Query 022948
Match_columns 289
No_of_seqs 119 out of 1345
Neff 7.6
Searched_HMMs 46136
Date Fri Mar 29 07:19:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022948.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/022948hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd03089 PMM_PGM The phosphoman 100.0 2.4E-54 5.1E-59 416.9 28.7 241 1-288 200-441 (443)
2 PRK09542 manB phosphomannomuta 100.0 1.3E-53 2.8E-58 411.9 28.8 240 1-288 201-440 (445)
3 PLN02371 phosphoglucosamine mu 100.0 4.1E-52 8.9E-57 412.3 29.4 256 1-288 301-564 (583)
4 cd05800 PGM_like2 This PGM-lik 100.0 4.4E-52 9.6E-57 403.0 27.9 248 1-288 210-459 (461)
5 PRK14321 glmM phosphoglucosami 100.0 1.1E-51 2.3E-56 398.9 27.4 238 2-288 203-440 (449)
6 PRK15414 phosphomannomutase Cp 100.0 1.4E-51 2.9E-56 398.8 26.8 240 1-288 212-452 (456)
7 cd05803 PGM_like4 This PGM-lik 100.0 2.8E-51 6E-56 395.7 28.8 234 1-286 210-444 (445)
8 cd03087 PGM_like1 This archaea 100.0 2.8E-51 6.1E-56 395.1 28.0 238 1-289 201-438 (439)
9 cd05805 MPG1_transferase GTP-m 100.0 5.6E-51 1.2E-55 393.2 27.4 232 6-289 209-440 (441)
10 PTZ00150 phosphoglucomutase-2- 100.0 2.7E-49 5.9E-54 392.6 27.9 261 1-274 268-548 (584)
11 cd05801 PGM_like3 This bacteri 100.0 3.2E-49 7E-54 387.8 26.7 254 1-288 247-520 (522)
12 cd03085 PGM1 Phosphoglucomutas 100.0 7.4E-49 1.6E-53 386.2 27.1 251 1-278 246-511 (548)
13 PRK07564 phosphoglucomutase; V 100.0 1.7E-48 3.6E-53 384.2 26.3 252 2-288 272-535 (543)
14 COG1109 {ManB} Phosphomannomut 100.0 1E-47 2.2E-52 372.5 27.8 238 1-287 215-454 (464)
15 TIGR01132 pgm phosphoglucomuta 100.0 3.1E-47 6.6E-52 375.3 27.2 253 1-288 264-536 (543)
16 cd05799 PGM2 This CD includes 100.0 7.8E-47 1.7E-51 368.6 28.4 241 1-285 226-484 (487)
17 PRK10887 glmM phosphoglucosami 100.0 8E-47 1.7E-51 364.5 25.7 221 12-288 216-437 (443)
18 cd03088 ManB ManB is a bacteri 100.0 9.8E-47 2.1E-51 365.3 25.4 245 2-285 201-457 (459)
19 PRK14317 glmM phosphoglucosami 100.0 3.9E-46 8.5E-51 361.6 26.3 226 6-288 228-458 (465)
20 PRK14315 glmM phosphoglucosami 100.0 5.6E-47 1.2E-51 366.0 20.0 219 12-288 221-441 (448)
21 PLN02307 phosphoglucomutase 100.0 9.1E-46 2E-50 365.3 27.0 263 1-287 263-554 (579)
22 cd03084 phosphohexomutase The 100.0 9.4E-46 2E-50 347.7 24.6 204 1-288 149-353 (355)
23 PRK14316 glmM phosphoglucosami 100.0 3.9E-46 8.4E-51 360.2 21.5 219 13-288 219-439 (448)
24 cd05802 GlmM GlmM is a bacteri 100.0 6.9E-46 1.5E-50 357.2 23.1 218 12-286 214-433 (434)
25 PRK14324 glmM phosphoglucosami 100.0 2.3E-45 5E-50 354.5 25.4 217 12-288 220-438 (446)
26 PRK14314 glmM phosphoglucosami 100.0 2.3E-45 5E-50 355.0 23.7 220 12-288 222-443 (450)
27 PRK14322 glmM phosphoglucosami 100.0 6E-45 1.3E-49 350.1 25.1 214 12-288 210-425 (429)
28 TIGR01455 glmM phosphoglucosam 100.0 3.4E-45 7.3E-50 353.2 23.5 221 12-288 217-439 (443)
29 PRK14320 glmM phosphoglucosami 100.0 6E-45 1.3E-49 351.4 23.9 220 12-288 217-436 (443)
30 PRK14323 glmM phosphoglucosami 100.0 3.6E-45 7.8E-50 352.7 21.8 216 12-288 218-433 (440)
31 PRK14318 glmM phosphoglucosami 100.0 2.4E-44 5.2E-49 347.7 21.1 218 12-288 220-441 (448)
32 PRK14319 glmM phosphoglucosami 100.0 1E-43 2.2E-48 341.7 23.1 212 12-288 207-420 (430)
33 cd03086 PGM3 PGM3 (phosphogluc 100.0 1.6E-42 3.4E-47 338.3 22.7 235 5-288 228-511 (513)
34 KOG1220 Phosphoglucomutase/pho 100.0 1.6E-41 3.5E-46 322.8 17.4 266 1-281 287-576 (607)
35 PTZ00302 N-acetylglucosamine-p 100.0 1.5E-37 3.3E-42 305.3 23.7 230 5-288 287-576 (585)
36 PLN02895 phosphoacetylglucosam 100.0 2.6E-37 5.6E-42 301.8 21.4 226 5-288 252-549 (562)
37 COG0033 Pgm Phosphoglucomutase 99.9 1.1E-27 2.3E-32 222.1 12.6 257 1-287 243-513 (524)
38 KOG0625 Phosphoglucomutase [Ca 99.9 7.6E-26 1.7E-30 208.0 19.5 251 1-277 252-520 (558)
39 PF02880 PGM_PMM_III: Phosphog 99.9 2.1E-26 4.4E-31 182.6 11.2 112 51-172 1-113 (113)
40 KOG2537 Phosphoglucomutase/pho 99.7 3.8E-16 8.2E-21 147.7 12.6 203 29-287 279-532 (539)
41 PF00408 PGM_PMM_IV: Phosphogl 99.4 2.2E-13 4.8E-18 99.5 5.3 46 237-288 24-70 (73)
42 PF02879 PGM_PMM_II: Phosphogl 99.1 8.5E-11 1.8E-15 91.4 5.3 46 1-47 58-104 (104)
43 COG1979 Uncharacterized oxidor 61.5 11 0.00025 35.3 4.1 34 1-35 61-94 (384)
44 TIGR01123 ilvE_II branched-cha 56.1 46 0.001 30.6 7.3 73 19-106 167-248 (313)
45 COG0124 HisS Histidyl-tRNA syn 52.8 3.9 8.5E-05 39.7 -0.5 33 237-274 63-95 (429)
46 PRK08868 flagellar protein Fla 48.0 81 0.0018 26.0 6.5 51 12-62 74-130 (144)
47 PF11576 DUF3236: Protein of u 47.7 20 0.00044 29.4 2.9 51 2-52 68-123 (154)
48 PRK07738 flagellar protein Fla 39.6 1.4E+02 0.0031 23.6 6.6 51 12-62 49-105 (117)
49 smart00135 LY Low-density lipo 34.7 38 0.00082 20.3 2.2 18 29-46 12-29 (43)
50 PRK00103 rRNA large subunit me 33.7 93 0.002 25.9 5.0 28 36-63 66-93 (157)
51 PF09413 DUF2007: Domain of un 33.4 52 0.0011 22.6 3.0 28 261-288 40-67 (67)
52 COG1778 Low specificity phosph 33.3 1.6E+02 0.0035 24.8 6.2 66 31-102 11-85 (170)
53 PRK09860 putative alcohol dehy 33.1 65 0.0014 30.7 4.5 46 2-59 65-110 (383)
54 PRK08452 flagellar protein Fla 32.8 2.2E+02 0.0047 22.8 6.7 50 13-62 57-112 (124)
55 COG0079 HisC Histidinol-phosph 32.5 2.7E+02 0.0058 26.3 8.5 47 52-100 84-130 (356)
56 PF07676 PD40: WD40-like Beta 31.8 16 0.00034 22.2 0.0 24 22-45 5-28 (39)
57 PF12909 DUF3832: Protein of u 31.5 83 0.0018 23.7 3.9 33 252-288 15-48 (89)
58 PRK15454 ethanol dehydrogenase 30.2 73 0.0016 30.5 4.3 46 2-59 83-128 (395)
59 PRK06110 hypothetical protein; 29.3 3.4E+02 0.0075 24.9 8.6 39 70-108 96-134 (322)
60 PRK02991 D-serine dehydratase; 29.0 4.9E+02 0.011 25.4 9.8 41 69-109 182-222 (441)
61 PF13199 Glyco_hydro_66: Glyco 28.4 1.8E+02 0.0039 29.4 6.8 109 15-124 247-365 (559)
62 PF14028 SpaB_C: SpaB C-termin 27.9 91 0.002 27.8 4.4 25 253-277 37-61 (283)
63 COG1576 Uncharacterized conser 27.6 1.4E+02 0.003 25.0 4.9 51 30-83 60-110 (155)
64 cd08179 NADPH_BDH NADPH-depend 27.5 91 0.002 29.5 4.4 46 2-59 58-103 (375)
65 PF05991 NYN_YacP: YacP-like N 27.4 2.2E+02 0.0047 23.7 6.3 77 15-97 32-121 (166)
66 PRK06732 phosphopantothenate-- 27.1 3.4E+02 0.0073 23.8 7.7 52 12-63 166-224 (229)
67 PRK15138 aldehyde reductase; P 26.9 90 0.002 29.8 4.3 33 2-35 62-94 (387)
68 PF03646 FlaG: FlaG protein; 26.7 2E+02 0.0043 21.8 5.5 51 12-62 40-96 (107)
69 COG4019 Uncharacterized protei 26.4 1.4E+02 0.0029 24.2 4.4 51 2-52 69-124 (156)
70 COG1454 EutG Alcohol dehydroge 26.0 1E+02 0.0022 29.5 4.4 49 2-62 63-111 (377)
71 cd08186 Fe-ADH8 Iron-containin 25.8 1E+02 0.0022 29.2 4.5 32 2-34 61-92 (383)
72 cd08185 Fe-ADH1 Iron-containin 25.6 99 0.0022 29.2 4.3 46 2-59 60-105 (380)
73 PF14272 Gly_rich_SFCGS: Glyci 25.2 59 0.0013 24.9 2.1 23 17-39 37-59 (115)
74 PRK09620 hypothetical protein; 25.0 3.4E+02 0.0075 23.8 7.4 52 13-64 161-220 (229)
75 PRK11761 cysM cysteine synthas 24.9 3.2E+02 0.0069 24.9 7.4 29 70-98 89-117 (296)
76 cd08181 PPD-like 1,3-propanedi 24.8 1.1E+02 0.0024 28.7 4.4 46 2-59 60-105 (357)
77 TIGR00689 rpiB_lacA_lacB sugar 24.8 1.5E+02 0.0032 24.4 4.6 30 7-36 35-65 (144)
78 TIGR03577 EF_0830 conserved hy 24.8 59 0.0013 24.9 2.0 23 17-39 37-59 (115)
79 PRK08638 threonine dehydratase 24.8 2.9E+02 0.0063 25.7 7.2 40 70-109 101-140 (333)
80 PRK08813 threonine dehydratase 24.8 3E+02 0.0065 26.0 7.3 38 70-107 107-144 (349)
81 cd06395 PB1_Map2k5 PB1 domain 24.3 82 0.0018 23.3 2.6 42 15-63 29-70 (91)
82 cd08178 AAD_C C-terminal alcoh 24.1 1.1E+02 0.0024 29.2 4.4 32 2-34 55-86 (398)
83 cd08176 LPO Lactadehyde:propan 23.9 1.2E+02 0.0025 28.8 4.5 33 2-35 62-94 (377)
84 PF00017 SH2: SH2 domain; Int 23.9 47 0.001 23.3 1.4 14 252-265 20-33 (77)
85 PF09981 DUF2218: Uncharacteri 23.9 2E+02 0.0042 21.4 4.8 41 239-287 32-72 (89)
86 PLN02970 serine racemase 23.5 3.3E+02 0.0072 25.2 7.4 40 70-109 101-140 (328)
87 PRK14644 hypothetical protein; 23.2 1.4E+02 0.0031 24.1 4.2 30 258-287 20-49 (136)
88 PRK07544 branched-chain amino 22.3 4.1E+02 0.0088 24.0 7.6 69 19-104 169-244 (292)
89 cd06447 D-Ser-dehyd D-Serine d 22.0 6.8E+02 0.015 24.1 9.3 41 69-109 159-199 (404)
90 TIGR01120 rpiB ribose 5-phosph 21.8 1.8E+02 0.0039 23.9 4.5 30 7-36 36-66 (143)
91 PRK07048 serine/threonine dehy 21.4 4E+02 0.0086 24.4 7.4 32 70-101 98-129 (321)
92 cd08193 HVD 5-hydroxyvalerate 21.2 1.4E+02 0.003 28.2 4.4 47 2-60 60-106 (376)
93 PF08812 YtxC: YtxC-like famil 20.7 5E+02 0.011 22.7 7.5 32 29-61 139-170 (221)
94 TIGR02638 lactal_redase lactal 20.5 1.5E+02 0.0032 28.1 4.4 33 2-35 63-95 (379)
95 cd08189 Fe-ADH5 Iron-containin 20.2 1.5E+02 0.0033 27.9 4.5 32 2-34 60-91 (374)
96 PRK13410 molecular chaperone D 20.0 5.3E+02 0.011 26.7 8.5 69 28-96 88-168 (668)
No 1
>cd03089 PMM_PGM The phosphomannomutase/phosphoglucomutase (PMM/PGM) bifunctional enzyme catalyzes the reversible conversion of 1-phospho to 6-phospho-sugars (e.g. between mannose-1-phosphate and mannose-6-phosphate or glucose-1-phosphate and glucose-6-phosphate) via a bisphosphorylated sugar intermediate. The reaction involves two phosphoryl transfers, with an intervening 180 degree reorientation of the reaction intermediate during catalysis. Reorientation of the intermediate occurs without dissociation from the active site of the enzyme and is thus, a simple example of processivity, as defined by multiple rounds of catalysis without release of substrate. Glucose-6-phosphate and glucose-1-phosphate are known to be utilized for energy metabolism and cell surface construction, respectively. PMM/PGM belongs to the alpha-D-phosphohexomutase superfamily which includes several related enzymes that catalyze a reversible intramolecular phosphoryl transfer on their sugar substrates. Other membe
Probab=100.00 E-value=2.4e-54 Score=416.93 Aligned_cols=241 Identities=33% Similarity=0.501 Sum_probs=213.7
Q ss_pred CCCCCCCCCCChHHHHHHHHHHHhcCCcEEEEecCCCCeEEEEcCCCcccChhHHHHHHHHHHHhhCCCCeEEEcccCCH
Q 022948 1 MFPNHIPNPEDKTAMALTRAAVLENNADLGVVFDTDVDRSGVVDNKGNPINGDKLIALMSAIVLKEHPGTTIVTDARTSM 80 (289)
Q Consensus 1 ~Fp~~~P~P~~~~~l~~l~~~v~~~~adlGia~D~DgDR~~vvd~~G~~l~~d~~~~Ll~~~~l~~~~~~~vv~t~~ss~ 80 (289)
+||++.|||+.+++++.+.+.|++.+||+|+++||||||++++|++|+++++|++++|+++++++.+++..||+|++||.
T Consensus 200 ~F~~~~p~p~~~~~l~~l~~~v~~~~adlgia~D~DaDR~~ivd~~G~~l~~d~~~~lla~~ll~~~~~~~vv~~v~ss~ 279 (443)
T cd03089 200 TFPNHHPDPTDPENLEDLIAAVKENGADLGIAFDGDGDRLGVVDEKGEIIWGDRLLALFARDILKRNPGATIVYDVKCSR 279 (443)
T ss_pred CCCCCCcCCCCHHHHHHHHHHHHHcCCCEEEEecCCcceeEEECCCCcEeCHHHHHHHHHHHHHHHCCCCeEEEecccch
Confidence 59999999988999999999999999999999999999999999999999999999999999998776667999999999
Q ss_pred HHHHHHHHcCCcEEEeecccHHHHHHHhhcccCCceeeEEeecccceecCC-CccCCCHHHHHHHHHHHHHHHHhcCCCC
Q 022948 81 ALTKFITDRGGNHCLYRVGYRNVIDKGVHLNEDGIETHLMMETSGHGALKE-NYFLDDGAYMVVKIIIQMVRMKLEGSDE 159 (289)
Q Consensus 81 ~l~~~a~~~g~~v~~t~vG~k~i~~~~~~~~~~g~~~~~g~E~sg~~~~~~-~~~~~Dgi~a~l~ll~e~~~~~~~~~~~ 159 (289)
+++++++++|+++++|+||++|+++.|.+.+ ++||||+|||++|++ +.+++|||+++++++ ||++. +++
T Consensus 280 ~~~~ia~~~g~~v~~t~vG~k~v~~~m~~~~-----~~~ggE~sgg~~~~~~~~~~~Dgi~a~l~il-e~la~----~~~ 349 (443)
T cd03089 280 NLYDFIEEAGGKPIMWKTGHSFIKAKMKETG-----ALLAGEMSGHIFFKDRWYGFDDGIYAALRLL-ELLSK----SGK 349 (443)
T ss_pred HHHHHHHHcCCeEEEecCcHHHHHHHHHHhC-----CcEEEeccceEEEcCCcCCCccHHHHHHHHH-HHHHh----cCC
Confidence 9999999999999999999999999999876 589999999999999 999999999999776 99998 899
Q ss_pred CHHHHHHHchhhhccceeEEEeccChhhHhhhHHHHHHHHHhhhhhcccCCccccccCccccccccccCCCCCCcccccC
Q 022948 160 GIGSLIKDLEEPLESIELRMNIISEPRYAKAKGSEAIEEFRKYIEEGRLQGWELDSCGDCWVSEGCLVDSNESPAAIDAR 239 (289)
Q Consensus 160 ~l~~ll~~lp~~~~~~~~~i~~~~~~~~~~~~~~~~m~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~D 239 (289)
+|+++++++|+++... ++++. |+|.+ ++++|++|.+..... ..+++++|
T Consensus 350 ~Lsel~~~~p~~~~~~--~~~~~--~~~~~--k~~~~~~l~~~~~~~-------------------------~~~~~~~D 398 (443)
T cd03089 350 TLSELLADLPKYFSTP--EIRIP--VTEED--KFAVIERLKEHFEFP-------------------------GAEIIDID 398 (443)
T ss_pred CHHHHHHhccccCCCC--ceecc--CCchh--HHHHHHHHHHHhccc-------------------------cCCeeeec
Confidence 9999999999854332 33333 33433 468999998755320 01467899
Q ss_pred ceEEEEeecccCCceEEEEecCCCCccEEEEEEeCChhHHHHHHHHHhc
Q 022948 240 MYRAKVTDEEHGQYGWIHLRQSIHNPNIAVNVQSMVPGGCRSITKSLRD 288 (289)
Q Consensus 240 Giki~~~~~~~~~~~w~liRpSgTEP~iriy~Ea~~~~~~~~l~~~~~~ 288 (289)
|+|+.| ++||+|||||||||++|||+||+|++.++++++++.+
T Consensus 399 Giki~~------~~~WvliRpSgtEP~iriy~Ea~~~~~a~~l~~~~~~ 441 (443)
T cd03089 399 GVRVDF------EDGWGLVRASNTEPVLVLRFEADTEEGLEEIKAELRK 441 (443)
T ss_pred CEEEEE------CCeeEEEeecCCCCEEEEEEEeCCHHHHHHHHHHHHh
Confidence 999999 6899999999999999999999999999999998764
No 2
>PRK09542 manB phosphomannomutase/phosphoglucomutase; Reviewed
Probab=100.00 E-value=1.3e-53 Score=411.86 Aligned_cols=240 Identities=25% Similarity=0.362 Sum_probs=212.0
Q ss_pred CCCCCCCCCCChHHHHHHHHHHHhcCCcEEEEecCCCCeEEEEcCCCcccChhHHHHHHHHHHHhhCCCCeEEEcccCCH
Q 022948 1 MFPNHIPNPEDKTAMALTRAAVLENNADLGVVFDTDVDRSGVVDNKGNPINGDKLIALMSAIVLKEHPGTTIVTDARTSM 80 (289)
Q Consensus 1 ~Fp~~~P~P~~~~~l~~l~~~v~~~~adlGia~D~DgDR~~vvd~~G~~l~~d~~~~Ll~~~~l~~~~~~~vv~t~~ss~ 80 (289)
+||++.|||+.+++++.+.+.|++.+||+||++||||||++++|++|+++++|++++|+++++++++++..||.|++||.
T Consensus 201 ~Fp~~~p~P~~~~~l~~l~~~v~~~~adlGia~DgD~DR~~ivd~~G~~l~~d~~~~l~~~~~l~~~~~~~vv~~v~ss~ 280 (445)
T PRK09542 201 TFPNHEANPLDPANLVDLQAFVRETGADIGLAFDGDADRCFVVDERGQPVSPSAVTALVAARELAREPGATIIHNLITSR 280 (445)
T ss_pred CCCCCCcCCCCHHHHHHHHHHHHHcCCCEEEEECCCCceEEEECCCCCCccHHHHHHHHHHHHHHHCCCCeEEEeeccch
Confidence 59999999998999999999999999999999999999999999999999999999999999998877778999999999
Q ss_pred HHHHHHHHcCCcEEEeecccHHHHHHHhhcccCCceeeEEeecccceecCCCccCCCHHHHHHHHHHHHHHHHhcCCCCC
Q 022948 81 ALTKFITDRGGNHCLYRVGYRNVIDKGVHLNEDGIETHLMMETSGHGALKENYFLDDGAYMVVKIIIQMVRMKLEGSDEG 160 (289)
Q Consensus 81 ~l~~~a~~~g~~v~~t~vG~k~i~~~~~~~~~~g~~~~~g~E~sg~~~~~~~~~~~Dgi~a~l~ll~e~~~~~~~~~~~~ 160 (289)
+++++|+++|+++++|+||++|++++|.+.+ ++||||+|||++|+++++++|||+++++++ +|++. ++++
T Consensus 281 ~~~~~a~~~g~~~~~t~vG~~~i~~~m~~~~-----~~~ggE~sgg~~f~~~~~~~Dgi~a~~~ll-e~l~~----~~~~ 350 (445)
T PRK09542 281 AVPELVAERGGTPVRTRVGHSFIKALMAETG-----AIFGGEHSAHYYFRDFWGADSGMLAALHVL-AALGE----QDRP 350 (445)
T ss_pred hHHHHHHHcCCeEEEecCcHHHHHHHHHHhC-----CcEEEeeeccEEecCcCCCCcHHHHHHHHH-HHHHh----cCCC
Confidence 9999999999999999999999999999876 489999999999999999999999999776 99987 8999
Q ss_pred HHHHHHHchhhhccceeEEEeccChhhHhhhHHHHHHHHHhhhhhcccCCccccccCccccccccccCCCCCCcccccCc
Q 022948 161 IGSLIKDLEEPLESIELRMNIISEPRYAKAKGSEAIEEFRKYIEEGRLQGWELDSCGDCWVSEGCLVDSNESPAAIDARM 240 (289)
Q Consensus 161 l~~ll~~lp~~~~~~~~~i~~~~~~~~~~~~~~~~m~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~DG 240 (289)
|+++++.+|+++ ...+++|+. .+ ++++|+++.+.+.+. ..+++++||
T Consensus 351 l~~l~~~~~~~~--~~~~~~~~~----~~--~~~~~~~l~~~~~~~-------------------------~~~~~~~DG 397 (445)
T PRK09542 351 LSELMADYQRYA--ASGEINSTV----AD--APARMEAVLKAFADR-------------------------IVSVDHLDG 397 (445)
T ss_pred HHHHHHhhhhcC--cccceeecC----CC--HHHHHHHHHHHhhhc-------------------------cCCceecce
Confidence 999999988654 234555552 11 235888887755420 014668999
Q ss_pred eEEEEeecccCCceEEEEecCCCCccEEEEEEeCChhHHHHHHHHHhc
Q 022948 241 YRAKVTDEEHGQYGWIHLRQSIHNPNIAVNVQSMVPGGCRSITKSLRD 288 (289)
Q Consensus 241 iki~~~~~~~~~~~w~liRpSgTEP~iriy~Ea~~~~~~~~l~~~~~~ 288 (289)
+|++| ++++|+|||||||||++|||+||+++++++++++.+.+
T Consensus 398 vki~~-----~dg~WvliRpSgTEP~lriy~Ea~~~e~~~~l~~~~~~ 440 (445)
T PRK09542 398 VTVDL-----GDGSWFNLRASNTEPLLRLNVEARTEEEVDALVDEVLA 440 (445)
T ss_pred EEEEe-----cCCcEEEEEecCCCcEEEEEEEeCCHHHHHHHHHHHHH
Confidence 99998 45569999999999999999999999999999998865
No 3
>PLN02371 phosphoglucosamine mutase family protein
Probab=100.00 E-value=4.1e-52 Score=412.34 Aligned_cols=256 Identities=56% Similarity=0.875 Sum_probs=217.4
Q ss_pred CCCCCCCCCCChHHHHHHHHHHHhcCCcEEEEecCCCCeEEEEcCCCcccChhHHHHHHHHHHHhhCCCCeEEEcccCCH
Q 022948 1 MFPNHIPNPEDKTAMALTRAAVLENNADLGVVFDTDVDRSGVVDNKGNPINGDKLIALMSAIVLKEHPGTTIVTDARTSM 80 (289)
Q Consensus 1 ~Fp~~~P~P~~~~~l~~l~~~v~~~~adlGia~D~DgDR~~vvd~~G~~l~~d~~~~Ll~~~~l~~~~~~~vv~t~~ss~ 80 (289)
.||+++|||+++++++.+.+.|++.+||+||++||||||++++|++|++|++|++++|+++++++.+++..||+|++||.
T Consensus 301 ~Fp~~~P~P~~~~~l~~l~~~v~~~~aDlGia~DgDaDR~~vvD~~G~~i~gd~l~aLla~~ll~~~~g~~VV~~v~sS~ 380 (583)
T PLN02371 301 MFPNHIPNPEDKAAMSATTQAVLANKADLGIIFDTDVDRSAVVDSSGREINRNRLIALMSAIVLEEHPGTTIVTDSVTSD 380 (583)
T ss_pred CCCCcCCCCCCHHHHHHHHHHHHhcCCCEEEEECCCccceeEECCCCEEECHHHHHHHHHHHHHHhCCCCEEEEecccch
Confidence 49999999999999999999999999999999999999999999999999999999999999999877778999999999
Q ss_pred HHHHHHHHcCCcEEEeecccHHHHHHHhhcccCCceeeEEeecccceecCCCccCCCHHHHHHHHHHHHHHHH-hcCCCC
Q 022948 81 ALTKFITDRGGNHCLYRVGYRNVIDKGVHLNEDGIETHLMMETSGHGALKENYFLDDGAYMVVKIIIQMVRMK-LEGSDE 159 (289)
Q Consensus 81 ~l~~~a~~~g~~v~~t~vG~k~i~~~~~~~~~~g~~~~~g~E~sg~~~~~~~~~~~Dgi~a~l~ll~e~~~~~-~~~~~~ 159 (289)
+++++|+++|+++++|+||++|++++|.+.++.|.+++||||+|||++|+++++.+||++++++|| ++++.. .+..+.
T Consensus 381 ~l~~ia~~~G~~v~rt~vG~k~v~~~m~~~~~~~~~~~~ggEeSG~~~~~~~~~~dDg~~a~~~il-e~la~~~~~~~~~ 459 (583)
T PLN02371 381 GLTTFIEKKGGKHHRFKRGYKNVIDKGVRLNSDGEETHLMIETSGHGALKENHFLDDGAYLAVKII-IELVRMRAAGAGG 459 (583)
T ss_pred hHHHHHHHcCCeEEEecCchHHHHHHHHHhhccCCceEEEEcccCeEEECCCCCCCcHHHHHHHHH-HHHHHHHhccCCC
Confidence 999999999999999999999999999987655555799999999999999999999999999887 666652 223366
Q ss_pred CHHHHHHHchhhhccceeEEEeccChh---hHhhhHHHHHHHHHhhhhhcccCCccccccCccccccccccCCCCCCccc
Q 022948 160 GIGSLIKDLEEPLESIELRMNIISEPR---YAKAKGSEAIEEFRKYIEEGRLQGWELDSCGDCWVSEGCLVDSNESPAAI 236 (289)
Q Consensus 160 ~l~~ll~~lp~~~~~~~~~i~~~~~~~---~~~~~~~~~m~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~ 236 (289)
+|+++++++|+++...+.+.+++ |+ |.+ +...+|++|.+... ..++. ...+.
T Consensus 460 ~Lsel~~~lp~~~~~~~~r~~v~--~~~~~~~~-kg~~v~~~l~~~~~--~~~~~--------------------~~~~~ 514 (583)
T PLN02371 460 GLGDLIEDLEEPLEAVELRLKIL--DEGKDFKA-YGEEVLEHLRNSIE--SDGKL--------------------EGAPV 514 (583)
T ss_pred CHHHHHHhchhccCCceeeecCC--ccchhHHH-HHHHHHHHHHhhhh--ccccc--------------------ccCcc
Confidence 79999999997765555666554 32 322 12268888875432 11111 12346
Q ss_pred ccCceEEE----EeecccCCceEEEEecCCCCccEEEEEEeCChhHHHHHHHHHhc
Q 022948 237 DARMYRAK----VTDEEHGQYGWIHLRQSIHNPNIAVNVQSMVPGGCRSITKSLRD 288 (289)
Q Consensus 237 ~~DGiki~----~~~~~~~~~~w~liRpSgTEP~iriy~Ea~~~~~~~~l~~~~~~ 288 (289)
.+||+|+. + ++||+|||||+|||++|||+||++++.++++++.+.+
T Consensus 515 ~~DGvkv~~~~~~------~~gWvLiRpS~TEP~iri~~Ea~s~e~a~~l~~~~~~ 564 (583)
T PLN02371 515 NYEGVRVSDEGEG------FGGWFLLRQSLHDPVIPLNIESSSPGGAQKMALVVLT 564 (583)
T ss_pred ccceEEEEecccC------CCceEEEEeCCCCceEEEEEeECCHHHHHHHHHHHHH
Confidence 89999998 6 6789999999999999999999999999999998875
No 4
>cd05800 PGM_like2 This PGM-like (phosphoglucomutase-like) protein of unknown function belongs to the alpha-D-phosphohexomutase superfamily and is found in both archaea and bacteria. The alpha-D-phosphohexomutases include several related enzymes that catalyze a reversible intramolecular phosphoryl transfer on their sugar substrates. Other members of this superfamily include phosphoglucosamine mutase (PNGM), phosphoacetylglucosamine mutase (PAGM), the bacterial phosphomannomutase ManB, the bacterial phosphoglucosamine mutase GlmM, and the bifunctional phosphomannomutase/phosphoglucomutase (PMM/PGM). Each of these enzymes has four structural domains (subdomains) with a centrally located active site formed by four loops, one from each subdomain. All four subdomains are included in this alignment model.
Probab=100.00 E-value=4.4e-52 Score=402.95 Aligned_cols=248 Identities=20% Similarity=0.287 Sum_probs=213.0
Q ss_pred CCCCCCCCCCChHHHHHHHHHHHhcCCcEEEEecCCCCeEEEEcCCCcccChhHHHHHHHHHHHhhC-CCCeEEEcccCC
Q 022948 1 MFPNHIPNPEDKTAMALTRAAVLENNADLGVVFDTDVDRSGVVDNKGNPINGDKLIALMSAIVLKEH-PGTTIVTDARTS 79 (289)
Q Consensus 1 ~Fp~~~P~P~~~~~l~~l~~~v~~~~adlGia~D~DgDR~~vvd~~G~~l~~d~~~~Ll~~~~l~~~-~~~~vv~t~~ss 79 (289)
+||+++|||+ ++++..+++.|++.+||+|+++||||||++++|++|+++++|++++|+++++++.. .+..||+|+.||
T Consensus 210 ~F~~~~p~p~-~~~l~~l~~~v~~~~ad~Gia~D~DgDR~~vvd~~G~~l~~d~~~al~a~~ll~~~~~~~~vv~~v~ss 288 (461)
T cd05800 210 LFGGIPPEPI-EKNLGELAEAVKEGGADLGLATDGDADRIGAVDEKGNFLDPNQILALLLDYLLENKGLRGPVVKTVSTT 288 (461)
T ss_pred CCCCCCCCCC-HHHHHHHHHHHHhcCCCEEEEECCCCCeEEEEeCCCceeCHHHHHHHHHHHHHHcCCCCCcEEEEcchH
Confidence 5999999998 89999999999999999999999999999999999999999999999999999873 345799999999
Q ss_pred HHHHHHHHHcCCcEEEeecccHHHHHHHhhcccCCceeeEEeecccceecCCCccCCCHHHHHHHHHHHHHHHHhcCCCC
Q 022948 80 MALTKFITDRGGNHCLYRVGYRNVIDKGVHLNEDGIETHLMMETSGHGALKENYFLDDGAYMVVKIIIQMVRMKLEGSDE 159 (289)
Q Consensus 80 ~~l~~~a~~~g~~v~~t~vG~k~i~~~~~~~~~~g~~~~~g~E~sg~~~~~~~~~~~Dgi~a~l~ll~e~~~~~~~~~~~ 159 (289)
.+++++++++|+++++|+||++|++++|.+.+ ++||||+|||++|+++++++|||+++++++ ++++. +++
T Consensus 289 ~~~~~~a~~~g~~v~~t~~G~~~v~~~~~~~~-----~~~g~E~sg~~~~~~~~~~~Dgi~a~l~il-e~la~----~~~ 358 (461)
T cd05800 289 HLIDRIAEKHGLPVYETPVGFKYIAEKMLEED-----VLIGGEESGGLGIRGHIPERDGILAGLLLL-EAVAK----TGK 358 (461)
T ss_pred HHHHHHHHHhCCeeeeCCCCHHHHHHHHhhCC-----eEEEEcCcCceeCCCCCCCchHHHHHHHHH-HHHHh----hCC
Confidence 99999999999999999999999999998865 589999999999999999999999999876 99988 899
Q ss_pred CHHHHHHHchhhhc-cceeEEEeccChhhHhhhHHHHHHHHHhhhhhcccCCccccccCccccccccccCCCCCCccccc
Q 022948 160 GIGSLIKDLEEPLE-SIELRMNIISEPRYAKAKGSEAIEEFRKYIEEGRLQGWELDSCGDCWVSEGCLVDSNESPAAIDA 238 (289)
Q Consensus 160 ~l~~ll~~lp~~~~-~~~~~i~~~~~~~~~~~~~~~~m~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (289)
+|+++++++|++|. ++..+..++ |+|.. ++++|++|.+.... .+.+.. ..+++++
T Consensus 359 ~L~~l~~~l~~~~g~~~~~~~~i~--~~~~~--~~~v~~~l~~~~~~-~~~~~~-------------------~~~~~~~ 414 (461)
T cd05800 359 PLSELVAELEEEYGPSYYDRIDLR--LTPAQ--KEAILEKLKNEPPL-SIAGGK-------------------VDEVNTI 414 (461)
T ss_pred CHHHHHHHHHHHhCCCceeecCee--cCHHH--HHHHHHHHhccCch-hhCCce-------------------eEEEEec
Confidence 99999999997653 223344443 33543 46799999875432 112211 0246689
Q ss_pred CceEEEEeecccCCceEEEEecCCCCccEEEEEEeCChhHHHHHHHHHhc
Q 022948 239 RMYRAKVTDEEHGQYGWIHLRQSIHNPNIAVNVQSMVPGGCRSITKSLRD 288 (289)
Q Consensus 239 DGiki~~~~~~~~~~~w~liRpSgTEP~iriy~Ea~~~~~~~~l~~~~~~ 288 (289)
||+|+.| ++++|++||||||||++|||+|+++++.++++++.+..
T Consensus 415 dGvrv~~-----~d~~wvlvRpS~tep~iriy~Ea~~~~~a~~l~~~~~~ 459 (461)
T cd05800 415 DGVKLVL-----EDGSWLLIRPSGTEPLLRIYAEAPSPEKVEALLDAGKK 459 (461)
T ss_pred CeEEEEE-----cCCcEEEEEcCCCCceEEEEEecCCHHHHHHHHHHHHh
Confidence 9999999 45679999999999999999999999999999998864
No 5
>PRK14321 glmM phosphoglucosamine mutase; Provisional
Probab=100.00 E-value=1.1e-51 Score=398.89 Aligned_cols=238 Identities=21% Similarity=0.299 Sum_probs=208.1
Q ss_pred CCCCCCCCCChHHHHHHHHHHHhcCCcEEEEecCCCCeEEEEcCCCcccChhHHHHHHHHHHHhhCCCCeEEEcccCCHH
Q 022948 2 FPNHIPNPEDKTAMALTRAAVLENNADLGVVFDTDVDRSGVVDNKGNPINGDKLIALMSAIVLKEHPGTTIVTDARTSMA 81 (289)
Q Consensus 2 Fp~~~P~P~~~~~l~~l~~~v~~~~adlGia~D~DgDR~~vvd~~G~~l~~d~~~~Ll~~~~l~~~~~~~vv~t~~ss~~ 81 (289)
|| +.|+|. |++++.+.+.|++.+||+|+++||||||++++|++|+++++|++++|+++++++++++..||.|++||.+
T Consensus 203 f~-~~p~p~-~~~l~~l~~~v~~~~adlGia~DgD~DR~~vvd~~G~~~~~d~~~~l~a~~ll~~~~~~~vV~~v~ss~~ 280 (449)
T PRK14321 203 FV-RELEPN-AKSLSMLAKTVKVLKADVGIAHDGDADRIGVVDDQGNFVEYEVMLSLIAGYMLRKFGKGKIVTTVDAGFA 280 (449)
T ss_pred CC-CCCCCc-hhhHHHHHHHHHHCCCCEEEEecCCCceEEEECCCCCEeChHHHHHHHHHHHHHhCCCCcEEEeccccHH
Confidence 55 468997 8999999999999999999999999999999999999999999999999999987666689999999999
Q ss_pred HHHHHHHcCCcEEEeecccHHHHHHHhhcccCCceeeEEeecccceecCCCccCCCHHHHHHHHHHHHHHHHhcCCCCCH
Q 022948 82 LTKFITDRGGNHCLYRVGYRNVIDKGVHLNEDGIETHLMMETSGHGALKENYFLDDGAYMVVKIIIQMVRMKLEGSDEGI 161 (289)
Q Consensus 82 l~~~a~~~g~~v~~t~vG~k~i~~~~~~~~~~g~~~~~g~E~sg~~~~~~~~~~~Dgi~a~l~ll~e~~~~~~~~~~~~l 161 (289)
++++|+++|+++++||||++|++++|.+.+ ++||||+|||++|++|++++|||++++++| ++++. ++ +|
T Consensus 281 i~~~a~~~g~~v~~t~vG~~~i~~~m~~~~-----~~~ggE~sGg~~~~~~~~~~Dgi~a~~~il-e~la~----~~-~L 349 (449)
T PRK14321 281 LDDYIRPLGGEVIRTRVGDVAVAEELAKHG-----GVFGGEPSGTWIIPQWNLTPDGIFAGALVL-EMIDR----LG-PI 349 (449)
T ss_pred HHHHHHHcCCEEEEEecChHHHHHHHHhhC-----CEEEecCCCCEEeCCcCCCCCHHHHHHHHH-HHHHc----CC-CH
Confidence 999999999999999999999999999876 489999999999999999999999999876 99987 77 99
Q ss_pred HHHHHHchhhhccceeEEEeccChhhHhhhHHHHHHHHHhhhhhcccCCccccccCccccccccccCCCCCCcccccCce
Q 022948 162 GSLIKDLEEPLESIELRMNIISEPRYAKAKGSEAIEEFRKYIEEGRLQGWELDSCGDCWVSEGCLVDSNESPAAIDARMY 241 (289)
Q Consensus 162 ~~ll~~lp~~~~~~~~~i~~~~~~~~~~~~~~~~m~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~DGi 241 (289)
+++++.+|.++.. ..+++|+ |.+ ++++|+++.+...+ .+. ..+++++||+
T Consensus 350 s~l~~~~~~~~~~-~~~v~~~----~~~--k~~~~~~l~~~~~~-~~~----------------------~~~v~~~DGv 399 (449)
T PRK14321 350 SELAKEVPRYVTL-RAKIPCP----NEK--KAKAMEIIAKEALK-NFD----------------------YERLIDIDGI 399 (449)
T ss_pred HHHHHhccccccc-cccccCc----hhh--HHHHHHHHHHHhhh-hcc----------------------cCceeecceE
Confidence 9999999976522 3345444 433 46788888665442 111 1256789999
Q ss_pred EEEEeecccCCceEEEEecCCCCccEEEEEEeCChhHHHHHHHHHhc
Q 022948 242 RAKVTDEEHGQYGWIHLRQSIHNPNIAVNVQSMVPGGCRSITKSLRD 288 (289)
Q Consensus 242 ki~~~~~~~~~~~w~liRpSgTEP~iriy~Ea~~~~~~~~l~~~~~~ 288 (289)
|+.+ ++||+|||||||||++|||+||+++++++++++.+.+
T Consensus 400 kv~~------~~~WvliRpS~TeP~~riy~Ea~s~e~~~~l~~~~~~ 440 (449)
T PRK14321 400 RIEN------DDWWILFRPSGTEPIMRITLEAHTEEKAEELMEKAEK 440 (449)
T ss_pred EEec------CCcEEEEecCCCCceEEEEEecCCHHHHHHHHHHHHH
Confidence 9998 7789999999999999999999999999999998875
No 6
>PRK15414 phosphomannomutase CpsG; Provisional
Probab=100.00 E-value=1.4e-51 Score=398.83 Aligned_cols=240 Identities=24% Similarity=0.316 Sum_probs=206.0
Q ss_pred CCCCCCCCCCChHHHHHHHHHHHhcCCcEEEEecCCCCeEEEEcCCCcccChhHHHHHHHHHHHhhCCCCeEEEcccCCH
Q 022948 1 MFPNHIPNPEDKTAMALTRAAVLENNADLGVVFDTDVDRSGVVDNKGNPINGDKLIALMSAIVLKEHPGTTIVTDARTSM 80 (289)
Q Consensus 1 ~Fp~~~P~P~~~~~l~~l~~~v~~~~adlGia~D~DgDR~~vvd~~G~~l~~d~~~~Ll~~~~l~~~~~~~vv~t~~ss~ 80 (289)
+||++.|||+.+++++.+++.|++.+||+|+++||||||++++|++|+++++|++++|+++++++.+++..||.++.+|.
T Consensus 212 ~F~~~~p~P~~~~~l~~l~~~v~~~~adlGia~DgDaDR~~~vde~G~~l~~d~~~~l~a~~ll~~~~g~~vv~~~~~s~ 291 (456)
T PRK15414 212 NFPNGIPNPLLPECRDDTRNAVIKHGADMGIAFDGDFDRCFLFDEKGQFIEGYYIVGLLAEAFLEKNPGAKIIHDPRLSW 291 (456)
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHcCCCEEEEECCCcceEEEECCCCCEecHHHHHHHHHHHHHHhCCCCeeccCchhhh
Confidence 49999999998999999999999999999999999999999999999999999999999999998776667999888888
Q ss_pred HHHHHHHHcCCcEEEeecccHHHHHHHhhcccCCceeeEEeecccceecCCCccCCCHHHHHHHHHHHHHHHHhcCCCCC
Q 022948 81 ALTKFITDRGGNHCLYRVGYRNVIDKGVHLNEDGIETHLMMETSGHGALKENYFLDDGAYMVVKIIIQMVRMKLEGSDEG 160 (289)
Q Consensus 81 ~l~~~a~~~g~~v~~t~vG~k~i~~~~~~~~~~g~~~~~g~E~sg~~~~~~~~~~~Dgi~a~l~ll~e~~~~~~~~~~~~ 160 (289)
.++++++++|+++++|+||++||+++|.+.+ ++||||+|||++|+++.+++|||+++++++ |+++. ++++
T Consensus 292 ~l~~~~~~~g~~~~~t~vG~~~i~~~m~~~~-----~~~ggE~sgg~~~~~~~~~~Dgi~a~~~il-e~la~----~~~~ 361 (456)
T PRK15414 292 NTVDVVTAAGGTPVMSKTGHAFIKERMRKED-----AIYGGEMSAHHYFRDFAYCDSGMIPWLLVA-ELVCL----KGKT 361 (456)
T ss_pred HHHHHHHHcCCEEEEecCcHHHHHHHHHhcC-----CeEEEcccceEEeCCCCCCccHHHHHHHHH-HHHHc----cCCC
Confidence 9999999999999999999999999999876 589999999999999999999999999776 99987 8999
Q ss_pred HHHHHHHchhhhccceeEEEeccChhhHhhhHHHHHHHHHhhhhhcccCCccccccCccccccccccCCCCCCcccccCc
Q 022948 161 IGSLIKDLEEPLESIELRMNIISEPRYAKAKGSEAIEEFRKYIEEGRLQGWELDSCGDCWVSEGCLVDSNESPAAIDARM 240 (289)
Q Consensus 161 l~~ll~~lp~~~~~~~~~i~~~~~~~~~~~~~~~~m~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~DG 240 (289)
|++++++++..++. ...+..+.+|+|.. ++++|+++.+.. .+++++||
T Consensus 362 L~~l~~~~~~~~~~-~~~~~~~~~~~~~~--~~~~~~~~~~~~-----------------------------~~~~~~DG 409 (456)
T PRK15414 362 LGELVRDRMAAFPA-SGEINSKLAQPVEA--INRVEQHFSREA-----------------------------LAVDRTDG 409 (456)
T ss_pred HHHHHHHHHHhcCC-CCccccCCCCHHHH--HHHHHHHhcccc-----------------------------CcEEecce
Confidence 99999987766643 22333333354432 345555442211 24678999
Q ss_pred eEEEEeecccCCceEEEEecCCCCccEEEEEEeC-ChhHHHHHHHHHhc
Q 022948 241 YRAKVTDEEHGQYGWIHLRQSIHNPNIAVNVQSM-VPGGCRSITKSLRD 288 (289)
Q Consensus 241 iki~~~~~~~~~~~w~liRpSgTEP~iriy~Ea~-~~~~~~~l~~~~~~ 288 (289)
+|+.| ++||++||||||||++|||+||+ +++.++++++++.+
T Consensus 410 vki~~------~~~~lllRpSgTEP~iri~~Ea~~~~~~~~~~~~~~~~ 452 (456)
T PRK15414 410 ISMTF------ADWRFNLRSSNTEPVVRLNVESRGDVPLMEARTRTLLT 452 (456)
T ss_pred eEEEe------CCceEEEecCCCceEEEEEEecCCCHHHHHHHHHHHHH
Confidence 99999 67889999999999999999998 89999999887754
No 7
>cd05803 PGM_like4 This PGM-like (phosphoglucomutase-like) domain is located C-terminal to a mannose-1-phosphate guanyltransferase domain in a protein of unknown function that is found in both prokaryotes and eukaryotes. This domain belongs to the alpha-D-phosphohexomutase superfamily which includes several related enzymes that catalyze a reversible intramolecular phosphoryl transfer on their sugar substrates. Members of this superfamily include the phosphoglucomutases (PGM1 and PGM2), phosphoglucosamine mutase (PNGM), phosphoacetylglucosamine mutase (PAGM), the bacterial phosphomannomutase ManB, the bacterial phosphoglucosamine mutase GlmM, and the bifunctional phosphomannomutase/phosphoglucomutase (PMM/PGM). Each of these enzymes has four domains with a centrally located active site formed by four loops, one from each domain. All four domains are included in this alignment model.
Probab=100.00 E-value=2.8e-51 Score=395.74 Aligned_cols=234 Identities=23% Similarity=0.346 Sum_probs=207.1
Q ss_pred CCCCCCCCCCChHHHHHHHHHHHhcCCcEEEEecCCCCeEEEEcCCCcccChhHHHHHHHHHHHhh-CCCCeEEEcccCC
Q 022948 1 MFPNHIPNPEDKTAMALTRAAVLENNADLGVVFDTDVDRSGVVDNKGNPINGDKLIALMSAIVLKE-HPGTTIVTDARTS 79 (289)
Q Consensus 1 ~Fp~~~P~P~~~~~l~~l~~~v~~~~adlGia~D~DgDR~~vvd~~G~~l~~d~~~~Ll~~~~l~~-~~~~~vv~t~~ss 79 (289)
.|| +.|+|. |++++.+.+.|++.+||+|++|||||||++++|++|+++++|++++|+++++++. ..+..||+|+.||
T Consensus 210 ~F~-~~p~p~-~~~l~~l~~~v~~~~adlgi~~D~DgDR~~ivd~~G~~i~~d~~~al~a~~ll~~~~~~~~vv~~v~ss 287 (445)
T cd05803 210 LFP-HTPEPL-PENLTQLCAAVKESGADVGFAVDPDADRLALVDEDGRPIGEEYTLALAVDYVLKYGGRKGPVVVNLSTS 287 (445)
T ss_pred CCC-CCCCCC-hHHHHHHHHHHHhcCCCEEEeeCCCCceEEEECCCCCCcChHHHHHHHHHHHHHhcCCCCCEEEeccch
Confidence 487 789998 8999999999999999999999999999999999999999999999999999983 3334799999999
Q ss_pred HHHHHHHHHcCCcEEEeecccHHHHHHHhhcccCCceeeEEeecccceecCCCccCCCHHHHHHHHHHHHHHHHhcCCCC
Q 022948 80 MALTKFITDRGGNHCLYRVGYRNVIDKGVHLNEDGIETHLMMETSGHGALKENYFLDDGAYMVVKIIIQMVRMKLEGSDE 159 (289)
Q Consensus 80 ~~l~~~a~~~g~~v~~t~vG~k~i~~~~~~~~~~g~~~~~g~E~sg~~~~~~~~~~~Dgi~a~l~ll~e~~~~~~~~~~~ 159 (289)
.+++++|+++|+++++|+||++|++++|.+.+ ++||||+|||++|+++++++|||+++++++ ++++. +++
T Consensus 288 ~~i~~ia~~~g~~v~~t~vG~~~i~~~~~~~~-----~~~g~E~sg~~~~~~~~~~~Dgi~a~l~~l-e~la~----~~~ 357 (445)
T cd05803 288 RALEDIARKHGVPVFRSAVGEANVVEKMKEVD-----AVIGGEGNGGVILPDVHYGRDSLVGIALVL-QLLAA----SGK 357 (445)
T ss_pred HHHHHHHHHcCCEEEEecccHHHHHHHHHhcC-----CeEEEeccCCeecCCccccccHHHHHHHHH-HHHHh----cCC
Confidence 99999999999999999999999999999876 589999999999999999999999999876 99988 899
Q ss_pred CHHHHHHHchhhhccceeEEEeccChhhHhhhHHHHHHHHHhhhhhcccCCccccccCccccccccccCCCCCCcccccC
Q 022948 160 GIGSLIKDLEEPLESIELRMNIISEPRYAKAKGSEAIEEFRKYIEEGRLQGWELDSCGDCWVSEGCLVDSNESPAAIDAR 239 (289)
Q Consensus 160 ~l~~ll~~lp~~~~~~~~~i~~~~~~~~~~~~~~~~m~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~D 239 (289)
+|+++++++|.++.. ..+++|+ |.+ ++++|++|.+..+. .+++.+|
T Consensus 358 ~L~~l~~~~~~~~~~-~~~v~~~----~~~--~~~i~~~l~~~~~~---------------------------~~v~~~D 403 (445)
T cd05803 358 PLSEIVDELPQYYIS-KTKVTIA----GEA--LERLLKKLEAYFKD---------------------------AEASTLD 403 (445)
T ss_pred CHHHHHHhchhhhee-eeeeecc----HHh--HHHHHHHHHHhccc---------------------------CCcccCc
Confidence 999999999976432 2344443 433 46799988765431 2466899
Q ss_pred ceEEEEeecccCCceEEEEecCCCCccEEEEEEeCChhHHHHHHHHH
Q 022948 240 MYRAKVTDEEHGQYGWIHLRQSIHNPNIAVNVQSMVPGGCRSITKSL 286 (289)
Q Consensus 240 Giki~~~~~~~~~~~w~liRpSgTEP~iriy~Ea~~~~~~~~l~~~~ 286 (289)
|+|+.| ++||++||||||||++|||+|+.+++.++++++.+
T Consensus 404 Gik~~~------~~~W~liRpS~teP~~riy~Ea~s~e~a~~l~~~~ 444 (445)
T cd05803 404 GLRLDS------EDSWVHVRPSNTEPIVRIIAEAPTQDEAEALADRF 444 (445)
T ss_pred eEEEec------CCeEEEEeccCCccEEEEEEecCCHHHHHHHHHhh
Confidence 999999 67999999999999999999999999999999876
No 8
>cd03087 PGM_like1 This archaeal PGM-like (phosphoglucomutase-like) protein of unknown function belongs to the alpha-D-phosphohexomutase superfamily which includes several related enzymes that catalyze a reversible intramolecular phosphoryl transfer on their sugar substrates. The alpha-D-phosphohexomutases include several related enzymes that catalyze a reversible intramolecular phosphoryl transfer on their sugar substrates. Members of this superfamily include the phosphoglucomutases (PGM1 and PGM2), phosphoglucosamine mutase (PNGM), phosphoacetylglucosamine mutase (PAGM), the bacterial phosphomannomutase ManB, the bacterial phosphoglucosamine mutase GlmM, and the bifunctional phosphomannomutase/phosphoglucomutase (PMM/PGM). Each of these enzymes has four domains with a centrally located active site formed by four loops, one from each domain. All four domains are included in this alignment model.
Probab=100.00 E-value=2.8e-51 Score=395.10 Aligned_cols=238 Identities=23% Similarity=0.366 Sum_probs=210.4
Q ss_pred CCCCCCCCCCChHHHHHHHHHHHhcCCcEEEEecCCCCeEEEEcCCCcccChhHHHHHHHHHHHhhCCCCeEEEcccCCH
Q 022948 1 MFPNHIPNPEDKTAMALTRAAVLENNADLGVVFDTDVDRSGVVDNKGNPINGDKLIALMSAIVLKEHPGTTIVTDARTSM 80 (289)
Q Consensus 1 ~Fp~~~P~P~~~~~l~~l~~~v~~~~adlGia~D~DgDR~~vvd~~G~~l~~d~~~~Ll~~~~l~~~~~~~vv~t~~ss~ 80 (289)
+||++.|+|. +++++.+.+.|++.+||+|+++||||||++++|++|+++++|++++|+++++++. ++..||.|++||.
T Consensus 201 ~f~~~~p~p~-~~~l~~l~~~v~~~~adlgia~D~DgDR~~~vd~~G~~l~~d~~~~l~a~~ll~~-~~~~vv~~v~ss~ 278 (439)
T cd03087 201 FFPGRPPEPT-PENLSELMELVRATGADLGIAHDGDADRAVFVDEKGRFIDGDKLLALLAKYLLEE-GGGKVVTPVDASM 278 (439)
T ss_pred CCCCCCCCCC-HHHHHHHHHHHHhcCCCEEEEEcCCCceEEEECCCCCEechHHHHHHHHHHHHhc-CCCcEEEeccchH
Confidence 5999999998 8999999999999999999999999999999999999999999999999999987 5558999999999
Q ss_pred HHHHHHHHcCCcEEEeecccHHHHHHHhhcccCCceeeEEeecccceecCCCccCCCHHHHHHHHHHHHHHHHhcCCCCC
Q 022948 81 ALTKFITDRGGNHCLYRVGYRNVIDKGVHLNEDGIETHLMMETSGHGALKENYFLDDGAYMVVKIIIQMVRMKLEGSDEG 160 (289)
Q Consensus 81 ~l~~~a~~~g~~v~~t~vG~k~i~~~~~~~~~~g~~~~~g~E~sg~~~~~~~~~~~Dgi~a~l~ll~e~~~~~~~~~~~~ 160 (289)
+++++|+++|+++++|+||++|++++|.+.+ ++||||+|||++|+++.+++|||+++++++ |+++. . ++
T Consensus 279 ~l~~~a~~~g~~~~~~~~G~k~i~~~m~~~~-----~~~ggE~sgg~~~~~~~~~~Dgi~a~~~ll-e~l~~----~-~~ 347 (439)
T cd03087 279 LVEDVVEEAGGEVIRTPVGDVHVAEEMIENG-----AVFGGEPNGGWIFPDHQLCRDGIMTAALLL-ELLAE----E-KP 347 (439)
T ss_pred HHHHHHHHcCCEEEEEecChHHHHHHHHhcC-----CeEEecCCCCEecCCcCCcCCHHHHHHHHH-HHHhc----C-CC
Confidence 9999999999999999999999999998865 589999999999999999999999999876 99887 6 89
Q ss_pred HHHHHHHchhhhccceeEEEeccChhhHhhhHHHHHHHHHhhhhhcccCCccccccCccccccccccCCCCCCcccccCc
Q 022948 161 IGSLIKDLEEPLESIELRMNIISEPRYAKAKGSEAIEEFRKYIEEGRLQGWELDSCGDCWVSEGCLVDSNESPAAIDARM 240 (289)
Q Consensus 161 l~~ll~~lp~~~~~~~~~i~~~~~~~~~~~~~~~~m~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~DG 240 (289)
|+++++++|+++. ...+++|+ |.. ++++|++|.+..+.. ...++.+||
T Consensus 348 l~~~~~~~~~~~~-~~~~v~~~----~~~--~~~i~~~l~~~~~~~-------------------------~~~i~~~DG 395 (439)
T cd03087 348 LSELLDELPKYPL-LREKVECP----DEK--KEEVMEAVEEELSDA-------------------------DEDVDTIDG 395 (439)
T ss_pred HHHHHHhcccccc-ccccccCC----hHh--HHHHHHHHHHhhhhc-------------------------cCCeeecce
Confidence 9999999987642 23344443 432 468999998754310 024678999
Q ss_pred eEEEEeecccCCceEEEEecCCCCccEEEEEEeCChhHHHHHHHHHhcC
Q 022948 241 YRAKVTDEEHGQYGWIHLRQSIHNPNIAVNVQSMVPGGCRSITKSLRDK 289 (289)
Q Consensus 241 iki~~~~~~~~~~~w~liRpSgTEP~iriy~Ea~~~~~~~~l~~~~~~~ 289 (289)
+|+.| ++||++||||||||++|||+|+.+++.++++++.+.++
T Consensus 396 ~k~~~------~~~WvliRpS~tep~~rvy~Ea~~~~~a~~l~~~~~~~ 438 (439)
T cd03087 396 VRIEY------EDGWVLIRPSGTEPKIRITAEAKTEERAKELLEEGRSK 438 (439)
T ss_pred EEEec------CCcEEEEeccCCccEEEEEEeeCCHHHHHHHHHHHHhh
Confidence 99999 66999999999999999999999999999999998763
No 9
>cd05805 MPG1_transferase GTP-mannose-1-phosphate guanyltransferase (MPG1 transferase), also known as GDP-mannose pyrophosphorylase, is a bifunctional enzyme with both phosphomannose isomerase (PMI) activity and GDP-mannose phosphorylase (GMP) activity. The protein contains an N-terminal NTP transferase domain, an L-beta-H domain, and a C-terminal PGM-like domain that belongs to the alpha-D-phosphohexomutase superfamily. This subfamily is limited to bacteria and archaea. The alpha-D-phosphohexomutases include several related enzymes that catalyze a reversible intramolecular phosphoryl transfer on their sugar substrates. Members of this group appear to lack conserved residues necessary for metal binding and catalytic activity. Other members of this superfamily include the phosphoglucomutases (PGM1 and PGM2), phosphoglucosamine mutase (PNGM), phosphoacetylglucosamine mutase (PAGM), the bacterial phosphomannomutase ManB, the bacterial phosphoglucosamine mutase GlmM, and the bifunctional
Probab=100.00 E-value=5.6e-51 Score=393.21 Aligned_cols=232 Identities=17% Similarity=0.222 Sum_probs=204.3
Q ss_pred CCCCCChHHHHHHHHHHHhcCCcEEEEecCCCCeEEEEcCCCcccChhHHHHHHHHHHHhhCCCCeEEEcccCCHHHHHH
Q 022948 6 IPNPEDKTAMALTRAAVLENNADLGVVFDTDVDRSGVVDNKGNPINGDKLIALMSAIVLKEHPGTTIVTDARTSMALTKF 85 (289)
Q Consensus 6 ~P~P~~~~~l~~l~~~v~~~~adlGia~D~DgDR~~vvd~~G~~l~~d~~~~Ll~~~~l~~~~~~~vv~t~~ss~~l~~~ 85 (289)
+|+| ++++++.+++.|++.+||+|+++||||||++++|++|+++++|++++|+++++++..+...||.|++||.+++++
T Consensus 209 ~~~~-~~~~l~~l~~~v~~~~adlgia~DgDaDR~~vvd~~G~~~~gd~l~~l~a~~ll~~~~~~~vv~~v~ss~~l~~~ 287 (441)
T cd05805 209 TDTE-RQRSLDRLGRIVKALGADFGVIIDPNGERLILVDEAGRVISDDLLTALVSLLVLKSEPGGTVVVPVTAPSVIEQL 287 (441)
T ss_pred CCcc-chhHHHHHHHHHHhCCCCEEEEEcCCCCEEEEECCCCCEEChhHHHHHHHHHHHHhCCCCeEEEEccchHHHHHH
Confidence 4566 589999999999999999999999999999999999999999999999999999855556899999999999999
Q ss_pred HHHcCCcEEEeecccHHHHHHHhhcccCCceeeEEeecccceecCCCccCCCHHHHHHHHHHHHHHHHhcCCCCCHHHHH
Q 022948 86 ITDRGGNHCLYRVGYRNVIDKGVHLNEDGIETHLMMETSGHGALKENYFLDDGAYMVVKIIIQMVRMKLEGSDEGIGSLI 165 (289)
Q Consensus 86 a~~~g~~v~~t~vG~k~i~~~~~~~~~~g~~~~~g~E~sg~~~~~~~~~~~Dgi~a~l~ll~e~~~~~~~~~~~~l~~ll 165 (289)
++++|+++++|+||++|++++|.+ + ++||||+|||++|+++.+++|||+++++++ ||++. ++++|++++
T Consensus 288 a~~~g~~~~~t~vG~~~i~~~m~~-~-----~~~ggE~sG~~~~~~~~~~~Dgi~a~l~ll-e~la~----~~~~l~~l~ 356 (441)
T cd05805 288 AERYGGRVIRTKTSPQALMEAALE-N-----VVLAGDGDGGFIFPEFHPGFDAIAALVKIL-EMLAR----TNISLSQIV 356 (441)
T ss_pred HHHcCCEEEEEeCChHHHHHHHHh-c-----ccccccCCCcEEccccccCchHHHHHHHHH-HHHHh----cCCCHHHHH
Confidence 999999999999999999999988 4 589999999999999999999999999776 99987 899999999
Q ss_pred HHchhhhccceeEEEeccChhhHhhhHHHHHHHHHhhhhhcccCCccccccCccccccccccCCCCCCcccccCceEEEE
Q 022948 166 KDLEEPLESIELRMNIISEPRYAKAKGSEAIEEFRKYIEEGRLQGWELDSCGDCWVSEGCLVDSNESPAAIDARMYRAKV 245 (289)
Q Consensus 166 ~~lp~~~~~~~~~i~~~~~~~~~~~~~~~~m~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~DGiki~~ 245 (289)
+++|++|.. ..+++|+ +.+ ++++|++|.+.... .+++++||+|+.|
T Consensus 357 ~~l~~~~~~-~~~~~~~----~~~--~~~~~~~l~~~~~~---------------------------~~~~~~DGvri~~ 402 (441)
T cd05805 357 DELPRFYVL-HKEVPCP----WEA--KGRVMRRLIEEAPD---------------------------KSIELIDGVKIYE 402 (441)
T ss_pred HhCchhhee-eeEEECC----hHH--hhHHHHHHHHhcCC---------------------------CCceecceeEEec
Confidence 999977643 3355554 332 34688888764431 2456899999999
Q ss_pred eecccCCceEEEEecCCCCccEEEEEEeCChhHHHHHHHHHhcC
Q 022948 246 TDEEHGQYGWIHLRQSIHNPNIAVNVQSMVPGGCRSITKSLRDK 289 (289)
Q Consensus 246 ~~~~~~~~~w~liRpSgTEP~iriy~Ea~~~~~~~~l~~~~~~~ 289 (289)
++||+|||||||||++|||+||++++.++++++.+.++
T Consensus 403 ------~~gW~liRpS~TeP~iri~~Ea~~~~~~~~l~~~~~~~ 440 (441)
T cd05805 403 ------DDGWVLVLPDADEPLCHIYAEGSDQERAEELTEFYVEK 440 (441)
T ss_pred ------CCCEEEEecCCCCCEEEEEEecCCHHHHHHHHHHHHhh
Confidence 67899999999999999999999999999999998764
No 10
>PTZ00150 phosphoglucomutase-2-like protein; Provisional
Probab=100.00 E-value=2.7e-49 Score=392.65 Aligned_cols=261 Identities=18% Similarity=0.172 Sum_probs=213.1
Q ss_pred CCCCC-CCCCCC-hHHHHHHHHHHHhcCCcEEEEecCCCCeEEEEcCCC---cccChhHHHHHHHHHHHhhCC-------
Q 022948 1 MFPNH-IPNPED-KTAMALTRAAVLENNADLGVVFDTDVDRSGVVDNKG---NPINGDKLIALMSAIVLKEHP------- 68 (289)
Q Consensus 1 ~Fp~~-~P~P~~-~~~l~~l~~~v~~~~adlGia~D~DgDR~~vvd~~G---~~l~~d~~~~Ll~~~~l~~~~------- 68 (289)
+||++ +|||++ +++++.+.+.|++.+||+|+++||||||++++|+.| ++++||++++|+++++++.++
T Consensus 268 ~Fp~~~~PnPe~~~~~l~~~~~~v~~~~adlgia~DpDaDR~~vvd~~g~~~~~l~gd~l~aLla~~ll~~~~~~g~~~~ 347 (584)
T PTZ00150 268 EFPTVTFPNPEEGKGALKLSMETAEAHGSTVVLANDPDADRLAVAEKLNNGWKIFTGNELGALLAWWAMKRYRRQGIDKS 347 (584)
T ss_pred CCCCCCCcChhhhHHHHHHHHHHHHHhCCCEEEEeCCCCCceEEEEEcCCceEEcChhHHHHHHHHHHHHhhhhcCCCCC
Confidence 48987 799997 899999999999999999999999999999998765 899999999999999998642
Q ss_pred CCeEEEcccCCHHHHHHHHHcCCcEEEeecccHHHHHHHhhcccCCc-eeeEEeecccceecCCCccCCCHHHHHHHHHH
Q 022948 69 GTTIVTDARTSMALTKFITDRGGNHCLYRVGYRNVIDKGVHLNEDGI-ETHLMMETSGHGALKENYFLDDGAYMVVKIII 147 (289)
Q Consensus 69 ~~~vv~t~~ss~~l~~~a~~~g~~v~~t~vG~k~i~~~~~~~~~~g~-~~~~g~E~sg~~~~~~~~~~~Dgi~a~l~ll~ 147 (289)
+..||.|++||.+++++|+++|+++++|+||||||+++|.+....+. .++||||||||++|+++.+++|||+|+++++
T Consensus 348 ~~~Vv~tv~sS~~l~~ia~~~g~~v~~t~tGfk~I~~~m~~~~~~~~~~~~~ggEeSgG~~~~~~~~~kDgi~aal~il- 426 (584)
T PTZ00150 348 KCFFICTVVSSRMLKKMAEKEGFQYDETLTGFKWIGNKAIELNAENGLTTLFAYEEAIGFMLGTRVRDKDGVTAAAVVA- 426 (584)
T ss_pred CcEEEEehhhhHHHHHHHHHcCCEEEECCCChHHHHHHHHHHHhcCCceEEEEEeccCcccCCCCCCCcHHHHHHHHHH-
Confidence 22599999999999999999999999999999999999987432221 3799999999999999999999999999765
Q ss_pred HHHHHHhcCCCCCHHHHHHHchhhhccce-eEEE-eccChhhHhhhHHHHHHHHHh--hhhhcccCCccccccCcccccc
Q 022948 148 QMVRMKLEGSDEGIGSLIKDLEEPLESIE-LRMN-IISEPRYAKAKGSEAIEEFRK--YIEEGRLQGWELDSCGDCWVSE 223 (289)
Q Consensus 148 e~~~~~~~~~~~~l~~ll~~lp~~~~~~~-~~i~-~~~~~~~~~~~~~~~m~~l~~--~~~~~~~~~~~v~~~~~~~~~~ 223 (289)
||++. ++.+++||+++++++|..|.++. .... +... .. ++.++|..|+. ..+ ..++|.+|+.+.||..+.
T Consensus 427 e~~~~-l~~~g~sL~e~l~~l~~~~G~~~~~~~~~~~~~--~~--~~~~~~~~l~~~~~~~-~~~~g~~v~~~~d~~~~~ 500 (584)
T PTZ00150 427 EMALY-LYERGKTLVEHLESLYKQYGYHFTNNSYYICYD--PS--RIVSIFNDIRNNGSYP-TKLGGYPVTRIRDLTTGY 500 (584)
T ss_pred HHHHH-HHHcCCCHHHHHHHHHHHHCCCccceeeEecCC--HH--HHHHHHHHHhccCCcc-hhhCCeeEEEEEeccccc
Confidence 99653 34489999999999999986333 2221 3311 12 23467788876 333 578999999999987655
Q ss_pred ccccCCCCCCccc---ccCceEEEEeecccCCceEEEEecCCCCccEEEEEEeC
Q 022948 224 GCLVDSNESPAAI---DARMYRAKVTDEEHGQYGWIHLRQSIHNPNIAVNVQSM 274 (289)
Q Consensus 224 ~~~~~~~~~~~~~---~~DGiki~~~~~~~~~~~w~liRpSgTEP~iriy~Ea~ 274 (289)
....+.+. .++. ..||+|+.| ++++|+++|||||||++|+|+|+.
T Consensus 501 ~~~~~~~~-~~lp~~~~~~~lk~~~-----~~g~~~~~RpSGTEPkik~Y~e~~ 548 (584)
T PTZ00150 501 DTATPDGK-PLLPVSASTQMITFYF-----ENGAIITIRGSGTEPKLKWYAELS 548 (584)
T ss_pred ccccCCCc-ccCCCcccCCeEEEEE-----cCCeEEEEEcCCCCCeEEEEEEec
Confidence 55443333 2233 579999999 667899999999999999999994
No 11
>cd05801 PGM_like3 This bacterial PGM-like (phosphoglucomutase-like) protein of unknown function belongs to the alpha-D-phosphohexomutase superfamily. The alpha-D-phosphohexomutases include several related enzymes that catalyze a reversible intramolecular phosphoryl transfer on their sugar substrates. Other members of this superfamily include phosphoglucosamine mutase (PNGM), phosphoacetylglucosamine mutase (PAGM), the bacterial phosphomannomutase ManB, the bacterial phosphoglucosamine mutase GlmM, and the bifunctional phosphomannomutase/phosphoglucomutase (PMM/PGM). Each of these enzymes has four domains with a centrally located active site formed by four loops, one from each domain. All four domains are included in this alignment model.
Probab=100.00 E-value=3.2e-49 Score=387.82 Aligned_cols=254 Identities=15% Similarity=0.173 Sum_probs=204.0
Q ss_pred CCCCCCC--------CCCChHHHHHHHHHHHhcCCcEEEEecCCCCeEEEEcCCCcccChhHHHHHHHHHHHhhCC----
Q 022948 1 MFPNHIP--------NPEDKTAMALTRAAVLENNADLGVVFDTDVDRSGVVDNKGNPINGDKLIALMSAIVLKEHP---- 68 (289)
Q Consensus 1 ~Fp~~~P--------~P~~~~~l~~l~~~v~~~~adlGia~D~DgDR~~vvd~~G~~l~~d~~~~Ll~~~~l~~~~---- 68 (289)
+||+++| ||+.+++++.+.+. ..+||+||++||||||++++|++|++|++|++++|++++++++++
T Consensus 247 ~f~~~~p~~~~~~~~~p~~~~~l~~l~~~--~~~adlGia~DgDaDRl~vvd~~G~~l~gd~~~aLla~~ll~~~~~~~~ 324 (522)
T cd05801 247 TFRFMTLDHDGKIRMDCSSPYAMAGLLKL--KDKFDLAFANDPDADRHGIVTPSAGLMNPNHYLSVAIDYLFTHRPLWNK 324 (522)
T ss_pred CCCCCCCCcccCCCCCCCCHHHHHHHHHh--hcCCCEEEEECCCccceeEEecCCeEECHHHHHHHHHHHHHHhCcccCC
Confidence 4776555 55557888888876 348999999999999999999999999999999999999998754
Q ss_pred CCeEEEcccCCHHHHHHHHHcCCcEEEeecccHHHHHHHhhcccCCceeeEEeecccceecCC-----CccCCCHHHHHH
Q 022948 69 GTTIVTDARTSMALTKFITDRGGNHCLYRVGYRNVIDKGVHLNEDGIETHLMMETSGHGALKE-----NYFLDDGAYMVV 143 (289)
Q Consensus 69 ~~~vv~t~~ss~~l~~~a~~~g~~v~~t~vG~k~i~~~~~~~~~~g~~~~~g~E~sg~~~~~~-----~~~~~Dgi~a~l 143 (289)
+..||.+++||.+++++|+++|+++++|+|||+||.++|++.+ ++||||+|||++|++ +.+++|||++++
T Consensus 325 ~~~vv~tv~sS~~l~~ia~~~g~~~~~t~vG~k~i~~~m~~~~-----~~~ggEeSgg~~~~~~~~~~~~~~~Dgi~a~l 399 (522)
T cd05801 325 SAGVGKTLVSSSMIDRVAAALGRKLYEVPVGFKWFVDGLLDGS-----LGFGGEESAGASFLRRDGTVWTTDKDGIIMCL 399 (522)
T ss_pred CceEEEEcchHHHHHHHHHHcCCeeeecCccHHHHHHHHhcCC-----eEEEEeccCceEeccCCCCCcccCchHHHHHH
Confidence 4579999999999999999999999999999999999999865 589999999999988 788999999999
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHHchhhh-ccceeEEEeccChhhHhhhHHHHHHHHHhh-hhhcccCCccccccCcccc
Q 022948 144 KIIIQMVRMKLEGSDEGIGSLIKDLEEPL-ESIELRMNIISEPRYAKAKGSEAIEEFRKY-IEEGRLQGWELDSCGDCWV 221 (289)
Q Consensus 144 ~ll~e~~~~~~~~~~~~l~~ll~~lp~~~-~~~~~~i~~~~~~~~~~~~~~~~m~~l~~~-~~~~~~~~~~v~~~~~~~~ 221 (289)
+++ ||++. ++++|+++++++|++| .+...+++++ |+|.. ++. |.+++.+ .....+.+.++..+-++..
T Consensus 400 ~~l-e~la~----~~~~L~~~l~~l~~~~g~~~~~~~~v~--~~~~~--k~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 469 (522)
T cd05801 400 LAA-EILAV----TGKDPGQLYQELTERFGEPYYARIDAP--ATPEQ--KAR-LKKLSPEQVTATELAGDPILAKLTRAP 469 (522)
T ss_pred HHH-HHHHH----hCCCHHHHHHHHHHHHCcCeeeccCCC--ChHHH--HHH-HHHHhccCCCchHhCCCceEEEEeccc
Confidence 776 99987 8999999999999877 4445555554 44533 233 3344321 1111344444433322210
Q ss_pred ccccccCCCCCCcccccCceEEEEeecccCCceEEEEecCCCCccEEEEEEe-CChhHHHHHHHHHhc
Q 022948 222 SEGCLVDSNESPAAIDARMYRAKVTDEEHGQYGWIHLRQSIHNPNIAVNVQS-MVPGGCRSITKSLRD 288 (289)
Q Consensus 222 ~~~~~~~~~~~~~~~~~DGiki~~~~~~~~~~~w~liRpSgTEP~iriy~Ea-~~~~~~~~l~~~~~~ 288 (289)
..++++||+|+.| ++||++||||||||++|||+|+ .+++.++++++.+.+
T Consensus 470 -----------~~~~~~DGvk~~~------~~gWvliRpSgTEP~iriy~Ea~~~~~~~~~l~~~~~~ 520 (522)
T cd05801 470 -----------GNGASIGGLKVTT------ANGWFAARPSGTEDVYKIYAESFLSEEHLKKIQKEAQE 520 (522)
T ss_pred -----------CCCccCceEEEEE------cCeEEEEEccCCCceEEEEEEecCCHHHHHHHHHHHHH
Confidence 1245799999999 6789999999999999999999 699999999988764
No 12
>cd03085 PGM1 Phosphoglucomutase 1 (PGM1) catalyzes the bidirectional interconversion of glucose-1-phosphate (G-1-P) and glucose-6-phosphate (G-6-P) via a glucose 1,6-diphosphate intermediate, an important metabolic step in prokaryotes and eukaryotes. In one direction, G-1-P produced from sucrose catabolism is converted to G-6-P, the first intermediate in glycolysis. In the other direction, conversion of G-6-P to G-1-P generates a substrate for synthesis of UDP-glucose which is required for synthesis of a variety of cellular constituents including cell wall polymers and glycoproteins. The PGM1 family also includes a non-enzymatic PGM-related protein (PGM-RP) thought to play a structural role in eukaryotes, as well as pp63/parafusin, a phosphoglycoprotein that plays an important role in calcium-regulated exocytosis in ciliated protozoans. PGM1 belongs to the alpha-D-phosphohexomutase superfamily which includes several related enzymes that catalyze a reversible intramolecular phosphoryl t
Probab=100.00 E-value=7.4e-49 Score=386.16 Aligned_cols=251 Identities=15% Similarity=0.125 Sum_probs=210.3
Q ss_pred CCCCCCCCCCChHHHHHHHHHHHhcCCcEEEEecCCCCeEEEEcCCCcccChhHHHHHHHHHHHhh----CCC-CeEEEc
Q 022948 1 MFPNHIPNPEDKTAMALTRAAVLENNADLGVVFDTDVDRSGVVDNKGNPINGDKLIALMSAIVLKE----HPG-TTIVTD 75 (289)
Q Consensus 1 ~Fp~~~P~P~~~~~l~~l~~~v~~~~adlGia~D~DgDR~~vvd~~G~~l~~d~~~~Ll~~~~l~~----~~~-~~vv~t 75 (289)
+||+++|||+ ++++..|.+.|++.+||+|+++||||||++++|+ |+++++++++++++.+++.+ .++ ..||.|
T Consensus 246 ~Fp~~~P~P~-~~~l~~L~~~V~~~~ADlGia~DgDaDRl~vvd~-G~~i~~d~~lall~~~ll~~~~~~~~~~~~VV~t 323 (548)
T cd03085 246 DFGGGHPDPN-LTYAKDLVELMKSGEPDFGAASDGDGDRNMILGK-GFFVTPSDSVAVIAANAKLIPYFYKGGLKGVARS 323 (548)
T ss_pred CCCCCCCCCc-HHHHHHHHHHHhccCCCEEEEECCCCCceEEEec-CEEecCCHHHHHHHHHHHHhhhhhhcCCcEEEEe
Confidence 5999999999 7999999999999999999999999999999999 99999999999999998853 122 379999
Q ss_pred ccCCHHHHHHHHHcCCcEEEeecccHHHHHHHhhcccCCceeeEEeecccceecCCCccCCCHHHHHHHHHHHHHHHHhc
Q 022948 76 ARTSMALTKFITDRGGNHCLYRVGYRNVIDKGVHLNEDGIETHLMMETSGHGALKENYFLDDGAYMVVKIIIQMVRMKLE 155 (289)
Q Consensus 76 ~~ss~~l~~~a~~~g~~v~~t~vG~k~i~~~~~~~~~~g~~~~~g~E~sg~~~~~~~~~~~Dgi~a~l~ll~e~~~~~~~ 155 (289)
++||.+++++|+++|+++++|+|||+||.++|.+.+ ++||||+|||++ +++.+++|||+|+++++ ||++.
T Consensus 324 v~sS~~le~ia~~~G~~v~~t~vG~k~I~~~m~~~~-----~~~GgEeSgg~~-~~~~~~kDGi~aal~ll-ella~--- 393 (548)
T cd03085 324 MPTSGALDRVAKKLGIPLFETPTGWKFFGNLMDAGK-----LSLCGEESFGTG-SDHIREKDGLWAVLAWL-SILAH--- 393 (548)
T ss_pred CccHHHHHHHHHHcCCcEEEcCchHHHHHHHHhcCC-----ceEEEeccCCcc-CCCccCCcHHHHHHHHH-HHHHH---
Confidence 999999999999999999999999999999998864 589999999996 99999999999999776 99998
Q ss_pred CCCCCHHHHHHHchhhhccce-eEEEeccChhhHhhhHHHHHHHHHhhhhh--cc----cCCccccccCccccccccccC
Q 022948 156 GSDEGIGSLIKDLEEPLESIE-LRMNIISEPRYAKAKGSEAIEEFRKYIEE--GR----LQGWELDSCGDCWVSEGCLVD 228 (289)
Q Consensus 156 ~~~~~l~~ll~~lp~~~~~~~-~~i~~~~~~~~~~~~~~~~m~~l~~~~~~--~~----~~~~~v~~~~~~~~~~~~~~~ 228 (289)
+++||++++++||..|.+.. .+..... |+|.+ ++++|++|+..... .. +.+.+|+.+.|+... ...
T Consensus 394 -~g~tLsell~~i~~~~G~~~~~~~~~~~-~~~~~--k~~im~~l~~~~~~~~~~~~~~~~~~~v~~~~d~~~~---~~~ 466 (548)
T cd03085 394 -RNVSVEDIVKEHWQKYGRNFYTRYDYEE-VDSEA--ANKMMDHLRALVSDLPGVGKSGDKGYKVAKADDFSYT---DPV 466 (548)
T ss_pred -HCcCHHHHHHHHHHHhCcceeecccccC-CCHHH--HHHHHHHHHhccccCccccccccCCceEEEEecceec---cCC
Confidence 89999999999998775433 3333332 44554 57899999863211 22 778888877777521 000
Q ss_pred CCCCCcccccCceEEEEeecccCCceEEEEecCCCC---ccEEEEEEeCChhH
Q 022948 229 SNESPAAIDARMYRAKVTDEEHGQYGWIHLRQSIHN---PNIAVNVQSMVPGG 278 (289)
Q Consensus 229 ~~~~~~~~~~DGiki~~~~~~~~~~~w~liRpSgTE---P~iriy~Ea~~~~~ 278 (289)
+..+.++||+|+.| ++++|++||||||| |++|+|+|+.+++-
T Consensus 467 ---~~~~~~~dglk~~~-----~~g~wi~iRpSGTE~~~Pkir~Y~E~~~~~~ 511 (548)
T cd03085 467 ---DGSVSKKQGLRIIF-----EDGSRIIFRLSGTGSSGATIRLYIESYEKDP 511 (548)
T ss_pred ---CCCcChhceEEEEE-----CCCeEEEEECCCCCCCCceEEEEEEEecCCh
Confidence 11467899999999 66789999999999 89999999988765
No 13
>PRK07564 phosphoglucomutase; Validated
Probab=100.00 E-value=1.7e-48 Score=384.24 Aligned_cols=252 Identities=16% Similarity=0.169 Sum_probs=198.8
Q ss_pred CCCCCCCCCChHHHHHHHHHHHhcCCcEEEEecCCCCeEEEEcCCCcccChhHHHHHHHHHHHhhCC----CCeEEEccc
Q 022948 2 FPNHIPNPEDKTAMALTRAAVLENNADLGVVFDTDVDRSGVVDNKGNPINGDKLIALMSAIVLKEHP----GTTIVTDAR 77 (289)
Q Consensus 2 Fp~~~P~P~~~~~l~~l~~~v~~~~adlGia~D~DgDR~~vvd~~G~~l~~d~~~~Ll~~~~l~~~~----~~~vv~t~~ 77 (289)
||+++|||+.++++..+.+ ++.+||+|+++||||||++++|+ |+++++|++++|++.+++++.+ +..||.|++
T Consensus 272 ~~~~~p~P~~~~~L~~l~~--~~~~adlGia~DgDgDRl~vvd~-G~~i~~d~~~alla~~ll~~~~~~~~~~~Vv~~v~ 348 (543)
T PRK07564 272 DGKIRMDCSSPYAMAGLLA--LKDAFDLAFANDPDGDRHGIVTP-GGLMNPNHYLAVAIAYLFHHRPGWRAGAGVGKTLV 348 (543)
T ss_pred cCCcCCCCChHHHHHHHHh--hccCCCEEEEECCCCCceeEEec-CeeechhHHHHHHHHHHHHhCcCCCCCceEEEEec
Confidence 5678899987777666554 57899999999999999999999 9999999999999999987532 337999999
Q ss_pred CCHHHHHHHHHcCCcEEEeecccHHHHHHHhhcccCCceeeEEeecccceecCC-----CccCCCHHHHHHHHHHHHHHH
Q 022948 78 TSMALTKFITDRGGNHCLYRVGYRNVIDKGVHLNEDGIETHLMMETSGHGALKE-----NYFLDDGAYMVVKIIIQMVRM 152 (289)
Q Consensus 78 ss~~l~~~a~~~g~~v~~t~vG~k~i~~~~~~~~~~g~~~~~g~E~sg~~~~~~-----~~~~~Dgi~a~l~ll~e~~~~ 152 (289)
||.+++++|+++|+++++|+|||+|++++|.+.+ ++||||+|||++|.. +.+++|||+|+++++ ||++.
T Consensus 349 sS~~l~~ia~~~g~~v~~t~vG~k~i~~~m~~~~-----~~~ggEeSgg~~~~~~~~~~~~~~~Dgi~a~l~il-e~la~ 422 (543)
T PRK07564 349 SSAMIDRVAAKLGRKLYEVPVGFKWFVNGLDDGS-----LGFGGEESAGASFLRRDGSVWTTDKDGLIAVLLAA-EILAV 422 (543)
T ss_pred chHHHHHHHHHhCCeeeecchHHHHHHHHHhcCc-----eEEEecCcCCeeecccCCCCccccchHHHHHHHHH-HHHHH
Confidence 9999999999999999999999999999999864 689999999997643 688999999999776 99987
Q ss_pred HhcCCCCCHHHHHHHchhhhcc-ceeEEEeccChhhHhhhHHHHHHHHHhhhhh-cccCCccccccCccccccccccCCC
Q 022948 153 KLEGSDEGIGSLIKDLEEPLES-IELRMNIISEPRYAKAKGSEAIEEFRKYIEE-GRLQGWELDSCGDCWVSEGCLVDSN 230 (289)
Q Consensus 153 ~~~~~~~~l~~ll~~lp~~~~~-~~~~i~~~~~~~~~~~~~~~~m~~l~~~~~~-~~~~~~~v~~~~~~~~~~~~~~~~~ 230 (289)
++++|+++++++|..|.+ ++.++.++ |+|.. + ..|++|.+.... ..+++.++... +++.
T Consensus 423 ----~~~~L~ell~~l~~~~g~~~~~~~~~~--~~~~~--k-~~~~~l~~~~~~~~~~~~~~~~~~----------~~~~ 483 (543)
T PRK07564 423 ----TGKSPSEIYRELWARFGRPYYSRHDAP--ATPEQ--K-AALRKLSPELVGATELAGDPIDAS----------LTEA 483 (543)
T ss_pred ----hCCCHHHHHHHHHHHhCCceEEEecCC--ccHHH--H-HHHHHHhccCCCchhhCCcceEEE----------EecC
Confidence 899999999999986643 24455544 44543 2 247888654321 23444322100 0000
Q ss_pred CCCcccccCceEEEEeecccCCceEEEEecCCCCccEEEEEEe-CChhHHHHHHHHHhc
Q 022948 231 ESPAAIDARMYRAKVTDEEHGQYGWIHLRQSIHNPNIAVNVQS-MVPGGCRSITKSLRD 288 (289)
Q Consensus 231 ~~~~~~~~DGiki~~~~~~~~~~~w~liRpSgTEP~iriy~Ea-~~~~~~~~l~~~~~~ 288 (289)
... .+.+||+|+.| ++||++||||||||++|||+|+ .+++.++++++.+.+
T Consensus 484 ~~~-~~~~DGlki~~------~~gWvlvRpSgTEP~iriy~Ea~~~~~~~~~l~~~~~~ 535 (543)
T PRK07564 484 PGN-GAAIGGLKVVT------ENGWFAARPSGTETTYKIYAESFEGDEHLHQIQKEAQE 535 (543)
T ss_pred cCC-cccCCeEEEEE------cCCEEEEEccCCCCeEEEEEEecCCHHHHHHHHHHHHH
Confidence 000 02589999999 6779999999999999999999 688999998877653
No 14
>COG1109 {ManB} Phosphomannomutase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1e-47 Score=372.47 Aligned_cols=238 Identities=26% Similarity=0.389 Sum_probs=204.1
Q ss_pred CCCCCCCCCCChHHHHHHHHHHHhcCCcEEEEecCCCCeEEEEcCCCcccChhHHHHHHHHHHHhhCCCCeEEEcccCCH
Q 022948 1 MFPNHIPNPEDKTAMALTRAAVLENNADLGVVFDTDVDRSGVVDNKGNPINGDKLIALMSAIVLKEHPGTTIVTDARTSM 80 (289)
Q Consensus 1 ~Fp~~~P~P~~~~~l~~l~~~v~~~~adlGia~D~DgDR~~vvd~~G~~l~~d~~~~Ll~~~~l~~~~~~~vv~t~~ss~ 80 (289)
.||++.|||+++. +..+.+.+++.+||+|++|||||||++++|++|++++||++++|++.++++......||.|++||.
T Consensus 215 ~fp~~~p~p~~~~-~~~l~~~v~~~~aDlgia~DgDaDR~~~vd~~G~~~~Gd~i~~lla~~l~~~~~~~~vV~tv~ss~ 293 (464)
T COG1109 215 LFPNINPNPGETE-LLDLAKAVKEHGADLGIAFDGDADRLIVVDERGNFVDGDQILALLAKYLLEKGKLPTVVTTVMSSL 293 (464)
T ss_pred CCCCCCCCCCCcc-HHHHHHHHHhcCCCEEEEecCCCceEEEEcCCCCEeCccHHHHHHHHHHHhcCCCCeEEEecccch
Confidence 5999999999655 448899999999999999999999999999999999999999999999998643327999999999
Q ss_pred HHHHHHHHcCCcEEEeecccHHHHHHHhhcccCCceeeEEeecccceecCCCccCCCHHHHHHHHHHHHHHHHhcCCCCC
Q 022948 81 ALTKFITDRGGNHCLYRVGYRNVIDKGVHLNEDGIETHLMMETSGHGALKENYFLDDGAYMVVKIIIQMVRMKLEGSDEG 160 (289)
Q Consensus 81 ~l~~~a~~~g~~v~~t~vG~k~i~~~~~~~~~~g~~~~~g~E~sg~~~~~~~~~~~Dgi~a~l~ll~e~~~~~~~~~~~~ 160 (289)
.++++++.+|+++++|+||++||.++|++.++ +||||+|||++|+++.+++||++++++++ +|++. .+++
T Consensus 294 ~~~~i~~~~g~~~~~t~vG~~~i~~~~~~~~~-----~~g~E~sg~~~~~~~~~~~Dgi~aal~il-el~~~----~~~~ 363 (464)
T COG1109 294 ALEKIAKKLGGKVVRTKVGDKYIAEKMRENGA-----VFGGEESGHIIFPDHVRTGDGLLAALLVL-ELLAE----SGKS 363 (464)
T ss_pred hHHHHHHHcCCeEEEecCchHHHHHHHHhcCC-----eEEEcccCCEEECCCCcCCcHHHHHHHHH-HHHHH----hCCC
Confidence 99999999999999999999999999999874 89999999999999999999999999776 99988 6779
Q ss_pred HHHHHHH-chhhhccceeEEEeccChhhHhhhHHHHHHHHHhhhhhcccCCccccccCccccccccccCCCCCCcccccC
Q 022948 161 IGSLIKD-LEEPLESIELRMNIISEPRYAKAKGSEAIEEFRKYIEEGRLQGWELDSCGDCWVSEGCLVDSNESPAAIDAR 239 (289)
Q Consensus 161 l~~ll~~-lp~~~~~~~~~i~~~~~~~~~~~~~~~~m~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~D 239 (289)
+++++.. +|+++.+...+++|..+ .+ ..+|+++.+..+.. ..+..+|
T Consensus 364 lsel~~~~~~~~~~~~~~~~~~~~~---~~---~~~~~~~~~~~~~~--------------------------~~~~~id 411 (464)
T COG1109 364 LSELLAELLPKYPQSVEINVRVTDE---GK---AEVLEKLLEELREA--------------------------KKVDTID 411 (464)
T ss_pred HHHHHHhhccccCCcceEeEEEccc---hh---hhHHHHHHHhCccc--------------------------ceeeeee
Confidence 9999999 88776446677777642 11 14566665544421 1356789
Q ss_pred ceEEEEeecccCCceEE-EEecCCCCccEEEEEEeCChhHHHHHHHHHh
Q 022948 240 MYRAKVTDEEHGQYGWI-HLRQSIHNPNIAVNVQSMVPGGCRSITKSLR 287 (289)
Q Consensus 240 Giki~~~~~~~~~~~w~-liRpSgTEP~iriy~Ea~~~~~~~~l~~~~~ 287 (289)
|+|+.+ ++||. +||||||||++|||+|+.+++.++++++.+.
T Consensus 412 gv~~~~------~~g~~~lvRpSGTEP~lrvy~Ea~~~~~~~~~~~~~~ 454 (464)
T COG1109 412 GVKVEL------EDGGRVLVRPSGTEPLIRVYVEAKDEELAEELAEEIA 454 (464)
T ss_pred eEEEEe------CCCcEEEEEeCCCceEEEEEEEECCHHHHHHHHHHHH
Confidence 999999 56655 9999999999999999999999998888765
No 15
>TIGR01132 pgm phosphoglucomutase, alpha-D-glucose phosphate-specific. This enzyme interconverts alpha-D-glucose-1-P and alpha-D-glucose-6-P.
Probab=100.00 E-value=3.1e-47 Score=375.28 Aligned_cols=253 Identities=17% Similarity=0.182 Sum_probs=199.0
Q ss_pred CCCCCCCCCC--------ChHHHHHHHHHHHhcCCcEEEEecCCCCeEEEEcCCCcccChhHHHHHHHHHHHhhCC---C
Q 022948 1 MFPNHIPNPE--------DKTAMALTRAAVLENNADLGVVFDTDVDRSGVVDNKGNPINGDKLIALMSAIVLKEHP---G 69 (289)
Q Consensus 1 ~Fp~~~P~P~--------~~~~l~~l~~~v~~~~adlGia~D~DgDR~~vvd~~G~~l~~d~~~~Ll~~~~l~~~~---~ 69 (289)
.||+++|+|+ .+++++.+.+ ++.+||+|+++||||||++++|++| ++++|++++|+++++++.++ +
T Consensus 264 ~f~~~~pd~~~~~~~~~~~~e~l~~l~~--~~~~aDlGia~DgDaDR~~vvd~~g-~i~gd~~~aLla~~ll~~~~~~~~ 340 (543)
T TIGR01132 264 TFRFMTLDKDGKIRMDCSSPYAMAGLLA--LRDKYDLAFGNDPDYDRHGIVTPAG-LMNPNHYLAVAINYLFQHRPQWGG 340 (543)
T ss_pred CCCCCCCCcccccCCCCCCHHHHHHHhh--cccCCCEEEEeCCCCCCeeEEecCc-eeCHHHHHHHHHHHHHHhCcccCC
Confidence 4777666422 2456666555 5889999999999999999999995 69999999999999998753 3
Q ss_pred -CeEEEcccCCHHHHHHHHHcCCcEEEeecccHHHHHHHhhcccCCceeeEEeecccceecCC-----CccCCCHHHHHH
Q 022948 70 -TTIVTDARTSMALTKFITDRGGNHCLYRVGYRNVIDKGVHLNEDGIETHLMMETSGHGALKE-----NYFLDDGAYMVV 143 (289)
Q Consensus 70 -~~vv~t~~ss~~l~~~a~~~g~~v~~t~vG~k~i~~~~~~~~~~g~~~~~g~E~sg~~~~~~-----~~~~~Dgi~a~l 143 (289)
..|+.|++||.+++++|+++|+++++|+|||+||+++|.+.+ ++||||+|||++|+. +.+++|||+|++
T Consensus 341 ~~~Vv~tv~sS~~l~~ia~~~g~~v~~t~vG~k~i~~~m~~~~-----~~~ggEeSgg~~~~~~~~~~~~~~~Dgi~a~l 415 (543)
T TIGR01132 341 DVAVGKTLVSSAMIDRVVADLGRQLVEVPVGFKWFVDGLFDGS-----FGFGGEESAGASFLRFDGTPWSTDKDGIIMCL 415 (543)
T ss_pred CceEEEEeccHHHHHHHHHHcCCceeecCccHHHHHHHHhcCC-----eEEEEeccCceEecccCCCCcccCcHHHHHHH
Confidence 258889999999999999999999999999999999999865 689999999999965 788999999999
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHHchhhhccce-eEEEeccChhhHhhhHHHHHHHHHhhhh-hcccCCccccccCcccc
Q 022948 144 KIIIQMVRMKLEGSDEGIGSLIKDLEEPLESIE-LRMNIISEPRYAKAKGSEAIEEFRKYIE-EGRLQGWELDSCGDCWV 221 (289)
Q Consensus 144 ~ll~e~~~~~~~~~~~~l~~ll~~lp~~~~~~~-~~i~~~~~~~~~~~~~~~~m~~l~~~~~-~~~~~~~~v~~~~~~~~ 221 (289)
+++ |+++. +++||+++++++|..|...+ .++.++ |+|.. + ..|++|.++.. ...+++.+++.+..
T Consensus 416 ~il-e~la~----~~~~L~~ll~~lp~~~~~~~~~~~~~~--~~~~~--k-~~~~~l~~~~~~~~~~~~~~~~~~~~--- 482 (543)
T TIGR01132 416 LAA-EITAV----TGKNPQQHYNELAAKFGAPSYNRIQAP--ATSAQ--K-ARLKKLSPEMVSATTLAGDPITARLT--- 482 (543)
T ss_pred HHH-HHHHH----hCCCHHHHHHHHHHHhCCceEEEEecC--ChHHH--H-HHHHHHhccCCChHHhCCceeEEEEe---
Confidence 776 99998 79999999999997774323 345444 54543 2 24477765321 12345544432100
Q ss_pred ccccccCCCCCCcccccCceEEEEeecccCCceEEEEecCCCCccEEEEEEe-CChhHHHHHHHHHhc
Q 022948 222 SEGCLVDSNESPAAIDARMYRAKVTDEEHGQYGWIHLRQSIHNPNIAVNVQS-MVPGGCRSITKSLRD 288 (289)
Q Consensus 222 ~~~~~~~~~~~~~~~~~DGiki~~~~~~~~~~~w~liRpSgTEP~iriy~Ea-~~~~~~~~l~~~~~~ 288 (289)
.....++++||+|+.| ++||+|||||||||++|||+|| .+++.++++++++.+
T Consensus 483 --------~~~~~~~~~DGvki~~------~~gWvliRpSgTEP~irvy~Ea~~~~~~~~~l~~~~~~ 536 (543)
T TIGR01132 483 --------AAPGNGAAIGGLKVTT------DNGWFAARPSGTEDVYKIYCESFKGEEHLKQIEKEAVE 536 (543)
T ss_pred --------ccCCCCccCCeEEEEE------cCcEEEEecCCCCceEEEEEEecCCHHHHHHHHHHHHH
Confidence 0012355799999999 6789999999999999999999 699999999988764
No 16
>cd05799 PGM2 This CD includes PGM2 (phosphoglucomutase 2) and PGM2L1 (phosphoglucomutase 2-like 1). The mammalian PGM2 is thought to be a phosphopentomutase that catalyzes the conversion of the nucleoside breakdown products, ribose-1-phosphate and deoxyribose-1-phosphate to the corresponding 5-phosphopentoses. PGM2L1 is thought to catalyze the 1,3-bisphosphoglycerate-dependent synthesis of glucose 1,6-bisphosphate and other aldose-bisphosphates that serve as cofactors for several sugar phosphomutases and possibly also as regulators of glycolytic enzymes. PGM2 and PGM2L1 belong to the alpha-D-phosphohexomutase superfamily which includes several related enzymes that catalyze a reversible intramolecular phosphoryl transfer on their sugar substrates. Other members of this superfamily include phosphoglucosamine mutase (PNGM), phosphoacetylglucosamine mutase (PAGM), the bacterial phosphomannomutase ManB, the bacterial phosphoglucosamine mutase GlmM, and the bifunctional phosphomannomutase/ph
Probab=100.00 E-value=7.8e-47 Score=368.58 Aligned_cols=241 Identities=18% Similarity=0.194 Sum_probs=195.9
Q ss_pred CCCC-CCCCCCChHHHHHHHHHHHhcCCcEEEEecCCCCeEEEEcC----CCcccChhHHHHHHHHHHHhhC-------C
Q 022948 1 MFPN-HIPNPEDKTAMALTRAAVLENNADLGVVFDTDVDRSGVVDN----KGNPINGDKLIALMSAIVLKEH-------P 68 (289)
Q Consensus 1 ~Fp~-~~P~P~~~~~l~~l~~~v~~~~adlGia~D~DgDR~~vvd~----~G~~l~~d~~~~Ll~~~~l~~~-------~ 68 (289)
+||+ +.|||+.+++++.+.+.|++.+||+|+++||||||+.++|+ +|+++++|++++|+++++++.+ +
T Consensus 226 ~F~~~~~p~p~~~~~l~~l~~~v~~~~ad~Gia~D~DgDR~~vvd~~~~~~g~~~~~d~l~aL~a~~ll~~~~~~~~~~~ 305 (487)
T cd05799 226 DFPTVKFPNPEEPGALDLAIELAKKVGADLILATDPDADRLGVAVKDKDGEWRLLTGNEIGALLADYLLEQRKEKGKLPK 305 (487)
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHhCCCEEEEeCCCCCeEEEEEEcCCCCEEEECHHHHHHHHHHHHHHhHhhccCCCC
Confidence 4897 48999989999999999999999999999999999999994 4899999999999999999875 4
Q ss_pred CCeEEEcccCCHHHHHHHHHcCCcEEEeecccHHHHHHHhhcccCCceeeEEeecccceecCCCccCCCHHHHHHHHHHH
Q 022948 69 GTTIVTDARTSMALTKFITDRGGNHCLYRVGYRNVIDKGVHLNEDGIETHLMMETSGHGALKENYFLDDGAYMVVKIIIQ 148 (289)
Q Consensus 69 ~~~vv~t~~ss~~l~~~a~~~g~~v~~t~vG~k~i~~~~~~~~~~g~~~~~g~E~sg~~~~~~~~~~~Dgi~a~l~ll~e 148 (289)
+..||+|+.||.+++++|+++|+++++||||++|++++|.+....+.+++||||+|||++|+++++++|||+++++++ |
T Consensus 306 ~~~vV~~v~sS~~i~~ia~~~g~~v~~t~~G~~~i~~~m~~~~~~~~~~~~ggE~sgg~~~~~~~~~~Dgi~a~~~ll-e 384 (487)
T cd05799 306 NPVIVKTIVSSELLRKIAKKYGVKVEETLTGFKWIGNKIEELESGGKKFLFGFEESIGYLVGPFVRDKDGISAAALLA-E 384 (487)
T ss_pred CcEEEEeehhHHHHHHHHHHcCCeEEECCCCchHHHHHHHHHhccCceEEEEEeccceeeeCCCCCCchHHHHHHHHH-H
Confidence 446999999999999999999999999999999999999876433334799999999999999999999999999776 9
Q ss_pred HHHHHhcCCCCCHHHHHHHchhhhcc---ceeEEEeccChhhHhhhHHHHHHHHHhhhhhcccCCccccccCcccccccc
Q 022948 149 MVRMKLEGSDEGIGSLIKDLEEPLES---IELRMNIISEPRYAKAKGSEAIEEFRKYIEEGRLQGWELDSCGDCWVSEGC 225 (289)
Q Consensus 149 ~~~~~~~~~~~~l~~ll~~lp~~~~~---~~~~i~~~~~~~~~~~~~~~~m~~l~~~~~~~~~~~~~v~~~~~~~~~~~~ 225 (289)
|++.+ +.++++|+++++++|..|.. ...+++|+.+ +|.+ +.+++|++|. +
T Consensus 385 ~la~~-~~~~~~Ls~l~~~l~~~y~~~~~~~~~i~~~~~-~~~~-~~~~v~~~l~----~-------------------- 437 (487)
T cd05799 385 MAAYL-KAQGKTLLDRLDELYEKYGYYKEKTISITFEGK-EGPE-KIKAIMDRLR----N-------------------- 437 (487)
T ss_pred HHHHH-HHcCCCHHHHHHHHHHHhCceEEeeeeEEEeCC-CCHH-HHHHHHHHHh----c--------------------
Confidence 99852 22688999999999986632 1224555321 2432 1234554442 1
Q ss_pred ccCCCCCCcccccCceEEEEeecccCCceEEEEecCCCCccEEEEEEeCC---hhHHHHHHHH
Q 022948 226 LVDSNESPAAIDARMYRAKVTDEEHGQYGWIHLRQSIHNPNIAVNVQSMV---PGGCRSITKS 285 (289)
Q Consensus 226 ~~~~~~~~~~~~~DGiki~~~~~~~~~~~w~liRpSgTEP~iriy~Ea~~---~~~~~~l~~~ 285 (289)
+ . ||+|+.| ++++|+|||||||||++|||+|+.+ ...+++..+.
T Consensus 438 --------~--~-DGvki~~-----~dg~WvliRpS~teP~~riy~Ea~~~~~~~~~~~~~~~ 484 (487)
T cd05799 438 --------N--P-NVLTFYL-----EDGSRVTVRPSGTEPKIKFYIEVVGKKTLEEAEKKLDA 484 (487)
T ss_pred --------c--C-CEEEEEE-----cCCEEEEEEcCCCCceEEEEEEeeccccHHHHHHHHHH
Confidence 0 1 9999999 4447999999999999999999988 4444444443
No 17
>PRK10887 glmM phosphoglucosamine mutase; Provisional
Probab=100.00 E-value=8e-47 Score=364.47 Aligned_cols=221 Identities=24% Similarity=0.277 Sum_probs=189.0
Q ss_pred hHHHHHHHHHHHhcCCcEEEEecCCCCeEEEEcCCCcccChhHHHHHHHHHHHhhCC-CCeEEEcccCCHHHHHHHHHcC
Q 022948 12 KTAMALTRAAVLENNADLGVVFDTDVDRSGVVDNKGNPINGDKLIALMSAIVLKEHP-GTTIVTDARTSMALTKFITDRG 90 (289)
Q Consensus 12 ~~~l~~l~~~v~~~~adlGia~D~DgDR~~vvd~~G~~l~~d~~~~Ll~~~~l~~~~-~~~vv~t~~ss~~l~~~a~~~g 90 (289)
+.+++.+.+.|++.+||+|++|||||||++++|++|+++++|++++|++.++++.++ .+.||.|++||.+++++|+++|
T Consensus 216 ~~~l~~l~~~v~~~~adlGia~D~DgDRl~~vd~~G~~i~~d~l~~l~~~~ll~~~~~~~~vv~~v~ss~~~~~~a~~~g 295 (443)
T PRK10887 216 ATDPEALQAAVLAEKADLGIAFDGDGDRVIMVDHLGNLVDGDQLLYIIARDRLRRGQLRGGVVGTLMSNMGLELALKQLG 295 (443)
T ss_pred CCCHHHHHHHHHhcCCCeeeEECCCCceEEEECCCCcEeCHHHHHHHHHHHHHHhCCCCCcEEEEeccchHHHHHHHHcC
Confidence 468999999999999999999999999999999999999999999999999998764 4479999999999999999999
Q ss_pred CcEEEeecccHHHHHHHhhcccCCceeeEEeecccceecCCCccCCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHchh
Q 022948 91 GNHCLYRVGYRNVIDKGVHLNEDGIETHLMMETSGHGALKENYFLDDGAYMVVKIIIQMVRMKLEGSDEGIGSLIKDLEE 170 (289)
Q Consensus 91 ~~v~~t~vG~k~i~~~~~~~~~~g~~~~~g~E~sg~~~~~~~~~~~Dgi~a~l~ll~e~~~~~~~~~~~~l~~ll~~lp~ 170 (289)
+++++||||++|++++|.+.+ ++||||+|||++|+++++++|||+++++++ |+++. ++++|+++++++|.
T Consensus 296 ~~v~~t~vG~~~i~~~m~~~~-----~~~ggE~sg~~~~~~~~~~~Dgi~a~l~il-e~la~----~~~~Ls~l~~~~~~ 365 (443)
T PRK10887 296 IPFVRAKVGDRYVLEKLQEKG-----WRLGGENSGHILCLDKTTTGDGIVAALQVL-AAMVR----SGMSLADLCSGMKL 365 (443)
T ss_pred CcEEEcCCchHHHHHHHHhcC-----cEEEEecccceeccCccccCcHHHHHHHHH-HHHHH----hCCCHHHHHhhccc
Confidence 999999999999999998876 589999999999999999999999999876 99988 79999999999996
Q ss_pred hhccceeEEEeccChhhHhhhHHHHHHHHHhhhhhcccCCccccccCccccccccccCCCCCCcccccCceEEEEeeccc
Q 022948 171 PLESIELRMNIISEPRYAKAKGSEAIEEFRKYIEEGRLQGWELDSCGDCWVSEGCLVDSNESPAAIDARMYRAKVTDEEH 250 (289)
Q Consensus 171 ~~~~~~~~i~~~~~~~~~~~~~~~~m~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~DGiki~~~~~~~ 250 (289)
++ +...+++|+.++.|.. +++.|++..+.. + ++ +
T Consensus 366 ~~-~~~~~v~~~~~~~~~~--~~~~~~~~~~~~-----------------------------------~-~~--~----- 399 (443)
T PRK10887 366 FP-QVLINVRFKPGADDPL--ESEAVKAALAEV-----------------------------------E-AE--L----- 399 (443)
T ss_pred cc-ceEEEEEecccccccc--chHHHHHHHHHH-----------------------------------H-HH--h-----
Confidence 54 4456777764322321 224444432211 0 01 1
Q ss_pred CCceEEEEecCCCCccEEEEEEeCChhHHHHHHHHHhc
Q 022948 251 GQYGWIHLRQSIHNPNIAVNVQSMVPGGCRSITKSLRD 288 (289)
Q Consensus 251 ~~~~w~liRpSgTEP~iriy~Ea~~~~~~~~l~~~~~~ 288 (289)
+++||+|||||+|||++|||+||+|++.++++++++.+
T Consensus 400 ~~dgWvLiRpS~tEP~iri~~Ea~s~e~a~~l~~~~~~ 437 (443)
T PRK10887 400 GGRGRVLLRKSGTEPLIRVMVEGEDEAQVTALAERIAD 437 (443)
T ss_pred CCCeEEEEecCCCCeEEEEEEeeCCHHHHHHHHHHHHH
Confidence 25789999999999999999999999999999999875
No 18
>cd03088 ManB ManB is a bacterial phosphomannomutase (PMM) that catalyzes the conversion of mannose 6-phosphate to mannose-1-phosphate in the second of three steps in the GDP-mannose pathway, in which GDP-D-mannose is synthesized from fructose-6-phosphate. In Mycobacterium tuberculosis, the causative agent of tuberculosis, PMM is involved in the biosynthesis of mannosylated lipoglycans that participate in the association of mycobacteria with host macrophage phagocytic receptors. ManB belongs to the the alpha-D-phosphohexomutase superfamily which includes several related enzymes that catalyze a reversible intramolecular phosphoryl transfer on their sugar substrates. Other members of this superfamily include the phosphoglucomutases (PGM1 and PGM2), phosphoglucosamine mutase (PNGM), phosphoacetylglucosamine mutase (PAGM), the bacterial phosphoglucosamine mutase GlmM, and the bifunctional phosphomannomutase/phosphoglucomutase (PMM/PGM). Each of these enzymes has four domains with a centrall
Probab=100.00 E-value=9.8e-47 Score=365.29 Aligned_cols=245 Identities=19% Similarity=0.141 Sum_probs=197.8
Q ss_pred CCCCCCCCCChHHHHHHHHHHHhcCCcEEEEecCCCCeEEEEcCCCcccChhHHHHHHHHHHHhhCCCCeEEEcccCCHH
Q 022948 2 FPNHIPNPEDKTAMALTRAAVLENNADLGVVFDTDVDRSGVVDNKGNPINGDKLIALMSAIVLKEHPGTTIVTDARTSMA 81 (289)
Q Consensus 2 Fp~~~P~P~~~~~l~~l~~~v~~~~adlGia~D~DgDR~~vvd~~G~~l~~d~~~~Ll~~~~l~~~~~~~vv~t~~ss~~ 81 (289)
|++++|+|..+++++.+++.|++.+||+||++||||||++++|++|+++++|++++|+++++. ...||.|++||.+
T Consensus 201 ~~~~~~~~~~~~~l~~l~~~v~~~~adlGia~D~DgDR~~vvd~~G~~i~~d~l~~l~~~~~~----~~~Vv~~v~ss~~ 276 (459)
T cd03088 201 FIPVDTEAVRPEDRALAAAWAAEHGLDAIVSTDGDGDRPLVADETGEWLRGDILGLLTARFLG----ADTVVTPVSSNSA 276 (459)
T ss_pred CCCCCCCcCCHHHHHHHHHHHHhcCCCEEEEeCCCCCCceeECCCCCEECchHHHHHHHHHhC----CCEEEEccCCcHH
Confidence 555566665568999999999999999999999999999999999999999999999998863 2379999999999
Q ss_pred HHHHHHHcCCcEEEeecccHHHHHHHhhcccCCceeeEEeecccceecCC----------CccCCCHHHHHHHHHHHHHH
Q 022948 82 LTKFITDRGGNHCLYRVGYRNVIDKGVHLNEDGIETHLMMETSGHGALKE----------NYFLDDGAYMVVKIIIQMVR 151 (289)
Q Consensus 82 l~~~a~~~g~~v~~t~vG~k~i~~~~~~~~~~g~~~~~g~E~sg~~~~~~----------~~~~~Dgi~a~l~ll~e~~~ 151 (289)
+++++. ++++++||||++|++++|++..+.|..+++|+|+|||++|++ |.+++|||+++++++ ++++
T Consensus 277 i~~~~~--~~~~~~t~vG~~~i~~~m~~~~~~~~~~~~g~E~sg~~~~~~~~~~~~~~~~~~~~~Dgi~a~l~il-e~l~ 353 (459)
T cd03088 277 IELSGF--FKRVVRTRIGSPYVIAAMAEAAAAGAGRVVGYEANGGFLLGSDIERNGRTLKALPTRDAVLPILAVL-AAAK 353 (459)
T ss_pred HHHcCC--ceeEEECCCccHHHHHHHHHHHhcCCceEEEEecccceeccchhhccccccccCCCccHHHHHHHHH-HHHH
Confidence 988765 589999999999999999875433334689999999999996 567999999999776 9988
Q ss_pred HHhcCCCCCHHHHHHHchhhhccceeEEEeccChhhHhhhHHHHHHHHHhhhhhc-c-cCCccccccCccccccccccCC
Q 022948 152 MKLEGSDEGIGSLIKDLEEPLESIELRMNIISEPRYAKAKGSEAIEEFRKYIEEG-R-LQGWELDSCGDCWVSEGCLVDS 229 (289)
Q Consensus 152 ~~~~~~~~~l~~ll~~lp~~~~~~~~~i~~~~~~~~~~~~~~~~m~~l~~~~~~~-~-~~~~~v~~~~~~~~~~~~~~~~ 229 (289)
. ++++|+++++++|.+|.. ..+++ .|+|.. ++++|++|++..... . +... -
T Consensus 354 ~----~~~~Ls~ll~~l~~~~~~-~~~i~---~~~~~~--~~~~m~~l~~~~~~~~~~~~~~-----------------~ 406 (459)
T cd03088 354 E----AGIPLSELVASLPARFTA-SDRLQ---NFPTEK--SQALIARLSADPEARAAFFFAL-----------------G 406 (459)
T ss_pred h----cCCCHHHHHHHHhhcceE-hhccc---cCCHHH--HHHHHHHHHhChHhhhhhhhcc-----------------C
Confidence 7 899999999999987753 23443 122433 457999997643210 0 1000 0
Q ss_pred CCCCcccccCceEEEEeecccCCceEEEEecCCCCccEEEEEEeCChhHHHHHHHH
Q 022948 230 NESPAAIDARMYRAKVTDEEHGQYGWIHLRQSIHNPNIAVNVQSMVPGGCRSITKS 285 (289)
Q Consensus 230 ~~~~~~~~~DGiki~~~~~~~~~~~w~liRpSgTEP~iriy~Ea~~~~~~~~l~~~ 285 (289)
....+++++||+|+.| ++++|+|||||||||++|||+|++|+++++++++.
T Consensus 407 ~~~~~v~~~DGvk~~~-----~dg~W~liRpSgTEP~~riy~Ea~~~~~~~~l~~~ 457 (459)
T cd03088 407 GEVASIDTTDGLRMTF-----ANGDIVHLRPSGNAPELRCYVEADSEERARELLAR 457 (459)
T ss_pred CcccccCCCCeEEEEE-----CCCCEEEEECCCCCceEEEEEecCCHHHHHHHHHh
Confidence 0013577999999998 55679999999999999999999999999999864
No 19
>PRK14317 glmM phosphoglucosamine mutase; Provisional
Probab=100.00 E-value=3.9e-46 Score=361.60 Aligned_cols=226 Identities=22% Similarity=0.275 Sum_probs=190.2
Q ss_pred CCCCCChHHHHHHHHHHHhcCCcEEEEecCCCCeEEEEcCCCcccChhHHHHHHHHHHHhhC--CCCeEEEcccCCHHHH
Q 022948 6 IPNPEDKTAMALTRAAVLENNADLGVVFDTDVDRSGVVDNKGNPINGDKLIALMSAIVLKEH--PGTTIVTDARTSMALT 83 (289)
Q Consensus 6 ~P~P~~~~~l~~l~~~v~~~~adlGia~D~DgDR~~vvd~~G~~l~~d~~~~Ll~~~~l~~~--~~~~vv~t~~ss~~l~ 83 (289)
+|+|. +++++.+++.|++.+||+|++|||||||++++|++|+++++|++++|++++++++. +++.||.|++||..++
T Consensus 228 ~~~~~-~~~l~~l~~~v~~~~adlGia~DgDgDR~~~vd~~G~~i~~d~l~~l~a~~ll~~~~~~~~~VV~~v~ss~~~~ 306 (465)
T PRK14317 228 NVNCG-STHLEPLQAAVLEHGADMGFAFDGDADRVLAVDGQGRVVDGDHILYLWGSHLQEQNQLPDNLLVATVMSNLGFE 306 (465)
T ss_pred CCCCc-hHhHHHHHHHHHhcCCCEEEEECCCCcEEEEECCCCCEEChhHHHHHHHHHHHHhcCCCCCeEEEeeecchHHH
Confidence 34443 57899999999999999999999999999999999999999999999999999863 4458999999999999
Q ss_pred HHHHHcCCcEEEeecccHHHHHHHhhcccCCceeeEEeecccceecCCCccCCCHHHHHHHHHHHHHHHHhcCCCCCHHH
Q 022948 84 KFITDRGGNHCLYRVGYRNVIDKGVHLNEDGIETHLMMETSGHGALKENYFLDDGAYMVVKIIIQMVRMKLEGSDEGIGS 163 (289)
Q Consensus 84 ~~a~~~g~~v~~t~vG~k~i~~~~~~~~~~g~~~~~g~E~sg~~~~~~~~~~~Dgi~a~l~ll~e~~~~~~~~~~~~l~~ 163 (289)
++++++|+++++||||++|++++|.+.+ ++||||+|||++|+++++++|||+++++++ ++++. ++++|++
T Consensus 307 ~~~~~~g~~v~~t~vG~~~i~~~m~~~~-----~~~ggE~sg~~~~~~~~~~~Dgi~a~l~il-e~la~----~~~~lse 376 (465)
T PRK14317 307 RAWQQRGGQLERTAVGDQHVHAAMLETG-----AMLGGEQSGHILCHHHGLSGDGLLTALHLA-TLVHQ----SGVSLAE 376 (465)
T ss_pred HHHHHcCCeEEEcCCchHHHHHHHHHcC-----cEeeccccceEEEeccccCCcHHHHHHHHH-HHHHH----hCCCHHH
Confidence 9999999999999999999999999876 589999999999999999999999999776 99987 8999999
Q ss_pred HHHHchhhhccceeEEEeccC---hhhHhhhHHHHHHHHHhhhhhcccCCccccccCccccccccccCCCCCCcccccCc
Q 022948 164 LIKDLEEPLESIELRMNIISE---PRYAKAKGSEAIEEFRKYIEEGRLQGWELDSCGDCWVSEGCLVDSNESPAAIDARM 240 (289)
Q Consensus 164 ll~~lp~~~~~~~~~i~~~~~---~~~~~~~~~~~m~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~DG 240 (289)
++++++..|++...++.+... |+|.+ ++.+|+.+.+ . |
T Consensus 377 l~~~~~~~~p~~~~~~~~~~~~~~~~~~~--~~~~~~~i~~-~-----------------------------------~- 417 (465)
T PRK14317 377 LVDQSFQTYPQKLRNVRVEDRDRRLNWQE--CEPLQQAIAQ-A-----------------------------------E- 417 (465)
T ss_pred HHHhHHHhCCceEEEeeccccchhhhhhc--ChhHHHHHHH-H-----------------------------------H-
Confidence 999875556554455555432 33332 2345544321 1 0
Q ss_pred eEEEEeecccCCceEEEEecCCCCccEEEEEEeCChhHHHHHHHHHhc
Q 022948 241 YRAKVTDEEHGQYGWIHLRQSIHNPNIAVNVQSMVPGGCRSITKSLRD 288 (289)
Q Consensus 241 iki~~~~~~~~~~~w~liRpSgTEP~iriy~Ea~~~~~~~~l~~~~~~ 288 (289)
++ + .++||+|||||||||++|||+||.+++.++++++++.+
T Consensus 418 ~~--~-----~~~gW~liRpS~TEP~irv~~Ea~~~~~~~~l~~~~~~ 458 (465)
T PRK14317 418 AA--M-----GDTGRVLVRASGTEPLIRVMVEAEDAELVNHWTNHLVA 458 (465)
T ss_pred Hh--h-----cCCceEEEecCCCCCEEEEEEEeCCHHHHHHHHHHHHH
Confidence 11 1 25789999999999999999999999999999998875
No 20
>PRK14315 glmM phosphoglucosamine mutase; Provisional
Probab=100.00 E-value=5.6e-47 Score=366.03 Aligned_cols=219 Identities=23% Similarity=0.289 Sum_probs=187.3
Q ss_pred hHHHHHHHHHHHhcCCcEEEEecCCCCeEEEEcCCCcccChhHHHHHHHHHHHhhC--CCCeEEEcccCCHHHHHHHHHc
Q 022948 12 KTAMALTRAAVLENNADLGVVFDTDVDRSGVVDNKGNPINGDKLIALMSAIVLKEH--PGTTIVTDARTSMALTKFITDR 89 (289)
Q Consensus 12 ~~~l~~l~~~v~~~~adlGia~D~DgDR~~vvd~~G~~l~~d~~~~Ll~~~~l~~~--~~~~vv~t~~ss~~l~~~a~~~ 89 (289)
+++++.+++.|++.+||+|++|||||||++++|++|+++++|++++|+++++++.+ ++..||.|++||.+++++|+++
T Consensus 221 ~~~l~~l~~~v~~~~adlGia~DgDgDR~~ivd~~G~~i~~d~~~~l~a~~ll~~~~~~~~~vV~~v~ss~~i~~~a~~~ 300 (448)
T PRK14315 221 STHPEALAKKVREVRADIGIALDGDADRVIIVDEKGHVVDGDQLMALIAESWAEDGRLRGGGIVATVMSNLGLERFLADR 300 (448)
T ss_pred CCCHHHHHHHHHHcCCCEEEEEcCCCceEEEEcCCCcEeCHHHHHHHHHHHHHHhCCCCCCeEEEEecCChHHHHHHHHc
Confidence 46788999999999999999999999999999999999999999999999999865 4558999999999999999999
Q ss_pred CCcEEEeecccHHHHHHHhhcccCCceeeEEeecccceecCCCccCCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHch
Q 022948 90 GGNHCLYRVGYRNVIDKGVHLNEDGIETHLMMETSGHGALKENYFLDDGAYMVVKIIIQMVRMKLEGSDEGIGSLIKDLE 169 (289)
Q Consensus 90 g~~v~~t~vG~k~i~~~~~~~~~~g~~~~~g~E~sg~~~~~~~~~~~Dgi~a~l~ll~e~~~~~~~~~~~~l~~ll~~lp 169 (289)
|+++++||||++|++++|.+.+ ++||||+|||++|+++.+++|||+|+++++ ++++. ++++|+++++++|
T Consensus 301 g~~v~~t~vG~~~i~~~m~~~~-----~~~ggE~sg~~~f~~~~~~~Dgi~a~l~ll-e~la~----~~~~L~~l~~~~~ 370 (448)
T PRK14315 301 GLTLERTAVGDRYVVEHMREGG-----FNLGGEQSGHIVLSDYATTGDGLVAALQVL-AVVVR----SGRPASEVCRRFE 370 (448)
T ss_pred CCeEEEeCChHHHHHHHHHhCC-----CceeecccccEeecccCCCCcHHHHHHHHH-HHHHH----hCCCHHHHhhhcC
Confidence 9999999999999999999866 589999999999999999999999999776 99988 8999999999998
Q ss_pred hhhccceeEEEeccChhhHhhhHHHHHHHHHhhhhhcccCCccccccCccccccccccCCCCCCcccccCceEEEEeecc
Q 022948 170 EPLESIELRMNIISEPRYAKAKGSEAIEEFRKYIEEGRLQGWELDSCGDCWVSEGCLVDSNESPAAIDARMYRAKVTDEE 249 (289)
Q Consensus 170 ~~~~~~~~~i~~~~~~~~~~~~~~~~m~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~DGiki~~~~~~ 249 (289)
.++ +...+++|+.. .++. .+.. ...+||+++.+
T Consensus 371 ~~~-~~~~~~~~~~~---------~~~~--~~~~-------------------------------~~~~~~~~~~~---- 403 (448)
T PRK14315 371 PVP-QLLKNVRYSGG---------KPLE--DASV-------------------------------KSAIADAEARL---- 403 (448)
T ss_pred cCC-eeeeEEecCCc---------ccCC--CHHH-------------------------------HHHHHHHHHHh----
Confidence 654 33445555521 1100 0001 11346666554
Q ss_pred cCCceEEEEecCCCCccEEEEEEeCChhHHHHHHHHHhc
Q 022948 250 HGQYGWIHLRQSIHNPNIAVNVQSMVPGGCRSITKSLRD 288 (289)
Q Consensus 250 ~~~~~w~liRpSgTEP~iriy~Ea~~~~~~~~l~~~~~~ 288 (289)
+++||+|||||||||++|||+||++++.++++++.+.+
T Consensus 404 -~~~gWvLiRpS~teP~iri~~Ea~s~~~~~~l~~~~~~ 441 (448)
T PRK14315 404 -NGSGRLLIRPSGTEPLIRVMAEGDDRALVEEVVDEIVD 441 (448)
T ss_pred -cCCcEEEEecCCCCcEEEEEEeeCCHHHHHHHHHHHHH
Confidence 45789999999999999999999999999999998875
No 21
>PLN02307 phosphoglucomutase
Probab=100.00 E-value=9.1e-46 Score=365.31 Aligned_cols=263 Identities=13% Similarity=0.099 Sum_probs=203.0
Q ss_pred CCCCCCCCCCChHHHHHHHHHH-------HhcCCcEEEEecCCCCeEEEEcCCCcccChhHHHHHHHHHHHhhC----CC
Q 022948 1 MFPNHIPNPEDKTAMALTRAAV-------LENNADLGVVFDTDVDRSGVVDNKGNPINGDKLIALMSAIVLKEH----PG 69 (289)
Q Consensus 1 ~Fp~~~P~P~~~~~l~~l~~~v-------~~~~adlGia~D~DgDR~~vvd~~G~~l~~d~~~~Ll~~~~l~~~----~~ 69 (289)
+||+++|||+ +..+..+...+ .+.+||+|+++||||||++++ ++|++++++.++++++.+++... ++
T Consensus 263 ~Fp~~~PnP~-~~~l~~lv~~~~~~~~~~~~~~aDlgiA~DgDaDR~~vv-~~g~~i~~d~~l~ll~~~~l~~~~~~~~g 340 (579)
T PLN02307 263 DFGGGHPDPN-LTYAKELVKRMGLGKTSYGDEPPEFGAASDGDGDRNMIL-GKRFFVTPSDSVAIIAANAQEAIPYFSGG 340 (579)
T ss_pred CCCCCCCCCC-HHHHHHHHHHhhhccccccccCCCEEEEeCCCCCeEEEE-ecCcEEcCChHHHHHHHHHHHhhhhhhcC
Confidence 5999999997 45555555444 345699999999999999999 88999999999999999987652 22
Q ss_pred C-eEEEcccCCHHHHHHHHHcCCcEEEeecccHHHHHHHhhcccCCceeeEEeecccceecCCCccCCCHHHHHHHHHHH
Q 022948 70 T-TIVTDARTSMALTKFITDRGGNHCLYRVGYRNVIDKGVHLNEDGIETHLMMETSGHGALKENYFLDDGAYMVVKIIIQ 148 (289)
Q Consensus 70 ~-~vv~t~~ss~~l~~~a~~~g~~v~~t~vG~k~i~~~~~~~~~~g~~~~~g~E~sg~~~~~~~~~~~Dgi~a~l~ll~e 148 (289)
. .||.|++||.+++++|+++|+++++|+||||||.++|.+.+ ++||||||||++ +++.+++|||+|++.++ |
T Consensus 341 ~~~VV~tv~sS~~l~~ia~~~G~~~~~t~vGfk~I~~~m~e~~-----~~~GgEeSgG~~-~~~~~dkDGi~aallll-e 413 (579)
T PLN02307 341 LKGVARSMPTSAALDVVAKKLNLPFFEVPTGWKFFGNLMDAGK-----LSICGEESFGTG-SDHIREKDGIWAVLAWL-S 413 (579)
T ss_pred CcEEEEeChhhHHHHHHHHHcCCeEEEcCchHHHHHHHHHhCC-----cEEEEcccCCCC-CCCCCCCcHHHHHHHHH-H
Confidence 1 69999999999999999999999999999999999998864 689999999995 99999999999999665 9
Q ss_pred HHHHHhcCC----CC--CHHHHHHHchhhhc-cceeEEEeccChhhHhhhHHHHHHHHHhhh----hhcccCCccccccC
Q 022948 149 MVRMKLEGS----DE--GIGSLIKDLEEPLE-SIELRMNIISEPRYAKAKGSEAIEEFRKYI----EEGRLQGWELDSCG 217 (289)
Q Consensus 149 ~~~~~~~~~----~~--~l~~ll~~lp~~~~-~~~~~i~~~~~~~~~~~~~~~~m~~l~~~~----~~~~~~~~~v~~~~ 217 (289)
|++.+ .++ ++ ||++++++|+..|. +.+.++++... +. +++.++|.+|+... ....+.+.+++.+.
T Consensus 414 l~a~~-~~~~~~~~~~~tl~~~l~el~~~~G~~~~~~~~~~~~--~~-~~~~~~~~~lr~~~~~~~~~~~~~~~~v~~~~ 489 (579)
T PLN02307 414 ILAHK-NKDVLPGGKLVTVEDIVREHWATYGRNFYSRYDYENV--DS-EAANKMMDHLRDLVNKSKKGIKYGVYTLAFAD 489 (579)
T ss_pred HHHHh-CCCcccccCcCCHHHHHHHHHHHhCCCeeeecceecC--CH-HHHHHHHHHHhcccccccCCCEecceEEEEEe
Confidence 99872 222 33 78999999998884 34555555432 21 12346777777632 22345566666666
Q ss_pred ccccccccccCCCCCCcccccCceEEEEeecccCCceEEEEecCCCC---ccEEEEEEe-CCh--hHHHHHHHHHh
Q 022948 218 DCWVSEGCLVDSNESPAAIDARMYRAKVTDEEHGQYGWIHLRQSIHN---PNIAVNVQS-MVP--GGCRSITKSLR 287 (289)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~~DGiki~~~~~~~~~~~w~liRpSgTE---P~iriy~Ea-~~~--~~~~~l~~~~~ 287 (289)
||.++ +.. +..+...||+|+.| ++++|+++|||||| |++|+|+|+ .+. +++.++++..+
T Consensus 490 d~~~~---~~~---~~~~~~~dglk~~~-----~dg~wi~~RpSGTE~~~PkiK~Y~e~~~~~~~~~~~~~~~~~~ 554 (579)
T PLN02307 490 DFEYT---DPV---DGSVSSKQGIRFLF-----TDGSRIIFRLSGTGSAGATIRLYIEQYEKDPSKHGRDAQEALK 554 (579)
T ss_pred eceee---cCC---CCCCCccCeEEEEE-----cCCeEEEEEcCCCCCCCCeEEEEEEEecCCHHHHHHHHHHHHH
Confidence 66521 101 12456799999999 66789999999999 999999999 566 67777666543
No 22
>cd03084 phosphohexomutase The alpha-D-phosphohexomutase superfamily includes several related enzymes that catalyze a reversible intramolecular phosphoryl transfer on their sugar substrates. Members of this family include the phosphoglucomutases (PGM1 and PGM2), phosphoglucosamine mutase (PNGM), phosphoacetylglucosamine mutase (PAGM), the bacterial phosphomannomutase ManB, the bacterial phosphoglucosamine mutase GlmM, and the bifunctional phosphomannomutase/phosphoglucomutase (PMM/PGM). These enzymes play important and diverse roles in carbohydrate metabolism in organisms from bacteria to humans. Each of these enzymes has four domains with a centrally located active site formed by four loops, one from each domain. All four domains are included in this alignment model.
Probab=100.00 E-value=9.4e-46 Score=347.67 Aligned_cols=204 Identities=26% Similarity=0.344 Sum_probs=184.8
Q ss_pred CCCCCCCCCCChHHHHHHHHHHHhcCCcEEEEecCCCCeEEEEcCCCcccChhHHHHHHHHHHHhh-CCCCeEEEcccCC
Q 022948 1 MFPNHIPNPEDKTAMALTRAAVLENNADLGVVFDTDVDRSGVVDNKGNPINGDKLIALMSAIVLKE-HPGTTIVTDARTS 79 (289)
Q Consensus 1 ~Fp~~~P~P~~~~~l~~l~~~v~~~~adlGia~D~DgDR~~vvd~~G~~l~~d~~~~Ll~~~~l~~-~~~~~vv~t~~ss 79 (289)
.||+++|||..+++++.+.+.|++.+||+|+++||||||++++|++|+++++|++++|+++++++. .++..||+|++||
T Consensus 149 ~F~~~~p~p~~~~~l~~l~~~v~~~~adlG~a~DgDgDRl~~vd~~G~~l~~d~~~al~~~~l~~~~~~~~~vv~~v~ss 228 (355)
T cd03084 149 NFGNINPDPGSETNLKQLLAVVKAEKADFGVAFDGDADRLIVVDENGGFLDGDELLALLAVELFLTFNPRGGVVKTVVSS 228 (355)
T ss_pred CCCCCCCCCCchhhHHHHHHHHHhcCCCEEEEEcCCCceeEEECCCCceeCHhHHHHHHHHHHHHhcCCCCCEEEEccch
Confidence 489999999988999999999999999999999999999999999999999999999999999865 4556899999999
Q ss_pred HHHHHHHHHcCCcEEEeecccHHHHHHHhhcccCCceeeEEeecccceecCCCccCCCHHHHHHHHHHHHHHHHhcCCCC
Q 022948 80 MALTKFITDRGGNHCLYRVGYRNVIDKGVHLNEDGIETHLMMETSGHGALKENYFLDDGAYMVVKIIIQMVRMKLEGSDE 159 (289)
Q Consensus 80 ~~l~~~a~~~g~~v~~t~vG~k~i~~~~~~~~~~g~~~~~g~E~sg~~~~~~~~~~~Dgi~a~l~ll~e~~~~~~~~~~~ 159 (289)
.+++++++++|+++++||||++|++++|.+.+ ++||||+|||++|+++++++|||+++++++ +|++. +++
T Consensus 229 ~~i~~ia~~~g~~v~~t~~G~~~i~~~m~~~~-----~~~ggE~sg~~~~~~~~~~~Dgi~a~l~~l-e~la~----~~~ 298 (355)
T cd03084 229 GALDKVAKKLGIKVIRTKTGFKWVGEAMQEGD-----VVLGGEESGGVIFPEFHPGRDGISAALLLL-EILAN----LGK 298 (355)
T ss_pred HHHHHHHHHcCCcEEEecCcHHHHHHHHHhcC-----ceEEecCcCCEEECCcCCCCCHHHHHHHHH-HHHHH----hCC
Confidence 99999999999999999999999999998865 589999999999999999999999999876 99988 799
Q ss_pred CHHHHHHHchhhhccceeEEEeccChhhHhhhHHHHHHHHHhhhhhcccCCccccccCccccccccccCCCCCCcccccC
Q 022948 160 GIGSLIKDLEEPLESIELRMNIISEPRYAKAKGSEAIEEFRKYIEEGRLQGWELDSCGDCWVSEGCLVDSNESPAAIDAR 239 (289)
Q Consensus 160 ~l~~ll~~lp~~~~~~~~~i~~~~~~~~~~~~~~~~m~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~D 239 (289)
||+++++++|.+|.. + . +
T Consensus 299 ~Ls~l~~~~p~~~~~---~-------------------------~-----------------------------~----- 316 (355)
T cd03084 299 SLSELFSELPRYYYI---R-------------------------L-----------------------------K----- 316 (355)
T ss_pred CHHHHHHHhhHhccc---c-------------------------c-----------------------------c-----
Confidence 999999998854210 0 0 0
Q ss_pred ceEEEEeecccCCceEEEEecCCCCccEEEEEEeCChhHHHHHHHHHhc
Q 022948 240 MYRAKVTDEEHGQYGWIHLRQSIHNPNIAVNVQSMVPGGCRSITKSLRD 288 (289)
Q Consensus 240 Giki~~~~~~~~~~~w~liRpSgTEP~iriy~Ea~~~~~~~~l~~~~~~ 288 (289)
. . ||+|||||||||++|||+||+++++++++++.+.+
T Consensus 317 -----v------~-gW~lirps~tep~~ri~~Ea~~~e~a~~l~~~~~~ 353 (355)
T cd03084 317 -----V------R-GWVLVRASGTEPAIRIYAEADTQEDVEQIKKEARE 353 (355)
T ss_pred -----c------c-eEEEEecCCCCcEEEEEEeeCCHHHHHHHHHHHHh
Confidence 1 1 79999999999999999999999999999998764
No 23
>PRK14316 glmM phosphoglucosamine mutase; Provisional
Probab=100.00 E-value=3.9e-46 Score=360.25 Aligned_cols=219 Identities=22% Similarity=0.308 Sum_probs=184.0
Q ss_pred HHHHHHHHHHHhcCCcEEEEecCCCCeEEEEcCCCcccChhHHHHHHHHHHHhhC--CCCeEEEcccCCHHHHHHHHHcC
Q 022948 13 TAMALTRAAVLENNADLGVVFDTDVDRSGVVDNKGNPINGDKLIALMSAIVLKEH--PGTTIVTDARTSMALTKFITDRG 90 (289)
Q Consensus 13 ~~l~~l~~~v~~~~adlGia~D~DgDR~~vvd~~G~~l~~d~~~~Ll~~~~l~~~--~~~~vv~t~~ss~~l~~~a~~~g 90 (289)
++++.+++.|++.+||+|++|||||||++++|++|+++++|++++|+++++++.+ ++..||.|++||.+++++++++|
T Consensus 219 ~~~~~l~~~v~~~~adlGia~DgDaDR~~~vd~~G~~i~~d~~~~l~a~~ll~~~~~~~~~vv~~v~ss~~~~~~~~~~g 298 (448)
T PRK14316 219 THPEALQELVVEKGADLGLAFDGDADRLIAVDENGNIVDGDKIMFICGKYLKEKGRLKKNTIVTTVMSNLGFYKALEEEG 298 (448)
T ss_pred CCHHHHHHHHhhcCCCEEEEEcCCCceEEEECCCCCEeCHHHHHHHHHHHHHHhCCCCCCeEEEeccCchHHHHHHHHcC
Confidence 4567889999999999999999999999999999999999999999999999875 44589999999999999999999
Q ss_pred CcEEEeecccHHHHHHHhhcccCCceeeEEeecccceecCCCccCCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHchh
Q 022948 91 GNHCLYRVGYRNVIDKGVHLNEDGIETHLMMETSGHGALKENYFLDDGAYMVVKIIIQMVRMKLEGSDEGIGSLIKDLEE 170 (289)
Q Consensus 91 ~~v~~t~vG~k~i~~~~~~~~~~g~~~~~g~E~sg~~~~~~~~~~~Dgi~a~l~ll~e~~~~~~~~~~~~l~~ll~~lp~ 170 (289)
+++++||||++|++++|.+.+ ++||||+|||++|+++.+++|||+++++++ ++++. ++++|+++++++|.
T Consensus 299 ~~v~~~~vG~~~i~~~m~~~~-----~~~ggE~sG~~~f~~~~~~~Dgi~a~l~il-e~l~~----~~~~ls~l~~~~~~ 368 (448)
T PRK14316 299 INSVKTKVGDRYVVEEMRKGG-----YNLGGEQSGHIIFLDYNTTGDGLLTALQLA-KVMKE----TGKKLSELAAEMKK 368 (448)
T ss_pred CeEEEeCChHHHHHHHHHhcC-----CeEEEcCcccEEecccCCCCcHHHHHHHHH-HHHHH----hCCCHHHHHhhhhh
Confidence 999999999999999999876 589999999999999999999999999876 99887 89999999999874
Q ss_pred hhccceeEEEeccChhhHhhhHHHHHHHHHhhhhhcccCCccccccCccccccccccCCCCCCcccccCceEEEEeeccc
Q 022948 171 PLESIELRMNIISEPRYAKAKGSEAIEEFRKYIEEGRLQGWELDSCGDCWVSEGCLVDSNESPAAIDARMYRAKVTDEEH 250 (289)
Q Consensus 171 ~~~~~~~~i~~~~~~~~~~~~~~~~m~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~DGiki~~~~~~~ 250 (289)
++..+.++++.. + +++|+. +... ..++++++.+
T Consensus 369 -~p~~~~~~~v~~-----k---~~~~~~--~~~~-------------------------------~~i~~i~~~~----- 401 (448)
T PRK14316 369 -YPQKLVNVRVTD-----K---KKAMEN--PEIK-------------------------------EIIEKVEEEM----- 401 (448)
T ss_pred -cCcceEEeEeCC-----c---cccccC--HHHH-------------------------------HHHHHHHHHh-----
Confidence 333344555532 1 133321 1111 1234444433
Q ss_pred CCceEEEEecCCCCccEEEEEEeCChhHHHHHHHHHhc
Q 022948 251 GQYGWIHLRQSIHNPNIAVNVQSMVPGGCRSITKSLRD 288 (289)
Q Consensus 251 ~~~~w~liRpSgTEP~iriy~Ea~~~~~~~~l~~~~~~ 288 (289)
+++||+|||||||||++|||+||.+++.++++++++.+
T Consensus 402 ~~~gw~liRpS~TEP~irvy~Ea~~~e~~~~l~~~~~~ 439 (448)
T PRK14316 402 AGNGRVLVRPSGTEPLVRVMAEAPTQEEVDKYVDRIAD 439 (448)
T ss_pred CCCceEEEecCCCCcEEEEEEEeCCHHHHHHHHHHHHH
Confidence 35789999999999999999999999999999998865
No 24
>cd05802 GlmM GlmM is a bacterial phosphoglucosamine mutase (PNGM) that belongs to the alpha-D-phosphohexomutase superfamily. It is required for the interconversion of glucosamine-6-phosphate and glucosamine-1-phosphate in the biosynthetic pathway of UDP-N-acetylglucosamine, an essential precursor to components of the cell envelope. In order to be active, GlmM must be phosphorylated, which can occur via autophosphorylation or by the Ser/Thr kinase StkP. GlmM functions in a classical ping-pong bi-bi mechanism with glucosamine-1,6-diphosphate as an intermediate. Other members of the alpha-D-phosphohexomutase superfamily include phosphoglucosamine mutase (PNGM), phosphoacetylglucosamine mutase (PAGM), the bacterial phosphomannomutase ManB, and the bifunctional phosphomannomutase/phosphoglucomutase (PMM/PGM). Each of these enzymes has four domains with a centrally located active site formed by four loops, one from each domain. All four domains are included in this alignment model.
Probab=100.00 E-value=6.9e-46 Score=357.19 Aligned_cols=218 Identities=24% Similarity=0.350 Sum_probs=185.2
Q ss_pred hHHHHHHHHHHHhcCCcEEEEecCCCCeEEEEcCCCcccChhHHHHHHHHHHHhhC--CCCeEEEcccCCHHHHHHHHHc
Q 022948 12 KTAMALTRAAVLENNADLGVVFDTDVDRSGVVDNKGNPINGDKLIALMSAIVLKEH--PGTTIVTDARTSMALTKFITDR 89 (289)
Q Consensus 12 ~~~l~~l~~~v~~~~adlGia~D~DgDR~~vvd~~G~~l~~d~~~~Ll~~~~l~~~--~~~~vv~t~~ss~~l~~~a~~~ 89 (289)
+++++.+++.|++.+||+|+++||||||++++|++|+++++|++++|+++++++.+ ++..||.|++||.+++++++++
T Consensus 214 ~~~~~~l~~~v~~~~adlGia~DgDgDR~~~vd~~G~~i~~d~~~~l~a~~l~~~~~~~~~~vv~~v~ss~~~~~~~~~~ 293 (434)
T cd05802 214 STHPESLQKAVLENGADLGIAFDGDADRVIAVDEKGNIVDGDQILAICARDLKERGRLKGNTVVGTVMSNLGLEKALKEL 293 (434)
T ss_pred ccCHHHHHHHHHhcCCCEEEEEcCCCceEEEECCCCCEeCHHHHHHHHHHHHHHhCCCCCCeEEEecCCcHHHHHHHHHc
Confidence 46788999999999999999999999999999999999999999999999999875 4458999999999999999999
Q ss_pred CCcEEEeecccHHHHHHHhhcccCCceeeEEeecccceecCCCccCCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHch
Q 022948 90 GGNHCLYRVGYRNVIDKGVHLNEDGIETHLMMETSGHGALKENYFLDDGAYMVVKIIIQMVRMKLEGSDEGIGSLIKDLE 169 (289)
Q Consensus 90 g~~v~~t~vG~k~i~~~~~~~~~~g~~~~~g~E~sg~~~~~~~~~~~Dgi~a~l~ll~e~~~~~~~~~~~~l~~ll~~lp 169 (289)
|+++++||||++|++++|.+.+ ++||||+|||++|+++++++|||+++++++ ++++. ++++|+++++++|
T Consensus 294 g~~v~~~~~G~~~i~~~~~~~~-----~~~ggE~sG~~~f~~~~~~~Dgi~a~l~ll-e~la~----~~~~ls~l~~~l~ 363 (434)
T cd05802 294 GIKLVRTKVGDRYVLEEMLKHG-----ANLGGEQSGHIIFLDHSTTGDGLLTALQLL-AIMKR----SGKSLSELASDMK 363 (434)
T ss_pred CCeEEEEcChHHHHHHHHHhcC-----CEEEEecCCCEEecCcCCCCcHHHHHHHHH-HHHHH----hCCCHHHHHhhcc
Confidence 9999999999999999999876 589999999999999999999999999876 99987 8999999999998
Q ss_pred hhhccceeEEEeccChhhHhhhHHHHHHHHHhhhhhcccCCccccccCccccccccccCCCCCCcccccCceEEEEeecc
Q 022948 170 EPLESIELRMNIISEPRYAKAKGSEAIEEFRKYIEEGRLQGWELDSCGDCWVSEGCLVDSNESPAAIDARMYRAKVTDEE 249 (289)
Q Consensus 170 ~~~~~~~~~i~~~~~~~~~~~~~~~~m~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~DGiki~~~~~~ 249 (289)
.++ +...++++... +++|. ..+ .. ..+||+++.+
T Consensus 364 ~~~-~~~~~v~~~~~--------~~~~~-~~~-~~-------------------------------~~~~~~~~~~---- 397 (434)
T cd05802 364 LYP-QVLVNVRVKDK--------KALLE-NPR-VQ-------------------------------AAIAEAEKEL---- 397 (434)
T ss_pred ccC-eeeEEEEeCCc--------ccccc-CHH-HH-------------------------------HHHHHHHHhh----
Confidence 654 33445555421 12221 111 11 1245555544
Q ss_pred cCCceEEEEecCCCCccEEEEEEeCChhHHHHHHHHH
Q 022948 250 HGQYGWIHLRQSIHNPNIAVNVQSMVPGGCRSITKSL 286 (289)
Q Consensus 250 ~~~~~w~liRpSgTEP~iriy~Ea~~~~~~~~l~~~~ 286 (289)
+++||+|||||||||++|||+||++++.++++++++
T Consensus 398 -~~~gW~liRpS~tep~irv~~Ea~s~~~~~~l~~~~ 433 (434)
T cd05802 398 -GGEGRVLVRPSGTEPLIRVMVEGEDEELVEKLAEEL 433 (434)
T ss_pred -CCCeEEEEecCCCCcEEEEEEeeCCHHHHHHHHHhh
Confidence 347999999999999999999999999999999875
No 25
>PRK14324 glmM phosphoglucosamine mutase; Provisional
Probab=100.00 E-value=2.3e-45 Score=354.48 Aligned_cols=217 Identities=18% Similarity=0.223 Sum_probs=181.7
Q ss_pred hHHHHHHHHHHHhcCCcEEEEecCCCCeEEEEcCCCcccChhHHHHHHHHHHHhhC--CCCeEEEcccCCHHHHHHHHHc
Q 022948 12 KTAMALTRAAVLENNADLGVVFDTDVDRSGVVDNKGNPINGDKLIALMSAIVLKEH--PGTTIVTDARTSMALTKFITDR 89 (289)
Q Consensus 12 ~~~l~~l~~~v~~~~adlGia~D~DgDR~~vvd~~G~~l~~d~~~~Ll~~~~l~~~--~~~~vv~t~~ss~~l~~~a~~~ 89 (289)
+.+++.+++.|++.+||+|++|||||||++++|++|+++++|++++|+++++++++ ++..||.|++||..++++++++
T Consensus 220 ~~~~e~l~~~v~~~~adlGia~DgDgDR~~vvd~~G~~l~~d~~~~l~a~~ll~~~~~~~~~VV~~v~ss~~l~~ia~~~ 299 (446)
T PRK14324 220 ALHPENLAQEVKRYRADIGFAFDGDADRLVVVDEKGEIVHGDKLLGVLAVYLKEKGALKSQAIVATVMSNLALEEYLKKH 299 (446)
T ss_pred CCCHHHHHHHHHhCCCCEEEEECCCCceEEEECCCCCEeCHHHHHHHHHHHHHHhCCCCCCeEEEEecCChHHHHHHHHc
Confidence 34667788999999999999999999999999999999999999999999999875 4458999999999999999999
Q ss_pred CCcEEEeecccHHHHHHHhhcccCCceeeEEeecccceecCCCccCCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHch
Q 022948 90 GGNHCLYRVGYRNVIDKGVHLNEDGIETHLMMETSGHGALKENYFLDDGAYMVVKIIIQMVRMKLEGSDEGIGSLIKDLE 169 (289)
Q Consensus 90 g~~v~~t~vG~k~i~~~~~~~~~~g~~~~~g~E~sg~~~~~~~~~~~Dgi~a~l~ll~e~~~~~~~~~~~~l~~ll~~lp 169 (289)
|+++++||||++|++++|.+.+ ++||||+|||++|+++.+++|||+++++++ ++++. ++++|+++++++|
T Consensus 300 g~~v~~t~vG~~~i~~~m~~~~-----~~~ggE~sG~~~~~~~~~~~Dgi~a~l~ll-e~la~----~~~~ls~l~~~~~ 369 (446)
T PRK14324 300 GIELKRCNVGDKYVLECMKENG-----INFGGEQSGHIIFSDYAKTGDGLVSALQVS-ALMLE----SKKKASEALNPFE 369 (446)
T ss_pred CCeEEEeCChHHHHHHHHHhcC-----CEEEEcCcccEEecCcCCCCcHHHHHHHHH-HHHHH----cCCCHHHHHHhhh
Confidence 9999999999999999999876 589999999999999999999999999876 99988 8999999999998
Q ss_pred hhhccceeEEEeccChhhHhhhHHHHHHHHHhhhhhcccCCccccccCccccccccccCCCCCCcccccCceEEEEeecc
Q 022948 170 EPLESIELRMNIISEPRYAKAKGSEAIEEFRKYIEEGRLQGWELDSCGDCWVSEGCLVDSNESPAAIDARMYRAKVTDEE 249 (289)
Q Consensus 170 ~~~~~~~~~i~~~~~~~~~~~~~~~~m~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~DGiki~~~~~~ 249 (289)
. |++...++++.... .. ..++.+.+... .+|
T Consensus 370 ~-~~~~~~~~~~~~~~-~~-----~~~~~~~~~~~--------------------------------~~~---------- 400 (446)
T PRK14324 370 L-YPQLLVNLKVQEKK-PL-----EKIKGLKELLK--------------------------------ELE---------- 400 (446)
T ss_pred h-cCceeEEEeeCCcc-cc-----ccCHHHHHHHH--------------------------------HHh----------
Confidence 6 44445566664211 01 11122221110 111
Q ss_pred cCCceEEEEecCCCCccEEEEEEeCChhHHHHHHHHHhc
Q 022948 250 HGQYGWIHLRQSIHNPNIAVNVQSMVPGGCRSITKSLRD 288 (289)
Q Consensus 250 ~~~~~w~liRpSgTEP~iriy~Ea~~~~~~~~l~~~~~~ 288 (289)
++++|+|||||||||++|||+||++++.++++++.+.+
T Consensus 401 -~dg~~~lvR~SgTEp~irv~~Ea~~~~~~~~l~~~~~~ 438 (446)
T PRK14324 401 -KLGIRHLIRYSGTENKLRILLEGKDEKLLEKKMQELVE 438 (446)
T ss_pred -cCCcEEEEecCCCCceEEEEEEECCHHHHHHHHHHHHH
Confidence 14569999999999999999999999999999988764
No 26
>PRK14314 glmM phosphoglucosamine mutase; Provisional
Probab=100.00 E-value=2.3e-45 Score=354.98 Aligned_cols=220 Identities=25% Similarity=0.321 Sum_probs=183.5
Q ss_pred hHHHHHHHHHHHhcCCcEEEEecCCCCeEEEEcCCCcccChhHHHHHHHHHHHhhC--CCCeEEEcccCCHHHHHHHHHc
Q 022948 12 KTAMALTRAAVLENNADLGVVFDTDVDRSGVVDNKGNPINGDKLIALMSAIVLKEH--PGTTIVTDARTSMALTKFITDR 89 (289)
Q Consensus 12 ~~~l~~l~~~v~~~~adlGia~D~DgDR~~vvd~~G~~l~~d~~~~Ll~~~~l~~~--~~~~vv~t~~ss~~l~~~a~~~ 89 (289)
+.+++.+.+.|++.+||+|+++||||||++++|++|+++++|++++|+++++++.+ ++..||+|++||.+++++|+++
T Consensus 222 ~~~~~~l~~~v~~~~adlGia~DgDgDR~~~vd~~G~~i~~d~~~al~~~~ll~~~~~~~~~vv~~v~ss~~~~~ia~~~ 301 (450)
T PRK14314 222 SLHPEVIAKAVIEHGADLGIALDGDADRLIVVDEKGHIVDGDQIMAICATDLKKRGALPKNTLVATVMSNMGLEVAMKEL 301 (450)
T ss_pred CCCHHHHHHHHHhcCCCeEEEEcCCCceEEEECCCCcCcCHHHHHHHHHHHHHHhcCCCCCEEEEeccCChHHHHHHHHc
Confidence 35677889999999999999999999999999999999999999999999999873 4557999999999999999999
Q ss_pred CCcEEEeecccHHHHHHHhhcccCCceeeEEeecccceecCCCccCCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHch
Q 022948 90 GGNHCLYRVGYRNVIDKGVHLNEDGIETHLMMETSGHGALKENYFLDDGAYMVVKIIIQMVRMKLEGSDEGIGSLIKDLE 169 (289)
Q Consensus 90 g~~v~~t~vG~k~i~~~~~~~~~~g~~~~~g~E~sg~~~~~~~~~~~Dgi~a~l~ll~e~~~~~~~~~~~~l~~ll~~lp 169 (289)
|+++++||||++|++++|.+.+ ++||||+|||++|+++.+++|||+++++++ ++++. ++++|+++++++|
T Consensus 302 g~~v~~t~vG~~~i~~~m~~~~-----~~~ggE~sg~~~~~~~~~~~Dgi~a~l~~l-e~la~----~~~~Ls~l~~~~~ 371 (450)
T PRK14314 302 GGQVLRTPVGDRYVVEEMRRGG-----ANLGGEQSGHLIFLDHNTTGDGILSALQVL-RIMIE----SGKPLSELAGLLE 371 (450)
T ss_pred CCEEEEeCChHHHHHHHHHhcC-----CEEEEeCcccEEEeCCCCCCcHHHHHHHHH-HHHHH----hCCCHHHHHhhhh
Confidence 9999999999999999999876 589999999999999999999999999776 99988 8999999999776
Q ss_pred hhhccceeEEEeccChhhHhhhHHHHHHHHHhhhhhcccCCccccccCccccccccccCCCCCCcccccCceEEEEeecc
Q 022948 170 EPLESIELRMNIISEPRYAKAKGSEAIEEFRKYIEEGRLQGWELDSCGDCWVSEGCLVDSNESPAAIDARMYRAKVTDEE 249 (289)
Q Consensus 170 ~~~~~~~~~i~~~~~~~~~~~~~~~~m~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~DGiki~~~~~~ 249 (289)
. +++...++++.. +. +...+..+. ..+||+++.+
T Consensus 372 ~-~p~~~~~~~~~~-----k~-~~~~~~~~~-----------------------------------~~i~~v~~~~---- 405 (450)
T PRK14314 372 P-FPQALINVRVKE-----KI-PLETLPEVA-----------------------------------KAIKDVEEAL---- 405 (450)
T ss_pred h-cCccceEeEeCC-----cC-ccccHHHHH-----------------------------------HHHHHHHhhh----
Confidence 3 333233333321 10 001111111 1345555544
Q ss_pred cCCceEEEEecCCCCccEEEEEEeCChhHHHHHHHHHhc
Q 022948 250 HGQYGWIHLRQSIHNPNIAVNVQSMVPGGCRSITKSLRD 288 (289)
Q Consensus 250 ~~~~~w~liRpSgTEP~iriy~Ea~~~~~~~~l~~~~~~ 288 (289)
+++||+|||||+|||++|||+||++++.++++++++.+
T Consensus 406 -~~~gWvLiRpS~tEP~iri~~Ea~~~~~a~~l~~~~~~ 443 (450)
T PRK14314 406 -GDSGRVLLRYSGTENLCRVMVEGEDKHQVDSLAKEIAD 443 (450)
T ss_pred -CCCcEEEEecCCCCcEEEEEEeeCCHHHHHHHHHHHHH
Confidence 35789999999999999999999999999999998875
No 27
>PRK14322 glmM phosphoglucosamine mutase; Provisional
Probab=100.00 E-value=6e-45 Score=350.14 Aligned_cols=214 Identities=20% Similarity=0.286 Sum_probs=182.5
Q ss_pred hHHHHHHHHHHHhcCCcEEEEecCCCCeEEEEcCCCcccChhHHHHHHHHHHHhhC--CCCeEEEcccCCHHHHHHHHHc
Q 022948 12 KTAMALTRAAVLENNADLGVVFDTDVDRSGVVDNKGNPINGDKLIALMSAIVLKEH--PGTTIVTDARTSMALTKFITDR 89 (289)
Q Consensus 12 ~~~l~~l~~~v~~~~adlGia~D~DgDR~~vvd~~G~~l~~d~~~~Ll~~~~l~~~--~~~~vv~t~~ss~~l~~~a~~~ 89 (289)
+++++.+.+.|+ ++|+|++|||||||++++|++|+++++|++++|++.++++.+ ++..||.|++||.+++++++++
T Consensus 210 ~~~l~~l~~~v~--~~dlGia~DgD~DR~~~vd~~G~~i~~d~~~~l~a~~l~~~~~~~~~~vV~~v~ss~~l~~~a~~~ 287 (429)
T PRK14322 210 ATHPRFLAEEMK--NGKVGFTFDGDGDRVIAVDEERNVVNGDRIIGILAVGLKEEGRLNSDTVVGTVMTNGGLEDFLKER 287 (429)
T ss_pred cCCHHHHHHHHH--hcCEEEEEcCCCceEEEECCCCcEEChHHHHHHHHHHHHHhcCCCCCeEEEeecCchHHHHHHHHc
Confidence 467888888887 469999999999999999999999999999999999999875 2238999999999999999999
Q ss_pred CCcEEEeecccHHHHHHHhhcccCCceeeEEeecccceecCCCccCCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHch
Q 022948 90 GGNHCLYRVGYRNVIDKGVHLNEDGIETHLMMETSGHGALKENYFLDDGAYMVVKIIIQMVRMKLEGSDEGIGSLIKDLE 169 (289)
Q Consensus 90 g~~v~~t~vG~k~i~~~~~~~~~~g~~~~~g~E~sg~~~~~~~~~~~Dgi~a~l~ll~e~~~~~~~~~~~~l~~ll~~lp 169 (289)
|+++++||||++|++++|.+.+ ++||||+|||++|+++++++|||+++++++ ++++. ++++|+++++++|
T Consensus 288 g~~v~~t~vG~~~i~~~m~~~~-----~~~ggE~sG~~~~~~~~~~~Dgi~a~l~ll-e~la~----~~~~Ls~l~~~lp 357 (429)
T PRK14322 288 GIKLLRTKVGDKYVLEKMLESG-----ANLGGERSGHIIILDRSTTGDGLITALELM-RVLKR----SGRNLSDFAKEIP 357 (429)
T ss_pred CCeEEEeCCccHHHHHHHhhcC-----cceeccCCceEEecCCCCCCcHHHHHHHHH-HHHHH----hCCCHHHHHhhch
Confidence 9999999999999999999876 489999999999999999999999999876 99987 8999999999999
Q ss_pred hhhccceeEEEeccChhhHhhhHHHHHHHHHhhhhhcccCCccccccCccccccccccCCCCCCcccccCceEEEEeecc
Q 022948 170 EPLESIELRMNIISEPRYAKAKGSEAIEEFRKYIEEGRLQGWELDSCGDCWVSEGCLVDSNESPAAIDARMYRAKVTDEE 249 (289)
Q Consensus 170 ~~~~~~~~~i~~~~~~~~~~~~~~~~m~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~DGiki~~~~~~ 249 (289)
.++ +...+++|+.. ... +++.|+++.+.. .
T Consensus 358 ~~~-~~~~~v~~~~~--~~~--~~~~~~~~~~~~-----------------------------------------~---- 387 (429)
T PRK14322 358 DYP-QITKNVRRTER--MSL--ENENLRKIVEES-----------------------------------------T---- 387 (429)
T ss_pred hcC-eeeeEeeeccc--ccc--chHHHHHHHHHh-----------------------------------------c----
Confidence 654 33456666531 111 235565542211 0
Q ss_pred cCCceEEEEecCCCCccEEEEEEeCChhHHHHHHHHHhc
Q 022948 250 HGQYGWIHLRQSIHNPNIAVNVQSMVPGGCRSITKSLRD 288 (289)
Q Consensus 250 ~~~~~w~liRpSgTEP~iriy~Ea~~~~~~~~l~~~~~~ 288 (289)
++++|+|||||||||++|||+||++++.++++++.+.+
T Consensus 388 -~~g~w~lvRpS~teP~irv~~Ea~~~~~a~~l~~~~~~ 425 (429)
T PRK14322 388 -SRGYRVVIRPSGTEPVVRITVEGKDREEIEKIVEEISR 425 (429)
T ss_pred -CCCcEEEEccCCCCcEEEEEEEECCHHHHHHHHHHHHH
Confidence 14579999999999999999999999999999999875
No 28
>TIGR01455 glmM phosphoglucosamine mutase. This model describes GlmM, phosphoglucosamine mutase, also designated in MrsA and YhbF E. coli, UreC in Helicobacter pylori, and femR315 or FemD in Staphlococcus aureus. It converts glucosamine-6-phosphate to glucosamine-1-phosphate as part of the pathway toward UDP-N-acetylglucosamine for peptidoglycan and lipopolysaccharides.
Probab=100.00 E-value=3.4e-45 Score=353.20 Aligned_cols=221 Identities=25% Similarity=0.329 Sum_probs=183.6
Q ss_pred hHHHHHHHHHHHhcCCcEEEEecCCCCeEEEEcCCCcccChhHHHHHHHHHHHhhC--CCCeEEEcccCCHHHHHHHHHc
Q 022948 12 KTAMALTRAAVLENNADLGVVFDTDVDRSGVVDNKGNPINGDKLIALMSAIVLKEH--PGTTIVTDARTSMALTKFITDR 89 (289)
Q Consensus 12 ~~~l~~l~~~v~~~~adlGia~D~DgDR~~vvd~~G~~l~~d~~~~Ll~~~~l~~~--~~~~vv~t~~ss~~l~~~a~~~ 89 (289)
+++++.+.+.|++.+||+|++|||||||++++|++|+++++|++++|+++++++.+ ++..||.|++||.+++++|+++
T Consensus 217 ~~~l~~l~~~v~~~~adlGia~DgD~DR~~~vd~~G~~l~~d~~~al~a~~ll~~~~~~~~~vv~~v~ss~~l~~~a~~~ 296 (443)
T TIGR01455 217 STHLDALQKAVREHGADLGIAFDGDADRVLAVDANGRIVDGDQILYIIARALKESGELAGNTVVATVMSNLGLERALEKL 296 (443)
T ss_pred CCCHHHHHHHHhhcCCCEEEEEcCCCceEEEECCCCcEeCHHHHHHHHHHHHHHhcCCCCCcEEEEccCCHHHHHHHHHc
Confidence 46899999999999999999999999999999999999999999999999999863 3447999999999999999999
Q ss_pred CCcEEEeecccHHHHHHHhhcccCCceeeEEeecccceecCCCccCCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHch
Q 022948 90 GGNHCLYRVGYRNVIDKGVHLNEDGIETHLMMETSGHGALKENYFLDDGAYMVVKIIIQMVRMKLEGSDEGIGSLIKDLE 169 (289)
Q Consensus 90 g~~v~~t~vG~k~i~~~~~~~~~~g~~~~~g~E~sg~~~~~~~~~~~Dgi~a~l~ll~e~~~~~~~~~~~~l~~ll~~lp 169 (289)
|+++++|+||++|++++|.+.+ ++||||+|||++|+++.+++|||+++++++ ++++. ++++|+++++++|
T Consensus 297 g~~v~~t~vG~~~i~~~m~~~~-----~~~ggE~sG~~~~~~~~~~~Dgi~a~l~il-e~la~----~~~~l~~l~~~~~ 366 (443)
T TIGR01455 297 GLTLIRTAVGDRYVLEEMRESG-----YNLGGEQSGHIILLDYSTTGDGIVSALQVL-TIMKK----SGSTLSELAAEFV 366 (443)
T ss_pred CCeEEEeCChHHHHHHHHHhcC-----CEEEEcCcceEEecCCCcCCcHHHHHHHHH-HHHHH----hCCCHHHHHhhcc
Confidence 9999999999999999999866 589999999999999999999999999876 99987 7899999999998
Q ss_pred hhhccceeEEEeccChhhHhhhHHHHHHHHHhhhhhcccCCccccccCccccccccccCCCCCCcccccCceEEEEeecc
Q 022948 170 EPLESIELRMNIISEPRYAKAKGSEAIEEFRKYIEEGRLQGWELDSCGDCWVSEGCLVDSNESPAAIDARMYRAKVTDEE 249 (289)
Q Consensus 170 ~~~~~~~~~i~~~~~~~~~~~~~~~~m~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~DGiki~~~~~~ 249 (289)
.++ +.+++|+.. ..+. +...++.++.... ..+ .+ .
T Consensus 367 ~~~---~~~~~~~~~--~~~~-~~~~~~~~~~~~~--------------------------------~~~-~~--~---- 401 (443)
T TIGR01455 367 PYP---QTLVNVRVA--DRKL-AAAEAPAVKAAIE--------------------------------DAE-AE--L---- 401 (443)
T ss_pred ccC---eeeeeEEec--cccc-ccccCHHHHHHHH--------------------------------HHH-HH--h----
Confidence 654 345555532 1110 0111122221111 011 11 2
Q ss_pred cCCceEEEEecCCCCccEEEEEEeCChhHHHHHHHHHhc
Q 022948 250 HGQYGWIHLRQSIHNPNIAVNVQSMVPGGCRSITKSLRD 288 (289)
Q Consensus 250 ~~~~~w~liRpSgTEP~iriy~Ea~~~~~~~~l~~~~~~ 288 (289)
+++||+|||||||||++|||+||+++++++++++.+.+
T Consensus 402 -~~~gW~LiRpS~teP~irv~~Ea~~~e~~~~l~~~~~~ 439 (443)
T TIGR01455 402 -GGTGRILLRPSGTEPLIRVMVEAADEELVQQLADTLAD 439 (443)
T ss_pred -CCCcEEEEecCCCCceEEEEEEECCHHHHHHHHHHHHH
Confidence 35789999999999999999999999999999999875
No 29
>PRK14320 glmM phosphoglucosamine mutase; Provisional
Probab=100.00 E-value=6e-45 Score=351.42 Aligned_cols=220 Identities=21% Similarity=0.270 Sum_probs=183.0
Q ss_pred hHHHHHHHHHHHhcCCcEEEEecCCCCeEEEEcCCCcccChhHHHHHHHHHHHhhCCCCeEEEcccCCHHHHHHHHHcCC
Q 022948 12 KTAMALTRAAVLENNADLGVVFDTDVDRSGVVDNKGNPINGDKLIALMSAIVLKEHPGTTIVTDARTSMALTKFITDRGG 91 (289)
Q Consensus 12 ~~~l~~l~~~v~~~~adlGia~D~DgDR~~vvd~~G~~l~~d~~~~Ll~~~~l~~~~~~~vv~t~~ss~~l~~~a~~~g~ 91 (289)
+++++.+++.|++.+||+|++|||||||++++|++|+++++|++++|+++++++.++...||.++.||.+++++++++|+
T Consensus 217 ~~~l~~l~~~v~~~~adlGia~DgDaDR~~~vd~~G~~l~gd~~~al~a~~l~~~~~~~~vV~~~~~s~~~~~~~~~~g~ 296 (443)
T PRK14320 217 ATCVSNIKKAVKEQKADLGISLDGDADRIIIVDENGQEIDGDGILNILAQYSDICGGTNGIVGTQMTNMSYENHYRANKI 296 (443)
T ss_pred hHhHHHHHHHHHHcCCCEEEEECCCCceEEEECCCCcccCHHHHHHHHHHHHHHhCCCCCEEEecCCcHHHHHHHHHCCC
Confidence 57899999999999999999999999999999999999999999999999988754334799999999999999999999
Q ss_pred cEEEeecccHHHHHHHhhcccCCceeeEEeecccceecCCCccCCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHchhh
Q 022948 92 NHCLYRVGYRNVIDKGVHLNEDGIETHLMMETSGHGALKENYFLDDGAYMVVKIIIQMVRMKLEGSDEGIGSLIKDLEEP 171 (289)
Q Consensus 92 ~v~~t~vG~k~i~~~~~~~~~~g~~~~~g~E~sg~~~~~~~~~~~Dgi~a~l~ll~e~~~~~~~~~~~~l~~ll~~lp~~ 171 (289)
++++||||+++++++|.+.+ ++||||+|||++|++|.+++|||++++++| ++++. ++++|++++...+ +
T Consensus 297 ~~~~t~vG~~~i~~~m~~~~-----~~~ggE~sG~~~~~~~~~~~Dgi~a~~~ll-e~la~----~~~~ls~l~~~~~-~ 365 (443)
T PRK14320 297 PFIRSKVGDRYVLEDLVKYG-----YKIGGESSGHVINLNFGTTGDGLFTAIQLL-AIFSQ----ADKPVSEFKLQGE-L 365 (443)
T ss_pred CEEEecCchHHHHHHHHhCC-----CcEeecCCccEEccCCCCcCCHHHHHHHHH-HHHHH----cCCCHHHHhcccc-c
Confidence 99999999999999999876 489999999999999999999999999876 99988 8999999995432 3
Q ss_pred hccceeEEEeccChhhHhhhHHHHHHHHHhhhhhcccCCccccccCccccccccccCCCCCCcccccCceEEEEeecccC
Q 022948 172 LESIELRMNIISEPRYAKAKGSEAIEEFRKYIEEGRLQGWELDSCGDCWVSEGCLVDSNESPAAIDARMYRAKVTDEEHG 251 (289)
Q Consensus 172 ~~~~~~~i~~~~~~~~~~~~~~~~m~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~DGiki~~~~~~~~ 251 (289)
++ +.+++|+.+.+ .+ . +.++++.+ .+|++++.+ +
T Consensus 366 ~~--~~~~~~~~~~~-~~--~-~~~~~~~~-----------------------------------~~~~~~~~~-----~ 399 (443)
T PRK14320 366 MQ--QTLINVPLTKK-VA--R-EDLQKVAS-----------------------------------DVNDVEKRL-----G 399 (443)
T ss_pred Cc--eEEEEEEecCC-CC--c-chhHHHHH-----------------------------------HHHHHHhhh-----C
Confidence 33 44555553211 11 1 12222211 234455433 2
Q ss_pred CceEEEEecCCCCccEEEEEEeCChhHHHHHHHHHhc
Q 022948 252 QYGWIHLRQSIHNPNIAVNVQSMVPGGCRSITKSLRD 288 (289)
Q Consensus 252 ~~~w~liRpSgTEP~iriy~Ea~~~~~~~~l~~~~~~ 288 (289)
++||+|||||||||++|||+||+++++++++++.+.+
T Consensus 400 ~~gW~LiRpS~teP~~rv~~Ea~s~e~a~~l~~~~~~ 436 (443)
T PRK14320 400 NRGRVLLRPSGTEPVLRVMVEADDKSLATNEAEYLVE 436 (443)
T ss_pred CCceEEEecCCCCceEEEEEecCCHHHHHHHHHHHHH
Confidence 5789999999999999999999999999999998875
No 30
>PRK14323 glmM phosphoglucosamine mutase; Provisional
Probab=100.00 E-value=3.6e-45 Score=352.74 Aligned_cols=216 Identities=23% Similarity=0.269 Sum_probs=181.2
Q ss_pred hHHHHHHHHHHHhcCCcEEEEecCCCCeEEEEcCCCcccChhHHHHHHHHHHHhhCCCCeEEEcccCCHHHHHHHHHcCC
Q 022948 12 KTAMALTRAAVLENNADLGVVFDTDVDRSGVVDNKGNPINGDKLIALMSAIVLKEHPGTTIVTDARTSMALTKFITDRGG 91 (289)
Q Consensus 12 ~~~l~~l~~~v~~~~adlGia~D~DgDR~~vvd~~G~~l~~d~~~~Ll~~~~l~~~~~~~vv~t~~ss~~l~~~a~~~g~ 91 (289)
+++++.+++.|++.+||+|++|||||||++++|++|+++++|++++|++++. .++ .||.|++||.+++++++++|+
T Consensus 218 ~~~l~~l~~~v~~~~adlGia~DgD~DR~~~vD~~G~~i~~d~~~~l~a~~~---~~~-~vV~~v~ss~~~~~~~~~~g~ 293 (440)
T PRK14323 218 STHPEALQRFVVEGGLDLGVAFDGDADRALFVDRRGRLFHGDHMLYLNALAR---GEK-AVVGTVMSNMALEVKLREAGI 293 (440)
T ss_pred CCCHHHHHHHHhccCCCEEEEeCCCcceeEEECCCCcEeCHHHHHHHHHHHh---cCC-cEEEEeCCChHHHHHHHHcCC
Confidence 4688999999999999999999999999999999999999999999999764 233 799999999999999999999
Q ss_pred cEEEeecccHHHHHHHhhcccCCceeeEEeecccceecCCCccCCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHchhh
Q 022948 92 NHCLYRVGYRNVIDKGVHLNEDGIETHLMMETSGHGALKENYFLDDGAYMVVKIIIQMVRMKLEGSDEGIGSLIKDLEEP 171 (289)
Q Consensus 92 ~v~~t~vG~k~i~~~~~~~~~~g~~~~~g~E~sg~~~~~~~~~~~Dgi~a~l~ll~e~~~~~~~~~~~~l~~ll~~lp~~ 171 (289)
++++||||++|++++|.+.+ ++||||+|||++|+++.+++|||+++++++ ++++. ++++|+++++++|.+
T Consensus 294 ~v~~t~vG~~~i~~~m~~~~-----~~~ggE~sG~~~f~~~~~~~Dgi~a~l~~l-e~la~----~~~~ls~l~~~~~~~ 363 (440)
T PRK14323 294 AFHRTAVGDRYVHEKLHAKG-----LTLGGEQSGHVLFLDHAPTGDGVLTALLTL-AAMKA----LGTDLDAWYDALPMY 363 (440)
T ss_pred eEEEeCChHHHHHHHHHhcC-----CeEEEcCcccEEeCCCCCCCcHHHHHHHHH-HHHHH----hCCCHHHHHHhhhhc
Confidence 99999999999999999876 589999999999999999999999999776 99988 799999999999964
Q ss_pred hccceeEEEeccChhhHhhhHHHHHHHHHhhhhhcccCCccccccCccccccccccCCCCCCcccccCceEEEEeecccC
Q 022948 172 LESIELRMNIISEPRYAKAKGSEAIEEFRKYIEEGRLQGWELDSCGDCWVSEGCLVDSNESPAAIDARMYRAKVTDEEHG 251 (289)
Q Consensus 172 ~~~~~~~i~~~~~~~~~~~~~~~~m~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~DGiki~~~~~~~~ 251 (289)
+ +...+++|.. + +++|+.. .+.. .++++.+.+ +
T Consensus 364 ~-~~~~~v~~~~-----k---~~~~~~~--~~~~-------------------------------~i~~~~~~~-----~ 396 (440)
T PRK14323 364 P-QTLLNVRVSD-----K---AKVAADP--RVQE-------------------------------AVREAEARL-----G 396 (440)
T ss_pred C-ceeEEEEeCC-----c---cchhcCH--HHHH-------------------------------HHHHHHhhc-----C
Confidence 4 3345666642 1 1344431 1111 001111223 3
Q ss_pred CceEEEEecCCCCccEEEEEEeCChhHHHHHHHHHhc
Q 022948 252 QYGWIHLRQSIHNPNIAVNVQSMVPGGCRSITKSLRD 288 (289)
Q Consensus 252 ~~~w~liRpSgTEP~iriy~Ea~~~~~~~~l~~~~~~ 288 (289)
++||+|||||||||++|||+||.+++.++++++.+.+
T Consensus 397 ~~gW~LvRpS~TEP~irv~~Ea~s~~~~~~l~~~~~~ 433 (440)
T PRK14323 397 GRGRVNLRPSGTEPLVRVMVEGPDEAEIEEVARELAG 433 (440)
T ss_pred CCeEEEEecCCCccEeEEEEeeCCHHHHHHHHHHHHH
Confidence 5789999999999999999999999999999998875
No 31
>PRK14318 glmM phosphoglucosamine mutase; Provisional
Probab=100.00 E-value=2.4e-44 Score=347.72 Aligned_cols=218 Identities=23% Similarity=0.329 Sum_probs=180.8
Q ss_pred hHHHHHHHHHHHhcCCcEEEEecCCCCeEEEEcCCCcccChhHHHHHHHHHHHhhCC--CCeEEEcccCCHHHHHHHHHc
Q 022948 12 KTAMALTRAAVLENNADLGVVFDTDVDRSGVVDNKGNPINGDKLIALMSAIVLKEHP--GTTIVTDARTSMALTKFITDR 89 (289)
Q Consensus 12 ~~~l~~l~~~v~~~~adlGia~D~DgDR~~vvd~~G~~l~~d~~~~Ll~~~~l~~~~--~~~vv~t~~ss~~l~~~a~~~ 89 (289)
+++++.+++.|++.+||+|++|||||||++++|++|+++++|++++|++.++++.++ +..||+|++||.+++++++++
T Consensus 220 ~~~l~~l~~~v~~~~adlGia~DgD~DR~~~vd~~G~~l~~d~~~~l~a~~l~~~~~~~~~~vV~~v~ss~~~~~~~~~~ 299 (448)
T PRK14318 220 STHLEQLQAAVVAHGADLGLAHDGDADRCLAVDANGNVVDGDQIMAILALAMKEAGELASDTLVATVMSNLGLKLAMREA 299 (448)
T ss_pred CCCHHHHHHHHHhcCCCEEEEecCCCceEEEECCCCcEeCHHHHHHHHHHHHHHhcCCCCCcEEEEecCchHHHHHHHHc
Confidence 578999999999999999999999999999999999999999999999988877642 347999999999999999999
Q ss_pred CCcEEEeecccHHHHHHHhhcccCCceeeEEeecccceecCCCccCCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHch
Q 022948 90 GGNHCLYRVGYRNVIDKGVHLNEDGIETHLMMETSGHGALKENYFLDDGAYMVVKIIIQMVRMKLEGSDEGIGSLIKDLE 169 (289)
Q Consensus 90 g~~v~~t~vG~k~i~~~~~~~~~~g~~~~~g~E~sg~~~~~~~~~~~Dgi~a~l~ll~e~~~~~~~~~~~~l~~ll~~lp 169 (289)
|+++++||||++|++++|.+.+ ++||||+|||++|+++.+++|||+++++++ ++++. ++++|+++++++|
T Consensus 300 g~~v~~t~vG~~~i~~~~~~~~-----~~~ggE~sG~~~~~~~~~~~Dgi~a~l~il-e~la~----~~~~ls~l~~~~~ 369 (448)
T PRK14318 300 GITVVTTAVGDRYVLEEMRAGG-----YSLGGEQSGHIVMPDHATTGDGILTGLRLM-ARMAQ----TGKSLAELASAMT 369 (448)
T ss_pred CCcEEEeCChHHHHHHHHHhcC-----cEEEEcCcCcEEecCCCCCCCHHHHHHHHH-HHHHH----hCCCHHHHHhhhh
Confidence 9999999999999999998766 589999999999999999999999999876 89887 8999999998876
Q ss_pred hhhccceeEEEeccChhhHhhhHHHHHH--HHHhhhhhcccCCccccccCccccccccccCCCCCCcccccCceEEEEee
Q 022948 170 EPLESIELRMNIISEPRYAKAKGSEAIE--EFRKYIEEGRLQGWELDSCGDCWVSEGCLVDSNESPAAIDARMYRAKVTD 247 (289)
Q Consensus 170 ~~~~~~~~~i~~~~~~~~~~~~~~~~m~--~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~DGiki~~~~ 247 (289)
.+ +.. ..+|+.+ . ++++|+ .+.+... .+| +.+
T Consensus 370 ~~-p~~--~~~~~~~----~--~~~~~~~~~~~~~i~--------------------------------~~~---~~~-- 403 (448)
T PRK14318 370 VL-PQV--LINVPVV----D--KTTAATAPSVRAAVA--------------------------------RAE---AEL-- 403 (448)
T ss_pred hc-Ccc--eeeeecC----C--ccchhccHHHHHHHH--------------------------------HHH---hhh--
Confidence 43 222 2344421 1 123433 1211110 111 112
Q ss_pred cccCCceEEEEecCCCCccEEEEEEeCChhHHHHHHHHHhc
Q 022948 248 EEHGQYGWIHLRQSIHNPNIAVNVQSMVPGGCRSITKSLRD 288 (289)
Q Consensus 248 ~~~~~~~w~liRpSgTEP~iriy~Ea~~~~~~~~l~~~~~~ 288 (289)
+++||+|||||||||++|||+||++++.++++++++.+
T Consensus 404 ---~~~gw~lvRpS~teP~irv~~Ea~~~~~a~~l~~~~~~ 441 (448)
T PRK14318 404 ---GDTGRVLLRPSGTEPLVRVMVEAADEETARRVAGRLAD 441 (448)
T ss_pred ---cCCeEEEEeeCCCCcEEEEEEeECCHHHHHHHHHHHHH
Confidence 24789999999999999999999999999999998875
No 32
>PRK14319 glmM phosphoglucosamine mutase; Provisional
Probab=100.00 E-value=1e-43 Score=341.73 Aligned_cols=212 Identities=21% Similarity=0.276 Sum_probs=176.9
Q ss_pred hHHHHHHHHHHHhcCCcEEEEecCCCCeEEEEcCCCcccChhHHHHHHHHHHHhhCC--CCeEEEcccCCHHHHHHHHHc
Q 022948 12 KTAMALTRAAVLENNADLGVVFDTDVDRSGVVDNKGNPINGDKLIALMSAIVLKEHP--GTTIVTDARTSMALTKFITDR 89 (289)
Q Consensus 12 ~~~l~~l~~~v~~~~adlGia~D~DgDR~~vvd~~G~~l~~d~~~~Ll~~~~l~~~~--~~~vv~t~~ss~~l~~~a~~~ 89 (289)
+++++.+++.+. ++|+|++|||||||++++|++|+++++|++++|+++++++.++ +..||.|++||.+++++++++
T Consensus 207 ~~~~~~l~~~v~--~~dlGia~DgDaDR~~~vd~~G~~i~~d~~~~l~a~~ll~~~~~~~~~vV~~v~ss~~~~~~~~~~ 284 (430)
T PRK14319 207 STHPENAKEKIT--NHKIAILHDGDGDRCIFLDEKGQEFHGDKIIGLTAKHLKKEGRLKNDVVVGTILSNMGLEVFLKNN 284 (430)
T ss_pred CCCHHHHHHHHH--hcCEEEEEcCCCceEEEECCCCCEeChhHHHHHHHHHHHHhCCCCCCeEEEeecCchHHHHHHHHC
Confidence 356667777773 5699999999999999999999999999999999999988542 346999999999999999999
Q ss_pred CCcEEEeecccHHHHHHHhhcccCCceeeEEeecccceecCCCccCCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHch
Q 022948 90 GGNHCLYRVGYRNVIDKGVHLNEDGIETHLMMETSGHGALKENYFLDDGAYMVVKIIIQMVRMKLEGSDEGIGSLIKDLE 169 (289)
Q Consensus 90 g~~v~~t~vG~k~i~~~~~~~~~~g~~~~~g~E~sg~~~~~~~~~~~Dgi~a~l~ll~e~~~~~~~~~~~~l~~ll~~lp 169 (289)
|+++++||||++|++++|.+.+ ++||||+|||++|+++++++|||+++++++ ++++. ++++|+++++++|
T Consensus 285 g~~v~~t~~G~~~i~~~m~~~~-----~~~ggE~sG~~~f~~~~~~~Dgi~a~l~ll-e~l~~----~~~~ls~l~~~~p 354 (430)
T PRK14319 285 GIKVVRTKVGDRYVLEEMLKLN-----ATLGGERSGHIIYLDKSTTGDGLITALETL-SVMVK----SGKKLSDLSNEIP 354 (430)
T ss_pred CCcEEEeCCchHHHHHHHHHcC-----CEEEEcccceEEEhhccCCCcHHHHHHHHH-HHHHH----hCCCHHHHHhhcc
Confidence 9999999999999999999876 489999999999999999999999999876 99988 8999999999999
Q ss_pred hhhccceeEEEeccChhhHhhhHHHHHHHHHhhhhhcccCCccccccCccccccccccCCCCCCcccccCceEEEEeecc
Q 022948 170 EPLESIELRMNIISEPRYAKAKGSEAIEEFRKYIEEGRLQGWELDSCGDCWVSEGCLVDSNESPAAIDARMYRAKVTDEE 249 (289)
Q Consensus 170 ~~~~~~~~~i~~~~~~~~~~~~~~~~m~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~DGiki~~~~~~ 249 (289)
.++ +...++.+... ..+ +. +... ..+|| +
T Consensus 355 ~~~-~~~~~v~~k~~---------~~~-~~-~~~~-------------------------------~~~~~----~---- 383 (430)
T PRK14319 355 DYP-QVMINVKVKNK---------EVY-KH-KEVF-------------------------------KLIKS----I---- 383 (430)
T ss_pred ccc-eeeEEEEeCCc---------ccc-cc-HHHH-------------------------------HHHhC----C----
Confidence 643 33455554421 011 10 1111 12334 3
Q ss_pred cCCceEEEEecCCCCccEEEEEEeCChhHHHHHHHHHhc
Q 022948 250 HGQYGWIHLRQSIHNPNIAVNVQSMVPGGCRSITKSLRD 288 (289)
Q Consensus 250 ~~~~~w~liRpSgTEP~iriy~Ea~~~~~~~~l~~~~~~ 288 (289)
++||+|||||||||++|||+||+++++++++++.+.+
T Consensus 384 --~~gw~LiRpS~TeP~irv~~Ea~~~~~a~~l~~~~~~ 420 (430)
T PRK14319 384 --KDYRVIVRPSGTEPVVRVLVEGPDEEYITNIANDIAG 420 (430)
T ss_pred --CCeEEEEecCCCccEEEEEEEeCCHHHHHHHHHHHHH
Confidence 4689999999999999999999999999999998875
No 33
>cd03086 PGM3 PGM3 (phosphoglucomutase 3), also known as PAGM (phosphoacetylglucosamine mutase) and AGM1 (N-acetylglucosamine-phosphate mutase), is an essential enzyme found in eukaryotes that reversibly catalyzes the conversion of GlcNAc-6-phosphate into GlcNAc-1-phosphate as part of the UDP-N-acetylglucosamine (UDP-GlcNAc) biosynthetic pathway. UDP-GlcNAc is an essential metabolite that serves as the biosynthetic precursor of many glycoproteins and mucopolysaccharides. AGM1 is a member of the alpha-D-phosphohexomutase superfamily, which catalyzes the intramolecular phosphoryl transfer of sugar substrates. The alpha-D-phosphohexomutases have four domains with a centrally located active site formed by four loops, one from each domain. All four domains are included in this alignment model.
Probab=100.00 E-value=1.6e-42 Score=338.28 Aligned_cols=235 Identities=13% Similarity=0.124 Sum_probs=192.1
Q ss_pred CCCCCCChHHHHHHHHHHHhcC----CcEEEEecCCCCeEEEEcCCC----cccChhHHHHHHHHHHHhhC----C-C--
Q 022948 5 HIPNPEDKTAMALTRAAVLENN----ADLGVVFDTDVDRSGVVDNKG----NPINGDKLIALMSAIVLKEH----P-G-- 69 (289)
Q Consensus 5 ~~P~P~~~~~l~~l~~~v~~~~----adlGia~D~DgDR~~vvd~~G----~~l~~d~~~~Ll~~~~l~~~----~-~-- 69 (289)
+.|+|-.+++++.+++.+++.+ +|+|++|||||||++++|++| ++++||++++|+++++++.. + +
T Consensus 228 ~~n~~~ga~~l~~l~~~v~~~~~~~~adlgiA~DGDADRl~~vd~~g~~~~~~l~GD~i~aL~a~~ll~~~~~~~~~~~~ 307 (513)
T cd03086 228 LLNDGCGADYVKTKQKPPRGFELKPPGVRCCSFDGDADRLVYFYPDSSNKFHLLDGDKIATLFAKFIKELLKKAGEELKL 307 (513)
T ss_pred cCCCCcccccHHHHHHHHHhcCCCCCccEEEEECCCCCcEEEEEecCCCceEEECHHHHHHHHHHHHHHhccccCCCCCC
Confidence 3334434789999999999987 999999999999999999999 99999999999999998742 1 2
Q ss_pred -CeEEEcccCCHHHHHHHHH-cCCcEEEeecccHHHHHHHhhcccCCceeeEEeecccc--eecCCC-------------
Q 022948 70 -TTIVTDARTSMALTKFITD-RGGNHCLYRVGYRNVIDKGVHLNEDGIETHLMMETSGH--GALKEN------------- 132 (289)
Q Consensus 70 -~~vv~t~~ss~~l~~~a~~-~g~~v~~t~vG~k~i~~~~~~~~~~g~~~~~g~E~sg~--~~~~~~------------- 132 (289)
..||.|++||..+.+++++ +|+++++|+||+||+.++|++.+ +.+|||+||| ++|+++
T Consensus 308 ~~~VV~tv~sn~~~~~~l~~~~G~~~~~t~vG~k~v~~~m~e~~-----~~~ggE~sGHgtvif~~~~~~~~~~~~~~~~ 382 (513)
T cd03086 308 TIGVVQTAYANGASTKYLEDVLKVPVVCTPTGVKHLHHAAEEFD-----IGVYFEANGHGTVLFSESALAKIEENSSLSD 382 (513)
T ss_pred CcEEEEEeccchHHHHHHHHHcCceEEEeCCcHHHHHHHHHHhC-----cceEEeccCCEEEEECchHHhhhhhhccccc
Confidence 2699999999999999999 99999999999999999999976 4799999999 999998
Q ss_pred -----------------ccCCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHchhhhccceeEEEeccChhhHhhhHHHH
Q 022948 133 -----------------YFLDDGAYMVVKIIIQMVRMKLEGSDEGIGSLIKDLEEPLESIELRMNIISEPRYAKAKGSEA 195 (289)
Q Consensus 133 -----------------~~~~Dgi~a~l~ll~e~~~~~~~~~~~~l~~ll~~lp~~~~~~~~~i~~~~~~~~~~~~~~~~ 195 (289)
++++|||+++++++ ++++. .+++++++++.++. +++...++++... .+ .++
T Consensus 383 ~~~~~~~~l~~~~~~~n~~~gDgi~~al~vl-~~l~~----~~~~lsel~~~y~~-~p~~~~~v~v~~~---~~---~~~ 450 (513)
T cd03086 383 EQEKAAKTLLAFSRLINQTVGDAISDMLAVE-LILAA----LGWSPQDWDNLYTD-LPNRQLKVKVPDR---SV---IKT 450 (513)
T ss_pred hhhhHHHHHHHHHHhhCCCCcHHHHHHHHHH-HHHHH----hCCCHHHHHhhchh-cCeeeeEEEecCc---cc---hhh
Confidence 66899999999776 88887 79999999998764 4455667777532 11 011
Q ss_pred HHHHHhhhhhcccCCccccccCccccccccccCCCCCCcccccCceEEEEeecccCCceEEEEecCCCCccEEEEEEeCC
Q 022948 196 IEEFRKYIEEGRLQGWELDSCGDCWVSEGCLVDSNESPAAIDARMYRAKVTDEEHGQYGWIHLRQSIHNPNIAVNVQSMV 275 (289)
Q Consensus 196 m~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~DGiki~~~~~~~~~~~w~liRpSgTEP~iriy~Ea~~ 275 (289)
.+.-...... ..-+.++||+++.+ ++||++||||||||++|||+||++
T Consensus 451 ~~~e~~~~~p--------------------------~~l~~~iDG~~~~~------~~gr~lVRpSGTEp~iRvyaEA~t 498 (513)
T cd03086 451 TDAERRLVEP--------------------------KGLQDKIDAIVAKY------NNGRAFVRPSGTEDVVRVYAEAAT 498 (513)
T ss_pred hhHHhhcccc--------------------------HHHHHHHHHHHhcC------CCeeEEEecCCCCcEEEEEEEeCC
Confidence 1110000000 01245899999999 789999999999999999999999
Q ss_pred hhHHHHHHHHHhc
Q 022948 276 PGGCRSITKSLRD 288 (289)
Q Consensus 276 ~~~~~~l~~~~~~ 288 (289)
++.++++++++.+
T Consensus 499 ~~~~~~l~~~i~~ 511 (513)
T cd03086 499 QEEADELANEVAE 511 (513)
T ss_pred HHHHHHHHHHHHh
Confidence 9999999998865
No 34
>KOG1220 consensus Phosphoglucomutase/phosphomannomutase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.6e-41 Score=322.84 Aligned_cols=266 Identities=26% Similarity=0.281 Sum_probs=208.7
Q ss_pred CCCC-CCCCCCChHHHHHHHHHHHhcCCcEEEEecCCCCeEEEEcC---CCcccChhHHHHHHHHHHHhhCCCCeE----
Q 022948 1 MFPN-HIPNPEDKTAMALTRAAVLENNADLGVVFDTDVDRSGVVDN---KGNPINGDKLIALMSAIVLKEHPGTTI---- 72 (289)
Q Consensus 1 ~Fp~-~~P~P~~~~~l~~l~~~v~~~~adlGia~D~DgDR~~vvd~---~G~~l~~d~~~~Ll~~~~l~~~~~~~v---- 72 (289)
.||+ +.||||++.+|+...+.+.++++|+++++|||+||+.+++. +|+.++||++++|++.++++++++..+
T Consensus 287 ~FPt~~~PNPEek~aL~ls~~~a~~n~~dlvlanDpDaDR~avaek~~G~wr~fnGNElgALl~~~~le~~k~~~~~~~~ 366 (607)
T KOG1220|consen 287 MFPTVPFPNPEEKGALDLSIKAALKNSADLVLANDPDADRFAVAEKVSGEWRVFNGNELGALLSWWVLEEHKGSTPVQDV 366 (607)
T ss_pred CCCCCCCCCcchHHHHHHHHHHHhccCCcEEEecCCCcchhhheeccCCcceeccchHHHHHHHHHHHHhccCCCccchh
Confidence 5999 58999999999999999999999999999999999999976 899999999999999999999876443
Q ss_pred --EEcccCCHHHHHHHHHcCCcEEEeecccHHHHHHHhhcccCCceeeEEeecccceecCCCccCCCHHHHHHHHHHHHH
Q 022948 73 --VTDARTSMALTKFITDRGGNHCLYRVGYRNVIDKGVHLNEDGIETHLMMETSGHGALKENYFLDDGAYMVVKIIIQMV 150 (289)
Q Consensus 73 --v~t~~ss~~l~~~a~~~g~~v~~t~vG~k~i~~~~~~~~~~g~~~~~g~E~sg~~~~~~~~~~~Dgi~a~l~ll~e~~ 150 (289)
..+.+||.++..+|+..|++.++|.|||||+.+++.+..++|++++||+|+|+||+|+++++.+||++|+++++ +|+
T Consensus 367 ~ml~s~vSs~l~~~ia~~eGf~~~~tltGFKwvgnrAieL~k~G~~v~fA~Ees~gym~g~~~~dkDGv~a~v~~a-~~~ 445 (607)
T KOG1220|consen 367 SMLNSTVSSGLTRFIAEIEGFHHEETLTGFKWVGNRAIELEKDGKEVHFAFEESIGYMFGENHLDKDGVSAAVKFA-SMA 445 (607)
T ss_pred hhhhhHHHHHHHHHHHHHhCceeeeccccchhhhHHHHHHHhcCceeeeeehhhcCcccccCccCcchHHHHHHHH-HHH
Confidence 46778999999999999999999999999999999999989999999999999999999999999999999776 888
Q ss_pred HHHhcCCCCCHHHHHHHchhhhcccee---EEEeccChhhHhhhHHHHHHHHHhhhhhcccCCccccccC-ccccccccc
Q 022948 151 RMKLEGSDEGIGSLIKDLEEPLESIEL---RMNIISEPRYAKAKGSEAIEEFRKYIEEGRLQGWELDSCG-DCWVSEGCL 226 (289)
Q Consensus 151 ~~~~~~~~~~l~~ll~~lp~~~~~~~~---~i~~~~~~~~~~~~~~~~m~~l~~~~~~~~~~~~~v~~~~-~~~~~~~~~ 226 (289)
..+....+.||++.+.++++.|.++.. .+-|.. ++ +.+.+.+.+++..-+..+...+| -+.+...|+
T Consensus 446 ~~lr~~~~~sl~e~l~~l~e~yg~~~~~~~y~l~~~--pe-------~~~~lf~~lR~~~~~~~yp~~ig~e~ev~~~rd 516 (607)
T KOG1220|consen 446 CRLRLAGNLSLSEVLEDLYERYGYHSTANSYRLCID--PE-------VIKALFDGLRNYDTGYIYPKKIGEEFEVVNVRD 516 (607)
T ss_pred HHHHHhcCCCHHHHHHHHHHhhCccceeeEEEEecC--Cc-------hhHHHHHHHhhccccccccchhcccceeeeeee
Confidence 886556688999999999888743332 222332 11 23333333332111222333444 444455556
Q ss_pred cCCCCCCc----------ccccCceEEEEeecccCCceEEEEecCCCCccEEEEEEeCChhHHHH
Q 022948 227 VDSNESPA----------AIDARMYRAKVTDEEHGQYGWIHLRQSIHNPNIAVNVQSMVPGGCRS 281 (289)
Q Consensus 227 ~~~~~~~~----------~~~~DGiki~~~~~~~~~~~w~liRpSgTEP~iriy~Ea~~~~~~~~ 281 (289)
++++++.+ -...+.|.+.+ .+++|+++|.|+|||++++|+|+..+..+..
T Consensus 517 lT~g~d~s~~d~ka~lpv~~ss~~vTf~~-----~~~~~~tlR~SgtePkik~yie~c~~~~~~~ 576 (607)
T KOG1220|consen 517 LTTGYDVSSPDHKAVLPVSTSSQMVTFTF-----NNGGVVTLRTSGTEPKIKLYIEACLPPDAKS 576 (607)
T ss_pred ceeeeecCCCCCccccccccccceeEEec-----cCcEEEEEecCCCCcchhhhHHhhCCccccC
Confidence 65554321 12345555555 5679999999999999999999965444443
No 35
>PTZ00302 N-acetylglucosamine-phosphate mutase; Provisional
Probab=100.00 E-value=1.5e-37 Score=305.28 Aligned_cols=230 Identities=15% Similarity=0.172 Sum_probs=186.4
Q ss_pred CCCCCCChHHHHHHHHHHHhcCCcEE------EEecCCCCeEEEEcC--CC----cccChhHHHHHHHHHHHhh--C--C
Q 022948 5 HIPNPEDKTAMALTRAAVLENNADLG------VVFDTDVDRSGVVDN--KG----NPINGDKLIALMSAIVLKE--H--P 68 (289)
Q Consensus 5 ~~P~P~~~~~l~~l~~~v~~~~adlG------ia~D~DgDR~~vvd~--~G----~~l~~d~~~~Ll~~~~l~~--~--~ 68 (289)
+.|+|-.+++++.+++.+++.++|+| ++|||||||++++|+ +| ++|+||++++|+|.++++. . +
T Consensus 287 ~lN~~cGad~vk~lq~~p~~~~ad~G~~~~~~~sfDGDADRlv~~d~~~~g~~~~~lldGDkI~~L~A~~l~~~l~~~~~ 366 (585)
T PTZ00302 287 LLNDKCGADYVQKTRKPPRAMKEWPGDEETRVASFDGDADRLVYFFPDKDGDDKWVLLDGDRIAILYAMLIKKLLGKIQL 366 (585)
T ss_pred CCCCCCccccHHHHHHHHHhcCCCcCccCCeeEEECCCCCeEEEEEecCCCCccceecCHHHHHHHHHHHHHHHhhhcCC
Confidence 45566667899999999999999999 999999999999998 78 9999999999999999763 2 2
Q ss_pred CC----eEEEcccCCHHHHHHHHH-cC-CcEEEeecccHHHHHHHhhcccCCceeeEEeecccc--eecCC---------
Q 022948 69 GT----TIVTDARTSMALTKFITD-RG-GNHCLYRVGYRNVIDKGVHLNEDGIETHLMMETSGH--GALKE--------- 131 (289)
Q Consensus 69 ~~----~vv~t~~ss~~l~~~a~~-~g-~~v~~t~vG~k~i~~~~~~~~~~g~~~~~g~E~sg~--~~~~~--------- 131 (289)
+. .||.|++||.++++++++ +| ++|++||||.||+.++|.+.+ +.+|||.||| ++|++
T Consensus 367 ~~~l~igVVqTayaNgast~yl~~~lg~~~v~~t~tGvk~l~~~a~e~d-----i~iyfEaNGHGTvif~~~~~~~~~~~ 441 (585)
T PTZ00302 367 KKKLDIGVVQTAYANGASTNYLNELLGRLRVYCAPTGVKNLHPKAHKYD-----IGIYFEANGHGTVLFNEKALAEWAKF 441 (585)
T ss_pred CCCccceEEEeccCCHHHHHHHHHhcCCeeEEEEeCchHHHHHHHHhcC-----CeEEEccCCCEEEEECcHHHhhhhhh
Confidence 32 699999999999999999 89 999999999999999999977 5799999999 99999
Q ss_pred ---------------------CccCCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHchhhhccceeEEEeccCh----h
Q 022948 132 ---------------------NYFLDDGAYMVVKIIIQMVRMKLEGSDEGIGSLIKDLEEPLESIELRMNIISEP----R 186 (289)
Q Consensus 132 ---------------------~~~~~Dgi~a~l~ll~e~~~~~~~~~~~~l~~ll~~lp~~~~~~~~~i~~~~~~----~ 186 (289)
++..+|||++++.++ ++++. .+.++++|++.++ .+|+...++.+.... .
T Consensus 442 ~~~~~~~~~a~~~L~~~~~l~n~~vGDai~~~L~v~-~iL~~----~~~sl~e~~~~y~-dlP~~~~kv~v~~r~~i~t~ 515 (585)
T PTZ00302 442 LAKQNALNSACRQLEKFLRLFNQTIGDAISDLLAVE-LALAF----LGLSFQDWLNLYT-DLPSRQDKVTVKDRTLITNT 515 (585)
T ss_pred ccccchhhhHHHHHHHhHhhhcCCCccHHHHHHHHH-HHHHh----hCCCHHHHHhhcc-cCCceeeeeEeccCcccccc
Confidence 677899999999766 78877 7999999998554 345567777775421 1
Q ss_pred hHhhhHHHHH--HHHHhhhhhcccCCccccccCccccccccccCCCCCCcccccCceEEEEeecccCCceEEEEecCCCC
Q 022948 187 YAKAKGSEAI--EEFRKYIEEGRLQGWELDSCGDCWVSEGCLVDSNESPAAIDARMYRAKVTDEEHGQYGWIHLRQSIHN 264 (289)
Q Consensus 187 ~~~~~~~~~m--~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~DGiki~~~~~~~~~~~w~liRpSgTE 264 (289)
+.+ ..++ ..|++ .+|++.+.+ .++||++|||||||
T Consensus 516 d~e---~~~v~P~~Lq~-----------------------------------~id~~~~~~-----~~~gr~lvRpSGTE 552 (585)
T PTZ00302 516 EDE---TRLLEPKGLQD-----------------------------------KIDAIVSKY-----DNAARAFIRPSGTE 552 (585)
T ss_pred hHh---hhcccHHHHHH-----------------------------------HHHHHHhhc-----cCCceEEEEcCCCC
Confidence 110 0111 22322 223333233 35789999999999
Q ss_pred ccEEEEEEeCChhHHHHHHHHHhc
Q 022948 265 PNIAVNVQSMVPGGCRSITKSLRD 288 (289)
Q Consensus 265 P~iriy~Ea~~~~~~~~l~~~~~~ 288 (289)
|++|||+||++++.++++++++.+
T Consensus 553 p~vRvyaEA~t~~~a~~l~~~v~~ 576 (585)
T PTZ00302 553 PVVRVYAEAPTLEQADELANEVKG 576 (585)
T ss_pred cEEEEEEEECCHHHHHHHHHHHHH
Confidence 999999999999999999988753
No 36
>PLN02895 phosphoacetylglucosamine mutase
Probab=100.00 E-value=2.6e-37 Score=301.80 Aligned_cols=226 Identities=14% Similarity=0.209 Sum_probs=183.9
Q ss_pred CCCCCCChHHHHHHHHHHHhcCC---cEE---EEecCCCCeEEEEcCCC-----cccChhHHHHHHHHHHHhh----C--
Q 022948 5 HIPNPEDKTAMALTRAAVLENNA---DLG---VVFDTDVDRSGVVDNKG-----NPINGDKLIALMSAIVLKE----H-- 67 (289)
Q Consensus 5 ~~P~P~~~~~l~~l~~~v~~~~a---dlG---ia~D~DgDR~~vvd~~G-----~~l~~d~~~~Ll~~~~l~~----~-- 67 (289)
+.|+|-.+.+++.++ .+++ ++ |+| ++|||||||++++|++| ++++||++++|+|.++++. .
T Consensus 252 ~lN~~cGad~v~~lq-~vp~-~~~~~d~G~~~~sfDGDADRlv~~d~~g~~~~~~llDGDkI~~L~A~~l~~~l~~~~~~ 329 (562)
T PLN02895 252 VLNEGVGADFVQKEK-VPPT-GFASKDVGLRCASLDGDADRLVYFYVSSAGSKIDLLDGDKIASLFALFIKEQLRILNGN 329 (562)
T ss_pred CCCCCCccCcHHHHH-hhhc-cCCccCCCCcceEEcCCCCEEEEEEcCCCcccCeEeCHHHHHHHHHHHHHHHhhhcccc
Confidence 567777778899888 7777 88 999 99999999999999988 8999999999999999765 1
Q ss_pred ----C-----CCeEEEcccCCHHHHHHHHH-cCCcEEEeecccHHHHHHHhhcccCCceeeEEeecccc--eecCCCcc-
Q 022948 68 ----P-----GTTIVTDARTSMALTKFITD-RGGNHCLYRVGYRNVIDKGVHLNEDGIETHLMMETSGH--GALKENYF- 134 (289)
Q Consensus 68 ----~-----~~~vv~t~~ss~~l~~~a~~-~g~~v~~t~vG~k~i~~~~~~~~~~g~~~~~g~E~sg~--~~~~~~~~- 134 (289)
+ +..||.|++||.++++++++ +|+++++||||.||+.++|.+.+ +.+|||.||| ++|+++..
T Consensus 330 ~~~~~~~~~l~~gVVqTayaNgast~yl~~~lg~~v~~t~tGvk~l~~~a~e~d-----igvyfEaNGHGTviFs~~~~~ 404 (562)
T PLN02895 330 GNEKPEELLVRLGVVQTAYANGASTAYLKQVLGLEVVCTPTGVKYLHEAAAEFD-----IGVYFEANGHGTVLFSERFLD 404 (562)
T ss_pred cccccccccCCCeEEEeccccHHHHHHHHHhcCCeEEEEeCchHHHHHHHHhcC-----ceEEEccCCCeEEEEChHHHH
Confidence 2 33799999999999999999 99999999999999999999976 5799999999 99998765
Q ss_pred -----------------------------------CCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHchhhhccceeEE
Q 022948 135 -----------------------------------LDDGAYMVVKIIIQMVRMKLEGSDEGIGSLIKDLEEPLESIELRM 179 (289)
Q Consensus 135 -----------------------------------~~Dgi~a~l~ll~e~~~~~~~~~~~~l~~ll~~lp~~~~~~~~~i 179 (289)
.+|||+++++++ ++++. .+.++++|++.++ .+|+...++
T Consensus 405 ~~~~~~~~~~~~~~~~~~~~a~~~L~~~~~linq~vGDai~~~L~vl-~iL~~----~~~sl~e~~~~y~-dlP~~~~kv 478 (562)
T PLN02895 405 WLEAAAAELSSKAKGSEAHKAARRLLAVSRLINQAVGDALSGLLLVE-AILQY----RGWSLAEWNALYQ-DLPSRQLKV 478 (562)
T ss_pred HHhhhhhccccccccchhhHHHHHHHHHHHhhcCCccHHHHHHHHHH-HHHHH----hCCCHHHHHhhCc-cCCceeEee
Confidence 799999999776 78877 7999999999554 345566777
Q ss_pred EeccCh----hhHhhhHHHHH--HHHHhhhhhcccCCccccccCccccccccccCCCCCCcccccCceEE-EEeecccCC
Q 022948 180 NIISEP----RYAKAKGSEAI--EEFRKYIEEGRLQGWELDSCGDCWVSEGCLVDSNESPAAIDARMYRA-KVTDEEHGQ 252 (289)
Q Consensus 180 ~~~~~~----~~~~~~~~~~m--~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~DGiki-~~~~~~~~~ 252 (289)
.+...+ .+.+ ..++ ..|. ..+| .++ .+ +
T Consensus 479 ~V~dr~~~~t~~~e---~~~v~P~~Lq-----------------------------------~~ID-~~v~~~------~ 513 (562)
T PLN02895 479 KVADRTAITTTDAE---TVVVRPAGLQ-----------------------------------DAID-AEVAKY------P 513 (562)
T ss_pred EEccCccccccchh---hhcccHHHHH-----------------------------------HHHH-HHhccc------C
Confidence 775321 1110 0111 2221 1344 444 56 6
Q ss_pred ceEEEEecCCCCccEEEEEEeCChhHHHHHHHHHhc
Q 022948 253 YGWIHLRQSIHNPNIAVNVQSMVPGGCRSITKSLRD 288 (289)
Q Consensus 253 ~~w~liRpSgTEP~iriy~Ea~~~~~~~~l~~~~~~ 288 (289)
+||++||||||||++|||+||++++.++++++++.+
T Consensus 514 ~Gr~lvRpSGTEp~vRv~~Ea~t~~~~~~l~~~v~~ 549 (562)
T PLN02895 514 RGRAFVRPSGTEDVVRVYAEASTQEAADSLAREVAR 549 (562)
T ss_pred CceEEEEcCCCCcEEEEEEEECCHHHHHHHHHHHHH
Confidence 789999999999999999999999999999988753
No 37
>COG0033 Pgm Phosphoglucomutase [Carbohydrate transport and metabolism]
Probab=99.95 E-value=1.1e-27 Score=222.12 Aligned_cols=257 Identities=13% Similarity=0.078 Sum_probs=181.9
Q ss_pred CCCCCCCCCCC---hHHHHHHHHHHH-hcCCcEEEEecCCCCeEEEEcCCCcccChhHHHHHHHHHHHhhCC----CCeE
Q 022948 1 MFPNHIPNPED---KTAMALTRAAVL-ENNADLGVVFDTDVDRSGVVDNKGNPINGDKLIALMSAIVLKEHP----GTTI 72 (289)
Q Consensus 1 ~Fp~~~P~P~~---~~~l~~l~~~v~-~~~adlGia~D~DgDR~~vvd~~G~~l~~d~~~~Ll~~~~l~~~~----~~~v 72 (289)
.|.+++|+|.- .++-..+..+++ ..+.|||.+.|+||||-+++.....+++++..+++++.++....+ ...|
T Consensus 243 ~F~~l~~D~ni~~~~ss~~~ma~l~~~~d~~d~~aanD~DgDR~~Iv~~~~~~~nPn~~lAv~~~y~~~~~~~~~g~~~v 322 (524)
T COG0033 243 DFMGLDPDGNIRMDCSSPCAMAGLLRLRDKYDFAAANDGDGDRHGIVTPGAGLMNPNHSLAVAIEYLFLHRPYWGGIVAV 322 (524)
T ss_pred cccCCCCCCCEeEecCcHHHHHHhhccccccccccccCCCcccceeecCCCcccCchHHHHHHHHHHHhCCCccccceee
Confidence 48888999974 121112333333 388999999999999999999887899999999999999877643 2469
Q ss_pred EEcccCCHHHHHHHHHcCCcEEEeecccHHHHHHHhhcccCCceeeEEeecccceecCCCccCCCHHHHHHHHHHHHHHH
Q 022948 73 VTDARTSMALTKFITDRGGNHCLYRVGYRNVIDKGVHLNEDGIETHLMMETSGHGALKENYFLDDGAYMVVKIIIQMVRM 152 (289)
Q Consensus 73 v~t~~ss~~l~~~a~~~g~~v~~t~vG~k~i~~~~~~~~~~g~~~~~g~E~sg~~~~~~~~~~~Dgi~a~l~ll~e~~~~ 152 (289)
..|+.||.+++++++.+|.+++++||||||+.+.+.... +-||||||-| ..|.+.+|++++.++.+ .+|+-
T Consensus 323 ~ktl~sS~~iDRV~~~lGr~lyEvPvG~K~F~~~l~~g~-----~~~~GEESaG---a~~lRek~g~Wa~~~~~-~Ilal 393 (524)
T COG0033 323 GKTLVSSAAIDRVVAKLGRGLYEVPVGFKWFVDGLDAGS-----FGFGGEESAG---ASFLREKGGVWATDKDG-NILAL 393 (524)
T ss_pred eeccccHHHHHHHHHHhCCceEEcCCcceeeeccccccc-----eeeccccccc---ccceecCCCceeeechh-HHHHH
Confidence 999999999999999999999999999999999987654 6799999954 45566677776644433 22222
Q ss_pred H----hcCCCCCHHHHHHHchhhh-ccceeEEEeccChhhHhhhHHHHHHHHHhhhhhcccCCccccccCcccccccccc
Q 022948 153 K----LEGSDEGIGSLIKDLEEPL-ESIELRMNIISEPRYAKAKGSEAIEEFRKYIEEGRLQGWELDSCGDCWVSEGCLV 227 (289)
Q Consensus 153 ~----~~~~~~~l~~ll~~lp~~~-~~~~~~i~~~~~~~~~~~~~~~~m~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 227 (289)
+ .+..++..++..+++-+.| ...+.++..+.. .+++..|++..+ ....+..+--+++|+..+-.
T Consensus 394 l~aei~a~t~~~~~~~y~~~~r~~~~~~Yervda~aa--------~~~~a~L~~ls~-~~v~~t~l~g~~~~a~~~~~-- 462 (524)
T COG0033 394 LAAEITAVTGKIPQEHYAELGRNFGRPDYERVDAEAA--------NAQKARLRKLSP-EMVSATTLAGDPITAYLTPA-- 462 (524)
T ss_pred HhhhchhhhccCHHHHHHHHHHHhCcccHHHhcCchh--------HHHHHHHHhhCc-ccCCccccCCCcchhcccCC--
Confidence 1 1235777788888877655 334556666532 134455555443 22333322224555443322
Q ss_pred CCCCCCcccccCceEEEEeecccCCceEEEEecCCCCccEEEEEEe-CChhHHHHHHHHHh
Q 022948 228 DSNESPAAIDARMYRAKVTDEEHGQYGWIHLRQSIHNPNIAVNVQS-MVPGGCRSITKSLR 287 (289)
Q Consensus 228 ~~~~~~~~~~~DGiki~~~~~~~~~~~w~liRpSgTEP~iriy~Ea-~~~~~~~~l~~~~~ 287 (289)
+.+.+.+.|+|+.| ++||+..||||||..+|||+|+ +..+..+++..+++
T Consensus 463 ----~Gn~s~~~GLkV~~------~ng~fa~R~SGT~~t~kiY~Esf~~~~h~~~~q~~~~ 513 (524)
T COG0033 463 ----PGNGAAIGGLKVTT------ENGWFAARPSGTEATYKIYAESFEGDEHLKQIQKEAA 513 (524)
T ss_pred ----CCchhhcCceEEEe------eCcEEEEecCCcchhhhhhhhhhCChHHHHHHHHHHH
Confidence 34667899999999 7789999999999999999999 44555555555543
No 38
>KOG0625 consensus Phosphoglucomutase [Carbohydrate transport and metabolism]
Probab=99.94 E-value=7.6e-26 Score=208.04 Aligned_cols=251 Identities=15% Similarity=0.135 Sum_probs=199.3
Q ss_pred CCCCCCCCCCChHHHHHHHHHHHhcCCcEEEEecCCCCeEEEEcCCCcccChhHHHHHHHHHHHhh-----CCCCeEEEc
Q 022948 1 MFPNHIPNPEDKTAMALTRAAVLENNADLGVVFDTDVDRSGVVDNKGNPINGDKLIALMSAIVLKE-----HPGTTIVTD 75 (289)
Q Consensus 1 ~Fp~~~P~P~~~~~l~~l~~~v~~~~adlGia~D~DgDR~~vvd~~G~~l~~d~~~~Ll~~~~l~~-----~~~~~vv~t 75 (289)
+|++.||+|. .+.-..|.+.|...+.|||.|+||||||=.+...+|.++++..-.+++|.++-.- ..-..+..+
T Consensus 252 DFGG~HPDPN-LTYAk~LV~rv~~~~~~fGAA~DGDGDRNMIlG~~~fFVtPsDSvAiIA~na~~IPYF~~~Gv~GfARS 330 (558)
T KOG0625|consen 252 DFGGGHPDPN-LTYAKDLVDRVDRGEIDFGAAFDGDGDRNMILGKNGFFVTPSDSVAIIAANAEAIPYFRKQGVKGFARS 330 (558)
T ss_pred ccCCCCCCCc-hhhHHHHHHHhccCCCcccccccCCCcceeeeccCceeeccchhHHHHHhcchhcchhhhcCcchhhhc
Confidence 5899999998 6777888888999999999999999999999999999999999999999986542 112358889
Q ss_pred ccCCHHHHHHHHHcCCcEEEeecccHHHHHHHhhcccCCceeeEEeecccceecCCCccCCCHHHHHHHHHHHHHHHHhc
Q 022948 76 ARTSMALTKFITDRGGNHCLYRVGYRNVIDKGVHLNEDGIETHLMMETSGHGALKENYFLDDGAYMVVKIIIQMVRMKLE 155 (289)
Q Consensus 76 ~~ss~~l~~~a~~~g~~v~~t~vG~k~i~~~~~~~~~~g~~~~~g~E~sg~~~~~~~~~~~Dgi~a~l~ll~e~~~~~~~ 155 (289)
..+|.+++++|+++|.+++++|||.|++.+.|.... +.++||||-| .-.++.+.+||++|.+.+| .+++.
T Consensus 331 mPTs~AlDrVak~~gl~~yEvPTGWKfF~nLmDAgk-----lsiCGEESFG-TGSdHIREKDGiWAvlaWl-sIlA~--- 400 (558)
T KOG0625|consen 331 MPTSGALDRVAKKLGLPVYEVPTGWKFFGNLMDAGK-----LSICGEESFG-TGSDHIREKDGIWAVLAWL-SILAH--- 400 (558)
T ss_pred CCchhHHHHHHHHcCCceEEcCchHHHHHhhhcccc-----eeeccccccc-CCccccccccchhhHHHHH-HHHHh---
Confidence 999999999999999999999999999999986654 6799999955 3467889999999999877 78887
Q ss_pred CCCCC-HHHHHHHchhhh-ccceeEEEeccChhhHhhhHHHHHHHHHhhhhh-----cccCC---ccccccCcccccccc
Q 022948 156 GSDEG-IGSLIKDLEEPL-ESIELRMNIISEPRYAKAKGSEAIEEFRKYIEE-----GRLQG---WELDSCGDCWVSEGC 225 (289)
Q Consensus 156 ~~~~~-l~~ll~~lp~~~-~~~~~~i~~~~~~~~~~~~~~~~m~~l~~~~~~-----~~~~~---~~v~~~~~~~~~~~~ 225 (289)
++++ +.+++.+++..| .....|-+++. |..+. ..++|+.|++.... ...++ ++|..+++|.+.+-.
T Consensus 401 -~k~~~vedI~~~~W~~YGR~fftRYDYE~-~e~e~--ank~m~~l~a~~~~~~vg~~~~~~~~~y~V~~ad~F~Y~DPv 476 (558)
T KOG0625|consen 401 -NKQNVVEDIVKEHWAKYGRNFFTRYDYEE-VEAEG--ANKMMEDLEALVSDSFVGKSFSPGDEVYKVAKADDFEYTDPV 476 (558)
T ss_pred -cccccHHHHHHHHHHHhCccceeecchhh-cChHh--HHHHHHHHHHHhccccccccccCCCceEEEEecCCceecCCC
Confidence 4443 999999998877 34455655553 21121 34789888876542 12233 567777777664433
Q ss_pred ccCCCCCCcccccCceEEEEeecccCCceEEEEecCCCCc---cEEEEEEeCChh
Q 022948 226 LVDSNESPAAIDARMYRAKVTDEEHGQYGWIHLRQSIHNP---NIAVNVQSMVPG 277 (289)
Q Consensus 226 ~~~~~~~~~~~~~DGiki~~~~~~~~~~~w~liRpSgTEP---~iriy~Ea~~~~ 277 (289)
+..+++-+|+|+.| ++++++.+|-|||-. .+|+|+|+-..+
T Consensus 477 ------DGSvs~~QGlri~F-----~dGsR~VfRLSGTGSsGATiRLYie~ye~d 520 (558)
T KOG0625|consen 477 ------DGSVSKKQGLRIVF-----EDGSRIVFRLSGTGSSGATIRLYIESYEKD 520 (558)
T ss_pred ------CCcccccCceEEEE-----cCCcEEEEEeccCCCCCceEEEehhhhccc
Confidence 35678889999999 677899999999976 899999995443
No 39
>PF02880 PGM_PMM_III: Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III; InterPro: IPR005846 The alpha-D-phosphohexomutase superfamily is composed of four related enzymes, each of which catalyses a phosphoryl transfer on their sugar substrates: phosphoglucomutase (PGM), phosphoglucomutase/phosphomannomutase (PGM/PMM), phosphoglucosamine mutase (PNGM), and phosphoacetylglucosamine mutase (PAGM) []. PGM (5.4.2.2 from EC) converts D-glucose 1-phosphate into D-glucose 6-phosphate, and participates in both the breakdown and synthesis of glucose []. PGM/PMM (5.4.2.2 from EC; 5.4.2.8 from EC) are primarily bacterial enzymes that use either glucose or mannose as substrate, participating in the biosynthesis of a variety of carbohydrates such as lipopolysaccharides and alginate [, ]. Both PNGM (5.4.2.3 from EC) and PAGM (5.4.2.10 from EC) are involved in the biosynthesis of UDP-N-acetylglucosamine [, ]. Despite differences in substrate specificity, these enzymes share a similar catalytic mechanism, converting 1-phospho-sugars to 6-phospho-sugars via a biphosphorylated 1,6-phospho-sugar. The active enzyme is phosphorylated at a conserved serine residue and binds one magnesium ion; residues around the active site serine are well conserved among family members. The reaction mechanism involves phosphoryl transfer from the phosphoserine to the substrate to create a biophosphorylated sugar, followed by a phosphoryl transfer from the substrate back to the enzyme []. The structures of PGM and PGM/PMM have been determined, and were found to be very similar in topology. These enzymes are both composed of four domains and a large central active site cleft, where each domain contains residues essential for catalysis and/or substrate recognition. Domain I contains the catalytic phosphoserine, domain II contains a metal-binding loop to coordinate the magnesium ion, domain III contains the sugar-binding loop that recognises the two different binding orientations of the 1- and 6-phospho-sugars, and domain IV contains a phosphate-binding site required for orienting the incoming phospho-sugar substrate. This entry represents domain III found in alpha-D-phosphohexomutase enzymes. This domain has a 3-layer alpha/beta/alpha topology.; GO: 0016868 intramolecular transferase activity, phosphotransferases, 0005975 carbohydrate metabolic process; PDB: 1C47_A 1VKL_B 1LXT_A 1JDY_B 3PMG_A 1C4G_B 3UW2_A 2F7L_B 3I3W_B 2Z0F_A ....
Probab=99.94 E-value=2.1e-26 Score=182.62 Aligned_cols=112 Identities=28% Similarity=0.456 Sum_probs=100.5
Q ss_pred ChhHHHHHHHHHHHhhCC-CCeEEEcccCCHHHHHHHHHcCCcEEEeecccHHHHHHHhhcccCCceeeEEeecccceec
Q 022948 51 NGDKLIALMSAIVLKEHP-GTTIVTDARTSMALTKFITDRGGNHCLYRVGYRNVIDKGVHLNEDGIETHLMMETSGHGAL 129 (289)
Q Consensus 51 ~~d~~~~Ll~~~~l~~~~-~~~vv~t~~ss~~l~~~a~~~g~~v~~t~vG~k~i~~~~~~~~~~g~~~~~g~E~sg~~~~ 129 (289)
+||++++|+++++++.++ +..||.|++||++++++++++|+++++|+|||+||.++|.+.+ ++||||+|||++|
T Consensus 1 ~gd~~~al~a~~~l~~~~~~~~vv~~v~sS~~~~~~~~~~g~~~~~t~vG~~~i~~~~~~~~-----~~~ggE~sgg~~~ 75 (113)
T PF02880_consen 1 NGDELLALLADYLLEEHKPGGTVVVTVVSSRALDKIAEKHGGKVIRTKVGFKNIAEKMREEN-----AVFGGEESGGFIF 75 (113)
T ss_dssp HHHHHHHHHHHHHHHCHTTTEEEEEETTS-THHHHHHHHTTSEEEEESSSHHHHHHHHHHTT-----ESEEEETTSEEEE
T ss_pred CcHHHHHHHHHHHHHhCCCCCEEEEeCHHHHHHHHHHHHCCCEEEEecCCcHHHHHHHhhhc-----eeEEecccCeEEe
Confidence 589999999999998644 3369999999999999999999999999999999999999987 5899999999999
Q ss_pred CCCccCCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHchhhh
Q 022948 130 KENYFLDDGAYMVVKIIIQMVRMKLEGSDEGIGSLIKDLEEPL 172 (289)
Q Consensus 130 ~~~~~~~Dgi~a~l~ll~e~~~~~~~~~~~~l~~ll~~lp~~~ 172 (289)
+++++++|||+++++++ +|++. +|+||+++++++|++|
T Consensus 76 ~~~~~~~Dgi~a~~~~l-~~l~~----~~~~ls~ll~~l~~~Y 113 (113)
T PF02880_consen 76 PDFSYDKDGIYAALLLL-ELLAE----EGKTLSELLDELPKKY 113 (113)
T ss_dssp TTTESSE-HHHHHHHHH-HHHHH----HTS-HHHHHHHHHHHH
T ss_pred cCCCCCCcHHHHHHHHH-HHHHH----hCCCHHHHHHHHhccC
Confidence 99999999999999876 99998 8999999999999765
No 40
>KOG2537 consensus Phosphoglucomutase/phosphomannomutase [Carbohydrate transport and metabolism]
Probab=99.68 E-value=3.8e-16 Score=147.65 Aligned_cols=203 Identities=15% Similarity=0.197 Sum_probs=144.3
Q ss_pred EEEEecCCCCeEEEE--cCCC--cccChhHHHHHHHHHHHhhC------CCCeEEEcccCCHHHHHHHHH-cCCcEEEee
Q 022948 29 LGVVFDTDVDRSGVV--DNKG--NPINGDKLIALMSAIVLKEH------PGTTIVTDARTSMALTKFITD-RGGNHCLYR 97 (289)
Q Consensus 29 lGia~D~DgDR~~vv--d~~G--~~l~~d~~~~Ll~~~~l~~~------~~~~vv~t~~ss~~l~~~a~~-~g~~v~~t~ 97 (289)
....||||+||+..+ ++++ ++++||.+..+++.++.... -...||.|..|+.+-.++.+. +++.++.++
T Consensus 279 ~caSfDGDADRlvyf~~~~~~~f~llDGDkistlla~~l~~ll~~~~~~l~~GvVqtaYaNgast~yl~~~l~~~vv~v~ 358 (539)
T KOG2537|consen 279 RCASFDGDADRLVYFYIDDDSEFHLLDGDKIATLIAGYLRELLKQIELSLRLGVVQTAYANGASTDYLKETLKFPVVCVP 358 (539)
T ss_pred ceeeeecccceeEEEEecCCceeEeecchHHHHHHHHHHHHHHHHhhccceeeeEEEEeecCccHhhhhhhcCCceEEec
Confidence 467899999999887 5555 89999999999999975521 124699999999998888888 999999999
Q ss_pred cccHHHHHHHhhcccCCceeeEEeecccce--ecCCC-------------------------------ccCCCHHHHHHH
Q 022948 98 VGYRNVIDKGVHLNEDGIETHLMMETSGHG--ALKEN-------------------------------YFLDDGAYMVVK 144 (289)
Q Consensus 98 vG~k~i~~~~~~~~~~g~~~~~g~E~sg~~--~~~~~-------------------------------~~~~Dgi~a~l~ 144 (289)
+|.|++..++.+.+ +-..+|.+||. .|++. +..+||+.-.+.
T Consensus 359 tGvKhlh~~A~efD-----iGiyFEaNGHGti~FS~~~~~~i~~~~~~~~~~~~~a~~~L~~~~~Linq~vGDAisd~ll 433 (539)
T KOG2537|consen 359 TGVKHLHHAAAEFD-----IGIYFEANGHGTILFSEAFLATIKDLAETKEPGESKALKTLKLLSDLINQTVGDAISDMLA 433 (539)
T ss_pred cccchHHHHHHhhc-----ceeEEeccCccceeehHHHHHhhhhhhhCCCccchHHHHHHHHHHhhhcccchhhhcchHH
Confidence 99999999998765 44677888876 34331 235677755443
Q ss_pred HHHHHHHHHhcCCCCCHHHHHHHchhhhccceeEEEeccChhhHhhhHHHHHHHHHhhhhhcccCCccccccCccccccc
Q 022948 145 IIIQMVRMKLEGSDEGIGSLIKDLEEPLESIELRMNIISEPRYAKAKGSEAIEEFRKYIEEGRLQGWELDSCGDCWVSEG 224 (289)
Q Consensus 145 ll~e~~~~~~~~~~~~l~~ll~~lp~~~~~~~~~i~~~~~~~~~~~~~~~~m~~l~~~~~~~~~~~~~v~~~~~~~~~~~ 224 (289)
+. ..+++ .+.+..+|.+ ++...|..+.++.+.+. .+...--+
T Consensus 434 v~-~il~~----~~~s~~~w~e-~y~dlPnrq~Kv~v~Dr---------~i~~ttda----------------------- 475 (539)
T KOG2537|consen 434 VE-AILAH----KGWSVQDWDE-LYRDLPNRQLKVKVPDR---------SIIKTTDA----------------------- 475 (539)
T ss_pred HH-HHHHh----cCCCHHHHHH-HhcCCccceEEEEeccc---------eeeechhh-----------------------
Confidence 33 45555 6788888866 44455666777776631 01110000
Q ss_pred cccCCCCCCcccccCceE-------EEEeecccCCceEEEEecCCCCccEEEEEEeCChhHHHHHHHHHh
Q 022948 225 CLVDSNESPAAIDARMYR-------AKVTDEEHGQYGWIHLRQSIHNPNIAVNVQSMVPGGCRSITKSLR 287 (289)
Q Consensus 225 ~~~~~~~~~~~~~~DGik-------i~~~~~~~~~~~w~liRpSgTEP~iriy~Ea~~~~~~~~l~~~~~ 287 (289)
.+.+.+-+|++ -.+ ..|+.++||||||.++|||+|+.+++.+..+..++.
T Consensus 476 -------er~~v~P~glQ~~Ida~vaky------~~gRaFvR~SGTEdvVRVYAEa~t~~~~d~l~~~v~ 532 (539)
T KOG2537|consen 476 -------ERQLVKPVGLQDKIDALVAKY------KRGRSFVRPSGTEDVVRVYAEASTKEDADQLALEVA 532 (539)
T ss_pred -------hhhcCCcHHHHHHHHHHHhhc------cCCceEEeccCccceEEEEEecCchhhHHHHHHHHH
Confidence 01111222222 223 568999999999999999999999999999988764
No 41
>PF00408 PGM_PMM_IV: Phosphoglucomutase/phosphomannomutase, C-terminal domain; InterPro: IPR005843 The alpha-D-phosphohexomutase superfamily is composed of four related enzymes, each of which catalyses a phosphoryl transfer on their sugar substrates: phosphoglucomutase (PGM), phosphoglucomutase/phosphomannomutase (PGM/PMM), phosphoglucosamine mutase (PNGM), and phosphoacetylglucosamine mutase (PAGM) []. PGM (5.4.2.2 from EC) converts D-glucose 1-phosphate into D-glucose 6-phosphate, and participates in both the breakdown and synthesis of glucose []. PGM/PMM (5.4.2.2 from EC; 5.4.2.8 from EC) are primarily bacterial enzymes that use either glucose or mannose as substrate, participating in the biosynthesis of a variety of carbohydrates such as lipopolysaccharides and alginate [, ]. Both PNGM (5.4.2.3 from EC) and PAGM (5.4.2.10 from EC) are involved in the biosynthesis of UDP-N-acetylglucosamine [, ]. Despite differences in substrate specificity, these enzymes share a similar catalytic mechanism, converting 1-phospho-sugars to 6-phospho-sugars via a biphosphorylated 1,6-phospho-sugar. The active enzyme is phosphorylated at a conserved serine residue and binds one magnesium ion; residues around the active site serine are well conserved among family members. The reaction mechanism involves phosphoryl transfer from the phosphoserine to the substrate to create a biophosphorylated sugar, followed by a phosphoryl transfer from the substrate back to the enzyme []. The structures of PGM and PGM/PMM have been determined, and were found to be very similar in topology. These enzymes are both composed of four domains and a large central active site cleft, where each domain contains residues essential for catalysis and/or substrate recognition. Domain I contains the catalytic phosphoserine, domain II contains a metal-binding loop to coordinate the magnesium ion, domain III contains the sugar-binding loop that recognises the two different binding orientations of the 1- and 6-phospho-sugars, and domain IV contains a phosphate-binding site required for orienting the incoming phospho-sugar substrate. This entry represents the C-terminal domain alpha-D-phosphohexomutase enzymes.; GO: 0016868 intramolecular transferase activity, phosphotransferases, 0005975 carbohydrate metabolic process; PDB: 1KFQ_B 1KFI_A 3PDK_B 2F7L_A 1TUO_A 2FKM_X 3C04_A 1K2Y_X 1P5G_X 2H4L_X ....
Probab=99.42 E-value=2.2e-13 Score=99.48 Aligned_cols=46 Identities=20% Similarity=0.271 Sum_probs=41.1
Q ss_pred ccCceEEEEeecccCCceEEE-EecCCCCccEEEEEEeCChhHHHHHHHHHhc
Q 022948 237 DARMYRAKVTDEEHGQYGWIH-LRQSIHNPNIAVNVQSMVPGGCRSITKSLRD 288 (289)
Q Consensus 237 ~~DGiki~~~~~~~~~~~w~l-iRpSgTEP~iriy~Ea~~~~~~~~l~~~~~~ 288 (289)
..||+++.+ ++||.+ ||||||||++|||+||.+.+.++++++.+.+
T Consensus 24 ~~~~~~~~~------~dG~~l~vR~SgTEP~iRv~~Ea~~~~~~~~~~~~i~~ 70 (73)
T PF00408_consen 24 TIDGIKILF------EDGWRLLVRPSGTEPKIRVYVEAPDEEELEEIAEEIAE 70 (73)
T ss_dssp HHHCEEEEE------TTEEEEEEEEESSSSEEEEEEEESSHHHHHHHHHHHHH
T ss_pred ccceEEEEC------CCceEEEEECCCCCceEEEEEEeCCHHHHHHHHHHHHH
Confidence 679999999 666666 9999999999999999999999999988764
No 42
>PF02879 PGM_PMM_II: Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II; InterPro: IPR005845 The alpha-D-phosphohexomutase superfamily is composed of four related enzymes, each of which catalyses a phosphoryl transfer on their sugar substrates: phosphoglucomutase (PGM), phosphoglucomutase/phosphomannomutase (PGM/PMM), phosphoglucosamine mutase (PNGM), and phosphoacetylglucosamine mutase (PAGM) []. PGM (5.4.2.2 from EC) converts D-glucose 1-phosphate into D-glucose 6-phosphate, and participates in both the breakdown and synthesis of glucose []. PGM/PMM (5.4.2.2 from EC; 5.4.2.8 from EC) are primarily bacterial enzymes that use either glucose or mannose as substrate, participating in the biosynthesis of a variety of carbohydrates such as lipopolysaccharides and alginate [, ]. Both PNGM (5.4.2.3 from EC) and PAGM (5.4.2.10 from EC) are involved in the biosynthesis of UDP-N-acetylglucosamine [, ]. Despite differences in substrate specificity, these enzymes share a similar catalytic mechanism, converting 1-phospho-sugars to 6-phospho-sugars via a biphosphorylated 1,6-phospho-sugar. The active enzyme is phosphorylated at a conserved serine residue and binds one magnesium ion; residues around the active site serine are well conserved among family members. The reaction mechanism involves phosphoryl transfer from the phosphoserine to the substrate to create a biophosphorylated sugar, followed by a phosphoryl transfer from the substrate back to the enzyme []. The structures of PGM and PGM/PMM have been determined, and were found to be very similar in topology. These enzymes are both composed of four domains and a large central active site cleft, where each domain contains residues essential for catalysis and/or substrate recognition. Domain I contains the catalytic phosphoserine, domain II contains a metal-binding loop to coordinate the magnesium ion, domain III contains the sugar-binding loop that recognises the two different binding orientations of the 1- and 6-phospho-sugars, and domain IV contains a phosphate-binding site required for orienting the incoming phospho-sugar substrate. This entry represents domain II found in alpha-D-phosphohexomutase enzymes. This domain has a 3-layer alpha/beta/alpha topology.; GO: 0016868 intramolecular transferase activity, phosphotransferases, 0005975 carbohydrate metabolic process; PDB: 2F7L_A 3PDK_B 1KFQ_B 1KFI_A 1C47_A 1VKL_B 1LXT_A 1JDY_B 3PMG_A 1C4G_B ....
Probab=99.12 E-value=8.5e-11 Score=91.43 Aligned_cols=46 Identities=52% Similarity=0.858 Sum_probs=42.5
Q ss_pred CCCC-CCCCCCChHHHHHHHHHHHhcCCcEEEEecCCCCeEEEEcCCC
Q 022948 1 MFPN-HIPNPEDKTAMALTRAAVLENNADLGVVFDTDVDRSGVVDNKG 47 (289)
Q Consensus 1 ~Fp~-~~P~P~~~~~l~~l~~~v~~~~adlGia~D~DgDR~~vvd~~G 47 (289)
+||+ +.|||+. +++..+.+.+++.++|+|+++||||||++++|++|
T Consensus 58 ~f~~~~~p~p~~-~~l~~~~~~v~~~~ad~g~~~DgDaDRl~~vd~~G 104 (104)
T PF02879_consen 58 DFPNQHAPNPEE-ESLQRLIKIVRESGADLGIAFDGDADRLGVVDENG 104 (104)
T ss_dssp TGTTTSTSSTST-TTTHHHHHHHHHSTTSEEEEE-TTSSBEEEEETTS
T ss_pred cccccccccccc-chhHHHHHHhhccCceEEEEECCcCceeEEECCCC
Confidence 5888 8999985 89999999999999999999999999999999987
No 43
>COG1979 Uncharacterized oxidoreductases, Fe-dependent alcohol dehydrogenase family [Energy production and conversion]
Probab=61.52 E-value=11 Score=35.27 Aligned_cols=34 Identities=21% Similarity=0.231 Sum_probs=29.4
Q ss_pred CCCCCCCCCCChHHHHHHHHHHHhcCCcEEEEecC
Q 022948 1 MFPNHIPNPEDKTAMALTRAAVLENNADLGVVFDT 35 (289)
Q Consensus 1 ~Fp~~~P~P~~~~~l~~l~~~v~~~~adlGia~D~ 35 (289)
.|.|+-|||. -+.+..-.+++++++.||.++.-|
T Consensus 61 E~~GVEPNP~-~~Tv~kaV~i~kee~idflLAVGG 94 (384)
T COG1979 61 EFGGVEPNPR-LETLMKAVEICKEENIDFLLAVGG 94 (384)
T ss_pred EecCCCCCch-HHHHHHHHHHHHHcCceEEEEecC
Confidence 3889999998 677888899999999999988754
No 44
>TIGR01123 ilvE_II branched-chain amino acid aminotransferase, group II. Among the class IV aminotransferases are two phylogenetically separable groups of branched-chain amino acid aminotransferase (IlvE). The last common ancestor of the two lineages appears also to have given rise to a family of D-amino acid aminotransferases (DAAT). This model represents the IlvE family less similar to the DAAT family.
Probab=56.06 E-value=46 Score=30.60 Aligned_cols=73 Identities=16% Similarity=0.119 Sum_probs=49.4
Q ss_pred HHHHHhcCCcEEEEecCCCC---------eEEEEcCCCcccChhHHHHHHHHHHHhhCCCCeEEEcccCCHHHHHHHHHc
Q 022948 19 RAAVLENNADLGVVFDTDVD---------RSGVVDNKGNPINGDKLIALMSAIVLKEHPGTTIVTDARTSMALTKFITDR 89 (289)
Q Consensus 19 ~~~v~~~~adlGia~D~DgD---------R~~vvd~~G~~l~~d~~~~Ll~~~~l~~~~~~~vv~t~~ss~~l~~~a~~~ 89 (289)
.+.+++.++|=++.+|+||+ .++++.++|.++++.- ...++--+ +-..+-+.+++.
T Consensus 167 ~~eA~~~g~deal~ld~~g~g~v~E~~~sNlf~v~~~g~l~Tp~l--------------~~~~L~GI-tR~~vi~l~~~~ 231 (313)
T TIGR01123 167 QAKAAEQGCDQVVYLDPVEHTYIEEVGAMNFFFITGDGELVTPPL--------------SGSILPGI-TRDSLLQLAKDL 231 (313)
T ss_pred HHHHHHCCCCEEEEEeCCCCeEEEEcCcEeEEEEEcCCEEEeCCC--------------CCCCCcch-HHHHHHHHHHHc
Confidence 56677889999999999998 5566655556555531 01122112 234455788999
Q ss_pred CCcEEEeecccHHHHHH
Q 022948 90 GGNHCLYRVGYRNVIDK 106 (289)
Q Consensus 90 g~~v~~t~vG~k~i~~~ 106 (289)
|.++.+.++....+.+.
T Consensus 232 Gi~v~e~~i~~~~l~~A 248 (313)
T TIGR01123 232 GMEVEERRIDIDELKAF 248 (313)
T ss_pred CCeEEEEecCHHHHHHH
Confidence 99999999988876654
No 45
>COG0124 HisS Histidyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=52.80 E-value=3.9 Score=39.74 Aligned_cols=33 Identities=18% Similarity=0.187 Sum_probs=24.5
Q ss_pred ccCceEEEEeecccCCceEEEEecCCCCccEEEEEEeC
Q 022948 237 DARMYRAKVTDEEHGQYGWIHLRQSIHNPNIAVNVQSM 274 (289)
Q Consensus 237 ~~DGiki~~~~~~~~~~~w~liRpSgTEP~iriy~Ea~ 274 (289)
.-.+..|.- ..+-|+.+||.+|-|++|.|+|-.
T Consensus 63 ~kemY~F~D-----kggr~laLRpe~Tapv~R~~~en~ 95 (429)
T COG0124 63 EKEMYTFKD-----KGGRSLALRPELTAPVARAVAENK 95 (429)
T ss_pred ccceEEEEe-----CCCCEEEecccCcHHHHHHHHhcc
Confidence 344555543 245699999999999999998864
No 46
>PRK08868 flagellar protein FlaG; Provisional
Probab=48.01 E-value=81 Score=25.96 Aligned_cols=51 Identities=16% Similarity=0.283 Sum_probs=40.8
Q ss_pred hHHHHHHHHHHHhcCCcEEEEecCCCCeEEE--Ec-CCC---cccChhHHHHHHHHH
Q 022948 12 KTAMALTRAAVLENNADLGVVFDTDVDRSGV--VD-NKG---NPINGDKLIALMSAI 62 (289)
Q Consensus 12 ~~~l~~l~~~v~~~~adlGia~D~DgDR~~v--vd-~~G---~~l~~d~~~~Ll~~~ 62 (289)
..+++.+-+.+...+.++-|.+|.|.+|+++ +| +.| +.|.+++++.|..+.
T Consensus 74 ~~aVeklNe~~~~~n~~L~F~vdeetgr~VVkViD~~T~EVIRQIP~Ee~L~la~~l 130 (144)
T PRK08868 74 EKMVEQMNEFVKSINKGLSFRVDEESGRDVVTIYEASTGDIIRQIPDEEMLEVLRRL 130 (144)
T ss_pred HHHHHHHHHHHHhhcCceEEEEecCCCCEEEEEEECCCCceeeeCCCHHHHHHHHHH
Confidence 3567777788888999999999999999776 45 455 478899999988665
No 47
>PF11576 DUF3236: Protein of unknown function (DUF3236); InterPro: IPR012019 This family of proteins with unknown function appears to be restricted to Methanobacteria. ; PDB: 3BRC_B.
Probab=47.70 E-value=20 Score=29.39 Aligned_cols=51 Identities=20% Similarity=0.215 Sum_probs=33.0
Q ss_pred CCCCCCCCCChHHHHHHHHHHHhcCCcEEEE-----ecCCCCeEEEEcCCCcccCh
Q 022948 2 FPNHIPNPEDKTAMALTRAAVLENNADLGVV-----FDTDVDRSGVVDNKGNPING 52 (289)
Q Consensus 2 Fp~~~P~P~~~~~l~~l~~~v~~~~adlGia-----~D~DgDR~~vvd~~G~~l~~ 52 (289)
+|+..++=++-.++..-.-.+-..+||+.|+ .=|.|.=+.+.|++|+++++
T Consensus 68 i~Tn~aDlTrmPA~~K~LmavD~~dADlvIARGRLGvPGSGSmlvimD~kGRiLta 123 (154)
T PF11576_consen 68 IPTNSADLTRMPALSKALMAVDISDADLVIARGRLGVPGSGSMLVIMDSKGRILTA 123 (154)
T ss_dssp S--GGGGGSSSHHHHHHHHHHHHH--SEEEEEEE-SSTTS-EEEEEEETTS-EEEE
T ss_pred ccCcchhcccCcHHHhHHHheeccCCcEEEEcccccCCCCccEEEEEcCCCcEEee
Confidence 5666555555455666566677799999987 45788878888999998876
No 48
>PRK07738 flagellar protein FlaG; Provisional
Probab=39.62 E-value=1.4e+02 Score=23.58 Aligned_cols=51 Identities=16% Similarity=0.219 Sum_probs=40.0
Q ss_pred hHHHHHHHHHHHhcCCcEEEEecCCCCeEEE--EcC-CC---cccChhHHHHHHHHH
Q 022948 12 KTAMALTRAAVLENNADLGVVFDTDVDRSGV--VDN-KG---NPINGDKLIALMSAI 62 (289)
Q Consensus 12 ~~~l~~l~~~v~~~~adlGia~D~DgDR~~v--vd~-~G---~~l~~d~~~~Ll~~~ 62 (289)
...++.+-+.+...+-++-|.+|.+.+|+.+ +|. .| +.|.+++++-++...
T Consensus 49 ~~aveklN~~l~~~~~~L~F~vdeet~~~vVkVvD~~T~EVIRQIPpEe~L~l~~~m 105 (117)
T PRK07738 49 EEVVDGMNELLEPSQTSLKFELHEKLNEYYVQVVDERTNEVIREIPPKKLLDMYAAM 105 (117)
T ss_pred HHHHHHHHHHHHhcCCceEEEEecCCCcEEEEEEECCCCeeeeeCCCHHHHHHHHHH
Confidence 3456667777788899999999999999776 564 45 477889999887765
No 49
>smart00135 LY Low-density lipoprotein-receptor YWTD domain. Type "B" repeats in low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. Also present in a variety of molecules similar to gp300/megalin.
Probab=34.69 E-value=38 Score=20.34 Aligned_cols=18 Identities=22% Similarity=-0.049 Sum_probs=15.3
Q ss_pred EEEEecCCCCeEEEEcCC
Q 022948 29 LGVVFDTDVDRSGVVDNK 46 (289)
Q Consensus 29 lGia~D~DgDR~~vvd~~ 46 (289)
-|+++|++++|+...|-.
T Consensus 12 ~~la~d~~~~~lYw~D~~ 29 (43)
T smart00135 12 NGLAVDWIEGRLYWTDWG 29 (43)
T ss_pred CEEEEeecCCEEEEEeCC
Confidence 479999999999988754
No 50
>PRK00103 rRNA large subunit methyltransferase; Provisional
Probab=33.70 E-value=93 Score=25.89 Aligned_cols=28 Identities=11% Similarity=0.220 Sum_probs=24.3
Q ss_pred CCCeEEEEcCCCcccChhHHHHHHHHHH
Q 022948 36 DVDRSGVVDNKGNPINGDKLIALMSAIV 63 (289)
Q Consensus 36 DgDR~~vvd~~G~~l~~d~~~~Ll~~~~ 63 (289)
++|.+++.|++|+.++-.++...+..+.
T Consensus 66 ~~~~~i~LDe~Gk~~sS~~fA~~l~~~~ 93 (157)
T PRK00103 66 KGARVIALDERGKQLSSEEFAQELERWR 93 (157)
T ss_pred CCCEEEEEcCCCCcCCHHHHHHHHHHHH
Confidence 4678899999999999999999888773
No 51
>PF09413 DUF2007: Domain of unknown function (DUF2007); InterPro: IPR018551 This is a family of proteins with unknown function. ; PDB: 2HFV_A.
Probab=33.39 E-value=52 Score=22.63 Aligned_cols=28 Identities=14% Similarity=0.096 Sum_probs=22.0
Q ss_pred CCCCccEEEEEEeCChhHHHHHHHHHhc
Q 022948 261 SIHNPNIAVNVQSMVPGGCRSITKSLRD 288 (289)
Q Consensus 261 SgTEP~iriy~Ea~~~~~~~~l~~~~~~ 288 (289)
.|+...++||+...+.++|+++++.+.+
T Consensus 40 ~g~~~~~~v~V~~~d~~~A~~il~~~~~ 67 (67)
T PF09413_consen 40 PGTGGQVEVYVPEEDYERAREILEEFEN 67 (67)
T ss_dssp S--SSSEEEEEEGGGHHHHHHHHHHTT-
T ss_pred cCccCceEEEECHHHHHHHHHHHHHhcC
Confidence 4555559999999999999999998764
No 52
>COG1778 Low specificity phosphatase (HAD superfamily) [General function prediction only]
Probab=33.26 E-value=1.6e+02 Score=24.76 Aligned_cols=66 Identities=20% Similarity=0.218 Sum_probs=42.1
Q ss_pred EEecCCC---CeEEEEcCCCc------ccChhHHHHHHHHHHHhhCCCCeEEEcccCCHHHHHHHHHcCCcEEEeecccH
Q 022948 31 VVFDTDV---DRSGVVDNKGN------PINGDKLIALMSAIVLKEHPGTTIVTDARTSMALTKFITDRGGNHCLYRVGYR 101 (289)
Q Consensus 31 ia~D~Dg---DR~~vvd~~G~------~l~~d~~~~Ll~~~~l~~~~~~~vv~t~~ss~~l~~~a~~~g~~v~~t~vG~k 101 (289)
+++|-|| |=-..+|++|+ +.+|.=+- . +.+.....-+.|-..|.++++-++.+|++.+..-+-.|
T Consensus 11 li~DVDGvLTDG~ly~~~~Gee~KaFnv~DG~Gik-----~-l~~~Gi~vAIITGr~s~ive~Ra~~LGI~~~~qG~~dK 84 (170)
T COG1778 11 LILDVDGVLTDGKLYYDENGEEIKAFNVRDGHGIK-----L-LLKSGIKVAIITGRDSPIVEKRAKDLGIKHLYQGISDK 84 (170)
T ss_pred EEEeccceeecCeEEEcCCCceeeeeeccCcHHHH-----H-HHHcCCeEEEEeCCCCHHHHHHHHHcCCceeeechHhH
Confidence 5566665 33455677775 44443222 2 22223334566788899999999999999888766665
Q ss_pred H
Q 022948 102 N 102 (289)
Q Consensus 102 ~ 102 (289)
.
T Consensus 85 ~ 85 (170)
T COG1778 85 L 85 (170)
T ss_pred H
Confidence 3
No 53
>PRK09860 putative alcohol dehydrogenase; Provisional
Probab=33.07 E-value=65 Score=30.70 Aligned_cols=46 Identities=30% Similarity=0.411 Sum_probs=34.9
Q ss_pred CCCCCCCCCChHHHHHHHHHHHhcCCcEEEEecCCCCeEEEEcCCCcccChhHHHHHH
Q 022948 2 FPNHIPNPEDKTAMALTRAAVLENNADLGVVFDTDVDRSGVVDNKGNPINGDKLIALM 59 (289)
Q Consensus 2 Fp~~~P~P~~~~~l~~l~~~v~~~~adlGia~D~DgDR~~vvd~~G~~l~~d~~~~Ll 59 (289)
|-++.|||. -+..+...+.+++.++|+.|++=| |..++--+..+++
T Consensus 65 f~~v~~np~-~~~v~~~~~~~~~~~~D~IiaiGG-----------GS~iD~AK~ia~~ 110 (383)
T PRK09860 65 YDGTQPNPT-TENVAAGLKLLKENNCDSVISLGG-----------GSPHDCAKGIALV 110 (383)
T ss_pred eCCCCCCcC-HHHHHHHHHHHHHcCCCEEEEeCC-----------chHHHHHHHHHHH
Confidence 667889998 678899999999999999887643 4555555555553
No 54
>PRK08452 flagellar protein FlaG; Provisional
Probab=32.82 E-value=2.2e+02 Score=22.81 Aligned_cols=50 Identities=12% Similarity=0.193 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHhcCCcEEEEecCCCCeEEE--EcCC-C---cccChhHHHHHHHHH
Q 022948 13 TAMALTRAAVLENNADLGVVFDTDVDRSGV--VDNK-G---NPINGDKLIALMSAI 62 (289)
Q Consensus 13 ~~l~~l~~~v~~~~adlGia~D~DgDR~~v--vd~~-G---~~l~~d~~~~Ll~~~ 62 (289)
...+.+-+.+...+.++-|.+|.+.+|+.+ +|.+ | +.+.+++++-|....
T Consensus 57 ~~ve~lN~~~~~~~~~L~F~~de~~~~~vVkVvD~~T~eVIRqIP~Ee~L~l~~~m 112 (124)
T PRK08452 57 ELTEKLNEEMKRLDTNIRFGYNDKIKGLVVSVKEANGGKVIREIPSKEAIELMEYM 112 (124)
T ss_pred HHHHHHHHHHHhhCCceEEEEcCCCCcEEEEEEECCCCceeeeCCCHHHHHHHHHH
Confidence 445566666777889999999999999776 4644 5 478889999887765
No 55
>COG0079 HisC Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase [Amino acid transport and metabolism]
Probab=32.53 E-value=2.7e+02 Score=26.29 Aligned_cols=47 Identities=19% Similarity=0.206 Sum_probs=37.8
Q ss_pred hhHHHHHHHHHHHhhCCCCeEEEcccCCHHHHHHHHHcCCcEEEeeccc
Q 022948 52 GDKLIALMSAIVLKEHPGTTIVTDARTSMALTKFITDRGGNHCLYRVGY 100 (289)
Q Consensus 52 ~d~~~~Ll~~~~l~~~~~~~vv~t~~ss~~l~~~a~~~g~~v~~t~vG~ 100 (289)
.|+++.++++.+.. ++..|+++..+=..-...++..|++++.++...
T Consensus 84 sde~i~~l~~~~~~--~gd~vl~~~Ptf~~Y~~~a~~~g~~~~~v~~~~ 130 (356)
T COG0079 84 SDELIELLVRAFVE--PGDTVLIPEPTFSMYEIAAQLAGAEVVKVPLKE 130 (356)
T ss_pred hHHHHHHHHHHhhc--CCCEEEEcCCChHHHHHHHHhcCCeEEEecccc
Confidence 47788888887654 456788888888888889999999999998764
No 56
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=31.84 E-value=16 Score=22.24 Aligned_cols=24 Identities=13% Similarity=-0.021 Sum_probs=17.7
Q ss_pred HHhcCCcEEEEecCCCCeEEEEcC
Q 022948 22 VLENNADLGVVFDTDVDRSGVVDN 45 (289)
Q Consensus 22 v~~~~adlGia~D~DgDR~~vvd~ 45 (289)
+...+.+...++.+||.++.++..
T Consensus 5 t~~~~~~~~p~~SpDGk~i~f~s~ 28 (39)
T PF07676_consen 5 TNSPGDDGSPAWSPDGKYIYFTSN 28 (39)
T ss_dssp S-SSSSEEEEEE-TTSSEEEEEEE
T ss_pred ccCCccccCEEEecCCCEEEEEec
Confidence 344567889999999999998853
No 57
>PF12909 DUF3832: Protein of unknown function (DUF3832); InterPro: IPR024308 This domain found in bacteria and Acanthamoeba polyphaga mimivirus (APMV) L591 protein has no known function. In Q0AZ30 from SWISSPROT and other uncharacterised proteins this domain is found C-terminal, while the N terminus shows remote homology to the bacterial toxin/antitoxin 'addiction module' (PF12910 from PFAM).; PDB: 3K6Q_C.
Probab=31.51 E-value=83 Score=23.69 Aligned_cols=33 Identities=15% Similarity=0.160 Sum_probs=22.4
Q ss_pred CceEEEEecCCCCccEEEEEEeCCh-hHHHHHHHHHhc
Q 022948 252 QYGWIHLRQSIHNPNIAVNVQSMVP-GGCRSITKSLRD 288 (289)
Q Consensus 252 ~~~w~liRpSgTEP~iriy~Ea~~~-~~~~~l~~~~~~ 288 (289)
++||+.+--.+. .||+++++. +..+.+.+.+++
T Consensus 15 ~dg~~~~~l~~l----di~~~g~T~eeA~~~lie~l~d 48 (89)
T PF12909_consen 15 DDGSITVSLPEL----DIYANGPTLEEAIEDLIEDLRD 48 (89)
T ss_dssp ETTEEEEEECCG----TEEEEESSHHHHHHHHHHHHHH
T ss_pred CCCeEEEEecCe----eEEecCCCHHHHHHHHHHHHHH
Confidence 678985554444 499999997 445666665543
No 58
>PRK15454 ethanol dehydrogenase EutG; Provisional
Probab=30.24 E-value=73 Score=30.53 Aligned_cols=46 Identities=24% Similarity=0.389 Sum_probs=34.4
Q ss_pred CCCCCCCCCChHHHHHHHHHHHhcCCcEEEEecCCCCeEEEEcCCCcccChhHHHHHH
Q 022948 2 FPNHIPNPEDKTAMALTRAAVLENNADLGVVFDTDVDRSGVVDNKGNPINGDKLIALM 59 (289)
Q Consensus 2 Fp~~~P~P~~~~~l~~l~~~v~~~~adlGia~D~DgDR~~vvd~~G~~l~~d~~~~Ll 59 (289)
|.+..|||. .+..+...+.+++.++|+.|++= -|..++--+..+++
T Consensus 83 ~~~v~~~P~-~~~v~~~~~~~r~~~~D~IiavG-----------GGS~iD~AKaia~~ 128 (395)
T PRK15454 83 WPCPVGEPC-ITDVCAAVAQLRESGCDGVIAFG-----------GGSVLDAAKAVALL 128 (395)
T ss_pred ECCCCCCcC-HHHHHHHHHHHHhcCcCEEEEeC-----------ChHHHHHHHHHHHH
Confidence 667789998 57788999999999999887764 34555555555544
No 59
>PRK06110 hypothetical protein; Provisional
Probab=29.30 E-value=3.4e+02 Score=24.92 Aligned_cols=39 Identities=13% Similarity=0.118 Sum_probs=27.6
Q ss_pred CeEEEcccCCHHHHHHHHHcCCcEEEeecccHHHHHHHh
Q 022948 70 TTIVTDARTSMALTKFITDRGGNHCLYRVGYRNVIDKGV 108 (289)
Q Consensus 70 ~~vv~t~~ss~~l~~~a~~~g~~v~~t~vG~k~i~~~~~ 108 (289)
..|++|-.++..-.+..+.+|++|+.+..++..-.+.+.
T Consensus 96 ~~ivvp~~~~~~k~~~i~~~GA~V~~~~~~~~~~~~~a~ 134 (322)
T PRK06110 96 ATIVVPHGNSVEKNAAMRALGAELIEHGEDFQAAREEAA 134 (322)
T ss_pred EEEEEcCCCCHHHHHHHHHcCCEEEEECCCHHHHHHHHH
Confidence 468888888777778889999999988655443333333
No 60
>PRK02991 D-serine dehydratase; Provisional
Probab=28.98 E-value=4.9e+02 Score=25.43 Aligned_cols=41 Identities=15% Similarity=0.165 Sum_probs=32.5
Q ss_pred CCeEEEcccCCHHHHHHHHHcCCcEEEeecccHHHHHHHhh
Q 022948 69 GTTIVTDARTSMALTKFITDRGGNHCLYRVGYRNVIDKGVH 109 (289)
Q Consensus 69 ~~~vv~t~~ss~~l~~~a~~~g~~v~~t~vG~k~i~~~~~~ 109 (289)
...|++|-.+|..-.+.++.+|++|+.+..++..-.+.+++
T Consensus 182 ~~tIvvP~~a~~~K~~~ir~~GAeVi~~~~~~~~a~~~A~~ 222 (441)
T PRK02991 182 KVTVHMSADARQWKKDKLRSHGVTVVEYEGDYGVAVEEGRK 222 (441)
T ss_pred CEEEEECCCCCHHHHHHHHhCCCEEEEECCCHHHHHHHHHH
Confidence 35799999999999999999999999998776544444433
No 61
>PF13199 Glyco_hydro_66: Glycosyl hydrolase family 66; PDB: 3VMO_A 3VMN_A 3VMP_A.
Probab=28.43 E-value=1.8e+02 Score=29.42 Aligned_cols=109 Identities=16% Similarity=0.102 Sum_probs=66.2
Q ss_pred HHHHHHHHHhcCCcEEEEecCCCCeEEEEcCCCccc-ChhHHHHHHHHHHHhhCCCCeEEEcccCCHHHHHHHHHcCCcE
Q 022948 15 MALTRAAVLENNADLGVVFDTDVDRSGVVDNKGNPI-NGDKLIALMSAIVLKEHPGTTIVTDARTSMALTKFITDRGGNH 93 (289)
Q Consensus 15 l~~l~~~v~~~~adlGia~D~DgDR~~vvd~~G~~l-~~d~~~~Ll~~~~l~~~~~~~vv~t~~ss~~l~~~a~~~g~~v 93 (289)
.+++.+.++..+.| |+-.|-=|+|-.+.|.+|+.+ +-....+=|...+-+..++..+|...+++...+.++......+
T Consensus 247 ~~q~~~~~~~~gFD-G~hlDq~G~~~~~~d~~G~~i~~l~~~y~~Fi~~~K~~~~~k~lv~N~V~~~g~~~~a~~~~~d~ 325 (559)
T PF13199_consen 247 INQMNKAIQNFGFD-GWHLDQLGNRGTVYDYDGNKIYDLSDGYASFINAMKEALPDKYLVFNAVSGYGIEQIAKTSKVDF 325 (559)
T ss_dssp HHHHHHHHHHHT---EEEEE-S--EEEEGGTT---GGECHHHHHHHHHHHHHHSTTSEEEEB-GGGTTHHHHTT-S--SS
T ss_pred HHHHHHHHHccCCc-eEeeeccCCCCccccCCCCCchhhHHHHHHHHHHHHHhCCCCceeeeccCccchhhhhcccccce
Confidence 45566667778888 999999999999999999998 6665666566666666677789999999999999998777777
Q ss_pred EEee-----cccHHHHHHHhhcccC----CceeeEEeecc
Q 022948 94 CLYR-----VGYRNVIDKGVHLNED----GIETHLMMETS 124 (289)
Q Consensus 94 ~~t~-----vG~k~i~~~~~~~~~~----g~~~~~g~E~s 124 (289)
+++. ..+..+.+.+.+.... |+..++|+-++
T Consensus 326 lY~EvW~~~~~Y~~Lk~~i~~~r~~~~~~gk~~V~AAYmn 365 (559)
T PF13199_consen 326 LYNEVWDDYDTYGDLKRIIDQNRKYTSSGGKSTVVAAYMN 365 (559)
T ss_dssp EEEE--SBS-BHHHHHHHHHHHHHHH---S--EEEE----
T ss_pred eeeecccccccHHHHHHHHHHHhhhhccccchhhhHHHhh
Confidence 7764 4566666666554322 44456666444
No 62
>PF14028 SpaB_C: SpaB C-terminal domain
Probab=27.94 E-value=91 Score=27.84 Aligned_cols=25 Identities=12% Similarity=0.282 Sum_probs=22.1
Q ss_pred ceEEEEecCCCCccEEEEEEeCChh
Q 022948 253 YGWIHLRQSIHNPNIAVNVQSMVPG 277 (289)
Q Consensus 253 ~~w~liRpSgTEP~iriy~Ea~~~~ 277 (289)
+.|+.||-....|.+|+++...+..
T Consensus 37 ~~wFFiRY~d~gpHLRLR~~~~~~~ 61 (283)
T PF14028_consen 37 DRWFFIRYWDPGPHLRLRFRGSPDA 61 (283)
T ss_pred cceEEEecCCCCCeEEEEEECCCcc
Confidence 4699999999999999999997654
No 63
>COG1576 Uncharacterized conserved protein [Function unknown]
Probab=27.57 E-value=1.4e+02 Score=24.96 Aligned_cols=51 Identities=10% Similarity=0.085 Sum_probs=33.9
Q ss_pred EEEecCCCCeEEEEcCCCcccChhHHHHHHHHHHHhhCCCCeEEEcccCCHHHH
Q 022948 30 GVVFDTDVDRSGVVDNKGNPINGDKLIALMSAIVLKEHPGTTIVTDARTSMALT 83 (289)
Q Consensus 30 Gia~D~DgDR~~vvd~~G~~l~~d~~~~Ll~~~~l~~~~~~~vv~t~~ss~~l~ 83 (289)
...-=++|+++++.|.+|+.++.++++..+..+-. .|..|+.=+--|.-++
T Consensus 60 il~~i~~~~~vi~Ld~~Gk~~sSe~fA~~l~~~~~---~G~~i~f~IGG~~Gl~ 110 (155)
T COG1576 60 ILAAIPKGSYVVLLDIRGKALSSEEFADFLERLRD---DGRDISFLIGGADGLS 110 (155)
T ss_pred HHHhcCCCCeEEEEecCCCcCChHHHHHHHHHHHh---cCCeEEEEEeCcccCC
Confidence 33344568899999999999999998888876632 2344554444444443
No 64
>cd08179 NADPH_BDH NADPH-dependent butanol dehydrogenase involved in the butanol and ethanol formation pathway in bacteria. NADPH-dependent butanol dehydrogenase (BDH) is involved in the butanol and ethanol formation pathway of some bacteria. The fermentation process is characterized by an acid producing growth phase, followed by a solvent producing phase. The latter phase is associated with the induction of solventogenic enzymes such as butanol dehydrogenase. The activity of the enzymes require NADPH as cofactor, as well as divalent ions zinc or iron. This family is a member of the iron-containing alcohol dehydrogenase superfamily. Protein structure has a dehydroquinate synthase-like fold.
Probab=27.51 E-value=91 Score=29.49 Aligned_cols=46 Identities=22% Similarity=0.358 Sum_probs=35.0
Q ss_pred CCCCCCCCCChHHHHHHHHHHHhcCCcEEEEecCCCCeEEEEcCCCcccChhHHHHHH
Q 022948 2 FPNHIPNPEDKTAMALTRAAVLENNADLGVVFDTDVDRSGVVDNKGNPINGDKLIALM 59 (289)
Q Consensus 2 Fp~~~P~P~~~~~l~~l~~~v~~~~adlGia~D~DgDR~~vvd~~G~~l~~d~~~~Ll 59 (289)
|.+..|||. .+..+...+.+++.++|+.|++= -|..++--+..+++
T Consensus 58 ~~~v~~~p~-~~~v~~~~~~~~~~~~D~IIavG-----------GGSviD~AK~ia~~ 103 (375)
T cd08179 58 FEGVEPDPS-VETVLKGAEAMREFEPDWIIALG-----------GGSPIDAAKAMWIF 103 (375)
T ss_pred eCCCCCCcC-HHHHHHHHHHHHhcCCCEEEEeC-----------CccHHHHHHHHHHH
Confidence 677889998 67888999999999998776654 45666666666554
No 65
>PF05991 NYN_YacP: YacP-like NYN domain; InterPro: IPR010298 This family consists of several hypothetical bacterial proteins as well as some uncharacterised sequences from Arabidopsis thaliana. The function of this family is unknown.
Probab=27.37 E-value=2.2e+02 Score=23.70 Aligned_cols=77 Identities=14% Similarity=0.183 Sum_probs=38.1
Q ss_pred HHHHHHHHHhcCCcEEEEecCCCCeEE------------EEcCCCcccChhHHHHHHHHHHHhhCC-CCeEEEcccCCHH
Q 022948 15 MALTRAAVLENNADLGVVFDTDVDRSG------------VVDNKGNPINGDKLIALMSAIVLKEHP-GTTIVTDARTSMA 81 (289)
Q Consensus 15 l~~l~~~v~~~~adlGia~D~DgDR~~------------vvd~~G~~l~~d~~~~Ll~~~~l~~~~-~~~vv~t~~ss~~ 81 (289)
++.|.......+..+.++||+-...-. +++..|+ +.|.++-=++.. ... +..|.+ ++|-..
T Consensus 32 i~~L~~y~~~~~~~v~VVFDa~~~~~~~~~~~~~~gi~Vvft~~~~--tAD~~Ie~~v~~---~~~~~~~v~V-VTSD~~ 105 (166)
T PF05991_consen 32 IEMLSEYAQFSGYEVIVVFDAYKVPGGSEEREEYGGIEVVFTKEGE--TADDYIERLVRE---LKNRPRQVTV-VTSDRE 105 (166)
T ss_pred HHHHHHHhcccCCEEEEEEeCCcCCCCCceeeeeCceEEEECCCCC--CHHHHHHHHHHH---hccCCCeEEE-EeCCHH
Confidence 444455555577889999997432211 1233332 444443333222 221 222221 345566
Q ss_pred HHHHHHHcCCcEEEee
Q 022948 82 LTKFITDRGGNHCLYR 97 (289)
Q Consensus 82 l~~~a~~~g~~v~~t~ 97 (289)
+...+...|+.++.+.
T Consensus 106 iq~~~~~~GA~~iss~ 121 (166)
T PF05991_consen 106 IQRAARGRGAKRISSE 121 (166)
T ss_pred HHHHHhhCCCEEEcHH
Confidence 6677777776655443
No 66
>PRK06732 phosphopantothenate--cysteine ligase; Validated
Probab=27.14 E-value=3.4e+02 Score=23.75 Aligned_cols=52 Identities=17% Similarity=0.282 Sum_probs=35.4
Q ss_pred hHHHHHHHHHHHhcCCcEEEEecC-----CCCeEEEEcCCCc--ccChhHHHHHHHHHH
Q 022948 12 KTAMALTRAAVLENNADLGVVFDT-----DVDRSGVVDNKGN--PINGDKLIALMSAIV 63 (289)
Q Consensus 12 ~~~l~~l~~~v~~~~adlGia~D~-----DgDR~~vvd~~G~--~l~~d~~~~Ll~~~~ 63 (289)
...++...+...+.++|+.+++|- |..+..+++.+|. ..+-.++...+++.+
T Consensus 166 ~~l~~~a~~kl~~~~~d~vvaN~~~~~~~~~~~~~~i~~~~~~~~~~K~~~a~~i~~~~ 224 (229)
T PRK06732 166 EELIKVARASLIKNQADYILANDLTDISADQHKALLVSKNEVYTAQTKEEIADLLLERI 224 (229)
T ss_pred HHHHHHHHHHHHHcCCCEEEEecccccCCCCcEEEEEeCCCeeeCCCHHHHHHHHHHHH
Confidence 455677777888899999999887 4566777877763 233455555555544
No 67
>PRK15138 aldehyde reductase; Provisional
Probab=26.95 E-value=90 Score=29.77 Aligned_cols=33 Identities=18% Similarity=0.199 Sum_probs=27.7
Q ss_pred CCCCCCCCCChHHHHHHHHHHHhcCCcEEEEecC
Q 022948 2 FPNHIPNPEDKTAMALTRAAVLENNADLGVVFDT 35 (289)
Q Consensus 2 Fp~~~P~P~~~~~l~~l~~~v~~~~adlGia~D~ 35 (289)
|.++.|||. .+..+...+.+++.++|+.|+.=|
T Consensus 62 f~~v~~~p~-~~~v~~~~~~~~~~~~D~IIaiGG 94 (387)
T PRK15138 62 FGGIEPNPT-YETLMKAVKLVREEKITFLLAVGG 94 (387)
T ss_pred ECCccCCCC-HHHHHHHHHHHHHcCCCEEEEeCC
Confidence 667789998 678999999999999998887643
No 68
>PF03646 FlaG: FlaG protein; InterPro: IPR005186 Although these proteins are known to be important for flagellar their exact function is unknown.; PDB: 2HC5_A.
Probab=26.69 E-value=2e+02 Score=21.81 Aligned_cols=51 Identities=22% Similarity=0.313 Sum_probs=35.9
Q ss_pred hHHHHHHHHHHHhcCCcEEEEecCCCCeEEE--EcC-CCc---ccChhHHHHHHHHH
Q 022948 12 KTAMALTRAAVLENNADLGVVFDTDVDRSGV--VDN-KGN---PINGDKLIALMSAI 62 (289)
Q Consensus 12 ~~~l~~l~~~v~~~~adlGia~D~DgDR~~v--vd~-~G~---~l~~d~~~~Ll~~~ 62 (289)
...++.+.+.+...+..+-|.+|.|.+|+++ +|. .|. .|.+++++-|....
T Consensus 40 ~~~v~~ln~~~~~~~~~l~F~vde~~~~~vVkViD~~T~eVIRqIP~Ee~l~l~~~l 96 (107)
T PF03646_consen 40 EEAVEKLNEFLQALNTSLRFSVDEESGRVVVKVIDKETGEVIRQIPPEELLDLAKRL 96 (107)
T ss_dssp HHHHHHHHHHHTTSS--EEEEEEEETTEEEEEEEETTT-SEEEEE-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCceEEEEecCCCcEEEEEEECCCCcEEEeCCcHHHHHHHHHH
Confidence 3456667777777899999999999999776 464 575 57889999887554
No 69
>COG4019 Uncharacterized protein conserved in archaea [Function unknown]
Probab=26.38 E-value=1.4e+02 Score=24.19 Aligned_cols=51 Identities=14% Similarity=0.130 Sum_probs=32.9
Q ss_pred CCCCCCCCCChHHHHHHHHHHHhcCCcEEEEe-----cCCCCeEEEEcCCCcccCh
Q 022948 2 FPNHIPNPEDKTAMALTRAAVLENNADLGVVF-----DTDVDRSGVVDNKGNPING 52 (289)
Q Consensus 2 Fp~~~P~P~~~~~l~~l~~~v~~~~adlGia~-----D~DgDR~~vvd~~G~~l~~ 52 (289)
||++..+-+.-.++....-.+.-.+||+.|+- -|.|.=+.+.|++|+.++.
T Consensus 69 ~~T~~ADlTrmPA~tKalmaldis~ADlvIARGRLGvPGSGsmlVimD~rgRlLtA 124 (156)
T COG4019 69 IDTRFADLTRMPALTKALMALDISKADLVIARGRLGVPGSGSMLVIMDERGRLLTA 124 (156)
T ss_pred CccchhhcccChHHHHHHHhccccCCcEEEeeccccCCCCCcEEEEEccccceeee
Confidence 56665444433334433334556899999874 5677777778999987764
No 70
>COG1454 EutG Alcohol dehydrogenase, class IV [Energy production and conversion]
Probab=25.96 E-value=1e+02 Score=29.50 Aligned_cols=49 Identities=22% Similarity=0.297 Sum_probs=38.8
Q ss_pred CCCCCCCCCChHHHHHHHHHHHhcCCcEEEEecCCCCeEEEEcCCCcccChhHHHHHHHHH
Q 022948 2 FPNHIPNPEDKTAMALTRAAVLENNADLGVVFDTDVDRSGVVDNKGNPINGDKLIALMSAI 62 (289)
Q Consensus 2 Fp~~~P~P~~~~~l~~l~~~v~~~~adlGia~D~DgDR~~vvd~~G~~l~~d~~~~Ll~~~ 62 (289)
|..+.|||. -+......+.+++.++|..|++=| |..++--+..++++..
T Consensus 63 f~~v~p~P~-~~~v~~~~~~~~~~~~D~iIalGG-----------GS~~D~AK~i~~~~~~ 111 (377)
T COG1454 63 FDEVEPEPT-IETVEAGAEVAREFGPDTIIALGG-----------GSVIDAAKAIALLAEN 111 (377)
T ss_pred ecCCCCCCC-HHHHHHHHHHHHhcCCCEEEEeCC-----------ccHHHHHHHHHHHhhC
Confidence 778899998 578888899999999999888753 5667777777766663
No 71
>cd08186 Fe-ADH8 Iron-containing alcohol dehydrogenase. Type III Iron-containing alcohol dehydrogenases (ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. The ADH of hyperthermophilic archaeon Thermococcus hydrothermalis oxidizes a series of primary aliphatic and aromatic alcohols preferentially from C2 to C8 but is also active towards methanol and glycerol and stereospecific for monoterpenes. It was suggested that the type III ADHs in microorganisms are involved in acetaldehyde detoxication rather than in alcohol turnover.
Probab=25.82 E-value=1e+02 Score=29.24 Aligned_cols=32 Identities=16% Similarity=0.156 Sum_probs=26.6
Q ss_pred CCCCCCCCCChHHHHHHHHHHHhcCCcEEEEec
Q 022948 2 FPNHIPNPEDKTAMALTRAAVLENNADLGVVFD 34 (289)
Q Consensus 2 Fp~~~P~P~~~~~l~~l~~~v~~~~adlGia~D 34 (289)
|++..|||. .+......+.+++.++|+.|++=
T Consensus 61 f~~v~~~p~-~~~v~~~~~~~~~~~~D~IIaiG 92 (383)
T cd08186 61 YNKVTPNPT-VDQVDEAAKLGREFGAQAVIAIG 92 (383)
T ss_pred eCCCCCCCC-HHHHHHHHHHHHHcCCCEEEEeC
Confidence 777889998 67888999999999998777654
No 72
>cd08185 Fe-ADH1 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenases-like (ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase fold and is a member of the iron-containing alcohol dehydrogenase-like family. They are distinct from other alcohol dehydrogenases which contain different protein domains. Proteins of this family have not been characterized. Their specific function is unknown. They are present in bacteria and archaea.
Probab=25.58 E-value=99 Score=29.25 Aligned_cols=46 Identities=30% Similarity=0.406 Sum_probs=33.7
Q ss_pred CCCCCCCCCChHHHHHHHHHHHhcCCcEEEEecCCCCeEEEEcCCCcccChhHHHHHH
Q 022948 2 FPNHIPNPEDKTAMALTRAAVLENNADLGVVFDTDVDRSGVVDNKGNPINGDKLIALM 59 (289)
Q Consensus 2 Fp~~~P~P~~~~~l~~l~~~v~~~~adlGia~D~DgDR~~vvd~~G~~l~~d~~~~Ll 59 (289)
|.++.|||. -+......+.+++.++|+.|++= -|..++--+..+++
T Consensus 60 ~~~v~~~p~-~~~v~~~~~~~~~~~~D~IiavG-----------GGS~iD~aK~ia~~ 105 (380)
T cd08185 60 FDKVEPNPT-TTTVMEGAALAREEGCDFVVGLG-----------GGSSMDTAKAIAFM 105 (380)
T ss_pred eCCccCCCC-HHHHHHHHHHHHHcCCCEEEEeC-----------CccHHHHHHHHHHH
Confidence 667889998 57788888999999998777664 34555555555544
No 73
>PF14272 Gly_rich_SFCGS: Glycine-rich SFCGS
Probab=25.25 E-value=59 Score=24.91 Aligned_cols=23 Identities=22% Similarity=0.263 Sum_probs=19.3
Q ss_pred HHHHHHHhcCCcEEEEecCCCCe
Q 022948 17 LTRAAVLENNADLGVVFDTDVDR 39 (289)
Q Consensus 17 ~l~~~v~~~~adlGia~D~DgDR 39 (289)
.+.+.+++++||+||+|=+.|--
T Consensus 37 klGdvM~~e~Ad~GiSFCGSGGA 59 (115)
T PF14272_consen 37 KLGDVMKKENADFGISFCGSGGA 59 (115)
T ss_pred hHHHHHHhhCCCcceEEecCCCc
Confidence 46788899999999999887763
No 74
>PRK09620 hypothetical protein; Provisional
Probab=25.01 E-value=3.4e+02 Score=23.82 Aligned_cols=52 Identities=10% Similarity=0.032 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHhcCCcEEEEecCC-----CCeEEEEcCCCcc---cChhHHHHHHHHHHH
Q 022948 13 TAMALTRAAVLENNADLGVVFDTD-----VDRSGVVDNKGNP---INGDKLIALMSAIVL 64 (289)
Q Consensus 13 ~~l~~l~~~v~~~~adlGia~D~D-----gDR~~vvd~~G~~---l~~d~~~~Ll~~~~l 64 (289)
..++...+...+.++|+.+++|-+ .+.+.+++.+|.. .+-.+++..+++.+.
T Consensus 161 ~l~~~A~~kl~~k~~D~ivaN~~~~~~g~~~~~~ii~~~~~~~~~~~K~~iA~~i~~~i~ 220 (229)
T PRK09620 161 ELFERAKNRMEEAKASVMIANSPHSLYSRGAMHYVIGQDGKGQLCNGKDETAKEIVKRLE 220 (229)
T ss_pred HHHHHHHHHHHHcCCCEEEECCcccccCCCcEEEEEeCCCccccCCCHHHHHHHHHHHHH
Confidence 456777888889999999999874 2457777777642 233555555555543
No 75
>PRK11761 cysM cysteine synthase B; Provisional
Probab=24.92 E-value=3.2e+02 Score=24.90 Aligned_cols=29 Identities=10% Similarity=0.064 Sum_probs=24.6
Q ss_pred CeEEEcccCCHHHHHHHHHcCCcEEEeec
Q 022948 70 TTIVTDARTSMALTKFITDRGGNHCLYRV 98 (289)
Q Consensus 70 ~~vv~t~~ss~~l~~~a~~~g~~v~~t~v 98 (289)
..|++|-.++..-.+.++.+|++|+.++.
T Consensus 89 ~~i~~p~~~~~~k~~~~~~~GA~v~~~~~ 117 (296)
T PRK11761 89 MKLIMPENMSQERRAAMRAYGAELILVPK 117 (296)
T ss_pred EEEEECCCCCHHHHHHHHHcCCEEEEeCC
Confidence 46888888888888888999999999986
No 76
>cd08181 PPD-like 1,3-propanediol dehydrogenase-like (PPD). 1,3-propanediol dehydrogenase-like (PPD). This family is a member of the iron-containing alcohol dehydrogenase superfamily, and exhibits a dehydroquinate synthase-like fold. Protein sequence similarity search and other biochemical evidences suggest that they are close to the iron-containing 1,3-propanediol dehydrogenase (EC 1.1.1.202). 1,3-propanediol dehydrogenase catalyzes the oxidation of propane-1,3-diol to 3-hydroxypropanal with the simultaneous reduction of NADP+ to NADPH. The protein structure of Thermotoga maritima TM0920 gene contains one NADP+ and one iron ion.
Probab=24.84 E-value=1.1e+02 Score=28.74 Aligned_cols=46 Identities=24% Similarity=0.346 Sum_probs=33.8
Q ss_pred CCCCCCCCCChHHHHHHHHHHHhcCCcEEEEecCCCCeEEEEcCCCcccChhHHHHHH
Q 022948 2 FPNHIPNPEDKTAMALTRAAVLENNADLGVVFDTDVDRSGVVDNKGNPINGDKLIALM 59 (289)
Q Consensus 2 Fp~~~P~P~~~~~l~~l~~~v~~~~adlGia~D~DgDR~~vvd~~G~~l~~d~~~~Ll 59 (289)
|.+..|||. -+......+.+++.++|+.|++= -|..++--+..+++
T Consensus 60 ~~~v~~~p~-~~~v~~~~~~~~~~~~D~IIavG-----------GGSviD~aK~ia~~ 105 (357)
T cd08181 60 FDEVEENPS-LETIMEAVEIAKKFNADFVIGIG-----------GGSPLDAAKAIAVL 105 (357)
T ss_pred eCCCCCCcC-HHHHHHHHHHHHhcCCCEEEEeC-----------CchHHHHHHHHHHH
Confidence 677789998 57888999999999998777664 45555555555543
No 77
>TIGR00689 rpiB_lacA_lacB sugar-phosphate isomerases, RpiB/LacA/LacB family. Proteins of known function in this family act as sugar (pentose and/or hexose)-phosphate isomerases, including the LacA and LacB subunits of galactose-6-phosphate isomerases from Gram-positive bacteria and RpiB. RpiB is the second ribose phosphate isomerase of E. coli. It lacks homology to RpiA, its inducer is unknown (but is not ribose), and it can be replaced by the homologous galactose-6-phosphate isomerase of Streptococcus mutans, all of which suggests that the ribose phosphate isomerase activity of RpiB is a secondary function. On the other hand, there appear to be a significant number of species which contain rpiB, lack rpiA and seem to require rpi activity in order to copplete the pentose phosphate pathway.
Probab=24.80 E-value=1.5e+02 Score=24.38 Aligned_cols=30 Identities=17% Similarity=0.226 Sum_probs=16.7
Q ss_pred CCCCC-hHHHHHHHHHHHhcCCcEEEEecCC
Q 022948 7 PNPED-KTAMALTRAAVLENNADLGVVFDTD 36 (289)
Q Consensus 7 P~P~~-~~~l~~l~~~v~~~~adlGia~D~D 36 (289)
.+|.+ |..-..+.+.|.+..+|.||.++|-
T Consensus 35 ~~~~dYpd~a~~va~~V~~g~~~~GIliCGt 65 (144)
T TIGR00689 35 DERVDYPDYAKLVADKVVAGEVSLGILICGT 65 (144)
T ss_pred CCCCChHHHHHHHHHHHHcCCCceEEEEcCC
Confidence 34443 5555566666666666666555543
No 78
>TIGR03577 EF_0830 conserved hypothetical protein EF_0830/AHA_3911. Members of this family of small (about 120 amino acid), relatively rare proteins are found in both Gram-positive (e.g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. The function is unknown.
Probab=24.79 E-value=59 Score=24.94 Aligned_cols=23 Identities=26% Similarity=0.299 Sum_probs=19.3
Q ss_pred HHHHHHHhcCCcEEEEecCCCCe
Q 022948 17 LTRAAVLENNADLGVVFDTDVDR 39 (289)
Q Consensus 17 ~l~~~v~~~~adlGia~D~DgDR 39 (289)
.|.+.+++++||+||+|=+.|--
T Consensus 37 klGdVM~~e~Ad~GiSFCGSGGA 59 (115)
T TIGR03577 37 KLGDVMKQENADLGISFCGSGGA 59 (115)
T ss_pred hHHHHHhhhcCccceEEecCCCc
Confidence 46788899999999999887763
No 79
>PRK08638 threonine dehydratase; Validated
Probab=24.79 E-value=2.9e+02 Score=25.71 Aligned_cols=40 Identities=13% Similarity=0.085 Sum_probs=30.5
Q ss_pred CeEEEcccCCHHHHHHHHHcCCcEEEeecccHHHHHHHhh
Q 022948 70 TTIVTDARTSMALTKFITDRGGNHCLYRVGYRNVIDKGVH 109 (289)
Q Consensus 70 ~~vv~t~~ss~~l~~~a~~~g~~v~~t~vG~k~i~~~~~~ 109 (289)
-.|++|-.++..-...++.+|.+|+.++-++..-.+.+++
T Consensus 101 ~~iv~p~~~~~~k~~~~~~~GA~V~~~~~~~~~~~~~a~~ 140 (333)
T PRK08638 101 GKVVMPKGAPKSKVAATCGYGAEVVLHGDNFNDTIAKVEE 140 (333)
T ss_pred EEEEeCCCCcHHHHHHHHHcCCEEEEECcCHHHHHHHHHH
Confidence 4688898888888889999999999998665544444444
No 80
>PRK08813 threonine dehydratase; Provisional
Probab=24.75 E-value=3e+02 Score=25.99 Aligned_cols=38 Identities=8% Similarity=-0.032 Sum_probs=29.2
Q ss_pred CeEEEcccCCHHHHHHHHHcCCcEEEeecccHHHHHHH
Q 022948 70 TTIVTDARTSMALTKFITDRGGNHCLYRVGYRNVIDKG 107 (289)
Q Consensus 70 ~~vv~t~~ss~~l~~~a~~~g~~v~~t~vG~k~i~~~~ 107 (289)
..|++|-.++..-.+.++.+|++|+.+.-.+..-.+.+
T Consensus 107 ~~IvvP~~~~~~K~~~i~~~GAeVv~~g~~~~~a~~~a 144 (349)
T PRK08813 107 AITVMPHGAPQTKIAGVAHWGATVRQHGNSYDEAYAFA 144 (349)
T ss_pred EEEEEcCCCCHHHHHHHHHcCCEEEEECCCHHHHHHHH
Confidence 47889999998888888999999998876554433333
No 81
>cd06395 PB1_Map2k5 PB1 domain is essential part of the mitogen-activated protein kinase kinase 5 (Map2k5, alias MEK5) one of the key member of the signaling kinases cascade which involved in angiogenesis and early cardiovascular development. The PB1 domain of Map2k5 interacts with the PB1 domain of another members of kinase cascade MEKK2 (or MEKK3). A canonical PB1-PB1 interaction, involving heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. The Map2k5 protein contains a type I PB1 domain.
Probab=24.33 E-value=82 Score=23.31 Aligned_cols=42 Identities=19% Similarity=0.161 Sum_probs=25.1
Q ss_pred HHHHHHHHHhcCCcEEEEecCCCCeEEEEcCCCcccChhHHHHHHHHHH
Q 022948 15 MALTRAAVLENNADLGVVFDTDVDRSGVVDNKGNPINGDKLIALMSAIV 63 (289)
Q Consensus 15 l~~l~~~v~~~~adlGia~D~DgDR~~vvd~~G~~l~~d~~~~Ll~~~~ 63 (289)
|+.+.+.....-.-.-=-=|.||||+.+- +.+++-+++.+|+
T Consensus 29 L~~I~~vlp~aT~tAFeYEDE~gDRITVR-------SDeEm~AMlsyy~ 70 (91)
T cd06395 29 LDVIGQVLPEATTTAFEYEDEDGDRITVR-------SDEEMKAMLSYYC 70 (91)
T ss_pred HHHHHHhcccccccceeeccccCCeeEec-------chHHHHHHHHHHH
Confidence 33444444433333333458999999765 4567777777664
No 82
>cd08178 AAD_C C-terminal alcohol dehydrogenase domain of the acetaldehyde dehydrogenase-alcohol dehydrogenase bifunctional two-domain protein (AAD). Alcohol dehydrogenase domain located on the C-terminal of a bifunctional two-domain protein. The N-terminal of the protein contains an acetaldehyde-CoA dehydrogenase domain. This protein is involved in pyruvate metabolism. Pyruvate is converted to acetyl-CoA and formate by pyruvate formate-lysase (PFL). Under anaerobic condition, acetyl-CoA is reduced to acetaldehyde and ethanol by this two-domain protein. Acetyl-CoA is first converted into an enzyme-bound thiohemiacetal by the N-terminal acetaldehyde dehydrogenase domain. The enzyme-bound thiohemiacetal is subsequently reduced by the C-terminal NAD+-dependent alcohol dehydrogenase domain. In E. coli, this protein is called AdhE and was shown pyruvate formate-lysase (PFL) deactivase activity, which is involved in the inactivation of PFL, a key enzyme in anaerobic metabolism. In Escherichi
Probab=24.08 E-value=1.1e+02 Score=29.17 Aligned_cols=32 Identities=13% Similarity=0.172 Sum_probs=26.4
Q ss_pred CCCCCCCCCChHHHHHHHHHHHhcCCcEEEEec
Q 022948 2 FPNHIPNPEDKTAMALTRAAVLENNADLGVVFD 34 (289)
Q Consensus 2 Fp~~~P~P~~~~~l~~l~~~v~~~~adlGia~D 34 (289)
|++..|||. -+..+...+.+++.++|+.|++=
T Consensus 55 f~~v~~~p~-~~~v~~~~~~~~~~~~D~IIaiG 86 (398)
T cd08178 55 FSDVEPDPS-LETVRKGLELMNSFKPDTIIALG 86 (398)
T ss_pred ecCCCCCcC-HHHHHHHHHHHHhcCCCEEEEeC
Confidence 777899998 57788889999999998777654
No 83
>cd08176 LPO Lactadehyde:propanediol oxidoreductase (LPO) catalyzes the interconversion between L-lactaldehyde and L-1,2-propanediol in Escherichia coli and other enterobacteria. Lactadehyde:propanediol oxidoreductase (LPO) is a member of the group III iron-activated dehydrogenases which catalyze the interconversion between L-lactaldehyde and L-1,2-propanediol in Escherichia coli and other enterobacteria. L-Fucose and L-rhamnose is used by Escherichia coli through an inducible pathway mediated by the fucose regulon comprising four linked oeprons fucO, fucA, fucPIK, and fucR. The fucA-encoded aldolase catalyzes the formation of dihydroxyacetone phosphate and L-lactaldehyde. Under anaerobic conditions, with NADH as a cofactor, lactaldehyde is converted by a fucO-encoded Lactadehyde:propanediol oxidoreductase (LPO) to L-1,2-propanediol, which is excreted as a fermentation product. In mutant strains, E. coli adapted to grow on L-1,2-propanediol, FucO catalyzes the oxidation of the polyol to
Probab=23.94 E-value=1.2e+02 Score=28.76 Aligned_cols=33 Identities=18% Similarity=0.218 Sum_probs=26.9
Q ss_pred CCCCCCCCCChHHHHHHHHHHHhcCCcEEEEecC
Q 022948 2 FPNHIPNPEDKTAMALTRAAVLENNADLGVVFDT 35 (289)
Q Consensus 2 Fp~~~P~P~~~~~l~~l~~~v~~~~adlGia~D~ 35 (289)
|.+..|||. .+.++.+.+.+++.++|+.|+.=|
T Consensus 62 f~~v~~~p~-~~~v~~~~~~~~~~~~D~IIavGG 94 (377)
T cd08176 62 YDGVKPNPT-ITNVKDGLAVFKKEGCDFIISIGG 94 (377)
T ss_pred eCCCCCCCC-HHHHHHHHHHHHhcCCCEEEEeCC
Confidence 667789998 678999999999999987776643
No 84
>PF00017 SH2: SH2 domain; InterPro: IPR000980 The Src homology 2 (SH2) domain is a protein domain of about 100 amino-acid residues first identified as a conserved sequence region between the oncoproteins Src and Fps []. Similar sequences were later found in many other intracellular signal-transducing proteins []. SH2 domains function as regulatory modules of intracellular signalling cascades by interacting with high affinity to phosphotyrosine-containing target peptides in a sequence-specific, SH2 domains recognise between 3-6 residues C-terminal to the phosphorylated tyrosine in a fashion that differs from one SH2 domain to another, and strictly phosphorylation-dependent manner [, , , ]. They are found in a wide variety of protein contexts e.g., in association with catalytic domains of phospholipase Cy (PLCy) and the non-receptor protein tyrosine kinases; within structural proteins such as fodrin and tensin; and in a group of small adaptor molecules, i.e Crk and Nck. The domains are frequently found as repeats in a single protein sequence and will then often bind both mono- and di-phosphorylated substrates. The structure of the SH2 domain belongs to the alpha+beta class, its overall shape forming a compact flattened hemisphere. The core structural elements comprise a central hydrophobic anti-parallel beta-sheet, flanked by 2 short alpha-helices. The loop between strands 2 and 3 provides many of the binding interactions with the phosphate group of its phosphopeptide ligand, and is hence designated the phosphate binding loop, the phosphorylated ligand binds perpendicular to the beta-sheet and typically interacts with the phosphate binding loop and a hydrophobic binding pocket that interacts with a pY+3 side chain. The N- and C-termini of the domain are close together in space and on the opposite face from the phosphopeptide binding surface and it has been speculated that this has facilitated their integration into surface-exposed regions of host proteins [].; GO: 0005515 protein binding; PDB: 1M27_A 1KA6_A 1D4W_B 1D4T_A 1D1Z_B 1KA7_A 1UUR_A 1UUS_A 1BLJ_A 1BLK_A ....
Probab=23.92 E-value=47 Score=23.32 Aligned_cols=14 Identities=29% Similarity=0.337 Sum_probs=12.3
Q ss_pred CceEEEEecCCCCc
Q 022948 252 QYGWIHLRQSIHNP 265 (289)
Q Consensus 252 ~~~w~liRpSgTEP 265 (289)
.+|..|||+|.+.|
T Consensus 20 ~~G~FLvR~s~~~~ 33 (77)
T PF00017_consen 20 PDGTFLVRPSSSKP 33 (77)
T ss_dssp STTEEEEEEESSST
T ss_pred CCCeEEEEeccccc
Confidence 57999999999876
No 85
>PF09981 DUF2218: Uncharacterized protein conserved in bacteria (DUF2218); InterPro: IPR014543 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.; PDB: 2JPI_A.
Probab=23.92 E-value=2e+02 Score=21.45 Aligned_cols=41 Identities=10% Similarity=0.105 Sum_probs=29.0
Q ss_pred CceEEEEeecccCCceEEEEecCCCCccEEEEEEeCChhHHHHHHHHHh
Q 022948 239 RMYRAKVTDEEHGQYGWIHLRQSIHNPNIAVNVQSMVPGGCRSITKSLR 287 (289)
Q Consensus 239 DGiki~~~~~~~~~~~w~liRpSgTEP~iriy~Ea~~~~~~~~l~~~~~ 287 (289)
+.-+|.| +.|-+.+++++ -.+.+.+||.+++.+..+..-+.
T Consensus 32 ~~g~i~f------~~G~~~l~a~~--~~L~l~vea~~~~~L~~~~~vv~ 72 (89)
T PF09981_consen 32 DSGRITF------PFGTCTLSAEP--DALTLRVEAPDAEALARLEDVVA 72 (89)
T ss_dssp SEEEEE-------SSS-EEEEEET--TEEEEEEEESSHHHHHHHHHHHH
T ss_pred CceEEEe------CCEEEEEEeCC--CeEEEEEEeCCHHHHHHHHHHHH
Confidence 3457888 77888888754 46888889999888887766543
No 86
>PLN02970 serine racemase
Probab=23.54 E-value=3.3e+02 Score=25.16 Aligned_cols=40 Identities=10% Similarity=0.013 Sum_probs=30.3
Q ss_pred CeEEEcccCCHHHHHHHHHcCCcEEEeecccHHHHHHHhh
Q 022948 70 TTIVTDARTSMALTKFITDRGGNHCLYRVGYRNVIDKGVH 109 (289)
Q Consensus 70 ~~vv~t~~ss~~l~~~a~~~g~~v~~t~vG~k~i~~~~~~ 109 (289)
-.|++|-.++..-.+..+.+|++|+.++..+....+.+.+
T Consensus 101 ~~ivvp~~~~~~k~~~~~~~GA~Vi~~~~~~~~~~~~a~~ 140 (328)
T PLN02970 101 AYIVVPKNAPACKVDAVIRYGGIITWCEPTVESREAVAAR 140 (328)
T ss_pred EEEEECCCCCHHHHHHHHhcCCEEEEeCCCHHHHHHHHHH
Confidence 4788898888887888899999999999765544333333
No 87
>PRK14644 hypothetical protein; Provisional
Probab=23.18 E-value=1.4e+02 Score=24.14 Aligned_cols=30 Identities=13% Similarity=0.059 Sum_probs=24.4
Q ss_pred EecCCCCccEEEEEEeCChhHHHHHHHHHh
Q 022948 258 LRQSIHNPNIAVNVQSMVPGGCRSITKSLR 287 (289)
Q Consensus 258 iRpSgTEP~iriy~Ea~~~~~~~~l~~~~~ 287 (289)
+...+-.+.+|||++..+.+.|+.+.+.+.
T Consensus 20 ~~~~~~~~~LrV~Idk~~iddC~~vSr~is 49 (136)
T PRK14644 20 IVKEDGDLFLEVILNSRDLKDIEELTKEIS 49 (136)
T ss_pred EEeCCCCEEEEEEECCCCHHHHHHHHHHHH
Confidence 456677788899999889999998888764
No 88
>PRK07544 branched-chain amino acid aminotransferase; Validated
Probab=22.33 E-value=4.1e+02 Score=23.97 Aligned_cols=69 Identities=12% Similarity=0.013 Sum_probs=43.4
Q ss_pred HHHHHhcCCcEEEEecCCCC-------eEEEEcCCCcccChhHHHHHHHHHHHhhCCCCeEEEcccCCHHHHHHHHHcCC
Q 022948 19 RAAVLENNADLGVVFDTDVD-------RSGVVDNKGNPINGDKLIALMSAIVLKEHPGTTIVTDARTSMALTKFITDRGG 91 (289)
Q Consensus 19 ~~~v~~~~adlGia~D~DgD-------R~~vvd~~G~~l~~d~~~~Ll~~~~l~~~~~~~vv~t~~ss~~l~~~a~~~g~ 91 (289)
.+.+++.++|-++.+|.||. .++++. +|.+++|.. . .+ .+=.+=..+-+.+++.|.
T Consensus 169 ~~~A~~~G~deal~ld~~g~V~E~~~sNlf~v~-~~~l~TP~~--------------~-~~-L~GItR~~vl~~a~~~g~ 231 (292)
T PRK07544 169 KHAAEAKGYADALMLDYRGYVAEATGANIFFVK-DGVIHTPTP--------------D-CF-LDGITRQTVIELAKRRGI 231 (292)
T ss_pred HHHHHHcCCCeEEEECCCCCEEEcCceEEEEEE-CCEEECCCC--------------c-cc-ccchhHHHHHHHHHHcCC
Confidence 56677889999999998884 333332 345555531 0 11 111222344567888999
Q ss_pred cEEEeecccHHHH
Q 022948 92 NHCLYRVGYRNVI 104 (289)
Q Consensus 92 ~v~~t~vG~k~i~ 104 (289)
+|...++....+.
T Consensus 232 ~v~e~~i~~~eL~ 244 (292)
T PRK07544 232 EVVERHIMPEELA 244 (292)
T ss_pred eEEEEecCHHHHh
Confidence 9999998877653
No 89
>cd06447 D-Ser-dehyd D-Serine dehydratase is a pyridoxal phosphate (PLP)-dependent enzyme which catalyzes the conversion of L- or D-serine to pyruvate and ammonia. D-serine dehydratase serves as a detoxifying enzyme in most E. coli strains where D-serine is a competitive antagonist of beta-alanine in the biosynthetic pathway to pentothenate and coenzyme A. D-serine dehydratase is different from other pyridoxal-5'-phosphate-dependent enzymes in that it catalyzes alpha, beta-elimination reactions on amino acids.
Probab=21.99 E-value=6.8e+02 Score=24.12 Aligned_cols=41 Identities=15% Similarity=0.242 Sum_probs=32.1
Q ss_pred CCeEEEcccCCHHHHHHHHHcCCcEEEeecccHHHHHHHhh
Q 022948 69 GTTIVTDARTSMALTKFITDRGGNHCLYRVGYRNVIDKGVH 109 (289)
Q Consensus 69 ~~~vv~t~~ss~~l~~~a~~~g~~v~~t~vG~k~i~~~~~~ 109 (289)
...|++|-.+|..-.+..+.+|++|+.+..++..-.+.+.+
T Consensus 159 ~~~IvvP~~~~~~K~~~ira~GAeVv~v~~~~~~a~~~a~~ 199 (404)
T cd06447 159 KVTVHMSADAKQWKKDKLRSKGVTVVEYETDYSKAVEEGRK 199 (404)
T ss_pred CEEEEECCCCcHHHHHHHHHCCCEEEEECCCHHHHHHHHHH
Confidence 34799999999999999999999999998665544344333
No 90
>TIGR01120 rpiB ribose 5-phosphate isomerase B. Involved in the non-oxidative branch of the pentose phospate pathway.
Probab=21.84 E-value=1.8e+02 Score=23.86 Aligned_cols=30 Identities=17% Similarity=0.126 Sum_probs=15.5
Q ss_pred CCCCC-hHHHHHHHHHHHhcCCcEEEEecCC
Q 022948 7 PNPED-KTAMALTRAAVLENNADLGVVFDTD 36 (289)
Q Consensus 7 P~P~~-~~~l~~l~~~v~~~~adlGia~D~D 36 (289)
++|.+ |..-..+.+.|.+..+|.||.++|-
T Consensus 36 ~~~~dYpd~a~~va~~V~~~~~~~GIliCGt 66 (143)
T TIGR01120 36 SERTDYPHYAKQVALAVAGGEVDGGILICGT 66 (143)
T ss_pred CCCCCHHHHHHHHHHHHHCCCCceEEEEcCC
Confidence 34443 4444555566665555555555543
No 91
>PRK07048 serine/threonine dehydratase; Validated
Probab=21.42 E-value=4e+02 Score=24.43 Aligned_cols=32 Identities=22% Similarity=0.157 Sum_probs=25.8
Q ss_pred CeEEEcccCCHHHHHHHHHcCCcEEEeecccH
Q 022948 70 TTIVTDARTSMALTKFITDRGGNHCLYRVGYR 101 (289)
Q Consensus 70 ~~vv~t~~ss~~l~~~a~~~g~~v~~t~vG~k 101 (289)
..|++|-.++..-...++.+|++|+.++.-+.
T Consensus 98 ~~vvvp~~~~~~k~~~~~~~GAeV~~~~~~~~ 129 (321)
T PRK07048 98 ATIVMPQDAPAAKVAATRGYGGEVVTYDRYTE 129 (321)
T ss_pred EEEEECCCCCHHHHHHHHHCCCEEEEECCCHH
Confidence 46888888888878888899999999985443
No 92
>cd08193 HVD 5-hydroxyvalerate dehydrogenase (HVD) catalyzes the oxidation of 5-hydroxyvalerate to 5-oxovalerate with NAD+ as cofactor. 5-hydroxyvalerate dehydrogenase (HVD) is an iron-containing (type III) NAD-dependent alcohol dehydrogenase. It plays a role in the cyclopentanol metabolism biochemical pathway. It catalyzes the oxidation of 5-hydroxyvalerate to 5-oxovalerate with NAD+ as cofactor. This cyclopentanol (cpn) degradation pathway is present in some bacteria which can use cyclopentanol as sole carbon source. In Comamonas sp. strain NCIMB 9872, this enzyme is encoded by the CpnD gene.
Probab=21.25 E-value=1.4e+02 Score=28.24 Aligned_cols=47 Identities=21% Similarity=0.339 Sum_probs=34.5
Q ss_pred CCCCCCCCCChHHHHHHHHHHHhcCCcEEEEecCCCCeEEEEcCCCcccChhHHHHHHH
Q 022948 2 FPNHIPNPEDKTAMALTRAAVLENNADLGVVFDTDVDRSGVVDNKGNPINGDKLIALMS 60 (289)
Q Consensus 2 Fp~~~P~P~~~~~l~~l~~~v~~~~adlGia~D~DgDR~~vvd~~G~~l~~d~~~~Ll~ 60 (289)
|.+..|||. .+.+....+.+++.++|+.|++ .-|..++--+..++++
T Consensus 60 ~~~v~~~p~-~~~v~~~~~~~~~~~~D~IIai-----------GGGs~iD~aK~ia~~~ 106 (376)
T cd08193 60 FDDVEADPP-EAVVEAAVEAARAAGADGVIGF-----------GGGSSMDVAKLVAVLA 106 (376)
T ss_pred ECCCCCCcC-HHHHHHHHHHHHhcCCCEEEEe-----------CCchHHHHHHHHHHHH
Confidence 667789998 6789999999999988876665 3456666666655543
No 93
>PF08812 YtxC: YtxC-like family; InterPro: IPR014199 This uncharacterised protein is one of a number of proteins conserved in all known endospore-forming Firmicutes (low-GC Gram-positive bacteria), including Carboxydothermus hydrogenoformans, and it is not found in non-endospore forming species. It is uniformly distributed in the mother cell cytoplasm in Bacillus subtilis [].
Probab=20.68 E-value=5e+02 Score=22.72 Aligned_cols=32 Identities=28% Similarity=0.453 Sum_probs=26.8
Q ss_pred EEEEecCCCCeEEEEcCCCcccChhHHHHHHHH
Q 022948 29 LGVVFDTDVDRSGVVDNKGNPINGDKLIALMSA 61 (289)
Q Consensus 29 lGia~D~DgDR~~vvd~~G~~l~~d~~~~Ll~~ 61 (289)
+=+.++++|. +.+.|++|+.++.+.+..++..
T Consensus 139 vhvv~~~~g~-f~l~D~~~~~i~~~~~~~~~~~ 170 (221)
T PF08812_consen 139 VHVVIDEDGS-FILYDEEGKPISNEELEEYIDE 170 (221)
T ss_pred EEEEEeCCCc-EEEEcCCCCCCCHHHHHHHHHH
Confidence 4567787776 8899999999999998887777
No 94
>TIGR02638 lactal_redase lactaldehyde reductase. This clade of genes encoding iron-containing alcohol dehydrogenase (pfam00465) proteins is generally found in apparent operons for the catabolism of rhamnose or fucose. Catabolism of both of these monosaccharides results in lactaldehyde which is reduced by this enzyme to 1,2 propanediol. This protein is alternatively known by the name 1,2 propanediol oxidoreductase. This enzyme is active under anaerobic conditions in E. coli while being inactivated by reactive oxygen species under aerobic conditions. Under aerobic conditions the lactaldehyde product of rhamnose and fucose catabolism is believed to be oxidized to lactate by a separate enzyme, lactaldehyde dehydrogenase.
Probab=20.50 E-value=1.5e+02 Score=28.11 Aligned_cols=33 Identities=27% Similarity=0.298 Sum_probs=26.5
Q ss_pred CCCCCCCCCChHHHHHHHHHHHhcCCcEEEEecC
Q 022948 2 FPNHIPNPEDKTAMALTRAAVLENNADLGVVFDT 35 (289)
Q Consensus 2 Fp~~~P~P~~~~~l~~l~~~v~~~~adlGia~D~ 35 (289)
|++..|||. -+......+.+++.++|+.+++=|
T Consensus 63 ~~~v~~~p~-~~~v~~~~~~~~~~~~D~IiaiGG 95 (379)
T TIGR02638 63 FDEVKPNPT-ITVVKAGVAAFKASGADYLIAIGG 95 (379)
T ss_pred ECCCCCCcC-HHHHHHHHHHHHhcCCCEEEEeCC
Confidence 667789998 577888899999999987776643
No 95
>cd08189 Fe-ADH5 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase-like fold and belongs to the alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contains different protein domain. Proteins of this family have not been characterized. Their specific function is unknown.
Probab=20.21 E-value=1.5e+02 Score=27.91 Aligned_cols=32 Identities=19% Similarity=0.204 Sum_probs=26.2
Q ss_pred CCCCCCCCCChHHHHHHHHHHHhcCCcEEEEec
Q 022948 2 FPNHIPNPEDKTAMALTRAAVLENNADLGVVFD 34 (289)
Q Consensus 2 Fp~~~P~P~~~~~l~~l~~~v~~~~adlGia~D 34 (289)
|.+..|||. .+..+...+.+++.++|+.|++=
T Consensus 60 ~~~v~~~p~-~~~v~~~~~~~~~~~~d~IIaiG 91 (374)
T cd08189 60 YDGVPPDPT-IENVEAGLALYRENGCDAILAVG 91 (374)
T ss_pred eCCCCCCcC-HHHHHHHHHHHHhcCCCEEEEeC
Confidence 666789998 67888999999999998777654
No 96
>PRK13410 molecular chaperone DnaK; Provisional
Probab=20.04 E-value=5.3e+02 Score=26.65 Aligned_cols=69 Identities=10% Similarity=-0.042 Sum_probs=47.1
Q ss_pred cEEEEecCCCCeEEEEcCCCcccChhHHHHHHHHHHHhh------CCCCeEEEcccCCH------HHHHHHHHcCCcEEE
Q 022948 28 DLGVVFDTDVDRSGVVDNKGNPINGDKLIALMSAIVLKE------HPGTTIVTDARTSM------ALTKFITDRGGNHCL 95 (289)
Q Consensus 28 dlGia~D~DgDR~~vvd~~G~~l~~d~~~~Ll~~~~l~~------~~~~~vv~t~~ss~------~l~~~a~~~g~~v~~ 95 (289)
-+-+..|++|+-.+-+...++.++++++.+++...+... .+-..+|+|+.+.. ++.+.|+..|.++.+
T Consensus 88 ~~~v~~~~~g~~~i~~~~~~~~~speel~a~iL~~lk~~ae~~lg~~v~~~VITVPa~f~~~qR~a~~~Aa~~AGl~v~~ 167 (668)
T PRK13410 88 PYTIRRNEQGNVRIKCPRLEREFAPEELSAMILRKLADDASRYLGEPVTGAVITVPAYFNDSQRQATRDAGRIAGLEVER 167 (668)
T ss_pred CeEEEECCCCcEEEEEecCCeEEcHHHHHHHHHHHHHHHHHHHhCCCcceEEEEECCCCCHHHHHHHHHHHHHcCCCeEE
Confidence 466677777764443455678999999999999887652 12234666665443 456778888998876
Q ss_pred e
Q 022948 96 Y 96 (289)
Q Consensus 96 t 96 (289)
.
T Consensus 168 l 168 (668)
T PRK13410 168 I 168 (668)
T ss_pred E
Confidence 5
Done!