
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=96.51 E-value=0.011 Score=54.73 Aligned_cols=95 Identities=23% Similarity=0.257 Sum_probs=59.9
Q ss_pred CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchhHHhhhhcccCCceEEEEecCCCHHhhhCCCCEEEEcCCCC
Q 022947 46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVP 125 (289)
Q Consensus 46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~eal~~aDiVIitag~~ 125 (289)
..||+|+|+ |.+|..++..|...|. +|.++|+++... ..+.... ...+. ..++.+.++++|+||.+....
T Consensus 151 gk~v~IiG~-G~iG~avA~~L~~~G~--~V~v~~R~~~~~--~~~~~~g----~~~~~-~~~l~~~l~~aDiVint~P~~ 220 (287)
T TIGR02853 151 GSNVMVLGF-GRTGMTIARTFSALGA--RVFVGARSSADL--ARITEMG----LIPFP-LNKLEEKVAEIDIVINTIPAL 220 (287)
T ss_pred CCEEEEEcC-hHHHHHHHHHHHHCCC--EEEEEeCCHHHH--HHHHHCC----Ceeec-HHHHHHHhccCCEEEECCChH
Confidence 458999998 9999999999998886 899999875211 1111111 11111 134667889999999985211
Q ss_pred CCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEe-cCCCcc
Q 022947 126 RKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLI-SNPVNS 168 (289)
Q Consensus 126 ~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~aiviv~-tNPvd~ 168 (289)
++ + .+ .+....|+++++.+ ++|-.+
T Consensus 221 ---------ii--~----~~---~l~~~k~~aliIDlas~Pg~t 246 (287)
T TIGR02853 221 ---------VL--T----AD---VLSKLPKHAVIIDLASKPGGT 246 (287)
T ss_pred ---------Hh--C----HH---HHhcCCCCeEEEEeCcCCCCC
Confidence 11 1 11 23334567888766 677654
No 390
>PRK06114 short chain dehydrogenase; Provisional
Probab=96.51 E-value=0.027 Score=50.17 Aligned_cols=35 Identities=31% Similarity=0.420 Sum_probs=31.3
Q ss_pred CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCC
Q 022947 46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN 82 (289)
Q Consensus 46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~ 82 (289)
.+++.|+|++|.+|..++..|+..|. +|++.|++.
T Consensus 8 ~k~~lVtG~s~gIG~~ia~~l~~~G~--~v~~~~r~~ 42 (254)
T PRK06114 8 GQVAFVTGAGSGIGQRIAIGLAQAGA--DVALFDLRT 42 (254)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCC--EEEEEeCCc
Confidence 34899999999999999999999997 899999865
No 391
>PRK06483 dihydromonapterin reductase; Provisional
Probab=96.50 E-value=0.07 Score=46.77 Aligned_cols=35 Identities=17% Similarity=0.107 Sum_probs=31.4
Q ss_pred CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCC
Q 022947 46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN 82 (289)
Q Consensus 46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~ 82 (289)
++++.|+|++|.+|..++..|+..|. +|++.|+++
T Consensus 2 ~k~vlItGas~gIG~~ia~~l~~~G~--~V~~~~r~~ 36 (236)
T PRK06483 2 PAPILITGAGQRIGLALAWHLLAQGQ--PVIVSYRTH 36 (236)
T ss_pred CceEEEECCCChHHHHHHHHHHHCCC--eEEEEeCCc
Confidence 35799999999999999999999997 899999876
No 392
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=96.50 E-value=0.024 Score=50.17 Aligned_cols=35 Identities=31% Similarity=0.464 Sum_probs=31.3
Q ss_pred CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCC
Q 022947 46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN 82 (289)
Q Consensus 46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~ 82 (289)
..||+|+|+ |.+|+.++..|+..|. .++.++|.+.
T Consensus 28 ~~~V~ViG~-GglGs~ia~~La~~Gv-g~i~lvD~D~ 62 (212)
T PRK08644 28 KAKVGIAGA-GGLGSNIAVALARSGV-GNLKLVDFDV 62 (212)
T ss_pred CCCEEEECc-CHHHHHHHHHHHHcCC-CeEEEEeCCE
Confidence 458999998 9999999999999986 5899999884
No 393
>cd05312 NAD_bind_1_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 1. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists of eukaryotic and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH
Probab=96.49 E-value=0.0042 Score=57.21 Aligned_cols=107 Identities=21% Similarity=0.316 Sum_probs=71.9
Q ss_pred CCEEEEEcCCCccHHHHHHHHHhC----CCc-----cEEEEEeCCC--chhHHhhhhccc---C-CceEEEEecCCCHHh
Q 022947 46 GFKVAVLGAAGGIGQPLAMLMKIN----PLV-----SVLHLYDVVN--TPGVTADISHMD---T-NAVVRGFLGQQQLED 110 (289)
Q Consensus 46 ~~KI~IIGaaG~VGs~la~~L~~~----g~~-----~eI~LvD~~~--~~g~~~DL~~~~---~-~~~v~~~~~t~d~~e 110 (289)
..||.|.|| |.-|..++..|... |+- ..++++|.+- .... .||.+.. . ...-. ...++.|
T Consensus 25 d~~iv~~GA-GsAg~gia~ll~~~~~~~G~~~eeA~~~i~~vD~~Gll~~~r-~~l~~~~~~~a~~~~~~---~~~~L~e 99 (279)
T cd05312 25 DQRILFLGA-GSAGIGIADLIVSAMVREGLSEEEARKKIWLVDSKGLLTKDR-KDLTPFKKPFARKDEEK---EGKSLLE 99 (279)
T ss_pred hcEEEEECc-CHHHHHHHHHHHHHHHHcCCChhhccCeEEEEcCCCeEeCCC-CcchHHHHHHHhhcCcc---cCCCHHH
Confidence 459999999 99999999777653 652 5899999875 1111 1121110 0 00001 1247899
Q ss_pred hhC--CCCEEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecCCCc--ccHH
Q 022947 111 ALT--GMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVN--STVP 171 (289)
Q Consensus 111 al~--~aDiVIitag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~aiviv~tNPvd--~~t~ 171 (289)
+++ ++|++|=+.+.+ | -+.+++.+.|.+++++.+|+-.|||.. -+++
T Consensus 100 ~i~~v~ptvlIG~S~~~---g-----------~ft~evv~~Ma~~~~~PIIFaLSNPt~~~E~~p 150 (279)
T cd05312 100 VVKAVKPTVLIGLSGVG---G-----------AFTEEVVRAMAKSNERPIIFALSNPTSKAECTA 150 (279)
T ss_pred HHHhcCCCEEEEeCCCC---C-----------CCCHHHHHHHHhcCCCCEEEECCCcCCccccCH
Confidence 999 999988765433 2 124678889999999999999999986 4554
No 394
>PRK07984 enoyl-(acyl carrier protein) reductase; Provisional
Probab=96.49 E-value=0.058 Score=48.80 Aligned_cols=35 Identities=23% Similarity=0.209 Sum_probs=29.3
Q ss_pred CCEEEEEcCCC--ccHHHHHHHHHhCCCccEEEEEeCCC
Q 022947 46 GFKVAVLGAAG--GIGQPLAMLMKINPLVSVLHLYDVVN 82 (289)
Q Consensus 46 ~~KI~IIGaaG--~VGs~la~~L~~~g~~~eI~LvD~~~ 82 (289)
.+.+.|+||++ -+|..++..|++.|. .|++.|++.
T Consensus 6 ~k~~lITGas~~~GIG~aia~~la~~G~--~vil~~r~~ 42 (262)
T PRK07984 6 GKRILVTGVASKLSIAYGIAQAMHREGA--ELAFTYQND 42 (262)
T ss_pred CCEEEEeCCCCCccHHHHHHHHHHHCCC--EEEEEecch
Confidence 45789999953 699999999999997 889988764
No 395
>TIGR01829 AcAcCoA_reduct acetoacetyl-CoA reductase. (R)-3-hydroxyacyl-CoA + NADP+ = 3-oxoacyl-CoA + NADPH. Members of this family may act in the biosynthesis of poly-beta-hydroxybutyrate (e.g. Rhizobium meliloti) and related poly-beta-hydroxyalkanoates. Note that the member of this family from Azospirillum brasilense, designated NodG, appears to lack acetoacetyl-CoA reductase activity and to act instead in the production of nodulation factor. This family is downgraded to subfamily for this NodG. Other proteins designated NodG, as from Rhizobium, belong to related but distinct protein families.
Probab=96.49 E-value=0.087 Score=46.02 Aligned_cols=31 Identities=19% Similarity=0.220 Sum_probs=27.8
Q ss_pred EEEEEcCCCccHHHHHHHHHhCCCccEEEEEeC
Q 022947 48 KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDV 80 (289)
Q Consensus 48 KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~ 80 (289)
.+.|+|++|.+|..++..|+..|. +++++..
T Consensus 2 ~~lItG~sg~iG~~la~~l~~~G~--~v~~~~r 32 (242)
T TIGR01829 2 IALVTGGMGGIGTAICQRLAKDGY--RVAANCG 32 (242)
T ss_pred EEEEECCCChHHHHHHHHHHHCCC--EEEEEeC
Confidence 578999999999999999999997 7888876
No 396
>PLN02383 aspartate semialdehyde dehydrogenase
Probab=96.49 E-value=0.0082 Score=57.03 Aligned_cols=72 Identities=24% Similarity=0.390 Sum_probs=46.8
Q ss_pred CCCEEEEEcCCCccHHHHHHHHHhCCC-ccEEEEEeCCCchhHHhhhhcccCCceEEEEecCCCHHhhhCCCCEEEEcCC
Q 022947 45 PGFKVAVLGAAGGIGQPLAMLMKINPL-VSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAG 123 (289)
Q Consensus 45 ~~~KI~IIGaaG~VGs~la~~L~~~g~-~~eI~LvD~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~eal~~aDiVIitag 123 (289)
.++||+|+||+|++|..+...|..+++ ..++..+...+..|+..+... ..+..- ..+ .+++.++|+||++++
T Consensus 6 ~~~kVaVvGAtG~vG~eLlrlL~~~~hP~~~l~~las~rsaGk~~~~~~----~~~~v~--~~~-~~~~~~~D~vf~a~p 78 (344)
T PLN02383 6 NGPSVAIVGVTGAVGQEFLSVLTDRDFPYSSLKMLASARSAGKKVTFEG----RDYTVE--ELT-EDSFDGVDIALFSAG 78 (344)
T ss_pred CCCeEEEEcCCChHHHHHHHHHHhCCCCcceEEEEEccCCCCCeeeecC----ceeEEE--eCC-HHHHcCCCEEEECCC
Confidence 457999999999999999988887543 357777755443333332211 122221 113 256799999999875
No 397
>TIGR01724 hmd_rel H2-forming N(5),N(10)-methenyltetrahydromethanopterin dehydrogenase-related protein. This model represents a sister clade to the authenticated coenzyme F420-dependent N(5),N(10)-methenyltetrahydromethanopterin reductase (HMD) of TIGR01723. Two members, designated HmdII and HmdIII, are found. Members are restricted to methanogens, but the function is unknown.
Probab=96.48 E-value=0.041 Score=51.69 Aligned_cols=96 Identities=16% Similarity=0.135 Sum_probs=59.0
Q ss_pred CEEEEEcCCCc--------------------cHHHHHHHHHhCCCccEEEEEeCCCc---hhHHhhhhcccCCceEEEEe
Q 022947 47 FKVAVLGAAGG--------------------IGQPLAMLMKINPLVSVLHLYDVVNT---PGVTADISHMDTNAVVRGFL 103 (289)
Q Consensus 47 ~KI~IIGaaG~--------------------VGs~la~~L~~~g~~~eI~LvD~~~~---~g~~~DL~~~~~~~~v~~~~ 103 (289)
|||+|-|| |+ =|+.+|..|+..|+ +|+++|+++. ......+.+... ..
T Consensus 1 ~~~~~~g~-gnq~ly~~~~~~~~~~gg~~p~gGspMArnLlkAGh--eV~V~Drnrsa~e~e~~e~LaeaGA----~~-- 71 (341)
T TIGR01724 1 MKVSVYGA-GNQKLYTDELNLPEKFGGEPPYGGSRMAIEFAMAGH--DVVLAEPNREFMSDDLWKKVEDAGV----KV-- 71 (341)
T ss_pred CeeEEecC-cchhHHHHHhCChhhcCCCCCCCHHHHHHHHHHCCC--EEEEEeCChhhhhhhhhHHHHHCCC----ee--
Confidence 57888887 74 47889999999998 9999998762 122233333221 11
Q ss_pred cCCCHHhhhCCCCEEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecCCCc
Q 022947 104 GQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVN 167 (289)
Q Consensus 104 ~t~d~~eal~~aDiVIitag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~aiviv~tNPvd 167 (289)
.++..++.+++|+||++.. |-+.++++++.+....+.+.+++-+-.++
T Consensus 72 -AaS~aEAAa~ADVVIL~LP---------------d~aaV~eVl~GLaa~L~~GaIVID~STIs 119 (341)
T TIGR01724 72 -VSDDKEAAKHGEIHVLFTP---------------FGKGTFSIARTIIEHVPENAVICNTCTVS 119 (341)
T ss_pred -cCCHHHHHhCCCEEEEecC---------------CHHHHHHHHHHHHhcCCCCCEEEECCCCC
Confidence 2356789999999999853 33444555555555554433333333333
No 398
>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=96.48 E-value=0.023 Score=50.01 Aligned_cols=35 Identities=23% Similarity=0.362 Sum_probs=31.3
Q ss_pred CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCC
Q 022947 46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN 82 (289)
Q Consensus 46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~ 82 (289)
.+++.|+|++|.+|..++..|+..|. .|+++|.++
T Consensus 5 ~~~~lItG~~g~iG~~~a~~l~~~G~--~vi~~~r~~ 39 (253)
T PRK08217 5 DKVIVITGGAQGLGRAMAEYLAQKGA--KLALIDLNQ 39 (253)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCC--EEEEEeCCH
Confidence 45899999999999999999999887 899999876
No 399
>PRK13302 putative L-aspartate dehydrogenase; Provisional
Probab=96.47 E-value=0.022 Score=52.30 Aligned_cols=70 Identities=26% Similarity=0.250 Sum_probs=45.2
Q ss_pred CCCCEEEEEcCCCccHHHHHHHHHhC--CCccEEE-EEeCCCchhHHhhhhcccCCceEEEEecCCCHHhhhCCCCEEEE
Q 022947 44 SPGFKVAVLGAAGGIGQPLAMLMKIN--PLVSVLH-LYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVII 120 (289)
Q Consensus 44 ~~~~KI~IIGaaG~VGs~la~~L~~~--g~~~eI~-LvD~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~eal~~aDiVIi 120 (289)
++++||+|||. |.+|..++..|... ++ +|+ ++|.++.. +.++.... . .... .+++++.+.++|+|++
T Consensus 4 m~~irIGIIG~-G~IG~~~a~~L~~~~~~~--el~aV~dr~~~~--a~~~a~~~-g-~~~~---~~~~eell~~~D~Vvi 73 (271)
T PRK13302 4 RPELRVAIAGL-GAIGKAIAQALDRGLPGL--TLSAVAVRDPQR--HADFIWGL-R-RPPP---VVPLDQLATHADIVVE 73 (271)
T ss_pred CCeeEEEEECc-cHHHHHHHHHHHhcCCCe--EEEEEECCCHHH--HHHHHHhc-C-CCcc---cCCHHHHhcCCCEEEE
Confidence 45679999998 99999999888763 43 554 77876522 12222110 0 0011 2356777899999999
Q ss_pred cCC
Q 022947 121 PAG 123 (289)
Q Consensus 121 tag 123 (289)
+++
T Consensus 74 ~tp 76 (271)
T PRK13302 74 AAP 76 (271)
T ss_pred CCC
Confidence 975
No 400
>PRK00048 dihydrodipicolinate reductase; Provisional
Probab=96.44 E-value=0.14 Score=46.44 Aligned_cols=68 Identities=26% Similarity=0.276 Sum_probs=43.4
Q ss_pred CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchhHHhhhhcccCCceEEEEecCCCHHhhhCCCCEEEEcC
Q 022947 46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPA 122 (289)
Q Consensus 46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~eal~~aDiVIita 122 (289)
++||+|+|++|.+|+.++..+...+-..-+.++|.+....... . ...+. ..+|+++.++++|+||.+.
T Consensus 1 ~mkV~IiG~~G~mG~~i~~~l~~~~~~elvav~d~~~~~~~~~--~----~~~i~---~~~dl~~ll~~~DvVid~t 68 (257)
T PRK00048 1 MIKVAVAGASGRMGRELIEAVEAAEDLELVAAVDRPGSPLVGQ--G----ALGVA---ITDDLEAVLADADVLIDFT 68 (257)
T ss_pred CcEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCcccccc--C----CCCcc---ccCCHHHhccCCCEEEECC
Confidence 4799999988999999998777654333344577765211111 1 11222 1357777788999999664
No 401
>PRK06940 short chain dehydrogenase; Provisional
Probab=96.43 E-value=0.029 Score=50.96 Aligned_cols=112 Identities=19% Similarity=0.205 Sum_probs=61.4
Q ss_pred EEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCc--hhHHhhhhcccCCceEEEEe-cCCC---HHhh------hCCC
Q 022947 48 KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTNAVVRGFL-GQQQ---LEDA------LTGM 115 (289)
Q Consensus 48 KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~--~g~~~DL~~~~~~~~v~~~~-~t~d---~~ea------l~~a 115 (289)
.+.|+|+ |.+|..++..|. .|. +|++.|+++. .....++... ..++..+. +-.| .++. +...
T Consensus 4 ~~lItGa-~gIG~~la~~l~-~G~--~Vv~~~r~~~~~~~~~~~l~~~--~~~~~~~~~Dv~d~~~i~~~~~~~~~~g~i 77 (275)
T PRK06940 4 VVVVIGA-GGIGQAIARRVG-AGK--KVLLADYNEENLEAAAKTLREA--GFDVSTQEVDVSSRESVKALAATAQTLGPV 77 (275)
T ss_pred EEEEECC-ChHHHHHHHHHh-CCC--EEEEEeCCHHHHHHHHHHHHhc--CCeEEEEEeecCCHHHHHHHHHHHHhcCCC
Confidence 4666776 899999999886 676 8999998752 1112223221 11222111 1112 2222 2468
Q ss_pred CEEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHh-CCCcEEEEecCCC
Q 022947 116 DIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKC-CPKAIVNLISNPV 166 (289)
Q Consensus 116 DiVIitag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~-~p~aiviv~tNPv 166 (289)
|++|.+||.... ..+-.+.+..|+.....+++.+.+. .+++.+++++...
T Consensus 78 d~li~nAG~~~~-~~~~~~~~~vN~~g~~~l~~~~~~~m~~~g~iv~isS~~ 128 (275)
T PRK06940 78 TGLVHTAGVSPS-QASPEAILKVDLYGTALVLEEFGKVIAPGGAGVVIASQS 128 (275)
T ss_pred CEEEECCCcCCc-hhhHHHHHHHhhHHHHHHHHHHHHHHhhCCCEEEEEecc
Confidence 999999997532 2233456677776665555555443 1334445554433
No 402
>PRK06079 enoyl-(acyl carrier protein) reductase; Provisional
Probab=96.42 E-value=0.031 Score=49.93 Aligned_cols=35 Identities=23% Similarity=0.159 Sum_probs=30.1
Q ss_pred CCEEEEEcCC--CccHHHHHHHHHhCCCccEEEEEeCCC
Q 022947 46 GFKVAVLGAA--GGIGQPLAMLMKINPLVSVLHLYDVVN 82 (289)
Q Consensus 46 ~~KI~IIGaa--G~VGs~la~~L~~~g~~~eI~LvD~~~ 82 (289)
.+.+.|+||+ +-+|..++..|+..|. +|++.++++
T Consensus 7 ~k~~lItGas~~~gIG~a~a~~la~~G~--~Vi~~~r~~ 43 (252)
T PRK06079 7 GKKIVVMGVANKRSIAWGCAQAIKDQGA--TVIYTYQND 43 (252)
T ss_pred CCEEEEeCCCCCCchHHHHHHHHHHCCC--EEEEecCch
Confidence 3579999997 5899999999999997 899998764
No 403
>PRK08261 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=96.41 E-value=0.049 Score=53.01 Aligned_cols=118 Identities=20% Similarity=0.240 Sum_probs=68.2
Q ss_pred CCCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchhHHhhhhcccCCceEE-EEecCCCHHhh-------hCCCC
Q 022947 45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVR-GFLGQQQLEDA-------LTGMD 116 (289)
Q Consensus 45 ~~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g~~~DL~~~~~~~~v~-~~~~t~d~~ea-------l~~aD 116 (289)
+.+++.|+|++|.+|..++..|+..|. +|+++|.........++........+. ......+.++. +...|
T Consensus 209 ~g~~vlItGasggIG~~la~~l~~~Ga--~vi~~~~~~~~~~l~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~~~g~id 286 (450)
T PRK08261 209 AGKVALVTGAARGIGAAIAEVLARDGA--HVVCLDVPAAGEALAAVANRVGGTALALDITAPDAPARIAEHLAERHGGLD 286 (450)
T ss_pred CCCEEEEecCCCHHHHHHHHHHHHCCC--EEEEEeCCccHHHHHHHHHHcCCeEEEEeCCCHHHHHHHHHHHHHhCCCCC
Confidence 346899999999999999999999997 899998854221112221110000111 11111111111 23689
Q ss_pred EEEEcCCCCCCC---CCc---hhhHHHhhHHHHHHHHHHHHHh---CCCcEEEEecC
Q 022947 117 IVIIPAGVPRKP---GMT---RDDLFNINAGIVKTLCEGIAKC---CPKAIVNLISN 164 (289)
Q Consensus 117 iVIitag~~~~~---g~~---r~d~~~~N~~i~~~i~~~i~~~---~p~aiviv~tN 164 (289)
+||+++|..... ..+ ....+..|+.....+.+.+... .+.+.|+++|.
T Consensus 287 ~vi~~AG~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~g~iv~~SS 343 (450)
T PRK08261 287 IVVHNAGITRDKTLANMDEARWDSVLAVNLLAPLRITEALLAAGALGDGGRIVGVSS 343 (450)
T ss_pred EEEECCCcCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHhhhhcCCCEEEEECC
Confidence 999999865321 111 2234567777777777766552 24566776664
No 404
>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase. This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.
Probab=96.41 E-value=0.014 Score=58.59 Aligned_cols=92 Identities=25% Similarity=0.345 Sum_probs=59.3
Q ss_pred CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchhHHhhhhcccCCceEEEEecCCCHHhhhCCCCEEEEcCCCC
Q 022947 46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVP 125 (289)
Q Consensus 46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~eal~~aDiVIitag~~ 125 (289)
.++|+|+|. |.+|+.+|..|...|. +|+.+|.........++. +.. .+++++.+++||+|+++....
T Consensus 138 gktvgIiG~-G~IG~~vA~~l~~fG~--~V~~~d~~~~~~~~~~~g-------~~~---~~~l~ell~~aDvV~l~lPlt 204 (525)
T TIGR01327 138 GKTLGVIGL-GRIGSIVAKRAKAFGM--KVLAYDPYISPERAEQLG-------VEL---VDDLDELLARADFITVHTPLT 204 (525)
T ss_pred CCEEEEECC-CHHHHHHHHHHHhCCC--EEEEECCCCChhHHHhcC-------CEE---cCCHHHHHhhCCEEEEccCCC
Confidence 468999998 9999999999988887 999999753221222211 111 135788899999999985321
Q ss_pred CCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEec
Q 022947 126 RKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLIS 163 (289)
Q Consensus 126 ~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~aiviv~t 163 (289)
+ +++. ++ | .+.+....|.+++++++
T Consensus 205 --~-~T~~-li--~-------~~~l~~mk~ga~lIN~a 229 (525)
T TIGR01327 205 --P-ETRG-LI--G-------AEELAKMKKGVIIVNCA 229 (525)
T ss_pred --h-hhcc-Cc--C-------HHHHhcCCCCeEEEEcC
Confidence 1 1111 11 1 13344445788888875
No 405
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=96.41 E-value=0.024 Score=53.69 Aligned_cols=35 Identities=23% Similarity=0.253 Sum_probs=31.4
Q ss_pred CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCC
Q 022947 46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN 82 (289)
Q Consensus 46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~ 82 (289)
..||.|||+ |.+|+.++..|+..|+ .+|.++|.+.
T Consensus 24 ~~~VlIiG~-GglGs~va~~La~aGv-g~i~lvD~D~ 58 (338)
T PRK12475 24 EKHVLIVGA-GALGAANAEALVRAGI-GKLTIADRDY 58 (338)
T ss_pred CCcEEEECC-CHHHHHHHHHHHHcCC-CEEEEEcCCc
Confidence 458999998 9999999999999995 5999999875
No 406
>PRK06484 short chain dehydrogenase; Validated
Probab=96.41 E-value=0.034 Score=54.95 Aligned_cols=35 Identities=29% Similarity=0.211 Sum_probs=31.2
Q ss_pred CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCC
Q 022947 46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN 82 (289)
Q Consensus 46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~ 82 (289)
.+.+.|+|+++.+|..++..|+..|. .|+++|++.
T Consensus 5 ~k~~lITGas~gIG~aia~~l~~~G~--~V~~~~r~~ 39 (520)
T PRK06484 5 SRVVLVTGAAGGIGRAACQRFARAGD--QVVVADRNV 39 (520)
T ss_pred CeEEEEECCCcHHHHHHHHHHHHCCC--EEEEEeCCH
Confidence 35788999999999999999999997 899999875
No 407
>TIGR01692 HIBADH 3-hydroxyisobutyrate dehydrogenase. This enzyme belongs to the 3-hydroxyacid dehydrogenase family, sharing a common evolutionary origin and enzymatic mechanism with 6-phosphogluconate. HIBADH exhibits sequence similarity to the NAD binding domain of 6-phosphogluconate dehydrogenase above trusted (pfam03446).
Probab=96.39 E-value=0.015 Score=53.58 Aligned_cols=61 Identities=18% Similarity=0.294 Sum_probs=44.1
Q ss_pred EEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchhHHhhhhcccCCceEEEEecCCCHHhhhCCCCEEEEcCC
Q 022947 51 VLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAG 123 (289)
Q Consensus 51 IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~eal~~aDiVIitag 123 (289)
|||. |.+|..++..|+..|+ +|.++|+++.. ..++.... .. .+.++.++++++|+||++..
T Consensus 1 ~IGl-G~mG~~mA~~L~~~G~--~V~v~dr~~~~--~~~l~~~g----~~---~~~s~~~~~~~advVil~vp 61 (288)
T TIGR01692 1 FIGL-GNMGGPMAANLLKAGH--PVRVFDLFPDA--VEEAVAAG----AQ---AAASPAEAAEGADRVITMLP 61 (288)
T ss_pred CCcc-cHhHHHHHHHHHhCCC--eEEEEeCCHHH--HHHHHHcC----Ce---ecCCHHHHHhcCCEEEEeCC
Confidence 5798 9999999999999998 89999987622 22222211 11 12356788999999999863
No 408
>PRK08017 oxidoreductase; Provisional
Probab=96.38 E-value=0.048 Score=48.23 Aligned_cols=34 Identities=21% Similarity=0.146 Sum_probs=30.5
Q ss_pred CEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCC
Q 022947 47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN 82 (289)
Q Consensus 47 ~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~ 82 (289)
++|.|+||+|.+|..++..|+..|. +|++++++.
T Consensus 3 k~vlVtGasg~IG~~la~~l~~~g~--~v~~~~r~~ 36 (256)
T PRK08017 3 KSVLITGCSSGIGLEAALELKRRGY--RVLAACRKP 36 (256)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCC--EEEEEeCCH
Confidence 4799999999999999999999887 889998865
No 409
>PRK08040 putative semialdehyde dehydrogenase; Provisional
Probab=96.37 E-value=0.0091 Score=56.53 Aligned_cols=72 Identities=24% Similarity=0.287 Sum_probs=46.7
Q ss_pred CCCEEEEEcCCCccHHHHHHHHHhCC-CccEEEEEeCCCchhHHhhhhcccCCceEEEEecCCCHHhhhCCCCEEEEcCC
Q 022947 45 PGFKVAVLGAAGGIGQPLAMLMKINP-LVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAG 123 (289)
Q Consensus 45 ~~~KI~IIGaaG~VGs~la~~L~~~g-~~~eI~LvD~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~eal~~aDiVIitag 123 (289)
+.+||+|+||+|++|..+...|..+. ...+|.++-.....|+...+... .+.... . + +.++.++|+||++++
T Consensus 3 ~~~~vaIvGATG~vG~ellrlL~~~~hP~~~l~~laS~~saG~~~~~~~~----~~~v~~-~-~-~~~~~~~Dvvf~a~p 75 (336)
T PRK08040 3 EGWNIALLGATGAVGEALLELLAERQFPVGELYALASEESAGETLRFGGK----SVTVQD-A-A-EFDWSQAQLAFFVAG 75 (336)
T ss_pred CCCEEEEEccCCHHHHHHHHHHhcCCCCceEEEEEEccCcCCceEEECCc----ceEEEe-C-c-hhhccCCCEEEECCC
Confidence 45799999999999999999888742 23488888554434443332211 223211 1 2 244589999999864
No 410
>TIGR00465 ilvC ketol-acid reductoisomerase. This is the second enzyme in the parallel isoleucine-valine biosynthetic pathway
Probab=96.37 E-value=0.025 Score=53.03 Aligned_cols=65 Identities=17% Similarity=0.199 Sum_probs=43.4
Q ss_pred CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchhHHhhhhcccCCceEEEEecCCCHHhhhCCCCEEEEcC
Q 022947 46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPA 122 (289)
Q Consensus 46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~eal~~aDiVIita 122 (289)
.+||+|||+ |.+|.+++..|...|+ +++..+....... ..+.... +.. . +..+++++||+|+++.
T Consensus 3 ~kkIgiIG~-G~mG~AiA~~L~~sG~--~Viv~~~~~~~~~-~~a~~~G----v~~---~-s~~ea~~~ADiVvLaV 67 (314)
T TIGR00465 3 GKTVAIIGY-GSQGHAQALNLRDSGL--NVIVGLRKGGASW-KKATEDG----FKV---G-TVEEAIPQADLIMNLL 67 (314)
T ss_pred cCEEEEEeE-cHHHHHHHHHHHHCCC--eEEEEECcChhhH-HHHHHCC----CEE---C-CHHHHHhcCCEEEEeC
Confidence 468999998 9999999999999887 6666554331111 1111111 111 1 3567899999999985
No 411
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=96.35 E-value=0.039 Score=45.23 Aligned_cols=33 Identities=24% Similarity=0.498 Sum_probs=29.9
Q ss_pred EEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCC
Q 022947 48 KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN 82 (289)
Q Consensus 48 KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~ 82 (289)
||.|+|+ |.+|+.++..|+..|. .++.++|.+.
T Consensus 1 ~VliiG~-GglGs~ia~~L~~~Gv-~~i~ivD~d~ 33 (143)
T cd01483 1 RVLLVGL-GGLGSEIALNLARSGV-GKITLIDFDT 33 (143)
T ss_pred CEEEECC-CHHHHHHHHHHHHCCC-CEEEEEcCCC
Confidence 6899998 9999999999999996 6899999874
No 412
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=96.33 E-value=0.018 Score=53.44 Aligned_cols=67 Identities=19% Similarity=0.185 Sum_probs=47.6
Q ss_pred CCCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCc-hhHHhhhhcccCCceEEEEecCCCHHhhhCCCCEEEEcC
Q 022947 45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT-PGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPA 122 (289)
Q Consensus 45 ~~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~-~g~~~DL~~~~~~~~v~~~~~t~d~~eal~~aDiVIita 122 (289)
...||.|+|+ |.+|..++..|...|. +|..+|++.. ...+.++ . .... ...++.+.++++|+||.|.
T Consensus 151 ~g~kvlViG~-G~iG~~~a~~L~~~Ga--~V~v~~r~~~~~~~~~~~---G--~~~~---~~~~l~~~l~~aDiVI~t~ 218 (296)
T PRK08306 151 HGSNVLVLGF-GRTGMTLARTLKALGA--NVTVGARKSAHLARITEM---G--LSPF---HLSELAEEVGKIDIIFNTI 218 (296)
T ss_pred CCCEEEEECC-cHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHc---C--Ceee---cHHHHHHHhCCCCEEEECC
Confidence 3569999998 9999999999988886 9999998752 2222211 1 1111 1135667889999999985
No 413
>TIGR01831 fabG_rel 3-oxoacyl-(acyl-carrier-protein) reductase, putative. This model represents a small, very well conserved family of proteins closely related to the FabG family, TIGR01830, and possibly equal in function. In all completed genomes with a member of this family, a FabG in TIGR01830 is also found.
Probab=96.32 E-value=0.05 Score=47.66 Aligned_cols=114 Identities=15% Similarity=0.154 Sum_probs=62.2
Q ss_pred EEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCC-c--hhHHhhhhcccCCceEEEEe-cCCC---HHhh-------hCC
Q 022947 49 VAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-T--PGVTADISHMDTNAVVRGFL-GQQQ---LEDA-------LTG 114 (289)
Q Consensus 49 I~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~-~--~g~~~DL~~~~~~~~v~~~~-~t~d---~~ea-------l~~ 114 (289)
|.|+||+|.+|..++..|++.|. ++++++... . .....++.+.. .++..+. +-++ .++. +..
T Consensus 1 vlItGas~giG~~~a~~l~~~G~--~v~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~ 76 (239)
T TIGR01831 1 VLVTGASRGIGRAIANRLAADGF--EICVHYHSGRSDAESVVSAIQAQG--GNARLLQFDVADRVACRTLLEADIAEHGA 76 (239)
T ss_pred CEEeCCCchHHHHHHHHHHHCCC--EEEEEeCCCHHHHHHHHHHHHHcC--CeEEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence 46999999999999999999997 788887643 1 11122232211 1222211 1111 1122 235
Q ss_pred CCEEEEcCCCCCCCC---Cc---hhhHHHhhHHHHHHHHHHH----HHhCCCcEEEEecCCC
Q 022947 115 MDIVIIPAGVPRKPG---MT---RDDLFNINAGIVKTLCEGI----AKCCPKAIVNLISNPV 166 (289)
Q Consensus 115 aDiVIitag~~~~~g---~~---r~d~~~~N~~i~~~i~~~i----~~~~p~aiviv~tNPv 166 (289)
.|.+|.++|...... .+ -...+..|+.....+.+.+ .+..+.+.++++|.+.
T Consensus 77 i~~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~iv~vsS~~ 138 (239)
T TIGR01831 77 YYGVVLNAGITRDAAFPALSEEDWDIVIHTNLDGFYNVIHPCTMPMIRARQGGRIITLASVS 138 (239)
T ss_pred CCEEEECCCCCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhhcCCeEEEEEcchh
Confidence 689999988643221 11 2335566665544444432 2223456666666544
No 414
>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph
Probab=96.32 E-value=0.021 Score=50.96 Aligned_cols=98 Identities=23% Similarity=0.336 Sum_probs=62.3
Q ss_pred CCEEEEEcCCCccHHHHHHHHHhCCCcc--EEEEEeCCC----chh-----HHhhhhcccCCceEEEEecCCCHHhhhCC
Q 022947 46 GFKVAVLGAAGGIGQPLAMLMKINPLVS--VLHLYDVVN----TPG-----VTADISHMDTNAVVRGFLGQQQLEDALTG 114 (289)
Q Consensus 46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~--eI~LvD~~~----~~g-----~~~DL~~~~~~~~v~~~~~t~d~~eal~~ 114 (289)
.+||.|+|| |..|..++..|...|. . +|+++|++. .+. ...++.+...... . ..++.+++++
T Consensus 25 ~~rvlvlGA-GgAg~aiA~~L~~~G~-~~~~i~ivdr~gl~~~~r~~~L~~~~~~la~~~~~~~---~--~~~l~~~l~~ 97 (226)
T cd05311 25 EVKIVINGA-GAAGIAIARLLLAAGA-KPENIVVVDSKGVIYEGREDDLNPDKNEIAKETNPEK---T--GGTLKEALKG 97 (226)
T ss_pred CCEEEEECc-hHHHHHHHHHHHHcCc-CcceEEEEeCCCccccccchhhhHHHHHHHHHhccCc---c--cCCHHHHHhc
Confidence 459999999 9999999999988875 4 899999983 111 1122222110001 1 1256688999
Q ss_pred CCEEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecCCCcc
Q 022947 115 MDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNS 168 (289)
Q Consensus 115 aDiVIitag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~aiviv~tNPvd~ 168 (289)
+|++|-+.+ +|+ + + .+..+.| ++..+++..+||...
T Consensus 98 ~dvlIgaT~----~G~-----~--~----~~~l~~m---~~~~ivf~lsnP~~e 133 (226)
T cd05311 98 ADVFIGVSR----PGV-----V--K----KEMIKKM---AKDPIVFALANPVPE 133 (226)
T ss_pred CCEEEeCCC----CCC-----C--C----HHHHHhh---CCCCEEEEeCCCCCc
Confidence 999998864 233 1 1 2333333 367788888999753
No 415
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=96.31 E-value=0.011 Score=50.63 Aligned_cols=93 Identities=29% Similarity=0.391 Sum_probs=58.9
Q ss_pred CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchhHHhhhhcccCCceEEEEecCCCHHhhhCCCCEEEEcCCC-
Q 022947 46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGV- 124 (289)
Q Consensus 46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~eal~~aDiVIitag~- 124 (289)
.++|+|+|. |.+|+.+|..+..-|. +|+.+|+...... ...+. .+. ..++++.++.||+|+++...
T Consensus 36 g~tvgIiG~-G~IG~~vA~~l~~fG~--~V~~~d~~~~~~~--~~~~~----~~~----~~~l~ell~~aDiv~~~~plt 102 (178)
T PF02826_consen 36 GKTVGIIGY-GRIGRAVARRLKAFGM--RVIGYDRSPKPEE--GADEF----GVE----YVSLDELLAQADIVSLHLPLT 102 (178)
T ss_dssp TSEEEEEST-SHHHHHHHHHHHHTT---EEEEEESSCHHHH--HHHHT----TEE----ESSHHHHHHH-SEEEE-SSSS
T ss_pred CCEEEEEEE-cCCcCeEeeeeecCCc--eeEEecccCChhh--hcccc----cce----eeehhhhcchhhhhhhhhccc
Confidence 459999998 9999999999998887 9999998763221 01111 111 13678899999999998632
Q ss_pred CCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecCC
Q 022947 125 PRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNP 165 (289)
Q Consensus 125 ~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~aiviv~tNP 165 (289)
+...+. -|. +.+++..|.+++|+++--
T Consensus 103 ~~T~~l-------i~~-------~~l~~mk~ga~lvN~aRG 129 (178)
T PF02826_consen 103 PETRGL-------INA-------EFLAKMKPGAVLVNVARG 129 (178)
T ss_dssp TTTTTS-------BSH-------HHHHTSTTTEEEEESSSG
T ss_pred ccccee-------eee-------eeeeccccceEEEeccch
Confidence 211121 121 223445578899998643
No 416
>COG0002 ArgC Acetylglutamate semialdehyde dehydrogenase [Amino acid transport and metabolism]
Probab=96.30 E-value=0.01 Score=55.99 Aligned_cols=75 Identities=24% Similarity=0.208 Sum_probs=46.8
Q ss_pred CCCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchhHHhhhhcccC--CceEEEEecCCCHHh-hhCCCCEEEEc
Q 022947 45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDT--NAVVRGFLGQQQLED-ALTGMDIVIIP 121 (289)
Q Consensus 45 ~~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g~~~DL~~~~~--~~~v~~~~~t~d~~e-al~~aDiVIit 121 (289)
+++||+|+||+|+.|.-+..+|...+.. |+.++...+..|+...-.+... ...+... +.|.++ ...+||+||++
T Consensus 1 ~~~kV~IvGasGYtG~EL~rlL~~Hp~v-e~~~~ss~~~~g~~~~~~~p~l~g~~~l~~~--~~~~~~~~~~~~DvvFla 77 (349)
T COG0002 1 MMIKVGIVGASGYTGLELLRLLAGHPDV-ELILISSRERAGKPVSDVHPNLRGLVDLPFQ--TIDPEKIELDECDVVFLA 77 (349)
T ss_pred CCceEEEEcCCCCcHHHHHHHHhcCCCe-EEEEeechhhcCCchHHhCcccccccccccc--cCChhhhhcccCCEEEEe
Confidence 3679999999999999999999888754 6888876553444332222211 1112221 112222 24569999998
Q ss_pred C
Q 022947 122 A 122 (289)
Q Consensus 122 a 122 (289)
-
T Consensus 78 l 78 (349)
T COG0002 78 L 78 (349)
T ss_pred c
Confidence 3
No 417
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=96.29 E-value=0.038 Score=56.33 Aligned_cols=138 Identities=14% Similarity=0.194 Sum_probs=81.7
Q ss_pred CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchhHHhhhhcccCCceEEEEecCCCH---H-hhhCCCCEEEEc
Q 022947 46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQL---E-DALTGMDIVIIP 121 (289)
Q Consensus 46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g~~~DL~~~~~~~~v~~~~~t~d~---~-eal~~aDiVIit 121 (289)
.++|.|+|. |.+|+.++..|...++ +++++|.|+.. +..+.+.. .+-+.+ +.++. + ..+++||.+|++
T Consensus 400 ~~~vII~G~-Gr~G~~va~~L~~~g~--~vvvID~d~~~--v~~~~~~g-~~v~~G--Dat~~~~L~~agi~~A~~vv~~ 471 (601)
T PRK03659 400 KPQVIIVGF-GRFGQVIGRLLMANKM--RITVLERDISA--VNLMRKYG-YKVYYG--DATQLELLRAAGAEKAEAIVIT 471 (601)
T ss_pred cCCEEEecC-chHHHHHHHHHHhCCC--CEEEEECCHHH--HHHHHhCC-CeEEEe--eCCCHHHHHhcCCccCCEEEEE
Confidence 458999998 9999999999998888 89999998732 12222221 111111 11221 1 235799999998
Q ss_pred CCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEe-cCCCcccHHHHHHHHHHhCCCCCCcEEEeeeccHHHHH
Q 022947 122 AGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLI-SNPVNSTVPIAAEVFKKVGTYDPKRLLGVTMLDVVRAN 200 (289)
Q Consensus 122 ag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~aiviv~-tNPvd~~t~~~~~~~~~~~~~~~~kviG~t~lds~R~~ 200 (289)
.+.. ..| ..++..+++..|+..++.- .||.+. +.+++. | .+.|+=-+..-+.++-
T Consensus 472 ~~d~-----------~~n----~~i~~~~r~~~p~~~IiaRa~~~~~~------~~L~~~-G--a~~vv~e~~es~l~l~ 527 (601)
T PRK03659 472 CNEP-----------EDT----MKIVELCQQHFPHLHILARARGRVEA------HELLQA-G--VTQFSRETFSSALELG 527 (601)
T ss_pred eCCH-----------HHH----HHHHHHHHHHCCCCeEEEEeCCHHHH------HHHHhC-C--CCEEEccHHHHHHHHH
Confidence 4311 223 3356667788898776654 455433 233433 2 3455443433344444
Q ss_pred HHHHHHcCCCCccee
Q 022947 201 TFVAEVLGLDPREVD 215 (289)
Q Consensus 201 ~~lA~~l~v~~~~V~ 215 (289)
...=..+|+++++++
T Consensus 528 ~~~L~~lg~~~~~~~ 542 (601)
T PRK03659 528 RKTLVSLGMHPHQAQ 542 (601)
T ss_pred HHHHHHcCCCHHHHH
Confidence 455566788887774
No 418
>PRK06505 enoyl-(acyl carrier protein) reductase; Provisional
Probab=96.28 E-value=0.22 Score=45.15 Aligned_cols=35 Identities=17% Similarity=0.134 Sum_probs=29.7
Q ss_pred CCEEEEEcCCC--ccHHHHHHHHHhCCCccEEEEEeCCC
Q 022947 46 GFKVAVLGAAG--GIGQPLAMLMKINPLVSVLHLYDVVN 82 (289)
Q Consensus 46 ~~KI~IIGaaG--~VGs~la~~L~~~g~~~eI~LvD~~~ 82 (289)
.+.+.|+||++ -+|..++..|+..|. .|++.++++
T Consensus 7 ~k~~lVTGas~~~GIG~aiA~~la~~Ga--~V~~~~r~~ 43 (271)
T PRK06505 7 GKRGLIMGVANDHSIAWGIAKQLAAQGA--ELAFTYQGE 43 (271)
T ss_pred CCEEEEeCCCCCCcHHHHHHHHHHhCCC--EEEEecCch
Confidence 35788999964 799999999999997 899998765
No 419
>PRK06728 aspartate-semialdehyde dehydrogenase; Provisional
Probab=96.27 E-value=0.011 Score=56.31 Aligned_cols=71 Identities=25% Similarity=0.482 Sum_probs=47.5
Q ss_pred CCEEEEEcCCCccHHHHHHHHHhCC-C-ccEEEEEeCCCchhHHhhhhcccCCceEEEEecCCCHHhhhCCCCEEEEcCC
Q 022947 46 GFKVAVLGAAGGIGQPLAMLMKINP-L-VSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAG 123 (289)
Q Consensus 46 ~~KI~IIGaaG~VGs~la~~L~~~g-~-~~eI~LvD~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~eal~~aDiVIitag 123 (289)
.+||+|+||+|+||..+...|...+ + ..+|.++......|+...+.. ..+.... .+. +.++++|+||++++
T Consensus 5 ~~~VaIvGATG~vG~ell~lL~~h~~f~v~~l~~~aS~~saGk~~~~~~----~~l~v~~--~~~-~~~~~~Divf~a~~ 77 (347)
T PRK06728 5 GYHVAVVGATGAVGQKIIELLEKETKFNIAEVTLLSSKRSAGKTVQFKG----REIIIQE--AKI-NSFEGVDIAFFSAG 77 (347)
T ss_pred CCEEEEEeCCCHHHHHHHHHHHHCCCCCcccEEEEECcccCCCCeeeCC----cceEEEe--CCH-HHhcCCCEEEECCC
Confidence 4699999999999999999888544 3 345888876554444443322 1233221 233 56799999999865
No 420
>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=96.24 E-value=0.016 Score=53.98 Aligned_cols=56 Identities=21% Similarity=0.353 Sum_probs=46.1
Q ss_pred CCCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchhHHhhhhcccCCceEEEEecCCCHHhhhCCCCEEEEcCCC
Q 022947 45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGV 124 (289)
Q Consensus 45 ~~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~eal~~aDiVIitag~ 124 (289)
..++|+|||.+|.||..++..|...|. .|.+++... .++++.++.||+||.+.|.
T Consensus 158 ~Gk~V~vIG~s~ivG~PmA~~L~~~ga--tVtv~~~~t-----------------------~~l~e~~~~ADIVIsavg~ 212 (301)
T PRK14194 158 TGKHAVVIGRSNIVGKPMAALLLQAHC--SVTVVHSRS-----------------------TDAKALCRQADIVVAAVGR 212 (301)
T ss_pred CCCEEEEECCCCccHHHHHHHHHHCCC--EEEEECCCC-----------------------CCHHHHHhcCCEEEEecCC
Confidence 367999999966999999999999987 888885421 2466889999999999886
Q ss_pred C
Q 022947 125 P 125 (289)
Q Consensus 125 ~ 125 (289)
+
T Consensus 213 ~ 213 (301)
T PRK14194 213 P 213 (301)
T ss_pred h
Confidence 5
No 421
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=96.22 E-value=0.034 Score=52.75 Aligned_cols=35 Identities=20% Similarity=0.283 Sum_probs=31.4
Q ss_pred CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCC
Q 022947 46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN 82 (289)
Q Consensus 46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~ 82 (289)
..||.|+|+ |.+|+.++..|+..|+ .+|.++|.+.
T Consensus 24 ~~~VlVvG~-GglGs~va~~La~aGv-g~i~lvD~D~ 58 (339)
T PRK07688 24 EKHVLIIGA-GALGTANAEMLVRAGV-GKVTIVDRDY 58 (339)
T ss_pred CCcEEEECC-CHHHHHHHHHHHHcCC-CeEEEEeCCc
Confidence 458999999 9999999999999996 6999999874
No 422
>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=96.22 E-value=0.019 Score=57.58 Aligned_cols=93 Identities=25% Similarity=0.329 Sum_probs=60.0
Q ss_pred CCCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchhHHhhhhcccCCceEEEEecCCCHHhhhCCCCEEEEcCCC
Q 022947 45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGV 124 (289)
Q Consensus 45 ~~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~eal~~aDiVIitag~ 124 (289)
..++|+|+|. |.+|+.+|..+...|. +|+.+|.........++ .+.. . ++++.++.||+|+++...
T Consensus 139 ~gktvgIiG~-G~IG~~vA~~l~~fG~--~V~~~d~~~~~~~~~~~-------g~~~---~-~l~ell~~aDiV~l~lP~ 204 (526)
T PRK13581 139 YGKTLGIIGL-GRIGSEVAKRAKAFGM--KVIAYDPYISPERAAQL-------GVEL---V-SLDELLARADFITLHTPL 204 (526)
T ss_pred CCCEEEEECC-CHHHHHHHHHHHhCCC--EEEEECCCCChhHHHhc-------CCEE---E-cHHHHHhhCCEEEEccCC
Confidence 3568999998 9999999999988887 99999975422121111 1111 1 467889999999998532
Q ss_pred CCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecC
Q 022947 125 PRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISN 164 (289)
Q Consensus 125 ~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~aiviv~tN 164 (289)
. + +++. ++ | .+.+....|.+++++++-
T Consensus 205 t--~-~t~~-li--~-------~~~l~~mk~ga~lIN~aR 231 (526)
T PRK13581 205 T--P-ETRG-LI--G-------AEELAKMKPGVRIINCAR 231 (526)
T ss_pred C--h-Hhhc-Cc--C-------HHHHhcCCCCeEEEECCC
Confidence 2 1 1111 11 2 133444458889988863
No 423
>PRK06125 short chain dehydrogenase; Provisional
Probab=96.20 E-value=0.18 Score=44.87 Aligned_cols=115 Identities=17% Similarity=0.152 Sum_probs=64.1
Q ss_pred CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCc--hhHHhhhhcccCCceEEEEe-cCCCH---H---hhhCCCC
Q 022947 46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTNAVVRGFL-GQQQL---E---DALTGMD 116 (289)
Q Consensus 46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~--~g~~~DL~~~~~~~~v~~~~-~t~d~---~---eal~~aD 116 (289)
.+++.|+|++|.+|..++..|+..|. +|+++|+++. .....++.... ..++..+. +-++. . +.+...|
T Consensus 7 ~k~vlItG~~~giG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~l~~~~-~~~~~~~~~D~~~~~~~~~~~~~~g~id 83 (259)
T PRK06125 7 GKRVLITGASKGIGAAAAEAFAAEGC--HLHLVARDADALEALAADLRAAH-GVDVAVHALDLSSPEAREQLAAEAGDID 83 (259)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHcCC--EEEEEeCCHHHHHHHHHHHHhhc-CCceEEEEecCCCHHHHHHHHHHhCCCC
Confidence 35899999999999999999999987 8999998762 11122232211 11121111 11121 1 2246799
Q ss_pred EEEEcCCCCCC-C--CCch---hhHHHhhHHH----HHHHHHHHHHhCCCcEEEEecC
Q 022947 117 IVIIPAGVPRK-P--GMTR---DDLFNINAGI----VKTLCEGIAKCCPKAIVNLISN 164 (289)
Q Consensus 117 iVIitag~~~~-~--g~~r---~d~~~~N~~i----~~~i~~~i~~~~p~aiviv~tN 164 (289)
++|.++|.... + ..+. ...+..|+.. .+.+.+.+.+.. .+.++++|.
T Consensus 84 ~lv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~-~g~iv~iss 140 (259)
T PRK06125 84 ILVNNAGAIPGGGLDDVDDAAWRAGWELKVFGYIDLTRLAYPRMKARG-SGVIVNVIG 140 (259)
T ss_pred EEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcC-CcEEEEecC
Confidence 99999986421 1 1111 2234556553 444444554432 345555543
No 424
>cd01079 NAD_bind_m-THF_DH NAD binding domain of methylene-tetrahydrofolate dehydrogenase. The NAD-binding domain of methylene-tetrahydrofolate dehydrogenase (m-THF DH). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. M-THF DH is a component of an unusual monofunctional enzyme; in eukaryotes, m-THF DH is typically found as part of a multifunctional protein. NADP-dependent m-THF DHs in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofunctional DH, as well as bifunctional DH/cyclodrolase are found. In addition, yeast (S. cerevisiae) also express an monofunctional DH. This family contains only the monofunctional
Probab=96.19 E-value=0.02 Score=49.99 Aligned_cols=75 Identities=21% Similarity=0.259 Sum_probs=50.4
Q ss_pred CCCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCc--hhHHhhhhcccCCceEEEEecCCCHHhhhCCCCEEEEcC
Q 022947 45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPA 122 (289)
Q Consensus 45 ~~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~--~g~~~DL~~~~~~~~v~~~~~t~d~~eal~~aDiVIita 122 (289)
..++|+|||-|.-||..++.+|+.++- .|.++|++.- ......+.|... .... -+.++.+.++.||+||.++
T Consensus 61 ~GK~vvVIGrS~iVGkPla~lL~~~~A--tVti~~~~~~~~~~~~~~~~hs~t--~~~~--~~~~l~~~~~~ADIVIsAv 134 (197)
T cd01079 61 YGKTITIINRSEVVGRPLAALLANDGA--RVYSVDINGIQVFTRGESIRHEKH--HVTD--EEAMTLDCLSQSDVVITGV 134 (197)
T ss_pred CCCEEEEECCCccchHHHHHHHHHCCC--EEEEEecCcccccccccccccccc--cccc--hhhHHHHHhhhCCEEEEcc
Confidence 356999999999999999999998885 8999988651 111111122211 0000 0112567889999999999
Q ss_pred CCC
Q 022947 123 GVP 125 (289)
Q Consensus 123 g~~ 125 (289)
|.+
T Consensus 135 G~~ 137 (197)
T cd01079 135 PSP 137 (197)
T ss_pred CCC
Confidence 866
No 425
>PTZ00075 Adenosylhomocysteinase; Provisional
Probab=96.18 E-value=0.024 Score=55.94 Aligned_cols=90 Identities=23% Similarity=0.223 Sum_probs=60.9
Q ss_pred CCCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchh-HHhhhhcccCCceEEEEecCCCHHhhhCCCCEEEEcCC
Q 022947 45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPG-VTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAG 123 (289)
Q Consensus 45 ~~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g-~~~DL~~~~~~~~v~~~~~t~d~~eal~~aDiVIitag 123 (289)
..++|+|+|. |.||..+|..+...|. +|+.+|+++... .+.. +. ..+ .+++++++.+|+||.+.|
T Consensus 253 aGKtVgVIG~-G~IGr~vA~rL~a~Ga--~ViV~e~dp~~a~~A~~--~G---~~~------~~leell~~ADIVI~atG 318 (476)
T PTZ00075 253 AGKTVVVCGY-GDVGKGCAQALRGFGA--RVVVTEIDPICALQAAM--EG---YQV------VTLEDVVETADIFVTATG 318 (476)
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHCCC--EEEEEeCCchhHHHHHh--cC---cee------ccHHHHHhcCCEEEECCC
Confidence 3568999998 9999999999988887 899998876322 1111 11 111 146788999999999865
Q ss_pred CCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecCC
Q 022947 124 VPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNP 165 (289)
Q Consensus 124 ~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~aiviv~tNP 165 (289)
.+ .++. .+.+....|.+++++++-.
T Consensus 319 t~---------------~iI~--~e~~~~MKpGAiLINvGr~ 343 (476)
T PTZ00075 319 NK---------------DIIT--LEHMRRMKNNAIVGNIGHF 343 (476)
T ss_pred cc---------------cccC--HHHHhccCCCcEEEEcCCC
Confidence 32 1111 1234445688999998755
No 426
>PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF). Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the NAD(P)-binding domain found in these enzymes.; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1B0A_A 2C2X_B 2C2Y_A 3NGL_C 3NGX_A 4A26_B 1EDZ_A 1EE9_A 3P2O_B 1DIA_A ....
Probab=96.17 E-value=0.029 Score=47.58 Aligned_cols=55 Identities=31% Similarity=0.498 Sum_probs=40.6
Q ss_pred CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchhHHhhhhcccCCceEEEEecCCCHHhhhCCCCEEEEcCCCC
Q 022947 46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVP 125 (289)
Q Consensus 46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~eal~~aDiVIitag~~ 125 (289)
.++|+|||.++.||..++.+|..++- .|.+.+.+ |.++++.++.||+||.++|.|
T Consensus 36 Gk~v~VvGrs~~VG~Pla~lL~~~~a--tVt~~h~~-----------------------T~~l~~~~~~ADIVVsa~G~~ 90 (160)
T PF02882_consen 36 GKKVVVVGRSNIVGKPLAMLLLNKGA--TVTICHSK-----------------------TKNLQEITRRADIVVSAVGKP 90 (160)
T ss_dssp T-EEEEE-TTTTTHHHHHHHHHHTT---EEEEE-TT-----------------------SSSHHHHHTTSSEEEE-SSST
T ss_pred CCEEEEECCcCCCChHHHHHHHhCCC--eEEeccCC-----------------------CCcccceeeeccEEeeeeccc
Confidence 45999999988999999999998875 55555321 235678899999999999866
No 427
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=96.17 E-value=0.047 Score=55.91 Aligned_cols=139 Identities=17% Similarity=0.215 Sum_probs=82.3
Q ss_pred CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchhHHhhhhcccCCceEEEEecCCCH---H-hhhCCCCEEEEc
Q 022947 46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQL---E-DALTGMDIVIIP 121 (289)
Q Consensus 46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g~~~DL~~~~~~~~v~~~~~t~d~---~-eal~~aDiVIit 121 (289)
.++|.|+|. |.+|+.++..|...+. +++++|.|+.+ +..+.... .++- +.+.++. + ..+.+||.+|++
T Consensus 400 ~~~vII~G~-Gr~G~~va~~L~~~g~--~vvvID~d~~~--v~~~~~~g--~~v~-~GDat~~~~L~~agi~~A~~vvv~ 471 (621)
T PRK03562 400 QPRVIIAGF-GRFGQIVGRLLLSSGV--KMTVLDHDPDH--IETLRKFG--MKVF-YGDATRMDLLESAGAAKAEVLINA 471 (621)
T ss_pred cCcEEEEec-ChHHHHHHHHHHhCCC--CEEEEECCHHH--HHHHHhcC--CeEE-EEeCCCHHHHHhcCCCcCCEEEEE
Confidence 358999999 9999999999998887 89999998732 12222211 1221 1112222 1 235799999988
Q ss_pred CCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecCCCcccHHHHHHHHHHhCCCCCCcEEEeeeccHHHHHH
Q 022947 122 AGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGVTMLDVVRANT 201 (289)
Q Consensus 122 ag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~aiviv~tNPvd~~t~~~~~~~~~~~~~~~~kviG~t~lds~R~~~ 201 (289)
...+ +.| ..++..+++..|+..+++-++-..-. +.+++. | -+.++--+...+.++-+
T Consensus 472 ~~d~-----------~~n----~~i~~~ar~~~p~~~iiaRa~d~~~~-----~~L~~~-G--ad~v~~e~~e~sl~l~~ 528 (621)
T PRK03562 472 IDDP-----------QTS----LQLVELVKEHFPHLQIIARARDVDHY-----IRLRQA-G--VEKPERETFEGALKSGR 528 (621)
T ss_pred eCCH-----------HHH----HHHHHHHHHhCCCCeEEEEECCHHHH-----HHHHHC-C--CCEEehhhHhHHHHHHH
Confidence 4211 234 34555667778987766544332221 223332 3 34454445444556666
Q ss_pred HHHHHcCCCCccee
Q 022947 202 FVAEVLGLDPREVD 215 (289)
Q Consensus 202 ~lA~~l~v~~~~V~ 215 (289)
.+-+.+|+++++++
T Consensus 529 ~~L~~lg~~~~~~~ 542 (621)
T PRK03562 529 LVLESLGLGPYEAR 542 (621)
T ss_pred HHHHHcCCCHHHHH
Confidence 66677888876664
No 428
>PRK07201 short chain dehydrogenase; Provisional
Probab=96.16 E-value=0.058 Score=54.87 Aligned_cols=115 Identities=16% Similarity=0.159 Sum_probs=65.0
Q ss_pred CCCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCc--hhHHhhhhcccCCceEEEE----ecCCCHHhhh------
Q 022947 45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTNAVVRGF----LGQQQLEDAL------ 112 (289)
Q Consensus 45 ~~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~--~g~~~DL~~~~~~~~v~~~----~~t~d~~eal------ 112 (289)
+.+++.|+||+|.+|..++..|+..|. +|+++++++. .....++.... .++..+ ....+.++++
T Consensus 370 ~~k~vlItGas~giG~~la~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dv~~~~~~~~~~~~~~~~ 445 (657)
T PRK07201 370 VGKVVLITGASSGIGRATAIKVAEAGA--TVFLVARNGEALDELVAEIRAKG--GTAHAYTCDLTDSAAVDHTVKDILAE 445 (657)
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhcC--CcEEEEEecCCCHHHHHHHHHHHHHh
Confidence 346899999999999999999999997 8999998762 11222222211 122211 1111222233
Q ss_pred -CCCCEEEEcCCCCCCCC----C----chhhHHHhhHHHHH----HHHHHHHHhCCCcEEEEecC
Q 022947 113 -TGMDIVIIPAGVPRKPG----M----TRDDLFNINAGIVK----TLCEGIAKCCPKAIVNLISN 164 (289)
Q Consensus 113 -~~aDiVIitag~~~~~g----~----~r~d~~~~N~~i~~----~i~~~i~~~~p~aiviv~tN 164 (289)
...|++|.+||...... . +-...+..|+.... .+.+.+++. ..+.|+++|.
T Consensus 446 ~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~-~~g~iv~isS 509 (657)
T PRK07201 446 HGHVDYLVNNAGRSIRRSVENSTDRFHDYERTMAVNYFGAVRLILGLLPHMRER-RFGHVVNVSS 509 (657)
T ss_pred cCCCCEEEECCCCCCCCChhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhc-CCCEEEEECC
Confidence 36899999998642211 0 11234556655444 444444433 3455666553
No 429
>PRK05599 hypothetical protein; Provisional
Probab=96.15 E-value=0.31 Score=43.26 Aligned_cols=116 Identities=11% Similarity=0.202 Sum_probs=63.5
Q ss_pred CEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCC--chhHHhhhhcccCCceEEEE----ecCCCH-------HhhhC
Q 022947 47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTNAVVRGF----LGQQQL-------EDALT 113 (289)
Q Consensus 47 ~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~--~~g~~~DL~~~~~~~~v~~~----~~t~d~-------~eal~ 113 (289)
|.+.|+||++.+|..++..|+ +|. .|++.++++ .+....++..... ..+..+ ....+. .+.+.
T Consensus 1 ~~vlItGas~GIG~aia~~l~-~g~--~Vil~~r~~~~~~~~~~~l~~~~~-~~~~~~~~Dv~d~~~v~~~~~~~~~~~g 76 (246)
T PRK05599 1 MSILILGGTSDIAGEIATLLC-HGE--DVVLAARRPEAAQGLASDLRQRGA-TSVHVLSFDAQDLDTHRELVKQTQELAG 76 (246)
T ss_pred CeEEEEeCccHHHHHHHHHHh-CCC--EEEEEeCCHHHHHHHHHHHHhccC-CceEEEEcccCCHHHHHHHHHHHHHhcC
Confidence 468899999999999999888 465 899999876 2222333432211 111111 111111 12235
Q ss_pred CCCEEEEcCCCCCCCC---Cch---hhHHHhhH----HHHHHHHHHHHHhCCCcEEEEecCCC
Q 022947 114 GMDIVIIPAGVPRKPG---MTR---DDLFNINA----GIVKTLCEGIAKCCPKAIVNLISNPV 166 (289)
Q Consensus 114 ~aDiVIitag~~~~~g---~~r---~d~~~~N~----~i~~~i~~~i~~~~p~aiviv~tNPv 166 (289)
..|++|+++|...... .+. .+....|. ...+.+.+.+.+...++.|+++|.-.
T Consensus 77 ~id~lv~nag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~~~~g~Iv~isS~~ 139 (246)
T PRK05599 77 EISLAVVAFGILGDQERAETDEAHAVEIATVDYTAQVSMLTVLADELRAQTAPAAIVAFSSIA 139 (246)
T ss_pred CCCEEEEecCcCCCchhhhcCcHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCCCEEEEEeccc
Confidence 7899999998743211 111 12233333 33345556665544457777776544
No 430
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=96.12 E-value=0.046 Score=53.20 Aligned_cols=90 Identities=22% Similarity=0.169 Sum_probs=60.5
Q ss_pred CCCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCch-hHHhhhhcccCCceEEEEecCCCHHhhhCCCCEEEEcCC
Q 022947 45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP-GVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAG 123 (289)
Q Consensus 45 ~~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~-g~~~DL~~~~~~~~v~~~~~t~d~~eal~~aDiVIitag 123 (289)
...+|+|+|+ |.+|..++..+...|. +|+.+|+++.+ ..+.++. ..+ .+.+++++++|+||.+.|
T Consensus 201 ~GktVvViG~-G~IG~~va~~ak~~Ga--~ViV~d~d~~R~~~A~~~G-----~~~------~~~~e~v~~aDVVI~atG 266 (413)
T cd00401 201 AGKVAVVAGY-GDVGKGCAQSLRGQGA--RVIVTEVDPICALQAAMEG-----YEV------MTMEEAVKEGDIFVTTTG 266 (413)
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHCCC--EEEEEECChhhHHHHHhcC-----CEE------ccHHHHHcCCCEEEECCC
Confidence 4569999999 9999999999988886 78889998732 2222211 111 123577899999999865
Q ss_pred CCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecCC
Q 022947 124 VPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNP 165 (289)
Q Consensus 124 ~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~aiviv~tNP 165 (289)
.+ ..+.. ..+....|.+++++++.+
T Consensus 267 ~~---------------~~i~~--~~l~~mk~GgilvnvG~~ 291 (413)
T cd00401 267 NK---------------DIITG--EHFEQMKDGAIVCNIGHF 291 (413)
T ss_pred CH---------------HHHHH--HHHhcCCCCcEEEEeCCC
Confidence 32 11221 113334578999999875
No 431
>COG0289 DapB Dihydrodipicolinate reductase [Amino acid transport and metabolism]
Probab=96.11 E-value=0.053 Score=49.44 Aligned_cols=75 Identities=20% Similarity=0.224 Sum_probs=43.5
Q ss_pred CCCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchhHHhhhhcccCCceEEEEecCCCHHhhhCCCCEEEE
Q 022947 45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVII 120 (289)
Q Consensus 45 ~~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~eal~~aDiVIi 120 (289)
+++||+|.|++|.+|+.+...+.+.+...=+..+|.......-.|.........+... .++|+.....++|++|=
T Consensus 1 ~~iki~V~Ga~GRMG~~ii~~v~~~~~~~L~aa~~~~~~~~~g~d~ge~~g~~~~gv~-v~~~~~~~~~~~DV~ID 75 (266)
T COG0289 1 SMIKVAVAGASGRMGRTLIRAVLEAPDLELVAAFDRPGSLSLGSDAGELAGLGLLGVP-VTDDLLLVKADADVLID 75 (266)
T ss_pred CCceEEEEcCCChHHHHHHHHHhcCCCceEEEEEecCCccccccchhhhccccccCce-eecchhhcccCCCEEEE
Confidence 3689999999999999999988887744344556665421111122221111111111 12344566788888775
No 432
>TIGR02371 ala_DH_arch alanine dehydrogenase, Archaeoglobus fulgidus type. This enzyme, a homolog of bacterial ornithine cyclodeaminases and marsupial mu-crystallins, is a homodimeric, NAD-dependent alanine dehydrogenase found in Archaeoglobus fulgidus and several other Archaea. For a number of close homologs, scoring between trusted and noise cutoffs, it is not clear at present what is the enzymatic activity.
Probab=96.11 E-value=0.023 Score=53.51 Aligned_cols=71 Identities=15% Similarity=0.180 Sum_probs=49.1
Q ss_pred CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCc--hhHHhhhhcccCCceEEEEecCCCHHhhhCCCCEEEEcC
Q 022947 46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPA 122 (289)
Q Consensus 46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~--~g~~~DL~~~~~~~~v~~~~~t~d~~eal~~aDiVIita 122 (289)
..+++|||+ |..|...+..+.......+|.++|++.. +..+.++.+. ...+.. ..+.++++++||+|+.+.
T Consensus 128 ~~~lgiiG~-G~qA~~~l~al~~~~~~~~v~V~~r~~~~~~~~~~~~~~~--g~~v~~---~~~~~eav~~aDiVitaT 200 (325)
T TIGR02371 128 SSVLGIIGA-GRQAWTQLEALSRVFDLEEVSVYCRTPSTREKFALRASDY--EVPVRA---ATDPREAVEGCDILVTTT 200 (325)
T ss_pred CCEEEEECC-CHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHhh--CCcEEE---eCCHHHHhccCCEEEEec
Confidence 468999998 9999987766655445689999999872 2333334321 122332 246789999999999874
No 433
>PRK08862 short chain dehydrogenase; Provisional
Probab=96.10 E-value=0.37 Score=42.56 Aligned_cols=115 Identities=13% Similarity=0.136 Sum_probs=64.2
Q ss_pred CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCc--hhHHhhhhcccCCceEEEE----ecCCCHH-------hhh
Q 022947 46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTNAVVRGF----LGQQQLE-------DAL 112 (289)
Q Consensus 46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~--~g~~~DL~~~~~~~~v~~~----~~t~d~~-------eal 112 (289)
.+.+.|+|+++-+|..++..|++.|. +|+++++++. +....++.... ..+..+ ....+++ +.+
T Consensus 5 ~k~~lVtGas~GIG~aia~~la~~G~--~V~~~~r~~~~l~~~~~~i~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~ 80 (227)
T PRK08862 5 SSIILITSAGSVLGRTISCHFARLGA--TLILCDQDQSALKDTYEQCSALT--DNVYSFQLKDFSQESIRHLFDAIEQQF 80 (227)
T ss_pred CeEEEEECCccHHHHHHHHHHHHCCC--EEEEEcCCHHHHHHHHHHHHhcC--CCeEEEEccCCCHHHHHHHHHHHHHHh
Confidence 35899999999999999999999997 8999988762 11222222211 111111 0111121 122
Q ss_pred C-CCCEEEEcCCCCCCC----CCchhh---HHHhhH----HHHHHHHHHHHHhCCCcEEEEecC
Q 022947 113 T-GMDIVIIPAGVPRKP----GMTRDD---LFNINA----GIVKTLCEGIAKCCPKAIVNLISN 164 (289)
Q Consensus 113 ~-~aDiVIitag~~~~~----g~~r~d---~~~~N~----~i~~~i~~~i~~~~p~aiviv~tN 164 (289)
. ..|++|.++|....+ ..+..+ .+..|. ...+...+.+.+....+.|+++|.
T Consensus 81 g~~iD~li~nag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~~~~g~Iv~isS 144 (227)
T PRK08862 81 NRAPDVLVNNWTSSPLPSLFDEQPSESFIQQLSSLASTLFTYGQVAAERMRKRNKKGVIVNVIS 144 (227)
T ss_pred CCCCCEEEECCccCCCCCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCceEEEEec
Confidence 3 689999999743221 112111 223343 334455566655444567777764
No 434
>PRK06603 enoyl-(acyl carrier protein) reductase; Provisional
Probab=96.09 E-value=0.39 Score=43.05 Aligned_cols=156 Identities=13% Similarity=0.130 Sum_probs=78.7
Q ss_pred CCEEEEEcCCC--ccHHHHHHHHHhCCCccEEEEEeCCC-chhHHhhhhcc-cCCceEE-EEecCCCH-------HhhhC
Q 022947 46 GFKVAVLGAAG--GIGQPLAMLMKINPLVSVLHLYDVVN-TPGVTADISHM-DTNAVVR-GFLGQQQL-------EDALT 113 (289)
Q Consensus 46 ~~KI~IIGaaG--~VGs~la~~L~~~g~~~eI~LvD~~~-~~g~~~DL~~~-~~~~~v~-~~~~t~d~-------~eal~ 113 (289)
.+.+.|+||++ -+|..++..|+..|. .|++.++++ ......++... .....+. ..+...+. .+.+.
T Consensus 8 ~k~~lITGas~~~GIG~a~a~~la~~G~--~v~~~~r~~~~~~~~~~l~~~~g~~~~~~~Dv~~~~~v~~~~~~~~~~~g 85 (260)
T PRK06603 8 GKKGLITGIANNMSISWAIAQLAKKHGA--ELWFTYQSEVLEKRVKPLAEEIGCNFVSELDVTNPKSISNLFDDIKEKWG 85 (260)
T ss_pred CcEEEEECCCCCcchHHHHHHHHHHcCC--EEEEEeCchHHHHHHHHHHHhcCCceEEEccCCCHHHHHHHHHHHHHHcC
Confidence 45788999965 599999999999997 888888764 11222333221 1000011 01111111 12245
Q ss_pred CCCEEEEcCCCCCC-----C--CCch---hhHHHhhHHHHHHHHHHHHHh-CCCcEEEEecCCCcccHHHHHHHHHHhCC
Q 022947 114 GMDIVIIPAGVPRK-----P--GMTR---DDLFNINAGIVKTLCEGIAKC-CPKAIVNLISNPVNSTVPIAAEVFKKVGT 182 (289)
Q Consensus 114 ~aDiVIitag~~~~-----~--g~~r---~d~~~~N~~i~~~i~~~i~~~-~p~aiviv~tNPvd~~t~~~~~~~~~~~~ 182 (289)
..|++|..+|.... + ..+. ...+..|+.....+.+.+... ...+.|++++...... +
T Consensus 86 ~iDilVnnag~~~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~~~~~~~~~m~~~G~Iv~isS~~~~~------------~ 153 (260)
T PRK06603 86 SFDFLLHGMAFADKNELKGRYVDTSLENFHNSLHISCYSLLELSRSAEALMHDGGSIVTLTYYGAEK------------V 153 (260)
T ss_pred CccEEEEccccCCcccccCccccCCHHHHHHHHHHHHHHHHHHHHHHHhhhccCceEEEEecCcccc------------C
Confidence 68999999886421 1 1111 223455554444444333222 1346777776533211 1
Q ss_pred CCCCcEEEeeeccHHHHHHHHHHHcCCCCcceeee
Q 022947 183 YDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVP 217 (289)
Q Consensus 183 ~~~~kviG~t~lds~R~~~~lA~~l~v~~~~V~~~ 217 (289)
.|..-.++.+..--..|-+.+|.+++ +..|++.
T Consensus 154 ~~~~~~Y~asKaal~~l~~~la~el~--~~gIrVn 186 (260)
T PRK06603 154 IPNYNVMGVAKAALEASVKYLANDMG--ENNIRVN 186 (260)
T ss_pred CCcccchhhHHHHHHHHHHHHHHHhh--hcCeEEE
Confidence 22223344443333445667777764 3445544
No 435
>COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]
Probab=96.07 E-value=0.027 Score=53.11 Aligned_cols=92 Identities=32% Similarity=0.399 Sum_probs=58.9
Q ss_pred CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchhHHhhhhcccCCceEEEEecCCCHHhhhCCCCEEEEcCCCC
Q 022947 46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVP 125 (289)
Q Consensus 46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~eal~~aDiVIitag~~ 125 (289)
.++|+|||. |.+|+.++..+..-|. +|..||......... .+ ... ...++++-++.||+|++.. |
T Consensus 142 gkTvGIiG~-G~IG~~va~~l~afgm--~v~~~d~~~~~~~~~--~~-----~~~---~~~~Ld~lL~~sDiv~lh~--P 206 (324)
T COG0111 142 GKTVGIIGL-GRIGRAVAKRLKAFGM--KVIGYDPYSPRERAG--VD-----GVV---GVDSLDELLAEADILTLHL--P 206 (324)
T ss_pred CCEEEEECC-CHHHHHHHHHHHhCCC--eEEEECCCCchhhhc--cc-----cce---ecccHHHHHhhCCEEEEcC--C
Confidence 569999998 9999999999999998 999999843211111 01 011 1235788899999999974 2
Q ss_pred CCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEec
Q 022947 126 RKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLIS 163 (289)
Q Consensus 126 ~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~aiviv~t 163 (289)
..+ ++|. .-|. +.+++..|.+++||++
T Consensus 207 lT~-eT~g---~i~~-------~~~a~MK~gailIN~a 233 (324)
T COG0111 207 LTP-ETRG---LINA-------EELAKMKPGAILINAA 233 (324)
T ss_pred CCc-chhc---ccCH-------HHHhhCCCCeEEEECC
Confidence 221 1221 0121 2233444788888875
No 436
>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=96.05 E-value=0.047 Score=53.60 Aligned_cols=128 Identities=16% Similarity=0.219 Sum_probs=73.3
Q ss_pred CCCCCCEEEEEcCCCccHHH-HHHHHHhCCCccEEEEEeCCCchhHHhhhhcccCCceEEEEecCCCHHhhhCCCCEEEE
Q 022947 42 GGSPGFKVAVLGAAGGIGQP-LAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVII 120 (289)
Q Consensus 42 ~~~~~~KI~IIGaaG~VGs~-la~~L~~~g~~~eI~LvD~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~eal~~aDiVIi 120 (289)
...+.+||.|+|. |..|.+ +|..|...|. +|...|.+... ...+|... .+..+.+ .+ .+.+.++|+||.
T Consensus 3 ~~~~~~~v~viG~-G~sG~s~~a~~L~~~G~--~V~~~D~~~~~-~~~~l~~~----gi~~~~~-~~-~~~~~~~d~vv~ 72 (461)
T PRK00421 3 ELRRIKRIHFVGI-GGIGMSGLAEVLLNLGY--KVSGSDLKESA-VTQRLLEL----GAIIFIG-HD-AENIKDADVVVY 72 (461)
T ss_pred CcCCCCEEEEEEE-chhhHHHHHHHHHhCCC--eEEEECCCCCh-HHHHHHHC----CCEEeCC-CC-HHHCCCCCEEEE
Confidence 3445678999999 999999 7989999998 99999987632 12233322 1222212 12 356889999999
Q ss_pred cCCCCCCCCCchhhHHHhhHHHHHH--HHHHHHHhCCCcEEEEecCCCc--ccHHHHHHHHHHhCCCC
Q 022947 121 PAGVPRKPGMTRDDLFNINAGIVKT--LCEGIAKCCPKAIVNLISNPVN--STVPIAAEVFKKVGTYD 184 (289)
Q Consensus 121 tag~~~~~g~~r~d~~~~N~~i~~~--i~~~i~~~~p~aiviv~tNPvd--~~t~~~~~~~~~~~~~~ 184 (289)
+.|+|...- ........+++++-+ ++..+ .++..+|-+|=... +.|.++.++++.. |++
T Consensus 73 spgi~~~~~-~~~~a~~~~i~i~~~~e~~~~~---~~~~~~I~ITGTnGKTTTt~ll~~iL~~~-g~~ 135 (461)
T PRK00421 73 SSAIPDDNP-ELVAARELGIPVVRRAEMLAEL---MRFRTSIAVAGTHGKTTTTSLLAHVLAEA-GLD 135 (461)
T ss_pred CCCCCCCCH-HHHHHHHCCCcEEeHHHHHHHH---HccCcEEEEECCCCHHHHHHHHHHHHHhc-CCC
Confidence 999875321 111122334444322 22222 21223444544433 5666666666543 443
No 437
>TIGR01035 hemA glutamyl-tRNA reductase. This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.
Probab=96.05 E-value=0.025 Score=55.10 Aligned_cols=140 Identities=19% Similarity=0.234 Sum_probs=77.2
Q ss_pred hhhHHHHHhhcCCCcccc-cccccc-ccccc--cccCCCCCCCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCch
Q 022947 9 NQRIARIAAHLHPPTLQI-EGESSG-LGRMD--CRAKGGSPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP 84 (289)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~--~~~~~~~~~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~ 84 (289)
-|+.-+.+..++..| .| .+..|. +.-.. ....+.....+|+|+|+ |.+|..++..|...|. .+|+++|++...
T Consensus 140 f~~a~~~~k~vr~~t-~i~~~~vSv~~~Av~la~~~~~~l~~~~VlViGa-G~iG~~~a~~L~~~G~-~~V~v~~rs~~r 216 (417)
T TIGR01035 140 FQKAFSVGKRVRTET-DISAGAVSISSAAVELAERIFGSLKGKKALLIGA-GEMGELVAKHLLRKGV-GKILIANRTYER 216 (417)
T ss_pred HHHHHHHhhhhhhhc-CCCCCCcCHHHHHHHHHHHHhCCccCCEEEEECC-hHHHHHHHHHHHHCCC-CEEEEEeCCHHH
Confidence 345555666666655 44 333332 11110 11112234569999998 9999999998888773 489999987522
Q ss_pred hHHhhhhcccCCceEEEEecCCCHHhhhCCCCEEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecC
Q 022947 85 GVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISN 164 (289)
Q Consensus 85 g~~~DL~~~~~~~~v~~~~~t~d~~eal~~aDiVIitag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~aiviv~tN 164 (289)
. .++.... ... .+. ..++.+++.++|+||.+.+.+..- -+.+.++.. +..-....+++=+++
T Consensus 217 a--~~la~~~-g~~--~i~-~~~l~~~l~~aDvVi~aT~s~~~i---------i~~e~l~~~---~~~~~~~~~viDla~ 278 (417)
T TIGR01035 217 A--EDLAKEL-GGE--AVK-FEDLEEYLAEADIVISSTGAPHPI---------VSKEDVERA---LRERTRPLFIIDIAV 278 (417)
T ss_pred H--HHHHHHc-CCe--Eee-HHHHHHHHhhCCEEEECCCCCCce---------EcHHHHHHH---HhcCCCCeEEEEeCC
Confidence 1 1122111 011 111 135668899999999987654211 011222211 111113458888899
Q ss_pred CCccc
Q 022947 165 PVNST 169 (289)
Q Consensus 165 Pvd~~ 169 (289)
|-|+=
T Consensus 279 Prdid 283 (417)
T TIGR01035 279 PRDVD 283 (417)
T ss_pred CCCCC
Confidence 98774
No 438
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=96.03 E-value=0.027 Score=53.97 Aligned_cols=83 Identities=16% Similarity=0.169 Sum_probs=54.1
Q ss_pred ccccCCCCCCCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchhHHhhhhcccCCceEEE-EecCCCHHhhhCCC
Q 022947 37 DCRAKGGSPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRG-FLGQQQLEDALTGM 115 (289)
Q Consensus 37 ~~~~~~~~~~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g~~~DL~~~~~~~~v~~-~~~t~d~~eal~~a 115 (289)
..+..++..+.||.|+|+ |.+|...+..+...|. +|..+|++..... .+.... ...+.. .....++.+.++++
T Consensus 158 ~~~~~~~l~~~~VlViGa-G~vG~~aa~~a~~lGa--~V~v~d~~~~~~~--~l~~~~-g~~v~~~~~~~~~l~~~l~~a 231 (370)
T TIGR00518 158 LLGGVPGVEPGDVTIIGG-GVVGTNAAKMANGLGA--TVTILDINIDRLR--QLDAEF-GGRIHTRYSNAYEIEDAVKRA 231 (370)
T ss_pred eecCCCCCCCceEEEEcC-CHHHHHHHHHHHHCCC--eEEEEECCHHHHH--HHHHhc-CceeEeccCCHHHHHHHHccC
Confidence 344444556778999998 9999999999988886 7999998752211 111110 011111 11123466788999
Q ss_pred CEEEEcCCCC
Q 022947 116 DIVIIPAGVP 125 (289)
Q Consensus 116 DiVIitag~~ 125 (289)
|+||.+++.+
T Consensus 232 DvVI~a~~~~ 241 (370)
T TIGR00518 232 DLLIGAVLIP 241 (370)
T ss_pred CEEEEccccC
Confidence 9999998654
No 439
>PRK00436 argC N-acetyl-gamma-glutamyl-phosphate reductase; Validated
Probab=96.03 E-value=0.019 Score=54.40 Aligned_cols=33 Identities=30% Similarity=0.401 Sum_probs=26.4
Q ss_pred CCEEEEEcCCCccHHHHHHHHHhCCCccEE-EEEe
Q 022947 46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVL-HLYD 79 (289)
Q Consensus 46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI-~LvD 79 (289)
++||+|+||+|.+|..++..|...+.. ++ .+.|
T Consensus 2 m~kVaIiGAtG~vG~~l~~~L~~~p~~-elv~v~~ 35 (343)
T PRK00436 2 MIKVGIVGASGYTGGELLRLLLNHPEV-EIVAVTS 35 (343)
T ss_pred CeEEEEECCCCHHHHHHHHHHHcCCCc-eEEEEEC
Confidence 579999999999999999888876544 55 5565
No 440
>PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional
Probab=96.02 E-value=0.032 Score=53.72 Aligned_cols=61 Identities=16% Similarity=0.240 Sum_probs=45.1
Q ss_pred CCCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchhHHhhhhcccCCceEEEEecCCCHHhhhCCCCEEEEcC
Q 022947 45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPA 122 (289)
Q Consensus 45 ~~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~eal~~aDiVIita 122 (289)
..++|+|||. |.||+.++..+..-|. +|..+|..... . .. ... ..++++.++.||+|++..
T Consensus 115 ~gktvGIIG~-G~IG~~vA~~l~a~G~--~V~~~dp~~~~---~--~~-----~~~----~~~L~ell~~sDiI~lh~ 175 (378)
T PRK15438 115 HDRTVGIVGV-GNVGRRLQARLEALGI--KTLLCDPPRAD---R--GD-----EGD----FRSLDELVQEADILTFHT 175 (378)
T ss_pred CCCEEEEECc-CHHHHHHHHHHHHCCC--EEEEECCcccc---c--cc-----ccc----cCCHHHHHhhCCEEEEeC
Confidence 4569999998 9999999999988887 99999863211 0 00 001 125778889999999875
No 441
>PLN02494 adenosylhomocysteinase
Probab=96.01 E-value=0.043 Score=54.13 Aligned_cols=91 Identities=23% Similarity=0.198 Sum_probs=61.5
Q ss_pred CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCch-hHHhhhhcccCCceEEEEecCCCHHhhhCCCCEEEEcCCC
Q 022947 46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP-GVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGV 124 (289)
Q Consensus 46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~-g~~~DL~~~~~~~~v~~~~~t~d~~eal~~aDiVIitag~ 124 (289)
.++|+|+|. |.+|..++..+...|. +|+.+|+++.+ ..+.+ +.. .+ .+++++++.+|+||.+.|.
T Consensus 254 GKtVvViGy-G~IGr~vA~~aka~Ga--~VIV~e~dp~r~~eA~~--~G~---~v------v~leEal~~ADVVI~tTGt 319 (477)
T PLN02494 254 GKVAVICGY-GDVGKGCAAAMKAAGA--RVIVTEIDPICALQALM--EGY---QV------LTLEDVVSEADIFVTTTGN 319 (477)
T ss_pred CCEEEEECC-CHHHHHHHHHHHHCCC--EEEEEeCCchhhHHHHh--cCC---ee------ccHHHHHhhCCEEEECCCC
Confidence 569999998 9999999999988887 89999987622 22221 111 11 1356789999999987653
Q ss_pred CCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecCCCc
Q 022947 125 PRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVN 167 (289)
Q Consensus 125 ~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~aiviv~tNPvd 167 (289)
. .++. .+.+....|.+++++++-+-+
T Consensus 320 ~---------------~vI~--~e~L~~MK~GAiLiNvGr~~~ 345 (477)
T PLN02494 320 K---------------DIIM--VDHMRKMKNNAIVCNIGHFDN 345 (477)
T ss_pred c---------------cchH--HHHHhcCCCCCEEEEcCCCCC
Confidence 2 1110 233444558999999988643
No 442
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=96.01 E-value=0.065 Score=52.35 Aligned_cols=91 Identities=21% Similarity=0.158 Sum_probs=60.2
Q ss_pred CCCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchh-HHhhhhcccCCceEEEEecCCCHHhhhCCCCEEEEcCC
Q 022947 45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPG-VTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAG 123 (289)
Q Consensus 45 ~~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g-~~~DL~~~~~~~~v~~~~~t~d~~eal~~aDiVIitag 123 (289)
..++|+|+|. |.+|..++..+...|. +|+.+|+++.+. .+.. + . ..+ .+++++++++|+||.+.|
T Consensus 211 ~Gk~VlViG~-G~IG~~vA~~lr~~Ga--~ViV~d~dp~ra~~A~~--~-G--~~v------~~l~eal~~aDVVI~aTG 276 (425)
T PRK05476 211 AGKVVVVAGY-GDVGKGCAQRLRGLGA--RVIVTEVDPICALQAAM--D-G--FRV------MTMEEAAELGDIFVTATG 276 (425)
T ss_pred CCCEEEEECC-CHHHHHHHHHHHhCCC--EEEEEcCCchhhHHHHh--c-C--CEe------cCHHHHHhCCCEEEECCC
Confidence 4569999998 9999999999988887 899999987321 1111 1 1 111 135688999999998764
Q ss_pred CCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecCCC
Q 022947 124 VPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPV 166 (289)
Q Consensus 124 ~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~aiviv~tNPv 166 (289)
.+ .++. .+.+....+.+++++++-+-
T Consensus 277 ~~---------------~vI~--~~~~~~mK~GailiNvG~~d 302 (425)
T PRK05476 277 NK---------------DVIT--AEHMEAMKDGAILANIGHFD 302 (425)
T ss_pred CH---------------HHHH--HHHHhcCCCCCEEEEcCCCC
Confidence 21 1222 12233345788999887554
No 443
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=96.00 E-value=0.037 Score=53.82 Aligned_cols=71 Identities=20% Similarity=0.198 Sum_probs=44.8
Q ss_pred CEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchhHHhhhhcccCCceEEE-EecCCCHHhh-hCCCCEEEEcC
Q 022947 47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRG-FLGQQQLEDA-LTGMDIVIIPA 122 (289)
Q Consensus 47 ~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g~~~DL~~~~~~~~v~~-~~~t~d~~ea-l~~aDiVIita 122 (289)
|||.|+|+ |.+|..++..|...|. +++++|.++... ..+.......-+.+ ......++++ +.++|.||++.
T Consensus 1 m~viIiG~-G~ig~~~a~~L~~~g~--~v~vid~~~~~~--~~~~~~~~~~~~~gd~~~~~~l~~~~~~~a~~vi~~~ 73 (453)
T PRK09496 1 MKIIIVGA-GQVGYTLAENLSGENN--DVTVIDTDEERL--RRLQDRLDVRTVVGNGSSPDVLREAGAEDADLLIAVT 73 (453)
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCC--cEEEEECCHHHH--HHHHhhcCEEEEEeCCCCHHHHHHcCCCcCCEEEEec
Confidence 58999998 9999999999988887 899999876221 11111000001111 0011124444 78999999985
No 444
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=96.00 E-value=0.051 Score=48.42 Aligned_cols=35 Identities=34% Similarity=0.469 Sum_probs=31.3
Q ss_pred CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCC
Q 022947 46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN 82 (289)
Q Consensus 46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~ 82 (289)
..||.|+|+ |.+|+.++..|+..|. .++.++|.+.
T Consensus 21 ~~~VlivG~-GglGs~va~~La~~Gv-g~i~lvD~D~ 55 (228)
T cd00757 21 NARVLVVGA-GGLGSPAAEYLAAAGV-GKLGLVDDDV 55 (228)
T ss_pred CCcEEEECC-CHHHHHHHHHHHHcCC-CEEEEEcCCE
Confidence 458999998 9999999999999995 6999999875
No 445
>PRK08594 enoyl-(acyl carrier protein) reductase; Provisional
Probab=95.99 E-value=0.34 Score=43.47 Aligned_cols=34 Identities=18% Similarity=0.050 Sum_probs=29.1
Q ss_pred CEEEEEcCC--CccHHHHHHHHHhCCCccEEEEEeCCC
Q 022947 47 FKVAVLGAA--GGIGQPLAMLMKINPLVSVLHLYDVVN 82 (289)
Q Consensus 47 ~KI~IIGaa--G~VGs~la~~L~~~g~~~eI~LvD~~~ 82 (289)
+.+.|+||+ +-+|..++..|++.|. +|++.+++.
T Consensus 8 k~~lItGa~~s~GIG~aia~~la~~G~--~v~~~~r~~ 43 (257)
T PRK08594 8 KTYVVMGVANKRSIAWGIARSLHNAGA--KLVFTYAGE 43 (257)
T ss_pred CEEEEECCCCCCCHHHHHHHHHHHCCC--EEEEecCcc
Confidence 478999985 6899999999999997 889887653
No 446
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=95.99 E-value=0.15 Score=48.25 Aligned_cols=127 Identities=20% Similarity=0.222 Sum_probs=73.6
Q ss_pred CCCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCc-hhHHhhhhcccCCceEEEEecCCCHHhhhCC-CCEEEEcC
Q 022947 45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT-PGVTADISHMDTNAVVRGFLGQQQLEDALTG-MDIVIIPA 122 (289)
Q Consensus 45 ~~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~-~g~~~DL~~~~~~~~v~~~~~t~d~~eal~~-aDiVIita 122 (289)
+..+|+|+|+ |-+|....+.++..+. +|+.+|+++. ...+.+|.-. .-+. .. ..|..+++++ +|+|+.|+
T Consensus 166 pG~~V~I~G~-GGlGh~avQ~Aka~ga--~Via~~~~~~K~e~a~~lGAd---~~i~-~~-~~~~~~~~~~~~d~ii~tv 237 (339)
T COG1064 166 PGKWVAVVGA-GGLGHMAVQYAKAMGA--EVIAITRSEEKLELAKKLGAD---HVIN-SS-DSDALEAVKEIADAIIDTV 237 (339)
T ss_pred CCCEEEEECC-cHHHHHHHHHHHHcCC--eEEEEeCChHHHHHHHHhCCc---EEEE-cC-CchhhHHhHhhCcEEEECC
Confidence 3569999999 9888777777776774 9999999873 2334444211 1111 11 1233344443 99999997
Q ss_pred CCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecCCC-cccHHH-HHHHHHHhCCCCCCcEEEe---eeccHH
Q 022947 123 GVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPV-NSTVPI-AAEVFKKVGTYDPKRLLGV---TMLDVV 197 (289)
Q Consensus 123 g~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~aiviv~tNPv-d~~t~~-~~~~~~~~~~~~~~kviG~---t~lds~ 197 (289)
+ + .-+... ++-..+.+.++.+.+|- ..+..+ +..+ -+...+|.|. +.-|+.
T Consensus 238 ~-~---------------~~~~~~---l~~l~~~G~~v~vG~~~~~~~~~~~~~~l-----i~~~~~i~GS~~g~~~d~~ 293 (339)
T COG1064 238 G-P---------------ATLEPS---LKALRRGGTLVLVGLPGGGPIPLLPAFLL-----ILKEISIVGSLVGTRADLE 293 (339)
T ss_pred C-h---------------hhHHHH---HHHHhcCCEEEEECCCCCcccCCCCHHHh-----hhcCeEEEEEecCCHHHHH
Confidence 6 3 112223 33345789999999994 432211 1111 1345688888 455555
Q ss_pred HHHHHH
Q 022947 198 RANTFV 203 (289)
Q Consensus 198 R~~~~l 203 (289)
.+..+.
T Consensus 294 e~l~f~ 299 (339)
T COG1064 294 EALDFA 299 (339)
T ss_pred HHHHHH
Confidence 444444
No 447
>PRK15409 bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional
Probab=95.99 E-value=0.038 Score=52.04 Aligned_cols=93 Identities=18% Similarity=0.147 Sum_probs=57.8
Q ss_pred CCCEEEEEcCCCccHHHHHHHHH-hCCCccEEEEEeCCCchhHHhhhhcccCCceEEEEecCCCHHhhhCCCCEEEEcCC
Q 022947 45 PGFKVAVLGAAGGIGQPLAMLMK-INPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAG 123 (289)
Q Consensus 45 ~~~KI~IIGaaG~VGs~la~~L~-~~g~~~eI~LvD~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~eal~~aDiVIitag 123 (289)
..++|+|||. |.+|..++..+. --|. +|+.+|.........++ .+. + .++++.++.||+|+++..
T Consensus 144 ~gktvGIiG~-G~IG~~va~~l~~~fgm--~V~~~~~~~~~~~~~~~-------~~~-~---~~l~ell~~sDvv~lh~p 209 (323)
T PRK15409 144 HHKTLGIVGM-GRIGMALAQRAHFGFNM--PILYNARRHHKEAEERF-------NAR-Y---CDLDTLLQESDFVCIILP 209 (323)
T ss_pred CCCEEEEEcc-cHHHHHHHHHHHhcCCC--EEEEECCCCchhhHHhc-------CcE-e---cCHHHHHHhCCEEEEeCC
Confidence 3569999998 999999998886 5566 88888865321111111 111 1 257788999999999853
Q ss_pred CCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecC
Q 022947 124 VPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISN 164 (289)
Q Consensus 124 ~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~aiviv~tN 164 (289)
.. + + +-.++. .+.++...|.+++||++-
T Consensus 210 lt--~-~--------T~~li~--~~~l~~mk~ga~lIN~aR 237 (323)
T PRK15409 210 LT--D-E--------THHLFG--AEQFAKMKSSAIFINAGR 237 (323)
T ss_pred CC--h-H--------HhhccC--HHHHhcCCCCeEEEECCC
Confidence 21 1 1 111111 123444568999999863
No 448
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=95.98 E-value=0.069 Score=46.85 Aligned_cols=70 Identities=11% Similarity=0.079 Sum_probs=45.1
Q ss_pred CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchhHHhhhhcccCCceEEEEecCCCHHhhhCCCCEEEEcCC
Q 022947 46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAG 123 (289)
Q Consensus 46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~eal~~aDiVIitag 123 (289)
.+||.|||+ |.||...+..|...|. +|++++.... ....++.+.. .+......-+ ++.+.++|+||.+.+
T Consensus 10 ~k~vLVIGg-G~va~~ka~~Ll~~ga--~V~VIs~~~~-~~l~~l~~~~---~i~~~~~~~~-~~~l~~adlViaaT~ 79 (202)
T PRK06718 10 NKRVVIVGG-GKVAGRRAITLLKYGA--HIVVISPELT-ENLVKLVEEG---KIRWKQKEFE-PSDIVDAFLVIAATN 79 (202)
T ss_pred CCEEEEECC-CHHHHHHHHHHHHCCC--eEEEEcCCCC-HHHHHHHhCC---CEEEEecCCC-hhhcCCceEEEEcCC
Confidence 459999999 9999999999988885 8999975432 1222333221 1222111112 356899999888743
No 449
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=95.98 E-value=0.063 Score=52.14 Aligned_cols=90 Identities=24% Similarity=0.184 Sum_probs=58.8
Q ss_pred CCCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchh-HHhhhhcccCCceEEEEecCCCHHhhhCCCCEEEEcCC
Q 022947 45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPG-VTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAG 123 (289)
Q Consensus 45 ~~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g-~~~DL~~~~~~~~v~~~~~t~d~~eal~~aDiVIitag 123 (289)
...+|+|+|. |.+|..++..+...|. +|+.+|+++.+. .+. .+. ..+ .+.+++++++|+||.+.|
T Consensus 194 ~Gk~VvViG~-G~IG~~vA~~ak~~Ga--~ViV~d~dp~r~~~A~--~~G---~~v------~~leeal~~aDVVItaTG 259 (406)
T TIGR00936 194 AGKTVVVAGY-GWCGKGIAMRARGMGA--RVIVTEVDPIRALEAA--MDG---FRV------MTMEEAAKIGDIFITATG 259 (406)
T ss_pred CcCEEEEECC-CHHHHHHHHHHhhCcC--EEEEEeCChhhHHHHH--hcC---CEe------CCHHHHHhcCCEEEECCC
Confidence 4569999998 9999999999988886 899999887321 111 111 111 134578999999998754
Q ss_pred CCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecCC
Q 022947 124 VPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNP 165 (289)
Q Consensus 124 ~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~aiviv~tNP 165 (289)
.+ .++.. +.+....+.+++++++-.
T Consensus 260 ~~---------------~vI~~--~~~~~mK~GailiN~G~~ 284 (406)
T TIGR00936 260 NK---------------DVIRG--EHFENMKDGAIVANIGHF 284 (406)
T ss_pred CH---------------HHHHH--HHHhcCCCCcEEEEECCC
Confidence 21 22221 123334477888888764
No 450
>PRK08291 ectoine utilization protein EutC; Validated
Probab=95.97 E-value=0.033 Score=52.50 Aligned_cols=73 Identities=16% Similarity=0.238 Sum_probs=48.9
Q ss_pred CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCc--hhHHhhhhcccCCceEEEEecCCCHHhhhCCCCEEEEcCC
Q 022947 46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAG 123 (289)
Q Consensus 46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~--~g~~~DL~~~~~~~~v~~~~~t~d~~eal~~aDiVIitag 123 (289)
.++|+|+|+ |..|...+..+....-+.+|.+++++.. +..+.++.+.. ...+.. .+|+++++++||+||.+..
T Consensus 132 ~~~v~IiGa-G~~a~~~~~al~~~~~~~~V~v~~R~~~~a~~l~~~~~~~~-g~~v~~---~~d~~~al~~aDiVi~aT~ 206 (330)
T PRK08291 132 ASRAAVIGA-GEQARLQLEALTLVRPIREVRVWARDAAKAEAYAADLRAEL-GIPVTV---ARDVHEAVAGADIIVTTTP 206 (330)
T ss_pred CCEEEEECC-CHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHhhcc-CceEEE---eCCHHHHHccCCEEEEeeC
Confidence 468999998 9999988777765333579999998762 23333333211 122222 3477899999999988743
No 451
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=95.97 E-value=0.093 Score=46.16 Aligned_cols=70 Identities=19% Similarity=0.140 Sum_probs=47.4
Q ss_pred CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchhHHhhhhcccCCceEEEEecCCCHHhhhCCCCEEEEcCC
Q 022947 46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAG 123 (289)
Q Consensus 46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~eal~~aDiVIitag 123 (289)
.+||.|||+ |.||..-+..|+..|- +|++++.+.. ....++... .++....+..+ .+.+.++|+||.+-+
T Consensus 9 gk~vlVvGg-G~va~rk~~~Ll~~ga--~VtVvsp~~~-~~l~~l~~~---~~i~~~~~~~~-~~dl~~~~lVi~at~ 78 (205)
T TIGR01470 9 GRAVLVVGG-GDVALRKARLLLKAGA--QLRVIAEELE-SELTLLAEQ---GGITWLARCFD-ADILEGAFLVIAATD 78 (205)
T ss_pred CCeEEEECc-CHHHHHHHHHHHHCCC--EEEEEcCCCC-HHHHHHHHc---CCEEEEeCCCC-HHHhCCcEEEEECCC
Confidence 358999999 9999999999998886 8999987542 122233322 23433322223 367899999998744
No 452
>PRK00257 erythronate-4-phosphate dehydrogenase; Validated
Probab=95.96 E-value=0.032 Score=53.80 Aligned_cols=61 Identities=21% Similarity=0.231 Sum_probs=45.3
Q ss_pred CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchhHHhhhhcccCCceEEEEecCCCHHhhhCCCCEEEEcCC
Q 022947 46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAG 123 (289)
Q Consensus 46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~eal~~aDiVIitag 123 (289)
.++|+|||. |.||+.++..+...|. +|+.+|..... . .. ... + .++++.+++||+|++...
T Consensus 116 gktvGIIG~-G~IG~~va~~l~a~G~--~V~~~Dp~~~~---~--~~-----~~~-~---~~l~ell~~aDiV~lh~P 176 (381)
T PRK00257 116 ERTYGVVGA-GHVGGRLVRVLRGLGW--KVLVCDPPRQE---A--EG-----DGD-F---VSLERILEECDVISLHTP 176 (381)
T ss_pred cCEEEEECC-CHHHHHHHHHHHHCCC--EEEEECCcccc---c--cc-----Ccc-c---cCHHHHHhhCCEEEEeCc
Confidence 468999998 9999999999988888 99999974321 0 00 011 1 257788899999999753
No 453
>PRK08415 enoyl-(acyl carrier protein) reductase; Provisional
Probab=95.95 E-value=0.35 Score=43.95 Aligned_cols=35 Identities=20% Similarity=0.090 Sum_probs=30.0
Q ss_pred CCEEEEEcCC--CccHHHHHHHHHhCCCccEEEEEeCCC
Q 022947 46 GFKVAVLGAA--GGIGQPLAMLMKINPLVSVLHLYDVVN 82 (289)
Q Consensus 46 ~~KI~IIGaa--G~VGs~la~~L~~~g~~~eI~LvD~~~ 82 (289)
.+.+.|+||+ +-+|..++..|+..|. .|++.|+++
T Consensus 5 ~k~~lItGas~~~GIG~aiA~~la~~G~--~Vil~~r~~ 41 (274)
T PRK08415 5 GKKGLIVGVANNKSIAYGIAKACFEQGA--ELAFTYLNE 41 (274)
T ss_pred CcEEEEECCCCCCCHHHHHHHHHHHCCC--EEEEEecCH
Confidence 3578999985 5799999999999997 899999874
No 454
>PRK08690 enoyl-(acyl carrier protein) reductase; Provisional
Probab=95.95 E-value=0.53 Score=42.20 Aligned_cols=35 Identities=23% Similarity=0.229 Sum_probs=28.8
Q ss_pred CCEEEEEcC--CCccHHHHHHHHHhCCCccEEEEEeCCC
Q 022947 46 GFKVAVLGA--AGGIGQPLAMLMKINPLVSVLHLYDVVN 82 (289)
Q Consensus 46 ~~KI~IIGa--aG~VGs~la~~L~~~g~~~eI~LvD~~~ 82 (289)
.+.+.|+|| ++-+|..++..|+..|. .|++.++++
T Consensus 6 ~k~~lITGa~~~~GIG~a~a~~l~~~G~--~v~~~~~~~ 42 (261)
T PRK08690 6 GKKILITGMISERSIAYGIAKACREQGA--ELAFTYVVD 42 (261)
T ss_pred CcEEEEECCCCCCcHHHHHHHHHHHCCC--EEEEEcCcH
Confidence 457999996 46899999999999997 888877654
No 455
>PRK08618 ornithine cyclodeaminase; Validated
Probab=95.95 E-value=0.031 Score=52.55 Aligned_cols=73 Identities=12% Similarity=0.179 Sum_probs=48.0
Q ss_pred CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCc--hhHHhhhhcccCCceEEEEecCCCHHhhhCCCCEEEEcCC
Q 022947 46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAG 123 (289)
Q Consensus 46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~--~g~~~DL~~~~~~~~v~~~~~t~d~~eal~~aDiVIitag 123 (289)
..+++|||+ |..|...+..++...-+.+|.++|+++. ...+.++.+.. ...+..+ ++++++++++|+||.+-.
T Consensus 127 ~~~v~iiGa-G~~a~~~~~al~~~~~~~~v~v~~r~~~~a~~~~~~~~~~~-~~~~~~~---~~~~~~~~~aDiVi~aT~ 201 (325)
T PRK08618 127 AKTLCLIGT-GGQAKGQLEAVLAVRDIERVRVYSRTFEKAYAFAQEIQSKF-NTEIYVV---NSADEAIEEADIIVTVTN 201 (325)
T ss_pred CcEEEEECC-cHHHHHHHHHHHhcCCccEEEEECCCHHHHHHHHHHHHHhc-CCcEEEe---CCHHHHHhcCCEEEEccC
Confidence 458999998 9999877766554333579999999862 22233333211 1233322 467889999999998743
No 456
>COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]
Probab=95.93 E-value=0.068 Score=50.39 Aligned_cols=93 Identities=28% Similarity=0.328 Sum_probs=59.8
Q ss_pred CCCCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchhHHhhhhcccCCceEEEEecCCCHHhhhCCCCEEEEcCC
Q 022947 44 SPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAG 123 (289)
Q Consensus 44 ~~~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~eal~~aDiVIitag 123 (289)
...++++|+|. |.||+.+|..+.--|. +|+-+|+.+. .+..+... .+. . ++++.++.||+|++.+.
T Consensus 144 l~gktvGIiG~-GrIG~avA~r~~~Fgm--~v~y~~~~~~-~~~~~~~~------~~y---~-~l~ell~~sDii~l~~P 209 (324)
T COG1052 144 LRGKTLGIIGL-GRIGQAVARRLKGFGM--KVLYYDRSPN-PEAEKELG------ARY---V-DLDELLAESDIISLHCP 209 (324)
T ss_pred CCCCEEEEECC-CHHHHHHHHHHhcCCC--EEEEECCCCC-hHHHhhcC------cee---c-cHHHHHHhCCEEEEeCC
Confidence 34679999998 9999999998884455 9999998763 11111111 111 1 26788999999999753
Q ss_pred CCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEec
Q 022947 124 VPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLIS 163 (289)
Q Consensus 124 ~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~aiviv~t 163 (289)
.. + ++|. ..| .+.+++..|.+++||++
T Consensus 210 lt--~-~T~h---Lin-------~~~l~~mk~ga~lVNta 236 (324)
T COG1052 210 LT--P-ETRH---LIN-------AEELAKMKPGAILVNTA 236 (324)
T ss_pred CC--h-HHhh---hcC-------HHHHHhCCCCeEEEECC
Confidence 21 1 1221 112 23355566889998875
No 457
>PRK06436 glycerate dehydrogenase; Provisional
Probab=95.91 E-value=0.036 Score=51.78 Aligned_cols=95 Identities=20% Similarity=0.247 Sum_probs=61.4
Q ss_pred CCCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchhHHhhhhcccCCceEEEEecCCCHHhhhCCCCEEEEcCCC
Q 022947 45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGV 124 (289)
Q Consensus 45 ~~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~eal~~aDiVIitag~ 124 (289)
..++|+|+|. |.+|+.+|..+...|. +|+.+|+.... . . .. .. ..++++.++.||+|+++...
T Consensus 121 ~gktvgIiG~-G~IG~~vA~~l~afG~--~V~~~~r~~~~-------~-~--~~-~~---~~~l~ell~~aDiv~~~lp~ 183 (303)
T PRK06436 121 YNKSLGILGY-GGIGRRVALLAKAFGM--NIYAYTRSYVN-------D-G--IS-SI---YMEPEDIMKKSDFVLISLPL 183 (303)
T ss_pred CCCEEEEECc-CHHHHHHHHHHHHCCC--EEEEECCCCcc-------c-C--cc-cc---cCCHHHHHhhCCEEEECCCC
Confidence 3569999998 9999999988877787 99999975311 0 0 00 00 12577889999999998532
Q ss_pred CCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEec--CCCccc
Q 022947 125 PRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLIS--NPVNST 169 (289)
Q Consensus 125 ~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~aiviv~t--NPvd~~ 169 (289)
. + +++. ++ | .+.+....|.+++|+++ .++|.-
T Consensus 184 t--~-~T~~-li--~-------~~~l~~mk~ga~lIN~sRG~~vd~~ 217 (303)
T PRK06436 184 T--D-ETRG-MI--N-------SKMLSLFRKGLAIINVARADVVDKN 217 (303)
T ss_pred C--c-hhhc-Cc--C-------HHHHhcCCCCeEEEECCCccccCHH
Confidence 1 1 1111 11 1 23344446889999985 556653
No 458
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.85 E-value=0.068 Score=52.04 Aligned_cols=123 Identities=24% Similarity=0.310 Sum_probs=70.5
Q ss_pred CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchhH---HhhhhcccCCceEEEEecCCCHHhhhCCCCEEEEcC
Q 022947 46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGV---TADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPA 122 (289)
Q Consensus 46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g~---~~DL~~~~~~~~v~~~~~t~d~~eal~~aDiVIita 122 (289)
.++|.|+|+ |.+|..+|..|+..|. +|+++|.+..... ..+|... .+..+.+. ...+...++|+||.++
T Consensus 5 ~k~v~iiG~-g~~G~~~A~~l~~~G~--~V~~~d~~~~~~~~~~~~~l~~~----~~~~~~~~-~~~~~~~~~d~vv~~~ 76 (450)
T PRK14106 5 GKKVLVVGA-GVSGLALAKFLKKLGA--KVILTDEKEEDQLKEALEELGEL----GIELVLGE-YPEEFLEGVDLVVVSP 76 (450)
T ss_pred CCEEEEECC-CHHHHHHHHHHHHCCC--EEEEEeCCchHHHHHHHHHHHhc----CCEEEeCC-cchhHhhcCCEEEECC
Confidence 458999998 8899999999999998 9999999752111 1222211 12222211 1224567899999998
Q ss_pred CCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecCCCc--ccHHHHHHHHHH
Q 022947 123 GVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVN--STVPIAAEVFKK 179 (289)
Q Consensus 123 g~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~aiviv~tNPvd--~~t~~~~~~~~~ 179 (289)
|.+.... .....-..+++++.......... + ..+|-+|=... +.+.++..++..
T Consensus 77 g~~~~~~-~~~~a~~~~i~~~~~~~~~~~~~-~-~~vI~ITGS~GKTTt~~~l~~iL~~ 132 (450)
T PRK14106 77 GVPLDSP-PVVQAHKKGIEVIGEVELAYRFS-K-APIVAITGTNGKTTTTTLLGEIFKN 132 (450)
T ss_pred CCCCCCH-HHHHHHHCCCcEEeHHHHHHhhc-C-CCEEEEeCCCchHHHHHHHHHHHHH
Confidence 8753211 11111234555555444433322 2 34555555544 555566666654
No 459
>PF07991 IlvN: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR013116 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates. This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.; GO: 0004455 ketol-acid reductoisomerase activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 3FR8_B 3FR7_A 1NP3_C 1YRL_C.
Probab=95.84 E-value=0.14 Score=43.51 Aligned_cols=65 Identities=17% Similarity=0.206 Sum_probs=41.3
Q ss_pred CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchhHHhhhhcccCCceEEEEecCCCHHhhhCCCCEEEEcC
Q 022947 46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPA 122 (289)
Q Consensus 46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~eal~~aDiVIita 122 (289)
.++|+|||. |.-|...|..|...|+ +|+.-.+........ ...+.+ . ..++.|+.+.||+|+++.
T Consensus 4 ~k~IAViGy-GsQG~a~AlNLrDSG~--~V~Vglr~~s~s~~~--A~~~Gf-~------v~~~~eAv~~aDvV~~L~ 68 (165)
T PF07991_consen 4 GKTIAVIGY-GSQGHAHALNLRDSGV--NVIVGLREGSASWEK--AKADGF-E------VMSVAEAVKKADVVMLLL 68 (165)
T ss_dssp TSEEEEES--SHHHHHHHHHHHHCC---EEEEEE-TTCHHHHH--HHHTT--E------CCEHHHHHHC-SEEEE-S
T ss_pred CCEEEEECC-ChHHHHHHHHHHhCCC--CEEEEecCCCcCHHH--HHHCCC-e------eccHHHHHhhCCEEEEeC
Confidence 469999999 9999999999999998 777666544322111 111111 1 124679999999999984
No 460
>COG0702 Predicted nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=95.83 E-value=0.024 Score=50.49 Aligned_cols=74 Identities=16% Similarity=0.175 Sum_probs=49.1
Q ss_pred CEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchhHHhhhhcccCCceEEEEecCCCHHhhhCCCCEEEEcCCCC
Q 022947 47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVP 125 (289)
Q Consensus 47 ~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~eal~~aDiVIitag~~ 125 (289)
|+|.|+||+|++|+++...|+..++ +|+..-++......+. .........+.....+..++++.|.++++.+..
T Consensus 1 ~~ilV~GatG~~G~~~~~~L~~~~~--~v~~~~r~~~~~~~~~---~~v~~~~~d~~~~~~l~~a~~G~~~~~~i~~~~ 74 (275)
T COG0702 1 MKILVTGATGFVGGAVVRELLARGH--EVRAAVRNPEAAAALA---GGVEVVLGDLRDPKSLVAGAKGVDGVLLISGLL 74 (275)
T ss_pred CeEEEEecccchHHHHHHHHHhCCC--EEEEEEeCHHHHHhhc---CCcEEEEeccCCHhHHHHHhccccEEEEEeccc
Confidence 5899999999999999999998887 7777766542222222 111111112223345678889999999986643
No 461
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=95.83 E-value=0.031 Score=47.70 Aligned_cols=55 Identities=31% Similarity=0.524 Sum_probs=43.3
Q ss_pred CCCEEEEEcCCCc-cHHHHHHHHHhCCCccEEEEEeCCCchhHHhhhhcccCCceEEEEecCCCHHhhhCCCCEEEEcCC
Q 022947 45 PGFKVAVLGAAGG-IGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAG 123 (289)
Q Consensus 45 ~~~KI~IIGaaG~-VGs~la~~L~~~g~~~eI~LvD~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~eal~~aDiVIitag 123 (289)
...||.|+|+ |. +|..++..|...|. +|.+++++. .++.+.+++||+||.+.+
T Consensus 43 ~gk~vlViG~-G~~~G~~~a~~L~~~g~--~V~v~~r~~-----------------------~~l~~~l~~aDiVIsat~ 96 (168)
T cd01080 43 AGKKVVVVGR-SNIVGKPLAALLLNRNA--TVTVCHSKT-----------------------KNLKEHTKQADIVIVAVG 96 (168)
T ss_pred CCCEEEEECC-cHHHHHHHHHHHhhCCC--EEEEEECCc-----------------------hhHHHHHhhCCEEEEcCC
Confidence 4569999999 86 58889999988886 788887531 245678999999999987
Q ss_pred CC
Q 022947 124 VP 125 (289)
Q Consensus 124 ~~ 125 (289)
.|
T Consensus 97 ~~ 98 (168)
T cd01080 97 KP 98 (168)
T ss_pred CC
Confidence 65
No 462
>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol
Probab=95.83 E-value=0.077 Score=46.35 Aligned_cols=35 Identities=23% Similarity=0.394 Sum_probs=31.1
Q ss_pred CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCC
Q 022947 46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN 82 (289)
Q Consensus 46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~ 82 (289)
..||+|+|+ |.+|+.++..|+..|. .++.++|.+.
T Consensus 19 ~s~VlviG~-gglGsevak~L~~~GV-g~i~lvD~d~ 53 (198)
T cd01485 19 SAKVLIIGA-GALGAEIAKNLVLAGI-DSITIVDHRL 53 (198)
T ss_pred hCcEEEECC-CHHHHHHHHHHHHcCC-CEEEEEECCc
Confidence 468999999 8899999999999996 6899999874
No 463
>PF02423 OCD_Mu_crystall: Ornithine cyclodeaminase/mu-crystallin family; InterPro: IPR003462 This entry represents the bacterial ornithine cyclodeaminase enzyme family, which catalyse the deamination of ornithine to proline []. The family also includes mu-crystallin, a mammalian homologue of bacterial ornithine cyclodeaminase [], which is the major component of the eye lens in several Australian marsupials. mRNA for mu-crystallin has also been found in human retina [].; PDB: 1U7H_B 1X7D_B 2I99_B 3HDJ_A 1VLL_B 1OMO_A.
Probab=95.83 E-value=0.028 Score=52.59 Aligned_cols=69 Identities=19% Similarity=0.294 Sum_probs=44.8
Q ss_pred CEEEEEcCCCccHHHHHHHHHh-CCCccEEEEEeCCC--chhHHhhhhcccCCceEEEEecCCCHHhhhCCCCEEEEcC
Q 022947 47 FKVAVLGAAGGIGQPLAMLMKI-NPLVSVLHLYDVVN--TPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPA 122 (289)
Q Consensus 47 ~KI~IIGaaG~VGs~la~~L~~-~g~~~eI~LvD~~~--~~g~~~DL~~~~~~~~v~~~~~t~d~~eal~~aDiVIita 122 (289)
.+++|+|+ |..+...+..+.. .+ +.+|.++|++. .+..+.++.+ . ...+... ++.++++++||+|+.+-
T Consensus 129 ~~l~viGa-G~QA~~~~~a~~~~~~-i~~v~v~~r~~~~~~~~~~~~~~-~-~~~v~~~---~~~~~av~~aDii~taT 200 (313)
T PF02423_consen 129 RTLGVIGA-GVQARWHLRALAAVRP-IKEVRVYSRSPERAEAFAARLRD-L-GVPVVAV---DSAEEAVRGADIIVTAT 200 (313)
T ss_dssp -EEEEE---SHHHHHHHHHHHHHS---SEEEEE-SSHHHHHHHHHHHHC-C-CTCEEEE---SSHHHHHTTSSEEEE--
T ss_pred ceEEEECC-CHHHHHHHHHHHHhCC-ceEEEEEccChhHHHHHHHhhcc-c-cccceec---cchhhhcccCCEEEEcc
Confidence 48999998 9999888776654 55 78999999987 3444555555 2 3344432 46889999999998763
No 464
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=95.81 E-value=0.069 Score=48.15 Aligned_cols=35 Identities=23% Similarity=0.402 Sum_probs=31.5
Q ss_pred CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCC
Q 022947 46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN 82 (289)
Q Consensus 46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~ 82 (289)
..||.|+|+ |-+|+.++..|+..|. .++.++|.+.
T Consensus 24 ~~~VlvvG~-GglGs~va~~La~~Gv-g~i~lvD~D~ 58 (240)
T TIGR02355 24 ASRVLIVGL-GGLGCAASQYLAAAGV-GNLTLLDFDT 58 (240)
T ss_pred CCcEEEECc-CHHHHHHHHHHHHcCC-CEEEEEeCCc
Confidence 458999998 9999999999999985 6999999876
No 465
>PRK07533 enoyl-(acyl carrier protein) reductase; Provisional
Probab=95.81 E-value=0.43 Score=42.69 Aligned_cols=34 Identities=18% Similarity=0.040 Sum_probs=29.3
Q ss_pred CEEEEEcCC--CccHHHHHHHHHhCCCccEEEEEeCCC
Q 022947 47 FKVAVLGAA--GGIGQPLAMLMKINPLVSVLHLYDVVN 82 (289)
Q Consensus 47 ~KI~IIGaa--G~VGs~la~~L~~~g~~~eI~LvD~~~ 82 (289)
+.+.|+||+ +-+|..++..|+..|. .|++.|+++
T Consensus 11 k~~lItGas~g~GIG~a~a~~la~~G~--~v~l~~r~~ 46 (258)
T PRK07533 11 KRGLVVGIANEQSIAWGCARAFRALGA--ELAVTYLND 46 (258)
T ss_pred CEEEEECCCCCCcHHHHHHHHHHHcCC--EEEEEeCCh
Confidence 478899986 3799999999999997 899999875
No 466
>PRK06407 ornithine cyclodeaminase; Provisional
Probab=95.80 E-value=0.039 Score=51.43 Aligned_cols=73 Identities=14% Similarity=0.047 Sum_probs=51.1
Q ss_pred CCCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCC--chhHHhhhhcccCCceEEEEecCCCHHhhhCCCCEEEEcC
Q 022947 45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPA 122 (289)
Q Consensus 45 ~~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~--~~g~~~DL~~~~~~~~v~~~~~t~d~~eal~~aDiVIita 122 (289)
...+++|||+ |..|...+..+..-..+++|.++|++. ....+.++.+.. ...+... ++.++++++||+|+.+-
T Consensus 116 da~~l~iiGa-G~QA~~~~~a~~~v~~i~~v~v~~r~~~~a~~f~~~~~~~~-~~~v~~~---~~~~eav~~aDIV~taT 190 (301)
T PRK06407 116 NVENFTIIGS-GFQAETQLEGMASVYNPKRIRVYSRNFDHARAFAERFSKEF-GVDIRPV---DNAEAALRDADTITSIT 190 (301)
T ss_pred CCcEEEEECC-cHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHHhc-CCcEEEe---CCHHHHHhcCCEEEEec
Confidence 3568999998 999998877666544578999999987 333344444321 2234432 46789999999999763
No 467
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.76 E-value=0.083 Score=52.00 Aligned_cols=124 Identities=15% Similarity=0.088 Sum_probs=68.9
Q ss_pred CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCc-h-hH-HhhhhcccCCceEEEEecCCCHHhhhCCCCEEEEcC
Q 022947 46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT-P-GV-TADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPA 122 (289)
Q Consensus 46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~-~-g~-~~DL~~~~~~~~v~~~~~t~d~~eal~~aDiVIita 122 (289)
.+||.|+|+ |.+|..+|..|...|. +|.++|..+. . .. ...|... .+..+.+. +. +...++|+||++.
T Consensus 16 ~~~v~viG~-G~~G~~~A~~L~~~G~--~V~~~d~~~~~~~~~~~~~l~~~----gv~~~~~~-~~-~~~~~~D~Vv~s~ 86 (480)
T PRK01438 16 GLRVVVAGL-GVSGFAAADALLELGA--RVTVVDDGDDERHRALAAILEAL----GATVRLGP-GP-TLPEDTDLVVTSP 86 (480)
T ss_pred CCEEEEECC-CHHHHHHHHHHHHCCC--EEEEEeCCchhhhHHHHHHHHHc----CCEEEECC-Cc-cccCCCCEEEECC
Confidence 348999998 9999999999999997 8999997651 1 11 1123222 22222222 11 2356799999999
Q ss_pred CCCCCCCCchhhHHHhhHHHHHH--HHHHHHHhCCCcEEEEecCCCc--ccHHHHHHHHHH
Q 022947 123 GVPRKPGMTRDDLFNINAGIVKT--LCEGIAKCCPKAIVNLISNPVN--STVPIAAEVFKK 179 (289)
Q Consensus 123 g~~~~~g~~r~d~~~~N~~i~~~--i~~~i~~~~p~aiviv~tNPvd--~~t~~~~~~~~~ 179 (289)
|++..... .......+++++.+ ++..+.+...+..+|-+|=... +.+.+++.+++.
T Consensus 87 Gi~~~~~~-~~~a~~~gi~v~~~~e~~~~~~~~~~~~~~I~VTGTnGKTTTt~mi~~iL~~ 146 (480)
T PRK01438 87 GWRPDAPL-LAAAADAGIPVWGEVELAWRLRDPDRPAPWLAVTGTNGKTTTVQMLASMLRA 146 (480)
T ss_pred CcCCCCHH-HHHHHHCCCeecchHHHHHHhhhccCCCCEEEEeCCCcHHHHHHHHHHHHHH
Confidence 98643211 11112334444432 2222221112334555655555 566677666654
No 468
>PRK08664 aspartate-semialdehyde dehydrogenase; Reviewed
Probab=95.75 E-value=0.034 Score=52.81 Aligned_cols=74 Identities=23% Similarity=0.308 Sum_probs=44.8
Q ss_pred CCCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCC-chhHHhh-hh-c-----ccC-CceEEEEecCCCHHhhhCCC
Q 022947 45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-TPGVTAD-IS-H-----MDT-NAVVRGFLGQQQLEDALTGM 115 (289)
Q Consensus 45 ~~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~-~~g~~~D-L~-~-----~~~-~~~v~~~~~t~d~~eal~~a 115 (289)
+++||+|+||+|++|+.++..|...+.. ||++++..+ ..|+... +. . ... ...+... ..+. +.+.++
T Consensus 2 ~~~~V~I~GatG~iG~~l~~~L~~~p~~-el~~~~~s~~~~G~~~~~~~~~~~~~~~~~~~~~~~v~--~~~~-~~~~~~ 77 (349)
T PRK08664 2 MKLKVGILGATGMVGQRFVQLLANHPWF-EVTALAASERSAGKTYGEAVRWQLDGPIPEEVADMEVV--STDP-EAVDDV 77 (349)
T ss_pred CCcEEEEECCCCHHHHHHHHHHHcCCCc-eEEEEEcChhhcCCcccccccccccccccccccceEEE--eCCH-HHhcCC
Confidence 4579999999999999999988876643 888884433 2332221 10 0 000 0122221 1243 557899
Q ss_pred CEEEEcC
Q 022947 116 DIVIIPA 122 (289)
Q Consensus 116 DiVIita 122 (289)
|+||.+.
T Consensus 78 DvVf~a~ 84 (349)
T PRK08664 78 DIVFSAL 84 (349)
T ss_pred CEEEEeC
Confidence 9998864
No 469
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=95.74 E-value=0.074 Score=53.13 Aligned_cols=109 Identities=17% Similarity=0.236 Sum_probs=65.8
Q ss_pred ccCCCCCCCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCC-chhHHhhhhccc--CCc-e--------EEEEecCC
Q 022947 39 RAKGGSPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-TPGVTADISHMD--TNA-V--------VRGFLGQQ 106 (289)
Q Consensus 39 ~~~~~~~~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~-~~g~~~DL~~~~--~~~-~--------v~~~~~t~ 106 (289)
|+.+...+.||+|+|+ |.+|...+..+...|- +|+.+|+++ ....+..+.... ... . .+.. +.
T Consensus 158 taaG~~pg~kVlViGa-G~iGL~Ai~~Ak~lGA--~V~a~D~~~~rle~aeslGA~~v~i~~~e~~~~~~gya~~~--s~ 232 (509)
T PRK09424 158 TAAGKVPPAKVLVIGA-GVAGLAAIGAAGSLGA--IVRAFDTRPEVAEQVESMGAEFLELDFEEEGGSGDGYAKVM--SE 232 (509)
T ss_pred eccCCcCCCEEEEECC-cHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHcCCeEEEeccccccccccchhhhc--ch
Confidence 4445666889999999 9999998888888885 799999987 222333222110 000 0 0000 11
Q ss_pred CH--------HhhhCCCCEEEEcCCCCCCCCCchhhHHHhhHHH-HHHHHHHHHHhCCCcEEEEecCC
Q 022947 107 QL--------EDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGI-VKTLCEGIAKCCPKAIVNLISNP 165 (289)
Q Consensus 107 d~--------~eal~~aDiVIitag~~~~~g~~r~d~~~~N~~i-~~~i~~~i~~~~p~aiviv~tNP 165 (289)
++ .+.++++|+||.|+|.|.++.. .. .++..+. ..|.+.|+.++-+
T Consensus 233 ~~~~~~~~~~~~~~~gaDVVIetag~pg~~aP----------~lit~~~v~~---mkpGgvIVdvg~~ 287 (509)
T PRK09424 233 EFIKAEMALFAEQAKEVDIIITTALIPGKPAP----------KLITAEMVAS---MKPGSVIVDLAAE 287 (509)
T ss_pred hHHHHHHHHHHhccCCCCEEEECCCCCcccCc----------chHHHHHHHh---cCCCCEEEEEccC
Confidence 21 2224789999999998754321 12 2444433 3478888878764
No 470
>TIGR01296 asd_B aspartate-semialdehyde dehydrogenase (peptidoglycan organisms). Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. This model represents a branch more closely related to the USG-1 protein than to the other aspartate-semialdehyde dehydrogenases represented in model TIGR00978.
Probab=95.74 E-value=0.019 Score=54.46 Aligned_cols=70 Identities=21% Similarity=0.398 Sum_probs=44.7
Q ss_pred EEEEEcCCCccHHHHHHHHHhCCC-ccEEEEEeCCCchhHHhhhhcccCCceEEEEecCCCHHhhhCCCCEEEEcCCC
Q 022947 48 KVAVLGAAGGIGQPLAMLMKINPL-VSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGV 124 (289)
Q Consensus 48 KI~IIGaaG~VGs~la~~L~~~g~-~~eI~LvD~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~eal~~aDiVIitag~ 124 (289)
||+|+||+|++|..++..|..+++ ..+++++......|+...+.. ..+... ..+ .++++++|+||++.|.
T Consensus 1 ~VaIvGAtG~vG~eLi~lL~~~~hp~~~l~~~as~~~~g~~~~~~~----~~~~~~--~~~-~~~~~~~D~v~~a~g~ 71 (339)
T TIGR01296 1 NVAIVGATGAVGQEMLKILEERNFPIDKLVLLASDRSAGRKVTFKG----KELEVN--EAK-IESFEGIDIALFSAGG 71 (339)
T ss_pred CEEEEcCCCHHHHHHHHHHHhCCCChhhEEEEeccccCCCeeeeCC----eeEEEE--eCC-hHHhcCCCEEEECCCH
Confidence 699999999999999998887543 346666655443333332221 122221 112 2567999999999763
No 471
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=95.73 E-value=0.09 Score=41.09 Aligned_cols=93 Identities=17% Similarity=0.200 Sum_probs=55.1
Q ss_pred EEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchhHHhhhhcccCCceEEEEecCCC---H-HhhhCCCCEEEEcCCC
Q 022947 49 VAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQ---L-EDALTGMDIVIIPAGV 124 (289)
Q Consensus 49 I~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g~~~DL~~~~~~~~v~~~~~t~d---~-~eal~~aDiVIitag~ 124 (289)
|.|+|. |.+|..++..|...+. +++++|.++.. ...+.... ..-+.+ ..++ + +..+.+||.||++.+
T Consensus 1 vvI~G~-g~~~~~i~~~L~~~~~--~vvvid~d~~~--~~~~~~~~-~~~i~g--d~~~~~~l~~a~i~~a~~vv~~~~- 71 (116)
T PF02254_consen 1 VVIIGY-GRIGREIAEQLKEGGI--DVVVIDRDPER--VEELREEG-VEVIYG--DATDPEVLERAGIEKADAVVILTD- 71 (116)
T ss_dssp EEEES--SHHHHHHHHHHHHTTS--EEEEEESSHHH--HHHHHHTT-SEEEES---TTSHHHHHHTTGGCESEEEEESS-
T ss_pred eEEEcC-CHHHHHHHHHHHhCCC--EEEEEECCcHH--HHHHHhcc-cccccc--cchhhhHHhhcCccccCEEEEccC-
Confidence 679998 9999999999998764 89999998621 12122211 011111 1112 1 123689999988743
Q ss_pred CCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecC
Q 022947 125 PRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISN 164 (289)
Q Consensus 125 ~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~aiviv~tN 164 (289)
|-..-..++..+++..|+..++...+
T Consensus 72 --------------~d~~n~~~~~~~r~~~~~~~ii~~~~ 97 (116)
T PF02254_consen 72 --------------DDEENLLIALLARELNPDIRIIARVN 97 (116)
T ss_dssp --------------SHHHHHHHHHHHHHHTTTSEEEEEES
T ss_pred --------------CHHHHHHHHHHHHHHCCCCeEEEEEC
Confidence 11223345566677788777666544
No 472
>PRK07340 ornithine cyclodeaminase; Validated
Probab=95.69 E-value=0.046 Score=50.99 Aligned_cols=71 Identities=13% Similarity=0.153 Sum_probs=49.1
Q ss_pred CCCEEEEEcCCCccHHHHHHHHHh-CCCccEEEEEeCCCc--hhHHhhhhcccCCceEEEEecCCCHHhhhCCCCEEEEc
Q 022947 45 PGFKVAVLGAAGGIGQPLAMLMKI-NPLVSVLHLYDVVNT--PGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIP 121 (289)
Q Consensus 45 ~~~KI~IIGaaG~VGs~la~~L~~-~g~~~eI~LvD~~~~--~g~~~DL~~~~~~~~v~~~~~t~d~~eal~~aDiVIit 121 (289)
...+|+|+|+ |..|...+..+.. .+ ..+|.++|++.. +..+.++... ...+. ..+.++++.++|+||.+
T Consensus 124 ~~~~v~IiGa-G~qa~~~~~al~~~~~-~~~v~v~~r~~~~a~~~a~~~~~~--~~~~~----~~~~~~av~~aDiVita 195 (304)
T PRK07340 124 PPGDLLLIGT-GVQARAHLEAFAAGLP-VRRVWVRGRTAASAAAFCAHARAL--GPTAE----PLDGEAIPEAVDLVVTA 195 (304)
T ss_pred CCCEEEEECC-cHHHHHHHHHHHHhCC-CCEEEEEcCCHHHHHHHHHHHHhc--CCeeE----ECCHHHHhhcCCEEEEc
Confidence 3458999998 9999999887765 45 469999999862 3333334321 11222 24577899999999987
Q ss_pred CC
Q 022947 122 AG 123 (289)
Q Consensus 122 ag 123 (289)
-.
T Consensus 196 T~ 197 (304)
T PRK07340 196 TT 197 (304)
T ss_pred cC
Confidence 43
No 473
>PLN02306 hydroxypyruvate reductase
Probab=95.69 E-value=0.074 Score=51.35 Aligned_cols=101 Identities=21% Similarity=0.275 Sum_probs=58.6
Q ss_pred CCEEEEEcCCCccHHHHHHHHH-hCCCccEEEEEeCCCchhHH---hhhhcc---cCCceEEEEecCCCHHhhhCCCCEE
Q 022947 46 GFKVAVLGAAGGIGQPLAMLMK-INPLVSVLHLYDVVNTPGVT---ADISHM---DTNAVVRGFLGQQQLEDALTGMDIV 118 (289)
Q Consensus 46 ~~KI~IIGaaG~VGs~la~~L~-~~g~~~eI~LvD~~~~~g~~---~DL~~~---~~~~~v~~~~~t~d~~eal~~aDiV 118 (289)
.++|+|||. |.||+.+|..+. .-|. +|..+|........ ..+... ........ ....++++.++.||+|
T Consensus 165 gktvGIiG~-G~IG~~vA~~l~~~fGm--~V~~~d~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~L~ell~~sDiV 240 (386)
T PLN02306 165 GQTVGVIGA-GRIGSAYARMMVEGFKM--NLIYYDLYQSTRLEKFVTAYGQFLKANGEQPVTW-KRASSMEEVLREADVI 240 (386)
T ss_pred CCEEEEECC-CHHHHHHHHHHHhcCCC--EEEEECCCCchhhhhhhhhhcccccccccccccc-cccCCHHHHHhhCCEE
Confidence 458999998 999999998875 4566 89999976421110 011100 00001110 0123688999999999
Q ss_pred EEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEec
Q 022947 119 IIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLIS 163 (289)
Q Consensus 119 Iitag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~aiviv~t 163 (289)
++..-. .+ + +-.++. .+.++...|.+++|+++
T Consensus 241 ~lh~Pl--t~-~--------T~~lin--~~~l~~MK~ga~lIN~a 272 (386)
T PLN02306 241 SLHPVL--DK-T--------TYHLIN--KERLALMKKEAVLVNAS 272 (386)
T ss_pred EEeCCC--Ch-h--------hhhhcC--HHHHHhCCCCeEEEECC
Confidence 997432 11 1 111111 13344455899999986
No 474
>PRK00045 hemA glutamyl-tRNA reductase; Reviewed
Probab=95.67 E-value=0.052 Score=52.89 Aligned_cols=106 Identities=21% Similarity=0.280 Sum_probs=64.4
Q ss_pred CCCCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchhHHhhhhcccCCceEEEEecCCCHHhhhCCCCEEEEcCC
Q 022947 44 SPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAG 123 (289)
Q Consensus 44 ~~~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~eal~~aDiVIitag 123 (289)
...++|+|+|+ |.+|..++..|...|. .+|+++|++.... .++.... ...+.. ..++.+.+.++|+||.+.|
T Consensus 180 ~~~~~vlViGa-G~iG~~~a~~L~~~G~-~~V~v~~r~~~ra--~~la~~~-g~~~~~---~~~~~~~l~~aDvVI~aT~ 251 (423)
T PRK00045 180 LSGKKVLVIGA-GEMGELVAKHLAEKGV-RKITVANRTLERA--EELAEEF-GGEAIP---LDELPEALAEADIVISSTG 251 (423)
T ss_pred ccCCEEEEECc-hHHHHHHHHHHHHCCC-CeEEEEeCCHHHH--HHHHHHc-CCcEee---HHHHHHHhccCCEEEECCC
Confidence 34579999998 9999999988887774 5899999875221 1122111 011111 1355677899999999876
Q ss_pred CCCCCCCchhhHHHhhHHHHHHHHHHHHHh-CCCcEEEEecCCCccc
Q 022947 124 VPRKPGMTRDDLFNINAGIVKTLCEGIAKC-CPKAIVNLISNPVNST 169 (289)
Q Consensus 124 ~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~-~p~aiviv~tNPvd~~ 169 (289)
.+... .+.+.++.. +..- ....+++=+++|-|+=
T Consensus 252 s~~~~---------i~~~~l~~~---~~~~~~~~~vviDla~Prdid 286 (423)
T PRK00045 252 APHPI---------IGKGMVERA---LKARRHRPLLLVDLAVPRDIE 286 (423)
T ss_pred CCCcE---------EcHHHHHHH---HhhccCCCeEEEEeCCCCCCc
Confidence 54211 011122221 1111 3467888889998774
No 475
>PRK08300 acetaldehyde dehydrogenase; Validated
Probab=95.66 E-value=0.83 Score=42.68 Aligned_cols=37 Identities=22% Similarity=0.336 Sum_probs=28.4
Q ss_pred CCCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCC
Q 022947 45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN 82 (289)
Q Consensus 45 ~~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~ 82 (289)
+++||+|||. |.+|..++..+...+.+.=+.++|+++
T Consensus 3 ~klrVAIIGt-G~IGt~hm~~l~~~~~velvAVvdid~ 39 (302)
T PRK08300 3 SKLKVAIIGS-GNIGTDLMIKILRSEHLEPGAMVGIDP 39 (302)
T ss_pred CCCeEEEEcC-cHHHHHHHHHHhcCCCcEEEEEEeCCh
Confidence 4679999997 999999887777655444456788876
No 476
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=95.65 E-value=0.11 Score=47.06 Aligned_cols=35 Identities=26% Similarity=0.420 Sum_probs=31.3
Q ss_pred CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCC
Q 022947 46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN 82 (289)
Q Consensus 46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~ 82 (289)
..||+|+|+ |.+|+.++..|+..|. .++.++|-+.
T Consensus 32 ~~~VliiG~-GglGs~va~~La~~Gv-g~i~lvD~D~ 66 (245)
T PRK05690 32 AARVLVVGL-GGLGCAASQYLAAAGV-GTLTLVDFDT 66 (245)
T ss_pred CCeEEEECC-CHHHHHHHHHHHHcCC-CEEEEEcCCE
Confidence 458999999 9999999999999995 6999999875
No 477
>smart00859 Semialdhyde_dh Semialdehyde dehydrogenase, NAD binding domain. The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase, an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.
Probab=95.63 E-value=0.14 Score=40.73 Aligned_cols=72 Identities=25% Similarity=0.314 Sum_probs=39.1
Q ss_pred EEEEEcCCCccHHHHHHHHHhCCCccEEEEE-eCCCchhHHhhhhcccCC-ceEEEEecCCCHHhhhCCCCEEEEcCC
Q 022947 48 KVAVLGAAGGIGQPLAMLMKINPLVSVLHLY-DVVNTPGVTADISHMDTN-AVVRGFLGQQQLEDALTGMDIVIIPAG 123 (289)
Q Consensus 48 KI~IIGaaG~VGs~la~~L~~~g~~~eI~Lv-D~~~~~g~~~DL~~~~~~-~~v~~~~~t~d~~eal~~aDiVIitag 123 (289)
||+|+|++|.+|..++..+...+.+ +++.+ +.++..+......+.... .....+. ..+++ ..++|+||++.+
T Consensus 1 ki~iiG~~g~~g~~~~~~l~~~~~~-~l~av~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~--~~~~DvV~~~~~ 74 (122)
T smart00859 1 KVAIVGATGYVGQELLRLLAEHPDF-EVVALAASARSAGKRVSEAGPHLKGEVVLELE-PEDFE--ELAVDIVFLALP 74 (122)
T ss_pred CEEEECCCChHHHHHHHHHhcCCCc-eEEEEEechhhcCcCHHHHCcccccccccccc-cCChh--hcCCCEEEEcCC
Confidence 6899997799999998888875433 45444 654322222211221100 0011111 12332 359999999853
No 478
>PRK07791 short chain dehydrogenase; Provisional
Probab=95.62 E-value=0.34 Score=44.21 Aligned_cols=35 Identities=31% Similarity=0.407 Sum_probs=30.7
Q ss_pred CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCC
Q 022947 46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN 82 (289)
Q Consensus 46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~ 82 (289)
.+.+.|+||++.+|..++..|+..|. +|+++|.+.
T Consensus 6 ~k~~lITGas~GIG~aia~~la~~G~--~vii~~~~~ 40 (286)
T PRK07791 6 GRVVIVTGAGGGIGRAHALAFAAEGA--RVVVNDIGV 40 (286)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCC--EEEEeeCCc
Confidence 45899999999999999999999997 889988753
No 479
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=95.59 E-value=0.1 Score=50.02 Aligned_cols=34 Identities=29% Similarity=0.548 Sum_probs=30.7
Q ss_pred CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCC
Q 022947 46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVV 81 (289)
Q Consensus 46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~ 81 (289)
..||.|+|+ |-+|+.++..|+..|. .+|.++|.+
T Consensus 135 ~~~VlvvG~-GG~Gs~ia~~La~~Gv-g~i~lvD~d 168 (376)
T PRK08762 135 EARVLLIGA-GGLGSPAALYLAAAGV-GTLGIVDHD 168 (376)
T ss_pred cCcEEEECC-CHHHHHHHHHHHHcCC-CeEEEEeCC
Confidence 458999998 9999999999999995 689999987
No 480
>PRK14179 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.59 E-value=0.041 Score=50.88 Aligned_cols=56 Identities=21% Similarity=0.374 Sum_probs=45.1
Q ss_pred CCCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchhHHhhhhcccCCceEEEEecCCCHHhhhCCCCEEEEcCCC
Q 022947 45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGV 124 (289)
Q Consensus 45 ~~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~eal~~aDiVIitag~ 124 (289)
..++|+|||.||.||..++..|+..|. .|.++. .. +.++++.+++||+||.+.|.
T Consensus 157 ~Gk~v~vIG~S~ivG~Pla~lL~~~ga--tVtv~~-------------s~----------t~~l~~~~~~ADIVI~avg~ 211 (284)
T PRK14179 157 EGKHAVVIGRSNIVGKPMAQLLLDKNA--TVTLTH-------------SR----------TRNLAEVARKADILVVAIGR 211 (284)
T ss_pred CCCEEEEECCCCcCcHHHHHHHHHCCC--EEEEEC-------------CC----------CCCHHHHHhhCCEEEEecCc
Confidence 357999999999999999999998886 776652 11 22466789999999999886
Q ss_pred C
Q 022947 125 P 125 (289)
Q Consensus 125 ~ 125 (289)
|
T Consensus 212 ~ 212 (284)
T PRK14179 212 G 212 (284)
T ss_pred c
Confidence 6
No 481
>PRK07041 short chain dehydrogenase; Provisional
Probab=95.58 E-value=0.078 Score=46.16 Aligned_cols=107 Identities=16% Similarity=0.199 Sum_probs=59.8
Q ss_pred EEcCCCccHHHHHHHHHhCCCccEEEEEeCCCc--hhHHhhhhcccCCceEEEE----ecCCCHHhhh---CCCCEEEEc
Q 022947 51 VLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTNAVVRGF----LGQQQLEDAL---TGMDIVIIP 121 (289)
Q Consensus 51 IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~--~g~~~DL~~~~~~~~v~~~----~~t~d~~eal---~~aDiVIit 121 (289)
|+||+|.+|..++..|++.|. +|+++++++. .....++.. ...+..+ ....++.+++ ...|++|..
T Consensus 2 ItGas~~iG~~~a~~l~~~G~--~v~~~~r~~~~~~~~~~~~~~---~~~~~~~~~Dl~~~~~~~~~~~~~~~id~li~~ 76 (230)
T PRK07041 2 VVGGSSGIGLALARAFAAEGA--RVTIASRSRDRLAAAARALGG---GAPVRTAALDITDEAAVDAFFAEAGPFDHVVIT 76 (230)
T ss_pred eecCCChHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHhc---CCceEEEEccCCCHHHHHHHHHhcCCCCEEEEC
Confidence 899999999999999999997 8999998752 111222221 1112211 1112233333 347999999
Q ss_pred CCCCCCC---CCc---hhhHHHhhHHHHHHHHHHHHHhCCCcEEEEec
Q 022947 122 AGVPRKP---GMT---RDDLFNINAGIVKTLCEGIAKCCPKAIVNLIS 163 (289)
Q Consensus 122 ag~~~~~---g~~---r~d~~~~N~~i~~~i~~~i~~~~p~aiviv~t 163 (289)
+|..... ..+ -.+.+..|+.....+.+ +....+.+.+++++
T Consensus 77 ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~-~~~~~~~g~iv~~s 123 (230)
T PRK07041 77 AADTPGGPVRALPLAAAQAAMDSKFWGAYRVAR-AARIAPGGSLTFVS 123 (230)
T ss_pred CCCCCCCChhhCCHHHHHHHHHHHHHHHHHHHh-hhhhcCCeEEEEEC
Confidence 9864321 111 22345566665555555 22233445555543
No 482
>PRK09730 putative NAD(P)-binding oxidoreductase; Provisional
Probab=95.58 E-value=0.11 Score=45.50 Aligned_cols=33 Identities=21% Similarity=0.295 Sum_probs=27.4
Q ss_pred CEEEEEcCCCccHHHHHHHHHhCCCccEEEEE-eCC
Q 022947 47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLY-DVV 81 (289)
Q Consensus 47 ~KI~IIGaaG~VGs~la~~L~~~g~~~eI~Lv-D~~ 81 (289)
+.+.|+||+|++|..++..|+..|. +|++. +.+
T Consensus 2 ~~~lItGa~g~iG~~l~~~l~~~g~--~v~~~~~~~ 35 (247)
T PRK09730 2 AIALVTGGSRGIGRATALLLAQEGY--TVAVNYQQN 35 (247)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCC--EEEEEeCCC
Confidence 3689999999999999999999987 77664 443
No 483
>KOG4039 consensus Serine/threonine kinase TIP30/CC3 [Signal transduction mechanisms]
Probab=95.57 E-value=0.066 Score=46.33 Aligned_cols=114 Identities=22% Similarity=0.215 Sum_probs=74.8
Q ss_pred CCCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchhHHhhhhcccCCc----eEEEEecCCCHHhhhCCCCEEEE
Q 022947 45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNA----VVRGFLGQQQLEDALTGMDIVII 120 (289)
Q Consensus 45 ~~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g~~~DL~~~~~~~----~v~~~~~t~d~~eal~~aDiVIi 120 (289)
++|...|+||+|.+|..+...++..+.++.|+++-+.+. -+..+.. ....+..-+++.+++.+-|+.|.
T Consensus 17 q~~s~fvlGAtG~~G~~llk~~~E~~~FSKV~~i~RR~~-------~d~at~k~v~q~~vDf~Kl~~~a~~~qg~dV~Fc 89 (238)
T KOG4039|consen 17 QNMSGFVLGATGLCGGGLLKHAQEAPQFSKVYAILRREL-------PDPATDKVVAQVEVDFSKLSQLATNEQGPDVLFC 89 (238)
T ss_pred hccceEEEeccccccHHHHHHHHhcccceeEEEEEeccC-------CCccccceeeeEEechHHHHHHHhhhcCCceEEE
Confidence 467889999999999999999999999999999987641 1111111 11112222456788999999999
Q ss_pred cCCCCC-CCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecCCCc
Q 022947 121 PAGVPR-KPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVN 167 (289)
Q Consensus 121 tag~~~-~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~aiviv~tNPvd 167 (289)
+-|.-| +.|-+ .+....-+.+.+.++..++.+-+-++++.|--.|
T Consensus 90 aLgTTRgkaGad--gfykvDhDyvl~~A~~AKe~Gck~fvLvSS~GAd 135 (238)
T KOG4039|consen 90 ALGTTRGKAGAD--GFYKVDHDYVLQLAQAAKEKGCKTFVLVSSAGAD 135 (238)
T ss_pred eecccccccccC--ceEeechHHHHHHHHHHHhCCCeEEEEEeccCCC
Confidence 877654 33322 1223344566677777776666777777654333
No 484
>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional
Probab=95.57 E-value=0.06 Score=44.63 Aligned_cols=55 Identities=29% Similarity=0.452 Sum_probs=44.5
Q ss_pred CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchhHHhhhhcccCCceEEEEecCCCHHhhhCCCCEEEEcCCCC
Q 022947 46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVP 125 (289)
Q Consensus 46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~eal~~aDiVIitag~~ 125 (289)
.++|.|+|.+..+|..++..|..++. .+.+++.+ +.++++++++||+||.+.|.+
T Consensus 28 gk~v~VvGrs~~vG~pla~lL~~~ga--tV~~~~~~-----------------------t~~l~~~v~~ADIVvsAtg~~ 82 (140)
T cd05212 28 GKKVLVVGRSGIVGAPLQCLLQRDGA--TVYSCDWK-----------------------TIQLQSKVHDADVVVVGSPKP 82 (140)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCC--EEEEeCCC-----------------------CcCHHHHHhhCCEEEEecCCC
Confidence 45999999999999999999988876 77777532 124668899999999998865
No 485
>TIGR01500 sepiapter_red sepiapterin reductase. This model describes sepiapterin reductase, a member of the short chain dehydrogenase/reductase family. The enzyme catalyzes the last step in the biosynthesis of tetrahydrobiopterin. A similar enzyme in Bacillus cereus was isolated for its ability to convert benzil to (S)-benzoin, a property sepiapterin reductase also shares. Cutoff scores for this model are set such that benzil reductase scores between trusted and noise cutoffs.
Probab=95.57 E-value=0.24 Score=44.17 Aligned_cols=33 Identities=27% Similarity=0.268 Sum_probs=28.2
Q ss_pred EEEEEcCCCccHHHHHHHHHh----CCCccEEEEEeCCC
Q 022947 48 KVAVLGAAGGIGQPLAMLMKI----NPLVSVLHLYDVVN 82 (289)
Q Consensus 48 KI~IIGaaG~VGs~la~~L~~----~g~~~eI~LvD~~~ 82 (289)
.+.|+||++.+|..++..|+. .|. .|++.++++
T Consensus 2 ~vlItGas~GIG~~~a~~la~~~~~~g~--~V~~~~r~~ 38 (256)
T TIGR01500 2 VCLVTGASRGFGRTIAQELAKCLKSPGS--VLVLSARND 38 (256)
T ss_pred EEEEecCCCchHHHHHHHHHHhhccCCc--EEEEEEcCH
Confidence 478999999999999998886 565 899999876
No 486
>TIGR01289 LPOR light-dependent protochlorophyllide reductase. This model represents the light-dependent, NADPH-dependent form of protochlorophyllide reductase. It belongs to the short chain alcohol dehydrogenase family, in contrast to the nitrogenase-related light-independent form.
Probab=95.54 E-value=0.1 Score=48.39 Aligned_cols=115 Identities=10% Similarity=0.024 Sum_probs=65.0
Q ss_pred CCEEEEEcCCCccHHHHHHHHHhCC-CccEEEEEeCCCch--hHHhhhhcccCCceEEEEe-cCCC---HHhh-------
Q 022947 46 GFKVAVLGAAGGIGQPLAMLMKINP-LVSVLHLYDVVNTP--GVTADISHMDTNAVVRGFL-GQQQ---LEDA------- 111 (289)
Q Consensus 46 ~~KI~IIGaaG~VGs~la~~L~~~g-~~~eI~LvD~~~~~--g~~~DL~~~~~~~~v~~~~-~t~d---~~ea------- 111 (289)
.+.+.|+||++.+|..++..|+..| . .|++.++++.. ....++... ...+..+. +-++ .++.
T Consensus 3 ~k~vlITGas~GIG~aia~~L~~~G~~--~V~l~~r~~~~~~~~~~~l~~~--~~~~~~~~~Dl~~~~~v~~~~~~~~~~ 78 (314)
T TIGR01289 3 KPTVIITGASSGLGLYAAKALAATGEW--HVIMACRDFLKAEQAAKSLGMP--KDSYTIMHLDLGSLDSVRQFVQQFRES 78 (314)
T ss_pred CCEEEEECCCChHHHHHHHHHHHcCCC--EEEEEeCCHHHHHHHHHHhcCC--CCeEEEEEcCCCCHHHHHHHHHHHHHh
Confidence 3478999999999999999999988 6 89999887621 112222211 11121110 1111 1111
Q ss_pred hCCCCEEEEcCCCCCCC----CCch---hhHHHhhHH----HHHHHHHHHHHhCC-CcEEEEecC
Q 022947 112 LTGMDIVIIPAGVPRKP----GMTR---DDLFNINAG----IVKTLCEGIAKCCP-KAIVNLISN 164 (289)
Q Consensus 112 l~~aDiVIitag~~~~~----g~~r---~d~~~~N~~----i~~~i~~~i~~~~p-~aiviv~tN 164 (289)
+...|++|..||..... ..+. ...+..|+. +++.+.+.+++... .+.|+++|.
T Consensus 79 ~~~iD~lI~nAG~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~l~~m~~~~~~~g~IV~vsS 143 (314)
T TIGR01289 79 GRPLDALVCNAAVYFPTAKEPRFTADGFELSVGTNHLGHFLLCNLLLDDLKNSPNKDKRLIIVGS 143 (314)
T ss_pred CCCCCEEEECCCccccCccccccCHHHHHHHHhhhhhHHHHHHHHHHHHHHhCCCCCCeEEEEec
Confidence 24689999999964221 1121 223455543 45666666665432 356666653
No 487
>TIGR02992 ectoine_eutC ectoine utilization protein EutC. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. This family belongs to the ornithine cyclodeaminase/mu-crystallin family (pfam02423).
Probab=95.52 E-value=0.06 Score=50.64 Aligned_cols=73 Identities=15% Similarity=0.205 Sum_probs=49.0
Q ss_pred CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCc--hhHHhhhhcccCCceEEEEecCCCHHhhhCCCCEEEEcCC
Q 022947 46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAG 123 (289)
Q Consensus 46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~--~g~~~DL~~~~~~~~v~~~~~t~d~~eal~~aDiVIitag 123 (289)
..+++|||+ |..+...+..|.....+.+|.+++++.. +..+.++.+.. ...+.. .+++++++++||+||.+-.
T Consensus 129 ~~~v~iiGa-G~qA~~~~~al~~~~~i~~v~V~~R~~~~a~~~a~~~~~~~-g~~v~~---~~~~~~av~~aDiVvtaT~ 203 (326)
T TIGR02992 129 SSVVAIFGA-GMQARLQLEALTLVRDIRSARIWARDSAKAEALALQLSSLL-GIDVTA---ATDPRAAMSGADIIVTTTP 203 (326)
T ss_pred CcEEEEECC-CHHHHHHHHHHHHhCCccEEEEECCCHHHHHHHHHHHHhhc-CceEEE---eCCHHHHhccCCEEEEecC
Confidence 358999998 9999988887764333578999999863 33333343211 122222 2467889999999998743
No 488
>PRK06141 ornithine cyclodeaminase; Validated
Probab=95.48 E-value=0.065 Score=50.15 Aligned_cols=71 Identities=17% Similarity=0.266 Sum_probs=47.4
Q ss_pred CCCEEEEEcCCCccHHHHHHHHHh-CCCccEEEEEeCCCc--hhHHhhhhcccCCceEEEEecCCCHHhhhCCCCEEEEc
Q 022947 45 PGFKVAVLGAAGGIGQPLAMLMKI-NPLVSVLHLYDVVNT--PGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIP 121 (289)
Q Consensus 45 ~~~KI~IIGaaG~VGs~la~~L~~-~g~~~eI~LvD~~~~--~g~~~DL~~~~~~~~v~~~~~t~d~~eal~~aDiVIit 121 (289)
...+|+|||+ |.+|...+..+.. .+ ..+|.++++++. +..+.++.+. ...+.. ..+.++++++||+|+.+
T Consensus 124 ~~~~v~iiG~-G~~a~~~~~al~~~~~-~~~V~V~~Rs~~~a~~~a~~~~~~--g~~~~~---~~~~~~av~~aDIVi~a 196 (314)
T PRK06141 124 DASRLLVVGT-GRLASLLALAHASVRP-IKQVRVWGRDPAKAEALAAELRAQ--GFDAEV---VTDLEAAVRQADIISCA 196 (314)
T ss_pred CCceEEEECC-cHHHHHHHHHHHhcCC-CCEEEEEcCCHHHHHHHHHHHHhc--CCceEE---eCCHHHHHhcCCEEEEe
Confidence 3568999998 9999999875554 44 569999998762 3333333321 112332 24567889999999665
Q ss_pred C
Q 022947 122 A 122 (289)
Q Consensus 122 a 122 (289)
.
T Consensus 197 T 197 (314)
T PRK06141 197 T 197 (314)
T ss_pred e
Confidence 3
No 489
>TIGR03443 alpha_am_amid L-aminoadipate-semialdehyde dehydrogenase. Members of this protein family are L-aminoadipate-semialdehyde dehydrogenase (EC 1.2.1.31), product of the LYS2 gene. It is also called alpha-aminoadipate reductase. In fungi, lysine is synthesized via aminoadipate. Currently, all members of this family are fungal.
Probab=95.44 E-value=0.18 Score=55.85 Aligned_cols=117 Identities=13% Similarity=0.039 Sum_probs=69.1
Q ss_pred CCEEEEEcCCCccHHHHHHHHHhCC--CccEEEEEeCCCchhH-Hhhhhcc---------cCCceEEEEec---------
Q 022947 46 GFKVAVLGAAGGIGQPLAMLMKINP--LVSVLHLYDVVNTPGV-TADISHM---------DTNAVVRGFLG--------- 104 (289)
Q Consensus 46 ~~KI~IIGaaG~VGs~la~~L~~~g--~~~eI~LvD~~~~~g~-~~DL~~~---------~~~~~v~~~~~--------- 104 (289)
.++|.|+|++|++|++++..|+..+ ...+|++..+...... ...+.+. ....++..+.+
T Consensus 971 ~~~VlvTGatGflG~~l~~~Ll~~~~~~~~~V~~l~R~~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~gDl~~~~lgl 1050 (1389)
T TIGR03443 971 PITVFLTGATGFLGSFILRDLLTRRSNSNFKVFAHVRAKSEEAGLERLRKTGTTYGIWDEEWASRIEVVLGDLSKEKFGL 1050 (1389)
T ss_pred CceEEEeCCccccHHHHHHHHHhcCCCCCcEEEEEECcCChHHHHHHHHHHHHHhCCCchhhhcceEEEeccCCCccCCc
Confidence 5799999999999999998888766 3336776666541111 1111110 00012332211
Q ss_pred -CCCHHhhhCCCCEEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEec
Q 022947 105 -QQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLIS 163 (289)
Q Consensus 105 -t~d~~eal~~aDiVIitag~~~~~g~~r~d~~~~N~~i~~~i~~~i~~~~p~aiviv~t 163 (289)
...+.+...++|+||++|+... ......++...|+...+++++...+.....++.+.|
T Consensus 1051 ~~~~~~~l~~~~d~iiH~Aa~~~-~~~~~~~~~~~nv~gt~~ll~~a~~~~~~~~v~vSS 1109 (1389)
T TIGR03443 1051 SDEKWSDLTNEVDVIIHNGALVH-WVYPYSKLRDANVIGTINVLNLCAEGKAKQFSFVSS 1109 (1389)
T ss_pred CHHHHHHHHhcCCEEEECCcEec-CccCHHHHHHhHHHHHHHHHHHHHhCCCceEEEEeC
Confidence 1124455678999999987542 222334444569999999999887765444444434
No 490
>PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases. As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A ....
Probab=95.43 E-value=0.13 Score=42.24 Aligned_cols=116 Identities=18% Similarity=0.178 Sum_probs=70.4
Q ss_pred EEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCC----chhHHhhhhcccCCceEEEEec-CCC----------HHhhh
Q 022947 48 KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN----TPGVTADISHMDTNAVVRGFLG-QQQ----------LEDAL 112 (289)
Q Consensus 48 KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~----~~g~~~DL~~~~~~~~v~~~~~-t~d----------~~eal 112 (289)
.+.|+||+|-+|..++..|+..|- ..|+++++++ ......++... ..++..+.. ..+ ..+..
T Consensus 2 ~~lItGa~~giG~~~a~~l~~~g~-~~v~~~~r~~~~~~~~~l~~~l~~~--~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 78 (167)
T PF00106_consen 2 TVLITGASSGIGRALARALARRGA-RVVILTSRSEDSEGAQELIQELKAP--GAKITFIECDLSDPESIRALIEEVIKRF 78 (167)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTTT-EEEEEEESSCHHHHHHHHHHHHHHT--TSEEEEEESETTSHHHHHHHHHHHHHHH
T ss_pred EEEEECCCCHHHHHHHHHHHhcCc-eEEEEeeeccccccccccccccccc--cccccccccccccccccccccccccccc
Confidence 688999999999999999998852 4789998872 11122223321 122332210 111 11234
Q ss_pred CCCCEEEEcCCCCCCCCC---c---hhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecCCCc
Q 022947 113 TGMDIVIIPAGVPRKPGM---T---RDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVN 167 (289)
Q Consensus 113 ~~aDiVIitag~~~~~g~---~---r~d~~~~N~~i~~~i~~~i~~~~p~aiviv~tNPvd 167 (289)
...|++|.++|....... + -.+.+..|+.....+.+.+.. .+.+.|+++|....
T Consensus 79 ~~ld~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~-~~~g~iv~~sS~~~ 138 (167)
T PF00106_consen 79 GPLDILINNAGIFSDGSLDDLSEEELERVFRVNLFGPFLLAKALLP-QGGGKIVNISSIAG 138 (167)
T ss_dssp SSESEEEEECSCTTSBSGGGSHHHHHHHHHHHHTHHHHHHHHHHHH-HTTEEEEEEEEGGG
T ss_pred ccccccccccccccccccccccchhhhhccccccceeeeeeehhee-ccccceEEecchhh
Confidence 589999999998652211 1 123566676666666666666 55788888775543
No 491
>PRK07589 ornithine cyclodeaminase; Validated
Probab=95.43 E-value=0.06 Score=51.22 Aligned_cols=71 Identities=18% Similarity=0.287 Sum_probs=49.4
Q ss_pred CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCC--chhHHhhhhcccCCceEEEEecCCCHHhhhCCCCEEEEcC
Q 022947 46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPA 122 (289)
Q Consensus 46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~--~~g~~~DL~~~~~~~~v~~~~~t~d~~eal~~aDiVIita 122 (289)
..+++|||+ |..+...+..+..-..+.+|.++|++. .+..+.++.+. ..++.. .++.++++++||+|+.+-
T Consensus 129 a~~l~iiGa-G~QA~~~l~a~~~vr~i~~V~v~~r~~~~a~~~~~~~~~~--~~~v~~---~~~~~~av~~ADIIvtaT 201 (346)
T PRK07589 129 SRTMALIGN-GAQSEFQALAFKALLGIEEIRLYDIDPAATAKLARNLAGP--GLRIVA---CRSVAEAVEGADIITTVT 201 (346)
T ss_pred CcEEEEECC-cHHHHHHHHHHHHhCCceEEEEEeCCHHHHHHHHHHHHhc--CCcEEE---eCCHHHHHhcCCEEEEec
Confidence 458999998 999988776555433468999999987 23344444431 123333 246889999999999864
No 492
>PRK13301 putative L-aspartate dehydrogenase; Provisional
Probab=95.42 E-value=0.13 Score=47.18 Aligned_cols=67 Identities=18% Similarity=0.190 Sum_probs=40.1
Q ss_pred CCEEEEEcCCCccHHHHHHHHHhCCC-ccEEE-EEeCCCchhHHhhhhcccCCceEEEEecCCCHHhh-hCCCCEEEEcC
Q 022947 46 GFKVAVLGAAGGIGQPLAMLMKINPL-VSVLH-LYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDA-LTGMDIVIIPA 122 (289)
Q Consensus 46 ~~KI~IIGaaG~VGs~la~~L~~~g~-~~eI~-LvD~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~ea-l~~aDiVIita 122 (289)
.+||+|||. |.+|..++..|..... .-+++ ++|.+. ....++... +. . .+++++- ....|+||.||
T Consensus 2 ~~rvgiIG~-GaIG~~va~~l~~~~~~~~~l~~V~~~~~--~~~~~~~~~---~~--~---~~~l~~ll~~~~DlVVE~A 70 (267)
T PRK13301 2 THRIAFIGL-GAIASDVAAGLLADAAQPCQLAALTRNAA--DLPPALAGR---VA--L---LDGLPGLLAWRPDLVVEAA 70 (267)
T ss_pred ceEEEEECc-cHHHHHHHHHHhcCCCCceEEEEEecCCH--HHHHHhhcc---Cc--c---cCCHHHHhhcCCCEEEECC
Confidence 469999998 9999999988865432 11443 344432 122222221 11 1 1356442 37899999998
Q ss_pred C
Q 022947 123 G 123 (289)
Q Consensus 123 g 123 (289)
+
T Consensus 71 ~ 71 (267)
T PRK13301 71 G 71 (267)
T ss_pred C
Confidence 6
No 493
>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.42 E-value=0.055 Score=50.13 Aligned_cols=57 Identities=19% Similarity=0.382 Sum_probs=44.6
Q ss_pred CCCCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchhHHhhhhcccCCceEEEEecCCCHHhhhCCCCEEEEcCC
Q 022947 44 SPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAG 123 (289)
Q Consensus 44 ~~~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~eal~~aDiVIitag 123 (289)
-+.++|+|||.++.||..++..|...+- .|..++.. |.++++.+++||+||.+.|
T Consensus 156 l~Gk~vvVIGrs~~VG~pla~lL~~~ga--tVtv~~s~-----------------------t~~l~~~~~~ADIVIsAvg 210 (286)
T PRK14175 156 LEGKNAVVIGRSHIVGQPVSKLLLQKNA--SVTILHSR-----------------------SKDMASYLKDADVIVSAVG 210 (286)
T ss_pred CCCCEEEEECCCchhHHHHHHHHHHCCC--eEEEEeCC-----------------------chhHHHHHhhCCEEEECCC
Confidence 3467999999955599999999988875 77766531 1256688999999999988
Q ss_pred CC
Q 022947 124 VP 125 (289)
Q Consensus 124 ~~ 125 (289)
.|
T Consensus 211 ~p 212 (286)
T PRK14175 211 KP 212 (286)
T ss_pred CC
Confidence 76
No 494
>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.41 E-value=0.05 Score=50.35 Aligned_cols=55 Identities=24% Similarity=0.436 Sum_probs=43.1
Q ss_pred CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchhHHhhhhcccCCceEEEEecCCCHHhhhCCCCEEEEcCCCC
Q 022947 46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVP 125 (289)
Q Consensus 46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~eal~~aDiVIitag~~ 125 (289)
.++|+|+|++|.+|..+++.|+..+. +|.+++.. +.++.+.+++||+||.+.|.|
T Consensus 159 Gk~vvViG~gg~vGkpia~~L~~~ga--tVtv~~~~-----------------------t~~L~~~~~~aDIvI~AtG~~ 213 (283)
T PRK14192 159 GKHAVVVGRSAILGKPMAMMLLNANA--TVTICHSR-----------------------TQNLPELVKQADIIVGAVGKP 213 (283)
T ss_pred CCEEEEECCcHHHHHHHHHHHHhCCC--EEEEEeCC-----------------------chhHHHHhccCCEEEEccCCC
Confidence 57999999944599999999988885 88887531 124567789999999998744
No 495
>KOG0409 consensus Predicted dehydrogenase [General function prediction only]
Probab=95.40 E-value=0.051 Score=50.44 Aligned_cols=96 Identities=17% Similarity=0.293 Sum_probs=65.4
Q ss_pred CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchhHHhhhhcccCCceEEEEecCCCHHhhhCCCCEEEEcCCCC
Q 022947 46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVP 125 (289)
Q Consensus 46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~eal~~aDiVIitag~~ 125 (289)
.++|+.||- |.+|++.+..|+..|+ .|+.||++. .+..++.... .++. ..+.|..++||+||.+.+.|
T Consensus 35 ~~~iGFIGL-G~MG~~M~~nLik~G~--kVtV~dr~~--~k~~~f~~~G--a~v~-----~sPaeVae~sDvvitmv~~~ 102 (327)
T KOG0409|consen 35 KTRIGFIGL-GNMGSAMVSNLIKAGY--KVTVYDRTK--DKCKEFQEAG--ARVA-----NSPAEVAEDSDVVITMVPNP 102 (327)
T ss_pred cceeeEEee-ccchHHHHHHHHHcCC--EEEEEeCcH--HHHHHHHHhc--hhhh-----CCHHHHHhhcCEEEEEcCCh
Confidence 569999998 9999999999999999 999999874 3344555543 2222 24568899999999987644
Q ss_pred CC----------------CCCch-hhHHHhhHHHHHHHHHHHHHh
Q 022947 126 RK----------------PGMTR-DDLFNINAGIVKTLCEGIAKC 153 (289)
Q Consensus 126 ~~----------------~g~~r-~d~~~~N~~i~~~i~~~i~~~ 153 (289)
.. +|..- .|.-...-...+++.+.+..-
T Consensus 103 ~~v~~v~~g~~Gvl~g~~~g~~~~vDmSTidp~~s~ei~~~i~~~ 147 (327)
T KOG0409|consen 103 KDVKDVLLGKSGVLSGIRPGKKATVDMSTIDPDTSLEIAKAISNK 147 (327)
T ss_pred HhhHHHhcCCCcceeeccCCCceEEeccccCHHHHHHHHHHHHhC
Confidence 21 12111 233333445667777777643
No 496
>PRK08223 hypothetical protein; Validated
Probab=95.35 E-value=0.078 Score=49.12 Aligned_cols=35 Identities=20% Similarity=0.287 Sum_probs=31.4
Q ss_pred CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCC
Q 022947 46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN 82 (289)
Q Consensus 46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~ 82 (289)
..||.|+|+ |-+|+.++..|+..|+ .+|.|+|-+.
T Consensus 27 ~s~VlIvG~-GGLGs~va~~LA~aGV-G~i~lvD~D~ 61 (287)
T PRK08223 27 NSRVAIAGL-GGVGGIHLLTLARLGI-GKFTIADFDV 61 (287)
T ss_pred cCCEEEECC-CHHHHHHHHHHHHhCC-CeEEEEeCCC
Confidence 458999999 9999999999999996 5999999875
No 497
>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....
Probab=95.32 E-value=0.049 Score=46.27 Aligned_cols=66 Identities=24% Similarity=0.315 Sum_probs=42.2
Q ss_pred CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchhHHhhhhcccCCceEEEEecCCCHHhhhCCCCEEEEcCCC
Q 022947 46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGV 124 (289)
Q Consensus 46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~eal~~aDiVIitag~ 124 (289)
.+++.|+|- |.+|..+|..|...|. .|..+|+++...... ..+. ..+. .++++++.+|++|.+-|.
T Consensus 23 Gk~vvV~GY-G~vG~g~A~~lr~~Ga--~V~V~e~DPi~alqA-~~dG---f~v~------~~~~a~~~adi~vtaTG~ 88 (162)
T PF00670_consen 23 GKRVVVIGY-GKVGKGIARALRGLGA--RVTVTEIDPIRALQA-AMDG---FEVM------TLEEALRDADIFVTATGN 88 (162)
T ss_dssp TSEEEEE---SHHHHHHHHHHHHTT---EEEEE-SSHHHHHHH-HHTT----EEE-------HHHHTTT-SEEEE-SSS
T ss_pred CCEEEEeCC-CcccHHHHHHHhhCCC--EEEEEECChHHHHHh-hhcC---cEec------CHHHHHhhCCEEEECCCC
Confidence 358999999 9999999999998886 999999988221111 1121 1222 357899999998887653
No 498
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=95.30 E-value=0.25 Score=41.63 Aligned_cols=66 Identities=11% Similarity=0.089 Sum_probs=43.2
Q ss_pred CCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchhHHhhhhcccCCceEEEEecCCCHHhhhCCCCEEEEcC
Q 022947 46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPA 122 (289)
Q Consensus 46 ~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~eal~~aDiVIita 122 (289)
.+||.|||+ |.||...+..|+..|. +|++++..... ...++.. ..+. ...-. ++.+.++|+||.+.
T Consensus 13 ~~~vlVvGG-G~va~rka~~Ll~~ga--~V~VIsp~~~~-~l~~l~~----i~~~--~~~~~-~~dl~~a~lViaaT 78 (157)
T PRK06719 13 NKVVVIIGG-GKIAYRKASGLKDTGA--FVTVVSPEICK-EMKELPY----ITWK--QKTFS-NDDIKDAHLIYAAT 78 (157)
T ss_pred CCEEEEECC-CHHHHHHHHHHHhCCC--EEEEEcCccCH-HHHhccC----cEEE--ecccC-hhcCCCceEEEECC
Confidence 358999999 9999999999999887 89999643221 2222211 1111 11111 35689999999873
No 499
>PRK06901 aspartate-semialdehyde dehydrogenase; Provisional
Probab=95.30 E-value=0.021 Score=53.58 Aligned_cols=69 Identities=13% Similarity=0.204 Sum_probs=48.0
Q ss_pred CCEEEEEcCCCccHHHHHHHHHhCCC-ccEEEEEeCC-CchhHHhhhhcccCCceEEEEecCCCHHhhhCCCCEEEEcCC
Q 022947 46 GFKVAVLGAAGGIGQPLAMLMKINPL-VSVLHLYDVV-NTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAG 123 (289)
Q Consensus 46 ~~KI~IIGaaG~VGs~la~~L~~~g~-~~eI~LvD~~-~~~g~~~DL~~~~~~~~v~~~~~t~d~~eal~~aDiVIitag 123 (289)
.++|+| ||+|.||..+...|.++++ .+++.|++.. ...|+...+.. ..+....-+ ++++++.|++|+ +|
T Consensus 3 ~~~iAi-GATg~VG~~~l~~Leer~fpv~~l~l~~s~~~s~gk~i~f~g----~~~~V~~l~---~~~f~~vDia~f-ag 73 (322)
T PRK06901 3 TLNIAI-AAEFELSEKLLEALEQSDLEIEQISIVEIEPFGEEQGIRFNN----KAVEQIAPE---EVEWADFNYVFF-AG 73 (322)
T ss_pred cceEEE-ecCcHHHHHHHHHHHhcCCchhheeecccccccCCCEEEECC----EEEEEEECC---ccCcccCCEEEE-cC
Confidence 468999 9999999999999988874 6889999876 44443333321 223322111 256899999999 65
No 500
>PRK14173 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.29 E-value=0.065 Score=49.64 Aligned_cols=56 Identities=27% Similarity=0.451 Sum_probs=44.5
Q ss_pred CCCEEEEEcCCCccHHHHHHHHHhCCCccEEEEEeCCCchhHHhhhhcccCCceEEEEecCCCHHhhhCCCCEEEEcCCC
Q 022947 45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGV 124 (289)
Q Consensus 45 ~~~KI~IIGaaG~VGs~la~~L~~~g~~~eI~LvD~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~eal~~aDiVIitag~ 124 (289)
..++|+|||.|..||..++.+|..++- .|.+.. . .|.|+++.++.||+||.++|.
T Consensus 154 ~Gk~vvViGrS~iVGkPla~lL~~~~a--TVtich-------------s----------~T~~l~~~~~~ADIvIsAvGk 208 (287)
T PRK14173 154 AGKEVVVVGRSNIVGKPLAALLLREDA--TVTLAH-------------S----------KTQDLPAVTRRADVLVVAVGR 208 (287)
T ss_pred CCCEEEEECCCCccHHHHHHHHHHCCC--EEEEeC-------------C----------CCCCHHHHHhhCCEEEEecCC
Confidence 357999999999999999999987774 555542 1 134677889999999999987
Q ss_pred C
Q 022947 125 P 125 (289)
Q Consensus 125 ~ 125 (289)
|
T Consensus 209 p 209 (287)
T PRK14173 209 P 209 (287)
T ss_pred c
Confidence 6
Done!