Query 022951
Match_columns 289
No_of_seqs 260 out of 1882
Neff 7.8
Searched_HMMs 29240
Date Mon Mar 25 13:52:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022951.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/022951hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3sr0_A Adenylate kinase; phosp 100.0 6.1E-38 2.1E-42 271.5 19.9 181 75-278 1-204 (206)
2 3gmt_A Adenylate kinase; ssgci 100.0 1.7E-36 5.8E-41 265.7 19.1 192 73-279 7-230 (230)
3 3umf_A Adenylate kinase; rossm 100.0 2.3E-33 8E-38 244.4 19.5 168 72-278 27-213 (217)
4 3tlx_A Adenylate kinase 2; str 100.0 5.7E-32 1.9E-36 239.3 21.1 190 73-277 28-242 (243)
5 3dl0_A Adenylate kinase; phosp 100.0 6.2E-31 2.1E-35 227.4 19.2 189 75-278 1-214 (216)
6 3fb4_A Adenylate kinase; psych 100.0 1.8E-30 6E-35 224.3 19.6 189 75-278 1-214 (216)
7 3be4_A Adenylate kinase; malar 100.0 2E-29 6.7E-34 218.8 20.5 189 73-276 4-217 (217)
8 1aky_A Adenylate kinase; ATP:A 100.0 2E-28 6.9E-33 212.5 22.7 190 73-277 3-218 (220)
9 1e4v_A Adenylate kinase; trans 100.0 2.1E-28 7.3E-33 211.6 21.5 188 75-277 1-214 (214)
10 1ak2_A Adenylate kinase isoenz 100.0 4.4E-28 1.5E-32 212.5 22.6 191 73-278 15-230 (233)
11 1zd8_A GTP:AMP phosphotransfer 100.0 1.1E-27 3.6E-32 209.0 20.8 194 73-283 6-219 (227)
12 2xb4_A Adenylate kinase; ATP-b 100.0 6.5E-28 2.2E-32 210.3 18.3 186 75-276 1-222 (223)
13 1zak_A Adenylate kinase; ATP:A 99.9 1.8E-26 6.3E-31 200.3 17.2 187 73-279 4-211 (222)
14 1ukz_A Uridylate kinase; trans 99.9 4.9E-23 1.7E-27 175.9 20.2 170 71-278 12-201 (203)
15 2c95_A Adenylate kinase 1; tra 99.9 8.6E-23 2.9E-27 172.7 19.8 167 73-278 8-193 (196)
16 1tev_A UMP-CMP kinase; ploop, 99.9 1E-22 3.6E-27 171.6 18.8 167 74-278 3-194 (196)
17 2cdn_A Adenylate kinase; phosp 99.9 8.5E-23 2.9E-27 174.4 18.3 164 68-277 14-200 (201)
18 1qf9_A UMP/CMP kinase, protein 99.9 3.5E-22 1.2E-26 168.1 20.3 165 73-278 5-191 (194)
19 2bwj_A Adenylate kinase 5; pho 99.9 1.7E-22 5.8E-27 171.3 18.3 166 74-278 12-196 (199)
20 3cm0_A Adenylate kinase; ATP-b 99.9 1.1E-21 3.7E-26 164.9 17.6 160 73-277 3-185 (186)
21 2bbw_A Adenylate kinase 4, AK4 99.9 5.9E-21 2E-25 168.2 21.4 193 73-286 26-242 (246)
22 3lw7_A Adenylate kinase relate 99.7 2.4E-16 8E-21 129.7 13.9 156 75-278 2-176 (179)
23 2pbr_A DTMP kinase, thymidylat 99.7 3.9E-15 1.3E-19 125.0 17.5 153 75-279 1-192 (195)
24 1nks_A Adenylate kinase; therm 99.7 5.1E-15 1.7E-19 124.0 18.1 157 75-277 2-194 (194)
25 1kht_A Adenylate kinase; phosp 99.7 4.2E-15 1.4E-19 124.5 17.5 103 74-179 3-135 (192)
26 3vaa_A Shikimate kinase, SK; s 99.7 9.8E-16 3.4E-20 130.5 13.5 160 73-279 24-196 (199)
27 4eaq_A DTMP kinase, thymidylat 99.7 4.3E-15 1.5E-19 129.9 17.5 164 73-279 25-225 (229)
28 3t61_A Gluconokinase; PSI-biol 99.6 2.1E-15 7.2E-20 128.4 14.5 152 73-279 17-180 (202)
29 3trf_A Shikimate kinase, SK; a 99.6 5.6E-15 1.9E-19 123.7 14.5 161 74-282 5-178 (185)
30 2z0h_A DTMP kinase, thymidylat 99.6 1.7E-14 5.8E-19 121.5 17.3 155 75-280 1-193 (197)
31 4hlc_A DTMP kinase, thymidylat 99.6 2.5E-14 8.5E-19 123.1 17.8 159 75-279 3-201 (205)
32 2iyv_A Shikimate kinase, SK; t 99.6 6.4E-15 2.2E-19 123.4 13.6 156 75-281 3-171 (184)
33 1ly1_A Polynucleotide kinase; 99.6 4.4E-15 1.5E-19 123.2 12.4 153 74-278 2-172 (181)
34 1e6c_A Shikimate kinase; phosp 99.6 1.4E-14 4.9E-19 119.6 15.1 154 75-278 3-170 (173)
35 2pt5_A Shikimate kinase, SK; a 99.6 8E-15 2.7E-19 120.7 13.1 103 75-181 1-114 (168)
36 3kb2_A SPBC2 prophage-derived 99.6 1E-14 3.5E-19 120.1 13.7 146 75-280 2-168 (173)
37 2wwf_A Thymidilate kinase, put 99.6 7.2E-15 2.5E-19 125.4 12.3 156 73-279 9-200 (212)
38 4edh_A DTMP kinase, thymidylat 99.6 1.1E-13 3.8E-18 119.7 19.3 161 73-279 5-207 (213)
39 2plr_A DTMP kinase, probable t 99.6 4.9E-14 1.7E-18 119.8 15.9 168 74-278 4-207 (213)
40 4eun_A Thermoresistant glucoki 99.6 3.7E-14 1.3E-18 120.7 14.9 156 73-279 28-194 (200)
41 2rhm_A Putative kinase; P-loop 99.6 2.1E-14 7.2E-19 120.6 13.0 108 73-181 4-126 (193)
42 3v9p_A DTMP kinase, thymidylat 99.6 1.9E-14 6.5E-19 125.7 12.9 159 73-277 24-225 (227)
43 1y63_A LMAJ004144AAA protein; 99.6 7.2E-14 2.5E-18 117.5 15.5 103 72-181 8-122 (184)
44 1knq_A Gluconate kinase; ALFA/ 99.6 1.3E-13 4.3E-18 114.5 16.1 155 73-278 7-173 (175)
45 1cke_A CK, MSSA, protein (cyti 99.6 9.2E-15 3.2E-19 126.1 9.1 164 74-278 5-222 (227)
46 1zuh_A Shikimate kinase; alpha 99.5 1.1E-13 3.7E-18 114.3 14.4 102 73-180 6-117 (168)
47 2v54_A DTMP kinase, thymidylat 99.5 1.1E-13 3.9E-18 117.2 14.5 154 73-279 3-191 (204)
48 2jaq_A Deoxyguanosine kinase; 99.5 6.4E-14 2.2E-18 118.4 12.8 162 75-279 1-201 (205)
49 1nn5_A Similar to deoxythymidy 99.5 1.4E-13 4.9E-18 117.4 14.6 157 73-279 8-201 (215)
50 3lv8_A DTMP kinase, thymidylat 99.5 2.4E-13 8.4E-18 119.4 16.4 161 73-280 26-230 (236)
51 4tmk_A Protein (thymidylate ki 99.5 2.8E-13 9.7E-18 117.2 16.5 159 74-279 3-207 (213)
52 2f6r_A COA synthase, bifunctio 99.5 1.4E-13 4.6E-18 123.9 14.9 154 72-278 73-268 (281)
53 1jjv_A Dephospho-COA kinase; P 99.5 1.6E-13 5.4E-18 117.0 14.1 148 75-278 3-196 (206)
54 2qor_A Guanylate kinase; phosp 99.5 1.2E-13 4.2E-18 117.9 13.3 153 73-280 11-198 (204)
55 1via_A Shikimate kinase; struc 99.5 7.5E-14 2.6E-18 116.1 11.4 152 75-279 5-167 (175)
56 3a4m_A L-seryl-tRNA(SEC) kinas 99.5 9.1E-14 3.1E-18 123.4 12.2 158 73-280 3-175 (260)
57 3hjn_A DTMP kinase, thymidylat 99.5 8.2E-13 2.8E-17 112.8 17.5 155 75-280 1-193 (197)
58 3iij_A Coilin-interacting nucl 99.5 4.3E-13 1.5E-17 111.8 15.4 101 73-181 10-118 (180)
59 1vht_A Dephospho-COA kinase; s 99.5 3.4E-13 1.2E-17 116.0 13.8 152 73-278 3-194 (218)
60 3ld9_A DTMP kinase, thymidylat 99.5 4.1E-13 1.4E-17 116.9 14.0 160 69-278 16-215 (223)
61 1ltq_A Polynucleotide kinase; 99.5 1.1E-13 3.7E-18 124.7 10.4 151 75-268 3-173 (301)
62 2vli_A Antibiotic resistance p 99.5 4.3E-13 1.5E-17 111.7 13.0 154 73-283 4-176 (183)
63 3nwj_A ATSK2; P loop, shikimat 99.5 4.5E-13 1.5E-17 118.7 13.2 163 74-279 48-237 (250)
64 1uf9_A TT1252 protein; P-loop, 99.5 8.5E-13 2.9E-17 111.5 14.3 156 71-280 5-195 (203)
65 2if2_A Dephospho-COA kinase; a 99.5 3.2E-13 1.1E-17 114.7 10.8 152 75-280 2-193 (204)
66 3ake_A Cytidylate kinase; CMP 99.4 1.7E-12 5.9E-17 110.0 13.9 37 76-112 4-40 (208)
67 2qt1_A Nicotinamide riboside k 99.4 4.4E-13 1.5E-17 114.3 10.0 159 73-278 20-205 (207)
68 1q3t_A Cytidylate kinase; nucl 99.4 9.9E-13 3.4E-17 114.8 11.9 40 72-111 14-53 (236)
69 1uj2_A Uridine-cytidine kinase 99.4 3.1E-13 1E-17 119.3 7.8 108 72-181 20-172 (252)
70 1kag_A SKI, shikimate kinase I 99.4 2.2E-12 7.5E-17 106.5 12.4 156 75-278 5-172 (173)
71 3tmk_A Thymidylate kinase; pho 99.4 6.5E-12 2.2E-16 108.8 13.6 161 73-280 4-204 (216)
72 2h92_A Cytidylate kinase; ross 99.4 3.7E-12 1.3E-16 109.3 11.4 38 74-111 3-40 (219)
73 1p5z_B DCK, deoxycytidine kina 99.3 2.4E-13 8.2E-18 120.6 3.1 83 159-278 174-258 (263)
74 4i1u_A Dephospho-COA kinase; s 99.3 2.1E-11 7.1E-16 105.1 14.9 150 73-278 8-201 (210)
75 4e22_A Cytidylate kinase; P-lo 99.3 2.4E-11 8.1E-16 107.3 14.2 39 73-111 26-64 (252)
76 2yvu_A Probable adenylyl-sulfa 99.3 8.1E-12 2.8E-16 104.7 9.3 105 72-178 11-131 (186)
77 1qhx_A CPT, protein (chloramph 99.3 1.7E-11 6E-16 101.5 11.1 107 74-181 3-134 (178)
78 3fdi_A Uncharacterized protein 99.3 1.3E-10 4.3E-15 99.4 16.6 104 74-180 6-137 (201)
79 1m7g_A Adenylylsulfate kinase; 99.3 2.6E-12 8.9E-17 110.1 6.0 102 73-177 24-149 (211)
80 3hdt_A Putative kinase; struct 99.2 5E-10 1.7E-14 97.3 17.4 104 73-180 13-157 (223)
81 1gvn_B Zeta; postsegregational 99.2 3.5E-10 1.2E-14 101.8 15.0 104 73-181 32-163 (287)
82 3zvl_A Bifunctional polynucleo 99.2 1.1E-10 3.7E-15 110.5 11.9 97 71-182 255-359 (416)
83 3r20_A Cytidylate kinase; stru 99.2 7.9E-10 2.7E-14 96.7 15.6 39 73-111 8-46 (233)
84 2grj_A Dephospho-COA kinase; T 99.2 1.7E-10 5.8E-15 98.0 10.7 104 72-177 10-147 (192)
85 3tau_A Guanylate kinase, GMP k 99.1 5.1E-11 1.8E-15 102.0 7.2 59 217-282 134-192 (208)
86 1ex7_A Guanylate kinase; subst 99.1 1.3E-09 4.5E-14 92.1 15.3 149 77-279 4-185 (186)
87 2ocp_A DGK, deoxyguanosine kin 99.1 1.3E-10 4.3E-15 101.6 8.6 27 73-99 1-27 (241)
88 2vp4_A Deoxynucleoside kinase; 99.1 9.6E-11 3.3E-15 101.8 7.2 80 158-279 145-225 (230)
89 1gtv_A TMK, thymidylate kinase 99.1 1E-11 3.6E-16 105.7 0.7 106 75-181 1-154 (214)
90 2j41_A Guanylate kinase; GMP, 99.1 8.2E-11 2.8E-15 99.5 5.9 152 73-281 5-189 (207)
91 3tr0_A Guanylate kinase, GMP k 99.1 5.6E-10 1.9E-14 94.3 11.0 152 74-281 7-189 (205)
92 2pez_A Bifunctional 3'-phospho 99.1 2.9E-10 9.9E-15 94.5 9.0 103 73-180 4-125 (179)
93 3uie_A Adenylyl-sulfate kinase 99.1 2.3E-09 7.9E-14 90.8 14.1 103 73-177 24-140 (200)
94 2p5t_B PEZT; postsegregational 99.1 3.9E-10 1.3E-14 99.4 9.4 107 73-181 31-158 (253)
95 2ze6_A Isopentenyl transferase 99.0 5.8E-10 2E-14 98.5 8.3 106 75-182 2-140 (253)
96 3a00_A Guanylate kinase, GMP k 99.0 1.3E-09 4.3E-14 91.5 7.9 54 221-279 132-185 (186)
97 1x6v_B Bifunctional 3'-phospho 98.9 2.1E-09 7.3E-14 106.2 10.0 105 73-179 51-171 (630)
98 2axn_A 6-phosphofructo-2-kinas 98.9 2.1E-09 7.1E-14 104.5 8.7 110 72-181 33-169 (520)
99 1zp6_A Hypothetical protein AT 98.9 2E-08 6.9E-13 83.7 12.7 107 73-181 8-127 (191)
100 2gks_A Bifunctional SAT/APS ki 98.8 3.9E-09 1.3E-13 103.2 7.1 104 73-178 371-488 (546)
101 3asz_A Uridine kinase; cytidin 98.8 4E-08 1.4E-12 83.4 10.7 106 73-180 5-145 (211)
102 2bdt_A BH3686; alpha-beta prot 98.8 4.1E-08 1.4E-12 82.0 10.5 104 75-181 3-123 (189)
103 3a8t_A Adenylate isopentenyltr 98.7 1.1E-08 3.6E-13 94.0 5.8 108 73-181 39-195 (339)
104 3lnc_A Guanylate kinase, GMP k 98.7 3.5E-08 1.2E-12 85.3 8.3 26 73-98 26-52 (231)
105 1m8p_A Sulfate adenylyltransfe 98.7 3.8E-08 1.3E-12 96.7 8.5 104 72-177 394-513 (573)
106 2jeo_A Uridine-cytidine kinase 98.6 5.4E-07 1.8E-11 78.6 13.5 106 73-181 24-175 (245)
107 1rz3_A Hypothetical protein rb 98.6 7.6E-08 2.6E-12 81.6 7.3 107 73-181 21-165 (201)
108 3czq_A Putative polyphosphate 98.6 2.4E-07 8.3E-12 83.6 10.7 162 72-281 84-281 (304)
109 1a7j_A Phosphoribulokinase; tr 98.6 1.4E-07 4.8E-12 84.9 8.9 37 73-109 4-45 (290)
110 1p6x_A Thymidine kinase; P-loo 98.5 5.3E-07 1.8E-11 82.7 11.7 28 73-100 6-33 (334)
111 3tqc_A Pantothenate kinase; bi 98.5 2E-07 6.7E-12 85.2 8.7 108 72-181 90-248 (321)
112 3ch4_B Pmkase, phosphomevalona 98.5 9.1E-07 3.1E-11 75.4 11.5 104 73-177 10-144 (202)
113 1s96_A Guanylate kinase, GMP k 98.5 1.6E-06 5.5E-11 74.8 12.8 52 224-282 150-201 (219)
114 1kgd_A CASK, peripheral plasma 98.5 5.4E-07 1.9E-11 74.9 9.3 26 74-99 5-30 (180)
115 3ney_A 55 kDa erythrocyte memb 98.5 4.4E-06 1.5E-10 71.0 14.4 28 72-99 17-44 (197)
116 3c8u_A Fructokinase; YP_612366 98.4 3.3E-07 1.1E-11 78.0 7.3 110 72-181 20-169 (208)
117 1bif_A 6-phosphofructo-2-kinas 98.4 5E-07 1.7E-11 86.5 9.1 40 72-111 37-81 (469)
118 3cr8_A Sulfate adenylyltranfer 98.4 4.9E-07 1.7E-11 88.3 7.5 103 73-178 368-487 (552)
119 1e2k_A Thymidine kinase; trans 98.3 3E-06 1E-10 77.6 10.7 27 73-99 3-29 (331)
120 1sq5_A Pantothenate kinase; P- 98.3 1.8E-06 6.2E-11 78.1 9.2 108 72-181 78-236 (308)
121 1of1_A Thymidine kinase; trans 98.3 5E-06 1.7E-10 77.3 11.6 27 73-99 48-74 (376)
122 1lvg_A Guanylate kinase, GMP k 98.2 1.2E-05 4.1E-10 67.8 12.3 58 219-280 132-189 (198)
123 1osn_A Thymidine kinase, VZV-T 98.2 1.6E-06 5.4E-11 79.7 7.1 28 73-100 11-39 (341)
124 3czp_A Putative polyphosphate 98.1 1.3E-05 4.5E-10 77.1 10.1 105 72-184 41-172 (500)
125 3d3q_A TRNA delta(2)-isopenten 98.1 3.3E-06 1.1E-10 77.6 5.6 34 75-108 8-41 (340)
126 3crm_A TRNA delta(2)-isopenten 98.0 1.9E-06 6.5E-11 78.6 3.5 35 75-109 6-40 (323)
127 3czp_A Putative polyphosphate 97.9 1.5E-05 5.2E-10 76.7 7.9 102 72-184 298-429 (500)
128 4gp7_A Metallophosphoesterase; 97.9 7.3E-05 2.5E-09 61.4 10.8 105 73-181 8-122 (171)
129 3exa_A TRNA delta(2)-isopenten 97.9 5.9E-06 2E-10 75.0 4.2 35 74-108 3-37 (322)
130 1z6g_A Guanylate kinase; struc 97.9 0.00015 5E-09 62.0 12.6 55 223-282 157-211 (218)
131 3foz_A TRNA delta(2)-isopenten 97.8 1.2E-05 4.2E-10 72.8 4.3 35 74-108 10-44 (316)
132 3rhf_A Putative polyphosphate 97.7 0.00023 7.9E-09 63.5 11.2 163 72-279 73-268 (289)
133 3eph_A TRNA isopentenyltransfe 97.7 2.2E-05 7.5E-10 73.6 4.2 34 75-108 3-36 (409)
134 3t15_A Ribulose bisphosphate c 97.6 3.3E-05 1.1E-09 69.2 4.5 37 73-109 35-73 (293)
135 1dek_A Deoxynucleoside monopho 97.6 5E-05 1.7E-09 66.4 4.6 35 75-109 2-36 (241)
136 1kjw_A Postsynaptic density pr 97.6 0.0022 7.4E-08 57.6 15.4 45 230-280 239-283 (295)
137 4b4t_M 26S protease regulatory 97.5 6.7E-05 2.3E-09 71.0 4.7 32 73-104 214-245 (434)
138 3tvt_A Disks large 1 tumor sup 97.5 0.0014 4.8E-08 58.7 13.0 49 225-282 232-280 (292)
139 1g8f_A Sulfate adenylyltransfe 97.5 5E-05 1.7E-09 73.4 3.4 35 73-107 394-435 (511)
140 4b4t_L 26S protease subunit RP 97.5 7.9E-05 2.7E-09 70.6 4.7 32 73-104 214-245 (437)
141 4b4t_K 26S protease regulatory 97.5 8E-05 2.7E-09 70.4 4.7 32 74-105 206-237 (428)
142 2qz4_A Paraplegin; AAA+, SPG7, 97.5 0.0001 3.4E-09 63.9 4.9 31 74-104 39-69 (262)
143 4b4t_J 26S protease regulatory 97.4 7.5E-05 2.6E-09 70.0 4.2 32 74-105 182-213 (405)
144 1lv7_A FTSH; alpha/beta domain 97.4 9.8E-05 3.3E-09 64.3 4.5 31 75-105 46-76 (257)
145 3ec2_A DNA replication protein 97.4 0.00015 5.2E-09 59.5 4.9 37 74-110 38-80 (180)
146 3cf0_A Transitional endoplasmi 97.4 0.0001 3.6E-09 66.0 4.1 36 74-109 49-86 (301)
147 1d2n_A N-ethylmaleimide-sensit 97.4 0.00015 5.2E-09 63.6 5.1 33 73-105 63-95 (272)
148 3hws_A ATP-dependent CLP prote 97.4 0.00013 4.4E-09 67.0 4.7 32 74-105 51-82 (363)
149 3h4m_A Proteasome-activating n 97.4 0.00013 4.4E-09 64.3 4.5 31 74-104 51-81 (285)
150 3b9p_A CG5977-PA, isoform A; A 97.4 0.00013 4.4E-09 64.7 4.4 31 74-104 54-84 (297)
151 1ye8_A Protein THEP1, hypothet 97.3 0.00011 3.8E-09 61.0 3.6 26 75-100 1-26 (178)
152 4b4t_H 26S protease regulatory 97.3 0.00012 4.1E-09 69.7 4.1 32 73-104 242-273 (467)
153 1g41_A Heat shock protein HSLU 97.3 0.00011 3.8E-09 69.7 3.9 33 74-106 50-82 (444)
154 2chg_A Replication factor C sm 97.3 0.00078 2.7E-08 55.8 8.7 22 77-98 41-62 (226)
155 4b4t_I 26S protease regulatory 97.3 0.00015 5.2E-09 68.4 4.6 33 73-105 215-247 (437)
156 2ga8_A Hypothetical 39.9 kDa p 97.3 5.2E-05 1.8E-09 69.9 0.9 30 73-102 23-52 (359)
157 1c9k_A COBU, adenosylcobinamid 97.3 0.00023 7.9E-09 59.4 4.8 86 77-178 2-91 (180)
158 3eie_A Vacuolar protein sortin 97.3 0.00019 6.6E-09 64.8 4.6 31 74-104 51-81 (322)
159 2x8a_A Nuclear valosin-contain 97.3 0.00017 5.8E-09 64.0 4.0 27 77-103 47-73 (274)
160 1um8_A ATP-dependent CLP prote 97.2 0.00019 6.6E-09 66.1 4.3 31 75-105 73-103 (376)
161 1odf_A YGR205W, hypothetical 3 97.2 0.00022 7.6E-09 63.9 4.5 37 73-109 30-74 (290)
162 1ofh_A ATP-dependent HSL prote 97.2 0.0002 6.9E-09 63.4 4.1 30 75-104 51-80 (310)
163 1jbk_A CLPB protein; beta barr 97.2 0.00024 8.2E-09 57.6 4.2 25 74-98 43-67 (195)
164 3pvs_A Replication-associated 97.2 0.00091 3.1E-08 63.5 8.4 31 75-105 51-81 (447)
165 1xwi_A SKD1 protein; VPS4B, AA 97.2 0.00028 9.4E-09 64.0 4.4 30 74-103 45-75 (322)
166 2p65_A Hypothetical protein PF 97.2 0.00021 7.3E-09 57.9 3.3 25 74-98 43-67 (187)
167 2qmh_A HPR kinase/phosphorylas 97.2 0.0002 6.7E-09 60.9 3.1 35 73-108 33-67 (205)
168 1ixz_A ATP-dependent metallopr 97.2 0.00029 9.8E-09 61.1 4.3 28 77-104 52-79 (254)
169 3cf2_A TER ATPase, transitiona 97.2 0.00062 2.1E-08 69.1 7.3 38 72-109 236-275 (806)
170 2qp9_X Vacuolar protein sortin 97.1 0.00028 9.6E-09 64.8 4.2 32 74-105 84-115 (355)
171 3kfv_A Tight junction protein 97.1 0.0032 1.1E-07 56.8 11.1 143 75-281 146-292 (308)
172 3syl_A Protein CBBX; photosynt 97.1 0.0003 1E-08 62.5 4.2 25 74-98 67-91 (309)
173 1in4_A RUVB, holliday junction 97.1 0.00036 1.2E-08 63.5 4.7 28 75-102 52-79 (334)
174 2r62_A Cell division protease 97.1 0.00014 4.8E-09 63.5 1.7 29 77-105 47-75 (268)
175 3cf2_A TER ATPase, transitiona 97.1 0.00092 3.1E-08 67.9 7.7 37 73-109 510-548 (806)
176 3d8b_A Fidgetin-like protein 1 97.1 0.00038 1.3E-08 63.9 4.5 32 73-104 116-147 (357)
177 2c9o_A RUVB-like 1; hexameric 97.0 0.0004 1.4E-08 66.0 4.3 32 74-105 63-96 (456)
178 2w58_A DNAI, primosome compone 97.0 0.00077 2.6E-08 56.1 5.6 38 75-112 55-97 (202)
179 2xkx_A Disks large homolog 4; 97.0 0.01 3.5E-07 59.6 14.7 46 230-281 665-710 (721)
180 3pfi_A Holliday junction ATP-d 97.0 0.00047 1.6E-08 62.2 4.5 31 75-105 56-86 (338)
181 3bos_A Putative DNA replicatio 97.0 0.00047 1.6E-08 58.3 4.1 36 73-108 51-91 (242)
182 1iy2_A ATP-dependent metallopr 97.0 0.00048 1.7E-08 60.7 4.3 28 77-104 76-103 (278)
183 1svm_A Large T antigen; AAA+ f 97.0 0.0006 2E-08 63.4 4.7 32 73-104 168-199 (377)
184 3n70_A Transport activator; si 96.9 0.00047 1.6E-08 54.8 3.4 23 76-98 26-48 (145)
185 1znw_A Guanylate kinase, GMP k 96.9 0.00052 1.8E-08 57.8 3.8 27 73-99 19-45 (207)
186 3aez_A Pantothenate kinase; tr 96.9 0.00059 2E-08 61.8 4.3 107 72-181 88-239 (312)
187 3vfd_A Spastin; ATPase, microt 96.9 0.00061 2.1E-08 63.2 4.5 32 74-105 148-179 (389)
188 1sxj_A Activator 1 95 kDa subu 96.9 0.00063 2.2E-08 65.6 4.5 32 74-105 77-108 (516)
189 2ce7_A Cell division protein F 96.9 0.00077 2.6E-08 64.5 4.9 30 76-105 51-80 (476)
190 1tue_A Replication protein E1; 96.9 0.00056 1.9E-08 58.3 3.4 30 75-104 59-88 (212)
191 3u61_B DNA polymerase accessor 96.8 0.0022 7.6E-08 57.4 7.4 32 74-105 48-79 (324)
192 2kjq_A DNAA-related protein; s 96.8 0.00039 1.3E-08 55.9 2.0 33 73-105 35-72 (149)
193 2zan_A Vacuolar protein sortin 96.8 0.00077 2.6E-08 63.8 4.3 36 74-109 167-205 (444)
194 1njg_A DNA polymerase III subu 96.8 0.00075 2.6E-08 56.6 3.8 26 75-100 46-71 (250)
195 1xjc_A MOBB protein homolog; s 96.8 0.00083 2.8E-08 55.4 3.9 25 74-98 4-28 (169)
196 1l8q_A Chromosomal replication 96.8 0.00094 3.2E-08 60.0 4.3 35 75-109 38-77 (324)
197 3uk6_A RUVB-like 2; hexameric 96.7 0.00093 3.2E-08 60.8 4.0 27 74-100 70-96 (368)
198 2r44_A Uncharacterized protein 96.7 0.00069 2.4E-08 61.0 3.1 28 76-103 48-75 (331)
199 4fcw_A Chaperone protein CLPB; 96.7 0.0013 4.4E-08 58.4 4.8 24 75-98 48-71 (311)
200 1hqc_A RUVB; extended AAA-ATPa 96.7 0.00087 3E-08 59.9 3.5 30 75-104 39-68 (324)
201 3m6a_A ATP-dependent protease 96.7 0.0012 4E-08 64.2 4.5 32 73-104 107-138 (543)
202 2qby_B CDC6 homolog 3, cell di 96.6 0.0013 4.4E-08 60.1 4.2 25 74-98 45-69 (384)
203 3co5_A Putative two-component 96.6 0.00033 1.1E-08 55.6 0.2 27 76-103 29-55 (143)
204 1htw_A HI0065; nucleotide-bind 96.6 0.0016 5.5E-08 52.9 4.3 26 73-98 32-57 (158)
205 2a5j_A RAS-related protein RAB 96.6 0.0017 5.8E-08 53.3 4.5 26 72-97 19-44 (191)
206 2dhr_A FTSH; AAA+ protein, hex 96.6 0.0013 4.6E-08 63.2 4.3 29 76-104 66-94 (499)
207 4a74_A DNA repair and recombin 96.6 0.0015 5E-08 55.1 4.1 25 74-98 25-49 (231)
208 3hu3_A Transitional endoplasmi 96.6 0.0014 4.9E-08 62.9 4.4 31 74-104 238-268 (489)
209 2ehv_A Hypothetical protein PH 96.6 0.0011 3.9E-08 56.6 3.4 23 73-95 29-51 (251)
210 2v1u_A Cell division control p 96.6 0.0011 3.7E-08 60.3 3.4 26 73-98 43-68 (387)
211 1rj9_A FTSY, signal recognitio 96.6 0.0016 5.4E-08 58.7 4.4 26 73-98 101-126 (304)
212 1sxj_B Activator 1 37 kDa subu 96.6 0.0045 1.6E-07 54.8 7.4 22 77-98 45-66 (323)
213 3shw_A Tight junction protein 96.6 0.0029 9.9E-08 60.3 6.4 150 72-280 222-374 (468)
214 1a5t_A Delta prime, HOLB; zinc 96.6 0.0025 8.7E-08 57.8 5.8 28 74-101 24-51 (334)
215 2oil_A CATX-8, RAS-related pro 96.6 0.0016 5.4E-08 53.4 4.0 26 72-97 23-48 (193)
216 2qby_A CDC6 homolog 1, cell di 96.6 0.0015 5.2E-08 59.2 4.2 26 73-98 44-69 (386)
217 3te6_A Regulatory protein SIR3 96.6 0.001 3.5E-08 60.4 3.0 26 73-98 44-69 (318)
218 2gno_A DNA polymerase III, gam 96.6 0.007 2.4E-07 54.4 8.5 25 74-98 18-42 (305)
219 1np6_A Molybdopterin-guanine d 96.5 0.0016 5.6E-08 53.8 3.9 25 74-98 6-30 (174)
220 2h57_A ADP-ribosylation factor 96.5 0.0011 3.9E-08 54.2 2.9 27 71-97 18-44 (190)
221 2eyu_A Twitching motility prot 96.5 0.0019 6.5E-08 56.8 4.4 26 73-98 24-49 (261)
222 3e70_C DPA, signal recognition 96.5 0.0019 6.6E-08 58.8 4.5 27 72-98 127-153 (328)
223 2i3b_A HCR-ntpase, human cance 96.5 0.0015 5E-08 54.8 3.4 23 76-98 3-25 (189)
224 2w0m_A SSO2452; RECA, SSPF, un 96.5 0.0019 6.4E-08 54.4 4.0 25 74-98 23-47 (235)
225 3pxg_A Negative regulator of g 96.5 0.002 6.8E-08 61.4 4.5 25 74-98 201-225 (468)
226 1vma_A Cell division protein F 96.5 0.0021 7.1E-08 58.0 4.3 27 72-98 102-128 (306)
227 2r2a_A Uncharacterized protein 96.4 0.0019 6.3E-08 54.6 3.7 24 74-97 5-28 (199)
228 1ypw_A Transitional endoplasmi 96.4 0.0017 5.9E-08 66.0 4.1 34 72-105 236-269 (806)
229 2v9p_A Replication protein E1; 96.4 0.002 6.8E-08 58.1 4.0 30 73-102 125-154 (305)
230 2cvh_A DNA repair and recombin 96.4 0.0019 6.6E-08 54.0 3.7 32 74-105 20-53 (220)
231 3tsz_A Tight junction protein 96.4 0.0065 2.2E-07 56.6 7.5 143 73-280 231-382 (391)
232 2orw_A Thymidine kinase; TMTK, 96.4 0.0023 7.9E-08 53.2 3.9 25 74-98 3-27 (184)
233 3b9q_A Chloroplast SRP recepto 96.4 0.0024 8.3E-08 57.4 4.3 27 72-98 98-124 (302)
234 3c5c_A RAS-like protein 12; GD 96.4 0.0023 7.9E-08 52.5 3.8 26 72-97 19-44 (187)
235 3clv_A RAB5 protein, putative; 96.3 0.0034 1.2E-07 51.1 4.7 27 71-97 4-30 (208)
236 2h17_A ADP-ribosylation factor 96.3 0.002 6.9E-08 52.3 3.2 27 71-97 18-44 (181)
237 2f1r_A Molybdopterin-guanine d 96.3 0.0012 4.1E-08 54.5 1.8 24 75-98 3-26 (171)
238 1fnn_A CDC6P, cell division co 96.3 0.0029 1E-07 57.6 4.6 23 76-98 46-68 (389)
239 1sxj_D Activator 1 41 kDa subu 96.3 0.0021 7.3E-08 57.8 3.6 23 77-99 61-83 (353)
240 2bjv_A PSP operon transcriptio 96.3 0.0021 7E-08 56.0 3.3 25 75-99 30-54 (265)
241 1sxj_C Activator 1 40 kDa subu 96.3 0.0021 7.3E-08 58.2 3.5 23 77-99 49-71 (340)
242 3ihw_A Centg3; RAS, centaurin, 96.3 0.003 1E-07 51.7 4.2 27 71-97 17-43 (184)
243 2gf9_A RAS-related protein RAB 96.3 0.0031 1.1E-07 51.5 4.2 25 73-97 21-45 (189)
244 1z2a_A RAS-related protein RAB 96.3 0.0028 9.5E-08 50.2 3.8 25 73-97 4-28 (168)
245 1zd9_A ADP-ribosylation factor 96.3 0.0027 9.4E-08 51.9 3.8 26 72-97 20-45 (188)
246 1jr3_A DNA polymerase III subu 96.3 0.0028 9.4E-08 57.6 4.1 26 75-100 39-64 (373)
247 3tif_A Uncharacterized ABC tra 96.3 0.0023 7.7E-08 55.4 3.2 26 73-98 30-55 (235)
248 1sxj_E Activator 1 40 kDa subu 96.2 0.0024 8.3E-08 57.7 3.6 22 77-98 39-60 (354)
249 2lkc_A Translation initiation 96.2 0.0038 1.3E-07 50.0 4.4 26 71-96 5-30 (178)
250 1g8p_A Magnesium-chelatase 38 96.2 0.0014 4.7E-08 59.1 1.8 23 77-99 48-70 (350)
251 2px0_A Flagellar biosynthesis 96.2 0.0033 1.1E-07 56.3 4.3 26 73-98 104-129 (296)
252 1oix_A RAS-related protein RAB 96.2 0.0029 9.9E-08 52.2 3.6 25 73-97 28-52 (191)
253 1lw7_A Transcriptional regulat 96.2 0.0023 7.8E-08 58.8 3.3 28 74-101 170-197 (365)
254 2z4s_A Chromosomal replication 96.2 0.0032 1.1E-07 59.5 4.3 37 74-110 130-173 (440)
255 1n0w_A DNA repair protein RAD5 96.2 0.0027 9.3E-08 54.0 3.5 24 74-97 24-47 (243)
256 1kao_A RAP2A; GTP-binding prot 96.2 0.0034 1.2E-07 49.4 3.8 24 74-97 3-26 (167)
257 3kl4_A SRP54, signal recogniti 96.2 0.0045 1.5E-07 58.5 5.1 26 73-98 96-121 (433)
258 3tqf_A HPR(Ser) kinase; transf 96.2 0.0031 1.1E-07 52.3 3.5 31 74-105 16-46 (181)
259 2ce2_X GTPase HRAS; signaling 96.2 0.0034 1.2E-07 49.3 3.7 24 74-97 3-26 (166)
260 2pcj_A ABC transporter, lipopr 96.2 0.0022 7.5E-08 55.0 2.8 25 74-98 30-54 (224)
261 2f9l_A RAB11B, member RAS onco 96.2 0.0033 1.1E-07 52.0 3.8 24 74-97 5-28 (199)
262 1z0f_A RAB14, member RAS oncog 96.2 0.0036 1.2E-07 50.0 3.9 26 72-97 13-38 (179)
263 1nrj_B SR-beta, signal recogni 96.2 0.0035 1.2E-07 52.4 3.9 27 72-98 10-36 (218)
264 2onk_A Molybdate/tungstate ABC 96.2 0.0028 9.7E-08 55.0 3.4 24 75-98 25-48 (240)
265 3t1o_A Gliding protein MGLA; G 96.2 0.0026 9E-08 51.8 3.0 28 72-99 12-39 (198)
266 3pxi_A Negative regulator of g 96.2 0.0035 1.2E-07 63.2 4.5 33 74-106 201-243 (758)
267 2wji_A Ferrous iron transport 96.2 0.0034 1.2E-07 50.3 3.6 23 74-96 3-25 (165)
268 1z06_A RAS-related protein RAB 96.1 0.0035 1.2E-07 51.2 3.8 26 72-97 18-43 (189)
269 1cr0_A DNA primase/helicase; R 96.1 0.0036 1.2E-07 55.5 4.1 26 73-98 34-59 (296)
270 1iqp_A RFCS; clamp loader, ext 96.1 0.0037 1.3E-07 55.5 4.1 24 76-99 48-71 (327)
271 2og2_A Putative signal recogni 96.1 0.0038 1.3E-07 57.6 4.3 27 72-98 155-181 (359)
272 2zej_A Dardarin, leucine-rich 96.1 0.0026 8.9E-08 51.9 2.9 23 74-96 2-24 (184)
273 3kkq_A RAS-related protein M-R 96.1 0.0045 1.5E-07 50.0 4.2 25 73-97 17-41 (183)
274 2qen_A Walker-type ATPase; unk 96.1 0.0038 1.3E-07 55.7 4.1 33 75-107 32-64 (350)
275 3bwd_D RAC-like GTP-binding pr 96.1 0.0039 1.3E-07 50.2 3.8 27 71-97 5-31 (182)
276 2dyk_A GTP-binding protein; GT 96.1 0.0041 1.4E-07 48.9 3.8 23 75-97 2-24 (161)
277 2wsm_A Hydrogenase expression/ 96.1 0.0043 1.5E-07 52.0 4.2 26 73-98 29-54 (221)
278 2cbz_A Multidrug resistance-as 96.1 0.0031 1.1E-07 54.6 3.2 26 73-98 30-55 (237)
279 3dm5_A SRP54, signal recogniti 96.1 0.0054 1.8E-07 58.1 5.1 26 73-98 99-124 (443)
280 1u8z_A RAS-related protein RAL 96.1 0.0042 1.4E-07 48.9 3.8 24 74-97 4-27 (168)
281 2wjg_A FEOB, ferrous iron tran 96.1 0.0046 1.6E-07 50.2 4.1 24 73-96 6-29 (188)
282 3oes_A GTPase rhebl1; small GT 96.1 0.0039 1.3E-07 51.6 3.7 27 71-97 21-47 (201)
283 2fn4_A P23, RAS-related protei 96.1 0.0046 1.6E-07 49.5 4.0 25 73-97 8-32 (181)
284 2qgz_A Helicase loader, putati 96.1 0.0041 1.4E-07 55.9 4.1 39 74-112 152-196 (308)
285 2nzj_A GTP-binding protein REM 96.1 0.0042 1.4E-07 49.5 3.7 24 73-96 3-26 (175)
286 1g16_A RAS-related protein SEC 96.1 0.0042 1.4E-07 49.2 3.7 24 73-96 2-25 (170)
287 4bas_A ADP-ribosylation factor 96.1 0.0036 1.2E-07 51.2 3.4 25 72-96 15-39 (199)
288 3b85_A Phosphate starvation-in 96.1 0.0026 8.9E-08 54.0 2.6 24 74-97 22-45 (208)
289 1ky3_A GTP-binding protein YPT 96.1 0.0043 1.5E-07 49.7 3.8 25 73-97 7-31 (182)
290 3t5g_A GTP-binding protein RHE 96.0 0.0036 1.2E-07 50.5 3.3 24 73-96 5-28 (181)
291 2yhs_A FTSY, cell division pro 96.0 0.0043 1.5E-07 59.6 4.3 27 72-98 291-317 (503)
292 2dr3_A UPF0273 protein PH0284; 96.0 0.0043 1.5E-07 52.8 3.9 32 74-105 23-59 (247)
293 2efe_B Small GTP-binding prote 96.0 0.0041 1.4E-07 50.0 3.6 25 73-97 11-35 (181)
294 3gfo_A Cobalt import ATP-bindi 96.0 0.0029 9.9E-08 56.2 2.9 25 74-98 34-58 (275)
295 4g1u_C Hemin import ATP-bindin 96.0 0.0029 1E-07 55.8 2.9 25 74-98 37-61 (266)
296 2hf9_A Probable hydrogenase ni 96.0 0.005 1.7E-07 51.8 4.2 26 73-98 37-62 (226)
297 1upt_A ARL1, ADP-ribosylation 96.0 0.0052 1.8E-07 48.8 4.1 24 73-96 6-29 (171)
298 3p32_A Probable GTPase RV1496/ 96.0 0.005 1.7E-07 56.4 4.5 27 72-98 77-103 (355)
299 2g6b_A RAS-related protein RAB 96.0 0.0051 1.7E-07 49.4 4.0 26 72-97 8-33 (180)
300 1c1y_A RAS-related protein RAP 96.0 0.0048 1.6E-07 48.7 3.8 23 74-96 3-25 (167)
301 2erx_A GTP-binding protein DI- 96.0 0.0044 1.5E-07 49.1 3.6 24 73-96 2-25 (172)
302 2ewv_A Twitching motility prot 96.0 0.0048 1.6E-07 57.1 4.3 26 73-98 135-160 (372)
303 2iwr_A Centaurin gamma 1; ANK 96.0 0.0043 1.5E-07 49.9 3.5 25 73-97 6-30 (178)
304 1mv5_A LMRA, multidrug resista 96.0 0.0038 1.3E-07 54.2 3.4 26 73-98 27-52 (243)
305 2chq_A Replication factor C sm 96.0 0.0039 1.3E-07 55.1 3.6 22 77-98 41-62 (319)
306 2hxs_A RAB-26, RAS-related pro 96.0 0.0053 1.8E-07 49.2 4.0 25 73-97 5-29 (178)
307 1b0u_A Histidine permease; ABC 96.0 0.0036 1.2E-07 55.1 3.2 26 73-98 31-56 (262)
308 1wms_A RAB-9, RAB9, RAS-relate 96.0 0.0045 1.5E-07 49.6 3.6 25 73-97 6-30 (177)
309 2atv_A RERG, RAS-like estrogen 96.0 0.005 1.7E-07 50.6 3.9 27 71-97 25-51 (196)
310 3pqc_A Probable GTP-binding pr 96.0 0.0056 1.9E-07 49.7 4.2 26 72-97 21-46 (195)
311 2ged_A SR-beta, signal recogni 96.0 0.005 1.7E-07 50.3 3.9 25 73-97 47-71 (193)
312 2d2e_A SUFC protein; ABC-ATPas 96.0 0.0039 1.3E-07 54.3 3.4 24 74-97 29-52 (250)
313 4dsu_A GTPase KRAS, isoform 2B 96.0 0.0046 1.6E-07 50.0 3.6 25 73-97 3-27 (189)
314 3sop_A Neuronal-specific septi 96.0 0.0046 1.6E-07 54.6 3.9 24 75-98 3-26 (270)
315 1ek0_A Protein (GTP-binding pr 96.0 0.0045 1.5E-07 48.9 3.5 24 74-97 3-26 (170)
316 1ypw_A Transitional endoplasmi 96.0 0.0021 7.1E-08 65.4 1.8 32 73-104 510-541 (806)
317 1z08_A RAS-related protein RAB 96.0 0.0047 1.6E-07 49.0 3.6 25 73-97 5-29 (170)
318 2ff7_A Alpha-hemolysin translo 96.0 0.0034 1.1E-07 54.7 2.9 25 74-98 35-59 (247)
319 1u0j_A DNA replication protein 96.0 0.0053 1.8E-07 54.2 4.2 27 74-100 104-130 (267)
320 1r6b_X CLPA protein; AAA+, N-t 96.0 0.0054 1.8E-07 61.7 4.8 29 75-103 489-517 (758)
321 1ji0_A ABC transporter; ATP bi 96.0 0.0034 1.2E-07 54.4 2.9 25 74-98 32-56 (240)
322 2qm8_A GTPase/ATPase; G protei 96.0 0.0053 1.8E-07 56.0 4.3 26 73-98 54-79 (337)
323 1g6h_A High-affinity branched- 95.9 0.0035 1.2E-07 54.9 2.9 26 73-98 32-57 (257)
324 3fvq_A Fe(3+) IONS import ATP- 95.9 0.004 1.4E-07 57.4 3.3 25 74-98 30-54 (359)
325 1svi_A GTP-binding protein YSX 95.9 0.0055 1.9E-07 50.0 3.9 25 72-96 21-45 (195)
326 3jvv_A Twitching mobility prot 95.9 0.0057 1.9E-07 56.3 4.4 25 74-98 123-147 (356)
327 2gj8_A MNME, tRNA modification 95.9 0.0051 1.7E-07 49.8 3.6 25 73-97 3-27 (172)
328 3q72_A GTP-binding protein RAD 95.9 0.0048 1.6E-07 48.8 3.3 22 74-95 2-23 (166)
329 3bc1_A RAS-related protein RAB 95.9 0.0054 1.8E-07 49.6 3.7 24 73-96 10-33 (195)
330 1z0j_A RAB-22, RAS-related pro 95.9 0.005 1.7E-07 48.7 3.5 25 73-97 5-29 (170)
331 2olj_A Amino acid ABC transpor 95.9 0.0042 1.4E-07 54.8 3.2 26 73-98 49-74 (263)
332 3con_A GTPase NRAS; structural 95.9 0.0052 1.8E-07 50.0 3.6 25 73-97 20-44 (190)
333 2pze_A Cystic fibrosis transme 95.9 0.0038 1.3E-07 53.7 2.9 25 74-98 34-58 (229)
334 2ixe_A Antigen peptide transpo 95.9 0.0042 1.4E-07 54.9 3.2 26 73-98 44-69 (271)
335 2ghi_A Transport protein; mult 95.9 0.0043 1.5E-07 54.5 3.2 26 73-98 45-70 (260)
336 1sgw_A Putative ABC transporte 95.9 0.0034 1.1E-07 53.6 2.4 25 74-98 35-59 (214)
337 2www_A Methylmalonic aciduria 95.9 0.0077 2.6E-07 55.1 5.0 26 73-98 73-98 (349)
338 2p5s_A RAS and EF-hand domain 95.9 0.0058 2E-07 50.4 3.9 27 71-97 25-51 (199)
339 2zu0_C Probable ATP-dependent 95.9 0.0052 1.8E-07 54.1 3.7 25 73-97 45-69 (267)
340 1nlf_A Regulatory protein REPA 95.8 0.0054 1.8E-07 53.9 3.7 25 73-97 29-53 (279)
341 1m7b_A RND3/RHOE small GTP-bin 95.8 0.0058 2E-07 49.7 3.7 26 72-97 5-30 (184)
342 2bov_A RAla, RAS-related prote 95.8 0.0066 2.3E-07 49.9 4.1 25 73-97 13-37 (206)
343 1r2q_A RAS-related protein RAB 95.8 0.0056 1.9E-07 48.4 3.5 24 73-96 5-28 (170)
344 3q85_A GTP-binding protein REM 95.8 0.0059 2E-07 48.5 3.6 23 74-96 2-24 (169)
345 2b8t_A Thymidine kinase; deoxy 95.8 0.0067 2.3E-07 52.1 4.2 26 73-98 11-36 (223)
346 1zu4_A FTSY; GTPase, signal re 95.8 0.0067 2.3E-07 55.0 4.4 27 72-98 103-129 (320)
347 2f7s_A C25KG, RAS-related prot 95.8 0.0058 2E-07 51.0 3.7 24 73-96 24-47 (217)
348 2qi9_C Vitamin B12 import ATP- 95.8 0.0042 1.4E-07 54.2 2.9 25 74-98 26-50 (249)
349 2ihy_A ABC transporter, ATP-bi 95.8 0.0042 1.4E-07 55.2 2.9 26 73-98 46-71 (279)
350 3rlf_A Maltose/maltodextrin im 95.8 0.0048 1.6E-07 57.3 3.4 26 73-98 28-53 (381)
351 3tw8_B RAS-related protein RAB 95.8 0.0056 1.9E-07 49.0 3.4 24 73-96 8-31 (181)
352 2y8e_A RAB-protein 6, GH09086P 95.8 0.0059 2E-07 48.7 3.6 24 73-96 13-36 (179)
353 1vpl_A ABC transporter, ATP-bi 95.8 0.0049 1.7E-07 54.1 3.2 26 73-98 40-65 (256)
354 1fzq_A ADP-ribosylation factor 95.8 0.0065 2.2E-07 49.4 3.8 26 72-97 14-39 (181)
355 1yrb_A ATP(GTP)binding protein 95.8 0.0098 3.3E-07 51.3 5.0 27 72-98 12-38 (262)
356 1z47_A CYSA, putative ABC-tran 95.8 0.0053 1.8E-07 56.5 3.4 25 74-98 41-65 (355)
357 2bme_A RAB4A, RAS-related prot 95.8 0.0062 2.1E-07 49.2 3.5 25 73-97 9-33 (186)
358 2a9k_A RAS-related protein RAL 95.7 0.007 2.4E-07 48.7 3.8 25 73-97 17-41 (187)
359 1moz_A ARL1, ADP-ribosylation 95.7 0.0049 1.7E-07 49.7 2.9 24 72-95 16-39 (183)
360 2yz2_A Putative ABC transporte 95.7 0.0053 1.8E-07 54.0 3.2 26 73-98 32-57 (266)
361 2gza_A Type IV secretion syste 95.7 0.0041 1.4E-07 57.3 2.5 26 74-99 175-200 (361)
362 1pui_A ENGB, probable GTP-bind 95.7 0.0037 1.3E-07 51.9 2.1 25 72-96 24-48 (210)
363 3llu_A RAS-related GTP-binding 95.7 0.0042 1.4E-07 51.2 2.4 27 71-97 17-43 (196)
364 2il1_A RAB12; G-protein, GDP, 95.7 0.0065 2.2E-07 49.9 3.6 25 72-96 24-48 (192)
365 2yyz_A Sugar ABC transporter, 95.7 0.0063 2.2E-07 56.1 3.7 26 73-98 28-53 (359)
366 2gf0_A GTP-binding protein DI- 95.7 0.0083 2.9E-07 49.0 4.1 24 73-96 7-30 (199)
367 2vhj_A Ntpase P4, P4; non- hyd 95.7 0.0068 2.3E-07 55.1 3.8 31 75-105 124-156 (331)
368 2nq2_C Hypothetical ABC transp 95.7 0.005 1.7E-07 53.8 2.8 25 74-98 31-55 (253)
369 3nbx_X ATPase RAVA; AAA+ ATPas 95.7 0.0036 1.2E-07 60.2 2.1 24 76-99 43-66 (500)
370 2it1_A 362AA long hypothetical 95.7 0.0065 2.2E-07 56.0 3.7 26 73-98 28-53 (362)
371 3cbq_A GTP-binding protein REM 95.7 0.0055 1.9E-07 50.7 2.9 23 73-95 22-44 (195)
372 1g29_1 MALK, maltose transport 95.7 0.006 2E-07 56.5 3.4 25 74-98 29-53 (372)
373 3tkl_A RAS-related protein RAB 95.6 0.0087 3E-07 48.8 4.0 25 73-97 15-39 (196)
374 2b6h_A ADP-ribosylation factor 95.6 0.0083 2.8E-07 49.3 3.9 27 70-96 25-51 (192)
375 1v43_A Sugar-binding transport 95.6 0.0069 2.4E-07 56.1 3.7 26 73-98 36-61 (372)
376 2j0v_A RAC-like GTP-binding pr 95.6 0.01 3.5E-07 49.3 4.5 27 71-97 6-32 (212)
377 4gzl_A RAS-related C3 botulinu 95.6 0.0082 2.8E-07 49.9 3.8 25 72-96 28-52 (204)
378 2pjz_A Hypothetical protein ST 95.6 0.0057 2E-07 53.8 2.9 25 74-98 30-54 (263)
379 1zj6_A ADP-ribosylation factor 95.6 0.0092 3.1E-07 48.5 4.0 25 72-96 14-38 (187)
380 3lxx_A GTPase IMAP family memb 95.6 0.0076 2.6E-07 51.5 3.6 25 72-96 27-51 (239)
381 1r8s_A ADP-ribosylation factor 95.6 0.0089 3E-07 47.1 3.7 23 75-97 1-23 (164)
382 1ksh_A ARF-like protein 2; sma 95.6 0.0082 2.8E-07 48.6 3.6 25 72-96 16-40 (186)
383 3pxi_A Negative regulator of g 95.6 0.0087 3E-07 60.2 4.5 33 76-108 523-560 (758)
384 1mh1_A RAC1; GTP-binding, GTPa 95.6 0.0094 3.2E-07 47.9 3.9 24 73-96 4-27 (186)
385 1vg8_A RAS-related protein RAB 95.6 0.0086 2.9E-07 49.3 3.8 25 73-97 7-31 (207)
386 1m2o_B GTP-binding protein SAR 95.6 0.0079 2.7E-07 49.4 3.5 25 73-97 22-46 (190)
387 1p9r_A General secretion pathw 95.6 0.0096 3.3E-07 56.0 4.5 27 73-99 166-192 (418)
388 4dey_A Voltage-dependent L-typ 95.5 0.088 3E-06 47.8 10.6 151 77-279 145-321 (337)
389 2fg5_A RAB-22B, RAS-related pr 95.5 0.0082 2.8E-07 49.2 3.5 25 73-97 22-46 (192)
390 2o52_A RAS-related protein RAB 95.5 0.0081 2.8E-07 49.7 3.5 25 72-96 23-47 (200)
391 3lxw_A GTPase IMAP family memb 95.5 0.0081 2.8E-07 52.0 3.6 24 73-96 20-43 (247)
392 3reg_A RHO-like small GTPase; 95.5 0.0087 3E-07 49.0 3.6 26 72-97 21-46 (194)
393 1pzn_A RAD51, DNA repair and r 95.5 0.0089 3.1E-07 54.7 4.1 26 73-98 130-155 (349)
394 3kta_A Chromosome segregation 95.5 0.0093 3.2E-07 48.5 3.8 24 76-99 28-51 (182)
395 3gd7_A Fusion complex of cysti 95.5 0.007 2.4E-07 56.4 3.3 25 73-97 46-70 (390)
396 1x3s_A RAS-related protein RAB 95.5 0.0075 2.6E-07 49.0 3.1 25 73-97 14-38 (195)
397 3hr8_A Protein RECA; alpha and 95.5 0.0095 3.3E-07 54.8 4.1 33 73-105 60-97 (356)
398 2v3c_C SRP54, signal recogniti 95.5 0.0063 2.2E-07 57.5 2.9 26 73-98 98-123 (432)
399 2q3h_A RAS homolog gene family 95.5 0.0095 3.2E-07 49.0 3.7 25 72-96 18-42 (201)
400 2qu8_A Putative nucleolar GTP- 95.4 0.012 4E-07 49.8 4.3 25 72-96 27-51 (228)
401 3d31_A Sulfate/molybdate ABC t 95.4 0.0058 2E-07 56.1 2.5 26 73-98 25-50 (348)
402 3dz8_A RAS-related protein RAB 95.4 0.01 3.6E-07 48.4 3.8 26 73-98 22-47 (191)
403 2fh5_B SR-beta, signal recogni 95.4 0.0093 3.2E-07 49.6 3.6 25 73-97 6-30 (214)
404 1xx6_A Thymidine kinase; NESG, 95.4 0.015 5.2E-07 48.6 4.9 26 73-98 7-32 (191)
405 1qvr_A CLPB protein; coiled co 95.4 0.0069 2.4E-07 61.9 3.3 24 75-98 192-215 (854)
406 3tui_C Methionine import ATP-b 95.4 0.0091 3.1E-07 55.1 3.7 26 73-98 53-78 (366)
407 3cph_A RAS-related protein SEC 95.4 0.011 3.7E-07 48.9 3.9 24 73-96 19-42 (213)
408 3k53_A Ferrous iron transport 95.4 0.0094 3.2E-07 52.2 3.6 24 74-97 3-26 (271)
409 2bbs_A Cystic fibrosis transme 95.4 0.0078 2.7E-07 53.7 3.1 26 73-98 63-88 (290)
410 1f6b_A SAR1; gtpases, N-termin 95.4 0.0097 3.3E-07 49.2 3.5 24 73-96 24-47 (198)
411 2fna_A Conserved hypothetical 95.4 0.013 4.3E-07 52.4 4.5 31 75-105 31-63 (357)
412 2cxx_A Probable GTP-binding pr 95.4 0.0089 3E-07 48.4 3.2 23 75-97 2-24 (190)
413 2r8r_A Sensor protein; KDPD, P 95.4 0.014 4.7E-07 50.4 4.5 26 73-98 5-30 (228)
414 2p67_A LAO/AO transport system 95.4 0.011 3.8E-07 53.7 4.2 26 73-98 55-80 (341)
415 1zbd_A Rabphilin-3A; G protein 95.4 0.012 4E-07 48.5 3.9 24 73-96 7-30 (203)
416 1gwn_A RHO-related GTP-binding 95.4 0.011 3.7E-07 49.4 3.7 25 73-97 27-51 (205)
417 2j37_W Signal recognition part 95.4 0.011 3.8E-07 56.9 4.2 27 72-98 99-125 (504)
418 3nh6_A ATP-binding cassette SU 95.3 0.0057 2E-07 55.1 1.9 26 73-98 79-104 (306)
419 2xtp_A GTPase IMAP family memb 95.3 0.011 3.7E-07 51.2 3.7 26 72-97 20-45 (260)
420 2ew1_A RAS-related protein RAB 95.3 0.011 3.7E-07 49.3 3.5 25 73-97 25-49 (201)
421 3k1j_A LON protease, ATP-depen 95.3 0.0084 2.9E-07 58.9 3.2 25 75-99 61-85 (604)
422 2npi_A Protein CLP1; CLP1-PCF1 95.3 0.0087 3E-07 56.9 3.2 26 73-98 137-162 (460)
423 2bcg_Y Protein YP2, GTP-bindin 95.3 0.011 3.8E-07 48.8 3.5 25 73-97 7-31 (206)
424 2gco_A H9, RHO-related GTP-bin 95.3 0.012 4.1E-07 48.6 3.7 26 72-97 23-48 (201)
425 2pt7_A CAG-ALFA; ATPase, prote 95.3 0.0058 2E-07 55.6 1.9 25 74-98 171-195 (330)
426 2atx_A Small GTP binding prote 95.3 0.01 3.6E-07 48.4 3.2 25 73-97 17-41 (194)
427 2cjw_A GTP-binding protein GEM 95.2 0.014 4.8E-07 48.1 3.9 25 73-97 5-29 (192)
428 2hup_A RAS-related protein RAB 95.2 0.013 4.3E-07 48.6 3.7 25 72-96 27-51 (201)
429 1nij_A Hypothetical protein YJ 95.2 0.01 3.4E-07 53.5 3.3 24 74-97 4-27 (318)
430 2j1l_A RHO-related GTP-binding 95.2 0.012 4.3E-07 49.1 3.6 24 73-96 33-56 (214)
431 1ojl_A Transcriptional regulat 95.2 0.011 3.8E-07 52.9 3.5 24 75-98 26-49 (304)
432 1oxx_K GLCV, glucose, ABC tran 95.2 0.0061 2.1E-07 56.0 1.8 26 73-98 30-55 (353)
433 1ls1_A Signal recognition part 95.2 0.015 5E-07 52.0 4.2 26 73-98 97-122 (295)
434 3lda_A DNA repair protein RAD5 95.2 0.01 3.6E-07 55.4 3.3 23 74-96 178-200 (400)
435 2zts_A Putative uncharacterize 95.1 0.015 5E-07 49.4 3.9 23 74-96 30-52 (251)
436 1w5s_A Origin recognition comp 95.1 0.012 4E-07 54.0 3.5 25 74-98 50-76 (412)
437 2fv8_A H6, RHO-related GTP-bin 95.1 0.013 4.3E-07 48.7 3.4 25 73-97 24-48 (207)
438 1qvr_A CLPB protein; coiled co 95.1 0.01 3.6E-07 60.5 3.4 24 75-98 589-612 (854)
439 1zcb_A G alpha I/13; GTP-bindi 95.1 0.013 4.5E-07 53.9 3.8 27 72-98 31-57 (362)
440 1r6b_X CLPA protein; AAA+, N-t 95.1 0.015 5.1E-07 58.4 4.4 26 73-98 206-231 (758)
441 2zr9_A Protein RECA, recombina 95.1 0.014 4.8E-07 53.4 3.8 33 73-105 60-97 (349)
442 2x77_A ADP-ribosylation factor 95.0 0.011 3.8E-07 48.1 2.8 24 72-95 20-43 (189)
443 2g3y_A GTP-binding protein GEM 95.0 0.016 5.3E-07 49.1 3.7 24 73-96 36-59 (211)
444 2fu5_C RAS-related protein RAB 95.0 0.008 2.7E-07 48.5 1.8 24 73-96 7-30 (183)
445 3gj0_A GTP-binding nuclear pro 95.0 0.019 6.7E-07 48.0 4.3 27 72-98 13-40 (221)
446 3cpj_B GTP-binding protein YPT 95.0 0.016 5.5E-07 48.7 3.8 26 72-97 11-36 (223)
447 1v5w_A DMC1, meiotic recombina 95.0 0.016 5.5E-07 52.8 4.0 25 73-97 121-145 (343)
448 3q3j_B RHO-related GTP-binding 95.0 0.017 5.8E-07 48.4 3.9 25 73-97 26-50 (214)
449 2xxa_A Signal recognition part 95.0 0.018 6.2E-07 54.3 4.4 27 72-98 98-124 (433)
450 2oap_1 GSPE-2, type II secreti 95.0 0.0097 3.3E-07 57.4 2.5 25 74-98 260-284 (511)
451 2rcn_A Probable GTPase ENGC; Y 95.0 0.014 4.7E-07 53.8 3.4 23 75-97 216-238 (358)
452 1j8m_F SRP54, signal recogniti 94.9 0.013 4.6E-07 52.3 3.3 25 74-98 98-122 (297)
453 2yv5_A YJEQ protein; hydrolase 94.9 0.014 4.9E-07 52.2 3.4 24 74-98 165-188 (302)
454 3a1s_A Iron(II) transport prot 94.9 0.015 5.2E-07 50.7 3.5 24 73-96 4-27 (258)
455 3b1v_A Ferrous iron uptake tra 94.9 0.017 5.8E-07 51.0 3.7 24 74-97 3-26 (272)
456 1tq4_A IIGP1, interferon-induc 94.9 0.016 5.5E-07 54.3 3.7 24 74-97 69-92 (413)
457 2qnr_A Septin-2, protein NEDD5 94.8 0.015 5.2E-07 52.0 3.2 25 72-96 16-40 (301)
458 1u0l_A Probable GTPase ENGC; p 94.8 0.013 4.6E-07 52.3 2.7 23 74-96 169-191 (301)
459 2z43_A DNA repair and recombin 94.7 0.019 6.5E-07 51.7 3.7 25 74-98 107-131 (324)
460 1u94_A RECA protein, recombina 94.7 0.021 7.1E-07 52.5 3.9 33 73-105 62-99 (356)
461 4dhe_A Probable GTP-binding pr 94.7 0.011 3.6E-07 49.5 1.8 26 72-97 27-52 (223)
462 3upu_A ATP-dependent DNA helic 94.7 0.019 6.5E-07 54.3 3.8 23 76-98 47-69 (459)
463 2qag_B Septin-6, protein NEDD5 94.7 0.016 5.6E-07 54.5 3.1 23 75-97 43-65 (427)
464 1ko7_A HPR kinase/phosphatase; 94.7 0.019 6.4E-07 51.9 3.4 31 74-105 144-174 (314)
465 1ega_A Protein (GTP-binding pr 94.7 0.018 6.1E-07 51.4 3.3 25 73-97 7-31 (301)
466 2ffh_A Protein (FFH); SRP54, s 94.6 0.024 8.1E-07 53.4 4.2 26 73-98 97-122 (425)
467 3ozx_A RNAse L inhibitor; ATP 94.6 0.022 7.7E-07 55.2 4.1 31 68-98 19-49 (538)
468 2i1q_A DNA repair and recombin 94.6 0.021 7.2E-07 51.2 3.7 25 73-97 97-121 (322)
469 3e1s_A Exodeoxyribonuclease V, 94.5 0.022 7.5E-07 55.6 3.9 25 74-98 204-228 (574)
470 3bh0_A DNAB-like replicative h 94.5 0.027 9.1E-07 50.6 4.1 26 73-98 67-92 (315)
471 3i8s_A Ferrous iron transport 94.5 0.024 8.3E-07 49.8 3.7 24 74-97 3-26 (274)
472 3iev_A GTP-binding protein ERA 94.5 0.024 8.1E-07 50.8 3.6 25 73-97 9-33 (308)
473 4djt_A GTP-binding nuclear pro 94.4 0.01 3.5E-07 49.5 1.1 25 72-96 9-33 (218)
474 3f9v_A Minichromosome maintena 94.4 0.0078 2.7E-07 59.1 0.4 27 76-102 329-355 (595)
475 3iby_A Ferrous iron transport 94.4 0.023 7.9E-07 49.5 3.3 23 75-97 2-24 (256)
476 2yc2_C IFT27, small RAB-relate 94.4 0.0076 2.6E-07 49.5 0.2 25 73-97 19-43 (208)
477 1tf7_A KAIC; homohexamer, hexa 94.4 0.024 8.3E-07 54.5 3.7 22 73-94 38-59 (525)
478 3euj_A Chromosome partition pr 94.4 0.026 8.7E-07 54.0 3.8 24 75-98 30-53 (483)
479 2j9r_A Thymidine kinase; TK1, 94.3 0.043 1.5E-06 46.8 4.8 26 73-98 27-52 (214)
480 1yqt_A RNAse L inhibitor; ATP- 94.3 0.023 7.7E-07 55.1 3.4 26 73-98 46-71 (538)
481 2dpy_A FLII, flagellum-specifi 94.3 0.027 9.2E-07 53.2 3.7 28 72-99 155-182 (438)
482 1mky_A Probable GTP-binding pr 94.2 0.032 1.1E-06 52.4 4.1 25 73-97 179-203 (439)
483 1knx_A Probable HPR(Ser) kinas 94.2 0.022 7.5E-07 51.4 2.8 31 74-105 147-177 (312)
484 2r6a_A DNAB helicase, replicat 94.2 0.033 1.1E-06 52.6 4.1 26 73-98 202-227 (454)
485 3th5_A RAS-related C3 botulinu 93.2 0.0085 2.9E-07 49.5 0.0 26 71-96 27-52 (204)
486 2obl_A ESCN; ATPase, hydrolase 94.1 0.031 1.1E-06 51.1 3.7 27 73-99 70-96 (347)
487 3b5x_A Lipid A export ATP-bind 94.1 0.024 8.1E-07 55.4 3.0 26 73-98 368-393 (582)
488 2qag_C Septin-7; cell cycle, c 94.1 0.032 1.1E-06 52.4 3.8 27 71-97 28-54 (418)
489 3t5d_A Septin-7; GTP-binding p 94.1 0.03 1E-06 49.1 3.3 23 73-95 7-29 (274)
490 3b60_A Lipid A export ATP-bind 94.1 0.023 7.7E-07 55.5 2.8 26 73-98 368-393 (582)
491 3r7w_A Gtpase1, GTP-binding pr 93.9 0.037 1.3E-06 49.4 3.7 25 73-97 2-26 (307)
492 4dkx_A RAS-related protein RAB 93.9 0.042 1.4E-06 46.6 3.9 24 73-96 12-35 (216)
493 1tf7_A KAIC; homohexamer, hexa 93.9 0.035 1.2E-06 53.5 3.7 25 74-98 281-305 (525)
494 1ni3_A YCHF GTPase, YCHF GTP-b 93.9 0.037 1.3E-06 51.5 3.7 24 73-96 19-42 (392)
495 1f2t_A RAD50 ABC-ATPase; DNA d 93.9 0.043 1.5E-06 43.7 3.7 25 74-98 23-47 (149)
496 3cmu_A Protein RECA, recombina 93.8 0.081 2.8E-06 58.5 6.8 73 73-148 1426-1514(2050)
497 1t9h_A YLOQ, probable GTPase E 93.8 0.013 4.3E-07 52.9 0.5 23 74-96 173-195 (307)
498 3ozx_A RNAse L inhibitor; ATP 93.8 0.027 9.4E-07 54.5 2.9 25 74-98 294-318 (538)
499 3c5h_A Glucocorticoid receptor 93.8 0.058 2E-06 46.7 4.7 25 72-96 17-50 (255)
500 1h65_A Chloroplast outer envel 93.8 0.042 1.4E-06 47.9 3.8 24 73-96 38-61 (270)
No 1
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=100.00 E-value=6.1e-38 Score=271.54 Aligned_cols=181 Identities=39% Similarity=0.698 Sum_probs=162.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhCCCeeehHHHH--------------HHHHHcCCccCHHHHHHHHHHHHHcccccCC
Q 022951 75 VQWVFLGCPGVGKGTYASRLSNLLGVPHIATGDLL--------------DEIVSQGKLVSDEIIINLLSKRLEAGEAKGE 140 (289)
Q Consensus 75 ~~Ivl~GppGsGKSTlak~La~~lg~~~i~~d~l~--------------~~~l~~g~~v~~~~~~~ll~~~l~~~~~~~~ 140 (289)
|+|+|+|||||||+|+|+.|+++||++||++++++ +.++..|..+|++++..++.+++.. .
T Consensus 1 M~Iil~GpPGsGKgTqa~~La~~~g~~~istGdllR~~i~~~t~lg~~~~~~~~~G~lvpd~iv~~lv~~~l~~-----~ 75 (206)
T 3sr0_A 1 MILVFLGPPGAGKGTQAKRLAKEKGFVHISTGDILREAVQKGTPLGKKAKEYMERGELVPDDLIIALIEEVFPK-----H 75 (206)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHHTCHHHHHHHHHHHHTCCCCHHHHHHHHHHHCCS-----S
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHCCeEEcHHHHHHHHHHhcChhhhhHHHHHhcCCcCCHHHHHHHHHHhhcc-----C
Confidence 78999999999999999999999999999999998 4567889999999999999988754 3
Q ss_pred ceEEEcCcccH----HHHhhc-----CCCcEEEEEecCHHHHHHHHhcccccccCCCccccccccccCCCCCCCCCCCCC
Q 022951 141 AGFILDGFPRT----EILEGV-----TDIDLVINLKLREEALLAKCLGRRICSECGGNYNVACIDIKGENGNPGMYMGPL 211 (289)
Q Consensus 141 ~g~Ildg~p~~----~~l~~~-----~~~d~vI~Ld~~~e~l~~Rl~~R~~~~~~g~~y~~~~~~~~~~~~~~~~~~~~~ 211 (289)
.+||+||||++ +.|+.+ ..++.||+|++|.+++++|+.+|+.|+.||..||.. +
T Consensus 76 ~~~ilDGfPRt~~Qa~~l~~~l~~~~~~~~~vi~l~v~~e~l~~Rl~~R~~~~~~g~~y~~~-----------------~ 138 (206)
T 3sr0_A 76 GNVIFDGFPRTVKQAEALDEMLEKKGLKVDHVLLFEVPDEVVIERLSGRRINPETGEVYHVK-----------------Y 138 (206)
T ss_dssp SCEEEESCCCSHHHHHHHHHHHHHTTCCCCEEEEEECCHHHHHHHHHTEEECTTTCCEEETT-----------------T
T ss_pred CceEecCCchhHHHHHHHHhhHHHhccccceeeecCCCHHHHHHHHhCCccccCCCceeeee-----------------c
Confidence 48999999999 333221 358999999999999999999999999999999985 3
Q ss_pred CCCCccccCccccCCCcHHHHHHHHHHHHHhchHHHHHHHHcCcEEEEeCCCCcccHHHHHHHHhcc
Q 022951 212 LPPPHCASKLITRSDDKEEVVRERLRIYNEKSRPVEEFYRRRGKLLEFDLPGGIPESWPKLLQALNL 278 (289)
Q Consensus 212 ~~~~~~~~~L~~r~~d~~~~~~~rl~~y~~~~~~l~~~y~~~~~l~~id~~~~~~ev~~~i~~~l~~ 278 (289)
.| |.|+.+|++|.||+++.+++|++.|++++.|+.+||.+.++++.||+++++++||++|.++|..
T Consensus 139 ~p-p~~g~~l~~r~DD~~e~i~~Rl~~Y~~~t~pl~~~Y~~~~~l~~Idg~~~~~eV~~~I~~~l~e 204 (206)
T 3sr0_A 139 NP-PPPGVKVIQREDDKPEVIKKRLEVYREQTAPLIEYYKKKGILRIIDASKPVEEVYRQVLEVIGD 204 (206)
T ss_dssp BC-CCTTCCCBCCGGGSHHHHHHHHHHHHHHTTHHHHHHHTTTCEEEEETTSCHHHHHHHHHHHHC-
T ss_pred cC-CCCCceecccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEECCCCHHHHHHHHHHHHcc
Confidence 33 3478899999999999999999999999999999999999999999999999999999999974
No 2
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=100.00 E-value=1.7e-36 Score=265.68 Aligned_cols=192 Identities=32% Similarity=0.630 Sum_probs=150.3
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhCCCeeehHHHHH--------------HHHHcCCccCHHHHHHHHHHHHHccccc
Q 022951 73 KHVQWVFLGCPGVGKGTYASRLSNLLGVPHIATGDLLD--------------EIVSQGKLVSDEIIINLLSKRLEAGEAK 138 (289)
Q Consensus 73 ~~~~Ivl~GppGsGKSTlak~La~~lg~~~i~~d~l~~--------------~~l~~g~~v~~~~~~~ll~~~l~~~~~~ 138 (289)
..|.+.|+|+|||||||+|+.|+++||++|++++++++ +++.+|..+|++++..++.+++....+
T Consensus 7 ~~~~~~~~G~pGsGKsT~a~~L~~~~g~~~is~gdllR~~~~~~t~lG~~i~~~~~~G~lvpdei~~~ll~~~l~~~~~- 85 (230)
T 3gmt_A 7 HHMRLILLGAPGAGKGTQANFIKEKFGIPQISTGDMLRAAVKAGTPLGVEAKTYMDEGKLVPDSLIIGLVKERLKEADC- 85 (230)
T ss_dssp --CEEEEECCTTSCHHHHHHHHHHHHTCCEECHHHHHHHHHHTTCHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHSGGG-
T ss_pred cccceeeECCCCCCHHHHHHHHHHHhCCCeeechHHHHHhccCCChHHHHHHHHHhhccccccHHHHHHHHHHHhCccc-
Confidence 46899999999999999999999999999999999883 467789999999999999999987654
Q ss_pred CCceEEEcCcccH----HHHhhc-CCCcEEEEEecCHHHHHHHHhcccccccCCCccccccccccCCCCCCCCCCCCCCC
Q 022951 139 GEAGFILDGFPRT----EILEGV-TDIDLVINLKLREEALLAKCLGRRICSECGGNYNVACIDIKGENGNPGMYMGPLLP 213 (289)
Q Consensus 139 ~~~g~Ildg~p~~----~~l~~~-~~~d~vI~Ld~~~e~l~~Rl~~R~~~~~~g~~y~~~~~~~~~~~~~~~~~~~~~~~ 213 (289)
..||||||||++ +.|+.. ..+|.||+|++|++++++|+.+|++|+.||+.||+. |+||-.+
T Consensus 86 -~~g~ILDGfPRt~~Qa~~L~~~~~~~d~VI~Ldvp~e~l~~Rl~~R~~~~~~G~~Yh~~-------------~~pp~~~ 151 (230)
T 3gmt_A 86 -ANGYLFDGFPRTIAQADAMKEAGVAIDYVLEIDVPFSEIIERMSGRRTHPASGRTYHVK-------------FNPPKVE 151 (230)
T ss_dssp -TTCEEEESCCCSHHHHHHHHHTTCCCSEEEEECCCHHHHHHHHHTEEEETTTTEEEETT-------------TBCCSST
T ss_pred -CCCeEecCCCCcHHHHHHHHHhCCCccEEEEEeCCHHHHHHHHHcCCcccccCCccccc-------------CCCCCcc
Confidence 359999999999 334432 358999999999999999999999999999999996 2232211
Q ss_pred --CCccccCccccCCCcHHHHHHHHHHHHHhchHHHHHHHHc-----------CcEEEEeCCCCcccHHHHHHHHhccC
Q 022951 214 --PPHCASKLITRSDDKEEVVRERLRIYNEKSRPVEEFYRRR-----------GKLLEFDLPGGIPESWPKLLQALNLE 279 (289)
Q Consensus 214 --~~~~~~~L~~r~~d~~~~~~~rl~~y~~~~~~l~~~y~~~-----------~~l~~id~~~~~~ev~~~i~~~l~~~ 279 (289)
+..|+++|++|.||+++.+++||+.|+++..|+++||.+. ++++.||+++++++|+.+|.++|.++
T Consensus 152 ~~~d~~g~~L~~R~DD~~e~i~~Rl~~y~~~t~pl~~~Y~~~~~~~~~~~~~~~~l~~idg~~~~~eV~~~i~~~l~~~ 230 (230)
T 3gmt_A 152 GKDDVTGEPLVQRDDDKEETVKKRLDVYEAQTKPLITYYGDWARRGAENGLKAPAYRKISGLGAVEEIRARVRRAQVSE 230 (230)
T ss_dssp TBCTTTCCBCBCCGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCBTTBCCCEEEEECC------------------
T ss_pred CcCCCccCccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccCCeEEEEECCCCHHHHHHHHHHHHhcC
Confidence 2367899999999999999999999999999999999873 78999999999999999999988754
No 3
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=100.00 E-value=2.3e-33 Score=244.42 Aligned_cols=168 Identities=32% Similarity=0.542 Sum_probs=146.2
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHHHhCCCeeehHHHH--------------HHHHHcCCccCHHHHHHHHHHHHHcccc
Q 022951 72 GKHVQWVFLGCPGVGKGTYASRLSNLLGVPHIATGDLL--------------DEIVSQGKLVSDEIIINLLSKRLEAGEA 137 (289)
Q Consensus 72 ~~~~~Ivl~GppGsGKSTlak~La~~lg~~~i~~d~l~--------------~~~l~~g~~v~~~~~~~ll~~~l~~~~~ 137 (289)
.++.+|+|+|||||||+|+|+.|+++||++||++++++ +.+++.|..+|++++..++.+++.....
T Consensus 27 ~k~kiI~llGpPGsGKgTqa~~L~~~~g~~hIstGdllR~~i~~~t~lg~~~~~~~~~G~lVpde~~~~lv~~~l~~~~~ 106 (217)
T 3umf_A 27 AKAKVIFVLGGPGSGKGTQCEKLVQKFHFNHLSSGDLLRAEVQSGSPKGKELKAMMERGELVPLEVVLALLKEAMIKLVD 106 (217)
T ss_dssp TSCEEEEEECCTTCCHHHHHHHHHHHHCCEEECHHHHHHHHHTTCCHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHTT
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHHCCceEcHHHHHHHHHHcCCchHHHHHHHHhcCCCCCHHHHHHHHHHHHhhccc
Confidence 35678899999999999999999999999999999999 4567889999999999999998876444
Q ss_pred cCCceEEEcCcccH----HHHh-hcCCCcEEEEEecCHHHHHHHHhcccccccCCCccccccccccCCCCCCCCCCCCCC
Q 022951 138 KGEAGFILDGFPRT----EILE-GVTDIDLVINLKLREEALLAKCLGRRICSECGGNYNVACIDIKGENGNPGMYMGPLL 212 (289)
Q Consensus 138 ~~~~g~Ildg~p~~----~~l~-~~~~~d~vI~Ld~~~e~l~~Rl~~R~~~~~~g~~y~~~~~~~~~~~~~~~~~~~~~~ 212 (289)
. ..|||+||||++ +.|+ .+..++.+|+|++|.+++.+|+.+|..+
T Consensus 107 ~-~~g~ilDGfPRt~~Qa~~l~~~~~~~~~vi~l~v~~e~~~~Rl~~R~~~----------------------------- 156 (217)
T 3umf_A 107 K-NCHFLIDGYPRELDQGIKFEKEVCPCLCVINFDVSEEVMRKRLLKRAET----------------------------- 156 (217)
T ss_dssp T-CSEEEEETBCSSHHHHHHHHHHTCCCSEEEEEECCHHHHHHHHSCC--------------------------------
T ss_pred c-ccCcccccCCCcHHHHHHHHHhCCccCEEEeccCCHHHHHHHHhccccc-----------------------------
Confidence 3 569999999999 3343 3457899999999999999999999632
Q ss_pred CCCccccCccccCCCcHHHHHHHHHHHHHhchHHHHHHHHcCcEEEEeCCCCcccHHHHHHHHhcc
Q 022951 213 PPPHCASKLITRSDDKEEVVRERLRIYNEKSRPVEEFYRRRGKLLEFDLPGGIPESWPKLLQALNL 278 (289)
Q Consensus 213 ~~~~~~~~L~~r~~d~~~~~~~rl~~y~~~~~~l~~~y~~~~~l~~id~~~~~~ev~~~i~~~l~~ 278 (289)
.+|.||+++.+++|++.|+++..|+++||.+.++++.||+++++++||++|.++|+.
T Consensus 157 ---------~~R~DD~~e~i~~Rl~~Y~~~t~pl~~~Y~~~~~l~~Idg~~~~eeV~~~I~~~l~k 213 (217)
T 3umf_A 157 ---------SNRVDDNEETIVKRFRTFNELTKPVIEHYKQQNKVITIDASGTVDAIFDKVNHELQK 213 (217)
T ss_dssp ------------CHHHHHHHHHHHHHHHHHTHHHHHHHHTTTCEEEEETTSCHHHHHHHHHHHHHT
T ss_pred ---------CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEECCCCHHHHHHHHHHHHHH
Confidence 368899999999999999999999999999999999999999999999999999975
No 4
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=100.00 E-value=5.7e-32 Score=239.33 Aligned_cols=190 Identities=32% Similarity=0.617 Sum_probs=165.1
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhCCCeeehHHHHH--------------HHHHcCCccCHHHHHHHHHHHHHccccc
Q 022951 73 KHVQWVFLGCPGVGKGTYASRLSNLLGVPHIATGDLLD--------------EIVSQGKLVSDEIIINLLSKRLEAGEAK 138 (289)
Q Consensus 73 ~~~~Ivl~GppGsGKSTlak~La~~lg~~~i~~d~l~~--------------~~l~~g~~v~~~~~~~ll~~~l~~~~~~ 138 (289)
++++|+|+|||||||||+|+.|++++|++|++++++++ +++..|..++++.+..++...+.....
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~~~g~~~is~~~~~r~~~~~~~~~g~~i~~~~~~g~~~~~~~~~~~~~~~l~~~~~- 106 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKKSHCYCHLSTGDLLREAAEKKTELGLKIKNIINEGKLVDDQMVLSLVDEKLKTPQC- 106 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHTTSSSHHHHHHHHHHHTTCCCCHHHHHHHHHHHTTSGGG-
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCeEEecHHHHHHHHhccchHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcccc-
Confidence 57899999999999999999999999999999999884 356788899999999988888876543
Q ss_pred CCceEEEcCcccH----HHHhhc-----CCCcEEEEEecCHHHHHHHHhcccccccCCCccccccccccCCCCCCCCCCC
Q 022951 139 GEAGFILDGFPRT----EILEGV-----TDIDLVINLKLREEALLAKCLGRRICSECGGNYNVACIDIKGENGNPGMYMG 209 (289)
Q Consensus 139 ~~~g~Ildg~p~~----~~l~~~-----~~~d~vI~Ld~~~e~l~~Rl~~R~~~~~~g~~y~~~~~~~~~~~~~~~~~~~ 209 (289)
+.+||+||||++ +.++.+ ..+|.+|+|++|++++++|+.+|+.|+.||..||.. |+|
T Consensus 107 -~~~~ildg~p~~~~q~~~l~~~l~~~~~~~d~vi~l~~p~e~~~~Rl~~R~~~~~~g~~y~~~-------------~~p 172 (243)
T 3tlx_A 107 -KKGFILDGYPRNVKQAEDLNKLLQKNQTKLDGVFYFNVPDEVLVNRISGRLIHKPSGRIYHKI-------------FNP 172 (243)
T ss_dssp -SSEEEEESCCCSHHHHHHHHHHHHHTTCCCCEEEEEECCHHHHHHHHHTEEEETTTTEEEETT-------------TBC
T ss_pred -cCCEEecCCCCcHHHHHHHHHHHHHcCCCCceEEEEeCCHHHHHHHHHcCCCCcccCcccccc-------------cCC
Confidence 469999999998 223221 358999999999999999999999999999999986 344
Q ss_pred CCCC--CCccccCccccCCCcHHHHHHHHHHHHHhchHHHHHHHHcCcEEEEeCCCCcccHHHHHHHHhc
Q 022951 210 PLLP--PPHCASKLITRSDDKEEVVRERLRIYNEKSRPVEEFYRRRGKLLEFDLPGGIPESWPKLLQALN 277 (289)
Q Consensus 210 ~~~~--~~~~~~~L~~r~~d~~~~~~~rl~~y~~~~~~l~~~y~~~~~l~~id~~~~~~ev~~~i~~~l~ 277 (289)
|..+ +..|+++|++|.+|+++.+++|++.|++...++.+||.+.+.++.||+++++++++.+|.++|.
T Consensus 173 p~~~~~~~~~~~~l~~r~dd~~e~i~~Rl~~~~~~~~~l~~~y~~~~~~~~id~~~~~~~v~~~i~~~l~ 242 (243)
T 3tlx_A 173 PKVPFRDDVTNEPLIQREDDNEDVLKKRLTVFKSETSPLISYYKNKNLLINLDATQPANDLEKKISQHID 242 (243)
T ss_dssp CSSTTBCTTTCCBCBCCGGGSHHHHHHHHHHHHHHTTHHHHHHHHTTCEEEEETTSCHHHHHHHHHHHHH
T ss_pred CcccCccccccccccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcEEEEECCCCHHHHHHHHHHHHc
Confidence 3222 2367899999999999999999999999999999999999999999999999999999999875
No 5
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=99.97 E-value=6.2e-31 Score=227.38 Aligned_cols=189 Identities=38% Similarity=0.728 Sum_probs=161.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhCCCeeehHHHHHH--------------HHHcCCccCHHHHHHHHHHHHHcccccCC
Q 022951 75 VQWVFLGCPGVGKGTYASRLSNLLGVPHIATGDLLDE--------------IVSQGKLVSDEIIINLLSKRLEAGEAKGE 140 (289)
Q Consensus 75 ~~Ivl~GppGsGKSTlak~La~~lg~~~i~~d~l~~~--------------~l~~g~~v~~~~~~~ll~~~l~~~~~~~~ 140 (289)
|+|+|+|+|||||||+|+.|++++|++++++|+++++ ++..|..++++.+..++...+..... +
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~d~~~r~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~--~ 78 (216)
T 3dl0_A 1 MNLVLMGLPGAGKGTQGERIVEKYGIPHISTGDMFRAAMKEETPLGLEAKSYIDKGELVPDEVTIGIVKERLGKDDC--E 78 (216)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHSSCCEEEHHHHHHHHHHTTCHHHHHHHHHHTTTCCCCHHHHHHHHHHHHTSGGG--T
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCcEEeHHHHHHHHHhcCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcccc--c
Confidence 5799999999999999999999999999999998844 34567788998888888888876443 4
Q ss_pred ceEEEcCcccH----HHHhhc-----CCCcEEEEEecCHHHHHHHHhcccccccCCCccccccccccCCCCCCCCCCCCC
Q 022951 141 AGFILDGFPRT----EILEGV-----TDIDLVINLKLREEALLAKCLGRRICSECGGNYNVACIDIKGENGNPGMYMGPL 211 (289)
Q Consensus 141 ~g~Ildg~p~~----~~l~~~-----~~~d~vI~Ld~~~e~l~~Rl~~R~~~~~~g~~y~~~~~~~~~~~~~~~~~~~~~ 211 (289)
.+||+||||.+ +.+... ..+|.+|+|++|++++.+|+.+|+.|+.||..||.. ++||.
T Consensus 79 ~~~ildg~p~~~~~~~~~~~~~~~~~~~~d~vi~l~~~~e~~~~Rl~~R~~~~~~g~~y~~~-------------~~pp~ 145 (216)
T 3dl0_A 79 RGFLLDGFPRTVAQAEALEEILEEMGKPIDYVINIQVDKDVLMERLTGRRICSVCGTTYHLV-------------FNPPK 145 (216)
T ss_dssp TCEEEESCCCSHHHHHHHHHHHHHTTCCCSEEEEEECCGGGHHHHHHTEEEETTTCCEEETT-------------TBCCS
T ss_pred CCEEEeCCCCCHHHHHHHHHHHHHcCCCCCEEEEEECCHHHHHHHHHCCCcCCccCCccccc-------------cCCCc
Confidence 68999999987 223222 248999999999999999999999999999999996 22221
Q ss_pred CC--CCccccCccccCCCcHHHHHHHHHHHHHhchHHHHHHHHcCcEEEEeCCCCcccHHHHHHHHhcc
Q 022951 212 LP--PPHCASKLITRSDDKEEVVRERLRIYNEKSRPVEEFYRRRGKLLEFDLPGGIPESWPKLLQALNL 278 (289)
Q Consensus 212 ~~--~~~~~~~L~~r~~d~~~~~~~rl~~y~~~~~~l~~~y~~~~~l~~id~~~~~~ev~~~i~~~l~~ 278 (289)
.+ +..|+.+|.+|.+|+++.+++|++.|++...++.+||.+.+.++.||+++++++++++|.++|+.
T Consensus 146 ~~~~~~~~~~~l~~r~~d~~e~i~~rl~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~v~~~i~~~l~~ 214 (216)
T 3dl0_A 146 TPGICDKDGGELYQRADDNEETVTKRLEVNMKQTAPLLDFYDEKGYLVNVNGQQDIQDVYADLKVLLGG 214 (216)
T ss_dssp STTBCTTTCCBEECCTTCSHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEECSSCHHHHHHHHHHHHGG
T ss_pred ccCccccccccccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEECCCCHHHHHHHHHHHHHh
Confidence 11 13577899999999999999999999999999999999989999999999999999999999874
No 6
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=99.97 E-value=1.8e-30 Score=224.32 Aligned_cols=189 Identities=34% Similarity=0.685 Sum_probs=160.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhCCCeeehHHHHHH--------------HHHcCCccCHHHHHHHHHHHHHcccccCC
Q 022951 75 VQWVFLGCPGVGKGTYASRLSNLLGVPHIATGDLLDE--------------IVSQGKLVSDEIIINLLSKRLEAGEAKGE 140 (289)
Q Consensus 75 ~~Ivl~GppGsGKSTlak~La~~lg~~~i~~d~l~~~--------------~l~~g~~v~~~~~~~ll~~~l~~~~~~~~ 140 (289)
|+|+|+|+|||||||+|+.|++++|++++++|+++++ ++..|..++++.+..++...+..... +
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~d~~~r~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~--~ 78 (216)
T 3fb4_A 1 MNIVLMGLPGAGKGTQAEQIIEKYEIPHISTGDMFRAAIKNGTELGLKAKSFMDQGNLVPDEVTIGIVHERLSKDDC--Q 78 (216)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHCCCEEEHHHHHHHHHHTTCHHHHHHHHHHHHTCCCCHHHHHHHHHHHHTSGGG--T
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCcEeeHHHHHHHHHhcCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcccC--C
Confidence 5799999999999999999999999999999998844 34567788888888888888876443 4
Q ss_pred ceEEEcCcccH----HHHhhc-----CCCcEEEEEecCHHHHHHHHhcccccccCCCccccccccccCCCCCCCCCCCCC
Q 022951 141 AGFILDGFPRT----EILEGV-----TDIDLVINLKLREEALLAKCLGRRICSECGGNYNVACIDIKGENGNPGMYMGPL 211 (289)
Q Consensus 141 ~g~Ildg~p~~----~~l~~~-----~~~d~vI~Ld~~~e~l~~Rl~~R~~~~~~g~~y~~~~~~~~~~~~~~~~~~~~~ 211 (289)
.+||+||||.. +.+... ..+|.+|||++|.+++.+|+.+|+.|+.||..||+. ++||.
T Consensus 79 ~~~ildg~p~~~~~~~~l~~~~~~~~~~~d~vi~l~~~~e~~~~Rl~~R~~~~~~g~~y~~~-------------~~pp~ 145 (216)
T 3fb4_A 79 KGFLLDGFPRTVAQADALDSLLTDLGKKLDYVLNIKVEQEELMKRLTGRWICKTCGATYHTI-------------FNPPA 145 (216)
T ss_dssp TCEEEESCCCSHHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHHHHSEEEETTTCCEEETT-------------TBCCS
T ss_pred CcEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHcCCCCCccCCccccc-------------cCCCC
Confidence 68999999887 223322 238999999999999999999999999999999996 22221
Q ss_pred CC--CCccccCccccCCCcHHHHHHHHHHHHHhchHHHHHHHHcCcEEEEeCCCCcccHHHHHHHHhcc
Q 022951 212 LP--PPHCASKLITRSDDKEEVVRERLRIYNEKSRPVEEFYRRRGKLLEFDLPGGIPESWPKLLQALNL 278 (289)
Q Consensus 212 ~~--~~~~~~~L~~r~~d~~~~~~~rl~~y~~~~~~l~~~y~~~~~l~~id~~~~~~ev~~~i~~~l~~ 278 (289)
.+ +..|+.+|.+|.+|+++.+++|++.|++...++.+||.+.+.++.||+++++++++++|.++|..
T Consensus 146 ~~~~~~~~~~~l~~r~~d~~e~i~~rl~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~v~~~i~~~l~~ 214 (216)
T 3fb4_A 146 VEGICDKDGGELYQRIDDKPETVKNRLDVNMKQTQPLLDFYSQKGVLKDIDGQQDIKKVFVDINDLLGG 214 (216)
T ss_dssp STTBCTTTCCBEECCGGGSHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEECSSCHHHHHHHHHHHHHT
T ss_pred cccccccccCccccCCCCCHHHHHHHHHHHHHhHHHHHHHHHcCCcEEEEECCCCHHHHHHHHHHHHHh
Confidence 11 12577899999999999999999999999999999999989999999999999999999999863
No 7
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=99.97 E-value=2e-29 Score=218.84 Aligned_cols=189 Identities=31% Similarity=0.585 Sum_probs=156.9
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhCCCeeehHHHHHH--------------HHHcCCccCHHHHHHHHHHHHHccccc
Q 022951 73 KHVQWVFLGCPGVGKGTYASRLSNLLGVPHIATGDLLDE--------------IVSQGKLVSDEIIINLLSKRLEAGEAK 138 (289)
Q Consensus 73 ~~~~Ivl~GppGsGKSTlak~La~~lg~~~i~~d~l~~~--------------~l~~g~~v~~~~~~~ll~~~l~~~~~~ 138 (289)
++++|+|+|+|||||||+|+.|++.+|++++++|+++++ ++..|+.++++....++...+.....
T Consensus 4 ~~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~d~li~~~~~~~t~~g~~i~~~~~~g~~~~~~~~~~~i~~~l~~~~~- 82 (217)
T 3be4_A 4 KKHNLILIGAPGSGKGTQCEFIKKEYGLAHLSTGDMLREAIKNGTKIGLEAKSIIESGNFVGDEIVLGLVKEKFDLGVC- 82 (217)
T ss_dssp GCCEEEEEECTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHTC--CCHHHHHHHHHTCCCCHHHHHHHHHHHHHTTTT-
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHhCceEEehhHHHHHHHHcCCHHHHHHHHHHHCCCcCCHHHHHHHHHHHHhcccc-
Confidence 457899999999999999999999999999999998843 34457778888888888877765332
Q ss_pred CCceEEEcCcccH----HHHh----hc-CCCcEEEEEecCHHHHHHHHhcccccccCCCccccccccccCCCCCCCCCCC
Q 022951 139 GEAGFILDGFPRT----EILE----GV-TDIDLVINLKLREEALLAKCLGRRICSECGGNYNVACIDIKGENGNPGMYMG 209 (289)
Q Consensus 139 ~~~g~Ildg~p~~----~~l~----~~-~~~d~vI~Ld~~~e~l~~Rl~~R~~~~~~g~~y~~~~~~~~~~~~~~~~~~~ 209 (289)
+.+||+||||++ +.+. .. ..+|++|||++|++++++|+.+|+.++.||..||+. |+|
T Consensus 83 -~~~~i~dg~~~~~~~~~~l~~~l~~~~~~~d~vi~L~~~~e~~~~Rl~~R~~~~~~g~~y~~~-------------~~p 148 (217)
T 3be4_A 83 -VNGFVLDGFPRTIPQAEGLAKILSEIGDSLTSVIYFEIDDSEIIERISGRCTHPASGRIYHVK-------------YNP 148 (217)
T ss_dssp -TTCEEEESCCCSHHHHHHHHHHHHHHTCCCCEEEEEECCHHHHHHHHHTEEECTTTCCEEETT-------------TBC
T ss_pred -CCCEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHcCCCCccccCccccc-------------cCC
Confidence 468999999986 2232 11 358999999999999999999999999999999996 333
Q ss_pred CCCC--CCccccCccccCCCcHHHHHHHHHHHHHhchHHHHHHHHcCcEEEEeCCCCcccHHHHHHHHh
Q 022951 210 PLLP--PPHCASKLITRSDDKEEVVRERLRIYNEKSRPVEEFYRRRGKLLEFDLPGGIPESWPKLLQAL 276 (289)
Q Consensus 210 ~~~~--~~~~~~~L~~r~~d~~~~~~~rl~~y~~~~~~l~~~y~~~~~l~~id~~~~~~ev~~~i~~~l 276 (289)
|..+ +..|..+|.+|.+|..+.+++|+..|++...++.+||.+.+.++.||+++++++++++|.+.|
T Consensus 149 p~~~~~~~~~~~~l~~~~dd~~e~v~~r~~~~~~~~~~l~~~y~~~~~~~~id~~~~~~~v~~~i~~~l 217 (217)
T 3be4_A 149 PKQPGIDDVTGEPLVWRDDDNAEAVKVRLDVFHKQTAPLVKFYEDLGILKRVNAKLPPKEVTEQIKKIL 217 (217)
T ss_dssp CSSTTBCTTTCCBCBCCGGGSHHHHHHHHHHHHHHTTHHHHHHHTTTCEEEEETTSCHHHHHHHHHHHC
T ss_pred CCccccccccccccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEECCCCHHHHHHHHHhhC
Confidence 2111 113567999999999999999999999999999999988788999999999999999998764
No 8
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=99.96 E-value=2e-28 Score=212.45 Aligned_cols=190 Identities=35% Similarity=0.647 Sum_probs=156.2
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhCCCeeehHHHHHH--------------HHHcCCccCHHHHHHHHHHHHH-cccc
Q 022951 73 KHVQWVFLGCPGVGKGTYASRLSNLLGVPHIATGDLLDE--------------IVSQGKLVSDEIIINLLSKRLE-AGEA 137 (289)
Q Consensus 73 ~~~~Ivl~GppGsGKSTlak~La~~lg~~~i~~d~l~~~--------------~l~~g~~v~~~~~~~ll~~~l~-~~~~ 137 (289)
++++|+|+|+|||||||+|+.|++.+++.++++|+++++ ++..|..++++.+..++...+. ....
T Consensus 3 ~~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~d~~~~~~~~~~~~~g~~i~~~~~~g~~~~~~~~~~~l~~~l~~~~~~ 82 (220)
T 1aky_A 3 ESIRMVLIGPPGAGKGTQAPNLQERFHAAHLATGDMLRSQIAKGTQLGLEAKKIMDQGGLVSDDIMVNMIKDELTNNPAC 82 (220)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHTTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHCGGG
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHcCceEEehhHHHHHHHHcCChHHHHHHHHHHCCCcCCHHHHHHHHHHHHHhcccc
Confidence 468899999999999999999999999999999988843 4566788889888888887776 3222
Q ss_pred cCCceEEEcCcccH----HHHhh-----cCCCcEEEEEecCHHHHHHHHhcccccccCCCccccccccccCCCCCCCCCC
Q 022951 138 KGEAGFILDGFPRT----EILEG-----VTDIDLVINLKLREEALLAKCLGRRICSECGGNYNVACIDIKGENGNPGMYM 208 (289)
Q Consensus 138 ~~~~g~Ildg~p~~----~~l~~-----~~~~d~vI~Ld~~~e~l~~Rl~~R~~~~~~g~~y~~~~~~~~~~~~~~~~~~ 208 (289)
+.+||+||||++ +.+.. ...+|++|||++|++++++|+.+|..++.||..||+. ++
T Consensus 83 --~~~~i~dg~~~~~~~~~~l~~~l~~~~~~~d~vi~L~~~~e~~~~R~~~r~~~~~~g~~y~~~-------------~~ 147 (220)
T 1aky_A 83 --KNGFILDGFPRTIPQAEKLDQMLKEQGTPLEKAIELKVDDELLVARITGRLIHPASGRSYHKI-------------FN 147 (220)
T ss_dssp --GSCEEEESCCCSHHHHHHHHHHHHHHTCCCCEEEEEECCHHHHHHHHHTEEECTTTCCEEETT-------------TB
T ss_pred --CCCeEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHhCCCccCccCCccccc-------------cC
Confidence 458999999876 22222 1358899999999999999999999999999999985 23
Q ss_pred CCCCCC-Ccc-ccCccccCCCcHHHHHHHHHHHHHhchHHHHHHHHcCcEEEEeCCCCcccHHHHHHHHhc
Q 022951 209 GPLLPP-PHC-ASKLITRSDDKEEVVRERLRIYNEKSRPVEEFYRRRGKLLEFDLPGGIPESWPKLLQALN 277 (289)
Q Consensus 209 ~~~~~~-~~~-~~~L~~r~~d~~~~~~~rl~~y~~~~~~l~~~y~~~~~l~~id~~~~~~ev~~~i~~~l~ 277 (289)
||..+- ..| ..+|.+|.+++.+.+++|++.|.+...++.++|.+.+.++.||+++++++++.+|.+.|.
T Consensus 148 pp~~~~~d~~~~~~l~~r~dd~~~~~~~rl~~~~~~~~~l~~~y~~~~~~~~id~~~~~~~v~~~i~~~l~ 218 (220)
T 1aky_A 148 PPKEDMKDDVTGEALVQRSDDNADALKKRLAAYHAQTEPIVDFYKKTGIWAGVDASQPPATVWADILNKLG 218 (220)
T ss_dssp CCSSTTBCTTTCCBCBCCTTCSHHHHHHHHHHHHHHTTHHHHHHHHHTCEEEEETTSCHHHHHHHHHHHHT
T ss_pred CCcccccccccccccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEECCCCHHHHHHHHHHHHh
Confidence 321110 012 358889999999999999999999999999999887889999999999999999999885
No 9
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=99.96 E-value=2.1e-28 Score=211.58 Aligned_cols=188 Identities=33% Similarity=0.628 Sum_probs=155.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhCCCeeehHHHHHHH--------------HHcCCccCHHHHHHHHHHHHHcccccCC
Q 022951 75 VQWVFLGCPGVGKGTYASRLSNLLGVPHIATGDLLDEI--------------VSQGKLVSDEIIINLLSKRLEAGEAKGE 140 (289)
Q Consensus 75 ~~Ivl~GppGsGKSTlak~La~~lg~~~i~~d~l~~~~--------------l~~g~~v~~~~~~~ll~~~l~~~~~~~~ 140 (289)
|+|+|+|+|||||||+|+.|++.+|+.++++|+++++. +..|..++++.+..++...+..... +
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~~~g~~~i~~d~~~r~~~~~~~~~g~~i~~~~~~g~~~~~~~~~~~i~~~l~~~~~--~ 78 (214)
T 1e4v_A 1 MRIILLGAPVAGKGTQAQFIMEKYGIPQISTGDMLRAAVKSGSELGKQAKDIMDAGKLVTDELVIALVKERIAQEDC--R 78 (214)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHCCCEEEHHHHHHHHHHHTCTTTGGGHHHHHHTCCCCHHHHHHHHHHHHTSGGG--G
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCeEEeHHHHHHHHHHcCChHHHHHHHHHHCCCcCCHHHHHHHHHHHHhcccc--C
Confidence 57999999999999999999999999999999988553 3456678888888888887765432 3
Q ss_pred ceEEEcCcccH----HHHhhc-CCCcEEEEEecCHHHHHHHHhcccccccCCCccccccccccCCCCCCCCCCCCCCC--
Q 022951 141 AGFILDGFPRT----EILEGV-TDIDLVINLKLREEALLAKCLGRRICSECGGNYNVACIDIKGENGNPGMYMGPLLP-- 213 (289)
Q Consensus 141 ~g~Ildg~p~~----~~l~~~-~~~d~vI~Ld~~~e~l~~Rl~~R~~~~~~g~~y~~~~~~~~~~~~~~~~~~~~~~~-- 213 (289)
.+||+||||++ +.|... ..+|++|||++|++.+++|+.+|..++.||..||+. ++||-.+
T Consensus 79 ~~~i~dg~~~~~~~~~~l~~~~~~~d~vi~l~~~~e~~~~R~~~R~~~~~~g~~~~~~-------------~~pp~~~~~ 145 (214)
T 1e4v_A 79 NGFLLDGFPRTIPQADAMKEAGINVDYVLEFDVPDELIVDRIVGRRVHAPSGRVYHVK-------------FNPPKVEGK 145 (214)
T ss_dssp GCEEEESCCCSHHHHHHHHHTTCCCSEEEEEECCHHHHHHHHHTEEEETTTTEEEETT-------------TBCCSSTTB
T ss_pred CCEEEeCCCCCHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHCCcccCCcCCccccc-------------CCCCCcccc
Confidence 58999999887 223322 358999999999999999999999999999999985 2222111
Q ss_pred CCccccCccccCCCcHHHHHHHHHHHHHhchHHHHHHHHc-----CcEEEEeCCCCcccHHHHHHHHhc
Q 022951 214 PPHCASKLITRSDDKEEVVRERLRIYNEKSRPVEEFYRRR-----GKLLEFDLPGGIPESWPKLLQALN 277 (289)
Q Consensus 214 ~~~~~~~L~~r~~d~~~~~~~rl~~y~~~~~~l~~~y~~~-----~~l~~id~~~~~~ev~~~i~~~l~ 277 (289)
+..|..+|.+|.+|+.+.+++|++.|++...++.++|.+. +.++.||+++++++++++|.+.|+
T Consensus 146 ~~~~~~~l~~r~dd~~~~~~~rl~~y~~~~~~l~~~~~~~~~~~~~~~~~ida~~~~~~v~~~i~~~l~ 214 (214)
T 1e4v_A 146 DDVTGEELTTRKDDQEETVRKRLVEYHQMTAPLIGYYSKEAEAGNTKYAKVDGTKPVAEVRADLEKILG 214 (214)
T ss_dssp CTTTCCBCBCCTTCSHHHHHHHHHHHHHHTTHHHHHHHHHHHHTSCEEEEEETTSCHHHHHHHHHHHHC
T ss_pred ccccccccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHhcccccCCeEEEEECCCCHHHHHHHHHHHhC
Confidence 1246789999999999999999999999999999999865 689999999999999999998873
No 10
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=99.96 E-value=4.4e-28 Score=212.49 Aligned_cols=191 Identities=37% Similarity=0.637 Sum_probs=158.5
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhCCCeeehHHHHHH--------------HHHcCCccCHHHHHHHHHHHHHccccc
Q 022951 73 KHVQWVFLGCPGVGKGTYASRLSNLLGVPHIATGDLLDE--------------IVSQGKLVSDEIIINLLSKRLEAGEAK 138 (289)
Q Consensus 73 ~~~~Ivl~GppGsGKSTlak~La~~lg~~~i~~d~l~~~--------------~l~~g~~v~~~~~~~ll~~~l~~~~~~ 138 (289)
.+++|+|+|+|||||||+|+.|+++|++.++++|+++++ ++..|..++++....++...+.....
T Consensus 15 ~~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~d~li~~~~~~~~~~g~~i~~~~~~g~~~~~~~~~~~i~~~l~~~~~- 93 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQAPKLAKNFCVCHLATGDMLRAMVASGSELGKKLKATMDAGKLVSDEMVLELIEKNLETPPC- 93 (233)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHHTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHHTSGGG-
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCceecHHHHHHHHHHcCChhHHHHHHHHHCCCcCCHHHHHHHHHHHHhcccc-
Confidence 567899999999999999999999999999999988743 45677888999988888887765433
Q ss_pred CCceEEEcCcccH----HHHhhc-----CCCcEEEEEecCHHHHHHHHhcccccccCCCccccccccccCCCCCCCCCCC
Q 022951 139 GEAGFILDGFPRT----EILEGV-----TDIDLVINLKLREEALLAKCLGRRICSECGGNYNVACIDIKGENGNPGMYMG 209 (289)
Q Consensus 139 ~~~g~Ildg~p~~----~~l~~~-----~~~d~vI~Ld~~~e~l~~Rl~~R~~~~~~g~~y~~~~~~~~~~~~~~~~~~~ 209 (289)
+.+||+||||++ +.+..+ ..++++|||+++++++++|+.+|..|+.||..||.. |+|
T Consensus 94 -~~g~ildg~~~~~~~~~~l~~~l~~~~~~~d~vi~L~~~~e~~~~Rl~~R~~~~~~g~~y~~~-------------~~p 159 (233)
T 1ak2_A 94 -KNGFLLDGFPRTVRQAEMLDDLMEKRKEKLDSVIEFSIPDSLLIRRITGRLIHPQSGRSYHEE-------------FNP 159 (233)
T ss_dssp -TTCEEEESCCCSHHHHHHHHHHHHHHTCCCCEEEEEECCHHHHHHHHHTCEECTTTCCEEBTT-------------TBC
T ss_pred -cCcEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHcCCcCCccCCccccc-------------cCC
Confidence 468999999986 222221 358999999999999999999999999999999985 333
Q ss_pred CCCC--CCccccCccccCCCcHHHHHHHHHHHHHhchHHHHHHHHcCcEEEEeCCCCcccHHHHHHHHhcc
Q 022951 210 PLLP--PPHCASKLITRSDDKEEVVRERLRIYNEKSRPVEEFYRRRGKLLEFDLPGGIPESWPKLLQALNL 278 (289)
Q Consensus 210 ~~~~--~~~~~~~L~~r~~d~~~~~~~rl~~y~~~~~~l~~~y~~~~~l~~id~~~~~~ev~~~i~~~l~~ 278 (289)
+..+ +..|+.+|++|.+++.+.+++|+..|++...++.++|.+.+.++.||+++++++++++|.+.|..
T Consensus 160 p~~~~~~~~~~~~l~~r~d~~~~~~~~r~~~y~~~~~~~~~~y~~~~~~~~id~~~~~~~v~~~I~~~l~~ 230 (233)
T 1ak2_A 160 PKEPMKDDITGEPLIRRSDDNKKALKIRLEAYHTQTTPLVEYYSKRGIHSAIDASQTPDVVFASILAAFSK 230 (233)
T ss_dssp CSSTTBCTTTCCBCEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEETTSCHHHHHHHHHHHHHH
T ss_pred CccccccccccccccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEECCCCHHHHHHHHHHHHHh
Confidence 2111 11235678899999999999999999999999999998878899999999999999999998853
No 11
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=99.96 E-value=1.1e-27 Score=209.02 Aligned_cols=194 Identities=34% Similarity=0.616 Sum_probs=158.1
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhCCCeeehHHHHHH--------------HHHcCCccCHHHHHHHHHHHHHccccc
Q 022951 73 KHVQWVFLGCPGVGKGTYASRLSNLLGVPHIATGDLLDE--------------IVSQGKLVSDEIIINLLSKRLEAGEAK 138 (289)
Q Consensus 73 ~~~~Ivl~GppGsGKSTlak~La~~lg~~~i~~d~l~~~--------------~l~~g~~v~~~~~~~ll~~~l~~~~~~ 138 (289)
++++|+|+|+|||||||+++.|++.+|+.++++|++++. ++..|..++++.+..++...+... .
T Consensus 6 ~~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~d~~~~~~~~~~~~~g~~i~~~~~~g~~~~~~~~~~~~~~~l~~~--~ 83 (227)
T 1zd8_A 6 RLLRAVIMGAPGSGKGTVSSRITTHFELKHLSSGDLLRDNMLRGTEIGVLAKAFIDQGKLIPDDVMTRLALHELKNL--T 83 (227)
T ss_dssp -CCEEEEEECTTSSHHHHHHHHHHHSSSEEEEHHHHHHHHHHHTCHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHTC--T
T ss_pred cCcEEEEECCCCCCHHHHHHHHHHHcCCeEEechHHHHHhhhcCChHHHHHHHHHHcCCcCCHHHHHHHHHHHHhcc--c
Confidence 468899999999999999999999999999999988743 344577788888777776666543 1
Q ss_pred CCceEEEcCcccH----HHHhhcCCCcEEEEEecCHHHHHHHHhcccccccCCCccccccccccCCCCCCCCCCCCCCC-
Q 022951 139 GEAGFILDGFPRT----EILEGVTDIDLVINLKLREEALLAKCLGRRICSECGGNYNVACIDIKGENGNPGMYMGPLLP- 213 (289)
Q Consensus 139 ~~~g~Ildg~p~~----~~l~~~~~~d~vI~Ld~~~e~l~~Rl~~R~~~~~~g~~y~~~~~~~~~~~~~~~~~~~~~~~- 213 (289)
+.+||+|||+.+ +.+..+..++.+|||++|.+.+++|+.+|+.++.+|..||.. ++||..+
T Consensus 84 -~~~~vid~~~~~~~~~~~l~~~~~~~~vi~L~~~~~~~~~R~~~R~~~~~~~~~y~~~-------------~~pp~~~~ 149 (227)
T 1zd8_A 84 -QYSWLLDGFPRTLPQAEALDRAYQIDTVINLNVPFEVIKQRLTARWIHPASGRVYNIE-------------FNPPKTVG 149 (227)
T ss_dssp -TSCEEEESCCCSHHHHHHHHTTSCCCEEEEEECCHHHHHHHHTCEEEETTTTEEEETT-------------TBCCSSTT
T ss_pred -CCCEEEeCCCCCHHHHHHHHHhcCCCEEEEEECCHHHHHHHHHcCcCCCccCCccccc-------------cCCCCccc
Confidence 458999999877 335555678999999999999999999998888889889875 2221111
Q ss_pred -CCccccCccccCCCcHHHHHHHHHHHHHhchHHHHHHHHcCcEEEEeCCCCcccHHHHHHHHhccCCcch
Q 022951 214 -PPHCASKLITRSDDKEEVVRERLRIYNEKSRPVEEFYRRRGKLLEFDLPGGIPESWPKLLQALNLEDPED 283 (289)
Q Consensus 214 -~~~~~~~L~~r~~d~~~~~~~rl~~y~~~~~~l~~~y~~~~~l~~id~~~~~~ev~~~i~~~l~~~~~~~ 283 (289)
+..|..+|.+|.++..+.+++|+..|++...++.+||++.+.++.||++ ++++++++|.++|.......
T Consensus 150 ~~~~~~~~l~~r~~~~~e~~~~r~~~y~~~~~~l~~~y~~~~~~~~id~~-~~~~v~~~i~~~l~~~~~~~ 219 (227)
T 1zd8_A 150 IDDLTGEPLIQREDDKPETVIKRLKAYEDQTKPVLEYYQKKGVLETFSGT-ETNKIWPYVYAFLQTKVPQR 219 (227)
T ss_dssp BCTTTCCBCBCCGGGSHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEECS-SHHHHHHHHHHHHTTTSCC-
T ss_pred ccccccccccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHccCCEEEEeCC-CHHHHHHHHHHHHHhhcCCC
Confidence 1245678999988899999999999999999999999888889999999 99999999999998765433
No 12
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=99.96 E-value=6.5e-28 Score=210.31 Aligned_cols=186 Identities=29% Similarity=0.493 Sum_probs=153.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhCCCeeehHHHHHH--------------HHHcCCccCHHHHHHHHHHHHHcccccCC
Q 022951 75 VQWVFLGCPGVGKGTYASRLSNLLGVPHIATGDLLDE--------------IVSQGKLVSDEIIINLLSKRLEAGEAKGE 140 (289)
Q Consensus 75 ~~Ivl~GppGsGKSTlak~La~~lg~~~i~~d~l~~~--------------~l~~g~~v~~~~~~~ll~~~l~~~~~~~~ 140 (289)
|+|+|+|+|||||||+++.|++.+|+.++++|+++++ ++..|..++++.+..++...+.... +
T Consensus 1 m~I~l~G~~GsGKsT~a~~La~~lg~~~i~~dd~~r~~~~~~~~~g~~i~~~~~~g~~~~~~~~~~~i~~~l~~~~---g 77 (223)
T 2xb4_A 1 MNILIFGPNGSGKGTQGNLVKDKYSLAHIESGGIFREHIGGGTELGKKAKEFIDRGDLVPDDITIPMVLETLESKG---K 77 (223)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHTCEEEEHHHHHHHHTTTTCHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHHHC---T
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCeEEchHHHHHHHHHcCCHHHHHHHHHHHcCCcCcHHHHHHHHHHHHhccc---C
Confidence 5799999999999999999999999999999888743 3456777888888888887776532 3
Q ss_pred ceEEEcCcccH----HHHhhc-----CCCcEEEEEecCHHHHHHHHhccccccc-CCCccccccccccCCCCCCCCCCCC
Q 022951 141 AGFILDGFPRT----EILEGV-----TDIDLVINLKLREEALLAKCLGRRICSE-CGGNYNVACIDIKGENGNPGMYMGP 210 (289)
Q Consensus 141 ~g~Ildg~p~~----~~l~~~-----~~~d~vI~Ld~~~e~l~~Rl~~R~~~~~-~g~~y~~~~~~~~~~~~~~~~~~~~ 210 (289)
.+||+||||++ +.+..+ ..+|++|||++|++++++|+.+|..++. ||..||... +||
T Consensus 78 ~~vIlDg~~~~~~~~~~l~~~~~~~~~~~d~vi~l~~~~e~~~~Rl~~R~~~~~~~g~~y~~~~-------------~~p 144 (223)
T 2xb4_A 78 DGWLLDGFPRNTVQAQKLFEALQEKGMKINFVIEILLPREVAKNRIMGRRICKNNPNHPNNIFI-------------DAI 144 (223)
T ss_dssp TCEEEESCCCSHHHHHHHHHHHHHTTCCCCEEEEEECCHHHHHHHHHTBCEESSCTTSCCBTTC-------------GGG
T ss_pred CeEEEeCCcCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHcccCCccccCCcccccc-------------CCC
Confidence 58999999986 233221 3589999999999999999999988777 999999862 222
Q ss_pred CC---CCCccccCccccCCCcHH-HHHHHHHHHHHhchHHHH---HHHH-----cCcEEEEeCCCCcccHHHHHHHHh
Q 022951 211 LL---PPPHCASKLITRSDDKEE-VVRERLRIYNEKSRPVEE---FYRR-----RGKLLEFDLPGGIPESWPKLLQAL 276 (289)
Q Consensus 211 ~~---~~~~~~~~L~~r~~d~~~-~~~~rl~~y~~~~~~l~~---~y~~-----~~~l~~id~~~~~~ev~~~i~~~l 276 (289)
.. -+..|+.+|.+|.+|+.+ .+++|+..|++...++.+ +|.+ .+.++.||+++++++++++|.+.|
T Consensus 145 ~~~~~~~~~~~~~l~~r~dd~~e~~i~~rl~~~~~~~~p~~~~~~~y~~~a~~~~~~~~~ida~~~~~~v~~~i~~~l 222 (223)
T 2xb4_A 145 KPNGDVCRVCGGALSARADDQDEGAINKRHDIYYNTVDGTLAAAYYYKNMAAKEGFVYIELDGEGSIDSIKDTLLAQL 222 (223)
T ss_dssp CCBTTBCTTTCCBEECCGGGGCHHHHHHHHHHHTCTTTSHHHHHHHHHTTHHHHTCEEEEEETTSCHHHHHHHHHHHH
T ss_pred ccccccccccccccccCCCCCHHHHHHHHHHHHHHhHHHHHhhHHHHhhhhhccCCeEEEEECCCCHHHHHHHHHHHh
Confidence 11 123466899999998888 999999999999999999 9987 578999999999999999999887
No 13
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=99.94 E-value=1.8e-26 Score=200.33 Aligned_cols=187 Identities=31% Similarity=0.535 Sum_probs=153.0
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhCCCeeehHHHHHH--------------HHHcCCccCHHHHHHHHHHHHHccccc
Q 022951 73 KHVQWVFLGCPGVGKGTYASRLSNLLGVPHIATGDLLDE--------------IVSQGKLVSDEIIINLLSKRLEAGEAK 138 (289)
Q Consensus 73 ~~~~Ivl~GppGsGKSTlak~La~~lg~~~i~~d~l~~~--------------~l~~g~~v~~~~~~~ll~~~l~~~~~~ 138 (289)
++++|+|+|+|||||||+++.|++++++.++++|++++. ++..|+.++++.+..++...+......
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~~l~~~~i~~d~~~~~~~~~~~~~g~~i~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 83 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKTKYQLAHISAGDLLRAEIAAGSENGKRAKEFMEKGQLVPDEIVVNMVKERLRQPDAQ 83 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHHHHCCEECCHHHHHHHHHHHTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHSHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCceecHHHHHHHHHHcCCchhHHHHHHHHcCCcCCHHHHHHHHHHHHhhcccc
Confidence 467899999999999999999999999999999988743 456788888888888777766543222
Q ss_pred CCceEEEcCcccH-H---HHhh-cCCCcEEEEEecCHHHHHHHHhcccccccCCCccccccccccCCCCCCCCCCCCCCC
Q 022951 139 GEAGFILDGFPRT-E---ILEG-VTDIDLVINLKLREEALLAKCLGRRICSECGGNYNVACIDIKGENGNPGMYMGPLLP 213 (289)
Q Consensus 139 ~~~g~Ildg~p~~-~---~l~~-~~~~d~vI~Ld~~~e~l~~Rl~~R~~~~~~g~~y~~~~~~~~~~~~~~~~~~~~~~~ 213 (289)
..+||+|||+++ + .+.. ...++++|||+++++.+.+|+..|..++.||+.|+.. +.|
T Consensus 84 -~~~~vidg~~~~~~~~~~l~~~~~~~~~vi~L~~~~~~~~~R~~~r~~~~~~g~~~~~~-----------------~~p 145 (222)
T 1zak_A 84 -ENGWLLDGYPRSYSQAMALETLEIRPDTFILLDVPDELLVERVVGRRLDPVTGKIYHLK-----------------YSP 145 (222)
T ss_dssp -HTCEEEESCCCSHHHHHHHHTTTCCCSEEEEEECCHHHHHHHHTTEEECTTTCCEEESS-----------------SSC
T ss_pred -CCcEEEECCCCCHHHHHHHHHcCCCCCEEEEEECCHHHHHHHHHcCCcccccCCccccc-----------------cCC
Confidence 358999999987 2 2332 2247999999999999999999999899999999984 334
Q ss_pred CC--ccccCccccCCCcHHHHHHHHHHHHHhchHHHHHHHHcCcEEEEeCCCCcccHHHHHHHHhccC
Q 022951 214 PP--HCASKLITRSDDKEEVVRERLRIYNEKSRPVEEFYRRRGKLLEFDLPGGIPESWPKLLQALNLE 279 (289)
Q Consensus 214 ~~--~~~~~L~~r~~d~~~~~~~rl~~y~~~~~~l~~~y~~~~~l~~id~~~~~~ev~~~i~~~l~~~ 279 (289)
|+ ....+|..|.+|..+.+++|+..|+....++.++|.. .++.||+++++++++++|.+.|...
T Consensus 146 p~~~~~~~~l~~r~~d~~~~i~~Rl~~~~~~~~~l~~~y~~--~~~~Id~~~~~~ev~~~I~~~l~~~ 211 (222)
T 1zak_A 146 PENEEIASRLTQRFDDTEEKVKLRLETYYQNIESLLSTYEN--IIVKVQGDATVDAVFAKIDELLGSI 211 (222)
T ss_dssp CCSSGGGGGCBCCTTCCTTHHHHHHHHHHHHHHHHHHTTCC--CEEEEECSSCHHHHHHHHHHHHHHH
T ss_pred CcccccccccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHh--cEEEEECCCCHHHHHHHHHHHHHhh
Confidence 43 3346889998888999999999999998888888753 5889999999999999999998653
No 14
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=99.91 E-value=4.9e-23 Score=175.86 Aligned_cols=170 Identities=26% Similarity=0.503 Sum_probs=133.2
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHHHHhCCCeeehHHHHHH---------------HHHcCCccCHHHHHHHHHHHHHcc
Q 022951 71 EGKHVQWVFLGCPGVGKGTYASRLSNLLGVPHIATGDLLDE---------------IVSQGKLVSDEIIINLLSKRLEAG 135 (289)
Q Consensus 71 ~~~~~~Ivl~GppGsGKSTlak~La~~lg~~~i~~d~l~~~---------------~l~~g~~v~~~~~~~ll~~~l~~~ 135 (289)
..++++|+|+|+|||||||+++.|++.+|+.+++.|++++. ++..|...+++....++.+.+...
T Consensus 12 ~~~~~~I~l~G~~GsGKsT~~~~L~~~~g~~~i~~d~~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~l~~~i~~~ 91 (203)
T 1ukz_A 12 PDQVSVIFVLGGPGAGKGTQCEKLVKDYSFVHLSAGDLLRAEQGRAGSQYGELIKNCIKEGQIVPQEITLALLRNAISDN 91 (203)
T ss_dssp TTTCEEEEEECSTTSSHHHHHHHHHHHSSCEEEEHHHHHHHHHHSTTCSCHHHHHHHHHTTCCCCHHHHHHHHHHHHHHH
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHHHcCceEEeHHHHHHHHHhccCCHHHHHHHHHHHcCCcCCHHHHHHHHHHHHHhh
Confidence 34567899999999999999999999999999999988743 234566667776666666555432
Q ss_pred cccCCceEEEcCcccH----HHHhh-cCCCcEEEEEecCHHHHHHHHhcccccccCCCccccccccccCCCCCCCCCCCC
Q 022951 136 EAKGEAGFILDGFPRT----EILEG-VTDIDLVINLKLREEALLAKCLGRRICSECGGNYNVACIDIKGENGNPGMYMGP 210 (289)
Q Consensus 136 ~~~~~~g~Ildg~p~~----~~l~~-~~~~d~vI~Ld~~~e~l~~Rl~~R~~~~~~g~~y~~~~~~~~~~~~~~~~~~~~ 210 (289)
...+..+||+||++++ ..++. +..+|++|||++|.+++++|+.+|....
T Consensus 92 l~~g~~~~i~dg~~~~~~~~~~~~~~~~~~~~~i~l~~~~e~~~~Rl~~R~~~~-------------------------- 145 (203)
T 1ukz_A 92 VKANKHKFLIDGFPRKMDQAISFERDIVESKFILFFDCPEDIMLERLLERGKTS-------------------------- 145 (203)
T ss_dssp HHTTCCEEEEETCCCSHHHHHHHHHHTCCCSEEEEEECCHHHHHHHHHHHHHHH--------------------------
T ss_pred hccCCCeEEEeCCCCCHHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHhccccC--------------------------
Confidence 2222358999999876 23332 3358999999999999999999884210
Q ss_pred CCCCCccccCccccCCCcHHHHHHHHHHHHHhchHHHHHHHHcCcEEEEeCCCCcccHHHHHHHHhcc
Q 022951 211 LLPPPHCASKLITRSDDKEEVVRERLRIYNEKSRPVEEFYRRRGKLLEFDLPGGIPESWPKLLQALNL 278 (289)
Q Consensus 211 ~~~~~~~~~~L~~r~~d~~~~~~~rl~~y~~~~~~l~~~y~~~~~l~~id~~~~~~ev~~~i~~~l~~ 278 (289)
.+.+++.+.+++|+..|.+...++.++|...+.++.||+++++++++.+|.+.|..
T Consensus 146 ------------~~~~~~~e~~~~r~~~~~~~~~~~~~~~~~~~~vi~id~~~~~e~v~~~i~~~l~~ 201 (203)
T 1ukz_A 146 ------------GRSDDNIESIKKRFNTFKETSMPVIEYFETKSKVVRVRCDRSVEDVYKDVQDAIRD 201 (203)
T ss_dssp ------------CCTTCSHHHHHHHHHHHHHTTHHHHHHHHTTTCEEEEECSSCHHHHHHHHHHHHHH
T ss_pred ------------CCCCCCHHHHHHHHHHHHHhhHHHHHHHHhcCcEEEEECCCCHHHHHHHHHHHHhc
Confidence 13456788899999999999899989888778888999999999999999998853
No 15
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=99.91 E-value=8.6e-23 Score=172.70 Aligned_cols=167 Identities=30% Similarity=0.566 Sum_probs=133.4
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhCCCeeehHHHHHH--------------HHHcCCccCHHHHHHHHHHHHHccccc
Q 022951 73 KHVQWVFLGCPGVGKGTYASRLSNLLGVPHIATGDLLDE--------------IVSQGKLVSDEIIINLLSKRLEAGEAK 138 (289)
Q Consensus 73 ~~~~Ivl~GppGsGKSTlak~La~~lg~~~i~~d~l~~~--------------~l~~g~~v~~~~~~~ll~~~l~~~~~~ 138 (289)
++++|+|+|+|||||||+|+.|++.+|+++++.|++++. ++..|+.++.+....++...+......
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~La~~l~~~~i~~d~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~i~~~~~~ 87 (196)
T 2c95_A 8 KTNIIFVVGGPGSGKGTQCEKIVQKYGYTHLSTGDLLRSEVSSGSARGKKLSEIMEKGQLVPLETVLDMLRDAMVAKVNT 87 (196)
T ss_dssp TSCEEEEEECTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHTTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHTTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhCCeEEcHHHHHHHHHHcCChHHHHHHHHHHcCCcCCHHHHHHHHHHHHHhcccc
Confidence 457899999999999999999999999999999988743 345677778877777776666543322
Q ss_pred CCceEEEcCcccH-HH---Hhh-cCCCcEEEEEecCHHHHHHHHhcccccccCCCccccccccccCCCCCCCCCCCCCCC
Q 022951 139 GEAGFILDGFPRT-EI---LEG-VTDIDLVINLKLREEALLAKCLGRRICSECGGNYNVACIDIKGENGNPGMYMGPLLP 213 (289)
Q Consensus 139 ~~~g~Ildg~p~~-~~---l~~-~~~~d~vI~Ld~~~e~l~~Rl~~R~~~~~~g~~y~~~~~~~~~~~~~~~~~~~~~~~ 213 (289)
+.+||+||||+. +. +.. +..++++|||++|++++.+|+.+|....
T Consensus 88 -~~~vi~d~~~~~~~~~~~~~~~~~~~~~vi~l~~~~e~~~~R~~~R~~~~----------------------------- 137 (196)
T 2c95_A 88 -SKGFLIDGYPREVQQGEEFERRIGQPTLLLYVDAGPETMTQRLLKRGETS----------------------------- 137 (196)
T ss_dssp -CSCEEEESCCCSHHHHHHHHHHTCCCSEEEEEECCHHHHHHHHHHHHTSS-----------------------------
T ss_pred -CCcEEEeCCCCCHHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHccCCcC-----------------------------
Confidence 568999999876 22 222 3568999999999999999998874210
Q ss_pred CCccccCccccCCCcHHHHHHHHHHHHHhchHHHHHHHHcCcEEEEeCCCCcccHHHHHHHHhcc
Q 022951 214 PPHCASKLITRSDDKEEVVRERLRIYNEKSRPVEEFYRRRGKLLEFDLPGGIPESWPKLLQALNL 278 (289)
Q Consensus 214 ~~~~~~~L~~r~~d~~~~~~~rl~~y~~~~~~l~~~y~~~~~l~~id~~~~~~ev~~~i~~~l~~ 278 (289)
.|.++..+.+.+|+..|.....++.++|...+.++.||+++++++++++|.+.+..
T Consensus 138 ---------~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~Id~~~~~e~v~~~i~~~l~~ 193 (196)
T 2c95_A 138 ---------GRVDDNEETIKKRLETYYKATEPVIAFYEKRGIVRKVNAEGSVDSVFSQVCTHLDA 193 (196)
T ss_dssp ---------SCGGGSHHHHHHHHHHHHHHTHHHHHHHHHHTCEEEEECCSCHHHHHHHHHHHHHH
T ss_pred ---------CCCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcEEEEECCCCHHHHHHHHHHHHHH
Confidence 13345678889999999999999989998777788999999999999999998854
No 16
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=99.90 E-value=1e-22 Score=171.61 Aligned_cols=167 Identities=29% Similarity=0.587 Sum_probs=130.8
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHHHhCCCeeehHHHHHH---------------HHHcCCccCHHHHHHHHHHHHHccc--
Q 022951 74 HVQWVFLGCPGVGKGTYASRLSNLLGVPHIATGDLLDE---------------IVSQGKLVSDEIIINLLSKRLEAGE-- 136 (289)
Q Consensus 74 ~~~Ivl~GppGsGKSTlak~La~~lg~~~i~~d~l~~~---------------~l~~g~~v~~~~~~~ll~~~l~~~~-- 136 (289)
+++|+|+|+|||||||+|+.|++.+|+++++.|++++. ++..|...+++....++...+....
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~ 82 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEKYGYTHLSAGELLRDERKNPDSQYGELIEKYIKEGKIVPVEITISLLKREMDQTMAA 82 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHCTTSTTHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhCCeEEeHHHHHHHHHhccCChHHHHHHHHHHCCCcCCHHHHHHHHHHHHHhhhcc
Confidence 57899999999999999999999999999999988743 3445667777666555554443211
Q ss_pred ccCCceEEEcCcccH-H---HHhh-c---CCCcEEEEEecCHHHHHHHHhcccccccCCCccccccccccCCCCCCCCCC
Q 022951 137 AKGEAGFILDGFPRT-E---ILEG-V---TDIDLVINLKLREEALLAKCLGRRICSECGGNYNVACIDIKGENGNPGMYM 208 (289)
Q Consensus 137 ~~~~~g~Ildg~p~~-~---~l~~-~---~~~d~vI~Ld~~~e~l~~Rl~~R~~~~~~g~~y~~~~~~~~~~~~~~~~~~ 208 (289)
...+.+||+||++.+ + .|.. + ..++++|||++|++++++|+.+|...
T Consensus 83 ~~~~~~vi~dg~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~e~~~~R~~~R~~~------------------------- 137 (196)
T 1tev_A 83 NAQKNKFLIDGFPRNQDNLQGWNKTMDGKADVSFVLFFDCNNEICIERCLERGKS------------------------- 137 (196)
T ss_dssp CTTCCEEEEESCCCSHHHHHHHHHHHTTTCEEEEEEEEECCHHHHHHHHHHHHHT-------------------------
T ss_pred ccCCCeEEEeCCCCCHHHHHHHHHHhcccCCCCEEEEEECCHHHHHHHHHccccc-------------------------
Confidence 111468999999886 2 2222 1 24789999999999999999988421
Q ss_pred CCCCCCCccccCccccCCCcHHHHHHHHHHHHHhchHHHHHHHHcCcEEEEeCCCCcccHHHHHHHHhcc
Q 022951 209 GPLLPPPHCASKLITRSDDKEEVVRERLRIYNEKSRPVEEFYRRRGKLLEFDLPGGIPESWPKLLQALNL 278 (289)
Q Consensus 209 ~~~~~~~~~~~~L~~r~~d~~~~~~~rl~~y~~~~~~l~~~y~~~~~l~~id~~~~~~ev~~~i~~~l~~ 278 (289)
..|.+++.+.+++++..|.....++.++|.+.+.++.||+++++++++.+|.+.|..
T Consensus 138 -------------~~r~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~id~~~~~~~v~~~i~~~l~~ 194 (196)
T 1tev_A 138 -------------SGRSDDNRESLEKRIQTYLQSTKPIIDLYEEMGKVKKIDASKSVDEVFDEVVQIFDK 194 (196)
T ss_dssp -------------SSCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEETTSCHHHHHHHHHHHHHH
T ss_pred -------------CCCCCCCHHHHHHHHHHHHHhHHHHHHHHHhcCCEEEEECCCCHHHHHHHHHHHHHh
Confidence 134566788899999999999999999998878888999999999999999998854
No 17
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=99.90 E-value=8.5e-23 Score=174.38 Aligned_cols=164 Identities=38% Similarity=0.740 Sum_probs=128.7
Q ss_pred CCCCCCceEEEEEcCCCCCHHHHHHHHHHHhCCCeeehHHHHHH--------------HHHcCCccCHHHHHHHHHHHHH
Q 022951 68 GKGEGKHVQWVFLGCPGVGKGTYASRLSNLLGVPHIATGDLLDE--------------IVSQGKLVSDEIIINLLSKRLE 133 (289)
Q Consensus 68 ~~~~~~~~~Ivl~GppGsGKSTlak~La~~lg~~~i~~d~l~~~--------------~l~~g~~v~~~~~~~ll~~~l~ 133 (289)
......+++|+|+|+|||||||+|+.|++.+|++++++|+++++ ++..|+.++++.....+...+.
T Consensus 14 ~~~~~~~~~I~l~G~~GsGKST~a~~La~~l~~~~i~~d~~~r~~~~~~~~~g~~i~~~~~~g~~~~~~~~~~~~~~~~~ 93 (201)
T 2cdn_A 14 LVPRGSHMRVLLLGPPGAGKGTQAVKLAEKLGIPQISTGELFRRNIEEGTKLGVEAKRYLDAGDLVPSDLTNELVDDRLN 93 (201)
T ss_dssp --CCCSCCEEEEECCTTSSHHHHHHHHHHHHTCCEEEHHHHHHHHHHTTCHHHHHHHHHHHHTCCCCHHHHHHHHHHHTT
T ss_pred ccCCCCCeEEEEECCCCCCHHHHHHHHHHHhCCcEEehhHHHHHHHHcCChHHHHHHHHHHcCCcccHHHHHHHHHHHHh
Confidence 33455678999999999999999999999999999999988744 2345667777777777766654
Q ss_pred cccccCCceEEEcCcccH----HHHhhc-----CCCcEEEEEecCHHHHHHHHhcccccccCCCccccccccccCCCCCC
Q 022951 134 AGEAKGEAGFILDGFPRT----EILEGV-----TDIDLVINLKLREEALLAKCLGRRICSECGGNYNVACIDIKGENGNP 204 (289)
Q Consensus 134 ~~~~~~~~g~Ildg~p~~----~~l~~~-----~~~d~vI~Ld~~~e~l~~Rl~~R~~~~~~g~~y~~~~~~~~~~~~~~ 204 (289)
.... +.+||+||++.+ +.+..+ ..++.+|||++|++++.+|+.+|.
T Consensus 94 ~~~~--~~~vIldg~~~~~~~~~~l~~~l~~~~~~~~~vi~l~~~~e~~~~Rl~~R~----------------------- 148 (201)
T 2cdn_A 94 NPDA--ANGFILDGYPRSVEQAKALHEMLERRGTDIDAVLEFRVSEEVLLERLKGRG----------------------- 148 (201)
T ss_dssp SGGG--TTCEEEESCCCSHHHHHHHHHHHHHTTCCCCEEEEEECCHHHHHHHHHHHC-----------------------
T ss_pred cccC--CCeEEEECCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHcCC-----------------------
Confidence 4322 468999998876 222221 247899999999999999999873
Q ss_pred CCCCCCCCCCCccccCccccCCCcHHHHHHHHHHHHHhchHHHHHHHHcCcEEEEeCCCCcccHHHHHHHHhc
Q 022951 205 GMYMGPLLPPPHCASKLITRSDDKEEVVRERLRIYNEKSRPVEEFYRRRGKLLEFDLPGGIPESWPKLLQALN 277 (289)
Q Consensus 205 ~~~~~~~~~~~~~~~~L~~r~~d~~~~~~~rl~~y~~~~~~l~~~y~~~~~l~~id~~~~~~ev~~~i~~~l~ 277 (289)
|++++.+.+++|++.|.....++.++| ...++.||+++++++++.+|.+.|+
T Consensus 149 -------------------r~~~~~e~~~~r~~~~~~~~~~~~~~~--~~~~~~Id~~~~~eev~~~I~~~l~ 200 (201)
T 2cdn_A 149 -------------------RADDTDDVILNRMKVYRDETAPLLEYY--RDQLKTVDAVGTMDEVFARALRALG 200 (201)
T ss_dssp -------------------CTTCSHHHHHHHHHHHHHHTTTHHHHT--TTTEEEEECCSCHHHHHHHHHHHTT
T ss_pred -------------------CCCCCHHHHHHHHHHHHHhhHHHHHHh--cCcEEEEeCCCCHHHHHHHHHHHHc
Confidence 234567889999999999888888887 4568899999999999999998875
No 18
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=99.90 E-value=3.5e-22 Score=168.07 Aligned_cols=165 Identities=27% Similarity=0.462 Sum_probs=131.9
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhCCCeeehHHHHHHH--------------HHcCCccCHHHHHHHHHHHHHccccc
Q 022951 73 KHVQWVFLGCPGVGKGTYASRLSNLLGVPHIATGDLLDEI--------------VSQGKLVSDEIIINLLSKRLEAGEAK 138 (289)
Q Consensus 73 ~~~~Ivl~GppGsGKSTlak~La~~lg~~~i~~d~l~~~~--------------l~~g~~v~~~~~~~ll~~~l~~~~~~ 138 (289)
.+++|+|+|+|||||||+|+.|++.+|+++++.|++++.. +..|...+++....++...+...
T Consensus 5 ~~~~I~l~G~~GsGKsT~~~~L~~~l~~~~i~~d~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~l~~~i~~~--- 81 (194)
T 1qf9_A 5 KPNVVFVLGGPGSGKGTQCANIVRDFGWVHLSAGDLLRQEQQSGSKDGEMIATMIKNGEIVPSIVTVKLLKNAIDAN--- 81 (194)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHTTCTTHHHHHHHHHTTCCCCHHHHHHHHHHHHHTS---
T ss_pred cCcEEEEECCCCCCHHHHHHHHHHHhCCeEeeHHHHHHHHHhcCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhc---
Confidence 3568999999999999999999999999999998887433 34566667777777777766543
Q ss_pred CCceEEEcCcccH----HHHhh-cC---CCcEEEEEecCHHHHHHHHhcccccccCCCccccccccccCCCCCCCCCCCC
Q 022951 139 GEAGFILDGFPRT----EILEG-VT---DIDLVINLKLREEALLAKCLGRRICSECGGNYNVACIDIKGENGNPGMYMGP 210 (289)
Q Consensus 139 ~~~g~Ildg~p~~----~~l~~-~~---~~d~vI~Ld~~~e~l~~Rl~~R~~~~~~g~~y~~~~~~~~~~~~~~~~~~~~ 210 (289)
.+.++|+||+|.. +.+.. +. .+|++|||++|++++.+|+.+|...
T Consensus 82 ~~~~vi~d~~~~~~~~~~~~~~~~~~~~~~~~vi~l~~~~e~~~~R~~~R~~~--------------------------- 134 (194)
T 1qf9_A 82 QGKNFLVDGFPRNEENNNSWEENMKDFVDTKFVLFFDCPEEVMTQRLLKRGES--------------------------- 134 (194)
T ss_dssp TTCCEEEETCCCSHHHHHHHHHHHTTTCEEEEEEEEECCHHHHHHHHHHHHTT---------------------------
T ss_pred CCCCEEEeCcCCCHHHHHHHHHHHhccCCCCEEEEEECCHHHHHHHHHhcccc---------------------------
Confidence 2568999999876 22321 12 4789999999999999999988421
Q ss_pred CCCCCccccCccccCCCcHHHHHHHHHHHHHhchHHHHHHHHcCcEEEEeCCCCcccHHHHHHHHhcc
Q 022951 211 LLPPPHCASKLITRSDDKEEVVRERLRIYNEKSRPVEEFYRRRGKLLEFDLPGGIPESWPKLLQALNL 278 (289)
Q Consensus 211 ~~~~~~~~~~L~~r~~d~~~~~~~rl~~y~~~~~~l~~~y~~~~~l~~id~~~~~~ev~~~i~~~l~~ 278 (289)
..|.++..+.+.+|++.|.+...++.++|...+.++.||+++++++++++|.+.+..
T Consensus 135 -----------~~r~~~~~~~~~~ri~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~i~~~l~~ 191 (194)
T 1qf9_A 135 -----------SGRSDDNIESIKKRFNTFNVQTKLVIDHYNKFDKVKIIPANRDVNEVYNDVENLFKS 191 (194)
T ss_dssp -----------SCCTTCSHHHHHHHHHHHHHTHHHHHHHHHHTTCEEEEECSSCHHHHHHHHHHHHHH
T ss_pred -----------CCCCCCCHHHHHHHHHHHHHhHHHHHHHHHhCCCEEEEECCCCHHHHHHHHHHHHHH
Confidence 124566788999999999999889989998777788999999999999999998864
No 19
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=99.90 E-value=1.7e-22 Score=171.26 Aligned_cols=166 Identities=30% Similarity=0.525 Sum_probs=132.2
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHHHhCCCeeehHHHHHH--------------HHHcCCccCHHHHHHHHHHHHHcccccC
Q 022951 74 HVQWVFLGCPGVGKGTYASRLSNLLGVPHIATGDLLDE--------------IVSQGKLVSDEIIINLLSKRLEAGEAKG 139 (289)
Q Consensus 74 ~~~Ivl~GppGsGKSTlak~La~~lg~~~i~~d~l~~~--------------~l~~g~~v~~~~~~~ll~~~l~~~~~~~ 139 (289)
+++|+|+|+|||||||+|+.|++.+|+.++++|++++. ++..|..++++....++...+......
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~~l~~~~i~~d~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~i~~~~~~- 90 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVEKYGFTHLSTGELLREELASESERSKLIRDIMERGDLVPSGIVLELLKEAMVASLGD- 90 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHHTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHTTS-
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCeEEcHHHHHHHHHHhCCHHHHHHHHHHHcCCcCCHHHHHHHHHHHHhccccc-
Confidence 46899999999999999999999999999999888732 344677788887777777666543222
Q ss_pred CceEEEcCcccH----HHHhh-cCCCcEEEEEecCHHHHHHHHhcccccccCCCccccccccccCCCCCCCCCCCCCCCC
Q 022951 140 EAGFILDGFPRT----EILEG-VTDIDLVINLKLREEALLAKCLGRRICSECGGNYNVACIDIKGENGNPGMYMGPLLPP 214 (289)
Q Consensus 140 ~~g~Ildg~p~~----~~l~~-~~~~d~vI~Ld~~~e~l~~Rl~~R~~~~~~g~~y~~~~~~~~~~~~~~~~~~~~~~~~ 214 (289)
+.+||+||++.. +.|.. +..+|++|||++|++++.+|+.+|....
T Consensus 91 ~~~vi~dg~~~~~~~~~~l~~~~~~~~~~i~l~~~~~~~~~R~~~R~~~~------------------------------ 140 (199)
T 2bwj_A 91 TRGFLIDGYPREVKQGEEFGRRIGDPQLVICMDCSADTMTNRLLQMSRSS------------------------------ 140 (199)
T ss_dssp CSCEEEETCCSSHHHHHHHHHHTCCCSEEEEEECCHHHHHHHHHHTCCCC------------------------------
T ss_pred CccEEEeCCCCCHHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHcCCCCC------------------------------
Confidence 568999999876 22332 2258999999999999999999885210
Q ss_pred CccccCccccCCCcHHHHHHHHHHHHHhchHHHHHHHHcCcEEEEeCCCCcccHHHHHHHHhcc
Q 022951 215 PHCASKLITRSDDKEEVVRERLRIYNEKSRPVEEFYRRRGKLLEFDLPGGIPESWPKLLQALNL 278 (289)
Q Consensus 215 ~~~~~~L~~r~~d~~~~~~~rl~~y~~~~~~l~~~y~~~~~l~~id~~~~~~ev~~~i~~~l~~ 278 (289)
.+.+++.+.+.+|+..|.....++.++|...+.++.||+++++++++.+|.+.+..
T Consensus 141 --------~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~id~~~~~e~v~~~i~~~l~~ 196 (199)
T 2bwj_A 141 --------LPVDDTTKTIAKRLEAYYRASIPVIAYYETKTQLHKINAEGTPEDVFLQLCTAIDS 196 (199)
T ss_dssp --------SCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSEEEEEETTSCHHHHHHHHHHHHHH
T ss_pred --------CCCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEECCCCHHHHHHHHHHHHHH
Confidence 12344567899999999999999888998777788999999999999999998854
No 20
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=99.88 E-value=1.1e-21 Score=164.93 Aligned_cols=160 Identities=41% Similarity=0.667 Sum_probs=125.7
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhCCCeeehHHHHHH--------------HHHcCCccCHHHHHHHHHHHHHccccc
Q 022951 73 KHVQWVFLGCPGVGKGTYASRLSNLLGVPHIATGDLLDE--------------IVSQGKLVSDEIIINLLSKRLEAGEAK 138 (289)
Q Consensus 73 ~~~~Ivl~GppGsGKSTlak~La~~lg~~~i~~d~l~~~--------------~l~~g~~v~~~~~~~ll~~~l~~~~~~ 138 (289)
++++|+|+|+|||||||+++.|++.+|++++++|++++. ++..|...+++.....+...+.
T Consensus 3 ~g~~I~l~G~~GsGKST~~~~La~~l~~~~i~~d~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~l~----- 77 (186)
T 3cm0_A 3 VGQAVIFLGPPGAGKGTQASRLAQELGFKKLSTGDILRDHVARGTPLGERVRPIMERGDLVPDDLILELIREELA----- 77 (186)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHHHHHTCEEECHHHHHHHHHHTTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHCC-----
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCeEecHHHHHHHHHHcCChHHHHHHHHHHcCCcCCHHHHHHHHHHHhc-----
Confidence 457899999999999999999999999999999887743 2445666777766665554432
Q ss_pred CCceEEEcCcccH----HHHhhc-----CCCcEEEEEecCHHHHHHHHhcccccccCCCccccccccccCCCCCCCCCCC
Q 022951 139 GEAGFILDGFPRT----EILEGV-----TDIDLVINLKLREEALLAKCLGRRICSECGGNYNVACIDIKGENGNPGMYMG 209 (289)
Q Consensus 139 ~~~g~Ildg~p~~----~~l~~~-----~~~d~vI~Ld~~~e~l~~Rl~~R~~~~~~g~~y~~~~~~~~~~~~~~~~~~~ 209 (289)
.++|+||++.. ..++.+ ..++.+|||++|++++.+|+.+|...
T Consensus 78 --~~~i~dg~~~~~~~~~~l~~~l~~~~~~~~~vi~l~~~~e~~~~R~~~R~~~-------------------------- 129 (186)
T 3cm0_A 78 --ERVIFDGFPRTLAQAEALDRLLSETGTRLLGVVLVEVPEEELVRRILRRAEL-------------------------- 129 (186)
T ss_dssp --SEEEEESCCCSHHHHHHHHHHHHHTTEEEEEEEEEECCHHHHHHHHHHHHHH--------------------------
T ss_pred --CCEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHHhcccc--------------------------
Confidence 25999998876 222221 13789999999999999999887410
Q ss_pred CCCCCCccccCccccCCCcHHHHHHHHHHHHHhchHHHHHHHHcCcEEEEeCCCCcccHHHHHHHHhc
Q 022951 210 PLLPPPHCASKLITRSDDKEEVVRERLRIYNEKSRPVEEFYRRRGKLLEFDLPGGIPESWPKLLQALN 277 (289)
Q Consensus 210 ~~~~~~~~~~~L~~r~~d~~~~~~~rl~~y~~~~~~l~~~y~~~~~l~~id~~~~~~ev~~~i~~~l~ 277 (289)
..|.+++.+.+++|+..|.....++.++|...+.++.||+++++++++++|.+.++
T Consensus 130 ------------~~r~~~~~~~~~~r~~~~~~~~~~l~~~~~~~~~~~~id~~~~~~~v~~~i~~~l~ 185 (186)
T 3cm0_A 130 ------------EGRSDDNEETVRRRLEVYREKTEPLVGYYEARGVLKRVDGLGTPDEVYARIRAALG 185 (186)
T ss_dssp ------------HTCSSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEECCSCHHHHHHHHHHHHT
T ss_pred ------------CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcEEEEECCCCHHHHHHHHHHHhc
Confidence 01345678889999999998888888999877778999999999999999998874
No 21
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=99.88 E-value=5.9e-21 Score=168.23 Aligned_cols=193 Identities=34% Similarity=0.593 Sum_probs=149.7
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhCCCeeehHHHHHH--------------HHHcCCccCHHHHHHHHHHHHHccccc
Q 022951 73 KHVQWVFLGCPGVGKGTYASRLSNLLGVPHIATGDLLDE--------------IVSQGKLVSDEIIINLLSKRLEAGEAK 138 (289)
Q Consensus 73 ~~~~Ivl~GppGsGKSTlak~La~~lg~~~i~~d~l~~~--------------~l~~g~~v~~~~~~~ll~~~l~~~~~~ 138 (289)
++.+|+|+||+||||||+++.|++++|+.+++.++++.. ++..+..+++....+.+...+....
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~~~~~~G~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~v~~~l~~~l~~~~-- 103 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNFGLQHLSSGHFLRENIKASTEVGEMAKQYIEKSLLVPDHVITRLMMSELENRR-- 103 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCCCEEHHHHHHHHHHTTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTCT--
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCeEecHHHHHHHHHhcCChHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhcC--
Confidence 467899999999999999999999999999998887632 2345666777666666665554321
Q ss_pred CCceEEEcCcccH----HHHhhcCCCcEEEEEecCHHHHHHHHhcccccccCCCccccccccccCCCCCCCCCCCCCCCC
Q 022951 139 GEAGFILDGFPRT----EILEGVTDIDLVINLKLREEALLAKCLGRRICSECGGNYNVACIDIKGENGNPGMYMGPLLPP 214 (289)
Q Consensus 139 ~~~g~Ildg~p~~----~~l~~~~~~d~vI~Ld~~~e~l~~Rl~~R~~~~~~g~~y~~~~~~~~~~~~~~~~~~~~~~~~ 214 (289)
+.+||+||+++. +.+..+..++++|||++|++.+++|+.+|..+..+|+.+.+. ..+|
T Consensus 104 -~~~~il~g~~~~~~~~~~l~~~~~~~~vi~L~~~~~~~l~r~~~r~~~~lSgrv~al~-----------------~~~P 165 (246)
T 2bbw_A 104 -GQHWLLDGFPRTLGQAEALDKICEVDLVISLNIPFETLKDRLSRRWIHPPSGRVYNLD-----------------FNPP 165 (246)
T ss_dssp -TSCEEEESCCCSHHHHHHHHTTCCCCEEEEEECCHHHHHHHHHTEEEETTTTEEEETT-----------------TSCC
T ss_pred -CCeEEEECCCCCHHHHHHHHhhcCCCEEEEEECCHHHHHHHHHcCCCcCCCCCccccc-----------------cCCC
Confidence 357999998875 233334568999999999999999999998877777654431 1122
Q ss_pred C------ccccCccccCCCcHHHHHHHHHHHHHhchHHHHHHHHcCcEEEEeCCCCcccHHHHHHHHhccCCcchhhh
Q 022951 215 P------HCASKLITRSDDKEEVVRERLRIYNEKSRPVEEFYRRRGKLLEFDLPGGIPESWPKLLQALNLEDPEDKQS 286 (289)
Q Consensus 215 ~------~~~~~L~~r~~d~~~~~~~rl~~y~~~~~~l~~~y~~~~~l~~id~~~~~~ev~~~i~~~l~~~~~~~~~~ 286 (289)
+ .|.+++..+.+++.+.+.+++..|.+...++.++|.+.+.++.||++++ ++++.+|.++|........++
T Consensus 166 ~~lllD~~~~EP~~~ld~~~~~~i~~~l~~~~~~~~~v~~~~~~~~~~~~id~~~~-~~v~~~i~~~l~~~~~~~~~~ 242 (246)
T 2bbw_A 166 HVHGIDDVTGEPLVQQEDDKPEAVAARLRQYKDVAKPVIELYKSRGVLHQFSGTET-NKIWPYVYTLFSNKITPIQSK 242 (246)
T ss_dssp SSTTBCTTTCCBCBCCGGGSHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEECSCH-HHHHHHHHHHHHTTSCCCCCG
T ss_pred cccccccccccccccCCCCcHHHHHHHHHHHHHhHHHHHHHHhhcCcEEEECCCCc-HHHHHHHHHHHHhhCCCCCcc
Confidence 1 2447788777788899999999999999999999998889999999988 999999999998766544433
No 22
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=99.70 E-value=2.4e-16 Score=129.67 Aligned_cols=156 Identities=15% Similarity=0.138 Sum_probs=102.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhCCCeeehHHHHHHHHHcCCc---------------cCHHHHHHHHHHHHHcccccC
Q 022951 75 VQWVFLGCPGVGKGTYASRLSNLLGVPHIATGDLLDEIVSQGKL---------------VSDEIIINLLSKRLEAGEAKG 139 (289)
Q Consensus 75 ~~Ivl~GppGsGKSTlak~La~~lg~~~i~~d~l~~~~l~~g~~---------------v~~~~~~~ll~~~l~~~~~~~ 139 (289)
++|+|+|+|||||||+|+.| +.+|+.++++++++++.+..+.. .....+...+...+.. ..
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L-~~~g~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~---~~ 77 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL-KERGAKVIVMSDVVRKRYSIEAKPGERLMDFAKRLREIYGDGVVARLCVEELGT---SN 77 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH-HHTTCEEEEHHHHHHHHHHHHC---CCHHHHHHHHHHHHCTTHHHHHHHHHHCS---CC
T ss_pred cEEEEECCCCCCHHHHHHHH-HHCCCcEEEHhHHHHHHHHhcCCChhHHHHHHHHHHhhCCHHHHHHHHHHHHHh---cC
Confidence 68999999999999999999 99999999999998665433210 1112223333333322 12
Q ss_pred CceEEEcCcccH---HHHhhc-CCCcEEEEEecCHHHHHHHHhcccccccCCCccccccccccCCCCCCCCCCCCCCCCC
Q 022951 140 EAGFILDGFPRT---EILEGV-TDIDLVINLKLREEALLAKCLGRRICSECGGNYNVACIDIKGENGNPGMYMGPLLPPP 215 (289)
Q Consensus 140 ~~g~Ildg~p~~---~~l~~~-~~~d~vI~Ld~~~e~l~~Rl~~R~~~~~~g~~y~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (289)
+..||+||+... +.+... ..++++|||++|.+++.+|+..|...
T Consensus 78 ~~~vi~dg~~~~~~~~~l~~~~~~~~~~i~l~~~~~~~~~R~~~R~~~-------------------------------- 125 (179)
T 3lw7_A 78 HDLVVFDGVRSLAEVEEFKRLLGDSVYIVAVHSPPKIRYKRMIERLRS-------------------------------- 125 (179)
T ss_dssp CSCEEEECCCCHHHHHHHHHHHCSCEEEEEEECCHHHHHHHHHTCC----------------------------------
T ss_pred CCeEEEeCCCCHHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHhccCC--------------------------------
Confidence 568999998332 334333 25789999999999999999988421
Q ss_pred ccccCccccCCCcHHHHHHHHHHHHHhchHHHHHHHHcCcEEEEeCCCCcccHHHHHHHHhcc
Q 022951 216 HCASKLITRSDDKEEVVRERLRIYNEKSRPVEEFYRRRGKLLEFDLPGGIPESWPKLLQALNL 278 (289)
Q Consensus 216 ~~~~~L~~r~~d~~~~~~~rl~~y~~~~~~l~~~y~~~~~l~~id~~~~~~ev~~~i~~~l~~ 278 (289)
....+.+.+.+|+...... ++..++. ... +.||++++++++.++|.+++..
T Consensus 126 --------~~~~~~~~~~~r~~~~~~~--~~~~~~~-~ad-~vId~~~~~~~~~~~i~~~l~~ 176 (179)
T 3lw7_A 126 --------DDSKEISELIRRDREELKL--GIGEVIA-MAD-YIITNDSNYEEFKRRCEEVTDR 176 (179)
T ss_dssp ----------CCCHHHHHHHHHHHHHH--THHHHHH-TCS-EEEECCSCHHHHHHHHHHHHHH
T ss_pred --------CCcchHHHHHHHHHhhhcc--ChHhHHH-hCC-EEEECCCCHHHHHHHHHHHHHH
Confidence 0123456666666432221 1223332 222 4678888999999999998864
No 23
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=99.66 E-value=3.9e-15 Score=124.98 Aligned_cols=153 Identities=22% Similarity=0.313 Sum_probs=97.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHh---CCCeeehH--------HHHHHHHHcCCccCHHHHH-------HHHHHHHHccc
Q 022951 75 VQWVFLGCPGVGKGTYASRLSNLL---GVPHIATG--------DLLDEIVSQGKLVSDEIII-------NLLSKRLEAGE 136 (289)
Q Consensus 75 ~~Ivl~GppGsGKSTlak~La~~l---g~~~i~~d--------~l~~~~l~~g~~v~~~~~~-------~ll~~~l~~~~ 136 (289)
|+|+|+|+|||||||+++.|++.+ |+++++++ +.+.+++..|...+..... ..+...+....
T Consensus 1 ~~I~l~G~~GsGKsT~~~~L~~~l~~~g~~~i~~d~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~~~l~~~i~~~l 80 (195)
T 2pbr_A 1 MLIAFEGIDGSGKTTQAKKLYEYLKQKGYFVSLYREPGGTKVGEVLREILLTEELDERTELLLFEASRSKLIEEKIIPDL 80 (195)
T ss_dssp CEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEESSCSSHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCCCchHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 579999999999999999999998 99999863 3445666666544432211 11111111111
Q ss_pred ccCCceEEEc----------CcccH---HHHhh-------cCCCcEEEEEecCHHHHHHHHhcccccccCCCcccccccc
Q 022951 137 AKGEAGFILD----------GFPRT---EILEG-------VTDIDLVINLKLREEALLAKCLGRRICSECGGNYNVACID 196 (289)
Q Consensus 137 ~~~~~g~Ild----------g~p~~---~~l~~-------~~~~d~vI~Ld~~~e~l~~Rl~~R~~~~~~g~~y~~~~~~ 196 (289)
.. +..+|+| |+++. ..+.. ...+|++|||++|++++.+|+.+|.
T Consensus 81 ~~-~~~vi~dr~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~d~vi~l~~~~e~~~~Rl~~r~--------------- 144 (195)
T 2pbr_A 81 KR-DKVVILDRFVLSTIAYQGYGKGLDVEFIKNLNEFATRGVKPDITLLLDIPVDIALRRLKEKN--------------- 144 (195)
T ss_dssp HT-TCEEEEESCHHHHHHHHTTTTCCCHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHHHHTTT---------------
T ss_pred hC-CCEEEECcchhHHHHHccccCCCCHHHHHHHHHHhhcCCCCCEEEEEeCCHHHHHHHhhccC---------------
Confidence 11 3467887 44443 11111 1258999999999999999998642
Q ss_pred ccCCCCCCCCCCCCCCCCCccccCccccCCCcHHHHHHHH-HHHHHhchHHHHHHHHcCcEEEEeCCCCcccHHHHHHHH
Q 022951 197 IKGENGNPGMYMGPLLPPPHCASKLITRSDDKEEVVRERL-RIYNEKSRPVEEFYRRRGKLLEFDLPGGIPESWPKLLQA 275 (289)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~L~~r~~d~~~~~~~rl-~~y~~~~~~l~~~y~~~~~l~~id~~~~~~ev~~~i~~~ 275 (289)
+.+ ..+ +.+++ ..|.+.. .+| +.++.||+++++++++++|.+.
T Consensus 145 ---------------------------~~~-~~~-~~~~~~~~~~~~~----~~~---~~~~~Id~~~~~~~~~~~i~~~ 188 (195)
T 2pbr_A 145 ---------------------------RFE-NKE-FLEKVRKGFLELA----KEE---ENVVVIDASGEEEEVFKEILRA 188 (195)
T ss_dssp ---------------------------CCC-CHH-HHHHHHHHHHHHH----HHS---TTEEEEETTSCHHHHHHHHHHH
T ss_pred ---------------------------ccc-hHH-HHHHHHHHHHHHH----hhC---CCEEEEECCCCHHHHHHHHHHH
Confidence 111 233 34444 3444432 222 4578999999999999999998
Q ss_pred hccC
Q 022951 276 LNLE 279 (289)
Q Consensus 276 l~~~ 279 (289)
+..-
T Consensus 189 l~~~ 192 (195)
T 2pbr_A 189 LSGV 192 (195)
T ss_dssp HHTT
T ss_pred HHHH
Confidence 8643
No 24
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=99.66 E-value=5.1e-15 Score=124.03 Aligned_cols=157 Identities=17% Similarity=0.238 Sum_probs=96.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhC-----CCeeehHHHHHHHH-HcCCc--------cCHH---HHHHHHHHHHHccc-
Q 022951 75 VQWVFLGCPGVGKGTYASRLSNLLG-----VPHIATGDLLDEIV-SQGKL--------VSDE---IIINLLSKRLEAGE- 136 (289)
Q Consensus 75 ~~Ivl~GppGsGKSTlak~La~~lg-----~~~i~~d~l~~~~l-~~g~~--------v~~~---~~~~ll~~~l~~~~- 136 (289)
++|+|+|+|||||||+++.|+++++ +.+++.++++.+.+ ..+-. ...+ .+...+...+....
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~ 81 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKEILDNQGINNKIINYGDFMLATALKLGYAKDRDEMRKLSVEKQKKLQIDAAKGIAEEAR 81 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHHTTTCCEEEEEHHHHHHHHHHTTTSCSSHHHHTTSCHHHHHHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhcCceEEEEECChHHHHHHHhcccccchhhhhcCCHHHHHHHHHHHHHHHHHHhh
Confidence 5799999999999999999999998 88999888886554 22211 1112 11111222222211
Q ss_pred ccCCceEEEcCcccH------------HHHhhcCCCcEEEEEecCHHHHHHH-Hhc--ccccccCCCccccccccccCCC
Q 022951 137 AKGEAGFILDGFPRT------------EILEGVTDIDLVINLKLREEALLAK-CLG--RRICSECGGNYNVACIDIKGEN 201 (289)
Q Consensus 137 ~~~~~g~Ildg~p~~------------~~l~~~~~~d~vI~Ld~~~e~l~~R-l~~--R~~~~~~g~~y~~~~~~~~~~~ 201 (289)
...+..||+||++.. +.+..+ .++.+|||++|++++++| +.+ |...
T Consensus 82 ~~~~~~vi~d~~~~~~~~~~~~~~~~~~~~~~~-~~~~vi~l~~~~~~~~~rr~~~~~R~~~------------------ 142 (194)
T 1nks_A 82 AGGEGYLFIDTHAVIRTPSGYLPGLPSYVITEI-NPSVIFLLEADPKIILSRQKRDTTRNRN------------------ 142 (194)
T ss_dssp HTCSSEEEEEECSEEEETTEEEESSCHHHHHHH-CCSEEEEEECCHHHHHHHHHHCTTTCCC------------------
T ss_pred ccCCCEEEECCchhhccccccccCCCHHHHHhc-CCCEEEEEeCCHHHHHHHHHhhcccCCC------------------
Confidence 011568999986431 233333 479999999999998866 766 5310
Q ss_pred CCCCCCCCCCCCCCccccCccccCCCcHHHH--HHHHHHHHHhchHHHHHHHHcCcEEEE-eCCCCcccHHHHHHHHhc
Q 022951 202 GNPGMYMGPLLPPPHCASKLITRSDDKEEVV--RERLRIYNEKSRPVEEFYRRRGKLLEF-DLPGGIPESWPKLLQALN 277 (289)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~L~~r~~d~~~~~--~~rl~~y~~~~~~l~~~y~~~~~l~~i-d~~~~~~ev~~~i~~~l~ 277 (289)
+....+.+ .+++.... ..+...|. ...++.| |+++++++++++|.+.|.
T Consensus 143 -----------------------~~~~~~~~~~~~~~~~~~---~~~~~~~~-~~~~~~I~d~~~~~e~v~~~I~~~l~ 194 (194)
T 1nks_A 143 -----------------------DYSDESVILETINFARYA---ATASAVLA-GSTVKVIVNVEGDPSIAANEIIRSMK 194 (194)
T ss_dssp -----------------------CCCSHHHHHHHHHHHHHH---HHHHHHHH-TCEEEEEECCSSCHHHHHHHHHHHHC
T ss_pred -----------------------CccCHHHHHHHHHHHHHH---HHHHHHhc-CCcEEEEeCCCCCHHHHHHHHHHHhC
Confidence 01112222 22232222 22233332 3567889 999999999999998763
No 25
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=99.66 E-value=4.2e-15 Score=124.47 Aligned_cols=103 Identities=18% Similarity=0.292 Sum_probs=69.8
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHHHhC-----CCeeehHHHHHHHHHc-CCc--------cCH---HHHHHHHHHHHHccc
Q 022951 74 HVQWVFLGCPGVGKGTYASRLSNLLG-----VPHIATGDLLDEIVSQ-GKL--------VSD---EIIINLLSKRLEAGE 136 (289)
Q Consensus 74 ~~~Ivl~GppGsGKSTlak~La~~lg-----~~~i~~d~l~~~~l~~-g~~--------v~~---~~~~~ll~~~l~~~~ 136 (289)
+++|+|+|+|||||||+++.|+++++ +.+++.++++++.+.. |.. ... ..+...+...+....
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~i~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 82 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLAMDNLRKEGVNYKMVSFGSVMFEVAKEENLVSDRDQMRKMDPETQKRIQKMAGRKIAEMA 82 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHHTTTCCCEEEEHHHHHHHHHHHTTSCSSGGGGSSCCHHHHHHHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhcCcceEEEehHHHHHHHHhccCCCCCHHHHhcCCHHHHHHHHHHHHHHHHhhc
Confidence 46899999999999999999999998 9999999988665432 221 111 111222222232211
Q ss_pred ccCCceEEEcCcccH------------HHHhhcCCCcEEEEEecCHHHHHH-HHhc
Q 022951 137 AKGEAGFILDGFPRT------------EILEGVTDIDLVINLKLREEALLA-KCLG 179 (289)
Q Consensus 137 ~~~~~g~Ildg~p~~------------~~l~~~~~~d~vI~Ld~~~e~l~~-Rl~~ 179 (289)
. +..||+||++.. +.+..+ .++++|||++|++++++ |+..
T Consensus 83 -~-~~~viid~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~l~~~~~~~~~rRl~~ 135 (192)
T 1kht_A 83 -K-ESPVAVDTHSTVSTPKGYLPGLPSWVLNEL-NPDLIIVVETTGDEILMRRMSD 135 (192)
T ss_dssp -T-TSCEEEECCSEEEETTEEEESSCHHHHHHH-CCSEEEEEECCHHHHHHHHHTS
T ss_pred -c-CCeEEEccceeccccccccccCcHHHHhcc-CCCEEEEEeCCHHHHHHHHhhh
Confidence 1 357999986531 222332 47899999999999996 8977
No 26
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=99.66 E-value=9.8e-16 Score=130.48 Aligned_cols=160 Identities=17% Similarity=0.189 Sum_probs=101.5
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhCCCeeehHHHHHHHHHcCCccCH-------HHHHHHHHHHHHcccccCCceEEE
Q 022951 73 KHVQWVFLGCPGVGKGTYASRLSNLLGVPHIATGDLLDEIVSQGKLVSD-------EIIINLLSKRLEAGEAKGEAGFIL 145 (289)
Q Consensus 73 ~~~~Ivl~GppGsGKSTlak~La~~lg~~~i~~d~l~~~~l~~g~~v~~-------~~~~~ll~~~l~~~~~~~~~g~Il 145 (289)
++.+|+|+|+|||||||+++.|++.+|+.+++.|+++.... |..+.+ ..+..+-...+..... ..++|+
T Consensus 24 ~~~~i~l~G~~GsGKsTl~~~La~~l~~~~i~~d~~~~~~~--g~~i~~~~~~~~~~~~~~~e~~~l~~l~~--~~~~vi 99 (199)
T 3vaa_A 24 AMVRIFLTGYMGAGKTTLGKAFARKLNVPFIDLDWYIEERF--HKTVGELFTERGEAGFRELERNMLHEVAE--FENVVI 99 (199)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHHTCCEEEHHHHHHHHH--TSCHHHHHHHHHHHHHHHHHHHHHHHHTT--CSSEEE
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHcCCCEEcchHHHHHHh--CCcHHHHHHhcChHHHHHHHHHHHHHHhh--cCCcEE
Confidence 45689999999999999999999999999999999885432 222211 1111111122222111 346677
Q ss_pred c---CcccH-HHHhhcCCCcEEEEEecCHHHHHHHHh-cccccccCCCccccccccccCCCCCCCCCCCCCCCCCccccC
Q 022951 146 D---GFPRT-EILEGVTDIDLVINLKLREEALLAKCL-GRRICSECGGNYNVACIDIKGENGNPGMYMGPLLPPPHCASK 220 (289)
Q Consensus 146 d---g~p~~-~~l~~~~~~d~vI~Ld~~~e~l~~Rl~-~R~~~~~~g~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (289)
+ |.+.. +.++.+..++.+|||++|.+++.+|+. .|...+
T Consensus 100 ~~ggg~~~~~~~~~~l~~~~~vi~L~~~~e~l~~Rl~~~~~~Rp------------------------------------ 143 (199)
T 3vaa_A 100 STGGGAPCFYDNMEFMNRTGKTVFLNVHPDVLFRRLRIAKQQRP------------------------------------ 143 (199)
T ss_dssp ECCTTGGGSTTHHHHHHHHSEEEEEECCHHHHHHHHHHTGGGCG------------------------------------
T ss_pred ECCCcEEccHHHHHHHHcCCEEEEEECCHHHHHHHHhcCCCCCC------------------------------------
Confidence 6 33333 333333346899999999999999998 553221
Q ss_pred ccccCCCcHHHHHHHHHHHHHhchHHHHHHHHcCcEEEEeCCC-CcccHHHHHHHHhccC
Q 022951 221 LITRSDDKEEVVRERLRIYNEKSRPVEEFYRRRGKLLEFDLPG-GIPESWPKLLQALNLE 279 (289)
Q Consensus 221 L~~r~~d~~~~~~~rl~~y~~~~~~l~~~y~~~~~l~~id~~~-~~~ev~~~i~~~l~~~ 279 (289)
+. .++..+.+.+++..+..... .+|.. .-+.||+++ ++++++++|.+.|...
T Consensus 144 ~~--~~~~~~~~~~~i~~~~~~r~---~~y~~--ad~~Idt~~~s~ee~~~~I~~~l~~~ 196 (199)
T 3vaa_A 144 IL--QGKEDDELMDFIIQALEKRA---PFYTQ--AQYIFNADELEDRWQIESSVQRLQEL 196 (199)
T ss_dssp GG--TTCCHHHHHHHHHHHHHHHH---HHHTT--SSEEEECCCCSSHHHHHHHHHHHHHH
T ss_pred Cc--CCCChhhHHHHHHHHHHHHH---HHHhh--CCEEEECCCCCHHHHHHHHHHHHHHH
Confidence 00 12334556666655555433 35554 245688776 8999999999988653
No 27
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=99.65 E-value=4.3e-15 Score=129.86 Aligned_cols=164 Identities=19% Similarity=0.133 Sum_probs=103.6
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhC--CCeeeh--------HHHHHHHHHcCCccCHHHHHHHH-HHHHHc------c
Q 022951 73 KHVQWVFLGCPGVGKGTYASRLSNLLG--VPHIAT--------GDLLDEIVSQGKLVSDEIIINLL-SKRLEA------G 135 (289)
Q Consensus 73 ~~~~Ivl~GppGsGKSTlak~La~~lg--~~~i~~--------d~l~~~~l~~g~~v~~~~~~~ll-~~~l~~------~ 135 (289)
+.++|+|+|+|||||||+++.|++.++ +.++.+ ++.+++++..+.........-+. ..+... .
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~~l~~~~~~~~~~~p~~~~~g~~i~~~~~~~~~~~~~~~~ll~~a~r~~~~~~~i~~ 104 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYHRLVKDYDVIMTREPGGVPTGEEIRKIVLEGNDMDIRTEAMLFAASRREHLVLKVIP 104 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHHTTTSCEEEECTTTTCHHHHHHHHHTTC---CCHHHHHHHHHHHHHHHCCCCCHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHhcCCCceeecCCCCCchHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 568999999999999999999999986 455532 45667777776654433221111 111111 0
Q ss_pred cccCCceEEEc----------CcccH---H---HHhh----cCCCcEEEEEecCHHHHHHHHhcccccccCCCccccccc
Q 022951 136 EAKGEAGFILD----------GFPRT---E---ILEG----VTDIDLVINLKLREEALLAKCLGRRICSECGGNYNVACI 195 (289)
Q Consensus 136 ~~~~~~g~Ild----------g~p~~---~---~l~~----~~~~d~vI~Ld~~~e~l~~Rl~~R~~~~~~g~~y~~~~~ 195 (289)
....+..||+| |+++. + .+.. ...||++|||++|++++.+|+.+|...
T Consensus 105 ~l~~g~~Vi~DRy~~s~~ayqg~~r~~~~~~~~~l~~~~~~~~~pd~vi~L~~~~e~~~~R~~~R~~~------------ 172 (229)
T 4eaq_A 105 ALKEGKVVLCDRYIDSSLAYQGYARGIGVEEVRALNEFAINGLYPDLTIYLNVSAEVGRERIIKNSRD------------ 172 (229)
T ss_dssp HHHTTCEEEEECCHHHHCCCCCCCSCSCHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHHHHHC---------------
T ss_pred HHHCCCEEEECCchhHHHHHHHhhcCCCHHHHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHHhcCCC------------
Confidence 00114579999 77654 1 2222 246999999999999999999988421
Q ss_pred cccCCCCCCCCCCCCCCCCCccccCccccCCCcHHHHHHHHHHHHHhchHHHHHHHHcCcEEEEeCCCCcccHHHHHHHH
Q 022951 196 DIKGENGNPGMYMGPLLPPPHCASKLITRSDDKEEVVRERLRIYNEKSRPVEEFYRRRGKLLEFDLPGGIPESWPKLLQA 275 (289)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~r~~d~~~~~~~rl~~y~~~~~~l~~~y~~~~~l~~id~~~~~~ev~~~i~~~ 275 (289)
..|.++....+.+|+..+.... .+.| .+.++.||+++++++++++|.+.
T Consensus 173 --------------------------~dr~e~~~~~~~~rv~~~y~~l---~~~~--~~~~~vIDa~~s~eev~~~I~~~ 221 (229)
T 4eaq_A 173 --------------------------QNRLDQEDLKFHEKVIEGYQEI---IHNE--SQRFKSVNADQPLENVVEDTYQT 221 (229)
T ss_dssp ----------------------------CCCHHHHHHHHHHHHHHHHH---TTTC--TTTEEEEETTSCHHHHHHHHHHH
T ss_pred --------------------------ccchhhhhHHHHHHHHHHHHHH---HHhC--CCCEEEEeCCCCHHHHHHHHHHH
Confidence 0123333455666665543322 1122 24689999999999999999998
Q ss_pred hccC
Q 022951 276 LNLE 279 (289)
Q Consensus 276 l~~~ 279 (289)
|...
T Consensus 222 l~~~ 225 (229)
T 4eaq_A 222 IIKY 225 (229)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8653
No 28
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=99.65 E-value=2.1e-15 Score=128.41 Aligned_cols=152 Identities=16% Similarity=0.149 Sum_probs=102.4
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhCCCeeehHHHH----HHHHHcCCccCHHHHHH---HHHHHHHcccccCCceEEE
Q 022951 73 KHVQWVFLGCPGVGKGTYASRLSNLLGVPHIATGDLL----DEIVSQGKLVSDEIIIN---LLSKRLEAGEAKGEAGFIL 145 (289)
Q Consensus 73 ~~~~Ivl~GppGsGKSTlak~La~~lg~~~i~~d~l~----~~~l~~g~~v~~~~~~~---ll~~~l~~~~~~~~~g~Il 145 (289)
.+++|+|+|++||||||+++.|++.+|+.+++.|++. ...+..|....+..... .+...+ . .+.++|+
T Consensus 17 ~~~~I~l~G~~GsGKSTla~~L~~~lg~~~i~~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~l~~~~----~-~~~~viv 91 (202)
T 3t61_A 17 FPGSIVVMGVSGSGKSSVGEAIAEACGYPFIEGDALHPPENIRKMSEGIPLTDDDRWPWLAAIGERL----A-SREPVVV 91 (202)
T ss_dssp CSSCEEEECSTTSCHHHHHHHHHHHHTCCEEEGGGGCCHHHHHHHHHTCCCCHHHHHHHHHHHHHHH----T-SSSCCEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCEEEeCCcCcchhhHHHHhcCCCCCchhhHHHHHHHHHHH----h-cCCCEEE
Confidence 3568999999999999999999999999999998875 22334455555443322 222222 1 1457899
Q ss_pred cCcccH----HHHhhcC-CCcEEEEEecCHHHHHHHHhcccccccCCCccccccccccCCCCCCCCCCCCCCCCCccccC
Q 022951 146 DGFPRT----EILEGVT-DIDLVINLKLREEALLAKCLGRRICSECGGNYNVACIDIKGENGNPGMYMGPLLPPPHCASK 220 (289)
Q Consensus 146 dg~p~~----~~l~~~~-~~d~vI~Ld~~~e~l~~Rl~~R~~~~~~g~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (289)
|+.... +.+.... .++.+|||++|.+++.+|+.+|..+.
T Consensus 92 d~~~~~~~~~~~l~~~~~~~~~vi~l~~~~e~~~~Rl~~R~~~~------------------------------------ 135 (202)
T 3t61_A 92 SCSALKRSYRDKLRESAPGGLAFVFLHGSESVLAERMHHRTGHF------------------------------------ 135 (202)
T ss_dssp ECCCCSHHHHHHHHHTSTTCCEEEEEECCHHHHHHHHHHHHSSC------------------------------------
T ss_pred ECCCCCHHHHHHHHHhcCCCeEEEEEeCCHHHHHHHHHHhhccC------------------------------------
Confidence 974333 3344332 34799999999999999999885221
Q ss_pred ccccCCCcHHHHHHHHHHHHHhchHHHHHHHHcCcEEEEeCCCCcccHHHHHHHHhccC
Q 022951 221 LITRSDDKEEVVRERLRIYNEKSRPVEEFYRRRGKLLEFDLPGGIPESWPKLLQALNLE 279 (289)
Q Consensus 221 L~~r~~d~~~~~~~rl~~y~~~~~~l~~~y~~~~~l~~id~~~~~~ev~~~i~~~l~~~ 279 (289)
. ..+.++.+++.+.. + | .....+.||+++++++++.+|.+.|...
T Consensus 136 -----~-~~~~~~~~~~~~~~----~---~-~~~~~~~Id~~~~~~e~~~~I~~~l~~~ 180 (202)
T 3t61_A 136 -----M-PSSLLQTQLETLED----P---R-GEVRTVAVDVAQPLAEIVREALAGLARL 180 (202)
T ss_dssp -----C-CHHHHHHHHHHCCC----C---T-TSTTEEEEESSSCHHHHHHHHHHHHHHH
T ss_pred -----C-CHHHHHHHHHhcCC----C---C-CCCCeEEEeCCCCHHHHHHHHHHHHHHh
Confidence 1 13444444433321 1 1 1234788999999999999999998654
No 29
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=99.63 E-value=5.6e-15 Score=123.68 Aligned_cols=161 Identities=15% Similarity=0.132 Sum_probs=91.0
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHHHhCCCeeehHHHHHHHHHcCCccCH-------HHHHHHHHHHHHcccccCCceEEEc
Q 022951 74 HVQWVFLGCPGVGKGTYASRLSNLLGVPHIATGDLLDEIVSQGKLVSD-------EIIINLLSKRLEAGEAKGEAGFILD 146 (289)
Q Consensus 74 ~~~Ivl~GppGsGKSTlak~La~~lg~~~i~~d~l~~~~l~~g~~v~~-------~~~~~ll~~~l~~~~~~~~~g~Ild 146 (289)
+.+|+|+|+|||||||+++.|++.+|+.+++.|+++.... |..+.+ ..+...-...+...... ...+|..
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l~~~~i~~d~~~~~~~--g~~~~~~~~~~g~~~~~~~~~~~~~~~~~~-~~~vi~~ 81 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLTKRILYDSDKEIEKRT--GADIAWIFEMEGEAGFRRREREMIEALCKL-DNIILAT 81 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHCCCEEEHHHHHHHHH--TSCHHHHHHHHHHHHHHHHHHHHHHHHHHS-SSCEEEC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCCEEEChHHHHHHc--CCChhhHHHHhCHHHHHHHHHHHHHHHHhc-CCcEEec
Confidence 4578999999999999999999999999999999985532 322221 11111111112111111 2244444
Q ss_pred Cc--ccH-HHHhhcCCCcEEEEEecCHHHHHHHH--hcccccccCCCccccccccccCCCCCCCCCCCCCCCCCccccCc
Q 022951 147 GF--PRT-EILEGVTDIDLVINLKLREEALLAKC--LGRRICSECGGNYNVACIDIKGENGNPGMYMGPLLPPPHCASKL 221 (289)
Q Consensus 147 g~--p~~-~~l~~~~~~d~vI~Ld~~~e~l~~Rl--~~R~~~~~~g~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L 221 (289)
|. ... +..+.+....++|||++|.+++.+|+ ..|..
T Consensus 82 gg~~~~~~~~~~~l~~~~~vi~L~~~~e~l~~Rl~~~~~~~--------------------------------------- 122 (185)
T 3trf_A 82 GGGVVLDEKNRQQISETGVVIYLTASIDTQLKRIGQKGEMR--------------------------------------- 122 (185)
T ss_dssp CTTGGGSHHHHHHHHHHEEEEEEECCHHHHHHHHHCCTTCS---------------------------------------
T ss_pred CCceecCHHHHHHHHhCCcEEEEECCHHHHHHHHhhcCCCC---------------------------------------
Confidence 42 222 22222222368999999999999999 43321
Q ss_pred cccCCCcHHHHHHHHHHHHHhchHHHHHHHHcCcEEEEeCCC-CcccHHHHHHHHhccCCcc
Q 022951 222 ITRSDDKEEVVRERLRIYNEKSRPVEEFYRRRGKLLEFDLPG-GIPESWPKLLQALNLEDPE 282 (289)
Q Consensus 222 ~~r~~d~~~~~~~rl~~y~~~~~~l~~~y~~~~~l~~id~~~-~~~ev~~~i~~~l~~~~~~ 282 (289)
|+........+++........ .+|.+... +.||+++ ++++++++|.+.+.....+
T Consensus 123 --rp~~~~~~~~~~l~~~~~~r~---~~y~~~ad-~~Idt~~~~~~e~~~~I~~~l~~~~~~ 178 (185)
T 3trf_A 123 --RPLFIKNNSKEKLQQLNEIRK---PLYQAMAD-LVYPTDDLNPRQLATQILVDIKQTYSD 178 (185)
T ss_dssp --SCCCCCHHHHHHHHHHHHHHH---HHHHHHCS-EEEECTTCCHHHHHHHHHHHSCC----
T ss_pred --CCCCCCCCHHHHHHHHHHHHH---HHHhhcCC-EEEECCCCCHHHHHHHHHHHHHHHhhh
Confidence 111111112223332222222 33433222 5678776 8999999999999876543
No 30
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=99.62 E-value=1.7e-14 Score=121.52 Aligned_cols=155 Identities=18% Similarity=0.200 Sum_probs=94.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHh---CCCeeeh--------HHHHHHHHHcCCccCHHHHH-------HHHHHHHHccc
Q 022951 75 VQWVFLGCPGVGKGTYASRLSNLL---GVPHIAT--------GDLLDEIVSQGKLVSDEIII-------NLLSKRLEAGE 136 (289)
Q Consensus 75 ~~Ivl~GppGsGKSTlak~La~~l---g~~~i~~--------d~l~~~~l~~g~~v~~~~~~-------~ll~~~l~~~~ 136 (289)
|+|+|+|++||||||+++.|++.+ |+.++.+ ++.+++++..+...+..... ..+.. +....
T Consensus 1 ~~I~l~G~~GsGKsT~~~~L~~~l~~~g~~v~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~-i~~~l 79 (197)
T 2z0h_A 1 MFITFEGIDGSGKSTQIQLLAQYLEKRGKKVILKREPGGTETGEKIRKILLEEEVTPKAELFLFLASRNLLVTE-IKQYL 79 (197)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHHCCC-EEEEESSCSSHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHH-HTTC-
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEeeCCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHH-HHHHH
Confidence 579999999999999999999999 9988853 44556666655544332211 11122 22211
Q ss_pred ccCCceEEEcCc----------ccH---H---HH----hhcCCCcEEEEEecCHHHHHHHHhcccccccCCCcccccccc
Q 022951 137 AKGEAGFILDGF----------PRT---E---IL----EGVTDIDLVINLKLREEALLAKCLGRRICSECGGNYNVACID 196 (289)
Q Consensus 137 ~~~~~g~Ildg~----------p~~---~---~l----~~~~~~d~vI~Ld~~~e~l~~Rl~~R~~~~~~g~~y~~~~~~ 196 (289)
.. +..+|+|.| ++. + .+ .....+|.+|||++|++++++|+.+|.
T Consensus 80 ~~-g~~vi~dr~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~l~~~~e~~~~Rl~~R~--------------- 143 (197)
T 2z0h_A 80 SE-GYAVLLDRYTDSSVAYQGFGRNLGKEIVEELNDFATDGLIPDLTFYIDVDVETALKRKGELN--------------- 143 (197)
T ss_dssp ----CEEEEESCHHHHHHHTTTTTCSCHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHHC---C---------------
T ss_pred hC-CCEEEECCChhHHHHHHHhccCCCHHHHHHHHHHhcCCCCCCEEEEEeCCHHHHHHHHhccC---------------
Confidence 11 456788854 221 1 11 112358999999999999999998872
Q ss_pred ccCCCCCCCCCCCCCCCCCccccCccccCCCcHHHHHHHHHHHHHhchHHHHHHHHcCcEEEEeCCCCcccHHHHHHHHh
Q 022951 197 IKGENGNPGMYMGPLLPPPHCASKLITRSDDKEEVVRERLRIYNEKSRPVEEFYRRRGKLLEFDLPGGIPESWPKLLQAL 276 (289)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~L~~r~~d~~~~~~~rl~~y~~~~~~l~~~y~~~~~l~~id~~~~~~ev~~~i~~~l 276 (289)
+.++. +.+++....|.+. ...+ ...++.||+++++++++++|.+.+
T Consensus 144 ---------------------------~~~~~-~~~~~~~~~~~~~----~~~~--~~~~~~Id~~~~~e~~~~~i~~~l 189 (197)
T 2z0h_A 144 ---------------------------RFEKR-EFLERVREGYLVL----AREH--PERIVVLDGKRSIEEIHRDVVREV 189 (197)
T ss_dssp ---------------------------CCCCH-HHHHHHHHHHHHH----HHHC--TTTEEEEETTSCHHHHHHHHHHHT
T ss_pred ---------------------------cccHH-HHHHHHHHHHHHH----HHhC--CCCEEEEeCCCCHHHHHHHHHHHH
Confidence 11222 3333333344442 2222 346889999999999999999999
Q ss_pred ccCC
Q 022951 277 NLED 280 (289)
Q Consensus 277 ~~~~ 280 (289)
....
T Consensus 190 ~~~l 193 (197)
T 2z0h_A 190 KRRW 193 (197)
T ss_dssp TCC-
T ss_pred HHHh
Confidence 7654
No 31
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=99.62 E-value=2.5e-14 Score=123.09 Aligned_cols=159 Identities=18% Similarity=0.160 Sum_probs=97.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHh--CCCeee--------hHHHHHHHHHcCCccCHHHHHHHH--------HHHHHccc
Q 022951 75 VQWVFLGCPGVGKGTYASRLSNLL--GVPHIA--------TGDLLDEIVSQGKLVSDEIIINLL--------SKRLEAGE 136 (289)
Q Consensus 75 ~~Ivl~GppGsGKSTlak~La~~l--g~~~i~--------~d~l~~~~l~~g~~v~~~~~~~ll--------~~~l~~~~ 136 (289)
.+|+|.|+.||||||+++.|++.+ |..++. .++.+++++..+...+.....-+. ...+....
T Consensus 3 kFI~~EG~dGsGKsTq~~~L~~~L~~~~~v~~~~eP~~t~~g~~ir~~l~~~~~~~~~~~~lLf~a~R~~~~~~~i~p~l 82 (205)
T 4hlc_A 3 AFITFEGPEGSGKTTVINEVYHRLVKDYDVIMTREPGGVPTGEEIRKIVLEGNDMDIRTEAMLFAASRREHLVLKVIPAL 82 (205)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHTTTSCEEEEESSTTCHHHHHHHHHHHSSCCCCHHHHHHHHHHHHHHHHHHTHHHHH
T ss_pred CEEEEECCCCCcHHHHHHHHHHHHHCCCCEEEeeCCCCChHHHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 579999999999999999999988 444442 356667777777666554322111 11111111
Q ss_pred ccCCceEEEcCcccH-------------HH---Hh----hcCCCcEEEEEecCHHHHHHHHhcccccccCCCcccccccc
Q 022951 137 AKGEAGFILDGFPRT-------------EI---LE----GVTDIDLVINLKLREEALLAKCLGRRICSECGGNYNVACID 196 (289)
Q Consensus 137 ~~~~~g~Ildg~p~~-------------~~---l~----~~~~~d~vI~Ld~~~e~l~~Rl~~R~~~~~~g~~y~~~~~~ 196 (289)
.. +..||+|.|..+ +. +. ....||++||||+|+++.++|+.+|....
T Consensus 83 ~~-g~~Vi~DRy~~S~~ayq~~~~~~~~~~~~~l~~~~~~~~~PDl~i~Ld~~~e~~~~Ri~~r~~~~------------ 149 (205)
T 4hlc_A 83 KE-GKVVLCDRYIDSSLAYQGYARGIGVEEVRALNEFAINGLYPDLTIYLNVSAEVGRERIIKNSRDQ------------ 149 (205)
T ss_dssp HT-TCEEEEECCHHHHHHHTTTTTSSCHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHHHHC-----------------
T ss_pred Hc-CCEEEecCcccchHHHHhccccchHHHHHHHHHHHhcCCCCCEEeeeCCCHHHHHHHHHhcCCcc------------
Confidence 11 456788876543 11 11 12359999999999999999999885321
Q ss_pred ccCCCCCCCCCCCCCCCCCccccCccccCCCcHHHHHHHHHH-HHHhchHHHHHHHH-cCcEEEEeCCCCcccHHHHHHH
Q 022951 197 IKGENGNPGMYMGPLLPPPHCASKLITRSDDKEEVVRERLRI-YNEKSRPVEEFYRR-RGKLLEFDLPGGIPESWPKLLQ 274 (289)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~L~~r~~d~~~~~~~rl~~-y~~~~~~l~~~y~~-~~~l~~id~~~~~~ev~~~i~~ 274 (289)
.|.+.....+.+++.. |.+ ++.+ ...++.||+++++++|.++|.+
T Consensus 150 --------------------------dr~e~~~~~f~~~v~~~Y~~-------l~~~~~~~~~~IDa~~~~e~V~~~i~~ 196 (205)
T 4hlc_A 150 --------------------------NRLDQEDLKFHEKVIEGYQE-------IIHNESQRFKSVNADQPLENVVEDTYQ 196 (205)
T ss_dssp ----------------------------CCHHHHHHHHHHHHHHHH-------HHHSCCTTEEEEETTSCHHHHHHHHHH
T ss_pred --------------------------cchhccCHHHHHHHHHHHHH-------HHHhCCCCEEEEECCCCHHHHHHHHHH
Confidence 1112112233333332 322 1222 3469999999999999999988
Q ss_pred HhccC
Q 022951 275 ALNLE 279 (289)
Q Consensus 275 ~l~~~ 279 (289)
.|...
T Consensus 197 ~i~~~ 201 (205)
T 4hlc_A 197 TIIKY 201 (205)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 87653
No 32
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=99.61 E-value=6.4e-15 Score=123.36 Aligned_cols=156 Identities=21% Similarity=0.304 Sum_probs=93.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhCCCeeehHHHHHHHHH---------cCCccCHHHHHHHHHHHHHcccccCCceEEE
Q 022951 75 VQWVFLGCPGVGKGTYASRLSNLLGVPHIATGDLLDEIVS---------QGKLVSDEIIINLLSKRLEAGEAKGEAGFIL 145 (289)
Q Consensus 75 ~~Ivl~GppGsGKSTlak~La~~lg~~~i~~d~l~~~~l~---------~g~~v~~~~~~~ll~~~l~~~~~~~~~g~Il 145 (289)
++|+|+|+|||||||+|+.|++.+|+++++.|+++++... .|+....+.....+...+.. ...+|.
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg~~~id~D~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~~~~~~~~-----~~~vi~ 77 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKALGVGLLDTDVAIEQRTGRSIADIFATDGEQEFRRIEEDVVRAALAD-----HDGVLS 77 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHHTCCEEEHHHHHHHHHSSCHHHHHHHHCHHHHHHHHHHHHHHHHHH-----CCSEEE
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcCCCEEeCchHHHHHcCCCHHHHHHHhChHHHHHHHHHHHHHHHhc-----CCeEEe
Confidence 4689999999999999999999999999999998865431 11111111112222222211 123333
Q ss_pred cCc--ccH-HHHhhcCCCcEEEEEecCHHHHHHHHhcccccccCCCccccccccccCCCCCCCCCCCCCCCCCccccCcc
Q 022951 146 DGF--PRT-EILEGVTDIDLVINLKLREEALLAKCLGRRICSECGGNYNVACIDIKGENGNPGMYMGPLLPPPHCASKLI 222 (289)
Q Consensus 146 dg~--p~~-~~l~~~~~~d~vI~Ld~~~e~l~~Rl~~R~~~~~~g~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~ 222 (289)
+|. ... ...+.+. .+.+|||++|.+++.+|+..|...+ +.
T Consensus 78 ~g~~~v~~~~~~~~l~-~~~vV~L~~~~e~~~~Rl~~r~~r~------------------------------------~~ 120 (184)
T 2iyv_A 78 LGGGAVTSPGVRAALA-GHTVVYLEISAAEGVRRTGGNTVRP------------------------------------LL 120 (184)
T ss_dssp CCTTGGGSHHHHHHHT-TSCEEEEECCHHHHHHHTTCCCCCS------------------------------------ST
T ss_pred cCCcEEcCHHHHHHHc-CCeEEEEeCCHHHHHHHHhCCCCCC------------------------------------Cc
Confidence 442 111 2222222 5789999999999999998874211 00
Q ss_pred ccCCCcHHHHHHHHHHHHHhchHHHHHHHHcCcEEEEeCC-CCcccHHHHHHHHhccCCc
Q 022951 223 TRSDDKEEVVRERLRIYNEKSRPVEEFYRRRGKLLEFDLP-GGIPESWPKLLQALNLEDP 281 (289)
Q Consensus 223 ~r~~d~~~~~~~rl~~y~~~~~~l~~~y~~~~~l~~id~~-~~~~ev~~~i~~~l~~~~~ 281 (289)
. .++..+. ++.+.... ..+|.... .+.||++ .++++++.+|.+.+.....
T Consensus 121 ~-~~~~~~~----i~~~~~~r---~~~~~~~~-~~~Idt~~~s~ee~~~~I~~~l~~~~~ 171 (184)
T 2iyv_A 121 A-GPDRAEK----YRALMAKR---APLYRRVA-TMRVDTNRRNPGAVVRHILSRLQVPSP 171 (184)
T ss_dssp T-SCCHHHH----HHHHHHHH---HHHHHHHC-SEEEECSSSCHHHHHHHHHTTSCCCCT
T ss_pred c-CCCHHHH----HHHHHHHH---HHHHhccC-CEEEECCCCCHHHHHHHHHHHHhhcCc
Confidence 1 1222222 33332221 22443333 3678988 7999999999999976654
No 33
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=99.61 E-value=4.4e-15 Score=123.20 Aligned_cols=153 Identities=14% Similarity=0.063 Sum_probs=84.3
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHH-HhCCCeeehHHHHHHHHHc--C--CccCH---HHHHHHHHHHHHccc--ccCCceE
Q 022951 74 HVQWVFLGCPGVGKGTYASRLSN-LLGVPHIATGDLLDEIVSQ--G--KLVSD---EIIINLLSKRLEAGE--AKGEAGF 143 (289)
Q Consensus 74 ~~~Ivl~GppGsGKSTlak~La~-~lg~~~i~~d~l~~~~l~~--g--~~v~~---~~~~~ll~~~l~~~~--~~~~~g~ 143 (289)
+++|+|+|+|||||||+|+.|++ .+++.+++.|.+....... + ..... ..+...+...+.... ...+.+|
T Consensus 2 ~~~I~i~G~~GsGKST~a~~L~~~~~~~~~i~~d~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~v 81 (181)
T 1ly1_A 2 KKIILTIGCPGSGKSTWAREFIAKNPGFYNINRDDYRQSIMAHEERDEYKYTKKKEGIVTGMQFDTAKSILYGGDSVKGV 81 (181)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHSTTEEEECHHHHHHHHTTSCCGGGCCCCHHHHHHHHHHHHHHHHHHHTSCSSCCEE
T ss_pred CeEEEEecCCCCCHHHHHHHHHhhcCCcEEecHHHHHHHhhCCCccchhhhchhhhhHHHHHHHHHHHHHHhhccCCCeE
Confidence 36799999999999999999999 6899999997765443321 1 11222 112222222222211 0125689
Q ss_pred EEcCcccH----HHHhh----cCCCcEEEEEecCHHHHHHHHhcccccccCCCccccccccccCCCCCCCCCCCCCCCCC
Q 022951 144 ILDGFPRT----EILEG----VTDIDLVINLKLREEALLAKCLGRRICSECGGNYNVACIDIKGENGNPGMYMGPLLPPP 215 (289)
Q Consensus 144 Ildg~p~~----~~l~~----~~~~d~vI~Ld~~~e~l~~Rl~~R~~~~~~g~~y~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (289)
|+|+++.. +.+.. ...+..+|||++|.+++++|+..|..+
T Consensus 82 i~d~~~~~~~~~~~l~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R~~~-------------------------------- 129 (181)
T 1ly1_A 82 IISDTNLNPERRLAWETFAKEYGWKVEHKVFDVPWTELVKRNSKRGTK-------------------------------- 129 (181)
T ss_dssp EECSCCCSHHHHHHHHHHHHHHTCEEEEEECCCCHHHHHHHHTTCGGG--------------------------------
T ss_pred EEeCCCCCHHHHHHHHHHHHHcCCCEEEEEEeCCHHHHHHHHhccccC--------------------------------
Confidence 99997654 22322 222457999999999999999988521
Q ss_pred ccccCccccCCCcHHHHHHHHHHHHHhchHHHHHHHHcCcEEEEeCCCCcccHHHHHHHHhcc
Q 022951 216 HCASKLITRSDDKEEVVRERLRIYNEKSRPVEEFYRRRGKLLEFDLPGGIPESWPKLLQALNL 278 (289)
Q Consensus 216 ~~~~~L~~r~~d~~~~~~~rl~~y~~~~~~l~~~y~~~~~l~~id~~~~~~ev~~~i~~~l~~ 278 (289)
+...+.++++++.|..... .. .+.||.... +++..+|...|..
T Consensus 130 ----------~~~~~~i~~~~~~~~~~~~--------~~-~~~id~~~~-~~v~~~i~~~l~~ 172 (181)
T 1ly1_A 130 ----------AVPIDVLRSMYKSMREYLG--------LP-VYNGTPGKP-KAVIFDVDGTLAK 172 (181)
T ss_dssp ----------CCCHHHHHHHHHHHHHHHT--------CC-CC---------------------
T ss_pred ----------CCCHHHHHHHHHHhhccCC--------CC-ccccCCCCC-ceeeehhhhhhhc
Confidence 2346788888888876511 11 223777653 7788888777754
No 34
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=99.61 E-value=1.4e-14 Score=119.62 Aligned_cols=154 Identities=16% Similarity=0.103 Sum_probs=94.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhCCCeeehHHHHHHHHHcCCccCH-------HHHHHHHHHHHHcccccCCceEEEc-
Q 022951 75 VQWVFLGCPGVGKGTYASRLSNLLGVPHIATGDLLDEIVSQGKLVSD-------EIIINLLSKRLEAGEAKGEAGFILD- 146 (289)
Q Consensus 75 ~~Ivl~GppGsGKSTlak~La~~lg~~~i~~d~l~~~~l~~g~~v~~-------~~~~~ll~~~l~~~~~~~~~g~Ild- 146 (289)
++|+|+|+|||||||+|+.|++.+|+++++.|+++... .|..+.+ ..+..+....+.... ...+|++
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg~~~id~d~~~~~~--~g~~~~~~~~~~~~~~~~~~~~~~~~~l~---~~~~vi~~ 77 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARALGYEFVDTDIFMQHT--SGMTVADVVAAEGWPGFRRRESEALQAVA---TPNRVVAT 77 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHH--HCSCHHHHHHHHHHHHHHHHHHHHHHHHC---CSSEEEEC
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCcEEcccHHHHHH--hCCCHHHHHHHcCHHHHHHHHHHHHHHhh---cCCeEEEC
Confidence 57999999999999999999999999999999988553 2322211 111111112222211 1245554
Q ss_pred Cc--ccH-HHHhhcCCCcEEEEEecCHHHHHHHHh--cccccccCCCccccccccccCCCCCCCCCCCCCCCCCccccCc
Q 022951 147 GF--PRT-EILEGVTDIDLVINLKLREEALLAKCL--GRRICSECGGNYNVACIDIKGENGNPGMYMGPLLPPPHCASKL 221 (289)
Q Consensus 147 g~--p~~-~~l~~~~~~d~vI~Ld~~~e~l~~Rl~--~R~~~~~~g~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L 221 (289)
|. +.. +..+.+..++++|||++|.+++.+|+. .|..+
T Consensus 78 g~~~~~~~~~~~~l~~~~~~i~l~~~~e~~~~R~~~~~r~~~-------------------------------------- 119 (173)
T 1e6c_A 78 GGGMVLLEQNRQFMRAHGTVVYLFAPAEELALRLQASLQAHQ-------------------------------------- 119 (173)
T ss_dssp CTTGGGSHHHHHHHHHHSEEEEEECCHHHHHHHHHHHHCSCC--------------------------------------
T ss_pred CCcEEeCHHHHHHHHcCCeEEEEECCHHHHHHHHhhccCCCC--------------------------------------
Confidence 52 211 222222235899999999999999998 77211
Q ss_pred cccCCCcHHHHHHHHHHHHHhchHHHHHHHHcCcEEEEeCC-CCcccHHHHHHHHhcc
Q 022951 222 ITRSDDKEEVVRERLRIYNEKSRPVEEFYRRRGKLLEFDLP-GGIPESWPKLLQALNL 278 (289)
Q Consensus 222 ~~r~~d~~~~~~~rl~~y~~~~~~l~~~y~~~~~l~~id~~-~~~~ev~~~i~~~l~~ 278 (289)
|+....+...+++..+..... .+|.. ..+.||++ .++++++++|.+.+..
T Consensus 120 --r~~~~~~~~~~~~~~~~~~~~---~~~~~--~~~~Id~~~~~~~~~~~~i~~~l~~ 170 (173)
T 1e6c_A 120 --RPTLTGRPIAEEMEAVLRERE---ALYQD--VAHYVVDATQPPAAIVCELMQTMRL 170 (173)
T ss_dssp --CCCTTHHHHHHHHHHHHHHHH---HHHHH--HCSEEEETTSCHHHHHHHHHHHTTC
T ss_pred --CCcCCCCCHHHHHHHHHHHHH---HHHHh--CcEEEECCCCCHHHHHHHHHHHhcc
Confidence 111112334455555544333 23443 23578888 7999999999998864
No 35
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=99.60 E-value=8e-15 Score=120.72 Aligned_cols=103 Identities=17% Similarity=0.245 Sum_probs=67.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhCCCeeehHHHHHHHHHcCCcc-------CHHHHHHHHHHHHHcccccCCceEEEc-
Q 022951 75 VQWVFLGCPGVGKGTYASRLSNLLGVPHIATGDLLDEIVSQGKLV-------SDEIIINLLSKRLEAGEAKGEAGFILD- 146 (289)
Q Consensus 75 ~~Ivl~GppGsGKSTlak~La~~lg~~~i~~d~l~~~~l~~g~~v-------~~~~~~~ll~~~l~~~~~~~~~g~Ild- 146 (289)
|+|+|+|+|||||||+++.|++++|+++++.|++..... |..+ ....+..+....+..... ...+|++
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~~l~~~~i~~d~~~~~~~--g~~~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~Vi~~ 76 (168)
T 2pt5_A 1 MRIYLIGFMCSGKSTVGSLLSRSLNIPFYDVDEEVQKRE--GLSIPQIFEKKGEAYFRKLEFEVLKDLSE--KENVVIST 76 (168)
T ss_dssp CEEEEESCTTSCHHHHHHHHHHHHTCCEEEHHHHHHHHH--TSCHHHHHHHSCHHHHHHHHHHHHHHHTT--SSSEEEEC
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCCCEEECcHHHHHHc--CCCHHHHHHHhChHHHHHHHHHHHHHHhc--cCCeEEEC
Confidence 579999999999999999999999999999999885542 2211 111221111122221111 2345554
Q ss_pred Cc--cc-HHHHhhcCCCcEEEEEecCHHHHHHHHhccc
Q 022951 147 GF--PR-TEILEGVTDIDLVINLKLREEALLAKCLGRR 181 (289)
Q Consensus 147 g~--p~-~~~l~~~~~~d~vI~Ld~~~e~l~~Rl~~R~ 181 (289)
|. +. .+.++.+..++++|||++|.+++++|+..|.
T Consensus 77 g~~~~~~~~~~~~l~~~~~~i~l~~~~e~~~~R~~~r~ 114 (168)
T 2pt5_A 77 GGGLGANEEALNFMKSRGTTVFIDIPFEVFLERCKDSK 114 (168)
T ss_dssp CHHHHTCHHHHHHHHTTSEEEEEECCHHHHHHHCBCTT
T ss_pred CCCEeCCHHHHHHHHcCCEEEEEECCHHHHHHHHhCCC
Confidence 42 11 1233333347899999999999999998774
No 36
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=99.60 E-value=1e-14 Score=120.07 Aligned_cols=146 Identities=18% Similarity=0.151 Sum_probs=94.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhCCCeeehHHHHHHHHHcCCccCHHHHHHHHHHHHHcccccCCceEEEcCcccH---
Q 022951 75 VQWVFLGCPGVGKGTYASRLSNLLGVPHIATGDLLDEIVSQGKLVSDEIIINLLSKRLEAGEAKGEAGFILDGFPRT--- 151 (289)
Q Consensus 75 ~~Ivl~GppGsGKSTlak~La~~lg~~~i~~d~l~~~~l~~g~~v~~~~~~~ll~~~l~~~~~~~~~g~Ildg~p~~--- 151 (289)
++|+|+|+|||||||+++.|++.+++.+++.|.+..... ....+... ...+.. +..+|+|.+...
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~~l~~~~i~~d~~~~~~~------~~~~~~~~-~~~l~~-----~~~vi~dr~~~~~~v 69 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSKELKYPIIKGSSFELAKS------GNEKLFEH-FNKLAD-----EDNVIIDRFVYSNLV 69 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHHHHCCCEEECCCHHHHTT------CHHHHHHH-HHHHTT-----CCSEEEESCHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCeeecCcccccchh------HHHHHHHH-HHHHHh-----CCCeEEeeeecchHH
Confidence 579999999999999999999999999999987763321 01111111 111211 346677742211
Q ss_pred ----------------HHHhh-cCCCcEEEEEecCHHHHHHHHhcccccccCCCccccccccccCCCCCCCCCCCCCCCC
Q 022951 152 ----------------EILEG-VTDIDLVINLKLREEALLAKCLGRRICSECGGNYNVACIDIKGENGNPGMYMGPLLPP 214 (289)
Q Consensus 152 ----------------~~l~~-~~~~d~vI~Ld~~~e~l~~Rl~~R~~~~~~g~~y~~~~~~~~~~~~~~~~~~~~~~~~ 214 (289)
+.+.. +..++.+|||++|++++.+|+.+|..+
T Consensus 70 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~l~~~~e~~~~R~~~r~r~------------------------------- 118 (173)
T 3kb2_A 70 YAKKFKDYSILTERQLRFIEDKIKAKAKVVYLHADPSVIKKRLRVRGDE------------------------------- 118 (173)
T ss_dssp HTTTBTTCCCCCHHHHHHHHHHHTTTEEEEEEECCHHHHHHHHHHHSCS-------------------------------
T ss_pred HHHHHHHhhHhhHHHHHHHhccCCCCCEEEEEeCCHHHHHHHHHhcCCc-------------------------------
Confidence 11111 235899999999999999999887321
Q ss_pred CccccCccccCCCcHHHHHHHHHHHHHhchHHHHHHHHcCcEEEEeCCC-CcccHHHHHHHHhccCC
Q 022951 215 PHCASKLITRSDDKEEVVRERLRIYNEKSRPVEEFYRRRGKLLEFDLPG-GIPESWPKLLQALNLED 280 (289)
Q Consensus 215 ~~~~~~L~~r~~d~~~~~~~rl~~y~~~~~~l~~~y~~~~~l~~id~~~-~~~ev~~~i~~~l~~~~ 280 (289)
....+.+++..+.|.+ +...|. ..++.||+++ ++++++++|.+.++...
T Consensus 119 -----------~~~~~~~~~~~~~~~~----~~~~~~--~~~~~id~~~~~~~ev~~~I~~~~~~~~ 168 (173)
T 3kb2_A 119 -----------YIEGKDIDSILELYRE----VMSNAG--LHTYSWDTGQWSSDEIAKDIIFLVELEH 168 (173)
T ss_dssp -----------CCCHHHHHHHHHHHHH----HHHTCS--SCEEEEETTTSCHHHHHHHHHHHHHHGG
T ss_pred -----------chhhhHHHHHHHHHHH----HHhhcC--CCEEEEECCCCCHHHHHHHHHHHHhCCC
Confidence 1112333333333333 233332 3578899984 99999999999998754
No 37
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=99.59 E-value=7.2e-15 Score=125.37 Aligned_cols=156 Identities=15% Similarity=0.144 Sum_probs=99.8
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhCCCeeeh------------HHHHHHHHHcCCccCHHHHHHHHHH-------HHH
Q 022951 73 KHVQWVFLGCPGVGKGTYASRLSNLLGVPHIAT------------GDLLDEIVSQGKLVSDEIIINLLSK-------RLE 133 (289)
Q Consensus 73 ~~~~Ivl~GppGsGKSTlak~La~~lg~~~i~~------------d~l~~~~l~~g~~v~~~~~~~ll~~-------~l~ 133 (289)
++++|+|+|+|||||||+++.|++.++..++++ ++.++.++..+..++......+... .+.
T Consensus 9 ~~~~I~l~G~~GsGKST~~~~L~~~l~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 88 (212)
T 2wwf_A 9 KGKFIVFEGLDRSGKSTQSKLLVEYLKNNNVEVKHLYFPNRETGIGQIISKYLKMENSMSNETIHLLFSANRWEHMNEIK 88 (212)
T ss_dssp CSCEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCTTSHHHHHHHHHHTTSSCCCHHHHHHHHHHHHHTTHHHHH
T ss_pred cCCEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEecCCCCCcHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 467899999999999999999999987665543 2234455655555665433222211 111
Q ss_pred cccccCCceEEEcCcccH-------------HHH----hhcCCCcEEEEEecCHHHHHHHHhcccccccCCCcccccccc
Q 022951 134 AGEAKGEAGFILDGFPRT-------------EIL----EGVTDIDLVINLKLREEALLAKCLGRRICSECGGNYNVACID 196 (289)
Q Consensus 134 ~~~~~~~~g~Ildg~p~~-------------~~l----~~~~~~d~vI~Ld~~~e~l~~Rl~~R~~~~~~g~~y~~~~~~ 196 (289)
..... +..+|+|+++.. +.+ ..+..+|++|||++|++++.+|+.+|. +
T Consensus 89 ~~l~~-~~~vi~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~d~vi~l~~~~e~~~~Rl~~r~-~------------- 153 (212)
T 2wwf_A 89 SLLLK-GIWVVCDRYAYSGVAYSSGALNLNKTWCMNPDQGLIKPDVVFYLNVPPNYAQNRSDYGE-E------------- 153 (212)
T ss_dssp HHHHH-TCEEEEECCHHHHHHHHHHHSCCCHHHHHGGGTTSBCCSEEEEEECCTTGGGGSTTTTS-S-------------
T ss_pred HHHhC-CCEEEEecchhhHHHHHHhccCCCHHHHHHHhhCCCCCCEEEEEeCCHHHHHHhhccCc-c-------------
Confidence 11111 457999997753 111 112358999999999999999886541 0
Q ss_pred ccCCCCCCCCCCCCCCCCCccccCccccCCCcHHHHHHHHHHHHHhchHHHHHHHHcCcEEEEeCCCCcccHHHHHHHHh
Q 022951 197 IKGENGNPGMYMGPLLPPPHCASKLITRSDDKEEVVRERLRIYNEKSRPVEEFYRRRGKLLEFDLPGGIPESWPKLLQAL 276 (289)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~L~~r~~d~~~~~~~rl~~y~~~~~~l~~~y~~~~~l~~id~~~~~~ev~~~i~~~l 276 (289)
|.++ +.+.+++......... ...++.||+++++++++.+|.+.+
T Consensus 154 ---------------------------r~~~--~~~~~~~~~~~~~~~~-------~~~~~~Id~~~~~~~~~~~i~~~l 197 (212)
T 2wwf_A 154 ---------------------------IYEK--VETQKKIYETYKHFAH-------EDYWINIDATRKIEDIHNDIVKEV 197 (212)
T ss_dssp ---------------------------TTCS--HHHHHHHHHHGGGGTT-------CTTEEEEECSSCHHHHHHHHHHHH
T ss_pred ---------------------------cccH--HHHHHHHHHHHHHHhc-------cCCEEEEECCCCHHHHHHHHHHHH
Confidence 1121 3455566433322211 345889999999999999999999
Q ss_pred ccC
Q 022951 277 NLE 279 (289)
Q Consensus 277 ~~~ 279 (289)
..-
T Consensus 198 ~~~ 200 (212)
T 2wwf_A 198 TKI 200 (212)
T ss_dssp TTS
T ss_pred HHh
Confidence 754
No 38
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=99.59 E-value=1.1e-13 Score=119.72 Aligned_cols=161 Identities=19% Similarity=0.161 Sum_probs=100.6
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhC---CCeee--------hHHHHHHHHHcCC--ccCHHHHHHH--------HHHH
Q 022951 73 KHVQWVFLGCPGVGKGTYASRLSNLLG---VPHIA--------TGDLLDEIVSQGK--LVSDEIIINL--------LSKR 131 (289)
Q Consensus 73 ~~~~Ivl~GppGsGKSTlak~La~~lg---~~~i~--------~d~l~~~~l~~g~--~v~~~~~~~l--------l~~~ 131 (289)
+.++|+|.|++||||||+++.|++.++ +.++. .++.+++++..+. .+......-+ +.+.
T Consensus 5 ~g~~i~~eG~~gsGKsT~~~~l~~~l~~~~~~v~~~~~p~~~~~g~~i~~~l~~~~~~~~~~~~~~llf~a~R~~~~~~~ 84 (213)
T 4edh_A 5 TGLFVTLEGPEGAGKSTNRDYLAERLRERGIEVQLTREPGGTPLAERIRELLLAPSDEPMAADTELLLMFAARAQHLAGV 84 (213)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEESSCSSHHHHHHHHHHHSCCSSCCCHHHHHHHHHHHHHHHHHHT
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 468999999999999999999999884 44443 2556777777664 2333221101 1111
Q ss_pred HHcccccCCceEEEcCcccH-------------H---HHh----hcCCCcEEEEEecCHHHHHHHHhcccccccCCCccc
Q 022951 132 LEAGEAKGEAGFILDGFPRT-------------E---ILE----GVTDIDLVINLKLREEALLAKCLGRRICSECGGNYN 191 (289)
Q Consensus 132 l~~~~~~~~~g~Ildg~p~~-------------~---~l~----~~~~~d~vI~Ld~~~e~l~~Rl~~R~~~~~~g~~y~ 191 (289)
+...... +..+|+|.|..+ + .+. ....||++||||+|++++++|+.+|...
T Consensus 85 i~p~l~~-g~~Vi~DRy~~S~~ayq~~~~g~~~~~~~~l~~~~~~~~~PDlvi~Ld~~~e~~~~Ri~~R~~~-------- 155 (213)
T 4edh_A 85 IRPALAR-GAVVLCDRFTDATYAYQGGGRGLPEARIAALESFVQGDLRPDLTLVFDLPVEIGLARAAARGRL-------- 155 (213)
T ss_dssp HHHHHHT-TCEEEEESCHHHHHHHTTTTTCCCHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHHHCCCSSC--------
T ss_pred HHHHHHC-CCEEEECccHhHHHHHhhhccCCCHHHHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHHhcCCc--------
Confidence 1111111 457888875444 1 111 1246999999999999999999988410
Q ss_pred cccccccCCCCCCCCCCCCCCCCCccccCccccCCC-cHHHHHHHHHHHHHhchHHHHHHHHcCcEEEEeCCCCcccHHH
Q 022951 192 VACIDIKGENGNPGMYMGPLLPPPHCASKLITRSDD-KEEVVRERLRIYNEKSRPVEEFYRRRGKLLEFDLPGGIPESWP 270 (289)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~r~~d-~~~~~~~rl~~y~~~~~~l~~~y~~~~~l~~id~~~~~~ev~~ 270 (289)
.|.+. ..+.+++..+.|... .+.| ...++.||++++++++..
T Consensus 156 -------------------------------dr~E~~~~~~~~rv~~~y~~l----~~~~--~~~~~vIDa~~s~eeV~~ 198 (213)
T 4edh_A 156 -------------------------------DRFEQEDRRFFEAVRQTYLQR----AAQA--PERYQVLDAGLPLAEVQA 198 (213)
T ss_dssp -------------------------------CTTTTSCHHHHHHHHHHHHHH----HHHC--TTTEEEEETTSCHHHHHH
T ss_pred -------------------------------CcccccHHHHHHHHHHHHHHH----HHHC--CCcEEEEeCCCCHHHHHH
Confidence 01121 223333333344432 2222 346999999999999999
Q ss_pred HHHHHhccC
Q 022951 271 KLLQALNLE 279 (289)
Q Consensus 271 ~i~~~l~~~ 279 (289)
+|.++|...
T Consensus 199 ~I~~~l~~~ 207 (213)
T 4edh_A 199 GLDRLLPNL 207 (213)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999988653
No 39
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=99.58 E-value=4.9e-14 Score=119.83 Aligned_cols=168 Identities=13% Similarity=0.140 Sum_probs=98.1
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHHHhCCC--eee----hHHHHHHHHHcCCc--cCHHHHHHHH---------HHHHHccc
Q 022951 74 HVQWVFLGCPGVGKGTYASRLSNLLGVP--HIA----TGDLLDEIVSQGKL--VSDEIIINLL---------SKRLEAGE 136 (289)
Q Consensus 74 ~~~Ivl~GppGsGKSTlak~La~~lg~~--~i~----~d~l~~~~l~~g~~--v~~~~~~~ll---------~~~l~~~~ 136 (289)
+++|+|+|+|||||||+++.|++.++.. ++. .++.+++++..+.. ..+.....++ ...+....
T Consensus 4 ~~~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~i~~~l 83 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQATLLKDWIELKRDVYLTEWNSSDWIHDIIKEAKKKDLLTPLTFSLIHATDFSDRYERYILPML 83 (213)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHTTTSCEEEEETTCCCHHHHHHHHHTTTSCCCHHHHHHHHHHHHHHHHHHTHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHhhcCCEEEecCCcHHHHHHHHhccccccCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5789999999999999999999999864 443 34455555544321 1222111111 01111111
Q ss_pred ccCCceEEEcCcccHH------------HHhh----cCCCcEEEEEecCHHHHHHHHh-cccccccCCCccccccccccC
Q 022951 137 AKGEAGFILDGFPRTE------------ILEG----VTDIDLVINLKLREEALLAKCL-GRRICSECGGNYNVACIDIKG 199 (289)
Q Consensus 137 ~~~~~g~Ildg~p~~~------------~l~~----~~~~d~vI~Ld~~~e~l~~Rl~-~R~~~~~~g~~y~~~~~~~~~ 199 (289)
..+..+|+|+|+.+. .+.. +..+|++|||++|++++.+|+. +|... +. |.
T Consensus 84 -~~g~~vi~D~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~vi~l~~~~e~~~~Rl~~~R~~~---~~-~~-------- 150 (213)
T 2plr_A 84 -KSGFIVISDRYIYTAYARDSVRGVDIDWVKKLYSFAIKPDITFYIRVSPDIALERIKKSKRKI---KP-QE-------- 150 (213)
T ss_dssp -HTTCEEEEESCHHHHHHHHHTTTCCHHHHHHHTTTSCCCSEEEEEECCHHHHHHHHHHTTCCC---CT-TT--------
T ss_pred -hCCCEEEEeCcHhHHHHHHHhhCCCHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHhcccccc---cc-cc--------
Confidence 114579999987651 1222 2348999999999999999998 77410 11 10
Q ss_pred CCCCCCCCCCCCCCCCccccCccccCC--CcHHHHHHHHHHHHHhchHHHHHHHHcCcEEEEeCCCCcccHHHHHHHHhc
Q 022951 200 ENGNPGMYMGPLLPPPHCASKLITRSD--DKEEVVRERLRIYNEKSRPVEEFYRRRGKLLEFDLPGGIPESWPKLLQALN 277 (289)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~L~~r~~--d~~~~~~~rl~~y~~~~~~l~~~y~~~~~l~~id~~~~~~ev~~~i~~~l~ 277 (289)
++..+..+.+ +..+.+.+|+..++..+. + ...++.||+++++++++++|.+.|.
T Consensus 151 -----------------~g~~~~~~~d~~e~~~~~~~r~~~~~~~~~---~----~~~~~~Id~~~~~e~v~~~I~~~l~ 206 (213)
T 2plr_A 151 -----------------AGADIFPGLSPEEGFLKYQGLITEVYDKLV---K----DENFIVIDGTKTPKEIQIQIRKFVG 206 (213)
T ss_dssp -----------------TTTTTCTTSCHHHHHHHHHHHHHHHHHHHT---T----TTTCEEEETTSCHHHHHHHHHHHHH
T ss_pred -----------------cccccccccchhhhHHHHHHHHHHHHHHHH---h----hCCEEEEECCCCHHHHHHHHHHHHH
Confidence 0001111111 111345555544433221 1 1157899999999999999999885
Q ss_pred c
Q 022951 278 L 278 (289)
Q Consensus 278 ~ 278 (289)
.
T Consensus 207 ~ 207 (213)
T 2plr_A 207 E 207 (213)
T ss_dssp H
T ss_pred H
Confidence 3
No 40
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=99.58 E-value=3.7e-14 Score=120.72 Aligned_cols=156 Identities=15% Similarity=0.144 Sum_probs=99.9
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhCCCeeehHHHHH----HHHHcCCccCHHHHH---HHHHHHHHcccccCCceEEE
Q 022951 73 KHVQWVFLGCPGVGKGTYASRLSNLLGVPHIATGDLLD----EIVSQGKLVSDEIII---NLLSKRLEAGEAKGEAGFIL 145 (289)
Q Consensus 73 ~~~~Ivl~GppGsGKSTlak~La~~lg~~~i~~d~l~~----~~l~~g~~v~~~~~~---~ll~~~l~~~~~~~~~g~Il 145 (289)
++.+|+|+|++||||||+++.|+..+|..+++.+++.. .....|....+.... ..++..+...... +..+|+
T Consensus 28 ~g~~i~l~G~~GsGKSTl~~~L~~~~g~~~i~~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~-g~~vii 106 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTIAHGVADETGLEFAEADAFHSPENIATMQRGIPLTDEDRWPWLRSLAEWMDARADA-GVSTII 106 (200)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHHCCEEEEGGGGSCHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHT-TCCEEE
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhhCCeEEcccccccHHHHHHHhcCCCCCCcccccHHHHHHHHHHHHHhc-CCCEEE
Confidence 45789999999999999999999999999999887641 112334444433221 1222222211111 346777
Q ss_pred cC-cccH---HHHhhcCCCcEEEEEecCHHHHHHHHhcccccccCCCccccccccccCCCCCCCCCCCCCCCCCccccCc
Q 022951 146 DG-FPRT---EILEGVTDIDLVINLKLREEALLAKCLGRRICSECGGNYNVACIDIKGENGNPGMYMGPLLPPPHCASKL 221 (289)
Q Consensus 146 dg-~p~~---~~l~~~~~~d~vI~Ld~~~e~l~~Rl~~R~~~~~~g~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L 221 (289)
|. +... +.+..+.....+|||++|.+++.+|+.+|..+.
T Consensus 107 d~~~~~~~~~~~l~~~~~~~~vv~l~~~~e~l~~Rl~~R~~~~------------------------------------- 149 (200)
T 4eun_A 107 TCSALKRTYRDVLREGPPSVDFLHLDGPAEVIKGRMSKREGHF------------------------------------- 149 (200)
T ss_dssp EECCCCHHHHHHHTTSSSCCEEEEEECCHHHHHHHHTTCSCCS-------------------------------------
T ss_pred EchhhhHHHHHHHHHhCCceEEEEEeCCHHHHHHHHHhcccCC-------------------------------------
Confidence 75 4433 344444445689999999999999998885321
Q ss_pred cccCCCcHHHHHHHHHHHHHhchHHHHHHHHcCcEEEEeCCCCcccHHHHHHHHhccC
Q 022951 222 ITRSDDKEEVVRERLRIYNEKSRPVEEFYRRRGKLLEFDLPGGIPESWPKLLQALNLE 279 (289)
Q Consensus 222 ~~r~~d~~~~~~~rl~~y~~~~~~l~~~y~~~~~l~~id~~~~~~ev~~~i~~~l~~~ 279 (289)
. ..+.++..++.+. .+|.+ ...+.||+++++++++++|.+.|...
T Consensus 150 ----~-~~~~l~~~~~~~~-------~~~~~-~~~~~Id~~~~~~e~~~~I~~~l~~~ 194 (200)
T 4eun_A 150 ----M-PASLLQSQLATLE-------ALEPD-ESGIVLDLRQPPEQLIERALTWLDIA 194 (200)
T ss_dssp ----S-CGGGHHHHHHHCC-------CCCTT-SCEEEEETTSCHHHHHHHHHHHHCCC
T ss_pred ----C-CHHHHHHHHHHhC-------CCCCC-CCeEEEECCCCHHHHHHHHHHHHHhc
Confidence 1 1223333332221 12222 24688999999999999999999764
No 41
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=99.57 E-value=2.1e-14 Score=120.56 Aligned_cols=108 Identities=16% Similarity=0.148 Sum_probs=71.8
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhCCCeeehHHHHHHHHHcCCccCHHHHH-------HHHHHHHHcccccCCceEEE
Q 022951 73 KHVQWVFLGCPGVGKGTYASRLSNLLGVPHIATGDLLDEIVSQGKLVSDEIII-------NLLSKRLEAGEAKGEAGFIL 145 (289)
Q Consensus 73 ~~~~Ivl~GppGsGKSTlak~La~~lg~~~i~~d~l~~~~l~~g~~v~~~~~~-------~ll~~~l~~~~~~~~~g~Il 145 (289)
.+++|+|+|+|||||||+++.|++.+|+.+++.|.+.+.+...-.....++.. ..+...+...... +.++|+
T Consensus 4 ~~~~I~l~G~~GsGKST~~~~L~~~l~~~~i~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-g~~vi~ 82 (193)
T 2rhm_A 4 TPALIIVTGHPATGKTTLSQALATGLRLPLLSKDAFKEVMFDGLGWSDREWSRRVGATAIMMLYHTAATILQS-GQSLIM 82 (193)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHHTCCEEEHHHHHHHHHHHHCCCSHHHHHHHHHHHHHHHHHHHHHHHHT-TCCEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHcCCeEecHHHHHHHHHHhcCccchHHHHHhhHHHHHHHHHHHHHHHhC-CCeEEE
Confidence 46789999999999999999999999999999988875443321111111111 1111111111111 458999
Q ss_pred cCcccH----HHH---h-hcCCCcEEEEEecCHHHHHHHHhccc
Q 022951 146 DGFPRT----EIL---E-GVTDIDLVINLKLREEALLAKCLGRR 181 (289)
Q Consensus 146 dg~p~~----~~l---~-~~~~~d~vI~Ld~~~e~l~~Rl~~R~ 181 (289)
|++... ..+ . ....++++|||++|++++.+|+.+|.
T Consensus 83 d~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~~~e~~~~R~~~R~ 126 (193)
T 2rhm_A 83 ESNFRVDLDTERMQNLHTIAPFTPIQIRCVASGDVLVERILSRI 126 (193)
T ss_dssp EECCCHHHHHHHHHHHHHHSCCEEEEEEEECCHHHHHHHHHHHH
T ss_pred ecCCCCHHHHHHHHHHHHhcCCeEEEEEEeCCHHHHHHHHHHhc
Confidence 997643 122 2 12347799999999999999998875
No 42
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=99.57 E-value=1.9e-14 Score=125.73 Aligned_cols=159 Identities=19% Similarity=0.218 Sum_probs=96.7
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHHh-------CCCeee--------hHHHHHHHHHcCCccCHHHHHHHHHHH------
Q 022951 73 KHVQWVFLGCPGVGKGTYASRLSNLL-------GVPHIA--------TGDLLDEIVSQGKLVSDEIIINLLSKR------ 131 (289)
Q Consensus 73 ~~~~Ivl~GppGsGKSTlak~La~~l-------g~~~i~--------~d~l~~~~l~~g~~v~~~~~~~ll~~~------ 131 (289)
+.++|+|.|++||||||+++.|++.+ |+.++. .++.+++++.++...+.....-....+
T Consensus 24 ~g~~I~~eG~~GsGKsT~~~~l~~~l~~~~~~~g~~v~~~rep~~t~~g~~ir~~l~~~~~~~~~~~llf~a~R~~~~~~ 103 (227)
T 3v9p_A 24 RGKFITFEGIDGAGKTTHLQWFCDRLQERLGPAGRHVVVTREPGGTRLGETLREILLNQPMDLETEALLMFAGRREHLAL 103 (227)
T ss_dssp CCCEEEEECCC---CHHHHHHHHHHHHHHHGGGTCCEEEEESSSSSHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhhccccceeeeeecCCCCChHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHH
Confidence 46799999999999999999999988 544432 255567777776533332211111111
Q ss_pred -HHcccccCCceEEEcCcccH-------------HHH---h----hcCCCcEEEEEecCHHHHHHHHhcccccccCCCcc
Q 022951 132 -LEAGEAKGEAGFILDGFPRT-------------EIL---E----GVTDIDLVINLKLREEALLAKCLGRRICSECGGNY 190 (289)
Q Consensus 132 -l~~~~~~~~~g~Ildg~p~~-------------~~l---~----~~~~~d~vI~Ld~~~e~l~~Rl~~R~~~~~~g~~y 190 (289)
+...... +..||+|.|..+ +.+ . ....||++||||+|++++++|+.+|...
T Consensus 104 ~i~p~l~~-g~~VI~DRy~~S~~ayq~~~~gl~~~~~~~l~~~~~~~~~PDl~I~Ldv~~e~~~~Ri~~R~~~------- 175 (227)
T 3v9p_A 104 VIEPALAR-GDWVVSDRFTDATFAYQGGGRGLPRDKLEALERWVQGGFQPDLTVLFDVPPQIASARRGAVRMP------- 175 (227)
T ss_dssp THHHHHHT-TCEEEEECCHHHHHHHHTTTTCCCHHHHHHHHHHHHTTCCCSEEEEEECCSSCGGGTTTCCCCC-------
T ss_pred HHHHHHHc-CCEEEEeccHhHHHHHhhhccCCCHHHHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHHhccCc-------
Confidence 1111111 457889986555 111 1 1246999999999999999999888410
Q ss_pred ccccccccCCCCCCCCCCCCCCCCCccccCccccCCCcHHHHHHHH-HHHHHhchHHHHHHHHcCcEEEEeCCCCcccHH
Q 022951 191 NVACIDIKGENGNPGMYMGPLLPPPHCASKLITRSDDKEEVVRERL-RIYNEKSRPVEEFYRRRGKLLEFDLPGGIPESW 269 (289)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~r~~d~~~~~~~rl-~~y~~~~~~l~~~y~~~~~l~~id~~~~~~ev~ 269 (289)
.|.+.....+.+++ +.|... .+.| .+.++.||++++++++.
T Consensus 176 --------------------------------dr~E~~~~ef~~rv~~~Y~~l----a~~~--~~~~~vIDa~~s~eeV~ 217 (227)
T 3v9p_A 176 --------------------------------DKFESESDAFFARTRAEYLRR----AQEA--PHRFVIVDSSEPIAQIR 217 (227)
T ss_dssp -----------------------------------CCHHHHHHHHHHHHHHHH----HHHC--TTTEEEEETTSCHHHHH
T ss_pred --------------------------------cchhhhhHHHHHHHHHHHHHH----HHHh--cCCEEEEeCCCCHHHHH
Confidence 11222223344444 334332 2222 35699999999999999
Q ss_pred HHHHHHhc
Q 022951 270 PKLLQALN 277 (289)
Q Consensus 270 ~~i~~~l~ 277 (289)
++|.+.|+
T Consensus 218 ~~I~~~l~ 225 (227)
T 3v9p_A 218 KQLEGVLA 225 (227)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99999875
No 43
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=99.56 E-value=7.2e-14 Score=117.47 Aligned_cols=103 Identities=17% Similarity=0.376 Sum_probs=70.2
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHHH-hCCCeeehHHHHHHH--H----Hc-CC-cc---CHHHHHHHHHHHHHcccccC
Q 022951 72 GKHVQWVFLGCPGVGKGTYASRLSNL-LGVPHIATGDLLDEI--V----SQ-GK-LV---SDEIIINLLSKRLEAGEAKG 139 (289)
Q Consensus 72 ~~~~~Ivl~GppGsGKSTlak~La~~-lg~~~i~~d~l~~~~--l----~~-g~-~v---~~~~~~~ll~~~l~~~~~~~ 139 (289)
.++++|+|+|+|||||||+++.|++. +|++++++|+++++. . .. +. .+ .++.+...+...+..
T Consensus 8 ~~~~~I~l~G~~GsGKSTv~~~La~~l~g~~~id~d~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~l~~~~~~----- 82 (184)
T 1y63_A 8 PKGINILITGTPGTGKTSMAEMIAAELDGFQHLEVGKLVKENHFYTEYDTELDTHIIEEKDEDRLLDFMEPIMVS----- 82 (184)
T ss_dssp CSSCEEEEECSTTSSHHHHHHHHHHHSTTEEEEEHHHHHHHTTCSCC------CCCCCHHHHHHHHHHHHHHHTS-----
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHhcCCCEEeeHHHHHHHhhhhhhHHHHhhhcccCCCCHHHHHHHHHHHHhc-----
Confidence 35678999999999999999999999 799999999998542 0 00 11 11 222333333333321
Q ss_pred CceEEEcCcccHHHHhhcCCCcEEEEEecCHHHHHHHHhccc
Q 022951 140 EAGFILDGFPRTEILEGVTDIDLVINLKLREEALLAKCLGRR 181 (289)
Q Consensus 140 ~~g~Ildg~p~~~~l~~~~~~d~vI~Ld~~~e~l~~Rl~~R~ 181 (289)
..++|+|+.... .++. ..++.+|||++|.+++.+|+.+|.
T Consensus 83 ~g~~vi~~~~~~-~~~~-~~~~~vi~l~~~~e~~~~Rl~~R~ 122 (184)
T 1y63_A 83 RGNHVVDYHSSE-LFPE-RWFHMVVVLHTSTEVLFERLTKRQ 122 (184)
T ss_dssp SSEEEEECSCCT-TSCG-GGCSEEEEEECCHHHHHHHHHHTT
T ss_pred cCCEEEeCchHh-hhhh-ccCCEEEEEECCHHHHHHHHHhCC
Confidence 247888864322 1211 126899999999999999999884
No 44
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=99.56 E-value=1.3e-13 Score=114.46 Aligned_cols=155 Identities=15% Similarity=0.158 Sum_probs=97.5
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhCCCeeehHHHHHH----HHHcCCccCHHHH---HHHHHHHHHcccccCCceEEE
Q 022951 73 KHVQWVFLGCPGVGKGTYASRLSNLLGVPHIATGDLLDE----IVSQGKLVSDEII---INLLSKRLEAGEAKGEAGFIL 145 (289)
Q Consensus 73 ~~~~Ivl~GppGsGKSTlak~La~~lg~~~i~~d~l~~~----~l~~g~~v~~~~~---~~ll~~~l~~~~~~~~~g~Il 145 (289)
++.+|+|+|++||||||+++.|++.+|..+++.|++... ....|..+.+... ...++..+...... +..+|+
T Consensus 7 ~g~~i~l~G~~GsGKSTl~~~l~~~~g~~~i~~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~vi 85 (175)
T 1knq_A 7 DHHIYVLMGVSGSGKSAVASEVAHQLHAAFLDGDFLHPRRNIEKMASGEPLNDDDRKPWLQALNDAAFAMQRT-NKVSLI 85 (175)
T ss_dssp TSEEEEEECSTTSCHHHHHHHHHHHHTCEEEEGGGGCCHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHH-CSEEEE
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHhhCcEEEeCccccchHHHHHhhcCcCCCccccccHHHHHHHHHHHHHhc-CCcEEE
Confidence 357899999999999999999999999999999887421 1123444443211 12222222221111 347888
Q ss_pred c-CcccH---HHHhhcCCCc-EEEEEecCHHHHHHHHhcccccccCCCccccccccccCCCCCCCCCCCCCCCCCccccC
Q 022951 146 D-GFPRT---EILEGVTDID-LVINLKLREEALLAKCLGRRICSECGGNYNVACIDIKGENGNPGMYMGPLLPPPHCASK 220 (289)
Q Consensus 146 d-g~p~~---~~l~~~~~~d-~vI~Ld~~~e~l~~Rl~~R~~~~~~g~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (289)
| +++.. +.+.... ++ .+|||++|.+++.+|+..|..+.
T Consensus 86 ~~~~~~~~~~~~l~~~~-~~~~vv~l~~~~e~~~~R~~~R~~~~------------------------------------ 128 (175)
T 1knq_A 86 VCSALKKHYRDLLREGN-PNLSFIYLKGDFDVIESRLKARKGHF------------------------------------ 128 (175)
T ss_dssp ECCCCSHHHHHHHHTTC-TTEEEEEEECCHHHHHHHHHTSTTCC------------------------------------
T ss_pred EeCchHHHHHHHHHhcC-CCEEEEEEECCHHHHHHHHHhccCCC------------------------------------
Confidence 8 45444 3343332 35 79999999999999999884210
Q ss_pred ccccCCCcHHHHHHHHHHHHHhchHHHHHHHHcCcEEEEeCCCCcccHHHHHHHHhcc
Q 022951 221 LITRSDDKEEVVRERLRIYNEKSRPVEEFYRRRGKLLEFDLPGGIPESWPKLLQALNL 278 (289)
Q Consensus 221 L~~r~~d~~~~~~~rl~~y~~~~~~l~~~y~~~~~l~~id~~~~~~ev~~~i~~~l~~ 278 (289)
...+.+..++..|.. + +|.+ ...+.||++++++++..+|.+.|..
T Consensus 129 ------~~~~~~~~~~~~~~~----~--~~~~-~~~~~Id~~~~~~~~~~~i~~~l~~ 173 (175)
T 1knq_A 129 ------FKTQMLVTQFETLQE----P--GADE-TDVLVVDIDQPLEGVVASTIEVIKK 173 (175)
T ss_dssp ------CCHHHHHHHHHHCCC----C--CTTC-TTEEEEECSSCHHHHHHHHHHHHHC
T ss_pred ------CchHHHHHHHHhhhC----c--ccCC-CCeEEEeCCCCHHHHHHHHHHHHhc
Confidence 113344433332211 1 1322 2468899999999999999998854
No 45
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=99.55 E-value=9.2e-15 Score=126.14 Aligned_cols=164 Identities=19% Similarity=0.130 Sum_probs=93.4
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHHHhCCCeeehHHHHHHHH----HcCCccCH----------------------------
Q 022951 74 HVQWVFLGCPGVGKGTYASRLSNLLGVPHIATGDLLDEIV----SQGKLVSD---------------------------- 121 (289)
Q Consensus 74 ~~~Ivl~GppGsGKSTlak~La~~lg~~~i~~d~l~~~~l----~~g~~v~~---------------------------- 121 (289)
+++|.|+|++||||||+++.|++.+|+++++.|+++.... ..|..+.+
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d~g~i~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 84 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEALQWHLLDSGAIYRVLALAALHHHVDVASEDALVPLASHLDVRFVSTNGNLEVILEG 84 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHHHHHHTCCTTCHHHHHHHHHTCCEEEEEETTEEEEEETT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCcccCcceeehhhHHHHHcCCCccCHHHHHHHHHhCceeeeccCCCceEEECC
Confidence 4689999999999999999999999999999999986432 23432221
Q ss_pred -----HHH----H---------HHHHHHHHccc--ccCCceEEEcCcccHHHHhhcCCCcEEEEEecCHHHHHHHHhccc
Q 022951 122 -----EII----I---------NLLSKRLEAGE--AKGEAGFILDGFPRTEILEGVTDIDLVINLKLREEALLAKCLGRR 181 (289)
Q Consensus 122 -----~~~----~---------~ll~~~l~~~~--~~~~~g~Ildg~p~~~~l~~~~~~d~vI~Ld~~~e~l~~Rl~~R~ 181 (289)
... . ..+...+.... ...+.++|+||+...+ ..+..+|++|||+++.+++.+|+..+.
T Consensus 85 ~~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~vldg~~~~~--~~~~~~d~~i~l~~~~e~~~~R~~~~l 162 (227)
T 1cke_A 85 EDVSGEIRTQEVANAASQVAAFPRVREALLRRQRAFRELPGLIADGRDMGT--VVFPDAPVKIFLDASSEERAHRRMLQL 162 (227)
T ss_dssp EECHHHHTSHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCEEEEESSCCC--CCCTTCSEEEEEECCHHHHHHHHHHHH
T ss_pred eeCchhhCCHHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCCEEEECCCccc--eEecCCCEEEEEeCCHHHHHHHHHHHH
Confidence 110 0 11222222110 0114689999864321 112347999999999999999954321
Q ss_pred ccccCCCccccccccccCCCCCCCCCCCCCCCCCccccCccccCCCcHHHHHHHHH-HHHHhchHHHHHHHHcCcEEEEe
Q 022951 182 ICSECGGNYNVACIDIKGENGNPGMYMGPLLPPPHCASKLITRSDDKEEVVRERLR-IYNEKSRPVEEFYRRRGKLLEFD 260 (289)
Q Consensus 182 ~~~~~g~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~r~~d~~~~~~~rl~-~y~~~~~~l~~~y~~~~~l~~id 260 (289)
... |. ....++..+.+.+|+. .|.....++..+ ...+.||
T Consensus 163 ~~r--g~---------------------------------~~~~~~~~~~i~~R~~~~~~~~~~pl~~~----~~~~~Id 203 (227)
T 1cke_A 163 QVK--GF---------------------------------SVNFERLLAEIKERDDRDRNRAVAPLVPA----ADALVLD 203 (227)
T ss_dssp HHH--TC---------------------------------CCCHHHHHHHHC-------------CCCC----TTCEEEE
T ss_pred HhC--Cc---------------------------------cCCHHHHHHHHHHHHHhhhhhcccCccCC----CCEEEEe
Confidence 000 10 0001222333444432 233333333222 1247899
Q ss_pred CC-CCcccHHHHHHHHhcc
Q 022951 261 LP-GGIPESWPKLLQALNL 278 (289)
Q Consensus 261 ~~-~~~~ev~~~i~~~l~~ 278 (289)
++ +++++++++|.+.+..
T Consensus 204 ~~~~~~~ev~~~I~~~l~~ 222 (227)
T 1cke_A 204 STTLSIEQVIEKALQYARQ 222 (227)
T ss_dssp TTTSCHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHH
Confidence 88 7999999999998854
No 46
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=99.54 E-value=1.1e-13 Score=114.26 Aligned_cols=102 Identities=20% Similarity=0.259 Sum_probs=64.0
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhCCCeeehHHHHHHHHHcCCcc-------CHHHHHHHHHHHHHcccccCCce-EE
Q 022951 73 KHVQWVFLGCPGVGKGTYASRLSNLLGVPHIATGDLLDEIVSQGKLV-------SDEIIINLLSKRLEAGEAKGEAG-FI 144 (289)
Q Consensus 73 ~~~~Ivl~GppGsGKSTlak~La~~lg~~~i~~d~l~~~~l~~g~~v-------~~~~~~~ll~~~l~~~~~~~~~g-~I 144 (289)
.+.+|+|+|+|||||||+++.|++++|++++++|++.++.. |..+ ..+.+..+....+...... +.. +|
T Consensus 6 ~~~~i~l~G~~GsGKSTva~~La~~lg~~~id~D~~~~~~~--g~~~~~~~~~~g~~~~~~~~~~~l~~~~~~-~~~~Vi 82 (168)
T 1zuh_A 6 HMQHLVLIGFMGSGKSSLAQELGLALKLEVLDTDMIISERV--GLSVREIFEELGEDNFRMFEKNLIDELKTL-KTPHVI 82 (168)
T ss_dssp --CEEEEESCTTSSHHHHHHHHHHHHTCCEEEHHHHHHHHH--TSCHHHHHHHTCHHHHHHHHHHHHHHHHTC-SSCCEE
T ss_pred ccceEEEECCCCCCHHHHHHHHHHHhCCCEEEChHHHHHHh--CCCHHHHHHHhCHHHHHHHHHHHHHHHHhc-CCCEEE
Confidence 34578999999999999999999999999999999885543 2211 1122222111112111111 123 33
Q ss_pred EcC--cccHHHHhhcCCCcEEEEEecCHHHHHHHHhcc
Q 022951 145 LDG--FPRTEILEGVTDIDLVINLKLREEALLAKCLGR 180 (289)
Q Consensus 145 ldg--~p~~~~l~~~~~~d~vI~Ld~~~e~l~~Rl~~R 180 (289)
..| ++.. +.+..++.+|||++|++.+++|+..|
T Consensus 83 ~~g~g~~~~---~~l~~~~~vi~l~~~~e~~~~Rl~~r 117 (168)
T 1zuh_A 83 STGGGIVMH---ENLKGLGTTFYLKMDFETLIKRLNQK 117 (168)
T ss_dssp ECCGGGGGC---GGGTTSEEEEEEECCHHHHHHHHCC-
T ss_pred ECCCCEech---hHHhcCCEEEEEECCHHHHHHHHhcc
Confidence 333 2221 11445789999999999999999877
No 47
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=99.54 E-value=1.1e-13 Score=117.17 Aligned_cols=154 Identities=16% Similarity=0.132 Sum_probs=95.3
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHHh-CCCeeeh---------HHHHHHHHHcCCccCHHHHHHHHH--------HHHHc
Q 022951 73 KHVQWVFLGCPGVGKGTYASRLSNLL-GVPHIAT---------GDLLDEIVSQGKLVSDEIIINLLS--------KRLEA 134 (289)
Q Consensus 73 ~~~~Ivl~GppGsGKSTlak~La~~l-g~~~i~~---------d~l~~~~l~~g~~v~~~~~~~ll~--------~~l~~ 134 (289)
++++|+|+|+|||||||+++.|++.+ |+.++++ ++.+++++..+..+..... .++. ..+..
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~L~~~l~g~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~-~~l~~~~r~~~~~~i~~ 81 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMNIMESIPANTIKYLNFPQRSTVTGKMIDDYLTRKKTYNDHIV-NLLFCANRWEFASFIQE 81 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHTSCGGGEEEEESSCTTSHHHHHHHHHHTSSCCCCHHHH-HHHHHHHHHTTHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHCCCceEEEecCCCCCcHHHHHHHHHhcCCCCCHHHH-HHHHHHHHHHHHHHHHH
Confidence 45789999999999999999999998 5766653 2344556655544443322 2111 01111
Q ss_pred ccccCCceEEEcCcccH------------HHHh----hcCCCcEEEEEecCHHHHHHHHhcccccccCCCcccccccccc
Q 022951 135 GEAKGEAGFILDGFPRT------------EILE----GVTDIDLVINLKLREEALLAKCLGRRICSECGGNYNVACIDIK 198 (289)
Q Consensus 135 ~~~~~~~g~Ildg~p~~------------~~l~----~~~~~d~vI~Ld~~~e~l~~Rl~~R~~~~~~g~~y~~~~~~~~ 198 (289)
.... +..+|+|+|+.+ +.+. ....+|.+|||++|++++.+ +|..+
T Consensus 82 ~l~~-~~~vi~Dr~~~s~~~~~~~~g~~~~~~~~~~~~~~~~d~vi~l~~~~e~~~~---~R~~d--------------- 142 (204)
T 2v54_A 82 QLEQ-GITLIVDRYAFSGVAYAAAKGASMTLSKSYESGLPKPDLVIFLESGSKEINR---NVGEE--------------- 142 (204)
T ss_dssp HHHT-TCEEEEESCHHHHHHHHHHTTCCHHHHHHHHTTSBCCSEEEEECCCHHHHTT---CCSSS---------------
T ss_pred HHHC-CCEEEEECchhhHHHHHHccCCCHHHHHHHhcCCCCCCEEEEEeCCHHHHHh---hcCcc---------------
Confidence 1111 457899987764 1111 12358999999999998876 44211
Q ss_pred CCCCCCCCCCCCCCCCCccccCccccCCCcHHHHHHHHHH-HHHhchHHHHHHHHcCcEEEEeCCCCcccHHHHHHHHhc
Q 022951 199 GENGNPGMYMGPLLPPPHCASKLITRSDDKEEVVRERLRI-YNEKSRPVEEFYRRRGKLLEFDLPGGIPESWPKLLQALN 277 (289)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~L~~r~~d~~~~~~~rl~~-y~~~~~~l~~~y~~~~~l~~id~~~~~~ev~~~i~~~l~ 277 (289)
+.+. ..+.+|+.. |.+... . ....++.||+++++++++++|.+.+.
T Consensus 143 -------------------------~~e~--~~~~~rl~~~y~~~~~----~--~~~~~~~Id~~~~~~~v~~~i~~~l~ 189 (204)
T 2v54_A 143 -------------------------IYED--VTFQQKVLQEYKKMIE----E--GDIHWQIISSEFEEDVKKELIKNIVI 189 (204)
T ss_dssp -------------------------TTCC--SHHHHHHHHHHHHHHT----T--CSSCEEEECTTSCHHHHHHHHHHHHH
T ss_pred -------------------------cccH--HHHHHHHHHHHHHHHH----h--CCCcEEEEECCCCHHHHHHHHHHHHH
Confidence 0111 245555554 433211 1 12468899999999999999999886
Q ss_pred cC
Q 022951 278 LE 279 (289)
Q Consensus 278 ~~ 279 (289)
..
T Consensus 190 ~~ 191 (204)
T 2v54_A 190 EA 191 (204)
T ss_dssp HH
T ss_pred HH
Confidence 53
No 48
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=99.54 E-value=6.4e-14 Score=118.41 Aligned_cols=162 Identities=17% Similarity=0.143 Sum_probs=92.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhCCCeeehH----HHHHHHHHcCCccCHHHHHHHHHHHHHcc-cccCCceEEEcCcc
Q 022951 75 VQWVFLGCPGVGKGTYASRLSNLLGVPHIATG----DLLDEIVSQGKLVSDEIIINLLSKRLEAG-EAKGEAGFILDGFP 149 (289)
Q Consensus 75 ~~Ivl~GppGsGKSTlak~La~~lg~~~i~~d----~l~~~~l~~g~~v~~~~~~~ll~~~l~~~-~~~~~~g~Ildg~p 149 (289)
|+|+|+|++||||||+++.|++.++..++... .++..+...+...+.......+...+... .......+|+|+++
T Consensus 1 ~~I~i~G~~GsGKsT~~~~L~~~l~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~vi~d~~~ 80 (205)
T 2jaq_A 1 MKIAIFGTVGAGKSTISAEISKKLGYEIFKEPVEENPYFEQYYKDLKKTVFKMQIYMLTARSKQLKQAKNLENIIFDRTL 80 (205)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHCCEEECCCGGGCTTHHHHTTCHHHHHHHHHHHHHHHHHHHHC------CEEEESCT
T ss_pred CEEEEECCCccCHHHHHHHHHHhcCCcEEcccccccHHHHHHHhCccccchhHHHHHHHHHHHHHHHhhccCCEEEEecc
Confidence 57999999999999999999999998776421 12222221111111000011111111110 01012358999865
Q ss_pred cH----H-----------------------HHhhc-------CCCcEEEEEecCHHHHHHHHhcccccccCCCccccccc
Q 022951 150 RT----E-----------------------ILEGV-------TDIDLVINLKLREEALLAKCLGRRICSECGGNYNVACI 195 (289)
Q Consensus 150 ~~----~-----------------------~l~~~-------~~~d~vI~Ld~~~e~l~~Rl~~R~~~~~~g~~y~~~~~ 195 (289)
.. . ....+ ..+|.+|||++|++++++|+.+|... +.
T Consensus 81 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~d~vi~L~~~~e~~~~Rl~~R~r~------~~---- 150 (205)
T 2jaq_A 81 LEDPIFMKVNYDLNNVDQTDYNTYIDFYNNVVLENLKIPENKLSFDIVIYLRVSTKTAISRIKKRGRS------EE---- 150 (205)
T ss_dssp TTHHHHHHHHHHTTSSCHHHHHHHHHHHHHTTTTC------CCCCSEEEEEECCHHHHHHHHHHHTCH------HH----
T ss_pred chhHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhhcccccCCCCCEEEEEeCCHHHHHHHHHHcCCh------hh----
Confidence 42 0 11122 35899999999999999999877311 00
Q ss_pred cccCCCCCCCCCCCCCCCCCccccCccccCCCcHHHHHHHHHHHHHhchHHHHHHHHcCcEEEEeCCCCcccHHHHHHHH
Q 022951 196 DIKGENGNPGMYMGPLLPPPHCASKLITRSDDKEEVVRERLRIYNEKSRPVEEFYRRRGKLLEFDLPGGIPESWPKLLQA 275 (289)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~r~~d~~~~~~~rl~~y~~~~~~l~~~y~~~~~l~~id~~~~~~ev~~~i~~~ 275 (289)
.. . . ..+.+++..+... +.+.|......+.||+++++++++.+|.+.
T Consensus 151 ---------------------------~~-~-~-~~~~~~l~~~~~~---~~~~~~~~~~~~~Id~~~~~~~v~~~I~~~ 197 (205)
T 2jaq_A 151 ---------------------------LL-I-G-EEYWETLNKNYEE---FYKQNVYDFPFFVVDAELDVKTQIELIMNK 197 (205)
T ss_dssp ---------------------------HH-S-C-HHHHHHHHHHHHH---HHHHHTTTSCEEEEETTSCHHHHHHHHHHH
T ss_pred ---------------------------hc-C-c-HHHHHHHHHHHHH---HHHHccccCcEEEEECCCCHHHHHHHHHHH
Confidence 00 0 0 1333444443332 344554245688999999999999999998
Q ss_pred hccC
Q 022951 276 LNLE 279 (289)
Q Consensus 276 l~~~ 279 (289)
+..-
T Consensus 198 l~~~ 201 (205)
T 2jaq_A 198 LNSI 201 (205)
T ss_dssp HHHC
T ss_pred HHHh
Confidence 8643
No 49
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=99.53 E-value=1.4e-13 Score=117.39 Aligned_cols=157 Identities=16% Similarity=0.143 Sum_probs=91.3
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhCCCeeeh------------HHHHHHHHHcCCccCHHHHHHHHH-------HHHH
Q 022951 73 KHVQWVFLGCPGVGKGTYASRLSNLLGVPHIAT------------GDLLDEIVSQGKLVSDEIIINLLS-------KRLE 133 (289)
Q Consensus 73 ~~~~Ivl~GppGsGKSTlak~La~~lg~~~i~~------------d~l~~~~l~~g~~v~~~~~~~ll~-------~~l~ 133 (289)
++++|+|+|+|||||||+++.|++.++..++++ ++.++.++..+..++......+.. ..+.
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~L~~~l~~~~~~v~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~r~~~~~~i~ 87 (215)
T 1nn5_A 8 RGALIVLEGVDRAGKSTQSRKLVEALCAAGHRAELLRFPERSTEIGKLLSSYLQKKSDVEDHSVHLLFSANRWEQVPLIK 87 (215)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCTTSHHHHHHHHHHTTSSCCCHHHHHHHHHHHHHTTHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEeeCCCCCCcHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 567999999999999999999999876443332 234456665555555543221110 0111
Q ss_pred cccccCCceEEEcCccc-------------HHHHhh----cCCCcEEEEEecCHHHHHHHHhcccccccCCCcccccccc
Q 022951 134 AGEAKGEAGFILDGFPR-------------TEILEG----VTDIDLVINLKLREEALLAKCLGRRICSECGGNYNVACID 196 (289)
Q Consensus 134 ~~~~~~~~g~Ildg~p~-------------~~~l~~----~~~~d~vI~Ld~~~e~l~~Rl~~R~~~~~~g~~y~~~~~~ 196 (289)
..... +..+|+|.+.. .+.+.. +..+|++|||++|++++.+|+.+| .+
T Consensus 88 ~~l~~-~~~vi~dr~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~d~vi~l~~~~e~~~~Rl~r~-~~------------- 152 (215)
T 1nn5_A 88 EKLSQ-GVTLVVDRYAFSGVAFTGAKENFSLDWCKQPDVGLPKPDLVLFLQLQLADAAKRGAFG-HE------------- 152 (215)
T ss_dssp HHHHT-TCEEEEESCHHHHHHHHHTSTTCCHHHHHGGGTTSBCCSEEEEEECCHHHHHHC------C-------------
T ss_pred HHHHC-CCEEEEeCCcccHHHHHhhcCCCCHHHHHHHHhCCCCCCEEEEEeCCHHHHHHHhccC-cc-------------
Confidence 11111 45788995321 122222 235899999999999999999633 11
Q ss_pred ccCCCCCCCCCCCCCCCCCccccCccccCCCcHHHHHHHHH-HHHHhchHHHHHHHHcCcEEEEeCCCCcccHHHHHHHH
Q 022951 197 IKGENGNPGMYMGPLLPPPHCASKLITRSDDKEEVVRERLR-IYNEKSRPVEEFYRRRGKLLEFDLPGGIPESWPKLLQA 275 (289)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~L~~r~~d~~~~~~~rl~-~y~~~~~~l~~~y~~~~~l~~id~~~~~~ev~~~i~~~ 275 (289)
+.+. ..+.+++. .|.+... . ....++.||+++++++++++|.+.
T Consensus 153 ---------------------------~~~~--~~~~~~~~~~~~~~~~----~--~~~~~~~Id~~~~~e~~~~~i~~~ 197 (215)
T 1nn5_A 153 ---------------------------RYEN--GAFQERALRCFHQLMK----D--TTLNWKMVDASKSIEAVHEDIRVL 197 (215)
T ss_dssp ---------------------------TTCS--HHHHHHHHHHHHHHTT----C--TTSCEEEEETTSCHHHHHHHHHHH
T ss_pred ---------------------------ccch--HHHHHHHHHHHHHHHH----h--CCCCEEEEECCCCHHHHHHHHHHH
Confidence 1111 12333333 2322211 0 124578999999999999999988
Q ss_pred hccC
Q 022951 276 LNLE 279 (289)
Q Consensus 276 l~~~ 279 (289)
+..-
T Consensus 198 l~~~ 201 (215)
T 1nn5_A 198 SEDA 201 (215)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8653
No 50
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=99.53 E-value=2.4e-13 Score=119.35 Aligned_cols=161 Identities=19% Similarity=0.175 Sum_probs=93.2
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhC---CC-eee--------hHHHHHHHHHcC---CccCHHHHH--------HHHH
Q 022951 73 KHVQWVFLGCPGVGKGTYASRLSNLLG---VP-HIA--------TGDLLDEIVSQG---KLVSDEIII--------NLLS 129 (289)
Q Consensus 73 ~~~~Ivl~GppGsGKSTlak~La~~lg---~~-~i~--------~d~l~~~~l~~g---~~v~~~~~~--------~ll~ 129 (289)
++++|+|.|++||||||+++.|++.++ +. .+. .++.+++++..+ ..+...... +.+.
T Consensus 26 ~~~~i~~eG~~GsGKsT~~~~l~~~l~~~~~~~~~~~rep~~t~~g~~ir~~l~~~~~~~~~~~~~e~lLf~A~R~~~~~ 105 (236)
T 3lv8_A 26 NAKFIVIEGLEGAGKSTAIQVVVETLQQNGIDHITRTREPGGTLLAEKLRALVKEEHPGEELQDITELLLVYAARVQLVE 105 (236)
T ss_dssp CCCEEEEEESTTSCHHHHHHHHHHHHHHTTCCCEEEEESSCSSHHHHHHHHHHHSCCTTSCCCHHHHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhcCCCeeeeecCCCCCHHHHHHHHHHhhCCCcccCCHHHHHHHHHHHHHHHHH
Confidence 357899999999999999999999884 33 221 345566776532 223332111 1111
Q ss_pred HHHHcccccCCceEEEcCcccH-------------HHH---h----hcCCCcEEEEEecCHHHHHHHHhcccccccCCCc
Q 022951 130 KRLEAGEAKGEAGFILDGFPRT-------------EIL---E----GVTDIDLVINLKLREEALLAKCLGRRICSECGGN 189 (289)
Q Consensus 130 ~~l~~~~~~~~~g~Ildg~p~~-------------~~l---~----~~~~~d~vI~Ld~~~e~l~~Rl~~R~~~~~~g~~ 189 (289)
..+...... +..+|+|.|..+ +.+ . ....||++||||+|++++++|+.+|...
T Consensus 106 ~~I~paL~~-g~~VI~DRy~~S~~AYq~~~rgl~~~~i~~l~~~~~~~~~PDlvi~Ldv~~e~~~~Ri~~R~~~------ 178 (236)
T 3lv8_A 106 NVIKPALAR-GEWVVGDRHDMSSQAYQGGGRQIAPSTMQSLKQTALGDFKPDLTLYLDIDPKLGLERARGRGEL------ 178 (236)
T ss_dssp HTHHHHHHT-TCEEEEESCHHHHHHHTTTTTCCCHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHC-----CC------
T ss_pred HHHHHHHHc-CCEEEEeeecchHHhhhhhccCCCHHHHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHHhcCCc------
Confidence 111111111 457888875444 111 1 1246999999999999999999988410
Q ss_pred cccccccccCCCCCCCCCCCCCCCCCccccCccccCCCcHHHHHHHHH-HHHHhchHHHHHHHHcCcEEEEeCCCCcccH
Q 022951 190 YNVACIDIKGENGNPGMYMGPLLPPPHCASKLITRSDDKEEVVRERLR-IYNEKSRPVEEFYRRRGKLLEFDLPGGIPES 268 (289)
Q Consensus 190 y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~r~~d~~~~~~~rl~-~y~~~~~~l~~~y~~~~~l~~id~~~~~~ev 268 (289)
.|.+.....+.+|+. .|.+. +.+...++.||++++++++
T Consensus 179 ---------------------------------dr~E~~~~~~~~rv~~~y~~l-------a~~~~~~~vIDa~~sieeV 218 (236)
T 3lv8_A 179 ---------------------------------DRIEKMDISFFERARERYLEL-------ANSDDSVVMIDAAQSIEQV 218 (236)
T ss_dssp ---------------------------------CTTTTSCHHHHHHHHHHHHHH-------HHHCTTEEEEETTSCHHHH
T ss_pred ---------------------------------chhhhhHHHHHHHHHHHHHHH-------HHHCCCEEEEeCCCCHHHH
Confidence 011111123444443 33322 2222349999999999999
Q ss_pred HHHHHHHhccCC
Q 022951 269 WPKLLQALNLED 280 (289)
Q Consensus 269 ~~~i~~~l~~~~ 280 (289)
.++|.++|..-.
T Consensus 219 ~~~I~~~l~~~l 230 (236)
T 3lv8_A 219 TADIRRALQDWL 230 (236)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999887543
No 51
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=99.53 E-value=2.8e-13 Score=117.17 Aligned_cols=159 Identities=16% Similarity=0.176 Sum_probs=97.5
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHHHh---CC-Ceee--------hHHHHHHHHHcC-----CccCHHHHH----H----HH
Q 022951 74 HVQWVFLGCPGVGKGTYASRLSNLL---GV-PHIA--------TGDLLDEIVSQG-----KLVSDEIII----N----LL 128 (289)
Q Consensus 74 ~~~Ivl~GppGsGKSTlak~La~~l---g~-~~i~--------~d~l~~~~l~~g-----~~v~~~~~~----~----ll 128 (289)
+++|+|.|++||||||+++.|++.+ |+ ..+. .++.+++++... ..+...... . .+
T Consensus 3 g~~i~~eG~~gsGKsT~~~~l~~~l~~~~~~~v~~~rep~~t~~g~~ir~~l~~~~~~~~~~~~~~~e~lL~~A~R~~~~ 82 (213)
T 4tmk_A 3 SKYIVIEGLEGAGKTTARNVVVETLEQLGIRDMVFTREPGGTQLAEKLRSLLLDIKSVGDEVITDKAEVLMFYAARVQLV 82 (213)
T ss_dssp CCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEESSCSSHHHHHHHHHHHSTTTTTTCCCCHHHHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCCcceeeeCCCCCHHHHHHHHHHhcccccccccCChHHHHHHHHHHHHHHH
Confidence 5789999999999999999999987 43 2221 355667777632 233332111 1 11
Q ss_pred HHHHHcccccCCceEEEcCcccH-------------HH---Hh----hcCCCcEEEEEecCHHHHHHHHhcccccccCCC
Q 022951 129 SKRLEAGEAKGEAGFILDGFPRT-------------EI---LE----GVTDIDLVINLKLREEALLAKCLGRRICSECGG 188 (289)
Q Consensus 129 ~~~l~~~~~~~~~g~Ildg~p~~-------------~~---l~----~~~~~d~vI~Ld~~~e~l~~Rl~~R~~~~~~g~ 188 (289)
.+.+...... +..||+|.|..+ +. +. ....||++||||+|+++.++|+.+|...
T Consensus 83 ~~~i~paL~~-g~~VI~DRy~~S~~AYq~~~~g~~~~~~~~l~~~~~~~~~PDl~i~Ldv~~e~~~~Ri~~R~~~----- 156 (213)
T 4tmk_A 83 ETVIKPALAN-GTWVIGDRHDLSTQAYQGGGRGIDQHMLATLRDAVLGDFRPDLTLYLDVTPEVGLKRARARGEL----- 156 (213)
T ss_dssp HHTHHHHHHT-TCEEEEECCHHHHHHHTTTTTCCCHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHHHHHHSSC-----
T ss_pred HHHHHHHHHC-CCEEEEcCcHhHHHHHcccccCCCHHHHHHHHHHhccCCCCCEEEEEeCCHHHHHHHHHhcCCc-----
Confidence 1111111111 457888876554 11 11 1236999999999999999999988410
Q ss_pred ccccccccccCCCCCCCCCCCCCCCCCccccCccccCCC-cHHHHHHHHHHHHHhchHHHHHHHHcCcEEEEeCCCCccc
Q 022951 189 NYNVACIDIKGENGNPGMYMGPLLPPPHCASKLITRSDD-KEEVVRERLRIYNEKSRPVEEFYRRRGKLLEFDLPGGIPE 267 (289)
Q Consensus 189 ~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~r~~d-~~~~~~~rl~~y~~~~~~l~~~y~~~~~l~~id~~~~~~e 267 (289)
.|.+. ..+.+++..+.|.... ...+.++.||+++++++
T Consensus 157 ----------------------------------dr~E~~~~~f~~rv~~~y~~la-------~~~~~~~vIDa~~s~ee 195 (213)
T 4tmk_A 157 ----------------------------------DRIEQESFDFFNRTRARYLELA-------AQDKSIHTIDATQPLEA 195 (213)
T ss_dssp ----------------------------------CTTTTSCHHHHHHHHHHHHHHH-------HTCTTEEEEETTSCHHH
T ss_pred ----------------------------------cchhhhHHHHHHHHHHHHHHHH-------HHCCcEEEECCCCCHHH
Confidence 01111 2333333333343321 12357999999999999
Q ss_pred HHHHHHHHhccC
Q 022951 268 SWPKLLQALNLE 279 (289)
Q Consensus 268 v~~~i~~~l~~~ 279 (289)
++.+|.++|..-
T Consensus 196 V~~~I~~~l~~~ 207 (213)
T 4tmk_A 196 VMDAIRTTVTHW 207 (213)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999988653
No 52
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=99.53 E-value=1.4e-13 Score=123.87 Aligned_cols=154 Identities=17% Similarity=0.186 Sum_probs=96.2
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHHHhCCCeeehHHHHHHHHHcC------------C-------ccCHHHH--------
Q 022951 72 GKHVQWVFLGCPGVGKGTYASRLSNLLGVPHIATGDLLDEIVSQG------------K-------LVSDEII-------- 124 (289)
Q Consensus 72 ~~~~~Ivl~GppGsGKSTlak~La~~lg~~~i~~d~l~~~~l~~g------------~-------~v~~~~~-------- 124 (289)
.++++|+|+|++||||||+|+.|+ .+|++++++|++.++....+ . .+....+
T Consensus 73 ~~~~iI~I~G~~GSGKSTva~~La-~lg~~~id~D~~~~~~~~~~~~~~~~i~~~~g~~i~~~~g~idr~~l~~~vf~~~ 151 (281)
T 2f6r_A 73 SGLYVLGLTGISGSGKSSVAQRLK-NLGAYIIDSDHLGHRAYAPGGPAYQPVVEAFGTDILHKDGTINRKVLGSRVFGNK 151 (281)
T ss_dssp TTCEEEEEEECTTSCHHHHHHHHH-HHTCEEEEHHHHHHHHTSTTSTTHHHHHHHHCGGGBCTTSSBCHHHHHHHHTTCH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHH-HCCCcEEehhHHHHHHhcCChHHHHHHHHHcCccccCCCCCcCHHHHHHHHhCCH
Confidence 457899999999999999999999 68999999999864432211 1 1111110
Q ss_pred --------------HHHHHHHHHcccccCCceEEEcCcccH-HHHhhcCCCcEEEEEecCHHHHHHHHhcccccccCCCc
Q 022951 125 --------------INLLSKRLEAGEAKGEAGFILDGFPRT-EILEGVTDIDLVINLKLREEALLAKCLGRRICSECGGN 189 (289)
Q Consensus 125 --------------~~ll~~~l~~~~~~~~~g~Ildg~p~~-~~l~~~~~~d~vI~Ld~~~e~l~~Rl~~R~~~~~~g~~ 189 (289)
...+...+......+...||+||.... ..+.. .+|.+|||++|++++.+|+..|..
T Consensus 152 ~~~~~l~~i~~P~i~~~~~~~~~~~~~~~~~~vIveg~~l~~~~~~~--~~d~vI~l~a~~ev~~~Rl~~R~g------- 222 (281)
T 2f6r_A 152 KQMKILTDIVWPVIAKLAREEMDVAVAKGKTLCVIDAAMLLEAGWQS--MVHEVWTVVIPETEAVRRIVERDG------- 222 (281)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEECTTTTTTTGGG--GCSEEEEEECCHHHHHHHHHHHHC-------
T ss_pred HHHHHhhcccChHHHHHHHHHHHHHhccCCCEEEEEechhhccchHH--hCCEEEEEcCCHHHHHHHHHHcCC-------
Confidence 001112221111111347999995332 22222 268999999999999999998731
Q ss_pred cccccccccCCCCCCCCCCCCCCCCCccccCccccCCCcHHHHHHHHHHHHHhchHHHHHHHHcCcEEEEeCCCCcccHH
Q 022951 190 YNVACIDIKGENGNPGMYMGPLLPPPHCASKLITRSDDKEEVVRERLRIYNEKSRPVEEFYRRRGKLLEFDLPGGIPESW 269 (289)
Q Consensus 190 y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~r~~d~~~~~~~rl~~y~~~~~~l~~~y~~~~~l~~id~~~~~~ev~ 269 (289)
.+.+.+..|+... . +...++.. .. +.||+++++++++
T Consensus 223 -------------------------------------~s~e~~~~ri~~q---~-~~~~~~~~-AD-~vIdn~~s~eel~ 259 (281)
T 2f6r_A 223 -------------------------------------LSEAAAQSRLQSQ---M-SGQQLVEQ-SN-VVLSTLWESHVTQ 259 (281)
T ss_dssp -------------------------------------CCHHHHHHHHHTS---C-CHHHHHHT-CS-EEEECSSCHHHHH
T ss_pred -------------------------------------CCHHHHHHHHHHc---C-ChHhhHhh-CC-EEEECCCCHHHHH
Confidence 1234455555443 2 12333332 23 5688888999999
Q ss_pred HHHHHHhcc
Q 022951 270 PKLLQALNL 278 (289)
Q Consensus 270 ~~i~~~l~~ 278 (289)
.+|.+++..
T Consensus 260 ~~I~~~l~~ 268 (281)
T 2f6r_A 260 SQVEKAWNL 268 (281)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999988753
No 53
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=99.52 E-value=1.6e-13 Score=116.98 Aligned_cols=148 Identities=16% Similarity=0.165 Sum_probs=91.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhCCCeeehHHHHHHHHHc------------CCccCH-------HH----------H-
Q 022951 75 VQWVFLGCPGVGKGTYASRLSNLLGVPHIATGDLLDEIVSQ------------GKLVSD-------EI----------I- 124 (289)
Q Consensus 75 ~~Ivl~GppGsGKSTlak~La~~lg~~~i~~d~l~~~~l~~------------g~~v~~-------~~----------~- 124 (289)
++|+|+|++||||||+++.|++ +|+++++.|++.+..... |..+.. .. .
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~-lg~~~id~d~~~~~~~~~~~~~~~~i~~~~g~~~~~~~g~~~r~~l~~~~f~~~~~~ 81 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD-LGVPLVDADVVAREVVAKDSPLLSKIVEHFGAQILTEQGELNRAALRERVFNHDEDK 81 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT-TTCCEEEHHHHHHHTTCSSCHHHHHHHHHHCTTCC------CHHHHHHHHHTCHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH-CCCcccchHHHHHHHccCChHHHHHHHHHhCHHHhccCccccHHHHHHHHhCCHHHH
Confidence 5789999999999999999988 999999999987442211 211111 00 0
Q ss_pred ---H----HHH----HHHHHcccccCCceEEEcCcccHHH-HhhcCCCcEEEEEecCHHHHHHHHhcccccccCCCcccc
Q 022951 125 ---I----NLL----SKRLEAGEAKGEAGFILDGFPRTEI-LEGVTDIDLVINLKLREEALLAKCLGRRICSECGGNYNV 192 (289)
Q Consensus 125 ---~----~ll----~~~l~~~~~~~~~g~Ildg~p~~~~-l~~~~~~d~vI~Ld~~~e~l~~Rl~~R~~~~~~g~~y~~ 192 (289)
. ..+ ...+... . +.++|+|+....+. +.. .+|.+|||++|.+++.+|+..|.
T Consensus 82 ~~l~~~~~p~v~~~~~~~~~~~--~-~~~vv~~~~~l~e~~~~~--~~d~vi~l~~~~e~~~~Rl~~R~----------- 145 (206)
T 1jjv_A 82 LWLNNLLHPAIRERMKQKLAEQ--T-APYTLFVVPLLIENKLTA--LCDRILVVDVSPQTQLARSAQRD----------- 145 (206)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTC--C-SSEEEEECTTTTTTTCGG--GCSEEEEEECCHHHHHHHHC--------------
T ss_pred HHHHhccCHHHHHHHHHHHHhc--C-CCEEEEEechhhhcCcHh--hCCEEEEEECCHHHHHHHHHHcC-----------
Confidence 0 011 1112111 1 34788887222111 222 26899999999999999998873
Q ss_pred ccccccCCCCCCCCCCCCCCCCCccccCccccCCCcHHHHHHHHHHHHHhchHHHHHHHHcCcEEEEeCCCCcc----cH
Q 022951 193 ACIDIKGENGNPGMYMGPLLPPPHCASKLITRSDDKEEVVRERLRIYNEKSRPVEEFYRRRGKLLEFDLPGGIP----ES 268 (289)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~r~~d~~~~~~~rl~~y~~~~~~l~~~y~~~~~l~~id~~~~~~----ev 268 (289)
..+.+.+.+|++. . .+....|.... +.||++++++ ++
T Consensus 146 ---------------------------------~~~~e~~~~r~~~---q-~~~~~~~~~ad--~vIdn~~~~~~~~~~~ 186 (206)
T 1jjv_A 146 ---------------------------------NNNFEQIQRIMNS---Q-VSQQERLKWAD--DVINNDAELAQNLPHL 186 (206)
T ss_dssp -----------------------------------CHHHHHHHHHH---S-CCHHHHHHHCS--EEEECCSCHHHHHHHH
T ss_pred ---------------------------------CCCHHHHHHHHHh---c-CChHHHHHhCC--EEEECCCCccccHHHH
Confidence 1124556666654 1 12334444333 5688888999 99
Q ss_pred HHHHHHHhcc
Q 022951 269 WPKLLQALNL 278 (289)
Q Consensus 269 ~~~i~~~l~~ 278 (289)
+++|.+.+..
T Consensus 187 ~~~i~~~~~~ 196 (206)
T 1jjv_A 187 QQKVLELHQF 196 (206)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999988854
No 54
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=99.52 E-value=1.2e-13 Score=117.87 Aligned_cols=153 Identities=14% Similarity=0.151 Sum_probs=97.9
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhCC-----------------------CeeehHHHHHHHHHcCCccCHHH------
Q 022951 73 KHVQWVFLGCPGVGKGTYASRLSNLLGV-----------------------PHIATGDLLDEIVSQGKLVSDEI------ 123 (289)
Q Consensus 73 ~~~~Ivl~GppGsGKSTlak~La~~lg~-----------------------~~i~~d~l~~~~l~~g~~v~~~~------ 123 (289)
++++|+|+|||||||||+++.|++.++. .+++.+++. ..+..|..+....
T Consensus 11 ~~~~i~l~G~sGsGKsTl~~~L~~~~~~~~~~~~~~ttR~~~~~e~~g~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 89 (204)
T 2qor_A 11 RIPPLVVCGPSGVGKGTLIKKVLSEFPSRFRFSISCTTRNKREKETNGVDYYFVDKDDFE-RKLKEGQFLEFDKYANNFY 89 (204)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHCTTTEEECCEEECSCCCTTCCBTTTEEECCHHHHH-HHHHTTCEEEEEEETTEEE
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHhCccceeeeeeecCCCCCCCCCCCcceeeCCHHHHH-HHHHcCCCEEeHHhCCCee
Confidence 4578999999999999999999998842 223333333 4444444322100
Q ss_pred --HHHHHHHHHHcccccCCceEEEcCcccH-HHHhhcCC--CcEEEEEe-cCHHHHHHHHhcccccccCCCccccccccc
Q 022951 124 --IINLLSKRLEAGEAKGEAGFILDGFPRT-EILEGVTD--IDLVINLK-LREEALLAKCLGRRICSECGGNYNVACIDI 197 (289)
Q Consensus 124 --~~~ll~~~l~~~~~~~~~g~Ildg~p~~-~~l~~~~~--~d~vI~Ld-~~~e~l~~Rl~~R~~~~~~g~~y~~~~~~~ 197 (289)
....+...+.. +..+|+|+.+.. ..+..... ..++|||+ ++.+++.+|+..|.
T Consensus 90 ~~~~~~i~~~l~~-----g~~vi~d~~~~~~~~l~~~~~~~~~~~i~l~~~s~e~l~~Rl~~R~---------------- 148 (204)
T 2qor_A 90 GTLKSEYDLAVGE-----GKICLFEMNINGVKQLKESKHIQDGIYIFVKPPSIDILLGRLKNRN---------------- 148 (204)
T ss_dssp EEEHHHHHHHHHT-----TCEEEEECCHHHHHHHHHCSSCSCCEEEEEECSCHHHHHHHHHTCT----------------
T ss_pred cCCHHHHHHHHHc-----CCeEEEEECHHHHHHHHHhcCCCCeEEEEEcCCCHHHHHHHHHHcC----------------
Confidence 01123333332 458999986654 44444332 24899998 99999999998874
Q ss_pred cCCCCCCCCCCCCCCCCCccccCccccCCCcHHHHHHHHHHHHHhchHHHHHHHHcCcEEEEeCCCCcccHHHHHHHHhc
Q 022951 198 KGENGNPGMYMGPLLPPPHCASKLITRSDDKEEVVRERLRIYNEKSRPVEEFYRRRGKLLEFDLPGGIPESWPKLLQALN 277 (289)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~L~~r~~d~~~~~~~rl~~y~~~~~~l~~~y~~~~~l~~id~~~~~~ev~~~i~~~l~ 277 (289)
.++++.+++|+..++....+. |.....++.+| + ++++++++|.++|.
T Consensus 149 ----------------------------~~~~~~i~~rl~~~~~~~~~~---~~~~~d~vi~n-~-~~e~~~~~i~~~i~ 195 (204)
T 2qor_A 149 ----------------------------TEKPEEINKRMQELTREMDEA---DKVGFNYFIVN-D-DLARTYAELREYLL 195 (204)
T ss_dssp ----------------------------TSCHHHHHHHHHHHHHHHHHH---HHHTCSEEEEC-S-SHHHHHHHHHHHHH
T ss_pred ----------------------------CCCHHHHHHHHHHHHHHHHHh---hhccCcEEEEC-c-CHHHHHHHHHHHHH
Confidence 134577888888776543321 33334455444 4 89999999999997
Q ss_pred cCC
Q 022951 278 LED 280 (289)
Q Consensus 278 ~~~ 280 (289)
...
T Consensus 196 ~~~ 198 (204)
T 2qor_A 196 GSY 198 (204)
T ss_dssp HHC
T ss_pred HHh
Confidence 654
No 55
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=99.52 E-value=7.5e-14 Score=116.06 Aligned_cols=152 Identities=17% Similarity=0.139 Sum_probs=90.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhCCCeeehHHHHHHHHHcCCccCH-------HHHHHHHHHHHHcccccCCceEEEc-
Q 022951 75 VQWVFLGCPGVGKGTYASRLSNLLGVPHIATGDLLDEIVSQGKLVSD-------EIIINLLSKRLEAGEAKGEAGFILD- 146 (289)
Q Consensus 75 ~~Ivl~GppGsGKSTlak~La~~lg~~~i~~d~l~~~~l~~g~~v~~-------~~~~~ll~~~l~~~~~~~~~g~Ild- 146 (289)
++|+|+|+|||||||+++.|++.+|+++++.|++++... |..+.+ ..+.......+..... ...+|++
T Consensus 5 ~~i~i~G~~GsGKsTla~~La~~l~~~~~d~d~~~~~~~--g~~~~~~~~~~g~~~~~~~~~~~~~~l~~--~~~~vi~~ 80 (175)
T 1via_A 5 KNIVFIGFMGSGKSTLARALAKDLDLVFLDSDFLIEQKF--NQKVSEIFEQKRENFFREQEQKMADFFSS--CEKACIAT 80 (175)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHHTCEEEEHHHHHHHHH--TSCHHHHHHHHCHHHHHHHHHHHHHHHTT--CCSEEEEC
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHcCCCEEcccHHHHHHc--CCCHHHHHHHcCHHHHHHHHHHHHHHHHc--cCCEEEEC
Confidence 368999999999999999999999999999999875431 221111 1111111111211111 2355555
Q ss_pred CcccH-HHHhhcCCCcEEEEEecCHHHHHHHHhcccccccCCCccccccccccCCCCCCCCCCCCCCCCCccccCccccC
Q 022951 147 GFPRT-EILEGVTDIDLVINLKLREEALLAKCLGRRICSECGGNYNVACIDIKGENGNPGMYMGPLLPPPHCASKLITRS 225 (289)
Q Consensus 147 g~p~~-~~l~~~~~~d~vI~Ld~~~e~l~~Rl~~R~~~~~~g~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~r~ 225 (289)
|.+.. . ..+...+.+|||++|.+.+.+|+..|... .|+
T Consensus 81 g~~~~~~--~~l~~~~~~i~l~~~~e~~~~R~~~r~~~---------------------------------------~r~ 119 (175)
T 1via_A 81 GGGFVNV--SNLEKAGFCIYLKADFEYLKKRLDKDEIS---------------------------------------KRP 119 (175)
T ss_dssp CTTGGGS--TTGGGGCEEEEEECCHHHHTTCCCGGGTT---------------------------------------TSC
T ss_pred CCCEehh--hHHhcCCEEEEEeCCHHHHHHHHhcccCC---------------------------------------CCC
Confidence 54332 1 11333579999999999999998766310 011
Q ss_pred CCc-HHHHHHHHHHHHHhchHHHHHHHHcCcEEEEeCC-CCcccHHHHHHHHhccC
Q 022951 226 DDK-EEVVRERLRIYNEKSRPVEEFYRRRGKLLEFDLP-GGIPESWPKLLQALNLE 279 (289)
Q Consensus 226 ~d~-~~~~~~rl~~y~~~~~~l~~~y~~~~~l~~id~~-~~~~ev~~~i~~~l~~~ 279 (289)
... .+.++..+. ....+|.... .+.||++ .++++++.+|.+.+..-
T Consensus 120 ~~~~~~~i~~~~~-------~r~~~y~~~~-~~~Idt~~~~~eev~~~I~~~l~~~ 167 (175)
T 1via_A 120 LFYDEIKAKKLYN-------ERLSKYEQKA-NFILNIENKNIDELLSEIKKVIKEG 167 (175)
T ss_dssp TTCCHHHHHHHHH-------HHHHHHHHHC-SEEEECTTCCHHHHHHHHHHHHC--
T ss_pred CcccHHHHHHHHH-------HHHHHHHhcC-CEEEECCCCCHHHHHHHHHHHHHhc
Confidence 111 233332222 1224454322 4778988 79999999999988653
No 56
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=99.51 E-value=9.1e-14 Score=123.42 Aligned_cols=158 Identities=19% Similarity=0.208 Sum_probs=96.8
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHH---hCCCee--ehHHHHHHHHHcCCccCHHHHHHHHHHHHHcccccCCceEEEcC
Q 022951 73 KHVQWVFLGCPGVGKGTYASRLSNL---LGVPHI--ATGDLLDEIVSQGKLVSDEIIINLLSKRLEAGEAKGEAGFILDG 147 (289)
Q Consensus 73 ~~~~Ivl~GppGsGKSTlak~La~~---lg~~~i--~~d~l~~~~l~~g~~v~~~~~~~ll~~~l~~~~~~~~~g~Ildg 147 (289)
++++|+|+|+|||||||+|+.|++. +|+.++ +.|.+.... ..-.......+.......+.... . ...+|+|+
T Consensus 3 ~~~lIvl~G~pGSGKSTla~~La~~L~~~g~~~i~~~~D~~~~~l-~~~~~~~e~~~~~~~~~~i~~~l-~-~~~vIiD~ 79 (260)
T 3a4m_A 3 DIMLIILTGLPGVGKSTFSKNLAKILSKNNIDVIVLGSDLIRESF-PVWKEKYEEFIKKSTYRLIDSAL-K-NYWVIVDD 79 (260)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECTHHHHTTS-SSCCGGGHHHHHHHHHHHHHHHH-T-TSEEEECS
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHHHHhCCCEEEEECchHHHHHH-hhhhHHHHHHHHHHHHHHHHHHh-h-CCEEEEeC
Confidence 4678999999999999999999998 788877 877665221 11000011222222222222111 1 14899998
Q ss_pred cccH----HHHh----hcCCCcEEEEEecCHHHHHHHHhcccccccCCCccccccccccCCCCCCCCCCCCCCCCCcccc
Q 022951 148 FPRT----EILE----GVTDIDLVINLKLREEALLAKCLGRRICSECGGNYNVACIDIKGENGNPGMYMGPLLPPPHCAS 219 (289)
Q Consensus 148 ~p~~----~~l~----~~~~~d~vI~Ld~~~e~l~~Rl~~R~~~~~~g~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (289)
.... ..+. ....++++|||++|.+++.+|+.+|..
T Consensus 80 ~~~~~~~~~~l~~~a~~~~~~~~vi~l~~~~e~~~~R~~~R~~------------------------------------- 122 (260)
T 3a4m_A 80 TNYYNSMRRDLINIAKKYNKNYAIIYLKASLDVLIRRNIERGE------------------------------------- 122 (260)
T ss_dssp CCCSHHHHHHHHHHHHHTTCEEEEEEEECCHHHHHHHHHHTTC-------------------------------------
T ss_pred CcccHHHHHHHHHHHHHcCCCEEEEEEeCCHHHHHHHHHhCCC-------------------------------------
Confidence 4432 2222 233478999999999999999988731
Q ss_pred CccccCCCcHHHHHHHHHHHHHhchHHHHHHHHcCcEEEEeCCC--CcccHHHHHHHHhccCC
Q 022951 220 KLITRSDDKEEVVRERLRIYNEKSRPVEEFYRRRGKLLEFDLPG--GIPESWPKLLQALNLED 280 (289)
Q Consensus 220 ~L~~r~~d~~~~~~~rl~~y~~~~~~l~~~y~~~~~l~~id~~~--~~~ev~~~i~~~l~~~~ 280 (289)
....+.++.....|... . ..|......+.||+++ ++++++..|.+.+....
T Consensus 123 ------~~~~~~l~~~~~~~e~~---~-~~~~~~~~~~~Id~~~~~~~~ei~~~I~~~l~~~~ 175 (260)
T 3a4m_A 123 ------KIPNEVIKKMYEKFDEP---G-KKYKWDEPFLIIDTTKDIDFNEIAKKLIEKSKEIP 175 (260)
T ss_dssp ------SSCHHHHHHHHHHCCCT---T-SSCGGGCCSEEEETTSCCCHHHHHHHHHHHHTSCC
T ss_pred ------CCCHHHHHHHHHHhcCc---c-ccCCCCCCEEEEeCCCCCCHHHHHHHHHhcccCCC
Confidence 01134454444443321 1 1122123467899887 78999999999987654
No 57
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=99.51 E-value=8.2e-13 Score=112.81 Aligned_cols=155 Identities=20% Similarity=0.224 Sum_probs=92.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHh---CCCeee--------hHHHHHHHHHcCCccCHHHHHHH------HHHHHHcccc
Q 022951 75 VQWVFLGCPGVGKGTYASRLSNLL---GVPHIA--------TGDLLDEIVSQGKLVSDEIIINL------LSKRLEAGEA 137 (289)
Q Consensus 75 ~~Ivl~GppGsGKSTlak~La~~l---g~~~i~--------~d~l~~~~l~~g~~v~~~~~~~l------l~~~l~~~~~ 137 (289)
|+|+|.|+.||||||+++.|++.| |..++. .++.++.++......+.....-. +...+....
T Consensus 1 mfI~~EG~DGsGKsTq~~~L~~~L~~~g~~v~~treP~~t~~~~~ir~~l~~~~~~~~~~~ll~~a~r~~~~~~I~~~L- 79 (197)
T 3hjn_A 1 MFITFEGIDGSGKSTQIQLLAQYLEKRGKKVILKREPGGTETGEKIRKILLEEEVTPKAELFLFLASRNLLVTEIKQYL- 79 (197)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSCSSHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEECCCCCcHHHHHHHHhhcccCChHHHHHHHHHHHHHHHHHHHHHH-
Confidence 689999999999999999999987 555542 24444555544443322211000 111121111
Q ss_pred cCCceEEEcCcccH-------------HHHhh-------cCCCcEEEEEecCHHHHHHHHhcccccccCCCccccccccc
Q 022951 138 KGEAGFILDGFPRT-------------EILEG-------VTDIDLVINLKLREEALLAKCLGRRICSECGGNYNVACIDI 197 (289)
Q Consensus 138 ~~~~g~Ildg~p~~-------------~~l~~-------~~~~d~vI~Ld~~~e~l~~Rl~~R~~~~~~g~~y~~~~~~~ 197 (289)
..+..||+|.|..+ +.+.. ...||++||||+|++..++|...|.
T Consensus 80 ~~g~~Vi~DRy~~S~~ayq~~~~~~~~~~i~~l~~~~~~~~~PDl~i~Ld~~~e~~~~R~~~~d---------------- 143 (197)
T 3hjn_A 80 SEGYAVLLDRYTDSSVAYQGFGRNLGKEIVEELNDFATDGLIPDLTFYIDVDVETALKRKGELN---------------- 143 (197)
T ss_dssp TTTCEEEEESCHHHHHHHHTTTTCSCHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHHC---C----------------
T ss_pred HCCCeEEecccchHHHHHHHhccCCCHHHHHHHHhhhhcCCCCCceeecCcChHHHHHhCcCcC----------------
Confidence 11457888876554 11111 1359999999999999999854331
Q ss_pred cCCCCCCCCCCCCCCCCCccccCccccCCCcHHHHHHHH-HHHHHhchHHHHHHHHcCcEEEEeCCCCcccHHHHHHHHh
Q 022951 198 KGENGNPGMYMGPLLPPPHCASKLITRSDDKEEVVRERL-RIYNEKSRPVEEFYRRRGKLLEFDLPGGIPESWPKLLQAL 276 (289)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~L~~r~~d~~~~~~~rl-~~y~~~~~~l~~~y~~~~~l~~id~~~~~~ev~~~i~~~l 276 (289)
|.++ .+ +.+++ +.|.+. .+. ....++.||+++++++|.++|.+.|
T Consensus 144 --------------------------r~e~-~e-f~~rv~~~y~~l----a~~--~~~~~~~IDa~~~~eeV~~~I~~~i 189 (197)
T 3hjn_A 144 --------------------------RFEK-RE-FLERVREGYLVL----ARE--HPERIVVLDGKRSIEEIHRDVVREV 189 (197)
T ss_dssp --------------------------TTCC-HH-HHHHHHHHHHHH----HHH--CTTTEEEEETTSCHHHHHHHHHHHH
T ss_pred --------------------------cccc-HH-HHHHHHHHHHHH----HHh--CCCCEEEEcCCCCHHHHHHHHHHHH
Confidence 1111 22 33333 333332 111 2346999999999999999999999
Q ss_pred ccCC
Q 022951 277 NLED 280 (289)
Q Consensus 277 ~~~~ 280 (289)
....
T Consensus 190 ~~rl 193 (197)
T 3hjn_A 190 KRRW 193 (197)
T ss_dssp SCC-
T ss_pred HHHh
Confidence 8754
No 58
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=99.51 E-value=4.3e-13 Score=111.80 Aligned_cols=101 Identities=22% Similarity=0.333 Sum_probs=70.2
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhCCCeeehHHHHHHHHH---cCC-----ccCHHHHHHHHHHHHHcccccCCceEE
Q 022951 73 KHVQWVFLGCPGVGKGTYASRLSNLLGVPHIATGDLLDEIVS---QGK-----LVSDEIIINLLSKRLEAGEAKGEAGFI 144 (289)
Q Consensus 73 ~~~~Ivl~GppGsGKSTlak~La~~lg~~~i~~d~l~~~~l~---~g~-----~v~~~~~~~ll~~~l~~~~~~~~~g~I 144 (289)
++.+|+|+|+|||||||+++.|++.+|+.++++|+++++... .+. ....+.+...+...+.. .++|
T Consensus 10 ~~~~i~i~G~~GsGKst~~~~l~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------g~~v 83 (180)
T 3iij_A 10 LLPNILLTGTPGVGKTTLGKELASKSGLKYINVGDLAREEQLYDGYDEEYDCPILDEDRVVDELDNQMRE------GGVI 83 (180)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHTCEEEEETTTTEEEECHHHHHHHHHHHHHH------CCEE
T ss_pred cCCeEEEEeCCCCCHHHHHHHHHHHhCCeEEEHHHHHhhcchhhhhhhhhcCccCChHHHHHHHHHHHhc------CCEE
Confidence 346789999999999999999999999999999998854310 011 12334444445444433 2667
Q ss_pred EcCcccHHHHhhcCCCcEEEEEecCHHHHHHHHhccc
Q 022951 145 LDGFPRTEILEGVTDIDLVINLKLREEALLAKCLGRR 181 (289)
Q Consensus 145 ldg~p~~~~l~~~~~~d~vI~Ld~~~e~l~~Rl~~R~ 181 (289)
+|+.... .+.. ..++.+|||++|.+++.+|+.+|.
T Consensus 84 v~~~~~~-~~~~-~~~~~vi~L~~~~e~l~~R~~~r~ 118 (180)
T 3iij_A 84 VDYHGCD-FFPE-RWFHIVFVLRTDTNVLYERLETRG 118 (180)
T ss_dssp EECSCCT-TSCG-GGCSEEEEEECCHHHHHHHHHHTT
T ss_pred EEechhh-hcch-hcCCEEEEEECCHHHHHHHHHHcC
Confidence 7753322 1110 116899999999999999999884
No 59
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=99.49 E-value=3.4e-13 Score=115.96 Aligned_cols=152 Identities=16% Similarity=0.132 Sum_probs=91.7
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhCCCeeehHHHHHHHHHcCC-------------------ccCHHHHHH-------
Q 022951 73 KHVQWVFLGCPGVGKGTYASRLSNLLGVPHIATGDLLDEIVSQGK-------------------LVSDEIIIN------- 126 (289)
Q Consensus 73 ~~~~Ivl~GppGsGKSTlak~La~~lg~~~i~~d~l~~~~l~~g~-------------------~v~~~~~~~------- 126 (289)
++++|+|+|++||||||+++.|++ +|+++++.|++.+.....+. .+....+..
T Consensus 3 ~~~~I~i~G~~GSGKST~~~~L~~-lg~~~id~D~~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~~~~~~l~~~~f~~~~ 81 (218)
T 1vht_A 3 LRYIVALTGGIGSGKSTVANAFAD-LGINVIDADIIARQVVEPGAPALHAIADHFGANMIAADGTLQRRALRERIFANPE 81 (218)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH-TTCEEEEHHHHHHHTTSTTCTHHHHHHHHHCGGGBCTTSCBCHHHHHHHHHTCHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH-cCCEEEEccHHHHHHhcCChHHHHHHHHHhHHHHcCCCCCCCHHHHHHHHhCCHH
Confidence 358899999999999999999998 99999999988754321111 122211111
Q ss_pred -------HHHHHH----Hc-ccccCCceEEEcCcccH--HHHhhcCCCcEEEEEecCHHHHHHHHhcccccccCCCcccc
Q 022951 127 -------LLSKRL----EA-GEAKGEAGFILDGFPRT--EILEGVTDIDLVINLKLREEALLAKCLGRRICSECGGNYNV 192 (289)
Q Consensus 127 -------ll~~~l----~~-~~~~~~~g~Ildg~p~~--~~l~~~~~~d~vI~Ld~~~e~l~~Rl~~R~~~~~~g~~y~~ 192 (289)
++...+ .. .....+..+|+|+ +.. ..+.. .+|.+|||++|++++.+|+..|..
T Consensus 82 ~~~~l~~~~~p~v~~~~~~~~~~~~~~~vi~~~-~~l~~~~~~~--~~d~vi~l~~~~e~~~~Rl~~R~~---------- 148 (218)
T 1vht_A 82 EKNWLNALLHPLIQQETQHQIQQATSPYVLWVV-PLLVENSLYK--KANRVLVVDVSPETQLKRTMQRDD---------- 148 (218)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCCSSEEEEEC-TTTTTTTGGG--GCSEEEEEECCHHHHHHHHHHHHT----------
T ss_pred HHHHHHHhHCHHHHHHHHHHHHhcCCCEEEEEe-eeeeccCccc--cCCEEEEEECCHHHHHHHHHHcCC----------
Confidence 111111 00 0110123455555 322 11222 378999999999999999987731
Q ss_pred ccccccCCCCCCCCCCCCCCCCCccccCccccCCCcHHHHHHHHHHHHHhchHHHHHHHHcCcEEEEeCCCCcccHHHHH
Q 022951 193 ACIDIKGENGNPGMYMGPLLPPPHCASKLITRSDDKEEVVRERLRIYNEKSRPVEEFYRRRGKLLEFDLPGGIPESWPKL 272 (289)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~r~~d~~~~~~~rl~~y~~~~~~l~~~y~~~~~l~~id~~~~~~ev~~~i 272 (289)
.+.+.+.+++... . +...++.... +.||+++++++++.+|
T Consensus 149 ----------------------------------~~~~~~~~~~~~~---~-~~~~~~~~ad--~vId~~~~~~~~~~~I 188 (218)
T 1vht_A 149 ----------------------------------VTREHVEQILAAQ---A-TREARLAVAD--DVIDNNGAPDAIASDV 188 (218)
T ss_dssp ----------------------------------CCHHHHHHHHHHS---C-CHHHHHHHCS--EEEECSSCTTSHHHHH
T ss_pred ----------------------------------CCHHHHHHHHHhc---C-ChHHHHHhCC--EEEECCCCHHHHHHHH
Confidence 1134455555431 1 1222222222 5788888999999999
Q ss_pred HHHhcc
Q 022951 273 LQALNL 278 (289)
Q Consensus 273 ~~~l~~ 278 (289)
.+.+..
T Consensus 189 ~~~l~~ 194 (218)
T 1vht_A 189 ARLHAH 194 (218)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 988864
No 60
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=99.48 E-value=4.1e-13 Score=116.93 Aligned_cols=160 Identities=10% Similarity=0.053 Sum_probs=85.0
Q ss_pred CCCCCceEEEEEcCCCCCHHHHHHHHHHHhCC----Ceee---------hHHHHHHHHHcCCccCHHHHH--------HH
Q 022951 69 KGEGKHVQWVFLGCPGVGKGTYASRLSNLLGV----PHIA---------TGDLLDEIVSQGKLVSDEIII--------NL 127 (289)
Q Consensus 69 ~~~~~~~~Ivl~GppGsGKSTlak~La~~lg~----~~i~---------~d~l~~~~l~~g~~v~~~~~~--------~l 127 (289)
+...++++|+|.|++||||||+++.|++.++. ..+. .++.+++++............ +.
T Consensus 16 ~~~~~~~~i~~~G~~g~GKst~~~~l~~~l~~~~g~~v~~~treP~~t~~g~~ir~~l~~~~~~~~~~e~llf~a~R~~~ 95 (223)
T 3ld9_A 16 TQGPGSMFITFEGIDGSGKTTQSHLLAEYLSEIYGVNNVVLTREPGGTLLNESVRNLLFKAQGLDSLSELLFFIAMRREH 95 (223)
T ss_dssp ---CCCEEEEEECSTTSSHHHHHHHHHHHHHHHHCGGGEEEEESSCSSHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHH
T ss_pred ccCCCCeEEEEECCCCCCHHHHHHHHHHHHhhccCceeeEeeeCCCCChHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHH
Confidence 34456789999999999999999999998754 2222 355566666643223332211 11
Q ss_pred HHHHHHcccccCCceEEEcCcccH-------------HHHhhc------CCCcEEEEEecCHHHHHHHHhcccccccCCC
Q 022951 128 LSKRLEAGEAKGEAGFILDGFPRT-------------EILEGV------TDIDLVINLKLREEALLAKCLGRRICSECGG 188 (289)
Q Consensus 128 l~~~l~~~~~~~~~g~Ildg~p~~-------------~~l~~~------~~~d~vI~Ld~~~e~l~~Rl~~R~~~~~~g~ 188 (289)
+.+.+...... +..+|+|.|..+ +.+..+ ..||++||||+|+++.++|+ +|.
T Consensus 96 ~~~~I~paL~~-g~~VI~DRy~~S~~Ayq~~~~g~~~~~~~~l~~~~~~~~PDl~I~Ldv~~e~~~~Ri-~rd------- 166 (223)
T 3ld9_A 96 FVKIIKPSLMQ-KKIVICDRFIDSTIAYQGYGQGIDCSLIDQLNDLVIDVYPDITFIIDVDINESLSRS-CKN------- 166 (223)
T ss_dssp HHHTHHHHHHT-TCEEEEESCHHHHHHHHTTTTCCCHHHHHHHHHHHCSSCCSEEEEEECC-------------------
T ss_pred HHHHHHHHHhc-CCeEEEccchhhHHHhccccCCccHHHHHHHHHHhhcCCCCeEEEEeCCHHHHHHHh-ccC-------
Confidence 11111111111 457888986554 111111 36999999999999999998 331
Q ss_pred ccccccccccCCCCCCCCCCCCCCCCCccccCccccCCCcHHHHHHHHHHHHHhchHHHHHHHHcCcEEEEeCCCCcccH
Q 022951 189 NYNVACIDIKGENGNPGMYMGPLLPPPHCASKLITRSDDKEEVVRERLRIYNEKSRPVEEFYRRRGKLLEFDLPGGIPES 268 (289)
Q Consensus 189 ~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~r~~d~~~~~~~rl~~y~~~~~~l~~~y~~~~~l~~id~~~~~~ev 268 (289)
|.+.....+.+|+...... +.+.| ...++.||++++++++
T Consensus 167 -----------------------------------r~E~~~~e~~~rv~~~y~~---la~~~--~~~~~vIDa~~sieeV 206 (223)
T 3ld9_A 167 -----------------------------------GYEFADMEFYYRVRDGFYD---IAKKN--PHRCHVITDKSETYDI 206 (223)
T ss_dssp ----------------------------------------CHHHHHHHHHHHHH---HHHHC--TTTEEEEESSCSSSCC
T ss_pred -----------------------------------ccccchHHHHHHHHHHHHH---HHHHC--CCCEEEEcCCCCHHHH
Confidence 1111112333444332222 22222 2469999999999999
Q ss_pred HHHHHHHhcc
Q 022951 269 WPKLLQALNL 278 (289)
Q Consensus 269 ~~~i~~~l~~ 278 (289)
++|.+.|..
T Consensus 207 -~~I~~~l~~ 215 (223)
T 3ld9_A 207 -DDINFVHLE 215 (223)
T ss_dssp -CHHHHHHHH
T ss_pred -HHHHHHHHH
Confidence 999888754
No 61
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=99.48 E-value=1.1e-13 Score=124.72 Aligned_cols=151 Identities=17% Similarity=0.148 Sum_probs=93.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHh-CCCeeehHHHHHHHHH--cCC--ccCH---HHHHHHHHHHHHcccc--cCCceEE
Q 022951 75 VQWVFLGCPGVGKGTYASRLSNLL-GVPHIATGDLLDEIVS--QGK--LVSD---EIIINLLSKRLEAGEA--KGEAGFI 144 (289)
Q Consensus 75 ~~Ivl~GppGsGKSTlak~La~~l-g~~~i~~d~l~~~~l~--~g~--~v~~---~~~~~ll~~~l~~~~~--~~~~g~I 144 (289)
++|+|+|+|||||||+++.|++++ |+.+++.|.+...... .|. .... ......+...+..... ..+.++|
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~~~~~~~~i~~D~~r~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~vi 82 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIAKNPGFYNINRDDYRQSIMAHEERDEYKYTKKKEGIVTGMQFDTAKSILYGGDSVKGVI 82 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHSTTEEEECHHHHHHHHTTSCCCC---CCHHHHHHHHHHHHHHHHHHTTSCTTCCEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHhCCCcEEecccHHHHHhccCCcccccccchhhhhHHHHHHHHHHHHHHhhccCCCEEE
Confidence 679999999999999999999985 8999999866544322 121 1221 1122222222222110 1256899
Q ss_pred EcCcccH----HHHhh----cCCCcEEEEEecCHHHHHHHHhcccccccCCCccccccccccCCCCCCCCCCCCCCCCCc
Q 022951 145 LDGFPRT----EILEG----VTDIDLVINLKLREEALLAKCLGRRICSECGGNYNVACIDIKGENGNPGMYMGPLLPPPH 216 (289)
Q Consensus 145 ldg~p~~----~~l~~----~~~~d~vI~Ld~~~e~l~~Rl~~R~~~~~~g~~y~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (289)
+|+++.. +.+.. ...+..+|||++|.+++++|+.+|..+
T Consensus 83 ~d~~~~~~~~~~~l~~~~~~~~~~~~~i~l~~~~e~~~~R~~~R~~~--------------------------------- 129 (301)
T 1ltq_A 83 ISDTNLNPERRLAWETFAKEYGWKVEHKVFDVPWTELVKRNSKRGTK--------------------------------- 129 (301)
T ss_dssp ECSCCCCHHHHHHHHHHHHHTTCEEEEEECCCCHHHHHHHHHHCGGG---------------------------------
T ss_pred EeCCCCCHHHHHHHHHHHHHcCCcEEEEEEECCHHHHHHHHHhccCC---------------------------------
Confidence 9996644 22322 223458999999999999999988532
Q ss_pred cccCccccCCCcHHHHHHHHHHHHHhchHHHHH-HHH-cCcEEEEeCCCCcccH
Q 022951 217 CASKLITRSDDKEEVVRERLRIYNEKSRPVEEF-YRR-RGKLLEFDLPGGIPES 268 (289)
Q Consensus 217 ~~~~L~~r~~d~~~~~~~rl~~y~~~~~~l~~~-y~~-~~~l~~id~~~~~~ev 268 (289)
....+.++++++.|+...... .| ++. ....+.+|.+++++++
T Consensus 130 ---------~~~~e~i~~~~~~~~~~~~~~-~~~~~~~~~~~i~iD~dgtl~~~ 173 (301)
T 1ltq_A 130 ---------AVPIDVLRSMYKSMREYLGLP-VYNGTPGKPKAVIFDVDGTLAKM 173 (301)
T ss_dssp ---------CCCHHHHHHHHHHHHHHHTCC-CCCCCTTSCEEEEEETBTTTBCC
T ss_pred ---------CCCHHHHHHHHHHHhcccCCc-ceeccccccceEEEeCCCCcccc
Confidence 233678888888887653210 00 011 1246678888776554
No 62
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=99.47 E-value=4.3e-13 Score=111.66 Aligned_cols=154 Identities=13% Similarity=0.034 Sum_probs=88.6
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhCCCee-eh---HHHHHHHHHcCCccC---H---HHHHHHHHHHHHcccccCCce
Q 022951 73 KHVQWVFLGCPGVGKGTYASRLSNLLGVPHI-AT---GDLLDEIVSQGKLVS---D---EIIINLLSKRLEAGEAKGEAG 142 (289)
Q Consensus 73 ~~~~Ivl~GppGsGKSTlak~La~~lg~~~i-~~---d~l~~~~l~~g~~v~---~---~~~~~ll~~~l~~~~~~~~~g 142 (289)
++++|+|+|+|||||||+|+.|++.++.+++ +. ++.+.+++..|.... . +...+.+...+... +..
T Consensus 4 ~~~~I~l~G~~GsGKST~a~~La~~l~~~~i~d~~~~g~~i~~~~~~g~~~~~~~~~~~~~~~~~i~~~l~~~----g~~ 79 (183)
T 2vli_A 4 RSPIIWINGPFGVGKTHTAHTLHERLPGSFVFEPEEMGQALRKLTPGFSGDPQEHPMWIPLMLDALQYASREA----AGP 79 (183)
T ss_dssp -CCEEEEECCC----CHHHHHHHHHSTTCEECCTHHHHHHHHHTSTTCCSCGGGSTTHHHHHHHHHHHHHHHC----SSC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhcCCCEEEchhhhHHHHHHhCccccchhhhhHHHHHHHHHHHHHHHHhC----CCc
Confidence 4678999999999999999999999999998 53 223334333332110 0 22334444444321 345
Q ss_pred EEEcCcccH--------HHHhhcCCCcEEEEEecCHHHHHHHHhcccccccCCCccccccccccCCCCCCCCCCCCCCCC
Q 022951 143 FILDGFPRT--------EILEGVTDIDLVINLKLREEALLAKCLGRRICSECGGNYNVACIDIKGENGNPGMYMGPLLPP 214 (289)
Q Consensus 143 ~Ildg~p~~--------~~l~~~~~~d~vI~Ld~~~e~l~~Rl~~R~~~~~~g~~y~~~~~~~~~~~~~~~~~~~~~~~~ 214 (289)
+|+|+.... +.+......-.+|||++|++++.+|+..|..+
T Consensus 80 vi~d~~~~~~~~~~~~~~~l~~~~~~~~~i~l~~~~e~~~~R~~~R~~r------------------------------- 128 (183)
T 2vli_A 80 LIVPVSISDTARHRRLMSGLKDRGLSVHHFTLIAPLNVVLERLRRDGQP------------------------------- 128 (183)
T ss_dssp EEEEECCCCHHHHHHHHHHHHHTTCCCEEEEEECCHHHHHHHHHTC----------------------------------
T ss_pred EEEeeeccCHHHHHHHHHHHHhcCCceEEEEEeCCHHHHHHHHHhcccc-------------------------------
Confidence 778863311 22222212235699999999999999988411
Q ss_pred CccccCccccCCCcHHHHHHHHHHHHHhchHHHHHHHHcCcEEEEeCC-CCcccHHHHHHHHhccCCcch
Q 022951 215 PHCASKLITRSDDKEEVVRERLRIYNEKSRPVEEFYRRRGKLLEFDLP-GGIPESWPKLLQALNLEDPED 283 (289)
Q Consensus 215 ~~~~~~L~~r~~d~~~~~~~rl~~y~~~~~~l~~~y~~~~~l~~id~~-~~~~ev~~~i~~~l~~~~~~~ 283 (289)
+ ...+.++. +.+...++ . | . + .||++ .++++++++|.+.+......+
T Consensus 129 ----------~-~~~~~~~~----~~~~~~~~-~-~---~-~-~Id~~~~~~~~~~~~I~~~l~~~~~~~ 176 (183)
T 2vli_A 129 ----------Q-VNVGTVED----RLNELRGE-Q-F---Q-T-HIDTAGLGTQQVAEQIAAQVGLTLAPP 176 (183)
T ss_dssp ------------CCHHHHHH----HHHHHTSG-G-G---C-S-EEECTTCCHHHHHHHHHHHHTCCCCCC
T ss_pred ----------c-hhHHHHHH----HHHhhccc-c-c---c-e-EeeCCCCCHHHHHHHHHHHHHHhcCCC
Confidence 1 11233333 33332222 2 2 2 3 88987 899999999999998765433
No 63
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=99.47 E-value=4.5e-13 Score=118.67 Aligned_cols=163 Identities=17% Similarity=0.107 Sum_probs=95.4
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHHHhCCCeeehHHHHHHHHHcCCcc-----------CHHHHHHHHHHHHHcccccCCce
Q 022951 74 HVQWVFLGCPGVGKGTYASRLSNLLGVPHIATGDLLDEIVSQGKLV-----------SDEIIINLLSKRLEAGEAKGEAG 142 (289)
Q Consensus 74 ~~~Ivl~GppGsGKSTlak~La~~lg~~~i~~d~l~~~~l~~g~~v-----------~~~~~~~ll~~~l~~~~~~~~~g 142 (289)
..+|+|+|++||||||+++.|++.+|+.++++|++++... .|..+ ..+.....+....... ...
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~~lg~~~~d~d~~~~~~~-~g~~i~~i~~~~ge~~fr~~e~~~l~~l~~~~----~~~ 122 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMARSLGYTFFDCDTLIEQAM-KGTSVAEIFEHFGESVFREKETEALKKLSLMY----HQV 122 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHHHHTCEEEEHHHHHHHHS-TTSCHHHHHHHHCHHHHHHHHHHHHHHHHHHC----SSE
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcCCcEEeCcHHHHHHh-cCccHHHHHHHhCcHHHHHHHHHHHHHHHhhc----CCc
Confidence 4579999999999999999999999999999999885543 12221 1111222222222110 235
Q ss_pred EEEcC--cccH-HHHhhcCCCcEEEEEecCHHHHHHHHhcccccccCCCccccccccccCCCCCCCCCCCCCCCCCcccc
Q 022951 143 FILDG--FPRT-EILEGVTDIDLVINLKLREEALLAKCLGRRICSECGGNYNVACIDIKGENGNPGMYMGPLLPPPHCAS 219 (289)
Q Consensus 143 ~Ildg--~p~~-~~l~~~~~~d~vI~Ld~~~e~l~~Rl~~R~~~~~~g~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (289)
+|.+| .+.. +.+..+. .+++|||++|.+++.+|+.+|.... .
T Consensus 123 Via~GgG~v~~~~~~~~l~-~~~vV~L~a~~e~l~~Rl~~~~~~~----------------------------------R 167 (250)
T 3nwj_A 123 VVSTGGGAVIRPINWKYMH-KGISIWLDVPLEALAHRIAAVGTGS----------------------------------R 167 (250)
T ss_dssp EEECCGGGGGSHHHHHHHT-TSEEEEEECCHHHHHHHHHC----------------------------------------
T ss_pred EEecCCCeecCHHHHHHHh-CCcEEEEECCHHHHHHHHhhcCCCC----------------------------------C
Confidence 66655 3332 3343333 4899999999999999998642110 0
Q ss_pred Cccc--cCCCcHHHHHHHHHHHHHhchHHHHHHHHcCcEEEE----------eC-CCCcccHHHHHHHHhccC
Q 022951 220 KLIT--RSDDKEEVVRERLRIYNEKSRPVEEFYRRRGKLLEF----------DL-PGGIPESWPKLLQALNLE 279 (289)
Q Consensus 220 ~L~~--r~~d~~~~~~~rl~~y~~~~~~l~~~y~~~~~l~~i----------d~-~~~~~ev~~~i~~~l~~~ 279 (289)
+|.. +++|..+...+++....+...+ +|.....++.+ |. ..++++++.+|.+.+...
T Consensus 168 pl~~~~~~~d~~~~~~~~l~~l~~eR~~---lY~~ad~vi~~~~~~~~~~~iDTs~~s~eev~~~I~~~i~~~ 237 (250)
T 3nwj_A 168 PLLHDDESGDTYTAALNRLSTIWDARGE---AYTKASARVSLENITLKLGYRSVSDLTPAEIAIEAFEQVQSY 237 (250)
T ss_dssp ----------CHHHHHHHHHHHHHHHHH---HHTTSSEEEEHHHHHHHHTCSSGGGCCHHHHHHHHHHHHHHH
T ss_pred CcccCCCcccchhhHHHHHHHHHHHHHH---HHhhCCEEEEecccccccccccCCCCCHHHHHHHHHHHHHHH
Confidence 1111 2233333334445544444443 46554444433 43 468999999999888654
No 64
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=99.47 E-value=8.5e-13 Score=111.54 Aligned_cols=156 Identities=17% Similarity=0.097 Sum_probs=94.5
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHHHHhCCCeeehHHHHHHHHHcC---------------CccCHHHHHH---------
Q 022951 71 EGKHVQWVFLGCPGVGKGTYASRLSNLLGVPHIATGDLLDEIVSQG---------------KLVSDEIIIN--------- 126 (289)
Q Consensus 71 ~~~~~~Ivl~GppGsGKSTlak~La~~lg~~~i~~d~l~~~~l~~g---------------~~v~~~~~~~--------- 126 (289)
..++++|+|+|++||||||+++.|++. |+++++.|++++... .+ ..+....+..
T Consensus 5 ~~~~~~I~i~G~~GsGKST~~~~La~~-g~~~id~d~~~~~~~-~~~~~~i~~~~~~~~~~g~i~~~~l~~~~~~~~~~~ 82 (203)
T 1uf9_A 5 AKHPIIIGITGNIGSGKSTVAALLRSW-GYPVLDLDALAARAR-ENKEEELKRLFPEAVVGGRLDRRALARLVFSDPERL 82 (203)
T ss_dssp -CCCEEEEEEECTTSCHHHHHHHHHHT-TCCEEEHHHHHHHHH-HHTHHHHHHHCGGGEETTEECHHHHHHHHTTSHHHH
T ss_pred ccCceEEEEECCCCCCHHHHHHHHHHC-CCEEEcccHHHHHhc-CChHHHHHHHHHHHHhCCCcCHHHHHHHHhCCHHHH
Confidence 345789999999999999999999998 999999999875443 11 1122222111
Q ss_pred -HHH---------HHHHcccccCCceEEEcCcccH-HHHhhcCCCcEEEEEecCHHHHHHHHhcccccccCCCccccccc
Q 022951 127 -LLS---------KRLEAGEAKGEAGFILDGFPRT-EILEGVTDIDLVINLKLREEALLAKCLGRRICSECGGNYNVACI 195 (289)
Q Consensus 127 -ll~---------~~l~~~~~~~~~g~Ildg~p~~-~~l~~~~~~d~vI~Ld~~~e~l~~Rl~~R~~~~~~g~~y~~~~~ 195 (289)
.+. ..+......++..+|+|+.... ..+.. .+|.+|||++|.+.+.+|+..|..
T Consensus 83 ~~l~~~~~~~i~~~~i~~~~~~g~~~vi~d~~~l~~~~~~~--~~d~~i~l~~~~e~~~~R~~~R~~------------- 147 (203)
T 1uf9_A 83 KALEAVVHPEVRRLLMEELSRLEAPLVFLEIPLLFEKGWEG--RLHGTLLVAAPLEERVRRVMARSG------------- 147 (203)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCCCSEEEEECTTTTTTTCGG--GSSEEEEECCCHHHHHHHHHTTTC-------------
T ss_pred HHHHHHhChHHHHHHHHHhhhcCCCEEEEEecceeccCchh--hCCEEEEEECCHHHHHHHHHHcCC-------------
Confidence 111 1111111111357888872211 11211 268999999999999999987731
Q ss_pred cccCCCCCCCCCCCCCCCCCccccCccccCCCcHHHHHHHHHHHHHhchHHHHHHHHcCcEEEEeCCCCcccHHHHHHHH
Q 022951 196 DIKGENGNPGMYMGPLLPPPHCASKLITRSDDKEEVVRERLRIYNEKSRPVEEFYRRRGKLLEFDLPGGIPESWPKLLQA 275 (289)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~r~~d~~~~~~~rl~~y~~~~~~l~~~y~~~~~l~~id~~~~~~ev~~~i~~~ 275 (289)
.+.+.+..++.. ... ...++... . +.||+++++++++.+|.+.
T Consensus 148 -------------------------------~~~~~~~~~i~~---~~~-~~~~~~~a-d-~vId~~~~~~~~~~~i~~~ 190 (203)
T 1uf9_A 148 -------------------------------LSREEVLARERA---QMP-EEEKRKRA-T-WVLENTGSLEDLERALKAV 190 (203)
T ss_dssp -------------------------------CTTHHHHHHHTT---SCC-HHHHHHHC-S-EEECCSSHHHHHHHHHHHH
T ss_pred -------------------------------CCHHHHHHHHHH---CCC-hhHHHHhC-C-EEEECCCCHHHHHHHHHHH
Confidence 011233333332 111 12222222 2 4689888999999999999
Q ss_pred hccCC
Q 022951 276 LNLED 280 (289)
Q Consensus 276 l~~~~ 280 (289)
+..-.
T Consensus 191 ~~~~~ 195 (203)
T 1uf9_A 191 LAELT 195 (203)
T ss_dssp HHSCC
T ss_pred HHHHH
Confidence 86543
No 65
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=99.45 E-value=3.2e-13 Score=114.73 Aligned_cols=152 Identities=18% Similarity=0.199 Sum_probs=93.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhCCCeeehHHHHHHHHHc------------CCc-------cCHHHHH----------
Q 022951 75 VQWVFLGCPGVGKGTYASRLSNLLGVPHIATGDLLDEIVSQ------------GKL-------VSDEIII---------- 125 (289)
Q Consensus 75 ~~Ivl~GppGsGKSTlak~La~~lg~~~i~~d~l~~~~l~~------------g~~-------v~~~~~~---------- 125 (289)
++|+|+|++||||||+++.|++ +|+++++.|+++++.+.. |+. +....+.
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~-~g~~~i~~d~~~~~~~~~~~~~~~~i~~~~g~~~~~~~g~~~r~~l~~~~f~~~~~~ 80 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE-LGAYVLDADKLIHSFYRKGHPVYEEVVKTFGKGILDEEGNIDRKKLADIVFKDEEKL 80 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH-TTCEEEEHHHHHHGGGSSSSHHHHHHHHHHCTTTTEETTEECHHHHHHTTSSCHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH-CCCEEEEccHHHHHHhcCCHHHHHHHHHHhCHHhhCCCCcCCHHHHHHHHhCCHHHH
Confidence 5799999999999999999999 999999999987543211 111 1111111
Q ss_pred ----HHHHHHHHc----c--cccCCceEEEcCcccH-HHHhhcCCCcEEEEEecCHHHHHHHHhcccccccCCCcccccc
Q 022951 126 ----NLLSKRLEA----G--EAKGEAGFILDGFPRT-EILEGVTDIDLVINLKLREEALLAKCLGRRICSECGGNYNVAC 194 (289)
Q Consensus 126 ----~ll~~~l~~----~--~~~~~~g~Ildg~p~~-~~l~~~~~~d~vI~Ld~~~e~l~~Rl~~R~~~~~~g~~y~~~~ 194 (289)
.+....+.. . ...++..+|+|+.... ..+..+ ++.+|||++|.+++.+|+..|..
T Consensus 81 ~~l~~l~~~~v~~~~~~~~~~~~~~~~vive~~~l~~~~~~~~--~~~~i~l~~~~e~~~~Rl~~R~~------------ 146 (204)
T 2if2_A 81 RKLEEITHRALYKEIEKITKNLSEDTLFILEASLLVEKGTYKN--YDKLIVVYAPYEVCKERAIKRGM------------ 146 (204)
T ss_dssp HHHHHHHHHHHTTTHHHHHHHSCTTCCEEEECSCSTTTTCGGG--SSEEEEECCCHHHHHHHHHHTCC------------
T ss_pred HHHHHhhCHHHHHHHHHHHHhccCCCEEEEEccccccCCchhh--CCEEEEEECCHHHHHHHHHHcCC------------
Confidence 011011110 0 0110157889883222 222222 68999999999999999987721
Q ss_pred ccccCCCCCCCCCCCCCCCCCccccCccccCCCcHHHHHHHHHHHHHhchHHHHHHHHcCcEEEEeCCCCcccHHHHHHH
Q 022951 195 IDIKGENGNPGMYMGPLLPPPHCASKLITRSDDKEEVVRERLRIYNEKSRPVEEFYRRRGKLLEFDLPGGIPESWPKLLQ 274 (289)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~L~~r~~d~~~~~~~rl~~y~~~~~~l~~~y~~~~~l~~id~~~~~~ev~~~i~~ 274 (289)
+.+.+.+++... .. ...++. ... +.||+++++++++.+|.+
T Consensus 147 ---------------------------------~~~~~~~~~~~~---~~-~~~~~~-~ad-~vId~~~~~~~~~~~i~~ 187 (204)
T 2if2_A 147 ---------------------------------SEEDFERRWKKQ---MP-IEEKVK-YAD-YVIDNSGSIEETYKQVKK 187 (204)
T ss_dssp ---------------------------------CHHHHHHHHTTS---CC-HHHHGG-GCS-EECCCSSCHHHHHHHHHH
T ss_pred ---------------------------------CHHHHHHHHHhC---CC-hhHHHh-cCC-EEEECCCCHHHHHHHHHH
Confidence 123344444332 11 222332 223 568888999999999999
Q ss_pred HhccCC
Q 022951 275 ALNLED 280 (289)
Q Consensus 275 ~l~~~~ 280 (289)
.+....
T Consensus 188 ~l~~~~ 193 (204)
T 2if2_A 188 VYEELT 193 (204)
T ss_dssp HHHTTC
T ss_pred HHHHHh
Confidence 986544
No 66
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=99.43 E-value=1.7e-12 Score=110.04 Aligned_cols=37 Identities=30% Similarity=0.407 Sum_probs=34.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCeeehHHHHHHH
Q 022951 76 QWVFLGCPGVGKGTYASRLSNLLGVPHIATGDLLDEI 112 (289)
Q Consensus 76 ~Ivl~GppGsGKSTlak~La~~lg~~~i~~d~l~~~~ 112 (289)
+|.|+|++||||||+++.|++.+|+++++.|++.+..
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~lg~~~~d~d~~~~~~ 40 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAALGVPYLSSGLLYRAA 40 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHTCCEEEHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCceeccchHHHhh
Confidence 7899999999999999999999999999999988543
No 67
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=99.43 E-value=4.4e-13 Score=114.34 Aligned_cols=159 Identities=18% Similarity=0.156 Sum_probs=98.0
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHHh-CCCeeehHHHHHHH--H---HcCCc-------cCHHHHHHHHHHHHHccc---
Q 022951 73 KHVQWVFLGCPGVGKGTYASRLSNLL-GVPHIATGDLLDEI--V---SQGKL-------VSDEIIINLLSKRLEAGE--- 136 (289)
Q Consensus 73 ~~~~Ivl~GppGsGKSTlak~La~~l-g~~~i~~d~l~~~~--l---~~g~~-------v~~~~~~~ll~~~l~~~~--- 136 (289)
++.+|+|+|++||||||+++.|++.+ ++.+++.|+++... + ..+.. +....+...+...+....
T Consensus 20 ~~~~i~i~G~~GsGKSTl~~~L~~~~~~~~~i~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~l~~~~~~~ 99 (207)
T 2qt1_A 20 KTFIIGISGVTNSGKTTLAKNLQKHLPNCSVISQDDFFKPESEIETDKNGFLQYDVLEALNMEKMMSAISCWMESARHSV 99 (207)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHTTSTTEEEEEGGGGBCCGGGSCBCTTSCBCCSSGGGBCHHHHHHHHHHHHHHHTTSS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhcCCcEEEeCCccccCHhHhhccccCCChhHHHHHhHHHHHHHHHHHHHhCCCCCC
Confidence 45789999999999999999999988 89999998876211 0 01100 112233333333222110
Q ss_pred -------ccCCceEEEcCcccH--HHHhhcCCCcEEEEEecCHHHHHHHHhcccccccCCCccccccccccCCCCCCCCC
Q 022951 137 -------AKGEAGFILDGFPRT--EILEGVTDIDLVINLKLREEALLAKCLGRRICSECGGNYNVACIDIKGENGNPGMY 207 (289)
Q Consensus 137 -------~~~~~g~Ildg~p~~--~~l~~~~~~d~vI~Ld~~~e~l~~Rl~~R~~~~~~g~~y~~~~~~~~~~~~~~~~~ 207 (289)
......+|+||++.. +.+. ..+|.+|||+++.+.+.+|+..|....
T Consensus 100 ~~~~~~~~~~~~~vi~eg~~~~~~~~~~--~~~d~~i~l~~~~~~~~~R~~~R~~~~----------------------- 154 (207)
T 2qt1_A 100 VSTDQESAEEIPILIIEGFLLFNYKPLD--TIWNRSYFLTIPYEECKRRRSTRVYQP----------------------- 154 (207)
T ss_dssp CCC-----CCCCEEEEECTTCTTCGGGT--TTCSEEEEEECCHHHHHHHHHHSCCSS-----------------------
T ss_pred cCCCeeecCCCCEEEEeehHHcCcHHHH--HhcCeeEEEECCHHHHHHHHHHcCCCc-----------------------
Confidence 001357899996543 1222 247999999999999999998774210
Q ss_pred CCCCCCCCccccCccccCCCcHHHHH-HHHHHHHHhchHHHHHHHHc-CcEEEEeCCCCcccHHHHHHHHhcc
Q 022951 208 MGPLLPPPHCASKLITRSDDKEEVVR-ERLRIYNEKSRPVEEFYRRR-GKLLEFDLPGGIPESWPKLLQALNL 278 (289)
Q Consensus 208 ~~~~~~~~~~~~~L~~r~~d~~~~~~-~rl~~y~~~~~~l~~~y~~~-~~l~~id~~~~~~ev~~~i~~~l~~ 278 (289)
++..+.+. .....|. ...++|... +.++.||+++++++++++|.+.|..
T Consensus 155 ------------------e~~~~~~~~~~~~~~~----~~~~~~~~~~~~v~~Id~~~~~eev~~~I~~~l~~ 205 (207)
T 2qt1_A 155 ------------------PDSPGYFDGHVWPMYL----KYRQEMQDITWEVVYLDGTKSEEDLFLQVYEDLIQ 205 (207)
T ss_dssp ------------------CCCTTHHHHTHHHHHH----HHHHHGGGCSSCCEEEETTSCHHHHHHHHHHHHTT
T ss_pred ------------------cchHHHHHHHHhHHHH----HHHHHHHhcCCeEEEecCCCCHHHHHHHHHHHHHh
Confidence 11111222 1122222 223334433 5678899999999999999999864
No 68
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=99.42 E-value=9.9e-13 Score=114.78 Aligned_cols=40 Identities=25% Similarity=0.306 Sum_probs=36.4
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHHHhCCCeeehHHHHHH
Q 022951 72 GKHVQWVFLGCPGVGKGTYASRLSNLLGVPHIATGDLLDE 111 (289)
Q Consensus 72 ~~~~~Ivl~GppGsGKSTlak~La~~lg~~~i~~d~l~~~ 111 (289)
.++.+|+|+|++||||||+++.|++.+|+++++.|++++.
T Consensus 14 ~~~~~i~i~G~~gsGKst~~~~l~~~lg~~~~d~d~~~~~ 53 (236)
T 1q3t_A 14 MKTIQIAIDGPASSGKSTVAKIIAKDFGFTYLDTGAMYRA 53 (236)
T ss_dssp CCCCEEEEECSSCSSHHHHHHHHHHHHCCEEEEHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHcCCceecCCCeeEc
Confidence 3567899999999999999999999999999999999854
No 69
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=99.41 E-value=3.1e-13 Score=119.26 Aligned_cols=108 Identities=14% Similarity=0.240 Sum_probs=71.7
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHHHhCCC----------eeehHHHHHH-------HHHcCCcc-------CHHHHHHH
Q 022951 72 GKHVQWVFLGCPGVGKGTYASRLSNLLGVP----------HIATGDLLDE-------IVSQGKLV-------SDEIIINL 127 (289)
Q Consensus 72 ~~~~~Ivl~GppGsGKSTlak~La~~lg~~----------~i~~d~l~~~-------~l~~g~~v-------~~~~~~~l 127 (289)
.++++|+|+|++||||||+|+.|++.+|++ ++++|++++. ....|... ..+.+.+.
T Consensus 20 ~~~~iI~I~G~~GSGKST~a~~L~~~lg~~~~d~~~~~~~~i~~D~~~~~~~~~~~~~~~~g~~~f~~~~~~d~~~l~~~ 99 (252)
T 1uj2_A 20 GEPFLIGVSGGTASGKSSVCAKIVQLLGQNEVDYRQKQVVILSQDSFYRVLTSEQKAKALKGQFNFDHPDAFDNELILKT 99 (252)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHTTGGGSCGGGCSEEEEEGGGGBCCCCHHHHHHHHTTCSCTTSGGGBCHHHHHHH
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHhhhhcccccCCceEEEecCccccccChhhhhhhccCCCCCCCcchhhHHHHHHH
Confidence 456889999999999999999999999987 7999988731 11223222 22223444
Q ss_pred HHHHHHcc-------------------cccCCceEEEcCcccH--HHHhhcCCCcEEEEEecCHHHHHHHHhccc
Q 022951 128 LSKRLEAG-------------------EAKGEAGFILDGFPRT--EILEGVTDIDLVINLKLREEALLAKCLGRR 181 (289)
Q Consensus 128 l~~~l~~~-------------------~~~~~~g~Ildg~p~~--~~l~~~~~~d~vI~Ld~~~e~l~~Rl~~R~ 181 (289)
+....... .......||+||.+.. ..+... +|.+|||+++.+++++|+..|.
T Consensus 100 L~~l~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~vIveG~~~~~~~~~~~~--~d~vi~l~~~~e~~~~R~~~R~ 172 (252)
T 1uj2_A 100 LKEITEGKTVQIPVYDFVSHSRKEETVTVYPADVVLFEGILAFYSQEVRDL--FQMKLFVDTDADTRLSRRVLRD 172 (252)
T ss_dssp HHHHHTTCCEEEEEEETTTTEEEEEEEEECCCSEEEEECTTTTSSHHHHHH--CSEEEEEECCHHHHHHHHHHHH
T ss_pred HHHHHcCCeeecCccccccccCCCceeeeCCCcEEEEeeeccccCHHHHHh--cCeeEEEeCCHHHHHHHHHHHH
Confidence 44432100 0011458999995432 223332 5899999999999999998774
No 70
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=99.41 E-value=2.2e-12 Score=106.49 Aligned_cols=156 Identities=16% Similarity=0.172 Sum_probs=83.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhCCCeeehHHHHHHHHHcCCccCH-------HHHHHHHHHHHHcccccCCceEEEc-
Q 022951 75 VQWVFLGCPGVGKGTYASRLSNLLGVPHIATGDLLDEIVSQGKLVSD-------EIIINLLSKRLEAGEAKGEAGFILD- 146 (289)
Q Consensus 75 ~~Ivl~GppGsGKSTlak~La~~lg~~~i~~d~l~~~~l~~g~~v~~-------~~~~~ll~~~l~~~~~~~~~g~Ild- 146 (289)
++|+|+|++||||||+++.|++.++..+++.|++++... +..+.. ..+...-...+..... ..++|+.
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~l~~~~id~d~~~~~~~--~~~i~~i~~~~g~~~~~~~~~~~l~~l~~--~~~~v~~~ 80 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQLNMEFYDSDQEIEKRT--GADVGWVFDLEGEEGFRDREEKVINELTE--KQGIVLAT 80 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHTTCEEEEHHHHHHHHH--TSCHHHHHHHHHHHHHHHHHHHHHHHHHT--SSSEEEEC
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCCCEEeccHHHHHHh--CcCHHHHHHHHhHHHHHHHHHHHHHHHHh--CCCeEEEC
Confidence 579999999999999999999999999999998875432 222111 0010000011111111 1245553
Q ss_pred --CcccH-HHHhhcCCCcEEEEEecCHHHHHHHHhcccccccCCCccccccccccCCCCCCCCCCCCCCCCCccccCccc
Q 022951 147 --GFPRT-EILEGVTDIDLVINLKLREEALLAKCLGRRICSECGGNYNVACIDIKGENGNPGMYMGPLLPPPHCASKLIT 223 (289)
Q Consensus 147 --g~p~~-~~l~~~~~~d~vI~Ld~~~e~l~~Rl~~R~~~~~~g~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ 223 (289)
|.+.. ...+.+...++++||+++++.+.+|+..|..++ +..
T Consensus 81 ~~~~~~~~~~~~~l~~~~~~i~l~~~~~~l~~R~~~r~~r~------------------------------------~~~ 124 (173)
T 1kag_A 81 GGGSVKSRETRNRLSARGVVVYLETTIEKQLARTQRDKKRP------------------------------------LLH 124 (173)
T ss_dssp CTTGGGSHHHHHHHHHHSEEEECCCCHHHHHSCC------C------------------------------------CSS
T ss_pred CCeEEecHHHHHHHHhCCEEEEEeCCHHHHHHHHhCCCCCC------------------------------------CCC
Confidence 23222 222212224789999999999999998774211 011
Q ss_pred cCCCcHHHHHHHHHHHHHhchHHHHHHHHcCcEEEEeCC-CCcccHHHHHHHHhcc
Q 022951 224 RSDDKEEVVRERLRIYNEKSRPVEEFYRRRGKLLEFDLP-GGIPESWPKLLQALNL 278 (289)
Q Consensus 224 r~~d~~~~~~~rl~~y~~~~~~l~~~y~~~~~l~~id~~-~~~~ev~~~i~~~l~~ 278 (289)
..+...+.++..+... . .+|.... .+.||++ .++++++.+|.+.+..
T Consensus 125 ~~~~~~~~~~~~~~~r----~---~~~~~~a-~~~id~~~~~~~~~~~~i~~~l~~ 172 (173)
T 1kag_A 125 VETPPREVLEALANER----N---PLYEEIA-DVTIRTDDQSAKVVANQIIHMLES 172 (173)
T ss_dssp SSCCCHHHHHHHHHHH----H---HHHHHHC-SEEC-----CHHHHHHHHHHHHC-
T ss_pred CCCchHHHHHHHHHHH----H---HHHHhhC-CEEEECCCCCHHHHHHHHHHHHHh
Confidence 1111144444333221 1 2343323 3678877 7999999999998853
No 71
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=99.37 E-value=6.5e-12 Score=108.82 Aligned_cols=161 Identities=17% Similarity=0.122 Sum_probs=97.3
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhCCCee---------ehHHHHHHHHHcCC-ccCHHHHHHHH--------HHHHHc
Q 022951 73 KHVQWVFLGCPGVGKGTYASRLSNLLGVPHI---------ATGDLLDEIVSQGK-LVSDEIIINLL--------SKRLEA 134 (289)
Q Consensus 73 ~~~~Ivl~GppGsGKSTlak~La~~lg~~~i---------~~d~l~~~~l~~g~-~v~~~~~~~ll--------~~~l~~ 134 (289)
+.++|+|.|++||||||+++.|++.++.... ..++.+++++.... ...... ..++ .+.+..
T Consensus 4 ~g~~i~~eG~~g~GKst~~~~l~~~l~~~~~~~~ep~~~t~~g~~ir~~l~~~~~~~~~~~-~~llf~a~R~~~~~~I~p 82 (216)
T 3tmk_A 4 RGKLILIEGLDRTGKTTQCNILYKKLQPNCKLLKFPERSTRIGGLINEYLTDDSFQLSDQA-IHLLFSANRWEIVDKIKK 82 (216)
T ss_dssp CCCEEEEEECSSSSHHHHHHHHHHHHCSSEEEEESSCTTSHHHHHHHHHHHCTTSCCCHHH-HHHHHHHHHHTTHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhcccceEEEecCCCChHHHHHHHHHHhcccCCCHHH-HHHHHHHHHHHHHHHHHH
Confidence 4679999999999999999999999975221 12444677776543 232221 1111 011111
Q ss_pred ccccCCceEEEcCcccH---------------HHHhh----cCCCcEEEEE-ecCHHHHHHHHhcccccccCCCcccccc
Q 022951 135 GEAKGEAGFILDGFPRT---------------EILEG----VTDIDLVINL-KLREEALLAKCLGRRICSECGGNYNVAC 194 (289)
Q Consensus 135 ~~~~~~~g~Ildg~p~~---------------~~l~~----~~~~d~vI~L-d~~~e~l~~Rl~~R~~~~~~g~~y~~~~ 194 (289)
.... +..||+|.|..+ +.+.. ...||++||| |+|+++.++|+..|. +
T Consensus 83 aL~~-g~~VI~DRy~~S~~ayq~~~~l~~~~~~~l~~~~~~~~~PDlti~L~dv~pe~~~~R~~~~~-d----------- 149 (216)
T 3tmk_A 83 DLLE-GKNIVMDRYVYSGVAYSAAKGTNGMDLDWCLQPDVGLLKPDLTLFLSTQDVDNNAEKSGFGD-E----------- 149 (216)
T ss_dssp HHHT-TCEEEEESCHHHHHHHHHTTCCTTCCHHHHHGGGTTSBCCSEEEEEECSCCSCGGGCCSSSC-C-----------
T ss_pred HHHc-CCEEEEeccHhHHHHHHHhcCCCHHHHHHHHHHhhCCCCCCEEEEEeCCCHHHHHHHhccCc-c-----------
Confidence 1111 457888986555 11221 2359999999 999999888764321 0
Q ss_pred ccccCCCCCCCCCCCCCCCCCccccCccccCCCcHHHHHHHHHHHHHh-chHHHHHHHHcCcEEEEe-CCCCcccHHHHH
Q 022951 195 IDIKGENGNPGMYMGPLLPPPHCASKLITRSDDKEEVVRERLRIYNEK-SRPVEEFYRRRGKLLEFD-LPGGIPESWPKL 272 (289)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~L~~r~~d~~~~~~~rl~~y~~~-~~~l~~~y~~~~~l~~id-~~~~~~ev~~~i 272 (289)
|.+. ..+.+|+...+.. ...... + ....++.|| +++++++|.++|
T Consensus 150 -----------------------------r~E~--~~f~~rvr~~Y~~la~~~~~-~-~~~~~~vID~a~~s~eeV~~~I 196 (216)
T 3tmk_A 150 -----------------------------RYET--VKFQEKVKQTFMKLLDKEIR-K-GDESITIVDVTNKGIQEVEALI 196 (216)
T ss_dssp -----------------------------TTCC--HHHHHHHHHHHHHHHHHHHH-T-TCCSEEEEECTTCCHHHHHHHH
T ss_pred -----------------------------cccH--HHHHHHHHHHHHHHHHhccc-c-CCCCEEEEeCCCCCHHHHHHHH
Confidence 1121 2455555443333 221111 1 246799999 999999999999
Q ss_pred HHHhccCC
Q 022951 273 LQALNLED 280 (289)
Q Consensus 273 ~~~l~~~~ 280 (289)
.++|....
T Consensus 197 ~~~i~~~l 204 (216)
T 3tmk_A 197 WQIVEPVL 204 (216)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99887544
No 72
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=99.36 E-value=3.7e-12 Score=109.27 Aligned_cols=38 Identities=24% Similarity=0.345 Sum_probs=35.4
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHHHhCCCeeehHHHHHH
Q 022951 74 HVQWVFLGCPGVGKGTYASRLSNLLGVPHIATGDLLDE 111 (289)
Q Consensus 74 ~~~Ivl~GppGsGKSTlak~La~~lg~~~i~~d~l~~~ 111 (289)
+++|+|+|++||||||+++.|++.+|+++++.|++++.
T Consensus 3 ~~~i~i~G~~gsGkst~~~~l~~~~g~~~~~~d~~~~~ 40 (219)
T 2h92_A 3 AINIALDGPAAAGKSTIAKRVASELSMIYVDTGAMYRA 40 (219)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHTTCEEEEHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcCCceecCChHHHH
Confidence 46899999999999999999999999999999999864
No 73
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=99.35 E-value=2.4e-13 Score=120.59 Aligned_cols=83 Identities=12% Similarity=0.134 Sum_probs=53.1
Q ss_pred CCcEEEEEecCHHHHHHHHhcccccccCCCccccccccccCCCCCCCCCCCCCCCCCccccCccccCCCcHHHHHHHHHH
Q 022951 159 DIDLVINLKLREEALLAKCLGRRICSECGGNYNVACIDIKGENGNPGMYMGPLLPPPHCASKLITRSDDKEEVVRERLRI 238 (289)
Q Consensus 159 ~~d~vI~Ld~~~e~l~~Rl~~R~~~~~~g~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~r~~d~~~~~~~rl~~ 238 (289)
.||++|||++|++++++|+.+|... ++. ....+..+.+..+++.
T Consensus 174 ~pd~vi~L~~~~e~~~~Ri~~R~r~------~~~------------------------------~~~~~~~~~l~~~~~~ 217 (263)
T 1p5z_B 174 ELDGIIYLQATPETCLHRIYLRGRN------EEQ------------------------------GIPLEYLEKLHYKHES 217 (263)
T ss_dssp CCSEEEEEECCHHHHHHHHHHHCCG------GGT------------------------------TCCHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCHHHHHHHHHhcCCc------ccc------------------------------CccHHHHHHHHHHHHH
Confidence 5899999999999999999877421 110 0112223444445554
Q ss_pred HHHh--chHHHHHHHHcCcEEEEeCCCCcccHHHHHHHHhcc
Q 022951 239 YNEK--SRPVEEFYRRRGKLLEFDLPGGIPESWPKLLQALNL 278 (289)
Q Consensus 239 y~~~--~~~l~~~y~~~~~l~~id~~~~~~ev~~~i~~~l~~ 278 (289)
|.+. ..+...+|.+ +.++.||+++++++++++|.+.|..
T Consensus 218 ~~~~~~v~~~y~~~~~-~~~~~Id~~~~~eev~~~I~~~l~~ 258 (263)
T 1p5z_B 218 WLLHRTLKTNFDYLQE-VPILTLDVNEDFKDKYESLVEKVKE 258 (263)
T ss_dssp HHTTCCCCCSCGGGGG-SCEEEEECCSCHHHHHHHHHHHHHH
T ss_pred HHhhccchhhhhhhcc-CCEEEEECCCCHHHHHHHHHHHHHH
Confidence 4331 1111122223 4589999999999999999998854
No 74
>4i1u_A Dephospho-COA kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.05A {Burkholderia vietnamiensis} PDB: 4i1v_A*
Probab=99.34 E-value=2.1e-11 Score=105.11 Aligned_cols=150 Identities=12% Similarity=-0.003 Sum_probs=96.8
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhCCCeeehHHHHHHHHHcCC-------------------ccCHHH----------
Q 022951 73 KHVQWVFLGCPGVGKGTYASRLSNLLGVPHIATGDLLDEIVSQGK-------------------LVSDEI---------- 123 (289)
Q Consensus 73 ~~~~Ivl~GppGsGKSTlak~La~~lg~~~i~~d~l~~~~l~~g~-------------------~v~~~~---------- 123 (289)
.+.-|.|+|.+||||||+++.|++ +|+++++.|.+.++.+..|. .+....
T Consensus 8 ~~~~iglTGgigsGKStv~~~l~~-~g~~vidaD~ia~~l~~~~~~~~~~i~~~fG~~~~~~dg~ldR~~L~~~vF~d~~ 86 (210)
T 4i1u_A 8 HMYAIGLTGGIGSGKTTVADLFAA-RGASLVDTDLIAHRITAPAGLAMPAIEQTFGPAFVAADGSLDRARMRALIFSDED 86 (210)
T ss_dssp SCCEEEEECCTTSCHHHHHHHHHH-TTCEEEEHHHHHHHHTSTTCTTHHHHHHHHCGGGBCTTSSBCHHHHHHHHHHCHH
T ss_pred ceeEEEEECCCCCCHHHHHHHHHH-CCCcEEECcHHHHHHhcCCcHHHHHHHHHhChhhcCCCCCCcHHHHHHHHhCCHH
Confidence 456789999999999999999998 99999999998855443322 111111
Q ss_pred ------------HHHHHHHHHHcccccCCceEEEcCcccH--HHHhhcCCCcEEEEEecCHHHHHHHHhcccccccCCCc
Q 022951 124 ------------IINLLSKRLEAGEAKGEAGFILDGFPRT--EILEGVTDIDLVINLKLREEALLAKCLGRRICSECGGN 189 (289)
Q Consensus 124 ------------~~~ll~~~l~~~~~~~~~g~Ildg~p~~--~~l~~~~~~d~vI~Ld~~~e~l~~Rl~~R~~~~~~g~~ 189 (289)
+.+.+...+... ...-+|+|.-... ..+..+ +|.+|++++|+++.++|+.+|.
T Consensus 87 ~~~~L~~i~HP~I~~~~~~~~~~~---~~~~vv~d~pLL~E~~~~~~~--~D~vi~V~ap~e~r~~Rl~~Rd-------- 153 (210)
T 4i1u_A 87 ARRRLEAITHPLIRAETEREARDA---QGPYVIFVVPLLVESRNWKAR--CDRVLVVDCPVDTQIARVMQRN-------- 153 (210)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTC---CSSSEEEECTTCTTCHHHHHH--CSEEEEEECCHHHHHHHHHHHH--------
T ss_pred HHHHHHHHhhHHHHHHHHHHHHhc---CCCEEEEEEecccccCCcccc--CCeEEEEECCHHHHHHHHHhcC--------
Confidence 111122222221 1335778761111 123333 6999999999999999999884
Q ss_pred cccccccccCCCCCCCCCCCCCCCCCccccCccccCCCcHHHHHHHHHHHHHhchHHHHHHHHcCcEEEEeCC-CCcccH
Q 022951 190 YNVACIDIKGENGNPGMYMGPLLPPPHCASKLITRSDDKEEVVRERLRIYNEKSRPVEEFYRRRGKLLEFDLP-GGIPES 268 (289)
Q Consensus 190 y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~r~~d~~~~~~~rl~~y~~~~~~l~~~y~~~~~l~~id~~-~~~~ev 268 (289)
..+.+.+..|++. ++ +....+.. .. +.||++ ++++++
T Consensus 154 ------------------------------------g~s~eea~~ri~~---Q~-~~eek~~~-AD-~VIdN~~gsle~l 191 (210)
T 4i1u_A 154 ------------------------------------GFTREQVEAIIAR---QA-TREARLAA-AD-DVIVNDAATPDAL 191 (210)
T ss_dssp ------------------------------------CCCHHHHHHHHHH---SC-CHHHHHHT-CS-EEEECSSCCHHHH
T ss_pred ------------------------------------CCCHHHHHHHHHH---cC-ChHHHHHh-CC-EEEECCCCCHHHH
Confidence 1235666666653 22 22333332 22 467888 899999
Q ss_pred HHHHHHHhcc
Q 022951 269 WPKLLQALNL 278 (289)
Q Consensus 269 ~~~i~~~l~~ 278 (289)
..+|..++..
T Consensus 192 ~~qV~~l~~~ 201 (210)
T 4i1u_A 192 AVQVDALHQR 201 (210)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999888754
No 75
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=99.32 E-value=2.4e-11 Score=107.33 Aligned_cols=39 Identities=23% Similarity=0.270 Sum_probs=35.8
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhCCCeeehHHHHHH
Q 022951 73 KHVQWVFLGCPGVGKGTYASRLSNLLGVPHIATGDLLDE 111 (289)
Q Consensus 73 ~~~~Ivl~GppGsGKSTlak~La~~lg~~~i~~d~l~~~ 111 (289)
+..+|.|+||+||||||+++.|+++||+.+++.|.+++.
T Consensus 26 ~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~~d~g~i~r~ 64 (252)
T 4e22_A 26 IAPVITVDGPSGAGKGTLCKALAESLNWRLLDSGAIYRV 64 (252)
T ss_dssp TSCEEEEECCTTSSHHHHHHHHHHHTTCEEEEHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhcCCCcCCCCceehH
Confidence 457899999999999999999999999999999999844
No 76
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=99.29 E-value=8.1e-12 Score=104.68 Aligned_cols=105 Identities=23% Similarity=0.154 Sum_probs=62.1
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHHHhC-----CCeeehHHHHHHHHHcCCccCHHHHHHHHHH---HHHcccccCCceE
Q 022951 72 GKHVQWVFLGCPGVGKGTYASRLSNLLG-----VPHIATGDLLDEIVSQGKLVSDEIIINLLSK---RLEAGEAKGEAGF 143 (289)
Q Consensus 72 ~~~~~Ivl~GppGsGKSTlak~La~~lg-----~~~i~~d~l~~~~l~~g~~v~~~~~~~ll~~---~l~~~~~~~~~g~ 143 (289)
.++++|+|+|+|||||||+++.|++.++ +.+++.|.+. ..+..+...........+.. ........ +..+
T Consensus 11 ~~~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~~~~~d~~~-~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~-g~~v 88 (186)
T 2yvu_A 11 EKGIVVWLTGLPGSGKTTIATRLADLLQKEGYRVEVLDGDWAR-TTVSEGAGFTREERLRHLKRIAWIARLLARN-GVIV 88 (186)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHH-TTTTTTCCCCHHHHHHHHHHHHHHHHHHHTT-TCEE
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEeeHHHHH-HHHhhccCCChhhHHHHHHHHHHHHHHHHhC-CCEE
Confidence 3568999999999999999999999884 3566776553 32222222222221111111 11100111 3356
Q ss_pred EEcCccc-H---HH----HhhcCCCcEEEEEecCHHHHHHHHh
Q 022951 144 ILDGFPR-T---EI----LEGVTDIDLVINLKLREEALLAKCL 178 (289)
Q Consensus 144 Ildg~p~-~---~~----l~~~~~~d~vI~Ld~~~e~l~~Rl~ 178 (289)
|+|++.. . +. +.....++++|||++|++++.+|+.
T Consensus 89 i~d~~~~~~~~r~~~~~~~~~~~~~~~~v~L~~~~e~~~~R~~ 131 (186)
T 2yvu_A 89 ICSFVSPYKQARNMVRRIVEEEGIPFLEIYVKASLEEVIRRDP 131 (186)
T ss_dssp EEECCCCCHHHHHHHHHHHHHTTCCEEEEEEECCHHHHHHHCH
T ss_pred EEeCccccHHHHHHHHHHhhccCCCeEEEEEeCCHHHHHHhhh
Confidence 6777432 1 22 2222247899999999999999975
No 77
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=99.29 E-value=1.7e-11 Score=101.48 Aligned_cols=107 Identities=15% Similarity=0.113 Sum_probs=64.0
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHHHhCCCee--ehHHHHHHHHHc------CCcc-------CHHHHHH---HHHHHHHcc
Q 022951 74 HVQWVFLGCPGVGKGTYASRLSNLLGVPHI--ATGDLLDEIVSQ------GKLV-------SDEIIIN---LLSKRLEAG 135 (289)
Q Consensus 74 ~~~Ivl~GppGsGKSTlak~La~~lg~~~i--~~d~l~~~~l~~------g~~v-------~~~~~~~---ll~~~l~~~ 135 (289)
+++|+|+|+|||||||+++.|++.++..++ +.|+++...... |..+ ..+.+.. .+...+...
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~l~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSVLPEPWLAFGVDSLIEAMPLKMQSAEGGIEFDADGGVSIGPEFRALEGAWAEGVVAM 82 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSSSCEEEEEHHHHHHHSCGGGGTSTTSEEECTTSCEEECHHHHHHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcCCCeEEeccchHhhhcchhhccchhhccccCCCccccchhHHHHHHHHHHHHHHH
Confidence 368999999999999999999999987665 577776422110 1000 0111111 111112211
Q ss_pred cccCCceEEEcCcc-c-H----HHHhhcCC-CcEEEEEecCHHHHHHHHhccc
Q 022951 136 EAKGEAGFILDGFP-R-T----EILEGVTD-IDLVINLKLREEALLAKCLGRR 181 (289)
Q Consensus 136 ~~~~~~g~Ildg~p-~-~----~~l~~~~~-~d~vI~Ld~~~e~l~~Rl~~R~ 181 (289)
... +..+|+|+.. . . +..+.+.. +.++|||++|.+++.+|+.+|.
T Consensus 83 ~~~-g~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~e~l~~R~~~r~ 134 (178)
T 1qhx_A 83 ARA-GARIIIDDVFLGGAAAQERWRSFVGDLDVLWVGVRCDGAVAEGRETARG 134 (178)
T ss_dssp HHT-TCEEEEEECCTTTHHHHHHHHHHHTTCCEEEEEEECCHHHHHHHHHHTS
T ss_pred Hhc-CCeEEEEeccccChHHHHHHHHHhcCCcEEEEEEECCHHHHHHHHHhhC
Confidence 111 3478999832 1 1 22222322 3468999999999999998874
No 78
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=99.29 E-value=1.3e-10 Score=99.41 Aligned_cols=104 Identities=15% Similarity=0.150 Sum_probs=64.0
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHHHhCCCeeehHHHHHHHHHc-----------CCccCH----------------HHHHH
Q 022951 74 HVQWVFLGCPGVGKGTYASRLSNLLGVPHIATGDLLDEIVSQ-----------GKLVSD----------------EIIIN 126 (289)
Q Consensus 74 ~~~Ivl~GppGsGKSTlak~La~~lg~~~i~~d~l~~~~l~~-----------g~~v~~----------------~~~~~ 126 (289)
.++|.|.|++||||||+++.||+++|+++++ ++++...... ++..+. +.+..
T Consensus 6 ~~iI~i~g~~GsGk~ti~~~la~~lg~~~~D-~~~~~~~a~~~g~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (201)
T 3fdi_A 6 QIIIAIGREFGSGGHLVAKKLAEHYNIPLYS-KELLDEVAKDGRYSKEVLERFDEKPMNFAFIPVPAGGTTISLEQDIAI 84 (201)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHTTCCEEC-HHHHHHTTCC---------------------------------CHHHH
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHHhCcCEEC-HHHHHHHHHhcCCCHHHHHHHhhhchhHHHHHhccccccccccHHHHH
Confidence 4689999999999999999999999999999 7777332111 111110 00001
Q ss_pred HHHHHHHcccc-cCCceEEEcCcccHHHHhhcCCCcEEEEEecCHHHHHHHHhcc
Q 022951 127 LLSKRLEAGEA-KGEAGFILDGFPRTEILEGVTDIDLVINLKLREEALLAKCLGR 180 (289)
Q Consensus 127 ll~~~l~~~~~-~~~~g~Ildg~p~~~~l~~~~~~d~vI~Ld~~~e~l~~Rl~~R 180 (289)
.....+..... . ..++|++|-...-.+... ...+.|||++|.+.+.+|+.++
T Consensus 85 ~~~~~i~~la~~~-~~~~Vi~Gr~g~~vl~~~-~~~~~V~L~A~~e~r~~R~~~~ 137 (201)
T 3fdi_A 85 RQFNFIRKKANEE-KESFVIVGRCAEEILSDN-PNMISAFILGDKDTKTKRVMER 137 (201)
T ss_dssp HHHHHHHHHHHTS-CCCEEEESTTHHHHTTTC-TTEEEEEEEECHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhc-CCCEEEEECCcchhcCCC-CCeEEEEEECCHHHHHHHHHHH
Confidence 12222222210 1 347888874332222221 2368999999999999999865
No 79
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=99.28 E-value=2.6e-12 Score=110.12 Aligned_cols=102 Identities=11% Similarity=-0.004 Sum_probs=61.5
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhC------CCeeehHHHHHHHHHcCCccCHHHHH---HHHHHHHHcccccCCceE
Q 022951 73 KHVQWVFLGCPGVGKGTYASRLSNLLG------VPHIATGDLLDEIVSQGKLVSDEIII---NLLSKRLEAGEAKGEAGF 143 (289)
Q Consensus 73 ~~~~Ivl~GppGsGKSTlak~La~~lg------~~~i~~d~l~~~~l~~g~~v~~~~~~---~ll~~~l~~~~~~~~~g~ 143 (289)
++++|+|+|++||||||+++.|++.++ +.+++.|.+. ..+..+......... ..+...+...... +..+
T Consensus 24 ~~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~~d~~r-~~l~~~~~~~~~~r~~~~~~~~~~~~~~l~~-g~~V 101 (211)
T 1m7g_A 24 RGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDNIR-FGLNKDLGFSEADRNENIRRIAEVAKLFADS-NSIA 101 (211)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHHHT-TTTTTTCCSSHHHHHHHHHHHHHHHHHHHHT-TCEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEECChHHh-hhhccccCCCHHHHHHHHHHHHHHHHHHHHC-CCEE
Confidence 467899999999999999999999886 7778876554 222222222211111 1111111111111 3578
Q ss_pred EEcCccc----H-HHHhh----------cCCCcEEEEEecCHHHHHHHH
Q 022951 144 ILDGFPR----T-EILEG----------VTDIDLVINLKLREEALLAKC 177 (289)
Q Consensus 144 Ildg~p~----~-~~l~~----------~~~~d~vI~Ld~~~e~l~~Rl 177 (289)
|+| |.. . +.+.. ...++++|||++|++++.+|+
T Consensus 102 I~d-~~~~~~~~~~~l~~l~~~~~~~~~~~~p~~vi~Ld~~~e~~~~R~ 149 (211)
T 1m7g_A 102 ITS-FISPYRKDRDTARQLHEVATPGEETGLPFVEVYVDVPVEVAEQRD 149 (211)
T ss_dssp EEE-CCCCCHHHHHHHHHHHHCCCTTCSCCCCEEEEEEECCHHHHHTSC
T ss_pred EEe-cCCccHHHHHHHHHHhhhcccccccCCCeEEEEEeCCHHHHHHhh
Confidence 888 332 1 22222 124689999999999999885
No 80
>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}
Probab=99.23 E-value=5e-10 Score=97.35 Aligned_cols=104 Identities=14% Similarity=0.148 Sum_probs=63.5
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhCCCeeehHHHHHHHHHc-----------CCccC---------------------
Q 022951 73 KHVQWVFLGCPGVGKGTYASRLSNLLGVPHIATGDLLDEIVSQ-----------GKLVS--------------------- 120 (289)
Q Consensus 73 ~~~~Ivl~GppGsGKSTlak~La~~lg~~~i~~d~l~~~~l~~-----------g~~v~--------------------- 120 (289)
+.++|.|.|++||||||+++.||+++|+++++. +++...... ++..+
T Consensus 13 ~~~iI~i~g~~gsGk~~i~~~la~~lg~~~~d~-~~~~~~a~~~g~~~~~~~~~~E~~~~~~~~~~~~~~~~~~~~~~~~ 91 (223)
T 3hdt_A 13 KNLIITIEREYGSGGRIVGKKLAEELGIHFYDD-DILKLASEKSAVGEQFFRLADEKAGNNLLYRLGGGRKIDLHSKPSP 91 (223)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHHHHTCEEECH-HHHHHHHHCC------------------------------------
T ss_pred CCeEEEEeCCCCCCHHHHHHHHHHHcCCcEEcH-HHHHHHHHHcCCCHHHHHHHHhhccccHHHHHhccccccccccccc
Confidence 357899999999999999999999999999994 555221110 11100
Q ss_pred ------HHHHHHHHHHHHHcccccCCceEEEcCcccHHHH---hhcCCCcEEEEEecCHHHHHHHHhcc
Q 022951 121 ------DEIIINLLSKRLEAGEAKGEAGFILDGFPRTEIL---EGVTDIDLVINLKLREEALLAKCLGR 180 (289)
Q Consensus 121 ------~~~~~~ll~~~l~~~~~~~~~g~Ildg~p~~~~l---~~~~~~d~vI~Ld~~~e~l~~Rl~~R 180 (289)
++.+.....+.+..... ..++|+.|..-...+ ... ...++|||++|.+.+.+|+.+|
T Consensus 92 ~~~~~~~~~~f~~~~~~i~~la~--~~~~Vi~Grggg~vl~~~~~~-~~~~~VfL~A~~e~r~~Ri~~~ 157 (223)
T 3hdt_A 92 NDKLTSPENLFKFQSEVMRELAE--SEPCIFVGRAAGYVLDQDEDI-ERLIRIFVYTDKVKKVQRVMEV 157 (223)
T ss_dssp ------HHHHHHHHHHHHHHHHH--HSCEEEESTTHHHHHHHCTTC-CEEEEEEEECCHHHHHHHHHHH
T ss_pred ccccccHHHHHHHHHHHHHHHHh--CCCEEEEeCCcchhcccccCC-CCeEEEEEECCHHHHHHHHHHh
Confidence 01111111222222211 236777764333333 221 2358999999999999999866
No 81
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=99.19 E-value=3.5e-10 Score=101.84 Aligned_cols=104 Identities=15% Similarity=0.160 Sum_probs=65.7
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHHh--CCCeeehHHHHH------HHHH-cCCcc---CHHH----HHHHHHHHHHccc
Q 022951 73 KHVQWVFLGCPGVGKGTYASRLSNLL--GVPHIATGDLLD------EIVS-QGKLV---SDEI----IINLLSKRLEAGE 136 (289)
Q Consensus 73 ~~~~Ivl~GppGsGKSTlak~La~~l--g~~~i~~d~l~~------~~l~-~g~~v---~~~~----~~~ll~~~l~~~~ 136 (289)
.+++|+|+|||||||||+++.|++.+ ++.+++.|.+.. .+.. -++.. .... ....+...+..
T Consensus 32 ~~~livl~G~sGsGKSTla~~L~~~~~~~~~~Is~D~~R~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~v~~~l~~-- 109 (287)
T 1gvn_B 32 SPTAFLLGGQPGSGKTSLRSAIFEETQGNVIVIDNDTFKQQHPNFDELVKLYEKDVVKHVTPYSNRMTEAIISRLSDQ-- 109 (287)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHHTTTCCEEECTHHHHTTSTTHHHHHHHHGGGCHHHHHHHHHHHHHHHHHHHHHH--
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCCeEEEechHhHHhchhhHHHHHHccchhhhhhhHHHHHHHHHHHHHHHhc--
Confidence 46789999999999999999999998 788999876641 1111 11111 0111 12223333322
Q ss_pred ccCCceEEEcCcccH-H---HH----hhcCCCcEEEEEecCHHHH----HHHHhccc
Q 022951 137 AKGEAGFILDGFPRT-E---IL----EGVTDIDLVINLKLREEAL----LAKCLGRR 181 (289)
Q Consensus 137 ~~~~~g~Ildg~p~~-~---~l----~~~~~~d~vI~Ld~~~e~l----~~Rl~~R~ 181 (289)
+..+|+|+.... . .+ .....+..+++|++|++.+ .+|+..|.
T Consensus 110 ---g~~vIld~~~~~~~~~~~~~~~~~~~g~~~~~i~~~~p~~~~~l~~~~Rl~~R~ 163 (287)
T 1gvn_B 110 ---GYNLVIEGTGRTTDVPIQTATMLQAKGYETKMYVMAVPKINSYLGTIERYETMY 163 (287)
T ss_dssp ---TCCEEECCCCCCSHHHHHHHHHHHTTTCEEEEEEECCCHHHHHHHHHHHHHHHH
T ss_pred ---CCeEEEECCCCCHHHHHHHHHHHHhCCCcEEEEEEECCHHHHHHHHHHHHHHHH
Confidence 458999985544 1 22 2212234579999999999 88887664
No 82
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=99.18 E-value=1.1e-10 Score=110.50 Aligned_cols=97 Identities=16% Similarity=0.093 Sum_probs=70.3
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHHHHhCCCeeehHHHHHHHHHcCCccCHHHHHHHHHHHHHcccccCCceEEEcCccc
Q 022951 71 EGKHVQWVFLGCPGVGKGTYASRLSNLLGVPHIATGDLLDEIVSQGKLVSDEIIINLLSKRLEAGEAKGEAGFILDGFPR 150 (289)
Q Consensus 71 ~~~~~~Ivl~GppGsGKSTlak~La~~lg~~~i~~d~l~~~~l~~g~~v~~~~~~~ll~~~l~~~~~~~~~g~Ildg~p~ 150 (289)
...+.+|+|+|+|||||||+|+.|++.+++.+++.|++- ........+...+.. +..+|+|+...
T Consensus 255 ~~~~~lIil~G~pGSGKSTla~~L~~~~~~~~i~~D~~~----------~~~~~~~~~~~~l~~-----g~~vIiD~~~~ 319 (416)
T 3zvl_A 255 SPNPEVVVAVGFPGAGKSTFIQEHLVSAGYVHVNRDTLG----------SWQRCVSSCQAALRQ-----GKRVVIDNTNP 319 (416)
T ss_dssp CSSCCEEEEESCTTSSHHHHHHHHTGGGTCEECCGGGSC----------SHHHHHHHHHHHHHT-----TCCEEEESCCC
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHhcCcEEEccchHH----------HHHHHHHHHHHHHhc-----CCcEEEeCCCC
Confidence 445688999999999999999999999999999997751 112223333333433 35799998544
Q ss_pred H--------HHHhhcCCCcEEEEEecCHHHHHHHHhcccc
Q 022951 151 T--------EILEGVTDIDLVINLKLREEALLAKCLGRRI 182 (289)
Q Consensus 151 ~--------~~l~~~~~~d~vI~Ld~~~e~l~~Rl~~R~~ 182 (289)
. +.+........+|||+++.+++++|+..|..
T Consensus 320 ~~~~r~~~~~~~~~~~~~~~~v~l~~~~e~l~~R~~~R~~ 359 (416)
T 3zvl_A 320 DVPSRARYIQCAKDAGVPCRCFNFCATIEQARHNNRFREM 359 (416)
T ss_dssp SHHHHHHHHHHHHHHTCCEEEEEECCCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCeEEEEEEeCCHHHHHHHHHhhcc
Confidence 3 1222333456799999999999999998864
No 83
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=99.16 E-value=7.9e-10 Score=96.71 Aligned_cols=39 Identities=23% Similarity=0.313 Sum_probs=35.4
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhCCCeeehHHHHHH
Q 022951 73 KHVQWVFLGCPGVGKGTYASRLSNLLGVPHIATGDLLDE 111 (289)
Q Consensus 73 ~~~~Ivl~GppGsGKSTlak~La~~lg~~~i~~d~l~~~ 111 (289)
++++|+|.||+||||||+++.|++.+|+.+++.|.+++.
T Consensus 8 ~~~~i~i~G~~GsGKsTla~~la~~lg~~~~d~g~~~r~ 46 (233)
T 3r20_A 8 GSLVVAVDGPAGTGKSSVSRGLARALGARYLDTGAMYRI 46 (233)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCCcccCCcHHHH
Confidence 467899999999999999999999999999999998743
No 84
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=99.16 E-value=1.7e-10 Score=98.02 Aligned_cols=104 Identities=21% Similarity=0.243 Sum_probs=65.6
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHHHhCCCeeehHHHHHHHHHc---------CCc------cCHHHH------------
Q 022951 72 GKHVQWVFLGCPGVGKGTYASRLSNLLGVPHIATGDLLDEIVSQ---------GKL------VSDEII------------ 124 (289)
Q Consensus 72 ~~~~~Ivl~GppGsGKSTlak~La~~lg~~~i~~d~l~~~~l~~---------g~~------v~~~~~------------ 124 (289)
...++|.|+|++||||||+++.|++.+|+++++.|++.++.+.. |+. +....+
T Consensus 10 ~~~~iIgltG~~GSGKSTva~~L~~~lg~~vid~D~~~~~~~~~~~~~i~~~fG~~~~~~g~ldr~~L~~~vF~~~~~~~ 89 (192)
T 2grj_A 10 HHHMVIGVTGKIGTGKSTVCEILKNKYGAHVVNVDRIGHEVLEEVKEKLVELFGGSVLEDGKVNRKKLAGIVFESRENLK 89 (192)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHHTHHHHHHHHCGGGBSSSSBCHHHHHHHHTTCHHHHH
T ss_pred ccceEEEEECCCCCCHHHHHHHHHHhcCCEEEECcHHHHHHHHHHHHHHHHHhChhhcCCCCcCHHHHHHHHhCCHHHHH
Confidence 35688999999999999999999999999999999998554431 221 111111
Q ss_pred --HHH----HHHHHHcccccCCceEEEcCcccH-HHHhhcCCCcEEEEEecCHHHHHHHH
Q 022951 125 --INL----LSKRLEAGEAKGEAGFILDGFPRT-EILEGVTDIDLVINLKLREEALLAKC 177 (289)
Q Consensus 125 --~~l----l~~~l~~~~~~~~~g~Ildg~p~~-~~l~~~~~~d~vI~Ld~~~e~l~~Rl 177 (289)
..+ +...+.......+..+|+|+-... ..+... .|.+||+++|.++.++|+
T Consensus 90 ~l~~i~hP~i~~~~~~~~~~~~~~vv~d~pll~e~~~~~~--~d~vi~v~a~~e~r~~Rl 147 (192)
T 2grj_A 90 KLELLVHPLMKKRVQEIINKTSGLIVIEAALLKRMGLDQL--CDHVITVVASRETILKRN 147 (192)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCCEEEEEECTTTTTTTGGGG--CSEEEEEECCHHHHHHHC
T ss_pred HHHhhhCHHHHHHHHHHHHHcCCEEEEEEeceeecChHHh--CCEEEEEECCHHHHHHHH
Confidence 111 111111100001236777762111 223332 689999999999999998
No 85
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=99.15 E-value=5.1e-11 Score=101.98 Aligned_cols=59 Identities=17% Similarity=0.204 Sum_probs=35.5
Q ss_pred cccCccccCCCcHHHHHHHHHHHHHhchHHHHHHHHcCcEEEEeCCCCcccHHHHHHHHhccCCcc
Q 022951 217 CASKLITRSDDKEEVVRERLRIYNEKSRPVEEFYRRRGKLLEFDLPGGIPESWPKLLQALNLEDPE 282 (289)
Q Consensus 217 ~~~~L~~r~~d~~~~~~~rl~~y~~~~~~l~~~y~~~~~l~~id~~~~~~ev~~~i~~~l~~~~~~ 282 (289)
+..||..|..++.+.+++|++.+.... .++. ...++.+|. ++++++.+|.++|..+..+
T Consensus 134 l~~Rl~~R~~~~~e~i~~Rl~~~~~e~----~~~~-~~d~vivN~--~~~~~~~~l~~~i~~~~~~ 192 (208)
T 3tau_A 134 LKNRIIGRGTESMEVVEERMETAKKEI----EMMA-SYDYAVVND--VVANAVQKIKGIVETEHLK 192 (208)
T ss_dssp SSCC-------CCHHHHHHHHHHHHHH----HHGG-GSSEEEECS--SHHHHHHHHHHHHHHHHTB
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHH----Hhhc-cCCEEEECc--CHHHHHHHHHHHHHHHHHh
Confidence 345555565666788999998876543 2222 334555653 6999999999999876543
No 86
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=99.14 E-value=1.3e-09 Score=92.12 Aligned_cols=149 Identities=14% Similarity=0.137 Sum_probs=87.8
Q ss_pred EEEEcCCCCCHHHHHHHHHHHhCC-Ceee---------------------hHHHHHHHHHcCCccCHHH--------HHH
Q 022951 77 WVFLGCPGVGKGTYASRLSNLLGV-PHIA---------------------TGDLLDEIVSQGKLVSDEI--------IIN 126 (289)
Q Consensus 77 Ivl~GppGsGKSTlak~La~~lg~-~~i~---------------------~d~l~~~~l~~g~~v~~~~--------~~~ 126 (289)
|+|+||+||||||+++.|.+.+.- ..++ ..+-.++++.+|..+.... ...
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~~~~~~~~svs~TTR~pR~gE~~G~dY~Fvs~~eF~~~i~~g~flE~~~~~g~~YGt~~~ 83 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAEYPDSFGFSVSSTTRTPRAGEVNGKDYNFVSVDEFKSMIKNNEFIEWAQFSGNYYGSTVA 83 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHHCTTTEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHTTCEEEEEEETTEEEEEEHH
T ss_pred EEEECCCCCCHHHHHHHHHHhCCCCeEEEEEEeccCCCCCCcCCceeEeecHHHHHHHHHcCCEEEEEEEcCceeeeecc
Confidence 789999999999999999887631 2222 1122234445444332110 111
Q ss_pred HHHHHHHcccccCCceEEEcCcccH-HHHhhcC--CCcEEEEEecCHHHHHHHHhcccccccCCCccccccccccCCCCC
Q 022951 127 LLSKRLEAGEAKGEAGFILDGFPRT-EILEGVT--DIDLVINLKLREEALLAKCLGRRICSECGGNYNVACIDIKGENGN 203 (289)
Q Consensus 127 ll~~~l~~~~~~~~~g~Ildg~p~~-~~l~~~~--~~d~vI~Ld~~~e~l~~Rl~~R~~~~~~g~~y~~~~~~~~~~~~~ 203 (289)
.+...+.. +..+|+|.-+.. ..++... .+..++.+..+.+.+.+||.+|.
T Consensus 84 ~v~~~l~~-----g~~vil~id~~g~~~~k~~~~~~~~~Ifi~pps~e~L~~RL~~Rg---------------------- 136 (186)
T 1ex7_A 84 SVKQVSKS-----GKTCILDIDMQGVKSVKAIPELNARFLFIAPPSVEDLKKRLEGRG---------------------- 136 (186)
T ss_dssp HHHHHHHH-----TSEEEEECCHHHHHHHHTCGGGCCEEEEEECSCHHHHHHHHHHHC----------------------
T ss_pred eeeehhhC-----CCEEEecCCHHHHHHHHHhcccCceEEEEeCCCHHHHHHHHHhcC----------------------
Confidence 22333332 346677654433 3444432 23334444556788888887774
Q ss_pred CCCCCCCCCCCCccccCccccCCCcHHHHHHHHHHHHHhchHHHHHHHHcCcEEEEeCCCCcccHHHHHHHHhccC
Q 022951 204 PGMYMGPLLPPPHCASKLITRSDDKEEVVRERLRIYNEKSRPVEEFYRRRGKLLEFDLPGGIPESWPKLLQALNLE 279 (289)
Q Consensus 204 ~~~~~~~~~~~~~~~~~L~~r~~d~~~~~~~rl~~y~~~~~~l~~~y~~~~~l~~id~~~~~~ev~~~i~~~l~~~ 279 (289)
.++++.+++||..+...+.. ++.....++.+| .++++.+.+|.++|..|
T Consensus 137 ----------------------~e~~e~i~~Rl~~a~~e~~~---~~~~~fD~vIvN--ddle~a~~~l~~iI~ae 185 (186)
T 1ex7_A 137 ----------------------TETEESINKRLSAAQAELAY---AETGAHDKVIVN--DDLDKAYKELKDFIFAE 185 (186)
T ss_dssp ----------------------CSCHHHHHHHHHHHHHHHHH---HTTTCSSEEEEC--SSHHHHHHHHHHHHTTC
T ss_pred ----------------------CCCHHHHHHHHHHHHHHHhh---ccccCCcEEEEC--cCHHHHHHHHHHHHHhc
Confidence 56688999999988765432 111122355555 37999999999999765
No 87
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=99.12 E-value=1.3e-10 Score=101.56 Aligned_cols=27 Identities=22% Similarity=0.238 Sum_probs=24.7
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhC
Q 022951 73 KHVQWVFLGCPGVGKGTYASRLSNLLG 99 (289)
Q Consensus 73 ~~~~Ivl~GppGsGKSTlak~La~~lg 99 (289)
++++|+|.|++||||||+++.|++.++
T Consensus 1 ~~~~i~~~G~~g~GKtt~~~~l~~~l~ 27 (241)
T 2ocp_A 1 GPRRLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 367899999999999999999999983
No 88
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=99.11 E-value=9.6e-11 Score=101.83 Aligned_cols=80 Identities=14% Similarity=0.010 Sum_probs=39.5
Q ss_pred CCCcEEEEEecCHHHHHHHHhcccccccCCCccccccccccCCCCCCCCCCCCCCCCCccccCccccCCCcHHHHHHHHH
Q 022951 158 TDIDLVINLKLREEALLAKCLGRRICSECGGNYNVACIDIKGENGNPGMYMGPLLPPPHCASKLITRSDDKEEVVRERLR 237 (289)
Q Consensus 158 ~~~d~vI~Ld~~~e~l~~Rl~~R~~~~~~g~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~r~~d~~~~~~~rl~ 237 (289)
..||++||||+|++++++|+.+|... .+ + .. ...+.+|+.
T Consensus 145 ~~pD~vi~Ld~~~e~~~~Ri~~R~r~------~e--------------------------------~-~~-~~~~~~rv~ 184 (230)
T 2vp4_A 145 VQADLIIYLRTSPEVAYERIRQRARS------EE--------------------------------S-CV-PLKYLQELH 184 (230)
T ss_dssp CCCSEEEEEECCHHHHHHHHHHHCCG------GG--------------------------------T-TC-CHHHHHHHH
T ss_pred CCCCEEEEEeCCHHHHHHHHHHcCCc------cc--------------------------------c-cC-cHHHHHHHH
Confidence 35999999999999999999877311 00 0 01 123555665
Q ss_pred HHHHhchHHHHHH-HHcCcEEEEeCCCCcccHHHHHHHHhccC
Q 022951 238 IYNEKSRPVEEFY-RRRGKLLEFDLPGGIPESWPKLLQALNLE 279 (289)
Q Consensus 238 ~y~~~~~~l~~~y-~~~~~l~~id~~~~~~ev~~~i~~~l~~~ 279 (289)
.+...+. ..|| ...+.++.||+++++++++++|.+++..-
T Consensus 185 ~~~~~~~--~~~~~~~~~~~~vId~~~~~eev~~~I~~~l~~~ 225 (230)
T 2vp4_A 185 ELHEDWL--IHQRRPQSCKVLVLDADLNLENIGTEYQRSESSI 225 (230)
T ss_dssp HHHHHHH--TSCCSSCCCEEEEEECCC----------------
T ss_pred HHHHHHH--HHhcccCCCCEEEEECCCCHHHHHHHHHHHHHHH
Confidence 5444321 1111 23456899999999999999999988653
No 89
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=99.10 E-value=1e-11 Score=105.75 Aligned_cols=106 Identities=20% Similarity=0.234 Sum_probs=63.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhCCCeee------------h-HHHHHHHHHc--CCccCHHHHHHHHH--------HH
Q 022951 75 VQWVFLGCPGVGKGTYASRLSNLLGVPHIA------------T-GDLLDEIVSQ--GKLVSDEIIINLLS--------KR 131 (289)
Q Consensus 75 ~~Ivl~GppGsGKSTlak~La~~lg~~~i~------------~-d~l~~~~l~~--g~~v~~~~~~~ll~--------~~ 131 (289)
++|+|+|++||||||+++.|++.++...++ . ++.++.++.. +....+.....++. ..
T Consensus 1 ~~I~i~G~~GsGKsTl~~~L~~~l~~~g~~v~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 80 (214)
T 1gtv_A 1 MLIAIEGVDGAGKRTLVEKLSGAFRAAGRSVATLAFPRYGQSVAADIAAEALHGEHGDLASSVYAMATLFALDRAGAVHT 80 (214)
T ss_dssp CEEEEEEEEEEEHHHHHHHHHHHHHEEEEEEEEEESSEEEEEEEEEEHHHHEEEEEEEEEEEHHHHHHHHHHHHHEEHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEeecCCCCcchhhHHHHHHcccccccCCCHhHHHHHHHHHHhhhHHH
Confidence 478999999999999999999998532221 1 2334343321 11111222111111 11
Q ss_pred HHcccccCCceEEEcCcccH------------------HHHhhc-------CCCcEEEEEecCHHHHHHHHhccc
Q 022951 132 LEAGEAKGEAGFILDGFPRT------------------EILEGV-------TDIDLVINLKLREEALLAKCLGRR 181 (289)
Q Consensus 132 l~~~~~~~~~g~Ildg~p~~------------------~~l~~~-------~~~d~vI~Ld~~~e~l~~Rl~~R~ 181 (289)
+...... +..+|+|+++.. +.+..+ ..+|.+|||++|++++.+|+.+|.
T Consensus 81 i~~~l~~-g~~vi~D~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~l~~~~~~~~~R~~~R~ 154 (214)
T 1gtv_A 81 IQGLCRG-YDVVILDRYVASNAAYSAARLHENAAGKAAAWVQRIEFARLGLPKPDWQVLLAVSAELAGERSRGRA 154 (214)
T ss_dssp HHHEEEE-EEEEEEEEEEHHHHHHHHHHEEEEEEEHHHHHHHHHHEEEEECCBCEEEEEEEEEHHHHHHHHHHHH
T ss_pred HHHHhhC-CCEEEECCCcccchhhhhcccCccccHHHHHHHHhcccccccCCCCCEEEEEeCCHHHHHHHHHccc
Confidence 2211111 457899997643 112221 258999999999999999999885
No 90
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=99.09 E-value=8.2e-11 Score=99.52 Aligned_cols=152 Identities=15% Similarity=0.175 Sum_probs=66.7
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHHh-CCCeeeh---------------------HHHHHHHHHcCCccCHH--------
Q 022951 73 KHVQWVFLGCPGVGKGTYASRLSNLL-GVPHIAT---------------------GDLLDEIVSQGKLVSDE-------- 122 (289)
Q Consensus 73 ~~~~Ivl~GppGsGKSTlak~La~~l-g~~~i~~---------------------d~l~~~~l~~g~~v~~~-------- 122 (289)
++.+|+|+||+||||||+++.|+..+ ....+.. .+.+..++..+..+...
T Consensus 5 ~g~~i~l~G~~GsGKSTl~~~L~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 84 (207)
T 2j41_A 5 KGLLIVLSGPSGVGKGTVRKRIFEDPSTSYKYSISMTTRQMREGEVDGVDYFFKTRDAFEALIKDDQFIEYAEYVGNYYG 84 (207)
T ss_dssp CCCEEEEECSTTSCHHHHHHHHHHCTTCCEECCCCEECSCCCTTCCBTTTBEECCHHHHHHHHHTTCEEEEEEETTEEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhhCCCeEEecccccCCCCCCccCCCceEEcCHHHHHHHHHcCCeEEEEeECCeecC
Confidence 45689999999999999999999877 2111111 11112222222211100
Q ss_pred HHHHHHHHHHHcccccCCceEEEcCcccH-HHHhhcCCCc-EEEEEe-cCHHHHHHHHhcccccccCCCccccccccccC
Q 022951 123 IIINLLSKRLEAGEAKGEAGFILDGFPRT-EILEGVTDID-LVINLK-LREEALLAKCLGRRICSECGGNYNVACIDIKG 199 (289)
Q Consensus 123 ~~~~ll~~~l~~~~~~~~~g~Ildg~p~~-~~l~~~~~~d-~vI~Ld-~~~e~l~~Rl~~R~~~~~~g~~y~~~~~~~~~ 199 (289)
.....+...+.. +..+|+|+.... ..+.... ++ +++++. ++.+.+.+|+..|.
T Consensus 85 ~~~~~i~~~l~~-----g~~vv~d~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~~Rl~~R~------------------ 140 (207)
T 2j41_A 85 TPVQYVKDTMDE-----GHDVFLEIEVEGAKQVRKKF-PDALFIFLAPPSLEHLRERLVGRG------------------ 140 (207)
T ss_dssp EEHHHHHHHHHT-----TCEEEEECCGGGHHHHHHHC-TTSEEEEEECCC------------------------------
T ss_pred CCHHHHHHHHHc-----CCeEEEEECHHHHHHHHHhc-CCeEEEEEECCCHHHHHHHHHhcC------------------
Confidence 001122222322 347888885443 3343332 24 344443 56788888887763
Q ss_pred CCCCCCCCCCCCCCCCccccCccccCCCcHHHHHHHHHHHHHhchHHHHHHHHcCcEEEEeCCCCcccHHHHHHHHhccC
Q 022951 200 ENGNPGMYMGPLLPPPHCASKLITRSDDKEEVVRERLRIYNEKSRPVEEFYRRRGKLLEFDLPGGIPESWPKLLQALNLE 279 (289)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~L~~r~~d~~~~~~~rl~~y~~~~~~l~~~y~~~~~l~~id~~~~~~ev~~~i~~~l~~~ 279 (289)
+++.+.+.+|+..+..... ++.. ..++ |+++ ++++++.+|.++|..+
T Consensus 141 --------------------------~~~~~~~~~rl~~~~~~~~----~~~~-~d~v-I~n~-~~e~~~~~i~~~l~~~ 187 (207)
T 2j41_A 141 --------------------------TESDEKIQSRINEARKEVE----MMNL-YDYV-VVND-EVELAKNRIQCIVEAE 187 (207)
T ss_dssp -----------------------------------------CGGG----GGGG-CSEE-EECS-SHHHHHHHHHHHHHHH
T ss_pred --------------------------CCCHHHHHHHHHHHHHHHh----cccc-CCEE-EECC-CHHHHHHHHHHHHHHh
Confidence 2234556677776654432 2332 3344 4444 8999999999999765
Q ss_pred Cc
Q 022951 280 DP 281 (289)
Q Consensus 280 ~~ 281 (289)
..
T Consensus 188 ~~ 189 (207)
T 2j41_A 188 HL 189 (207)
T ss_dssp HT
T ss_pred hc
Confidence 43
No 91
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=99.09 E-value=5.6e-10 Score=94.27 Aligned_cols=152 Identities=17% Similarity=0.237 Sum_probs=84.2
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHHHhCCCeeehH---------------------HHHHHHHHcCCccCH--------HHH
Q 022951 74 HVQWVFLGCPGVGKGTYASRLSNLLGVPHIATG---------------------DLLDEIVSQGKLVSD--------EII 124 (289)
Q Consensus 74 ~~~Ivl~GppGsGKSTlak~La~~lg~~~i~~d---------------------~l~~~~l~~g~~v~~--------~~~ 124 (289)
..+|+|+||+||||||+++.|+..+...+++.. ..+..+...+..... ...
T Consensus 7 g~ii~l~Gp~GsGKSTl~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (205)
T 3tr0_A 7 ANLFIISAPSGAGKTSLVRALVKALAEIKISISHTTRPKRPGDQEGVDYFFIDETRFQAMVKEGAFLEHATIYERHYGTE 86 (205)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHSSSEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHHTCEEEEEEETTEEEEEE
T ss_pred CcEEEEECcCCCCHHHHHHHHHhhCCCeEEeceeccCCCchhHhcCceEEeccHHHHHHHHhcCcEEeeeeeecccccch
Confidence 457899999999999999999987642222211 111111111100000 000
Q ss_pred HHHHHHHHHcccccCCceEEEcCcccH-HHHhhcCCCcEEEEE-ecCHHHHHHHHhcccccccCCCccccccccccCCCC
Q 022951 125 INLLSKRLEAGEAKGEAGFILDGFPRT-EILEGVTDIDLVINL-KLREEALLAKCLGRRICSECGGNYNVACIDIKGENG 202 (289)
Q Consensus 125 ~~ll~~~l~~~~~~~~~g~Ildg~p~~-~~l~~~~~~d~vI~L-d~~~e~l~~Rl~~R~~~~~~g~~y~~~~~~~~~~~~ 202 (289)
...+...+.. +..+|+|+.+.. ..+........+||+ ..+.+.+.+|+.+|..
T Consensus 87 ~~~i~~~l~~-----g~~vi~d~~~~~~~~~~~~~~~~~~v~~~~~~~e~l~~Rl~~R~~-------------------- 141 (205)
T 3tr0_A 87 KDWVLRQLKA-----GRDVLLEIDWQGARQIRELFPPALSIFILPPSIEALRERLIKRRQ-------------------- 141 (205)
T ss_dssp HHHHHHHHHT-----TCEEEEECCHHHHHHHHHHCTTCEEEEEECSCHHHHHHHHHTCTT--------------------
T ss_pred HHHHHHHHHc-----CCeEEEEECHHHHHHHHHhCCCcEEEEEECcCHHHHHHHHHHhCC--------------------
Confidence 0112222322 346788875554 233332222234555 4579999999998842
Q ss_pred CCCCCCCCCCCCCccccCccccCCCcHHHHHHHHHHHHHhchHHHHHHHHcCcEEEEeCCCCcccHHHHHHHHhccCCc
Q 022951 203 NPGMYMGPLLPPPHCASKLITRSDDKEEVVRERLRIYNEKSRPVEEFYRRRGKLLEFDLPGGIPESWPKLLQALNLEDP 281 (289)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~L~~r~~d~~~~~~~rl~~y~~~~~~l~~~y~~~~~l~~id~~~~~~ev~~~i~~~l~~~~~ 281 (289)
++.+.+++|+..+.... .++. ...++.+| + ++++++++|.++|..+..
T Consensus 142 ------------------------~~~~~i~~rl~~~~~~~----~~~~-~~d~vi~n-~-~~~~~~~~l~~~i~~~~~ 189 (205)
T 3tr0_A 142 ------------------------DDTAIIEQRLALAREEM----AHYK-EFDYLVVN-D-NFDQAVQNLIHIISAERL 189 (205)
T ss_dssp ------------------------SCSSTHHHHHHHHHHHH----TTGG-GCSEEEEC-S-SHHHHHHHHHHHHHHHTT
T ss_pred ------------------------CCHHHHHHHHHHHHHHH----hccc-CCCEEEEC-C-CHHHHHHHHHHHHHHHHh
Confidence 22344667777765432 2332 23344444 3 899999999999976544
No 92
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=99.09 E-value=2.9e-10 Score=94.50 Aligned_cols=103 Identities=16% Similarity=0.137 Sum_probs=59.4
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHHh---CCCeeehH-HHHHHHHHcCCccCH----HHHHHHHHHH--HHcccccCCce
Q 022951 73 KHVQWVFLGCPGVGKGTYASRLSNLL---GVPHIATG-DLLDEIVSQGKLVSD----EIIINLLSKR--LEAGEAKGEAG 142 (289)
Q Consensus 73 ~~~~Ivl~GppGsGKSTlak~La~~l---g~~~i~~d-~l~~~~l~~g~~v~~----~~~~~ll~~~--l~~~~~~~~~g 142 (289)
++++|+|+|++||||||+++.|++.+ |++++.++ +.+...+........ +.+.++.... +.. . + .
T Consensus 4 ~g~~i~l~G~~GsGKST~~~~L~~~l~~~g~~~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-~-~ 78 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDNIRQGLNKNLGFSPEDREENVRRIAEVAKLFAD---A-G-L 78 (179)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHTTTTTTTCCSSHHHHHHHHHHHHHHHHHHHH---T-T-C
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHhhCCCcEEEECChHHHHHHhhccccccccHHHHHHHHHHHHHHHHH---C-C-C
Confidence 46789999999999999999999988 87777443 222222221111111 1222222111 111 1 1 2
Q ss_pred EEEcC-c-ccH---HH----HhhcCCCcEEEEEecCHHHHHHHHhcc
Q 022951 143 FILDG-F-PRT---EI----LEGVTDIDLVINLKLREEALLAKCLGR 180 (289)
Q Consensus 143 ~Ildg-~-p~~---~~----l~~~~~~d~vI~Ld~~~e~l~~Rl~~R 180 (289)
+++.+ . +.. .. +.....++++|||++|++++.+|+.+|
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~e~~~~R~~~~ 125 (179)
T 2pez_A 79 VCITSFISPYTQDRNNARQIHEGASLPFFEVFVDAPLHVCEQRDVKG 125 (179)
T ss_dssp EEEEECCCCCHHHHHHHHHHHHHTTCCEEEEEEECCHHHHHHHCTTS
T ss_pred EEEEecCCcchHHHHHHHHHhhccCCCeEEEEEeCCHHHHHHHHhhh
Confidence 34433 3 321 11 122224789999999999999998654
No 93
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=99.07 E-value=2.3e-09 Score=90.82 Aligned_cols=103 Identities=14% Similarity=0.040 Sum_probs=62.3
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHHh---CCC--eeehHHHHHHHHHcCCccCHHHHHHH---HHHHHHcccccCCceEE
Q 022951 73 KHVQWVFLGCPGVGKGTYASRLSNLL---GVP--HIATGDLLDEIVSQGKLVSDEIIINL---LSKRLEAGEAKGEAGFI 144 (289)
Q Consensus 73 ~~~~Ivl~GppGsGKSTlak~La~~l---g~~--~i~~d~l~~~~l~~g~~v~~~~~~~l---l~~~l~~~~~~~~~g~I 144 (289)
++.+|+|+|++||||||+++.|+..+ |.. +++.+++... +..+.....+..... +.......... +..+|
T Consensus 24 ~g~~i~l~G~sGsGKSTl~~~La~~l~~~G~~~~~~d~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~vi 101 (200)
T 3uie_A 24 KGCVIWVTGLSGSGKSTLACALNQMLYQKGKLCYILDGDNVRHG-LNRDLSFKAEDRAENIRRVGEVAKLFADA-GIICI 101 (200)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHTTT-TTTTCCSSHHHHHHHHHHHHHHHHHHHHT-TCEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhcCceEEEecCchhhhH-hhcccCcChHHHHHHHHHHHHHHHHHHhC-CceEE
Confidence 46789999999999999999999998 665 8888777522 222222333222211 11111111111 33566
Q ss_pred EcC-cccH---HHHhhcCC--CcEEEEEecCHHHHHHHH
Q 022951 145 LDG-FPRT---EILEGVTD--IDLVINLKLREEALLAKC 177 (289)
Q Consensus 145 ldg-~p~~---~~l~~~~~--~d~vI~Ld~~~e~l~~Rl 177 (289)
.+. .+.. +.+..+.. ..++|||++|.+++.+|+
T Consensus 102 ~~~~~~~~~~r~~~~~~~~~~~~~~v~L~a~~e~~~~R~ 140 (200)
T 3uie_A 102 ASLISPYRTDRDACRSLLPEGDFVEVFMDVPLSVCEARD 140 (200)
T ss_dssp EECCCCCHHHHHHHHHTSCTTSEEEEEECCCHHHHHHHC
T ss_pred EecCCchHHHHHHHHHhcCCCCEEEEEEeCCHHHHHHhc
Confidence 554 3322 44444433 345799999999999997
No 94
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=99.07 E-value=3.9e-10 Score=99.41 Aligned_cols=107 Identities=15% Similarity=0.115 Sum_probs=65.3
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhC--CCeeehHHHHHH------HHH-cCCccCHHH----HHHHHHHHHHcccccC
Q 022951 73 KHVQWVFLGCPGVGKGTYASRLSNLLG--VPHIATGDLLDE------IVS-QGKLVSDEI----IINLLSKRLEAGEAKG 139 (289)
Q Consensus 73 ~~~~Ivl~GppGsGKSTlak~La~~lg--~~~i~~d~l~~~------~l~-~g~~v~~~~----~~~ll~~~l~~~~~~~ 139 (289)
.+++|+|+|+|||||||+++.|++.++ ..+++.|.+... +.. .|... .+. ...++...+......
T Consensus 31 ~~~~i~l~G~~GsGKSTla~~L~~~l~~~~~~~~~D~~r~~~~~~~~i~~~~g~~~-~~~~~~~~~~~~~~~~~~~~~~- 108 (253)
T 2p5t_B 31 QPIAILLGGQSGAGKTTIHRIKQKEFQGNIVIIDGDSFRSQHPHYLELQQEYGKDS-VEYTKDFAGKMVESLVTKLSSL- 108 (253)
T ss_dssp SCEEEEEESCGGGTTHHHHHHHHHHTTTCCEEECGGGGGTTSTTHHHHHTTCSSTT-HHHHHHHHHHHHHHHHHHHHHT-
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhcCCCcEEEecHHHHHhchhHHHHHHHcCchH-HHHhhHHHHHHHHHHHHHHHhc-
Confidence 467899999999999999999999986 566777665311 111 12221 111 111112111111111
Q ss_pred CceEEEcCcccH--------HHHhhcCCCcEEEEEecCHHHHHHHHhccc
Q 022951 140 EAGFILDGFPRT--------EILEGVTDIDLVINLKLREEALLAKCLGRR 181 (289)
Q Consensus 140 ~~g~Ildg~p~~--------~~l~~~~~~d~vI~Ld~~~e~l~~Rl~~R~ 181 (289)
+.+||+|+++.. +.+......-.++++++|.+++.+|+.+|.
T Consensus 109 g~~vVid~~~~~~~~~~~~~~~l~~~g~~v~lv~l~~~~e~~~~R~~~R~ 158 (253)
T 2p5t_B 109 GYNLLIEGTLRTVDVPKKTAQLLKNKGYEVQLALIATKPELSYLSTLIRY 158 (253)
T ss_dssp TCCEEEECCTTSSHHHHHHHHHHHHTTCEEEEEEECCCHHHHHHHHHHHH
T ss_pred CCCEEEeCCCCCHHHHHHHHHHHHHCCCcEEEEEEeCCHHHHHHHHHHHH
Confidence 348999997664 122222223346788999999999998885
No 95
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=99.01 E-value=5.8e-10 Score=98.48 Aligned_cols=106 Identities=21% Similarity=0.206 Sum_probs=68.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhCCCeeehHHHH--HHH--H--------HcCC-------------ccCHHHHHHHHH
Q 022951 75 VQWVFLGCPGVGKGTYASRLSNLLGVPHIATGDLL--DEI--V--------SQGK-------------LVSDEIIINLLS 129 (289)
Q Consensus 75 ~~Ivl~GppGsGKSTlak~La~~lg~~~i~~d~l~--~~~--l--------~~g~-------------~v~~~~~~~ll~ 129 (289)
++|+|+|||||||||+|+.|++.++..+++.|++. +.+ . ..+. .+....+.+...
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~~~~~~i~~D~~~~~~~~~~~t~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~f~~~~~ 81 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQETGWPVVALDRVQCCPQIATGSGRPLESELQSTRRIYLDSRPLTEGILDAESAHRRLI 81 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHCCCEEECCSGGGCGGGTTTTTCCCGGGGTTCCEECSCCCCGGGCSCCHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHhcCCCeEEeccHHhccCCCccccCCCCHHHHhCCCeEEEeeeccccccccHHHHHHHHH
Confidence 47899999999999999999999999999998864 110 0 0000 233344555555
Q ss_pred HHHHcccccCCceEEEcCcccH---HHHhh----cCCCcEEEEEecCH-HHHHHHHhcccc
Q 022951 130 KRLEAGEAKGEAGFILDGFPRT---EILEG----VTDIDLVINLKLRE-EALLAKCLGRRI 182 (289)
Q Consensus 130 ~~l~~~~~~~~~g~Ildg~p~~---~~l~~----~~~~d~vI~Ld~~~-e~l~~Rl~~R~~ 182 (289)
..+ ..... +..+|++|.... ..+.. ..-.-.+|||++|. +.+.+|+.+|..
T Consensus 82 ~~i-~~~~~-g~~vIl~gg~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~e~l~~Rl~~R~~ 140 (253)
T 2ze6_A 82 FEV-DWRKS-EEGLILEGGSISLLNCMAKSPFWRSGFQWHVKRLRLGDSDAFLTRAKQRVA 140 (253)
T ss_dssp HHH-HTTTT-SSEEEEEECCHHHHHHHHHCTTTTSSCEEEEEECCCCCHHHHHHHHHHHHH
T ss_pred HHH-HHHhC-CCCeEEeccHHHHHHHHHhcccccccCceEEEEecchhHHHHHHHHHHHHH
Confidence 555 32222 456777753222 22332 11123699999997 999999999853
No 96
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=98.96 E-value=1.3e-09 Score=91.48 Aligned_cols=54 Identities=15% Similarity=0.145 Sum_probs=18.5
Q ss_pred ccccCCCcHHHHHHHHHHHHHhchHHHHHHHHcCcEEEEeCCCCcccHHHHHHHHhccC
Q 022951 221 LITRSDDKEEVVRERLRIYNEKSRPVEEFYRRRGKLLEFDLPGGIPESWPKLLQALNLE 279 (289)
Q Consensus 221 L~~r~~d~~~~~~~rl~~y~~~~~~l~~~y~~~~~l~~id~~~~~~ev~~~i~~~l~~~ 279 (289)
|..|..++++.+++|+......... .+.....++.+| + +.++.+.+|.++|..+
T Consensus 132 l~~Rg~~~~~~i~~rl~~~~~~~~~---~~~~~~d~vi~n-d-~~~~a~~~l~~~i~~~ 185 (186)
T 3a00_A 132 LEGRGTETEESINKRLSAAQAELAY---AETGAHDKVIVN-D-DLDKAYKELKDFIFAE 185 (186)
T ss_dssp ------------------------------CCCCSEEEEC-S-SHHHHHHHHHHHHTTC
T ss_pred HHhcCCCCHHHHHHHHHHHHHHHHh---hcccCCcEEEEC-c-CHHHHHHHHHHHHHhc
Confidence 3334455667788888877654321 111223455554 3 7999999999999765
No 97
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=98.94 E-value=2.1e-09 Score=106.20 Aligned_cols=105 Identities=16% Similarity=0.094 Sum_probs=62.3
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHHh---CCCeeehH-HHHHHHHHcCCccCHH----HHHHHHHHHHHcccccCCceEE
Q 022951 73 KHVQWVFLGCPGVGKGTYASRLSNLL---GVPHIATG-DLLDEIVSQGKLVSDE----IIINLLSKRLEAGEAKGEAGFI 144 (289)
Q Consensus 73 ~~~~Ivl~GppGsGKSTlak~La~~l---g~~~i~~d-~l~~~~l~~g~~v~~~----~~~~ll~~~l~~~~~~~~~g~I 144 (289)
++++|+|+|+|||||||+|+.|++.+ |+.++.+| +.++..+..+....++ .+..+ .+........ +..+|
T Consensus 51 ~g~lIvLtGlsGSGKSTlAr~La~~L~~~G~~~v~lDgD~iR~~L~~~~~fs~~dree~~r~i-~eva~~~l~~-G~iVI 128 (630)
T 1x6v_B 51 RGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDNIRQGLNKNLGFSPEDREENVRRI-AEVAKLFADA-GLVCI 128 (630)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEESHHHHTTTTTTTCCSSHHHHHHHHHHH-HHHHHHHHHT-TCEEE
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEechHHhhhccCccccCChhhhHHHHHHH-HHHHHHHHhC-CCEEE
Confidence 56899999999999999999999999 88877664 3343322222223321 12121 1111111111 23455
Q ss_pred EcC-cccH---HH----HhhcCCCcEEEEEecCHHHHHHHHhc
Q 022951 145 LDG-FPRT---EI----LEGVTDIDLVINLKLREEALLAKCLG 179 (289)
Q Consensus 145 ldg-~p~~---~~----l~~~~~~d~vI~Ld~~~e~l~~Rl~~ 179 (289)
.+. .+.. +. +.....++++|||++|.+++.+|+.+
T Consensus 129 ~d~~s~~~~~r~~~r~ll~~~g~p~~vV~Ldap~Evl~~Rl~r 171 (630)
T 1x6v_B 129 TSFISPYTQDRNNARQIHEGASLPFFEVFVDAPLHVCEQRDVK 171 (630)
T ss_dssp EECCCCCHHHHHHHHHHHHTTTCCEEEEEEECCHHHHHHHCTT
T ss_pred EeCchhhHHHHHHHHHHHHhCCCCeEEEEEECCHHHHHHHhcc
Confidence 552 2321 22 22222368899999999999999863
No 98
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=98.91 E-value=2.1e-09 Score=104.50 Aligned_cols=110 Identities=15% Similarity=0.142 Sum_probs=63.8
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHHHhCCC-----eeehHHHHHHHHHcC---Cc---cCHHHH---HHHHHHHHH----
Q 022951 72 GKHVQWVFLGCPGVGKGTYASRLSNLLGVP-----HIATGDLLDEIVSQG---KL---VSDEII---INLLSKRLE---- 133 (289)
Q Consensus 72 ~~~~~Ivl~GppGsGKSTlak~La~~lg~~-----~i~~d~l~~~~l~~g---~~---v~~~~~---~~ll~~~l~---- 133 (289)
..+.+|+|+|+|||||||+|+.|++.+++. +|+.|++.+...... .. ..++.+ .......+.
T Consensus 33 ~~~~lIvlvGlpGSGKSTia~~La~~L~~~~~d~~v~s~D~~r~~~~~~~~~~~~f~~~~~~~~~~re~~~~~~l~~~~~ 112 (520)
T 2axn_A 33 NSPTVIVMVGLPARGKTYISKKLTRYLNWIGVPTKVFNVGEYRREAVKQYSSYNFFRPDNEEAMKVRKQCALAALRDVKS 112 (520)
T ss_dssp CCCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHHHHHSCCCCGGGGCTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCCeEEecccHHHHHhccCCccccccCcccHHHHHHHHHHHHHHHHHHHH
Confidence 456789999999999999999999998533 467888775543221 11 111211 112111121
Q ss_pred cccccCCceEEEcCcccH----HH----HhhcCCCcEEEEEecC-HHHHHHHHhccc
Q 022951 134 AGEAKGEAGFILDGFPRT----EI----LEGVTDIDLVINLKLR-EEALLAKCLGRR 181 (289)
Q Consensus 134 ~~~~~~~~g~Ildg~p~~----~~----l~~~~~~d~vI~Ld~~-~e~l~~Rl~~R~ 181 (289)
......+..+|+|+.... +. ++......++|++.|+ ++.+.+|+..|.
T Consensus 113 ~L~~~~g~~VIvDat~~~~~~R~~~~~~a~~~g~~v~~l~~~~~d~e~i~~ri~~r~ 169 (520)
T 2axn_A 113 YLAKEGGQIAVFDATNTTRERRHMILHFAKENDFKAFFIESVCDDPTVVASNIMEVK 169 (520)
T ss_dssp HHHHSCCCEEEEESCCCSHHHHHHHHHHHHHHTCEEEEEEEECCCHHHHHHHHHHHT
T ss_pred HHHhcCCceEEecCCCCCHHHHHHHHHHHHHcCCeEEEEEEeCChHHHHHHHHHhhh
Confidence 110012468999985444 12 2222212456677777 788888887664
No 99
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=98.89 E-value=2e-08 Score=83.75 Aligned_cols=107 Identities=27% Similarity=0.406 Sum_probs=64.4
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhCCC--eeehHHHHHHHHHcCC---ccCH-----HHHHHHHHHHHHcccccCCce
Q 022951 73 KHVQWVFLGCPGVGKGTYASRLSNLLGVP--HIATGDLLDEIVSQGK---LVSD-----EIIINLLSKRLEAGEAKGEAG 142 (289)
Q Consensus 73 ~~~~Ivl~GppGsGKSTlak~La~~lg~~--~i~~d~l~~~~l~~g~---~v~~-----~~~~~ll~~~l~~~~~~~~~g 142 (289)
++.+|+|+||+||||||+++.|+..++.. +++.+++... ...+. .++. ....+.+........ ..+..
T Consensus 8 ~g~~i~l~G~~GsGKSTl~~~La~~~~~g~i~i~~d~~~~~-~~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~-~~~~~ 85 (191)
T 1zp6_A 8 GGNILLLSGHPGSGKSTIAEALANLPGVPKVHFHSDDLWGY-IKHGRIDPWLPQSHQQNRMIMQIAADVAGRYA-KEGYF 85 (191)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHTCSSSCEEEECTTHHHHT-CCSSCCCTTSSSHHHHHHHHHHHHHHHHHHHH-HTSCE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhccCCCeEEEcccchhhh-hhcccccCCccchhhhhHHHHHHHHHHHHHHh-ccCCe
Confidence 45789999999999999999999876544 7788776532 12111 1211 112222221111111 11345
Q ss_pred EEEcCcccH---HHHhhcCCCcEEEEEecCHHHHHHHHhccc
Q 022951 143 FILDGFPRT---EILEGVTDIDLVINLKLREEALLAKCLGRR 181 (289)
Q Consensus 143 ~Ildg~p~~---~~l~~~~~~d~vI~Ld~~~e~l~~Rl~~R~ 181 (289)
+++|++... +.+..+.....++++.++.++++.|+..|.
T Consensus 86 ~~~~~~~~~~~l~~~~~~~~~~~~ls~~~~~~v~~~R~~~r~ 127 (191)
T 1zp6_A 86 VILDGVVRPDWLPAFTALARPLHYIVLRTTAAEAIERCLDRG 127 (191)
T ss_dssp EEECSCCCTTTTHHHHTTCSCEEEEEEECCHHHHHHHHHTTC
T ss_pred EEEeccCcHHHHHHHHhcCCCeEEEEecCCHHHHHHHHHhcC
Confidence 788875443 233322223468999999999999999874
No 100
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=98.83 E-value=3.9e-09 Score=103.16 Aligned_cols=104 Identities=15% Similarity=0.067 Sum_probs=64.5
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhCC-----CeeehHHHHHHHHHcCCccCHHHHHH---HHHHHHHcccccCCceEE
Q 022951 73 KHVQWVFLGCPGVGKGTYASRLSNLLGV-----PHIATGDLLDEIVSQGKLVSDEIIIN---LLSKRLEAGEAKGEAGFI 144 (289)
Q Consensus 73 ~~~~Ivl~GppGsGKSTlak~La~~lg~-----~~i~~d~l~~~~l~~g~~v~~~~~~~---ll~~~l~~~~~~~~~g~I 144 (289)
.+++|+|+|++||||||+|+.|++.++. .+++.|.+. ..+..+....+..... .+.+.+...... +.++|
T Consensus 371 ~~~~I~l~G~~GsGKSTia~~La~~L~~~G~~~~~ld~D~ir-~~l~~~~~f~~~er~~~l~~i~~~~~~~l~~-G~~VI 448 (546)
T 2gks_A 371 QGFCVWLTGLPCAGKSTIAEILATMLQARGRKVTLLDGDVVR-THLSRGLGFSKEDRITNILRVGFVASEIVKH-NGVVI 448 (546)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECHHHHH-HHTCTTCCSSHHHHHHHHHHHHHHHHHHHHT-TCEEE
T ss_pred cceEEEccCCCCCCHHHHHHHHHHHhhhcCCeEEEECchHhh-hhhcccccccHHHHHHHHHHHHHHHHHHHhC-CCEEE
Confidence 3578999999999999999999998863 677776554 4333332233322111 111111111111 45899
Q ss_pred EcC-cccH---HHHhhc-CCCc-EEEEEecCHHHHHHHHh
Q 022951 145 LDG-FPRT---EILEGV-TDID-LVINLKLREEALLAKCL 178 (289)
Q Consensus 145 ldg-~p~~---~~l~~~-~~~d-~vI~Ld~~~e~l~~Rl~ 178 (289)
+|+ ++.. +.+..+ ..++ ++|||++|.+++.+|+.
T Consensus 449 ~d~~~~~~~~r~~~~~~l~~~d~~vV~L~~~~e~~~~Rl~ 488 (546)
T 2gks_A 449 CALVSPYRSARNQVRNMMEEGKFIEVFVDAPVEVCEERDV 488 (546)
T ss_dssp EECCCCCHHHHHHHHTTSCTTCEEEEEEECCGGGHHHHCC
T ss_pred EEcCCCCHHHHHHHHHHhhcCCEEEEEEeCCHHHHHHHhh
Confidence 996 3322 223332 2356 89999999999999985
No 101
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=98.77 E-value=4e-08 Score=83.41 Aligned_cols=106 Identities=19% Similarity=0.206 Sum_probs=64.1
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhC--CCeeehHHHHH--------HHHHc----CCccCHHHHHHHHHHHHHcc---
Q 022951 73 KHVQWVFLGCPGVGKGTYASRLSNLLG--VPHIATGDLLD--------EIVSQ----GKLVSDEIIINLLSKRLEAG--- 135 (289)
Q Consensus 73 ~~~~Ivl~GppGsGKSTlak~La~~lg--~~~i~~d~l~~--------~~l~~----g~~v~~~~~~~ll~~~l~~~--- 135 (289)
++.+|.|+||+||||||+++.|+..++ +.+++.|..+. +...- ......+.+.+.++..-...
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~l~~~~~~~i~~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 84 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQALARTLGERVALLPMDHYYKDLGHLPLEERLRVNYDHPDAFDLALYLEHAQALLRGLPVE 84 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHHGGGEEEEEGGGCBCCCTTSCHHHHHHSCTTSGGGBCHHHHHHHHHHHHTTCCEE
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHhCCCeEEEecCccccCcccccHHHhcCCCCCChhhhhHHHHHHHHHHHHcCCCcC
Confidence 457899999999999999999999988 88887765431 11110 11122233334443221110
Q ss_pred ---------c-------ccCCceEEEcCcccH--HHHhhcCCCcEEEEEecCHHHHHHHHhcc
Q 022951 136 ---------E-------AKGEAGFILDGFPRT--EILEGVTDIDLVINLKLREEALLAKCLGR 180 (289)
Q Consensus 136 ---------~-------~~~~~g~Ildg~p~~--~~l~~~~~~d~vI~Ld~~~e~l~~Rl~~R 180 (289)
. ....+.+|+|+.... +.+..+ +|.+||||++.+..+.|+..|
T Consensus 85 ~~~~~~s~g~~~~~~~~~~~~~~li~~~~ll~~de~~~~~--~d~~i~ld~~~~~~~~r~l~r 145 (211)
T 3asz_A 85 MPVYDFRAYTRSPRRTPVRPAPVVILEGILVLYPKELRDL--MDLKVFVDADADERFIRRLKR 145 (211)
T ss_dssp ECCEETTTTEECSSCEEECCCSEEEEESTTTTSSHHHHTT--CSEEEEEECCHHHHHHHHHHH
T ss_pred CCcccCcccCCCCCeEEeCCCcEEEEeehhhccCHHHHHh--cCEEEEEeCCHHHHHHHHHHH
Confidence 0 011246677762221 333332 599999999999988887666
No 102
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=98.77 E-value=4.1e-08 Score=82.00 Aligned_cols=104 Identities=21% Similarity=0.139 Sum_probs=62.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhCC-CeeehHHHHHHHHHcCCccCH-------HHHHHHHHHHHHcccccCCceEEEc
Q 022951 75 VQWVFLGCPGVGKGTYASRLSNLLGV-PHIATGDLLDEIVSQGKLVSD-------EIIINLLSKRLEAGEAKGEAGFILD 146 (289)
Q Consensus 75 ~~Ivl~GppGsGKSTlak~La~~lg~-~~i~~d~l~~~~l~~g~~v~~-------~~~~~ll~~~l~~~~~~~~~g~Ild 146 (289)
.+++|+||+||||||+++.|+..++. .+++.+++... ...+ .++. ....+.+.......... +..+|+|
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~~~~g~~~i~~d~~~~~-~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~ild 79 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAAQLDNSAYIEGDIINHM-VVGG-YRPPWESDELLALTWKNITDLTVNFLLA-QNDVVLD 79 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHSSSEEEEEHHHHHTT-CCTT-CCCGGGCHHHHHHHHHHHHHHHHHHHHT-TCEEEEE
T ss_pred eEEEEECCCCCcHHHHHHHHhcccCCeEEEcccchhhh-hccc-cccCccchhHHHHHHHHHHHHHHHHHhc-CCcEEEe
Confidence 46889999999999999999998765 78888776522 1111 1211 11222222221111111 3478899
Q ss_pred CcccH---HHHhhc------CCCcEEEEEecCHHHHHHHHhccc
Q 022951 147 GFPRT---EILEGV------TDIDLVINLKLREEALLAKCLGRR 181 (289)
Q Consensus 147 g~p~~---~~l~~~------~~~d~vI~Ld~~~e~l~~Rl~~R~ 181 (289)
++... +.+..+ .....+++|+++.+.+.+|+..|.
T Consensus 80 ~~~~~~~~~~~~~~~~s~g~~~~~~~i~L~~~~e~l~~R~~~r~ 123 (189)
T 2bdt_A 80 YIAFPDEAEALAQTVQAKVDDVEIRFIILWTNREELLRRDALRK 123 (189)
T ss_dssp SCCCHHHHHHHHHHHHHHCSSEEEEEEEEECCHHHHHHHTTTSC
T ss_pred eccCHHHHHHHHHHHHhcccCCCeEEEEEeCCHHHHHHHHHhcc
Confidence 84332 222221 113457899999999999998875
No 103
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=98.71 E-value=1.1e-08 Score=94.03 Aligned_cols=108 Identities=15% Similarity=0.110 Sum_probs=70.5
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhCCCeeehHHHH--------------HH----------HHHc-CCccCHHHHHHH
Q 022951 73 KHVQWVFLGCPGVGKGTYASRLSNLLGVPHIATGDLL--------------DE----------IVSQ-GKLVSDEIIINL 127 (289)
Q Consensus 73 ~~~~Ivl~GppGsGKSTlak~La~~lg~~~i~~d~l~--------------~~----------~l~~-g~~v~~~~~~~l 127 (289)
++.+|+|+||+||||||++..||++++..+|+.|.+. .+ ..+. .+......+.+.
T Consensus 39 ~~~lIvI~GPTgsGKTtLa~~LA~~l~~eiIs~Ds~qvYr~mdIgTakp~~eE~~gvphhlidi~~~~~e~~s~~~F~~~ 118 (339)
T 3a8t_A 39 KEKLLVLMGATGTGKSRLSIDLAAHFPLEVINSDKMQVYKGLDITTNKISVPDRGGVPHHLLGEVDPARGELTPADFRSL 118 (339)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHTTSCEEEEECCSSTTBSSCTTTTTCCCSGGGTTCCEESSSCBCGGGCCCCHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHCCCcEEcccccccccceeeecCCCCHHHHcCCCEeeccccCcccCccCHHHHHHH
Confidence 3468999999999999999999999999999988773 11 0111 233444555555
Q ss_pred HHHHHHcccccCCceEEEcCcccH---HHHhhc--------------------C-CCcEEEEEecCHHHHHHHHhccc
Q 022951 128 LSKRLEAGEAKGEAGFILDGFPRT---EILEGV--------------------T-DIDLVINLKLREEALLAKCLGRR 181 (289)
Q Consensus 128 l~~~l~~~~~~~~~g~Ildg~p~~---~~l~~~--------------------~-~~d~vI~Ld~~~e~l~~Rl~~R~ 181 (289)
....+...... ++..|+.|-... ..+..+ . ...++|+|+++.+++.+||.+|.
T Consensus 119 a~~~i~~i~~~-g~~pIlvGGtglYi~all~g~~~p~~~d~~~a~~~~~~~~~~~~~~~~i~L~~~re~L~~RI~~R~ 195 (339)
T 3a8t_A 119 AGKAVSEITGR-RKLPVLVGGSNSFIHALLVDRFDSSGPGVFEEGSHSVVSSELRYDCCFLWVDVSVKVLTDYLAKRV 195 (339)
T ss_dssp HHHHHHHHHHT-TCEEEEECCCHHHHHHHHBSSCCTTCC-------------CBSSEEEEEEEECCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhc-CCeEEEEcCHHHHHHHHHhCCCCCcccChhhhcccCccccccccCeEEEEEeCCHHHHHHHHHhhc
Confidence 55545443322 345666653221 233221 1 12468999999999999998874
No 104
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=98.70 E-value=3.5e-08 Score=85.31 Aligned_cols=26 Identities=31% Similarity=0.263 Sum_probs=17.0
Q ss_pred CceEEEEEcCCCCCHHHHHHHHH-HHh
Q 022951 73 KHVQWVFLGCPGVGKGTYASRLS-NLL 98 (289)
Q Consensus 73 ~~~~Ivl~GppGsGKSTlak~La-~~l 98 (289)
+..+|+|+||+||||||+++.|+ ..+
T Consensus 26 ~G~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 26 VGVILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp CCCEEEEECSCC----CHHHHHHC---
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 34688999999999999999999 765
No 105
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=98.67 E-value=3.8e-08 Score=96.66 Aligned_cols=104 Identities=13% Similarity=0.027 Sum_probs=60.0
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHHHhC------CCeeehHHHHHHHHHcCCccCHHHHH---HHHHHHHHcccccCCce
Q 022951 72 GKHVQWVFLGCPGVGKGTYASRLSNLLG------VPHIATGDLLDEIVSQGKLVSDEIII---NLLSKRLEAGEAKGEAG 142 (289)
Q Consensus 72 ~~~~~Ivl~GppGsGKSTlak~La~~lg------~~~i~~d~l~~~~l~~g~~v~~~~~~---~ll~~~l~~~~~~~~~g 142 (289)
.++++|+|+|+|||||||+|+.|++.++ +.+++.|.+.+ .+..+....+.... ..+...+...... +..
T Consensus 394 q~~~~I~l~GlsGSGKSTiA~~La~~L~~~G~~~~~~lD~D~ir~-~l~~~~~f~~~er~~~i~ri~~v~~~~~~~-g~~ 471 (573)
T 1m8p_A 394 TQGFTIFLTGYMNSGKDAIARALQVTLNQQGGRSVSLLLGDTVRH-ELSSELGFTREDRHTNIQRIAFVATELTRA-GAA 471 (573)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHHHHHHHCSSCEEEEEHHHHHH-HTCTTCCCSHHHHHHHHHHHHHHHHHHHHT-TCE
T ss_pred ccceEEEeecCCCCCHHHHHHHHHHHhcccCCceEEEECcHHHHH-HhccccCCChhHHHHHHHHHHHHHHHHHhC-CCE
Confidence 3568899999999999999999999976 35667665543 33322222222211 1111111111111 335
Q ss_pred EEEcCc-ccH---HHHhhc-C--CCcEEEEEecCHHHHHHHH
Q 022951 143 FILDGF-PRT---EILEGV-T--DIDLVINLKLREEALLAKC 177 (289)
Q Consensus 143 ~Ildg~-p~~---~~l~~~-~--~~d~vI~Ld~~~e~l~~Rl 177 (289)
+|++.+ +.. +.+..+ . ...++|||++|.+++.+|.
T Consensus 472 VI~~~is~~~~~R~~~r~l~~~~g~~~~V~Lda~~ev~~~R~ 513 (573)
T 1m8p_A 472 VIAAPIAPYEESRKFARDAVSQAGSFFLVHVATPLEHCEQSD 513 (573)
T ss_dssp EEEECCCCCHHHHHHHHHHHHTTSEEEEEEECCCHHHHHHHC
T ss_pred EEEEcCCCcHHHHHHHHHHHHhcCCeEEEEEeCCHHHHHHHh
Confidence 666642 211 222222 1 2358999999999999995
No 106
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=98.61 E-value=5.4e-07 Score=78.61 Aligned_cols=106 Identities=13% Similarity=0.244 Sum_probs=62.6
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhCCC----------eeehHHHH-----HHHH--HcCC-------ccCHHHHHHHH
Q 022951 73 KHVQWVFLGCPGVGKGTYASRLSNLLGVP----------HIATGDLL-----DEIV--SQGK-------LVSDEIIINLL 128 (289)
Q Consensus 73 ~~~~Ivl~GppGsGKSTlak~La~~lg~~----------~i~~d~l~-----~~~l--~~g~-------~v~~~~~~~ll 128 (289)
++.+|.|+||+||||||+++.|+..+|.. +++.+.+. .+.+ ..+. ....+.+.+.+
T Consensus 24 ~g~iigI~G~~GsGKSTl~k~L~~~lG~~~~~~~~~~i~~v~~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L 103 (245)
T 2jeo_A 24 RPFLIGVSGGTASGKSTVCEKIMELLGQNEVEQRQRKVVILSQDRFYKVLTAEQKAKALKGQYNFDHPDAFDNDLMHRTL 103 (245)
T ss_dssp CSEEEEEECSTTSSHHHHHHHHHHHHTGGGSCGGGCSEEEEEGGGGBCCCCHHHHHHHHTTCCCTTSGGGBCHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhchhcccccCCceEEEeCCcCccccCHhHhhhhhccCCCCCCcccccHHHHHHHH
Confidence 46789999999999999999999988865 56665433 1111 1111 11122233333
Q ss_pred HHHHHccc--------------------ccCCceEEEcCc-ccH-HHHhhcCCCcEEEEEecCHHHHHHHHhccc
Q 022951 129 SKRLEAGE--------------------AKGEAGFILDGF-PRT-EILEGVTDIDLVINLKLREEALLAKCLGRR 181 (289)
Q Consensus 129 ~~~l~~~~--------------------~~~~~g~Ildg~-p~~-~~l~~~~~~d~vI~Ld~~~e~l~~Rl~~R~ 181 (289)
.. +.... ......+|+||. +.. ..+..+ .+.+|+++++.+..+.|...|.
T Consensus 104 ~~-l~~~~~~~~~~ls~g~~~r~~~~~~~~~~~~lilDg~~~~~~~~l~~~--~~~~i~v~th~~~~~~r~~~r~ 175 (245)
T 2jeo_A 104 KN-IVEGKTVEVPTYDFVTHSRLPETTVVYPADVVLFEGILVFYSQEIRDM--FHLRLFVDTDSDVRLSRRVLRD 175 (245)
T ss_dssp HH-HHTTCCEEECCEETTTTEECSSCEEECCCSEEEEECTTTTTSHHHHTT--CSEEEEEECCHHHHHHHHHHHH
T ss_pred HH-HHCCCCeecccccccccCccCceEEecCCCEEEEeCccccccHHHHHh--cCeEEEEECCHHHHHHHHHHHH
Confidence 32 21100 111347888982 221 233333 4899999999988777766664
No 107
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=98.59 E-value=7.6e-08 Score=81.56 Aligned_cols=107 Identities=20% Similarity=0.184 Sum_probs=51.0
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHHh---CCC--eeehHHHHH---HHHHcCCc---------cCHHHHHHHHHHHHHc-
Q 022951 73 KHVQWVFLGCPGVGKGTYASRLSNLL---GVP--HIATGDLLD---EIVSQGKL---------VSDEIIINLLSKRLEA- 134 (289)
Q Consensus 73 ~~~~Ivl~GppGsGKSTlak~La~~l---g~~--~i~~d~l~~---~~l~~g~~---------v~~~~~~~ll~~~l~~- 134 (289)
++.+|.|+|++||||||+++.|+..+ +.. +++.|.+.. .....|.. +..+.+.+.+...+..
T Consensus 21 ~~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~v~~~l~~~ 100 (201)
T 1rz3_A 21 GRLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMDDHIVERAKRYHTGNEEWFEYYYLQWDVEWLTHQLFRQLKAS 100 (201)
T ss_dssp SSEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGGCCCHHHHSSSSSCHHHHHHHTSSCHHHHHHHTGGGTTTC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEeccCcccCCHHHHHhcCCCCccCCCccccCHHHHHHHHHHHHhcC
Confidence 46789999999999999999999876 443 344454431 11112211 1111121111000000
Q ss_pred -------------------ccccCCceEEEcCcccH-HHHhhcCCCcEEEEEecCHHHHHHHHhccc
Q 022951 135 -------------------GEAKGEAGFILDGFPRT-EILEGVTDIDLVINLKLREEALLAKCLGRR 181 (289)
Q Consensus 135 -------------------~~~~~~~g~Ildg~p~~-~~l~~~~~~d~vI~Ld~~~e~l~~Rl~~R~ 181 (289)
.....+..+|+||.... ..+..+ +|.+||+++|.+++++|+..|.
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~vIveg~~l~~~~~~~~--~d~~i~v~~~~~~~~~R~~~R~ 165 (201)
T 1rz3_A 101 HQLTLPFYDHETDTHSKRTVYLSDSDMIMIEGVFLQRKEWRPF--FDFVVYLDCPREIRFARENDQV 165 (201)
T ss_dssp SEEEEEEEETTTTEEEEEEEECTTCSEEEEEETTTTSTTTGGG--CSEEEEECCC------------
T ss_pred CccccCceeccCCCCCCceEEeCCCcEEEEechhhccHHHHhh--cCEEEEEeCCHHHHHHHHhcCC
Confidence 00011456888884332 222222 5899999999999999999885
No 108
>3czq_A Putative polyphosphate kinase 2; structural genomics, APC6299, PSI-2, structure initiative; HET: MSE GOL; 2.23A {Sinorhizobium meliloti}
Probab=98.59 E-value=2.4e-07 Score=83.59 Aligned_cols=162 Identities=14% Similarity=0.060 Sum_probs=93.6
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHHHhCCC---eeehHHHHHHHHHcCCccCHHHHHHHHHHHHHcccccCCceEEEcCc
Q 022951 72 GKHVQWVFLGCPGVGKGTYASRLSNLLGVP---HIATGDLLDEIVSQGKLVSDEIIINLLSKRLEAGEAKGEAGFILDGF 148 (289)
Q Consensus 72 ~~~~~Ivl~GppGsGKSTlak~La~~lg~~---~i~~d~l~~~~l~~g~~v~~~~~~~ll~~~l~~~~~~~~~g~Ildg~ 148 (289)
+.+++|+|.|..||||+|+.+.|.+.++-. ++.+ .++-..+.....+.......... +..+|+|.+
T Consensus 84 ~~~vlIvfEG~DgAGKgt~Ik~L~e~Ldprg~~V~~~----------~~Pt~eE~~~~yl~R~~~~LP~~-G~IvIfDRs 152 (304)
T 3czq_A 84 GKRVMAVFEGRDAAGKGGAIHATTANMNPRSARVVAL----------TKPTETERGQWYFQRYVATFPTA-GEFVLFDRS 152 (304)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHTTSCTTTEEEEEC----------CSCCHHHHTSCTTHHHHTTCCCT-TCEEEEEEC
T ss_pred CCCeEEEEeCCCCCCHHHHHHHHHHHhcccCCeEEEe----------CCcChHHHhchHHHHHHHhcccC-CeEEEEECC
Confidence 458999999999999999999999998533 3332 11111111111122222222222 567788864
Q ss_pred ccH-------------H----HHhh----------cCCCcEEEEEecCHHHHHHHHhcccccccCCCccccccccccCCC
Q 022951 149 PRT-------------E----ILEG----------VTDIDLVINLKLREEALLAKCLGRRICSECGGNYNVACIDIKGEN 201 (289)
Q Consensus 149 p~~-------------~----~l~~----------~~~~d~vI~Ld~~~e~l~~Rl~~R~~~~~~g~~y~~~~~~~~~~~ 201 (289)
..+ + .++. -..+++.+||+++.++..+|+..|..++ ...+.+
T Consensus 153 wYs~v~~~rv~g~~~~~e~~~~~~~In~FE~~L~~~G~~~lKf~L~Is~eeq~kR~~~R~~dp--~k~Wk~--------- 221 (304)
T 3czq_A 153 WYNRAGVEPVMGFCTPDQYEQFLKEAPRFEEMIANEGIHLFKFWINIGREMQLKRFHDRRHDP--LKIWKL--------- 221 (304)
T ss_dssp GGGGTTHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHTCEEEEEEEECCHHHHHHHHHHHHHCT--TTGGGC---------
T ss_pred cchHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhCCCeeEEEEEECCHHHHHHHHHHhhcCc--ccccCC---------
Confidence 322 1 1111 1248899999999999999998875432 111111
Q ss_pred CCCCCCCCCCCCCCccccCccccCCCcHHHHH--HHHHHHHHhchHHHHHHH-HcCcEEEEeCCCCc---ccHHHHHHHH
Q 022951 202 GNPGMYMGPLLPPPHCASKLITRSDDKEEVVR--ERLRIYNEKSRPVEEFYR-RRGKLLEFDLPGGI---PESWPKLLQA 275 (289)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~L~~r~~d~~~~~~--~rl~~y~~~~~~l~~~y~-~~~~l~~id~~~~~---~ev~~~i~~~ 275 (289)
+...++ +....|.+....+...-. ....|+.||++... ..+.+.|.+.
T Consensus 222 --------------------------s~~D~~~~~~~~~y~~a~~~ml~~T~t~~apW~vIda~dk~~arl~v~~~Il~~ 275 (304)
T 3czq_A 222 --------------------------SPMDIAALSKWDDYTGKRDRMLKETHTEHGPWAVIRGNDKRRSRINVIRHMLTK 275 (304)
T ss_dssp --------------------------CHHHHHGGGGHHHHHHHHHHHHHHHCCSSSCEEEEECSSHHHHHHHHHHHHHHH
T ss_pred --------------------------CHHHHHHHHHHHHHHHHHHHHHHhhccCCCCEEEEECCCcchHHHHHHHHHHHH
Confidence 122222 334555555544444322 13469999998744 5677777887
Q ss_pred hccCCc
Q 022951 276 LNLEDP 281 (289)
Q Consensus 276 l~~~~~ 281 (289)
|.....
T Consensus 276 l~~~~~ 281 (304)
T 3czq_A 276 LDYDGK 281 (304)
T ss_dssp CCCTTC
T ss_pred HhhccC
Confidence 776654
No 109
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=98.58 E-value=1.4e-07 Score=84.92 Aligned_cols=37 Identities=19% Similarity=0.280 Sum_probs=30.1
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhC-----CCeeehHHHH
Q 022951 73 KHVQWVFLGCPGVGKGTYASRLSNLLG-----VPHIATGDLL 109 (289)
Q Consensus 73 ~~~~Ivl~GppGsGKSTlak~La~~lg-----~~~i~~d~l~ 109 (289)
++++|.|+|++||||||+|+.|++.++ +.+++.|++.
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~~lg~~~~~~~vI~~D~~~ 45 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQIFRREGVKAVSIEGDAFH 45 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHHHHHHHTCCEEEEEGGGGB
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHhhcCCCeeEeecchhh
Confidence 467899999999999999999999887 7889988876
No 110
>1p6x_A Thymidine kinase; P-loop, LID, transferase; HET: THM; 2.00A {Equid herpesvirus 4} SCOP: c.37.1.1 PDB: 1p72_A* 1p73_A* 1p75_A*
Probab=98.54 E-value=5.3e-07 Score=82.70 Aligned_cols=28 Identities=21% Similarity=0.236 Sum_probs=25.2
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhCC
Q 022951 73 KHVQWVFLGCPGVGKGTYASRLSNLLGV 100 (289)
Q Consensus 73 ~~~~Ivl~GppGsGKSTlak~La~~lg~ 100 (289)
+.++|+|.|+.||||||+++.|++.++.
T Consensus 6 ~~~fI~~EG~dGaGKTT~~~~La~~L~~ 33 (334)
T 1p6x_A 6 TIVRIYLDGVYGIGKSTTGRVMASAASG 33 (334)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHSGGGC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 3589999999999999999999999853
No 111
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=98.53 E-value=2e-07 Score=85.19 Aligned_cols=108 Identities=19% Similarity=0.219 Sum_probs=67.3
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHHHhC-------CCeeehHHHH--HHHH-Hc------C--CccCHHHHHHHHHHHHH
Q 022951 72 GKHVQWVFLGCPGVGKGTYASRLSNLLG-------VPHIATGDLL--DEIV-SQ------G--KLVSDEIIINLLSKRLE 133 (289)
Q Consensus 72 ~~~~~Ivl~GppGsGKSTlak~La~~lg-------~~~i~~d~l~--~~~l-~~------g--~~v~~~~~~~ll~~~l~ 133 (289)
..+.+|.|+||+||||||+++.|+..++ +..++.|... ...+ .. | .....+.+...+.....
T Consensus 90 ~~p~iigI~GpsGSGKSTl~~~L~~ll~~~~~~~~v~~i~~D~f~~~~~~l~~~~~~~~~g~P~~~D~~~l~~~L~~L~~ 169 (321)
T 3tqc_A 90 KVPYIIGIAGSVAVGKSTTSRVLKALLSRWPDHPNVEVITTDGFLYSNAKLEKQGLMKRKGFPESYDMPSLLRVLNAIKS 169 (321)
T ss_dssp CCCEEEEEECCTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGGBCCHHHHHHTTCGGGTTSGGGBCHHHHHHHHHHHHT
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhcccCCCCeEEEEeecccccchhhhhhHHHHhhccCcccccHHHHHHHHHhhhc
Confidence 4578899999999999999999998875 3446666643 1111 11 1 12233444554444322
Q ss_pred cc-c--------------------ccCCceEEEcCcccH--H----------HHhhcCCCcEEEEEecCHHHHHHHHhcc
Q 022951 134 AG-E--------------------AKGEAGFILDGFPRT--E----------ILEGVTDIDLVINLKLREEALLAKCLGR 180 (289)
Q Consensus 134 ~~-~--------------------~~~~~g~Ildg~p~~--~----------~l~~~~~~d~vI~Ld~~~e~l~~Rl~~R 180 (289)
.. . ....+-+|++|.... . .+..+ .|.+||++++.+.+++|+..|
T Consensus 170 g~~~v~~P~yd~~~~~r~~~~~~~v~~~dIVIvEGi~lL~~~~~~~~~~~~~~l~~~--~D~~I~Vda~~d~~~~R~i~R 247 (321)
T 3tqc_A 170 GQRNVRIPVYSHHYYDIVRGQYEIVDQPDIVILEGLNILQTGVRKTLQQLQVFVSDF--FDFSLFVDAQAQVIQKWYIDR 247 (321)
T ss_dssp TCSSEEEEEEETTTTEEEEEEEEEECSCSEEEEECTTTTCCCCCSSSSSCCCCGGGG--CSEEEEEECCHHHHHHHHHHH
T ss_pred cccccccchhhhhccccccCceeeccCCCEEEEEccccccccccccccchhhhhhhh--cCeEEEEECCHHHHHHHHHHh
Confidence 21 0 001345678883322 1 12222 699999999999999999988
Q ss_pred c
Q 022951 181 R 181 (289)
Q Consensus 181 ~ 181 (289)
.
T Consensus 248 d 248 (321)
T 3tqc_A 248 V 248 (321)
T ss_dssp H
T ss_pred c
Confidence 6
No 112
>3ch4_B Pmkase, phosphomevalonate kinase; parallel beta-sheet with the strand order 23145, walker A motif, cholesterol biosynthesis, lipid synthesis; 1.76A {Homo sapiens}
Probab=98.50 E-value=9.1e-07 Score=75.41 Aligned_cols=104 Identities=13% Similarity=0.137 Sum_probs=66.9
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhC---CCeeehHHHHHH-HHHc-CCccCHH------------HHHHHHHHHHHc-
Q 022951 73 KHVQWVFLGCPGVGKGTYASRLSNLLG---VPHIATGDLLDE-IVSQ-GKLVSDE------------IIINLLSKRLEA- 134 (289)
Q Consensus 73 ~~~~Ivl~GppGsGKSTlak~La~~lg---~~~i~~d~l~~~-~l~~-g~~v~~~------------~~~~ll~~~l~~- 134 (289)
.+++|+|+|.|||||+|+|+.|.+.+| +..+++++.+++ +... |-..... .+...- ..+..
T Consensus 10 ~~~II~itGk~~SGKd~va~~l~~~~g~~~~~vv~msD~iK~~~a~~~gl~~~~~l~~~~ykE~~R~~m~~~g-~~~R~~ 88 (202)
T 3ch4_B 10 PRLVLLFSGKRKSGKDFVTEALQSRLGADVCAVLRLSGPLKEQYAQEHGLNFQRLLDTSTYKEAFRKDMIRWG-EEKRQA 88 (202)
T ss_dssp CSEEEEEEECTTSSHHHHHHHHHHHHCTTTEEEECTHHHHHHHHHHTTTCCCC-------CCSSHHHHHHHHH-HHHHHH
T ss_pred CCEEEEEECCCCCChHHHHHHHHHHcCCCCceEEEccHHHHHHHHHHcCCCchhhcchhhhHHHHHHHHHHHH-HHHHhc
Confidence 567899999999999999999998885 678999999974 4332 2222211 111111 11110
Q ss_pred ---------ccccCCceEEEcCcccH---HHHhhcCC-CcEEEEEecCHHHHHHHH
Q 022951 135 ---------GEAKGEAGFILDGFPRT---EILEGVTD-IDLVINLKLREEALLAKC 177 (289)
Q Consensus 135 ---------~~~~~~~g~Ildg~p~~---~~l~~~~~-~d~vI~Ld~~~e~l~~Rl 177 (289)
........||+||.-.. +.++...+ .-.+|.+.+++++..+|.
T Consensus 89 d~~~~~~~~~~~~~~~~vII~dvR~~~Ev~~fr~~~g~~~~iirI~as~~~R~~Rg 144 (202)
T 3ch4_B 89 DPGFFCRKIVEGISQPIWLVSDTRRVSDIQWFREAYGAVTQTVRVVALEQSRQQRG 144 (202)
T ss_dssp CTTTTHHHHSBTCCCSEEEECCCCSHHHHHHHHHHHGGGEEEEEEEECHHHHHHTT
T ss_pred CchHHHHHHHHhcCCCcEEEeCCCCHHHHHHHHHhCCCcEEEEEEECCHHHHHHHh
Confidence 01111347999997666 55655332 245899999999999983
No 113
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=98.49 E-value=1.6e-06 Score=74.77 Aligned_cols=52 Identities=19% Similarity=0.250 Sum_probs=34.6
Q ss_pred cCCCcHHHHHHHHHHHHHhchHHHHHHHHcCcEEEEeCCCCcccHHHHHHHHhccCCcc
Q 022951 224 RSDDKEEVVRERLRIYNEKSRPVEEFYRRRGKLLEFDLPGGIPESWPKLLQALNLEDPE 282 (289)
Q Consensus 224 r~~d~~~~~~~rl~~y~~~~~~l~~~y~~~~~l~~id~~~~~~ev~~~i~~~l~~~~~~ 282 (289)
|..++++.+.+|+........ ++ ....++.+| .+.++.+.+|..+|..+..+
T Consensus 150 rG~~~~e~i~~rl~~a~~e~~----~~-~~~d~~i~N--d~l~~a~~~l~~ii~~~~~~ 201 (219)
T 1s96_A 150 RGQDSEEVIAKRMAQAVAEMS----HY-AEYDYLIVN--DDFDTALTDLKTIIRAERLR 201 (219)
T ss_dssp TSCSCHHHHHHHHHHHHHHHT----TG-GGSSEEEEC--SSHHHHHHHHHHHHHHHHTB
T ss_pred cCCCCHHHHHHHHHHHHHHHh----hc-cCCCEEEEC--cCHHHHHHHHHHHHHHHHhh
Confidence 335668889999987665432 22 223355554 48999999999999766443
No 114
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=98.48 E-value=5.4e-07 Score=74.88 Aligned_cols=26 Identities=27% Similarity=0.364 Sum_probs=23.1
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHHHhC
Q 022951 74 HVQWVFLGCPGVGKGTYASRLSNLLG 99 (289)
Q Consensus 74 ~~~Ivl~GppGsGKSTlak~La~~lg 99 (289)
..+++|+||+||||||+++.|+..+.
T Consensus 5 g~~i~i~GpsGsGKSTL~~~L~~~~~ 30 (180)
T 1kgd_A 5 RKTLVLLGAHGVGRRHIKNTLITKHP 30 (180)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 45789999999999999999998764
No 115
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=98.45 E-value=4.4e-06 Score=70.95 Aligned_cols=28 Identities=21% Similarity=0.323 Sum_probs=24.6
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHHHhC
Q 022951 72 GKHVQWVFLGCPGVGKGTYASRLSNLLG 99 (289)
Q Consensus 72 ~~~~~Ivl~GppGsGKSTlak~La~~lg 99 (289)
.++..|+|+||+||||||+++.|.+.+.
T Consensus 17 ~~g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 17 QGRKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp CSCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 3556889999999999999999998875
No 116
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=98.45 E-value=3.3e-07 Score=77.97 Aligned_cols=110 Identities=17% Similarity=0.145 Sum_probs=65.3
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHHHhC-----CCeeehHHHH--HHHHHc-------C--CccCHHHHHHHHHHHHHcc
Q 022951 72 GKHVQWVFLGCPGVGKGTYASRLSNLLG-----VPHIATGDLL--DEIVSQ-------G--KLVSDEIIINLLSKRLEAG 135 (289)
Q Consensus 72 ~~~~~Ivl~GppGsGKSTlak~La~~lg-----~~~i~~d~l~--~~~l~~-------g--~~v~~~~~~~ll~~~l~~~ 135 (289)
.++.+|.|+||+||||||+++.|+..+. ..++..|... .....+ + .......+...+.......
T Consensus 20 ~~g~~v~I~G~sGsGKSTl~~~l~~~~~~~g~~~g~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~ 99 (208)
T 3c8u_A 20 PGRQLVALSGAPGSGKSTLSNPLAAALSAQGLPAEVVPMDGFHLDNRLLEPRGLLPRKGAPETFDFEGFQRLCHALKHQE 99 (208)
T ss_dssp CSCEEEEEECCTTSCTHHHHHHHHHHHHHTTCCEEEEESGGGBCCHHHHGGGTCGGGTTSGGGBCHHHHHHHHHHHHHCS
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCceEEEecCCCcCCHHHHHHhcccccCCCCchhhHHHHHHHHHHHhcCC
Confidence 3567899999999999999999999874 4556654433 111110 1 1112233344443322210
Q ss_pred ----------------c---ccC-CceEEEcCccc-H--HHHhhc-CCCcEEEEEecCHHHHHHHHhccc
Q 022951 136 ----------------E---AKG-EAGFILDGFPR-T--EILEGV-TDIDLVINLKLREEALLAKCLGRR 181 (289)
Q Consensus 136 ----------------~---~~~-~~g~Ildg~p~-~--~~l~~~-~~~d~vI~Ld~~~e~l~~Rl~~R~ 181 (289)
. ... .+.||+||... . ..|..+ ...|.+||++++.+..++|+.+|.
T Consensus 100 ~i~~p~~d~~~~~~~g~~~~v~~~~~~~i~eg~~~l~de~~~~~l~~~~d~~i~vd~~~~~~~~R~~~R~ 169 (208)
T 3c8u_A 100 RVIYPLFDRARDIAIAGAAEVGPECRVAIIEGNYLLFDAPGWRDLTAIWDVSIRLEVPMADLEARLVQRW 169 (208)
T ss_dssp CEEEEEEETTTTEEEEEEEEECTTCCEEEEEESSTTBCSTTGGGGGGTCSEEEEECCCHHHHHHHHHHHH
T ss_pred ceecccCCccccCCCCCceEEcCCCcEEEECCceeccCCchhHHHHHhcCEEEEEeCCHHHHHHHHHHHH
Confidence 0 001 25788888322 1 112121 236999999999999999999885
No 117
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=98.43 E-value=5e-07 Score=86.48 Aligned_cols=40 Identities=20% Similarity=0.328 Sum_probs=31.6
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHHHhC-----CCeeehHHHHHH
Q 022951 72 GKHVQWVFLGCPGVGKGTYASRLSNLLG-----VPHIATGDLLDE 111 (289)
Q Consensus 72 ~~~~~Ivl~GppGsGKSTlak~La~~lg-----~~~i~~d~l~~~ 111 (289)
..+++|+|+|.|||||||+++.|++.++ ..+++.+++...
T Consensus 37 ~~~~~IvlvGlpGsGKSTia~~La~~l~~~~~~t~~~~~d~~r~~ 81 (469)
T 1bif_A 37 NCPTLIVMVGLPARGKTYISKKLTRYLNFIGVPTREFNVGQYRRD 81 (469)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHHH
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHHhccCCCceEEecchhhhh
Confidence 4568999999999999999999999875 345666666544
No 118
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=98.37 E-value=4.9e-07 Score=88.34 Aligned_cols=103 Identities=17% Similarity=0.072 Sum_probs=51.4
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhC------CCeeehHHHHHHHHHcCCccCHHHH---HHHHHHHHHcccccCCceE
Q 022951 73 KHVQWVFLGCPGVGKGTYASRLSNLLG------VPHIATGDLLDEIVSQGKLVSDEII---INLLSKRLEAGEAKGEAGF 143 (289)
Q Consensus 73 ~~~~Ivl~GppGsGKSTlak~La~~lg------~~~i~~d~l~~~~l~~g~~v~~~~~---~~ll~~~l~~~~~~~~~g~ 143 (289)
+..+|+|+|++||||||+++.|+..++ +.+++.|++... +..+..+..... ...+.......... +..+
T Consensus 368 ~G~iI~LiG~sGSGKSTLar~La~~L~~~~G~~i~~lDgD~~~~~-l~~~l~f~~~~r~~~~r~i~~v~q~l~~~-~~iv 445 (552)
T 3cr8_A 368 QGFTVFFTGLSGAGKSTLARALAARLMEMGGRCVTLLDGDIVRRH-LSSELGFSKAHRDVNVRRIGFVASEITKN-RGIA 445 (552)
T ss_dssp SCEEEEEEESSCHHHHHHHHHHHHHHHTTCSSCEEEESSHHHHHH-TTSSCCCSHHHHHHHHHHHHHHHHHHHHT-TCEE
T ss_pred cceEEEEECCCCChHHHHHHHHHHhhcccCCceEEEECCcHHHHh-hccccCCCHHHHHHHHHHHHHHHHHHHhc-CCEE
Confidence 457899999999999999999999884 345888777532 222222332211 11111111111111 2344
Q ss_pred EEcC-cccH-------HHHhhcCCCcEEEEEecCHHHHHHHHh
Q 022951 144 ILDG-FPRT-------EILEGVTDIDLVINLKLREEALLAKCL 178 (289)
Q Consensus 144 Ildg-~p~~-------~~l~~~~~~d~vI~Ld~~~e~l~~Rl~ 178 (289)
|..+ .+.. +.++... .-++|||++|.+++.+|..
T Consensus 446 i~~~~~~~~~~r~~~r~lL~~~g-~f~~V~L~~~~e~~~~R~~ 487 (552)
T 3cr8_A 446 ICAPIAPYRQTRRDVRAMIEAVG-GFVEIHVATPIETCESRDR 487 (552)
T ss_dssp EECCCCCCHHHHHHHHHHHHTTS-EEEEEEECC----------
T ss_pred EEecCCccHHHHHHHHHHHHHcC-CEEEEEEcCCHHHHHHhcc
Confidence 5444 3322 2333332 2379999999999999964
No 119
>1e2k_A Thymidine kinase; transferase, antiviral drug, enzyme-prodrug gene therapy, sugar ring pucker; HET: TMC; 1.7A {Herpes simplex virus} SCOP: c.37.1.1 PDB: 1e2i_A* 1e2h_A* 1e2m_A* 1e2n_A* 1e2p_A* 1ki2_A* 1ki3_A* 1ki4_A* 1ki6_B* 1ki7_A* 1ki8_A* 3rdp_A* 2ki5_A* 1kim_A* 1qhi_A* 1p7c_A* 1vtk_A* 2vtk_A* 3vtk_A* 3f0t_A* ...
Probab=98.31 E-value=3e-06 Score=77.62 Aligned_cols=27 Identities=26% Similarity=0.199 Sum_probs=22.4
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhC
Q 022951 73 KHVQWVFLGCPGVGKGTYASRLSNLLG 99 (289)
Q Consensus 73 ~~~~Ivl~GppGsGKSTlak~La~~lg 99 (289)
+.++|+|.|+.||||||+++.|++.+.
T Consensus 3 ~~~fI~~EG~dGsGKTT~~~~La~~L~ 29 (331)
T 1e2k_A 3 TLLRVYIDGPHGMGKTTTTQLLVALGS 29 (331)
T ss_dssp EEEEEEECSCTTSSHHHHHHHHTC---
T ss_pred ccEEEEEECCCCCCHHHHHHHHHHHhh
Confidence 457899999999999999999998874
No 120
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=98.31 E-value=1.8e-06 Score=78.10 Aligned_cols=108 Identities=22% Similarity=0.250 Sum_probs=63.9
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHHHhC-------CCeeehHHHH------HH--HHHc-C--CccCHHHHHHHHHHHHH
Q 022951 72 GKHVQWVFLGCPGVGKGTYASRLSNLLG-------VPHIATGDLL------DE--IVSQ-G--KLVSDEIIINLLSKRLE 133 (289)
Q Consensus 72 ~~~~~Ivl~GppGsGKSTlak~La~~lg-------~~~i~~d~l~------~~--~l~~-g--~~v~~~~~~~ll~~~l~ 133 (289)
.++.+|.|+|++||||||+++.|+..++ +.+++.|... .. ++.. + ...........+.....
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~~l~~~~~~G~i~vi~~d~~~~~~~~~~~~~~vq~~~~~~~~~~~~~~~~~~~l~~ 157 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQALLSRWPEHRRVELITTDGFLHPNQVLKERGLMKKKGFPESYDMHRLVKFVSDLKS 157 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGGBCCHHHHHHHTCTTCTTSGGGBCHHHHHHHHHHHTT
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHhhCCCCCeEEEEecCCccCcHHHHHhCCEeecCCCCCCccHHHHHHHHHHHhC
Confidence 4567899999999999999999999876 4555555432 11 1111 1 11122223333322111
Q ss_pred ccc---------------------ccCCceEEEcCcccH-H-----------HHhhcCCCcEEEEEecCHHHHHHHHhcc
Q 022951 134 AGE---------------------AKGEAGFILDGFPRT-E-----------ILEGVTDIDLVINLKLREEALLAKCLGR 180 (289)
Q Consensus 134 ~~~---------------------~~~~~g~Ildg~p~~-~-----------~l~~~~~~d~vI~Ld~~~e~l~~Rl~~R 180 (289)
... ......+|+||.... . .+.. ..|.+||+++|.+..++|+..|
T Consensus 158 ~~~~i~~P~~~~~~~~~~~~~~~~~~~~~ivIlEG~~l~~~~~~~~~~~~~~~~~~--~~D~~i~V~~~~~~~~~R~~~R 235 (308)
T 1sq5_A 158 GVPNVTAPVYSHLIYDVIPDGDKTVVQPDILILEGLNVLQSGMDYPHDPHHVFVSD--FVDFSIYVDAPEDLLQTWYINR 235 (308)
T ss_dssp TCSCEEECCEETTTTEECTTCCEEEC-CCEEEEECTTTTCCGGGCTTSCCSSCGGG--GCSEEEEEECCHHHHHHHHHHH
T ss_pred CCCceecccccccccCcccccceecCCCCEEEECchhhCCCccccccccchHHHHH--hCCEEEEEECCHHHHHHHHHHH
Confidence 100 011346788883322 1 1222 2699999999999999999988
Q ss_pred c
Q 022951 181 R 181 (289)
Q Consensus 181 ~ 181 (289)
.
T Consensus 236 ~ 236 (308)
T 1sq5_A 236 F 236 (308)
T ss_dssp H
T ss_pred H
Confidence 4
No 121
>1of1_A Thymidine kinase; transferase, antiviral drug, enzyme- prodrug gene, DNA synthesis, ATP-binding; HET: SCT; 1.95A {Herpes simplex virus} SCOP: c.37.1.1
Probab=98.28 E-value=5e-06 Score=77.25 Aligned_cols=27 Identities=26% Similarity=0.199 Sum_probs=22.5
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhC
Q 022951 73 KHVQWVFLGCPGVGKGTYASRLSNLLG 99 (289)
Q Consensus 73 ~~~~Ivl~GppGsGKSTlak~La~~lg 99 (289)
+.++|+|.|+.||||||+++.|++.+.
T Consensus 48 ~~~fIt~EG~dGsGKTT~~~~Lae~L~ 74 (376)
T 1of1_A 48 TLLRVYIDGPHGMGKTTTTQLLVALGS 74 (376)
T ss_dssp EEEEEEECSSTTSSHHHHHHHHHC---
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHhh
Confidence 457899999999999999999999874
No 122
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=98.24 E-value=1.2e-05 Score=67.83 Aligned_cols=58 Identities=21% Similarity=0.180 Sum_probs=36.2
Q ss_pred cCccccCCCcHHHHHHHHHHHHHhchHHHHHHHHcCcEEEEeCCCCcccHHHHHHHHhccCC
Q 022951 219 SKLITRSDDKEEVVRERLRIYNEKSRPVEEFYRRRGKLLEFDLPGGIPESWPKLLQALNLED 280 (289)
Q Consensus 219 ~~L~~r~~d~~~~~~~rl~~y~~~~~~l~~~y~~~~~l~~id~~~~~~ev~~~i~~~l~~~~ 280 (289)
+++..+..++++.+++++..+...... .++.....++.++. +.++.+.+|.++|..+.
T Consensus 132 e~~~~~d~~~e~~i~~~l~~~~~~~~~--a~~~~~~D~iivnd--~le~a~~~l~~ii~~~~ 189 (198)
T 1lvg_A 132 QRLRLRNTETEESLAKRLAAARTDMES--SKEPGLFDLVIIND--DLDKAYATLKQALSEEI 189 (198)
T ss_dssp HHHHHHTCSCHHHHHHHHHHHHHHTTG--GGSTTTCSEEEECS--SHHHHHHHHHHHTHHHH
T ss_pred HHHHhcCCCCHHHHHHHHHHHHHHHHH--hhccCCceEEEECC--CHHHHHHHHHHHHHHHh
Confidence 444445567788999998877654311 10112233444443 69999999999997653
No 123
>1osn_A Thymidine kinase, VZV-TK; chickenpox, BVDU-MP, transferase; HET: BVP ADP; 3.20A {Human herpesvirus 3} SCOP: c.37.1.1
Probab=98.24 E-value=1.6e-06 Score=79.73 Aligned_cols=28 Identities=25% Similarity=0.224 Sum_probs=25.2
Q ss_pred CceEEEEEcCCCCCHHHHH-HHHHHHhCC
Q 022951 73 KHVQWVFLGCPGVGKGTYA-SRLSNLLGV 100 (289)
Q Consensus 73 ~~~~Ivl~GppGsGKSTla-k~La~~lg~ 100 (289)
+.++|+|.|+.||||||++ +.|++.++.
T Consensus 11 ~~~~I~iEG~~GaGKTT~~~~~L~~~l~~ 39 (341)
T 1osn_A 11 GVLRIYLDGAYGIGKTTAAEEFLHHFAIT 39 (341)
T ss_dssp EEEEEEEEESSSSCTTHHHHHHHHTTTTS
T ss_pred CceEEEEeCCCCCCHHHHHHHHHHHHHhh
Confidence 4689999999999999999 999998763
No 124
>3czp_A Putative polyphosphate kinase 2; PPK2, MCSG, PSI-2, structural protein structure initiative, midwest center for structural genomics; HET: MSE; 2.00A {Pseudomonas aeruginosa PAO1}
Probab=98.07 E-value=1.3e-05 Score=77.14 Aligned_cols=105 Identities=13% Similarity=0.031 Sum_probs=57.5
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHHHhCCCeeehHHHHHHHHHcCCccCHHHHHHHHHHHHHcccccCCceEEEcCcccH
Q 022951 72 GKHVQWVFLGCPGVGKGTYASRLSNLLGVPHIATGDLLDEIVSQGKLVSDEIIINLLSKRLEAGEAKGEAGFILDGFPRT 151 (289)
Q Consensus 72 ~~~~~Ivl~GppGsGKSTlak~La~~lg~~~i~~d~l~~~~l~~g~~v~~~~~~~ll~~~l~~~~~~~~~g~Ildg~p~~ 151 (289)
+.+++|+|.|..||||+|+.+.|.+.++-..+.+-.+ +.+-..+.....+.......... +..+|+|++..+
T Consensus 41 ~~~vlIvfEG~D~AGKg~~Ik~l~~~l~prg~~V~a~-------~~Pt~~E~~~~yl~R~~~~lP~~-G~IvIfdRSwYs 112 (500)
T 3czp_A 41 RFPVIILINGIEGAGKGETVKLLNEWMDPRLIEVQSF-------LRPSDEELERPPQWRFWRRLPPK-GRTGIFFGNWYS 112 (500)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHHSCGGGEEEEEC-------SSCCHHHHTSCTTHHHHHHCCCT-TCEEEEESCHHH
T ss_pred CCCEEEEEeCcCCCCHHHHHHHHHHhcCccCCeEEEe-------CCCChhhccCChhhhHHHhCCCC-CeEEEEeCchhh
Confidence 4679999999999999999999999985332221000 11111111001122222222222 556777763222
Q ss_pred -------------H----HHh----------hcCCCcEEEEEecCHHHHHHHHhcccccc
Q 022951 152 -------------E----ILE----------GVTDIDLVINLKLREEALLAKCLGRRICS 184 (289)
Q Consensus 152 -------------~----~l~----------~~~~~d~vI~Ld~~~e~l~~Rl~~R~~~~ 184 (289)
+ .++ .-..+++.+||+++.++..+|+..|..++
T Consensus 113 ~~~v~rv~g~~~~~~~~~~~~~i~~FE~~L~~~g~~i~KffL~is~eeq~kRl~~R~~~p 172 (500)
T 3czp_A 113 QMLYARVEGHIKEAKLDQAIDAAERFERMLCDEGALLFKFWFHLSKKQLKERLKALEKDP 172 (500)
T ss_dssp HHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHTTCEEEEEEEECCHHHHHHCC-------
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhcCCCeEEEEEEECCHHHHHHHHHHHhcCC
Confidence 1 111 11237899999999999999999886543
No 125
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=98.07 E-value=3.3e-06 Score=77.57 Aligned_cols=34 Identities=15% Similarity=0.195 Sum_probs=31.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhCCCeeehHHH
Q 022951 75 VQWVFLGCPGVGKGTYASRLSNLLGVPHIATGDL 108 (289)
Q Consensus 75 ~~Ivl~GppGsGKSTlak~La~~lg~~~i~~d~l 108 (289)
.+|+|+||+||||||+|+.|++.++..+|+.|++
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l~~~iis~Ds~ 41 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKFNGEIISGDSM 41 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTTEEEEECCSS
T ss_pred ceEEEECCCcCcHHHHHHHHHHHcCCceeccccc
Confidence 4789999999999999999999999999998877
No 126
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=98.05 E-value=1.9e-06 Score=78.64 Aligned_cols=35 Identities=23% Similarity=0.278 Sum_probs=32.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhCCCeeehHHHH
Q 022951 75 VQWVFLGCPGVGKGTYASRLSNLLGVPHIATGDLL 109 (289)
Q Consensus 75 ~~Ivl~GppGsGKSTlak~La~~lg~~~i~~d~l~ 109 (289)
..|+|+||+||||||+++.|+++++..+++.|.+.
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l~~~iis~Ds~q 40 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADALPCELISVDSAL 40 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHSCEEEEEECTTT
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCCcEEeccchh
Confidence 57999999999999999999999999999998764
No 127
>3czp_A Putative polyphosphate kinase 2; PPK2, MCSG, PSI-2, structural protein structure initiative, midwest center for structural genomics; HET: MSE; 2.00A {Pseudomonas aeruginosa PAO1}
Probab=97.95 E-value=1.5e-05 Score=76.73 Aligned_cols=102 Identities=16% Similarity=0.081 Sum_probs=63.8
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHHHhC---CCeeehHHHHHHHHHcCCccCHHHHHHHHHHHHHcccccCCceEEEcCc
Q 022951 72 GKHVQWVFLGCPGVGKGTYASRLSNLLG---VPHIATGDLLDEIVSQGKLVSDEIIINLLSKRLEAGEAKGEAGFILDGF 148 (289)
Q Consensus 72 ~~~~~Ivl~GppGsGKSTlak~La~~lg---~~~i~~d~l~~~~l~~g~~v~~~~~~~ll~~~l~~~~~~~~~g~Ildg~ 148 (289)
+.+++|+|.|..||||+|+.++|.+.++ +.++.+ +.+-..+.....+.......... +..+|+|.+
T Consensus 298 ~~~vlIvfEG~DaAGKg~~Ik~l~~~ldprg~~V~~~----------~~Pt~~E~~~~yl~R~~~~lP~~-G~i~IfDRs 366 (500)
T 3czp_A 298 QHSLVAVFEGNDAAGKGGAIRRVTDALDPRQYHIVPI----------AAPTEEERAQPYLWRFWRHIPAR-RQFTIFDRS 366 (500)
T ss_dssp GCEEEEEEEESTTSCHHHHHHHHHTTSCGGGCEEEEC----------CSCCHHHHTSCTTHHHHTTCCCT-TCEEEEESC
T ss_pred CCCEEEEEeccCCCCHHHHHHHHHHhcCccCCeEEEe----------CCCChhhhcchHHHHHHHhCCCC-CeEEEEeCc
Confidence 4689999999999999999999999884 333332 11111111111122223333322 567888863
Q ss_pred ccH-------------H----HHhh----------cCCCcEEEEEecCHHHHHHHHhcccccc
Q 022951 149 PRT-------------E----ILEG----------VTDIDLVINLKLREEALLAKCLGRRICS 184 (289)
Q Consensus 149 p~~-------------~----~l~~----------~~~~d~vI~Ld~~~e~l~~Rl~~R~~~~ 184 (289)
... + .++. ...+++.+||+++.++..+|+..|..++
T Consensus 367 wY~~~~v~rv~g~~~~~~~~~~~~~i~~FE~~L~~~g~~i~Kf~L~is~eeQ~~R~~~R~~~p 429 (500)
T 3czp_A 367 WYGRVLVERIEGFCAPADWLRAYGEINDFEEQLSEYGIIVVKFWLAIDKQTQMERFKEREKTP 429 (500)
T ss_dssp GGGGGTHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHTEEEEEEEEECCHHHHHHHHHHHHHSS
T ss_pred chhhHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhhCCCeEEEEEEECCHHHHHHHHHHHhcCC
Confidence 222 1 1111 1237899999999999999999987554
No 128
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=97.93 E-value=7.3e-05 Score=61.39 Aligned_cols=105 Identities=14% Similarity=0.138 Sum_probs=59.5
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhCCCeeehHHHHHHHHHc--CCccCHHHHHHHHHHHHHcccccCCceEEEcC-cc
Q 022951 73 KHVQWVFLGCPGVGKGTYASRLSNLLGVPHIATGDLLDEIVSQ--GKLVSDEIIINLLSKRLEAGEAKGEAGFILDG-FP 149 (289)
Q Consensus 73 ~~~~Ivl~GppGsGKSTlak~La~~lg~~~i~~d~l~~~~l~~--g~~v~~~~~~~ll~~~l~~~~~~~~~g~Ildg-~p 149 (289)
+.-+++|+||+||||||+++.+. .+...++.|.+. .++.. +...........+.......... +...++|. ++
T Consensus 8 ~gei~~l~G~nGsGKSTl~~~~~--~~~~~~~~d~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~ 83 (171)
T 4gp7_A 8 ELSLVVLIGSSGSGKSTFAKKHF--KPTEVISSDFCR-GLMSDDENDQTVTGAAFDVLHYIVSKRLQL-GKLTVVDATNV 83 (171)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHS--CGGGEEEHHHHH-HHHCSSTTCGGGHHHHHHHHHHHHHHHHHT-TCCEEEESCCC
T ss_pred CCEEEEEECCCCCCHHHHHHHHc--cCCeEEccHHHH-HHhcCcccchhhHHHHHHHHHHHHHHHHhC-CCeEEEECCCC
Confidence 45688999999999999999864 345666665443 33322 22222222122121111111111 23566776 33
Q ss_pred cH-------HHHhhcCCCcEEEEEecCHHHHHHHHhccc
Q 022951 150 RT-------EILEGVTDIDLVINLKLREEALLAKCLGRR 181 (289)
Q Consensus 150 ~~-------~~l~~~~~~d~vI~Ld~~~e~l~~Rl~~R~ 181 (289)
.. .....+...-.+++||-|...+-.|...|.
T Consensus 84 ~s~g~~qrv~iAral~~~p~~lllDEPt~~Ld~~~~~R~ 122 (171)
T 4gp7_A 84 QESARKPLIEMAKDYHCFPVAVVFNLPEKVCQERNKNRT 122 (171)
T ss_dssp SHHHHHHHHHHHHHTTCEEEEEEECCCHHHHHHHHHTCS
T ss_pred CHHHHHHHHHHHHHcCCcEEEEEEeCCHHHHHHHHhccc
Confidence 33 222333334568999999999999988774
No 129
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=97.92 E-value=5.9e-06 Score=75.02 Aligned_cols=35 Identities=20% Similarity=0.191 Sum_probs=32.1
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHHHhCCCeeehHHH
Q 022951 74 HVQWVFLGCPGVGKGTYASRLSNLLGVPHIATGDL 108 (289)
Q Consensus 74 ~~~Ivl~GppGsGKSTlak~La~~lg~~~i~~d~l 108 (289)
+.+|+|+||+||||||++..|++.++..+|+.|.+
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~~~~~iis~Ds~ 37 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKRLNGEVISGDSM 37 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHTTTEEEEECCGG
T ss_pred CcEEEEECCCcCCHHHHHHHHHHhCccceeecCcc
Confidence 45789999999999999999999999999998776
No 130
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=97.90 E-value=0.00015 Score=62.05 Aligned_cols=55 Identities=15% Similarity=0.109 Sum_probs=34.4
Q ss_pred ccCCCcHHHHHHHHHHHHHhchHHHHHHHHcCcEEEEeCCCCcccHHHHHHHHhccCCcc
Q 022951 223 TRSDDKEEVVRERLRIYNEKSRPVEEFYRRRGKLLEFDLPGGIPESWPKLLQALNLEDPE 282 (289)
Q Consensus 223 ~r~~d~~~~~~~rl~~y~~~~~~l~~~y~~~~~l~~id~~~~~~ev~~~i~~~l~~~~~~ 282 (289)
.+..++++.+.+++..+..... +. + -.....+.++ .+.++.+..+.+++..+..+
T Consensus 157 ~~d~~~~~~i~~~l~~~~~~~~-~~-h-~~~~d~iiv~--~~~~ea~~~~~~ii~~~~~~ 211 (218)
T 1z6g_A 157 TRNTENQEQIQKRMEQLNIELH-EA-N-LLNFNLSIIN--DDLTLTYQQLKNYLLNSYIH 211 (218)
T ss_dssp HTCCCCHHHHHHHHHHHHHHHH-HH-T-TSCCSEEEEC--SSHHHHHHHHHHHHHHHTTC
T ss_pred hcCCCCHHHHHHHHHHHHHHHH-hh-c-ccCCCEEEEC--CCHHHHHHHHHHHHHHHHHh
Confidence 3345678888888887766533 11 0 0223344443 36999999999999876543
No 131
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=97.81 E-value=1.2e-05 Score=72.80 Aligned_cols=35 Identities=23% Similarity=0.276 Sum_probs=31.8
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHHHhCCCeeehHHH
Q 022951 74 HVQWVFLGCPGVGKGTYASRLSNLLGVPHIATGDL 108 (289)
Q Consensus 74 ~~~Ivl~GppGsGKSTlak~La~~lg~~~i~~d~l 108 (289)
+..|+|+||+||||||++..|++.++..+++.|.+
T Consensus 10 ~~~i~i~GptgsGKt~la~~La~~~~~~iis~Ds~ 44 (316)
T 3foz_A 10 PKAIFLMGPTASGKTALAIELRKILPVELISVDSA 44 (316)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHSCEEEEECCTT
T ss_pred CcEEEEECCCccCHHHHHHHHHHhCCCcEEecccc
Confidence 46789999999999999999999999999988765
No 132
>3rhf_A Putative polyphosphate kinase 2 family protein; PSI-biology, MCSG, structural genomics, midwest center for S genomics; HET: PGE FLC PG4; 2.45A {Arthrobacter aurescens}
Probab=97.73 E-value=0.00023 Score=63.46 Aligned_cols=163 Identities=12% Similarity=0.026 Sum_probs=92.5
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHHHhCCCeeehHHHHHHHHHcCCccCHHHHHHHHHHHHHcccccCCceEEEcC--cc
Q 022951 72 GKHVQWVFLGCPGVGKGTYASRLSNLLGVPHIATGDLLDEIVSQGKLVSDEIIINLLSKRLEAGEAKGEAGFILDG--FP 149 (289)
Q Consensus 72 ~~~~~Ivl~GppGsGKSTlak~La~~lg~~~i~~d~l~~~~l~~g~~v~~~~~~~ll~~~l~~~~~~~~~g~Ildg--~p 149 (289)
..+++|+|.|..||||+++.++|.+.++-.++.+-.+ +.+...+.....+.......... +...|+|+ |.
T Consensus 73 ~~~vlIvfEG~DaAGKgg~Ik~l~~~ldPRg~~V~a~-------~~Pt~eE~~~~ylwR~~~~lP~~-G~I~IFdRSwY~ 144 (289)
T 3rhf_A 73 PKRLLLILQAMDTAGKGGIVSHVVGAMDPQGVQLTAF-------KAPTDEEKSHDFLWRIEKQVPAA-GMVGVFDRSQYE 144 (289)
T ss_dssp CCEEEEEEEECTTSSHHHHHHHHHHHSCGGGEEEEEC-------CSCCHHHHTSCTTHHHHTTCCCT-TCEEEEESCGGG
T ss_pred CCcEEEEEECCCCCChHHHHHHHHHhcCcCceEEEEC-------CCCChhhhcCCHHHHHHHhCCCC-CeEEEEeCchhh
Confidence 3689999999999999999999999986333322000 22221221111122233333333 56778886 22
Q ss_pred cH-----------HH----------Hhhc----CCCcEEEEEecCHHHHHHHHhcccccccCCCccccccccccCCCCCC
Q 022951 150 RT-----------EI----------LEGV----TDIDLVINLKLREEALLAKCLGRRICSECGGNYNVACIDIKGENGNP 204 (289)
Q Consensus 150 ~~-----------~~----------l~~~----~~~d~vI~Ld~~~e~l~~Rl~~R~~~~~~g~~y~~~~~~~~~~~~~~ 204 (289)
+. +. +++. +-..+-+||+++.+...+|+..|..++.. .+.+
T Consensus 145 ~vlverV~g~~~~~~~~~~~~~I~~FE~~L~~~G~~ilKf~LhIskeEQ~kR~~~R~~dP~k--~WK~------------ 210 (289)
T 3rhf_A 145 DVLIHRVHGWADAAELERRYAAINDFESRLTEQGTTIVKVMLNISKDEQKKRLIARLDDPSK--HWKY------------ 210 (289)
T ss_dssp GGTHHHHTTSSCHHHHHHHHHHHHHHHHHHHHTTEEEEEEEEECCHHHHHHHHHHHHHCGGG--GGGC------------
T ss_pred hHhHHHHhcCCCHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEECCHHHHHHHHHHHhcCCcc--cccC------------
Confidence 21 11 1111 11345699999999999999998755411 1111
Q ss_pred CCCCCCCCCCCccccCccccCCCcHHHH--HHHHHHHHHhchHHHHHHHH-cCcEEEEeCCCCccc---HHHHHHHHhcc
Q 022951 205 GMYMGPLLPPPHCASKLITRSDDKEEVV--RERLRIYNEKSRPVEEFYRR-RGKLLEFDLPGGIPE---SWPKLLQALNL 278 (289)
Q Consensus 205 ~~~~~~~~~~~~~~~~L~~r~~d~~~~~--~~rl~~y~~~~~~l~~~y~~-~~~l~~id~~~~~~e---v~~~i~~~l~~ 278 (289)
++..+ .++.+.|.+..+.++..-+. ...|+.|+++..--- +.+.|++.|+.
T Consensus 211 -----------------------s~~D~~~r~~wd~Y~~a~e~ml~~T~t~~APW~VV~addK~~arl~v~~~ll~~Le~ 267 (289)
T 3rhf_A 211 -----------------------SRGDLAERAYWDDYMDAYSVAFEKTSTEIAPWHVVPANKKWYARIAVQQLLLDALGG 267 (289)
T ss_dssp -----------------------CHHHHHHHTTHHHHHHHHHHHHHHHCCSSSCEEEEECSSHHHHHHHHHHHHHHHHHT
T ss_pred -----------------------CHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCeEEEeCCCHHHHHHHHHHHHHHHHHH
Confidence 12222 23456666666655554322 346999998854332 56666666655
Q ss_pred C
Q 022951 279 E 279 (289)
Q Consensus 279 ~ 279 (289)
.
T Consensus 268 ~ 268 (289)
T 3rhf_A 268 L 268 (289)
T ss_dssp T
T ss_pred c
Confidence 4
No 133
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=97.70 E-value=2.2e-05 Score=73.57 Aligned_cols=34 Identities=24% Similarity=0.338 Sum_probs=31.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhCCCeeehHHH
Q 022951 75 VQWVFLGCPGVGKGTYASRLSNLLGVPHIATGDL 108 (289)
Q Consensus 75 ~~Ivl~GppGsGKSTlak~La~~lg~~~i~~d~l 108 (289)
.+|+|+||+||||||++..|++.++..+|+.|.+
T Consensus 3 ~~i~i~GptgsGKttla~~La~~~~~~iis~Ds~ 36 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLAQKFNGEVINSDSM 36 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHHHHHTEEEEECCTT
T ss_pred cEEEEECcchhhHHHHHHHHHHHCCCeEeecCcc
Confidence 5789999999999999999999999989988764
No 134
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=97.65 E-value=3.3e-05 Score=69.16 Aligned_cols=37 Identities=22% Similarity=0.283 Sum_probs=29.6
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhCCCee--ehHHHH
Q 022951 73 KHVQWVFLGCPGVGKGTYASRLSNLLGVPHI--ATGDLL 109 (289)
Q Consensus 73 ~~~~Ivl~GppGsGKSTlak~La~~lg~~~i--~~d~l~ 109 (289)
.+..++|.||||+|||++|+.||+.+|.+++ +..++.
T Consensus 35 ~p~~lLl~GppGtGKT~la~aiA~~l~~~~i~v~~~~l~ 73 (293)
T 3t15_A 35 VPLILGIWGGKGQGKSFQCELVFRKMGINPIMMSAGELE 73 (293)
T ss_dssp CCSEEEEEECTTSCHHHHHHHHHHHHTCCCEEEEHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCCEEEEeHHHhh
Confidence 3456788999999999999999999987665 444544
No 135
>1dek_A Deoxynucleoside monophosphate kinase; transferase, phosphotransferase; HET: DGP; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1 PDB: 1del_A*
Probab=97.58 E-value=5e-05 Score=66.44 Aligned_cols=35 Identities=14% Similarity=0.065 Sum_probs=32.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhCCCeeehHHHH
Q 022951 75 VQWVFLGCPGVGKGTYASRLSNLLGVPHIATGDLL 109 (289)
Q Consensus 75 ~~Ivl~GppGsGKSTlak~La~~lg~~~i~~d~l~ 109 (289)
++|.|+|++||||||+++.|.+.+|++++..++.+
T Consensus 2 ~~i~ltG~~~sGK~tv~~~l~~~~g~~~~~~~~~~ 36 (241)
T 1dek_A 2 KLIFLSGVKRSGKDTTADFIMSNYSAVKYQLAGPI 36 (241)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHSCEEECCTTHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCeEEecChHH
Confidence 68999999999999999999999999999987766
No 136
>1kjw_A Postsynaptic density protein 95; protein-protein interaction, scaffold, neuropeptide; 1.80A {Rattus norvegicus} SCOP: b.34.2.1 c.37.1.1 PDB: 1jxm_A* 1jxo_A
Probab=97.58 E-value=0.0022 Score=57.60 Aligned_cols=45 Identities=11% Similarity=0.086 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHhchHHHHHHHHcCcEEEEeCCCCcccHHHHHHHHhccCC
Q 022951 230 EVVRERLRIYNEKSRPVEEFYRRRGKLLEFDLPGGIPESWPKLLQALNLED 280 (289)
Q Consensus 230 ~~~~~rl~~y~~~~~~l~~~y~~~~~l~~id~~~~~~ev~~~i~~~l~~~~ 280 (289)
+.+++|++...+. +.-|.....++ |.+ .++++.+.+|.++|..+.
T Consensus 239 ~~i~~rl~~a~~~----e~~~~~~fd~v-ivN-d~le~a~~~l~~ii~~~~ 283 (295)
T 1kjw_A 239 EQARKAFDRATKL----EQEFTECFSAI-VEG-DSFEEIYHKVKRVIEDLS 283 (295)
T ss_dssp HHHHHHHHHHHHH----HHHHGGGCSEE-ECC-SSHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHH----HHhccccCeEE-EEC-cCHHHHHHHHHHHHHhcc
Confidence 5578888877431 11122233344 443 389999999999997654
No 137
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.50 E-value=6.7e-05 Score=71.04 Aligned_cols=32 Identities=19% Similarity=0.227 Sum_probs=28.4
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhCCCeee
Q 022951 73 KHVQWVFLGCPGVGKGTYASRLSNLLGVPHIA 104 (289)
Q Consensus 73 ~~~~Ivl~GppGsGKSTlak~La~~lg~~~i~ 104 (289)
.+.-|+|.||||||||++|+.+|..++.+++.
T Consensus 214 ~prGvLLyGPPGTGKTllAkAiA~e~~~~f~~ 245 (434)
T 4b4t_M 214 APKGALMYGPPGTGKTLLARACAAQTNATFLK 245 (434)
T ss_dssp CCCEEEEESCTTSSHHHHHHHHHHHHTCEEEE
T ss_pred CCCeeEEECcCCCCHHHHHHHHHHHhCCCEEE
Confidence 35679999999999999999999999987765
No 138
>3tvt_A Disks large 1 tumor suppressor protein; DLG, SRC-homology-3, guanylate kinase, phosphorylation-depen cell membrane; 1.60A {Drosophila melanogaster} PDB: 3uat_A*
Probab=97.49 E-value=0.0014 Score=58.74 Aligned_cols=49 Identities=10% Similarity=0.068 Sum_probs=29.4
Q ss_pred CCCcHHHHHHHHHHHHHhchHHHHHHHHcCcEEEEeCCCCcccHHHHHHHHhccCCcc
Q 022951 225 SDDKEEVVRERLRIYNEKSRPVEEFYRRRGKLLEFDLPGGIPESWPKLLQALNLEDPE 282 (289)
Q Consensus 225 ~~d~~~~~~~rl~~y~~~~~~l~~~y~~~~~l~~id~~~~~~ev~~~i~~~l~~~~~~ 282 (289)
.++..+.+..|+...... |.+...++.+ +.++++.+.+|.++|..+..+
T Consensus 232 ~~e~~~~~~~r~~k~e~e-------~~~~fD~vIv--Nddle~a~~~l~~iI~~e~~~ 280 (292)
T 3tvt_A 232 TEEQAKKTYERAIKMEQE-------FGEYFTGVVQ--GDTIEEIYSKVKSMIWSQSGP 280 (292)
T ss_dssp CTTHHHHHHHHHHHHHHH-------HTTTCSEEEC--CSSHHHHHHHHHHHHHHHTCS
T ss_pred CchhHHHHHHHHHHHHHh-------hhhhCCEEEE--CcCHHHHHHHHHHHHHHhhCC
Confidence 345555565555433322 2222334444 347999999999999887643
No 139
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=97.47 E-value=5e-05 Score=73.36 Aligned_cols=35 Identities=9% Similarity=-0.005 Sum_probs=30.5
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhCC-------CeeehHH
Q 022951 73 KHVQWVFLGCPGVGKGTYASRLSNLLGV-------PHIATGD 107 (289)
Q Consensus 73 ~~~~Ivl~GppGsGKSTlak~La~~lg~-------~~i~~d~ 107 (289)
+.+.|+|+|++||||||+|+.|+++++. .+++.|+
T Consensus 394 ~~~~I~l~GlsGsGKSTIa~~La~~L~~~~g~r~~~~lDgD~ 435 (511)
T 1g8f_A 394 QGFSIVLGNSLTVSREQLSIALLSTFLQFGGGRYYKIFEHNN 435 (511)
T ss_dssp CCEEEEECTTCCSCHHHHHHHHHHHHTTSCSCCCEEECCCTT
T ss_pred cceEEEecccCCCCHHHHHHHHHHHHHHhhcCcceEEecCCC
Confidence 4588999999999999999999999986 5677655
No 140
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.47 E-value=7.9e-05 Score=70.64 Aligned_cols=32 Identities=25% Similarity=0.369 Sum_probs=28.3
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhCCCeee
Q 022951 73 KHVQWVFLGCPGVGKGTYASRLSNLLGVPHIA 104 (289)
Q Consensus 73 ~~~~Ivl~GppGsGKSTlak~La~~lg~~~i~ 104 (289)
.+.-|+|.||||||||++|+.||..+|++++.
T Consensus 214 ~prGvLL~GPPGtGKTllAkAiA~e~~~~~~~ 245 (437)
T 4b4t_L 214 PPKGVLLYGPPGTGKTLLAKAVAATIGANFIF 245 (437)
T ss_dssp CCCEEEEESCTTSSHHHHHHHHHHHHTCEEEE
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHhCCCEEE
Confidence 34668999999999999999999999987765
No 141
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.47 E-value=8e-05 Score=70.41 Aligned_cols=32 Identities=22% Similarity=0.297 Sum_probs=28.1
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHHHhCCCeeeh
Q 022951 74 HVQWVFLGCPGVGKGTYASRLSNLLGVPHIAT 105 (289)
Q Consensus 74 ~~~Ivl~GppGsGKSTlak~La~~lg~~~i~~ 105 (289)
+.=|+|.||||||||++|+.+|..++++++.+
T Consensus 206 prGiLL~GPPGtGKT~lakAiA~~~~~~~~~v 237 (428)
T 4b4t_K 206 PRGVLLYGPPGTGKTMLVKAVANSTKAAFIRV 237 (428)
T ss_dssp CCEEEEESCTTTTHHHHHHHHHHHHTCEEEEE
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhCCCeEEE
Confidence 45589999999999999999999999877653
No 142
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=97.46 E-value=0.0001 Score=63.92 Aligned_cols=31 Identities=32% Similarity=0.451 Sum_probs=27.2
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHHHhCCCeee
Q 022951 74 HVQWVFLGCPGVGKGTYASRLSNLLGVPHIA 104 (289)
Q Consensus 74 ~~~Ivl~GppGsGKSTlak~La~~lg~~~i~ 104 (289)
+.-++|.||||+|||++|+.|++.++.+++.
T Consensus 39 ~~~vll~G~~GtGKT~la~~la~~~~~~~~~ 69 (262)
T 2qz4_A 39 PKGALLLGPPGCGKTLLAKAVATEAQVPFLA 69 (262)
T ss_dssp CCEEEEESCTTSSHHHHHHHHHHHHTCCEEE
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhCCCEEE
Confidence 3458899999999999999999999877764
No 143
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.45 E-value=7.5e-05 Score=69.97 Aligned_cols=32 Identities=22% Similarity=0.305 Sum_probs=28.2
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHHHhCCCeeeh
Q 022951 74 HVQWVFLGCPGVGKGTYASRLSNLLGVPHIAT 105 (289)
Q Consensus 74 ~~~Ivl~GppGsGKSTlak~La~~lg~~~i~~ 105 (289)
+.-|+|.||||||||++|+.+|..++.+++.+
T Consensus 182 prGvLL~GPPGTGKTllAkAiA~e~~~~f~~v 213 (405)
T 4b4t_J 182 PKGVILYGPPGTGKTLLARAVAHHTDCKFIRV 213 (405)
T ss_dssp CCCEEEESCSSSSHHHHHHHHHHHHTCEEEEE
T ss_pred CCceEEeCCCCCCHHHHHHHHHHhhCCCceEE
Confidence 45589999999999999999999999887653
No 144
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=97.44 E-value=9.8e-05 Score=64.27 Aligned_cols=31 Identities=26% Similarity=0.410 Sum_probs=26.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhCCCeeeh
Q 022951 75 VQWVFLGCPGVGKGTYASRLSNLLGVPHIAT 105 (289)
Q Consensus 75 ~~Ivl~GppGsGKSTlak~La~~lg~~~i~~ 105 (289)
.-++|.||||+||||+++.|+..++.+++.+
T Consensus 46 ~~vll~G~~GtGKT~la~~la~~~~~~~~~i 76 (257)
T 1lv7_A 46 KGVLMVGPPGTGKTLLAKAIAGEAKVPFFTI 76 (257)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHTCCEEEE
T ss_pred CeEEEECcCCCCHHHHHHHHHHHcCCCEEEE
Confidence 3489999999999999999999998766543
No 145
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.39 E-value=0.00015 Score=59.52 Aligned_cols=37 Identities=32% Similarity=0.413 Sum_probs=29.9
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHHHh----C--CCeeehHHHHH
Q 022951 74 HVQWVFLGCPGVGKGTYASRLSNLL----G--VPHIATGDLLD 110 (289)
Q Consensus 74 ~~~Ivl~GppGsGKSTlak~La~~l----g--~~~i~~d~l~~ 110 (289)
...++|+||+|+||||+++.|+..+ | +.+++..+++.
T Consensus 38 g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~~~~~~~~~~~ 80 (180)
T 3ec2_A 38 GKGLTFVGSPGVGKTHLAVATLKAIYEKKGIRGYFFDTKDLIF 80 (180)
T ss_dssp CCEEEECCSSSSSHHHHHHHHHHHHHHHSCCCCCEEEHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHHcCCeEEEEEHHHHHH
Confidence 4578999999999999999999876 3 45677777663
No 146
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=97.38 E-value=0.0001 Score=66.03 Aligned_cols=36 Identities=31% Similarity=0.417 Sum_probs=29.3
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHHHhCCCeee--hHHHH
Q 022951 74 HVQWVFLGCPGVGKGTYASRLSNLLGVPHIA--TGDLL 109 (289)
Q Consensus 74 ~~~Ivl~GppGsGKSTlak~La~~lg~~~i~--~d~l~ 109 (289)
+..++|.||||+||||+|+.|+..++..++. ..++.
T Consensus 49 ~~~vLL~Gp~GtGKT~la~ala~~~~~~~i~v~~~~l~ 86 (301)
T 3cf0_A 49 SKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELL 86 (301)
T ss_dssp CSEEEEECSSSSSHHHHHHHHHHHTTCEEEEECHHHHH
T ss_pred CceEEEECCCCcCHHHHHHHHHHHhCCCEEEEEhHHHH
Confidence 4568999999999999999999999876654 44544
No 147
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=97.38 E-value=0.00015 Score=63.62 Aligned_cols=33 Identities=24% Similarity=0.351 Sum_probs=28.9
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhCCCeeeh
Q 022951 73 KHVQWVFLGCPGVGKGTYASRLSNLLGVPHIAT 105 (289)
Q Consensus 73 ~~~~Ivl~GppGsGKSTlak~La~~lg~~~i~~ 105 (289)
.+..++|.||||+|||++|+.|++.++.+++..
T Consensus 63 ~~~~vLl~G~~GtGKT~la~~ia~~~~~~~~~i 95 (272)
T 1d2n_A 63 PLVSVLLEGPPHSGKTALAAKIAEESNFPFIKI 95 (272)
T ss_dssp SEEEEEEECSTTSSHHHHHHHHHHHHTCSEEEE
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHhCCCEEEE
Confidence 456789999999999999999999999887654
No 148
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=97.37 E-value=0.00013 Score=67.02 Aligned_cols=32 Identities=31% Similarity=0.499 Sum_probs=28.2
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHHHhCCCeeeh
Q 022951 74 HVQWVFLGCPGVGKGTYASRLSNLLGVPHIAT 105 (289)
Q Consensus 74 ~~~Ivl~GppGsGKSTlak~La~~lg~~~i~~ 105 (289)
+..++|.||||+|||++|+.|++.++.+++.+
T Consensus 51 ~~~vll~GppGtGKT~la~~ia~~~~~~~~~~ 82 (363)
T 3hws_A 51 KSNILLIGPTGSGKTLLAETLARLLDVPFTMA 82 (363)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHTTCCEEEE
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHcCCCEEEe
Confidence 34578999999999999999999999888765
No 149
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=97.36 E-value=0.00013 Score=64.27 Aligned_cols=31 Identities=23% Similarity=0.307 Sum_probs=27.1
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHHHhCCCeee
Q 022951 74 HVQWVFLGCPGVGKGTYASRLSNLLGVPHIA 104 (289)
Q Consensus 74 ~~~Ivl~GppGsGKSTlak~La~~lg~~~i~ 104 (289)
+..++|.||||+|||++++.|++.++..++.
T Consensus 51 ~~~~ll~G~~GtGKT~la~~la~~~~~~~~~ 81 (285)
T 3h4m_A 51 PKGILLYGPPGTGKTLLAKAVATETNATFIR 81 (285)
T ss_dssp CSEEEEESSSSSSHHHHHHHHHHHTTCEEEE
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHhCCCEEE
Confidence 3458999999999999999999999877654
No 150
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=97.36 E-value=0.00013 Score=64.72 Aligned_cols=31 Identities=19% Similarity=0.305 Sum_probs=27.0
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHHHhCCCeee
Q 022951 74 HVQWVFLGCPGVGKGTYASRLSNLLGVPHIA 104 (289)
Q Consensus 74 ~~~Ivl~GppGsGKSTlak~La~~lg~~~i~ 104 (289)
+..++|.||||+||||+|+.|++.++.+++.
T Consensus 54 ~~~vll~Gp~GtGKT~la~~la~~~~~~~~~ 84 (297)
T 3b9p_A 54 AKGLLLFGPPGNGKTLLARAVATECSATFLN 84 (297)
T ss_dssp CSEEEEESSSSSCHHHHHHHHHHHTTCEEEE
T ss_pred CCeEEEECcCCCCHHHHHHHHHHHhCCCeEE
Confidence 4568999999999999999999999876654
No 151
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=97.35 E-value=0.00011 Score=61.00 Aligned_cols=26 Identities=35% Similarity=0.626 Sum_probs=23.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhCC
Q 022951 75 VQWVFLGCPGVGKGTYASRLSNLLGV 100 (289)
Q Consensus 75 ~~Ivl~GppGsGKSTlak~La~~lg~ 100 (289)
|+++|+||+||||||+.+.|+..+++
T Consensus 1 ~~i~l~G~nGsGKTTLl~~l~g~l~i 26 (178)
T 1ye8_A 1 MKIIITGEPGVGKTTLVKKIVERLGK 26 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHGG
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 57899999999999999999998864
No 152
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.34 E-value=0.00012 Score=69.68 Aligned_cols=32 Identities=25% Similarity=0.320 Sum_probs=28.6
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhCCCeee
Q 022951 73 KHVQWVFLGCPGVGKGTYASRLSNLLGVPHIA 104 (289)
Q Consensus 73 ~~~~Ivl~GppGsGKSTlak~La~~lg~~~i~ 104 (289)
.+.-|+|.||||+|||++|+.||..++.+++.
T Consensus 242 pprGILLyGPPGTGKTlLAkAiA~e~~~~fi~ 273 (467)
T 4b4t_H 242 PPKGILLYGPPGTGKTLCARAVANRTDATFIR 273 (467)
T ss_dssp CCSEEEECSCTTSSHHHHHHHHHHHHTCEEEE
T ss_pred CCCceEeeCCCCCcHHHHHHHHHhccCCCeEE
Confidence 45678999999999999999999999987765
No 153
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=97.33 E-value=0.00011 Score=69.74 Aligned_cols=33 Identities=33% Similarity=0.508 Sum_probs=29.1
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHHHhCCCeeehH
Q 022951 74 HVQWVFLGCPGVGKGTYASRLSNLLGVPHIATG 106 (289)
Q Consensus 74 ~~~Ivl~GppGsGKSTlak~La~~lg~~~i~~d 106 (289)
+..|+|+||||+||||+|+.||+.++.+++..+
T Consensus 50 ~~~iLl~GppGtGKT~lar~lA~~l~~~~~~v~ 82 (444)
T 1g41_A 50 PKNILMIGPTGVGKTEIARRLAKLANAPFIKVE 82 (444)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEE
T ss_pred CceEEEEcCCCCCHHHHHHHHHHHcCCCceeec
Confidence 345899999999999999999999998887653
No 154
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=97.33 E-value=0.00078 Score=55.84 Aligned_cols=22 Identities=41% Similarity=0.554 Sum_probs=20.8
Q ss_pred EEEEcCCCCCHHHHHHHHHHHh
Q 022951 77 WVFLGCPGVGKGTYASRLSNLL 98 (289)
Q Consensus 77 Ivl~GppGsGKSTlak~La~~l 98 (289)
++|.||+|+|||++++.+++.+
T Consensus 41 ~ll~G~~G~GKT~l~~~l~~~~ 62 (226)
T 2chg_A 41 LLFSGPPGTGKTATAIALARDL 62 (226)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 8999999999999999999875
No 155
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.32 E-value=0.00015 Score=68.38 Aligned_cols=33 Identities=21% Similarity=0.351 Sum_probs=28.7
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhCCCeeeh
Q 022951 73 KHVQWVFLGCPGVGKGTYASRLSNLLGVPHIAT 105 (289)
Q Consensus 73 ~~~~Ivl~GppGsGKSTlak~La~~lg~~~i~~ 105 (289)
.+.=|+|.||||+|||++|+.||..++.+++.+
T Consensus 215 ~prGvLLyGPPGTGKTlLAkAiA~e~~~~fi~v 247 (437)
T 4b4t_I 215 PPKGVILYGAPGTGKTLLAKAVANQTSATFLRI 247 (437)
T ss_dssp CCSEEEEESSTTTTHHHHHHHHHHHHTCEEEEE
T ss_pred CCCCCceECCCCchHHHHHHHHHHHhCCCEEEE
Confidence 345689999999999999999999999877653
No 156
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=97.28 E-value=5.2e-05 Score=69.91 Aligned_cols=30 Identities=30% Similarity=0.499 Sum_probs=27.2
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhCCCe
Q 022951 73 KHVQWVFLGCPGVGKGTYASRLSNLLGVPH 102 (289)
Q Consensus 73 ~~~~Ivl~GppGsGKSTlak~La~~lg~~~ 102 (289)
..+.|+|+|+|||||||+++.|++.+++.+
T Consensus 23 ~~~~i~l~G~~G~GKTTl~~~la~~l~~~f 52 (359)
T 2ga8_A 23 YRVCVILVGSPGSGKSTIAEELCQIINEKY 52 (359)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHHHHH
T ss_pred CeeEEEEECCCCCcHHHHHHHHHHHhCCCe
Confidence 446799999999999999999999998877
No 157
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=97.28 E-value=0.00023 Score=59.41 Aligned_cols=86 Identities=17% Similarity=0.099 Sum_probs=46.2
Q ss_pred EEEEcCCCCCHHHHHHHHHHHhCC--CeeehHHHHHHHHHcCCccCHHHHHHHHHHHHHcccccCCceEEEcCcccH--H
Q 022951 77 WVFLGCPGVGKGTYASRLSNLLGV--PHIATGDLLDEIVSQGKLVSDEIIINLLSKRLEAGEAKGEAGFILDGFPRT--E 152 (289)
Q Consensus 77 Ivl~GppGsGKSTlak~La~~lg~--~~i~~d~l~~~~l~~g~~v~~~~~~~ll~~~l~~~~~~~~~g~Ildg~p~~--~ 152 (289)
++|+|++||||||+|..|+.. +. .|+.+ +....++...++..+..... .+|+.--.|.. +
T Consensus 2 ilV~Gg~~SGKS~~A~~la~~-~~~~~yiaT----------~~~~d~e~~~rI~~h~~~R~-----~~w~tiE~p~~l~~ 65 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIGD-APQVLYIAT----------SQILDDEMAARIQHHKDGRP-----AHWRTAECWRHLDT 65 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCS-CSSEEEEEC----------CCC------CHHHHHHHTSC-----TTEEEECCSSCGGG
T ss_pred EEEECCCCCcHHHHHHHHHhc-CCCeEEEec----------CCCCCHHHHHHHHHHHhcCC-----CCcEEEEcHhhHHH
Confidence 789999999999999999977 64 35555 22222333333333332221 24544222322 3
Q ss_pred HHhhcCCCcEEEEEecCHHHHHHHHh
Q 022951 153 ILEGVTDIDLVINLKLREEALLAKCL 178 (289)
Q Consensus 153 ~l~~~~~~d~vI~Ld~~~e~l~~Rl~ 178 (289)
.+.....+.-+|.+||=.--+..-+.
T Consensus 66 ~l~~~~~~~~~VLvDclt~wl~n~l~ 91 (180)
T 1c9k_A 66 LITADLAPDDAILLECITTMVTNLLF 91 (180)
T ss_dssp TSCTTSCTTCEEEEECHHHHHHHHHH
T ss_pred HHHhhcccCCeEEEcCHHHHHHHHHh
Confidence 33333233348889987766555443
No 158
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=97.27 E-value=0.00019 Score=64.82 Aligned_cols=31 Identities=19% Similarity=0.308 Sum_probs=27.2
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHHHhCCCeee
Q 022951 74 HVQWVFLGCPGVGKGTYASRLSNLLGVPHIA 104 (289)
Q Consensus 74 ~~~Ivl~GppGsGKSTlak~La~~lg~~~i~ 104 (289)
+.-++|.||||+|||++|+.+++.++..++.
T Consensus 51 ~~~vLl~GppGtGKT~la~aia~~~~~~~~~ 81 (322)
T 3eie_A 51 TSGILLYGPPGTGKSYLAKAVATEANSTFFS 81 (322)
T ss_dssp CCEEEEECSSSSCHHHHHHHHHHHHTCEEEE
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHCCCEEE
Confidence 4568999999999999999999999876654
No 159
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=97.26 E-value=0.00017 Score=63.98 Aligned_cols=27 Identities=33% Similarity=0.497 Sum_probs=24.2
Q ss_pred EEEEcCCCCCHHHHHHHHHHHhCCCee
Q 022951 77 WVFLGCPGVGKGTYASRLSNLLGVPHI 103 (289)
Q Consensus 77 Ivl~GppGsGKSTlak~La~~lg~~~i 103 (289)
++|.|||||||||+++.|+..++..++
T Consensus 47 vlL~Gp~GtGKTtLakala~~~~~~~i 73 (274)
T 2x8a_A 47 VLLAGPPGCGKTLLAKAVANESGLNFI 73 (274)
T ss_dssp EEEESSTTSCHHHHHHHHHHHTTCEEE
T ss_pred EEEECCCCCcHHHHHHHHHHHcCCCEE
Confidence 899999999999999999999876444
No 160
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=97.24 E-value=0.00019 Score=66.11 Aligned_cols=31 Identities=26% Similarity=0.429 Sum_probs=27.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhCCCeeeh
Q 022951 75 VQWVFLGCPGVGKGTYASRLSNLLGVPHIAT 105 (289)
Q Consensus 75 ~~Ivl~GppGsGKSTlak~La~~lg~~~i~~ 105 (289)
..++|+||||+|||++|+.|++.++.+++..
T Consensus 73 ~~ill~Gp~GtGKT~la~~la~~l~~~~~~~ 103 (376)
T 1um8_A 73 SNILLIGPTGSGKTLMAQTLAKHLDIPIAIS 103 (376)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHTTCCEEEE
T ss_pred CCEEEECCCCCCHHHHHHHHHHHhCCCEEEe
Confidence 4589999999999999999999998777654
No 161
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=97.23 E-value=0.00022 Score=63.89 Aligned_cols=37 Identities=22% Similarity=0.175 Sum_probs=30.1
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhC-------CCee-ehHHHH
Q 022951 73 KHVQWVFLGCPGVGKGTYASRLSNLLG-------VPHI-ATGDLL 109 (289)
Q Consensus 73 ~~~~Ivl~GppGsGKSTlak~La~~lg-------~~~i-~~d~l~ 109 (289)
++.+|.|.|++||||||+++.|+..++ ...+ +.|+++
T Consensus 30 ~~~ii~I~G~sGsGKSTla~~L~~~l~~~g~~~~~~~iv~~D~f~ 74 (290)
T 1odf_A 30 CPLFIFFSGPQGSGKSFTSIQIYNHLMEKYGGEKSIGYASIDDFY 74 (290)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHHHHHGGGSCEEEEEGGGGB
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhhhcCCCCceEEEecccccc
Confidence 567899999999999999999999874 3445 776655
No 162
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=97.22 E-value=0.0002 Score=63.42 Aligned_cols=30 Identities=37% Similarity=0.579 Sum_probs=26.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhCCCeee
Q 022951 75 VQWVFLGCPGVGKGTYASRLSNLLGVPHIA 104 (289)
Q Consensus 75 ~~Ivl~GppGsGKSTlak~La~~lg~~~i~ 104 (289)
..++|.||||+|||++|+.|++.++.+++.
T Consensus 51 ~~vll~G~~GtGKT~la~~la~~l~~~~~~ 80 (310)
T 1ofh_A 51 KNILMIGPTGVGKTEIARRLAKLANAPFIK 80 (310)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHHTCCEEE
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCCEEE
Confidence 457899999999999999999999876654
No 163
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=97.22 E-value=0.00024 Score=57.61 Aligned_cols=25 Identities=32% Similarity=0.505 Sum_probs=22.4
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHHHh
Q 022951 74 HVQWVFLGCPGVGKGTYASRLSNLL 98 (289)
Q Consensus 74 ~~~Ivl~GppGsGKSTlak~La~~l 98 (289)
+..++|+|+||+|||++++.+++.+
T Consensus 43 ~~~~ll~G~~G~GKT~l~~~~~~~~ 67 (195)
T 1jbk_A 43 KNNPVLIGEPGVGKTAIVEGLAQRI 67 (195)
T ss_dssp SCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHHHH
Confidence 4567899999999999999999986
No 164
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=97.18 E-value=0.00091 Score=63.51 Aligned_cols=31 Identities=23% Similarity=0.303 Sum_probs=27.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhCCCeeeh
Q 022951 75 VQWVFLGCPGVGKGTYASRLSNLLGVPHIAT 105 (289)
Q Consensus 75 ~~Ivl~GppGsGKSTlak~La~~lg~~~i~~ 105 (289)
..++|+||||+||||+|+.|++.++..++..
T Consensus 51 ~~vLL~GppGtGKTtlAr~ia~~~~~~f~~l 81 (447)
T 3pvs_A 51 HSMILWGPPGTGKTTLAEVIARYANADVERI 81 (447)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHTTCEEEEE
T ss_pred cEEEEECCCCCcHHHHHHHHHHHhCCCeEEE
Confidence 4689999999999999999999998777654
No 165
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=97.16 E-value=0.00028 Score=64.01 Aligned_cols=30 Identities=20% Similarity=0.311 Sum_probs=25.6
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHHHh-CCCee
Q 022951 74 HVQWVFLGCPGVGKGTYASRLSNLL-GVPHI 103 (289)
Q Consensus 74 ~~~Ivl~GppGsGKSTlak~La~~l-g~~~i 103 (289)
+.-|+|.||||+|||++|+.++..+ +..++
T Consensus 45 ~~~iLL~GppGtGKT~la~ala~~~~~~~~~ 75 (322)
T 1xwi_A 45 WRGILLFGPPGTGKSYLAKAVATEANNSTFF 75 (322)
T ss_dssp CSEEEEESSSSSCHHHHHHHHHHHTTSCEEE
T ss_pred CceEEEECCCCccHHHHHHHHHHHcCCCcEE
Confidence 3568899999999999999999998 65554
No 166
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=97.16 E-value=0.00021 Score=57.92 Aligned_cols=25 Identities=32% Similarity=0.469 Sum_probs=22.5
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHHHh
Q 022951 74 HVQWVFLGCPGVGKGTYASRLSNLL 98 (289)
Q Consensus 74 ~~~Ivl~GppGsGKSTlak~La~~l 98 (289)
...++|+||||+||||+++.+++.+
T Consensus 43 ~~~vll~G~~G~GKT~la~~~~~~~ 67 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAIVEGLAIKI 67 (187)
T ss_dssp SCEEEEESCGGGCHHHHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHHHH
Confidence 4567999999999999999999987
No 167
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=97.16 E-value=0.0002 Score=60.87 Aligned_cols=35 Identities=26% Similarity=0.190 Sum_probs=28.8
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhCCCeeehHHH
Q 022951 73 KHVQWVFLGCPGVGKGTYASRLSNLLGVPHIATGDL 108 (289)
Q Consensus 73 ~~~~Ivl~GppGsGKSTlak~La~~lg~~~i~~d~l 108 (289)
....|+|+||+|+||||+|..|+++.+ .+++.|.+
T Consensus 33 ~g~~ilI~GpsGsGKStLA~~La~~g~-~iIsdDs~ 67 (205)
T 2qmh_A 33 YGLGVLITGDSGVGKSETALELVQRGH-RLIADDRV 67 (205)
T ss_dssp TTEEEEEECCCTTTTHHHHHHHHTTTC-EEEESSEE
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhCC-eEEecchh
Confidence 346789999999999999999999866 77766443
No 168
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=97.16 E-value=0.00029 Score=61.14 Aligned_cols=28 Identities=36% Similarity=0.571 Sum_probs=24.5
Q ss_pred EEEEcCCCCCHHHHHHHHHHHhCCCeee
Q 022951 77 WVFLGCPGVGKGTYASRLSNLLGVPHIA 104 (289)
Q Consensus 77 Ivl~GppGsGKSTlak~La~~lg~~~i~ 104 (289)
++|+|||||||||+++.|+..++..++.
T Consensus 52 ~ll~G~~G~GKTtl~~~i~~~~~~~~i~ 79 (254)
T 1ixz_A 52 VLLVGPPGVGKTHLARAVAGEARVPFIT 79 (254)
T ss_dssp EEEECCTTSSHHHHHHHHHHHTTCCEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCCEEE
Confidence 8999999999999999999988755543
No 169
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=97.15 E-value=0.00062 Score=69.12 Aligned_cols=38 Identities=21% Similarity=0.291 Sum_probs=31.0
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHHHhCCCeee--hHHHH
Q 022951 72 GKHVQWVFLGCPGVGKGTYASRLSNLLGVPHIA--TGDLL 109 (289)
Q Consensus 72 ~~~~~Ivl~GppGsGKSTlak~La~~lg~~~i~--~d~l~ 109 (289)
..+.-|+|.||||+|||++|+.||..+|.+++. ..+++
T Consensus 236 ~~p~GILL~GPPGTGKT~LAraiA~elg~~~~~v~~~~l~ 275 (806)
T 3cf2_A 236 KPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIM 275 (806)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHTTTTCEEEEEEHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHhCCeEEEEEhHHhh
Confidence 345679999999999999999999999987765 34444
No 170
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=97.13 E-value=0.00028 Score=64.83 Aligned_cols=32 Identities=19% Similarity=0.298 Sum_probs=27.3
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHHHhCCCeeeh
Q 022951 74 HVQWVFLGCPGVGKGTYASRLSNLLGVPHIAT 105 (289)
Q Consensus 74 ~~~Ivl~GppGsGKSTlak~La~~lg~~~i~~ 105 (289)
+.-|+|.||||+|||++|+.|+..++.+++.+
T Consensus 84 ~~~iLL~GppGtGKT~la~ala~~~~~~~~~v 115 (355)
T 2qp9_X 84 TSGILLYGPPGTGKSYLAKAVATEANSTFFSV 115 (355)
T ss_dssp CCCEEEECSTTSCHHHHHHHHHHHHTCEEEEE
T ss_pred CceEEEECCCCCcHHHHHHHHHHHhCCCEEEe
Confidence 34588999999999999999999998776543
No 171
>3kfv_A Tight junction protein ZO-3; structural genomics consortium, SGC, cell junction, cell membrane, membrane, SH3 domain; 2.80A {Homo sapiens}
Probab=97.13 E-value=0.0032 Score=56.77 Aligned_cols=143 Identities=15% Similarity=0.088 Sum_probs=75.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhCCCe-eehHHHHHHHHHcCCccCHHHHHHHHHHHHHcccccCCceEEEcCcccH-H
Q 022951 75 VQWVFLGCPGVGKGTYASRLSNLLGVPH-IATGDLLDEIVSQGKLVSDEIIINLLSKRLEAGEAKGEAGFILDGFPRT-E 152 (289)
Q Consensus 75 ~~Ivl~GppGsGKSTlak~La~~lg~~~-i~~d~l~~~~l~~g~~v~~~~~~~ll~~~l~~~~~~~~~g~Ildg~p~~-~ 152 (289)
.-|||+|| ||+|+.++|.+.+.-.+ ++.. +..-+.+++.++-+.+.+.+ .. +..+|||--+.. .
T Consensus 146 RPvVl~GP---~k~~l~~~L~~~~P~~F~~~v~--~~r~i~~~~fis~~~V~~vl----~~-----Gk~~ILDId~QGa~ 211 (308)
T 3kfv_A 146 RPVVILGP---VADIAMQKLTAEMPDQFEIAET--VSRTDSPSKIIKLDTVRVIA----EK-----DKHALLDVTPSAIE 211 (308)
T ss_dssp CCEEEEST---THHHHHHHHHHHCTTTEEECCC--C--------CCCHHHHHHHH----HT-----TCEEEECCCHHHHH
T ss_pred CeEEEeCc---cHHHHHHHHHHhCccccccccc--ccccccCCCeecHHHHHHHH----HC-----CCcEEEEECHHHHH
Confidence 34788999 79999999988874322 2211 11114567777544443333 32 468899875544 4
Q ss_pred HHhhcCCCcEEEEEecCH-HHHHHHHhcccccccCCCccccccccccCCCCCCCCCCCCCCCCCccccCccccCCCcHHH
Q 022951 153 ILEGVTDIDLVINLKLRE-EALLAKCLGRRICSECGGNYNVACIDIKGENGNPGMYMGPLLPPPHCASKLITRSDDKEEV 231 (289)
Q Consensus 153 ~l~~~~~~d~vI~Ld~~~-e~l~~Rl~~R~~~~~~g~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~r~~d~~~~ 231 (289)
.+......-++||+..|. +.+.+ +.+|.. .++++.
T Consensus 212 ~lk~~~~~pi~IFI~PPS~eeL~~-rr~R~~-------------------------------------------~esee~ 247 (308)
T 3kfv_A 212 RLNYVQYYPIVVFFIPESRPALKA-LRQWLA-------------------------------------------PASRRS 247 (308)
T ss_dssp HHHHTTCCCEEEEEEESCHHHHHH-HHHHHS-------------------------------------------TTCCCC
T ss_pred HHHhcCCCCEEEEEeCCCHHHHHH-HHhcCC-------------------------------------------CCCHHH
Confidence 444322223667776654 55555 444531 111224
Q ss_pred HHHHHHHHHHhchHHHHHHHHcCcEEE-EeCCCCcccHHHHHHHHhccCCc
Q 022951 232 VRERLRIYNEKSRPVEEFYRRRGKLLE-FDLPGGIPESWPKLLQALNLEDP 281 (289)
Q Consensus 232 ~~~rl~~y~~~~~~l~~~y~~~~~l~~-id~~~~~~ev~~~i~~~l~~~~~ 281 (289)
++++++...+ ++..|.....++. || .++++.+.+|..+|..+..
T Consensus 248 ~~r~~~aa~e----iE~~~~~~FD~vI~VN--Ddle~A~~~L~~iI~~~~~ 292 (308)
T 3kfv_A 248 TRRLYAQAQK----LRKHSSHLFTATIPLN--GTSDTWYQELKAIIREQQT 292 (308)
T ss_dssp HHHHHHHHHH----HHHHHGGGCSEEEEEC--SSSTHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHH----HHHhhhccCcEEEEcC--CCHHHHHHHHHHHHHHhcC
Confidence 5555554332 2223433333444 65 4689999999999977643
No 172
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=97.12 E-value=0.0003 Score=62.53 Aligned_cols=25 Identities=40% Similarity=0.678 Sum_probs=22.8
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHHHh
Q 022951 74 HVQWVFLGCPGVGKGTYASRLSNLL 98 (289)
Q Consensus 74 ~~~Ivl~GppGsGKSTlak~La~~l 98 (289)
...++|+||||+|||++|+.+++.+
T Consensus 67 ~~~vll~G~~GtGKT~la~~la~~l 91 (309)
T 3syl_A 67 TLHMSFTGNPGTGKTTVALKMAGLL 91 (309)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHH
Confidence 4568999999999999999999987
No 173
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=97.11 E-value=0.00036 Score=63.48 Aligned_cols=28 Identities=29% Similarity=0.367 Sum_probs=24.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhCCCe
Q 022951 75 VQWVFLGCPGVGKGTYASRLSNLLGVPH 102 (289)
Q Consensus 75 ~~Ivl~GppGsGKSTlak~La~~lg~~~ 102 (289)
..++|+||||+||||+++.|+..++..+
T Consensus 52 ~~~ll~Gp~G~GKTTLa~~ia~~l~~~~ 79 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLAHIIASELQTNI 79 (334)
T ss_dssp CCEEEESSTTSSHHHHHHHHHHHHTCCE
T ss_pred CeEEEECCCCCcHHHHHHHHHHHhCCCE
Confidence 4578999999999999999999997654
No 174
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=97.10 E-value=0.00014 Score=63.54 Aligned_cols=29 Identities=28% Similarity=0.464 Sum_probs=25.5
Q ss_pred EEEEcCCCCCHHHHHHHHHHHhCCCeeeh
Q 022951 77 WVFLGCPGVGKGTYASRLSNLLGVPHIAT 105 (289)
Q Consensus 77 Ivl~GppGsGKSTlak~La~~lg~~~i~~ 105 (289)
++|.||||+|||++|+.|++.++.+++.+
T Consensus 47 vll~G~~GtGKT~la~~la~~~~~~~~~v 75 (268)
T 2r62_A 47 VLLVGPPGTGKTLLAKAVAGEAHVPFFSM 75 (268)
T ss_dssp CCCBCSSCSSHHHHHHHHHHHHTCCCCCC
T ss_pred EEEECCCCCcHHHHHHHHHHHhCCCEEEe
Confidence 68999999999999999999998766543
No 175
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=97.08 E-value=0.00092 Score=67.87 Aligned_cols=37 Identities=30% Similarity=0.405 Sum_probs=30.6
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhCCCeeeh--HHHH
Q 022951 73 KHVQWVFLGCPGVGKGTYASRLSNLLGVPHIAT--GDLL 109 (289)
Q Consensus 73 ~~~~Ivl~GppGsGKSTlak~La~~lg~~~i~~--d~l~ 109 (289)
.+.-|+|.||||+|||.+|+.||...+.+++.+ .+++
T Consensus 510 ~~~gvLl~GPPGtGKT~lAkaiA~e~~~~f~~v~~~~l~ 548 (806)
T 3cf2_A 510 PSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELL 548 (806)
T ss_dssp CCSCCEEESSTTSSHHHHHHHHHHTTTCEEEECCHHHHH
T ss_pred CCceEEEecCCCCCchHHHHHHHHHhCCceEEeccchhh
Confidence 345689999999999999999999999888753 4554
No 176
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=97.07 E-value=0.00038 Score=63.94 Aligned_cols=32 Identities=19% Similarity=0.338 Sum_probs=27.8
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhCCCeee
Q 022951 73 KHVQWVFLGCPGVGKGTYASRLSNLLGVPHIA 104 (289)
Q Consensus 73 ~~~~Ivl~GppGsGKSTlak~La~~lg~~~i~ 104 (289)
.+..|+|.||||+|||++|+.|++.++..++.
T Consensus 116 ~~~~vLl~GppGtGKT~la~aia~~~~~~~~~ 147 (357)
T 3d8b_A 116 PPKGILLFGPPGTGKTLIGKCIASQSGATFFS 147 (357)
T ss_dssp CCSEEEEESSTTSSHHHHHHHHHHHTTCEEEE
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHcCCeEEE
Confidence 35678999999999999999999999876654
No 177
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=97.03 E-value=0.0004 Score=65.98 Aligned_cols=32 Identities=31% Similarity=0.470 Sum_probs=27.5
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHHHhC--CCeeeh
Q 022951 74 HVQWVFLGCPGVGKGTYASRLSNLLG--VPHIAT 105 (289)
Q Consensus 74 ~~~Ivl~GppGsGKSTlak~La~~lg--~~~i~~ 105 (289)
+.-++|.||||+|||++|+.||+.++ ++++.+
T Consensus 63 ~~~iLl~GppGtGKT~la~ala~~l~~~~~~~~~ 96 (456)
T 2c9o_A 63 GRAVLLAGPPGTGKTALALAIAQELGSKVPFCPM 96 (456)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHHHHCTTSCEEEE
T ss_pred CCeEEEECCCcCCHHHHHHHHHHHhCCCceEEEE
Confidence 35689999999999999999999998 666654
No 178
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=97.03 E-value=0.00077 Score=56.14 Aligned_cols=38 Identities=24% Similarity=0.287 Sum_probs=29.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHh---C--CCeeehHHHHHHH
Q 022951 75 VQWVFLGCPGVGKGTYASRLSNLL---G--VPHIATGDLLDEI 112 (289)
Q Consensus 75 ~~Ivl~GppGsGKSTlak~La~~l---g--~~~i~~d~l~~~~ 112 (289)
..++|+|++|+||||+++.|+..+ + +.+++..++...+
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~~~~~~~ 97 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELAKRNVSSLIVYVPELFREL 97 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEEHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEhHHHHHHH
Confidence 568899999999999999999876 3 3446776666444
No 179
>2xkx_A Disks large homolog 4; structural protein, scaffold protein, membrane associated GU kinase; 22.9A {Rattus norvegicus}
Probab=97.02 E-value=0.01 Score=59.58 Aligned_cols=46 Identities=11% Similarity=0.067 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHhchHHHHHHHHcCcEEEEeCCCCcccHHHHHHHHhccCCc
Q 022951 230 EVVRERLRIYNEKSRPVEEFYRRRGKLLEFDLPGGIPESWPKLLQALNLEDP 281 (289)
Q Consensus 230 ~~~~~rl~~y~~~~~~l~~~y~~~~~l~~id~~~~~~ev~~~i~~~l~~~~~ 281 (289)
+.+++|+....+. +..|.....++ |+++ ++++.+.+|.++|..+..
T Consensus 665 ~~~~~rl~~a~~~----e~~~~~~fd~v-i~Nd-~l~~a~~~l~~~i~~~~~ 710 (721)
T 2xkx_A 665 EQARKAFDRATKL----EQEFTECFSAI-VEGD-SFEEIYHKVKRVIEDLSG 710 (721)
T ss_pred HHHHHHHHHHHHH----HHhccccCcEE-EECc-CHHHHHHHHHHHHHhccC
Confidence 4578888876432 11122222344 4433 899999999999987643
No 180
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=97.02 E-value=0.00047 Score=62.20 Aligned_cols=31 Identities=29% Similarity=0.319 Sum_probs=27.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhCCCeeeh
Q 022951 75 VQWVFLGCPGVGKGTYASRLSNLLGVPHIAT 105 (289)
Q Consensus 75 ~~Ivl~GppGsGKSTlak~La~~lg~~~i~~ 105 (289)
..++|.||||+|||++|+.|++.++.+++..
T Consensus 56 ~~vll~G~~GtGKT~la~~ia~~~~~~~~~~ 86 (338)
T 3pfi_A 56 DHILFSGPAGLGKTTLANIISYEMSANIKTT 86 (338)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHTTCCEEEE
T ss_pred CeEEEECcCCCCHHHHHHHHHHHhCCCeEEe
Confidence 3589999999999999999999998877654
No 181
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=97.00 E-value=0.00047 Score=58.33 Aligned_cols=36 Identities=11% Similarity=-0.071 Sum_probs=28.0
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhC-----CCeeehHHH
Q 022951 73 KHVQWVFLGCPGVGKGTYASRLSNLLG-----VPHIATGDL 108 (289)
Q Consensus 73 ~~~~Ivl~GppGsGKSTlak~La~~lg-----~~~i~~d~l 108 (289)
....++|.||||+||||+++.+++.++ +.+++..++
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~ 91 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACARANELERRSFYIPLGIH 91 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGG
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHH
Confidence 356789999999999999999998764 345555443
No 182
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=97.00 E-value=0.00048 Score=60.68 Aligned_cols=28 Identities=36% Similarity=0.571 Sum_probs=24.6
Q ss_pred EEEEcCCCCCHHHHHHHHHHHhCCCeee
Q 022951 77 WVFLGCPGVGKGTYASRLSNLLGVPHIA 104 (289)
Q Consensus 77 Ivl~GppGsGKSTlak~La~~lg~~~i~ 104 (289)
++|+|||||||||+++.|+..++..++.
T Consensus 76 vll~Gp~GtGKTtl~~~i~~~~~~~~i~ 103 (278)
T 1iy2_A 76 VLLVGPPGVGKTHLARAVAGEARVPFIT 103 (278)
T ss_dssp EEEECCTTSSHHHHHHHHHHHTTCCEEE
T ss_pred EEEECCCcChHHHHHHHHHHHcCCCEEE
Confidence 8999999999999999999988755544
No 183
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=96.96 E-value=0.0006 Score=63.39 Aligned_cols=32 Identities=34% Similarity=0.468 Sum_probs=27.9
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhCCCeee
Q 022951 73 KHVQWVFLGCPGVGKGTYASRLSNLLGVPHIA 104 (289)
Q Consensus 73 ~~~~Ivl~GppGsGKSTlak~La~~lg~~~i~ 104 (289)
.+..++|.|||||||||+++.|+..++..++.
T Consensus 168 ~~~~i~l~G~~GsGKSTl~~~l~~~~~g~~~~ 199 (377)
T 1svm_A 168 KKRYWLFKGPIDSGKTTLAAALLELCGGKALN 199 (377)
T ss_dssp TCCEEEEECSTTSSHHHHHHHHHHHHCCEEEC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhcCCcEEE
Confidence 45689999999999999999999998776665
No 184
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=96.95 E-value=0.00047 Score=54.79 Aligned_cols=23 Identities=30% Similarity=0.359 Sum_probs=20.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHh
Q 022951 76 QWVFLGCPGVGKGTYASRLSNLL 98 (289)
Q Consensus 76 ~Ivl~GppGsGKSTlak~La~~l 98 (289)
-|+|.|+||+|||++|+.|++..
T Consensus 26 ~vll~G~~GtGKt~lA~~i~~~~ 48 (145)
T 3n70_A 26 AVWLYGAPGTGRMTGARYLHQFG 48 (145)
T ss_dssp CEEEESSTTSSHHHHHHHHHHSS
T ss_pred CEEEECCCCCCHHHHHHHHHHhC
Confidence 37899999999999999999865
No 185
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=96.95 E-value=0.00052 Score=57.82 Aligned_cols=27 Identities=26% Similarity=0.186 Sum_probs=23.7
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhC
Q 022951 73 KHVQWVFLGCPGVGKGTYASRLSNLLG 99 (289)
Q Consensus 73 ~~~~Ivl~GppGsGKSTlak~La~~lg 99 (289)
+.-+++|+||+||||||+.+.|+..+.
T Consensus 19 ~Gei~~l~GpnGsGKSTLl~~l~gl~~ 45 (207)
T 1znw_A 19 VGRVVVLSGPSAVGKSTVVRCLRERIP 45 (207)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 346789999999999999999998774
No 186
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=96.93 E-value=0.00059 Score=61.77 Aligned_cols=107 Identities=20% Similarity=0.215 Sum_probs=61.4
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHHHhC-------CCeeehHHHH-----HHHHH----cCC--ccCHHHHHHHHHHHHH
Q 022951 72 GKHVQWVFLGCPGVGKGTYASRLSNLLG-------VPHIATGDLL-----DEIVS----QGK--LVSDEIIINLLSKRLE 133 (289)
Q Consensus 72 ~~~~~Ivl~GppGsGKSTlak~La~~lg-------~~~i~~d~l~-----~~~l~----~g~--~v~~~~~~~ll~~~l~ 133 (289)
.++.+|.|.||+||||||+++.|+..+. +.++..|..+ .+.+. .|. ....+.+.+.+...-
T Consensus 88 ~~g~ivgI~G~sGsGKSTL~~~L~gll~~~~G~~~v~~v~qd~~~~~~t~~e~~~~~~~~g~~~~~d~~~~~~~L~~l~- 166 (312)
T 3aez_A 88 PVPFIIGVAGSVAVGKSTTARVLQALLARWDHHPRVDLVTTDGFLYPNAELQRRNLMHRKGFPESYNRRALMRFVTSVK- 166 (312)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHHHHTSTTCCCEEEEEGGGGBCCHHHHHHTTCTTCTTSGGGBCHHHHHHHHHHHH-
T ss_pred CCCEEEEEECCCCchHHHHHHHHHhhccccCCCCeEEEEecCccCCcccHHHHHHHHHhcCCChHHHHHHHHHHHHHhC-
Confidence 4567899999999999999999998762 3345544332 11111 111 111233444443322
Q ss_pred cccc----------------------cCCceEEEcCcccH-----HHHhhcCCCcEEEEEecCHHHHHHHHhccc
Q 022951 134 AGEA----------------------KGEAGFILDGFPRT-----EILEGVTDIDLVINLKLREEALLAKCLGRR 181 (289)
Q Consensus 134 ~~~~----------------------~~~~g~Ildg~p~~-----~~l~~~~~~d~vI~Ld~~~e~l~~Rl~~R~ 181 (289)
.... ....-+|+||.... ..+.. ..|.+||++++.+...+|+..|.
T Consensus 167 ~~~~~~~~~~lS~G~~qRv~~a~al~~~p~ilIlDep~~~~d~~~~~l~~--~~D~~I~V~a~~~~~~~R~i~R~ 239 (312)
T 3aez_A 167 SGSDYACAPVYSHLHYDIIPGAEQVVRHPDILILEGLNVLQTGPTLMVSD--LFDFSLYVDARIEDIEQWYVSRF 239 (312)
T ss_dssp TTCSCEEEEEEETTTTEEEEEEEEEECSCSEEEEECTTTTCCCSSCCGGG--GCSEEEEEEECHHHHHHHHHHHH
T ss_pred CCcccCCcccCChhhhhhhhhHHHhccCCCEEEECCccccCCcchHHHHH--hcCcEEEEECCHHHHHHHHHHHH
Confidence 1110 11235666762111 11222 25899999999999999988774
No 187
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=96.93 E-value=0.00061 Score=63.16 Aligned_cols=32 Identities=19% Similarity=0.263 Sum_probs=28.1
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHHHhCCCeeeh
Q 022951 74 HVQWVFLGCPGVGKGTYASRLSNLLGVPHIAT 105 (289)
Q Consensus 74 ~~~Ivl~GppGsGKSTlak~La~~lg~~~i~~ 105 (289)
+..++|.||||+|||++|+.|+..++..++.+
T Consensus 148 ~~~vLL~GppGtGKT~la~aia~~~~~~~~~v 179 (389)
T 3vfd_A 148 ARGLLLFGPPGNGKTMLAKAVAAESNATFFNI 179 (389)
T ss_dssp CSEEEEESSTTSCHHHHHHHHHHHTTCEEEEE
T ss_pred CceEEEECCCCCCHHHHHHHHHHhhcCcEEEe
Confidence 45789999999999999999999998877653
No 188
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.90 E-value=0.00063 Score=65.63 Aligned_cols=32 Identities=28% Similarity=0.394 Sum_probs=28.3
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHHHhCCCeeeh
Q 022951 74 HVQWVFLGCPGVGKGTYASRLSNLLGVPHIAT 105 (289)
Q Consensus 74 ~~~Ivl~GppGsGKSTlak~La~~lg~~~i~~ 105 (289)
...++|+||||+||||+|+.|++.+|+.++..
T Consensus 77 ~~~lLL~GppGtGKTtla~~la~~l~~~~i~i 108 (516)
T 1sxj_A 77 FRAAMLYGPPGIGKTTAAHLVAQELGYDILEQ 108 (516)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHHTTCEEEEE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCCCEEEE
Confidence 45789999999999999999999999877654
No 189
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=96.88 E-value=0.00077 Score=64.53 Aligned_cols=30 Identities=27% Similarity=0.442 Sum_probs=26.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCeeeh
Q 022951 76 QWVFLGCPGVGKGTYASRLSNLLGVPHIAT 105 (289)
Q Consensus 76 ~Ivl~GppGsGKSTlak~La~~lg~~~i~~ 105 (289)
-|+|.||||+||||+++.|+...+.+++.+
T Consensus 51 gvLL~GppGtGKT~Laraia~~~~~~f~~i 80 (476)
T 2ce7_A 51 GILLVGPPGTGKTLLARAVAGEANVPFFHI 80 (476)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHTCCEEEE
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCCCeeeC
Confidence 388999999999999999999999877653
No 190
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=96.87 E-value=0.00056 Score=58.35 Aligned_cols=30 Identities=20% Similarity=0.284 Sum_probs=25.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhCCCeee
Q 022951 75 VQWVFLGCPGVGKGTYASRLSNLLGVPHIA 104 (289)
Q Consensus 75 ~~Ivl~GppGsGKSTlak~La~~lg~~~i~ 104 (289)
..++|.||||+||||+|..|++.++...++
T Consensus 59 n~ili~GPPGtGKTt~a~ala~~l~g~i~~ 88 (212)
T 1tue_A 59 NCLVFCGPANTGKSYFGMSFIHFIQGAVIS 88 (212)
T ss_dssp SEEEEESCGGGCHHHHHHHHHHHHTCEECC
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCeee
Confidence 358999999999999999999988654443
No 191
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=96.84 E-value=0.0022 Score=57.41 Aligned_cols=32 Identities=22% Similarity=0.203 Sum_probs=26.8
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHHHhCCCeeeh
Q 022951 74 HVQWVFLGCPGVGKGTYASRLSNLLGVPHIAT 105 (289)
Q Consensus 74 ~~~Ivl~GppGsGKSTlak~La~~lg~~~i~~ 105 (289)
+..+++.||||+|||++++.|++.++..++..
T Consensus 48 ~~~~L~~G~~G~GKT~la~~la~~l~~~~~~i 79 (324)
T 3u61_B 48 PHIILHSPSPGTGKTTVAKALCHDVNADMMFV 79 (324)
T ss_dssp CSEEEECSSTTSSHHHHHHHHHHHTTEEEEEE
T ss_pred CeEEEeeCcCCCCHHHHHHHHHHHhCCCEEEE
Confidence 35677888899999999999999998766654
No 192
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=96.82 E-value=0.00039 Score=55.90 Aligned_cols=33 Identities=18% Similarity=0.144 Sum_probs=26.2
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHHh---C--CCeeeh
Q 022951 73 KHVQWVFLGCPGVGKGTYASRLSNLL---G--VPHIAT 105 (289)
Q Consensus 73 ~~~~Ivl~GppGsGKSTlak~La~~l---g--~~~i~~ 105 (289)
....++|+||+|+||||+++.|+..+ | ..+++.
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~~~g~~~~~~~~ 72 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQALEAGKNAAYIDA 72 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHHHTTTCCEEEEET
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEcH
Confidence 34568899999999999999999877 5 444544
No 193
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=96.82 E-value=0.00077 Score=63.84 Aligned_cols=36 Identities=22% Similarity=0.385 Sum_probs=27.1
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHHHh-CCCee--ehHHHH
Q 022951 74 HVQWVFLGCPGVGKGTYASRLSNLL-GVPHI--ATGDLL 109 (289)
Q Consensus 74 ~~~Ivl~GppGsGKSTlak~La~~l-g~~~i--~~d~l~ 109 (289)
+.-|+|.||||+|||++|+.|+..+ +..++ +..++.
T Consensus 167 ~~~vLL~GppGtGKT~lA~aia~~~~~~~~~~v~~~~l~ 205 (444)
T 2zan_A 167 WRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLV 205 (444)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHHCCSSEEEEECCC---
T ss_pred CceEEEECCCCCCHHHHHHHHHHHcCCCCEEEEeHHHHH
Confidence 3578999999999999999999998 65554 444554
No 194
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=96.82 E-value=0.00075 Score=56.56 Aligned_cols=26 Identities=35% Similarity=0.503 Sum_probs=23.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhCC
Q 022951 75 VQWVFLGCPGVGKGTYASRLSNLLGV 100 (289)
Q Consensus 75 ~~Ivl~GppGsGKSTlak~La~~lg~ 100 (289)
..++|.||+|+||||+++.+++.++.
T Consensus 46 ~~~ll~G~~G~GKT~l~~~~~~~~~~ 71 (250)
T 1njg_A 46 HAYLFSGTRGVGKTSIARLLAKGLNC 71 (250)
T ss_dssp SEEEEECSTTSCHHHHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 47899999999999999999998743
No 195
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=96.81 E-value=0.00083 Score=55.44 Aligned_cols=25 Identities=20% Similarity=0.291 Sum_probs=22.4
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHHHh
Q 022951 74 HVQWVFLGCPGVGKGTYASRLSNLL 98 (289)
Q Consensus 74 ~~~Ivl~GppGsGKSTlak~La~~l 98 (289)
+.++.|+|++||||||++..|+..+
T Consensus 4 ~~~i~i~G~sGsGKTTl~~~L~~~l 28 (169)
T 1xjc_A 4 MNVWQVVGYKHSGKTTLMEKWVAAA 28 (169)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhh
Confidence 4578899999999999999999875
No 196
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=96.78 E-value=0.00094 Score=60.03 Aligned_cols=35 Identities=20% Similarity=0.196 Sum_probs=28.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHh---CC--CeeehHHHH
Q 022951 75 VQWVFLGCPGVGKGTYASRLSNLL---GV--PHIATGDLL 109 (289)
Q Consensus 75 ~~Ivl~GppGsGKSTlak~La~~l---g~--~~i~~d~l~ 109 (289)
..++|+||||+||||+++.++..+ +. .+++..++.
T Consensus 38 ~~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~~~~~~ 77 (324)
T 1l8q_A 38 NPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSADDFA 77 (324)
T ss_dssp SSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEHHHHH
Confidence 457899999999999999999977 54 456666655
No 197
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=96.72 E-value=0.00093 Score=60.84 Aligned_cols=27 Identities=30% Similarity=0.428 Sum_probs=24.4
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHHHhCC
Q 022951 74 HVQWVFLGCPGVGKGTYASRLSNLLGV 100 (289)
Q Consensus 74 ~~~Ivl~GppGsGKSTlak~La~~lg~ 100 (289)
+..++|.||||+|||++|+.+++.++.
T Consensus 70 ~~~vLl~GppGtGKT~la~~la~~l~~ 96 (368)
T 3uk6_A 70 GRAVLIAGQPGTGKTAIAMGMAQALGP 96 (368)
T ss_dssp TCEEEEEESTTSSHHHHHHHHHHHHCS
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 357899999999999999999999874
No 198
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=96.72 E-value=0.00069 Score=61.03 Aligned_cols=28 Identities=18% Similarity=0.353 Sum_probs=25.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCee
Q 022951 76 QWVFLGCPGVGKGTYASRLSNLLGVPHI 103 (289)
Q Consensus 76 ~Ivl~GppGsGKSTlak~La~~lg~~~i 103 (289)
.++|.||||+|||++++.|++.++..++
T Consensus 48 ~vll~G~pGtGKT~la~~la~~~~~~~~ 75 (331)
T 2r44_A 48 HILLEGVPGLAKTLSVNTLAKTMDLDFH 75 (331)
T ss_dssp CEEEESCCCHHHHHHHHHHHHHTTCCEE
T ss_pred eEEEECCCCCcHHHHHHHHHHHhCCCeE
Confidence 4789999999999999999999987654
No 199
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=96.72 E-value=0.0013 Score=58.37 Aligned_cols=24 Identities=42% Similarity=0.629 Sum_probs=22.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHh
Q 022951 75 VQWVFLGCPGVGKGTYASRLSNLL 98 (289)
Q Consensus 75 ~~Ivl~GppGsGKSTlak~La~~l 98 (289)
..++|.||||+||||+|+.|++.+
T Consensus 48 ~~~ll~G~~GtGKt~la~~la~~~ 71 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAKTLAATL 71 (311)
T ss_dssp EEEEEESCSSSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHHHH
Confidence 468999999999999999999987
No 200
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=96.70 E-value=0.00087 Score=59.85 Aligned_cols=30 Identities=33% Similarity=0.517 Sum_probs=25.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhCCCeee
Q 022951 75 VQWVFLGCPGVGKGTYASRLSNLLGVPHIA 104 (289)
Q Consensus 75 ~~Ivl~GppGsGKSTlak~La~~lg~~~i~ 104 (289)
..++|+||||+|||++|+.+++.++.+++.
T Consensus 39 ~~vll~G~~GtGKT~la~~i~~~~~~~~~~ 68 (324)
T 1hqc_A 39 EHLLLFGPPGLGKTTLAHVIAHELGVNLRV 68 (324)
T ss_dssp CCCEEECCTTCCCHHHHHHHHHHHTCCEEE
T ss_pred CcEEEECCCCCCHHHHHHHHHHHhCCCEEE
Confidence 347899999999999999999999876653
No 201
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=96.67 E-value=0.0012 Score=64.24 Aligned_cols=32 Identities=31% Similarity=0.468 Sum_probs=27.4
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhCCCeee
Q 022951 73 KHVQWVFLGCPGVGKGTYASRLSNLLGVPHIA 104 (289)
Q Consensus 73 ~~~~Ivl~GppGsGKSTlak~La~~lg~~~i~ 104 (289)
+...++|.||||+||||+++.|+..++..++.
T Consensus 107 ~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~ 138 (543)
T 3m6a_A 107 KGPILCLAGPPGVGKTSLAKSIAKSLGRKFVR 138 (543)
T ss_dssp CSCEEEEESSSSSSHHHHHHHHHHHHTCEEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhcCCCeEE
Confidence 45678999999999999999999999766544
No 202
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=96.64 E-value=0.0013 Score=60.07 Aligned_cols=25 Identities=28% Similarity=0.408 Sum_probs=22.7
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHHHh
Q 022951 74 HVQWVFLGCPGVGKGTYASRLSNLL 98 (289)
Q Consensus 74 ~~~Ivl~GppGsGKSTlak~La~~l 98 (289)
+..++|.||||+||||+++.+++.+
T Consensus 45 ~~~vll~G~~G~GKT~la~~l~~~~ 69 (384)
T 2qby_B 45 KFSNLFLGLTGTGKTFVSKYIFNEI 69 (384)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHH
Confidence 4578999999999999999999976
No 203
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=96.63 E-value=0.00033 Score=55.63 Aligned_cols=27 Identities=19% Similarity=0.096 Sum_probs=23.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCee
Q 022951 76 QWVFLGCPGVGKGTYASRLSNLLGVPHI 103 (289)
Q Consensus 76 ~Ivl~GppGsGKSTlak~La~~lg~~~i 103 (289)
-|+|.|+||+|||++|+.|+...+ +++
T Consensus 29 ~vll~G~~GtGKt~lA~~i~~~~~-~~~ 55 (143)
T 3co5_A 29 PVFLTGEAGSPFETVARYFHKNGT-PWV 55 (143)
T ss_dssp CEEEEEETTCCHHHHHGGGCCTTS-CEE
T ss_pred cEEEECCCCccHHHHHHHHHHhCC-CeE
Confidence 378999999999999999988776 444
No 204
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=96.62 E-value=0.0016 Score=52.93 Aligned_cols=26 Identities=23% Similarity=0.232 Sum_probs=23.1
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHHh
Q 022951 73 KHVQWVFLGCPGVGKGTYASRLSNLL 98 (289)
Q Consensus 73 ~~~~Ivl~GppGsGKSTlak~La~~l 98 (289)
+.-++.|.||.||||||+.+.|+..+
T Consensus 32 ~Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 32 KAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 34578999999999999999999876
No 205
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=96.62 E-value=0.0017 Score=53.27 Aligned_cols=26 Identities=19% Similarity=0.437 Sum_probs=22.6
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHHH
Q 022951 72 GKHVQWVFLGCPGVGKGTYASRLSNL 97 (289)
Q Consensus 72 ~~~~~Ivl~GppGsGKSTlak~La~~ 97 (289)
....+|+|+|.+|+||||+..+|...
T Consensus 19 ~~~~ki~v~G~~~~GKSsli~~l~~~ 44 (191)
T 2a5j_A 19 SYLFKYIIIGDTGVGKSCLLLQFTDK 44 (191)
T ss_dssp CEEEEEEEESSTTSSHHHHHHHHHHS
T ss_pred CcceEEEEECcCCCCHHHHHHHHhcC
Confidence 35688999999999999999999753
No 206
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=96.60 E-value=0.0013 Score=63.24 Aligned_cols=29 Identities=34% Similarity=0.540 Sum_probs=25.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCeee
Q 022951 76 QWVFLGCPGVGKGTYASRLSNLLGVPHIA 104 (289)
Q Consensus 76 ~Ivl~GppGsGKSTlak~La~~lg~~~i~ 104 (289)
-++|+||||+||||+++.|+...+.+++.
T Consensus 66 GvLL~GppGtGKTtLaraIa~~~~~~~i~ 94 (499)
T 2dhr_A 66 GVLLVGPPGVGKTHLARAVAGEARVPFIT 94 (499)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHTTCCEEE
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCEEE
Confidence 38999999999999999999998766554
No 207
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=96.60 E-value=0.0015 Score=55.15 Aligned_cols=25 Identities=24% Similarity=0.264 Sum_probs=22.1
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHHHh
Q 022951 74 HVQWVFLGCPGVGKGTYASRLSNLL 98 (289)
Q Consensus 74 ~~~Ivl~GppGsGKSTlak~La~~l 98 (289)
.-++.|+||+||||||+++.|+..+
T Consensus 25 G~~~~l~G~nGsGKSTll~~l~g~~ 49 (231)
T 4a74_A 25 QAITEVFGEFGSGKTQLAHTLAVMV 49 (231)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH
Confidence 4678999999999999999998743
No 208
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=96.59 E-value=0.0014 Score=62.89 Aligned_cols=31 Identities=26% Similarity=0.314 Sum_probs=27.0
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHHHhCCCeee
Q 022951 74 HVQWVFLGCPGVGKGTYASRLSNLLGVPHIA 104 (289)
Q Consensus 74 ~~~Ivl~GppGsGKSTlak~La~~lg~~~i~ 104 (289)
+.-++|.||||+|||++|+.|+..++.+++.
T Consensus 238 ~~~vLL~GppGtGKT~lAraia~~~~~~fv~ 268 (489)
T 3hu3_A 238 PRGILLYGPPGTGKTLIARAVANETGAFFFL 268 (489)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHCSSEEEE
T ss_pred CCcEEEECcCCCCHHHHHHHHHHHhCCCEEE
Confidence 4568999999999999999999999876654
No 209
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=96.59 E-value=0.0011 Score=56.57 Aligned_cols=23 Identities=26% Similarity=0.472 Sum_probs=20.5
Q ss_pred CceEEEEEcCCCCCHHHHHHHHH
Q 022951 73 KHVQWVFLGCPGVGKGTYASRLS 95 (289)
Q Consensus 73 ~~~~Ivl~GppGsGKSTlak~La 95 (289)
+.-+++|+||+||||||+++.|+
T Consensus 29 ~G~~~~l~GpnGsGKSTLl~~i~ 51 (251)
T 2ehv_A 29 EGTTVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHH
Confidence 34678999999999999999988
No 210
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=96.59 E-value=0.0011 Score=60.26 Aligned_cols=26 Identities=27% Similarity=0.307 Sum_probs=23.2
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHHh
Q 022951 73 KHVQWVFLGCPGVGKGTYASRLSNLL 98 (289)
Q Consensus 73 ~~~~Ivl~GppGsGKSTlak~La~~l 98 (289)
.+..++|+||||+||||+++.+++.+
T Consensus 43 ~~~~vll~G~~G~GKT~l~~~~~~~~ 68 (387)
T 2v1u_A 43 KPSNALLYGLTGTGKTAVARLVLRRL 68 (387)
T ss_dssp CCCCEEECBCTTSSHHHHHHHHHHHH
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHHH
Confidence 34578999999999999999999987
No 211
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=96.59 E-value=0.0016 Score=58.68 Aligned_cols=26 Identities=31% Similarity=0.413 Sum_probs=23.5
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHHh
Q 022951 73 KHVQWVFLGCPGVGKGTYASRLSNLL 98 (289)
Q Consensus 73 ~~~~Ivl~GppGsGKSTlak~La~~l 98 (289)
++.+|.|+||+||||||+++.|+..+
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll 126 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYY 126 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHH
Confidence 46789999999999999999999876
No 212
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.58 E-value=0.0045 Score=54.76 Aligned_cols=22 Identities=36% Similarity=0.584 Sum_probs=21.0
Q ss_pred EEEEcCCCCCHHHHHHHHHHHh
Q 022951 77 WVFLGCPGVGKGTYASRLSNLL 98 (289)
Q Consensus 77 Ivl~GppGsGKSTlak~La~~l 98 (289)
++|.||+|+||||+++.+++.+
T Consensus 45 ~ll~G~~G~GKt~la~~l~~~l 66 (323)
T 1sxj_B 45 MIISGMPGIGKTTSVHCLAHEL 66 (323)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHHHh
Confidence 8999999999999999999986
No 213
>3shw_A Tight junction protein ZO-1; PDZ-SH3-GUK supramodule, cell adhesion; 2.90A {Homo sapiens}
Probab=96.58 E-value=0.0029 Score=60.33 Aligned_cols=150 Identities=9% Similarity=-0.012 Sum_probs=78.3
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHHHhCCCeee-hHHHHHHHHHcCCccCHHHHHHHHHHHHHcccccCCceEEEcCccc
Q 022951 72 GKHVQWVFLGCPGVGKGTYASRLSNLLGVPHIA-TGDLLDEIVSQGKLVSDEIIINLLSKRLEAGEAKGEAGFILDGFPR 150 (289)
Q Consensus 72 ~~~~~Ivl~GppGsGKSTlak~La~~lg~~~i~-~d~l~~~~l~~g~~v~~~~~~~ll~~~l~~~~~~~~~g~Ildg~p~ 150 (289)
..+..|||+||+|+| +.++|.+.+.-.+.+ +.. -+.--.+|....- +-...++..+.. ++.+|||--+.
T Consensus 222 ~~~r~iVlsGPsG~G---l~~~Ll~~~p~~f~s~~TR-pR~gE~dG~~Y~F-Ts~~~V~~vl~~-----Gk~~iLdId~q 291 (468)
T 3shw_A 222 GFLRPVTIFGPIADV---AREKLAREEPDIYQIAKSE-PRDAGTDQRSSGI-IRLHTIKQIIDQ-----DKHALLDVTPN 291 (468)
T ss_dssp SSCCCEEEESTTHHH---HHHHHHHHCTTTEEECCCB-C----------CB-CCHHHHHHHHTT-----TCEEEECCCHH
T ss_pred CCCCEEEEECCCHHH---HHHHHHHhCCCceeeecCC-CCCcccccccCCc-ccHHHHHHHHHC-----CCeEEEEeCHH
Confidence 355678999999999 888888877433333 211 1100001110000 112223333332 46888886554
Q ss_pred H-HHHhhcCCCcEEEEEecCHHHHHHHHhcccccccCCCccccccccccCCCCCCCCCCCCCCCCCccccCccccCCCcH
Q 022951 151 T-EILEGVTDIDLVINLKLREEALLAKCLGRRICSECGGNYNVACIDIKGENGNPGMYMGPLLPPPHCASKLITRSDDKE 229 (289)
Q Consensus 151 ~-~~l~~~~~~d~vI~Ld~~~e~l~~Rl~~R~~~~~~g~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~r~~d~~ 229 (289)
. +.++.....-++||+..|.-..++++.+|.. .+++
T Consensus 292 g~~~l~~~~~~p~~IFI~PPS~e~L~~~~~rl~-------------------------------------------~~se 328 (468)
T 3shw_A 292 AVDRLNYAQWYPIVVFLNPDSKQGVKTMRMRLC-------------------------------------------PESR 328 (468)
T ss_dssp HHHHHHHTTCCCEEEEEECSCHHHHHHHHHHHC-------------------------------------------TTCC
T ss_pred HHHHHHhcCCCCEEEEEeCcCHHHHHHHHhccC-------------------------------------------CCCH
Confidence 4 4454332233778887766555554444421 1122
Q ss_pred HHHHHHHHHHHHhchHHHHHHHHcCcEEEEeCCCCc-ccHHHHHHHHhccCC
Q 022951 230 EVVRERLRIYNEKSRPVEEFYRRRGKLLEFDLPGGI-PESWPKLLQALNLED 280 (289)
Q Consensus 230 ~~~~~rl~~y~~~~~~l~~~y~~~~~l~~id~~~~~-~ev~~~i~~~l~~~~ 280 (289)
+.++++++...+ ++..|.+...++.||. +. ++.+.+|.++|..+.
T Consensus 329 e~~~r~~~~a~~----~e~~~~~~fD~vIvNd--dl~d~a~~~L~~ii~~~~ 374 (468)
T 3shw_A 329 KSARKLYERSHK----LRKNNHHLFTTTINLN--SMNDGWYGALKEAIQQQQ 374 (468)
T ss_dssp CCHHHHHHHHHH----HHHHHGGGCSEEEECB--TTBCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH----HHHhhhccCCEEEECC--CcHHHHHHHHHHHHHHhc
Confidence 356666665432 2333444445666653 57 589999999987654
No 214
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=96.58 E-value=0.0025 Score=57.75 Aligned_cols=28 Identities=25% Similarity=0.352 Sum_probs=24.8
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHHHhCCC
Q 022951 74 HVQWVFLGCPGVGKGTYASRLSNLLGVP 101 (289)
Q Consensus 74 ~~~Ivl~GppGsGKSTlak~La~~lg~~ 101 (289)
++.++|.||+|+||||+|+.+++.+...
T Consensus 24 ~~a~L~~G~~G~GKt~~a~~la~~l~~~ 51 (334)
T 1a5t_A 24 HHALLIQALPGMGDDALIYALSRYLLCQ 51 (334)
T ss_dssp CSEEEEECCTTSCHHHHHHHHHHHHTCS
T ss_pred ceeEEEECCCCchHHHHHHHHHHHHhCC
Confidence 4568999999999999999999998654
No 215
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=96.58 E-value=0.0016 Score=53.43 Aligned_cols=26 Identities=31% Similarity=0.411 Sum_probs=22.7
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHHH
Q 022951 72 GKHVQWVFLGCPGVGKGTYASRLSNL 97 (289)
Q Consensus 72 ~~~~~Ivl~GppGsGKSTlak~La~~ 97 (289)
.....|+|+|.+|+||||+..+|...
T Consensus 23 ~~~~ki~v~G~~~~GKSsLi~~l~~~ 48 (193)
T 2oil_A 23 NFVFKVVLIGESGVGKTNLLSRFTRN 48 (193)
T ss_dssp SEEEEEEEESSTTSSHHHHHHHHHHS
T ss_pred CcceEEEEECcCCCCHHHHHHHHhcC
Confidence 34689999999999999999999763
No 216
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=96.57 E-value=0.0015 Score=59.20 Aligned_cols=26 Identities=23% Similarity=0.250 Sum_probs=23.2
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHHh
Q 022951 73 KHVQWVFLGCPGVGKGTYASRLSNLL 98 (289)
Q Consensus 73 ~~~~Ivl~GppGsGKSTlak~La~~l 98 (289)
.+..++|.||+|+||||+++.+++.+
T Consensus 44 ~~~~vli~G~~G~GKTtl~~~l~~~~ 69 (386)
T 2qby_A 44 KPNNIFIYGLTGTGKTAVVKFVLSKL 69 (386)
T ss_dssp CCCCEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 34578999999999999999999977
No 217
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=96.56 E-value=0.001 Score=60.40 Aligned_cols=26 Identities=8% Similarity=0.032 Sum_probs=23.6
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHHh
Q 022951 73 KHVQWVFLGCPGVGKGTYASRLSNLL 98 (289)
Q Consensus 73 ~~~~Ivl~GppGsGKSTlak~La~~l 98 (289)
.+..++|.||||+|||++++.+++.+
T Consensus 44 ~~~~lli~GpPGTGKT~~v~~v~~~L 69 (318)
T 3te6_A 44 QNKLFYITNADDSTKFQLVNDVMDEL 69 (318)
T ss_dssp CCCEEEEECCCSHHHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 45678999999999999999999988
No 218
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=96.56 E-value=0.007 Score=54.41 Aligned_cols=25 Identities=8% Similarity=-0.036 Sum_probs=22.4
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHHHh
Q 022951 74 HVQWVFLGCPGVGKGTYASRLSNLL 98 (289)
Q Consensus 74 ~~~Ivl~GppGsGKSTlak~La~~l 98 (289)
.+.++|.||||+||||+++.|++..
T Consensus 18 ~~~~Lf~Gp~G~GKtt~a~~la~~~ 42 (305)
T 2gno_A 18 GISILINGEDLSYPREVSLELPEYV 42 (305)
T ss_dssp SEEEEEECSSSSHHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhC
Confidence 4678999999999999999999864
No 219
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=96.54 E-value=0.0016 Score=53.82 Aligned_cols=25 Identities=28% Similarity=0.308 Sum_probs=22.0
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHHHh
Q 022951 74 HVQWVFLGCPGVGKGTYASRLSNLL 98 (289)
Q Consensus 74 ~~~Ivl~GppGsGKSTlak~La~~l 98 (289)
...++|+|++||||||+++.|...+
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~l 30 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPAL 30 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHhc
Confidence 3578899999999999999998865
No 220
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=96.53 E-value=0.0011 Score=54.23 Aligned_cols=27 Identities=30% Similarity=0.352 Sum_probs=21.7
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHHHH
Q 022951 71 EGKHVQWVFLGCPGVGKGTYASRLSNL 97 (289)
Q Consensus 71 ~~~~~~Ivl~GppGsGKSTlak~La~~ 97 (289)
..+..+|+|+|.+|+||||+.++|...
T Consensus 18 ~~~~~ki~v~G~~~~GKSsli~~l~~~ 44 (190)
T 2h57_A 18 GSKEVHVLCLGLDNSGKTTIINKLKPS 44 (190)
T ss_dssp ---CEEEEEEECTTSSHHHHHHHTSCG
T ss_pred CCCccEEEEECCCCCCHHHHHHHHhcC
Confidence 345689999999999999999988654
No 221
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=96.53 E-value=0.0019 Score=56.82 Aligned_cols=26 Identities=23% Similarity=0.282 Sum_probs=22.8
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHHh
Q 022951 73 KHVQWVFLGCPGVGKGTYASRLSNLL 98 (289)
Q Consensus 73 ~~~~Ivl~GppGsGKSTlak~La~~l 98 (289)
+.-+++|+||+||||||+.+.|+..+
T Consensus 24 ~g~~v~i~Gp~GsGKSTll~~l~g~~ 49 (261)
T 2eyu_A 24 KMGLILVTGPTGSGKSTTIASMIDYI 49 (261)
T ss_dssp SSEEEEEECSTTCSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCccHHHHHHHHHHhC
Confidence 45688999999999999999998865
No 222
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=96.51 E-value=0.0019 Score=58.81 Aligned_cols=27 Identities=37% Similarity=0.523 Sum_probs=24.2
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHHHh
Q 022951 72 GKHVQWVFLGCPGVGKGTYASRLSNLL 98 (289)
Q Consensus 72 ~~~~~Ivl~GppGsGKSTlak~La~~l 98 (289)
.++.+|.|+||+||||||+++.|+..+
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag~l 153 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLANWL 153 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 357899999999999999999999876
No 223
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=96.50 E-value=0.0015 Score=54.77 Aligned_cols=23 Identities=39% Similarity=0.596 Sum_probs=21.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHh
Q 022951 76 QWVFLGCPGVGKGTYASRLSNLL 98 (289)
Q Consensus 76 ~Ivl~GppGsGKSTlak~La~~l 98 (289)
++.|+|++||||||+.+.|+..+
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~~ 25 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEVL 25 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhhc
Confidence 57899999999999999999876
No 224
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=96.49 E-value=0.0019 Score=54.38 Aligned_cols=25 Identities=20% Similarity=0.256 Sum_probs=21.5
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHHHh
Q 022951 74 HVQWVFLGCPGVGKGTYASRLSNLL 98 (289)
Q Consensus 74 ~~~Ivl~GppGsGKSTlak~La~~l 98 (289)
.-+++|.|++||||||+++.|+..+
T Consensus 23 G~~~~i~G~~GsGKTtl~~~l~~~~ 47 (235)
T 2w0m_A 23 GFFIALTGEPGTGKTIFSLHFIAKG 47 (235)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 3578899999999999999998653
No 225
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=96.47 E-value=0.002 Score=61.41 Aligned_cols=25 Identities=36% Similarity=0.543 Sum_probs=22.4
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHHHh
Q 022951 74 HVQWVFLGCPGVGKGTYASRLSNLL 98 (289)
Q Consensus 74 ~~~Ivl~GppGsGKSTlak~La~~l 98 (289)
...++|+||||+|||++++.|++.+
T Consensus 201 ~~~~LL~G~pG~GKT~la~~la~~l 225 (468)
T 3pxg_A 201 KNNPVLIGEPGVGKTAIAEGLAQQI 225 (468)
T ss_dssp SCEEEEESCTTTTTHHHHHHHHHHH
T ss_pred CCCeEEECCCCCCHHHHHHHHHHHH
Confidence 3457899999999999999999997
No 226
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=96.45 E-value=0.0021 Score=58.00 Aligned_cols=27 Identities=22% Similarity=0.417 Sum_probs=23.9
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHHHh
Q 022951 72 GKHVQWVFLGCPGVGKGTYASRLSNLL 98 (289)
Q Consensus 72 ~~~~~Ivl~GppGsGKSTlak~La~~l 98 (289)
..+.+|+|+|++||||||++..||..+
T Consensus 102 ~~~~vi~ivG~~GsGKTTl~~~LA~~l 128 (306)
T 1vma_A 102 EPPFVIMVVGVNGTGKTTSCGKLAKMF 128 (306)
T ss_dssp SSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEEcCCCChHHHHHHHHHHHH
Confidence 346789999999999999999999876
No 227
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=96.44 E-value=0.0019 Score=54.65 Aligned_cols=24 Identities=21% Similarity=0.234 Sum_probs=20.6
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHHH
Q 022951 74 HVQWVFLGCPGVGKGTYASRLSNL 97 (289)
Q Consensus 74 ~~~Ivl~GppGsGKSTlak~La~~ 97 (289)
+|+++|+|+||||||++|..+...
T Consensus 5 ~mi~l~tG~pGsGKT~~a~~~~~~ 28 (199)
T 2r2a_A 5 AEICLITGTPGSGKTLKMVSMMAN 28 (199)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred eeEEEEEeCCCCCHHHHHHHHHHH
Confidence 578999999999999999886443
No 228
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=96.44 E-value=0.0017 Score=66.04 Aligned_cols=34 Identities=24% Similarity=0.264 Sum_probs=28.5
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHHHhCCCeeeh
Q 022951 72 GKHVQWVFLGCPGVGKGTYASRLSNLLGVPHIAT 105 (289)
Q Consensus 72 ~~~~~Ivl~GppGsGKSTlak~La~~lg~~~i~~ 105 (289)
..+..|+|+|||||||||+++.|+..++..++.+
T Consensus 236 ~~~~~vLL~Gp~GtGKTtLarala~~l~~~~i~v 269 (806)
T 1ypw_A 236 KPPRGILLYGPPGTGKTLIARAVANETGAFFFLI 269 (806)
T ss_dssp CCCCEEEECSCTTSSHHHHHHHHHHTTTCEEEEE
T ss_pred CCCCeEEEECcCCCCHHHHHHHHHHHcCCcEEEE
Confidence 3455799999999999999999999998766543
No 229
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=96.43 E-value=0.002 Score=58.13 Aligned_cols=30 Identities=30% Similarity=0.465 Sum_probs=25.0
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhCCCe
Q 022951 73 KHVQWVFLGCPGVGKGTYASRLSNLLGVPH 102 (289)
Q Consensus 73 ~~~~Ivl~GppGsGKSTlak~La~~lg~~~ 102 (289)
+.-+++|+||+||||||+++.|+..+....
T Consensus 125 ~Ge~vaIvGpsGsGKSTLl~lL~gl~~G~I 154 (305)
T 2v9p_A 125 KKNCLAFIGPPNTGKSMLCNSLIHFLGGSV 154 (305)
T ss_dssp TCSEEEEECSSSSSHHHHHHHHHHHHTCEE
T ss_pred CCCEEEEECCCCCcHHHHHHHHhhhcCceE
Confidence 456789999999999999999998874333
No 230
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=96.41 E-value=0.0019 Score=54.02 Aligned_cols=32 Identities=31% Similarity=0.208 Sum_probs=24.9
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHHHhC--CCeeeh
Q 022951 74 HVQWVFLGCPGVGKGTYASRLSNLLG--VPHIAT 105 (289)
Q Consensus 74 ~~~Ivl~GppGsGKSTlak~La~~lg--~~~i~~ 105 (289)
..+++|.|+|||||||++..|+...+ +.+++.
T Consensus 20 G~~~~i~G~~GsGKTtl~~~l~~~~~~~v~~i~~ 53 (220)
T 2cvh_A 20 GVLTQVYGPYASGKTTLALQTGLLSGKKVAYVDT 53 (220)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHHHHCSEEEEEES
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHcCCcEEEEEC
Confidence 45789999999999999999987433 344554
No 231
>3tsz_A Tight junction protein ZO-1; PDZ3-SH3-GUK, scaffolding, JAM, tight junction, cell adhesio; 2.50A {Homo sapiens} PDB: 3tsw_A 3lh5_A
Probab=96.41 E-value=0.0065 Score=56.64 Aligned_cols=143 Identities=9% Similarity=-0.010 Sum_probs=78.9
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhCCCeeehHHHHHHHHHcCC-------ccCHHHHHHHHHHHHHcccccCCceEEE
Q 022951 73 KHVQWVFLGCPGVGKGTYASRLSNLLGVPHIATGDLLDEIVSQGK-------LVSDEIIINLLSKRLEAGEAKGEAGFIL 145 (289)
Q Consensus 73 ~~~~Ivl~GppGsGKSTlak~La~~lg~~~i~~d~l~~~~l~~g~-------~v~~~~~~~ll~~~l~~~~~~~~~g~Il 145 (289)
.+..|||+||+| +|+.++|.+.+.-.+.++ ... ...|+ +++- ..+++.+.. +..+||
T Consensus 231 ~~r~iVlsGPsg---~tl~~~L~~~~p~~~~~~---tr~-pR~gE~dG~~Y~Fv~~----~~V~~~~~~-----Gk~~iL 294 (391)
T 3tsz_A 231 FLRPVTIFGPIA---DVAREKLAREEPDIYQIA---KSE-PRDAGTDQRSSGIIRL----HTIKQIIDQ-----DKHALL 294 (391)
T ss_dssp SCCCEEEESTTH---HHHHHHHHHHCTTTEEEC---CCC-CCCSSSCCC--CCCCH----HHHHHHHTT-----TCEEEE
T ss_pred CCCEEEEECCCH---HHHHHHHHhhCccccccc---cCC-CCCcccCCccCCcCcH----HHHHHHHHc-----CCEEEE
Confidence 556789999998 899999998875434432 100 11121 2322 223333332 568899
Q ss_pred cCcccH-HHHhhcCCCcEEEEEecCHHHHHHHHhcccccccCCCccccccccccCCCCCCCCCCCCCCCCCccccCcccc
Q 022951 146 DGFPRT-EILEGVTDIDLVINLKLREEALLAKCLGRRICSECGGNYNVACIDIKGENGNPGMYMGPLLPPPHCASKLITR 224 (289)
Q Consensus 146 dg~p~~-~~l~~~~~~d~vI~Ld~~~e~l~~Rl~~R~~~~~~g~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~r 224 (289)
|--+.. ..+......-++||+..|.-..++++.+|..
T Consensus 295 dId~qg~~~l~~~~~~p~~IFI~PPS~~~L~~~~~r~~------------------------------------------ 332 (391)
T 3tsz_A 295 DVTPNAVDRLNYAQWYPIVVFLNPDSKQGVKTMRMRLC------------------------------------------ 332 (391)
T ss_dssp CCCHHHHHHHHHTTCCCEEEEEECCCHHHHHHHHHHHC------------------------------------------
T ss_pred EeCHHHHHHHHhCCCCCEEEEEeCcCHHHHHHHHhcCC------------------------------------------
Confidence 875544 4454332233677777765444444444431
Q ss_pred CCCcHHHHHHHHHHHHHhchHHHHHHHHcCcEEEEeCCCCcc-cHHHHHHHHhccCC
Q 022951 225 SDDKEEVVRERLRIYNEKSRPVEEFYRRRGKLLEFDLPGGIP-ESWPKLLQALNLED 280 (289)
Q Consensus 225 ~~d~~~~~~~rl~~y~~~~~~l~~~y~~~~~l~~id~~~~~~-ev~~~i~~~l~~~~ 280 (289)
.++++.++++++...+ ++..|.+...++.||. +.+ ..+.+|.++|..+.
T Consensus 333 -~~s~e~~~~~~~~a~~----~e~~~~~~fd~vivNd--~l~~~a~~~l~~ii~~~~ 382 (391)
T 3tsz_A 333 -PESRKSARKLYERSHK----LRKNNHHLFTTTINLN--SMNDGWYGALKEAIQQQQ 382 (391)
T ss_dssp -SSCCCCHHHHHHHHHH----HHHHHGGGCSEEEECC--TTCCHHHHHHHHHHHHHH
T ss_pred -CCCHHHHHHHHHHHHH----HHHhccccCcEEEECC--CcHHHHHHHHHHHHHHhc
Confidence 1222345666655432 2333444445666653 576 58999999887653
No 232
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=96.39 E-value=0.0023 Score=53.17 Aligned_cols=25 Identities=20% Similarity=0.012 Sum_probs=20.9
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHHHh
Q 022951 74 HVQWVFLGCPGVGKGTYASRLSNLL 98 (289)
Q Consensus 74 ~~~Ivl~GppGsGKSTlak~La~~l 98 (289)
..+++++|++||||||++..++..+
T Consensus 3 g~i~vi~G~~gsGKTT~ll~~~~~~ 27 (184)
T 2orw_A 3 GKLTVITGPMYSGKTTELLSFVEIY 27 (184)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHH
Confidence 3578899999999999997777654
No 233
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=96.38 E-value=0.0024 Score=57.40 Aligned_cols=27 Identities=30% Similarity=0.379 Sum_probs=24.0
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHHHh
Q 022951 72 GKHVQWVFLGCPGVGKGTYASRLSNLL 98 (289)
Q Consensus 72 ~~~~~Ivl~GppGsGKSTlak~La~~l 98 (289)
.++.++.|+||.||||||+++.|+..+
T Consensus 98 ~~g~vi~lvG~nGsGKTTll~~Lag~l 124 (302)
T 3b9q_A 98 RKPAVIMIVGVNGGGKTTSLGKLAHRL 124 (302)
T ss_dssp SSCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 346789999999999999999999876
No 234
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=96.36 E-value=0.0023 Score=52.47 Aligned_cols=26 Identities=23% Similarity=0.345 Sum_probs=22.3
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHHH
Q 022951 72 GKHVQWVFLGCPGVGKGTYASRLSNL 97 (289)
Q Consensus 72 ~~~~~Ivl~GppGsGKSTlak~La~~ 97 (289)
.+..+|+|+|.+|+||||+..+|...
T Consensus 19 ~~~~ki~vvG~~~vGKTsLi~~l~~~ 44 (187)
T 3c5c_A 19 PLEVNLAILGRRGAGKSALTVKFLTK 44 (187)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred CceEEEEEECCCCCcHHHHHHHHHhC
Confidence 45689999999999999999998764
No 235
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=96.34 E-value=0.0034 Score=51.12 Aligned_cols=27 Identities=30% Similarity=0.373 Sum_probs=23.7
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHHHH
Q 022951 71 EGKHVQWVFLGCPGVGKGTYASRLSNL 97 (289)
Q Consensus 71 ~~~~~~Ivl~GppGsGKSTlak~La~~ 97 (289)
..+.++|+|+|++|+||||+..+|...
T Consensus 4 ~~~~~ki~v~G~~~~GKSsli~~l~~~ 30 (208)
T 3clv_A 4 KKSSYKTVLLGESSVGKSSIVLRLTKD 30 (208)
T ss_dssp CCSSEEEEEECCTTSSHHHHHHHHHHS
T ss_pred CCcceEEEEECCCCCCHHHHHHHHHhC
Confidence 345789999999999999999999875
No 236
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=96.33 E-value=0.002 Score=52.34 Aligned_cols=27 Identities=19% Similarity=0.213 Sum_probs=21.8
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHHHH
Q 022951 71 EGKHVQWVFLGCPGVGKGTYASRLSNL 97 (289)
Q Consensus 71 ~~~~~~Ivl~GppGsGKSTlak~La~~ 97 (289)
..+..+|+|+|.+|+||||+..+|...
T Consensus 18 ~~~~~~i~v~G~~~~GKSsli~~l~~~ 44 (181)
T 2h17_A 18 GSQEHKVIIVGLDNAGKTTILYQFSMN 44 (181)
T ss_dssp ---CEEEEEEEETTSSHHHHHHHHHTT
T ss_pred CCceeEEEEECCCCCCHHHHHHHHhcC
Confidence 345689999999999999999999753
No 237
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=96.33 E-value=0.0012 Score=54.47 Aligned_cols=24 Identities=25% Similarity=0.425 Sum_probs=21.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHh
Q 022951 75 VQWVFLGCPGVGKGTYASRLSNLL 98 (289)
Q Consensus 75 ~~Ivl~GppGsGKSTlak~La~~l 98 (289)
.++.|+|++||||||+++.|+..|
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~ 26 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPIL 26 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 368899999999999999999876
No 238
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=96.32 E-value=0.0029 Score=57.58 Aligned_cols=23 Identities=35% Similarity=0.525 Sum_probs=21.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHh
Q 022951 76 QWVFLGCPGVGKGTYASRLSNLL 98 (289)
Q Consensus 76 ~Ivl~GppGsGKSTlak~La~~l 98 (289)
.++|+||+|+||||+++.+++.+
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~~~ 68 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWELY 68 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHH
Confidence 78999999999999999999987
No 239
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.32 E-value=0.0021 Score=57.82 Aligned_cols=23 Identities=35% Similarity=0.491 Sum_probs=21.3
Q ss_pred EEEEcCCCCCHHHHHHHHHHHhC
Q 022951 77 WVFLGCPGVGKGTYASRLSNLLG 99 (289)
Q Consensus 77 Ivl~GppGsGKSTlak~La~~lg 99 (289)
++|.||||+||||+++.|++.++
T Consensus 61 ~ll~G~~G~GKT~la~~la~~l~ 83 (353)
T 1sxj_D 61 MLFYGPPGTGKTSTILALTKELY 83 (353)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 89999999999999999999863
No 240
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=96.31 E-value=0.0021 Score=55.99 Aligned_cols=25 Identities=36% Similarity=0.420 Sum_probs=21.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhC
Q 022951 75 VQWVFLGCPGVGKGTYASRLSNLLG 99 (289)
Q Consensus 75 ~~Ivl~GppGsGKSTlak~La~~lg 99 (289)
..++|+|+||+|||++|+.|++..+
T Consensus 30 ~~vll~G~~GtGKt~la~~i~~~~~ 54 (265)
T 2bjv_A 30 KPVLIIGERGTGKELIASRLHYLSS 54 (265)
T ss_dssp SCEEEECCTTSCHHHHHHHHHHTST
T ss_pred CCEEEECCCCCcHHHHHHHHHHhcC
Confidence 3478999999999999999998764
No 241
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.31 E-value=0.0021 Score=58.19 Aligned_cols=23 Identities=30% Similarity=0.481 Sum_probs=21.3
Q ss_pred EEEEcCCCCCHHHHHHHHHHHhC
Q 022951 77 WVFLGCPGVGKGTYASRLSNLLG 99 (289)
Q Consensus 77 Ivl~GppGsGKSTlak~La~~lg 99 (289)
++|.||||+||||+++.|++.+.
T Consensus 49 ~ll~Gp~G~GKTtla~~la~~l~ 71 (340)
T 1sxj_C 49 LLFYGPPGTGKTSTIVALAREIY 71 (340)
T ss_dssp EEEECSSSSSHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHc
Confidence 88999999999999999999863
No 242
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=96.31 E-value=0.003 Score=51.74 Aligned_cols=27 Identities=19% Similarity=0.244 Sum_probs=22.8
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHHHH
Q 022951 71 EGKHVQWVFLGCPGVGKGTYASRLSNL 97 (289)
Q Consensus 71 ~~~~~~Ivl~GppGsGKSTlak~La~~ 97 (289)
..+.++|+|+|.+|+||||+..+|...
T Consensus 17 ~~~~~ki~ivG~~~vGKSsL~~~~~~~ 43 (184)
T 3ihw_A 17 QGPELKVGIVGNLSSGKSALVHRYLTG 43 (184)
T ss_dssp CCCEEEEEEECCTTSCHHHHHHHHHHS
T ss_pred CCCeeEEEEECCCCCCHHHHHHHHhcC
Confidence 345689999999999999999888653
No 243
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=96.30 E-value=0.0031 Score=51.51 Aligned_cols=25 Identities=20% Similarity=0.380 Sum_probs=22.2
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHH
Q 022951 73 KHVQWVFLGCPGVGKGTYASRLSNL 97 (289)
Q Consensus 73 ~~~~Ivl~GppGsGKSTlak~La~~ 97 (289)
...+|+|+|.+|+||||+..+|...
T Consensus 21 ~~~ki~vvG~~~~GKSsli~~l~~~ 45 (189)
T 2gf9_A 21 YMFKLLLIGNSSVGKTSFLFRYADD 45 (189)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcC
Confidence 4689999999999999999998753
No 244
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=96.30 E-value=0.0028 Score=50.19 Aligned_cols=25 Identities=24% Similarity=0.343 Sum_probs=22.2
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHH
Q 022951 73 KHVQWVFLGCPGVGKGTYASRLSNL 97 (289)
Q Consensus 73 ~~~~Ivl~GppGsGKSTlak~La~~ 97 (289)
...+|+|+|++|+||||+.++|...
T Consensus 4 ~~~~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 4 VAIKMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHC
T ss_pred eeEEEEEECcCCCCHHHHHHHHHcC
Confidence 4678999999999999999999763
No 245
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=96.29 E-value=0.0027 Score=51.93 Aligned_cols=26 Identities=15% Similarity=0.290 Sum_probs=22.8
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHHH
Q 022951 72 GKHVQWVFLGCPGVGKGTYASRLSNL 97 (289)
Q Consensus 72 ~~~~~Ivl~GppGsGKSTlak~La~~ 97 (289)
.+.++|+|+|.+|+||||+..+|...
T Consensus 20 ~~~~ki~v~G~~~~GKSsli~~l~~~ 45 (188)
T 1zd9_A 20 KEEMELTLVGLQYSGKTTFVNVIASG 45 (188)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred CCccEEEEECCCCCCHHHHHHHHHcC
Confidence 35689999999999999999999753
No 246
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=96.27 E-value=0.0028 Score=57.56 Aligned_cols=26 Identities=35% Similarity=0.503 Sum_probs=23.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhCC
Q 022951 75 VQWVFLGCPGVGKGTYASRLSNLLGV 100 (289)
Q Consensus 75 ~~Ivl~GppGsGKSTlak~La~~lg~ 100 (289)
..++|.||+|+||||+++.+++.++.
T Consensus 39 ~~~ll~G~~G~GKT~la~~la~~l~~ 64 (373)
T 1jr3_A 39 HAYLFSGTRGVGKTSIARLLAKGLNC 64 (373)
T ss_dssp SEEEEESCTTSSHHHHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 46899999999999999999998864
No 247
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=96.25 E-value=0.0023 Score=55.39 Aligned_cols=26 Identities=23% Similarity=0.210 Sum_probs=21.9
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHHh
Q 022951 73 KHVQWVFLGCPGVGKGTYASRLSNLL 98 (289)
Q Consensus 73 ~~~~Ivl~GppGsGKSTlak~La~~l 98 (289)
..-++.|+||.||||||+.+.|+..+
T Consensus 30 ~Ge~~~iiG~nGsGKSTLl~~l~Gl~ 55 (235)
T 3tif_A 30 EGEFVSIMGPSGSGKSTMLNIIGCLD 55 (235)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 34578999999999999999997544
No 248
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.25 E-value=0.0024 Score=57.70 Aligned_cols=22 Identities=27% Similarity=0.360 Sum_probs=20.7
Q ss_pred EEEEcCCCCCHHHHHHHHHHHh
Q 022951 77 WVFLGCPGVGKGTYASRLSNLL 98 (289)
Q Consensus 77 Ivl~GppGsGKSTlak~La~~l 98 (289)
++|.||+|+||||+++.|+..+
T Consensus 39 ~ll~Gp~G~GKTtl~~~la~~l 60 (354)
T 1sxj_E 39 LLLYGPNGTGKKTRCMALLESI 60 (354)
T ss_dssp EEEECSTTSSHHHHHHTHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 8999999999999999999965
No 249
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=96.24 E-value=0.0038 Score=50.04 Aligned_cols=26 Identities=15% Similarity=0.157 Sum_probs=22.8
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHHH
Q 022951 71 EGKHVQWVFLGCPGVGKGTYASRLSN 96 (289)
Q Consensus 71 ~~~~~~Ivl~GppGsGKSTlak~La~ 96 (289)
..+..+|+|+|++|+||||+..+|..
T Consensus 5 ~~~~~~i~v~G~~~~GKssl~~~l~~ 30 (178)
T 2lkc_A 5 VERPPVVTIMGHVDHGKTTLLDAIRH 30 (178)
T ss_dssp CCCCCEEEEESCTTTTHHHHHHHHHT
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhC
Confidence 44678899999999999999999965
No 250
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=96.23 E-value=0.0014 Score=59.14 Aligned_cols=23 Identities=35% Similarity=0.456 Sum_probs=21.9
Q ss_pred EEEEcCCCCCHHHHHHHHHHHhC
Q 022951 77 WVFLGCPGVGKGTYASRLSNLLG 99 (289)
Q Consensus 77 Ivl~GppGsGKSTlak~La~~lg 99 (289)
++|.||||+|||++|+.|++.++
T Consensus 48 vLl~G~~GtGKT~la~~la~~~~ 70 (350)
T 1g8p_A 48 VLVFGDRGTGKSTAVRALAALLP 70 (350)
T ss_dssp EEEECCGGGCTTHHHHHHHHHSC
T ss_pred EEEECCCCccHHHHHHHHHHhCc
Confidence 89999999999999999999876
No 251
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=96.23 E-value=0.0033 Score=56.29 Aligned_cols=26 Identities=27% Similarity=0.431 Sum_probs=22.9
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHHh
Q 022951 73 KHVQWVFLGCPGVGKGTYASRLSNLL 98 (289)
Q Consensus 73 ~~~~Ivl~GppGsGKSTlak~La~~l 98 (289)
++.+|+|+|++||||||++..|+..+
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~l 129 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAIS 129 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 45688999999999999999998765
No 252
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=96.23 E-value=0.0029 Score=52.19 Aligned_cols=25 Identities=32% Similarity=0.457 Sum_probs=22.2
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHH
Q 022951 73 KHVQWVFLGCPGVGKGTYASRLSNL 97 (289)
Q Consensus 73 ~~~~Ivl~GppGsGKSTlak~La~~ 97 (289)
...+|+|+|++||||||+.+.|+..
T Consensus 28 ~~~kv~lvG~~g~GKSTLl~~l~~~ 52 (191)
T 1oix_A 28 YLFKVVLIGDSGVGKSNLLSRFTRN 52 (191)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHS
T ss_pred cceEEEEECcCCCCHHHHHHHHhcC
Confidence 3578999999999999999999864
No 253
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=96.22 E-value=0.0023 Score=58.82 Aligned_cols=28 Identities=18% Similarity=0.317 Sum_probs=24.7
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHHHhCCC
Q 022951 74 HVQWVFLGCPGVGKGTYASRLSNLLGVP 101 (289)
Q Consensus 74 ~~~Ivl~GppGsGKSTlak~La~~lg~~ 101 (289)
..+++|+|++||||||+++.|+..+...
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl~~~~ 197 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAVFNTT 197 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHHTTCE
T ss_pred hCeEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 4678999999999999999999987654
No 254
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=96.20 E-value=0.0032 Score=59.50 Aligned_cols=37 Identities=19% Similarity=0.310 Sum_probs=28.9
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHHHh-----CC--CeeehHHHHH
Q 022951 74 HVQWVFLGCPGVGKGTYASRLSNLL-----GV--PHIATGDLLD 110 (289)
Q Consensus 74 ~~~Ivl~GppGsGKSTlak~La~~l-----g~--~~i~~d~l~~ 110 (289)
...++|.||||+||||+++.++..+ +. .+++..++..
T Consensus 130 ~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~~~~~~~ 173 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKFLN 173 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEEHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHHH
Confidence 4568999999999999999999876 43 4566655543
No 255
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=96.20 E-value=0.0027 Score=53.95 Aligned_cols=24 Identities=17% Similarity=0.036 Sum_probs=21.5
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHHH
Q 022951 74 HVQWVFLGCPGVGKGTYASRLSNL 97 (289)
Q Consensus 74 ~~~Ivl~GppGsGKSTlak~La~~ 97 (289)
..+++|.||+||||||++..|+..
T Consensus 24 G~~~~i~G~~GsGKTtl~~~l~~~ 47 (243)
T 1n0w_A 24 GSITEMFGEFRTGKTQICHTLAVT 47 (243)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHHHH
Confidence 457899999999999999999984
No 256
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=96.19 E-value=0.0034 Score=49.40 Aligned_cols=24 Identities=29% Similarity=0.415 Sum_probs=21.3
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHHH
Q 022951 74 HVQWVFLGCPGVGKGTYASRLSNL 97 (289)
Q Consensus 74 ~~~Ivl~GppGsGKSTlak~La~~ 97 (289)
...|+|+|++|+||||+..+|...
T Consensus 3 ~~~i~v~G~~~~GKSsli~~l~~~ 26 (167)
T 1kao_A 3 EYKVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEEECCCCCCHHHHHHHHHcC
Confidence 478999999999999999998753
No 257
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=96.19 E-value=0.0045 Score=58.49 Aligned_cols=26 Identities=27% Similarity=0.400 Sum_probs=23.4
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHHh
Q 022951 73 KHVQWVFLGCPGVGKGTYASRLSNLL 98 (289)
Q Consensus 73 ~~~~Ivl~GppGsGKSTlak~La~~l 98 (289)
++.+|+|+|++||||||++..|+..+
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l 121 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFY 121 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 57889999999999999999999766
No 258
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=96.19 E-value=0.0031 Score=52.31 Aligned_cols=31 Identities=16% Similarity=0.263 Sum_probs=25.8
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHHHhCCCeeeh
Q 022951 74 HVQWVFLGCPGVGKGTYASRLSNLLGVPHIAT 105 (289)
Q Consensus 74 ~~~Ivl~GppGsGKSTlak~La~~lg~~~i~~ 105 (289)
..-++|+|++|+||||+|..|.+. |..+++-
T Consensus 16 G~gvli~G~SGaGKStlal~L~~r-G~~lvaD 46 (181)
T 3tqf_A 16 KMGVLITGEANIGKSELSLALIDR-GHQLVCD 46 (181)
T ss_dssp TEEEEEEESSSSSHHHHHHHHHHT-TCEEEES
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHc-CCeEecC
Confidence 456899999999999999999874 7766654
No 259
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=96.18 E-value=0.0034 Score=49.29 Aligned_cols=24 Identities=29% Similarity=0.444 Sum_probs=21.3
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHHH
Q 022951 74 HVQWVFLGCPGVGKGTYASRLSNL 97 (289)
Q Consensus 74 ~~~Ivl~GppGsGKSTlak~La~~ 97 (289)
..+|+|+|.+|+||||+...|...
T Consensus 3 ~~~i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 3 EYKLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred eeEEEEECCCCCCHHHHHHHHHhC
Confidence 467999999999999999999764
No 260
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=96.18 E-value=0.0022 Score=55.01 Aligned_cols=25 Identities=28% Similarity=0.215 Sum_probs=21.3
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHHHh
Q 022951 74 HVQWVFLGCPGVGKGTYASRLSNLL 98 (289)
Q Consensus 74 ~~~Ivl~GppGsGKSTlak~La~~l 98 (289)
.-++.|+||.||||||+.+.|+..+
T Consensus 30 Ge~~~iiG~nGsGKSTLl~~l~Gl~ 54 (224)
T 2pcj_A 30 GEFVSIIGASGSGKSTLLYILGLLD 54 (224)
T ss_dssp TCEEEEEECTTSCHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3578899999999999999997544
No 261
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=96.18 E-value=0.0033 Score=52.02 Aligned_cols=24 Identities=33% Similarity=0.505 Sum_probs=21.6
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHHH
Q 022951 74 HVQWVFLGCPGVGKGTYASRLSNL 97 (289)
Q Consensus 74 ~~~Ivl~GppGsGKSTlak~La~~ 97 (289)
..+|+|+|++||||||+.+.|...
T Consensus 5 ~~kv~lvG~~g~GKSTLl~~l~~~ 28 (199)
T 2f9l_A 5 LFKVVLIGDSGVGKSNLLSRFTRN 28 (199)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECcCCCCHHHHHHHHhcC
Confidence 478999999999999999999864
No 262
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=96.17 E-value=0.0036 Score=50.03 Aligned_cols=26 Identities=19% Similarity=0.409 Sum_probs=22.7
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHHH
Q 022951 72 GKHVQWVFLGCPGVGKGTYASRLSNL 97 (289)
Q Consensus 72 ~~~~~Ivl~GppGsGKSTlak~La~~ 97 (289)
.+..+|+|+|.+|+||||+.++|...
T Consensus 13 ~~~~~i~v~G~~~~GKSsli~~l~~~ 38 (179)
T 1z0f_A 13 SYIFKYIIIGDMGVGKSCLLHQFTEK 38 (179)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ccceEEEEECCCCCCHHHHHHHHHcC
Confidence 34688999999999999999999764
No 263
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=96.17 E-value=0.0035 Score=52.39 Aligned_cols=27 Identities=15% Similarity=0.124 Sum_probs=23.5
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHHHh
Q 022951 72 GKHVQWVFLGCPGVGKGTYASRLSNLL 98 (289)
Q Consensus 72 ~~~~~Ivl~GppGsGKSTlak~La~~l 98 (289)
.+...|+|+|++|+||||+..+|....
T Consensus 10 ~~~~~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 10 SYQPSIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp CCCCEEEEECSTTSSHHHHHHHHHHSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 356789999999999999999998754
No 264
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=96.16 E-value=0.0028 Score=55.02 Aligned_cols=24 Identities=25% Similarity=0.488 Sum_probs=21.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHh
Q 022951 75 VQWVFLGCPGVGKGTYASRLSNLL 98 (289)
Q Consensus 75 ~~Ivl~GppGsGKSTlak~La~~l 98 (289)
-++.|.||.||||||+.+.|+..+
T Consensus 25 e~~~liG~nGsGKSTLl~~l~Gl~ 48 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIAGIV 48 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEEECCCCCCHHHHHHHHhCCC
Confidence 578899999999999999998654
No 265
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=96.16 E-value=0.0026 Score=51.78 Aligned_cols=28 Identities=18% Similarity=0.122 Sum_probs=23.6
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHHHhC
Q 022951 72 GKHVQWVFLGCPGVGKGTYASRLSNLLG 99 (289)
Q Consensus 72 ~~~~~Ivl~GppGsGKSTlak~La~~lg 99 (289)
....+|+|+|.+|+||||+.+.|...+.
T Consensus 12 ~~~~ki~vvG~~~~GKssL~~~l~~~~~ 39 (198)
T 3t1o_A 12 EINFKIVYYGPGLSGKTTNLKWIYSKVP 39 (198)
T ss_dssp EEEEEEEEECSTTSSHHHHHHHHHHTSC
T ss_pred ccccEEEEECCCCCCHHHHHHHHHhhcc
Confidence 3468899999999999999988876553
No 266
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=96.16 E-value=0.0035 Score=63.19 Aligned_cols=33 Identities=27% Similarity=0.386 Sum_probs=27.3
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHHHh----------CCCeeehH
Q 022951 74 HVQWVFLGCPGVGKGTYASRLSNLL----------GVPHIATG 106 (289)
Q Consensus 74 ~~~Ivl~GppGsGKSTlak~La~~l----------g~~~i~~d 106 (289)
...++|.||||+|||++|+.|++.+ +..++..+
T Consensus 201 ~~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~ 243 (758)
T 3pxi_A 201 KNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLD 243 (758)
T ss_dssp SCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC-
T ss_pred CCCeEEECCCCCCHHHHHHHHHHHHhcCCCChhhcCCeEEEec
Confidence 3468999999999999999999997 66676653
No 267
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=96.16 E-value=0.0034 Score=50.31 Aligned_cols=23 Identities=30% Similarity=0.517 Sum_probs=20.7
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHH
Q 022951 74 HVQWVFLGCPGVGKGTYASRLSN 96 (289)
Q Consensus 74 ~~~Ivl~GppGsGKSTlak~La~ 96 (289)
..+|+|+|++|+||||+.++|..
T Consensus 3 ~~~v~lvG~~gvGKStL~~~l~~ 25 (165)
T 2wji_A 3 SYEIALIGNPNVGKSTIFNALTG 25 (165)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHC
T ss_pred ccEEEEECCCCCCHHHHHHHHhC
Confidence 36899999999999999999974
No 268
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=96.15 E-value=0.0035 Score=51.16 Aligned_cols=26 Identities=19% Similarity=0.300 Sum_probs=22.2
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHHH
Q 022951 72 GKHVQWVFLGCPGVGKGTYASRLSNL 97 (289)
Q Consensus 72 ~~~~~Ivl~GppGsGKSTlak~La~~ 97 (289)
.+..+|+|+|.+|+||||+..+|...
T Consensus 18 ~~~~ki~v~G~~~~GKSsli~~l~~~ 43 (189)
T 1z06_A 18 SRIFKIIVIGDSNVGKTCLTYRFCAG 43 (189)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred CceEEEEEECCCCCCHHHHHHHHHcC
Confidence 35689999999999999999998753
No 269
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=96.15 E-value=0.0036 Score=55.47 Aligned_cols=26 Identities=15% Similarity=0.170 Sum_probs=22.4
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHHh
Q 022951 73 KHVQWVFLGCPGVGKGTYASRLSNLL 98 (289)
Q Consensus 73 ~~~~Ivl~GppGsGKSTlak~La~~l 98 (289)
+.-+++|.|+|||||||+++.|+..+
T Consensus 34 ~G~~~~i~G~~G~GKTTl~~~ia~~~ 59 (296)
T 1cr0_A 34 GGEVIMVTSGSGMGKSTFVRQQALQW 59 (296)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHH
Confidence 34578999999999999999998765
No 270
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=96.14 E-value=0.0037 Score=55.47 Aligned_cols=24 Identities=46% Similarity=0.546 Sum_probs=21.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHhC
Q 022951 76 QWVFLGCPGVGKGTYASRLSNLLG 99 (289)
Q Consensus 76 ~Ivl~GppGsGKSTlak~La~~lg 99 (289)
.++|.||||+||||+++.+++.+.
T Consensus 48 ~~ll~G~~G~GKT~la~~l~~~l~ 71 (327)
T 1iqp_A 48 HLLFAGPPGVGKTTAALALARELF 71 (327)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHHH
T ss_pred eEEEECcCCCCHHHHHHHHHHHhc
Confidence 389999999999999999999863
No 271
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=96.14 E-value=0.0038 Score=57.57 Aligned_cols=27 Identities=30% Similarity=0.379 Sum_probs=24.1
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHHHh
Q 022951 72 GKHVQWVFLGCPGVGKGTYASRLSNLL 98 (289)
Q Consensus 72 ~~~~~Ivl~GppGsGKSTlak~La~~l 98 (289)
.++-+|.|+||.||||||+++.|+..+
T Consensus 155 ~~g~vi~lvG~nGsGKTTll~~Lag~l 181 (359)
T 2og2_A 155 RKPAVIMIVGVNGGGKTTSLGKLAHRL 181 (359)
T ss_dssp SSSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCeEEEEEcCCCChHHHHHHHHHhhc
Confidence 356789999999999999999999876
No 272
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=96.13 E-value=0.0026 Score=51.94 Aligned_cols=23 Identities=26% Similarity=0.479 Sum_probs=20.3
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHH
Q 022951 74 HVQWVFLGCPGVGKGTYASRLSN 96 (289)
Q Consensus 74 ~~~Ivl~GppGsGKSTlak~La~ 96 (289)
..+|+|+|++||||||+.++|+.
T Consensus 2 ~~kv~ivG~~gvGKStLl~~l~~ 24 (184)
T 2zej_A 2 RMKLMIVGNTGSGKTTLLQQLMK 24 (184)
T ss_dssp -CEEEEESCTTSSHHHHHHHHTC
T ss_pred ceEEEEECCCCCCHHHHHHHHhc
Confidence 36899999999999999999975
No 273
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=96.11 E-value=0.0045 Score=49.98 Aligned_cols=25 Identities=24% Similarity=0.332 Sum_probs=22.2
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHH
Q 022951 73 KHVQWVFLGCPGVGKGTYASRLSNL 97 (289)
Q Consensus 73 ~~~~Ivl~GppGsGKSTlak~La~~ 97 (289)
+..+|+|+|.+|+||||+..+|...
T Consensus 17 ~~~ki~v~G~~~~GKSsl~~~l~~~ 41 (183)
T 3kkq_A 17 PTYKLVVVGDGGVGKSALTIQFFQK 41 (183)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred CceEEEEECCCCCCHHHHHHHHHhC
Confidence 4688999999999999999999754
No 274
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=96.11 E-value=0.0038 Score=55.75 Aligned_cols=33 Identities=21% Similarity=0.121 Sum_probs=28.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhCCCeeehHH
Q 022951 75 VQWVFLGCPGVGKGTYASRLSNLLGVPHIATGD 107 (289)
Q Consensus 75 ~~Ivl~GppGsGKSTlak~La~~lg~~~i~~d~ 107 (289)
..++|.|++|+||||+++.+++..+..+++...
T Consensus 32 ~~v~i~G~~G~GKT~Ll~~~~~~~~~~~~~~~~ 64 (350)
T 2qen_A 32 PLTLLLGIRRVGKSSLLRAFLNERPGILIDCRE 64 (350)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHSSEEEEEHHH
T ss_pred CeEEEECCCcCCHHHHHHHHHHHcCcEEEEeec
Confidence 578999999999999999999988877776543
No 275
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=96.10 E-value=0.0039 Score=50.15 Aligned_cols=27 Identities=19% Similarity=0.245 Sum_probs=22.3
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHHHH
Q 022951 71 EGKHVQWVFLGCPGVGKGTYASRLSNL 97 (289)
Q Consensus 71 ~~~~~~Ivl~GppGsGKSTlak~La~~ 97 (289)
..+..+|+|+|.+|+||||+..+|...
T Consensus 5 ~~~~~ki~v~G~~~~GKssl~~~~~~~ 31 (182)
T 3bwd_D 5 ASRFIKCVTVGDGAVGKTCLLISYTSN 31 (182)
T ss_dssp --CCCEEEEECSTTSSHHHHHHHHHHS
T ss_pred CCceEEEEEECCCCCCHHHHHHHHhcC
Confidence 345688999999999999999998753
No 276
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=96.10 E-value=0.0041 Score=48.86 Aligned_cols=23 Identities=35% Similarity=0.501 Sum_probs=20.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHH
Q 022951 75 VQWVFLGCPGVGKGTYASRLSNL 97 (289)
Q Consensus 75 ~~Ivl~GppGsGKSTlak~La~~ 97 (289)
++|+|+|++|+||||+.++|...
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 57999999999999999999864
No 277
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=96.10 E-value=0.0043 Score=52.02 Aligned_cols=26 Identities=23% Similarity=0.268 Sum_probs=23.1
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHHh
Q 022951 73 KHVQWVFLGCPGVGKGTYASRLSNLL 98 (289)
Q Consensus 73 ~~~~Ivl~GppGsGKSTlak~La~~l 98 (289)
+..+|+|+|.+||||||+..+|+..+
T Consensus 29 ~~~~i~i~G~~g~GKTTl~~~l~~~~ 54 (221)
T 2wsm_A 29 GTVAVNIMGAIGSGKTLLIERTIERI 54 (221)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHh
Confidence 35689999999999999999999875
No 278
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=96.08 E-value=0.0031 Score=54.59 Aligned_cols=26 Identities=23% Similarity=0.263 Sum_probs=22.2
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHHh
Q 022951 73 KHVQWVFLGCPGVGKGTYASRLSNLL 98 (289)
Q Consensus 73 ~~~~Ivl~GppGsGKSTlak~La~~l 98 (289)
+.-++.|+||.||||||+.+.|+..+
T Consensus 30 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 30 EGALVAVVGQVGCGKSSLLSALLAEM 55 (237)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTCS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34578999999999999999998654
No 279
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=96.08 E-value=0.0054 Score=58.09 Aligned_cols=26 Identities=27% Similarity=0.465 Sum_probs=23.7
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHHh
Q 022951 73 KHVQWVFLGCPGVGKGTYASRLSNLL 98 (289)
Q Consensus 73 ~~~~Ivl~GppGsGKSTlak~La~~l 98 (289)
++.+|+|+|++||||||++..||..+
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l 124 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYF 124 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHH
Confidence 57899999999999999999999866
No 280
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=96.07 E-value=0.0042 Score=48.90 Aligned_cols=24 Identities=21% Similarity=0.315 Sum_probs=21.5
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHHH
Q 022951 74 HVQWVFLGCPGVGKGTYASRLSNL 97 (289)
Q Consensus 74 ~~~Ivl~GppGsGKSTlak~La~~ 97 (289)
...|+|+|.+|+||||+..+|...
T Consensus 4 ~~~i~v~G~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 4 LHKVIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHHhC
Confidence 578999999999999999999754
No 281
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=96.07 E-value=0.0046 Score=50.19 Aligned_cols=24 Identities=33% Similarity=0.540 Sum_probs=21.7
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHH
Q 022951 73 KHVQWVFLGCPGVGKGTYASRLSN 96 (289)
Q Consensus 73 ~~~~Ivl~GppGsGKSTlak~La~ 96 (289)
+..+|+|+|++|+||||+.++|..
T Consensus 6 ~~~~i~lvG~~gvGKStL~~~l~~ 29 (188)
T 2wjg_A 6 KSYEIALIGNPNVGKSTIFNALTG 29 (188)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhC
Confidence 457899999999999999999975
No 282
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=96.07 E-value=0.0039 Score=51.55 Aligned_cols=27 Identities=26% Similarity=0.220 Sum_probs=22.7
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHHHH
Q 022951 71 EGKHVQWVFLGCPGVGKGTYASRLSNL 97 (289)
Q Consensus 71 ~~~~~~Ivl~GppGsGKSTlak~La~~ 97 (289)
..+.++|+|+|.+|+||||+..+|...
T Consensus 21 ~~~~~ki~vvG~~~~GKSsli~~l~~~ 47 (201)
T 3oes_A 21 LVRYRKVVILGYRCVGKTSLAHQFVEG 47 (201)
T ss_dssp --CEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred CCCcEEEEEECCCCcCHHHHHHHHHhC
Confidence 345789999999999999999999864
No 283
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=96.06 E-value=0.0046 Score=49.50 Aligned_cols=25 Identities=24% Similarity=0.373 Sum_probs=22.4
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHH
Q 022951 73 KHVQWVFLGCPGVGKGTYASRLSNL 97 (289)
Q Consensus 73 ~~~~Ivl~GppGsGKSTlak~La~~ 97 (289)
+...|+|+|.+|+||||+.++|...
T Consensus 8 ~~~~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 8 ETHKLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHHS
T ss_pred CceEEEEECCCCCCHHHHHHHHHhC
Confidence 4678999999999999999999764
No 284
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=96.06 E-value=0.0041 Score=55.92 Aligned_cols=39 Identities=15% Similarity=0.231 Sum_probs=29.9
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHHHhC----C--CeeehHHHHHHH
Q 022951 74 HVQWVFLGCPGVGKGTYASRLSNLLG----V--PHIATGDLLDEI 112 (289)
Q Consensus 74 ~~~Ivl~GppGsGKSTlak~La~~lg----~--~~i~~d~l~~~~ 112 (289)
...++|.||||+|||+++..|+..+. . .+++..+++..+
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~~~~~~~g~~v~~~~~~~l~~~l 196 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAHELSEKKGVSTTLLHFPSFAIDV 196 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHHHHSCCCEEEEEHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEHHHHHHHH
Confidence 45789999999999999999988553 3 346777776544
No 285
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=96.06 E-value=0.0042 Score=49.53 Aligned_cols=24 Identities=42% Similarity=0.584 Sum_probs=21.3
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHH
Q 022951 73 KHVQWVFLGCPGVGKGTYASRLSN 96 (289)
Q Consensus 73 ~~~~Ivl~GppGsGKSTlak~La~ 96 (289)
+..+|+|+|++|+||||+.++|..
T Consensus 3 ~~~ki~i~G~~~vGKSsl~~~l~~ 26 (175)
T 2nzj_A 3 ALYRVVLLGDPGVGKTSLASLFAG 26 (175)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHC
T ss_pred eEEEEEEECCCCccHHHHHHHHhc
Confidence 457899999999999999999864
No 286
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=96.06 E-value=0.0042 Score=49.21 Aligned_cols=24 Identities=25% Similarity=0.469 Sum_probs=21.3
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHH
Q 022951 73 KHVQWVFLGCPGVGKGTYASRLSN 96 (289)
Q Consensus 73 ~~~~Ivl~GppGsGKSTlak~La~ 96 (289)
..+.|+|+|++|+||||+..+|..
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~ 25 (170)
T 1g16_A 2 SIMKILLIGDSGVGKSCLLVRFVE 25 (170)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHH
T ss_pred CceEEEEECcCCCCHHHHHHHHHh
Confidence 357899999999999999999975
No 287
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=96.05 E-value=0.0036 Score=51.23 Aligned_cols=25 Identities=24% Similarity=0.294 Sum_probs=21.4
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHH
Q 022951 72 GKHVQWVFLGCPGVGKGTYASRLSN 96 (289)
Q Consensus 72 ~~~~~Ivl~GppGsGKSTlak~La~ 96 (289)
....+|+|+|.+|+||||+..+|..
T Consensus 15 ~~~~ki~v~G~~~~GKSsl~~~l~~ 39 (199)
T 4bas_A 15 KTKLQVVMCGLDNSGKTTIINQVKP 39 (199)
T ss_dssp -CEEEEEEECCTTSCHHHHHHHHSC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhc
Confidence 3568999999999999999998854
No 288
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=96.05 E-value=0.0026 Score=54.03 Aligned_cols=24 Identities=25% Similarity=0.105 Sum_probs=20.9
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHHH
Q 022951 74 HVQWVFLGCPGVGKGTYASRLSNL 97 (289)
Q Consensus 74 ~~~Ivl~GppGsGKSTlak~La~~ 97 (289)
.-++.|+||.||||||+.+.|+..
T Consensus 22 Ge~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 22 NTIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp CSEEEEECCTTSSTTHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 346889999999999999999864
No 289
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=96.05 E-value=0.0043 Score=49.75 Aligned_cols=25 Identities=32% Similarity=0.454 Sum_probs=22.1
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHH
Q 022951 73 KHVQWVFLGCPGVGKGTYASRLSNL 97 (289)
Q Consensus 73 ~~~~Ivl~GppGsGKSTlak~La~~ 97 (289)
+...|+|+|++||||||+..+|...
T Consensus 7 ~~~~i~v~G~~~~GKSsli~~l~~~ 31 (182)
T 1ky3_A 7 NILKVIILGDSGVGKTSLMHRYVND 31 (182)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhC
Confidence 4678999999999999999998753
No 290
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=96.05 E-value=0.0036 Score=50.47 Aligned_cols=24 Identities=25% Similarity=0.400 Sum_probs=21.7
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHH
Q 022951 73 KHVQWVFLGCPGVGKGTYASRLSN 96 (289)
Q Consensus 73 ~~~~Ivl~GppGsGKSTlak~La~ 96 (289)
+..+|+|+|.+|+||||+..+|..
T Consensus 5 ~~~ki~~~G~~~~GKSsli~~l~~ 28 (181)
T 3t5g_A 5 KSRKIAILGYRSVGKSSLTIQFVE 28 (181)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHH
T ss_pred ceEEEEEECcCCCCHHHHHHHHHc
Confidence 568899999999999999999974
No 291
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=96.05 E-value=0.0043 Score=59.55 Aligned_cols=27 Identities=26% Similarity=0.402 Sum_probs=24.1
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHHHh
Q 022951 72 GKHVQWVFLGCPGVGKGTYASRLSNLL 98 (289)
Q Consensus 72 ~~~~~Ivl~GppGsGKSTlak~La~~l 98 (289)
.++.+|+|+|++||||||+++.|+..+
T Consensus 291 ~~GeVI~LVGpNGSGKTTLl~~LAgll 317 (503)
T 2yhs_A 291 KAPFVILMVGVNGVGKTTTIGKLARQF 317 (503)
T ss_dssp CTTEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred cCCeEEEEECCCcccHHHHHHHHHHHh
Confidence 356789999999999999999999876
No 292
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=96.04 E-value=0.0043 Score=52.79 Aligned_cols=32 Identities=19% Similarity=0.150 Sum_probs=24.4
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHHHh-----CCCeeeh
Q 022951 74 HVQWVFLGCPGVGKGTYASRLSNLL-----GVPHIAT 105 (289)
Q Consensus 74 ~~~Ivl~GppGsGKSTlak~La~~l-----g~~~i~~ 105 (289)
.-+++|.|+|||||||++..++... ++.+++.
T Consensus 23 G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~~ 59 (247)
T 2dr3_A 23 RNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVAL 59 (247)
T ss_dssp TCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEc
Confidence 4578999999999999998887643 3455554
No 293
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=96.04 E-value=0.0041 Score=49.99 Aligned_cols=25 Identities=28% Similarity=0.400 Sum_probs=22.0
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHH
Q 022951 73 KHVQWVFLGCPGVGKGTYASRLSNL 97 (289)
Q Consensus 73 ~~~~Ivl~GppGsGKSTlak~La~~ 97 (289)
...+|+|+|.+|+||||+..+|...
T Consensus 11 ~~~ki~v~G~~~~GKSsli~~l~~~ 35 (181)
T 2efe_B 11 INAKLVLLGDVGAGKSSLVLRFVKD 35 (181)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHHHC
T ss_pred cceEEEEECcCCCCHHHHHHHHHcC
Confidence 4578999999999999999998753
No 294
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=96.03 E-value=0.0029 Score=56.15 Aligned_cols=25 Identities=32% Similarity=0.421 Sum_probs=21.8
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHHHh
Q 022951 74 HVQWVFLGCPGVGKGTYASRLSNLL 98 (289)
Q Consensus 74 ~~~Ivl~GppGsGKSTlak~La~~l 98 (289)
.-++.|+||.||||||+.+.|+..+
T Consensus 34 Ge~~~iiGpnGsGKSTLl~~l~Gl~ 58 (275)
T 3gfo_A 34 GEVTAILGGNGVGKSTLFQNFNGIL 58 (275)
T ss_dssp TSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHHcCC
Confidence 4578999999999999999998654
No 295
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=96.03 E-value=0.0029 Score=55.78 Aligned_cols=25 Identities=28% Similarity=0.339 Sum_probs=21.7
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHHHh
Q 022951 74 HVQWVFLGCPGVGKGTYASRLSNLL 98 (289)
Q Consensus 74 ~~~Ivl~GppGsGKSTlak~La~~l 98 (289)
.-++.|+||.||||||+.+.|+..+
T Consensus 37 Ge~~~liG~nGsGKSTLl~~l~Gl~ 61 (266)
T 4g1u_C 37 GEMVAIIGPNGAGKSTLLRLLTGYL 61 (266)
T ss_dssp TCEEEEECCTTSCHHHHHHHHTSSS
T ss_pred CCEEEEECCCCCcHHHHHHHHhcCC
Confidence 4578999999999999999998654
No 296
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=96.02 E-value=0.005 Score=51.80 Aligned_cols=26 Identities=31% Similarity=0.457 Sum_probs=23.0
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHHh
Q 022951 73 KHVQWVFLGCPGVGKGTYASRLSNLL 98 (289)
Q Consensus 73 ~~~~Ivl~GppGsGKSTlak~La~~l 98 (289)
+..+|+|+|.+||||||+..+|+..+
T Consensus 37 ~~~~i~ivG~~gvGKTtl~~~l~~~~ 62 (226)
T 2hf9_A 37 GVVAFDFMGAIGSGKTLLIEKLIDNL 62 (226)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHh
Confidence 35789999999999999999998875
No 297
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=96.02 E-value=0.0052 Score=48.81 Aligned_cols=24 Identities=33% Similarity=0.506 Sum_probs=21.7
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHH
Q 022951 73 KHVQWVFLGCPGVGKGTYASRLSN 96 (289)
Q Consensus 73 ~~~~Ivl~GppGsGKSTlak~La~ 96 (289)
+.++|+|+|.+|+||||+..+|..
T Consensus 6 ~~~~i~v~G~~~~GKssl~~~l~~ 29 (171)
T 1upt_A 6 REMRILILGLDGAGKTTILYRLQV 29 (171)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CccEEEEECCCCCCHHHHHHHHhc
Confidence 468899999999999999999965
No 298
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=96.02 E-value=0.005 Score=56.37 Aligned_cols=27 Identities=37% Similarity=0.466 Sum_probs=23.9
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHHHh
Q 022951 72 GKHVQWVFLGCPGVGKGTYASRLSNLL 98 (289)
Q Consensus 72 ~~~~~Ivl~GppGsGKSTlak~La~~l 98 (289)
.+..+|+|+|+||+||||++..|+..+
T Consensus 77 ~~~~~I~i~G~~G~GKSTl~~~L~~~l 103 (355)
T 3p32_A 77 GNAHRVGITGVPGVGKSTAIEALGMHL 103 (355)
T ss_dssp CCSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHH
Confidence 356789999999999999999998876
No 299
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=96.02 E-value=0.0051 Score=49.39 Aligned_cols=26 Identities=23% Similarity=0.340 Sum_probs=22.8
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHHH
Q 022951 72 GKHVQWVFLGCPGVGKGTYASRLSNL 97 (289)
Q Consensus 72 ~~~~~Ivl~GppGsGKSTlak~La~~ 97 (289)
.+..+|+|+|.+|+||||+..+|...
T Consensus 8 ~~~~~i~v~G~~~~GKssli~~l~~~ 33 (180)
T 2g6b_A 8 DVAFKVMLVGDSGVGKTCLLVRFKDG 33 (180)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred CcceEEEEECcCCCCHHHHHHHHHhC
Confidence 45689999999999999999999754
No 300
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=96.00 E-value=0.0048 Score=48.73 Aligned_cols=23 Identities=30% Similarity=0.527 Sum_probs=21.0
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHH
Q 022951 74 HVQWVFLGCPGVGKGTYASRLSN 96 (289)
Q Consensus 74 ~~~Ivl~GppGsGKSTlak~La~ 96 (289)
...|+|+|.+|+||||+.++|..
T Consensus 3 ~~ki~v~G~~~~GKssli~~l~~ 25 (167)
T 1c1y_A 3 EYKLVVLGSGGVGKSALTVQFVQ 25 (167)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH
T ss_pred eeEEEEECCCCCCHHHHHHHHHc
Confidence 46899999999999999999975
No 301
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=96.00 E-value=0.0044 Score=49.09 Aligned_cols=24 Identities=25% Similarity=0.458 Sum_probs=21.3
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHH
Q 022951 73 KHVQWVFLGCPGVGKGTYASRLSN 96 (289)
Q Consensus 73 ~~~~Ivl~GppGsGKSTlak~La~ 96 (289)
+..+|+|+|.+|+||||+..+|..
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~ 25 (172)
T 2erx_A 2 NDYRVAVFGAGGVGKSSLVLRFVK 25 (172)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHT
T ss_pred CceEEEEECCCCCCHHHHHHHHHc
Confidence 357899999999999999999975
No 302
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=96.00 E-value=0.0048 Score=57.07 Aligned_cols=26 Identities=23% Similarity=0.282 Sum_probs=23.0
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHHh
Q 022951 73 KHVQWVFLGCPGVGKGTYASRLSNLL 98 (289)
Q Consensus 73 ~~~~Ivl~GppGsGKSTlak~La~~l 98 (289)
+.-+++|+||+||||||+.+.|+..+
T Consensus 135 ~g~~i~ivG~~GsGKTTll~~l~~~~ 160 (372)
T 2ewv_A 135 KMGLILVTGPTGSGKSTTIASMIDYI 160 (372)
T ss_dssp SSEEEEEECSSSSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 45689999999999999999998865
No 303
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=95.99 E-value=0.0043 Score=49.86 Aligned_cols=25 Identities=20% Similarity=0.219 Sum_probs=22.4
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHH
Q 022951 73 KHVQWVFLGCPGVGKGTYASRLSNL 97 (289)
Q Consensus 73 ~~~~Ivl~GppGsGKSTlak~La~~ 97 (289)
+..+|+|+|.+|+||||+..+|...
T Consensus 6 ~~~ki~~vG~~~vGKTsli~~l~~~ 30 (178)
T 2iwr_A 6 PELRLGVLGDARSGKSSLIHRFLTG 30 (178)
T ss_dssp CEEEEEEECCGGGCHHHHHHHHHHS
T ss_pred CceEEEEECCCCCCHHHHHHHHHhC
Confidence 5688999999999999999999763
No 304
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=95.99 E-value=0.0038 Score=54.16 Aligned_cols=26 Identities=31% Similarity=0.324 Sum_probs=22.3
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHHh
Q 022951 73 KHVQWVFLGCPGVGKGTYASRLSNLL 98 (289)
Q Consensus 73 ~~~~Ivl~GppGsGKSTlak~La~~l 98 (289)
..-++.|+||.||||||+.+.|+..+
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (243)
T 1mv5_A 27 PNSIIAFAGPSGGGKSTIFSLLERFY 52 (243)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 44578999999999999999998654
No 305
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=95.99 E-value=0.0039 Score=55.07 Aligned_cols=22 Identities=41% Similarity=0.554 Sum_probs=21.0
Q ss_pred EEEEcCCCCCHHHHHHHHHHHh
Q 022951 77 WVFLGCPGVGKGTYASRLSNLL 98 (289)
Q Consensus 77 Ivl~GppGsGKSTlak~La~~l 98 (289)
++|.||||+||||+++.+++.+
T Consensus 41 ~ll~G~~G~GKt~la~~l~~~l 62 (319)
T 2chq_A 41 LLFSGPPGTGKTATAIALARDL 62 (319)
T ss_dssp EEEESSSSSSHHHHHHHHHHHH
T ss_pred EEEECcCCcCHHHHHHHHHHHh
Confidence 8999999999999999999986
No 306
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=95.99 E-value=0.0053 Score=49.16 Aligned_cols=25 Identities=20% Similarity=0.339 Sum_probs=22.1
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHH
Q 022951 73 KHVQWVFLGCPGVGKGTYASRLSNL 97 (289)
Q Consensus 73 ~~~~Ivl~GppGsGKSTlak~La~~ 97 (289)
+..+|+|+|.+|+||||+..+|...
T Consensus 5 ~~~ki~v~G~~~~GKssl~~~l~~~ 29 (178)
T 2hxs_A 5 RQLKIVVLGDGASGKTSLTTCFAQE 29 (178)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHGG
T ss_pred ceEEEEEECcCCCCHHHHHHHHHhC
Confidence 4688999999999999999998753
No 307
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=95.98 E-value=0.0036 Score=55.05 Aligned_cols=26 Identities=23% Similarity=0.303 Sum_probs=22.0
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHHh
Q 022951 73 KHVQWVFLGCPGVGKGTYASRLSNLL 98 (289)
Q Consensus 73 ~~~~Ivl~GppGsGKSTlak~La~~l 98 (289)
..-++.|+||.||||||+.+.|+..+
T Consensus 31 ~Ge~~~liG~nGsGKSTLlk~l~Gl~ 56 (262)
T 1b0u_A 31 AGDVISIIGSSGSGKSTFLRCINFLE 56 (262)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34578999999999999999998654
No 308
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=95.98 E-value=0.0045 Score=49.58 Aligned_cols=25 Identities=28% Similarity=0.417 Sum_probs=22.0
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHH
Q 022951 73 KHVQWVFLGCPGVGKGTYASRLSNL 97 (289)
Q Consensus 73 ~~~~Ivl~GppGsGKSTlak~La~~ 97 (289)
....|+|+|++|+||||+..+|...
T Consensus 6 ~~~~i~v~G~~~~GKSsli~~l~~~ 30 (177)
T 1wms_A 6 SLFKVILLGDGGVGKSSLMNRYVTN 30 (177)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcC
Confidence 4578999999999999999999753
No 309
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=95.98 E-value=0.005 Score=50.62 Aligned_cols=27 Identities=26% Similarity=0.452 Sum_probs=22.5
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHHHH
Q 022951 71 EGKHVQWVFLGCPGVGKGTYASRLSNL 97 (289)
Q Consensus 71 ~~~~~~Ivl~GppGsGKSTlak~La~~ 97 (289)
..+..+|+|+|.+|+||||+..+|...
T Consensus 25 ~~~~~ki~v~G~~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 25 KSAEVKLAIFGRAGVGKSALVVRFLTK 51 (196)
T ss_dssp --CCEEEEEECCTTSSHHHHHHHHHHS
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHhC
Confidence 345689999999999999999999764
No 310
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=95.98 E-value=0.0056 Score=49.71 Aligned_cols=26 Identities=27% Similarity=0.307 Sum_probs=22.4
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHHH
Q 022951 72 GKHVQWVFLGCPGVGKGTYASRLSNL 97 (289)
Q Consensus 72 ~~~~~Ivl~GppGsGKSTlak~La~~ 97 (289)
...++|+|+|.+|+||||+..+|...
T Consensus 21 ~~~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 3pqc_A 21 PLKGEVAFVGRSNVGKSSLLNALFNR 46 (195)
T ss_dssp CTTCEEEEEEBTTSSHHHHHHHHHTS
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHcC
Confidence 35678999999999999999998754
No 311
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=95.98 E-value=0.005 Score=50.26 Aligned_cols=25 Identities=16% Similarity=0.157 Sum_probs=22.4
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHH
Q 022951 73 KHVQWVFLGCPGVGKGTYASRLSNL 97 (289)
Q Consensus 73 ~~~~Ivl~GppGsGKSTlak~La~~ 97 (289)
+.+.|+|+|++||||||+...|...
T Consensus 47 ~~~~i~vvG~~g~GKSsll~~l~~~ 71 (193)
T 2ged_A 47 YQPSIIIAGPQNSGKTSLLTLLTTD 71 (193)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 4578999999999999999999864
No 312
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=95.98 E-value=0.0039 Score=54.33 Aligned_cols=24 Identities=25% Similarity=0.293 Sum_probs=21.2
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHHH
Q 022951 74 HVQWVFLGCPGVGKGTYASRLSNL 97 (289)
Q Consensus 74 ~~~Ivl~GppGsGKSTlak~La~~ 97 (289)
.-++.|.||.||||||+.+.|+..
T Consensus 29 Ge~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 29 GEVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHTC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 457899999999999999999864
No 313
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=95.97 E-value=0.0046 Score=49.98 Aligned_cols=25 Identities=28% Similarity=0.440 Sum_probs=22.2
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHH
Q 022951 73 KHVQWVFLGCPGVGKGTYASRLSNL 97 (289)
Q Consensus 73 ~~~~Ivl~GppGsGKSTlak~La~~ 97 (289)
+.++|+|+|++|+||||+..+|...
T Consensus 3 ~~~ki~v~G~~~~GKSsli~~l~~~ 27 (189)
T 4dsu_A 3 TEYKLVVVGADGVGKSALTIQLIQN 27 (189)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred cEEEEEEECCCCCCHHHHHHHHHhC
Confidence 4678999999999999999999753
No 314
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=95.97 E-value=0.0046 Score=54.62 Aligned_cols=24 Identities=25% Similarity=0.380 Sum_probs=21.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHh
Q 022951 75 VQWVFLGCPGVGKGTYASRLSNLL 98 (289)
Q Consensus 75 ~~Ivl~GppGsGKSTlak~La~~l 98 (289)
..+.|+|++||||||+.+.|+..+
T Consensus 3 f~v~lvG~nGaGKSTLln~L~g~~ 26 (270)
T 3sop_A 3 FNIMVVGQSGLGKSTLVNTLFKSQ 26 (270)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHhCCC
Confidence 568899999999999999999865
No 315
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=95.97 E-value=0.0045 Score=48.93 Aligned_cols=24 Identities=29% Similarity=0.466 Sum_probs=21.1
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHHH
Q 022951 74 HVQWVFLGCPGVGKGTYASRLSNL 97 (289)
Q Consensus 74 ~~~Ivl~GppGsGKSTlak~La~~ 97 (289)
...|+|+|++|+||||+..+|...
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1ek0_A 3 SIKLVLLGEAAVGKSSIVLRFVSN 26 (170)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHhcC
Confidence 468999999999999999998753
No 316
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=95.97 E-value=0.0021 Score=65.42 Aligned_cols=32 Identities=28% Similarity=0.379 Sum_probs=26.8
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhCCCeee
Q 022951 73 KHVQWVFLGCPGVGKGTYASRLSNLLGVPHIA 104 (289)
Q Consensus 73 ~~~~Ivl~GppGsGKSTlak~La~~lg~~~i~ 104 (289)
.+..++|.||||+||||+|+.|+..++..++.
T Consensus 510 ~~~~vLL~GppGtGKT~Lakala~~~~~~~i~ 541 (806)
T 1ypw_A 510 PSKGVLFYGPPGCGKTLLAKAIANECQANFIS 541 (806)
T ss_dssp CCCCCCCBCCTTSSHHHHHHHHHHHHTCCCCC
T ss_pred CCceeEEECCCCCCHHHHHHHHHHHhCCCEEE
Confidence 34568899999999999999999998765544
No 317
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=95.97 E-value=0.0047 Score=49.00 Aligned_cols=25 Identities=28% Similarity=0.274 Sum_probs=22.2
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHH
Q 022951 73 KHVQWVFLGCPGVGKGTYASRLSNL 97 (289)
Q Consensus 73 ~~~~Ivl~GppGsGKSTlak~La~~ 97 (289)
...+|+|+|.+|+||||+.++|...
T Consensus 5 ~~~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 5 YSFKVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHHHC
T ss_pred cceEEEEECcCCCCHHHHHHHHHcC
Confidence 4678999999999999999999754
No 318
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=95.96 E-value=0.0034 Score=54.73 Aligned_cols=25 Identities=20% Similarity=0.266 Sum_probs=21.6
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHHHh
Q 022951 74 HVQWVFLGCPGVGKGTYASRLSNLL 98 (289)
Q Consensus 74 ~~~Ivl~GppGsGKSTlak~La~~l 98 (289)
.-++.|+||.||||||+.+.|+..+
T Consensus 35 Ge~~~i~G~nGsGKSTLl~~l~Gl~ 59 (247)
T 2ff7_A 35 GEVIGIVGRSGSGKSTLTKLIQRFY 59 (247)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 4578999999999999999997654
No 319
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=95.96 E-value=0.0053 Score=54.24 Aligned_cols=27 Identities=15% Similarity=0.191 Sum_probs=23.1
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHHHhCC
Q 022951 74 HVQWVFLGCPGVGKGTYASRLSNLLGV 100 (289)
Q Consensus 74 ~~~Ivl~GppGsGKSTlak~La~~lg~ 100 (289)
.-.|+|.||||+|||++|..|+..+++
T Consensus 104 ~n~~~l~GppgtGKt~~a~ala~~~~l 130 (267)
T 1u0j_A 104 RNTIWLFGPATTGKTNIAEAIAHTVPF 130 (267)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHSSC
T ss_pred CcEEEEECCCCCCHHHHHHHHHhhhcc
Confidence 346999999999999999999987543
No 320
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=95.96 E-value=0.0054 Score=61.70 Aligned_cols=29 Identities=34% Similarity=0.578 Sum_probs=25.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhCCCee
Q 022951 75 VQWVFLGCPGVGKGTYASRLSNLLGVPHI 103 (289)
Q Consensus 75 ~~Ivl~GppGsGKSTlak~La~~lg~~~i 103 (289)
..++|+||||+|||++|+.|++.++..++
T Consensus 489 ~~~ll~G~~GtGKT~la~~la~~l~~~~~ 517 (758)
T 1r6b_X 489 GSFLFAGPTGVGKTEVTVQLSKALGIELL 517 (758)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHTCEEE
T ss_pred eEEEEECCCCCcHHHHHHHHHHHhcCCEE
Confidence 36899999999999999999999986554
No 321
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=95.96 E-value=0.0034 Score=54.39 Aligned_cols=25 Identities=28% Similarity=0.403 Sum_probs=21.5
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHHHh
Q 022951 74 HVQWVFLGCPGVGKGTYASRLSNLL 98 (289)
Q Consensus 74 ~~~Ivl~GppGsGKSTlak~La~~l 98 (289)
.-++.|.||.||||||+.+.|+..+
T Consensus 32 Ge~~~l~G~nGsGKSTLl~~l~Gl~ 56 (240)
T 1ji0_A 32 GQIVTLIGANGAGKTTTLSAIAGLV 56 (240)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4578999999999999999997644
No 322
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=95.95 E-value=0.0053 Score=55.96 Aligned_cols=26 Identities=38% Similarity=0.612 Sum_probs=23.1
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHHh
Q 022951 73 KHVQWVFLGCPGVGKGTYASRLSNLL 98 (289)
Q Consensus 73 ~~~~Ivl~GppGsGKSTlak~La~~l 98 (289)
+..++.|+|+|||||||+.+.|+..+
T Consensus 54 ~g~~v~i~G~~GaGKSTLl~~l~g~~ 79 (337)
T 2qm8_A 54 RAIRVGITGVPGVGKSTTIDALGSLL 79 (337)
T ss_dssp CSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhh
Confidence 45789999999999999999998754
No 323
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=95.94 E-value=0.0035 Score=54.91 Aligned_cols=26 Identities=27% Similarity=0.376 Sum_probs=22.0
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHHh
Q 022951 73 KHVQWVFLGCPGVGKGTYASRLSNLL 98 (289)
Q Consensus 73 ~~~~Ivl~GppGsGKSTlak~La~~l 98 (289)
..-++.|+||.||||||+.+.|+..+
T Consensus 32 ~Ge~~~liG~nGsGKSTLlk~l~Gl~ 57 (257)
T 1g6h_A 32 KGDVTLIIGPNGSGKSTLINVITGFL 57 (257)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34578999999999999999997654
No 324
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=95.92 E-value=0.004 Score=57.43 Aligned_cols=25 Identities=24% Similarity=0.327 Sum_probs=21.9
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHHHh
Q 022951 74 HVQWVFLGCPGVGKGTYASRLSNLL 98 (289)
Q Consensus 74 ~~~Ivl~GppGsGKSTlak~La~~l 98 (289)
.-++.|+||+||||||+.+.|+..+
T Consensus 30 Ge~~~llGpsGsGKSTLLr~iaGl~ 54 (359)
T 3fvq_A 30 GEILFIIGASGCGKTTLLRCLAGFE 54 (359)
T ss_dssp TCEEEEEESTTSSHHHHHHHHHTSS
T ss_pred CCEEEEECCCCchHHHHHHHHhcCC
Confidence 4578999999999999999998754
No 325
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=95.92 E-value=0.0055 Score=50.00 Aligned_cols=25 Identities=28% Similarity=0.453 Sum_probs=22.1
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHH
Q 022951 72 GKHVQWVFLGCPGVGKGTYASRLSN 96 (289)
Q Consensus 72 ~~~~~Ivl~GppGsGKSTlak~La~ 96 (289)
.+...|+|+|++|+||||+..+|..
T Consensus 21 ~~~~~i~v~G~~~~GKSsli~~l~~ 45 (195)
T 1svi_A 21 GGLPEIALAGRSNVGKSSFINSLIN 45 (195)
T ss_dssp SCCCEEEEEEBTTSSHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhC
Confidence 4568899999999999999999964
No 326
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=95.91 E-value=0.0057 Score=56.29 Aligned_cols=25 Identities=24% Similarity=0.267 Sum_probs=22.1
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHHHh
Q 022951 74 HVQWVFLGCPGVGKGTYASRLSNLL 98 (289)
Q Consensus 74 ~~~Ivl~GppGsGKSTlak~La~~l 98 (289)
.-+++|+||+||||||+.+.|+..+
T Consensus 123 ~g~i~I~GptGSGKTTlL~~l~g~~ 147 (356)
T 3jvv_A 123 RGLVLVTGPTGSGKSTTLAAMLDYL 147 (356)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcc
Confidence 3489999999999999999998765
No 327
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=95.90 E-value=0.0051 Score=49.79 Aligned_cols=25 Identities=24% Similarity=0.395 Sum_probs=21.6
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHH
Q 022951 73 KHVQWVFLGCPGVGKGTYASRLSNL 97 (289)
Q Consensus 73 ~~~~Ivl~GppGsGKSTlak~La~~ 97 (289)
+..+|+|+|++|+||||+.++|...
T Consensus 3 ~~~ki~ivG~~g~GKStLl~~l~~~ 27 (172)
T 2gj8_A 3 HGMKVVIAGRPNAGKSSLLNALAGR 27 (172)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHHTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3578999999999999999999754
No 328
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=95.90 E-value=0.0048 Score=48.85 Aligned_cols=22 Identities=36% Similarity=0.626 Sum_probs=19.8
Q ss_pred ceEEEEEcCCCCCHHHHHHHHH
Q 022951 74 HVQWVFLGCPGVGKGTYASRLS 95 (289)
Q Consensus 74 ~~~Ivl~GppGsGKSTlak~La 95 (289)
.++|+|+|.+|+||||+.++|.
T Consensus 2 ~~ki~~vG~~~~GKSsli~~l~ 23 (166)
T 3q72_A 2 VYKVLLLGAPGVGKSALARIFG 23 (166)
T ss_dssp CCEEEEEESTTSSHHHHHHHHC
T ss_pred eEEEEEECCCCCCHHHHHHHHc
Confidence 3689999999999999999885
No 329
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=95.90 E-value=0.0054 Score=49.65 Aligned_cols=24 Identities=25% Similarity=0.455 Sum_probs=21.9
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHH
Q 022951 73 KHVQWVFLGCPGVGKGTYASRLSN 96 (289)
Q Consensus 73 ~~~~Ivl~GppGsGKSTlak~La~ 96 (289)
...+|+|+|.+|+||||+..+|..
T Consensus 10 ~~~ki~v~G~~~~GKSsli~~l~~ 33 (195)
T 3bc1_A 10 YLIKFLALGDSGVGKTSVLYQYTD 33 (195)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHH
T ss_pred eeEEEEEECCCCCCHHHHHHHHhc
Confidence 468899999999999999999976
No 330
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=95.90 E-value=0.005 Score=48.74 Aligned_cols=25 Identities=28% Similarity=0.440 Sum_probs=22.0
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHH
Q 022951 73 KHVQWVFLGCPGVGKGTYASRLSNL 97 (289)
Q Consensus 73 ~~~~Ivl~GppGsGKSTlak~La~~ 97 (289)
+...|+|+|++|+||||+.++|...
T Consensus 5 ~~~~i~v~G~~~~GKSsli~~l~~~ 29 (170)
T 1z0j_A 5 RELKVCLLGDTGVGKSSIMWRFVED 29 (170)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred cceEEEEECcCCCCHHHHHHHHHcC
Confidence 4578999999999999999999764
No 331
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=95.89 E-value=0.0042 Score=54.75 Aligned_cols=26 Identities=31% Similarity=0.346 Sum_probs=22.1
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHHh
Q 022951 73 KHVQWVFLGCPGVGKGTYASRLSNLL 98 (289)
Q Consensus 73 ~~~~Ivl~GppGsGKSTlak~La~~l 98 (289)
..-++.|+||.||||||+.+.|+..+
T Consensus 49 ~Gei~~liG~NGsGKSTLlk~l~Gl~ 74 (263)
T 2olj_A 49 EGEVVVVIGPSGSGKSTFLRCLNLLE 74 (263)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEEcCCCCcHHHHHHHHHcCC
Confidence 34578999999999999999998654
No 332
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=95.89 E-value=0.0052 Score=49.99 Aligned_cols=25 Identities=28% Similarity=0.428 Sum_probs=22.1
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHH
Q 022951 73 KHVQWVFLGCPGVGKGTYASRLSNL 97 (289)
Q Consensus 73 ~~~~Ivl~GppGsGKSTlak~La~~ 97 (289)
+.++|+|+|.+|+||||+...|...
T Consensus 20 ~~~ki~vvG~~~~GKSsli~~l~~~ 44 (190)
T 3con_A 20 TEYKLVVVGAGGVGKSALTIQLIQN 44 (190)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceeEEEEECcCCCCHHHHHHHHHcC
Confidence 3578999999999999999999864
No 333
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=95.88 E-value=0.0038 Score=53.68 Aligned_cols=25 Identities=20% Similarity=0.218 Sum_probs=21.9
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHHHh
Q 022951 74 HVQWVFLGCPGVGKGTYASRLSNLL 98 (289)
Q Consensus 74 ~~~Ivl~GppGsGKSTlak~La~~l 98 (289)
.-++.|+||.||||||+.+.|+..+
T Consensus 34 Ge~~~i~G~nGsGKSTLl~~l~Gl~ 58 (229)
T 2pze_A 34 GQLLAVAGSTGAGKTSLLMMIMGEL 58 (229)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4578999999999999999998754
No 334
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=95.88 E-value=0.0042 Score=54.88 Aligned_cols=26 Identities=35% Similarity=0.364 Sum_probs=22.3
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHHh
Q 022951 73 KHVQWVFLGCPGVGKGTYASRLSNLL 98 (289)
Q Consensus 73 ~~~~Ivl~GppGsGKSTlak~La~~l 98 (289)
+.-+++|+||.||||||+.+.|+..+
T Consensus 44 ~Ge~~~i~G~nGsGKSTLlk~l~Gl~ 69 (271)
T 2ixe_A 44 PGKVTALVGPNGSGKSTVAALLQNLY 69 (271)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34578999999999999999998654
No 335
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=95.87 E-value=0.0043 Score=54.46 Aligned_cols=26 Identities=27% Similarity=0.377 Sum_probs=22.2
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHHh
Q 022951 73 KHVQWVFLGCPGVGKGTYASRLSNLL 98 (289)
Q Consensus 73 ~~~~Ivl~GppGsGKSTlak~La~~l 98 (289)
+.-++.|+||.||||||+.+.|+..+
T Consensus 45 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 70 (260)
T 2ghi_A 45 SGTTCALVGHTGSGKSTIAKLLYRFY 70 (260)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccC
Confidence 34578999999999999999998654
No 336
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=95.87 E-value=0.0034 Score=53.63 Aligned_cols=25 Identities=32% Similarity=0.360 Sum_probs=21.2
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHHHh
Q 022951 74 HVQWVFLGCPGVGKGTYASRLSNLL 98 (289)
Q Consensus 74 ~~~Ivl~GppGsGKSTlak~La~~l 98 (289)
.-++.|.||.||||||+.+.|+..+
T Consensus 35 Ge~~~iiG~NGsGKSTLlk~l~Gl~ 59 (214)
T 1sgw_A 35 GNVVNFHGPNGIGKTTLLKTISTYL 59 (214)
T ss_dssp TCCEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3468899999999999999997544
No 337
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=95.86 E-value=0.0077 Score=55.12 Aligned_cols=26 Identities=27% Similarity=0.461 Sum_probs=23.1
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHHh
Q 022951 73 KHVQWVFLGCPGVGKGTYASRLSNLL 98 (289)
Q Consensus 73 ~~~~Ivl~GppGsGKSTlak~La~~l 98 (289)
...+|.|+|+|||||||+.+.|...+
T Consensus 73 ~~~~v~lvG~pgaGKSTLln~L~~~~ 98 (349)
T 2www_A 73 LAFRVGLSGPPGAGKSTFIEYFGKML 98 (349)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHh
Confidence 46789999999999999999998754
No 338
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=95.86 E-value=0.0058 Score=50.40 Aligned_cols=27 Identities=30% Similarity=0.406 Sum_probs=21.8
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHHHH
Q 022951 71 EGKHVQWVFLGCPGVGKGTYASRLSNL 97 (289)
Q Consensus 71 ~~~~~~Ivl~GppGsGKSTlak~La~~ 97 (289)
..+..+|+|+|.+|+||||+..+|...
T Consensus 25 ~~~~~ki~v~G~~~~GKSsli~~l~~~ 51 (199)
T 2p5s_A 25 SQKAYKIVLAGDAAVGKSSFLMRLCKN 51 (199)
T ss_dssp ---CEEEEEESSTTSSHHHHHHHHHHC
T ss_pred cCCCeEEEEECcCCCCHHHHHHHHHhC
Confidence 345689999999999999999999753
No 339
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=95.86 E-value=0.0052 Score=54.14 Aligned_cols=25 Identities=24% Similarity=0.320 Sum_probs=21.6
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHH
Q 022951 73 KHVQWVFLGCPGVGKGTYASRLSNL 97 (289)
Q Consensus 73 ~~~~Ivl~GppGsGKSTlak~La~~ 97 (289)
+.-++.|+||.||||||+.+.|+..
T Consensus 45 ~Ge~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 45 PGEVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3457899999999999999999864
No 340
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=95.84 E-value=0.0054 Score=53.93 Aligned_cols=25 Identities=20% Similarity=0.183 Sum_probs=21.6
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHH
Q 022951 73 KHVQWVFLGCPGVGKGTYASRLSNL 97 (289)
Q Consensus 73 ~~~~Ivl~GppGsGKSTlak~La~~ 97 (289)
+.-+++|.|++||||||++..|+..
T Consensus 29 ~G~i~~i~G~~GsGKTtl~~~l~~~ 53 (279)
T 1nlf_A 29 AGTVGALVSPGGAGKSMLALQLAAQ 53 (279)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHH
Confidence 3467899999999999999999864
No 341
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=95.84 E-value=0.0058 Score=49.69 Aligned_cols=26 Identities=15% Similarity=0.167 Sum_probs=22.3
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHHH
Q 022951 72 GKHVQWVFLGCPGVGKGTYASRLSNL 97 (289)
Q Consensus 72 ~~~~~Ivl~GppGsGKSTlak~La~~ 97 (289)
....+|+|+|++|+||||+.++|...
T Consensus 5 ~~~~ki~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 5 NVKCKIVVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp -CEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred ceEEEEEEECCCCCCHHHHHHHHhcC
Confidence 34688999999999999999999764
No 342
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=95.84 E-value=0.0066 Score=49.90 Aligned_cols=25 Identities=20% Similarity=0.298 Sum_probs=22.1
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHH
Q 022951 73 KHVQWVFLGCPGVGKGTYASRLSNL 97 (289)
Q Consensus 73 ~~~~Ivl~GppGsGKSTlak~La~~ 97 (289)
+.+.|+|+|.+|+||||+..+|...
T Consensus 13 ~~~ki~v~G~~~~GKSsli~~l~~~ 37 (206)
T 2bov_A 13 ALHKVIMVGSGGVGKSALTLQFMYD 37 (206)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhC
Confidence 4678999999999999999998754
No 343
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=95.83 E-value=0.0056 Score=48.38 Aligned_cols=24 Identities=29% Similarity=0.457 Sum_probs=21.6
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHH
Q 022951 73 KHVQWVFLGCPGVGKGTYASRLSN 96 (289)
Q Consensus 73 ~~~~Ivl~GppGsGKSTlak~La~ 96 (289)
+...|+|+|.+|+||||+..+|..
T Consensus 5 ~~~~i~v~G~~~~GKssli~~l~~ 28 (170)
T 1r2q_A 5 CQFKLVLLGESAVGKSSLVLRFVK 28 (170)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEEEECCCCCCHHHHHHHHHc
Confidence 457899999999999999999975
No 344
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=95.83 E-value=0.0059 Score=48.45 Aligned_cols=23 Identities=30% Similarity=0.501 Sum_probs=20.3
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHH
Q 022951 74 HVQWVFLGCPGVGKGTYASRLSN 96 (289)
Q Consensus 74 ~~~Ivl~GppGsGKSTlak~La~ 96 (289)
.++|+|+|++|+||||+..+|..
T Consensus 2 ~~ki~ivG~~~~GKSsli~~l~~ 24 (169)
T 3q85_A 2 VFKVMLVGESGVGKSTLAGTFGG 24 (169)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHC
T ss_pred cEEEEEECCCCCCHHHHHHHHHh
Confidence 36799999999999999999863
No 345
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=95.83 E-value=0.0067 Score=52.14 Aligned_cols=26 Identities=19% Similarity=-0.119 Sum_probs=22.8
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHHh
Q 022951 73 KHVQWVFLGCPGVGKGTYASRLSNLL 98 (289)
Q Consensus 73 ~~~~Ivl~GppGsGKSTlak~La~~l 98 (289)
+..+++++|+||+||||.+-.++..+
T Consensus 11 ~G~i~litG~mGsGKTT~ll~~~~r~ 36 (223)
T 2b8t_A 11 IGWIEFITGPMFAGKTAELIRRLHRL 36 (223)
T ss_dssp CCEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CcEEEEEECCCCCcHHHHHHHHHHHH
Confidence 45789999999999999998888776
No 346
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=95.82 E-value=0.0067 Score=54.96 Aligned_cols=27 Identities=22% Similarity=0.470 Sum_probs=23.7
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHHHh
Q 022951 72 GKHVQWVFLGCPGVGKGTYASRLSNLL 98 (289)
Q Consensus 72 ~~~~~Ivl~GppGsGKSTlak~La~~l 98 (289)
.++.+|+|+|++|+||||++..||..+
T Consensus 103 ~~~~vI~ivG~~G~GKTT~~~~LA~~l 129 (320)
T 1zu4_A 103 NRLNIFMLVGVNGTGKTTSLAKMANYY 129 (320)
T ss_dssp TSCEEEEEESSTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 356789999999999999999998876
No 347
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=95.82 E-value=0.0058 Score=50.99 Aligned_cols=24 Identities=33% Similarity=0.540 Sum_probs=21.6
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHH
Q 022951 73 KHVQWVFLGCPGVGKGTYASRLSN 96 (289)
Q Consensus 73 ~~~~Ivl~GppGsGKSTlak~La~ 96 (289)
+.++|+|+|.+|+||||+..+|..
T Consensus 24 ~~~ki~vvG~~~~GKSsLi~~l~~ 47 (217)
T 2f7s_A 24 YLIKLLALGDSGVGKTTFLYRYTD 47 (217)
T ss_dssp EEEEEEEESCTTSSHHHHHHHHHC
T ss_pred eeEEEEEECcCCCCHHHHHHHHhc
Confidence 468899999999999999999875
No 348
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=95.81 E-value=0.0042 Score=54.22 Aligned_cols=25 Identities=24% Similarity=0.379 Sum_probs=21.5
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHHHh
Q 022951 74 HVQWVFLGCPGVGKGTYASRLSNLL 98 (289)
Q Consensus 74 ~~~Ivl~GppGsGKSTlak~La~~l 98 (289)
.-++.|.||.||||||+.+.|+..+
T Consensus 26 Ge~~~liG~NGsGKSTLlk~l~Gl~ 50 (249)
T 2qi9_C 26 GEILHLVGPNGAGKSTLLARMAGMT 50 (249)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCC
Confidence 3478999999999999999997644
No 349
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=95.81 E-value=0.0042 Score=55.20 Aligned_cols=26 Identities=31% Similarity=0.525 Sum_probs=22.2
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHHh
Q 022951 73 KHVQWVFLGCPGVGKGTYASRLSNLL 98 (289)
Q Consensus 73 ~~~~Ivl~GppGsGKSTlak~La~~l 98 (289)
+.-++.|+||.||||||+.+.|+..+
T Consensus 46 ~Ge~~~liG~NGsGKSTLlk~l~Gl~ 71 (279)
T 2ihy_A 46 KGDKWILYGLNGAGKTTLLNILNAYE 71 (279)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 34578999999999999999998654
No 350
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=95.81 E-value=0.0048 Score=57.31 Aligned_cols=26 Identities=31% Similarity=0.392 Sum_probs=22.4
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHHh
Q 022951 73 KHVQWVFLGCPGVGKGTYASRLSNLL 98 (289)
Q Consensus 73 ~~~~Ivl~GppGsGKSTlak~La~~l 98 (289)
..-++.|+||+||||||+.+.|+..+
T Consensus 28 ~Ge~~~llGpsGsGKSTLLr~iaGl~ 53 (381)
T 3rlf_A 28 EGEFVVFVGPSGCGKSTLLRMIAGLE 53 (381)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEEcCCCchHHHHHHHHHcCC
Confidence 34578999999999999999998754
No 351
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=95.80 E-value=0.0056 Score=49.01 Aligned_cols=24 Identities=25% Similarity=0.520 Sum_probs=21.2
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHH
Q 022951 73 KHVQWVFLGCPGVGKGTYASRLSN 96 (289)
Q Consensus 73 ~~~~Ivl~GppGsGKSTlak~La~ 96 (289)
..++|+|+|.+|+||||+..+|..
T Consensus 8 ~~~~i~v~G~~~~GKssl~~~l~~ 31 (181)
T 3tw8_B 8 HLFKLLIIGDSGVGKSSLLLRFAD 31 (181)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHCS
T ss_pred cceEEEEECCCCCCHHHHHHHHhc
Confidence 468899999999999999998853
No 352
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=95.80 E-value=0.0059 Score=48.75 Aligned_cols=24 Identities=33% Similarity=0.565 Sum_probs=21.3
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHH
Q 022951 73 KHVQWVFLGCPGVGKGTYASRLSN 96 (289)
Q Consensus 73 ~~~~Ivl~GppGsGKSTlak~La~ 96 (289)
+..+|+|+|++|+||||+..+|..
T Consensus 13 ~~~~i~v~G~~~~GKssli~~l~~ 36 (179)
T 2y8e_A 13 RKFKLVFLGEQSVGKTSLITRFMY 36 (179)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHc
Confidence 347899999999999999999974
No 353
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=95.79 E-value=0.0049 Score=54.06 Aligned_cols=26 Identities=27% Similarity=0.363 Sum_probs=22.1
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHHh
Q 022951 73 KHVQWVFLGCPGVGKGTYASRLSNLL 98 (289)
Q Consensus 73 ~~~~Ivl~GppGsGKSTlak~La~~l 98 (289)
..-++.|.||.||||||+.+.|+..+
T Consensus 40 ~Gei~~l~G~NGsGKSTLlk~l~Gl~ 65 (256)
T 1vpl_A 40 EGEIFGLIGPNGAGKTTTLRIISTLI 65 (256)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 34578999999999999999998654
No 354
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=95.79 E-value=0.0065 Score=49.44 Aligned_cols=26 Identities=27% Similarity=0.419 Sum_probs=22.4
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHHH
Q 022951 72 GKHVQWVFLGCPGVGKGTYASRLSNL 97 (289)
Q Consensus 72 ~~~~~Ivl~GppGsGKSTlak~La~~ 97 (289)
.+..+|+|+|++|+||||+.++|...
T Consensus 14 ~~~~ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 14 DQEVRILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp SSCEEEEEEESTTSSHHHHHHHHCCS
T ss_pred CCceEEEEECCCCCCHHHHHHHHhcC
Confidence 35688999999999999999998643
No 355
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=95.75 E-value=0.0098 Score=51.26 Aligned_cols=27 Identities=30% Similarity=0.452 Sum_probs=23.3
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHHHh
Q 022951 72 GKHVQWVFLGCPGVGKGTYASRLSNLL 98 (289)
Q Consensus 72 ~~~~~Ivl~GppGsGKSTlak~La~~l 98 (289)
.+..++++.|.+|+||||++..|+..+
T Consensus 12 ~~~~i~~~~GkgGvGKTTl~~~La~~l 38 (262)
T 1yrb_A 12 MASMIVVFVGTAGSGKTTLTGEFGRYL 38 (262)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred cceEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 346788899999999999999999654
No 356
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=95.75 E-value=0.0053 Score=56.50 Aligned_cols=25 Identities=28% Similarity=0.238 Sum_probs=21.8
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHHHh
Q 022951 74 HVQWVFLGCPGVGKGTYASRLSNLL 98 (289)
Q Consensus 74 ~~~Ivl~GppGsGKSTlak~La~~l 98 (289)
.-++.|.||+||||||+.+.|+..+
T Consensus 41 Ge~~~llGpnGsGKSTLLr~iaGl~ 65 (355)
T 1z47_A 41 GEMVGLLGPSGSGKTTILRLIAGLE 65 (355)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCC
Confidence 4578899999999999999998654
No 357
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=95.75 E-value=0.0062 Score=49.22 Aligned_cols=25 Identities=16% Similarity=0.337 Sum_probs=22.1
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHH
Q 022951 73 KHVQWVFLGCPGVGKGTYASRLSNL 97 (289)
Q Consensus 73 ~~~~Ivl~GppGsGKSTlak~La~~ 97 (289)
+...|+|+|++|+||||+.++|...
T Consensus 9 ~~~ki~v~G~~~~GKSsli~~l~~~ 33 (186)
T 2bme_A 9 FLFKFLVIGNAGTGKSCLLHQFIEK 33 (186)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred cceEEEEECCCCCCHHHHHHHHHcC
Confidence 4588999999999999999999753
No 358
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=95.74 E-value=0.007 Score=48.70 Aligned_cols=25 Identities=20% Similarity=0.298 Sum_probs=22.1
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHH
Q 022951 73 KHVQWVFLGCPGVGKGTYASRLSNL 97 (289)
Q Consensus 73 ~~~~Ivl~GppGsGKSTlak~La~~ 97 (289)
+.++|+|+|.+|+||||+..+|...
T Consensus 17 ~~~ki~v~G~~~~GKSsli~~l~~~ 41 (187)
T 2a9k_A 17 ALHKVIMVGSGGVGKSALTLQFMYD 41 (187)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred CceEEEEECCCCCCHHHHHHHHhhC
Confidence 4578999999999999999999854
No 359
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=95.74 E-value=0.0049 Score=49.67 Aligned_cols=24 Identities=38% Similarity=0.552 Sum_probs=21.5
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHH
Q 022951 72 GKHVQWVFLGCPGVGKGTYASRLS 95 (289)
Q Consensus 72 ~~~~~Ivl~GppGsGKSTlak~La 95 (289)
.+..+|+|+|++|+||||+..+|.
T Consensus 16 ~~~~~i~v~G~~~~GKssli~~l~ 39 (183)
T 1moz_A 16 NKELRILILGLDGAGKTTILYRLQ 39 (183)
T ss_dssp SSCEEEEEEEETTSSHHHHHHHTC
T ss_pred CCccEEEEECCCCCCHHHHHHHHh
Confidence 457899999999999999998885
No 360
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=95.73 E-value=0.0053 Score=54.04 Aligned_cols=26 Identities=23% Similarity=0.327 Sum_probs=22.1
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHHh
Q 022951 73 KHVQWVFLGCPGVGKGTYASRLSNLL 98 (289)
Q Consensus 73 ~~~~Ivl~GppGsGKSTlak~La~~l 98 (289)
..-++.|+||.||||||+.+.|+..+
T Consensus 32 ~Ge~~~liG~nGsGKSTLl~~i~Gl~ 57 (266)
T 2yz2_A 32 EGECLLVAGNTGSGKSTLLQIVAGLI 57 (266)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 34578899999999999999998654
No 361
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=95.72 E-value=0.0041 Score=57.25 Aligned_cols=26 Identities=27% Similarity=0.238 Sum_probs=22.8
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHHHhC
Q 022951 74 HVQWVFLGCPGVGKGTYASRLSNLLG 99 (289)
Q Consensus 74 ~~~Ivl~GppGsGKSTlak~La~~lg 99 (289)
..+++|+||+||||||+.+.|+..+.
T Consensus 175 G~~i~ivG~sGsGKSTll~~l~~~~~ 200 (361)
T 2gza_A 175 ERVIVVAGETGSGKTTLMKALMQEIP 200 (361)
T ss_dssp TCCEEEEESSSSCHHHHHHHHHTTSC
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 45789999999999999999988763
No 362
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=95.72 E-value=0.0037 Score=51.87 Aligned_cols=25 Identities=24% Similarity=0.408 Sum_probs=21.5
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHH
Q 022951 72 GKHVQWVFLGCPGVGKGTYASRLSN 96 (289)
Q Consensus 72 ~~~~~Ivl~GppGsGKSTlak~La~ 96 (289)
....+|+|+|++||||||+.+.|..
T Consensus 24 ~~~~~v~lvG~~g~GKSTLl~~l~g 48 (210)
T 1pui_A 24 DTGIEVAFAGRSNAGKSSALNTLTN 48 (210)
T ss_dssp SCSEEEEEEECTTSSHHHHHTTTCC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhC
Confidence 3567899999999999999998863
No 363
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=95.72 E-value=0.0042 Score=51.22 Aligned_cols=27 Identities=15% Similarity=0.282 Sum_probs=21.3
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHHHH
Q 022951 71 EGKHVQWVFLGCPGVGKGTYASRLSNL 97 (289)
Q Consensus 71 ~~~~~~Ivl~GppGsGKSTlak~La~~ 97 (289)
..+.++|+|+|.+|+||||+.++|...
T Consensus 17 ~~~~~ki~~vG~~~vGKTsLi~~l~~~ 43 (196)
T 3llu_A 17 QGSKPRILLMGLRRSGKSSIQKVVFHK 43 (196)
T ss_dssp ---CCEEEEEESTTSSHHHHHHHHHSC
T ss_pred cCcceEEEEECCCCCCHHHHHHHHHhc
Confidence 345689999999999999999877653
No 364
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=95.71 E-value=0.0065 Score=49.86 Aligned_cols=25 Identities=28% Similarity=0.562 Sum_probs=21.7
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHH
Q 022951 72 GKHVQWVFLGCPGVGKGTYASRLSN 96 (289)
Q Consensus 72 ~~~~~Ivl~GppGsGKSTlak~La~ 96 (289)
...+.|+|+|.+|+||||+.++|..
T Consensus 24 ~~~~ki~vvG~~~~GKSsLi~~l~~ 48 (192)
T 2il1_A 24 DFKLQVIIIGSRGVGKTSLMERFTD 48 (192)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHCC
T ss_pred CCceEEEEECCCCCCHHHHHHHHhc
Confidence 3568899999999999999999853
No 365
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=95.71 E-value=0.0063 Score=56.08 Aligned_cols=26 Identities=27% Similarity=0.273 Sum_probs=22.3
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHHh
Q 022951 73 KHVQWVFLGCPGVGKGTYASRLSNLL 98 (289)
Q Consensus 73 ~~~~Ivl~GppGsGKSTlak~La~~l 98 (289)
..-++.|.||+||||||+.+.|+..+
T Consensus 28 ~Ge~~~llGpnGsGKSTLLr~iaGl~ 53 (359)
T 2yyz_A 28 DGEFVALLGPSGCGKTTTLLMLAGIY 53 (359)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEEcCCCchHHHHHHHHHCCC
Confidence 34578999999999999999998754
No 366
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=95.70 E-value=0.0083 Score=48.99 Aligned_cols=24 Identities=29% Similarity=0.504 Sum_probs=21.8
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHH
Q 022951 73 KHVQWVFLGCPGVGKGTYASRLSN 96 (289)
Q Consensus 73 ~~~~Ivl~GppGsGKSTlak~La~ 96 (289)
....|+|+|.+|+||||+..+|..
T Consensus 7 ~~~ki~vvG~~~~GKSsli~~l~~ 30 (199)
T 2gf0_A 7 NDYRVVVFGAGGVGKSSLVLRFVK 30 (199)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHH
T ss_pred CeeEEEEECCCCCcHHHHHHHHHc
Confidence 468899999999999999999976
No 367
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=95.70 E-value=0.0068 Score=55.11 Aligned_cols=31 Identities=19% Similarity=0.147 Sum_probs=25.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhC--CCeeeh
Q 022951 75 VQWVFLGCPGVGKGTYASRLSNLLG--VPHIAT 105 (289)
Q Consensus 75 ~~Ivl~GppGsGKSTlak~La~~lg--~~~i~~ 105 (289)
..++|.||||+||||+|..++...| +.|++.
T Consensus 124 sviLI~GpPGsGKTtLAlqlA~~~G~~VlyIs~ 156 (331)
T 2vhj_A 124 GMVIVTGKGNSGKTPLVHALGEALGGKDKYATV 156 (331)
T ss_dssp EEEEEECSCSSSHHHHHHHHHHHHHTTSCCEEE
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhCCCCEEEEEe
Confidence 4578999999999999999987643 456766
No 368
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=95.68 E-value=0.005 Score=53.84 Aligned_cols=25 Identities=28% Similarity=0.271 Sum_probs=21.7
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHHHh
Q 022951 74 HVQWVFLGCPGVGKGTYASRLSNLL 98 (289)
Q Consensus 74 ~~~Ivl~GppGsGKSTlak~La~~l 98 (289)
.-++.|.||.||||||+.+.|+..+
T Consensus 31 Ge~~~l~G~nGsGKSTLl~~l~Gl~ 55 (253)
T 2nq2_C 31 GDILAVLGQNGCGKSTLLDLLLGIH 55 (253)
T ss_dssp TCEEEEECCSSSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4578899999999999999998654
No 369
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=95.67 E-value=0.0036 Score=60.24 Aligned_cols=24 Identities=33% Similarity=0.477 Sum_probs=21.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHhC
Q 022951 76 QWVFLGCPGVGKGTYASRLSNLLG 99 (289)
Q Consensus 76 ~Ivl~GppGsGKSTlak~La~~lg 99 (289)
-++|+||||+|||++|+.|+..++
T Consensus 43 ~VLL~GpPGtGKT~LAraLa~~l~ 66 (500)
T 3nbx_X 43 SVFLLGPPGIAKSLIARRLKFAFQ 66 (500)
T ss_dssp EEEEECCSSSSHHHHHHHGGGGBS
T ss_pred eeEeecCchHHHHHHHHHHHHHHh
Confidence 579999999999999999999774
No 370
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=95.67 E-value=0.0065 Score=56.03 Aligned_cols=26 Identities=23% Similarity=0.331 Sum_probs=22.3
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHHh
Q 022951 73 KHVQWVFLGCPGVGKGTYASRLSNLL 98 (289)
Q Consensus 73 ~~~~Ivl~GppGsGKSTlak~La~~l 98 (289)
..-++.|.||+||||||+.+.|+..+
T Consensus 28 ~Ge~~~llGpnGsGKSTLLr~iaGl~ 53 (362)
T 2it1_A 28 DGEFMALLGPSGSGKSTLLYTIAGIY 53 (362)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCchHHHHHHHHhcCC
Confidence 34578999999999999999998754
No 371
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=95.67 E-value=0.0055 Score=50.73 Aligned_cols=23 Identities=30% Similarity=0.476 Sum_probs=20.8
Q ss_pred CceEEEEEcCCCCCHHHHHHHHH
Q 022951 73 KHVQWVFLGCPGVGKGTYASRLS 95 (289)
Q Consensus 73 ~~~~Ivl~GppGsGKSTlak~La 95 (289)
...+|+|+|.+|+||||+.++|.
T Consensus 22 ~~~ki~vvG~~~vGKSsLi~~l~ 44 (195)
T 3cbq_A 22 GIFKVMLVGESGVGKSTLAGTFG 44 (195)
T ss_dssp CEEEEEEECSTTSSHHHHHHHTC
T ss_pred cEEEEEEECCCCCCHHHHHHHHH
Confidence 46899999999999999999885
No 372
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=95.66 E-value=0.006 Score=56.51 Aligned_cols=25 Identities=28% Similarity=0.327 Sum_probs=21.8
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHHHh
Q 022951 74 HVQWVFLGCPGVGKGTYASRLSNLL 98 (289)
Q Consensus 74 ~~~Ivl~GppGsGKSTlak~La~~l 98 (289)
.-++.|.||+||||||+.+.|+..+
T Consensus 29 Ge~~~llGpnGsGKSTLLr~iaGl~ 53 (372)
T 1g29_1 29 GEFMILLGPSGCGKTTTLRMIAGLE 53 (372)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CCEEEEECCCCcHHHHHHHHHHcCC
Confidence 4578999999999999999998654
No 373
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=95.65 E-value=0.0087 Score=48.75 Aligned_cols=25 Identities=24% Similarity=0.397 Sum_probs=22.2
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHH
Q 022951 73 KHVQWVFLGCPGVGKGTYASRLSNL 97 (289)
Q Consensus 73 ~~~~Ivl~GppGsGKSTlak~La~~ 97 (289)
..++|+|+|++|+||||+..+|...
T Consensus 15 ~~~ki~v~G~~~~GKSsli~~l~~~ 39 (196)
T 3tkl_A 15 YLFKLLLIGDSGVGKSCLLLRFADD 39 (196)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred cceEEEEECcCCCCHHHHHHHHHcC
Confidence 4678999999999999999999753
No 374
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=95.64 E-value=0.0083 Score=49.34 Aligned_cols=27 Identities=22% Similarity=0.249 Sum_probs=23.0
Q ss_pred CCCCceEEEEEcCCCCCHHHHHHHHHH
Q 022951 70 GEGKHVQWVFLGCPGVGKGTYASRLSN 96 (289)
Q Consensus 70 ~~~~~~~Ivl~GppGsGKSTlak~La~ 96 (289)
...+..+|+|+|++|+||||+..+|..
T Consensus 25 ~~~~~~ki~v~G~~~vGKSsLi~~l~~ 51 (192)
T 2b6h_A 25 FGKKQMRILMVGLDAAGKTTILYKLKL 51 (192)
T ss_dssp TTTSCEEEEEEESTTSSHHHHHHHHCS
T ss_pred ccCCccEEEEECCCCCCHHHHHHHHHh
Confidence 345678999999999999999998853
No 375
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=95.63 E-value=0.0069 Score=56.09 Aligned_cols=26 Identities=31% Similarity=0.328 Sum_probs=22.3
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHHh
Q 022951 73 KHVQWVFLGCPGVGKGTYASRLSNLL 98 (289)
Q Consensus 73 ~~~~Ivl~GppGsGKSTlak~La~~l 98 (289)
..-++.|.||+||||||+.+.|+..+
T Consensus 36 ~Ge~~~llGpnGsGKSTLLr~iaGl~ 61 (372)
T 1v43_A 36 DGEFLVLLGPSGCGKTTTLRMIAGLE 61 (372)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCChHHHHHHHHHcCC
Confidence 34578999999999999999998654
No 376
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=95.63 E-value=0.01 Score=49.29 Aligned_cols=27 Identities=22% Similarity=0.200 Sum_probs=23.1
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHHHH
Q 022951 71 EGKHVQWVFLGCPGVGKGTYASRLSNL 97 (289)
Q Consensus 71 ~~~~~~Ivl~GppGsGKSTlak~La~~ 97 (289)
.....+|+|+|.+|+||||+..+|...
T Consensus 6 ~~~~~ki~i~G~~~~GKTsli~~l~~~ 32 (212)
T 2j0v_A 6 VSKFIKCVTVGDGAVGKTCMLICYTSN 32 (212)
T ss_dssp CCCEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred cCceEEEEEECCCCCCHHHHHHHHhcC
Confidence 345689999999999999999998753
No 377
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=95.60 E-value=0.0082 Score=49.88 Aligned_cols=25 Identities=24% Similarity=0.386 Sum_probs=21.4
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHH
Q 022951 72 GKHVQWVFLGCPGVGKGTYASRLSN 96 (289)
Q Consensus 72 ~~~~~Ivl~GppGsGKSTlak~La~ 96 (289)
.+..+|+|+|.+|+||||+..+|..
T Consensus 28 ~~~~ki~vvG~~~~GKSsLi~~l~~ 52 (204)
T 4gzl_A 28 GQAIKCVVVGDGAVGKTCLLISYTT 52 (204)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCeEEEEEECcCCCCHHHHHHHHHh
Confidence 4568999999999999999998875
No 378
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=95.59 E-value=0.0057 Score=53.85 Aligned_cols=25 Identities=36% Similarity=0.461 Sum_probs=21.4
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHHHh
Q 022951 74 HVQWVFLGCPGVGKGTYASRLSNLL 98 (289)
Q Consensus 74 ~~~Ivl~GppGsGKSTlak~La~~l 98 (289)
.-++.|.||.||||||+.+.|+..+
T Consensus 30 Ge~~~i~G~NGsGKSTLlk~l~Gl~ 54 (263)
T 2pjz_A 30 GEKVIILGPNGSGKTTLLRAISGLL 54 (263)
T ss_dssp SSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEEECCCCCCHHHHHHHHhCCC
Confidence 4578999999999999999997643
No 379
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=95.59 E-value=0.0092 Score=48.52 Aligned_cols=25 Identities=20% Similarity=0.256 Sum_probs=22.3
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHH
Q 022951 72 GKHVQWVFLGCPGVGKGTYASRLSN 96 (289)
Q Consensus 72 ~~~~~Ivl~GppGsGKSTlak~La~ 96 (289)
.+..+|+|+|.+|+||||+.++|..
T Consensus 14 ~~~~~i~v~G~~~~GKssl~~~l~~ 38 (187)
T 1zj6_A 14 HQEHKVIIVGLDNAGKTTILYQFSM 38 (187)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHHT
T ss_pred CCccEEEEECCCCCCHHHHHHHHhc
Confidence 4568999999999999999999974
No 380
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=95.58 E-value=0.0076 Score=51.52 Aligned_cols=25 Identities=20% Similarity=0.430 Sum_probs=21.8
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHH
Q 022951 72 GKHVQWVFLGCPGVGKGTYASRLSN 96 (289)
Q Consensus 72 ~~~~~Ivl~GppGsGKSTlak~La~ 96 (289)
...++|+|+|++|+||||+.+.|..
T Consensus 27 ~~~~~i~lvG~~g~GKStlin~l~g 51 (239)
T 3lxx_A 27 NSQLRIVLVGKTGAGKSATGNSILG 51 (239)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHT
T ss_pred CCceEEEEECCCCCCHHHHHHHHcC
Confidence 3568999999999999999999875
No 381
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=95.58 E-value=0.0089 Score=47.12 Aligned_cols=23 Identities=22% Similarity=0.267 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHH
Q 022951 75 VQWVFLGCPGVGKGTYASRLSNL 97 (289)
Q Consensus 75 ~~Ivl~GppGsGKSTlak~La~~ 97 (289)
++|+|+|.+|+||||+..+|...
T Consensus 1 ~ki~~~G~~~~GKssl~~~l~~~ 23 (164)
T 1r8s_A 1 MRILMVGLDAAGKTTILYKLKLG 23 (164)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHcC
Confidence 36899999999999999999754
No 382
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=95.57 E-value=0.0082 Score=48.62 Aligned_cols=25 Identities=20% Similarity=0.436 Sum_probs=21.8
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHH
Q 022951 72 GKHVQWVFLGCPGVGKGTYASRLSN 96 (289)
Q Consensus 72 ~~~~~Ivl~GppGsGKSTlak~La~ 96 (289)
.+..+|+|+|++|+||||+..+|..
T Consensus 16 ~~~~~i~v~G~~~~GKssl~~~l~~ 40 (186)
T 1ksh_A 16 ERELRLLMLGLDNAGKTTILKKFNG 40 (186)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHTT
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhc
Confidence 4568999999999999999999864
No 383
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=95.57 E-value=0.0087 Score=60.24 Aligned_cols=33 Identities=30% Similarity=0.540 Sum_probs=26.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHh---C--CCeeehHHH
Q 022951 76 QWVFLGCPGVGKGTYASRLSNLL---G--VPHIATGDL 108 (289)
Q Consensus 76 ~Ivl~GppGsGKSTlak~La~~l---g--~~~i~~d~l 108 (289)
.++|+||||+|||++|+.|++.+ + +..++..++
T Consensus 523 ~~Ll~Gp~GtGKT~lA~ala~~l~~~~~~~i~i~~s~~ 560 (758)
T 3pxi_A 523 SFIFLGPTGVGKTELARALAESIFGDEESMIRIDMSEY 560 (758)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHHHSCTTCEEEEEGGGG
T ss_pred EEEEECCCCCCHHHHHHHHHHHhcCCCcceEEEechhc
Confidence 68999999999999999999986 3 344555444
No 384
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=95.57 E-value=0.0094 Score=47.93 Aligned_cols=24 Identities=21% Similarity=0.311 Sum_probs=21.4
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHH
Q 022951 73 KHVQWVFLGCPGVGKGTYASRLSN 96 (289)
Q Consensus 73 ~~~~Ivl~GppGsGKSTlak~La~ 96 (289)
+...|+|+|.+|+||||+..+|..
T Consensus 4 ~~~~i~~~G~~~~GKssl~~~l~~ 27 (186)
T 1mh1_A 4 QAIKCVVVGDGAVGKTCLLISYTT 27 (186)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHH
T ss_pred cEEEEEEECCCCCCHHHHHHHHHc
Confidence 457899999999999999999875
No 385
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=95.56 E-value=0.0086 Score=49.31 Aligned_cols=25 Identities=28% Similarity=0.422 Sum_probs=22.2
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHH
Q 022951 73 KHVQWVFLGCPGVGKGTYASRLSNL 97 (289)
Q Consensus 73 ~~~~Ivl~GppGsGKSTlak~La~~ 97 (289)
...+|+|+|.+|+||||+..+|...
T Consensus 7 ~~~ki~v~G~~~~GKSsli~~l~~~ 31 (207)
T 1vg8_A 7 VLLKVIILGDSGVGKTSLMNQYVNK 31 (207)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred cceEEEEECcCCCCHHHHHHHHHcC
Confidence 4678999999999999999999764
No 386
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=95.56 E-value=0.0079 Score=49.41 Aligned_cols=25 Identities=40% Similarity=0.486 Sum_probs=21.0
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHH
Q 022951 73 KHVQWVFLGCPGVGKGTYASRLSNL 97 (289)
Q Consensus 73 ~~~~Ivl~GppGsGKSTlak~La~~ 97 (289)
+..+|+|+|++|+||||+.++|...
T Consensus 22 ~~~ki~~vG~~~vGKSsli~~l~~~ 46 (190)
T 1m2o_B 22 KHGKLLFLGLDNAGKTTLLHMLKND 46 (190)
T ss_dssp --CEEEEEESTTSSHHHHHHHHHHS
T ss_pred CccEEEEECCCCCCHHHHHHHHhcC
Confidence 4568999999999999999999863
No 387
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=95.56 E-value=0.0096 Score=55.98 Aligned_cols=27 Identities=26% Similarity=0.139 Sum_probs=23.6
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhC
Q 022951 73 KHVQWVFLGCPGVGKGTYASRLSNLLG 99 (289)
Q Consensus 73 ~~~~Ivl~GppGsGKSTlak~La~~lg 99 (289)
+.-+++|+||+||||||+.+.|...+.
T Consensus 166 ~ggii~I~GpnGSGKTTlL~allg~l~ 192 (418)
T 1p9r_A 166 PHGIILVTGPTGSGKSTTLYAGLQELN 192 (418)
T ss_dssp SSEEEEEECSTTSCHHHHHHHHHHHHC
T ss_pred cCCeEEEECCCCCCHHHHHHHHHhhcC
Confidence 446899999999999999999998773
No 388
>4dey_A Voltage-dependent L-type calcium channel subunit; maguk, voltage dependent calcium channel, transport protein; 1.95A {Oryctolagus cuniculus} PDB: 4dex_A 1t3l_A 1t3s_A 1vyv_A 1vyu_A 1vyt_A 1t0h_B 1t0j_B 1t0h_A 1t0j_A
Probab=95.55 E-value=0.088 Score=47.84 Aligned_cols=151 Identities=12% Similarity=0.058 Sum_probs=78.4
Q ss_pred EEEEcCCCCCHHH-------HHHHHHHHhCCCeeeh---HHHH------------HHHHHcCCcc-CHHHHHHHHHHHHH
Q 022951 77 WVFLGCPGVGKGT-------YASRLSNLLGVPHIAT---GDLL------------DEIVSQGKLV-SDEIIINLLSKRLE 133 (289)
Q Consensus 77 Ivl~GppGsGKST-------lak~La~~lg~~~i~~---d~l~------------~~~l~~g~~v-~~~~~~~ll~~~l~ 133 (289)
|+|+||.++|--+ +-..|-++|+..+.-+ .++. +..+..+..- ........++..+.
T Consensus 145 vvlvGP~~~g~~~td~m~~~l~d~l~~~F~~~i~~tR~~~d~~~~~r~~~~~~~~~~~~e~~~~~~~~~ev~seVe~i~~ 224 (337)
T 4dey_A 145 VVLVGPSLKGYEVTDMMQKALFDFLKHRFEGRISITRVTADISLAKRSVLNNPSKHAIIERSNTRSSLAEVQSEIERIFE 224 (337)
T ss_dssp EEEECSSCTTSHHHHHHHHHHHHHHHHHTTTSEEEEEECSCGGGC-------------------CCCHHHHHHHHHHHHH
T ss_pred eEEECCccccchhHHHHHHHHHHhhHHhcCCccceEeecchhhhcchhhhhcccchhhhcccccccchHHHHhHHHHHHH
Confidence 8899999999863 6677777887653211 0111 1111111100 11112223344333
Q ss_pred cccccCCceEEEcCccc-H-HHHhhcCCCcEEEEEec-CHHHHHHHHhcccccccCCCccccccccccCCCCCCCCCCCC
Q 022951 134 AGEAKGEAGFILDGFPR-T-EILEGVTDIDLVINLKL-REEALLAKCLGRRICSECGGNYNVACIDIKGENGNPGMYMGP 210 (289)
Q Consensus 134 ~~~~~~~~g~Ildg~p~-~-~~l~~~~~~d~vI~Ld~-~~e~l~~Rl~~R~~~~~~g~~y~~~~~~~~~~~~~~~~~~~~ 210 (289)
.... +..+|||--.. . .++......-++||+.. +.+++.+||.+|..
T Consensus 225 v~~~--Gk~vILDIDvQnGa~qlk~~~~~~i~IFI~PPS~eeLe~RL~~RGt---------------------------- 274 (337)
T 4dey_A 225 LART--LQLVVLDADTINHPAQLSKTSLAPIVVYVKISSPKVLQRLIKSRGK---------------------------- 274 (337)
T ss_dssp HTTT--CCEEEEEETTCCSGGGTTTSSCCCEEEEECCSCHHHHHHHHHTTCH----------------------------
T ss_pred HHhC--CCEEEEEeCcHHHHHHHHhcCCCCEEEEEECcCHHHHHHHHHhCCc----------------------------
Confidence 3222 56888886443 2 33443332345566655 57899999988852
Q ss_pred CCCCCccccCccccCCCcHHHHHHHHHHHHHhchHHHHHHHHcCcEEEEeCCCCcccHHHHHHHHhccC
Q 022951 211 LLPPPHCASKLITRSDDKEEVVRERLRIYNEKSRPVEEFYRRRGKLLEFDLPGGIPESWPKLLQALNLE 279 (289)
Q Consensus 211 ~~~~~~~~~~L~~r~~d~~~~~~~rl~~y~~~~~~l~~~y~~~~~l~~id~~~~~~ev~~~i~~~l~~~ 279 (289)
+..+.++.++...... ...|.....++.|| .++++.+.+|.++|...
T Consensus 275 ----------------~~~~rl~~al~~ae~E----~~~~~~~FDyvIVN--DdLe~A~~~L~~iI~~~ 321 (337)
T 4dey_A 275 ----------------SQAKHLNVQMVAADKL----AQCPPELFDVILDE--NQLEDACEHLADYLEAY 321 (337)
T ss_dssp ----------------HHHTTHHHHHHHHHHH----HHSCGGGCSEEECC--SSHHHHHHHHHHHHHHH
T ss_pred ----------------hHHHHHHHHHHHHHHH----HhhCcccCCEEEEC--CCHHHHHHHHHHHHHHH
Confidence 2233444554433332 22222333455554 46999999999998764
No 389
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=95.54 E-value=0.0082 Score=49.19 Aligned_cols=25 Identities=28% Similarity=0.493 Sum_probs=22.2
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHH
Q 022951 73 KHVQWVFLGCPGVGKGTYASRLSNL 97 (289)
Q Consensus 73 ~~~~Ivl~GppGsGKSTlak~La~~ 97 (289)
+..+|+|+|++|+||||+..+|...
T Consensus 22 ~~~ki~vvG~~~~GKSsli~~l~~~ 46 (192)
T 2fg5_A 22 RELKVCLLGDTGVGKSSIVCRFVQD 46 (192)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHC
T ss_pred CceEEEEECcCCCCHHHHHHHHhcC
Confidence 4688999999999999999999754
No 390
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=95.54 E-value=0.0081 Score=49.68 Aligned_cols=25 Identities=16% Similarity=0.392 Sum_probs=21.8
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHH
Q 022951 72 GKHVQWVFLGCPGVGKGTYASRLSN 96 (289)
Q Consensus 72 ~~~~~Ivl~GppGsGKSTlak~La~ 96 (289)
.+..+|+|+|.+|+||||+.++|..
T Consensus 23 ~~~~ki~v~G~~~~GKSsLi~~l~~ 47 (200)
T 2o52_A 23 DFLFKFLVIGSAGTGKSCLLHQFIE 47 (200)
T ss_dssp CEEEEEEEEESTTSSHHHHHHHHHC
T ss_pred CcceEEEEECcCCCCHHHHHHHHHh
Confidence 3568999999999999999999863
No 391
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=95.53 E-value=0.0081 Score=52.02 Aligned_cols=24 Identities=17% Similarity=0.389 Sum_probs=21.6
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHH
Q 022951 73 KHVQWVFLGCPGVGKGTYASRLSN 96 (289)
Q Consensus 73 ~~~~Ivl~GppGsGKSTlak~La~ 96 (289)
..++|+|+|.+|+||||+...|..
T Consensus 20 ~~l~I~lvG~~g~GKSSlin~l~~ 43 (247)
T 3lxw_A 20 STRRLILVGRTGAGKSATGNSILG 43 (247)
T ss_dssp CEEEEEEESSTTSSHHHHHHHHHT
T ss_pred CceEEEEECCCCCcHHHHHHHHhC
Confidence 568999999999999999998864
No 392
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=95.53 E-value=0.0087 Score=48.98 Aligned_cols=26 Identities=27% Similarity=0.241 Sum_probs=22.9
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHHH
Q 022951 72 GKHVQWVFLGCPGVGKGTYASRLSNL 97 (289)
Q Consensus 72 ~~~~~Ivl~GppGsGKSTlak~La~~ 97 (289)
.+.++|+|+|.+|+||||+..+|...
T Consensus 21 ~~~~ki~~vG~~~~GKSsl~~~l~~~ 46 (194)
T 3reg_A 21 KKALKIVVVGDGAVGKTCLLLAFSKG 46 (194)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceeeEEEEECcCCCCHHHHHHHHhcC
Confidence 35689999999999999999999764
No 393
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=95.53 E-value=0.0089 Score=54.70 Aligned_cols=26 Identities=23% Similarity=0.256 Sum_probs=23.1
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHHh
Q 022951 73 KHVQWVFLGCPGVGKGTYASRLSNLL 98 (289)
Q Consensus 73 ~~~~Ivl~GppGsGKSTlak~La~~l 98 (289)
...++.|+|++||||||+++.|+..+
T Consensus 130 ~G~i~~I~G~~GsGKTTL~~~l~~~~ 155 (349)
T 1pzn_A 130 TQAITEVFGEFGSGKTQLAHTLAVMV 155 (349)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 45688999999999999999999876
No 394
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=95.52 E-value=0.0093 Score=48.54 Aligned_cols=24 Identities=25% Similarity=0.404 Sum_probs=21.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHhC
Q 022951 76 QWVFLGCPGVGKGTYASRLSNLLG 99 (289)
Q Consensus 76 ~Ivl~GppGsGKSTlak~La~~lg 99 (289)
+.+|+|+.||||||+.+.|.-.++
T Consensus 28 ~~~i~G~NGsGKStll~ai~~~l~ 51 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAILFVLG 51 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHTT
T ss_pred cEEEECCCCCCHHHHHHHHHHHHc
Confidence 788999999999999999987665
No 395
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=95.52 E-value=0.007 Score=56.39 Aligned_cols=25 Identities=32% Similarity=0.341 Sum_probs=21.6
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHH
Q 022951 73 KHVQWVFLGCPGVGKGTYASRLSNL 97 (289)
Q Consensus 73 ~~~~Ivl~GppGsGKSTlak~La~~ 97 (289)
..-++.|+||+||||||+.+.|+..
T Consensus 46 ~Ge~~~llGpsGsGKSTLLr~iaGl 70 (390)
T 3gd7_A 46 PGQRVGLLGRTGSGKSTLLSAFLRL 70 (390)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCChHHHHHHHHhCC
Confidence 3457899999999999999999864
No 396
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=95.50 E-value=0.0075 Score=49.00 Aligned_cols=25 Identities=24% Similarity=0.477 Sum_probs=21.9
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHH
Q 022951 73 KHVQWVFLGCPGVGKGTYASRLSNL 97 (289)
Q Consensus 73 ~~~~Ivl~GppGsGKSTlak~La~~ 97 (289)
+..+|+|+|.+|+||||+..+|...
T Consensus 14 ~~~~i~v~G~~~~GKssli~~l~~~ 38 (195)
T 1x3s_A 14 TTLKILIIGESGVGKSSLLLRFTDD 38 (195)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred CceEEEEECCCCCCHHHHHHHHHcC
Confidence 3578999999999999999999754
No 397
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=95.49 E-value=0.0095 Score=54.81 Aligned_cols=33 Identities=21% Similarity=0.154 Sum_probs=26.0
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHHh---C--CCeeeh
Q 022951 73 KHVQWVFLGCPGVGKGTYASRLSNLL---G--VPHIAT 105 (289)
Q Consensus 73 ~~~~Ivl~GppGsGKSTlak~La~~l---g--~~~i~~ 105 (289)
+..++.|.|||||||||++..++..+ + +.|++.
T Consensus 60 ~G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~ 97 (356)
T 3hr8_A 60 RGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDA 97 (356)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEec
Confidence 34688999999999999999998764 2 345654
No 398
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=95.47 E-value=0.0063 Score=57.46 Aligned_cols=26 Identities=31% Similarity=0.502 Sum_probs=23.1
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHHh
Q 022951 73 KHVQWVFLGCPGVGKGTYASRLSNLL 98 (289)
Q Consensus 73 ~~~~Ivl~GppGsGKSTlak~La~~l 98 (289)
.+.+|+|+|++|+||||++..|+..+
T Consensus 98 ~~~vI~ivG~~GvGKTTla~~La~~l 123 (432)
T 2v3c_C 98 KQNVILLVGIQGSGKTTTAAKLARYI 123 (432)
T ss_dssp SCCCEEEECCSSSSTTHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 45689999999999999999999876
No 399
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=95.47 E-value=0.0095 Score=48.96 Aligned_cols=25 Identities=28% Similarity=0.478 Sum_probs=21.1
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHH
Q 022951 72 GKHVQWVFLGCPGVGKGTYASRLSN 96 (289)
Q Consensus 72 ~~~~~Ivl~GppGsGKSTlak~La~ 96 (289)
.+..+|+|+|.+|+||||+..+|..
T Consensus 18 ~~~~ki~~~G~~~~GKssl~~~l~~ 42 (201)
T 2q3h_A 18 GRGVKCVLVGDGAVGKTSLVVSYTT 42 (201)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHC
T ss_pred CcceEEEEECCCCCCHHHHHHHHHh
Confidence 4568999999999999999998864
No 400
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=95.45 E-value=0.012 Score=49.84 Aligned_cols=25 Identities=24% Similarity=0.488 Sum_probs=22.1
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHH
Q 022951 72 GKHVQWVFLGCPGVGKGTYASRLSN 96 (289)
Q Consensus 72 ~~~~~Ivl~GppGsGKSTlak~La~ 96 (289)
.+...|+|+|.+|+||||+..+|..
T Consensus 27 ~~~~kI~vvG~~~vGKSsLin~l~~ 51 (228)
T 2qu8_A 27 PHKKTIILSGAPNVGKSSFMNIVSR 51 (228)
T ss_dssp TTSEEEEEECSTTSSHHHHHHHHTT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhC
Confidence 4568999999999999999999864
No 401
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=95.44 E-value=0.0058 Score=56.09 Aligned_cols=26 Identities=23% Similarity=0.400 Sum_probs=22.2
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHHh
Q 022951 73 KHVQWVFLGCPGVGKGTYASRLSNLL 98 (289)
Q Consensus 73 ~~~~Ivl~GppGsGKSTlak~La~~l 98 (289)
..-++.|.||+||||||+.+.|+..+
T Consensus 25 ~Ge~~~llGpnGsGKSTLLr~iaGl~ 50 (348)
T 3d31_A 25 SGEYFVILGPTGAGKTLFLELIAGFH 50 (348)
T ss_dssp TTCEEEEECCCTHHHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCccHHHHHHHHHcCC
Confidence 34578999999999999999998654
No 402
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=95.44 E-value=0.01 Score=48.42 Aligned_cols=26 Identities=19% Similarity=0.336 Sum_probs=22.9
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHHh
Q 022951 73 KHVQWVFLGCPGVGKGTYASRLSNLL 98 (289)
Q Consensus 73 ~~~~Ivl~GppGsGKSTlak~La~~l 98 (289)
..++|+|+|.+|+||||+..+|....
T Consensus 22 ~~~ki~v~G~~~~GKSsli~~l~~~~ 47 (191)
T 3dz8_A 22 YMFKLLIIGNSSVGKTSFLFRYADDT 47 (191)
T ss_dssp ECEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred eeeEEEEECCCCcCHHHHHHHHhcCC
Confidence 45899999999999999999998653
No 403
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=95.44 E-value=0.0093 Score=49.59 Aligned_cols=25 Identities=24% Similarity=0.202 Sum_probs=21.3
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHH
Q 022951 73 KHVQWVFLGCPGVGKGTYASRLSNL 97 (289)
Q Consensus 73 ~~~~Ivl~GppGsGKSTlak~La~~ 97 (289)
+..+|+|+|.+|+||||+..+|...
T Consensus 6 ~~~ki~vvG~~~~GKTsli~~l~~~ 30 (214)
T 2fh5_B 6 SQRAVLFVGLCDSGKTLLFVRLLTG 30 (214)
T ss_dssp --CEEEEECSTTSSHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4678999999999999999999864
No 404
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=95.44 E-value=0.015 Score=48.61 Aligned_cols=26 Identities=19% Similarity=-0.060 Sum_probs=22.9
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHHh
Q 022951 73 KHVQWVFLGCPGVGKGTYASRLSNLL 98 (289)
Q Consensus 73 ~~~~Ivl~GppGsGKSTlak~La~~l 98 (289)
+..+++++|++||||||.+-.++..+
T Consensus 7 ~g~i~v~~G~mgsGKTT~ll~~a~r~ 32 (191)
T 1xx6_A 7 HGWVEVIVGPMYSGKSEELIRRIRRA 32 (191)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHH
Confidence 34789999999999999998888877
No 405
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=95.44 E-value=0.0069 Score=61.88 Aligned_cols=24 Identities=33% Similarity=0.517 Sum_probs=22.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHh
Q 022951 75 VQWVFLGCPGVGKGTYASRLSNLL 98 (289)
Q Consensus 75 ~~Ivl~GppGsGKSTlak~La~~l 98 (289)
..++|+||||+||||+++.|++.+
T Consensus 192 ~~vlL~G~pG~GKT~la~~la~~l 215 (854)
T 1qvr_A 192 NNPVLIGEPGVGKTAIVEGLAQRI 215 (854)
T ss_dssp CCCEEEECTTSCHHHHHHHHHHHH
T ss_pred CceEEEcCCCCCHHHHHHHHHHHH
Confidence 457899999999999999999987
No 406
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=95.42 E-value=0.0091 Score=55.14 Aligned_cols=26 Identities=23% Similarity=0.298 Sum_probs=22.3
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHHh
Q 022951 73 KHVQWVFLGCPGVGKGTYASRLSNLL 98 (289)
Q Consensus 73 ~~~~Ivl~GppGsGKSTlak~La~~l 98 (289)
+.-++.|+||+||||||+.+.|+..+
T Consensus 53 ~Gei~~IiGpnGaGKSTLlr~i~GL~ 78 (366)
T 3tui_C 53 AGQIYGVIGASGAGKSTLIRCVNLLE 78 (366)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEEcCCCchHHHHHHHHhcCC
Confidence 34578999999999999999998654
No 407
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=95.41 E-value=0.011 Score=48.94 Aligned_cols=24 Identities=25% Similarity=0.469 Sum_probs=21.2
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHH
Q 022951 73 KHVQWVFLGCPGVGKGTYASRLSN 96 (289)
Q Consensus 73 ~~~~Ivl~GppGsGKSTlak~La~ 96 (289)
..+.|+|+|++|+||||+..+|..
T Consensus 19 ~~~~i~v~G~~~~GKSsli~~l~~ 42 (213)
T 3cph_A 19 SIMKILLIGDSGVGKSCLLVRFVE 42 (213)
T ss_dssp -CEEEEEECSTTSSHHHHHHHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHh
Confidence 468899999999999999999975
No 408
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=95.40 E-value=0.0094 Score=52.16 Aligned_cols=24 Identities=33% Similarity=0.450 Sum_probs=21.3
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHHH
Q 022951 74 HVQWVFLGCPGVGKGTYASRLSNL 97 (289)
Q Consensus 74 ~~~Ivl~GppGsGKSTlak~La~~ 97 (289)
.++|+|+|+|||||||+.++|...
T Consensus 3 ~~~i~lvG~~g~GKTTL~n~l~g~ 26 (271)
T 3k53_A 3 LKTVALVGNPNVGKTTIFNALTGL 26 (271)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHTT
T ss_pred eeEEEEECCCCCCHHHHHHHHhCC
Confidence 468999999999999999999754
No 409
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=95.40 E-value=0.0078 Score=53.75 Aligned_cols=26 Identities=19% Similarity=0.244 Sum_probs=22.3
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHHh
Q 022951 73 KHVQWVFLGCPGVGKGTYASRLSNLL 98 (289)
Q Consensus 73 ~~~~Ivl~GppGsGKSTlak~La~~l 98 (289)
+.-++.|+||.||||||+.+.|+..+
T Consensus 63 ~Ge~~~i~G~NGsGKSTLlk~l~Gl~ 88 (290)
T 2bbs_A 63 RGQLLAVAGSTGAGKTSLLMMIMGEL 88 (290)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 34578999999999999999998654
No 410
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=95.40 E-value=0.0097 Score=49.23 Aligned_cols=24 Identities=38% Similarity=0.475 Sum_probs=21.1
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHH
Q 022951 73 KHVQWVFLGCPGVGKGTYASRLSN 96 (289)
Q Consensus 73 ~~~~Ivl~GppGsGKSTlak~La~ 96 (289)
+..+|+|+|++|+||||+.++|..
T Consensus 24 ~~~ki~lvG~~~vGKSsLi~~l~~ 47 (198)
T 1f6b_A 24 KTGKLVFLGLDNAGKTTLLHMLKD 47 (198)
T ss_dssp CCEEEEEEEETTSSHHHHHHHHSC
T ss_pred CCcEEEEECCCCCCHHHHHHHHhc
Confidence 457899999999999999998853
No 411
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=95.40 E-value=0.013 Score=52.38 Aligned_cols=31 Identities=19% Similarity=0.080 Sum_probs=25.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhCC--Ceeeh
Q 022951 75 VQWVFLGCPGVGKGTYASRLSNLLGV--PHIAT 105 (289)
Q Consensus 75 ~~Ivl~GppGsGKSTlak~La~~lg~--~~i~~ 105 (289)
..++|.|++|+||||+++.+++..+. .+++.
T Consensus 31 ~~v~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~ 63 (357)
T 2fna_A 31 PITLVLGLRRTGKSSIIKIGINELNLPYIYLDL 63 (357)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHTCCEEEEEG
T ss_pred CcEEEECCCCCCHHHHHHHHHHhcCCCEEEEEc
Confidence 37899999999999999999988643 44554
No 412
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=95.40 E-value=0.0089 Score=48.35 Aligned_cols=23 Identities=35% Similarity=0.498 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHH
Q 022951 75 VQWVFLGCPGVGKGTYASRLSNL 97 (289)
Q Consensus 75 ~~Ivl~GppGsGKSTlak~La~~ 97 (289)
++|+|+|.+|+||||+..+|...
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~ 24 (190)
T 2cxx_A 2 ATIIFAGRSNVGKSTLIYRLTGK 24 (190)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHSC
T ss_pred cEEEEECCCCCCHHHHHHHHhCc
Confidence 47899999999999999998753
No 413
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=95.39 E-value=0.014 Score=50.35 Aligned_cols=26 Identities=19% Similarity=0.234 Sum_probs=22.3
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHHh
Q 022951 73 KHVQWVFLGCPGVGKGTYASRLSNLL 98 (289)
Q Consensus 73 ~~~~Ivl~GppGsGKSTlak~La~~l 98 (289)
..++|++.|+||+||||++-.++..+
T Consensus 5 g~l~I~~~~kgGvGKTt~a~~la~~l 30 (228)
T 2r8r_A 5 GRLKVFLGAAPGVGKTYAMLQAAHAQ 30 (228)
T ss_dssp CCEEEEEESSTTSSHHHHHHHHHHHH
T ss_pred ceEEEEEECCCCCcHHHHHHHHHHHH
Confidence 35789999999999999988887664
No 414
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=95.38 E-value=0.011 Score=53.74 Aligned_cols=26 Identities=31% Similarity=0.557 Sum_probs=23.0
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHHh
Q 022951 73 KHVQWVFLGCPGVGKGTYASRLSNLL 98 (289)
Q Consensus 73 ~~~~Ivl~GppGsGKSTlak~La~~l 98 (289)
+..+|+|+|+||+||||+...|+..+
T Consensus 55 ~~~~i~i~G~~g~GKSTl~~~l~~~~ 80 (341)
T 2p67_A 55 NTLRLGVTGTPGAGKSTFLEAFGMLL 80 (341)
T ss_dssp CSEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHHH
Confidence 46788999999999999999998765
No 415
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=95.38 E-value=0.012 Score=48.49 Aligned_cols=24 Identities=21% Similarity=0.422 Sum_probs=21.5
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHH
Q 022951 73 KHVQWVFLGCPGVGKGTYASRLSN 96 (289)
Q Consensus 73 ~~~~Ivl~GppGsGKSTlak~La~ 96 (289)
...+|+|+|.+|+||||+..+|..
T Consensus 7 ~~~ki~v~G~~~~GKSsli~~l~~ 30 (203)
T 1zbd_A 7 YMFKILIIGNSSVGKTSFLFRYAD 30 (203)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHT
T ss_pred eeeEEEEECCCCCCHHHHHHHHhc
Confidence 457899999999999999999864
No 416
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=95.36 E-value=0.011 Score=49.44 Aligned_cols=25 Identities=16% Similarity=0.169 Sum_probs=22.4
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHH
Q 022951 73 KHVQWVFLGCPGVGKGTYASRLSNL 97 (289)
Q Consensus 73 ~~~~Ivl~GppGsGKSTlak~La~~ 97 (289)
...+|+|+|.+|+||||+.++|...
T Consensus 27 ~~~ki~vvG~~~vGKSsLi~~l~~~ 51 (205)
T 1gwn_A 27 VKCKIVVVGDSQCGKTALLHVFAKD 51 (205)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred eeeEEEEECCCCCCHHHHHHHHhcC
Confidence 4689999999999999999999864
No 417
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=95.36 E-value=0.011 Score=56.90 Aligned_cols=27 Identities=37% Similarity=0.554 Sum_probs=22.5
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHHHh
Q 022951 72 GKHVQWVFLGCPGVGKGTYASRLSNLL 98 (289)
Q Consensus 72 ~~~~~Ivl~GppGsGKSTlak~La~~l 98 (289)
.++.+|+|+|++||||||++..|+..+
T Consensus 99 ~~~~vI~ivG~~GvGKTTl~~kLA~~l 125 (504)
T 2j37_W 99 GKQNVIMFVGLQGSGKTTTCSKLAYYY 125 (504)
T ss_dssp S--EEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 456789999999999999999999765
No 418
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=95.31 E-value=0.0057 Score=55.11 Aligned_cols=26 Identities=23% Similarity=0.286 Sum_probs=22.5
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHHh
Q 022951 73 KHVQWVFLGCPGVGKGTYASRLSNLL 98 (289)
Q Consensus 73 ~~~~Ivl~GppGsGKSTlak~La~~l 98 (289)
+.-++.|+||+||||||+.+.|+..+
T Consensus 79 ~Ge~vaivG~sGsGKSTLl~ll~gl~ 104 (306)
T 3nh6_A 79 PGQTLALVGPSGAGKSTILRLLFRFY 104 (306)
T ss_dssp TTCEEEEESSSCHHHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCchHHHHHHHHHcCC
Confidence 34578999999999999999998765
No 419
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=95.31 E-value=0.011 Score=51.19 Aligned_cols=26 Identities=15% Similarity=0.349 Sum_probs=22.1
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHHH
Q 022951 72 GKHVQWVFLGCPGVGKGTYASRLSNL 97 (289)
Q Consensus 72 ~~~~~Ivl~GppGsGKSTlak~La~~ 97 (289)
.+..+|+|+|.+|+||||+..+|...
T Consensus 20 ~~~~~I~lvG~~g~GKStl~n~l~~~ 45 (260)
T 2xtp_A 20 RSELRIILVGKTGTGKSAAGNSILRK 45 (260)
T ss_dssp -CCEEEEEEECTTSCHHHHHHHHHTS
T ss_pred CCceEEEEECCCCCCHHHHHHHHhCC
Confidence 35688999999999999999999753
No 420
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=95.30 E-value=0.011 Score=49.30 Aligned_cols=25 Identities=28% Similarity=0.408 Sum_probs=22.1
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHH
Q 022951 73 KHVQWVFLGCPGVGKGTYASRLSNL 97 (289)
Q Consensus 73 ~~~~Ivl~GppGsGKSTlak~La~~ 97 (289)
...+|+|+|.+|+||||+.++|...
T Consensus 25 ~~~ki~lvG~~~vGKSsLi~~l~~~ 49 (201)
T 2ew1_A 25 FLFKIVLIGNAGVGKTCLVRRFTQG 49 (201)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred cceEEEEECcCCCCHHHHHHHHHhC
Confidence 4578999999999999999998763
No 421
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=95.29 E-value=0.0084 Score=58.87 Aligned_cols=25 Identities=28% Similarity=0.559 Sum_probs=22.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhC
Q 022951 75 VQWVFLGCPGVGKGTYASRLSNLLG 99 (289)
Q Consensus 75 ~~Ivl~GppGsGKSTlak~La~~lg 99 (289)
..++|+||||+||||+++.|+..++
T Consensus 61 ~~vll~Gp~GtGKTtlar~ia~~l~ 85 (604)
T 3k1j_A 61 RHVLLIGEPGTGKSMLGQAMAELLP 85 (604)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHTSC
T ss_pred CEEEEEeCCCCCHHHHHHHHhccCC
Confidence 4689999999999999999999874
No 422
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=95.29 E-value=0.0087 Score=56.95 Aligned_cols=26 Identities=19% Similarity=0.281 Sum_probs=22.6
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHHh
Q 022951 73 KHVQWVFLGCPGVGKGTYASRLSNLL 98 (289)
Q Consensus 73 ~~~~Ivl~GppGsGKSTlak~La~~l 98 (289)
...++.|+||.||||||+++.|+..+
T Consensus 137 ~Ge~v~IvGpnGsGKSTLlr~L~Gl~ 162 (460)
T 2npi_A 137 EGPRVVIVGGSQTGKTSLSRTLCSYA 162 (460)
T ss_dssp SCCCEEEEESTTSSHHHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCcc
Confidence 34678999999999999999998864
No 423
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=95.29 E-value=0.011 Score=48.84 Aligned_cols=25 Identities=28% Similarity=0.430 Sum_probs=22.0
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHH
Q 022951 73 KHVQWVFLGCPGVGKGTYASRLSNL 97 (289)
Q Consensus 73 ~~~~Ivl~GppGsGKSTlak~La~~ 97 (289)
....|+|+|++|+||||+..+|...
T Consensus 7 ~~~ki~v~G~~~~GKSsli~~l~~~ 31 (206)
T 2bcg_Y 7 YLFKLLLIGNSGVGKSCLLLRFSDD 31 (206)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHC
T ss_pred cceEEEEECCCCCCHHHHHHHHhcC
Confidence 4578999999999999999999753
No 424
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=95.28 E-value=0.012 Score=48.61 Aligned_cols=26 Identities=19% Similarity=0.141 Sum_probs=22.7
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHHH
Q 022951 72 GKHVQWVFLGCPGVGKGTYASRLSNL 97 (289)
Q Consensus 72 ~~~~~Ivl~GppGsGKSTlak~La~~ 97 (289)
...++|+|+|.+|+||||+..+|...
T Consensus 23 ~~~~ki~vvG~~~~GKSsli~~l~~~ 48 (201)
T 2gco_A 23 AIRKKLVIVGDGACGKTCLLIVFSKD 48 (201)
T ss_dssp CEEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred ccceEEEEECCCCCCHHHHHHHHHhC
Confidence 35688999999999999999999763
No 425
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=95.27 E-value=0.0058 Score=55.56 Aligned_cols=25 Identities=24% Similarity=0.430 Sum_probs=22.2
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHHHh
Q 022951 74 HVQWVFLGCPGVGKGTYASRLSNLL 98 (289)
Q Consensus 74 ~~~Ivl~GppGsGKSTlak~La~~l 98 (289)
...++|+||+||||||+.+.|+..+
T Consensus 171 g~~v~i~G~~GsGKTTll~~l~g~~ 195 (330)
T 2pt7_A 171 GKNVIVCGGTGSGKTTYIKSIMEFI 195 (330)
T ss_dssp TCCEEEEESTTSCHHHHHHHGGGGS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3478999999999999999998766
No 426
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=95.25 E-value=0.01 Score=48.40 Aligned_cols=25 Identities=24% Similarity=0.218 Sum_probs=22.3
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHH
Q 022951 73 KHVQWVFLGCPGVGKGTYASRLSNL 97 (289)
Q Consensus 73 ~~~~Ivl~GppGsGKSTlak~La~~ 97 (289)
+...|+|+|.+|+||||+..+|...
T Consensus 17 ~~~ki~v~G~~~~GKssli~~l~~~ 41 (194)
T 2atx_A 17 LMLKCVVVGDGAVGKTCLLMSYAND 41 (194)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHS
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcC
Confidence 4578999999999999999999864
No 427
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=95.23 E-value=0.014 Score=48.08 Aligned_cols=25 Identities=32% Similarity=0.484 Sum_probs=22.1
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHH
Q 022951 73 KHVQWVFLGCPGVGKGTYASRLSNL 97 (289)
Q Consensus 73 ~~~~Ivl~GppGsGKSTlak~La~~ 97 (289)
...+|+|+|.+|+||||+..++...
T Consensus 5 ~~~kv~lvG~~~vGKSsL~~~~~~~ 29 (192)
T 2cjw_A 5 TYYRVVLIGEQGVGKSTLANIFAGV 29 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcC
Confidence 4578999999999999999999864
No 428
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=95.22 E-value=0.013 Score=48.59 Aligned_cols=25 Identities=24% Similarity=0.337 Sum_probs=22.1
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHH
Q 022951 72 GKHVQWVFLGCPGVGKGTYASRLSN 96 (289)
Q Consensus 72 ~~~~~Ivl~GppGsGKSTlak~La~ 96 (289)
....+|+|+|.+|+||||+..+|..
T Consensus 27 ~~~~ki~vvG~~~vGKSsli~~l~~ 51 (201)
T 2hup_A 27 DFLFKLVLVGDASVGKTCVVQRFKT 51 (201)
T ss_dssp CEEEEEEEEECTTSSHHHHHHHHHH
T ss_pred ccceEEEEECcCCCCHHHHHHHHhh
Confidence 3568999999999999999999865
No 429
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=95.22 E-value=0.01 Score=53.53 Aligned_cols=24 Identities=25% Similarity=0.248 Sum_probs=21.3
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHHH
Q 022951 74 HVQWVFLGCPGVGKGTYASRLSNL 97 (289)
Q Consensus 74 ~~~Ivl~GppGsGKSTlak~La~~ 97 (289)
..+++|+|+.||||||+.+.|...
T Consensus 4 i~v~~i~G~~GaGKTTll~~l~~~ 27 (318)
T 1nij_A 4 IAVTLLTGFLGAGKTTLLRHILNE 27 (318)
T ss_dssp EEEEEEEESSSSSCHHHHHHHHHS
T ss_pred ccEEEEEecCCCCHHHHHHHHHhh
Confidence 457889999999999999999864
No 430
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=95.21 E-value=0.012 Score=49.14 Aligned_cols=24 Identities=25% Similarity=0.436 Sum_probs=21.5
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHH
Q 022951 73 KHVQWVFLGCPGVGKGTYASRLSN 96 (289)
Q Consensus 73 ~~~~Ivl~GppGsGKSTlak~La~ 96 (289)
+..+|+|+|.+|+||||+..+|..
T Consensus 33 ~~~ki~vvG~~~vGKSsli~~l~~ 56 (214)
T 2j1l_A 33 RSVKVVLVGDGGCGKTSLLMVFAD 56 (214)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHC
T ss_pred ceEEEEEECcCCCCHHHHHHHHHc
Confidence 468899999999999999999864
No 431
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=95.20 E-value=0.011 Score=52.89 Aligned_cols=24 Identities=25% Similarity=0.236 Sum_probs=21.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHh
Q 022951 75 VQWVFLGCPGVGKGTYASRLSNLL 98 (289)
Q Consensus 75 ~~Ivl~GppGsGKSTlak~La~~l 98 (289)
..|+|+|+||+|||++|+.|++..
T Consensus 26 ~~vLi~Ge~GtGKt~lAr~i~~~~ 49 (304)
T 1ojl_A 26 ATVLIHGDSGTGKELVARALHACS 49 (304)
T ss_dssp SCEEEESCTTSCHHHHHHHHHHHS
T ss_pred CcEEEECCCCchHHHHHHHHHHhC
Confidence 347899999999999999999854
No 432
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=95.20 E-value=0.0061 Score=56.03 Aligned_cols=26 Identities=27% Similarity=0.414 Sum_probs=22.2
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHHh
Q 022951 73 KHVQWVFLGCPGVGKGTYASRLSNLL 98 (289)
Q Consensus 73 ~~~~Ivl~GppGsGKSTlak~La~~l 98 (289)
..-++.|.||+||||||+.+.|+..+
T Consensus 30 ~Ge~~~llGpnGsGKSTLLr~iaGl~ 55 (353)
T 1oxx_K 30 NGERFGILGPSGAGKTTFMRIIAGLD 55 (353)
T ss_dssp TTCEEEEECSCHHHHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 34578999999999999999998654
No 433
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=95.20 E-value=0.015 Score=52.01 Aligned_cols=26 Identities=31% Similarity=0.558 Sum_probs=22.9
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHHh
Q 022951 73 KHVQWVFLGCPGVGKGTYASRLSNLL 98 (289)
Q Consensus 73 ~~~~Ivl~GppGsGKSTlak~La~~l 98 (289)
++.+|.|+|++|+||||++..|+..+
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~~ 122 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALYY 122 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 56678888999999999999999876
No 434
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=95.18 E-value=0.01 Score=55.39 Aligned_cols=23 Identities=17% Similarity=0.094 Sum_probs=20.2
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHH
Q 022951 74 HVQWVFLGCPGVGKGTYASRLSN 96 (289)
Q Consensus 74 ~~~Ivl~GppGsGKSTlak~La~ 96 (289)
.-++.|+|+|||||||++..|+-
T Consensus 178 Gei~~I~G~sGsGKTTLl~~la~ 200 (400)
T 3lda_A 178 GSITELFGEFRTGKSQLCHTLAV 200 (400)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEEcCCCCChHHHHHHHHH
Confidence 45789999999999999998863
No 435
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=95.13 E-value=0.015 Score=49.43 Aligned_cols=23 Identities=26% Similarity=0.434 Sum_probs=19.9
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHH
Q 022951 74 HVQWVFLGCPGVGKGTYASRLSN 96 (289)
Q Consensus 74 ~~~Ivl~GppGsGKSTlak~La~ 96 (289)
.-+++|.|+||+|||++|..++.
T Consensus 30 G~l~~i~G~pG~GKT~l~l~~~~ 52 (251)
T 2zts_A 30 GTTVLLTGGTGTGKTTFAAQFIY 52 (251)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEEeCCCCCHHHHHHHHHH
Confidence 45789999999999999988754
No 436
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=95.13 E-value=0.012 Score=54.03 Aligned_cols=25 Identities=28% Similarity=0.473 Sum_probs=21.5
Q ss_pred ceEEEE--EcCCCCCHHHHHHHHHHHh
Q 022951 74 HVQWVF--LGCPGVGKGTYASRLSNLL 98 (289)
Q Consensus 74 ~~~Ivl--~GppGsGKSTlak~La~~l 98 (289)
+..++| .|++|+||||+++.+++.+
T Consensus 50 ~~~~li~i~G~~G~GKT~L~~~~~~~~ 76 (412)
T 1w5s_A 50 DVNMIYGSIGRVGIGKTTLAKFTVKRV 76 (412)
T ss_dssp CEEEEEECTTCCSSSHHHHHHHHHHHH
T ss_pred CCEEEEeCcCcCCCCHHHHHHHHHHHH
Confidence 456777 9999999999999998875
No 437
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=95.11 E-value=0.013 Score=48.69 Aligned_cols=25 Identities=20% Similarity=0.127 Sum_probs=22.0
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHH
Q 022951 73 KHVQWVFLGCPGVGKGTYASRLSNL 97 (289)
Q Consensus 73 ~~~~Ivl~GppGsGKSTlak~La~~ 97 (289)
...+|+|+|.+|+||||+..+|...
T Consensus 24 ~~~ki~vvG~~~~GKSsli~~l~~~ 48 (207)
T 2fv8_A 24 IRKKLVVVGDGACGKTCLLIVFSKD 48 (207)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHS
T ss_pred cCcEEEEECcCCCCHHHHHHHHhcC
Confidence 4578999999999999999999763
No 438
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=95.11 E-value=0.01 Score=60.55 Aligned_cols=24 Identities=42% Similarity=0.629 Sum_probs=22.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHh
Q 022951 75 VQWVFLGCPGVGKGTYASRLSNLL 98 (289)
Q Consensus 75 ~~Ivl~GppGsGKSTlak~La~~l 98 (289)
..++|+||||+|||++|+.|++.+
T Consensus 589 ~~vLl~Gp~GtGKT~lA~~la~~~ 612 (854)
T 1qvr_A 589 GSFLFLGPTGVGKTELAKTLAATL 612 (854)
T ss_dssp EEEEEBSCSSSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 478999999999999999999987
No 439
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=95.11 E-value=0.013 Score=53.94 Aligned_cols=27 Identities=22% Similarity=0.431 Sum_probs=22.9
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHHHh
Q 022951 72 GKHVQWVFLGCPGVGKGTYASRLSNLL 98 (289)
Q Consensus 72 ~~~~~Ivl~GppGsGKSTlak~La~~l 98 (289)
.+..+|+|.|.+||||||+++++.-.+
T Consensus 31 ~~~~killlG~~~SGKST~~kq~~i~~ 57 (362)
T 1zcb_A 31 ARLVKILLLGAGESGKSTFLKQMRIIH 57 (362)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred cCccEEEEECCCCCcHHHHHHHHHHHh
Confidence 456899999999999999999995444
No 440
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=95.10 E-value=0.015 Score=58.44 Aligned_cols=26 Identities=27% Similarity=0.369 Sum_probs=23.1
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHHh
Q 022951 73 KHVQWVFLGCPGVGKGTYASRLSNLL 98 (289)
Q Consensus 73 ~~~~Ivl~GppGsGKSTlak~La~~l 98 (289)
....++|+|+||+|||++++.|++.+
T Consensus 206 ~~~~vlL~G~~GtGKT~la~~la~~l 231 (758)
T 1r6b_X 206 RKNNPLLVGESGVGKTAIAEGLAWRI 231 (758)
T ss_dssp SSCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCCeEEEcCCCCCHHHHHHHHHHHH
Confidence 34568999999999999999999987
No 441
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=95.07 E-value=0.014 Score=53.42 Aligned_cols=33 Identities=18% Similarity=0.022 Sum_probs=25.8
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHHh-----CCCeeeh
Q 022951 73 KHVQWVFLGCPGVGKGTYASRLSNLL-----GVPHIAT 105 (289)
Q Consensus 73 ~~~~Ivl~GppGsGKSTlak~La~~l-----g~~~i~~ 105 (289)
+..++.|.|+|||||||++..++... .+.|++.
T Consensus 60 ~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~ 97 (349)
T 2zr9_A 60 RGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDA 97 (349)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEC
Confidence 34578999999999999999998653 3456664
No 442
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=95.05 E-value=0.011 Score=48.05 Aligned_cols=24 Identities=25% Similarity=0.454 Sum_probs=21.5
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHH
Q 022951 72 GKHVQWVFLGCPGVGKGTYASRLS 95 (289)
Q Consensus 72 ~~~~~Ivl~GppGsGKSTlak~La 95 (289)
.+..+|+|+|.+|+||||+..+|.
T Consensus 20 ~~~~~i~v~G~~~~GKssli~~l~ 43 (189)
T 2x77_A 20 DRKIRVLMLGLDNAGKTSILYRLH 43 (189)
T ss_dssp TSCEEEEEEEETTSSHHHHHHHTC
T ss_pred CCceEEEEECCCCCCHHHHHHHHH
Confidence 467899999999999999999884
No 443
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=95.03 E-value=0.016 Score=49.05 Aligned_cols=24 Identities=33% Similarity=0.479 Sum_probs=21.2
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHH
Q 022951 73 KHVQWVFLGCPGVGKGTYASRLSN 96 (289)
Q Consensus 73 ~~~~Ivl~GppGsGKSTlak~La~ 96 (289)
...+|+|+|.+|+||||+..++..
T Consensus 36 ~~~kVvlvG~~~vGKSSLl~r~~~ 59 (211)
T 2g3y_A 36 TYYRVVLIGEQGVGKSTLANIFAG 59 (211)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHC
T ss_pred CceEEEEECCCCCCHHHHHHHHHh
Confidence 457899999999999999998863
No 444
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=95.02 E-value=0.008 Score=48.47 Aligned_cols=24 Identities=29% Similarity=0.421 Sum_probs=11.6
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHH
Q 022951 73 KHVQWVFLGCPGVGKGTYASRLSN 96 (289)
Q Consensus 73 ~~~~Ivl~GppGsGKSTlak~La~ 96 (289)
...+|+|+|.+|+||||+..+|..
T Consensus 7 ~~~ki~v~G~~~~GKssl~~~l~~ 30 (183)
T 2fu5_C 7 YLFKLLLIGDSGVGKTCVLFRFSE 30 (183)
T ss_dssp EEEEEEEECCCCC-----------
T ss_pred CceEEEEECCCCCCHHHHHHHHHh
Confidence 457899999999999999998864
No 445
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=95.02 E-value=0.019 Score=47.99 Aligned_cols=27 Identities=30% Similarity=0.511 Sum_probs=22.3
Q ss_pred CCceEEEEEcCCCCCHHHHHHH-HHHHh
Q 022951 72 GKHVQWVFLGCPGVGKGTYASR-LSNLL 98 (289)
Q Consensus 72 ~~~~~Ivl~GppGsGKSTlak~-La~~l 98 (289)
...++|+|+|.+||||||+.++ +...+
T Consensus 13 ~~~~ki~v~G~~~~GKSsli~~~~~~~~ 40 (221)
T 3gj0_A 13 QVQFKLVLVGDGGTGKTTFVKRHLTGEF 40 (221)
T ss_dssp CCEEEEEEEECTTSSHHHHHTTBHHHHH
T ss_pred ccceEEEEECCCCCCHHHHHHHHHcCCC
Confidence 3568999999999999999998 54444
No 446
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=95.01 E-value=0.016 Score=48.71 Aligned_cols=26 Identities=31% Similarity=0.457 Sum_probs=22.5
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHHH
Q 022951 72 GKHVQWVFLGCPGVGKGTYASRLSNL 97 (289)
Q Consensus 72 ~~~~~Ivl~GppGsGKSTlak~La~~ 97 (289)
.....|+|+|.+|+||||+..+|...
T Consensus 11 ~~~~ki~v~G~~~vGKSsli~~l~~~ 36 (223)
T 3cpj_B 11 DLLFKIVLIGDSGVGKSNLLSRFTKN 36 (223)
T ss_dssp CEEEEEEEESCTTSSHHHHHHHHHHC
T ss_pred CeeeEEEEECcCCCCHHHHHHHHhcC
Confidence 34578999999999999999999753
No 447
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=95.00 E-value=0.016 Score=52.76 Aligned_cols=25 Identities=16% Similarity=0.004 Sum_probs=22.3
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHH
Q 022951 73 KHVQWVFLGCPGVGKGTYASRLSNL 97 (289)
Q Consensus 73 ~~~~Ivl~GppGsGKSTlak~La~~ 97 (289)
...++.|.|+|||||||+|..|+..
T Consensus 121 ~G~i~~I~G~~GsGKTtla~~la~~ 145 (343)
T 1v5w_A 121 SMAITEAFGEFRTGKTQLSHTLCVT 145 (343)
T ss_dssp SSEEEEEECCTTCTHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4568899999999999999999875
No 448
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=94.99 E-value=0.017 Score=48.42 Aligned_cols=25 Identities=20% Similarity=0.226 Sum_probs=21.8
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHH
Q 022951 73 KHVQWVFLGCPGVGKGTYASRLSNL 97 (289)
Q Consensus 73 ~~~~Ivl~GppGsGKSTlak~La~~ 97 (289)
..++|+|+|.+|+||||+..+|...
T Consensus 26 ~~~ki~vvG~~~vGKSsL~~~l~~~ 50 (214)
T 3q3j_B 26 ARCKLVLVGDVQCGKTAMLQVLAKD 50 (214)
T ss_dssp -CEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEEECcCCCCHHHHHHHHhcC
Confidence 4689999999999999999998763
No 449
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=94.99 E-value=0.018 Score=54.30 Aligned_cols=27 Identities=26% Similarity=0.382 Sum_probs=23.1
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHHHh
Q 022951 72 GKHVQWVFLGCPGVGKGTYASRLSNLL 98 (289)
Q Consensus 72 ~~~~~Ivl~GppGsGKSTlak~La~~l 98 (289)
.++.+|+|+|++|+||||++..||..+
T Consensus 98 ~~~~vI~ivG~~GvGKTT~a~~LA~~l 124 (433)
T 2xxa_A 98 QPPAVVLMAGLQGAGKTTSVGKLGKFL 124 (433)
T ss_dssp SSSEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 356788899999999999999998765
No 450
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=94.95 E-value=0.0097 Score=57.39 Aligned_cols=25 Identities=16% Similarity=0.240 Sum_probs=22.1
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHHHh
Q 022951 74 HVQWVFLGCPGVGKGTYASRLSNLL 98 (289)
Q Consensus 74 ~~~Ivl~GppGsGKSTlak~La~~l 98 (289)
+..++|+||+||||||+.+.|+..+
T Consensus 260 g~~i~I~GptGSGKTTlL~aL~~~i 284 (511)
T 2oap_1 260 KFSAIVVGETASGKTTTLNAIMMFI 284 (511)
T ss_dssp TCCEEEEESTTSSHHHHHHHHGGGS
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 4568999999999999999998765
No 451
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=94.95 E-value=0.014 Score=53.77 Aligned_cols=23 Identities=35% Similarity=0.485 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHH
Q 022951 75 VQWVFLGCPGVGKGTYASRLSNL 97 (289)
Q Consensus 75 ~~Ivl~GppGsGKSTlak~La~~ 97 (289)
.+++|+|++||||||+.+.|+..
T Consensus 216 ~~~~lvG~sG~GKSTLln~L~g~ 238 (358)
T 2rcn_A 216 RISIFAGQSGVGKSSLLNALLGL 238 (358)
T ss_dssp SEEEEECCTTSSHHHHHHHHHCC
T ss_pred CEEEEECCCCccHHHHHHHHhcc
Confidence 47899999999999999999743
No 452
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=94.95 E-value=0.013 Score=52.34 Aligned_cols=25 Identities=28% Similarity=0.446 Sum_probs=22.6
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHHHh
Q 022951 74 HVQWVFLGCPGVGKGTYASRLSNLL 98 (289)
Q Consensus 74 ~~~Ivl~GppGsGKSTlak~La~~l 98 (289)
+.+|+++|++|+||||++..|+..+
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~ 122 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFY 122 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 6788899999999999999999776
No 453
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=94.94 E-value=0.014 Score=52.16 Aligned_cols=24 Identities=33% Similarity=0.398 Sum_probs=21.2
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHHHh
Q 022951 74 HVQWVFLGCPGVGKGTYASRLSNLL 98 (289)
Q Consensus 74 ~~~Ivl~GppGsGKSTlak~La~~l 98 (289)
..+++|.|++||||||+.+.|+ .+
T Consensus 165 G~i~~l~G~sG~GKSTLln~l~-~~ 188 (302)
T 2yv5_A 165 GFICILAGPSGVGKSSILSRLT-GE 188 (302)
T ss_dssp TCEEEEECSTTSSHHHHHHHHH-SC
T ss_pred CcEEEEECCCCCCHHHHHHHHH-Hh
Confidence 3578999999999999999998 54
No 454
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=94.91 E-value=0.015 Score=50.70 Aligned_cols=24 Identities=33% Similarity=0.641 Sum_probs=21.6
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHH
Q 022951 73 KHVQWVFLGCPGVGKGTYASRLSN 96 (289)
Q Consensus 73 ~~~~Ivl~GppGsGKSTlak~La~ 96 (289)
+.+.|+|+|.|||||||+..+|..
T Consensus 4 ~~~kI~lvG~~nvGKTsL~n~l~g 27 (258)
T 3a1s_A 4 HMVKVALAGCPNVGKTSLFNALTG 27 (258)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHT
T ss_pred CceEEEEECCCCCCHHHHHHHHHC
Confidence 457899999999999999999975
No 455
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=94.88 E-value=0.017 Score=50.96 Aligned_cols=24 Identities=17% Similarity=0.344 Sum_probs=21.5
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHHH
Q 022951 74 HVQWVFLGCPGVGKGTYASRLSNL 97 (289)
Q Consensus 74 ~~~Ivl~GppGsGKSTlak~La~~ 97 (289)
..+|+|+|.|||||||+..+|...
T Consensus 3 ~~kI~lvG~~nvGKSTL~n~L~g~ 26 (272)
T 3b1v_A 3 MTEIALIGNPNSGKTSLFNLITGH 26 (272)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHCC
T ss_pred ceEEEEECCCCCCHHHHHHHHHCC
Confidence 468999999999999999999763
No 456
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=94.87 E-value=0.016 Score=54.35 Aligned_cols=24 Identities=21% Similarity=0.415 Sum_probs=21.3
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHHH
Q 022951 74 HVQWVFLGCPGVGKGTYASRLSNL 97 (289)
Q Consensus 74 ~~~Ivl~GppGsGKSTlak~La~~ 97 (289)
+.++.|+|++||||||+.+.|+..
T Consensus 69 ~~~valvG~nGaGKSTLln~L~Gl 92 (413)
T 1tq4_A 69 VLNVAVTGETGSGKSSFINTLRGI 92 (413)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHTC
T ss_pred CeEEEEECCCCCcHHHHHHHHhCC
Confidence 458999999999999999999863
No 457
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=94.80 E-value=0.015 Score=51.96 Aligned_cols=25 Identities=28% Similarity=0.399 Sum_probs=20.7
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHH
Q 022951 72 GKHVQWVFLGCPGVGKGTYASRLSN 96 (289)
Q Consensus 72 ~~~~~Ivl~GppGsGKSTlak~La~ 96 (289)
+-.+.|+|+|++|+||||+.+.|+.
T Consensus 16 ~~~~~I~lvG~nG~GKSTLl~~L~g 40 (301)
T 2qnr_A 16 GFEFTLMVVGESGLGKSTLINSLFL 40 (301)
T ss_dssp --CEEEEEEEETTSSHHHHHHHHHC
T ss_pred CCCEEEEEECCCCCCHHHHHHHHhC
Confidence 3457889999999999999999863
No 458
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=94.75 E-value=0.013 Score=52.25 Aligned_cols=23 Identities=22% Similarity=0.309 Sum_probs=20.2
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHH
Q 022951 74 HVQWVFLGCPGVGKGTYASRLSN 96 (289)
Q Consensus 74 ~~~Ivl~GppGsGKSTlak~La~ 96 (289)
..+++|.|++||||||+.+.|+.
T Consensus 169 geiv~l~G~sG~GKSTll~~l~g 191 (301)
T 1u0l_A 169 GKISTMAGLSGVGKSSLLNAINP 191 (301)
T ss_dssp SSEEEEECSTTSSHHHHHHHHST
T ss_pred CCeEEEECCCCCcHHHHHHHhcc
Confidence 35788999999999999999964
No 459
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=94.75 E-value=0.019 Score=51.73 Aligned_cols=25 Identities=28% Similarity=0.294 Sum_probs=22.1
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHHHh
Q 022951 74 HVQWVFLGCPGVGKGTYASRLSNLL 98 (289)
Q Consensus 74 ~~~Ivl~GppGsGKSTlak~La~~l 98 (289)
..+++|.|+|||||||+|..|+...
T Consensus 107 G~i~~i~G~~GsGKT~la~~la~~~ 131 (324)
T 2z43_A 107 RTMTEFFGEFGSGKTQLCHQLSVNV 131 (324)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CcEEEEECCCCCCHhHHHHHHHHHH
Confidence 4588999999999999999998753
No 460
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=94.71 E-value=0.021 Score=52.50 Aligned_cols=33 Identities=15% Similarity=0.044 Sum_probs=26.4
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHHh-----CCCeeeh
Q 022951 73 KHVQWVFLGCPGVGKGTYASRLSNLL-----GVPHIAT 105 (289)
Q Consensus 73 ~~~~Ivl~GppGsGKSTlak~La~~l-----g~~~i~~ 105 (289)
+..+++|.|+||+||||+|..|+... .+.+|++
T Consensus 62 ~G~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid~ 99 (356)
T 1u94_A 62 MGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDA 99 (356)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeC
Confidence 34578999999999999999988753 3566776
No 461
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=94.71 E-value=0.011 Score=49.53 Aligned_cols=26 Identities=27% Similarity=0.291 Sum_probs=22.4
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHHH
Q 022951 72 GKHVQWVFLGCPGVGKGTYASRLSNL 97 (289)
Q Consensus 72 ~~~~~Ivl~GppGsGKSTlak~La~~ 97 (289)
.....|+|+|.+|+||||+..+|...
T Consensus 27 ~~~~~i~v~G~~~~GKSslin~l~~~ 52 (223)
T 4dhe_A 27 TVQPEIAFAGRSNAGKSTAINVLCNQ 52 (223)
T ss_dssp CCSCEEEEEESCHHHHHHHHHHHTTC
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCC
Confidence 35678999999999999999998654
No 462
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=94.71 E-value=0.019 Score=54.28 Aligned_cols=23 Identities=22% Similarity=0.245 Sum_probs=21.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHh
Q 022951 76 QWVFLGCPGVGKGTYASRLSNLL 98 (289)
Q Consensus 76 ~Ivl~GppGsGKSTlak~La~~l 98 (289)
.++|.|+||+||||++..++..+
T Consensus 47 ~~li~G~aGTGKT~ll~~~~~~l 69 (459)
T 3upu_A 47 HVTINGPAGTGATTLTKFIIEAL 69 (459)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHHH
Confidence 78999999999999999998876
No 463
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=94.66 E-value=0.016 Score=54.54 Aligned_cols=23 Identities=30% Similarity=0.434 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHH
Q 022951 75 VQWVFLGCPGVGKGTYASRLSNL 97 (289)
Q Consensus 75 ~~Ivl~GppGsGKSTlak~La~~ 97 (289)
+.+.|+|++||||||+.+.|+..
T Consensus 43 ~~vaLvG~nGaGKSTLln~L~G~ 65 (427)
T 2qag_B 43 FNILCVGETGLGKSTLMDTLFNT 65 (427)
T ss_dssp EEEEEECSTTSSSHHHHHHHHTS
T ss_pred eEEEEECCCCCCHHHHHHHHhCc
Confidence 34899999999999999999764
No 464
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=94.66 E-value=0.019 Score=51.94 Aligned_cols=31 Identities=29% Similarity=0.328 Sum_probs=25.7
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHHHhCCCeeeh
Q 022951 74 HVQWVFLGCPGVGKGTYASRLSNLLGVPHIAT 105 (289)
Q Consensus 74 ~~~Ivl~GppGsGKSTlak~La~~lg~~~i~~ 105 (289)
..-++|.|++|+||||++..|.++ |..+++-
T Consensus 144 g~~vl~~G~sG~GKSt~a~~l~~~-g~~lv~d 174 (314)
T 1ko7_A 144 GVGVLITGDSGIGKSETALELIKR-GHRLVAD 174 (314)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHHT-TCEEEES
T ss_pred CEEEEEEeCCCCCHHHHHHHHHhc-CCceecC
Confidence 456899999999999999999875 7666654
No 465
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=94.65 E-value=0.018 Score=51.44 Aligned_cols=25 Identities=28% Similarity=0.314 Sum_probs=21.7
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHH
Q 022951 73 KHVQWVFLGCPGVGKGTYASRLSNL 97 (289)
Q Consensus 73 ~~~~Ivl~GppGsGKSTlak~La~~ 97 (289)
+..+|+|+|+||+||||+.++|...
T Consensus 7 r~~~VaIvG~~nvGKSTLln~L~g~ 31 (301)
T 1ega_A 7 YCGFIAIVGRPNVGKSTLLNKLLGQ 31 (301)
T ss_dssp EEEEEEEECSSSSSHHHHHHHHHTC
T ss_pred cCCEEEEECCCCCCHHHHHHHHHCC
Confidence 4568999999999999999999753
No 466
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=94.64 E-value=0.024 Score=53.39 Aligned_cols=26 Identities=31% Similarity=0.558 Sum_probs=23.3
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHHh
Q 022951 73 KHVQWVFLGCPGVGKGTYASRLSNLL 98 (289)
Q Consensus 73 ~~~~Ivl~GppGsGKSTlak~La~~l 98 (289)
++.+|+|+|++||||||++..|+..+
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~~l 122 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLALYY 122 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 56788889999999999999999876
No 467
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=94.63 E-value=0.022 Score=55.17 Aligned_cols=31 Identities=26% Similarity=0.190 Sum_probs=25.8
Q ss_pred CCCCCCceEEEEEcCCCCCHHHHHHHHHHHh
Q 022951 68 GKGEGKHVQWVFLGCPGVGKGTYASRLSNLL 98 (289)
Q Consensus 68 ~~~~~~~~~Ivl~GppGsGKSTlak~La~~l 98 (289)
.....+.-++.|+||.||||||+.+.|+..+
T Consensus 19 l~~~~~Gei~gLiGpNGaGKSTLlkiL~Gl~ 49 (538)
T 3ozx_A 19 LPTPKNNTILGVLGKNGVGKTTVLKILAGEI 49 (538)
T ss_dssp CCCCCTTEEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCCCCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 4455567789999999999999999998754
No 468
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=94.61 E-value=0.021 Score=51.18 Aligned_cols=25 Identities=20% Similarity=0.122 Sum_probs=21.9
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHH
Q 022951 73 KHVQWVFLGCPGVGKGTYASRLSNL 97 (289)
Q Consensus 73 ~~~~Ivl~GppGsGKSTlak~La~~ 97 (289)
...+++|.|+|||||||+|..++..
T Consensus 97 ~g~i~~i~G~~gsGKT~la~~la~~ 121 (322)
T 2i1q_A 97 SQSVTEFAGVFGSGKTQIMHQSCVN 121 (322)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3468899999999999999999864
No 469
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=94.55 E-value=0.022 Score=55.65 Aligned_cols=25 Identities=36% Similarity=0.554 Sum_probs=21.7
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHHHh
Q 022951 74 HVQWVFLGCPGVGKGTYASRLSNLL 98 (289)
Q Consensus 74 ~~~Ivl~GppGsGKSTlak~La~~l 98 (289)
...++|.|+||+||||++..|...+
T Consensus 204 ~~~~~I~G~pGTGKTt~i~~l~~~l 228 (574)
T 3e1s_A 204 HRLVVLTGGPGTGKSTTTKAVADLA 228 (574)
T ss_dssp CSEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 3578899999999999999998765
No 470
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=94.53 E-value=0.027 Score=50.64 Aligned_cols=26 Identities=15% Similarity=0.295 Sum_probs=22.3
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHHh
Q 022951 73 KHVQWVFLGCPGVGKGTYASRLSNLL 98 (289)
Q Consensus 73 ~~~~Ivl~GppGsGKSTlak~La~~l 98 (289)
+.-+++|.|+||+||||++..++...
T Consensus 67 ~G~l~li~G~pG~GKTtl~l~ia~~~ 92 (315)
T 3bh0_A 67 RRNFVLIAARPSMGKTAFALKQAKNM 92 (315)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence 34678999999999999999998654
No 471
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=94.47 E-value=0.024 Score=49.77 Aligned_cols=24 Identities=25% Similarity=0.404 Sum_probs=21.6
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHHH
Q 022951 74 HVQWVFLGCPGVGKGTYASRLSNL 97 (289)
Q Consensus 74 ~~~Ivl~GppGsGKSTlak~La~~ 97 (289)
++.|+|+|.+||||||+..+|...
T Consensus 3 ~~~I~lvG~~n~GKSTLin~l~g~ 26 (274)
T 3i8s_A 3 KLTIGLIGNPNSGKTTLFNQLTGS 26 (274)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHTT
T ss_pred ccEEEEECCCCCCHHHHHHHHhCC
Confidence 578999999999999999999754
No 472
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=94.46 E-value=0.024 Score=50.75 Aligned_cols=25 Identities=32% Similarity=0.340 Sum_probs=21.8
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHH
Q 022951 73 KHVQWVFLGCPGVGKGTYASRLSNL 97 (289)
Q Consensus 73 ~~~~Ivl~GppGsGKSTlak~La~~ 97 (289)
.+-+|+|+|.||+||||+..+|...
T Consensus 9 ~~g~v~ivG~~nvGKSTLin~l~g~ 33 (308)
T 3iev_A 9 KVGYVAIVGKPNVGKSTLLNNLLGT 33 (308)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHTS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCC
Confidence 4578999999999999999999753
No 473
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=94.43 E-value=0.01 Score=49.51 Aligned_cols=25 Identities=32% Similarity=0.503 Sum_probs=21.2
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHH
Q 022951 72 GKHVQWVFLGCPGVGKGTYASRLSN 96 (289)
Q Consensus 72 ~~~~~Ivl~GppGsGKSTlak~La~ 96 (289)
...++|+|+|.+|+||||+..+|..
T Consensus 9 ~~~~ki~vvG~~~~GKSsli~~l~~ 33 (218)
T 4djt_A 9 ELTYKICLIGDGGVGKTTYINRVLD 33 (218)
T ss_dssp -CEEEEEEECCTTSSHHHHHCBCTT
T ss_pred cCccEEEEECCCCCCHHHHHHHHhc
Confidence 3568999999999999999988863
No 474
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=94.43 E-value=0.0078 Score=59.12 Aligned_cols=27 Identities=19% Similarity=0.284 Sum_probs=23.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCe
Q 022951 76 QWVFLGCPGVGKGTYASRLSNLLGVPH 102 (289)
Q Consensus 76 ~Ivl~GppGsGKSTlak~La~~lg~~~ 102 (289)
.++|.||||+|||++|+.|++.++...
T Consensus 329 ~vLL~GppGtGKT~LAr~la~~~~r~~ 355 (595)
T 3f9v_A 329 HILIIGDPGTAKSQMLQFISRVAPRAV 355 (595)
T ss_dssp CEEEEESSCCTHHHHHHSSSTTCSCEE
T ss_pred ceEEECCCchHHHHHHHHHHHhCCCce
Confidence 689999999999999999998875433
No 475
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=94.40 E-value=0.023 Score=49.51 Aligned_cols=23 Identities=30% Similarity=0.498 Sum_probs=20.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHH
Q 022951 75 VQWVFLGCPGVGKGTYASRLSNL 97 (289)
Q Consensus 75 ~~Ivl~GppGsGKSTlak~La~~ 97 (289)
+.|+|+|.|||||||+...|...
T Consensus 2 ~kI~lvG~~n~GKSTL~n~L~g~ 24 (256)
T 3iby_A 2 THALLIGNPNCGKTTLFNALTNA 24 (256)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHHCC
Confidence 47899999999999999999754
No 476
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=94.39 E-value=0.0076 Score=49.51 Aligned_cols=25 Identities=20% Similarity=0.247 Sum_probs=6.6
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHH
Q 022951 73 KHVQWVFLGCPGVGKGTYASRLSNL 97 (289)
Q Consensus 73 ~~~~Ivl~GppGsGKSTlak~La~~ 97 (289)
....|+|+|.+|+||||+..+|...
T Consensus 19 ~~~~i~v~G~~~~GKssli~~l~~~ 43 (208)
T 2yc2_C 19 LRCKVAVVGEATVGKSALISMFTSK 43 (208)
T ss_dssp EEEEEEEC-----------------
T ss_pred cceEEEEECCCCCCHHHHHHHHHhC
Confidence 4578999999999999999988653
No 477
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=94.38 E-value=0.024 Score=54.55 Aligned_cols=22 Identities=18% Similarity=0.296 Sum_probs=19.3
Q ss_pred CceEEEEEcCCCCCHHHHHHHH
Q 022951 73 KHVQWVFLGCPGVGKGTYASRL 94 (289)
Q Consensus 73 ~~~~Ivl~GppGsGKSTlak~L 94 (289)
+.-+++|+|++||||||+++.+
T Consensus 38 ~Ge~~~l~G~nGsGKSTL~~~~ 59 (525)
T 1tf7_A 38 IGRSTLVSGTSGTGKTLFSIQF 59 (525)
T ss_dssp TTSEEEEEESTTSSHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHH
Confidence 3467899999999999999993
No 478
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=94.37 E-value=0.026 Score=54.03 Aligned_cols=24 Identities=25% Similarity=0.302 Sum_probs=21.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHh
Q 022951 75 VQWVFLGCPGVGKGTYASRLSNLL 98 (289)
Q Consensus 75 ~~Ivl~GppGsGKSTlak~La~~l 98 (289)
-++.|+||+||||||+.+.|+..+
T Consensus 30 e~~~liG~nGsGKSTLl~~l~Gl~ 53 (483)
T 3euj_A 30 LVTTLSGGNGAGKSTTMAGFVTAL 53 (483)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ceEEEECCCCCcHHHHHHHHhcCC
Confidence 578899999999999999999866
No 479
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=94.34 E-value=0.043 Score=46.76 Aligned_cols=26 Identities=19% Similarity=-0.070 Sum_probs=22.8
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHHh
Q 022951 73 KHVQWVFLGCPGVGKGTYASRLSNLL 98 (289)
Q Consensus 73 ~~~~Ivl~GppGsGKSTlak~La~~l 98 (289)
+..+.+++|++||||||.+-.++..+
T Consensus 27 ~G~l~vitG~MgsGKTT~lL~~a~r~ 52 (214)
T 2j9r_A 27 NGWIEVICGSMFSGKSEELIRRVRRT 52 (214)
T ss_dssp SCEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHH
Confidence 45788999999999999998888776
No 480
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=94.33 E-value=0.023 Score=55.11 Aligned_cols=26 Identities=27% Similarity=0.286 Sum_probs=22.6
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHHh
Q 022951 73 KHVQWVFLGCPGVGKGTYASRLSNLL 98 (289)
Q Consensus 73 ~~~~Ivl~GppGsGKSTlak~La~~l 98 (289)
..-++.|+|+.||||||+.+.|+..+
T Consensus 46 ~Ge~~~LvG~NGaGKSTLlk~l~Gl~ 71 (538)
T 1yqt_A 46 EGMVVGIVGPNGTGKSTAVKILAGQL 71 (538)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 45688999999999999999998654
No 481
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=94.26 E-value=0.027 Score=53.19 Aligned_cols=28 Identities=18% Similarity=0.312 Sum_probs=24.2
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHHHhC
Q 022951 72 GKHVQWVFLGCPGVGKGTYASRLSNLLG 99 (289)
Q Consensus 72 ~~~~~Ivl~GppGsGKSTlak~La~~lg 99 (289)
.+.-++.|.||+||||||+.+.|+..+.
T Consensus 155 ~~Gq~~~IvG~sGsGKSTLl~~Iag~~~ 182 (438)
T 2dpy_A 155 GRGQRMGLFAGSGVGKSVLLGMMARYTR 182 (438)
T ss_dssp BTTCEEEEEECTTSSHHHHHHHHHHHSC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcccC
Confidence 3456889999999999999999998774
No 482
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=94.21 E-value=0.032 Score=52.41 Aligned_cols=25 Identities=28% Similarity=0.448 Sum_probs=22.3
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHH
Q 022951 73 KHVQWVFLGCPGVGKGTYASRLSNL 97 (289)
Q Consensus 73 ~~~~Ivl~GppGsGKSTlak~La~~ 97 (289)
...+|+|+|+|||||||+.+.|...
T Consensus 179 ~~~kvaivG~~gvGKSTLln~l~g~ 203 (439)
T 1mky_A 179 DAIKVAIVGRPNVGKSTLFNAILNK 203 (439)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHTS
T ss_pred cCceEEEECCCCCCHHHHHHHHhCC
Confidence 4689999999999999999999754
No 483
>1knx_A Probable HPR(Ser) kinase/phosphatase; HPR kinase, HPR kinase/phosphatase, HPRK/P, P-loop, walker A BOX, catabolite repression; 2.50A {Mycoplasma pneumoniae} SCOP: c.98.2.1 c.91.1.2
Probab=94.19 E-value=0.022 Score=51.40 Aligned_cols=31 Identities=26% Similarity=0.308 Sum_probs=25.0
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHHHhCCCeeeh
Q 022951 74 HVQWVFLGCPGVGKGTYASRLSNLLGVPHIAT 105 (289)
Q Consensus 74 ~~~Ivl~GppGsGKSTlak~La~~lg~~~i~~ 105 (289)
..-++|+|++|+||||+|-.|.+ .|..+++-
T Consensus 147 g~gvli~G~sG~GKStlal~l~~-~G~~lv~D 177 (312)
T 1knx_A 147 GVGVLLTGRSGIGKSECALDLIN-KNHLFVGD 177 (312)
T ss_dssp TEEEEEEESSSSSHHHHHHHHHT-TTCEEEEE
T ss_pred CEEEEEEcCCCCCHHHHHHHHHH-cCCEEEeC
Confidence 35589999999999999999875 47666654
No 484
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=94.16 E-value=0.033 Score=52.58 Aligned_cols=26 Identities=19% Similarity=0.339 Sum_probs=22.0
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHHh
Q 022951 73 KHVQWVFLGCPGVGKGTYASRLSNLL 98 (289)
Q Consensus 73 ~~~~Ivl~GppGsGKSTlak~La~~l 98 (289)
+.-+++|.|+||+||||++..++...
T Consensus 202 ~G~liiI~G~pG~GKTtl~l~ia~~~ 227 (454)
T 2r6a_A 202 RSDLIIVAARPSVGKTAFALNIAQNV 227 (454)
T ss_dssp TTCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 34588999999999999999988753
No 485
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=93.21 E-value=0.0085 Score=49.51 Aligned_cols=26 Identities=23% Similarity=0.393 Sum_probs=22.4
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHHH
Q 022951 71 EGKHVQWVFLGCPGVGKGTYASRLSN 96 (289)
Q Consensus 71 ~~~~~~Ivl~GppGsGKSTlak~La~ 96 (289)
..+..+|+|+|.+|+||||+..+|..
T Consensus 27 ~~~~~ki~v~G~~~~GKSsli~~l~~ 52 (204)
T 3th5_A 27 QGQAIKCVVVGDGAVGKTCLLISYTT 52 (204)
Confidence 34678999999999999999988864
No 486
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=94.12 E-value=0.031 Score=51.12 Aligned_cols=27 Identities=22% Similarity=0.187 Sum_probs=23.9
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhC
Q 022951 73 KHVQWVFLGCPGVGKGTYASRLSNLLG 99 (289)
Q Consensus 73 ~~~~Ivl~GppGsGKSTlak~La~~lg 99 (289)
+.-++.|+|++||||||+.+.|+....
T Consensus 70 ~Gq~~gIiG~nGaGKTTLl~~I~g~~~ 96 (347)
T 2obl_A 70 IGQRIGIFAGSGVGKSTLLGMICNGAS 96 (347)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHHHHSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 456889999999999999999999874
No 487
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=94.12 E-value=0.024 Score=55.39 Aligned_cols=26 Identities=23% Similarity=0.373 Sum_probs=22.6
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHHh
Q 022951 73 KHVQWVFLGCPGVGKGTYASRLSNLL 98 (289)
Q Consensus 73 ~~~~Ivl~GppGsGKSTlak~La~~l 98 (289)
+.-++.|+||+||||||+.+.|+..+
T Consensus 368 ~G~~~~ivG~sGsGKSTll~~l~g~~ 393 (582)
T 3b5x_A 368 QGKTVALVGRSGSGKSTIANLFTRFY 393 (582)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34578999999999999999998765
No 488
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=94.10 E-value=0.032 Score=52.37 Aligned_cols=27 Identities=26% Similarity=0.358 Sum_probs=22.3
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHHHH
Q 022951 71 EGKHVQWVFLGCPGVGKGTYASRLSNL 97 (289)
Q Consensus 71 ~~~~~~Ivl~GppGsGKSTlak~La~~ 97 (289)
.+-.+.|+|+|++||||||+.+.|+..
T Consensus 28 ~~vsf~I~lvG~sGaGKSTLln~L~g~ 54 (418)
T 2qag_C 28 RGFEFTLMVVGESGLGKSTLINSLFLT 54 (418)
T ss_dssp -CCCEEEEEECCTTSSHHHHHHHHTTC
T ss_pred cCCCEEEEEECCCCCcHHHHHHHHhCC
Confidence 334577899999999999999999754
No 489
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=94.07 E-value=0.03 Score=49.05 Aligned_cols=23 Identities=26% Similarity=0.381 Sum_probs=20.4
Q ss_pred CceEEEEEcCCCCCHHHHHHHHH
Q 022951 73 KHVQWVFLGCPGVGKGTYASRLS 95 (289)
Q Consensus 73 ~~~~Ivl~GppGsGKSTlak~La 95 (289)
..+.|+|+|.+|+||||+...|.
T Consensus 7 ~~~~I~vvG~~g~GKSTLin~L~ 29 (274)
T 3t5d_A 7 FEFTLMVVGESGLGKSTLINSLF 29 (274)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHS
T ss_pred cEEEEEEECCCCCCHHHHHHHHh
Confidence 45789999999999999999874
No 490
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=94.05 E-value=0.023 Score=55.53 Aligned_cols=26 Identities=27% Similarity=0.376 Sum_probs=22.5
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHHh
Q 022951 73 KHVQWVFLGCPGVGKGTYASRLSNLL 98 (289)
Q Consensus 73 ~~~~Ivl~GppGsGKSTlak~La~~l 98 (289)
+.-++.|+||+||||||+.+.|+..+
T Consensus 368 ~G~~~~ivG~sGsGKSTLl~~l~g~~ 393 (582)
T 3b60_A 368 AGKTVALVGRSGSGKSTIASLITRFY 393 (582)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHTTTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhhcc
Confidence 34578999999999999999998765
No 491
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=93.91 E-value=0.037 Score=49.40 Aligned_cols=25 Identities=20% Similarity=0.294 Sum_probs=21.6
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHH
Q 022951 73 KHVQWVFLGCPGVGKGTYASRLSNL 97 (289)
Q Consensus 73 ~~~~Ivl~GppGsGKSTlak~La~~ 97 (289)
..++|+|+|.+|+||||+..+|...
T Consensus 2 ~~~KI~lvG~~~vGKSSLi~~l~~~ 26 (307)
T 3r7w_A 2 LGSKLLLMGRSGSGKSSMRSIIFSN 26 (307)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHSC
T ss_pred CceEEEEECCCCCCHHHHHHHHHhC
Confidence 3578999999999999999998654
No 492
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=93.90 E-value=0.042 Score=46.61 Aligned_cols=24 Identities=33% Similarity=0.565 Sum_probs=20.8
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHH
Q 022951 73 KHVQWVFLGCPGVGKGTYASRLSN 96 (289)
Q Consensus 73 ~~~~Ivl~GppGsGKSTlak~La~ 96 (289)
+..+|+|+|.+|+|||++..++..
T Consensus 12 k~~KivlvGd~~VGKTsLi~r~~~ 35 (216)
T 4dkx_A 12 RKFKLVFLGEQSVGKTSLITRFMY 35 (216)
T ss_dssp -CEEEEEECSTTSSHHHHHHHHHH
T ss_pred CcEEEEEECcCCcCHHHHHHHHHh
Confidence 347899999999999999998865
No 493
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=93.90 E-value=0.035 Score=53.48 Aligned_cols=25 Identities=24% Similarity=0.266 Sum_probs=21.9
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHHHh
Q 022951 74 HVQWVFLGCPGVGKGTYASRLSNLL 98 (289)
Q Consensus 74 ~~~Ivl~GppGsGKSTlak~La~~l 98 (289)
.-+++|.|++||||||+++.|+...
T Consensus 281 G~i~~i~G~~GsGKSTLl~~l~g~~ 305 (525)
T 1tf7_A 281 DSIILATGATGTGKTLLVSRFVENA 305 (525)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHH
Confidence 4578999999999999999998754
No 494
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=93.87 E-value=0.037 Score=51.51 Aligned_cols=24 Identities=25% Similarity=0.531 Sum_probs=22.0
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHH
Q 022951 73 KHVQWVFLGCPGVGKGTYASRLSN 96 (289)
Q Consensus 73 ~~~~Ivl~GppGsGKSTlak~La~ 96 (289)
...++.|+|+||+||||+.+.|..
T Consensus 19 ~g~~vgiVG~pnaGKSTL~n~Ltg 42 (392)
T 1ni3_A 19 NNLKTGIVGMPNVGKSTFFRAITK 42 (392)
T ss_dssp SCCEEEEEECSSSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHC
Confidence 457899999999999999999987
No 495
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=93.87 E-value=0.043 Score=43.69 Aligned_cols=25 Identities=20% Similarity=0.197 Sum_probs=20.9
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHHHh
Q 022951 74 HVQWVFLGCPGVGKGTYASRLSNLL 98 (289)
Q Consensus 74 ~~~Ivl~GppGsGKSTlak~La~~l 98 (289)
+.+.+|+||.||||||+...|.-.+
T Consensus 23 ~g~~~I~G~NGsGKStil~Ai~~~l 47 (149)
T 1f2t_A 23 EGINLIIGQNGSGKSSLLDAILVGL 47 (149)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHH
Confidence 3477899999999999999887544
No 496
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=93.84 E-value=0.081 Score=58.54 Aligned_cols=73 Identities=15% Similarity=0.135 Sum_probs=44.7
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHHh-----CCCeeehHHHHHH--HHHcC---------CccCHHHHHHHHHHHHHccc
Q 022951 73 KHVQWVFLGCPGVGKGTYASRLSNLL-----GVPHIATGDLLDE--IVSQG---------KLVSDEIIINLLSKRLEAGE 136 (289)
Q Consensus 73 ~~~~Ivl~GppGsGKSTlak~La~~l-----g~~~i~~d~l~~~--~l~~g---------~~v~~~~~~~ll~~~l~~~~ 136 (289)
++..++|+||||+|||++|..++..- .+.+++..+.+.. .-.-| ...+.+...+.+...+....
T Consensus 1426 ~g~~vll~GppGtGKT~LA~ala~ea~~~G~~v~Fi~~e~~~~~l~a~~~G~dl~~l~v~~~~~~E~~l~~~~~lvr~~~ 1505 (2050)
T 3cmu_A 1426 MGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSGA 1505 (2050)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCCCHHHHHHTTCCTTTCEEECCSSHHHHHHHHHHHHHHTC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEEcccccCHHHHHHcCCCchhceeecCChHHHHHHHHHHHHhcCC
Confidence 46789999999999999999997653 2457776533210 11113 12244445555555554444
Q ss_pred ccCCceEEEcCc
Q 022951 137 AKGEAGFILDGF 148 (289)
Q Consensus 137 ~~~~~g~Ildg~ 148 (289)
. +.+|+|.+
T Consensus 1506 ~---~lVVIDsi 1514 (2050)
T 3cmu_A 1506 V---DVIVVDSV 1514 (2050)
T ss_dssp C---SEEEESCG
T ss_pred C---CEEEEcCh
Confidence 3 48899963
No 497
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=93.84 E-value=0.013 Score=52.89 Aligned_cols=23 Identities=35% Similarity=0.492 Sum_probs=20.4
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHH
Q 022951 74 HVQWVFLGCPGVGKGTYASRLSN 96 (289)
Q Consensus 74 ~~~Ivl~GppGsGKSTlak~La~ 96 (289)
..+++|+|++||||||+.+.|+.
T Consensus 173 G~~~~lvG~sG~GKSTLln~L~g 195 (307)
T 1t9h_A 173 DKTTVFAGQSGVGKSSLLNAISP 195 (307)
T ss_dssp TSEEEEEESHHHHHHHHHHHHCC
T ss_pred CCEEEEECCCCCCHHHHHHHhcc
Confidence 45889999999999999999864
No 498
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=93.83 E-value=0.027 Score=54.55 Aligned_cols=25 Identities=32% Similarity=0.355 Sum_probs=21.8
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHHHh
Q 022951 74 HVQWVFLGCPGVGKGTYASRLSNLL 98 (289)
Q Consensus 74 ~~~Ivl~GppGsGKSTlak~La~~l 98 (289)
.-++.|+||.||||||+.+.|+..+
T Consensus 294 Gei~~i~G~nGsGKSTLl~~l~Gl~ 318 (538)
T 3ozx_A 294 GEIIGILGPNGIGKTTFARILVGEI 318 (538)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4578899999999999999998754
No 499
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=93.80 E-value=0.058 Score=46.68 Aligned_cols=25 Identities=20% Similarity=0.383 Sum_probs=22.4
Q ss_pred CCceEEEEEcCC---------CCCHHHHHHHHHH
Q 022951 72 GKHVQWVFLGCP---------GVGKGTYASRLSN 96 (289)
Q Consensus 72 ~~~~~Ivl~Gpp---------GsGKSTlak~La~ 96 (289)
....+|+|+|.+ |+||||+..+|..
T Consensus 17 ~~~~ki~lvG~~~~~~~~~~~~vGKSsLi~~l~~ 50 (255)
T 3c5h_A 17 QGTYNISVVGLSGTEKEKGQCGIGKSCLCNRFVR 50 (255)
T ss_dssp CSCEEEEEEESCCCTTTTTTCCCSHHHHHHHHHC
T ss_pred CceeEEEEECCCccccccCCCCcCHHHHHHHHHh
Confidence 356899999999 9999999999985
No 500
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=93.79 E-value=0.042 Score=47.88 Aligned_cols=24 Identities=21% Similarity=0.411 Sum_probs=21.4
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHH
Q 022951 73 KHVQWVFLGCPGVGKGTYASRLSN 96 (289)
Q Consensus 73 ~~~~Ivl~GppGsGKSTlak~La~ 96 (289)
..+.|+|+|.+|+||||+...|..
T Consensus 38 ~~~~I~vvG~~g~GKSSLin~l~~ 61 (270)
T 1h65_A 38 NSLTILVMGKGGVGKSSTVNSIIG 61 (270)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHhC
Confidence 357899999999999999999974
Done!