Query 022949
Match_columns 289
No_of_seqs 185 out of 1395
Neff 8.0
Searched_HMMs 46136
Date Fri Mar 29 07:20:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022949.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/022949hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02669 xylulokinase 100.0 2.2E-58 4.8E-63 451.2 26.6 286 3-289 1-288 (556)
2 PF00370 FGGY_N: FGGY family o 100.0 1.7E-58 3.6E-63 409.6 18.2 243 11-289 1-245 (245)
3 PRK10331 L-fuculokinase; Provi 100.0 2.7E-55 5.8E-60 423.1 22.9 244 10-289 2-247 (470)
4 COG1070 XylB Sugar (pentulose 100.0 5.7E-55 1.2E-59 423.5 21.8 247 7-289 1-251 (502)
5 TIGR02628 fuculo_kin_coli L-fu 100.0 1.8E-54 4E-59 416.7 23.1 244 10-289 1-246 (465)
6 TIGR01314 gntK_FGGY gluconate 100.0 1.2E-53 2.5E-58 415.0 23.3 242 11-289 1-244 (505)
7 PRK15027 xylulokinase; Provisi 100.0 2E-53 4.3E-58 411.4 21.7 240 11-289 1-240 (484)
8 PRK10939 autoinducer-2 (AI-2) 100.0 8.2E-52 1.8E-56 403.3 22.7 243 10-289 3-250 (520)
9 PTZ00294 glycerol kinase-like 100.0 1.2E-51 2.7E-56 400.7 21.3 241 11-289 3-254 (504)
10 PRK00047 glpK glycerol kinase; 100.0 1.2E-51 2.6E-56 400.3 21.0 243 7-289 2-253 (498)
11 PLN02295 glycerol kinase 100.0 1.1E-51 2.3E-56 401.8 19.7 239 11-289 1-256 (512)
12 TIGR01311 glycerol_kin glycero 100.0 2.3E-50 5E-55 390.9 21.1 239 10-289 1-248 (493)
13 TIGR01315 5C_CHO_kinase FGGY-f 100.0 1.2E-50 2.5E-55 396.7 19.1 249 11-289 1-262 (541)
14 PRK04123 ribulokinase; Provisi 100.0 6.6E-50 1.4E-54 392.2 22.2 256 9-289 2-281 (548)
15 TIGR01234 L-ribulokinase L-rib 100.0 5.5E-50 1.2E-54 391.7 21.0 258 10-289 1-277 (536)
16 TIGR01312 XylB D-xylulose kina 100.0 3.8E-49 8.3E-54 381.1 21.7 241 13-289 1-243 (481)
17 COG0554 GlpK Glycerol kinase [ 100.0 1.1E-48 2.5E-53 362.4 15.6 242 9-289 4-252 (499)
18 TIGR02627 rhamnulo_kin rhamnul 100.0 5.9E-48 1.3E-52 370.5 19.2 233 13-289 1-238 (454)
19 COG1069 AraB Ribulose kinase [ 100.0 2.4E-41 5.1E-46 317.6 18.3 252 8-289 1-262 (544)
20 PRK10640 rhaB rhamnulokinase; 100.0 1.4E-40 3.1E-45 320.5 20.2 195 64-289 31-226 (471)
21 KOG2531 Sugar (pentulose and h 100.0 9.6E-39 2.1E-43 292.6 17.0 282 7-289 6-288 (545)
22 KOG2517 Ribulose kinase and re 100.0 7.2E-37 1.6E-41 289.3 14.9 245 9-289 5-262 (516)
23 TIGR00241 CoA_E_activ CoA-subs 98.7 5.8E-08 1.3E-12 86.3 7.4 68 11-106 1-70 (248)
24 COG1940 NagC Transcriptional r 98.6 1.8E-07 4E-12 85.7 9.3 122 7-154 3-128 (314)
25 PRK13311 N-acetyl-D-glucosamin 98.6 2.3E-07 4.9E-12 82.8 8.7 115 11-154 1-118 (256)
26 PRK09698 D-allose kinase; Prov 98.5 5E-07 1.1E-11 82.4 10.4 118 7-152 1-124 (302)
27 PRK09557 fructokinase; Reviewe 98.4 8.6E-07 1.9E-11 80.9 9.1 114 11-153 1-117 (301)
28 PRK13310 N-acetyl-D-glucosamin 98.4 7.9E-07 1.7E-11 81.1 8.5 114 11-153 1-117 (303)
29 TIGR00744 ROK_glcA_fam ROK fam 98.3 1.8E-06 3.8E-11 79.3 8.8 113 13-153 1-118 (318)
30 PF00480 ROK: ROK family; Int 98.2 3.1E-06 6.8E-11 71.0 5.8 107 14-151 1-110 (179)
31 PRK05082 N-acetylmannosamine k 98.1 1E-05 2.2E-10 73.4 8.4 110 12-152 3-116 (291)
32 smart00732 YqgFc Likely ribonu 98.0 8.1E-06 1.7E-10 61.7 5.0 96 11-146 2-97 (99)
33 PRK12408 glucokinase; Provisio 98.0 4E-06 8.7E-11 77.8 3.9 108 10-152 16-129 (336)
34 PRK00292 glk glucokinase; Prov 98.0 1.1E-05 2.5E-10 74.1 5.5 108 10-151 2-110 (316)
35 PRK14101 bifunctional glucokin 97.9 8E-06 1.7E-10 82.1 3.4 107 9-149 17-123 (638)
36 TIGR03192 benz_CoA_bzdQ benzoy 97.5 0.00041 8.9E-09 62.8 8.6 68 10-104 32-101 (293)
37 TIGR00749 glk glucokinase, pro 97.5 0.0002 4.4E-09 65.8 6.2 106 13-149 1-107 (316)
38 TIGR03286 methan_mark_15 putat 97.5 0.00045 9.8E-09 65.0 8.3 69 8-104 142-212 (404)
39 TIGR02261 benz_CoA_red_D benzo 97.2 0.0018 4E-08 57.8 8.8 70 11-103 2-74 (262)
40 PRK13318 pantothenate kinase; 97.1 0.0011 2.4E-08 59.2 6.3 63 12-98 2-64 (258)
41 PF01869 BcrAD_BadFG: BadF/Bad 97.1 0.00064 1.4E-08 61.0 4.7 63 13-94 1-65 (271)
42 PRK13321 pantothenate kinase; 97.0 0.0012 2.7E-08 58.9 5.8 63 12-98 2-64 (256)
43 COG2971 Predicted N-acetylgluc 96.8 0.0037 8.1E-08 56.5 7.0 34 7-40 2-35 (301)
44 COG1924 Activator of 2-hydroxy 96.7 0.0054 1.2E-07 56.9 7.5 71 8-104 133-203 (396)
45 PF05378 Hydant_A_N: Hydantoin 96.6 0.0076 1.6E-07 50.8 7.0 74 13-111 2-77 (176)
46 TIGR02259 benz_CoA_red_A benzo 96.5 0.0034 7.3E-08 59.0 4.6 33 10-42 2-34 (432)
47 PF14574 DUF4445: Domain of un 96.0 0.011 2.5E-07 56.2 5.4 86 10-99 1-92 (412)
48 PRK15080 ethanolamine utilizat 95.8 0.056 1.2E-06 48.5 8.8 35 7-41 21-55 (267)
49 PF00349 Hexokinase_1: Hexokin 95.4 0.033 7.3E-07 48.1 5.8 72 10-97 63-138 (206)
50 smart00842 FtsA Cell division 95.2 0.16 3.4E-06 43.0 9.1 70 12-98 1-76 (187)
51 KOG1794 N-Acetylglucosamine ki 95.0 0.13 2.8E-06 46.4 8.1 71 9-98 2-75 (336)
52 PRK09472 ftsA cell division pr 94.8 0.23 5E-06 47.6 10.1 76 7-99 5-86 (420)
53 PTZ00288 glucokinase 1; Provis 94.4 0.24 5.2E-06 47.2 9.1 72 7-98 23-100 (405)
54 TIGR01174 ftsA cell division p 94.3 0.3 6.5E-06 45.9 9.5 72 11-99 1-78 (371)
55 TIGR03123 one_C_unchar_1 proba 93.7 0.17 3.6E-06 46.7 6.1 31 13-43 1-31 (318)
56 TIGR02707 butyr_kinase butyrat 93.5 0.23 5E-06 46.5 6.9 29 12-40 2-30 (351)
57 PF13941 MutL: MutL protein 93.0 0.4 8.6E-06 46.4 7.8 51 12-85 2-55 (457)
58 TIGR02529 EutJ ethanolamine ut 93.0 0.4 8.6E-06 42.3 7.3 27 14-40 1-27 (239)
59 PRK13317 pantothenate kinase; 92.6 0.16 3.4E-06 46.0 4.3 27 10-36 2-28 (277)
60 PRK13324 pantothenate kinase; 91.8 0.65 1.4E-05 41.6 7.1 64 12-98 2-65 (258)
61 PLN02914 hexokinase 91.5 0.45 9.7E-06 46.5 6.2 59 10-84 95-156 (490)
62 PLN02596 hexokinase-like 90.6 0.71 1.5E-05 45.1 6.6 60 9-84 95-157 (490)
63 COG3894 Uncharacterized metal- 90.5 0.35 7.5E-06 46.8 4.3 34 6-39 160-194 (614)
64 COG3734 DgoK 2-keto-3-deoxy-ga 90.5 0.43 9.3E-06 43.0 4.7 33 7-39 2-34 (306)
65 PLN02405 hexokinase 90.4 0.72 1.6E-05 45.1 6.6 60 9-84 94-156 (497)
66 TIGR01175 pilM type IV pilus a 89.9 1.4 3.1E-05 40.7 7.9 34 9-42 2-38 (348)
67 COG4820 EutJ Ethanolamine util 89.6 0.6 1.3E-05 40.1 4.6 32 8-39 27-58 (277)
68 PLN02362 hexokinase 89.4 0.81 1.8E-05 44.9 6.0 60 9-84 94-156 (509)
69 PF11104 PilM_2: Type IV pilus 88.8 1.5 3.2E-05 40.7 7.1 29 14-42 1-32 (340)
70 PTZ00107 hexokinase; Provision 88.3 0.91 2E-05 44.1 5.5 68 9-84 73-142 (464)
71 PF02685 Glucokinase: Glucokin 88.3 0.98 2.1E-05 41.7 5.5 104 13-148 1-107 (316)
72 PRK13326 pantothenate kinase; 88.0 1.2 2.7E-05 39.9 5.8 26 10-36 6-31 (262)
73 COG4972 PilM Tfp pilus assembl 87.8 1.4 3E-05 40.6 6.0 31 5-35 3-35 (354)
74 PRK13320 pantothenate kinase; 87.8 2.3 5E-05 37.7 7.4 24 11-35 3-26 (244)
75 COG4020 Uncharacterized protei 87.8 2.4 5.3E-05 37.6 7.2 25 9-33 2-26 (332)
76 TIGR00671 baf pantothenate kin 87.8 1.4 3E-05 39.1 5.9 27 13-40 2-28 (243)
77 COG0849 ftsA Cell division ATP 87.5 4.5 9.7E-05 38.8 9.5 58 11-84 7-68 (418)
78 PRK00976 hypothetical protein; 86.9 1.8 3.9E-05 40.0 6.3 19 10-28 1-19 (326)
79 TIGR00555 panK_eukar pantothen 85.0 1.4 3E-05 39.9 4.5 25 12-36 2-26 (279)
80 COG0145 HyuA N-methylhydantoin 84.8 3.8 8.2E-05 41.7 7.9 32 10-41 2-33 (674)
81 PLN02666 5-oxoprolinase 84.3 2.8 6.1E-05 45.7 7.1 84 7-110 6-96 (1275)
82 PRK03011 butyrate kinase; Prov 83.8 2.6 5.7E-05 39.6 6.0 31 11-42 3-33 (358)
83 PRK11031 guanosine pentaphosph 83.8 4.1 8.9E-05 40.0 7.6 26 7-32 3-29 (496)
84 PF07318 DUF1464: Protein of u 80.7 1.4 3E-05 40.9 2.9 29 14-42 1-29 (343)
85 PRK10854 exopolyphosphatase; P 79.8 7.3 0.00016 38.4 7.8 33 8-40 9-44 (513)
86 PRK11678 putative chaperone; P 79.5 1.5 3.3E-05 42.4 2.8 17 12-28 2-18 (450)
87 PTZ00009 heat shock 70 kDa pro 78.1 2.1 4.6E-05 43.4 3.5 23 7-29 1-23 (653)
88 COG0443 DnaK Molecular chapero 78.0 2.8 6E-05 42.0 4.2 23 9-31 4-26 (579)
89 COG5026 Hexokinase [Carbohydra 77.9 2.3 4.9E-05 40.6 3.3 25 7-31 72-96 (466)
90 PF00871 Acetate_kinase: Aceto 77.6 9.1 0.0002 36.4 7.4 29 12-40 2-31 (388)
91 COG1521 Pantothenate kinase ty 77.0 5.7 0.00012 35.4 5.5 29 12-41 2-30 (251)
92 PRK00290 dnaK molecular chaper 76.0 2.2 4.9E-05 43.0 3.0 19 11-29 3-21 (627)
93 TIGR03706 exo_poly_only exopol 75.7 9.4 0.0002 34.8 6.8 19 12-30 2-20 (300)
94 COG1548 Predicted transcriptio 75.7 7.4 0.00016 34.8 5.7 25 9-35 2-26 (330)
95 TIGR03281 methan_mark_12 putat 74.8 2.4 5.2E-05 38.8 2.5 23 12-34 1-23 (326)
96 PRK05183 hscA chaperone protei 74.7 2.8 6E-05 42.3 3.3 21 9-29 18-38 (616)
97 PF05035 DGOK: 2-keto-3-deoxy- 74.6 3.2 6.9E-05 37.8 3.3 27 16-42 1-27 (287)
98 PF14450 FtsA: Cell division p 73.0 3.9 8.3E-05 31.9 3.0 18 12-29 1-18 (120)
99 TIGR02350 prok_dnaK chaperone 72.9 2.9 6.3E-05 41.9 2.9 19 11-29 1-19 (595)
100 PTZ00186 heat shock 70 kDa pre 72.4 3.8 8.1E-05 41.7 3.6 21 10-30 27-47 (657)
101 PF00012 HSP70: Hsp70 protein; 72.4 2.7 5.8E-05 41.9 2.5 18 12-29 1-18 (602)
102 PF01548 DEDD_Tnp_IS110: Trans 72.4 8.1 0.00018 30.7 4.9 29 12-40 1-29 (144)
103 CHL00094 dnaK heat shock prote 71.9 3.2 6.9E-05 41.9 2.9 21 11-32 3-23 (621)
104 PRK12440 acetate kinase; Revie 71.5 6.8 0.00015 37.3 4.8 33 7-39 1-34 (397)
105 PRK13410 molecular chaperone D 70.5 4 8.7E-05 41.6 3.3 22 11-33 3-24 (668)
106 COG0248 GppA Exopolyphosphatas 70.2 7 0.00015 38.4 4.7 22 9-30 2-23 (492)
107 PTZ00400 DnaK-type molecular c 70.1 4 8.6E-05 41.6 3.2 19 11-29 42-60 (663)
108 PF04312 DUF460: Protein of un 69.9 10 0.00022 30.6 4.7 32 8-40 30-61 (138)
109 PRK13411 molecular chaperone D 69.6 4.1 8.8E-05 41.4 3.1 21 11-32 3-23 (653)
110 PRK07058 acetate kinase; Provi 69.3 7.7 0.00017 36.9 4.6 33 7-39 1-36 (396)
111 PRK13331 pantothenate kinase; 68.2 8.6 0.00019 34.3 4.5 26 9-35 6-31 (251)
112 PRK13322 pantothenate kinase; 67.4 5.3 0.00011 35.4 3.0 23 12-34 2-24 (246)
113 TIGR01865 cas_Csn1 CRISPR-asso 67.4 4.4 9.5E-05 42.2 2.9 23 10-32 1-23 (805)
114 TIGR00329 gcp_kae1 metallohydr 66.7 9.5 0.00021 34.9 4.7 75 13-98 1-77 (305)
115 PRK09604 UGMP family protein; 66.6 20 0.00044 33.2 6.8 28 11-38 2-29 (332)
116 PTZ00340 O-sialoglycoprotein e 66.0 23 0.00049 33.2 7.0 79 11-103 2-82 (345)
117 TIGR00904 mreB cell shape dete 65.7 5.2 0.00011 36.8 2.8 21 13-34 5-25 (333)
118 KOG1369 Hexokinase [Carbohydra 64.6 18 0.0004 35.2 6.2 60 8-83 84-145 (474)
119 PLN03184 chloroplast Hsp70; Pr 64.2 6.3 0.00014 40.2 3.3 19 11-29 40-58 (673)
120 PF14639 YqgF: Holliday-juncti 63.9 31 0.00067 28.2 6.7 30 10-39 5-38 (150)
121 PRK01433 hscA chaperone protei 63.3 7.5 0.00016 39.1 3.5 19 10-28 19-37 (595)
122 TIGR01319 glmL_fam conserved h 63.2 19 0.00042 34.9 6.1 29 15-43 1-30 (463)
123 COG2441 Predicted butyrate kin 62.6 12 0.00027 33.8 4.3 49 13-81 1-50 (374)
124 COG0837 Glk Glucokinase [Carbo 61.8 59 0.0013 29.8 8.6 20 10-30 7-26 (320)
125 TIGR01991 HscA Fe-S protein as 61.3 5.9 0.00013 39.8 2.4 18 12-29 1-18 (599)
126 PRK13928 rod shape-determining 59.7 6.5 0.00014 36.3 2.2 15 13-27 6-20 (336)
127 PF03309 Pan_kinase: Type III 59.3 8.8 0.00019 32.9 2.9 20 12-31 1-20 (206)
128 PRK13328 pantothenate kinase; 58.7 11 0.00024 33.6 3.5 24 12-35 3-26 (255)
129 PRK13930 rod shape-determining 57.0 8.9 0.00019 35.1 2.7 15 13-27 11-25 (335)
130 PRK00109 Holliday junction res 56.4 17 0.00038 29.1 3.9 24 10-33 4-27 (138)
131 COG2183 Tex Transcriptional ac 56.1 37 0.0008 35.1 6.9 31 9-39 329-360 (780)
132 TIGR03723 bact_gcp putative gl 54.9 24 0.00052 32.4 5.1 28 12-39 1-28 (314)
133 TIGR03725 bact_YeaZ universal 51.4 41 0.00088 28.6 5.7 26 12-38 1-26 (202)
134 PRK12397 propionate kinase; Re 50.8 25 0.00053 33.6 4.5 28 12-39 5-33 (404)
135 PF04848 Pox_A22: Poxvirus A22 50.7 35 0.00075 27.7 4.8 25 11-35 2-26 (143)
136 PF03652 UPF0081: Uncharacteri 50.5 17 0.00038 29.0 3.0 23 11-33 2-24 (135)
137 PRK13929 rod-share determining 50.4 13 0.00028 34.4 2.6 13 12-24 6-18 (335)
138 PRK12379 propionate/acetate ki 49.8 27 0.00058 33.3 4.6 31 9-39 4-35 (396)
139 PRK00039 ruvC Holliday junctio 47.7 52 0.0011 27.3 5.5 22 11-32 3-24 (164)
140 COG0816 Predicted endonuclease 47.6 25 0.00053 28.5 3.5 22 10-31 2-23 (141)
141 PRK09605 bifunctional UGMP fam 47.2 50 0.0011 32.5 6.4 30 11-40 2-31 (535)
142 TIGR03722 arch_KAE1 universal 47.0 30 0.00064 31.8 4.4 74 13-98 1-74 (322)
143 cd00529 RuvC_resolvase Hollida 46.6 75 0.0016 25.8 6.3 21 12-32 2-22 (154)
144 TIGR00016 ackA acetate kinase. 45.4 35 0.00076 32.6 4.7 29 11-39 5-35 (404)
145 PF02075 RuvC: Crossover junct 45.2 49 0.0011 26.8 5.0 22 12-33 1-22 (149)
146 KOG1386 Nucleoside phosphatase 44.8 50 0.0011 32.2 5.6 66 8-84 7-76 (501)
147 PF06723 MreB_Mbl: MreB/Mbl pr 44.5 13 0.00029 34.4 1.7 14 12-25 3-16 (326)
148 COG1214 Inactive homolog of me 43.2 54 0.0012 28.5 5.2 31 11-41 2-33 (220)
149 COG0533 QRI7 Metal-dependent p 42.8 59 0.0013 30.3 5.6 81 11-104 2-84 (342)
150 PRK13927 rod shape-determining 41.3 19 0.00042 33.0 2.3 15 12-26 7-21 (334)
151 PRK13329 pantothenate kinase; 41.1 20 0.00043 31.8 2.2 18 12-29 3-20 (249)
152 PRK07157 acetate kinase; Provi 40.3 45 0.00097 31.8 4.5 28 12-39 5-33 (400)
153 COG2012 RPB5 DNA-directed RNA 39.1 55 0.0012 23.7 3.7 33 233-274 27-59 (80)
154 TIGR03192 benz_CoA_bzdQ benzoy 39.1 33 0.00072 31.3 3.4 23 13-35 128-150 (293)
155 COG3513 Predicted CRISPR-assoc 38.4 28 0.00061 36.1 2.9 25 7-31 1-25 (1088)
156 TIGR03123 one_C_unchar_1 proba 37.2 35 0.00076 31.5 3.3 26 11-37 129-154 (318)
157 TIGR02261 benz_CoA_red_D benzo 36.7 39 0.00085 30.3 3.4 22 13-34 100-121 (262)
158 PRK13325 bifunctional biotin-- 35.4 48 0.001 33.4 4.1 27 8-35 336-362 (592)
159 TIGR00228 ruvC crossover junct 33.4 1.2E+02 0.0026 25.0 5.4 22 12-33 1-22 (156)
160 PRK09570 rpoH DNA-directed RNA 33.0 71 0.0015 23.2 3.6 35 233-276 24-58 (79)
161 COG4012 Uncharacterized protei 32.4 68 0.0015 29.0 4.1 26 11-37 228-253 (342)
162 COG0282 ackA Acetate kinase [E 32.0 38 0.00083 32.1 2.6 27 11-37 2-29 (396)
163 TIGR00250 RNAse_H_YqgF RNAse H 31.8 42 0.00091 26.6 2.5 21 13-33 1-21 (130)
164 PF13290 CHB_HEX_C_1: Chitobia 31.6 46 0.001 23.1 2.4 20 13-33 43-62 (67)
165 KOG2707 Predicted metalloprote 31.1 67 0.0014 30.2 3.9 79 12-105 34-117 (405)
166 PF01191 RNA_pol_Rpb5_C: RNA p 30.5 74 0.0016 22.8 3.3 36 232-276 20-55 (74)
167 PF13756 Stimulus_sens_1: Stim 29.7 58 0.0013 25.1 2.9 24 18-41 15-38 (112)
168 KOG1385 Nucleoside phosphatase 29.6 61 0.0013 31.1 3.5 24 8-31 65-88 (453)
169 PF02541 Ppx-GppA: Ppx/GppA ph 28.3 82 0.0018 28.2 4.1 34 8-42 110-143 (285)
170 PF06277 EutA: Ethanolamine ut 28.2 46 0.001 32.4 2.5 18 11-28 4-21 (473)
171 PRK08557 hypothetical protein; 27.4 48 0.001 31.9 2.5 60 133-196 316-380 (417)
172 PRK10719 eutA reactivating fac 27.2 43 0.00093 32.7 2.1 14 13-26 9-22 (475)
173 PRK00180 acetate kinase A/prop 26.9 85 0.0019 30.0 4.1 28 12-39 3-31 (402)
174 PF08735 DUF1786: Putative pyr 26.9 1.4E+02 0.0029 26.8 5.0 31 6-37 163-193 (254)
175 PF07736 CM_1: Chorismate muta 26.2 1E+02 0.0022 24.2 3.6 31 69-99 16-48 (118)
176 KOG0101 Molecular chaperones H 25.9 71 0.0015 32.3 3.4 28 8-35 5-33 (620)
177 PF11141 DUF2914: Protein of u 25.5 1.1E+02 0.0024 21.1 3.5 19 22-40 46-64 (66)
178 PRK09438 nudB dihydroneopterin 24.4 2.2E+02 0.0047 22.4 5.6 18 21-38 9-26 (148)
179 TIGR00241 CoA_E_activ CoA-subs 24.1 69 0.0015 28.1 2.8 20 14-34 95-114 (248)
180 PF01150 GDA1_CD39: GDA1/CD39 24.1 59 0.0013 31.1 2.5 21 9-29 7-27 (434)
181 TIGR03706 exo_poly_only exopol 23.5 1.2E+02 0.0026 27.4 4.3 31 12-43 127-157 (300)
182 TIGR02259 benz_CoA_red_A benzo 23.4 87 0.0019 30.1 3.3 22 13-34 270-291 (432)
183 PF13986 DUF4224: Domain of un 23.2 1.2E+02 0.0026 19.5 3.1 24 158-185 5-28 (47)
184 COG1077 MreB Actin-like ATPase 23.0 63 0.0014 30.0 2.3 16 12-27 8-23 (342)
185 cd02185 AroH Chorismate mutase 22.8 1.1E+02 0.0023 24.0 3.2 31 69-99 16-48 (117)
186 PF01968 Hydantoinase_A: Hydan 22.7 74 0.0016 28.8 2.7 24 9-33 76-99 (290)
187 PF13860 FlgD_ig: FlgD Ig-like 22.5 2.2E+02 0.0047 20.2 4.7 31 10-40 13-45 (81)
188 TIGR01796 CM_mono_aroH monofun 22.1 1.2E+02 0.0026 23.7 3.4 31 69-99 16-48 (117)
189 KOG0104 Molecular chaperones G 21.7 85 0.0018 32.5 3.0 26 8-34 20-45 (902)
190 PF06277 EutA: Ethanolamine ut 21.4 1.1E+02 0.0024 29.9 3.6 36 3-39 136-171 (473)
191 PRK13795 hypothetical protein; 21.4 39 0.00084 34.3 0.7 33 164-196 410-442 (636)
192 PF08841 DDR: Diol dehydratase 21.2 1.5E+02 0.0032 27.2 4.2 28 12-39 136-163 (332)
193 COG3461 Uncharacterized conser 20.8 53 0.0012 24.4 1.1 51 135-196 31-85 (103)
194 COG0145 HyuA N-methylhydantoin 20.5 76 0.0016 32.5 2.5 17 12-28 280-296 (674)
195 cd00496 PheRS_alpha_core Pheny 20.1 89 0.0019 26.9 2.6 27 256-282 169-195 (218)
No 1
>PLN02669 xylulokinase
Probab=100.00 E-value=2.2e-58 Score=451.22 Aligned_cols=286 Identities=81% Similarity=1.234 Sum_probs=265.7
Q ss_pred CCCCCCCceEEEEEcCCCceEEEEEcCCCCEEEEEEeecccCCCccCCCCceeeCCCCCCCcCCChhHHHHHHHHHHHHH
Q 022949 3 DYSLPKDSLFLGFDSSTQSLKATVLDSNLNIVASEQLQFDSELPHYKTKDGVYRDPSNNGRIVSPTLMWIEALDLMLQKL 82 (289)
Q Consensus 3 ~~~~~~~~~~lgIDiGtt~iK~~l~d~~G~il~~~~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~~~~~~~~~~~~~~l 82 (289)
+-||+.++|+||||+|||++|++|+|.+|+++++++++|+..+|++++++++||||++++++++++.+||+++..+++++
T Consensus 1 ~~~~~~~~~~LGiD~GT~s~Ka~l~d~~g~vv~~a~~~~~~~~~~~~~~~gve~dp~~~~~~~~~~~~w~~al~~~l~~l 80 (556)
T PLN02669 1 DLSLPEDSLFLGFDSSTQSLKATVLDSNLRIVASEIVHFDSDLPHYGTKDGVYRDPKVNGRIVSPTLMWVEALDLLLQKL 80 (556)
T ss_pred CCCCCCCCeEEEEecccCCeEEEEEcCCCCEEEEEEecCCcccCcCCCCCceEeCCcccCccCCCHHHHHHHHHHHHHHH
Confidence 45899999999999999999999999999999999999987777777778999999866999999999999999999998
Q ss_pred Hhc-CCCCCEeEEEeccCceeeEEecCC-CcccccCCCCCCCccccccccCCCCCCCeeccCCcHHHHHHHHHHhCChHH
Q 022949 83 SKS-LDLSKVTAVSGSGQQHGSVYWKKG-SATILSSLDPKKPLVDQLGDAFSTKESPVWMDSSTTAQCREIEKAVGGALE 160 (289)
Q Consensus 83 ~~~-~~~~~I~aIgis~~~~~~v~~d~~-g~~~~~~~~~~~~l~~~l~~~~~l~~~i~w~D~Ra~~~~~~~~~~~~~~~~ 160 (289)
.+. .+..+|+|||+|+|+|++|+||++ +++ ++++|++++|+++|++.|.++|+++|+|.|+.++++++++.+++.++
T Consensus 81 ~~~~~~~~~I~aIs~s~Q~~g~v~~d~~~~~~-L~~ld~~g~l~~~L~~a~~~~~~i~W~D~Ra~~e~~~l~~~~gg~~~ 159 (556)
T PLN02669 81 AKEKFPFHKVVAISGSGQQHGSVYWRKGASAV-LKSLDPSKSLVAQLQDAFSTKDSPIWMDSSTTKQCREIEEAVGGAAE 159 (556)
T ss_pred HHcCCChhhEEEEEecCCcceEEEecCCCCcc-ccccccccchhhhhhhhhcCCCCcccCCccHHHHHHHHHHHcCcHHH
Confidence 764 566789999999999999999994 665 67789999999999999988999999999999999999998865678
Q ss_pred HHHHHCCCCCCCChHHHHHHHHhcCcchHhhcccccccchhHHHHhhCCcceecccccccccccccCCCCCcHHHHHHcC
Q 022949 161 LSKLTGSRGYERFTGPQIRKLFQTQPGVYDDTERISVVSSFMASLLIGAYACIDETDAAGMNLMDIRQRVWSKIVLEATA 240 (289)
Q Consensus 161 ~~~~tG~~~~~~~~~~kl~wl~~~~pe~~~~~~~~~~~~d~l~~~LtG~~~~~d~s~As~tgl~d~~~~~W~~~ll~~~g 240 (289)
++++||++.++.|+.+||+|+++|+||+|+|+.+|+.++|||.|+|||+..++|+|+||+++|||+++++|++++|+.++
T Consensus 160 l~~~tG~~~~~~~t~~ki~wl~~~~Pe~y~~t~~i~~~~dyl~~~LtG~~~~~D~sdasg~~l~Di~~~~Ws~~ll~~~~ 239 (556)
T PLN02669 160 LSKLTGSRAYERFTGPQIRKIYETQPEVYHDTERISLVSSFMASLLVGDYASIDETDGAGMNLMDIEKRCWSKAALEATA 239 (556)
T ss_pred HHHHHCCcccccccHHHHHHHHHhChHHHHHHHhhccHHHHHHHhhcCCCccccchhhhhhhhhccccCCcCHHHHHhhC
Confidence 99999999999999999999999999999999999999999999999996459999999999999999999999999997
Q ss_pred CChhhhcCCcccCCccceecCHHHHHHcCCCCCCeEEEccchhhhcCCC
Q 022949 241 PSLEEKLGKLAPAHAVAGCIAPYFVERFHFNKNCLVVQWSGDNPNSLAG 289 (289)
Q Consensus 241 ~~~~~~LP~v~~~g~~~G~v~~~~a~~~GL~~g~pV~~g~~D~~aa~~G 289 (289)
+.+.++||+++++++++|+|++++|+++||++||||++|++|++|+++|
T Consensus 240 ~~l~~~Lp~~~~~~~~~G~v~~~~a~~~Gl~~g~pV~~g~gD~~a~~~G 288 (556)
T PLN02669 240 PGLEEKLGKLAPAHAVAGKIHPYFVQRFGFSSNCLVVQWSGDNPNSLAG 288 (556)
T ss_pred ccHHHHCcCCCCCCcceeeeCHHHHHHhCCCCCCEEEEecchHHHHHhc
Confidence 6546899999999999999999999999999999999999999999986
No 2
>PF00370 FGGY_N: FGGY family of carbohydrate kinases, N-terminal domain; InterPro: IPR018484 It has been shown [] that four different type of carbohydrate kinases seem to be evolutionary related. These enzymes include L-fucolokinase (2.7.1.51 from EC) (gene fucK); gluconokinase (2.7.1.12 from EC) (gene gntK); glycerol kinase (2.7.1.30 from EC) (gene glpK); xylulokinase (2.7.1.17 from EC) (gene xylB); and L-xylulose kinase (2.7.1.53 from EC) (gene lyxK). These enzymes are proteins of from 480 to 520 amino acid residues. This entry represents the N-terminal domain of these proteins. It adopts a ribonuclease H-like fold and is structurally related to the C-terminal domain [, ].; GO: 0016773 phosphotransferase activity, alcohol group as acceptor, 0005975 carbohydrate metabolic process; PDB: 3G25_D 3GE1_D 2NLX_A 2ITM_A 2ZF5_Y 3L0Q_B 3GG4_B 3I8B_A 3H3O_C 3FLC_X ....
Probab=100.00 E-value=1.7e-58 Score=409.61 Aligned_cols=243 Identities=26% Similarity=0.390 Sum_probs=222.4
Q ss_pred eEEEEEcCCCceEEEEEcCCCCEEEEEEeecccCCCccCCCCceeeCCCCCCCcCCChhHHHHHHHHHHHHHHhc--CCC
Q 022949 11 LFLGFDSSTQSLKATVLDSNLNIVASEQLQFDSELPHYKTKDGVYRDPSNNGRIVSPTLMWIEALDLMLQKLSKS--LDL 88 (289)
Q Consensus 11 ~~lgIDiGtt~iK~~l~d~~G~il~~~~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~ 88 (289)
|+||||+||||+|++|+|.+|+++...+++++...+++ |+.+|||+ +||+.+.++++++.+. .+.
T Consensus 1 y~lgiDiGTts~K~~l~d~~g~iv~~~~~~~~~~~~~~---g~~e~d~~----------~~~~~~~~~~~~~~~~~~~~~ 67 (245)
T PF00370_consen 1 YYLGIDIGTTSVKAVLFDEDGKIVASASRPYPYYTPEP---GWAEQDPD----------EIWEAICEALKELLSQAGIDP 67 (245)
T ss_dssp EEEEEEECSSEEEEEEEETTSCEEEEEEEEETEBCSST---TEEEE-HH----------HHHHHHHHHHHHHHHHCTSCG
T ss_pred CEEEEEEcccceEEEEEeCCCCEEEEEEEeeeeccccc---cccccChH----------HHHHHHHHHHHHHHhhcCccc
Confidence 79999999999999999999999999999999877765 57888888 9999999999998764 467
Q ss_pred CCEeEEEeccCceeeEEecCCCcccccCCCCCCCccccccccCCCCCCCeeccCCcHHHHHHHHHHhCChHHHHHHHCCC
Q 022949 89 SKVTAVSGSGQQHGSVYWKKGSATILSSLDPKKPLVDQLGDAFSTKESPVWMDSSTTAQCREIEKAVGGALELSKLTGSR 168 (289)
Q Consensus 89 ~~I~aIgis~~~~~~v~~d~~g~~~~~~~~~~~~l~~~l~~~~~l~~~i~w~D~Ra~~~~~~~~~~~~~~~~~~~~tG~~ 168 (289)
.+|.+|||++|+++++++|++++| ++|+++|+|+|+.++++++++.. ..+++++.||.+
T Consensus 68 ~~I~aI~is~~~~~~v~~D~~~~p--------------------l~~~i~w~D~R~~~~~~~l~~~~-~~~~~~~~tG~~ 126 (245)
T PF00370_consen 68 EQIKAIGISGQGHGLVLLDKDGKP--------------------LRPAILWMDTRAAEEAEELNEEG-SPEEIYEKTGLP 126 (245)
T ss_dssp GGEEEEEEEE-SSEEEEEETTSSB--------------------SSCEE-TT-CTTHHHHHHHHHHT-HHHHHHHHHSS-
T ss_pred ceeEEEEeccccCCcceecccccc--------------------ccccccccccchhhHHHHHHhhc-Ccceeeeecccc
Confidence 899999999999999999999998 58999999999999999999864 468999999999
Q ss_pred CCCCChHHHHHHHHhcCcchHhhcccccccchhHHHHhhCCcceecccccccccccccCCCCCcHHHHHHcCCChhhhcC
Q 022949 169 GYERFTGPQIRKLFQTQPGVYDDTERISVVSSFMASLLIGAYACIDETDAAGMNLMDIRQRVWSKIVLEATAPSLEEKLG 248 (289)
Q Consensus 169 ~~~~~~~~kl~wl~~~~pe~~~~~~~~~~~~d~l~~~LtG~~~~~d~s~As~tgl~d~~~~~W~~~ll~~~g~~~~~~LP 248 (289)
+++.++++||+|+++|+|+.++++++|++++|||.|+|||+.. +|+|+|++||+||+++++|++++++.+|++ .++||
T Consensus 127 ~~~~~~~~kl~wl~~~~p~~~~~~~~~~~~~dyl~~~LtG~~~-~d~s~as~tgl~d~~~~~w~~~~l~~~gi~-~~~lP 204 (245)
T PF00370_consen 127 LSPGYPLAKLLWLKENEPEIFEKAAKFLTLSDYLAYKLTGRAA-TDYSNASRTGLYDIRTGQWDEELLEALGIP-EELLP 204 (245)
T ss_dssp SSTTSHHHHHHHHHHHSHHHHHHHHEEEEHHHHHHHHHHSC-E-EEHHHHCTSSSEETTTTEE-HHHHHHTTSG-GGGSC
T ss_pred ccccchHHHHHHHHHhCchhhhhhhhcccHHHHHHhhcccccc-ccccchhccccccccccccCHHHHHhhCCC-hhhCC
Confidence 9999999999999999999999999999999999999999987 999999999999999999999999999998 79999
Q ss_pred CcccCCccceecCHHHHHHcCCCCCCeEEEccchhhhcCCC
Q 022949 249 KLAPAHAVAGCIAPYFVERFHFNKNCLVVQWSGDNPNSLAG 289 (289)
Q Consensus 249 ~v~~~g~~~G~v~~~~a~~~GL~~g~pV~~g~~D~~aa~~G 289 (289)
+|+++|+++|++++++|+++|||+|+||++|++|++||++|
T Consensus 205 ~i~~~g~~~G~~~~~~a~~~Gl~~~~pV~~g~~D~~aa~lG 245 (245)
T PF00370_consen 205 EIVPPGEIIGTLTPEAAKELGLPEGTPVIAGGGDQAAAALG 245 (245)
T ss_dssp EEE-TTSEEEEEEHHHHHHHTSTTTEEEEEEEEHHHHHHHH
T ss_pred cEecCCCeeEEECHHHHHHhCCCCCCEEEEEchHHHHhhcC
Confidence 99999999999999999999999999999999999999886
No 3
>PRK10331 L-fuculokinase; Provisional
Probab=100.00 E-value=2.7e-55 Score=423.07 Aligned_cols=244 Identities=19% Similarity=0.216 Sum_probs=224.4
Q ss_pred ceEEEEEcCCCceEEEEEcCCCCEEEEEEeecccC--CCccCCCCceeeCCCCCCCcCCChhHHHHHHHHHHHHHHhcCC
Q 022949 10 SLFLGFDSSTQSLKATVLDSNLNIVASEQLQFDSE--LPHYKTKDGVYRDPSNNGRIVSPTLMWIEALDLMLQKLSKSLD 87 (289)
Q Consensus 10 ~~~lgIDiGtt~iK~~l~d~~G~il~~~~~~~~~~--~~~~~~~g~~e~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 87 (289)
+|+||||+|||++|++|+|.+|++++..+.+++.. .+.+ |++||||+ +||++++++++++.+...
T Consensus 2 ~~~lgID~GTt~~Ka~l~d~~G~~~~~~~~~~~~~~~~~~~---g~~eqd~~----------~~w~~~~~~~~~~~~~~~ 68 (470)
T PRK10331 2 DVILVLDCGATNVRAIAVDRQGKIVARASTPNASDIAAENS---DWHQWSLD----------AILQRFADCCRQINSELT 68 (470)
T ss_pred ceEEEEecCCCceEEEEEcCCCcEEEEEecccccccCCCCC---CCcccCHH----------HHHHHHHHHHHHHHHhCC
Confidence 48999999999999999999999999999887632 3343 46777777 999999999999865433
Q ss_pred CCCEeEEEeccCceeeEEecCCCcccccCCCCCCCccccccccCCCCCCCeeccCCcHHHHHHHHHHhCChHHHHHHHCC
Q 022949 88 LSKVTAVSGSGQQHGSVYWKKGSATILSSLDPKKPLVDQLGDAFSTKESPVWMDSSTTAQCREIEKAVGGALELSKLTGS 167 (289)
Q Consensus 88 ~~~I~aIgis~~~~~~v~~d~~g~~~~~~~~~~~~l~~~l~~~~~l~~~i~w~D~Ra~~~~~~~~~~~~~~~~~~~~tG~ 167 (289)
..+|.+||||+|+++++++|++|+| ++|+|+|+|.|+.++++++++.++ .++++++||+
T Consensus 69 ~~~I~~I~is~~~~~~v~~D~~G~p--------------------l~p~i~w~D~Ra~~~~~~l~~~~~-~~~~~~~tG~ 127 (470)
T PRK10331 69 ECHIRGITVTTFGVDGALVDKQGNL--------------------LYPIISWKCPRTAAVMENIERYIS-AQQLQQISGV 127 (470)
T ss_pred ccceEEEEEeccccceEEECCCcCC--------------------ccCceeecCCCcHHHHHHHHHhcC-HHHHHhhhCC
Confidence 4579999999999999999999998 589999999999999999998863 5789999999
Q ss_pred CCCCCChHHHHHHHHhcCcchHhhcccccccchhHHHHhhCCcceecccccccccccccCCCCCcHHHHHHcCCChhhhc
Q 022949 168 RGYERFTGPQIRKLFQTQPGVYDDTERISVVSSFMASLLIGAYACIDETDAAGMNLMDIRQRVWSKIVLEATAPSLEEKL 247 (289)
Q Consensus 168 ~~~~~~~~~kl~wl~~~~pe~~~~~~~~~~~~d~l~~~LtG~~~~~d~s~As~tgl~d~~~~~W~~~ll~~~g~~~~~~L 247 (289)
++.+.++++||+|+++|+||+++|+++|++++|||.|+|||+.. +|+|+|+.|++||+++++|++++++.+|++ .++|
T Consensus 128 ~~~~~~~~~Kl~Wl~~~~P~~~~~~~~~l~~~dyl~~~LTG~~~-~d~s~As~t~l~d~~~~~W~~ell~~~gi~-~~~l 205 (470)
T PRK10331 128 GAFSFNTLYKLVWLKENHPQLLEQAHAWLFISSLINHRLTGEFT-TDITMAGTSQMLDIQQRDFSPEILQATGLS-RRLF 205 (470)
T ss_pred CccccchHHHHHHHHHhCHHHHHHhhhhcCHHHHHHHhhcCccc-cchhhccceeeeecccCCCCHHHHHHcCCC-HHHC
Confidence 99899999999999999999999999999999999999999987 999999999999999999999999999998 8999
Q ss_pred CCcccCCccceecCHHHHHHcCCCCCCeEEEccchhhhcCCC
Q 022949 248 GKLAPAHAVAGCIAPYFVERFHFNKNCLVVQWSGDNPNSLAG 289 (289)
Q Consensus 248 P~v~~~g~~~G~v~~~~a~~~GL~~g~pV~~g~~D~~aa~~G 289 (289)
|+|+++++++|+|++++|+++||++|+||++|++|++|+++|
T Consensus 206 P~i~~~g~~~G~v~~~~a~~~GL~~g~pV~~g~~D~~aa~~g 247 (470)
T PRK10331 206 PRLVEAGEQIGTLQPSAAALLGLPVGIPVISAGHDTQFALFG 247 (470)
T ss_pred CCcccccccccccCHHHHHHhCCCCCCeEEEccccHHHHHhC
Confidence 999999999999999999999999999999999999999986
No 4
>COG1070 XylB Sugar (pentulose and hexulose) kinases [Carbohydrate transport and metabolism]
Probab=100.00 E-value=5.7e-55 Score=423.47 Aligned_cols=247 Identities=26% Similarity=0.418 Sum_probs=232.1
Q ss_pred CCCceEEEEEcCCCceEEEEEcCC-CCEEEEEEeecccCCCccCCCCceeeCCCCCCCcCCChhHHHHHHHHHHHHHHhc
Q 022949 7 PKDSLFLGFDSSTQSLKATVLDSN-LNIVASEQLQFDSELPHYKTKDGVYRDPSNNGRIVSPTLMWIEALDLMLQKLSKS 85 (289)
Q Consensus 7 ~~~~~~lgIDiGtt~iK~~l~d~~-G~il~~~~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 85 (289)
++.+|+||||+|||++|++++|.+ |++++..+..++..+|+| ||.||||+ +||+.+.++++++.+.
T Consensus 1 ~~~~~~lgIDiGTt~~Kavl~d~~~~~~~~~~~~~~~~~~~~~---g~~e~d~~----------~~w~~~~~ai~~l~~~ 67 (502)
T COG1070 1 MMMKYVLGIDIGTTSVKAVLFDEDGGEVVATARFENPVSTPQP---GWAEQDPD----------ELWQAILEALRQLLEE 67 (502)
T ss_pred CCccEEEEEEcCCCcEEEEEEeCCCCeEEEEeeccccccCCCC---CCcccCHH----------HHHHHHHHHHHHHHHh
Confidence 467899999999999999999999 899999999998877776 57888888 9999999999998764
Q ss_pred --CCCCCEeEEEeccCceeeEEecCCCcccccCCCCCCCccccccccCCCCCCCeeccCCcHHHHHHHHHHhCChHHHHH
Q 022949 86 --LDLSKVTAVSGSGQQHGSVYWKKGSATILSSLDPKKPLVDQLGDAFSTKESPVWMDSSTTAQCREIEKAVGGALELSK 163 (289)
Q Consensus 86 --~~~~~I~aIgis~~~~~~v~~d~~g~~~~~~~~~~~~l~~~l~~~~~l~~~i~w~D~Ra~~~~~~~~~~~~~~~~~~~ 163 (289)
++..+|.||||++|+++++++|++|+| ++|+|+|+|.|+.++++++.+.+++ ++.+.
T Consensus 68 ~~~~~~~I~aI~is~~~~g~vllD~~g~~--------------------L~~~i~w~D~R~~~~~~~l~~~~~~-~~~~~ 126 (502)
T COG1070 68 SKIDPDAIAAIGISGQGHGLVLLDANGEP--------------------LRPAILWNDTRAAEEVEELEERLGG-EALYA 126 (502)
T ss_pred cccChhhceEEEEeccccceEEECCCCCC--------------------ccccceecchhhHHHHHHHHhhccc-hhhhh
Confidence 567889999999999999999999998 5899999999999999999998754 67788
Q ss_pred HHCCCCCCCChHHHHHHHHhcCcchHhhcccccccchhHHHHhhCCcceecccccccccccccCCCCCcHHHHHHcCCCh
Q 022949 164 LTGSRGYERFTGPQIRKLFQTQPGVYDDTERISVVSSFMASLLIGAYACIDETDAAGMNLMDIRQRVWSKIVLEATAPSL 243 (289)
Q Consensus 164 ~tG~~~~~~~~~~kl~wl~~~~pe~~~~~~~~~~~~d~l~~~LtG~~~~~d~s~As~tgl~d~~~~~W~~~ll~~~g~~~ 243 (289)
.||+++.+.++++||+|+++|+||+|+|+++|++++|||.|+|||+.+ +|+|+|+.|+|||++++.|+.++|+.+|++
T Consensus 127 ~t~~~~~~~~t~~kL~Wl~~~~P~~~~k~~~il~~~dyl~~rLTG~~~-~e~s~as~t~l~d~~~~~w~~~~l~~~gl~- 204 (502)
T COG1070 127 RTGLQAMPGFTAPKLLWLKENEPDLFAKAAKILLIKDYLRYRLTGEFA-TEISDASGTGLLDIRTRKWDWELLAALGLP- 204 (502)
T ss_pred hcCCCcCccccHHHHHHHHhcCcHHHHhhhheechHHHHHHHHhCCcc-cccccccccccccccccccCHHHHHHcCCC-
Confidence 899999999999999999999999999999999999999999999987 999999999999999999999999999986
Q ss_pred h-hhcCCcccCCccceecCHHHHHHcCCCCCCeEEEccchhhhcCCC
Q 022949 244 E-EKLGKLAPAHAVAGCIAPYFVERFHFNKNCLVVQWSGDNPNSLAG 289 (289)
Q Consensus 244 ~-~~LP~v~~~g~~~G~v~~~~a~~~GL~~g~pV~~g~~D~~aa~~G 289 (289)
+ ++||+|+++++++|+|++++|+++||++++||++|+||++++++|
T Consensus 205 ~~~~lp~vv~~g~~~G~l~~e~A~~~Gl~~~~pV~~G~~D~~~a~lg 251 (502)
T COG1070 205 ERDLLPPVVEPGEVLGTLTPEAAEELGLPAGTPVVVGGGDNAAAALG 251 (502)
T ss_pred hHHhCCCccCccceeccccHHHHHHhCCCCCCeEEECCchHHHHhcc
Confidence 5 899999999999999999999999999999999999999999987
No 5
>TIGR02628 fuculo_kin_coli L-fuculokinase. Members of this family are L-fuculokinase, from the clade that includes the L-fuculokinase of Escherichia coli. This enzyme catalyzes the second step in fucose catabolism. This family belongs to FGGY family of carbohydrate kinases (pfam02782, pfam00370). It is encoded by the kinase (K) gene of the fucose (fuc) operon.
Probab=100.00 E-value=1.8e-54 Score=416.68 Aligned_cols=244 Identities=19% Similarity=0.219 Sum_probs=224.9
Q ss_pred ceEEEEEcCCCceEEEEEcCCCCEEEEEEeeccc--CCCccCCCCceeeCCCCCCCcCCChhHHHHHHHHHHHHHHhcCC
Q 022949 10 SLFLGFDSSTQSLKATVLDSNLNIVASEQLQFDS--ELPHYKTKDGVYRDPSNNGRIVSPTLMWIEALDLMLQKLSKSLD 87 (289)
Q Consensus 10 ~~~lgIDiGtt~iK~~l~d~~G~il~~~~~~~~~--~~~~~~~~g~~e~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 87 (289)
.|+||||+|||++|++|+|.+|++++..+.+++. ..+.+ |+.||||+ +||+.++++++++.+...
T Consensus 1 ~~ilgiD~GTss~K~~l~d~~g~~va~~~~~~~~~~~~~~~---g~~eqd~~----------~~w~~~~~~~~~l~~~~~ 67 (465)
T TIGR02628 1 EVILVLDCGATNLRAIAINRQGKIVASASTPNATKQAIENN---DYHIWDLE----------AIWQKLADCCQQINSELT 67 (465)
T ss_pred CeEEEEecCCCcEEEEEEcCCCCEEEEEecccccCCCCCCC---CceeeCHH----------HHHHHHHHHHHHHHhhcC
Confidence 3789999999999999999999999999988663 23444 56777777 999999999999874334
Q ss_pred CCCEeEEEeccCceeeEEecCCCcccccCCCCCCCccccccccCCCCCCCeeccCCcHHHHHHHHHHhCChHHHHHHHCC
Q 022949 88 LSKVTAVSGSGQQHGSVYWKKGSATILSSLDPKKPLVDQLGDAFSTKESPVWMDSSTTAQCREIEKAVGGALELSKLTGS 167 (289)
Q Consensus 88 ~~~I~aIgis~~~~~~v~~d~~g~~~~~~~~~~~~l~~~l~~~~~l~~~i~w~D~Ra~~~~~~~~~~~~~~~~~~~~tG~ 167 (289)
..+|.+||+++|+++++++|++|+| ++|+|+|+|.|+.++++++.+.++ .++++++||+
T Consensus 68 ~~~I~aI~~s~~~~~~v~~D~~G~~--------------------l~p~i~w~D~R~~~~~~~l~~~~~-~~~~~~~tG~ 126 (465)
T TIGR02628 68 EKHIRGIAVTTFGVDGAPFDKQGNQ--------------------LYPIISWKCPRTAPVMDNIERLLD-AQRLYAINGI 126 (465)
T ss_pred hhceEEEEEeccccceEEECCCCCC--------------------ccccccccCcccHHHHHHHHHhhC-HHHHHHHhCC
Confidence 5679999999999999999999998 589999999999999999998764 5789999999
Q ss_pred CCCCCChHHHHHHHHhcCcchHhhcccccccchhHHHHhhCCcceecccccccccccccCCCCCcHHHHHHcCCChhhhc
Q 022949 168 RGYERFTGPQIRKLFQTQPGVYDDTERISVVSSFMASLLIGAYACIDETDAAGMNLMDIRQRVWSKIVLEATAPSLEEKL 247 (289)
Q Consensus 168 ~~~~~~~~~kl~wl~~~~pe~~~~~~~~~~~~d~l~~~LtG~~~~~d~s~As~tgl~d~~~~~W~~~ll~~~g~~~~~~L 247 (289)
++.+.++++||+|+++|+||+|+|+++|++++|||.|+|||+.. +|+|+|+.|+|||+++++|++++|+.+|++ .++|
T Consensus 127 ~~~~~~~~~kl~wl~~~~pe~~~~~~~~l~~~dyl~~~LTG~~~-~d~s~As~t~l~d~~~~~w~~ell~~~gi~-~~~l 204 (465)
T TIGR02628 127 GAYSFNTLYKLVWLKEHHPQLFERMHKFVFISSMITHRLTGEFT-TDITMAGTSMMTDLTQRNWSPQILQALGLS-RRLF 204 (465)
T ss_pred CccccchHHHHHHHHHhChHHHHHHHHhhCcHHHHHHHHhCCcc-cchhhhhcceeeecCcCCCCHHHHHHcCCC-HHHC
Confidence 99888999999999999999999999999999999999999987 999999999999999999999999999998 7999
Q ss_pred CCcccCCccceecCHHHHHHcCCCCCCeEEEccchhhhcCCC
Q 022949 248 GKLAPAHAVAGCIAPYFVERFHFNKNCLVVQWSGDNPNSLAG 289 (289)
Q Consensus 248 P~v~~~g~~~G~v~~~~a~~~GL~~g~pV~~g~~D~~aa~~G 289 (289)
|+++++++++|+|++++|+++||++|+||++|++|++|+++|
T Consensus 205 P~l~~~~~~~G~v~~~~a~~~Gl~~g~pV~~g~~D~~aa~~g 246 (465)
T TIGR02628 205 PPLVEAGEQIGTLQNSAAAMLGLPVGVPVISAGHDTQFALFG 246 (465)
T ss_pred CCcccCCccceeeCHHHHHHhCCCCCCCEEecCccHHHHHhc
Confidence 999999999999999999999999999999999999999886
No 6
>TIGR01314 gntK_FGGY gluconate kinase, FGGY type. Gluconate is derived from glucose in two steps. This model describes one form of gluconate kinase, belonging to the FGGY family of carbohydrate kinases. Gluconate kinase phosphoryates gluconate for entry into the Entner-Douderoff pathway.
Probab=100.00 E-value=1.2e-53 Score=415.03 Aligned_cols=242 Identities=20% Similarity=0.292 Sum_probs=226.3
Q ss_pred eEEEEEcCCCceEEEEEcCCCCEEEEEEeecccCCCccCCCCceeeCCCCCCCcCCChhHHHHHHHHHHHHHHhc--CCC
Q 022949 11 LFLGFDSSTQSLKATVLDSNLNIVASEQLQFDSELPHYKTKDGVYRDPSNNGRIVSPTLMWIEALDLMLQKLSKS--LDL 88 (289)
Q Consensus 11 ~~lgIDiGtt~iK~~l~d~~G~il~~~~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~ 88 (289)
|+||||+|||++|++|+|.+|++++..+.+++...+.+ |+.||||+ +||+.+..+++++.+. ..
T Consensus 1 ~~lgiDiGtt~~K~~l~d~~g~i~~~~~~~~~~~~~~~---g~~e~d~~----------~~~~~~~~~i~~~~~~~~~~- 66 (505)
T TIGR01314 1 YMIGVDIGTTSTKAVLFEENGKIVAKSSIGYPLYTPAS---GMAEENPE----------EIFEAVLVTIREVSINLEDE- 66 (505)
T ss_pred CEEEEeccccceEEEEEcCCCCEEEEEEeecccccCCC---CCeeeCHH----------HHHHHHHHHHHHHHHhCCCc-
Confidence 58999999999999999999999999999888666665 46888888 9999999999988764 23
Q ss_pred CCEeEEEeccCceeeEEecCCCcccccCCCCCCCccccccccCCCCCCCeeccCCcHHHHHHHHHHhCChHHHHHHHCCC
Q 022949 89 SKVTAVSGSGQQHGSVYWKKGSATILSSLDPKKPLVDQLGDAFSTKESPVWMDSSTTAQCREIEKAVGGALELSKLTGSR 168 (289)
Q Consensus 89 ~~I~aIgis~~~~~~v~~d~~g~~~~~~~~~~~~l~~~l~~~~~l~~~i~w~D~Ra~~~~~~~~~~~~~~~~~~~~tG~~ 168 (289)
.+|.+|||++|+++++++|++|+| ++|+|+|+|.|+.++++++++.++ .++++++||++
T Consensus 67 ~~I~~Igis~~~~~~v~~D~~g~p--------------------l~~~i~w~D~R~~~~~~~l~~~~~-~~~~~~~tG~~ 125 (505)
T TIGR01314 67 DEILFVSFSTQMHSLIAFDENWQP--------------------LTRLITWADNRAVKYAEQIKESKN-GFDIYRRTGTP 125 (505)
T ss_pred CceEEEEEecccceeEEECCCcCC--------------------cccceeccccchHHHHHHHHhhcC-HHHHHHHHCCC
Confidence 679999999999999999999998 589999999999999999998764 57899999999
Q ss_pred CCCCChHHHHHHHHhcCcchHhhcccccccchhHHHHhhCCcceecccccccccccccCCCCCcHHHHHHcCCChhhhcC
Q 022949 169 GYERFTGPQIRKLFQTQPGVYDDTERISVVSSFMASLLIGAYACIDETDAAGMNLMDIRQRVWSKIVLEATAPSLEEKLG 248 (289)
Q Consensus 169 ~~~~~~~~kl~wl~~~~pe~~~~~~~~~~~~d~l~~~LtG~~~~~d~s~As~tgl~d~~~~~W~~~ll~~~g~~~~~~LP 248 (289)
+++.++++||+|+++|+|++|+|+++|++++|||.|+|||+.. +|+|+|++||+||+++++|++++++.+|++ +++||
T Consensus 126 ~~~~~~~~kl~Wl~~~~p~~~~~~~~~l~~~dyl~~~LTG~~~-~d~s~As~t~l~d~~~~~W~~ell~~~gi~-~~~lP 203 (505)
T TIGR01314 126 IHPMAPLSKIIWLEAEHPDIYQKAAKYLEIKGYIFQRLFGTYK-IDYSTASATGMFNLFELDWDKEALELTGIK-ESQLP 203 (505)
T ss_pred CCccchHHHHHHHHHhChhHHHhhcEEECHHHHHHHHHcCCce-eEhhhhhhhcceeCCCCCCCHHHHHhcCCC-HHHCC
Confidence 9999999999999999999999999999999999999999987 999999999999999999999999999998 89999
Q ss_pred CcccCCccceecCHHHHHHcCCCCCCeEEEccchhhhcCCC
Q 022949 249 KLAPAHAVAGCIAPYFVERFHFNKNCLVVQWSGDNPNSLAG 289 (289)
Q Consensus 249 ~v~~~g~~~G~v~~~~a~~~GL~~g~pV~~g~~D~~aa~~G 289 (289)
+|+++++++|+|++++|+++||++|+||++|++|++|+++|
T Consensus 204 ~l~~~g~~iG~l~~~~a~~~GL~~g~pV~~g~~D~~aa~~g 244 (505)
T TIGR01314 204 KLVPTTEIEENLPHEYAKKMGIQSSTPFVIGASDGVLSNLG 244 (505)
T ss_pred CCcCcccccCCcCHHHHHHhCCCCCCeEEEeccHHHHHHhc
Confidence 99999999999999999999999999999999999999886
No 7
>PRK15027 xylulokinase; Provisional
Probab=100.00 E-value=2e-53 Score=411.44 Aligned_cols=240 Identities=24% Similarity=0.440 Sum_probs=223.6
Q ss_pred eEEEEEcCCCceEEEEEcCCCCEEEEEEeecccCCCccCCCCceeeCCCCCCCcCCChhHHHHHHHHHHHHHHhcCCCCC
Q 022949 11 LFLGFDSSTQSLKATVLDSNLNIVASEQLQFDSELPHYKTKDGVYRDPSNNGRIVSPTLMWIEALDLMLQKLSKSLDLSK 90 (289)
Q Consensus 11 ~~lgIDiGtt~iK~~l~d~~G~il~~~~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 90 (289)
++||||+|||++|++|||.+|++++..+.+++..++.+ +++||||+ +||++++++++++.+.....+
T Consensus 1 ~~lgID~GTts~Ka~l~d~~G~vva~~~~~~~~~~~~~---g~~eqd~~----------~~w~~~~~~~~~l~~~~~~~~ 67 (484)
T PRK15027 1 MYIGIDLGTSGVKVILLNEQGEVVASQTEKLTVSRPHP---LWSEQDPE----------QWWQATDRAMKALGDQHSLQD 67 (484)
T ss_pred CEEEEEecccceEEEEEcCCCCEEEEEeecccccCCCC---CccccCHH----------HHHHHHHHHHHHHHHhCCccc
Confidence 58999999999999999999999999999998766665 46888887 999999999999876434567
Q ss_pred EeEEEeccCceeeEEecCCCcccccCCCCCCCccccccccCCCCCCCeeccCCcHHHHHHHHHHhCChHHHHHHHCCCCC
Q 022949 91 VTAVSGSGQQHGSVYWKKGSATILSSLDPKKPLVDQLGDAFSTKESPVWMDSSTTAQCREIEKAVGGALELSKLTGSRGY 170 (289)
Q Consensus 91 I~aIgis~~~~~~v~~d~~g~~~~~~~~~~~~l~~~l~~~~~l~~~i~w~D~Ra~~~~~~~~~~~~~~~~~~~~tG~~~~ 170 (289)
|.+||||+|+++++++|++|+| ++|+++|+|.|+.++++++.+.++ .+++.||++++
T Consensus 68 I~aI~is~q~~~~v~~D~~g~~--------------------l~p~i~w~D~R~~~~~~~l~~~~~---~~~~~tG~~~~ 124 (484)
T PRK15027 68 VKALGIAGQMHGATLLDAQQRV--------------------LRPAILWNDGRCAQECALLEARVP---QSRVITGNLMM 124 (484)
T ss_pred eeEEEEecCCCceEEECCCcCC--------------------ccccccccCccHHHHHHHHHHhcc---hhHHHhCCCcC
Confidence 9999999999999999999998 589999999999999999998753 46789999999
Q ss_pred CCChHHHHHHHHhcCcchHhhcccccccchhHHHHhhCCcceecccccccccccccCCCCCcHHHHHHcCCChhhhcCCc
Q 022949 171 ERFTGPQIRKLFQTQPGVYDDTERISVVSSFMASLLIGAYACIDETDAAGMNLMDIRQRVWSKIVLEATAPSLEEKLGKL 250 (289)
Q Consensus 171 ~~~~~~kl~wl~~~~pe~~~~~~~~~~~~d~l~~~LtG~~~~~d~s~As~tgl~d~~~~~W~~~ll~~~g~~~~~~LP~v 250 (289)
+.++++||+|+++|+||+|+|+++|++++|||+|+|||+.. +|+|+|++|++||+++++|++++++.+|++ .++||+|
T Consensus 125 ~~~~~~kl~Wl~~~~Pe~~~~~~~~~~~~dyl~~~LTG~~~-~d~s~as~t~l~d~~~~~w~~~ll~~~gi~-~~~lP~v 202 (484)
T PRK15027 125 PGFTAPKLLWVQRHEPEIFRQIDKVLLPKDYLRLRMTGEFA-SDMSDAAGTMWLDVAKRDWSDVMLQACHLS-RDQMPAL 202 (484)
T ss_pred ccchHHHHHHHHHhCHHHHHHhhhhcChHHHHHhhhcCCcc-ccHHHhhcccccccccCCCcHHHHHHhCCC-HHHCCCC
Confidence 99999999999999999999999999999999999999987 999999999999999999999999999988 8999999
Q ss_pred ccCCccceecCHHHHHHcCCCCCCeEEEccchhhhcCCC
Q 022949 251 APAHAVAGCIAPYFVERFHFNKNCLVVQWSGDNPNSLAG 289 (289)
Q Consensus 251 ~~~g~~~G~v~~~~a~~~GL~~g~pV~~g~~D~~aa~~G 289 (289)
+++++++|+|++++|+++||+ +|||++|++|++|+++|
T Consensus 203 ~~~~~~~G~l~~~~a~~~GL~-~~pV~~g~~D~~aa~~g 240 (484)
T PRK15027 203 YEGSEITGALLPEVAKAWGMA-TVPVVAGGGDNAAGAVG 240 (484)
T ss_pred CCCccccccccHHHHHHhCCC-CCeEEecccHHHHHHhc
Confidence 999999999999999999997 69999999999999986
No 8
>PRK10939 autoinducer-2 (AI-2) kinase; Provisional
Probab=100.00 E-value=8.2e-52 Score=403.34 Aligned_cols=243 Identities=19% Similarity=0.265 Sum_probs=220.2
Q ss_pred ceEEEEEcCCCceEEEEEcCCCCEEEEEEeecccCC--CccCCCCceeeCCCCCCCcCCChhHHHHHHHHHHHHHHhc--
Q 022949 10 SLFLGFDSSTQSLKATVLDSNLNIVASEQLQFDSEL--PHYKTKDGVYRDPSNNGRIVSPTLMWIEALDLMLQKLSKS-- 85 (289)
Q Consensus 10 ~~~lgIDiGtt~iK~~l~d~~G~il~~~~~~~~~~~--~~~~~~g~~e~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~-- 85 (289)
+|+||||+|||++|++|||.+|++++..+.+++... +.+ |++||||+ +||+++.++++++.++
T Consensus 3 ~~~lgID~GTts~Ka~l~d~~G~~l~~~~~~~~~~~~~~~~---g~~Eqd~~----------~~w~~~~~~l~~~~~~~~ 69 (520)
T PRK10939 3 SYLMALDAGTGSIRAVIFDLNGNQIAVGQAEWRHLAVPDVP---GSMEFDLE----------KNWQLACQCIRQALQKAG 69 (520)
T ss_pred cEEEEEecCCCceEEEEECCCCCEEEEEeccccccCCCCCC---CCeeECHH----------HHHHHHHHHHHHHHHHcC
Confidence 499999999999999999999999999988876432 233 56788887 9999999999987643
Q ss_pred CCCCCEeEEEeccCceeeEEecCCCcccccCCCCCCCccccccccCCCCCCCeeccCCcHHHHHHHHHHhCC-hHHHHHH
Q 022949 86 LDLSKVTAVSGSGQQHGSVYWKKGSATILSSLDPKKPLVDQLGDAFSTKESPVWMDSSTTAQCREIEKAVGG-ALELSKL 164 (289)
Q Consensus 86 ~~~~~I~aIgis~~~~~~v~~d~~g~~~~~~~~~~~~l~~~l~~~~~l~~~i~w~D~Ra~~~~~~~~~~~~~-~~~~~~~ 164 (289)
....+|.+||+|+|++++++||++|+| +.+ ++|+|.|+.++++++++.++. .++++++
T Consensus 70 ~~~~~I~aI~~s~~~~~~v~~D~~g~p--------------------l~~-~~~~D~Ra~~~~~~l~~~~~~~~~~~~~~ 128 (520)
T PRK10939 70 IPASDIAAVSATSMREGIVLYDRNGTE--------------------IWA-CANVDARASREVSELKELHNNFEEEVYRC 128 (520)
T ss_pred CCccceEEEEEECCcccEEEECCCCCE--------------------eeC-CcCCCcccHHHHHHHHHhcChHHHHHHHH
Confidence 456679999999999999999999998 333 678999999999999987642 3688999
Q ss_pred HCCCCCCCChHHHHHHHHhcCcchHhhcccccccchhHHHHhhCCcceecccccccccccccCCCCCcHHHHHHcCCChh
Q 022949 165 TGSRGYERFTGPQIRKLFQTQPGVYDDTERISVVSSFMASLLIGAYACIDETDAAGMNLMDIRQRVWSKIVLEATAPSLE 244 (289)
Q Consensus 165 tG~~~~~~~~~~kl~wl~~~~pe~~~~~~~~~~~~d~l~~~LtG~~~~~d~s~As~tgl~d~~~~~W~~~ll~~~g~~~~ 244 (289)
||.++ +.++++||+|+++|+||+|+|+++|++++|||.|+|||+.. +|+|+|++|||||+++++|++++++.+|++ .
T Consensus 129 tG~~~-~~~~~~kl~Wl~~~~pe~~~~~~~~~~~~dyl~~~LTG~~~-~d~s~As~tgl~d~~~~~W~~~ll~~~gi~-~ 205 (520)
T PRK10939 129 SGQTL-ALGALPRLLWLAHHRPDIYRQAHTITMISDWIAYMLSGELA-VDPSNAGTTGLLDLVTRDWDPALLEMAGLR-A 205 (520)
T ss_pred hCCcC-CcchHHHHHHHHHcCcHHHHHhheEechhHhhhheeeCcee-eEhhhhhceeeeecCCCCCCHHHHHHcCCC-H
Confidence 99875 67899999999999999999999999999999999999987 999999999999999999999999999998 8
Q ss_pred hhcCCcccCCccceecCHHHHHHcCCCCCCeEEEccchhhhcCCC
Q 022949 245 EKLGKLAPAHAVAGCIAPYFVERFHFNKNCLVVQWSGDNPNSLAG 289 (289)
Q Consensus 245 ~~LP~v~~~g~~~G~v~~~~a~~~GL~~g~pV~~g~~D~~aa~~G 289 (289)
++||+|+++++++|+|++++|+++||++|+||++|++|++|+++|
T Consensus 206 ~~lP~i~~~g~~~G~v~~~~A~~~GL~~g~pV~~g~~D~~aa~~g 250 (520)
T PRK10939 206 DILPPVKETGTVLGHVTAKAAAETGLRAGTPVVMGGGDVQLGCLG 250 (520)
T ss_pred HHCCCCccCCceeeeecHHHHHhhCCCCCCcEEEeCchHHHHHhh
Confidence 999999999999999999999999999999999999999999986
No 9
>PTZ00294 glycerol kinase-like protein; Provisional
Probab=100.00 E-value=1.2e-51 Score=400.71 Aligned_cols=241 Identities=23% Similarity=0.330 Sum_probs=218.3
Q ss_pred eEEEEEcCCCceEEEEEcCCCCEEEEEEeecccCCCccCCCCceeeCCCCCCCcCCChhHHHHHHHHHHHHHHhc--CCC
Q 022949 11 LFLGFDSSTQSLKATVLDSNLNIVASEQLQFDSELPHYKTKDGVYRDPSNNGRIVSPTLMWIEALDLMLQKLSKS--LDL 88 (289)
Q Consensus 11 ~~lgIDiGtt~iK~~l~d~~G~il~~~~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~ 88 (289)
|+||||+|||++|++|+|.+|++++..+.+++...+.+ |++||||+ +||++++++++++.+. ...
T Consensus 3 ~~lgiDiGTts~Ka~l~d~~G~~v~~~~~~~~~~~~~~---g~~eqd~~----------~~~~~~~~~l~~~~~~~~~~~ 69 (504)
T PTZ00294 3 YIGSIDQGTTSTRFIIFDEKGNVVSSHQIPHEQITPHP---GWLEHDPE----------EILRNVYKCMNEAIKKLREKG 69 (504)
T ss_pred EEEEEecCCCceEEEEECCCCCEEEEEEEeecccCCCC---CeEeeCHH----------HHHHHHHHHHHHHHHHcCCCC
Confidence 89999999999999999999999999999998766665 57888888 9999999999887654 234
Q ss_pred C--CEeEEEeccCceeeEEecC-CCcccccCCCCCCCccccccccCCCCCCCeeccCCcHHHHHHHHHHhCChHHHHHHH
Q 022949 89 S--KVTAVSGSGQQHGSVYWKK-GSATILSSLDPKKPLVDQLGDAFSTKESPVWMDSSTTAQCREIEKAVGGALELSKLT 165 (289)
Q Consensus 89 ~--~I~aIgis~~~~~~v~~d~-~g~~~~~~~~~~~~l~~~l~~~~~l~~~i~w~D~Ra~~~~~~~~~~~~~~~~~~~~t 165 (289)
. +|.+||+|+|+++++++|+ +|+| ++|+|+|+|.|+.++++++.+.++..+.++++|
T Consensus 70 ~~~~I~aIgis~q~~~~v~~D~~~g~p--------------------l~~~i~w~D~R~~~~~~~l~~~~~~~~~~~~~t 129 (504)
T PTZ00294 70 PSFKIKAIGITNQRETVVAWDKVTGKP--------------------LYNAIVWLDTRTYDIVNELTKKYGGSNFFQKIT 129 (504)
T ss_pred ccCceEEEEeecCcceEEEEECCCCCC--------------------cccceeecchhhHHHHHHHHhhcCcchHHHHhh
Confidence 3 7999999999999999987 5887 589999999999999999998864225677999
Q ss_pred CCCCCCCChHHHHHHHHhcCcchHhhccc----ccccchhHHHHhhC--CcceecccccccccccccCCCCCcHHHHHHc
Q 022949 166 GSRGYERFTGPQIRKLFQTQPGVYDDTER----ISVVSSFMASLLIG--AYACIDETDAAGMNLMDIRQRVWSKIVLEAT 239 (289)
Q Consensus 166 G~~~~~~~~~~kl~wl~~~~pe~~~~~~~----~~~~~d~l~~~LtG--~~~~~d~s~As~tgl~d~~~~~W~~~ll~~~ 239 (289)
|+++++.++++||+|+++|+|++|+++++ +++++|||.|+||| +.. +|+|+|++||+||+++++|++++++.+
T Consensus 130 G~~~~~~~~~~kl~wl~~~~P~~~~~~~~~~~~~~~~~dyl~~~LTG~~~~~-~d~s~As~tgl~D~~~~~W~~~ll~~~ 208 (504)
T PTZ00294 130 GLPISTYFSAFKIRWMLENVPAVKDAVKEGTLLFGTIDTWLIWNLTGGKSHV-TDVTNASRTFLMNIKTLKWDEELLNKF 208 (504)
T ss_pred CCcCCccchHHHHHHHHhcCHHHHHhhhcCCeEEEcHHHHHHHHhcCCceEE-EEhhhhHHhhccCcccCccCHHHHHHh
Confidence 99999999999999999999999997665 88999999999999 776 999999999999999999999999999
Q ss_pred CCChhhhcCCcccCCccceecCHHHHHHcCCCCCCeEEEccchhhhcCCC
Q 022949 240 APSLEEKLGKLAPAHAVAGCIAPYFVERFHFNKNCLVVQWSGDNPNSLAG 289 (289)
Q Consensus 240 g~~~~~~LP~v~~~g~~~G~v~~~~a~~~GL~~g~pV~~g~~D~~aa~~G 289 (289)
|++ .++||+|+++++++|+|++ +.+|+++|+||++|++|++|+++|
T Consensus 209 gi~-~~~LP~v~~~~~~~G~l~~---~~~~~~~g~pV~~g~~D~~aa~~G 254 (504)
T PTZ00294 209 GIP-KETLPEIKSSSENFGTISG---EAVPLLEGVPITGCIGDQQAALIG 254 (504)
T ss_pred CCC-HHHCCCccCCccccCccch---hhcCCCCCCcEEEEecHHHHHHHh
Confidence 998 7999999999999999994 567889999999999999999886
No 10
>PRK00047 glpK glycerol kinase; Provisional
Probab=100.00 E-value=1.2e-51 Score=400.34 Aligned_cols=243 Identities=23% Similarity=0.353 Sum_probs=219.6
Q ss_pred CCCceEEEEEcCCCceEEEEEcCCCCEEEEEEeecccCCCccCCCCceeeCCCCCCCcCCChhHHHHHHHHHHHHHHhc-
Q 022949 7 PKDSLFLGFDSSTQSLKATVLDSNLNIVASEQLQFDSELPHYKTKDGVYRDPSNNGRIVSPTLMWIEALDLMLQKLSKS- 85 (289)
Q Consensus 7 ~~~~~~lgIDiGtt~iK~~l~d~~G~il~~~~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~- 85 (289)
|+++|+||||+|||++|++|+|.+|++++..+.+|+..+|.+ |++||||+ .||+.++++++++.+.
T Consensus 2 ~m~~~~lgiD~GTts~Ka~l~d~~g~~~~~~~~~~~~~~~~~---g~~e~d~~----------~~~~~~~~~~~~~~~~~ 68 (498)
T PRK00047 2 MMKKYILALDQGTTSSRAIIFDHDGNIVSVAQKEFTQIFPQP---GWVEHDPN----------EIWASQLSVIAEALAKA 68 (498)
T ss_pred CccCEEEEEecCCCceEEEEECCCCCEEEEEeeeccccCCCC---CeEeeCHH----------HHHHHHHHHHHHHHHHc
Confidence 456799999999999999999999999999999998777765 57888888 9999999999988753
Q ss_pred -CCCCCEeEEEeccCceeeEEecCC-CcccccCCCCCCCccccccccCCCCCCCeeccCCcHHHHHHHHHHhCChHHHHH
Q 022949 86 -LDLSKVTAVSGSGQQHGSVYWKKG-SATILSSLDPKKPLVDQLGDAFSTKESPVWMDSSTTAQCREIEKAVGGALELSK 163 (289)
Q Consensus 86 -~~~~~I~aIgis~~~~~~v~~d~~-g~~~~~~~~~~~~l~~~l~~~~~l~~~i~w~D~Ra~~~~~~~~~~~~~~~~~~~ 163 (289)
.+..+|.+||+++|+++++++|++ |+| ++|+|+|+|.|+.++++++.+. +..+++++
T Consensus 69 ~~~~~~I~~Igis~~~~~~v~~D~~~G~p--------------------l~~~i~w~D~Ra~~~~~~l~~~-~~~~~~~~ 127 (498)
T PRK00047 69 GISPDQIAAIGITNQRETTVVWDKETGRP--------------------IYNAIVWQDRRTADICEELKRD-GYEDYIRE 127 (498)
T ss_pred CCChhHeeEEEEecCcceEEEEECCCCcC--------------------CcccceecccchHHHHHHHHhc-cchhhHHH
Confidence 456789999999999999999965 987 5899999999999999999876 33456999
Q ss_pred HHCCCCCCCChHHHHHHHHhcCcchHhhccc----ccccchhHHHHhhCC--cceecccccccccccccCCCCCcHHHHH
Q 022949 164 LTGSRGYERFTGPQIRKLFQTQPGVYDDTER----ISVVSSFMASLLIGA--YACIDETDAAGMNLMDIRQRVWSKIVLE 237 (289)
Q Consensus 164 ~tG~~~~~~~~~~kl~wl~~~~pe~~~~~~~----~~~~~d~l~~~LtG~--~~~~d~s~As~tgl~d~~~~~W~~~ll~ 237 (289)
+||+++++.++++||+|+++|+||+|+++.+ +++++|||.|+|||. .. +|+|+|++|++||+++++|++++++
T Consensus 128 ~tG~~~~~~~~~~kl~Wl~~~~p~~~~~~~~~~~~~~~~~dyl~~~LTG~~~~~-~d~s~As~t~l~d~~~~~W~~ell~ 206 (498)
T PRK00047 128 KTGLVIDPYFSGTKIKWILDNVEGARERAEKGELLFGTIDTWLVWKLTGGKVHV-TDYTNASRTMLFNIHTLDWDDELLE 206 (498)
T ss_pred hhCCCCCccchHHHHHHHHHcCHhHHHHHhcCCeEEeChHHhHhhhhcCCCeeE-eechHHhhhhccccccCccCHHHHH
Confidence 9999999999999999999999999877754 778999999999975 45 9999999999999999999999999
Q ss_pred HcCCChhhhcCCcccCCccceecCHHHHHHcCCCCCCeEEEccchhhhcCCC
Q 022949 238 ATAPSLEEKLGKLAPAHAVAGCIAPYFVERFHFNKNCLVVQWSGDNPNSLAG 289 (289)
Q Consensus 238 ~~g~~~~~~LP~v~~~g~~~G~v~~~~a~~~GL~~g~pV~~g~~D~~aa~~G 289 (289)
.+|++ .++||+|+++++++|+|+++ +|+++||||++|++|++|+++|
T Consensus 207 ~~gi~-~~~lP~i~~~g~~~G~v~~~----~~l~~g~pV~~g~~D~~aa~~G 253 (498)
T PRK00047 207 LLDIP-RSMLPEVRPSSEVYGKTNPY----GFFGGEVPIAGIAGDQQAALFG 253 (498)
T ss_pred hcCCC-HHHCCCccCCcccccccccc----ccCCCCceEEEEccHHHHHHHh
Confidence 99998 79999999999999999987 6777999999999999999886
No 11
>PLN02295 glycerol kinase
Probab=100.00 E-value=1.1e-51 Score=401.77 Aligned_cols=239 Identities=24% Similarity=0.331 Sum_probs=215.9
Q ss_pred eEEEEEcCCCceEEEEEcCCCCEEEEEEeecccCCCccCCCCceeeCCCCCCCcCCChhHHHHHHHHHHHHHHhc--CCC
Q 022949 11 LFLGFDSSTQSLKATVLDSNLNIVASEQLQFDSELPHYKTKDGVYRDPSNNGRIVSPTLMWIEALDLMLQKLSKS--LDL 88 (289)
Q Consensus 11 ~~lgIDiGtt~iK~~l~d~~G~il~~~~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~ 88 (289)
|+||||+|||++|++|||.+|++++..+.+++..+|++ ||+||||+ +||++++++++++.+. .++
T Consensus 1 ~vlgID~GTts~Ka~l~d~~G~~~~~~~~~~~~~~~~~---G~~Eqdp~----------~~w~~~~~~i~~~~~~~~~~~ 67 (512)
T PLN02295 1 FVGAIDQGTTSTRFIIYDRDARPVASHQVEFTQIYPQA---GWVEHDPM----------EILESVLTCIAKALEKAAAKG 67 (512)
T ss_pred CEEEEecCCCceEEEEECCCCCEEEEEeecccccCCCC---CcEeeCHH----------HHHHHHHHHHHHHHHHcCCCc
Confidence 58999999999999999999999999999998877776 57899998 9999999999987654 344
Q ss_pred CC----EeEEEeccCceeeEEe-cCCCcccccCCCCCCCccccccccCCCCCCCeeccCCcHHHHHHHHHHhCC-hHHHH
Q 022949 89 SK----VTAVSGSGQQHGSVYW-KKGSATILSSLDPKKPLVDQLGDAFSTKESPVWMDSSTTAQCREIEKAVGG-ALELS 162 (289)
Q Consensus 89 ~~----I~aIgis~~~~~~v~~-d~~g~~~~~~~~~~~~l~~~l~~~~~l~~~i~w~D~Ra~~~~~~~~~~~~~-~~~~~ 162 (289)
.+ |.+||+++|++++++| |++|+| ++|+|+|+|.|+.++++++++.+++ .+.++
T Consensus 68 ~~i~~~i~aIg~s~q~~~~v~~dd~~G~p--------------------l~~~i~w~D~Ra~~~~~~l~~~~~~~~~~~~ 127 (512)
T PLN02295 68 HNVDSGLKAIGITNQRETTVAWSKSTGRP--------------------LYNAIVWMDSRTSSICRRLEKELSGGRKHFV 127 (512)
T ss_pred cccccceEEEEEecCcceEEEEECCCCCC--------------------cccceeccccchHHHHHHHHhhccchhHHHH
Confidence 45 8999999999999999 589997 5899999999999999999987632 34667
Q ss_pred HHHCCCCCCCChHHHHHHHHhcCcchHhhc----ccccccchhHHHHhhC-----CcceecccccccccccccCCCCCcH
Q 022949 163 KLTGSRGYERFTGPQIRKLFQTQPGVYDDT----ERISVVSSFMASLLIG-----AYACIDETDAAGMNLMDIRQRVWSK 233 (289)
Q Consensus 163 ~~tG~~~~~~~~~~kl~wl~~~~pe~~~~~----~~~~~~~d~l~~~LtG-----~~~~~d~s~As~tgl~d~~~~~W~~ 233 (289)
++||+++++.++++||+|+++|+||+|+|+ .++++++|||.|+||| +.. +|+|+|++|+|||+++++|++
T Consensus 128 ~~tG~~~~~~~~~~kl~Wl~~~~P~~~~~~~~~~~~~~~~~dyl~~~LTG~~~~~~~~-td~s~As~t~l~D~~~~~W~~ 206 (512)
T PLN02295 128 ETCGLPISTYFSATKLLWLLENVDAVKEAVKSGDALFGTIDSWLIWNLTGGASGGVHV-TDVTNASRTMLMNLKTLDWDK 206 (512)
T ss_pred HhhCCcCCcccHHHHHHHHHhcCHHHHHhhhcCceEEEcHHHHHHHHhhCCCCCCeEE-eeHHHhHHhhccCcccCcCCH
Confidence 999999999999999999999999999654 4899999999999999 455 999999999999999999999
Q ss_pred HHHHHcCCChhhhcCCcccCCccceecCHHHHHHcCCCCCCeEEEccchhhhcCCC
Q 022949 234 IVLEATAPSLEEKLGKLAPAHAVAGCIAPYFVERFHFNKNCLVVQWSGDNPNSLAG 289 (289)
Q Consensus 234 ~ll~~~g~~~~~~LP~v~~~g~~~G~v~~~~a~~~GL~~g~pV~~g~~D~~aa~~G 289 (289)
++++.+|++ .++||+|+++++++|+|++++++ +|+||++|++|++|+++|
T Consensus 207 ell~~~gi~-~~~lP~l~~~~~~~G~v~~~~a~-----~g~pV~~g~~D~~aa~~G 256 (512)
T PLN02295 207 PTLEALGIP-AEILPKIVSNSEVIGTIAKGWPL-----AGVPIAGCLGDQHAAMLG 256 (512)
T ss_pred HHHHHcCCC-HHHCCCcccCccceecccccccc-----CCCcEEEEechHHHHHhh
Confidence 999999998 79999999999999999998764 489999999999999986
No 12
>TIGR01311 glycerol_kin glycerol kinase. This model describes glycerol kinase, a member of the FGGY family of carbohydrate kinases.
Probab=100.00 E-value=2.3e-50 Score=390.87 Aligned_cols=239 Identities=24% Similarity=0.336 Sum_probs=219.4
Q ss_pred ceEEEEEcCCCceEEEEEcCCCCEEEEEEeecccCCCccCCCCceeeCCCCCCCcCCChhHHHHHHHHHHHHHHhc--CC
Q 022949 10 SLFLGFDSSTQSLKATVLDSNLNIVASEQLQFDSELPHYKTKDGVYRDPSNNGRIVSPTLMWIEALDLMLQKLSKS--LD 87 (289)
Q Consensus 10 ~~~lgIDiGtt~iK~~l~d~~G~il~~~~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~~ 87 (289)
+|+||||+|||++|++|+|.+|++++..+.+++..+|.+ |++||||+ +||+.+.++++.+.+. .+
T Consensus 1 ~~~lgiDiGtt~iKa~l~d~~g~~l~~~~~~~~~~~~~~---g~~e~d~~----------~~~~~i~~~i~~~~~~~~~~ 67 (493)
T TIGR01311 1 PYILAIDQGTTSSRAIVFDKDGNIVAIHQKEFTQIFPKP---GWVEHDPM----------EIWESVLSCIAEALAKAGIK 67 (493)
T ss_pred CeEEEEecCCCceEEEEECCCCCEEEEEeeeccccCCCC---CcEeeCHH----------HHHHHHHHHHHHHHHHcCCC
Confidence 579999999999999999999999999999988766765 57888888 9999999999987654 45
Q ss_pred CCCEeEEEeccCceeeEEecCC-CcccccCCCCCCCccccccccCCCCCCCeeccCCcHHHHHHHHHHhCChHHHHHHHC
Q 022949 88 LSKVTAVSGSGQQHGSVYWKKG-SATILSSLDPKKPLVDQLGDAFSTKESPVWMDSSTTAQCREIEKAVGGALELSKLTG 166 (289)
Q Consensus 88 ~~~I~aIgis~~~~~~v~~d~~-g~~~~~~~~~~~~l~~~l~~~~~l~~~i~w~D~Ra~~~~~~~~~~~~~~~~~~~~tG 166 (289)
+.+|.+|||++|+++++++|++ |+| ++|+|+|+|.|+.++++++++.++ .++++++||
T Consensus 68 ~~~i~aIgis~~~~~~v~~D~~~G~~--------------------l~p~i~w~D~R~~~~~~~l~~~~~-~~~~~~~tG 126 (493)
T TIGR01311 68 PDDIAAIGITNQRETTVVWDKATGKP--------------------LYNAIVWQDRRTASICEELKAEGY-GEFIREKTG 126 (493)
T ss_pred hhheeEEEEecCcceEEEEECCCCcC--------------------cccceeecccchHHHHHHHHHhcc-hHHHHHHhC
Confidence 6789999999999999999976 987 589999999999999999998874 478999999
Q ss_pred CCCCCCChHHHHHHHHhcCcchHhhccc----ccccchhHHHHhhC--CcceecccccccccccccCCCCCcHHHHHHcC
Q 022949 167 SRGYERFTGPQIRKLFQTQPGVYDDTER----ISVVSSFMASLLIG--AYACIDETDAAGMNLMDIRQRVWSKIVLEATA 240 (289)
Q Consensus 167 ~~~~~~~~~~kl~wl~~~~pe~~~~~~~----~~~~~d~l~~~LtG--~~~~~d~s~As~tgl~d~~~~~W~~~ll~~~g 240 (289)
+++++.++++||+|+++|+||+|+++++ +++++|||.|+||| +.. +|+|+|++|+|||++++.|++++++.+|
T Consensus 127 ~~~~~~~~~~kl~wlk~~~Pe~~~~~~~~~~~~~~~~dyl~~~LtG~~~~~-~d~s~As~t~l~d~~~~~W~~~~l~~~g 205 (493)
T TIGR01311 127 LPLDPYFSATKLRWLLDNVPGVREAAERGELLFGTIDTWLIWNLTGGKVHV-TDVTNASRTMLFNIHTLDWDDELLELFG 205 (493)
T ss_pred CcCCccchHHHHHHHHhcCHHHHHHhhcCCeEEECHhHhhhhhccCCceEE-eccchhhhhhcccccccccCHHHHHHcC
Confidence 9999999999999999999999998864 77899999999999 776 9999999999999999999999999999
Q ss_pred CChhhhcCCcccCCccceecCHHHHHHcCCCCCCeEEEccchhhhcCCC
Q 022949 241 PSLEEKLGKLAPAHAVAGCIAPYFVERFHFNKNCLVVQWSGDNPNSLAG 289 (289)
Q Consensus 241 ~~~~~~LP~v~~~g~~~G~v~~~~a~~~GL~~g~pV~~g~~D~~aa~~G 289 (289)
++ +++||+|+++++++|+++++ |+++|+||++|++|++|+++|
T Consensus 206 i~-~~~lP~l~~~g~~~G~v~~~-----~l~~g~pV~~g~~D~~aa~~G 248 (493)
T TIGR01311 206 IP-REILPEVRSSSEVYGYTDPG-----LLGAEIPITGVLGDQQAALFG 248 (493)
T ss_pred CC-HHHCCCccCCccceeccccc-----ccCCCceEEEecccHHHHHhh
Confidence 98 79999999999999999987 777999999999999999886
No 13
>TIGR01315 5C_CHO_kinase FGGY-family pentulose kinase. This model represents a subfamily of the FGGY family of carbohydrate kinases. This subfamily is closely related to a set of ribulose kinases, and many members are designated ribitol kinase. However, the member from Klebsiella pneumoniae, from a ribitol catabolism operon, accepts D-ribulose and to a lesser extent D-arabinitol and ribitol (PubMed:9639934 and JW Lengeler, personal communication); its annotation in GenBank as ribitol kinase is imprecise and may have affected public annotation of related proteins.
Probab=100.00 E-value=1.2e-50 Score=396.65 Aligned_cols=249 Identities=14% Similarity=0.125 Sum_probs=220.6
Q ss_pred eEEEEEcCCCceEEEEEcCCCCEEEEEEeecccCCCccCCCCceeeCCCCCCCcCCChhHHHHHHHHHHHHHHhc--CCC
Q 022949 11 LFLGFDSSTQSLKATVLDSNLNIVASEQLQFDSELPHYKTKDGVYRDPSNNGRIVSPTLMWIEALDLMLQKLSKS--LDL 88 (289)
Q Consensus 11 ~~lgIDiGtt~iK~~l~d~~G~il~~~~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~ 88 (289)
++||||+|||++|++|+|.+|++++..+.+++..+|.+ |++||||+ +||+.+.++++++.+. .+.
T Consensus 1 ~~lgID~GTts~Ka~l~d~~G~i~~~~~~~~~~~~~~~---g~~eqdp~----------~~~~~~~~~i~~~~~~~~~~~ 67 (541)
T TIGR01315 1 HYIGVDVGTGSARACIIDSTGDILALAAQNIKTWTPSS---GLEGQSSV----------YIWQAICNCVKQVLAESKVDP 67 (541)
T ss_pred CEEEEEecCcCEEEEEEcCCCCEEEEEEeeeeeccCCC---CcccCCHH----------HHHHHHHHHHHHHHHHcCCCh
Confidence 47999999999999999999999999999888767765 46888888 9999999999987654 455
Q ss_pred CCEeEEEeccCceeeEEecCCCcccccCCCCCCCccccccccCCCCCCCeeccCCcHHHHHHHHHHhCChHHHHHHHCCC
Q 022949 89 SKVTAVSGSGQQHGSVYWKKGSATILSSLDPKKPLVDQLGDAFSTKESPVWMDSSTTAQCREIEKAVGGALELSKLTGSR 168 (289)
Q Consensus 89 ~~I~aIgis~~~~~~v~~d~~g~~~~~~~~~~~~l~~~l~~~~~l~~~i~w~D~Ra~~~~~~~~~~~~~~~~~~~~tG~~ 168 (289)
.+|.+|||++| +++++||++|+|+..+.+. .+ .+|+|+|+|.|+.++++++++.. ++++++||++
T Consensus 68 ~~I~~Igis~~-~s~v~~D~~g~pl~~~~~~-~~----------~~~~i~W~D~Ra~~~~~~l~~~~---~~~~~~tG~~ 132 (541)
T TIGR01315 68 NSVKGIGFDAT-CSLVVLTHDGEPLPVSKNG-GA----------DQNIILWMDHRALAEAEKINATN---HNLLRYVGGK 132 (541)
T ss_pred hheEEEEeccc-ccceEEcCCCCeeecCCCC-Cc----------ccceeEeecCcHHHHHHHHHHHH---HHHHHHhCCe
Confidence 68999999999 8999999999984111111 01 27999999999999999998652 4789999999
Q ss_pred CCCCChHHHHHHHHhcCcchHhhcccccccchhHHHHhhCCcceecccccccccccc---cCCCCCcHHHHHHcCCChh-
Q 022949 169 GYERFTGPQIRKLFQTQPGVYDDTERISVVSSFMASLLIGAYACIDETDAAGMNLMD---IRQRVWSKIVLEATAPSLE- 244 (289)
Q Consensus 169 ~~~~~~~~kl~wl~~~~pe~~~~~~~~~~~~d~l~~~LtG~~~~~d~s~As~tgl~d---~~~~~W~~~ll~~~g~~~~- 244 (289)
+++.++++||+|+++|+||+++|+++|++++|||.|+|||+.. +|+++++.+++|| +++++||+++++.+|++ .
T Consensus 133 ~~~~~~~~kl~Wl~~~~Pe~~~~~~~~l~~~dyl~~~LTG~~~-~d~~~as~~~~~d~~d~~~~~W~~ell~~~Gi~-~~ 210 (541)
T TIGR01315 133 MSVEMEIPKVLWLKNNMPPELFARCKFFDLTDFLTWRATGKEI-RSFCSVVCKWGFVPVDGSNKGWQEDFYETIGLG-EL 210 (541)
T ss_pred eCcchhHHHHHHHHHhChHHHHHhhhhcchhhhheeeeecchh-HhHhHHhHhhhccccccccCCCCHHHHHHcCCh-hh
Confidence 9999999999999999999999999999999999999999987 9999999888898 69999999999999985 3
Q ss_pred --hh----cCCcccCCcccee-cCHHHHHHcCCCCCCeEEEccchhhhcCCC
Q 022949 245 --EK----LGKLAPAHAVAGC-IAPYFVERFHFNKNCLVVQWSGDNPNSLAG 289 (289)
Q Consensus 245 --~~----LP~v~~~g~~~G~-v~~~~a~~~GL~~g~pV~~g~~D~~aa~~G 289 (289)
+. ||+++++++++|+ |++++|+++||++|+||++|++|++|+++|
T Consensus 211 ~~~~l~~~lp~i~~~~~~~G~~v~~~~A~~~GL~~g~pV~~g~~D~~aa~lG 262 (541)
T TIGR01315 211 VTDNFIRMGGSWMSPGELVGGGLTAEAAQELGLPAGTAVGSGLIDAHAGWIG 262 (541)
T ss_pred hhccccccCCcccCCCcccccccCHHHHHHhCCCCCCeEeechHhhhccccc
Confidence 22 4999999999999 999999999999999999999999999987
No 14
>PRK04123 ribulokinase; Provisional
Probab=100.00 E-value=6.6e-50 Score=392.25 Aligned_cols=256 Identities=15% Similarity=0.172 Sum_probs=219.7
Q ss_pred CceEEEEEcCCCceEEEEEcC-CCCEEEEEEeecccC------CCccCCCCceeeCCCCCCCcCCChhHHHHHHHHHHHH
Q 022949 9 DSLFLGFDSSTQSLKATVLDS-NLNIVASEQLQFDSE------LPHYKTKDGVYRDPSNNGRIVSPTLMWIEALDLMLQK 81 (289)
Q Consensus 9 ~~~~lgIDiGtt~iK~~l~d~-~G~il~~~~~~~~~~------~~~~~~~g~~e~d~~~~~~~~~~~~~~~~~~~~~~~~ 81 (289)
.+|+||||+|||++|++|+|. +|+++++.+.+|+.. +|.+ |++||||+ +||+++++++++
T Consensus 2 ~~~~lgiD~GTts~Ka~l~d~~~g~~~~~~~~~~~~~~~~~~~~~~~---g~~Eqdp~----------~~w~~~~~~i~~ 68 (548)
T PRK04123 2 MAYVIGLDFGTDSVRALLVDCATGEELATAVVEYPHWVKGRYLDLPP---NQALQHPL----------DYIESLEAAIPA 68 (548)
T ss_pred CcEEEEEecCCCceEEEEEECCCCcEeEEEEeeccccccccccCCCC---CceeeCHH----------HHHHHHHHHHHH
Confidence 358999999999999999995 999999999998743 2443 45666666 999999999998
Q ss_pred HHhc--CCCCCEeEEEeccCceeeEEecCCCcccccCCC-CCCCccccccccCCCCCCCeeccCCcHHHHHHHHHHhC-C
Q 022949 82 LSKS--LDLSKVTAVSGSGQQHGSVYWKKGSATILSSLD-PKKPLVDQLGDAFSTKESPVWMDSSTTAQCREIEKAVG-G 157 (289)
Q Consensus 82 l~~~--~~~~~I~aIgis~~~~~~v~~d~~g~~~~~~~~-~~~~l~~~l~~~~~l~~~i~w~D~Ra~~~~~~~~~~~~-~ 157 (289)
+.+. ....+|.+||||+|+++++++|++|+|+....+ .+.| ..|+|+|+|.|+.++++++++..+ .
T Consensus 69 ~~~~~~~~~~~I~aIgis~~~~~~v~~D~~G~pl~~~~~~~~~p----------~~~~i~W~D~Ra~~~~~~l~~~~~~~ 138 (548)
T PRK04123 69 VLKEAGVDPAAVVGIGVDFTGSTPAPVDADGTPLALLPEFAENP----------HAMVKLWKDHTAQEEAEEINRLAHER 138 (548)
T ss_pred HHHHcCCChhhEEEEEEecccceeEEECCCCCEeecccccccCc----------ccceeEeccCCHHHHHHHHHHHhccc
Confidence 6643 455679999999999999999999998410000 0111 248999999999999999998753 1
Q ss_pred hHHHHHHH-CCCCCCCChHHHHHHHHhcCcchHhhcccccccchhHHHHhhC-----CcceecccccccccccccC-CCC
Q 022949 158 ALELSKLT-GSRGYERFTGPQIRKLFQTQPGVYDDTERISVVSSFMASLLIG-----AYACIDETDAAGMNLMDIR-QRV 230 (289)
Q Consensus 158 ~~~~~~~t-G~~~~~~~~~~kl~wl~~~~pe~~~~~~~~~~~~d~l~~~LtG-----~~~~~d~s~As~tgl~d~~-~~~ 230 (289)
.+++++++ |..+++.++++||+|+++|+|++++|+++|++++|||.|+||| +.. +|.+.++.+++||.+ ++.
T Consensus 139 ~~~~~~~~~g~~~~~~~~~~kl~Wl~~~~P~~~~~~~~~l~~~dyl~~~LTG~~~~~~~~-~~~~~as~~~~~d~~~~~~ 217 (548)
T PRK04123 139 GEADLSRYIGGIYSSEWFWAKILHVLREDPAVYEAAASWVEACDWVVALLTGTTDPQDIV-RSRCAAGHKALWHESWGGL 217 (548)
T ss_pred hhhHHHHhcCCccCcchHHHHHHHHHhhCHHHHHHHhHhccHHHHHHHHHhCCCCccccc-cchhhcccccccccccCCC
Confidence 25678655 9999999999999999999999999999999999999999999 555 899999999999999 566
Q ss_pred CcHHHHHHcC------CChhhhcCCcccCCccceecCHHHHHHcCCCCCCeEEEccchhhhcCCC
Q 022949 231 WSKIVLEATA------PSLEEKLGKLAPAHAVAGCIAPYFVERFHFNKNCLVVQWSGDNPNSLAG 289 (289)
Q Consensus 231 W~~~ll~~~g------~~~~~~LP~v~~~g~~~G~v~~~~a~~~GL~~g~pV~~g~~D~~aa~~G 289 (289)
||+++|+.+| ++ .++||+|+++++++|+|++++|+++||++|+||++|+||++|+++|
T Consensus 218 ~s~ell~~~g~~l~~~i~-~~llP~l~~~g~~~G~v~~~~a~~~GL~~g~pV~~g~~D~~aa~~G 281 (548)
T PRK04123 218 PSADFFDALDPLLARGLR-DKLFTETWTAGEPAGTLTAEWAQRLGLPEGVAVSVGAFDAHMGAVG 281 (548)
T ss_pred CCHHHHHHhccchhhhhH-hhcCCccccCCCcccccCHHHHHHhCCCCCCeEEecchhhhhhhcc
Confidence 6999999997 66 7899999999999999999999999999999999999999999987
No 15
>TIGR01234 L-ribulokinase L-ribulokinase. This enzyme catalyzes the second step in arabinose catabolism. The most closely related protein subfamily outside the scope of this model includes ribitol kinase from E. coli.
Probab=100.00 E-value=5.5e-50 Score=391.72 Aligned_cols=258 Identities=14% Similarity=0.161 Sum_probs=220.6
Q ss_pred ceEEEEEcCCCceEEEEEc-CCCCEEEEEEeeccc-----CCCccCC---CCceeeCCCCCCCcCCChhHHHHHHHHHHH
Q 022949 10 SLFLGFDSSTQSLKATVLD-SNLNIVASEQLQFDS-----ELPHYKT---KDGVYRDPSNNGRIVSPTLMWIEALDLMLQ 80 (289)
Q Consensus 10 ~~~lgIDiGtt~iK~~l~d-~~G~il~~~~~~~~~-----~~~~~~~---~g~~e~d~~~~~~~~~~~~~~~~~~~~~~~ 80 (289)
.|+||||+|||++|++||| .+|++++..+.+++. .+|+++. +|++||||+ +||++++++++
T Consensus 1 ~~~lgiD~GTss~Ka~l~d~~~G~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~Eqdp~----------~~w~~~~~~~~ 70 (536)
T TIGR01234 1 AYAIGVDFGTLSGRALAVDVATGEEIATAVEWYRHWVKGQFLPKTGAKLPNDQALQHPA----------DYIEVLEAAIP 70 (536)
T ss_pred CeEEEEecCCCceEEEEEECCCCcEeeeeeeccccccccccCCCccccCCCCccccCHH----------HHHHHHHHHHH
Confidence 3799999999999999999 899999999999874 3454210 245666666 99999999999
Q ss_pred HHHhc--CCCCCEeEEEeccCceeeEEecCCCccccc-CCCCCCCccccccccCCCCCCCeeccCCcHHHHHHHHHHhC-
Q 022949 81 KLSKS--LDLSKVTAVSGSGQQHGSVYWKKGSATILS-SLDPKKPLVDQLGDAFSTKESPVWMDSSTTAQCREIEKAVG- 156 (289)
Q Consensus 81 ~l~~~--~~~~~I~aIgis~~~~~~v~~d~~g~~~~~-~~~~~~~l~~~l~~~~~l~~~i~w~D~Ra~~~~~~~~~~~~- 156 (289)
++.+. .+..+|++||||+|+++++++|++|+|+.. |.+.+.| ..++|+|+|.|+.++++++++..+
T Consensus 71 ~~~~~~~~~~~~I~aI~~s~q~~s~v~~D~~g~pl~~~~~~~~~~----------~~~~i~W~D~Ra~~~~~~l~~~~~~ 140 (536)
T TIGR01234 71 TVLAELGVDPADVVGIGVDFTACTPAPIDSDGNPLCLLPEFAENP----------HAYFKLWKHHAAQEEADRINRLAHA 140 (536)
T ss_pred HHHHHcCCCHHHEEEEEEecCcceeEEECCCCCEeecccccccCc----------ccceeeeccCCcHHHHHHHHHHhhc
Confidence 88754 445679999999999999999999998410 1000001 123999999999999999998752
Q ss_pred ChHHHHHHHCCCCCCCChHHHHHHHHhcCcchHhhcccccccchhHHHHhhCCcceecccccccccccccCCCCCcHHHH
Q 022949 157 GALELSKLTGSRGYERFTGPQIRKLFQTQPGVYDDTERISVVSSFMASLLIGAYACIDETDAAGMNLMDIRQRVWSKIVL 236 (289)
Q Consensus 157 ~~~~~~~~tG~~~~~~~~~~kl~wl~~~~pe~~~~~~~~~~~~d~l~~~LtG~~~~~d~s~As~tgl~d~~~~~W~~~ll 236 (289)
+.++++++||+++++.++++||+|+++|+||+++++++|++++|||.|+|||+.. +|+|+++.+++++...+.|+++++
T Consensus 141 ~~~~~~~~tG~~~~~~~~~~kl~Wl~~~~pe~~~~~~~~l~~~dyl~~~LTG~~~-~d~s~a~~~~l~~~~w~~~~~~~l 219 (536)
T TIGR01234 141 PGEVDLSRYGGIISSEWFWAKILQITEEDPAIYQAADRWIELADWIVAQLSGDIR-RGRCTAGYKALWHESWGYPSASFF 219 (536)
T ss_pred cchhHHHhhCCccCchhHHHHHHHHHhhChHHHHHHhhhcCHHHHHHHHHhCCcc-ccchhcccceeccccccCCCHHHH
Confidence 1367899999999999999999999999999999999999999999999999987 999999999988876666699999
Q ss_pred HHcCC------ChhhhcCCcccCCccceecCHHHHHHcCCCCCCeEEEccchhhhcCCC
Q 022949 237 EATAP------SLEEKLGKLAPAHAVAGCIAPYFVERFHFNKNCLVVQWSGDNPNSLAG 289 (289)
Q Consensus 237 ~~~g~------~~~~~LP~v~~~g~~~G~v~~~~a~~~GL~~g~pV~~g~~D~~aa~~G 289 (289)
+.+|+ + .++||+|+++++++|.|++++|+++||++|+||++|++|++|+++|
T Consensus 220 ~~~g~~~~~~lp-~~~~p~i~~~g~~~G~v~~~~A~~~GL~~g~pV~~g~~D~~aa~~g 277 (536)
T TIGR01234 220 DELNPILNRHLP-DKLFTDIWTAGEPAGTLTPEWAQRTGLPEGVVVAVGNFDAHVGAVA 277 (536)
T ss_pred HHhcchhhhhhh-hhcCCceecCCCcccccCHHHHHHhCCCCCCeEEecchhHhhhhhc
Confidence 99985 5 6899999999999999999999999999999999999999999986
No 16
>TIGR01312 XylB D-xylulose kinase. D-xylulose kinase (XylB) generally is found with xylose isomerase (XylA) and acts in xylose utilization.
Probab=100.00 E-value=3.8e-49 Score=381.06 Aligned_cols=241 Identities=25% Similarity=0.436 Sum_probs=224.1
Q ss_pred EEEEcCCCceEEEEEcCCCCEEEEEEeecccCCCccCCCCceeeCCCCCCCcCCChhHHHHHHHHHHHHHHhc--CCCCC
Q 022949 13 LGFDSSTQSLKATVLDSNLNIVASEQLQFDSELPHYKTKDGVYRDPSNNGRIVSPTLMWIEALDLMLQKLSKS--LDLSK 90 (289)
Q Consensus 13 lgIDiGtt~iK~~l~d~~G~il~~~~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~ 90 (289)
||||+|||++|++|+|.+|+++.+.+.+++...+.+ |+.+|||+ +||+.+.++++++.+. ....+
T Consensus 1 lgIDiGtt~ik~~l~d~~g~i~~~~~~~~~~~~~~~---g~~e~d~~----------~~~~~l~~~i~~~~~~~~~~~~~ 67 (481)
T TIGR01312 1 LGIDLGTSGVKALLVDEQGEVIASGSAPHTVISPHP---GWSEQDPE----------DWWDATEEAIKELLEQASEMGQD 67 (481)
T ss_pred CceeecCcceEEEEECCCCCEEEEEeecccccCCCC---CCeeeCHH----------HHHHHHHHHHHHHHHhcCCCccc
Confidence 589999999999999999999999999998766665 46778877 9999999999998754 45578
Q ss_pred EeEEEeccCceeeEEecCCCcccccCCCCCCCccccccccCCCCCCCeeccCCcHHHHHHHHHHhCChHHHHHHHCCCCC
Q 022949 91 VTAVSGSGQQHGSVYWKKGSATILSSLDPKKPLVDQLGDAFSTKESPVWMDSSTTAQCREIEKAVGGALELSKLTGSRGY 170 (289)
Q Consensus 91 I~aIgis~~~~~~v~~d~~g~~~~~~~~~~~~l~~~l~~~~~l~~~i~w~D~Ra~~~~~~~~~~~~~~~~~~~~tG~~~~ 170 (289)
|.+||+++|++|+|+||++|++ ++|+++|+|.|+..+++++++.++ .+.+++.+|+...
T Consensus 68 I~gIgvs~~~~g~v~~d~~g~~--------------------l~~~i~W~D~r~~~~~~~l~~~~~-~~~~~~~~g~~~~ 126 (481)
T TIGR01312 68 IKGIGISGQMHGLVLLDANGEV--------------------LRPAILWNDTRTAQECEELEAELG-DERVLEITGNLAL 126 (481)
T ss_pred EEEEEEecCCceeEEECCCcCC--------------------CccchhhhccchHHHHHHHHHhcC-HhHHHHHHCCCCC
Confidence 9999999999999999999987 478899999999999999988874 5788999999999
Q ss_pred CCChHHHHHHHHhcCcchHhhcccccccchhHHHHhhCCcceecccccccccccccCCCCCcHHHHHHcCCChhhhcCCc
Q 022949 171 ERFTGPQIRKLFQTQPGVYDDTERISVVSSFMASLLIGAYACIDETDAAGMNLMDIRQRVWSKIVLEATAPSLEEKLGKL 250 (289)
Q Consensus 171 ~~~~~~kl~wl~~~~pe~~~~~~~~~~~~d~l~~~LtG~~~~~d~s~As~tgl~d~~~~~W~~~ll~~~g~~~~~~LP~v 250 (289)
+.++++||+|+++|+|++++++++|++++|||.|+|||+.. +|+|+|++|||||++++.|++++++.+|++ +++||+|
T Consensus 127 ~~~~~~kl~wl~~~~p~~~~~~~~~~~~~~yi~~~LtG~~~-~d~t~as~tgl~d~~~~~W~~~~l~~~gi~-~~~Lp~i 204 (481)
T TIGR01312 127 PGFTAPKLLWVRKHEPEVFARIAKVMLPKDYLRYRLTGEYV-TEYSDASGTGWFDVAKRAWSKELLDALDLP-ESQLPEL 204 (481)
T ss_pred ccchHHHHHHHHHcChHHHHHhheeeCchHHHhhhhcCCee-eeHHHhhcccccccCCCCCCHHHHHHhCCC-HHHCCCc
Confidence 99999999999999999999999999999999999999986 999999999999999999999999999998 8999999
Q ss_pred ccCCccceecCHHHHHHcCCCCCCeEEEccchhhhcCCC
Q 022949 251 APAHAVAGCIAPYFVERFHFNKNCLVVQWSGDNPNSLAG 289 (289)
Q Consensus 251 ~~~g~~~G~v~~~~a~~~GL~~g~pV~~g~~D~~aa~~G 289 (289)
+++++++|++++++|+++||++|+||++|++|++|+++|
T Consensus 205 v~~~~~~G~v~~~~a~~~Gl~~g~pV~~g~~D~~aa~~g 243 (481)
T TIGR01312 205 IESSEKAGTVRPEVAARLGLSAGVPVAAGGGDNAAGAIG 243 (481)
T ss_pred cCCCCeeeeEcHHHHHHhCCCCCCeEEecchHHHHHhhC
Confidence 999999999999999999999999999999999999986
No 17
>COG0554 GlpK Glycerol kinase [Energy production and conversion]
Probab=100.00 E-value=1.1e-48 Score=362.36 Aligned_cols=242 Identities=23% Similarity=0.363 Sum_probs=219.0
Q ss_pred CceEEEEEcCCCceEEEEEcCCCCEEEEEEeecccCCCccCCCCceeeCCCCCCCcCCChhHHHHHHHHHHHHHHh-c-C
Q 022949 9 DSLFLGFDSSTQSLKATVLDSNLNIVASEQLQFDSELPHYKTKDGVYRDPSNNGRIVSPTLMWIEALDLMLQKLSK-S-L 86 (289)
Q Consensus 9 ~~~~lgIDiGtt~iK~~l~d~~G~il~~~~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~~~~~~~~~~~~~~l~~-~-~ 86 (289)
++|+++||.||||+|+++||.+|++++..+.+++..+|.| ||+||||. ++|+.+..+++.+.. . +
T Consensus 4 ~~yIlAiDqGTTssRaivfd~~g~iva~~q~e~~Q~yP~~---GWVEhDp~----------eIw~~~~~~l~~a~~~~~i 70 (499)
T COG0554 4 DKYILAIDQGTTSSRAIVFDEDGNIVAIAQREFTQIYPQP---GWVEHDPL----------EIWASVRSVLKEALAKAGI 70 (499)
T ss_pred ccEEEEEecCCcceeEEEECCCCCchhhhhhhhhhhCCCC---CccccCHH----------HHHHHHHHHHHHHHHHcCC
Confidence 6899999999999999999999999999999998889998 58999999 999999999987554 4 6
Q ss_pred CCCCEeEEEeccCceeeEEecCCCcccccCCCCCCCccccccccCCCCCCCeeccCCcHHHHHHHHHHhCChHHHHHHHC
Q 022949 87 DLSKVTAVSGSGQQHGSVYWKKGSATILSSLDPKKPLVDQLGDAFSTKESPVWMDSSTTAQCREIEKAVGGALELSKLTG 166 (289)
Q Consensus 87 ~~~~I~aIgis~~~~~~v~~d~~g~~~~~~~~~~~~l~~~l~~~~~l~~~i~w~D~Ra~~~~~~~~~~~~~~~~~~~~tG 166 (289)
.+.+|.+|||+.|+++.|+||++.+. | ++|+|+|+|.|+.+.|+++++. +..+.+.+.||
T Consensus 71 ~~~~iaaIGITNQRETtvvWdk~tG~---------P----------i~naIvWQdrRTa~~c~~L~~~-g~~~~i~~kTG 130 (499)
T COG0554 71 KPGEIAAIGITNQRETTVVWDKETGK---------P----------IYNAIVWQDRRTADICEELKAD-GYEERIREKTG 130 (499)
T ss_pred CccceEEEEeeccceeEEEEeCCCCC---------C----------cccceeeeccchHHHHHHHHhc-chhhhhhhhcC
Confidence 78899999999999999999996553 3 5899999999999999999998 44578889999
Q ss_pred CCCCCCChHHHHHHHHhcCcchHhhccc----ccccchhHHHHhhC-CcceecccccccccccccCCCCCcHHHHHHcCC
Q 022949 167 SRGYERFTGPQIRKLFQTQPGVYDDTER----ISVVSSFMASLLIG-AYACIDETDAAGMNLMDIRQRVWSKIVLEATAP 241 (289)
Q Consensus 167 ~~~~~~~~~~kl~wl~~~~pe~~~~~~~----~~~~~d~l~~~LtG-~~~~~d~s~As~tgl~d~~~~~W~~~ll~~~g~ 241 (289)
..+.|+|+..|+.|+.+|.|...+|+++ |.++..||.|+||| +.+++|+||||+|+|||+++.+||+++|+.||+
T Consensus 131 L~~dpYFSatKi~WiLdnv~g~r~~ae~Gel~fGTiDtWLiw~LTgg~~h~TD~sNASRT~L~ni~~l~WD~elL~il~I 210 (499)
T COG0554 131 LVLDPYFSATKIKWILDNVPGARERAEKGELLFGTIDTWLIWKLTGGKVHVTDYSNASRTMLFNIHSLEWDDELLELLGI 210 (499)
T ss_pred CccCCCccchhhhHHHhhChhhhhHhhcCCeEEecchhhheeeccCCceeccccchhHHHhcccccccCCCHHHHHHhCC
Confidence 9999999999999999999988888754 78899999999998 344599999999999999999999999999998
Q ss_pred ChhhhcCCcccCCccceecCHHHHHHcCCCCCCeEEEccchhhhcCCC
Q 022949 242 SLEEKLGKLAPAHAVAGCIAPYFVERFHFNKNCLVVQWSGDNPNSLAG 289 (289)
Q Consensus 242 ~~~~~LP~v~~~g~~~G~v~~~~a~~~GL~~g~pV~~g~~D~~aa~~G 289 (289)
+ .++||+|+++.++.|.+.. -.+...+||..-.||||||+||
T Consensus 211 p-~~~LPev~~ss~~~G~t~~-----~~~g~~vPI~g~~GDQQAALfG 252 (499)
T COG0554 211 P-RSMLPEVRPSSEIYGVTGI-----GFLGAEVPITGVAGDQQAALFG 252 (499)
T ss_pred C-hHhCccccccccccccccc-----cccCCceeeccccchhHHHHhh
Confidence 8 8999999999999998865 2234679999999999999997
No 18
>TIGR02627 rhamnulo_kin rhamnulokinase. This model describes rhamnulokinase, an enzyme that catalyzes the second step in rhamnose catabolism.
Probab=100.00 E-value=5.9e-48 Score=370.52 Aligned_cols=233 Identities=14% Similarity=0.132 Sum_probs=208.1
Q ss_pred EEEEcCCCceEEEEEcCC---CCEE-EEEEeecccCCCccCCCCceeeCCCCCCCcCCChhHHHHHHHHHHHHHHhcCCC
Q 022949 13 LGFDSSTQSLKATVLDSN---LNIV-ASEQLQFDSELPHYKTKDGVYRDPSNNGRIVSPTLMWIEALDLMLQKLSKSLDL 88 (289)
Q Consensus 13 lgIDiGtt~iK~~l~d~~---G~il-~~~~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 88 (289)
+|||+|||++|++|+|.+ |+++ .....+++...+++ ++.++||+ .||+.+.++++++... .
T Consensus 1 ~aiD~Gtt~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~d~~----------~~~~~~~~~l~~~~~~--~ 65 (454)
T TIGR02627 1 VAVDLGASSGRVMLASYENECQKLTLEEIHRFKNGLVSQN---GHECWDID----------ALEQEIRLGLNKVDAE--G 65 (454)
T ss_pred CcEeccCCchheEEEEEcCCCceEEEEEEEeCCCCCEeEC---CEEEEehH----------HHHHHHHHHHHHHhcc--C
Confidence 589999999999999987 5666 56666655444443 45666666 9999999999988653 3
Q ss_pred CCEeEEEeccCceeeEEecCCCcccccCCCCCCCccccccccCCCCCCCeeccCCcHHHHHHHHHHhCChHHHHHHHCCC
Q 022949 89 SKVTAVSGSGQQHGSVYWKKGSATILSSLDPKKPLVDQLGDAFSTKESPVWMDSSTTAQCREIEKAVGGALELSKLTGSR 168 (289)
Q Consensus 89 ~~I~aIgis~~~~~~v~~d~~g~~~~~~~~~~~~l~~~l~~~~~l~~~i~w~D~Ra~~~~~~~~~~~~~~~~~~~~tG~~ 168 (289)
.+|.+|||++|+++++++|++|+| ++|+|+|+|.|+.++++++++.++ .+++|++||++
T Consensus 66 ~~i~~Igis~q~~~~v~~D~~G~~--------------------l~p~i~w~D~R~~~~~~~l~~~~~-~~~~~~~tG~~ 124 (454)
T TIGR02627 66 IAPDSIGIDTWGVDFVLLDQNGQR--------------------VGDPVSYRDSRTDGVMAQVQSELG-KEAIYQRTGIQ 124 (454)
T ss_pred CCceEEEEeccceeEEEEcCCCCC--------------------ccCceecCCCCCHHHHHHHHhhcC-HHHHHHHhCCC
Confidence 469999999999999999999998 589999999999999999998863 67899999999
Q ss_pred CCCCChHHHHHHHHhcCcchHhhcccccccchhHHHHhhCCcceecccccccccccccCCCCCcHHHHHHcCCChhhhcC
Q 022949 169 GYERFTGPQIRKLFQTQPGVYDDTERISVVSSFMASLLIGAYACIDETDAAGMNLMDIRQRVWSKIVLEATAPSLEEKLG 248 (289)
Q Consensus 169 ~~~~~~~~kl~wl~~~~pe~~~~~~~~~~~~d~l~~~LtG~~~~~d~s~As~tgl~d~~~~~W~~~ll~~~g~~~~~~LP 248 (289)
+.+.++++||+|+++|+|++|+|+++|++++|||.|+|||+.. +|+|+||+|+|||+++++|++++++.+|++ .++||
T Consensus 125 ~~~~~~~~kl~Wl~~~~P~~~~~~~~~l~~~dyl~~~LTG~~~-~d~s~As~t~l~d~~~~~W~~~ll~~~gi~-~~~lP 202 (454)
T TIGR02627 125 FLPFNTLYQLRALTEQQPDLLEKVAHFLLIPDYLNYRLTGKKV-WEYTNATTTQLVNINTDDWDEDLLAYLGVP-AAWFG 202 (454)
T ss_pred cCCccHHHHHHHHHHhChhHHHHHHHhCCHHHHHHHheeCCce-eeeehhhhcccccCCCCCcCHHHHHHcCCC-HHHcC
Confidence 9999999999999999999999999999999999999999987 999999999999999999999999999998 79999
Q ss_pred CcccCCccceecCHHHHHHcCCCCCCeEEE-ccchhhhcCCC
Q 022949 249 KLAPAHAVAGCIAPYFVERFHFNKNCLVVQ-WSGDNPNSLAG 289 (289)
Q Consensus 249 ~v~~~g~~~G~v~~~~a~~~GL~~g~pV~~-g~~D~~aa~~G 289 (289)
+|+++++++|.+.+ .|+ +|+||++ |+||++|+++|
T Consensus 203 ~l~~~~~~~G~~~~-----~gl-~g~pVv~~g~~D~~aa~~g 238 (454)
T TIGR02627 203 RPTHPGNVIGLWEC-----PQG-NQIPVVAVATHDTASAVVA 238 (454)
T ss_pred CccCCCCeeEEeec-----ccC-CCCCEEEECCchHHHHHhc
Confidence 99999999999864 467 7899998 88999999886
No 19
>COG1069 AraB Ribulose kinase [Energy production and conversion]
Probab=100.00 E-value=2.4e-41 Score=317.62 Aligned_cols=252 Identities=17% Similarity=0.203 Sum_probs=217.2
Q ss_pred CCceEEEEEcCCCceEEEEEcCC-CCEEEEEEeecccCCCccCCCCceeeCCCCCCCcCCChhHHHHHHHHHHHHHHhc-
Q 022949 8 KDSLFLGFDSSTQSLKATVLDSN-LNIVASEQLQFDSELPHYKTKDGVYRDPSNNGRIVSPTLMWIEALDLMLQKLSKS- 85 (289)
Q Consensus 8 ~~~~~lgIDiGtt~iK~~l~d~~-G~il~~~~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~- 85 (289)
+.+|+||||+||.|.|+.+||.+ |++++++.+||+...+.++ ..||+|. +||++++.+++.+.+.
T Consensus 1 ~~~~~iGvDvGTgSaRA~v~D~~~G~~la~a~~p~~~~~~~~~---~~~q~s~----------d~~~av~~aVr~~v~~a 67 (544)
T COG1069 1 MMAYVIGVDVGTGSARAGVFDCQTGTLLARAVRPYPMWQPGSN---LAEQHSR----------DYWEAVCAAVRDVVAKA 67 (544)
T ss_pred CccEEEEEeecCCceeEEEEEcCCCcchhhcccceeccccCcc---ccccCHH----------HHHHHHHHHHHHHHHHc
Confidence 35799999999999999999986 9999999999987666543 4566666 9999999999986654
Q ss_pred -CCCCCEeEEEeccCceeeEEecCCCcccc-cCCCCCCCccccccccCCCCCCCeeccCCcHHHHHHHHHHhCChHHHHH
Q 022949 86 -LDLSKVTAVSGSGQQHGSVYWKKGSATIL-SSLDPKKPLVDQLGDAFSTKESPVWMDSSTTAQCREIEKAVGGALELSK 163 (289)
Q Consensus 86 -~~~~~I~aIgis~~~~~~v~~d~~g~~~~-~~~~~~~~l~~~l~~~~~l~~~i~w~D~Ra~~~~~~~~~~~~~~~~~~~ 163 (289)
+++.+|+||||+++ +|+|++|++|+|+- .+-+++ -.++|+|+|+|+.+++++++... .+++.
T Consensus 68 gv~~~~V~gIGvDaT-cSlvv~d~~g~pl~v~~~~~~------------~~~vilWmDHrA~~EAe~in~~~---~~~L~ 131 (544)
T COG1069 68 GVDPADVVGIGVDAT-CSLVVIDRDGNPLAVLPEFPN------------NPNVILWMDHRAVEEAEEINATC---HPVLD 131 (544)
T ss_pred CCChhHeeEEEEcce-eeeEEECCCCCeeccCCCCCC------------CCceEEeccchHHHHHHHHHhhc---hHHHH
Confidence 78889999999998 99999999999851 111112 13699999999999999999873 56999
Q ss_pred HHCCCCCCCChHHHHHHHHhcCcchHhhcccccccchhHHHHhhCCcceeccccccccccccc-CCCCCcHHHHHHcCCC
Q 022949 164 LTGSRGYERFTGPQIRKLFQTQPGVYDDTERISVVSSFMASLLIGAYACIDETDAAGMNLMDI-RQRVWSKIVLEATAPS 242 (289)
Q Consensus 164 ~tG~~~~~~~~~~kl~wl~~~~pe~~~~~~~~~~~~d~l~~~LtG~~~~~d~s~As~tgl~d~-~~~~W~~~ll~~~g~~ 242 (289)
+.|..+++++..|||+|+++|.|++|+|+.+|+.+.|||.|+|||....+.+|.-+.+. |.. +++.|++++++.+|++
T Consensus 132 ~~GG~~SpEm~~PKlmwl~~~~p~~~~~a~~~fdl~D~l~~~ltG~~~Rs~Ct~~~Kw~-~~~~~~~~~~~~~f~~ig~~ 210 (544)
T COG1069 132 YYGGKISPEMMIPKLMWLKREAPAVWERAAHIFDLADWLTWKLTGSIARSRCTAGCKWN-WLEHEGGLWSADFFDKIGLD 210 (544)
T ss_pred hhCCccChhhhHHHHHHHHhhChHHHHHhhhhhhHHHHHHHHhhcchhhccccceeeee-eeccccCCCCHHHHHhcCch
Confidence 99999999999999999999999999999999999999999999986656677666665 666 6667999999999964
Q ss_pred h-h---hhcC-CcccCCccceecCHHHHHHcCCCCCCeEEEccchhhhcCCC
Q 022949 243 L-E---EKLG-KLAPAHAVAGCIAPYFVERFHFNKNCLVVQWSGDNPNSLAG 289 (289)
Q Consensus 243 ~-~---~~LP-~v~~~g~~~G~v~~~~a~~~GL~~g~pV~~g~~D~~aa~~G 289 (289)
. . ..|| ++++.|+.+|.+++++|+++||++||.|..|..|..|+.+|
T Consensus 211 ~l~~~~~~l~~~i~~~g~~vg~Lt~e~A~~lGL~~~~~Vs~g~IDAhag~~G 262 (544)
T COG1069 211 DLRELDSKLPEDIVPAGEPVGGLTPEAAQELGLPEGTVVSAGIIDAHAGAVG 262 (544)
T ss_pred hhhcccccCCcccccCCccccccCHHHHHHhCCCCCcEEeccceeccccccc
Confidence 2 2 3477 79999999999999999999999999999999999999987
No 20
>PRK10640 rhaB rhamnulokinase; Provisional
Probab=100.00 E-value=1.4e-40 Score=320.45 Aligned_cols=195 Identities=16% Similarity=0.155 Sum_probs=178.5
Q ss_pred cCCChhHHHHHHHHHHHHHHhcCCCCCEeEEEeccCceeeEEecCCCcccccCCCCCCCccccccccCCCCCCCeeccCC
Q 022949 64 IVSPTLMWIEALDLMLQKLSKSLDLSKVTAVSGSGQQHGSVYWKKGSATILSSLDPKKPLVDQLGDAFSTKESPVWMDSS 143 (289)
Q Consensus 64 ~~~~~~~~~~~~~~~~~~l~~~~~~~~I~aIgis~~~~~~v~~d~~g~~~~~~~~~~~~l~~~l~~~~~l~~~i~w~D~R 143 (289)
.+||+..|++.+.++++++... ..+|.+||||+|+++++++|++|+| ++|+|+|+|.|
T Consensus 31 ~~~d~~~~~~~i~~~l~~~~~~--~~~I~~Igis~q~~~~v~lD~~G~p--------------------L~pai~w~D~R 88 (471)
T PRK10640 31 DTWDVDSLESAIRLGLNKVCEE--GIRIDSIGIDTWGVDYVLLDKQGQR--------------------VGLPVSYRDSR 88 (471)
T ss_pred eEECHHHHHHHHHHHHHHHhhc--CCCccEEEEcCCcccEEEECCCCCC--------------------cCCceeccCCC
Confidence 3344449999999999887542 4579999999999999999999998 58999999999
Q ss_pred cHHHHHHHHHHhCChHHHHHHHCCCCCCCChHHHHHHHHhcCcchHhhcccccccchhHHHHhhCCcceecccccccccc
Q 022949 144 TTAQCREIEKAVGGALELSKLTGSRGYERFTGPQIRKLFQTQPGVYDDTERISVVSSFMASLLIGAYACIDETDAAGMNL 223 (289)
Q Consensus 144 a~~~~~~~~~~~~~~~~~~~~tG~~~~~~~~~~kl~wl~~~~pe~~~~~~~~~~~~d~l~~~LtG~~~~~d~s~As~tgl 223 (289)
+..+++++.+.++ .+++|++||+++.+.++++||+|+++|+|++|+++++|++++|||.|+|||+.. +|+|+|++|+|
T Consensus 89 a~~~~~~l~~~~~-~~~~~~~tG~~~~~~~~~~kl~Wl~~~~P~~~~~~~~~l~~~dyl~~~LTG~~~-~d~s~as~t~l 166 (471)
T PRK10640 89 TDGVMAQAQQQLG-KRDIYRRSGIQFLPFNTLYQLRALTEQQPELIAQVAHALLIPDYFSYRLTGKMN-WEYTNATTTQL 166 (471)
T ss_pred CHHHHHHHHHhcC-HHHHHHHhCCCCCCccHHHHHHHHHHhChHHHHHhhHeecHHHHHHHHHhCCcc-eeecHhhhccc
Confidence 9999999998874 578999999999999999999999999999999999999999999999999987 99999999999
Q ss_pred cccCCCCCcHHHHHHcCCChhhhcCCcccCCccceecCHHHHHHcCCCCCCeEEE-ccchhhhcCCC
Q 022949 224 MDIRQRVWSKIVLEATAPSLEEKLGKLAPAHAVAGCIAPYFVERFHFNKNCLVVQ-WSGDNPNSLAG 289 (289)
Q Consensus 224 ~d~~~~~W~~~ll~~~g~~~~~~LP~v~~~g~~~G~v~~~~a~~~GL~~g~pV~~-g~~D~~aa~~G 289 (289)
||+++++||+++++.+|++ .++||+|+++++++|.+++++ | .|+||++ |+||++||++|
T Consensus 167 ~d~~~~~W~~ell~~~Gi~-~~~LP~lv~~~~~~G~v~~~~----g--~g~pVv~~g~~D~~aa~~g 226 (471)
T PRK10640 167 VNINSDDWDESLLAWSGAP-KAWFGRPTHPGNVIGHWICPQ----G--NEIPVVAVASHDTASAVIA 226 (471)
T ss_pred cCCCcCCcCHHHHHHcCCC-HHHcCCCcCCCccceeeeccc----C--CCCCEEEeCCCcHHHHhhc
Confidence 9999999999999999998 899999999999999987663 5 6899998 68999999986
No 21
>KOG2531 consensus Sugar (pentulose and hexulose) kinases [Carbohydrate transport and metabolism]
Probab=100.00 E-value=9.6e-39 Score=292.63 Aligned_cols=282 Identities=62% Similarity=1.041 Sum_probs=268.3
Q ss_pred CCCceEEEEEcCCCceEEEEEcCCCCEEEEEEeecccCCCccCCCCceeeCCCCCCCcCCChhHHHHHHHHHHHHHHhc-
Q 022949 7 PKDSLFLGFDSSTQSLKATVLDSNLNIVASEQLQFDSELPHYKTKDGVYRDPSNNGRIVSPTLMWIEALDLMLQKLSKS- 85 (289)
Q Consensus 7 ~~~~~~lgIDiGtt~iK~~l~d~~G~il~~~~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~- 85 (289)
+.++.+||+|++|+.+|++++|.+++|+.++.+.|+...|+.++.+.+..+.. +..+++++.+|.+++.-+++++.++
T Consensus 6 ~~~~~fLG~DlSTQqlKaviids~LnVv~~~~V~Fd~DLpef~T~~GV~~~g~-~~~i~~PV~MWveAlDlll~kl~~~~ 84 (545)
T KOG2531|consen 6 QPDRSFLGFDLSTQQLKAVIIDSNLNVVHTEAVHFDTDLPEFGTKNGVYRNGG-GETITSPVLMWVEALDLLLDKLREAG 84 (545)
T ss_pred CCCceeeeeecccceeEEEEEcCCccEEEEEEEeeccccccccccCceEeCCC-CcEEeccHHHHHHHHHHHHHHHHHcC
Confidence 34567999999999999999999999999999999999999888888988886 6799999999999999999999887
Q ss_pred CCCCCEeEEEeccCceeeEEecCCCcccccCCCCCCCccccccccCCCCCCCeeccCCcHHHHHHHHHHhCChHHHHHHH
Q 022949 86 LDLSKVTAVSGSGQQHGSVYWKKGSATILSSLDPKKPLVDQLGDAFSTKESPVWMDSSTTAQCREIEKAVGGALELSKLT 165 (289)
Q Consensus 86 ~~~~~I~aIgis~~~~~~v~~d~~g~~~~~~~~~~~~l~~~l~~~~~l~~~i~w~D~Ra~~~~~~~~~~~~~~~~~~~~t 165 (289)
.+..+|.||+-++|.|+.|+|.+.+.-.+.+||++..|.++|..+|.+.....|+|..+..+|++++..+||+.++.++|
T Consensus 85 ~d~~kV~aiSGagQQHGsVyWs~ga~~~L~~Ld~~~~L~eQle~aF~v~~sP~WmDsSTtkQC~ElE~~VGG~~~la~LT 164 (545)
T KOG2531|consen 85 FDLSKVMAISGAGQQHGSVYWSKGAENALESLDPEKSLHEQLESAFSVQTSPIWMDSSTTKQCQELEEAVGGAQELAKLT 164 (545)
T ss_pred CCHHHhhhhcccccccceeeehhhhHHHHhcCChhhHHHHHHHHhhcccCCCcccccchHHHHHHHHHHhccHHHHHHhh
Confidence 78889999999999999999999998888899999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCChHHHHHHHHhcCcchHhhcccccccchhHHHHhhCCcceecccccccccccccCCCCCcHHHHHHcCCChhh
Q 022949 166 GSRGYERFTGPQIRKLFQTQPGVYDDTERISVVSSFMASLLIGAYACIDETDAAGMNLMDIRQRVWSKIVLEATAPSLEE 245 (289)
Q Consensus 166 G~~~~~~~~~~kl~wl~~~~pe~~~~~~~~~~~~d~l~~~LtG~~~~~d~s~As~tgl~d~~~~~W~~~ll~~~g~~~~~ 245 (289)
|+.-+.-|+.|||+-+.+.+||.|+++.++-.+++|++..|-|..+++|+|++|++.|||++++.|++++|+.+.+++++
T Consensus 165 GSRAy~RFTGpQIrKi~~~~pe~Ye~TerISLVSsFlaSlllG~~a~id~sDgsGMNL~dIr~k~ws~~~L~~~apdL~~ 244 (545)
T KOG2531|consen 165 GSRAYERFTGPQIRKIYQQEPEAYEKTERISLVSSFLASLLLGSYAPIDESDGSGMNLLDIRKKKWSKALLDACAPDLEE 244 (545)
T ss_pred cchhhhhcccHHHHHHHHhChHhhhccceeehHHHHHHHHHhccccceecccccCchHHHHhhhhhhHHHHhhhChhHHH
Confidence 99999999999999999999999999999999999999999999888999999999999999999999999999988889
Q ss_pred hcCCcccCCccceecCHHHHHHcCCCCCCeEEEccchhhhcCCC
Q 022949 246 KLGKLAPAHAVAGCIAPYFVERFHFNKNCLVVQWSGDNPNSLAG 289 (289)
Q Consensus 246 ~LP~v~~~g~~~G~v~~~~a~~~GL~~g~pV~~g~~D~~aa~~G 289 (289)
+|...+++..+.|+|++.+.+++|++++|.|++-.||+.+++.|
T Consensus 245 KL~~pv~~~~~~G~I~~Yfv~r~gF~p~C~Vv~~tGDNpsslag 288 (545)
T KOG2531|consen 245 KLGKPVPPMSIAGTISKYFVKRYGFPPDCKVVPSTGDNPSSLAG 288 (545)
T ss_pred HhCCCCCccccccchhhhhHhhcCCCCCCEEEecCCCChHHhhC
Confidence 99999999999999999999999999999999999999998865
No 22
>KOG2517 consensus Ribulose kinase and related carbohydrate kinases [Carbohydrate transport and metabolism]
Probab=100.00 E-value=7.2e-37 Score=289.30 Aligned_cols=245 Identities=23% Similarity=0.351 Sum_probs=211.3
Q ss_pred CceEEEEEcCCCceEEEEEc-CCCCEEEEEEeecccCCCccCCCCceeeCCCCCCCcCCChhHHHHHHHHHHHHHHhc--
Q 022949 9 DSLFLGFDSSTQSLKATVLD-SNLNIVASEQLQFDSELPHYKTKDGVYRDPSNNGRIVSPTLMWIEALDLMLQKLSKS-- 85 (289)
Q Consensus 9 ~~~~lgIDiGtt~iK~~l~d-~~G~il~~~~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~-- 85 (289)
.++++|||+||||+|++||| .+|+++..++.++....|++ +|+||||. ++|+++++|++.+.+.
T Consensus 5 ~~~~~gIDvGTtSaR~~v~~~~~~e~l~~~~~~i~~~~~~~---~~~eq~p~----------eI~~~V~~ci~~~~e~l~ 71 (516)
T KOG2517|consen 5 EPVVLGIDVGTTSARALVFNAKNGELLSLAQKEITQEFPKE---GWVEQDPK----------EIWQAVCRCIEKACEKLG 71 (516)
T ss_pred cceEEEEEcCCCceEEEEEecCCCccceeeeeeeeeecCCC---CeEEeCHH----------HHHHHHHHHHHHHHHhhc
Confidence 58999999999999999999 68999999999988777775 57888888 9999999999976543
Q ss_pred ---CCCCCEeEEEeccCceeeEEecCCCcccccCCCCCCCccccccccCCCCCCCeeccCCcHHHHHHHHHHhCChH-HH
Q 022949 86 ---LDLSKVTAVSGSGQQHGSVYWKKGSATILSSLDPKKPLVDQLGDAFSTKESPVWMDSSTTAQCREIEKAVGGAL-EL 161 (289)
Q Consensus 86 ---~~~~~I~aIgis~~~~~~v~~d~~g~~~~~~~~~~~~l~~~l~~~~~l~~~i~w~D~Ra~~~~~~~~~~~~~~~-~~ 161 (289)
.....|.+||++.|+++.++|++..+- | ++++|.|+|.|+..++++++....... -.
T Consensus 72 ~~~~~~~~~~~igv~~qr~~~v~w~~~tg~---------p----------~~niI~W~D~Ra~~~~~~ln~~~~~~~~~~ 132 (516)
T KOG2517|consen 72 VLNIKVVGATCIGVVNQREGSVLWNKRTGE---------P----------LTNIIVWMDHRAVSEVEELNSSTPSNLFLP 132 (516)
T ss_pred cccccccccEEEEEEecCCceEEeecCCCC---------c----------ccceEEeeccccHHHHHHHHhcCCchhccc
Confidence 223458889999999999999997764 3 479999999999999999999764211 12
Q ss_pred HHHHCCCCCCCChHHHHHHHHhcCcch-HhhcccccccchhHHHHhhC---C-c-ceecccccccccccccCCCCCcHHH
Q 022949 162 SKLTGSRGYERFTGPQIRKLFQTQPGV-YDDTERISVVSSFMASLLIG---A-Y-ACIDETDAAGMNLMDIRQRVWSKIV 235 (289)
Q Consensus 162 ~~~tG~~~~~~~~~~kl~wl~~~~pe~-~~~~~~~~~~~d~l~~~LtG---~-~-~~~d~s~As~tgl~d~~~~~W~~~l 235 (289)
.+++|.+++++|..+||+|+++|.|++ ....+..+.+++|+.|++++ . . +++|.++|+++++||..++.||..+
T Consensus 133 ~~~~Gl~~s~~f~~~KL~Wl~dn~~~~~~~~~~~~~~~~~~~twl~~~~t~~~~~~~~d~~Nas~t~~f~~~~~~wd~~~ 212 (516)
T KOG2517|consen 133 RPYCGLPVSPEFSAPKLRWLLDNVPEVLKAKEEGGFDLGTFDTWLATGLTGRSSCHCTDVTNASRTGLFNTESGLWDLKL 212 (516)
T ss_pred ccccCCccccccchheehHHhhhCHHHHHHHHhcccchhhhhhheeecCCccceeccccccccccccccchhhhhhhhhh
Confidence 268999999999999999999999999 78888888888888777765 2 2 3588999999999999999999999
Q ss_pred HHHcCCChhhhcCCcccCCccceecCHHHHHHcCCCCCCeEEEccchhhhcCCC
Q 022949 236 LEATAPSLEEKLGKLAPAHAVAGCIAPYFVERFHFNKNCLVVQWSGDNPNSLAG 289 (289)
Q Consensus 236 l~~~g~~~~~~LP~v~~~g~~~G~v~~~~a~~~GL~~g~pV~~g~~D~~aa~~G 289 (289)
++.+|++ .++||++..+++++|.+. +..+|+.+|+||.++.+|++|+++|
T Consensus 213 ~~f~~lp-~~llp~i~s~~e~~g~~~---~~~~~~~~g~~vs~~lgDq~Aa~vg 262 (516)
T KOG2517|consen 213 LDFFGLP-LNLLPDIRSSSEVYGTTA---AGDLGLLEGTPVSSCLGDQQASMVG 262 (516)
T ss_pred hhhhCCC-cccCCccccccccccccc---ccccccccCcceeechhhHHHHHHh
Confidence 9999988 799999999999999875 3457799999999999999999987
No 23
>TIGR00241 CoA_E_activ CoA-substrate-specific enzyme activase, putative. This domain may be involved in generating or regenerating the active sites of enzymes related to (R)-2-hydroxyglutaryl-CoA dehydratase and benzoyl-CoA reductase.
Probab=98.66 E-value=5.8e-08 Score=86.30 Aligned_cols=68 Identities=19% Similarity=0.309 Sum_probs=54.1
Q ss_pred eEEEEEcCCCceEEEEEcCCCCEEEEEEeecccCCCccCCCCceeeCCCCCCCcCCChhHHHHHHHHHHHHHHhc--CCC
Q 022949 11 LFLGFDSSTQSLKATVLDSNLNIVASEQLQFDSELPHYKTKDGVYRDPSNNGRIVSPTLMWIEALDLMLQKLSKS--LDL 88 (289)
Q Consensus 11 ~~lgIDiGtt~iK~~l~d~~G~il~~~~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~ 88 (289)
|++|||+|||++|++++| +|+++++.+. ||+ .||+.+.++++++.+. .+.
T Consensus 1 ~~lGIDiGtts~K~vl~d-~g~il~~~~~-----------------~~~----------~~~~~~~~~l~~~~~~~~~~~ 52 (248)
T TIGR00241 1 ISLGIDSGSTTTKMVLME-DGKVIGYKWL-----------------DTT----------PVIEETARAILEALKEAGIGL 52 (248)
T ss_pred CEEEEEcChhheEEEEEc-CCEEEEEEEe-----------------cCC----------CCHHHHHHHHHHHHHHcCCCh
Confidence 579999999999999999 8998886644 334 5677777777766543 455
Q ss_pred CCEeEEEeccCceeeEEe
Q 022949 89 SKVTAVSGSGQQHGSVYW 106 (289)
Q Consensus 89 ~~I~aIgis~~~~~~v~~ 106 (289)
.+|.+|+++++++++++.
T Consensus 53 ~~i~~i~~Tg~~~~~v~~ 70 (248)
T TIGR00241 53 EPIDKIVATGYGRHKVGF 70 (248)
T ss_pred hheeEEEEECCCcccccc
Confidence 789999999999999873
No 24
>COG1940 NagC Transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism]
Probab=98.61 E-value=1.8e-07 Score=85.69 Aligned_cols=122 Identities=18% Similarity=0.214 Sum_probs=85.9
Q ss_pred CCCceEEEEEcCCCceEEEEEcCCCCEEEEEEeecccCCCccCCCCceeeCCCCCCCcCCChhHHHHHHHHHHHHHHhcC
Q 022949 7 PKDSLFLGFDSSTQSLKATVLDSNLNIVASEQLQFDSELPHYKTKDGVYRDPSNNGRIVSPTLMWIEALDLMLQKLSKSL 86 (289)
Q Consensus 7 ~~~~~~lgIDiGtt~iK~~l~d~~G~il~~~~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 86 (289)
++..+++|||||.|++|++++|.+|+++.+.+.+++.. .+.+ .+.+.+...++++.+..
T Consensus 3 ~~~~~~lgidIggt~i~~~l~d~~g~~l~~~~~~~~~~-----------~~~~----------~~~~~i~~~i~~~~~~~ 61 (314)
T COG1940 3 PEAMTVLGIDIGGTKIKVALVDLDGEILLRERIPTPTP-----------DPEE----------AILEAILALVAELLKQA 61 (314)
T ss_pred ccCcEEEEEEecCCEEEEEEECCCCcEEEEEEEecCCC-----------Cchh----------HHHHHHHHHHHHHHHhc
Confidence 45679999999999999999999999999998887631 1112 56667777777665431
Q ss_pred -CCCCEeEEEeccCceeeEEecCCCcccccC-CCC--CCCccccccccCCCCCCCeeccCCcHHHHHHHHHH
Q 022949 87 -DLSKVTAVSGSGQQHGSVYWKKGSATILSS-LDP--KKPLVDQLGDAFSTKESPVWMDSSTTAQCREIEKA 154 (289)
Q Consensus 87 -~~~~I~aIgis~~~~~~v~~d~~g~~~~~~-~~~--~~~l~~~l~~~~~l~~~i~w~D~Ra~~~~~~~~~~ 154 (289)
...++.+||+++ ++. +++.......+ +.+ +.+|.+.|++.|+ .|+.+.||.++...+|.+...
T Consensus 62 ~~~~~~iGIgi~~--pg~--~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~-~Pv~veNDan~aalaE~~~g~ 128 (314)
T COG1940 62 QGRVAIIGIGIPG--PGD--VDNGTVIVPAPNLGWWNGVDLAEELEARLG-LPVFVENDANAAALAEAWFGA 128 (314)
T ss_pred CCcCceEEEEecc--cee--ccCCcEEeecCCCCccccccHHHHHHHHHC-CCEEEecHHHHHHHHHHHhCC
Confidence 123466666654 443 35544111112 332 3569999999998 599999999999999988754
No 25
>PRK13311 N-acetyl-D-glucosamine kinase; Provisional
Probab=98.57 E-value=2.3e-07 Score=82.82 Aligned_cols=115 Identities=16% Similarity=0.214 Sum_probs=81.1
Q ss_pred eEEEEEcCCCceEEEEEcCCCCEEEEEEeecccCCCccCCCCceeeCCCCCCCcCCChhHHHHHHHHHHHHHHhcCCCCC
Q 022949 11 LFLGFDSSTQSLKATVLDSNLNIVASEQLQFDSELPHYKTKDGVYRDPSNNGRIVSPTLMWIEALDLMLQKLSKSLDLSK 90 (289)
Q Consensus 11 ~~lgIDiGtt~iK~~l~d~~G~il~~~~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 90 (289)
+++|||+|.|++|++++|.+|+++.+.+.+++. .+++ +..+.+.++++..... ...
T Consensus 1 ~~lgidiggt~i~~~l~d~~g~i~~~~~~~~~~------------~~~~----------~~~~~i~~~i~~~~~~--~~~ 56 (256)
T PRK13311 1 MYYGFDMGGTKIELGVFDENLQRIWHKRVPTPR------------EDYP----------QLLQILRDLTEEADTY--CGV 56 (256)
T ss_pred CEEEEEECCCcEEEEEECCCCCEEEEEEecCCC------------cCHH----------HHHHHHHHHHHHHHhh--cCC
Confidence 479999999999999999999999877765431 1333 6667777766665431 223
Q ss_pred EeEEEeccCceeeEEecCCCccccc-CC-CC-CCCccccccccCCCCCCCeeccCCcHHHHHHHHHH
Q 022949 91 VTAVSGSGQQHGSVYWKKGSATILS-SL-DP-KKPLVDQLGDAFSTKESPVWMDSSTTAQCREIEKA 154 (289)
Q Consensus 91 I~aIgis~~~~~~v~~d~~g~~~~~-~~-~~-~~~l~~~l~~~~~l~~~i~w~D~Ra~~~~~~~~~~ 154 (289)
+.+|||+. +++ +|.+...+.. +. .| +.+|.+.|+..|+ .|+++-||.++..++|.+...
T Consensus 57 ~~gIgv~~--pG~--vd~~~g~i~~~~~~~w~~~~l~~~l~~~~~-~pV~leNDanaaAlaE~~~g~ 118 (256)
T PRK13311 57 QGSVGIGI--PGL--PNADDGTVFTANVPSAMGQPLQADLSRLIQ-REVRIDNDANCFALSEAWDPE 118 (256)
T ss_pred CceEEEEe--cCc--EECCCCEEEccCCCcccCCChHHHHHHHHC-CCEEEEchhhHHHHHHHHhcC
Confidence 45888887 444 3765443322 22 23 4588888988887 589999999999988877643
No 26
>PRK09698 D-allose kinase; Provisional
Probab=98.55 E-value=5e-07 Score=82.35 Aligned_cols=118 Identities=15% Similarity=0.182 Sum_probs=82.7
Q ss_pred CCCceEEEEEcCCCceEEEEEcCCCCEEEEEEeecccCCCccCCCCceeeCCCCCCCcCCChhHHHHHHHHHHHHHHhcC
Q 022949 7 PKDSLFLGFDSSTQSLKATVLDSNLNIVASEQLQFDSELPHYKTKDGVYRDPSNNGRIVSPTLMWIEALDLMLQKLSKSL 86 (289)
Q Consensus 7 ~~~~~~lgIDiGtt~iK~~l~d~~G~il~~~~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 86 (289)
++..+++|||+|.|++|++++|.+|+++.+...+++. ..+++ . .+.+.+.++++.+..
T Consensus 1 ~~~~~~lgidig~t~i~~~l~d~~g~i~~~~~~~~~~-----------~~~~~----------~-~~~l~~~i~~~~~~~ 58 (302)
T PRK09698 1 KQKNVVLGIDMGGTHIRFCLVDAEGEILHCEKKRTAE-----------VIAPD----------L-VSGLGEMIDEYLRRF 58 (302)
T ss_pred CCccEEEEEEcCCcEEEEEEEcCCCCEEEEEEeCCcc-----------ccchH----------H-HHHHHHHHHHHHHHc
Confidence 4578999999999999999999999999887765431 11222 3 555556665554431
Q ss_pred CCCCEeEEEeccCceeeEEecCCCccccc--CC---CC-CCCccccccccCCCCCCCeeccCCcHHHHHHHH
Q 022949 87 DLSKVTAVSGSGQQHGSVYWKKGSATILS--SL---DP-KKPLVDQLGDAFSTKESPVWMDSSTTAQCREIE 152 (289)
Q Consensus 87 ~~~~I~aIgis~~~~~~v~~d~~g~~~~~--~~---~~-~~~l~~~l~~~~~l~~~i~w~D~Ra~~~~~~~~ 152 (289)
..++.+|||+. ++. +|.+++.++. ++ ++ +.++.+.|++.|+ .|+..-||.++....|.+.
T Consensus 59 -~~~i~gigia~--pG~--vd~~~g~i~~~~~~~~~~~~~~~l~~~l~~~~~-~pv~v~NDa~aaa~~E~~~ 124 (302)
T PRK09698 59 -NARCHGIVMGF--PAL--VSKDRRTVISTPNLPLTALDLYDLADKLENTLN-CPVFFSRDVNLQLLWDVKE 124 (302)
T ss_pred -CCCeeEEEEeC--Ccc--eeCCCCEEEecCCCCccccccCCHHHHHHHHhC-CCEEEcchHhHHHHHHHHh
Confidence 24799999998 444 4766554332 23 24 4578888988888 4888899999988777654
No 27
>PRK09557 fructokinase; Reviewed
Probab=98.44 E-value=8.6e-07 Score=80.86 Aligned_cols=114 Identities=16% Similarity=0.159 Sum_probs=81.6
Q ss_pred eEEEEEcCCCceEEEEEcCCCCEEEEEEeecccCCCccCCCCceeeCCCCCCCcCCChhHHHHHHHHHHHHHHhcCCCCC
Q 022949 11 LFLGFDSSTQSLKATVLDSNLNIVASEQLQFDSELPHYKTKDGVYRDPSNNGRIVSPTLMWIEALDLMLQKLSKSLDLSK 90 (289)
Q Consensus 11 ~~lgIDiGtt~iK~~l~d~~G~il~~~~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 90 (289)
++||||+|.|++|++++|.+|+++.+.+.+++. ++++ .+.+.+.+.++++.+. ...
T Consensus 1 ~~lgidig~t~~~~~l~d~~g~i~~~~~~~~~~------------~~~~----------~~~~~i~~~i~~~~~~--~~~ 56 (301)
T PRK09557 1 MRIGIDLGGTKIEVIALDDAGEELFRKRLPTPR------------DDYQ----------QTIEAIATLVDMAEQA--TGQ 56 (301)
T ss_pred CEEEEEECCCcEEEEEECCCCCEEEEEEecCCC------------CCHH----------HHHHHHHHHHHHHHhh--cCC
Confidence 579999999999999999999999877665431 2334 6667777766665432 235
Q ss_pred EeEEEeccCceeeEEecCCCcccc-cCCCC--CCCccccccccCCCCCCCeeccCCcHHHHHHHHH
Q 022949 91 VTAVSGSGQQHGSVYWKKGSATIL-SSLDP--KKPLVDQLGDAFSTKESPVWMDSSTTAQCREIEK 153 (289)
Q Consensus 91 I~aIgis~~~~~~v~~d~~g~~~~-~~~~~--~~~l~~~l~~~~~l~~~i~w~D~Ra~~~~~~~~~ 153 (289)
+.+|||+.. +. +|.+.+.+. ++..| +.||.+.|++.|++ |+.+-||.++...+|.+..
T Consensus 57 ~~gIgi~~p--G~--vd~~~g~i~~~~~~~~~~~~l~~~l~~~~~~-pv~~~NDa~aaA~aE~~~g 117 (301)
T PRK09557 57 RGTVGVGIP--GS--ISPYTGLVKNANSTWLNGQPLDKDLSARLNR-EVRLANDANCLAVSEAVDG 117 (301)
T ss_pred ceEEEecCc--cc--CcCCCCeEEecCCccccCCCHHHHHHHHHCC-CEEEccchhHHHHHHHHhc
Confidence 678999874 43 375544333 23333 45888889888885 8999999999999987753
No 28
>PRK13310 N-acetyl-D-glucosamine kinase; Provisional
Probab=98.43 E-value=7.9e-07 Score=81.15 Aligned_cols=114 Identities=14% Similarity=0.220 Sum_probs=81.6
Q ss_pred eEEEEEcCCCceEEEEEcCCCCEEEEEEeecccCCCccCCCCceeeCCCCCCCcCCChhHHHHHHHHHHHHHHhcCCCCC
Q 022949 11 LFLGFDSSTQSLKATVLDSNLNIVASEQLQFDSELPHYKTKDGVYRDPSNNGRIVSPTLMWIEALDLMLQKLSKSLDLSK 90 (289)
Q Consensus 11 ~~lgIDiGtt~iK~~l~d~~G~il~~~~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 90 (289)
+++|||+|.|++|++++|.+|+++.+.+.+++. .+++ ++.+.+.+.++++... ...
T Consensus 1 ~~lgidig~t~i~~~l~d~~g~i~~~~~~~~~~------------~~~~----------~~~~~i~~~i~~~~~~--~~~ 56 (303)
T PRK13310 1 MYYGFDIGGTKIELGVFNEKLELQWEERVPTPR------------DSYD----------AFLDAVCELVAEADQR--FGC 56 (303)
T ss_pred CeEEEEeCCCcEEEEEECCCCcEEEEEEecCCC------------cCHH----------HHHHHHHHHHHHHHhh--cCC
Confidence 479999999999999999999999877665431 1234 6777777777765432 223
Q ss_pred EeEEEeccCceeeEEecCCCccccc-CC-CC-CCCccccccccCCCCCCCeeccCCcHHHHHHHHH
Q 022949 91 VTAVSGSGQQHGSVYWKKGSATILS-SL-DP-KKPLVDQLGDAFSTKESPVWMDSSTTAQCREIEK 153 (289)
Q Consensus 91 I~aIgis~~~~~~v~~d~~g~~~~~-~~-~~-~~~l~~~l~~~~~l~~~i~w~D~Ra~~~~~~~~~ 153 (289)
+.+|||+.. +. +|.+.+.+.. ++ .| +.+|.+.|++.|++ |+++-||.++...+|.+..
T Consensus 57 ~~~igia~p--G~--vd~~~g~~~~~~~~~w~~~~l~~~l~~~~~~-pV~ieNDa~aaalaE~~~g 117 (303)
T PRK13310 57 KGSVGIGIP--GM--PETEDGTLYAANVPAASGKPLRADLSARLGR-DVRLDNDANCFALSEAWDD 117 (303)
T ss_pred cceEEEeCC--Cc--ccCCCCEEeccCcccccCCcHHHHHHHHHCC-CeEEeccHhHHHHHHhhhc
Confidence 457888874 43 4765443322 33 34 45899999988884 8999999999999887764
No 29
>TIGR00744 ROK_glcA_fam ROK family protein (putative glucokinase). This alignment models one branch of the ROK superfamily of proteins. The three members of the seed alignment for this model all have experimental evidence for activity as glucokinase, but the set of related proteins is crowded with paralogs of different or unknown function. Proteins scoring above the trusted_cutoff will show strong similarity to at least one known glucokinase and may be designated as putative glucokinases. However, definitive identification of glucokinases should be done only with extreme caution.
Probab=98.35 E-value=1.8e-06 Score=79.27 Aligned_cols=113 Identities=19% Similarity=0.240 Sum_probs=82.3
Q ss_pred EEEEcCCCceEEEEEcCCCCEEEEEEeecccCCCccCCCCceeeCCCCCCCcCCChhHHHHHHHHHHHHHHhc--CCCCC
Q 022949 13 LGFDSSTQSLKATVLDSNLNIVASEQLQFDSELPHYKTKDGVYRDPSNNGRIVSPTLMWIEALDLMLQKLSKS--LDLSK 90 (289)
Q Consensus 13 lgIDiGtt~iK~~l~d~~G~il~~~~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~ 90 (289)
||||+|.|++|++++|.+|+++.+...+++ .+++ .+.+.+.+.++++.+. ....+
T Consensus 1 lgidig~t~~~~~l~d~~g~i~~~~~~~~~-------------~~~~----------~~~~~l~~~i~~~~~~~~~~~~~ 57 (318)
T TIGR00744 1 IGVDIGGTTIKLGVVDEEGNILSKWKVPTD-------------TTPE----------TIVDAIASAVDSFIQHIAKVGHE 57 (318)
T ss_pred CEEEeCCCEEEEEEECCCCCEEEEEEeCCC-------------CCHH----------HHHHHHHHHHHHHHHhcCCCccc
Confidence 589999999999999999999987665432 1233 6677777777765543 34568
Q ss_pred EeEEEeccCceeeEEecCCCccccc--CCCC-CCCccccccccCCCCCCCeeccCCcHHHHHHHHH
Q 022949 91 VTAVSGSGQQHGSVYWKKGSATILS--SLDP-KKPLVDQLGDAFSTKESPVWMDSSTTAQCREIEK 153 (289)
Q Consensus 91 I~aIgis~~~~~~v~~d~~g~~~~~--~~~~-~~~l~~~l~~~~~l~~~i~w~D~Ra~~~~~~~~~ 153 (289)
+.+|||+. ++.+ |.+.+.+.. .+.| +.++.+.|++.|+ .|+++-||.++...+|.+..
T Consensus 58 i~gIgva~--pG~v--d~~~g~~~~~~~~~w~~~~l~~~l~~~~~-~pv~v~NDa~~~alaE~~~g 118 (318)
T TIGR00744 58 IVAIGIGA--PGPV--NRQRGTVYFAVNLDWKQEPLKEKVEARVG-LPVVVENDANAAALGEYKKG 118 (318)
T ss_pred eEEEEEec--cccc--cCCCCEEEecCCCCCCCCCHHHHHHHHHC-CCEEEechHHHHHHHHHHhc
Confidence 99999997 4543 755333322 2455 4588889999888 48999999999999888764
No 30
>PF00480 ROK: ROK family; InterPro: IPR000600 A family of bacterial proteins has been described which groups transcriptional repressors, sugar kinases and yet uncharacterised open reading frames []. This family, known as ROK (Repressor, ORF, Kinase) includes the xylose operon repressor, xylR, from Bacillus subtilis, Lactobacillus pentosus and Staphylococcus xylosus; N-acetylglucosamine repressor, nagC, from Escherichia coli; glucokinase 2.7.1.2 from EC from Streptomyces coelicolor; fructokinase 2.7.1.4 from EC from Pediococcus pentosaceus, Streptococcus mutans and Zymomonas mobilis; allokinase 2.7.1.55 from EC and mlc from E. coli; and E. coli hypothetical proteins yajF and yhcI and the corresponding Haemophilus influenzae proteins. The repressor proteins (xylR and nagC) from this family possess an N-terminal region not present in the sugar kinases and which contains an helix-turn-helix DNA-binding motif.; PDB: 2GUP_A 3LM2_B 3EO3_A 2YHY_A 2YHW_A 2YI1_A 3MCP_A 1Z05_A 3HTV_A 3OHR_A ....
Probab=98.17 E-value=3.1e-06 Score=70.96 Aligned_cols=107 Identities=20% Similarity=0.268 Sum_probs=73.8
Q ss_pred EEEcCCCceEEEEEcCCCCEEEEEEeecccCCCccCCCCceeeCCCCCCCcCCChhHHHHHHHHHHHHHHhcCCCCCEeE
Q 022949 14 GFDSSTQSLKATVLDSNLNIVASEQLQFDSELPHYKTKDGVYRDPSNNGRIVSPTLMWIEALDLMLQKLSKSLDLSKVTA 93 (289)
Q Consensus 14 gIDiGtt~iK~~l~d~~G~il~~~~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~I~a 93 (289)
|||+|+++++++++|.+|+++.+.+.+++ .+++ ++.+.+.+.++++.... ... +
T Consensus 1 gidig~~~i~~~l~d~~g~ii~~~~~~~~-------------~~~~----------~~~~~l~~~i~~~~~~~--~~~-g 54 (179)
T PF00480_consen 1 GIDIGGTSIRIALVDLDGEIIYSESIPTP-------------TSPE----------ELLDALAELIERLLADY--GRS-G 54 (179)
T ss_dssp EEEEESSEEEEEEEETTSCEEEEEEEEHH-------------SSHH----------HHHHHHHHHHHHHHHHH--TCE-E
T ss_pred CEEECCCEEEEEEECCCCCEEEEEEEECC-------------CCHH----------HHHHHHHHHHHHHHhhc--ccc-c
Confidence 79999999999999999999999888775 1223 77788888888766531 122 8
Q ss_pred EEeccCceeeEEecCCCccccc-C-CCC-CCCccccccccCCCCCCCeeccCCcHHHHHHH
Q 022949 94 VSGSGQQHGSVYWKKGSATILS-S-LDP-KKPLVDQLGDAFSTKESPVWMDSSTTAQCREI 151 (289)
Q Consensus 94 Igis~~~~~~v~~d~~g~~~~~-~-~~~-~~~l~~~l~~~~~l~~~i~w~D~Ra~~~~~~~ 151 (289)
|||+.. +. +|.+.+.+.. + ..+ +.+|.+.|++.|+ .|+++-||.++..++|.+
T Consensus 55 Igi~~p--G~--v~~~~g~i~~~~~~~~~~~~l~~~l~~~~~-~pv~i~Nd~~~~a~ae~~ 110 (179)
T PF00480_consen 55 IGISVP--GI--VDSEKGRIISSPNPGWENIPLKEELEERFG-VPVIIENDANAAALAEYW 110 (179)
T ss_dssp EEEEES--SE--EETTTTEEEECSSGTGTTCEHHHHHHHHHT-SEEEEEEHHHHHHHHHHH
T ss_pred EEEecc--cc--CcCCCCeEEecCCCCcccCCHHHHhhcccc-eEEEEecCCCcceeehhh
Confidence 888874 44 4776533322 2 233 4567777777776 477777777776665544
No 31
>PRK05082 N-acetylmannosamine kinase; Provisional
Probab=98.12 E-value=1e-05 Score=73.37 Aligned_cols=110 Identities=19% Similarity=0.230 Sum_probs=77.7
Q ss_pred EEEEEcCCCceEEEEEcCCCCEEEEEEeecccCCCccCCCCceeeCCCCCCCcCCChhHHHHHHHHHHHHHHhcCCCCCE
Q 022949 12 FLGFDSSTQSLKATVLDSNLNIVASEQLQFDSELPHYKTKDGVYRDPSNNGRIVSPTLMWIEALDLMLQKLSKSLDLSKV 91 (289)
Q Consensus 12 ~lgIDiGtt~iK~~l~d~~G~il~~~~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~I 91 (289)
++|||+|.|+++++++|.+|+++.+.+.+++. ..+++ .+.+.+.++++++.. ++
T Consensus 3 ~lgvdig~~~i~~~l~dl~g~i~~~~~~~~~~-----------~~~~~----------~~~~~i~~~i~~~~~-----~~ 56 (291)
T PRK05082 3 TLAIDIGGTKIAAALVGEDGQIRQRRQIPTPA-----------SQTPE----------ALRQALSALVSPLQA-----QA 56 (291)
T ss_pred EEEEEECCCEEEEEEEcCCCcEEEEEEecCCC-----------CCCHH----------HHHHHHHHHHHHhhh-----cC
Confidence 79999999999999999999999877766531 11233 566777676665532 45
Q ss_pred eEEEeccCceeeEEecCCCccccc--CC-CC-CCCccccccccCCCCCCCeeccCCcHHHHHHHH
Q 022949 92 TAVSGSGQQHGSVYWKKGSATILS--SL-DP-KKPLVDQLGDAFSTKESPVWMDSSTTAQCREIE 152 (289)
Q Consensus 92 ~aIgis~~~~~~v~~d~~g~~~~~--~~-~~-~~~l~~~l~~~~~l~~~i~w~D~Ra~~~~~~~~ 152 (289)
.+|||+. ++.+ |.+.....+ ++ .| +.+|.+.|++.|++ |+++-||.++...+|.+.
T Consensus 57 ~~igi~~--pG~v--d~~~~~~~~~~~~~~w~~~~l~~~l~~~~~~-pv~v~NDa~a~a~aE~~~ 116 (291)
T PRK05082 57 DRVAVAS--TGII--NDGILTALNPHNLGGLLHFPLVQTLEQLTDL-PTIALNDAQAAAWAEYQA 116 (291)
T ss_pred cEEEEeC--cccc--cCCeeEEecCCCCccccCCChHHHHHHHhCC-CEEEECcHHHHHHHHHHh
Confidence 6888887 4444 533222122 23 34 55888889988884 899999999999888765
No 32
>smart00732 YqgFc Likely ribonuclease with RNase H fold. YqgF proteins are likely to function as an alternative to RuvC in most bacteria, and could be the principal holliday junction resolvases in low-GC Gram-positive bacteria. In Spt6p orthologues, the catalytic residues are substituted indicating that they lack enzymatic functions.
Probab=98.03 E-value=8.1e-06 Score=61.70 Aligned_cols=96 Identities=10% Similarity=0.120 Sum_probs=60.3
Q ss_pred eEEEEEcCCCceEEEEEcCCCCEEEEEEeecccCCCccCCCCceeeCCCCCCCcCCChhHHHHHHHHHHHHHHhcCCCCC
Q 022949 11 LFLGFDSSTQSLKATVLDSNLNIVASEQLQFDSELPHYKTKDGVYRDPSNNGRIVSPTLMWIEALDLMLQKLSKSLDLSK 90 (289)
Q Consensus 11 ~~lgIDiGtt~iK~~l~d~~G~il~~~~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 90 (289)
.+||||+|+|++|++++|.+|+++.....+.. .+.+ ...+.+.+++++. +
T Consensus 2 ~ilgiD~Ggt~i~~a~~d~~g~~~~~~~~~~~-------------~~~~----------~~~~~l~~~i~~~-------~ 51 (99)
T smart00732 2 RVLGLDPGRKGIGVAVVDETGKLADPLEVIPR-------------TNKE----------ADAARLKKLIKKY-------Q 51 (99)
T ss_pred cEEEEccCCCeEEEEEECCCCCEecCEEEEEe-------------cCcc----------hHHHHHHHHHHHh-------C
Confidence 37999999999999999999999876655432 0122 4555555555441 3
Q ss_pred EeEEEeccCceeeEEecCCCcccccCCCCCCCccccccccCCCCCCCeeccCCcHH
Q 022949 91 VTAVSGSGQQHGSVYWKKGSATILSSLDPKKPLVDQLGDAFSTKESPVWMDSSTTA 146 (289)
Q Consensus 91 I~aIgis~~~~~~v~~d~~g~~~~~~~~~~~~l~~~l~~~~~l~~~i~w~D~Ra~~ 146 (289)
+.+|||+.. +.+ +|... ..+ +.++.+.|++.++ -|+.++||.+++.
T Consensus 52 ~~~i~Ig~p--g~v----~g~~~-~~~--~~~l~~~l~~~~~-~pv~~~nDa~st~ 97 (99)
T smart00732 52 PDLIVIGLP--LNM----NGTAS-RET--EEAFAELLKERFN-LPVVLVDERLATV 97 (99)
T ss_pred CCEEEEeCC--cCC----CCCcC-HHH--HHHHHHHHHHhhC-CcEEEEeCCcccc
Confidence 556777653 322 23321 011 1356667777666 4788888888754
No 33
>PRK12408 glucokinase; Provisional
Probab=98.02 E-value=4e-06 Score=77.84 Aligned_cols=108 Identities=9% Similarity=0.024 Sum_probs=68.1
Q ss_pred ceEEEEEcCCCceEEEEEcCCCCE------EEEEEeecccCCCccCCCCceeeCCCCCCCcCCChhHHHHHHHHHHHHHH
Q 022949 10 SLFLGFDSSTQSLKATVLDSNLNI------VASEQLQFDSELPHYKTKDGVYRDPSNNGRIVSPTLMWIEALDLMLQKLS 83 (289)
Q Consensus 10 ~~~lgIDiGtt~iK~~l~d~~G~i------l~~~~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~~~~~~~~~~~~~~l~ 83 (289)
.++|++|||+|++|.+++|.+|++ +...+.+++ +.+ .+.+. ++.+.
T Consensus 16 ~~~L~~DIGGT~i~~al~d~~g~~~~~~~~~~~~~~~t~--------------~~~----------~~~~~----i~~~~ 67 (336)
T PRK12408 16 ESFVAADVGGTHVRVALVCASPDAAKPVELLDYRTYRCA--------------DYP----------SLAAI----LADFL 67 (336)
T ss_pred ccEEEEEcChhhhheeEEeccCCccccccccceeEecCC--------------Ccc----------CHHHH----HHHHH
Confidence 358999999999999999988873 333222211 111 22223 33332
Q ss_pred hcCCCCCEeEEEeccCceeeEEecCCCcccccCCCCCCCccccccccCCCCCCCeeccCCcHHHHHHHH
Q 022949 84 KSLDLSKVTAVSGSGQQHGSVYWKKGSATILSSLDPKKPLVDQLGDAFSTKESPVWMDSSTTAQCREIE 152 (289)
Q Consensus 84 ~~~~~~~I~aIgis~~~~~~v~~d~~g~~~~~~~~~~~~l~~~l~~~~~l~~~i~w~D~Ra~~~~~~~~ 152 (289)
+. ..++.+|||+.-+. .++ +|.....+++|.. +.+.|+..|++.|+.+-||.++..+.|.+.
T Consensus 68 ~~--~~~~~~igIg~pG~---~~~-~g~v~~~nl~w~~-~~~~l~~~~~~~~V~l~ND~naaa~gE~~~ 129 (336)
T PRK12408 68 AE--CAPVRRGVIASAGY---ALD-DGRVITANLPWTL-SPEQIRAQLGLQAVHLVNDFEAVAYAAPYM 129 (336)
T ss_pred hc--CCCcCEEEEEecCC---ceE-CCEEEecCCCCcc-CHHHHHHHcCCCeEEEeecHHHHHcccccC
Confidence 21 23578888887543 123 3444333455643 667888888865699999999999988665
No 34
>PRK00292 glk glucokinase; Provisional
Probab=97.96 E-value=1.1e-05 Score=74.08 Aligned_cols=108 Identities=12% Similarity=-0.003 Sum_probs=69.5
Q ss_pred ceEEEEEcCCCceEEEEEcC-CCCEEEEEEeecccCCCccCCCCceeeCCCCCCCcCCChhHHHHHHHHHHHHHHhcCCC
Q 022949 10 SLFLGFDSSTQSLKATVLDS-NLNIVASEQLQFDSELPHYKTKDGVYRDPSNNGRIVSPTLMWIEALDLMLQKLSKSLDL 88 (289)
Q Consensus 10 ~~~lgIDiGtt~iK~~l~d~-~G~il~~~~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 88 (289)
+++||||||+|++|++++|. .++++.+.+.+++ +.+ .+.+.+.+.+++ .. .
T Consensus 2 ~~~lgiDIGgT~i~~~l~~~~~~~~~~~~~~~~~--------------~~~----------~~~~~l~~~l~~--~~--~ 53 (316)
T PRK00292 2 KPALVGDIGGTNARFALCDWANGEIEQIKTYATA--------------DYP----------SLEDAIRAYLAD--EH--G 53 (316)
T ss_pred ceEEEEEcCccceEEEEEecCCCceeeeEEEecC--------------CCC----------CHHHHHHHHHHh--cc--C
Confidence 36899999999999999995 5666666555432 112 334444444433 11 1
Q ss_pred CCEeEEEeccCceeeEEecCCCcccccCCCCCCCccccccccCCCCCCCeeccCCcHHHHHHH
Q 022949 89 SKVTAVSGSGQQHGSVYWKKGSATILSSLDPKKPLVDQLGDAFSTKESPVWMDSSTTAQCREI 151 (289)
Q Consensus 89 ~~I~aIgis~~~~~~v~~d~~g~~~~~~~~~~~~l~~~l~~~~~l~~~i~w~D~Ra~~~~~~~ 151 (289)
.++.+|||+. ++.| |.+. ....++.|+.+ .+.|++.|++.|+.+-||.++..+.|.+
T Consensus 54 ~~~~gigIg~--pG~v--d~~~-i~~~n~~w~~~-~~~l~~~~~~p~v~l~ND~~aaalgE~~ 110 (316)
T PRK00292 54 VQVRSACFAI--AGPV--DGDE-VRMTNHHWAFS-IAAMKQELGLDHLLLINDFTAQALAIPR 110 (316)
T ss_pred CCCceEEEEE--eCcc--cCCE-EEecCCCcccC-HHHHHHHhCCCeEEEEecHHHHHccccc
Confidence 3578888887 4544 5542 22334445443 4677777886569999999999988865
No 35
>PRK14101 bifunctional glucokinase/RpiR family transcriptional regulator; Provisional
Probab=97.89 E-value=8e-06 Score=82.14 Aligned_cols=107 Identities=12% Similarity=0.021 Sum_probs=70.9
Q ss_pred CceEEEEEcCCCceEEEEEcCCCCEEEEEEeecccCCCccCCCCceeeCCCCCCCcCCChhHHHHHHHHHHHHHHhcCCC
Q 022949 9 DSLFLGFDSSTQSLKATVLDSNLNIVASEQLQFDSELPHYKTKDGVYRDPSNNGRIVSPTLMWIEALDLMLQKLSKSLDL 88 (289)
Q Consensus 9 ~~~~lgIDiGtt~iK~~l~d~~G~il~~~~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 88 (289)
+..+||||||+|++|++|+|.+|+++...+++++. .+ .+.+.+.+.++.. ..
T Consensus 17 ~~~~L~iDIGGT~ir~al~~~~g~i~~~~~~~t~~--------------~~----------~~~~~i~~~l~~~----~~ 68 (638)
T PRK14101 17 DGPRLLADVGGTNARFALETGPGEITQIRVYPGAD--------------YP----------TLTDAIRKYLKDV----KI 68 (638)
T ss_pred CCCEEEEEcCchhheeeeecCCCcccceeEEecCC--------------CC----------CHHHHHHHHHHhc----CC
Confidence 45689999999999999999999987776554420 02 3344444443322 11
Q ss_pred CCEeEEEeccCceeeEEecCCCcccccCCCCCCCccccccccCCCCCCCeeccCCcHHHHH
Q 022949 89 SKVTAVSGSGQQHGSVYWKKGSATILSSLDPKKPLVDQLGDAFSTKESPVWMDSSTTAQCR 149 (289)
Q Consensus 89 ~~I~aIgis~~~~~~v~~d~~g~~~~~~~~~~~~l~~~l~~~~~l~~~i~w~D~Ra~~~~~ 149 (289)
.++.+|||+. +|.| |.+. ....+++|..++ +.|+..|++.++.+-||.++..+++
T Consensus 69 ~~~~~igig~--pGpV--d~~~-~~~~nl~w~~~~-~~l~~~~g~~~v~l~ND~~aaA~ge 123 (638)
T PRK14101 69 GRVNHAAIAI--ANPV--DGDQ-VRMTNHDWSFSI-EATRRALGFDTLLVVNDFTALAMAL 123 (638)
T ss_pred CCcceEEEEE--ecCc--cCCe-eeecCCCcEecH-HHHHHHcCCCeEEEEchHHHHHcCC
Confidence 3578888887 4443 5432 222345565565 7788888876678999999998875
No 36
>TIGR03192 benz_CoA_bzdQ benzoyl-CoA reductase, bzd-type, Q subunit. Members of this family are the Q subunit of one of two related types of four-subunit ATP-dependent benzoyl-CoA reductase. This enzyme system catalyzes the dearomatization of benzoyl-CoA, a common intermediate in pathways for the degradation for a number of different aromatic compounds, such as phenol and toluene.
Probab=97.54 E-value=0.00041 Score=62.82 Aligned_cols=68 Identities=16% Similarity=0.231 Sum_probs=42.3
Q ss_pred ceEEEEEcCCCceEEEEEcCCCCEEEEEEeecccCCCccCCCCceeeCCCCCCCcCCChhHHHHHHHHHHHHHHhc--CC
Q 022949 10 SLFLGFDSSTQSLKATVLDSNLNIVASEQLQFDSELPHYKTKDGVYRDPSNNGRIVSPTLMWIEALDLMLQKLSKS--LD 87 (289)
Q Consensus 10 ~~~lgIDiGtt~iK~~l~d~~G~il~~~~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~~ 87 (289)
.+++|||+|+|++|++|+|. ++++.....++. .+| .+...++++.+.+. ..
T Consensus 32 m~~~GIDiGStt~K~Vlld~-~~i~~~~~~~tg-------------~~~-------------~~~a~~~l~~~l~~~g~~ 84 (293)
T TIGR03192 32 IITCGIDVGSVSSQAVLVCD-GELYGYNSMRTG-------------NNS-------------PDSAKNALQGIMDKIGMK 84 (293)
T ss_pred cEEEEEEeCchhEEEEEEeC-CEEEEEEeecCC-------------CCH-------------HHHHHHHHHHHHHHcCCc
Confidence 48999999999999999994 566654444321 111 23444455554332 23
Q ss_pred CCCEeEEEeccCceeeE
Q 022949 88 LSKVTAVSGSGQQHGSV 104 (289)
Q Consensus 88 ~~~I~aIgis~~~~~~v 104 (289)
..+|..++.++.+...+
T Consensus 85 ~~~v~~~~~TGyGr~~~ 101 (293)
T TIGR03192 85 LEDINYVVGTGYGRVNV 101 (293)
T ss_pred ccceEEEEEECcchhhc
Confidence 34677777777665444
No 37
>TIGR00749 glk glucokinase, proteobacterial type. This model represents glucokinase of E. coli and close homologs, mostly from other proteobacteria, presumed to have equivalent function. This glucokinase is more closely related to a number of uncharacterized paralogs than to the glucokinase glcK (fromerly yqgR) of Bacillus subtilis and its closest homologs, so the two sets are represented by separate models.
Probab=97.49 E-value=0.0002 Score=65.83 Aligned_cols=106 Identities=8% Similarity=-0.012 Sum_probs=64.5
Q ss_pred EEEEcCCCceEEEEEcCCCCEEEEEEeecccCCCccCCCCceeeCCCCCCCcCCChhHHHHHHHHHHHHHHhcC-CCCCE
Q 022949 13 LGFDSSTQSLKATVLDSNLNIVASEQLQFDSELPHYKTKDGVYRDPSNNGRIVSPTLMWIEALDLMLQKLSKSL-DLSKV 91 (289)
Q Consensus 13 lgIDiGtt~iK~~l~d~~G~il~~~~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~I 91 (289)
|.+|||+|++|.+++|++|+++..... ++ ..+.+ .+.+.+.+.+++..... .....
T Consensus 1 l~~DIGGT~i~~glvd~~g~~l~~~~~-~~------------~~~~~----------~l~~~i~~~l~~~~~~~~~~~~~ 57 (316)
T TIGR00749 1 LVGDIGGTNARLALCEIAPGEISQAKT-YS------------GLDFP----------SLEAVVRVYLEEHKVELKDPIAK 57 (316)
T ss_pred CeEecCcceeeEEEEecCCCceeeeEE-Ee------------cCCCC----------CHHHHHHHHHHhcccccCCCcCe
Confidence 579999999999999998876654321 11 01122 45555555554432110 01234
Q ss_pred eEEEeccCceeeEEecCCCcccccCCCCCCCccccccccCCCCCCCeeccCCcHHHHH
Q 022949 92 TAVSGSGQQHGSVYWKKGSATILSSLDPKKPLVDQLGDAFSTKESPVWMDSSTTAQCR 149 (289)
Q Consensus 92 ~aIgis~~~~~~v~~d~~g~~~~~~~~~~~~l~~~l~~~~~l~~~i~w~D~Ra~~~~~ 149 (289)
.+||+.+.. +. +.....+++|..++ ..|++.|++.|+.+-||.++..++|
T Consensus 58 ~~Igi~Gpv------~~-~~v~~~nl~w~~~~-~~l~~~~g~~~V~l~ND~naaa~ge 107 (316)
T TIGR00749 58 GCFAIACPI------TG-DWVAMTNHTWAFSI-AELKQNLGFSHLEIINDFTAVSYAI 107 (316)
T ss_pred EEEEEeCcc------cC-CEEEecCCCCeeCH-HHHHHhcCCCeEEEEecHHHHHcCC
Confidence 677777642 11 21122245565677 4777778866799999999999886
No 38
>TIGR03286 methan_mark_15 putative methanogenesis marker protein 15. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it. Related proteins include the BadF/BadG/BcrA/BcrD ATPase family (pfam01869), which includes an activator for (R)-2-hydroxyglutaryl-CoA dehydratase.
Probab=97.48 E-value=0.00045 Score=65.03 Aligned_cols=69 Identities=20% Similarity=0.355 Sum_probs=47.9
Q ss_pred CCceEEEEEcCCCceEEEEEcCCCCEEEEEEeecccCCCccCCCCceeeCCCCCCCcCCChhHHHHHHHHHHHHHHhc--
Q 022949 8 KDSLFLGFDSSTQSLKATVLDSNLNIVASEQLQFDSELPHYKTKDGVYRDPSNNGRIVSPTLMWIEALDLMLQKLSKS-- 85 (289)
Q Consensus 8 ~~~~~lgIDiGtt~iK~~l~d~~G~il~~~~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~-- 85 (289)
++.+++|||+|+|++|++++| +++++.....++. .......++++.+.+.
T Consensus 142 ~~g~~lGIDiGSTttK~Vl~d-d~~Ii~~~~~~t~---------------------------~~~~~a~~~l~~~l~~~G 193 (404)
T TIGR03286 142 QEGLTLGIDSGSTTTKAVVME-DNEVIGTGWVPTT---------------------------KVIESAEEAVERALEEAG 193 (404)
T ss_pred cCCEEEEEEcChhheeeEEEc-CCeEEEEEEeecc---------------------------cHHHHHHHHHHHHHHHcC
Confidence 345899999999999999998 6688877655431 1123445555554432
Q ss_pred CCCCCEeEEEeccCceeeE
Q 022949 86 LDLSKVTAVSGSGQQHGSV 104 (289)
Q Consensus 86 ~~~~~I~aIgis~~~~~~v 104 (289)
+...+|..|++++.+...+
T Consensus 194 l~~~di~~i~~TGyGR~~i 212 (404)
T TIGR03286 194 VSLEDVEAIGTTGYGRFTI 212 (404)
T ss_pred CCccceeEEEeeeecHHHH
Confidence 3456899999998876666
No 39
>TIGR02261 benz_CoA_red_D benzoyl-CoA reductase, bcr type, subunit D. This model describes the D subunit of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This family shows sequence similarity to the A subunit (TIGR02259) and to the 2-hydroxyglutaryl-CoA dehydratase alpha chain.
Probab=97.22 E-value=0.0018 Score=57.79 Aligned_cols=70 Identities=16% Similarity=0.213 Sum_probs=42.5
Q ss_pred eEEEEEcCCCceEEEEEcCCCCEE-EEEEeecccCCCccCCCCceeeCCCCCCCcCCChhHHHHHHHHHHHHHHhc--CC
Q 022949 11 LFLGFDSSTQSLKATVLDSNLNIV-ASEQLQFDSELPHYKTKDGVYRDPSNNGRIVSPTLMWIEALDLMLQKLSKS--LD 87 (289)
Q Consensus 11 ~~lgIDiGtt~iK~~l~d~~G~il-~~~~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~~ 87 (289)
+++|||+|+|++|++|+|.+++.+ ......+++. .-+| .+...++++.+.+. ..
T Consensus 2 ~~~GIDiGStttK~Vlid~~~~~~~~~~~~~~~~~----------~~~~-------------~~~~~~~l~~~~~~~g~~ 58 (262)
T TIGR02261 2 ITAGIDIGTGAIKTVLFEVDGDKEECLAKRNDRIR----------QRDP-------------FKLAEDAYDDLLEEAGLA 58 (262)
T ss_pred eEEEEEcCcccEEEEEEecCCCeeEEEEEEEecCC----------CCCH-------------HHHHHHHHHHHHHHcCCC
Confidence 689999999999999999755432 2222222210 1122 23445555555432 33
Q ss_pred CCCEeEEEeccCceee
Q 022949 88 LSKVTAVSGSGQQHGS 103 (289)
Q Consensus 88 ~~~I~aIgis~~~~~~ 103 (289)
..+|..|+.++.+...
T Consensus 59 ~~~i~~i~~TGYGR~~ 74 (262)
T TIGR02261 59 AADVAYCATTGEGESL 74 (262)
T ss_pred hhheEEEEEECCchhh
Confidence 4678888888886655
No 40
>PRK13318 pantothenate kinase; Reviewed
Probab=97.10 E-value=0.0011 Score=59.20 Aligned_cols=63 Identities=21% Similarity=0.185 Sum_probs=41.1
Q ss_pred EEEEEcCCCceEEEEEcCCCCEEEEEEeecccCCCccCCCCceeeCCCCCCCcCCChhHHHHHHHHHHHHHHhcCCCCCE
Q 022949 12 FLGFDSSTQSLKATVLDSNLNIVASEQLQFDSELPHYKTKDGVYRDPSNNGRIVSPTLMWIEALDLMLQKLSKSLDLSKV 91 (289)
Q Consensus 12 ~lgIDiGtt~iK~~l~d~~G~il~~~~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~I 91 (289)
+|+||+|.|++|.+++| +|+++.+.+.+++. ...++ ++...+.+.++... .+..++
T Consensus 2 iL~IDIGnT~iK~al~d-~g~i~~~~~~~t~~-----------~~~~~----------~~~~~l~~l~~~~~--~~~~~i 57 (258)
T PRK13318 2 LLAIDVGNTNTVFGLYE-GGKLVAHWRISTDS-----------RRTAD----------EYGVWLKQLLGLSG--LDPEDI 57 (258)
T ss_pred EEEEEECCCcEEEEEEE-CCEEEEEEEEeCCC-----------CCCHH----------HHHHHHHHHHHHcC--CCcccC
Confidence 78999999999999999 68888776665431 11223 44444444332211 233568
Q ss_pred eEEEecc
Q 022949 92 TAVSGSG 98 (289)
Q Consensus 92 ~aIgis~ 98 (289)
.+|++++
T Consensus 58 ~~I~iss 64 (258)
T PRK13318 58 TGIIISS 64 (258)
T ss_pred ceEEEEE
Confidence 9999987
No 41
>PF01869 BcrAD_BadFG: BadF/BadG/BcrA/BcrD ATPase family; InterPro: IPR002731 This domain is found in the BadF (O07462 from SWISSPROT) and BadG (O07463 from SWISSPROT) proteins that are two subunits of Benzoyl-CoA reductase, that may be involved in ATP hydrolysis. The family also includes an activase subunit from the enzyme 2-hydroxyglutaryl-CoA dehydratase (P11568 from SWISSPROT). The hypothetical protein AQ_278 from Aquifex aeolicus O66634 from SWISSPROT contains two copies of this region suggesting that the family may structurally dimerise.; PDB: 2E2N_B 2E2Q_A 2E2P_B 2E2O_A 1ZBS_A 2CH6_A 2CH5_D 1ZC6_A 1HUX_A.
Probab=97.10 E-value=0.00064 Score=61.01 Aligned_cols=63 Identities=19% Similarity=0.163 Sum_probs=41.1
Q ss_pred EEEEcCCCceEEEEEcCCCCEEEEEEeecccCCCccCCCCceeeCCCCCCCcCCChhHHHHHHHHHHHHHHhc--CCCCC
Q 022949 13 LGFDSSTQSLKATVLDSNLNIVASEQLQFDSELPHYKTKDGVYRDPSNNGRIVSPTLMWIEALDLMLQKLSKS--LDLSK 90 (289)
Q Consensus 13 lgIDiGtt~iK~~l~d~~G~il~~~~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~ 90 (289)
||||.|+|++|++|+|.+|+++.+....... ....+.+ ...+.+.+.++++.+. ....+
T Consensus 1 lGIDgGgTkt~~vl~d~~g~il~~~~~~~~n---------~~~~~~~----------~~~~~i~~~i~~~~~~~~~~~~~ 61 (271)
T PF01869_consen 1 LGIDGGGTKTKAVLVDENGNILGRGKGGGAN---------YNSVGFE----------EAMENIKEAIEEALSQAGLSPDD 61 (271)
T ss_dssp EEEEECSSEEEEEEEETTSEEEEEEEES-TT---------HHHHHHH----------HHHHHHHHHHHHHHHHHTTSTTC
T ss_pred CEEeeChheeeeEEEeCCCCEEEEEEeCCCC---------CCCCCcc----------hhhhHHHHHHHHHHHHcCCCccc
Confidence 7999999999999999999988776543211 0112223 5666777777766543 34445
Q ss_pred EeEE
Q 022949 91 VTAV 94 (289)
Q Consensus 91 I~aI 94 (289)
|..+
T Consensus 62 i~~~ 65 (271)
T PF01869_consen 62 IAAI 65 (271)
T ss_dssp CCEE
T ss_pred ccee
Confidence 5544
No 42
>PRK13321 pantothenate kinase; Reviewed
Probab=97.02 E-value=0.0012 Score=58.87 Aligned_cols=63 Identities=24% Similarity=0.237 Sum_probs=42.5
Q ss_pred EEEEEcCCCceEEEEEcCCCCEEEEEEeecccCCCccCCCCceeeCCCCCCCcCCChhHHHHHHHHHHHHHHhcCCCCCE
Q 022949 12 FLGFDSSTQSLKATVLDSNLNIVASEQLQFDSELPHYKTKDGVYRDPSNNGRIVSPTLMWIEALDLMLQKLSKSLDLSKV 91 (289)
Q Consensus 12 ~lgIDiGtt~iK~~l~d~~G~il~~~~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~I 91 (289)
+|+||+|.|++|.+++|.+ +++...+.+++. ..+++ ++...+...++... ....+|
T Consensus 2 iL~IDIGnT~ik~gl~~~~-~i~~~~~~~T~~-----------~~~~~----------~~~~~l~~l~~~~~--~~~~~i 57 (256)
T PRK13321 2 LLLIDVGNTNIKLGVFDGD-RLLRSFRLPTDK-----------SRTSD----------ELGILLLSLFRHAG--LDPEDI 57 (256)
T ss_pred EEEEEECCCeEEEEEEECC-EEEEEEEEecCC-----------CCCHH----------HHHHHHHHHHHHcC--CChhhC
Confidence 6899999999999999944 777665554431 12223 66666666665432 233478
Q ss_pred eEEEecc
Q 022949 92 TAVSGSG 98 (289)
Q Consensus 92 ~aIgis~ 98 (289)
.+|++++
T Consensus 58 ~~i~vss 64 (256)
T PRK13321 58 RAVVISS 64 (256)
T ss_pred CeEEEEe
Confidence 9999987
No 43
>COG2971 Predicted N-acetylglucosamine kinase [Carbohydrate transport and metabolism]
Probab=96.81 E-value=0.0037 Score=56.51 Aligned_cols=34 Identities=21% Similarity=0.317 Sum_probs=30.0
Q ss_pred CCCceEEEEEcCCCceEEEEEcCCCCEEEEEEee
Q 022949 7 PKDSLFLGFDSSTQSLKATVLDSNLNIVASEQLQ 40 (289)
Q Consensus 7 ~~~~~~lgIDiGtt~iK~~l~d~~G~il~~~~~~ 40 (289)
++..|+||||-|+|++|++|.|.+|+++......
T Consensus 2 ~~~~~~lGVDGGGTkt~a~l~~~~g~vlg~g~sG 35 (301)
T COG2971 2 EPMPYFLGVDGGGTKTRAVLADEDGNVLGRGKSG 35 (301)
T ss_pred CCccEEEEEccCCcceEEEEEcCCCcEEEEeccC
Confidence 3468999999999999999999999999877553
No 44
>COG1924 Activator of 2-hydroxyglutaryl-CoA dehydratase (HSP70-class ATPase domain) [Lipid metabolism]
Probab=96.72 E-value=0.0054 Score=56.93 Aligned_cols=71 Identities=21% Similarity=0.303 Sum_probs=47.4
Q ss_pred CCceEEEEEcCCCceEEEEEcCCCCEEEEEEeecccCCCccCCCCceeeCCCCCCCcCCChhHHHHHHHHHHHHHHhcCC
Q 022949 8 KDSLFLGFDSSTQSLKATVLDSNLNIVASEQLQFDSELPHYKTKDGVYRDPSNNGRIVSPTLMWIEALDLMLQKLSKSLD 87 (289)
Q Consensus 8 ~~~~~lgIDiGtt~iK~~l~d~~G~il~~~~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 87 (289)
+..++||||.|+|.+|++|+++++.+.......++ -.| .-.+++.+.++.+.. .
T Consensus 133 ~~~~~LGID~GSTtTK~VLm~d~~~I~~~~~~~t~-------------g~p-----------~~~~~l~~~le~l~~--~ 186 (396)
T COG1924 133 QGMYTLGIDSGSTTTKAVLMEDGKEILYGFYVSTK-------------GRP-----------IAEKALKEALEELGE--K 186 (396)
T ss_pred cCcEEEEEecCCcceeEEEEeCCCeEEEEEEEcCC-------------CCh-----------hHHHHHHHHHHHccc--C
Confidence 45799999999999999999988856554443322 011 112344455555432 3
Q ss_pred CCCEeEEEeccCceeeE
Q 022949 88 LSKVTAVSGSGQQHGSV 104 (289)
Q Consensus 88 ~~~I~aIgis~~~~~~v 104 (289)
..+|.++|+++.+...+
T Consensus 187 ~~~I~~~~~TGYGR~~v 203 (396)
T COG1924 187 LEEILGLGVTGYGRNLV 203 (396)
T ss_pred hheeeeeeeecccHHHh
Confidence 46899999999877665
No 45
>PF05378 Hydant_A_N: Hydantoinase/oxoprolinase N-terminal region; InterPro: IPR008040 This domain is found at the N terminus of the hydantoinase/oxoprolinase IPR002821 from INTERPRO family.
Probab=96.59 E-value=0.0076 Score=50.80 Aligned_cols=74 Identities=20% Similarity=0.254 Sum_probs=52.7
Q ss_pred EEEEcCCCceEEEEEcCCCCEEEEEEeecccCCCccCCCCceeeCCCCCCCcCCChhHHHHHHHHHHHHHHhc--CCCCC
Q 022949 13 LGFDSSTQSLKATVLDSNLNIVASEQLQFDSELPHYKTKDGVYRDPSNNGRIVSPTLMWIEALDLMLQKLSKS--LDLSK 90 (289)
Q Consensus 13 lgIDiGtt~iK~~l~d~~G~il~~~~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~ 90 (289)
||||+|+|.+-++++|.+++++.....++. |. +....+..+++.+... .+..+
T Consensus 2 igIDvGGT~TD~v~~d~~~~~~~~~K~~Tt---------------~~----------d~~~gi~~al~~l~~~~~~~~~~ 56 (176)
T PF05378_consen 2 IGIDVGGTFTDAVLLDEDTGVVATAKVPTT---------------PD----------DPAEGILEALDALLEESGIDPSD 56 (176)
T ss_pred eeEecCCCcEEEEEEeCCCCEEEEEEeCCC---------------Cc----------CHHHHHHHHHHhhhcccCCChhh
Confidence 799999999999999998788888777642 12 3455677777776543 45678
Q ss_pred EeEEEeccCceeeEEecCCCc
Q 022949 91 VTAVSGSGQQHGSVYWKKGSA 111 (289)
Q Consensus 91 I~aIgis~~~~~~v~~d~~g~ 111 (289)
|..|-++++..+=.++-++|.
T Consensus 57 i~~v~~gTT~~tNAl~e~~g~ 77 (176)
T PF05378_consen 57 IDRVRHGTTVATNALLERKGA 77 (176)
T ss_pred CcEEEeccHHHHHHHHhccCC
Confidence 888888887544444455553
No 46
>TIGR02259 benz_CoA_red_A benzoyl-CoA reductase, bcr type, subunit A. This model describes A, or gamma, subunit of the bcr type of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This family shows strong sequence similarity to the 2-hydroxyglutaryl-CoA dehydratase alpha chain and to subunits of different types of benzoyl-CoA reductase (such as the bzd type).
Probab=96.50 E-value=0.0034 Score=58.97 Aligned_cols=33 Identities=18% Similarity=0.331 Sum_probs=29.4
Q ss_pred ceEEEEEcCCCceEEEEEcCCCCEEEEEEeecc
Q 022949 10 SLFLGFDSSTQSLKATVLDSNLNIVASEQLQFD 42 (289)
Q Consensus 10 ~~~lgIDiGtt~iK~~l~d~~G~il~~~~~~~~ 42 (289)
+|++|||+|+|++|++|+|.+++++.+...++.
T Consensus 2 ~y~lGIDIGSTsTKaVVmd~~g~Il~~~i~pTG 34 (432)
T TIGR02259 2 ECFVGIDLGSTTTKAVLMDDKGEVIGRGITNSR 34 (432)
T ss_pred ceEEEEEcCchhEEEEEEcCCCcEEEEEecCCC
Confidence 589999999999999999998899988877653
No 47
>PF14574 DUF4445: Domain of unknown function (DUF4445); PDB: 3ZYY_X.
Probab=96.00 E-value=0.011 Score=56.17 Aligned_cols=86 Identities=10% Similarity=0.137 Sum_probs=44.1
Q ss_pred ceEEEEEcCCCceEEEEEcC-CCCEEEEEEeecccC-CCccC--CCCceeeCCCCCCCcCCChhHHHHHHHHHHHHHHhc
Q 022949 10 SLFLGFDSSTQSLKATVLDS-NLNIVASEQLQFDSE-LPHYK--TKDGVYRDPSNNGRIVSPTLMWIEALDLMLQKLSKS 85 (289)
Q Consensus 10 ~~~lgIDiGtt~iK~~l~d~-~G~il~~~~~~~~~~-~~~~~--~~g~~e~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 85 (289)
+|-++||||||.+++.++|. +|++++..+..+|.. +...- +=.++. +|+. .+.=-..+.+.+..+++++.+.
T Consensus 1 ~~GiAvDiGTTti~~~L~dl~~G~~l~~~s~~NpQ~~~GaDViSRI~~a~-~~~~---~~~L~~~i~~~i~~li~~l~~~ 76 (412)
T PF14574_consen 1 NYGIAVDIGTTTIAAYLVDLETGEVLATASFLNPQRAYGADVISRISYAL-SPEG---LEELQRLIRETINELIEELLEK 76 (412)
T ss_dssp -EEEEEEE-SSEEEEEEEETTT--EEEEEEEE-GGGGT-SSHHHHHHHHH--TTH---HHHHHHHHHHHHHHHHHHHHHH
T ss_pred CEEEEEEcchhheeeEEEECCCCCEEEeecccCCCCCcchHHHHHHHHhc-CCch---HHHHHHHHHHHHHHHHHHHHHH
Confidence 36789999999999999996 899999999887643 11100 000111 2220 0000002333444555554432
Q ss_pred --CCCCCEeEEEeccC
Q 022949 86 --LDLSKVTAVSGSGQ 99 (289)
Q Consensus 86 --~~~~~I~aIgis~~ 99 (289)
+++.+|..|.|++.
T Consensus 77 ~gi~~~~I~~i~i~GN 92 (412)
T PF14574_consen 77 AGISPEDIYEIVIVGN 92 (412)
T ss_dssp HT--GGGEEEEEEEE-
T ss_pred cCCCHHHeEEEEEEec
Confidence 56778988888763
No 48
>PRK15080 ethanolamine utilization protein EutJ; Provisional
Probab=95.79 E-value=0.056 Score=48.55 Aligned_cols=35 Identities=26% Similarity=0.222 Sum_probs=28.4
Q ss_pred CCCceEEEEEcCCCceEEEEEcCCCCEEEEEEeec
Q 022949 7 PKDSLFLGFDSSTQSLKATVLDSNLNIVASEQLQF 41 (289)
Q Consensus 7 ~~~~~~lgIDiGtt~iK~~l~d~~G~il~~~~~~~ 41 (289)
.++++++||||||+++|+++.+.+++++.....+-
T Consensus 21 ~~~~~~~~iDiGSssi~~vv~~~~~~~~~~~~~~~ 55 (267)
T PRK15080 21 TESPLKVGVDLGTANIVLAVLDEDGQPVAGALEWA 55 (267)
T ss_pred CCCCEEEEEEccCceEEEEEEcCCCCEEEEEeccc
Confidence 35789999999999999999988887766655543
No 49
>PF00349 Hexokinase_1: Hexokinase; InterPro: IPR022672 Hexokinase is an important enzyme that catalyses the ATP-dependent conversion of aldo- and keto-hexose sugars to the hexose-6-phosphate (H6P). The enzyme can catalyse this reaction on glucose, fructose, sorbitol and glucosamine, and as such is the first step in a number of metabolic pathways []. The addition of a phosphate group to the sugar acts to trap it in a cell, since the negatively charged phosphate cannot easily traverse the plasma membrane. The enzyme is widely distributed in eukaryotes. There are three isozymes of hexokinase in yeast (PI, PII and glucokinase): isozymes PI and PII phosphorylate both aldo- and keto-sugars; glucokinase is specific for aldo-hexoses. All three isozymes contain two domains []. Structural studies of yeast hexokinase reveal a well-defined catalytic pocket that binds ATP and hexose, allowing easy transfer of the phosphate from ATP to the sugar []. Vertebrates contain four hexokinase isozymes, designated I to IV, where types I to III contain a duplication of the two-domain yeast-type hexokinases. Both the N- and C-terminal halves bind hexose and H6P, though in types I an III only the C-terminal half supports catalysis, while both halves support catalysis in type II. The N-terminal half is the regulatory region. Type IV hexokinase is similar to the yeast enzyme in containing only the two domains, and is sometimes incorrectly referred to as glucokinase. The different vertebrate isozymes differ in their catalysis, localisation and regulation, thereby contributing to the different patterns of glucose metabolism in different tissues []. Whereas types I to III can phosphorylate a variety of hexose sugars and are inhibited by glucose-6-phosphate (G6P), type IV is specific for glucose and shows no G6P inhibition. Type I enzyme may have a catabolic function, producing H6P for energy production in glycolysis; it is bound to the mitochondrial membrane, which enables the coordination of glycolysis with the TCA cycle. Types II and III enzyme may have anabolic functions, providing H6P for glycogen or lipid synthesis. Type IV enzyme is found in the liver and pancreatic beta-cells, where it is controlled by insulin (activation) and glucagon (inhibition). In pancreatic beta-cells, type IV enzyme acts as a glucose sensor to modify insulin secretion. Mutations in type IV hexokinase have been associated with diabetes mellitus. Hexokinase (2.7.1.1 from EC), a fructose and glucose phosphorylating enzyme, contains two structurally similar domains represented by this family and PF03727 from PFAM. Some hexokinases have two copies of each of these domains. This entry represents the N-terminal domain.; GO: 0005524 ATP binding, 0016773 phosphotransferase activity, alcohol group as acceptor, 0005975 carbohydrate metabolic process; PDB: 3O1W_A 3O6W_A 3O4W_B 3O08_B 3O80_A 3O5B_A 3O8M_A 3O1B_A 1BG3_A 4DHY_A ....
Probab=95.44 E-value=0.033 Score=48.12 Aligned_cols=72 Identities=15% Similarity=0.165 Sum_probs=44.9
Q ss_pred ceEEEEEcCCCceEEEEEcCCCC-EEEEEEeecccCCCccCCCCceeeCCCCCCCcCCChhHHHHHHHHHHHHHHhc--C
Q 022949 10 SLFLGFDSSTQSLKATVLDSNLN-IVASEQLQFDSELPHYKTKDGVYRDPSNNGRIVSPTLMWIEALDLMLQKLSKS--L 86 (289)
Q Consensus 10 ~~~lgIDiGtt~iK~~l~d~~G~-il~~~~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~ 86 (289)
..||+||+|+||.|++++...|+ .+...+..++. |.. ......+ ++++.+..++....+. .
T Consensus 63 G~~LalDlGGTnlRv~~V~L~g~~~~~~~~~~~~i--p~~----~~~~~~~----------~lFd~ia~~i~~f~~~~~~ 126 (206)
T PF00349_consen 63 GDFLALDLGGTNLRVALVELSGNGKVEIEQEKYKI--PEE----LMNGSGE----------ELFDFIADCIAEFLKEHNL 126 (206)
T ss_dssp EEEEEEEESSSSEEEEEEEEESSSEEEEEEEEEE----HH----HHTSBHH----------HHHHHHHHHHHHHHHHTTT
T ss_pred ceEEEEeecCcEEEEEEEEEcCCCCceeeeccccC--ChH----HhcCCcc----------cHHHHHHHHHHHHHHHhcc
Confidence 47999999999999999997554 44444444432 221 0111113 8899999999886653 2
Q ss_pred -CCCCEeEEEec
Q 022949 87 -DLSKVTAVSGS 97 (289)
Q Consensus 87 -~~~~I~aIgis 97 (289)
+..+..-+|++
T Consensus 127 ~~~~~~l~lGfT 138 (206)
T PF00349_consen 127 ESRDEKLPLGFT 138 (206)
T ss_dssp TSTTSEEEEEEE
T ss_pred cccccccceEEE
Confidence 23455556664
No 50
>smart00842 FtsA Cell division protein FtsA. FtsA is essential for bacterial cell division, and co-localizes to the septal ring with FtsZ. It has been suggested that the interaction of FtsA-FtsZ has arisen through coevolution in different bacterial strains PUBMED:9352931.
Probab=95.20 E-value=0.16 Score=42.98 Aligned_cols=70 Identities=20% Similarity=0.285 Sum_probs=43.6
Q ss_pred EEEEEcCCCceEEEEEcC--CC--CEEEEEEeecccCCCccCCCCceeeCCCCCCCcCCChhHHHHHHHHHHHHHHhc--
Q 022949 12 FLGFDSSTQSLKATVLDS--NL--NIVASEQLQFDSELPHYKTKDGVYRDPSNNGRIVSPTLMWIEALDLMLQKLSKS-- 85 (289)
Q Consensus 12 ~lgIDiGtt~iK~~l~d~--~G--~il~~~~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~-- 85 (289)
++||||||+++|+++... +| ++++....|.. +.....-.|.+ ...+++.++++++.+.
T Consensus 1 ~~~lDIGs~~ik~vv~~~~~~~~~~i~g~~~~~s~------gi~~G~I~d~~----------~~~~~I~~ai~~ae~~~~ 64 (187)
T smart00842 1 IVGLDIGTSKIKALVAEVDEDGEINVIGVGEVPSR------GIRKGVIVDIE----------AAARAIREAVEEAERMAG 64 (187)
T ss_pred CEEEEeccceEEEEEEEEcCCCCEEEEEEEEecCC------CccCcEEECHH----------HHHHHHHHHHHHHHHHhC
Confidence 479999999999999863 45 45555544321 11123456766 7788888888877553
Q ss_pred CCCCCEeEEEecc
Q 022949 86 LDLSKVTAVSGSG 98 (289)
Q Consensus 86 ~~~~~I~aIgis~ 98 (289)
...++ ..+++++
T Consensus 65 ~~i~~-V~v~i~g 76 (187)
T smart00842 65 VKIDS-VYVGISG 76 (187)
T ss_pred CcccE-EEEEEcC
Confidence 22222 3466665
No 51
>KOG1794 consensus N-Acetylglucosamine kinase [Carbohydrate transport and metabolism]
Probab=94.99 E-value=0.13 Score=46.36 Aligned_cols=71 Identities=8% Similarity=0.156 Sum_probs=50.7
Q ss_pred CceEEEEEcCCCceEEEEEcCCCCEEEEEEeecccCCCccCCCCceeeCCCCCCCcCCChhHHHHHHHHHHHHHHhc--C
Q 022949 9 DSLFLGFDSSTQSLKATVLDSNLNIVASEQLQFDSELPHYKTKDGVYRDPSNNGRIVSPTLMWIEALDLMLQKLSKS--L 86 (289)
Q Consensus 9 ~~~~lgIDiGtt~iK~~l~d~~G~il~~~~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~ 86 (289)
..+|.||+=|.|..|.+++|++|+++.++...... |. ..+-. ...+.+++.+.+..++ +
T Consensus 2 ~~~y~GvEGgaT~s~~Vivd~~~~~~~~a~~~~Tn---h~------~ig~~----------~~~~rie~~i~~A~~k~g~ 62 (336)
T KOG1794|consen 2 KDFYGGVEGGATCSRLVIVDEDGTILGRAVGGGTN---HW------LIGST----------TCASRIEDMIREAKEKAGW 62 (336)
T ss_pred CceeEeecCCcceeEEEEECCCCCEeeEeeccccc---cc------cCCch----------HHHHHHHHHHHHHHhhcCC
Confidence 57899999999999999999999999988765432 11 11222 6677788888776543 5
Q ss_pred CCCC-EeEEEecc
Q 022949 87 DLSK-VTAVSGSG 98 (289)
Q Consensus 87 ~~~~-I~aIgis~ 98 (289)
+... ++++|++-
T Consensus 63 d~~~~lr~lgL~l 75 (336)
T KOG1794|consen 63 DKKGPLRSLGLGL 75 (336)
T ss_pred CccCccceeeeec
Confidence 5555 77766653
No 52
>PRK09472 ftsA cell division protein FtsA; Reviewed
Probab=94.83 E-value=0.23 Score=47.56 Aligned_cols=76 Identities=17% Similarity=0.205 Sum_probs=47.7
Q ss_pred CCCceEEEEEcCCCceEEEEEc--CCC--CEEEEEEeecccCCCccCCCCceeeCCCCCCCcCCChhHHHHHHHHHHHHH
Q 022949 7 PKDSLFLGFDSSTQSLKATVLD--SNL--NIVASEQLQFDSELPHYKTKDGVYRDPSNNGRIVSPTLMWIEALDLMLQKL 82 (289)
Q Consensus 7 ~~~~~~lgIDiGtt~iK~~l~d--~~G--~il~~~~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~~~~~~~~~~~~~~l 82 (289)
++.++++||||||+++|+++.. .+| ++++....+.. |.....-.|.+ ...+++.++++.+
T Consensus 5 ~~~~~i~~lDIGsskv~~vv~~~~~~~~~~i~g~~~~~s~------gi~~G~I~d~~----------~~~~aI~~av~~a 68 (420)
T PRK09472 5 TDRKLVVGLEIGTAKVAALVGEVLPDGMVNIIGVGSCPSR------GMDKGGVNDLE----------SVVKCVQRAIDQA 68 (420)
T ss_pred cCCCEEEEEEcccceEEEEEEEEcCCCCEEEEEEEEccCC------CccCCEEEcHH----------HHHHHHHHHHHHH
Confidence 3457899999999999999876 355 45555555421 11123556766 7788888888877
Q ss_pred Hhc--CCCCCEeEEEeccC
Q 022949 83 SKS--LDLSKVTAVSGSGQ 99 (289)
Q Consensus 83 ~~~--~~~~~I~aIgis~~ 99 (289)
.+. ....++ .+++++.
T Consensus 69 e~~~g~~i~~v-~v~i~g~ 86 (420)
T PRK09472 69 ELMADCQISSV-YLALSGK 86 (420)
T ss_pred HHHhCCcccEE-EEEecCc
Confidence 643 222332 3566653
No 53
>PTZ00288 glucokinase 1; Provisional
Probab=94.45 E-value=0.24 Score=47.24 Aligned_cols=72 Identities=22% Similarity=0.253 Sum_probs=44.0
Q ss_pred CCCceEEEEEcCCCceEEEEEcC---CCCEEEEEEeecccCCCccCCCCceeeCCCCCCCcCCChhHHHHHHHHHHHHHH
Q 022949 7 PKDSLFLGFDSSTQSLKATVLDS---NLNIVASEQLQFDSELPHYKTKDGVYRDPSNNGRIVSPTLMWIEALDLMLQKLS 83 (289)
Q Consensus 7 ~~~~~~lgIDiGtt~iK~~l~d~---~G~il~~~~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~~~~~~~~~~~~~~l~ 83 (289)
+.-.|++|+|||+||+|.++++. ++..+...++.++. .-.|.. +..+.+...++.|.
T Consensus 23 ~~~~~~~~~DiGgt~~R~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~----------~~~~~~~~~~~~l~ 82 (405)
T PTZ00288 23 SSGPIFVGCDVGGTNARVGFAREVQHDDSGVHIIYVRFNV----------TKTDIR----------ELLEFFDEVLQKLK 82 (405)
T ss_pred ccCCeEEEEEecCCceEEEEEeccCCCCCceeEEEEeccc----------ccccHH----------HHHHHHHHHHHHHH
Confidence 34678999999999999999985 23334444444431 012222 56777777888877
Q ss_pred hc-C--CCCCEeEEEecc
Q 022949 84 KS-L--DLSKVTAVSGSG 98 (289)
Q Consensus 84 ~~-~--~~~~I~aIgis~ 98 (289)
+. . ....-.+|+|.+
T Consensus 83 ~~~~~~~~~~~a~iAvAG 100 (405)
T PTZ00288 83 KNLSFIQRVAAGAISVPG 100 (405)
T ss_pred hcCccccCcCeEEEEEeC
Confidence 64 1 222334556654
No 54
>TIGR01174 ftsA cell division protein FtsA. This bacterial cell division protein interacts with FtsZ, the bacterial homolog of tubulin. It is an ATP-binding protein and shows structural similarities to actin and heat shock cognate protein 70.
Probab=94.34 E-value=0.3 Score=45.86 Aligned_cols=72 Identities=22% Similarity=0.259 Sum_probs=44.9
Q ss_pred eEEEEEcCCCceEEEEEcC--CC--CEEEEEEeecccCCCccCCCCceeeCCCCCCCcCCChhHHHHHHHHHHHHHHhc-
Q 022949 11 LFLGFDSSTQSLKATVLDS--NL--NIVASEQLQFDSELPHYKTKDGVYRDPSNNGRIVSPTLMWIEALDLMLQKLSKS- 85 (289)
Q Consensus 11 ~~lgIDiGtt~iK~~l~d~--~G--~il~~~~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~- 85 (289)
.++||||||+++|+++... ++ ++++....|.. +.....-.|.+ ...+++.++++++.+.
T Consensus 1 ~~~~lDIGs~~ik~vv~~~~~~~~~~i~~~~~~~~~------gi~~G~I~d~~----------~~~~~i~~al~~~e~~~ 64 (371)
T TIGR01174 1 LIVGLDIGTSKICAIVAEVLEDGELNIIGVGTHPSR------GIKKGVINDIE----------AAVGSIQRAIEAAELMA 64 (371)
T ss_pred CEEEEEeccceEEEEEEEEcCCCCEEEEEEEEecCC------CccCcEEEcHH----------HHHHHHHHHHHHHHHHh
Confidence 3789999999999999863 34 44454444322 21223556776 7778888888876543
Q ss_pred -CCCCCEeEEEeccC
Q 022949 86 -LDLSKVTAVSGSGQ 99 (289)
Q Consensus 86 -~~~~~I~aIgis~~ 99 (289)
...++ ..+++++.
T Consensus 65 ~~~i~~-v~~~v~g~ 78 (371)
T TIGR01174 65 GCEIRS-VIVSISGA 78 (371)
T ss_pred CCcccE-EEEEEccc
Confidence 22222 34666653
No 55
>TIGR03123 one_C_unchar_1 probable H4MPT-linked C1 transfer pathway protein. This protein family was identified, by the method of partial phylogenetic profiling, as related to the use of tetrahydromethanopterin (H4MPT) as a C-1 carrier. Characteristic markers of the H4MPT-linked C1 transfer pathway include formylmethanofuran dehydrogenase subunits, methenyltetrahydromethanopterin cyclohydrolase, etc. Tetrahydromethanopterin, a tetrahydrofolate analog, occurs in methanogenic archaea, bacterial methanotrophs, planctomycetes, and a few other lineages.
Probab=93.67 E-value=0.17 Score=46.71 Aligned_cols=31 Identities=32% Similarity=0.298 Sum_probs=27.0
Q ss_pred EEEEcCCCceEEEEEcCCCCEEEEEEeeccc
Q 022949 13 LGFDSSTQSLKATVLDSNLNIVASEQLQFDS 43 (289)
Q Consensus 13 lgIDiGtt~iK~~l~d~~G~il~~~~~~~~~ 43 (289)
||+|||+-|+|++++|.+|++....+.++|.
T Consensus 1 ~G~DiGGA~~K~a~~~~~g~~~~v~~~~~pl 31 (318)
T TIGR03123 1 LGIDIGGANTKAAELDEDGRIKEVHQLYCPL 31 (318)
T ss_pred CccccccceeeeEEecCCCceeEEEEecCcc
Confidence 6999999999999999999988877766663
No 56
>TIGR02707 butyr_kinase butyrate kinase. This model represents an enzyme family in which members are designated either butryate kinase or branched-chain carboxylic acid kinase. The EC designation 2.7.2.7 describes an enzyme with relatively broad specificity; gene products whose context suggests a role in metabolism of aliphatic amino acids are likely to act as branched-chain carboxylic acid kinase. The gene typically found adjacent, ptb (phosphate butyryltransferase), likewise encodes an enzyme that may have a broad specificity that includes a role in aliphatic amino acid cabolism.
Probab=93.50 E-value=0.23 Score=46.50 Aligned_cols=29 Identities=14% Similarity=0.203 Sum_probs=24.8
Q ss_pred EEEEEcCCCceEEEEEcCCCCEEEEEEee
Q 022949 12 FLGFDSSTQSLKATVLDSNLNIVASEQLQ 40 (289)
Q Consensus 12 ~lgIDiGtt~iK~~l~d~~G~il~~~~~~ 40 (289)
+|.|..|+||+|++||+.++.++.+....
T Consensus 2 il~in~Gsts~k~alf~~~~~~~~~~~~~ 30 (351)
T TIGR02707 2 ILVINPGSTSTKLAVFEDERPLFEETLRH 30 (351)
T ss_pred EEEEecCchhheEEEEeCCCceeeeeecC
Confidence 78999999999999999999887754443
No 57
>PF13941 MutL: MutL protein
Probab=93.00 E-value=0.4 Score=46.35 Aligned_cols=51 Identities=20% Similarity=0.240 Sum_probs=38.9
Q ss_pred EEEEEcCCCceEEEEEc---CCCCEEEEEEeecccCCCccCCCCceeeCCCCCCCcCCChhHHHHHHHHHHHHHHhc
Q 022949 12 FLGFDSSTQSLKATVLD---SNLNIVASEQLQFDSELPHYKTKDGVYRDPSNNGRIVSPTLMWIEALDLMLQKLSKS 85 (289)
Q Consensus 12 ~lgIDiGtt~iK~~l~d---~~G~il~~~~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 85 (289)
+|.+|||+|-+|+.+|| .+.+++++++.++. ++ +. ++...+..+++.|.+.
T Consensus 2 ~L~~DiGST~Tk~~l~d~~~~~~~~ig~a~apTT-----------v~--~~----------Dv~~G~~~A~~~l~~~ 55 (457)
T PF13941_consen 2 VLVVDIGSTYTKVTLFDLVDGEPRLIGQAEAPTT-----------VE--PG----------DVTIGLNNALEQLEEQ 55 (457)
T ss_pred EEEEEeCCcceEEeEEeccCCccEEEEEEeCCCC-----------cC--cc----------cHHHHHHHHHHHHHHh
Confidence 67899999999999999 46788888877754 21 12 5667777788777654
No 58
>TIGR02529 EutJ ethanolamine utilization protein EutJ family protein.
Probab=92.98 E-value=0.4 Score=42.33 Aligned_cols=27 Identities=30% Similarity=0.255 Sum_probs=21.5
Q ss_pred EEEcCCCceEEEEEcCCCCEEEEEEee
Q 022949 14 GFDSSTQSLKATVLDSNLNIVASEQLQ 40 (289)
Q Consensus 14 gIDiGtt~iK~~l~d~~G~il~~~~~~ 40 (289)
||||||++||+++.+.+++.++....+
T Consensus 1 g~dig~~~ik~v~~~~~~~~~~~~~~~ 27 (239)
T TIGR02529 1 GVDLGTANIVIVVLDEDGQPVAGVMQF 27 (239)
T ss_pred CCCcccceEEEEEEecCCCEEEEEecc
Confidence 799999999999999887755555443
No 59
>PRK13317 pantothenate kinase; Provisional
Probab=92.61 E-value=0.16 Score=46.03 Aligned_cols=27 Identities=15% Similarity=0.185 Sum_probs=23.3
Q ss_pred ceEEEEEcCCCceEEEEEcCCCCEEEE
Q 022949 10 SLFLGFDSSTQSLKATVLDSNLNIVAS 36 (289)
Q Consensus 10 ~~~lgIDiGtt~iK~~l~d~~G~il~~ 36 (289)
.+.+|||+|+|.+|.+++|++++++..
T Consensus 2 ~~~iGIDiGstt~K~v~~~~~~~~~~~ 28 (277)
T PRK13317 2 EMKIGIDAGGTLTKIVYLEEKKQRTFK 28 (277)
T ss_pred CceEEEEeCcccEEEEEEcCCCeEEEE
Confidence 378999999999999999998877644
No 60
>PRK13324 pantothenate kinase; Reviewed
Probab=91.75 E-value=0.65 Score=41.57 Aligned_cols=64 Identities=22% Similarity=0.191 Sum_probs=38.3
Q ss_pred EEEEEcCCCceEEEEEcCCCCEEEEEEeecccCCCccCCCCceeeCCCCCCCcCCChhHHHHHHHHHHHHHHhcCCCCCE
Q 022949 12 FLGFDSSTQSLKATVLDSNLNIVASEQLQFDSELPHYKTKDGVYRDPSNNGRIVSPTLMWIEALDLMLQKLSKSLDLSKV 91 (289)
Q Consensus 12 ~lgIDiGtt~iK~~l~d~~G~il~~~~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~I 91 (289)
+|.||+|-|++|.+++|. ++++...+.++. + .....+ ++...+...++... .+..+|
T Consensus 2 iL~iDiGNT~ik~gl~~~-~~~~~~~r~~t~----~------~~~t~d----------e~~~~l~~~~~~~~--~~~~~i 58 (258)
T PRK13324 2 LLVMDMGNSHIHIGVFDG-DRIVSQIRYATS----S------VDSTSD----------QMGVFLRQALRENS--VDLGKI 58 (258)
T ss_pred EEEEEeCCCceEEEEEEC-CEEEEEEEEecC----c------cccchH----------HHHHHHHHHHHhcC--CCccCC
Confidence 789999999999999993 456554444331 0 111223 55555555443322 234467
Q ss_pred eEEEecc
Q 022949 92 TAVSGSG 98 (289)
Q Consensus 92 ~aIgis~ 98 (289)
.++.+|+
T Consensus 59 ~~viisS 65 (258)
T PRK13324 59 DGCGISS 65 (258)
T ss_pred CeEEEEe
Confidence 8888876
No 61
>PLN02914 hexokinase
Probab=91.48 E-value=0.45 Score=46.46 Aligned_cols=59 Identities=14% Similarity=0.192 Sum_probs=40.3
Q ss_pred ceEEEEEcCCCceEEEEEcCCC---CEEEEEEeecccCCCccCCCCceeeCCCCCCCcCCChhHHHHHHHHHHHHHHh
Q 022949 10 SLFLGFDSSTQSLKATVLDSNL---NIVASEQLQFDSELPHYKTKDGVYRDPSNNGRIVSPTLMWIEALDLMLQKLSK 84 (289)
Q Consensus 10 ~~~lgIDiGtt~iK~~l~d~~G---~il~~~~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~~~~~~~~~~~~~~l~~ 84 (289)
..|++||+|+||.|+++++..| +++...+..++. |.. ...-..+ ++++-+.++++...+
T Consensus 95 G~fLAlDlGGTNfRV~~V~L~g~~~~~~~~~~~~~~i--p~~----l~~gt~~----------eLFdfIA~~i~~fl~ 156 (490)
T PLN02914 95 GLFYALDLGGTNFRVLRVQLGGKDERVIATEFEQVSI--PQE----LMFGTSE----------ELFDFIASGLANFVA 156 (490)
T ss_pred eEEEEEecCCceEEEEEEEecCCCCceeeeeEEEecC--Chh----hccCCHH----------HHHHHHHHHHHHHHH
Confidence 4799999999999999999765 255555544442 221 1111223 899999999988664
No 62
>PLN02596 hexokinase-like
Probab=90.58 E-value=0.71 Score=45.09 Aligned_cols=60 Identities=12% Similarity=0.106 Sum_probs=39.3
Q ss_pred CceEEEEEcCCCceEEEEEcCCCC---EEEEEEeecccCCCccCCCCceeeCCCCCCCcCCChhHHHHHHHHHHHHHHh
Q 022949 9 DSLFLGFDSSTQSLKATVLDSNLN---IVASEQLQFDSELPHYKTKDGVYRDPSNNGRIVSPTLMWIEALDLMLQKLSK 84 (289)
Q Consensus 9 ~~~~lgIDiGtt~iK~~l~d~~G~---il~~~~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~~~~~~~~~~~~~~l~~ 84 (289)
...||+||+|+||.|+++++..|+ +....+..++. |.. ...-..+ ++++.+.++++...+
T Consensus 95 ~G~yLAlDlGGTNfRV~~V~L~g~~~~~~~~~~~~~~I--p~~----l~~~t~~----------eLFd~IA~~i~~fl~ 157 (490)
T PLN02596 95 KGLYYGLNLRGSNFLLLRARLGGKNEPISDLYREEISI--PSN----VLNGTSQ----------ELFDYIALELAKFVA 157 (490)
T ss_pred ceEEEEEeeCCceEEEEEEEEcCCCCceEEEEEEEecC--ChH----hhcCCHH----------HHHHHHHHHHHHHHH
Confidence 347899999999999999998764 33333443332 221 1111233 889999888887654
No 63
>COG3894 Uncharacterized metal-binding protein [General function prediction only]
Probab=90.53 E-value=0.35 Score=46.78 Aligned_cols=34 Identities=21% Similarity=0.277 Sum_probs=29.9
Q ss_pred CCCCceEEEEEcCCCceEEEEEcC-CCCEEEEEEe
Q 022949 6 LPKDSLFLGFDSSTQSLKATVLDS-NLNIVASEQL 39 (289)
Q Consensus 6 ~~~~~~~lgIDiGtt~iK~~l~d~-~G~il~~~~~ 39 (289)
++++.|=+++|+|||.+++-++|. +|++++++.-
T Consensus 160 ~~~~~YGvAvDlGTS~i~aqlVDL~sgevv~t~~T 194 (614)
T COG3894 160 LKNEAYGVAVDLGTSGIRAQLVDLKSGEVVATVIT 194 (614)
T ss_pred ccceeeeeEEecccceeeeEEEeccCCcEEEeeec
Confidence 577889999999999999999995 7999887754
No 64
>COG3734 DgoK 2-keto-3-deoxy-galactonokinase [Carbohydrate transport and metabolism]
Probab=90.52 E-value=0.43 Score=42.95 Aligned_cols=33 Identities=15% Similarity=0.287 Sum_probs=28.7
Q ss_pred CCCceEEEEEcCCCceEEEEEcCCCCEEEEEEe
Q 022949 7 PKDSLFLGFDSSTQSLKATVLDSNLNIVASEQL 39 (289)
Q Consensus 7 ~~~~~~lgIDiGtt~iK~~l~d~~G~il~~~~~ 39 (289)
|++.+++.||=||||.|+-|++.+|+++.+.+-
T Consensus 2 m~~~~~i~iDWGTT~~R~wL~~~dg~~l~~r~~ 34 (306)
T COG3734 2 MSEPAYIAIDWGTTNLRAWLVRGDGAVLAERRS 34 (306)
T ss_pred CCCceEEEEecCCccEEEEEEcCCcceeeeecc
Confidence 346889999999999999999999999886644
No 65
>PLN02405 hexokinase
Probab=90.41 E-value=0.72 Score=45.13 Aligned_cols=60 Identities=13% Similarity=0.135 Sum_probs=40.4
Q ss_pred CceEEEEEcCCCceEEEEEcCCC---CEEEEEEeecccCCCccCCCCceeeCCCCCCCcCCChhHHHHHHHHHHHHHHh
Q 022949 9 DSLFLGFDSSTQSLKATVLDSNL---NIVASEQLQFDSELPHYKTKDGVYRDPSNNGRIVSPTLMWIEALDLMLQKLSK 84 (289)
Q Consensus 9 ~~~~lgIDiGtt~iK~~l~d~~G---~il~~~~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~~~~~~~~~~~~~~l~~ 84 (289)
+..|++||+|+||.|++++...| .++...+..++. |.. ...-..+ ++++-+.++++...+
T Consensus 94 ~G~flAlDlGGTNfRV~~V~L~g~~~~~~~~~~~~~~i--p~~----~~~gt~~----------~LFdfIA~~i~~fl~ 156 (497)
T PLN02405 94 KGLFYALDLGGTNFRVLRVLLGGKDGRVVKQEFEEVSI--PPH----LMTGSSD----------ALFDFIAAALAKFVA 156 (497)
T ss_pred ceeEEEEecCCceEEEEEEEEcCCCCceeEEEEEEeec--Chh----hccCCHH----------HHHHHHHHHHHHHHH
Confidence 45899999999999999999765 245544444442 221 1111223 889999999988654
No 66
>TIGR01175 pilM type IV pilus assembly protein PilM. This protein is required for the assembly of the type IV fimbria in Pseudomonas aeruginosa responsible for twitching motility, and for a similar pilus-like structure in Synechocystis. It is also found in species such as Deinococcus described as having natural transformation (for which a type IV pilus-like structure is proposed) but not fimbria.
Probab=89.93 E-value=1.4 Score=40.70 Aligned_cols=34 Identities=21% Similarity=0.256 Sum_probs=24.4
Q ss_pred CceEEEEEcCCCceEEEEEcCCC---CEEEEEEeecc
Q 022949 9 DSLFLGFDSSTQSLKATVLDSNL---NIVASEQLQFD 42 (289)
Q Consensus 9 ~~~~lgIDiGtt~iK~~l~d~~G---~il~~~~~~~~ 42 (289)
+..++|||||++++|++.+...+ +++.....+.|
T Consensus 2 ~~~~vgiDIg~~~Ik~v~~~~~~~~~~v~~~~~~~~p 38 (348)
T TIGR01175 2 KSLLVGIDIGSTSVKVAQLKRSGDRYKLEHYAVEPLP 38 (348)
T ss_pred CCcEEEEEeccCeEEEEEEEecCCceEEEEEEEEECC
Confidence 35789999999999999998533 34444444544
No 67
>COG4820 EutJ Ethanolamine utilization protein, possible chaperonin [Amino acid transport and metabolism]
Probab=89.56 E-value=0.6 Score=40.15 Aligned_cols=32 Identities=28% Similarity=0.298 Sum_probs=28.2
Q ss_pred CCceEEEEEcCCCceEEEEEcCCCCEEEEEEe
Q 022949 8 KDSLFLGFDSSTQSLKATVLDSNLNIVASEQL 39 (289)
Q Consensus 8 ~~~~~lgIDiGtt~iK~~l~d~~G~il~~~~~ 39 (289)
+.++.+|+|+||.++-..++|.+|+.++....
T Consensus 27 ~sk~~vGVDLGT~~iV~~vlD~d~~Pvag~~~ 58 (277)
T COG4820 27 ESKLWVGVDLGTCDIVSMVLDRDGQPVAGCLD 58 (277)
T ss_pred cCceEEEeecccceEEEEEEcCCCCeEEEEeh
Confidence 45899999999999999999999999876543
No 68
>PLN02362 hexokinase
Probab=89.37 E-value=0.81 Score=44.93 Aligned_cols=60 Identities=7% Similarity=0.125 Sum_probs=38.2
Q ss_pred CceEEEEEcCCCceEEEEEcCCCC---EEEEEEeecccCCCccCCCCceeeCCCCCCCcCCChhHHHHHHHHHHHHHHh
Q 022949 9 DSLFLGFDSSTQSLKATVLDSNLN---IVASEQLQFDSELPHYKTKDGVYRDPSNNGRIVSPTLMWIEALDLMLQKLSK 84 (289)
Q Consensus 9 ~~~~lgIDiGtt~iK~~l~d~~G~---il~~~~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~~~~~~~~~~~~~~l~~ 84 (289)
+..|++||+|+||.|+++++..|+ ++...+..++. |.. -..-..+ ++++-+.++++...+
T Consensus 94 ~G~fLAlDlGGTNfRV~~V~L~g~~~~~~~~~~~~~~I--p~~----l~~~~~~----------eLFd~IA~~i~~fl~ 156 (509)
T PLN02362 94 IGTYYALDLGGTNFRVLRVQLGGQRSSILSQDVERHPI--PQH----LMNSTSE----------VLFDFIASSLKQFVE 156 (509)
T ss_pred ceeEEEEecCCceEEEEEEEecCCCcceeeceeEEEec--Chh----hccCCHH----------HHHHHHHHHHHHHHH
Confidence 457999999999999999997663 22222122321 221 1111223 889999999988654
No 69
>PF11104 PilM_2: Type IV pilus assembly protein PilM;; PDB: 2YCH_A.
Probab=88.82 E-value=1.5 Score=40.70 Aligned_cols=29 Identities=28% Similarity=0.354 Sum_probs=20.2
Q ss_pred EEEcCCCceEEEEEcCCCC---EEEEEEeecc
Q 022949 14 GFDSSTQSLKATVLDSNLN---IVASEQLQFD 42 (289)
Q Consensus 14 gIDiGtt~iK~~l~d~~G~---il~~~~~~~~ 42 (289)
|||||+.++|++-++.+++ +......++|
T Consensus 1 GiDiG~~siK~v~l~~~~~~~~l~~~~~~~~p 32 (340)
T PF11104_consen 1 GIDIGSSSIKAVELSKKGNRFQLEAFASIPLP 32 (340)
T ss_dssp EEEE-SSEEEEEEEETTTT--EEEEEEEEE--
T ss_pred CeecCCCeEEEEEEEEcCCccEEEEEEEEECC
Confidence 8999999999999997543 4455566655
No 70
>PTZ00107 hexokinase; Provisional
Probab=88.32 E-value=0.91 Score=44.12 Aligned_cols=68 Identities=10% Similarity=0.134 Sum_probs=38.7
Q ss_pred CceEEEEEcCCCceEEEEEcCCCC-EEEEEEeecccCCCccCCCC-ceeeCCCCCCCcCCChhHHHHHHHHHHHHHHh
Q 022949 9 DSLFLGFDSSTQSLKATVLDSNLN-IVASEQLQFDSELPHYKTKD-GVYRDPSNNGRIVSPTLMWIEALDLMLQKLSK 84 (289)
Q Consensus 9 ~~~~lgIDiGtt~iK~~l~d~~G~-il~~~~~~~~~~~~~~~~~g-~~e~d~~~~~~~~~~~~~~~~~~~~~~~~l~~ 84 (289)
...||+||+|+||.|++++...|+ .....+..+.. |..-..+ ....|- +...+++++.+.+++....+
T Consensus 73 ~G~fLAlDlGGTN~RV~~V~L~g~~~~~~~~~~~~i--p~~~~~~~~~~~~k------~~t~~~lFd~IA~~i~~fl~ 142 (464)
T PTZ00107 73 KGVYYAIDFGGTNFRAVRVSLRGGGKMERTQSKFSL--PKSALLGEKGLLDK------KATATDLFDHIAKSIKKMME 142 (464)
T ss_pred cceEEEEecCCceEEEEEEEeCCCCceeeEEEEEeC--CHHHhccccccccc------cCCHHHHHHHHHHHHHHHHH
Confidence 457999999999999999997654 33333322321 1110000 000000 01223889999999988654
No 71
>PF02685 Glucokinase: Glucokinase; InterPro: IPR003836 Glucokinases 2.7.1.2 from EC are found in invertebrates and microorganisms and are highly specific for glucose. These enzymes phosphorylate glucose using ATP as a donor to give glucose-6-phosphate and ADP [].; GO: 0004340 glucokinase activity, 0005524 ATP binding, 0006096 glycolysis, 0051156 glucose 6-phosphate metabolic process; PDB: 1SZ2_B 1Q18_B 2Q2R_B.
Probab=88.26 E-value=0.98 Score=41.67 Aligned_cols=104 Identities=13% Similarity=0.082 Sum_probs=57.6
Q ss_pred EEEEcCCCceEEEEEcCCCCE---EEEEEeecccCCCccCCCCceeeCCCCCCCcCCChhHHHHHHHHHHHHHHhcCCCC
Q 022949 13 LGFDSSTQSLKATVLDSNLNI---VASEQLQFDSELPHYKTKDGVYRDPSNNGRIVSPTLMWIEALDLMLQKLSKSLDLS 89 (289)
Q Consensus 13 lgIDiGtt~iK~~l~d~~G~i---l~~~~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 89 (289)
|+-|||+||+|.++++.++.. +...+++. .|-. .+.+.+.+.++.+......-
T Consensus 1 Lv~DIGGTn~Rlal~~~~~~~~~~~~~~~~~~--------------~~~~----------s~~~~l~~~l~~~~~~~~~p 56 (316)
T PF02685_consen 1 LVADIGGTNTRLALAEPDGGPLQLIDIRRYPS--------------ADFP----------SFEDALADYLAELDAGGPEP 56 (316)
T ss_dssp EEEEEETTEEEEEEEECTCGG-EEEEEEEEEG--------------CCCC----------HHHHHHHHHHHHTCHHHTCE
T ss_pred CeEEeCcccEEEEEEEcCCCCccccccEEEec--------------CCcC----------CHHHHHHHHHHhcccCCCcc
Confidence 467999999999999986543 33333322 1222 45556666665432111222
Q ss_pred CEeEEEeccCceeeEEecCCCcccccCCCCCCCccccccccCCCCCCCeeccCCcHHHH
Q 022949 90 KVTAVSGSGQQHGSVYWKKGSATILSSLDPKKPLVDQLGDAFSTKESPVWMDSSTTAQC 148 (289)
Q Consensus 90 ~I~aIgis~~~~~~v~~d~~g~~~~~~~~~~~~l~~~l~~~~~l~~~i~w~D~Ra~~~~ 148 (289)
+..+|+|.+ +++. +...+.+++|... .+.|+..|++.++.+-||--+..+.
T Consensus 57 ~~~~iavAG------PV~~-~~~~lTN~~W~i~-~~~l~~~lg~~~v~liNDfeA~a~g 107 (316)
T PF02685_consen 57 DSACIAVAG------PVRD-GKVRLTNLPWTID-ADELAQRLGIPRVRLINDFEAQAYG 107 (316)
T ss_dssp EEEEEEESS-------EET-TCEE-SSSCCEEE-HHHCHCCCT-TCEEEEEHHHHHHHH
T ss_pred ceEEEEEec------CccC-CEEEecCCCcccc-HHHHHHHhCCceEEEEcccchheec
Confidence 345566655 3443 3333445665422 3455666777777788888776654
No 72
>PRK13326 pantothenate kinase; Reviewed
Probab=87.98 E-value=1.2 Score=39.86 Aligned_cols=26 Identities=15% Similarity=0.043 Sum_probs=21.1
Q ss_pred ceEEEEEcCCCceEEEEEcCCCCEEEE
Q 022949 10 SLFLGFDSSTQSLKATVLDSNLNIVAS 36 (289)
Q Consensus 10 ~~~lgIDiGtt~iK~~l~d~~G~il~~ 36 (289)
..+|.||+|-|++|.++++. ++++..
T Consensus 6 ~~~L~IDiGNT~ik~glf~~-~~l~~~ 31 (262)
T PRK13326 6 SSQLIIDIGNTSISFALYKD-NKMQIF 31 (262)
T ss_pred cEEEEEEeCCCeEEEEEEEC-CEEEEE
Confidence 46789999999999999994 456553
No 73
>COG4972 PilM Tfp pilus assembly protein, ATPase PilM [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=87.82 E-value=1.4 Score=40.62 Aligned_cols=31 Identities=26% Similarity=0.220 Sum_probs=24.0
Q ss_pred CCCCCc--eEEEEEcCCCceEEEEEcCCCCEEE
Q 022949 5 SLPKDS--LFLGFDSSTQSLKATVLDSNLNIVA 35 (289)
Q Consensus 5 ~~~~~~--~~lgIDiGtt~iK~~l~d~~G~il~ 35 (289)
+|++++ ..+|||||+++||++-....|+-..
T Consensus 3 ~l~~k~~~~~vGIdI~~~sVKvvqLs~~g~~~k 35 (354)
T COG4972 3 SLFGKKLNAAVGIDIGSHSVKVVQLSRSGNRYK 35 (354)
T ss_pred chhcccccceeeEeeccceEEEEEEcccCCcee
Confidence 344443 6899999999999999997765443
No 74
>PRK13320 pantothenate kinase; Reviewed
Probab=87.82 E-value=2.3 Score=37.67 Aligned_cols=24 Identities=17% Similarity=0.252 Sum_probs=20.1
Q ss_pred eEEEEEcCCCceEEEEEcCCCCEEE
Q 022949 11 LFLGFDSSTQSLKATVLDSNLNIVA 35 (289)
Q Consensus 11 ~~lgIDiGtt~iK~~l~d~~G~il~ 35 (289)
++|.||+|.|++|.++++. ++++.
T Consensus 3 M~L~iDiGNT~ik~~~~~~-~~~~~ 26 (244)
T PRK13320 3 MNLVIDIGNTTTKLAVFEG-DELLE 26 (244)
T ss_pred eEEEEEeCCCcEEEEEEEC-CEEEE
Confidence 5899999999999999994 45554
No 75
>COG4020 Uncharacterized protein conserved in archaea [Function unknown]
Probab=87.80 E-value=2.4 Score=37.64 Aligned_cols=25 Identities=24% Similarity=0.490 Sum_probs=22.0
Q ss_pred CceEEEEEcCCCceEEEEEcCCCCE
Q 022949 9 DSLFLGFDSSTQSLKATVLDSNLNI 33 (289)
Q Consensus 9 ~~~~lgIDiGtt~iK~~l~d~~G~i 33 (289)
...++|||-|||++|++++|.++.+
T Consensus 2 ~m~fVGiDHGTsgi~~ai~d~e~~~ 26 (332)
T COG4020 2 TMMFVGIDHGTSGIKFAIYDGEKDP 26 (332)
T ss_pred ceEEEeecCCCcceEEEEEcCCCCc
Confidence 4579999999999999999987765
No 76
>TIGR00671 baf pantothenate kinase, type III. This model describes a family of proteins found in a single copy in at least ten different early completed bacterial genomes. The only characterized member of the family is Bvg accessory factor (Baf), a protein required, in addition to the regulatory operon bvgAS, for heterologous transcription of the Bordetella pertussis toxin operon (ptx) in E. coli.
Probab=87.76 E-value=1.4 Score=39.09 Aligned_cols=27 Identities=11% Similarity=0.026 Sum_probs=20.5
Q ss_pred EEEEcCCCceEEEEEcCCCCEEEEEEee
Q 022949 13 LGFDSSTQSLKATVLDSNLNIVASEQLQ 40 (289)
Q Consensus 13 lgIDiGtt~iK~~l~d~~G~il~~~~~~ 40 (289)
|.||+|-|++|.++++. ++++...+.+
T Consensus 2 L~iDiGNT~i~~g~~~~-~~~~~~~r~~ 28 (243)
T TIGR00671 2 LLIDVGNTRIVFALNSG-NKVYQFWRLA 28 (243)
T ss_pred EEEEECCCcEEEEEEEC-CEEEEEEEec
Confidence 68999999999999984 4565543333
No 77
>COG0849 ftsA Cell division ATPase FtsA [Cell division and chromosome partitioning]
Probab=87.49 E-value=4.5 Score=38.81 Aligned_cols=58 Identities=21% Similarity=0.245 Sum_probs=36.6
Q ss_pred eEEEEEcCCCceEEEEEcC--CCC--EEEEEEeecccCCCccCCCCceeeCCCCCCCcCCChhHHHHHHHHHHHHHHh
Q 022949 11 LFLGFDSSTQSLKATVLDS--NLN--IVASEQLQFDSELPHYKTKDGVYRDPSNNGRIVSPTLMWIEALDLMLQKLSK 84 (289)
Q Consensus 11 ~~lgIDiGtt~iK~~l~d~--~G~--il~~~~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~~~~~~~~~~~~~~l~~ 84 (289)
++.|+||||+++++++--. +|+ ++...+.+ ..|-+...-.|.+ ...+++..+++++.+
T Consensus 7 ~iv~LDIGTskV~~lVge~~~~g~i~iig~g~~~------SrGik~G~I~di~----------~~~~sI~~av~~AE~ 68 (418)
T COG0849 7 LIVGLDIGTSKVKALVGELRPDGRLNIIGVGSHP------SRGIKKGVIVDLD----------AAAQSIKKAVEAAER 68 (418)
T ss_pred eEEEEEccCcEEEEEEEEEcCCCeEEEEeeeccc------CcccccceEEcHH----------HHHHHHHHHHHHHHH
Confidence 8999999999999999773 442 23322222 1121223556666 677777777776654
No 78
>PRK00976 hypothetical protein; Provisional
Probab=86.91 E-value=1.8 Score=40.00 Aligned_cols=19 Identities=21% Similarity=0.667 Sum_probs=17.2
Q ss_pred ceEEEEEcCCCceEEEEEc
Q 022949 10 SLFLGFDSSTQSLKATVLD 28 (289)
Q Consensus 10 ~~~lgIDiGtt~iK~~l~d 28 (289)
.+|+|||-|||++|.++++
T Consensus 1 ~~~~g~dhgt~~~~~~~~~ 19 (326)
T PRK00976 1 MMFVGIDHGTTGIRFAIIE 19 (326)
T ss_pred CeEEeecCCCccEEEEEEc
Confidence 3689999999999999994
No 79
>TIGR00555 panK_eukar pantothenate kinase, eukaryotic/staphyloccocal type. This model describes a eukaryotic form of pantothenate kinase, characterized from the fungus Aspergillus nidulans and with similar forms known in several other eukaryotes. It also includes forms from several Gram-positive bacteria suggested to have originated from the eukaryotic form by lateral transfer. It differs in a number of biochemical properties (such as inhibition by acetyl-CoA) from most bacterial CoaA and lacks sequence similarity. This enzyme is the key regulatory step in the biosynthesis of coenzyme A (CoA).
Probab=84.99 E-value=1.4 Score=39.94 Aligned_cols=25 Identities=12% Similarity=0.042 Sum_probs=22.0
Q ss_pred EEEEEcCCCceEEEEEcCCCCEEEE
Q 022949 12 FLGFDSSTQSLKATVLDSNLNIVAS 36 (289)
Q Consensus 12 ~lgIDiGtt~iK~~l~d~~G~il~~ 36 (289)
.+|||+|+|-+|.+..|++++++-.
T Consensus 2 ~iGiDiGgT~~Kiv~~~~~~~~~f~ 26 (279)
T TIGR00555 2 RIGIDIGGTLIKVVYEEPKGRRKFK 26 (279)
T ss_pred eEEEEeCcceEEEEEEcCCCcEEEE
Confidence 5899999999999999999987643
No 80
>COG0145 HyuA N-methylhydantoinase A/acetone carboxylase, beta subunit [Amino acid transport and metabolism / Secondary metabolites biosynthesis, transport, and catabolism]
Probab=84.75 E-value=3.8 Score=41.73 Aligned_cols=32 Identities=22% Similarity=0.274 Sum_probs=26.4
Q ss_pred ceEEEEEcCCCceEEEEEcCCCCEEEEEEeec
Q 022949 10 SLFLGFDSSTQSLKATVLDSNLNIVASEQLQF 41 (289)
Q Consensus 10 ~~~lgIDiGtt~iK~~l~d~~G~il~~~~~~~ 41 (289)
++.+|||+|+|.+=++++|.++.++......+
T Consensus 2 ~~~iGID~GGTfTDaV~~~~~~g~~~~~K~lT 33 (674)
T COG0145 2 MLRIGIDVGGTFTDAVLLDEDGGVLATIKVLT 33 (674)
T ss_pred ceEEEEEcCCCcEeEEEEeCCCCEEEEEEccC
Confidence 57899999999999999998876766665543
No 81
>PLN02666 5-oxoprolinase
Probab=84.26 E-value=2.8 Score=45.69 Aligned_cols=84 Identities=6% Similarity=-0.016 Sum_probs=49.9
Q ss_pred CCCceEEEEEcCCCceEEEEEcCCCCEEEEEEeecccCCCccCCCCceeeCCCCCCCcCCChhHHHHHHHHHHHHHH---
Q 022949 7 PKDSLFLGFDSSTQSLKATVLDSNLNIVASEQLQFDSELPHYKTKDGVYRDPSNNGRIVSPTLMWIEALDLMLQKLS--- 83 (289)
Q Consensus 7 ~~~~~~lgIDiGtt~iK~~l~d~~G~il~~~~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~~~~~~~~~~~~~~l~--- 83 (289)
-+..|.+|||+|+|-+-++++|.++.-+...+.++. .| .||.+ .+.+.+..+++.+.
T Consensus 6 ~~~~~rigIDvGGTFTD~v~~~~~~~~~~~~K~~st--tp---------~d~~~---------gv~~Gi~~~l~~~~~~~ 65 (1275)
T PLN02666 6 GSRKFRFCIDRGGTFTDVYAEVPGGSDFRVLKLLSV--DP---------ANYDD---------APREGIRRILEEVTGKK 65 (1275)
T ss_pred CCCCEEEEEECCcCCEeEEEEecCCCeEEEEEeCCC--CC---------CChhH---------HHHHHHHHHHHHHhcCC
Confidence 357899999999999999999987653434444321 11 23331 56677777766653
Q ss_pred ---hc-CCCCCEeEEEeccCceeeEEecCCC
Q 022949 84 ---KS-LDLSKVTAVSGSGQQHGSVYWKKGS 110 (289)
Q Consensus 84 ---~~-~~~~~I~aIgis~~~~~~v~~d~~g 110 (289)
.. .+..+|..|..+++..+=.++.++|
T Consensus 66 ~~~~~~~~~~~i~~v~hGTT~atNAllerkG 96 (1275)
T PLN02666 66 IPRSAKIPTERIEWIRMGTTVATNALLERKG 96 (1275)
T ss_pred cccccCCChHHccEEEEechHHHHHHHhccC
Confidence 11 3345677777766533333333334
No 82
>PRK03011 butyrate kinase; Provisional
Probab=83.75 E-value=2.6 Score=39.55 Aligned_cols=31 Identities=19% Similarity=0.293 Sum_probs=23.2
Q ss_pred eEEEEEcCCCceEEEEEcCCCCEEEEEEeecc
Q 022949 11 LFLGFDSSTQSLKATVLDSNLNIVASEQLQFD 42 (289)
Q Consensus 11 ~~lgIDiGtt~iK~~l~d~~G~il~~~~~~~~ 42 (289)
.+|.|.-|+||+|.++|+.+ +.+......++
T Consensus 3 ~il~inpgststk~a~~~~~-~~~~~~~~~h~ 33 (358)
T PRK03011 3 RILVINPGSTSTKIAVFEDE-KPIFEETLRHS 33 (358)
T ss_pred EEEEEcCCCchheEEEEcCC-ceeeeeccccC
Confidence 48999999999999999744 44555555443
No 83
>PRK11031 guanosine pentaphosphate phosphohydrolase; Provisional
Probab=83.75 E-value=4.1 Score=39.98 Aligned_cols=26 Identities=19% Similarity=0.282 Sum_probs=21.9
Q ss_pred CCCceEEEEEcCCCceEEEEEcC-CCC
Q 022949 7 PKDSLFLGFDSSTQSLKATVLDS-NLN 32 (289)
Q Consensus 7 ~~~~~~lgIDiGtt~iK~~l~d~-~G~ 32 (289)
++.+++.+|||||.|+|..+++. +|.
T Consensus 3 ~~~~~~A~IDIGSNSirL~I~~~~~~~ 29 (496)
T PRK11031 3 SSSSLYAAIDLGSNSFHMLVVREVAGS 29 (496)
T ss_pred CCCCEEEEEEccccceeEEEEEecCCc
Confidence 45778999999999999999995 343
No 84
>PF07318 DUF1464: Protein of unknown function (DUF1464); InterPro: IPR009927 This family consists of several hypothetical archaeal proteins of around 350 residues in length. The function of this family is unknown.
Probab=80.75 E-value=1.4 Score=40.91 Aligned_cols=29 Identities=21% Similarity=0.315 Sum_probs=26.1
Q ss_pred EEEcCCCceEEEEEcCCCCEEEEEEeecc
Q 022949 14 GFDSSTQSLKATVLDSNLNIVASEQLQFD 42 (289)
Q Consensus 14 gIDiGtt~iK~~l~d~~G~il~~~~~~~~ 42 (289)
|||=||+|...+.+|++|+++...+.|..
T Consensus 1 GIDpGT~s~dv~~~dd~g~v~~~~~ipt~ 29 (343)
T PF07318_consen 1 GIDPGTKSFDVCGLDDDGKVIFYFSIPTE 29 (343)
T ss_pred CCCCCCCcEEEEEEccCCcEEEEeeccHH
Confidence 79999999999999999999988877654
No 85
>PRK10854 exopolyphosphatase; Provisional
Probab=79.85 E-value=7.3 Score=38.38 Aligned_cols=33 Identities=12% Similarity=0.162 Sum_probs=24.0
Q ss_pred CCceEEEEEcCCCceEEEEEcCC-C--CEEEEEEee
Q 022949 8 KDSLFLGFDSSTQSLKATVLDSN-L--NIVASEQLQ 40 (289)
Q Consensus 8 ~~~~~lgIDiGtt~iK~~l~d~~-G--~il~~~~~~ 40 (289)
....+.+|||||.|+|..+++.+ | +++.+.+..
T Consensus 9 ~~~~~A~IDIGSNSirL~I~e~~~~~~~~i~~~k~~ 44 (513)
T PRK10854 9 RPQEFAAVDLGSNSFHMVIARVVDGAMQIIGRLKQR 44 (513)
T ss_pred CCCEEEEEEeccchheEEEEEecCCcEEEeeeeeEE
Confidence 45678999999999999999953 4 344444333
No 86
>PRK11678 putative chaperone; Provisional
Probab=79.50 E-value=1.5 Score=42.45 Aligned_cols=17 Identities=35% Similarity=0.686 Sum_probs=16.1
Q ss_pred EEEEEcCCCceEEEEEc
Q 022949 12 FLGFDSSTQSLKATVLD 28 (289)
Q Consensus 12 ~lgIDiGtt~iK~~l~d 28 (289)
++|||+||||.-+++++
T Consensus 2 ~iGID~GTtNs~va~~~ 18 (450)
T PRK11678 2 FIGFDYGTANCSVAVMR 18 (450)
T ss_pred eEEEecCccceeeEEee
Confidence 68999999999999997
No 87
>PTZ00009 heat shock 70 kDa protein; Provisional
Probab=78.05 E-value=2.1 Score=43.43 Aligned_cols=23 Identities=17% Similarity=0.092 Sum_probs=19.6
Q ss_pred CCCceEEEEEcCCCceEEEEEcC
Q 022949 7 PKDSLFLGFDSSTQSLKATVLDS 29 (289)
Q Consensus 7 ~~~~~~lgIDiGtt~iK~~l~d~ 29 (289)
|++..++|||+|||++++++++.
T Consensus 1 ~~~~~~iGIDlGTt~s~va~~~~ 23 (653)
T PTZ00009 1 MTKGPAIGIDLGTTYSCVGVWKN 23 (653)
T ss_pred CCcccEEEEEeCcccEEEEEEeC
Confidence 45667899999999999999864
No 88
>COG0443 DnaK Molecular chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=78.00 E-value=2.8 Score=42.02 Aligned_cols=23 Identities=17% Similarity=0.167 Sum_probs=20.1
Q ss_pred CceEEEEEcCCCceEEEEEcCCC
Q 022949 9 DSLFLGFDSSTQSLKATVLDSNL 31 (289)
Q Consensus 9 ~~~~lgIDiGtt~iK~~l~d~~G 31 (289)
.+.++|||+||||+.+++++.++
T Consensus 4 ~~~~iGIDlGTTNS~vA~~~~~~ 26 (579)
T COG0443 4 AKKAIGIDLGTTNSVVAVMRGGG 26 (579)
T ss_pred CceEEEEEcCCCcEEEEEEeCCC
Confidence 35799999999999999999764
No 89
>COG5026 Hexokinase [Carbohydrate transport and metabolism]
Probab=77.88 E-value=2.3 Score=40.64 Aligned_cols=25 Identities=12% Similarity=0.114 Sum_probs=21.0
Q ss_pred CCCceEEEEEcCCCceEEEEEcCCC
Q 022949 7 PKDSLFLGFDSSTQSLKATVLDSNL 31 (289)
Q Consensus 7 ~~~~~~lgIDiGtt~iK~~l~d~~G 31 (289)
++..-+|+||+|+||.|++++...|
T Consensus 72 ~e~g~~LaiD~GGTnlRvc~V~l~g 96 (466)
T COG5026 72 NESGSVLAIDLGGTNLRVCLVVLGG 96 (466)
T ss_pred CCCCCEEEEecCCceEEEEEEEeCC
Confidence 3456799999999999999998643
No 90
>PF00871 Acetate_kinase: Acetokinase family; InterPro: IPR000890 Acetate kinase, which is predominantly found in micro-organisms, facilitates the production of acetyl-CoA by phosphorylating acetate in the presence of ATP and a divalent cation [, ]. The enzyme is important in the process of glycolysis, enzyme levels being increased in the presence of excess glucose. The growth of a bacterial mutant lacking acetate kinase has been shown to be inhibited by glucose, suggesting that the enzyme is involved in excretion of excess carbohydrate []. A related enzyme, butyrate kinase, facilitates the formation of butyryl-CoA by phosphorylating butyrate in the presence of ATP to form butyryl phosphate [].; GO: 0016301 kinase activity, 0016774 phosphotransferase activity, carboxyl group as acceptor, 0008152 metabolic process, 0016310 phosphorylation, 0005622 intracellular; PDB: 3P4I_B 3R9P_B 2IIR_J 1SAZ_A 1X9J_D 4DQ8_B 1TUU_A 1TUY_B 1G99_A 1X3N_A ....
Probab=77.64 E-value=9.1 Score=36.37 Aligned_cols=29 Identities=21% Similarity=0.303 Sum_probs=23.7
Q ss_pred EEEEEcCCCceEEEEEcCC-CCEEEEEEee
Q 022949 12 FLGFDSSTQSLKATVLDSN-LNIVASEQLQ 40 (289)
Q Consensus 12 ~lgIDiGtt~iK~~l~d~~-G~il~~~~~~ 40 (289)
+|.|..|+||+|.+||+.+ .+++.+....
T Consensus 2 ILVIN~GSSS~Kfalf~~~~~~~l~~g~~e 31 (388)
T PF00871_consen 2 ILVINPGSSSTKFALFDMDSGEVLASGLVE 31 (388)
T ss_dssp EEEEEEESSEEEEEEEETTTTEEEEEEEEE
T ss_pred EEEEcCChHhheeeeEECCCCCeeeechhe
Confidence 6899999999999999974 6777665554
No 91
>COG1521 Pantothenate kinase type III (Bvg accessory factor family protein) [Transcription]
Probab=77.05 E-value=5.7 Score=35.38 Aligned_cols=29 Identities=14% Similarity=0.157 Sum_probs=23.2
Q ss_pred EEEEEcCCCceEEEEEcCCCCEEEEEEeec
Q 022949 12 FLGFDSSTQSLKATVLDSNLNIVASEQLQF 41 (289)
Q Consensus 12 ~lgIDiGtt~iK~~l~d~~G~il~~~~~~~ 41 (289)
+|.||+|.|+++.++++ ++++...-+..+
T Consensus 2 ~L~iDiGNT~~~~a~~~-~~~~~~~~r~~t 30 (251)
T COG1521 2 LLLIDIGNTRIVFALYE-GGKVVQTWRLAT 30 (251)
T ss_pred eEEEEeCCCeEEEEEec-CCeEEEEEeecc
Confidence 68899999999999998 666666555544
No 92
>PRK00290 dnaK molecular chaperone DnaK; Provisional
Probab=76.05 E-value=2.2 Score=43.01 Aligned_cols=19 Identities=21% Similarity=0.366 Sum_probs=17.3
Q ss_pred eEEEEEcCCCceEEEEEcC
Q 022949 11 LFLGFDSSTQSLKATVLDS 29 (289)
Q Consensus 11 ~~lgIDiGtt~iK~~l~d~ 29 (289)
.++|||+|||++++++++.
T Consensus 3 ~viGIDlGTt~s~va~~~~ 21 (627)
T PRK00290 3 KIIGIDLGTTNSCVAVMEG 21 (627)
T ss_pred cEEEEEeCcccEEEEEEEC
Confidence 5899999999999999974
No 93
>TIGR03706 exo_poly_only exopolyphosphatase. It appears that a single enzyme may act as both exopolyphosphatase (Ppx) and guanosine pentaphosphate phosphohydrolase (GppA) in a number of species. Members of the seed alignment use to define this exception-level model are encoded adjacent to a polyphosphate kinase 1 gene, and the trusted cutoff is set high enough (425) that no genome has a second hit. Therefore all members may be presumed to at least share exopolyphospatase activity, and may lack GppA activity. GppA acts in the stringent response.
Probab=75.71 E-value=9.4 Score=34.75 Aligned_cols=19 Identities=11% Similarity=0.214 Sum_probs=16.9
Q ss_pred EEEEEcCCCceEEEEEcCC
Q 022949 12 FLGFDSSTQSLKATVLDSN 30 (289)
Q Consensus 12 ~lgIDiGtt~iK~~l~d~~ 30 (289)
+.+||+||.++|..+++..
T Consensus 2 ~AvIDiGSNsirl~I~~~~ 20 (300)
T TIGR03706 2 IAAIDIGSNSVRLVIARGV 20 (300)
T ss_pred eEEEEecCCeeeEEEEEec
Confidence 5789999999999999963
No 94
>COG1548 Predicted transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism]
Probab=75.69 E-value=7.4 Score=34.84 Aligned_cols=25 Identities=20% Similarity=0.150 Sum_probs=19.9
Q ss_pred CceEEEEEcCCCceEEEEEcCCCCEEE
Q 022949 9 DSLFLGFDSSTQSLKATVLDSNLNIVA 35 (289)
Q Consensus 9 ~~~~lgIDiGtt~iK~~l~d~~G~il~ 35 (289)
+..++|||||+-|+|++. .+|.+..
T Consensus 2 ~~kilGiDIGGAntk~a~--~DG~~~~ 26 (330)
T COG1548 2 KMKILGIDIGGANTKIAS--SDGDNYK 26 (330)
T ss_pred CceEEEeeccCccchhhh--ccCCeee
Confidence 345899999999999998 5666554
No 95
>TIGR03281 methan_mark_12 putative methanogenesis marker protein 12. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it.
Probab=74.76 E-value=2.4 Score=38.75 Aligned_cols=23 Identities=26% Similarity=0.573 Sum_probs=20.3
Q ss_pred EEEEEcCCCceEEEEEcCCCCEE
Q 022949 12 FLGFDSSTQSLKATVLDSNLNIV 34 (289)
Q Consensus 12 ~lgIDiGtt~iK~~l~d~~G~il 34 (289)
|+|||-|||++|+++++.+++..
T Consensus 1 ~vGiDHGTtgi~f~~~~~~~~~~ 23 (326)
T TIGR03281 1 FVGIDHGTTGIRFAIIDGEKEPV 23 (326)
T ss_pred CccccCCCccEEEEEecCCcceE
Confidence 58999999999999999888653
No 96
>PRK05183 hscA chaperone protein HscA; Provisional
Probab=74.71 E-value=2.8 Score=42.30 Aligned_cols=21 Identities=24% Similarity=0.275 Sum_probs=18.2
Q ss_pred CceEEEEEcCCCceEEEEEcC
Q 022949 9 DSLFLGFDSSTQSLKATVLDS 29 (289)
Q Consensus 9 ~~~~lgIDiGtt~iK~~l~d~ 29 (289)
..+++|||+|||++++++++.
T Consensus 18 ~~~~iGIDlGTt~s~va~~~~ 38 (616)
T PRK05183 18 RRLAVGIDLGTTNSLVATVRS 38 (616)
T ss_pred CCeEEEEEeccccEEEEEEEC
Confidence 348999999999999999853
No 97
>PF05035 DGOK: 2-keto-3-deoxy-galactonokinase; InterPro: IPR007729 2-keto-3-deoxy-galactonokinase 2.7.1.58 from EC is a bacterial transferase that catalyses the second step in D-galactonate degradation. ATP + 2-dehydro-3-deoxy-D-galactonate = ADP + 2-dehydro-3-deoxy-D-galactonate 6-phosphate D-Galactonate is catabolized in saprophytic mycobacteria to give pyruvate and glyceraldehyde-3-phosphate by a pathway that involves galactonate dehydratase, 2-keto-3-deoxy-galactonate kinase, and 6-phospho-2-keto-3-deoxy-galactonate aldolase [].; PDB: 3R1X_D 3T69_B.
Probab=74.64 E-value=3.2 Score=37.78 Aligned_cols=27 Identities=22% Similarity=0.310 Sum_probs=20.0
Q ss_pred EcCCCceEEEEEcCCCCEEEEEEeecc
Q 022949 16 DSSTQSLKATVLDSNLNIVASEQLQFD 42 (289)
Q Consensus 16 DiGtt~iK~~l~d~~G~il~~~~~~~~ 42 (289)
|-||||.|+-++|.+|+++++.+.+..
T Consensus 1 DWGTSnlR~~l~~~~g~vl~~~~~~~G 27 (287)
T PF05035_consen 1 DWGTSNLRAWLMDEDGQVLAERSSPVG 27 (287)
T ss_dssp EE-SS-EEEEEE-CTTEEEEEEEES--
T ss_pred CCchhhhhhheecCCCcEEeeecCCcC
Confidence 789999999999999999998876543
No 98
>PF14450 FtsA: Cell division protein FtsA; PDB: 1E4F_T 4A2B_A 4A2A_A 1E4G_T.
Probab=72.96 E-value=3.9 Score=31.88 Aligned_cols=18 Identities=11% Similarity=0.248 Sum_probs=15.4
Q ss_pred EEEEEcCCCceEEEEEcC
Q 022949 12 FLGFDSSTQSLKATVLDS 29 (289)
Q Consensus 12 ~lgIDiGtt~iK~~l~d~ 29 (289)
+++||+|++.++++++..
T Consensus 1 i~~iDiGs~~~~~~i~~~ 18 (120)
T PF14450_consen 1 IVVIDIGSSKTKVAIAED 18 (120)
T ss_dssp EEEEEE-SSSEEEEEEET
T ss_pred CEEEEcCCCcEEEEEEEe
Confidence 578999999999999975
No 99
>TIGR02350 prok_dnaK chaperone protein DnaK. Members of this family are the chaperone DnaK, of the DnaK-DnaJ-GrpE chaperone system. All members of the seed alignment were taken from completely sequenced bacterial or archaeal genomes and (except for Mycoplasma sequence) found clustered with other genes of this systems. This model excludes DnaK homologs that are not DnaK itself, such as the heat shock cognate protein HscA (TIGR01991). However, it is not designed to distinguish among DnaK paralogs in eukaryotes. Note that a number of dnaK genes have shadow ORFs in the same reverse (relative to dnaK) reading frame, a few of which have been assigned glutamate dehydrogenase activity. The significance of this observation is unclear; lengths of such shadow ORFs are highly variable as if the presumptive protein product is not conserved.
Probab=72.91 E-value=2.9 Score=41.89 Aligned_cols=19 Identities=21% Similarity=0.366 Sum_probs=17.0
Q ss_pred eEEEEEcCCCceEEEEEcC
Q 022949 11 LFLGFDSSTQSLKATVLDS 29 (289)
Q Consensus 11 ~~lgIDiGtt~iK~~l~d~ 29 (289)
.++|||+|||++++++++.
T Consensus 1 ~viGIDlGtt~s~va~~~~ 19 (595)
T TIGR02350 1 KIIGIDLGTTNSCVAVMEG 19 (595)
T ss_pred CEEEEEeCcccEEEEEEEC
Confidence 3799999999999999974
No 100
>PTZ00186 heat shock 70 kDa precursor protein; Provisional
Probab=72.43 E-value=3.8 Score=41.73 Aligned_cols=21 Identities=19% Similarity=0.248 Sum_probs=18.4
Q ss_pred ceEEEEEcCCCceEEEEEcCC
Q 022949 10 SLFLGFDSSTQSLKATVLDSN 30 (289)
Q Consensus 10 ~~~lgIDiGtt~iK~~l~d~~ 30 (289)
..++|||+|||++.+++++..
T Consensus 27 ~~viGIDLGTTnS~vA~~~~~ 47 (657)
T PTZ00186 27 GDVIGVDLGTTYSCVATMDGD 47 (657)
T ss_pred ceEEEEEeCcCeEEEEEEeCC
Confidence 479999999999999999753
No 101
>PF00012 HSP70: Hsp70 protein; InterPro: IPR013126 Heat shock proteins, Hsp70 chaperones help to fold many proteins. Hsp70 assisted folding involves repeated cycles of substrate binding and release. Hsp70 activity is ATP dependent. Hsp70 proteins are made up of two regions: the amino terminus is the ATPase domain and the carboxyl terminus is the substrate binding region []. Hsp70 proteins have an average molecular weight of 70 kDa [, , ]. In most species,there are many proteins that belong to the hsp70 family. Some of these are only expressed under stress conditions (strictly inducible), while some are present in cells under normal growth conditions and are not heat-inducible (constitutive or cognate) [, ]. Hsp70 proteins can be found in different cellular compartments(nuclear, cytosolic, mitochondrial, endoplasmic reticulum, for example).; PDB: 2P32_D 3D2F_A 2QXL_A 3D2E_C 3C7N_A 3FE1_C 4ANI_C 2V7Y_A 2KHO_A 3DPQ_B ....
Probab=72.39 E-value=2.7 Score=41.89 Aligned_cols=18 Identities=28% Similarity=0.473 Sum_probs=15.4
Q ss_pred EEEEEcCCCceEEEEEcC
Q 022949 12 FLGFDSSTQSLKATVLDS 29 (289)
Q Consensus 12 ~lgIDiGtt~iK~~l~d~ 29 (289)
++|||+|||++++++++.
T Consensus 1 viGID~Gt~~~~va~~~~ 18 (602)
T PF00012_consen 1 VIGIDLGTTNSKVAVFKN 18 (602)
T ss_dssp EEEEEE-SSEEEEEEEET
T ss_pred CEEEEeccCCEEEEEEEe
Confidence 689999999999999874
No 102
>PF01548 DEDD_Tnp_IS110: Transposase; InterPro: IPR002525 Transposase proteins are necessary for efficient DNA transposition. This entry represents the N-terminal region of the pilin gene inverting protein (PIVML) and members of the IS111A/IS1328/IS1533 family of transposases [, ]. More information about these proteins can be found at Protein of the Month: Transposase [].; GO: 0003677 DNA binding, 0004803 transposase activity, 0006313 transposition, DNA-mediated
Probab=72.38 E-value=8.1 Score=30.68 Aligned_cols=29 Identities=24% Similarity=0.401 Sum_probs=24.4
Q ss_pred EEEEEcCCCceEEEEEcCCCCEEEEEEee
Q 022949 12 FLGFDSSTQSLKATVLDSNLNIVASEQLQ 40 (289)
Q Consensus 12 ~lgIDiGtt~iK~~l~d~~G~il~~~~~~ 40 (289)
|+|||+|....-++++|.+|.++.....+
T Consensus 1 ~vGiDv~k~~~~v~v~~~~~~~~~~~~~~ 29 (144)
T PF01548_consen 1 FVGIDVSKDTHDVCVIDPNGEKLRRFKFE 29 (144)
T ss_pred eEEEEcccCeEEEEEEcCCCcEEEEEEEe
Confidence 68999999999999999999766655444
No 103
>CHL00094 dnaK heat shock protein 70
Probab=71.86 E-value=3.2 Score=41.91 Aligned_cols=21 Identities=19% Similarity=0.262 Sum_probs=18.2
Q ss_pred eEEEEEcCCCceEEEEEcCCCC
Q 022949 11 LFLGFDSSTQSLKATVLDSNLN 32 (289)
Q Consensus 11 ~~lgIDiGtt~iK~~l~d~~G~ 32 (289)
+++|||+|||++++++++. |+
T Consensus 3 ~viGIDlGTt~s~va~~~~-g~ 23 (621)
T CHL00094 3 KVVGIDLGTTNSVVAVMEG-GK 23 (621)
T ss_pred ceEEEEeCcccEEEEEEEC-CE
Confidence 6899999999999999963 44
No 104
>PRK12440 acetate kinase; Reviewed
Probab=71.48 E-value=6.8 Score=37.26 Aligned_cols=33 Identities=33% Similarity=0.254 Sum_probs=26.3
Q ss_pred CCCceEEEEEcCCCceEEEEEcC-CCCEEEEEEe
Q 022949 7 PKDSLFLGFDSSTQSLKATVLDS-NLNIVASEQL 39 (289)
Q Consensus 7 ~~~~~~lgIDiGtt~iK~~l~d~-~G~il~~~~~ 39 (289)
|+.+++|.|..|+||+|..|||. ..+++.+...
T Consensus 1 ~~~~~ILviN~GSSSlKf~l~~~~~~~~l~~G~~ 34 (397)
T PRK12440 1 MSNSYVLVINSGSSSLKFAVIDSVTGEAVLSGLG 34 (397)
T ss_pred CCCCEEEEEECChHhheEEEEecCCCceEEEEEE
Confidence 56789999999999999999995 4456655443
No 105
>PRK13410 molecular chaperone DnaK; Provisional
Probab=70.47 E-value=4 Score=41.62 Aligned_cols=22 Identities=18% Similarity=0.223 Sum_probs=18.6
Q ss_pred eEEEEEcCCCceEEEEEcCCCCE
Q 022949 11 LFLGFDSSTQSLKATVLDSNLNI 33 (289)
Q Consensus 11 ~~lgIDiGtt~iK~~l~d~~G~i 33 (289)
.++|||+|||++++++++. |++
T Consensus 3 ~viGIDlGTt~s~va~~~~-g~~ 24 (668)
T PRK13410 3 RIVGIDLGTTNSVVAVMEG-GKP 24 (668)
T ss_pred cEEEEEeCCCcEEEEEEEC-CeE
Confidence 5899999999999999974 543
No 106
>COG0248 GppA Exopolyphosphatase [Nucleotide transport and metabolism / Inorganic ion transport and metabolism]
Probab=70.21 E-value=7 Score=38.35 Aligned_cols=22 Identities=14% Similarity=0.187 Sum_probs=19.3
Q ss_pred CceEEEEEcCCCceEEEEEcCC
Q 022949 9 DSLFLGFDSSTQSLKATVLDSN 30 (289)
Q Consensus 9 ~~~~lgIDiGtt~iK~~l~d~~ 30 (289)
.+.+.+||+||.|+|.++++..
T Consensus 2 ~~~~A~IDiGSNS~rlvV~~~~ 23 (492)
T COG0248 2 ARRVAAIDLGSNSFRLVVAEIT 23 (492)
T ss_pred CceEEEEEecCCeEEEEEEecc
Confidence 4578899999999999999954
No 107
>PTZ00400 DnaK-type molecular chaperone; Provisional
Probab=70.14 E-value=4 Score=41.59 Aligned_cols=19 Identities=16% Similarity=0.310 Sum_probs=17.0
Q ss_pred eEEEEEcCCCceEEEEEcC
Q 022949 11 LFLGFDSSTQSLKATVLDS 29 (289)
Q Consensus 11 ~~lgIDiGtt~iK~~l~d~ 29 (289)
.++|||+|||++++++++.
T Consensus 42 ~viGIDlGTt~s~va~~~~ 60 (663)
T PTZ00400 42 DIVGIDLGTTNSCVAIMEG 60 (663)
T ss_pred cEEEEEECcccEEEEEEeC
Confidence 5899999999999999863
No 108
>PF04312 DUF460: Protein of unknown function (DUF460); InterPro: IPR007408 This is an archaeal protein of unknown function.
Probab=69.94 E-value=10 Score=30.56 Aligned_cols=32 Identities=19% Similarity=0.332 Sum_probs=25.4
Q ss_pred CCceEEEEEcCCCceEEEEEcCCCCEEEEEEee
Q 022949 8 KDSLFLGFDSSTQSLKATVLDSNLNIVASEQLQ 40 (289)
Q Consensus 8 ~~~~~lgIDiGtt~iK~~l~d~~G~il~~~~~~ 40 (289)
.+.+++|||=||| +-.+++|.+|+++...+..
T Consensus 30 ~~~lIVGiDPG~t-tgiAildL~G~~l~l~S~R 61 (138)
T PF04312_consen 30 RRYLIVGIDPGTT-TGIAILDLDGELLDLKSSR 61 (138)
T ss_pred CCCEEEEECCCce-eEEEEEecCCcEEEEEeec
Confidence 3557889999985 5677789999999876654
No 109
>PRK13411 molecular chaperone DnaK; Provisional
Probab=69.61 E-value=4.1 Score=41.44 Aligned_cols=21 Identities=24% Similarity=0.279 Sum_probs=18.1
Q ss_pred eEEEEEcCCCceEEEEEcCCCC
Q 022949 11 LFLGFDSSTQSLKATVLDSNLN 32 (289)
Q Consensus 11 ~~lgIDiGtt~iK~~l~d~~G~ 32 (289)
.++|||+|||++++++++. |+
T Consensus 3 ~viGIDlGTt~s~va~~~~-g~ 23 (653)
T PRK13411 3 KVIGIDLGTTNSCVAVLEG-GK 23 (653)
T ss_pred cEEEEEeCcccEEEEEEEC-CE
Confidence 5899999999999999864 44
No 110
>PRK07058 acetate kinase; Provisional
Probab=69.31 E-value=7.7 Score=36.85 Aligned_cols=33 Identities=12% Similarity=0.328 Sum_probs=25.9
Q ss_pred CCCceEEEEEcCCCceEEEEEcCCC---CEEEEEEe
Q 022949 7 PKDSLFLGFDSSTQSLKATVLDSNL---NIVASEQL 39 (289)
Q Consensus 7 ~~~~~~lgIDiGtt~iK~~l~d~~G---~il~~~~~ 39 (289)
++++++|.|..|+||+|..|||.+. +++.....
T Consensus 1 ~~~~~iLviNaGSSSlKf~l~~~~~~~~~~l~~G~~ 36 (396)
T PRK07058 1 MSKPLLLTFNAGSSTVKIGLFEVDGNEARRIGKGDI 36 (396)
T ss_pred CCCCEEEEEECChHhheeEEEecCCCCceEEEEEEE
Confidence 3688999999999999999999643 45555543
No 111
>PRK13331 pantothenate kinase; Reviewed
Probab=68.20 E-value=8.6 Score=34.26 Aligned_cols=26 Identities=12% Similarity=0.130 Sum_probs=20.9
Q ss_pred CceEEEEEcCCCceEEEEEcCCCCEEE
Q 022949 9 DSLFLGFDSSTQSLKATVLDSNLNIVA 35 (289)
Q Consensus 9 ~~~~lgIDiGtt~iK~~l~d~~G~il~ 35 (289)
...+|.||+|-|++|.++|+. .+++.
T Consensus 6 ~~~~L~iDiGNT~~~~g~f~~-~~~~~ 31 (251)
T PRK13331 6 SNEWLALMIGNSRLHWGYFSG-ETLVK 31 (251)
T ss_pred CCcEEEEEeCCCcEEEEEEEC-CEEEE
Confidence 456899999999999999994 34543
No 112
>PRK13322 pantothenate kinase; Reviewed
Probab=67.39 E-value=5.3 Score=35.44 Aligned_cols=23 Identities=30% Similarity=0.449 Sum_probs=19.4
Q ss_pred EEEEEcCCCceEEEEEcCCCCEE
Q 022949 12 FLGFDSSTQSLKATVLDSNLNIV 34 (289)
Q Consensus 12 ~lgIDiGtt~iK~~l~d~~G~il 34 (289)
+|.||+|-|++|.++++.+++++
T Consensus 2 ~L~IDiGNT~iK~~l~~~~~~~~ 24 (246)
T PRK13322 2 ILELDCGNSRLKWRVIDNGGQII 24 (246)
T ss_pred EEEEEeCCCcEEEEEEcCCCchh
Confidence 68899999999999999645543
No 113
>TIGR01865 cas_Csn1 CRISPR-associated protein, Csn1 family. CRISPR loci appear to be mobile elements with a wide host range. This model represents a protein found only in CRISPR-containing species, near other CRISPR-associated proteins (cas), as part of the NMENI subtype of CRISPR/Cas locus. The species range so far for this protein is animal pathogens and commensals only.
Probab=67.38 E-value=4.4 Score=42.23 Aligned_cols=23 Identities=17% Similarity=0.397 Sum_probs=20.4
Q ss_pred ceEEEEEcCCCceEEEEEcCCCC
Q 022949 10 SLFLGFDSSTQSLKATVLDSNLN 32 (289)
Q Consensus 10 ~~~lgIDiGtt~iK~~l~d~~G~ 32 (289)
+|+||+||||+||=-+|+|.+.+
T Consensus 1 ~y~LGLDiGt~SvGWAVv~~d~~ 23 (805)
T TIGR01865 1 EYILGLDIGIASVGWAIVEDDYK 23 (805)
T ss_pred CceeEEeecccceeEEEEecccc
Confidence 47899999999999999997654
No 114
>TIGR00329 gcp_kae1 metallohydrolase, glycoprotease/Kae1 family. This subfamily includes the well-studied secreted O-sialoglycoprotein endopeptidase (glycoprotease, EC 3.4.24.57) of Pasteurella haemolytica, a pathogen. A member from Riemerella anatipestifer, associated with cohemolysin activity, likewise is exported without benefit of a classical signal peptide and shows glycoprotease activity on the test substrate glycophorin. However, archaeal members of this subfamily show unrelated activities as demonstrated in Pyrococcus abyssi: DNA binding, iron binding, apurinic endonuclease activity, genomic association with a kinase domain, and no glycoprotease activity. This family thus pulls together a set of proteins as a homology group that appears to be near-universal in life, yet heterogeneous in assayed function between bacteria and archaea.
Probab=66.67 E-value=9.5 Score=34.86 Aligned_cols=75 Identities=17% Similarity=0.248 Sum_probs=41.9
Q ss_pred EEEEcCCCceEEEEEcCCCCEEEEEEeecccCCCccCCCCceeeCCCCCCCcCCChhHHHHHHHHHHHHHHh-c-CCCCC
Q 022949 13 LGFDSSTQSLKATVLDSNLNIVASEQLQFDSELPHYKTKDGVYRDPSNNGRIVSPTLMWIEALDLMLQKLSK-S-LDLSK 90 (289)
Q Consensus 13 lgIDiGtt~iK~~l~d~~G~il~~~~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~~~~~~~~~~~~~~l~~-~-~~~~~ 90 (289)
||||--+..+-++|+|.+++++..........+... |.+.+... .+++.+. +...++++.+ . .+..+
T Consensus 1 LaidTs~~~~sval~~~~~~il~~~~~~~~~~~~~~---gGi~p~~~----~~~H~~~----l~~~i~~~l~~~~~~~~d 69 (305)
T TIGR00329 1 LGIETSCDDTGVAIVDEEGNVLANIKISQIPLHAKY---GGVVPEEA----SRHHAEN----IPPLLERALIESNVDKSE 69 (305)
T ss_pred CEEecCccceEEEEEECCCcEEEEEEeccccccccc---CCcCcchh----HHHHHHH----HHHHHHHHHHHcCCCHHH
Confidence 589999999999999866888887665443211111 22222111 1112223 3334444332 2 56678
Q ss_pred EeEEEecc
Q 022949 91 VTAVSGSG 98 (289)
Q Consensus 91 I~aIgis~ 98 (289)
|.+|+++.
T Consensus 70 id~iav~~ 77 (305)
T TIGR00329 70 IDLIAYTQ 77 (305)
T ss_pred CCEEEEec
Confidence 89999976
No 115
>PRK09604 UGMP family protein; Validated
Probab=66.61 E-value=20 Score=33.19 Aligned_cols=28 Identities=21% Similarity=0.421 Sum_probs=23.1
Q ss_pred eEEEEEcCCCceEEEEEcCCCCEEEEEE
Q 022949 11 LFLGFDSSTQSLKATVLDSNLNIVASEQ 38 (289)
Q Consensus 11 ~~lgIDiGtt~iK~~l~d~~G~il~~~~ 38 (289)
++||||--+..+-++|+|.+++++....
T Consensus 2 ~iLgIdTS~~~~sval~~~~~~il~~~~ 29 (332)
T PRK09604 2 LILGIETSCDETSVAVVDDGRGLLSNVV 29 (332)
T ss_pred eEEEEEccccceEEEEEECCCcEEEEEE
Confidence 5899999887889999987778887654
No 116
>PTZ00340 O-sialoglycoprotein endopeptidase-like protein; Provisional
Probab=65.95 E-value=23 Score=33.17 Aligned_cols=79 Identities=15% Similarity=0.221 Sum_probs=45.7
Q ss_pred eEEEEEcCCCceEEEEEcCCCCEEEEEEeecccCCCccCCCCceeeCCCCCCCcCCChhHHHHHHHHHHHHHHh-c-CCC
Q 022949 11 LFLGFDSSTQSLKATVLDSNLNIVASEQLQFDSELPHYKTKDGVYRDPSNNGRIVSPTLMWIEALDLMLQKLSK-S-LDL 88 (289)
Q Consensus 11 ~~lgIDiGtt~iK~~l~d~~G~il~~~~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~~~~~~~~~~~~~~l~~-~-~~~ 88 (289)
.+||||--+.-+-++|+|.+|+++......... ..| +.+ -|++ ..+++. +.+..+++++.+ . ...
T Consensus 2 ~iLgIETScd~tsvAl~~~~~~il~~~~~sq~~---~~G--~Gv--vP~~--a~r~H~----~~l~~~i~~~l~~a~~~~ 68 (345)
T PTZ00340 2 LALGIEGSANKLGVGIVTSDGEILSNVRETYIT---PPG--TGF--LPRE--TAQHHR----EHILSLVKEALEEAKITP 68 (345)
T ss_pred eEEEEEccchhhEEEEEECCCcEEEEEEeeccc---cCC--CCc--CchH--HHHHHH----HHHHHHHHHHHHHcCCCH
Confidence 589999999999999999888888765443321 111 011 1210 011222 233344444332 2 556
Q ss_pred CCEeEEEeccCceee
Q 022949 89 SKVTAVSGSGQQHGS 103 (289)
Q Consensus 89 ~~I~aIgis~~~~~~ 103 (289)
.+|.+|+++. ++++
T Consensus 69 ~did~Iavt~-GPGl 82 (345)
T PTZ00340 69 SDISLICYTK-GPGM 82 (345)
T ss_pred HHCCEEEEec-CCCc
Confidence 7899999976 5665
No 117
>TIGR00904 mreB cell shape determining protein, MreB/Mrl family. A close homolog is found in the Archaeon Methanobacterium thermoautotrophicum, and a more distant homolog in Archaeoglobus fulgidus. The family is related to cell division protein FtsA and heat shock protein DnaK.
Probab=65.69 E-value=5.2 Score=36.82 Aligned_cols=21 Identities=19% Similarity=0.178 Sum_probs=15.7
Q ss_pred EEEEcCCCceEEEEEcCCCCEE
Q 022949 13 LGFDSSTQSLKATVLDSNLNIV 34 (289)
Q Consensus 13 lgIDiGtt~iK~~l~d~~G~il 34 (289)
+|||+||+++++... .+|.++
T Consensus 5 ~giDlGt~~s~i~~~-~~~~~~ 25 (333)
T TIGR00904 5 IGIDLGTANTLVYVK-GRGIVL 25 (333)
T ss_pred eEEecCcceEEEEEC-CCCEEE
Confidence 899999999997763 344433
No 118
>KOG1369 consensus Hexokinase [Carbohydrate transport and metabolism]
Probab=64.59 E-value=18 Score=35.19 Aligned_cols=60 Identities=10% Similarity=0.149 Sum_probs=37.8
Q ss_pred CCceEEEEEcCCCceEEEEEcCCCC--EEEEEEeecccCCCccCCCCceeeCCCCCCCcCCChhHHHHHHHHHHHHHH
Q 022949 8 KDSLFLGFDSSTQSLKATVLDSNLN--IVASEQLQFDSELPHYKTKDGVYRDPSNNGRIVSPTLMWIEALDLMLQKLS 83 (289)
Q Consensus 8 ~~~~~lgIDiGtt~iK~~l~d~~G~--il~~~~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~~~~~~~~~~~~~~l~ 83 (289)
++.-+++||+|+||.|+.++...|. .+......|.. |. +..+... +++++.+..++....
T Consensus 84 E~G~~lalDLGGTn~Rv~~v~L~g~~~~~~~~~~~~~i--p~-----~~m~gt~---------~~Lfd~Ia~~l~~F~ 145 (474)
T KOG1369|consen 84 EKGKFLALDLGGTNFRVLLVKLGGGRTSVRMYNKIYAI--PE-----EIMQGTG---------EELFDFIARCLADFL 145 (474)
T ss_pred cCCCEEEEecCCCceEEEEEEecCCcccceeeeeeEec--CH-----HHHcCch---------HHHHHHHHHHHHHHH
Confidence 3557999999999999999997665 23333223321 22 1222222 288888888887643
No 119
>PLN03184 chloroplast Hsp70; Provisional
Probab=64.19 E-value=6.3 Score=40.22 Aligned_cols=19 Identities=16% Similarity=0.317 Sum_probs=17.1
Q ss_pred eEEEEEcCCCceEEEEEcC
Q 022949 11 LFLGFDSSTQSLKATVLDS 29 (289)
Q Consensus 11 ~~lgIDiGtt~iK~~l~d~ 29 (289)
.++|||+|||++++++++.
T Consensus 40 ~viGIDlGTt~s~va~~~~ 58 (673)
T PLN03184 40 KVVGIDLGTTNSAVAAMEG 58 (673)
T ss_pred CEEEEEeCcCcEEEEEEEC
Confidence 4899999999999999964
No 120
>PF14639 YqgF: Holliday-junction resolvase-like of SPT6 ; PDB: 3PSI_A 3PSF_A.
Probab=63.94 E-value=31 Score=28.16 Aligned_cols=30 Identities=20% Similarity=0.254 Sum_probs=20.2
Q ss_pred ceEEEEEcCCC----ceEEEEEcCCCCEEEEEEe
Q 022949 10 SLFLGFDSSTQ----SLKATVLDSNLNIVASEQL 39 (289)
Q Consensus 10 ~~~lgIDiGtt----~iK~~l~d~~G~il~~~~~ 39 (289)
.-++++-.|.. .+.++++|++|+++.....
T Consensus 5 ~rVla~~~g~g~~~~~~~~v~ld~~G~v~d~~~~ 38 (150)
T PF14639_consen 5 PRVLALSWGSGDGDDAVFCVVLDENGEVLDHLKL 38 (150)
T ss_dssp --EEEEE-TT--TTS-EEEEEE-TTS-EEEEEEE
T ss_pred CEEEEEEcCCCCCCCCEEEEEECCCCcEEEEEEE
Confidence 45788888854 5899999999999998877
No 121
>PRK01433 hscA chaperone protein HscA; Provisional
Probab=63.34 E-value=7.5 Score=39.10 Aligned_cols=19 Identities=16% Similarity=0.235 Sum_probs=16.9
Q ss_pred ceEEEEEcCCCceEEEEEc
Q 022949 10 SLFLGFDSSTQSLKATVLD 28 (289)
Q Consensus 10 ~~~lgIDiGtt~iK~~l~d 28 (289)
..++|||+|||+..++++.
T Consensus 19 ~~viGIDlGTT~S~va~~~ 37 (595)
T PRK01433 19 QIAVGIDFGTTNSLIAIAT 37 (595)
T ss_pred ceEEEEEcCcccEEEEEEe
Confidence 3689999999999999885
No 122
>TIGR01319 glmL_fam conserved hypothetical protein. This small family includes, so far, an uncharacterized protein from E. coli O157:H7 and GlmL from Clostridium tetanomorphum and Clostridium cochlearium. GlmL is located between the genes for the two subunits, epsilon (GlmE) and sigma (GlmS), of the coenzyme-B12-dependent glutamate mutase (methylaspartate mutase), the first enzyme in a pathway of glutamate fermentation. Members shows significant sequence similarity to the hydantoinase branch of the hydantoinase/oxoprolinase family (pfam01968).
Probab=63.21 E-value=19 Score=34.87 Aligned_cols=29 Identities=21% Similarity=0.103 Sum_probs=24.0
Q ss_pred EEcCCCceEEEEEcC-CCCEEEEEEeeccc
Q 022949 15 FDSSTQSLKATVLDS-NLNIVASEQLQFDS 43 (289)
Q Consensus 15 IDiGtt~iK~~l~d~-~G~il~~~~~~~~~ 43 (289)
+|+|+|-+|+.+||. +++++...+..+|+
T Consensus 1 ~DiGST~Tk~~a~~~~~~~~~~~~~~~tpT 30 (463)
T TIGR01319 1 LDFGSTWTKAAAFDIEGDAILATAHDITPI 30 (463)
T ss_pred CCccccceEEEEEecCCCcEEEEEeccCcc
Confidence 699999999999995 57788888777654
No 123
>COG2441 Predicted butyrate kinase [Energy production and conversion]
Probab=62.58 E-value=12 Score=33.84 Aligned_cols=49 Identities=18% Similarity=0.370 Sum_probs=36.1
Q ss_pred EEEEcCCCceEEEEEc-CCCCEEEEEEeecccCCCccCCCCceeeCCCCCCCcCCChhHHHHHHHHHHHH
Q 022949 13 LGFDSSTQSLKATVLD-SNLNIVASEQLQFDSELPHYKTKDGVYRDPSNNGRIVSPTLMWIEALDLMLQK 81 (289)
Q Consensus 13 lgIDiGtt~iK~~l~d-~~G~il~~~~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~~~~~~~~~~~~~~ 81 (289)
+|||-||.+.-+.-|| +.|+++.....+.+ -++.+|. .+.+.+++.-.+
T Consensus 1 ~GIDpGT~smdvfgfdDEsg~vi~~~~I~rd----------eVtk~p~----------iiv~ii~e~~~e 50 (374)
T COG2441 1 IGIDPGTGSMDVFGFDDESGNVIVDVAIPRD----------EVTKSPR----------IIVDIIEEVQAE 50 (374)
T ss_pred CCcCCCCCceeEEEEecCCCCEEEEEecCHH----------HhccCch----------HHHHHHHHHhhh
Confidence 5899999999888887 47999988877654 3677777 666665555433
No 124
>COG0837 Glk Glucokinase [Carbohydrate transport and metabolism]
Probab=61.83 E-value=59 Score=29.85 Aligned_cols=20 Identities=10% Similarity=0.263 Sum_probs=15.8
Q ss_pred ceEEEEEcCCCceEEEEEcCC
Q 022949 10 SLFLGFDSSTQSLKATVLDSN 30 (289)
Q Consensus 10 ~~~lgIDiGtt~iK~~l~d~~ 30 (289)
..++| |||+||.|.+|+...
T Consensus 7 p~Lvg-DIGGTnaRfaLv~~a 26 (320)
T COG0837 7 PRLVG-DIGGTNARFALVEIA 26 (320)
T ss_pred ceEEE-ecCCcceEEEEeccC
Confidence 34455 999999999998753
No 125
>TIGR01991 HscA Fe-S protein assembly chaperone HscA. The Heat Shock Cognate proteins HscA and HscB act together as chaperones. HscA resembles DnaK but belongs in a separate clade. The apparent function is to aid assembly of iron-sulfur cluster proteins. Homologs from Buchnera and Wolbachia are clearly in the same clade but are highly derived and score lower than some examples of DnaK.
Probab=61.30 E-value=5.9 Score=39.81 Aligned_cols=18 Identities=22% Similarity=0.237 Sum_probs=16.2
Q ss_pred EEEEEcCCCceEEEEEcC
Q 022949 12 FLGFDSSTQSLKATVLDS 29 (289)
Q Consensus 12 ~lgIDiGtt~iK~~l~d~ 29 (289)
++|||+|||++++++++.
T Consensus 1 ~iGIDlGTtns~va~~~~ 18 (599)
T TIGR01991 1 AVGIDLGTTNSLVASVRS 18 (599)
T ss_pred CEEEEEccccEEEEEEEC
Confidence 489999999999999974
No 126
>PRK13928 rod shape-determining protein Mbl; Provisional
Probab=59.65 E-value=6.5 Score=36.28 Aligned_cols=15 Identities=27% Similarity=0.352 Sum_probs=13.4
Q ss_pred EEEEcCCCceEEEEE
Q 022949 13 LGFDSSTQSLKATVL 27 (289)
Q Consensus 13 lgIDiGtt~iK~~l~ 27 (289)
+|||+||+++++...
T Consensus 6 ~gIDlGt~~~~i~~~ 20 (336)
T PRK13928 6 IGIDLGTANVLVYVK 20 (336)
T ss_pred eEEEcccccEEEEEC
Confidence 799999999999764
No 127
>PF03309 Pan_kinase: Type III pantothenate kinase; InterPro: IPR004619 Pantothenate kinase (PanK or CoaA) catalyses the first step of the universal five step coenzyme A (CoA) biosynthesis pathway. CoA is a ubiquitous and essential cofactor in all living organsims. Pantothenate kinase catalyses the first and rate limiting step in the CoA biosynthetic pathway, which involves transferring a phosphoryl group from ATP to pantothenate, also known as vitamin B5. Three distinct types of pantothenate kinase enzymes have been identified: type I PanK enzymes are typified by the E. coli CoaA protein, type II enzymes are primarily found in eukaryotic organisms whilst type III enzymes have a wider phylogenic distribution and are not feedback inhibited by CoA []. This entry represents the type III pantothenate kinase family, such as that found in Helicobacter pylori. PanK III enzymes have a much wider phylogenic distribution than PanK I, and differs significantly in biochemical activity. PanK III enzymes are are not feedback inhibited by CoA concentration (which is also the case for PanK II enzymes), and PanK III enzymes have an unusually high Km for ATP []. ; GO: 0045893 positive regulation of transcription, DNA-dependent; PDB: 2GTD_E 3BF1_F 3BEX_D 3BF3_F 2NRH_B 2H3G_X 3DJC_J 2F9T_A 2F9W_A.
Probab=59.29 E-value=8.8 Score=32.86 Aligned_cols=20 Identities=20% Similarity=0.288 Sum_probs=16.9
Q ss_pred EEEEEcCCCceEEEEEcCCC
Q 022949 12 FLGFDSSTQSLKATVLDSNL 31 (289)
Q Consensus 12 ~lgIDiGtt~iK~~l~d~~G 31 (289)
+|.||+|-|++|.++++.+.
T Consensus 1 ~L~iDiGNT~ik~~~~~~~~ 20 (206)
T PF03309_consen 1 ILLIDIGNTRIKWALFDGDK 20 (206)
T ss_dssp EEEEEE-SSEEEEEEEETTE
T ss_pred CEEEEECCCeEEEEEEECCE
Confidence 57899999999999998774
No 128
>PRK13328 pantothenate kinase; Reviewed
Probab=58.72 E-value=11 Score=33.58 Aligned_cols=24 Identities=21% Similarity=0.160 Sum_probs=20.3
Q ss_pred EEEEEcCCCceEEEEEcCCCCEEE
Q 022949 12 FLGFDSSTQSLKATVLDSNLNIVA 35 (289)
Q Consensus 12 ~lgIDiGtt~iK~~l~d~~G~il~ 35 (289)
+|-||+|.|.+|-++++.+++++.
T Consensus 3 ~LliDiGNTriKwa~~~~~~~~~~ 26 (255)
T PRK13328 3 ILLIDAGNSRIKWAWADAGRPWVH 26 (255)
T ss_pred EEEEEeCccceeEEEEcCCCceee
Confidence 788999999999999997655554
No 129
>PRK13930 rod shape-determining protein MreB; Provisional
Probab=57.03 E-value=8.9 Score=35.13 Aligned_cols=15 Identities=27% Similarity=0.284 Sum_probs=13.7
Q ss_pred EEEEcCCCceEEEEE
Q 022949 13 LGFDSSTQSLKATVL 27 (289)
Q Consensus 13 lgIDiGtt~iK~~l~ 27 (289)
+|||+||+++|+...
T Consensus 11 vgiDlGt~~t~i~~~ 25 (335)
T PRK13930 11 IGIDLGTANTLVYVK 25 (335)
T ss_pred eEEEcCCCcEEEEEC
Confidence 899999999999875
No 130
>PRK00109 Holliday junction resolvase-like protein; Reviewed
Probab=56.43 E-value=17 Score=29.14 Aligned_cols=24 Identities=25% Similarity=0.292 Sum_probs=21.0
Q ss_pred ceEEEEEcCCCceEEEEEcCCCCE
Q 022949 10 SLFLGFDSSTQSLKATVLDSNLNI 33 (289)
Q Consensus 10 ~~~lgIDiGtt~iK~~l~d~~G~i 33 (289)
..+||||.|+..|=.++.|..+.+
T Consensus 4 ~~iLalD~G~kriGvAv~d~~~~~ 27 (138)
T PRK00109 4 GRILGLDVGTKRIGVAVSDPLGGT 27 (138)
T ss_pred CcEEEEEeCCCEEEEEEecCCCCE
Confidence 349999999999999999987765
No 131
>COG2183 Tex Transcriptional accessory protein [Transcription]
Probab=56.05 E-value=37 Score=35.06 Aligned_cols=31 Identities=19% Similarity=0.347 Sum_probs=25.5
Q ss_pred CceEEEEEcCCC-ceEEEEEcCCCCEEEEEEe
Q 022949 9 DSLFLGFDSSTQ-SLKATVLDSNLNIVASEQL 39 (289)
Q Consensus 9 ~~~~lgIDiGtt-~iK~~l~d~~G~il~~~~~ 39 (289)
.+.++|+|-|.- ++|.+++|..|+.+....+
T Consensus 329 ~~~~lglDPg~rtG~k~Avvd~tGk~l~~~~I 360 (780)
T COG2183 329 PKATLGLDPGFRTGCKVAVVDDTGKLLDTATI 360 (780)
T ss_pred CcceeecCCccccccEEEEEcCCCceeceeEE
Confidence 347899999964 5999999999999886654
No 132
>TIGR03723 bact_gcp putative glycoprotease GCP. This model represents bacterial members of a protein family that is widely distributed. In a few pathogenic species, the protein is exported in a way that may represent an exceptional secondary function. This model plus companion (archaeal) model TIGR03722 together span the prokaryotic member sequences of TIGR00329, a protein family that appears universal in life, and whose broad function is unknown. A member of TIGR03722 has been characterized as a DNA-binding protein with apurinic endopeptidase activity. In contrast, the rare characterized members of the present family show O-sialoglycoprotein endopeptidase (EC. 3.4.24.57) activity after export. These include glycoprotease (gcp) from Pasteurella haemolytica A1 and a cohemolysin from Riemerella anatipestifer (GB|AAG39646.1). The member from Staphylococcus aureus is essential and is related to cell wall dynamics and the modulation of autolysis, but members are also found in the Mycoplasmas
Probab=54.86 E-value=24 Score=32.43 Aligned_cols=28 Identities=14% Similarity=0.342 Sum_probs=22.2
Q ss_pred EEEEEcCCCceEEEEEcCCCCEEEEEEe
Q 022949 12 FLGFDSSTQSLKATVLDSNLNIVASEQL 39 (289)
Q Consensus 12 ~lgIDiGtt~iK~~l~d~~G~il~~~~~ 39 (289)
+|+||--+..+-++|+|.+++++.....
T Consensus 1 iLaIdTs~~~~sval~~~~~~il~~~~~ 28 (314)
T TIGR03723 1 ILGIETSCDETAVAIVDDGKGLLSNIVA 28 (314)
T ss_pred CEEEECcccceEEEEEECCceEEEEEEe
Confidence 4899999999999999865557766554
No 133
>TIGR03725 bact_YeaZ universal bacterial protein YeaZ. This family describes a protein family, YeaZ, that appears to be universal in bacteria, but whose function is unknown. This family is related to the gcp (glycoprotease) protein family, also universal in bacteria and unknown in function. In Gram-positive lineages, members of these two related families often belong to the same operon, along with the ribosomal-protein-alanine acetyltransferase gene. Members of this family may occur as fusions with gcp or the ribosomal protein N-acetyltransferase rimI, and is frequently encoded next to rimI.
Probab=51.41 E-value=41 Score=28.65 Aligned_cols=26 Identities=35% Similarity=0.555 Sum_probs=20.4
Q ss_pred EEEEEcCCCceEEEEEcCCCCEEEEEE
Q 022949 12 FLGFDSSTQSLKATVLDSNLNIVASEQ 38 (289)
Q Consensus 12 ~lgIDiGtt~iK~~l~d~~G~il~~~~ 38 (289)
+|+||--|..+-+++++ +++++....
T Consensus 1 iLaidTs~~~~sval~~-~~~~~~~~~ 26 (202)
T TIGR03725 1 ILAIDTSTEALSVALLD-DGEILAERS 26 (202)
T ss_pred CEEEECCCcceEEEEEE-CCEEEEEEe
Confidence 47899999999999998 667766543
No 134
>PRK12397 propionate kinase; Reviewed
Probab=50.75 E-value=25 Score=33.62 Aligned_cols=28 Identities=14% Similarity=0.344 Sum_probs=22.6
Q ss_pred EEEEEcCCCceEEEEEcC-CCCEEEEEEe
Q 022949 12 FLGFDSSTQSLKATVLDS-NLNIVASEQL 39 (289)
Q Consensus 12 ~lgIDiGtt~iK~~l~d~-~G~il~~~~~ 39 (289)
+|.|..|+||+|..|||. +.+++.....
T Consensus 5 iLvlN~GSSSlKf~lf~~~~~~~l~~G~v 33 (404)
T PRK12397 5 IMAINAGSSSLKFQLLEMPQGDMLCQGLI 33 (404)
T ss_pred EEEEECChHhheEEEEECCCCceEEEEEE
Confidence 899999999999999995 4466665544
No 135
>PF04848 Pox_A22: Poxvirus A22 protein; InterPro: IPR006932 This family, representing the Poxvirus A22 protein, is a Holliday junction resolvase, it specifically cleaves and resolves four-way DNA Holliday junctions into linear duplex products. ; GO: 0000287 magnesium ion binding, 0000400 four-way junction DNA binding, 0016788 hydrolase activity, acting on ester bonds, 0006281 DNA repair, 0006310 DNA recombination
Probab=50.75 E-value=35 Score=27.74 Aligned_cols=25 Identities=16% Similarity=0.291 Sum_probs=21.4
Q ss_pred eEEEEEcCCCceEEEEEcCCCCEEE
Q 022949 11 LFLGFDSSTQSLKATVLDSNLNIVA 35 (289)
Q Consensus 11 ~~lgIDiGtt~iK~~l~d~~G~il~ 35 (289)
.+++||+|+-|.--++++.+++.+.
T Consensus 2 ii~sIDiGikNlA~~iie~~~~~i~ 26 (143)
T PF04848_consen 2 IILSIDIGIKNLAYCIIEFEGNKIR 26 (143)
T ss_pred eEEEEecCCCceeEEEEEcCCCeEE
Confidence 5899999999999999998776543
No 136
>PF03652 UPF0081: Uncharacterised protein family (UPF0081); InterPro: IPR005227 Holliday junction resolvases (HJRs) are key enzymes of DNA recombination. The principal HJRs are now known or confidently predicted for all bacteria and archaea whose genomes have been completely sequenced, with many species encoding multiple potential HJRs. Structural and evolutionary relationships of HJRs and related nucleases suggests that the HJR function has evolved independently from at least four distinct structural folds, namely RNase H, endonuclease, endonuclease VII-colicin E and RusA (IPR008822 from INTERPRO): The endonuclease fold, whose structural prototypes are the phage exonuclease, the very short patch repair nuclease (Vsr) and type II restriction enzymes, is shown to encompass by far a greater diversity of nucleases than previously suspected. This fold unifies archaeal HJRs (IPR002732 from INTERPRO), repair nucleases such as RecB (IPR004586 from INTERPRO) and Vsr (IPR004603 from INTERPRO), restriction enzymes and a variety of predicted nucleases whose specific activities remain to be determined. The RNase H fold characterises the RuvC family (IPR002176 from INTERPRO), which is nearly ubiquitous in bacteria, and in addition the YqgF family (IPR005227 from INTERPRO). The proteins of this family, typified by Escherichia coli YqgF, are likely to function as an alternative to RuvC in most bacteria, but could be the principal HJRs in low-GC Gram-positive bacteria and Aquifex. Endonuclease VII of phage T4 (IPR004211 from INTERPRO) is shown to serve as a structural template for many nucleases, including McrA and other type II restriction enzymes. Together with colicin E7, endonuclease VII defines a distinct metal-dependent nuclease fold. Horizontal gene transfer, lineage-specific gene loss and gene family expansion, and non-orthologous gene displacement seem to have been major forces in the evolution of HJRs and related nucleases. A remarkable case of displacement is seen in the Lyme disease spirochete Borrelia burgdorferi, which does not possess any of the typical HJRs, but instead encodes, in its chromosome and each of the linear plasmids, members of the exonuclease family predicted to function as HJRs. The diversity of HJRs and related nucleases in bacteria and archaea contrasts with their near absence in eukaryotes. The few detected eukaryotic representatives of the endonuclease fold and the RNase H fold have probably been acquired from bacteria via horizontal gene transfer. The identity of the principal HJR(s) involved in recombination in eukaryotes remains uncertain; this function could be performed by topoisomerase IB or by a novel, so far undetected, class of enzymes. Likely HJRs and related nucleases were identified in the genomes of numerous bacterial and eukaryotic DNA viruses. Gene flow between viral and cellular genomes has probably played a major role in the evolution of this class of enzymes. This family represents the YqgF family of putative Holliday junction resolvases. With the exception of the spirochetes, the YqgF family is represented in all bacterial lineages, including the mycoplasmas with their highly degenerate genomes. The RuvC resolvases are conspicuously absent in the low-GC Gram-positive bacterial lineage, with the exception of Ureaplasma parvum (Ureaplasma urealyticum biotype 1) (Q9PQY7 from SWISSPROT, []). Furthermore, loss of function ruvC mutants of E. coli show a residual HJR activity that cannot be ascribed to the prophage-encoded RusA resolvase []. This suggests that the YqgF family proteins could be alternative HJRs whose function partially overlaps with that of RuvC [].; GO: 0016788 hydrolase activity, acting on ester bonds, 0006281 DNA repair, 0006310 DNA recombination, 0006974 response to DNA damage stimulus, 0005737 cytoplasm; PDB: 1NU0_A 1OVQ_A 1NMN_B 1VHX_B 1IV0_A.
Probab=50.49 E-value=17 Score=29.02 Aligned_cols=23 Identities=30% Similarity=0.293 Sum_probs=20.6
Q ss_pred eEEEEEcCCCceEEEEEcCCCCE
Q 022949 11 LFLGFDSSTQSLKATVLDSNLNI 33 (289)
Q Consensus 11 ~~lgIDiGtt~iK~~l~d~~G~i 33 (289)
.+||||+|+..|=.++.|..+.+
T Consensus 2 riL~lD~G~kriGiAvsd~~~~~ 24 (135)
T PF03652_consen 2 RILGLDYGTKRIGIAVSDPLGII 24 (135)
T ss_dssp EEEEEEECSSEEEEEEEETTTSS
T ss_pred eEEEEEeCCCeEEEEEecCCCCe
Confidence 58999999999999999988764
No 137
>PRK13929 rod-share determining protein MreBH; Provisional
Probab=50.40 E-value=13 Score=34.40 Aligned_cols=13 Identities=23% Similarity=0.348 Sum_probs=11.4
Q ss_pred EEEEEcCCCceEE
Q 022949 12 FLGFDSSTQSLKA 24 (289)
Q Consensus 12 ~lgIDiGtt~iK~ 24 (289)
.+|||+||+++++
T Consensus 6 ~~giDlGt~~~~i 18 (335)
T PRK13929 6 EIGIDLGTANILV 18 (335)
T ss_pred eEEEEcccccEEE
Confidence 4899999999984
No 138
>PRK12379 propionate/acetate kinase; Provisional
Probab=49.84 E-value=27 Score=33.30 Aligned_cols=31 Identities=23% Similarity=0.295 Sum_probs=24.4
Q ss_pred CceEEEEEcCCCceEEEEEcCC-CCEEEEEEe
Q 022949 9 DSLFLGFDSSTQSLKATVLDSN-LNIVASEQL 39 (289)
Q Consensus 9 ~~~~lgIDiGtt~iK~~l~d~~-G~il~~~~~ 39 (289)
-+++|.|..|+||+|..|||.+ .+++.....
T Consensus 4 ~~~iLvlN~GSSSlK~~l~~~~~~~~l~~G~v 35 (396)
T PRK12379 4 FPVVLVINCGSSSIKFSVLDASDCEVLMSGIA 35 (396)
T ss_pred CCEEEEEECChHhheEEEEECCCCceEEEEEE
Confidence 3579999999999999999964 456655544
No 139
>PRK00039 ruvC Holliday junction resolvase; Reviewed
Probab=47.71 E-value=52 Score=27.25 Aligned_cols=22 Identities=18% Similarity=0.228 Sum_probs=20.0
Q ss_pred eEEEEEcCCCceEEEEEcCCCC
Q 022949 11 LFLGFDSSTQSLKATVLDSNLN 32 (289)
Q Consensus 11 ~~lgIDiGtt~iK~~l~d~~G~ 32 (289)
.+||||-|++++=.++++.+|+
T Consensus 3 ~iLGIDPgl~~tG~avi~~~~~ 24 (164)
T PRK00039 3 RILGIDPGLRRTGYGVIEVEGR 24 (164)
T ss_pred EEEEEccccCceeEEEEEecCC
Confidence 5899999999999999998776
No 140
>COG0816 Predicted endonuclease involved in recombination (possible Holliday junction resolvase in Mycoplasmas and B. subtilis) [DNA replication, recombination, and repair]
Probab=47.64 E-value=25 Score=28.51 Aligned_cols=22 Identities=23% Similarity=0.169 Sum_probs=20.0
Q ss_pred ceEEEEEcCCCceEEEEEcCCC
Q 022949 10 SLFLGFDSSTQSLKATVLDSNL 31 (289)
Q Consensus 10 ~~~lgIDiGtt~iK~~l~d~~G 31 (289)
+.+||+|+|+-.|=+++.|..+
T Consensus 2 ~~ilalD~G~KrIGvA~sd~~~ 23 (141)
T COG0816 2 MRILALDVGTKRIGVAVSDILG 23 (141)
T ss_pred ceEEEEecCCceEEEEEecCCC
Confidence 4689999999999999999877
No 141
>PRK09605 bifunctional UGMP family protein/serine/threonine protein kinase; Validated
Probab=47.24 E-value=50 Score=32.54 Aligned_cols=30 Identities=20% Similarity=0.358 Sum_probs=25.0
Q ss_pred eEEEEEcCCCceEEEEEcCCCCEEEEEEee
Q 022949 11 LFLGFDSSTQSLKATVLDSNLNIVASEQLQ 40 (289)
Q Consensus 11 ~~lgIDiGtt~iK~~l~d~~G~il~~~~~~ 40 (289)
++||||--+..+-++|++.+|++++.....
T Consensus 2 ~il~iets~~~~s~a~~~~~~~~~~~~~~~ 31 (535)
T PRK09605 2 IVLGIEGTAWKTSAGIVDSDGDVLFNESDP 31 (535)
T ss_pred EEEEEEccccceEEEEEeCCCcEEEEEEee
Confidence 689999999999999999777888766544
No 142
>TIGR03722 arch_KAE1 universal archaeal protein Kae1. This family represents the archaeal protein Kae1. Its partner Bud32 is fused with it in about half of the known archaeal genomes. The pair, which appears universal in the archaea, corresponds to EKC/KEOPS complex in eukaryotes. A recent characterization of the member from Pyrococcus abyssi, as an iron-binding, atypical DNA-binding protein with an apurinic lyase activity, challenges the common annotation of close homologs as O-sialoglycoprotein endopeptidase. The latter annotation is based on a characterized protein from the bacterium Pasteurella haemolytica.
Probab=47.01 E-value=30 Score=31.85 Aligned_cols=74 Identities=16% Similarity=0.252 Sum_probs=40.4
Q ss_pred EEEEcCCCceEEEEEcCCCCEEEEEEeecccCCCccCCCCceeeCCCCCCCcCCChhHHHHHHHHHHHHHHhcCCCCCEe
Q 022949 13 LGFDSSTQSLKATVLDSNLNIVASEQLQFDSELPHYKTKDGVYRDPSNNGRIVSPTLMWIEALDLMLQKLSKSLDLSKVT 92 (289)
Q Consensus 13 lgIDiGtt~iK~~l~d~~G~il~~~~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~I~ 92 (289)
||||--+..+-++|++.+++++......... .. |... |++ ..+++.+.+...+++++++.. ++..+|.
T Consensus 1 Lgiets~~~~s~al~~~~~~i~~~~~~~~~~---~~---gg~~--p~~--~~~~H~~~l~~~i~~~l~~~~--~~~~did 68 (322)
T TIGR03722 1 LGIEGTAHTFGVGIVDEDGEILANVSDTYVP---EK---GGIH--PRE--AAEHHAEVAPKLIKEALEEAG--VSLEDID 68 (322)
T ss_pred CEEeccccceEEEEEECCCeEEEEEEeeccc---Cc---CCcC--hhH--HHHHHHHHHHHHHHHHHHHcC--CCHHHCC
Confidence 5889888888999998778888765544321 11 1121 110 011122233333444444321 4567888
Q ss_pred EEEecc
Q 022949 93 AVSGSG 98 (289)
Q Consensus 93 aIgis~ 98 (289)
+|+++.
T Consensus 69 ~Iavt~ 74 (322)
T TIGR03722 69 AVAFSQ 74 (322)
T ss_pred EEEEec
Confidence 999885
No 143
>cd00529 RuvC_resolvase Holliday junction resolvases (HJRs) are endonucleases that specifically resolve Holliday junction DNA intermediates during homologous recombination. HJR's occur in archaea, bacteria, and in the mitochondria of certain fungi, however this CD includes only the bacterial and mitochondrial HJR's. These are referred to as the RuvC family of Holliday junction resolvases, RuvC being the E.coli HJR. RuvC and its orthologs are homodimers and are structurely similar to RNase H and Hsp70.
Probab=46.56 E-value=75 Score=25.79 Aligned_cols=21 Identities=19% Similarity=0.354 Sum_probs=18.3
Q ss_pred EEEEEcCCCceEEEEEcCCCC
Q 022949 12 FLGFDSSTQSLKATVLDSNLN 32 (289)
Q Consensus 12 ~lgIDiGtt~iK~~l~d~~G~ 32 (289)
+||||-|++++=.++++.+++
T Consensus 2 ILGIDPGl~~~G~av~~~~~~ 22 (154)
T cd00529 2 ILGIDPGSRNTGYGVIEQEGR 22 (154)
T ss_pred EEEEccCcCceEEEEEEeeCC
Confidence 799999999999999986543
No 144
>TIGR00016 ackA acetate kinase. Acetate kinase is involved in the activation of acetate to acetyl CoA and in the secretion of acetate. It catalyzes the reaction ATP + acetate = ADP + acetyl phosphate. Some members of this family have been shown to act on propionate as well as acetate. An example of a propionate/acetate kinase is TdcD of E. coli, an enzyme of an anaerobic pathway of threonine catabolism. It is not known how many members of this family act on additional substrates besides acetate.
Probab=45.40 E-value=35 Score=32.60 Aligned_cols=29 Identities=21% Similarity=0.241 Sum_probs=22.8
Q ss_pred eEEEEEcCCCceEEEEEcCC--CCEEEEEEe
Q 022949 11 LFLGFDSSTQSLKATVLDSN--LNIVASEQL 39 (289)
Q Consensus 11 ~~lgIDiGtt~iK~~l~d~~--G~il~~~~~ 39 (289)
.+|.|..|+||+|..|||.+ .+++.....
T Consensus 5 ~iLvlN~GSSSlKf~lf~~~~~~~~l~~G~~ 35 (404)
T TIGR00016 5 KILVINAGSSSLKFALFDYTNGETVLLSGLA 35 (404)
T ss_pred eEEEEECChHhheEEEEecCCCCceEEEEEE
Confidence 38999999999999999953 466655543
No 145
>PF02075 RuvC: Crossover junction endodeoxyribonuclease RuvC; InterPro: IPR002176 The Escherichia coli ruvC gene is involved in DNA repair and in the late step of RecE and RecF pathway recombination []. RuvC protein (3.1.22.4 from EC) cleaves cruciform junctions, which are formed by the extrusion of inverted repeat sequences from a super-coiled plasmid and which are structurally analogous to Holliday junctions, by introducing nicks into strands with the same polarity. The nicks leave a 5'terminal phosphate and a 3'terminal hydroxyl group which are ligated by E. coli or Bacteriophage T4 DNA ligases. Analysis of the cleavage sites suggests that DNA topology rather than a particular sequence determines the cleavage site. RuvC protein also cleaves Holliday junctions that are formed between gapped circular and linear duplex DNA by the function of RecA protein. The active form of RuvC protein is a dimer. This is mechanistically suited for an endonuclease involved in swapping DNA strands at the crossover junctions. It is inferred that RuvC protein is an endonuclease that resolves Holliday structures in vivo []. RucC is a small protein of about 20 kD. It requires and binds a magnesium ion. The structure of E. coli ruvC is a 3-layer alpha-beta sandwich containing a 5-stranded beta-sheet sandwiched between 5 alpha-helices [].; GO: 0004520 endodeoxyribonuclease activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1HJR_A.
Probab=45.22 E-value=49 Score=26.82 Aligned_cols=22 Identities=18% Similarity=0.291 Sum_probs=17.4
Q ss_pred EEEEEcCCCceEEEEEcCCCCE
Q 022949 12 FLGFDSSTQSLKATVLDSNLNI 33 (289)
Q Consensus 12 ~lgIDiGtt~iK~~l~d~~G~i 33 (289)
+||||-|++++--++++.+++-
T Consensus 1 ILGIDPgl~~tG~avi~~~~~~ 22 (149)
T PF02075_consen 1 ILGIDPGLSNTGYAVIEEDGGK 22 (149)
T ss_dssp EEEEE--SSEEEEEEEEEETTE
T ss_pred CEEECCCCCCeeEEEEEeeCCE
Confidence 6899999999999999987644
No 146
>KOG1386 consensus Nucleoside phosphatase [Nucleotide transport and metabolism]
Probab=44.83 E-value=50 Score=32.25 Aligned_cols=66 Identities=11% Similarity=-0.013 Sum_probs=43.1
Q ss_pred CCceEEEEEcCCCceEEEEEc---CCCC-EEEEEEeecccCCCccCCCCceeeCCCCCCCcCCChhHHHHHHHHHHHHHH
Q 022949 8 KDSLFLGFDSSTQSLKATVLD---SNLN-IVASEQLQFDSELPHYKTKDGVYRDPSNNGRIVSPTLMWIEALDLMLQKLS 83 (289)
Q Consensus 8 ~~~~~lgIDiGtt~iK~~l~d---~~G~-il~~~~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~~~~~~~~~~~~~~l~ 83 (289)
+-+|=|.||.|++++|.-|+. ++|+ ++......+......||- -....+|+ ..-..+..+++-+.
T Consensus 7 ~~kYgiviDaGSSgTrl~Vy~w~~~~g~~~~~i~~~~~~~~k~~PGi-Ssfa~nP~----------~a~~~l~pLlefA~ 75 (501)
T KOG1386|consen 7 NLKYGIVIDAGSSGTRLFVYKWPAESGNPLTGIVGQIYDCLKLGPGI-SSFADNPE----------GASVYLTPLLEFAK 75 (501)
T ss_pred cceEEEEEecCCCCceEEEEeecccCCCcccCccchhhcccccCCCh-hhhccChh----------hhHHHHHHHHHHHH
Confidence 457889999999999999998 4677 455555555444445542 11234565 66667777776554
Q ss_pred h
Q 022949 84 K 84 (289)
Q Consensus 84 ~ 84 (289)
+
T Consensus 76 ~ 76 (501)
T KOG1386|consen 76 E 76 (501)
T ss_pred h
Confidence 4
No 147
>PF06723 MreB_Mbl: MreB/Mbl protein; InterPro: IPR004753 Bacterial cell shape varies greatly between species, and characteristic morphologies are used for identification purposes. In addition to individual cell shape, the way in which groups of cells are arranged is also typical of some bacterial species, especially Gram-positive coccoids. For many years, it was believed that micro-organisms with other than spheroidal cell shapes maintained morphology by means of their external cell walls. Recently, however, studies of the Gram-positive rod Bacillus subtilis have revealed two related genes that are essential for the integrity of cell morphogenesis []. Termed mreB and mbl, the gene products localise close to the cell surface, forming filamentous helical structures. Many homologues have been found in diverse bacterial groups, suggesting a common ancestor []. The crystal structure of MreB from Thermotoga maritima has been resolved using X-ray crystallography []. It consists of 19 beta-strands and 15 alpha- helices, and shows remarkable structural similarity to eukaryotic actin. MreB crystals also contain proto-filaments, with individual proteins assembling into polymers like F-actin, in the same orientation. It is hypothesised therefore, that MreB was the forerunner of actin in early eukaryotes [].; GO: 0000902 cell morphogenesis; PDB: 1JCF_A 1JCE_A 2WUS_A 1JCG_A.
Probab=44.51 E-value=13 Score=34.37 Aligned_cols=14 Identities=21% Similarity=0.268 Sum_probs=11.2
Q ss_pred EEEEEcCCCceEEE
Q 022949 12 FLGFDSSTQSLKAT 25 (289)
Q Consensus 12 ~lgIDiGtt~iK~~ 25 (289)
-+|||+||+++++.
T Consensus 3 ~igIDLGT~~t~i~ 16 (326)
T PF06723_consen 3 DIGIDLGTSNTRIY 16 (326)
T ss_dssp EEEEEE-SSEEEEE
T ss_pred ceEEecCcccEEEE
Confidence 48999999999874
No 148
>COG1214 Inactive homolog of metal-dependent proteases, putative molecular chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=43.19 E-value=54 Score=28.50 Aligned_cols=31 Identities=19% Similarity=0.297 Sum_probs=24.8
Q ss_pred eEEEEEcCCCceEEEEEcC-CCCEEEEEEeec
Q 022949 11 LFLGFDSSTQSLKATVLDS-NLNIVASEQLQF 41 (289)
Q Consensus 11 ~~lgIDiGtt~iK~~l~d~-~G~il~~~~~~~ 41 (289)
.+|+||..|..+-+++++. +++++.......
T Consensus 2 ~iLaiDTs~~~~s~ai~~~~~~~vl~~~~~~~ 33 (220)
T COG1214 2 KILAIDTSTSALSVALYLADDGKVLAEHTEKL 33 (220)
T ss_pred cEEEEEcChhhhhhheeecCCCcEEEEEEEec
Confidence 5899999999999888886 677877766554
No 149
>COG0533 QRI7 Metal-dependent proteases with possible chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=42.76 E-value=59 Score=30.34 Aligned_cols=81 Identities=16% Similarity=0.258 Sum_probs=46.0
Q ss_pred eEEEEEcCCCceEEEEEcCCCCEEEEEEeecccCCCccCCCCceeeCCCCCCCcCCChhHHHHHHHHHHHHHH-hc-CCC
Q 022949 11 LFLGFDSSTQSLKATVLDSNLNIVASEQLQFDSELPHYKTKDGVYRDPSNNGRIVSPTLMWIEALDLMLQKLS-KS-LDL 88 (289)
Q Consensus 11 ~~lgIDiGtt~iK~~l~d~~G~il~~~~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~~~~~~~~~~~~~~l~-~~-~~~ 88 (289)
.+|||.---..+-+++++.++ +++.....+-..++..| |-+ |+ ..++.=.+.+..+++++. +. ++.
T Consensus 2 ~iLGIEtScDeT~vaIv~~~~-ilan~~~sq~~~h~~~G--GVv---Pe------~Asr~H~e~i~~li~~al~eA~~~~ 69 (342)
T COG0533 2 IILGIETSCDETGVAIVDEEK-ILANVVASQIELHARYG--GVV---PE------LASRHHVENIPPLIEEALAEAGVSL 69 (342)
T ss_pred eEEEEEcccccceeEEEeccC-hhheehhhcccccCCCC--CcC---cc------HHHHHHHHHHHHHHHHHHHHcCCCc
Confidence 478888777778889998776 66554433221122211 222 32 011123344555555543 33 567
Q ss_pred CCEeEEEeccCceeeE
Q 022949 89 SKVTAVSGSGQQHGSV 104 (289)
Q Consensus 89 ~~I~aIgis~~~~~~v 104 (289)
.+|.+|+++. ++|++
T Consensus 70 ~dID~IA~T~-gPGL~ 84 (342)
T COG0533 70 EDIDAIAVTA-GPGLG 84 (342)
T ss_pred ccCCEEEEec-CCCch
Confidence 8999999976 67775
No 150
>PRK13927 rod shape-determining protein MreB; Provisional
Probab=41.27 E-value=19 Score=32.95 Aligned_cols=15 Identities=33% Similarity=0.257 Sum_probs=12.9
Q ss_pred EEEEEcCCCceEEEE
Q 022949 12 FLGFDSSTQSLKATV 26 (289)
Q Consensus 12 ~lgIDiGtt~iK~~l 26 (289)
.+|||+||+++|+..
T Consensus 7 ~igIDlGt~~~~i~~ 21 (334)
T PRK13927 7 DLGIDLGTANTLVYV 21 (334)
T ss_pred eeEEEcCcceEEEEE
Confidence 489999999999754
No 151
>PRK13329 pantothenate kinase; Reviewed
Probab=41.11 E-value=20 Score=31.84 Aligned_cols=18 Identities=33% Similarity=0.501 Sum_probs=16.5
Q ss_pred EEEEEcCCCceEEEEEcC
Q 022949 12 FLGFDSSTQSLKATVLDS 29 (289)
Q Consensus 12 ~lgIDiGtt~iK~~l~d~ 29 (289)
+|-||+|.|.+|.+++|.
T Consensus 3 ~LliD~GNTriKw~~~~~ 20 (249)
T PRK13329 3 FLAIDVGNTRLKWGLYDA 20 (249)
T ss_pred EEEEEcCcchheeeEecc
Confidence 678999999999999994
No 152
>PRK07157 acetate kinase; Provisional
Probab=40.29 E-value=45 Score=31.84 Aligned_cols=28 Identities=29% Similarity=0.440 Sum_probs=22.4
Q ss_pred EEEEEcCCCceEEEEEcCC-CCEEEEEEe
Q 022949 12 FLGFDSSTQSLKATVLDSN-LNIVASEQL 39 (289)
Q Consensus 12 ~lgIDiGtt~iK~~l~d~~-G~il~~~~~ 39 (289)
+|.|..|+||+|..|||.+ .+++.....
T Consensus 5 iLvlN~GSSSlKf~lf~~~~~~~l~~G~~ 33 (400)
T PRK07157 5 ILVINAGSSSIKWQLFDKENLNLIASGLA 33 (400)
T ss_pred EEEEECChHhheeEEEECCCCcEEEEEEE
Confidence 8999999999999999953 456655543
No 153
>COG2012 RPB5 DNA-directed RNA polymerase, subunit H, RpoH/RPB5 [Transcription]
Probab=39.13 E-value=55 Score=23.67 Aligned_cols=33 Identities=18% Similarity=0.140 Sum_probs=24.6
Q ss_pred HHHHHHcCCChhhhcCCcccCCccceecCHHHHHHcCCCCCC
Q 022949 233 KIVLEATAPSLEEKLGKLAPAHAVAGCIAPYFVERFHFNKNC 274 (289)
Q Consensus 233 ~~ll~~~g~~~~~~LP~v~~~g~~~G~v~~~~a~~~GL~~g~ 274 (289)
+++|+.+++. ++.||.|..+. -+|+.+|...|=
T Consensus 27 ~~vLk~l~i~-~~qLPkI~~~D--------Pva~~lgak~Gd 59 (80)
T COG2012 27 KEVLKELGIE-PEQLPKIKASD--------PVAKALGAKPGD 59 (80)
T ss_pred HHHHHHhCCC-HHHCCcccccC--------hhHHHccCCCCc
Confidence 5699999998 89999997665 245566666553
No 154
>TIGR03192 benz_CoA_bzdQ benzoyl-CoA reductase, bzd-type, Q subunit. Members of this family are the Q subunit of one of two related types of four-subunit ATP-dependent benzoyl-CoA reductase. This enzyme system catalyzes the dearomatization of benzoyl-CoA, a common intermediate in pathways for the degradation for a number of different aromatic compounds, such as phenol and toluene.
Probab=39.13 E-value=33 Score=31.29 Aligned_cols=23 Identities=22% Similarity=0.102 Sum_probs=20.2
Q ss_pred EEEEcCCCceEEEEEcCCCCEEE
Q 022949 13 LGFDSSTQSLKATVLDSNLNIVA 35 (289)
Q Consensus 13 lgIDiGtt~iK~~l~d~~G~il~ 35 (289)
-.||||++-.|++.+|++|++..
T Consensus 128 tIIDIGGQDsK~I~~d~~G~v~d 150 (293)
T TIGR03192 128 TILDMGGQDCKAIHCDEKGKVTN 150 (293)
T ss_pred EEEEeCCCceEEEEEcCCCcEee
Confidence 45899999999999999998753
No 155
>COG3513 Predicted CRISPR-associated nuclease, contains McrA/HNH-nuclease and RuvC-like nuclease domain [Defense mechanisms]
Probab=38.41 E-value=28 Score=36.10 Aligned_cols=25 Identities=24% Similarity=0.363 Sum_probs=20.9
Q ss_pred CCCceEEEEEcCCCceEEEEEcCCC
Q 022949 7 PKDSLFLGFDSSTQSLKATVLDSNL 31 (289)
Q Consensus 7 ~~~~~~lgIDiGtt~iK~~l~d~~G 31 (289)
|+..|+||+|||+.||-=+++..+-
T Consensus 1 ~~~~yilglDIGi~SVGWAvve~de 25 (1088)
T COG3513 1 MKKAYILGLDIGINSVGWAVVEDDE 25 (1088)
T ss_pred CCcceEEEeeccccceeeEEeeccc
Confidence 4678999999999999988887544
No 156
>TIGR03123 one_C_unchar_1 probable H4MPT-linked C1 transfer pathway protein. This protein family was identified, by the method of partial phylogenetic profiling, as related to the use of tetrahydromethanopterin (H4MPT) as a C-1 carrier. Characteristic markers of the H4MPT-linked C1 transfer pathway include formylmethanofuran dehydrogenase subunits, methenyltetrahydromethanopterin cyclohydrolase, etc. Tetrahydromethanopterin, a tetrahydrofolate analog, occurs in methanogenic archaea, bacterial methanotrophs, planctomycetes, and a few other lineages.
Probab=37.25 E-value=35 Score=31.52 Aligned_cols=26 Identities=12% Similarity=0.010 Sum_probs=20.2
Q ss_pred eEEEEEcCCCceEEEEEcCCCCEEEEE
Q 022949 11 LFLGFDSSTQSLKATVLDSNLNIVASE 37 (289)
Q Consensus 11 ~~lgIDiGtt~iK~~l~d~~G~il~~~ 37 (289)
-+|.+|+|+|+++++++. +|++..+.
T Consensus 129 ~~I~~DmGGTTtDi~~i~-~G~p~~~~ 154 (318)
T TIGR03123 129 ECLFVDMGSTTTDIIPII-DGEVAAKG 154 (318)
T ss_pred CEEEEEcCccceeeEEec-CCEeeeee
Confidence 378899999999999983 56655443
No 157
>TIGR02261 benz_CoA_red_D benzoyl-CoA reductase, bcr type, subunit D. This model describes the D subunit of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This family shows sequence similarity to the A subunit (TIGR02259) and to the 2-hydroxyglutaryl-CoA dehydratase alpha chain.
Probab=36.70 E-value=39 Score=30.33 Aligned_cols=22 Identities=14% Similarity=0.052 Sum_probs=19.7
Q ss_pred EEEEcCCCceEEEEEcCCCCEE
Q 022949 13 LGFDSSTQSLKATVLDSNLNIV 34 (289)
Q Consensus 13 lgIDiGtt~iK~~l~d~~G~il 34 (289)
-.||||++-.|++.+|++|++.
T Consensus 100 tIiDIGGQD~K~I~~~~~G~v~ 121 (262)
T TIGR02261 100 AVLDIGALHGRAIRMDERGKVE 121 (262)
T ss_pred EEEEeCCCceEEEEEcCCCcEe
Confidence 4589999999999999999875
No 158
>PRK13325 bifunctional biotin--[acetyl-CoA-carboxylase] ligase/pantothenate kinase; Reviewed
Probab=35.35 E-value=48 Score=33.40 Aligned_cols=27 Identities=19% Similarity=0.229 Sum_probs=21.2
Q ss_pred CCceEEEEEcCCCceEEEEEcCCCCEEE
Q 022949 8 KDSLFLGFDSSTQSLKATVLDSNLNIVA 35 (289)
Q Consensus 8 ~~~~~lgIDiGtt~iK~~l~d~~G~il~ 35 (289)
+...+|-||+|.|.+|.++++. ++++.
T Consensus 336 ~~~~~LliD~GNTriKwa~~~~-~~~~~ 362 (592)
T PRK13325 336 DSERFLLLDGGNSRLKWAWVEN-GTFAT 362 (592)
T ss_pred CCceEEEEEcCcCceeEEEEcC-Cceee
Confidence 3457888999999999999984 45543
No 159
>TIGR00228 ruvC crossover junction endodeoxyribonuclease RuvC. Endonuclease that resolves Holliday junction intermediates in genetic recombination. The active form of the protein is a dimer. Structure studies reveals that the catalytic center, comprised of four acidic residues, lies at the bottom of a cleft that fits a DNA duplex. The model hits a single Synechocystis PCC6803 protein at a score of 30, below the trusted cutoff, that appears orthologous and may act as authentic RuvC.
Probab=33.41 E-value=1.2e+02 Score=25.02 Aligned_cols=22 Identities=18% Similarity=0.188 Sum_probs=18.9
Q ss_pred EEEEEcCCCceEEEEEcCCCCE
Q 022949 12 FLGFDSSTQSLKATVLDSNLNI 33 (289)
Q Consensus 12 ~lgIDiGtt~iK~~l~d~~G~i 33 (289)
+||||=|+..+=-++++.+++-
T Consensus 1 ILGIDPGl~~tG~gvi~~~~~~ 22 (156)
T TIGR00228 1 ILGIDPGSRVTGYGVIRQVGRQ 22 (156)
T ss_pred CEeECcccccccEEEEEecCCe
Confidence 5899999999999999976553
No 160
>PRK09570 rpoH DNA-directed RNA polymerase subunit H; Reviewed
Probab=32.98 E-value=71 Score=23.18 Aligned_cols=35 Identities=17% Similarity=0.185 Sum_probs=26.5
Q ss_pred HHHHHHcCCChhhhcCCcccCCccceecCHHHHHHcCCCCCCeE
Q 022949 233 KIVLEATAPSLEEKLGKLAPAHAVAGCIAPYFVERFHFNKNCLV 276 (289)
Q Consensus 233 ~~ll~~~g~~~~~~LP~v~~~g~~~G~v~~~~a~~~GL~~g~pV 276 (289)
+++|+.+++. ...||.|..+. -+|+.+|+..|-.|
T Consensus 24 ~~lL~~y~i~-~~qLP~I~~~D--------Pv~r~~g~k~GdVv 58 (79)
T PRK09570 24 KKLLKEYGIK-PEQLPKIKASD--------PVVKAIGAKPGDVI 58 (79)
T ss_pred HHHHHHcCCC-HHHCCceeccC--------hhhhhcCCCCCCEE
Confidence 4699999988 89999997765 34566788777544
No 161
>COG4012 Uncharacterized protein conserved in archaea [Function unknown]
Probab=32.37 E-value=68 Score=28.96 Aligned_cols=26 Identities=23% Similarity=0.203 Sum_probs=22.1
Q ss_pred eEEEEEcCCCceEEEEEcCCCCEEEEE
Q 022949 11 LFLGFDSSTQSLKATVLDSNLNIVASE 37 (289)
Q Consensus 11 ~~lgIDiGtt~iK~~l~d~~G~il~~~ 37 (289)
-.|.||+|+..+-++++|++ +|.+.-
T Consensus 228 palvVd~GngHttaalvded-RI~gv~ 253 (342)
T COG4012 228 PALVVDYGNGHTTAALVDED-RIVGVY 253 (342)
T ss_pred ceEEEEccCCceEEEEecCC-eEEEEe
Confidence 46789999999999999988 777654
No 162
>COG0282 ackA Acetate kinase [Energy production and conversion]
Probab=31.97 E-value=38 Score=32.07 Aligned_cols=27 Identities=30% Similarity=0.407 Sum_probs=21.8
Q ss_pred eEEEEEcCCCceEEEEEcCC-CCEEEEE
Q 022949 11 LFLGFDSSTQSLKATVLDSN-LNIVASE 37 (289)
Q Consensus 11 ~~lgIDiGtt~iK~~l~d~~-G~il~~~ 37 (289)
.+|.|.+|++|+|..|+|.. ++++.+.
T Consensus 2 ~iLviN~GSSSlKf~l~~~~~~~~~~~G 29 (396)
T COG0282 2 KILVINAGSSSLKFQLFDMPELEVLASG 29 (396)
T ss_pred eEEEEecCcchheeeEeccCcccchhhh
Confidence 57899999999999999964 6555443
No 163
>TIGR00250 RNAse_H_YqgF RNAse H-fold protein YqgF. This protein family, which exhibits an RNAse H fold in crystal structure, has been proposed as a putative Holliday junction resolvase, an alternate to RuvC.
Probab=31.84 E-value=42 Score=26.61 Aligned_cols=21 Identities=29% Similarity=0.215 Sum_probs=18.4
Q ss_pred EEEEcCCCceEEEEEcCCCCE
Q 022949 13 LGFDSSTQSLKATVLDSNLNI 33 (289)
Q Consensus 13 lgIDiGtt~iK~~l~d~~G~i 33 (289)
||||+|+..|=.++.|..+.+
T Consensus 1 laiD~G~kriGvA~~d~~~~~ 21 (130)
T TIGR00250 1 LGLDFGTKSIGVAGQDITGWT 21 (130)
T ss_pred CeEccCCCeEEEEEECCCCCE
Confidence 589999999999999887754
No 164
>PF13290 CHB_HEX_C_1: Chitobiase/beta-hexosaminidase C-terminal domain
Probab=31.59 E-value=46 Score=23.15 Aligned_cols=20 Identities=25% Similarity=0.356 Sum_probs=16.7
Q ss_pred EEEEcCCCceEEEEEcCCCCE
Q 022949 13 LGFDSSTQSLKATVLDSNLNI 33 (289)
Q Consensus 13 lgIDiGtt~iK~~l~d~~G~i 33 (289)
|-|+ |++.+|+.+++.+|+.
T Consensus 43 i~i~-~~ttVka~a~~~~g~~ 62 (67)
T PF13290_consen 43 ITIT-GTTTVKARAFDPDGNS 62 (67)
T ss_pred EEec-CCEEEEEEEEcCCCcc
Confidence 4566 9999999999998864
No 165
>KOG2707 consensus Predicted metalloprotease with chaperone activity (RNAse H/HSP70 fold) [Posttranslational modification, protein turnover, chaperones]
Probab=31.11 E-value=67 Score=30.18 Aligned_cols=79 Identities=18% Similarity=0.260 Sum_probs=46.3
Q ss_pred EEEEEcCCCceEEEEEcCCCCEEEEEE---eecccCCCccCCCCceeeCCCCCCCcCCChhHHHHHHHHHHHHHH-hc-C
Q 022949 12 FLGFDSSTQSLKATVLDSNLNIVASEQ---LQFDSELPHYKTKDGVYRDPSNNGRIVSPTLMWIEALDLMLQKLS-KS-L 86 (289)
Q Consensus 12 ~lgIDiGtt~iK~~l~d~~G~il~~~~---~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~~~~~~~~~~~~~~l~-~~-~ 86 (289)
+|||.-.-.-+-++++|+.+++++... ...... .| |-...-.. ..=-+.+..++++.. ++ .
T Consensus 34 VLgIETSCDDTavaVVd~~~~~~~~~i~~~t~~~~~---yG--GI~P~~a~---------~~Hr~ni~~~iqral~aa~~ 99 (405)
T KOG2707|consen 34 VLGIETSCDDTAVAVVDEFSHVLSSEIYSRTEIHRQ---YG--GIIPTVAQ---------LLHRENIPRLIQRALDAAGL 99 (405)
T ss_pred eeeEecccCcceeeeecccccccchhhhhhhHHHHh---hC--CCCChHHH---------HHHHHHHHHHHHHHHHHcCC
Confidence 899988777889999999999887632 111111 10 11111001 011233555555533 33 6
Q ss_pred CCCCEeEEEeccCceeeEE
Q 022949 87 DLSKVTAVSGSGQQHGSVY 105 (289)
Q Consensus 87 ~~~~I~aIgis~~~~~~v~ 105 (289)
.+.++.+|+++. ++|+.+
T Consensus 100 ~p~dldaIAVT~-gPGl~l 117 (405)
T KOG2707|consen 100 SPKDLDAIAVTR-GPGLPL 117 (405)
T ss_pred CcccceeEEEec-CCCcee
Confidence 678899999986 677764
No 166
>PF01191 RNA_pol_Rpb5_C: RNA polymerase Rpb5, C-terminal domain; InterPro: IPR000783 Prokaryotes contain a single DNA-dependent RNA polymerase (RNAP; 2.7.7.6 from EC) that is responsible for the transcription of all genes, while eukaryotes have three classes of RNAPs (I-III) that transcribe different sets of genes. Each class of RNA polymerase is an assemblage of ten to twelve different polypeptides. Certain subunits of RNAPs, including RPB5 (POLR2E in mammals), are common to all three eukaryotic polymerases. RPB5 plays a role in the transcription activation process. Eukaryotic RPB5 has a bipartite structure consisting of a unique N-terminal region (IPR005571 from INTERPRO), plus a C-terminal region that is structurally homologous to the prokaryotic RPB5 homologue, subunit H (gene rpoH) [, , , ]. This entry represents prokaryotic subunit H and the C-terminal domain of eukaryotic RPB5, which share a two-layer alpha/beta fold, with a core structure of beta/alpha/beta/alpha/beta(2). ; GO: 0003677 DNA binding, 0003899 DNA-directed RNA polymerase activity, 0006351 transcription, DNA-dependent; PDB: 1EIK_A 2Y0S_Z 1DZF_A 3GTG_E 2VUM_E 3GTP_E 3GTO_E 3S17_E 3S1R_E 1I3Q_E ....
Probab=30.52 E-value=74 Score=22.77 Aligned_cols=36 Identities=17% Similarity=0.121 Sum_probs=23.9
Q ss_pred cHHHHHHcCCChhhhcCCcccCCccceecCHHHHHHcCCCCCCeE
Q 022949 232 SKIVLEATAPSLEEKLGKLAPAHAVAGCIAPYFVERFHFNKNCLV 276 (289)
Q Consensus 232 ~~~ll~~~g~~~~~~LP~v~~~g~~~G~v~~~~a~~~GL~~g~pV 276 (289)
-+++|+.+++. .+.||.|..+. -+|+.+|+..|-.|
T Consensus 20 ~~~lL~~y~i~-~~qLP~I~~~D--------Pv~r~~g~k~GdVv 55 (74)
T PF01191_consen 20 KKELLKKYNIK-PEQLPKILSSD--------PVARYLGAKPGDVV 55 (74)
T ss_dssp HHHHHHHTT---TTCSSEEETTS--------HHHHHTT--TTSEE
T ss_pred HHHHHHHhCCC-hhhCCcccccC--------hhhhhcCCCCCCEE
Confidence 35799999987 79999987765 45667888777544
No 167
>PF13756 Stimulus_sens_1: Stimulus-sensing domain
Probab=29.66 E-value=58 Score=25.09 Aligned_cols=24 Identities=21% Similarity=0.400 Sum_probs=20.3
Q ss_pred CCCceEEEEEcCCCCEEEEEEeec
Q 022949 18 STQSLKATVLDSNLNIVASEQLQF 41 (289)
Q Consensus 18 Gtt~iK~~l~d~~G~il~~~~~~~ 41 (289)
.-|++|+-|||.+|+++..+..-+
T Consensus 15 ~Pt~~RARlyd~dG~Ll~DSr~l~ 38 (112)
T PF13756_consen 15 SPTRTRARLYDPDGNLLADSRVLY 38 (112)
T ss_pred CCCCceEEEECCCCCEEeeccccc
Confidence 356999999999999999777665
No 168
>KOG1385 consensus Nucleoside phosphatase [Nucleotide transport and metabolism]
Probab=29.65 E-value=61 Score=31.08 Aligned_cols=24 Identities=13% Similarity=0.156 Sum_probs=20.6
Q ss_pred CCceEEEEEcCCCceEEEEEcCCC
Q 022949 8 KDSLFLGFDSSTQSLKATVLDSNL 31 (289)
Q Consensus 8 ~~~~~lgIDiGtt~iK~~l~d~~G 31 (289)
...|.+-||-|+|+.|+-++..+-
T Consensus 65 ~~~Y~iiiDAGSTGsRvHvY~F~~ 88 (453)
T KOG1385|consen 65 KRQYAIIIDAGSTGTRVHVYKFDQ 88 (453)
T ss_pred ceEEEEEEecCCCcceEEEEEecc
Confidence 367999999999999999998543
No 169
>PF02541 Ppx-GppA: Ppx/GppA phosphatase family; InterPro: IPR003695 Exopolyphosphate phosphatase (Ppx) 3.6.1.11 from EC and guanosine pentaphosphate phosphatase (GppA) 3.6.1.40 from EC belong to the sugar kinase/actin/hsp70 superfamily [].; PDB: 3MDQ_A 1U6Z_A 1T6D_B 2J4R_B 1T6C_A 2FLO_B 3CER_B 3HI0_A.
Probab=28.33 E-value=82 Score=28.16 Aligned_cols=34 Identities=21% Similarity=0.171 Sum_probs=25.8
Q ss_pred CCceEEEEEcCCCceEEEEEcCCCCEEEEEEeecc
Q 022949 8 KDSLFLGFDSSTQSLKATVLDSNLNIVASEQLQFD 42 (289)
Q Consensus 8 ~~~~~lgIDiGtt~iK~~l~d~~G~il~~~~~~~~ 42 (289)
..+-.+.||+|+.|+-.++++. +++....+.|+.
T Consensus 110 ~~~~~lviDIGGGStEl~~~~~-~~~~~~~Sl~lG 143 (285)
T PF02541_consen 110 PDKNGLVIDIGGGSTELILFEN-GKVVFSQSLPLG 143 (285)
T ss_dssp TTSSEEEEEEESSEEEEEEEET-TEEEEEEEES--
T ss_pred ccCCEEEEEECCCceEEEEEEC-CeeeEeeeeehH
Confidence 3445677999999999999964 778887877775
No 170
>PF06277 EutA: Ethanolamine utilisation protein EutA; InterPro: IPR009377 Proteins in this entry are EutA ethanolamine utilization proteins, reactivating factors for ethanolamine ammonia lyase, encoded by the ethanolamine utilization eut operon. The holoenzyme of adenosylcobalamin-dependent ethanolamine ammonia-lyase (EutBC, IPR0092462 from INTERPRO, IPR010628 from INTERPRO), which is part of the ethanolamine utilization pathway [, , ], undergoes suicidal inactivation during catalysis as well as inactivation in the absence of substrate. The inactivation involves the irreversible cleavage of the Co-C bond of the coenzyme. The inactivated holoenzyme undergoes rapid and continuous reactivation in the presence of ATP, Mg2+, and free adenosylcobalamin in permeabilised cells (in situ), homogenate, and cell extracts of Escherichia coli. The EutA protein is essential for reactivation. It was demonstrated with purified recombinant EutA that both the suicidally inactivated and O2-inactivated holoethanolamine ammonia lyase underwent rapid reactivation in vitro by EutA in the presence of adenosylcobalamin, ATP, and Mg2+ []. The inactive enzyme-cyanocobalamin complex was also activated in situ and in vitro by EutA under the same conditions. Thus EutA is believed to be the only component of the reactivating factor for ethanolamine ammonia lyase. Reactivation and activation occur through the exchange of modified coenzyme for free intact adenosylcobalamin []. Bacteria that harbor the ethanolamine utilization pathway can use ethanolamine as a source of carbon and nitrogen. For more information on the ethanolamine utilization pathway, please see IPR009194 from INTERPRO, IPR012408 from INTERPRO.
Probab=28.22 E-value=46 Score=32.43 Aligned_cols=18 Identities=22% Similarity=0.276 Sum_probs=14.5
Q ss_pred eEEEEEcCCCceEEEEEc
Q 022949 11 LFLGFDSSTQSLKATVLD 28 (289)
Q Consensus 11 ~~lgIDiGtt~iK~~l~d 28 (289)
+-+|||||||.++.++-.
T Consensus 4 ~SVGIDIGTSTTQlvfSr 21 (473)
T PF06277_consen 4 LSVGIDIGTSTTQLVFSR 21 (473)
T ss_pred EEEEEeecCCceeEEEEE
Confidence 457999999999877644
No 171
>PRK08557 hypothetical protein; Provisional
Probab=27.40 E-value=48 Score=31.89 Aligned_cols=60 Identities=8% Similarity=-0.040 Sum_probs=41.1
Q ss_pred CCCCCeeccCCcHHHHHHHHHH-hCChHHHHHH----HCCCCCCCChHHHHHHHHhcCcchHhhccccc
Q 022949 133 TKESPVWMDSSTTAQCREIEKA-VGGALELSKL----TGSRGYERFTGPQIRKLFQTQPGVYDDTERIS 196 (289)
Q Consensus 133 l~~~i~w~D~Ra~~~~~~~~~~-~~~~~~~~~~----tG~~~~~~~~~~kl~wl~~~~pe~~~~~~~~~ 196 (289)
+.|+..|.+. ..-+.+.+. ++ -..+|.. .|+.+-+......+..+++++||.|++...++
T Consensus 316 i~PI~~Wt~~---dVW~YI~~~~lp-~npLY~~Gy~riGC~~Cp~~~~~e~~~l~~~~Pe~~~k~~~~l 380 (417)
T PRK08557 316 VFPILDWNSL---DIWSYIYLNDIL-YNPLYDKGFERIGCYLCPSALNSEFLRVKELYPELFNRWVKYL 380 (417)
T ss_pred EEecccCCHH---HHHHHHHHcCCC-CCchhhCCCCCCCccCCCCccHHHHHHHHHHCHHHHHHHHHHH
Confidence 3577888764 333344432 21 2344444 88888888888999999999999999876654
No 172
>PRK10719 eutA reactivating factor for ethanolamine ammonia lyase; Provisional
Probab=27.24 E-value=43 Score=32.66 Aligned_cols=14 Identities=21% Similarity=0.394 Sum_probs=0.0
Q ss_pred EEEEcCCCceEEEE
Q 022949 13 LGFDSSTQSLKATV 26 (289)
Q Consensus 13 lgIDiGtt~iK~~l 26 (289)
+|||||||.++.++
T Consensus 9 VGIDIGTsTTqlvf 22 (475)
T PRK10719 9 VGIDIGTTTTQVIF 22 (475)
T ss_pred EEEeccCceEEEEE
No 173
>PRK00180 acetate kinase A/propionate kinase 2; Reviewed
Probab=26.93 E-value=85 Score=30.03 Aligned_cols=28 Identities=25% Similarity=0.361 Sum_probs=21.9
Q ss_pred EEEEEcCCCceEEEEEcCC-CCEEEEEEe
Q 022949 12 FLGFDSSTQSLKATVLDSN-LNIVASEQL 39 (289)
Q Consensus 12 ~lgIDiGtt~iK~~l~d~~-G~il~~~~~ 39 (289)
+|.|..|+||+|..||+.+ .+.+.....
T Consensus 3 iLvlN~GSSSlKf~lf~~~~~~~l~~G~~ 31 (402)
T PRK00180 3 ILVLNAGSSSLKFQLIDMPNEEVLASGLV 31 (402)
T ss_pred EEEEECChHhheEEEEECCCCcEEEEEEE
Confidence 8999999999999999964 355554443
No 174
>PF08735 DUF1786: Putative pyruvate format-lyase activating enzyme (DUF1786); InterPro: IPR014846 This family is annotated as pyruvate formate-lyase activating enzyme (1.97.1.4 from EC) in UniProt. It is not clear where this annotation comes from.
Probab=26.86 E-value=1.4e+02 Score=26.78 Aligned_cols=31 Identities=6% Similarity=-0.015 Sum_probs=25.0
Q ss_pred CCCCceEEEEEcCCCceEEEEEcCCCCEEEEE
Q 022949 6 LPKDSLFLGFDSSTQSLKATVLDSNLNIVASE 37 (289)
Q Consensus 6 ~~~~~~~lgIDiGtt~iK~~l~d~~G~il~~~ 37 (289)
++..+=+++||+|.+.+-++++ .+|+|.+.-
T Consensus 163 v~~~~~~~~vniGN~HTlaa~v-~~~rI~Gvf 193 (254)
T PF08735_consen 163 VSSREGIIVVNIGNGHTLAALV-KDGRIYGVF 193 (254)
T ss_pred hhccCCeEEEEeCCccEEEEEE-eCCEEEEEE
Confidence 3445668899999999999999 788887654
No 175
>PF07736 CM_1: Chorismate mutase type I; InterPro: IPR008243 Chorismate mutase (CM; 5.4.99.5 from EC) catalyses the reaction at the branch point of the biosynthetic pathway leading to the three aromatic amino acids, phenylalanine, tryptophan and tyrosine (chorismic acid is the last common intermediate, and CM leads to the L-phenylalanine/L-tyrosine branch). It is part of the shikimate pathway, which is present only in bacteria, fungi and plants. This entry represents a family of monofunctional (non-fused) chorismate mutases from Gram-positive bacteria (Firmicutes) and cyanobacteria. Trusted members of the family are found in operons with other enzymes of the chorismate pathways, both up- and downstream of CM (Listeria, Bacillus, Oceanobacillus) or are the sole CM in the genome where the other members of the chorismate pathways are found elsewhere in the genome (Nostoc, Thermosynechococcus). They are monofunctional, homotrimeric, nonallosteric enzymes and are not regulated by the end-product aromatic amino acids. The three types of CM are AroQ class, Prokaryotic type (e.g., IPR008239 from INTERPRO amongst others); AroQ class, Eukaryotic type (IPR008238 from INTERPRO); and AroH class. They fall into two structural folds (AroQ class and AroH class) which are completely unrelated []. The two types of the AroQ structural class (the Escherichia coli CM dimer and the yeast CM monomer) can be structurally superimposed, and the topology of the four-helix bundle forming the active site is conserved []. For additional information please see [, , , , , , ].; PDB: 2CHS_K 2CHT_L 1COM_J 1FNJ_A 1FNK_A 1DBF_C 1UI9_A 1ODE_A 1UFY_A 1XHO_C ....
Probab=26.19 E-value=1e+02 Score=24.21 Aligned_cols=31 Identities=13% Similarity=0.128 Sum_probs=23.9
Q ss_pred hHHHHHHHHHHHHHHh-c-CCCCCEeEEEeccC
Q 022949 69 LMWIEALDLMLQKLSK-S-LDLSKVTAVSGSGQ 99 (289)
Q Consensus 69 ~~~~~~~~~~~~~l~~-~-~~~~~I~aIgis~~ 99 (289)
++++++..++++++.+ + +++++|.+|=||.+
T Consensus 16 e~I~~at~eLl~~i~~~N~l~~~dIvSi~FT~T 48 (118)
T PF07736_consen 16 EEILEATRELLEEILERNELSPEDIVSIIFTVT 48 (118)
T ss_dssp HHHHHHHHHHHHHHHHHTT--GGGEEEEEEEE-
T ss_pred HHHHHHHHHHHHHHHHHcCCCHHHEEEEEEEeC
Confidence 4999999999998765 4 77889999999874
No 176
>KOG0101 consensus Molecular chaperones HSP70/HSC70, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=25.90 E-value=71 Score=32.29 Aligned_cols=28 Identities=29% Similarity=0.375 Sum_probs=21.2
Q ss_pred CCceEEEEEcCCCceEEEEEcC-CCCEEE
Q 022949 8 KDSLFLGFDSSTQSLKATVLDS-NLNIVA 35 (289)
Q Consensus 8 ~~~~~lgIDiGtt~iK~~l~d~-~G~il~ 35 (289)
.....+|||+|||...++++.. ...+++
T Consensus 5 ~~~~aiGIdlGtT~s~v~v~~~~~v~iia 33 (620)
T KOG0101|consen 5 PESVAIGIDLGTTYSCVGVYQSGKVEIIA 33 (620)
T ss_pred cccceeeEeccCccceeeeEcCCcceeee
Confidence 4557899999999999999962 344443
No 177
>PF11141 DUF2914: Protein of unknown function (DUF2914); InterPro: IPR022606 This bacterial family of proteins has no known function.
Probab=25.46 E-value=1.1e+02 Score=21.09 Aligned_cols=19 Identities=16% Similarity=0.337 Sum_probs=15.7
Q ss_pred eEEEEEcCCCCEEEEEEee
Q 022949 22 LKATVLDSNLNIVASEQLQ 40 (289)
Q Consensus 22 iK~~l~d~~G~il~~~~~~ 40 (289)
=|+-|+|++|++|++..+.
T Consensus 46 WrV~V~~~~G~~l~~~~F~ 64 (66)
T PF11141_consen 46 WRVEVVDEDGQVLGSLRFS 64 (66)
T ss_pred EEEEEEcCCCCEEEEEEEE
Confidence 3788999999999987664
No 178
>PRK09438 nudB dihydroneopterin triphosphate pyrophosphatase; Provisional
Probab=24.39 E-value=2.2e+02 Score=22.37 Aligned_cols=18 Identities=11% Similarity=0.324 Sum_probs=13.8
Q ss_pred ceEEEEEcCCCCEEEEEE
Q 022949 21 SLKATVLDSNLNIVASEQ 38 (289)
Q Consensus 21 ~iK~~l~d~~G~il~~~~ 38 (289)
++.++++|.+|+++-..+
T Consensus 9 ~v~~vi~~~~~~vLl~~r 26 (148)
T PRK09438 9 SVLVVIYTPDLGVLMLQR 26 (148)
T ss_pred EEEEEEEeCCCeEEEEEe
Confidence 678889999998776543
No 179
>TIGR00241 CoA_E_activ CoA-substrate-specific enzyme activase, putative. This domain may be involved in generating or regenerating the active sites of enzymes related to (R)-2-hydroxyglutaryl-CoA dehydratase and benzoyl-CoA reductase.
Probab=24.13 E-value=69 Score=28.08 Aligned_cols=20 Identities=20% Similarity=0.141 Sum_probs=18.1
Q ss_pred EEEcCCCceEEEEEcCCCCEE
Q 022949 14 GFDSSTQSLKATVLDSNLNIV 34 (289)
Q Consensus 14 gIDiGtt~iK~~l~d~~G~il 34 (289)
.||||++.+|++.++ +|++.
T Consensus 95 vidiGgqd~k~i~~~-~g~~~ 114 (248)
T TIGR00241 95 VIDIGGQDSKVIKID-DGKVD 114 (248)
T ss_pred EEEecCCeeEEEEEC-CCcEe
Confidence 689999999999999 88765
No 180
>PF01150 GDA1_CD39: GDA1/CD39 (nucleoside phosphatase) family; InterPro: IPR000407 A number of nucleoside diphosphate and triphosphate hydrolases as well as some yet uncharacterised proteins have been found to belong to the same family [, ]. The uncharacterised proteins all seem to be membrane-bound. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0016787 hydrolase activity; PDB: 3AAP_A 3AAR_A 3AAQ_A 3AGR_A 4A5B_B 4A57_D 4A59_A 4A5A_B 3CJA_A 3CJ1_A ....
Probab=24.11 E-value=59 Score=31.10 Aligned_cols=21 Identities=10% Similarity=0.056 Sum_probs=18.9
Q ss_pred CceEEEEEcCCCceEEEEEcC
Q 022949 9 DSLFLGFDSSTQSLKATVLDS 29 (289)
Q Consensus 9 ~~~~lgIDiGtt~iK~~l~d~ 29 (289)
..|.+.||.|+|++|+-||.-
T Consensus 7 ~~y~vviDAGSsgsR~~vy~~ 27 (434)
T PF01150_consen 7 RKYGVVIDAGSSGSRVHVYKW 27 (434)
T ss_dssp EEEEEEEEEESSEEEEEEEEE
T ss_pred ccEEEEEEcCCCCceEEEEEE
Confidence 468999999999999999984
No 181
>TIGR03706 exo_poly_only exopolyphosphatase. It appears that a single enzyme may act as both exopolyphosphatase (Ppx) and guanosine pentaphosphate phosphohydrolase (GppA) in a number of species. Members of the seed alignment use to define this exception-level model are encoded adjacent to a polyphosphate kinase 1 gene, and the trusted cutoff is set high enough (425) that no genome has a second hit. Therefore all members may be presumed to at least share exopolyphospatase activity, and may lack GppA activity. GppA acts in the stringent response.
Probab=23.51 E-value=1.2e+02 Score=27.42 Aligned_cols=31 Identities=13% Similarity=-0.009 Sum_probs=25.2
Q ss_pred EEEEEcCCCceEEEEEcCCCCEEEEEEeeccc
Q 022949 12 FLGFDSSTQSLKATVLDSNLNIVASEQLQFDS 43 (289)
Q Consensus 12 ~lgIDiGtt~iK~~l~d~~G~il~~~~~~~~~ 43 (289)
.+.+|+|+.|+..++++ +++++...+.|+..
T Consensus 127 ~~v~DiGGGSte~~~~~-~~~~~~~~Sl~lG~ 157 (300)
T TIGR03706 127 GLVVDIGGGSTELILGK-DFEPGEGVSLPLGC 157 (300)
T ss_pred cEEEEecCCeEEEEEec-CCCEeEEEEEccce
Confidence 37899999999999987 46787777777754
No 182
>TIGR02259 benz_CoA_red_A benzoyl-CoA reductase, bcr type, subunit A. This model describes A, or gamma, subunit of the bcr type of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This family shows strong sequence similarity to the 2-hydroxyglutaryl-CoA dehydratase alpha chain and to subunits of different types of benzoyl-CoA reductase (such as the bzd type).
Probab=23.38 E-value=87 Score=30.06 Aligned_cols=22 Identities=18% Similarity=0.098 Sum_probs=19.8
Q ss_pred EEEEcCCCceEEEEEcCCCCEE
Q 022949 13 LGFDSSTQSLKATVLDSNLNIV 34 (289)
Q Consensus 13 lgIDiGtt~iK~~l~d~~G~il 34 (289)
-.||||++-+|++-+|.+|++.
T Consensus 270 TIIDIGGQDsK~I~ld~~G~V~ 291 (432)
T TIGR02259 270 TVLDIGGQDTKGIQIDDHGIVE 291 (432)
T ss_pred EEEEeCCCceEEEEEcCCCcEe
Confidence 4589999999999999999875
No 183
>PF13986 DUF4224: Domain of unknown function (DUF4224)
Probab=23.16 E-value=1.2e+02 Score=19.47 Aligned_cols=24 Identities=38% Similarity=0.365 Sum_probs=19.2
Q ss_pred hHHHHHHHCCCCCCCChHHHHHHHHhcC
Q 022949 158 ALELSKLTGSRGYERFTGPQIRKLFQTQ 185 (289)
Q Consensus 158 ~~~~~~~tG~~~~~~~~~~kl~wl~~~~ 185 (289)
.+++.+.||.. ....+..||+++-
T Consensus 5 ~~El~elTG~k----~~~~Q~~~L~~~G 28 (47)
T PF13986_consen 5 DEELQELTGYK----RPSKQIRWLRRNG 28 (47)
T ss_pred HHHHHHHHCCC----CHHHHHHHHHHCC
Confidence 57888999965 4678999999873
No 184
>COG1077 MreB Actin-like ATPase involved in cell morphogenesis [Cell division and chromosome partitioning]
Probab=23.00 E-value=63 Score=29.98 Aligned_cols=16 Identities=25% Similarity=0.173 Sum_probs=14.1
Q ss_pred EEEEEcCCCceEEEEE
Q 022949 12 FLGFDSSTQSLKATVL 27 (289)
Q Consensus 12 ~lgIDiGtt~iK~~l~ 27 (289)
-+|||+||-|+++.+-
T Consensus 8 diGIDLGTanTlV~~k 23 (342)
T COG1077 8 DIGIDLGTANTLVYVK 23 (342)
T ss_pred cceeeecccceEEEEc
Confidence 6899999999988766
No 185
>cd02185 AroH Chorismate mutase (AroH) is one of at least five chorismate-utilizing enzymes present in microorganisms that catalyze the rearrangement of chorismate to prephenic acid, the first committed step in the biosynthesis of aromatic amino acids. In prokaryotes, chorismate mutase may be fused to prephenate dehydratase, prephenate dehydrogenase, or 3-deoxy-D-arabino-heptulosonat-7-phosphate (DAHP) as part of a bifunctional enzyme. The AroH domain forms a homotrimer with three-fold symmetry.
Probab=22.80 E-value=1.1e+02 Score=24.03 Aligned_cols=31 Identities=13% Similarity=0.115 Sum_probs=25.8
Q ss_pred hHHHHHHHHHHHHHHh-c-CCCCCEeEEEeccC
Q 022949 69 LMWIEALDLMLQKLSK-S-LDLSKVTAVSGSGQ 99 (289)
Q Consensus 69 ~~~~~~~~~~~~~l~~-~-~~~~~I~aIgis~~ 99 (289)
++++++..++++++.+ + +.+++|.+|=||.+
T Consensus 16 e~I~~at~eLl~~i~~~N~l~~edivSv~FT~T 48 (117)
T cd02185 16 EEILEATRELLEEIIERNNIKPEDIISVIFTVT 48 (117)
T ss_pred HHHHHHHHHHHHHHHHHcCCCHHHEEEEEEEeC
Confidence 4899999999988765 4 77789999999875
No 186
>PF01968 Hydantoinase_A: Hydantoinase/oxoprolinase; InterPro: IPR002821 This family includes the enzymes hydantoinase and oxoprolinase (3.5.2.9 from EC). Both reactions involve the hydrolysis of 5-membered rings via hydrolysis of their internal imide bonds [].; GO: 0016787 hydrolase activity; PDB: 3C0B_C 3CET_B.
Probab=22.66 E-value=74 Score=28.79 Aligned_cols=24 Identities=4% Similarity=-0.078 Sum_probs=17.2
Q ss_pred CceEEEEEcCCCceEEEEEcCCCCE
Q 022949 9 DSLFLGFDSSTQSLKATVLDSNLNI 33 (289)
Q Consensus 9 ~~~~lgIDiGtt~iK~~l~d~~G~i 33 (289)
.+-.|.+|+|+|++.++++. +|+.
T Consensus 76 ~~~~i~vDmGGTTtDi~~i~-~G~p 99 (290)
T PF01968_consen 76 LENAIVVDMGGTTTDIALIK-DGRP 99 (290)
T ss_dssp -SSEEEEEE-SS-EEEEEEE-TTEE
T ss_pred CCCEEEEeCCCCEEEEEEEE-CCee
Confidence 34578899999999999994 6754
No 187
>PF13860 FlgD_ig: FlgD Ig-like domain; PDB: 3C12_A 3OSV_A.
Probab=22.51 E-value=2.2e+02 Score=20.18 Aligned_cols=31 Identities=19% Similarity=0.236 Sum_probs=22.8
Q ss_pred ceEEE--EEcCCCceEEEEEcCCCCEEEEEEee
Q 022949 10 SLFLG--FDSSTQSLKATVLDSNLNIVASEQLQ 40 (289)
Q Consensus 10 ~~~lg--IDiGtt~iK~~l~d~~G~il~~~~~~ 40 (289)
+.-+. ++-..+++++.|+|.+|++|.+....
T Consensus 13 ~~~~~~~l~~~a~~v~v~I~d~~G~~V~t~~~~ 45 (81)
T PF13860_consen 13 KGSIEYTLPEDADNVTVTIYDSNGQVVRTISLG 45 (81)
T ss_dssp EEEEEEEECSSCEEEEEEEEETTS-EEEEEEEE
T ss_pred EEEEEEeCCCcccEEEEEEEcCCCCEEEEEEcC
Confidence 34444 56667789999999999999877654
No 188
>TIGR01796 CM_mono_aroH monofunctional chorismate mutase, gram positive type, clade 1. This model represents a family of monofunctional (non-fused) chorismate mutases from gram positive bacteria (Firmicutes) and cyanobacteria. Trusted members of the family are found in operons with other enzymes of the chorismate pathways, both up- and downstream of CM (Listeria, Bacillus, Oceanobacillus) or are the sole CM in the genome where the other members of the chorismate pathways are found elsewhere in the genome (Nostoc, Thermosynechococcus).
Probab=22.05 E-value=1.2e+02 Score=23.71 Aligned_cols=31 Identities=19% Similarity=0.063 Sum_probs=25.8
Q ss_pred hHHHHHHHHHHHHHHh-c-CCCCCEeEEEeccC
Q 022949 69 LMWIEALDLMLQKLSK-S-LDLSKVTAVSGSGQ 99 (289)
Q Consensus 69 ~~~~~~~~~~~~~l~~-~-~~~~~I~aIgis~~ 99 (289)
++++++..++++++.+ + +.+++|.+|=||.+
T Consensus 16 e~I~~at~eLl~~ii~~N~l~~edivSv~FT~T 48 (117)
T TIGR01796 16 EEIGEAVAELLTELMERNELTPEDLISVIFTVT 48 (117)
T ss_pred HHHHHHHHHHHHHHHHHcCCCHHHEEEEEEEec
Confidence 3899999999988765 4 77889999999875
No 189
>KOG0104 consensus Molecular chaperones GRP170/SIL1, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=21.67 E-value=85 Score=32.47 Aligned_cols=26 Identities=12% Similarity=0.105 Sum_probs=21.3
Q ss_pred CCceEEEEEcCCCceEEEEEcCCCCEE
Q 022949 8 KDSLFLGFDSSTQSLKATVLDSNLNIV 34 (289)
Q Consensus 8 ~~~~~lgIDiGtt~iK~~l~d~~G~il 34 (289)
..--+++||+|+..+|++|+.. |-.+
T Consensus 20 ~~~AvmsVDlGse~~Kv~vVkP-GvPm 45 (902)
T KOG0104|consen 20 SALAVMSVDLGSEWIKVAVVKP-GVPM 45 (902)
T ss_pred chhhheeeecccceeEEEEecC-CCCe
Confidence 3446799999999999999998 6444
No 190
>PF06277 EutA: Ethanolamine utilisation protein EutA; InterPro: IPR009377 Proteins in this entry are EutA ethanolamine utilization proteins, reactivating factors for ethanolamine ammonia lyase, encoded by the ethanolamine utilization eut operon. The holoenzyme of adenosylcobalamin-dependent ethanolamine ammonia-lyase (EutBC, IPR0092462 from INTERPRO, IPR010628 from INTERPRO), which is part of the ethanolamine utilization pathway [, , ], undergoes suicidal inactivation during catalysis as well as inactivation in the absence of substrate. The inactivation involves the irreversible cleavage of the Co-C bond of the coenzyme. The inactivated holoenzyme undergoes rapid and continuous reactivation in the presence of ATP, Mg2+, and free adenosylcobalamin in permeabilised cells (in situ), homogenate, and cell extracts of Escherichia coli. The EutA protein is essential for reactivation. It was demonstrated with purified recombinant EutA that both the suicidally inactivated and O2-inactivated holoethanolamine ammonia lyase underwent rapid reactivation in vitro by EutA in the presence of adenosylcobalamin, ATP, and Mg2+ []. The inactive enzyme-cyanocobalamin complex was also activated in situ and in vitro by EutA under the same conditions. Thus EutA is believed to be the only component of the reactivating factor for ethanolamine ammonia lyase. Reactivation and activation occur through the exchange of modified coenzyme for free intact adenosylcobalamin []. Bacteria that harbor the ethanolamine utilization pathway can use ethanolamine as a source of carbon and nitrogen. For more information on the ethanolamine utilization pathway, please see IPR009194 from INTERPRO, IPR012408 from INTERPRO.
Probab=21.36 E-value=1.1e+02 Score=29.91 Aligned_cols=36 Identities=17% Similarity=0.236 Sum_probs=27.6
Q ss_pred CCCCCCCceEEEEEcCCCceEEEEEcCCCCEEEEEEe
Q 022949 3 DYSLPKDSLFLGFDSSTQSLKATVLDSNLNIVASEQL 39 (289)
Q Consensus 3 ~~~~~~~~~~lgIDiGtt~iK~~l~d~~G~il~~~~~ 39 (289)
.||-.....++=||||+...+.++|+ +|+++++.-.
T Consensus 136 ~~S~~~~~~V~NiDIGGGTtN~avf~-~G~v~~T~cl 171 (473)
T PF06277_consen 136 ALSKEHHTVVANIDIGGGTTNIAVFD-NGEVIDTACL 171 (473)
T ss_pred HHhhhhCCeEEEEEeCCCceeEEEEE-CCEEEEEEEE
Confidence 46666678899999999999999996 5666655543
No 191
>PRK13795 hypothetical protein; Provisional
Probab=21.36 E-value=39 Score=34.34 Aligned_cols=33 Identities=15% Similarity=0.178 Sum_probs=27.6
Q ss_pred HHCCCCCCCChHHHHHHHHhcCcchHhhccccc
Q 022949 164 LTGSRGYERFTGPQIRKLFQTQPGVYDDTERIS 196 (289)
Q Consensus 164 ~tG~~~~~~~~~~kl~wl~~~~pe~~~~~~~~~ 196 (289)
+.|+.+-+...+..+..+++++||.|++-..++
T Consensus 410 riGC~~Cp~~~~~e~~~~~~~~Pe~~~~~~~~l 442 (636)
T PRK13795 410 RIGCWLCPSSSLAEFERLKELHPELYEKWEAFL 442 (636)
T ss_pred CCCccCCCCCCHHHHHHHHHHCHHHHHHHHHHH
Confidence 467777778888999999999999999876655
No 192
>PF08841 DDR: Diol dehydratase reactivase ATPase-like domain; InterPro: IPR009191 Diol dehydratase (propanediol dehydratase) and glycerol dehydratase undergo concomitant, irreversible inactivation by glycerol during catalysis [, ]. This inactivation is mechanism-based and involves cleavage of the Co-C bond of the cobalamin cofactor, coenzyme B12 (AdoCbl), forming 5 -deoxyadenosine and a modified coenzyme []. Irreversible inactivation of the enzyme results from tight binding to the modified, inactive cobalamin [, ]. The glycerol-inactivated enzyme undergoes rapid reactivation in the presence of free AdoCbl, ATP, and Mg 2+ (or Mn 2+ ) []. Reactivation is mediated by a complex of two proteins: a large subunit (DdrA/PduG) and a small subunit (DdrB/PduH, IPR009192 from INTERPRO) [, ]. The two subunits of the reactivating factor for glycerol dehydratase have been shown to form a tight complex that serves to reactivate the glycerol-inactivated holoenzyme, as well as O2-inactivated holoenzyme in vitro []. It is believed that this reactivating factor replaces an enzyme-bound, adenine-lacking inactive cobalamin with a free, adenine-containing active cobalamin []. PduG and PduH, part of the propanediol utilization pdu operon, are believed to have a similar function in the reactivation of propanediol dehydratase. PduG was also proposed, on the basis of genetic tests, to be a cobalamin adenosyltransferase involved in the conversion of inactive cobalamin (B12) to AdoCbl []. However, this function has since been shown to belong to another protein, PduO (IPR009221 from INTERPRO, IPR012228 from INTERPRO) []. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO for more details on the propanediol utilization pathway and pdu operon, as well as on the glycerol breakdown pathway.; PDB: 1NBW_C 2D0P_C 2D0O_C.
Probab=21.18 E-value=1.5e+02 Score=27.17 Aligned_cols=28 Identities=14% Similarity=0.158 Sum_probs=20.4
Q ss_pred EEEEEcCCCceEEEEEcCCCCEEEEEEe
Q 022949 12 FLGFDSSTQSLKATVLDSNLNIVASEQL 39 (289)
Q Consensus 12 ~lgIDiGtt~iK~~l~d~~G~il~~~~~ 39 (289)
+.-+|+|+.|+-+++++.+|++....-.
T Consensus 136 laIlDmG~GSTDAsii~~~g~v~~iHlA 163 (332)
T PF08841_consen 136 LAILDMGGGSTDASIINRDGEVTAIHLA 163 (332)
T ss_dssp EEEEEE-SSEEEEEEE-TTS-EEEEEEE
T ss_pred eEEEecCCCcccHHHhCCCCcEEEEEec
Confidence 4458999999999999999998775533
No 193
>COG3461 Uncharacterized conserved protein [Function unknown]
Probab=20.82 E-value=53 Score=24.38 Aligned_cols=51 Identities=20% Similarity=0.215 Sum_probs=29.1
Q ss_pred CCCeeccCCcHHH----HHHHHHHhCChHHHHHHHCCCCCCCChHHHHHHHHhcCcchHhhccccc
Q 022949 135 ESPVWMDSSTTAQ----CREIEKAVGGALELSKLTGSRGYERFTGPQIRKLFQTQPGVYDDTERIS 196 (289)
Q Consensus 135 ~~i~w~D~Ra~~~----~~~~~~~~~~~~~~~~~tG~~~~~~~~~~kl~wl~~~~pe~~~~~~~~~ 196 (289)
.+++|.|.|+... +..+.+.- .++-++ ....-|-|+++|.|..-+..+.++
T Consensus 31 EA~~wY~qR~~~tKD~~~r~Imehn--rdeE~e---------Ha~mlLEwlrR~~p~wd~eL~eiL 85 (103)
T COG3461 31 EAMMWYDQRADATKDEDLRAIMEHN--RDEEKE---------HAAMLLEWLRRHDPAWDAELHEIL 85 (103)
T ss_pred HHHHHHHHHhhccccHhHHHHHHHc--ccHHHH---------HHHHHHHHHHHcCchHHHHHHHHH
Confidence 4788988887643 33444331 111111 234567799999997655444433
No 194
>COG0145 HyuA N-methylhydantoinase A/acetone carboxylase, beta subunit [Amino acid transport and metabolism / Secondary metabolites biosynthesis, transport, and catabolism]
Probab=20.50 E-value=76 Score=32.55 Aligned_cols=17 Identities=18% Similarity=0.192 Sum_probs=16.1
Q ss_pred EEEEEcCCCceEEEEEc
Q 022949 12 FLGFDSSTQSLKATVLD 28 (289)
Q Consensus 12 ~lgIDiGtt~iK~~l~d 28 (289)
++++|+|+|+++++++.
T Consensus 280 ~i~~DmGGTStDva~i~ 296 (674)
T COG0145 280 AIVFDMGGTSTDVALII 296 (674)
T ss_pred EEEEEcCCcceeeeeee
Confidence 89999999999999986
No 195
>cd00496 PheRS_alpha_core Phenylalanyl-tRNA synthetase (PheRS) alpha chain catalytic core domain. PheRS belongs to class II aminoacyl-tRNA synthetases (aaRS) based upon its structure and the presence of three characteristic sequence motifs. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. While class II aaRSs generally aminoacylate the 3'-OH ribose of the appropriate tRNA, PheRS is an exception in that it attaches the amino acid at the 2'-OH group, like class I aaRSs. PheRS is an alpha-2/ beta-2 tetramer.
Probab=20.10 E-value=89 Score=26.88 Aligned_cols=27 Identities=11% Similarity=0.142 Sum_probs=21.8
Q ss_pred cceecCHHHHHHcCCCCCCeEEEccch
Q 022949 256 VAGCIAPYFVERFHFNKNCLVVQWSGD 282 (289)
Q Consensus 256 ~~G~v~~~~a~~~GL~~g~pV~~g~~D 282 (289)
.+|.++|++++.+|+|...||++..-|
T Consensus 169 ~~G~lhP~vl~~~~i~~~~~v~~~Eid 195 (218)
T cd00496 169 GCGMVRPEVLENAGIDEEYSGFAFGIG 195 (218)
T ss_pred ecccccHHHHHHCCCCCCceEEEEEec
Confidence 678999999999999655688776554
Done!