BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 022949
(289 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4BC5|A Chain A, Crystal Structure Of Human D-xylulokinase In Complex With
Inhibitor 5-deoxy-5-fluoro-d-xylulose
pdb|4BC5|B Chain B, Crystal Structure Of Human D-xylulokinase In Complex With
Inhibitor 5-deoxy-5-fluoro-d-xylulose
pdb|4BC5|C Chain C, Crystal Structure Of Human D-xylulokinase In Complex With
Inhibitor 5-deoxy-5-fluoro-d-xylulose
Length = 538
Score = 275 bits (702), Expect = 3e-74, Method: Compositional matrix adjust.
Identities = 139/278 (50%), Positives = 181/278 (65%), Gaps = 2/278 (0%)
Query: 13 LGFDSSTQSLKATVLDSNLNIVASEQLQFDSELPHYKTKDGVYRDPSNNGRIVSPTLMWI 72
LG+D STQ +K +D+ LN+ E + FD +LP + T+ GV+ + + SP LMW+
Sbjct: 13 LGWDFSTQQVKVVAVDAELNVFYEESVHFDRDLPEFGTQGGVHVH-KDGLTVTSPVLMWV 71
Query: 73 EAXXXXXXXXXXXXX-XXXVTAVSGSGQQHGSVYWKKGSATILSSLDPKKPLVDQLGDAF 131
+A V A+SG+GQQHGS+YWK G+ L+SL P L QL D F
Sbjct: 72 QALDIILEKMKASGFDFSQVLALSGAGQQHGSIYWKAGAQQALTSLSPDLRLHQQLQDCF 131
Query: 132 STKESPVWMDSSTTAQCREIEKAVGGALELSKLTGSRGYERFTGPQIRKLFQTQPGVYDD 191
S + PVWMDSSTTAQCR++E AVGGA LS LTGSR YERFTG QI K++Q P Y
Sbjct: 132 SISDCPVWMDSSTTAQCRQLEAAVGGAQALSCLTGSRAYERFTGNQIAKIYQQNPEAYSH 191
Query: 192 TERISVVSSFMASLLIGAYACIDETDAAGMNLMDIRQRVWSKIVLEATAPSLEEKLGKLA 251
TERIS+VSSF ASL +G+Y+ ID +D +GMNL+ I+ +VWS+ L A AP LEEKL
Sbjct: 192 TERISLVSSFAASLFLGSYSPIDYSDGSGMNLLQIQDKVWSQACLGACAPHLEEKLSPPV 251
Query: 252 PAHAVAGCIAPYFVERFHFNKNCLVVQWSGDNPNSLAG 289
P+ +V G I+ Y+V+R+ F C VV ++GDNP SLAG
Sbjct: 252 PSCSVVGAISSYYVQRYGFPPGCKVVAFTGDNPASLAG 289
>pdb|4BC2|A Chain A, Crystal Structure Of Human D-xylulokinase In Complex With
D- Xylulose And Adenosine Diphosphate
pdb|4BC2|B Chain B, Crystal Structure Of Human D-xylulokinase In Complex With
D- Xylulose And Adenosine Diphosphate
pdb|4BC2|C Chain C, Crystal Structure Of Human D-xylulokinase In Complex With
D- Xylulose And Adenosine Diphosphate
pdb|4BC3|A Chain A, Crystal Structure Of Human D-xylulokinase
pdb|4BC3|B Chain B, Crystal Structure Of Human D-xylulokinase
pdb|4BC3|C Chain C, Crystal Structure Of Human D-xylulokinase
pdb|4BC4|A Chain A, Crystal Structure Of Human D-xylulokinase In Complex With
D- Xylulose
pdb|4BC4|B Chain B, Crystal Structure Of Human D-xylulokinase In Complex With
D- Xylulose
pdb|4BC4|C Chain C, Crystal Structure Of Human D-xylulokinase In Complex With
D- Xylulose
Length = 538
Score = 266 bits (680), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 137/278 (49%), Positives = 179/278 (64%), Gaps = 2/278 (0%)
Query: 13 LGFDSSTQSLKATVLDSNLNIVASEQLQFDSELPHYKTKDGVYRDPSNNGRIVSPTLMWI 72
LG+D STQ +K +D+ LN+ E + FD +LP + T+ GV+ + + SP L W+
Sbjct: 13 LGWDFSTQQVKVVAVDAELNVFYEESVHFDRDLPEFGTQGGVHVH-KDGLTVTSPVLXWV 71
Query: 73 EAXXXXXXXXXXXXX-XXXVTAVSGSGQQHGSVYWKKGSATILSSLDPKKPLVDQLGDAF 131
+A V A+SG+GQQHGS+YWK G+ L+SL P L QL D F
Sbjct: 72 QALDIILEKXKASGFDFSQVLALSGAGQQHGSIYWKAGAQQALTSLSPDLRLHQQLQDCF 131
Query: 132 STKESPVWMDSSTTAQCREIEKAVGGALELSKLTGSRGYERFTGPQIRKLFQTQPGVYDD 191
S + PVW DSSTTAQCR++E AVGGA LS LTGSR YERFTG QI K++Q P Y
Sbjct: 132 SISDCPVWXDSSTTAQCRQLEAAVGGAQALSCLTGSRAYERFTGNQIAKIYQQNPEAYSH 191
Query: 192 TERISVVSSFMASLLIGAYACIDETDAAGMNLMDIRQRVWSKIVLEATAPSLEEKLGKLA 251
TERIS+VSSF ASL +G+Y+ ID +D +G NL+ I+ +VWS+ L A AP LEEKL
Sbjct: 192 TERISLVSSFAASLFLGSYSPIDYSDGSGXNLLQIQDKVWSQACLGACAPHLEEKLSPPV 251
Query: 252 PAHAVAGCIAPYFVERFHFNKNCLVVQWSGDNPNSLAG 289
P+ +V G I+ Y+V+R+ F C VV ++GDNP SLAG
Sbjct: 252 PSCSVVGAISSYYVQRYGFPPGCKVVAFTGDNPASLAG 289
>pdb|2ITM|A Chain A, Crystal Structure Of The E. Coli Xylulose Kinase Complexed
With Xylulose
pdb|2ITM|B Chain B, Crystal Structure Of The E. Coli Xylulose Kinase Complexed
With Xylulose
pdb|2NLX|A Chain A, Crystal Structure Of The Apo E. Coli Xylulose Kinase
pdb|2NLX|B Chain B, Crystal Structure Of The Apo E. Coli Xylulose Kinase
Length = 484
Score = 52.4 bits (124), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 49/252 (19%), Positives = 104/252 (41%), Gaps = 38/252 (15%)
Query: 11 LFLGFDSSTQSLKATVLDSNLNIVASEQLQFDSELPHYKTKDGVYRDPSNNGRIVSPTLM 70
+++G D T +K +L+ +VA++ + PH + +DP
Sbjct: 1 MYIGIDLGTSGVKVILLNEQGEVVAAQTEKLTVSRPHPLWSE---QDPEQ---------- 47
Query: 71 WIEAXXXXXXXXXXXXXXXXVTAVSGSGQQHGSVYWKKGSATILSSLDPKKPLVDQLGDA 130
W +A V A+ +GQ HG+ LD ++ ++
Sbjct: 48 WWQATDRAMKALGDQHSLQDVKALGIAGQMHGATL-----------LDAQQRVL------ 90
Query: 131 FSTKESPVWMDSSTTAQCREIEKAVGGALELSKLTGSRGYERFTGPQIRKLFQTQPGVYD 190
+ + +W D +C +E V + +TG+ FT P++ + + +P ++
Sbjct: 91 ---RPAILWNDGRCAQECTLLEARVP---QSRVITGNLMMPGFTAPKLLWVQRHEPEIFR 144
Query: 191 DTERISVVSSFMASLLIGAYACIDETDAAGMNLMDIRQRVWSKIVLEATAPSLEEKLGKL 250
+++ + ++ + G +A D +DAAG +D+ +R WS ++L+A S +++ L
Sbjct: 145 QIDKVLLPKDYLRLRMTGEFAS-DMSDAAGTMWLDVAKRDWSDVMLQACDLS-RDQMPAL 202
Query: 251 APAHAVAGCIAP 262
+ G + P
Sbjct: 203 YEGSEITGALLP 214
>pdb|2W40|A Chain A, Crystal Structure Of Plasmodium Falciparum Glycerol Kinase
With Bound Glycerol
pdb|2W40|B Chain B, Crystal Structure Of Plasmodium Falciparum Glycerol Kinase
With Bound Glycerol
pdb|2W40|C Chain C, Crystal Structure Of Plasmodium Falciparum Glycerol Kinase
With Bound Glycerol
pdb|2W40|D Chain D, Crystal Structure Of Plasmodium Falciparum Glycerol Kinase
With Bound Glycerol
Length = 503
Score = 33.5 bits (75), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 48/229 (20%), Positives = 78/229 (34%), Gaps = 35/229 (15%)
Query: 10 SLFLGFDSSTQSLKATVLDSNLNIVASEQLQFDSELPHYKTKDGVY-RDPSNNGRIVSPT 68
++ L D STQS K D LNIV S L + + K G Y DP +
Sbjct: 4 NVILSIDQSTQSTKVFFYDEELNIVHSNNLNHEQKC----LKPGWYEHDP------IEIM 53
Query: 69 LMWIEAXXXXXXXXXXXXXXXXVTAVSGSGQQHGSVYWKKGSATILSSLDPKKPLVDQLG 128
+ + + Q+ + W + + KPL + +
Sbjct: 54 TNLYNLMNEGIKVLKDKYTSVIIKCIGITNQRETVIIWDRITG---------KPLYNAI- 103
Query: 129 DAFSTKESPVWMDSSTTAQCREIEKAVGGALELSKLTGSRGYERFTGPQIRKLFQTQPGV 188
VW+D+ E ++ K TG+ F+ +I L Q P +
Sbjct: 104 ---------VWLDTRVEELVTEFSAKYNNN-DIQKKTGTYFNTYFSAFKILWLIQNNPEI 153
Query: 189 Y----DDTERISVVSSFMASLLIGAYACIDETDAAGMNLMDIRQRVWSK 233
D T I +++++ L D T+A+ LMDI W +
Sbjct: 154 KQKIDDGTAVIGNINTWLIFNLTKGNCYTDVTNASRTLLMDINTLQWDE 202
>pdb|2W41|A Chain A, Crystal Structure Of Plasmodium Falciparum Glycerol Kinase
With Adp
pdb|2W41|B Chain B, Crystal Structure Of Plasmodium Falciparum Glycerol Kinase
With Adp
Length = 507
Score = 33.5 bits (75), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 48/229 (20%), Positives = 78/229 (34%), Gaps = 35/229 (15%)
Query: 10 SLFLGFDSSTQSLKATVLDSNLNIVASEQLQFDSELPHYKTKDGVY-RDPSNNGRIVSPT 68
++ L D STQS K D LNIV S L + + K G Y DP +
Sbjct: 8 NVILSIDQSTQSTKVFFYDEELNIVHSNNLNHEQKC----LKPGWYEHDP------IEIM 57
Query: 69 LMWIEAXXXXXXXXXXXXXXXXVTAVSGSGQQHGSVYWKKGSATILSSLDPKKPLVDQLG 128
+ + + Q+ + W + + KPL + +
Sbjct: 58 TNLYNLMNEGIKVLKDKYTSVIIKCIGITNQRETVIIWDRITG---------KPLYNAI- 107
Query: 129 DAFSTKESPVWMDSSTTAQCREIEKAVGGALELSKLTGSRGYERFTGPQIRKLFQTQPGV 188
VW+D+ E ++ K TG+ F+ +I L Q P +
Sbjct: 108 ---------VWLDTRVEELVTEFSAKYNNN-DIQKKTGTYFNTYFSAFKILWLIQNNPEI 157
Query: 189 Y----DDTERISVVSSFMASLLIGAYACIDETDAAGMNLMDIRQRVWSK 233
D T I +++++ L D T+A+ LMDI W +
Sbjct: 158 KQKIDDGTAVIGNINTWLIFNLTKGNCYTDVTNASRTLLMDINTLQWDE 206
>pdb|3EZW|A Chain A, Crystal Structure Of A Hyperactive Escherichia Coli
Glycerol Kinase Mutant Gly230 --> Asp Obtained Using
Microfluidic Crystallization Devices
pdb|3EZW|B Chain B, Crystal Structure Of A Hyperactive Escherichia Coli
Glycerol Kinase Mutant Gly230 --> Asp Obtained Using
Microfluidic Crystallization Devices
pdb|3EZW|E Chain E, Crystal Structure Of A Hyperactive Escherichia Coli
Glycerol Kinase Mutant Gly230 --> Asp Obtained Using
Microfluidic Crystallization Devices
pdb|3EZW|G Chain G, Crystal Structure Of A Hyperactive Escherichia Coli
Glycerol Kinase Mutant Gly230 --> Asp Obtained Using
Microfluidic Crystallization Devices
pdb|3EZW|C Chain C, Crystal Structure Of A Hyperactive Escherichia Coli
Glycerol Kinase Mutant Gly230 --> Asp Obtained Using
Microfluidic Crystallization Devices
pdb|3EZW|D Chain D, Crystal Structure Of A Hyperactive Escherichia Coli
Glycerol Kinase Mutant Gly230 --> Asp Obtained Using
Microfluidic Crystallization Devices
pdb|3EZW|F Chain F, Crystal Structure Of A Hyperactive Escherichia Coli
Glycerol Kinase Mutant Gly230 --> Asp Obtained Using
Microfluidic Crystallization Devices
pdb|3EZW|H Chain H, Crystal Structure Of A Hyperactive Escherichia Coli
Glycerol Kinase Mutant Gly230 --> Asp Obtained Using
Microfluidic Crystallization Devices
Length = 526
Score = 31.2 bits (69), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 49/234 (20%), Positives = 88/234 (37%), Gaps = 42/234 (17%)
Query: 12 FLGFDSSTQSLKATVLDSNLNIVASEQLQFDSELPHYKTKDG-VYRDPSNNGRIVSPTLM 70
+ D T S +A V+D + NI++ Q +F+ P K G V DP S TL+
Sbjct: 6 IVALDQGTTSSRAVVMDHDANIISVSQREFEQIYP----KPGWVEHDPMEIWATQSSTLV 61
Query: 71 WIEAXXXXXXXXXXXXXXXXVTAVSGSGQQHGSVYWKKGSATILSSLDPKKPLVDQLGDA 130
+ A + A+ + Q+ ++ W+K + KP+ + +
Sbjct: 62 EVLA--------KADISSDQIAAIGITNQRETTIVWEKETG---------KPIYNAI--- 101
Query: 131 FSTKESPVWMDSSTTAQCREIEKAVGGALE--LSKLTGSRGYERFTGPQIRKLFQTQPGV 188
VW T C +++ LE + TG F+G +++ + G
Sbjct: 102 -------VWQCRRTAEICEHLKR---DGLEDYIRSNTGLVIDPYFSGTKVKWILDHVEGS 151
Query: 189 YDDTERISVVSSFMASLLI-----GAYACIDETDAAGMNLMDIRQRVWSKIVLE 237
+ R ++ + + LI G D T+A+ L +I W +LE
Sbjct: 152 RERARRGELLFGTVDTWLIWKMTQGRVHVTDYTNASRTMLFNIHTLDWDDKMLE 205
>pdb|1GLA|G Chain G, Structure Of The Regulatory Complex Of Escherichia Coli
Iiiglc With Glycerol Kinase
pdb|1GLB|G Chain G, Structure Of The Regulatory Complex Of Escherichia Coli
Iiiglc With Glycerol Kinase
pdb|1GLC|G Chain G, Cation Promoted Association (Cpa) Of A Regulatory And
Target Protein Is Controlled By Phosphorylation
pdb|1GLD|G Chain G, Cation Promoted Association (Cpa) Of A Regulatory And
Target Protein Is Controlled By Phosphorylation
pdb|1GLE|G Chain G, Cation Promoted Association (Cpa) Of A Regulatory And
Target Protein Is Controlled By Phosphorylation
pdb|1GLF|O Chain O, Crystal Structures Of Escherichia Coli Glycerol Kinase And
The Mutant A65t In An Inactive Tetramer: Conformational
Changes And Implications For Allosteric Regulation
pdb|1GLF|Y Chain Y, Crystal Structures Of Escherichia Coli Glycerol Kinase And
The Mutant A65t In An Inactive Tetramer: Conformational
Changes And Implications For Allosteric Regulation
pdb|1GLF|Z Chain Z, Crystal Structures Of Escherichia Coli Glycerol Kinase And
The Mutant A65t In An Inactive Tetramer: Conformational
Changes And Implications For Allosteric Regulation
pdb|1GLF|X Chain X, Crystal Structures Of Escherichia Coli Glycerol Kinase And
The Mutant A65t In An Inactive Tetramer: Conformational
Changes And Implications For Allosteric Regulation
pdb|1BOT|O Chain O, Crystal Structure Of The Complex Between Escherichia Coli
Glycerol Kinase And The Allosteric Regulator Fructose
1,6-bisphosphate.
pdb|1BOT|Z Chain Z, Crystal Structure Of The Complex Between Escherichia Coli
Glycerol Kinase And The Allosteric Regulator Fructose
1,6-bisphosphate.
pdb|1BO5|O Chain O, Crystal Structure Of The Complex Between Escherichia Coli
Glycerol Kinase And The Allosteric Regulator Fructose
1,6-bisphosphate.
pdb|1BO5|Z Chain Z, Crystal Structure Of The Complex Between Escherichia Coli
Glycerol Kinase And The Allosteric Regulator Fructose
1,6-bisphosphate
Length = 501
Score = 30.8 bits (68), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 49/234 (20%), Positives = 88/234 (37%), Gaps = 42/234 (17%)
Query: 12 FLGFDSSTQSLKATVLDSNLNIVASEQLQFDSELPHYKTKDG-VYRDPSNNGRIVSPTLM 70
+ D T S +A V+D + NI++ Q +F+ P K G V DP S TL+
Sbjct: 6 IVALDQGTTSSRAVVMDHDANIISVSQREFEQIYP----KPGWVEHDPMEIWATQSSTLV 61
Query: 71 WIEAXXXXXXXXXXXXXXXXVTAVSGSGQQHGSVYWKKGSATILSSLDPKKPLVDQLGDA 130
+ A + A+ + Q+ ++ W+K + KP+ + +
Sbjct: 62 EVLA--------KADISSDQIAAIGITNQRETTIVWEK---------ETGKPIYNAI--- 101
Query: 131 FSTKESPVWMDSSTTAQCREIEKAVGGALE--LSKLTGSRGYERFTGPQIRKLFQTQPGV 188
VW T C +++ LE + TG F+G +++ + G
Sbjct: 102 -------VWQCRRTAEICEHLKR---DGLEDYIRSNTGLVIDPYFSGTKVKWILDHVEGS 151
Query: 189 YDDTERISVVSSFMASLLI-----GAYACIDETDAAGMNLMDIRQRVWSKIVLE 237
+ R ++ + + LI G D T+A+ L +I W +LE
Sbjct: 152 RERARRGELLFGTVDTWLIWKMTQGRVHVTDYTNASRTMLFNIHTLDWDDKMLE 205
>pdb|4EEI|A Chain A, Crystal Structure Of Adenylosuccinate Lyase From
Francisella Tularensis Complexed With Amp And Succinate
pdb|4EEI|B Chain B, Crystal Structure Of Adenylosuccinate Lyase From
Francisella Tularensis Complexed With Amp And Succinate
Length = 438
Score = 30.8 bits (68), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 6/61 (9%)
Query: 136 SPVWMDSSTTAQCREIEKAVGGALELSKLTGSRGYERFTGPQIRKLFQTQPGVYDDTERI 195
S +W D + A+ E+E A+ ALE R + T +IR Q +P D+ E++
Sbjct: 11 SKIWADENKYAKMLEVELAILEALE------DRMVPKGTAAEIRARAQIRPERVDEIEKV 64
Query: 196 S 196
+
Sbjct: 65 T 65
>pdb|3I8B|A Chain A, The Crystal Structure Of Xylulose Kinase From
Bifidobacterium Adolescentis
Length = 515
Score = 30.4 bits (67), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 35/149 (23%), Positives = 57/149 (38%), Gaps = 41/149 (27%)
Query: 10 SLFLGFDSSTQSLKATVLDSNLNIVASEQLQFDSELPHYKTKDGVYRDPSNNGRIVSPTL 69
+L G D+STQS K V D+ E ++F G + P NG V P+
Sbjct: 5 TLVAGVDTSTQSCKVRVTDAETG----ELVRF-----------GQAKHP--NGTSVDPSY 47
Query: 70 MWIEAXXXXXXXXXXXXXXXXVTAVSGSGQQHGSVYWKKGSATILSSLDPKKPLVDQLGD 129
W V+A++ GQQHG V ++D G+
Sbjct: 48 WW----SAFQEAAEQAGGLDDVSALAVGGQQHGXV------------------ILDNQGN 85
Query: 130 AFSTKESPVWMDSSTTAQCREIEKAVGGA 158
+++ +W D+S+ Q + + +G A
Sbjct: 86 VI--RDAXLWNDTSSAPQAAALIEKLGAA 112
>pdb|1BWF|Y Chain Y, Escherichia Coli Glycerol Kinase Mutant With Bound Atp
Analog Showing Substantial Domain Motion
pdb|1BWF|O Chain O, Escherichia Coli Glycerol Kinase Mutant With Bound Atp
Analog Showing Substantial Domain Motion
pdb|1GLJ|Y Chain Y, Escherichia Coli Glycerol Kinase Mutant With Bound Atp
Analog Showing Substantial Domain Motion
pdb|1GLJ|O Chain O, Escherichia Coli Glycerol Kinase Mutant With Bound Atp
Analog Showing Substantial Domain Motion
pdb|1GLL|Y Chain Y, Escherichia Coli Glycerol Kinase Mutant With Bound Atp
Analog Showing Substantial Domain Motion
pdb|1GLL|O Chain O, Escherichia Coli Glycerol Kinase Mutant With Bound Atp
Analog Showing Substantial Domain Motion
Length = 501
Score = 30.0 bits (66), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 49/234 (20%), Positives = 88/234 (37%), Gaps = 42/234 (17%)
Query: 12 FLGFDSSTQSLKATVLDSNLNIVASEQLQFDSELPHYKTKDG-VYRDPSNNGRIVSPTLM 70
+ D T S +A V+D + NI++ Q +F+ P K G V DP S TL+
Sbjct: 6 IVALDQGTTSSRAVVMDHDANIISVSQREFEQIYP----KPGWVEHDPMEIWATQSWTLV 61
Query: 71 WIEAXXXXXXXXXXXXXXXXVTAVSGSGQQHGSVYWKKGSATILSSLDPKKPLVDQLGDA 130
+ A + A+ + Q+ ++ W+K + KP+ + +
Sbjct: 62 EVLA--------KADISSDQIAAIGITNQRETTIVWEK---------ETGKPIYNAI--- 101
Query: 131 FSTKESPVWMDSSTTAQCREIEKAVGGALE--LSKLTGSRGYERFTGPQIRKLFQTQPGV 188
VW T C +++ LE + TG F+G +++ + G
Sbjct: 102 -------VWQCRRTAEICEHLKR---DGLEDYIRSNTGLVIDPYFSGTKVKWILDHVEGS 151
Query: 189 YDDTERISVVSSFMASLLI-----GAYACIDETDAAGMNLMDIRQRVWSKIVLE 237
+ R ++ + + LI G D T+A+ L +I W +LE
Sbjct: 152 RERARRGELLFGTVDTWLIWKMTQGRVHVTDYTNASRTMLFNIHTLDWDDKMLE 205
>pdb|1BU6|O Chain O, Crystal Structures Of Escherichia Coli Glycerol Kinase And
The Mutant A65t In An Inactive Tetramer: Conformational
Changes And Implications For Allosteric Regulation
pdb|1BU6|Y Chain Y, Crystal Structures Of Escherichia Coli Glycerol Kinase And
The Mutant A65t In An Inactive Tetramer: Conformational
Changes And Implications For Allosteric Regulation
pdb|1BU6|Z Chain Z, Crystal Structures Of Escherichia Coli Glycerol Kinase And
The Mutant A65t In An Inactive Tetramer: Conformational
Changes And Implications For Allosteric Regulation
pdb|1BU6|X Chain X, Crystal Structures Of Escherichia Coli Glycerol Kinase And
The Mutant A65t In An Inactive Tetramer: Conformational
Changes And Implications For Allosteric Regulation
Length = 501
Score = 30.0 bits (66), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 48/234 (20%), Positives = 87/234 (37%), Gaps = 42/234 (17%)
Query: 12 FLGFDSSTQSLKATVLDSNLNIVASEQLQFDSELPHYKTKDG-VYRDPSNNGRIVSPTLM 70
+ D T S +A V+D + NI++ Q +F+ P K G V DP S TL+
Sbjct: 6 IVALDQGTTSSRAVVMDHDANIISVSQREFEQIYP----KPGWVEHDPMEIWATQSSTLV 61
Query: 71 WIEAXXXXXXXXXXXXXXXXVTAVSGSGQQHGSVYWKKGSATILSSLDPKKPLVDQLGDA 130
+ + A+ + Q+ ++ W+K + KP+ + +
Sbjct: 62 EV--------LTKADISSDQIAAIGITNQRETTIVWEK---------ETGKPIYNAI--- 101
Query: 131 FSTKESPVWMDSSTTAQCREIEKAVGGALE--LSKLTGSRGYERFTGPQIRKLFQTQPGV 188
VW T C +++ LE + TG F+G +++ + G
Sbjct: 102 -------VWQCRRTAEICEHLKR---DGLEDYIRSNTGLVIDPYFSGTKVKWILDHVEGS 151
Query: 189 YDDTERISVVSSFMASLLI-----GAYACIDETDAAGMNLMDIRQRVWSKIVLE 237
+ R ++ + + LI G D T+A+ L +I W +LE
Sbjct: 152 RERARRGELLFGTVDTWLIWKMTQGRVHVTDYTNASRTMLFNIHTLDWDDKMLE 205
>pdb|2VWK|A Chain A, Uracil Recognition In Archaeal Dna Polymerases Captured By
X-Ray Crystallography. V93q Polymerase Variant
Length = 773
Score = 29.3 bits (64), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 19/35 (54%)
Query: 210 YACIDETDAAGMNLMDIRQRVWSKIVLEATAPSLE 244
YA IDE D ++I +R WS+I E A LE
Sbjct: 594 YAVIDEEDKITTRGLEIVRRDWSEIAKETQARVLE 628
>pdb|2VWJ|A Chain A, Uracil Recognition In Archaeal Dna Polymerases Captured By
X-Ray Crystallography
Length = 773
Score = 29.3 bits (64), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 19/35 (54%)
Query: 210 YACIDETDAAGMNLMDIRQRVWSKIVLEATAPSLE 244
YA IDE D ++I +R WS+I E A LE
Sbjct: 594 YAVIDEEDKITTRGLEIVRRDWSEIAKETQARVLE 628
>pdb|2XHB|A Chain A, Crystal Structure Of Dna Polymerase From Thermococcus
Gorgonarius In Complex With Hypoxanthine-Containing Dna
Length = 773
Score = 29.3 bits (64), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 19/35 (54%)
Query: 210 YACIDETDAAGMNLMDIRQRVWSKIVLEATAPSLE 244
YA IDE D ++I +R WS+I E A LE
Sbjct: 594 YAVIDEEDKITTRGLEIVRRDWSEIAKETQARVLE 628
>pdb|1TGO|A Chain A, Thermostable B Type Dna Polymerase From Thermococcus
Gorgonarius
Length = 773
Score = 29.3 bits (64), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 19/35 (54%)
Query: 210 YACIDETDAAGMNLMDIRQRVWSKIVLEATAPSLE 244
YA IDE D ++I +R WS+I E A LE
Sbjct: 594 YAVIDEEDKITTRGLEIVRRDWSEIAKETQARVLE 628
>pdb|1QQC|A Chain A, Crystal Structure Of An Archaebacterial Dna Polymerase
D.Tok
Length = 773
Score = 29.3 bits (64), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 19/35 (54%)
Query: 210 YACIDETDAAGMNLMDIRQRVWSKIVLEATAPSLE 244
YA IDE D ++I +R WS+I E A LE
Sbjct: 594 YAVIDEEDKITTRGLEIVRRDWSEIAKETQARVLE 628
>pdb|1D5A|A Chain A, Crystal Structure Of An Archaebacterial Dna Polymerase
D.Tok. Deposition Of Second Native Structure At 2.4
Angstrom
Length = 733
Score = 29.3 bits (64), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 19/35 (54%)
Query: 210 YACIDETDAAGMNLMDIRQRVWSKIVLEATAPSLE 244
YA IDE D ++I +R WS+I E A LE
Sbjct: 594 YAVIDEEDKITTRGLEIVRRDWSEIAKETQARVLE 628
>pdb|2J0F|A Chain A, Structural Basis For Non-Competitive Product Inhibition In
Human Thymidine Phosphorylase: Implication For Drug
Design
pdb|2J0F|B Chain B, Structural Basis For Non-Competitive Product Inhibition In
Human Thymidine Phosphorylase: Implication For Drug
Design
pdb|2J0F|C Chain C, Structural Basis For Non-Competitive Product Inhibition In
Human Thymidine Phosphorylase: Implication For Drug
Design
pdb|2J0F|D Chain D, Structural Basis For Non-Competitive Product Inhibition In
Human Thymidine Phosphorylase: Implication For Drug
Design
Length = 482
Score = 28.1 bits (61), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 27/49 (55%), Gaps = 2/49 (4%)
Query: 111 ATILSSLDPKKPLVDQLGDAFSTKESPVWMDSSTTAQCREIEKAVGGAL 159
A L+++D KPL +G A +E+ + MD + R++ +GGAL
Sbjct: 267 AAALTAMD--KPLGRCVGHALEVEEALLCMDGAGPPDLRDLVTTLGGAL 313
>pdb|1UOU|A Chain A, Crystal Structure Of Human Thymidine Phosphorylase In
Complex With A Small Molecule Inhibitor
Length = 474
Score = 28.1 bits (61), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 27/49 (55%), Gaps = 2/49 (4%)
Query: 111 ATILSSLDPKKPLVDQLGDAFSTKESPVWMDSSTTAQCREIEKAVGGAL 159
A L+++D KPL +G A +E+ + MD + R++ +GGAL
Sbjct: 261 AAALTAMD--KPLGRCVGHALEVEEALLCMDGAGPPDLRDLVTTLGGAL 307
>pdb|2WK5|A Chain A, Structural Features Of Native Human Thymidine
Phosphorylase And In Complex With 5-Iodouracil
pdb|2WK5|B Chain B, Structural Features Of Native Human Thymidine
Phosphorylase And In Complex With 5-Iodouracil
pdb|2WK5|C Chain C, Structural Features Of Native Human Thymidine
Phosphorylase And In Complex With 5-Iodouracil
pdb|2WK5|D Chain D, Structural Features Of Native Human Thymidine
Phosphorylase And In Complex With 5-Iodouracil
pdb|2WK6|A Chain A, Structural Features Of Native Human Thymidine
Phosphorylase And In Complex With 5-Iodouracil
pdb|2WK6|B Chain B, Structural Features Of Native Human Thymidine
Phosphorylase And In Complex With 5-Iodouracil
Length = 482
Score = 28.1 bits (61), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 27/49 (55%), Gaps = 2/49 (4%)
Query: 111 ATILSSLDPKKPLVDQLGDAFSTKESPVWMDSSTTAQCREIEKAVGGAL 159
A L+++D KPL +G A +E+ + MD + R++ +GGAL
Sbjct: 267 AAALTAMD--KPLGRCVGHALEVEEALLCMDGAGPPDLRDLVTTLGGAL 313
>pdb|2BG9|C Chain C, Refined Structure Of The Nicotinic Acetylcholine Receptor
At 4a Resolution
Length = 369
Score = 27.3 bits (59), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 29/66 (43%), Gaps = 8/66 (12%)
Query: 5 SLPKDSLFLGFDSSTQSLKATVLDSNLNIVASEQL--------QFDSELPHYKTKDGVYR 56
S P + L+ FD SLK T L+ N N ++ + + + E+ H K +Y
Sbjct: 129 SCPINVLYFPFDWQNCSLKFTALNYNANEISMDLIIDPEAFTENGEWEIIHKPAKKNIYG 188
Query: 57 DPSNNG 62
D NG
Sbjct: 189 DKFPNG 194
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.131 0.385
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,259,934
Number of Sequences: 62578
Number of extensions: 304750
Number of successful extensions: 573
Number of sequences better than 100.0: 22
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 550
Number of HSP's gapped (non-prelim): 28
length of query: 289
length of database: 14,973,337
effective HSP length: 98
effective length of query: 191
effective length of database: 8,840,693
effective search space: 1688572363
effective search space used: 1688572363
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (24.3 bits)