Query 022951
Match_columns 289
No_of_seqs 260 out of 1882
Neff 7.8
Searched_HMMs 46136
Date Fri Mar 29 07:21:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022951.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/022951hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02459 probable adenylate ki 100.0 2.4E-41 5.3E-46 300.7 24.4 219 70-289 25-261 (261)
2 PLN02674 adenylate kinase 100.0 4.9E-36 1.1E-40 265.5 22.4 188 74-276 31-243 (244)
3 PRK14526 adenylate kinase; Pro 100.0 2.5E-34 5.5E-39 250.6 21.7 190 75-279 1-210 (211)
4 PTZ00088 adenylate kinase 1; P 100.0 1.2E-33 2.7E-38 249.0 23.3 198 73-276 5-229 (229)
5 TIGR01351 adk adenylate kinase 100.0 1.1E-33 2.4E-38 246.6 21.8 189 76-276 1-209 (210)
6 PRK14529 adenylate kinase; Pro 100.0 3.3E-33 7.1E-38 244.7 20.7 187 75-276 1-222 (223)
7 PRK00279 adk adenylate kinase; 100.0 1.3E-32 2.8E-37 240.6 21.5 185 75-278 1-214 (215)
8 PRK14530 adenylate kinase; Pro 100.0 8.3E-32 1.8E-36 235.6 22.0 188 75-278 4-213 (215)
9 KOG3079 Uridylate kinase/adeny 100.0 1E-29 2.2E-34 211.8 19.8 167 72-278 6-193 (195)
10 KOG3078 Adenylate kinase [Nucl 100.0 9.7E-30 2.1E-34 221.3 16.2 201 73-287 14-233 (235)
11 PRK13808 adenylate kinase; Pro 100.0 5.4E-29 1.2E-33 228.8 19.3 173 75-281 1-196 (333)
12 PRK14528 adenylate kinase; Pro 100.0 1.8E-28 3.9E-33 210.0 20.4 162 75-276 2-186 (186)
13 cd01428 ADK Adenylate kinase ( 100.0 2.2E-28 4.8E-33 209.5 19.9 172 76-268 1-194 (194)
14 PRK14531 adenylate kinase; Pro 100.0 5.9E-28 1.3E-32 206.2 19.5 157 75-276 3-182 (183)
15 PRK14532 adenylate kinase; Pro 100.0 1E-27 2.2E-32 205.1 20.3 163 75-277 1-186 (188)
16 PLN02842 nucleotide kinase 100.0 3.4E-28 7.4E-33 233.4 19.2 186 78-281 1-205 (505)
17 PRK14527 adenylate kinase; Pro 100.0 1.4E-27 3.1E-32 205.0 20.5 165 72-277 4-191 (191)
18 PLN02200 adenylate kinase fami 100.0 9.3E-27 2E-31 206.2 21.8 168 71-281 40-227 (234)
19 TIGR01359 UMP_CMP_kin_fam UMP- 100.0 1.1E-26 2.3E-31 197.7 19.9 160 76-276 1-182 (183)
20 PRK02496 adk adenylate kinase; 99.9 3.2E-26 6.9E-31 195.3 20.4 160 74-277 1-183 (184)
21 COG0563 Adk Adenylate kinase a 99.9 4.1E-25 8.9E-30 187.7 17.4 154 75-276 1-177 (178)
22 TIGR01360 aden_kin_iso1 adenyl 99.9 4E-24 8.6E-29 182.0 21.7 165 74-277 3-186 (188)
23 PF00406 ADK: Adenylate kinase 99.9 1.6E-23 3.4E-28 173.3 16.1 128 79-255 1-151 (151)
24 PRK03839 putative kinase; Prov 99.7 1.5E-16 3.3E-21 135.1 16.4 152 75-280 1-155 (180)
25 PRK06217 hypothetical protein; 99.7 2.9E-16 6.4E-21 133.9 15.8 168 74-278 1-179 (183)
26 PRK13974 thymidylate kinase; P 99.7 3.7E-15 8.1E-20 130.1 15.7 157 74-278 3-206 (212)
27 PRK13949 shikimate kinase; Pro 99.6 7.7E-15 1.7E-19 123.8 15.3 100 75-180 2-114 (169)
28 COG0703 AroK Shikimate kinase 99.6 8.7E-15 1.9E-19 122.5 15.3 153 74-279 2-169 (172)
29 PRK01184 hypothetical protein; 99.6 1.9E-14 4.1E-19 122.5 17.4 156 75-278 2-178 (184)
30 PRK13973 thymidylate kinase; P 99.6 3.5E-14 7.6E-19 124.1 18.9 163 74-279 3-207 (213)
31 PRK08356 hypothetical protein; 99.6 7.5E-15 1.6E-19 126.5 11.7 101 74-181 5-136 (195)
32 PRK08233 hypothetical protein; 99.6 4.4E-14 9.6E-19 119.4 13.7 160 74-279 3-178 (182)
33 PRK13975 thymidylate kinase; P 99.6 1.8E-13 3.9E-18 117.4 16.9 161 75-281 3-193 (196)
34 PRK08118 topology modulation p 99.6 2.3E-14 5E-19 120.7 10.2 99 75-182 2-101 (167)
35 PHA02530 pseT polynucleotide k 99.6 5.5E-14 1.2E-18 128.6 13.5 155 74-268 2-172 (300)
36 COG3265 GntK Gluconate kinase 99.5 1.2E-13 2.6E-18 111.9 13.0 149 80-278 1-159 (161)
37 PRK03731 aroL shikimate kinase 99.5 2.1E-13 4.5E-18 114.7 15.0 157 75-278 3-170 (171)
38 PRK04040 adenylate kinase; Pro 99.5 6.6E-13 1.4E-17 113.9 17.5 161 74-277 2-188 (188)
39 KOG3877 NADH:ubiquinone oxidor 99.5 3.3E-13 7.1E-18 119.4 15.1 145 31-182 30-240 (393)
40 PRK13946 shikimate kinase; Pro 99.5 9E-13 2E-17 112.5 17.2 161 73-281 9-179 (184)
41 PRK06762 hypothetical protein; 99.5 1.1E-12 2.5E-17 109.6 16.8 151 74-279 2-165 (166)
42 cd01672 TMPK Thymidine monopho 99.5 2E-12 4.3E-17 110.3 17.6 158 75-277 1-199 (200)
43 PRK13947 shikimate kinase; Pro 99.5 8E-13 1.7E-17 111.0 14.8 103 76-181 3-115 (171)
44 TIGR00041 DTMP_kinase thymidyl 99.5 1.7E-12 3.7E-17 111.3 16.9 107 74-181 3-149 (195)
45 PRK04182 cytidylate kinase; Pr 99.5 1.4E-12 2.9E-17 110.0 15.6 104 75-181 1-113 (180)
46 PRK00698 tmk thymidylate kinas 99.5 3.7E-12 8E-17 109.8 18.4 160 74-278 3-202 (205)
47 PRK00625 shikimate kinase; Pro 99.5 5.6E-13 1.2E-17 112.8 12.9 105 75-181 1-117 (173)
48 TIGR01313 therm_gnt_kin carboh 99.5 1.5E-12 3.2E-17 108.6 15.2 150 77-276 1-161 (163)
49 PRK13948 shikimate kinase; Pro 99.4 3.6E-12 7.8E-17 108.7 15.5 101 73-178 9-121 (182)
50 KOG3354 Gluconate kinase [Carb 99.4 1.5E-12 3.2E-17 106.3 12.1 155 74-278 12-188 (191)
51 COG1936 Predicted nucleotide k 99.4 4E-12 8.6E-17 105.8 14.9 96 75-182 1-105 (180)
52 TIGR02173 cyt_kin_arch cytidyl 99.4 7.9E-12 1.7E-16 104.5 16.9 104 75-181 1-113 (171)
53 PRK00131 aroK shikimate kinase 99.4 2.7E-12 5.9E-17 107.4 14.0 106 73-181 3-118 (175)
54 PRK00081 coaE dephospho-CoA ki 99.4 3.2E-12 7E-17 110.1 14.2 148 75-277 3-192 (194)
55 PRK10078 ribose 1,5-bisphospho 99.4 2.1E-12 4.6E-17 110.4 12.9 148 75-280 3-178 (186)
56 PLN02924 thymidylate kinase 99.4 1.7E-11 3.6E-16 107.7 18.6 155 72-278 14-203 (220)
57 COG1102 Cmk Cytidylate kinase 99.4 1.1E-11 2.3E-16 102.1 16.1 103 75-181 1-112 (179)
58 COG0125 Tmk Thymidylate kinase 99.4 2.4E-11 5.3E-16 105.5 19.3 162 73-279 2-204 (208)
59 PRK05057 aroK shikimate kinase 99.4 7.9E-12 1.7E-16 105.7 15.2 102 74-181 4-118 (172)
60 PRK14730 coaE dephospho-CoA ki 99.4 7.4E-12 1.6E-16 108.0 14.3 148 75-277 2-193 (195)
61 PRK14731 coaE dephospho-CoA ki 99.4 4E-12 8.6E-17 110.8 12.5 152 73-278 4-202 (208)
62 PF13671 AAA_33: AAA domain; P 99.4 4E-12 8.6E-17 103.2 11.6 107 76-183 1-121 (143)
63 PRK09825 idnK D-gluconate kina 99.4 1.2E-11 2.6E-16 105.0 14.8 156 75-279 4-169 (176)
64 PLN02199 shikimate kinase 99.4 2E-11 4.2E-16 110.7 16.7 103 74-179 102-214 (303)
65 KOG3347 Predicted nucleotide k 99.4 8.2E-12 1.8E-16 101.4 12.0 96 73-181 6-114 (176)
66 PRK07261 topology modulation p 99.4 2E-12 4.3E-17 109.3 8.1 101 75-183 1-102 (171)
67 PRK14734 coaE dephospho-CoA ki 99.3 1.8E-11 4E-16 106.0 13.8 150 75-278 2-194 (200)
68 PRK14738 gmk guanylate kinase; 99.3 7.5E-12 1.6E-16 108.9 10.9 156 71-282 10-198 (206)
69 PF02223 Thymidylate_kin: Thym 99.3 2.5E-11 5.3E-16 103.5 13.6 102 79-181 1-140 (186)
70 TIGR02322 phosphon_PhnN phosph 99.3 4.7E-11 1E-15 101.1 14.9 149 75-279 2-179 (179)
71 PRK08154 anaerobic benzoate ca 99.3 3.9E-11 8.5E-16 110.6 15.2 106 72-181 131-248 (309)
72 smart00072 GuKc Guanylate kina 99.3 2.3E-11 4.9E-16 103.9 12.5 150 74-279 2-183 (184)
73 cd02030 NDUO42 NADH:Ubiquinone 99.3 6.5E-11 1.4E-15 103.9 15.6 106 76-181 1-164 (219)
74 TIGR03574 selen_PSTK L-seryl-t 99.3 2.2E-11 4.7E-16 108.8 12.7 151 76-278 1-169 (249)
75 PRK07933 thymidylate kinase; V 99.3 9.9E-11 2.1E-15 102.4 16.4 163 75-276 1-211 (213)
76 TIGR00152 dephospho-CoA kinase 99.3 2.9E-11 6.3E-16 103.4 12.7 144 76-273 1-187 (188)
77 cd00227 CPT Chloramphenicol (C 99.3 9.6E-11 2.1E-15 99.1 15.3 106 75-181 3-132 (175)
78 PLN02422 dephospho-CoA kinase 99.3 5.8E-11 1.3E-15 104.8 14.2 150 75-278 2-194 (232)
79 cd02021 GntK Gluconate kinase 99.3 5.2E-11 1.1E-15 97.9 13.1 106 76-181 1-119 (150)
80 cd00464 SK Shikimate kinase (S 99.3 1E-10 2.2E-15 96.1 14.5 103 77-181 2-113 (154)
81 PF13207 AAA_17: AAA domain; P 99.3 5.3E-12 1.1E-16 99.8 6.3 105 76-181 1-111 (121)
82 PRK05541 adenylylsulfate kinas 99.3 1.5E-11 3.4E-16 103.9 9.3 107 72-179 5-121 (176)
83 COG0283 Cmk Cytidylate kinase 99.3 1.5E-11 3.2E-16 105.9 9.0 35 75-109 5-39 (222)
84 PRK13976 thymidylate kinase; P 99.3 3.9E-10 8.5E-15 98.3 17.9 157 75-280 1-203 (209)
85 cd02020 CMPK Cytidine monophos 99.3 2.1E-11 4.5E-16 99.2 9.3 101 76-180 1-103 (147)
86 PRK14021 bifunctional shikimat 99.3 1.4E-10 3.1E-15 114.5 16.0 103 73-180 5-123 (542)
87 PRK14733 coaE dephospho-CoA ki 99.3 1.5E-10 3.3E-15 100.3 14.1 153 73-279 5-199 (204)
88 COG0237 CoaE Dephospho-CoA kin 99.2 9.9E-11 2.2E-15 101.3 12.5 150 74-279 2-193 (201)
89 PTZ00451 dephospho-CoA kinase; 99.2 2E-10 4.3E-15 102.2 14.7 152 75-278 2-207 (244)
90 PF01202 SKI: Shikimate kinase 99.2 1.1E-10 2.3E-15 97.3 12.2 96 83-181 1-106 (158)
91 COG0194 Gmk Guanylate kinase [ 99.2 8.1E-11 1.8E-15 99.3 10.7 51 222-279 133-183 (191)
92 PRK11545 gntK gluconate kinase 99.2 2E-10 4.4E-15 96.2 13.0 150 80-278 1-160 (163)
93 cd01673 dNK Deoxyribonucleosid 99.2 2.2E-10 4.9E-15 98.0 13.3 106 76-181 1-146 (193)
94 PRK14732 coaE dephospho-CoA ki 99.2 2.1E-10 4.5E-15 99.1 12.6 145 77-277 2-189 (196)
95 PRK14737 gmk guanylate kinase; 99.2 1.9E-10 4.2E-15 98.5 11.9 150 73-279 3-185 (186)
96 PRK05480 uridine/cytidine kina 99.2 4E-10 8.8E-15 97.9 13.5 108 72-181 4-147 (209)
97 COG1428 Deoxynucleoside kinase 99.2 5.8E-10 1.2E-14 95.9 13.1 30 74-103 4-33 (216)
98 PRK03333 coaE dephospho-CoA ki 99.2 4.4E-10 9.5E-15 107.0 13.7 101 75-181 2-145 (395)
99 PRK12339 2-phosphoglycerate ki 99.2 2.8E-09 6E-14 92.1 17.1 109 73-182 2-142 (197)
100 cd02022 DPCK Dephospho-coenzym 99.1 3.6E-10 7.8E-15 96.1 11.1 101 76-181 1-143 (179)
101 PRK00300 gmk guanylate kinase; 99.1 2.4E-09 5.2E-14 92.5 16.3 151 73-279 4-185 (205)
102 PRK06547 hypothetical protein; 99.1 5.5E-10 1.2E-14 94.5 10.2 107 71-181 12-139 (172)
103 PF01121 CoaE: Dephospho-CoA k 99.1 7.4E-10 1.6E-14 94.3 10.4 102 75-181 1-144 (180)
104 PRK13951 bifunctional shikimat 99.1 1.3E-09 2.9E-14 106.2 12.9 100 75-180 1-112 (488)
105 TIGR03263 guanyl_kin guanylate 99.1 2.4E-09 5.3E-14 90.5 12.2 147 75-277 2-179 (180)
106 TIGR00017 cmk cytidylate kinas 99.0 1.5E-09 3.3E-14 95.1 10.4 35 75-109 3-37 (217)
107 PRK13477 bifunctional pantoate 99.0 4E-09 8.7E-14 102.8 14.1 39 73-111 283-321 (512)
108 PRK00023 cmk cytidylate kinase 99.0 5.2E-09 1.1E-13 92.3 13.1 36 74-109 4-39 (225)
109 TIGR00235 udk uridine kinase. 99.0 8.7E-09 1.9E-13 89.5 13.7 109 71-181 3-147 (207)
110 PRK12338 hypothetical protein; 99.0 1.4E-08 3E-13 93.4 15.6 108 73-181 3-151 (319)
111 COG0572 Udk Uridine kinase [Nu 99.0 2.2E-09 4.8E-14 93.2 9.2 108 72-181 6-149 (218)
112 PRK00889 adenylylsulfate kinas 99.0 3.2E-09 7E-14 89.6 10.0 103 73-177 3-117 (175)
113 cd02024 NRK1 Nicotinamide ribo 99.0 2.7E-09 5.8E-14 91.4 9.2 104 76-181 1-152 (187)
114 PRK11860 bifunctional 3-phosph 99.0 7.6E-09 1.6E-13 104.7 13.6 38 74-111 442-479 (661)
115 PTZ00301 uridine kinase; Provi 99.0 1.9E-09 4.1E-14 94.1 7.7 107 74-182 3-149 (210)
116 PF13238 AAA_18: AAA domain; P 99.0 8.4E-10 1.8E-14 87.4 4.9 104 77-182 1-114 (129)
117 COG4088 Predicted nucleotide k 98.9 1E-08 2.2E-13 87.9 11.2 103 75-180 2-122 (261)
118 COG2019 AdkA Archaeal adenylat 98.9 1.5E-07 3.3E-12 78.1 17.1 104 74-179 4-129 (189)
119 PRK09518 bifunctional cytidyla 98.9 1.3E-08 2.7E-13 103.9 12.9 37 75-111 2-38 (712)
120 COG0645 Predicted kinase [Gene 98.9 5E-08 1.1E-12 81.2 13.9 106 75-182 2-126 (170)
121 PF00625 Guanylate_kin: Guanyl 98.9 2.4E-08 5.3E-13 85.0 12.4 26 74-99 2-27 (183)
122 TIGR00455 apsK adenylylsulfate 98.9 2.1E-08 4.5E-13 85.4 11.9 103 72-176 16-132 (184)
123 PRK05537 bifunctional sulfate 98.9 1.3E-08 2.8E-13 101.0 12.0 103 73-177 391-509 (568)
124 PRK05416 glmZ(sRNA)-inactivati 98.9 8.2E-08 1.8E-12 87.6 16.1 92 74-180 6-106 (288)
125 KOG3220 Similar to bacterial d 98.9 7.2E-08 1.6E-12 82.2 14.4 151 75-279 2-195 (225)
126 cd02023 UMPK Uridine monophosp 98.9 2.7E-08 5.8E-13 85.6 11.6 104 76-181 1-140 (198)
127 PRK07667 uridine kinase; Provi 98.9 3.3E-08 7.1E-13 85.1 11.9 107 72-180 15-159 (193)
128 PRK06696 uridine kinase; Valid 98.8 5.6E-09 1.2E-13 91.8 6.6 108 72-181 20-168 (223)
129 KOG3327 Thymidylate kinase/ade 98.8 5.6E-08 1.2E-12 81.8 12.1 155 73-280 4-197 (208)
130 PRK03846 adenylylsulfate kinas 98.8 2E-08 4.4E-13 86.6 9.8 103 71-176 21-138 (198)
131 TIGR01663 PNK-3'Pase polynucle 98.8 3.8E-08 8.1E-13 96.5 12.1 96 72-182 367-470 (526)
132 PLN02772 guanylate kinase 98.8 1.1E-07 2.4E-12 89.5 13.6 53 225-281 269-321 (398)
133 cd02027 APSK Adenosine 5'-phos 98.7 1.2E-07 2.6E-12 78.2 11.3 102 76-179 1-116 (149)
134 PLN02348 phosphoribulokinase 98.7 1.6E-08 3.4E-13 95.2 6.6 107 72-181 47-204 (395)
135 cd02025 PanK Pantothenate kina 98.7 3.1E-08 6.7E-13 87.1 7.7 105 76-182 1-151 (220)
136 PRK07429 phosphoribulokinase; 98.7 3.7E-08 7.9E-13 91.5 8.3 107 72-181 6-146 (327)
137 PF08433 KTI12: Chromatin asso 98.7 1.4E-07 3.1E-12 85.3 11.3 103 75-181 2-120 (270)
138 PF06414 Zeta_toxin: Zeta toxi 98.7 1E-07 2.3E-12 82.2 9.2 107 71-182 12-143 (199)
139 PF00485 PRK: Phosphoribulokin 98.6 2.1E-07 4.6E-12 79.9 10.2 104 76-182 1-149 (194)
140 PRK04220 2-phosphoglycerate ki 98.6 1.1E-06 2.4E-11 80.3 15.3 38 72-109 90-128 (301)
141 PF01583 APS_kinase: Adenylyls 98.6 1.5E-07 3.3E-12 78.1 8.7 103 73-176 1-116 (156)
142 PRK12337 2-phosphoglycerate ki 98.6 8.1E-07 1.8E-11 85.3 14.8 37 73-109 254-291 (475)
143 PRK09270 nucleoside triphospha 98.6 3E-07 6.6E-12 81.1 10.9 110 72-181 31-182 (229)
144 PRK05506 bifunctional sulfate 98.6 2.4E-07 5.3E-12 93.4 11.1 105 72-177 458-575 (632)
145 PRK05439 pantothenate kinase; 98.6 4.3E-08 9.4E-13 90.1 4.7 112 71-182 83-239 (311)
146 COG0529 CysC Adenylylsulfate k 98.6 8.8E-07 1.9E-11 74.4 11.8 100 71-176 20-137 (197)
147 PRK12269 bifunctional cytidyla 98.6 1E-06 2.2E-11 91.0 14.5 37 75-111 35-71 (863)
148 PF07931 CPT: Chloramphenicol 98.6 2.4E-07 5.2E-12 78.4 8.0 106 75-181 2-131 (174)
149 PF03668 ATP_bind_2: P-loop AT 98.6 5.4E-06 1.2E-10 74.9 16.8 96 75-184 2-107 (284)
150 TIGR03575 selen_PSTK_euk L-ser 98.6 2.3E-07 5E-12 86.3 8.3 33 77-109 2-40 (340)
151 cd02026 PRK Phosphoribulokinas 98.6 1.5E-07 3.3E-12 85.3 7.0 103 76-181 1-137 (273)
152 cd02019 NK Nucleoside/nucleoti 98.5 2.1E-07 4.5E-12 66.7 6.2 57 76-168 1-63 (69)
153 cd02028 UMPK_like Uridine mono 98.5 3.3E-07 7.2E-12 77.9 8.1 103 76-180 1-139 (179)
154 COG3709 Uncharacterized compon 98.5 4.7E-06 1E-10 69.0 13.8 150 74-280 5-184 (192)
155 TIGR00554 panK_bact pantothena 98.5 2.1E-07 4.6E-12 84.9 6.2 109 72-182 60-219 (290)
156 PLN02318 phosphoribulokinase/u 98.4 6.1E-07 1.3E-11 88.3 8.2 37 73-109 64-101 (656)
157 PHA00729 NTP-binding motif con 98.4 1.7E-06 3.7E-11 76.0 9.7 106 75-182 18-141 (226)
158 COG4639 Predicted kinase [Gene 98.4 2.2E-06 4.7E-11 70.5 9.6 103 75-180 3-117 (168)
159 COG1072 CoaA Panthothenate kin 98.4 5.7E-07 1.2E-11 80.4 6.6 113 71-183 79-234 (283)
160 PLN02165 adenylate isopentenyl 98.4 2.1E-06 4.5E-11 79.6 10.2 38 71-108 40-77 (334)
161 PHA03132 thymidine kinase; Pro 98.3 2.1E-05 4.7E-10 77.7 16.4 29 73-101 256-284 (580)
162 PF01591 6PF2K: 6-phosphofruct 98.2 1.6E-05 3.4E-10 69.9 11.6 143 70-247 8-179 (222)
163 COG2074 2-phosphoglycerate kin 98.2 6.5E-05 1.4E-09 66.5 14.4 42 72-113 87-128 (299)
164 PRK15453 phosphoribulokinase; 98.1 1.6E-05 3.5E-10 72.0 9.9 38 72-109 3-45 (290)
165 PF01745 IPT: Isopentenyl tran 98.1 2.2E-05 4.9E-10 68.0 9.7 104 75-181 2-139 (233)
166 COG1660 Predicted P-loop-conta 98.1 0.00018 3.9E-09 64.0 14.9 96 75-184 2-108 (286)
167 KOG0707 Guanylate kinase [Nucl 98.0 1.3E-05 2.8E-10 70.1 7.1 60 223-285 169-228 (231)
168 PF13521 AAA_28: AAA domain; P 98.0 1.2E-05 2.6E-10 66.9 6.5 38 76-116 1-38 (163)
169 PRK05800 cobU adenosylcobinami 98.0 2.1E-05 4.5E-10 66.4 7.9 31 75-105 2-34 (170)
170 PRK06761 hypothetical protein; 98.0 4.2E-05 9E-10 69.6 9.6 30 75-104 4-33 (282)
171 PRK00091 miaA tRNA delta(2)-is 98.0 1.2E-05 2.5E-10 74.2 6.1 36 74-109 4-39 (307)
172 PF00004 AAA: ATPase family as 98.0 5.8E-06 1.3E-10 65.4 3.5 33 77-109 1-35 (132)
173 PLN02840 tRNA dimethylallyltra 97.9 1.7E-05 3.6E-10 75.8 6.6 37 73-109 20-56 (421)
174 KOG3308 Uncharacterized protei 97.9 2.4E-05 5.3E-10 67.0 6.2 105 74-181 4-149 (225)
175 PF13189 Cytidylate_kin2: Cyti 97.9 0.00019 4.1E-09 61.0 11.6 102 76-181 1-135 (179)
176 PLN02748 tRNA dimethylallyltra 97.8 5.4E-05 1.2E-09 73.4 8.1 38 72-109 20-57 (468)
177 cd00071 GMPK Guanosine monopho 97.8 6.8E-05 1.5E-09 60.9 7.5 24 76-99 1-24 (137)
178 PHA03136 thymidine kinase; Pro 97.7 0.0021 4.6E-08 60.4 16.4 24 159-182 191-214 (378)
179 cd02029 PRK_like Phosphoribulo 97.7 7.1E-05 1.5E-09 67.4 6.3 34 76-109 1-39 (277)
180 PF10662 PduV-EutP: Ethanolami 97.7 0.00026 5.6E-09 57.9 8.9 67 75-147 2-73 (143)
181 KOG0733 Nuclear AAA ATPase (VC 97.7 0.00011 2.4E-09 72.2 7.8 104 75-178 224-370 (802)
182 KOG0730 AAA+-type ATPase [Post 97.7 0.00023 5E-09 70.5 9.8 38 72-109 466-505 (693)
183 TIGR00174 miaA tRNA isopenteny 97.7 4.6E-05 1E-09 69.5 4.6 34 76-109 1-34 (287)
184 CHL00195 ycf46 Ycf46; Provisio 97.7 0.00035 7.6E-09 68.4 11.0 33 73-105 258-290 (489)
185 PF08303 tRNA_lig_kinase: tRNA 97.6 0.00094 2E-08 55.7 11.1 60 77-147 2-62 (168)
186 PF05496 RuvB_N: Holliday junc 97.6 5.4E-05 1.2E-09 66.4 3.9 30 75-104 51-80 (233)
187 COG1618 Predicted nucleotide k 97.6 6.5E-05 1.4E-09 62.3 4.0 27 73-99 4-30 (179)
188 PF07728 AAA_5: AAA domain (dy 97.6 6.8E-05 1.5E-09 60.5 3.9 28 77-104 2-29 (139)
189 PRK12323 DNA polymerase III su 97.6 0.00091 2E-08 67.1 12.5 27 74-100 38-64 (700)
190 COG0324 MiaA tRNA delta(2)-iso 97.6 0.00014 2.9E-09 66.8 6.2 36 74-109 3-38 (308)
191 PRK09169 hypothetical protein; 97.6 0.00061 1.3E-08 75.2 11.9 98 75-180 2111-2220(2316)
192 smart00382 AAA ATPases associa 97.6 6.2E-05 1.4E-09 58.9 3.4 28 74-101 2-29 (148)
193 TIGR03707 PPK2_P_aer polyphosp 97.6 0.0034 7.3E-08 55.5 14.5 165 73-280 30-225 (230)
194 PTZ00322 6-phosphofructo-2-kin 97.5 0.00043 9.3E-09 70.4 10.0 30 74-103 215-244 (664)
195 TIGR00390 hslU ATP-dependent p 97.5 7.7E-05 1.7E-09 71.1 4.1 34 74-107 47-80 (441)
196 cd00544 CobU Adenosylcobinamid 97.5 0.00053 1.2E-08 57.8 8.5 30 76-105 1-32 (169)
197 PRK07003 DNA polymerase III su 97.5 0.0013 2.9E-08 66.9 12.6 28 74-101 38-65 (830)
198 KOG1384 tRNA delta(2)-isopente 97.5 0.00028 6.1E-09 64.7 7.1 37 73-109 6-42 (348)
199 PRK07764 DNA polymerase III su 97.5 0.0008 1.7E-08 69.7 11.2 28 74-101 37-64 (824)
200 COG2256 MGS1 ATPase related to 97.5 0.0006 1.3E-08 64.2 9.1 34 73-106 47-80 (436)
201 KOG0635 Adenosine 5'-phosphosu 97.5 0.0026 5.6E-08 52.4 11.6 28 71-98 28-55 (207)
202 KOG0744 AAA+-type ATPase [Post 97.5 0.00042 9.1E-09 63.6 7.7 27 74-100 177-203 (423)
203 TIGR03708 poly_P_AMP_trns poly 97.5 0.0044 9.4E-08 60.6 15.1 150 72-264 38-215 (493)
204 PRK05201 hslU ATP-dependent pr 97.5 0.00011 2.4E-09 70.1 4.0 34 74-107 50-83 (443)
205 PRK14962 DNA polymerase III su 97.4 0.0012 2.7E-08 64.4 11.2 27 74-100 36-62 (472)
206 PRK14961 DNA polymerase III su 97.4 0.0008 1.7E-08 63.5 9.2 27 74-100 38-64 (363)
207 smart00763 AAA_PrkA PrkA AAA d 97.4 0.00014 3E-09 68.1 4.0 28 73-100 77-104 (361)
208 TIGR01526 nadR_NMN_Atrans nico 97.4 0.00081 1.8E-08 62.6 9.0 31 74-104 162-192 (325)
209 TIGR03709 PPK2_rel_1 polyphosp 97.4 0.0061 1.3E-07 54.9 14.3 164 73-279 55-249 (264)
210 PRK14958 DNA polymerase III su 97.4 0.0014 3E-08 64.7 10.7 28 74-101 38-65 (509)
211 PRK14956 DNA polymerase III su 97.4 0.001 2.2E-08 64.7 9.4 28 74-101 40-67 (484)
212 KOG0733 Nuclear AAA ATPase (VC 97.3 0.0011 2.3E-08 65.5 9.3 38 74-111 545-584 (802)
213 PRK14951 DNA polymerase III su 97.3 0.002 4.2E-08 64.8 11.4 28 74-101 38-65 (618)
214 PF13173 AAA_14: AAA domain 97.3 0.00022 4.7E-09 57.0 3.8 92 74-175 2-103 (128)
215 PHA02575 1 deoxynucleoside mon 97.3 0.00026 5.5E-09 62.1 4.3 38 75-113 1-39 (227)
216 PRK14729 miaA tRNA delta(2)-is 97.3 0.00065 1.4E-08 62.4 7.1 34 75-109 5-38 (300)
217 TIGR02881 spore_V_K stage V sp 97.3 0.00027 5.8E-09 63.6 4.5 26 73-98 41-66 (261)
218 PRK09087 hypothetical protein; 97.3 0.0016 3.4E-08 57.5 9.2 102 75-181 45-165 (226)
219 cd00009 AAA The AAA+ (ATPases 97.3 0.00031 6.6E-09 55.5 4.2 31 74-104 19-52 (151)
220 PRK14952 DNA polymerase III su 97.3 0.0055 1.2E-07 61.3 13.9 28 74-101 35-62 (584)
221 COG4185 Uncharacterized protei 97.3 0.0026 5.7E-08 52.9 9.6 37 74-110 2-40 (187)
222 KOG3062 RNA polymerase II elon 97.3 0.0024 5.3E-08 55.8 9.8 103 75-180 2-122 (281)
223 PRK06645 DNA polymerase III su 97.3 0.0013 2.9E-08 64.6 9.3 29 74-102 43-71 (507)
224 PF03976 PPK2: Polyphosphate k 97.3 0.00095 2.1E-08 59.0 7.4 163 73-278 30-223 (228)
225 PRK14964 DNA polymerase III su 97.3 0.0012 2.5E-08 64.7 8.7 28 74-101 35-62 (491)
226 TIGR00150 HI0065_YjeE ATPase, 97.3 0.00034 7.3E-09 56.7 4.2 28 74-101 22-49 (133)
227 PRK04195 replication factor C 97.3 0.00089 1.9E-08 65.6 7.9 32 74-105 39-70 (482)
228 PRK14960 DNA polymerase III su 97.2 0.0026 5.7E-08 64.0 11.1 28 74-101 37-64 (702)
229 PLN00020 ribulose bisphosphate 97.2 0.0003 6.5E-09 66.1 4.2 38 72-109 146-185 (413)
230 PRK14949 DNA polymerase III su 97.2 0.0021 4.5E-08 66.6 10.5 28 74-101 38-65 (944)
231 TIGR01650 PD_CobS cobaltochela 97.2 0.00029 6.4E-09 65.2 4.0 30 75-104 65-94 (327)
232 PRK14957 DNA polymerase III su 97.2 0.0029 6.4E-08 62.7 11.0 27 74-100 38-64 (546)
233 KOG0739 AAA+-type ATPase [Post 97.2 0.0016 3.5E-08 59.4 8.3 39 75-113 167-207 (439)
234 PRK08099 bifunctional DNA-bind 97.2 0.00032 7E-09 67.0 4.1 34 71-104 216-249 (399)
235 PRK14955 DNA polymerase III su 97.2 0.0017 3.8E-08 62.0 9.0 28 74-101 38-65 (397)
236 PRK14969 DNA polymerase III su 97.2 0.0024 5.2E-08 63.2 10.1 28 74-101 38-65 (527)
237 KOG2702 Predicted panthothenat 97.2 0.0011 2.4E-08 58.2 6.7 114 71-184 116-283 (323)
238 PRK03992 proteasome-activating 97.2 0.00042 9E-09 66.1 4.3 32 73-104 164-195 (389)
239 CHL00181 cbbX CbbX; Provisiona 97.2 0.00068 1.5E-08 62.0 5.5 39 74-112 59-106 (287)
240 KOG0737 AAA+-type ATPase [Post 97.1 0.0027 5.9E-08 59.2 9.3 130 73-281 126-257 (386)
241 TIGR02640 gas_vesic_GvpN gas v 97.1 0.00045 9.8E-09 62.2 4.1 29 76-104 23-51 (262)
242 PRK13342 recombination factor 97.1 0.0017 3.7E-08 62.3 8.2 32 74-105 36-67 (413)
243 PF03266 NTPase_1: NTPase; In 97.1 0.00048 1E-08 58.0 3.9 23 76-98 1-23 (168)
244 PLN02796 D-glycerate 3-kinase 97.1 0.0004 8.7E-09 64.8 3.7 38 72-109 98-140 (347)
245 COG0464 SpoVK ATPases of the A 97.1 0.0026 5.6E-08 62.4 9.6 37 73-109 275-313 (494)
246 PRK05342 clpX ATP-dependent pr 97.1 0.00042 9.1E-09 66.5 3.9 32 75-106 109-140 (412)
247 TIGR03689 pup_AAA proteasome A 97.1 0.0037 8E-08 61.5 10.3 28 74-101 216-243 (512)
248 PRK08691 DNA polymerase III su 97.1 0.0017 3.7E-08 65.7 8.0 28 74-101 38-65 (709)
249 PRK07994 DNA polymerase III su 97.1 0.0016 3.5E-08 65.7 7.8 28 74-101 38-65 (647)
250 PF13245 AAA_19: Part of AAA d 97.1 0.00066 1.4E-08 49.5 3.7 25 74-98 10-35 (76)
251 TIGR00678 holB DNA polymerase 97.1 0.0069 1.5E-07 51.4 10.6 27 74-100 14-40 (188)
252 TIGR01242 26Sp45 26S proteasom 97.1 0.00064 1.4E-08 64.1 4.6 32 74-105 156-187 (364)
253 PF03215 Rad17: Rad17 cell cyc 97.1 0.00068 1.5E-08 66.8 4.8 31 74-104 45-75 (519)
254 PRK12724 flagellar biosynthesi 97.0 0.0021 4.5E-08 61.6 7.8 26 73-98 222-247 (432)
255 PRK12402 replication factor C 97.0 0.0058 1.3E-07 56.4 10.6 24 76-99 38-61 (337)
256 PTZ00454 26S protease regulato 97.0 0.00071 1.5E-08 64.6 4.5 33 73-105 178-210 (398)
257 TIGR02397 dnaX_nterm DNA polym 97.0 0.0037 8E-08 58.3 9.2 27 74-100 36-62 (355)
258 PF13401 AAA_22: AAA domain; P 97.0 0.00059 1.3E-08 54.0 3.4 25 74-98 4-28 (131)
259 TIGR00382 clpX endopeptidase C 97.0 0.00064 1.4E-08 65.1 4.2 31 75-105 117-147 (413)
260 PF07724 AAA_2: AAA domain (Cd 97.0 0.00074 1.6E-08 57.0 4.1 26 75-100 4-29 (171)
261 PRK14965 DNA polymerase III su 97.0 0.0036 7.7E-08 62.7 9.6 28 74-101 38-65 (576)
262 PRK07940 DNA polymerase III su 97.0 0.009 2E-07 57.1 11.9 28 74-101 36-63 (394)
263 PF00910 RNA_helicase: RNA hel 97.0 0.00054 1.2E-08 53.1 2.9 23 77-99 1-23 (107)
264 PF00448 SRP54: SRP54-type pro 97.0 0.00072 1.6E-08 58.4 4.0 25 74-98 1-25 (196)
265 PRK14963 DNA polymerase III su 97.0 0.0053 1.2E-07 60.4 10.5 27 74-100 36-62 (504)
266 TIGR01243 CDC48 AAA family ATP 97.0 0.0051 1.1E-07 63.4 10.6 32 74-105 487-518 (733)
267 PF07726 AAA_3: ATPase family 97.0 0.00048 1E-08 55.3 2.4 29 77-105 2-30 (131)
268 PF05729 NACHT: NACHT domain 97.0 0.00073 1.6E-08 55.3 3.5 23 76-98 2-24 (166)
269 TIGR00635 ruvB Holliday juncti 97.0 0.00098 2.1E-08 61.0 4.6 28 75-102 31-58 (305)
270 PHA02244 ATPase-like protein 96.9 0.00072 1.6E-08 63.6 3.6 36 74-109 119-154 (383)
271 TIGR01241 FtsH_fam ATP-depende 96.9 0.00085 1.9E-08 65.9 4.2 32 74-105 88-119 (495)
272 COG0466 Lon ATP-dependent Lon 96.9 0.00084 1.8E-08 67.3 4.0 32 73-104 349-380 (782)
273 PF01695 IstB_IS21: IstB-like 96.9 0.0027 5.8E-08 53.9 6.7 40 73-112 46-90 (178)
274 PHA03134 thymidine kinase; Pro 96.9 0.027 5.9E-07 52.3 13.6 25 73-97 12-36 (340)
275 TIGR02880 cbbX_cfxQ probable R 96.9 0.0011 2.5E-08 60.4 4.6 25 74-98 58-82 (284)
276 KOG4235 Mitochondrial thymidin 96.9 0.046 1E-06 47.0 13.8 24 159-182 153-176 (244)
277 PRK00080 ruvB Holliday junctio 96.9 0.0011 2.3E-08 61.7 4.4 30 74-103 51-80 (328)
278 PTZ00361 26 proteosome regulat 96.9 0.0011 2.4E-08 64.1 4.6 32 73-104 216-247 (438)
279 PLN03046 D-glycerate 3-kinase; 96.9 0.00081 1.8E-08 64.2 3.6 37 73-109 211-252 (460)
280 TIGR03420 DnaA_homol_Hda DnaA 96.9 0.0012 2.6E-08 57.5 4.3 37 73-109 37-78 (226)
281 KOG0731 AAA+-type ATPase conta 96.9 0.0034 7.3E-08 63.9 7.9 109 72-180 342-493 (774)
282 PRK14950 DNA polymerase III su 96.9 0.011 2.3E-07 59.5 11.5 29 74-102 38-66 (585)
283 KOG0741 AAA+-type ATPase [Post 96.9 0.0032 7E-08 61.3 7.3 72 22-115 226-300 (744)
284 COG1126 GlnQ ABC-type polar am 96.9 0.00091 2E-08 58.3 3.3 23 73-95 27-49 (240)
285 PRK14954 DNA polymerase III su 96.8 0.0097 2.1E-07 60.0 11.0 29 74-102 38-66 (620)
286 PRK10751 molybdopterin-guanine 96.8 0.0014 3E-08 55.5 4.3 27 73-99 5-31 (173)
287 KOG2004 Mitochondrial ATP-depe 96.8 0.0011 2.3E-08 66.5 3.9 42 68-109 432-475 (906)
288 PF02367 UPF0079: Uncharacteri 96.8 0.0016 3.4E-08 52.0 4.2 29 73-101 14-42 (123)
289 PF01712 dNK: Deoxynucleoside 96.8 0.0015 3.2E-08 53.6 4.1 26 157-182 64-90 (146)
290 PRK13695 putative NTPase; Prov 96.8 0.0013 2.7E-08 55.3 3.7 24 75-98 1-24 (174)
291 TIGR03015 pepcterm_ATPase puta 96.8 0.0012 2.7E-08 59.0 3.7 26 74-99 43-68 (269)
292 PRK06647 DNA polymerase III su 96.8 0.0064 1.4E-07 60.7 9.1 28 74-101 38-65 (563)
293 PRK06620 hypothetical protein; 96.8 0.0011 2.4E-08 58.0 3.3 30 75-104 45-74 (214)
294 PF08477 Miro: Miro-like prote 96.8 0.0015 3.2E-08 50.7 3.6 23 76-98 1-23 (119)
295 KOG0735 AAA+-type ATPase [Post 96.8 0.0071 1.5E-07 60.9 9.0 36 74-109 701-738 (952)
296 PRK07952 DNA replication prote 96.8 0.0071 1.5E-07 54.0 8.3 100 75-181 100-217 (244)
297 COG1116 TauB ABC-type nitrate/ 96.7 0.0012 2.5E-08 58.7 3.2 26 73-98 28-53 (248)
298 cd01131 PilT Pilus retraction 96.7 0.0014 3E-08 56.6 3.6 24 76-99 3-26 (198)
299 PRK08903 DnaA regulatory inact 96.7 0.002 4.4E-08 56.4 4.8 35 75-109 43-82 (227)
300 PRK11784 tRNA 2-selenouridine 96.7 0.0072 1.6E-07 56.7 8.7 104 74-181 141-257 (345)
301 COG4619 ABC-type uncharacteriz 96.7 0.0012 2.7E-08 55.5 3.1 26 73-98 28-53 (223)
302 COG1222 RPT1 ATP-dependent 26S 96.7 0.002 4.4E-08 59.9 4.8 45 73-117 184-230 (406)
303 PHA02544 44 clamp loader, smal 96.7 0.018 3.9E-07 52.9 11.2 30 74-103 43-72 (316)
304 TIGR03708 poly_P_AMP_trns poly 96.7 0.044 9.6E-07 53.7 14.2 151 71-264 296-474 (493)
305 PRK14948 DNA polymerase III su 96.7 0.013 2.9E-07 59.1 11.0 27 75-101 39-65 (620)
306 cd00820 PEPCK_HprK Phosphoenol 96.7 0.0015 3.3E-08 50.8 3.4 34 74-109 15-48 (107)
307 PRK08181 transposase; Validate 96.7 0.006 1.3E-07 55.3 7.7 40 73-112 105-149 (269)
308 PRK07133 DNA polymerase III su 96.7 0.012 2.6E-07 60.0 10.6 29 74-102 40-68 (725)
309 PRK05896 DNA polymerase III su 96.7 0.0065 1.4E-07 60.7 8.5 27 74-100 38-64 (605)
310 KOG1533 Predicted GTPase [Gene 96.7 0.0051 1.1E-07 54.2 6.7 22 77-98 5-26 (290)
311 KOG0734 AAA+-type ATPase conta 96.7 0.0058 1.3E-07 59.7 7.7 32 73-104 336-367 (752)
312 KOG0738 AAA+-type ATPase [Post 96.7 0.016 3.5E-07 54.6 10.4 30 76-105 247-276 (491)
313 KOG1969 DNA replication checkp 96.7 0.0044 9.6E-08 62.4 7.0 32 74-105 326-357 (877)
314 COG3911 Predicted ATPase [Gene 96.7 0.0021 4.6E-08 52.8 4.0 29 73-102 8-36 (183)
315 PF03029 ATP_bind_1: Conserved 96.7 0.0012 2.6E-08 58.7 2.8 21 79-99 1-21 (238)
316 COG3839 MalK ABC-type sugar tr 96.7 0.0014 2.9E-08 61.1 3.2 25 73-97 28-52 (338)
317 PF03308 ArgK: ArgK protein; 96.7 0.002 4.4E-08 57.6 4.1 26 73-98 28-53 (266)
318 PRK06893 DNA replication initi 96.7 0.0023 5E-08 56.4 4.5 32 75-106 40-76 (229)
319 CHL00176 ftsH cell division pr 96.7 0.0019 4.2E-08 65.2 4.5 32 74-105 216-247 (638)
320 COG1219 ClpX ATP-dependent pro 96.7 0.0019 4.1E-08 59.3 4.0 33 75-107 98-130 (408)
321 PRK09111 DNA polymerase III su 96.7 0.02 4.4E-07 57.5 11.7 29 74-102 46-74 (598)
322 cd03115 SRP The signal recogni 96.7 0.0019 4E-08 54.1 3.7 23 76-98 2-24 (173)
323 TIGR00101 ureG urease accessor 96.7 0.002 4.3E-08 55.7 4.0 25 74-98 1-25 (199)
324 PRK08084 DNA replication initi 96.7 0.0021 4.5E-08 57.0 4.2 33 75-107 46-83 (235)
325 cd01120 RecA-like_NTPases RecA 96.6 0.0016 3.4E-08 52.9 3.1 23 76-98 1-23 (165)
326 PRK08116 hypothetical protein; 96.6 0.014 3.1E-07 52.8 9.6 38 75-112 115-157 (268)
327 COG2255 RuvB Holliday junction 96.6 0.0018 3.9E-08 58.6 3.7 27 76-102 54-80 (332)
328 PRK09435 membrane ATPase/prote 96.6 0.0021 4.5E-08 59.9 4.3 27 72-98 54-80 (332)
329 PF13191 AAA_16: AAA ATPase do 96.6 0.0017 3.6E-08 54.3 3.4 26 73-98 23-48 (185)
330 KOG1970 Checkpoint RAD17-RFC c 96.6 0.0017 3.7E-08 63.3 3.7 31 74-104 110-140 (634)
331 TIGR00064 ftsY signal recognit 96.6 0.0023 4.9E-08 58.1 4.3 27 72-98 70-96 (272)
332 COG4240 Predicted kinase [Gene 96.6 0.0026 5.5E-08 55.9 4.3 38 72-109 48-91 (300)
333 PRK06835 DNA replication prote 96.6 0.013 2.8E-07 54.7 9.3 38 75-112 184-226 (329)
334 PRK14959 DNA polymerase III su 96.6 0.017 3.6E-07 58.1 10.5 28 74-101 38-65 (624)
335 cd01918 HprK_C HprK/P, the bif 96.6 0.0022 4.8E-08 52.9 3.5 32 74-106 14-45 (149)
336 PRK15455 PrkA family serine pr 96.6 0.0018 4E-08 64.1 3.5 26 73-98 102-127 (644)
337 PF03205 MobB: Molybdopterin g 96.6 0.0024 5.2E-08 52.1 3.7 24 75-98 1-24 (140)
338 PTZ00202 tuzin; Provisional 96.6 0.012 2.5E-07 56.8 8.7 43 73-115 285-332 (550)
339 COG1223 Predicted ATPase (AAA+ 96.5 0.002 4.2E-08 57.8 3.3 37 73-109 150-188 (368)
340 PRK10416 signal recognition pa 96.5 0.0027 5.8E-08 58.9 4.2 26 73-98 113-138 (318)
341 TIGR00763 lon ATP-dependent pr 96.5 0.0027 5.9E-08 65.8 4.6 32 73-104 346-377 (775)
342 COG3842 PotA ABC-type spermidi 96.5 0.0019 4.2E-08 60.4 3.2 23 74-96 31-53 (352)
343 PRK06526 transposase; Provisio 96.5 0.0032 6.9E-08 56.6 4.5 41 72-112 96-141 (254)
344 PRK14974 cell division protein 96.5 0.0028 6.1E-08 59.2 4.2 26 73-98 139-164 (336)
345 PRK00440 rfc replication facto 96.5 0.024 5.2E-07 51.8 10.3 23 76-98 40-62 (319)
346 PLN03025 replication factor C 96.5 0.0028 6E-08 58.7 4.0 23 76-98 36-58 (319)
347 PRK05563 DNA polymerase III su 96.5 0.011 2.4E-07 58.9 8.5 29 74-102 38-66 (559)
348 COG2087 CobU Adenosyl cobinami 96.5 0.016 3.4E-07 48.5 7.8 82 75-171 1-86 (175)
349 TIGR01618 phage_P_loop phage n 96.5 0.0022 4.8E-08 56.3 3.0 34 73-108 11-44 (220)
350 PRK09183 transposase/IS protei 96.4 0.0037 8.1E-08 56.3 4.5 38 73-110 101-143 (259)
351 PF06309 Torsin: Torsin; Inte 96.4 0.0046 9.9E-08 49.5 4.4 29 70-98 49-77 (127)
352 PRK12377 putative replication 96.4 0.004 8.6E-08 55.8 4.6 38 75-112 102-144 (248)
353 PRK14088 dnaA chromosomal repl 96.4 0.014 3E-07 56.6 8.6 37 76-112 132-175 (440)
354 TIGR01243 CDC48 AAA family ATP 96.4 0.0028 6.2E-08 65.2 4.1 31 74-104 212-242 (733)
355 cd04163 Era Era subfamily. Er 96.4 0.0029 6.3E-08 51.0 3.4 23 74-96 3-25 (168)
356 COG0714 MoxR-like ATPases [Gen 96.4 0.0031 6.8E-08 58.6 4.0 30 75-104 44-73 (329)
357 TIGR03499 FlhF flagellar biosy 96.4 0.0034 7.3E-08 57.3 4.0 26 73-98 193-218 (282)
358 cd03116 MobB Molybdenum is an 96.4 0.0037 8E-08 52.2 3.9 24 75-98 2-25 (159)
359 PHA03135 thymidine kinase; Pro 96.4 0.13 2.9E-06 47.9 14.4 25 73-97 9-33 (343)
360 cd01130 VirB11-like_ATPase Typ 96.4 0.0032 6.8E-08 53.7 3.5 25 74-98 25-49 (186)
361 cd01124 KaiC KaiC is a circadi 96.4 0.0033 7.1E-08 52.9 3.6 30 77-106 2-36 (187)
362 TIGR00073 hypB hydrogenase acc 96.4 0.0034 7.4E-08 54.3 3.8 29 71-99 19-47 (207)
363 COG1484 DnaC DNA replication p 96.4 0.0098 2.1E-07 53.4 6.8 40 73-112 104-148 (254)
364 COG1136 SalX ABC-type antimicr 96.4 0.0029 6.3E-08 55.7 3.3 25 73-97 30-54 (226)
365 PRK05564 DNA polymerase III su 96.4 0.013 2.9E-07 54.0 7.8 71 74-147 26-101 (313)
366 cd04155 Arl3 Arl3 subfamily. 96.4 0.0034 7.3E-08 51.9 3.5 25 73-97 13-37 (173)
367 COG1855 ATPase (PilT family) [ 96.4 0.0028 6.1E-08 60.6 3.3 23 76-98 265-287 (604)
368 KOG0745 Putative ATP-dependent 96.3 0.0045 9.7E-08 59.0 4.5 34 75-108 227-260 (564)
369 PRK06305 DNA polymerase III su 96.3 0.032 7E-07 54.3 10.5 28 74-101 39-66 (451)
370 PF00005 ABC_tran: ABC transpo 96.3 0.0029 6.4E-08 50.5 2.8 25 74-98 11-35 (137)
371 PRK11034 clpA ATP-dependent Cl 96.3 0.0033 7.2E-08 64.7 3.8 30 75-104 489-518 (758)
372 PRK13768 GTPase; Provisional 96.3 0.004 8.7E-08 55.8 3.8 25 74-98 2-26 (253)
373 PRK05707 DNA polymerase III su 96.3 0.04 8.6E-07 51.4 10.5 28 74-101 22-49 (328)
374 PRK14970 DNA polymerase III su 96.3 0.034 7.3E-07 52.4 10.2 27 74-100 39-65 (367)
375 PHA02624 large T antigen; Prov 96.3 0.005 1.1E-07 61.3 4.6 33 73-105 430-462 (647)
376 KOG0991 Replication factor C, 96.3 0.0037 8E-08 55.2 3.3 28 71-98 45-72 (333)
377 COG1419 FlhF Flagellar GTP-bin 96.3 0.01 2.2E-07 56.4 6.4 37 73-109 202-245 (407)
378 PF01926 MMR_HSR1: 50S ribosom 96.3 0.0043 9.2E-08 48.2 3.3 21 76-96 1-21 (116)
379 PRK14722 flhF flagellar biosyn 96.2 0.0043 9.4E-08 58.7 3.9 26 73-98 136-161 (374)
380 PRK13341 recombination factor 96.2 0.005 1.1E-07 63.1 4.7 34 74-107 52-85 (725)
381 TIGR00176 mobB molybdopterin-g 96.2 0.004 8.7E-08 51.7 3.3 23 76-98 1-23 (155)
382 TIGR02012 tigrfam_recA protein 96.2 0.016 3.5E-07 53.8 7.5 37 73-109 54-95 (321)
383 COG1220 HslU ATP-dependent pro 96.2 0.0051 1.1E-07 57.0 4.0 31 74-104 50-80 (444)
384 PRK14953 DNA polymerase III su 96.2 0.055 1.2E-06 53.2 11.5 27 74-100 38-64 (486)
385 PF01078 Mg_chelatase: Magnesi 96.2 0.0038 8.2E-08 54.2 3.0 25 74-98 22-46 (206)
386 COG1703 ArgK Putative periplas 96.2 0.0047 1E-07 56.3 3.7 28 71-98 48-75 (323)
387 COG1117 PstB ABC-type phosphat 96.2 0.0043 9.2E-08 54.1 3.3 27 72-98 31-57 (253)
388 KOG0743 AAA+-type ATPase [Post 96.2 0.0039 8.4E-08 59.6 3.3 29 77-105 238-266 (457)
389 cd00983 recA RecA is a bacter 96.2 0.02 4.4E-07 53.2 7.9 35 73-107 54-93 (325)
390 PF13086 AAA_11: AAA domain; P 96.2 0.0048 1E-07 53.2 3.5 23 76-98 19-41 (236)
391 TIGR01425 SRP54_euk signal rec 96.2 0.0056 1.2E-07 58.9 4.3 27 72-98 98-124 (429)
392 TIGR00750 lao LAO/AO transport 96.2 0.0061 1.3E-07 56.0 4.4 26 73-98 33-58 (300)
393 PRK10867 signal recognition pa 96.2 0.0057 1.2E-07 59.1 4.3 27 72-98 98-124 (433)
394 PRK14086 dnaA chromosomal repl 96.1 0.014 3.1E-07 58.4 7.1 36 77-112 317-359 (617)
395 PRK04296 thymidine kinase; Pro 96.1 0.0053 1.2E-07 52.5 3.7 24 75-98 3-26 (190)
396 PRK12422 chromosomal replicati 96.1 0.02 4.2E-07 55.7 8.0 35 76-110 143-182 (445)
397 COG1124 DppF ABC-type dipeptid 96.1 0.0045 9.7E-08 54.8 3.2 25 74-98 33-57 (252)
398 PF04665 Pox_A32: Poxvirus A32 96.1 0.0055 1.2E-07 54.5 3.8 26 73-98 12-37 (241)
399 PRK10646 ADP-binding protein; 96.1 0.0071 1.5E-07 50.1 4.2 27 74-100 28-54 (153)
400 PRK00771 signal recognition pa 96.1 0.0056 1.2E-07 59.2 4.1 27 72-98 93-119 (437)
401 smart00173 RAS Ras subfamily o 96.1 0.005 1.1E-07 50.3 3.3 21 76-96 2-22 (164)
402 PF06068 TIP49: TIP49 C-termin 96.1 0.0059 1.3E-07 57.4 4.1 36 74-109 50-89 (398)
403 PRK00149 dnaA chromosomal repl 96.1 0.031 6.6E-07 54.3 9.3 36 76-111 150-192 (450)
404 CHL00206 ycf2 Ycf2; Provisiona 96.1 0.0056 1.2E-07 67.6 4.4 37 73-109 1629-1667(2281)
405 TIGR02639 ClpA ATP-dependent C 96.1 0.014 3.1E-07 60.1 7.2 25 74-98 203-227 (731)
406 PF13479 AAA_24: AAA domain 96.1 0.0042 9.2E-08 54.1 2.9 30 73-105 2-31 (213)
407 PRK10787 DNA-binding ATP-depen 96.1 0.0061 1.3E-07 63.1 4.5 32 73-104 348-379 (784)
408 KOG0727 26S proteasome regulat 96.1 0.0079 1.7E-07 53.8 4.5 45 73-117 188-234 (408)
409 PRK14490 putative bifunctional 96.1 0.0058 1.3E-07 57.8 4.0 27 73-99 4-30 (369)
410 cd04138 H_N_K_Ras_like H-Ras/N 96.1 0.0057 1.2E-07 49.5 3.5 22 75-96 2-23 (162)
411 TIGR01166 cbiO cobalt transpor 96.1 0.0055 1.2E-07 52.1 3.5 26 73-98 17-42 (190)
412 cd03292 ABC_FtsE_transporter F 96.1 0.0054 1.2E-07 53.0 3.5 26 73-98 26-51 (214)
413 cd03255 ABC_MJ0796_Lo1CDE_FtsE 96.1 0.0055 1.2E-07 53.2 3.5 26 73-98 29-54 (218)
414 PRK08058 DNA polymerase III su 96.1 0.025 5.5E-07 52.7 8.1 28 74-101 28-55 (329)
415 PF00437 T2SE: Type II/IV secr 96.1 0.0061 1.3E-07 54.8 3.9 26 74-99 127-152 (270)
416 PRK08451 DNA polymerase III su 96.1 0.026 5.7E-07 55.8 8.5 26 74-99 36-61 (535)
417 PHA03133 thymidine kinase; Pro 96.1 0.47 1E-05 44.6 16.2 27 73-99 39-65 (368)
418 TIGR00960 3a0501s02 Type II (G 96.1 0.0056 1.2E-07 53.1 3.5 26 73-98 28-53 (216)
419 PRK11331 5-methylcytosine-spec 96.1 0.0052 1.1E-07 59.3 3.5 26 74-99 194-219 (459)
420 COG0541 Ffh Signal recognition 96.1 0.027 5.8E-07 53.9 8.1 28 71-98 97-124 (451)
421 TIGR00959 ffh signal recogniti 96.0 0.0069 1.5E-07 58.4 4.3 27 72-98 97-123 (428)
422 PRK14971 DNA polymerase III su 96.0 0.052 1.1E-06 54.8 10.7 28 74-101 39-66 (614)
423 cd01394 radB RadB. The archaea 96.0 0.0073 1.6E-07 52.4 4.1 33 73-105 18-55 (218)
424 PF13555 AAA_29: P-loop contai 96.0 0.0068 1.5E-07 42.4 3.1 23 75-97 24-46 (62)
425 KOG0736 Peroxisome assembly fa 96.0 0.035 7.6E-07 56.5 9.2 34 76-109 707-742 (953)
426 PRK13851 type IV secretion sys 96.0 0.0049 1.1E-07 57.8 3.1 27 73-99 161-187 (344)
427 cd04119 RJL RJL (RabJ-Like) su 96.0 0.006 1.3E-07 49.7 3.3 22 76-97 2-23 (168)
428 cd03225 ABC_cobalt_CbiO_domain 96.0 0.0063 1.4E-07 52.5 3.6 26 73-98 26-51 (211)
429 cd03264 ABC_drug_resistance_li 96.0 0.0058 1.3E-07 52.8 3.3 23 76-98 27-49 (211)
430 PF01443 Viral_helicase1: Vira 96.0 0.0047 1E-07 53.9 2.7 22 77-98 1-22 (234)
431 PRK08939 primosomal protein Dn 96.0 0.026 5.6E-07 52.1 7.7 39 74-112 156-199 (306)
432 TIGR02237 recomb_radB DNA repa 96.0 0.0083 1.8E-07 51.7 4.2 34 73-106 11-49 (209)
433 cd03224 ABC_TM1139_LivF_branch 96.0 0.0066 1.4E-07 52.8 3.5 26 73-98 25-50 (222)
434 TIGR02673 FtsE cell division A 96.0 0.0066 1.4E-07 52.5 3.5 26 73-98 27-52 (214)
435 cd03230 ABC_DR_subfamily_A Thi 96.0 0.0064 1.4E-07 51.0 3.3 26 73-98 25-50 (173)
436 cd03263 ABC_subfamily_A The AB 96.0 0.0068 1.5E-07 52.7 3.5 26 73-98 27-52 (220)
437 cd03256 ABC_PhnC_transporter A 96.0 0.0066 1.4E-07 53.5 3.5 26 73-98 26-51 (241)
438 PRK13833 conjugal transfer pro 96.0 0.0069 1.5E-07 56.3 3.7 25 74-98 144-168 (323)
439 cd01983 Fer4_NifH The Fer4_Nif 96.0 0.0075 1.6E-07 44.3 3.3 30 76-105 1-33 (99)
440 cd03219 ABC_Mj1267_LivG_branch 96.0 0.0062 1.3E-07 53.5 3.3 26 73-98 25-50 (236)
441 TIGR03608 L_ocin_972_ABC putat 95.9 0.0064 1.4E-07 52.2 3.3 26 73-98 23-48 (206)
442 cd03261 ABC_Org_Solvent_Resist 95.9 0.0068 1.5E-07 53.3 3.5 26 73-98 25-50 (235)
443 cd03269 ABC_putative_ATPase Th 95.9 0.007 1.5E-07 52.2 3.5 26 73-98 25-50 (210)
444 smart00175 RAB Rab subfamily o 95.9 0.0066 1.4E-07 49.4 3.2 22 75-96 1-22 (164)
445 cd03262 ABC_HisP_GlnQ_permease 95.9 0.007 1.5E-07 52.3 3.5 26 73-98 25-50 (213)
446 PRK04328 hypothetical protein; 95.9 0.03 6.4E-07 50.1 7.6 33 73-105 22-59 (249)
447 cd04113 Rab4 Rab4 subfamily. 95.9 0.0068 1.5E-07 49.4 3.3 22 75-96 1-22 (161)
448 PRK11889 flhF flagellar biosyn 95.9 0.0079 1.7E-07 57.3 4.0 26 73-98 240-265 (436)
449 TIGR00231 small_GTP small GTP- 95.9 0.0075 1.6E-07 47.8 3.4 23 75-97 2-24 (161)
450 TIGR02639 ClpA ATP-dependent C 95.9 0.0088 1.9E-07 61.6 4.7 34 76-109 486-521 (731)
451 cd03260 ABC_PstB_phosphate_tra 95.9 0.0076 1.6E-07 52.7 3.7 26 73-98 25-50 (227)
452 cd03283 ABC_MutS-like MutS-lik 95.9 0.0066 1.4E-07 52.4 3.3 22 75-96 26-47 (199)
453 TIGR02315 ABC_phnC phosphonate 95.9 0.007 1.5E-07 53.4 3.5 26 73-98 27-52 (243)
454 cd03226 ABC_cobalt_CbiO_domain 95.9 0.007 1.5E-07 52.1 3.4 26 73-98 25-50 (205)
455 cd03229 ABC_Class3 This class 95.9 0.0076 1.6E-07 50.8 3.5 26 73-98 25-50 (178)
456 COG1120 FepC ABC-type cobalami 95.9 0.0071 1.5E-07 54.3 3.5 36 73-108 27-66 (258)
457 PRK05642 DNA replication initi 95.9 0.01 2.2E-07 52.6 4.4 35 75-109 46-85 (234)
458 TIGR02782 TrbB_P P-type conjug 95.9 0.0075 1.6E-07 55.5 3.7 25 74-98 132-156 (299)
459 cd04139 RalA_RalB RalA/RalB su 95.9 0.007 1.5E-07 49.2 3.2 21 76-96 2-22 (164)
460 cd03293 ABC_NrtD_SsuB_transpor 95.9 0.0067 1.5E-07 52.8 3.3 26 73-98 29-54 (220)
461 cd03301 ABC_MalK_N The N-termi 95.9 0.0075 1.6E-07 52.1 3.6 26 73-98 25-50 (213)
462 cd04136 Rap_like Rap-like subf 95.9 0.0078 1.7E-07 49.0 3.5 22 75-96 2-23 (163)
463 TIGR02211 LolD_lipo_ex lipopro 95.9 0.0075 1.6E-07 52.4 3.5 26 73-98 30-55 (221)
464 cd03235 ABC_Metallic_Cations A 95.9 0.0068 1.5E-07 52.5 3.2 26 73-98 24-49 (213)
465 COG1224 TIP49 DNA helicase TIP 95.9 0.011 2.3E-07 55.3 4.6 31 74-104 65-97 (450)
466 PRK12723 flagellar biosynthesi 95.9 0.0086 1.9E-07 57.0 4.1 26 73-98 173-198 (388)
467 cd03258 ABC_MetN_methionine_tr 95.9 0.0076 1.6E-07 52.9 3.5 26 73-98 30-55 (233)
468 cd03259 ABC_Carb_Solutes_like 95.9 0.0077 1.7E-07 52.1 3.5 26 73-98 25-50 (213)
469 PRK10733 hflB ATP-dependent me 95.9 0.0072 1.6E-07 61.3 3.8 31 75-105 186-216 (644)
470 cd00876 Ras Ras family. The R 95.9 0.0065 1.4E-07 49.1 2.8 21 76-96 1-21 (160)
471 cd03296 ABC_CysA_sulfate_impor 95.9 0.0078 1.7E-07 53.1 3.5 26 73-98 27-52 (239)
472 PRK11629 lolD lipoprotein tran 95.9 0.0079 1.7E-07 52.9 3.5 26 73-98 34-59 (233)
473 COG0802 Predicted ATPase or ki 95.8 0.011 2.3E-07 48.7 4.0 28 73-100 24-51 (149)
474 cd03238 ABC_UvrA The excision 95.8 0.0081 1.7E-07 50.9 3.4 24 73-96 20-43 (176)
475 PRK14493 putative bifunctional 95.8 0.0088 1.9E-07 54.3 3.8 24 75-98 2-25 (274)
476 COG2812 DnaX DNA polymerase II 95.8 0.01 2.2E-07 58.3 4.4 28 75-102 39-66 (515)
477 cd03265 ABC_DrrA DrrA is the A 95.8 0.0083 1.8E-07 52.2 3.6 26 73-98 25-50 (220)
478 cd03232 ABC_PDR_domain2 The pl 95.8 0.0081 1.7E-07 51.3 3.4 24 73-96 32-55 (192)
479 cd03247 ABCC_cytochrome_bd The 95.8 0.0086 1.9E-07 50.4 3.5 26 73-98 27-52 (178)
480 cd01862 Rab7 Rab7 subfamily. 95.8 0.0076 1.6E-07 49.5 3.1 22 76-97 2-23 (172)
481 cd03222 ABC_RNaseL_inhibitor T 95.8 0.0081 1.8E-07 51.0 3.3 26 73-98 24-49 (177)
482 TIGR03410 urea_trans_UrtE urea 95.8 0.0081 1.8E-07 52.6 3.4 26 73-98 25-50 (230)
483 PRK15177 Vi polysaccharide exp 95.8 0.0083 1.8E-07 52.2 3.5 26 73-98 12-37 (213)
484 PRK13541 cytochrome c biogenes 95.8 0.0086 1.9E-07 51.2 3.5 25 74-98 26-50 (195)
485 PRK10463 hydrogenase nickel in 95.8 0.0095 2.1E-07 54.4 3.9 26 73-98 103-128 (290)
486 PRK13894 conjugal transfer ATP 95.8 0.0086 1.9E-07 55.6 3.7 26 73-98 147-172 (319)
487 cd00157 Rho Rho (Ras homology) 95.8 0.0082 1.8E-07 49.3 3.3 23 75-97 1-23 (171)
488 cd04177 RSR1 RSR1 subgroup. R 95.8 0.0088 1.9E-07 49.4 3.5 22 75-96 2-23 (168)
489 cd04137 RheB Rheb (Ras Homolog 95.8 0.0088 1.9E-07 49.9 3.5 22 75-96 2-23 (180)
490 cd03246 ABCC_Protease_Secretio 95.8 0.0091 2E-07 50.1 3.6 26 73-98 27-52 (173)
491 TIGR03864 PQQ_ABC_ATP ABC tran 95.8 0.0085 1.8E-07 52.8 3.5 26 73-98 26-51 (236)
492 PRK11264 putative amino-acid A 95.8 0.0085 1.8E-07 53.2 3.5 26 73-98 28-53 (250)
493 PF00025 Arf: ADP-ribosylation 95.8 0.01 2.2E-07 50.0 3.8 25 72-96 12-36 (175)
494 cd03223 ABCD_peroxisomal_ALDP 95.8 0.0091 2E-07 49.8 3.5 26 73-98 26-51 (166)
495 PRK10247 putative ABC transpor 95.8 0.0087 1.9E-07 52.4 3.5 26 73-98 32-57 (225)
496 KOG2028 ATPase related to the 95.8 0.007 1.5E-07 56.7 3.0 25 75-99 163-187 (554)
497 PF00308 Bac_DnaA: Bacterial d 95.8 0.093 2E-06 46.0 10.0 34 77-110 37-77 (219)
498 cd03257 ABC_NikE_OppD_transpor 95.8 0.0084 1.8E-07 52.3 3.4 26 73-98 30-55 (228)
499 TIGR01978 sufC FeS assembly AT 95.8 0.0084 1.8E-07 52.9 3.4 25 73-97 25-49 (243)
500 PF03193 DUF258: Protein of un 95.8 0.0095 2.1E-07 49.8 3.5 24 75-98 36-59 (161)
No 1
>PLN02459 probable adenylate kinase
Probab=100.00 E-value=2.4e-41 Score=300.75 Aligned_cols=219 Identities=79% Similarity=1.349 Sum_probs=199.6
Q ss_pred CCCCceEEEEEcCCCCCHHHHHHHHHHHhCCCeeehHHHH--------------HHHHHcCCccCHHHHHHHHHHHHHcc
Q 022951 70 GEGKHVQWVFLGCPGVGKGTYASRLSNLLGVPHIATGDLL--------------DEIVSQGKLVSDEIIINLLSKRLEAG 135 (289)
Q Consensus 70 ~~~~~~~Ivl~GppGsGKSTlak~La~~lg~~~i~~d~l~--------------~~~l~~g~~v~~~~~~~ll~~~l~~~ 135 (289)
..+++|+|+|+|||||||||+|+.|++.||+.|+++++++ +.++.+|..+|++++..++.+.+...
T Consensus 25 ~~~~~~~ii~~G~PGsGK~T~a~~la~~~~~~~is~gdllR~ei~~~t~lg~~i~~~~~~G~lVPdeiv~~ll~~~l~~~ 104 (261)
T PLN02459 25 AKGRNVNWVFLGCPGVGKGTYASRLSKLLGVPHIATGDLVREEIKSSGPLGAQLKEIVNQGKLVPDEIIFSLLSKRLEAG 104 (261)
T ss_pred cccCccEEEEECCCCCCHHHHHHHHHHHhCCcEEeCcHHHHHHHhccchhHHHHHHHHHcCCccCHHHHHHHHHHHHhcc
Confidence 3345688999999999999999999999999999999998 46778999999999999999999865
Q ss_pred cccCCceEEEcCcccH----HHHhhcCCCcEEEEEecCHHHHHHHHhcccccccCCCccccccccccCCCCCCCCCCCCC
Q 022951 136 EAKGEAGFILDGFPRT----EILEGVTDIDLVINLKLREEALLAKCLGRRICSECGGNYNVACIDIKGENGNPGMYMGPL 211 (289)
Q Consensus 136 ~~~~~~g~Ildg~p~~----~~l~~~~~~d~vI~Ld~~~e~l~~Rl~~R~~~~~~g~~y~~~~~~~~~~~~~~~~~~~~~ 211 (289)
......||||||||++ +.|+.+..++.||+|++|.+++++|+.+|+.|+.||..||...+..+++++.+.+++|+.
T Consensus 105 ~~~~~~g~iLDGFPRt~~Qa~~Le~~~~id~Vi~L~v~d~~l~~Rl~gR~~~~~~g~~Yn~~~~~~~~~~~~~~~~~~p~ 184 (261)
T PLN02459 105 EEEGESGFILDGFPRTVRQAEILEGVTDIDLVVNLKLREEVLVEKCLGRRICSECGKNFNVADIDLKGEDGRPGIVMPPL 184 (261)
T ss_pred cccCCceEEEeCCCCCHHHHHHHHhcCCCCEEEEEECCHHHHHHHhhccccccccCccccccccccccccccccccCCCC
Confidence 3222579999999999 556666678999999999999999999999999999999999888899999999999999
Q ss_pred CCCCccccCccccCCCcHHHHHHHHHHHHHhchHHHHHHHHcCcEEEEeCCCCcccHHHHHHHHhccCCcchhhhhcC
Q 022951 212 LPPPHCASKLITRSDDKEEVVRERLRIYNEKSRPVEEFYRRRGKLLEFDLPGGIPESWPKLLQALNLEDPEDKQSAAA 289 (289)
Q Consensus 212 ~~~~~~~~~L~~r~~d~~~~~~~rl~~y~~~~~~l~~~y~~~~~l~~id~~~~~~ev~~~i~~~l~~~~~~~~~~~~~ 289 (289)
.++..|.++|++|.||+++.+++||+.|+++..++.+||.+.++++.||++++++++|++|.++|+.. +++|+++||
T Consensus 185 ~~~~~~~~~L~~R~DD~~e~i~kRL~~Y~~~t~pv~~~Y~~~g~l~~id~~~~~~eV~~~i~~~l~~~-~~~~~~~~~ 261 (261)
T PLN02459 185 LPPPECASKLITRADDTEEVVKARLRVYKEESQPVEDFYRKRGKLLEFELPGGIPETWPRLLQALNLD-DEDKRSAAA 261 (261)
T ss_pred CCCcccccccccCCCCCHHHHHHHHHHHHHHhHHHHHHHHhcCCeEEEeCCCCHHHHHHHHHHHhchh-hhhhhcccC
Confidence 99899999999999999999999999999999999999999999999999999999999999999887 577777775
No 2
>PLN02674 adenylate kinase
Probab=100.00 E-value=4.9e-36 Score=265.48 Aligned_cols=188 Identities=30% Similarity=0.603 Sum_probs=165.1
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHHHhCCCeeehHHHH--------------HHHHHcCCccCHHHHHHHHHHHHHcccccC
Q 022951 74 HVQWVFLGCPGVGKGTYASRLSNLLGVPHIATGDLL--------------DEIVSQGKLVSDEIIINLLSKRLEAGEAKG 139 (289)
Q Consensus 74 ~~~Ivl~GppGsGKSTlak~La~~lg~~~i~~d~l~--------------~~~l~~g~~v~~~~~~~ll~~~l~~~~~~~ 139 (289)
.++|+|+|||||||||+|+.|+++||+.|+++++++ ++++..|+.+|++++..++.+.+....+
T Consensus 31 ~~~i~l~G~PGsGKgT~a~~La~~~~~~his~GdllR~~i~~~s~~g~~i~~~~~~G~lvpd~iv~~lv~~~l~~~~~-- 108 (244)
T PLN02674 31 DKRLILIGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMKKPSC-- 108 (244)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHcCCcEEchhHHHHHHHhccChhhHHHHHHHHcCCccCHHHHHHHHHHHHhCcCc--
Confidence 367899999999999999999999999999999999 3567889999999999999999987654
Q ss_pred CceEEEcCcccH----HHHhhc-----CCCcEEEEEecCHHHHHHHHhcccccccCCCccccccccccCCCCCCCCCCCC
Q 022951 140 EAGFILDGFPRT----EILEGV-----TDIDLVINLKLREEALLAKCLGRRICSECGGNYNVACIDIKGENGNPGMYMGP 210 (289)
Q Consensus 140 ~~g~Ildg~p~~----~~l~~~-----~~~d~vI~Ld~~~e~l~~Rl~~R~~~~~~g~~y~~~~~~~~~~~~~~~~~~~~ 210 (289)
..||||||||++ +.|+.+ ..++.+|+|++|.+.+++|+.+|+.|+.||..||.. +.||
T Consensus 109 ~~g~ilDGfPRt~~Qa~~l~~~l~~~~~~~d~vi~l~v~~~~l~~Rl~gR~~~~~~g~~yn~~-------------~~pp 175 (244)
T PLN02674 109 QKGFILDGFPRTVVQAQKLDEMLAKQGAKIDKVLNFAIDDAILEERITGRWIHPSSGRTYHTK-------------FAPP 175 (244)
T ss_pred CCcEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHhccccccccCCccccc-------------cCCC
Confidence 369999999999 334332 358999999999999999999999999999999985 2222
Q ss_pred CCC--CCccccCccccCCCcHHHHHHHHHHHHHhchHHHHHHHHcCcEEEEeCCCCcccHHHHHHHHh
Q 022951 211 LLP--PPHCASKLITRSDDKEEVVRERLRIYNEKSRPVEEFYRRRGKLLEFDLPGGIPESWPKLLQAL 276 (289)
Q Consensus 211 ~~~--~~~~~~~L~~r~~d~~~~~~~rl~~y~~~~~~l~~~y~~~~~l~~id~~~~~~ev~~~i~~~l 276 (289)
-.+ +..|+++|++|.||+++.+++||+.|++...++++||.+.++++.||+++++++||++|..+|
T Consensus 176 ~~~~~~~~~g~~L~~R~DD~~e~i~~RL~~Y~~~t~pv~~~Y~~~g~l~~Ida~~~~~eV~~~i~~~l 243 (244)
T PLN02674 176 KVPGVDDVTGEPLIQRKDDTAAVLKSRLEAFHKQTEPVIDYYAKKGVVANLHAEKPPKEVTAEVQKAL 243 (244)
T ss_pred cccCcccccCCccccCCCCCHHHHHHHHHHHHHHhHHHHHHHHhcCCEEEEECCCCHHHHHHHHHHHh
Confidence 111 124578999999999999999999999999999999999999999999999999999999876
No 3
>PRK14526 adenylate kinase; Provisional
Probab=100.00 E-value=2.5e-34 Score=250.56 Aligned_cols=190 Identities=37% Similarity=0.620 Sum_probs=164.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhCCCeeehHHHH--------------HHHHHcCCccCHHHHHHHHHHHHHcccccCC
Q 022951 75 VQWVFLGCPGVGKGTYASRLSNLLGVPHIATGDLL--------------DEIVSQGKLVSDEIIINLLSKRLEAGEAKGE 140 (289)
Q Consensus 75 ~~Ivl~GppGsGKSTlak~La~~lg~~~i~~d~l~--------------~~~l~~g~~v~~~~~~~ll~~~l~~~~~~~~ 140 (289)
|.|+|+|+|||||||+++.|++.+++.|+++++++ ..++..|..+|++++..++.+.+..... .
T Consensus 1 m~i~l~G~pGsGKsT~a~~La~~~~~~~is~G~llr~~~~~~t~~g~~i~~~~~~g~lvpd~~~~~lv~~~l~~~~~--~ 78 (211)
T PRK14526 1 MKLVFLGPPGSGKGTIAKILSNELNYYHISTGDLFRENILNSTPLGKEIKQIVENGQLVPDSITIKIVEDKINTIKN--N 78 (211)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCceeecChHHHHhcccCChhhHHHHHHHHcCccCChHHHHHHHHHHHhcccc--c
Confidence 46899999999999999999999999999999998 3567789999999999999999976543 4
Q ss_pred ceEEEcCcccH----HHHhhcCCCcEEEEEecCHHHHHHHHhcccccccCCCccccccccccCCCCCCCCCCCCC--CCC
Q 022951 141 AGFILDGFPRT----EILEGVTDIDLVINLKLREEALLAKCLGRRICSECGGNYNVACIDIKGENGNPGMYMGPL--LPP 214 (289)
Q Consensus 141 ~g~Ildg~p~~----~~l~~~~~~d~vI~Ld~~~e~l~~Rl~~R~~~~~~g~~y~~~~~~~~~~~~~~~~~~~~~--~~~ 214 (289)
.+|||||||++ +.|+.+.....+|+|++|++++.+|+.+|+.|+.||..||.. +.|+- .-+
T Consensus 79 ~g~ilDGfPR~~~Qa~~l~~~~~~~~vi~l~~~~~~~~~Rl~~R~~~~~~g~~y~~~-------------~~pp~~~~~~ 145 (211)
T PRK14526 79 DNFILDGFPRNINQAKALDKFLPNIKIINFLIDEELLIKRLSGRRICKSCNNIFNIY-------------TLPTKEKGIC 145 (211)
T ss_pred CcEEEECCCCCHHHHHHHHHhcCCCEEEEEECCHHHHHHHHHCCCcccccCCccccc-------------cCCCCccCcC
Confidence 69999999999 445554444578899999999999999999999999999986 22211 111
Q ss_pred CccccCccccCCCcHHHHHHHHHHHHHhchHHHHHHHHcCcEEEEeCCCCcccHHHHHHHHhccC
Q 022951 215 PHCASKLITRSDDKEEVVRERLRIYNEKSRPVEEFYRRRGKLLEFDLPGGIPESWPKLLQALNLE 279 (289)
Q Consensus 215 ~~~~~~L~~r~~d~~~~~~~rl~~y~~~~~~l~~~y~~~~~l~~id~~~~~~ev~~~i~~~l~~~ 279 (289)
..|..+|++|.||+++.+++||+.|++...|+.+||.+.++++.||+++++++|+++|.++|+..
T Consensus 146 ~~~~~~l~~R~DD~~e~i~~Rl~~y~~~t~pv~~~y~~~~~~~~id~~~~~~~V~~~i~~~l~~~ 210 (211)
T PRK14526 146 DVCKGDLYQRKDDKEESLKTRLQEYKLQTKPLIEFYSKCNRLNNIDASKDIDEVKKKLIEIISKK 210 (211)
T ss_pred CCCCCeeeccCCCCHHHHHHHHHHHHHhhhHHHHHHHhcCCEEEEECCCCHHHHHHHHHHHHccc
Confidence 25678999999999999999999999999999999999999999999999999999999999764
No 4
>PTZ00088 adenylate kinase 1; Provisional
Probab=100.00 E-value=1.2e-33 Score=248.96 Aligned_cols=198 Identities=38% Similarity=0.705 Sum_probs=166.0
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhCCCeeehHHHHH--------------HHHHcCCccCHHHHHHHHHHHHHccccc
Q 022951 73 KHVQWVFLGCPGVGKGTYASRLSNLLGVPHIATGDLLD--------------EIVSQGKLVSDEIIINLLSKRLEAGEAK 138 (289)
Q Consensus 73 ~~~~Ivl~GppGsGKSTlak~La~~lg~~~i~~d~l~~--------------~~l~~g~~v~~~~~~~ll~~~l~~~~~~ 138 (289)
.+|+|+|+|||||||||+|+.|+++||++|+++|++++ +++.+|..+|++++..++.+.+......
T Consensus 5 ~~mrIvl~G~PGsGK~T~a~~La~~~g~~~is~gdllr~~~~~~t~lg~~i~~~~~~G~lvpd~iv~~lv~~~l~~~~~~ 84 (229)
T PTZ00088 5 GPLKIVLFGAPGVGKGTFAEILSKKENLKHINMGNILREEIKAKTTIGKEIQKVVTSGNLVPDNLVIAIVKDEIAKVTDD 84 (229)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHhCCcEEECChHHHHHhhcCChHHHHHHHHHHcCCcCCHHHHHHHHHHHHHhhccc
Confidence 46889999999999999999999999999999999994 4566789999999999999998762111
Q ss_pred CCceEEEcCcccH----HHHhhcCCCcEEEEEecCHHHHHHHHhcccccccCCCccccccccccCCCCCCCCCCCCCCCC
Q 022951 139 GEAGFILDGFPRT----EILEGVTDIDLVINLKLREEALLAKCLGRRICSECGGNYNVACIDIKGENGNPGMYMGPLLPP 214 (289)
Q Consensus 139 ~~~g~Ildg~p~~----~~l~~~~~~d~vI~Ld~~~e~l~~Rl~~R~~~~~~g~~y~~~~~~~~~~~~~~~~~~~~~~~~ 214 (289)
...+|||||||++ ..++....++.+|+|+++.+.+++|+.+|++|+.||..||...+... .+-+|+..++
T Consensus 85 ~~~g~iLDGfPRt~~Qa~~l~~~~~~~~vi~l~~~~~~~~~Rl~~Rr~~~~~g~~y~~~~~~~~------~~~~pp~~~~ 158 (229)
T PTZ00088 85 CFKGFILDGFPRNLKQCKELGKITNIDLFVNIYLPRNILIKKLLGRRICNTCNRNFNIAHIRSD------PYDMPPILPP 158 (229)
T ss_pred cCceEEEecCCCCHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHcCcCCCccCCcceecccccc------cccCCCCCCC
Confidence 1469999999999 44555567999999999999999999999999999999998643311 1113444433
Q ss_pred Cc---cc--cCccccCCCcHHHHHHHHHHHHHhchHHHHHHHHcCc-EEEE---eCCCCcccHHHHHHHHh
Q 022951 215 PH---CA--SKLITRSDDKEEVVRERLRIYNEKSRPVEEFYRRRGK-LLEF---DLPGGIPESWPKLLQAL 276 (289)
Q Consensus 215 ~~---~~--~~L~~r~~d~~~~~~~rl~~y~~~~~~l~~~y~~~~~-l~~i---d~~~~~~ev~~~i~~~l 276 (289)
.. |+ ++|++|.||+++.+++|++.|+++..++.+||.+.++ ++.| |++++++++++.|.+.|
T Consensus 159 ~~c~~~~~~~~l~~R~DD~~e~i~~Rl~~Y~~~t~pl~~~y~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~ 229 (229)
T PTZ00088 159 ADCEGCKGNPKLQKRSDDTEEIVAHRLNTYESTNSPIIQFFKNENCNLVDFEITRGLRDFDDFYRIVLQRL 229 (229)
T ss_pred CcccccCCcccccCCCCCCHHHHHHHHHHHHHHhHHHHHHHHHcCCeEEEEecCCCCCCHHHHHHHHHhhC
Confidence 33 33 4899999999999999999999999999999999999 9888 79999999999988754
No 5
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=100.00 E-value=1.1e-33 Score=246.55 Aligned_cols=189 Identities=45% Similarity=0.790 Sum_probs=161.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCeeehHHHHH--------------HHHHcCCccCHHHHHHHHHHHHHcccccCCc
Q 022951 76 QWVFLGCPGVGKGTYASRLSNLLGVPHIATGDLLD--------------EIVSQGKLVSDEIIINLLSKRLEAGEAKGEA 141 (289)
Q Consensus 76 ~Ivl~GppGsGKSTlak~La~~lg~~~i~~d~l~~--------------~~l~~g~~v~~~~~~~ll~~~l~~~~~~~~~ 141 (289)
+|+|+|||||||||+|+.|+++||+.|++++++++ .++..|..++++++..++...+...... +.
T Consensus 1 rI~i~G~pGsGKsT~a~~La~~~g~~~is~gdllr~~~~~~~~~~~~~~~~~~~g~~vp~~~~~~l~~~~i~~~~~~-~~ 79 (210)
T TIGR01351 1 RLVLLGPPGSGKGTQAKRIAEKYGLPHISTGDLLRAEIKAGTPLGKKAKEYMEKGELVPDEIVNQLVKERLTQNQDN-EN 79 (210)
T ss_pred CEEEECCCCCCHHHHHHHHHHHcCCCeeehhHHHHHhhccccHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCccc-CC
Confidence 38899999999999999999999999999999984 3456789999999999999999774332 46
Q ss_pred eEEEcCcccH----HHHhhcC--CCcEEEEEecCHHHHHHHHhcccccccCCCccccccccccCCCCCCCCCCCCCCCCC
Q 022951 142 GFILDGFPRT----EILEGVT--DIDLVINLKLREEALLAKCLGRRICSECGGNYNVACIDIKGENGNPGMYMGPLLPPP 215 (289)
Q Consensus 142 g~Ildg~p~~----~~l~~~~--~~d~vI~Ld~~~e~l~~Rl~~R~~~~~~g~~y~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (289)
+|||||||++ +.++... .++.+|+|++|.+.+.+|+.+|+.|+.||..||....++.. ...+.
T Consensus 80 ~~ilDGfPrt~~Qa~~l~~~~~~~~~~vi~L~~~~~~~~~Rl~~R~~~~~~g~~y~~~~~~p~~-----------~~~~~ 148 (210)
T TIGR01351 80 GFILDGFPRTLSQAEALDALLKEKIDAVIELDVPDEELVERLSGRRICPSCGRVYHLKFNPPKV-----------PGCDD 148 (210)
T ss_pred cEEEeCCCCCHHHHHHHHHHhccCCCEEEEEECCHHHHHHHHHCCCccCCcCCccccccCCCcc-----------CCcCc
Confidence 9999999998 3344333 58999999999999999999999999999999986221110 01122
Q ss_pred ccccCccccCCCcHHHHHHHHHHHHHhchHHHHHHHHcCcEEEEeCCCCcccHHHHHHHHh
Q 022951 216 HCASKLITRSDDKEEVVRERLRIYNEKSRPVEEFYRRRGKLLEFDLPGGIPESWPKLLQAL 276 (289)
Q Consensus 216 ~~~~~L~~r~~d~~~~~~~rl~~y~~~~~~l~~~y~~~~~l~~id~~~~~~ev~~~i~~~l 276 (289)
.+.++|++|.||+++.+++|++.|+++..++.+||.+.++++.||++++++++|+.|.+.|
T Consensus 149 ~~~~~l~~R~dD~~e~i~~Rl~~y~~~~~~v~~~y~~~~~~~~id~~~~~~~v~~~i~~~l 209 (210)
T TIGR01351 149 CTGELLIQREDDTEEVVKKRLEVYKEQTEPLIDYYKKRGILVQIDGNGPIDEVWKRILEAL 209 (210)
T ss_pred ccCCccccCCCCCHHHHHHHHHHHHHhhHHHHHHHHhCCCEEEEECCCCHHHHHHHHHHhh
Confidence 4668999999999999999999999999999999999999999999999999999999876
No 6
>PRK14529 adenylate kinase; Provisional
Probab=100.00 E-value=3.3e-33 Score=244.69 Aligned_cols=187 Identities=30% Similarity=0.518 Sum_probs=159.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhCCCeeehHHHH--------------HHHHHcCCccCHHHHHHHHHHHHHcccccCC
Q 022951 75 VQWVFLGCPGVGKGTYASRLSNLLGVPHIATGDLL--------------DEIVSQGKLVSDEIIINLLSKRLEAGEAKGE 140 (289)
Q Consensus 75 ~~Ivl~GppGsGKSTlak~La~~lg~~~i~~d~l~--------------~~~l~~g~~v~~~~~~~ll~~~l~~~~~~~~ 140 (289)
|+|+|+|||||||||+|+.|+++|++.|+++++++ ++++.+|..+|++++..++.+++.... .
T Consensus 1 m~I~l~G~PGsGK~T~a~~La~~~~~~~is~gdllr~~i~~~t~lg~~i~~~i~~G~lvpdei~~~lv~~~l~~~~---~ 77 (223)
T PRK14529 1 MNILIFGPNGSGKGTQGALVKKKYDLAHIESGAIFREHIGGGTELGKKAKEYIDRGDLVPDDITIPMILETLKQDG---K 77 (223)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHCCCCcccchhhhhhccCCChHHHHHHHHHhccCcchHHHHHHHHHHHHhccC---C
Confidence 46899999999999999999999999999988887 467788999999999999999998765 4
Q ss_pred ceEEEcCcccH----HHHhhc-----CCCcEEEEEecCHHHHHHHHhcccccccCCCccccccccccCCCCCCCCCCCCC
Q 022951 141 AGFILDGFPRT----EILEGV-----TDIDLVINLKLREEALLAKCLGRRICSECGGNYNVACIDIKGENGNPGMYMGPL 211 (289)
Q Consensus 141 ~g~Ildg~p~~----~~l~~~-----~~~d~vI~Ld~~~e~l~~Rl~~R~~~~~~g~~y~~~~~~~~~~~~~~~~~~~~~ 211 (289)
.||||||||++ +.|+.+ ..++.+|+|++|.+++.+|+.+|+.|+.||..|+... +.|+.
T Consensus 78 ~g~iLDGfPRt~~Qa~~l~~~l~~~~~~~~~vi~l~~~~~~l~~Rl~~R~~c~~~~~~~~~~~------------~~~p~ 145 (223)
T PRK14529 78 NGWLLDGFPRNKVQAEKLWEALQKEGMKLDYVIEILLPREVAKNRIMGRRLCKNDNNHPNNIF------------IDAIK 145 (223)
T ss_pred CcEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHhhCCccccccCCcccccc------------cCCCc
Confidence 69999999999 333322 3589999999999999999999999999998777642 22221
Q ss_pred C---CCCccccCccccCCCc-HHHHHHHHHHHHHh---chHHHHHHHH-----cCcEEEEeCCCCcccHHHHHHHHh
Q 022951 212 L---PPPHCASKLITRSDDK-EEVVRERLRIYNEK---SRPVEEFYRR-----RGKLLEFDLPGGIPESWPKLLQAL 276 (289)
Q Consensus 212 ~---~~~~~~~~L~~r~~d~-~~~~~~rl~~y~~~---~~~l~~~y~~-----~~~l~~id~~~~~~ev~~~i~~~l 276 (289)
. .+..|+++|++|.||+ ++.+++||+.|+++ ..++++||.+ .++++.||+++++++|+++|.++|
T Consensus 146 ~~~~~cd~~~~~l~~R~DD~~ee~i~~Rl~~y~~~~~~~~~~~~~y~~~~~~~~~~~~~id~~~~~~~V~~~i~~~l 222 (223)
T PRK14529 146 PDGDVCRVCGGELSTRADDQDEEAINKRHDIYYDTETGTLAAAYFFKDLAAKGSTKYIELDGEGSIDEIKETLLKQL 222 (223)
T ss_pred ccCCcCcCcCCccccCCCCCcHHHHHHHHHHHHHcccccchHHHHHhhcccccCCeEEEEECCCCHHHHHHHHHHHh
Confidence 1 2345788999999997 78999999999997 4588899986 688999999999999999999876
No 7
>PRK00279 adk adenylate kinase; Reviewed
Probab=100.00 E-value=1.3e-32 Score=240.63 Aligned_cols=185 Identities=43% Similarity=0.852 Sum_probs=161.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhCCCeeehHHHHH--------------HHHHcCCccCHHHHHHHHHHHHHcccccCC
Q 022951 75 VQWVFLGCPGVGKGTYASRLSNLLGVPHIATGDLLD--------------EIVSQGKLVSDEIIINLLSKRLEAGEAKGE 140 (289)
Q Consensus 75 ~~Ivl~GppGsGKSTlak~La~~lg~~~i~~d~l~~--------------~~l~~g~~v~~~~~~~ll~~~l~~~~~~~~ 140 (289)
|+|+|+|+|||||||+|+.||++||+.|++++++++ .++..|..++++++..++.+.+..... .
T Consensus 1 ~~I~v~G~pGsGKsT~a~~la~~~~~~~is~~dl~r~~~~~~~~~~~~~~~~~~~g~~~p~~~~~~~i~~~l~~~~~--~ 78 (215)
T PRK00279 1 MRLILLGPPGAGKGTQAKFIAEKYGIPHISTGDMLRAAVKAGTELGKEAKSYMDAGELVPDEIVIGLVKERLAQPDC--K 78 (215)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCcEEECCccHHHHHhccchHHHHHHHHHHcCCcCCHHHHHHHHHHHHhccCc--c
Confidence 579999999999999999999999999999988884 345678899999999999998877554 2
Q ss_pred ceEEEcCcccH----HHHhh----c-CCCcEEEEEecCHHHHHHHHhcccccccCCCccccccccccCCCCCCCCCCCCC
Q 022951 141 AGFILDGFPRT----EILEG----V-TDIDLVINLKLREEALLAKCLGRRICSECGGNYNVACIDIKGENGNPGMYMGPL 211 (289)
Q Consensus 141 ~g~Ildg~p~~----~~l~~----~-~~~d~vI~Ld~~~e~l~~Rl~~R~~~~~~g~~y~~~~~~~~~~~~~~~~~~~~~ 211 (289)
.+|||||||++ +.++. . ..++.+|+|++|.+.+++|+.+|..|+.||..||.. +
T Consensus 79 ~g~VlDGfPr~~~qa~~l~~~l~~~~~~~~~vi~l~~~~~~~~~Rl~~R~~~~~~g~~~~~~-----------------~ 141 (215)
T PRK00279 79 NGFLLDGFPRTIPQAEALDEMLKELGIKLDAVIEIDVPDEELVERLSGRRICPACGRTYHVK-----------------F 141 (215)
T ss_pred CCEEEecCCCCHHHHHHHHHHHHHcCCCCCEEEEEECCHHHHHHHHhCCcccCccCCccccc-----------------C
Confidence 49999999998 22322 1 257899999999999999999999999999999996 3
Q ss_pred CCCC------ccccCccccCCCcHHHHHHHHHHHHHhchHHHHHHHHcCcEEEEeCCCCcccHHHHHHHHhcc
Q 022951 212 LPPP------HCASKLITRSDDKEEVVRERLRIYNEKSRPVEEFYRRRGKLLEFDLPGGIPESWPKLLQALNL 278 (289)
Q Consensus 212 ~~~~------~~~~~L~~r~~d~~~~~~~rl~~y~~~~~~l~~~y~~~~~l~~id~~~~~~ev~~~i~~~l~~ 278 (289)
+||+ .|+.+|..|.||+++.+++|++.|++++.++.+||.+.+.++.||++++++++|++|+..|..
T Consensus 142 ~~p~~~~~~~~~~~~l~~r~dd~~~~i~~Rl~~y~~~~~~i~~~y~~~~~~~~id~~~~~~~v~~~i~~~l~~ 214 (215)
T PRK00279 142 NPPKVEGKCDVCGEELIQRADDNEETVRKRLEVYHKQTAPLIDYYKKKGKLKKIDGTGSIDEVFADILKALGK 214 (215)
T ss_pred CCCCCcCcCcCCCCcccCCCCCCHHHHHHHHHHHHHhhHHHHHHHHhCCCEEEEECCCCHHHHHHHHHHHHhc
Confidence 3332 456789999999999999999999999999999999999999999999999999999998864
No 8
>PRK14530 adenylate kinase; Provisional
Probab=100.00 E-value=8.3e-32 Score=235.57 Aligned_cols=188 Identities=40% Similarity=0.736 Sum_probs=158.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhCCCeeehHHHHHH------------------HHHcCCccCHHHHHHHHHHHHHccc
Q 022951 75 VQWVFLGCPGVGKGTYASRLSNLLGVPHIATGDLLDE------------------IVSQGKLVSDEIIINLLSKRLEAGE 136 (289)
Q Consensus 75 ~~Ivl~GppGsGKSTlak~La~~lg~~~i~~d~l~~~------------------~l~~g~~v~~~~~~~ll~~~l~~~~ 136 (289)
++|+|+|+|||||||+|+.|+++||+.|++++++++. ++..|..++++....++...+..
T Consensus 4 ~~I~i~G~pGsGKsT~~~~La~~~~~~~i~~g~~lr~~~~~~~~~~~~~~~~~~~~~~~g~~~~d~~~~~~l~~~l~~-- 81 (215)
T PRK14530 4 PRILLLGAPGAGKGTQSSNLAEEFGVEHVTTGDALRANKQMDISDMDTEYDTPGEYMDAGELVPDAVVNEIVEEALSD-- 81 (215)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCeEEeccHHHHHhccCCcccccchHHHHHHHHHcCCCCCHHHHHHHHHHHHhc--
Confidence 4689999999999999999999999999999888832 34567778888888888877654
Q ss_pred ccCCceEEEcCcccH----HHHhhcCCCcEEEEEecCHHHHHHHHhcccccccCCCccccccccccCCCCCCCCCCCCCC
Q 022951 137 AKGEAGFILDGFPRT----EILEGVTDIDLVINLKLREEALLAKCLGRRICSECGGNYNVACIDIKGENGNPGMYMGPLL 212 (289)
Q Consensus 137 ~~~~~g~Ildg~p~~----~~l~~~~~~d~vI~Ld~~~e~l~~Rl~~R~~~~~~g~~y~~~~~~~~~~~~~~~~~~~~~~ 212 (289)
..+||+||||++ +.++.+..++.+|+|++|.+.+++|+.+|+.++.||..||....++.. ..
T Consensus 82 ---~~~~IldG~pr~~~q~~~l~~~~~~d~vI~Ld~~~~~l~~Rl~~R~~~~~~g~~~~~~~~~p~~-----------~~ 147 (215)
T PRK14530 82 ---ADGFVLDGYPRNLEQAEYLESITDLDVVLYLDVSEEELVDRLTGRRVCPDCGANYHVEFNQPEE-----------EG 147 (215)
T ss_pred ---CCCEEEcCCCCCHHHHHHHHHhcCCCEEEEEeCCHHHHHHHHhCCCcCcccCCccccCCCCCcc-----------cc
Confidence 248999999997 344445568999999999999999999999999999999985211100 00
Q ss_pred CCCccccCccccCCCcHHHHHHHHHHHHHhchHHHHHHHHcCcEEEEeCCCCcccHHHHHHHHhcc
Q 022951 213 PPPHCASKLITRSDDKEEVVRERLRIYNEKSRPVEEFYRRRGKLLEFDLPGGIPESWPKLLQALNL 278 (289)
Q Consensus 213 ~~~~~~~~L~~r~~d~~~~~~~rl~~y~~~~~~l~~~y~~~~~l~~id~~~~~~ev~~~i~~~l~~ 278 (289)
-...|+.+|+.|.+|+++.+++|+..|+++..++.+||.+.+.++.||++++++++|++|...|..
T Consensus 148 ~~~~~~~rl~~R~dD~~e~i~~Rl~~y~~~~~~v~~~y~~~~~~~~id~~~~~~~v~~~i~~~l~~ 213 (215)
T PRK14530 148 VCDECGGELIQRDDDTEETVRERLDVFEENTEPVIEHYRDQGVLVEVDGEQTPDEVWADIQDAIDD 213 (215)
T ss_pred cCcccCCcccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEECCCCHHHHHHHHHHHHhc
Confidence 112567799999999999999999999999999999999988999999999999999999999865
No 9
>KOG3079 consensus Uridylate kinase/adenylate kinase [Nucleotide transport and metabolism]
Probab=99.97 E-value=1e-29 Score=211.82 Aligned_cols=167 Identities=35% Similarity=0.656 Sum_probs=148.7
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHHHhCCCeeehHHHH---------------HHHHHcCCccCHHHHHHHHHHHHHccc
Q 022951 72 GKHVQWVFLGCPGVGKGTYASRLSNLLGVPHIATGDLL---------------DEIVSQGKLVSDEIIINLLSKRLEAGE 136 (289)
Q Consensus 72 ~~~~~Ivl~GppGsGKSTlak~La~~lg~~~i~~d~l~---------------~~~l~~g~~v~~~~~~~ll~~~l~~~~ 136 (289)
..+.+|+|.|+|||||.|+|.+++++||+.|+++++|+ ++++.+|..+|.++...++++.+....
T Consensus 6 ~~~~IifVlGGPGsgKgTqC~kiv~ky~ftHlSaGdLLR~E~~~~gse~g~~I~~~i~~G~iVP~ei~~~LL~~am~~~~ 85 (195)
T KOG3079|consen 6 DKPPIIFVLGGPGSGKGTQCEKIVEKYGFTHLSAGDLLRAEIASAGSERGALIKEIIKNGDLVPVEITLSLLEEAMRSSG 85 (195)
T ss_pred cCCCEEEEEcCCCCCcchHHHHHHHHcCceeecHHHHHHHHHccccChHHHHHHHHHHcCCcCcHHHHHHHHHHHHHhcC
Confidence 45789999999999999999999999999999999999 567889999999999999999998765
Q ss_pred ccCCceEEEcCcccH-H---HHhhc-C-CCcEEEEEecCHHHHHHHHhcccccccCCCccccccccccCCCCCCCCCCCC
Q 022951 137 AKGEAGFILDGFPRT-E---ILEGV-T-DIDLVINLKLREEALLAKCLGRRICSECGGNYNVACIDIKGENGNPGMYMGP 210 (289)
Q Consensus 137 ~~~~~g~Ildg~p~~-~---~l~~~-~-~~d~vI~Ld~~~e~l~~Rl~~R~~~~~~g~~y~~~~~~~~~~~~~~~~~~~~ 210 (289)
.. .+|+|||||+. + .|++. . .+++++|+||+.+.+++|+..|....
T Consensus 86 ~~--~~fLIDGyPR~~~q~~~fe~~i~~~~~fvl~fdc~ee~~l~Rll~R~q~~-------------------------- 137 (195)
T KOG3079|consen 86 DS--NGFLIDGYPRNVDQLVEFERKIQGDPDFVLFFDCPEETMLKRLLHRGQSN-------------------------- 137 (195)
T ss_pred CC--CeEEecCCCCChHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHhhcccC--------------------------
Confidence 42 35999999999 3 34433 3 48999999999999999999997431
Q ss_pred CCCCCccccCccccCCCcHHHHHHHHHHHHHhchHHHHHHHHcCcEEEEeCCCCcccHHHHHHHHhcc
Q 022951 211 LLPPPHCASKLITRSDDKEEVVRERLRIYNEKSRPVEEFYRRRGKLLEFDLPGGIPESWPKLLQALNL 278 (289)
Q Consensus 211 ~~~~~~~~~~L~~r~~d~~~~~~~rl~~y~~~~~~l~~~y~~~~~l~~id~~~~~~ev~~~i~~~l~~ 278 (289)
.|.||+.+.+++|+..|+....|+++||++.++++.||++.++++++.++...+..
T Consensus 138 ------------~R~DDn~esikkR~et~~~~t~Pvi~~~e~kg~l~~i~a~~~~d~Vf~~v~~~id~ 193 (195)
T KOG3079|consen 138 ------------SRSDDNEESIKKRLETYNKSTLPVIEYYEKKGKLLKINAERSVDDVFEEVVTAIDA 193 (195)
T ss_pred ------------CCCCCchHHHHHHHHHHHHcchHHHHHHHccCcEEEecCCCCHHHHHHHHHHHhhc
Confidence 27899999999999999999999999999999999999999999999999998864
No 10
>KOG3078 consensus Adenylate kinase [Nucleotide transport and metabolism]
Probab=99.97 E-value=9.7e-30 Score=221.34 Aligned_cols=201 Identities=47% Similarity=0.766 Sum_probs=172.7
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhCCCeeehHHHH--------------HHHHHcCCccCHHHHHHHHHHHHHccccc
Q 022951 73 KHVQWVFLGCPGVGKGTYASRLSNLLGVPHIATGDLL--------------DEIVSQGKLVSDEIIINLLSKRLEAGEAK 138 (289)
Q Consensus 73 ~~~~Ivl~GppGsGKSTlak~La~~lg~~~i~~d~l~--------------~~~l~~g~~v~~~~~~~ll~~~l~~~~~~ 138 (289)
+...++|.|+||+||+|+|.+|++.|++.|+++++++ ++++..|+.+++++...++...+....+
T Consensus 14 ~~~~~v~~G~pg~gkgt~a~~l~~~~~~~hl~tGdllr~~ia~~telg~~~~~~~~~g~lvpDeiv~~~l~~~l~~~~~- 92 (235)
T KOG3078|consen 14 KGVRAVLLGAPGSGKGTQAPRLTKNFGVIHISTGDLLRDEIASGTELGKEAKEAIDKGKLVPDEVVVRLLEKRLENPRC- 92 (235)
T ss_pred cceEEEEEeCCCCCCCccCHHHHHhcCCccchhHHHHHHHHhccCcHHHHHHHHHHhcCcCcHHHHHHHHHhhcccccc-
Confidence 5788999999999999999999999999999999999 4677889999999999977777777633
Q ss_pred CCceEEEcCcccH-----HHHhhcCCCcEEEEEecCHHHHHHHHhcccccccCCCccccccccccCCCCCCCCCCCCCCC
Q 022951 139 GEAGFILDGFPRT-----EILEGVTDIDLVINLKLREEALLAKCLGRRICSECGGNYNVACIDIKGENGNPGMYMGPLLP 213 (289)
Q Consensus 139 ~~~g~Ildg~p~~-----~~l~~~~~~d~vI~Ld~~~e~l~~Rl~~R~~~~~~g~~y~~~~~~~~~~~~~~~~~~~~~~~ 213 (289)
..+|++||||++ +.++....+|.||.|++|.+.+.+|+.+|++|+.+|+.||...++++.. +..+
T Consensus 93 -~~~~ildg~Prt~~qa~~l~~~~~~~d~Vi~l~vp~~~L~~ri~~r~ihp~sG~~Yh~~~~pPk~~-~~dD-------- 162 (235)
T KOG3078|consen 93 -QKGFILDGFPRTVQQAEELLDRIAQIDLVINLKVPEEVLVDRITGRRIHPASGRVYHLEFNPPKVP-GKDD-------- 162 (235)
T ss_pred -ccccccCCCCcchHHHHHHHHccCCcceEEEecCCHHHHHHHHhcccccCcccceecccccCCccc-cccc--------
Confidence 579999999999 3345556799999999999999999999999999999999873322221 1111
Q ss_pred CCccccCccccCCCcHHHHHHHHHHHHHhchHHHHHHHHcCcEEEEeCCCCcccHHHHHHHHhccCCcchhhhh
Q 022951 214 PPHCASKLITRSDDKEEVVRERLRIYNEKSRPVEEFYRRRGKLLEFDLPGGIPESWPKLLQALNLEDPEDKQSA 287 (289)
Q Consensus 214 ~~~~~~~L~~r~~d~~~~~~~rl~~y~~~~~~l~~~y~~~~~l~~id~~~~~~ev~~~i~~~l~~~~~~~~~~~ 287 (289)
..++.|++|.+|+++.++.|++.|++...++.+||.+.+++..+++.. .++||..+...|.....+..+..
T Consensus 163 --itgepL~qr~dD~~e~v~~rL~~y~~~~~pv~eyY~k~~~l~~~~~~~-~~~v~~~v~~~l~~~~~~~~~~~ 233 (235)
T KOG3078|consen 163 --ITGEPLIQREDDKPEVVKKRLKAYKEQTKPVLEYYKKKGVLIEFSGEK-PEEVFPNVYAFLSKKVPEREQKE 233 (235)
T ss_pred --cccChhhcCccccHHHHHHHHHHHhhcchHHHHHHHhcCeeeeccCcc-hhHhHHHHHHHHHhhhhhhhhhc
Confidence 224569999999999999999999999999999999999999999998 99999999999998887666554
No 11
>PRK13808 adenylate kinase; Provisional
Probab=99.96 E-value=5.4e-29 Score=228.79 Aligned_cols=173 Identities=37% Similarity=0.615 Sum_probs=147.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhCCCeeehHHHHH--------------HHHHcCCccCHHHHHHHHHHHHHcccccCC
Q 022951 75 VQWVFLGCPGVGKGTYASRLSNLLGVPHIATGDLLD--------------EIVSQGKLVSDEIIINLLSKRLEAGEAKGE 140 (289)
Q Consensus 75 ~~Ivl~GppGsGKSTlak~La~~lg~~~i~~d~l~~--------------~~l~~g~~v~~~~~~~ll~~~l~~~~~~~~ 140 (289)
|+|+|+|||||||||+|+.|++.||+.|++++++++ .++..|..+|++++..++.+.+....+ .
T Consensus 1 mrIiv~GpPGSGK~T~a~~LA~~ygl~~is~gdlLR~~i~~~s~~g~~~~~~~~~G~lVPdeiv~~li~e~l~~~~~--~ 78 (333)
T PRK13808 1 MRLILLGPPGAGKGTQAQRLVQQYGIVQLSTGDMLRAAVAAGTPVGLKAKDIMASGGLVPDEVVVGIISDRIEQPDA--A 78 (333)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCceecccHHHHHHhhcCChhhHHHHHHHHcCCCCCHHHHHHHHHHHHhcccc--c
Confidence 579999999999999999999999999999999994 367889999999999999999987654 4
Q ss_pred ceEEEcCcccH----HHHhhc-----CCCcEEEEEecCHHHHHHHHhcccccccCCCccccccccccCCCCCCCCCCCCC
Q 022951 141 AGFILDGFPRT----EILEGV-----TDIDLVINLKLREEALLAKCLGRRICSECGGNYNVACIDIKGENGNPGMYMGPL 211 (289)
Q Consensus 141 ~g~Ildg~p~~----~~l~~~-----~~~d~vI~Ld~~~e~l~~Rl~~R~~~~~~g~~y~~~~~~~~~~~~~~~~~~~~~ 211 (289)
.||||||||++ +.|+.+ ..||++|+||+|++++++|+..|..+...
T Consensus 79 ~G~ILDGFPRt~~QA~~L~~ll~~~gi~PDlVI~LDVp~evll~Rl~~R~~~~~~------------------------- 133 (333)
T PRK13808 79 NGFILDGFPRTVPQAEALDALLKDKQLKLDAVVELRVNEGALLARVETRVAEMRA------------------------- 133 (333)
T ss_pred CCEEEeCCCCCHHHHHHHHHHHHhcCCCcCeEEEEECCHHHHHHHHHcCcccccc-------------------------
Confidence 69999999999 333322 25999999999999999999998643100
Q ss_pred CCCCccccCccccCCCcHHHHHHHHHHHHHhchHHHHHHHHcCcEEEEeCCCCcccHHHHHHHHhccCCc
Q 022951 212 LPPPHCASKLITRSDDKEEVVRERLRIYNEKSRPVEEFYRRRGKLLEFDLPGGIPESWPKLLQALNLEDP 281 (289)
Q Consensus 212 ~~~~~~~~~L~~r~~d~~~~~~~rl~~y~~~~~~l~~~y~~~~~l~~id~~~~~~ev~~~i~~~l~~~~~ 281 (289)
++ ...|.||+.+.+++|+..|++...++++||.+.+.++.||+++++++|+.+|+.+|.....
T Consensus 134 -----rg--~~~R~DD~~E~i~kRL~~Y~~~t~PLl~~Y~e~~~lv~IDa~~siEEV~eeI~~~L~~~~~ 196 (333)
T PRK13808 134 -----RG--EEVRADDTPEVLAKRLASYRAQTEPLVHYYSEKRKLLTVDGMMTIDEVTREIGRVLAAVGA 196 (333)
T ss_pred -----cC--CccCCCCCHHHHHHHHHHHHHHhHHHHHHhhccCcEEEEECCCCHHHHHHHHHHHHHHHhC
Confidence 00 1247788999999999999999999999999888999999999999999999999976544
No 12
>PRK14528 adenylate kinase; Provisional
Probab=99.96 E-value=1.8e-28 Score=210.04 Aligned_cols=162 Identities=37% Similarity=0.680 Sum_probs=141.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhCCCeeehHHHHH--------------HHHHcCCccCHHHHHHHHHHHHHcccccCC
Q 022951 75 VQWVFLGCPGVGKGTYASRLSNLLGVPHIATGDLLD--------------EIVSQGKLVSDEIIINLLSKRLEAGEAKGE 140 (289)
Q Consensus 75 ~~Ivl~GppGsGKSTlak~La~~lg~~~i~~d~l~~--------------~~l~~g~~v~~~~~~~ll~~~l~~~~~~~~ 140 (289)
++|+|.|||||||||+|+.|+++||++|++++++++ .++..|..++++....++.+.+....+ .
T Consensus 2 ~~i~i~G~pGsGKtt~a~~la~~~~~~~is~~~~lr~~~~~~~~~g~~~~~~~~~g~lvp~~~~~~~~~~~l~~~~~--~ 79 (186)
T PRK14528 2 KNIIFMGPPGAGKGTQAKILCERLSIPQISTGDILREAVKNQTAMGIEAKRYMDAGDLVPDSVVIGIIKDRIREADC--K 79 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCeeeCCHHHHHHhhcCCHHHHHHHHHHhCCCccCHHHHHHHHHHHHhCcCc--c
Confidence 568999999999999999999999999999999983 345678889999999999888877544 3
Q ss_pred ceEEEcCcccH----HHHhhc-----CCCcEEEEEecCHHHHHHHHhcccccccCCCccccccccccCCCCCCCCCCCCC
Q 022951 141 AGFILDGFPRT----EILEGV-----TDIDLVINLKLREEALLAKCLGRRICSECGGNYNVACIDIKGENGNPGMYMGPL 211 (289)
Q Consensus 141 ~g~Ildg~p~~----~~l~~~-----~~~d~vI~Ld~~~e~l~~Rl~~R~~~~~~g~~y~~~~~~~~~~~~~~~~~~~~~ 211 (289)
.+||+||||++ +.++.+ ..+|.+|+|++|++.+++|+.+|+.+
T Consensus 80 ~g~viDG~Pr~~~qa~~l~~~~~~~~~~~d~vI~Ld~~~~~~~~Rl~~R~~~---------------------------- 131 (186)
T PRK14528 80 NGFLLDGFPRTVEQADALDALLKNEGKSIDKAINLEVPDGELLKRLLGRAEI---------------------------- 131 (186)
T ss_pred CcEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHhcCccc----------------------------
Confidence 68999999998 223322 35899999999999999999999643
Q ss_pred CCCCccccCccccCCCcHHHHHHHHHHHHHhchHHHHHHHHcCcEEEEeCCCCcccHHHHHHHHh
Q 022951 212 LPPPHCASKLITRSDDKEEVVRERLRIYNEKSRPVEEFYRRRGKLLEFDLPGGIPESWPKLLQAL 276 (289)
Q Consensus 212 ~~~~~~~~~L~~r~~d~~~~~~~rl~~y~~~~~~l~~~y~~~~~l~~id~~~~~~ev~~~i~~~l 276 (289)
..|.||+++.+++|++.|++...|+.+||.+.++++.||+++++++++.+|.+.|
T Consensus 132 ----------~gr~dd~~e~i~~Rl~~y~~~~~pv~~~y~~~~~~~~i~~~~~~~~v~~~~~~~~ 186 (186)
T PRK14528 132 ----------EGRADDNEATIKNRLDNYNKKTLPLLDFYAAQKKLSQVNGVGSLEEVTSLIQKEL 186 (186)
T ss_pred ----------cCCCCCCHHHHHHHHHHHHHHhHHHHHHHHhCCCEEEEECCCCHHHHHHHHHHhC
Confidence 1467899999999999999999999999999999999999999999999998754
No 13
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=99.96 E-value=2.2e-28 Score=209.48 Aligned_cols=172 Identities=47% Similarity=0.820 Sum_probs=150.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCeeehHHHHHH--------------HHHcCCccCHHHHHHHHHHHHHcccccCCc
Q 022951 76 QWVFLGCPGVGKGTYASRLSNLLGVPHIATGDLLDE--------------IVSQGKLVSDEIIINLLSKRLEAGEAKGEA 141 (289)
Q Consensus 76 ~Ivl~GppGsGKSTlak~La~~lg~~~i~~d~l~~~--------------~l~~g~~v~~~~~~~ll~~~l~~~~~~~~~ 141 (289)
+|+|+|+|||||||+|+.|+++||+.|+++++++++ ++.+|..++++++..++...+..... ..
T Consensus 1 ~I~i~G~pGsGKst~a~~La~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~l~~~~~--~~ 78 (194)
T cd01428 1 RILLLGPPGSGKGTQAERLAKKYGLPHISTGDLLREEIASGTELGKKAKEYIDSGKLVPDEIVIKLLKERLKKPDC--KK 78 (194)
T ss_pred CEEEECCCCCCHHHHHHHHHHHcCCeEEECcHHHHHHHhcCChHHHHHHHHHHcCCccCHHHHHHHHHHHHhcccc--cC
Confidence 389999999999999999999999999999998843 34457888999999999888876532 46
Q ss_pred eEEEcCcccH----HHHhhcC----CCcEEEEEecCHHHHHHHHhcccccccCCCccccccccccCCCCCCCCCCCCCCC
Q 022951 142 GFILDGFPRT----EILEGVT----DIDLVINLKLREEALLAKCLGRRICSECGGNYNVACIDIKGENGNPGMYMGPLLP 213 (289)
Q Consensus 142 g~Ildg~p~~----~~l~~~~----~~d~vI~Ld~~~e~l~~Rl~~R~~~~~~g~~y~~~~~~~~~~~~~~~~~~~~~~~ 213 (289)
+||+||||++ +.+.... .++++|+|++|.+.+.+|+.+|..++.||..||. .+
T Consensus 79 ~~vldg~Pr~~~q~~~l~~~~~~~~~~~~~i~l~~~~~~~~~Rl~~R~~~~~~~~~~~~-------------------~~ 139 (194)
T cd01428 79 GFILDGFPRTVDQAEALDELLDEGIKPDKVIELDVPDEVLIERILGRRICPVSGRVYHL-------------------GK 139 (194)
T ss_pred CEEEeCCCCCHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHcCCcCCCcCCcCCc-------------------CC
Confidence 8999999998 2333322 6899999999999999999999999999999997 24
Q ss_pred CCccccCccccCCCcHHHHHHHHHHHHHhchHHHHHHHHcCcEEEEeCCCCcccH
Q 022951 214 PPHCASKLITRSDDKEEVVRERLRIYNEKSRPVEEFYRRRGKLLEFDLPGGIPES 268 (289)
Q Consensus 214 ~~~~~~~L~~r~~d~~~~~~~rl~~y~~~~~~l~~~y~~~~~l~~id~~~~~~ev 268 (289)
++.|..+|..|.+|+++.+++|++.|++...++.+||.+.+.++.||++++++++
T Consensus 140 ~~~~~~~l~~r~dd~~~~i~~R~~~y~~~~~~i~~~~~~~~~~~~id~~~~~~~v 194 (194)
T cd01428 140 DDVTGEPLSQRSDDNEETIKKRLEVYKEQTAPLIDYYKKKGKLVEIDGSGDIDEV 194 (194)
T ss_pred CcccCCccccCCCCCHHHHHHHHHHHHHhHHHHHHHHHhCCCEEEEECCCCcCcC
Confidence 5677889999999999999999999999999999999999999999999998874
No 14
>PRK14531 adenylate kinase; Provisional
Probab=99.96 E-value=5.9e-28 Score=206.17 Aligned_cols=157 Identities=41% Similarity=0.743 Sum_probs=136.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhCCCeeehHHHHH--------------HHHHcCCccCHHHHHHHHHHHHHcccccCC
Q 022951 75 VQWVFLGCPGVGKGTYASRLSNLLGVPHIATGDLLD--------------EIVSQGKLVSDEIIINLLSKRLEAGEAKGE 140 (289)
Q Consensus 75 ~~Ivl~GppGsGKSTlak~La~~lg~~~i~~d~l~~--------------~~l~~g~~v~~~~~~~ll~~~l~~~~~~~~ 140 (289)
++|+|+|||||||||+|+.|+++||+.|++++++++ .++..|..++++++..++...+.... +
T Consensus 3 ~~i~i~G~pGsGKsT~~~~la~~~g~~~is~gd~lr~~~~~~~~~~~~~~~~~~~G~~v~d~l~~~~~~~~l~~~~---~ 79 (183)
T PRK14531 3 QRLLFLGPPGAGKGTQAARLCAAHGLRHLSTGDLLRSEVAAGSALGQEAEAVMNRGELVSDALVLAIVESQLKALN---S 79 (183)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCeEecccHHHHHHhcCCHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhhcc---C
Confidence 579999999999999999999999999999988883 34567889999999999888886543 4
Q ss_pred ceEEEcCcccH----HHHhhc-----CCCcEEEEEecCHHHHHHHHhcccccccCCCccccccccccCCCCCCCCCCCCC
Q 022951 141 AGFILDGFPRT----EILEGV-----TDIDLVINLKLREEALLAKCLGRRICSECGGNYNVACIDIKGENGNPGMYMGPL 211 (289)
Q Consensus 141 ~g~Ildg~p~~----~~l~~~-----~~~d~vI~Ld~~~e~l~~Rl~~R~~~~~~g~~y~~~~~~~~~~~~~~~~~~~~~ 211 (289)
.+|||||||++ +.++.+ ..++.+|+|++|++.+.+|+.+|.
T Consensus 80 ~g~ilDGfpr~~~q~~~~~~~~~~~~~~~~~vi~l~~~~~~l~~Rl~~R~------------------------------ 129 (183)
T PRK14531 80 GGWLLDGFPRTVAQAEALEPLLEELKQPIEAVVLLELDDAVLIERLLARG------------------------------ 129 (183)
T ss_pred CcEEEeCCCCCHHHHHHHHHHHHHcCCCCCeEEEEECCHHHHHHHhhcCC------------------------------
Confidence 58999999999 223222 247889999999999999999884
Q ss_pred CCCCccccCccccCCCcHHHHHHHHHHHHHhchHHHHHHHHcCcEEEEeCCCCcccHHHHHHHHh
Q 022951 212 LPPPHCASKLITRSDDKEEVVRERLRIYNEKSRPVEEFYRRRGKLLEFDLPGGIPESWPKLLQAL 276 (289)
Q Consensus 212 ~~~~~~~~~L~~r~~d~~~~~~~rl~~y~~~~~~l~~~y~~~~~l~~id~~~~~~ev~~~i~~~l 276 (289)
|.||+++.+++|++.|++...++++||.+.+.++.||+++++++++.+|.+.|
T Consensus 130 ------------r~dD~~e~i~~Rl~~y~~~~~pv~~~y~~~~~~~~id~~~~~~~v~~~i~~~l 182 (183)
T PRK14531 130 ------------RADDNEAVIRNRLEVYREKTAPLIDHYRQRGLLQSVEAQGSIEAITERIEKVL 182 (183)
T ss_pred ------------CCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEECCCCHHHHHHHHHHHh
Confidence 45788999999999999999999999999999999999999999999999876
No 15
>PRK14532 adenylate kinase; Provisional
Probab=99.96 E-value=1e-27 Score=205.07 Aligned_cols=163 Identities=42% Similarity=0.657 Sum_probs=140.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhCCCeeehHHHHHH--------------HHHcCCccCHHHHHHHHHHHHHcccccCC
Q 022951 75 VQWVFLGCPGVGKGTYASRLSNLLGVPHIATGDLLDE--------------IVSQGKLVSDEIIINLLSKRLEAGEAKGE 140 (289)
Q Consensus 75 ~~Ivl~GppGsGKSTlak~La~~lg~~~i~~d~l~~~--------------~l~~g~~v~~~~~~~ll~~~l~~~~~~~~ 140 (289)
|.|+|+|+|||||||+|+.||+++|+.|+++++++++ ++..|+.++++++..++...+..... +
T Consensus 1 ~~i~~~G~pGsGKsT~a~~la~~~g~~~is~~d~lr~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~--~ 78 (188)
T PRK14532 1 MNLILFGPPAAGKGTQAKRLVEERGMVQLSTGDMLRAAIASGSELGQRVKGIMDRGELVSDEIVIALIEERLPEAEA--A 78 (188)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHcCCeEEeCcHHHHHHHHcCCHHHHHHHHHHHCCCccCHHHHHHHHHHHHhCcCc--c
Confidence 4689999999999999999999999999999998843 35678899999999999988876543 5
Q ss_pred ceEEEcCcccH----HHHhhc-----CCCcEEEEEecCHHHHHHHHhcccccccCCCccccccccccCCCCCCCCCCCCC
Q 022951 141 AGFILDGFPRT----EILEGV-----TDIDLVINLKLREEALLAKCLGRRICSECGGNYNVACIDIKGENGNPGMYMGPL 211 (289)
Q Consensus 141 ~g~Ildg~p~~----~~l~~~-----~~~d~vI~Ld~~~e~l~~Rl~~R~~~~~~g~~y~~~~~~~~~~~~~~~~~~~~~ 211 (289)
.|||+||||++ +.++.+ ..||.+|+|++|++.+.+|+.+|..+
T Consensus 79 ~g~vldg~pr~~~q~~~~~~~l~~~g~~pd~vi~L~v~~~~~~~Rl~~R~~~---------------------------- 130 (188)
T PRK14532 79 GGAIFDGFPRTVAQAEALDKMLASRGQKIDVVIRLKVDDEALIERIVKRFEE---------------------------- 130 (188)
T ss_pred CcEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHcCcCc----------------------------
Confidence 79999999998 222221 35899999999999999999988532
Q ss_pred CCCCccccCccccCCCcHHHHHHHHHHHHHhchHHHHHHHHcCcEEEEeCCCCcccHHHHHHHHhc
Q 022951 212 LPPPHCASKLITRSDDKEEVVRERLRIYNEKSRPVEEFYRRRGKLLEFDLPGGIPESWPKLLQALN 277 (289)
Q Consensus 212 ~~~~~~~~~L~~r~~d~~~~~~~rl~~y~~~~~~l~~~y~~~~~l~~id~~~~~~ev~~~i~~~l~ 277 (289)
..|++++.+.+.+|+..|+++..++.++|.+.+.++.||+++++++++++|.+.|.
T Consensus 131 ----------~~r~dd~~~~~~~Rl~~~~~~~~~i~~~y~~~~~~~~id~~~~~eev~~~I~~~l~ 186 (188)
T PRK14532 131 ----------QGRPDDNPEVFVTRLDAYNAQTAPLLPYYAGQGKLTEVDGMGSIEAVAASIDAALE 186 (188)
T ss_pred ----------CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEECCCCHHHHHHHHHHHHh
Confidence 14678889999999999999999999999988899999999999999999999874
No 16
>PLN02842 nucleotide kinase
Probab=99.96 E-value=3.4e-28 Score=233.40 Aligned_cols=186 Identities=34% Similarity=0.603 Sum_probs=158.9
Q ss_pred EEEcCCCCCHHHHHHHHHHHhCCCeeehHHHH--------------HHHHHcCCccCHHHHHHHHHHHHHcccccCCceE
Q 022951 78 VFLGCPGVGKGTYASRLSNLLGVPHIATGDLL--------------DEIVSQGKLVSDEIIINLLSKRLEAGEAKGEAGF 143 (289)
Q Consensus 78 vl~GppGsGKSTlak~La~~lg~~~i~~d~l~--------------~~~l~~g~~v~~~~~~~ll~~~l~~~~~~~~~g~ 143 (289)
.|+|+|||||||+|+.|+++|++.|+++++++ ++++.+|+.++++.+..++.+++....+. ..+|
T Consensus 1 ~I~G~PGSGKSTqa~~Lak~lg~~hIs~gdLLR~ev~~~T~iG~~Ire~l~~G~lvPdeiv~~ll~drl~~~~~~-~~G~ 79 (505)
T PLN02842 1 MISGAPASGKGTQCELIVHKFGLVHISTGDLLRAEVSAGTDIGKRAKEFMNSGRLVPDEIVIAMVTGRLSREDAK-EKGW 79 (505)
T ss_pred CeeCCCCCCHHHHHHHHHHHhCCCEEEccHHHHHHhccCCHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhCcccc-CCcE
Confidence 37999999999999999999999999998887 45678899999999999999888765433 4689
Q ss_pred EEcCcccH-H---HHhhc-CCCcEEEEEecCHHHHHHHHhcccccccCCCccccccccccCCCCCCCCCCCCCCCCCccc
Q 022951 144 ILDGFPRT-E---ILEGV-TDIDLVINLKLREEALLAKCLGRRICSECGGNYNVACIDIKGENGNPGMYMGPLLPPPHCA 218 (289)
Q Consensus 144 Ildg~p~~-~---~l~~~-~~~d~vI~Ld~~~e~l~~Rl~~R~~~~~~g~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (289)
||||||++ . .++.. ..||++|+||++++.+++|+.+|..|+.||..||... .|+. .+.+.
T Consensus 80 ILDGfPRt~~Qa~~Le~~~~~PDlVI~LDvpdevlleRl~gR~~dp~tG~iYh~~~-------------~pP~--~~~~~ 144 (505)
T PLN02842 80 LLDGYPRSFAQAQSLEKLKIRPDIFILLDVPDEILIDRCVGRRLDPVTGKIYHIKN-------------FPPE--SEEIK 144 (505)
T ss_pred EEeCCCCcHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHhccccccccCCcccccc-------------CCCC--ccccc
Confidence 99999999 3 33333 2589999999999999999999999999999999962 2221 12345
Q ss_pred cCccccCCCcHHHHHHHHHHHHHhchHHHHHHHHcCcEEEEeCCCCcccHHHHHHHHhccCCc
Q 022951 219 SKLITRSDDKEEVVRERLRIYNEKSRPVEEFYRRRGKLLEFDLPGGIPESWPKLLQALNLEDP 281 (289)
Q Consensus 219 ~~L~~r~~d~~~~~~~rl~~y~~~~~~l~~~y~~~~~l~~id~~~~~~ev~~~i~~~l~~~~~ 281 (289)
.+|.+|.||+++.+++||+.|+++..++.++|.+ .++.||+++++++|+++|.+.|.....
T Consensus 145 ~rL~~R~DD~eE~IkkRL~~Y~~~t~pIl~~Y~~--rl~~IDAsqs~EeVfeeI~~iL~~~L~ 205 (505)
T PLN02842 145 ARLITRPDDTEEKVKARLQIYKKNAEAILSTYSD--IMVKIDGNRPKEVVFEEISSLLSQIQK 205 (505)
T ss_pred cccccCCCCCHHHHHHHHHHHHHHhhhHHHhcCc--EEEEEECCCCHHHHHHHHHHHHHHHHh
Confidence 7899999999999999999999999999999963 589999999999999999999975543
No 17
>PRK14527 adenylate kinase; Provisional
Probab=99.96 E-value=1.4e-27 Score=205.04 Aligned_cols=165 Identities=39% Similarity=0.665 Sum_probs=141.9
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHHHhCCCeeehHHHHH--------------HHHHcCCccCHHHHHHHHHHHHHcccc
Q 022951 72 GKHVQWVFLGCPGVGKGTYASRLSNLLGVPHIATGDLLD--------------EIVSQGKLVSDEIIINLLSKRLEAGEA 137 (289)
Q Consensus 72 ~~~~~Ivl~GppGsGKSTlak~La~~lg~~~i~~d~l~~--------------~~l~~g~~v~~~~~~~ll~~~l~~~~~ 137 (289)
.++++|+|+|||||||||+|+.|+++||+.|++.++++. .++..|..++++.+..++.+.+.....
T Consensus 4 ~~~~~i~i~G~pGsGKsT~a~~La~~~~~~~is~gd~~r~~~~~~~~~~~~~~~~~~~g~~~p~~~~~~l~~~~l~~~~~ 83 (191)
T PRK14527 4 TKNKVVIFLGPPGAGKGTQAERLAQELGLKKLSTGDILRDHVARGTELGQRAKPIMEAGDLVPDELILALIRDELAGMEP 83 (191)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHhCCCCCCccHHHHHHHhcCcHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCC
Confidence 356889999999999999999999999999999999983 345668889999999999988876543
Q ss_pred cCCceEEEcCcccH----HHHhhc-----CCCcEEEEEecCHHHHHHHHhcccccccCCCccccccccccCCCCCCCCCC
Q 022951 138 KGEAGFILDGFPRT----EILEGV-----TDIDLVINLKLREEALLAKCLGRRICSECGGNYNVACIDIKGENGNPGMYM 208 (289)
Q Consensus 138 ~~~~g~Ildg~p~~----~~l~~~-----~~~d~vI~Ld~~~e~l~~Rl~~R~~~~~~g~~y~~~~~~~~~~~~~~~~~~ 208 (289)
.+||+||||++ +.++.+ ..++.+|+|++|.+.+.+|+.+|...
T Consensus 84 ---~~~VlDGfpr~~~q~~~~~~~~~~~g~~~~~vi~l~~~~~~~~~Rl~~R~~~------------------------- 135 (191)
T PRK14527 84 ---VRVIFDGFPRTLAQAEALDRLLEELGARLLAVVLLEVPDEELIRRIVERARQ------------------------- 135 (191)
T ss_pred ---CcEEEcCCCCCHHHHHHHHHHHHHcCCCCCEEEEEECCHHHHHHHHHcCccc-------------------------
Confidence 47999999987 223221 24788999999999999999999632
Q ss_pred CCCCCCCccccCccccCCCcHHHHHHHHHHHHHhchHHHHHHHHcCcEEEEeCCCCcccHHHHHHHHhc
Q 022951 209 GPLLPPPHCASKLITRSDDKEEVVRERLRIYNEKSRPVEEFYRRRGKLLEFDLPGGIPESWPKLLQALN 277 (289)
Q Consensus 209 ~~~~~~~~~~~~L~~r~~d~~~~~~~rl~~y~~~~~~l~~~y~~~~~l~~id~~~~~~ev~~~i~~~l~ 277 (289)
.+|.||+++.+++|++.|++...++.+||.+.+.++.||+++++++++++|+..|.
T Consensus 136 -------------~~r~dd~~~~~~~R~~~y~~~~~~v~~~y~~~~~~~~id~~~~~~~v~~~i~~~l~ 191 (191)
T PRK14527 136 -------------EGRSDDNEETVRRRQQVYREQTQPLVDYYEARGHLKRVDGLGTPDEVYARILKALG 191 (191)
T ss_pred -------------CCCCCCCHHHHHHHHHHHHHHhHHHHHHHHhcCCEEEEECCCCHHHHHHHHHHhhC
Confidence 25778899999999999999999999999999999999999999999999998763
No 18
>PLN02200 adenylate kinase family protein
Probab=99.95 E-value=9.3e-27 Score=206.18 Aligned_cols=168 Identities=30% Similarity=0.620 Sum_probs=143.7
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHHHHhCCCeeehHHHHHH--------------HHHcCCccCHHHHHHHHHHHHHccc
Q 022951 71 EGKHVQWVFLGCPGVGKGTYASRLSNLLGVPHIATGDLLDE--------------IVSQGKLVSDEIIINLLSKRLEAGE 136 (289)
Q Consensus 71 ~~~~~~Ivl~GppGsGKSTlak~La~~lg~~~i~~d~l~~~--------------~l~~g~~v~~~~~~~ll~~~l~~~~ 136 (289)
...+++|+|+|+|||||||+|+.|+++||+.|+++++++++ ++..|..++++....++.+.+....
T Consensus 40 ~~~~~ii~I~G~PGSGKsT~a~~La~~~g~~his~gdllR~~i~~~s~~~~~i~~~~~~G~~vp~e~~~~~l~~~l~~~~ 119 (234)
T PLN02200 40 EKTPFITFVLGGPGSGKGTQCEKIVETFGFKHLSAGDLLRREIASNSEHGAMILNTIKEGKIVPSEVTVKLIQKEMESSD 119 (234)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHhCCeEEEccHHHHHHHhccChhHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCC
Confidence 34568899999999999999999999999999999999843 3456888999999998888886543
Q ss_pred ccCCceEEEcCcccH-H---HHhhc--CCCcEEEEEecCHHHHHHHHhcccccccCCCccccccccccCCCCCCCCCCCC
Q 022951 137 AKGEAGFILDGFPRT-E---ILEGV--TDIDLVINLKLREEALLAKCLGRRICSECGGNYNVACIDIKGENGNPGMYMGP 210 (289)
Q Consensus 137 ~~~~~g~Ildg~p~~-~---~l~~~--~~~d~vI~Ld~~~e~l~~Rl~~R~~~~~~g~~y~~~~~~~~~~~~~~~~~~~~ 210 (289)
+.+|||||||++ + .++.+ ..+|.+|+|+++++++.+|+.+|+.
T Consensus 120 ---~~~~ILDG~Prt~~q~~~l~~~~~~~pd~vi~Ld~~~e~~~~Rl~~R~~---------------------------- 168 (234)
T PLN02200 120 ---NNKFLIDGFPRTEENRIAFERIIGAEPNVVLFFDCPEEEMVKRVLNRNQ---------------------------- 168 (234)
T ss_pred ---CCeEEecCCcccHHHHHHHHHHhccCCCEEEEEECCHHHHHHHHHcCcC----------------------------
Confidence 358999999998 2 23333 2589999999999999999998852
Q ss_pred CCCCCccccCccccCCCcHHHHHHHHHHHHHhchHHHHHHHHcCcEEEEeCCCCcccHHHHHHHHhccCCc
Q 022951 211 LLPPPHCASKLITRSDDKEEVVRERLRIYNEKSRPVEEFYRRRGKLLEFDLPGGIPESWPKLLQALNLEDP 281 (289)
Q Consensus 211 ~~~~~~~~~~L~~r~~d~~~~~~~rl~~y~~~~~~l~~~y~~~~~l~~id~~~~~~ev~~~i~~~l~~~~~ 281 (289)
.|.+|+.+.+++|++.|++...++.+||++.+.++.||++++++++++.|++.|.....
T Consensus 169 ------------~r~dd~~e~~~~Rl~~y~~~~~pv~~~y~~~~~~~~IDa~~~~eeV~~~v~~~l~~~~~ 227 (234)
T PLN02200 169 ------------GRVDDNIDTIKKRLKVFNALNLPVIDYYSKKGKLYTINAVGTVDEIFEQVRPIFAACEA 227 (234)
T ss_pred ------------CCCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEECCCCHHHHHHHHHHHHHHcCC
Confidence 24577889999999999999999999999888999999999999999999999876543
No 19
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=99.95 E-value=1.1e-26 Score=197.68 Aligned_cols=160 Identities=33% Similarity=0.621 Sum_probs=136.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCeeehHHHHH--------------HHHHcCCccCHHHHHHHHHHHHHcccccCCc
Q 022951 76 QWVFLGCPGVGKGTYASRLSNLLGVPHIATGDLLD--------------EIVSQGKLVSDEIIINLLSKRLEAGEAKGEA 141 (289)
Q Consensus 76 ~Ivl~GppGsGKSTlak~La~~lg~~~i~~d~l~~--------------~~l~~g~~v~~~~~~~ll~~~l~~~~~~~~~ 141 (289)
+|+|+|+|||||||+|+.|++++|+.|++++++++ .++.+|..++++....++...+.... +.
T Consensus 1 ~i~i~G~pGsGKst~a~~la~~~~~~~is~~d~lr~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~---~~ 77 (183)
T TIGR01359 1 VVFVLGGPGSGKGTQCAKIVENFGFTHLSAGDLLRAEIKSGSENGELIESMIKNGKIVPSEVTVKLLKNAIQADG---SK 77 (183)
T ss_pred CEEEECCCCCCHHHHHHHHHHHcCCeEEECChHHHHHHhcCChHHHHHHHHHHCCCcCCHHHHHHHHHHHHhccC---CC
Confidence 47899999999999999999999999999988883 34567888999999999988887543 46
Q ss_pred eEEEcCcccH----HHHhh----cCCCcEEEEEecCHHHHHHHHhcccccccCCCccccccccccCCCCCCCCCCCCCCC
Q 022951 142 GFILDGFPRT----EILEG----VTDIDLVINLKLREEALLAKCLGRRICSECGGNYNVACIDIKGENGNPGMYMGPLLP 213 (289)
Q Consensus 142 g~Ildg~p~~----~~l~~----~~~~d~vI~Ld~~~e~l~~Rl~~R~~~~~~g~~y~~~~~~~~~~~~~~~~~~~~~~~ 213 (289)
+|||||||++ +.|.. ...++.+|||++|.+.+++|+..|...
T Consensus 78 ~~vlDg~p~~~~q~~~~~~~~~~~~~~d~~i~l~~~~~~~~~Rl~~R~~~------------------------------ 127 (183)
T TIGR01359 78 KFLIDGFPRNEENLEAWEKLMDNKVNFKFVLFFDCPEEVMIKRLLKRGQS------------------------------ 127 (183)
T ss_pred cEEEeCCCCCHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHhcCCcc------------------------------
Confidence 9999999998 22322 236899999999999999999998532
Q ss_pred CCccccCccccCCCcHHHHHHHHHHHHHhchHHHHHHHHcCcEEEEeCCCCcccHHHHHHHHh
Q 022951 214 PPHCASKLITRSDDKEEVVRERLRIYNEKSRPVEEFYRRRGKLLEFDLPGGIPESWPKLLQAL 276 (289)
Q Consensus 214 ~~~~~~~L~~r~~d~~~~~~~rl~~y~~~~~~l~~~y~~~~~l~~id~~~~~~ev~~~i~~~l 276 (289)
..|.+++.+.+++|++.|.+...++.++|.+.+.++.||+++++++++++|.++|
T Consensus 128 --------~~r~dd~~e~~~~r~~~y~~~~~~i~~~~~~~~~~~~Id~~~~~~~v~~~i~~~l 182 (183)
T TIGR01359 128 --------SGRVDDNIESIKKRFRTYNEQTLPVIEHYENKGKVKEINAEGSVEEVFEDVEKIF 182 (183)
T ss_pred --------CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEECCCCHHHHHHHHHHHh
Confidence 1345778899999999999999999999998888999999999999999999876
No 20
>PRK02496 adk adenylate kinase; Provisional
Probab=99.95 E-value=3.2e-26 Score=195.31 Aligned_cols=160 Identities=39% Similarity=0.734 Sum_probs=138.4
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHHHhCCCeeehHHHHHH--------------HHHcCCccCHHHHHHHHHHHHHcccccC
Q 022951 74 HVQWVFLGCPGVGKGTYASRLSNLLGVPHIATGDLLDE--------------IVSQGKLVSDEIIINLLSKRLEAGEAKG 139 (289)
Q Consensus 74 ~~~Ivl~GppGsGKSTlak~La~~lg~~~i~~d~l~~~--------------~l~~g~~v~~~~~~~ll~~~l~~~~~~~ 139 (289)
+++|+|.|+|||||||+|+.|++.||++|+++++++++ ++..|..++++.+..++.+.+....+
T Consensus 1 ~~~i~i~G~pGsGKst~a~~la~~~~~~~i~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~~l~~~l~~~~~-- 78 (184)
T PRK02496 1 MTRLIFLGPPGAGKGTQAVVLAEHLHIPHISTGDILRQAIKEQTPLGIKAQGYMDKGELVPDQLVLDLVQERLQQPDA-- 78 (184)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCcEEEhHHHHHHHHhccChhHHHHHHHHHCCCccCHHHHHHHHHHHHhCcCc--
Confidence 36799999999999999999999999999999998843 45678889999999999998876544
Q ss_pred CceEEEcCcccH----HHHhh----c-CCCcEEEEEecCHHHHHHHHhcccccccCCCccccccccccCCCCCCCCCCCC
Q 022951 140 EAGFILDGFPRT----EILEG----V-TDIDLVINLKLREEALLAKCLGRRICSECGGNYNVACIDIKGENGNPGMYMGP 210 (289)
Q Consensus 140 ~~g~Ildg~p~~----~~l~~----~-~~~d~vI~Ld~~~e~l~~Rl~~R~~~~~~g~~y~~~~~~~~~~~~~~~~~~~~ 210 (289)
..+||+||||++ ..++. + ..++.+|+|++|.+.+.+|+..|.
T Consensus 79 ~~g~vldGfPr~~~q~~~l~~~~~~~~~~~~~vi~l~~~~~~~~~Rl~~R~----------------------------- 129 (184)
T PRK02496 79 ANGWILDGFPRKVTQAAFLDELLQEIGQSGERVVNLDVPDDVVVERLLARG----------------------------- 129 (184)
T ss_pred cCCEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHhcCC-----------------------------
Confidence 358999999997 22322 2 258999999999999999999883
Q ss_pred CCCCCccccCccccCCCcHHHHHHHHHHHHHhchHHHHHHHHcCcEEEEeCCCCcccHHHHHHHHhc
Q 022951 211 LLPPPHCASKLITRSDDKEEVVRERLRIYNEKSRPVEEFYRRRGKLLEFDLPGGIPESWPKLLQALN 277 (289)
Q Consensus 211 ~~~~~~~~~~L~~r~~d~~~~~~~rl~~y~~~~~~l~~~y~~~~~l~~id~~~~~~ev~~~i~~~l~ 277 (289)
+.+|.++.+++|++.|+++..++.+||.+.+.++.||+++++++++++|.+.|.
T Consensus 130 -------------~~dd~~~~~~~r~~~y~~~~~~v~~~~~~~~~~~~Ida~~~~~~V~~~i~~~l~ 183 (184)
T PRK02496 130 -------------RKDDTEEVIRRRLEVYREQTAPLIDYYRDRQKLLTIDGNQSVEAVTTELKAALA 183 (184)
T ss_pred -------------CCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEECCCCHHHHHHHHHHHhC
Confidence 236778999999999999999999999888899999999999999999998874
No 21
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=99.93 E-value=4.1e-25 Score=187.70 Aligned_cols=154 Identities=45% Similarity=0.847 Sum_probs=138.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhCCCeeehHHHH--------------HHHHHcCCccCHHHHHHHHHHHHHcccccCC
Q 022951 75 VQWVFLGCPGVGKGTYASRLSNLLGVPHIATGDLL--------------DEIVSQGKLVSDEIIINLLSKRLEAGEAKGE 140 (289)
Q Consensus 75 ~~Ivl~GppGsGKSTlak~La~~lg~~~i~~d~l~--------------~~~l~~g~~v~~~~~~~ll~~~l~~~~~~~~ 140 (289)
|+|+|.|||||||||+|+.|+++++++|+|+++++ +.++..|+.+++++...++..++...++. .
T Consensus 1 ~riiilG~pGaGK~T~A~~La~~~~i~hlstgd~~r~~~~~~t~lg~~~k~~i~~g~lv~d~i~~~~v~~rl~~~d~~-~ 79 (178)
T COG0563 1 MRILILGPPGAGKSTLAKKLAKKLGLPHLDTGDILRAAIAERTELGEEIKKYIDKGELVPDEIVNGLVKERLDEADCK-A 79 (178)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCCcEEcHhHHhHhhhccCChHHHHHHHHHHcCCccchHHHHHHHHHHHHhhccc-C
Confidence 57999999999999999999999999999999998 56788999999999999999999987655 3
Q ss_pred ceEEEcCcccH----HHHhhc-----CCCcEEEEEecCHHHHHHHHhcccccccCCCccccccccccCCCCCCCCCCCCC
Q 022951 141 AGFILDGFPRT----EILEGV-----TDIDLVINLKLREEALLAKCLGRRICSECGGNYNVACIDIKGENGNPGMYMGPL 211 (289)
Q Consensus 141 ~g~Ildg~p~~----~~l~~~-----~~~d~vI~Ld~~~e~l~~Rl~~R~~~~~~g~~y~~~~~~~~~~~~~~~~~~~~~ 211 (289)
+||+||||++ +.++++ ...|.+++++++.+.++.|+..|..
T Consensus 80 -~~I~dg~PR~~~qa~~l~r~l~~~g~~~d~v~~~~~~~~~~~~r~~~r~~----------------------------- 129 (178)
T COG0563 80 -GFILDGFPRTLCQARALKRLLKELGVRLDMVIELDVPEELLLERLLGRRV----------------------------- 129 (178)
T ss_pred -eEEEeCCCCcHHHHHHHHHHHHHcCCCcceEEeeeCCHHHHHHHHhCccc-----------------------------
Confidence 8999999999 334432 3689999999999999999999852
Q ss_pred CCCCccccCccccCCCcHHHHHHHHHHHHHhchHHHHHHHHcCcEEEEeCCCCcccHHHHHHHHh
Q 022951 212 LPPPHCASKLITRSDDKEEVVRERLRIYNEKSRPVEEFYRRRGKLLEFDLPGGIPESWPKLLQAL 276 (289)
Q Consensus 212 ~~~~~~~~~L~~r~~d~~~~~~~rl~~y~~~~~~l~~~y~~~~~l~~id~~~~~~ev~~~i~~~l 276 (289)
|.||+++.+++|+..|++...|+..||. +.||+.++++++++.+.+.+
T Consensus 130 ------------r~dd~~~~~~~R~~~y~~~~~pli~~y~-----~~id~~~~i~~v~~~i~~~l 177 (178)
T COG0563 130 ------------REDDNEETVKKRLKVYHEQTAPLIEYYS-----VTIDGSGEIEEVLADILKAL 177 (178)
T ss_pred ------------cccCCHHHHHHHHHHHHhcccchhhhhe-----eeccCCCCHHHHHHHHHHhh
Confidence 5799999999999999999999999997 78999999999999998876
No 22
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=99.93 E-value=4e-24 Score=182.04 Aligned_cols=165 Identities=30% Similarity=0.579 Sum_probs=136.9
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHHHhCCCeeehHHHHHH--------------HHHcCCccCHHHHHHHHHHHHHcccccC
Q 022951 74 HVQWVFLGCPGVGKGTYASRLSNLLGVPHIATGDLLDE--------------IVSQGKLVSDEIIINLLSKRLEAGEAKG 139 (289)
Q Consensus 74 ~~~Ivl~GppGsGKSTlak~La~~lg~~~i~~d~l~~~--------------~l~~g~~v~~~~~~~ll~~~l~~~~~~~ 139 (289)
..+|+|+|+|||||||+|+.|++.+|+.+++.+++++. ++.+|..++++.+...+...+......
T Consensus 3 ~~ii~i~G~~GsGKsTl~~~l~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~- 81 (188)
T TIGR01360 3 CKIIFIVGGPGSGKGTQCEKIVEKYGFTHLSTGDLLRAEVASGSERGKQLQAIMESGDLVPLDTVLDLLKDAMVAALGT- 81 (188)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCCcEEeHHHHHHHHHhcCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcccCc-
Confidence 46889999999999999999999999999999988733 345577788888777777776553333
Q ss_pred CceEEEcCcccH----HHHh-hcCCCcEEEEEecCHHHHHHHHhcccccccCCCccccccccccCCCCCCCCCCCCCCCC
Q 022951 140 EAGFILDGFPRT----EILE-GVTDIDLVINLKLREEALLAKCLGRRICSECGGNYNVACIDIKGENGNPGMYMGPLLPP 214 (289)
Q Consensus 140 ~~g~Ildg~p~~----~~l~-~~~~~d~vI~Ld~~~e~l~~Rl~~R~~~~~~g~~y~~~~~~~~~~~~~~~~~~~~~~~~ 214 (289)
+.+||+||||++ +.+. .+..++++|||++|.+.+.+|+.+|...
T Consensus 82 ~~~~i~dg~~~~~~q~~~~~~~~~~~~~vi~l~~~~~~~~~Rl~~R~~~------------------------------- 130 (188)
T TIGR01360 82 SKGFLIDGYPREVKQGEEFERRIGPPTLVLYFDCSEDTMVKRLLKRAET------------------------------- 130 (188)
T ss_pred CCeEEEeCCCCCHHHHHHHHHcCCCCCEEEEEECCHHHHHHHHHccccc-------------------------------
Confidence 579999999987 2332 3345899999999999999999988521
Q ss_pred CccccCccccCCCcHHHHHHHHHHHHHhchHHHHHHHHcCcEEEEeCCCCcccHHHHHHHHhc
Q 022951 215 PHCASKLITRSDDKEEVVRERLRIYNEKSRPVEEFYRRRGKLLEFDLPGGIPESWPKLLQALN 277 (289)
Q Consensus 215 ~~~~~~L~~r~~d~~~~~~~rl~~y~~~~~~l~~~y~~~~~l~~id~~~~~~ev~~~i~~~l~ 277 (289)
..|.+++++.+.+|+..|++...++.++|...+.++.||+++++++++.+|...|+
T Consensus 131 -------~~r~d~~~~~~~~r~~~~~~~~~~~~~~y~~~~~~~~id~~~~~~~v~~~i~~~l~ 186 (188)
T TIGR01360 131 -------SGRVDDNEKTIKKRLETYYKATEPVIAYYETKGKLRKINAEGTVDDVFLQVCTAID 186 (188)
T ss_pred -------CCCCCCCHHHHHHHHHHHHHhhHHHHHHHHhCCCEEEEECCCCHHHHHHHHHHHHh
Confidence 13567888999999999999999999999888889999999999999999999885
No 23
>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells. Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....
Probab=99.91 E-value=1.6e-23 Score=173.27 Aligned_cols=128 Identities=48% Similarity=0.809 Sum_probs=107.1
Q ss_pred EEcCCCCCHHHHHHHHHHHhCCCeeehHHHH--------------HHHHHcCCccCHHHHHHHHHHHHHcccccCCceEE
Q 022951 79 FLGCPGVGKGTYASRLSNLLGVPHIATGDLL--------------DEIVSQGKLVSDEIIINLLSKRLEAGEAKGEAGFI 144 (289)
Q Consensus 79 l~GppGsGKSTlak~La~~lg~~~i~~d~l~--------------~~~l~~g~~v~~~~~~~ll~~~l~~~~~~~~~g~I 144 (289)
|.|||||||||+|+.||++||+.||++++++ ++++.+|+.+|++++..++...+.... . ..|||
T Consensus 1 i~G~PgsGK~t~~~~la~~~~~~~is~~~llr~~~~~~s~~g~~i~~~l~~g~~vp~~~v~~ll~~~l~~~~-~-~~g~i 78 (151)
T PF00406_consen 1 ILGPPGSGKGTQAKRLAKRYGLVHISVGDLLREEIKSDSELGKQIQEYLDNGELVPDELVIELLKERLEQPP-C-NRGFI 78 (151)
T ss_dssp EEESTTSSHHHHHHHHHHHHTSEEEEHHHHHHHHHHTTSHHHHHHHHHHHTTSS--HHHHHHHHHHHHHSGG-T-TTEEE
T ss_pred CcCCCCCChHHHHHHHHHhcCcceechHHHHHHHHhhhhHHHHHHHHHHHhhccchHHHHHHHHHHHHhhhc-c-cceee
Confidence 6899999999999999999999999999999 356788999999999999999998772 2 57999
Q ss_pred EcCcccH----HHHhh-----cCCCcEEEEEecCHHHHHHHHhcccccccCCCccccccccccCCCCCCCCCCCCCCCCC
Q 022951 145 LDGFPRT----EILEG-----VTDIDLVINLKLREEALLAKCLGRRICSECGGNYNVACIDIKGENGNPGMYMGPLLPPP 215 (289)
Q Consensus 145 ldg~p~~----~~l~~-----~~~~d~vI~Ld~~~e~l~~Rl~~R~~~~~~g~~y~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (289)
|||||++ +.|+. ...++.+|+|++|.+.+.+|+.+
T Consensus 79 ldGfPrt~~Qa~~l~~~~~~~~~~~~~vi~L~~~~~~~~~R~~~------------------------------------ 122 (151)
T PF00406_consen 79 LDGFPRTLEQAEALEEILEEEGIPPDLVIFLDCPDETLIERLSQ------------------------------------ 122 (151)
T ss_dssp EESB-SSHHHHHHHHHHHHHTTSEESEEEEEE--HHHHHHHHHT------------------------------------
T ss_pred eeeccccHHHHHHHHHHHhhcccchheeeccccchhhhhhhccc------------------------------------
Confidence 9999999 33443 34689999999999999999874
Q ss_pred ccccCccccCCCcHHHHHHHHHHHHHhchHHHHHHHHcCc
Q 022951 216 HCASKLITRSDDKEEVVRERLRIYNEKSRPVEEFYRRRGK 255 (289)
Q Consensus 216 ~~~~~L~~r~~d~~~~~~~rl~~y~~~~~~l~~~y~~~~~ 255 (289)
|+.+.+++|++.|+++..++.+||.+.|+
T Consensus 123 -----------d~~~~i~~Rl~~y~~~~~~i~~~y~~~g~ 151 (151)
T PF00406_consen 123 -----------DNEEVIKKRLEEYRENTEPILDYYKEQGK 151 (151)
T ss_dssp -----------GSHHHHHHHHHHHHHHHHHHHHHHHHTT-
T ss_pred -----------CCHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 34788999999999999999999998763
No 24
>PRK03839 putative kinase; Provisional
Probab=99.73 E-value=1.5e-16 Score=135.11 Aligned_cols=152 Identities=22% Similarity=0.257 Sum_probs=101.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhCCCeeehHHHHHHHHHcCCccCHH--HHHHHHHHHHHcccccCCceEEEcCcccHH
Q 022951 75 VQWVFLGCPGVGKGTYASRLSNLLGVPHIATGDLLDEIVSQGKLVSDE--IIINLLSKRLEAGEAKGEAGFILDGFPRTE 152 (289)
Q Consensus 75 ~~Ivl~GppGsGKSTlak~La~~lg~~~i~~d~l~~~~l~~g~~v~~~--~~~~ll~~~l~~~~~~~~~g~Ildg~p~~~ 152 (289)
|+|+|+|+|||||||+++.|+++++++|+++|+++.+. .-+....++ .....++..+..... +.+||+||+...
T Consensus 1 m~I~l~G~pGsGKsT~~~~La~~~~~~~id~d~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~vIidG~~~~- 76 (180)
T PRK03839 1 MIIAITGTPGVGKTTVSKLLAEKLGYEYVDLTEFALKK-GIGEEKDDEMEIDFDKLAYFIEEEFK--EKNVVLDGHLSH- 76 (180)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCcEEehhhhhhhc-CCcccCChhhhcCHHHHHHHHHHhcc--CCCEEEEecccc-
Confidence 47999999999999999999999999999999988432 111222221 122334444433211 357999996542
Q ss_pred HHhhcCCCcEEEEEecCHHHHHHHHhcccccccCCCccccccccccCCCCCCCCCCCCCCCCCccccCccccCCCcHHHH
Q 022951 153 ILEGVTDIDLVINLKLREEALLAKCLGRRICSECGGNYNVACIDIKGENGNPGMYMGPLLPPPHCASKLITRSDDKEEVV 232 (289)
Q Consensus 153 ~l~~~~~~d~vI~Ld~~~e~l~~Rl~~R~~~~~~g~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~r~~d~~~~~ 232 (289)
+..++.+|||+++.+.+.+|+..|.... .+..+.+
T Consensus 77 ----l~~~~~vi~L~~~~~~~~~Rl~~R~~~~-----------------------------------------~~~~~~~ 111 (180)
T PRK03839 77 ----LLPVDYVIVLRAHPKIIKERLKERGYSK-----------------------------------------KKILENV 111 (180)
T ss_pred ----ccCCCEEEEEECCHHHHHHHHHHcCCCH-----------------------------------------HHHHHHH
Confidence 3458999999999999999998774210 0001111
Q ss_pred HHHHHHHHHhchHHHHHHHHcCcEEEEeCC-CCcccHHHHHHHHhccCC
Q 022951 233 RERLRIYNEKSRPVEEFYRRRGKLLEFDLP-GGIPESWPKLLQALNLED 280 (289)
Q Consensus 233 ~~rl~~y~~~~~~l~~~y~~~~~l~~id~~-~~~~ev~~~i~~~l~~~~ 280 (289)
..++. + ..+.++|...+.++.||++ .++++++.+|.+.|....
T Consensus 112 ~~~~~---~--~~~~~~~~~r~~~~~Id~~~~s~eev~~~I~~~l~~~~ 155 (180)
T PRK03839 112 EAELV---D--VCLCEALEEKEKVIEVDTTGKTPEEVVEEILELIKSGK 155 (180)
T ss_pred HHHHH---H--HHHHHHHHhcCCEEEEECCCCCHHHHHHHHHHHHhcCC
Confidence 11111 1 1233556566778999996 599999999999997653
No 25
>PRK06217 hypothetical protein; Validated
Probab=99.71 E-value=2.9e-16 Score=133.91 Aligned_cols=168 Identities=19% Similarity=0.175 Sum_probs=108.4
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHHHhCCCeeehHHHHHHHHHc----CCccCHHHHHHHHHHHHHcccccCCceEEEcCcc
Q 022951 74 HVQWVFLGCPGVGKGTYASRLSNLLGVPHIATGDLLDEIVSQ----GKLVSDEIIINLLSKRLEAGEAKGEAGFILDGFP 149 (289)
Q Consensus 74 ~~~Ivl~GppGsGKSTlak~La~~lg~~~i~~d~l~~~~l~~----g~~v~~~~~~~ll~~~l~~~~~~~~~g~Ildg~p 149 (289)
+++|+|+|+|||||||+|+.|++.+|++|++.|+++.. .. +...+.+.....+...+.. +.+||+||++
T Consensus 1 ~~~I~i~G~~GsGKSTla~~L~~~l~~~~~~~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~vi~G~~ 73 (183)
T PRK06217 1 MMRIHITGASGSGTTTLGAALAERLDIPHLDTDDYFWL--PTDPPFTTKRPPEERLRLLLEDLRP-----REGWVLSGSA 73 (183)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHcCCcEEEcCceeec--cCCCCccccCCHHHHHHHHHHHHhc-----CCCEEEEccH
Confidence 36799999999999999999999999999999998742 12 1234455555554444432 3489999977
Q ss_pred cHHHHhhcCCCcEEEEEecCHHHHHHHHhcccccccCCCccccccccccCCCCCCCCCCCCCCCCCccccCccccCCCcH
Q 022951 150 RTEILEGVTDIDLVINLKLREEALLAKCLGRRICSECGGNYNVACIDIKGENGNPGMYMGPLLPPPHCASKLITRSDDKE 229 (289)
Q Consensus 150 ~~~~l~~~~~~d~vI~Ld~~~e~l~~Rl~~R~~~~~~g~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~r~~d~~ 229 (289)
....-.....+|.+|||++|.+++++|+.+|.... .|.. .. + ....+...
T Consensus 74 ~~~~~~~~~~~d~~i~Ld~~~~~~~~Rl~~R~~~~-~~~~-~~----------------~------------~~~~e~~~ 123 (183)
T PRK06217 74 LGWGDPLEPLFDLVVFLTIPPELRLERLRLREFQR-YGNR-IL----------------P------------GGDMHKAS 123 (183)
T ss_pred HHHHHHHHhhCCEEEEEECCHHHHHHHHHcCcccc-cCcc-cC----------------C------------CCCHHHHH
Confidence 65111122347999999999999999999996431 0100 00 0 00001122
Q ss_pred HHHHHHHHHHHH------hchHHHHHHHHc-CcEEEEeCCCCcccHHHHHHHHhcc
Q 022951 230 EVVRERLRIYNE------KSRPVEEFYRRR-GKLLEFDLPGGIPESWPKLLQALNL 278 (289)
Q Consensus 230 ~~~~~rl~~y~~------~~~~l~~~y~~~-~~l~~id~~~~~~ev~~~i~~~l~~ 278 (289)
..+.++...|.. .......++... ..++.+++..+++++.++|...|+.
T Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~i~~~~~~ 179 (183)
T PRK06217 124 LEFLEWAASYDTAGPEGRSLAAHEQWLADQSCPVLRLDGDLTVEDLLDEVLDHLAS 179 (183)
T ss_pred HHHHHHHHhccCCCCCcccHHHHHHHHHhCCCCeEEEcCCCCHHHHHHHHHHHHhc
Confidence 334444444442 122223333332 5688899999999999999999864
No 26
>PRK13974 thymidylate kinase; Provisional
Probab=99.65 E-value=3.7e-15 Score=130.13 Aligned_cols=157 Identities=19% Similarity=0.130 Sum_probs=107.6
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHHHhCCC----------ee------ehHHHHHHHHHc--CCccCHHHHHHHH-------
Q 022951 74 HVQWVFLGCPGVGKGTYASRLSNLLGVP----------HI------ATGDLLDEIVSQ--GKLVSDEIIINLL------- 128 (289)
Q Consensus 74 ~~~Ivl~GppGsGKSTlak~La~~lg~~----------~i------~~d~l~~~~l~~--g~~v~~~~~~~ll------- 128 (289)
..+|+|.|++||||||+++.|++.+... +. ..+.++++++.. |...++.....++
T Consensus 3 g~~i~~eG~dGsGKsT~~~~l~~~l~~~g~~~~~~~~~~~~~p~~~~~g~~ir~~l~~~~~~~~~~~~~~~llf~adr~~ 82 (212)
T PRK13974 3 GKFIVLEGIDGCGKTTQIDHLSKWLPSSGLMPKGAKLIITREPGGTLLGKSLRELLLDTSKDNSPSPLAELLLYAADRAQ 82 (212)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHhcCccccCCeeeeeeCCCCCchHHHHHHHHcCCCcccCCCHHHHHHHHHHHHHH
Confidence 4789999999999999999999988321 11 246667777753 2333444332222
Q ss_pred --HHHHHcccccCCceEEEcC----------cccH------HHHhh----cCCCcEEEEEecCHHHHHHHHhcccccccC
Q 022951 129 --SKRLEAGEAKGEAGFILDG----------FPRT------EILEG----VTDIDLVINLKLREEALLAKCLGRRICSEC 186 (289)
Q Consensus 129 --~~~l~~~~~~~~~g~Ildg----------~p~~------~~l~~----~~~~d~vI~Ld~~~e~l~~Rl~~R~~~~~~ 186 (289)
...+...... +..+|.|. +++. ..++. ...||++||||+|++++.+|+.+|.
T Consensus 83 ~~~~~i~~~l~~-g~~Vi~DRy~~S~~ay~g~~r~~~~~~~~~l~~~~~~~~~pd~~i~ld~~~~~~~~R~~~R~----- 156 (212)
T PRK13974 83 HVSKIIRPALEN-GDWVISDRFSGSTLAYQGYGRGLDLELIKNLESIATQGLSPDLTFFLEISVEESIRRRKNRK----- 156 (212)
T ss_pred HHHHHHHHHHHC-CCEEEEcCchhhHHHHccccCCCCHHHHHHHHHHHhCCCCCCEEEEEeCCHHHHHHHHHhcc-----
Confidence 1111111111 23455554 4433 12222 1259999999999999999998763
Q ss_pred CCccccccccccCCCCCCCCCCCCCCCCCccccCccccCCCcHHHHHHHHHHHHHhchHHHHHHHHcCcEEEEeCCCCcc
Q 022951 187 GGNYNVACIDIKGENGNPGMYMGPLLPPPHCASKLITRSDDKEEVVRERLRIYNEKSRPVEEFYRRRGKLLEFDLPGGIP 266 (289)
Q Consensus 187 g~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~r~~d~~~~~~~rl~~y~~~~~~l~~~y~~~~~l~~id~~~~~~ 266 (289)
+| .++++...|.+...+...+|.+.+.++.||++++++
T Consensus 157 ---------------------------------------dD---~~e~~~~~y~~~v~~~y~~y~~~~~~~~Ida~~~~e 194 (212)
T PRK13974 157 ---------------------------------------PD---RIEAEGIEFLERVAEGFALIAEERNWKVISADQSIE 194 (212)
T ss_pred ---------------------------------------cC---chhhhhHHHHHHHHHHHHHHHhcCCEEEEeCCCCHH
Confidence 22 255667788888888888998888999999999999
Q ss_pred cHHHHHHHHhcc
Q 022951 267 ESWPKLLQALNL 278 (289)
Q Consensus 267 ev~~~i~~~l~~ 278 (289)
+++++|.++|..
T Consensus 195 eV~~~I~~~l~~ 206 (212)
T PRK13974 195 TISNEIKETLLN 206 (212)
T ss_pred HHHHHHHHHHHH
Confidence 999999999975
No 27
>PRK13949 shikimate kinase; Provisional
Probab=99.64 E-value=7.7e-15 Score=123.81 Aligned_cols=100 Identities=21% Similarity=0.309 Sum_probs=68.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhCCCeeehHHHHHHHH---------HcCCccCHHHHHHHHHHHHHcccccCCceEEE
Q 022951 75 VQWVFLGCPGVGKGTYASRLSNLLGVPHIATGDLLDEIV---------SQGKLVSDEIIINLLSKRLEAGEAKGEAGFIL 145 (289)
Q Consensus 75 ~~Ivl~GppGsGKSTlak~La~~lg~~~i~~d~l~~~~l---------~~g~~v~~~~~~~ll~~~l~~~~~~~~~g~Il 145 (289)
..|+|+|+|||||||+++.||+.+++.++++|.++++.. ..|+....+....++.. +.. ..++|+
T Consensus 2 ~~I~liG~~GsGKstl~~~La~~l~~~~id~D~~i~~~~~~~~~~~~~~~g~~~fr~~e~~~l~~-l~~-----~~~~vi 75 (169)
T PRK13949 2 ARIFLVGYMGAGKTTLGKALARELGLSFIDLDFFIENRFHKTVGDIFAERGEAVFRELERNMLHE-VAE-----FEDVVI 75 (169)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCCCeecccHHHHHHHCccHHHHHHHhCHHHHHHHHHHHHHH-HHh-----CCCEEE
Confidence 469999999999999999999999999999998884332 22222222222333333 211 124555
Q ss_pred -cC--cccH-HHHhhcCCCcEEEEEecCHHHHHHHHhcc
Q 022951 146 -DG--FPRT-EILEGVTDIDLVINLKLREEALLAKCLGR 180 (289)
Q Consensus 146 -dg--~p~~-~~l~~~~~~d~vI~Ld~~~e~l~~Rl~~R 180 (289)
+| ++.. +..+.+...+++|||++|.+.+.+|+..+
T Consensus 76 s~Ggg~~~~~~~~~~l~~~~~vi~L~~~~~~~~~Ri~~~ 114 (169)
T PRK13949 76 STGGGAPCFFDNMELMNASGTTVYLKVSPEVLFVRLRLA 114 (169)
T ss_pred EcCCcccCCHHHHHHHHhCCeEEEEECCHHHHHHHHhcC
Confidence 54 3333 34444445689999999999999999753
No 28
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=99.64 E-value=8.7e-15 Score=122.52 Aligned_cols=153 Identities=24% Similarity=0.290 Sum_probs=97.3
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHHHhCCCeeehHHHHHHHH---------HcCCccCHHHHHHHHHHHHHcccccCCceEE
Q 022951 74 HVQWVFLGCPGVGKGTYASRLSNLLGVPHIATGDLLDEIV---------SQGKLVSDEIIINLLSKRLEAGEAKGEAGFI 144 (289)
Q Consensus 74 ~~~Ivl~GppGsGKSTlak~La~~lg~~~i~~d~l~~~~l---------~~g~~v~~~~~~~ll~~~l~~~~~~~~~g~I 144 (289)
.+.|+|+|++||||||+++.||+.++++++|+|.++++.. ..|+......-.+.+.+.+... ..+|
T Consensus 2 ~~~IvLiG~mGaGKSTIGr~LAk~L~~~F~D~D~~Ie~~~g~sI~eIF~~~GE~~FR~~E~~vl~~l~~~~-----~~Vi 76 (172)
T COG0703 2 NMNIVLIGFMGAGKSTIGRALAKALNLPFIDTDQEIEKRTGMSIAEIFEEEGEEGFRRLETEVLKELLEED-----NAVI 76 (172)
T ss_pred CccEEEEcCCCCCHhHHHHHHHHHcCCCcccchHHHHHHHCcCHHHHHHHHhHHHHHHHHHHHHHHHhhcC-----CeEE
Confidence 3579999999999999999999999999999999994321 2243333333333444433322 2344
Q ss_pred EcC--cccH-HHHhhcCCCcEEEEEecCHHHHHHHHhcccccccCCCccccccccccCCCCCCCCCCCCCCCCCccccCc
Q 022951 145 LDG--FPRT-EILEGVTDIDLVINLKLREEALLAKCLGRRICSECGGNYNVACIDIKGENGNPGMYMGPLLPPPHCASKL 221 (289)
Q Consensus 145 ldg--~p~~-~~l~~~~~~d~vI~Ld~~~e~l~~Rl~~R~~~~~~g~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L 221 (289)
-.| .... +....+.....+|||++|.+.+++|+...... +|
T Consensus 77 aTGGG~v~~~enr~~l~~~g~vv~L~~~~e~l~~Rl~~~~~R------------------------------------Pl 120 (172)
T COG0703 77 ATGGGAVLSEENRNLLKKRGIVVYLDAPFETLYERLQRDRKR------------------------------------PL 120 (172)
T ss_pred ECCCccccCHHHHHHHHhCCeEEEEeCCHHHHHHHhccccCC------------------------------------Cc
Confidence 443 2222 44444444569999999999999999844322 22
Q ss_pred cccCCC---cHHHHHHHHHHHHHhchHHHHHHHHcCcEEEEeCCCCcccHHHHHHHHhccC
Q 022951 222 ITRSDD---KEEVVRERLRIYNEKSRPVEEFYRRRGKLLEFDLPGGIPESWPKLLQALNLE 279 (289)
Q Consensus 222 ~~r~~d---~~~~~~~rl~~y~~~~~~l~~~y~~~~~l~~id~~~~~~ev~~~i~~~l~~~ 279 (289)
.+..+. -.+.+++|...|++. . .+.++.+...++++.+|.+.|...
T Consensus 121 l~~~~~~~~l~~L~~~R~~~Y~e~-----------a-~~~~~~~~~~~~v~~~i~~~l~~~ 169 (172)
T COG0703 121 LQTEDPREELEELLEERQPLYREV-----------A-DFIIDTDDRSEEVVEEILEALEGS 169 (172)
T ss_pred ccCCChHHHHHHHHHHHHHHHHHh-----------C-cEEecCCCCcHHHHHHHHHHHHHh
Confidence 333332 234455555555443 2 356776666689999998887643
No 29
>PRK01184 hypothetical protein; Provisional
Probab=99.63 E-value=1.9e-14 Score=122.53 Aligned_cols=156 Identities=17% Similarity=0.223 Sum_probs=100.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhCCCeeehHHHHHHHHHc-CCccC----------------HHHHHHHHHHHHHcccc
Q 022951 75 VQWVFLGCPGVGKGTYASRLSNLLGVPHIATGDLLDEIVSQ-GKLVS----------------DEIIINLLSKRLEAGEA 137 (289)
Q Consensus 75 ~~Ivl~GppGsGKSTlak~La~~lg~~~i~~d~l~~~~l~~-g~~v~----------------~~~~~~ll~~~l~~~~~ 137 (289)
++|+|+|+|||||||+++ +++++|++++++++++++.+.. +.... ...+..++...+..
T Consensus 2 ~~i~l~G~~GsGKsT~a~-~~~~~g~~~i~~~d~lr~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~--- 77 (184)
T PRK01184 2 KIIGVVGMPGSGKGEFSK-IAREMGIPVVVMGDVIREEVKKRGLEPTDENIGKVAIDLRKELGMDAVAKRTVPKIRE--- 77 (184)
T ss_pred cEEEEECCCCCCHHHHHH-HHHHcCCcEEEhhHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHChHHHHHHHHHHHHh---
Confidence 578999999999999987 7899999999999998766532 22111 11121222223332
Q ss_pred cCCceEEEcCcccH---HHHhhcCC-CcEEEEEecCHHHHHHHHhcccccccCCCccccccccccCCCCCCCCCCCCCCC
Q 022951 138 KGEAGFILDGFPRT---EILEGVTD-IDLVINLKLREEALLAKCLGRRICSECGGNYNVACIDIKGENGNPGMYMGPLLP 213 (289)
Q Consensus 138 ~~~~g~Ildg~p~~---~~l~~~~~-~d~vI~Ld~~~e~l~~Rl~~R~~~~~~g~~y~~~~~~~~~~~~~~~~~~~~~~~ 213 (289)
.++..+|+||+... +.++.... ...+|++++|.+.+.+|+..|....
T Consensus 78 ~~~~~vvidg~r~~~e~~~~~~~~~~~~~~i~v~~~~~~~~~Rl~~R~~~~----------------------------- 128 (184)
T PRK01184 78 KGDEVVVIDGVRGDAEVEYFRKEFPEDFILIAIHAPPEVRFERLKKRGRSD----------------------------- 128 (184)
T ss_pred cCCCcEEEeCCCCHHHHHHHHHhCCcccEEEEEECCHHHHHHHHHHcCCCC-----------------------------
Confidence 12468999998433 34444433 5689999999999999999874210
Q ss_pred CCccccCccccCCCcHHHHHHHHHHHHHhchHHHHHHHHcCcEEEEeCCCCcccHHHHHHHHhcc
Q 022951 214 PPHCASKLITRSDDKEEVVRERLRIYNEKSRPVEEFYRRRGKLLEFDLPGGIPESWPKLLQALNL 278 (289)
Q Consensus 214 ~~~~~~~L~~r~~d~~~~~~~rl~~y~~~~~~l~~~y~~~~~l~~id~~~~~~ev~~~i~~~l~~ 278 (289)
...+.+.+.+|...... + ++.+.+...+ +.|++++++++++.+|.+.++.
T Consensus 129 -----------d~~~~~~~~~r~~~q~~-~-~~~~~~~~ad--~vI~N~~~~~~l~~~v~~~~~~ 178 (184)
T PRK01184 129 -----------DPKSWEELEERDERELS-W-GIGEVIALAD--YMIVNDSTLEEFRARVRKLLER 178 (184)
T ss_pred -----------ChhhHHHHHHHHHHHhc-c-CHHHHHHhcC--EEEeCCCCHHHHHHHHHHHHHH
Confidence 00135566666654321 1 1333343222 3566788999999999988764
No 30
>PRK13973 thymidylate kinase; Provisional
Probab=99.63 E-value=3.5e-14 Score=124.07 Aligned_cols=163 Identities=17% Similarity=0.184 Sum_probs=105.8
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHHHh---CCCeeeh--------HHHHHHHHHcC--CccCHHHH--------HHHHHHHH
Q 022951 74 HVQWVFLGCPGVGKGTYASRLSNLL---GVPHIAT--------GDLLDEIVSQG--KLVSDEII--------INLLSKRL 132 (289)
Q Consensus 74 ~~~Ivl~GppGsGKSTlak~La~~l---g~~~i~~--------d~l~~~~l~~g--~~v~~~~~--------~~ll~~~l 132 (289)
.++|+|.|++||||||+++.|++.+ |..++.+ ++++++++..+ ..+..... ...+...+
T Consensus 3 g~~IviEG~dGsGKtTq~~~l~~~l~~~g~~~~~~~~p~~~~~g~~ir~~l~~~~~~~~~~~~~~ll~~a~r~~~~~~~i 82 (213)
T PRK13973 3 GRFITFEGGEGAGKSTQIRLLAERLRAAGYDVLVTREPGGSPGAEAIRHVLLSGAAELYGPRMEALLFAAARDDHVEEVI 82 (213)
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEECCCCCchHHHHHHHHcCCCccCCCHHHHHHHHHHHHHHHHHHHH
Confidence 5789999999999999999999999 7777755 77777766543 22222110 11111112
Q ss_pred HcccccCCceEEEcCcccH----------------HHHhh----cCCCcEEEEEecCHHHHHHHHhcccccccCCCcccc
Q 022951 133 EAGEAKGEAGFILDGFPRT----------------EILEG----VTDIDLVINLKLREEALLAKCLGRRICSECGGNYNV 192 (289)
Q Consensus 133 ~~~~~~~~~g~Ildg~p~~----------------~~l~~----~~~~d~vI~Ld~~~e~l~~Rl~~R~~~~~~g~~y~~ 192 (289)
...... +..+|.|.|..+ +.+.. ...||++||||+|+++..+|+.+|.... +.
T Consensus 83 ~~~l~~-g~~Vi~DRy~~S~~ayq~~~~~~~~~~~~~l~~~~~~~~~PD~vi~Ldv~~e~~~~Rl~~R~~~~------~~ 155 (213)
T PRK13973 83 RPALAR-GKIVLCDRFIDSTRAYQGVTGNVDPALLAALERVAINGVMPDLTLILDIPAEVGLERAAKRRGSD------TP 155 (213)
T ss_pred HHHHHC-CCEEEEcchhhhHHHHcccccCCCHHHHHHHHHHHhCCCCCCEEEEEeCCHHHHHHHHHhccCCC------cc
Confidence 111111 346777875432 11221 1359999999999999999999885321 00
Q ss_pred ccccccCCCCCCCCCCCCCCCCCccccCccccCC-CcHHHHHHHHHHHHHhchHHHHHHHHcCcEEEEeCCCCcccHHHH
Q 022951 193 ACIDIKGENGNPGMYMGPLLPPPHCASKLITRSD-DKEEVVRERLRIYNEKSRPVEEFYRRRGKLLEFDLPGGIPESWPK 271 (289)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~r~~-d~~~~~~~rl~~y~~~~~~l~~~y~~~~~l~~id~~~~~~ev~~~ 271 (289)
.+.+ +..+.++++.+.|.+.. ++| .+.++.||+++++++++.+
T Consensus 156 ------------------------------~~~e~~~~~~~~~~~~~y~~l~----~~~--~~~~~~Ida~~~~e~V~~~ 199 (213)
T PRK13973 156 ------------------------------DRFEKEDLAFHEKRREAFLQIA----AQE--PERCVVIDATASPEAVAAE 199 (213)
T ss_pred ------------------------------CchhhchHHHHHHHHHHHHHHH----HhC--CCcEEEEcCCCCHHHHHHH
Confidence 1122 34566677777777643 222 2468999999999999999
Q ss_pred HHHHhccC
Q 022951 272 LLQALNLE 279 (289)
Q Consensus 272 i~~~l~~~ 279 (289)
|.++|...
T Consensus 200 I~~~i~~~ 207 (213)
T PRK13973 200 IWAAVDQR 207 (213)
T ss_pred HHHHHHHH
Confidence 99998754
No 31
>PRK08356 hypothetical protein; Provisional
Probab=99.60 E-value=7.5e-15 Score=126.51 Aligned_cols=101 Identities=20% Similarity=0.274 Sum_probs=68.1
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHHHhCCCeeehHHHHH-------------------------HHHHcCCccCH----HHH
Q 022951 74 HVQWVFLGCPGVGKGTYASRLSNLLGVPHIATGDLLD-------------------------EIVSQGKLVSD----EII 124 (289)
Q Consensus 74 ~~~Ivl~GppGsGKSTlak~La~~lg~~~i~~d~l~~-------------------------~~l~~g~~v~~----~~~ 124 (289)
.|+|+|+|||||||||+|+.|+ ++|+.+++.++.+. .+++.|..+++ +++
T Consensus 5 ~~~i~~~G~~gsGK~t~a~~l~-~~g~~~is~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~e~g~~~~~~yG~~~~ 83 (195)
T PRK08356 5 KMIVGVVGKIAAGKTTVAKFFE-EKGFCRVSCSDPLIDLLTHNVSDYSWVPEVPFKGEPTRENLIELGRYLKEKYGEDIL 83 (195)
T ss_pred cEEEEEECCCCCCHHHHHHHHH-HCCCcEEeCCCcccccccccccccccccHHHHhhccccccHHHHHHHHHHhcCcHHH
Confidence 4789999999999999999996 58999999887531 11222222222 333
Q ss_pred HHHHHHHHHcccccCCceEEEcCcccH-HHHhhcCC-CcEEEEEecCHHHHHHHHhccc
Q 022951 125 INLLSKRLEAGEAKGEAGFILDGFPRT-EILEGVTD-IDLVINLKLREEALLAKCLGRR 181 (289)
Q Consensus 125 ~~ll~~~l~~~~~~~~~g~Ildg~p~~-~~l~~~~~-~d~vI~Ld~~~e~l~~Rl~~R~ 181 (289)
..+..+.+.. ...|++||+ ++ ++.+.+.. ...+|||++|.+++.+|+.+|.
T Consensus 84 ~~~~~~~~~~-----~~~ividG~-r~~~q~~~l~~~~~~vi~l~~~~~~~~~Rl~~R~ 136 (195)
T PRK08356 84 IRLAVDKKRN-----CKNIAIDGV-RSRGEVEAIKRMGGKVIYVEAKPEIRFERLRRRG 136 (195)
T ss_pred HHHHHHHhcc-----CCeEEEcCc-CCHHHHHHHHhcCCEEEEEECCHHHHHHHHHhcC
Confidence 3333333311 236999999 55 33322222 3689999999999999999885
No 32
>PRK08233 hypothetical protein; Provisional
Probab=99.57 E-value=4.4e-14 Score=119.41 Aligned_cols=160 Identities=19% Similarity=0.203 Sum_probs=94.6
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHHHhCC-CeeehHHH--------HHHHHHcCCccCHHHHHHHHHHHHHcccccCCce-E
Q 022951 74 HVQWVFLGCPGVGKGTYASRLSNLLGV-PHIATGDL--------LDEIVSQGKLVSDEIIINLLSKRLEAGEAKGEAG-F 143 (289)
Q Consensus 74 ~~~Ivl~GppGsGKSTlak~La~~lg~-~~i~~d~l--------~~~~l~~g~~v~~~~~~~ll~~~l~~~~~~~~~g-~ 143 (289)
.++|+|.|+|||||||+|+.|++.++. ..+..|.. +..++..+... +......+.+.+.......... +
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~~l~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~v 81 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTHKLKNSKALYFDRYDFDNCPEDICKWIDKGANY-SEWVLTPLIKDIQELIAKSNVDYI 81 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhCCCCceEEECCEEcccCchhhhhhhhccCCh-hhhhhHHHHHHHHHHHcCCCceEE
Confidence 478999999999999999999999963 22222211 12333444333 2223333333333222111124 4
Q ss_pred EEcCcccH---HHHhhcCCCcEEEEEecCHHHHHHHHhcccccccCCCccccccccccCCCCCCCCCCCCCCCCCccccC
Q 022951 144 ILDGFPRT---EILEGVTDIDLVINLKLREEALLAKCLGRRICSECGGNYNVACIDIKGENGNPGMYMGPLLPPPHCASK 220 (289)
Q Consensus 144 Ildg~p~~---~~l~~~~~~d~vI~Ld~~~e~l~~Rl~~R~~~~~~g~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (289)
|+|+ |.. ..+.. .+|++|||++|.+++++|+..|...
T Consensus 82 ivd~-~~~~~~~~~~~--~~d~~i~l~~~~~~~~~R~~~R~~~------------------------------------- 121 (182)
T PRK08233 82 IVDY-PFAYLNSEMRQ--FIDVTIFIDTPLDIAMARRILRDFK------------------------------------- 121 (182)
T ss_pred EEee-ehhhccHHHHH--HcCEEEEEcCCHHHHHHHHHHHHhh-------------------------------------
Confidence 5554 333 22222 2699999999999999998877421
Q ss_pred ccccCCCcHHHHHHHHHHHHHhchHHH-HHHHH--cCcEEEEeCCCCcccHHHHHHHHhccC
Q 022951 221 LITRSDDKEEVVRERLRIYNEKSRPVE-EFYRR--RGKLLEFDLPGGIPESWPKLLQALNLE 279 (289)
Q Consensus 221 L~~r~~d~~~~~~~rl~~y~~~~~~l~-~~y~~--~~~l~~id~~~~~~ev~~~i~~~l~~~ 279 (289)
+++.+.+.+++..|.....+.. .++.. ....+.||++.++++++.+|.+.|...
T Consensus 122 -----~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~vId~~~~~e~i~~~i~~~l~~~ 178 (182)
T PRK08233 122 -----EDTGNEIHNDLKHYLNYARPLYLEALHTVKPNADIVLDGALSVEEIINQIEEELYRR 178 (182)
T ss_pred -----hccccchhhHHHHHHHHHHHHHHHHhhcCccCCeEEEcCCCCHHHHHHHHHHHHHhC
Confidence 1112234555666665444331 11111 234677999999999999999998754
No 33
>PRK13975 thymidylate kinase; Provisional
Probab=99.57 E-value=1.8e-13 Score=117.42 Aligned_cols=161 Identities=24% Similarity=0.293 Sum_probs=98.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhCCCe--eeh----HHHHHHHHHcCCccCHHHHHHHH-H---H---HHHcccccCCc
Q 022951 75 VQWVFLGCPGVGKGTYASRLSNLLGVPH--IAT----GDLLDEIVSQGKLVSDEIIINLL-S---K---RLEAGEAKGEA 141 (289)
Q Consensus 75 ~~Ivl~GppGsGKSTlak~La~~lg~~~--i~~----d~l~~~~l~~g~~v~~~~~~~ll-~---~---~l~~~~~~~~~ 141 (289)
++|+|.|++||||||+++.|+++++..+ ... +..+++++..+ ......+..++ . + .+... .. ..
T Consensus 3 ~~I~ieG~~GsGKtT~~~~L~~~l~~~~~~~~~~~~~g~~ir~~~~~~-~~~~~~~~~~f~~~r~~~~~~i~~~-~~-~~ 79 (196)
T PRK13975 3 KFIVFEGIDGSGKTTQAKLLAEKLNAFWTCEPTDGKIGKLIREILSGS-KCDKETLALLFAADRVEHVKEIEED-LK-KR 79 (196)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCCeeECCCCChHHHHHHHHHccC-CCCHHHHHHHHHHHHHHHHHHHHHH-Hc-CC
Confidence 6899999999999999999999998433 232 34455555544 22222111111 0 1 11111 11 24
Q ss_pred eEEEcCcccH------------HH---Hhh-cCCCcEEEEEecCHHHHHHHHhcccccccCCCccccccccccCCCCCCC
Q 022951 142 GFILDGFPRT------------EI---LEG-VTDIDLVINLKLREEALLAKCLGRRICSECGGNYNVACIDIKGENGNPG 205 (289)
Q Consensus 142 g~Ildg~p~~------------~~---l~~-~~~~d~vI~Ld~~~e~l~~Rl~~R~~~~~~g~~y~~~~~~~~~~~~~~~ 205 (289)
.+|+|+|... +. +.. ...||++|||++|++.+.+|+..|...
T Consensus 80 ~vi~DRy~~S~~a~~~~~g~~~~~~~~~~~~~~~pd~vi~L~~~~e~~~~Rl~~r~~~---------------------- 137 (196)
T PRK13975 80 DVVCDRYVYSSIAYQSVQGIDEDFIYSINRYAKKPDLVFLLDVDIEEALKRMETRDKE---------------------- 137 (196)
T ss_pred EEEEECchhHHHHHhcccCCCHHHHHHHHhCCCCCCEEEEEcCCHHHHHHHHhccCcc----------------------
Confidence 7899976443 11 111 235899999999999999999988411
Q ss_pred CCCCCCCCCCccccCccccCCCcHHHHHHHHHHHHHhchHHHHHHHHcCcEEEEeCC-CCcccHHHHHHHHhccCCc
Q 022951 206 MYMGPLLPPPHCASKLITRSDDKEEVVRERLRIYNEKSRPVEEFYRRRGKLLEFDLP-GGIPESWPKLLQALNLEDP 281 (289)
Q Consensus 206 ~~~~~~~~~~~~~~~L~~r~~d~~~~~~~rl~~y~~~~~~l~~~y~~~~~l~~id~~-~~~~ev~~~i~~~l~~~~~ 281 (289)
..+..+.+++..+.|.+... ..+|.....++.||++ .++++++.+|.+.|...+.
T Consensus 138 -------------------~~~~~~~~~~~~~~y~~~~~--~~~~~~~~~~~~Id~~~~~~eev~~~I~~~i~~~~~ 193 (196)
T PRK13975 138 -------------------IFEKKEFLKKVQEKYLELAN--NEKFMPKYGFIVIDTTNKSIEEVFNEILNKIKDKIP 193 (196)
T ss_pred -------------------ccchHHHHHHHHHHHHHHHh--hcccCCcCCEEEEECCCCCHHHHHHHHHHHHHHhCC
Confidence 01123444455555555433 2222223458999986 8999999999999876553
No 34
>PRK08118 topology modulation protein; Reviewed
Probab=99.55 E-value=2.3e-14 Score=120.65 Aligned_cols=99 Identities=24% Similarity=0.347 Sum_probs=76.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhCCCeeehHHHHHHHHHcCCccCHHHHHHHHHHHHHcccccCCceEEEcC-cccHHH
Q 022951 75 VQWVFLGCPGVGKGTYASRLSNLLGVPHIATGDLLDEIVSQGKLVSDEIIINLLSKRLEAGEAKGEAGFILDG-FPRTEI 153 (289)
Q Consensus 75 ~~Ivl~GppGsGKSTlak~La~~lg~~~i~~d~l~~~~l~~g~~v~~~~~~~ll~~~l~~~~~~~~~g~Ildg-~p~~~~ 153 (289)
++|+|+|+|||||||+|+.|++.+++++++.|+++.. .....++++.+..+++..+. ..+||+|| |+.+.
T Consensus 2 ~rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~l~~~--~~w~~~~~~~~~~~~~~~~~------~~~wVidG~~~~~~- 72 (167)
T PRK08118 2 KKIILIGSGGSGKSTLARQLGEKLNIPVHHLDALFWK--PNWEGVPKEEQITVQNELVK------EDEWIIDGNYGGTM- 72 (167)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCceecchhhcc--cCCcCCCHHHHHHHHHHHhc------CCCEEEeCCcchHH-
Confidence 5799999999999999999999999999999988732 22345666666666655443 24799999 55441
Q ss_pred HhhcCCCcEEEEEecCHHHHHHHHhcccc
Q 022951 154 LEGVTDIDLVINLKLREEALLAKCLGRRI 182 (289)
Q Consensus 154 l~~~~~~d~vI~Ld~~~e~l~~Rl~~R~~ 182 (289)
-..+..+|.+||||+|.+.++.|+.+|..
T Consensus 73 ~~~l~~~d~vi~Ld~p~~~~~~R~~~R~~ 101 (167)
T PRK08118 73 DIRLNAADTIIFLDIPRTICLYRAFKRRV 101 (167)
T ss_pred HHHHHhCCEEEEEeCCHHHHHHHHHHHHH
Confidence 01223479999999999999999999965
No 35
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=99.55 E-value=5.5e-14 Score=128.56 Aligned_cols=155 Identities=15% Similarity=0.166 Sum_probs=100.4
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHHHh-CCCeeehHHHHHHHHHcC---Ccc-C---HHHHHHHHHHHHHcccccCCceEEE
Q 022951 74 HVQWVFLGCPGVGKGTYASRLSNLL-GVPHIATGDLLDEIVSQG---KLV-S---DEIIINLLSKRLEAGEAKGEAGFIL 145 (289)
Q Consensus 74 ~~~Ivl~GppGsGKSTlak~La~~l-g~~~i~~d~l~~~~l~~g---~~v-~---~~~~~~ll~~~l~~~~~~~~~g~Il 145 (289)
+++|+|+|+|||||||+|+.|++++ ++.+++.|++.+.+...+ ... . ...+.......+...... +..+|+
T Consensus 2 ~~liil~G~pGSGKSTla~~L~~~~~~~~~l~~D~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-g~~vIi 80 (300)
T PHA02530 2 MKIILTVGVPGSGKSTWAREFAAKNPKAVNVNRDDLRQSLFGHGEWGEYKFTKEKEDLVTKAQEAAALAALKS-GKSVII 80 (300)
T ss_pred cEEEEEEcCCCCCHHHHHHHHHHHCCCCEEEeccHHHHHhcCCCcccccccChHHHHHHHHHHHHHHHHHHHc-CCeEEE
Confidence 3678899999999999999999999 899999988765443221 111 1 112222222222221111 458999
Q ss_pred cCcccH----HHHhhc----CCCcEEEEEecCHHHHHHHHhcccccccCCCccccccccccCCCCCCCCCCCCCCCCCcc
Q 022951 146 DGFPRT----EILEGV----TDIDLVINLKLREEALLAKCLGRRICSECGGNYNVACIDIKGENGNPGMYMGPLLPPPHC 217 (289)
Q Consensus 146 dg~p~~----~~l~~~----~~~d~vI~Ld~~~e~l~~Rl~~R~~~~~~g~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (289)
|+++.. +.+..+ ...-.+|+|++|.+++.+|+.+|..+.
T Consensus 81 d~~~~~~~~~~~~~~la~~~~~~~~~v~l~~~~e~~~~R~~~R~~~~--------------------------------- 127 (300)
T PHA02530 81 SDTNLNPERRRKWKELAKELGAEFEEKVFDVPVEELVKRNRKRGERA--------------------------------- 127 (300)
T ss_pred eCCCCCHHHHHHHHHHHHHcCCeEEEEEeCCCHHHHHHHHHccCcCC---------------------------------
Confidence 986655 222221 112337999999999999999995321
Q ss_pred ccCccccCCCcHHHHHHHHHHHHHhchHHHHHHHHcCcEEEEeCCCCcccH
Q 022951 218 ASKLITRSDDKEEVVRERLRIYNEKSRPVEEFYRRRGKLLEFDLPGGIPES 268 (289)
Q Consensus 218 ~~~L~~r~~d~~~~~~~rl~~y~~~~~~l~~~y~~~~~l~~id~~~~~~ev 268 (289)
-+++..+...+|++.|.....|+...|....+++.+|.++++.++
T Consensus 128 ------~~~~~i~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~D~dgtl~~~ 172 (300)
T PHA02530 128 ------VPEDVLRSMFKQMKEYRGLVWPVYTADPGLPKAVIFDIDGTLAKM 172 (300)
T ss_pred ------CCHHHHHHHHHHHHHhcCCCCceeccCCCCCCEEEEECCCcCcCC
Confidence 012233334488888888888886666555678889988887653
No 36
>COG3265 GntK Gluconate kinase [Carbohydrate transport and metabolism]
Probab=99.54 E-value=1.2e-13 Score=111.90 Aligned_cols=149 Identities=20% Similarity=0.215 Sum_probs=107.2
Q ss_pred EcCCCCCHHHHHHHHHHHhCCCeeehHHHH----HHHHHcCCccCHHH---HHHHHHHHHHcccccCCceEEEcCcccH-
Q 022951 80 LGCPGVGKGTYASRLSNLLGVPHIATGDLL----DEIVSQGKLVSDEI---IINLLSKRLEAGEAKGEAGFILDGFPRT- 151 (289)
Q Consensus 80 ~GppGsGKSTlak~La~~lg~~~i~~d~l~----~~~l~~g~~v~~~~---~~~ll~~~l~~~~~~~~~g~Ildg~p~~- 151 (289)
.|.+||||||+++.||+++|+.+++.|+++ .+.|..|.++.|+. +.+.+...+......+..++|...-.+.
T Consensus 1 MGVsG~GKStvg~~lA~~lg~~fidGDdlHp~aNi~KM~~GiPL~DdDR~pWL~~l~~~~~~~~~~~~~~vi~CSALKr~ 80 (161)
T COG3265 1 MGVSGSGKSTVGSALAERLGAKFIDGDDLHPPANIEKMSAGIPLNDDDRWPWLEALGDAAASLAQKNKHVVIACSALKRS 80 (161)
T ss_pred CCCCccCHHHHHHHHHHHcCCceecccccCCHHHHHHHhCCCCCCcchhhHHHHHHHHHHHHhhcCCCceEEecHHHHHH
Confidence 489999999999999999999999999998 56788999998865 3333444444433332335555433222
Q ss_pred --HHHhhcCCCcEEEEEecCHHHHHHHHhcccccccCCCccccccccccCCCCCCCCCCCCCCCCCccccCccccCCCcH
Q 022951 152 --EILEGVTDIDLVINLKLREEALLAKCLGRRICSECGGNYNVACIDIKGENGNPGMYMGPLLPPPHCASKLITRSDDKE 229 (289)
Q Consensus 152 --~~l~~~~~~d~vI~Ld~~~e~l~~Rl~~R~~~~~~g~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~r~~d~~ 229 (289)
+.|..-..--.+|||+.+.+.+++|+..|.-| |||.
T Consensus 81 YRD~LR~~~~~~~Fv~L~g~~~~i~~Rm~~R~gH-----------------------FM~~------------------- 118 (161)
T COG3265 81 YRDLLREANPGLRFVYLDGDFDLILERMKARKGH-----------------------FMPA------------------- 118 (161)
T ss_pred HHHHHhccCCCeEEEEecCCHHHHHHHHHhcccC-----------------------CCCH-------------------
Confidence 44544433456999999999999999999755 6664
Q ss_pred HHHHHHHHHHHHhchHHHHHHHHcCcEEEEeCCCCcccHHHHHHHHhcc
Q 022951 230 EVVRERLRIYNEKSRPVEEFYRRRGKLLEFDLPGGIPESWPKLLQALNL 278 (289)
Q Consensus 230 ~~~~~rl~~y~~~~~~l~~~y~~~~~l~~id~~~~~~ev~~~i~~~l~~ 278 (289)
..++.+++..+.--. ...++.||.+.+++++.+++.+.|..
T Consensus 119 ~ll~SQfa~LE~P~~--------de~vi~idi~~~~e~vv~~~~~~l~~ 159 (161)
T COG3265 119 SLLDSQFATLEEPGA--------DEDVLTIDIDQPPEEVVAQALAWLKE 159 (161)
T ss_pred HHHHHHHHHhcCCCC--------CCCEEEeeCCCCHHHHHHHHHHHHhc
Confidence 556666655443211 12589999999999999999988765
No 37
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=99.54 E-value=2.1e-13 Score=114.72 Aligned_cols=157 Identities=22% Similarity=0.162 Sum_probs=93.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhCCCeeehHHHHHHHHHcCCcc-------CHHHHHHHHHHHHHcccccCCceEEEcC
Q 022951 75 VQWVFLGCPGVGKGTYASRLSNLLGVPHIATGDLLDEIVSQGKLV-------SDEIIINLLSKRLEAGEAKGEAGFILDG 147 (289)
Q Consensus 75 ~~Ivl~GppGsGKSTlak~La~~lg~~~i~~d~l~~~~l~~g~~v-------~~~~~~~ll~~~l~~~~~~~~~g~Ildg 147 (289)
..|+|+|++||||||+++.||+.+|+++++.|.+++... |..+ ..+.+.+.-...+.... . ...+|-.|
T Consensus 3 ~~i~~~G~~GsGKst~~~~la~~lg~~~~d~D~~~~~~~--g~~~~~~~~~~g~~~~~~~e~~~~~~~~-~-~~~vi~~g 78 (171)
T PRK03731 3 QPLFLVGARGCGKTTVGMALAQALGYRFVDTDQWLQSTS--NMTVAEIVEREGWAGFRARESAALEAVT-A-PSTVIATG 78 (171)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCCCEEEccHHHHHHh--CCCHHHHHHHHCHHHHHHHHHHHHHHhc-C-CCeEEECC
Confidence 358889999999999999999999999999998874432 2111 12222222222232211 1 12333333
Q ss_pred --cccH-HHHhhcCCCcEEEEEecCHHHHHHHHhcccccccCCCccccccccccCCCCCCCCCCCCCCCCCccccCcccc
Q 022951 148 --FPRT-EILEGVTDIDLVINLKLREEALLAKCLGRRICSECGGNYNVACIDIKGENGNPGMYMGPLLPPPHCASKLITR 224 (289)
Q Consensus 148 --~p~~-~~l~~~~~~d~vI~Ld~~~e~l~~Rl~~R~~~~~~g~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~r 224 (289)
+... +..+.+...+++|||++|++.+.+|+..|..+. ++ ... .. .+
T Consensus 79 gg~vl~~~~~~~l~~~~~~v~l~~~~~~~~~Rl~~r~~~~--~r-p~~------------------------~~----~~ 127 (171)
T PRK03731 79 GGIILTEENRHFMRNNGIVIYLCAPVSVLANRLEANPEED--QR-PTL------------------------TG----KP 127 (171)
T ss_pred CCccCCHHHHHHHHhCCEEEEEECCHHHHHHHHccccccc--cC-CcC------------------------CC----CC
Confidence 2222 222223346789999999999999998764210 00 000 00 00
Q ss_pred -CCCcHHHHHHHHHHHHHhchHHHHHHHHcCcEEEEeCCCCcccHHHHHHHHhcc
Q 022951 225 -SDDKEEVVRERLRIYNEKSRPVEEFYRRRGKLLEFDLPGGIPESWPKLLQALNL 278 (289)
Q Consensus 225 -~~d~~~~~~~rl~~y~~~~~~l~~~y~~~~~l~~id~~~~~~ev~~~i~~~l~~ 278 (289)
.++..+.+++|...|.+. . .+.||+++++++++.+|.+.|.+
T Consensus 128 ~~~~~~~~~~~r~~~y~~~-----------a-~~~Id~~~~~e~v~~~i~~~l~~ 170 (171)
T PRK03731 128 ISEEVAEVLAEREALYREV-----------A-HHIIDATQPPSQVVSEILSALAQ 170 (171)
T ss_pred hHHHHHHHHHHHHHHHHHh-----------C-CEEEcCCCCHHHHHHHHHHHHhc
Confidence 022234444444444432 1 37899999999999999988853
No 38
>PRK04040 adenylate kinase; Provisional
Probab=99.53 E-value=6.6e-13 Score=113.93 Aligned_cols=161 Identities=20% Similarity=0.267 Sum_probs=102.8
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHHHh--CCCeeehHHHHHHHHHcCCcc-CH-----------HHHHHHHHHHHHcccccC
Q 022951 74 HVQWVFLGCPGVGKGTYASRLSNLL--GVPHIATGDLLDEIVSQGKLV-SD-----------EIIINLLSKRLEAGEAKG 139 (289)
Q Consensus 74 ~~~Ivl~GppGsGKSTlak~La~~l--g~~~i~~d~l~~~~l~~g~~v-~~-----------~~~~~ll~~~l~~~~~~~ 139 (289)
+++|+|+|+|||||||+++.|++++ ++.+++.++++.+........ .. ..+..+....+.... .
T Consensus 2 ~~~i~v~G~pG~GKtt~~~~l~~~l~~~~~~~~~g~~~~~~a~~~g~~~~~d~~r~l~~~~~~~~~~~a~~~i~~~~--~ 79 (188)
T PRK04040 2 MKVVVVTGVPGVGKTTVLNKALEKLKEDYKIVNFGDVMLEVAKEEGLVEHRDEMRKLPPEEQKELQREAAERIAEMA--G 79 (188)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHhccCCeEEecchHHHHHHHHcCCCCCHHHHhhCChhhhHHHHHHHHHHHHHhh--c
Confidence 4789999999999999999999999 899999999985544332221 11 112223333333321 1
Q ss_pred CceEEEcCcc--cH----------HHHhhcCCCcEEEEEecCHHHHHHHHhcccccccCCCccccccccccCCCCCCCCC
Q 022951 140 EAGFILDGFP--RT----------EILEGVTDIDLVINLKLREEALLAKCLGRRICSECGGNYNVACIDIKGENGNPGMY 207 (289)
Q Consensus 140 ~~g~Ildg~p--~~----------~~l~~~~~~d~vI~Ld~~~e~l~~Rl~~R~~~~~~g~~y~~~~~~~~~~~~~~~~~ 207 (289)
+..+|+||.. ++ +.++.+ .||.+|+|+++++.+++|......
T Consensus 80 ~~~~~~~~h~~i~~~~g~~~~~~~~~~~~l-~pd~ii~l~a~p~~i~~Rrl~d~~------------------------- 133 (188)
T PRK04040 80 EGPVIVDTHATIKTPAGYLPGLPEWVLEEL-NPDVIVLIEADPDEILMRRLRDET------------------------- 133 (188)
T ss_pred CCCEEEeeeeeeccCCCCcCCCCHHHHhhc-CCCEEEEEeCCHHHHHHHHhcccc-------------------------
Confidence 3458999822 11 344444 699999999999999998874200
Q ss_pred CCCCCCCCccccCccccCCCcHHHHHHHHHHHHHhchHHHHHHHHcCcEEEEeCCCCcccHHHHHHHHhc
Q 022951 208 MGPLLPPPHCASKLITRSDDKEEVVRERLRIYNEKSRPVEEFYRRRGKLLEFDLPGGIPESWPKLLQALN 277 (289)
Q Consensus 208 ~~~~~~~~~~~~~L~~r~~d~~~~~~~rl~~y~~~~~~l~~~y~~~~~l~~id~~~~~~ev~~~i~~~l~ 277 (289)
-.|..++.+.++.+++........ ..++.....++.+|-++.+++.+.+|.++|.
T Consensus 134 --------------R~R~~es~e~I~~~~~~a~~~a~~-~a~~~g~~~~iI~N~d~~~e~a~~~i~~ii~ 188 (188)
T PRK04040 134 --------------RRRDVETEEDIEEHQEMNRAAAMA-YAVLTGATVKIVENREGLLEEAAEEIVEVLR 188 (188)
T ss_pred --------------cCCCCCCHHHHHHHHHHHHHHHHH-HHHhcCCeEEEEECCCCCHHHHHHHHHHHhC
Confidence 013455677777777665553221 1112222345566666669999999988763
No 39
>KOG3877 consensus NADH:ubiquinone oxidoreductase, NDUFA10/42kDa subunit [Energy production and conversion]
Probab=99.52 E-value=3.3e-13 Score=119.40 Aligned_cols=145 Identities=19% Similarity=0.160 Sum_probs=93.0
Q ss_pred HhhhccCCCCCCCCchhhccccccCccccCCCccccCCCCCCCceEEEEEcCCCCCHHHHHHHHHHHhCCCeee---hHH
Q 022951 31 SRALSTSCENTGIDPKAKAGAAAALPLNNNNSKKKKEGKGEGKHVQWVFLGCPGVGKGTYASRLSNLLGVPHIA---TGD 107 (289)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ivl~GppGsGKSTlak~La~~lg~~~i~---~d~ 107 (289)
|..+.+.+.-++..|-| +....-.......+++++.++..++.+|++.|+.|+|||++||.||+++|+.|+. +|+
T Consensus 30 g~~~rg~~r~ps~~p~p--~~~k~y~~~~~~l~Dktskrf~enSkvI~VeGnI~sGK~klAKelAe~Lgf~hfP~~~~d~ 107 (393)
T KOG3877|consen 30 GVVHRGLLRLPSEHPEP--WDYKHYFNYIDGLKDKTSKRFHENSKVIVVEGNIGSGKTKLAKELAEQLGFVHFPEFRMDD 107 (393)
T ss_pred ceeecCCccCCccCCCC--cccccccchhhhhcchhhhhhcccceEEEEeCCcccCchhHHHHHHHHhCCcccccccccc
Confidence 34455544444444434 3322223334456788999999999999999999999999999999999998875 444
Q ss_pred HH--------H----------------HH-HHcCCccCHHH-----------HHHHHHHHHHcccccCCceEEEcCcccH
Q 022951 108 LL--------D----------------EI-VSQGKLVSDEI-----------IINLLSKRLEAGEAKGEAGFILDGFPRT 151 (289)
Q Consensus 108 l~--------~----------------~~-l~~g~~v~~~~-----------~~~ll~~~l~~~~~~~~~g~Ildg~p~~ 151 (289)
++ + .+ .+.....+... ....+++.+.. ++|+||+..|.+
T Consensus 108 iyvdsyg~D~r~l~~~~p~~cr~~di~~Fy~dPS~dlsa~~Q~r~y~~R~~QY~dAL~HiL~T-----GQGVVLERsp~S 182 (393)
T KOG3877|consen 108 IYVDSYGNDLRNLYNKFPARCRLPDISMFYKDPSGDLSAAMQDRIYNCRFDQYLDALAHILNT-----GQGVVLERSPHS 182 (393)
T ss_pred eeecccCccchhccccCCcccCchhHHHhccCCCccHHHHHHHHHHHhHHHHHHHHHHHHHhc-----CCeEEEecCcch
Confidence 44 0 00 01111111111 12333444433 569999986655
Q ss_pred -----H----------------------HHhhcCCCcEEEEEecCHHHHHHHHhcccc
Q 022951 152 -----E----------------------ILEGVTDIDLVINLKLREEALLAKCLGRRI 182 (289)
Q Consensus 152 -----~----------------------~l~~~~~~d~vI~Ld~~~e~l~~Rl~~R~~ 182 (289)
+ .+-.+..|++|||||+|...+++++++|+.
T Consensus 183 DFVF~eAM~~qgyi~~~~~~hYnevr~nti~~ll~PHLViYld~Pv~~v~~~Ik~rg~ 240 (393)
T KOG3877|consen 183 DFVFAEAMRDQGYIGHEYFKHYNEVRKNTIPQLLWPHLVIYLDTPVNKVLENIKRRGN 240 (393)
T ss_pred hHHHHHHHHhcCcchhHHHHHHHHHHhhhhhhhcCccEEEEEcCCcHHHHHHHHhcCC
Confidence 1 111234599999999999999999998853
No 40
>PRK13946 shikimate kinase; Provisional
Probab=99.52 E-value=9e-13 Score=112.55 Aligned_cols=161 Identities=16% Similarity=0.163 Sum_probs=96.1
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhCCCeeehHHHHHHHHHcCCccC-------HHHHHHHHHHHHHcccccCCceEEE
Q 022951 73 KHVQWVFLGCPGVGKGTYASRLSNLLGVPHIATGDLLDEIVSQGKLVS-------DEIIINLLSKRLEAGEAKGEAGFIL 145 (289)
Q Consensus 73 ~~~~Ivl~GppGsGKSTlak~La~~lg~~~i~~d~l~~~~l~~g~~v~-------~~~~~~ll~~~l~~~~~~~~~g~Il 145 (289)
.++.|+|+|++||||||+++.||+.+|+++++.|.+++... |..+. .+.+...-...+...... +..+|.
T Consensus 9 ~~~~I~l~G~~GsGKsti~~~LA~~Lg~~~id~D~~~~~~~--g~~~~e~~~~~ge~~~~~~e~~~l~~l~~~-~~~Vi~ 85 (184)
T PRK13946 9 GKRTVVLVGLMGAGKSTVGRRLATMLGLPFLDADTEIERAA--RMTIAEIFAAYGEPEFRDLERRVIARLLKG-GPLVLA 85 (184)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHcCCCeECcCHHHHHHh--CCCHHHHHHHHCHHHHHHHHHHHHHHHHhc-CCeEEE
Confidence 35689999999999999999999999999999998774432 22111 111211112222221111 234555
Q ss_pred cCc---ccHHHHhhcCCCcEEEEEecCHHHHHHHHhcccccccCCCccccccccccCCCCCCCCCCCCCCCCCccccCcc
Q 022951 146 DGF---PRTEILEGVTDIDLVINLKLREEALLAKCLGRRICSECGGNYNVACIDIKGENGNPGMYMGPLLPPPHCASKLI 222 (289)
Q Consensus 146 dg~---p~~~~l~~~~~~d~vI~Ld~~~e~l~~Rl~~R~~~~~~g~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~ 222 (289)
.|. ...+..+.+....++|||++|.+.+.+|+..|..++ +.
T Consensus 86 ~ggg~~~~~~~r~~l~~~~~~v~L~a~~e~~~~Rl~~r~~rp------------------------------------~~ 129 (184)
T PRK13946 86 TGGGAFMNEETRAAIAEKGISVWLKADLDVLWERVSRRDTRP------------------------------------LL 129 (184)
T ss_pred CCCCCcCCHHHHHHHHcCCEEEEEECCHHHHHHHhcCCCCCC------------------------------------cC
Confidence 542 222333333345789999999999999998774221 01
Q ss_pred ccCCCcHHHHHHHHHHHHHhchHHHHHHHHcCcEEEEeCCCCcccHHHHHHHHhccCCc
Q 022951 223 TRSDDKEEVVRERLRIYNEKSRPVEEFYRRRGKLLEFDLPGGIPESWPKLLQALNLEDP 281 (289)
Q Consensus 223 ~r~~d~~~~~~~rl~~y~~~~~~l~~~y~~~~~l~~id~~~~~~ev~~~i~~~l~~~~~ 281 (289)
. ..+..+.+++.++. ...+|.+ ..++....+.+++++++.|.+.|.....
T Consensus 130 ~-~~~~~~~i~~~~~~-------R~~~y~~-~dl~i~~~~~~~~~~~~~i~~~i~~~~~ 179 (184)
T PRK13946 130 R-TADPKETLARLMEE-------RYPVYAE-ADLTVASRDVPKEVMADEVIEALAAYLE 179 (184)
T ss_pred C-CCChHHHHHHHHHH-------HHHHHHh-CCEEEECCCCCHHHHHHHHHHHHHHhhc
Confidence 0 01112223322221 1234554 3455556678899999999999977553
No 41
>PRK06762 hypothetical protein; Provisional
Probab=99.51 E-value=1.1e-12 Score=109.63 Aligned_cols=151 Identities=17% Similarity=0.148 Sum_probs=94.5
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHHHh--CCCeeehHHHHHHHHHcC---CccCHHHHHHHHHHHHHcccccCCceEEEcCc
Q 022951 74 HVQWVFLGCPGVGKGTYASRLSNLL--GVPHIATGDLLDEIVSQG---KLVSDEIIINLLSKRLEAGEAKGEAGFILDGF 148 (289)
Q Consensus 74 ~~~Ivl~GppGsGKSTlak~La~~l--g~~~i~~d~l~~~~l~~g---~~v~~~~~~~ll~~~l~~~~~~~~~g~Ildg~ 148 (289)
+++|+|+|+|||||||+|+.|++.+ ++.+++.|.+.+.+.... .....+.+.......+.. +..+|+|+.
T Consensus 2 ~~li~i~G~~GsGKST~A~~L~~~l~~~~~~i~~D~~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~-----g~~vild~~ 76 (166)
T PRK06762 2 TTLIIIRGNSGSGKTTIAKQLQERLGRGTLLVSQDVVRRDMLRVKDGPGNLSIDLIEQLVRYGLGH-----CEFVILEGI 76 (166)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCeEEecHHHHHHHhccccCCCCCcCHHHHHHHHHHHHhC-----CCEEEEchh
Confidence 4689999999999999999999998 567788877765443211 112222223332222221 357899984
Q ss_pred c-cH---HHHh----hcCCCcEEEEEecCHHHHHHHHhcccccccCCCccccccccccCCCCCCCCCCCCCCCCCccccC
Q 022951 149 P-RT---EILE----GVTDIDLVINLKLREEALLAKCLGRRICSECGGNYNVACIDIKGENGNPGMYMGPLLPPPHCASK 220 (289)
Q Consensus 149 p-~~---~~l~----~~~~~d~vI~Ld~~~e~l~~Rl~~R~~~~~~g~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (289)
. .. ..++ ....+..+|||++|.+++++|...|....
T Consensus 77 ~~~~~~~~~~~~l~~~~~~~~~~v~Ldap~e~~~~R~~~R~~~~------------------------------------ 120 (166)
T PRK06762 77 LNSDRYGPMLKELIHLFRGNAYTYYFDLSFEETLRRHSTRPKSH------------------------------------ 120 (166)
T ss_pred hccHhHHHHHHHHHHhcCCCeEEEEEeCCHHHHHHHHhcccccc------------------------------------
Confidence 3 22 2222 22336789999999999999999885210
Q ss_pred ccccCCCcHHHHHHHHHHHHHhchHHHHHHHHcCcEEEEeCCCCcccHHHHHHHHhccC
Q 022951 221 LITRSDDKEEVVRERLRIYNEKSRPVEEFYRRRGKLLEFDLPGGIPESWPKLLQALNLE 279 (289)
Q Consensus 221 L~~r~~d~~~~~~~rl~~y~~~~~~l~~~y~~~~~l~~id~~~~~~ev~~~i~~~l~~~ 279 (289)
.-.++.++.++..... +. ....+.++.+.++++++.+|...++..
T Consensus 121 -----~~~~~~l~~~~~~~~~----~~-----~~~~~~~~~~~~~~~v~~~i~~~~~~~ 165 (166)
T PRK06762 121 -----EFGEDDMRRWWNPHDT----LG-----VIGETIFTDNLSLKDIFDAILTDIGLR 165 (166)
T ss_pred -----cCCHHHHHHHHhhcCC----cC-----CCCeEEecCCCCHHHHHHHHHHHhccC
Confidence 0124555554433221 11 012456677789999999999988754
No 42
>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor. TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).
Probab=99.50 E-value=2e-12 Score=110.34 Aligned_cols=158 Identities=22% Similarity=0.248 Sum_probs=93.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHh---CCCeeeh--------HHHHHHHHHcCC---ccCHHHH-------HHHHHHHHH
Q 022951 75 VQWVFLGCPGVGKGTYASRLSNLL---GVPHIAT--------GDLLDEIVSQGK---LVSDEII-------INLLSKRLE 133 (289)
Q Consensus 75 ~~Ivl~GppGsGKSTlak~La~~l---g~~~i~~--------d~l~~~~l~~g~---~v~~~~~-------~~ll~~~l~ 133 (289)
|+|+|.|++||||||+++.|++.+ |..++.. ++.++.++.... ..+.... ...+.+.+.
T Consensus 1 ~~I~ieG~~GsGKtT~~~~L~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ 80 (200)
T cd01672 1 MFIVFEGIDGAGKTTLIELLAERLEARGYEVVLTREPGGTPIGEAIRELLLDPEDEKMDPRAELLLFAADRAQHVEEVIK 80 (200)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCCCCchHHHHHHHHhccCccCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 579999999999999999999998 5544432 356666655432 1111110 111111121
Q ss_pred cccccCCceEEEcCcccH----------------HHH----hhcCCCcEEEEEecCHHHHHHHHhcccccccCCCccccc
Q 022951 134 AGEAKGEAGFILDGFPRT----------------EIL----EGVTDIDLVINLKLREEALLAKCLGRRICSECGGNYNVA 193 (289)
Q Consensus 134 ~~~~~~~~g~Ildg~p~~----------------~~l----~~~~~~d~vI~Ld~~~e~l~~Rl~~R~~~~~~g~~y~~~ 193 (289)
... ..+..+|+|.+... ..+ .....|+++|||+++++.+.+|+.+|....
T Consensus 81 ~~~-~~~~~vi~DR~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R~~~~--------- 150 (200)
T cd01672 81 PAL-ARGKIVLSDRFVDSSLAYQGAGRGLGEALIEALNDLATGGLKPDLTILLDIDPEVGLARIEARGRDD--------- 150 (200)
T ss_pred HHH-hCCCEEEECCCcchHHHhCccccCCCHHHHHHHHHHHhCCCCCCEEEEEeCCHHHHHHHHHhcCCcc---------
Confidence 111 11567899965433 111 112358999999999999999999885210
Q ss_pred cccccCCCCCCCCCCCCCCCCCccccCccccCCCcHHHHHHHHHHHHHhchHHHHHHHHcCcEEEEeCCCCcccHHHHHH
Q 022951 194 CIDIKGENGNPGMYMGPLLPPPHCASKLITRSDDKEEVVRERLRIYNEKSRPVEEFYRRRGKLLEFDLPGGIPESWPKLL 273 (289)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~r~~d~~~~~~~rl~~y~~~~~~l~~~y~~~~~l~~id~~~~~~ev~~~i~ 273 (289)
...+....+.+++..+.. .+...+ ...++.||++.+++++..+|.
T Consensus 151 ------------------------------~~~~~~~~~~~~~~~~y~---~~~~~~--~~~~~~id~~~~~e~i~~~i~ 195 (200)
T cd01672 151 ------------------------------RDEQEGLEFHERVREGYL---ELAAQE--PERIIVIDASQPLEEVLAEIL 195 (200)
T ss_pred ------------------------------hhhhhhHHHHHHHHHHHH---HHHHhC--CCeEEEEeCCCCHHHHHHHHH
Confidence 000111223333332222 122211 235899999999999999999
Q ss_pred HHhc
Q 022951 274 QALN 277 (289)
Q Consensus 274 ~~l~ 277 (289)
..|.
T Consensus 196 ~~i~ 199 (200)
T cd01672 196 KAIL 199 (200)
T ss_pred HHHh
Confidence 8874
No 43
>PRK13947 shikimate kinase; Provisional
Probab=99.49 E-value=8e-13 Score=110.97 Aligned_cols=103 Identities=21% Similarity=0.242 Sum_probs=63.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCeeehHHHHHHHHHcCCccC-------HHHHHHHHHHHHHcccccCCceEEEcC-
Q 022951 76 QWVFLGCPGVGKGTYASRLSNLLGVPHIATGDLLDEIVSQGKLVS-------DEIIINLLSKRLEAGEAKGEAGFILDG- 147 (289)
Q Consensus 76 ~Ivl~GppGsGKSTlak~La~~lg~~~i~~d~l~~~~l~~g~~v~-------~~~~~~ll~~~l~~~~~~~~~g~Ildg- 147 (289)
.|+|+|+|||||||+|+.||+.+|+++++.|.+++... |..+. ...+...-...+...... ...+|-.|
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~lg~~~id~d~~~~~~~--g~~~~~~~~~~ge~~~~~~e~~~~~~l~~~-~~~vi~~g~ 79 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATTLSFGFIDTDKEIEKMT--GMTVAEIFEKDGEVRFRSEEKLLVKKLARL-KNLVIATGG 79 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhCCCEEECchhhhhhc--CCcHHHHHHHhChHHHHHHHHHHHHHHhhc-CCeEEECCC
Confidence 58999999999999999999999999999998875431 22111 111111111111111111 11233222
Q ss_pred -cccH-HHHhhcCCCcEEEEEecCHHHHHHHHhccc
Q 022951 148 -FPRT-EILEGVTDIDLVINLKLREEALLAKCLGRR 181 (289)
Q Consensus 148 -~p~~-~~l~~~~~~d~vI~Ld~~~e~l~~Rl~~R~ 181 (289)
++.. +.+..+...+++|||+++++.+.+|+..|.
T Consensus 80 g~vl~~~~~~~l~~~~~vv~L~~~~~~l~~Rl~~r~ 115 (171)
T PRK13947 80 GVVLNPENVVQLRKNGVVICLKARPEVILRRVGKKK 115 (171)
T ss_pred CCcCCHHHHHHHHhCCEEEEEECCHHHHHHHhcCCC
Confidence 2222 333333345789999999999999998764
No 44
>TIGR00041 DTMP_kinase thymidylate kinase. Function: phosphorylation of DTMP to form DTDP in both de novo and salvage pathways of DTTP synthesis. Catalytic activity: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate.
Probab=99.49 E-value=1.7e-12 Score=111.27 Aligned_cols=107 Identities=22% Similarity=0.274 Sum_probs=64.7
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHHHhCC---Cee--------ehHHHHHHHHHcCC--ccCHHHH--------HHHHHHHH
Q 022951 74 HVQWVFLGCPGVGKGTYASRLSNLLGV---PHI--------ATGDLLDEIVSQGK--LVSDEII--------INLLSKRL 132 (289)
Q Consensus 74 ~~~Ivl~GppGsGKSTlak~La~~lg~---~~i--------~~d~l~~~~l~~g~--~v~~~~~--------~~ll~~~l 132 (289)
.++|+|.|++||||||+++.|++.++. .++ ..++++++++..+. ....... ...+.+.+
T Consensus 3 g~~IvieG~~GsGKsT~~~~L~~~l~~~g~~v~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~r~~~~~~~i 82 (195)
T TIGR00041 3 GMFIVIEGIDGAGKTTQANLLKKLLQENGYDVLFTREPGGTPIGEKIRELLLNENDEPLTDKAEALLFAADRHEHLEDKI 82 (195)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCCCChHHHHHHHHHcCCCccCCCHHHHHHHHHHHHHHHHHHHH
Confidence 578999999999999999999999843 222 23455666544332 1221110 11112222
Q ss_pred HcccccCCceEEEcCcccH-------------HHHh----hcCC--CcEEEEEecCHHHHHHHHhccc
Q 022951 133 EAGEAKGEAGFILDGFPRT-------------EILE----GVTD--IDLVINLKLREEALLAKCLGRR 181 (289)
Q Consensus 133 ~~~~~~~~~g~Ildg~p~~-------------~~l~----~~~~--~d~vI~Ld~~~e~l~~Rl~~R~ 181 (289)
...... +..+|+|.+..+ +.+. .+.. ||++|||++|++.+.+|+..|.
T Consensus 83 ~~~l~~-~~~VI~DR~~~s~~ay~~~~~~~~~~~~~~l~~~~~~~~~d~~i~l~~~~~~~~~R~~~r~ 149 (195)
T TIGR00041 83 KPALAE-GKLVISDRYVFSSIAYQGGARGIDEDLVLELNEDALGDMPDLTIYLDIDPEVALERLRKRG 149 (195)
T ss_pred HHHHhC-CCEEEECCcccHHHHHccccCCCCHHHHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHhcC
Confidence 211111 346788854322 1111 1223 8999999999999999999884
No 45
>PRK04182 cytidylate kinase; Provisional
Probab=99.49 E-value=1.4e-12 Score=109.99 Aligned_cols=104 Identities=26% Similarity=0.331 Sum_probs=67.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhCCCeeehHHHHHHHHHcCCccCHHH---------HHHHHHHHHHcccccCCceEEE
Q 022951 75 VQWVFLGCPGVGKGTYASRLSNLLGVPHIATGDLLDEIVSQGKLVSDEI---------IINLLSKRLEAGEAKGEAGFIL 145 (289)
Q Consensus 75 ~~Ivl~GppGsGKSTlak~La~~lg~~~i~~d~l~~~~l~~g~~v~~~~---------~~~ll~~~l~~~~~~~~~g~Il 145 (289)
|+|+|+|++||||||+|+.|++.+|+++++.+++++...........+. +...+...+...... +.++|+
T Consensus 1 ~~I~i~G~~GsGKstia~~la~~lg~~~id~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~Vi 79 (180)
T PRK04182 1 MIITISGPPGSGKTTVARLLAEKLGLKHVSAGEIFRELAKERGMSLEEFNKYAEEDPEIDKEIDRRQLEIAEK-EDNVVL 79 (180)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHcCCcEecHHHHHHHHHHHcCCCHHHHHHHhhcCchHHHHHHHHHHHHHhc-CCCEEE
Confidence 5799999999999999999999999999999888755432211110000 111222222221101 357888
Q ss_pred cCcccHHHHhhcCCCcEEEEEecCHHHHHHHHhccc
Q 022951 146 DGFPRTEILEGVTDIDLVINLKLREEALLAKCLGRR 181 (289)
Q Consensus 146 dg~p~~~~l~~~~~~d~vI~Ld~~~e~l~~Rl~~R~ 181 (289)
+|......+.. .++++|||++|.+.+.+|+..|.
T Consensus 80 ~g~~~~~~~~~--~~~~~V~l~a~~e~~~~Rl~~r~ 113 (180)
T PRK04182 80 EGRLAGWMAKD--YADLKIWLKAPLEVRAERIAERE 113 (180)
T ss_pred EEeecceEecC--CCCEEEEEECCHHHHHHHHHhcc
Confidence 87322111111 16899999999999999998874
No 46
>PRK00698 tmk thymidylate kinase; Validated
Probab=99.48 E-value=3.7e-12 Score=109.75 Aligned_cols=160 Identities=20% Similarity=0.207 Sum_probs=92.4
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHHHhCC---Ceee--------hHHHHHHHHHc--CCccCHHHHH-------HHHHHHHH
Q 022951 74 HVQWVFLGCPGVGKGTYASRLSNLLGV---PHIA--------TGDLLDEIVSQ--GKLVSDEIII-------NLLSKRLE 133 (289)
Q Consensus 74 ~~~Ivl~GppGsGKSTlak~La~~lg~---~~i~--------~d~l~~~~l~~--g~~v~~~~~~-------~ll~~~l~ 133 (289)
+++|+|.|++||||||+++.|++.++. ..+. .++.++..+.. ....+..... ..+...+.
T Consensus 3 ~~~I~ieG~~gsGKsT~~~~L~~~l~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~i~ 82 (205)
T PRK00698 3 GMFITIEGIDGAGKSTQIELLKELLEQQGRDVVFTREPGGTPLGEKLRELLLDPNEEMDDKTELLLFYAARAQHLEEVIK 82 (205)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHHHcCCceeEeeCCCCChHHHHHHHHHhccccCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 579999999999999999999998722 1111 23444455542 1222211111 11111111
Q ss_pred cccccCCceEEEcCcccH----------------HHHhh----cCCCcEEEEEecCHHHHHHHHhcccccccCCCccccc
Q 022951 134 AGEAKGEAGFILDGFPRT----------------EILEG----VTDIDLVINLKLREEALLAKCLGRRICSECGGNYNVA 193 (289)
Q Consensus 134 ~~~~~~~~g~Ildg~p~~----------------~~l~~----~~~~d~vI~Ld~~~e~l~~Rl~~R~~~~~~g~~y~~~ 193 (289)
..... +..+|+|.+... ..+.. ...||++|||++|++.+.+|+.+|...
T Consensus 83 ~~l~~-g~~vi~DR~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~pd~~i~l~~~~~~~~~Rl~~R~~~---------- 151 (205)
T PRK00698 83 PALAR-GKWVISDRFIDSSLAYQGGGRGLDIDLLLALNDFALGGFRPDLTLYLDVPPEVGLARIRARGEL---------- 151 (205)
T ss_pred HHHHC-CCEEEECCchhHHHHHCCCCCCCCHHHHHHHHHHHhCCCCCCEEEEEeCCHHHHHHHHHhcCCc----------
Confidence 11111 457899964443 11221 135999999999999999999988521
Q ss_pred cccccCCCCCCCCCCCCCCCCCccccCccccCCCcHHHHHHHHHHHHHhchHHHHHHHHcCcEEEEeCCCCcccHHHHHH
Q 022951 194 CIDIKGENGNPGMYMGPLLPPPHCASKLITRSDDKEEVVRERLRIYNEKSRPVEEFYRRRGKLLEFDLPGGIPESWPKLL 273 (289)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~r~~d~~~~~~~rl~~y~~~~~~l~~~y~~~~~l~~id~~~~~~ev~~~i~ 273 (289)
.+.++....+.+++..++.. +.+. ....++.||+++++++++.+|.
T Consensus 152 -----------------------------~~~~~~~~~~~~~~~~~y~~---~~~~--~~~~~~~Id~~~~~e~v~~~i~ 197 (205)
T PRK00698 152 -----------------------------DRIEQEGLDFFERVREGYLE---LAEK--EPERIVVIDASQSLEEVHEDIL 197 (205)
T ss_pred -----------------------------chhhhhhHHHHHHHHHHHHH---HHHh--CCCeEEEEeCCCCHHHHHHHHH
Confidence 00111112333444332221 2211 1246889999999999999999
Q ss_pred HHhcc
Q 022951 274 QALNL 278 (289)
Q Consensus 274 ~~l~~ 278 (289)
++|..
T Consensus 198 ~~i~~ 202 (205)
T PRK00698 198 AVIKA 202 (205)
T ss_pred HHHHH
Confidence 98854
No 47
>PRK00625 shikimate kinase; Provisional
Probab=99.48 E-value=5.6e-13 Score=112.85 Aligned_cols=105 Identities=18% Similarity=0.197 Sum_probs=68.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhCCCeeehHHHHHHHHHcC--CccCH-------HHHHHHHHHHHHcccccCCceEEE
Q 022951 75 VQWVFLGCPGVGKGTYASRLSNLLGVPHIATGDLLDEIVSQG--KLVSD-------EIIINLLSKRLEAGEAKGEAGFIL 145 (289)
Q Consensus 75 ~~Ivl~GppGsGKSTlak~La~~lg~~~i~~d~l~~~~l~~g--~~v~~-------~~~~~ll~~~l~~~~~~~~~g~Il 145 (289)
|.|+|+|+|||||||+++.||+++|++++++|+++++..... ..+++ +.+...-...+..... ...+|.
T Consensus 1 ~~I~LiG~pGsGKTT~~k~La~~l~~~~id~D~~I~~~~g~~~~~~i~eif~~~Ge~~fr~~E~~~l~~l~~--~~~VIs 78 (173)
T PRK00625 1 MQIFLCGLPTVGKTSFGKALAKFLSLPFFDTDDLIVSNYHGALYSSPKEIYQAYGEEGFCREEFLALTSLPV--IPSIVA 78 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCCEEEhhHHHHHHhCCCCCCCHHHHHHHHCHHHHHHHHHHHHHHhcc--CCeEEE
Confidence 469999999999999999999999999999999986533211 01111 1111111122222211 234554
Q ss_pred cC--cccH-HHHhhcCCCcEEEEEecCHHHHHHHHhccc
Q 022951 146 DG--FPRT-EILEGVTDIDLVINLKLREEALLAKCLGRR 181 (289)
Q Consensus 146 dg--~p~~-~~l~~~~~~d~vI~Ld~~~e~l~~Rl~~R~ 181 (289)
.| .... +.++.+.....+|||++|.+.+.+|+..|.
T Consensus 79 ~GGg~~~~~e~~~~l~~~~~Vv~L~~~~e~l~~Rl~~R~ 117 (173)
T PRK00625 79 LGGGTLMIEPSYAHIRNRGLLVLLSLPIATIYQRLQKRG 117 (173)
T ss_pred CCCCccCCHHHHHHHhcCCEEEEEECCHHHHHHHHhcCC
Confidence 44 2222 455555556789999999999999999874
No 48
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=99.48 E-value=1.5e-12 Score=108.62 Aligned_cols=150 Identities=23% Similarity=0.277 Sum_probs=91.4
Q ss_pred EEEEcCCCCCHHHHHHHHHHHhCCCeeehHHHHH----HHHHcCCccCH----HHHHHHHHHHHHcccccCCceEEEcCc
Q 022951 77 WVFLGCPGVGKGTYASRLSNLLGVPHIATGDLLD----EIVSQGKLVSD----EIIINLLSKRLEAGEAKGEAGFILDGF 148 (289)
Q Consensus 77 Ivl~GppGsGKSTlak~La~~lg~~~i~~d~l~~----~~l~~g~~v~~----~~~~~ll~~~l~~~~~~~~~g~Ildg~ 148 (289)
|+|+||+||||||+|+.|++.++..+++.|++.. ..+..+....+ .++..+.. .+......+...+|..++
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l~~~~v~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~Vi~~t~ 79 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRLGAKFIEGDDLHPAANIEKMSAGIPLNDDDRWPWLQNLND-ASTAAAAKNKVGIITCSA 79 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhcCCeEEeCccccChHHHHHHHcCCCCChhhHHHHHHHHHH-HHHHHHhcCCCEEEEecc
Confidence 5789999999999999999999999999988741 22233332222 22222222 222111111223444455
Q ss_pred ccH---HHHhhcCCCcEEEEEecCHHHHHHHHhcccccccCCCccccccccccCCCCCCCCCCCCCCCCCccccCccccC
Q 022951 149 PRT---EILEGVTDIDLVINLKLREEALLAKCLGRRICSECGGNYNVACIDIKGENGNPGMYMGPLLPPPHCASKLITRS 225 (289)
Q Consensus 149 p~~---~~l~~~~~~d~vI~Ld~~~e~l~~Rl~~R~~~~~~g~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~r~ 225 (289)
.+. +.+......-.+|||++|.+++.+|+..|..+
T Consensus 80 ~~~~~r~~~~~~~~~~~~i~l~~~~e~~~~R~~~R~~~------------------------------------------ 117 (163)
T TIGR01313 80 LKRHYRDILREAEPNLHFIYLSGDKDVILERMKARKGH------------------------------------------ 117 (163)
T ss_pred cHHHHHHHHHhcCCCEEEEEEeCCHHHHHHHHHhccCC------------------------------------------
Confidence 444 33433333345799999999999999988411
Q ss_pred CCcHHHHHHHHHHHHHhchHHHHHHHHcCcEEEEeCCCCcccHHHHHHHHh
Q 022951 226 DDKEEVVRERLRIYNEKSRPVEEFYRRRGKLLEFDLPGGIPESWPKLLQAL 276 (289)
Q Consensus 226 ~d~~~~~~~rl~~y~~~~~~l~~~y~~~~~l~~id~~~~~~ev~~~i~~~l 276 (289)
....+.++.++..+.... + ....++.||++++++++..++.+.|
T Consensus 118 ~~~~~~i~~~~~~~~~~~------~-~e~~~~~id~~~~~~~~~~~~~~~~ 161 (163)
T TIGR01313 118 FMKADMLESQFAALEEPL------A-DETDVLRVDIDQPLEGVEEDCIAVV 161 (163)
T ss_pred CCCHHHHHHHHHHhCCCC------C-CCCceEEEECCCCHHHHHHHHHHHH
Confidence 011244555554433210 0 1125799999999999999988776
No 49
>PRK13948 shikimate kinase; Provisional
Probab=99.45 E-value=3.6e-12 Score=108.74 Aligned_cols=101 Identities=16% Similarity=0.119 Sum_probs=66.2
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhCCCeeehHHHHHHHHH---------cCCccCHHHHHHHHHHHHHcccccCCceE
Q 022951 73 KHVQWVFLGCPGVGKGTYASRLSNLLGVPHIATGDLLDEIVS---------QGKLVSDEIIINLLSKRLEAGEAKGEAGF 143 (289)
Q Consensus 73 ~~~~Ivl~GppGsGKSTlak~La~~lg~~~i~~d~l~~~~l~---------~g~~v~~~~~~~ll~~~l~~~~~~~~~g~ 143 (289)
.+..|+|+|++||||||+++.|++.+|..++++|.++++... .|+....+...+.+...+.. ...+
T Consensus 9 ~~~~I~LiG~~GsGKSTvg~~La~~lg~~~iD~D~~ie~~~g~si~~if~~~Ge~~fR~~E~~~l~~l~~~-----~~~V 83 (182)
T PRK13948 9 PVTWVALAGFMGTGKSRIGWELSRALMLHFIDTDRYIERVTGKSIPEIFRHLGEAYFRRCEAEVVRRLTRL-----DYAV 83 (182)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHcCCCEEECCHHHHHHHhCCHHHHHHHhCHHHHHHHHHHHHHHHHhc-----CCeE
Confidence 457899999999999999999999999999999988855431 12222222222333332221 1233
Q ss_pred EEcC--cc-cHHHHhhcCCCcEEEEEecCHHHHHHHHh
Q 022951 144 ILDG--FP-RTEILEGVTDIDLVINLKLREEALLAKCL 178 (289)
Q Consensus 144 Ildg--~p-~~~~l~~~~~~d~vI~Ld~~~e~l~~Rl~ 178 (289)
|..| .+ ..+..+.+.....+|||+++.+.+.+|+.
T Consensus 84 Ia~GgG~v~~~~n~~~l~~~g~vV~L~~~~e~l~~Rl~ 121 (182)
T PRK13948 84 ISLGGGTFMHEENRRKLLSRGPVVVLWASPETIYERTR 121 (182)
T ss_pred EECCCcEEcCHHHHHHHHcCCeEEEEECCHHHHHHHhc
Confidence 3333 22 22333344445789999999999999994
No 50
>KOG3354 consensus Gluconate kinase [Carbohydrate transport and metabolism]
Probab=99.44 E-value=1.5e-12 Score=106.26 Aligned_cols=155 Identities=21% Similarity=0.262 Sum_probs=106.7
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHHHhCCCeeehHHHH----HHHHHcCCccCHHHHHHHH---HHHHHcccccCCceEEEc
Q 022951 74 HVQWVFLGCPGVGKGTYASRLSNLLGVPHIATGDLL----DEIVSQGKLVSDEIIINLL---SKRLEAGEAKGEAGFILD 146 (289)
Q Consensus 74 ~~~Ivl~GppGsGKSTlak~La~~lg~~~i~~d~l~----~~~l~~g~~v~~~~~~~ll---~~~l~~~~~~~~~g~Ild 146 (289)
+-.|++.|++||||||+++.|++++++.+++.|+++ .+.|..|.++.|+..+.-+ ...+...... ++++|+-
T Consensus 12 k~~i~vmGvsGsGKSTigk~L~~~l~~~F~dgDd~Hp~~NveKM~~GipLnD~DR~pWL~~i~~~~~~~l~~-~q~vVlA 90 (191)
T KOG3354|consen 12 KYVIVVMGVSGSGKSTIGKALSEELGLKFIDGDDLHPPANVEKMTQGIPLNDDDRWPWLKKIAVELRKALAS-GQGVVLA 90 (191)
T ss_pred ceeEEEEecCCCChhhHHHHHHHHhCCcccccccCCCHHHHHHHhcCCCCCcccccHHHHHHHHHHHHHhhc-CCeEEEE
Confidence 357899999999999999999999999999999998 6778899988875432222 2222222122 5688886
Q ss_pred Ccc--cH--HHHhhcC----------CCcEEEEEecCHHHHHHHHhcccccccCCCccccccccccCCCCCCCCCCCCCC
Q 022951 147 GFP--RT--EILEGVT----------DIDLVINLKLREEALLAKCLGRRICSECGGNYNVACIDIKGENGNPGMYMGPLL 212 (289)
Q Consensus 147 g~p--~~--~~l~~~~----------~~d~vI~Ld~~~e~l~~Rl~~R~~~~~~g~~y~~~~~~~~~~~~~~~~~~~~~~ 212 (289)
... +. +.+..-. ..-.+|+|.++.+++.+|+..|..| |||.
T Consensus 91 CSaLKk~YRdILr~sl~~gk~~~~~~~~l~fi~l~~s~evi~~Rl~~R~gH-----------------------FMp~-- 145 (191)
T KOG3354|consen 91 CSALKKKYRDILRHSLKDGKPGKCPESQLHFILLSASFEVILKRLKKRKGH-----------------------FMPA-- 145 (191)
T ss_pred hHHHHHHHHHHHHhhcccCCccCCccceEEEeeeeccHHHHHHHHhhcccc-----------------------cCCH--
Confidence 421 11 3333210 1236999999999999999999755 6664
Q ss_pred CCCccccCccccCCCcHHHHHHHHHHHHHhchHHHHHHHHcCcEEEEeCC-CCcccHHHHHHHHhcc
Q 022951 213 PPPHCASKLITRSDDKEEVVRERLRIYNEKSRPVEEFYRRRGKLLEFDLP-GGIPESWPKLLQALNL 278 (289)
Q Consensus 213 ~~~~~~~~L~~r~~d~~~~~~~rl~~y~~~~~~l~~~y~~~~~l~~id~~-~~~~ev~~~i~~~l~~ 278 (289)
+.++.+++..+.-.. +...++.|+.+ .++++++..|.+.+..
T Consensus 146 -----------------~lleSQf~~LE~p~~-------~e~div~isv~~~~~e~iv~tI~k~~~~ 188 (191)
T KOG3354|consen 146 -----------------DLLESQFATLEAPDA-------DEEDIVTISVKTYSVEEIVDTIVKMVAL 188 (191)
T ss_pred -----------------HHHHHHHHhccCCCC-------CccceEEEeeccCCHHHHHHHHHHHHHh
Confidence 456666655433211 12247888877 8899999988877654
No 51
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=99.44 E-value=4e-12 Score=105.84 Aligned_cols=96 Identities=28% Similarity=0.341 Sum_probs=67.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhCCCeeehHHHHHHH--H---Hc---CCccCHHHHHHHHHHHHHcccccCCceEEEc
Q 022951 75 VQWVFLGCPGVGKGTYASRLSNLLGVPHIATGDLLDEI--V---SQ---GKLVSDEIIINLLSKRLEAGEAKGEAGFILD 146 (289)
Q Consensus 75 ~~Ivl~GppGsGKSTlak~La~~lg~~~i~~d~l~~~~--l---~~---g~~v~~~~~~~ll~~~l~~~~~~~~~g~Ild 146 (289)
|+|+|+|.||+||||+|++|+ ++|+.+++..+++++. . +. ...+..+.....+...+. ..+.|+|
T Consensus 1 m~I~ITGTPGvGKTT~~~~L~-~lg~~~i~l~el~~e~~~~~~~de~r~s~~vD~d~~~~~le~~~~------~~~~Ivd 73 (180)
T COG1936 1 MLIAITGTPGVGKTTVCKLLR-ELGYKVIELNELAKENGLYTEYDELRKSVIVDVDKLRKRLEELLR------EGSGIVD 73 (180)
T ss_pred CeEEEeCCCCCchHHHHHHHH-HhCCceeeHHHHHHhcCCeeccCCccceEEeeHHHHHHHHHHHhc------cCCeEee
Confidence 689999999999999999999 9999999999888432 0 00 011222323333333321 2467888
Q ss_pred CcccHHHHhhcCC-CcEEEEEecCHHHHHHHHhcccc
Q 022951 147 GFPRTEILEGVTD-IDLVINLKLREEALLAKCLGRRI 182 (289)
Q Consensus 147 g~p~~~~l~~~~~-~d~vI~Ld~~~e~l~~Rl~~R~~ 182 (289)
+-.. .+.+ +|+||.|.++++.+.+||++|.-
T Consensus 74 ~H~~-----hl~~~~dlVvVLR~~p~~L~~RLk~RGy 105 (180)
T COG1936 74 SHLS-----HLLPDCDLVVVLRADPEVLYERLKGRGY 105 (180)
T ss_pred chhh-----hcCCCCCEEEEEcCCHHHHHHHHHHcCC
Confidence 6332 2333 89999999999999999999963
No 52
>TIGR02173 cyt_kin_arch cytidylate kinase, putative. Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.
Probab=99.44 E-value=7.9e-12 Score=104.54 Aligned_cols=104 Identities=25% Similarity=0.286 Sum_probs=69.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhCCCeeehHHHHHHHHHc-CCccCH--------HHHHHHHHHHHHcccccCCceEEE
Q 022951 75 VQWVFLGCPGVGKGTYASRLSNLLGVPHIATGDLLDEIVSQ-GKLVSD--------EIIINLLSKRLEAGEAKGEAGFIL 145 (289)
Q Consensus 75 ~~Ivl~GppGsGKSTlak~La~~lg~~~i~~d~l~~~~l~~-g~~v~~--------~~~~~ll~~~l~~~~~~~~~g~Il 145 (289)
|+|+|+|++||||||+|+.|++.+|+++++.++++++.... |..... ..+...+...+...... +.++|+
T Consensus 1 ~iI~i~G~~GSGKstia~~la~~lg~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~Vi 79 (171)
T TIGR02173 1 MIITISGPPGSGKTTVAKILAEKLSLKLISAGDIFRELAAKMGLDLIEFLNYAEENPEIDKKIDRRIHEIALK-EKNVVL 79 (171)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHcCCceecHHHHHHHHHHHcCCCHHHHHHHHhcCcHHHHHHHHHHHHHHhc-CCCEEE
Confidence 57999999999999999999999999999998887554332 111100 01122233322222111 357899
Q ss_pred cCcccHHHHhhcCCCcEEEEEecCHHHHHHHHhccc
Q 022951 146 DGFPRTEILEGVTDIDLVINLKLREEALLAKCLGRR 181 (289)
Q Consensus 146 dg~p~~~~l~~~~~~d~vI~Ld~~~e~l~~Rl~~R~ 181 (289)
+|......+. ..++++|||++|.+.+.+|+..|.
T Consensus 80 ~g~~~~~~~~--~~~d~~v~v~a~~~~r~~R~~~R~ 113 (171)
T TIGR02173 80 ESRLAGWIVR--EYADVKIWLKAPLEVRARRIAKRE 113 (171)
T ss_pred Eecccceeec--CCcCEEEEEECCHHHHHHHHHHcc
Confidence 9843321111 236899999999999999999884
No 53
>PRK00131 aroK shikimate kinase; Reviewed
Probab=99.44 E-value=2.7e-12 Score=107.44 Aligned_cols=106 Identities=25% Similarity=0.241 Sum_probs=65.9
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhCCCeeehHHHHHHHHHcCCccCH-------HHHHHHHHHHHHcccccCCceEEE
Q 022951 73 KHVQWVFLGCPGVGKGTYASRLSNLLGVPHIATGDLLDEIVSQGKLVSD-------EIIINLLSKRLEAGEAKGEAGFIL 145 (289)
Q Consensus 73 ~~~~Ivl~GppGsGKSTlak~La~~lg~~~i~~d~l~~~~l~~g~~v~~-------~~~~~ll~~~l~~~~~~~~~g~Il 145 (289)
+++.|+|+|+|||||||+|+.|++.+|+.+++.|++++... |..+.+ ..+.......+...... ...+|.
T Consensus 3 ~~~~i~l~G~~GsGKstla~~La~~l~~~~~d~d~~~~~~~--g~~~~~~~~~~g~~~~~~~~~~~~~~l~~~-~~~vi~ 79 (175)
T PRK00131 3 KGPNIVLIGFMGAGKSTIGRLLAKRLGYDFIDTDHLIEARA--GKSIPEIFEEEGEAAFRELEEEVLAELLAR-HNLVIS 79 (175)
T ss_pred CCCeEEEEcCCCCCHHHHHHHHHHHhCCCEEEChHHHHHHc--CCCHHHHHHHHCHHHHHHHHHHHHHHHHhc-CCCEEE
Confidence 35689999999999999999999999999999998875432 211111 11111111222211111 123444
Q ss_pred cCc--ccH-HHHhhcCCCcEEEEEecCHHHHHHHHhccc
Q 022951 146 DGF--PRT-EILEGVTDIDLVINLKLREEALLAKCLGRR 181 (289)
Q Consensus 146 dg~--p~~-~~l~~~~~~d~vI~Ld~~~e~l~~Rl~~R~ 181 (289)
.|. ... +....+....++|||++|.+.+.+|+..|.
T Consensus 80 ~g~~~~~~~~~r~~l~~~~~~v~l~~~~~~~~~R~~~~~ 118 (175)
T PRK00131 80 TGGGAVLREENRALLRERGTVVYLDASFEELLRRLRRDR 118 (175)
T ss_pred eCCCEeecHHHHHHHHhCCEEEEEECCHHHHHHHhcCCC
Confidence 341 111 222223235789999999999999998764
No 54
>PRK00081 coaE dephospho-CoA kinase; Reviewed
Probab=99.43 E-value=3.2e-12 Score=110.12 Aligned_cols=148 Identities=22% Similarity=0.221 Sum_probs=93.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhCCCeeehHHHHHHHHHcCC-------------------ccCHHH------------
Q 022951 75 VQWVFLGCPGVGKGTYASRLSNLLGVPHIATGDLLDEIVSQGK-------------------LVSDEI------------ 123 (289)
Q Consensus 75 ~~Ivl~GppGsGKSTlak~La~~lg~~~i~~d~l~~~~l~~g~-------------------~v~~~~------------ 123 (289)
.+|+|+|++||||||+++.|++ +|+++++.|++.++.+..+. .+....
T Consensus 3 ~~i~ltG~~gsGKst~~~~l~~-~g~~~i~~D~~~~~~~~~~~~~~~~i~~~fg~~~~~~~g~idr~~L~~~vf~~~~~~ 81 (194)
T PRK00081 3 LIIGLTGGIGSGKSTVANLFAE-LGAPVIDADAIAHEVVEPGGPALQAIVEAFGPEILDADGELDRAKLRELVFSDPEAR 81 (194)
T ss_pred eEEEEECCCCCCHHHHHHHHHH-cCCEEEEecHHHHHHhhccHHHHHHHHHHhCHHhcCCCCCcCHHHHHHHHhCCHHHH
Confidence 5789999999999999999998 99999999999855543222 111111
Q ss_pred ------HH----HHHHHHHHcccccCCceEEEcCcccH-HHHhhcCCCcEEEEEecCHHHHHHHHhcccccccCCCcccc
Q 022951 124 ------II----NLLSKRLEAGEAKGEAGFILDGFPRT-EILEGVTDIDLVINLKLREEALLAKCLGRRICSECGGNYNV 192 (289)
Q Consensus 124 ------~~----~ll~~~l~~~~~~~~~g~Ildg~p~~-~~l~~~~~~d~vI~Ld~~~e~l~~Rl~~R~~~~~~g~~y~~ 192 (289)
+. ..+.+.+..... ..-+|+|.-... ..+.. .+|.+|++++|.+...+|+..|.
T Consensus 82 ~~L~~i~hP~v~~~~~~~~~~~~~--~~~vv~e~pll~e~~~~~--~~D~vi~V~a~~e~~~~Rl~~R~----------- 146 (194)
T PRK00081 82 KKLEAILHPLIREEILEQLQEAES--SPYVVLDIPLLFENGLEK--LVDRVLVVDAPPETQLERLMARD----------- 146 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHccc--CCEEEEEehHhhcCCchh--hCCeEEEEECCHHHHHHHHHHcC-----------
Confidence 11 111122221111 135666652211 11112 26999999999999999999884
Q ss_pred ccccccCCCCCCCCCCCCCCCCCccccCccccCCCcHHHHHHHHHHHHHhchHHHHHHHHcCcEEEEeCCCCcccHHHHH
Q 022951 193 ACIDIKGENGNPGMYMGPLLPPPHCASKLITRSDDKEEVVRERLRIYNEKSRPVEEFYRRRGKLLEFDLPGGIPESWPKL 272 (289)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~r~~d~~~~~~~rl~~y~~~~~~l~~~y~~~~~l~~id~~~~~~ev~~~i 272 (289)
..+.+.+..|++..... ...- ... -+.|+++++++++..++
T Consensus 147 ---------------------------------~~s~e~~~~ri~~Q~~~----~~~~-~~a-d~vI~N~g~~e~l~~qv 187 (194)
T PRK00081 147 ---------------------------------GLSEEEAEAIIASQMPR----EEKL-ARA-DDVIDNNGDLEELRKQV 187 (194)
T ss_pred ---------------------------------CCCHHHHHHHHHHhCCH----HHHH-HhC-CEEEECCCCHHHHHHHH
Confidence 12346677777753321 1111 112 26788889999999999
Q ss_pred HHHhc
Q 022951 273 LQALN 277 (289)
Q Consensus 273 ~~~l~ 277 (289)
..++.
T Consensus 188 ~~i~~ 192 (194)
T PRK00081 188 ERLLQ 192 (194)
T ss_pred HHHHH
Confidence 98874
No 55
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=99.43 E-value=2.1e-12 Score=110.37 Aligned_cols=148 Identities=16% Similarity=0.162 Sum_probs=91.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhCCCeeehHHHHH----HHHHcCCccCHHHHHHH----------------------H
Q 022951 75 VQWVFLGCPGVGKGTYASRLSNLLGVPHIATGDLLD----EIVSQGKLVSDEIIINL----------------------L 128 (289)
Q Consensus 75 ~~Ivl~GppGsGKSTlak~La~~lg~~~i~~d~l~~----~~l~~g~~v~~~~~~~l----------------------l 128 (289)
.+++|+||+||||||+++.|+..++..++..+..+. ........+..+.+.+. +
T Consensus 3 ~~i~l~G~sGsGKsTl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~yg~~~~~ 82 (186)
T PRK10078 3 KLIWLMGPSGSGKDSLLAALRQREQTQLLVAHRYITRPASAGSENHIALSEQEFFTRAGQNLFALSWHANGLYYGVGIEI 82 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHhccCCCeEEEcCEECCCccchhHHhheeEcHHHHHHHHHCCchhhHHHHhCCccCCcHHH
Confidence 478999999999999999999988765555433330 00011111111111111 1
Q ss_pred HHHHHcccccCCceEEEcCcccH--HHHhhcCCCcEEEEEecCHHHHHHHHhcccccccCCCccccccccccCCCCCCCC
Q 022951 129 SKRLEAGEAKGEAGFILDGFPRT--EILEGVTDIDLVINLKLREEALLAKCLGRRICSECGGNYNVACIDIKGENGNPGM 206 (289)
Q Consensus 129 ~~~l~~~~~~~~~g~Ildg~p~~--~~l~~~~~~d~vI~Ld~~~e~l~~Rl~~R~~~~~~g~~y~~~~~~~~~~~~~~~~ 206 (289)
...+.. +..+|++|.... +..+.+.....+|||++|.+++.+|+..|..
T Consensus 83 ~~~l~~-----g~~VI~~G~~~~~~~~~~~~~~~~~vi~l~~s~e~l~~RL~~R~~------------------------ 133 (186)
T PRK10078 83 DLWLHA-----GFDVLVNGSRAHLPQARARYQSALLPVCLQVSPEILRQRLENRGR------------------------ 133 (186)
T ss_pred HHHHhC-----CCEEEEeChHHHHHHHHHHcCCCEEEEEEeCCHHHHHHHHHHhCC------------------------
Confidence 222221 346888875322 2233333456789999999999999987731
Q ss_pred CCCCCCCCCccccCccccCCCcHHHHHHHHHHHHHhchHHHHHHHHcCcEEEEeCCCCcccHHHHHHHHhccCC
Q 022951 207 YMGPLLPPPHCASKLITRSDDKEEVVRERLRIYNEKSRPVEEFYRRRGKLLEFDLPGGIPESWPKLLQALNLED 280 (289)
Q Consensus 207 ~~~~~~~~~~~~~~L~~r~~d~~~~~~~rl~~y~~~~~~l~~~y~~~~~l~~id~~~~~~ev~~~i~~~l~~~~ 280 (289)
...+.+++|++.+. +|. ...++.||.++++++++++|.++|..-.
T Consensus 134 --------------------~~~~~i~~rl~r~~--------~~~-~ad~~vi~~~~s~ee~~~~i~~~l~~~~ 178 (186)
T PRK10078 134 --------------------ENASEINARLARAA--------RYQ-PQDCHTLNNDGSLRQSVDTLLTLLHLSQ 178 (186)
T ss_pred --------------------CCHHHHHHHHHHhh--------hhc-cCCEEEEeCCCCHHHHHHHHHHHHhhcC
Confidence 12455777775432 222 2456788888899999999999996654
No 56
>PLN02924 thymidylate kinase
Probab=99.43 E-value=1.7e-11 Score=107.73 Aligned_cols=155 Identities=19% Similarity=0.191 Sum_probs=93.1
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHHHhCCCeee------------hHHHHHHHHHcCCccCHHHHHH-----HHHH--HH
Q 022951 72 GKHVQWVFLGCPGVGKGTYASRLSNLLGVPHIA------------TGDLLDEIVSQGKLVSDEIIIN-----LLSK--RL 132 (289)
Q Consensus 72 ~~~~~Ivl~GppGsGKSTlak~La~~lg~~~i~------------~d~l~~~~l~~g~~v~~~~~~~-----ll~~--~l 132 (289)
..+++|+|.|++||||||+++.|++.+....+. .++.+++++..+..+......- ..++ .+
T Consensus 14 ~~g~~IviEGiDGsGKsTq~~~L~~~l~~~g~~v~~~~ep~~~~~~g~~ir~~l~~~~~~~~~~~~llf~adR~~~~~~I 93 (220)
T PLN02924 14 SRGALIVLEGLDRSGKSTQCAKLVSFLKGLGVAAELWRFPDRTTSVGQMISAYLSNKSQLDDRAIHLLFSANRWEKRSLM 93 (220)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCCceeeeCCCCCChHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 456899999999999999999999998533222 2344566666544333322110 0011 11
Q ss_pred HcccccCCceEEEcCcccH------------HHHh----hcCCCcEEEEEecCHHHHHHHHhcccccccCCCcccccccc
Q 022951 133 EAGEAKGEAGFILDGFPRT------------EILE----GVTDIDLVINLKLREEALLAKCLGRRICSECGGNYNVACID 196 (289)
Q Consensus 133 ~~~~~~~~~g~Ildg~p~~------------~~l~----~~~~~d~vI~Ld~~~e~l~~Rl~~R~~~~~~g~~y~~~~~~ 196 (289)
.... ..+..+|+|.|..+ +.+. .+..||++||||+|++..++|...+. +
T Consensus 94 ~pal-~~g~vVI~DRy~~S~~ayq~~~g~~~~~~~~~~~~~~~PDlvi~Ld~~~~~a~~R~~~~~-~------------- 158 (220)
T PLN02924 94 ERKL-KSGTTLVVDRYSYSGVAFSAAKGLDLEWCKAPEVGLPAPDLVLYLDISPEEAAERGGYGG-E------------- 158 (220)
T ss_pred HHHH-HCCCEEEEccchhHHHHHHHhcCCCHHHHHHHHhCCCCCCEEEEEeCCHHHHHHHhccCc-c-------------
Confidence 1111 11557899986664 1122 12359999999999999999853210 0
Q ss_pred ccCCCCCCCCCCCCCCCCCccccCccccCCCcHHHHHHHHHHHHHhchHHHHHHHHcCcEEEEeCCCCcccHHHHHHHHh
Q 022951 197 IKGENGNPGMYMGPLLPPPHCASKLITRSDDKEEVVRERLRIYNEKSRPVEEFYRRRGKLLEFDLPGGIPESWPKLLQAL 276 (289)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~L~~r~~d~~~~~~~rl~~y~~~~~~l~~~y~~~~~l~~id~~~~~~ev~~~i~~~l 276 (289)
+. +.. .+.+++...+... .+ ..++.||++.++++++.+|.+.|
T Consensus 159 ---------------------------~~-E~~-~~~~rv~~~Y~~l---a~-----~~~~vIDa~~sieeV~~~I~~~I 201 (220)
T PLN02924 159 ---------------------------RY-EKL-EFQKKVAKRFQTL---RD-----SSWKIIDASQSIEEVEKKIREVV 201 (220)
T ss_pred ---------------------------cc-ccH-HHHHHHHHHHHHH---hh-----cCEEEECCCCCHHHHHHHHHHHH
Confidence 00 112 2233333322221 11 34788999999999999999988
Q ss_pred cc
Q 022951 277 NL 278 (289)
Q Consensus 277 ~~ 278 (289)
..
T Consensus 202 ~~ 203 (220)
T PLN02924 202 LD 203 (220)
T ss_pred HH
Confidence 65
No 57
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=99.42 E-value=1.1e-11 Score=102.10 Aligned_cols=103 Identities=25% Similarity=0.315 Sum_probs=70.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhCCCeeehHHHHHHHHHcCC-ccCH--------HHHHHHHHHHHHcccccCCceEEE
Q 022951 75 VQWVFLGCPGVGKGTYASRLSNLLGVPHIATGDLLDEIVSQGK-LVSD--------EIIINLLSKRLEAGEAKGEAGFIL 145 (289)
Q Consensus 75 ~~Ivl~GppGsGKSTlak~La~~lg~~~i~~d~l~~~~l~~g~-~v~~--------~~~~~ll~~~l~~~~~~~~~g~Il 145 (289)
|+|.|.|+|||||||+|+.||++||++|++.+.+.+++...-. .+.+ ..+...+........ . .+++|+
T Consensus 1 m~ItIsG~pGsG~TTva~~lAe~~gl~~vsaG~iFR~~A~e~gmsl~ef~~~AE~~p~iD~~iD~rq~e~a-~-~~nvVl 78 (179)
T COG1102 1 MVITISGLPGSGKTTVARELAEHLGLKLVSAGTIFREMARERGMSLEEFSRYAEEDPEIDKEIDRRQKELA-K-EGNVVL 78 (179)
T ss_pred CEEEeccCCCCChhHHHHHHHHHhCCceeeccHHHHHHHHHcCCCHHHHHHHHhcCchhhHHHHHHHHHHH-H-cCCeEE
Confidence 6799999999999999999999999999999999966543322 1100 011111111111111 1 357899
Q ss_pred cCcccHHHHhhcCCCcEEEEEecCHHHHHHHHhccc
Q 022951 146 DGFPRTEILEGVTDIDLVINLKLREEALLAKCLGRR 181 (289)
Q Consensus 146 dg~p~~~~l~~~~~~d~vI~Ld~~~e~l~~Rl~~R~ 181 (289)
+|-...+.+. ...|+.|||.+|.++..+|+..|-
T Consensus 79 egrLA~Wi~k--~~adlkI~L~Apl~vRa~Ria~RE 112 (179)
T COG1102 79 EGRLAGWIVR--EYADLKIWLKAPLEVRAERIAKRE 112 (179)
T ss_pred hhhhHHHHhc--cccceEEEEeCcHHHHHHHHHHhc
Confidence 8754433333 347999999999999999999883
No 58
>COG0125 Tmk Thymidylate kinase [Nucleotide transport and metabolism]
Probab=99.42 E-value=2.4e-11 Score=105.54 Aligned_cols=162 Identities=20% Similarity=0.254 Sum_probs=99.6
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHHh---CCCee--------ehHHHHHHHHHcC-CccCHHHHHH--------HHHHHH
Q 022951 73 KHVQWVFLGCPGVGKGTYASRLSNLL---GVPHI--------ATGDLLDEIVSQG-KLVSDEIIIN--------LLSKRL 132 (289)
Q Consensus 73 ~~~~Ivl~GppGsGKSTlak~La~~l---g~~~i--------~~d~l~~~~l~~g-~~v~~~~~~~--------ll~~~l 132 (289)
++++|+|.|..||||||+++.|++.+ |..++ ..++.+++++.++ ..+......- .+.+.+
T Consensus 2 ~g~fI~iEGiDGaGKTT~~~~L~~~l~~~g~~v~~trEP~~~~ige~iR~~ll~~~~~~~~~~e~lLfaadR~~h~~~~i 81 (208)
T COG0125 2 KGMFIVIEGIDGAGKTTQAELLKERLEERGIKVVLTREPGGTPIGEKIRELLLNGEEKLSPKAEALLFAADRAQHLEEVI 81 (208)
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCCCChHHHHHHHHHcCCccCCCHHHHHHHHHHHHHHHHHHHH
Confidence 46899999999999999999999988 32222 2466667776665 3333322111 112222
Q ss_pred HcccccCCceEEEcCcccH-------------HHHh---h-cC---CCcEEEEEecCHHHHHHHHhcccccccCCCcccc
Q 022951 133 EAGEAKGEAGFILDGFPRT-------------EILE---G-VT---DIDLVINLKLREEALLAKCLGRRICSECGGNYNV 192 (289)
Q Consensus 133 ~~~~~~~~~g~Ildg~p~~-------------~~l~---~-~~---~~d~vI~Ld~~~e~l~~Rl~~R~~~~~~g~~y~~ 192 (289)
.-.... +..||+|.|..+ +.+. . .. .||+++|||+|+++.++|+.+|....
T Consensus 82 ~pal~~-g~vVI~DRy~~Ss~AYQg~~~~~~~~~~~~l~~~~~~~~~PD~ti~Ldv~~e~al~R~~~r~~~~-------- 152 (208)
T COG0125 82 KPALKE-GKVVICDRYVDSSLAYQGGGRGLDLDWVLALNEFAPGGLKPDLTLYLDVPPEVALERIRKRGELR-------- 152 (208)
T ss_pred HHhhcC-CCEEEECCcccHHHHhhhhccCCCHHHHHHHHHhccCCCCCCEEEEEeCCHHHHHHHHHhcCCcc--------
Confidence 211111 457888886665 1111 1 22 59999999999999999999986320
Q ss_pred ccccccCCCCCCCCCCCCCCCCCccccCccccCCCcHHHHHHH-HHHHHHhchHHHHHHHHcCcEEEEeCCCCcccHHHH
Q 022951 193 ACIDIKGENGNPGMYMGPLLPPPHCASKLITRSDDKEEVVRER-LRIYNEKSRPVEEFYRRRGKLLEFDLPGGIPESWPK 271 (289)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~r~~d~~~~~~~r-l~~y~~~~~~l~~~y~~~~~l~~id~~~~~~ev~~~ 271 (289)
.|.+.....+.++ .+.|.+. .+.+ .+.+++||++.+++++..+
T Consensus 153 ------------------------------~r~E~~~~~f~~kvr~~Y~~l----a~~~--~~r~~vIda~~~~e~v~~~ 196 (208)
T COG0125 153 ------------------------------DRFEKEDDEFLEKVREGYLEL----AAKF--PERIIVIDASRPLEEVHEE 196 (208)
T ss_pred ------------------------------chhhhHHHHHHHHHHHHHHHH----HhhC--CCeEEEEECCCCHHHHHHH
Confidence 0111111112222 2233332 2221 2358999999999999999
Q ss_pred HHHHhccC
Q 022951 272 LLQALNLE 279 (289)
Q Consensus 272 i~~~l~~~ 279 (289)
|..+|...
T Consensus 197 i~~~l~~~ 204 (208)
T COG0125 197 ILKILKER 204 (208)
T ss_pred HHHHHHHh
Confidence 99988654
No 59
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=99.41 E-value=7.9e-12 Score=105.69 Aligned_cols=102 Identities=18% Similarity=0.267 Sum_probs=64.6
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHHHhCCCeeehHHHHHHHHH---------cCCccCHHHHHHHHHHHHHcccccCCceEE
Q 022951 74 HVQWVFLGCPGVGKGTYASRLSNLLGVPHIATGDLLDEIVS---------QGKLVSDEIIINLLSKRLEAGEAKGEAGFI 144 (289)
Q Consensus 74 ~~~Ivl~GppGsGKSTlak~La~~lg~~~i~~d~l~~~~l~---------~g~~v~~~~~~~ll~~~l~~~~~~~~~g~I 144 (289)
+..|+|+|++||||||+++.|++.+++.+++.|..+..... .|+....+...+++.. +.. ..++|
T Consensus 4 ~~~I~liG~~GaGKStl~~~La~~l~~~~vd~D~~i~~~~g~~i~~~~~~~g~~~fr~~e~~~l~~-l~~-----~~~~v 77 (172)
T PRK05057 4 KRNIFLVGPMGAGKSTIGRQLAQQLNMEFYDSDQEIEKRTGADIGWVFDVEGEEGFRDREEKVINE-LTE-----KQGIV 77 (172)
T ss_pred CCEEEEECCCCcCHHHHHHHHHHHcCCcEEECCchHHHHhCcCHhHHHHHhCHHHHHHHHHHHHHH-HHh-----CCCEE
Confidence 45799999999999999999999999999999887643221 1111111111222222 211 12344
Q ss_pred Ec-Cc--ccH-HHHhhcCCCcEEEEEecCHHHHHHHHhccc
Q 022951 145 LD-GF--PRT-EILEGVTDIDLVINLKLREEALLAKCLGRR 181 (289)
Q Consensus 145 ld-g~--p~~-~~l~~~~~~d~vI~Ld~~~e~l~~Rl~~R~ 181 (289)
+. |. +.. +..+.+...+.+|||++|.+.+.+|+..+.
T Consensus 78 i~~ggg~v~~~~~~~~l~~~~~vv~L~~~~e~~~~Ri~~~~ 118 (172)
T PRK05057 78 LATGGGSVKSRETRNRLSARGVVVYLETTIEKQLARTQRDK 118 (172)
T ss_pred EEcCCchhCCHHHHHHHHhCCEEEEEeCCHHHHHHHHhCCC
Confidence 43 32 211 333334346899999999999999997553
No 60
>PRK14730 coaE dephospho-CoA kinase; Provisional
Probab=99.40 E-value=7.4e-12 Score=108.01 Aligned_cols=148 Identities=18% Similarity=0.201 Sum_probs=92.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhCCCeeehHHHHHHHHHcCCc--------------------cCHHH-----------
Q 022951 75 VQWVFLGCPGVGKGTYASRLSNLLGVPHIATGDLLDEIVSQGKL--------------------VSDEI----------- 123 (289)
Q Consensus 75 ~~Ivl~GppGsGKSTlak~La~~lg~~~i~~d~l~~~~l~~g~~--------------------v~~~~----------- 123 (289)
++|+|+|++||||||+++.|++.+|+++++.|++.++.+..|.. +....
T Consensus 2 ~~i~itG~~gsGKst~~~~l~~~~g~~~i~~D~~~~~~~~~~~~~~~~l~~~fg~~i~~~~g~~idr~~L~~~vf~d~~~ 81 (195)
T PRK14730 2 RRIGLTGGIASGKSTVGNYLAQQKGIPILDADIYAREALAPGSPILKAILQRYGNKIIDPDGSELNRKALGEIIFNDPEE 81 (195)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhhCCeEeeCcHHHHHHHhcCchHHHHHHHHhCHHhcCCCCCeeCHHHHHHHHhCCHHH
Confidence 57999999999999999999999999999999998655443321 11110
Q ss_pred -----------HHHHHHHHHHcccccCCceEEEcCcccH--HHHhhcCCCcEEEEEecCHHHHHHHHhcccccccCCCcc
Q 022951 124 -----------IINLLSKRLEAGEAKGEAGFILDGFPRT--EILEGVTDIDLVINLKLREEALLAKCLGRRICSECGGNY 190 (289)
Q Consensus 124 -----------~~~ll~~~l~~~~~~~~~g~Ildg~p~~--~~l~~~~~~d~vI~Ld~~~e~l~~Rl~~R~~~~~~g~~y 190 (289)
+...+...+.... ...-+|+|. |.. ..+.. .+|.+|++++|.+...+|+..|+
T Consensus 82 ~~~l~~i~hP~i~~~~~~~~~~~~--~~~~vv~e~-pll~E~~~~~--~~D~ii~V~a~~e~r~~Rl~~R~--------- 147 (195)
T PRK14730 82 RRWLENLIHPYVRERFEEELAQLK--SNPIVVLVI-PLLFEAKLTD--LCSEIWVVDCSPEQQLQRLIKRD--------- 147 (195)
T ss_pred HHHHHHHHhHHHHHHHHHHHHhcC--CCCEEEEEe-HHhcCcchHh--CCCEEEEEECCHHHHHHHHHHcC---------
Confidence 0111111222111 123455553 111 12222 26999999999999999999884
Q ss_pred ccccccccCCCCCCCCCCCCCCCCCccccCccccCCCcHHHHHHHHHHHHHhchHHHHHHHHcCcEEEEeCCCCcccHHH
Q 022951 191 NVACIDIKGENGNPGMYMGPLLPPPHCASKLITRSDDKEEVVRERLRIYNEKSRPVEEFYRRRGKLLEFDLPGGIPESWP 270 (289)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~r~~d~~~~~~~rl~~y~~~~~~l~~~y~~~~~l~~id~~~~~~ev~~ 270 (289)
.-+.+.+..|++. ++ ++... ..... +.|+++++++++..
T Consensus 148 -----------------------------------g~s~e~~~~ri~~---Q~-~~~~k-~~~aD-~vI~N~g~~e~l~~ 186 (195)
T PRK14730 148 -----------------------------------GLTEEEAEARINA---QW-PLEEK-VKLAD-VVLDNSGDLEKLYQ 186 (195)
T ss_pred -----------------------------------CCCHHHHHHHHHh---CC-CHHHH-HhhCC-EEEECCCCHHHHHH
Confidence 1124556666654 12 11111 11222 46788999999999
Q ss_pred HHHHHhc
Q 022951 271 KLLQALN 277 (289)
Q Consensus 271 ~i~~~l~ 277 (289)
++.+++.
T Consensus 187 qv~~~l~ 193 (195)
T PRK14730 187 QVDQLLK 193 (195)
T ss_pred HHHHHHh
Confidence 9998764
No 61
>PRK14731 coaE dephospho-CoA kinase; Provisional
Probab=99.39 E-value=4e-12 Score=110.77 Aligned_cols=152 Identities=15% Similarity=0.196 Sum_probs=96.9
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhCCCeeehHHHHHHHHHcC----------------------C-ccCHHH------
Q 022951 73 KHVQWVFLGCPGVGKGTYASRLSNLLGVPHIATGDLLDEIVSQG----------------------K-LVSDEI------ 123 (289)
Q Consensus 73 ~~~~Ivl~GppGsGKSTlak~La~~lg~~~i~~d~l~~~~l~~g----------------------~-~v~~~~------ 123 (289)
.+++|.|+|++||||||+++.|.+ +|++.++.|.+.++++..+ . .+....
T Consensus 4 ~~~~igitG~igsGKSt~~~~l~~-~g~~v~d~D~i~~~~~~~~~~~~~~~~~~fg~~i~~~~~~~~~~idr~~l~~~vf 82 (208)
T PRK14731 4 LPFLVGVTGGIGSGKSTVCRFLAE-MGCELFEADRVAKELQVTDPEVIEGIKKLFGKDVYSKDASGKLLLDRKRIAQVVF 82 (208)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH-CCCeEEeccHHHHHHcCCcHHHHHHHHHHhCHHHhCCCCCCCcccCHHHHHHHHh
Confidence 468899999999999999999986 8999999987764332211 1 011111
Q ss_pred ----------------HHHHHHHHHHcccccCCceEEEcCcccH--HHHhhcCCCcEEEEEecCHHHHHHHHhccccccc
Q 022951 124 ----------------IINLLSKRLEAGEAKGEAGFILDGFPRT--EILEGVTDIDLVINLKLREEALLAKCLGRRICSE 185 (289)
Q Consensus 124 ----------------~~~ll~~~l~~~~~~~~~g~Ildg~p~~--~~l~~~~~~d~vI~Ld~~~e~l~~Rl~~R~~~~~ 185 (289)
+...+.+.+......+...+|+|+ |.. ..+. ..+|.+|++++|.+++.+|+..|.
T Consensus 83 ~~~~~~~~l~~i~hp~i~~~~~~~i~~~~~~~~~vvv~e~-pLL~e~~~~--~~~d~ii~V~a~~e~~~~Rl~~R~---- 155 (208)
T PRK14731 83 SDPEKLGALNRLIHPKVFAAFQRAVDRAARRGKRILVKEA-AILFESGGD--AGLDFIVVVAADTELRLERAVQRG---- 155 (208)
T ss_pred CCHHHHHHHHHHHCHHHHHHHHHHHHHHHhcCCCEEEEEe-eeeeecCch--hcCCeEEEEECCHHHHHHHHHHcC----
Confidence 111122222221111112445544 222 1111 136999999999999999999884
Q ss_pred CCCccccccccccCCCCCCCCCCCCCCCCCccccCccccCCCcHHHHHHHHHHHHHhchHHHHHHHHcCcEEEEeCCCCc
Q 022951 186 CGGNYNVACIDIKGENGNPGMYMGPLLPPPHCASKLITRSDDKEEVVRERLRIYNEKSRPVEEFYRRRGKLLEFDLPGGI 265 (289)
Q Consensus 186 ~g~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~r~~d~~~~~~~rl~~y~~~~~~l~~~y~~~~~l~~id~~~~~ 265 (289)
..+.+.+.+|++.+......+. .. -+.|++++++
T Consensus 156 ----------------------------------------~~s~e~~~~Ri~~q~~~~~~~~-----~a-d~vI~N~g~~ 189 (208)
T PRK14731 156 ----------------------------------------MGSREEIRRRIAAQWPQEKLIE-----RA-DYVIYNNGTL 189 (208)
T ss_pred ----------------------------------------CCCHHHHHHHHHHcCChHHHHH-----hC-CEEEECCCCH
Confidence 2246788888887655544431 12 3567889999
Q ss_pred ccHHHHHHHHhcc
Q 022951 266 PESWPKLLQALNL 278 (289)
Q Consensus 266 ~ev~~~i~~~l~~ 278 (289)
+++++++.+.+..
T Consensus 190 e~l~~~i~~~~~~ 202 (208)
T PRK14731 190 DELKAQTEQLYQV 202 (208)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999988743
No 62
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=99.39 E-value=4e-12 Score=103.24 Aligned_cols=107 Identities=21% Similarity=0.220 Sum_probs=69.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCeeehHHHHHHHHHcCCc---cCHHH---HHHHHHHHHHcccccCCceEEEcCc-
Q 022951 76 QWVFLGCPGVGKGTYASRLSNLLGVPHIATGDLLDEIVSQGKL---VSDEI---IINLLSKRLEAGEAKGEAGFILDGF- 148 (289)
Q Consensus 76 ~Ivl~GppGsGKSTlak~La~~lg~~~i~~d~l~~~~l~~g~~---v~~~~---~~~ll~~~l~~~~~~~~~g~Ildg~- 148 (289)
+|+++|+|||||||+++.|++.++..+++.|++...+...... ...+. ....+...+...... +..+|+|..
T Consensus 1 lii~~G~pgsGKSt~a~~l~~~~~~~~i~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-g~~~vvd~~~ 79 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAKRLGAVVISQDEIRRRLAGEDPPSPSDYIEAEERAYQILNAAIRKALRN-GNSVVVDNTN 79 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHSTEEEEEHHHHHHHHCCSSSGCCCCCHHHHHHHHHHHHHHHHHHHHT-T-EEEEESS-
T ss_pred CEEEECCCCCCHHHHHHHHHHHCCCEEEeHHHHHHHHcccccccchhHHHHHHHHHHHHHHHHHHHHHc-CCCceeccCc
Confidence 4889999999999999999999999999999888655432211 11221 222222222221111 347888862
Q ss_pred ccH-------HHHhhcCCCcEEEEEecCHHHHHHHHhccccc
Q 022951 149 PRT-------EILEGVTDIDLVINLKLREEALLAKCLGRRIC 183 (289)
Q Consensus 149 p~~-------~~l~~~~~~d~vI~Ld~~~e~l~~Rl~~R~~~ 183 (289)
... +.+.....+..+|+|+++.+++.+|+..|..+
T Consensus 80 ~~~~~r~~~~~~~~~~~~~~~~v~l~~~~~~~~~R~~~R~~~ 121 (143)
T PF13671_consen 80 LSREERARLRELARKHGYPVRVVYLDAPEETLRERLAQRNRE 121 (143)
T ss_dssp -SHHHHHHHHHHHHHCTEEEEEEEECHHHHHHHHHHHTTHCC
T ss_pred CCHHHHHHHHHHHHHcCCeEEEEEEECCHHHHHHHHHhcCCc
Confidence 222 22333333668999999999999999999643
No 63
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=99.39 E-value=1.2e-11 Score=105.01 Aligned_cols=156 Identities=20% Similarity=0.228 Sum_probs=100.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhCCCeeehHHHHH----HHHHcCCccCHH---HHHHHHHHHHHcccccCCceEEEcC
Q 022951 75 VQWVFLGCPGVGKGTYASRLSNLLGVPHIATGDLLD----EIVSQGKLVSDE---IIINLLSKRLEAGEAKGEAGFILDG 147 (289)
Q Consensus 75 ~~Ivl~GppGsGKSTlak~La~~lg~~~i~~d~l~~----~~l~~g~~v~~~---~~~~ll~~~l~~~~~~~~~g~Ildg 147 (289)
.+++|+|++||||||+++.|+..++..+++.+++.. ..+..|....++ .....+.+...........|+|+..
T Consensus 4 e~i~l~G~sGsGKSTl~~~la~~l~~~~i~gd~~~~~~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~iv~s 83 (176)
T PRK09825 4 ESYILMGVSGSGKSLIGSKIAALFSAKFIDGDDLHPAKNIDKMSQGIPLTDEDRLPWLERLNDASYSLYKKNETGFIVCS 83 (176)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhcCCEEECCcccCCHhHHHHHhcCCCCCcccchHHHHHHHHHHHHHHhcCCCEEEEEE
Confidence 468999999999999999999999999998877541 112233333221 1222222222111111135788866
Q ss_pred cccH---HHHhhcCCCcEEEEEecCHHHHHHHHhcccccccCCCccccccccccCCCCCCCCCCCCCCCCCccccCcccc
Q 022951 148 FPRT---EILEGVTDIDLVINLKLREEALLAKCLGRRICSECGGNYNVACIDIKGENGNPGMYMGPLLPPPHCASKLITR 224 (289)
Q Consensus 148 ~p~~---~~l~~~~~~d~vI~Ld~~~e~l~~Rl~~R~~~~~~g~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~r 224 (289)
+.+. +.+.....+-.+|||++|.+.+.+|+.+|..+
T Consensus 84 ~~~~~~R~~~r~~~~~~~~v~l~a~~~~l~~Rl~~R~~~----------------------------------------- 122 (176)
T PRK09825 84 SLKKQYRDILRKSSPNVHFLWLDGDYETILARMQRRAGH----------------------------------------- 122 (176)
T ss_pred ecCHHHHHHHHhhCCCEEEEEEeCCHHHHHHHHhcccCC-----------------------------------------
Confidence 6655 44444445668999999999999999999532
Q ss_pred CCCcHHHHHHHHHHHHHhchHHHHHHHHcCcEEEEeCCCCcccHHHHHHHHhccC
Q 022951 225 SDDKEEVVRERLRIYNEKSRPVEEFYRRRGKLLEFDLPGGIPESWPKLLQALNLE 279 (289)
Q Consensus 225 ~~d~~~~~~~rl~~y~~~~~~l~~~y~~~~~l~~id~~~~~~ev~~~i~~~l~~~ 279 (289)
.-+.+.+..+++.+.... .....++.||++.+++++..++...+...
T Consensus 123 -~~~~~vl~~Q~~~~e~~~-------~~e~~~~~~d~~~~~~~~~~~~~~~~~~~ 169 (176)
T PRK09825 123 -FMPPDLLQSQFDALERPC-------ADEHDIARIDVNHDIENVTEQCRQAVQAF 169 (176)
T ss_pred -CCCHHHHHHHHHHcCCCC-------CCcCCeEEEECCCCHHHHHHHHHHHHHHH
Confidence 113566666665544221 11234999999999888888888877544
No 64
>PLN02199 shikimate kinase
Probab=99.38 E-value=2e-11 Score=110.66 Aligned_cols=103 Identities=17% Similarity=0.192 Sum_probs=67.5
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHHHhCCCeeehHHHHHHHHHcCCccC-------HHHHHHHHHHHHHcccccCCceEEEc
Q 022951 74 HVQWVFLGCPGVGKGTYASRLSNLLGVPHIATGDLLDEIVSQGKLVS-------DEIIINLLSKRLEAGEAKGEAGFILD 146 (289)
Q Consensus 74 ~~~Ivl~GppGsGKSTlak~La~~lg~~~i~~d~l~~~~l~~g~~v~-------~~~~~~ll~~~l~~~~~~~~~g~Ild 146 (289)
...|+|+|.+||||||+++.||+.+|++++++|.++++.+. |..+. .+.+.+.-.+.+...... ...||-.
T Consensus 102 ~~~I~LIG~~GSGKSTVgr~LA~~Lg~~fIDtD~lIe~~~~-G~sI~eIf~~~GE~~FR~~E~e~L~~L~~~-~~~VISt 179 (303)
T PLN02199 102 GRSMYLVGMMGSGKTTVGKLMSKVLGYTFFDCDTLIEQAMN-GTSVAEIFVHHGENFFRGKETDALKKLSSR-YQVVVST 179 (303)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCCEEehHHHHHHHhc-CCCHHHHHHHhCHHHHHHHHHHHHHHHHhc-CCEEEEC
Confidence 45799999999999999999999999999999999966532 32221 122222222223222211 2234433
Q ss_pred C--cccH-HHHhhcCCCcEEEEEecCHHHHHHHHhc
Q 022951 147 G--FPRT-EILEGVTDIDLVINLKLREEALLAKCLG 179 (289)
Q Consensus 147 g--~p~~-~~l~~~~~~d~vI~Ld~~~e~l~~Rl~~ 179 (289)
| .+.. +.+..+. ..++|||++|.+.+.+|+..
T Consensus 180 GGG~V~~~~n~~~L~-~G~vV~Ldas~E~l~~RL~~ 214 (303)
T PLN02199 180 GGGAVIRPINWKYMH-KGISIWLDVPLEALAHRIAA 214 (303)
T ss_pred CCcccCCHHHHHHHh-CCeEEEEECCHHHHHHHHhh
Confidence 3 2222 4444443 47899999999999999975
No 65
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=99.37 E-value=8.2e-12 Score=101.38 Aligned_cols=96 Identities=27% Similarity=0.441 Sum_probs=76.0
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhCCCeeehHHHHHHH--HH------cCCccCHHHHHHHHHHHHHcccccCCceEE
Q 022951 73 KHVQWVFLGCPGVGKGTYASRLSNLLGVPHIATGDLLDEI--VS------QGKLVSDEIIINLLSKRLEAGEAKGEAGFI 144 (289)
Q Consensus 73 ~~~~Ivl~GppGsGKSTlak~La~~lg~~~i~~d~l~~~~--l~------~g~~v~~~~~~~ll~~~l~~~~~~~~~g~I 144 (289)
..+.|+|+|-||+||||+|++||+.+|+.||.+++++++- .. .-..+.++.+...|+..+.. .|.|
T Consensus 6 ~~PNILvtGTPG~GKstl~~~lae~~~~~~i~isd~vkEn~l~~gyDE~y~c~i~DEdkv~D~Le~~m~~------Gg~I 79 (176)
T KOG3347|consen 6 ERPNILVTGTPGTGKSTLAERLAEKTGLEYIEISDLVKENNLYEGYDEEYKCHILDEDKVLDELEPLMIE------GGNI 79 (176)
T ss_pred cCCCEEEeCCCCCCchhHHHHHHHHhCCceEehhhHHhhhcchhcccccccCccccHHHHHHHHHHHHhc------CCcE
Confidence 4578999999999999999999999999999999999431 10 11245666777777777765 3788
Q ss_pred EcC-----cccHHHHhhcCCCcEEEEEecCHHHHHHHHhccc
Q 022951 145 LDG-----FPRTEILEGVTDIDLVINLKLREEALLAKCLGRR 181 (289)
Q Consensus 145 ldg-----~p~~~~l~~~~~~d~vI~Ld~~~e~l~~Rl~~R~ 181 (289)
+|- ||. ++ +|+|+.|.+|.+++.+||..|.
T Consensus 80 VDyHgCd~Fpe-----rw--fdlVvVLr~~~s~LY~RL~sRg 114 (176)
T KOG3347|consen 80 VDYHGCDFFPE-----RW--FDLVVVLRTPNSVLYDRLKSRG 114 (176)
T ss_pred EeecccCccch-----hh--eeEEEEEecCchHHHHHHHHcC
Confidence 884 333 22 6999999999999999999885
No 66
>PRK07261 topology modulation protein; Provisional
Probab=99.36 E-value=2e-12 Score=109.28 Aligned_cols=101 Identities=23% Similarity=0.258 Sum_probs=73.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhCCCeeehHHHHHHHHHcCCccCHHHHHHHHHHHHHcccccCCceEEEcCcccH-HH
Q 022951 75 VQWVFLGCPGVGKGTYASRLSNLLGVPHIATGDLLDEIVSQGKLVSDEIIINLLSKRLEAGEAKGEAGFILDGFPRT-EI 153 (289)
Q Consensus 75 ~~Ivl~GppGsGKSTlak~La~~lg~~~i~~d~l~~~~l~~g~~v~~~~~~~ll~~~l~~~~~~~~~g~Ildg~p~~-~~ 153 (289)
++|+|+|+|||||||+|+.|++.+++++++.|.+... ......+.+.+...+...+.. ..||+||.... ..
T Consensus 1 ~ri~i~G~~GsGKSTla~~l~~~~~~~~i~~D~~~~~--~~~~~~~~~~~~~~~~~~~~~------~~wIidg~~~~~~~ 72 (171)
T PRK07261 1 MKIAIIGYSGSGKSTLARKLSQHYNCPVLHLDTLHFQ--PNWQERDDDDMIADISNFLLK------HDWIIDGNYSWCLY 72 (171)
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHhCCCeEecCCEEec--cccccCCHHHHHHHHHHHHhC------CCEEEcCcchhhhH
Confidence 4799999999999999999999999999999776521 112234455555655555432 35999995544 11
Q ss_pred HhhcCCCcEEEEEecCHHHHHHHHhccccc
Q 022951 154 LEGVTDIDLVINLKLREEALLAKCLGRRIC 183 (289)
Q Consensus 154 l~~~~~~d~vI~Ld~~~e~l~~Rl~~R~~~ 183 (289)
-..+...|.+||||+|...++.|+.+|...
T Consensus 73 ~~~l~~ad~vI~Ld~p~~~~~~R~lkR~~~ 102 (171)
T PRK07261 73 EERMQEADQIIFLNFSRFNCLYRAFKRYLK 102 (171)
T ss_pred HHHHHHCCEEEEEcCCHHHHHHHHHHHHHH
Confidence 222334699999999999999999988643
No 67
>PRK14734 coaE dephospho-CoA kinase; Provisional
Probab=99.35 E-value=1.8e-11 Score=105.97 Aligned_cols=150 Identities=20% Similarity=0.230 Sum_probs=92.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhCCCeeehHHHHHHHHHcCCccCHH--------------------------------
Q 022951 75 VQWVFLGCPGVGKGTYASRLSNLLGVPHIATGDLLDEIVSQGKLVSDE-------------------------------- 122 (289)
Q Consensus 75 ~~Ivl~GppGsGKSTlak~La~~lg~~~i~~d~l~~~~l~~g~~v~~~-------------------------------- 122 (289)
++|.|+|++||||||+++.|+. +|+++++.|++.++.+..+.....+
T Consensus 2 ~~igitG~igsGKst~~~~l~~-~g~~vid~D~i~~~~~~~~~~~~~~l~~~fg~~~~~~~g~idR~~L~~~vF~~~~~~ 80 (200)
T PRK14734 2 LRIGLTGGIGSGKSTVADLLSS-EGFLIVDADQVARDIVEPGQPALAELAEAFGDDILNPDGTLDRAGLAAKAFASPEQT 80 (200)
T ss_pred eEEEEECCCCCCHHHHHHHHHH-CCCeEEeCcHHHHHHHhcCCHHHHHHHHHhCccccCCCChhhHHHHHHHHhCCHHHH
Confidence 4789999999999999999987 8999999998875554443211000
Q ss_pred ---------HHHHHHHHHHHcccccCCceEEEcCcccH--HHHhhcCCCcEEEEEecCHHHHHHHHhcccccccCCCccc
Q 022951 123 ---------IIINLLSKRLEAGEAKGEAGFILDGFPRT--EILEGVTDIDLVINLKLREEALLAKCLGRRICSECGGNYN 191 (289)
Q Consensus 123 ---------~~~~ll~~~l~~~~~~~~~g~Ildg~p~~--~~l~~~~~~d~vI~Ld~~~e~l~~Rl~~R~~~~~~g~~y~ 191 (289)
.+...+.+.+......+...++++. |.. ..+.. .+|.+||+++|.++..+|+..|+
T Consensus 81 ~~le~i~hP~v~~~~~~~~~~~~~~~~~~vv~e~-plL~e~g~~~--~~D~vi~V~a~~e~ri~Rl~~R~---------- 147 (200)
T PRK14734 81 ALLNAITHPRIAEETARRFNEARAQGAKVAVYDM-PLLVEKGLDR--KMDLVVVVDVDVEERVRRLVEKR---------- 147 (200)
T ss_pred HHHHHhhCHHHHHHHHHHHHHHHhcCCCEEEEEe-eceeEcCccc--cCCeEEEEECCHHHHHHHHHHcC----------
Confidence 0111111111111101012344442 111 11111 36999999999999999998884
Q ss_pred cccccccCCCCCCCCCCCCCCCCCccccCccccCCCcHHHHHHHHHHHHHhchHHHHHHHHcCcEEEEeCCCCcccHHHH
Q 022951 192 VACIDIKGENGNPGMYMGPLLPPPHCASKLITRSDDKEEVVRERLRIYNEKSRPVEEFYRRRGKLLEFDLPGGIPESWPK 271 (289)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~r~~d~~~~~~~rl~~y~~~~~~l~~~y~~~~~l~~id~~~~~~ev~~~ 271 (289)
.-+.+.+..|++.+..... +.+.. .+.|+++++++++.++
T Consensus 148 ----------------------------------g~s~e~~~~ri~~Q~~~~~-----k~~~a-d~vI~N~g~~e~l~~~ 187 (200)
T PRK14734 148 ----------------------------------GLDEDDARRRIAAQIPDDV-----RLKAA-DIVVDNNGTREQLLAQ 187 (200)
T ss_pred ----------------------------------CCCHHHHHHHHHhcCCHHH-----HHHhC-CEEEECcCCHHHHHHH
Confidence 1124567777765444311 11222 3578999999999999
Q ss_pred HHHHhcc
Q 022951 272 LLQALNL 278 (289)
Q Consensus 272 i~~~l~~ 278 (289)
+..+++.
T Consensus 188 v~~~~~~ 194 (200)
T PRK14734 188 VDGLIAE 194 (200)
T ss_pred HHHHHHH
Confidence 9988743
No 68
>PRK14738 gmk guanylate kinase; Provisional
Probab=99.34 E-value=7.5e-12 Score=108.85 Aligned_cols=156 Identities=15% Similarity=0.154 Sum_probs=94.5
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHHHHh-CCC---------------------eeehHHHHHHHHHcCCccCHHH----H
Q 022951 71 EGKHVQWVFLGCPGVGKGTYASRLSNLL-GVP---------------------HIATGDLLDEIVSQGKLVSDEI----I 124 (289)
Q Consensus 71 ~~~~~~Ivl~GppGsGKSTlak~La~~l-g~~---------------------~i~~d~l~~~~l~~g~~v~~~~----~ 124 (289)
+.++.+|+|+||+||||||+++.|.+.. .+. +++..++ ...+..|..+.... .
T Consensus 10 ~~~~~~ivi~GpsG~GK~tl~~~L~~~~~~~~~~~~~ttr~~r~~e~~g~~y~fv~~~~f-~~~~~~~~~le~~~~~g~~ 88 (206)
T PRK14738 10 PAKPLLVVISGPSGVGKDAVLARMRERKLPFHFVVTATTRPKRPGEIDGVDYHFVTPEEF-REMISQNELLEWAEVYGNY 88 (206)
T ss_pred CCCCeEEEEECcCCCCHHHHHHHHHhcCCcccccccccCCCCCCCCCCCCeeeeCCHHHH-HHHHHcCCcEEEEEEcCce
Confidence 3467889999999999999999998642 110 1111111 22233333221100 0
Q ss_pred ----HHHHHHHHHcccccCCceEEEcCcccH-HHHhhcCCCcEEEEEecC--HHHHHHHHhcccccccCCCccccccccc
Q 022951 125 ----INLLSKRLEAGEAKGEAGFILDGFPRT-EILEGVTDIDLVINLKLR--EEALLAKCLGRRICSECGGNYNVACIDI 197 (289)
Q Consensus 125 ----~~ll~~~l~~~~~~~~~g~Ildg~p~~-~~l~~~~~~d~vI~Ld~~--~e~l~~Rl~~R~~~~~~g~~y~~~~~~~ 197 (289)
...+...+.. +..+|+|.-... ..+... .+|.++++++| .+++.+|+.+|.
T Consensus 89 YGt~~~~i~~~~~~-----g~~vi~~~~~~g~~~l~~~-~pd~~~if~~pps~e~l~~Rl~~R~---------------- 146 (206)
T PRK14738 89 YGVPKAPVRQALAS-----GRDVIVKVDVQGAASIKRL-VPEAVFIFLAPPSMDELTRRLELRR---------------- 146 (206)
T ss_pred ecCCHHHHHHHHHc-----CCcEEEEcCHHHHHHHHHh-CCCeEEEEEeCCCHHHHHHHHHHcC----------------
Confidence 0122222222 335677653332 344443 36776666654 568899998874
Q ss_pred cCCCCCCCCCCCCCCCCCccccCccccCCCcHHHHHHHHHHHHHhchHHHHHHHHcCcEEEEeCCCCcccHHHHHHHHhc
Q 022951 198 KGENGNPGMYMGPLLPPPHCASKLITRSDDKEEVVRERLRIYNEKSRPVEEFYRRRGKLLEFDLPGGIPESWPKLLQALN 277 (289)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~L~~r~~d~~~~~~~rl~~y~~~~~~l~~~y~~~~~l~~id~~~~~~ev~~~i~~~l~ 277 (289)
++..+.+.+|+..+....... ....++.||+++++++++.+|.++|.
T Consensus 147 ----------------------------~~~~~~~~~Rl~~~~~e~~~~-----~~~~~~iId~~~~~e~v~~~i~~~l~ 193 (206)
T PRK14738 147 ----------------------------TESPEELERRLATAPLELEQL-----PEFDYVVVNPEDRLDEAVAQIMAIIS 193 (206)
T ss_pred ----------------------------CCCHHHHHHHHHHHHHHHhcc-----cCCCEEEECCCCCHHHHHHHHHHHHH
Confidence 334568889998877654322 12358899999999999999999998
Q ss_pred cCCcc
Q 022951 278 LEDPE 282 (289)
Q Consensus 278 ~~~~~ 282 (289)
.+..+
T Consensus 194 ~~~~~ 198 (206)
T PRK14738 194 AEKSR 198 (206)
T ss_pred HHhcc
Confidence 77543
No 69
>PF02223 Thymidylate_kin: Thymidylate kinase; InterPro: IPR018094 Thymidylate kinase (2.7.4.9 from EC; dTMP kinase) catalyzes the phosphorylation of thymidine 5'-monophosphate (dTMP) to form thymidine 5'-diphosphate (dTDP) in the presence of ATP and magnesium: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate Thymidylate kinase is an ubiquitous enzyme of about 25 Kd and is important in the dTTP synthesis pathway for DNA synthesis. The function of dTMP kinase in eukaryotes comes from the study of a cell cycle mutant, cdc8, in Saccharomyces cerevisiae. Structural and functional analyses suggest that the cDNA codes for authentic human dTMP kinase. The mRNA levels and enzyme activities corresponded to cell cycle progression and cell growth stages[]. ; GO: 0004798 thymidylate kinase activity, 0005524 ATP binding, 0006233 dTDP biosynthetic process; PDB: 2PLR_B 1NMX_A 1NN0_A 2XX3_A 1NN3_A 1E9F_A 1E2Q_A 1E2D_A 1E9A_A 1E99_A ....
Probab=99.34 E-value=2.5e-11 Score=103.48 Aligned_cols=102 Identities=24% Similarity=0.272 Sum_probs=62.9
Q ss_pred EEcCCCCCHHHHHHHHHHHhCCCee-----------ehHHHHHHHHHcCCccCHHHHHHH--------HHHHHHcccccC
Q 022951 79 FLGCPGVGKGTYASRLSNLLGVPHI-----------ATGDLLDEIVSQGKLVSDEIIINL--------LSKRLEAGEAKG 139 (289)
Q Consensus 79 l~GppGsGKSTlak~La~~lg~~~i-----------~~d~l~~~~l~~g~~v~~~~~~~l--------l~~~l~~~~~~~ 139 (289)
|.|+.||||||+++.|++++....+ ..++.+++++............-+ +...+... ...
T Consensus 1 ~EGiDGsGKtT~~~~L~~~l~~~~~~~~~~~~~~~~~~g~~ir~~l~~~~~~~~~~~~~l~~a~r~~~~~~~I~~~-l~~ 79 (186)
T PF02223_consen 1 FEGIDGSGKTTQIRLLAEALKEKGYKVIITFPPGSTPIGELIRELLRSESELSPEAEALLFAADRAWHLARVIRPA-LKR 79 (186)
T ss_dssp EEESTTSSHHHHHHHHHHHHHHTTEEEEEEESSTSSHHHHHHHHHHHTSSTCGHHHHHHHHHHHHHHHHHHTHHHH-HHT
T ss_pred CCCCCCCCHHHHHHHHHHHHHHcCCcccccCCCCCChHHHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHHHHH-HcC
Confidence 6899999999999999999832221 245666777773333332221111 11111111 111
Q ss_pred CceEEEcCcccH-----------------HHHhhcC--CCcEEEEEecCHHHHHHHHhccc
Q 022951 140 EAGFILDGFPRT-----------------EILEGVT--DIDLVINLKLREEALLAKCLGRR 181 (289)
Q Consensus 140 ~~g~Ildg~p~~-----------------~~l~~~~--~~d~vI~Ld~~~e~l~~Rl~~R~ 181 (289)
+..+|+|.|..+ +....+. .||++||||+++++.++|+..|.
T Consensus 80 g~~VI~DRy~~S~lay~~~~~~~~~~~~~~~~~~~~~~~PDl~~~Ldv~pe~~~~R~~~r~ 140 (186)
T PF02223_consen 80 GKIVICDRYIYSTLAYQGAKGELDIDWIWRLNKDIFLPKPDLTFFLDVDPEEALKRIAKRG 140 (186)
T ss_dssp TSEEEEESEHHHHHHHHTTTTSSTHHHHHHHHHHHHTTE-SEEEEEECCHHHHHHHHHHTS
T ss_pred CCEEEEechhHHHHHhCccccCCcchhhhHHHHHhcCCCCCEEEEEecCHHHHHHHHHcCC
Confidence 468899986544 1111222 69999999999999999999986
No 70
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=99.33 E-value=4.7e-11 Score=101.07 Aligned_cols=149 Identities=19% Similarity=0.181 Sum_probs=87.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhCCC---eee-h-----------------HHHHHHHHHcCCccC--HH-----HHHH
Q 022951 75 VQWVFLGCPGVGKGTYASRLSNLLGVP---HIA-T-----------------GDLLDEIVSQGKLVS--DE-----IIIN 126 (289)
Q Consensus 75 ~~Ivl~GppGsGKSTlak~La~~lg~~---~i~-~-----------------d~l~~~~l~~g~~v~--~~-----~~~~ 126 (289)
.+|+|+|||||||||+++.|+..++.. .+. . .+.+......+.... .. -...
T Consensus 2 ~~~~i~G~sGsGKttl~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 81 (179)
T TIGR02322 2 RLIYVVGPSGAGKDTLLDYARARLAGDPRVHFVRRVITRPASAGGENHIALSTEEFDHREDGGAFALSWQAHGLSYGIPA 81 (179)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCcCCcEEEeeEEcccCCCCCCccccccCHHHHHHHHHCCCEEEEEeecCccccChH
Confidence 368999999999999999999987532 111 0 001111112221100 00 0000
Q ss_pred HHHHHHHcccccCCceEEEcCcccH-HHHhhcCCCcEEEEEecCHHHHHHHHhcccccccCCCccccccccccCCCCCCC
Q 022951 127 LLSKRLEAGEAKGEAGFILDGFPRT-EILEGVTDIDLVINLKLREEALLAKCLGRRICSECGGNYNVACIDIKGENGNPG 205 (289)
Q Consensus 127 ll~~~l~~~~~~~~~g~Ildg~p~~-~~l~~~~~~d~vI~Ld~~~e~l~~Rl~~R~~~~~~g~~y~~~~~~~~~~~~~~~ 205 (289)
.+...+.. +..+|++|.... ..+........+|||+++.+.+.+|+..|..
T Consensus 82 ~i~~~~~~-----g~~vv~~g~~~~~~~~~~~~~~~~~i~l~~~~~~~~~Rl~~R~~----------------------- 133 (179)
T TIGR02322 82 EIDQWLEA-----GDVVVVNGSRAVLPEARQRYPNLLVVNITASPDVLAQRLAARGR----------------------- 133 (179)
T ss_pred HHHHHHhc-----CCEEEEECCHHHHHHHHHHCCCcEEEEEECCHHHHHHHHHHcCC-----------------------
Confidence 12222221 457888885332 2222222345799999999999999998741
Q ss_pred CCCCCCCCCCccccCccccCCCcHHHHHHHHHHHHHhchHHHHHHHHcCcEEEEeCCCCcccHHHHHHHHhccC
Q 022951 206 MYMGPLLPPPHCASKLITRSDDKEEVVRERLRIYNEKSRPVEEFYRRRGKLLEFDLPGGIPESWPKLLQALNLE 279 (289)
Q Consensus 206 ~~~~~~~~~~~~~~~L~~r~~d~~~~~~~rl~~y~~~~~~l~~~y~~~~~l~~id~~~~~~ev~~~i~~~l~~~ 279 (289)
...+.+.+|+..+..... ....++.+++++++++++.+|.+.|..+
T Consensus 134 ---------------------~~~~~~~~rl~~~~~~~~-------~~~~~~vi~~~~~~ee~~~~i~~~l~~~ 179 (179)
T TIGR02322 134 ---------------------ESREEIEERLARSARFAA-------APADVTTIDNSGSLEVAGETLLRLLRKE 179 (179)
T ss_pred ---------------------CCHHHHHHHHHHHhhccc-------ccCCEEEEeCCCCHHHHHHHHHHHHccC
Confidence 113566677654332210 2234677888899999999999998653
No 71
>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed
Probab=99.32 E-value=3.9e-11 Score=110.61 Aligned_cols=106 Identities=17% Similarity=0.204 Sum_probs=66.7
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHHHhCCCeeehHHHHHHHH---------HcCCccCHHHHHHHHHHHHHcccccCCce
Q 022951 72 GKHVQWVFLGCPGVGKGTYASRLSNLLGVPHIATGDLLDEIV---------SQGKLVSDEIIINLLSKRLEAGEAKGEAG 142 (289)
Q Consensus 72 ~~~~~Ivl~GppGsGKSTlak~La~~lg~~~i~~d~l~~~~l---------~~g~~v~~~~~~~ll~~~l~~~~~~~~~g 142 (289)
.+...|+|+|+|||||||+++.|++.+|+++++.|..+.+.. ..|+....+...+.+...+... +..
T Consensus 131 ~~~~~I~l~G~~GsGKStvg~~La~~Lg~~~id~D~~i~~~~G~~i~ei~~~~G~~~fr~~e~~~l~~ll~~~----~~~ 206 (309)
T PRK08154 131 ARRRRIALIGLRGAGKSTLGRMLAARLGVPFVELNREIEREAGLSVSEIFALYGQEGYRRLERRALERLIAEH----EEM 206 (309)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHHcCCCEEeHHHHHHHHhCCCHHHHHHHHCHHHHHHHHHHHHHHHHhhC----CCE
Confidence 345789999999999999999999999999999988774321 0121111122222233322211 123
Q ss_pred EEEcCcc--cH-HHHhhcCCCcEEEEEecCHHHHHHHHhccc
Q 022951 143 FILDGFP--RT-EILEGVTDIDLVINLKLREEALLAKCLGRR 181 (289)
Q Consensus 143 ~Ildg~p--~~-~~l~~~~~~d~vI~Ld~~~e~l~~Rl~~R~ 181 (289)
+|-.|.. .. ..+..+....++|||++|.+.+.+|+.+|.
T Consensus 207 VI~~Ggg~v~~~~~~~~l~~~~~~V~L~a~~e~~~~Rl~~r~ 248 (309)
T PRK08154 207 VLATGGGIVSEPATFDLLLSHCYTVWLKASPEEHMARVRAQG 248 (309)
T ss_pred EEECCCchhCCHHHHHHHHhCCEEEEEECCHHHHHHHHhcCC
Confidence 3334321 11 223333345689999999999999998774
No 72
>smart00072 GuKc Guanylate kinase homologues. Active enzymes catalyze ATP-dependent phosphorylation of GMP to GDP. Structure resembles that of adenylate kinase. So-called membrane-associated guanylate kinase homologues (MAGUKs) do not possess guanylate kinase activities; instead at least some possess protein-binding functions.
Probab=99.32 E-value=2.3e-11 Score=103.87 Aligned_cols=150 Identities=19% Similarity=0.237 Sum_probs=96.6
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHHHhC--CCee--------------------ehHHHHHHHHHcCCccCHHH--------
Q 022951 74 HVQWVFLGCPGVGKGTYASRLSNLLG--VPHI--------------------ATGDLLDEIVSQGKLVSDEI-------- 123 (289)
Q Consensus 74 ~~~Ivl~GppGsGKSTlak~La~~lg--~~~i--------------------~~d~l~~~~l~~g~~v~~~~-------- 123 (289)
++.|+|+||+||||+|+++.|.+.+. +.++ -+.+-+...++.|+.++...
T Consensus 2 ~r~ivl~Gpsg~GK~tl~~~L~~~~~~~~~~~~~~TtR~~r~~e~~g~dy~fvs~~ef~~~i~~g~fve~~~~~g~~YGt 81 (184)
T smart00072 2 RRPIVLSGPSGVGKGTLLAELIQEIPDAFERVVSHTTRPPRPGEVNGVDYHFVSREEFEDDIKSGLFLEWGEYSGNYYGT 81 (184)
T ss_pred CcEEEEECCCCCCHHHHHHHHHhcCCcceEeeeeecCCCCCCCCcCCceEEECCHHHHHHHHHcCCeEEEEEEcCcCccc
Confidence 35789999999999999999999852 2111 11223345555565543321
Q ss_pred HHHHHHHHHHcccccCCceEEEcCcccH-HHHhhcCCCcEEEEEe-cCHHHHHHHHhcccccccCCCccccccccccCCC
Q 022951 124 IINLLSKRLEAGEAKGEAGFILDGFPRT-EILEGVTDIDLVINLK-LREEALLAKCLGRRICSECGGNYNVACIDIKGEN 201 (289)
Q Consensus 124 ~~~ll~~~l~~~~~~~~~g~Ildg~p~~-~~l~~~~~~d~vI~Ld-~~~e~l~~Rl~~R~~~~~~g~~y~~~~~~~~~~~ 201 (289)
....+...+.. ++.+|+|+.+.. ..+......-++|||. .+.+.+.+|+.+|.
T Consensus 82 ~~~~i~~~~~~-----~~~~ild~~~~~~~~l~~~~~~~~vIfi~~~s~~~l~~rl~~R~-------------------- 136 (184)
T smart00072 82 SKETIRQVAEQ-----GKHCLLDIDPQGVKQLRKAQLYPIVIFIAPPSSEELERRLRGRG-------------------- 136 (184)
T ss_pred CHHHHHHHHHc-----CCeEEEEECHHHHHHHHHhCCCcEEEEEeCcCHHHHHHHHHhcC--------------------
Confidence 12233333332 458999988776 5555544344799998 66677999998774
Q ss_pred CCCCCCCCCCCCCCccccCccccCCCcHHHHHHHHHHHHHhchHHHHHHHHcCcEEEEeCCCCcccHHHHHHHHhccC
Q 022951 202 GNPGMYMGPLLPPPHCASKLITRSDDKEEVVRERLRIYNEKSRPVEEFYRRRGKLLEFDLPGGIPESWPKLLQALNLE 279 (289)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~L~~r~~d~~~~~~~rl~~y~~~~~~l~~~y~~~~~l~~id~~~~~~ev~~~i~~~l~~~ 279 (289)
+++.+.+++|+........ .| .....+ |.++ ++++.+++|.++|+.+
T Consensus 137 ------------------------~~~~~~i~~rl~~a~~~~~----~~-~~fd~~-I~n~-~l~~~~~~l~~~i~~~ 183 (184)
T smart00072 137 ------------------------TETAERIQKRLAAAQKEAQ----EY-HLFDYV-IVND-DLEDAYEELKEILEAE 183 (184)
T ss_pred ------------------------CCCHHHHHHHHHHHHHHHh----hh-ccCCEE-EECc-CHHHHHHHHHHHHHhc
Confidence 4567889999988665532 22 122233 4433 7999999999999765
No 73
>cd02030 NDUO42 NADH:Ubiquinone oxioreductase, 42 kDa (NDUO42) is a family of proteins that are highly similar to deoxyribonucleoside kinases (dNK). Members of this family have been identified as one of the subunits of NADH:Ubiquinone oxioreductase (complex I), a multi-protein complex located in the inner mitochondrial membrane. The main function of the complex is to transport electrons from NADH to ubiquinone, which is accompanied by the translocation of protons from the mitochondrial matrix to the inter membrane space.
Probab=99.32 E-value=6.5e-11 Score=103.89 Aligned_cols=106 Identities=21% Similarity=0.196 Sum_probs=62.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCeeehH----------------H------HHHHHHHcCC---ccCHHHHHHHHHH
Q 022951 76 QWVFLGCPGVGKGTYASRLSNLLGVPHIATG----------------D------LLDEIVSQGK---LVSDEIIINLLSK 130 (289)
Q Consensus 76 ~Ivl~GppGsGKSTlak~La~~lg~~~i~~d----------------~------l~~~~l~~g~---~v~~~~~~~ll~~ 130 (289)
+|+|.|+.||||||+++.|++.++..++... + +++.+..... .........++..
T Consensus 1 ~I~iEG~~GsGKSTl~~~L~~~l~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~q~~~~~~ 80 (219)
T cd02030 1 VITVDGNIASGKGKLAKELAEKLGMKYFPEAGIHYLDSTTGDGKPLDPAFNGNCSLEKFYDDPKSNDGNSYRLQSWMYSS 80 (219)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHhCCCeeeccchhccccccccccccccccCCCcCHHHHhcCCcccCCcchHHHHHHHHH
Confidence 4899999999999999999999986544221 0 1233333222 1111111111111
Q ss_pred HHHc------ccccCCceEEEcCcccH-------------------H---H-----HhhcCCCcEEEEEecCHHHHHHHH
Q 022951 131 RLEA------GEAKGEAGFILDGFPRT-------------------E---I-----LEGVTDIDLVINLKLREEALLAKC 177 (289)
Q Consensus 131 ~l~~------~~~~~~~g~Ildg~p~~-------------------~---~-----l~~~~~~d~vI~Ld~~~e~l~~Rl 177 (289)
+... .....+..+|+|++..+ + . +..+..||++|||++|++.+++|+
T Consensus 81 R~~~~~~~i~~~l~~g~~VI~DR~~~S~~~f~~~~~~~g~~~~~~~~~~~~l~~~~~~~~~~Pd~~i~l~~~~~~~~~Ri 160 (219)
T cd02030 81 RLLQYSDALEHLLSTGQGVVLERSPFSDFVFLEAMYKQGYIRKQCVDHYNEVKGNTIPELLPPHLVIYLDVPVPEVQKRI 160 (219)
T ss_pred HHHHHHHHHHHHhhcCCCEEEecchhHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhcccCCCCEEEEEeCCHHHHHHHH
Confidence 1111 00111457899986433 0 0 111235899999999999999999
Q ss_pred hccc
Q 022951 178 LGRR 181 (289)
Q Consensus 178 ~~R~ 181 (289)
.+|.
T Consensus 161 ~~R~ 164 (219)
T cd02030 161 KKRG 164 (219)
T ss_pred HHcC
Confidence 9885
No 74
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=99.32 E-value=2.2e-11 Score=108.82 Aligned_cols=151 Identities=19% Similarity=0.248 Sum_probs=88.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHhC-----CCeeehHHHHHHH---HHcCCccCHHHHHHHHHHHHHcccccCCceEEEcC
Q 022951 76 QWVFLGCPGVGKGTYASRLSNLLG-----VPHIATGDLLDEI---VSQGKLVSDEIIINLLSKRLEAGEAKGEAGFILDG 147 (289)
Q Consensus 76 ~Ivl~GppGsGKSTlak~La~~lg-----~~~i~~d~l~~~~---l~~g~~v~~~~~~~ll~~~l~~~~~~~~~g~Ildg 147 (289)
+|+|+|+|||||||+|+.|++.++ +.+++.|.+...+ ...++....+.....+...+.. +..+|+|+
T Consensus 1 LIvl~G~pGSGKST~a~~La~~l~~~~~~v~~i~~D~lr~~~~~~~~~~e~~~~~~~~~~i~~~l~~-----~~~VI~D~ 75 (249)
T TIGR03574 1 LIILTGLPGVGKSTFSKELAKKLSEKNIDVIILGTDLIRESFPVWKEKYEEFIRDSTLYLIKTALKN-----KYSVIVDD 75 (249)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHHcCCceEEEccHHHHHHhHHhhHHhHHHHHHHHHHHHHHHHhC-----CCeEEEec
Confidence 479999999999999999999873 4556665553222 0111111111122223333322 34689998
Q ss_pred cccH-----HH---HhhcCCCcEEEEEecCHHHHHHHHhcccccccCCCccccccccccCCCCCCCCCCCCCCCCCcccc
Q 022951 148 FPRT-----EI---LEGVTDIDLVINLKLREEALLAKCLGRRICSECGGNYNVACIDIKGENGNPGMYMGPLLPPPHCAS 219 (289)
Q Consensus 148 ~p~~-----~~---l~~~~~~d~vI~Ld~~~e~l~~Rl~~R~~~~~~g~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (289)
.... +. ......+..+|||++|.+.+.+|...|...
T Consensus 76 ~~~~~~~r~~l~~~ak~~~~~~~~I~l~~p~e~~~~Rn~~R~~~------------------------------------ 119 (249)
T TIGR03574 76 TNYYNSMRRDLINIAKEYNKNYIIIYLKAPLDTLLRRNIERGEK------------------------------------ 119 (249)
T ss_pred cchHHHHHHHHHHHHHhCCCCEEEEEecCCHHHHHHHHHhCCCC------------------------------------
Confidence 4322 11 222334678999999999999998877310
Q ss_pred CccccCCCcHHHHHHHHHHHHHhchHHHHHHHHcCcEEEEeCCC--CcccHHHHHHHHhcc
Q 022951 220 KLITRSDDKEEVVRERLRIYNEKSRPVEEFYRRRGKLLEFDLPG--GIPESWPKLLQALNL 278 (289)
Q Consensus 220 ~L~~r~~d~~~~~~~rl~~y~~~~~~l~~~y~~~~~l~~id~~~--~~~ev~~~i~~~l~~ 278 (289)
...+.+...+..|.... ..+ ......++||++. +.++++..|...+..
T Consensus 120 -------~~~~~i~~l~~r~e~p~---~~~-~wd~~~~~vd~~~~~~~~ei~~~i~~~~~~ 169 (249)
T TIGR03574 120 -------IPNEVIKDMYEKFDEPG---TKY-SWDLPDLTIDTTKKIDYNEILEEILEISEN 169 (249)
T ss_pred -------CCHHHHHHHHHhhCCCC---CCC-CccCceEEecCCCCCCHHHHHHHHHHHhhc
Confidence 11344554444443321 111 1122578888876 557999999887754
No 75
>PRK07933 thymidylate kinase; Validated
Probab=99.31 E-value=9.9e-11 Score=102.37 Aligned_cols=163 Identities=20% Similarity=0.172 Sum_probs=90.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhC---CCee-------e---hHHHHHHHHHcC--CccCHHHHHHHH------H--HH
Q 022951 75 VQWVFLGCPGVGKGTYASRLSNLLG---VPHI-------A---TGDLLDEIVSQG--KLVSDEIIINLL------S--KR 131 (289)
Q Consensus 75 ~~Ivl~GppGsGKSTlak~La~~lg---~~~i-------~---~d~l~~~~l~~g--~~v~~~~~~~ll------~--~~ 131 (289)
|+|+|.|+.||||||+++.|++.+. ..++ . .++.+++++... ....+.....++ + ..
T Consensus 1 ~~IviEG~dGsGKST~~~~L~~~L~~~g~~v~~~~~P~~~~~~~g~~ir~~l~~~~~~~~~~~~~~~llf~a~R~~~~~~ 80 (213)
T PRK07933 1 MLIAIEGVDGAGKRTLTEALRAALEARGRSVATLAFPRYGRSVHADLAAEALHGRHGDLADSVYAMATLFALDRAGARDE 80 (213)
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCCCCCccHHHHHHHcCCCCcccCCHHHHHHHHhhhhhhhHHH
Confidence 5899999999999999999999883 2221 1 245566665532 111111111111 0 01
Q ss_pred HHcccccCCceEEEcCcccH---------------------HHHh----hcCCCcEEEEEecCHHHHHHHHhcccccccC
Q 022951 132 LEAGEAKGEAGFILDGFPRT---------------------EILE----GVTDIDLVINLKLREEALLAKCLGRRICSEC 186 (289)
Q Consensus 132 l~~~~~~~~~g~Ildg~p~~---------------------~~l~----~~~~~d~vI~Ld~~~e~l~~Rl~~R~~~~~~ 186 (289)
+... ...+..+|+|+|..+ ..+. .+..||++||||+|++..++|+.+|.... .
T Consensus 81 I~p~-l~~g~~VI~DRy~~S~~Ayq~~~~~~~~~~~~~~~~~~~~~~~~~~~~PDl~i~Ldv~~e~a~~Ri~~R~~~~-~ 158 (213)
T PRK07933 81 LAGL-LAAHDVVILDRYVASNAAYSAARLHQDADGEAVAWVAELEFGRLGLPVPDLQVLLDVPVELAAERARRRAAQD-A 158 (213)
T ss_pred HHHH-HhCCCEEEECCccchhHHHhccCCCcccchHHHHHHHHHHHhhcCCCCCCEEEEecCCHHHHHHHHHhhcccc-C
Confidence 1111 111456888875444 0111 11259999999999999999999885210 0
Q ss_pred CCccccccccccCCCCCCCCCCCCCCCCCccccCccccCCCcHHHHHHHHHHHHHhchHHHHHHHHcCcEEEEeCCCCcc
Q 022951 187 GGNYNVACIDIKGENGNPGMYMGPLLPPPHCASKLITRSDDKEEVVRERLRIYNEKSRPVEEFYRRRGKLLEFDLPGGIP 266 (289)
Q Consensus 187 g~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~r~~d~~~~~~~rl~~y~~~~~~l~~~y~~~~~l~~id~~~~~~ 266 (289)
+. .. .+.+...+.+++-.+.|.+.. ..+ ....++.||++++++
T Consensus 159 ~~--~~------------------------------d~~E~~~~f~~~v~~~Y~~~~----~~~-~~~~~~~ida~~~~e 201 (213)
T PRK07933 159 DR--AR------------------------------DAYERDDGLQQRTGAVYAELA----AQG-WGGPWLVVDPDVDPA 201 (213)
T ss_pred Cc--cc------------------------------ccccccHHHHHHHHHHHHHHH----Hhc-CCCCeEEeCCCCCHH
Confidence 00 00 011111222222223333322 111 134689999999999
Q ss_pred cHHHHHHHHh
Q 022951 267 ESWPKLLQAL 276 (289)
Q Consensus 267 ev~~~i~~~l 276 (289)
++.++|.+.|
T Consensus 202 ~v~~~i~~~~ 211 (213)
T PRK07933 202 ALAARLAAAL 211 (213)
T ss_pred HHHHHHHHHh
Confidence 9999998876
No 76
>TIGR00152 dephospho-CoA kinase. This model produces scores in the range of 0-25 bits against adenylate, guanylate, uridine, and thymidylate kinases.
Probab=99.31 E-value=2.9e-11 Score=103.44 Aligned_cols=144 Identities=25% Similarity=0.249 Sum_probs=89.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCeeehHHHHHHHHHcCCcc-------------------CH---------------
Q 022951 76 QWVFLGCPGVGKGTYASRLSNLLGVPHIATGDLLDEIVSQGKLV-------------------SD--------------- 121 (289)
Q Consensus 76 ~Ivl~GppGsGKSTlak~La~~lg~~~i~~d~l~~~~l~~g~~v-------------------~~--------------- 121 (289)
+|+|+|.+||||||+++.|++..|+++++.|++.++++..+..+ ..
T Consensus 1 ~i~itG~~gsGKst~~~~l~~~~~~~~i~~D~~~~~~~~~~~~~~~~i~~~fg~~i~~~~g~idr~~L~~~vf~~~~~~~ 80 (188)
T TIGR00152 1 IIGLTGGIGSGKSTVANYLADKYHFPVIDADKIAHQVVEKGSPAYEKIVDHFGAQILNEDGELDRKALGERVFNDPEELK 80 (188)
T ss_pred CEEEECCCCCCHHHHHHHHHHhcCCeEEeCCHHHHHHHhcCChHHHHHHHHHCHHHhCCCCCCCHHHHHHHHhCCHHHHH
Confidence 47899999999999999999988899999999986655443311 10
Q ss_pred -------HHHHHHHHHHHHcccccCCceEEEcCcccH-H-HHhhcCCCcEEEEEecCHHHHHHHHhcccccccCCCcccc
Q 022951 122 -------EIIINLLSKRLEAGEAKGEAGFILDGFPRT-E-ILEGVTDIDLVINLKLREEALLAKCLGRRICSECGGNYNV 192 (289)
Q Consensus 122 -------~~~~~ll~~~l~~~~~~~~~g~Ildg~p~~-~-~l~~~~~~d~vI~Ld~~~e~l~~Rl~~R~~~~~~g~~y~~ 192 (289)
..+...+.+.+...... +..+|++ .|.. + .+.. .+|.+|++++|.+.+.+|+..|.
T Consensus 81 ~le~ilhP~i~~~i~~~i~~~~~~-~~~vvi~-~pll~e~~~~~--~~D~vv~V~~~~~~~~~Rl~~R~----------- 145 (188)
T TIGR00152 81 WLNNLLHPLIREWMKKLLAQFQSK-LAYVLLD-VPLLFENKLRS--LCDRVIVVDVSPQLQLERLMQRD----------- 145 (188)
T ss_pred HHHHhhCHHHHHHHHHHHHHhhcC-CCEEEEE-chHhhhCCcHH--hCCEEEEEECCHHHHHHHHHHcC-----------
Confidence 00111122222221111 1244444 3332 1 1222 26999999999999999999884
Q ss_pred ccccccCCCCCCCCCCCCCCCCCccccCccccCCCcHHHHHHHHHHHHHhchHHHHHHHHcCcEEEEeCCCCcccHHHHH
Q 022951 193 ACIDIKGENGNPGMYMGPLLPPPHCASKLITRSDDKEEVVRERLRIYNEKSRPVEEFYRRRGKLLEFDLPGGIPESWPKL 272 (289)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~r~~d~~~~~~~rl~~y~~~~~~l~~~y~~~~~l~~id~~~~~~ev~~~i 272 (289)
..+.+.+.+|++..... ... .... -+.|+++++++++..++
T Consensus 146 ---------------------------------~~s~~~~~~r~~~q~~~----~~~-~~~a-d~vI~N~~~~e~l~~~~ 186 (188)
T TIGR00152 146 ---------------------------------NLTEEEVQKRLASQMDI----EER-LARA-DDVIDNSATLADLVKQL 186 (188)
T ss_pred ---------------------------------CCCHHHHHHHHHhcCCH----HHH-HHhC-CEEEECCCCHHHHHHHH
Confidence 12346677777664221 111 1112 25678889999999887
Q ss_pred H
Q 022951 273 L 273 (289)
Q Consensus 273 ~ 273 (289)
.
T Consensus 187 ~ 187 (188)
T TIGR00152 187 E 187 (188)
T ss_pred h
Confidence 5
No 77
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=99.30 E-value=9.6e-11 Score=99.10 Aligned_cols=106 Identities=17% Similarity=0.227 Sum_probs=66.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhCCC--eeehHHHHHHHHH-----------cC--CccCHHH---HHHHHHHHHHccc
Q 022951 75 VQWVFLGCPGVGKGTYASRLSNLLGVP--HIATGDLLDEIVS-----------QG--KLVSDEI---IINLLSKRLEAGE 136 (289)
Q Consensus 75 ~~Ivl~GppGsGKSTlak~La~~lg~~--~i~~d~l~~~~l~-----------~g--~~v~~~~---~~~ll~~~l~~~~ 136 (289)
.+|+|+|+|||||||+|+.|++.++.. +++.|++...+.. .+ ...+.+. ....+...+....
T Consensus 3 ~~i~l~G~~gsGKst~a~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~l 82 (175)
T cd00227 3 RIIILNGGSSAGKSSIARALQSVLAEPWLHFGVDSFIEALPLKCQDAEGGIEFDGDGGVSPGPEFRLLEGAWYEAVAAMA 82 (175)
T ss_pred CEEEEECCCCCCHHHHHHHHHHhhCCCccccCccHHHHhcChhhcccccccccCccCCcccchHHHHHHHHHHHHHHHHH
Confidence 579999999999999999999998654 5577777622110 00 1111111 2233333333222
Q ss_pred ccCCceEEEcC-cc-cH---HHHhhcCC-CcEEEEEecCHHHHHHHHhccc
Q 022951 137 AKGEAGFILDG-FP-RT---EILEGVTD-IDLVINLKLREEALLAKCLGRR 181 (289)
Q Consensus 137 ~~~~~g~Ildg-~p-~~---~~l~~~~~-~d~vI~Ld~~~e~l~~Rl~~R~ 181 (289)
.. +..+|+|. ++ .. +.+..+.. +-++|+|++|.+++.+|+.+|.
T Consensus 83 ~~-G~~VIvD~~~~~~~~~r~~~~~~~~~~~~~v~l~~~~~~l~~R~~~R~ 132 (175)
T cd00227 83 RA-GANVIADDVFLGRAALQDCWRSFVGLDVLWVGVRCPGEVAEGRETARG 132 (175)
T ss_pred hC-CCcEEEeeeccCCHHHHHHHHHhcCCCEEEEEEECCHHHHHHHHHhcC
Confidence 22 56899997 54 33 33333332 4579999999999999999884
No 78
>PLN02422 dephospho-CoA kinase
Probab=99.30 E-value=5.8e-11 Score=104.82 Aligned_cols=150 Identities=18% Similarity=0.187 Sum_probs=91.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhCCCeeehHHHHHHHHHcCCc-------------------cCHHH------------
Q 022951 75 VQWVFLGCPGVGKGTYASRLSNLLGVPHIATGDLLDEIVSQGKL-------------------VSDEI------------ 123 (289)
Q Consensus 75 ~~Ivl~GppGsGKSTlak~La~~lg~~~i~~d~l~~~~l~~g~~-------------------v~~~~------------ 123 (289)
++|.|+|++||||||+++.|+ ++|+++++.|++.++++..|.. +....
T Consensus 2 ~~igltG~igsGKstv~~~l~-~~g~~~idaD~~~~~l~~~g~~~~~~l~~~FG~~il~~dG~idR~~L~~~VF~d~~~~ 80 (232)
T PLN02422 2 RVVGLTGGIASGKSTVSNLFK-SSGIPVVDADKVARDVLKKGSGGWKRVVAAFGEDILLPDGEVDREKLGQIVFSDPSKR 80 (232)
T ss_pred eEEEEECCCCCCHHHHHHHHH-HCCCeEEehhHHHHHHHHhhHHHHHHHHHHhCHHhcCCCCcCCHHHHHHHHhCCHHHH
Confidence 368999999999999999998 6899999999998655544321 11110
Q ss_pred ------HHHH----HHHHHHcccccCCceEEEcCcccH-H-HHhhcCCCcEEEEEecCHHHHHHHHhcccccccCCCccc
Q 022951 124 ------IINL----LSKRLEAGEAKGEAGFILDGFPRT-E-ILEGVTDIDLVINLKLREEALLAKCLGRRICSECGGNYN 191 (289)
Q Consensus 124 ------~~~l----l~~~l~~~~~~~~~g~Ildg~p~~-~-~l~~~~~~d~vI~Ld~~~e~l~~Rl~~R~~~~~~g~~y~ 191 (289)
+... +...+..........+|+|. |.. + .+.. .+|.+|++++|.+...+|+..|+.
T Consensus 81 ~~Le~IlHP~V~~~~~~~~~~~~~~~~~~vv~ei-pLL~E~~~~~--~~D~vI~V~a~~e~ri~RL~~R~g--------- 148 (232)
T PLN02422 81 QLLNRLLAPYISSGIFWEILKLWLKGCKVIVLDI-PLLFETKMDK--WTKPVVVVWVDPETQLERLMARDG--------- 148 (232)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHhcCCCEEEEEe-hhhhhcchhh--hCCEEEEEECCHHHHHHHHHHcCC---------
Confidence 1111 11111111111123455554 222 1 1222 369999999999999999999851
Q ss_pred cccccccCCCCCCCCCCCCCCCCCccccCccccCCCcHHHHHHHHHHHHHhchHHHHHHHHcCcEEEEeCCCCcccHHHH
Q 022951 192 VACIDIKGENGNPGMYMGPLLPPPHCASKLITRSDDKEEVVRERLRIYNEKSRPVEEFYRRRGKLLEFDLPGGIPESWPK 271 (289)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~r~~d~~~~~~~rl~~y~~~~~~l~~~y~~~~~l~~id~~~~~~ev~~~ 271 (289)
-+.+.+..|++.-... .. ...... +.|+++++++++..+
T Consensus 149 -----------------------------------~s~eea~~Ri~~Q~~~----ee-k~~~AD-~VI~N~gs~e~L~~q 187 (232)
T PLN02422 149 -----------------------------------LSEEQARNRINAQMPL----DW-KRSKAD-IVIDNSGSLEDLKQQ 187 (232)
T ss_pred -----------------------------------CCHHHHHHHHHHcCCh----hH-HHhhCC-EEEECCCCHHHHHHH
Confidence 1245666666331111 11 112222 478888999999999
Q ss_pred HHHHhcc
Q 022951 272 LLQALNL 278 (289)
Q Consensus 272 i~~~l~~ 278 (289)
+.++++.
T Consensus 188 v~~ll~~ 194 (232)
T PLN02422 188 FQKVLEK 194 (232)
T ss_pred HHHHHHH
Confidence 9888754
No 79
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=99.30 E-value=5.2e-11 Score=97.85 Aligned_cols=106 Identities=25% Similarity=0.317 Sum_probs=69.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCeeehHHHHHH----HHHcCCccCH---HHHHHHHHHHHHcccccCCceEEEcC-
Q 022951 76 QWVFLGCPGVGKGTYASRLSNLLGVPHIATGDLLDE----IVSQGKLVSD---EIIINLLSKRLEAGEAKGEAGFILDG- 147 (289)
Q Consensus 76 ~Ivl~GppGsGKSTlak~La~~lg~~~i~~d~l~~~----~l~~g~~v~~---~~~~~ll~~~l~~~~~~~~~g~Ildg- 147 (289)
+|+|+|+|||||||+|+.|++.++..+++.|.+... .+..|...++ +.+...+...........+..+|+|.
T Consensus 1 li~l~G~~GsGKST~a~~l~~~~~~~~i~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~vVid~~ 80 (150)
T cd02021 1 IIVVMGVSGSGKSTVGKALAERLGAPFIDGDDLHPPANIAKMAAGIPLNDEDRWPWLQALTDALLAKLASAGEGVVVACS 80 (150)
T ss_pred CEEEEcCCCCCHHHHHHHHHhhcCCEEEeCcccccHHHHHHHHcCCCCCccchhhHHHHHHHHHHHHHHhCCCCEEEEec
Confidence 478999999999999999999999999999887743 2334443332 22222222222111111145788885
Q ss_pred cccH---HHHhhc--CCCcEEEEEecCHHHHHHHHhccc
Q 022951 148 FPRT---EILEGV--TDIDLVINLKLREEALLAKCLGRR 181 (289)
Q Consensus 148 ~p~~---~~l~~~--~~~d~vI~Ld~~~e~l~~Rl~~R~ 181 (289)
+... ..+..+ .....+|||++|.+++.+|+.+|.
T Consensus 81 ~~~~~~r~~~~~~~~~~~~~~v~l~~~~~~~~~R~~~R~ 119 (150)
T cd02021 81 ALKRIYRDILRGGAANPRVRFVHLDGPREVLAERLAARK 119 (150)
T ss_pred cccHHHHHHHHhcCCCCCEEEEEEECCHHHHHHHHHhcc
Confidence 4333 334443 235679999999999999999985
No 80
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=99.29 E-value=1e-10 Score=96.07 Aligned_cols=103 Identities=20% Similarity=0.226 Sum_probs=64.8
Q ss_pred EEEEcCCCCCHHHHHHHHHHHhCCCeeehHHHHHHHHHcCC-----ccCHHHHHHHHHHHHHcccccCCceEEEc-Cc--
Q 022951 77 WVFLGCPGVGKGTYASRLSNLLGVPHIATGDLLDEIVSQGK-----LVSDEIIINLLSKRLEAGEAKGEAGFILD-GF-- 148 (289)
Q Consensus 77 Ivl~GppGsGKSTlak~La~~lg~~~i~~d~l~~~~l~~g~-----~v~~~~~~~ll~~~l~~~~~~~~~g~Ild-g~-- 148 (289)
|+|+|+|||||||+++.|++.+|+.+++.|+++......+. ....+.+...-...+..... ..++|++ |.
T Consensus 2 i~l~G~~GsGKstla~~la~~l~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~--~~~~vi~~g~~~ 79 (154)
T cd00464 2 IVLIGMMGAGKTTVGRLLAKALGLPFVDLDELIEQRAGMSIPEIFAEEGEEGFRELEREVLLLLLT--KENAVIATGGGA 79 (154)
T ss_pred EEEEcCCCCCHHHHHHHHHHHhCCCEEEchHHHHHHcCCCHHHHHHHHCHHHHHHHHHHHHHHHhc--cCCcEEECCCCc
Confidence 78999999999999999999999999999988855432110 00111222221222222111 1244554 31
Q ss_pred ccH-HHHhhcCCCcEEEEEecCHHHHHHHHhccc
Q 022951 149 PRT-EILEGVTDIDLVINLKLREEALLAKCLGRR 181 (289)
Q Consensus 149 p~~-~~l~~~~~~d~vI~Ld~~~e~l~~Rl~~R~ 181 (289)
... .....+....++|||++|.+.+.+|+..|.
T Consensus 80 i~~~~~~~~~~~~~~~i~l~~~~e~~~~R~~~r~ 113 (154)
T cd00464 80 VLREENRRLLLENGIVVWLDASPEELLERLARDK 113 (154)
T ss_pred cCcHHHHHHHHcCCeEEEEeCCHHHHHHHhccCC
Confidence 111 222333446789999999999999998874
No 81
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=99.29 E-value=5.3e-12 Score=99.78 Aligned_cols=105 Identities=29% Similarity=0.389 Sum_probs=64.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCeeehHHHH--HHHHHcCCccC--HHHHHHHHHHHHHcccc-cCCceEEEcCccc
Q 022951 76 QWVFLGCPGVGKGTYASRLSNLLGVPHIATGDLL--DEIVSQGKLVS--DEIIINLLSKRLEAGEA-KGEAGFILDGFPR 150 (289)
Q Consensus 76 ~Ivl~GppGsGKSTlak~La~~lg~~~i~~d~l~--~~~l~~g~~v~--~~~~~~ll~~~l~~~~~-~~~~g~Ildg~p~ 150 (289)
+|+|.|+|||||||+|+.|+++||+++++.|+++ ..+........ .....+.+...+..... .....||+||...
T Consensus 1 vI~I~G~~gsGKST~a~~La~~~~~~~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ii~g~~~ 80 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAERLGFPVISMDDLIREPGWIERDDDEREYIDADIDLLDDILEQLQNKPDNDNWIIDGSYE 80 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHTCEEEEEHHHHCCGTHCHGCTTCCHHHHHHHHHHHHHHHHHHETTT--EEEEECCSC
T ss_pred CEEEECCCCCCHHHHHHHHHHHHCCeEEEecceEEeccccccCcchhhHHHHHHHHHHHHHHhhhccCCCCeEEEeCCCc
Confidence 5899999999999999999999999999999953 11111112221 12233334443333211 1145899999322
Q ss_pred H-HHHhhcCCCcEEEEEecCHHHHHHHHhccc
Q 022951 151 T-EILEGVTDIDLVINLKLREEALLAKCLGRR 181 (289)
Q Consensus 151 ~-~~l~~~~~~d~vI~Ld~~~e~l~~Rl~~R~ 181 (289)
. ..+ .+...+.+||++++.+...+|+.+|+
T Consensus 81 ~~~~~-~~~~~~~~i~l~~~~~~~~~~~~~R~ 111 (121)
T PF13207_consen 81 SEMEI-RLPEFDHVIYLDAPDEECRERRLKRR 111 (121)
T ss_dssp HCCHS-CCHHGGCEEEEEEEEHHHHHHHHHHH
T ss_pred cchhh-hhhcCCEEEEEECCCHHHHHHHHHHH
Confidence 3 111 22235789999999986666665554
No 82
>PRK05541 adenylylsulfate kinase; Provisional
Probab=99.28 E-value=1.5e-11 Score=103.88 Aligned_cols=107 Identities=21% Similarity=0.102 Sum_probs=64.3
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHHHhC-----CCeeehHHHHHHHHHc-CCccCHHHHHHHHHHHHHcccccCCceEEE
Q 022951 72 GKHVQWVFLGCPGVGKGTYASRLSNLLG-----VPHIATGDLLDEIVSQ-GKLVSDEIIINLLSKRLEAGEAKGEAGFIL 145 (289)
Q Consensus 72 ~~~~~Ivl~GppGsGKSTlak~La~~lg-----~~~i~~d~l~~~~l~~-g~~v~~~~~~~ll~~~l~~~~~~~~~g~Il 145 (289)
.++.+|+|+|+|||||||+++.|++.+. ..+++.|.+. +.+.. +...............+.......+..+|+
T Consensus 5 ~~~~~I~i~G~~GsGKst~a~~l~~~l~~~~~~~~~~~~d~~r-~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~VI~ 83 (176)
T PRK05541 5 PNGYVIWITGLAGSGKTTIAKALYERLKLKYSNVIYLDGDELR-EILGHYGYDKQSRIEMALKRAKLAKFLADQGMIVIV 83 (176)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEecHHHH-hhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCCEEEE
Confidence 3567999999999999999999999885 5677776654 33322 211111111111111111111111457888
Q ss_pred cCcccH----HHHhhcCCCcEEEEEecCHHHHHHHHhc
Q 022951 146 DGFPRT----EILEGVTDIDLVINLKLREEALLAKCLG 179 (289)
Q Consensus 146 dg~p~~----~~l~~~~~~d~vI~Ld~~~e~l~~Rl~~ 179 (289)
|+.... ........+.++|||++|.+++.+|+.+
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~v~l~~~~e~~~~R~~~ 121 (176)
T PRK05541 84 TTISMFDEIYAYNRKHLPNYFEVYLKCDMEELIRRDQK 121 (176)
T ss_pred EeCCcHHHHHHHHHhhcCCeEEEEEeCCHHHHHHhchh
Confidence 873322 2233333456899999999999999753
No 83
>COG0283 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=99.28 E-value=1.5e-11 Score=105.94 Aligned_cols=35 Identities=31% Similarity=0.411 Sum_probs=34.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhCCCeeehHHHH
Q 022951 75 VQWVFLGCPGVGKGTYASRLSNLLGVPHIATGDLL 109 (289)
Q Consensus 75 ~~Ivl~GppGsGKSTlak~La~~lg~~~i~~d~l~ 109 (289)
++|.|.||.||||||+|+.||++||+.|++++.++
T Consensus 5 ~~IAIDGPagsGKsTvak~lA~~Lg~~yldTGamY 39 (222)
T COG0283 5 IIIAIDGPAGSGKSTVAKILAEKLGFHYLDTGAMY 39 (222)
T ss_pred eEEEEeCCCccChHHHHHHHHHHhCCCeecccHHH
Confidence 78999999999999999999999999999999988
No 84
>PRK13976 thymidylate kinase; Provisional
Probab=99.28 E-value=3.9e-10 Score=98.32 Aligned_cols=157 Identities=15% Similarity=0.074 Sum_probs=90.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhCC-----Cee-e-------hHHHHHHHHHcCCccCHHHH----H----HHHHHHHH
Q 022951 75 VQWVFLGCPGVGKGTYASRLSNLLGV-----PHI-A-------TGDLLDEIVSQGKLVSDEII----I----NLLSKRLE 133 (289)
Q Consensus 75 ~~Ivl~GppGsGKSTlak~La~~lg~-----~~i-~-------~d~l~~~~l~~g~~v~~~~~----~----~ll~~~l~ 133 (289)
++|+|.|+.||||||+++.|++.|.- ..+ . .++.+++++........... . +.+.+.+.
T Consensus 1 ~fIv~EGiDGsGKsTq~~~L~~~L~~~~g~~~v~~~~eP~~~~~g~~ir~~l~~~~~~~~~~~~llf~a~R~~~~~~~I~ 80 (209)
T PRK13976 1 MFITFEGIDGSGKTTQSRLLAEYLSDIYGENNVVLTREPGGTSFNELVRGLLLSLKNLDKISELLLFIAMRREHFVKVIL 80 (209)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHhcCCcceEEeeCCCCCHHHHHHHHHHcCCcCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 57999999999999999999988732 111 1 35555565543211221111 0 01111111
Q ss_pred cccccCCceEEEcCcccH-------------HHHh---h---cCCCcEEEEEecCHHHHHHHHhcccccccCCCcccccc
Q 022951 134 AGEAKGEAGFILDGFPRT-------------EILE---G---VTDIDLVINLKLREEALLAKCLGRRICSECGGNYNVAC 194 (289)
Q Consensus 134 ~~~~~~~~g~Ildg~p~~-------------~~l~---~---~~~~d~vI~Ld~~~e~l~~Rl~~R~~~~~~g~~y~~~~ 194 (289)
.. ...+..+|.|.|..+ +.+. . ...||++||||+|+++.++|+..|+.+
T Consensus 81 p~-l~~G~~VI~DRy~~S~~Ayq~~~~g~~~~~i~~l~~~~~~~~PDl~i~Ldv~~e~a~~Ri~~~~~e----------- 148 (209)
T PRK13976 81 PA-LLQGKIVICDRFIDSTIAYQGYGCGVDLSLIRDLNDLVVDKYPDITFVLDIDIELSLSRADKNGYE----------- 148 (209)
T ss_pred HH-HHCCCEEEECCCcCHHHHhccccCCCCHHHHHHHHHHhhCCCCCEEEEEeCCHHHHHHHhcccchh-----------
Confidence 11 111457888886555 1111 1 125999999999999999999644211
Q ss_pred ccccCCCCCCCCCCCCCCCCCccccCccccCCCcHHHHHHHHHHHHHhchHHHHHHHHcCcEEEEeC---CCC---cccH
Q 022951 195 IDIKGENGNPGMYMGPLLPPPHCASKLITRSDDKEEVVRERLRIYNEKSRPVEEFYRRRGKLLEFDL---PGG---IPES 268 (289)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~L~~r~~d~~~~~~~rl~~y~~~~~~l~~~y~~~~~l~~id~---~~~---~~ev 268 (289)
....+.+++-.+.|.+... . ....++.||+ .++ ++++
T Consensus 149 -------------------------------~~~~~~l~~v~~~Y~~l~~----~--~~~~~~~id~~~~~~~~~~~e~v 191 (209)
T PRK13976 149 -------------------------------FMDLEFYDKVRKGFREIVI----K--NPHRCHVITCIDAKDNIEDINSV 191 (209)
T ss_pred -------------------------------cccHHHHHHHHHHHHHHHH----h--CCCCeEEEECCCCccCcCCHHHH
Confidence 1123334333344444321 1 1235788888 345 8899
Q ss_pred HHHHHHHhccCC
Q 022951 269 WPKLLQALNLED 280 (289)
Q Consensus 269 ~~~i~~~l~~~~ 280 (289)
.++|.++|....
T Consensus 192 ~~~i~~~i~~~~ 203 (209)
T PRK13976 192 HLEIVKLLHAVT 203 (209)
T ss_pred HHHHHHHHHHHH
Confidence 999998886554
No 85
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=99.27 E-value=2.1e-11 Score=99.22 Aligned_cols=101 Identities=25% Similarity=0.295 Sum_probs=64.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCeeehHHHHHHHHHcC--CccCHHHHHHHHHHHHHcccccCCceEEEcCcccHHH
Q 022951 76 QWVFLGCPGVGKGTYASRLSNLLGVPHIATGDLLDEIVSQG--KLVSDEIIINLLSKRLEAGEAKGEAGFILDGFPRTEI 153 (289)
Q Consensus 76 ~Ivl~GppGsGKSTlak~La~~lg~~~i~~d~l~~~~l~~g--~~v~~~~~~~ll~~~l~~~~~~~~~g~Ildg~p~~~~ 153 (289)
+|+|+|+|||||||+|+.|++.+|+++++.+.+..+.+... .......+...+...+..... ...||+||......
T Consensus 1 ~I~i~G~~GsGKst~a~~la~~~~~~~~~~~~i~~e~~~~~~~~~~~~~~i~~~l~~~~~~~~~--~~~~Vidg~~~~~~ 78 (147)
T cd02020 1 IIAIDGPAGSGKSTVAKLLAKKLGLPYLDTGGIRTEEVGKLASEVAAIPEVRKALDERQRELAK--KPGIVLEGRDIGTV 78 (147)
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCCceeccccCCHHHHHHHHHHhcccHhHHHHHHHHHHHHhh--CCCEEEEeeeeeeE
Confidence 47899999999999999999999999999874432221110 000011122222222222111 34799998433211
Q ss_pred HhhcCCCcEEEEEecCHHHHHHHHhcc
Q 022951 154 LEGVTDIDLVINLKLREEALLAKCLGR 180 (289)
Q Consensus 154 l~~~~~~d~vI~Ld~~~e~l~~Rl~~R 180 (289)
+ ....+++|||++|++...+|+..|
T Consensus 79 ~--~~~~~~~i~l~~~~~~r~~R~~~r 103 (147)
T cd02020 79 V--FPDADLKIFLTASPEVRAKRRAKQ 103 (147)
T ss_pred E--cCCCCEEEEEECCHHHHHHHHHHH
Confidence 1 223689999999999999999885
No 86
>PRK14021 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional
Probab=99.26 E-value=1.4e-10 Score=114.48 Aligned_cols=103 Identities=17% Similarity=0.268 Sum_probs=67.8
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhCCCeeehHHHHHHHH---------HcCCccCHHHHHHHHHHHHHcccccCCceE
Q 022951 73 KHVQWVFLGCPGVGKGTYASRLSNLLGVPHIATGDLLDEIV---------SQGKLVSDEIIINLLSKRLEAGEAKGEAGF 143 (289)
Q Consensus 73 ~~~~Ivl~GppGsGKSTlak~La~~lg~~~i~~d~l~~~~l---------~~g~~v~~~~~~~ll~~~l~~~~~~~~~g~ 143 (289)
+...|+|+|+|||||||+++.||+.+|++++|+|+++++.. ..|+....+...+.+.+.+.. ...+
T Consensus 5 ~~~~i~LiG~~GaGKttvg~~LA~~L~~~fiD~D~~ie~~~g~si~eif~~~Ge~~FR~~E~~~l~~~~~~-----~~~V 79 (542)
T PRK14021 5 RRPQAVIIGMMGAGKTRVGKEVAQMMRLPFADADVEIEREIGMSIPSYFEEYGEPAFREVEADVVADMLED-----FDGI 79 (542)
T ss_pred CCccEEEECCCCCCHHHHHHHHHHHhCCCEEEchHHHHHHHCcCHHHHHHHHHHHHHHHHHHHHHHHHHhc-----CCeE
Confidence 45789999999999999999999999999999999984422 233333333333444433221 1234
Q ss_pred EEcC--cccH----HHHhh-cCCCcEEEEEecCHHHHHHHHhcc
Q 022951 144 ILDG--FPRT----EILEG-VTDIDLVINLKLREEALLAKCLGR 180 (289)
Q Consensus 144 Ildg--~p~~----~~l~~-~~~~d~vI~Ld~~~e~l~~Rl~~R 180 (289)
|-.| .+.. +.+.. +.....+|||+++.+.+.+|+..+
T Consensus 80 Is~GGG~v~~~~n~~~L~~~~~~~g~vv~L~~~~~~l~~Rl~~~ 123 (542)
T PRK14021 80 FSLGGGAPMTPSTQHALASYIAHGGRVVYLDADPKEAMERANRG 123 (542)
T ss_pred EECCCchhCCHHHHHHHHHHHhcCCEEEEEECCHHHHHHHHhCC
Confidence 4333 2222 22322 123458999999999999999644
No 87
>PRK14733 coaE dephospho-CoA kinase; Provisional
Probab=99.25 E-value=1.5e-10 Score=100.34 Aligned_cols=153 Identities=16% Similarity=0.135 Sum_probs=95.1
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhCCCeeehHHHHHHHHHcCC-----------------ccCH--------------
Q 022951 73 KHVQWVFLGCPGVGKGTYASRLSNLLGVPHIATGDLLDEIVSQGK-----------------LVSD-------------- 121 (289)
Q Consensus 73 ~~~~Ivl~GppGsGKSTlak~La~~lg~~~i~~d~l~~~~l~~g~-----------------~v~~-------------- 121 (289)
.+++|.|+|++||||||+++.|++.+|+++++.|.+.++.+..+. .+..
T Consensus 5 ~~~~IglTG~iGsGKStv~~~l~~~lg~~vidaD~i~~~l~~~~~~~~~i~~~fG~~i~~~g~idR~~L~~~vF~d~~~~ 84 (204)
T PRK14733 5 NTYPIGITGGIASGKSTATRILKEKLNLNVVCADTISREITKKPSVIKKIAEKFGDEIVMNKQINRAMLRAIITESKEAK 84 (204)
T ss_pred ceEEEEEECCCCCCHHHHHHHHHHHcCCeEEeccHHHHHHHCchHHHHHHHHHhCHHhccCCCcCHHHHHHHHhCCHHHH
Confidence 468899999999999999999999999999999888855543211 0111
Q ss_pred --------HHHHHHHHHHHHcccccCCceEEEcCcccH-HH-HhhcCCCcEEEEEecCHHHHHHHHhcccccccCCCccc
Q 022951 122 --------EIIINLLSKRLEAGEAKGEAGFILDGFPRT-EI-LEGVTDIDLVINLKLREEALLAKCLGRRICSECGGNYN 191 (289)
Q Consensus 122 --------~~~~~ll~~~l~~~~~~~~~g~Ildg~p~~-~~-l~~~~~~d~vI~Ld~~~e~l~~Rl~~R~~~~~~g~~y~ 191 (289)
..+...+.+.+.... ..-+|+|. |.. +. +.....+|.+|++++|.+...+|+..|..
T Consensus 85 ~~Le~i~HP~V~~~~~~~~~~~~---~~~vv~ei-pLL~E~~~~~~~~~D~vi~V~a~~e~ri~Rl~~Rd~--------- 151 (204)
T PRK14733 85 KWLEDYLHPVINKEIKKQVKESD---TVMTIVDI-PLLGPYNFRHYDYLKKVIVIKADLETRIRRLMERDG--------- 151 (204)
T ss_pred HHHHhhhhHHHHHHHHHHHHhcC---CCeEEEEe-chhhhccCchhhhCCEEEEEECCHHHHHHHHHHcCC---------
Confidence 011111222222211 23456654 221 11 10011369999999999999999998841
Q ss_pred cccccccCCCCCCCCCCCCCCCCCccccCccccCCCcHHHHHHHHHHHHHhchHHHHHHHHcCcEEEEeCCC-CcccHHH
Q 022951 192 VACIDIKGENGNPGMYMGPLLPPPHCASKLITRSDDKEEVVRERLRIYNEKSRPVEEFYRRRGKLLEFDLPG-GIPESWP 270 (289)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~r~~d~~~~~~~rl~~y~~~~~~l~~~y~~~~~l~~id~~~-~~~ev~~ 270 (289)
-+.+.+..|++.-... .+.- +... +.|++++ +.+++..
T Consensus 152 -----------------------------------~s~~~a~~ri~~Q~~~----eek~-~~aD-~VI~N~g~~~~~l~~ 190 (204)
T PRK14733 152 -----------------------------------KNRQQAVAFINLQISD----KERE-KIAD-FVIDNTELTDQELES 190 (204)
T ss_pred -----------------------------------CCHHHHHHHHHhCCCH----HHHH-HhCC-EEEECcCCCHHHHHH
Confidence 2345666666442111 1111 1222 5688888 9999999
Q ss_pred HHHHHhccC
Q 022951 271 KLLQALNLE 279 (289)
Q Consensus 271 ~i~~~l~~~ 279 (289)
++.++++.-
T Consensus 191 ~~~~~~~~~ 199 (204)
T PRK14733 191 KLITTINEI 199 (204)
T ss_pred HHHHHHHHH
Confidence 999888754
No 88
>COG0237 CoaE Dephospho-CoA kinase [Coenzyme metabolism]
Probab=99.25 E-value=9.9e-11 Score=101.27 Aligned_cols=150 Identities=23% Similarity=0.250 Sum_probs=93.4
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHHHhCCCeeehHHHHHHHHHcCC------------ccC--H---------------H--
Q 022951 74 HVQWVFLGCPGVGKGTYASRLSNLLGVPHIATGDLLDEIVSQGK------------LVS--D---------------E-- 122 (289)
Q Consensus 74 ~~~Ivl~GppGsGKSTlak~La~~lg~~~i~~d~l~~~~l~~g~------------~v~--~---------------~-- 122 (289)
+++|.|+|.+||||||+|+.+++ +|++.++.|++.++.+..|. .+. + .
T Consensus 2 ~~iIglTG~igsGKStva~~~~~-~G~~vidaD~v~r~~~~~~~~~~~~i~~~fG~~i~~~dg~~~r~~L~~~vf~~~~~ 80 (201)
T COG0237 2 MLIIGLTGGIGSGKSTVAKILAE-LGFPVIDADDVAREVVEPGGEALQEIAERFGLEILDEDGGLDRRKLREKVFNDPEA 80 (201)
T ss_pred ceEEEEecCCCCCHHHHHHHHHH-cCCeEEEccHHHHHHHhccchHHHHHHHHcCCcccCCCchhHHHHHHHHHcCCHHH
Confidence 47899999999999999999999 99999999999975544332 111 1 0
Q ss_pred --HHHH----HHHHHH---HcccccCCceEEEcCcccH-HH-HhhcCCCcEEEEEecCHHHHHHHHhcccccccCCCccc
Q 022951 123 --IIIN----LLSKRL---EAGEAKGEAGFILDGFPRT-EI-LEGVTDIDLVINLKLREEALLAKCLGRRICSECGGNYN 191 (289)
Q Consensus 123 --~~~~----ll~~~l---~~~~~~~~~g~Ildg~p~~-~~-l~~~~~~d~vI~Ld~~~e~l~~Rl~~R~~~~~~g~~y~ 191 (289)
++.. ++...+ .... ..++++--.|.. +. ... .+|.+|++++|++..++|+.+|.
T Consensus 81 ~~~Le~i~hPli~~~~~~~~~~~---~~~~~~~eiplL~e~~~~~--~~d~Vi~V~a~~e~r~eRl~~R~---------- 145 (201)
T COG0237 81 RLKLEKILHPLIRAEIKVVIDGA---RSPYVVLEIPLLFEAGGEK--YFDKVIVVYAPPEIRLERLMKRD---------- 145 (201)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHh---hCCceEEEchHHHhccccc--cCCEEEEEECCHHHHHHHHHhcC----------
Confidence 0111 111111 1111 112333333333 11 111 16899999999999999999984
Q ss_pred cccccccCCCCCCCCCCCCCCCCCccccCccccCCCcHHHHHHHHHHHHHhchHHHHHHHHcCcEEEEeCCCCcccHHHH
Q 022951 192 VACIDIKGENGNPGMYMGPLLPPPHCASKLITRSDDKEEVVRERLRIYNEKSRPVEEFYRRRGKLLEFDLPGGIPESWPK 271 (289)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~r~~d~~~~~~~rl~~y~~~~~~l~~~y~~~~~l~~id~~~~~~ev~~~ 271 (289)
.++.+.+..++..-....+. +... =+.++++++++.+.++
T Consensus 146 ----------------------------------~~~~e~~~~~~~~Q~~~~ek----~~~a--d~vi~n~~~i~~l~~~ 185 (201)
T COG0237 146 ----------------------------------GLDEEDAEARLASQRDLEEK----LALA--DVVIDNDGSIENLLEQ 185 (201)
T ss_pred ----------------------------------CCCHHHHHHHHHhcCCHHHH----Hhhc--CChhhcCCCHHHHHHH
Confidence 23455666666543332221 2111 2457889999999999
Q ss_pred HHHHhccC
Q 022951 272 LLQALNLE 279 (289)
Q Consensus 272 i~~~l~~~ 279 (289)
|...+..-
T Consensus 186 i~~~~~~~ 193 (201)
T COG0237 186 IEKLLKEL 193 (201)
T ss_pred HHHHHHHH
Confidence 98887654
No 89
>PTZ00451 dephospho-CoA kinase; Provisional
Probab=99.24 E-value=2e-10 Score=102.23 Aligned_cols=152 Identities=16% Similarity=0.126 Sum_probs=94.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhCCCeeehHHHHHHHHHcCCc-------------------cCHHH------------
Q 022951 75 VQWVFLGCPGVGKGTYASRLSNLLGVPHIATGDLLDEIVSQGKL-------------------VSDEI------------ 123 (289)
Q Consensus 75 ~~Ivl~GppGsGKSTlak~La~~lg~~~i~~d~l~~~~l~~g~~-------------------v~~~~------------ 123 (289)
++|.|+|.+||||||+++.|.+++|++.|+.|.+.++.++.|.. +....
T Consensus 2 ~iIGlTGgIgSGKStVs~~L~~~~G~~viDaD~iar~l~~~~~~~~~~i~~~Fg~~i~~~dg~idR~~L~~~VF~d~~~~ 81 (244)
T PTZ00451 2 ILIGLTGGIACGKSTVSRILREEHHIEVIDADLVVRELQAPNMACTRKIAARWPLCVHPETGELNRAELGKIIFSDAQAR 81 (244)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHcCCeEEehHHHHHHHHcCChHHHHHHHHHhchhhcCCCCcCCHHHHHHHHhCCHHHH
Confidence 57899999999999999999999999999999998655443321 11110
Q ss_pred ----------HHHHHHHHHHcc---------cccCCceEEEcCcccHH--HHhhcCCCcEEEEEecCHHHHHHHHhcccc
Q 022951 124 ----------IINLLSKRLEAG---------EAKGEAGFILDGFPRTE--ILEGVTDIDLVINLKLREEALLAKCLGRRI 182 (289)
Q Consensus 124 ----------~~~ll~~~l~~~---------~~~~~~g~Ildg~p~~~--~l~~~~~~d~vI~Ld~~~e~l~~Rl~~R~~ 182 (289)
+...+.+.+... ......-+|+|.-...+ .... -+|.+|++++|.+...+|+..|+
T Consensus 82 ~~Le~i~HP~V~~~i~~~i~~~~~~~~~~~~~~~~~~~vv~evPLL~E~~~~~~--~~D~iv~V~a~~e~ri~RL~~R~- 158 (244)
T PTZ00451 82 RALGRIMNPPIFRAILKRIAAAWWEDLWRSGAGSSPLIVVLDAPTLFETKTFTY--FVSASVVVSCSEERQIERLRKRN- 158 (244)
T ss_pred HHHHHHhCHHHHHHHHHHHHHhhhhhhhhhhhccCCCEEEEEechhhccCchhh--cCCeEEEEECCHHHHHHHHHHcC-
Confidence 011111112100 00101256676521111 1111 26999999999999999999884
Q ss_pred cccCCCccccccccccCCCCCCCCCCCCCCCCCccccCccccCCCcHHHHHHHHHHHHHhchHHHHHHHHcCcEEEEeCC
Q 022951 183 CSECGGNYNVACIDIKGENGNPGMYMGPLLPPPHCASKLITRSDDKEEVVRERLRIYNEKSRPVEEFYRRRGKLLEFDLP 262 (289)
Q Consensus 183 ~~~~g~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~r~~d~~~~~~~rl~~y~~~~~~l~~~y~~~~~l~~id~~ 262 (289)
.-+.+.+++|++. +... .+ ..+... +.|+++
T Consensus 159 -------------------------------------------g~s~eea~~Ri~~---Q~~~-~e-k~~~aD-~VI~N~ 189 (244)
T PTZ00451 159 -------------------------------------------GFSKEEALQRIGS---QMPL-EE-KRRLAD-YIIEND 189 (244)
T ss_pred -------------------------------------------CCCHHHHHHHHHh---CCCH-HH-HHHhCC-EEEECC
Confidence 2235677777755 2221 11 222333 356667
Q ss_pred --CCcccHHHHHHHHhcc
Q 022951 263 --GGIPESWPKLLQALNL 278 (289)
Q Consensus 263 --~~~~ev~~~i~~~l~~ 278 (289)
++++++..++.+++..
T Consensus 190 ~~g~~~~L~~~v~~~~~~ 207 (244)
T PTZ00451 190 SADDLDELRGSVCDCVAW 207 (244)
T ss_pred CCCCHHHHHHHHHHHHHH
Confidence 8999999999988743
No 90
>PF01202 SKI: Shikimate kinase; InterPro: IPR000623 Shikimate kinase (2.7.1.71 from EC) catalyses the fifth step in the biosynthesis of aromatic amino acids from chorismate (the so-called shikimate pathway) []. The enzyme catalyses the following reaction: ATP + shikimate = ADP + shikimate-3-phosphate The protein is found in bacteria (gene aroK or aroL), plants and fungi (where it is part of a multifunctional enzyme that catalyses five consecutive steps in this pathway). In 1994, the 3D structure of shikimate kinase was predicted to be very close to that of adenylate kinase, suggesting a functional similarity as well as an evolutionary relationship []. This prediction has since been confirmed experimentally. The protein is reported to possess an alpha/beta fold, consisting of a central sheet of five parallel beta-strands flanked by alpha-helices. Such a topology is very similar to that of adenylate kinase [].; GO: 0004765 shikimate kinase activity, 0005524 ATP binding; PDB: 3VAA_C 1KO8_B 1KO4_B 1KO1_A 1KOF_A 1KNQ_A 1KO5_A 1KAG_A 2PT5_D 1SHK_A ....
Probab=99.24 E-value=1.1e-10 Score=97.29 Aligned_cols=96 Identities=29% Similarity=0.293 Sum_probs=57.7
Q ss_pred CCCCHHHHHHHHHHHhCCCeeehHHHHHHHHHcCCccC-------HHHHHHHHHHHHHcccccCCceEEEcC--cccH-H
Q 022951 83 PGVGKGTYASRLSNLLGVPHIATGDLLDEIVSQGKLVS-------DEIIINLLSKRLEAGEAKGEAGFILDG--FPRT-E 152 (289)
Q Consensus 83 pGsGKSTlak~La~~lg~~~i~~d~l~~~~l~~g~~v~-------~~~~~~ll~~~l~~~~~~~~~g~Ildg--~p~~-~ 152 (289)
|||||||+++.||+.+|++++|+|+++.+.. |..+. .+.+...-.+.+...... ...+|..| .... +
T Consensus 1 ~GsGKStvg~~lA~~L~~~fiD~D~~i~~~~--g~si~~i~~~~G~~~fr~~E~~~l~~l~~~-~~~VIa~GGG~~~~~~ 77 (158)
T PF01202_consen 1 MGSGKSTVGKLLAKRLGRPFIDLDDEIEERT--GMSISEIFAEEGEEAFRELESEALRELLKE-NNCVIACGGGIVLKEE 77 (158)
T ss_dssp TTSSHHHHHHHHHHHHTSEEEEHHHHHHHHH--TSHHHHHHHHHHHHHHHHHHHHHHHHHHCS-SSEEEEE-TTGGGSHH
T ss_pred CCCcHHHHHHHHHHHhCCCccccCHHHHHHh--CCcHHHHHHcCChHHHHHHHHHHHHHHhcc-CcEEEeCCCCCcCcHH
Confidence 7999999999999999999999999984322 11111 111222222222222221 23455444 3333 3
Q ss_pred HHhhcCCCcEEEEEecCHHHHHHHHhccc
Q 022951 153 ILEGVTDIDLVINLKLREEALLAKCLGRR 181 (289)
Q Consensus 153 ~l~~~~~~d~vI~Ld~~~e~l~~Rl~~R~ 181 (289)
..+.+.....+|||+++.+.+.+|+..+.
T Consensus 78 ~~~~L~~~g~vI~L~~~~~~l~~Rl~~~~ 106 (158)
T PF01202_consen 78 NRELLKENGLVIYLDADPEELAERLRARD 106 (158)
T ss_dssp HHHHHHHHSEEEEEE--HHHHHHHHHHHC
T ss_pred HHHHHHhCCEEEEEeCCHHHHHHHHhCCC
Confidence 33333345789999999999999998764
No 91
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=99.23 E-value=8.1e-11 Score=99.32 Aligned_cols=51 Identities=20% Similarity=0.236 Sum_probs=37.9
Q ss_pred cccCCCcHHHHHHHHHHHHHhchHHHHHHHHcCcEEEEeCCCCcccHHHHHHHHhccC
Q 022951 222 ITRSDDKEEVVRERLRIYNEKSRPVEEFYRRRGKLLEFDLPGGIPESWPKLLQALNLE 279 (289)
Q Consensus 222 ~~r~~d~~~~~~~rl~~y~~~~~~l~~~y~~~~~l~~id~~~~~~ev~~~i~~~l~~~ 279 (289)
..|.+|+++.+++||..++..+..... ..++.|| .+++..+.+|..++..+
T Consensus 133 ~~Rgtds~e~I~~Rl~~a~~Ei~~~~~-----fdyvivN--dd~e~a~~~l~~ii~ae 183 (191)
T COG0194 133 KGRGTDSEEVIARRLENAKKEISHADE-----FDYVIVN--DDLEKALEELKSIILAE 183 (191)
T ss_pred HccCCCCHHHHHHHHHHHHHHHHHHHh-----CCEEEEC--ccHHHHHHHHHHHHHHH
Confidence 334578899999999999998655433 2344554 46999999999998876
No 92
>PRK11545 gntK gluconate kinase 1; Provisional
Probab=99.23 E-value=2e-10 Score=96.25 Aligned_cols=150 Identities=15% Similarity=0.172 Sum_probs=92.5
Q ss_pred EcCCCCCHHHHHHHHHHHhCCCeeehHHHHH----HHHHcCCccCHH---HHHHHHHHHHHcccccCCceEEEcCcccH-
Q 022951 80 LGCPGVGKGTYASRLSNLLGVPHIATGDLLD----EIVSQGKLVSDE---IIINLLSKRLEAGEAKGEAGFILDGFPRT- 151 (289)
Q Consensus 80 ~GppGsGKSTlak~La~~lg~~~i~~d~l~~----~~l~~g~~v~~~---~~~~ll~~~l~~~~~~~~~g~Ildg~p~~- 151 (289)
+|++||||||+++.|++.+|..+++.|.+.. ..+..|....++ .+...+...........+..+|+-.+.+.
T Consensus 1 ~G~sGsGKSTla~~la~~l~~~~~~~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viv~s~~~~~ 80 (163)
T PRK11545 1 MGVSGSGKSAVASEVAHQLHAAFLDGDFLHPRRNIEKMASGEPLNDDDRKPWLQALNDAAFAMQRTNKVSLIVCSALKKH 80 (163)
T ss_pred CCCCCCcHHHHHHHHHHHhCCeEEeCccCCchhhhccccCCCCCChhhHHHHHHHHHHHHHHHHHcCCceEEEEecchHH
Confidence 5999999999999999999999999976531 111223333222 12222222221111111234555445554
Q ss_pred --HHHhhcCCCcEEEEEecCHHHHHHHHhcccccccCCCccccccccccCCCCCCCCCCCCCCCCCccccCccccCCCcH
Q 022951 152 --EILEGVTDIDLVINLKLREEALLAKCLGRRICSECGGNYNVACIDIKGENGNPGMYMGPLLPPPHCASKLITRSDDKE 229 (289)
Q Consensus 152 --~~l~~~~~~d~vI~Ld~~~e~l~~Rl~~R~~~~~~g~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~r~~d~~ 229 (289)
+.+.....+-.+|||++|.+++.+|+..|..+ . .+.
T Consensus 81 ~r~~~~~~~~~~~~v~l~a~~~~l~~Rl~~R~~~-----------------------------------------~-a~~ 118 (163)
T PRK11545 81 YRDLLREGNPNLSFIYLKGDFDVIESRLKARKGH-----------------------------------------F-FKT 118 (163)
T ss_pred HHHHHHccCCCEEEEEEECCHHHHHHHHHhccCC-----------------------------------------C-CCH
Confidence 33444444668999999999999999999521 0 134
Q ss_pred HHHHHHHHHHHHhchHHHHHHHHcCcEEEEeCCCCcccHHHHHHHHhcc
Q 022951 230 EVVRERLRIYNEKSRPVEEFYRRRGKLLEFDLPGGIPESWPKLLQALNL 278 (289)
Q Consensus 230 ~~~~~rl~~y~~~~~~l~~~y~~~~~l~~id~~~~~~ev~~~i~~~l~~ 278 (289)
+.+..++..+..... ....++.||+..++++++.++...|..
T Consensus 119 ~vl~~Q~~~~ep~~~-------~e~~~~~id~~~~~~~~~~~~~~~~~~ 160 (163)
T PRK11545 119 QMLVTQFETLQEPGA-------DETDVLVVDIDQPLEGVVASTIEVIKK 160 (163)
T ss_pred HHHHHHHHHcCCCCC-------CCCCEEEEeCCCCHHHHHHHHHHHHHH
Confidence 566665554432110 112478999999999999999988843
No 93
>cd01673 dNK Deoxyribonucleoside kinase (dNK) catalyzes the phosphorylation of deoxyribonucleosides to yield corresponding monophosphates (dNMPs). This family consists of various deoxynucleoside kinases including deoxyribo- cytidine (EC 2.7.1.74), guanosine (EC 2.7.1.113), adenosine (EC 2.7.1.76), and thymidine (EC 2.7.1.21) kinases. They are key enzymes in the salvage of deoxyribonucleosides originating from extra- or intracellular breakdown of DNA.
Probab=99.22 E-value=2.2e-10 Score=98.05 Aligned_cols=106 Identities=25% Similarity=0.285 Sum_probs=62.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCeeehH--------HHHHHHHHcCCccCHHHHHHHHHHHH---Hccc--ccCCce
Q 022951 76 QWVFLGCPGVGKGTYASRLSNLLGVPHIATG--------DLLDEIVSQGKLVSDEIIINLLSKRL---EAGE--AKGEAG 142 (289)
Q Consensus 76 ~Ivl~GppGsGKSTlak~La~~lg~~~i~~d--------~l~~~~l~~g~~v~~~~~~~ll~~~l---~~~~--~~~~~g 142 (289)
+|+|.|++||||||+++.|++.+++.++.-. .+++.++.............++..+. .... ...+..
T Consensus 1 ~I~ieG~~GsGKSTl~~~L~~~~~~~~~~Ep~~~~~~~~~~l~~~~~~~~~~~~~~q~~~~~~r~~~~~~~~~~~~~~~~ 80 (193)
T cd01673 1 VIVVEGNIGAGKSTLAKELAEHLGYEVVPEPVEPDVEGNPFLEKFYEDPKRWAFPFQLYFLLSRLKQYKDALEHLSTGQG 80 (193)
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCCccccccccccCCCCCCHHHHHhCHHhccHHHHHHHHHHHHHHHHHHHhhcccCCc
Confidence 4899999999999999999998887655322 12333333211111100001111111 1110 112568
Q ss_pred EEEcCcccH-----------------------HHHhh----cCCCcEEEEEecCHHHHHHHHhccc
Q 022951 143 FILDGFPRT-----------------------EILEG----VTDIDLVINLKLREEALLAKCLGRR 181 (289)
Q Consensus 143 ~Ildg~p~~-----------------------~~l~~----~~~~d~vI~Ld~~~e~l~~Rl~~R~ 181 (289)
+|+|.++.+ +.++. ...||++|||+++++++++|+.+|.
T Consensus 81 vI~DR~~~S~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~~i~l~~~~~~~~~Ri~~R~ 146 (193)
T cd01673 81 VILERSIFSDRVFAEANLKEGGIMKTEYDLYNELFDNLIPELLPPDLVIYLDASPETCLKRIKKRG 146 (193)
T ss_pred eEEEcChhhhHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhcCCCCCEEEEEeCCHHHHHHHHHhcC
Confidence 899986543 01111 2359999999999999999999885
No 94
>PRK14732 coaE dephospho-CoA kinase; Provisional
Probab=99.21 E-value=2.1e-10 Score=99.06 Aligned_cols=145 Identities=17% Similarity=0.134 Sum_probs=90.0
Q ss_pred EEEEcCCCCCHHHHHHHHHHHhCCCeeehHHHHHHHHHcCCcc-------------------CH--------------H-
Q 022951 77 WVFLGCPGVGKGTYASRLSNLLGVPHIATGDLLDEIVSQGKLV-------------------SD--------------E- 122 (289)
Q Consensus 77 Ivl~GppGsGKSTlak~La~~lg~~~i~~d~l~~~~l~~g~~v-------------------~~--------------~- 122 (289)
|.|+|++||||||+++.|++ +|+.+++.|++.++.+..|..+ .. .
T Consensus 2 i~itG~~gsGKst~~~~l~~-~g~~~i~~D~i~~~~~~~~~~~~~~i~~~fG~~i~~~~g~idr~~L~~~vF~~~~~~~~ 80 (196)
T PRK14732 2 IGITGMIGGGKSTALKILEE-LGAFGISADRLAKRYTEPDSPILSELVSLLGPSILDENGKPNRKKISEIVFNDEEKLKA 80 (196)
T ss_pred EEEECCCCccHHHHHHHHHH-CCCEEEecchHHHHHHhcCcHHHHHHHHHhChhhcCCCCccCHHHHHHHHhCCHHHHHH
Confidence 78999999999999999865 7999999999886555433211 00 0
Q ss_pred -------HHHHHHHHHHHcccccCCceEEEcCcccH--HHHhhcCCCcEEEEEecCHHHHHHHHhcccccccCCCccccc
Q 022951 123 -------IIINLLSKRLEAGEAKGEAGFILDGFPRT--EILEGVTDIDLVINLKLREEALLAKCLGRRICSECGGNYNVA 193 (289)
Q Consensus 123 -------~~~~ll~~~l~~~~~~~~~g~Ildg~p~~--~~l~~~~~~d~vI~Ld~~~e~l~~Rl~~R~~~~~~g~~y~~~ 193 (289)
.+...+...+.... . +.-+|+|. |.. ..+.. .+|.+|++++|.+...+|+..|.
T Consensus 81 L~~i~hP~v~~~~~~~~~~~~-~-~~~vi~e~-pLL~E~~~~~--~~D~vi~V~a~~e~r~~RL~~R~------------ 143 (196)
T PRK14732 81 LNELIHPLVRKDFQKILQTTA-E-GKLVIWEV-PLLFETDAYT--LCDATVTVDSDPEESILRTISRD------------ 143 (196)
T ss_pred HHHHhhHHHHHHHHHHHHHHh-c-CCcEEEEe-eeeeEcCchh--hCCEEEEEECCHHHHHHHHHHcC------------
Confidence 01111122221111 1 12344543 322 11111 26999999999999999999884
Q ss_pred cccccCCCCCCCCCCCCCCCCCccccCccccCCCcHHHHHHHHHHHHHhchHHHHHHHHcCcEEEEeCCCCcccHHHHHH
Q 022951 194 CIDIKGENGNPGMYMGPLLPPPHCASKLITRSDDKEEVVRERLRIYNEKSRPVEEFYRRRGKLLEFDLPGGIPESWPKLL 273 (289)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~r~~d~~~~~~~rl~~y~~~~~~l~~~y~~~~~l~~id~~~~~~ev~~~i~ 273 (289)
.-+.+.+..|+.. + + +..+. ..... +.|+++++++++..++.
T Consensus 144 --------------------------------g~s~e~a~~ri~~--Q-~-~~~~k-~~~aD-~vI~N~~~~~~l~~~v~ 185 (196)
T PRK14732 144 --------------------------------GMKKEDVLARIAS--Q-L-PITEK-LKRAD-YIVRNDGNREGLKEECK 185 (196)
T ss_pred --------------------------------CCCHHHHHHHHHH--c-C-CHHHH-HHhCC-EEEECCCCHHHHHHHHH
Confidence 1235667777755 1 1 22222 22233 45778889999999999
Q ss_pred HHhc
Q 022951 274 QALN 277 (289)
Q Consensus 274 ~~l~ 277 (289)
++++
T Consensus 186 ~l~~ 189 (196)
T PRK14732 186 ILYS 189 (196)
T ss_pred HHHH
Confidence 8874
No 95
>PRK14737 gmk guanylate kinase; Provisional
Probab=99.20 E-value=1.9e-10 Score=98.47 Aligned_cols=150 Identities=12% Similarity=0.074 Sum_probs=88.2
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhCCCeeehHHH---------------------HHHHHHcCCccCHHH--------
Q 022951 73 KHVQWVFLGCPGVGKGTYASRLSNLLGVPHIATGDL---------------------LDEIVSQGKLVSDEI-------- 123 (289)
Q Consensus 73 ~~~~Ivl~GppGsGKSTlak~La~~lg~~~i~~d~l---------------------~~~~l~~g~~v~~~~-------- 123 (289)
++++|+|+||+||||||++++|.+.+.-.+++.... ....+..|+.+....
T Consensus 3 ~~~~ivl~GpsG~GK~tl~~~l~~~~~~~~~~v~~TTR~~r~gE~~G~dY~fvs~~~F~~~i~~~~f~e~~~~~g~~YGt 82 (186)
T PRK14737 3 SPKLFIISSVAGGGKSTIIQALLEEHPDFLFSISCTTRAPRPGDEEGKTYFFLTIEEFKKGIADGEFLEWAEVHDNYYGT 82 (186)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhcCCccccccCccCCCCCCCCCCCceeEeCCHHHHHHHHHcCCeEEEEEECCeeecC
Confidence 578899999999999999999998873223322111 123333333321100
Q ss_pred HHHHHHHHHHcccccCCceEEEcCcccH-HHHhhcCCCc--EEEEEecC-HHHHHHHHhcccccccCCCccccccccccC
Q 022951 124 IINLLSKRLEAGEAKGEAGFILDGFPRT-EILEGVTDID--LVINLKLR-EEALLAKCLGRRICSECGGNYNVACIDIKG 199 (289)
Q Consensus 124 ~~~ll~~~l~~~~~~~~~g~Ildg~p~~-~~l~~~~~~d--~vI~Ld~~-~e~l~~Rl~~R~~~~~~g~~y~~~~~~~~~ 199 (289)
-...+...+.. +..+|+|.-+.. ..+.... ++ ++||+.+| .+.+.+|+..|.
T Consensus 83 ~~~~i~~~~~~-----g~~~i~d~~~~g~~~l~~~~-~~~~~~Ifi~pps~e~l~~RL~~R~------------------ 138 (186)
T PRK14737 83 PKAFIEDAFKE-----GRSAIMDIDVQGAKIIKEKF-PERIVTIFIEPPSEEEWEERLIHRG------------------ 138 (186)
T ss_pred cHHHHHHHHHc-----CCeEEEEcCHHHHHHHHHhC-CCCeEEEEEECCCHHHHHHHHHhcC------------------
Confidence 11112222222 346677754433 3444432 33 57888774 588888887774
Q ss_pred CCCCCCCCCCCCCCCCccccCccccCCCcHHHHHHHHHHHHHhchHHHHHHHHcCcEEEEeCCCCcccHHHHHHHHhccC
Q 022951 200 ENGNPGMYMGPLLPPPHCASKLITRSDDKEEVVRERLRIYNEKSRPVEEFYRRRGKLLEFDLPGGIPESWPKLLQALNLE 279 (289)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~L~~r~~d~~~~~~~rl~~y~~~~~~l~~~y~~~~~l~~id~~~~~~ev~~~i~~~l~~~ 279 (289)
+++++.+++|++....+.+ +.....++.+| + ++++...+|.++|...
T Consensus 139 --------------------------~~s~e~i~~Rl~~~~~e~~-----~~~~~D~vI~N-~-dle~a~~ql~~ii~~~ 185 (186)
T PRK14737 139 --------------------------TDSEESIEKRIENGIIELD-----EANEFDYKIIN-D-DLEDAIADLEAIICGK 185 (186)
T ss_pred --------------------------CCCHHHHHHHHHHHHHHHh-----hhccCCEEEEC-c-CHHHHHHHHHHHHhcC
Confidence 3456789999987554322 22223344444 4 8999999999988654
No 96
>PRK05480 uridine/cytidine kinase; Provisional
Probab=99.19 E-value=4e-10 Score=97.85 Aligned_cols=108 Identities=21% Similarity=0.254 Sum_probs=66.4
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHHHhC---CCeeehHHHHHHH-----HHcC-------CccCHHHHHHHHHHHHHccc
Q 022951 72 GKHVQWVFLGCPGVGKGTYASRLSNLLG---VPHIATGDLLDEI-----VSQG-------KLVSDEIIINLLSKRLEAGE 136 (289)
Q Consensus 72 ~~~~~Ivl~GppGsGKSTlak~La~~lg---~~~i~~d~l~~~~-----l~~g-------~~v~~~~~~~ll~~~l~~~~ 136 (289)
.++.+|.|.|++||||||+++.|++.++ +.+++.|+++... .... .....+.+.+.+........
T Consensus 4 ~~~~iI~I~G~sGsGKTTl~~~l~~~l~~~~~~~i~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~ 83 (209)
T PRK05480 4 KKPIIIGIAGGSGSGKTTVASTIYEELGDESIAVIPQDSYYKDQSHLSFEERVKTNYDHPDAFDHDLLIEHLKALKAGKA 83 (209)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhCCCceEEEeCCccccCcccCCHHHhcccCccCcccccHHHHHHHHHHHHcCCc
Confidence 4678999999999999999999999983 4556776664210 0000 11122333333333221100
Q ss_pred -------------------ccCCceEEEcCcccH--HHHhhcCCCcEEEEEecCHHHHHHHHhccc
Q 022951 137 -------------------AKGEAGFILDGFPRT--EILEGVTDIDLVINLKLREEALLAKCLGRR 181 (289)
Q Consensus 137 -------------------~~~~~g~Ildg~p~~--~~l~~~~~~d~vI~Ld~~~e~l~~Rl~~R~ 181 (289)
......+|+||.... ..+..+ .|++||+++|.++.++|...|.
T Consensus 84 v~~p~~d~~~~~~~~~~~~~~~~~~vivEg~~l~~~~~~~~~--~d~~I~v~~~~~~~~~R~~~Rd 147 (209)
T PRK05480 84 IEIPVYDYTEHTRSKETIRVEPKDVIILEGILLLEDERLRDL--MDIKIFVDTPLDIRLIRRLKRD 147 (209)
T ss_pred cccCcccccccccCCCeEEeCCCCEEEEEeehhcCchhHhhh--hceeEEEeCChhHHHHHHHhhc
Confidence 011235788884332 222222 6999999999999999998885
No 97
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=99.17 E-value=5.8e-10 Score=95.91 Aligned_cols=30 Identities=33% Similarity=0.410 Sum_probs=27.6
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHHHhCCCee
Q 022951 74 HVQWVFLGCPGVGKGTYASRLSNLLGVPHI 103 (289)
Q Consensus 74 ~~~Ivl~GppGsGKSTlak~La~~lg~~~i 103 (289)
.++|+|.|+.|+||||+|+.||++++..++
T Consensus 4 ~~~IvI~G~IG~GKSTLa~~La~~l~~~~~ 33 (216)
T COG1428 4 AMVIVIEGMIGAGKSTLAQALAEHLGFKVF 33 (216)
T ss_pred ccEEEEecccccCHHHHHHHHHHHhCCcee
Confidence 578999999999999999999999997665
No 98
>PRK03333 coaE dephospho-CoA kinase/protein folding accessory domain-containing protein; Provisional
Probab=99.16 E-value=4.4e-10 Score=106.97 Aligned_cols=101 Identities=22% Similarity=0.298 Sum_probs=65.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhCCCeeehHHHHHHHHHcCCc-------------------cCHHH------------
Q 022951 75 VQWVFLGCPGVGKGTYASRLSNLLGVPHIATGDLLDEIVSQGKL-------------------VSDEI------------ 123 (289)
Q Consensus 75 ~~Ivl~GppGsGKSTlak~La~~lg~~~i~~d~l~~~~l~~g~~-------------------v~~~~------------ 123 (289)
++|.|+|++||||||+++.|++ +|+++|+.|.+.++++..+.. +....
T Consensus 2 ~~IgltG~igsGKStv~~~L~~-~G~~vidaD~i~~~l~~~~~~~~~~i~~~fG~~il~~~G~idr~~L~~~vF~~~~~~ 80 (395)
T PRK03333 2 LRIGLTGGIGAGKSTVAARLAE-LGAVVVDADVLAREVVEPGTEGLAALVAAFGDDILLADGALDRPALAAKAFADDEAR 80 (395)
T ss_pred eEEEEECCCCCCHHHHHHHHHH-CCCeEEehHHHHHHHhcCChHHHHHHHHHhChHhcCCCCcCCHHHHHHHHhCCHHHH
Confidence 4689999999999999999987 899999999998665544321 11100
Q ss_pred ----------HHHHHHHHHHcccccCCceEEEcCcccH-H-HHhhcCCCcEEEEEecCHHHHHHHHhccc
Q 022951 124 ----------IINLLSKRLEAGEAKGEAGFILDGFPRT-E-ILEGVTDIDLVINLKLREEALLAKCLGRR 181 (289)
Q Consensus 124 ----------~~~ll~~~l~~~~~~~~~g~Ildg~p~~-~-~l~~~~~~d~vI~Ld~~~e~l~~Rl~~R~ 181 (289)
+...+.+.+... . +..+|+.+.|.. + .+.. .+|.+||+++|.+.+++|+..|+
T Consensus 81 ~~le~i~hP~I~~~i~~~i~~~--~-~~~vvv~eipLL~E~~~~~--~~D~iI~V~ap~e~ri~Rl~~rR 145 (395)
T PRK03333 81 AVLNGIVHPLVGARRAELIAAA--P-EDAVVVEDIPLLVESGMAP--LFHLVVVVDADVEVRVRRLVEQR 145 (395)
T ss_pred HHHHHhhhHHHHHHHHHHHHhc--C-CCCEEEEEeeeeecCCchh--hCCEEEEEECCHHHHHHHHHhcC
Confidence 111111112111 1 235666554433 1 1111 26999999999999999998753
No 99
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=99.16 E-value=2.8e-09 Score=92.15 Aligned_cols=109 Identities=13% Similarity=0.175 Sum_probs=67.1
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhCCCeeehHHHHHHHHHcCC---------------ccCHHHHHHH----------
Q 022951 73 KHVQWVFLGCPGVGKGTYASRLSNLLGVPHIATGDLLDEIVSQGK---------------LVSDEIIINL---------- 127 (289)
Q Consensus 73 ~~~~Ivl~GppGsGKSTlak~La~~lg~~~i~~d~l~~~~l~~g~---------------~v~~~~~~~l---------- 127 (289)
.+++|+|+|+|||||||+|+.|++.+|+.++..+|++++.+.... .++++....+
T Consensus 2 ~~~~i~i~G~~G~GKst~a~~l~~~~~~~~~~~~D~~r~~~r~~~~~~p~l~~s~~~a~~~~~~~~~~~~~~~y~~q~~~ 81 (197)
T PRK12339 2 ESTIHFIGGIPGVGKTSISGYIARHRAIDIVLSGDYLREFLRPYVDDEPVLAKSVYDAWEFYGSMTDENIVKGYLDQARA 81 (197)
T ss_pred CceEEEEECCCCCCHHHHHHHHHHhcCCeEEehhHHHHHHHHHhcCCCCCcccccHHHHHHcCCcchhHHHHHHHHHHHH
Confidence 357899999999999999999999999999888888866654211 1221111111
Q ss_pred ----HHHHHHcccccCCceEEEcCcccH-HHHhhcC-CCcEEEEEec-CHHHHHHHHhcccc
Q 022951 128 ----LSKRLEAGEAKGEAGFILDGFPRT-EILEGVT-DIDLVINLKL-REEALLAKCLGRRI 182 (289)
Q Consensus 128 ----l~~~l~~~~~~~~~g~Ildg~p~~-~~l~~~~-~~d~vI~Ld~-~~e~l~~Rl~~R~~ 182 (289)
+...+..... .+..+|+||.... ..++... ....++++.+ +++.+.+|+..|..
T Consensus 82 v~~~L~~va~~~l~-~G~sVIvEgv~l~p~~~~~~~~~~v~~i~l~v~d~e~lr~Rl~~R~~ 142 (197)
T PRK12339 82 IMPGINRVIRRALL-NGEDLVIESLYFHPPMIDENRTNNIRAFYLYIRDAELHRSRLADRIN 142 (197)
T ss_pred HHHHHHHHHHHHHH-cCCCEEEEecCcCHHHHHHHHhcCeEEEEEEeCCHHHHHHHHHHHhh
Confidence 1111111111 1568999983333 3222111 1235666665 67888899998863
No 100
>cd02022 DPCK Dephospho-coenzyme A kinase (DPCK, EC 2.7.1.24) catalyzes the phosphorylation of dephosphocoenzyme A (dCoA) to yield CoA, which is the final step in CoA biosynthesis.
Probab=99.15 E-value=3.6e-10 Score=96.05 Aligned_cols=101 Identities=27% Similarity=0.286 Sum_probs=64.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCeeehHHHHHHHHHcCC-------------------ccCH---------------
Q 022951 76 QWVFLGCPGVGKGTYASRLSNLLGVPHIATGDLLDEIVSQGK-------------------LVSD--------------- 121 (289)
Q Consensus 76 ~Ivl~GppGsGKSTlak~La~~lg~~~i~~d~l~~~~l~~g~-------------------~v~~--------------- 121 (289)
+|.|+|++||||||+++.|++ +|+++++.|++.++.+..+. .+..
T Consensus 1 ii~itG~~gsGKst~~~~l~~-~g~~~i~~D~~~~~~~~~~~~~~~~i~~~fg~~~~~~~g~idr~~L~~~vf~~~~~~~ 79 (179)
T cd02022 1 IIGLTGGIGSGKSTVAKLLKE-LGIPVIDADKIAHEVYEPGGPALQAIVEAFGPDILLEDGELDRKKLGEIVFADPEKRK 79 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHH-CCCCEEecCHHHHhhhhcccHHHHHHHHHcCcceeCCCCcCCHHHHHHHHhCCHHHHH
Confidence 478999999999999999998 99999999999865544322 1111
Q ss_pred ---HHHHHHHHHH----HHcccccCCceEEEcCcccH-HHHhhcCCCcEEEEEecCHHHHHHHHhccc
Q 022951 122 ---EIIINLLSKR----LEAGEAKGEAGFILDGFPRT-EILEGVTDIDLVINLKLREEALLAKCLGRR 181 (289)
Q Consensus 122 ---~~~~~ll~~~----l~~~~~~~~~g~Ildg~p~~-~~l~~~~~~d~vI~Ld~~~e~l~~Rl~~R~ 181 (289)
.++...+... +..... ..-+|+|+-... ..+.. .+|.+|++++|.+...+|+..|.
T Consensus 80 ~l~~i~hp~i~~~~~~~~~~~~~--~~~vive~plL~e~~~~~--~~D~vv~V~a~~~~ri~Rl~~Rd 143 (179)
T cd02022 80 KLEAITHPLIRKEIEEQLAEARK--EKVVVLDIPLLFETGLEK--LVDRVIVVDAPPEIQIERLMKRD 143 (179)
T ss_pred HHHHHHHHHHHHHHHHHHHHccC--CCEEEEEehHhhcCCcHH--hCCeEEEEECCHHHHHHHHHHcC
Confidence 1111111111 111111 134566652211 11222 26999999999999999999884
No 101
>PRK00300 gmk guanylate kinase; Provisional
Probab=99.14 E-value=2.4e-09 Score=92.47 Aligned_cols=151 Identities=18% Similarity=0.197 Sum_probs=87.7
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhCCCeeehH---------------------HHHHHHHHcCCccCH-----HH---
Q 022951 73 KHVQWVFLGCPGVGKGTYASRLSNLLGVPHIATG---------------------DLLDEIVSQGKLVSD-----EI--- 123 (289)
Q Consensus 73 ~~~~Ivl~GppGsGKSTlak~La~~lg~~~i~~d---------------------~l~~~~l~~g~~v~~-----~~--- 123 (289)
+..+|+|+||+||||||+++.|+..++..++... +-+...+..+..+.. ..
T Consensus 4 ~g~~i~i~G~sGsGKstl~~~l~~~~~~~~~~~~~~tr~p~~ge~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~ 83 (205)
T PRK00300 4 RGLLIVLSGPSGAGKSTLVKALLERDPNLQLSVSATTRAPRPGEVDGVDYFFVSKEEFEEMIENGEFLEWAEVFGNYYGT 83 (205)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCccceeccCccccCCCCCCcCCCeeEEcCHHHHHHHHHcCCcEEEEEECCccccC
Confidence 4568999999999999999999998752222211 111122222221110 00
Q ss_pred HHHHHHHHHHcccccCCceEEEcCcccH--HHHhhcCCCcEEEEEecCHHHHHHHHhcccccccCCCccccccccccCCC
Q 022951 124 IINLLSKRLEAGEAKGEAGFILDGFPRT--EILEGVTDIDLVINLKLREEALLAKCLGRRICSECGGNYNVACIDIKGEN 201 (289)
Q Consensus 124 ~~~ll~~~l~~~~~~~~~g~Ildg~p~~--~~l~~~~~~d~vI~Ld~~~e~l~~Rl~~R~~~~~~g~~y~~~~~~~~~~~ 201 (289)
....+...+.. +..+|+|.-+.. ...+.+..+-.++++.++.+.+.+|+..|.
T Consensus 84 ~~~~i~~~l~~-----g~~vi~dl~~~g~~~l~~~~~~~~~I~i~~~s~~~l~~Rl~~R~-------------------- 138 (205)
T PRK00300 84 PRSPVEEALAA-----GKDVLLEIDWQGARQVKKKMPDAVSIFILPPSLEELERRLRGRG-------------------- 138 (205)
T ss_pred cHHHHHHHHHc-----CCeEEEeCCHHHHHHHHHhCCCcEEEEEECcCHHHHHHHHHhcC--------------------
Confidence 01112222222 335666653333 223333222234444667888888888774
Q ss_pred CCCCCCCCCCCCCCccccCccccCCCcHHHHHHHHHHHHHhchHHHHHHHHcCcEEEEeCCCCcccHHHHHHHHhccC
Q 022951 202 GNPGMYMGPLLPPPHCASKLITRSDDKEEVVRERLRIYNEKSRPVEEFYRRRGKLLEFDLPGGIPESWPKLLQALNLE 279 (289)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~L~~r~~d~~~~~~~rl~~y~~~~~~l~~~y~~~~~l~~id~~~~~~ev~~~i~~~l~~~ 279 (289)
++..+.+++|++.+...... +...+ ++.+| .++++++.+|..++..+
T Consensus 139 ------------------------~~~~~~i~~rl~~~~~~~~~----~~~~d-~vi~n--~~~e~~~~~l~~il~~~ 185 (205)
T PRK00300 139 ------------------------TDSEEVIARRLAKAREEIAH----ASEYD-YVIVN--DDLDTALEELKAIIRAE 185 (205)
T ss_pred ------------------------CCCHHHHHHHHHHHHHHHHh----HHhCC-EEEEC--CCHHHHHHHHHHHHHHH
Confidence 35578899999998876433 33333 44443 47999999999999886
No 102
>PRK06547 hypothetical protein; Provisional
Probab=99.11 E-value=5.5e-10 Score=94.51 Aligned_cols=107 Identities=18% Similarity=0.164 Sum_probs=67.4
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHHHHhCCCeeehHHHHHHHHHcCCccCH--HHHHHHHHHHHHc--------------
Q 022951 71 EGKHVQWVFLGCPGVGKGTYASRLSNLLGVPHIATGDLLDEIVSQGKLVSD--EIIINLLSKRLEA-------------- 134 (289)
Q Consensus 71 ~~~~~~Ivl~GppGsGKSTlak~La~~lg~~~i~~d~l~~~~l~~g~~v~~--~~~~~ll~~~l~~-------------- 134 (289)
...+++|+|.|++||||||+++.|++.++..+++.|+++... ...+. +.+...+...-..
T Consensus 12 ~~~~~~i~i~G~~GsGKTt~a~~l~~~~~~~~~~~d~~~~~~----~~~~~~~~~l~~~~l~~g~~~~~~yd~~~~~~~~ 87 (172)
T PRK06547 12 GGGMITVLIDGRSGSGKTTLAGALAARTGFQLVHLDDLYPGW----HGLAAASEHVAEAVLDEGRPGRWRWDWANNRPGD 87 (172)
T ss_pred cCCCEEEEEECCCCCCHHHHHHHHHHHhCCCeecccceeccc----ccCChHHHHHHHHHHhCCCCceecCCCCCCCCCC
Confidence 456789999999999999999999999999999998876221 11111 1111111110000
Q ss_pred -ccccCCceEEEcCcccH-HHHhhcC---CCcEEEEEecCHHHHHHHHhccc
Q 022951 135 -GEAKGEAGFILDGFPRT-EILEGVT---DIDLVINLKLREEALLAKCLGRR 181 (289)
Q Consensus 135 -~~~~~~~g~Ildg~p~~-~~l~~~~---~~d~vI~Ld~~~e~l~~Rl~~R~ 181 (289)
........+|++|.... ..+..+. ...++|||++|.+++++|+..|.
T Consensus 88 ~~~l~~~~vVIvEG~~al~~~~r~~~d~~g~v~~I~ld~~~~vr~~R~~~Rd 139 (172)
T PRK06547 88 WVSVEPGRRLIIEGVGSLTAANVALASLLGEVLTVWLDGPEALRKERALARD 139 (172)
T ss_pred cEEeCCCCeEEEEehhhccHHHHHHhccCCCEEEEEEECCHHHHHHHHHhcC
Confidence 00011346888984222 2222221 12289999999999999999995
No 103
>PF01121 CoaE: Dephospho-CoA kinase; InterPro: IPR001977 This family contains dephospho-CoA kinases (2.7.1.24 from EC), which catalyzes the final step in CoA biosynthesis, the phosphorylation of the 3'-hydroxyl group of ribose using ATP as a phosphate donor. The crystal structures of a number of the proteins in this entry have been determined, including the structure of the protein from Haemophilus influenzae to 2.0-A resolution in a comlex with ATP. The protein consists of three domains: the nucleotide-binding domain with a five-stranded parallel beta-sheet, the substrate-binding alpha-helical domain, and the lid domain formed by a pair of alpha-helices; the overall topology of the protein resembles the structures of other nucleotide kinases [].; GO: 0004140 dephospho-CoA kinase activity, 0005524 ATP binding, 0015937 coenzyme A biosynthetic process; PDB: 1VHL_A 1N3B_A 1VIY_A 1VHT_B 1T3H_B 1UF9_C 2F6R_A 2GRJ_D 2IF2_C 1JJV_A.
Probab=99.09 E-value=7.4e-10 Score=94.35 Aligned_cols=102 Identities=23% Similarity=0.259 Sum_probs=63.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhCCCeeehHHHHHHHHHcCC-------------------ccCHH-------------
Q 022951 75 VQWVFLGCPGVGKGTYASRLSNLLGVPHIATGDLLDEIVSQGK-------------------LVSDE------------- 122 (289)
Q Consensus 75 ~~Ivl~GppGsGKSTlak~La~~lg~~~i~~d~l~~~~l~~g~-------------------~v~~~------------- 122 (289)
|+|.|+|..||||||+++.|++ +|+++++.|++.++.+..+. .+...
T Consensus 1 ~iIglTG~igsGKStv~~~l~~-~G~~vidaD~i~~~l~~~~~~~~~~l~~~FG~~il~~~g~idR~~L~~~vF~d~~~~ 79 (180)
T PF01121_consen 1 MIIGLTGGIGSGKSTVSKILAE-LGFPVIDADEIAHELYEPGSEGYKALKERFGEEILDEDGEIDRKKLAEIVFSDPEKL 79 (180)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH-TT-EEEEHHHHHHHCTSCTCHHHHHHHHHHGGGGBETTSSB-HHHHHHHHTTSHHHH
T ss_pred CEEEEECCCcCCHHHHHHHHHH-CCCCEECccHHHHHHhhcCHHHHHHHHHHcCccccCCCCCChHHHHHHHHhcCHHHH
Confidence 6899999999999999999988 99999999999844333222 11111
Q ss_pred ---------HHHHHHHHHHHcccccCCceEEEcCcccH-HHHhhcCCCcEEEEEecCHHHHHHHHhccc
Q 022951 123 ---------IIINLLSKRLEAGEAKGEAGFILDGFPRT-EILEGVTDIDLVINLKLREEALLAKCLGRR 181 (289)
Q Consensus 123 ---------~~~~ll~~~l~~~~~~~~~g~Ildg~p~~-~~l~~~~~~d~vI~Ld~~~e~l~~Rl~~R~ 181 (289)
.+...+...+..... ...+|+|.-... ..+.. .+|.+|++.+|.+...+|+..|.
T Consensus 80 ~~L~~iihP~I~~~~~~~~~~~~~--~~~~v~e~pLL~E~~~~~--~~D~vi~V~a~~e~ri~Rl~~R~ 144 (180)
T PF01121_consen 80 KKLENIIHPLIREEIEKFIKRNKS--EKVVVVEIPLLFESGLEK--LCDEVIVVYAPEEIRIKRLMERD 144 (180)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCHS--TSEEEEE-TTTTTTTGGG--GSSEEEEEE--HHHHHHHHHHHH
T ss_pred HHHHHHHhHHHHHHHHHHHHhccC--CCEEEEEcchhhhhhHhh--hhceEEEEECCHHHHHHHHHhhC
Confidence 112222222322221 146666651111 12222 27999999999999999999884
No 104
>PRK13951 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional
Probab=99.08 E-value=1.3e-09 Score=106.15 Aligned_cols=100 Identities=19% Similarity=0.219 Sum_probs=62.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhCCCeeehHHHHHHHH---------HcCCccCHHHHHHHHHHHHHcccccCCceEEE
Q 022951 75 VQWVFLGCPGVGKGTYASRLSNLLGVPHIATGDLLDEIV---------SQGKLVSDEIIINLLSKRLEAGEAKGEAGFIL 145 (289)
Q Consensus 75 ~~Ivl~GppGsGKSTlak~La~~lg~~~i~~d~l~~~~l---------~~g~~v~~~~~~~ll~~~l~~~~~~~~~g~Il 145 (289)
|.|+|+|+|||||||+++.|++++|++++++|+++++.. ..|+....+...+.+++.... ...+|-
T Consensus 1 m~I~l~G~~GsGKSTv~~~La~~lg~~~id~D~~i~~~~g~~i~~i~~~~Ge~~fr~~E~~~l~~l~~~-----~~~Vis 75 (488)
T PRK13951 1 MRIFLVGMMGSGKSTIGKRVSEVLDLQFIDMDEEIERREGRSVRRIFEEDGEEYFRLKEKELLRELVER-----DNVVVA 75 (488)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcCCeEEECcHHHHHHcCCCHHHHHHHhhhHHHHHHHHHHHHHHhhc-----CCEEEE
Confidence 579999999999999999999999999999999984421 112211112222222222111 112332
Q ss_pred cC--cccH-HHHhhcCCCcEEEEEecCHHHHHHHHhcc
Q 022951 146 DG--FPRT-EILEGVTDIDLVINLKLREEALLAKCLGR 180 (289)
Q Consensus 146 dg--~p~~-~~l~~~~~~d~vI~Ld~~~e~l~~Rl~~R 180 (289)
.| .... +..+.+. ...+|||+++.+.+.+|+..+
T Consensus 76 ~Gggvv~~~~~r~~l~-~~~vI~L~as~e~l~~Rl~~~ 112 (488)
T PRK13951 76 TGGGVVIDPENRELLK-KEKTLFLYAPPEVLMERVTTE 112 (488)
T ss_pred CCCccccChHHHHHHh-cCeEEEEECCHHHHHHHhccC
Confidence 33 1111 2222222 256999999999999999754
No 105
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=99.06 E-value=2.4e-09 Score=90.48 Aligned_cols=147 Identities=17% Similarity=0.158 Sum_probs=85.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhCCCeeehH---------------------HHHHHHHHcCCccCHH--------HHH
Q 022951 75 VQWVFLGCPGVGKGTYASRLSNLLGVPHIATG---------------------DLLDEIVSQGKLVSDE--------III 125 (289)
Q Consensus 75 ~~Ivl~GppGsGKSTlak~La~~lg~~~i~~d---------------------~l~~~~l~~g~~v~~~--------~~~ 125 (289)
.+|+|+||+||||||+++.|++.++..++... +.+...+..+..+... ...
T Consensus 2 ~ii~l~G~~GsGKsTl~~~L~~~~~~~~~~~~~~tr~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~ 81 (180)
T TIGR03263 2 LLIVISGPSGVGKSTLVKALLEEDPNLKFSISATTRKPRPGEVDGVDYFFVSKEEFEEMIAAGEFLEWAEVHGNYYGTPK 81 (180)
T ss_pred cEEEEECCCCCCHHHHHHHHHccCccccccccceeeCCCCCCcCCcEEEEecHHHHHHHHHcCCcEEEEEECCeeeCCcH
Confidence 47899999999999999999997654333221 1112222333322110 012
Q ss_pred HHHHHHHHcccccCCceEEEcCcccH-H-HHhhcCCCcEEEEEecCHHHHHHHHhcccccccCCCccccccccccCCCCC
Q 022951 126 NLLSKRLEAGEAKGEAGFILDGFPRT-E-ILEGVTDIDLVINLKLREEALLAKCLGRRICSECGGNYNVACIDIKGENGN 203 (289)
Q Consensus 126 ~ll~~~l~~~~~~~~~g~Ildg~p~~-~-~l~~~~~~d~vI~Ld~~~e~l~~Rl~~R~~~~~~g~~y~~~~~~~~~~~~~ 203 (289)
..+...+.. +..+|+|.-+.. . ..+.+..+..++++..+.+.+.+|+..|.
T Consensus 82 ~~i~~~~~~-----g~~vi~d~~~~~~~~~~~~~~~~~~i~~~~~~~e~~~~Rl~~r~---------------------- 134 (180)
T TIGR03263 82 SPVEEALAA-----GKDVLLEIDVQGARQVKKKFPDAVSIFILPPSLEELERRLRKRG---------------------- 134 (180)
T ss_pred HHHHHHHHC-----CCeEEEECCHHHHHHHHHhCCCcEEEEEECCCHHHHHHHHHHcC----------------------
Confidence 223333332 346777763333 2 33333333455555777889999998774
Q ss_pred CCCCCCCCCCCCccccCccccCCCcHHHHHHHHHHHHHhchHHHHHHHHcCcEEEEeCCCCcccHHHHHHHHhc
Q 022951 204 PGMYMGPLLPPPHCASKLITRSDDKEEVVRERLRIYNEKSRPVEEFYRRRGKLLEFDLPGGIPESWPKLLQALN 277 (289)
Q Consensus 204 ~~~~~~~~~~~~~~~~~L~~r~~d~~~~~~~rl~~y~~~~~~l~~~y~~~~~l~~id~~~~~~ev~~~i~~~l~ 277 (289)
++..+.+++|+..+...... .+...++.+| + ++++.+++|.+++.
T Consensus 135 ----------------------~~~~~~i~~rl~~~~~~~~~-----~~~~d~~i~n-~-~~~~~~~~l~~~~~ 179 (180)
T TIGR03263 135 ----------------------TDSEEVIERRLAKAKKEIAH-----ADEFDYVIVN-D-DLEKAVEELKSIIL 179 (180)
T ss_pred ----------------------CCCHHHHHHHHHHHHHHHhc-----cccCcEEEEC-C-CHHHHHHHHHHHHh
Confidence 34567899999887654321 1223344444 3 78999999998874
No 106
>TIGR00017 cmk cytidylate kinase. This family consists of cytidylate kinase, which catalyzes the phosphorylation of cytidine 5-monophosphate (dCMP) to cytidine 5 -diphosphate (dCDP) in the presence of ATP or GTP. UMP and dCMP can also act as acceptors.
Probab=99.04 E-value=1.5e-09 Score=95.15 Aligned_cols=35 Identities=26% Similarity=0.396 Sum_probs=33.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhCCCeeehHHHH
Q 022951 75 VQWVFLGCPGVGKGTYASRLSNLLGVPHIATGDLL 109 (289)
Q Consensus 75 ~~Ivl~GppGsGKSTlak~La~~lg~~~i~~d~l~ 109 (289)
++|.|.||+||||||+++.|++++++.+++.++++
T Consensus 3 ~~i~i~G~~GsGKst~~~~la~~~~~~~~~~g~~~ 37 (217)
T TIGR00017 3 MIIAIDGPSGAGKSTVAKAVAEKLGYAYLDSGAMY 37 (217)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCceeeCchHH
Confidence 68999999999999999999999999999998876
No 107
>PRK13477 bifunctional pantoate ligase/cytidylate kinase; Provisional
Probab=99.03 E-value=4e-09 Score=102.85 Aligned_cols=39 Identities=23% Similarity=0.349 Sum_probs=36.2
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhCCCeeehHHHHHH
Q 022951 73 KHVQWVFLGCPGVGKGTYASRLSNLLGVPHIATGDLLDE 111 (289)
Q Consensus 73 ~~~~Ivl~GppGsGKSTlak~La~~lg~~~i~~d~l~~~ 111 (289)
++++|.|.||+||||||+|+.|+++||+.+++.|.+++.
T Consensus 283 ~~~ii~i~G~sgsGKst~a~~la~~l~~~~~d~g~~YR~ 321 (512)
T PRK13477 283 RQPIIAIDGPAGAGKSTVTRAVAKKLGLLYLDTGAMYRA 321 (512)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHcCCeEecCCceehH
Confidence 568999999999999999999999999999999998854
No 108
>PRK00023 cmk cytidylate kinase; Provisional
Probab=99.02 E-value=5.2e-09 Score=92.30 Aligned_cols=36 Identities=33% Similarity=0.452 Sum_probs=33.9
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHHHhCCCeeehHHHH
Q 022951 74 HVQWVFLGCPGVGKGTYASRLSNLLGVPHIATGDLL 109 (289)
Q Consensus 74 ~~~Ivl~GppGsGKSTlak~La~~lg~~~i~~d~l~ 109 (289)
.++|.|.|++||||||+++.|+++||+.+++.+.++
T Consensus 4 ~~~i~i~g~~gsGksti~~~la~~~~~~~~~~~~~~ 39 (225)
T PRK00023 4 AIVIAIDGPAGSGKGTVAKILAKKLGFHYLDTGAMY 39 (225)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhCCCcccCchhH
Confidence 478999999999999999999999999999999976
No 109
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=99.00 E-value=8.7e-09 Score=89.49 Aligned_cols=109 Identities=20% Similarity=0.268 Sum_probs=66.9
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHHHHhC---CCeeehHHHHHH-----HHHcCC-------ccCHHHHHHHHHHHHHcc
Q 022951 71 EGKHVQWVFLGCPGVGKGTYASRLSNLLG---VPHIATGDLLDE-----IVSQGK-------LVSDEIIINLLSKRLEAG 135 (289)
Q Consensus 71 ~~~~~~Ivl~GppGsGKSTlak~La~~lg---~~~i~~d~l~~~-----~l~~g~-------~v~~~~~~~ll~~~l~~~ 135 (289)
+++..+|.|.|++||||||+++.|+..++ ..+++.|+.+.. ...... ....+.+.+.+.......
T Consensus 3 ~~~g~vi~I~G~sGsGKSTl~~~l~~~l~~~~~~~i~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~g~ 82 (207)
T TIGR00235 3 KPKGIIIGIGGGSGSGKTTVARKIYEQLGKLEIVIISQDNYYKDQSHLEMAERKKTNFDHPDAFDNDLLYEHLKNLKNGS 82 (207)
T ss_pred CCCeEEEEEECCCCCCHHHHHHHHHHHhcccCCeEecccccccChhhCCHHHhcCCCCCCccHhHHHHHHHHHHHHHCCC
Confidence 45668899999999999999999999875 456666665411 011111 111222233332221110
Q ss_pred -------------------cccCCceEEEcCcccH--HHHhhcCCCcEEEEEecCHHHHHHHHhccc
Q 022951 136 -------------------EAKGEAGFILDGFPRT--EILEGVTDIDLVINLKLREEALLAKCLGRR 181 (289)
Q Consensus 136 -------------------~~~~~~g~Ildg~p~~--~~l~~~~~~d~vI~Ld~~~e~l~~Rl~~R~ 181 (289)
......-||+||++.. +.+.. ..|++||++++.+..+.|+..|.
T Consensus 83 ~v~~p~yd~~~~~~~~~~~~~~~~~~vIieG~~~~~~~~~~~--~~d~~I~v~~~~~~~l~R~~~R~ 147 (207)
T TIGR00235 83 PIDVPVYDYVNHTRPKETVHIEPKDVVILEGIMPLFDERLRD--LMDLKIFVDTPLDIRLIRRIERD 147 (207)
T ss_pred CEecccceeecCCCCCceEEeCCCCEEEEEehhhhchHhHHH--hCCEEEEEECChhHHHHHHHHHH
Confidence 0001346888986553 32333 26899999999999999998885
No 110
>PRK12338 hypothetical protein; Provisional
Probab=99.00 E-value=1.4e-08 Score=93.43 Aligned_cols=108 Identities=20% Similarity=0.290 Sum_probs=66.8
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhCCCeeehHHHHHHHHHcC--C-ccCH-------H--------------------
Q 022951 73 KHVQWVFLGCPGVGKGTYASRLSNLLGVPHIATGDLLDEIVSQG--K-LVSD-------E-------------------- 122 (289)
Q Consensus 73 ~~~~Ivl~GppGsGKSTlak~La~~lg~~~i~~d~l~~~~l~~g--~-~v~~-------~-------------------- 122 (289)
++.+|+|+|+|||||||+|+.||+.+|+.++..+|.+++.+... . ..|. .
T Consensus 3 ~p~ii~i~G~sGsGKST~a~~la~~l~~~~~~~tD~~r~~~~~~~~~~~~P~l~~ssy~a~~~l~~~~~~~~~~~~i~~g 82 (319)
T PRK12338 3 KPYVILIGSASGIGKSTIASELARTLNIKHLIETDFIREVVRGIIGKEYAPALHKSSYNAYTALRDKENFKNNEELICAG 82 (319)
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHCCCeEEccChHHHHHHcCCCCcccCchhhcccHHHHhhcCCcccccchHHHHHHH
Confidence 46789999999999999999999999999986667775544321 1 1110 0
Q ss_pred ------HHHHHHHHHHHcccccCCceEEEcCcccH-HHHhhc----CCCcEEEEEecCHHHHHHHHhccc
Q 022951 123 ------IIINLLSKRLEAGEAKGEAGFILDGFPRT-EILEGV----TDIDLVINLKLREEALLAKCLGRR 181 (289)
Q Consensus 123 ------~~~~ll~~~l~~~~~~~~~g~Ildg~p~~-~~l~~~----~~~d~vI~Ld~~~e~l~~Rl~~R~ 181 (289)
.+...+...+... ...+..+|++|.... .++... ..+-.+++|..+.+...+|+..|.
T Consensus 83 f~~q~~~V~~~i~~vi~r~-~~~g~svIiEGvhl~P~~i~~~~~~~~~~v~~~vl~~dee~h~~Rf~~R~ 151 (319)
T PRK12338 83 FEEHASFVIPAIEKVIERA-VTDSDDIVIEGVHLVPGLIDIEQFEENASIHFFILSADEEVHKERFVKRA 151 (319)
T ss_pred HHHHHHHHHHHHHHHHHHH-hcCCCeEEEEeccccHHHHhhhhhcccCceEEEEEECCHHHHHHHHHHhh
Confidence 1111111122211 122568999995444 232211 113345666689999999999885
No 111
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=98.99 E-value=2.2e-09 Score=93.22 Aligned_cols=108 Identities=24% Similarity=0.292 Sum_probs=69.7
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHHHhCCC---eeehHHHHHHH-----HHcCC-------ccCHHHHHHHHHHHHHccc
Q 022951 72 GKHVQWVFLGCPGVGKGTYASRLSNLLGVP---HIATGDLLDEI-----VSQGK-------LVSDEIIINLLSKRLEAGE 136 (289)
Q Consensus 72 ~~~~~Ivl~GppGsGKSTlak~La~~lg~~---~i~~d~l~~~~-----l~~g~-------~v~~~~~~~ll~~~l~~~~ 136 (289)
.+..+|.|.|++||||||+|+.|.+.++.. .|+.|++++.. ..++. ....+++.+-|........
T Consensus 6 ~~~iiIgIaG~SgSGKTTva~~l~~~~~~~~~~~I~~D~YYk~~~~~~~~~~~~~n~d~p~A~D~dLl~~~L~~L~~g~~ 85 (218)
T COG0572 6 EKVIIIGIAGGSGSGKTTVAKELSEQLGVEKVVVISLDDYYKDQSHLPFEERNKINYDHPEAFDLDLLIEHLKDLKQGKP 85 (218)
T ss_pred CceEEEEEeCCCCCCHHHHHHHHHHHhCcCcceEeeccccccchhhcCHhhcCCcCccChhhhcHHHHHHHHHHHHcCCc
Confidence 356889999999999999999999999855 67777777211 00111 1112233333332222110
Q ss_pred -------------------ccCCceEEEcCcccH--HHHhhcCCCcEEEEEecCHHHHHHHHhccc
Q 022951 137 -------------------AKGEAGFILDGFPRT--EILEGVTDIDLVINLKLREEALLAKCLGRR 181 (289)
Q Consensus 137 -------------------~~~~~g~Ildg~p~~--~~l~~~~~~d~vI~Ld~~~e~l~~Rl~~R~ 181 (289)
....+-+|++|+.-. +.+..+ .|+-||+|+|.+.++.|...|.
T Consensus 86 v~~P~yd~~~~~r~~~~i~~~p~~VVIvEGi~~l~d~~lr~~--~d~kIfvdtd~D~RliRri~RD 149 (218)
T COG0572 86 VDLPVYDYKTHTREPETIKVEPNDVVIVEGILLLYDERLRDL--MDLKIFVDTDADVRLIRRIKRD 149 (218)
T ss_pred ccccccchhcccccCCccccCCCcEEEEecccccccHHHHhh--cCEEEEEeCCccHHHHHHHHHH
Confidence 012457899995444 455554 4999999999999998888774
No 112
>PRK00889 adenylylsulfate kinase; Provisional
Probab=98.98 E-value=3.2e-09 Score=89.58 Aligned_cols=103 Identities=19% Similarity=0.124 Sum_probs=61.6
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhC-----CCeeehHHHHHHHHHcCCccCHHH---HHHHHHHHHHcccccCCceEE
Q 022951 73 KHVQWVFLGCPGVGKGTYASRLSNLLG-----VPHIATGDLLDEIVSQGKLVSDEI---IINLLSKRLEAGEAKGEAGFI 144 (289)
Q Consensus 73 ~~~~Ivl~GppGsGKSTlak~La~~lg-----~~~i~~d~l~~~~l~~g~~v~~~~---~~~ll~~~l~~~~~~~~~g~I 144 (289)
++.+|+|+|+|||||||+++.|+..+. +.+++.|.+.+ .+..+.....+. ....+.. +.......+..+|
T Consensus 3 ~g~~i~~~G~~GsGKST~a~~la~~l~~~g~~v~~id~D~~~~-~~~~~~~~~~~~r~~~~~~~~~-~a~~~~~~g~~vi 80 (175)
T PRK00889 3 RGVTVWFTGLSGAGKTTIARALAEKLREAGYPVEVLDGDAVRT-NLSKGLGFSKEDRDTNIRRIGF-VANLLTRHGVIVL 80 (175)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEcCccHHH-HHhcCCCCChhhHHHHHHHHHH-HHHHHHhCCCEEE
Confidence 456899999999999999999999872 56788876653 333332221111 1111111 1110011134667
Q ss_pred EcCc-ccH---HHHhhcCCCcEEEEEecCHHHHHHHH
Q 022951 145 LDGF-PRT---EILEGVTDIDLVINLKLREEALLAKC 177 (289)
Q Consensus 145 ldg~-p~~---~~l~~~~~~d~vI~Ld~~~e~l~~Rl 177 (289)
+|+. +.. +.+......-.+|||++|.+.+.+|.
T Consensus 81 ~~~~~~~~~~~~~l~~~~~~~~~v~l~~~~e~~~~R~ 117 (175)
T PRK00889 81 VSAISPYRETREEVRANIGNFLEVFVDAPLEVCEQRD 117 (175)
T ss_pred EecCCCCHHHHHHHHhhcCCeEEEEEcCCHHHHHHhC
Confidence 7763 322 33444444567999999999999984
No 113
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=98.97 E-value=2.7e-09 Score=91.41 Aligned_cols=104 Identities=23% Similarity=0.243 Sum_probs=67.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHh-CCCeeehHHHHHH-----HHHcCC-------ccCHHHHHHHHHHHHHccc------
Q 022951 76 QWVFLGCPGVGKGTYASRLSNLL-GVPHIATGDLLDE-----IVSQGK-------LVSDEIIINLLSKRLEAGE------ 136 (289)
Q Consensus 76 ~Ivl~GppGsGKSTlak~La~~l-g~~~i~~d~l~~~-----~l~~g~-------~v~~~~~~~ll~~~l~~~~------ 136 (289)
+|.|.|+|||||||+|+.|++.+ ++.+++.|+++.. ....+. ...-+.+...+........
T Consensus 1 ii~i~G~sgsGKTtla~~l~~~~~~~~~i~~Ddf~~~~~~~~~~~~~~~~~d~p~a~D~~~l~~~L~~l~~~~~~~~~~~ 80 (187)
T cd02024 1 IVGISGVTNSGKTTLAKLLQRILPNCCVIHQDDFFKPEDEIPVDENGFKQWDVLEALDMEAMMSTLDYWRETGHFPKFLR 80 (187)
T ss_pred CEEEECCCCCCHHHHHHHHHHHcCCCeEEccccccCCcccCChHhhcCCCCCCcccccHHHHHHHHHHHHcCCCccCccc
Confidence 47899999999999999999998 6889999888721 011110 1222333333333222110
Q ss_pred ---------------------------ccCCceEEEcCcccH--HHHhhcCCCcEEEEEecCHHHHHHHHhccc
Q 022951 137 ---------------------------AKGEAGFILDGFPRT--EILEGVTDIDLVINLKLREEALLAKCLGRR 181 (289)
Q Consensus 137 ---------------------------~~~~~g~Ildg~p~~--~~l~~~~~~d~vI~Ld~~~e~l~~Rl~~R~ 181 (289)
.....-+|+||+... ..+..+ .|+.||+++|.+++++|...|.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iViVEG~~l~~~~~l~~l--~D~~Ifvd~~~d~~~~Rr~~R~ 152 (187)
T cd02024 81 SHGNENDPEKEFIEDAQIEETKADLLGAEDLHILIVDGFLLYNYKPLVDL--FDIRYFLRVPYETCKRRREART 152 (187)
T ss_pred CccccccccccccchhhhhhccccccccCCCcEEEEechHhcCCHHHHhh--cCceeEecCCHHHHHHHHHHcC
Confidence 011336888985332 333333 6999999999999999999985
No 114
>PRK11860 bifunctional 3-phosphoshikimate 1-carboxyvinyltransferase/cytidine monophosphate kinase; Provisional
Probab=98.96 E-value=7.6e-09 Score=104.68 Aligned_cols=38 Identities=29% Similarity=0.343 Sum_probs=35.4
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHHHhCCCeeehHHHHHH
Q 022951 74 HVQWVFLGCPGVGKGTYASRLSNLLGVPHIATGDLLDE 111 (289)
Q Consensus 74 ~~~Ivl~GppGsGKSTlak~La~~lg~~~i~~d~l~~~ 111 (289)
.++|.|.||+||||||+++.||++||++|++++.+++.
T Consensus 442 ~~~i~i~g~~~~gks~~~~~l~~~~~~~~~~~~~~~~~ 479 (661)
T PRK11860 442 VPVICIDGPTASGKGTVAARVAEALGYHYLDSGALYRL 479 (661)
T ss_pred cceEEeeCCCCCCHHHHHHHHHHHhCCeEecHHHhhhH
Confidence 56899999999999999999999999999999999854
No 115
>PTZ00301 uridine kinase; Provisional
Probab=98.96 E-value=1.9e-09 Score=94.05 Aligned_cols=107 Identities=13% Similarity=0.164 Sum_probs=64.2
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHHHhC-------CCeeehHHHHHHH--H---HcCC-------ccCHHHHHHHHHHHHHc
Q 022951 74 HVQWVFLGCPGVGKGTYASRLSNLLG-------VPHIATGDLLDEI--V---SQGK-------LVSDEIIINLLSKRLEA 134 (289)
Q Consensus 74 ~~~Ivl~GppGsGKSTlak~La~~lg-------~~~i~~d~l~~~~--l---~~g~-------~v~~~~~~~ll~~~l~~ 134 (289)
.++|.|.|+|||||||+|+.|++++. ...+..|++++.. + ..+. .+.-+.+.+.+......
T Consensus 3 ~~iIgIaG~SgSGKTTla~~l~~~l~~~~~~~~~~vi~~D~yy~~~~~~~~~~~~~~~~d~p~a~D~~~l~~~l~~L~~g 82 (210)
T PTZ00301 3 CTVIGISGASGSGKSSLSTNIVSELMAHCGPVSIGVICEDFYYRDQSNIPESERAYTNYDHPKSLEHDLLTTHLRELKSG 82 (210)
T ss_pred CEEEEEECCCcCCHHHHHHHHHHHHHhhcCCCeEEEeCCCCCccCcccCCHHHhcCCCCCChhhhCHHHHHHHHHHHHcC
Confidence 37889999999999999999988762 2355666665210 0 1111 11123334444222211
Q ss_pred cc-------------------ccCCceEEEcCcccH--HHHhhcCCCcEEEEEecCHHHHHHHHhcccc
Q 022951 135 GE-------------------AKGEAGFILDGFPRT--EILEGVTDIDLVINLKLREEALLAKCLGRRI 182 (289)
Q Consensus 135 ~~-------------------~~~~~g~Ildg~p~~--~~l~~~~~~d~vI~Ld~~~e~l~~Rl~~R~~ 182 (289)
.. ....+-+|++|+... ..+..+ .|+.||+++|.++++.|...|..
T Consensus 83 ~~i~~P~yd~~~~~~~~~~~~i~p~~ViIvEGi~~l~~~~l~~l--~D~~ifvd~~~d~~~~Rr~~Rd~ 149 (210)
T PTZ00301 83 KTVQIPQYDYVHHTRSDTAVTMTPKSVLIVEGILLFTNAELRNE--MDCLIFVDTPLDICLIRRAKRDM 149 (210)
T ss_pred CcccCCCcccccCCcCCceEEeCCCcEEEEechhhhCCHHHHHh--CCEEEEEeCChhHHHHHHHhhhH
Confidence 00 011345677884332 334333 59999999999999999998864
No 116
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=98.95 E-value=8.4e-10 Score=87.42 Aligned_cols=104 Identities=26% Similarity=0.218 Sum_probs=56.1
Q ss_pred EEEEcCCCCCHHHHHHHHHHHhCCCeeehHHHH-------HH-HHHcCCccCHHHHHHHHHHHHHccc-ccCCceEEEcC
Q 022951 77 WVFLGCPGVGKGTYASRLSNLLGVPHIATGDLL-------DE-IVSQGKLVSDEIIINLLSKRLEAGE-AKGEAGFILDG 147 (289)
Q Consensus 77 Ivl~GppGsGKSTlak~La~~lg~~~i~~d~l~-------~~-~l~~g~~v~~~~~~~ll~~~l~~~~-~~~~~g~Ildg 147 (289)
|+|.|+|||||||+|+.|++.++..+++..... .. ..........+....++........ ......+|+|+
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iid~ 80 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERLGDIIRDIAPEEDIVDSIDDNPDWKENKRLDMEFQDELLDSIIQAIRRMNKGRNIIIDG 80 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHCHHHHHHHHHTTSHSSHCCHHCCCCCCCSCHHHHHHHHHHHHHHHHHHTTTSCEEEEE
T ss_pred CEEECCCCCCHHHHHHHHHHHHCcHHHHHHHhcCCcccccccchhhhhhhhhhhhHHHHHHHHHHhhcccccCCcEEEec
Confidence 789999999999999999999822222110000 00 0011223333333333332222111 11145789998
Q ss_pred cccHHHHhhcCCCcEE-EEEecCHHHHHHHHhcccc
Q 022951 148 FPRTEILEGVTDIDLV-INLKLREEALLAKCLGRRI 182 (289)
Q Consensus 148 ~p~~~~l~~~~~~d~v-I~Ld~~~e~l~~Rl~~R~~ 182 (289)
.......... .... |+|+||++++.+|+..|..
T Consensus 81 ~~~~~~~~~~--~~~~~i~L~~~~e~~~~R~~~R~~ 114 (129)
T PF13238_consen 81 ILSNLELERL--FDIKFIFLDCSPEELRKRLKKRGR 114 (129)
T ss_dssp SSEEECETTE--EEESSEEEE--HHHHHHHHHCTTT
T ss_pred ccchhccccc--ceeeEEEEECCHHHHHHHHHhCCC
Confidence 6544001111 1223 9999999999999999863
No 117
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=98.94 E-value=1e-08 Score=87.86 Aligned_cols=103 Identities=21% Similarity=0.283 Sum_probs=58.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhC-----CCeeehHHHHHHHH-HcCCccCHHHHHHHH----HHHHHcccccCCceEE
Q 022951 75 VQWVFLGCPGVGKGTYASRLSNLLG-----VPHIATGDLLDEIV-SQGKLVSDEIIINLL----SKRLEAGEAKGEAGFI 144 (289)
Q Consensus 75 ~~Ivl~GppGsGKSTlak~La~~lg-----~~~i~~d~l~~~~l-~~g~~v~~~~~~~ll----~~~l~~~~~~~~~g~I 144 (289)
+.|+++|+|||||||+|+.|++.+. ..|+..|-+. -+. +..-.+..+...+.. ...+... .+ +.-||
T Consensus 2 pLiIlTGyPgsGKTtfakeLak~L~~~i~~vi~l~kdy~~-~i~~DEslpi~ke~yres~~ks~~rlldSa-lk-n~~VI 78 (261)
T COG4088 2 PLIILTGYPGSGKTTFAKELAKELRQEIWRVIHLEKDYLR-GILWDESLPILKEVYRESFLKSVERLLDSA-LK-NYLVI 78 (261)
T ss_pred ceEEEecCCCCCchHHHHHHHHHHHHhhhhccccchhhhh-heecccccchHHHHHHHHHHHHHHHHHHHH-hc-ceEEE
Confidence 6789999999999999999999882 3444332222 110 011111122222221 1111111 11 34678
Q ss_pred EcC--cccH--HH----HhhcCCCcEEEEEecCHHHHHHHHhcc
Q 022951 145 LDG--FPRT--EI----LEGVTDIDLVINLKLREEALLAKCLGR 180 (289)
Q Consensus 145 ldg--~p~~--~~----l~~~~~~d~vI~Ld~~~e~l~~Rl~~R 180 (289)
+|. |... .+ ...+..+..+||+.+|.+++++|-..|
T Consensus 79 vDdtNYyksmRrqL~ceak~~~tt~ciIyl~~plDtc~rrN~er 122 (261)
T COG4088 79 VDDTNYYKSMRRQLACEAKERKTTWCIIYLRTPLDTCLRRNRER 122 (261)
T ss_pred EecccHHHHHHHHHHHHHHhcCCceEEEEEccCHHHHHHhhccC
Confidence 886 4333 11 223345778999999999999887555
No 118
>COG2019 AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism]
Probab=98.92 E-value=1.5e-07 Score=78.15 Aligned_cols=104 Identities=26% Similarity=0.278 Sum_probs=66.6
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHHHh-CCCeeehHHHHHHHHH-cCC--------ccCHHHHHHHHHHHHHcccccCCceE
Q 022951 74 HVQWVFLGCPGVGKGTYASRLSNLL-GVPHIATGDLLDEIVS-QGK--------LVSDEIIINLLSKRLEAGEAKGEAGF 143 (289)
Q Consensus 74 ~~~Ivl~GppGsGKSTlak~La~~l-g~~~i~~d~l~~~~l~-~g~--------~v~~~~~~~ll~~~l~~~~~~~~~g~ 143 (289)
+++++++|-||+||||+++.+.+.+ +..+++.++++-+... .|. .+|.+....+...+......- ...+
T Consensus 4 ~kvvvitGVpGvGKTTVl~~~~~~l~~~~ivNyG~~Mle~A~k~glve~rD~~Rklp~e~Q~~lq~~Aa~rI~~~-~~~i 82 (189)
T COG2019 4 RKVVVITGVPGVGKTTVLKIALKELVKHKIVNYGDLMLEIAKKKGLVEHRDEMRKLPLENQRELQAEAAKRIAEM-ALEI 82 (189)
T ss_pred ceEEEEEcCCCCChHHHHHHHHHHHhhceeeeHhHHHHHHHHHhCCcccHHHHhcCCHHHHHHHHHHHHHHHHHh-hhce
Confidence 6889999999999999999999998 8888999998832221 111 234444333333332221111 1127
Q ss_pred EEcCc-----cc-----H--HHHhhcCCCcEEEEEecCHHHHHHHHhc
Q 022951 144 ILDGF-----PR-----T--EILEGVTDIDLVINLKLREEALLAKCLG 179 (289)
Q Consensus 144 Ildg~-----p~-----~--~~l~~~~~~d~vI~Ld~~~e~l~~Rl~~ 179 (289)
|+|+- |. . +.++. .+||.++.|..+++.++.|-.+
T Consensus 83 ivDtH~~IkTP~GylpgLP~~Vl~~-l~pd~ivllEaDp~~Il~RR~~ 129 (189)
T COG2019 83 IVDTHATIKTPAGYLPGLPSWVLEE-LNPDVIVLLEADPEEILERRLR 129 (189)
T ss_pred EEeccceecCCCccCCCCcHHHHHh-cCCCEEEEEeCCHHHHHHHHhc
Confidence 77741 11 1 34444 3699999999999988877543
No 119
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=98.91 E-value=1.3e-08 Score=103.90 Aligned_cols=37 Identities=27% Similarity=0.430 Sum_probs=33.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhCCCeeehHHHHHH
Q 022951 75 VQWVFLGCPGVGKGTYASRLSNLLGVPHIATGDLLDE 111 (289)
Q Consensus 75 ~~Ivl~GppGsGKSTlak~La~~lg~~~i~~d~l~~~ 111 (289)
++|.|.|||||||||+|+.||+++|+.|++++.+++.
T Consensus 2 ~~i~I~G~~GsGKST~ak~la~~l~~~~~~~g~~~r~ 38 (712)
T PRK09518 2 IIVAIDGPAGVGKSSVSRALAQYLGYAYLDTGAMYRA 38 (712)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCcEeecCcEeHH
Confidence 4789999999999999999999999999999888743
No 120
>COG0645 Predicted kinase [General function prediction only]
Probab=98.90 E-value=5e-08 Score=81.24 Aligned_cols=106 Identities=24% Similarity=0.295 Sum_probs=71.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhCCCeeehHHHHHHHHH--------cCCccCH---HHHHHHHHHHHHcccccCCceE
Q 022951 75 VQWVFLGCPGVGKGTYASRLSNLLGVPHIATGDLLDEIVS--------QGKLVSD---EIIINLLSKRLEAGEAKGEAGF 143 (289)
Q Consensus 75 ~~Ivl~GppGsGKSTlak~La~~lg~~~i~~d~l~~~~l~--------~g~~v~~---~~~~~ll~~~l~~~~~~~~~g~ 143 (289)
..+++.|.||+||||+|+.|++.+|..+|..|.+.+.+.. .|-+.+. ..+..++.....-.. .+..+
T Consensus 2 ~l~l~~Gl~GsGKstlA~~l~~~lgA~~lrsD~irk~L~g~p~~~r~~~g~ys~~~~~~vy~~l~~~A~l~l~--~G~~V 79 (170)
T COG0645 2 RLVLVGGLPGSGKSTLARGLAELLGAIRLRSDVIRKRLFGVPEETRGPAGLYSPAATAAVYDELLGRAELLLS--SGHSV 79 (170)
T ss_pred eEEEEecCCCccHhHHHHHHHhhcCceEEehHHHHHHhcCCcccccCCCCCCcHHHHHHHHHHHHHHHHHHHh--CCCcE
Confidence 5688999999999999999999999999999888866533 1111111 112222221111111 15689
Q ss_pred EEcC-cccH---HHH----hhcCCCcEEEEEecCHHHHHHHHhcccc
Q 022951 144 ILDG-FPRT---EIL----EGVTDIDLVINLKLREEALLAKCLGRRI 182 (289)
Q Consensus 144 Ildg-~p~~---~~l----~~~~~~d~vI~Ld~~~e~l~~Rl~~R~~ 182 (289)
|+|+ |-+. +.+ +...-+-..|+++++.+++.+|+..|.-
T Consensus 80 VlDa~~~r~~~R~~~~~~A~~~gv~~~li~~~ap~~v~~~rl~aR~~ 126 (170)
T COG0645 80 VLDATFDRPQERALARALARDVGVAFVLIRLEAPEEVLRGRLAARKG 126 (170)
T ss_pred EEecccCCHHHHHHHHHHHhccCCceEEEEcCCcHHHHHHHHHHhCC
Confidence 9998 6555 222 2222345679999999999999999973
No 121
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=98.90 E-value=2.4e-08 Score=84.96 Aligned_cols=26 Identities=35% Similarity=0.433 Sum_probs=23.3
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHHHhC
Q 022951 74 HVQWVFLGCPGVGKGTYASRLSNLLG 99 (289)
Q Consensus 74 ~~~Ivl~GppGsGKSTlak~La~~lg 99 (289)
+..|+|+||+||||+|++++|.+.+.
T Consensus 2 ~r~ivl~Gpsg~GK~~l~~~L~~~~~ 27 (183)
T PF00625_consen 2 RRPIVLVGPSGSGKSTLAKRLIQEFP 27 (183)
T ss_dssp SSEEEEESSTTSSHHHHHHHHHHHST
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcc
Confidence 45789999999999999999999874
No 122
>TIGR00455 apsK adenylylsulfate kinase (apsK). Important residue (active site in E.coli) is residue 100 of the seed alignment.
Probab=98.90 E-value=2.1e-08 Score=85.38 Aligned_cols=103 Identities=16% Similarity=0.098 Sum_probs=63.1
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHHHh---C--CCeeehHHHHHHHHHcCCccCHHHHHH---HHHHHHHcccccCCceE
Q 022951 72 GKHVQWVFLGCPGVGKGTYASRLSNLL---G--VPHIATGDLLDEIVSQGKLVSDEIIIN---LLSKRLEAGEAKGEAGF 143 (289)
Q Consensus 72 ~~~~~Ivl~GppGsGKSTlak~La~~l---g--~~~i~~d~l~~~~l~~g~~v~~~~~~~---ll~~~l~~~~~~~~~g~ 143 (289)
.++.+|+|+|+|||||||+++.|+..+ | ..+++.|.+.+. +..+....++.... .+........ ..+..+
T Consensus 16 ~~~~~i~i~G~~GsGKstla~~l~~~l~~~~~~~~~l~~d~~r~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~G~~V 93 (184)
T TIGR00455 16 HRGVVIWLTGLSGSGKSTIANALEKKLESKGYRVYVLDGDNVRHG-LNKDLGFSEEDRKENIRRIGEVAKLFV-RNGIIV 93 (184)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECChHHHhh-hccccCCCHHHHHHHHHHHHHHHHHHH-cCCCEE
Confidence 356899999999999999999999987 2 456777666533 33332233322111 1111111111 115678
Q ss_pred EEcC-cccH---HHHhhcCC--CcEEEEEecCHHHHHHH
Q 022951 144 ILDG-FPRT---EILEGVTD--IDLVINLKLREEALLAK 176 (289)
Q Consensus 144 Ildg-~p~~---~~l~~~~~--~d~vI~Ld~~~e~l~~R 176 (289)
|+|. ++.. +.+..+.. +.++|||++|.+.+.+|
T Consensus 94 I~d~~~~~~~~r~~~~~~~~~~~~~~v~l~~~~e~~~~R 132 (184)
T TIGR00455 94 ITSFISPYRADRQMVRELIEKGEFIEVFVDCPLEVCEQR 132 (184)
T ss_pred EEecCCCCHHHHHHHHHhCcCCCeEEEEEeCCHHHHHHh
Confidence 8887 4444 33333322 35689999999999988
No 123
>PRK05537 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Validated
Probab=98.89 E-value=1.3e-08 Score=100.97 Aligned_cols=103 Identities=17% Similarity=0.047 Sum_probs=63.4
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhCC------CeeehHHHHHHHHHcCCccCHHHHHHHHHHH--HHcccccCCceEE
Q 022951 73 KHVQWVFLGCPGVGKGTYASRLSNLLGV------PHIATGDLLDEIVSQGKLVSDEIIINLLSKR--LEAGEAKGEAGFI 144 (289)
Q Consensus 73 ~~~~Ivl~GppGsGKSTlak~La~~lg~------~~i~~d~l~~~~l~~g~~v~~~~~~~ll~~~--l~~~~~~~~~g~I 144 (289)
++..|+|+|+|||||||+|+.|++.++. .+++.|.+. ..+..+....++......... +.......+.++|
T Consensus 391 ~g~~Ivl~Gl~GSGKSTia~~La~~L~~~~g~~~~~lD~D~vr-~~l~ge~~f~~~er~~~~~~l~~~a~~v~~~Gg~vI 469 (568)
T PRK05537 391 QGFTVFFTGLSGAGKSTIAKALMVKLMEMRGRPVTLLDGDVVR-KHLSSELGFSKEDRDLNILRIGFVASEITKNGGIAI 469 (568)
T ss_pred CCeEEEEECCCCChHHHHHHHHHHHhhhccCceEEEeCCcHHH-HhccCCCCCCHHHHHHHHHHHHHHHHHHHhCCCEEE
Confidence 4568999999999999999999999985 888887664 333333323332221111110 1111111156788
Q ss_pred EcC-cccH-------HHHhhcCCCcEEEEEecCHHHHHHHH
Q 022951 145 LDG-FPRT-------EILEGVTDIDLVINLKLREEALLAKC 177 (289)
Q Consensus 145 ldg-~p~~-------~~l~~~~~~d~vI~Ld~~~e~l~~Rl 177 (289)
+|. +|.. +.+... ..-++|||++|.+.+.+|+
T Consensus 470 ~~~~~p~~~~R~~nr~llk~~-g~fivV~L~~p~e~l~~R~ 509 (568)
T PRK05537 470 CAPIAPYRATRREVREMIEAY-GGFIEVHVATPLEVCEQRD 509 (568)
T ss_pred EEeCCchHHHHHHHHHHHhhc-CCEEEEEEcCCHHHHHHhc
Confidence 885 5544 222221 1125899999999999996
No 124
>PRK05416 glmZ(sRNA)-inactivating NTPase; Provisional
Probab=98.89 E-value=8.2e-08 Score=87.61 Aligned_cols=92 Identities=18% Similarity=0.203 Sum_probs=55.5
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHHHhCCCeeehHHHHHHHHHcCCccCHHHHHHHHHHHHHcccccCCceEEEcCccc---
Q 022951 74 HVQWVFLGCPGVGKGTYASRLSNLLGVPHIATGDLLDEIVSQGKLVSDEIIINLLSKRLEAGEAKGEAGFILDGFPR--- 150 (289)
Q Consensus 74 ~~~Ivl~GppGsGKSTlak~La~~lg~~~i~~d~l~~~~l~~g~~v~~~~~~~ll~~~l~~~~~~~~~g~Ildg~p~--- 150 (289)
+.+|+|+|++||||||+++.|. ..|+.+++. ++...+..++.......... .-.+++|-...
T Consensus 6 ~~~i~i~G~~GsGKtt~~~~l~-~~g~~~~d~-------------~~~~L~~~l~~~~~~~~~~~-~~av~iD~r~~~~~ 70 (288)
T PRK05416 6 MRLVIVTGLSGAGKSVALRALE-DLGYYCVDN-------------LPPSLLPKLVELLAQSGGIR-KVAVVIDVRSRPFF 70 (288)
T ss_pred ceEEEEECCCCCcHHHHHHHHH-HcCCeEECC-------------cCHHHHHHHHHHHHhcCCCC-CeEEEEccCchhhH
Confidence 3578999999999999999996 458777754 12222323332222110111 22567775211
Q ss_pred -H--H---HHhhcCCCcEEEEEecCHHHHHHHHhcc
Q 022951 151 -T--E---ILEGVTDIDLVINLKLREEALLAKCLGR 180 (289)
Q Consensus 151 -~--~---~l~~~~~~d~vI~Ld~~~e~l~~Rl~~R 180 (289)
. + .+........+|||+++.+++.+|+..+
T Consensus 71 ~~~~~~~~~L~~~g~~~~iI~L~a~~e~L~~Rl~~~ 106 (288)
T PRK05416 71 DDLPEALDELRERGIDVRVLFLDASDEVLIRRYSET 106 (288)
T ss_pred HHHHHHHHHHHHcCCcEEEEEEECCHHHHHHHHhhc
Confidence 1 2 2332222346899999999999999753
No 125
>KOG3220 consensus Similar to bacterial dephospho-CoA kinase [Coenzyme transport and metabolism]
Probab=98.88 E-value=7.2e-08 Score=82.23 Aligned_cols=151 Identities=22% Similarity=0.234 Sum_probs=94.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhCCCeeehHHHHHHHHHcCCccCH---------------------------------
Q 022951 75 VQWVFLGCPGVGKGTYASRLSNLLGVPHIATGDLLDEIVSQGKLVSD--------------------------------- 121 (289)
Q Consensus 75 ~~Ivl~GppGsGKSTlak~La~~lg~~~i~~d~l~~~~l~~g~~v~~--------------------------------- 121 (289)
.++.++|..||||||+++.+- ++|++.||.|.+.++.++.|.+...
T Consensus 2 ~iVGLTGgiatGKStVs~~f~-~~G~~vIDaD~vaR~vv~PG~p~~~~ive~FG~eiLl~~G~inR~~LG~~vF~~~~~r 80 (225)
T KOG3220|consen 2 LIVGLTGGIATGKSTVSQVFK-ALGIPVIDADVVAREVVEPGTPAYRRIVEAFGTEILLEDGEINRKVLGKRVFSDPKKR 80 (225)
T ss_pred eEEEeecccccChHHHHHHHH-HcCCcEecHHHHHHHHhcCCChHHHHHHHHhCceeeccCCcccHHHHhHHHhCCHHHH
Confidence 467799999999999999886 8999999999988665554332111
Q ss_pred --------HHHHHHHHHHHHcccccCCceEEEcCcccH-HH-HhhcCCCcEEEEEecCHHHHHHHHhcccccccCCCccc
Q 022951 122 --------EIIINLLSKRLEAGEAKGEAGFILDGFPRT-EI-LEGVTDIDLVINLKLREEALLAKCLGRRICSECGGNYN 191 (289)
Q Consensus 122 --------~~~~~ll~~~l~~~~~~~~~g~Ildg~p~~-~~-l~~~~~~d~vI~Ld~~~e~l~~Rl~~R~~~~~~g~~y~ 191 (289)
..+...+.+.+...-..+.+-+|+|- |.. |. +..+ ...+|.+.||.+.-++|+..|+
T Consensus 81 ~~Ln~IthP~Ir~em~ke~~~~~l~G~r~ivlDi-PLLFE~~~~~~--~~~tvvV~cd~~~Ql~Rl~~Rd---------- 147 (225)
T KOG3220|consen 81 QALNKITHPAIRKEMFKEILKLLLRGYRVIVLDI-PLLFEAKLLKI--CHKTVVVTCDEELQLERLVERD---------- 147 (225)
T ss_pred HHHHhcccHHHHHHHHHHHHHHHhcCCeEEEEec-hHHHHHhHHhh--eeeEEEEEECcHHHHHHHHHhc----------
Confidence 11111111112222222233455553 333 32 3333 4678999999999999999885
Q ss_pred cccccccCCCCCCCCCCCCCCCCCccccCccccCCCcHHHHHHHHHHHHHhchHHHHHHHHcCcEEEEeCCCCcccHHHH
Q 022951 192 VACIDIKGENGNPGMYMGPLLPPPHCASKLITRSDDKEEVVRERLRIYNEKSRPVEEFYRRRGKLLEFDLPGGIPESWPK 271 (289)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~r~~d~~~~~~~rl~~y~~~~~~l~~~y~~~~~l~~id~~~~~~ev~~~ 271 (289)
+.+++..+.|++.-. ++.+..... -+++|++++++++.++
T Consensus 148 ----------------------------------~lse~dAe~Rl~sQm----p~~~k~~~a--~~Vi~Nng~~~~l~~q 187 (225)
T KOG3220|consen 148 ----------------------------------ELSEEDAENRLQSQM----PLEKKCELA--DVVIDNNGSLEDLYEQ 187 (225)
T ss_pred ----------------------------------cccHHHHHHHHHhcC----CHHHHHHhh--heeecCCCChHHHHHH
Confidence 233555666665422 222222222 3678999999999999
Q ss_pred HHHHhccC
Q 022951 272 LLQALNLE 279 (289)
Q Consensus 272 i~~~l~~~ 279 (289)
+..++...
T Consensus 188 v~~v~~~~ 195 (225)
T KOG3220|consen 188 VEKVLALL 195 (225)
T ss_pred HHHHHHHh
Confidence 99887654
No 126
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=98.86 E-value=2.7e-08 Score=85.59 Aligned_cols=104 Identities=19% Similarity=0.210 Sum_probs=61.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHh---CCCeeehHHHHHHH-----HH-------cCCccCHHHHHHHHHHHHHccc----
Q 022951 76 QWVFLGCPGVGKGTYASRLSNLL---GVPHIATGDLLDEI-----VS-------QGKLVSDEIIINLLSKRLEAGE---- 136 (289)
Q Consensus 76 ~Ivl~GppGsGKSTlak~La~~l---g~~~i~~d~l~~~~-----l~-------~g~~v~~~~~~~ll~~~l~~~~---- 136 (289)
+|.|.|++||||||+++.|+..+ +..+++.|++.... .. .......+.+.+.+........
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l~~~~~~v~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~p 80 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQLGNPKVVIISQDSYYKDLSHEELEERKNNNYDHPDAFDFDLLISHLQDLKNGKSVEIP 80 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCCCCeEEEEecccccccccccHHHhccCCCCCCCcccHHHHHHHHHHHHCCCCEecc
Confidence 47899999999999999999987 36778887766211 00 0111222333333332211100
Q ss_pred ---------------ccCCceEEEcCcccH--HHHhhcCCCcEEEEEecCHHHHHHHHhccc
Q 022951 137 ---------------AKGEAGFILDGFPRT--EILEGVTDIDLVINLKLREEALLAKCLGRR 181 (289)
Q Consensus 137 ---------------~~~~~g~Ildg~p~~--~~l~~~~~~d~vI~Ld~~~e~l~~Rl~~R~ 181 (289)
......+|+||.... ..+.. ..|++||+++|.+..++|...|.
T Consensus 81 ~~d~~~~~~~~~~~~i~~~~~vI~eg~~~~~~~~~~~--~~d~~i~v~~~~~~~~~R~~~Rd 140 (198)
T cd02023 81 VYDFKTHSRLKETVTVYPADVIILEGILALYDKELRD--LMDLKIFVDTDADVRLIRRIERD 140 (198)
T ss_pred ccccccCcccCCceecCCCCEEEEechhhccchhHHh--hcCeEEEEECChhHHHHHHHHHH
Confidence 001245677773222 12222 25899999999999888887774
No 127
>PRK07667 uridine kinase; Provisional
Probab=98.86 E-value=3.3e-08 Score=85.08 Aligned_cols=107 Identities=12% Similarity=0.076 Sum_probs=65.8
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHHHhC-----CCeeehHHHHHHHHH---cCCccC-----H----HHHHHHHHHHHHc
Q 022951 72 GKHVQWVFLGCPGVGKGTYASRLSNLLG-----VPHIATGDLLDEIVS---QGKLVS-----D----EIIINLLSKRLEA 134 (289)
Q Consensus 72 ~~~~~Ivl~GppGsGKSTlak~La~~lg-----~~~i~~d~l~~~~l~---~g~~v~-----~----~~~~~ll~~~l~~ 134 (289)
..+.+|.|.|++||||||+|+.|++.++ ...++.|+++..... .+..-. . +.+...+-..+..
T Consensus 15 ~~~~iIgI~G~~gsGKStla~~L~~~l~~~~~~~~~i~~Dd~~~~~~~~~~~~~~~~~~~~~~~~d~~~L~~~v~~~L~~ 94 (193)
T PRK07667 15 ENRFILGIDGLSRSGKTTFVANLKENMKQEGIPFHIFHIDDYIVERNKRYHTGFEEWYEYYYLQWDIEWLRQKFFRKLQN 94 (193)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEEcCcccchhhhHHhcCCCchhhhhhhhhhHHHHHHHHHHhhcC
Confidence 3458899999999999999999999873 457888887733221 121110 0 1111111111211
Q ss_pred cc--------------------ccCCceEEEcCcccH-HHHhhcCCCcEEEEEecCHHHHHHHHhcc
Q 022951 135 GE--------------------AKGEAGFILDGFPRT-EILEGVTDIDLVINLKLREEALLAKCLGR 180 (289)
Q Consensus 135 ~~--------------------~~~~~g~Ildg~p~~-~~l~~~~~~d~vI~Ld~~~e~l~~Rl~~R 180 (289)
.. ......+|+||.... ..+..+ .|.+||+++|.+..++|+..|
T Consensus 95 ~~~i~~P~~d~~~~~~~~~~~~~~~~~vvIvEG~~l~~~~~~~~--~d~~v~V~~~~~~~~~R~~~r 159 (193)
T PRK07667 95 ETKLTLPFYHDETDTCEMKKVQIPIVGVIVIEGVFLQRKEWRDF--FHYMVYLDCPRETRFLRESEE 159 (193)
T ss_pred CCeEEEeeeccccccccccceecCCCCEEEEEehhhhhhhHHhh--ceEEEEEECCHHHHHHHHhcc
Confidence 10 001346778883333 223332 599999999999999999876
No 128
>PRK06696 uridine kinase; Validated
Probab=98.84 E-value=5.6e-09 Score=91.81 Aligned_cols=108 Identities=22% Similarity=0.201 Sum_probs=64.5
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHHHh---CCCe--eehHHHHHHH--H-HcCC---------ccCHHHHHHHHHHHHHc
Q 022951 72 GKHVQWVFLGCPGVGKGTYASRLSNLL---GVPH--IATGDLLDEI--V-SQGK---------LVSDEIIINLLSKRLEA 134 (289)
Q Consensus 72 ~~~~~Ivl~GppGsGKSTlak~La~~l---g~~~--i~~d~l~~~~--l-~~g~---------~v~~~~~~~ll~~~l~~ 134 (289)
.++++|.|.|++||||||+|+.|++.+ |..+ +++|+++... . ..+. .+..+.+...+...+..
T Consensus 20 ~~~~iI~I~G~sgsGKSTlA~~L~~~l~~~g~~v~~~~~Ddf~~~~~~r~~~~~~~~~g~~~~~~d~~~L~~~l~~~l~~ 99 (223)
T PRK06696 20 TRPLRVAIDGITASGKTTFADELAEEIKKRGRPVIRASIDDFHNPRVIRYRRGRESAEGYYEDAYDYTALRRLLLDPLGP 99 (223)
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeccccccCCHHHHHHcCCCChhhcCccccCHHHHHHHHHhhccC
Confidence 367899999999999999999999998 5444 4577777211 0 1111 11112222222111100
Q ss_pred -----------------------ccccCCceEEEcCcccH-HHHhhcCCCcEEEEEecCHHHHHHHHhccc
Q 022951 135 -----------------------GEAKGEAGFILDGFPRT-EILEGVTDIDLVINLKLREEALLAKCLGRR 181 (289)
Q Consensus 135 -----------------------~~~~~~~g~Ildg~p~~-~~l~~~~~~d~vI~Ld~~~e~l~~Rl~~R~ 181 (289)
........+|+||.... ..+..+ .|++||+++|.+.+.+|+..|.
T Consensus 100 ~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~vviveg~~l~~~~~~~~--~d~~i~v~~~~e~~~~R~~~Rd 168 (223)
T PRK06696 100 NGDRQYRTASHDLKTDIPVHNPPLLAAPNAVLIVDGTFLLRPELRDL--WDYKIFLDTDFEVSRRRGAKRD 168 (223)
T ss_pred CCceeEeeeeeccccCcccCCCceecCCCCEEEEecHHHhhhhHHhh--CCEEEEEECCHHHHHHHHHHhh
Confidence 00011235677773222 222222 5899999999999999999885
No 129
>KOG3327 consensus Thymidylate kinase/adenylate kinase [Nucleotide transport and metabolism]
Probab=98.84 E-value=5.6e-08 Score=81.82 Aligned_cols=155 Identities=18% Similarity=0.194 Sum_probs=96.3
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhCCCe------------eehHHHHHHHHHcCCccCHHHHHH-----------HHH
Q 022951 73 KHVQWVFLGCPGVGKGTYASRLSNLLGVPH------------IATGDLLDEIVSQGKLVSDEIIIN-----------LLS 129 (289)
Q Consensus 73 ~~~~Ivl~GppGsGKSTlak~La~~lg~~~------------i~~d~l~~~~l~~g~~v~~~~~~~-----------ll~ 129 (289)
+...|++.|..+|||||++..|.+.+.-.+ .+++.++..|+.+....++..+.- ++.
T Consensus 4 rg~liV~eGlDrsgKstQ~~~l~~~l~~~~~~~~l~~FP~Rst~iGk~i~~YL~k~~dl~d~~iHLlFSAnRwe~~~~i~ 83 (208)
T KOG3327|consen 4 RGALIVLEGLDRSGKSTQCGKLVESLIPGLDPAELLRFPERSTSIGKLIDGYLRKKSDLPDHTIHLLFSANRWEHVSLIK 83 (208)
T ss_pred CccEEeeeccccCCceeehhHHHHHHHhccChHHhhhcchhcccccHHHHHHHHhccCCcHHHHHHHhccchhhHHHHHH
Confidence 456899999999999999999988873211 124455566776666666654322 333
Q ss_pred HHHHcccccCCceEEEcCcccH------------HH---H-hhcCCCcEEEEEecCHHHHHHHHhcccccccCCCccccc
Q 022951 130 KRLEAGEAKGEAGFILDGFPRT------------EI---L-EGVTDIDLVINLKLREEALLAKCLGRRICSECGGNYNVA 193 (289)
Q Consensus 130 ~~l~~~~~~~~~g~Ildg~p~~------------~~---l-~~~~~~d~vI~Ld~~~e~l~~Rl~~R~~~~~~g~~y~~~ 193 (289)
+.+.. +..+|+|.|..+ +. + ..+.+||+++||+++++. ..|..++...
T Consensus 84 e~l~k-----g~~~ivDRY~~SGvAyS~AKgl~~dWc~~pd~gL~KPDlvlfL~v~p~~-~a~rggfG~E---------- 147 (208)
T KOG3327|consen 84 EKLAK-----GTTLIVDRYSFSGVAYSAAKGLDLDWCKQPDVGLPKPDLVLFLDVSPED-AARRGGFGEE---------- 147 (208)
T ss_pred HHHhc-----CCeEEEecceecchhhhhhcCCCcchhhCCccCCCCCCeEEEEeCCHHH-HHHhcCcchh----------
Confidence 33333 346899986655 11 1 123469999999999999 4444444311
Q ss_pred cccccCCCCCCCCCCCCCCCCCccccCccccCCCcHHHHHHHHHHHHHhchHHHHHHHHcCcEEEEeCCCCcccHHHHHH
Q 022951 194 CIDIKGENGNPGMYMGPLLPPPHCASKLITRSDDKEEVVRERLRIYNEKSRPVEEFYRRRGKLLEFDLPGGIPESWPKLL 273 (289)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~r~~d~~~~~~~rl~~y~~~~~~l~~~y~~~~~l~~id~~~~~~ev~~~i~ 273 (289)
| -+ ...++++...+...... .+...++.||+..+++++.++|.
T Consensus 148 ------------------------------r-ye-~v~fqekv~~~~q~l~r-----~e~~~~~~vDAs~sve~V~~~V~ 190 (208)
T KOG3327|consen 148 ------------------------------R-YE-TVAFQEKVLVFFQKLLR-----KEDLNWHVVDASKSVEKVHQQVR 190 (208)
T ss_pred ------------------------------H-HH-HHHHHHHHHHHHHHHHh-----ccCCCeEEEecCccHHHHHHHHH
Confidence 0 11 22334444333332210 12346999999999999999997
Q ss_pred HHhccCC
Q 022951 274 QALNLED 280 (289)
Q Consensus 274 ~~l~~~~ 280 (289)
.+++.-+
T Consensus 191 ~i~e~~~ 197 (208)
T KOG3327|consen 191 SLVENVL 197 (208)
T ss_pred HHHHHhc
Confidence 7766544
No 130
>PRK03846 adenylylsulfate kinase; Provisional
Probab=98.84 E-value=2e-08 Score=86.63 Aligned_cols=103 Identities=17% Similarity=0.115 Sum_probs=59.2
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHHHHh-----CCCeeehHHHHHHHHHcCCccCH---HHHHHHHHHHHHcccccCCce
Q 022951 71 EGKHVQWVFLGCPGVGKGTYASRLSNLL-----GVPHIATGDLLDEIVSQGKLVSD---EIIINLLSKRLEAGEAKGEAG 142 (289)
Q Consensus 71 ~~~~~~Ivl~GppGsGKSTlak~La~~l-----g~~~i~~d~l~~~~l~~g~~v~~---~~~~~ll~~~l~~~~~~~~~g 142 (289)
..++.+|+|+|++||||||+++.|+..+ +..+++.|++.+.+...-...+. +.+..+.. ........ + .
T Consensus 21 ~~~~~~i~i~G~~GsGKSTla~~l~~~l~~~~~~~~~ld~d~~~~~~~~~~~~~~~~~~~~~~~l~~-~a~~~~~~-G-~ 97 (198)
T PRK03846 21 GHKGVVLWFTGLSGSGKSTVAGALEEALHELGVSTYLLDGDNVRHGLCSDLGFSDADRKENIRRVGE-VAKLMVDA-G-L 97 (198)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHHhCCCCEEEEcCEeHHhhhhhcCCcCcccHHHHHHHHHH-HHHHHhhC-C-C
Confidence 3467899999999999999999999986 35667776665333221111221 22222211 11111111 2 3
Q ss_pred EEEcCccc--H---HHHhhc-CCCcE-EEEEecCHHHHHHH
Q 022951 143 FILDGFPR--T---EILEGV-TDIDL-VINLKLREEALLAK 176 (289)
Q Consensus 143 ~Ildg~p~--~---~~l~~~-~~~d~-vI~Ld~~~e~l~~R 176 (289)
+|+..|.. . +.+..+ ....+ +|||++|.+.+.+|
T Consensus 98 ~VI~~~~~~~~~~R~~~r~~l~~~~~i~V~L~~~~e~~~~R 138 (198)
T PRK03846 98 VVLTAFISPHRAERQMVRERLGEGEFIEVFVDTPLAICEAR 138 (198)
T ss_pred EEEEEeCCCCHHHHHHHHHHcccCCEEEEEEcCCHHHHHhc
Confidence 44444443 1 233332 22344 79999999999998
No 131
>TIGR01663 PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase. Note that the EC number for the kinase function is: 2.7.1.78
Probab=98.82 E-value=3.8e-08 Score=96.46 Aligned_cols=96 Identities=13% Similarity=0.145 Sum_probs=70.7
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHHHhCCCeeehHHHHHHHHHcCCccCHHHHHHHHHHHHHcccccCCceEEEcC-ccc
Q 022951 72 GKHVQWVFLGCPGVGKGTYASRLSNLLGVPHIATGDLLDEIVSQGKLVSDEIIINLLSKRLEAGEAKGEAGFILDG-FPR 150 (289)
Q Consensus 72 ~~~~~Ivl~GppGsGKSTlak~La~~lg~~~i~~d~l~~~~l~~g~~v~~~~~~~ll~~~l~~~~~~~~~g~Ildg-~p~ 150 (289)
..+.+|+++|+|||||||+|+.++..+|+.+++.|.+- . ...........+.. +..+|+|. +..
T Consensus 367 ~~p~LVil~G~pGSGKST~A~~l~~~~g~~~vn~D~lg-~---------~~~~~~~a~~~L~~-----G~sVVIDaTn~~ 431 (526)
T TIGR01663 367 APCEMVIAVGFPGAGKSHFCKKFFQPAGYKHVNADTLG-S---------TQNCLTACERALDQ-----GKRCAIDNTNPD 431 (526)
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHcCCeEECcHHHH-H---------HHHHHHHHHHHHhC-----CCcEEEECCCCC
Confidence 45788999999999999999999999999999997762 1 12222334444443 45899998 444
Q ss_pred H-------HHHhhcCCCcEEEEEecCHHHHHHHHhcccc
Q 022951 151 T-------EILEGVTDIDLVINLKLREEALLAKCLGRRI 182 (289)
Q Consensus 151 ~-------~~l~~~~~~d~vI~Ld~~~e~l~~Rl~~R~~ 182 (289)
. +..+...-+-.++|+++|.+++++|+..|..
T Consensus 432 ~~~R~~~i~lAk~~gv~v~~i~~~~p~e~~~~Rn~~R~~ 470 (526)
T TIGR01663 432 AASRAKFLQCARAAGIPCRCFLFNAPLAQAKHNIAFREL 470 (526)
T ss_pred HHHHHHHHHHHHHcCCeEEEEEeCCCHHHHHHHHHhhcc
Confidence 3 2223333466799999999999999998853
No 132
>PLN02772 guanylate kinase
Probab=98.78 E-value=1.1e-07 Score=89.50 Aligned_cols=53 Identities=17% Similarity=0.238 Sum_probs=34.8
Q ss_pred CCCcHHHHHHHHHHHHHhchHHHHHHHHcCcEEEEeCCCCcccHHHHHHHHhccCCc
Q 022951 225 SDDKEEVVRERLRIYNEKSRPVEEFYRRRGKLLEFDLPGGIPESWPKLLQALNLEDP 281 (289)
Q Consensus 225 ~~d~~~~~~~rl~~y~~~~~~l~~~y~~~~~l~~id~~~~~~ev~~~i~~~l~~~~~ 281 (289)
..++++.+++||+.+..+++... +.....++.+| + ++++.+++|.++|..+..
T Consensus 269 GteseE~I~kRL~~A~~Ei~~~~--~~~~fD~vIvN-D-dLe~A~~~L~~iL~~~~~ 321 (398)
T PLN02772 269 GTETEEQIQKRLRNAEAELEQGK--SSGIFDHILYN-D-NLEECYKNLKKLLGLDGL 321 (398)
T ss_pred CCCCHHHHHHHHHHHHHHHhhcc--ccCCCCEEEEC-C-CHHHHHHHHHHHHhhcCc
Confidence 35567899999999866533110 11122344444 3 899999999999987764
No 133
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=98.75 E-value=1.2e-07 Score=78.21 Aligned_cols=102 Identities=18% Similarity=0.039 Sum_probs=59.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHh---C--CCeeehHHHHHHHHHcCCccCHH-H--HHHHHHHHHHcccccCCceEEEcC
Q 022951 76 QWVFLGCPGVGKGTYASRLSNLL---G--VPHIATGDLLDEIVSQGKLVSDE-I--IINLLSKRLEAGEAKGEAGFILDG 147 (289)
Q Consensus 76 ~Ivl~GppGsGKSTlak~La~~l---g--~~~i~~d~l~~~~l~~g~~v~~~-~--~~~ll~~~l~~~~~~~~~g~Ildg 147 (289)
+|+|+|+|||||||+|+.|++.+ + ..+++.|.+.+ .+........+ . ....+.......... +..+|+|.
T Consensus 1 ~i~i~G~~GsGKSTla~~L~~~l~~~g~~~~~i~~d~~r~-~l~~~~~~~~~~~~~~~~~~~~~a~~l~~~-G~~VIid~ 78 (149)
T cd02027 1 VIWLTGLSGSGKSTIARALEEKLFQRGRPVYVLDGDNVRH-GLNKDLGFSREDREENIRRIAEVAKLLADA-GLIVIAAF 78 (149)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEEcCHHHHH-hhhhccCCCcchHHHHHHHHHHHHHHHHhC-CCEEEEcc
Confidence 37899999999999999999998 5 34566665553 23222212111 1 111111111111111 45788886
Q ss_pred -cccH---HHHhhcC--CCcEEEEEecCHHHHHHHHhc
Q 022951 148 -FPRT---EILEGVT--DIDLVINLKLREEALLAKCLG 179 (289)
Q Consensus 148 -~p~~---~~l~~~~--~~d~vI~Ld~~~e~l~~Rl~~ 179 (289)
+... ..+..+. .+..+|||++|.+++.+|-.+
T Consensus 79 ~~~~~~~R~~~~~l~~~~~~~~i~l~~~~e~~~~R~~~ 116 (149)
T cd02027 79 ISPYREDREAARKIIGGGDFLEVFVDTPLEVCEQRDPK 116 (149)
T ss_pred CCCCHHHHHHHHHhcCCCCEEEEEEeCCHHHHHHhCch
Confidence 4333 2233332 356789999999999988543
No 134
>PLN02348 phosphoribulokinase
Probab=98.75 E-value=1.6e-08 Score=95.22 Aligned_cols=107 Identities=21% Similarity=0.331 Sum_probs=66.5
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHHHhCC--------------------CeeehHHHHH---HH-HHcCC------ccCH
Q 022951 72 GKHVQWVFLGCPGVGKGTYASRLSNLLGV--------------------PHIATGDLLD---EI-VSQGK------LVSD 121 (289)
Q Consensus 72 ~~~~~Ivl~GppGsGKSTlak~La~~lg~--------------------~~i~~d~l~~---~~-l~~g~------~v~~ 121 (289)
.++.+|.|.|++||||||+++.|++.++. ..|++|+++. +. ...+. ...-
T Consensus 47 ~~p~IIGIaG~SGSGKSTfA~~L~~~Lg~~~~~~~~~~~~~~~l~~~~~~VI~lDDYh~~dr~~r~~~g~t~ldP~a~df 126 (395)
T PLN02348 47 DGTVVIGLAADSGCGKSTFMRRLTSVFGGAAKPPKGGNPDSNTLISDTTTVICLDDYHSLDRTGRKEKGVTALDPRANNF 126 (395)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHhhccCCCccccccccccccCceEEEEcccccCCChhhHhhcCCccCCcccccH
Confidence 46788999999999999999999999863 3678888761 11 11121 1111
Q ss_pred HHHHHHHHHHHHcccc-------------------cCCceEEEcCc-ccH-HHHhhcCCCcEEEEEecCHHHHHHHHhcc
Q 022951 122 EIIINLLSKRLEAGEA-------------------KGEAGFILDGF-PRT-EILEGVTDIDLVINLKLREEALLAKCLGR 180 (289)
Q Consensus 122 ~~~~~ll~~~l~~~~~-------------------~~~~g~Ildg~-p~~-~~l~~~~~~d~vI~Ld~~~e~l~~Rl~~R 180 (289)
+.+.+.+.. +..+.. .....+|++|. +.. +.+..+ .|+.||++++.++.+.|...|
T Consensus 127 Dll~~~L~~-Lk~G~~I~~PiYDh~tg~~~~~e~I~p~~VVIVEGlh~L~~e~lr~l--~D~~IyVd~~~dvrl~RRI~R 203 (395)
T PLN02348 127 DLMYEQVKA-LKEGKAVEKPIYNHVTGLLDPPELIEPPKILVIEGLHPMYDERVRDL--LDFSIYLDISDDVKFAWKIQR 203 (395)
T ss_pred HHHHHHHHH-HHCCCcEEeeccccCCCCcCCcEEcCCCcEEEEechhhccCcccccc--CcEEEEEECCHHHHHHHHHHh
Confidence 223333332 222210 11346788883 322 223222 599999999999998887777
Q ss_pred c
Q 022951 181 R 181 (289)
Q Consensus 181 ~ 181 (289)
.
T Consensus 204 D 204 (395)
T PLN02348 204 D 204 (395)
T ss_pred h
Confidence 5
No 135
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=98.73 E-value=3.1e-08 Score=87.07 Aligned_cols=105 Identities=21% Similarity=0.268 Sum_probs=62.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHhC-------CCeeehHHHHH--H------HHH-cCC--ccCHHHHHHHHHHHHHccc-
Q 022951 76 QWVFLGCPGVGKGTYASRLSNLLG-------VPHIATGDLLD--E------IVS-QGK--LVSDEIIINLLSKRLEAGE- 136 (289)
Q Consensus 76 ~Ivl~GppGsGKSTlak~La~~lg-------~~~i~~d~l~~--~------~l~-~g~--~v~~~~~~~ll~~~l~~~~- 136 (289)
+|.|.|++||||||+|+.|+..+. +.++++|+... . .+. .|- ....+.+...+........
T Consensus 1 IigI~G~sGSGKTTla~~L~~~l~~~~~~~~v~vi~~D~f~~~~~~~~~~~~~~~~g~p~~~d~~~l~~~L~~l~~g~~~ 80 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQALLSRWPDHPNVELITTDGFLYPNKELIERGLMDRKGFPESYDMEALLKFLKDIKSGKKN 80 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHHHHhhcCCCCcEEEEecCcccCcHHHHHHhhhhhcCCCcccCCHHHHHHHHHHHHCCCCc
Confidence 467999999999999999999873 34566776651 1 111 111 1122333444433222110
Q ss_pred --------------------ccCCceEEEcCcccH--H-----HHhhcCCCcEEEEEecCHHHHHHHHhcccc
Q 022951 137 --------------------AKGEAGFILDGFPRT--E-----ILEGVTDIDLVINLKLREEALLAKCLGRRI 182 (289)
Q Consensus 137 --------------------~~~~~g~Ildg~p~~--~-----~l~~~~~~d~vI~Ld~~~e~l~~Rl~~R~~ 182 (289)
....+-+|++|.... + .+..+ .|+.||+++|.+.+.+|+..|..
T Consensus 81 v~~P~yd~~~~~~~~~~~~~~~~~~vvIvEG~~~l~~~~~~~~~l~~~--~D~~ifvd~~~~~~~~rl~~R~~ 151 (220)
T cd02025 81 VKIPVYSHLTYDVIPGEKQTVDQPDILIIEGLNVLQTGQNPRLFVSDF--FDFSIYVDADEDDIEKWYIKRFL 151 (220)
T ss_pred EEccccceeccccCCCCceecCCCCEEEECCchhcCCcccchhhHHHh--CCeEEEEECCHHHHHHHHHHHHH
Confidence 011346788884222 1 13333 59999999999998888877753
No 136
>PRK07429 phosphoribulokinase; Provisional
Probab=98.72 E-value=3.7e-08 Score=91.47 Aligned_cols=107 Identities=26% Similarity=0.352 Sum_probs=66.1
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHHHhC---CCeeehHHHHH---HH-HHcCC--ccCH----HHHHHHHHHHHHcccc-
Q 022951 72 GKHVQWVFLGCPGVGKGTYASRLSNLLG---VPHIATGDLLD---EI-VSQGK--LVSD----EIIINLLSKRLEAGEA- 137 (289)
Q Consensus 72 ~~~~~Ivl~GppGsGKSTlak~La~~lg---~~~i~~d~l~~---~~-l~~g~--~v~~----~~~~~ll~~~l~~~~~- 137 (289)
.++++|.|.|++||||||+++.|++.++ +..+..|++.. .. ...|. ..+. +.+...+. .+..+..
T Consensus 6 ~~~~IIgI~G~SGSGKSTla~~L~~ll~~~~~~vi~~Dd~~~~~~~~r~~~g~~~l~p~~~~~d~l~~~l~-~L~~g~~I 84 (327)
T PRK07429 6 DRPVLLGVAGDSGCGKTTFLRGLADLLGEELVTVICTDDYHSYDRKQRKELGITALDPRANNLDIMYEHLK-ALKTGQPI 84 (327)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHhHhccCceEEEEecccccCCHHHHHhcCCcccCccchHHHHHHHHHH-HHHCCCce
Confidence 4678999999999999999999999987 55677777641 10 01121 1121 12222222 1221110
Q ss_pred ------------------cCCceEEEcCcc-cH-HHHhhcCCCcEEEEEecCHHHHHHHHhccc
Q 022951 138 ------------------KGEAGFILDGFP-RT-EILEGVTDIDLVINLKLREEALLAKCLGRR 181 (289)
Q Consensus 138 ------------------~~~~g~Ildg~p-~~-~~l~~~~~~d~vI~Ld~~~e~l~~Rl~~R~ 181 (289)
.....+|+||.. .. +.+..+ .|+.|||+++.++...|..+|.
T Consensus 85 ~~P~yd~~~g~~~~~~~i~p~~iVIvEG~~~l~~~~lr~~--~D~~I~Vda~~evr~~Rri~Rd 146 (327)
T PRK07429 85 LKPIYNHETGTFDPPEYIEPNKIVVVEGLHPLYDERVREL--YDFKVYLDPPEEVKIAWKIKRD 146 (327)
T ss_pred ecceeecCCCCcCCcEecCCCcEEEEechhhcCcHhHHhh--CCEEEEEECCHHHHHHHHHHHH
Confidence 113468889943 22 333333 5999999999999988777664
No 137
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=98.70 E-value=1.4e-07 Score=85.33 Aligned_cols=103 Identities=22% Similarity=0.219 Sum_probs=56.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHh-----CCCeeehHHHHHHHHHcCCcc---CHHHHHHHHHHHHHcccccCCceEEEc
Q 022951 75 VQWVFLGCPGVGKGTYASRLSNLL-----GVPHIATGDLLDEIVSQGKLV---SDEIIINLLSKRLEAGEAKGEAGFILD 146 (289)
Q Consensus 75 ~~Ivl~GppGsGKSTlak~La~~l-----g~~~i~~d~l~~~~l~~g~~v---~~~~~~~ll~~~l~~~~~~~~~g~Ild 146 (289)
..|+|+|.|||||||+|+.|++.+ .+.+++.+.+. +...... ........+...+...... ...||+|
T Consensus 2 pLiil~G~P~SGKTt~a~~L~~~~~~~~~~v~~i~~~~~~---~~~~~y~~~~~Ek~~R~~l~s~v~r~ls~-~~iVI~D 77 (270)
T PF08433_consen 2 PLIILCGLPCSGKTTRAKELKKYLEEKGKEVVIISDDSLG---IDRNDYADSKKEKEARGSLKSAVERALSK-DTIVILD 77 (270)
T ss_dssp -EEEEE--TTSSHHHHHHHHHHHHHHTT--EEEE-THHHH----TTSSS--GGGHHHHHHHHHHHHHHHHTT--SEEEE-
T ss_pred EEEEEEcCCCCcHHHHHHHHHHHHHhcCCEEEEEcccccc---cchhhhhchhhhHHHHHHHHHHHHHhhcc-CeEEEEe
Confidence 478999999999999999999975 34456654443 2332211 1122233333333332222 4589999
Q ss_pred C--cccH---HH---HhhcCCCcEEEEEecCHHHHHHHHhccc
Q 022951 147 G--FPRT---EI---LEGVTDIDLVINLKLREEALLAKCLGRR 181 (289)
Q Consensus 147 g--~p~~---~~---l~~~~~~d~vI~Ld~~~e~l~~Rl~~R~ 181 (289)
+ |-+. +. .+...-...+||++++.+.+++|=..|.
T Consensus 78 d~nYiKg~RYelyclAr~~~~~~c~i~~~~~~e~~~~~N~~R~ 120 (270)
T PF08433_consen 78 DNNYIKGMRYELYCLARAYGTTFCVIYCDCPLETCLQRNSKRP 120 (270)
T ss_dssp S---SHHHHHHHHHHHHHTT-EEEEEEEE--HHHHHHHHHHTT
T ss_pred CCchHHHHHHHHHHHHHHcCCCEEEEEECCCHHHHHHhhhccC
Confidence 8 4444 22 2233346679999999999999988875
No 138
>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []. It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.
Probab=98.67 E-value=1e-07 Score=82.21 Aligned_cols=107 Identities=18% Similarity=0.254 Sum_probs=61.1
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHHHHh---CCCeeehHHHH------HHHHHcCCccCH--------HHHHHHHHHHHH
Q 022951 71 EGKHVQWVFLGCPGVGKGTYASRLSNLL---GVPHIATGDLL------DEIVSQGKLVSD--------EIIINLLSKRLE 133 (289)
Q Consensus 71 ~~~~~~Ivl~GppGsGKSTlak~La~~l---g~~~i~~d~l~------~~~l~~g~~v~~--------~~~~~ll~~~l~ 133 (289)
..+|..+++.|+|||||||++..+...+ ++.+|+.|++. .++...+..... .+...+++..+.
T Consensus 12 ~~~P~~~i~aG~~GsGKSt~~~~~~~~~~~~~~v~i~~D~~r~~~p~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~a~~ 91 (199)
T PF06414_consen 12 QEKPTLIIIAGQPGSGKSTLARQLLEEFGGGGIVVIDADEFRQFHPDYDELLKADPDEASELTQKEASRLAEKLIEYAIE 91 (199)
T ss_dssp -SS-EEEEEES-TTSTTHHHHHHHHHHT-TT-SEEE-GGGGGGGSTTHHHHHHHHCCCTHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCEEEEEeCCCCCCHHHHHHHhhhhccCCCeEEEehHHHHHhccchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 3578899999999999999999999987 67889988865 121111111111 123333444443
Q ss_pred cccccCCceEEEcCcccH-----HHHhhcC---CCcEEEEEecCHHHHHHHHhcccc
Q 022951 134 AGEAKGEAGFILDGFPRT-----EILEGVT---DIDLVINLKLREEALLAKCLGRRI 182 (289)
Q Consensus 134 ~~~~~~~~g~Ildg~p~~-----~~l~~~~---~~d~vI~Ld~~~e~l~~Rl~~R~~ 182 (289)
. ...+|+|+.... +.++.+. -.-.++++.++++..+.|+..|..
T Consensus 92 ~-----~~nii~E~tl~~~~~~~~~~~~~k~~GY~v~l~~v~~~~e~s~~rv~~R~~ 143 (199)
T PF06414_consen 92 N-----RYNIIFEGTLSNPSKLRKLIREAKAAGYKVELYYVAVPPELSIERVRQRYE 143 (199)
T ss_dssp C-----T--EEEE--TTSSHHHHHHHHHHHCTT-EEEEEEE---HHHHHHHHHHHHH
T ss_pred c-----CCCEEEecCCCChhHHHHHHHHHHcCCceEEEEEEECCHHHHHHHHHHHHH
Confidence 3 348999984333 2333332 245689999999999999998864
No 139
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=98.64 E-value=2.1e-07 Score=79.92 Aligned_cols=104 Identities=26% Similarity=0.373 Sum_probs=61.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHhC---CC------eeehHHHHH-----HHHHcC---------CccCHHHHHHHHHHHH
Q 022951 76 QWVFLGCPGVGKGTYASRLSNLLG---VP------HIATGDLLD-----EIVSQG---------KLVSDEIIINLLSKRL 132 (289)
Q Consensus 76 ~Ivl~GppGsGKSTlak~La~~lg---~~------~i~~d~l~~-----~~l~~g---------~~v~~~~~~~ll~~~l 132 (289)
+|.|+|++||||||+|+.|+..++ .. .++.|.... .....+ ....-+.+.+.+.. +
T Consensus 1 IIgI~G~sgSGKTTla~~L~~~L~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~p~a~d~~~l~~~l~~-L 79 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQILNKRGIPAMEMDIILSLDDFYDDYHLRDRKGRGENRYNFDHPDAFDFDLLKEDLKA-L 79 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHTTCTTTCCCSEEEEEGGGGBHHHHHHHHHHHCTTTSSTTSGGGBSHHHHHHHHHH-H
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCccCcCccceeEEEeecccccccchhhHhhccccccCCCCccccCHHHHHHHHHH-H
Confidence 588999999999999999999996 22 444544331 111111 11222444454443 2
Q ss_pred Hcccc--------------------cCCceEEEcCcc-cH-HHHhhcCCCcEEEEEecCHHHHHHHHhcccc
Q 022951 133 EAGEA--------------------KGEAGFILDGFP-RT-EILEGVTDIDLVINLKLREEALLAKCLGRRI 182 (289)
Q Consensus 133 ~~~~~--------------------~~~~g~Ildg~p-~~-~~l~~~~~~d~vI~Ld~~~e~l~~Rl~~R~~ 182 (289)
..+.. ...+-+|++|.. .. +.+..+ .|+.|||+++.+..+.|...|..
T Consensus 80 ~~g~~i~~p~yd~~~~~~~~~~~~~~~~~ivIvEG~~~l~~~~l~~l--~D~~ifld~~~~~~l~Rri~RD~ 149 (194)
T PF00485_consen 80 KNGGSIEIPIYDFSTGDRDPWIIIISPSDIVIVEGIYALYDEELRDL--FDLKIFLDADEDLRLERRIQRDV 149 (194)
T ss_dssp HTTSCEEEEEEETTTTEEEEEEEEEES-SEEEEEETTTTSSHCHGGG---SEEEEEEE-HHHHHHHHHHHHH
T ss_pred hCCCcccccccccccccceeeeeecCCCCEEEEcccceeeeeeeccc--ceeEEEecccHHHHHHHHhhhhc
Confidence 22111 124567888833 22 334444 59999999999999988887753
No 140
>PRK04220 2-phosphoglycerate kinase; Provisional
Probab=98.64 E-value=1.1e-06 Score=80.28 Aligned_cols=38 Identities=29% Similarity=0.420 Sum_probs=31.9
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHHHhCCCe-eehHHHH
Q 022951 72 GKHVQWVFLGCPGVGKGTYASRLSNLLGVPH-IATGDLL 109 (289)
Q Consensus 72 ~~~~~Ivl~GppGsGKSTlak~La~~lg~~~-i~~d~l~ 109 (289)
..|++|+|.|++||||||+|..||.+||..+ ++.|.+.
T Consensus 90 ~~p~iIlI~G~sgsGKStlA~~La~~l~~~~vi~~D~~r 128 (301)
T PRK04220 90 KEPIIILIGGASGVGTSTIAFELASRLGIRSVIGTDSIR 128 (301)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhCCCEEEechHHH
Confidence 3578999999999999999999999999985 5654443
No 141
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=98.64 E-value=1.5e-07 Score=78.12 Aligned_cols=103 Identities=17% Similarity=0.032 Sum_probs=57.5
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHHh-----CCCeeehHHHHHHHHHcCCccCHHHHHHHHHHH--HHcccccCCceEEE
Q 022951 73 KHVQWVFLGCPGVGKGTYASRLSNLL-----GVPHIATGDLLDEIVSQGKLVSDEIIINLLSKR--LEAGEAKGEAGFIL 145 (289)
Q Consensus 73 ~~~~Ivl~GppGsGKSTlak~La~~l-----g~~~i~~d~l~~~~l~~g~~v~~~~~~~ll~~~--l~~~~~~~~~g~Il 145 (289)
++.+|+|+|.|||||||+|+.|.++| ...+++.|.+. ..+..+-....+...+.+... +...-...+..+|+
T Consensus 1 ~g~vIwltGlsGsGKtTlA~~L~~~L~~~g~~~~~LDgD~lR-~~l~~dl~fs~~dR~e~~rr~~~~A~ll~~~G~ivIv 79 (156)
T PF01583_consen 1 KGFVIWLTGLSGSGKTTLARALERRLFARGIKVYLLDGDNLR-HGLNADLGFSKEDREENIRRIAEVAKLLADQGIIVIV 79 (156)
T ss_dssp S-EEEEEESSTTSSHHHHHHHHHHHHHHTTS-EEEEEHHHHC-TTTTTT--SSHHHHHHHHHHHHHHHHHHHHTTSEEEE
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEecCcchh-hccCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCeEEE
Confidence 46789999999999999999999988 35677886665 223333223332222211111 11111111346666
Q ss_pred cC-cccH---HHHhhcCC--CcEEEEEecCHHHHHHH
Q 022951 146 DG-FPRT---EILEGVTD--IDLVINLKLREEALLAK 176 (289)
Q Consensus 146 dg-~p~~---~~l~~~~~--~d~vI~Ld~~~e~l~~R 176 (289)
.. .|.. +..+.... .-+-||++||.+++.+|
T Consensus 80 a~isp~~~~R~~~R~~~~~~~f~eVyv~~~~e~~~~R 116 (156)
T PF01583_consen 80 AFISPYREDREWARELIPNERFIEVYVDCPLEVCRKR 116 (156)
T ss_dssp E----SHHHHHHHHHHHHTTEEEEEEEES-HHHHHHH
T ss_pred eeccCchHHHHHHHHhCCcCceEEEEeCCCHHHHHHh
Confidence 65 3333 33333322 35789999999999998
No 142
>PRK12337 2-phosphoglycerate kinase; Provisional
Probab=98.64 E-value=8.1e-07 Score=85.32 Aligned_cols=37 Identities=30% Similarity=0.484 Sum_probs=31.9
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhCCCe-eehHHHH
Q 022951 73 KHVQWVFLGCPGVGKGTYASRLSNLLGVPH-IATGDLL 109 (289)
Q Consensus 73 ~~~~Ivl~GppGsGKSTlak~La~~lg~~~-i~~d~l~ 109 (289)
++.+|+|+|++||||||++..||..+|+.+ +++|.+-
T Consensus 254 ~p~vil~~G~~G~GKSt~a~~LA~~lg~~~ii~tD~iR 291 (475)
T PRK12337 254 RPLHVLIGGVSGVGKSVLASALAYRLGITRIVSTDAVR 291 (475)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHcCCcEEeehhHHH
Confidence 588999999999999999999999999985 4665543
No 143
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=98.63 E-value=3e-07 Score=81.09 Aligned_cols=110 Identities=20% Similarity=0.217 Sum_probs=63.4
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHHHhCC-----Ce-eehHHHHH--HHH------Hc-C--CccCHHHHHHHHHHHHHc
Q 022951 72 GKHVQWVFLGCPGVGKGTYASRLSNLLGV-----PH-IATGDLLD--EIV------SQ-G--KLVSDEIIINLLSKRLEA 134 (289)
Q Consensus 72 ~~~~~Ivl~GppGsGKSTlak~La~~lg~-----~~-i~~d~l~~--~~l------~~-g--~~v~~~~~~~ll~~~l~~ 134 (289)
.++.+|.|.|++||||||+++.|+..+.. .. ++.|+... ..+ .. + ....-+.+...+......
T Consensus 31 ~~~~iigi~G~~GsGKTTl~~~L~~~l~~~~g~~~v~i~~D~~~~~~~~~~~~g~~~~~~~~~~~d~~~~~~~l~~l~~~ 110 (229)
T PRK09270 31 QRRTIVGIAGPPGAGKSTLAEFLEALLQQDGELPAIQVPMDGFHLDNAVLDAHGLRPRKGAPETFDVAGLAALLRRLRAG 110 (229)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhhhccCCceEEEecccccCCHHHHHhcccccccCCCCCCCHHHHHHHHHHHHcC
Confidence 35788999999999999999999988732 12 55544330 010 10 1 112222233333222111
Q ss_pred c-----------------c--c--cCCceEEEcCcccH---HHHhhc-CCCcEEEEEecCHHHHHHHHhccc
Q 022951 135 G-----------------E--A--KGEAGFILDGFPRT---EILEGV-TDIDLVINLKLREEALLAKCLGRR 181 (289)
Q Consensus 135 ~-----------------~--~--~~~~g~Ildg~p~~---~~l~~~-~~~d~vI~Ld~~~e~l~~Rl~~R~ 181 (289)
. . . .....+|+||.... ..+..+ ...|.+||+++|.+..++|+..|.
T Consensus 111 ~~~i~~P~yD~~~~~~~~~~~~~~~~~~ivIvEG~~~l~~~~~~~~l~~~~D~vi~v~~~~~~~~~R~~~R~ 182 (229)
T PRK09270 111 DDEVYWPVFDRSLEDPVADAIVVPPTARLVIVEGNYLLLDEEPWRRLAGLFDFTIFLDAPAEVLRERLVARK 182 (229)
T ss_pred CCceecccCCcccCCCCCCceEecCCCCEEEEcCcceeeccccHHHHHhhCCEEEEEECCHHHHHHHHHHHH
Confidence 1 0 0 01345778884432 122221 125899999999999999999884
No 144
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=98.61 E-value=2.4e-07 Score=93.37 Aligned_cols=105 Identities=16% Similarity=0.072 Sum_probs=65.4
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHHHh-----CCCeeehHHHHHHHHHcCCccCHHHHHHHHHHHHH--cccccCCceEE
Q 022951 72 GKHVQWVFLGCPGVGKGTYASRLSNLL-----GVPHIATGDLLDEIVSQGKLVSDEIIINLLSKRLE--AGEAKGEAGFI 144 (289)
Q Consensus 72 ~~~~~Ivl~GppGsGKSTlak~La~~l-----g~~~i~~d~l~~~~l~~g~~v~~~~~~~ll~~~l~--~~~~~~~~g~I 144 (289)
.++.+|+++|.|||||||+|+.|++.+ +..+++.|++.+. +..+....++.....+..... ......+..+|
T Consensus 458 ~~~~~i~~~G~~gsGKst~a~~l~~~l~~~~~~~~~l~~D~~r~~-l~~~~~~~~~~r~~~~~~l~~~a~~~~~~G~~Vi 536 (632)
T PRK05506 458 QKPATVWFTGLSGSGKSTIANLVERRLHALGRHTYLLDGDNVRHG-LNRDLGFSDADRVENIRRVAEVARLMADAGLIVL 536 (632)
T ss_pred CCcEEEEecCCCCchHHHHHHHHHHHHHHcCCCEEEEcChhhhhc-cCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCEEE
Confidence 357899999999999999999999997 3577888777643 333433444332222211111 11011134678
Q ss_pred EcC-cccH---HHHhhcC--CCcEEEEEecCHHHHHHHH
Q 022951 145 LDG-FPRT---EILEGVT--DIDLVINLKLREEALLAKC 177 (289)
Q Consensus 145 ldg-~p~~---~~l~~~~--~~d~vI~Ld~~~e~l~~Rl 177 (289)
+|. ++.. +.+..+. ..-++|||+++.+.+.+|.
T Consensus 537 vda~~~~~~~R~~~r~l~~~~~~~~v~L~~~~e~~~~R~ 575 (632)
T PRK05506 537 VSFISPFREERELARALHGEGEFVEVFVDTPLEVCEARD 575 (632)
T ss_pred EECCCCCHHHHHHHHHhcccCCeEEEEECCCHHHHHhhC
Confidence 886 4443 3333322 1347999999999999983
No 145
>PRK05439 pantothenate kinase; Provisional
Probab=98.59 E-value=4.3e-08 Score=90.14 Aligned_cols=112 Identities=20% Similarity=0.172 Sum_probs=67.4
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHHHHhC-------CCeeehHHHHH---H-----HHH-cCC--ccCHHHHHHHHHHHH
Q 022951 71 EGKHVQWVFLGCPGVGKGTYASRLSNLLG-------VPHIATGDLLD---E-----IVS-QGK--LVSDEIIINLLSKRL 132 (289)
Q Consensus 71 ~~~~~~Ivl~GppGsGKSTlak~La~~lg-------~~~i~~d~l~~---~-----~l~-~g~--~v~~~~~~~ll~~~l 132 (289)
.+.+.+|.|.|+|||||||+|+.|++.++ +..+++|+++. . .+. .|. ....+.+...+....
T Consensus 83 ~~~~~iIgIaG~~gsGKSTla~~L~~~l~~~~~~~~v~vi~~DdFy~~~~~l~~~~l~~~kg~Pes~D~~~l~~~L~~Lk 162 (311)
T PRK05439 83 QKVPFIIGIAGSVAVGKSTTARLLQALLSRWPEHPKVELVTTDGFLYPNAVLEERGLMKRKGFPESYDMRALLRFLSDVK 162 (311)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHHhhCCCCceEEEeccccccCHHHHhhhhccccCCCcccccHHHHHHHHHHHH
Confidence 34678999999999999999999998663 35677777761 1 111 121 122233444443322
Q ss_pred Hccc-c--------------------cCCceEEEcCcccH--HHH---hhcC-CCcEEEEEecCHHHHHHHHhcccc
Q 022951 133 EAGE-A--------------------KGEAGFILDGFPRT--EIL---EGVT-DIDLVINLKLREEALLAKCLGRRI 182 (289)
Q Consensus 133 ~~~~-~--------------------~~~~g~Ildg~p~~--~~l---~~~~-~~d~vI~Ld~~~e~l~~Rl~~R~~ 182 (289)
.... . ...+.+|++|+... ... ..+. -.|+.||+|++.+.+.+|+..|..
T Consensus 163 ~G~~~v~~P~Yd~~~~d~~~~~~~~v~~~dIvIVEGi~~L~~~~~~~~~~l~d~~D~~IfVda~~~~~~~w~i~R~~ 239 (311)
T PRK05439 163 SGKPNVTAPVYSHLIYDIVPGEKQTVDQPDILIVEGLNVLQTGQNHHRLFVSDFFDFSIYVDADEDLIEKWYIERFL 239 (311)
T ss_pred cCCCeEEeeeEEeecCCcCCCceEEeCCCCEEEEcCchhccCcccccchhhHHhCCEEEEEECCHHHHHHHHHHHHH
Confidence 2111 0 01345777883321 111 1111 269999999999999998888764
No 146
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=98.59 E-value=8.8e-07 Score=74.36 Aligned_cols=100 Identities=20% Similarity=0.186 Sum_probs=61.1
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHHHHh---C--CCeeehHHHHHHHHHcCCccCHHHHHHHH------HHHHHcccccC
Q 022951 71 EGKHVQWVFLGCPGVGKGTYASRLSNLL---G--VPHIATGDLLDEIVSQGKLVSDEIIINLL------SKRLEAGEAKG 139 (289)
Q Consensus 71 ~~~~~~Ivl~GppGsGKSTlak~La~~l---g--~~~i~~d~l~~~~l~~g~~v~~~~~~~ll------~~~l~~~~~~~ 139 (289)
..++..|.|+|.+||||||+|..|.++| | ..++|.|.+- .-+..+--.+.+...+.+ ...+..
T Consensus 20 ~~~~~viW~TGLSGsGKSTiA~ale~~L~~~G~~~y~LDGDnvR-~gL~~dLgFs~edR~eniRRvaevAkll~d----- 93 (197)
T COG0529 20 GQKGAVIWFTGLSGSGKSTIANALEEKLFAKGYHVYLLDGDNVR-HGLNRDLGFSREDRIENIRRVAEVAKLLAD----- 93 (197)
T ss_pred CCCCeEEEeecCCCCCHHHHHHHHHHHHHHcCCeEEEecChhHh-hcccCCCCCChHHHHHHHHHHHHHHHHHHH-----
Confidence 4467889999999999999999999987 3 4556665554 444444334433322222 222222
Q ss_pred CceEEEcCc--ccH---HHHhhcCC--CcEEEEEecCHHHHHHH
Q 022951 140 EAGFILDGF--PRT---EILEGVTD--IDLVINLKLREEALLAK 176 (289)
Q Consensus 140 ~~g~Ildg~--p~~---~~l~~~~~--~d~vI~Ld~~~e~l~~R 176 (289)
...++|-.| |.. ++...+.. .-+-||+++|.+++.+|
T Consensus 94 aG~iviva~ISP~r~~R~~aR~~~~~~~FiEVyV~~pl~vce~R 137 (197)
T COG0529 94 AGLIVIVAFISPYREDRQMARELLGEGEFIEVYVDTPLEVCERR 137 (197)
T ss_pred CCeEEEEEeeCccHHHHHHHHHHhCcCceEEEEeCCCHHHHHhc
Confidence 124455443 333 33333332 35679999999999887
No 147
>PRK12269 bifunctional cytidylate kinase/ribosomal protein S1; Provisional
Probab=98.57 E-value=1e-06 Score=91.02 Aligned_cols=37 Identities=27% Similarity=0.386 Sum_probs=35.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhCCCeeehHHHHHH
Q 022951 75 VQWVFLGCPGVGKGTYASRLSNLLGVPHIATGDLLDE 111 (289)
Q Consensus 75 ~~Ivl~GppGsGKSTlak~La~~lg~~~i~~d~l~~~ 111 (289)
++|.|.|||||||||+|+.||++|++.|++++.+++.
T Consensus 35 ~~i~idG~~gsGKst~~~~la~~l~~~~~~~g~~yRa 71 (863)
T PRK12269 35 VIIALDGPAGSGKSSVCRLLASRLGAQCLNTGSFYRA 71 (863)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCcEEeHHHHHHH
Confidence 5899999999999999999999999999999999954
No 148
>PF07931 CPT: Chloramphenicol phosphotransferase-like protein; InterPro: IPR012853 The members of this family are all similar to chloramphenicol 3-O phosphotransferase (CPT, Q56148 from SWISSPROT) expressed by Streptomyces venezuelae. Chloramphenicol (Cm) is a metabolite produced by this bacterium that can inhibit ribosomal peptidyl transferase activity and therefore protein production. By transferring a phosphate group to the C-3 hydroxyl group of Cm, CPT inactivates this potentially lethal metabolite [, ]. ; GO: 0005524 ATP binding, 0016740 transferase activity; PDB: 1QHX_A 1QHN_A 1GRR_A 1QHY_A 1QHS_A 1GRQ_A.
Probab=98.56 E-value=2.4e-07 Score=78.45 Aligned_cols=106 Identities=16% Similarity=0.186 Sum_probs=62.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhCC--CeeehHHHHHHHHH----cCCcc-C-------HHH---HHHHHHHHHHcccc
Q 022951 75 VQWVFLGCPGVGKGTYASRLSNLLGV--PHIATGDLLDEIVS----QGKLV-S-------DEI---IINLLSKRLEAGEA 137 (289)
Q Consensus 75 ~~Ivl~GppGsGKSTlak~La~~lg~--~~i~~d~l~~~~l~----~g~~v-~-------~~~---~~~ll~~~l~~~~~ 137 (289)
.+|+|-|+|-|||||+|+.|.+.+.- .|+++|.++..+.. .+.-+ + ... +...+...+.....
T Consensus 2 ~iI~LNG~sSSGKSsia~~Lq~~~~~p~~~l~~D~f~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~iaa~a~ 81 (174)
T PF07931_consen 2 QIIILNGPSSSGKSSIARALQERLPEPWLHLSVDTFVDMMPPGRYRPGDGLEPAGDRPDGGPLFRRLYAAMHAAIAAMAR 81 (174)
T ss_dssp -EEEEEE-TTSSHHHHHHHHHHHSSS-EEEEEHHHHHHHS-GGGGTSTTSEEEETTSEEE-HHHHHHHHHHHHHHHHHHH
T ss_pred eEEEEeCCCCCCHHHHHHHHHHhCcCCeEEEecChHHhhcCcccccCCccccccccCCchhHHHHHHHHHHHHHHHHHHh
Confidence 47899999999999999999999964 56788888853221 11111 0 122 22222333322221
Q ss_pred cCCceEEEcCcccH-----HHHhh-cCC-CcEEEEEecCHHHHHHHHhccc
Q 022951 138 KGEAGFILDGFPRT-----EILEG-VTD-IDLVINLKLREEALLAKCLGRR 181 (289)
Q Consensus 138 ~~~~g~Ildg~p~~-----~~l~~-~~~-~d~vI~Ld~~~e~l~~Rl~~R~ 181 (289)
. +..+|+|..... +.|++ +.. +-++|-+.||.+++.+|-..|.
T Consensus 82 a-G~~VIvD~v~~~~~~l~d~l~~~L~~~~vl~VgV~Cpleil~~RE~~Rg 131 (174)
T PF07931_consen 82 A-GNNVIVDDVFLGPRWLQDCLRRLLAGLPVLFVGVRCPLEILERRERARG 131 (174)
T ss_dssp T-T-EEEEEE--TTTHHHHHHHHHHHTTS-EEEEEEE--HHHHHHHHHHHT
T ss_pred C-CCCEEEecCccCcHHHHHHHHHHhCCCceEEEEEECCHHHHHHHHHhcC
Confidence 2 568999974322 44533 323 5579999999999999998885
No 149
>PF03668 ATP_bind_2: P-loop ATPase protein family; InterPro: IPR005337 This entry represents UPF0042 nucleotide-binding proteins. This is a family of putative P-loop ATPases [], as they contain an ATP-binding site and display ATPase and GTPase activities.; GO: 0005524 ATP binding
Probab=98.55 E-value=5.4e-06 Score=74.91 Aligned_cols=96 Identities=19% Similarity=0.213 Sum_probs=60.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhCCCeeehHHHHHHHHHcCCccCHHHHHHHHHHHHHcccccCCceEEEcCcccH---
Q 022951 75 VQWVFLGCPGVGKGTYASRLSNLLGVPHIATGDLLDEIVSQGKLVSDEIIINLLSKRLEAGEAKGEAGFILDGFPRT--- 151 (289)
Q Consensus 75 ~~Ivl~GppGsGKSTlak~La~~lg~~~i~~d~l~~~~l~~g~~v~~~~~~~ll~~~l~~~~~~~~~g~Ildg~p~~--- 151 (289)
.+|+|+|.+||||||..+.| +.+|+..++. +|...+..+++...........-.+++|--...
T Consensus 2 ~~vIiTGlSGaGKs~Al~~l-ED~Gy~cvDN-------------lP~~Ll~~l~~~~~~~~~~~~~~Ai~iD~R~~~~~~ 67 (284)
T PF03668_consen 2 ELVIITGLSGAGKSTALRAL-EDLGYYCVDN-------------LPPSLLPQLIELLAQSNSKIEKVAIVIDIRSREFFE 67 (284)
T ss_pred eEEEEeCCCcCCHHHHHHHH-HhcCeeEEcC-------------CcHHHHHHHHHHHHhcCCCCceEEEEEeCCChHHHH
Confidence 46889999999999999988 5678888865 444555554444332211111225677742211
Q ss_pred ---HHHh---hcCCCcEEEEEecCHHHHHHHHh-cccccc
Q 022951 152 ---EILE---GVTDIDLVINLKLREEALLAKCL-GRRICS 184 (289)
Q Consensus 152 ---~~l~---~~~~~d~vI~Ld~~~e~l~~Rl~-~R~~~~ 184 (289)
+.+. .....-.++||+++++++++|.. -|+.|+
T Consensus 68 ~~~~~~~~l~~~~~~~~ilFLdA~d~~LirRy~eTRR~HP 107 (284)
T PF03668_consen 68 DLFEALDELRKKGIDVRILFLDASDEVLIRRYSETRRRHP 107 (284)
T ss_pred HHHHHHHHHHhcCCceEEEEEECChHHHHHHHHhccCCCC
Confidence 2222 22234569999999999999986 466664
No 150
>TIGR03575 selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryotic. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents eukaryotic proteins with this activity.
Probab=98.55 E-value=2.3e-07 Score=86.34 Aligned_cols=33 Identities=39% Similarity=0.539 Sum_probs=28.5
Q ss_pred EEEEcCCCCCHHHHHHHHHHHhC------CCeeehHHHH
Q 022951 77 WVFLGCPGVGKGTYASRLSNLLG------VPHIATGDLL 109 (289)
Q Consensus 77 Ivl~GppGsGKSTlak~La~~lg------~~~i~~d~l~ 109 (289)
.+|+|+|||||||+++.|++.+. +.+++.|+++
T Consensus 2 ~~l~Gl~GaGKST~~~~l~~~l~~~~g~~v~~~~~Dd~i 40 (340)
T TIGR03575 2 CVLCGLPAAGKSTLARSLSATLRRERGWAVAVITYDDII 40 (340)
T ss_pred eEEECCCCCCHHHHHHHHHHHHHhccCCeEEEEcccccc
Confidence 58999999999999999998775 3488888877
No 151
>cd02026 PRK Phosphoribulokinase (PRK) is an enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. This enzyme catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=98.55 E-value=1.5e-07 Score=85.34 Aligned_cols=103 Identities=24% Similarity=0.343 Sum_probs=59.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHh---CCCeeehHHHHH----HHHHcCC--ccCH----HHHHHHHHHHHHcccc-----
Q 022951 76 QWVFLGCPGVGKGTYASRLSNLL---GVPHIATGDLLD----EIVSQGK--LVSD----EIIINLLSKRLEAGEA----- 137 (289)
Q Consensus 76 ~Ivl~GppGsGKSTlak~La~~l---g~~~i~~d~l~~----~~l~~g~--~v~~----~~~~~ll~~~l~~~~~----- 137 (289)
+|.|+|++||||||+++.|+..+ +...+..|++.. .....|. .-++ +.+...+. .+..+..
T Consensus 1 iigI~G~sGsGKSTl~~~L~~ll~~~~~~vi~~Dd~~~~~~~~r~~~g~~~~~p~~~~~d~l~~~l~-~Lk~g~~i~~P~ 79 (273)
T cd02026 1 IIGVAGDSGCGKSTFLRRLTSLFGSDLVTVICLDDYHSLDRKGRKETGITALDPRANNFDLMYEQLK-ALKEGQAIEKPI 79 (273)
T ss_pred CEEEECCCCCCHHHHHHHHHHhhCCCceEEEECcccccCCHHHHHHhhcccccccchhHHHHHHHHH-HHHCCCCccccc
Confidence 47899999999999999999887 455777776641 1011111 1111 11112221 1111110
Q ss_pred --------------cCCceEEEcCcc-cH-HHHhhcCCCcEEEEEecCHHHHHHHHhccc
Q 022951 138 --------------KGEAGFILDGFP-RT-EILEGVTDIDLVINLKLREEALLAKCLGRR 181 (289)
Q Consensus 138 --------------~~~~g~Ildg~p-~~-~~l~~~~~~d~vI~Ld~~~e~l~~Rl~~R~ 181 (289)
....-+|++|.. .. ..+..+ .|+.||++++.++.++|..+|.
T Consensus 80 y~~~~~~~~~~~~i~~~~ivIvEG~~~l~~~~l~~~--~D~~I~vd~~~e~r~~r~i~Rd 137 (273)
T cd02026 80 YNHVTGLIDPPELIKPTKIVVIEGLHPLYDERVREL--LDFSVYLDISDEVKFAWKIQRD 137 (273)
T ss_pred ccccCCCcCCcEEcCCCCEEEEeeehhhCchhhhhh--ccEEEEEECChhHHHHHHHHHH
Confidence 112467888843 22 233333 5999999999999977666553
No 152
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=98.55 E-value=2.1e-07 Score=66.68 Aligned_cols=57 Identities=28% Similarity=0.272 Sum_probs=41.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHh---CCCeeehHHHHHHHHHcCCccCHHHHHHHHHHHHHcccccCCceEEEcCcccH-
Q 022951 76 QWVFLGCPGVGKGTYASRLSNLL---GVPHIATGDLLDEIVSQGKLVSDEIIINLLSKRLEAGEAKGEAGFILDGFPRT- 151 (289)
Q Consensus 76 ~Ivl~GppGsGKSTlak~La~~l---g~~~i~~d~l~~~~l~~g~~v~~~~~~~ll~~~l~~~~~~~~~g~Ildg~p~~- 151 (289)
.|+|+|+|||||||+++.|++.+ +..+++. .||+||+...
T Consensus 1 ~i~i~G~~gsGKst~~~~l~~~l~~~~~~~i~~------------------------------------~~I~eg~~~~~ 44 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAEQLGGRSVVVLDE------------------------------------IVILEGLYASY 44 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHHHhcCCCEEEEeE------------------------------------EEEecchhhhh
Confidence 37899999999999999999985 2333322 6899996655
Q ss_pred HHH--hhcCCCcEEEEEec
Q 022951 152 EIL--EGVTDIDLVINLKL 168 (289)
Q Consensus 152 ~~l--~~~~~~d~vI~Ld~ 168 (289)
... .....+|..||||+
T Consensus 45 ~~~~~~~~~~~d~~Iyld~ 63 (69)
T cd02019 45 KSRDARIRDLADLKIYLDA 63 (69)
T ss_pred hhHHhhccccccEEEEEEe
Confidence 221 22335899999997
No 153
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=98.53 E-value=3.3e-07 Score=77.94 Aligned_cols=103 Identities=23% Similarity=0.242 Sum_probs=62.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHh-----CCCeeehHHHHHHH----HHcCCcc-----CHHHHHHHHHHHHHcc------
Q 022951 76 QWVFLGCPGVGKGTYASRLSNLL-----GVPHIATGDLLDEI----VSQGKLV-----SDEIIINLLSKRLEAG------ 135 (289)
Q Consensus 76 ~Ivl~GppGsGKSTlak~La~~l-----g~~~i~~d~l~~~~----l~~g~~v-----~~~~~~~ll~~~l~~~------ 135 (289)
+|.|.|+|||||||+|+.|++.+ +..+++.|++++.. ...|..- .-+.+.+.+.......
T Consensus 1 ii~i~G~sgsGKttla~~l~~~l~~~~~~~~~i~~Ddf~~~~~~~~~~~g~~d~~~~~d~~~l~~~l~~l~~~~~~~~p~ 80 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSNQLRVNGIGPVVISLDDYYVPRKTPRDEDGNYDFESILDLDLLNKNLHDLLNGKEVELPI 80 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEehhhcccCcccccccCCCCCCCccccHHHHHHHHHHHHCCCeeeccc
Confidence 47899999999999999999986 45789999988421 1112211 2233444443322111
Q ss_pred --------------cccCCceEEEcCcccH-HHHhhcCCCcEEEEEecCHHH-HHHHHhcc
Q 022951 136 --------------EAKGEAGFILDGFPRT-EILEGVTDIDLVINLKLREEA-LLAKCLGR 180 (289)
Q Consensus 136 --------------~~~~~~g~Ildg~p~~-~~l~~~~~~d~vI~Ld~~~e~-l~~Rl~~R 180 (289)
......-+|+||.... ..+..+ .|+.||++++.+. .+.|-..|
T Consensus 81 yd~~~~~~~~~~~~~~~~~~vIIvEG~~~l~~~l~~~--~d~~I~vd~~~~~~rl~rri~R 139 (179)
T cd02028 81 YDFRTGKRRGYRKLKLPPSGVVILEGIYALNERLRSL--LDIRVAVSGGVHLNRLLRRVVR 139 (179)
T ss_pred ceeECCccCCCceEEeCCCCEEEEecHHhcCHhHHhh--cCEEEEEeCCccHHHHHHHHHH
Confidence 0011346788883333 344443 5999999999997 44444334
No 154
>COG3709 Uncharacterized component of phosphonate metabolism [Inorganic ion transport and metabolism]
Probab=98.50 E-value=4.7e-06 Score=69.00 Aligned_cols=150 Identities=17% Similarity=0.160 Sum_probs=90.1
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHHHhCC---CeeehHHHH-HHHH---HcCCccCHHHHHHH-------------------
Q 022951 74 HVQWVFLGCPGVGKGTYASRLSNLLGV---PHIATGDLL-DEIV---SQGKLVSDEIIINL------------------- 127 (289)
Q Consensus 74 ~~~Ivl~GppGsGKSTlak~La~~lg~---~~i~~d~l~-~~~l---~~g~~v~~~~~~~l------------------- 127 (289)
..+|++.||+|+||.|+..++...+.. .||.= .++ +... ++...+++..+...
T Consensus 5 G~lI~vvGPSGAGKDtl~~~ar~~l~~~~r~~fvr-RvITRpa~ag~EdH~avs~~eF~~~a~~g~FAlsWqAhGL~Ygi 83 (192)
T COG3709 5 GRLIAVVGPSGAGKDTLLDAARARLAGRPRLHFVR-RVITRPADAGGEDHDALSEAEFNTRAGQGAFALSWQAHGLSYGI 83 (192)
T ss_pred ceEEEEECCCCCChHHHHHHHHHHhccCCceEEEE-EEecccCCCCcccccccCHHHHHHHhhcCceeEEehhcCccccC
Confidence 468899999999999999998888732 22210 001 0000 00111222222111
Q ss_pred ---HHHHHHcccccCCceEEEcCcccH-HHHhhcCCCcEEEEEecCHHHHHHHHhcccccccCCCccccccccccCCCCC
Q 022951 128 ---LSKRLEAGEAKGEAGFILDGFPRT-EILEGVTDIDLVINLKLREEALLAKCLGRRICSECGGNYNVACIDIKGENGN 203 (289)
Q Consensus 128 ---l~~~l~~~~~~~~~g~Ildg~p~~-~~l~~~~~~d~vI~Ld~~~e~l~~Rl~~R~~~~~~g~~y~~~~~~~~~~~~~ 203 (289)
+...+.. +..+|++|.-.. ..+.+.+.--.+|.|.++++++.+||..|..
T Consensus 84 p~eId~wl~~-----G~vvl~NgSRa~Lp~arrry~~Llvv~ita~p~VLaqRL~~RGR--------------------- 137 (192)
T COG3709 84 PAEIDLWLAA-----GDVVLVNGSRAVLPQARRRYPQLLVVCITASPEVLAQRLAERGR--------------------- 137 (192)
T ss_pred chhHHHHHhC-----CCEEEEeccHhhhHHHHHhhhcceeEEEecCHHHHHHHHHHhcc---------------------
Confidence 2222222 234555552222 2222223345699999999999999998852
Q ss_pred CCCCCCCCCCCCccccCccccCCCcHHHHHHHHHHHHHhchHHHHHHHHcCcEEEEeCCCCcccHHHHHHHHhccCC
Q 022951 204 PGMYMGPLLPPPHCASKLITRSDDKEEVVRERLRIYNEKSRPVEEFYRRRGKLLEFDLPGGIPESWPKLLQALNLED 280 (289)
Q Consensus 204 ~~~~~~~~~~~~~~~~~L~~r~~d~~~~~~~rl~~y~~~~~~l~~~y~~~~~l~~id~~~~~~ev~~~i~~~l~~~~ 280 (289)
++.+.+..||..-.... ...+.+..||+++.++...+++.+.|..+.
T Consensus 138 -----------------------Es~eeI~aRL~R~a~~~-------~~~~dv~~idNsG~l~~ag~~ll~~l~~~~ 184 (192)
T COG3709 138 -----------------------ESREEILARLARAARYT-------AGPGDVTTIDNSGELEDAGERLLALLHQDS 184 (192)
T ss_pred -----------------------CCHHHHHHHHHhhcccc-------cCCCCeEEEcCCCcHHHHHHHHHHHHHhhc
Confidence 34677888876533221 124679999999999999999999988554
No 155
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=98.49 E-value=2.1e-07 Score=84.92 Aligned_cols=109 Identities=22% Similarity=0.262 Sum_probs=63.4
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHHHhC-------CCeeehHHHHH--HHHH-cC----CccCH----HHHHHHHHHHHH
Q 022951 72 GKHVQWVFLGCPGVGKGTYASRLSNLLG-------VPHIATGDLLD--EIVS-QG----KLVSD----EIIINLLSKRLE 133 (289)
Q Consensus 72 ~~~~~Ivl~GppGsGKSTlak~La~~lg-------~~~i~~d~l~~--~~l~-~g----~~v~~----~~~~~ll~~~l~ 133 (289)
..+.+|.|.|++||||||+++.|...+. +..+++|.... ..+. .| .-.|+ +.+...+.....
T Consensus 60 ~~p~IIGIaG~~GSGKSTlar~L~~ll~~~~~~g~V~vi~~D~f~~~~~~l~~~g~~~~~g~P~s~D~~~l~~~L~~Lk~ 139 (290)
T TIGR00554 60 KIPYIISIAGSVAVGKSTTARILQALLSRWPEHRKVELITTDGFLHPNQVLKERNLMKKKGFPESYDMHRLVKFLSDLKS 139 (290)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHhhcCCCCceEEEecccccccHHHHHHcCCccccCCChhccHHHHHHHHHHHHC
Confidence 3568899999999999999998877653 34566666551 1111 11 11222 223333322221
Q ss_pred ccc---------------------ccCCceEEEcCcccH---H---------HHhhcCCCcEEEEEecCHHHHHHHHhcc
Q 022951 134 AGE---------------------AKGEAGFILDGFPRT---E---------ILEGVTDIDLVINLKLREEALLAKCLGR 180 (289)
Q Consensus 134 ~~~---------------------~~~~~g~Ildg~p~~---~---------~l~~~~~~d~vI~Ld~~~e~l~~Rl~~R 180 (289)
... ....+.+|++|.... + .+.. -.|+.||+|+|.+.+.+|+..|
T Consensus 140 g~~~v~~P~Yd~~~~d~~~~~~~~v~~~dIiIvEGi~vL~~~~~~~~~~~~~~~~d--~~D~~IyvDa~~d~~~~w~i~R 217 (290)
T TIGR00554 140 GKPNVTAPVYSHLTYDVIPDGFKVVVQPDILILEGLNVLQSGMDYPHDPHHVFVSD--FVDFSIYVDAEEDLLQTWYINR 217 (290)
T ss_pred CCCceecCccccccCCcCCCCeEEcCCCCEEEECCchHhCCchhcccccchHHHHH--hCCEEEEEECCHHHHHHHHHHH
Confidence 100 011346777883221 1 1122 2699999999999999998888
Q ss_pred cc
Q 022951 181 RI 182 (289)
Q Consensus 181 ~~ 182 (289)
..
T Consensus 218 ~~ 219 (290)
T TIGR00554 218 FL 219 (290)
T ss_pred HH
Confidence 53
No 156
>PLN02318 phosphoribulokinase/uridine kinase
Probab=98.43 E-value=6.1e-07 Score=88.34 Aligned_cols=37 Identities=16% Similarity=0.299 Sum_probs=30.4
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHHh-CCCeeehHHHH
Q 022951 73 KHVQWVFLGCPGVGKGTYASRLSNLL-GVPHIATGDLL 109 (289)
Q Consensus 73 ~~~~Ivl~GppGsGKSTlak~La~~l-g~~~i~~d~l~ 109 (289)
.+.+|.|.||+||||||+++.|+..+ +...++.|+..
T Consensus 64 ~riIIGIaGpSGSGKTTLAk~LaglLp~vgvIsmDdy~ 101 (656)
T PLN02318 64 GIILVGVAGPSGAGKTVFTEKVLNFMPSIAVISMDNYN 101 (656)
T ss_pred CeEEEEEECCCCCcHHHHHHHHHhhCCCcEEEEEccee
Confidence 46889999999999999999999987 34566666654
No 157
>PHA00729 NTP-binding motif containing protein
Probab=98.41 E-value=1.7e-06 Score=75.99 Aligned_cols=106 Identities=17% Similarity=0.089 Sum_probs=63.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhCC--CeeehHHHHHHHHHcCCccCHHHHHHHHHHHHHcccccCCceEEEcCcccH-
Q 022951 75 VQWVFLGCPGVGKGTYASRLSNLLGV--PHIATGDLLDEIVSQGKLVSDEIIINLLSKRLEAGEAKGEAGFILDGFPRT- 151 (289)
Q Consensus 75 ~~Ivl~GppGsGKSTlak~La~~lg~--~~i~~d~l~~~~l~~g~~v~~~~~~~ll~~~l~~~~~~~~~g~Ildg~p~~- 151 (289)
..|+|+|+||+||||+|..|+..++. ..++.++...........++.+.+...+......... ..-+|+|++.-.
T Consensus 18 ~nIlItG~pGvGKT~LA~aLa~~l~~~l~~l~~~~~~~d~~~~~~fid~~~Ll~~L~~a~~~~~~--~dlLIIDd~G~~~ 95 (226)
T PHA00729 18 VSAVIFGKQGSGKTTYALKVARDVFWKLNNLSTKDDAWQYVQNSYFFELPDALEKIQDAIDNDYR--IPLIIFDDAGIWL 95 (226)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHhhcccccchhhHHhcCCcEEEEEHHHHHHHHHHHHhcCCC--CCEEEEeCCchhh
Confidence 57999999999999999999998752 2222321111100111233444445555544433211 134689983222
Q ss_pred -H---H----------HhhcC-CCcEEEEEecCHHHHHHHHhcccc
Q 022951 152 -E---I----------LEGVT-DIDLVINLKLREEALLAKCLGRRI 182 (289)
Q Consensus 152 -~---~----------l~~~~-~~d~vI~Ld~~~e~l~~Rl~~R~~ 182 (289)
+ . ...+. ..++++++.++++.+.+++..|..
T Consensus 96 ~~~~wh~~~~~~yf~L~~aLrSR~~l~il~~ls~edL~~~Lr~Rg~ 141 (226)
T PHA00729 96 SKYVWYEDYMKTFYKIYALIRTRVSAVIFTTPSPEDLAFYLREKGW 141 (226)
T ss_pred cccchhhhccchHHHHHHHHHhhCcEEEEecCCHHHHHHHHHhCCC
Confidence 1 1 11111 478999999999999999999863
No 158
>COG4639 Predicted kinase [General function prediction only]
Probab=98.41 E-value=2.2e-06 Score=70.54 Aligned_cols=103 Identities=25% Similarity=0.216 Sum_probs=63.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhCCCeeehHHHHHHH-HHcCC---ccCHHHHHHHHHHHHHcccccCCceEEEcCccc
Q 022951 75 VQWVFLGCPGVGKGTYASRLSNLLGVPHIATGDLLDEI-VSQGK---LVSDEIIINLLSKRLEAGEAKGEAGFILDGFPR 150 (289)
Q Consensus 75 ~~Ivl~GppGsGKSTlak~La~~lg~~~i~~d~l~~~~-l~~g~---~v~~~~~~~ll~~~l~~~~~~~~~g~Ildg~p~ 150 (289)
..++++|+|||||||+++... .....++.+++-... ...+. .-.++...+++...+...-.. ++..|+|....
T Consensus 3 ~LvvL~G~~~sGKsT~ak~n~--~~~~~lsld~~r~~lg~~~~~e~sqk~~~~~~~~l~~~l~qrl~~-Gk~tiidAtn~ 79 (168)
T COG4639 3 ILVVLRGASGSGKSTFAKENF--LQNYVLSLDDLRLLLGVSASKENSQKNDELVWDILYKQLEQRLRR-GKFTIIDATNL 79 (168)
T ss_pred eEEEEecCCCCchhHHHHHhC--CCcceecHHHHHHHhhhchhhhhccccHHHHHHHHHHHHHHHHHc-CCeEEEEcccC
Confidence 468999999999999998753 357788887776322 01111 112233333333333332222 45789998542
Q ss_pred H--------HHHhhcCCCcEEEEEecCHHHHHHHHhcc
Q 022951 151 T--------EILEGVTDIDLVINLKLREEALLAKCLGR 180 (289)
Q Consensus 151 ~--------~~l~~~~~~d~vI~Ld~~~e~l~~Rl~~R 180 (289)
. .......-...+|+||.|.+.+.+|.+.|
T Consensus 80 rr~~r~~l~~La~~y~~~~~~ivfdtp~~~c~aRNk~~ 117 (168)
T COG4639 80 RREDRRKLIDLAKAYGYKIYAIVFDTPLELCLARNKLR 117 (168)
T ss_pred CHHHHHHHHHHHHHhCCeEEEEEEeCCHHHHHHHhhcc
Confidence 2 22223334678999999999999997644
No 159
>COG1072 CoaA Panthothenate kinase [Coenzyme metabolism]
Probab=98.40 E-value=5.7e-07 Score=80.42 Aligned_cols=113 Identities=19% Similarity=0.188 Sum_probs=64.2
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHHHHhC-------CCeeehHHHH-------H-HHHH-cCC--ccCHHHHHHHHHHHH
Q 022951 71 EGKHVQWVFLGCPGVGKGTYASRLSNLLG-------VPHIATGDLL-------D-EIVS-QGK--LVSDEIIINLLSKRL 132 (289)
Q Consensus 71 ~~~~~~Ivl~GppGsGKSTlak~La~~lg-------~~~i~~d~l~-------~-~~l~-~g~--~v~~~~~~~ll~~~l 132 (289)
...+++|.|.|++|+||||+|+.|+..+. +..+.+|-.+ . .++. +|- ...-..+.+.+...-
T Consensus 79 ~~~pfIIgiaGsvavGKST~ar~L~~ll~~~~~~~~v~lvpmDGFhy~n~~L~~~glm~rKGfPeSyD~~~ll~fl~~vK 158 (283)
T COG1072 79 QQRPFIIGIAGSVAVGKSTTARILQALLSRWPESPKVDLVTMDGFHYPNAVLDERGLMARKGFPESYDVAALLRFLSDVK 158 (283)
T ss_pred CCCCEEEEeccCccccHHHHHHHHHHHHhhCCCCCceEEEeccccccCHhHhhhccccccCCCCccccHHHHHHHHHHHh
Confidence 45689999999999999999999988772 1223333222 1 1111 121 112222333332221
Q ss_pred Hccc-------------------c--cCCceEEEcCcccH---HHHhhcC-CCcEEEEEecCHHHHHHHHhccccc
Q 022951 133 EAGE-------------------A--KGEAGFILDGFPRT---EILEGVT-DIDLVINLKLREEALLAKCLGRRIC 183 (289)
Q Consensus 133 ~~~~-------------------~--~~~~g~Ildg~p~~---~~l~~~~-~~d~vI~Ld~~~e~l~~Rl~~R~~~ 183 (289)
.... + ...+.+|++|.... +.|-.+. -+|+.||+|++.+.+.+|+..|+..
T Consensus 159 ~~~~~v~aPvysh~~yD~vpd~~~v~~~pdIlI~EG~nvLq~~~p~~~~sdffDfSIyvDa~~~~le~wyi~Rfl~ 234 (283)
T COG1072 159 AGKPDVFAPVYSHLIYDPVPDAFQVVPQPDILIVEGNNVLQDGEPWLFLSDFFDFSIYVDADEELLEERYIERFLK 234 (283)
T ss_pred cCCCccccccccccccccCCCceeecCCCCEEEEechhhhcCCCccccccccceEEEEecCCHHHHHHHHHHHHHh
Confidence 1111 0 11345677773222 1111111 2799999999999999999999864
No 160
>PLN02165 adenylate isopentenyltransferase
Probab=98.39 E-value=2.1e-06 Score=79.55 Aligned_cols=38 Identities=21% Similarity=0.310 Sum_probs=34.1
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHHHHhCCCeeehHHH
Q 022951 71 EGKHVQWVFLGCPGVGKGTYASRLSNLLGVPHIATGDL 108 (289)
Q Consensus 71 ~~~~~~Ivl~GppGsGKSTlak~La~~lg~~~i~~d~l 108 (289)
..+..+|+|+||+||||||++..||+.++..+++.|.+
T Consensus 40 ~~~g~iivIiGPTGSGKStLA~~LA~~l~~eIIsaDs~ 77 (334)
T PLN02165 40 NCKDKVVVIMGATGSGKSRLSVDLATRFPSEIINSDKM 77 (334)
T ss_pred CCCCCEEEEECCCCCcHHHHHHHHHHHcCCceecCChh
Confidence 34456899999999999999999999999999999887
No 161
>PHA03132 thymidine kinase; Provisional
Probab=98.34 E-value=2.1e-05 Score=77.68 Aligned_cols=29 Identities=28% Similarity=0.379 Sum_probs=25.4
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhCCC
Q 022951 73 KHVQWVFLGCPGVGKGTYASRLSNLLGVP 101 (289)
Q Consensus 73 ~~~~Ivl~GppGsGKSTlak~La~~lg~~ 101 (289)
+.++|+|.|+.||||||+++.|++.+|..
T Consensus 256 ~~~fIv~EGidGsGKTTlik~L~e~lg~~ 284 (580)
T PHA03132 256 PACFLFLEGVMGVGKTTLLNHMRGILGDN 284 (580)
T ss_pred ceEEEEEECCCCCCHHHHHHHHHHHhCCc
Confidence 36889999999999999999999988433
No 162
>PF01591 6PF2K: 6-phosphofructo-2-kinase; InterPro: IPR013079 6-Phosphofructo-2-kinase (2.7.1.105 from EC, 3.1.3.46 from EC) is a bifunctional enzyme that catalyses both the synthesis and the degradation of fructose-2, 6-bisphosphate. The fructose-2,6-bisphosphatase reaction involves a phosphohistidine intermediate. The catalytic pathway is: ATP + D-fructose 6-phosphate = ADP + D-fructose 2,6-bisphosphate D-fructose 2,6-bisphosphate + H2O = 6-fructose 6-phosphate + Pi The enzyme is important in the regulation of hepatic carbohydrate metabolism and is found in greatest quantities in the liver, kidney and heart. In mammals, several genes often encode different isoforms, each of which differs in its tissue distribution and enzymatic activity []. The family described here bears a resemblance to the ATP-driven phospho-fructokinases, however, they share little sequence similarity, although a few residues seem key to their interaction with fructose 6-phosphate []. This domain forms the N-terminal region of this enzyme, while IPR013078 from INTERPRO forms the C-terminal domain.; GO: 0003873 6-phosphofructo-2-kinase activity, 0005524 ATP binding, 0006000 fructose metabolic process; PDB: 2DWO_A 3QPW_A 3QPV_A 3QPU_A 2I1V_B 2DWP_A 2AXN_A 1K6M_B 3BIF_A 2BIF_A ....
Probab=98.23 E-value=1.6e-05 Score=69.94 Aligned_cols=143 Identities=18% Similarity=0.266 Sum_probs=71.4
Q ss_pred CCCCceEEEEEcCCCCCHHHHHHHHHHHh---C--CCeeehHHHHHHHHHcCC----ccCH---------HHHHHHHHHH
Q 022951 70 GEGKHVQWVFLGCPGVGKGTYASRLSNLL---G--VPHIATGDLLDEIVSQGK----LVSD---------EIIINLLSKR 131 (289)
Q Consensus 70 ~~~~~~~Ivl~GppGsGKSTlak~La~~l---g--~~~i~~d~l~~~~l~~g~----~v~~---------~~~~~ll~~~ 131 (289)
....+.+|+++|.|+.|||++|+.|+.-| | ..+|+.+++-+....... ..|+ .+....+++.
T Consensus 8 ~~~~kl~ivmVGLPArGKs~ia~kl~ryL~w~g~~~~vFn~g~yRR~~~~~~~~~~ff~p~n~~~~~~R~~~a~~~l~dl 87 (222)
T PF01591_consen 8 FHAGKLVIVMVGLPARGKSYIARKLCRYLNWLGVKTKVFNVGDYRRKLSGAPQDAEFFDPDNEEAKKLREQIAKEALEDL 87 (222)
T ss_dssp -----EEEEEESSTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHHHHHHSS-S-GGGGSTT-HHHHHHHHHHHHHHHHHH
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHHHHhhcCCCcceeecccceecccccccccccCCCCChHHHHHHHHHHHHHHHHH
Confidence 34567899999999999999999999876 3 477889998866543311 1111 1122233333
Q ss_pred HHcccccCCceEEEcCcccH--------HHHhhcCCCcEEEEEe--cCHHHHHH-HHhcccccccCCCccccccccccCC
Q 022951 132 LEAGEAKGEAGFILDGFPRT--------EILEGVTDIDLVINLK--LREEALLA-KCLGRRICSECGGNYNVACIDIKGE 200 (289)
Q Consensus 132 l~~~~~~~~~g~Ildg~p~~--------~~l~~~~~~d~vI~Ld--~~~e~l~~-Rl~~R~~~~~~g~~y~~~~~~~~~~ 200 (289)
+.-....+++.-|+|+.-.+ +.+.... ..++|+. |+++.+++ .+..-... .-.|.-
T Consensus 88 ~~~l~~~~G~VAI~DATN~T~~RR~~l~~~~~~~~--~~vlFIEsic~D~~ii~~NI~~~~~~---spDY~~-------- 154 (222)
T PF01591_consen 88 IEWLQEEGGQVAIFDATNSTRERRKMLVERFKEHG--IKVLFIESICDDPEIIERNIREKKQN---SPDYKG-------- 154 (222)
T ss_dssp HHHHHTS--SEEEEES---SHHHHHHHHHHHHHTT---EEEEEEEE---HHHHHHHHHHHHTT---SGGGTT--------
T ss_pred HHHHhcCCCeEEEEeCCCCCHHHHHHHHHHHHHcC--CcEEEEEEEeCCHHHHHHHHHHHHcC---Cccccc--------
Confidence 33222222567899985544 2233322 3455655 55555444 44332211 011110
Q ss_pred CCCCCCCCCCCCCCCccccCccccCCCcHHHHHHHHHHHHHhchHHH
Q 022951 201 NGNPGMYMGPLLPPPHCASKLITRSDDKEEVVRERLRIYNEKSRPVE 247 (289)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~L~~r~~d~~~~~~~rl~~y~~~~~~l~ 247 (289)
..+++..+.+.+|++.|+..++++.
T Consensus 155 ----------------------~~~e~A~~Df~~RI~~Ye~~YEpl~ 179 (222)
T PF01591_consen 155 ----------------------MDPEEAIEDFKKRIEHYEKVYEPLD 179 (222)
T ss_dssp ----------------------S-HHHHHHHHHHHHHHHHTT-----
T ss_pred ----------------------CCHHHHHHHHHHHHHhhcccccccc
Confidence 0113346778899999999999986
No 163
>COG2074 2-phosphoglycerate kinase [Carbohydrate transport and metabolism]
Probab=98.19 E-value=6.5e-05 Score=66.55 Aligned_cols=42 Identities=29% Similarity=0.491 Sum_probs=34.3
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHHHhCCCeeehHHHHHHHH
Q 022951 72 GKHVQWVFLGCPGVGKGTYASRLSNLLGVPHIATGDLLDEIV 113 (289)
Q Consensus 72 ~~~~~Ivl~GppGsGKSTlak~La~~lg~~~i~~d~l~~~~l 113 (289)
..|.+|+|-|+||+||||+|..||..+|..++-..|.+++.|
T Consensus 87 ~~p~IILIGGasGVGkStIA~ElA~rLgI~~visTD~IREvl 128 (299)
T COG2074 87 KRPLIILIGGASGVGKSTIAGELARRLGIRSVISTDSIREVL 128 (299)
T ss_pred CCCeEEEecCCCCCChhHHHHHHHHHcCCceeecchHHHHHH
Confidence 357888899999999999999999999998866556664443
No 164
>PRK15453 phosphoribulokinase; Provisional
Probab=98.14 E-value=1.6e-05 Score=72.02 Aligned_cols=38 Identities=16% Similarity=0.270 Sum_probs=31.7
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHHHhC-----CCeeehHHHH
Q 022951 72 GKHVQWVFLGCPGVGKGTYASRLSNLLG-----VPHIATGDLL 109 (289)
Q Consensus 72 ~~~~~Ivl~GppGsGKSTlak~La~~lg-----~~~i~~d~l~ 109 (289)
.++++|.|+|.|||||||+++.|++.++ ..+++.|++.
T Consensus 3 ~k~piI~ItG~SGsGKTTva~~l~~if~~~~~~~~vi~~D~yh 45 (290)
T PRK15453 3 AKHPIIAVTGSSGAGTTTVKRAFEKIFRRENINAAVVEGDSFH 45 (290)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHhhcCCCeEEEeccccc
Confidence 3567899999999999999999998774 4567777766
No 165
>PF01745 IPT: Isopentenyl transferase; InterPro: IPR002648 Isopentenyl transferase / dimethylallyl transferase synthesizes isopentenyladensosine 5'-monophosphate, a cytokinin that induces shoot formation on host plants infected with the Ti plasmid [].; GO: 0004161 dimethylallyltranstransferase activity, 0009058 biosynthetic process; PDB: 2ZE8_C 2ZE5_A 2ZE7_A 2ZE6_A.
Probab=98.10 E-value=2.2e-05 Score=68.03 Aligned_cols=104 Identities=23% Similarity=0.296 Sum_probs=58.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhCCCeeehHHHH--------------------------HHHHHcCCccCHHHHHHHH
Q 022951 75 VQWVFLGCPGVGKGTYASRLSNLLGVPHIATGDLL--------------------------DEIVSQGKLVSDEIIINLL 128 (289)
Q Consensus 75 ~~Ivl~GppGsGKSTlak~La~~lg~~~i~~d~l~--------------------------~~~l~~g~~v~~~~~~~ll 128 (289)
.+++|.||+|+|||.+|-.||+++|.+.|+.|.+. ...+..|. ++.+.....+
T Consensus 2 ~v~~i~GpT~tGKt~~ai~lA~~~g~pvI~~Driq~y~~l~v~Sgrp~~~el~~~~RiyL~~r~l~~G~-i~a~ea~~~L 80 (233)
T PF01745_consen 2 KVYLIVGPTGTGKTALAIALAQKTGAPVISLDRIQCYPELSVGSGRPTPSELKGTRRIYLDDRPLSDGI-INAEEAHERL 80 (233)
T ss_dssp EEEEEE-STTSSHHHHHHHHHHHH--EEEEE-SGGG-GGGTTTTT---SGGGTT-EEEES----GGG-S---HHHHHHHH
T ss_pred cEEEEECCCCCChhHHHHHHHHHhCCCEEEecceecccccccccCCCCHHHHcccceeeeccccccCCC-cCHHHHHHHH
Confidence 46789999999999999999999999999987776 12234444 4555555566
Q ss_pred HHHHHcccccCCceEEEcCcccH---HHHhhcCC----CcEEEEEecCHH-HHHHHHhccc
Q 022951 129 SKRLEAGEAKGEAGFILDGFPRT---EILEGVTD----IDLVINLKLREE-ALLAKCLGRR 181 (289)
Q Consensus 129 ~~~l~~~~~~~~~g~Ildg~p~~---~~l~~~~~----~d~vI~Ld~~~e-~l~~Rl~~R~ 181 (289)
...+..... ++++|++|-.-+ .+++.... .-.+.++.++.+ .-+.|..+|-
T Consensus 81 i~~v~~~~~--~~~~IlEGGSISLl~~m~~~~~w~~~f~w~i~rl~l~d~~~f~~ra~~Rv 139 (233)
T PF01745_consen 81 ISEVNSYSA--HGGLILEGGSISLLNCMAQDPYWSLDFRWHIRRLRLPDEEVFMARAKRRV 139 (233)
T ss_dssp HHHHHTTTT--SSEEEEEE--HHHHHHHHH-TTTSSSSEEEEEE-----HHHHHHHHHHHH
T ss_pred HHHHHhccc--cCceEEeCchHHHHHHHHhcccccCCCeEEEEEEECCChHHHHHHHHHHH
Confidence 666665544 579999985444 33332221 224677777764 4555666553
No 166
>COG1660 Predicted P-loop-containing kinase [General function prediction only]
Probab=98.07 E-value=0.00018 Score=63.96 Aligned_cols=96 Identities=21% Similarity=0.266 Sum_probs=59.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhCCCeeehHHHHHHHHHcCCccCHHHHHHHHHHHHHcccccCCceEEEcC----ccc
Q 022951 75 VQWVFLGCPGVGKGTYASRLSNLLGVPHIATGDLLDEIVSQGKLVSDEIIINLLSKRLEAGEAKGEAGFILDG----FPR 150 (289)
Q Consensus 75 ~~Ivl~GppGsGKSTlak~La~~lg~~~i~~d~l~~~~l~~g~~v~~~~~~~ll~~~l~~~~~~~~~g~Ildg----~p~ 150 (289)
.+|+|+|.+|||||+-.+.| +.+|+..++. +|.+.+-++++-..........-.+++|- |..
T Consensus 2 ~lvIVTGlSGAGKsvAl~~l-EDlGyycvDN-------------LPp~Llp~~~~~~~~~~~~~~kvAv~iDiRs~~~~~ 67 (286)
T COG1660 2 RLVIVTGLSGAGKSVALRVL-EDLGYYCVDN-------------LPPQLLPKLADLMLTLESRITKVAVVIDVRSREFFG 67 (286)
T ss_pred cEEEEecCCCCcHHHHHHHH-HhcCeeeecC-------------CCHHHHHHHHHHHhhcccCCceEEEEEecccchhHH
Confidence 46889999999999999888 5578777764 34444444444222111111123677874 222
Q ss_pred H--HHHhhcCCC----cEEEEEecCHHHHHHHHh-cccccc
Q 022951 151 T--EILEGVTDI----DLVINLKLREEALLAKCL-GRRICS 184 (289)
Q Consensus 151 ~--~~l~~~~~~----d~vI~Ld~~~e~l~~Rl~-~R~~~~ 184 (289)
. +.+..+... -.++||+++.+++++|.. .|+.|+
T Consensus 68 ~l~~~l~~l~~~~~~~~~iLFLeA~~~~Lv~RY~etRR~HP 108 (286)
T COG1660 68 DLEEVLDELKDNGDIDPRVLFLEADDETLVRRYSETRRSHP 108 (286)
T ss_pred HHHHHHHHHHhcCCCCceEEEEECchhHHHHHHhhhhhcCC
Confidence 2 333333211 359999999999999986 466664
No 167
>KOG0707 consensus Guanylate kinase [Nucleotide transport and metabolism]
Probab=98.04 E-value=1.3e-05 Score=70.06 Aligned_cols=60 Identities=22% Similarity=0.252 Sum_probs=39.6
Q ss_pred ccCCCcHHHHHHHHHHHHHhchHHHHHHHHcCcEEEEeCCCCcccHHHHHHHHhccCCcchhh
Q 022951 223 TRSDDKEEVVRERLRIYNEKSRPVEEFYRRRGKLLEFDLPGGIPESWPKLLQALNLEDPEDKQ 285 (289)
Q Consensus 223 ~r~~d~~~~~~~rl~~y~~~~~~l~~~y~~~~~l~~id~~~~~~ev~~~i~~~l~~~~~~~~~ 285 (289)
.|..++++.+.+|++.........+.-+. ..+..++. .+.++...++..++..++.+..|
T Consensus 169 ~rgte~~~~l~~r~~sa~~e~~~~~~~g~--~d~~~~ns-~~lee~~kel~~~~~~~~~~~~~ 228 (231)
T KOG0707|consen 169 ARGTETEESLLKRLKSAEEEFEILENSGS--FDLVIVNS-DRLEEAYKELEIFISSDDKESHQ 228 (231)
T ss_pred ccCcchHHHHHHHHHhhhhhhccccCCcc--ccceecCC-CchhhhhhhhhhhhhHHHHhhhh
Confidence 33467788999999966666655543111 12334443 78999999999998877655444
No 168
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=98.03 E-value=1.2e-05 Score=66.92 Aligned_cols=38 Identities=32% Similarity=0.536 Sum_probs=26.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCeeehHHHHHHHHHcC
Q 022951 76 QWVFLGCPGVGKGTYASRLSNLLGVPHIATGDLLDEIVSQG 116 (289)
Q Consensus 76 ~Ivl~GppGsGKSTlak~La~~lg~~~i~~d~l~~~~l~~g 116 (289)
+|+|+|++|+||||+++.|++. |++++ .+..+.++..+
T Consensus 1 rI~i~G~~stGKTTL~~~L~~~-g~~~v--~E~ar~~~~~~ 38 (163)
T PF13521_consen 1 RIVITGGPSTGKTTLIEALAAR-GYPVV--PEYAREIIEEG 38 (163)
T ss_dssp -EEEE--TTSHHHHHHHHHHHH-T-EEE----TTHHHHHHS
T ss_pred CEEEECCCCCCHHHHHHHHHHc-CCeEE--eecHHHHHHHh
Confidence 5899999999999999999998 88877 45555555443
No 169
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=98.02 E-value=2.1e-05 Score=66.40 Aligned_cols=31 Identities=35% Similarity=0.427 Sum_probs=26.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhC--CCeeeh
Q 022951 75 VQWVFLGCPGVGKGTYASRLSNLLG--VPHIAT 105 (289)
Q Consensus 75 ~~Ivl~GppGsGKSTlak~La~~lg--~~~i~~ 105 (289)
|+|+|+|+|||||||+|..|+..++ +.|+.+
T Consensus 2 ~~ili~G~~~sGKS~~a~~l~~~~~~~~~~iat 34 (170)
T PRK05800 2 MLILVTGGARSGKSRFAERLAAQSGLQVLYIAT 34 (170)
T ss_pred CEEEEECCCCccHHHHHHHHHHHcCCCcEeCcC
Confidence 5789999999999999999999987 445554
No 170
>PRK06761 hypothetical protein; Provisional
Probab=97.99 E-value=4.2e-05 Score=69.59 Aligned_cols=30 Identities=33% Similarity=0.464 Sum_probs=25.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhCCCeee
Q 022951 75 VQWVFLGCPGVGKGTYASRLSNLLGVPHIA 104 (289)
Q Consensus 75 ~~Ivl~GppGsGKSTlak~La~~lg~~~i~ 104 (289)
++|+|+|+|||||||+++.|++.+....++
T Consensus 4 ~lIvI~G~~GsGKTTla~~L~~~L~~~g~~ 33 (282)
T PRK06761 4 KLIIIEGLPGFGKSTTAKMLNDILSQNGIE 33 (282)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhcCcCceE
Confidence 579999999999999999999998754443
No 171
>PRK00091 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Reviewed
Probab=97.98 E-value=1.2e-05 Score=74.18 Aligned_cols=36 Identities=22% Similarity=0.216 Sum_probs=32.8
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHHHhCCCeeehHHHH
Q 022951 74 HVQWVFLGCPGVGKGTYASRLSNLLGVPHIATGDLL 109 (289)
Q Consensus 74 ~~~Ivl~GppGsGKSTlak~La~~lg~~~i~~d~l~ 109 (289)
+.+|+|+||+|||||++|..|++.++..+|+.|.+.
T Consensus 4 ~~~i~i~GptgsGKt~la~~la~~~~~~iis~Ds~Q 39 (307)
T PRK00091 4 PKVIVIVGPTASGKTALAIELAKRLNGEIISADSMQ 39 (307)
T ss_pred ceEEEEECCCCcCHHHHHHHHHHhCCCcEEeccccc
Confidence 468999999999999999999999999999998853
No 172
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=97.98 E-value=5.8e-06 Score=65.42 Aligned_cols=33 Identities=39% Similarity=0.678 Sum_probs=27.3
Q ss_pred EEEEcCCCCCHHHHHHHHHHHhCCCee--ehHHHH
Q 022951 77 WVFLGCPGVGKGTYASRLSNLLGVPHI--ATGDLL 109 (289)
Q Consensus 77 Ivl~GppGsGKSTlak~La~~lg~~~i--~~d~l~ 109 (289)
|+|.||||+||||+++.|++.++.+++ +..++.
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~~~~~~i~~~~~~ 35 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLGFPFIEIDGSELI 35 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTTSEEEEEETTHHH
T ss_pred CEEECcCCCCeeHHHHHHHhhcccccccccccccc
Confidence 689999999999999999999997664 444443
No 173
>PLN02840 tRNA dimethylallyltransferase
Probab=97.95 E-value=1.7e-05 Score=75.77 Aligned_cols=37 Identities=27% Similarity=0.276 Sum_probs=32.9
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhCCCeeehHHHH
Q 022951 73 KHVQWVFLGCPGVGKGTYASRLSNLLGVPHIATGDLL 109 (289)
Q Consensus 73 ~~~~Ivl~GppGsGKSTlak~La~~lg~~~i~~d~l~ 109 (289)
+.++|+|.||+||||||++..|+++++..+|+.|.+.
T Consensus 20 ~~~vi~I~GptgsGKTtla~~La~~~~~~iis~Ds~q 56 (421)
T PLN02840 20 KEKVIVISGPTGAGKSRLALELAKRLNGEIISADSVQ 56 (421)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHCCCCeEeccccc
Confidence 4568999999999999999999999999999887654
No 174
>KOG3308 consensus Uncharacterized protein of the uridine kinase family [Nucleotide transport and metabolism]
Probab=97.91 E-value=2.4e-05 Score=66.97 Aligned_cols=105 Identities=21% Similarity=0.214 Sum_probs=63.9
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHHHh-CCCeeehHHHHH------------------------H-------HHHcCCccCH
Q 022951 74 HVQWVFLGCPGVGKGTYASRLSNLL-GVPHIATGDLLD------------------------E-------IVSQGKLVSD 121 (289)
Q Consensus 74 ~~~Ivl~GppGsGKSTlak~La~~l-g~~~i~~d~l~~------------------------~-------~l~~g~~v~~ 121 (289)
..+|.|.|.+.|||||+|+.|...+ |+..|+-||..+ . .+......++
T Consensus 4 ~~ivgiSG~TnsGKTTLak~l~~~f~~~~lIhqDDFyKp~~Ei~v~~~n~~~wd~~esLdm~~fl~~ia~~l~~~~~~~~ 83 (225)
T KOG3308|consen 4 TLIVGISGCTNSGKTTLAKSLHRFFPGCSLIHQDDFYKPENEIEVDYNNIDNWDLLESLDMEKFLEKIATWLDSRHNAPE 83 (225)
T ss_pred EEEEEeecccCCCHhHHHHHHHHHccCCeeeccccccCchhhhhcccCCcchhcchhhhhHHHHHHHHHHHhcCccccch
Confidence 4677899999999999999999988 577788877771 0 1111111111
Q ss_pred HHHHHHH-----HHHHHc--ccccCCceEEEcCcccH--HHHhhcCCCcEEEEEecCHHHHHHHHhccc
Q 022951 122 EIIINLL-----SKRLEA--GEAKGEAGFILDGFPRT--EILEGVTDIDLVINLKLREEALLAKCLGRR 181 (289)
Q Consensus 122 ~~~~~ll-----~~~l~~--~~~~~~~g~Ildg~p~~--~~l~~~~~~d~vI~Ld~~~e~l~~Rl~~R~ 181 (289)
....++ ++.... .......-+|+|||.-. .-+.. ..|..|++..+-+++.+|-..|.
T Consensus 84 -ar~~~v~~~~~~~~~~~~q~~~~~~~iviidGfmiy~y~p~~~--~~d~~im~~~~y~~~krRr~~Rt 149 (225)
T KOG3308|consen 84 -AREHLVSYANFEHYAQQFQIKAYKNHIVIIDGFMIYNYKPQVD--LFDRIIMLTLDYETCKRRREART 149 (225)
T ss_pred -HhhhhhhhhHHHHHhhhcCcccccCcEEEEecceEEecchhhh--hhhhheeeeccHHHHHHhhcccc
Confidence 000111 111111 11111446899997654 11111 25889999999999998888774
No 175
>PF13189 Cytidylate_kin2: Cytidylate kinase-like family; PDB: 3FDI_A.
Probab=97.90 E-value=0.00019 Score=60.97 Aligned_cols=102 Identities=19% Similarity=0.199 Sum_probs=56.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCeeehHHHHHHHHHc-----------C----------------------CccCHH
Q 022951 76 QWVFLGCPGVGKGTYASRLSNLLGVPHIATGDLLDEIVSQ-----------G----------------------KLVSDE 122 (289)
Q Consensus 76 ~Ivl~GppGsGKSTlak~La~~lg~~~i~~d~l~~~~l~~-----------g----------------------~~v~~~ 122 (289)
+|.|.|..|||++++|+.||++||+++++- +++.+.... . ....++
T Consensus 1 IITIsr~~Gsgg~~Ia~~LA~~Lg~~~~d~-~ii~~~a~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (179)
T PF13189_consen 1 IITISRQYGSGGREIAERLAEKLGYPYYDR-EIIEEAAKESGISEEEFEEFDEKKPFNSFLYDFFRGMFPGSFEDHPDDD 79 (179)
T ss_dssp EEEEEE-TTSSHHHHHHHHHHHCT--EE-H-HHHHHCT------------SS-HHH--HH---HHS--------------
T ss_pred CEEECCCCCCChHHHHHHHHHHcCCccCCH-HHHHHHHHHccCCHHHHHHHhccccCcchhhhhhccccccccccccHHH
Confidence 588999999999999999999999999998 665111100 0 001111
Q ss_pred HHHHHHHHHHHcccccCCceEEEcCcccHHHHhhcCCCcEEEEEecCHHHHHHHHhccc
Q 022951 123 IIINLLSKRLEAGEAKGEAGFILDGFPRTEILEGVTDIDLVINLKLREEALLAKCLGRR 181 (289)
Q Consensus 123 ~~~~ll~~~l~~~~~~~~~g~Ildg~p~~~~l~~~~~~d~vI~Ld~~~e~l~~Rl~~R~ 181 (289)
.+.....+.+..... ..++|+-|......++.. +..+-|||.+|.+..++|+..|.
T Consensus 80 ~~~~~~~~~i~~la~--~~~~Vi~GR~a~~il~~~-~~~l~V~i~A~~~~Rv~ri~~~~ 135 (179)
T PF13189_consen 80 KIFRAQSEIIRELAA--KGNCVIVGRCANYILRDI-PNVLHVFIYAPLEFRVERIMERE 135 (179)
T ss_dssp HHHHHHHHHHHHHHH-----EEEESTTHHHHTTT--TTEEEEEEEE-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhc--cCCEEEEecCHhhhhCCC-CCeEEEEEECCHHHHHHHHHHHc
Confidence 222222223332221 235666664433233332 24689999999999999999883
No 176
>PLN02748 tRNA dimethylallyltransferase
Probab=97.84 E-value=5.4e-05 Score=73.36 Aligned_cols=38 Identities=29% Similarity=0.364 Sum_probs=33.7
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHHHhCCCeeehHHHH
Q 022951 72 GKHVQWVFLGCPGVGKGTYASRLSNLLGVPHIATGDLL 109 (289)
Q Consensus 72 ~~~~~Ivl~GppGsGKSTlak~La~~lg~~~i~~d~l~ 109 (289)
.++.+|+|+||+|||||++|..||+.++..+|+.|.+.
T Consensus 20 ~~~~~i~i~GptgsGKs~la~~la~~~~~eii~~DsmQ 57 (468)
T PLN02748 20 GKAKVVVVMGPTGSGKSKLAVDLASHFPVEIINADSMQ 57 (468)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHhcCeeEEcCchhe
Confidence 45568999999999999999999999999999998644
No 177
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=97.84 E-value=6.8e-05 Score=60.91 Aligned_cols=24 Identities=38% Similarity=0.448 Sum_probs=21.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHhC
Q 022951 76 QWVFLGCPGVGKGTYASRLSNLLG 99 (289)
Q Consensus 76 ~Ivl~GppGsGKSTlak~La~~lg 99 (289)
.|+|+||+||||||+++.|++.+.
T Consensus 1 ~i~i~GpsGsGKstl~~~L~~~~~ 24 (137)
T cd00071 1 LIVLSGPSGVGKSTLLKRLLEEFD 24 (137)
T ss_pred CEEEECCCCCCHHHHHHHHHhcCC
Confidence 378999999999999999999864
No 178
>PHA03136 thymidine kinase; Provisional
Probab=97.73 E-value=0.0021 Score=60.44 Aligned_cols=24 Identities=13% Similarity=0.101 Sum_probs=21.9
Q ss_pred CCcEEEEEecCHHHHHHHHhcccc
Q 022951 159 DIDLVINLKLREEALLAKCLGRRI 182 (289)
Q Consensus 159 ~~d~vI~Ld~~~e~l~~Rl~~R~~ 182 (289)
.+|.+|||+++.+++.+|+.+|..
T Consensus 191 ~pD~IIyL~l~~e~~~~RI~kRgR 214 (378)
T PHA03136 191 HGGNIVIMDLDECEHAERIIARGR 214 (378)
T ss_pred CCCEEEEEeCCHHHHHHHHHHcCC
Confidence 488999999999999999999954
No 179
>cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. PRK catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=97.72 E-value=7.1e-05 Score=67.38 Aligned_cols=34 Identities=12% Similarity=0.228 Sum_probs=28.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHhC-----CCeeehHHHH
Q 022951 76 QWVFLGCPGVGKGTYASRLSNLLG-----VPHIATGDLL 109 (289)
Q Consensus 76 ~Ivl~GppGsGKSTlak~La~~lg-----~~~i~~d~l~ 109 (289)
+|.|+|++||||||+++.|++.++ ..+++.|++.
T Consensus 1 IIgItG~SGSGKTTv~~~l~~~l~~~g~~v~vI~~D~yy 39 (277)
T cd02029 1 VIAVTGSSGAGTTTVKRAFEHIFAREGIHPAVVEGDSFH 39 (277)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHhcCCceEEEeccccc
Confidence 478999999999999999998774 4567887777
No 180
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=97.71 E-value=0.00026 Score=57.94 Aligned_cols=67 Identities=16% Similarity=0.203 Sum_probs=39.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhCC----Ceeeh-HHHHHHHHHcCCccCHHHHHHHHHHHHHcccccCCceEEEcC
Q 022951 75 VQWVFLGCPGVGKGTYASRLSNLLGV----PHIAT-GDLLDEIVSQGKLVSDEIIINLLSKRLEAGEAKGEAGFILDG 147 (289)
Q Consensus 75 ~~Ivl~GppGsGKSTlak~La~~lg~----~~i~~-d~l~~~~l~~g~~v~~~~~~~ll~~~l~~~~~~~~~g~Ildg 147 (289)
.+|.|+|+.|||||||+++|-....- ..+.. +..+ --.|+.+...++...+...-...+.. .++.|.
T Consensus 2 krimliG~~g~GKTTL~q~L~~~~~~~~KTq~i~~~~~~I---DTPGEyiE~~~~y~aLi~ta~dad~V---~ll~da 73 (143)
T PF10662_consen 2 KRIMLIGPSGSGKTTLAQALNGEEIRYKKTQAIEYYDNTI---DTPGEYIENPRFYHALIVTAQDADVV---LLLQDA 73 (143)
T ss_pred ceEEEECCCCCCHHHHHHHHcCCCCCcCccceeEecccEE---ECChhheeCHHHHHHHHHHHhhCCEE---EEEecC
Confidence 57899999999999999999764310 01110 0111 11467777676666654444443332 556664
No 181
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.70 E-value=0.00011 Score=72.22 Aligned_cols=104 Identities=22% Similarity=0.339 Sum_probs=63.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhCCCeeeh--HHHH-----------HHHHHcCCc-------c-------C-HHHHHH
Q 022951 75 VQWVFLGCPGVGKGTYASRLSNLLGVPHIAT--GDLL-----------DEIVSQGKL-------V-------S-DEIIIN 126 (289)
Q Consensus 75 ~~Ivl~GppGsGKSTlak~La~~lg~~~i~~--d~l~-----------~~~l~~g~~-------v-------~-~~~~~~ 126 (289)
.=++|-||||||||.+|+.||.++|++++++ .+++ ++.++.... + | .++-.+
T Consensus 224 rGvLlHGPPGCGKT~lA~AiAgel~vPf~~isApeivSGvSGESEkkiRelF~~A~~~aPcivFiDeIDAI~pkRe~aqr 303 (802)
T KOG0733|consen 224 RGVLLHGPPGCGKTSLANAIAGELGVPFLSISAPEIVSGVSGESEKKIRELFDQAKSNAPCIVFIDEIDAITPKREEAQR 303 (802)
T ss_pred CceeeeCCCCccHHHHHHHHhhhcCCceEeecchhhhcccCcccHHHHHHHHHHHhccCCeEEEeecccccccchhhHHH
Confidence 4478999999999999999999999999864 3444 222211110 0 0 011112
Q ss_pred HHHHHH--------HcccccC--CceEEEcC-c--ccH--HHHhhcCCCcEEEEEecCHHHHHHHHh
Q 022951 127 LLSKRL--------EAGEAKG--EAGFILDG-F--PRT--EILEGVTDIDLVINLKLREEALLAKCL 178 (289)
Q Consensus 127 ll~~~l--------~~~~~~~--~~g~Ildg-~--p~~--~~l~~~~~~d~vI~Ld~~~e~l~~Rl~ 178 (289)
.++.++ ....... +.+|++-| . |.. ..|++..++|.=|.|.+|.+...+++.
T Consensus 304 eMErRiVaQLlt~mD~l~~~~~~g~~VlVIgATnRPDslDpaLRRaGRFdrEI~l~vP~e~aR~~IL 370 (802)
T KOG0733|consen 304 EMERRIVAQLLTSMDELSNEKTKGDPVLVIGATNRPDSLDPALRRAGRFDREICLGVPSETAREEIL 370 (802)
T ss_pred HHHHHHHHHHHHhhhcccccccCCCCeEEEecCCCCcccCHHHhccccccceeeecCCchHHHHHHH
Confidence 222222 1111111 34555545 2 332 577788889999999999998888765
No 182
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.69 E-value=0.00023 Score=70.47 Aligned_cols=38 Identities=26% Similarity=0.416 Sum_probs=31.2
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHHHhCCCeeeh--HHHH
Q 022951 72 GKHVQWVFLGCPGVGKGTYASRLSNLLGVPHIAT--GDLL 109 (289)
Q Consensus 72 ~~~~~Ivl~GppGsGKSTlak~La~~lg~~~i~~--d~l~ 109 (289)
..|.-|++.||||||||++|+.||..-++.++++ -+++
T Consensus 466 ~ppkGVLlyGPPGC~KT~lAkalAne~~~nFlsvkgpEL~ 505 (693)
T KOG0730|consen 466 SPPKGVLLYGPPGCGKTLLAKALANEAGMNFLSVKGPELF 505 (693)
T ss_pred CCCceEEEECCCCcchHHHHHHHhhhhcCCeeeccCHHHH
Confidence 3456789999999999999999999988777764 4455
No 183
>TIGR00174 miaA tRNA isopentenyltransferase (miaA). Catalyzes the first step in the modification of an adenosine near the anticodon to 2-methylthio-N6-isopentyladenosine.
Probab=97.68 E-value=4.6e-05 Score=69.50 Aligned_cols=34 Identities=24% Similarity=0.324 Sum_probs=31.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCeeehHHHH
Q 022951 76 QWVFLGCPGVGKGTYASRLSNLLGVPHIATGDLL 109 (289)
Q Consensus 76 ~Ivl~GppGsGKSTlak~La~~lg~~~i~~d~l~ 109 (289)
+|+|+||+|||||+++..|++.++..+|+.|.+.
T Consensus 1 vi~i~G~t~~GKs~la~~l~~~~~~~iis~Ds~q 34 (287)
T TIGR00174 1 VIFIMGPTAVGKSQLAIQLAKKLNAEIISVDSMQ 34 (287)
T ss_pred CEEEECCCCCCHHHHHHHHHHhCCCcEEEechhh
Confidence 3789999999999999999999999999998865
No 184
>CHL00195 ycf46 Ycf46; Provisional
Probab=97.68 E-value=0.00035 Score=68.38 Aligned_cols=33 Identities=21% Similarity=0.326 Sum_probs=28.8
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhCCCeeeh
Q 022951 73 KHVQWVFLGCPGVGKGTYASRLSNLLGVPHIAT 105 (289)
Q Consensus 73 ~~~~Ivl~GppGsGKSTlak~La~~lg~~~i~~ 105 (289)
.+.-|+|.||||||||.+|+.+|..++.+++.+
T Consensus 258 ~pkGILL~GPpGTGKTllAkaiA~e~~~~~~~l 290 (489)
T CHL00195 258 TPRGLLLVGIQGTGKSLTAKAIANDWQLPLLRL 290 (489)
T ss_pred CCceEEEECCCCCcHHHHHHHHHHHhCCCEEEE
Confidence 345689999999999999999999999887654
No 185
>PF08303 tRNA_lig_kinase: tRNA ligase kinase domain; InterPro: IPR015966 This entry represents a kinase domain found in fungal tRNA ligases []. Please see the following relevant references: [, ].; GO: 0003972 RNA ligase (ATP) activity, 0005524 ATP binding, 0006388 tRNA splicing, via endonucleolytic cleavage and ligation
Probab=97.62 E-value=0.00094 Score=55.72 Aligned_cols=60 Identities=30% Similarity=0.365 Sum_probs=41.5
Q ss_pred EEEEcCCCCCHHHHHHHHHHHhC-CCeeehHHHHHHHHHcCCccCHHHHHHHHHHHHHcccccCCceEEEcC
Q 022951 77 WVFLGCPGVGKGTYASRLSNLLG-VPHIATGDLLDEIVSQGKLVSDEIIINLLSKRLEAGEAKGEAGFILDG 147 (289)
Q Consensus 77 Ivl~GppGsGKSTlak~La~~lg-~~~i~~d~l~~~~l~~g~~v~~~~~~~ll~~~l~~~~~~~~~g~Ildg 147 (289)
|+=++.+||||||++..|+..|| +-|+-.|++- ++ ....+.+...+.+.... ...||.|.
T Consensus 2 lvPIAtiGCGKTTva~aL~~LFg~wgHvQnDnI~------~k--~~~~f~~~~l~~L~~~~---~~vViaDR 62 (168)
T PF08303_consen 2 LVPIATIGCGKTTVALALSNLFGEWGHVQNDNIT------GK--RKPKFIKAVLELLAKDT---HPVVIADR 62 (168)
T ss_pred EeeecCCCcCHHHHHHHHHHHcCCCCccccCCCC------CC--CHHHHHHHHHHHHhhCC---CCEEEEeC
Confidence 34478999999999999999999 9999998874 33 22333333334443222 45788885
No 186
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=97.61 E-value=5.4e-05 Score=66.37 Aligned_cols=30 Identities=40% Similarity=0.574 Sum_probs=24.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhCCCeee
Q 022951 75 VQWVFLGCPGVGKGTYASRLSNLLGVPHIA 104 (289)
Q Consensus 75 ~~Ivl~GppGsGKSTlak~La~~lg~~~i~ 104 (289)
..++|.||||+||||+|+.||+.++..+..
T Consensus 51 ~h~lf~GPPG~GKTTLA~IIA~e~~~~~~~ 80 (233)
T PF05496_consen 51 DHMLFYGPPGLGKTTLARIIANELGVNFKI 80 (233)
T ss_dssp -EEEEESSTTSSHHHHHHHHHHHCT--EEE
T ss_pred ceEEEECCCccchhHHHHHHHhccCCCeEe
Confidence 457899999999999999999999876643
No 187
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=97.60 E-value=6.5e-05 Score=62.34 Aligned_cols=27 Identities=30% Similarity=0.476 Sum_probs=24.6
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhC
Q 022951 73 KHVQWVFLGCPGVGKGTYASRLSNLLG 99 (289)
Q Consensus 73 ~~~~Ivl~GppGsGKSTlak~La~~lg 99 (289)
..|+|+|+|+||+||||++++|++.+.
T Consensus 4 ~~mki~ITG~PGvGKtTl~~ki~e~L~ 30 (179)
T COG1618 4 MAMKIFITGRPGVGKTTLVLKIAEKLR 30 (179)
T ss_pred cceEEEEeCCCCccHHHHHHHHHHHHH
Confidence 368999999999999999999999873
No 188
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=97.59 E-value=6.8e-05 Score=60.46 Aligned_cols=28 Identities=46% Similarity=0.725 Sum_probs=25.3
Q ss_pred EEEEcCCCCCHHHHHHHHHHHhCCCeee
Q 022951 77 WVFLGCPGVGKGTYASRLSNLLGVPHIA 104 (289)
Q Consensus 77 Ivl~GppGsGKSTlak~La~~lg~~~i~ 104 (289)
|+|.|+||+|||++++.|++.++.+++.
T Consensus 2 vlL~G~~G~GKt~l~~~la~~~~~~~~~ 29 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLARELAALLGRPVIR 29 (139)
T ss_dssp EEEEESSSSSHHHHHHHHHHHHTCEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHhhcceEE
Confidence 6899999999999999999999877654
No 189
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.59 E-value=0.00091 Score=67.13 Aligned_cols=27 Identities=37% Similarity=0.599 Sum_probs=24.9
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHHHhCC
Q 022951 74 HVQWVFLGCPGVGKGTYASRLSNLLGV 100 (289)
Q Consensus 74 ~~~Ivl~GppGsGKSTlak~La~~lg~ 100 (289)
++.++|+|++|+||||+++.|++.+++
T Consensus 38 pHA~LFtGP~GvGKTTLAriLAkaLnC 64 (700)
T PRK12323 38 HHAYLFTGTRGVGKTTLSRILAKSLNC 64 (700)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 467899999999999999999999986
No 190
>COG0324 MiaA tRNA delta(2)-isopentenylpyrophosphate transferase [Translation, ribosomal structure and biogenesis]
Probab=97.58 E-value=0.00014 Score=66.81 Aligned_cols=36 Identities=25% Similarity=0.218 Sum_probs=33.8
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHHHhCCCeeehHHHH
Q 022951 74 HVQWVFLGCPGVGKGTYASRLSNLLGVPHIATGDLL 109 (289)
Q Consensus 74 ~~~Ivl~GppGsGKSTlak~La~~lg~~~i~~d~l~ 109 (289)
+..|+|+||.+||||.+|-.||+++|...|+.|.+.
T Consensus 3 ~~~i~I~GPTAsGKT~lai~LAk~~~~eIIs~DSmQ 38 (308)
T COG0324 3 PKLIVIAGPTASGKTALAIALAKRLGGEIISLDSMQ 38 (308)
T ss_pred ccEEEEECCCCcCHHHHHHHHHHHcCCcEEecchhh
Confidence 567999999999999999999999999999998877
No 191
>PRK09169 hypothetical protein; Validated
Probab=97.57 E-value=0.00061 Score=75.19 Aligned_cols=98 Identities=12% Similarity=-0.020 Sum_probs=68.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhCCCeeehHHHHHH--------H-HHcCCccCHHHHHHHHHHHHHcccccCCceEEE
Q 022951 75 VQWVFLGCPGVGKGTYASRLSNLLGVPHIATGDLLDE--------I-VSQGKLVSDEIIINLLSKRLEAGEAKGEAGFIL 145 (289)
Q Consensus 75 ~~Ivl~GppGsGKSTlak~La~~lg~~~i~~d~l~~~--------~-l~~g~~v~~~~~~~ll~~~l~~~~~~~~~g~Il 145 (289)
..|+|+|.+|+||||+++.|++.+++.++++|..+.+ + ...| .+.+.....+.+.+.. ..||=
T Consensus 2111 ~aIvLIG~MGaGKTTIGr~LA~~Lg~~FiDtD~kIeks~GrkI~rIFa~eG--~FRe~Eaa~V~Dllr~------~vVLS 2182 (2316)
T PRK09169 2111 QARRIEREVGPLLQALLQKLAGGLRVDKPHSVRKIAKKIGKKIARIQALRG--LSPEQAAARVRDALRW------EVVLP 2182 (2316)
T ss_pred cccceeeCCCCCHhHHHHHHHHHhCCCccccHHHHHHHhCCCHHHHHHhcC--chHHHHHHHHHHHhcC------CeEEe
Confidence 4689999999999999999999999999999888832 1 2233 4445455555554421 12333
Q ss_pred cC-cccH--HHHhhcCCCcEEEEEecCHHHHHHHHhcc
Q 022951 146 DG-FPRT--EILEGVTDIDLVINLKLREEALLAKCLGR 180 (289)
Q Consensus 146 dg-~p~~--~~l~~~~~~d~vI~Ld~~~e~l~~Rl~~R 180 (289)
.| |... +....+....++||++.+.+.+.+|+.+.
T Consensus 2183 TGGGav~~~enr~~L~~~GlvV~L~an~~tl~~Rty~g 2220 (2316)
T PRK09169 2183 AEGFGAAVEQARQALGAKGLRVMRINNGFAAPDTTYAG 2220 (2316)
T ss_pred CCCCcccCHHHHHHHHHCCEEEEEECCHHHHHHHhccC
Confidence 33 3222 44455555689999999999999999644
No 192
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.57 E-value=6.2e-05 Score=58.88 Aligned_cols=28 Identities=39% Similarity=0.554 Sum_probs=24.3
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHHHhCCC
Q 022951 74 HVQWVFLGCPGVGKGTYASRLSNLLGVP 101 (289)
Q Consensus 74 ~~~Ivl~GppGsGKSTlak~La~~lg~~ 101 (289)
+..++|.|||||||||+++.|+..++..
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~~ 29 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELGPP 29 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccCCC
Confidence 3568999999999999999999988543
No 193
>TIGR03707 PPK2_P_aer polyphosphate kinase 2, PA0141 family. Members of this protein family are designated polyphosphate kinase 2 (PPK2) after the characterized protein in Pseudomonas aeruginosa. This family comprises one of three well-separated clades in the larger family described by Pfam model pfam03976. PA0141 from this family has been shown capable of operating in reverse, with GDP preferred (over ADP) as a substrate, producing GTP (or ATP) by transfer of a phosphate residue from polyphosphate. Most species with a member of this family also encode a polyphosphate kinase 1 (PPK1).
Probab=97.56 E-value=0.0034 Score=55.51 Aligned_cols=165 Identities=15% Similarity=0.085 Sum_probs=92.7
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhCCCeeehHHHHHHHHHcCCccCHHHHHHHHHHHHHcccccCCceEEEcC--ccc
Q 022951 73 KHVQWVFLGCPGVGKGTYASRLSNLLGVPHIATGDLLDEIVSQGKLVSDEIIINLLSKRLEAGEAKGEAGFILDG--FPR 150 (289)
Q Consensus 73 ~~~~Ivl~GppGsGKSTlak~La~~lg~~~i~~d~l~~~~l~~g~~v~~~~~~~ll~~~l~~~~~~~~~g~Ildg--~p~ 150 (289)
.+.+|+|.|..||||+.+.+.|.+.++-.++.+-.+ +.+...+.....+-..-...... |+..|+|+ |-.
T Consensus 30 ~~vlIv~eG~DaAGKg~~I~~l~~~lDPRg~~v~~~-------~~pt~eE~~~p~lwRfw~~lP~~-G~i~IF~rSwY~~ 101 (230)
T TIGR03707 30 ARVVIVFEGRDAAGKGGTIKRITEHLNPRGARVVAL-------PKPSDRERTQWYFQRYVQHLPAA-GEIVLFDRSWYNR 101 (230)
T ss_pred CCEEEEEeCCCCCCchHHHHHHHHhcCCCeeEEEeC-------CCCCHHHHcChHHHHHHHhCCCC-CeEEEEeCchhhh
Confidence 578999999999999999999999997555544111 22222222222222222222222 34445554 211
Q ss_pred H---------------------HHHhhc----CCCcEEEEEecCHHHHHHHHhcccccccCCCccccccccccCCCCCCC
Q 022951 151 T---------------------EILEGV----TDIDLVINLKLREEALLAKCLGRRICSECGGNYNVACIDIKGENGNPG 205 (289)
Q Consensus 151 ~---------------------~~l~~~----~~~d~vI~Ld~~~e~l~~Rl~~R~~~~~~g~~y~~~~~~~~~~~~~~~ 205 (289)
. ..+++. +-.-+-+||.++.++..+|+..|..++.+ .+.+
T Consensus 102 ~lv~rv~~~~~~~~~~~~~~~I~~FEr~L~~~G~~IlKfflhIsk~eQ~kRl~~r~~~p~k--~Wk~------------- 166 (230)
T TIGR03707 102 AGVERVMGFCTDEEYEEFLRQVPEFERMLVRDGIHLFKYWLSVSREEQLRRFKARIDDPLK--QWKL------------- 166 (230)
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEECCHHHHHHHHHHHhcCCcc--cccC-------------
Confidence 1 111111 12446799999999999999988755422 1111
Q ss_pred CCCCCCCCCCccccCccccCCCcHHHHHHHHHHHHHhchHHHHHHHH-cCcEEEEeCCCCc---ccHHHHHHHHhccCC
Q 022951 206 MYMGPLLPPPHCASKLITRSDDKEEVVRERLRIYNEKSRPVEEFYRR-RGKLLEFDLPGGI---PESWPKLLQALNLED 280 (289)
Q Consensus 206 ~~~~~~~~~~~~~~~L~~r~~d~~~~~~~rl~~y~~~~~~l~~~y~~-~~~l~~id~~~~~---~ev~~~i~~~l~~~~ 280 (289)
+...-.-.++.+.|...++.++..-+. ...|+.|+++..- -.+.+-|.+.|+...
T Consensus 167 --------------------~~~D~~~~~~yd~y~~a~e~~l~~T~t~~APW~iI~a~dk~~a~l~v~~~i~~~l~~~~ 225 (230)
T TIGR03707 167 --------------------SPMDLASLDRWDDYSRAKDEMFARTDTPEAPWTVVRSDDKKRARLNAIRHILSRLDYEG 225 (230)
T ss_pred --------------------CHHHHHHHHhHHHHHHHHHHHHHhcCCCCCCeEEEcCCCHHHHHHHHHHHHHHhCCCcC
Confidence 111223345566677766665554322 3469999988543 235555555555543
No 194
>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional
Probab=97.55 E-value=0.00043 Score=70.42 Aligned_cols=30 Identities=20% Similarity=0.362 Sum_probs=25.7
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHHHhCCCee
Q 022951 74 HVQWVFLGCPGVGKGTYASRLSNLLGVPHI 103 (289)
Q Consensus 74 ~~~Ivl~GppGsGKSTlak~La~~lg~~~i 103 (289)
.+.|++.|.||+||||+++.|++.+++..+
T Consensus 215 ~~~~~~vglp~~GKStia~~L~~~l~~~~~ 244 (664)
T PTZ00322 215 SLIVIMVGLPGRGKTYVARQIQRYFQWNGL 244 (664)
T ss_pred ceeEEecccCCCChhHHHHHHHHHHHhcCC
Confidence 468999999999999999999999854444
No 195
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=97.54 E-value=7.7e-05 Score=71.11 Aligned_cols=34 Identities=32% Similarity=0.490 Sum_probs=30.6
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHHHhCCCeeehHH
Q 022951 74 HVQWVFLGCPGVGKGTYASRLSNLLGVPHIATGD 107 (289)
Q Consensus 74 ~~~Ivl~GppGsGKSTlak~La~~lg~~~i~~d~ 107 (289)
+..|+|.||||||||++|+.||+.++.+++.++.
T Consensus 47 p~~ILLiGppG~GKT~lAraLA~~l~~~fi~vda 80 (441)
T TIGR00390 47 PKNILMIGPTGVGKTEIARRLAKLANAPFIKVEA 80 (441)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhCCeEEEeec
Confidence 4678999999999999999999999998888753
No 196
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=97.51 E-value=0.00053 Score=57.79 Aligned_cols=30 Identities=40% Similarity=0.501 Sum_probs=24.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHhC--CCeeeh
Q 022951 76 QWVFLGCPGVGKGTYASRLSNLLG--VPHIAT 105 (289)
Q Consensus 76 ~Ivl~GppGsGKSTlak~La~~lg--~~~i~~ 105 (289)
+++|+|++|||||++|..++...+ ..|+.+
T Consensus 1 ~~li~G~~~sGKS~~a~~~~~~~~~~~~y~at 32 (169)
T cd00544 1 IILVTGGARSGKSRFAERLAAELGGPVTYIAT 32 (169)
T ss_pred CEEEECCCCCCHHHHHHHHHHhcCCCeEEEEc
Confidence 368999999999999999998765 445554
No 197
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=97.51 E-value=0.0013 Score=66.94 Aligned_cols=28 Identities=32% Similarity=0.559 Sum_probs=25.0
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHHHhCCC
Q 022951 74 HVQWVFLGCPGVGKGTYASRLSNLLGVP 101 (289)
Q Consensus 74 ~~~Ivl~GppGsGKSTlak~La~~lg~~ 101 (289)
++.++|+|++|+||||+++.|++.+++.
T Consensus 38 ~HAyLFtGPpGvGKTTlAriLAKaLnCe 65 (830)
T PRK07003 38 HHAYLFTGTRGVGKTTLSRIFAKALNCE 65 (830)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhcCc
Confidence 4567899999999999999999999764
No 198
>KOG1384 consensus tRNA delta(2)-isopentenylpyrophosphate transferase [Translation, ribosomal structure and biogenesis]
Probab=97.50 E-value=0.00028 Score=64.67 Aligned_cols=37 Identities=24% Similarity=0.315 Sum_probs=33.0
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhCCCeeehHHHH
Q 022951 73 KHVQWVFLGCPGVGKGTYASRLSNLLGVPHIATGDLL 109 (289)
Q Consensus 73 ~~~~Ivl~GppGsGKSTlak~La~~lg~~~i~~d~l~ 109 (289)
+-.+|+|.|+.|||||-|+-.||.+++...|+.|.+.
T Consensus 6 k~KVvvI~G~TGsGKSrLaVdLA~rf~~EIINsDkmQ 42 (348)
T KOG1384|consen 6 KDKVVVIMGATGAGKSRLAVDLATRFPGEIINSDKMQ 42 (348)
T ss_pred CceEEEEecCCCCChhhhHHHHHHhCCceeeccccee
Confidence 4578999999999999999999999999999886655
No 199
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=97.50 E-value=0.0008 Score=69.73 Aligned_cols=28 Identities=29% Similarity=0.394 Sum_probs=24.9
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHHHhCCC
Q 022951 74 HVQWVFLGCPGVGKGTYASRLSNLLGVP 101 (289)
Q Consensus 74 ~~~Ivl~GppGsGKSTlak~La~~lg~~ 101 (289)
++-++|.||+|+||||+|+.|++.+++.
T Consensus 37 ~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~ 64 (824)
T PRK07764 37 NHAYLFSGPRGCGKTSSARILARSLNCV 64 (824)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhCcc
Confidence 4567999999999999999999999763
No 200
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=97.48 E-value=0.0006 Score=64.23 Aligned_cols=34 Identities=24% Similarity=0.300 Sum_probs=28.6
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhCCCeeehH
Q 022951 73 KHVQWVFLGCPGVGKGTYASRLSNLLGVPHIATG 106 (289)
Q Consensus 73 ~~~~Ivl~GppGsGKSTlak~La~~lg~~~i~~d 106 (289)
+-.-.+|.||||+||||+|+.||+..+..+....
T Consensus 47 ~l~SmIl~GPPG~GKTTlA~liA~~~~~~f~~~s 80 (436)
T COG2256 47 HLHSMILWGPPGTGKTTLARLIAGTTNAAFEALS 80 (436)
T ss_pred CCceeEEECCCCCCHHHHHHHHHHhhCCceEEec
Confidence 3455789999999999999999999988777653
No 201
>KOG0635 consensus Adenosine 5'-phosphosulfate kinase [Inorganic ion transport and metabolism]
Probab=97.47 E-value=0.0026 Score=52.42 Aligned_cols=28 Identities=36% Similarity=0.373 Sum_probs=24.8
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHHHHh
Q 022951 71 EGKHVQWVFLGCPGVGKGTYASRLSNLL 98 (289)
Q Consensus 71 ~~~~~~Ivl~GppGsGKSTlak~La~~l 98 (289)
..+...|.++|.+||||||+|-.|.+.+
T Consensus 28 ~qkGcviWiTGLSgSGKStlACaL~q~L 55 (207)
T KOG0635|consen 28 KQKGCVIWITGLSGSGKSTLACALSQAL 55 (207)
T ss_pred cCCCcEEEEeccCCCCchhHHHHHHHHH
Confidence 4567899999999999999999998876
No 202
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.47 E-value=0.00042 Score=63.63 Aligned_cols=27 Identities=26% Similarity=0.455 Sum_probs=24.1
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHHHhCC
Q 022951 74 HVQWVFLGCPGVGKGTYASRLSNLLGV 100 (289)
Q Consensus 74 ~~~Ivl~GppGsGKSTlak~La~~lg~ 100 (289)
...|++.||||.|||++||.||+++.+
T Consensus 177 NRliLlhGPPGTGKTSLCKaLaQkLSI 203 (423)
T KOG0744|consen 177 NRLILLHGPPGTGKTSLCKALAQKLSI 203 (423)
T ss_pred eeEEEEeCCCCCChhHHHHHHHHhhee
Confidence 367899999999999999999999843
No 203
>TIGR03708 poly_P_AMP_trns polyphosphate:AMP phosphotransferase. Members of this protein family contain a domain duplication. The characterized member from Acinetobacter johnsonii is polyphosphate:AMP phosphotransferase (PAP), which can transfer the terminal phosphate from poly(P) to AMP, yielding ADP. In the opposite direction, this enzyme can synthesize poly(P). Each domain of this protein family is homologous to polyphosphate kinase, an enzyme that can run in the forward direction to extend a polyphosphate chain with a new terminal phosphate from ATP, or in reverse to make ATP (or GTP) from ADP (or GDP).
Probab=97.46 E-value=0.0044 Score=60.60 Aligned_cols=150 Identities=15% Similarity=0.104 Sum_probs=84.0
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHHHhCCCeeehHHHHHHHHHcCCccCHHHHHHHHHHHHHcccccCCceEEEcC--cc
Q 022951 72 GKHVQWVFLGCPGVGKGTYASRLSNLLGVPHIATGDLLDEIVSQGKLVSDEIIINLLSKRLEAGEAKGEAGFILDG--FP 149 (289)
Q Consensus 72 ~~~~~Ivl~GppGsGKSTlak~La~~lg~~~i~~d~l~~~~l~~g~~v~~~~~~~ll~~~l~~~~~~~~~g~Ildg--~p 149 (289)
+.+.+|+|.|..||||+++.+.|.+.++-..+.+-.+ +.+.+.+.....+-......... |...|+|+ |-
T Consensus 38 ~~~vlIv~eG~DaaGKg~~I~~l~~~ldprg~~v~~~-------~~P~~eE~~~~flwRfw~~lP~~-G~I~IFdRSWY~ 109 (493)
T TIGR03708 38 GFPVIILIEGWDGAGKGETINLLNEWMDPRGIETHAF-------GRPSDEERERPPMWRFWRRLPPK-GKIGIFFGSWYT 109 (493)
T ss_pred CCeEEEEEeCCCCCChHHHHHHHHHHhCcCccEEEeC-------CCCCHHHhcCcHHHHHHHhCCCC-CeEEEEcCcccc
Confidence 4678999999999999999999999986444433111 22222222222222222222222 34455554 22
Q ss_pred cH---------------------HHHhhc----CCCcEEEEEecCHHHHHHHHhcccccccCCCccccccccccCCCCCC
Q 022951 150 RT---------------------EILEGV----TDIDLVINLKLREEALLAKCLGRRICSECGGNYNVACIDIKGENGNP 204 (289)
Q Consensus 150 ~~---------------------~~l~~~----~~~d~vI~Ld~~~e~l~~Rl~~R~~~~~~g~~y~~~~~~~~~~~~~~ 204 (289)
+. ..+++. +-.-+-+||.++.++..+|+..|..++.. .+.+
T Consensus 110 ~vlverv~g~~~~~~~~~~~~~I~~FE~~L~~~G~~IlKffLhIsk~EQ~kRl~~r~~~P~k--~WK~------------ 175 (493)
T TIGR03708 110 RPLIERLEGRIDEAKLDSHIEDINRFERMLADDGALILKFWLHLSKKQQKERLKKLEKDPET--RWRV------------ 175 (493)
T ss_pred hhhHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEECCHHHHHHHHHHHhcCCcc--ccCC------------
Confidence 21 111111 11346799999999999999999765422 1111
Q ss_pred CCCCCCCCCCCccccCccccCCCcHHHHHHHHHHHHHhchHHHHHHHH-cCcEEEEeCCCC
Q 022951 205 GMYMGPLLPPPHCASKLITRSDDKEEVVRERLRIYNEKSRPVEEFYRR-RGKLLEFDLPGG 264 (289)
Q Consensus 205 ~~~~~~~~~~~~~~~~L~~r~~d~~~~~~~rl~~y~~~~~~l~~~y~~-~~~l~~id~~~~ 264 (289)
+...-.-+++.+.|...++.++..-+. ...|+.|+++..
T Consensus 176 ---------------------s~~D~~~r~~wd~Y~~a~e~ml~~T~t~~APW~vI~addK 215 (493)
T TIGR03708 176 ---------------------TPEDWKQLKVYDRYRKLAERMLRYTSTPYAPWTVVEGEDD 215 (493)
T ss_pred ---------------------CHHHHHHHHhHHHHHHHHHHHHHhcCCCCCCeEEEcCCCH
Confidence 111222344566677766665554321 346999998854
No 204
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=97.45 E-value=0.00011 Score=70.12 Aligned_cols=34 Identities=32% Similarity=0.490 Sum_probs=30.0
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHHHhCCCeeehHH
Q 022951 74 HVQWVFLGCPGVGKGTYASRLSNLLGVPHIATGD 107 (289)
Q Consensus 74 ~~~Ivl~GppGsGKSTlak~La~~lg~~~i~~d~ 107 (289)
+..|+|+|||||||||+|+.|++.++.+++..|.
T Consensus 50 ~~~ILliGp~G~GKT~LAr~LAk~l~~~fi~vD~ 83 (443)
T PRK05201 50 PKNILMIGPTGVGKTEIARRLAKLANAPFIKVEA 83 (443)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhCChheeecc
Confidence 4678999999999999999999999988877643
No 205
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.44 E-value=0.0012 Score=64.39 Aligned_cols=27 Identities=33% Similarity=0.469 Sum_probs=24.1
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHHHhCC
Q 022951 74 HVQWVFLGCPGVGKGTYASRLSNLLGV 100 (289)
Q Consensus 74 ~~~Ivl~GppGsGKSTlak~La~~lg~ 100 (289)
++.++|+||||+||||+|+.+|+.+++
T Consensus 36 ~~~~Lf~GPpGtGKTTlA~~lA~~l~~ 62 (472)
T PRK14962 36 SHAYIFAGPRGTGKTTVARILAKSLNC 62 (472)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 345899999999999999999999875
No 206
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.41 E-value=0.0008 Score=63.50 Aligned_cols=27 Identities=41% Similarity=0.662 Sum_probs=24.2
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHHHhCC
Q 022951 74 HVQWVFLGCPGVGKGTYASRLSNLLGV 100 (289)
Q Consensus 74 ~~~Ivl~GppGsGKSTlak~La~~lg~ 100 (289)
++.++|.||+|+||||+|+.+++.+++
T Consensus 38 ~h~~L~~Gp~G~GKTtla~~la~~l~c 64 (363)
T PRK14961 38 HHAWLLSGTRGVGKTTIARLLAKSLNC 64 (363)
T ss_pred CeEEEEecCCCCCHHHHHHHHHHHhcC
Confidence 456899999999999999999999864
No 207
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=97.40 E-value=0.00014 Score=68.11 Aligned_cols=28 Identities=25% Similarity=0.242 Sum_probs=25.2
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhCC
Q 022951 73 KHVQWVFLGCPGVGKGTYASRLSNLLGV 100 (289)
Q Consensus 73 ~~~~Ivl~GppGsGKSTlak~La~~lg~ 100 (289)
++.+++|.|||||||||+|+.|++.++.
T Consensus 77 ~r~il~L~GPPGsGKStla~~La~~l~~ 104 (361)
T smart00763 77 RKQILYLLGPVGGGKSSLVECLKRGLEE 104 (361)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 4678899999999999999999999854
No 208
>TIGR01526 nadR_NMN_Atrans nicotinamide-nucleotide adenylyltransferase, NadR type. E. coli NadR has also been found to regulate the import of its substrate, nicotinamide ribonucleotide, but it is not known if the other members of this model share that activity.
Probab=97.40 E-value=0.00081 Score=62.55 Aligned_cols=31 Identities=19% Similarity=0.262 Sum_probs=28.1
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHHHhCCCeee
Q 022951 74 HVQWVFLGCPGVGKGTYASRLSNLLGVPHIA 104 (289)
Q Consensus 74 ~~~Ivl~GppGsGKSTlak~La~~lg~~~i~ 104 (289)
...|+|+|++||||||+++.|+..++..++.
T Consensus 162 ~~~~~~~G~~~~gkstl~~~l~~~~~~~~v~ 192 (325)
T TIGR01526 162 VKTVAILGGESTGKSTLVNKLAAVFNTTSAW 192 (325)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhhCCCEEe
Confidence 4589999999999999999999999988764
No 209
>TIGR03709 PPK2_rel_1 polyphosphate:nucleotide phosphotransferase, PPK2 family. Members of this protein family belong to the polyphosphate kinase 2 (PPK2) family, which is not related in sequence to PPK1. While PPK1 tends to act in the biosynthesis of polyphosphate, or poly(P), members of the PPK2 family tend to use the terminal phosphate of poly(P) to regenerate ATP or GTP from the corresponding nucleoside diphosphate, or ADP from AMP as is the case with polyphosphate:AMP phosphotransferase (PAP). Members of this protein family most likely transfer the terminal phosphate between poly(P) and some nucleotide, but it is not clear which.
Probab=97.40 E-value=0.0061 Score=54.94 Aligned_cols=164 Identities=13% Similarity=0.026 Sum_probs=92.7
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhCCCeeehHHHHHHHHHcCCccCHHHHHHHHHHHHHcccccCCceEEEcC--ccc
Q 022951 73 KHVQWVFLGCPGVGKGTYASRLSNLLGVPHIATGDLLDEIVSQGKLVSDEIIINLLSKRLEAGEAKGEAGFILDG--FPR 150 (289)
Q Consensus 73 ~~~~Ivl~GppGsGKSTlak~La~~lg~~~i~~d~l~~~~l~~g~~v~~~~~~~ll~~~l~~~~~~~~~g~Ildg--~p~ 150 (289)
.+.+|+|.|..||||..+.++|.+.++-.++.+-.+ +.+...+.....+-..-...... |...|+|+ |-.
T Consensus 55 ~~vlIv~eG~DaAGKG~~I~~l~~~lDPRg~~V~s~-------~~Pt~eE~~~p~lWRfw~~lP~~-G~i~IF~RSWY~~ 126 (264)
T TIGR03709 55 RSLLLVLQAMDAAGKDGTIRHVMSGVNPQGCQVTSF-------KAPSAEELDHDFLWRIHKALPER-GEIGIFNRSHYED 126 (264)
T ss_pred CcEEEEEECCCCCCchHHHHHHHHhcCCCeeEEEeC-------CCCCHHHHcCchHHHHHHhCCCC-CeEEEEcCccccc
Confidence 489999999999999999999999987555544111 22222222111122222222222 34455554 222
Q ss_pred H---------------------HHHhhc----CCCcEEEEEecCHHHHHHHHhcccccccCCCccccccccccCCCCCCC
Q 022951 151 T---------------------EILEGV----TDIDLVINLKLREEALLAKCLGRRICSECGGNYNVACIDIKGENGNPG 205 (289)
Q Consensus 151 ~---------------------~~l~~~----~~~d~vI~Ld~~~e~l~~Rl~~R~~~~~~g~~y~~~~~~~~~~~~~~~ 205 (289)
. ..+++. +-.-+-+||.++.++..+|+..|..++.+ .+.+
T Consensus 127 vl~~rv~g~~~~~~~~~~~~~I~~FEr~L~~~G~~IiKffLhIsk~eQ~kRl~~r~~~p~k--~Wk~------------- 191 (264)
T TIGR03709 127 VLVVRVHGLIPKAIWERRYEDINDFERYLTENGTTILKFFLHISKEEQKKRFLARLDDPTK--NWKF------------- 191 (264)
T ss_pred hhhhhhcCCCCHHHHHHHHHHHHHHHHHHHHCCcEEEEEEEeCCHHHHHHHHHHHhcCCcc--cccC-------------
Confidence 1 111111 11346799999999999999988655421 1111
Q ss_pred CCCCCCCCCCccccCccccCCCcHHHHHHHHHHHHHhchHHHHHHHH-cCcEEEEeCCCCc---ccHHHHHHHHhccC
Q 022951 206 MYMGPLLPPPHCASKLITRSDDKEEVVRERLRIYNEKSRPVEEFYRR-RGKLLEFDLPGGI---PESWPKLLQALNLE 279 (289)
Q Consensus 206 ~~~~~~~~~~~~~~~L~~r~~d~~~~~~~rl~~y~~~~~~l~~~y~~-~~~l~~id~~~~~---~ev~~~i~~~l~~~ 279 (289)
+...-...++.+.|...++.++..-+. ...|+.|+++..- -.+.+-|.+.|+..
T Consensus 192 --------------------s~~D~~~~~~yd~y~~a~e~~l~~T~t~~APW~iI~a~dk~~a~l~v~~~ll~~l~~~ 249 (264)
T TIGR03709 192 --------------------SPADLKERAYWDDYMEAYEDALTATSTKHAPWYVVPADDKWFRRLAVAEILLDALESL 249 (264)
T ss_pred --------------------CHHHHHHHHhHHHHHHHHHHHHHhcCCCCCCeEEEcCCCHHHHHHHHHHHHHHHHHHc
Confidence 111233445677777776666554322 3579999988543 23455555555543
No 210
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.37 E-value=0.0014 Score=64.67 Aligned_cols=28 Identities=36% Similarity=0.571 Sum_probs=25.0
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHHHhCCC
Q 022951 74 HVQWVFLGCPGVGKGTYASRLSNLLGVP 101 (289)
Q Consensus 74 ~~~Ivl~GppGsGKSTlak~La~~lg~~ 101 (289)
++.++|+||+|+||||+|+.||+.+++.
T Consensus 38 ~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~ 65 (509)
T PRK14958 38 HHAYLFTGTRGVGKTTISRILAKCLNCE 65 (509)
T ss_pred CeeEEEECCCCCCHHHHHHHHHHHhcCC
Confidence 4568999999999999999999999764
No 211
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.36 E-value=0.001 Score=64.72 Aligned_cols=28 Identities=36% Similarity=0.514 Sum_probs=25.0
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHHHhCCC
Q 022951 74 HVQWVFLGCPGVGKGTYASRLSNLLGVP 101 (289)
Q Consensus 74 ~~~Ivl~GppGsGKSTlak~La~~lg~~ 101 (289)
++.++|+||+|+||||+|+.||+.+++.
T Consensus 40 ~ha~Lf~GP~GtGKTTlAriLAk~Lnce 67 (484)
T PRK14956 40 GHAYIFFGPRGVGKTTIARILAKRLNCE 67 (484)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhcCcc
Confidence 3568999999999999999999999864
No 212
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.34 E-value=0.0011 Score=65.47 Aligned_cols=38 Identities=29% Similarity=0.436 Sum_probs=30.8
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHHHhCCCeeeh--HHHHHH
Q 022951 74 HVQWVFLGCPGVGKGTYASRLSNLLGVPHIAT--GDLLDE 111 (289)
Q Consensus 74 ~~~Ivl~GppGsGKSTlak~La~~lg~~~i~~--d~l~~~ 111 (289)
|-=|+++||||||||-+||+.|.+-|+.+|++ -+|+..
T Consensus 545 PsGvLL~GPPGCGKTLlAKAVANEag~NFisVKGPELlNk 584 (802)
T KOG0733|consen 545 PSGVLLCGPPGCGKTLLAKAVANEAGANFISVKGPELLNK 584 (802)
T ss_pred CCceEEeCCCCccHHHHHHHHhhhccCceEeecCHHHHHH
Confidence 34489999999999999999999988777764 456633
No 213
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.34 E-value=0.002 Score=64.82 Aligned_cols=28 Identities=36% Similarity=0.563 Sum_probs=25.1
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHHHhCCC
Q 022951 74 HVQWVFLGCPGVGKGTYASRLSNLLGVP 101 (289)
Q Consensus 74 ~~~Ivl~GppGsGKSTlak~La~~lg~~ 101 (289)
++.++|+||+|+||||+|+.|++.+++.
T Consensus 38 ~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~ 65 (618)
T PRK14951 38 HHAYLFTGTRGVGKTTVSRILAKSLNCQ 65 (618)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhcCC
Confidence 4678999999999999999999999763
No 214
>PF13173 AAA_14: AAA domain
Probab=97.33 E-value=0.00022 Score=57.00 Aligned_cols=92 Identities=20% Similarity=0.240 Sum_probs=55.2
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHHHhC----CCeeehHHHHHHHHHcCCccCHHHHHHHHHHHHHcccccCCceEEEcCcc
Q 022951 74 HVQWVFLGCPGVGKGTYASRLSNLLG----VPHIATGDLLDEIVSQGKLVSDEIIINLLSKRLEAGEAKGEAGFILDGFP 149 (289)
Q Consensus 74 ~~~Ivl~GppGsGKSTlak~La~~lg----~~~i~~d~l~~~~l~~g~~v~~~~~~~ll~~~l~~~~~~~~~g~Ildg~p 149 (289)
..+++|.||.||||||+++.+++.+. +.+++.++.......... +.+.+.+.... +...+++|-+.
T Consensus 2 ~~~~~l~G~R~vGKTtll~~~~~~~~~~~~~~yi~~~~~~~~~~~~~~------~~~~~~~~~~~----~~~~i~iDEiq 71 (128)
T PF13173_consen 2 RKIIILTGPRGVGKTTLLKQLAKDLLPPENILYINFDDPRDRRLADPD------LLEYFLELIKP----GKKYIFIDEIQ 71 (128)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhcccccceeeccCCHHHHHHhhhh------hHHHHHHhhcc----CCcEEEEehhh
Confidence 46789999999999999999998875 778887666522111100 11222222111 13478888754
Q ss_pred cH----HHHhhcC--CCcEEEEEecCHHHHHH
Q 022951 150 RT----EILEGVT--DIDLVINLKLREEALLA 175 (289)
Q Consensus 150 ~~----~~l~~~~--~~d~vI~Ld~~~e~l~~ 175 (289)
.. ..++.+. .++..|++..+....+.
T Consensus 72 ~~~~~~~~lk~l~d~~~~~~ii~tgS~~~~l~ 103 (128)
T PF13173_consen 72 YLPDWEDALKFLVDNGPNIKIILTGSSSSLLS 103 (128)
T ss_pred hhccHHHHHHHHHHhccCceEEEEccchHHHh
Confidence 44 2233222 24677888877766653
No 215
>PHA02575 1 deoxynucleoside monophosphate kinase; Provisional
Probab=97.31 E-value=0.00026 Score=62.11 Aligned_cols=38 Identities=21% Similarity=0.123 Sum_probs=31.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhCCCe-eehHHHHHHHH
Q 022951 75 VQWVFLGCPGVGKGTYASRLSNLLGVPH-IATGDLLDEIV 113 (289)
Q Consensus 75 ~~Ivl~GppGsGKSTlak~La~~lg~~~-i~~d~l~~~~l 113 (289)
|+|+|+|.|||||||+++.+.+. |.++ +++++-++..+
T Consensus 1 miI~i~G~~gsGKstva~~~~~~-g~~~~~~~~d~ik~~l 39 (227)
T PHA02575 1 MLIAISGKKRSGKDTVADFIIEN-YNAVKYQLADPIKEIL 39 (227)
T ss_pred CEEEEeCCCCCCHHHHHHHHHhc-CCcEEEehhHHHHHHH
Confidence 58999999999999999988655 6666 99988885544
No 216
>PRK14729 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Provisional
Probab=97.31 E-value=0.00065 Score=62.37 Aligned_cols=34 Identities=15% Similarity=0.116 Sum_probs=30.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhCCCeeehHHHH
Q 022951 75 VQWVFLGCPGVGKGTYASRLSNLLGVPHIATGDLL 109 (289)
Q Consensus 75 ~~Ivl~GppGsGKSTlak~La~~lg~~~i~~d~l~ 109 (289)
.+|+|+||.|||||.+|-.||++ +...|+.|.+.
T Consensus 5 ~ii~I~GpTasGKS~LAl~LA~~-~~eIIsaDS~Q 38 (300)
T PRK14729 5 KIVFIFGPTAVGKSNILFHFPKG-KAEIINVDSIQ 38 (300)
T ss_pred cEEEEECCCccCHHHHHHHHHHh-CCcEEeccHHH
Confidence 47999999999999999999999 56899987776
No 217
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=97.31 E-value=0.00027 Score=63.58 Aligned_cols=26 Identities=38% Similarity=0.636 Sum_probs=22.8
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHHh
Q 022951 73 KHVQWVFLGCPGVGKGTYASRLSNLL 98 (289)
Q Consensus 73 ~~~~Ivl~GppGsGKSTlak~La~~l 98 (289)
....++|.||||+||||+|+.+++.+
T Consensus 41 ~~~~vll~GppGtGKTtlA~~ia~~l 66 (261)
T TIGR02881 41 QVLHMIFKGNPGTGKTTVARILGKLF 66 (261)
T ss_pred CcceEEEEcCCCCCHHHHHHHHHHHH
Confidence 34568999999999999999999875
No 218
>PRK09087 hypothetical protein; Validated
Probab=97.30 E-value=0.0016 Score=57.52 Aligned_cols=102 Identities=16% Similarity=0.209 Sum_probs=59.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhCCCeeehHHHHHHHHHc---C-------Cc--cCHHHHHHHHHHHHHcccccCCce
Q 022951 75 VQWVFLGCPGVGKGTYASRLSNLLGVPHIATGDLLDEIVSQ---G-------KL--VSDEIIINLLSKRLEAGEAKGEAG 142 (289)
Q Consensus 75 ~~Ivl~GppGsGKSTlak~La~~lg~~~i~~d~l~~~~l~~---g-------~~--v~~~~~~~ll~~~l~~~~~~~~~g 142 (289)
..++|.|++|||||++++.+++..+..+++.+++..+.+.. + .. ...+.+..++...... +..
T Consensus 45 ~~l~l~G~~GsGKThLl~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~iDDi~~~~~~~~~lf~l~n~~~~~-----g~~ 119 (226)
T PRK09087 45 PVVVLAGPVGSGKTHLASIWREKSDALLIHPNEIGSDAANAAAEGPVLIEDIDAGGFDETGLFHLINSVRQA-----GTS 119 (226)
T ss_pred CeEEEECCCCCCHHHHHHHHHHhcCCEEecHHHcchHHHHhhhcCeEEEECCCCCCCCHHHHHHHHHHHHhC-----CCe
Confidence 45799999999999999999999999999886544332221 1 01 1223334444333332 234
Q ss_pred EEEcC-cccH--H-HHhhcC---CCcEEEEEecCHHHHHHHHhccc
Q 022951 143 FILDG-FPRT--E-ILEGVT---DIDLVINLKLREEALLAKCLGRR 181 (289)
Q Consensus 143 ~Ildg-~p~~--~-~l~~~~---~~d~vI~Ld~~~e~l~~Rl~~R~ 181 (289)
+|+.+ .+.. . .+..+. ....++-|..+.+..+..+..+.
T Consensus 120 ilits~~~p~~~~~~~~dL~SRl~~gl~~~l~~pd~e~~~~iL~~~ 165 (226)
T PRK09087 120 LLMTSRLWPSSWNVKLPDLKSRLKAATVVEIGEPDDALLSQVIFKL 165 (226)
T ss_pred EEEECCCChHHhccccccHHHHHhCCceeecCCCCHHHHHHHHHHH
Confidence 66644 2221 1 112221 23578888887776666665554
No 219
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=97.28 E-value=0.00031 Score=55.53 Aligned_cols=31 Identities=35% Similarity=0.594 Sum_probs=25.3
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHHHh---CCCeee
Q 022951 74 HVQWVFLGCPGVGKGTYASRLSNLL---GVPHIA 104 (289)
Q Consensus 74 ~~~Ivl~GppGsGKSTlak~La~~l---g~~~i~ 104 (289)
...++|.|+||+||||+++.+++.+ +..++.
T Consensus 19 ~~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~ 52 (151)
T cd00009 19 PKNLLLYGPPGTGKTTLARAIANELFRPGAPFLY 52 (151)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhhcCCCCeEE
Confidence 3468899999999999999999987 544443
No 220
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.28 E-value=0.0055 Score=61.33 Aligned_cols=28 Identities=29% Similarity=0.419 Sum_probs=25.0
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHHHhCCC
Q 022951 74 HVQWVFLGCPGVGKGTYASRLSNLLGVP 101 (289)
Q Consensus 74 ~~~Ivl~GppGsGKSTlak~La~~lg~~ 101 (289)
++.++|+||+|+||||+|+.||+.+++.
T Consensus 35 ~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~ 62 (584)
T PRK14952 35 NHAYLFSGPRGCGKTSSARILARSLNCA 62 (584)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhccc
Confidence 4568999999999999999999998764
No 221
>COG4185 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.28 E-value=0.0026 Score=52.85 Aligned_cols=37 Identities=19% Similarity=0.232 Sum_probs=27.4
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHHHh--CCCeeehHHHHH
Q 022951 74 HVQWVFLGCPGVGKGTYASRLSNLL--GVPHIATGDLLD 110 (289)
Q Consensus 74 ~~~Ivl~GppGsGKSTlak~La~~l--g~~~i~~d~l~~ 110 (289)
+...++.||.||||||+-..+-..+ ++.+++.|++..
T Consensus 2 ~~l~IvaG~NGsGKstv~~~~~~~~~~~~~~VN~D~iA~ 40 (187)
T COG4185 2 KRLDIVAGPNGSGKSTVYASTLAPLLPGIVFVNADEIAA 40 (187)
T ss_pred ceEEEEecCCCCCceeeeeccchhhcCCeEEECHHHHhh
Confidence 3567889999999999875543333 567888888873
No 222
>KOG3062 consensus RNA polymerase II elongator associated protein [General function prediction only]
Probab=97.28 E-value=0.0024 Score=55.83 Aligned_cols=103 Identities=20% Similarity=0.231 Sum_probs=58.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHh---C---CCeeehHHHHHHHHHc----CCccCHHHHHHHHHHHHHcccccCCceEE
Q 022951 75 VQWVFLGCPGVGKGTYASRLSNLL---G---VPHIATGDLLDEIVSQ----GKLVSDEIIINLLSKRLEAGEAKGEAGFI 144 (289)
Q Consensus 75 ~~Ivl~GppGsGKSTlak~La~~l---g---~~~i~~d~l~~~~l~~----g~~v~~~~~~~ll~~~l~~~~~~~~~g~I 144 (289)
..|+|+|-|.|||||.|+.|.+.+ + ...|..|+-+ . ++. |..-.+..+...+...+...-.+ +..||
T Consensus 2 pLVvi~G~P~SGKstrA~~L~~~l~~~~~K~~v~ii~desl-g-~~~ns~y~~s~~EK~lRg~L~S~v~R~Lsk-~~iVI 78 (281)
T KOG3062|consen 2 PLVVICGLPCSGKSTRAVELREALKERGTKQSVRIIDDESL-G-IEKNSNYGDSQAEKALRGKLRSAVDRSLSK-GDIVI 78 (281)
T ss_pred CeEEEeCCCCCCchhHHHHHHHHHHhhcccceEEEechhhc-C-CCCcccccccHHHHHHHHHHHHHHHhhccc-CcEEE
Confidence 578999999999999999999887 2 2233333322 0 011 11111223334444444443333 66889
Q ss_pred EcCcc--cH---HH--H-hhcCCCcEEEEEecCHHHHHHHHhcc
Q 022951 145 LDGFP--RT---EI--L-EGVTDIDLVINLKLREEALLAKCLGR 180 (289)
Q Consensus 145 ldg~p--~~---~~--l-~~~~~~d~vI~Ld~~~e~l~~Rl~~R 180 (289)
+|... +. +. . +...--..|||..+|.+.+.+.-..|
T Consensus 79 ~DslNyIKGfRYeLyC~ak~~~tt~Cvv~t~vp~e~~r~~Ns~~ 122 (281)
T KOG3062|consen 79 VDSLNYIKGFRYELYCEAKAARTTYCVVHTAVPQELCREWNSER 122 (281)
T ss_pred EecccccccceeeeeeehhccceeEEEEEecCCHHHHHHhcccC
Confidence 98522 21 11 1 11112456899999999987766544
No 223
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=97.28 E-value=0.0013 Score=64.62 Aligned_cols=29 Identities=24% Similarity=0.352 Sum_probs=25.8
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHHHhCCCe
Q 022951 74 HVQWVFLGCPGVGKGTYASRLSNLLGVPH 102 (289)
Q Consensus 74 ~~~Ivl~GppGsGKSTlak~La~~lg~~~ 102 (289)
+..++|+||+|+||||+|+.||+.+++.+
T Consensus 43 ~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~ 71 (507)
T PRK06645 43 AGGYLLTGIRGVGKTTSARIIAKAVNCSA 71 (507)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhcCcc
Confidence 46789999999999999999999997654
No 224
>PF03976 PPK2: Polyphosphate kinase 2 (PPK2); InterPro: IPR022488 This presumed domain is found in one or two copies per protein. The domain is about 230 amino acids in length and has many conserved motifs, it has polyphosphate kinase activity [, ].; PDB: 3CZP_A 3RHF_D 3CZQ_B.
Probab=97.27 E-value=0.00095 Score=58.96 Aligned_cols=163 Identities=17% Similarity=0.113 Sum_probs=81.1
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhCCCeeehHHHHHHHHHcCCccCHHHHHHHHHHHHHcccccCCceEEEcC--ccc
Q 022951 73 KHVQWVFLGCPGVGKGTYASRLSNLLGVPHIATGDLLDEIVSQGKLVSDEIIINLLSKRLEAGEAKGEAGFILDG--FPR 150 (289)
Q Consensus 73 ~~~~Ivl~GppGsGKSTlak~La~~lg~~~i~~d~l~~~~l~~g~~v~~~~~~~ll~~~l~~~~~~~~~g~Ildg--~p~ 150 (289)
.+++|+|.|..||||+.+.+.|.+.++=.++.+-.+ +.+...+.....+-......... |...|+|+ |..
T Consensus 30 ~~vlIl~eG~d~sGKg~~I~~l~~~lDPR~~~v~~~-------~~pt~eE~~~p~lwRfw~~lP~~-G~I~if~rSWY~~ 101 (228)
T PF03976_consen 30 IPVLILFEGWDASGKGGTINRLIEWLDPRGFRVHAF-------GKPTDEELRRPFLWRFWRALPAR-GQIGIFDRSWYED 101 (228)
T ss_dssp HEEEEEEEESTTSSHHHHHHHHHCCS-GGGEEEEE--------SS--HHHHTS-TTHHHHTTS--T-T-EEEEES-GGGG
T ss_pred CcEEEEEeccccCCchHHHHHHHHhCCCCeeEEEeC-------CCCChhHcCCCcHHHHHHhCCCC-CEEEEEecchhhH
Confidence 468899999999999999999998885444433111 11111111111122222222222 45566665 222
Q ss_pred H---------------------HHHhhc----CCCcEEEEEecCHHHHHHHHhcccccccCCCccccccccccCCCCCCC
Q 022951 151 T---------------------EILEGV----TDIDLVINLKLREEALLAKCLGRRICSECGGNYNVACIDIKGENGNPG 205 (289)
Q Consensus 151 ~---------------------~~l~~~----~~~d~vI~Ld~~~e~l~~Rl~~R~~~~~~g~~y~~~~~~~~~~~~~~~ 205 (289)
. ..+++. +-.-+-+||.++.+...+|+..|..++.+ .+.+.
T Consensus 102 ~l~~rv~~~~~~~~~~~~~~~I~~FEr~L~~~G~~IiKfflhIsk~eQ~kRl~~~~~~p~~--~wkv~------------ 167 (228)
T PF03976_consen 102 VLVERVEGFIDEAEWERRLEEINRFERMLADDGTLIIKFFLHISKKEQKKRLKEREEDPLK--RWKVS------------ 167 (228)
T ss_dssp GTHHHHTTSSTHHHHHHHHHHHHHHHHHHHHTTEEEEEEEEE--HHHHHHHHHHHHHSCCC--GGG--------------
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHCCCeEEEEEEEeCHHHHHHHHHHHhcCccc--cccCC------------
Confidence 1 011111 11346799999999999999998755421 12111
Q ss_pred CCCCCCCCCCccccCccccCCCcHHHHHHHHHHHHHhchHHHHHHHH-cCcEEEEeCCCCc---ccHHHHHHHHhcc
Q 022951 206 MYMGPLLPPPHCASKLITRSDDKEEVVRERLRIYNEKSRPVEEFYRR-RGKLLEFDLPGGI---PESWPKLLQALNL 278 (289)
Q Consensus 206 ~~~~~~~~~~~~~~~L~~r~~d~~~~~~~rl~~y~~~~~~l~~~y~~-~~~l~~id~~~~~---~ev~~~i~~~l~~ 278 (289)
...-.-.++.+.|...++.++..-+. ...|+.|+++..- -.+...|.+.|+.
T Consensus 168 ---------------------~~D~~~~~~yd~y~~a~~~~l~~T~t~~APW~iI~a~dk~~a~l~v~~~l~~~le~ 223 (228)
T PF03976_consen 168 ---------------------PEDWEQRKHYDRYQKAYEEMLERTDTPYAPWHIIPADDKRYARLAVARTLLDALEK 223 (228)
T ss_dssp ---------------------HHHHHHHCCHHHHHHHHHHHHHHH-BSSS-EEEEE-SSHHHHHHHHHHHHHHHHHH
T ss_pred ---------------------HHHHHHHhhHHHHHHHHHHHHhccCCCCCCeEEEeCCCHHHHHHHHHHHHHHHhHh
Confidence 11112234566666666655554322 4579999988443 2234444444443
No 225
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.27 E-value=0.0012 Score=64.66 Aligned_cols=28 Identities=32% Similarity=0.414 Sum_probs=24.5
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHHHhCCC
Q 022951 74 HVQWVFLGCPGVGKGTYASRLSNLLGVP 101 (289)
Q Consensus 74 ~~~Ivl~GppGsGKSTlak~La~~lg~~ 101 (289)
++-++|+||+|+||||+|+.||+.+++.
T Consensus 35 ~ha~Lf~Gp~G~GKTT~ArilAk~LnC~ 62 (491)
T PRK14964 35 PQSILLVGASGVGKTTCARIISLCLNCS 62 (491)
T ss_pred CceEEEECCCCccHHHHHHHHHHHHcCc
Confidence 4568999999999999999999988653
No 226
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=97.26 E-value=0.00034 Score=56.65 Aligned_cols=28 Identities=29% Similarity=0.313 Sum_probs=25.3
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHHHhCCC
Q 022951 74 HVQWVFLGCPGVGKGTYASRLSNLLGVP 101 (289)
Q Consensus 74 ~~~Ivl~GppGsGKSTlak~La~~lg~~ 101 (289)
..+|+|.|+.||||||+++.+++.+|..
T Consensus 22 ~~~i~l~G~lGaGKTtl~~~l~~~lg~~ 49 (133)
T TIGR00150 22 GTVVLLKGDLGAGKTTLVQGLLQGLGIQ 49 (133)
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHcCCC
Confidence 4579999999999999999999999864
No 227
>PRK04195 replication factor C large subunit; Provisional
Probab=97.25 E-value=0.00089 Score=65.58 Aligned_cols=32 Identities=34% Similarity=0.457 Sum_probs=28.3
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHHHhCCCeeeh
Q 022951 74 HVQWVFLGCPGVGKGTYASRLSNLLGVPHIAT 105 (289)
Q Consensus 74 ~~~Ivl~GppGsGKSTlak~La~~lg~~~i~~ 105 (289)
+..++|.||||+||||+++.|++.+++.++..
T Consensus 39 ~~~lLL~GppG~GKTtla~ala~el~~~~iel 70 (482)
T PRK04195 39 KKALLLYGPPGVGKTSLAHALANDYGWEVIEL 70 (482)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHcCCCEEEE
Confidence 45688999999999999999999999877755
No 228
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.25 E-value=0.0026 Score=63.99 Aligned_cols=28 Identities=39% Similarity=0.586 Sum_probs=25.2
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHHHhCCC
Q 022951 74 HVQWVFLGCPGVGKGTYASRLSNLLGVP 101 (289)
Q Consensus 74 ~~~Ivl~GppGsGKSTlak~La~~lg~~ 101 (289)
++.++|+||+|+||||+|+.||+.+++.
T Consensus 37 ~HAyLF~GPpGvGKTTlAriLAK~LnC~ 64 (702)
T PRK14960 37 HHAYLFTGTRGVGKTTIARILAKCLNCE 64 (702)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 4678999999999999999999999764
No 229
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=97.25 E-value=0.0003 Score=66.05 Aligned_cols=38 Identities=21% Similarity=0.274 Sum_probs=31.8
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHHHhCCCee--ehHHHH
Q 022951 72 GKHVQWVFLGCPGVGKGTYASRLSNLLGVPHI--ATGDLL 109 (289)
Q Consensus 72 ~~~~~Ivl~GppGsGKSTlak~La~~lg~~~i--~~d~l~ 109 (289)
..|..+.|.||||||||.+|+.+|+++|+.+| +..++.
T Consensus 146 k~PlgllL~GPPGcGKTllAraiA~elg~~~i~vsa~eL~ 185 (413)
T PLN00020 146 KVPLILGIWGGKGQGKSFQCELVFKKMGIEPIVMSAGELE 185 (413)
T ss_pred CCCeEEEeeCCCCCCHHHHHHHHHHHcCCCeEEEEHHHhh
Confidence 45678889999999999999999999987654 566666
No 230
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.24 E-value=0.0021 Score=66.62 Aligned_cols=28 Identities=32% Similarity=0.527 Sum_probs=25.1
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHHHhCCC
Q 022951 74 HVQWVFLGCPGVGKGTYASRLSNLLGVP 101 (289)
Q Consensus 74 ~~~Ivl~GppGsGKSTlak~La~~lg~~ 101 (289)
++.++|+||+|+||||+|+.|++.+++.
T Consensus 38 ~HAyLFtGPpGtGKTTLARiLAk~Lnce 65 (944)
T PRK14949 38 HHAYLFTGTRGVGKTSLARLFAKGLNCE 65 (944)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhccCc
Confidence 4567999999999999999999999764
No 231
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=97.23 E-value=0.00029 Score=65.22 Aligned_cols=30 Identities=23% Similarity=0.357 Sum_probs=27.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhCCCeee
Q 022951 75 VQWVFLGCPGVGKGTYASRLSNLLGVPHIA 104 (289)
Q Consensus 75 ~~Ivl~GppGsGKSTlak~La~~lg~~~i~ 104 (289)
..|+|.|+||+||||+++.||+.+|.+++.
T Consensus 65 ~~ilL~G~pGtGKTtla~~lA~~l~~~~~r 94 (327)
T TIGR01650 65 RRVMVQGYHGTGKSTHIEQIAARLNWPCVR 94 (327)
T ss_pred CcEEEEeCCCChHHHHHHHHHHHHCCCeEE
Confidence 458999999999999999999999988774
No 232
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.22 E-value=0.0029 Score=62.70 Aligned_cols=27 Identities=37% Similarity=0.602 Sum_probs=24.0
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHHHhCC
Q 022951 74 HVQWVFLGCPGVGKGTYASRLSNLLGV 100 (289)
Q Consensus 74 ~~~Ivl~GppGsGKSTlak~La~~lg~ 100 (289)
++.++|+||+|+||||+|+.||+.+++
T Consensus 38 ~ha~Lf~Gp~GvGKTTlAr~lAk~L~c 64 (546)
T PRK14957 38 HHAYLFTGTRGVGKTTLGRLLAKCLNC 64 (546)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 456789999999999999999998865
No 233
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.21 E-value=0.0016 Score=59.35 Aligned_cols=39 Identities=21% Similarity=0.376 Sum_probs=31.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhCCCe--eehHHHHHHHH
Q 022951 75 VQWVFLGCPGVGKGTYASRLSNLLGVPH--IATGDLLDEIV 113 (289)
Q Consensus 75 ~~Ivl~GppGsGKSTlak~La~~lg~~~--i~~d~l~~~~l 113 (289)
.-|+|.||||.|||.+|+..|-+-+-.+ ++..|++..+|
T Consensus 167 rgiLLyGPPGTGKSYLAKAVATEAnSTFFSvSSSDLvSKWm 207 (439)
T KOG0739|consen 167 RGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWM 207 (439)
T ss_pred eeEEEeCCCCCcHHHHHHHHHhhcCCceEEeehHHHHHHHh
Confidence 4588999999999999999999887554 55677774443
No 234
>PRK08099 bifunctional DNA-binding transcriptional repressor/ NMN adenylyltransferase; Provisional
Probab=97.21 E-value=0.00032 Score=67.01 Aligned_cols=34 Identities=21% Similarity=0.188 Sum_probs=29.4
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHHHHhCCCeee
Q 022951 71 EGKHVQWVFLGCPGVGKGTYASRLSNLLGVPHIA 104 (289)
Q Consensus 71 ~~~~~~Ivl~GppGsGKSTlak~La~~lg~~~i~ 104 (289)
+....+|+|+|++||||||+++.|++.||...+.
T Consensus 216 ~~~~~~IvI~G~~gsGKTTL~~~La~~~g~~~v~ 249 (399)
T PRK08099 216 PFFVRTVAILGGESSGKSTLVNKLANIFNTTSAW 249 (399)
T ss_pred hCCCcEEEEEcCCCCCHHHHHHHHHHHhCCCeee
Confidence 3445789999999999999999999999987654
No 235
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.19 E-value=0.0017 Score=61.98 Aligned_cols=28 Identities=29% Similarity=0.427 Sum_probs=24.8
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHHHhCCC
Q 022951 74 HVQWVFLGCPGVGKGTYASRLSNLLGVP 101 (289)
Q Consensus 74 ~~~Ivl~GppGsGKSTlak~La~~lg~~ 101 (289)
++-++|.||||+||||+|+.+|+.+.+.
T Consensus 38 ~ha~lf~Gp~G~GKtt~A~~~a~~l~c~ 65 (397)
T PRK14955 38 GHGYIFSGLRGVGKTTAARVFAKAVNCQ 65 (397)
T ss_pred ceeEEEECCCCCCHHHHHHHHHHHhcCC
Confidence 4558899999999999999999999764
No 236
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.18 E-value=0.0024 Score=63.24 Aligned_cols=28 Identities=39% Similarity=0.587 Sum_probs=24.9
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHHHhCCC
Q 022951 74 HVQWVFLGCPGVGKGTYASRLSNLLGVP 101 (289)
Q Consensus 74 ~~~Ivl~GppGsGKSTlak~La~~lg~~ 101 (289)
++.++|+||+|+||||+|+.|++.+++.
T Consensus 38 ~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~ 65 (527)
T PRK14969 38 HHAYLFTGTRGVGKTTLARILAKSLNCE 65 (527)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHhcCC
Confidence 4568999999999999999999999763
No 237
>KOG2702 consensus Predicted panthothenate kinase/uridine kinase-related protein [Nucleotide transport and metabolism; Coenzyme transport and metabolism]
Probab=97.18 E-value=0.0011 Score=58.21 Aligned_cols=114 Identities=18% Similarity=0.199 Sum_probs=67.6
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHHHHhCCC-------------eeehHHHH-------------HHHHHcCC--ccCHH
Q 022951 71 EGKHVQWVFLGCPGVGKGTYASRLSNLLGVP-------------HIATGDLL-------------DEIVSQGK--LVSDE 122 (289)
Q Consensus 71 ~~~~~~Ivl~GppGsGKSTlak~La~~lg~~-------------~i~~d~l~-------------~~~l~~g~--~v~~~ 122 (289)
......+.+.|+||+||||++..+++..... .+.+|-+. ......|. .....
T Consensus 116 ~n~~~l~glag~pGtgkst~~a~v~~aWp~~~~~f~~e~i~iaiivPMDGFHlsr~~LD~f~dP~~AharRGapwTFD~~ 195 (323)
T KOG2702|consen 116 SNNEELTGLAGRPGTGKSTRIAAVDNAWPVNVNKFAQESINIAIIVPMDGFHLSRRCLDLFKDPQTAHARRGAPWTFDSN 195 (323)
T ss_pred ccchheeeeecCCCCcchhHHHHHHhhcchhhhhhhhhhcceeEEecccchhhhHHHHHhhcChHHHHhhcCCCcccCHH
Confidence 3456788999999999999999998865321 12333322 11122332 23344
Q ss_pred HHHHHHHHHHHc--cc------------------c--cCCceEEEcC-cccH--HHHhhcCC-CcEEEEEecCHHHHHHH
Q 022951 123 IIINLLSKRLEA--GE------------------A--KGEAGFILDG-FPRT--EILEGVTD-IDLVINLKLREEALLAK 176 (289)
Q Consensus 123 ~~~~ll~~~l~~--~~------------------~--~~~~g~Ildg-~p~~--~~l~~~~~-~d~vI~Ld~~~e~l~~R 176 (289)
.+..+++..-.. .+ + ..++.+|++| |... +.|+.+.. .|..+|+|++-+...+|
T Consensus 196 lfl~l~k~lkk~t~~~iyvPsFdHa~gDPv~DdicVs~~~rIvI~EGnYlLl~~~~Wkdi~k~~d~k~~idV~~~~a~~R 275 (323)
T KOG2702|consen 196 LFLQLCKILKKTTIPDIYVPSFDHALGDPVPDDICVSKFTRIVILEGNYLLLDQENWKDIYKTLDDKYKIDVDYEAAEER 275 (323)
T ss_pred HHHHHHHHHhhcCCCceeccccccccCCCCccceeecccceEEEEeccEEEecCccHHHHHHHhhhheeccccHHHHHHH
Confidence 555544332110 00 0 1155678888 3322 34444322 57789999999999999
Q ss_pred Hhcccccc
Q 022951 177 CLGRRICS 184 (289)
Q Consensus 177 l~~R~~~~ 184 (289)
+.+|+...
T Consensus 276 Va~RHl~s 283 (323)
T KOG2702|consen 276 VAKRHLQS 283 (323)
T ss_pred HHHHhhcc
Confidence 99998653
No 238
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=97.16 E-value=0.00042 Score=66.07 Aligned_cols=32 Identities=22% Similarity=0.290 Sum_probs=27.5
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhCCCeee
Q 022951 73 KHVQWVFLGCPGVGKGTYASRLSNLLGVPHIA 104 (289)
Q Consensus 73 ~~~~Ivl~GppGsGKSTlak~La~~lg~~~i~ 104 (289)
.+.-|+|.||||+|||++|+.+|..++..++.
T Consensus 164 ~p~gvLL~GppGtGKT~lAkaia~~~~~~~i~ 195 (389)
T PRK03992 164 PPKGVLLYGPPGTGKTLLAKAVAHETNATFIR 195 (389)
T ss_pred CCCceEEECCCCCChHHHHHHHHHHhCCCEEE
Confidence 35568999999999999999999999876654
No 239
>CHL00181 cbbX CbbX; Provisional
Probab=97.15 E-value=0.00068 Score=61.98 Aligned_cols=39 Identities=28% Similarity=0.536 Sum_probs=29.0
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHHHhC---------CCeeehHHHHHHH
Q 022951 74 HVQWVFLGCPGVGKGTYASRLSNLLG---------VPHIATGDLLDEI 112 (289)
Q Consensus 74 ~~~Ivl~GppGsGKSTlak~La~~lg---------~~~i~~d~l~~~~ 112 (289)
...++|.||||+||||+|+.+++.+. +..++.++++..+
T Consensus 59 ~~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~~~~l~~~~ 106 (287)
T CHL00181 59 GLHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVTRDDLVGQY 106 (287)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEecHHHHHHHH
Confidence 45689999999999999999998752 2345555665443
No 240
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.14 E-value=0.0027 Score=59.17 Aligned_cols=130 Identities=12% Similarity=0.068 Sum_probs=78.2
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhCCCeeehHHHHHHHHHcCCccCHHHHHHH--HHHHHHcccccCCceEEEcCccc
Q 022951 73 KHVQWVFLGCPGVGKGTYASRLSNLLGVPHIATGDLLDEIVSQGKLVSDEIIINL--LSKRLEAGEAKGEAGFILDGFPR 150 (289)
Q Consensus 73 ~~~~Ivl~GppGsGKSTlak~La~~lg~~~i~~d~l~~~~l~~g~~v~~~~~~~l--l~~~l~~~~~~~~~g~Ildg~p~ 150 (289)
.+.-|++.||||+|||-+|+++|++-|..++++ .+..+++.|+.+- +-.++....
T Consensus 126 p~kGiLL~GPpG~GKTmlAKA~Akeaga~fInv---------~~s~lt~KWfgE~eKlv~AvFslA-------------- 182 (386)
T KOG0737|consen 126 PPKGILLYGPPGTGKTMLAKAIAKEAGANFINV---------SVSNLTSKWFGEAQKLVKAVFSLA-------------- 182 (386)
T ss_pred CCccceecCCCCchHHHHHHHHHHHcCCCccee---------eccccchhhHHHHHHHHHHHHhhh--------------
Confidence 456789999999999999999999999998876 1233344444221 111111111
Q ss_pred HHHHhhcCCCcEEEEEecCHHHHHHHHhcccccccCCCccccccccccCCCCCCCCCCCCCCCCCccccCccccCCCcHH
Q 022951 151 TEILEGVTDIDLVINLKLREEALLAKCLGRRICSECGGNYNVACIDIKGENGNPGMYMGPLLPPPHCASKLITRSDDKEE 230 (289)
Q Consensus 151 ~~~l~~~~~~d~vI~Ld~~~e~l~~Rl~~R~~~~~~g~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~r~~d~~~ 230 (289)
.++ --.+||+|--+..+..| +.. | .|
T Consensus 183 ----sKl--~P~iIFIDEvds~L~~R--~s~---------------------------------------------d-HE 208 (386)
T KOG0737|consen 183 ----SKL--QPSIIFIDEVDSFLGQR--RST---------------------------------------------D-HE 208 (386)
T ss_pred ----hhc--CcceeehhhHHHHHhhc--ccc---------------------------------------------h-HH
Confidence 111 13477887777776665 111 1 23
Q ss_pred HHHHHHHHHHHhchHHHHHHHHcCcEEEEeCCCCcccHHHHHHHHhccCCc
Q 022951 231 VVRERLRIYNEKSRPVEEFYRRRGKLLEFDLPGGIPESWPKLLQALNLEDP 281 (289)
Q Consensus 231 ~~~~rl~~y~~~~~~l~~~y~~~~~l~~id~~~~~~ev~~~i~~~l~~~~~ 281 (289)
.-..--+.|...|+.+.. .....+++.-+.+.+.++++.|...+-..++
T Consensus 209 a~a~mK~eFM~~WDGl~s--~~~~rVlVlgATNRP~DlDeAiiRR~p~rf~ 257 (386)
T KOG0737|consen 209 ATAMMKNEFMALWDGLSS--KDSERVLVLGATNRPFDLDEAIIRRLPRRFH 257 (386)
T ss_pred HHHHHHHHHHHHhccccC--CCCceEEEEeCCCCCccHHHHHHHhCcceee
Confidence 333334556666655432 0122477778888888888888877766554
No 241
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=97.13 E-value=0.00045 Score=62.21 Aligned_cols=29 Identities=24% Similarity=0.256 Sum_probs=25.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCeee
Q 022951 76 QWVFLGCPGVGKGTYASRLSNLLGVPHIA 104 (289)
Q Consensus 76 ~Ivl~GppGsGKSTlak~La~~lg~~~i~ 104 (289)
.++|.|+||+|||++|+.|++.+|.+++.
T Consensus 23 ~vLL~G~~GtGKT~lA~~la~~lg~~~~~ 51 (262)
T TIGR02640 23 PVHLRGPAGTGKTTLAMHVARKRDRPVML 51 (262)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhCCCEEE
Confidence 46789999999999999999999887763
No 242
>PRK13342 recombination factor protein RarA; Reviewed
Probab=97.12 E-value=0.0017 Score=62.33 Aligned_cols=32 Identities=28% Similarity=0.390 Sum_probs=27.1
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHHHhCCCeeeh
Q 022951 74 HVQWVFLGCPGVGKGTYASRLSNLLGVPHIAT 105 (289)
Q Consensus 74 ~~~Ivl~GppGsGKSTlak~La~~lg~~~i~~ 105 (289)
...++|.||||+||||+|+.|++..+..++..
T Consensus 36 ~~~ilL~GppGtGKTtLA~~ia~~~~~~~~~l 67 (413)
T PRK13342 36 LSSMILWGPPGTGKTTLARIIAGATDAPFEAL 67 (413)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhCCCEEEE
Confidence 34678899999999999999999988776654
No 243
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=97.12 E-value=0.00048 Score=58.01 Aligned_cols=23 Identities=35% Similarity=0.511 Sum_probs=20.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHh
Q 022951 76 QWVFLGCPGVGKGTYASRLSNLL 98 (289)
Q Consensus 76 ~Ivl~GppGsGKSTlak~La~~l 98 (289)
.|+|+|+||+||||+.+.+.+.+
T Consensus 1 ~i~iTG~pG~GKTTll~k~i~~l 23 (168)
T PF03266_consen 1 HIFITGPPGVGKTTLLKKVIEEL 23 (168)
T ss_dssp EEEEES-TTSSHHHHHHHHHHHH
T ss_pred CEEEECcCCCCHHHHHHHHHHHh
Confidence 48999999999999999999988
No 244
>PLN02796 D-glycerate 3-kinase
Probab=97.12 E-value=0.0004 Score=64.76 Aligned_cols=38 Identities=18% Similarity=0.159 Sum_probs=30.5
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHHHhC-----CCeeehHHHH
Q 022951 72 GKHVQWVFLGCPGVGKGTYASRLSNLLG-----VPHIATGDLL 109 (289)
Q Consensus 72 ~~~~~Ivl~GppGsGKSTlak~La~~lg-----~~~i~~d~l~ 109 (289)
.++++|.|.|++||||||+++.|...+. ...++.|++.
T Consensus 98 ~~pliIGI~G~sGSGKSTLa~~L~~lL~~~g~~~g~IsiDdfY 140 (347)
T PLN02796 98 IPPLVIGISAPQGCGKTTLVFALVYLFNATGRRAASLSIDDFY 140 (347)
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHHHhcccCCceeEEEECCcc
Confidence 3578899999999999999999998874 3446666655
No 245
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=97.12 E-value=0.0026 Score=62.39 Aligned_cols=37 Identities=24% Similarity=0.280 Sum_probs=29.8
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhCCCeee--hHHHH
Q 022951 73 KHVQWVFLGCPGVGKGTYASRLSNLLGVPHIA--TGDLL 109 (289)
Q Consensus 73 ~~~~Ivl~GppGsGKSTlak~La~~lg~~~i~--~d~l~ 109 (289)
.+..++|.||||+|||.+|+.+|...+..+++ ..+++
T Consensus 275 ~~~giLl~GpPGtGKT~lAkava~~~~~~fi~v~~~~l~ 313 (494)
T COG0464 275 PPKGVLLYGPPGTGKTLLAKAVALESRSRFISVKGSELL 313 (494)
T ss_pred CCCeeEEECCCCCCHHHHHHHHHhhCCCeEEEeeCHHHh
Confidence 44579999999999999999999988776665 33444
No 246
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=97.11 E-value=0.00042 Score=66.46 Aligned_cols=32 Identities=28% Similarity=0.478 Sum_probs=28.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhCCCeeehH
Q 022951 75 VQWVFLGCPGVGKGTYASRLSNLLGVPHIATG 106 (289)
Q Consensus 75 ~~Ivl~GppGsGKSTlak~La~~lg~~~i~~d 106 (289)
..++|.||||||||++|+.||+.++.+++..+
T Consensus 109 ~~iLl~Gp~GtGKT~lAr~lA~~l~~pf~~id 140 (412)
T PRK05342 109 SNILLIGPTGSGKTLLAQTLARILDVPFAIAD 140 (412)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHhCCCceecc
Confidence 46899999999999999999999998887653
No 247
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=97.10 E-value=0.0037 Score=61.47 Aligned_cols=28 Identities=29% Similarity=0.363 Sum_probs=24.4
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHHHhCCC
Q 022951 74 HVQWVFLGCPGVGKGTYASRLSNLLGVP 101 (289)
Q Consensus 74 ~~~Ivl~GppGsGKSTlak~La~~lg~~ 101 (289)
+.-++|.||||+|||++++.+++.++..
T Consensus 216 p~GILLyGPPGTGKT~LAKAlA~eL~~~ 243 (512)
T TIGR03689 216 PKGVLLYGPPGCGKTLIAKAVANSLAQR 243 (512)
T ss_pred CcceEEECCCCCcHHHHHHHHHHhhccc
Confidence 4568999999999999999999988543
No 248
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=97.09 E-value=0.0017 Score=65.67 Aligned_cols=28 Identities=36% Similarity=0.520 Sum_probs=25.1
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHHHhCCC
Q 022951 74 HVQWVFLGCPGVGKGTYASRLSNLLGVP 101 (289)
Q Consensus 74 ~~~Ivl~GppGsGKSTlak~La~~lg~~ 101 (289)
++.++|+||+|+||||+|+.|++.+++.
T Consensus 38 ~Ha~Lf~GP~GvGKTTlAriLAk~LnC~ 65 (709)
T PRK08691 38 HHAYLLTGTRGVGKTTIARILAKSLNCE 65 (709)
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHhccc
Confidence 4668999999999999999999998764
No 249
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=97.08 E-value=0.0016 Score=65.65 Aligned_cols=28 Identities=39% Similarity=0.545 Sum_probs=24.9
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHHHhCCC
Q 022951 74 HVQWVFLGCPGVGKGTYASRLSNLLGVP 101 (289)
Q Consensus 74 ~~~Ivl~GppGsGKSTlak~La~~lg~~ 101 (289)
++.++|+|++|+||||+|+.|++.+++.
T Consensus 38 ~hAyLf~Gp~GvGKTTlAr~lAk~L~c~ 65 (647)
T PRK07994 38 HHAYLFSGTRGVGKTTIARLLAKGLNCE 65 (647)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhhhhc
Confidence 4568999999999999999999999763
No 250
>PF13245 AAA_19: Part of AAA domain
Probab=97.07 E-value=0.00066 Score=49.49 Aligned_cols=25 Identities=44% Similarity=0.691 Sum_probs=17.6
Q ss_pred ceEEEEEcCCCCCHH-HHHHHHHHHh
Q 022951 74 HVQWVFLGCPGVGKG-TYASRLSNLL 98 (289)
Q Consensus 74 ~~~Ivl~GppGsGKS-Tlak~La~~l 98 (289)
...++|.|||||||| |+++.++..+
T Consensus 10 ~~~~vv~g~pGtGKT~~~~~~i~~l~ 35 (76)
T PF13245_consen 10 SPLFVVQGPPGTGKTTTLAARIAELL 35 (76)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 345678999999999 5555555444
No 251
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=97.07 E-value=0.0069 Score=51.44 Aligned_cols=27 Identities=33% Similarity=0.413 Sum_probs=24.1
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHHHhCC
Q 022951 74 HVQWVFLGCPGVGKGTYASRLSNLLGV 100 (289)
Q Consensus 74 ~~~Ivl~GppGsGKSTlak~La~~lg~ 100 (289)
+..++|.||+|+||||+++.+++.+..
T Consensus 14 ~~~~L~~G~~G~gkt~~a~~~~~~l~~ 40 (188)
T TIGR00678 14 AHAYLFAGPEGVGKELLALALAKALLC 40 (188)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHcC
Confidence 567899999999999999999998754
No 252
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=97.06 E-value=0.00064 Score=64.09 Aligned_cols=32 Identities=22% Similarity=0.296 Sum_probs=27.7
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHHHhCCCeeeh
Q 022951 74 HVQWVFLGCPGVGKGTYASRLSNLLGVPHIAT 105 (289)
Q Consensus 74 ~~~Ivl~GppGsGKSTlak~La~~lg~~~i~~ 105 (289)
+.-++|.||||+|||++++.++..++..++..
T Consensus 156 p~gvLL~GppGtGKT~lakaia~~l~~~~~~v 187 (364)
T TIGR01242 156 PKGVLLYGPPGTGKTLLAKAVAHETNATFIRV 187 (364)
T ss_pred CceEEEECCCCCCHHHHHHHHHHhCCCCEEec
Confidence 45689999999999999999999998776653
No 253
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=97.06 E-value=0.00068 Score=66.81 Aligned_cols=31 Identities=26% Similarity=0.280 Sum_probs=26.9
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHHHhCCCeee
Q 022951 74 HVQWVFLGCPGVGKGTYASRLSNLLGVPHIA 104 (289)
Q Consensus 74 ~~~Ivl~GppGsGKSTlak~La~~lg~~~i~ 104 (289)
..+++|+||+||||||..+.||+++|+.+..
T Consensus 45 ~~iLlLtGP~G~GKtttv~~La~elg~~v~E 75 (519)
T PF03215_consen 45 KRILLLTGPSGCGKTTTVKVLAKELGFEVQE 75 (519)
T ss_pred cceEEEECCCCCCHHHHHHHHHHHhCCeeEE
Confidence 3478899999999999999999999876653
No 254
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.04 E-value=0.0021 Score=61.57 Aligned_cols=26 Identities=27% Similarity=0.378 Sum_probs=22.9
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHHh
Q 022951 73 KHVQWVFLGCPGVGKGTYASRLSNLL 98 (289)
Q Consensus 73 ~~~~Ivl~GppGsGKSTlak~La~~l 98 (289)
++.+++|+||+||||||++..||..+
T Consensus 222 ~~~vi~lvGptGvGKTTtaaKLA~~~ 247 (432)
T PRK12724 222 QRKVVFFVGPTGSGKTTSIAKLAAKY 247 (432)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 45688999999999999999999765
No 255
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=97.03 E-value=0.0058 Score=56.41 Aligned_cols=24 Identities=29% Similarity=0.369 Sum_probs=21.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHhC
Q 022951 76 QWVFLGCPGVGKGTYASRLSNLLG 99 (289)
Q Consensus 76 ~Ivl~GppGsGKSTlak~La~~lg 99 (289)
.++|.||||+||||+++.+++.+.
T Consensus 38 ~lll~Gp~GtGKT~la~~~~~~l~ 61 (337)
T PRK12402 38 HLLVQGPPGSGKTAAVRALARELY 61 (337)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhc
Confidence 478999999999999999999873
No 256
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=97.02 E-value=0.00071 Score=64.64 Aligned_cols=33 Identities=21% Similarity=0.279 Sum_probs=28.3
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhCCCeeeh
Q 022951 73 KHVQWVFLGCPGVGKGTYASRLSNLLGVPHIAT 105 (289)
Q Consensus 73 ~~~~Ivl~GppGsGKSTlak~La~~lg~~~i~~ 105 (289)
.+.-++|.||||||||++++.+|..++..++..
T Consensus 178 ~pkgvLL~GppGTGKT~LAkalA~~l~~~fi~i 210 (398)
T PTZ00454 178 PPRGVLLYGPPGTGKTMLAKAVAHHTTATFIRV 210 (398)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHhcCCCEEEE
Confidence 456689999999999999999999998776653
No 257
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=97.02 E-value=0.0037 Score=58.28 Aligned_cols=27 Identities=26% Similarity=0.413 Sum_probs=24.0
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHHHhCC
Q 022951 74 HVQWVFLGCPGVGKGTYASRLSNLLGV 100 (289)
Q Consensus 74 ~~~Ivl~GppGsGKSTlak~La~~lg~ 100 (289)
++.++|.||||+||||+++.|++.+..
T Consensus 36 ~~~~Ll~G~~G~GKt~~a~~la~~l~~ 62 (355)
T TIGR02397 36 AHAYLFSGPRGTGKTSIARIFAKALNC 62 (355)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 467899999999999999999999854
No 258
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=97.02 E-value=0.00059 Score=53.96 Aligned_cols=25 Identities=40% Similarity=0.515 Sum_probs=19.9
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHHHh
Q 022951 74 HVQWVFLGCPGVGKGTYASRLSNLL 98 (289)
Q Consensus 74 ~~~Ivl~GppGsGKSTlak~La~~l 98 (289)
...++|.|++|+|||++++.+++.+
T Consensus 4 ~~~~~i~G~~G~GKT~~~~~~~~~~ 28 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLIKRLARQL 28 (131)
T ss_dssp ---EEEEE-TTSSHHHHHHHHHHHH
T ss_pred CcccEEEcCCCCCHHHHHHHHHHHh
Confidence 4578999999999999999999976
No 259
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=97.02 E-value=0.00064 Score=65.11 Aligned_cols=31 Identities=29% Similarity=0.495 Sum_probs=27.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhCCCeeeh
Q 022951 75 VQWVFLGCPGVGKGTYASRLSNLLGVPHIAT 105 (289)
Q Consensus 75 ~~Ivl~GppGsGKSTlak~La~~lg~~~i~~ 105 (289)
..|+|.||||+|||++|+.||+.++.++...
T Consensus 117 ~~iLL~GP~GsGKT~lAraLA~~l~~pf~~~ 147 (413)
T TIGR00382 117 SNILLIGPTGSGKTLLAQTLARILNVPFAIA 147 (413)
T ss_pred ceEEEECCCCcCHHHHHHHHHHhcCCCeEEe
Confidence 4789999999999999999999999887654
No 260
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=97.02 E-value=0.00074 Score=57.00 Aligned_cols=26 Identities=38% Similarity=0.545 Sum_probs=23.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhCC
Q 022951 75 VQWVFLGCPGVGKGTYASRLSNLLGV 100 (289)
Q Consensus 75 ~~Ivl~GppGsGKSTlak~La~~lg~ 100 (289)
..++|+||+|+|||.+|+.|++.+..
T Consensus 4 ~~~ll~GpsGvGKT~la~~la~~l~~ 29 (171)
T PF07724_consen 4 SNFLLAGPSGVGKTELAKALAELLFV 29 (171)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHT-
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 56889999999999999999999884
No 261
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.02 E-value=0.0036 Score=62.72 Aligned_cols=28 Identities=32% Similarity=0.489 Sum_probs=25.0
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHHHhCCC
Q 022951 74 HVQWVFLGCPGVGKGTYASRLSNLLGVP 101 (289)
Q Consensus 74 ~~~Ivl~GppGsGKSTlak~La~~lg~~ 101 (289)
++.++|+||+|+||||+++.|++.+++.
T Consensus 38 ~hayLf~Gp~G~GKtt~A~~lak~l~c~ 65 (576)
T PRK14965 38 AHAFLFTGARGVGKTSTARILAKALNCE 65 (576)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhhcCC
Confidence 4668999999999999999999998754
No 262
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=97.01 E-value=0.009 Score=57.05 Aligned_cols=28 Identities=29% Similarity=0.592 Sum_probs=24.8
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHHHhCCC
Q 022951 74 HVQWVFLGCPGVGKGTYASRLSNLLGVP 101 (289)
Q Consensus 74 ~~~Ivl~GppGsGKSTlak~La~~lg~~ 101 (289)
++-++|.||+|+||||+|+.||+.+.+.
T Consensus 36 ~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~ 63 (394)
T PRK07940 36 THAWLFTGPPGSGRSVAARAFAAALQCT 63 (394)
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHhCCC
Confidence 5678999999999999999999988654
No 263
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=97.01 E-value=0.00054 Score=53.13 Aligned_cols=23 Identities=39% Similarity=0.501 Sum_probs=20.4
Q ss_pred EEEEcCCCCCHHHHHHHHHHHhC
Q 022951 77 WVFLGCPGVGKGTYASRLSNLLG 99 (289)
Q Consensus 77 Ivl~GppGsGKSTlak~La~~lg 99 (289)
|.|.|+||+|||++++.|++.+.
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l~ 23 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDLL 23 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHHH
Confidence 57899999999999999988763
No 264
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=97.01 E-value=0.00072 Score=58.37 Aligned_cols=25 Identities=32% Similarity=0.405 Sum_probs=22.8
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHHHh
Q 022951 74 HVQWVFLGCPGVGKGTYASRLSNLL 98 (289)
Q Consensus 74 ~~~Ivl~GppGsGKSTlak~La~~l 98 (289)
|.+|+|.||+|+||||.+-+||..+
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~~ 25 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAARL 25 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEEEEECCCCCchHhHHHHHHHHH
Confidence 5689999999999999999999877
No 265
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.00 E-value=0.0053 Score=60.45 Aligned_cols=27 Identities=30% Similarity=0.394 Sum_probs=24.2
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHHHhCC
Q 022951 74 HVQWVFLGCPGVGKGTYASRLSNLLGV 100 (289)
Q Consensus 74 ~~~Ivl~GppGsGKSTlak~La~~lg~ 100 (289)
++.|+|+||||+||||+|+.|++.+.+
T Consensus 36 ~ha~Lf~GppGtGKTTlA~~lA~~l~c 62 (504)
T PRK14963 36 GHAYLFSGPRGVGKTTTARLIAMAVNC 62 (504)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHhc
Confidence 466899999999999999999999864
No 266
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=96.97 E-value=0.0051 Score=63.38 Aligned_cols=32 Identities=28% Similarity=0.387 Sum_probs=27.8
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHHHhCCCeeeh
Q 022951 74 HVQWVFLGCPGVGKGTYASRLSNLLGVPHIAT 105 (289)
Q Consensus 74 ~~~Ivl~GppGsGKSTlak~La~~lg~~~i~~ 105 (289)
+.-|+|.||||||||++|+.||..++..++..
T Consensus 487 ~~giLL~GppGtGKT~lakalA~e~~~~fi~v 518 (733)
T TIGR01243 487 PKGVLLFGPPGTGKTLLAKAVATESGANFIAV 518 (733)
T ss_pred CceEEEECCCCCCHHHHHHHHHHhcCCCEEEE
Confidence 44589999999999999999999998877653
No 267
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=96.97 E-value=0.00048 Score=55.30 Aligned_cols=29 Identities=38% Similarity=0.557 Sum_probs=21.3
Q ss_pred EEEEcCCCCCHHHHHHHHHHHhCCCeeeh
Q 022951 77 WVFLGCPGVGKGTYASRLSNLLGVPHIAT 105 (289)
Q Consensus 77 Ivl~GppGsGKSTlak~La~~lg~~~i~~ 105 (289)
++|.|+||+||||+++.||+.+|..+..+
T Consensus 2 vLleg~PG~GKT~la~~lA~~~~~~f~RI 30 (131)
T PF07726_consen 2 VLLEGVPGVGKTTLAKALARSLGLSFKRI 30 (131)
T ss_dssp EEEES---HHHHHHHHHHHHHTT--EEEE
T ss_pred EeeECCCccHHHHHHHHHHHHcCCceeEE
Confidence 68999999999999999999999876543
No 268
>PF05729 NACHT: NACHT domain
Probab=96.96 E-value=0.00073 Score=55.27 Aligned_cols=23 Identities=35% Similarity=0.481 Sum_probs=21.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHh
Q 022951 76 QWVFLGCPGVGKGTYASRLSNLL 98 (289)
Q Consensus 76 ~Ivl~GppGsGKSTlak~La~~l 98 (289)
.++|.|+||+||||+++.++..+
T Consensus 2 ~l~I~G~~G~GKStll~~~~~~~ 24 (166)
T PF05729_consen 2 VLWISGEPGSGKSTLLRKLAQQL 24 (166)
T ss_pred EEEEECCCCCChHHHHHHHHHHH
Confidence 57899999999999999999876
No 269
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=96.95 E-value=0.00098 Score=60.97 Aligned_cols=28 Identities=36% Similarity=0.558 Sum_probs=24.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhCCCe
Q 022951 75 VQWVFLGCPGVGKGTYASRLSNLLGVPH 102 (289)
Q Consensus 75 ~~Ivl~GppGsGKSTlak~La~~lg~~~ 102 (289)
..++|+||||+|||++++.+++.++...
T Consensus 31 ~~~ll~Gp~G~GKT~la~~ia~~~~~~~ 58 (305)
T TIGR00635 31 DHLLLYGPPGLGKTTLAHIIANEMGVNL 58 (305)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCCCE
Confidence 3478999999999999999999987654
No 270
>PHA02244 ATPase-like protein
Probab=96.93 E-value=0.00072 Score=63.61 Aligned_cols=36 Identities=17% Similarity=0.336 Sum_probs=30.7
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHHHhCCCeeehHHHH
Q 022951 74 HVQWVFLGCPGVGKGTYASRLSNLLGVPHIATGDLL 109 (289)
Q Consensus 74 ~~~Ivl~GppGsGKSTlak~La~~lg~~~i~~d~l~ 109 (289)
..-|+|.||||||||++|+.|+..++.+++.+..+.
T Consensus 119 ~~PVLL~GppGtGKTtLA~aLA~~lg~pfv~In~l~ 154 (383)
T PHA02244 119 NIPVFLKGGAGSGKNHIAEQIAEALDLDFYFMNAIM 154 (383)
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHhCCCEEEEecCh
Confidence 345788999999999999999999999988775544
No 271
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=96.92 E-value=0.00085 Score=65.90 Aligned_cols=32 Identities=28% Similarity=0.464 Sum_probs=27.9
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHHHhCCCeeeh
Q 022951 74 HVQWVFLGCPGVGKGTYASRLSNLLGVPHIAT 105 (289)
Q Consensus 74 ~~~Ivl~GppGsGKSTlak~La~~lg~~~i~~ 105 (289)
+.-++|.||||+|||++++.||...+.+++..
T Consensus 88 ~~giLL~GppGtGKT~la~alA~~~~~~~~~i 119 (495)
T TIGR01241 88 PKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSI 119 (495)
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHcCCCeeec
Confidence 44589999999999999999999998877654
No 272
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=96.91 E-value=0.00084 Score=67.30 Aligned_cols=32 Identities=28% Similarity=0.488 Sum_probs=28.5
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhCCCeee
Q 022951 73 KHVQWVFLGCPGVGKGTYASRLSNLLGVPHIA 104 (289)
Q Consensus 73 ~~~~Ivl~GppGsGKSTlak~La~~lg~~~i~ 104 (289)
+..++||.||||+|||++++.+|+.+|-.|+.
T Consensus 349 kGpILcLVGPPGVGKTSLgkSIA~al~RkfvR 380 (782)
T COG0466 349 KGPILCLVGPPGVGKTSLGKSIAKALGRKFVR 380 (782)
T ss_pred CCcEEEEECCCCCCchhHHHHHHHHhCCCEEE
Confidence 45899999999999999999999999876653
No 273
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=96.91 E-value=0.0027 Score=53.93 Aligned_cols=40 Identities=35% Similarity=0.534 Sum_probs=31.6
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHHh-----CCCeeehHHHHHHH
Q 022951 73 KHVQWVFLGCPGVGKGTYASRLSNLL-----GVPHIATGDLLDEI 112 (289)
Q Consensus 73 ~~~~Ivl~GppGsGKSTlak~La~~l-----g~~~i~~d~l~~~~ 112 (289)
+...++|.|++|+|||.+|..++.++ .+.+++..+++..+
T Consensus 46 ~~~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~~~~L~~~l 90 (178)
T PF01695_consen 46 NGENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFITASDLLDEL 90 (178)
T ss_dssp C--EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHHHHH
T ss_pred cCeEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEeecCceeccc
Confidence 45679999999999999999998754 46788999998654
No 274
>PHA03134 thymidine kinase; Provisional
Probab=96.91 E-value=0.027 Score=52.32 Aligned_cols=25 Identities=24% Similarity=0.360 Sum_probs=21.7
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHH
Q 022951 73 KHVQWVFLGCPGVGKGTYASRLSNL 97 (289)
Q Consensus 73 ~~~~Ivl~GppGsGKSTlak~La~~ 97 (289)
.-.+|.|.|+.|.||||+++.|+..
T Consensus 12 ~~~rvYlDG~~GvGKTT~~~~l~~~ 36 (340)
T PHA03134 12 RIVRIYLDGAYGIGKSTTGRVMASA 36 (340)
T ss_pred cEEEEEEeCCCcCCHHHHHHHHHHh
Confidence 3467899999999999999999874
No 275
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=96.90 E-value=0.0011 Score=60.40 Aligned_cols=25 Identities=40% Similarity=0.692 Sum_probs=21.7
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHHHh
Q 022951 74 HVQWVFLGCPGVGKGTYASRLSNLL 98 (289)
Q Consensus 74 ~~~Ivl~GppGsGKSTlak~La~~l 98 (289)
...++|.||||+||||+|+.+++.+
T Consensus 58 ~~~vll~G~pGTGKT~lA~~ia~~l 82 (284)
T TIGR02880 58 TLHMSFTGNPGTGKTTVALRMAQIL 82 (284)
T ss_pred CceEEEEcCCCCCHHHHHHHHHHHH
Confidence 3468999999999999998888766
No 276
>KOG4235 consensus Mitochondrial thymidine kinase 2/deoxyguanosine kinase [Nucleotide transport and metabolism]
Probab=96.90 E-value=0.046 Score=46.99 Aligned_cols=24 Identities=21% Similarity=0.214 Sum_probs=21.7
Q ss_pred CCcEEEEEecCHHHHHHHHhcccc
Q 022951 159 DIDLVINLKLREEALLAKCLGRRI 182 (289)
Q Consensus 159 ~~d~vI~Ld~~~e~l~~Rl~~R~~ 182 (289)
.+|.+|||.++++++.+|+..|..
T Consensus 153 ~~dgiIYLrasPetc~~Ri~~R~R 176 (244)
T KOG4235|consen 153 SLDGIIYLRASPETCYKRIYLRAR 176 (244)
T ss_pred ccceEEEeecChHHHHHHHHHHhh
Confidence 489999999999999999998864
No 277
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=96.89 E-value=0.0011 Score=61.65 Aligned_cols=30 Identities=33% Similarity=0.461 Sum_probs=25.7
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHHHhCCCee
Q 022951 74 HVQWVFLGCPGVGKGTYASRLSNLLGVPHI 103 (289)
Q Consensus 74 ~~~Ivl~GppGsGKSTlak~La~~lg~~~i 103 (289)
+..++|.||||+||||+|+.+++.++..+.
T Consensus 51 ~~~~ll~GppG~GKT~la~~ia~~l~~~~~ 80 (328)
T PRK00080 51 LDHVLLYGPPGLGKTTLANIIANEMGVNIR 80 (328)
T ss_pred CCcEEEECCCCccHHHHHHHHHHHhCCCeE
Confidence 345789999999999999999999987543
No 278
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=96.89 E-value=0.0011 Score=64.07 Aligned_cols=32 Identities=22% Similarity=0.318 Sum_probs=27.4
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhCCCeee
Q 022951 73 KHVQWVFLGCPGVGKGTYASRLSNLLGVPHIA 104 (289)
Q Consensus 73 ~~~~Ivl~GppGsGKSTlak~La~~lg~~~i~ 104 (289)
.+.-++|.||||+|||++|+.+|..++..++.
T Consensus 216 ~p~gVLL~GPPGTGKT~LAraIA~el~~~fi~ 247 (438)
T PTZ00361 216 PPKGVILYGPPGTGKTLLAKAVANETSATFLR 247 (438)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhhCCCEEE
Confidence 34568899999999999999999998876654
No 279
>PLN03046 D-glycerate 3-kinase; Provisional
Probab=96.89 E-value=0.00081 Score=64.19 Aligned_cols=37 Identities=22% Similarity=0.248 Sum_probs=29.9
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhC-----CCeeehHHHH
Q 022951 73 KHVQWVFLGCPGVGKGTYASRLSNLLG-----VPHIATGDLL 109 (289)
Q Consensus 73 ~~~~Ivl~GppGsGKSTlak~La~~lg-----~~~i~~d~l~ 109 (289)
++++|.|.|++||||||+++.|...+. ...|+.|++.
T Consensus 211 ~PlIIGIsG~qGSGKSTLa~~L~~lL~~~g~~vgvISiDDfY 252 (460)
T PLN03046 211 PPLVIGFSAPQGCGKTTLVFALDYLFRVTGRKSATLSIDDFY 252 (460)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhcccCCceEEEEECCcc
Confidence 578899999999999999999987662 3456666665
No 280
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=96.87 E-value=0.0012 Score=57.51 Aligned_cols=37 Identities=14% Similarity=0.109 Sum_probs=29.0
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHHh-----CCCeeehHHHH
Q 022951 73 KHVQWVFLGCPGVGKGTYASRLSNLL-----GVPHIATGDLL 109 (289)
Q Consensus 73 ~~~~Ivl~GppGsGKSTlak~La~~l-----g~~~i~~d~l~ 109 (289)
.+..++|+|++|+|||++++.++... .+.+++..++.
T Consensus 37 ~~~~lll~G~~G~GKT~la~~~~~~~~~~~~~~~~i~~~~~~ 78 (226)
T TIGR03420 37 GDRFLYLWGESGSGKSHLLQAACAAAEERGKSAIYLPLAELA 78 (226)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEeHHHHH
Confidence 35678999999999999999999875 24566665554
No 281
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=96.86 E-value=0.0034 Score=63.88 Aligned_cols=109 Identities=19% Similarity=0.224 Sum_probs=64.0
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHHHhCCCeeeh--HHHH-----------HHHH---------------------Hc-C
Q 022951 72 GKHVQWVFLGCPGVGKGTYASRLSNLLGVPHIAT--GDLL-----------DEIV---------------------SQ-G 116 (289)
Q Consensus 72 ~~~~~Ivl~GppGsGKSTlak~La~~lg~~~i~~--d~l~-----------~~~l---------------------~~-g 116 (289)
.-|.=++|+||||+|||-+||++|.+-|++++++ .+.+ +++. .. |
T Consensus 342 KiPkGvLL~GPPGTGKTLLAKAiAGEAgVPF~svSGSEFvE~~~g~~asrvr~lf~~ar~~aP~iifideida~~~~r~G 421 (774)
T KOG0731|consen 342 KIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSVSGSEFVEMFVGVGASRVRDLFPLARKNAPSIIFIDEIDAVGRKRGG 421 (774)
T ss_pred cCcCceEEECCCCCcHHHHHHHHhcccCCceeeechHHHHHHhcccchHHHHHHHHHhhccCCeEEEecccccccccccc
Confidence 3455689999999999999999999999999874 3444 1111 01 1
Q ss_pred --CccCHHHHHHHHHHHHHcccc-cCCceEEEcC-cccH----HHHhhcCCCcEEEEEecCHHHHHHHHhcc
Q 022951 117 --KLVSDEIIINLLSKRLEAGEA-KGEAGFILDG-FPRT----EILEGVTDIDLVINLKLREEALLAKCLGR 180 (289)
Q Consensus 117 --~~v~~~~~~~ll~~~l~~~~~-~~~~g~Ildg-~p~~----~~l~~~~~~d~vI~Ld~~~e~l~~Rl~~R 180 (289)
.....+.-...+...+-+.+- ....++|+.+ ..+. ..+-+-.++|-.|+++.|...-...+.+-
T Consensus 422 ~~~~~~~~e~e~tlnQll~emDgf~~~~~vi~~a~tnr~d~ld~allrpGRfdr~i~i~~p~~~~r~~i~~~ 493 (774)
T KOG0731|consen 422 KGTGGGQDEREQTLNQLLVEMDGFETSKGVIVLAATNRPDILDPALLRPGRFDRQIQIDLPDVKGRASILKV 493 (774)
T ss_pred cccCCCChHHHHHHHHHHHHhcCCcCCCcEEEEeccCCccccCHHhcCCCccccceeccCCchhhhHHHHHH
Confidence 112222222222222222111 1134666665 3332 34444456899999999987776666543
No 282
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.86 E-value=0.011 Score=59.48 Aligned_cols=29 Identities=28% Similarity=0.415 Sum_probs=25.2
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHHHhCCCe
Q 022951 74 HVQWVFLGCPGVGKGTYASRLSNLLGVPH 102 (289)
Q Consensus 74 ~~~Ivl~GppGsGKSTlak~La~~lg~~~ 102 (289)
+..++|+||+|+||||+++.|++.+++..
T Consensus 38 ~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~ 66 (585)
T PRK14950 38 AHAYLFTGPRGVGKTSTARILAKAVNCTT 66 (585)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhcCCC
Confidence 45689999999999999999999987543
No 283
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.86 E-value=0.0032 Score=61.33 Aligned_cols=72 Identities=18% Similarity=0.293 Sum_probs=48.3
Q ss_pred cchhHHHHHHhhhccCCCCCCCCchhhccccccCccccCCCccccCCCCCCCceEEEEEcCCCCCHHHHHHHHHHHhCC-
Q 022951 22 TSLQTLIFLSRALSTSCENTGIDPKAKAGAAAALPLNNNNSKKKKEGKGEGKHVQWVFLGCPGVGKGTYASRLSNLLGV- 100 (289)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ivl~GppGsGKSTlak~La~~lg~- 100 (289)
....|..|.+|||++-- -||. ..+.+.. .+-.=|+|.||||+|||-+|++|-+.++.
T Consensus 226 Ld~EFs~IFRRAFAsRv-----Fpp~---vie~lGi--------------~HVKGiLLyGPPGTGKTLiARqIGkMLNAr 283 (744)
T KOG0741|consen 226 LDKEFSDIFRRAFASRV-----FPPE---VIEQLGI--------------KHVKGILLYGPPGTGKTLIARQIGKMLNAR 283 (744)
T ss_pred chHHHHHHHHHHHHhhc-----CCHH---HHHHcCc--------------cceeeEEEECCCCCChhHHHHHHHHHhcCC
Confidence 45678899999997421 1111 1111111 12344889999999999999999999975
Q ss_pred --CeeehHHHHHHHHHc
Q 022951 101 --PHIATGDLLDEIVSQ 115 (289)
Q Consensus 101 --~~i~~d~l~~~~l~~ 115 (289)
..++.-+++.+|+-.
T Consensus 284 ePKIVNGPeIL~KYVGe 300 (744)
T KOG0741|consen 284 EPKIVNGPEILNKYVGE 300 (744)
T ss_pred CCcccCcHHHHHHhhcc
Confidence 567777777666543
No 284
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=96.86 E-value=0.00091 Score=58.25 Aligned_cols=23 Identities=35% Similarity=0.385 Sum_probs=20.4
Q ss_pred CceEEEEEcCCCCCHHHHHHHHH
Q 022951 73 KHVQWVFLGCPGVGKGTYASRLS 95 (289)
Q Consensus 73 ~~~~Ivl~GppGsGKSTlak~La 95 (289)
+.-+++|+||+||||||+.+.|.
T Consensus 27 ~Gevv~iiGpSGSGKSTlLRclN 49 (240)
T COG1126 27 KGEVVVIIGPSGSGKSTLLRCLN 49 (240)
T ss_pred CCCEEEEECCCCCCHHHHHHHHH
Confidence 45678999999999999999985
No 285
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.84 E-value=0.0097 Score=59.97 Aligned_cols=29 Identities=28% Similarity=0.419 Sum_probs=25.5
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHHHhCCCe
Q 022951 74 HVQWVFLGCPGVGKGTYASRLSNLLGVPH 102 (289)
Q Consensus 74 ~~~Ivl~GppGsGKSTlak~La~~lg~~~ 102 (289)
++-++|.||+|+||||+|+.||+.+++..
T Consensus 38 ~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~ 66 (620)
T PRK14954 38 GHGYIFSGLRGVGKTTAARVFAKAVNCQR 66 (620)
T ss_pred CeeEEEECCCCCCHHHHHHHHHHHhCCCC
Confidence 45589999999999999999999998743
No 286
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=96.84 E-value=0.0014 Score=55.47 Aligned_cols=27 Identities=22% Similarity=0.170 Sum_probs=23.4
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhC
Q 022951 73 KHVQWVFLGCPGVGKGTYASRLSNLLG 99 (289)
Q Consensus 73 ~~~~Ivl~GppGsGKSTlak~La~~lg 99 (289)
.+.++.|+|++||||||+++.|...+.
T Consensus 5 ~~~ii~ivG~sgsGKTTLi~~li~~l~ 31 (173)
T PRK10751 5 MIPLLAIAAWSGTGKTTLLKKLIPALC 31 (173)
T ss_pred CceEEEEECCCCChHHHHHHHHHHHHh
Confidence 456788999999999999999998774
No 287
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=96.83 E-value=0.0011 Score=66.55 Aligned_cols=42 Identities=26% Similarity=0.432 Sum_probs=33.4
Q ss_pred CCCCCCceEEEEEcCCCCCHHHHHHHHHHHhCCCe--eehHHHH
Q 022951 68 GKGEGKHVQWVFLGCPGVGKGTYASRLSNLLGVPH--IATGDLL 109 (289)
Q Consensus 68 ~~~~~~~~~Ivl~GppGsGKSTlak~La~~lg~~~--i~~d~l~ 109 (289)
.....+.++++|.||||+|||++++.+|..+|-.| |+++-+-
T Consensus 432 Lrgs~qGkIlCf~GPPGVGKTSI~kSIA~ALnRkFfRfSvGG~t 475 (906)
T KOG2004|consen 432 LRGSVQGKILCFVGPPGVGKTSIAKSIARALNRKFFRFSVGGMT 475 (906)
T ss_pred hcccCCCcEEEEeCCCCCCcccHHHHHHHHhCCceEEEeccccc
Confidence 34455789999999999999999999999998555 5554443
No 288
>PF02367 UPF0079: Uncharacterised P-loop hydrolase UPF0079; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop. They are probably essential to bacteria as members are found in all genomes so far sequenced and no equivalent genes have been found in the archaea and eukaryotes, suggesting the protein may be involved in cell wall biosynthesis. The sequence of YjeE, from Haemophilus influenzae, has been determined to 1.7-A resolution. The protein has a nucleotide-binding fold with a four-stranded parallel beta-sheet flanked by antiparallel beta-strands on each side. The topology of the beta-sheet is unique among P-loop proteins and has features of different families of enzymes. ADP has been shown to bind to the P-loop in the presence of Mg2+ and ATPase activity has been confirmed by kinetic measurements [].; PDB: 1HTW_A 1FL9_A.
Probab=96.82 E-value=0.0016 Score=52.03 Aligned_cols=29 Identities=28% Similarity=0.389 Sum_probs=24.3
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhCCC
Q 022951 73 KHVQWVFLGCPGVGKGTYASRLSNLLGVP 101 (289)
Q Consensus 73 ~~~~Ivl~GppGsGKSTlak~La~~lg~~ 101 (289)
...+|+|.|+-||||||+++.|++.+|..
T Consensus 14 ~g~vi~L~GdLGaGKTtf~r~l~~~lg~~ 42 (123)
T PF02367_consen 14 PGDVILLSGDLGAGKTTFVRGLARALGID 42 (123)
T ss_dssp S-EEEEEEESTTSSHHHHHHHHHHHTT--
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHcCCC
Confidence 35789999999999999999999999753
No 289
>PF01712 dNK: Deoxynucleoside kinase; InterPro: IPR002624 This family consists of various deoxynucleoside kinases including cytidine (2.7.1.74 from EC), guanosine (2.7.1.113 from EC), adenosine (2.7.1.76 from EC) and thymidine kinase (2.7.1.21 from EC, which also phosphorylates deoxyuridine and deoxycytosine. These enzymes catalyse the production of deoxynucleotide 5'-monophosphate from a deoxynucleoside, using ATP and yielding ADP in the process.; GO: 0005524 ATP binding, 0016773 phosphotransferase activity, alcohol group as acceptor, 0006139 nucleobase-containing compound metabolic process; PDB: 2JAS_B 2JAT_B 2JAQ_A 2VP4_D 1ZMX_F 1ZM7_C 1OE0_B 2VP9_C 2VPP_B 2VP6_G ....
Probab=96.81 E-value=0.0015 Score=53.64 Aligned_cols=26 Identities=27% Similarity=0.316 Sum_probs=20.1
Q ss_pred cCC-CcEEEEEecCHHHHHHHHhcccc
Q 022951 157 VTD-IDLVINLKLREEALLAKCLGRRI 182 (289)
Q Consensus 157 ~~~-~d~vI~Ld~~~e~l~~Rl~~R~~ 182 (289)
+.. ||++|||++|++++++|+.+|+.
T Consensus 64 ~~~~pdl~IYL~~~~e~~~~RI~kRgR 90 (146)
T PF01712_consen 64 IPKSPDLIIYLDASPETCLERIKKRGR 90 (146)
T ss_dssp CCHH-SEEEEEE--HHHHHHHHHHCTT
T ss_pred hhccCCeEEEEeCCHHHHHHHHHHhCC
Confidence 345 89999999999999999999954
No 290
>PRK13695 putative NTPase; Provisional
Probab=96.79 E-value=0.0013 Score=55.35 Aligned_cols=24 Identities=38% Similarity=0.605 Sum_probs=21.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHh
Q 022951 75 VQWVFLGCPGVGKGTYASRLSNLL 98 (289)
Q Consensus 75 ~~Ivl~GppGsGKSTlak~La~~l 98 (289)
|+|+|+|++||||||+++.|+..+
T Consensus 1 ~~i~ltG~~G~GKTTll~~i~~~l 24 (174)
T PRK13695 1 MKIGITGPPGVGKTTLVLKIAELL 24 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHH
Confidence 689999999999999999987765
No 291
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=96.78 E-value=0.0012 Score=58.96 Aligned_cols=26 Identities=27% Similarity=0.230 Sum_probs=23.3
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHHHhC
Q 022951 74 HVQWVFLGCPGVGKGTYASRLSNLLG 99 (289)
Q Consensus 74 ~~~Ivl~GppGsGKSTlak~La~~lg 99 (289)
+..++|+|++|+||||+++.++..+.
T Consensus 43 ~~~~~l~G~~G~GKTtl~~~l~~~l~ 68 (269)
T TIGR03015 43 EGFILITGEVGAGKTTLIRNLLKRLD 68 (269)
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHhcC
Confidence 45789999999999999999999875
No 292
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=96.77 E-value=0.0064 Score=60.69 Aligned_cols=28 Identities=29% Similarity=0.428 Sum_probs=25.0
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHHHhCCC
Q 022951 74 HVQWVFLGCPGVGKGTYASRLSNLLGVP 101 (289)
Q Consensus 74 ~~~Ivl~GppGsGKSTlak~La~~lg~~ 101 (289)
++.++|+||+|+||||+|+.|++.+++.
T Consensus 38 ~hayLf~Gp~G~GKTt~Ar~lAk~L~c~ 65 (563)
T PRK06647 38 ANAYIFSGPRGVGKTSSARAFARCLNCV 65 (563)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhhccc
Confidence 4568999999999999999999998764
No 293
>PRK06620 hypothetical protein; Validated
Probab=96.77 E-value=0.0011 Score=57.95 Aligned_cols=30 Identities=20% Similarity=0.141 Sum_probs=25.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhCCCeee
Q 022951 75 VQWVFLGCPGVGKGTYASRLSNLLGVPHIA 104 (289)
Q Consensus 75 ~~Ivl~GppGsGKSTlak~La~~lg~~~i~ 104 (289)
..++|+||||||||++++.+++..+..+++
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~ 74 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNLSNAYIIK 74 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhccCCEEcc
Confidence 347899999999999999999888765554
No 294
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=96.75 E-value=0.0015 Score=50.73 Aligned_cols=23 Identities=39% Similarity=0.468 Sum_probs=20.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHh
Q 022951 76 QWVFLGCPGVGKGTYASRLSNLL 98 (289)
Q Consensus 76 ~Ivl~GppGsGKSTlak~La~~l 98 (289)
+|+|+|++||||||+.+.|....
T Consensus 1 kI~V~G~~g~GKTsLi~~l~~~~ 23 (119)
T PF08477_consen 1 KIVVLGDSGVGKTSLIRRLCGGE 23 (119)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred CEEEECcCCCCHHHHHHHHhcCC
Confidence 58999999999999999998754
No 295
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.75 E-value=0.0071 Score=60.86 Aligned_cols=36 Identities=28% Similarity=0.425 Sum_probs=30.9
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHHHhCCCeeeh--HHHH
Q 022951 74 HVQWVFLGCPGVGKGTYASRLSNLLGVPHIAT--GDLL 109 (289)
Q Consensus 74 ~~~Ivl~GppGsGKSTlak~La~~lg~~~i~~--d~l~ 109 (289)
+.-|++.||||||||.+|..+|...++.+|++ -+++
T Consensus 701 ~~giLLyGppGcGKT~la~a~a~~~~~~fisvKGPElL 738 (952)
T KOG0735|consen 701 RTGILLYGPPGCGKTLLASAIASNSNLRFISVKGPELL 738 (952)
T ss_pred ccceEEECCCCCcHHHHHHHHHhhCCeeEEEecCHHHH
Confidence 34589999999999999999999999999885 3455
No 296
>PRK07952 DNA replication protein DnaC; Validated
Probab=96.75 E-value=0.0071 Score=54.01 Aligned_cols=100 Identities=21% Similarity=0.253 Sum_probs=57.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHh---C--CCeeehHHHHHHHHHcCCccCHHHHHHHHHHHHHcccccCCceEEEcCcc
Q 022951 75 VQWVFLGCPGVGKGTYASRLSNLL---G--VPHIATGDLLDEIVSQGKLVSDEIIINLLSKRLEAGEAKGEAGFILDGFP 149 (289)
Q Consensus 75 ~~Ivl~GppGsGKSTlak~La~~l---g--~~~i~~d~l~~~~l~~g~~v~~~~~~~ll~~~l~~~~~~~~~g~Ildg~p 149 (289)
..++|.|+||+|||+++..|+..+ | +.+++..+++..+...-. ..+.....++. .+.. .+-+|||.+.
T Consensus 100 ~~~~l~G~~GtGKThLa~aia~~l~~~g~~v~~it~~~l~~~l~~~~~-~~~~~~~~~l~-~l~~-----~dlLvIDDig 172 (244)
T PRK07952 100 ASFIFSGKPGTGKNHLAAAICNELLLRGKSVLIITVADIMSAMKDTFS-NSETSEEQLLN-DLSN-----VDLLVIDEIG 172 (244)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEHHHHHHHHHHHHh-hccccHHHHHH-Hhcc-----CCEEEEeCCC
Confidence 368999999999999999999987 2 456788888744322100 00111112222 2322 2478889754
Q ss_pred cH-------HHHhhc------CCCcEEEEEecCHHHHHHHHhccc
Q 022951 150 RT-------EILEGV------TDIDLVINLKLREEALLAKCLGRR 181 (289)
Q Consensus 150 ~~-------~~l~~~------~~~d~vI~Ld~~~e~l~~Rl~~R~ 181 (289)
.. +.+-.+ .....+|-=+.+.+.+.+++-.|-
T Consensus 173 ~~~~s~~~~~~l~~Ii~~Ry~~~~~tiitSNl~~~~l~~~~g~ri 217 (244)
T PRK07952 173 VQTESRYEKVIINQIVDRRSSSKRPTGMLTNSNMEEMTKLLGERV 217 (244)
T ss_pred CCCCCHHHHHHHHHHHHHHHhCCCCEEEeCCCCHHHHHHHhChHH
Confidence 33 111111 124556666777777776655443
No 297
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=96.75 E-value=0.0012 Score=58.67 Aligned_cols=26 Identities=31% Similarity=0.321 Sum_probs=22.3
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHHh
Q 022951 73 KHVQWVFLGCPGVGKGTYASRLSNLL 98 (289)
Q Consensus 73 ~~~~Ivl~GppGsGKSTlak~La~~l 98 (289)
+.=++.|.||+||||||+.+.+|.-.
T Consensus 28 ~GEfvsilGpSGcGKSTLLriiAGL~ 53 (248)
T COG1116 28 KGEFVAILGPSGCGKSTLLRLIAGLE 53 (248)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34578999999999999999998644
No 298
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=96.75 E-value=0.0014 Score=56.55 Aligned_cols=24 Identities=21% Similarity=0.308 Sum_probs=21.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHhC
Q 022951 76 QWVFLGCPGVGKGTYASRLSNLLG 99 (289)
Q Consensus 76 ~Ivl~GppGsGKSTlak~La~~lg 99 (289)
.|+|+||+||||||+.+.|...+.
T Consensus 3 lilI~GptGSGKTTll~~ll~~~~ 26 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMIDYIN 26 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhh
Confidence 589999999999999999887764
No 299
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=96.74 E-value=0.002 Score=56.36 Aligned_cols=35 Identities=14% Similarity=0.166 Sum_probs=28.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHh-----CCCeeehHHHH
Q 022951 75 VQWVFLGCPGVGKGTYASRLSNLL-----GVPHIATGDLL 109 (289)
Q Consensus 75 ~~Ivl~GppGsGKSTlak~La~~l-----g~~~i~~d~l~ 109 (289)
..++|+|++|+|||++++.++... .+.+++..+..
T Consensus 43 ~~~~l~G~~G~GKT~La~ai~~~~~~~~~~~~~i~~~~~~ 82 (227)
T PRK08903 43 RFFYLWGEAGSGRSHLLQALVADASYGGRNARYLDAASPL 82 (227)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEehHHhH
Confidence 467899999999999999999876 55666665543
No 300
>PRK11784 tRNA 2-selenouridine synthase; Provisional
Probab=96.74 E-value=0.0072 Score=56.67 Aligned_cols=104 Identities=18% Similarity=0.183 Sum_probs=70.1
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHHHhCCCeeehHHHHHHHH----HcC-CccCHHHHHHHHHHHHHcccccCCceEEEcCc
Q 022951 74 HVQWVFLGCPGVGKGTYASRLSNLLGVPHIATGDLLDEIV----SQG-KLVSDEIIINLLSKRLEAGEAKGEAGFILDGF 148 (289)
Q Consensus 74 ~~~Ivl~GppGsGKSTlak~La~~lg~~~i~~d~l~~~~l----~~g-~~v~~~~~~~ll~~~l~~~~~~~~~g~Ildg~ 148 (289)
...+++.|++|||||++...|.+. +...+|...+.+..= .-+ ..-+...+...+...+..... .+.+++++-
T Consensus 141 ~~~ivl~G~TGsGKT~iL~~L~~~-~~~vlDlE~~aehrGS~fG~~~~~qpsQ~~Fe~~l~~~l~~~~~--~~~i~vE~E 217 (345)
T PRK11784 141 FPLVVLGGNTGSGKTELLQALANA-GAQVLDLEGLANHRGSSFGRLGGPQPSQKDFENLLAEALLKLDP--ARPIVVEDE 217 (345)
T ss_pred CceEecCCCCcccHHHHHHHHHhc-CCeEEECCchhhhccccccCCCCCCcchHHHHHHHHHHHHcCCC--CCeEEEEec
Confidence 345789999999999999999765 777888866652210 001 122345567777777766553 357777763
Q ss_pred ccH--------HHHhhcCCCcEEEEEecCHHHHHHHHhccc
Q 022951 149 PRT--------EILEGVTDIDLVINLKLREEALLAKCLGRR 181 (289)
Q Consensus 149 p~~--------~~l~~~~~~d~vI~Ld~~~e~l~~Rl~~R~ 181 (289)
.+. ..++.+. ...+|++++|.+..++|+..--
T Consensus 218 s~~IG~~~lP~~l~~~m~-~~~~v~i~~~~e~Rv~~l~~~Y 257 (345)
T PRK11784 218 SRRIGRVHLPEALYEAMQ-QAPIVVVEAPLEERVERLLEDY 257 (345)
T ss_pred cccccCccCCHHHHHHHh-hCCEEEEECCHHHHHHHHHHHh
Confidence 333 3444443 3568899999999999998653
No 301
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=96.73 E-value=0.0012 Score=55.48 Aligned_cols=26 Identities=23% Similarity=0.284 Sum_probs=22.2
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHHh
Q 022951 73 KHVQWVFLGCPGVGKGTYASRLSNLL 98 (289)
Q Consensus 73 ~~~~Ivl~GppGsGKSTlak~La~~l 98 (289)
+.-+|.|+||+||||||+.|.+|...
T Consensus 28 ~Ge~iaitGPSG~GKStllk~va~Li 53 (223)
T COG4619 28 AGEFIAITGPSGCGKSTLLKIVASLI 53 (223)
T ss_pred CCceEEEeCCCCccHHHHHHHHHhcc
Confidence 34578999999999999999998754
No 302
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=96.73 E-value=0.002 Score=59.95 Aligned_cols=45 Identities=22% Similarity=0.390 Sum_probs=36.6
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhCCCee--ehHHHHHHHHHcCC
Q 022951 73 KHVQWVFLGCPGVGKGTYASRLSNLLGVPHI--ATGDLLDEIVSQGK 117 (289)
Q Consensus 73 ~~~~Ivl~GppGsGKSTlak~La~~lg~~~i--~~d~l~~~~l~~g~ 117 (289)
.|.=|++.||||+|||-+|++.|.+.+..+| ...+++++|+-.|.
T Consensus 184 PPKGVLLYGPPGTGKTLLAkAVA~~T~AtFIrvvgSElVqKYiGEGa 230 (406)
T COG1222 184 PPKGVLLYGPPGTGKTLLAKAVANQTDATFIRVVGSELVQKYIGEGA 230 (406)
T ss_pred CCCceEeeCCCCCcHHHHHHHHHhccCceEEEeccHHHHHHHhccch
Confidence 4555899999999999999999999987775 45788877765554
No 303
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=96.73 E-value=0.018 Score=52.86 Aligned_cols=30 Identities=30% Similarity=0.370 Sum_probs=24.7
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHHHhCCCee
Q 022951 74 HVQWVFLGCPGVGKGTYASRLSNLLGVPHI 103 (289)
Q Consensus 74 ~~~Ivl~GppGsGKSTlak~La~~lg~~~i 103 (289)
+..++|.||||+||||+++.+++.++..++
T Consensus 43 ~~~lll~G~~G~GKT~la~~l~~~~~~~~~ 72 (316)
T PHA02544 43 PNMLLHSPSPGTGKTTVAKALCNEVGAEVL 72 (316)
T ss_pred CeEEEeeCcCCCCHHHHHHHHHHHhCccce
Confidence 456777999999999999999998865443
No 304
>TIGR03708 poly_P_AMP_trns polyphosphate:AMP phosphotransferase. Members of this protein family contain a domain duplication. The characterized member from Acinetobacter johnsonii is polyphosphate:AMP phosphotransferase (PAP), which can transfer the terminal phosphate from poly(P) to AMP, yielding ADP. In the opposite direction, this enzyme can synthesize poly(P). Each domain of this protein family is homologous to polyphosphate kinase, an enzyme that can run in the forward direction to extend a polyphosphate chain with a new terminal phosphate from ATP, or in reverse to make ATP (or GTP) from ADP (or GDP).
Probab=96.72 E-value=0.044 Score=53.69 Aligned_cols=151 Identities=16% Similarity=0.145 Sum_probs=87.4
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHHHHhCCCeeehHHHHHHHHHcCCccCHHHHHHHHHHHHHcccccCCceEEEcC--c
Q 022951 71 EGKHVQWVFLGCPGVGKGTYASRLSNLLGVPHIATGDLLDEIVSQGKLVSDEIIINLLSKRLEAGEAKGEAGFILDG--F 148 (289)
Q Consensus 71 ~~~~~~Ivl~GppGsGKSTlak~La~~lg~~~i~~d~l~~~~l~~g~~v~~~~~~~ll~~~l~~~~~~~~~g~Ildg--~ 148 (289)
...+.+|+|.|..+|||.-..++|.+.++=.++.+-.+ +.+...+.....+-......... |...|+|+ |
T Consensus 296 ~~~~vlivfeG~DaAGKgg~I~rl~~~ldPrg~~v~~~-------~~Pt~~E~~~~~lwRf~~~lP~~-G~i~iFdRSwY 367 (493)
T TIGR03708 296 RKRSLVLVFEGWDAAGKGGAIRRVTEALDARQYRVVPI-------AAPTDEEKAQHYLWRFWRHIPRR-GRITIFDRSWY 367 (493)
T ss_pred CCCCEEEEEEcccCCCCcHHHHHHHhhcCCCeeEEEeC-------CCcCHHHHcCcHHHHHHHhCCCC-CeEEEEcCCcc
Confidence 45689999999999999999999999886544443111 33333332222232222222222 44556654 2
Q ss_pred ccH-----------HHH----------hh----cCCCcEEEEEecCHHHHHHHHhcccccccCCCccccccccccCCCCC
Q 022951 149 PRT-----------EIL----------EG----VTDIDLVINLKLREEALLAKCLGRRICSECGGNYNVACIDIKGENGN 203 (289)
Q Consensus 149 p~~-----------~~l----------~~----~~~~d~vI~Ld~~~e~l~~Rl~~R~~~~~~g~~y~~~~~~~~~~~~~ 203 (289)
.+. +.+ ++ -+-.-+-+||.++.++..+|+..|..++.. .+.+
T Consensus 368 ~~vlverv~g~~~~~~~~~~~~~I~~FE~~L~~~G~~ivKf~LhIsk~EQ~~R~~~r~~~p~k--~WK~----------- 434 (493)
T TIGR03708 368 GRVLVERVEGFCSEAEWLRAYGEINDFEEQLTEHGAIVVKFWLHIDKEEQLRRFEERENTPFK--RYKI----------- 434 (493)
T ss_pred CCcceeeecCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEcCHHHHHHHHHHHhcCCcc--CCcC-----------
Confidence 221 111 11 112446799999999999999999765421 1111
Q ss_pred CCCCCCCCCCCCccccCccccCCCcHHHHHHHHHHHHHhchHHHHHHHH-cCcEEEEeCCCC
Q 022951 204 PGMYMGPLLPPPHCASKLITRSDDKEEVVRERLRIYNEKSRPVEEFYRR-RGKLLEFDLPGG 264 (289)
Q Consensus 204 ~~~~~~~~~~~~~~~~~L~~r~~d~~~~~~~rl~~y~~~~~~l~~~y~~-~~~l~~id~~~~ 264 (289)
++..-.-+++.+.|...++.++..-.. ...|+.|+++..
T Consensus 435 ----------------------t~~D~~~r~~w~~Y~~a~~~ml~~T~t~~APW~vI~a~dK 474 (493)
T TIGR03708 435 ----------------------TDEDWRNREKWDAYEDAVNDMIDRTSTIIAPWTLVEANDK 474 (493)
T ss_pred ----------------------CHHHHHHHHhHHHHHHHHHHHHHhcCCCCCCeEEEeCCCh
Confidence 111223345667777776666554322 357999998854
No 305
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.72 E-value=0.013 Score=59.11 Aligned_cols=27 Identities=30% Similarity=0.406 Sum_probs=24.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhCCC
Q 022951 75 VQWVFLGCPGVGKGTYASRLSNLLGVP 101 (289)
Q Consensus 75 ~~Ivl~GppGsGKSTlak~La~~lg~~ 101 (289)
+-++|.||+|+||||+|+.||+.+++.
T Consensus 39 ~a~Lf~Gp~G~GKttlA~~lAk~L~c~ 65 (620)
T PRK14948 39 PAYLFTGPRGTGKTSSARILAKSLNCL 65 (620)
T ss_pred ceEEEECCCCCChHHHHHHHHHHhcCC
Confidence 457999999999999999999999764
No 306
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=96.72 E-value=0.0015 Score=50.79 Aligned_cols=34 Identities=24% Similarity=0.266 Sum_probs=25.0
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHHHhCCCeeehHHHH
Q 022951 74 HVQWVFLGCPGVGKGTYASRLSNLLGVPHIATGDLL 109 (289)
Q Consensus 74 ~~~Ivl~GppGsGKSTlak~La~~lg~~~i~~d~l~ 109 (289)
...++|.||+||||||+++.|. -|-..+..+++.
T Consensus 15 ge~v~I~GpSGsGKSTLl~~l~--~G~i~~~g~di~ 48 (107)
T cd00820 15 KVGVLITGDSGIGKTELALELI--KRKHRLVGDDNV 48 (107)
T ss_pred CEEEEEEcCCCCCHHHHHHHhh--CCeEEEeeEeHH
Confidence 4678999999999999999987 233444444443
No 307
>PRK08181 transposase; Validated
Probab=96.71 E-value=0.006 Score=55.27 Aligned_cols=40 Identities=33% Similarity=0.510 Sum_probs=31.8
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHHh---C--CCeeehHHHHHHH
Q 022951 73 KHVQWVFLGCPGVGKGTYASRLSNLL---G--VPHIATGDLLDEI 112 (289)
Q Consensus 73 ~~~~Ivl~GppGsGKSTlak~La~~l---g--~~~i~~d~l~~~~ 112 (289)
....++|+||||+|||.++..|+... | +.+++..+++..+
T Consensus 105 ~~~nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~~~~L~~~l 149 (269)
T PRK08181 105 KGANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTRTTDLVQKL 149 (269)
T ss_pred cCceEEEEecCCCcHHHHHHHHHHHHHHcCCceeeeeHHHHHHHH
Confidence 34569999999999999999998644 3 6678888887554
No 308
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=96.71 E-value=0.012 Score=60.02 Aligned_cols=29 Identities=31% Similarity=0.498 Sum_probs=25.5
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHHHhCCCe
Q 022951 74 HVQWVFLGCPGVGKGTYASRLSNLLGVPH 102 (289)
Q Consensus 74 ~~~Ivl~GppGsGKSTlak~La~~lg~~~ 102 (289)
++.++|+||+|+||||+|+.||+.+.+.+
T Consensus 40 ~HAYLF~GP~GtGKTt~AriLAk~LnC~~ 68 (725)
T PRK07133 40 SHAYLFSGPRGTGKTSVAKIFANALNCSH 68 (725)
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHhcccc
Confidence 46688999999999999999999987654
No 309
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=96.71 E-value=0.0065 Score=60.74 Aligned_cols=27 Identities=22% Similarity=0.463 Sum_probs=24.1
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHHHhCC
Q 022951 74 HVQWVFLGCPGVGKGTYASRLSNLLGV 100 (289)
Q Consensus 74 ~~~Ivl~GppGsGKSTlak~La~~lg~ 100 (289)
++-++|.||+|+||||+|+.+|+.+.+
T Consensus 38 ~hA~Lf~GP~GvGKTTlA~~lAk~L~C 64 (605)
T PRK05896 38 THAYIFSGPRGIGKTSIAKIFAKAINC 64 (605)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhcC
Confidence 356899999999999999999999865
No 310
>KOG1533 consensus Predicted GTPase [General function prediction only]
Probab=96.70 E-value=0.0051 Score=54.22 Aligned_cols=22 Identities=45% Similarity=0.801 Sum_probs=17.9
Q ss_pred EEEEcCCCCCHHHHHHHHHHHh
Q 022951 77 WVFLGCPGVGKGTYASRLSNLL 98 (289)
Q Consensus 77 Ivl~GppGsGKSTlak~La~~l 98 (289)
-+|+|||||||||.|.-..+-+
T Consensus 5 qvVIGPPgSGKsTYc~g~~~fl 26 (290)
T KOG1533|consen 5 QVVIGPPGSGKSTYCNGMSQFL 26 (290)
T ss_pred eEEEcCCCCCccchhhhHHHHH
Confidence 4789999999999986665544
No 311
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=96.69 E-value=0.0058 Score=59.67 Aligned_cols=32 Identities=28% Similarity=0.412 Sum_probs=28.7
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhCCCeee
Q 022951 73 KHVQWVFLGCPGVGKGTYASRLSNLLGVPHIA 104 (289)
Q Consensus 73 ~~~~Ivl~GppGsGKSTlak~La~~lg~~~i~ 104 (289)
-|.=|+|+||||.|||-+|+.+|.+-|+++|.
T Consensus 336 LPKGVLLvGPPGTGKTlLARAvAGEA~VPFF~ 367 (752)
T KOG0734|consen 336 LPKGVLLVGPPGTGKTLLARAVAGEAGVPFFY 367 (752)
T ss_pred CCCceEEeCCCCCchhHHHHHhhcccCCCeEe
Confidence 35668999999999999999999999988875
No 312
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.69 E-value=0.016 Score=54.62 Aligned_cols=30 Identities=23% Similarity=0.390 Sum_probs=26.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCeeeh
Q 022951 76 QWVFLGCPGVGKGTYASRLSNLLGVPHIAT 105 (289)
Q Consensus 76 ~Ivl~GppGsGKSTlak~La~~lg~~~i~~ 105 (289)
=+++.||||+|||-+||++|.+-|..+|++
T Consensus 247 gvLm~GPPGTGKTlLAKAvATEc~tTFFNV 276 (491)
T KOG0738|consen 247 GVLMVGPPGTGKTLLAKAVATECGTTFFNV 276 (491)
T ss_pred eeeeeCCCCCcHHHHHHHHHHhhcCeEEEe
Confidence 478999999999999999999999777764
No 313
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=96.67 E-value=0.0044 Score=62.37 Aligned_cols=32 Identities=25% Similarity=0.395 Sum_probs=28.8
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHHHhCCCeeeh
Q 022951 74 HVQWVFLGCPGVGKGTYASRLSNLLGVPHIAT 105 (289)
Q Consensus 74 ~~~Ivl~GppGsGKSTlak~La~~lg~~~i~~ 105 (289)
..+.+|+||||.||||+|.-+|++-|+..+.+
T Consensus 326 kKilLL~GppGlGKTTLAHViAkqaGYsVvEI 357 (877)
T KOG1969|consen 326 KKILLLCGPPGLGKTTLAHVIAKQAGYSVVEI 357 (877)
T ss_pred cceEEeecCCCCChhHHHHHHHHhcCceEEEe
Confidence 35678999999999999999999999998875
No 314
>COG3911 Predicted ATPase [General function prediction only]
Probab=96.67 E-value=0.0021 Score=52.80 Aligned_cols=29 Identities=31% Similarity=0.646 Sum_probs=23.7
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhCCCe
Q 022951 73 KHVQWVFLGCPGVGKGTYASRLSNLLGVPH 102 (289)
Q Consensus 73 ~~~~Ivl~GppGsGKSTlak~La~~lg~~~ 102 (289)
++.+++|+|.||+||||+...|+.. |+..
T Consensus 8 R~~~fIltGgpGaGKTtLL~aLa~~-Gfat 36 (183)
T COG3911 8 RHKRFILTGGPGAGKTTLLAALARA-GFAT 36 (183)
T ss_pred cceEEEEeCCCCCcHHHHHHHHHHc-Ccee
Confidence 3467889999999999999999876 5433
No 315
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=96.67 E-value=0.0012 Score=58.75 Aligned_cols=21 Identities=38% Similarity=0.601 Sum_probs=18.7
Q ss_pred EEcCCCCCHHHHHHHHHHHhC
Q 022951 79 FLGCPGVGKGTYASRLSNLLG 99 (289)
Q Consensus 79 l~GppGsGKSTlak~La~~lg 99 (289)
|+||+||||||+++.+.+.+.
T Consensus 1 ViGpaGSGKTT~~~~~~~~~~ 21 (238)
T PF03029_consen 1 VIGPAGSGKTTFCKGLSEWLE 21 (238)
T ss_dssp -EESTTSSHHHHHHHHHHHHT
T ss_pred CCCCCCCCHHHHHHHHHHHHH
Confidence 689999999999999999874
No 316
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=96.67 E-value=0.0014 Score=61.14 Aligned_cols=25 Identities=32% Similarity=0.399 Sum_probs=21.6
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHH
Q 022951 73 KHVQWVFLGCPGVGKGTYASRLSNL 97 (289)
Q Consensus 73 ~~~~Ivl~GppGsGKSTlak~La~~ 97 (289)
..-+++|.||+||||||+.+.||--
T Consensus 28 ~Gef~vllGPSGcGKSTlLr~IAGL 52 (338)
T COG3839 28 DGEFVVLLGPSGCGKSTLLRMIAGL 52 (338)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3457899999999999999999853
No 317
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=96.66 E-value=0.002 Score=57.64 Aligned_cols=26 Identities=31% Similarity=0.339 Sum_probs=22.2
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHHh
Q 022951 73 KHVQWVFLGCPGVGKGTYASRLSNLL 98 (289)
Q Consensus 73 ~~~~Ivl~GppGsGKSTlak~La~~l 98 (289)
+.++|-|+||||+||||+...|...|
T Consensus 28 ~a~~iGiTG~PGaGKSTli~~l~~~~ 53 (266)
T PF03308_consen 28 RAHVIGITGPPGAGKSTLIDALIREL 53 (266)
T ss_dssp -SEEEEEEE-TTSSHHHHHHHHHHHH
T ss_pred CceEEEeeCCCCCcHHHHHHHHHHHH
Confidence 45789999999999999999999887
No 318
>PRK06893 DNA replication initiation factor; Validated
Probab=96.66 E-value=0.0023 Score=56.43 Aligned_cols=32 Identities=19% Similarity=0.143 Sum_probs=26.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHh-----CCCeeehH
Q 022951 75 VQWVFLGCPGVGKGTYASRLSNLL-----GVPHIATG 106 (289)
Q Consensus 75 ~~Ivl~GppGsGKSTlak~La~~l-----g~~~i~~d 106 (289)
..++|.||||+|||+++..++..+ +..|++..
T Consensus 40 ~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~~~ 76 (229)
T PRK06893 40 PFFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIPLS 76 (229)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEeeHH
Confidence 467899999999999999999875 56677664
No 319
>CHL00176 ftsH cell division protein; Validated
Probab=96.66 E-value=0.0019 Score=65.20 Aligned_cols=32 Identities=25% Similarity=0.398 Sum_probs=28.4
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHHHhCCCeeeh
Q 022951 74 HVQWVFLGCPGVGKGTYASRLSNLLGVPHIAT 105 (289)
Q Consensus 74 ~~~Ivl~GppGsGKSTlak~La~~lg~~~i~~ 105 (289)
+.-++|.||||+|||++|+.||...+.+++..
T Consensus 216 p~gVLL~GPpGTGKT~LAralA~e~~~p~i~i 247 (638)
T CHL00176 216 PKGVLLVGPPGTGKTLLAKAIAGEAEVPFFSI 247 (638)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhCCCeeec
Confidence 45689999999999999999999998887754
No 320
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=96.66 E-value=0.0019 Score=59.31 Aligned_cols=33 Identities=27% Similarity=0.469 Sum_probs=29.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhCCCeeehHH
Q 022951 75 VQWVFLGCPGVGKGTYASRLSNLLGVPHIATGD 107 (289)
Q Consensus 75 ~~Ivl~GppGsGKSTlak~La~~lg~~~i~~d~ 107 (289)
-.|+++||.|||||-+|+.||+.+++|+--.|.
T Consensus 98 SNILLiGPTGsGKTlLAqTLAk~LnVPFaiADA 130 (408)
T COG1219 98 SNILLIGPTGSGKTLLAQTLAKILNVPFAIADA 130 (408)
T ss_pred ccEEEECCCCCcHHHHHHHHHHHhCCCeeeccc
Confidence 479999999999999999999999999865443
No 321
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=96.65 E-value=0.02 Score=57.50 Aligned_cols=29 Identities=31% Similarity=0.390 Sum_probs=25.7
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHHHhCCCe
Q 022951 74 HVQWVFLGCPGVGKGTYASRLSNLLGVPH 102 (289)
Q Consensus 74 ~~~Ivl~GppGsGKSTlak~La~~lg~~~ 102 (289)
+.-++|+||+|+||||+|+.||+.+++..
T Consensus 46 ~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~ 74 (598)
T PRK09111 46 AQAFMLTGVRGVGKTTTARILARALNYEG 74 (598)
T ss_pred CceEEEECCCCCCHHHHHHHHHHhhCcCC
Confidence 45689999999999999999999997654
No 322
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=96.65 E-value=0.0019 Score=54.12 Aligned_cols=23 Identities=39% Similarity=0.563 Sum_probs=20.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHh
Q 022951 76 QWVFLGCPGVGKGTYASRLSNLL 98 (289)
Q Consensus 76 ~Ivl~GppGsGKSTlak~La~~l 98 (289)
+++++|+||+||||++..|+..+
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~~ 24 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYL 24 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 57899999999999999998875
No 323
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=96.65 E-value=0.002 Score=55.73 Aligned_cols=25 Identities=24% Similarity=0.268 Sum_probs=22.6
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHHHh
Q 022951 74 HVQWVFLGCPGVGKGTYASRLSNLL 98 (289)
Q Consensus 74 ~~~Ivl~GppGsGKSTlak~La~~l 98 (289)
|++|.|+|++||||||+.+.|...+
T Consensus 1 ~~~i~i~G~~GsGKTTll~~l~~~l 25 (199)
T TIGR00101 1 PLKIGVAGPVGSGKTALIEALTRAL 25 (199)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhh
Confidence 4689999999999999999998875
No 324
>PRK08084 DNA replication initiation factor; Provisional
Probab=96.65 E-value=0.0021 Score=56.98 Aligned_cols=33 Identities=12% Similarity=0.080 Sum_probs=27.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhC-----CCeeehHH
Q 022951 75 VQWVFLGCPGVGKGTYASRLSNLLG-----VPHIATGD 107 (289)
Q Consensus 75 ~~Ivl~GppGsGKSTlak~La~~lg-----~~~i~~d~ 107 (289)
..++|+||+|||||+++..++.... +.|++.++
T Consensus 46 ~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~v~y~~~~~ 83 (235)
T PRK08084 46 GYIYLWSREGAGRSHLLHAACAELSQRGRAVGYVPLDK 83 (235)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEHHH
Confidence 4689999999999999999988654 46677655
No 325
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=96.65 E-value=0.0016 Score=52.89 Aligned_cols=23 Identities=30% Similarity=0.358 Sum_probs=20.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHh
Q 022951 76 QWVFLGCPGVGKGTYASRLSNLL 98 (289)
Q Consensus 76 ~Ivl~GppGsGKSTlak~La~~l 98 (289)
+++|+|+||+||||++..++...
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~ 23 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNI 23 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHH
Confidence 36899999999999999998876
No 326
>PRK08116 hypothetical protein; Validated
Probab=96.65 E-value=0.014 Score=52.80 Aligned_cols=38 Identities=32% Similarity=0.413 Sum_probs=30.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHh-----CCCeeehHHHHHHH
Q 022951 75 VQWVFLGCPGVGKGTYASRLSNLL-----GVPHIATGDLLDEI 112 (289)
Q Consensus 75 ~~Ivl~GppGsGKSTlak~La~~l-----g~~~i~~d~l~~~~ 112 (289)
.-++|.|++|+|||.++..++..+ .+.+++..+++..+
T Consensus 115 ~gl~l~G~~GtGKThLa~aia~~l~~~~~~v~~~~~~~ll~~i 157 (268)
T PRK08116 115 VGLLLWGSVGTGKTYLAACIANELIEKGVPVIFVNFPQLLNRI 157 (268)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHH
Confidence 348899999999999999999875 34567777777544
No 327
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=96.64 E-value=0.0018 Score=58.59 Aligned_cols=27 Identities=41% Similarity=0.630 Sum_probs=24.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCe
Q 022951 76 QWVFLGCPGVGKGTYASRLSNLLGVPH 102 (289)
Q Consensus 76 ~Ivl~GppGsGKSTlak~La~~lg~~~ 102 (289)
-++|.||||-||||+|..+|.++|..+
T Consensus 54 HvLl~GPPGlGKTTLA~IIA~Emgvn~ 80 (332)
T COG2255 54 HVLLFGPPGLGKTTLAHIIANELGVNL 80 (332)
T ss_pred eEEeeCCCCCcHHHHHHHHHHHhcCCe
Confidence 478999999999999999999998644
No 328
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=96.64 E-value=0.0021 Score=59.94 Aligned_cols=27 Identities=37% Similarity=0.613 Sum_probs=24.0
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHHHh
Q 022951 72 GKHVQWVFLGCPGVGKGTYASRLSNLL 98 (289)
Q Consensus 72 ~~~~~Ivl~GppGsGKSTlak~La~~l 98 (289)
+++.+|.|+|+|||||||++..|...+
T Consensus 54 ~~~~~igi~G~~GaGKSTl~~~l~~~l 80 (332)
T PRK09435 54 GNALRIGITGVPGVGKSTFIEALGMHL 80 (332)
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHH
Confidence 467899999999999999999988776
No 329
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=96.64 E-value=0.0017 Score=54.32 Aligned_cols=26 Identities=23% Similarity=0.299 Sum_probs=18.2
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHHh
Q 022951 73 KHVQWVFLGCPGVGKGTYASRLSNLL 98 (289)
Q Consensus 73 ~~~~Ivl~GppGsGKSTlak~La~~l 98 (289)
.+..++|.|++|+|||++.+.+.+.+
T Consensus 23 ~~~~~ll~G~~G~GKT~ll~~~~~~~ 48 (185)
T PF13191_consen 23 SPRNLLLTGESGSGKTSLLRALLDRL 48 (185)
T ss_dssp ----EEE-B-TTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 45778999999999999999887766
No 330
>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=96.63 E-value=0.0017 Score=63.34 Aligned_cols=31 Identities=32% Similarity=0.354 Sum_probs=27.3
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHHHhCCCeee
Q 022951 74 HVQWVFLGCPGVGKGTYASRLSNLLGVPHIA 104 (289)
Q Consensus 74 ~~~Ivl~GppGsGKSTlak~La~~lg~~~i~ 104 (289)
..+.+|+||+||||||..+.|++.+|+.++.
T Consensus 110 ~~iLLltGPsGcGKSTtvkvLskelg~~~~E 140 (634)
T KOG1970|consen 110 SRILLLTGPSGCGKSTTVKVLSKELGYQLIE 140 (634)
T ss_pred ceEEEEeCCCCCCchhHHHHHHHhhCceeee
Confidence 4577899999999999999999999987764
No 331
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=96.63 E-value=0.0023 Score=58.12 Aligned_cols=27 Identities=41% Similarity=0.573 Sum_probs=23.4
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHHHh
Q 022951 72 GKHVQWVFLGCPGVGKGTYASRLSNLL 98 (289)
Q Consensus 72 ~~~~~Ivl~GppGsGKSTlak~La~~l 98 (289)
.++.+|+|+|++|+||||++..||..+
T Consensus 70 ~~~~vi~l~G~~G~GKTTt~akLA~~l 96 (272)
T TIGR00064 70 NKPNVILFVGVNGVGKTTTIAKLANKL 96 (272)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHH
Confidence 346788899999999999999998876
No 332
>COG4240 Predicted kinase [General function prediction only]
Probab=96.62 E-value=0.0026 Score=55.92 Aligned_cols=38 Identities=29% Similarity=0.447 Sum_probs=30.7
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHHHh---C---CCeeehHHHH
Q 022951 72 GKHVQWVFLGCPGVGKGTYASRLSNLL---G---VPHIATGDLL 109 (289)
Q Consensus 72 ~~~~~Ivl~GppGsGKSTlak~La~~l---g---~~~i~~d~l~ 109 (289)
++|+++.|+||-||||||++..|...+ | ...+|.||++
T Consensus 48 grPli~gisGpQGSGKStls~~i~~~L~~kg~ert~~lSLDDlY 91 (300)
T COG4240 48 GRPLIVGISGPQGSGKSTLSALIVRLLAAKGLERTATLSLDDLY 91 (300)
T ss_pred CCceEEEeecCCCCchhhHHHHHHHHHHHhcccceEEeehhhhh
Confidence 468899999999999999997765544 2 4567889988
No 333
>PRK06835 DNA replication protein DnaC; Validated
Probab=96.61 E-value=0.013 Score=54.71 Aligned_cols=38 Identities=21% Similarity=0.359 Sum_probs=31.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHh-----CCCeeehHHHHHHH
Q 022951 75 VQWVFLGCPGVGKGTYASRLSNLL-----GVPHIATGDLLDEI 112 (289)
Q Consensus 75 ~~Ivl~GppGsGKSTlak~La~~l-----g~~~i~~d~l~~~~ 112 (289)
..++|.|++|+|||.++..++..+ .+.+++..+++..+
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t~~~l~~~l 226 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRTADELIEIL 226 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEEHHHHHHHH
Confidence 568999999999999999999876 46678888887544
No 334
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.59 E-value=0.017 Score=58.15 Aligned_cols=28 Identities=32% Similarity=0.478 Sum_probs=24.9
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHHHhCCC
Q 022951 74 HVQWVFLGCPGVGKGTYASRLSNLLGVP 101 (289)
Q Consensus 74 ~~~Ivl~GppGsGKSTlak~La~~lg~~ 101 (289)
.+.++|.||+|+||||+|+.||+.+++.
T Consensus 38 ~ha~Lf~GPpG~GKTtiArilAk~L~C~ 65 (624)
T PRK14959 38 APAYLFSGTRGVGKTTIARIFAKALNCE 65 (624)
T ss_pred CceEEEECCCCCCHHHHHHHHHHhcccc
Confidence 4568999999999999999999999763
No 335
>cd01918 HprK_C HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of Ser-46 of HPr and its dephosphorylation by phosphorolysis. The latter reaction uses inorganic phosphate as substrate and produces pyrophosphate. Phosphoenolpyruvate carboxykinase (PEPCK) and the C-terminal catalytic domain of HprK/P are structurally similar with conserved active site residues suggesting these two phosphotransferases have related functions. The HprK/P N-terminal domain is structurally similar to the N-terminal domains of the MurE and MurF amino acid ligases.
Probab=96.58 E-value=0.0022 Score=52.91 Aligned_cols=32 Identities=25% Similarity=0.337 Sum_probs=25.9
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHHHhCCCeeehH
Q 022951 74 HVQWVFLGCPGVGKGTYASRLSNLLGVPHIATG 106 (289)
Q Consensus 74 ~~~Ivl~GppGsGKSTlak~La~~lg~~~i~~d 106 (289)
.+-++|+|++|+||||+|..|.++ |+.+++-|
T Consensus 14 g~gvLi~G~sG~GKStlal~L~~~-g~~lvaDD 45 (149)
T cd01918 14 GIGVLITGPSGIGKSELALELIKR-GHRLVADD 45 (149)
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHc-CCeEEECC
Confidence 356899999999999999998875 66666543
No 336
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=96.57 E-value=0.0018 Score=64.09 Aligned_cols=26 Identities=38% Similarity=0.519 Sum_probs=23.7
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHHh
Q 022951 73 KHVQWVFLGCPGVGKGTYASRLSNLL 98 (289)
Q Consensus 73 ~~~~Ivl~GppGsGKSTlak~La~~l 98 (289)
+..+++|.||||+||||+++.|++.+
T Consensus 102 ~~~IL~LvGPpG~GKSsLa~~la~~l 127 (644)
T PRK15455 102 KKQILYLLGPVGGGKSSLAERLKSLM 127 (644)
T ss_pred CCceEEEecCCCCCchHHHHHHHHHH
Confidence 55799999999999999999999876
No 337
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=96.57 E-value=0.0024 Score=52.09 Aligned_cols=24 Identities=29% Similarity=0.236 Sum_probs=21.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHh
Q 022951 75 VQWVFLGCPGVGKGTYASRLSNLL 98 (289)
Q Consensus 75 ~~Ivl~GppGsGKSTlak~La~~l 98 (289)
++|.|+|+.+|||||+++.|...+
T Consensus 1 pvv~VvG~~~sGKTTl~~~Li~~l 24 (140)
T PF03205_consen 1 PVVQVVGPKNSGKTTLIRKLINEL 24 (140)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHH
Confidence 368899999999999999998876
No 338
>PTZ00202 tuzin; Provisional
Probab=96.55 E-value=0.012 Score=56.83 Aligned_cols=43 Identities=28% Similarity=0.409 Sum_probs=31.9
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhCCCee-----ehHHHHHHHHHc
Q 022951 73 KHVQWVFLGCPGVGKGTYASRLSNLLGVPHI-----ATGDLLDEIVSQ 115 (289)
Q Consensus 73 ~~~~Ivl~GppGsGKSTlak~La~~lg~~~i-----~~d~l~~~~l~~ 115 (289)
.+.+++|+|++||||||+++.+...++.+.+ ..++++..++..
T Consensus 285 ~privvLtG~~G~GKTTLlR~~~~~l~~~qL~vNprg~eElLr~LL~A 332 (550)
T PTZ00202 285 HPRIVVFTGFRGCGKSSLCRSAVRKEGMPAVFVDVRGTEDTLRSVVKA 332 (550)
T ss_pred CceEEEEECCCCCCHHHHHHHHHhcCCceEEEECCCCHHHHHHHHHHH
Confidence 3458999999999999999999988875433 345666555443
No 339
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=96.55 E-value=0.002 Score=57.77 Aligned_cols=37 Identities=32% Similarity=0.488 Sum_probs=31.7
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhCCCeeeh--HHHH
Q 022951 73 KHVQWVFLGCPGVGKGTYASRLSNLLGVPHIAT--GDLL 109 (289)
Q Consensus 73 ~~~~Ivl~GppGsGKSTlak~La~~lg~~~i~~--d~l~ 109 (289)
.|..|+|.||||.|||.+|+.||.+.+.+++.+ .+++
T Consensus 150 APknVLFyGppGTGKTm~Akalane~kvp~l~vkat~li 188 (368)
T COG1223 150 APKNVLFYGPPGTGKTMMAKALANEAKVPLLLVKATELI 188 (368)
T ss_pred CcceeEEECCCCccHHHHHHHHhcccCCceEEechHHHH
Confidence 467899999999999999999999999887764 4555
No 340
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=96.53 E-value=0.0027 Score=58.92 Aligned_cols=26 Identities=31% Similarity=0.438 Sum_probs=23.6
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHHh
Q 022951 73 KHVQWVFLGCPGVGKGTYASRLSNLL 98 (289)
Q Consensus 73 ~~~~Ivl~GppGsGKSTlak~La~~l 98 (289)
++.+|+|+||+|+||||++..||..+
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA~~l 138 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLAHKY 138 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHH
Confidence 46789999999999999999999876
No 341
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=96.52 E-value=0.0027 Score=65.76 Aligned_cols=32 Identities=25% Similarity=0.424 Sum_probs=27.5
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhCCCeee
Q 022951 73 KHVQWVFLGCPGVGKGTYASRLSNLLGVPHIA 104 (289)
Q Consensus 73 ~~~~Ivl~GppGsGKSTlak~La~~lg~~~i~ 104 (289)
+...++|.||||+|||++|+.||+.++..++.
T Consensus 346 ~~~~lll~GppG~GKT~lAk~iA~~l~~~~~~ 377 (775)
T TIGR00763 346 KGPILCLVGPPGVGKTSLGKSIAKALNRKFVR 377 (775)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHhcCCeEE
Confidence 34578999999999999999999999876653
No 342
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=96.52 E-value=0.0019 Score=60.44 Aligned_cols=23 Identities=26% Similarity=0.297 Sum_probs=20.7
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHH
Q 022951 74 HVQWVFLGCPGVGKGTYASRLSN 96 (289)
Q Consensus 74 ~~~Ivl~GppGsGKSTlak~La~ 96 (289)
.-++.|.||+||||||+.+.||.
T Consensus 31 Gef~~lLGPSGcGKTTlLR~IAG 53 (352)
T COG3842 31 GEFVTLLGPSGCGKTTLLRMIAG 53 (352)
T ss_pred CcEEEEECCCCCCHHHHHHHHhC
Confidence 35788999999999999999985
No 343
>PRK06526 transposase; Provisional
Probab=96.52 E-value=0.0032 Score=56.60 Aligned_cols=41 Identities=27% Similarity=0.316 Sum_probs=30.5
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHHHh-----CCCeeehHHHHHHH
Q 022951 72 GKHVQWVFLGCPGVGKGTYASRLSNLL-----GVPHIATGDLLDEI 112 (289)
Q Consensus 72 ~~~~~Ivl~GppGsGKSTlak~La~~l-----g~~~i~~d~l~~~~ 112 (289)
.....++|+||||+|||+++..|+... .+.+++..+++..+
T Consensus 96 ~~~~nlll~Gp~GtGKThLa~al~~~a~~~g~~v~f~t~~~l~~~l 141 (254)
T PRK06526 96 TGKENVVFLGPPGTGKTHLAIGLGIRACQAGHRVLFATAAQWVARL 141 (254)
T ss_pred hcCceEEEEeCCCCchHHHHHHHHHHHHHCCCchhhhhHHHHHHHH
Confidence 455679999999999999999998764 24455666666443
No 344
>PRK14974 cell division protein FtsY; Provisional
Probab=96.50 E-value=0.0028 Score=59.20 Aligned_cols=26 Identities=42% Similarity=0.599 Sum_probs=22.9
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHHh
Q 022951 73 KHVQWVFLGCPGVGKGTYASRLSNLL 98 (289)
Q Consensus 73 ~~~~Ivl~GppGsGKSTlak~La~~l 98 (289)
++.+|+|+|++|+||||++..|+..+
T Consensus 139 ~~~vi~~~G~~GvGKTTtiakLA~~l 164 (336)
T PRK14974 139 KPVVIVFVGVNGTGKTTTIAKLAYYL 164 (336)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHH
Confidence 56889999999999999888888765
No 345
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=96.49 E-value=0.024 Score=51.81 Aligned_cols=23 Identities=43% Similarity=0.596 Sum_probs=21.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHh
Q 022951 76 QWVFLGCPGVGKGTYASRLSNLL 98 (289)
Q Consensus 76 ~Ivl~GppGsGKSTlak~La~~l 98 (289)
.++|+|+||+||||+++.+++.+
T Consensus 40 ~~ll~G~~G~GKt~~~~~l~~~l 62 (319)
T PRK00440 40 HLLFAGPPGTGKTTAALALAREL 62 (319)
T ss_pred eEEEECCCCCCHHHHHHHHHHHH
Confidence 46999999999999999999986
No 346
>PLN03025 replication factor C subunit; Provisional
Probab=96.48 E-value=0.0028 Score=58.70 Aligned_cols=23 Identities=35% Similarity=0.494 Sum_probs=21.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHh
Q 022951 76 QWVFLGCPGVGKGTYASRLSNLL 98 (289)
Q Consensus 76 ~Ivl~GppGsGKSTlak~La~~l 98 (289)
.++|.||||+||||+++.+++.+
T Consensus 36 ~lll~Gp~G~GKTtla~~la~~l 58 (319)
T PLN03025 36 NLILSGPPGTGKTTSILALAHEL 58 (319)
T ss_pred eEEEECCCCCCHHHHHHHHHHHH
Confidence 47899999999999999999987
No 347
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=96.47 E-value=0.011 Score=58.95 Aligned_cols=29 Identities=21% Similarity=0.340 Sum_probs=25.4
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHHHhCCCe
Q 022951 74 HVQWVFLGCPGVGKGTYASRLSNLLGVPH 102 (289)
Q Consensus 74 ~~~Ivl~GppGsGKSTlak~La~~lg~~~ 102 (289)
++.++|+||+|+||||+|+.||+.+++..
T Consensus 38 ~hayLf~Gp~GtGKTt~Ak~lAkal~c~~ 66 (559)
T PRK05563 38 SHAYLFSGPRGTGKTSAAKIFAKAVNCLN 66 (559)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhcCCC
Confidence 46688999999999999999999987644
No 348
>COG2087 CobU Adenosyl cobinamide kinase/adenosyl cobinamide phosphate guanylyltransferase [Coenzyme metabolism]
Probab=96.45 E-value=0.016 Score=48.50 Aligned_cols=82 Identities=21% Similarity=0.248 Sum_probs=48.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhC--CCeeehHHHHHHHHHcCCccCHHHHHHHHHHHHHcccccCCceEEEcCcccH-
Q 022951 75 VQWVFLGCPGVGKGTYASRLSNLLG--VPHIATGDLLDEIVSQGKLVSDEIIINLLSKRLEAGEAKGEAGFILDGFPRT- 151 (289)
Q Consensus 75 ~~Ivl~GppGsGKSTlak~La~~lg--~~~i~~d~l~~~~l~~g~~v~~~~~~~ll~~~l~~~~~~~~~g~Ildg~p~~- 151 (289)
|.|+|+|+.-||||+.|..|+.+.+ +.||.+ +....++.-.++-.++-.+ ...|..--.|..
T Consensus 1 ~~ilvtGgaRSGKS~~AE~la~~~~~~v~YvAT----------~~a~D~Em~~RI~~Hr~rR-----p~~W~tvE~~~~l 65 (175)
T COG2087 1 MMILVTGGARSGKSSFAEALAGESGGQVLYVAT----------GRAFDDEMQERIAHHRARR-----PEHWRTVEAPLDL 65 (175)
T ss_pred CeEEEecCccCCchHHHHHHHHhhCCceEEEEe----------cCCCCHHHHHHHHHHHhcC-----CCcceEEeccccH
Confidence 4689999999999999999999854 455555 4444444333333332222 224533322222
Q ss_pred -HHHhhcCCCcEEEEEecCHH
Q 022951 152 -EILEGVTDIDLVINLKLREE 171 (289)
Q Consensus 152 -~~l~~~~~~d~vI~Ld~~~e 171 (289)
..+.....++-+|.+||=.-
T Consensus 66 ~~~L~~~~~~~~~VLvDcLt~ 86 (175)
T COG2087 66 ATLLEALIEPGDVVLVDCLTL 86 (175)
T ss_pred HHHHHhcccCCCEEEEEcHHH
Confidence 55555555556777776543
No 349
>TIGR01618 phage_P_loop phage nucleotide-binding protein. This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.
Probab=96.45 E-value=0.0022 Score=56.34 Aligned_cols=34 Identities=18% Similarity=0.202 Sum_probs=26.2
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhCCCeeehHHH
Q 022951 73 KHVQWVFLGCPGVGKGTYASRLSNLLGVPHIATGDL 108 (289)
Q Consensus 73 ~~~~Ivl~GppGsGKSTlak~La~~lg~~~i~~d~l 108 (289)
.+..++|+|+||+||||+|+.|+. ...+++.|.-
T Consensus 11 ~~~~~liyG~~G~GKtt~a~~~~~--~~~~~~~d~~ 44 (220)
T TIGR01618 11 IPNMYLIYGKPGTGKTSTIKYLPG--KTLVLSFDMS 44 (220)
T ss_pred CCcEEEEECCCCCCHHHHHHhcCC--CCEEEecccc
Confidence 356799999999999999999963 3555665543
No 350
>PRK09183 transposase/IS protein; Provisional
Probab=96.45 E-value=0.0037 Score=56.26 Aligned_cols=38 Identities=37% Similarity=0.443 Sum_probs=28.6
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHHh---C--CCeeehHHHHH
Q 022951 73 KHVQWVFLGCPGVGKGTYASRLSNLL---G--VPHIATGDLLD 110 (289)
Q Consensus 73 ~~~~Ivl~GppGsGKSTlak~La~~l---g--~~~i~~d~l~~ 110 (289)
+...++|.||||+|||+++..|+... | +.+++..+++.
T Consensus 101 ~~~~v~l~Gp~GtGKThLa~al~~~a~~~G~~v~~~~~~~l~~ 143 (259)
T PRK09183 101 RNENIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFTTAADLLL 143 (259)
T ss_pred cCCeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeHHHHHH
Confidence 44578899999999999999997653 3 34566666653
No 351
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=96.44 E-value=0.0046 Score=49.49 Aligned_cols=29 Identities=24% Similarity=0.340 Sum_probs=25.8
Q ss_pred CCCCceEEEEEcCCCCCHHHHHHHHHHHh
Q 022951 70 GEGKHVQWVFLGCPGVGKGTYASRLSNLL 98 (289)
Q Consensus 70 ~~~~~~~Ivl~GppGsGKSTlak~La~~l 98 (289)
.+.+|+++.+-|++|+|||.+++.||+.+
T Consensus 49 ~p~KpLVlSfHG~tGtGKn~v~~liA~~l 77 (127)
T PF06309_consen 49 NPRKPLVLSFHGWTGTGKNFVSRLIAEHL 77 (127)
T ss_pred CCCCCEEEEeecCCCCcHHHHHHHHHHHH
Confidence 34578889999999999999999999985
No 352
>PRK12377 putative replication protein; Provisional
Probab=96.43 E-value=0.004 Score=55.77 Aligned_cols=38 Identities=34% Similarity=0.638 Sum_probs=30.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHh---C--CCeeehHHHHHHH
Q 022951 75 VQWVFLGCPGVGKGTYASRLSNLL---G--VPHIATGDLLDEI 112 (289)
Q Consensus 75 ~~Ivl~GppGsGKSTlak~La~~l---g--~~~i~~d~l~~~~ 112 (289)
..++|.|+||+|||+++..|+..+ | +.+++..+++..+
T Consensus 102 ~~l~l~G~~GtGKThLa~AIa~~l~~~g~~v~~i~~~~l~~~l 144 (248)
T PRK12377 102 TNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVTVPDVMSRL 144 (248)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEHHHHHHHH
Confidence 468999999999999999999877 3 4567777777443
No 353
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=96.43 E-value=0.014 Score=56.61 Aligned_cols=37 Identities=22% Similarity=0.404 Sum_probs=29.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHh-------CCCeeehHHHHHHH
Q 022951 76 QWVFLGCPGVGKGTYASRLSNLL-------GVPHIATGDLLDEI 112 (289)
Q Consensus 76 ~Ivl~GppGsGKSTlak~La~~l-------g~~~i~~d~l~~~~ 112 (289)
-++|.||+|+|||++++.++..+ .+.|++..+++.++
T Consensus 132 ~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~~~~f~~~~ 175 (440)
T PRK14088 132 PLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKFLNDL 175 (440)
T ss_pred eEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHH
Confidence 38999999999999999999874 34677877766444
No 354
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=96.43 E-value=0.0028 Score=65.22 Aligned_cols=31 Identities=29% Similarity=0.385 Sum_probs=27.1
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHHHhCCCeee
Q 022951 74 HVQWVFLGCPGVGKGTYASRLSNLLGVPHIA 104 (289)
Q Consensus 74 ~~~Ivl~GppGsGKSTlak~La~~lg~~~i~ 104 (289)
+.-|+|.||||+||||+++.|+..++..++.
T Consensus 212 ~~giLL~GppGtGKT~laraia~~~~~~~i~ 242 (733)
T TIGR01243 212 PKGVLLYGPPGTGKTLLAKAVANEAGAYFIS 242 (733)
T ss_pred CceEEEECCCCCChHHHHHHHHHHhCCeEEE
Confidence 4568999999999999999999999876654
No 355
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=96.42 E-value=0.0029 Score=51.05 Aligned_cols=23 Identities=30% Similarity=0.367 Sum_probs=20.7
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHH
Q 022951 74 HVQWVFLGCPGVGKGTYASRLSN 96 (289)
Q Consensus 74 ~~~Ivl~GppGsGKSTlak~La~ 96 (289)
.++|+|.|++||||||+...|..
T Consensus 3 ~~~i~~~G~~g~GKttl~~~l~~ 25 (168)
T cd04163 3 SGFVAIVGRPNVGKSTLLNALVG 25 (168)
T ss_pred eeEEEEECCCCCCHHHHHHHHhC
Confidence 46799999999999999999864
No 356
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=96.41 E-value=0.0031 Score=58.58 Aligned_cols=30 Identities=37% Similarity=0.589 Sum_probs=26.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhCCCeee
Q 022951 75 VQWVFLGCPGVGKGTYASRLSNLLGVPHIA 104 (289)
Q Consensus 75 ~~Ivl~GppGsGKSTlak~La~~lg~~~i~ 104 (289)
..++|.|+||+|||++++.+|+.++.+++.
T Consensus 44 ~~vll~G~PG~gKT~la~~lA~~l~~~~~~ 73 (329)
T COG0714 44 GHVLLEGPPGVGKTLLARALARALGLPFVR 73 (329)
T ss_pred CCEEEECCCCccHHHHHHHHHHHhCCCeEE
Confidence 347899999999999999999999876654
No 357
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=96.41 E-value=0.0034 Score=57.26 Aligned_cols=26 Identities=27% Similarity=0.354 Sum_probs=22.9
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHHh
Q 022951 73 KHVQWVFLGCPGVGKGTYASRLSNLL 98 (289)
Q Consensus 73 ~~~~Ivl~GppGsGKSTlak~La~~l 98 (289)
++.+|+|+||+|+||||++..|+..+
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~~~ 218 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAARF 218 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 46789999999999999999998765
No 358
>cd03116 MobB Molybdenum is an essential trace element in the form of molybdenum cofactor (Moco) which is associated with the metabolism of nitrogen, carbon and sulfur by redox active enzymes. In E. coli, the synthesis of Moco involves genes from several loci: moa, mob, mod, moe and mog. The mob locus contains mobA and mobB genes. MobB catalyzes the attachment of the guanine dinucleotide to molybdopterin.
Probab=96.40 E-value=0.0037 Score=52.17 Aligned_cols=24 Identities=33% Similarity=0.412 Sum_probs=22.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHh
Q 022951 75 VQWVFLGCPGVGKGTYASRLSNLL 98 (289)
Q Consensus 75 ~~Ivl~GppGsGKSTlak~La~~l 98 (289)
.+|.|+|++||||||++++|...+
T Consensus 2 ~vi~i~G~~gsGKTTli~~L~~~l 25 (159)
T cd03116 2 KVIGFVGYSGSGKTTLLEKLIPAL 25 (159)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 468899999999999999999987
No 359
>PHA03135 thymidine kinase; Provisional
Probab=96.40 E-value=0.13 Score=47.89 Aligned_cols=25 Identities=16% Similarity=0.288 Sum_probs=22.3
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHH
Q 022951 73 KHVQWVFLGCPGVGKGTYASRLSNL 97 (289)
Q Consensus 73 ~~~~Ivl~GppGsGKSTlak~La~~ 97 (289)
.-.+|.|.|+.|+||||+++.|++.
T Consensus 9 ~~~rIYlDG~~GvGKTT~~~~l~~~ 33 (343)
T PHA03135 9 QLIRVYLDGPFGIGKTSMLNEMPDH 33 (343)
T ss_pred eEEEEEEECCCCCCHHHHHHHHHHh
Confidence 4478899999999999999999985
No 360
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=96.39 E-value=0.0032 Score=53.65 Aligned_cols=25 Identities=24% Similarity=0.341 Sum_probs=22.2
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHHHh
Q 022951 74 HVQWVFLGCPGVGKGTYASRLSNLL 98 (289)
Q Consensus 74 ~~~Ivl~GppGsGKSTlak~La~~l 98 (289)
...++|+|++||||||+.+.|...+
T Consensus 25 g~~i~I~G~tGSGKTTll~aL~~~i 49 (186)
T cd01130 25 RKNILISGGTGSGKTTLLNALLAFI 49 (186)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhc
Confidence 4578999999999999999998765
No 361
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=96.38 E-value=0.0033 Score=52.89 Aligned_cols=30 Identities=23% Similarity=0.226 Sum_probs=23.3
Q ss_pred EEEEcCCCCCHHHHHHHHHHHh-----CCCeeehH
Q 022951 77 WVFLGCPGVGKGTYASRLSNLL-----GVPHIATG 106 (289)
Q Consensus 77 Ivl~GppGsGKSTlak~La~~l-----g~~~i~~d 106 (289)
++|.|+||+|||+++..++... .+.|++++
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~~g~~v~~~s~e 36 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLARGEPGLYVTLE 36 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHCCCcEEEEECC
Confidence 6899999999999998876643 35567653
No 362
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=96.38 E-value=0.0034 Score=54.34 Aligned_cols=29 Identities=31% Similarity=0.425 Sum_probs=25.1
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHHHHhC
Q 022951 71 EGKHVQWVFLGCPGVGKGTYASRLSNLLG 99 (289)
Q Consensus 71 ~~~~~~Ivl~GppGsGKSTlak~La~~lg 99 (289)
+...++|.|+|++||||||+.+.|.+.++
T Consensus 19 ~~~~~~i~~~G~~gsGKTTli~~l~~~~~ 47 (207)
T TIGR00073 19 KHGLVVLNFMSSPGSGKTTLIEKLIDNLK 47 (207)
T ss_pred hcCcEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 34678899999999999999999988754
No 363
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=96.38 E-value=0.0098 Score=53.42 Aligned_cols=40 Identities=43% Similarity=0.625 Sum_probs=32.0
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHHh---C--CCeeehHHHHHHH
Q 022951 73 KHVQWVFLGCPGVGKGTYASRLSNLL---G--VPHIATGDLLDEI 112 (289)
Q Consensus 73 ~~~~Ivl~GppGsGKSTlak~La~~l---g--~~~i~~d~l~~~~ 112 (289)
+...++|.|+||+|||.+|..|+..+ | +.++.+.+++.++
T Consensus 104 ~~~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~~~el~~~L 148 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFITAPDLLSKL 148 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHH
Confidence 45679999999999999998888765 3 4667788888554
No 364
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=96.38 E-value=0.0029 Score=55.71 Aligned_cols=25 Identities=28% Similarity=0.302 Sum_probs=21.1
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHH
Q 022951 73 KHVQWVFLGCPGVGKGTYASRLSNL 97 (289)
Q Consensus 73 ~~~~Ivl~GppGsGKSTlak~La~~ 97 (289)
+.-++.|.||+||||||+...|+--
T Consensus 30 ~Ge~vaI~GpSGSGKSTLLniig~l 54 (226)
T COG1136 30 AGEFVAIVGPSGSGKSTLLNLLGGL 54 (226)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcc
Confidence 3457899999999999999988753
No 365
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=96.37 E-value=0.013 Score=53.97 Aligned_cols=71 Identities=13% Similarity=0.106 Sum_probs=41.3
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHHHhCCC-----eeehHHHHHHHHHcCCccCHHHHHHHHHHHHHcccccCCceEEEcC
Q 022951 74 HVQWVFLGCPGVGKGTYASRLSNLLGVP-----HIATGDLLDEIVSQGKLVSDEIIINLLSKRLEAGEAKGEAGFILDG 147 (289)
Q Consensus 74 ~~~Ivl~GppGsGKSTlak~La~~lg~~-----~i~~d~l~~~~l~~g~~v~~~~~~~ll~~~l~~~~~~~~~g~Ildg 147 (289)
++.++|+||+|+||+|+|+.+++.+.+. |.+.-.+. . ..|..+.-+.+.++++..-........+-+|++.
T Consensus 26 ~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~-~--~~~~~i~v~~ir~~~~~~~~~p~~~~~kv~iI~~ 101 (313)
T PRK05564 26 SHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFK-P--INKKSIGVDDIRNIIEEVNKKPYEGDKKVIIIYN 101 (313)
T ss_pred CceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEec-c--ccCCCCCHHHHHHHHHHHhcCcccCCceEEEEec
Confidence 5678999999999999999999987432 22211111 0 0344455555555554322222222234677776
No 366
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=96.37 E-value=0.0034 Score=51.93 Aligned_cols=25 Identities=24% Similarity=0.339 Sum_probs=22.0
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHH
Q 022951 73 KHVQWVFLGCPGVGKGTYASRLSNL 97 (289)
Q Consensus 73 ~~~~Ivl~GppGsGKSTlak~La~~ 97 (289)
+..+|+|+|++||||||+.+.|...
T Consensus 13 ~~~~v~i~G~~g~GKStLl~~l~~~ 37 (173)
T cd04155 13 EEPRILILGLDNAGKTTILKQLASE 37 (173)
T ss_pred CccEEEEEccCCCCHHHHHHHHhcC
Confidence 4678999999999999999999753
No 367
>COG1855 ATPase (PilT family) [General function prediction only]
Probab=96.36 E-value=0.0028 Score=60.61 Aligned_cols=23 Identities=35% Similarity=0.696 Sum_probs=21.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHh
Q 022951 76 QWVFLGCPGVGKGTYASRLSNLL 98 (289)
Q Consensus 76 ~Ivl~GppGsGKSTlak~La~~l 98 (289)
=|+|.|+||+||||+|+.||+-|
T Consensus 265 GILIAG~PGaGKsTFaqAlAefy 287 (604)
T COG1855 265 GILIAGAPGAGKSTFAQALAEFY 287 (604)
T ss_pred ceEEecCCCCChhHHHHHHHHHH
Confidence 38899999999999999999977
No 368
>KOG0745 consensus Putative ATP-dependent Clp-type protease (AAA+ ATPase superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.34 E-value=0.0045 Score=59.01 Aligned_cols=34 Identities=29% Similarity=0.389 Sum_probs=29.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhCCCeeehHHH
Q 022951 75 VQWVFLGCPGVGKGTYASRLSNLLGVPHIATGDL 108 (289)
Q Consensus 75 ~~Ivl~GppGsGKSTlak~La~~lg~~~i~~d~l 108 (289)
-.|++.||+|||||-+|+.||+-+++++.-.|..
T Consensus 227 SNvLllGPtGsGKTllaqTLAr~ldVPfaIcDcT 260 (564)
T KOG0745|consen 227 SNVLLLGPTGSGKTLLAQTLARVLDVPFAICDCT 260 (564)
T ss_pred ccEEEECCCCCchhHHHHHHHHHhCCCeEEeccc
Confidence 3689999999999999999999999998765443
No 369
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=96.32 E-value=0.032 Score=54.26 Aligned_cols=28 Identities=29% Similarity=0.440 Sum_probs=24.6
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHHHhCCC
Q 022951 74 HVQWVFLGCPGVGKGTYASRLSNLLGVP 101 (289)
Q Consensus 74 ~~~Ivl~GppGsGKSTlak~La~~lg~~ 101 (289)
++.++|.||+|+||||+|+.+|+.+...
T Consensus 39 ~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~ 66 (451)
T PRK06305 39 AHAYLFSGIRGTGKTTLARIFAKALNCQ 66 (451)
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHhcCC
Confidence 4668999999999999999999998653
No 370
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=96.32 E-value=0.0029 Score=50.51 Aligned_cols=25 Identities=32% Similarity=0.372 Sum_probs=21.7
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHHHh
Q 022951 74 HVQWVFLGCPGVGKGTYASRLSNLL 98 (289)
Q Consensus 74 ~~~Ivl~GppGsGKSTlak~La~~l 98 (289)
.-+++|+|+.||||||+.+.|+..+
T Consensus 11 g~~~~i~G~nGsGKStLl~~l~g~~ 35 (137)
T PF00005_consen 11 GEIVAIVGPNGSGKSTLLKALAGLL 35 (137)
T ss_dssp TSEEEEEESTTSSHHHHHHHHTTSS
T ss_pred CCEEEEEccCCCccccceeeecccc
Confidence 4578999999999999999997654
No 371
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=96.31 E-value=0.0033 Score=64.70 Aligned_cols=30 Identities=33% Similarity=0.552 Sum_probs=26.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhCCCeee
Q 022951 75 VQWVFLGCPGVGKGTYASRLSNLLGVPHIA 104 (289)
Q Consensus 75 ~~Ivl~GppGsGKSTlak~La~~lg~~~i~ 104 (289)
..++|+||||+|||++|+.||+.++.+++.
T Consensus 489 ~~~Lf~GP~GvGKT~lAk~LA~~l~~~~i~ 518 (758)
T PRK11034 489 GSFLFAGPTGVGKTEVTVQLSKALGIELLR 518 (758)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCCcEE
Confidence 368999999999999999999999876653
No 372
>PRK13768 GTPase; Provisional
Probab=96.29 E-value=0.004 Score=55.83 Aligned_cols=25 Identities=40% Similarity=0.523 Sum_probs=22.1
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHHHh
Q 022951 74 HVQWVFLGCPGVGKGTYASRLSNLL 98 (289)
Q Consensus 74 ~~~Ivl~GppGsGKSTlak~La~~l 98 (289)
+++++|.|++||||||++..++..+
T Consensus 2 ~~~i~v~G~~G~GKTt~~~~~~~~l 26 (253)
T PRK13768 2 MYIVFFLGTAGSGKTTLTKALSDWL 26 (253)
T ss_pred cEEEEEECCCCccHHHHHHHHHHHH
Confidence 3678999999999999999988776
No 373
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=96.28 E-value=0.04 Score=51.40 Aligned_cols=28 Identities=29% Similarity=0.425 Sum_probs=25.1
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHHHhCCC
Q 022951 74 HVQWVFLGCPGVGKGTYASRLSNLLGVP 101 (289)
Q Consensus 74 ~~~Ivl~GppGsGKSTlak~La~~lg~~ 101 (289)
++-++|.||+|+||+|+|..+|+.+.+.
T Consensus 22 ~ha~Lf~G~~G~GK~~~A~~~A~~llC~ 49 (328)
T PRK05707 22 PHAYLLHGPAGIGKRALAERLAAALLCE 49 (328)
T ss_pred ceeeeeECCCCCCHHHHHHHHHHHHcCC
Confidence 5678999999999999999999998653
No 374
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.28 E-value=0.034 Score=52.36 Aligned_cols=27 Identities=33% Similarity=0.399 Sum_probs=24.1
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHHHhCC
Q 022951 74 HVQWVFLGCPGVGKGTYASRLSNLLGV 100 (289)
Q Consensus 74 ~~~Ivl~GppGsGKSTlak~La~~lg~ 100 (289)
++.++|+||||+||||+++.|++.++.
T Consensus 39 ~~~~L~~G~~G~GKt~~a~~la~~l~~ 65 (367)
T PRK14970 39 AQALLFCGPRGVGKTTCARILARKINQ 65 (367)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 467899999999999999999998864
No 375
>PHA02624 large T antigen; Provisional
Probab=96.27 E-value=0.005 Score=61.26 Aligned_cols=33 Identities=33% Similarity=0.484 Sum_probs=29.0
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhCCCeeeh
Q 022951 73 KHVQWVFLGCPGVGKGTYASRLSNLLGVPHIAT 105 (289)
Q Consensus 73 ~~~~Ivl~GppGsGKSTlak~La~~lg~~~i~~ 105 (289)
+...|+|.||||+||||++..|.+.+|...+++
T Consensus 430 Kk~~il~~GPpnTGKTtf~~sLl~~L~G~vlsV 462 (647)
T PHA02624 430 KRRYWLFKGPVNSGKTTLAAALLDLCGGKSLNV 462 (647)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHcCCeEEEe
Confidence 456899999999999999999999997767765
No 376
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=96.27 E-value=0.0037 Score=55.21 Aligned_cols=28 Identities=36% Similarity=0.458 Sum_probs=24.8
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHHHHh
Q 022951 71 EGKHVQWVFLGCPGVGKGTYASRLSNLL 98 (289)
Q Consensus 71 ~~~~~~Ivl~GppGsGKSTlak~La~~l 98 (289)
.++.+.++|.||||+||||-+..||..+
T Consensus 45 ~gnmP~liisGpPG~GKTTsi~~LAr~L 72 (333)
T KOG0991|consen 45 EGNMPNLIISGPPGTGKTTSILCLAREL 72 (333)
T ss_pred cCCCCceEeeCCCCCchhhHHHHHHHHH
Confidence 4566789999999999999999999876
No 377
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=96.26 E-value=0.01 Score=56.39 Aligned_cols=37 Identities=27% Similarity=0.290 Sum_probs=30.0
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhC-------CCeeehHHHH
Q 022951 73 KHVQWVFLGCPGVGKGTYASRLSNLLG-------VPHIATGDLL 109 (289)
Q Consensus 73 ~~~~Ivl~GppGsGKSTlak~La~~lg-------~~~i~~d~l~ 109 (289)
+..+|.|.||.|+||||....||..|. +-+|++|.+-
T Consensus 202 ~~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYR 245 (407)
T COG1419 202 QKRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYR 245 (407)
T ss_pred cCcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccch
Confidence 478899999999999998888988874 4667776655
No 378
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=96.25 E-value=0.0043 Score=48.22 Aligned_cols=21 Identities=33% Similarity=0.583 Sum_probs=19.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHH
Q 022951 76 QWVFLGCPGVGKGTYASRLSN 96 (289)
Q Consensus 76 ~Ivl~GppGsGKSTlak~La~ 96 (289)
.|+|.|++|+||||+.+.|..
T Consensus 1 ~V~iiG~~~~GKSTlin~l~~ 21 (116)
T PF01926_consen 1 RVAIIGRPNVGKSTLINALTG 21 (116)
T ss_dssp EEEEEESTTSSHHHHHHHHHT
T ss_pred CEEEECCCCCCHHHHHHHHhc
Confidence 478999999999999999974
No 379
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.25 E-value=0.0043 Score=58.68 Aligned_cols=26 Identities=27% Similarity=0.429 Sum_probs=22.8
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHHh
Q 022951 73 KHVQWVFLGCPGVGKGTYASRLSNLL 98 (289)
Q Consensus 73 ~~~~Ivl~GppGsGKSTlak~La~~l 98 (289)
+..+++|+||+|+||||++..|+..+
T Consensus 136 ~g~ii~lvGptGvGKTTtiakLA~~~ 161 (374)
T PRK14722 136 RGGVFALMGPTGVGKTTTTAKLAARC 161 (374)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 45688999999999999999999764
No 380
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=96.24 E-value=0.005 Score=63.11 Aligned_cols=34 Identities=26% Similarity=0.314 Sum_probs=28.1
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHHHhCCCeeehHH
Q 022951 74 HVQWVFLGCPGVGKGTYASRLSNLLGVPHIATGD 107 (289)
Q Consensus 74 ~~~Ivl~GppGsGKSTlak~La~~lg~~~i~~d~ 107 (289)
...++|.||||+||||+|+.+++.++..++..+.
T Consensus 52 ~~slLL~GPpGtGKTTLA~aIA~~~~~~f~~lna 85 (725)
T PRK13341 52 VGSLILYGPPGVGKTTLARIIANHTRAHFSSLNA 85 (725)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhcCcceeehh
Confidence 3467899999999999999999998876665543
No 381
>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB. This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.
Probab=96.24 E-value=0.004 Score=51.66 Aligned_cols=23 Identities=30% Similarity=0.339 Sum_probs=20.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHh
Q 022951 76 QWVFLGCPGVGKGTYASRLSNLL 98 (289)
Q Consensus 76 ~Ivl~GppGsGKSTlak~La~~l 98 (289)
+|.|+|++||||||++.+|...+
T Consensus 1 vi~i~G~~gsGKTtl~~~l~~~l 23 (155)
T TIGR00176 1 VLQIVGPKNSGKTTLIERLVKAL 23 (155)
T ss_pred CEEEECCCCCCHHHHHHHHHHHH
Confidence 36899999999999999999876
No 382
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=96.23 E-value=0.016 Score=53.78 Aligned_cols=37 Identities=22% Similarity=0.142 Sum_probs=27.0
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHHh---C--CCeeehHHHH
Q 022951 73 KHVQWVFLGCPGVGKGTYASRLSNLL---G--VPHIATGDLL 109 (289)
Q Consensus 73 ~~~~Ivl~GppGsGKSTlak~La~~l---g--~~~i~~d~l~ 109 (289)
+..++.|.|||||||||+|-.++... | +.||+..+..
T Consensus 54 ~G~iteI~G~~GsGKTtLaL~~~~~~~~~g~~v~yId~E~~~ 95 (321)
T TIGR02012 54 RGRIIEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEHAL 95 (321)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEcccchh
Confidence 45688899999999999998876544 2 4566654433
No 383
>COG1220 HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=96.21 E-value=0.0051 Score=57.00 Aligned_cols=31 Identities=39% Similarity=0.615 Sum_probs=28.4
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHHHhCCCeee
Q 022951 74 HVQWVFLGCPGVGKGTYASRLSNLLGVPHIA 104 (289)
Q Consensus 74 ~~~Ivl~GppGsGKSTlak~La~~lg~~~i~ 104 (289)
|..|+++||.|+|||-+|++||+.-|.|++-
T Consensus 50 PKNILMIGpTGVGKTEIARRLAkl~~aPFiK 80 (444)
T COG1220 50 PKNILMIGPTGVGKTEIARRLAKLAGAPFIK 80 (444)
T ss_pred ccceEEECCCCCcHHHHHHHHHHHhCCCeEE
Confidence 5789999999999999999999999888874
No 384
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.21 E-value=0.055 Score=53.16 Aligned_cols=27 Identities=33% Similarity=0.522 Sum_probs=24.0
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHHHhCC
Q 022951 74 HVQWVFLGCPGVGKGTYASRLSNLLGV 100 (289)
Q Consensus 74 ~~~Ivl~GppGsGKSTlak~La~~lg~ 100 (289)
++.++|+||+|+||||+|+.+|+.+++
T Consensus 38 ~hayLf~Gp~G~GKTtlAr~lAk~L~c 64 (486)
T PRK14953 38 SHAYIFAGPRGTGKTTIARILAKVLNC 64 (486)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 356789999999999999999999875
No 385
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=96.21 E-value=0.0038 Score=54.19 Aligned_cols=25 Identities=40% Similarity=0.663 Sum_probs=20.1
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHHHh
Q 022951 74 HVQWVFLGCPGVGKGTYASRLSNLL 98 (289)
Q Consensus 74 ~~~Ivl~GppGsGKSTlak~La~~l 98 (289)
.+-++|.||||+|||++|++|...+
T Consensus 22 ~h~lLl~GppGtGKTmlA~~l~~lL 46 (206)
T PF01078_consen 22 GHHLLLIGPPGTGKTMLARRLPSLL 46 (206)
T ss_dssp C--EEEES-CCCTHHHHHHHHHHCS
T ss_pred CCCeEEECCCCCCHHHHHHHHHHhC
Confidence 3578999999999999999999865
No 386
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=96.20 E-value=0.0047 Score=56.27 Aligned_cols=28 Identities=32% Similarity=0.429 Sum_probs=25.2
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHHHHh
Q 022951 71 EGKHVQWVFLGCPGVGKGTYASRLSNLL 98 (289)
Q Consensus 71 ~~~~~~Ivl~GppGsGKSTlak~La~~l 98 (289)
.++.++|-|+|+||+||||+...|...|
T Consensus 48 tG~a~viGITG~PGaGKSTli~~L~~~l 75 (323)
T COG1703 48 TGNAHVIGITGVPGAGKSTLIEALGREL 75 (323)
T ss_pred CCCCcEEEecCCCCCchHHHHHHHHHHH
Confidence 4567899999999999999999999887
No 387
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=96.20 E-value=0.0043 Score=54.14 Aligned_cols=27 Identities=26% Similarity=0.318 Sum_probs=22.2
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHHHh
Q 022951 72 GKHVQWVFLGCPGVGKGTYASRLSNLL 98 (289)
Q Consensus 72 ~~~~~Ivl~GppGsGKSTlak~La~~l 98 (289)
.+..+-.|+||+||||||+.+.|-...
T Consensus 31 ~~~~VTAlIGPSGcGKST~LR~lNRmn 57 (253)
T COG1117 31 PKNKVTALIGPSGCGKSTLLRCLNRMN 57 (253)
T ss_pred cCCceEEEECCCCcCHHHHHHHHHhhc
Confidence 345677899999999999999886654
No 388
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.19 E-value=0.0039 Score=59.63 Aligned_cols=29 Identities=24% Similarity=0.551 Sum_probs=26.2
Q ss_pred EEEEcCCCCCHHHHHHHHHHHhCCCeeeh
Q 022951 77 WVFLGCPGVGKGTYASRLSNLLGVPHIAT 105 (289)
Q Consensus 77 Ivl~GppGsGKSTlak~La~~lg~~~i~~ 105 (289)
.+|.||||+||||+..++|..+++-+++.
T Consensus 238 YLLYGPPGTGKSS~IaAmAn~L~ydIydL 266 (457)
T KOG0743|consen 238 YLLYGPPGTGKSSFIAAMANYLNYDIYDL 266 (457)
T ss_pred ceeeCCCCCCHHHHHHHHHhhcCCceEEe
Confidence 58999999999999999999998877765
No 389
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=96.17 E-value=0.02 Score=53.18 Aligned_cols=35 Identities=26% Similarity=0.159 Sum_probs=26.2
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHHh---C--CCeeehHH
Q 022951 73 KHVQWVFLGCPGVGKGTYASRLSNLL---G--VPHIATGD 107 (289)
Q Consensus 73 ~~~~Ivl~GppGsGKSTlak~La~~l---g--~~~i~~d~ 107 (289)
+..++.|.|||||||||+|-.++... | +.||++.+
T Consensus 54 ~G~iteI~Gp~GsGKTtLal~~~~~~~~~g~~~vyId~E~ 93 (325)
T cd00983 54 KGRIIEIYGPESSGKTTLALHAIAEAQKLGGTVAFIDAEH 93 (325)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEECccc
Confidence 35678899999999999999887543 3 45666533
No 390
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=96.17 E-value=0.0048 Score=53.18 Aligned_cols=23 Identities=30% Similarity=0.372 Sum_probs=16.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHh
Q 022951 76 QWVFLGCPGVGKGTYASRLSNLL 98 (289)
Q Consensus 76 ~Ivl~GppGsGKSTlak~La~~l 98 (289)
+.+|.||||+||||+...+...+
T Consensus 19 ~~~i~GpPGTGKT~~l~~~i~~~ 41 (236)
T PF13086_consen 19 ITLIQGPPGTGKTTTLASIIAQL 41 (236)
T ss_dssp -EEEE-STTSSHHHHHHHHHHHH
T ss_pred CEEEECCCCCChHHHHHHHHHHh
Confidence 57899999999998766666554
No 391
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=96.16 E-value=0.0056 Score=58.90 Aligned_cols=27 Identities=33% Similarity=0.545 Sum_probs=23.9
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHHHh
Q 022951 72 GKHVQWVFLGCPGVGKGTYASRLSNLL 98 (289)
Q Consensus 72 ~~~~~Ivl~GppGsGKSTlak~La~~l 98 (289)
.++.+|.|+|++||||||++..||..+
T Consensus 98 ~~~~vi~lvG~~GvGKTTtaaKLA~~l 124 (429)
T TIGR01425 98 GKQNVIMFVGLQGSGKTTTCTKLAYYY 124 (429)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 346789999999999999999999876
No 392
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=96.16 E-value=0.0061 Score=55.99 Aligned_cols=26 Identities=31% Similarity=0.363 Sum_probs=23.0
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHHh
Q 022951 73 KHVQWVFLGCPGVGKGTYASRLSNLL 98 (289)
Q Consensus 73 ~~~~Ivl~GppGsGKSTlak~La~~l 98 (289)
.+.+|.|+|+|||||||++..|+..+
T Consensus 33 ~~~~i~i~G~~G~GKttl~~~l~~~~ 58 (300)
T TIGR00750 33 NAHRVGITGTPGAGKSTLLEALGMEL 58 (300)
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHH
Confidence 46788999999999999999988865
No 393
>PRK10867 signal recognition particle protein; Provisional
Probab=96.15 E-value=0.0057 Score=59.06 Aligned_cols=27 Identities=30% Similarity=0.436 Sum_probs=22.5
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHHHh
Q 022951 72 GKHVQWVFLGCPGVGKGTYASRLSNLL 98 (289)
Q Consensus 72 ~~~~~Ivl~GppGsGKSTlak~La~~l 98 (289)
.++.+|+++|++||||||++..||..|
T Consensus 98 ~~p~vI~~vG~~GsGKTTtaakLA~~l 124 (433)
T PRK10867 98 KPPTVIMMVGLQGAGKTTTAGKLAKYL 124 (433)
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHHHH
Confidence 346889999999999999888887654
No 394
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=96.15 E-value=0.014 Score=58.43 Aligned_cols=36 Identities=17% Similarity=0.342 Sum_probs=29.4
Q ss_pred EEEEcCCCCCHHHHHHHHHHHh-------CCCeeehHHHHHHH
Q 022951 77 WVFLGCPGVGKGTYASRLSNLL-------GVPHIATGDLLDEI 112 (289)
Q Consensus 77 Ivl~GppGsGKSTlak~La~~l-------g~~~i~~d~l~~~~ 112 (289)
++|+|++|+|||.|++.++..+ .+.|++..+++.++
T Consensus 317 L~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yitaeef~~el 359 (617)
T PRK14086 317 LFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVSSEEFTNEF 359 (617)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHHHHH
Confidence 7899999999999999998864 34788887777444
No 395
>PRK04296 thymidine kinase; Provisional
Probab=96.14 E-value=0.0053 Score=52.54 Aligned_cols=24 Identities=17% Similarity=0.007 Sum_probs=21.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHh
Q 022951 75 VQWVFLGCPGVGKGTYASRLSNLL 98 (289)
Q Consensus 75 ~~Ivl~GppGsGKSTlak~La~~l 98 (289)
.+++++|+||+||||++..++..+
T Consensus 3 ~i~litG~~GsGKTT~~l~~~~~~ 26 (190)
T PRK04296 3 KLEFIYGAMNSGKSTELLQRAYNY 26 (190)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHH
Confidence 578999999999999998888776
No 396
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=96.14 E-value=0.02 Score=55.65 Aligned_cols=35 Identities=14% Similarity=0.180 Sum_probs=27.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHh-----CCCeeehHHHHH
Q 022951 76 QWVFLGCPGVGKGTYASRLSNLL-----GVPHIATGDLLD 110 (289)
Q Consensus 76 ~Ivl~GppGsGKSTlak~La~~l-----g~~~i~~d~l~~ 110 (289)
-++|.|++|+|||++++.++..+ .+.|++.+++..
T Consensus 143 pl~L~G~~G~GKTHLl~Ai~~~l~~~~~~v~yi~~~~f~~ 182 (445)
T PRK12422 143 PIYLFGPEGSGKTHLMQAAVHALRESGGKILYVRSELFTE 182 (445)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEeeHHHHHH
Confidence 36889999999999999999865 345677766553
No 397
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=96.14 E-value=0.0045 Score=54.80 Aligned_cols=25 Identities=32% Similarity=0.328 Sum_probs=21.3
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHHHh
Q 022951 74 HVQWVFLGCPGVGKGTYASRLSNLL 98 (289)
Q Consensus 74 ~~~Ivl~GppGsGKSTlak~La~~l 98 (289)
.-.+.|.|++||||||+++.|+...
T Consensus 33 Ge~lgivGeSGsGKSTL~r~l~Gl~ 57 (252)
T COG1124 33 GETLGIVGESGSGKSTLARLLAGLE 57 (252)
T ss_pred CCEEEEEcCCCCCHHHHHHHHhccc
Confidence 4567899999999999999998643
No 398
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=96.14 E-value=0.0055 Score=54.51 Aligned_cols=26 Identities=31% Similarity=0.409 Sum_probs=22.4
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHHh
Q 022951 73 KHVQWVFLGCPGVGKGTYASRLSNLL 98 (289)
Q Consensus 73 ~~~~Ivl~GppGsGKSTlak~La~~l 98 (289)
.+.+++|+|++||||||+...|...+
T Consensus 12 ~~fr~viIG~sGSGKT~li~~lL~~~ 37 (241)
T PF04665_consen 12 DPFRMVIIGKSGSGKTTLIKSLLYYL 37 (241)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHhh
Confidence 45789999999999999998887655
No 399
>PRK10646 ADP-binding protein; Provisional
Probab=96.13 E-value=0.0071 Score=50.10 Aligned_cols=27 Identities=26% Similarity=0.357 Sum_probs=24.7
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHHHhCC
Q 022951 74 HVQWVFLGCPGVGKGTYASRLSNLLGV 100 (289)
Q Consensus 74 ~~~Ivl~GppGsGKSTlak~La~~lg~ 100 (289)
..+|+|.|.-|+||||+++.|++.+|.
T Consensus 28 g~vi~L~GdLGaGKTtf~rgl~~~Lg~ 54 (153)
T PRK10646 28 ATVIYLYGDLGAGKTTFSRGFLQALGH 54 (153)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCC
Confidence 357899999999999999999999986
No 400
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=96.13 E-value=0.0056 Score=59.20 Aligned_cols=27 Identities=30% Similarity=0.411 Sum_probs=24.2
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHHHh
Q 022951 72 GKHVQWVFLGCPGVGKGTYASRLSNLL 98 (289)
Q Consensus 72 ~~~~~Ivl~GppGsGKSTlak~La~~l 98 (289)
.++.+|+|+|++|+||||++..||..+
T Consensus 93 ~~p~vI~lvG~~GsGKTTtaakLA~~L 119 (437)
T PRK00771 93 LKPQTIMLVGLQGSGKTTTAAKLARYF 119 (437)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHH
Confidence 457889999999999999999999876
No 401
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=96.13 E-value=0.005 Score=50.34 Aligned_cols=21 Identities=33% Similarity=0.575 Sum_probs=19.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHH
Q 022951 76 QWVFLGCPGVGKGTYASRLSN 96 (289)
Q Consensus 76 ~Ivl~GppGsGKSTlak~La~ 96 (289)
+|+|+|++||||||+.++|..
T Consensus 2 ki~v~G~~~~GKTsli~~~~~ 22 (164)
T smart00173 2 KLVVLGSGGVGKSALTIQFVQ 22 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 689999999999999999874
No 402
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=96.13 E-value=0.0059 Score=57.38 Aligned_cols=36 Identities=31% Similarity=0.528 Sum_probs=26.3
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHHHhC--CCe--eehHHHH
Q 022951 74 HVQWVFLGCPGVGKGTYASRLSNLLG--VPH--IATGDLL 109 (289)
Q Consensus 74 ~~~Ivl~GppGsGKSTlak~La~~lg--~~~--i~~d~l~ 109 (289)
...|+|.||||+|||.+|-.+|+.+| .|+ ++..+++
T Consensus 50 Gr~iLiaGppGtGKTAlA~~ia~eLG~~~PF~~isgSEiy 89 (398)
T PF06068_consen 50 GRAILIAGPPGTGKTALAMAIAKELGEDVPFVSISGSEIY 89 (398)
T ss_dssp T-EEEEEE-TTSSHHHHHHHHHHHCTTTS-EEEEEGGGG-
T ss_pred CcEEEEeCCCCCCchHHHHHHHHHhCCCCCeeEcccceee
Confidence 46789999999999999999999997 555 4444444
No 403
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=96.12 E-value=0.031 Score=54.30 Aligned_cols=36 Identities=17% Similarity=0.352 Sum_probs=28.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHh-----C--CCeeehHHHHHH
Q 022951 76 QWVFLGCPGVGKGTYASRLSNLL-----G--VPHIATGDLLDE 111 (289)
Q Consensus 76 ~Ivl~GppGsGKSTlak~La~~l-----g--~~~i~~d~l~~~ 111 (289)
-++|.||+|+|||++++.++..+ + +.+++..++..+
T Consensus 150 ~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~~~~~~~~ 192 (450)
T PRK00149 150 PLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVTSEKFTND 192 (450)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHH
Confidence 47899999999999999999876 2 456777666533
No 404
>CHL00206 ycf2 Ycf2; Provisional
Probab=96.11 E-value=0.0056 Score=67.55 Aligned_cols=37 Identities=22% Similarity=0.304 Sum_probs=30.7
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhCCCeee--hHHHH
Q 022951 73 KHVQWVFLGCPGVGKGTYASRLSNLLGVPHIA--TGDLL 109 (289)
Q Consensus 73 ~~~~Ivl~GppGsGKSTlak~La~~lg~~~i~--~d~l~ 109 (289)
.+.=|+|.||||+|||.+|++||...+++++. ..+++
T Consensus 1629 pPKGILLiGPPGTGKTlLAKALA~es~VPFIsISgs~fl 1667 (2281)
T CHL00206 1629 PSRGILVIGSIGTGRSYLVKYLATNSYVPFITVFLNKFL 1667 (2281)
T ss_pred CCCceEEECCCCCCHHHHHHHHHHhcCCceEEEEHHHHh
Confidence 34558999999999999999999999988764 45555
No 405
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=96.11 E-value=0.014 Score=60.11 Aligned_cols=25 Identities=32% Similarity=0.452 Sum_probs=22.4
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHHHh
Q 022951 74 HVQWVFLGCPGVGKGTYASRLSNLL 98 (289)
Q Consensus 74 ~~~Ivl~GppGsGKSTlak~La~~l 98 (289)
...++|.||||+|||++++.||+.+
T Consensus 203 ~~n~lL~G~pG~GKT~l~~~la~~~ 227 (731)
T TIGR02639 203 KNNPLLVGEPGVGKTAIAEGLALRI 227 (731)
T ss_pred CCceEEECCCCCCHHHHHHHHHHHH
Confidence 3467899999999999999999987
No 406
>PF13479 AAA_24: AAA domain
Probab=96.11 E-value=0.0042 Score=54.12 Aligned_cols=30 Identities=37% Similarity=0.462 Sum_probs=24.3
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhCCCeeeh
Q 022951 73 KHVQWVFLGCPGVGKGTYASRLSNLLGVPHIAT 105 (289)
Q Consensus 73 ~~~~Ivl~GppGsGKSTlak~La~~lg~~~i~~ 105 (289)
++.+++|.|+||+||||+|..+ -+..+|++
T Consensus 2 ~~~~~lIyG~~G~GKTt~a~~~---~k~l~id~ 31 (213)
T PF13479_consen 2 KPIKILIYGPPGSGKTTLAASL---PKPLFIDT 31 (213)
T ss_pred CceEEEEECCCCCCHHHHHHhC---CCeEEEEe
Confidence 4678999999999999999988 23456665
No 407
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=96.11 E-value=0.0061 Score=63.12 Aligned_cols=32 Identities=25% Similarity=0.413 Sum_probs=27.9
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhCCCeee
Q 022951 73 KHVQWVFLGCPGVGKGTYASRLSNLLGVPHIA 104 (289)
Q Consensus 73 ~~~~Ivl~GppGsGKSTlak~La~~lg~~~i~ 104 (289)
+..+++|.||||+||||+++.+++.++..++.
T Consensus 348 ~g~~i~l~GppG~GKTtl~~~ia~~l~~~~~~ 379 (784)
T PRK10787 348 KGPILCLVGPPGVGKTSLGQSIAKATGRKYVR 379 (784)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHhCCCEEE
Confidence 44579999999999999999999999877754
No 408
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=96.10 E-value=0.0079 Score=53.76 Aligned_cols=45 Identities=20% Similarity=0.358 Sum_probs=35.2
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhCCCee--ehHHHHHHHHHcCC
Q 022951 73 KHVQWVFLGCPGVGKGTYASRLSNLLGVPHI--ATGDLLDEIVSQGK 117 (289)
Q Consensus 73 ~~~~Ivl~GppGsGKSTlak~La~~lg~~~i--~~d~l~~~~l~~g~ 117 (289)
.|.=+++.||||||||.+++..|.+....+| ...+++.+|+-.|.
T Consensus 188 pprgvllygppg~gktml~kava~~t~a~firvvgsefvqkylgegp 234 (408)
T KOG0727|consen 188 PPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFVQKYLGEGP 234 (408)
T ss_pred CCcceEEeCCCCCcHHHHHHHHhhccchheeeeccHHHHHHHhccCc
Confidence 4455789999999999999999998765554 45677777776654
No 409
>PRK14490 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MobA; Provisional
Probab=96.10 E-value=0.0058 Score=57.82 Aligned_cols=27 Identities=30% Similarity=0.421 Sum_probs=24.7
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhC
Q 022951 73 KHVQWVFLGCPGVGKGTYASRLSNLLG 99 (289)
Q Consensus 73 ~~~~Ivl~GppGsGKSTlak~La~~lg 99 (289)
++..|.|+|++||||||+++.|...+.
T Consensus 4 ~~~~i~i~G~~gsGKTTl~~~l~~~l~ 30 (369)
T PRK14490 4 HPFEIAFCGYSGSGKTTLITALVRRLS 30 (369)
T ss_pred CCEEEEEEeCCCCCHHHHHHHHHHHHh
Confidence 578999999999999999999998875
No 410
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=96.09 E-value=0.0057 Score=49.49 Aligned_cols=22 Identities=32% Similarity=0.524 Sum_probs=19.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHH
Q 022951 75 VQWVFLGCPGVGKGTYASRLSN 96 (289)
Q Consensus 75 ~~Ivl~GppGsGKSTlak~La~ 96 (289)
.+|+|+|.+|+||||+.++|..
T Consensus 2 ~ki~iiG~~~vGKTsl~~~~~~ 23 (162)
T cd04138 2 YKLVVVGAGGVGKSALTIQLIQ 23 (162)
T ss_pred eEEEEECCCCCCHHHHHHHHHh
Confidence 4689999999999999999975
No 411
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=96.09 E-value=0.0055 Score=52.11 Aligned_cols=26 Identities=35% Similarity=0.507 Sum_probs=22.0
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHHh
Q 022951 73 KHVQWVFLGCPGVGKGTYASRLSNLL 98 (289)
Q Consensus 73 ~~~~Ivl~GppGsGKSTlak~La~~l 98 (289)
..-++.|+|+.||||||+.+.|+..+
T Consensus 17 ~Ge~~~i~G~nGsGKSTLl~~i~G~~ 42 (190)
T TIGR01166 17 RGEVLALLGANGAGKSTLLLHLNGLL 42 (190)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34578999999999999999998544
No 412
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=96.08 E-value=0.0054 Score=52.99 Aligned_cols=26 Identities=19% Similarity=0.144 Sum_probs=22.4
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHHh
Q 022951 73 KHVQWVFLGCPGVGKGTYASRLSNLL 98 (289)
Q Consensus 73 ~~~~Ivl~GppGsGKSTlak~La~~l 98 (289)
+.-++.|+|+.||||||+.+.|+..+
T Consensus 26 ~G~~~~i~G~nGsGKSTLl~~l~G~~ 51 (214)
T cd03292 26 AGEFVFLVGPSGAGKSTLLKLIYKEE 51 (214)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34578999999999999999998654
No 413
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=96.08 E-value=0.0055 Score=53.18 Aligned_cols=26 Identities=31% Similarity=0.282 Sum_probs=22.4
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHHh
Q 022951 73 KHVQWVFLGCPGVGKGTYASRLSNLL 98 (289)
Q Consensus 73 ~~~~Ivl~GppGsGKSTlak~La~~l 98 (289)
..-++.|+||.||||||+.+.|+..+
T Consensus 29 ~G~~~~l~G~nGsGKSTLl~~i~Gl~ 54 (218)
T cd03255 29 KGEFVAIVGPSGSGKSTLLNILGGLD 54 (218)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCc
Confidence 34578999999999999999998654
No 414
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=96.07 E-value=0.025 Score=52.66 Aligned_cols=28 Identities=29% Similarity=0.325 Sum_probs=24.6
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHHHhCCC
Q 022951 74 HVQWVFLGCPGVGKGTYASRLSNLLGVP 101 (289)
Q Consensus 74 ~~~Ivl~GppGsGKSTlak~La~~lg~~ 101 (289)
++.++|.||+|+||+|+|+.+++.+.+.
T Consensus 28 ~ha~Lf~G~~G~gk~~~a~~la~~l~c~ 55 (329)
T PRK08058 28 SHAYLFEGAKGTGKKATALWLAKSLFCL 55 (329)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHCCC
Confidence 5678999999999999999999987543
No 415
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=96.07 E-value=0.0061 Score=54.81 Aligned_cols=26 Identities=23% Similarity=0.227 Sum_probs=23.3
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHHHhC
Q 022951 74 HVQWVFLGCPGVGKGTYASRLSNLLG 99 (289)
Q Consensus 74 ~~~Ivl~GppGsGKSTlak~La~~lg 99 (289)
...|+|+|++||||||+.+.|.+.+.
T Consensus 127 ~~~ili~G~tGSGKTT~l~all~~i~ 152 (270)
T PF00437_consen 127 RGNILISGPTGSGKTTLLNALLEEIP 152 (270)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHHHCH
T ss_pred ceEEEEECCCccccchHHHHHhhhcc
Confidence 57899999999999999999988763
No 416
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=96.07 E-value=0.026 Score=55.84 Aligned_cols=26 Identities=27% Similarity=0.368 Sum_probs=23.6
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHHHhC
Q 022951 74 HVQWVFLGCPGVGKGTYASRLSNLLG 99 (289)
Q Consensus 74 ~~~Ivl~GppGsGKSTlak~La~~lg 99 (289)
++.++|+||+|+||||+|+.|++.+.
T Consensus 36 ~hayLf~Gp~G~GKTt~Ar~LAk~L~ 61 (535)
T PRK08451 36 AHAYLFSGLRGSGKTSSARIFARALV 61 (535)
T ss_pred CeeEEEECCCCCcHHHHHHHHHHHhc
Confidence 46789999999999999999999884
No 417
>PHA03133 thymidine kinase; Provisional
Probab=96.06 E-value=0.47 Score=44.58 Aligned_cols=27 Identities=33% Similarity=0.389 Sum_probs=23.6
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhC
Q 022951 73 KHVQWVFLGCPGVGKGTYASRLSNLLG 99 (289)
Q Consensus 73 ~~~~Ivl~GppGsGKSTlak~La~~lg 99 (289)
.-.+|.|.|+.|.||||+++.+...++
T Consensus 39 ~~~rvYlDG~~GvGKTTt~~~l~~a~~ 65 (368)
T PHA03133 39 ALLRIYVDGPHGLGKTTTAAALAAALG 65 (368)
T ss_pred eEEEEEEeCCCcCCHHHHHHHHHHhhC
Confidence 346889999999999999999988775
No 418
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=96.06 E-value=0.0056 Score=53.12 Aligned_cols=26 Identities=23% Similarity=0.363 Sum_probs=22.5
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHHh
Q 022951 73 KHVQWVFLGCPGVGKGTYASRLSNLL 98 (289)
Q Consensus 73 ~~~~Ivl~GppGsGKSTlak~La~~l 98 (289)
..-++.|+|++||||||+.+.|+..+
T Consensus 28 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 53 (216)
T TIGR00960 28 KGEMVFLVGHSGAGKSTFLKLILGIE 53 (216)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34678999999999999999998754
No 419
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=96.06 E-value=0.0052 Score=59.34 Aligned_cols=26 Identities=42% Similarity=0.581 Sum_probs=23.1
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHHHhC
Q 022951 74 HVQWVFLGCPGVGKGTYASRLSNLLG 99 (289)
Q Consensus 74 ~~~Ivl~GppGsGKSTlak~La~~lg 99 (289)
...|+|.||||+|||++|+.|+..++
T Consensus 194 ~~~iil~GppGtGKT~lA~~la~~l~ 219 (459)
T PRK11331 194 KKNIILQGPPGVGKTFVARRLAYLLT 219 (459)
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHhc
Confidence 35688899999999999999999874
No 420
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=96.05 E-value=0.027 Score=53.89 Aligned_cols=28 Identities=29% Similarity=0.424 Sum_probs=24.7
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHHHHh
Q 022951 71 EGKHVQWVFLGCPGVGKGTYASRLSNLL 98 (289)
Q Consensus 71 ~~~~~~Ivl~GppGsGKSTlak~La~~l 98 (289)
...|.+|.++|.-||||||.|-.||..|
T Consensus 97 ~~~P~vImmvGLQGsGKTTt~~KLA~~l 124 (451)
T COG0541 97 KKPPTVILMVGLQGSGKTTTAGKLAKYL 124 (451)
T ss_pred CCCCeEEEEEeccCCChHhHHHHHHHHH
Confidence 4567899999999999999999999877
No 421
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=96.05 E-value=0.0069 Score=58.41 Aligned_cols=27 Identities=26% Similarity=0.374 Sum_probs=23.2
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHHHh
Q 022951 72 GKHVQWVFLGCPGVGKGTYASRLSNLL 98 (289)
Q Consensus 72 ~~~~~Ivl~GppGsGKSTlak~La~~l 98 (289)
.++.+|+++|++||||||++..||..+
T Consensus 97 ~~p~vi~~vG~~GsGKTTtaakLA~~l 123 (428)
T TIGR00959 97 KPPTVILMVGLQGSGKTTTCGKLAYYL 123 (428)
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHHHH
Confidence 357789999999999999988888764
No 422
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.04 E-value=0.052 Score=54.81 Aligned_cols=28 Identities=29% Similarity=0.443 Sum_probs=24.7
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHHHhCCC
Q 022951 74 HVQWVFLGCPGVGKGTYASRLSNLLGVP 101 (289)
Q Consensus 74 ~~~Ivl~GppGsGKSTlak~La~~lg~~ 101 (289)
++.++|+||+|+||||+|+.+|+.+.+.
T Consensus 39 ~hayLf~Gp~G~GKtt~A~~lAk~l~c~ 66 (614)
T PRK14971 39 AHAYLFCGPRGVGKTTCARIFAKTINCQ 66 (614)
T ss_pred CeeEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 4668999999999999999999998653
No 423
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=96.04 E-value=0.0073 Score=52.43 Aligned_cols=33 Identities=30% Similarity=0.290 Sum_probs=26.3
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHHh-----CCCeeeh
Q 022951 73 KHVQWVFLGCPGVGKGTYASRLSNLL-----GVPHIAT 105 (289)
Q Consensus 73 ~~~~Ivl~GppGsGKSTlak~La~~l-----g~~~i~~ 105 (289)
+..++.|.|+|||||||+|..++... .+.+++.
T Consensus 18 ~g~i~~i~G~~GsGKT~l~~~~a~~~~~~g~~v~yi~~ 55 (218)
T cd01394 18 RGTVTQVYGPPGTGKTNIAIQLAVETAGQGKKVAYIDT 55 (218)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEC
Confidence 35678999999999999999998764 2446655
No 424
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=96.04 E-value=0.0068 Score=42.37 Aligned_cols=23 Identities=22% Similarity=0.270 Sum_probs=19.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHH
Q 022951 75 VQWVFLGCPGVGKGTYASRLSNL 97 (289)
Q Consensus 75 ~~Ivl~GppGsGKSTlak~La~~ 97 (289)
...+|+|+.||||||+..++.-.
T Consensus 24 ~~tli~G~nGsGKSTllDAi~~~ 46 (62)
T PF13555_consen 24 DVTLITGPNGSGKSTLLDAIQTV 46 (62)
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 36899999999999999887543
No 425
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=96.03 E-value=0.035 Score=56.45 Aligned_cols=34 Identities=24% Similarity=0.406 Sum_probs=29.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCeeeh--HHHH
Q 022951 76 QWVFLGCPGVGKGTYASRLSNLLGVPHIAT--GDLL 109 (289)
Q Consensus 76 ~Ivl~GppGsGKSTlak~La~~lg~~~i~~--d~l~ 109 (289)
=|++.||||+|||-+||++|-++.+.++++ -+++
T Consensus 707 GILLYGPPGTGKTLlAKAVATEcsL~FlSVKGPELL 742 (953)
T KOG0736|consen 707 GILLYGPPGTGKTLLAKAVATECSLNFLSVKGPELL 742 (953)
T ss_pred eeEEECCCCCchHHHHHHHHhhceeeEEeecCHHHH
Confidence 489999999999999999999998888874 4555
No 426
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=96.03 E-value=0.0049 Score=57.79 Aligned_cols=27 Identities=22% Similarity=0.333 Sum_probs=23.6
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhC
Q 022951 73 KHVQWVFLGCPGVGKGTYASRLSNLLG 99 (289)
Q Consensus 73 ~~~~Ivl~GppGsGKSTlak~La~~lg 99 (289)
.+..|+|+|++||||||+.+.|...+.
T Consensus 161 ~~~nilI~G~tGSGKTTll~aLl~~i~ 187 (344)
T PRK13851 161 GRLTMLLCGPTGSGKTTMSKTLISAIP 187 (344)
T ss_pred cCCeEEEECCCCccHHHHHHHHHcccC
Confidence 346799999999999999999988764
No 427
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=96.02 E-value=0.006 Score=49.71 Aligned_cols=22 Identities=27% Similarity=0.407 Sum_probs=19.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHHH
Q 022951 76 QWVFLGCPGVGKGTYASRLSNL 97 (289)
Q Consensus 76 ~Ivl~GppGsGKSTlak~La~~ 97 (289)
+|+|+|++|+||||+..+|...
T Consensus 2 ki~~vG~~~vGKTsli~~l~~~ 23 (168)
T cd04119 2 KVISMGNSGVGKSCIIKRYCEG 23 (168)
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 6899999999999999999754
No 428
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=96.01 E-value=0.0063 Score=52.51 Aligned_cols=26 Identities=35% Similarity=0.385 Sum_probs=22.4
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHHh
Q 022951 73 KHVQWVFLGCPGVGKGTYASRLSNLL 98 (289)
Q Consensus 73 ~~~~Ivl~GppGsGKSTlak~La~~l 98 (289)
..-++.|+|+.||||||+.+.|+..+
T Consensus 26 ~G~~~~l~G~nGsGKSTLl~~l~G~~ 51 (211)
T cd03225 26 KGEFVLIVGPNGSGKSTLLRLLNGLL 51 (211)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 34678999999999999999998654
No 429
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.00 E-value=0.0058 Score=52.81 Aligned_cols=23 Identities=35% Similarity=0.455 Sum_probs=20.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHh
Q 022951 76 QWVFLGCPGVGKGTYASRLSNLL 98 (289)
Q Consensus 76 ~Ivl~GppGsGKSTlak~La~~l 98 (289)
++.|.|++||||||+.+.|+..+
T Consensus 27 ~~~i~G~nGsGKSTLl~~l~Gl~ 49 (211)
T cd03264 27 MYGLLGPNGAGKTTLMRILATLT 49 (211)
T ss_pred cEEEECCCCCCHHHHHHHHhCCC
Confidence 78999999999999999998644
No 430
>PF01443 Viral_helicase1: Viral (Superfamily 1) RNA helicase; InterPro: IPR000606 This entry includes RNA and DNA helicases. Some of the members are found in positive-strand single stranded RNA viruses. The helicase has multiple roles at different stages of viral RNA replication, as dissected by mutational analysis [].; GO: 0004386 helicase activity
Probab=96.00 E-value=0.0047 Score=53.86 Aligned_cols=22 Identities=36% Similarity=0.468 Sum_probs=20.1
Q ss_pred EEEEcCCCCCHHHHHHHHHHHh
Q 022951 77 WVFLGCPGVGKGTYASRLSNLL 98 (289)
Q Consensus 77 Ivl~GppGsGKSTlak~La~~l 98 (289)
|+|.|+|||||||..+.+.+..
T Consensus 1 ~vv~G~pGsGKSt~i~~~~~~~ 22 (234)
T PF01443_consen 1 IVVHGVPGSGKSTLIKKLLKDR 22 (234)
T ss_pred CEEEcCCCCCHHHHHHHHHHhc
Confidence 5899999999999999999884
No 431
>PRK08939 primosomal protein DnaI; Reviewed
Probab=96.00 E-value=0.026 Score=52.13 Aligned_cols=39 Identities=23% Similarity=0.319 Sum_probs=30.8
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHHHh---C--CCeeehHHHHHHH
Q 022951 74 HVQWVFLGCPGVGKGTYASRLSNLL---G--VPHIATGDLLDEI 112 (289)
Q Consensus 74 ~~~Ivl~GppGsGKSTlak~La~~l---g--~~~i~~d~l~~~~ 112 (289)
..-++|.|++|+|||.++..|+..+ | +.++...+++.++
T Consensus 156 ~~gl~L~G~~G~GKThLa~Aia~~l~~~g~~v~~~~~~~l~~~l 199 (306)
T PRK08939 156 VKGLYLYGDFGVGKSYLLAAIANELAKKGVSSTLLHFPEFIREL 199 (306)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEEHHHHHHHH
Confidence 3468999999999999999999887 4 4566777777443
No 432
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=95.98 E-value=0.0083 Score=51.68 Aligned_cols=34 Identities=26% Similarity=0.195 Sum_probs=26.9
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHHh-----CCCeeehH
Q 022951 73 KHVQWVFLGCPGVGKGTYASRLSNLL-----GVPHIATG 106 (289)
Q Consensus 73 ~~~~Ivl~GppGsGKSTlak~La~~l-----g~~~i~~d 106 (289)
+..++.|+|+||||||++|..++... .+.|+++.
T Consensus 11 ~g~i~~i~G~~GsGKT~l~~~~~~~~~~~g~~v~yi~~e 49 (209)
T TIGR02237 11 RGTITQIYGPPGSGKTNICMILAVNAARQGKKVVYIDTE 49 (209)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECC
Confidence 35688999999999999999988643 35667664
No 433
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=95.98 E-value=0.0066 Score=52.78 Aligned_cols=26 Identities=31% Similarity=0.378 Sum_probs=22.4
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHHh
Q 022951 73 KHVQWVFLGCPGVGKGTYASRLSNLL 98 (289)
Q Consensus 73 ~~~~Ivl~GppGsGKSTlak~La~~l 98 (289)
+.-++.|+||.||||||+.+.|+..+
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 50 (222)
T cd03224 25 EGEIVALLGRNGAGKTTLLKTIMGLL 50 (222)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCC
Confidence 45688999999999999999998654
No 434
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=95.97 E-value=0.0066 Score=52.52 Aligned_cols=26 Identities=31% Similarity=0.273 Sum_probs=22.3
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHHh
Q 022951 73 KHVQWVFLGCPGVGKGTYASRLSNLL 98 (289)
Q Consensus 73 ~~~~Ivl~GppGsGKSTlak~La~~l 98 (289)
..-++.|+|+.||||||+.+.|+..+
T Consensus 27 ~G~~~~l~G~nGsGKSTLl~~i~Gl~ 52 (214)
T TIGR02673 27 KGEFLFLTGPSGAGKTTLLKLLYGAL 52 (214)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34578999999999999999998654
No 435
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.96 E-value=0.0064 Score=51.01 Aligned_cols=26 Identities=35% Similarity=0.402 Sum_probs=22.2
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHHh
Q 022951 73 KHVQWVFLGCPGVGKGTYASRLSNLL 98 (289)
Q Consensus 73 ~~~~Ivl~GppGsGKSTlak~La~~l 98 (289)
+.-++.|+|+.||||||+.+.|+..+
T Consensus 25 ~Ge~~~i~G~nGsGKStLl~~l~G~~ 50 (173)
T cd03230 25 KGEIYGLLGPNGAGKTTLIKIILGLL 50 (173)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 34578999999999999999998654
No 436
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=95.96 E-value=0.0068 Score=52.68 Aligned_cols=26 Identities=35% Similarity=0.373 Sum_probs=22.3
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHHh
Q 022951 73 KHVQWVFLGCPGVGKGTYASRLSNLL 98 (289)
Q Consensus 73 ~~~~Ivl~GppGsGKSTlak~La~~l 98 (289)
+.-++.|+||+||||||+.+.|+..+
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (220)
T cd03263 27 KGEIFGLLGHNGAGKTTTLKMLTGEL 52 (220)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 34578999999999999999998654
No 437
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.96 E-value=0.0066 Score=53.47 Aligned_cols=26 Identities=27% Similarity=0.342 Sum_probs=22.4
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHHh
Q 022951 73 KHVQWVFLGCPGVGKGTYASRLSNLL 98 (289)
Q Consensus 73 ~~~~Ivl~GppGsGKSTlak~La~~l 98 (289)
+.-++.|+|+.||||||+.+.|+..+
T Consensus 26 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 51 (241)
T cd03256 26 PGEFVALIGPSGAGKSTLLRCLNGLV 51 (241)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 44678999999999999999998654
No 438
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=95.96 E-value=0.0069 Score=56.27 Aligned_cols=25 Identities=28% Similarity=0.368 Sum_probs=22.3
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHHHh
Q 022951 74 HVQWVFLGCPGVGKGTYASRLSNLL 98 (289)
Q Consensus 74 ~~~Ivl~GppGsGKSTlak~La~~l 98 (289)
+..|+|+|++||||||+.+.|....
T Consensus 144 ~~nilI~G~tGSGKTTll~aL~~~i 168 (323)
T PRK13833 144 RLNIVISGGTGSGKTTLANAVIAEI 168 (323)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHH
Confidence 4578999999999999999998865
No 439
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=95.96 E-value=0.0075 Score=44.32 Aligned_cols=30 Identities=37% Similarity=0.409 Sum_probs=24.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHh---CCCeeeh
Q 022951 76 QWVFLGCPGVGKGTYASRLSNLL---GVPHIAT 105 (289)
Q Consensus 76 ~Ivl~GppGsGKSTlak~La~~l---g~~~i~~ 105 (289)
++++.|..|+||||++..|+..+ |...+-.
T Consensus 1 ~~~~~g~~G~Gktt~~~~l~~~l~~~g~~v~~~ 33 (99)
T cd01983 1 VIVVTGKGGVGKTTLAANLAAALAKRGKRVLLI 33 (99)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEE
Confidence 36889999999999999999887 4554444
No 440
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=95.96 E-value=0.0062 Score=53.51 Aligned_cols=26 Identities=27% Similarity=0.299 Sum_probs=22.3
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHHh
Q 022951 73 KHVQWVFLGCPGVGKGTYASRLSNLL 98 (289)
Q Consensus 73 ~~~~Ivl~GppGsGKSTlak~La~~l 98 (289)
+.-++.|.|+.||||||+.+.|+..+
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 50 (236)
T cd03219 25 PGEIHGLIGPNGAGKTTLFNLISGFL 50 (236)
T ss_pred CCcEEEEECCCCCCHHHHHHHHcCCC
Confidence 44678999999999999999998644
No 441
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=95.95 E-value=0.0064 Score=52.24 Aligned_cols=26 Identities=27% Similarity=0.362 Sum_probs=22.4
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHHh
Q 022951 73 KHVQWVFLGCPGVGKGTYASRLSNLL 98 (289)
Q Consensus 73 ~~~~Ivl~GppGsGKSTlak~La~~l 98 (289)
+.-++.|+|++||||||+.+.|+..+
T Consensus 23 ~Ge~~~i~G~nGsGKSTLl~~l~G~~ 48 (206)
T TIGR03608 23 KGKMYAIIGESGSGKSTLLNIIGLLE 48 (206)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 34578999999999999999998654
No 442
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.95 E-value=0.0068 Score=53.33 Aligned_cols=26 Identities=27% Similarity=0.379 Sum_probs=22.3
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHHh
Q 022951 73 KHVQWVFLGCPGVGKGTYASRLSNLL 98 (289)
Q Consensus 73 ~~~~Ivl~GppGsGKSTlak~La~~l 98 (289)
..-++.|+||.||||||+.+.|+..+
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~l~G~~ 50 (235)
T cd03261 25 RGEILAIIGPSGSGKSTLLRLIVGLL 50 (235)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34578999999999999999998654
No 443
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.95 E-value=0.007 Score=52.25 Aligned_cols=26 Identities=27% Similarity=0.346 Sum_probs=22.3
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHHh
Q 022951 73 KHVQWVFLGCPGVGKGTYASRLSNLL 98 (289)
Q Consensus 73 ~~~~Ivl~GppGsGKSTlak~La~~l 98 (289)
..-++.|+|+.||||||+.+.|+..+
T Consensus 25 ~G~~~~i~G~nGsGKSTLl~~l~G~~ 50 (210)
T cd03269 25 KGEIFGLLGPNGAGKTTTIRMILGII 50 (210)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 34578999999999999999998654
No 444
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=95.95 E-value=0.0066 Score=49.40 Aligned_cols=22 Identities=32% Similarity=0.676 Sum_probs=19.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHH
Q 022951 75 VQWVFLGCPGVGKGTYASRLSN 96 (289)
Q Consensus 75 ~~Ivl~GppGsGKSTlak~La~ 96 (289)
.+|+|+|+|||||||+.++|..
T Consensus 1 ~kv~v~G~~~~GKTtli~~l~~ 22 (164)
T smart00175 1 FKIILIGDSGVGKSSLLSRFTD 22 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 3689999999999999999864
No 445
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=95.94 E-value=0.007 Score=52.27 Aligned_cols=26 Identities=31% Similarity=0.303 Sum_probs=22.4
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHHh
Q 022951 73 KHVQWVFLGCPGVGKGTYASRLSNLL 98 (289)
Q Consensus 73 ~~~~Ivl~GppGsGKSTlak~La~~l 98 (289)
+.-++.|+|+.||||||+.+.|+..+
T Consensus 25 ~G~~~~l~G~nGsGKSTLl~~l~G~~ 50 (213)
T cd03262 25 KGEVVVIIGPSGSGKSTLLRCINLLE 50 (213)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34678999999999999999998654
No 446
>PRK04328 hypothetical protein; Provisional
Probab=95.93 E-value=0.03 Score=50.06 Aligned_cols=33 Identities=18% Similarity=0.181 Sum_probs=24.5
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHHh-----CCCeeeh
Q 022951 73 KHVQWVFLGCPGVGKGTYASRLSNLL-----GVPHIAT 105 (289)
Q Consensus 73 ~~~~Ivl~GppGsGKSTlak~La~~l-----g~~~i~~ 105 (289)
+...++|.|+||||||++|.+++... .+.|+++
T Consensus 22 ~gs~ili~G~pGsGKT~l~~~fl~~~~~~ge~~lyis~ 59 (249)
T PRK04328 22 ERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGVYVAL 59 (249)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEEe
Confidence 34678999999999999998765442 2456665
No 447
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=95.93 E-value=0.0068 Score=49.43 Aligned_cols=22 Identities=23% Similarity=0.617 Sum_probs=19.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHH
Q 022951 75 VQWVFLGCPGVGKGTYASRLSN 96 (289)
Q Consensus 75 ~~Ivl~GppGsGKSTlak~La~ 96 (289)
++|+|+|++|+||||+.++|..
T Consensus 1 ~ki~v~G~~~vGKTsli~~l~~ 22 (161)
T cd04113 1 FKFIIIGSSGTGKSCLLHRFVE 22 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 3689999999999999999864
No 448
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.93 E-value=0.0079 Score=57.30 Aligned_cols=26 Identities=23% Similarity=0.348 Sum_probs=23.2
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHHh
Q 022951 73 KHVQWVFLGCPGVGKGTYASRLSNLL 98 (289)
Q Consensus 73 ~~~~Ivl~GppGsGKSTlak~La~~l 98 (289)
++.+|+|+||.||||||++..||..+
T Consensus 240 ~~~vI~LVGptGvGKTTTiaKLA~~L 265 (436)
T PRK11889 240 EVQTIALIGPTGVGKTTTLAKMAWQF 265 (436)
T ss_pred CCcEEEEECCCCCcHHHHHHHHHHHH
Confidence 45789999999999999999998766
No 449
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=95.93 E-value=0.0075 Score=47.84 Aligned_cols=23 Identities=39% Similarity=0.583 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHH
Q 022951 75 VQWVFLGCPGVGKGTYASRLSNL 97 (289)
Q Consensus 75 ~~Ivl~GppGsGKSTlak~La~~ 97 (289)
.+|+|+|.+||||||+...|...
T Consensus 2 ~ki~~~G~~~~GKstl~~~l~~~ 24 (161)
T TIGR00231 2 IKIVIVGDPNVGKSTLLNRLLGN 24 (161)
T ss_pred eEEEEECCCCCCHHHHHHHHhCC
Confidence 57999999999999999988754
No 450
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=95.93 E-value=0.0088 Score=61.61 Aligned_cols=34 Identities=32% Similarity=0.582 Sum_probs=27.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCe--eehHHHH
Q 022951 76 QWVFLGCPGVGKGTYASRLSNLLGVPH--IATGDLL 109 (289)
Q Consensus 76 ~Ivl~GppGsGKSTlak~La~~lg~~~--i~~d~l~ 109 (289)
.++|+||+|+|||++|+.||+.++..+ +++.++.
T Consensus 486 ~~lf~Gp~GvGKT~lA~~la~~l~~~~~~~d~se~~ 521 (731)
T TIGR02639 486 SFLFTGPTGVGKTELAKQLAEALGVHLERFDMSEYM 521 (731)
T ss_pred eEEEECCCCccHHHHHHHHHHHhcCCeEEEeCchhh
Confidence 578999999999999999999997654 4554543
No 451
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=95.92 E-value=0.0076 Score=52.69 Aligned_cols=26 Identities=31% Similarity=0.325 Sum_probs=22.8
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHHh
Q 022951 73 KHVQWVFLGCPGVGKGTYASRLSNLL 98 (289)
Q Consensus 73 ~~~~Ivl~GppGsGKSTlak~La~~l 98 (289)
+.-++.|+|+.||||||+.+.|+..+
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~i~G~~ 50 (227)
T cd03260 25 KGEITALIGPSGCGKSTLLRLLNRLN 50 (227)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 34678999999999999999998765
No 452
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=95.92 E-value=0.0066 Score=52.42 Aligned_cols=22 Identities=18% Similarity=0.229 Sum_probs=20.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHH
Q 022951 75 VQWVFLGCPGVGKGTYASRLSN 96 (289)
Q Consensus 75 ~~Ivl~GppGsGKSTlak~La~ 96 (289)
.+++|+||.||||||+.+.|+.
T Consensus 26 ~~~~ltGpNg~GKSTllr~i~~ 47 (199)
T cd03283 26 NGILITGSNMSGKSTFLRTIGV 47 (199)
T ss_pred cEEEEECCCCCChHHHHHHHHH
Confidence 6788999999999999999975
No 453
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=95.92 E-value=0.007 Score=53.42 Aligned_cols=26 Identities=23% Similarity=0.313 Sum_probs=22.3
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHHh
Q 022951 73 KHVQWVFLGCPGVGKGTYASRLSNLL 98 (289)
Q Consensus 73 ~~~~Ivl~GppGsGKSTlak~La~~l 98 (289)
..-++.|+||.||||||+.+.|+..+
T Consensus 27 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 52 (243)
T TIGR02315 27 PGEFVAIIGPSGAGKSTLLRCINRLV 52 (243)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 34578999999999999999998654
No 454
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=95.92 E-value=0.007 Score=52.09 Aligned_cols=26 Identities=31% Similarity=0.342 Sum_probs=22.3
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHHh
Q 022951 73 KHVQWVFLGCPGVGKGTYASRLSNLL 98 (289)
Q Consensus 73 ~~~~Ivl~GppGsGKSTlak~La~~l 98 (289)
..-++.|+||.||||||+.+.|+..+
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 50 (205)
T cd03226 25 AGEIIALTGKNGAGKTTLAKILAGLI 50 (205)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34578999999999999999998654
No 455
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.92 E-value=0.0076 Score=50.81 Aligned_cols=26 Identities=27% Similarity=0.284 Sum_probs=22.3
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHHh
Q 022951 73 KHVQWVFLGCPGVGKGTYASRLSNLL 98 (289)
Q Consensus 73 ~~~~Ivl~GppGsGKSTlak~La~~l 98 (289)
+.-++.|.|+.||||||+.+.|+..+
T Consensus 25 ~G~~~~i~G~nGsGKSTLl~~l~G~~ 50 (178)
T cd03229 25 AGEIVALLGPSGSGKSTLLRCIAGLE 50 (178)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 44678999999999999999998544
No 456
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=95.92 E-value=0.0071 Score=54.32 Aligned_cols=36 Identities=33% Similarity=0.336 Sum_probs=27.7
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHHh----CCCeeehHHH
Q 022951 73 KHVQWVFLGCPGVGKGTYASRLSNLL----GVPHIATGDL 108 (289)
Q Consensus 73 ~~~~Ivl~GppGsGKSTlak~La~~l----g~~~i~~d~l 108 (289)
+..+++|.||.||||||+.|.|+.-+ |-.+++..++
T Consensus 27 ~G~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g~~i 66 (258)
T COG1120 27 KGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDI 66 (258)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCCch
Confidence 45688999999999999999999865 3455554333
No 457
>PRK05642 DNA replication initiation factor; Validated
Probab=95.92 E-value=0.01 Score=52.58 Aligned_cols=35 Identities=17% Similarity=0.191 Sum_probs=28.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHh-----CCCeeehHHHH
Q 022951 75 VQWVFLGCPGVGKGTYASRLSNLL-----GVPHIATGDLL 109 (289)
Q Consensus 75 ~~Ivl~GppGsGKSTlak~La~~l-----g~~~i~~d~l~ 109 (289)
..++|+|++|+|||.+++.++..+ .+.|++.+++.
T Consensus 46 ~~l~l~G~~G~GKTHLl~a~~~~~~~~~~~v~y~~~~~~~ 85 (234)
T PRK05642 46 SLIYLWGKDGVGRSHLLQAACLRFEQRGEPAVYLPLAELL 85 (234)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEeeHHHHH
Confidence 457899999999999999987643 46778887765
No 458
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=95.91 E-value=0.0075 Score=55.49 Aligned_cols=25 Identities=28% Similarity=0.365 Sum_probs=22.3
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHHHh
Q 022951 74 HVQWVFLGCPGVGKGTYASRLSNLL 98 (289)
Q Consensus 74 ~~~Ivl~GppGsGKSTlak~La~~l 98 (289)
...|+|+|++||||||+++.|...+
T Consensus 132 ~~~ilI~G~tGSGKTTll~al~~~i 156 (299)
T TIGR02782 132 RKNILVVGGTGSGKTTLANALLAEI 156 (299)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHh
Confidence 4578999999999999999998876
No 459
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=95.91 E-value=0.007 Score=49.16 Aligned_cols=21 Identities=24% Similarity=0.468 Sum_probs=19.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHH
Q 022951 76 QWVFLGCPGVGKGTYASRLSN 96 (289)
Q Consensus 76 ~Ivl~GppGsGKSTlak~La~ 96 (289)
+|+++|++||||||+.++|..
T Consensus 2 ki~~~G~~~~GKTsl~~~l~~ 22 (164)
T cd04139 2 KVIVVGAGGVGKSALTLQFMY 22 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 689999999999999998874
No 460
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.91 E-value=0.0067 Score=52.81 Aligned_cols=26 Identities=23% Similarity=0.277 Sum_probs=22.2
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHHh
Q 022951 73 KHVQWVFLGCPGVGKGTYASRLSNLL 98 (289)
Q Consensus 73 ~~~~Ivl~GppGsGKSTlak~La~~l 98 (289)
+.-++.|+|+.||||||+.+.|+..+
T Consensus 29 ~G~~~~i~G~nGsGKSTLl~~l~Gl~ 54 (220)
T cd03293 29 EGEFVALVGPSGCGKSTLLRIIAGLE 54 (220)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 34578999999999999999998654
No 461
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=95.91 E-value=0.0075 Score=52.12 Aligned_cols=26 Identities=31% Similarity=0.304 Sum_probs=22.4
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHHh
Q 022951 73 KHVQWVFLGCPGVGKGTYASRLSNLL 98 (289)
Q Consensus 73 ~~~~Ivl~GppGsGKSTlak~La~~l 98 (289)
+.-++.|.|+.||||||+.+.|+..+
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~l~G~~ 50 (213)
T cd03301 25 DGEFVVLLGPSGCGKTTTLRMIAGLE 50 (213)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 34578999999999999999998654
No 462
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=95.90 E-value=0.0078 Score=48.99 Aligned_cols=22 Identities=32% Similarity=0.516 Sum_probs=19.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHHH
Q 022951 75 VQWVFLGCPGVGKGTYASRLSN 96 (289)
Q Consensus 75 ~~Ivl~GppGsGKSTlak~La~ 96 (289)
.+|+|+|.+|+||||++.++..
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~ 23 (163)
T cd04136 2 YKVVVLGSGGVGKSALTVQFVQ 23 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHh
Confidence 4789999999999999998874
No 463
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=95.90 E-value=0.0075 Score=52.43 Aligned_cols=26 Identities=31% Similarity=0.321 Sum_probs=22.4
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHHh
Q 022951 73 KHVQWVFLGCPGVGKGTYASRLSNLL 98 (289)
Q Consensus 73 ~~~~Ivl~GppGsGKSTlak~La~~l 98 (289)
+.-++.|+||.||||||+.+.|+..+
T Consensus 30 ~G~~~~i~G~nGsGKSTLl~~i~G~~ 55 (221)
T TIGR02211 30 KGEIVAIVGSSGSGKSTLLHLLGGLD 55 (221)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 44578999999999999999998654
No 464
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=95.89 E-value=0.0068 Score=52.46 Aligned_cols=26 Identities=27% Similarity=0.323 Sum_probs=22.3
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHHh
Q 022951 73 KHVQWVFLGCPGVGKGTYASRLSNLL 98 (289)
Q Consensus 73 ~~~~Ivl~GppGsGKSTlak~La~~l 98 (289)
+.-++.|+|+.||||||+.+.|+..+
T Consensus 24 ~Ge~~~l~G~nGsGKSTLl~~l~G~~ 49 (213)
T cd03235 24 PGEFLAIVGPNGAGKSTLLKAILGLL 49 (213)
T ss_pred CCCEEEEECCCCCCHHHHHHHHcCCC
Confidence 34578999999999999999998654
No 465
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=95.89 E-value=0.011 Score=55.25 Aligned_cols=31 Identities=35% Similarity=0.579 Sum_probs=26.1
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHHHhC--CCeee
Q 022951 74 HVQWVFLGCPGVGKGTYASRLSNLLG--VPHIA 104 (289)
Q Consensus 74 ~~~Ivl~GppGsGKSTlak~La~~lg--~~~i~ 104 (289)
..-|+|.||||+|||.+|-.+|+.|| .++.+
T Consensus 65 GrgiLi~GppgTGKTAlA~gIa~eLG~dvPF~~ 97 (450)
T COG1224 65 GRGILIVGPPGTGKTALAMGIARELGEDVPFVA 97 (450)
T ss_pred ccEEEEECCCCCcHHHHHHHHHHHhCCCCCcee
Confidence 35689999999999999999999997 44443
No 466
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.89 E-value=0.0086 Score=57.05 Aligned_cols=26 Identities=31% Similarity=0.569 Sum_probs=23.3
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHHh
Q 022951 73 KHVQWVFLGCPGVGKGTYASRLSNLL 98 (289)
Q Consensus 73 ~~~~Ivl~GppGsGKSTlak~La~~l 98 (289)
.+.+|+|+||.|+||||.+..||..+
T Consensus 173 ~~~vi~lvGptGvGKTTT~aKLA~~~ 198 (388)
T PRK12723 173 KKRVFILVGPTGVGKTTTIAKLAAIY 198 (388)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 46789999999999999999999876
No 467
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.88 E-value=0.0076 Score=52.90 Aligned_cols=26 Identities=27% Similarity=0.365 Sum_probs=22.7
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHHh
Q 022951 73 KHVQWVFLGCPGVGKGTYASRLSNLL 98 (289)
Q Consensus 73 ~~~~Ivl~GppGsGKSTlak~La~~l 98 (289)
+.-++.|+|+.||||||+.+.|+..+
T Consensus 30 ~Ge~~~l~G~nGsGKSTLl~~l~G~~ 55 (233)
T cd03258 30 KGEIFGIIGRSGAGKSTLIRCINGLE 55 (233)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 44678999999999999999998765
No 468
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.88 E-value=0.0077 Score=52.09 Aligned_cols=26 Identities=27% Similarity=0.290 Sum_probs=22.3
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHHh
Q 022951 73 KHVQWVFLGCPGVGKGTYASRLSNLL 98 (289)
Q Consensus 73 ~~~~Ivl~GppGsGKSTlak~La~~l 98 (289)
..-++.|+|+.||||||+.+.|+..+
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~l~G~~ 50 (213)
T cd03259 25 PGEFLALLGPSGCGKTTLLRLIAGLE 50 (213)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 34578999999999999999998654
No 469
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=95.87 E-value=0.0072 Score=61.33 Aligned_cols=31 Identities=26% Similarity=0.410 Sum_probs=27.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhCCCeeeh
Q 022951 75 VQWVFLGCPGVGKGTYASRLSNLLGVPHIAT 105 (289)
Q Consensus 75 ~~Ivl~GppGsGKSTlak~La~~lg~~~i~~ 105 (289)
.-|+|.||||+||||+++.|+..++.+++..
T Consensus 186 ~gill~G~~G~GKt~~~~~~a~~~~~~f~~i 216 (644)
T PRK10733 186 KGVLMVGPPGTGKTLLAKAIAGEAKVPFFTI 216 (644)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHcCCCEEEE
Confidence 3489999999999999999999999877653
No 470
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=95.87 E-value=0.0065 Score=49.07 Aligned_cols=21 Identities=33% Similarity=0.542 Sum_probs=18.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHH
Q 022951 76 QWVFLGCPGVGKGTYASRLSN 96 (289)
Q Consensus 76 ~Ivl~GppGsGKSTlak~La~ 96 (289)
+|+|+|++||||||+..+|..
T Consensus 1 ki~i~G~~~~GKTsli~~l~~ 21 (160)
T cd00876 1 KVVVLGAGGVGKSAITIQFVK 21 (160)
T ss_pred CEEEECCCCCCHHHHHHHHHh
Confidence 479999999999999999864
No 471
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.86 E-value=0.0078 Score=53.14 Aligned_cols=26 Identities=27% Similarity=0.275 Sum_probs=22.4
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHHh
Q 022951 73 KHVQWVFLGCPGVGKGTYASRLSNLL 98 (289)
Q Consensus 73 ~~~~Ivl~GppGsGKSTlak~La~~l 98 (289)
+.-++.|+|+.||||||+.+.|+..+
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (239)
T cd03296 27 SGELVALLGPSGSGKTTLLRLIAGLE 52 (239)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34678999999999999999998654
No 472
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=95.85 E-value=0.0079 Score=52.89 Aligned_cols=26 Identities=27% Similarity=0.327 Sum_probs=22.3
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHHh
Q 022951 73 KHVQWVFLGCPGVGKGTYASRLSNLL 98 (289)
Q Consensus 73 ~~~~Ivl~GppGsGKSTlak~La~~l 98 (289)
..-+++|+|+.||||||+.+.|+..+
T Consensus 34 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 59 (233)
T PRK11629 34 EGEMMAIVGSSGSGKSTLLHLLGGLD 59 (233)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 34578999999999999999998654
No 473
>COG0802 Predicted ATPase or kinase [General function prediction only]
Probab=95.85 E-value=0.011 Score=48.66 Aligned_cols=28 Identities=29% Similarity=0.300 Sum_probs=25.3
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhCC
Q 022951 73 KHVQWVFLGCPGVGKGTYASRLSNLLGV 100 (289)
Q Consensus 73 ~~~~Ivl~GppGsGKSTlak~La~~lg~ 100 (289)
...+|++.|.-||||||++|.|++.+|.
T Consensus 24 ~g~Vv~L~GdLGAGKTtf~rgi~~~Lg~ 51 (149)
T COG0802 24 AGDVVLLSGDLGAGKTTLVRGIAKGLGV 51 (149)
T ss_pred CCCEEEEEcCCcCChHHHHHHHHHHcCC
Confidence 3568999999999999999999999984
No 474
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=95.85 E-value=0.0081 Score=50.95 Aligned_cols=24 Identities=29% Similarity=0.270 Sum_probs=20.5
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHH
Q 022951 73 KHVQWVFLGCPGVGKGTYASRLSN 96 (289)
Q Consensus 73 ~~~~Ivl~GppGsGKSTlak~La~ 96 (289)
+.-+++|.||.||||||+.+.+..
T Consensus 20 ~G~~~~l~G~nG~GKSTLl~~il~ 43 (176)
T cd03238 20 LNVLVVVTGVSGSGKSTLVNEGLY 43 (176)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhh
Confidence 446789999999999999998853
No 475
>PRK14493 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MoaE; Provisional
Probab=95.84 E-value=0.0088 Score=54.34 Aligned_cols=24 Identities=29% Similarity=0.378 Sum_probs=22.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHh
Q 022951 75 VQWVFLGCPGVGKGTYASRLSNLL 98 (289)
Q Consensus 75 ~~Ivl~GppGsGKSTlak~La~~l 98 (289)
.+|.|+|++||||||++..|+..|
T Consensus 2 ~~i~i~G~~gSGKTTLi~~Li~~L 25 (274)
T PRK14493 2 KVLSIVGYKATGKTTLVERLVDRL 25 (274)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHH
Confidence 468899999999999999999987
No 476
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=95.84 E-value=0.01 Score=58.34 Aligned_cols=28 Identities=36% Similarity=0.492 Sum_probs=25.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhCCCe
Q 022951 75 VQWVFLGCPGVGKGTYASRLSNLLGVPH 102 (289)
Q Consensus 75 ~~Ivl~GppGsGKSTlak~La~~lg~~~ 102 (289)
+-.+|+||-|+||||+|+.+|+.+++..
T Consensus 39 hAYlfsG~RGvGKTt~Ari~AkalNC~~ 66 (515)
T COG2812 39 HAYLFSGPRGVGKTTIARILAKALNCEN 66 (515)
T ss_pred hhhhhcCCCCcCchhHHHHHHHHhcCCC
Confidence 3468999999999999999999998876
No 477
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.84 E-value=0.0083 Score=52.21 Aligned_cols=26 Identities=35% Similarity=0.437 Sum_probs=22.4
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHHh
Q 022951 73 KHVQWVFLGCPGVGKGTYASRLSNLL 98 (289)
Q Consensus 73 ~~~~Ivl~GppGsGKSTlak~La~~l 98 (289)
..-++.|+|+.||||||+.+.|+..+
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~i~G~~ 50 (220)
T cd03265 25 RGEIFGLLGPNGAGKTTTIKMLTTLL 50 (220)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34678999999999999999998654
No 478
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.83 E-value=0.0081 Score=51.32 Aligned_cols=24 Identities=25% Similarity=0.314 Sum_probs=21.3
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHH
Q 022951 73 KHVQWVFLGCPGVGKGTYASRLSN 96 (289)
Q Consensus 73 ~~~~Ivl~GppGsGKSTlak~La~ 96 (289)
..-++.|+|++||||||+.+.|+.
T Consensus 32 ~Ge~~~l~G~nGsGKSTLl~~l~G 55 (192)
T cd03232 32 PGTLTALMGESGAGKTTLLDVLAG 55 (192)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhC
Confidence 346789999999999999999985
No 479
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=95.83 E-value=0.0086 Score=50.43 Aligned_cols=26 Identities=31% Similarity=0.383 Sum_probs=22.3
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHHh
Q 022951 73 KHVQWVFLGCPGVGKGTYASRLSNLL 98 (289)
Q Consensus 73 ~~~~Ivl~GppGsGKSTlak~La~~l 98 (289)
+.-++.|.|++||||||+.+.|+..+
T Consensus 27 ~Ge~~~i~G~nGsGKStLl~~l~G~~ 52 (178)
T cd03247 27 QGEKIALLGRSGSGKSTLLQLLTGDL 52 (178)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccC
Confidence 34578999999999999999998654
No 480
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=95.82 E-value=0.0076 Score=49.53 Aligned_cols=22 Identities=32% Similarity=0.507 Sum_probs=19.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHHH
Q 022951 76 QWVFLGCPGVGKGTYASRLSNL 97 (289)
Q Consensus 76 ~Ivl~GppGsGKSTlak~La~~ 97 (289)
+|+|+|++||||||+.++|...
T Consensus 2 ki~viG~~~~GKSsl~~~l~~~ 23 (172)
T cd01862 2 KVIILGDSGVGKTSLMNQYVNK 23 (172)
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999988653
No 481
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=95.82 E-value=0.0081 Score=50.98 Aligned_cols=26 Identities=27% Similarity=0.233 Sum_probs=22.6
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHHh
Q 022951 73 KHVQWVFLGCPGVGKGTYASRLSNLL 98 (289)
Q Consensus 73 ~~~~Ivl~GppGsGKSTlak~La~~l 98 (289)
..-++.|+|+.||||||+.+.|+..+
T Consensus 24 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 49 (177)
T cd03222 24 EGEVIGIVGPNGTGKTTAVKILAGQL 49 (177)
T ss_pred CCCEEEEECCCCChHHHHHHHHHcCC
Confidence 45688999999999999999998754
No 482
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=95.82 E-value=0.0081 Score=52.61 Aligned_cols=26 Identities=42% Similarity=0.429 Sum_probs=22.7
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHHh
Q 022951 73 KHVQWVFLGCPGVGKGTYASRLSNLL 98 (289)
Q Consensus 73 ~~~~Ivl~GppGsGKSTlak~La~~l 98 (289)
+.-++.|+|++||||||+.+.|+..+
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~l~G~~ 50 (230)
T TIGR03410 25 KGEVTCVLGRNGVGKTTLLKTLMGLL 50 (230)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 45688999999999999999998654
No 483
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=95.82 E-value=0.0083 Score=52.23 Aligned_cols=26 Identities=35% Similarity=0.401 Sum_probs=22.3
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHHh
Q 022951 73 KHVQWVFLGCPGVGKGTYASRLSNLL 98 (289)
Q Consensus 73 ~~~~Ivl~GppGsGKSTlak~La~~l 98 (289)
+.-++.|.||.||||||+.+.|+..+
T Consensus 12 ~Ge~~~l~G~NGsGKSTLlk~i~Gl~ 37 (213)
T PRK15177 12 YHEHIGILAAPGSGKTTLTRLLCGLD 37 (213)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 34678999999999999999998654
No 484
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=95.82 E-value=0.0086 Score=51.19 Aligned_cols=25 Identities=16% Similarity=0.316 Sum_probs=22.0
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHHHh
Q 022951 74 HVQWVFLGCPGVGKGTYASRLSNLL 98 (289)
Q Consensus 74 ~~~Ivl~GppGsGKSTlak~La~~l 98 (289)
.-+++|+|++||||||+.+.|+..+
T Consensus 26 Ge~~~l~G~nGsGKSTLl~~l~G~~ 50 (195)
T PRK13541 26 SAITYIKGANGCGKSSLLRMIAGIM 50 (195)
T ss_pred CcEEEEECCCCCCHHHHHHHHhcCC
Confidence 4578999999999999999998754
No 485
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=95.82 E-value=0.0095 Score=54.43 Aligned_cols=26 Identities=27% Similarity=0.353 Sum_probs=22.7
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHHh
Q 022951 73 KHVQWVFLGCPGVGKGTYASRLSNLL 98 (289)
Q Consensus 73 ~~~~Ivl~GppGsGKSTlak~La~~l 98 (289)
+...|.|+|+|||||||+.+.|...+
T Consensus 103 ~~~~v~l~G~pGsGKTTLl~~l~~~l 128 (290)
T PRK10463 103 KQLVLNLVSSPGSGKTTLLTETLMRL 128 (290)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 45778899999999999999888875
No 486
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=95.82 E-value=0.0086 Score=55.59 Aligned_cols=26 Identities=27% Similarity=0.436 Sum_probs=22.7
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHHh
Q 022951 73 KHVQWVFLGCPGVGKGTYASRLSNLL 98 (289)
Q Consensus 73 ~~~~Ivl~GppGsGKSTlak~La~~l 98 (289)
.+..|+|+|++||||||+.+.|...+
T Consensus 147 ~~~~ilI~G~tGSGKTTll~aL~~~~ 172 (319)
T PRK13894 147 AHRNILVIGGTGSGKTTLVNAIINEM 172 (319)
T ss_pred cCCeEEEECCCCCCHHHHHHHHHHhh
Confidence 35689999999999999999998764
No 487
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=95.82 E-value=0.0082 Score=49.26 Aligned_cols=23 Identities=22% Similarity=0.239 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHH
Q 022951 75 VQWVFLGCPGVGKGTYASRLSNL 97 (289)
Q Consensus 75 ~~Ivl~GppGsGKSTlak~La~~ 97 (289)
++|+|+|++||||||+.++|...
T Consensus 1 iki~i~G~~~~GKSsli~~l~~~ 23 (171)
T cd00157 1 IKIVVVGDGAVGKTCLLISYTTG 23 (171)
T ss_pred CEEEEECCCCCCHHHHHHHHHhC
Confidence 36899999999999999999754
No 488
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=95.81 E-value=0.0088 Score=49.41 Aligned_cols=22 Identities=32% Similarity=0.534 Sum_probs=19.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHH
Q 022951 75 VQWVFLGCPGVGKGTYASRLSN 96 (289)
Q Consensus 75 ~~Ivl~GppGsGKSTlak~La~ 96 (289)
++|+|+|.|||||||+.+++.+
T Consensus 2 ~ki~liG~~~~GKTsli~~~~~ 23 (168)
T cd04177 2 YKIVVLGAGGVGKSALTVQFVQ 23 (168)
T ss_pred eEEEEECCCCCCHHHHHHHHHh
Confidence 4689999999999999999864
No 489
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=95.81 E-value=0.0088 Score=49.87 Aligned_cols=22 Identities=23% Similarity=0.398 Sum_probs=19.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHH
Q 022951 75 VQWVFLGCPGVGKGTYASRLSN 96 (289)
Q Consensus 75 ~~Ivl~GppGsGKSTlak~La~ 96 (289)
.+|+|+|.||+||||+.+++..
T Consensus 2 ~kv~l~G~~g~GKTtl~~~~~~ 23 (180)
T cd04137 2 RKIAVLGSRSVGKSSLTVQFVE 23 (180)
T ss_pred eEEEEECCCCCCHHHHHHHHHh
Confidence 4789999999999999998874
No 490
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=95.81 E-value=0.0091 Score=50.09 Aligned_cols=26 Identities=31% Similarity=0.396 Sum_probs=22.5
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHHh
Q 022951 73 KHVQWVFLGCPGVGKGTYASRLSNLL 98 (289)
Q Consensus 73 ~~~~Ivl~GppGsGKSTlak~La~~l 98 (289)
..-++.|.|+.||||||+.+.|+..+
T Consensus 27 ~Ge~~~i~G~nGsGKStLl~~l~G~~ 52 (173)
T cd03246 27 PGESLAIIGPSGSGKSTLARLILGLL 52 (173)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhcc
Confidence 34578999999999999999998754
No 491
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=95.81 E-value=0.0085 Score=52.79 Aligned_cols=26 Identities=35% Similarity=0.341 Sum_probs=22.5
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHHh
Q 022951 73 KHVQWVFLGCPGVGKGTYASRLSNLL 98 (289)
Q Consensus 73 ~~~~Ivl~GppGsGKSTlak~La~~l 98 (289)
+.-++.|+|+.||||||+.+.|+..+
T Consensus 26 ~Ge~~~i~G~nGsGKSTLl~~l~G~~ 51 (236)
T TIGR03864 26 PGEFVALLGPNGAGKSTLFSLLTRLY 51 (236)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 45678999999999999999998654
No 492
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=95.80 E-value=0.0085 Score=53.17 Aligned_cols=26 Identities=23% Similarity=0.193 Sum_probs=22.5
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHHh
Q 022951 73 KHVQWVFLGCPGVGKGTYASRLSNLL 98 (289)
Q Consensus 73 ~~~~Ivl~GppGsGKSTlak~La~~l 98 (289)
+.-++.|+|++||||||+.+.|+..+
T Consensus 28 ~Ge~~~i~G~nGsGKSTLl~~l~G~~ 53 (250)
T PRK11264 28 PGEVVAIIGPSGSGKTTLLRCINLLE 53 (250)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 44678999999999999999998654
No 493
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=95.80 E-value=0.01 Score=49.96 Aligned_cols=25 Identities=40% Similarity=0.608 Sum_probs=22.4
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHH
Q 022951 72 GKHVQWVFLGCPGVGKGTYASRLSN 96 (289)
Q Consensus 72 ~~~~~Ivl~GppGsGKSTlak~La~ 96 (289)
.+...|+++|++||||||+.++|..
T Consensus 12 ~~~~~ililGl~~sGKTtll~~l~~ 36 (175)
T PF00025_consen 12 KKEIKILILGLDGSGKTTLLNRLKN 36 (175)
T ss_dssp TSEEEEEEEESTTSSHHHHHHHHHS
T ss_pred CcEEEEEEECCCccchHHHHHHhhh
Confidence 4678999999999999999999964
No 494
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=95.80 E-value=0.0091 Score=49.85 Aligned_cols=26 Identities=23% Similarity=0.326 Sum_probs=22.4
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHHh
Q 022951 73 KHVQWVFLGCPGVGKGTYASRLSNLL 98 (289)
Q Consensus 73 ~~~~Ivl~GppGsGKSTlak~La~~l 98 (289)
+.-++.|.|+.||||||+.+.|+..+
T Consensus 26 ~Ge~~~i~G~nGsGKSTLl~~l~G~~ 51 (166)
T cd03223 26 PGDRLLITGPSGTGKSSLFRALAGLW 51 (166)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34578999999999999999998654
No 495
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=95.80 E-value=0.0087 Score=52.39 Aligned_cols=26 Identities=23% Similarity=0.284 Sum_probs=22.2
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHHh
Q 022951 73 KHVQWVFLGCPGVGKGTYASRLSNLL 98 (289)
Q Consensus 73 ~~~~Ivl~GppGsGKSTlak~La~~l 98 (289)
+.-+++|+||.||||||+.+.|+..+
T Consensus 32 ~Ge~~~i~G~nGsGKSTLl~~l~G~~ 57 (225)
T PRK10247 32 AGEFKLITGPSGCGKSTLLKIVASLI 57 (225)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccc
Confidence 34578999999999999999998643
No 496
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=95.80 E-value=0.007 Score=56.69 Aligned_cols=25 Identities=28% Similarity=0.414 Sum_probs=21.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhC
Q 022951 75 VQWVFLGCPGVGKGTYASRLSNLLG 99 (289)
Q Consensus 75 ~~Ivl~GppGsGKSTlak~La~~lg 99 (289)
.-++|.||||+||||+|+.|+..-.
T Consensus 163 pSmIlWGppG~GKTtlArlia~tsk 187 (554)
T KOG2028|consen 163 PSMILWGPPGTGKTTLARLIASTSK 187 (554)
T ss_pred CceEEecCCCCchHHHHHHHHhhcC
Confidence 4578999999999999999988643
No 497
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=95.80 E-value=0.093 Score=45.95 Aligned_cols=34 Identities=18% Similarity=0.330 Sum_probs=27.0
Q ss_pred EEEEcCCCCCHHHHHHHHHHHh-------CCCeeehHHHHH
Q 022951 77 WVFLGCPGVGKGTYASRLSNLL-------GVPHIATGDLLD 110 (289)
Q Consensus 77 Ivl~GppGsGKSTlak~La~~l-------g~~~i~~d~l~~ 110 (289)
++|.|++|+|||.+.+.++..+ .+.|++..++..
T Consensus 37 l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~~~~f~~ 77 (219)
T PF00308_consen 37 LFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLSAEEFIR 77 (219)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEEHHHHHH
T ss_pred eEEECCCCCCHHHHHHHHHHHHHhccccccceeecHHHHHH
Confidence 6899999999999999998764 246788777663
No 498
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=95.79 E-value=0.0084 Score=52.30 Aligned_cols=26 Identities=35% Similarity=0.420 Sum_probs=22.5
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHHh
Q 022951 73 KHVQWVFLGCPGVGKGTYASRLSNLL 98 (289)
Q Consensus 73 ~~~~Ivl~GppGsGKSTlak~La~~l 98 (289)
..-++.|.|+.||||||+.+.|+..+
T Consensus 30 ~Ge~~~i~G~nGsGKSTLl~~l~G~~ 55 (228)
T cd03257 30 KGETLGLVGESGSGKSTLARAILGLL 55 (228)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 44688999999999999999998654
No 499
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=95.79 E-value=0.0084 Score=52.87 Aligned_cols=25 Identities=24% Similarity=0.340 Sum_probs=22.0
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHH
Q 022951 73 KHVQWVFLGCPGVGKGTYASRLSNL 97 (289)
Q Consensus 73 ~~~~Ivl~GppGsGKSTlak~La~~ 97 (289)
..-++.|+|+.||||||+.+.|+..
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~l~Gl 49 (243)
T TIGR01978 25 KGEIHAIMGPNGSGKSTLSKTIAGH 49 (243)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4468899999999999999999865
No 500
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=95.79 E-value=0.0095 Score=49.78 Aligned_cols=24 Identities=33% Similarity=0.379 Sum_probs=21.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHh
Q 022951 75 VQWVFLGCPGVGKGTYASRLSNLL 98 (289)
Q Consensus 75 ~~Ivl~GppGsGKSTlak~La~~l 98 (289)
..++|+|++|+||||+...|....
T Consensus 36 k~~vl~G~SGvGKSSLiN~L~~~~ 59 (161)
T PF03193_consen 36 KTSVLLGQSGVGKSSLINALLPEA 59 (161)
T ss_dssp SEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CEEEEECCCCCCHHHHHHHHHhhc
Confidence 678999999999999999997654
Done!