BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 022951
(289 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1ZIN|A Chain A, Adenylate Kinase With Bound Ap5a
pdb|1ZIO|A Chain A, Phosphotransferase
pdb|1ZIP|A Chain A, Bacillus Stearothermophilus Adenylate Kinase
Length = 217
Score = 106 bits (265), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 65/205 (31%), Positives = 102/205 (49%), Gaps = 36/205 (17%)
Query: 75 VQWVFLGCPGVGKGTYASRLSNLLGVPHIATGDLL--------------DEIVSQGKLVS 120
+ V +G PG GKGT A ++ G+PHI+TGD+ + + +G LV
Sbjct: 1 MNLVLMGLPGAGKGTQAEKIVAAYGIPHISTGDMFRAAMKEGTPLGLQAKQYMDRGDLVP 60
Query: 121 DEIIINLLSKRLEAGEAKGEAGFILDGFPRT----EILEGV-TDI----DLVINLKLREE 171
DE+ I ++ +RL + + GF+LDGFPRT E LE + DI D VI++ +R++
Sbjct: 61 DEVTIGIVRERLSKDDCQN--GFLLDGFPRTVAQAEALETMLADIGRKLDYVIHIDVRQD 118
Query: 172 ALLAKCLGRRICSECGGNYNVACIDIKGENGNXXXXXXXXXXXXHCASKLITRSDDKEEV 231
L+ + GRRIC CG Y++ C +L R+DD E
Sbjct: 119 VLMERLTGRRICRNCGATYHL-----------IFHPPAKPGVCDKCGGELYQRADDNEAT 167
Query: 232 VRERLRIYNEKSRPVEEFYRRRGKL 256
V RL + ++ +P+ +FY ++G L
Sbjct: 168 VANRLEVNMKQMKPLVDFYEQKGYL 192
>pdb|2ORI|A Chain A, Crystal Structure Of A Thermostable Mutant Of Bacillus
Subtilis Adenylate Kinase (A193vQ199R)
pdb|2ORI|B Chain B, Crystal Structure Of A Thermostable Mutant Of Bacillus
Subtilis Adenylate Kinase (A193vQ199R)
Length = 216
Score = 103 bits (258), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 65/206 (31%), Positives = 102/206 (49%), Gaps = 36/206 (17%)
Query: 75 VQWVFLGCPGVGKGTYASRLSNLLGVPHIATGDLL--------------DEIVSQGKLVS 120
+ V +G PG GKGT R+ G+PHI+TGD+ + +G+LV
Sbjct: 1 MNLVLMGLPGAGKGTQGERIVEDYGIPHISTGDMFRAAMKEETPLGLEAKSYIDKGELVP 60
Query: 121 DEIIINLLSKRLEAGEAKGEAGFILDGFPRTEILEGVTD---------IDLVINLKLREE 171
DE+ I ++ +RL G+ E GF+LDGFPRT + ID VIN+++ ++
Sbjct: 61 DEVTIGIVKERL--GKDDCERGFLLDGFPRTVAQAEALEEILEEYGKPIDYVINIEVDKD 118
Query: 172 ALLAKCLGRRICSECGGNYNVACIDIKGENGNXXXXXXXXXXXXHCASKLITRSDDKEEV 231
L+ + GRRICS CG Y++ K +L R+DD EE
Sbjct: 119 VLMERLTGRRICSVCGTTYHLVFNPPK-----------TPGICDKDGGELYQRADDNEET 167
Query: 232 VRERLRIYNEKSRPVEEFYRRRGKLL 257
V +RL + ++++P+ +FY +G L+
Sbjct: 168 VSKRLEVNMKQTQPLLDFYSEKGYLV 193
>pdb|1P3J|A Chain A, Adenylate Kinase From Bacillus Subtilis
Length = 217
Score = 103 bits (258), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 65/205 (31%), Positives = 101/205 (49%), Gaps = 36/205 (17%)
Query: 75 VQWVFLGCPGVGKGTYASRLSNLLGVPHIATGDLL--------------DEIVSQGKLVS 120
+ V +G PG GKGT R+ G+PHI+TGD+ + +G+LV
Sbjct: 1 MNLVLMGLPGAGKGTQGERIVEDYGIPHISTGDMFRAAMKEETPLGLEAKSYIDKGELVP 60
Query: 121 DEIIINLLSKRLEAGEAKGEAGFILDGFPRTEILEGVTD---------IDLVINLKLREE 171
DE+ I ++ +RL G+ E GF+LDGFPRT + ID VIN+++ ++
Sbjct: 61 DEVTIGIVKERL--GKDDCERGFLLDGFPRTVAQAEALEEILEEYGKPIDYVINIEVDKD 118
Query: 172 ALLAKCLGRRICSECGGNYNVACIDIKGENGNXXXXXXXXXXXXHCASKLITRSDDKEEV 231
L+ + GRRICS CG Y++ K +L R+DD EE
Sbjct: 119 VLMERLTGRRICSVCGTTYHLVFNPPK-----------TPGICDKDGGELYQRADDNEET 167
Query: 232 VRERLRIYNEKSRPVEEFYRRRGKL 256
V +RL + ++++P+ +FY +G L
Sbjct: 168 VSKRLEVNMKQTQPLLDFYSEKGYL 192
>pdb|2P3S|A Chain A, Crystal Structure Of A Thermostable Mutant Of Bacillus
Subtilis Adenylate Kinase (G214rQ199R)
Length = 217
Score = 103 bits (257), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 65/205 (31%), Positives = 101/205 (49%), Gaps = 36/205 (17%)
Query: 75 VQWVFLGCPGVGKGTYASRLSNLLGVPHIATGDLL--------------DEIVSQGKLVS 120
+ V +G PG GKGT R+ G+PHI+TGD+ + +G+LV
Sbjct: 1 MNLVLMGLPGAGKGTQGERIVEDYGIPHISTGDMFRAAMKEETPLGLEAKSYIDKGELVP 60
Query: 121 DEIIINLLSKRLEAGEAKGEAGFILDGFPRTEILEGVTD---------IDLVINLKLREE 171
DE+ I ++ +RL G+ E GF+LDGFPRT + ID VIN+++ ++
Sbjct: 61 DEVTIGIVKERL--GKDDCERGFLLDGFPRTVAQAEALEEILEEYGKPIDYVINIEVDKD 118
Query: 172 ALLAKCLGRRICSECGGNYNVACIDIKGENGNXXXXXXXXXXXXHCASKLITRSDDKEEV 231
L+ + GRRICS CG Y++ K +L R+DD EE
Sbjct: 119 VLMERLTGRRICSVCGTTYHLVFNPPK-----------TPGICDKDGGELYQRADDNEET 167
Query: 232 VRERLRIYNEKSRPVEEFYRRRGKL 256
V +RL + ++++P+ +FY +G L
Sbjct: 168 VSKRLEVNMKQTQPLLDFYSEKGYL 192
>pdb|2EU8|A Chain A, Crystal Structure Of A Thermostable Mutant Of Bacillus
Subtilis Adenylate Kinase (Q199r)
pdb|2EU8|B Chain B, Crystal Structure Of A Thermostable Mutant Of Bacillus
Subtilis Adenylate Kinase (Q199r)
Length = 216
Score = 103 bits (257), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 65/205 (31%), Positives = 101/205 (49%), Gaps = 36/205 (17%)
Query: 75 VQWVFLGCPGVGKGTYASRLSNLLGVPHIATGDLL--------------DEIVSQGKLVS 120
+ V +G PG GKGT R+ G+PHI+TGD+ + +G+LV
Sbjct: 1 MNLVLMGLPGAGKGTQGERIVEDYGIPHISTGDMFRAAMKEETPLGLEAKSYIDKGELVP 60
Query: 121 DEIIINLLSKRLEAGEAKGEAGFILDGFPRTEILEGVTD---------IDLVINLKLREE 171
DE+ I ++ +RL G+ E GF+LDGFPRT + ID VIN+++ ++
Sbjct: 61 DEVTIGIVKERL--GKDDCERGFLLDGFPRTVAQAEALEEILEEYGKPIDYVINIEVDKD 118
Query: 172 ALLAKCLGRRICSECGGNYNVACIDIKGENGNXXXXXXXXXXXXHCASKLITRSDDKEEV 231
L+ + GRRICS CG Y++ K +L R+DD EE
Sbjct: 119 VLMERLTGRRICSVCGTTYHLVFNPPK-----------TPGICDKDGGELYQRADDNEET 167
Query: 232 VRERLRIYNEKSRPVEEFYRRRGKL 256
V +RL + ++++P+ +FY +G L
Sbjct: 168 VSKRLEVNMKQTQPLLDFYSEKGYL 192
>pdb|2QAJ|A Chain A, Crystal Structure Of A Thermostable Mutant Of Bacillus
Subtilis Adenylate Kinase (Q199rG213E)
pdb|2QAJ|B Chain B, Crystal Structure Of A Thermostable Mutant Of Bacillus
Subtilis Adenylate Kinase (Q199rG213E)
Length = 217
Score = 103 bits (257), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 65/205 (31%), Positives = 101/205 (49%), Gaps = 36/205 (17%)
Query: 75 VQWVFLGCPGVGKGTYASRLSNLLGVPHIATGDLL--------------DEIVSQGKLVS 120
+ V +G PG GKGT R+ G+PHI+TGD+ + +G+LV
Sbjct: 1 MNLVLMGLPGAGKGTQGERIVEDYGIPHISTGDMFRAAMKEETPLGLEAKSYIDKGELVP 60
Query: 121 DEIIINLLSKRLEAGEAKGEAGFILDGFPRTEILEGVTD---------IDLVINLKLREE 171
DE+ I ++ +RL G+ E GF+LDGFPRT + ID VIN+++ ++
Sbjct: 61 DEVTIGIVKERL--GKDDCERGFLLDGFPRTVAQAEALEEILEEYGKPIDYVINIEVDKD 118
Query: 172 ALLAKCLGRRICSECGGNYNVACIDIKGENGNXXXXXXXXXXXXHCASKLITRSDDKEEV 231
L+ + GRRICS CG Y++ K +L R+DD EE
Sbjct: 119 VLMERLTGRRICSVCGTTYHLVFNPPK-----------TPGICDKDGGELYQRADDNEET 167
Query: 232 VRERLRIYNEKSRPVEEFYRRRGKL 256
V +RL + ++++P+ +FY +G L
Sbjct: 168 VSKRLEVNMKQTQPLLDFYSEKGYL 192
>pdb|2OSB|A Chain A, Crystal Structure Of A Thermostable Mutant Of Bacillus
Subtilis Adenylate Kinase (q16l/q199r/)
pdb|2OSB|B Chain B, Crystal Structure Of A Thermostable Mutant Of Bacillus
Subtilis Adenylate Kinase (q16l/q199r/)
Length = 216
Score = 103 bits (257), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 65/205 (31%), Positives = 101/205 (49%), Gaps = 36/205 (17%)
Query: 75 VQWVFLGCPGVGKGTYASRLSNLLGVPHIATGDLL--------------DEIVSQGKLVS 120
+ V +G PG GKGT R+ G+PHI+TGD+ + +G+LV
Sbjct: 1 MNLVLMGLPGAGKGTLGERIVEDYGIPHISTGDMFRAAMKEETPLGLEAKSYIDKGELVP 60
Query: 121 DEIIINLLSKRLEAGEAKGEAGFILDGFPRTEILEGVTD---------IDLVINLKLREE 171
DE+ I ++ +RL G+ E GF+LDGFPRT + ID VIN+++ ++
Sbjct: 61 DEVTIGIVKERL--GKDDCERGFLLDGFPRTVAQAEALEEILEEYGKPIDYVINIEVDKD 118
Query: 172 ALLAKCLGRRICSECGGNYNVACIDIKGENGNXXXXXXXXXXXXHCASKLITRSDDKEEV 231
L+ + GRRICS CG Y++ K +L R+DD EE
Sbjct: 119 VLMERLTGRRICSVCGTTYHLVFNPPK-----------TPGICDKDGGELYQRADDNEET 167
Query: 232 VRERLRIYNEKSRPVEEFYRRRGKL 256
V +RL + ++++P+ +FY +G L
Sbjct: 168 VSKRLEVNMKQTQPLLDFYSEKGYL 192
>pdb|3DL0|A Chain A, Crystal Structure Of Adenylate Kinase Variant Aklse3
pdb|3DL0|B Chain B, Crystal Structure Of Adenylate Kinase Variant Aklse3
Length = 216
Score = 103 bits (257), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 65/206 (31%), Positives = 101/206 (49%), Gaps = 36/206 (17%)
Query: 75 VQWVFLGCPGVGKGTYASRLSNLLGVPHIATGDLL--------------DEIVSQGKLVS 120
+ V +G PG GKGT R+ G+PHI+TGD+ + +G+LV
Sbjct: 1 MNLVLMGLPGAGKGTQGERIVEKYGIPHISTGDMFRAAMKEETPLGLEAKSYIDKGELVP 60
Query: 121 DEIIINLLSKRLEAGEAKGEAGFILDGFPRTEILEGVTD---------IDLVINLKLREE 171
DE+ I ++ +RL G+ E GF+LDGFPRT + ID VIN+++ ++
Sbjct: 61 DEVTIGIVKERL--GKDDCERGFLLDGFPRTVAQAEALEEILEEMGKPIDYVINIQVDKD 118
Query: 172 ALLAKCLGRRICSECGGNYNVACIDIKGENGNXXXXXXXXXXXXHCASKLITRSDDKEEV 231
L+ + GRRICS CG Y++ K +L R+DD EE
Sbjct: 119 VLMERLTGRRICSVCGTTYHLVFNPPK-----------TPGICDKDGGELYQRADDNEET 167
Query: 232 VRERLRIYNEKSRPVEEFYRRRGKLL 257
V +RL + +++ P+ +FY +G L+
Sbjct: 168 VTKRLEVNMKQTAPLLDFYDEKGYLV 193
>pdb|2C9Y|A Chain A, Structure Of Human Adenylate Kinase 2
Length = 242
Score = 102 bits (254), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 70/203 (34%), Positives = 104/203 (51%), Gaps = 36/203 (17%)
Query: 75 VQWVFLGCPGVGKGTYASRLSNLLGVPHIATGDLLDEIVSQ--------------GKLVS 120
++ V LG PG GKGT A RL+ V H+ATGD+L +V+ GKLVS
Sbjct: 17 IRAVLLGPPGAGKGTQAPRLAENFCVCHLATGDMLRAMVASGSELGKKLKATMDAGKLVS 76
Query: 121 DEIIINLLSKRLEAGEAKGEAGFILDGFPRT----EILEGVTD-----IDLVINLKLREE 171
DE+++ L+ K LE K GF+LDGFPRT E+L+ + + +D VI + +
Sbjct: 77 DEMVVELIEKNLETPLCKN--GFLLDGFPRTVRQAEMLDDLMEKRKEKLDSVIEFSIPDS 134
Query: 172 ALLAKCLGRRICSECGGNYNVACIDIKGENGNXXXXXXXXXXXXHCASKLITRSDDKEEV 231
L+ + GR I + G +Y+ E N LI RSDD E+
Sbjct: 135 LLIRRITGRLIHPKSGRSYH--------EEFNPPKEPMKDDI---TGEPLIRRSDDNEKA 183
Query: 232 VRERLRIYNEKSRPVEEFYRRRG 254
++ RL+ Y+ ++ P+ E+YR+RG
Sbjct: 184 LKIRLQAYHTQTTPLIEYYRKRG 206
>pdb|2OO7|A Chain A, Crystal Structure Of A Thermostable Mutant Of Bacillus
Subtilis Adenylate Kinase (T179iQ199R)
pdb|2OO7|B Chain B, Crystal Structure Of A Thermostable Mutant Of Bacillus
Subtilis Adenylate Kinase (T179iQ199R)
Length = 217
Score = 102 bits (253), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 65/205 (31%), Positives = 100/205 (48%), Gaps = 36/205 (17%)
Query: 75 VQWVFLGCPGVGKGTYASRLSNLLGVPHIATGDLL--------------DEIVSQGKLVS 120
+ V +G PG GKGT R+ G+PHI+TGD+ + +G+LV
Sbjct: 1 MNLVLMGLPGAGKGTQGERIVEDYGIPHISTGDMFRAAMKEETPLGLEAKSYIDKGELVP 60
Query: 121 DEIIINLLSKRLEAGEAKGEAGFILDGFPRTEILEGVTD---------IDLVINLKLREE 171
DE+ I ++ +RL G+ E GF+LDGFPRT + ID VIN+++ ++
Sbjct: 61 DEVTIGIVKERL--GKDDCERGFLLDGFPRTVAQAEALEEILEEYGKPIDYVINIEVDKD 118
Query: 172 ALLAKCLGRRICSECGGNYNVACIDIKGENGNXXXXXXXXXXXXHCASKLITRSDDKEEV 231
L+ + GRRICS CG Y++ K +L R+DD EE
Sbjct: 119 VLMERLTGRRICSVCGTTYHLVFNPPK-----------TPGICDKDGGELYQRADDNEET 167
Query: 232 VRERLRIYNEKSRPVEEFYRRRGKL 256
V +RL + ++ +P+ +FY +G L
Sbjct: 168 VSKRLEVNMKQIQPLLDFYSEKGYL 192
>pdb|3FB4|A Chain A, Crystal Structure Of Adenylate Kinase From Marinibacillus
Marinus
Length = 216
Score = 101 bits (252), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 65/211 (30%), Positives = 101/211 (47%), Gaps = 46/211 (21%)
Query: 78 VFLGCPGVGKGTYASRLSNLLGVPHIATGDLL--------------DEIVSQGKLVSDEI 123
V +G PG GKGT A ++ +PHI+TGD+ + QG LV DE+
Sbjct: 4 VLMGLPGAGKGTQAEQIIEKYEIPHISTGDMFRAAIKNGTELGLKAKSFMDQGNLVPDEV 63
Query: 124 IINLLSKRLEAGEAKGEAGFILDGFPRTEILEGVTD---------IDLVINLKLREEALL 174
I ++ +RL + + GF+LDGFPRT D +D V+N+K+ +E L+
Sbjct: 64 TIGIVHERLSKDDC--QKGFLLDGFPRTVAQADALDSLLTDLGKKLDYVLNIKVEQEELM 121
Query: 175 AKCLGRRICSECGGNYNV-----ACIDIKGENGNXXXXXXXXXXXXHCASKLITRSDDKE 229
+ GR IC CG Y+ A I ++G +L R DDK
Sbjct: 122 KRLTGRWICKTCGATYHTIFNPPAVEGICDKDG----------------GELYQRIDDKP 165
Query: 230 EVVRERLRIYNEKSRPVEEFYRRRGKLLEFD 260
E V+ RL + ++++P+ +FY ++G L + D
Sbjct: 166 ETVKNRLDVNMKQTQPLLDFYSQKGVLKDID 196
>pdb|3DKV|A Chain A, Crystal Structure Of Adenylate Kinase Variant Aklse1
Length = 217
Score = 100 bits (249), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 64/196 (32%), Positives = 94/196 (47%), Gaps = 36/196 (18%)
Query: 78 VFLGCPGVGKGTYASRLSNLLGVPHIATGDLL--------------DEIVSQGKLVSDEI 123
V +G PG GKGT A R+ G+PHI+TGD+ + +G+LV DE+
Sbjct: 4 VLMGLPGAGKGTQAERIVEKYGIPHISTGDMFRAAMKEETPLGLEAKSYIDKGELVPDEV 63
Query: 124 IINLLSKRLEAGEAKGEAGFILDGFPRTEILEGVT---------DIDLVINLKLREEALL 174
I ++ +RL + E GF+LDGFPRT ID VIN+++ +E L+
Sbjct: 64 TIGIVRERLSKSDC--ERGFLLDGFPRTVAQAEALEEILEEMGRPIDYVINIQVDKEELM 121
Query: 175 AKCLGRRICSECGGNYNVACIDIKGENGNXXXXXXXXXXXXHCASKLITRSDDKEEVVRE 234
+ GRRICS CG Y++ K +L R+DD EE V +
Sbjct: 122 ERLTGRRICSVCGTTYHLVFNPPKTPG-----------ICDKDGGELYQRADDNEETVTK 170
Query: 235 RLRIYNEKSRPVEEFY 250
RL + +++ P+ FY
Sbjct: 171 RLEVNMKQTAPLLAFY 186
>pdb|2RGX|A Chain A, Crystal Structure Of Adenylate Kinase From Aquifex
Aeolicus In Complex With Ap5a
pdb|2RH5|A Chain A, Structure Of Apo Adenylate Kinase From Aquifex Aeolicus
pdb|2RH5|C Chain C, Structure Of Apo Adenylate Kinase From Aquifex Aeolicus
pdb|2RH5|B Chain B, Structure Of Apo Adenylate Kinase From Aquifex Aeolicus
pdb|3SR0|A Chain A, Crystal Structure Of The Phosphoryl Transfer Transition
State Mimic In The Adenylate Kinase: AdpALF4AMP IN THE
ACTIVE SITE
pdb|3SR0|B Chain B, Crystal Structure Of The Phosphoryl Transfer Transition
State Mimic In The Adenylate Kinase: AdpALF4AMP IN THE
ACTIVE SITE
Length = 206
Score = 99.8 bits (247), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 70/222 (31%), Positives = 107/222 (48%), Gaps = 46/222 (20%)
Query: 78 VFLGCPGVGKGTYASRLSNLLGVPHIATGDLLDEIVSQ--------------GKLVSDEI 123
VFLG PG GKGT A RL+ G HI+TGD+L E V + G+LV D++
Sbjct: 4 VFLGPPGAGKGTQAKRLAKEKGFVHISTGDILREAVQKGTPLGKKAKEYMERGELVPDDL 63
Query: 124 IINLLSKRLEAGEAKGEAGFILDGFPRT--------EILEGV-TDIDLVINLKLREEALL 174
II L+ + I DGFPRT E+LE +D V+ ++ +E ++
Sbjct: 64 IIALIEEVFPK-----HGNVIFDGFPRTVKQAEALDEMLEKKGLKVDHVLLFEVPDEVVI 118
Query: 175 AKCLGRRICSECGGNYNVACIDIKGENGNXXXXXXXXXXXXHCASKLITRSDDKEEVVRE 234
+ GRRI E G Y+V K+I R DDK EV+++
Sbjct: 119 ERLSGRRINPETGEVYHVKY------------------NPPPPGVKVIQREDDKPEVIKK 160
Query: 235 RLRIYNEKSRPVEEFYRRRGKLLEFDLPGGIPESWPKLLQAL 276
RL +Y E++ P+ E+Y+++G L D + E + ++L+ +
Sbjct: 161 RLEVYREQTAPLIEYYKKKGILRIIDASKPVEEVYRQVLEVI 202
>pdb|1AKE|A Chain A, Structure Of The Complex Between Adenylate Kinase From
Escherichia Coli And The Inhibitor Ap5a Refined At 1.9
Angstroms Resolution: A Model For A Catalytic Transition
State
pdb|1AKE|B Chain B, Structure Of The Complex Between Adenylate Kinase From
Escherichia Coli And The Inhibitor Ap5a Refined At 1.9
Angstroms Resolution: A Model For A Catalytic Transition
State
pdb|1ANK|A Chain A, The Closed Conformation Of A Highly Flexible Protein: The
Structure Of E. Cloi Adenylate Kinase With Bound Amp And
Amppnp
pdb|1ANK|B Chain B, The Closed Conformation Of A Highly Flexible Protein: The
Structure Of E. Cloi Adenylate Kinase With Bound Amp And
Amppnp
pdb|4AKE|A Chain A, Adenylate Kinase
pdb|4AKE|B Chain B, Adenylate Kinase
pdb|2ECK|A Chain A, Structure Of Phosphotransferase
pdb|2ECK|B Chain B, Structure Of Phosphotransferase
pdb|3HPQ|A Chain A, Crystal Structure Of Wild-Type Adenylate Kinase From E.
Coli, In Complex With Ap5a
pdb|3HPQ|B Chain B, Crystal Structure Of Wild-Type Adenylate Kinase From E.
Coli, In Complex With Ap5a
Length = 214
Score = 99.4 bits (246), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 61/197 (30%), Positives = 102/197 (51%), Gaps = 32/197 (16%)
Query: 75 VQWVFLGCPGVGKGTYASRLSNLLGVPHIATGDLL--------------DEIVSQGKLVS 120
++ + LG PG GKGT A + G+P I+TGD+L +I+ GKLV+
Sbjct: 1 MRIILLGAPGAGKGTQAQFIMEKYGIPQISTGDMLRAAVKSGSELGKQAKDIMDAGKLVT 60
Query: 121 DEIIINLLSKRLEAGEAKGEAGFILDGFPRT-----EILEGVTDIDLVINLKLREEALLA 175
DE++I L+ +R+ + + GF+LDGFPRT + E ++D V+ + +E ++
Sbjct: 61 DELVIALVKERIAQEDCRN--GFLLDGFPRTIPQADAMKEAGINVDYVLEFDVPDELIVD 118
Query: 176 KCLGRRICSECGGNYNVACIDIKGENGNXXXXXXXXXXXXHCASKLITRSDDKEEVVRER 235
+ +GRR+ + G Y+V K E + +L TR DD+EE VR+R
Sbjct: 119 RIVGRRVHAPSGRVYHVKFNPPKVEGKDDV-----------TGEELTTRKDDQEETVRKR 167
Query: 236 LRIYNEKSRPVEEFYRR 252
L Y++ + P+ +Y +
Sbjct: 168 LVEYHQMTAPLIGYYSK 184
>pdb|1AK2|A Chain A, Adenylate Kinase Isoenzyme-2
pdb|2AK2|A Chain A, Adenylate Kinase Isoenzyme-2
Length = 233
Score = 99.0 bits (245), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 68/203 (33%), Positives = 102/203 (50%), Gaps = 36/203 (17%)
Query: 75 VQWVFLGCPGVGKGTYASRLSNLLGVPHIATGDLLDEIVSQ--------------GKLVS 120
V+ V LG PG GKGT A +L+ V H+ATGD+L +V+ GKLVS
Sbjct: 17 VRAVLLGPPGAGKGTQAPKLAKNFCVCHLATGDMLRAMVASGSELGKKLKATMDAGKLVS 76
Query: 121 DEIIINLLSKRLEAGEAKGEAGFILDGFPRT----EILEGVTD-----IDLVINLKLREE 171
DE+++ L+ K LE K GF+LDGFPRT E+L+ + + +D VI + +
Sbjct: 77 DEMVLELIEKNLETPPCKN--GFLLDGFPRTVRQAEMLDDLMEKRKEKLDSVIEFSIPDS 134
Query: 172 ALLAKCLGRRICSECGGNYNVACIDIKGENGNXXXXXXXXXXXXHCASKLITRSDDKEEV 231
L+ + GR I + G +Y+ E N LI RSDD ++
Sbjct: 135 LLIRRITGRLIHPQSGRSYH--------EEFNPPKEPMKDDI---TGEPLIRRSDDNKKA 183
Query: 232 VRERLRIYNEKSRPVEEFYRRRG 254
++ RL Y+ ++ P+ E+Y +RG
Sbjct: 184 LKIRLEAYHTQTTPLVEYYSKRG 206
>pdb|3HPR|A Chain A, Crystal Structure Of V148g Adenylate Kinase From E. Coli,
In Complex With Ap5a
pdb|3HPR|B Chain B, Crystal Structure Of V148g Adenylate Kinase From E. Coli,
In Complex With Ap5a
Length = 214
Score = 99.0 bits (245), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 61/197 (30%), Positives = 102/197 (51%), Gaps = 32/197 (16%)
Query: 75 VQWVFLGCPGVGKGTYASRLSNLLGVPHIATGDLL--------------DEIVSQGKLVS 120
++ + LG PG GKGT A + G+P I+TGD+L +I+ GKLV+
Sbjct: 1 MRIILLGAPGAGKGTQAQFIMEKYGIPQISTGDMLRAAVKSGSELGKQAKDIMDAGKLVT 60
Query: 121 DEIIINLLSKRLEAGEAKGEAGFILDGFPRT-----EILEGVTDIDLVINLKLREEALLA 175
DE++I L+ +R+ + + GF+LDGFPRT + E ++D V+ + +E ++
Sbjct: 61 DELVIALVKERIAQEDCRN--GFLLDGFPRTIPQADAMKEAGINVDYVLEFDVPDELIVD 118
Query: 176 KCLGRRICSECGGNYNVACIDIKGENGNXXXXXXXXXXXXHCASKLITRSDDKEEVVRER 235
+ +GRR+ + G Y+V K E + +L TR DD+EE VR+R
Sbjct: 119 RIVGRRVHAPSGRVYHVKFNPPKVEGKDDG-----------TGEELTTRKDDQEETVRKR 167
Query: 236 LRIYNEKSRPVEEFYRR 252
L Y++ + P+ +Y +
Sbjct: 168 LVEYHQMTAPLIGYYSK 184
>pdb|1ZD8|A Chain A, Structure Of Human Adenylate Kinase 3 Like 1
Length = 227
Score = 98.6 bits (244), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 74/241 (30%), Positives = 111/241 (46%), Gaps = 57/241 (23%)
Query: 78 VFLGCPGVGKGTYASRLSNLLGVPHIATGDLLDE--------------IVSQGKLVSDEI 123
V +G PG GKGT +SR++ + H+++GDLL + + QGKL+ D++
Sbjct: 11 VIMGAPGSGKGTVSSRITTHFELKHLSSGDLLRDNMLRGTEIGVLAKAFIDQGKLIPDDV 70
Query: 124 IINLLSKRLEAGEAKG--EAGFILDGFPRT----EILEGVTDIDLVINLKLREEALLAKC 177
+ RL E K + ++LDGFPRT E L+ ID VINL + E + +
Sbjct: 71 MT-----RLALHELKNLTQYSWLLDGFPRTLPQAEALDRAYQIDTVINLNVPFEVIKQRL 125
Query: 178 LGRRICSECGGNYN--------VACIDIKGENGNXXXXXXXXXXXXHCASKLITRSDDKE 229
R I G YN V D+ GE LI R DDK
Sbjct: 126 TARWIHPASGRVYNIEFNPPKTVGIDDLTGE-------------------PLIQREDDKP 166
Query: 230 EVVRERLRIYNEKSRPVEEFYRRRGKLLEFDLPGGIPES--WPKLLQALNLEDPEDKQSA 287
E V +RL+ Y ++++PV E+Y+++G L F G + WP + L + P+ Q A
Sbjct: 167 ETVIKRLKAYEDQTKPVLEYYQKKGVLETF---SGTETNKIWPYVYAFLQTKVPQRSQKA 223
Query: 288 A 288
+
Sbjct: 224 S 224
>pdb|1AKY|A Chain A, High-Resolution Structures Of Adenylate Kinase From Yeast
Ligated With Inhibitor Ap5a, Showing The Pathway Of
Phosphoryl Transfer
pdb|2AKY|A Chain A, High-Resolution Structures Of Adenylate Kinase From Yeast
Ligated With Inhibitor Ap5a, Showing The Pathway Of
Phosphoryl Transfer
Length = 220
Score = 97.8 bits (242), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 69/229 (30%), Positives = 105/229 (45%), Gaps = 43/229 (18%)
Query: 75 VQWVFLGCPGVGKGTYASRLSNLLGVPHIATGDLL--------------DEIVSQGKLVS 120
++ V +G PG GKGT A L H+ATGD+L +I+ QG LVS
Sbjct: 5 IRMVLIGPPGAGKGTQAPNLQERFHAAHLATGDMLRSQIAKGTQLGLEAKKIMDQGGLVS 64
Query: 121 DEIIINLLSKRLEAGEAKGEAGFILDGFPRT---------EILEGVTDIDLVINLKLREE 171
D+I++N++ L A + GFILDGFPRT + E T ++ I LK+ +E
Sbjct: 65 DDIMVNMIKDELTNNPA-CKNGFILDGFPRTIPQAEKLDQMLKEQGTPLEKAIELKVDDE 123
Query: 172 ALLAKCLGRRICSECGGNY----NVACIDIKGENGNXXXXXXXXXXXXHCASKLITRSDD 227
L+A+ GR I G +Y N D+K + L+ RSDD
Sbjct: 124 LLVARITGRLIHPASGRSYHKIFNPPKEDMKDDV---------------TGEALVQRSDD 168
Query: 228 KEEVVRERLRIYNEKSRPVEEFYRRRGKLLEFDLPGGIPESWPKLLQAL 276
+ +++RL Y+ ++ P+ +FY++ G D W +L L
Sbjct: 169 NADALKKRLAAYHAQTEPIVDFYKKTGIWAGVDASQPPATVWADILNKL 217
>pdb|3AKY|A Chain A, Stability, Activity And Structure Of Adenylate Kinase
Mutants
Length = 220
Score = 97.4 bits (241), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 65/207 (31%), Positives = 100/207 (48%), Gaps = 43/207 (20%)
Query: 75 VQWVFLGCPGVGKGTYASRLSNLLGVPHIATGDLL--------------DEIVSQGKLVS 120
++ V +G PG GKGT A L H+ATGD+L +I+ QG LVS
Sbjct: 5 IRMVLIGPPGAGKGTQAPNLQERFHAAHLATGDMLRSQIAKGTQLGLEAKKIMDQGGLVS 64
Query: 121 DEIIINLLSKRLEAGEAKGEAGFILDGFPRT---------EILEGVTDIDLVINLKLREE 171
D+I++N++ L A + GFILDGFPRT + E T ++ I LK+ +E
Sbjct: 65 DDIMVNMIKDELTNNPA-CKNGFILDGFPRTIPQAEKLDQMLKEQGTPLEKAIELKVDDE 123
Query: 172 ALLAKCLGRRICSECGGNY----NVACIDIKGENGNXXXXXXXXXXXXHCASKLITRSDD 227
L+A+ GR I G +Y N D+K + L+ RSDD
Sbjct: 124 LLVARITGRLIHPASGRSYHKIFNPPKEDMKDDV---------------TGEALVQRSDD 168
Query: 228 KEEVVRERLRIYNEKSRPVEEFYRRRG 254
+ +++RL Y+ ++ P+ +FY++ G
Sbjct: 169 NADALKKRLAAYHAQTEPIVDFYKKTG 195
>pdb|1E4V|A Chain A, Mutant G10v Of Adenylate Kinase From E. Coli, Modified In
The Gly-Loop
pdb|1E4V|B Chain B, Mutant G10v Of Adenylate Kinase From E. Coli, Modified In
The Gly-Loop
Length = 214
Score = 95.9 bits (237), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 60/197 (30%), Positives = 101/197 (51%), Gaps = 32/197 (16%)
Query: 75 VQWVFLGCPGVGKGTYASRLSNLLGVPHIATGDLL--------------DEIVSQGKLVS 120
++ + LG P GKGT A + G+P I+TGD+L +I+ GKLV+
Sbjct: 1 MRIILLGAPVAGKGTQAQFIMEKYGIPQISTGDMLRAAVKSGSELGKQAKDIMDAGKLVT 60
Query: 121 DEIIINLLSKRLEAGEAKGEAGFILDGFPRT-----EILEGVTDIDLVINLKLREEALLA 175
DE++I L+ +R+ + + GF+LDGFPRT + E ++D V+ + +E ++
Sbjct: 61 DELVIALVKERIAQEDCRN--GFLLDGFPRTIPQADAMKEAGINVDYVLEFDVPDELIVD 118
Query: 176 KCLGRRICSECGGNYNVACIDIKGENGNXXXXXXXXXXXXHCASKLITRSDDKEEVVRER 235
+ +GRR+ + G Y+V K E + +L TR DD+EE VR+R
Sbjct: 119 RIVGRRVHAPSGRVYHVKFNPPKVEGKDDV-----------TGEELTTRKDDQEETVRKR 167
Query: 236 LRIYNEKSRPVEEFYRR 252
L Y++ + P+ +Y +
Sbjct: 168 LVEYHQMTAPLIGYYSK 184
>pdb|1S3G|A Chain A, Crystal Structure Of Adenylate Kinase From Bacillus
Globisporus
Length = 217
Score = 94.7 bits (234), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 63/209 (30%), Positives = 100/209 (47%), Gaps = 36/209 (17%)
Query: 75 VQWVFLGCPGVGKGTYASRLSNLLGVPHIATGDLL--------------DEIVSQGKLVS 120
+ V +G PG GKGT A R+ G PHI+TGD+ + QG LV
Sbjct: 1 MNIVLMGLPGAGKGTQADRIVEKYGTPHISTGDMFRAAIQEGTELGVKAKSFMDQGALVP 60
Query: 121 DEIIINLLSKRLEAGEAKGEAGFILDGFPRT----EILEGVT-----DIDLVINLKLREE 171
DE+ I ++ +RL + + GF+LDGFPRT E L+ + I+ V+N+++ +E
Sbjct: 61 DEVTIGIVRERLSKSDC--DNGFLLDGFPRTVPQAEALDQLLADMGRKIEHVLNIQVEKE 118
Query: 172 ALLAKCLGRRICSECGGNYNVACIDIKGENGNXXXXXXXXXXXXHCASKLITRSDDKEEV 231
L+A+ GRRIC CG +Y++ + E +L R+DD +
Sbjct: 119 ELIARLTGRRICKVCGTSYHLLFNPPQVEG-----------KCDKDGGELYQRADDNPDT 167
Query: 232 VRERLRIYNEKSRPVEEFYRRRGKLLEFD 260
V RL + ++ P+ FY + L+ +
Sbjct: 168 VTNRLEVNMNQTAPLLAFYDSKEVLVNIN 196
>pdb|2AK3|A Chain A, The Three-Dimensional Structure Of The Complex Between
Mitochondrial Matrix Adenylate Kinase And Its Substrate
Amp At 1.85 Angstroms Resolution
pdb|2AK3|B Chain B, The Three-Dimensional Structure Of The Complex Between
Mitochondrial Matrix Adenylate Kinase And Its Substrate
Amp At 1.85 Angstroms Resolution
Length = 226
Score = 92.8 bits (229), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 66/230 (28%), Positives = 105/230 (45%), Gaps = 37/230 (16%)
Query: 80 LGCPGVGKGTYASRLSNLLGVPHIATGDLLDE--------------IVSQGKLVSDEIII 125
+G PG GKGT +SR++ + H+++GDLL + + QGKL+ D+++
Sbjct: 12 MGAPGSGKGTVSSRITKHFELKHLSSGDLLRDNMLRGTEIGVLAKTFIDQGKLIPDDVMT 71
Query: 126 NLLSKRLEAGEAKGEAGFILDGFPRT----EILEGVTDIDLVINLKLREEALLAKCLGRR 181
L+ L+ + ++LDGFPRT E L+ ID VINL + E + + R
Sbjct: 72 RLVLHELKN---LTQYNWLLDGFPRTLPQAEALDRAYQIDTVINLNVPFEVIKQRLTARW 128
Query: 182 ICSECGGNYNVACIDIKGENGNXXXXXXXXXXXXHCASKLITRSDDKEEVVRERLRIYNE 241
I G YN+ K + L+ R DD+ E V +RL+ Y
Sbjct: 129 IHPGSGRVYNIEFNPPKTMGIDDL-----------TGEPLVQREDDRPETVVKRLKAYEA 177
Query: 242 KSRPVEEFYRRRGKLLEFDLPGGIPES--WPKLLQALNLEDPEDKQSAAA 289
++ PV E+YR++G L F G + WP + L + P+ Q +
Sbjct: 178 QTEPVLEYYRKKGVLETF---SGTETNKIWPHVYAFLQTKLPQRSQETSV 224
>pdb|3GMT|A Chain A, Crystal Structure Of Adenylate Kinase From Burkholderia
Pseu
pdb|3GMT|B Chain B, Crystal Structure Of Adenylate Kinase From Burkholderia
Pseu
Length = 230
Score = 92.4 bits (228), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 64/199 (32%), Positives = 93/199 (46%), Gaps = 35/199 (17%)
Query: 78 VFLGCPGVGKGTYASRLSNLLGVPHIATGDLLDEIVS--------------QGKLVSDEI 123
+ LG PG GKGT A+ + G+P I+TGD L V +GKLV D +
Sbjct: 12 ILLGAPGAGKGTQANFIKEKFGIPQISTGDXLRAAVKAGTPLGVEAKTYXDEGKLVPDSL 71
Query: 124 IINLLSKRLEAGEAKGEAGFILDGFPRT-----EILEGVTDIDLVINLKLREEALLAKCL 178
II L+ +RL+ EA G++ DGFPRT E ID V+ + + ++ +
Sbjct: 72 IIGLVKERLK--EADCANGYLFDGFPRTIAQADAXKEAGVAIDYVLEIDVPFSEIIERXS 129
Query: 179 GRRICSECGGNYNVACIDIKGENGNXXXXXXXXXXXXHCASKLITRSDDKEEVVRERLRI 238
GRR G Y+V K E + L+ R DDKEE V++RL +
Sbjct: 130 GRRTHPASGRTYHVKFNPPKVEGKDDV-----------TGEPLVQRDDDKEETVKKRLDV 178
Query: 239 YNEKSRPVEEFY---RRRG 254
Y +++P+ +Y RRG
Sbjct: 179 YEAQTKPLITYYGDWARRG 197
>pdb|1E4Y|A Chain A, Mutant P9l Of Adenylate Kinase From E. Coli, Modified In
The Gly-Loop
pdb|1E4Y|B Chain B, Mutant P9l Of Adenylate Kinase From E. Coli, Modified In
The Gly-Loop
Length = 214
Score = 91.3 bits (225), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 59/197 (29%), Positives = 100/197 (50%), Gaps = 32/197 (16%)
Query: 75 VQWVFLGCPGVGKGTYASRLSNLLGVPHIATGDLL--------------DEIVSQGKLVS 120
++ + LG GKGT A + G+P I+TGD+L +I+ GKLV+
Sbjct: 1 MRIILLGALVAGKGTQAQFIMEKYGIPQISTGDMLRAAVKSGSELGKQAKDIMDAGKLVT 60
Query: 121 DEIIINLLSKRLEAGEAKGEAGFILDGFPRT-----EILEGVTDIDLVINLKLREEALLA 175
DE++I L+ +R+ + + GF+LDGFPRT + E ++D V+ + +E ++
Sbjct: 61 DELVIALVKERIAQEDCRN--GFLLDGFPRTIPQADAMKEAGINVDYVLEFDVPDELIVD 118
Query: 176 KCLGRRICSECGGNYNVACIDIKGENGNXXXXXXXXXXXXHCASKLITRSDDKEEVVRER 235
+ +GRR+ + G Y+V K E + +L TR DD+EE VR+R
Sbjct: 119 RIVGRRVHAPSGRVYHVKFNPPKVEGKDDV-----------TGEELTTRKDDQEETVRKR 167
Query: 236 LRIYNEKSRPVEEFYRR 252
L Y++ + P+ +Y +
Sbjct: 168 LVEYHQMTAPLIGYYSK 184
>pdb|1DVR|A Chain A, Structure Of A Mutant Adenylate Kinase Ligated With An
Atp- Analogue Showing Domain Closure Over Atp
pdb|1DVR|B Chain B, Structure Of A Mutant Adenylate Kinase Ligated With An
Atp- Analogue Showing Domain Closure Over Atp
Length = 220
Score = 90.5 bits (223), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 67/229 (29%), Positives = 103/229 (44%), Gaps = 43/229 (18%)
Query: 75 VQWVFLGCPGVGKGTYASRLSNLLGVPHIATGDLL--------------DEIVSQGKLVS 120
++ V +G PG GKGT A L H+ATGD+L +I+ QG LVS
Sbjct: 5 IRMVLIGPPGAGKGTQAPNLQERFHAAHLATGDMLRSQIAKGTQLGLEAKKIMDQGGLVS 64
Query: 121 DEIIINLLSKRLEAGEAKGEAGFILDGFPRT---------EILEGVTDIDLVINLKLREE 171
D+I++N++ L A + GFIL GFPRT + E T ++ I LK+ +E
Sbjct: 65 DDIMVNMIKDELTNNPA-CKNGFILVGFPRTIPQAEKLDQMLKEQGTPLEKAIELKVDDE 123
Query: 172 ALLAKCLGRRICSECGGNY----NVACIDIKGENGNXXXXXXXXXXXXHCASKLITRSDD 227
L+A+ GR I G +Y N D+K + L+ SDD
Sbjct: 124 LLVARITGRLIHPASGRSYHKIFNPPKEDMKDDV---------------TGEALVQISDD 168
Query: 228 KEEVVRERLRIYNEKSRPVEEFYRRRGKLLEFDLPGGIPESWPKLLQAL 276
+ +++RL Y+ ++ P+ +FY++ G D W +L L
Sbjct: 169 NADALKKRLAAYHAQTEPIVDFYKKTGIWAGVDASQPPATVWADILNKL 217
>pdb|3TLX|A Chain A, Crystal Structure Of Pf10_0086, Adenylate Kinase From
Plasmodium Falciparum
pdb|3TLX|B Chain B, Crystal Structure Of Pf10_0086, Adenylate Kinase From
Plasmodium Falciparum
pdb|3TLX|C Chain C, Crystal Structure Of Pf10_0086, Adenylate Kinase From
Plasmodium Falciparum
pdb|3TLX|D Chain D, Crystal Structure Of Pf10_0086, Adenylate Kinase From
Plasmodium Falciparum
Length = 243
Score = 86.3 bits (212), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 59/212 (27%), Positives = 102/212 (48%), Gaps = 44/212 (20%)
Query: 76 QWVFLGCPGVGKGTYASRLSNLLGVPHIATGDLLDE--------------IVSQGKLVSD 121
+++FLG PG GKGT + L H++TGDLL E I+++GKLV D
Sbjct: 31 RYIFLGAPGSGKGTQSLNLKKSHCYCHLSTGDLLREAAEKKTELGLKIKNIINEGKLVDD 90
Query: 122 EIIINLLSKRLEAGEAKGEAGFILDGFPRTE---------ILEGVTDIDLVINLKLREEA 172
+++++L+ ++L+ + K GFILDG+PR + + T +D V + +E
Sbjct: 91 QMVLSLVDEKLKTPQCK--KGFILDGYPRNVKQAEDLNKLLQKNQTKLDGVFYFNVPDEV 148
Query: 173 LLAKCLGRRICSECGGNY----NVACIDIKGENGNXXXXXXXXXXXXHCASKLITRSDDK 228
L+ + GR I G Y N + + + N LI R DD
Sbjct: 149 LVNRISGRLIHKPSGRIYHKIFNPPKVPFRDDVTN---------------EPLIQREDDN 193
Query: 229 EEVVRERLRIYNEKSRPVEEFYRRRGKLLEFD 260
E+V+++RL ++ ++ P+ +Y+ + L+ D
Sbjct: 194 EDVLKKRLTVFKSETSPLISYYKNKNLLINLD 225
>pdb|2AR7|A Chain A, Crystal Structure Of Human Adenylate Kinase 4, Ak4
pdb|2AR7|B Chain B, Crystal Structure Of Human Adenylate Kinase 4, Ak4
pdb|2BBW|A Chain A, Crystal Structure Of Human Adenylate Kinase 4 (Ak4) In
Complex With Diguanosine Pentaphosphate
pdb|2BBW|B Chain B, Crystal Structure Of Human Adenylate Kinase 4 (Ak4) In
Complex With Diguanosine Pentaphosphate
Length = 246
Score = 85.9 bits (211), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 65/208 (31%), Positives = 95/208 (45%), Gaps = 48/208 (23%)
Query: 78 VFLGCPGVGKGTYASRLSNLLGVPHIATGDLLDE--------------IVSQGKLVSDEI 123
V LG PG GKGT R++ G+ H+++G L E + + LV D +
Sbjct: 31 VILGPPGSGKGTVCQRIAQNFGLQHLSSGHFLRENIKASTEVGEMAKQYIEKSLLVPDHV 90
Query: 124 IINLLSKRLEAGEAKGEAGFILDGFPRT----EILEGVTDIDLVINLKLREEALLAKCLG 179
I L+ LE +G+ ++LDGFPRT E L+ + ++DLVI+L + E L +
Sbjct: 91 ITRLMMSELE--NRRGQH-WLLDGFPRTLGQAEALDKICEVDLVISLNIPFETLKDRLSR 147
Query: 180 RRICSECGGNYNV--------ACIDIKGENGNXXXXXXXXXXXXHCASKLITRSDDKEEV 231
R I G YN+ D+ GE L+ + DDK E
Sbjct: 148 RWIHPPSGRVYNLDFNPPHVHGIDDVTGE-------------------PLVQQEDDKPEA 188
Query: 232 VRERLRIYNEKSRPVEEFYRRRGKLLEF 259
V RLR Y + ++PV E Y+ RG L +F
Sbjct: 189 VAARLRQYKDVAKPVIELYKSRGVLHQF 216
>pdb|3NDP|A Chain A, Crystal Structure Of Human Ak4(L171p)
pdb|3NDP|B Chain B, Crystal Structure Of Human Ak4(L171p)
Length = 231
Score = 83.6 bits (205), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 63/208 (30%), Positives = 92/208 (44%), Gaps = 48/208 (23%)
Query: 78 VFLGCPGVGKGTYASRLSNLLGVPHIATGDLLDE--------------IVSQGKLVSDEI 123
V LG PG GKGT R++ G+ H+++G L E + + LV D +
Sbjct: 9 VILGPPGSGKGTVCQRIAQNFGLQHLSSGHFLRENIKASTEVGEMAKQYIEKSLLVPDHV 68
Query: 124 IINLLSKRLEAGEAKGEAGFILDGFPRT----EILEGVTDIDLVINLKLREEALLAKCLG 179
I L+ LE + ++LDGFPRT E L+ + ++DLVI+L + E L +
Sbjct: 69 ITRLMMSELENRRGQH---WLLDGFPRTLGQAEALDKICEVDLVISLNIPFETLKDRLSR 125
Query: 180 RRICSECGGNYNV--------ACIDIKGENGNXXXXXXXXXXXXHCASKLITRSDDKEEV 231
R I G YN+ D+ GE L+ + DDK E
Sbjct: 126 RWIHPPSGRVYNLDFNPPHVHGIDDVTGE-------------------PLVQQEDDKPEA 166
Query: 232 VRERLRIYNEKSRPVEEFYRRRGKLLEF 259
V R R Y + ++PV E Y+ RG L +F
Sbjct: 167 VAARPRQYKDVAKPVIELYKSRGVLHQF 194
>pdb|2CDN|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Adenylate
Kinase Complexed With Two Molecules Of Adp And Mg
Length = 201
Score = 81.6 bits (200), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 64/226 (28%), Positives = 102/226 (45%), Gaps = 69/226 (30%)
Query: 74 HVQWVFLGCPGVGKGTYASRLSNLLGVPHIATGDLLDEIVSQ--------------GKLV 119
H++ + LG PG GKGT A +L+ LG+P I+TG+L + + G LV
Sbjct: 20 HMRVLLLGPPGAGKGTQAVKLAEKLGIPQISTGELFRRNIEEGTKLGVEAKRYLDAGDLV 79
Query: 120 SDEIIINLLSKRLEAGEAKGEAGFILDGFPRT--------EILEGV-TDIDLVINLKLRE 170
++ L+ RL +A GFILDG+PR+ E+LE TDID V+ ++ E
Sbjct: 80 PSDLTNELVDDRLNNPDAAN--GFILDGYPRSVEQAKALHEMLERRGTDIDAVLEFRVSE 137
Query: 171 EALLAKCLGRRICSECGGNYNVACIDIKGENGNXXXXXXXXXXXXHCASKLITRSDDKEE 230
E LL + GR R+DD ++
Sbjct: 138 EVLLERLKGR------------------------------------------GRADDTDD 155
Query: 231 VVRERLRIYNEKSRPVEEFYRRRGKLLEFDLPGGIPESWPKLLQAL 276
V+ R+++Y +++ P+ E+Y R +L D G + E + + L+AL
Sbjct: 156 VILNRMKVYRDETAPLLEYY--RDQLKTVDAVGTMDEVFARALRAL 199
>pdb|1P4S|A Chain A, Solution Structure Of Mycobacterium Tuberculosis Adenylate
Kinase
Length = 181
Score = 78.2 bits (191), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 63/225 (28%), Positives = 101/225 (44%), Gaps = 69/225 (30%)
Query: 75 VQWVFLGCPGVGKGTYASRLSNLLGVPHIATGDLLDEIVSQ--------------GKLVS 120
++ + LG PG GKGT A +L+ LG+P I+TG+L + + G LV
Sbjct: 1 MRVLLLGPPGAGKGTQAVKLAEKLGIPQISTGELFRRNIEEGTKLGVEAKRYLDAGDLVP 60
Query: 121 DEIIINLLSKRLEAGEAKGEAGFILDGFPRT--------EILEGV-TDIDLVINLKLREE 171
++ L+ RL +A GFILDG+PR+ E+LE TDID V+ ++ EE
Sbjct: 61 SDLTNELVDDRLNNPDAAN--GFILDGYPRSVEQAKALHEMLERRGTDIDAVLEFRVSEE 118
Query: 172 ALLAKCLGRRICSECGGNYNVACIDIKGENGNXXXXXXXXXXXXHCASKLITRSDDKEEV 231
LL + GR R+DD ++V
Sbjct: 119 VLLERLKGR------------------------------------------GRADDTDDV 136
Query: 232 VRERLRIYNEKSRPVEEFYRRRGKLLEFDLPGGIPESWPKLLQAL 276
+ R+++Y +++ P+ E+Y R +L D G + E + + L+AL
Sbjct: 137 ILNRMKVYRDETAPLLEYY--RDQLKTVDAVGTMDEVFARALRAL 179
>pdb|1ZAK|A Chain A, Adenylate Kinase From Maize In Complex With The Inhibitor
P1,P5-Bis(Adenosine-5'-)pentaphosphate (Ap5a)
pdb|1ZAK|B Chain B, Adenylate Kinase From Maize In Complex With The Inhibitor
P1,P5-Bis(Adenosine-5'-)pentaphosphate (Ap5a)
Length = 222
Score = 73.2 bits (178), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 56/182 (30%), Positives = 85/182 (46%), Gaps = 39/182 (21%)
Query: 81 GCPGVGKGTYASRLSNLLGVPHIATGDLL--------------DEIVSQGKLVSDEIIIN 126
G P GKGT + + HI+ GDLL E + +G+LV DEI++N
Sbjct: 12 GAPASGKGTQCELIKTKYQLAHISAGDLLRAEIAAGSENGKRAKEFMEKGQLVPDEIVVN 71
Query: 127 LLSKRLEAGEAKGEAGFILDGFPRT-------EILEGVTDIDLVINLKLREEALLAKCLG 179
++ +RL +A+ E G++LDG+PR+ E LE D I L + +E L+ + +G
Sbjct: 72 MVKERLRQPDAQ-ENGWLLDGYPRSYSQAMALETLE--IRPDTFILLDVPDELLVERVVG 128
Query: 180 RRICSECGGNYNVACIDIKGENGNXXXXXXXXXXXXHCASKLITRSDDKEEVVRERLRIY 239
RR+ G Y++ + E AS+L R DD EE V+ RL Y
Sbjct: 129 RRLDPVTGKIYHLKYSPPENE---------------EIASRLTQRFDDTEEKVKLRLETY 173
Query: 240 NE 241
+
Sbjct: 174 YQ 175
>pdb|3BE4|A Chain A, Crystal Structure Of Cryptosporidium Parvum Adenylate
Kinase Cgd5_3360
Length = 217
Score = 72.8 bits (177), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 57/210 (27%), Positives = 93/210 (44%), Gaps = 52/210 (24%)
Query: 78 VFLGCPGVGKGTYASRLSNLLGVPHIATGDLLDE--------------IVSQGKLVSDEI 123
+ +G PG GKGT + G+ H++TGD+L E I+ G V DEI
Sbjct: 9 ILIGAPGSGKGTQCEFIKKEYGLAHLSTGDMLREAIKNGTKIGLEAKSIIESGNFVGDEI 68
Query: 124 IINLLSKRLEAGEAKGEAGFILDGFPRT--------EILEGVTD-IDLVINLKLREEALL 174
++ L+ ++ + G GF+LDGFPRT +IL + D + VI ++ + ++
Sbjct: 69 VLGLVKEKFDLGVCVN--GFVLDGFPRTIPQAEGLAKILSEIGDSLTSVIYFEIDDSEII 126
Query: 175 AKCLGRRICSECGGNYNV--------ACIDIKGENGNXXXXXXXXXXXXHCASKLITRSD 226
+ GR G Y+V D+ GE L+ R D
Sbjct: 127 ERISGRCTHPASGRIYHVKYNPPKQPGIDDVTGE-------------------PLVWRDD 167
Query: 227 DKEEVVRERLRIYNEKSRPVEEFYRRRGKL 256
D E V+ RL ++++++ P+ +FY G L
Sbjct: 168 DNAEAVKVRLDVFHKQTAPLVKFYEDLGIL 197
>pdb|3CM0|A Chain A, Crystal Structure Of Adenylate Kinase From Thermus
Thermophilus Hb8
Length = 186
Score = 72.8 bits (177), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 66/215 (30%), Positives = 91/215 (42%), Gaps = 50/215 (23%)
Query: 78 VFLGCPGVGKGTYASRLSNLLGVPHIATGDLLDE--------------IVSQGKLVSDEI 123
+FLG PG GKGT ASRL+ LG ++TGD+L + I+ +G LV D++
Sbjct: 8 IFLGPPGAGKGTQASRLAQELGFKKLSTGDILRDHVARGTPLGERVRPIMERGDLVPDDL 67
Query: 124 IINLLSKRLEAGEAKGEAGFILDGFPRTEILEGVTDIDLVINLKLREEALLAKCLGRRIC 183
I+ L+ + L I DGFPRT L +D R+
Sbjct: 68 ILELIREEL-------AERVIFDGFPRT--LAQAEALD-------------------RLL 99
Query: 184 SECGGNYNVACIDIKGENGNXXXXXXXXXXXXHCASKLITRSDDKEEVVRERLRIYNEKS 243
SE G + G A +L RSDD EE VR RL +Y EK+
Sbjct: 100 SETGTR-------LLGVVLVEVPEEELVRRILRRA-ELEGRSDDNEETVRRRLEVYREKT 151
Query: 244 RPVEEFYRRRGKLLEFDLPGGIPESWPKLLQALNL 278
P+ +Y RG L D G E + ++ AL +
Sbjct: 152 EPLVGYYEARGVLKRVDGLGTPDEVYARIRAALGI 186
>pdb|1TEV|A Chain A, Crystal Structure Of The Human UmpCMP KINASE IN OPEN
Conformation
Length = 196
Score = 70.1 bits (170), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 52/225 (23%), Positives = 93/225 (41%), Gaps = 63/225 (28%)
Query: 80 LGCPGVGKGTYASRLSNLLGVPHIATGDLL---------------DEIVSQGKLVSDEII 124
LG PG GKGT +R+ G H++ G+LL ++ + +GK+V EI
Sbjct: 9 LGGPGAGKGTQCARIVEKYGYTHLSAGELLRDERKNPDSQYGELIEKYIKEGKIVPVEIT 68
Query: 125 INLLSKRLEAGEAKG--EAGFILDGFPRTE--------ILEGVTDIDLVINLKLREEALL 174
I+LL + ++ A + F++DGFPR + ++G D+ V+ E +
Sbjct: 69 ISLLKREMDQTMAANAQKNKFLIDGFPRNQDNLQGWNKTMDGKADVSFVLFFDCNNEICI 128
Query: 175 AKCLGRRICSECGGNYNVACIDIKGENGNXXXXXXXXXXXXHCASKLITRSDDKEEVVRE 234
+CL R K RSDD E + +
Sbjct: 129 ERCLER--------------------------------------GKSSGRSDDNRESLEK 150
Query: 235 RLRIYNEKSRPVEEFYRRRGKLLEFDLPGGIPESWPKLLQALNLE 279
R++ Y + ++P+ + Y GK+ + D + E + +++Q + E
Sbjct: 151 RIQTYLQSTKPIIDLYEEMGKVKKIDASKSVDEVFDEVVQIFDKE 195
>pdb|2XB4|A Chain A, Crystal Structures Of Zinc Containing Adenylate Kinase
From Desulfovibrio Gigas
Length = 223
Score = 63.9 bits (154), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 53/186 (28%), Positives = 81/186 (43%), Gaps = 36/186 (19%)
Query: 78 VFLGCPGVGKGTYASRLSNLLGVPHIATGDLL--------------DEIVSQGKLVSDEI 123
+ G G GKGT + + + + HI +G + E + +G LV D+I
Sbjct: 4 LIFGPNGSGKGTQGNLVKDKYSLAHIESGGIFREHIGGGTELGKKAKEFIDRGDLVPDDI 63
Query: 124 IINLLSKRLEAGEAKGEAGFILDGFPRTEI---------LEGVTDIDLVINLKLREEALL 174
I ++ LE E+KG+ G++LDGFPR + E I+ VI + L E
Sbjct: 64 TIPMV---LETLESKGKDGWLLDGFPRNTVQAQKLFEALQEKGMKINFVIEILLPREVAK 120
Query: 175 AKCLGRRICSECGGNYNVACIDIKGENGNXXXXXXXXXXXXHCASKLITRSDDKEE-VVR 233
+ +GRRIC + N ID NG+ C L R+DD++E +
Sbjct: 121 NRIMGRRICKNNPNHPNNIFIDAIKPNGDVCRV---------CGGALSARADDQDEGAIN 171
Query: 234 ERLRIY 239
+R IY
Sbjct: 172 KRHDIY 177
>pdb|3L0P|A Chain A, Crystal Structures Of Iron Containing Adenylate Kinase
From Desulfovibrio Gigas
pdb|3L0S|A Chain A, Crystal Structures Of Zinc, Cobalt And Iron Containing
Adenylate Kinase From Gram-Negative Bacteria
Desulfovibrio Gigas
pdb|3L0S|C Chain C, Crystal Structures Of Zinc, Cobalt And Iron Containing
Adenylate Kinase From Gram-Negative Bacteria
Desulfovibrio Gigas
Length = 223
Score = 62.0 bits (149), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 52/186 (27%), Positives = 81/186 (43%), Gaps = 36/186 (19%)
Query: 78 VFLGCPGVGKGTYASRLSNLLGVPHIATGDLL--------------DEIVSQGKLVSDEI 123
+ G G GKGT + + + + HI +G + E + +G LV D+I
Sbjct: 4 LIFGPNGSGKGTQGNLVKDKYSLAHIESGGIFREHIGGGTELGKKAKEFIDRGDLVPDDI 63
Query: 124 IINLLSKRLEAGEAKGEAGFILDGFPRTEI---------LEGVTDIDLVINLKLREEALL 174
I ++ LE E+KG+ G++LDGFPR + E I+ VI + L E
Sbjct: 64 TIPMV---LETLESKGKDGWLLDGFPRNTVQAQKLFEALQEKGMKINFVIEILLPREVAK 120
Query: 175 AKCLGRRICSECGGNYNVACIDIKGENGNXXXXXXXXXXXXHCASKLITRSDDKEE-VVR 233
+ +GRRIC + N I+ NG+ C L R+DD++E +
Sbjct: 121 NRIMGRRICKNNPNHPNNIFIEAIKPNGDVCRV---------CGGALSARADDQDEGAIN 171
Query: 234 ERLRIY 239
+R IY
Sbjct: 172 KRHDIY 177
>pdb|3ADK|A Chain A, Refined Structure Of Porcine Cytosolic Adenylate Kinase At
2.1 Angstroms Resolution
Length = 195
Score = 62.0 bits (149), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 52/212 (24%), Positives = 92/212 (43%), Gaps = 48/212 (22%)
Query: 80 LGCPGVGKGTYASRLSNLLGVPHIATGDL--------------LDEIVSQGKLVSDEIII 125
+G PG GKGT ++ G H++TGDL L EI+ +G+LV E ++
Sbjct: 15 VGGPGSGKGTQCEKIVQKYGYTHLSTGDLLRAEVSSGSARGKMLSEIMEKGQLVPLETVL 74
Query: 126 NLLSKRLEAGEAKGEAGFILDGFPRTEILEGVTDIDLVINLKLREEALLAKCLGRRICSE 185
++L + A + GF++DG+PR E+ +G K+ + LL + +
Sbjct: 75 DMLRDAMVA-KVDTSKGFLIDGYPR-EVKQGEE-----FERKIGQPTLL-------LYVD 120
Query: 186 CGGNYNVACIDIKGENGNXXXXXXXXXXXXHCASKLITRSDDKEEVVRERLRIYNEKSRP 245
G + +GE R DD EE +++RL Y + + P
Sbjct: 121 AGPETMTKRLLKRGETSG--------------------RVDDNEETIKKRLETYYKATEP 160
Query: 246 VEEFYRRRGKLLEFDLPGGIPESWPKLLQALN 277
V FY +RG + + + G + + + ++ L+
Sbjct: 161 VIAFYEKRGIVRKVNAEGSVDDVFSQVCTHLD 192
>pdb|1Z83|A Chain A, Crystal Structure Of Human Ak1a In Complex With Ap5a
pdb|1Z83|B Chain B, Crystal Structure Of Human Ak1a In Complex With Ap5a
pdb|1Z83|C Chain C, Crystal Structure Of Human Ak1a In Complex With Ap5a
pdb|2C95|A Chain A, Structure Of Adenylate Kinase 1 In Complex With P1,P4-Di
(Adenosine)tetraphosphate
pdb|2C95|B Chain B, Structure Of Adenylate Kinase 1 In Complex With P1,P4-Di
(Adenosine)tetraphosphate
Length = 196
Score = 61.2 bits (147), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 52/218 (23%), Positives = 91/218 (41%), Gaps = 60/218 (27%)
Query: 80 LGCPGVGKGTYASRLSNLLGVPHIATGDL--------------LDEIVSQGKLVSDEIII 125
+G PG GKGT ++ G H++TGDL L EI+ +G+LV E ++
Sbjct: 15 VGGPGSGKGTQCEKIVQKYGYTHLSTGDLLRSEVSSGSARGKKLSEIMEKGQLVPLETVL 74
Query: 126 NLLSKRLEAGEAKGEAGFILDGFPRTEILEG------VTDIDLVINLKLREEALLAKCLG 179
++L + A + GF++DG+PR E+ +G + L++ + E + + L
Sbjct: 75 DMLRDAMVA-KVNTSKGFLIDGYPR-EVQQGEEFERRIGQPTLLLYVDAGPETMTQRLLK 132
Query: 180 RRICSECGGNYNVACIDIKGENGNXXXXXXXXXXXXHCASKLITRSDDKEEVVRERLRIY 239
R GE R DD EE +++RL Y
Sbjct: 133 R------------------GETSG--------------------RVDDNEETIKKRLETY 154
Query: 240 NEKSRPVEEFYRRRGKLLEFDLPGGIPESWPKLLQALN 277
+ + PV FY +RG + + + G + + ++ L+
Sbjct: 155 YKATEPVIAFYEKRGIVRKVNAEGSVDSVFSQVCTHLD 192
>pdb|3UMF|A Chain A, Schistosoma Mansoni Adenylate Kinase
Length = 217
Score = 60.8 bits (146), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 56/218 (25%), Positives = 90/218 (41%), Gaps = 60/218 (27%)
Query: 80 LGCPGVGKGTYASRLSNLLGVPHIATGDL--------------LDEIVSQGKLVSDEIII 125
LG PG GKGT +L H+++GDL L ++ +G+LV E+++
Sbjct: 35 LGGPGSGKGTQCEKLVQKFHFNHLSSGDLLRAEVQSGSPKGKELKAMMERGELVPLEVVL 94
Query: 126 NLLSKRLEAGEAKGEAGFILDGFPRTEILEG------VTDIDLVINLKLREEALLAKCLG 179
LL + + K F++DG+PR E+ +G V VIN + EE + + L
Sbjct: 95 ALLKEAMIKLVDKN-CHFLIDGYPR-ELDQGIKFEKEVCPCLCVINFDVSEEVMRKRLLK 152
Query: 180 RRICSECGGNYNVACIDIKGENGNXXXXXXXXXXXXHCASKLITRSDDKEEVVRERLRIY 239
R E N R DD EE + +R R +
Sbjct: 153 R------------------AETSN--------------------RVDDNEETIVKRFRTF 174
Query: 240 NEKSRPVEEFYRRRGKLLEFDLPGGIPESWPKLLQALN 277
NE ++PV E Y+++ K++ D G + + K+ L
Sbjct: 175 NELTKPVIEHYKQQNKVITIDASGTVDAIFDKVNHELQ 212
>pdb|2BWJ|A Chain A, Structure Of Adenylate Kinase 5
pdb|2BWJ|B Chain B, Structure Of Adenylate Kinase 5
pdb|2BWJ|C Chain C, Structure Of Adenylate Kinase 5
pdb|2BWJ|D Chain D, Structure Of Adenylate Kinase 5
pdb|2BWJ|E Chain E, Structure Of Adenylate Kinase 5
pdb|2BWJ|F Chain F, Structure Of Adenylate Kinase 5
Length = 199
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 56/215 (26%), Positives = 90/215 (41%), Gaps = 52/215 (24%)
Query: 79 FLGCPGVGKGTYASRLSNLLGVPHIATGDLLDE--------------IVSQGKLVSDEII 124
+G PG GKGT +L G H++TG+LL E I+ +G LV I+
Sbjct: 17 IIGGPGSGKGTQCEKLVEKYGFTHLSTGELLREELASESERSKLIRDIMERGDLVPSGIV 76
Query: 125 INLLSKRLEA--GEAKGEAGFILDGFPRTEILEGVTDIDLVINLKLREEALLAKCLGRRI 182
+ LL + + A G+ + GF++DG+PR E+ +G EE GRRI
Sbjct: 77 LELLKEAMVASLGDTR---GFLIDGYPR-EVKQG-------------EE------FGRRI 113
Query: 183 CSECGGNYNVACIDIKGENGNXXXXXXXXXXXXHCASKLITRSDDKEEVVRERLRIYNEK 242
G V C+D + S+ DD + + +RL Y
Sbjct: 114 ----GDPQLVICMDCSADTMTNRLLQ---------MSRSSLPVDDTTKTIAKRLEAYYRA 160
Query: 243 SRPVEEFYRRRGKLLEFDLPGGIPESWPKLLQALN 277
S PV +Y + +L + + G + + +L A++
Sbjct: 161 SIPVIAYYETKTQLHKINAEGTPEDVFLQLCTAID 195
>pdb|1UKY|A Chain A, Substrate Specificity And Assembly Of Catalytic Center
Derived From Two Structures Of Ligated Uridylate Kinase
pdb|1UKZ|A Chain A, Substrate Specificity And Assembly Of Catalytic Center
Derived From Two Structures Of Ligated Uridylate Kinase
Length = 203
Score = 50.8 bits (120), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 45/205 (21%), Positives = 74/205 (36%), Gaps = 59/205 (28%)
Query: 74 HVQWVF-LGCPGVGKGTYASRLSNLLGVPHIATGDLL---------------DEIVSQGK 117
V +F LG PG GKGT +L H++ GDLL + +G+
Sbjct: 14 QVSVIFVLGGPGAGKGTQCEKLVKDYSFVHLSAGDLLRAEQGRAGSQYGELIKNCIKEGQ 73
Query: 118 LVSDEIIINLLSKRLEAGEAKGEAGFILDGFPRT-----EILEGVTDIDLVINLKLREEA 172
+V EI + LL + + F++DGFPR + + ++ E+
Sbjct: 74 IVPQEITLALLRNAISDNVKANKHKFLIDGFPRKMDQAISFERDIVESKFILFFDCPEDI 133
Query: 173 LLAKCLGRRICSECGGNYNVACIDIKGENGNXXXXXXXXXXXXHCASKLITRSDDKEEVV 232
+L + L R K RSDD E +
Sbjct: 134 MLERLLER--------------------------------------GKTSGRSDDNIESI 155
Query: 233 RERLRIYNEKSRPVEEFYRRRGKLL 257
++R + E S PV E++ + K++
Sbjct: 156 KKRFNTFKETSMPVIEYFETKSKVV 180
>pdb|1QF9|A Chain A, Ph Influences Fluoride Coordination Number Of The Alfx
Phosphoryl Transfer Transition State Analog In UmpCMP
Kinase
pdb|5UKD|A Chain A, Ph Influences Fluoride Coordination Number Of The Alfx
Phosphoryl Transfer Transition State Analog
pdb|1UKE|A Chain A, UmpCMP KINASE FROM SLIME MOLD
pdb|2UKD|A Chain A, UmpCMP KINASE FROM SLIME MOLD COMPLEXED WITH ADP, CMP
pdb|3UKD|A Chain A, UmpCMP KINASE FROM SLIME MOLD COMPLEXED WITH ADP, CMP, AND
Alf3
pdb|4UKD|A Chain A, UmpCMP KINASE FROM SLIME MOLD COMPLEXED WITH ADP, UDP,
Beryllium Fluoride
Length = 194
Score = 48.5 bits (114), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 45/199 (22%), Positives = 76/199 (38%), Gaps = 63/199 (31%)
Query: 80 LGCPGVGKGTYASRLSNLLGVPHIATGDLLDE--------------IVSQGKLVSDEIII 125
LG PG GKGT + + G H++ GDLL + ++ G++V + +
Sbjct: 12 LGGPGSGKGTQCANIVRDFGWVHLSAGDLLRQEQQSGSKDGEMIATMIKNGEIVPSIVTV 71
Query: 126 NLLSKRLEAGEAKGEAGFILDGFPR--------TEILEGVTDIDLVINLKLREEALLAKC 177
LL ++A + K F++DGFPR E ++ D V+ EE + +
Sbjct: 72 KLLKNAIDANQGK---NFLVDGFPRNEENNNSWEENMKDFVDTKFVLFFDCPEEVMTQRL 128
Query: 178 LGRRICSECGGNYNVACIDIKGENGNXXXXXXXXXXXXHCASKLITRSDDKEEVVRERLR 237
L R E G RSDD E +++R
Sbjct: 129 LKR---GESSG-----------------------------------RSDDNIESIKKRFN 150
Query: 238 IYNEKSRPVEEFYRRRGKL 256
+N +++ V + Y + K+
Sbjct: 151 TFNVQTKLVIDHYNKFDKV 169
>pdb|1ZP6|A Chain A, Crystal Structure Of Atu3015, A Putative Cytidylate Kinase
From Agrobacterium Tumefaciens, Northeast Structural
Genomics Target Atr62
Length = 191
Score = 30.0 bits (66), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 35/113 (30%), Positives = 48/113 (42%), Gaps = 15/113 (13%)
Query: 81 GCPGVGKGTYASRLSNLLGVP--HIATGDL--------LDEIVSQGKLVSDEIIINLLSK 130
G PG GK T A L+NL GVP H + DL +D + Q I ++
Sbjct: 16 GHPGSGKSTIAEALANLPGVPKVHFHSDDLWGYIKHGRIDPWLPQSH--QQNRXIXQIAA 73
Query: 131 RLEAGEAKGEAGFILDGFPRTEILEGVTDIDLVIN-LKLREEALLA--KCLGR 180
+ AK ILDG R + L T + ++ + LR A A +CL R
Sbjct: 74 DVAGRYAKEGYFVILDGVVRPDWLPAFTALARPLHYIVLRTTAAEAIERCLDR 126
>pdb|1F3M|A Chain A, Crystal Structure Of Human SerineTHREONINE KINASE PAK1
pdb|1F3M|B Chain B, Crystal Structure Of Human SerineTHREONINE KINASE PAK1
Length = 80
Score = 29.6 bits (65), Expect = 2.3, Method: Composition-based stats.
Identities = 11/26 (42%), Positives = 16/26 (61%)
Query: 264 GIPESWPKLLQALNLEDPEDKQSAAA 289
G+PE W +LLQ N+ E K++ A
Sbjct: 29 GMPEQWARLLQTSNITKSEQKKNPQA 54
>pdb|3QAC|A Chain A, Structure Of Amaranth 11s Proglobulin Seed Storage Protein
From Amaranthus Hypochondriacus L
Length = 465
Score = 29.3 bits (64), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 32/66 (48%), Gaps = 4/66 (6%)
Query: 218 ASKLITRSDDKEEVVR--ERLRIYNEKSRPVEEFYRRRGKLLEFDLPGGIPESWPKLLQA 275
A KL DD+ +VR E L + SR EE R +G LP G+ E+ A
Sbjct: 231 AQKLQAEQDDRGNIVRVQEGLHVIKPPSRAWEE--REQGSRGSRYLPNGVEETICSARLA 288
Query: 276 LNLEDP 281
+N++DP
Sbjct: 289 VNVDDP 294
>pdb|1RKB|A Chain A, The Structure Of Adrenal Gland Protein Ad-004
Length = 173
Score = 29.3 bits (64), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 17/28 (60%)
Query: 81 GCPGVGKGTYASRLSNLLGVPHIATGDL 108
G PGVGK T L++ G+ +I GDL
Sbjct: 11 GTPGVGKTTLGKELASKSGLKYINVGDL 38
>pdb|3GBJ|A Chain A, Crystal Structure Of The Motor Domain Of Kinesin Kif13b
Bound With Adp
pdb|3GBJ|B Chain B, Crystal Structure Of The Motor Domain Of Kinesin Kif13b
Bound With Adp
pdb|3GBJ|C Chain C, Crystal Structure Of The Motor Domain Of Kinesin Kif13b
Bound With Adp
Length = 354
Score = 28.9 bits (63), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 39/85 (45%), Gaps = 10/85 (11%)
Query: 120 SDEIIINLLSKRLEAGEAKGEAG-FILDGFPRTEILEGVTDIDLVINLKLREEALLAKCL 178
++++I+N ++ L G+A+G+ F D +D + K + ++ KCL
Sbjct: 29 ANKVILNPVNTNLSKGDARGQPKVFAYD--------HCFWSMDESVKEKYAGQDIVFKCL 80
Query: 179 GRRICSECGGNYNVACIDIKGENGN 203
G I YN ACI G+ G+
Sbjct: 81 GENILQNAFDGYN-ACIFAYGQTGS 104
>pdb|3IIJ|A Chain A, The Structure Of Hcinap-Adp Complex At 1.76 Angstroms
Resolution.
pdb|3IIK|A Chain A, The Structure Of Hcinap-So4 Complex At 1.95 Angstroms
Resolution
pdb|3IIL|A Chain A, The Structure Of Hcinap-Mgadp-Pi Complex At 2.0 Angstroms
Resolution
pdb|3IIM|A Chain A, The Structure Of Hcinap-Dadp Complex At 2.0 Angstroms
Resolution
Length = 180
Score = 28.9 bits (63), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 78 VFLGCPGVGKGTYASRLSNLLGVPHIATGDL 108
+ G PGVGK T L++ G+ +I GDL
Sbjct: 15 LLTGTPGVGKTTLGKELASKSGLKYINVGDL 45
>pdb|2IYQ|A Chain A, Shikimate Kinase From Mycobacterium Tuberculosis In
Complex With Shikimate And Adp
pdb|2IYR|A Chain A, Shikimate Kinase From Mycobacterium Tuberculosis In
Complex With Shikimate
pdb|2IYR|B Chain B, Shikimate Kinase From Mycobacterium Tuberculosis In
Complex With Shikimate
pdb|2IYS|A Chain A, Shikimate Kinase From Mycobacterium Tuberculosis In
Complex With Shikimate, Open Lid (Conf. A)
pdb|2IYT|A Chain A, Shikimate Kinase From Mycobacterium Tuberculosis In
Unliganded State, Open Lid (conf. A)
pdb|2IYU|A Chain A, Shikimate Kinase From Mycobacterium Tuberculosis In
Complex With Adp, Open Lid (Conf. A)
pdb|2IYV|A Chain A, Shikimate Kinase From Mycobacterium Tuberculosis In
Complex With Adp, Open Lid (Conf. B)
pdb|2IYW|A Chain A, Shikimate Kinase From Mycobacterium Tuberculosis In
Complex With Mgatp, Open Lid (Conf. B)
pdb|2IYX|A Chain A, Shikimate Kinase From Mycobacterium Tuberculosis In
Complex With Shikimate And So4
pdb|2IYY|A Chain A, Shikimate Kinase From Mycobacterium Tuberculosis In
Complex With Shikimate-3-Phosphate And So4
pdb|2IYZ|A Chain A, Shikimate Kinase From Mycobacterium Tuberculosis In
Complex With Shikimate-3-Phosphate And Adp
Length = 184
Score = 27.7 bits (60), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 15/25 (60%)
Query: 76 QWVFLGCPGVGKGTYASRLSNLLGV 100
+ V +G PG GK T RL+ LGV
Sbjct: 4 KAVLVGLPGSGKSTIGRRLAKALGV 28
>pdb|1L4U|A Chain A, Crystal Structure Of Shikimate Kinase From Mycobacterium
Tuberculosis In Complex With Mgadp And Pt(Ii) At 1.8
Angstrom Resolution
pdb|1L4Y|A Chain A, Crystal Structure Of Shikimate Kinase From Mycobacterium
Tuberculosis In Complex With Mgadp At 2.0 Angstrom
Resolution
pdb|1U8A|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Shikimate
Kinase In Complex With Shikimate And Adp At 2.15
Angstrom Resolution
pdb|1WE2|A Chain A, Crystal Structure Of Shikimate Kinase From Mycobacterium
Tuberculosis In Complex With Mgadp And Shikimic Acid
pdb|1ZYU|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Shikimate
Kinase In Complex With Shikimate And Amppcp At 2.85
Angstrom Resolution
pdb|2G1J|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Shikimate
Kinase At 2.0 Angstrom Resolution
pdb|2G1J|B Chain B, Crystal Structure Of Mycobacterium Tuberculosis Shikimate
Kinase At 2.0 Angstrom Resolution
pdb|2G1K|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Shikimate
Kinase In Complex With Shikimate At 1.75 Angstrom
Resolution
pdb|2DFN|A Chain A, Structure Of Shikimate Kinase From Mycobacterium
Tuberculosis Complexed With Adp And Shikimate At 1.9
Angstrons Of Resolution
pdb|2DFT|A Chain A, Structure Of Shikimate Kinase From Mycobacterium
Tuberculosis Complexed With Adp And Mg At 2.8 Angstrons
Of Resolution
pdb|2DFT|B Chain B, Structure Of Shikimate Kinase From Mycobacterium
Tuberculosis Complexed With Adp And Mg At 2.8 Angstrons
Of Resolution
pdb|2DFT|C Chain C, Structure Of Shikimate Kinase From Mycobacterium
Tuberculosis Complexed With Adp And Mg At 2.8 Angstrons
Of Resolution
pdb|2DFT|D Chain D, Structure Of Shikimate Kinase From Mycobacterium
Tuberculosis Complexed With Adp And Mg At 2.8 Angstrons
Of Resolution
pdb|3BAF|A Chain A, Crystal Structure Of Shikimate Kinase From Mycobacterium
Tuberculosis In Complex With Amp-Pnp
Length = 176
Score = 27.7 bits (60), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 15/25 (60%)
Query: 76 QWVFLGCPGVGKGTYASRLSNLLGV 100
+ V +G PG GK T RL+ LGV
Sbjct: 4 KAVLVGLPGSGKSTIGRRLAKALGV 28
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.138 0.406
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,162,701
Number of Sequences: 62578
Number of extensions: 264508
Number of successful extensions: 864
Number of sequences better than 100.0: 53
Number of HSP's better than 100.0 without gapping: 50
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 690
Number of HSP's gapped (non-prelim): 63
length of query: 289
length of database: 14,973,337
effective HSP length: 98
effective length of query: 191
effective length of database: 8,840,693
effective search space: 1688572363
effective search space used: 1688572363
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.3 bits)