BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 022952
(289 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P37107|SR54C_ARATH Signal recognition particle 54 kDa protein, chloroplastic
OS=Arabidopsis thaliana GN=FFC PE=1 SV=1
Length = 564
Score = 517 bits (1331), Expect = e-146, Method: Compositional matrix adjust.
Identities = 248/289 (85%), Positives = 277/289 (95%)
Query: 1 MMDELKDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAAL 60
MMDELKDVK+ LNPTEVLLVVDAMTGQEAAALVTTFN+EIGITGAILTKLDGDSRGGAAL
Sbjct: 276 MMDELKDVKKFLNPTEVLLVVDAMTGQEAAALVTTFNVEIGITGAILTKLDGDSRGGAAL 335
Query: 61 SVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQ 120
SVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKA EVM+QEDAE++Q
Sbjct: 336 SVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKATEVMRQEDAEDLQ 395
Query: 121 KKIMSANFDFNDFLKQTRTVARMGSMSRVIGMIPGMGKITPAQVREAEKSLKIMEAMIEA 180
KKIMSA FDFNDFLKQTR VA+MGSM+RV+GMIPGMGK++PAQ+REAEK+L +MEAMIE
Sbjct: 396 KKIMSAKFDFNDFLKQTRAVAKMGSMTRVLGMIPGMGKVSPAQIREAEKNLLVMEAMIEV 455
Query: 181 MTPEEREKPELLAESPVRRKRVAQDSGKTEQQVSQLVAQLFQMRVRMKNLMGVMEGGSLP 240
MTPEERE+PELLAESP RRKR+A+DSGKTEQQVS LVAQ+FQMRV+MKNLMGVMEGGS+P
Sbjct: 456 MTPEERERPELLAESPERRKRIAKDSGKTEQQVSALVAQIFQMRVKMKNLMGVMEGGSIP 515
Query: 241 ALSNLEDALKSEQKAPPGTARRKRRSESRRQFVDPASTRPSPRGFGGGS 289
ALS LEDALK+EQKAPPGTARRKR+++SR++FV+ AS++P PRGFG G+
Sbjct: 516 ALSGLEDALKAEQKAPPGTARRKRKADSRKKFVESASSKPGPRGFGSGN 564
>sp|P74214|SRP54_SYNY3 Signal recognition particle protein OS=Synechocystis sp. (strain
PCC 6803 / Kazusa) GN=ffh PE=3 SV=1
Length = 482
Score = 275 bits (702), Expect = 3e-73, Method: Compositional matrix adjust.
Identities = 132/224 (58%), Positives = 173/224 (77%)
Query: 1 MMDELKDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAAL 60
MM EL ++K+V+ P + LLVVDAMTGQEAA L TF+ +IGITGAILTKLDGD+RGGAAL
Sbjct: 200 MMAELAEIKQVVKPDDTLLVVDAMTGQEAANLTHTFHEQIGITGAILTKLDGDTRGGAAL 259
Query: 61 SVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQ 120
SV+++SG+PIK VG GE++E L+PFYPDR+A RIL MGDVL+ VEKAQE + D E++Q
Sbjct: 260 SVRQISGQPIKFVGVGEKVEALQPFYPDRLASRILNMGDVLTLVEKAQEAIDVGDVEKLQ 319
Query: 121 KKIMSANFDFNDFLKQTRTVARMGSMSRVIGMIPGMGKITPAQVREAEKSLKIMEAMIEA 180
KI+ A FDF+DF+KQ R + MGS+ ++ MIPGM K++ + + EK LK EAMI +
Sbjct: 320 NKILEATFDFDDFIKQMRFMKNMGSLGGLLKMIPGMNKLSSGDIEKGEKELKRTEAMISS 379
Query: 181 MTPEEREKPELLAESPVRRKRVAQDSGKTEQQVSQLVAQLFQMR 224
MT EER+ P+LLA+SP RR+R+AQ SG +E VS+L+ +MR
Sbjct: 380 MTTEERKNPDLLAKSPSRRRRIAQGSGHSETDVSKLITNFTKMR 423
>sp|Q55311|SRP54_SYNE7 Signal recognition particle protein OS=Synechococcus elongatus
(strain PCC 7942) GN=ffh PE=3 SV=1
Length = 485
Score = 261 bits (666), Expect = 5e-69, Method: Compositional matrix adjust.
Identities = 129/211 (61%), Positives = 165/211 (78%), Gaps = 1/211 (0%)
Query: 1 MMDELKDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAAL 60
MM+EL VK + P EVLLVVD+M GQEAA+L +F+ IGITGAILTKLDGDSRGGAAL
Sbjct: 200 MMEELAQVKEAIAPHEVLLVVDSMIGQEAASLTRSFHERIGITGAILTKLDGDSRGGAAL 259
Query: 61 SVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQ 120
S++ VSG+PIK VG GE++E L+PF+P+RMA RILGMGDVL+ VEKAQE + D E+MQ
Sbjct: 260 SIRRVSGQPIKFVGLGEKVEALQPFHPERMASRILGMGDVLTLVEKAQEEIDLADVEKMQ 319
Query: 121 KKIMSANFDFNDFLKQTRTVARMGSMSRVIGMIPGM-GKITPAQVREAEKSLKIMEAMIE 179
+KI++A FDF DFLKQ R + MGS++ I +IPG+ GKI Q+R+ E+ LK +EAMI
Sbjct: 320 EKILAAKFDFTDFLKQMRLLKNMGSLAGFIKLIPGLGGKINDEQLRQGERQLKRVEAMIN 379
Query: 180 AMTPEEREKPELLAESPVRRKRVAQDSGKTE 210
+MTP+ER P+LL+ SP RR R+A+ G+TE
Sbjct: 380 SMTPQERRDPDLLSNSPSRRHRIAKGCGQTE 410
>sp|Q54431|SRP54_STRMU Signal recognition particle protein OS=Streptococcus mutans
serotype c (strain ATCC 700610 / UA159) GN=ffh PE=3 SV=3
Length = 516
Score = 223 bits (569), Expect = 9e-58, Method: Compositional matrix adjust.
Identities = 113/238 (47%), Positives = 163/238 (68%), Gaps = 8/238 (3%)
Query: 1 MMDELKDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAAL 60
+M EL+D+K + NP E+LLVVD+M GQEAA + FN ++ +TG ILTK+DGD+RGGAAL
Sbjct: 202 LMTELRDIKALANPNEILLVVDSMIGQEAANVAREFNQQLEVTGVILTKIDGDTRGGAAL 261
Query: 61 SVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQ 120
SV++++GKPIK G GE++ D+E F+PDRM+ RILGMGD+L+ +EKA + ++ + E+
Sbjct: 262 SVRQITGKPIKFTGTGEKITDIETFHPDRMSSRILGMGDLLTLIEKASQDYDEQKSAELA 321
Query: 121 KKIMSANFDFNDFLKQTRTVARMGSMSRVIGMIPGMGKITP--AQVREAEKSLKIMEAMI 178
+K+ +FDFNDF++Q V MGSM ++ MIPGM P A V+ E + A++
Sbjct: 322 EKMRENSFDFNDFIEQLDQVQNMGSMEDILKMIPGMAN-NPALANVKVDEGEIARKRAIV 380
Query: 179 EAMTPEEREKPELLAESPVRRKRVAQDSGKTEQQVSQLVAQLFQMRVRMKNLMGVMEG 236
+MTPEERE P+LL +P RR+R+A SG T V++ + Q + K + GVM G
Sbjct: 381 SSMTPEERENPDLL--TPSRRRRIASGSGNTFVNVNKFIKDFNQAK---KMMQGVMSG 433
>sp|P37105|SRP54_BACSU Signal recognition particle protein OS=Bacillus subtilis (strain
168) GN=ffh PE=1 SV=1
Length = 446
Score = 220 bits (560), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 108/237 (45%), Positives = 172/237 (72%), Gaps = 3/237 (1%)
Query: 1 MMDELKDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAAL 60
+MDEL +VK + NP E+ LVVD+MTGQ+A + +FN ++G+TG +LTKLDGD+RGGAAL
Sbjct: 202 LMDELTNVKEIANPEEIFLVVDSMTGQDAVNVAKSFNEQLGLTGVVLTKLDGDTRGGAAL 261
Query: 61 SVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQ 120
S++ V+ PIK G GE+++ LEPF+P+RMA RILGMGDVL+ +EKAQ + ++ A+E++
Sbjct: 262 SIRAVTNTPIKFAGLGEKLDALEPFHPERMASRILGMGDVLTLIEKAQASVDEDKAKELE 321
Query: 121 KKIMSANFDFNDFLKQTRTVARMGSMSRVIGMIPGMGKITPAQ-VREAEKSLKIMEAMIE 179
+K+ + +F +DFL+Q V MG + ++ M+PG GK+ + ++ EK L +EA+I+
Sbjct: 322 QKMRTMSFTLDDFLEQLGQVRNMGPLDELLQMMPGAGKMKGLKNIQVDEKQLNHVEAIIK 381
Query: 180 AMTPEEREKPELLAESPVRRKRVAQDSGKTEQQVSQLVAQLFQMRVRMKNLMGVMEG 236
+MT E+E+P+++ S RRKR+A+ SG + Q+V++L+ Q +M+ MK + + +G
Sbjct: 382 SMTVLEKEQPDIINAS--RRKRIAKGSGTSVQEVNRLLKQFDEMKKMMKQMTNMSKG 436
>sp|O67615|SRP54_AQUAE Signal recognition particle protein OS=Aquifex aeolicus (strain
VF5) GN=ffh PE=3 SV=1
Length = 454
Score = 217 bits (553), Expect = 7e-56, Method: Compositional matrix adjust.
Identities = 111/247 (44%), Positives = 167/247 (67%), Gaps = 10/247 (4%)
Query: 1 MMDELKDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAAL 60
+M EL+++K V NP+E+L V DAM GQ A TF+ +G+TG ++TK+DGD+RGG AL
Sbjct: 195 LMKELQEIKEVTNPSEILYVADAMQGQTALETAKTFHERLGLTGVVITKMDGDARGGLAL 254
Query: 61 SVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQ 120
SVKEV G PIK +G GE++ED+EPFYPDR+A RILG+GD+ S VEKAQEV+ ++ A+ M
Sbjct: 255 SVKEVLGVPIKFIGVGEKIEDIEPFYPDRIAQRILGLGDIQSLVEKAQEVITEDKAQVMA 314
Query: 121 KKIMSANFDFNDFLKQTRTVARMGSMSRVIGMIPGMGKITP--AQVREAEKSLKIMEAMI 178
K+M+ FD D + R + +MG + +++ MIPG + P ++ EK K +EA+I
Sbjct: 315 TKVMTGEFDLEDLREMLRMIQQMGPLDKLLSMIPG---VAPQLKHLKVDEKQFKKIEAII 371
Query: 179 EAMTPEEREKPELLAESPVRRKRVAQDSGKTEQQVSQLVAQLFQMRVRMKNLMGVMEGGS 238
+MTPEER P+++ S R+KR+A+ SG T V++L+ + +M+ M+ L + G
Sbjct: 372 NSMTPEERRNPKIINMS--RKKRIARGSGTTVSDVNKLLKRYEEMKKMMRKL---QKAGG 426
Query: 239 LPALSNL 245
+PA+ +
Sbjct: 427 MPAIPKM 433
>sp|P0AGD7|SRP54_ECOLI Signal recognition particle protein OS=Escherichia coli (strain
K12) GN=ffh PE=1 SV=1
Length = 453
Score = 209 bits (533), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 110/227 (48%), Positives = 155/227 (68%), Gaps = 6/227 (2%)
Query: 1 MMDELKDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAAL 60
MMDE+K V +NP E L VVDAMTGQ+AA FN + +TG +LTK+DGD+RGGAAL
Sbjct: 201 MMDEIKQVHASINPVETLFVVDAMTGQDAANTAKAFNEALPLTGVVLTKVDGDARGGAAL 260
Query: 61 SVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQ 120
S++ ++GKPIK +G GE+ E LEPF+PDR+A RILGMGDVLS +E + + + AE++
Sbjct: 261 SIRHITGKPIKFLGVGEKTEALEPFHPDRIASRILGMGDVLSLIEDIESKVDRAQAEKLA 320
Query: 121 KKIMSAN-FDFNDFLKQTRTVARMGSMSRVIGMIPGMGKITPAQVREA--EKSLKIMEAM 177
K+ + FD NDFL+Q R + MG M+ ++G +PGMG+I P V+ +K L MEA+
Sbjct: 321 SKLKKGDGFDLNDFLEQLRQMKNMGGMASLMGKLPGMGQI-PDNVKSQMDDKVLVRMEAI 379
Query: 178 IEAMTPEEREKPELLAESPVRRKRVAQDSGKTEQQVSQLVAQLFQMR 224
I +MT +ER KPE++ S R++R+A G Q V++L+ Q M+
Sbjct: 380 INSMTMKERAKPEIIKGS--RKRRIAAGCGMQVQDVNRLLKQFDDMQ 424
>sp|P0AGD8|SRP54_ECOL6 Signal recognition particle protein OS=Escherichia coli O6:H1
(strain CFT073 / ATCC 700928 / UPEC) GN=ffh PE=3 SV=1
Length = 453
Score = 209 bits (533), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 110/227 (48%), Positives = 155/227 (68%), Gaps = 6/227 (2%)
Query: 1 MMDELKDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAAL 60
MMDE+K V +NP E L VVDAMTGQ+AA FN + +TG +LTK+DGD+RGGAAL
Sbjct: 201 MMDEIKQVHASINPVETLFVVDAMTGQDAANTAKAFNEALPLTGVVLTKVDGDARGGAAL 260
Query: 61 SVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQ 120
S++ ++GKPIK +G GE+ E LEPF+PDR+A RILGMGDVLS +E + + + AE++
Sbjct: 261 SIRHITGKPIKFLGVGEKTEALEPFHPDRIASRILGMGDVLSLIEDIESKVDRAQAEKLA 320
Query: 121 KKIMSAN-FDFNDFLKQTRTVARMGSMSRVIGMIPGMGKITPAQVREA--EKSLKIMEAM 177
K+ + FD NDFL+Q R + MG M+ ++G +PGMG+I P V+ +K L MEA+
Sbjct: 321 SKLKKGDGFDLNDFLEQLRQMKNMGGMASLMGKLPGMGQI-PDNVKSQMDDKVLVRMEAI 379
Query: 178 IEAMTPEEREKPELLAESPVRRKRVAQDSGKTEQQVSQLVAQLFQMR 224
I +MT +ER KPE++ S R++R+A G Q V++L+ Q M+
Sbjct: 380 INSMTMKERAKPEIIKGS--RKRRIAAGCGMQVQDVNRLLKQFDDMQ 424
>sp|P0AGD9|SRP54_ECO57 Signal recognition particle protein OS=Escherichia coli O157:H7
GN=ffh PE=3 SV=1
Length = 453
Score = 209 bits (533), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 110/227 (48%), Positives = 155/227 (68%), Gaps = 6/227 (2%)
Query: 1 MMDELKDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAAL 60
MMDE+K V +NP E L VVDAMTGQ+AA FN + +TG +LTK+DGD+RGGAAL
Sbjct: 201 MMDEIKQVHASINPVETLFVVDAMTGQDAANTAKAFNEALPLTGVVLTKVDGDARGGAAL 260
Query: 61 SVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQ 120
S++ ++GKPIK +G GE+ E LEPF+PDR+A RILGMGDVLS +E + + + AE++
Sbjct: 261 SIRHITGKPIKFLGVGEKTEALEPFHPDRIASRILGMGDVLSLIEDIESKVDRAQAEKLA 320
Query: 121 KKIMSAN-FDFNDFLKQTRTVARMGSMSRVIGMIPGMGKITPAQVREA--EKSLKIMEAM 177
K+ + FD NDFL+Q R + MG M+ ++G +PGMG+I P V+ +K L MEA+
Sbjct: 321 SKLKKGDGFDLNDFLEQLRQMKNMGGMASLMGKLPGMGQI-PDNVKSQMDDKVLVRMEAI 379
Query: 178 IEAMTPEEREKPELLAESPVRRKRVAQDSGKTEQQVSQLVAQLFQMR 224
I +MT +ER KPE++ S R++R+A G Q V++L+ Q M+
Sbjct: 380 INSMTMKERAKPEIIKGS--RKRRIAAGCGMQVQDVNRLLKQFDDMQ 424
>sp|Q92J55|SRP54_RICCN Signal recognition particle protein OS=Rickettsia conorii (strain
ATCC VR-613 / Malish 7) GN=ffh PE=3 SV=1
Length = 449
Score = 206 bits (525), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 104/233 (44%), Positives = 163/233 (69%), Gaps = 6/233 (2%)
Query: 1 MMDELKDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAAL 60
MM+E +K+++ PTE LLV+D+MTGQ+A ++FN ++ I+G IL+++DGDS+GGAAL
Sbjct: 202 MMEEALAIKKIVEPTETLLVIDSMTGQDAVVTASSFNEKLAISGLILSRIDGDSKGGAAL 261
Query: 61 SVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQ 120
SVK ++ KPIK + GE + DLE F +R+A RIL MGD++SFVEKA ++ +E+AE+
Sbjct: 262 SVKYITKKPIKFLSSGENLIDLEEFDAERLASRILDMGDIISFVEKAASIVDREEAEKTA 321
Query: 121 KKIMSANFDFNDFLKQTRTVARMGSMSRVIGMIPGMGKITPAQVREAEKSLKIM---EAM 177
K+ FD ND+L+Q R++ +MG ++ M+PG GKI Q+ +++ + KI+ EA+
Sbjct: 322 AKLKKGKFDLNDYLQQMRSIKKMGGFGSILSMLPGSGKIMD-QIDQSKLNSKIIEHQEAI 380
Query: 178 IEAMTPEEREKPELLAESPVRRKRVAQDSGKTEQQVSQLVAQLFQMRVRMKNL 230
I +MTP+ER+ P+++ S RRKR+A +G T Q+V+ L+ Q Q+ MK +
Sbjct: 381 ILSMTPKERKNPDIINAS--RRKRIAVGAGTTVQKVNILLKQYKQISEIMKKV 431
>sp|Q4UKH4|SRP54_RICFE Signal recognition particle protein OS=Rickettsia felis (strain
ATCC VR-1525 / URRWXCal2) GN=ffh PE=3 SV=2
Length = 449
Score = 205 bits (522), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 104/231 (45%), Positives = 161/231 (69%), Gaps = 6/231 (2%)
Query: 1 MMDELKDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAAL 60
MM+E +K+++ PTE LLV+D+MTGQ+A +FN ++ I+G IL+++DGDS+GGAAL
Sbjct: 202 MMEEALAIKKIVEPTETLLVIDSMTGQDAVVTANSFNEKLEISGLILSRIDGDSKGGAAL 261
Query: 61 SVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQ 120
SVK ++ KPIK + GE++ DLE F +R+A RIL MGD++SFVEKA ++ +E+AE+
Sbjct: 262 SVKYITKKPIKFLSSGEKLTDLEEFDAERLASRILDMGDIISFVEKAASIVDREEAEKTA 321
Query: 121 KKIMSANFDFNDFLKQTRTVARMGSMSRVIGMIPGMGKITPAQVREAEKSLKIM---EAM 177
K+ FD ND+L+Q R++ +MG ++ M+PG GKI Q+ +++ + KI+ EA+
Sbjct: 322 AKLKKGKFDLNDYLQQMRSIKKMGGFGSILSMLPGSGKIMD-QIDQSKLNSKIIEHQEAI 380
Query: 178 IEAMTPEEREKPELLAESPVRRKRVAQDSGKTEQQVSQLVAQLFQMRVRMK 228
I +MT +ERE P+++ S RRKR+A +G T Q+V+ L+ Q Q+ MK
Sbjct: 381 ILSMTLKERENPDIINAS--RRKRIAAGAGTTVQKVNILLKQYKQISEMMK 429
>sp|Q9ZDZ0|SRP54_RICPR Signal recognition particle protein OS=Rickettsia prowazekii
(strain Madrid E) GN=ffh PE=3 SV=1
Length = 449
Score = 204 bits (518), Expect = 9e-52, Method: Compositional matrix adjust.
Identities = 104/231 (45%), Positives = 162/231 (70%), Gaps = 6/231 (2%)
Query: 1 MMDELKDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAAL 60
MM+E +K++LNPTE LLV+D+MTGQ+A TF+ ++ I+G IL+++DGD++GGAAL
Sbjct: 202 MMEEALAIKKILNPTETLLVIDSMTGQDAVITAKTFSEKLEISGLILSRIDGDTKGGAAL 261
Query: 61 SVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQ 120
SVK + KPIK + GE++ DLE F +R+A RIL MGD++SFV+KA ++ +E+AE+
Sbjct: 262 SVKYFTQKPIKFLSSGEKLTDLEEFNAERLASRILDMGDIISFVKKAASIVDREEAEKTA 321
Query: 121 KKIMSANFDFNDFLKQTRTVARMGSMSRVIGMIPGMGKITPAQVREAEKSLKIM---EAM 177
K+ S FD ND+L+Q R++ +MG ++ M+PG GKI Q+ +++ + KI+ EA+
Sbjct: 322 IKLKSGKFDLNDYLQQMRSIKKMGGFGSILSMLPGSGKIFD-QIDQSKLNSKIIEHQEAI 380
Query: 178 IEAMTPEEREKPELLAESPVRRKRVAQDSGKTEQQVSQLVAQLFQMRVRMK 228
I +MT +ER+ P+++ S RRKR+A +G T Q+V+ L+ Q Q+ MK
Sbjct: 381 ILSMTLKERKNPDIINAS--RRKRIAAGAGMTVQKVNILLKQYKQISAVMK 429
>sp|O07347|SRP54_THEAQ Signal recognition particle protein OS=Thermus aquaticus GN=ffh
PE=1 SV=3
Length = 430
Score = 202 bits (514), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 107/230 (46%), Positives = 157/230 (68%), Gaps = 11/230 (4%)
Query: 1 MMDELKDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAAL 60
+M EL +K VL P EVLLV+DAMTGQEA ++ F+ ++G+TG +LTKLDGD+RGGAAL
Sbjct: 198 LMGELARLKEVLGPDEVLLVLDAMTGQEALSVARAFDEKVGVTGLVLTKLDGDARGGAAL 257
Query: 61 SVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQ 120
S + V+GKPI G E+ E LEPFYP+R+AGRILGMGDV S EK + + +A +
Sbjct: 258 SARHVTGKPIYFAGVSEKPEGLEPFYPERLAGRILGMGDVASLAEKVRAAGLEAEAPKSA 317
Query: 121 KKIMSANFDFNDFLKQTRTVARMGSMSRVIGMIPGMGKITPAQVREAEKSLKIMEAMIEA 180
K++ DFLKQ + + R+G S ++G++PG+ P ++ EK++K +EA++ +
Sbjct: 318 KEL-----SLEDFLKQMQNLKRLGPFSEILGLLPGV----PQGLKVDEKAIKRLEAIVLS 368
Query: 181 MTPEEREKPELLAESPVRRKRVAQDSGKTEQQVSQLVAQLFQMRVRMKNL 230
MTPEER+ P +L S RRKR+A+ SG + Q+V++ + +M+ MK+L
Sbjct: 369 MTPEERKDPRILNGS--RRKRIAKGSGTSVQEVNRFIKAFEEMKALMKSL 416
>sp|Q1RHD6|SRP54_RICBR Signal recognition particle protein OS=Rickettsia bellii (strain
RML369-C) GN=ffh PE=3 SV=1
Length = 449
Score = 201 bits (512), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 101/231 (43%), Positives = 160/231 (69%), Gaps = 6/231 (2%)
Query: 1 MMDELKDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAAL 60
MM+E +K+++ PTE LLV+D+MTGQ+A ++FN ++ I+G IL+++DGDS+GGAAL
Sbjct: 202 MMNEAIAIKKIVEPTETLLVIDSMTGQDAVVTASSFNEQLEISGLILSRIDGDSKGGAAL 261
Query: 61 SVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQ 120
SVK ++ +PIK + GE++ DLE F R+A RIL MGD++SFVEKA ++ +E AE+
Sbjct: 262 SVKYITQRPIKFLSSGEKLTDLEEFDAKRIASRILDMGDIISFVEKAASIVDREQAEKTA 321
Query: 121 KKIMSANFDFNDFLKQTRTVARMGSMSRVIGMIPGMGKITPAQVREAEKSLKIM---EAM 177
K+ FD ND+L+Q +++ ++G ++ M+PG GKI Q+ +++ + KI+ EA+
Sbjct: 322 AKLKKGKFDLNDYLQQMKSIKKIGGFGSILSMLPGSGKIMD-QIDQSKLNSKIIEHQEAI 380
Query: 178 IEAMTPEEREKPELLAESPVRRKRVAQDSGKTEQQVSQLVAQLFQMRVRMK 228
I +MTP+ER P+++ S RRKR+A +G T Q+V+ L+ Q Q+ MK
Sbjct: 381 ILSMTPKERRNPDIINAS--RRKRIALGAGTTVQKVNILLKQFKQISDMMK 429
>sp|Q68XJ4|SRP54_RICTY Signal recognition particle protein OS=Rickettsia typhi (strain
ATCC VR-144 / Wilmington) GN=ffh PE=3 SV=1
Length = 449
Score = 201 bits (510), Expect = 7e-51, Method: Compositional matrix adjust.
Identities = 102/231 (44%), Positives = 160/231 (69%), Gaps = 6/231 (2%)
Query: 1 MMDELKDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAAL 60
MM+E +K++LNPTE LLV+D+MTGQ+A +F+ ++ I+G IL+++DGD++GGAAL
Sbjct: 202 MMEEALAIKKILNPTETLLVIDSMTGQDAVVTARSFSDKLEISGLILSRIDGDTKGGAAL 261
Query: 61 SVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQ 120
SVK ++ KPIK + GE++ DLE F +R+A RIL MGD++SFV+KA ++ +E+AE
Sbjct: 262 SVKYLTQKPIKFLSCGEKLTDLEEFDAERLASRILDMGDIISFVKKAASIVDREEAERTA 321
Query: 121 KKIMSANFDFNDFLKQTRTVARMGSMSRVIGMIPGMGKITPAQVREAEKSLKIM---EAM 177
K+ S FD ND+LK R++ +MG ++ M+PG GKI Q+ +++ +I+ EA+
Sbjct: 322 IKLKSGKFDLNDYLKHMRSIKKMGGFGSILSMLPGSGKIID-QIDQSKLDSRIIEHQEAI 380
Query: 178 IEAMTPEEREKPELLAESPVRRKRVAQDSGKTEQQVSQLVAQLFQMRVRMK 228
I +MT +ER+ P+++ S RRKR+A +G T Q+V+ L+ Q Q+ MK
Sbjct: 381 ILSMTLKERKNPDIINAS--RRKRIAAGAGMTVQKVNILLKQYKQISAVMK 429
>sp|O33013|SRP54_MYCLE Signal recognition particle protein OS=Mycobacterium leprae (strain
TN) GN=ffh PE=3 SV=1
Length = 521
Score = 199 bits (506), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 103/234 (44%), Positives = 151/234 (64%), Gaps = 2/234 (0%)
Query: 1 MMDELKDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAAL 60
+M + ++ +NP EVL V+DAM GQ+A F +G TG +LTKLDGD+RGGAAL
Sbjct: 207 LMAQAGAIREAINPDEVLFVLDAMIGQDAVTTAAAFGAGVGFTGVVLTKLDGDARGGAAL 266
Query: 61 SVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQ 120
SV+EV+G PI GE+++D + F+PDRMA RILGMGDVLS +E+A++V E AE
Sbjct: 267 SVREVTGVPILFATTGEKLDDFDVFHPDRMASRILGMGDVLSLIEQAEQVFDAEQAEAAA 326
Query: 121 KKIMSANFDFNDFLKQTRTVARMGSMSRVIGMIPGMGKITPAQVREAEKSLKIMEAMIEA 180
KI++ DFL+Q V +MG + ++GM+PG G++ + +K L ++A+I
Sbjct: 327 AKIVAGELTLEDFLEQMLAVRKMGLIGNLLGMLPGAGQVKEVLEQVDDKQLDRLQAIIRG 386
Query: 181 MTPEEREKPELLAESPVRRKRVAQDSGKTEQQVSQLVAQLFQMRVRMKNLMGVM 234
MTP+ER P+++ S RR R+A SG T +V+QLV + F+ R M +++G M
Sbjct: 387 MTPQERADPKIINAS--RRLRIANGSGVTVSEVNQLVDRFFEARKMMSSVLGGM 438
>sp|Q9ZK62|SRP54_HELPJ Signal recognition particle protein OS=Helicobacter pylori (strain
J99) GN=ffh PE=3 SV=1
Length = 448
Score = 197 bits (502), Expect = 5e-50, Method: Compositional matrix adjust.
Identities = 101/239 (42%), Positives = 155/239 (64%), Gaps = 8/239 (3%)
Query: 1 MMDELKDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAAL 60
+M ELK+VK VLNP EVL V DA++GQ+ TFN EIG++G +L+K D DS+GG AL
Sbjct: 193 LMQELKEVKEVLNPHEVLYVADALSGQDGVKSANTFNEEIGVSGVVLSKFDSDSKGGIAL 252
Query: 61 SVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQ 120
+ G P++ +G GE++ DL+ F P+R+ GR++G GD++S EK V+ +A+++
Sbjct: 253 GITYQLGLPLRFIGSGEKIPDLDVFMPERIVGRLMGAGDIISLAEKTASVLNPNEAKDLS 312
Query: 121 KKIMSANFDFNDFLKQTRTVARMGSMSRVIGMIPGMGKITPA-QVREAEKSLKI--MEAM 177
KK+ F FNDFL Q V ++GSMS +I MIPG+G + A + + E SL++ ++AM
Sbjct: 313 KKLKKGQFTFNDFLNQIEKVKKLGSMSSLISMIPGLGNMASALKDTDLESSLEVKKIKAM 372
Query: 178 IEAMTPEEREKPELLAESPVRRKRVAQDSGKTEQQVSQLVAQLFQ---MRVRMKNLMGV 233
+ +MT +ERE PE+L S RRKR+A SG ++++++ + Q M R+ N G+
Sbjct: 373 VNSMTKKERENPEILNGS--RRKRIALGSGLEVSEINRIIKRFDQASKMAKRLTNKKGI 429
>sp|P66844|SRP54_MYCTU Signal recognition particle protein OS=Mycobacterium tuberculosis
GN=ffh PE=1 SV=1
Length = 525
Score = 196 bits (499), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 104/234 (44%), Positives = 149/234 (63%), Gaps = 2/234 (0%)
Query: 1 MMDELKDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAAL 60
+M + ++ +NP EVL V+DAM GQ+A F +G TG LTKLDGD+RGGAAL
Sbjct: 207 LMAQAAAIRDAINPDEVLFVLDAMIGQDAVTTAAAFGEGVGFTGVALTKLDGDARGGAAL 266
Query: 61 SVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQ 120
SV+EV+G PI GE++ED + F+PDRMA RILGMGDVLS +E+A++V + AEE
Sbjct: 267 SVREVTGVPILFASTGEKLEDFDVFHPDRMASRILGMGDVLSLIEQAEQVFDAQQAEEAA 326
Query: 121 KKIMSANFDFNDFLKQTRTVARMGSMSRVIGMIPGMGKITPAQVREAEKSLKIMEAMIEA 180
KI + DFL+Q V +MG + ++GM+PG ++ A +K L ++A+I
Sbjct: 327 AKIGAGELTLEDFLEQMLAVRKMGPIGNLLGMLPGAAQMKDALAEVDDKQLDRVQAIIRG 386
Query: 181 MTPEEREKPELLAESPVRRKRVAQDSGKTEQQVSQLVAQLFQMRVRMKNLMGVM 234
MTP+ER P+++ S RR R+A SG T +V+QLV + F+ R M +++G M
Sbjct: 387 MTPQERADPKIINAS--RRLRIANGSGVTVSEVNQLVERFFEARKMMSSMLGGM 438
>sp|P66845|SRP54_MYCBO Signal recognition particle protein OS=Mycobacterium bovis (strain
ATCC BAA-935 / AF2122/97) GN=ffh PE=3 SV=1
Length = 525
Score = 196 bits (499), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 104/234 (44%), Positives = 149/234 (63%), Gaps = 2/234 (0%)
Query: 1 MMDELKDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAAL 60
+M + ++ +NP EVL V+DAM GQ+A F +G TG LTKLDGD+RGGAAL
Sbjct: 207 LMAQAAAIRDAINPDEVLFVLDAMIGQDAVTTAAAFGEGVGFTGVALTKLDGDARGGAAL 266
Query: 61 SVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQ 120
SV+EV+G PI GE++ED + F+PDRMA RILGMGDVLS +E+A++V + AEE
Sbjct: 267 SVREVTGVPILFASTGEKLEDFDVFHPDRMASRILGMGDVLSLIEQAEQVFDAQQAEEAA 326
Query: 121 KKIMSANFDFNDFLKQTRTVARMGSMSRVIGMIPGMGKITPAQVREAEKSLKIMEAMIEA 180
KI + DFL+Q V +MG + ++GM+PG ++ A +K L ++A+I
Sbjct: 327 AKIGAGELTLEDFLEQMLAVRKMGPIGNLLGMLPGAAQMKDALAEVDDKQLDRVQAIIRG 386
Query: 181 MTPEEREKPELLAESPVRRKRVAQDSGKTEQQVSQLVAQLFQMRVRMKNLMGVM 234
MTP+ER P+++ S RR R+A SG T +V+QLV + F+ R M +++G M
Sbjct: 387 MTPQERADPKIINAS--RRLRIANGSGVTVSEVNQLVERFFEARKMMSSMLGGM 438
>sp|P56005|SRP54_HELPY Signal recognition particle protein OS=Helicobacter pylori (strain
ATCC 700392 / 26695) GN=ffh PE=3 SV=1
Length = 448
Score = 195 bits (496), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 99/239 (41%), Positives = 155/239 (64%), Gaps = 8/239 (3%)
Query: 1 MMDELKDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAAL 60
+M ELK+VK +LNP EVL V DA++GQ+ TFN EIG++G +L+K D DS+GG AL
Sbjct: 193 LMQELKEVKEILNPHEVLYVADALSGQDGVKSANTFNEEIGVSGVVLSKFDSDSKGGIAL 252
Query: 61 SVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQ 120
+ G P++ +G GE++ DL+ F P+R+ GR++G GD++S EK V+ +A+++
Sbjct: 253 GITYQLGLPLRFIGSGEKIPDLDVFVPERIVGRLMGAGDIVSLAEKTASVLNPNEAKDLS 312
Query: 121 KKIMSANFDFNDFLKQTRTVARMGSMSRVIGMIPGMGKITPA-QVREAEKSLKI--MEAM 177
KK+ F FNDFL Q V ++GSMS +I MIPG+G + A + + E SL++ ++AM
Sbjct: 313 KKLKKGQFTFNDFLNQIEKVKKLGSMSSLISMIPGLGNMASALKDTDLESSLEVKKIKAM 372
Query: 178 IEAMTPEEREKPELLAESPVRRKRVAQDSGKTEQQVSQLVAQLFQ---MRVRMKNLMGV 233
+ +MT +E+E PE+L S RRKR+A SG ++++++ + Q M R+ N G+
Sbjct: 373 VNSMTKKEQENPEILNGS--RRKRIALGSGLEVSEINRIIKRFDQASKMAKRLTNKKGI 429
>sp|P44518|SRP54_HAEIN Signal recognition particle protein OS=Haemophilus influenzae
(strain ATCC 51907 / DSM 11121 / KW20 / Rd) GN=ffh PE=3
SV=1
Length = 462
Score = 184 bits (467), Expect = 7e-46, Method: Compositional matrix adjust.
Identities = 103/232 (44%), Positives = 152/232 (65%), Gaps = 4/232 (1%)
Query: 1 MMDELKDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAAL 60
MMDE+K V LNP E L VDAMTGQ+AA FN + +TG ILTK+DGD+RGGAAL
Sbjct: 201 MMDEIKQVHAALNPIETLFTVDAMTGQDAANTAKAFNEALPLTGVILTKVDGDARGGAAL 260
Query: 61 SVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQ 120
S+++++GKPIK +G GE+ E LEPF+PDR+A RILGMGDVLS +E + + +E AE+M
Sbjct: 261 SIRQITGKPIKFLGVGEKTEALEPFHPDRVASRILGMGDVLSLIEDLERSVDREKAEKMA 320
Query: 121 KKIMSA-NFDFNDFLKQTRTVARMGSMSRVIGMIPGMGKITPAQVREAEKSLKI-MEAMI 178
+K +F +DF +Q + +MG M ++ +PG ++ + + + + MEA+I
Sbjct: 321 QKFKKGDDFTLDDFREQLIEMKKMGGMMSMLEKLPGAKNLSEHVKNQVDDKMFVKMEAII 380
Query: 179 EAMTPEEREKPELLAESPVRRKRVAQDSGKTEQQVSQLVAQLFQMRVRMKNL 230
+MT +ER P+++ S RR+R+A SG Q V++L+ Q +M+ MK +
Sbjct: 381 NSMTLKERANPDIIKGS--RRRRIALGSGTQVQDVNKLLKQFDEMQRMMKKM 430
>sp|P47294|SRP54_MYCGE Signal recognition particle protein OS=Mycoplasma genitalium
(strain ATCC 33530 / G-37 / NCTC 10195) GN=ffh PE=3 SV=1
Length = 446
Score = 177 bits (450), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 87/240 (36%), Positives = 152/240 (63%)
Query: 1 MMDELKDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAAL 60
+MDEL VK LNP E+++VVD ++GQE + TF+ + +TG I++KLD D+R GAAL
Sbjct: 199 LMDELVSVKNELNPDEIIMVVDGLSGQEIINVAQTFHKRLKLTGFIISKLDSDARAGAAL 258
Query: 61 SVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQ 120
S+ + PIKL+G E+++ LE F+P+R+A RILG+GDV+S VEKA++V ++D +
Sbjct: 259 SLASLLQVPIKLIGVSEKLDGLEQFHPERIANRILGLGDVMSLVEKAEQVFDKKDLTKTI 318
Query: 121 KKIMSANFDFNDFLKQTRTVARMGSMSRVIGMIPGMGKITPAQVREAEKSLKIMEAMIEA 180
K+ D D L + + +MGS+S +I M+P ++ E +++ + +I +
Sbjct: 319 SKMFLGKMDLEDLLIYMQQMHKMGSVSSLIKMLPANFSVSEENAELIENKIELWKVLINS 378
Query: 181 MTPEEREKPELLAESPVRRKRVAQDSGKTEQQVSQLVAQLFQMRVRMKNLMGVMEGGSLP 240
MT EER P+L+ P R++R+ + SG+ ++++L+ + +M+++ + +++ GS P
Sbjct: 379 MTREERRHPKLINRDPNRKQRIIKGSGRKMDELNKLMKEWNKMQLKATEMGKLLKTGSNP 438
>sp|P75054|SRP54_MYCPN Signal recognition particle protein OS=Mycoplasma pneumoniae
(strain ATCC 29342 / M129) GN=ffh PE=3 SV=1
Length = 450
Score = 174 bits (442), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 86/240 (35%), Positives = 149/240 (62%)
Query: 1 MMDELKDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAAL 60
+MDEL +K L+P E+L+VVD ++GQE + F+ + +TG I+TKLD D+R GAAL
Sbjct: 199 LMDELVAIKNELHPDEILMVVDGLSGQEIINVAKEFHNRLKLTGFIITKLDSDARAGAAL 258
Query: 61 SVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQ 120
S+ + PIKL+G E++ LE F+P+R+A RILG+GDV++ VEKA+EV ++ +
Sbjct: 259 SLTSLLEVPIKLMGTSEKLTGLEQFHPERIASRILGLGDVMTLVEKAEEVFDKQSLTKTV 318
Query: 121 KKIMSANFDFNDFLKQTRTVARMGSMSRVIGMIPGMGKITPAQVREAEKSLKIMEAMIEA 180
K+ D D L + +MGS+S ++ M+PG ++ V E +K+ + +I +
Sbjct: 319 SKMFLGKMDLEDLLLYMEQMNQMGSVSSIVKMLPGNLTVSDDHVESIEAKVKLWKVLINS 378
Query: 181 MTPEEREKPELLAESPVRRKRVAQDSGKTEQQVSQLVAQLFQMRVRMKNLMGVMEGGSLP 240
MT EER P+L+ P R++R+ + SG+ ++++L+ + +++ + + +++GG P
Sbjct: 379 MTREERRHPKLINRDPSRKQRIIKGSGRKMDELNKLMKEWSKLQTKTAEMGRMLKGGKNP 438
>sp|Q01442|SRP54_MYCMY Signal recognition particle protein OS=Mycoplasma mycoides GN=ffh
PE=1 SV=1
Length = 447
Score = 173 bits (438), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 82/243 (33%), Positives = 156/243 (64%), Gaps = 2/243 (0%)
Query: 1 MMDELKDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAAL 60
+M EL ++K+ +P E+LLVVD M+GQE + FN ++ ++G ++TKLDGD+RGGA L
Sbjct: 201 LMKELDNLKKKTSPNEILLVVDGMSGQEIINVTNEFNDKLKLSGVVVTKLDGDARGGATL 260
Query: 61 SVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQ 120
S+ ++ PIK +G GE L FYP RMA R++GMGD+ + E+A E + + ++
Sbjct: 261 SISYLTKLPIKFIGEGEGYNALAAFYPKRMADRLMGMGDIETLFERAVENIDERSIQKTM 320
Query: 121 KKIMSANFDFNDFLKQTRTVARMGSMSRVIGMIPGMGKITPAQVREAEKSLKIMEAMIEA 180
++ FD D Q +A+MGS+++++ M+P + K++ +Q++EA++ L + ++++
Sbjct: 321 NRMFLGQFDLEDLRNQLAQIAKMGSLNKLMKMLP-INKVSESQIQEAQRKLAVFSILMDS 379
Query: 181 MTPEEREKPELLAESPVRRKRVAQDSGKTEQQVSQLVAQLFQMRVRMKNLMGVMEGGSLP 240
MT +ER P +L ++ R+ R+ + SG++E++ ++L+ + + ++ + +++ G +P
Sbjct: 380 MTLKERRDPRVL-KAISRKNRIIKGSGRSEKEFNELINSFEKGKKQVLEITKMIKSGRMP 438
Query: 241 ALS 243
LS
Sbjct: 439 NLS 441
>sp|P57473|SRP54_BUCAI Signal recognition particle protein OS=Buchnera aphidicola subsp.
Acyrthosiphon pisum (strain APS) GN=ffh PE=3 SV=1
Length = 451
Score = 168 bits (426), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 88/233 (37%), Positives = 148/233 (63%), Gaps = 5/233 (2%)
Query: 1 MMDELKDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAAL 60
MM+E++ ++ + E LL+VD+M GQ+A + FN ++ I+G ILTK DGDSR G AL
Sbjct: 201 MMNEIQQIQVISKAIETLLIVDSMMGQDAINMAKIFNNDLLISGIILTKTDGDSRSGIAL 260
Query: 61 SVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQ 120
S++ ++GKPIK +G GE++ LEPF+P+R+A RILGM D++S +E +E + Q +++
Sbjct: 261 SMRYITGKPIKFIGTGEKIISLEPFHPERIADRILGMNDIMSLIEDIEEKVDQSQIQKLT 320
Query: 121 KKIMSAN-FDFNDFLKQTRTVARMGSMSRVIGMIPGMGKITP--AQVREAEKSLKIMEAM 177
KK+ + F+ NDFL Q + + ++G ++ +++ + + + +LK +EAM
Sbjct: 321 KKLKKGHDFNLNDFLTQIKQMKKIGGLNYFANKFSINHQLSNNISLLNTDKNTLKKIEAM 380
Query: 178 IEAMTPEEREKPELLAESPVRRKRVAQDSGKTEQQVSQLVAQLFQMRVRMKNL 230
I +MTP+ER KP ++ S R++R+A SG Q V++L+ +R MK +
Sbjct: 381 ICSMTPKERIKPIIIKGS--RKRRIALGSGTQIQDVNKLLKNFDDIRRIMKKI 431
>sp|B6YSS1|SRP54_THEON Signal recognition particle 54 kDa protein OS=Thermococcus
onnurineus (strain NA1) GN=srp54 PE=3 SV=1
Length = 448
Score = 165 bits (417), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 91/232 (39%), Positives = 139/232 (59%), Gaps = 4/232 (1%)
Query: 1 MMDELKDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAAL 60
+++E+K + + P EV+LV+D GQ+A F I I+TKLDG ++GG AL
Sbjct: 200 LIEEMKQISAAIKPHEVILVIDGTIGQQAYNQALAFKEATPIGSIIVTKLDGSAKGGGAL 259
Query: 61 SVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVM-QQEDAEEM 119
S +G PIK +G GER++DLEPF P R R+LG+GD+ +EK +E+ QQE EE
Sbjct: 260 SAVAATGAPIKFIGVGERIDDLEPFDPKRFVSRLLGLGDIQGLLEKFEELQKQQEFREED 319
Query: 120 QKKIMSANFDFNDFLKQTRTVARMGSMSRVIGMIPGMGKITPAQ-VREAEKSLKIMEAMI 178
+K + F+ D Q + +MG + +++ MIPGMG P VR E+ LK + ++
Sbjct: 320 LEKFLKGKFNLKDMYAQLEAMQKMGPLKQILQMIPGMGYSLPDDAVRVGEERLKKFKVIM 379
Query: 179 EAMTPEEREKPELLAESPVRRKRVAQDSGKTEQQVSQLVAQLFQMRVRMKNL 230
++MT EE E PE++ S R KR+A+ SG + Q+V +L+ Q QM+ K++
Sbjct: 380 DSMTEEELEHPEIINYS--RIKRIARGSGTSIQEVRELLHQYNQMKKMFKSM 429
>sp|C5A233|SRP54_THEGJ Signal recognition particle 54 kDa protein OS=Thermococcus
gammatolerans (strain DSM 15229 / JCM 11827 / EJ3)
GN=srp54 PE=3 SV=1
Length = 448
Score = 165 bits (417), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 89/232 (38%), Positives = 140/232 (60%), Gaps = 4/232 (1%)
Query: 1 MMDELKDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAAL 60
+++E+K + + P EV+LV+D GQ+A F I I+TKLDG ++GG AL
Sbjct: 200 LIEEMKQISEAIKPHEVILVIDGTIGQQAYHQALAFKEATPIGSIIVTKLDGSAKGGGAL 259
Query: 61 SVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVM-QQEDAEEM 119
S +G PIK +G GE+++DLEPF P R R+LG+GD+ +EK +E+ +QE EE
Sbjct: 260 SAVAATGAPIKFIGVGEKIDDLEPFDPKRFVSRLLGLGDIQGLLEKIEELQKEQEFKEED 319
Query: 120 QKKIMSANFDFNDFLKQTRTVARMGSMSRVIGMIPGMGKITPAQ-VREAEKSLKIMEAMI 178
+K + F+ D Q + +MG + +++ MIPG+G P + VR E+ L+ ++
Sbjct: 320 VEKFLRGKFNLKDMYAQLEAMQKMGPLKQILQMIPGLGYSLPDEAVRVGEEKLRRYRIIM 379
Query: 179 EAMTPEEREKPELLAESPVRRKRVAQDSGKTEQQVSQLVAQLFQMRVRMKNL 230
++MT EE E P+++ S R KR+A+ SG + ++V +L+AQ QMR KNL
Sbjct: 380 DSMTEEELENPDIINYS--RIKRIARGSGTSTREVRELLAQYNQMRKMFKNL 429
>sp|Q89AE4|SRP54_BUCBP Signal recognition particle protein OS=Buchnera aphidicola subsp.
Baizongia pistaciae (strain Bp) GN=ffh PE=3 SV=1
Length = 450
Score = 163 bits (413), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 83/222 (37%), Positives = 134/222 (60%), Gaps = 4/222 (1%)
Query: 1 MMDELKDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAAL 60
MM+EL DV + +P E V DAM GQ++ ++ FN + ++ I+TK D D+R G L
Sbjct: 201 MMNELLDVYNISHPIETFFVADAMFGQDSINVINEFNKYLPVSSFIITKTDSDTRAGIIL 260
Query: 61 SVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQ 120
S+K ++ KPIK +G GE++E+LE FYPDR+A RILGMGD+LS +E + + ++ ++
Sbjct: 261 SIKYLTKKPIKFIGTGEKLEELELFYPDRIASRILGMGDMLSLIENIENKIDKKHIKKFS 320
Query: 121 KKIMSAN-FDFNDFLKQTRTVARMGSMSRVIGMIPGMGKITPA-QVREAEKSLKIMEAMI 178
I N F+FND L + ++G ++ ++G +P I + Q E L M+ +I
Sbjct: 321 NTIKKYNTFNFNDMLLHINQIKKIGGVNSILGKLPKTQTIFNSFQNNIDENILLKMKTII 380
Query: 179 EAMTPEEREKPELLAESPVRRKRVAQDSGKTEQQVSQLVAQL 220
+MT ER +PEL+ S R++R++ SG +++QL+ Q
Sbjct: 381 NSMTISERHQPELIKGS--RKRRISLGSGIPIPEINQLLKQF 420
>sp|Q5JJC8|SRP54_PYRKO Signal recognition particle 54 kDa protein OS=Pyrococcus
kodakaraensis (strain ATCC BAA-918 / JCM 12380 / KOD1)
GN=srp54 PE=3 SV=1
Length = 448
Score = 163 bits (412), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 89/232 (38%), Positives = 138/232 (59%), Gaps = 4/232 (1%)
Query: 1 MMDELKDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAAL 60
+++E++ + + P EV+LV+D GQ+A F I I+TKLDG ++GG AL
Sbjct: 200 LIEEMRQISEAIKPHEVILVIDGTIGQQAYNQAMAFKEATPIGSIIVTKLDGSAKGGGAL 259
Query: 61 SVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVM-QQEDAEEM 119
S +G PIK +G GER++DLEPF P R R+LG+GD+ +EK +E+ +QE EE
Sbjct: 260 SAVAATGAPIKFIGTGERIDDLEPFDPKRFVSRLLGLGDIQGLLEKIEELQKEQEFREED 319
Query: 120 QKKIMSANFDFNDFLKQTRTVARMGSMSRVIGMIPGMGKITPAQ-VREAEKSLKIMEAMI 178
+K + F+ D Q + +MG + +++ MIPG+G P VR E+ LK + ++
Sbjct: 320 MEKFLRGKFNLKDMYAQLEAMQKMGPLKQILQMIPGLGYSLPEDAVRVGEEKLKRYKVIM 379
Query: 179 EAMTPEEREKPELLAESPVRRKRVAQDSGKTEQQVSQLVAQLFQMRVRMKNL 230
++MT EE E PE++ S R KR+A+ SG T +V +L+ Q QM+ K+L
Sbjct: 380 DSMTEEELENPEIINYS--RIKRIARGSGATTAEVRELLNQYNQMKKMFKSL 429
>sp|Q57565|SRP54_METJA Signal recognition particle 54 kDa protein OS=Methanocaldococcus
jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM
10045 / NBRC 100440) GN=srp54 PE=1 SV=1
Length = 451
Score = 160 bits (405), Expect = 9e-39, Method: Compositional matrix adjust.
Identities = 86/219 (39%), Positives = 132/219 (60%), Gaps = 5/219 (2%)
Query: 1 MMDELKDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAIL-TKLDGDSRGGAA 59
+++E+K +K + NP E++LV+D GQ+A F +G G+I+ TKLDG ++GG A
Sbjct: 199 LLEEMKQIKEITNPDEIILVIDGTIGQQAGIQAKAFKEAVGEIGSIIVTKLDGSAKGGGA 258
Query: 60 LSVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEM 119
LS + PIK +G GE ++DLEPF P + R+LGMGD+ S +EKA++ M E EE
Sbjct: 259 LSAVAETKAPIKFIGIGEGIDDLEPFDPKKFISRLLGMGDLESLLEKAED-MVDEKTEES 317
Query: 120 QKKIMSANFDFNDFLKQTRTVARMGSMSRVIGMIPGMGKITPAQVRE-AEKSLKIMEAMI 178
IM F N+ + Q + MGSM +++ MIPG G P ++ E +K + +I
Sbjct: 318 IDAIMRGKFTLNELMTQLEAIENMGSMKKILSMIPGFGGAMPKELSHLTEAKIKKYKVII 377
Query: 179 EAMTPEEREKPELLAESPVRRKRVAQDSGKTEQQVSQLV 217
+MT EERE P+++ S +R R+A+ SG TE V +++
Sbjct: 378 SSMTKEERENPKIIKASRIR--RIARGSGTTENDVREVL 414
>sp|Q8K9F7|SRP54_BUCAP Signal recognition particle protein OS=Buchnera aphidicola subsp.
Schizaphis graminum (strain Sg) GN=ffh PE=3 SV=1
Length = 450
Score = 158 bits (399), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 81/223 (36%), Positives = 135/223 (60%), Gaps = 6/223 (2%)
Query: 1 MMDELKDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAAL 60
MM+E+ ++ + P E LL+VD+M GQ+A + F+ + I+G ++TK D D+R G AL
Sbjct: 201 MMNEINTIQNISKPIETLLIVDSMMGQDAINIAKKFSASLSISGIVITKTDSDARSGVAL 260
Query: 61 SVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQ 120
S++ ++GKPIK +G GE++ LEPF+P+R+A RILGM V+S ++ +E + Q + +
Sbjct: 261 SIRHITGKPIKFIGTGEKLHQLEPFHPERIADRILGMNQVISLIKDIEEKVNQSQVKNLT 320
Query: 121 KKIMSA-NFDFNDFLKQTRTVARMGSMSRVIGMIPGMGKITPAQ--VREAEKSLKIMEAM 177
KK +F+ NDFL Q + + MG+++ I KI + E + +L +EA+
Sbjct: 321 KKFRKGDDFNLNDFLIQLKEMKNMGNLNYFIEKFSK-NKILSNNPLLGENKNTLNRIEAI 379
Query: 178 IEAMTPEEREKPELLAESPVRRKRVAQDSGKTEQQVSQLVAQL 220
I +MT +ER P ++ S R++R+A SG Q V++L+
Sbjct: 380 IYSMTHKERMHPIIIKGS--RKRRIALGSGTKIQDVNKLLKNF 420
>sp|A6UWG4|SRP54_META3 Signal recognition particle 54 kDa protein OS=Methanococcus
aeolicus (strain Nankai-3 / ATCC BAA-1280) GN=srp54 PE=3
SV=1
Length = 450
Score = 154 bits (388), Expect = 9e-37, Method: Compositional matrix adjust.
Identities = 81/232 (34%), Positives = 139/232 (59%), Gaps = 5/232 (2%)
Query: 1 MMDELKDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAIL-TKLDGDSRGGAA 59
+++E+K++K NP E++LV+D GQ+A F + G+IL TK+DG ++GG A
Sbjct: 199 LLEEMKEMKEKFNPEEIILVIDGTLGQQAKNQAKAFKDAVENIGSILITKMDGSAKGGGA 258
Query: 60 LSVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEM 119
LS G PIK +G GE+++DLEPF P + R+LGMGD+ S +EK ++++ +D EE
Sbjct: 259 LSAVAEIGAPIKFIGTGEKVDDLEPFDPKKFISRLLGMGDLDSLLEKTEDII-DDDTEES 317
Query: 120 QKKIMSANFDFNDFLKQTRTVARMGSMSRVIGMIPGMGKITPAQVRE-AEKSLKIMEAMI 178
+M F N+ Q +++MGSM +++ MIPGMG P + E LK + ++
Sbjct: 318 LDAMMRGKFTLNELYSQLEAISKMGSMKQLMAMIPGMGTNLPKGAADITEHKLKKYKIIM 377
Query: 179 EAMTPEEREKPELLAESPVRRKRVAQDSGKTEQQVSQLVAQLFQMRVRMKNL 230
++MT E+E P+++ S R KR+A+ +G ++++ +L+ + +N+
Sbjct: 378 DSMTSTEKENPDIIKTS--RMKRIAKGAGVKQEEIKELLKYYSTTKNAFQNM 427
>sp|A6UQJ8|SRP54_METVS Signal recognition particle 54 kDa protein OS=Methanococcus
vannielii (strain SB / ATCC 35089 / DSM 1224) GN=srp54
PE=3 SV=1
Length = 450
Score = 152 bits (383), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 89/245 (36%), Positives = 144/245 (58%), Gaps = 11/245 (4%)
Query: 1 MMDELKDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAIL-TKLDGDSRGGAA 59
+++E+K +K + NP E++LV+D GQ+A F + G+IL TKLDG ++GG A
Sbjct: 199 LLEEMKQMKEITNPNEIILVIDGTLGQQAKNQAKAFKDAVSEIGSILVTKLDGSAKGGGA 258
Query: 60 LS-VKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEE 118
LS V E++ PIK +G GE +++LE F P + R+LGMGD+ S +EK ++VM E EE
Sbjct: 259 LSAVAEINA-PIKFIGTGEGVDNLETFDPKKFISRLLGMGDLDSLLEKTEDVM-DESTEE 316
Query: 119 MQKKIMSANFDFNDFLKQTRTVARMGSMSRVIGMIPGMGKITPAQVRE-AEKSLKIMEAM 177
I+ F + Q T+++MG M +++GMIPG G P + + E+ LK + M
Sbjct: 317 SIDSILKGKFTLVELYAQLETISKMGPMKQIMGMIPGFGGNMPKEAAQLTEQKLKRYKIM 376
Query: 178 IEAMTPEEREKPELLAESPVRRKRVAQDSGKTEQQVSQLVAQLFQMRVRMKNLMGVMEGG 237
+++MT EE+E PEL+ S R +R+A+ +G + ++ L + KN G ++ G
Sbjct: 377 MDSMTMEEKENPELIKTS--RLQRIAKGAGVKQDEIK----DLLKYYATTKNAFGNLKRG 430
Query: 238 SLPAL 242
+P +
Sbjct: 431 KMPKM 435
>sp|A6VHE0|SRP54_METM7 Signal recognition particle 54 kDa protein OS=Methanococcus
maripaludis (strain C7 / ATCC BAA-1331) GN=srp54 PE=3
SV=1
Length = 450
Score = 150 bits (379), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 87/244 (35%), Positives = 141/244 (57%), Gaps = 9/244 (3%)
Query: 1 MMDELKDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAIL-TKLDGDSRGGAA 59
++ E++++K + NPTE++LV+D GQ+A F + G+IL TKLDG ++GG A
Sbjct: 199 LLAEMREMKDLTNPTEIILVIDGTLGQQAKNQAKAFKESVSEIGSILVTKLDGSAKGGGA 258
Query: 60 LSVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEM 119
LS PIK +G GE +++LE F P + RILGMGD+ S +EK +++M E EE
Sbjct: 259 LSAVAEINAPIKFIGTGEGVDNLEQFDPKKFISRILGMGDLDSLLEKTEDIM-DESTEES 317
Query: 120 QKKIMSANFDFNDFLKQTRTVARMGSMSRVIGMIPGMGKITPAQVRE-AEKSLKIMEAMI 178
I+ F + Q T+++MG M +++ MIPGMG P + + E LK + M+
Sbjct: 318 IDSILKGKFTLIELYAQLETISKMGPMKQILSMIPGMGGNLPKEAAQLTEDKLKRYKIMM 377
Query: 179 EAMTPEEREKPELLAESPVRRKRVAQDSGKTEQQVSQLVAQLFQMRVRMKNLMGVMEGGS 238
++MT EE+E PEL+ S R +R+A+ +G ++++ L + KN G ++ G
Sbjct: 378 DSMTMEEKENPELIKAS--RLQRIAKGAGVKQEEIK----DLLKYYSTTKNAFGNLKRGK 431
Query: 239 LPAL 242
+P +
Sbjct: 432 MPKM 435
>sp|Q8U070|SRP54_PYRFU Signal recognition particle 54 kDa protein OS=Pyrococcus furiosus
(strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1) GN=srp54
PE=1 SV=1
Length = 443
Score = 150 bits (378), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 83/232 (35%), Positives = 137/232 (59%), Gaps = 4/232 (1%)
Query: 1 MMDELKDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAAL 60
+++E+K + V++P EV+LV+D GQ+A F I I+TKLDG ++GG AL
Sbjct: 200 LIEEMKQISNVIHPHEVILVIDGTIGQQAYNQALAFKEATPIGSIIVTKLDGSAKGGGAL 259
Query: 61 SVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQ-EDAEEM 119
S +G PIK +G GE+++D+EPF P R R+LG+GD+ +EK +E+ ++ E EE
Sbjct: 260 SAVAATGAPIKFIGTGEKIDDIEPFDPPRFVSRLLGLGDIQGLLEKFKELEKEVEIKEED 319
Query: 120 QKKIMSANFDFNDFLKQTRTVARMGSMSRVIGMIPGMGKITPAQVRE-AEKSLKIMEAMI 178
++ + F D Q + +MG + +++ MIPG+G P V E+ LK + ++
Sbjct: 320 IERFLRGKFTLKDMYAQLEAMRKMGPLKQILRMIPGLGYSLPDDVISIGEERLKKFKVIM 379
Query: 179 EAMTPEEREKPELLAESPVRRKRVAQDSGKTEQQVSQLVAQLFQMRVRMKNL 230
++MT EE PE++ S R KR+A+ SG + + V +L+ Q QM+ K++
Sbjct: 380 DSMTEEELLNPEIINYS--RIKRIARGSGTSTKDVKELLDQYRQMKKLFKSM 429
>sp|A9A9B0|SRP54_METM6 Signal recognition particle 54 kDa protein OS=Methanococcus
maripaludis (strain C6 / ATCC BAA-1332) GN=srp54 PE=3
SV=1
Length = 450
Score = 147 bits (372), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 87/244 (35%), Positives = 139/244 (56%), Gaps = 9/244 (3%)
Query: 1 MMDELKDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAIL-TKLDGDSRGGAA 59
++ E+K++K + NP E++LV+D GQ+A F + G+IL TKLDG ++GG A
Sbjct: 199 LLAEMKEMKDLTNPNEIILVIDGTLGQQAKNQAKAFKDSVSEIGSILVTKLDGSAKGGGA 258
Query: 60 LSVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEM 119
LS PIK +G GE +++LE F P + RILG GD+ S +EK +++M E AEE
Sbjct: 259 LSAVAEINAPIKFIGTGEGVDNLEQFDPKKFISRILGFGDLDSLLEKTEDIM-DESAEES 317
Query: 120 QKKIMSANFDFNDFLKQTRTVARMGSMSRVIGMIPGMGKITPAQVRE-AEKSLKIMEAMI 178
I+ F + Q T+++MG M +++ MIPGMG P + + E LK + M+
Sbjct: 318 IDSILKGKFTLIELYAQLETISKMGPMKQILSMIPGMGGNMPKEAAQLTEDKLKRYKIMM 377
Query: 179 EAMTPEEREKPELLAESPVRRKRVAQDSGKTEQQVSQLVAQLFQMRVRMKNLMGVMEGGS 238
++MT EE+E PEL+ S R +R+A+ +G +++ L + KN G ++ G
Sbjct: 378 DSMTMEEKENPELIKTS--RLQRIARGAGVKPEEIK----DLLKYYSTTKNAFGNLKRGK 431
Query: 239 LPAL 242
+P +
Sbjct: 432 MPKM 435
>sp|Q9HKT0|SRP54_THEAC Signal recognition particle 54 kDa protein OS=Thermoplasma
acidophilum (strain ATCC 25905 / DSM 1728 / JCM 9062 /
NBRC 15155 / AMRC-C165) GN=srp54 PE=3 SV=1
Length = 456
Score = 147 bits (372), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 83/238 (34%), Positives = 137/238 (57%), Gaps = 8/238 (3%)
Query: 1 MMDELKDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAAL 60
+ DE++ +K + P EVL+++DA GQ+A FN IG+TG I+TK+DG ++GG AL
Sbjct: 195 LFDEIRRIKEAVAPDEVLMIIDATMGQQAGPEAKAFNDAIGVTGIIITKMDGTAKGGGAL 254
Query: 61 SVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEV-MQQEDAEEM 119
S PI +G GE M+DLE F P + R+LG+GD+ S E QE + +E+A+E
Sbjct: 255 SAVAEIHVPIYFIGTGEHMDDLEVFDPKKFLSRLLGLGDLESLFETVQEADITEEEAQES 314
Query: 120 QKKIMSANFDFNDFLKQTRTVARMGSMSRVI-----GMIPGMGKITPAQVREAEKSLKIM 174
+K+M+ F+ D ++ G M +++ IPG KI ++++ AE L++
Sbjct: 315 FEKLMTGKFNLKDMYDVWEKFSKPGLMKKLVDALPLARIPGSQKIDDSKIQSAEDKLRMY 374
Query: 175 EAMIEAMTPEEREKPELLAESPVRRKRVAQDSGKTEQQVSQLVAQLFQMRVRMKNLMG 232
++++MT EE E PE++ + R R+A+ +G E+ V L+ + M+ MK + G
Sbjct: 375 RIIMDSMTFEELENPEII--NAKRITRIARGAGVREEDVRMLLKEFKAMKNNMKMMKG 430
>sp|Q0W2G1|SRP54_UNCMA Signal recognition particle 54 kDa protein OS=Uncultured
methanogenic archaeon RC-I GN=srp54 PE=3 SV=1
Length = 444
Score = 145 bits (367), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 82/220 (37%), Positives = 130/220 (59%), Gaps = 7/220 (3%)
Query: 1 MMDELKDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAAL 60
++ E+KD+ + LLV+DA GQ+A+ FN IGITG ++TKLDG ++GG AL
Sbjct: 195 LIQEMKDIYGLTKFDHKLLVLDAAIGQQASEQARAFNDAIGITGVVITKLDGTAKGGGAL 254
Query: 61 SVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQ 120
S + I +G GE +D+E F PD R+LGMGD+ + VE+A EV+Q++D
Sbjct: 255 SAVSDTNTSIAFIGVGETPDDMERFDPDGFISRLLGMGDLRALVERANEVLQKDDVN--V 312
Query: 121 KKIMSANFDFNDFLKQTRTVARMGSMSRVIGMIP--GM-GKITPAQVREAEKSLKIMEAM 177
+K+M F ND Q + +MG + +++ M+P G+ G IT + + LK + +
Sbjct: 313 EKMMQGKFTLNDMYDQLEAINKMGPLKQIMSMLPLGGLGGNITDDMYKMTQDKLKGYKVI 372
Query: 178 IEAMTPEEREKPELLAESPVRRKRVAQDSGKTEQQVSQLV 217
+++MT ER+ P+L+ S R RVA SGK+ ++V +L+
Sbjct: 373 MDSMTAAERDDPKLIGSS--RIARVAHGSGKSPEEVRELL 410
>sp|A5UMY7|SRP54_METS3 Signal recognition particle 54 kDa protein OS=Methanobrevibacter
smithii (strain PS / ATCC 35061 / DSM 861) GN=srp54 PE=3
SV=2
Length = 445
Score = 144 bits (363), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 81/230 (35%), Positives = 130/230 (56%), Gaps = 6/230 (2%)
Query: 2 MDELKDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAALS 61
MD L D+ + PTE +LV+D GQ+A F+ + I+TKLDG ++GG A+S
Sbjct: 201 MDTLDDI---IQPTESILVIDGTIGQQAGEQAKAFSQATDVGSIIITKLDGSAKGGGAMS 257
Query: 62 VKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQK 121
+G PIK +G GER++D E F P R R+LGMGD+ + +EKA++ + ++ AE+ K
Sbjct: 258 AVAETGAPIKFIGTGERIDDFELFDPARFISRLLGMGDIQTLIEKAEDSIDEDMAEKTMK 317
Query: 122 KIMSANFDFNDFLKQTRTVARMGSMSRVIGMIPGMG-KITPAQVREAEKSLKIMEAMIEA 180
+MS F D Q + MG M +V+ MIPG+G K++ + E + + ++ +
Sbjct: 318 NMMSGKFTLVDMKNQFEMMNSMGPMQQVLSMIPGLGNKVSKEASKMTEDKIDGYKVIMSS 377
Query: 181 MTPEEREKPELLAESPVRRKRVAQDSGKTEQQVSQLVAQLFQMRVRMKNL 230
MT +E E P+L+ +S +R R+A +G E +V L+ + MK +
Sbjct: 378 MTKKEMENPKLIKQSRIR--RIAMGAGVEESEVRDLLKYYNNTKKTMKGI 425
>sp|Q2NE47|SRP54_METST Signal recognition particle 54 kDa protein OS=Methanosphaera
stadtmanae (strain DSM 3091) GN=srp54 PE=3 SV=1
Length = 444
Score = 144 bits (363), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 79/219 (36%), Positives = 131/219 (59%), Gaps = 5/219 (2%)
Query: 1 MMDELKDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAAL 60
++DE+ ++ +++ P EV+LV+D GQ+A + TF I I++KLDG ++GG AL
Sbjct: 198 LLDEMAELSQIVQPDEVILVIDGTIGQQARSQAETFKKTTDIGSIIVSKLDGSAKGGGAL 257
Query: 61 S-VKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEM 119
S V E+ PIK +G GER++D E F P+R R+LGMGD+ + +EKA EV ++ +EM
Sbjct: 258 SAVAEIRA-PIKFIGTGERVDDFEAFDPERFISRLLGMGDLDTLIEKAAEVTSEKSDKEM 316
Query: 120 QKKIMSANFDFNDFLKQTRTVARMGSMSRVIGMIPGMGKITPAQVRE-AEKSLKIMEAMI 178
I+S F D Q + +MG + +++ +IPG+G PA + E+ L + + ++
Sbjct: 317 IDSIISGKFTLKDMENQLEMMNKMGPIQQIMKLIPGLGNQLPANASKVTEEKLGMYKILM 376
Query: 179 EAMTPEEREKPELLAESPVRRKRVAQDSGKTEQQVSQLV 217
+MT E E PE++ +S R R+++ +G T V L+
Sbjct: 377 NSMTTYELENPEVIKKS--RINRISRGAGLTNDDVKDLL 413
>sp|Q12ZG8|SRP54_METBU Signal recognition particle 54 kDa protein OS=Methanococcoides
burtonii (strain DSM 6242) GN=srp54 PE=3 SV=1
Length = 439
Score = 143 bits (360), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 83/235 (35%), Positives = 131/235 (55%), Gaps = 7/235 (2%)
Query: 1 MMDELKDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAAL 60
++DE++ + + P LLV+D GQ+A+ FN +GI+G +++KLDG ++GG AL
Sbjct: 195 LIDEMEQIHEIAQPDYKLLVLDGAIGQQASEQARAFNDSVGISGVVISKLDGTAKGGGAL 254
Query: 61 SVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQ 120
S + I +G GE +DLE F PDR R+LGMGD+ S +EKA+E + +ED +
Sbjct: 255 SAVSETNSAIAFIGVGETPDDLEKFEPDRFISRLLGMGDIKSLIEKAEETLSEEDID--M 312
Query: 121 KKIMSANFDFNDFLKQTRTVARMGSMSRVIGMIP--GMG-KITPAQVREAEKSLKIMEAM 177
+ +M F D Q + +MG M +++ M+P GMG K++ + E +K +
Sbjct: 313 EAMMRGRFTLKDMYSQLEAMNKMGPMKQIMQMLPLGGMGAKLSDDAYKVTEDKMKGYRVL 372
Query: 178 IEAMTPEEREKPELLAESPVRRKRVAQDSGKTEQQVSQLVAQLFQMRVRMKNLMG 232
+++MT EE P LL S R KR++ SG + V +L+ M+ MK L G
Sbjct: 373 MDSMTEEELLNPRLLGSS--RIKRISLGSGSSPDAVRELLKYYKMMQNAMKGLRG 425
>sp|Q9V1E8|SRP54_PYRAB Signal recognition particle 54 kDa protein OS=Pyrococcus abyssi
(strain GE5 / Orsay) GN=srp54 PE=3 SV=1
Length = 443
Score = 141 bits (356), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 79/232 (34%), Positives = 135/232 (58%), Gaps = 4/232 (1%)
Query: 1 MMDELKDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAAL 60
+++E++ + + P EV+LV+D GQ+A F I I+TKLD ++GG AL
Sbjct: 200 LIEEMRMISNEIKPHEVILVIDGTIGQQAYNQALAFKEATPIGSIIVTKLDSSAKGGGAL 259
Query: 61 SVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQ-EDAEEM 119
S +G PIK +G GE+++DLEPF P R R+LG+GD+ +EK +E+ ++ E EE
Sbjct: 260 SAVAATGAPIKFIGTGEKIDDLEPFDPARFVSRLLGLGDIQGLLEKFKELEKEVEFTEED 319
Query: 120 QKKIMSANFDFNDFLKQTRTVARMGSMSRVIGMIPGMGKITPAQVREA-EKSLKIMEAMI 178
++ + F D Q + +MG + +++ MIPG+G P +V E+ L+ + ++
Sbjct: 320 LERFLKGKFTLKDMYAQLEAMRKMGPLKQILRMIPGLGYSLPDEVISVGEERLRKFKVIM 379
Query: 179 EAMTPEEREKPELLAESPVRRKRVAQDSGKTEQQVSQLVAQLFQMRVRMKNL 230
++MT EE P+++ S R KR+A+ SG + + V +L+ Q QM+ K++
Sbjct: 380 DSMTEEELMNPDIINYS--RIKRIARGSGTSVKDVKELLNQYNQMKKFFKSM 429
>sp|O59307|SRP54_PYRHO Signal recognition particle 54 kDa protein OS=Pyrococcus horikoshii
(strain ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139
/ OT-3) GN=srp54 PE=3 SV=3
Length = 443
Score = 140 bits (354), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 79/232 (34%), Positives = 134/232 (57%), Gaps = 4/232 (1%)
Query: 1 MMDELKDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAAL 60
+++E++ + + P EV+LV+D GQ+A F I I+TKLD ++GG AL
Sbjct: 200 LIEEMRMISEEIRPHEVILVIDGTIGQQAYNQALAFKEATPIGSIIVTKLDSSAKGGGAL 259
Query: 61 SVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQ-EDAEEM 119
S +G PIK +G GE+++DLEPF P R R+LG+GD+ +EK +E+ ++ E EE
Sbjct: 260 SAVAATGAPIKFIGVGEKIDDLEPFDPARFVSRLLGLGDIQGLLEKFKELEKEVEFTEED 319
Query: 120 QKKIMSANFDFNDFLKQTRTVARMGSMSRVIGMIPGMGKITPAQ-VREAEKSLKIMEAMI 178
+ + F D Q + +MG + +++ MIPG+G P + + E+ L+ + ++
Sbjct: 320 IDRFLRGKFTLKDMYAQLEAMRKMGPLKQILRMIPGLGYSLPDELISVGEERLRKFKVIM 379
Query: 179 EAMTPEEREKPELLAESPVRRKRVAQDSGKTEQQVSQLVAQLFQMRVRMKNL 230
++MT EE PE++ S R KR+A+ SG + + V +L+ Q QM+ K++
Sbjct: 380 DSMTEEELMNPEIINYS--RIKRIARGSGTSIKDVKELLTQYNQMKKFFKSM 429
>sp|Q971S9|SRP54_SULTO Signal recognition particle 54 kDa protein OS=Sulfolobus tokodaii
(strain DSM 16993 / JCM 10545 / NBRC 100140 / 7)
GN=srp54 PE=3 SV=2
Length = 445
Score = 140 bits (352), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 82/246 (33%), Positives = 145/246 (58%), Gaps = 13/246 (5%)
Query: 1 MMDELKDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAAL 60
+++E+K++ + P EV+LV+DA GQ+A L + F+ I I+TK+DG ++GG AL
Sbjct: 197 LLEEMKNMYSEIKPDEVILVIDASIGQKAYDLASRFHQASPIGSIIVTKMDGTAKGGGAL 256
Query: 61 SVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQ 120
S +G IK +G GE++++LE F P R RILGMGD+ S +EK + + + E ++
Sbjct: 257 SAVAATGAAIKFIGTGEKLDELEVFNPRRFVSRILGMGDIESIIEKIKGMEEYEQIQKKM 316
Query: 121 KKIMS--ANFDFNDFLKQTRTVARMGSMSRVIGMIPGMG---KITPAQVREAEKSLKIME 175
+++MS A D KQ + +MG +++++ M+PG G +I Q++ E+ +K
Sbjct: 317 EEVMSGKAKLTLRDIYKQLTALRKMGPLNKILQMLPGFGVFSQIPEEQLKLGEEKIKKFL 376
Query: 176 AMIEAMTPEEREKPELLAESPVRRKRVAQDSGKTEQQVSQLVAQ------LFQMRVRMKN 229
++ +MT +E + P ++ +S +R R+A+ SG + ++V +L+ Q L +M R K
Sbjct: 377 VIMNSMTYKELDNPSIIDKSRIR--RIAKGSGTSPEEVKELLKQYQVTNNLLKMVKRRKG 434
Query: 230 LMGVME 235
L + E
Sbjct: 435 LAKLFE 440
>sp|A4YHL0|SRP54_METS5 Signal recognition particle 54 kDa protein OS=Metallosphaera sedula
(strain ATCC 51363 / DSM 5348) GN=srp54 PE=3 SV=1
Length = 446
Score = 140 bits (352), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 82/238 (34%), Positives = 140/238 (58%), Gaps = 13/238 (5%)
Query: 1 MMDELKDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAAL 60
+++E+KD+ + P EV+LV+DA GQ+A L F+ + I+TK+DG ++GG AL
Sbjct: 198 LLEEMKDIYEKIKPNEVILVIDASLGQKAYDLAKRFHEASNVGSIIITKMDGTAKGGGAL 257
Query: 61 SVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQ 120
S +G PIK +G GE++++LE F P R RILGMGD+ + +EK + + ED E +Q
Sbjct: 258 SAVAATGAPIKFIGVGEKIDELEVFNPRRFVARILGMGDLEAIIEKMKAM---EDYEGIQ 314
Query: 121 KK---IMS--ANFDFNDFLKQTRTVARMGSMSRVIGMIPG---MGKITPAQVREAEKSLK 172
KK +M+ + D KQ V +MG +S+++ +IPG MG I QV+ E+ ++
Sbjct: 315 KKMGEVMTGKSKLTLRDMYKQIVAVRKMGPLSKILQLIPGMNMMGDIPEDQVKVGEQKMQ 374
Query: 173 IMEAMIEAMTPEEREKPELLAESPVRRKRVAQDSGKTEQQVSQLVAQLFQMRVRMKNL 230
+++ +MT +E + P ++ + R +R+A SG ++V +L+ ++ +K L
Sbjct: 375 RWLSIMNSMTYQELDNPSIIDKQ--RMRRIAMGSGTEVEEVRELIEHFNTVQRTLKML 430
>sp|A0B638|SRP54_METTP Signal recognition particle 54 kDa protein OS=Methanosaeta
thermophila (strain DSM 6194 / PT) GN=srp54 PE=3 SV=1
Length = 444
Score = 138 bits (347), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 83/237 (35%), Positives = 135/237 (56%), Gaps = 7/237 (2%)
Query: 1 MMDELKDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAAL 60
++ E+KD+ V+N LLV+DA GQ+A+ FN +GITG I+TKLDG ++GG AL
Sbjct: 195 LIQEMKDIHAVVNADHKLLVMDAAIGQQASEQARAFNEAVGITGVIITKLDGTAKGGGAL 254
Query: 61 SVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQ 120
S + + +G GE DLE F DR R+LGMGD+ +EKAQEV + D +
Sbjct: 255 SAVAETKTSVAFIGVGETASDLEKFEADRFISRLLGMGDIKGLIEKAQEVQIESDVD--V 312
Query: 121 KKIMSANFDFNDFLKQTRTVARMGSMSRVIGMIP--GMG-KITPAQVREAEKSLKIMEAM 177
+M F D KQ + +MG + +++ M+P G+G +++ + + ++ L+ +
Sbjct: 313 DAMMKGKFTLKDMYKQLEAMNKMGPLKQIMQMLPFGGIGIELSDKEYQVTKERLEAYRFI 372
Query: 178 IEAMTPEEREKPELLAESPVRRKRVAQDSGKTEQQVSQLVAQLFQMRVRMKNLMGVM 234
+++MT EE E P+++ S R KR+A+ SG + V +L+ M+ +K + G M
Sbjct: 373 MDSMTDEELEDPKIINAS--RIKRIARGSGTRPELVKELLKSHAAMQKAIKGMRGGM 427
>sp|Q9YB62|SRP54_AERPE Signal recognition particle 54 kDa protein OS=Aeropyrum pernix
(strain ATCC 700893 / DSM 11879 / JCM 9820 / NBRC 100138
/ K1) GN=srp54 PE=3 SV=1
Length = 441
Score = 137 bits (346), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 77/233 (33%), Positives = 131/233 (56%), Gaps = 5/233 (2%)
Query: 1 MMDELKDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAAL 60
++DE+K + + P EV LV+DA GQ+A L F+ I I+TK+DG +RGG AL
Sbjct: 197 LLDEMKAIASKVRPDEVALVIDASIGQKAMGLAERFHKSTPIGSIIVTKMDGTARGGGAL 256
Query: 61 SVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQ 120
+ V+G IK +G GE + +LEPF P R RILGMGD+ S +E+ + + + + +
Sbjct: 257 TAAAVTGARIKFIGTGETLGELEPFAPRRFVARILGMGDLESLLERIKSLEEAGELDRAA 316
Query: 121 KKIMSANFDFNDFLKQTRTVARMGSMSRVIGMIPG---MGKITPAQVREAEKSLKIMEAM 177
+ ++ +Q R + ++G + +V+ M+PG + I ++ E+ +K A+
Sbjct: 317 EDVLKGRITMRTIYRQLRAMRKLGPLGKVLQMLPGASMLASIDEGALKLGEEKMKRWMAI 376
Query: 178 IEAMTPEEREKPELLAESPVRRKRVAQDSGKTEQQVSQLVAQLFQMRVRMKNL 230
IE+MT EE ++PE++ + R +R+A SG + V +L+ ++ MK L
Sbjct: 377 IESMTYEELDRPEIIDKR--RMRRIAIGSGTSVDDVRELLVYYKNLKTMMKKL 427
>sp|Q8THD0|SRP54_METAC Signal recognition particle 54 kDa protein OS=Methanosarcina
acetivorans (strain ATCC 35395 / DSM 2834 / JCM 12185 /
C2A) GN=srp54 PE=3 SV=1
Length = 440
Score = 137 bits (346), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 80/235 (34%), Positives = 130/235 (55%), Gaps = 7/235 (2%)
Query: 1 MMDELKDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAAL 60
+++E++ + V P +V+DA GQ+A+ FN +GITG I+TKLDG ++GG AL
Sbjct: 195 LIEEMERIHAVAKPDHKFMVLDAGIGQQASQQAHAFNDSVGITGVIITKLDGTAKGGGAL 254
Query: 61 SVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQ 120
S + PI +G GE ED E F DR R+LGMGD+ S +EKA+E + +ED
Sbjct: 255 SAVSETKAPIAFIGVGETPEDFEKFEADRFISRLLGMGDLKSLMEKAEESLSEEDVN--V 312
Query: 121 KKIMSANFDFNDFLKQTRTVARMGSMSRVIGMIP-GMG--KITPAQVREAEKSLKIMEAM 177
+ +M F D KQ + +MG + +++ M+P GMG K + + +K + +
Sbjct: 313 EALMQGRFTLKDMYKQLEAMNKMGPLKQIMSMLPMGMGGMKFSDEMFQATSDKMKNYKVI 372
Query: 178 IEAMTPEEREKPELLAESPVRRKRVAQDSGKTEQQVSQLVAQLFQMRVRMKNLMG 232
+++MT EE P ++ S R KR+++ SG + + V +L+ M+ +K G
Sbjct: 373 MDSMTEEEMTDPRVIGGS--RIKRISKGSGCSSEDVRELLKYHKTMQTALKGFRG 425
>sp|A2STI3|SRP54_METLZ Signal recognition particle 54 kDa protein OS=Methanocorpusculum
labreanum (strain ATCC 43576 / DSM 4855 / Z) GN=srp54
PE=3 SV=1
Length = 446
Score = 137 bits (345), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 84/234 (35%), Positives = 129/234 (55%), Gaps = 7/234 (2%)
Query: 1 MMDELKDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAAL 60
++DE+ V LNP LV+DA GQ A F+ IGI G I+TK+DG ++GG A+
Sbjct: 195 LIDEITQVNAYLNPDHRWLVIDAALGQAARDQAKRFHEAIGIDGVIVTKMDGTAKGGGAM 254
Query: 61 SVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQ 120
S + I +G GE ++DLE F P+ R+LGMGD+ + VEKA+E M ED +
Sbjct: 255 SAVAETQSGIVFIGNGETIDDLERFDPNGFISRLLGMGDLKALVEKAEESMNAEDVD--V 312
Query: 121 KKIMSANFDFNDFLKQTRTVARMGSMSRVIGMIPGMGKIT-PAQVREAEKS-LKIMEAMI 178
++ F ND KQ V +MG + +V+ M+P MG + P+ E +K ++
Sbjct: 313 NAMLRGKFTLNDMYKQLEAVQKMGPLKQVLSMLP-MGNMNVPSDALEGTADKMKKFRIIM 371
Query: 179 EAMTPEEREKPELLAESPVRRKRVAQDSGKTEQQVSQLVAQLFQMRVRMKNLMG 232
++MTP+E ++P L+ S R RVA+ SG + ++V L+ M+ +K G
Sbjct: 372 DSMTPQELDEPALINTS--RMIRVAKGSGSSVEEVRDLIKYYKMMQKTLKGFRG 423
>sp|P70722|SRP54_ACIAM Signal recognition particle 54 kDa protein (Fragment) OS=Acidianus
ambivalens GN=srp54 PE=1 SV=2
Length = 451
Score = 137 bits (344), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 82/238 (34%), Positives = 139/238 (58%), Gaps = 13/238 (5%)
Query: 1 MMDELKDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAAL 60
+++E+K++ + P EV LV+DA GQ+A L + FN I I+TK+DG ++GG AL
Sbjct: 200 LLEEMKNIYEAIKPDEVTLVIDASIGQKAYDLASKFNQASKIGTIIITKMDGTAKGGGAL 259
Query: 61 SVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQ 120
S +G IK +G GE++++LE F P R RILGMGD+ + +EK +EV E+ ++MQ
Sbjct: 260 SAVAATGATIKFIGTGEKIDELEVFNPRRFVARILGMGDIETILEKIKEV---ENYDKMQ 316
Query: 121 KK---IMS--ANFDFNDFLKQTRTVARMGSMSRVIGMIPG---MGKITPAQVREAEKSLK 172
KK ++S D Q + +MG +S++ ++PG +G+I Q++ E+ ++
Sbjct: 317 KKMEEVISGKGKLTLRDVYNQLIALRKMGPLSKLFQLLPGIGMLGQIPEDQLKVGEEKMR 376
Query: 173 IMEAMIEAMTPEEREKPELLAESPVRRKRVAQDSGKTEQQVSQLVAQLFQMRVRMKNL 230
A++ +MT EE + P ++ +S R +R+A SG + V +L+ M+ +K L
Sbjct: 377 KWLAIMNSMTYEELDNPSIIDKS--RMRRIALGSGTEIEDVKELIEHYNLMQRTIKML 432
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.315 0.131 0.353
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 102,329,391
Number of Sequences: 539616
Number of extensions: 4170720
Number of successful extensions: 18181
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 157
Number of HSP's successfully gapped in prelim test: 110
Number of HSP's that attempted gapping in prelim test: 17758
Number of HSP's gapped (non-prelim): 327
length of query: 289
length of database: 191,569,459
effective HSP length: 116
effective length of query: 173
effective length of database: 128,974,003
effective search space: 22312502519
effective search space used: 22312502519
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 61 (28.1 bits)