Your job contains 1 sequence.
>022952
MMDELKDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAAL
SVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQ
KKIMSANFDFNDFLKQTRTVARMGSMSRVIGMIPGMGKITPAQVREAEKSLKIMEAMIEA
MTPEEREKPELLAESPVRRKRVAQDSGKTEQQVSQLVAQLFQMRVRMKNLMGVMEGGSLP
ALSNLEDALKSEQKAPPGTARRKRRSESRRQFVDPASTRPSPRGFGGGS
The BLAST search returned 1 gene product which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 022952
(289 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2150620 - symbol:CPSRP54 "chloroplast signal r... 1238 4.8e-126 1
TIGR_CMR|CHY_1434 - symbol:CHY_1434 "signal recognition p... 647 2.0e-63 1
UNIPROTKB|Q97QD2 - symbol:ffh "Signal recognition particl... 561 2.3e-56 2
TIGR_CMR|BA_3983 - symbol:BA_3983 "signal recognition par... 570 2.9e-55 1
UNIPROTKB|P0AGD7 - symbol:ffh species:83333 "Escherichia ... 546 1.0e-52 1
TIGR_CMR|GSU_0642 - symbol:GSU_0642 "signal recognition p... 541 3.5e-52 1
TIGR_CMR|CBU_0450 - symbol:CBU_0450 "signal recognition p... 537 9.2e-52 1
TIGR_CMR|SPO_3246 - symbol:SPO_3246 "signal recognition p... 537 9.2e-52 1
TIGR_CMR|SO_1356 - symbol:SO_1356 "signal recognition par... 529 6.5e-51 1
TIGR_CMR|VC_0560 - symbol:VC_0560 "signal recognition par... 527 1.1e-50 1
NCBI_NP|NP_355632.2 - symbol:ffh "signal recognition part... 494 2.3e-50 2
UNIPROTKB|P66844 - symbol:ffh "Signal recognition particl... 523 2.8e-50 1
UNIPROTKB|O07347 - symbol:ffh "Signal recognition particl... 521 4.6e-50 1
TIGR_CMR|CPS_4073 - symbol:CPS_4073 "signal recognition p... 516 1.5e-49 1
TIGR_CMR|ECH_0475 - symbol:ECH_0475 "signal recognition p... 485 3.0e-46 1
TIGR_CMR|CJE_0809 - symbol:CJE_0809 "signal recognition p... 472 7.1e-45 1
TIGR_CMR|APH_0349 - symbol:APH_0349 "signal recognition p... 454 5.7e-43 1
TIGR_CMR|NSE_0540 - symbol:NSE_0540 "signal recognition p... 417 4.8e-39 1
SGD|S000006292 - symbol:SRP54 "Signal recognition particl... 363 1.9e-35 2
ZFIN|ZDB-GENE-040426-818 - symbol:srp54 "signal recogniti... 353 2.9e-32 1
UNIPROTKB|E1C6G6 - symbol:SRP54 "Uncharacterized protein"... 351 4.7e-32 1
RGD|2323636 - symbol:Fam177a1 "family with sequence simil... 351 4.7e-32 1
RGD|621390 - symbol:Srp54 "signal recognition particle 54... 351 4.7e-32 1
UNIPROTKB|Q2T9U1 - symbol:SRP54 "Signal recognition parti... 350 6.0e-32 1
UNIPROTKB|P61010 - symbol:SRP54 "Signal recognition parti... 350 6.0e-32 1
UNIPROTKB|G3V4F7 - symbol:SRP54 "Signal recognition parti... 350 6.0e-32 1
UNIPROTKB|P61011 - symbol:SRP54 "Signal recognition parti... 350 6.0e-32 1
UNIPROTKB|F2Z5M9 - symbol:SRP54 "Uncharacterized protein"... 350 6.0e-32 1
UNIPROTKB|Q4R965 - symbol:SRP54 "Signal recognition parti... 350 6.0e-32 1
UNIPROTKB|Q5R4R6 - symbol:SRP54 "Signal recognition parti... 350 6.0e-32 1
WB|WBGene00009012 - symbol:F21D5.7 species:6239 "Caenorha... 345 2.0e-31 1
FB|FBgn0010747 - symbol:Srp54k "Signal recognition partic... 346 4.7e-31 1
TAIR|locus:2028563 - symbol:AT1G48900 species:3702 "Arabi... 330 1.1e-29 1
GENEDB_PFALCIPARUM|PF14_0477 - symbol:PF14_0477 "signal r... 315 6.7e-28 1
UNIPROTKB|Q8IKX4 - symbol:PF14_0477 "Signal recognition p... 315 6.7e-28 1
TAIR|locus:2157809 - symbol:AT5G49500 "AT5G49500" species... 308 4.0e-27 1
POMBASE|SPCC188.06c - symbol:srp54 "signal recognition pa... 306 8.9e-27 1
DICTYBASE|DDB_G0275455 - symbol:srp54 "signal recognition... 306 1.1e-26 1
CGD|CAL0003314 - symbol:SRP54 species:5476 "Candida albic... 303 2.5e-26 1
TAIR|locus:2037803 - symbol:ATHSRP54A "signal recognition... 270 6.1e-23 1
TIGR_CMR|CHY_1442 - symbol:CHY_1442 "signal recognition p... 213 2.0e-17 1
UNIPROTKB|P10121 - symbol:ftsY "SRP receptor" species:833... 204 2.3e-15 1
TIGR_CMR|BA_3985 - symbol:BA_3985 "signal recognition par... 202 2.4e-15 1
UNIPROTKB|P66842 - symbol:ftsY "Signal recognition partic... 201 9.9e-15 1
UNIPROTKB|P83749 - symbol:ftsY "Signal recognition partic... 192 7.7e-14 1
TIGR_CMR|CBU_1903 - symbol:CBU_1903 "signal recognition p... 190 2.3e-13 1
TIGR_CMR|SPO_1339 - symbol:SPO_1339 "signal recognition p... 184 2.9e-12 1
TIGR_CMR|NSE_0545 - symbol:NSE_0545 "signal recognition p... 177 1.0e-11 1
TIGR_CMR|CPS_0157 - symbol:CPS_0157 "signal recognition p... 178 2.7e-11 1
UNIPROTKB|Q97QH0 - symbol:ftsY "Signal recognition partic... 168 3.6e-10 1
TIGR_CMR|GSU_1132 - symbol:GSU_1132 "signal recognition p... 164 6.6e-10 1
TIGR_CMR|SO_4586 - symbol:SO_4586 "signal recognition par... 165 1.1e-09 1
TIGR_CMR|VC_0147 - symbol:VC_0147 "signal recognition par... 163 1.2e-09 1
TIGR_CMR|ECH_1111 - symbol:ECH_1111 "signal recognition p... 159 1.9e-09 1
TIGR_CMR|APH_1227 - symbol:APH_1227 "signal recognition p... 153 9.3e-09 1
TIGR_CMR|CJE_1340 - symbol:CJE_1340 "signal recognition p... 129 5.6e-06 1
FB|FBgn0010391 - symbol:Gtp-bp "GTP-binding protein" spec... 118 0.00037 1
>TAIR|locus:2150620 [details] [associations]
symbol:CPSRP54 "chloroplast signal recognition particle
54 kDa subunit" species:3702 "Arabidopsis thaliana" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003729 "mRNA binding"
evidence=ISS] [GO:0005048 "signal sequence binding" evidence=IDA]
[GO:0005525 "GTP binding" evidence=IEA;ISS] [GO:0005737 "cytoplasm"
evidence=ISM] [GO:0005786 "signal recognition particle, endoplasmic
reticulum targeting" evidence=ISS] [GO:0006614 "SRP-dependent
cotranslational protein targeting to membrane" evidence=IEA]
[GO:0006617 "SRP-dependent cotranslational protein targeting to
membrane, signal sequence recognition" evidence=ISS] [GO:0008312
"7S RNA binding" evidence=IEA;ISS] [GO:0009570 "chloroplast stroma"
evidence=IDA] [GO:0017111 "nucleoside-triphosphatase activity"
evidence=IEA] [GO:0045038 "protein import into chloroplast
thylakoid membrane" evidence=IDA] [GO:0048500 "signal recognition
particle" evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0080085 "signal recognition particle, chloroplast targeting"
evidence=IMP] [GO:0009507 "chloroplast" evidence=IDA] [GO:0010267
"production of ta-siRNAs involved in RNA interference"
evidence=RCA] [GO:0019288 "isopentenyl diphosphate biosynthetic
process, mevalonate-independent pathway" evidence=RCA] [GO:0035196
"production of miRNAs involved in gene silencing by miRNA"
evidence=RCA] [GO:0051607 "defense response to virus" evidence=RCA]
InterPro:IPR000897 InterPro:IPR003593 InterPro:IPR004125
InterPro:IPR004780 InterPro:IPR013822 InterPro:IPR022941
Pfam:PF00448 Pfam:PF02881 Pfam:PF02978 PROSITE:PS00300
SMART:SM00382 SMART:SM00962 SMART:SM00963 GO:GO:0005525
EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0009570 GO:GO:0003924
GO:GO:0006184 EMBL:AL162873 GO:GO:0008312 GO:GO:0006614
SUPFAM:SSF47364 GO:GO:0005786 PDB:2HUG PDB:3UI2 PDBsum:2HUG
PDBsum:3UI2 TCDB:3.A.5.1.2 GO:GO:0080085 eggNOG:COG0541 KO:K03106
Gene3D:1.10.260.30 SUPFAM:SSF47446 EMBL:Z21970 EMBL:AF092168
EMBL:AY050999 EMBL:BT000976 IPI:IPI00538977 PIR:S36637
RefSeq:NP_196014.1 UniGene:At.435 ProteinModelPortal:P37107
SMR:P37107 DIP:DIP-752N IntAct:P37107 MINT:MINT-126488
STRING:P37107 PaxDb:P37107 PRIDE:P37107 ProMEX:P37107
EnsemblPlants:AT5G03940.1 GeneID:830273 KEGG:ath:AT5G03940
GeneFarm:1888 TAIR:At5g03940 HOGENOM:HOG000036164 InParanoid:P37107
OMA:DSGKTEQ PhylomeDB:P37107 ProtClustDB:CLSN2686225
EvolutionaryTrace:P37107 Genevestigator:P37107 GermOnline:AT5G03940
PANTHER:PTHR11564:SF7 TIGRFAMs:TIGR00959 Uniprot:P37107
Length = 564
Score = 1238 (440.9 bits), Expect = 4.8e-126, P = 4.8e-126
Identities = 242/289 (83%), Positives = 267/289 (92%)
Query: 1 MMDELKDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAAL 60
MMDELKDVK+ LNPTEVLLVVDAMTGQEAAALVTTFN+EIGITGAILTKLDGDSRGGAAL
Sbjct: 276 MMDELKDVKKFLNPTEVLLVVDAMTGQEAAALVTTFNVEIGITGAILTKLDGDSRGGAAL 335
Query: 61 SVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQ 120
SVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKA EVM+QEDAE++Q
Sbjct: 336 SVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKATEVMRQEDAEDLQ 395
Query: 121 KKIMSANFDFNDFLKQTRTVARMGSMSRVIGMIPGMGKITPAQVREAEKSLKIMEAMIEA 180
KKIMSA FDFNDFLKQTR VA+MGSM+RV+GMIPGMGK++PAQ+REAEK+L +MEAMIE
Sbjct: 396 KKIMSAKFDFNDFLKQTRAVAKMGSMTRVLGMIPGMGKVSPAQIREAEKNLLVMEAMIEV 455
Query: 181 MTPEEREKPELLAESPVRRKRVAQDSGKTEQQVSQLVAQLFQMRVRMKNLMGVMEGGSLP 240
MTPEERE+PELLAESP RRKR+A+DSGKTEQQVS LVAQ+FQMRV+MKNLMGVMEGGS+P
Sbjct: 456 MTPEERERPELLAESPERRKRIAKDSGKTEQQVSALVAQIFQMRVKMKNLMGVMEGGSIP 515
Query: 241 ALSNLEDALKSEQKAPPGTAXXXXXXXXXXQFVDPASTRPSPRGFGGGS 289
ALS LEDALK+EQKAPPGTA +FV+ AS++P PRGFG G+
Sbjct: 516 ALSGLEDALKAEQKAPPGTARRKRKADSRKKFVESASSKPGPRGFGSGN 564
>TIGR_CMR|CHY_1434 [details] [associations]
symbol:CHY_1434 "signal recognition particle protein"
species:246194 "Carboxydothermus hydrogenoformans Z-2901"
[GO:0003924 "GTPase activity" evidence=ISS] [GO:0005048 "signal
sequence binding" evidence=ISS] [GO:0009306 "protein secretion"
evidence=ISS] [GO:0048501 "signal recognition particle, plasma
membrane targeting" evidence=ISS] HAMAP:MF_00306 InterPro:IPR000897
InterPro:IPR003593 InterPro:IPR004125 InterPro:IPR004780
InterPro:IPR013822 InterPro:IPR022941 Pfam:PF00448 Pfam:PF02881
Pfam:PF02978 PROSITE:PS00300 SMART:SM00382 SMART:SM00962
SMART:SM00963 GO:GO:0005525 EMBL:CP000141 GenomeReviews:CP000141_GR
GO:GO:0003924 GO:GO:0006184 GO:GO:0008312 GO:GO:0006614
SUPFAM:SSF47364 GO:GO:0005786 eggNOG:COG0541 HOGENOM:HOG000036165
KO:K03106 Gene3D:1.10.260.30 SUPFAM:SSF47446 PANTHER:PTHR11564:SF7
TIGRFAMs:TIGR00959 OMA:GQQVVKI RefSeq:YP_360266.1
ProteinModelPortal:Q3AC68 SMR:Q3AC68 STRING:Q3AC68 GeneID:3728502
KEGG:chy:CHY_1434 PATRIC:21275999
BioCyc:CHYD246194:GJCN-1433-MONOMER Uniprot:Q3AC68
Length = 446
Score = 647 (232.8 bits), Expect = 2.0e-63, P = 2.0e-63
Identities = 127/233 (54%), Positives = 174/233 (74%)
Query: 1 MMDELKDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAAL 60
+MDELK +K V++P E+LLVVDAMTGQ+A + +FN E+G+TG ILTKLDGD++GGAAL
Sbjct: 200 LMDELKKIKDVVHPHEILLVVDAMTGQDAVNVAKSFNDELGLTGVILTKLDGDTKGGAAL 259
Query: 61 SVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQ 120
SVK V+G PIK G GE++E+LEPFYPDRMA RILGMGDVL+ +EKA+E + E A++MQ
Sbjct: 260 SVKAVTGCPIKFAGMGEKIENLEPFYPDRMASRILGMGDVLTLIEKAKEALDAEKAQKMQ 319
Query: 121 KKIMSANFDFNDFLKQTRTVARMGSMSRVIGMIPGMGKITPAQVREAEKSLKIMEAMIEA 180
+K+ S FD DFL + + +MG + +++GMIPGMGK+ EK LK +EA+I +
Sbjct: 320 EKLKSREFDLEDFLDSMQQIKKMGPLEQLLGMIPGMGKVKDIAGMVDEKELKHIEAIIYS 379
Query: 181 MTPEEREKPELLAESPVRRKRVAQDSGKTEQQVSQLVAQLFQMRVRMKNLMGV 233
MTPEER KPE++ S R+KR+A+ SG + Q+V++L+ Q QM+ MK G+
Sbjct: 380 MTPEERRKPEIIDGS--RKKRIAKGSGTSIQEVNRLLKQFEQMKKLMKQFGGM 430
>UNIPROTKB|Q97QD2 [details] [associations]
symbol:ffh "Signal recognition particle protein"
species:170187 "Streptococcus pneumoniae TIGR4" [GO:0005515
"protein binding" evidence=IPI] HAMAP:MF_00306 InterPro:IPR000897
InterPro:IPR003593 InterPro:IPR004125 InterPro:IPR004780
InterPro:IPR013822 InterPro:IPR022941 Pfam:PF00448 Pfam:PF02881
Pfam:PF02978 PROSITE:PS00300 SMART:SM00382 SMART:SM00962
SMART:SM00963 GO:GO:0005525 GO:GO:0003924 GO:GO:0006184
EMBL:AE005672 GenomeReviews:AE005672_GR GO:GO:0008312 GO:GO:0006614
SUPFAM:SSF47364 GO:GO:0005786 KO:K03106 Gene3D:1.10.260.30
SUPFAM:SSF47446 HOGENOM:HOG000036164 PANTHER:PTHR11564:SF7
TIGRFAMs:TIGR00959 OMA:GQQVVKI ProtClustDB:PRK10867 HSSP:O07347
PIR:F95149 RefSeq:NP_345751.1 ProteinModelPortal:Q97QD2
EnsemblBacteria:EBSTRT00000025249 GeneID:931801 KEGG:spn:SP_1287
PATRIC:19706973 Uniprot:Q97QD2
Length = 523
Score = 561 (202.5 bits), Expect = 2.3e-56, Sum P(2) = 2.3e-56
Identities = 114/238 (47%), Positives = 161/238 (67%)
Query: 1 MMDELKDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAAL 60
+M+EL+DVK + P E+LLVVDAM GQEAA + FN ++ +TG ILTK+DGD+RGGAAL
Sbjct: 202 LMNELRDVKALAQPNEILLVVDAMIGQEAANVAREFNAQLEVTGVILTKIDGDTRGGAAL 261
Query: 61 SVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQ 120
SV+ ++GKPIK G GE++ D+E F+PDRM+ RILGMGD+L+ +EKA + ++ A EM
Sbjct: 262 SVRHITGKPIKFTGTGEKITDIETFHPDRMSSRILGMGDMLTLIEKASQEYDEQKALEMA 321
Query: 121 KKIMSANFDFNDFLKQTRTVARMGSMSRVIGMIPGMGKITPA--QVREAEKSLKIMEAMI 178
+K+ FDFNDF+ Q V MG M ++ MIPGM PA ++ E+ + A++
Sbjct: 322 EKMRENTFDFNDFIDQLDQVQNMGPMEDLLKMIPGMAN-NPALQNMKVDERQIARKRAIV 380
Query: 179 EAMTPEEREKPELLAESPVRRKRVAQDSGKTEQQVSQLVAQLFQMRVRMKNLMGVMEG 236
+MTPEERE P+LL +P RR+R+A SG T +V++ + Q + M+ GVM G
Sbjct: 381 SSMTPEERENPDLL--NPSRRRRIAAGSGNTFVEVNKFIKDFNQAKQLMQ---GVMSG 433
Score = 37 (18.1 bits), Expect = 2.3e-56, Sum P(2) = 2.3e-56
Identities = 10/22 (45%), Positives = 12/22 (54%)
Query: 227 MKNLMGVMEGGSLPALSNLEDA 248
M L G+M G +P LS L A
Sbjct: 461 MSALEGMMGQGGMPDLSALGGA 482
>TIGR_CMR|BA_3983 [details] [associations]
symbol:BA_3983 "signal recognition particle protein"
species:198094 "Bacillus anthracis str. Ames" [GO:0003924 "GTPase
activity" evidence=ISS] [GO:0005048 "signal sequence binding"
evidence=ISS] [GO:0009306 "protein secretion" evidence=ISS]
[GO:0048501 "signal recognition particle, plasma membrane
targeting" evidence=ISS] HAMAP:MF_00306 InterPro:IPR000897
InterPro:IPR003593 InterPro:IPR004125 InterPro:IPR004780
InterPro:IPR013822 InterPro:IPR022941 Pfam:PF00448 Pfam:PF02881
Pfam:PF02978 PROSITE:PS00300 SMART:SM00382 SMART:SM00962
SMART:SM00963 GO:GO:0005525 EMBL:AE016879 EMBL:AE017334
EMBL:AE017225 GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
GenomeReviews:AE017334_GR GO:GO:0003924 GO:GO:0006184 GO:GO:0008312
GO:GO:0006614 SUPFAM:SSF47364 GO:GO:0005786 KO:K03106
Gene3D:1.10.260.30 SUPFAM:SSF47446 HOGENOM:HOG000036164
PANTHER:PTHR11564:SF7 TIGRFAMs:TIGR00959 OMA:GQQVVKI
ProtClustDB:PRK10867 RefSeq:NP_846225.1 RefSeq:YP_020622.1
RefSeq:YP_029947.1 HSSP:O07347 ProteinModelPortal:Q81WJ2 SMR:Q81WJ2
EnsemblBacteria:EBBACT00000009811 EnsemblBacteria:EBBACT00000016655
EnsemblBacteria:EBBACT00000023730 GeneID:1087538 GeneID:2820002
GeneID:2848277 KEGG:ban:BA_3983 KEGG:bar:GBAA_3983 KEGG:bat:BAS3696
BioCyc:BANT260799:GJAJ-3754-MONOMER
BioCyc:BANT261594:GJ7F-3871-MONOMER Uniprot:Q81WJ2
Length = 449
Score = 570 (205.7 bits), Expect = 2.9e-55, P = 2.9e-55
Identities = 110/237 (46%), Positives = 168/237 (70%)
Query: 1 MMDELKDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAAL 60
+MDEL VK V P E+ LVVDAMTGQ+A + +F+ ++G+TG +LTKLDGD+RGGAAL
Sbjct: 202 LMDELAKVKEVAKPDEIFLVVDAMTGQDAVNVAQSFHEQLGLTGVVLTKLDGDTRGGAAL 261
Query: 61 SVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQ 120
S+K V+ PIK G GE+++ LE F+P+RMA RILGMGDVL+ +EKAQ + +E A+E++
Sbjct: 262 SIKAVTNTPIKFAGMGEKLDALEAFHPERMASRILGMGDVLTLIEKAQATVDEEKAKELE 321
Query: 121 KKIMSANFDFNDFLKQTRTVARMGSMSRVIGMIPGMGKITPAQVREA-EKSLKIMEAMIE 179
+K+ + +F +DFL+Q V ++G + ++GM+PG KI + + EK + +EA+I
Sbjct: 322 QKMRTLSFTLDDFLEQLGQVRQLGPLDELLGMLPGANKIKGLKNAQVDEKQIGHIEAIIR 381
Query: 180 AMTPEEREKPELLAESPVRRKRVAQDSGKTEQQVSQLVAQLFQMRVRMKNLMGVMEG 236
+MT ERE+PE++ S R+KR+A+ SG T Q++++L+ Q M+ MK + G+ +G
Sbjct: 382 SMTKLEREQPEIINAS--RKKRIAKGSGTTVQEINRLIKQFDDMKKMMKTMTGMQKG 436
>UNIPROTKB|P0AGD7 [details] [associations]
symbol:ffh species:83333 "Escherichia coli K-12"
[GO:0048500 "signal recognition particle" evidence=IEA;IMP]
[GO:0005525 "GTP binding" evidence=IEA;ISS;IMP;IDA] [GO:0006612
"protein targeting to membrane" evidence=IMP] [GO:0030529
"ribonucleoprotein complex" evidence=IDA] [GO:0003924 "GTPase
activity" evidence=IEA;ISS;IMP;IDA] [GO:0008312 "7S RNA binding"
evidence=IEA] [GO:0006614 "SRP-dependent cotranslational protein
targeting to membrane" evidence=IEA] [GO:0005786 "signal
recognition particle, endoplasmic reticulum targeting"
evidence=IEA] [GO:0006184 "GTP catabolic process" evidence=IEA;IMP]
[GO:0003723 "RNA binding" evidence=IEA] HAMAP:MF_00306
InterPro:IPR000897 InterPro:IPR003593 InterPro:IPR004125
InterPro:IPR004780 InterPro:IPR013822 InterPro:IPR022941
Pfam:PF00448 Pfam:PF02881 Pfam:PF02978 PROSITE:PS00300
SMART:SM00382 SMART:SM00962 SMART:SM00963 GO:GO:0005525 EMBL:U00096
EMBL:AP009048 GenomeReviews:AP009048_GR GenomeReviews:U00096_GR
GO:GO:0006612 GO:GO:0003924 GO:GO:0008312 PDB:2XXA PDBsum:2XXA
TCDB:3.A.5.1.1 GO:GO:0006614 SUPFAM:SSF47364 PDB:2XKV PDBsum:2XKV
EMBL:X01818 PDB:2J28 PDBsum:2J28 GO:GO:0005786 eggNOG:COG0541
KO:K03106 Gene3D:1.10.260.30 SUPFAM:SSF47446 HOGENOM:HOG000036164
PANTHER:PTHR11564:SF7 TIGRFAMs:TIGR00959 OMA:GQQVVKI PIR:E65039
RefSeq:NP_417101.1 RefSeq:YP_490833.1 PDB:1DUL PDB:1HQ1 PDB:2PXB
PDB:2PXD PDB:2PXE PDB:2PXF PDB:2PXK PDB:2PXL PDB:2PXP PDB:2PXQ
PDB:2PXT PDB:2PXU PDB:2PXV PDB:3LQX PDBsum:1DUL PDBsum:1HQ1
PDBsum:2PXB PDBsum:2PXD PDBsum:2PXE PDBsum:2PXF PDBsum:2PXK
PDBsum:2PXL PDBsum:2PXP PDBsum:2PXQ PDBsum:2PXT PDBsum:2PXU
PDBsum:2PXV PDBsum:3LQX ProteinModelPortal:P0AGD7 SMR:P0AGD7
DIP:DIP-31865N IntAct:P0AGD7 MINT:MINT-1218614 PRIDE:P0AGD7
EnsemblBacteria:EBESCT00000004690 EnsemblBacteria:EBESCT00000014850
GeneID:12933092 GeneID:947102 KEGG:ecj:Y75_p2558 KEGG:eco:b2610
PATRIC:32120619 EchoBASE:EB0296 EcoGene:EG10300
ProtClustDB:PRK10867 BioCyc:EcoCyc:EG10300-MONOMER
BioCyc:ECOL316407:JW5414-MONOMER EvolutionaryTrace:P0AGD7
Genevestigator:P0AGD7 GO:GO:0048500 Uniprot:P0AGD7
Length = 453
Score = 546 (197.3 bits), Expect = 1.0e-52, P = 1.0e-52
Identities = 117/261 (44%), Positives = 169/261 (64%)
Query: 1 MMDELKDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAAL 60
MMDE+K V +NP E L VVDAMTGQ+AA FN + +TG +LTK+DGD+RGGAAL
Sbjct: 201 MMDEIKQVHASINPVETLFVVDAMTGQDAANTAKAFNEALPLTGVVLTKVDGDARGGAAL 260
Query: 61 SVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQ 120
S++ ++GKPIK +G GE+ E LEPF+PDR+A RILGMGDVLS +E + + + AE++
Sbjct: 261 SIRHITGKPIKFLGVGEKTEALEPFHPDRIASRILGMGDVLSLIEDIESKVDRAQAEKLA 320
Query: 121 KKIMSAN-FDFNDFLKQTRTVARMGSMSRVIGMIPGMGKITPAQVREA--EKSLKIMEAM 177
K+ + FD NDFL+Q R + MG M+ ++G +PGMG+I P V+ +K L MEA+
Sbjct: 321 SKLKKGDGFDLNDFLEQLRQMKNMGGMASLMGKLPGMGQI-PDNVKSQMDDKVLVRMEAI 379
Query: 178 IEAMTPEEREKPELLAESPVRRKRVAQDSGKTEQQVSQLVAQLFQMRVRMKNLMGVMEGG 237
I +MT +ER KPE++ S R++R+A G Q V++L+ Q M+ MK + +GG
Sbjct: 380 INSMTMKERAKPEIIKGS--RKRRIAAGCGMQVQDVNRLLKQFDDMQRMMKKMK---KGG 434
Query: 238 SLPALSNLEDALKSEQKAPPG 258
+ +++ + PPG
Sbjct: 435 MAKMMRSMKGMM------PPG 449
>TIGR_CMR|GSU_0642 [details] [associations]
symbol:GSU_0642 "signal recognition particle protein"
species:243231 "Geobacter sulfurreducens PCA" [GO:0003924 "GTPase
activity" evidence=ISS] [GO:0005048 "signal sequence binding"
evidence=ISS] [GO:0009306 "protein secretion" evidence=ISS]
[GO:0048501 "signal recognition particle, plasma membrane
targeting" evidence=ISS] HAMAP:MF_00306 InterPro:IPR000897
InterPro:IPR003593 InterPro:IPR004125 InterPro:IPR004780
InterPro:IPR013822 InterPro:IPR022941 Pfam:PF00448 Pfam:PF02881
Pfam:PF02978 PROSITE:PS00300 SMART:SM00382 SMART:SM00962
SMART:SM00963 GO:GO:0005525 GO:GO:0003924 GO:GO:0006184
EMBL:AE017180 GenomeReviews:AE017180_GR GO:GO:0008312 GO:GO:0006614
SUPFAM:SSF47364 GO:GO:0005786 KO:K03106 Gene3D:1.10.260.30
SUPFAM:SSF47446 HOGENOM:HOG000036164 PANTHER:PTHR11564:SF7
TIGRFAMs:TIGR00959 OMA:GQQVVKI ProtClustDB:PRK10867
RefSeq:NP_951699.1 ProteinModelPortal:Q74FG7 GeneID:2685362
KEGG:gsu:GSU0642 PATRIC:22024031 BioCyc:GSUL243231:GH27-644-MONOMER
Uniprot:Q74FG7
Length = 452
Score = 541 (195.5 bits), Expect = 3.5e-52, P = 3.5e-52
Identities = 111/243 (45%), Positives = 163/243 (67%)
Query: 1 MMDELKDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAAL 60
+M+EL +K P E+L V DAMTGQEA + + FN + ITG +LTKLDGD++GGAAL
Sbjct: 201 LMNELVRIKEAAEPREILFVADAMTGQEAVNVASGFNDRLDITGVVLTKLDGDAKGGAAL 260
Query: 61 SVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQ 120
S++ V+GKP+KLVG GE+++ LE F+ DR+ RILGMGD+L+ VEKAQ ++AE +Q
Sbjct: 261 SIRAVTGKPVKLVGVGEKLDALEVFHADRLVSRILGMGDILTLVEKAQATFDSQEAERLQ 320
Query: 121 KKIMSANFDFNDFLKQTRTVARMGSMSRVIGMIPGMGK-ITPAQ-VREAEKSLKIMEAMI 178
+K+ + FD DF Q + + +MGS+ ++GMIPG+GK + Q + +E+ LK +EA+I
Sbjct: 321 QKLKKSQFDLEDFRNQLQQIKKMGSIESILGMIPGVGKAMKQLQGAQPSERELKRIEAII 380
Query: 179 EAMTPEEREKPELLAESPVRRKRVAQDSGKTEQQVSQLVAQLFQMRVRMKNLM-----GV 233
+MTP ER ++ S RR R+A+ SG T Q+V+QL+ + + + MK L G+
Sbjct: 381 GSMTPAERANHAIINGS--RRLRIAKGSGTTVQEVNQLLKRFTEAQKMMKQLQKLGPKGL 438
Query: 234 MEG 236
M G
Sbjct: 439 MRG 441
>TIGR_CMR|CBU_0450 [details] [associations]
symbol:CBU_0450 "signal recognition particle protein"
species:227377 "Coxiella burnetii RSA 493" [GO:0003924 "GTPase
activity" evidence=ISS] [GO:0005048 "signal sequence binding"
evidence=ISS] [GO:0009306 "protein secretion" evidence=ISS]
[GO:0048501 "signal recognition particle, plasma membrane
targeting" evidence=ISS] HAMAP:MF_00306 InterPro:IPR000897
InterPro:IPR003593 InterPro:IPR004125 InterPro:IPR004780
InterPro:IPR013822 InterPro:IPR022941 Pfam:PF00448 Pfam:PF02881
Pfam:PF02978 PROSITE:PS00300 SMART:SM00382 SMART:SM00962
SMART:SM00963 GO:GO:0005525 GO:GO:0003924 GO:GO:0006184
EMBL:AE016828 GenomeReviews:AE016828_GR GO:GO:0008312 GO:GO:0006614
SUPFAM:SSF47364 GO:GO:0005786 KO:K03106 Gene3D:1.10.260.30
SUPFAM:SSF47446 HOGENOM:HOG000036164 PANTHER:PTHR11564:SF7
TIGRFAMs:TIGR00959 OMA:GQQVVKI ProtClustDB:PRK10867 HSSP:O07347
RefSeq:NP_819486.1 ProteinModelPortal:Q83E79 PRIDE:Q83E79
GeneID:1208334 KEGG:cbu:CBU_0450 PATRIC:17929591
BioCyc:CBUR227377:GJ7S-448-MONOMER Uniprot:Q83E79
Length = 461
Score = 537 (194.1 bits), Expect = 9.2e-52, P = 9.2e-52
Identities = 109/234 (46%), Positives = 165/234 (70%)
Query: 1 MMDELKDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAAL 60
+M+E+K + + PTE+LLVVD+M GQ+AA + +FN + +TG ILTKLDGD+RGGAAL
Sbjct: 201 LMEEMKAISDAVTPTEILLVVDSMMGQDAANVAKSFNDTLPLTGVILTKLDGDTRGGAAL 260
Query: 61 SVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQ 120
S++ ++ KPIK VG GE+++ LEPF+P+RMA RILGMGD++S VE+AQ + Q+ A ++
Sbjct: 261 SMRMITQKPIKFVGVGEKIDALEPFHPNRMASRILGMGDIVSLVEEAQRKVDQKQAAKIA 320
Query: 121 KKIMSAN-FDFNDFLKQTRTVARMGSMSRVIGMIPGMGKITP-AQVREAEKSLKIMEAMI 178
KK+ N FDF+DFL Q + + +MG M ++G +PGMG++ A +K L M+A+I
Sbjct: 321 KKLQKGNRFDFDDFLAQLQQMKKMGGMQSLLGKLPGMGQLPKGASAFLDDKLLVKMQAII 380
Query: 179 EAMTPEEREKPELLAESPVRRKRVAQDSGKTEQQVSQLVAQLFQMRVRMKNLMG 232
++MT +ER P L+ S R++R+++ SG Q V++L+ Q QM+ MK + G
Sbjct: 381 QSMTLKERRFPALINGS--RKRRISKGSGTGLQDVNKLLKQFVQMQKMMKRMKG 432
>TIGR_CMR|SPO_3246 [details] [associations]
symbol:SPO_3246 "signal recognition particle protein"
species:246200 "Ruegeria pomeroyi DSS-3" [GO:0003924 "GTPase
activity" evidence=ISS] [GO:0005048 "signal sequence binding"
evidence=ISS] [GO:0006617 "SRP-dependent cotranslational protein
targeting to membrane, signal sequence recognition" evidence=ISS]
[GO:0009306 "protein secretion" evidence=ISS] [GO:0048501 "signal
recognition particle, plasma membrane targeting" evidence=ISS]
HAMAP:MF_00306 InterPro:IPR000897 InterPro:IPR003593
InterPro:IPR004125 InterPro:IPR004780 InterPro:IPR013822
InterPro:IPR022941 Pfam:PF00448 Pfam:PF02881 Pfam:PF02978
PROSITE:PS00300 SMART:SM00382 SMART:SM00962 SMART:SM00963
GO:GO:0005525 EMBL:CP000031 GenomeReviews:CP000031_GR GO:GO:0003924
GO:GO:0006184 GO:GO:0008312 GO:GO:0006614 SUPFAM:SSF47364
GO:GO:0005786 KO:K03106 Gene3D:1.10.260.30 SUPFAM:SSF47446
HOGENOM:HOG000036164 PANTHER:PTHR11564:SF7 TIGRFAMs:TIGR00959
OMA:GQQVVKI ProtClustDB:PRK10867 RefSeq:YP_168449.1
ProteinModelPortal:Q5LNF9 GeneID:3195205 KEGG:sil:SPO3246
PATRIC:23379937 Uniprot:Q5LNF9
Length = 510
Score = 537 (194.1 bits), Expect = 9.2e-52, P = 9.2e-52
Identities = 120/291 (41%), Positives = 174/291 (59%)
Query: 1 MMDELKDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAAL 60
+M E++DV+ V+ P E LLVVD +TGQ A + F+ +IGI+G +LT++DGD RGGAAL
Sbjct: 202 LMQEVEDVRNVVTPRETLLVVDGLTGQVAVEVAEEFDAKIGISGVVLTRMDGDGRGGAAL 261
Query: 61 SVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQ 120
S++ V+GKPI+ VG GE+M+ LE F P+R+AGRILGMGD+++ VEKAQE ++ E AE M
Sbjct: 262 SMRAVTGKPIRFVGLGEKMDALETFEPERIAGRILGMGDIVALVEKAQETIEMEQAERMM 321
Query: 121 KKIMSANFDFNDFLKQTRTVARMGSMSRVIGMIPGMGKITPAQVREA---EKSLKIMEAM 177
K++ F+ ND Q + +MG M ++GM+PGMGK+ Q+ A ++ LK A+
Sbjct: 322 KRMAKGQFNMNDLKMQLEQMIQMGGMQGMMGMLPGMGKMAK-QMDAAGLDDRVLKQQIAL 380
Query: 178 IEAMTPEEREKPELLAESPVRRKRVAQDSGKTEQQVSQLVAQLFQMRVRMKNLMGVMEGG 237
I++MT +ER P LL S R+KR+A SG +++L+ QM MK MG M G
Sbjct: 381 IQSMTKKERANPALLQAS--RKKRIAAGSGMEVSDLNKLLKMHRQMADMMKK-MGKMGKG 437
Query: 238 SLPALSNLEDALKSEQKAPPGTAXXXXXXXXXXQFVDPASTRPSPRGFGGG 288
+ LK K G + +DP + + + GGG
Sbjct: 438 GM---------LKQAMKGMFGKGGTPADMAEMAKGMDPKALEAAAKAMGGG 479
>TIGR_CMR|SO_1356 [details] [associations]
symbol:SO_1356 "signal recognition particle protein Ffh"
species:211586 "Shewanella oneidensis MR-1" [GO:0003924 "GTPase
activity" evidence=ISS] [GO:0005048 "signal sequence binding"
evidence=ISS] [GO:0009306 "protein secretion" evidence=ISS]
[GO:0048501 "signal recognition particle, plasma membrane
targeting" evidence=ISS] HAMAP:MF_00306 InterPro:IPR000897
InterPro:IPR003593 InterPro:IPR004125 InterPro:IPR004780
InterPro:IPR013822 InterPro:IPR022941 Pfam:PF00448 Pfam:PF02881
Pfam:PF02978 PROSITE:PS00300 SMART:SM00382 SMART:SM00962
SMART:SM00963 GO:GO:0005525 GO:GO:0003924 GO:GO:0006184
EMBL:AE014299 GenomeReviews:AE014299_GR InterPro:IPR001251
PROSITE:PS50191 GO:GO:0008312 GO:GO:0006614 SUPFAM:SSF47364
GO:GO:0005786 KO:K03106 Gene3D:1.10.260.30 SUPFAM:SSF47446
HOGENOM:HOG000036164 PANTHER:PTHR11564:SF7 TIGRFAMs:TIGR00959
OMA:GQQVVKI ProtClustDB:PRK10867 HSSP:O07347 RefSeq:NP_716976.1
ProteinModelPortal:Q8EH73 GeneID:1169177 KEGG:son:SO_1356
PATRIC:23522366 Uniprot:Q8EH73
Length = 457
Score = 529 (191.3 bits), Expect = 6.5e-51, P = 6.5e-51
Identities = 111/260 (42%), Positives = 166/260 (63%)
Query: 1 MMDELKDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAAL 60
MMDE+K + L P E L VVDAMTGQ+AA FN + +TG ILTK+DGD+RGGAAL
Sbjct: 201 MMDEIKALHAALKPIETLFVVDAMTGQDAANTAKAFNEALPLTGVILTKVDGDARGGAAL 260
Query: 61 SVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQ 120
S++ ++GKPIK +G GE+ + LEPF+PDR+A RILGMGDVLS +E+ + + +E A ++
Sbjct: 261 SIRHITGKPIKFLGVGEKTDALEPFHPDRIASRILGMGDVLSLIEEVERGVDKEKAMKLA 320
Query: 121 KKI-MSANFDFNDFLKQTRTVARMGSMSRVIGMIPGMGKITP---AQVREAEKSLKIMEA 176
K+ +FD DF +Q + + MG M +I +PG+G++ P AQ+++ K + MEA
Sbjct: 321 SKVKQGGSFDLEDFREQLQQMKNMGGMMSMIEKLPGVGQLPPDALAQIQDG-KMTRQMEA 379
Query: 177 MIEAMTPEEREKPELLAESPVRRKRVAQDSGKTEQQVSQLVAQLFQMRVRMKNLMGVMEG 236
+I +MT +ER+ P+L+ S R++R+A SG Q V++L+ Q QM+ MK + +G
Sbjct: 380 IINSMTAKERKNPDLIKGS--RKRRIAAGSGTEIQDVNRLLKQFTQMQKMMKKMSA--KG 435
Query: 237 GSLPALSNLEDALKSEQKAP 256
G + + + K P
Sbjct: 436 GMQKMMRGMRGMMPGGMKFP 455
>TIGR_CMR|VC_0560 [details] [associations]
symbol:VC_0560 "signal recognition particle protein"
species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0003924 "GTPase
activity" evidence=ISS] [GO:0005048 "signal sequence binding"
evidence=ISS] [GO:0009306 "protein secretion" evidence=ISS]
[GO:0048501 "signal recognition particle, plasma membrane
targeting" evidence=ISS] HAMAP:MF_00306 InterPro:IPR000897
InterPro:IPR003593 InterPro:IPR004125 InterPro:IPR004780
InterPro:IPR013822 InterPro:IPR022941 Pfam:PF00448 Pfam:PF02881
Pfam:PF02978 PROSITE:PS00300 SMART:SM00382 SMART:SM00962
SMART:SM00963 GO:GO:0005525 EMBL:AE003852 GenomeReviews:AE003852_GR
GO:GO:0003924 GO:GO:0006184 GO:GO:0008312 GO:GO:0006614
SUPFAM:SSF47364 GO:GO:0005786 KO:K03106 Gene3D:1.10.260.30
SUPFAM:SSF47446 PANTHER:PTHR11564:SF7 TIGRFAMs:TIGR00959
OMA:GQQVVKI ProtClustDB:PRK10867 PIR:H82306 RefSeq:NP_230211.1
HSSP:P07019 ProteinModelPortal:Q9KUG1 SMR:Q9KUG1 DNASU:2615237
GeneID:2615237 KEGG:vch:VC0560 PATRIC:20080238 Uniprot:Q9KUG1
Length = 461
Score = 527 (190.6 bits), Expect = 1.1e-50, P = 1.1e-50
Identities = 111/240 (46%), Positives = 159/240 (66%)
Query: 1 MMDELKDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAAL 60
MM E++ + + +NP E L VVDAMTGQ+AA F + +TG ILTK+DGD+RGGAAL
Sbjct: 201 MMAEIQALHKAINPVETLFVVDAMTGQDAADTAKAFGDALPLTGVILTKVDGDARGGAAL 260
Query: 61 SVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQ 120
SV+ ++GKPIK +G GE+ + LEPF+PDR+A RILGMGDVLS +E Q + QE AE++
Sbjct: 261 SVRHITGKPIKFIGVGEKTDALEPFHPDRIASRILGMGDVLSLIEDLQRNVDQEKAEKLA 320
Query: 121 KKIMSAN-FDFNDFLKQTRTVARMGSMSRVIGMIPGMGKITPAQVREA--EKSLKIMEAM 177
KK FD DF +Q + MG M ++ +PGM ++ PA +++ ++ K MEA+
Sbjct: 321 KKFKEKKGFDLEDFREQLGQMKNMGGMMGMLDKLPGMSQL-PADMKDKVDDRVFKQMEAI 379
Query: 178 IEAMTPEEREKPELLAESPVRRKRVAQDSGKTEQQVSQLVAQLFQMRVRMKNLM-GVMEG 236
I +MT +ER+ P+L+ S R+KR+A SG Q V++L+ Q QM+ MK + G M+G
Sbjct: 380 INSMTMKERQNPDLIKGS--RKKRIAAGSGTQVQDVNRLLKQFTQMQKMMKKMQQGGMKG 437
>NCBI_NP|NP_355632.2 [details] [associations]
symbol:ffh "signal recognition particle protein"
species:176299 "Agrobacterium fabrum str. C58" [GO:0009306 "protein
secretion" evidence=ISS] REFSEQ:NC_003062 Ncbi:NP_355632
Length = 523
Score = 494 (179.0 bits), Expect = 2.3e-50, Sum P(2) = 2.3e-50
Identities = 104/239 (43%), Positives = 150/239 (62%)
Query: 1 MMDELKDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAAL 60
+M E+ D+K+ NP E+LLV D++TGQ+A L F+ +GITG +LT++DGD RGGAAL
Sbjct: 201 LMLEMADIKKKSNPHEILLVADSLTGQDAVNLARNFDERVGITGLVLTRMDGDGRGGAAL 260
Query: 61 SVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQ 120
S++ V+GKPIKL+G GERM +L+ F+P R+A RILGMGD++S VEKA E + E A M
Sbjct: 261 SMRAVTGKPIKLIGIGERMNELDEFHPRRIADRILGMGDIVSLVEKAAENIDAEKARSMA 320
Query: 121 KKIMSANFDFNDFLKQTRTVARMGSMSRVIGMIPGMG--KITPAQVREAEKSLKIMEAMI 178
+K+ FD ND Q + +MG M ++G++PGM K A +K A+I
Sbjct: 321 EKMAKGKFDLNDLADQLGQMKKMGGMGGIMGLMPGMAGMKDKMASAGMNDKMFDRQIAII 380
Query: 179 EAMTPEEREKPELLAESPVRRKRVAQDSGKTEQQVSQLVAQLFQMRVRMKNLMGVMEGG 237
+MT ER P++L S R+KR+A SG ++++L+ M MK + G +GG
Sbjct: 381 SSMTKAERANPDILKHS--RKKRIAAGSGTDAAEINKLLKMHRGMADMMKAMGGKGKGG 437
Score = 47 (21.6 bits), Expect = 2.3e-50, Sum P(2) = 2.3e-50
Identities = 11/25 (44%), Positives = 17/25 (68%)
Query: 231 MGVMEGGSLPALSNLEDA-LKSEQK 254
+G M GG +P LSN++ L++ QK
Sbjct: 452 LGGMMGGGMPDLSNIDPKQLEALQK 476
>UNIPROTKB|P66844 [details] [associations]
symbol:ffh "Signal recognition particle protein"
species:1773 "Mycobacterium tuberculosis" [GO:0005618 "cell wall"
evidence=IDA] [GO:0005886 "plasma membrane" evidence=IDA]
[GO:0040007 "growth" evidence=IMP] HAMAP:MF_00306
InterPro:IPR000897 InterPro:IPR003593 InterPro:IPR004125
InterPro:IPR004780 InterPro:IPR013822 InterPro:IPR022941
Pfam:PF00448 Pfam:PF02881 Pfam:PF02978 PROSITE:PS00300
SMART:SM00382 SMART:SM00962 SMART:SM00963 GO:GO:0005525
GO:GO:0005886 GO:GO:0040007 GO:GO:0005618 EMBL:AE000516
GenomeReviews:AE000516_GR GenomeReviews:AL123456_GR GO:GO:0003924
GO:GO:0006184 EMBL:BX842581 GO:GO:0008312 GO:GO:0006614
SUPFAM:SSF47364 TCDB:3.A.5.2.2 GO:GO:0005786 eggNOG:COG0541
KO:K03106 Gene3D:1.10.260.30 SUPFAM:SSF47446 HOGENOM:HOG000036164
PANTHER:PTHR11564:SF7 TIGRFAMs:TIGR00959 OMA:GQQVVKI
ProtClustDB:PRK10867 PIR:D70747 RefSeq:NP_217432.1
RefSeq:NP_337496.1 RefSeq:YP_006516369.1 ProteinModelPortal:P66844
SMR:P66844 PRIDE:P66844 EnsemblBacteria:EBMYCT00000003158
EnsemblBacteria:EBMYCT00000069261 GeneID:13317709 GeneID:888242
GeneID:925291 KEGG:mtc:MT2984 KEGG:mtu:Rv2916c KEGG:mtv:RVBD_2916c
PATRIC:18128328 TubercuList:Rv2916c Uniprot:P66844
Length = 525
Score = 523 (189.2 bits), Expect = 2.8e-50, P = 2.8e-50
Identities = 107/252 (42%), Positives = 155/252 (61%)
Query: 1 MMDELKDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAAL 60
+M + ++ +NP EVL V+DAM GQ+A F +G TG LTKLDGD+RGGAAL
Sbjct: 207 LMAQAAAIRDAINPDEVLFVLDAMIGQDAVTTAAAFGEGVGFTGVALTKLDGDARGGAAL 266
Query: 61 SVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQ 120
SV+EV+G PI GE++ED + F+PDRMA RILGMGDVLS +E+A++V + AEE
Sbjct: 267 SVREVTGVPILFASTGEKLEDFDVFHPDRMASRILGMGDVLSLIEQAEQVFDAQQAEEAA 326
Query: 121 KKIMSANFDFNDFLKQTRTVARMGSMSRVIGMIPGMGKITPAQVREAEKSLKIMEAMIEA 180
KI + DFL+Q V +MG + ++GM+PG ++ A +K L ++A+I
Sbjct: 327 AKIGAGELTLEDFLEQMLAVRKMGPIGNLLGMLPGAAQMKDALAEVDDKQLDRVQAIIRG 386
Query: 181 MTPEEREKPELLAESPVRRKRVAQDSGKTEQQVSQLVAQLFQMRVRMKNLMGVMEGGSLP 240
MTP+ER P+++ S RR R+A SG T +V+QLV + F+ R M +++G G +P
Sbjct: 387 MTPQERADPKIINAS--RRLRIANGSGVTVSEVNQLVERFFEARKMMSSMLG---GMGIP 441
Query: 241 ALSNLEDALKSE 252
+ KS+
Sbjct: 442 GIGRKSATRKSK 453
>UNIPROTKB|O07347 [details] [associations]
symbol:ffh "Signal recognition particle protein"
species:271 "Thermus aquaticus" [GO:0005515 "protein binding"
evidence=IPI] HAMAP:MF_00306 InterPro:IPR000897 InterPro:IPR003593
InterPro:IPR004125 InterPro:IPR004780 InterPro:IPR013822
InterPro:IPR022941 Pfam:PF00448 Pfam:PF02881 Pfam:PF02978
PROSITE:PS00300 SMART:SM00382 SMART:SM00962 SMART:SM00963
GO:GO:0005525 GO:GO:0003924 GO:GO:0006184 GO:GO:0008312
GO:GO:0006614 SUPFAM:SSF47364 PDB:1OKK PDB:1RJ9 PDB:2CNW PDB:2J7P
PDB:2XKV PDBsum:1OKK PDBsum:1RJ9 PDBsum:2CNW PDBsum:2J7P
PDBsum:2XKV PDB:1RY1 PDBsum:1RY1 GO:GO:0005786 Gene3D:1.10.260.30
SUPFAM:SSF47446 PANTHER:PTHR11564:SF7 TIGRFAMs:TIGR00959
EMBL:U82109 PDB:1FFH PDB:1JPJ PDB:1JPN PDB:1LS1 PDB:1NG1 PDB:1O87
PDB:2C03 PDB:2C04 PDB:2FFH PDB:2IY3 PDB:2J45 PDB:2J46 PDB:2NG1
PDB:3NG1 PDBsum:1FFH PDBsum:1JPJ PDBsum:1JPN PDBsum:1LS1
PDBsum:1NG1 PDBsum:1O87 PDBsum:2C03 PDBsum:2C04 PDBsum:2FFH
PDBsum:2IY3 PDBsum:2J45 PDBsum:2J46 PDBsum:2NG1 PDBsum:3NG1
ProteinModelPortal:O07347 SMR:O07347 IntAct:O07347
EvolutionaryTrace:O07347 Uniprot:O07347
Length = 430
Score = 521 (188.5 bits), Expect = 4.6e-50, P = 4.6e-50
Identities = 107/230 (46%), Positives = 157/230 (68%)
Query: 1 MMDELKDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAAL 60
+M EL +K VL P EVLLV+DAMTGQEA ++ F+ ++G+TG +LTKLDGD+RGGAAL
Sbjct: 198 LMGELARLKEVLGPDEVLLVLDAMTGQEALSVARAFDEKVGVTGLVLTKLDGDARGGAAL 257
Query: 61 SVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQ 120
S + V+GKPI G E+ E LEPFYP+R+AGRILGMGDV S EK + + +A +
Sbjct: 258 SARHVTGKPIYFAGVSEKPEGLEPFYPERLAGRILGMGDVASLAEKVRAAGLEAEAPKSA 317
Query: 121 KKIMSANFDFNDFLKQTRTVARMGSMSRVIGMIPGMGKITPAQVREAEKSLKIMEAMIEA 180
K++ DFLKQ + + R+G S ++G++PG+ P ++ EK++K +EA++ +
Sbjct: 318 KEL-----SLEDFLKQMQNLKRLGPFSEILGLLPGV----PQGLKVDEKAIKRLEAIVLS 368
Query: 181 MTPEEREKPELLAESPVRRKRVAQDSGKTEQQVSQLVAQLFQMRVRMKNL 230
MTPEER+ P +L S RRKR+A+ SG + Q+V++ + +M+ MK+L
Sbjct: 369 MTPEERKDPRILNGS--RRKRIAKGSGTSVQEVNRFIKAFEEMKALMKSL 416
>TIGR_CMR|CPS_4073 [details] [associations]
symbol:CPS_4073 "signal recognition particle protein"
species:167879 "Colwellia psychrerythraea 34H" [GO:0003924 "GTPase
activity" evidence=ISS] [GO:0005786 "signal recognition particle,
endoplasmic reticulum targeting" evidence=ISS] [GO:0006617
"SRP-dependent cotranslational protein targeting to membrane,
signal sequence recognition" evidence=ISS] HAMAP:MF_00306
InterPro:IPR000897 InterPro:IPR003593 InterPro:IPR004125
InterPro:IPR004780 InterPro:IPR013822 InterPro:IPR022941
Pfam:PF00448 Pfam:PF02881 Pfam:PF02978 PROSITE:PS00300
SMART:SM00382 SMART:SM00962 SMART:SM00963 GO:GO:0005525
GO:GO:0003924 GO:GO:0006184 EMBL:CP000083 GenomeReviews:CP000083_GR
GO:GO:0008312 GO:GO:0006614 SUPFAM:SSF47364 GO:GO:0005786
eggNOG:COG0541 KO:K03106 Gene3D:1.10.260.30 SUPFAM:SSF47446
HOGENOM:HOG000036164 PANTHER:PTHR11564:SF7 TIGRFAMs:TIGR00959
OMA:GQQVVKI ProtClustDB:PRK10867 RefSeq:YP_270728.1
ProteinModelPortal:Q47WU4 SMR:Q47WU4 STRING:Q47WU4 GeneID:3519232
KEGG:cps:CPS_4073 PATRIC:21471017
BioCyc:CPSY167879:GI48-4086-MONOMER Uniprot:Q47WU4
Length = 463
Score = 516 (186.7 bits), Expect = 1.5e-49, P = 1.5e-49
Identities = 109/260 (41%), Positives = 166/260 (63%)
Query: 1 MMDELKDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAAL 60
MM E++ + +NP E L VDAMTGQ+AA FN + +TG ILTK DGD+RGGAAL
Sbjct: 201 MMAEIQQLHAAINPIETLFTVDAMTGQDAANTAKAFNDALPLTGIILTKTDGDARGGAAL 260
Query: 61 SVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQ 120
S++ ++GKPIK +G GE++E LEPF+PDR+A RILGMGDVLS VE+ ++ + ++ AE++
Sbjct: 261 SIRHITGKPIKFMGVGEKIEALEPFHPDRIASRILGMGDVLSLVEEIEQKVDRKQAEKLA 320
Query: 121 KKIMSAN-FDFNDFLKQTRTVARMGSMSRVIGMIPGMGKITPAQVREAEKSLKI-MEAMI 178
K+ S F DF Q + MG M+ ++ +PGMG ++ + + + + MEA+I
Sbjct: 321 NKVKSGKGFSLEDFRDQLVQMKSMGGMTGMMDKLPGMGNMSGKIKDQMDDKITVQMEAII 380
Query: 179 EAMTPEEREKPELLAESPVRRKRVAQDSGKTEQQVSQLVAQLFQMRVRMKNLMGVMEGGS 238
+MTP ERE+P+++ S R++R+A SG Q V++L+ Q QM+ MK + G +GG
Sbjct: 381 NSMTPGERERPDIIKGS--RKRRIAVGSGTQIQDVNKLLKQFTQMQKMMKKMSG--KGGM 436
Query: 239 LPALSNLEDALKSEQKAPPG 258
+ +++ + PPG
Sbjct: 437 KKMMRSMQGMM------PPG 450
>TIGR_CMR|ECH_0475 [details] [associations]
symbol:ECH_0475 "signal recognition particle protein"
species:205920 "Ehrlichia chaffeensis str. Arkansas" [GO:0003924
"GTPase activity" evidence=ISS] [GO:0005048 "signal sequence
binding" evidence=ISS] [GO:0006617 "SRP-dependent cotranslational
protein targeting to membrane, signal sequence recognition"
evidence=ISS] [GO:0009306 "protein secretion" evidence=ISS]
[GO:0048501 "signal recognition particle, plasma membrane
targeting" evidence=ISS] InterPro:IPR000897 InterPro:IPR003593
InterPro:IPR004125 InterPro:IPR004780 InterPro:IPR013822
Pfam:PF00448 Pfam:PF02881 Pfam:PF02978 SMART:SM00382 SMART:SM00962
SMART:SM00963 GO:GO:0005525 EMBL:CP000236 GenomeReviews:CP000236_GR
GO:GO:0003924 GO:GO:0006184 GO:GO:0008312 GO:GO:0006614
SUPFAM:SSF47364 eggNOG:COG0541 KO:K03106 Gene3D:1.10.260.30
SUPFAM:SSF47446 HOGENOM:HOG000036164 PANTHER:PTHR11564:SF7
TIGRFAMs:TIGR00959 OMA:GQQVVKI ProtClustDB:PRK10867 GO:GO:0048500
RefSeq:YP_507291.1 ProteinModelPortal:Q2GGZ2 STRING:Q2GGZ2
GeneID:3927281 KEGG:ech:ECH_0475 PATRIC:20576422
BioCyc:ECHA205920:GJNR-477-MONOMER Uniprot:Q2GGZ2
Length = 448
Score = 485 (175.8 bits), Expect = 3.0e-46, P = 3.0e-46
Identities = 98/235 (41%), Positives = 149/235 (63%)
Query: 1 MMDELKDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAAL 60
MM+EL+ +K + +P+EV+LVVD+M GQ+A + +FN IGITG ILT++DGDSRGGAAL
Sbjct: 199 MMEELRAIKDLTSPSEVILVVDSMIGQDAINVAKSFNDNIGITGIILTRIDGDSRGGAAL 258
Query: 61 SVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQ 120
S+K G PIK + GE++ DL+ FYP+R+A RIL MGDV+S VEKA E + + +EMQ
Sbjct: 259 SMKMSVGSPIKFIANGEKLSDLDDFYPERIAKRILNMGDVVSLVEKATEAVGKHAIDEMQ 318
Query: 121 KKIMSANFDFNDFLKQTRTVARMGSMSRVIGMIPGMGKITPAQVREAEKSLKIME--AMI 178
KK FD ND ++Q + + ++G ++ ++ +P G QV ++ + A++
Sbjct: 319 KKAQKGKFDLNDLVQQLKALNKLGGIANILKFMPNFGADVKRQVSGIANDSRVKQYIAIV 378
Query: 179 EAMTPEEREKPELLAESPVRRKRVAQDSGKTEQQVSQLVAQLFQMRVRMKNLMGV 233
+MT +ERE P++L + R+ R+A+ SG ++ L+ Q QM M V
Sbjct: 379 NSMTKKERENPKIL--NGARKARIAKGSGVHVNVINMLIKQFNQMSSLMNKFSKV 431
>TIGR_CMR|CJE_0809 [details] [associations]
symbol:CJE_0809 "signal recognition particle protein"
species:195099 "Campylobacter jejuni RM1221" [GO:0003924 "GTPase
activity" evidence=ISS] [GO:0005048 "signal sequence binding"
evidence=ISS] [GO:0009306 "protein secretion" evidence=ISS]
[GO:0048501 "signal recognition particle, plasma membrane
targeting" evidence=ISS] InterPro:IPR000897 InterPro:IPR003593
InterPro:IPR004125 InterPro:IPR004780 InterPro:IPR013822
Pfam:PF00448 Pfam:PF02881 Pfam:PF02978 PROSITE:PS00300
SMART:SM00382 SMART:SM00962 SMART:SM00963 GO:GO:0005525
GO:GO:0003924 GO:GO:0006184 EMBL:CP000025 GenomeReviews:CP000025_GR
GO:GO:0008312 GO:GO:0006614 SUPFAM:SSF47364 eggNOG:COG0541
KO:K03106 Gene3D:1.10.260.30 SUPFAM:SSF47446 HOGENOM:HOG000036164
OMA:DSGKTEQ PANTHER:PTHR11564:SF7 TIGRFAMs:TIGR00959
ProtClustDB:PRK10867 GO:GO:0048500 RefSeq:YP_178813.1
ProteinModelPortal:Q5HV72 STRING:Q5HV72 GeneID:3230759
KEGG:cjr:CJE0809 PATRIC:20043363 BioCyc:CJEJ195099:GJC0-824-MONOMER
Uniprot:Q5HV72
Length = 445
Score = 472 (171.2 bits), Expect = 7.1e-45, P = 7.1e-45
Identities = 93/236 (39%), Positives = 152/236 (64%)
Query: 1 MMDELKDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAAL 60
+M+ELK VK VLNP E+ V DAM+GQ+ +FN + I+G IL+K D D++GG AL
Sbjct: 195 LMNELKAVKDVLNPDEIFYVADAMSGQDGVKTAASFNEALNISGVILSKFDADTKGGVAL 254
Query: 61 SVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQ 120
+ + G P++ +G GE++ DLE F PDR+ RI+G GD+ + EK V+ +++A+++
Sbjct: 255 GIAKQIGIPLRFIGVGEKVADLEVFIPDRIVSRIMGEGDLATLAEKTAAVIDEKEAKKLN 314
Query: 121 KKIMSANFDFNDFLKQTRTVARMGSMSRVIGMIPGMGKITPAQVREAE----KSLKIMEA 176
+KI F+FNDFL Q ++ ++GSM +IGMIPG+G + A V++ + K + ++A
Sbjct: 315 QKIKKGEFNFNDFLNQMESIKKLGSMKSLIGMIPGLGGMANA-VKDIDLDNSKEIIHIKA 373
Query: 177 MIEAMTPEEREKPELLAESPVRRKRVAQDSGKTEQQVSQLVAQLFQMRVRMKNLMG 232
MI +MTP+ERE P+LL + R++R+A+ +G ++ +V++ + Q K G
Sbjct: 374 MISSMTPKERENPDLLNNA--RKRRIAEGAGLSQVEVNRFLKQFSNAAKLAKRFSG 427
>TIGR_CMR|APH_0349 [details] [associations]
symbol:APH_0349 "signal recognition particle protein"
species:212042 "Anaplasma phagocytophilum HZ" [GO:0003924 "GTPase
activity" evidence=ISS] [GO:0005048 "signal sequence binding"
evidence=ISS] [GO:0006617 "SRP-dependent cotranslational protein
targeting to membrane, signal sequence recognition" evidence=ISS]
[GO:0009306 "protein secretion" evidence=ISS] [GO:0048501 "signal
recognition particle, plasma membrane targeting" evidence=ISS]
InterPro:IPR000897 InterPro:IPR003593 InterPro:IPR004125
InterPro:IPR004780 InterPro:IPR013822 Pfam:PF00448 Pfam:PF02881
Pfam:PF02978 PROSITE:PS00300 SMART:SM00382 SMART:SM00962
SMART:SM00963 GO:GO:0005525 GO:GO:0003924 GO:GO:0006184
EMBL:CP000235 GenomeReviews:CP000235_GR GO:GO:0008312 GO:GO:0006614
SUPFAM:SSF47364 eggNOG:COG0541 KO:K03106 Gene3D:1.10.260.30
SUPFAM:SSF47446 HOGENOM:HOG000036164 PANTHER:PTHR11564:SF7
TIGRFAMs:TIGR00959 OMA:GQQVVKI ProtClustDB:PRK10867 GO:GO:0048500
RefSeq:YP_504956.1 ProteinModelPortal:Q2GKZ5 STRING:Q2GKZ5
GeneID:3930944 KEGG:aph:APH_0349 PATRIC:20949288
BioCyc:APHA212042:GHPM-378-MONOMER Uniprot:Q2GKZ5
Length = 449
Score = 454 (164.9 bits), Expect = 5.7e-43, P = 5.7e-43
Identities = 97/225 (43%), Positives = 142/225 (63%)
Query: 1 MMDELKDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAAL 60
M+DELK VK+ ++P E++LVVD++ GQ+A +V FN E+GITG I T+ DGD RGGA L
Sbjct: 200 MIDELKCVKKEVSPAEIVLVVDSLMGQDAVTMVRKFNEELGITGTIFTRADGDPRGGAIL 259
Query: 61 SVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQ 120
S+K V+G PIK + GE+ EDL+ FYPDR+A R+L MGDV S VEKA E + ++ E+Q
Sbjct: 260 SMKLVAGCPIKFMSTGEKPEDLDDFYPDRIARRMLNMGDVASLVEKAVEAVGKDTINELQ 319
Query: 121 KKIMSANFDFNDFLKQTRTVARMGSMSRVIGMIPGMGKITPAQVREAEKSLKI-ME-AMI 178
K FD +D + Q + + +MG ++ ++ IP G +V K+ M A+I
Sbjct: 320 AKAKKGKFDLDDLVIQLKALNKMGGIANIMKFIPAFGNDIKRKVAGIADDSKVDMYIAII 379
Query: 179 EAMTPEEREKPELLAESPVRRKRVAQDSGKTEQQVSQLVAQLFQM 223
+MT +ER PE+L + R+ R+A+ +G V+ L+ Q QM
Sbjct: 380 NSMTKQERANPEIL--NGARKARIAKGAGVKVDAVNALLKQYNQM 422
>TIGR_CMR|NSE_0540 [details] [associations]
symbol:NSE_0540 "signal recognition particle protein"
species:222891 "Neorickettsia sennetsu str. Miyayama" [GO:0003924
"GTPase activity" evidence=ISS] [GO:0006617 "SRP-dependent
cotranslational protein targeting to membrane, signal sequence
recognition" evidence=ISS] [GO:0048501 "signal recognition
particle, plasma membrane targeting" evidence=ISS]
InterPro:IPR000897 InterPro:IPR003593 InterPro:IPR004125
InterPro:IPR004780 InterPro:IPR013822 Pfam:PF00448 Pfam:PF02881
Pfam:PF02978 SMART:SM00382 SMART:SM00962 SMART:SM00963
GO:GO:0005525 GO:GO:0003924 GO:GO:0006184 EMBL:CP000237
GenomeReviews:CP000237_GR GO:GO:0008312 GO:GO:0006614
SUPFAM:SSF47364 eggNOG:COG0541 KO:K03106 Gene3D:1.10.260.30
SUPFAM:SSF47446 HOGENOM:HOG000036164 PANTHER:PTHR11564:SF7
OMA:GQQVVKI ProtClustDB:PRK10867 GO:GO:0048500 RefSeq:YP_506423.1
ProteinModelPortal:Q2GDM3 STRING:Q2GDM3 GeneID:3931977
KEGG:nse:NSE_0540 PATRIC:22681129
BioCyc:NSEN222891:GHFU-559-MONOMER Uniprot:Q2GDM3
Length = 449
Score = 417 (151.9 bits), Expect = 4.8e-39, P = 4.8e-39
Identities = 85/225 (37%), Positives = 145/225 (64%)
Query: 1 MMDELKDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAAL 60
+M+ELK +K L P+E+ V+DAM GQ++ + TF+ EIG TG I+++LD D+R G+ L
Sbjct: 203 LMEELKVIKNRLQPSEIFQVLDAMMGQDSLNVARTFHSEIGTTGVIVSRLDSDARVGSVL 262
Query: 61 SVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQ 120
SV++ G PI+ G GER+ DLE F+P+RMAGRI+G GD+ S VE A + +E ++
Sbjct: 263 SVRQSVGLPIRFCGAGERVNDLEEFHPERMAGRIMGAGDIASLVEYASSEVGEERIGSIR 322
Query: 121 KKIMSANFDFNDFLKQTRTVARMGSMSRVIGMIPGMGKITPAQVREAEKSLKIMEAMIEA 180
K+I + FD++D + Q +++ ++G +++++ IPG+ K+ P + + +LK AMI +
Sbjct: 323 KRIEAGKFDYDDLVLQLKSIDKLGGIAKLLRFIPGINKV-PTEHLVDDTTLKKNLAMIGS 381
Query: 181 MTPEEREKPELLAESPVRRKRVAQDSGKTEQQVSQLVAQLFQMRV 225
MT ER + + +S R+ R+A +G +V++L+ + R+
Sbjct: 382 MTKRERACLDSINQS--RKSRIASGAGVKIYEVNKLIKNFEKARL 424
>SGD|S000006292 [details] [associations]
symbol:SRP54 "Signal recognition particle (SRP) subunit
(homolog of mammalian SRP54)" species:4932 "Saccharomyces
cerevisiae" [GO:0008312 "7S RNA binding" evidence=IEA;IDA]
[GO:0006614 "SRP-dependent cotranslational protein targeting to
membrane" evidence=IEA;IMP] [GO:0006617 "SRP-dependent
cotranslational protein targeting to membrane, signal sequence
recognition" evidence=IC;ISA] [GO:0005525 "GTP binding"
evidence=IEA;ISA] [GO:0006184 "GTP catabolic process" evidence=IEA]
[GO:0005048 "signal sequence binding" evidence=IPI] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0005096 "GTPase activator activity"
evidence=IEA] [GO:0048500 "signal recognition particle"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0045047
"protein targeting to ER" evidence=IPI] [GO:0005786 "signal
recognition particle, endoplasmic reticulum targeting"
evidence=IEA;IDA] [GO:0043547 "positive regulation of GTPase
activity" evidence=IEA] [GO:0003924 "GTPase activity" evidence=IEA]
InterPro:IPR000897 InterPro:IPR003593 InterPro:IPR004125
InterPro:IPR006325 InterPro:IPR013822 InterPro:IPR022941
Pfam:PF00448 Pfam:PF02881 Pfam:PF02978 PROSITE:PS00300
SMART:SM00382 SMART:SM00962 SMART:SM00963 SGD:S000006292
GO:GO:0005525 GO:GO:0005096 GO:GO:0043547 GO:GO:0003924
GO:GO:0006184 EMBL:BK006949 EMBL:U51033 GO:GO:0005048 GO:GO:0008312
SUPFAM:SSF47364 GO:GO:0005786 GO:GO:0006617 eggNOG:COG0541
HOGENOM:HOG000036165 KO:K03106 Gene3D:1.10.260.30 SUPFAM:SSF47446
TIGRFAMs:TIGR01425 GeneTree:ENSGT00550000074824 OrthoDB:EOG4TMV9N
EMBL:X16908 EMBL:M55517 EMBL:X51614 PIR:S69073 RefSeq:NP_015413.1
ProteinModelPortal:P20424 SMR:P20424 DIP:DIP-2943N IntAct:P20424
MINT:MINT-484768 STRING:P20424 PaxDb:P20424 PeptideAtlas:P20424
EnsemblFungi:YPR088C GeneID:856203 KEGG:sce:YPR088C CYGD:YPR088c
OMA:TAGRHKE NextBio:981405 Genevestigator:P20424 GermOnline:YPR088C
Uniprot:P20424
Length = 541
Score = 363 (132.8 bits), Expect = 1.9e-35, Sum P(2) = 1.9e-35
Identities = 83/230 (36%), Positives = 123/230 (53%)
Query: 1 MMDELKDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAAL 60
+ E+ ++ V+ P + ++V+DA GQ A F ILTK+DG +RGG A+
Sbjct: 209 LFQEMIEISNVIKPNQTIMVLDASIGQAAEQQSKAFKESSDFGAIILTKMDGHARGGGAI 268
Query: 61 SVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQ 120
S + PI +G GE + DLE F P ++LG+GD+ S E+ Q V +EDA+
Sbjct: 269 SAVAATNTPIIFIGTGEHIHDLEKFSPKSFISKLLGIGDIESLFEQLQTVSNKEDAKATM 328
Query: 121 KKIMSANFDFNDFLKQTRTVARMGSMSRVIGMIPGMGKITPAQVREAEKSLKI--MEAMI 178
+ I F DF KQ +T+ +MG +S + MIPGM + QV E E S K+ M ++
Sbjct: 329 ENIQKGKFTLLDFKKQMQTIMKMGPLSNIAQMIPGMSNMMN-QVGEEETSQKMKKMVYVL 387
Query: 179 EAMTPEEREKP-ELLAESPVRRKRVAQDSGKTEQQVSQLVAQLFQMRVRM 227
++MT EE E + E P R RVA+ SG + +V ++ Q QM RM
Sbjct: 388 DSMTKEELESDGRMFIEEPTRMVRVAKGSGTSVFEVEMILMQQ-QMMARM 436
Score = 39 (18.8 bits), Expect = 1.9e-35, Sum P(2) = 1.9e-35
Identities = 10/29 (34%), Positives = 15/29 (51%)
Query: 209 TEQQVSQLVAQLFQMRVRMKNLMGVMEGG 237
T Q + Q +L Q M+N+M + GG
Sbjct: 479 TPQMMQQAQQKLKQNPGLMQNMMNMFGGG 507
>ZFIN|ZDB-GENE-040426-818 [details] [associations]
symbol:srp54 "signal recognition particle 54"
species:7955 "Danio rerio" [GO:0017111 "nucleoside-triphosphatase
activity" evidence=IEA] [GO:0048500 "signal recognition particle"
evidence=IEA] [GO:0003924 "GTPase activity" evidence=IEA]
[GO:0005525 "GTP binding" evidence=IEA] [GO:0006614 "SRP-dependent
cotranslational protein targeting to membrane" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0008312 "7S RNA
binding" evidence=IEA] HAMAP:MF_00306 InterPro:IPR000897
InterPro:IPR003593 InterPro:IPR004125 InterPro:IPR006325
InterPro:IPR013822 InterPro:IPR022941 Pfam:PF00448 Pfam:PF02881
Pfam:PF02978 PROSITE:PS00300 SMART:SM00382 SMART:SM00962
SMART:SM00963 ZFIN:ZDB-GENE-040426-818 GO:GO:0005525 GO:GO:0003924
GO:GO:0006184 GO:GO:0008312 GO:GO:0006614 SUPFAM:SSF47364
eggNOG:COG0541 HOGENOM:HOG000036165 KO:K03106 Gene3D:1.10.260.30
SUPFAM:SSF47446 TIGRFAMs:TIGR01425 CTD:6729
GeneTree:ENSGT00550000074824 HOVERGEN:HBG061072 OMA:GQQVVKI
OrthoDB:EOG45MN54 GO:GO:0048500 HSSP:P70722 EMBL:BX088587
EMBL:BC045474 EMBL:BC067588 IPI:IPI00483938 RefSeq:NP_957282.1
UniGene:Dr.7990 SMR:Q7ZVN5 STRING:Q7ZVN5 Ensembl:ENSDART00000018678
Ensembl:ENSDART00000133424 GeneID:393963 KEGG:dre:393963
InParanoid:Q7ZVN5 NextBio:20814934 Uniprot:Q7ZVN5
Length = 504
Score = 353 (129.3 bits), Expect = 2.9e-32, P = 2.9e-32
Identities = 78/262 (29%), Positives = 138/262 (52%)
Query: 1 MMDELKDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAAL 60
+ +E+ V + P ++ V+DA GQ A F ++ + I+TKLDG ++GG AL
Sbjct: 201 LFEEMLQVSNAVQPDNIVYVMDASIGQACEAQAKAFKDKVDVASVIVTKLDGHAKGGGAL 260
Query: 61 SVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQ 120
S + PI +G GE ++D EPF ++LGMGD+ ++K E ++ +D EE+
Sbjct: 261 SAVAATKSPIIFIGTGEHIDDFEPFKTQPFISKLLGMGDIEGLIDKVNE-LKLDDNEELI 319
Query: 121 KKIMSANFDFNDFLKQTRTVARMGSMSRVIGMIPGMGK--ITPAQVREAEKSLKIMEAMI 178
K+ F D +Q + + +MG +++GMIPG G ++ +E+ LK + ++
Sbjct: 320 DKLKHGQFTLRDMYEQFQNIMKMGPFGQIMGMIPGFGTDFMSKGNEQESMARLKKLMTIM 379
Query: 179 EAMTPEE---REKPELLAESPVRRKRVAQDSGKTEQQVSQLVAQL--F-QMRVRMKNLMG 232
++M +E ++ +L ++ P R +RVA+ SG + V +L+ Q F QM +M + G
Sbjct: 380 DSMNDQELDNKDGAKLFSKQPNRIQRVARGSGVATRDVQELLTQYTKFAQMVKKMGGIKG 439
Query: 233 VMEGGSLPALSNLEDALKSEQK 254
+ +GG + N K Q+
Sbjct: 440 LFKGGDMSKNVNPSQMAKLNQQ 461
>UNIPROTKB|E1C6G6 [details] [associations]
symbol:SRP54 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003924 "GTPase activity" evidence=IEA] [GO:0005525
"GTP binding" evidence=IEA] [GO:0006614 "SRP-dependent
cotranslational protein targeting to membrane" evidence=IEA]
[GO:0008312 "7S RNA binding" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0005786 "signal recognition particle, endoplasmic
reticulum targeting" evidence=IEA] [GO:0008144 "drug binding"
evidence=IEA] [GO:0019003 "GDP binding" evidence=IEA] [GO:0030942
"endoplasmic reticulum signal peptide binding" evidence=IEA]
[GO:0042493 "response to drug" evidence=IEA] [GO:0043021
"ribonucleoprotein complex binding" evidence=IEA] HAMAP:MF_00306
InterPro:IPR000897 InterPro:IPR003593 InterPro:IPR004125
InterPro:IPR006325 InterPro:IPR013822 InterPro:IPR022941
Pfam:PF00448 Pfam:PF02881 Pfam:PF02978 PROSITE:PS00300
SMART:SM00382 SMART:SM00962 SMART:SM00963 GO:GO:0005525
GO:GO:0005634 GO:GO:0042493 GO:GO:0008144 GO:GO:0003924
GO:GO:0043021 GO:GO:0019003 GO:GO:0008312 GO:GO:0006614
SUPFAM:SSF47364 GO:GO:0005786 KO:K03106 Gene3D:1.10.260.30
SUPFAM:SSF47446 TIGRFAMs:TIGR01425 GO:GO:0030942 CTD:6729
GeneTree:ENSGT00550000074824 OMA:GQQVVKI EMBL:AADN02003392
IPI:IPI00581279 RefSeq:XP_421238.1 ProteinModelPortal:E1C6G6
PRIDE:E1C6G6 Ensembl:ENSGALT00000016327 GeneID:423322
KEGG:gga:423322 NextBio:20825811 Uniprot:E1C6G6
Length = 504
Score = 351 (128.6 bits), Expect = 4.7e-32, P = 4.7e-32
Identities = 77/262 (29%), Positives = 139/262 (53%)
Query: 1 MMDELKDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAAL 60
+ +E+ V + P ++ V+DA GQ A F ++ + I+TKLDG ++GG AL
Sbjct: 201 LFEEMLQVANAIQPDNIVYVMDASIGQACEAQAKAFKDKVDVASVIVTKLDGHAKGGGAL 260
Query: 61 SVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQ 120
S + PI +G GE ++D EPF ++LGMGD+ ++K E ++ +D E +
Sbjct: 261 SAVAATKSPIIFIGTGEHIDDFEPFKTQPFISKLLGMGDIEGLIDKVNE-LKLDDNEALI 319
Query: 121 KKIMSANFDFNDFLKQTRTVARMGSMSRVIGMIPGMGK--ITPAQVREAEKSLKIMEAMI 178
+K+ F D +Q + + +MG S+++GMIPG G ++ +E+ LK + ++
Sbjct: 320 EKLKHGQFTLRDMYEQFQNIMKMGPFSQILGMIPGFGTDFMSKGNEQESMARLKKLMTIM 379
Query: 179 EAMTPEEREKPE---LLAESPVRRKRVAQDSGKTEQQVSQLVAQL--F-QMRVRMKNLMG 232
++M +E + + + ++ P R +RVA+ SG + + V +L+ Q F QM +M + G
Sbjct: 380 DSMNDQELDSTDGAKVFSKQPGRIQRVARGSGVSTRDVQELLTQYTKFAQMVKKMGGIKG 439
Query: 233 VMEGGSLPALSNLEDALKSEQK 254
+ +GG + N K Q+
Sbjct: 440 LFKGGDMSKNVNPSQLAKLNQQ 461
>RGD|2323636 [details] [associations]
symbol:Fam177a1 "family with sequence similarity 177, member A1"
species:10116 "Rattus norvegicus" [GO:0003924 "GTPase activity"
evidence=IEA] [GO:0005525 "GTP binding" evidence=IEA] [GO:0006614
"SRP-dependent cotranslational protein targeting to membrane"
evidence=IEA] [GO:0008312 "7S RNA binding" evidence=IEA]
[GO:0048500 "signal recognition particle" evidence=IEA]
HAMAP:MF_00306 InterPro:IPR000897 InterPro:IPR003593
InterPro:IPR004125 InterPro:IPR006325 InterPro:IPR013822
InterPro:IPR022941 Pfam:PF00448 Pfam:PF02881 Pfam:PF02978
PROSITE:PS00300 SMART:SM00382 SMART:SM00962 SMART:SM00963
RGD:2323636 GO:GO:0005525 GO:GO:0003924 GO:GO:0006184 GO:GO:0008312
GO:GO:0006614 SUPFAM:SSF47364 GO:GO:0005786 Gene3D:1.10.260.30
SUPFAM:SSF47446 TIGRFAMs:TIGR01425 GeneTree:ENSGT00550000074824
IPI:IPI00387699 PRIDE:F1M7P5 Ensembl:ENSRNOT00000052076
ArrayExpress:F1M7P5 Uniprot:F1M7P5
Length = 500
Score = 351 (128.6 bits), Expect = 4.7e-32, P = 4.7e-32
Identities = 78/264 (29%), Positives = 143/264 (54%)
Query: 1 MMDELKDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAAL 60
+ +E+ V + P ++ V+DA GQ A F ++ + I+TKLDG ++GG AL
Sbjct: 201 LFEEMLQVSNAIQPDNIVYVMDASIGQACEAQAKAFKDKVDVASVIVTKLDGHAKGGGAL 260
Query: 61 SVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQ 120
S + PI +G GE ++D EPF ++LGMGD+ ++K E ++ +D E +
Sbjct: 261 SAVAATKSPIIFIGTGEHIDDFEPFKTQPFISKLLGMGDIEGLIDKVNE-LKLDDNEALI 319
Query: 121 KKIMSANFDFNDFLKQTRTVARMGSMSRVIGMIPGMGK--ITPAQVREAEKSLKIMEAMI 178
+K+ F D +Q + + +MG S+++GMIPG G ++ +E+ LK + ++
Sbjct: 320 EKLKHGQFTLRDMYEQFQNIMKMGPFSQILGMIPGFGTDFMSKGNEQESMARLKKLMTIM 379
Query: 179 EAMTPEEREKPE---LLAESPVRRKRVAQDSGKTEQQVSQLVAQL--F-QMRVRMKNLMG 232
++M +E + + + ++ P R +RVA+ SG + + V +L+ Q F QM +M + G
Sbjct: 380 DSMNDQELDSTDGAKVFSKQPGRIQRVARGSGVSTRDVQELLTQYTKFAQMVKKMGGIKG 439
Query: 233 VMEGGSLPA-LSNLEDALKSEQKA 255
+ +GG + +S + A ++Q A
Sbjct: 440 LFKGGDMSKNVSQSQMAKLNQQMA 463
>RGD|621390 [details] [associations]
symbol:Srp54 "signal recognition particle 54A" species:10116
"Rattus norvegicus" [GO:0003674 "molecular_function" evidence=ND]
[GO:0003924 "GTPase activity" evidence=IEA;ISO] [GO:0005525 "GTP
binding" evidence=IEA;ISO] [GO:0005634 "nucleus" evidence=ISO]
[GO:0005730 "nucleolus" evidence=IEA;ISO] [GO:0005737 "cytoplasm"
evidence=ISO] [GO:0005786 "signal recognition particle, endoplasmic
reticulum targeting" evidence=IEA;ISO] [GO:0006184 "GTP catabolic
process" evidence=ISO] [GO:0006614 "SRP-dependent cotranslational
protein targeting to membrane" evidence=IEA] [GO:0008144 "drug
binding" evidence=IEA;ISO] [GO:0008150 "biological_process"
evidence=ND] [GO:0008312 "7S RNA binding" evidence=IEA;ISO]
[GO:0016607 "nuclear speck" evidence=IEA] [GO:0019003 "GDP binding"
evidence=IEA;ISO] [GO:0030942 "endoplasmic reticulum signal peptide
binding" evidence=IEA;ISO] [GO:0042493 "response to drug"
evidence=IEA;ISO] [GO:0043021 "ribonucleoprotein complex binding"
evidence=IEA;ISO] [GO:0045047 "protein targeting to ER"
evidence=ISO] InterPro:IPR000897 InterPro:IPR003593
InterPro:IPR004125 InterPro:IPR006325 InterPro:IPR013822
InterPro:IPR022941 Pfam:PF00448 Pfam:PF02881 Pfam:PF02978
PROSITE:PS00300 SMART:SM00382 SMART:SM00962 SMART:SM00963
RGD:621390 GO:GO:0005525 GO:GO:0042493 GO:GO:0016607 GO:GO:0008144
GO:GO:0003924 GO:GO:0043021 GO:GO:0019003 GO:GO:0008312
GO:GO:0006614 SUPFAM:SSF47364 GO:GO:0005786 eggNOG:COG0541
HOGENOM:HOG000036165 KO:K03106 Gene3D:1.10.260.30 SUPFAM:SSF47446
TIGRFAMs:TIGR01425 GO:GO:0030942 CTD:6729 HOVERGEN:HBG061072
OMA:GQQVVKI EMBL:BC079117 IPI:IPI00391089 RefSeq:NP_446323.1
UniGene:Rn.24880 ProteinModelPortal:Q6AYB5 SMR:Q6AYB5 STRING:Q6AYB5
PRIDE:Q6AYB5 Ensembl:ENSRNOT00000049937 GeneID:116650
KEGG:rno:116650 UCSC:RGD:621390 InParanoid:Q6AYB5 NextBio:619403
ArrayExpress:Q6AYB5 Genevestigator:Q6AYB5
GermOnline:ENSRNOG00000032776 Uniprot:Q6AYB5
Length = 504
Score = 351 (128.6 bits), Expect = 4.7e-32, P = 4.7e-32
Identities = 78/264 (29%), Positives = 143/264 (54%)
Query: 1 MMDELKDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAAL 60
+ +E+ V + P ++ V+DA GQ A F ++ + I+TKLDG ++GG AL
Sbjct: 201 LFEEMLQVSNAIQPDNIVYVMDASIGQACEAQAKAFKDKVDVASVIVTKLDGHAKGGGAL 260
Query: 61 SVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQ 120
S + PI +G GE ++D EPF ++LGMGD+ ++K E ++ +D E +
Sbjct: 261 SAVAATKSPIIFIGTGEHIDDFEPFKTQPFISKLLGMGDIEGLIDKVNE-LKLDDNEALI 319
Query: 121 KKIMSANFDFNDFLKQTRTVARMGSMSRVIGMIPGMGK--ITPAQVREAEKSLKIMEAMI 178
+K+ F D +Q + + +MG S+++GMIPG G ++ +E+ LK + ++
Sbjct: 320 EKLKHGQFTLRDMYEQFQNIMKMGPFSQILGMIPGFGTDFMSKGNEQESMARLKKLMTIM 379
Query: 179 EAMTPEEREKPE---LLAESPVRRKRVAQDSGKTEQQVSQLVAQL--F-QMRVRMKNLMG 232
++M +E + + + ++ P R +RVA+ SG + + V +L+ Q F QM +M + G
Sbjct: 380 DSMNDQELDSTDGAKVFSKQPGRIQRVARGSGVSTRDVQELLTQYTKFAQMVKKMGGIKG 439
Query: 233 VMEGGSLPA-LSNLEDALKSEQKA 255
+ +GG + +S + A ++Q A
Sbjct: 440 LFKGGDMSKNVSQSQMAKLNQQMA 463
>UNIPROTKB|Q2T9U1 [details] [associations]
symbol:SRP54 "Signal recognition particle 54 kDa protein"
species:9913 "Bos taurus" [GO:0042493 "response to drug"
evidence=ISS] [GO:0045047 "protein targeting to ER" evidence=ISS]
[GO:0003924 "GTPase activity" evidence=ISS] [GO:0005525 "GTP
binding" evidence=ISS] [GO:0008144 "drug binding" evidence=ISS]
[GO:0008312 "7S RNA binding" evidence=ISS] [GO:0019003 "GDP
binding" evidence=ISS] [GO:0030942 "endoplasmic reticulum signal
peptide binding" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
[GO:0005786 "signal recognition particle, endoplasmic reticulum
targeting" evidence=ISS] [GO:0043021 "ribonucleoprotein complex
binding" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
[GO:0006614 "SRP-dependent cotranslational protein targeting to
membrane" evidence=IEA] InterPro:IPR000897 InterPro:IPR003593
InterPro:IPR004125 InterPro:IPR006325 InterPro:IPR013822
InterPro:IPR022941 Pfam:PF00448 Pfam:PF02881 Pfam:PF02978
PROSITE:PS00300 SMART:SM00382 SMART:SM00962 SMART:SM00963
GO:GO:0005525 GO:GO:0005634 GO:GO:0042493 GO:GO:0008144
GO:GO:0003924 GO:GO:0043021 GO:GO:0019003 GO:GO:0008312
GO:GO:0006614 SUPFAM:SSF47364 GO:GO:0045047 GO:GO:0005786
eggNOG:COG0541 HOGENOM:HOG000036165 KO:K03106 Gene3D:1.10.260.30
SUPFAM:SSF47446 TIGRFAMs:TIGR01425 GO:GO:0030942 EMBL:BC111270
IPI:IPI00698247 RefSeq:NP_001033290.1 UniGene:Bt.36654 HSSP:Q6MTB9
ProteinModelPortal:Q2T9U1 SMR:Q2T9U1 STRING:Q2T9U1 PRIDE:Q2T9U1
Ensembl:ENSBTAT00000025405 GeneID:614017 KEGG:bta:614017 CTD:6729
GeneTree:ENSGT00550000074824 HOVERGEN:HBG061072 InParanoid:Q2T9U1
OMA:GQQVVKI OrthoDB:EOG45MN54 NextBio:20898897 Uniprot:Q2T9U1
Length = 504
Score = 350 (128.3 bits), Expect = 6.0e-32, P = 6.0e-32
Identities = 78/264 (29%), Positives = 143/264 (54%)
Query: 1 MMDELKDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAAL 60
+ +E+ V + P ++ V+DA GQ A F ++ + I+TKLDG ++GG AL
Sbjct: 201 LFEEMLQVANAIQPDNIVYVMDASIGQACEAQAKAFKDKVDVASVIVTKLDGHAKGGGAL 260
Query: 61 SVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQ 120
S + PI +G GE ++D EPF ++LGMGD+ ++K E ++ +D E +
Sbjct: 261 SAVAATKSPIIFIGTGEHIDDFEPFKTQPFISKLLGMGDIEGLIDKVNE-LKLDDNEALI 319
Query: 121 KKIMSANFDFNDFLKQTRTVARMGSMSRVIGMIPGMGK--ITPAQVREAEKSLKIMEAMI 178
+K+ F D +Q + + +MG S+++GMIPG G ++ +E+ LK + ++
Sbjct: 320 EKLKHGQFTLRDMYEQFQNIMKMGPFSQILGMIPGFGTDFMSKGNEQESMARLKKLMTIM 379
Query: 179 EAMTPEEREKPE---LLAESPVRRKRVAQDSGKTEQQVSQLVAQL--F-QMRVRMKNLMG 232
++M +E + + + ++ P R +RVA+ SG + + V +L+ Q F QM +M + G
Sbjct: 380 DSMNDQELDSTDGAKVFSKQPGRIQRVARGSGVSTRDVQELLTQYTKFAQMVKKMGGIKG 439
Query: 233 VMEGGSLPA-LSNLEDALKSEQKA 255
+ +GG + +S + A ++Q A
Sbjct: 440 LFKGGDMSKNVSQSQMAKLNQQMA 463
>UNIPROTKB|P61010 [details] [associations]
symbol:SRP54 "Signal recognition particle 54 kDa protein"
species:9615 "Canis lupus familiaris" [GO:0005829 "cytosol"
evidence=TAS] [GO:0030942 "endoplasmic reticulum signal peptide
binding" evidence=ISS;IMP] [GO:0042493 "response to drug"
evidence=ISS] [GO:0045047 "protein targeting to ER"
evidence=ISS;IMP] [GO:0003924 "GTPase activity" evidence=ISS]
[GO:0005525 "GTP binding" evidence=ISS] [GO:0008144 "drug binding"
evidence=ISS] [GO:0008312 "7S RNA binding" evidence=ISS]
[GO:0019003 "GDP binding" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISS] [GO:0005786 "signal recognition particle, endoplasmic
reticulum targeting" evidence=ISS] [GO:0006616 "SRP-dependent
cotranslational protein targeting to membrane, translocation"
evidence=IDA] [GO:0006617 "SRP-dependent cotranslational protein
targeting to membrane, signal sequence recognition" evidence=IMP]
[GO:0043021 "ribonucleoprotein complex binding" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IEA] Reactome:REACT_86357
InterPro:IPR000897 InterPro:IPR003593 InterPro:IPR004125
InterPro:IPR006325 InterPro:IPR013822 InterPro:IPR022941
Pfam:PF00448 Pfam:PF02881 Pfam:PF02978 PROSITE:PS00300
SMART:SM00382 SMART:SM00962 SMART:SM00963 GO:GO:0005525
GO:GO:0005829 GO:GO:0005634 GO:GO:0042493 GO:GO:0008144
GO:GO:0003924 GO:GO:0043021 GO:GO:0019003 GO:GO:0008312
SUPFAM:SSF47364 GO:GO:0006616 GO:GO:0005786 GO:GO:0006617
eggNOG:COG0541 HOGENOM:HOG000036165 KO:K03106 Gene3D:1.10.260.30
SUPFAM:SSF47446 TIGRFAMs:TIGR01425 Reactome:REACT_146484
GO:GO:0030942 PDB:2J37 PDBsum:2J37 CTD:6729
GeneTree:ENSGT00550000074824 HOVERGEN:HBG061072 OMA:GQQVVKI
OrthoDB:EOG45MN54 EMBL:X16318 PIR:S05197 RefSeq:NP_001003272.1
UniGene:Cfa.3810 PDB:2GO5 PDBsum:2GO5 ProteinModelPortal:P61010
SMR:P61010 STRING:P61010 PRIDE:P61010 Ensembl:ENSCAFT00000021158
GeneID:403953 KEGG:cfa:403953 InParanoid:P61010
EvolutionaryTrace:P61010 NextBio:20817443 Uniprot:P61010
Length = 504
Score = 350 (128.3 bits), Expect = 6.0e-32, P = 6.0e-32
Identities = 78/264 (29%), Positives = 143/264 (54%)
Query: 1 MMDELKDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAAL 60
+ +E+ V + P ++ V+DA GQ A F ++ + I+TKLDG ++GG AL
Sbjct: 201 LFEEMLQVANAIQPDNIVYVMDASIGQACEAQAKAFKDKVDVASVIVTKLDGHAKGGGAL 260
Query: 61 SVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQ 120
S + PI +G GE ++D EPF ++LGMGD+ ++K E ++ +D E +
Sbjct: 261 SAVAATKSPIIFIGTGEHIDDFEPFKTQPFISKLLGMGDIEGLIDKVNE-LKLDDNEALI 319
Query: 121 KKIMSANFDFNDFLKQTRTVARMGSMSRVIGMIPGMGK--ITPAQVREAEKSLKIMEAMI 178
+K+ F D +Q + + +MG S+++GMIPG G ++ +E+ LK + ++
Sbjct: 320 EKLKHGQFTLRDMYEQFQNIMKMGPFSQILGMIPGFGTDFMSKGNEQESMARLKKLMTIM 379
Query: 179 EAMTPEEREKPE---LLAESPVRRKRVAQDSGKTEQQVSQLVAQL--F-QMRVRMKNLMG 232
++M +E + + + ++ P R +RVA+ SG + + V +L+ Q F QM +M + G
Sbjct: 380 DSMNDQELDSTDGAKVFSKQPGRIQRVARGSGVSTRDVQELLTQYTKFAQMVKKMGGIKG 439
Query: 233 VMEGGSLPA-LSNLEDALKSEQKA 255
+ +GG + +S + A ++Q A
Sbjct: 440 LFKGGDMSKNVSQSQMAKLNQQMA 463
>UNIPROTKB|G3V4F7 [details] [associations]
symbol:SRP54 "Signal recognition particle 54 kDa protein"
species:9606 "Homo sapiens" [GO:0003924 "GTPase activity"
evidence=IEA] [GO:0005525 "GTP binding" evidence=IEA] [GO:0006614
"SRP-dependent cotranslational protein targeting to membrane"
evidence=IEA] [GO:0008312 "7S RNA binding" evidence=IEA]
[GO:0048500 "signal recognition particle" evidence=IEA]
InterPro:IPR000897 InterPro:IPR003593 InterPro:IPR004125
InterPro:IPR006325 Pfam:PF00448 Pfam:PF02978 PROSITE:PS00300
SMART:SM00382 SMART:SM00962 GO:GO:0005525 GO:GO:0003924
GO:GO:0006184 GO:GO:0008312 GO:GO:0006614 Gene3D:1.10.260.30
SUPFAM:SSF47446 TIGRFAMs:TIGR01425 GO:GO:0048500 EMBL:AL049776
HGNC:HGNC:11301 ChiTaRS:SRP54 ProteinModelPortal:G3V4F7 SMR:G3V4F7
Ensembl:ENST00000555557 ArrayExpress:G3V4F7 Bgee:G3V4F7
Uniprot:G3V4F7
Length = 440
Score = 350 (128.3 bits), Expect = 6.0e-32, P = 6.0e-32
Identities = 78/264 (29%), Positives = 143/264 (54%)
Query: 1 MMDELKDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAAL 60
+ +E+ V + P ++ V+DA GQ A F ++ + I+TKLDG ++GG AL
Sbjct: 137 LFEEMLQVANAIQPDNIVYVMDASIGQACEAQAKAFKDKVDVASVIVTKLDGHAKGGGAL 196
Query: 61 SVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQ 120
S + PI +G GE ++D EPF ++LGMGD+ ++K E ++ +D E +
Sbjct: 197 SAVAATKSPIIFIGTGEHIDDFEPFKTQPFISKLLGMGDIEGLIDKVNE-LKLDDNEALI 255
Query: 121 KKIMSANFDFNDFLKQTRTVARMGSMSRVIGMIPGMGK--ITPAQVREAEKSLKIMEAMI 178
+K+ F D +Q + + +MG S+++GMIPG G ++ +E+ LK + ++
Sbjct: 256 EKLKHGQFTLRDMYEQFQNIMKMGPFSQILGMIPGFGTDFMSKGNEQESMARLKKLMTIM 315
Query: 179 EAMTPEEREKPE---LLAESPVRRKRVAQDSGKTEQQVSQLVAQL--F-QMRVRMKNLMG 232
++M +E + + + ++ P R +RVA+ SG + + V +L+ Q F QM +M + G
Sbjct: 316 DSMNDQELDSTDGAKVFSKQPGRIQRVARGSGVSTRDVQELLTQYTKFAQMVKKMGGIKG 375
Query: 233 VMEGGSLPA-LSNLEDALKSEQKA 255
+ +GG + +S + A ++Q A
Sbjct: 376 LFKGGDMSKNVSQSQMAKLNQQMA 399
>UNIPROTKB|P61011 [details] [associations]
symbol:SRP54 "Signal recognition particle 54 kDa protein"
species:9606 "Homo sapiens" [GO:0016607 "nuclear speck"
evidence=IEA] [GO:0005634 "nucleus" evidence=IDA] [GO:0008144 "drug
binding" evidence=IDA] [GO:0006617 "SRP-dependent cotranslational
protein targeting to membrane, signal sequence recognition"
evidence=ISS] [GO:0030942 "endoplasmic reticulum signal peptide
binding" evidence=IDA] [GO:0008312 "7S RNA binding" evidence=IDA]
[GO:0006616 "SRP-dependent cotranslational protein targeting to
membrane, translocation" evidence=ISS] [GO:0005525 "GTP binding"
evidence=IDA] [GO:0019003 "GDP binding" evidence=IDA] [GO:0003924
"GTPase activity" evidence=IDA] [GO:0005786 "signal recognition
particle, endoplasmic reticulum targeting" evidence=IDA]
[GO:0042493 "response to drug" evidence=IDA] [GO:0045047 "protein
targeting to ER" evidence=IMP] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0006614
"SRP-dependent cotranslational protein targeting to membrane"
evidence=IC;TAS] [GO:0043021 "ribonucleoprotein complex binding"
evidence=IDA] [GO:0005829 "cytosol" evidence=TAS] [GO:0006412
"translation" evidence=TAS] [GO:0010467 "gene expression"
evidence=TAS] [GO:0044267 "cellular protein metabolic process"
evidence=TAS] [GO:0006184 "GTP catabolic process" evidence=IDA]
Reactome:REACT_71 Reactome:REACT_17015 InterPro:IPR000897
InterPro:IPR003593 InterPro:IPR004125 InterPro:IPR006325
InterPro:IPR013822 InterPro:IPR022941 Pfam:PF00448 Pfam:PF02881
Pfam:PF02978 PROSITE:PS00300 SMART:SM00382 SMART:SM00962
SMART:SM00963 GO:GO:0005525 GO:GO:0005829 GO:GO:0005730
GO:GO:0042493 GO:GO:0006412 GO:GO:0016607 GO:GO:0008144
GO:GO:0003924 GO:GO:0006184 GO:GO:0043021 GO:GO:0019003
TCDB:3.A.5.9.1 GO:GO:0008312 SUPFAM:SSF47364 GO:GO:0006616
GO:GO:0005786 GO:GO:0006617 eggNOG:COG0541 HOGENOM:HOG000036165
KO:K03106 Gene3D:1.10.260.30 SUPFAM:SSF47446 TIGRFAMs:TIGR01425
GO:GO:0030942 PDB:1MFQ PDBsum:1MFQ CTD:6729 HOVERGEN:HBG061072
OMA:GQQVVKI OrthoDB:EOG45MN54 EMBL:X86373 EMBL:U51920 EMBL:AK300824
EMBL:AK312853 EMBL:AL049776 EMBL:BC000652 EMBL:BC003389
IPI:IPI00009822 IPI:IPI00929464 PIR:S54143 RefSeq:NP_001139754.1
RefSeq:NP_003127.1 UniGene:Hs.167535 PDB:1QB2 PDBsum:1QB2
ProteinModelPortal:P61011 SMR:P61011 IntAct:P61011 STRING:P61011
PhosphoSite:P61011 DMDM:46577650 PaxDb:P61011 PRIDE:P61011
DNASU:6729 Ensembl:ENST00000216774 Ensembl:ENST00000546080
Ensembl:ENST00000556994 GeneID:6729 KEGG:hsa:6729 UCSC:uc001wso.3
GeneCards:GC14P035452 HGNC:HGNC:11301 HPA:HPA048977 MIM:604857
neXtProt:NX_P61011 PharmGKB:PA36125 InParanoid:P61011
PhylomeDB:P61011 ChiTaRS:SRP54 EvolutionaryTrace:P61011
GenomeRNAi:6729 NextBio:26248 ArrayExpress:P61011 Bgee:P61011
CleanEx:HS_SRP54 Genevestigator:P61011 GermOnline:ENSG00000100883
Uniprot:P61011
Length = 504
Score = 350 (128.3 bits), Expect = 6.0e-32, P = 6.0e-32
Identities = 78/264 (29%), Positives = 143/264 (54%)
Query: 1 MMDELKDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAAL 60
+ +E+ V + P ++ V+DA GQ A F ++ + I+TKLDG ++GG AL
Sbjct: 201 LFEEMLQVANAIQPDNIVYVMDASIGQACEAQAKAFKDKVDVASVIVTKLDGHAKGGGAL 260
Query: 61 SVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQ 120
S + PI +G GE ++D EPF ++LGMGD+ ++K E ++ +D E +
Sbjct: 261 SAVAATKSPIIFIGTGEHIDDFEPFKTQPFISKLLGMGDIEGLIDKVNE-LKLDDNEALI 319
Query: 121 KKIMSANFDFNDFLKQTRTVARMGSMSRVIGMIPGMGK--ITPAQVREAEKSLKIMEAMI 178
+K+ F D +Q + + +MG S+++GMIPG G ++ +E+ LK + ++
Sbjct: 320 EKLKHGQFTLRDMYEQFQNIMKMGPFSQILGMIPGFGTDFMSKGNEQESMARLKKLMTIM 379
Query: 179 EAMTPEEREKPE---LLAESPVRRKRVAQDSGKTEQQVSQLVAQL--F-QMRVRMKNLMG 232
++M +E + + + ++ P R +RVA+ SG + + V +L+ Q F QM +M + G
Sbjct: 380 DSMNDQELDSTDGAKVFSKQPGRIQRVARGSGVSTRDVQELLTQYTKFAQMVKKMGGIKG 439
Query: 233 VMEGGSLPA-LSNLEDALKSEQKA 255
+ +GG + +S + A ++Q A
Sbjct: 440 LFKGGDMSKNVSQSQMAKLNQQMA 463
>UNIPROTKB|F2Z5M9 [details] [associations]
symbol:SRP54 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0043021 "ribonucleoprotein complex binding"
evidence=IEA] [GO:0042493 "response to drug" evidence=IEA]
[GO:0030942 "endoplasmic reticulum signal peptide binding"
evidence=IEA] [GO:0019003 "GDP binding" evidence=IEA] [GO:0008144
"drug binding" evidence=IEA] [GO:0005786 "signal recognition
particle, endoplasmic reticulum targeting" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IEA] [GO:0008312 "7S RNA binding"
evidence=IEA] [GO:0006614 "SRP-dependent cotranslational protein
targeting to membrane" evidence=IEA] [GO:0005525 "GTP binding"
evidence=IEA] [GO:0003924 "GTPase activity" evidence=IEA]
HAMAP:MF_00306 InterPro:IPR000897 InterPro:IPR003593
InterPro:IPR004125 InterPro:IPR006325 InterPro:IPR013822
InterPro:IPR022941 Pfam:PF00448 Pfam:PF02881 Pfam:PF02978
PROSITE:PS00300 SMART:SM00382 SMART:SM00962 SMART:SM00963
GO:GO:0005525 GO:GO:0005634 GO:GO:0042493 GO:GO:0008144
GO:GO:0003924 GO:GO:0043021 GO:GO:0019003 GO:GO:0008312
GO:GO:0006614 SUPFAM:SSF47364 GO:GO:0005786 KO:K03106
Gene3D:1.10.260.30 SUPFAM:SSF47446 TIGRFAMs:TIGR01425 GO:GO:0030942
CTD:6729 GeneTree:ENSGT00550000074824 OMA:GQQVVKI EMBL:CU469145
RefSeq:XP_001927834.3 ProteinModelPortal:F2Z5M9 SMR:F2Z5M9
PRIDE:F2Z5M9 Ensembl:ENSSSCT00000002187 GeneID:100154361
KEGG:ssc:100154361 Uniprot:F2Z5M9
Length = 504
Score = 350 (128.3 bits), Expect = 6.0e-32, P = 6.0e-32
Identities = 78/264 (29%), Positives = 143/264 (54%)
Query: 1 MMDELKDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAAL 60
+ +E+ V + P ++ V+DA GQ A F ++ + I+TKLDG ++GG AL
Sbjct: 201 LFEEMLQVANAIQPDNIVYVMDASIGQACEAQAKAFKDKVDVASVIVTKLDGHAKGGGAL 260
Query: 61 SVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQ 120
S + PI +G GE ++D EPF ++LGMGD+ ++K E ++ +D E +
Sbjct: 261 SAVAATKSPIIFIGTGEHIDDFEPFKTQPFISKLLGMGDIEGLIDKVNE-LKLDDNEALI 319
Query: 121 KKIMSANFDFNDFLKQTRTVARMGSMSRVIGMIPGMGK--ITPAQVREAEKSLKIMEAMI 178
+K+ F D +Q + + +MG S+++GMIPG G ++ +E+ LK + ++
Sbjct: 320 EKLKHGQFTLRDMYEQFQNIMKMGPFSQILGMIPGFGTDFMSKGNEQESMARLKKLMTIM 379
Query: 179 EAMTPEEREKPE---LLAESPVRRKRVAQDSGKTEQQVSQLVAQL--F-QMRVRMKNLMG 232
++M +E + + + ++ P R +RVA+ SG + + V +L+ Q F QM +M + G
Sbjct: 380 DSMNDQELDSTDGAKVFSKQPGRIQRVARGSGVSTRDVQELLTQYTKFAQMVKKMGGIKG 439
Query: 233 VMEGGSLPA-LSNLEDALKSEQKA 255
+ +GG + +S + A ++Q A
Sbjct: 440 LFKGGDMSKNVSQSQMAKLNQQMA 463
>UNIPROTKB|Q4R965 [details] [associations]
symbol:SRP54 "Signal recognition particle 54 kDa protein"
species:9541 "Macaca fascicularis" [GO:0005525 "GTP binding"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISS] [GO:0005786
"signal recognition particle, endoplasmic reticulum targeting"
evidence=ISS] [GO:0006184 "GTP catabolic process" evidence=ISS]
[GO:0008144 "drug binding" evidence=ISS] [GO:0008312 "7S RNA
binding" evidence=ISS] [GO:0019003 "GDP binding" evidence=ISS]
[GO:0030942 "endoplasmic reticulum signal peptide binding"
evidence=ISS] [GO:0042493 "response to drug" evidence=ISS]
[GO:0045047 "protein targeting to ER" evidence=ISS] [GO:0003924
"GTPase activity" evidence=ISS] InterPro:IPR000897
InterPro:IPR003593 InterPro:IPR004125 InterPro:IPR006325
InterPro:IPR013822 InterPro:IPR022941 Pfam:PF00448 Pfam:PF02881
Pfam:PF02978 PROSITE:PS00300 SMART:SM00382 SMART:SM00962
SMART:SM00963 GO:GO:0005525 GO:GO:0005634 GO:GO:0042493
GO:GO:0016607 GO:GO:0008144 GO:GO:0003924 GO:GO:0006184
GO:GO:0019003 GO:GO:0008312 GO:GO:0006614 SUPFAM:SSF47364
GO:GO:0045047 GO:GO:0005786 Gene3D:1.10.260.30 SUPFAM:SSF47446
TIGRFAMs:TIGR01425 GO:GO:0030942 HOVERGEN:HBG061072 EMBL:AB168231
ProteinModelPortal:Q4R965 SMR:Q4R965 PRIDE:Q4R965 Uniprot:Q4R965
Length = 504
Score = 350 (128.3 bits), Expect = 6.0e-32, P = 6.0e-32
Identities = 78/264 (29%), Positives = 143/264 (54%)
Query: 1 MMDELKDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAAL 60
+ +E+ V + P ++ V+DA GQ A F ++ + I+TKLDG ++GG AL
Sbjct: 201 LFEEMLQVANAIQPDNIVYVMDASIGQACEAQAKAFKDKVDVASVIVTKLDGHAKGGGAL 260
Query: 61 SVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQ 120
S + PI +G GE ++D EPF ++LGMGD+ ++K E ++ +D E +
Sbjct: 261 SAVAATKSPIIFIGTGEHIDDFEPFKTQPFISKLLGMGDIEGLIDKVNE-LKLDDNEALI 319
Query: 121 KKIMSANFDFNDFLKQTRTVARMGSMSRVIGMIPGMGK--ITPAQVREAEKSLKIMEAMI 178
+K+ F D +Q + + +MG S+++GMIPG G ++ +E+ LK + ++
Sbjct: 320 EKLKHGQFTLRDMYEQFQNIMKMGPFSQILGMIPGFGTDFMSKGNEQESMARLKKLMTIM 379
Query: 179 EAMTPEEREKPE---LLAESPVRRKRVAQDSGKTEQQVSQLVAQL--F-QMRVRMKNLMG 232
++M +E + + + ++ P R +RVA+ SG + + V +L+ Q F QM +M + G
Sbjct: 380 DSMNDQELDSTDGAKVFSKQPGRIQRVARGSGVSTRDVQELLTQYTKFAQMVKKMGGIKG 439
Query: 233 VMEGGSLPA-LSNLEDALKSEQKA 255
+ +GG + +S + A ++Q A
Sbjct: 440 LFKGGDMSKNVSQSQMAKLNQQMA 463
>UNIPROTKB|Q5R4R6 [details] [associations]
symbol:SRP54 "Signal recognition particle 54 kDa protein"
species:9601 "Pongo abelii" [GO:0005525 "GTP binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISS] [GO:0005786 "signal recognition
particle, endoplasmic reticulum targeting" evidence=ISS]
[GO:0006184 "GTP catabolic process" evidence=ISS] [GO:0008144 "drug
binding" evidence=ISS] [GO:0008312 "7S RNA binding" evidence=ISS]
[GO:0019003 "GDP binding" evidence=ISS] [GO:0030942 "endoplasmic
reticulum signal peptide binding" evidence=ISS] [GO:0042493
"response to drug" evidence=ISS] [GO:0045047 "protein targeting to
ER" evidence=ISS] [GO:0003924 "GTPase activity" evidence=ISS]
InterPro:IPR000897 InterPro:IPR003593 InterPro:IPR004125
InterPro:IPR006325 InterPro:IPR013822 InterPro:IPR022941
Pfam:PF00448 Pfam:PF02881 Pfam:PF02978 PROSITE:PS00300
SMART:SM00382 SMART:SM00962 SMART:SM00963 GO:GO:0005525
GO:GO:0005634 GO:GO:0042493 GO:GO:0016607 GO:GO:0008144
GO:GO:0003924 GO:GO:0006184 GO:GO:0019003 GO:GO:0008312
GO:GO:0006614 SUPFAM:SSF47364 GO:GO:0045047 GO:GO:0005786 KO:K03106
Gene3D:1.10.260.30 SUPFAM:SSF47446 TIGRFAMs:TIGR01425 GO:GO:0030942
CTD:6729 HOVERGEN:HBG061072 EMBL:CR861178 RefSeq:NP_001126912.1
UniGene:Pab.3814 ProteinModelPortal:Q5R4R6 SMR:Q5R4R6 PRIDE:Q5R4R6
GeneID:100173929 KEGG:pon:100173929 InParanoid:Q5R4R6
Uniprot:Q5R4R6
Length = 504
Score = 350 (128.3 bits), Expect = 6.0e-32, P = 6.0e-32
Identities = 78/264 (29%), Positives = 143/264 (54%)
Query: 1 MMDELKDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAAL 60
+ +E+ V + P ++ V+DA GQ A F ++ + I+TKLDG ++GG AL
Sbjct: 201 LFEEMLQVANAIQPDNIVYVMDASIGQACEAQAKAFKDKVDVASVIVTKLDGHAKGGGAL 260
Query: 61 SVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQ 120
S + PI +G GE ++D EPF ++LGMGD+ ++K E ++ +D E +
Sbjct: 261 SAVAATKSPIIFIGTGEHIDDFEPFKTQPFISKLLGMGDIEGLIDKVNE-LKLDDNEALI 319
Query: 121 KKIMSANFDFNDFLKQTRTVARMGSMSRVIGMIPGMGK--ITPAQVREAEKSLKIMEAMI 178
+K+ F D +Q + + +MG S+++GMIPG G ++ +E+ LK + ++
Sbjct: 320 EKLKHGQFTLRDMYEQFQNIMKMGPFSQILGMIPGFGTDFMSKGNEQESMARLKKLMTIM 379
Query: 179 EAMTPEEREKPE---LLAESPVRRKRVAQDSGKTEQQVSQLVAQL--F-QMRVRMKNLMG 232
++M +E + + + ++ P R +RVA+ SG + + V +L+ Q F QM +M + G
Sbjct: 380 DSMNDQELDSTDGAKVFSKQPGRIQRVARGSGVSTRDVQELLTQYTKFAQMVKKMGGIKG 439
Query: 233 VMEGGSLPA-LSNLEDALKSEQKA 255
+ +GG + +S + A ++Q A
Sbjct: 440 LFKGGDMSKNVSQSQMAKLNQQMA 463
>WB|WBGene00009012 [details] [associations]
symbol:F21D5.7 species:6239 "Caenorhabditis elegans"
[GO:0005525 "GTP binding" evidence=IEA] [GO:0006614 "SRP-dependent
cotranslational protein targeting to membrane" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0008312 "7S
RNA binding" evidence=IEA] [GO:0048500 "signal recognition
particle" evidence=IEA] [GO:0003924 "GTPase activity" evidence=IEA]
[GO:0002119 "nematode larval development" evidence=IMP] [GO:0000003
"reproduction" evidence=IMP] [GO:0006915 "apoptotic process"
evidence=IMP] HAMAP:MF_00306 InterPro:IPR000897 InterPro:IPR003593
InterPro:IPR004125 InterPro:IPR006325 InterPro:IPR013822
InterPro:IPR022941 Pfam:PF00448 Pfam:PF02881 Pfam:PF02978
PROSITE:PS00300 SMART:SM00382 SMART:SM00962 SMART:SM00963
GO:GO:0005525 GO:GO:0006915 GO:GO:0002119 GO:GO:0003924
GO:GO:0006184 GO:GO:0000003 GO:GO:0008312 GO:GO:0006614
SUPFAM:SSF47364 EMBL:Z68161 KO:K03106 Gene3D:1.10.260.30
SUPFAM:SSF47446 TIGRFAMs:TIGR01425 GeneTree:ENSGT00550000074824
OMA:GQQVVKI GO:GO:0048500 EMBL:Z54271 PIR:A88763 PIR:T21140
RefSeq:NP_501507.1 HSSP:P70722 ProteinModelPortal:G5EE80 SMR:G5EE80
EnsemblMetazoa:F21D5.7.1 EnsemblMetazoa:F21D5.7.2 GeneID:259584
KEGG:cel:CELE_F21D5.7 CTD:259584 WormBase:F21D5.7 NextBio:952170
Uniprot:G5EE80
Length = 496
Score = 345 (126.5 bits), Expect = 2.0e-31, P = 2.0e-31
Identities = 76/241 (31%), Positives = 130/241 (53%)
Query: 1 MMDELKDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAAL 60
+ +E+ V + P V+ V+DA GQ A F+ + + I+TKLD ++GG AL
Sbjct: 201 LFEEMLQVSNAVTPDNVVFVMDASIGQACEAQARAFSQTVDVASVIITKLDSHAKGGGAL 260
Query: 61 SVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQ 120
S V+ P+ +G GE ++D E F P ++LGMGD+ V+ ++ Q D +E+
Sbjct: 261 SAVAVTKSPVIFIGTGEHIDDFEIFKPKSFVQKLLGMGDIAGLVDMVNDIGIQ-DNKELV 319
Query: 121 KKIMSANFDFNDFLKQTRTVARMGSMSRVIGMIPGMGK--ITPAQVREAEKSLKIMEAMI 178
++ F D +Q + + +MG S+++GMIPG G +T +E+ LK M ++
Sbjct: 320 GRLKQGQFTLRDMYEQFQNIMKMGPFSQIMGMIPGFGSEFMTKGNEQESVNRLKRMMTVM 379
Query: 179 EAMTPEEREKP---ELLAESPVRRKRVAQDSGKTEQQVSQLVAQLFQMRVRMKNLMGVME 235
++M+ +E + P EL + P R RVA+ SG +Q+V L+AQ + +K + G ++
Sbjct: 380 DSMSDKELDHPKASELFTKEPNRVARVARGSGSHQQEVRDLLAQYKKFSDVVKKI-GSIK 438
Query: 236 G 236
G
Sbjct: 439 G 439
>FB|FBgn0010747 [details] [associations]
symbol:Srp54k "Signal recognition particle protein 54k"
species:7227 "Drosophila melanogaster" [GO:0005786 "signal
recognition particle, endoplasmic reticulum targeting"
evidence=ISS] [GO:0006614 "SRP-dependent cotranslational protein
targeting to membrane" evidence=ISS] [GO:0008312 "7S RNA binding"
evidence=ISS] [GO:0006617 "SRP-dependent cotranslational protein
targeting to membrane, signal sequence recognition" evidence=ISS]
[GO:0005048 "signal sequence binding" evidence=ISS] [GO:0005525
"GTP binding" evidence=IEA] [GO:0003924 "GTPase activity"
evidence=IEA] HAMAP:MF_00306 InterPro:IPR000897 InterPro:IPR003593
InterPro:IPR004125 InterPro:IPR006325 InterPro:IPR013822
InterPro:IPR022941 Pfam:PF00448 Pfam:PF02881 Pfam:PF02978
PROSITE:PS00300 SMART:SM00382 SMART:SM00962 SMART:SM00963
GO:GO:0005525 GO:GO:0003924 GO:GO:0006184 GO:GO:0005048
GO:GO:0008312 SUPFAM:SSF47364 GO:GO:0005786 GO:GO:0006617
eggNOG:COG0541 Gene3D:1.10.260.30 SUPFAM:SSF47446
TIGRFAMs:TIGR01425 HSSP:P70722 EMBL:AY094660
ProteinModelPortal:Q8T3P8 SMR:Q8T3P8 STRING:Q8T3P8 PaxDb:Q8T3P8
PRIDE:Q8T3P8 FlyBase:FBgn0010747 InParanoid:Q8T3P8
OrthoDB:EOG44TMQ3 ChiTaRS:Srp54k ArrayExpress:Q8T3P8 Bgee:Q8T3P8
Uniprot:Q8T3P8
Length = 569
Score = 346 (126.9 bits), Expect = 4.7e-31, P = 4.7e-31
Identities = 75/238 (31%), Positives = 131/238 (55%)
Query: 1 MMDELKDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAAL 60
+ +E+ V ++P ++ V+DA GQ A F ++ I I+TKLDG ++GG AL
Sbjct: 201 LFEEMLAVSNAVSPDNIIFVMDATIGQACEAQAKAFKDKVDIGSVIITKLDGHAKGGGAL 260
Query: 61 SVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQ 120
S + PI +G GE ++DLEPF ++LGMGD+ ++K E ++ + +E+
Sbjct: 261 SAVAATQSPIIFIGTGEHIDDLEPFKTKPFVSKLLGMGDIEGLIDKVNE-LKLDGNDELL 319
Query: 121 KKIMSANFDFNDFLKQTRTVARMGSMSRVIGMIPGMGK--ITPAQVREAEKSLKIMEAMI 178
+KI +F D +Q + + +MG S+ + MIPG + +T +E+ +K M M+
Sbjct: 320 EKIKHGHFTIRDMYEQFQNIMKMGPFSQFMNMIPGFSQDFMTKGGEQESMARVKRMMTMM 379
Query: 179 EAMTPEE---REKPELLAESPVRRKRVAQDSGKTEQQVSQLVAQLFQMRVRMKNLMGV 233
++M+ E R+ +L ++ P R RVAQ +G E++V +L+A + +K + GV
Sbjct: 380 DSMSDNELDNRDGAKLFSKQPNRCVRVAQGAGVMEREVKELIAHYTKFSAVVKKMGGV 437
>TAIR|locus:2028563 [details] [associations]
symbol:AT1G48900 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003729 "mRNA
binding" evidence=ISS] [GO:0005525 "GTP binding" evidence=IEA;ISS]
[GO:0005737 "cytoplasm" evidence=ISM] [GO:0005786 "signal
recognition particle, endoplasmic reticulum targeting"
evidence=ISS] [GO:0006614 "SRP-dependent cotranslational protein
targeting to membrane" evidence=IEA] [GO:0006617 "SRP-dependent
cotranslational protein targeting to membrane, signal sequence
recognition" evidence=ISS] [GO:0008312 "7S RNA binding"
evidence=IEA;ISS] [GO:0017111 "nucleoside-triphosphatase activity"
evidence=IEA] [GO:0048500 "signal recognition particle"
evidence=IEA] [GO:0005829 "cytosol" evidence=IDA] [GO:0010267
"production of ta-siRNAs involved in RNA interference"
evidence=RCA] [GO:0035196 "production of miRNAs involved in gene
silencing by miRNA" evidence=RCA] [GO:0051607 "defense response to
virus" evidence=RCA] InterPro:IPR000897 InterPro:IPR003593
InterPro:IPR004125 InterPro:IPR006325 InterPro:IPR013822
InterPro:IPR022941 Pfam:PF00448 Pfam:PF02881 Pfam:PF02978
PROSITE:PS00300 SMART:SM00382 SMART:SM00962 SMART:SM00963
GO:GO:0005525 EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005829
GO:GO:0003924 GO:GO:0006184 EMBL:AC084414 GO:GO:0008312
GO:GO:0006614 SUPFAM:SSF47364 GO:GO:0005786 eggNOG:COG0541
HOGENOM:HOG000036165 KO:K03106 ProtClustDB:CLSN2686827
Gene3D:1.10.260.30 SUPFAM:SSF47446 TIGRFAMs:TIGR01425 EMBL:U12127
EMBL:AY054273 EMBL:AY052331 EMBL:AF446864 IPI:IPI00531486
PIR:G96526 RefSeq:NP_564535.1 UniGene:At.23838
ProteinModelPortal:P49967 SMR:P49967 STRING:P49967 PaxDb:P49967
PRIDE:P49967 EnsemblPlants:AT1G48900.1 GeneID:841312
KEGG:ath:AT1G48900 GeneFarm:1889 TAIR:At1g48900 InParanoid:P49967
OMA:NVQHMSK PhylomeDB:P49967 Genevestigator:P49967
GermOnline:AT1G48900 Uniprot:P49967
Length = 495
Score = 330 (121.2 bits), Expect = 1.1e-29, P = 1.1e-29
Identities = 77/264 (29%), Positives = 138/264 (52%)
Query: 1 MMDELKDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAAL 60
+ +E++ V P V+ V+D+ GQ A F + + I+TK+DG ++GG AL
Sbjct: 201 LFEEMRQVAEATKPDLVIFVMDSSIGQAAFDQAQAFKQSVAVGAVIITKMDGHAKGGGAL 260
Query: 61 SVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQ 120
S + P+ +G GE M++ E F R+LGMGD FV+K QEV+ ++ E+
Sbjct: 261 SAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFVDKLQEVVPKDQQPELL 320
Query: 121 KKIMSANFDFNDFLKQTRTVARMGSMSRVIGMIPGMG-KITP-AQVREAEKSLKIMEAMI 178
+K+ NF Q + + MG + V M+PG+ ++ P +E++ +K M+
Sbjct: 321 EKLSQGNFTLRIMYDQFQNILNMGPLKEVFSMLPGISAEMMPKGHEKESQAKIKRYMTMM 380
Query: 179 EAMTPEEREK--PELLAESPVRRKRVAQDSGKTEQQVSQLVAQ---LFQMRVRMKNLMGV 233
++MT +E + P++ ES R R+A+ SG+ ++V +++ + L ++ +MK L +
Sbjct: 381 DSMTNDELDSSNPKVFNES--RMMRIARGSGRQVREVMEMLEEYKRLAKIWSKMKGLK-I 437
Query: 234 MEGGSLPALSNLEDALKSEQKAPP 257
+ G + ALS +A + PP
Sbjct: 438 PKNGDMSALSRNMNAQHMSKVLPP 461
>GENEDB_PFALCIPARUM|PF14_0477 [details] [associations]
symbol:PF14_0477 "signal recognition particle
54 kDa protein, putative" species:5833 "Plasmodium falciparum"
[GO:0005048 "signal sequence binding" evidence=ISS] HAMAP:MF_00306
InterPro:IPR000897 InterPro:IPR003593 InterPro:IPR004125
InterPro:IPR006325 InterPro:IPR013822 InterPro:IPR022941
Pfam:PF00448 Pfam:PF02881 Pfam:PF02978 PROSITE:PS00300
SMART:SM00382 SMART:SM00962 SMART:SM00963 GO:GO:0005525
GO:GO:0003924 GO:GO:0006184 EMBL:AE014187 GO:GO:0005048
GO:GO:0008312 GO:GO:0006614 SUPFAM:SSF47364 HOGENOM:HOG000036165
KO:K03106 Gene3D:1.10.260.30 SUPFAM:SSF47446 TIGRFAMs:TIGR01425
GO:GO:0048500 HSSP:P70722 RefSeq:XP_001348651.1
ProteinModelPortal:Q8IKX4 EnsemblProtists:PF14_0477:mRNA
GeneID:812059 KEGG:pfa:PF14_0477 EuPathDB:PlasmoDB:PF3D7_1450100
OMA:QMANALP ProtClustDB:CLSZ2514463 Uniprot:Q8IKX4
Length = 500
Score = 315 (115.9 bits), Expect = 6.7e-28, P = 6.7e-28
Identities = 77/250 (30%), Positives = 128/250 (51%)
Query: 1 MMDELKDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAAL 60
+ +E+ V+ + P E++ V+D+ GQ F + + I+TK+DG ++GG AL
Sbjct: 201 LFEEMIQVENSIQPEEIIFVIDSHIGQSCHDQAMAFKNSVSLGSIIITKIDGHAKGGGAL 260
Query: 61 SVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQ 120
S +G PI +G GE + D E F R+LG+GD+ V +EV+ + E+
Sbjct: 261 SAVAATGCPITFIGTGEHVNDFEKFEAKSFVSRLLGLGDISGLVSTIKEVIDIDKQPELM 320
Query: 121 KKIMSANFDFNDFLKQTRTVARMGSMSRVIGMIPGMGK--ITPAQVREAEKSLKIMEAMI 178
++ F D Q + V +MGS+S+V+ MIPG G I+ +E +K ++
Sbjct: 321 NRLSKGKFVLRDMYDQFQNVFKMGSLSKVMSMIPGFGNNLISKGTEKEGIDKIKKFMVIM 380
Query: 179 EAMTPEEREKPELLAESPVRRKRVAQDSGKTEQQVSQLVAQ---LFQMRVRMKNLMGVME 235
++MT EE + + L +S R R+ + SG Q + +L+ Q L +M V+M L G+ E
Sbjct: 381 DSMTNEELDCIKPLNDS--RCLRIVKGSGTRLQDIKELLEQFKFLQKMVVKMGKL-GLRE 437
Query: 236 GGSLPALSNL 245
+SNL
Sbjct: 438 NN----ISNL 443
>UNIPROTKB|Q8IKX4 [details] [associations]
symbol:PF14_0477 "Signal recognition particle SRP54,
putative" species:36329 "Plasmodium falciparum 3D7" [GO:0005048
"signal sequence binding" evidence=ISS] HAMAP:MF_00306
InterPro:IPR000897 InterPro:IPR003593 InterPro:IPR004125
InterPro:IPR006325 InterPro:IPR013822 InterPro:IPR022941
Pfam:PF00448 Pfam:PF02881 Pfam:PF02978 PROSITE:PS00300
SMART:SM00382 SMART:SM00962 SMART:SM00963 GO:GO:0005525
GO:GO:0003924 GO:GO:0006184 EMBL:AE014187 GO:GO:0005048
GO:GO:0008312 GO:GO:0006614 SUPFAM:SSF47364 HOGENOM:HOG000036165
KO:K03106 Gene3D:1.10.260.30 SUPFAM:SSF47446 TIGRFAMs:TIGR01425
GO:GO:0048500 HSSP:P70722 RefSeq:XP_001348651.1
ProteinModelPortal:Q8IKX4 EnsemblProtists:PF14_0477:mRNA
GeneID:812059 KEGG:pfa:PF14_0477 EuPathDB:PlasmoDB:PF3D7_1450100
OMA:QMANALP ProtClustDB:CLSZ2514463 Uniprot:Q8IKX4
Length = 500
Score = 315 (115.9 bits), Expect = 6.7e-28, P = 6.7e-28
Identities = 77/250 (30%), Positives = 128/250 (51%)
Query: 1 MMDELKDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAAL 60
+ +E+ V+ + P E++ V+D+ GQ F + + I+TK+DG ++GG AL
Sbjct: 201 LFEEMIQVENSIQPEEIIFVIDSHIGQSCHDQAMAFKNSVSLGSIIITKIDGHAKGGGAL 260
Query: 61 SVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQ 120
S +G PI +G GE + D E F R+LG+GD+ V +EV+ + E+
Sbjct: 261 SAVAATGCPITFIGTGEHVNDFEKFEAKSFVSRLLGLGDISGLVSTIKEVIDIDKQPELM 320
Query: 121 KKIMSANFDFNDFLKQTRTVARMGSMSRVIGMIPGMGK--ITPAQVREAEKSLKIMEAMI 178
++ F D Q + V +MGS+S+V+ MIPG G I+ +E +K ++
Sbjct: 321 NRLSKGKFVLRDMYDQFQNVFKMGSLSKVMSMIPGFGNNLISKGTEKEGIDKIKKFMVIM 380
Query: 179 EAMTPEEREKPELLAESPVRRKRVAQDSGKTEQQVSQLVAQ---LFQMRVRMKNLMGVME 235
++MT EE + + L +S R R+ + SG Q + +L+ Q L +M V+M L G+ E
Sbjct: 381 DSMTNEELDCIKPLNDS--RCLRIVKGSGTRLQDIKELLEQFKFLQKMVVKMGKL-GLRE 437
Query: 236 GGSLPALSNL 245
+SNL
Sbjct: 438 NN----ISNL 443
>TAIR|locus:2157809 [details] [associations]
symbol:AT5G49500 "AT5G49500" species:3702 "Arabidopsis
thaliana" [GO:0003729 "mRNA binding" evidence=ISS] [GO:0005525 "GTP
binding" evidence=IEA;ISS] [GO:0005737 "cytoplasm" evidence=ISM]
[GO:0005786 "signal recognition particle, endoplasmic reticulum
targeting" evidence=ISS] [GO:0006614 "SRP-dependent cotranslational
protein targeting to membrane" evidence=IEA] [GO:0006617
"SRP-dependent cotranslational protein targeting to membrane,
signal sequence recognition" evidence=ISS] [GO:0008312 "7S RNA
binding" evidence=IEA;ISS] [GO:0048500 "signal recognition
particle" evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0010267 "production of ta-siRNAs involved in RNA interference"
evidence=RCA] [GO:0035196 "production of miRNAs involved in gene
silencing by miRNA" evidence=RCA] [GO:0051607 "defense response to
virus" evidence=RCA] InterPro:IPR000897 InterPro:IPR004125
InterPro:IPR006325 InterPro:IPR013822 InterPro:IPR022941
Pfam:PF00448 Pfam:PF02881 Pfam:PF02978 PROSITE:PS00300
SMART:SM00962 SMART:SM00963 GO:GO:0005525 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0003924 GO:GO:0006184 EMBL:AB023033
GO:GO:0008312 GO:GO:0006614 SUPFAM:SSF47364 GO:GO:0005786
eggNOG:COG0541 HOGENOM:HOG000036165 KO:K03106
ProtClustDB:CLSN2686827 Gene3D:1.10.260.30 SUPFAM:SSF47446
TIGRFAMs:TIGR01425 EMBL:U12126 IPI:IPI00534798 RefSeq:NP_199761.1
UniGene:At.29781 ProteinModelPortal:P49966 SMR:P49966 IntAct:P49966
STRING:P49966 PRIDE:P49966 GeneID:835010 KEGG:ath:AT5G49500
TAIR:At5g49500 InParanoid:P49966 Genevestigator:P49966
GermOnline:AT5G49500 Uniprot:P49966
Length = 497
Score = 308 (113.5 bits), Expect = 4.0e-27, P = 4.0e-27
Identities = 70/262 (26%), Positives = 134/262 (51%)
Query: 1 MMDELKDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAAL 60
+ +E++ + P V+ V+D+ GQ A F + + I+TK+DG ++GG L
Sbjct: 203 LFEEMRQISEATKPDLVIFVMDSSIGQTAFEQARAFKQTVAVGAVIITKMDGHAKGGGTL 262
Query: 61 SVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQ 120
S + P+ +G GE M++ E F R+LG GD+ FV K QEV+ ++ E+
Sbjct: 263 SAVAATKSPVIFIGTGEHMDEFEVFDAKPFVSRLLGNGDMSGFVNKLQEVVPKDQQPELL 322
Query: 121 KKIMSANFDFNDFLKQTRTVARMGSMSRVIGMIPGM-GKITP-AQVREAEKSLKIMEAMI 178
+ + F Q + + MG + V M+PGM ++ P +E++ +K M+
Sbjct: 323 EMLSHGKFTLRIMYDQFQNMLNMGPLKEVFSMLPGMRAEMMPEGHEKESQAKIKRYMTMM 382
Query: 179 EAMTPEEREK--PELLAESPVRRKRVAQDSGKTEQQVSQLVAQLFQMRVRMKNLMGV--M 234
++MT EE + P++ ES R R+A+ SG+ ++V +++ + ++ + G+ +
Sbjct: 383 DSMTNEELDSSNPKVFNES--RIMRIARGSGRIVREVMEMLEEYKRLTTMWGKVKGLKNL 440
Query: 235 EGGSLPALSNLEDALKSEQKAP 256
E G++ ALS +++ + + P
Sbjct: 441 EKGNMSALSKNKNSQQLSKVLP 462
>POMBASE|SPCC188.06c [details] [associations]
symbol:srp54 "signal recognition particle subunit Srp54"
species:4896 "Schizosaccharomyces pombe" [GO:0003924 "GTPase
activity" evidence=IMP] [GO:0005525 "GTP binding" evidence=IEA]
[GO:0005783 "endoplasmic reticulum" evidence=IDA] [GO:0005786
"signal recognition particle, endoplasmic reticulum targeting"
evidence=IDA] [GO:0005829 "cytosol" evidence=IDA] [GO:0006614
"SRP-dependent cotranslational protein targeting to membrane"
evidence=IMP] [GO:0008312 "7S RNA binding" evidence=IMP]
InterPro:IPR000897 InterPro:IPR003593 InterPro:IPR004125
InterPro:IPR006325 InterPro:IPR013822 InterPro:IPR022941
Pfam:PF00448 Pfam:PF02881 Pfam:PF02978 PROSITE:PS00300
SMART:SM00382 SMART:SM00962 SMART:SM00963 PomBase:SPCC188.06c
GO:GO:0005525 GO:GO:0005783 GO:GO:0005829 EMBL:CU329672
GenomeReviews:CU329672_GR GO:GO:0003924 GO:GO:0008312 GO:GO:0006614
SUPFAM:SSF47364 GO:GO:0005786 eggNOG:COG0541 HOGENOM:HOG000036165
KO:K03106 Gene3D:1.10.260.30 SUPFAM:SSF47446 TIGRFAMs:TIGR01425
OMA:GQQVVKI EMBL:X51613 EMBL:M55518 PIR:A33644 RefSeq:NP_588209.1
ProteinModelPortal:P21565 MINT:MINT-4687605 STRING:P21565
PRIDE:P21565 EnsemblFungi:SPCC188.06c.1 GeneID:2539290
KEGG:spo:SPCC188.06c OrthoDB:EOG4TMV9N NextBio:20800457
Uniprot:P21565
Length = 522
Score = 306 (112.8 bits), Expect = 8.9e-27, P = 8.9e-27
Identities = 77/256 (30%), Positives = 132/256 (51%)
Query: 4 ELKDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAALSVK 63
E+ ++ + P + ++++DA GQ A + F I+TKLDG ++GG ALS
Sbjct: 204 EMVEISDAIRPDQTIMILDASIGQAAESQSKAFKETADFGAVIITKLDGHAKGGGALSAV 263
Query: 64 EVSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQKKI 123
+ PI +G GE + DLE F P ++LG+GD+ +E Q + D + M K +
Sbjct: 264 AATKTPIVFIGTGEHINDLERFSPRSFISKLLGLGDLEGLMEHVQSL--DFDKKNMVKNL 321
Query: 124 MSANFDFNDFLKQTRTVARMGSMSRVIGMIPGMGKITPAQVREAEKSLKI--MEAMIEAM 181
F DF Q + ++G +S++ MIPGM + + + E SL++ M ++++M
Sbjct: 322 EQGKFTVRDFRDQLGNIMKLGPLSKMASMIPGMSNMMNG-MNDEEGSLRMKRMLYIVDSM 380
Query: 182 TPEEREKPELL-AESPVRRKRVAQDSGKTEQQVSQLVAQLFQMRVRMKNLMGVMEG--GS 238
T +E + LL E P R RVA+ SG + +V + ++Q+ ++ +M +G +G G
Sbjct: 381 TEQELDSDGLLFVEQPSRVLRVARGSGTSVLEVEETISQV-RVFAQMAKKIGGKDGILGK 439
Query: 239 LPALSNLEDALKSEQK 254
L N ALK + +
Sbjct: 440 LGG--NPAAALKKDPR 453
>DICTYBASE|DDB_G0275455 [details] [associations]
symbol:srp54 "signal recognition particle 54 kDa
subunit" species:44689 "Dictyostelium discoideum" [GO:0045335
"phagocytic vesicle" evidence=IDA] [GO:0048500 "signal recognition
particle" evidence=IEA] [GO:0017111 "nucleoside-triphosphatase
activity" evidence=IEA] [GO:0008312 "7S RNA binding" evidence=IEA]
[GO:0006614 "SRP-dependent cotranslational protein targeting to
membrane" evidence=IEA] [GO:0006184 "GTP catabolic process"
evidence=IEA] [GO:0005525 "GTP binding" evidence=IEA] [GO:0003924
"GTPase activity" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
[GO:0005786 "signal recognition particle, endoplasmic reticulum
targeting" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000897
InterPro:IPR003593 InterPro:IPR004125 InterPro:IPR006325
InterPro:IPR013822 InterPro:IPR022941 Pfam:PF00448 Pfam:PF02881
Pfam:PF02978 PROSITE:PS00300 SMART:SM00382 SMART:SM00962
SMART:SM00963 dictyBase:DDB_G0275455 GO:GO:0005525 GO:GO:0045335
GO:GO:0003924 GO:GO:0006184 GenomeReviews:CM000151_GR
EMBL:AAFI02000013 GO:GO:0008312 GO:GO:0006614 SUPFAM:SSF47364
GO:GO:0005786 eggNOG:COG0541 KO:K03106 Gene3D:1.10.260.30
SUPFAM:SSF47446 TIGRFAMs:TIGR01425 OMA:GQQVVKI RefSeq:XP_643640.1
HSSP:P61011 ProteinModelPortal:Q75K18 STRING:Q75K18
EnsemblProtists:DDB0232373 GeneID:8620227 KEGG:ddi:DDB_G0275455
Uniprot:Q75K18
Length = 542
Score = 306 (112.8 bits), Expect = 1.1e-26, P = 1.1e-26
Identities = 85/297 (28%), Positives = 143/297 (48%)
Query: 1 MMDELKDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAAL 60
+ +E+K ++ + P + V+D+ GQ A T F + + I+TK+DG+S GG A+
Sbjct: 201 LFEEMKQIETAVKPDNCIFVMDSSIGQAAYEQATAFRSSVKVGSIIITKMDGNSMGGGAI 260
Query: 61 SVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQ 120
S + PI +G GE + DLE F P ++LG GD+ +EK +EV+ ED+ +
Sbjct: 261 SAVAATNTPIIFIGTGEHLTDLELFDPSTFVSKLLGYGDMKGMLEKIKEVIP-EDSTSL- 318
Query: 121 KKIMSANFDFNDFLKQTRTVARMGSMSRVIGMIPGMGKITPAQVREAEKSLKIMEAMIEA 180
K+I F +Q + + ++G + +++ MIPGM ++ Q E LK ++++
Sbjct: 319 KEIAQGKFTLRSMQQQFQQIMQLGPIDKLVQMIPGMNQLPQLQGNEGGLKLKAYINILDS 378
Query: 181 MTPEEREKPELLAESPVRRKRV---AQDSGKTEQQVSQLVAQ--LFQMRVRMKN----LM 231
++ EK EL + P+ +KR+ AQ SG+ +V +L+ Q F+ + L
Sbjct: 379 LS----EK-ELDGKKPITQKRIITIAQGSGRHPNEVVELLEQHKTFEKLIGKGGPGGGLG 433
Query: 232 GVMEGGSLPALSNLEDALKSEQKAPPGTAXXXXXXXXXXQFVDPASTRPSPRGFGGG 288
+M G P N+E A+K + A G D A G GGG
Sbjct: 434 SLMAGKGGP--KNMEQAMK-QMNANGGMQGLMNSLKGMGGMGDLAKMFGGGGGGGGG 487
>CGD|CAL0003314 [details] [associations]
symbol:SRP54 species:5476 "Candida albicans" [GO:0005783
"endoplasmic reticulum" evidence=IEA] [GO:0005786 "signal
recognition particle, endoplasmic reticulum targeting"
evidence=IEA] [GO:0005829 "cytosol" evidence=IEA] [GO:0005048
"signal sequence binding" evidence=IEA] [GO:0003924 "GTPase
activity" evidence=IEA] [GO:0008312 "7S RNA binding" evidence=IEA]
[GO:0006614 "SRP-dependent cotranslational protein targeting to
membrane" evidence=IEA] [GO:0006184 "GTP catabolic process"
evidence=IEA] HAMAP:MF_00306 InterPro:IPR000897 InterPro:IPR003593
InterPro:IPR004125 InterPro:IPR006325 InterPro:IPR013822
InterPro:IPR022941 Pfam:PF00448 Pfam:PF02881 Pfam:PF02978
PROSITE:PS00300 SMART:SM00382 SMART:SM00962 SMART:SM00963
CGD:CAL0003314 GO:GO:0005525 GO:GO:0003924 GO:GO:0006184
EMBL:AACQ01000049 EMBL:AACQ01000048 GO:GO:0008312 GO:GO:0006614
SUPFAM:SSF47364 KO:K03106 Gene3D:1.10.260.30 SUPFAM:SSF47446
TIGRFAMs:TIGR01425 GO:GO:0048500 RefSeq:XP_717868.1
RefSeq:XP_717934.1 ProteinModelPortal:Q5A885 STRING:Q5A885
GeneID:3640377 GeneID:3640507 KEGG:cal:CaO19.10753
KEGG:cal:CaO19.3243 Uniprot:Q5A885
Length = 556
Score = 303 (111.7 bits), Expect = 2.5e-26, P = 2.5e-26
Identities = 74/242 (30%), Positives = 118/242 (48%)
Query: 1 MMDELKDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAAL 60
+ E+ + + PT+ ++V+D GQ A + F ILTK+DG ++GG A+
Sbjct: 218 LFTEMVQIGEAVQPTQTIMVMDGSIGQAAESQARAFKESSNFGSIILTKMDGHAKGGGAI 277
Query: 61 SVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQ 120
S + PI +G GE + DLE F P ++LG+GD+ +E Q + +D Q
Sbjct: 278 SAVAATKTPIVFIGTGEHVGDLEIFKPTTFISKLLGIGDIQGLIEHVQSLNLHQDEGHKQ 337
Query: 121 --KKIMSANFDFNDFLKQTRTVARMGSMSRVIGMIPGMGKITPAQVREAEKSLKI--MEA 176
+ I F DF Q +MG ++ + MIPG+ I +QV + E S KI M
Sbjct: 338 TIEHIKEGKFTLRDFQNQMNNFLKMGPLTNIASMIPGLSNIM-SQVGDEETSKKIKNMIY 396
Query: 177 MIEAMTPEEREKP-ELLAESPVRRKRVAQDSGKTEQQVSQLVAQLFQMRVRMKNLMGVME 235
++++MT +E E + + P R RVA+ SG +V ++ Q M K+ M +
Sbjct: 397 IMDSMTIKELESDGRIFIKEPSRIVRVARGSGCAVVEVEMILQQHRMMSTMAKSAMAA-Q 455
Query: 236 GG 237
GG
Sbjct: 456 GG 457
>TAIR|locus:2037803 [details] [associations]
symbol:ATHSRP54A "signal recognition particle 54 kDa
subunit" species:3702 "Arabidopsis thaliana" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003729 "mRNA binding"
evidence=ISS] [GO:0005525 "GTP binding" evidence=IEA;ISS]
[GO:0005737 "cytoplasm" evidence=ISM;ISS] [GO:0005786 "signal
recognition particle, endoplasmic reticulum targeting"
evidence=ISS] [GO:0006614 "SRP-dependent cotranslational protein
targeting to membrane" evidence=IEA] [GO:0006617 "SRP-dependent
cotranslational protein targeting to membrane, signal sequence
recognition" evidence=ISS] [GO:0008312 "7S RNA binding"
evidence=IEA;ISS] [GO:0017111 "nucleoside-triphosphatase activity"
evidence=IEA] [GO:0048500 "signal recognition particle"
evidence=IEA] [GO:0010267 "production of ta-siRNAs involved in RNA
interference" evidence=RCA] [GO:0035196 "production of miRNAs
involved in gene silencing by miRNA" evidence=RCA] [GO:0051607
"defense response to virus" evidence=RCA] InterPro:IPR000897
InterPro:IPR003593 InterPro:IPR004125 InterPro:IPR006325
InterPro:IPR013822 InterPro:IPR022941 Pfam:PF00448 Pfam:PF02881
Pfam:PF02978 PROSITE:PS00300 SMART:SM00382 SMART:SM00962
SMART:SM00963 GO:GO:0005525 EMBL:CP002684 GenomeReviews:CT485782_GR
GO:GO:0003924 GO:GO:0006184 EMBL:AC007591 GO:GO:0008312
GO:GO:0006614 SUPFAM:SSF47364 GO:GO:0005786 EMBL:L19997
EMBL:AF344329 EMBL:AY086187 IPI:IPI00526094 PIR:S42550
RefSeq:NP_563970.1 UniGene:At.24597 ProteinModelPortal:P37106
SMR:P37106 DIP:DIP-59002N STRING:P37106 PaxDb:P37106 PRIDE:P37106
EnsemblPlants:AT1G15310.1 GeneID:838100 KEGG:ath:AT1G15310
TAIR:At1g15310 eggNOG:COG0541 HOGENOM:HOG000036165
InParanoid:P37106 KO:K03106 OMA:KVIPPQM PhylomeDB:P37106
ProtClustDB:CLSN2686827 Genevestigator:P37106 GermOnline:AT1G15310
Gene3D:1.10.260.30 SUPFAM:SSF47446 TIGRFAMs:TIGR01425
Uniprot:P37106
Length = 479
Score = 270 (100.1 bits), Expect = 6.1e-23, P = 6.1e-23
Identities = 61/232 (26%), Positives = 117/232 (50%)
Query: 1 MMDELKDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAAL 60
+ +E++ V P V+ V+D+ GQ A F + + I+TK+DG ++GG AL
Sbjct: 201 LFEEMRQVAEATEPDLVIFVMDSSIGQAAFEQAEAFKETVSVGAVIITKMDGHAKGGGAL 260
Query: 61 SVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQ 120
S + P+ +G GE M++ E F R+LG GD V+K QEV+ ++ E+
Sbjct: 261 SAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGKGDWSGLVDKLQEVVPKDLQNELV 320
Query: 121 KKIMSANFDFNDFLKQTRTVARMGSMSRVIGMIPGMG-KITP-AQVREAEKSLKIMEAMI 178
+ + NF Q + R+ ++++ M+PG+ ++ P E+ +K M+
Sbjct: 321 ENLSQGNFTLRSMYDQFQCSLRI-PLNQLFSMLPGISAEMMPKGHGEESRVKMKRYMTMM 379
Query: 179 EAMTPEEREKPELLAESPVRRKRVAQDSGKTEQQVSQLVAQLFQMRVRMKNL 230
++MT +E + P + R R+A+ SG+ ++V +++ + ++ MK +
Sbjct: 380 DSMTNKELDSPNPKIFNESRIMRIARGSGRLVREVMEMLEEYKRIAKTMKGI 431
>TIGR_CMR|CHY_1442 [details] [associations]
symbol:CHY_1442 "signal recognition particle-docking
protein FtsY" species:246194 "Carboxydothermus hydrogenoformans
Z-2901" [GO:0003924 "GTPase activity" evidence=ISS] [GO:0005047
"signal recognition particle binding" evidence=ISS] [GO:0009306
"protein secretion" evidence=ISS] HAMAP:MF_00920 InterPro:IPR000897
InterPro:IPR003593 InterPro:IPR004390 InterPro:IPR013822
Pfam:PF00448 Pfam:PF02881 PROSITE:PS00300 SMART:SM00382
SMART:SM00962 SMART:SM00963 GO:GO:0005525 GO:GO:0005737
EMBL:CP000141 GenomeReviews:CP000141_GR GO:GO:0003924 GO:GO:0031226
eggNOG:COG0552 KO:K03110 GO:GO:0006614 SUPFAM:SSF47364
TIGRFAMs:TIGR00064 RefSeq:YP_360274.1 ProteinModelPortal:Q3AC60
SMR:Q3AC60 STRING:Q3AC60 GeneID:3728659 KEGG:chy:CHY_1442
PATRIC:21276015 HOGENOM:HOG000036277 OMA:NRIPDEL
BioCyc:CHYD246194:GJCN-1441-MONOMER Uniprot:Q3AC60
Length = 303
Score = 213 (80.0 bits), Expect = 2.0e-17, P = 2.0e-17
Identities = 45/93 (48%), Positives = 61/93 (65%)
Query: 1 MMDELKDVKRVLN------PTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDS 54
+M+EL+ VKRV+ P EVLLV+DA TGQ A + V FN + +TG +LTKLDG +
Sbjct: 201 LMEELRKVKRVIERELPGAPDEVLLVLDATTGQNALSQVEYFNKALDLTGLVLTKLDGTA 260
Query: 55 RGGAALSVKEVSGKPIKLVGRGERMEDLEPFYP 87
+GG + +K PIK +G GE+M+DL PF P
Sbjct: 261 KGGVIIGIKSSYQIPIKFIGVGEKMDDLRPFDP 293
>UNIPROTKB|P10121 [details] [associations]
symbol:ftsY "SRP receptor" species:83333 "Escherichia coli
K-12" [GO:0006184 "GTP catabolic process" evidence=IEA;IDA]
[GO:0005829 "cytosol" evidence=IDA] [GO:0031226 "intrinsic to
plasma membrane" evidence=IDA] [GO:0003924 "GTPase activity"
evidence=IDA] [GO:0006614 "SRP-dependent cotranslational protein
targeting to membrane" evidence=IEA;IDA] [GO:0005525 "GTP binding"
evidence=IEA;IDA] HAMAP:MF_00920 InterPro:IPR000897
InterPro:IPR003593 InterPro:IPR004390 InterPro:IPR013822
Pfam:PF00448 Pfam:PF02881 PROSITE:PS00300 SMART:SM00382
SMART:SM00962 SMART:SM00963 GO:GO:0005525 GO:GO:0005829 EMBL:U00039
EMBL:U00096 EMBL:AP009048 GenomeReviews:AP009048_GR
GenomeReviews:U00096_GR GO:GO:0003924 GO:GO:0031226 EMBL:X04398
PIR:S03130 RefSeq:NP_417921.1 RefSeq:YP_491970.1 PDB:1FTS PDB:2QY9
PDB:2XXA PDB:2YHS PDBsum:1FTS PDBsum:2QY9 PDBsum:2XXA PDBsum:2YHS
ProteinModelPortal:P10121 SMR:P10121 DIP:DIP-9709N IntAct:P10121
MINT:MINT-1247716 TCDB:3.A.5.1.1 PRIDE:P10121
EnsemblBacteria:EBESCT00000004496 EnsemblBacteria:EBESCT00000016891
GeneID:12933505 GeneID:947978 KEGG:ecj:Y75_p3714 KEGG:eco:b3464
PATRIC:32122372 EchoBASE:EB0342 EcoGene:EG10346 eggNOG:COG0552
HOGENOM:HOG000036278 KO:K03110 OMA:AETNAEY ProtClustDB:PRK10416
BioCyc:EcoCyc:EG10346-MONOMER BioCyc:ECOL316407:JW3429-MONOMER
EvolutionaryTrace:P10121 Genevestigator:P10121 GO:GO:0006614
SUPFAM:SSF47364 TIGRFAMs:TIGR00064 Uniprot:P10121
Length = 497
Score = 204 (76.9 bits), Expect = 2.3e-15, P = 2.3e-15
Identities = 43/94 (45%), Positives = 59/94 (62%)
Query: 1 MMDELKDVKRVLN------PTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDS 54
+M+ELK + RV+ P EV+L +DA TGQ A + F+ +G+TG LTKLDG +
Sbjct: 393 LMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQNAVSQAKLFHEAVGLTGITLTKLDGTA 452
Query: 55 RGGAALSVKEVSGKPIKLVGRGERMEDLEPFYPD 88
+GG SV + G PI+ +G GER+EDL PF D
Sbjct: 453 KGGVIFSVADQFGIPIRYIGVGERIEDLRPFKAD 486
>TIGR_CMR|BA_3985 [details] [associations]
symbol:BA_3985 "signal recognition particle-docking protein
FtsY" species:198094 "Bacillus anthracis str. Ames" [GO:0003924
"GTPase activity" evidence=ISS] [GO:0005047 "signal recognition
particle binding" evidence=ISS] [GO:0009306 "protein secretion"
evidence=ISS] HAMAP:MF_00920 InterPro:IPR000897 InterPro:IPR003593
InterPro:IPR004390 InterPro:IPR013822 Pfam:PF00448 Pfam:PF02881
PROSITE:PS00300 SMART:SM00382 SMART:SM00962 SMART:SM00963
GO:GO:0005525 GO:GO:0005737 EMBL:AE016879 EMBL:AE017334
EMBL:AE017225 GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
GenomeReviews:AE017334_GR GO:GO:0003924 GO:GO:0031226 KO:K03110
ProtClustDB:PRK10416 GO:GO:0006614 SUPFAM:SSF47364
TIGRFAMs:TIGR00064 HSSP:P83749 HOGENOM:HOG000036277
RefSeq:NP_846227.1 RefSeq:YP_020624.1 RefSeq:YP_029949.1
ProteinModelPortal:Q81WJ0 SMR:Q81WJ0 DNASU:1086789
EnsemblBacteria:EBBACT00000008913 EnsemblBacteria:EBBACT00000016260
EnsemblBacteria:EBBACT00000019469 GeneID:1086789 GeneID:2817443
GeneID:2848220 KEGG:ban:BA_3985 KEGG:bar:GBAA_3985 KEGG:bat:BAS3698
OMA:LVYRYRK BioCyc:BANT260799:GJAJ-3756-MONOMER
BioCyc:BANT261594:GJ7F-3873-MONOMER Uniprot:Q81WJ0
Length = 329
Score = 202 (76.2 bits), Expect = 2.4e-15, P = 2.4e-15
Identities = 42/95 (44%), Positives = 60/95 (63%)
Query: 1 MMDELKDVKRVLN------PTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDS 54
+M EL+ VKRV+ P EVLLV+DA TGQ + TF +TG +LTKLDG +
Sbjct: 220 LMKELEKVKRVIEREVPGAPHEVLLVIDATTGQNGLSQAKTFREATNVTGIVLTKLDGTA 279
Query: 55 RGGAALSVKEVSGKPIKLVGRGERMEDLEPFYPDR 89
+GG L+++ P+K VG GE+M+DL+ F P++
Sbjct: 280 KGGIVLAIRNEMDVPVKFVGLGEQMDDLQQFDPEQ 314
>UNIPROTKB|P66842 [details] [associations]
symbol:ftsY "Signal recognition particle receptor FtsY"
species:1773 "Mycobacterium tuberculosis" [GO:0005618 "cell wall"
evidence=IDA] [GO:0005886 "plasma membrane" evidence=IDA]
HAMAP:MF_00920 InterPro:IPR000897 InterPro:IPR003593
InterPro:IPR004390 InterPro:IPR013822 Pfam:PF00448 Pfam:PF02881
PROSITE:PS00300 SMART:SM00382 SMART:SM00962 SMART:SM00963
GO:GO:0005525 GO:GO:0005886 GO:GO:0005737 GO:GO:0005618
EMBL:AE000516 GenomeReviews:AE000516_GR GenomeReviews:AL123456_GR
GO:GO:0006184 EMBL:BX842581 GO:GO:0017111 eggNOG:COG0552
HOGENOM:HOG000036278 KO:K03110 ProtClustDB:PRK10416 GO:GO:0006614
SUPFAM:SSF47364 TIGRFAMs:TIGR00064 PIR:A70748 RefSeq:NP_217437.1
RefSeq:NP_337502.1 RefSeq:YP_006516374.1 ProteinModelPortal:P66842
SMR:P66842 TCDB:3.A.5.2.2 PhosSite:P12071727 PRIDE:P66842
EnsemblBacteria:EBMYCT00000000121 EnsemblBacteria:EBMYCT00000072194
GeneID:13317714 GeneID:887205 GeneID:925285 KEGG:mtc:MT2989
KEGG:mtu:Rv2921c KEGG:mtv:RVBD_2921c PATRIC:18128342
TubercuList:Rv2921c OMA:FIGIGEN Uniprot:P66842
Length = 422
Score = 201 (75.8 bits), Expect = 9.9e-15, P = 9.9e-15
Identities = 46/100 (46%), Positives = 60/100 (60%)
Query: 1 MMDELKDVKRVL----NPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRG 56
+MDEL VKRV+ + EVLLV+DA GQ A F + I+GA+LTKLDG ++G
Sbjct: 323 LMDELDKVKRVVTRRASVDEVLLVLDATIGQNGLAQARVFAEVVDISGAVLTKLDGTAKG 382
Query: 57 GAALSVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILG 96
G V++ G P+KLVG GE +DL PF P +LG
Sbjct: 383 GIVFRVQQELGVPVKLVGLGEGPDDLAPFEPAAFVDALLG 422
>UNIPROTKB|P83749 [details] [associations]
symbol:ftsY "Signal recognition particle receptor FtsY"
species:271 "Thermus aquaticus" [GO:0005515 "protein binding"
evidence=IPI] HAMAP:MF_00920 InterPro:IPR000897 InterPro:IPR003593
InterPro:IPR004390 InterPro:IPR013822 Pfam:PF00448 Pfam:PF02881
PROSITE:PS00300 SMART:SM00382 SMART:SM00962 SMART:SM00963
GO:GO:0005525 GO:GO:0005886 GO:GO:0005737 GO:GO:0006184
GO:GO:0017111 GO:GO:0006614 SUPFAM:SSF47364 TIGRFAMs:TIGR00064
EMBL:AY484668 PDB:1OKK PDB:1RJ9 PDB:2CNW PDB:2IYL PDB:2J7P PDB:2Q9A
PDB:2Q9B PDB:2Q9C PDB:2XKV PDBsum:1OKK PDBsum:1RJ9 PDBsum:2CNW
PDBsum:2IYL PDBsum:2J7P PDBsum:2Q9A PDBsum:2Q9B PDBsum:2Q9C
PDBsum:2XKV ProteinModelPortal:P83749 SMR:P83749 IntAct:P83749
EvolutionaryTrace:P83749 Uniprot:P83749
Length = 304
Score = 192 (72.6 bits), Expect = 7.7e-14, P = 7.7e-14
Identities = 42/101 (41%), Positives = 59/101 (58%)
Query: 1 MMDELKDVKRVL------NPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDS 54
+M+ELK VKR + P EV LV+DA+TGQ F+ +G+TG I+TKLDG +
Sbjct: 202 LMEELKKVKRAIAKADPEEPKEVWLVLDAVTGQNGLEQAKKFHEAVGLTGVIVTKLDGTA 261
Query: 55 RGGAALSVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRIL 95
+GG + + PIK VG GE +DL+PF P+ +L
Sbjct: 262 KGGVLIPIVRTLKVPIKFVGVGEGPDDLQPFDPEAFVEALL 302
>TIGR_CMR|CBU_1903 [details] [associations]
symbol:CBU_1903 "signal recognition particle-docking
protein FtsY" species:227377 "Coxiella burnetii RSA 493"
[GO:0003924 "GTPase activity" evidence=ISS] [GO:0005047 "signal
recognition particle binding" evidence=ISS] [GO:0009306 "protein
secretion" evidence=ISS] HAMAP:MF_00920 InterPro:IPR000897
InterPro:IPR003593 InterPro:IPR004390 InterPro:IPR013822
Pfam:PF00448 Pfam:PF02881 PROSITE:PS00300 SMART:SM00382
SMART:SM00962 SMART:SM00963 GO:GO:0005525 GO:GO:0005737
GO:GO:0051301 GO:GO:0003924 EMBL:AE016828 GenomeReviews:AE016828_GR
GO:GO:0031226 HOGENOM:HOG000036278 KO:K03110 ProtClustDB:PRK10416
GO:GO:0006614 SUPFAM:SSF47364 TIGRFAMs:TIGR00064 OMA:NRIPDEL
RefSeq:NP_820880.1 HSSP:P10121 ProteinModelPortal:Q83AI3 SMR:Q83AI3
PRIDE:Q83AI3 GeneID:1209816 KEGG:cbu:CBU_1903 PATRIC:17932545
BioCyc:CBUR227377:GJ7S-1878-MONOMER Uniprot:Q83AI3
Length = 324
Score = 190 (71.9 bits), Expect = 2.3e-13, P = 2.3e-13
Identities = 40/91 (43%), Positives = 57/91 (62%)
Query: 1 MMDELKDVKRVLN------PTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDS 54
+MDEL +KRV+ P E LLV+DA TGQ A F+ IG+TG +TKLDG +
Sbjct: 222 LMDELAKIKRVMKKINPDAPHETLLVLDAGTGQNAINQAEQFHEHIGLTGIAITKLDGTA 281
Query: 55 RGGAALSVKEVSGKPIKLVGRGERMEDLEPF 85
+GG ++ + PI+ +G GE++EDL+PF
Sbjct: 282 KGGVIFAIAKKMQLPIRFIGMGEKIEDLKPF 312
>TIGR_CMR|SPO_1339 [details] [associations]
symbol:SPO_1339 "signal recognition particle-docking
protein FtsY" species:246200 "Ruegeria pomeroyi DSS-3" [GO:0003924
"GTPase activity" evidence=ISS] [GO:0009306 "protein secretion"
evidence=ISS] [GO:0048501 "signal recognition particle, plasma
membrane targeting" evidence=ISS] HAMAP:MF_00920 InterPro:IPR000897
InterPro:IPR003593 InterPro:IPR004390 InterPro:IPR013822
Pfam:PF00448 Pfam:PF02881 SMART:SM00382 SMART:SM00962 SMART:SM00963
GO:GO:0005525 GO:GO:0005737 EMBL:CP000031 GenomeReviews:CP000031_GR
GO:GO:0003924 GO:GO:0031226 HOGENOM:HOG000036278 KO:K03110
GO:GO:0006614 SUPFAM:SSF47364 TIGRFAMs:TIGR00064 OMA:ADMGVET
RefSeq:YP_166581.1 ProteinModelPortal:Q5LTS4 SMR:Q5LTS4
GeneID:3192959 KEGG:sil:SPO1339 PATRIC:23375989 Uniprot:Q5LTS4
Length = 390
Score = 184 (69.8 bits), Expect = 2.9e-12, P = 2.9e-12
Identities = 40/102 (39%), Positives = 61/102 (59%)
Query: 1 MMDELKDVKRVLN------PTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDS 54
+M+EL + RV+ P LLV+DA TGQ A + V TF ++G ++TKLDG +
Sbjct: 285 LMEELAKIVRVIRKKDDTAPHNTLLVLDATTGQNAISQVETFQKLADVSGLVMTKLDGTA 344
Query: 55 RGGAALSVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILG 96
+GG +S+ + G PI +G GE+++DL PF P+ A + G
Sbjct: 345 KGGILVSLADRFGLPIHAIGVGEQIDDLAPFDPEDFAAALTG 386
>TIGR_CMR|NSE_0545 [details] [associations]
symbol:NSE_0545 "signal recognition particle-docking
protein FtsY" species:222891 "Neorickettsia sennetsu str. Miyayama"
[GO:0003924 "GTPase activity" evidence=ISS] [GO:0009306 "protein
secretion" evidence=ISS] InterPro:IPR000897 InterPro:IPR003593
InterPro:IPR004390 InterPro:IPR013822 Pfam:PF00448 Pfam:PF02881
SMART:SM00382 SMART:SM00962 SMART:SM00963 GO:GO:0005525
GO:GO:0006184 GO:GO:0017111 EMBL:CP000237 GenomeReviews:CP000237_GR
eggNOG:COG0552 HOGENOM:HOG000036278 KO:K03110 ProtClustDB:PRK10416
GO:GO:0006614 SUPFAM:SSF47364 TIGRFAMs:TIGR00064 RefSeq:YP_506428.1
ProteinModelPortal:Q2GDL8 STRING:Q2GDL8 GeneID:3931766
KEGG:nse:NSE_0545 PATRIC:22681139 OMA:RIISQNQ
BioCyc:NSEN222891:GHFU-564-MONOMER Uniprot:Q2GDL8
Length = 309
Score = 177 (67.4 bits), Expect = 1.0e-11, P = 1.0e-11
Identities = 41/102 (40%), Positives = 58/102 (56%)
Query: 1 MMDELKDVKRVLN------PTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDS 54
+M+ELK + RVL+ P EV+L +DA TGQ A V F + +TG ++TKLDG S
Sbjct: 202 LMEELKKICRVLSKLMPSAPNEVILALDASTGQNALNQVQVFKDAVNLTGLVVTKLDGTS 261
Query: 55 RGGAALSVKE-VSGKPIKLVGRGERMEDLEPFYPDRMAGRIL 95
+GG +++ E I VG GE++ DLE F P +L
Sbjct: 262 KGGVIVAIAERYPNLGIYFVGTGEKITDLEEFSPSEFVDALL 303
>TIGR_CMR|CPS_0157 [details] [associations]
symbol:CPS_0157 "signal recognition particle-docking
protein FtsY" species:167879 "Colwellia psychrerythraea 34H"
[GO:0000910 "cytokinesis" evidence=ISS] [GO:0003924 "GTPase
activity" evidence=ISS] HAMAP:MF_00920 InterPro:IPR000897
InterPro:IPR003593 InterPro:IPR004390 InterPro:IPR013822
Pfam:PF00448 Pfam:PF02881 PROSITE:PS00300 SMART:SM00382
SMART:SM00962 SMART:SM00963 GO:GO:0005525 GO:GO:0005737
GO:GO:0003924 EMBL:CP000083 GenomeReviews:CP000083_GR GO:GO:0031226
eggNOG:COG0552 HOGENOM:HOG000036278 KO:K03110 GO:GO:0006614
SUPFAM:SSF47364 TIGRFAMs:TIGR00064 RefSeq:YP_266925.1
ProteinModelPortal:Q48AI8 SMR:Q48AI8 STRING:Q48AI8 GeneID:3519649
KEGG:cps:CPS_0157 PATRIC:21463731 OMA:VEAVAIQ
BioCyc:CPSY167879:GI48-260-MONOMER Uniprot:Q48AI8
Length = 481
Score = 178 (67.7 bits), Expect = 2.7e-11, P = 2.7e-11
Identities = 39/94 (41%), Positives = 57/94 (60%)
Query: 1 MMDELKDVKRVLN------PTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDS 54
+M+ELK V RV+ P EV+L +DA TGQ A + F+ +G+TG +TKLDG +
Sbjct: 379 LMEELKKVVRVMKKLDVNAPHEVMLTLDAGTGQNALSQTKLFDEAVGLTGLTITKLDGTA 438
Query: 55 RGGAALSVKEVSGKPIKLVGRGERMEDLEPFYPD 88
+GG +V + PI+ +G GE ++DL PF D
Sbjct: 439 KGGVIFAVADKHSIPIRYLGVGEGIDDLRPFNSD 472
>UNIPROTKB|Q97QH0 [details] [associations]
symbol:ftsY "Signal recognition particle receptor FtsY"
species:170187 "Streptococcus pneumoniae TIGR4" [GO:0005515
"protein binding" evidence=IPI] HAMAP:MF_00920 InterPro:IPR000897
InterPro:IPR003593 InterPro:IPR004390 InterPro:IPR013822
Pfam:PF00448 Pfam:PF02881 PROSITE:PS00300 SMART:SM00382
SMART:SM00962 SMART:SM00963 GO:GO:0005525 GO:GO:0005737
GO:GO:0003924 EMBL:AE005672 GenomeReviews:AE005672_GR GO:GO:0031226
HOGENOM:HOG000036278 KO:K03110 ProtClustDB:PRK10416 GO:GO:0006614
SUPFAM:SSF47364 TIGRFAMs:TIGR00064 HSSP:P83749 PIR:D95144
RefSeq:NP_345709.1 ProteinModelPortal:Q97QH0
EnsemblBacteria:EBSTRT00000026851 GeneID:931757 KEGG:spn:SP_1244
PATRIC:19706881 OMA:DEGKSVI Uniprot:Q97QH0
Length = 429
Score = 168 (64.2 bits), Expect = 3.6e-10, P = 3.6e-10
Identities = 37/104 (35%), Positives = 60/104 (57%)
Query: 1 MMDELKDVKRVLN------PTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDS 54
+M EL+ + R++ P E L +DA TGQ A F+ +TG +LTK+DG +
Sbjct: 325 LMAELEKIGRIIKRVVPEAPHETFLALDASTGQNALVQAKEFSKITPLTGIVLTKIDGTA 384
Query: 55 RGGAALSVKEVSGKPIKLVGRGERMEDLEPFYPDR-MAGRILGM 97
RGG L+++E P+KL+G GE+++D+ F + M G + G+
Sbjct: 385 RGGVVLAIREELNIPVKLIGFGEKIDDIGEFNSENFMKGLLEGL 428
>TIGR_CMR|GSU_1132 [details] [associations]
symbol:GSU_1132 "signal recognition particle-docking
protein FtsY" species:243231 "Geobacter sulfurreducens PCA"
[GO:0003924 "GTPase activity" evidence=ISS] [GO:0005047 "signal
recognition particle binding" evidence=ISS] [GO:0009306 "protein
secretion" evidence=ISS] HAMAP:MF_00920 InterPro:IPR000897
InterPro:IPR003593 InterPro:IPR004390 InterPro:IPR013822
Pfam:PF00448 Pfam:PF02881 PROSITE:PS00300 SMART:SM00382
SMART:SM00962 SMART:SM00963 GO:GO:0005525 GO:GO:0005737
GO:GO:0003924 EMBL:AE017180 GenomeReviews:AE017180_GR GO:GO:0031226
HOGENOM:HOG000036278 KO:K03110 ProtClustDB:PRK10416 GO:GO:0006614
SUPFAM:SSF47364 TIGRFAMs:TIGR00064 RefSeq:NP_952185.1
ProteinModelPortal:Q74E32 SMR:Q74E32 GeneID:2686843
KEGG:gsu:GSU1132 PATRIC:22025026 OMA:HLMAELE
BioCyc:GSUL243231:GH27-1142-MONOMER Uniprot:Q74E32
Length = 350
Score = 164 (62.8 bits), Expect = 6.6e-10, P = 6.6e-10
Identities = 36/95 (37%), Positives = 56/95 (58%)
Query: 1 MMDELKDVKRVLN------PTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDS 54
+M+ELK V+R+++ P E LLV+DA TGQ A + F +TG LTKLDG +
Sbjct: 249 LMEELKKVRRIMSREIPGAPHETLLVLDAATGQNALSQAKLFKEAAQVTGIALTKLDGTA 308
Query: 55 RGGAALSVKEVSGKPIKLVGRGERMEDLEPFYPDR 89
+GG +++ P++ +G GE ++DL F P +
Sbjct: 309 KGGIVVAICNEFRIPVRYIGVGEGIDDLRDFDPSQ 343
>TIGR_CMR|SO_4586 [details] [associations]
symbol:SO_4586 "signal recognition particle-docking protein
FtsY" species:211586 "Shewanella oneidensis MR-1" [GO:0003924
"GTPase activity" evidence=ISS] [GO:0005047 "signal recognition
particle binding" evidence=ISS] [GO:0009306 "protein secretion"
evidence=ISS] HAMAP:MF_00920 InterPro:IPR000897 InterPro:IPR003593
InterPro:IPR004390 InterPro:IPR013822 Pfam:PF00448 Pfam:PF02881
PROSITE:PS00300 SMART:SM00382 SMART:SM00962 SMART:SM00963
GO:GO:0005525 GO:GO:0005737 GO:GO:0003924 EMBL:AE014299
GenomeReviews:AE014299_GR GO:GO:0031226 HOGENOM:HOG000036278
KO:K03110 GO:GO:0006614 SUPFAM:SSF47364 TIGRFAMs:TIGR00064
HSSP:P10121 RefSeq:NP_720102.1 ProteinModelPortal:Q8E8S5 SMR:Q8E8S5
GeneID:1172171 KEGG:son:SO_4586 PATRIC:23528839 OMA:PDNANGP
Uniprot:Q8E8S5
Length = 510
Score = 165 (63.1 bits), Expect = 1.1e-09, P = 1.1e-09
Identities = 34/91 (37%), Positives = 55/91 (60%)
Query: 1 MMDELKDVKRVLN------PTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDS 54
+M+ELK V RV+ P EV+L +DA TGQ A + F +G+TG ++KLDG +
Sbjct: 403 LMEELKKVVRVMKKLDPEAPHEVMLTLDASTGQNAISQAQLFQEAVGVTGMTISKLDGTA 462
Query: 55 RGGAALSVKEVSGKPIKLVGRGERMEDLEPF 85
+GG ++ + P++ +G GE+++DL F
Sbjct: 463 KGGVVFAIADKFKIPLRYIGVGEQIDDLRTF 493
>TIGR_CMR|VC_0147 [details] [associations]
symbol:VC_0147 "signal recognition particle-docking protein
FtsY" species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0003924
"GTPase activity" evidence=ISS] [GO:0005047 "signal recognition
particle binding" evidence=ISS] [GO:0009306 "protein secretion"
evidence=ISS] HAMAP:MF_00920 InterPro:IPR000897 InterPro:IPR003593
InterPro:IPR004390 InterPro:IPR013822 Pfam:PF00448 Pfam:PF02881
PROSITE:PS00300 SMART:SM00382 SMART:SM00962 SMART:SM00963
GO:GO:0005525 GO:GO:0005737 GO:GO:0051301 EMBL:AE003852
GenomeReviews:AE003852_GR GO:GO:0003924 GO:GO:0031226 KO:K03110
ProtClustDB:PRK10416 GO:GO:0006614 SUPFAM:SSF47364
TIGRFAMs:TIGR00064 OMA:VEAVAIQ HSSP:P10121 PIR:B82360
RefSeq:NP_229805.1 ProteinModelPortal:Q9KVJ6 SMR:Q9KVJ6
DNASU:2614855 GeneID:2614855 KEGG:vch:VC0147 PATRIC:20079332
Uniprot:Q9KVJ6
Length = 391
Score = 163 (62.4 bits), Expect = 1.2e-09, P = 1.2e-09
Identities = 35/91 (38%), Positives = 55/91 (60%)
Query: 1 MMDELKDVKRVLN------PTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDS 54
+M+EL+ + RV+ P E++L +DA TGQ A + F+ ITG LTKLDG +
Sbjct: 287 LMEELRKIVRVMKKIDDSAPHEIMLTLDAGTGQNAISQAKLFSDVAPITGITLTKLDGTA 346
Query: 55 RGGAALSVKEVSGKPIKLVGRGERMEDLEPF 85
+GG ++ + PI+ +G GE+++DL PF
Sbjct: 347 KGGVIFAIADQFQIPIRYIGVGEKIDDLRPF 377
>TIGR_CMR|ECH_1111 [details] [associations]
symbol:ECH_1111 "signal recognition particle-docking
protein FtsY" species:205920 "Ehrlichia chaffeensis str. Arkansas"
[GO:0003924 "GTPase activity" evidence=ISS] [GO:0005047 "signal
recognition particle binding" evidence=ISS] [GO:0009306 "protein
secretion" evidence=ISS] InterPro:IPR000897 InterPro:IPR003593
InterPro:IPR004390 InterPro:IPR013822 Pfam:PF00448 Pfam:PF02881
SMART:SM00382 SMART:SM00962 SMART:SM00963 GO:GO:0005525
EMBL:CP000236 GenomeReviews:CP000236_GR GO:GO:0006184 GO:GO:0017111
eggNOG:COG0552 HOGENOM:HOG000036278 KO:K03110 ProtClustDB:PRK10416
GO:GO:0006614 SUPFAM:SSF47364 TIGRFAMs:TIGR00064 RefSeq:YP_507895.1
ProteinModelPortal:Q2GF88 STRING:Q2GF88 GeneID:3927733
KEGG:ech:ECH_1111 PATRIC:20577558 OMA:ADMGVET
BioCyc:ECHA205920:GJNR-1114-MONOMER Uniprot:Q2GF88
Length = 310
Score = 159 (61.0 bits), Expect = 1.9e-09, P = 1.9e-09
Identities = 35/106 (33%), Positives = 59/106 (55%)
Query: 1 MMDELKDVKRVLN------PTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDS 54
+M+EL ++R++N P +V+L++DA TGQ A V F + I+G I+TKLDG +
Sbjct: 205 LMEELAKIRRIINKHDNNAPHDVILILDATTGQNAVNQVDAFLQFVNISGLIITKLDGTA 264
Query: 55 RGGAALSVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDV 100
+GG + + + I +G GE +E L+ F A +L + +
Sbjct: 265 KGGVVIRIAQKYKLNIHAIGIGESVEQLQDFSAKEFAAGLLDINTI 310
>TIGR_CMR|APH_1227 [details] [associations]
symbol:APH_1227 "signal recognition particle-docking
protein FtsY" species:212042 "Anaplasma phagocytophilum HZ"
[GO:0003924 "GTPase activity" evidence=ISS] [GO:0005047 "signal
recognition particle binding" evidence=ISS] [GO:0009306 "protein
secretion" evidence=ISS] InterPro:IPR000897 InterPro:IPR003593
InterPro:IPR004390 InterPro:IPR013822 Pfam:PF00448 Pfam:PF02881
SMART:SM00382 SMART:SM00962 SMART:SM00963 GO:GO:0005525
GO:GO:0006184 EMBL:CP000235 GenomeReviews:CP000235_GR GO:GO:0017111
eggNOG:COG0552 HOGENOM:HOG000036278 KO:K03110 ProtClustDB:PRK10416
GO:GO:0006614 SUPFAM:SSF47364 TIGRFAMs:TIGR00064 OMA:ADMGVET
RefSeq:YP_505757.1 ProteinModelPortal:Q2GIP4 STRING:Q2GIP4
GeneID:3931129 KEGG:aph:APH_1227 PATRIC:20951240
BioCyc:APHA212042:GHPM-1232-MONOMER Uniprot:Q2GIP4
Length = 305
Score = 153 (58.9 bits), Expect = 9.3e-09, P = 9.3e-09
Identities = 37/101 (36%), Positives = 54/101 (53%)
Query: 1 MMDELKDVKRVLN------PTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDS 54
+M+EL + RV+ P +++LV+DA GQ V F+ + + G ILTKLDG +
Sbjct: 203 LMEELAKICRVIRRHDEKAPHDIILVLDATIGQNTFTQVEMFSSFVDVGGLILTKLDGTA 262
Query: 55 RGGAALSVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRIL 95
+GG L V + I +G GE +EDLE F A +L
Sbjct: 263 KGGVVLRVSQKYNLMIHAIGTGEGIEDLEDFSATNFAKSLL 303
>TIGR_CMR|CJE_1340 [details] [associations]
symbol:CJE_1340 "signal recognition particle-docking
protein FtsY" species:195099 "Campylobacter jejuni RM1221"
[GO:0003924 "GTPase activity" evidence=ISS] [GO:0005047 "signal
recognition particle binding" evidence=ISS] [GO:0009306 "protein
secretion" evidence=ISS] HAMAP:MF_00920 InterPro:IPR000897
InterPro:IPR003593 InterPro:IPR004390 InterPro:IPR013822
Pfam:PF00448 Pfam:PF02881 PROSITE:PS00300 SMART:SM00382
SMART:SM00962 GO:GO:0005525 GO:GO:0005737 GO:GO:0003924
EMBL:CP000025 GenomeReviews:CP000025_GR GO:GO:0031226
eggNOG:COG0552 KO:K03110 ProtClustDB:PRK10416 GO:GO:0006614
SUPFAM:SSF47364 TIGRFAMs:TIGR00064 HOGENOM:HOG000036277
RefSeq:YP_179327.1 ProteinModelPortal:Q5HTQ8 STRING:Q5HTQ8
GeneID:3231847 KEGG:cjr:CJE1340 PATRIC:20044480 OMA:DLVTPKQ
BioCyc:CJEJ195099:GJC0-1366-MONOMER Uniprot:Q5HTQ8
Length = 288
Score = 129 (50.5 bits), Expect = 5.6e-06, P = 5.6e-06
Identities = 32/88 (36%), Positives = 45/88 (51%)
Query: 4 ELKDVKRVLN------PTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGG 57
EL+ + R+ N P +LV+D G FN + + G I+TKLDG ++GG
Sbjct: 186 ELEKIVRISNKALEGAPHRKILVLDGTQGNAGILQAKAFNELVKLDGVIITKLDGTAKGG 245
Query: 58 AALSVKEVSGKPIKLVGRGERMEDLEPF 85
A S+ PI VG GE+M DL+ F
Sbjct: 246 ALFSIARELELPIFYVGVGEQMTDLQEF 273
>FB|FBgn0010391 [details] [associations]
symbol:Gtp-bp "GTP-binding protein" species:7227 "Drosophila
melanogaster" [GO:0003729 "mRNA binding" evidence=NAS] [GO:0005789
"endoplasmic reticulum membrane" evidence=IDA] [GO:0007409
"axonogenesis" evidence=IEP] [GO:0050708 "regulation of protein
secretion" evidence=IEP] [GO:0005785 "signal recognition particle
receptor complex" evidence=ISS] [GO:0005047 "signal recognition
particle binding" evidence=ISS] [GO:0005525 "GTP binding"
evidence=IEA;NAS] [GO:0006184 "GTP catabolic process" evidence=IEA]
[GO:0006614 "SRP-dependent cotranslational protein targeting to
membrane" evidence=IEA] [GO:0003924 "GTPase activity" evidence=IEA]
[GO:0005811 "lipid particle" evidence=IDA] InterPro:IPR000897
InterPro:IPR003593 InterPro:IPR007222 InterPro:IPR011012
InterPro:IPR013822 Pfam:PF00448 Pfam:PF02881 Pfam:PF04086
PROSITE:PS00300 SMART:SM00382 SMART:SM00962 SMART:SM00963
GO:GO:0005525 GO:GO:0005789 GO:GO:0005811 EMBL:AE014298
GO:GO:0003924 GO:GO:0003723 GO:GO:0007409 GO:GO:0050708
SUPFAM:SSF64356 eggNOG:COG0552 GO:GO:0006614 SUPFAM:SSF47364
KO:K13431 GO:GO:0005785 GO:GO:0005047 OMA:LILWSSC EMBL:AY061329
EMBL:S65640 RefSeq:NP_524887.2 UniGene:Dm.129
ProteinModelPortal:Q9U5L1 SMR:Q9U5L1 IntAct:Q9U5L1 MINT:MINT-765133
STRING:Q9U5L1 PaxDb:Q9U5L1 EnsemblMetazoa:FBtr0073480 GeneID:47251
KEGG:dme:Dmel_CG2522 CTD:47251 FlyBase:FBgn0010391
GeneTree:ENSGT00550000074936 InParanoid:Q9U5L1 OrthoDB:EOG4W0VV7
PhylomeDB:Q9U5L1 GenomeRNAi:47251 NextBio:838983 Bgee:Q9U5L1
GermOnline:CG2522 Uniprot:Q9U5L1
Length = 614
Score = 118 (46.6 bits), Expect = 0.00037, P = 0.00037
Identities = 33/94 (35%), Positives = 49/94 (52%)
Query: 1 MMDELKDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIG----------ITGAILTKL 50
+M L + +V NP VL V +A+ G EA + FN + I G +LTK
Sbjct: 508 LMRSLSKLIKVNNPDLVLFVGEALVGNEAVDQLVKFNQSLADYSSNENPHIIDGIVLTKF 567
Query: 51 DG-DSRGGAALSVKEVSGKPIKLVGRGERMEDLE 83
D D + GAA+S+ ++G+PI VG G+ DL+
Sbjct: 568 DTIDDKVGAAISMTYITGQPIVFVGTGQTYADLK 601
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.315 0.131 0.354 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 289 279 0.00081 115 3 11 23 0.40 34
33 0.41 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 57
No. of states in DFA: 494 (53 KB)
Total size of DFA: 133 KB (2087 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 27.75u 0.10s 27.85t Elapsed: 00:00:01
Total cpu time: 27.76u 0.10s 27.86t Elapsed: 00:00:01
Start: Sat May 11 03:53:25 2013 End: Sat May 11 03:53:26 2013