Query 022952
Match_columns 289
No_of_seqs 206 out of 1652
Neff 4.8
Searched_HMMs 46136
Date Fri Mar 29 07:22:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022952.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/022952hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0541 Ffh Signal recognition 100.0 1.6E-83 3.5E-88 625.1 24.5 231 1-233 200-431 (451)
2 KOG0780 Signal recognition par 100.0 4.1E-79 8.8E-84 587.2 24.0 283 1-289 201-483 (483)
3 PRK00771 signal recognition pa 100.0 1.2E-73 2.5E-78 560.8 24.7 242 1-249 193-435 (437)
4 PRK10867 signal recognition pa 100.0 1.9E-72 4.1E-77 551.7 24.4 227 1-232 201-427 (433)
5 TIGR01425 SRP54_euk signal rec 100.0 3.5E-72 7.6E-77 549.1 21.8 226 1-226 200-429 (429)
6 TIGR00959 ffh signal recogniti 100.0 1.1E-70 2.4E-75 538.6 22.6 227 1-229 200-428 (428)
7 PF02978 SRP_SPB: Signal pepti 100.0 2.7E-37 5.8E-42 251.3 9.5 99 127-227 1-104 (104)
8 COG0552 FtsY Signal recognitio 99.9 7.5E-27 1.6E-31 222.5 9.3 96 1-96 239-340 (340)
9 PF00448 SRP54: SRP54-type pro 99.9 2.4E-25 5.2E-30 197.8 7.2 96 1-96 101-196 (196)
10 PRK14974 cell division protein 99.9 1.1E-24 2.3E-29 208.5 8.2 97 1-97 240-336 (336)
11 PRK06731 flhF flagellar biosyn 99.9 1.2E-23 2.6E-28 196.0 8.4 96 1-97 172-269 (270)
12 TIGR00064 ftsY signal recognit 99.9 2.8E-23 6.2E-28 192.9 8.4 95 1-95 172-272 (272)
13 PRK10416 signal recognition pa 99.9 3E-23 6.6E-28 196.9 8.7 97 1-97 214-316 (318)
14 PRK12723 flagellar biosynthesi 99.9 2.4E-22 5.2E-27 195.7 9.6 104 2-106 273-381 (388)
15 PRK11889 flhF flagellar biosyn 99.9 2.2E-22 4.8E-27 197.0 8.3 96 1-97 338-435 (436)
16 COG1419 FlhF Flagellar GTP-bin 99.8 1.2E-21 2.5E-26 191.2 7.7 95 2-97 300-396 (407)
17 PRK12726 flagellar biosynthesi 99.8 3.5E-21 7.5E-26 187.7 8.2 98 1-99 303-402 (407)
18 PRK14723 flhF flagellar biosyn 99.8 4.6E-21 9.9E-26 199.3 8.3 98 1-98 281-382 (767)
19 PRK14721 flhF flagellar biosyn 99.8 7.3E-21 1.6E-25 187.0 7.9 97 1-98 287-385 (420)
20 PRK12724 flagellar biosynthesi 99.8 1.4E-20 2.9E-25 185.3 7.6 94 2-96 318-416 (432)
21 PRK14722 flhF flagellar biosyn 99.8 1E-19 2.2E-24 176.6 8.4 96 2-97 234-339 (374)
22 PRK06995 flhF flagellar biosyn 99.8 1.5E-19 3.2E-24 180.4 8.0 97 2-99 353-451 (484)
23 PRK05703 flhF flagellar biosyn 99.8 4E-19 8.6E-24 174.6 8.2 96 2-98 318-416 (424)
24 PRK12727 flagellar biosynthesi 99.6 2.6E-16 5.7E-21 158.8 7.6 94 2-97 447-542 (559)
25 KOG0781 Signal recognition par 99.4 1.8E-13 4E-18 136.1 6.1 95 1-95 484-586 (587)
26 cd03115 SRP The signal recogni 99.3 1E-11 2.2E-16 105.9 7.0 73 2-74 101-173 (173)
27 smart00053 DYNc Dynamin, GTPas 91.7 0.37 8E-06 44.8 5.7 60 10-69 157-221 (240)
28 PF02421 FeoB_N: Ferrous iron 88.6 0.53 1.2E-05 41.1 3.8 64 11-74 76-142 (156)
29 COG0106 HisA Phosphoribosylfor 77.2 3.2 6.9E-05 39.1 4.1 109 4-138 113-239 (241)
30 TIGR00735 hisF imidazoleglycer 76.7 21 0.00046 32.8 9.4 111 5-139 113-248 (254)
31 KOG0908 Thioredoxin-like prote 75.5 2.2 4.8E-05 40.7 2.6 107 15-135 20-130 (288)
32 cd01891 TypA_BipA TypA (tyrosi 74.6 6.5 0.00014 33.8 5.2 73 13-86 88-177 (194)
33 cd02985 TRX_CDSP32 TRX family, 72.7 17 0.00036 28.5 6.6 94 3-98 4-103 (103)
34 TIGR00437 feoB ferrous iron tr 69.8 4.8 0.0001 42.0 3.7 71 12-82 71-146 (591)
35 cd04168 TetM_like Tet(M)-like 69.0 15 0.00033 33.5 6.4 113 14-145 88-208 (237)
36 PRK09554 feoB ferrous iron tra 66.7 7.2 0.00016 42.1 4.4 71 12-82 84-159 (772)
37 PF08700 Vps51: Vps51/Vps67; 64.8 59 0.0013 24.6 8.2 81 83-182 4-85 (87)
38 PF00009 GTP_EFTU: Elongation 61.9 23 0.00049 30.4 5.9 38 13-53 93-135 (188)
39 cd04170 EF-G_bact Elongation f 60.7 97 0.0021 28.3 10.1 30 117-146 210-240 (268)
40 PF07200 Mod_r: Modifier of ru 59.4 5.8 0.00013 33.5 1.7 45 101-145 95-141 (150)
41 PRK13587 1-(5-phosphoribosyl)- 59.3 28 0.00061 31.9 6.3 68 5-74 115-199 (234)
42 TIGR03680 eif2g_arch translati 58.9 13 0.00028 36.7 4.2 42 12-54 102-148 (406)
43 PF01972 SDH_sah: Serine dehyd 57.6 12 0.00026 36.1 3.6 124 15-145 91-241 (285)
44 COG1797 CobB Cobyrinic acid a, 57.4 7.5 0.00016 39.6 2.3 90 15-111 112-211 (451)
45 PF06858 NOG1: Nucleolar GTP-b 56.7 29 0.00064 25.9 4.8 48 4-51 3-58 (58)
46 cd00880 Era_like Era (E. coli 56.7 19 0.00041 27.8 4.1 44 12-55 74-119 (163)
47 cd01886 EF-G Elongation factor 56.5 47 0.001 31.1 7.4 29 117-145 212-241 (270)
48 PF01418 HTH_6: Helix-turn-hel 56.5 13 0.00029 28.1 3.1 47 171-219 4-57 (77)
49 cd04163 Era Era subfamily. Er 55.4 30 0.00065 27.3 5.2 42 12-53 81-124 (168)
50 cd04130 Wrch_1 Wrch-1 subfamil 55.2 15 0.00033 30.6 3.5 44 13-57 71-121 (173)
51 cd03556 L-fucose_isomerase L-f 54.1 1.3E+02 0.0028 32.0 10.6 75 19-95 50-154 (584)
52 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 53.8 22 0.00047 29.2 4.2 69 13-81 74-154 (166)
53 cd01884 EF_Tu EF-Tu subfamily. 53.0 32 0.00069 30.5 5.4 40 13-53 88-131 (195)
54 PF08671 SinI: Anti-repressor 50.0 14 0.00031 24.0 2.0 20 200-219 9-28 (30)
55 cd01878 HflX HflX subfamily. 49.9 62 0.0013 27.7 6.6 61 12-74 119-186 (204)
56 cd04164 trmE TrmE (MnmE, ThdF, 49.6 71 0.0015 25.2 6.5 58 12-74 79-138 (157)
57 TIGR01919 hisA-trpF 1-(5-phosp 49.0 32 0.00069 31.9 4.9 69 14-83 121-209 (243)
58 cd04165 GTPBP1_like GTPBP1-lik 49.0 45 0.00098 30.2 5.9 38 13-53 109-151 (224)
59 TIGR00485 EF-Tu translation el 48.7 34 0.00074 33.4 5.4 41 12-53 97-141 (394)
60 COG3688 Predicted RNA-binding 48.7 14 0.0003 33.2 2.3 86 1-95 36-128 (173)
61 TIGR03637 cas1_YPEST CRISPR-as 47.8 37 0.00081 32.8 5.3 59 58-128 58-130 (307)
62 cd04166 CysN_ATPS CysN_ATPS su 47.6 39 0.00083 29.7 5.1 43 12-54 99-144 (208)
63 TIGR03156 GTP_HflX GTP-binding 47.1 39 0.00084 32.9 5.4 44 11-54 266-315 (351)
64 TIGR03449 mycothiol_MshA UDP-N 47.0 2E+02 0.0044 27.0 10.2 93 43-141 304-399 (405)
65 COG4566 TtrR Response regulato 46.9 2.1E+02 0.0045 26.5 9.7 102 65-214 74-175 (202)
66 PTZ00062 glutaredoxin; Provisi 46.4 1.5E+02 0.0033 27.0 8.8 83 3-96 7-92 (204)
67 PRK12297 obgE GTPase CgtA; Rev 45.5 25 0.00055 35.4 3.9 69 13-81 236-317 (424)
68 cd01895 EngA2 EngA2 subfamily. 45.3 76 0.0017 25.3 6.1 43 12-54 83-127 (174)
69 PLN03127 Elongation factor Tu; 45.3 44 0.00096 33.7 5.6 41 12-53 146-190 (447)
70 PRK09518 bifunctional cytidyla 45.2 45 0.00097 35.5 5.9 42 12-53 531-574 (712)
71 PRK12751 cpxP periplasmic stre 44.9 1E+02 0.0022 27.3 7.2 55 115-188 83-137 (162)
72 PRK09435 membrane ATPase/prote 44.7 1.2E+02 0.0025 29.7 8.3 68 14-83 170-252 (332)
73 cd03822 GT1_ecORF704_like This 44.7 92 0.002 27.8 7.1 94 43-141 269-365 (366)
74 COG1737 RpiR Transcriptional r 43.1 23 0.0005 33.1 3.1 57 171-229 6-74 (281)
75 cd02948 TRX_NDPK TRX domain, T 43.0 1.2E+02 0.0025 23.5 6.7 78 15-94 18-99 (102)
76 cd01879 FeoB Ferrous iron tran 42.9 47 0.001 26.5 4.5 41 13-53 74-114 (158)
77 PRK12736 elongation factor Tu; 41.7 50 0.0011 32.4 5.3 41 12-53 97-141 (394)
78 cd01887 IF2_eIF5B IF2/eIF5B (i 41.5 55 0.0012 26.5 4.8 40 13-53 73-115 (168)
79 cd01898 Obg Obg subfamily. Th 41.4 77 0.0017 25.7 5.7 42 13-54 78-128 (170)
80 cd04145 M_R_Ras_like M-Ras/R-R 41.2 41 0.00088 27.1 3.9 69 13-81 73-154 (164)
81 PRK06278 cobyrinic acid a,c-di 41.2 19 0.00041 36.9 2.3 57 15-71 351-414 (476)
82 PF10392 COG5: Golgi transport 41.1 2E+02 0.0044 23.9 8.2 64 83-153 6-77 (132)
83 cd07894 Adenylation_RNA_ligase 40.9 3.6E+02 0.0078 26.5 12.3 82 3-98 145-235 (342)
84 PRK02083 imidazole glycerol ph 40.6 1.3E+02 0.0027 27.5 7.5 110 4-139 112-246 (253)
85 PRK00049 elongation factor Tu; 39.7 60 0.0013 31.9 5.5 41 12-53 97-141 (396)
86 CHL00071 tufA elongation facto 39.5 59 0.0013 32.1 5.4 41 12-53 97-141 (409)
87 cd00881 GTP_translation_factor 39.5 58 0.0013 26.7 4.7 15 13-27 85-99 (189)
88 KOG0332 ATP-dependent RNA heli 39.1 1.5E+02 0.0033 30.3 8.2 86 14-111 354-456 (477)
89 PRK12735 elongation factor Tu; 38.8 64 0.0014 31.7 5.6 41 12-53 97-141 (396)
90 COG0486 ThdF Predicted GTPase 36.8 1.6E+02 0.0035 30.4 8.0 77 12-90 295-375 (454)
91 cd00154 Rab Rab family. Rab G 36.4 86 0.0019 24.4 5.0 41 13-53 72-118 (159)
92 PRK14114 1-(5-phosphoribosyl)- 36.4 58 0.0012 30.2 4.6 69 14-83 119-204 (241)
93 COG1162 Predicted GTPases [Gen 36.2 7.9 0.00017 37.5 -1.2 115 13-129 79-205 (301)
94 COG3276 SelB Selenocysteine-sp 36.2 26 0.00057 35.8 2.4 75 6-83 65-154 (447)
95 TIGR00157 ribosome small subun 36.0 25 0.00055 32.2 2.1 96 13-109 36-142 (245)
96 cd04136 Rap_like Rap-like subf 35.8 46 0.001 26.8 3.4 68 13-81 72-153 (163)
97 cd01889 SelB_euk SelB subfamil 35.6 92 0.002 26.6 5.4 40 13-53 91-133 (192)
98 KOG4603 TBP-1 interacting prot 35.5 1.6E+02 0.0034 27.0 6.9 98 66-189 60-157 (201)
99 PRK01889 GTPase RsgA; Reviewed 35.5 29 0.00064 33.8 2.6 73 12-85 111-191 (356)
100 PRK13586 1-(5-phosphoribosyl)- 35.0 88 0.0019 28.8 5.5 79 4-84 111-206 (232)
101 cd04142 RRP22 RRP22 subfamily. 34.5 60 0.0013 28.4 4.2 96 12-111 79-190 (198)
102 PRK10512 selenocysteinyl-tRNA- 34.2 75 0.0016 33.5 5.5 40 13-53 74-117 (614)
103 cd04167 Snu114p Snu114p subfam 34.1 87 0.0019 27.5 5.2 40 13-52 94-135 (213)
104 cd01882 BMS1 Bms1. Bms1 is an 34.0 70 0.0015 28.8 4.6 38 14-52 104-145 (225)
105 cd04139 RalA_RalB RalA/RalB su 34.0 56 0.0012 26.1 3.7 69 14-82 72-153 (164)
106 PLN02446 (5-phosphoribosyl)-5- 33.7 1.2E+02 0.0027 28.8 6.4 79 5-84 125-224 (262)
107 cd04153 Arl5_Arl8 Arl5/Arl8 su 33.1 91 0.002 26.1 4.9 41 13-53 82-129 (174)
108 cd05844 GT1_like_7 Glycosyltra 33.1 87 0.0019 28.6 5.2 80 56-139 283-366 (367)
109 cd01856 YlqF YlqF. Proteins o 33.0 43 0.00093 28.4 2.9 39 13-53 19-59 (171)
110 PRK14001 potassium-transportin 33.0 33 0.00073 31.2 2.3 26 198-223 141-166 (189)
111 PRK04293 adenylosuccinate synt 32.7 29 0.00063 34.2 2.0 41 41-81 273-328 (333)
112 cd02984 TRX_PICOT TRX domain, 32.6 1.5E+02 0.0033 22.0 5.6 89 4-94 4-96 (97)
113 PTZ00141 elongation factor 1- 32.5 84 0.0018 31.7 5.3 69 12-81 107-203 (446)
114 cd04160 Arfrp1 Arfrp1 subfamil 32.3 90 0.002 25.3 4.7 15 13-27 73-87 (167)
115 PRK13788 adenylosuccinate synt 32.2 23 0.00049 35.8 1.2 14 41-54 316-329 (404)
116 cd03807 GT1_WbnK_like This fam 32.0 3.5E+02 0.0075 23.7 8.9 79 56-140 281-363 (365)
117 PLN03126 Elongation factor Tu; 31.9 87 0.0019 32.0 5.4 42 12-54 166-211 (478)
118 PRK11302 DNA-binding transcrip 31.9 47 0.001 30.4 3.2 57 171-229 4-72 (284)
119 PF02669 KdpC: K+-transporting 31.9 37 0.00081 30.9 2.5 26 198-223 140-165 (188)
120 cd04732 HisA HisA. Phosphorib 31.8 1.5E+02 0.0034 26.2 6.4 69 5-74 112-197 (234)
121 cd01888 eIF2_gamma eIF2-gamma 31.5 98 0.0021 27.0 5.0 41 13-53 106-150 (203)
122 cd04159 Arl10_like Arl10-like 31.3 1.1E+02 0.0025 23.8 5.0 41 13-54 67-115 (159)
123 cd04108 Rab36_Rab34 Rab34/Rab3 31.3 99 0.0021 26.0 4.9 41 13-53 72-119 (170)
124 PRK00726 murG undecaprenyldiph 31.1 1.3E+02 0.0029 27.9 6.1 85 56-140 261-354 (357)
125 TIGR00475 selB selenocysteine- 31.0 88 0.0019 32.7 5.3 70 12-82 72-157 (581)
126 cd03801 GT1_YqgM_like This fam 30.8 3.3E+02 0.0071 23.5 8.2 92 44-141 278-373 (374)
127 TIGR00379 cobB cobyrinic acid 30.4 88 0.0019 31.4 5.1 39 15-53 111-153 (449)
128 PF00667 FAD_binding_1: FAD bi 30.1 1.8E+02 0.0039 26.0 6.6 134 13-156 43-177 (219)
129 PLN00043 elongation factor 1-a 30.0 87 0.0019 31.6 4.9 41 12-53 107-158 (447)
130 PRK14101 bifunctional glucokin 29.9 67 0.0015 33.6 4.3 91 137-229 293-412 (638)
131 TIGR01597 PYST-B Plasmodium yo 29.9 49 0.0011 31.4 2.9 75 125-227 52-129 (255)
132 cd04140 ARHI_like ARHI subfami 29.8 70 0.0015 26.3 3.6 42 13-54 72-122 (165)
133 cd04176 Rap2 Rap2 subgroup. T 29.7 74 0.0016 25.8 3.7 69 13-81 72-153 (163)
134 cd01853 Toc34_like Toc34-like 29.6 1.6E+02 0.0035 27.2 6.4 54 5-58 106-167 (249)
135 PRK00089 era GTPase Era; Revie 29.5 1.3E+02 0.0029 27.6 5.8 42 12-53 83-126 (292)
136 PRK00315 potassium-transportin 29.5 40 0.00086 30.9 2.2 26 198-223 141-166 (193)
137 TIGR00681 kdpC K+-transporting 29.3 42 0.0009 30.6 2.3 26 198-223 139-164 (187)
138 cd01890 LepA LepA subfamily. 29.3 1E+02 0.0022 25.4 4.5 40 13-53 90-132 (179)
139 PRK13997 potassium-transportin 29.1 40 0.00086 30.9 2.2 26 198-223 143-168 (193)
140 cd04171 SelB SelB subfamily. 29.0 1.5E+02 0.0032 23.7 5.3 41 13-53 74-117 (164)
141 PRK00741 prfC peptide chain re 28.9 2.3E+02 0.005 29.3 7.9 38 13-53 102-144 (526)
142 cd01894 EngA1 EngA1 subfamily. 28.8 1E+02 0.0023 24.3 4.4 42 13-54 76-119 (157)
143 cd06278 PBP1_LacI_like_2 Ligan 28.8 1.1E+02 0.0023 26.5 4.8 55 18-76 32-86 (266)
144 TIGR00484 EF-G translation elo 28.8 2.8E+02 0.0061 29.4 8.7 37 14-53 99-140 (689)
145 PRK14003 potassium-transportin 28.6 46 0.001 30.5 2.5 26 198-223 144-169 (194)
146 TIGR01007 eps_fam capsular exo 28.5 1E+02 0.0022 26.7 4.6 40 14-53 151-193 (204)
147 TIGR03594 GTPase_EngA ribosome 28.3 1.9E+02 0.0041 28.1 6.8 42 13-54 78-121 (429)
148 PF13500 AAA_26: AAA domain; P 28.2 1.1E+02 0.0023 26.6 4.6 39 15-53 130-171 (199)
149 cd01857 HSR1_MMR1 HSR1/MMR1. 28.1 88 0.0019 25.6 3.9 46 8-53 5-55 (141)
150 PRK13999 potassium-transportin 28.0 46 0.00099 30.7 2.3 26 198-223 150-175 (201)
151 cd04156 ARLTS1 ARLTS1 subfamil 27.8 1.3E+02 0.0028 24.1 4.9 41 13-53 67-114 (160)
152 TIGR03598 GTPase_YsxC ribosome 27.8 98 0.0021 26.1 4.3 39 14-53 101-142 (179)
153 cd01885 EF2 EF2 (for archaea a 27.7 98 0.0021 28.2 4.5 40 13-53 96-138 (222)
154 cd04118 Rab24 Rab24 subfamily. 27.7 61 0.0013 27.4 3.0 41 13-53 73-118 (193)
155 PRK01117 adenylosuccinate synt 27.4 43 0.00093 34.1 2.3 21 62-82 401-421 (430)
156 cd01866 Rab2 Rab2 subfamily. 27.3 1.1E+02 0.0024 25.2 4.5 67 13-80 76-155 (168)
157 PRK13995 potassium-transportin 27.2 48 0.001 30.6 2.4 26 198-223 151-176 (203)
158 PRK14002 potassium-transportin 27.1 48 0.001 30.2 2.3 26 198-223 137-162 (186)
159 COG0218 Predicted GTPase [Gene 27.0 95 0.0021 28.5 4.2 44 14-58 107-153 (200)
160 PRK14000 potassium-transportin 27.0 42 0.00092 30.5 1.9 26 198-223 140-165 (185)
161 PRK13996 potassium-transportin 26.9 49 0.0011 30.4 2.3 26 198-223 147-172 (197)
162 cd05027 S-100B S-100B: S-100B 26.7 1.2E+02 0.0027 23.6 4.3 42 99-140 31-80 (88)
163 PRK12289 GTPase RsgA; Reviewed 26.3 43 0.00093 32.9 2.0 119 11-132 87-216 (352)
164 cd04132 Rho4_like Rho4-like su 26.2 57 0.0012 27.3 2.5 40 13-53 72-118 (187)
165 cd01537 PBP1_Repressors_Sugar_ 26.2 2.9E+02 0.0063 23.3 7.0 58 18-78 32-90 (264)
166 TIGR01209 RNA ligase, Pab1020 26.0 79 0.0017 31.7 3.8 50 49-98 212-268 (374)
167 cd01852 AIG1 AIG1 (avrRpt2-ind 25.9 1.3E+02 0.0028 25.9 4.8 40 13-52 83-128 (196)
168 PRK10991 fucI L-fucose isomera 25.7 3.7E+02 0.0081 28.7 8.7 74 20-95 55-158 (588)
169 cd01917 ACS_2 Acetyl-CoA synth 25.6 94 0.002 30.2 4.1 61 66-143 37-99 (287)
170 cd01225 PH_Cool_Pix Cool (clon 25.5 51 0.0011 27.7 2.0 57 17-77 39-95 (111)
171 PRK04000 translation initiatio 25.2 1.3E+02 0.0028 29.8 5.2 41 13-54 108-153 (411)
172 TIGR02034 CysN sulfate adenyly 25.2 1E+02 0.0022 30.4 4.4 67 12-82 102-188 (406)
173 PF04122 CW_binding_2: Putativ 25.2 71 0.0015 24.5 2.7 47 28-74 11-57 (92)
174 cd05840 SPBC215_ISWI_like The 25.1 1.1E+02 0.0023 24.4 3.8 33 64-96 39-75 (93)
175 TIGR00491 aIF-2 translation in 24.9 1.4E+02 0.003 31.5 5.6 38 13-53 92-134 (590)
176 PRK13998 potassium-transportin 24.9 51 0.0011 30.0 2.1 25 198-222 139-163 (186)
177 PRK00093 GTP-binding protein D 24.8 1.8E+02 0.0038 28.5 6.0 39 12-53 254-297 (435)
178 PRK13787 adenylosuccinate synt 24.4 59 0.0013 33.1 2.6 14 41-54 323-336 (423)
179 cd04723 HisA_HisF Phosphoribos 24.3 1.1E+02 0.0025 27.7 4.3 75 7-83 118-205 (233)
180 PRK13994 potassium-transportin 24.3 53 0.0011 30.7 2.1 26 198-223 171-196 (222)
181 PRK15467 ethanolamine utilizat 24.1 83 0.0018 26.4 3.1 41 12-53 63-104 (158)
182 TIGR03594 GTPase_EngA ribosome 24.0 1.7E+02 0.0038 28.3 5.8 42 12-53 253-296 (429)
183 PRK13896 cobyrinic acid a,c-di 24.0 1E+02 0.0023 31.2 4.3 38 15-52 106-151 (433)
184 PF10376 Mei5: Double-strand r 23.9 1.3E+02 0.0029 27.8 4.6 39 99-138 171-212 (221)
185 PRK13877 conjugal transfer rel 23.7 1.3E+02 0.0027 25.2 4.0 30 204-233 84-113 (114)
186 PRK01033 imidazole glycerol ph 23.6 4E+02 0.0087 24.6 7.8 69 5-74 113-203 (258)
187 PRK10307 putative glycosyl tra 23.6 4.7E+02 0.01 24.9 8.5 73 64-141 328-405 (412)
188 cd01859 MJ1464 MJ1464. This f 23.6 1.2E+02 0.0026 25.0 3.9 40 14-53 13-54 (156)
189 PF13580 SIS_2: SIS domain; PD 23.5 2E+02 0.0043 23.8 5.3 36 12-48 101-137 (138)
190 PRK03003 GTP-binding protein D 23.5 1.9E+02 0.0042 29.0 6.1 42 12-53 292-335 (472)
191 PRK14098 glycogen synthase; Pr 23.3 6.7E+02 0.014 25.4 9.9 79 63-141 401-483 (489)
192 PF10662 PduV-EutP: Ethanolami 23.3 57 0.0012 28.3 2.0 69 11-82 61-137 (143)
193 PLN02949 transferase, transfer 23.2 7.8E+02 0.017 24.8 10.8 95 43-141 356-454 (463)
194 TIGR02528 EutP ethanolamine ut 23.1 78 0.0017 25.2 2.7 39 13-54 62-102 (142)
195 smart00788 Adenylsucc_synt Ade 23.0 59 0.0013 33.0 2.3 14 41-54 321-334 (421)
196 PRK04128 1-(5-phosphoribosyl)- 22.8 2.2E+02 0.0048 26.0 5.9 76 4-83 110-198 (228)
197 PTZ00327 eukaryotic translatio 22.8 1.5E+02 0.0033 30.2 5.2 41 12-53 139-184 (460)
198 cd03785 GT1_MurG MurG is an N- 22.7 1.9E+02 0.004 26.5 5.4 57 56-112 261-323 (350)
199 cd00876 Ras Ras family. The R 22.6 1.4E+02 0.0031 23.6 4.1 14 14-27 71-84 (160)
200 PF12167 DUF3596: Domain of un 22.5 1.8E+02 0.0038 21.6 4.3 49 67-133 10-59 (64)
201 KOG1143 Predicted translation 22.5 1.2E+02 0.0026 31.2 4.3 42 13-57 274-320 (591)
202 COG1160 Predicted GTPases [Gen 22.3 1.8E+02 0.0038 30.0 5.5 42 12-53 82-125 (444)
203 PF04675 DNA_ligase_A_N: DNA l 22.3 2.9E+02 0.0063 23.5 6.2 46 125-188 108-153 (177)
204 PF02601 Exonuc_VII_L: Exonucl 22.2 6.6E+02 0.014 23.6 11.0 90 12-110 38-155 (319)
205 TIGR02129 hisA_euk phosphoribo 22.1 1.7E+02 0.0036 27.8 5.0 79 4-84 117-218 (253)
206 cd00882 Ras_like_GTPase Ras-li 22.1 2.3E+02 0.005 21.1 5.0 46 13-58 68-120 (157)
207 COG0647 NagD Predicted sugar p 22.0 82 0.0018 30.0 2.9 52 40-100 13-67 (269)
208 cd00878 Arf_Arl Arf (ADP-ribos 21.9 2.1E+02 0.0044 23.0 5.0 15 13-27 66-80 (158)
209 cd01391 Periplasmic_Binding_Pr 21.9 1.7E+02 0.0037 24.3 4.7 59 18-79 35-94 (269)
210 PRK01077 cobyrinic acid a,c-di 21.7 83 0.0018 31.5 3.1 56 15-70 115-174 (451)
211 PF07217 Het-C: Heterokaryon i 21.7 2E+02 0.0043 30.7 5.8 13 237-249 397-409 (606)
212 cd01883 EF1_alpha Eukaryotic e 21.5 1.7E+02 0.0038 25.8 4.8 67 13-80 100-194 (219)
213 PF02375 JmjN: jmjN domain; I 21.5 36 0.00078 22.7 0.3 25 130-154 10-34 (34)
214 PRK14737 gmk guanylate kinase; 21.4 80 0.0017 27.8 2.6 59 82-141 122-182 (186)
215 cd04151 Arl1 Arl1 subfamily. 21.3 2.1E+02 0.0045 23.2 4.9 41 13-53 66-113 (158)
216 PRK00454 engB GTP-binding prot 21.2 1.7E+02 0.0036 24.5 4.5 38 15-53 108-148 (196)
217 PRK05124 cysN sulfate adenylyl 21.0 1.8E+02 0.004 29.5 5.4 70 12-83 129-217 (474)
218 PF08020 DUF1706: Protein of u 21.0 3.4E+02 0.0073 24.0 6.4 51 162-223 9-59 (166)
219 PF09592 DUF2031: Protein of u 20.9 75 0.0016 29.8 2.3 75 125-227 51-128 (228)
220 PF04695 Pex14_N: Peroxisomal 20.7 1.1E+02 0.0023 26.0 3.1 38 186-223 13-50 (136)
221 PRK13585 1-(5-phosphoribosyl)- 20.7 3.3E+02 0.0072 24.3 6.5 68 5-74 115-200 (241)
222 cd03108 AdSS Adenylosuccinate 20.5 69 0.0015 32.0 2.2 14 41-54 270-283 (363)
223 TIGR00436 era GTP-binding prot 20.3 1.6E+02 0.0035 27.0 4.5 41 13-53 79-120 (270)
No 1
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=100.00 E-value=1.6e-83 Score=625.12 Aligned_cols=231 Identities=52% Similarity=0.898 Sum_probs=223.1
Q ss_pred ChHHHHHHHHHhCCCeEEEEEeCcCcHHHHHHHHHhhhhcCCCeEEEecccCCCCCCccccceeccCCCeEEEecCCCCC
Q 022952 1 MMDELKDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGERME 80 (289)
Q Consensus 1 Lm~ELk~i~~~~~P~ev~LVldAttgqda~~~a~~F~~~v~i~gvIlTKlDetargG~aLS~~~~t~~PI~FIgtGQkVd 80 (289)
||+||++|+++++|+||+||+||++||||+++|++|+++++++|+|+||+|+|+|||+|||+++.|++||+||||||+++
T Consensus 200 Lm~El~~Ik~~~~P~E~llVvDam~GQdA~~~A~aF~e~l~itGvIlTKlDGdaRGGaALS~~~~tg~PIkFiGtGEki~ 279 (451)
T COG0541 200 LMDELKEIKEVINPDETLLVVDAMIGQDAVNTAKAFNEALGITGVILTKLDGDARGGAALSARAITGKPIKFIGTGEKID 279 (451)
T ss_pred HHHHHHHHHhhcCCCeEEEEEecccchHHHHHHHHHhhhcCCceEEEEcccCCCcchHHHhhHHHHCCCeEEEecCCCcc
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCChhHHHHHhhCCCchhHHHHHHHHhccHHHHHHHHHHHHhCCcChHHHHHHHHHHHhcCchHHHHhcCCCCC-CC
Q 022952 81 DLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQKKIMSANFDFNDFLKQTRTVARMGSMSRVIGMIPGMG-KI 159 (289)
Q Consensus 81 DLe~f~p~~la~rlLG~gDi~sLvEk~~~~~~~~~~~~~~~k~~~g~F~l~Df~~Q~~~i~kmG~l~~i~~miPG~~-~~ 159 (289)
|||+|||+|||+||||||||.||+||+++++++++++++++|+++|+|||+|||+|+++|+||||+++|++||||++ ..
T Consensus 280 dLE~F~P~R~asRILGMGDv~sLvEk~~~~~d~e~a~~~~~kl~~g~FtL~Df~~Ql~~m~kmGpl~~ll~miPG~~~~~ 359 (451)
T COG0541 280 DLEPFHPDRFASRILGMGDVLSLIEKAEEVVDEEEAEKLAEKLKKGKFTLEDFLEQLEQMKKMGPLSKLLSMIPGMGMKD 359 (451)
T ss_pred cCCCcChHHHHHHhcCcccHHHHHHHHHHhhhHHHHHHHHHHHHhCCCCHHHHHHHHHHHHccCCHHHHHHhCCCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998 33
Q ss_pred CchhhHHhHHHHHHHHHHHhCCCHHhhcCccccCCCchhhHHhhccCCCCHHHHHHHHHHHHHHHHHHHHHhcc
Q 022952 160 TPAQVREAEKSLKIMEAMIEAMTPEEREKPELLAESPVRRKRVAQDSGKTEQQVSQLVAQLFQMRVRMKNLMGV 233 (289)
Q Consensus 160 ~~~~~~~~e~~~k~~~~Ii~SMT~~Er~nP~li~~~~SR~~RIA~GSG~~~~eVn~Llk~f~~m~kmmk~~~~~ 233 (289)
+.++.+.+|+++++|++||+|||++||+||+||+ +||++|||+||||+++|||+||+||++|++|||+|.++
T Consensus 360 ~~~~~~~~e~~~kr~~aIi~SMT~~Er~nP~ii~--~SR~rRIA~GSG~sv~dVn~Llkq~~~m~~mmk~m~~~ 431 (451)
T COG0541 360 SDKDIELDEKKLKRIEAIIDSMTPEERENPDIIN--ASRKRRIARGSGTSVQDVNKLLKQFKQMKKMMKKMSGG 431 (451)
T ss_pred chhhhhccHHHHHHHHHHHHcCCHHHhhCccccC--hHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 3445667799999999999999999999999996 69999999999999999999999999999999999864
No 2
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=4.1e-79 Score=587.24 Aligned_cols=283 Identities=37% Similarity=0.628 Sum_probs=270.5
Q ss_pred ChHHHHHHHHHhCCCeEEEEEeCcCcHHHHHHHHHhhhhcCCCeEEEecccCCCCCCccccceeccCCCeEEEecCCCCC
Q 022952 1 MMDELKDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGERME 80 (289)
Q Consensus 1 Lm~ELk~i~~~~~P~ev~LVldAttgqda~~~a~~F~~~v~i~gvIlTKlDetargG~aLS~~~~t~~PI~FIgtGQkVd 80 (289)
||+||.++.++++|++|+||+||++||.|.+||++|++.++++++|+||+|+|++||||||++++|++||.||||||++|
T Consensus 201 LfeEM~~v~~ai~Pd~vi~VmDasiGQaae~Qa~aFk~~vdvg~vIlTKlDGhakGGgAlSaVaaTksPIiFIGtGEhmd 280 (483)
T KOG0780|consen 201 LFEEMKQVSKAIKPDEIIFVMDASIGQAAEAQARAFKETVDVGAVILTKLDGHAKGGGALSAVAATKSPIIFIGTGEHMD 280 (483)
T ss_pred HHHHHHHHHhhcCCCeEEEEEeccccHhHHHHHHHHHHhhccceEEEEecccCCCCCceeeehhhhCCCEEEEecCcccc
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCChhHHHHHhhCCCchhHHHHHHHHhccHHHHHHHHHHHHhCCcChHHHHHHHHHHHhcCchHHHHhcCCCCCCCC
Q 022952 81 DLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQKKIMSANFDFNDFLKQTRTVARMGSMSRVIGMIPGMGKIT 160 (289)
Q Consensus 81 DLe~f~p~~la~rlLG~gDi~sLvEk~~~~~~~~~~~~~~~k~~~g~F~l~Df~~Q~~~i~kmG~l~~i~~miPG~~~~~ 160 (289)
|||+|+|++||++|||||||.+||||++++. .++++++.++|.+|+|||+|||+|++.|.||||++++++|||||+.++
T Consensus 281 DlE~F~pk~FvsrlLGmGDi~glvek~~ev~-~~d~~el~~kl~~gkFtlrd~y~Qfq~imkmGp~s~v~~MiPG~s~m~ 359 (483)
T KOG0780|consen 281 DLEPFDPKPFVSRLLGMGDIEGLVEKVQEVG-KDDAKELVEKLKQGKFTLRDFYDQFQNIMKMGPLSQVLGMIPGMSMMS 359 (483)
T ss_pred ccCCCChHHHHHHHhccccHHHHHHHHHHHh-hhhHHHHHHHHHhCCccHHHHHHHHHHHHhhCCHHHHHhhCCCcccCC
Confidence 9999999999999999999999999999998 788999999999999999999999999999999999999999999888
Q ss_pred chhhHHhHHHHHHHHHHHhCCCHHhhcCccccCCCchhhHHhhccCCCCHHHHHHHHHHHHHHHHHHHHHhcccCCCCCC
Q 022952 161 PAQVREAEKSLKIMEAMIEAMTPEEREKPELLAESPVRRKRVAQDSGKTEQQVSQLVAQLFQMRVRMKNLMGVMEGGSLP 240 (289)
Q Consensus 161 ~~~~~~~e~~~k~~~~Ii~SMT~~Er~nP~li~~~~SR~~RIA~GSG~~~~eVn~Llk~f~~m~kmmk~~~~~~~~~~~~ 240 (289)
+.+.++.+.+++++.+||||||++||++|+++..+|||+.|||||||++++||.+||.||++++++|++++ ..+|.++
T Consensus 360 ~~~e~Es~~~~krm~~mmDsMt~~Elds~~~f~~~p~R~~RvArgSG~~v~eV~ell~q~~~~~~~~kk~~--~~~G~~~ 437 (483)
T KOG0780|consen 360 KGNEEESSAKLKRMMTMMDSMTDEELDSPELFVEEPSRIMRVARGSGTSVQEVMELLAQYKKFAAMMKKIG--GIKGIFG 437 (483)
T ss_pred CcchhHHHHHHHHHHHHHHhcChhhccCccccccCchHhhhhhccCCccHHHHHHHHHHHHHHHHHHHHhc--CCCCccc
Confidence 88888889999999999999999999999999889999999999999999999999999999999999998 4567777
Q ss_pred chhhHHHHhhcccCCCCchhhhhhhhhhhhhccCCCCCCCCCCCCCCCC
Q 022952 241 ALSNLEDALKSEQKAPPGTARRKRRSESRRQFVDPASTRPSPRGFGGGS 289 (289)
Q Consensus 241 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (289)
.| +.++ +..+.+||++.+++...-..+++...++.++-+|+||+++
T Consensus 438 ~l-g~~~--~~~~~~~~~~l~q~~~~~~~~~~~~~mg~k~mm~~fg~g~ 483 (483)
T KOG0780|consen 438 AL-GNPN--KNMNPAPMAKLKQQMAKMGPQRLLQQMGSKNMMRMFGGGN 483 (483)
T ss_pred cc-CCcc--cccCcCChHHHHHHHHhcccHHHHHHhccchhhHhhcCCC
Confidence 77 4444 6789999999999988889999999999999999999874
No 3
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=100.00 E-value=1.2e-73 Score=560.84 Aligned_cols=242 Identities=38% Similarity=0.680 Sum_probs=225.8
Q ss_pred ChHHHHHHHHHhCCCeEEEEEeCcCcHHHHHHHHHhhhhcCCCeEEEecccCCCCCCccccceeccCCCeEEEecCCCCC
Q 022952 1 MMDELKDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGERME 80 (289)
Q Consensus 1 Lm~ELk~i~~~~~P~ev~LVldAttgqda~~~a~~F~~~v~i~gvIlTKlDetargG~aLS~~~~t~~PI~FIgtGQkVd 80 (289)
+|+||+.+.+.+.|++++||+||++||+++++++.|++.++++|+|+||+|+|++||+|||+++.+++||+||||||+||
T Consensus 193 lm~El~~l~~~~~pdevlLVvda~~gq~av~~a~~F~~~l~i~gvIlTKlD~~a~~G~~ls~~~~~~~Pi~fig~Ge~v~ 272 (437)
T PRK00771 193 LIEEMKEIKEAVKPDEVLLVIDATIGQQAKNQAKAFHEAVGIGGIIITKLDGTAKGGGALSAVAETGAPIKFIGTGEKID 272 (437)
T ss_pred HHHHHHHHHHHhcccceeEEEeccccHHHHHHHHHHHhcCCCCEEEEecccCCCcccHHHHHHHHHCcCEEEEecCCCcc
Confidence 58999999999999999999999999999999999999899999999999999999999999999999999999999999
Q ss_pred CCCCCChhHHHHHhhCCCchhHHHHHHHHhccHHHHHHHHHHHHhCCcChHHHHHHHHHHHhcCchHHHHhcCCCCCC-C
Q 022952 81 DLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQKKIMSANFDFNDFLKQTRTVARMGSMSRVIGMIPGMGK-I 159 (289)
Q Consensus 81 DLe~f~p~~la~rlLG~gDi~sLvEk~~~~~~~~~~~~~~~k~~~g~F~l~Df~~Q~~~i~kmG~l~~i~~miPG~~~-~ 159 (289)
||++|+|++||++||||||+.+|+||+++.+++++++++.+|+.+|+|||+|||+|+++|+||||+++|++||||+++ +
T Consensus 273 Dle~f~~~~~~~~ilgmgd~~~l~e~~~~~~~~~~~~~~~~~~~~~~f~l~d~~~q~~~~~kmG~~~~~~~m~pg~~~~~ 352 (437)
T PRK00771 273 DLERFDPDRFISRLLGMGDLESLLEKVEEALDEEEEEKDVEKMMKGKFTLKDMYKQLEAMNKMGPLKQILQMLPGLGGKL 352 (437)
T ss_pred cCCcCCHHHHHHHHhCCCChHHHHHHHHHhhhHHHHHHHHHHHHcCCcCHHHHHHHHHHHHhcCCHHHHHHhCcCccccc
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999984 5
Q ss_pred CchhhHHhHHHHHHHHHHHhCCCHHhhcCccccCCCchhhHHhhccCCCCHHHHHHHHHHHHHHHHHHHHHhcccCCCCC
Q 022952 160 TPAQVREAEKSLKIMEAMIEAMTPEEREKPELLAESPVRRKRVAQDSGKTEQQVSQLVAQLFQMRVRMKNLMGVMEGGSL 239 (289)
Q Consensus 160 ~~~~~~~~e~~~k~~~~Ii~SMT~~Er~nP~li~~~~SR~~RIA~GSG~~~~eVn~Llk~f~~m~kmmk~~~~~~~~~~~ 239 (289)
++.+.+.+++++++|++||+|||++||+||++|+ +||++|||+||||+++|||+||++|++|++||++|.+. .
T Consensus 353 ~~~~~~~~~~~~~~~~~ii~SMt~~Er~~p~~~~--~sR~~Ria~GsG~~~~~v~~ll~~~~~~~~~~~~~~~~-----~ 425 (437)
T PRK00771 353 PDEALEVTEEKLKKYKAIMDSMTEEELENPEIIN--ASRIRRIARGSGTTVEDVRELLKYYKMMKKAMKQLKKG-----K 425 (437)
T ss_pred hhhhhcccHHHHHHHHHHHHcCCHHHHhCccccc--HHHHHHHHccCCCCHHHHHHHHHHHHHHHHHHHHhcCC-----C
Confidence 4433345788999999999999999999999995 59999999999999999999999999999999988642 3
Q ss_pred CchhhHHHHh
Q 022952 240 PALSNLEDAL 249 (289)
Q Consensus 240 ~~~~~~~~~~ 249 (289)
|.+..|+..+
T Consensus 426 ~~~~~~~~~~ 435 (437)
T PRK00771 426 GKMGKLMKQF 435 (437)
T ss_pred chHHHHHHhc
Confidence 5566666543
No 4
>PRK10867 signal recognition particle protein; Provisional
Probab=100.00 E-value=1.9e-72 Score=551.74 Aligned_cols=227 Identities=54% Similarity=0.923 Sum_probs=218.7
Q ss_pred ChHHHHHHHHHhCCCeEEEEEeCcCcHHHHHHHHHhhhhcCCCeEEEecccCCCCCCccccceeccCCCeEEEecCCCCC
Q 022952 1 MMDELKDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGERME 80 (289)
Q Consensus 1 Lm~ELk~i~~~~~P~ev~LVldAttgqda~~~a~~F~~~v~i~gvIlTKlDetargG~aLS~~~~t~~PI~FIgtGQkVd 80 (289)
+|+||..+.+.++|++++||+||++||+++++++.|++.++++|+|+||+|+|+++|+|||+++.+++||+|+|+||+|+
T Consensus 201 lm~eL~~i~~~v~p~evllVlda~~gq~av~~a~~F~~~~~i~giIlTKlD~~~rgG~alsi~~~~~~PI~fig~Ge~v~ 280 (433)
T PRK10867 201 LMDELKAIKAAVNPDEILLVVDAMTGQDAVNTAKAFNEALGLTGVILTKLDGDARGGAALSIRAVTGKPIKFIGTGEKLD 280 (433)
T ss_pred HHHHHHHHHHhhCCCeEEEEEecccHHHHHHHHHHHHhhCCCCEEEEeCccCcccccHHHHHHHHHCcCEEEEeCCCccc
Confidence 58899999999999999999999999999999999999899999999999999999999999999999999999999999
Q ss_pred CCCCCChhHHHHHhhCCCchhHHHHHHHHhccHHHHHHHHHHHHhCCcChHHHHHHHHHHHhcCchHHHHhcCCCCCCCC
Q 022952 81 DLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQKKIMSANFDFNDFLKQTRTVARMGSMSRVIGMIPGMGKIT 160 (289)
Q Consensus 81 DLe~f~p~~la~rlLG~gDi~sLvEk~~~~~~~~~~~~~~~k~~~g~F~l~Df~~Q~~~i~kmG~l~~i~~miPG~~~~~ 160 (289)
||++|+|++|+++||||||+++|+||+++++++++++++++|+++|+|||+||++|+++|+||||+++|++||||+++++
T Consensus 281 DLe~f~p~~~~~~ilgmgD~~~l~e~~~~~~~~~~~~~~~~~~~~g~f~l~d~~~q~~~~~kmG~~~~~~~m~Pg~~~~~ 360 (433)
T PRK10867 281 DLEPFHPDRMASRILGMGDVLSLIEKAQEVVDEEKAEKLAKKLKKGKFDLEDFLEQLQQMKKMGGLGSLLGMLPGMGNMK 360 (433)
T ss_pred cCccCCHHHHHHHHhCCCChHHHHHHHHHhhCHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHhCCCccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998764
Q ss_pred chhhHHhHHHHHHHHHHHhCCCHHhhcCccccCCCchhhHHhhccCCCCHHHHHHHHHHHHHHHHHHHHHhc
Q 022952 161 PAQVREAEKSLKIMEAMIEAMTPEEREKPELLAESPVRRKRVAQDSGKTEQQVSQLVAQLFQMRVRMKNLMG 232 (289)
Q Consensus 161 ~~~~~~~e~~~k~~~~Ii~SMT~~Er~nP~li~~~~SR~~RIA~GSG~~~~eVn~Llk~f~~m~kmmk~~~~ 232 (289)
+ +.+++++++|++||+|||++||+||+||+ +||++|||+|||++++|||+||++|++|++||++|.+
T Consensus 361 ~---~~~~~~~~~~~~ii~SMt~~Er~~p~~~~--~sR~~RIa~GsG~~~~~v~~ll~~~~~~~~~~~~~~~ 427 (433)
T PRK10867 361 A---QLDDKELKRIEAIINSMTPKERANPDILN--GSRKRRIAKGSGTTVQEVNRLLKQFEQMKKMMKKMKG 427 (433)
T ss_pred c---cccHHHHHHHHHHHHcCCHHHHhCccccc--hHHHHHHHccCCCCHHHHHHHHHHHHHHHHHHHHhcC
Confidence 3 24568999999999999999999999996 5999999999999999999999999999999999875
No 5
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=100.00 E-value=3.5e-72 Score=549.05 Aligned_cols=226 Identities=27% Similarity=0.565 Sum_probs=213.1
Q ss_pred ChHHHHHHHHHhCCCeEEEEEeCcCcHHHHHHHHHhhhhcCCCeEEEecccCCCCCCccccceeccCCCeEEEecCCCCC
Q 022952 1 MMDELKDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGERME 80 (289)
Q Consensus 1 Lm~ELk~i~~~~~P~ev~LVldAttgqda~~~a~~F~~~v~i~gvIlTKlDetargG~aLS~~~~t~~PI~FIgtGQkVd 80 (289)
||+||.++.++++|++++||+||++||++.+++++|++.++++|+|+||+|||++||++||+++.+++||+|||+||+|+
T Consensus 200 lm~El~~i~~~~~p~e~lLVlda~~Gq~a~~~a~~F~~~~~~~g~IlTKlD~~argG~aLs~~~~t~~PI~fig~Ge~v~ 279 (429)
T TIGR01425 200 LFEEMLQVAEAIQPDNIIFVMDGSIGQAAEAQAKAFKDSVDVGSVIITKLDGHAKGGGALSAVAATKSPIIFIGTGEHID 279 (429)
T ss_pred HHHHHHHHhhhcCCcEEEEEeccccChhHHHHHHHHHhccCCcEEEEECccCCCCccHHhhhHHHHCCCeEEEcCCCChh
Confidence 58999999999999999999999999999999999999899999999999999999999999999999999999999999
Q ss_pred CCCCCChhHHHHHhhCCCchhHHHHHHHHhccHHHHHHHHHHHHhCCcChHHHHHHHHHHHhcCchHHHHhcCCCCCC-C
Q 022952 81 DLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQKKIMSANFDFNDFLKQTRTVARMGSMSRVIGMIPGMGK-I 159 (289)
Q Consensus 81 DLe~f~p~~la~rlLG~gDi~sLvEk~~~~~~~~~~~~~~~k~~~g~F~l~Df~~Q~~~i~kmG~l~~i~~miPG~~~-~ 159 (289)
||++|+|++++++||||||+.+|+||+++++++++++++.+|+++|+|||+|||+|+++|+||||+++|++||||+++ +
T Consensus 280 Dle~f~p~~~~~rilgmgDi~~L~ek~~~~~~~~~~~~~~~k~~~~~f~l~D~~~q~~~i~kmG~~~~i~~m~Pg~~~~~ 359 (429)
T TIGR01425 280 DFEIFKTQPFISKLLGMGDIEGLIDKVQDLKLDDNEKALIEKLKEGTFTLRDMYEQFQNLLKMGPLGQILSMIPGFSTDF 359 (429)
T ss_pred hcCcCChHHHHHHHhcCCCcHHHHHHHHHhhhHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCHHHHHHhCcCcchhh
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999984 4
Q ss_pred Cch-hhHHhHHHHHHHHHHHhCCCHHhhcC--ccccCCCchhhHHhhccCCCCHHHHHHHHHHHHHHHHH
Q 022952 160 TPA-QVREAEKSLKIMEAMIEAMTPEEREK--PELLAESPVRRKRVAQDSGKTEQQVSQLVAQLFQMRVR 226 (289)
Q Consensus 160 ~~~-~~~~~e~~~k~~~~Ii~SMT~~Er~n--P~li~~~~SR~~RIA~GSG~~~~eVn~Llk~f~~m~km 226 (289)
... +.+.+++++++|++||+|||++||+| |+||+.++||++|||+||||+++|||+||+||++|++|
T Consensus 360 ~~~~~~~~~~~~~~~~~aii~SMT~~Er~~~~p~i~~~~~sR~~RIa~GSG~~~~~V~~ll~~~~~~~~~ 429 (429)
T TIGR01425 360 MSKGNEEESMAKIKKLMTIMDSMTDQELDSTDGKVFSKQPSRIQRVARGSGRSIRDVQELLEQYKKFAQM 429 (429)
T ss_pred hhhhcccccHHHHHhHHHHHhcCCHHHHccCCCccccCCccHHHHHHccCCCCHHHHHHHHHHHHHHhcC
Confidence 221 22357789999999999999999998 99994346999999999999999999999999999654
No 6
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=100.00 E-value=1.1e-70 Score=538.60 Aligned_cols=227 Identities=55% Similarity=0.930 Sum_probs=215.6
Q ss_pred ChHHHHHHHHHhCCCeEEEEEeCcCcHHHHHHHHHhhhhcCCCeEEEecccCCCCCCccccceeccCCCeEEEecCCCCC
Q 022952 1 MMDELKDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGERME 80 (289)
Q Consensus 1 Lm~ELk~i~~~~~P~ev~LVldAttgqda~~~a~~F~~~v~i~gvIlTKlDetargG~aLS~~~~t~~PI~FIgtGQkVd 80 (289)
+|+||.++.++++|++++||+||++||++.++|+.|+..++++|+|+||+|+|+++|+++|+++.+++||+|+|+||+++
T Consensus 200 l~~eL~~i~~~~~p~e~lLVvda~tgq~~~~~a~~f~~~v~i~giIlTKlD~~~~~G~~lsi~~~~~~PI~fi~~Ge~i~ 279 (428)
T TIGR00959 200 LMEELAAIKEILNPDEILLVVDAMTGQDAVNTAKTFNERLGLTGVVLTKLDGDARGGAALSVRSVTGKPIKFIGVGEKID 279 (428)
T ss_pred HHHHHHHHHHhhCCceEEEEEeccchHHHHHHHHHHHhhCCCCEEEEeCccCcccccHHHHHHHHHCcCEEEEeCCCChh
Confidence 57899999999999999999999999999999999998899999999999999999999999999999999999999999
Q ss_pred CCCCCChhHHHHHhhCCCchhHHHHHHHHhccHHHHHHHHHHHHhCCcChHHHHHHHHHHHhcCchHHHHhcCCCCCCCC
Q 022952 81 DLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQKKIMSANFDFNDFLKQTRTVARMGSMSRVIGMIPGMGKIT 160 (289)
Q Consensus 81 DLe~f~p~~la~rlLG~gDi~sLvEk~~~~~~~~~~~~~~~k~~~g~F~l~Df~~Q~~~i~kmG~l~~i~~miPG~~~~~ 160 (289)
||++|+|++|+++||||||+++|+|++++++++++++++++++++|+|||+|||+|+++|+||||+++|++||||++++.
T Consensus 280 dl~~f~p~~~~~~iLg~gD~~~l~e~~~~~~~~~~~~~~~~~~~~~~f~l~d~~~q~~~~~kmG~~~~~~~~~Pg~~~~~ 359 (428)
T TIGR00959 280 DLEPFHPERMASRILGMGDILSLVEKAQEVVDEEEAKKLAEKMKKGQFDLEDFLEQLRQIKKMGPLSSLLKMIPGMGGVK 359 (428)
T ss_pred hCccCCHHHHHHHHhCCCChHHHHHHHHHhhCHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHhCcCccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998653
Q ss_pred ch--hhHHhHHHHHHHHHHHhCCCHHhhcCccccCCCchhhHHhhccCCCCHHHHHHHHHHHHHHHHHHHH
Q 022952 161 PA--QVREAEKSLKIMEAMIEAMTPEEREKPELLAESPVRRKRVAQDSGKTEQQVSQLVAQLFQMRVRMKN 229 (289)
Q Consensus 161 ~~--~~~~~e~~~k~~~~Ii~SMT~~Er~nP~li~~~~SR~~RIA~GSG~~~~eVn~Llk~f~~m~kmmk~ 229 (289)
.. ..+.+++++++|++||+|||++||+||++|+ +||++|||+|||++++|||+||++|++|++||++
T Consensus 360 ~~~~~~~~~~~~~~~~~~ii~SMt~~Er~~p~~~~--~sR~~RIa~GsG~~~~~v~~ll~~~~~~~~~~~~ 428 (428)
T TIGR00959 360 PSLSDLELDEKQFKRIEAIISSMTPEERRNPKILN--PSRRKRIAAGSGTTVQDVNKLIKRFEQMKKMMKK 428 (428)
T ss_pred cccccccccHHHHHHHHHHHHcCCHHHHhCccccc--HHHHHHHHccCCCCHHHHHHHHHHHHHHHHHhcc
Confidence 21 1234678999999999999999999999996 6999999999999999999999999999988863
No 7
>PF02978 SRP_SPB: Signal peptide binding domain; InterPro: IPR004125 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the M domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0008312 7S RNA binding, 0006614 SRP-dependent cotranslational protein targeting to membrane, 0048500 signal recognition particle; PDB: 2FFH_B 3NDB_B 2V3C_C 1QZW_G 1QZX_B 3KL4_A 2JQE_A 1HQ1_A 1RY1_W 1MFQ_C ....
Probab=100.00 E-value=2.7e-37 Score=251.28 Aligned_cols=99 Identities=46% Similarity=0.805 Sum_probs=90.1
Q ss_pred CcChHHHHHHHHHHHhcCchHHHHhcCCCCCCC----Cc-hhhHHhHHHHHHHHHHHhCCCHHhhcCccccCCCchhhHH
Q 022952 127 NFDFNDFLKQTRTVARMGSMSRVIGMIPGMGKI----TP-AQVREAEKSLKIMEAMIEAMTPEEREKPELLAESPVRRKR 201 (289)
Q Consensus 127 ~F~l~Df~~Q~~~i~kmG~l~~i~~miPG~~~~----~~-~~~~~~e~~~k~~~~Ii~SMT~~Er~nP~li~~~~SR~~R 201 (289)
+|||+|||+|++++.||||+++|++||||++++ +. ...+.+++++++|++||+|||++||+||++|+ .||++|
T Consensus 1 ~F~l~Df~~Q~~~i~kmG~l~~i~~miPG~~~~~~~~~~~~~~~~~~~~lk~~~~Ii~SMT~~Er~~p~ll~--~sR~~R 78 (104)
T PF02978_consen 1 KFTLRDFLEQLQQIKKMGPLSKIMSMIPGMGNMMESLPSEQEEEEDEKKLKRMEAIIDSMTPEERDNPKLLN--ESRRRR 78 (104)
T ss_dssp SSCHHHHHHHHHHHHHTSTTHHHHTTSSSSSSS-SSTTCSSSSHHHHHHHHHHHHHHTTSBHHHHHCGGGHH--HHHHHH
T ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHCcCccccccccchhcchhhhHHHHHHHHHHHHCcCHHHHhCccccc--hHHHHH
Confidence 699999999999999999999999999999876 32 23456788999999999999999999999996 499999
Q ss_pred hhccCCCCHHHHHHHHHHHHHHHHHH
Q 022952 202 VAQDSGKTEQQVSQLVAQLFQMRVRM 227 (289)
Q Consensus 202 IA~GSG~~~~eVn~Llk~f~~m~kmm 227 (289)
||+|||++++|||+||++|++|++||
T Consensus 79 IA~GSG~~~~eV~~ll~~f~~~~~mm 104 (104)
T PF02978_consen 79 IARGSGTTVQEVNELLKQFKQMKKMM 104 (104)
T ss_dssp HHHHTTS-HHHHHHHHHHHHHHHHHH
T ss_pred HHHHcCCCHHHHHHHHHHHHHHHhhC
Confidence 99999999999999999999998876
No 8
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=99.94 E-value=7.5e-27 Score=222.52 Aligned_cols=96 Identities=48% Similarity=0.811 Sum_probs=93.1
Q ss_pred ChHHHHHHHHHhC------CCeEEEEEeCcCcHHHHHHHHHhhhhcCCCeEEEecccCCCCCCccccceeccCCCeEEEe
Q 022952 1 MMDELKDVKRVLN------PTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAALSVKEVSGKPIKLVG 74 (289)
Q Consensus 1 Lm~ELk~i~~~~~------P~ev~LVldAttgqda~~~a~~F~~~v~i~gvIlTKlDetargG~aLS~~~~t~~PI~FIg 74 (289)
||+||++|.++++ |+|++||+||++||++++||+.|++++++||+|+||+|+|++||.+||+++++++||.|||
T Consensus 239 LM~EL~KI~rV~~k~~~~ap~e~llvlDAttGqnal~QAk~F~eav~l~GiIlTKlDgtAKGG~il~I~~~l~~PI~fiG 318 (340)
T COG0552 239 LMDELKKIVRVIKKDDPDAPHEILLVLDATTGQNALSQAKIFNEAVGLDGIILTKLDGTAKGGIILSIAYELGIPIKFIG 318 (340)
T ss_pred HHHHHHHHHHHhccccCCCCceEEEEEEcccChhHHHHHHHHHHhcCCceEEEEecccCCCcceeeeHHHHhCCCEEEEe
Confidence 7999999999987 5779999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCCCCChhHHHHHhhC
Q 022952 75 RGERMEDLEPFYPDRMAGRILG 96 (289)
Q Consensus 75 tGQkVdDLe~f~p~~la~rlLG 96 (289)
.||+++||.+|+|++|++.|++
T Consensus 319 vGE~~~DL~~Fd~~~fv~~L~~ 340 (340)
T COG0552 319 VGEGYDDLRPFDAEWFVDALLG 340 (340)
T ss_pred CCCChhhccccCHHHHHHHhhC
Confidence 9999999999999999999985
No 9
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=99.92 E-value=2.4e-25 Score=197.79 Aligned_cols=96 Identities=47% Similarity=0.715 Sum_probs=92.2
Q ss_pred ChHHHHHHHHHhCCCeEEEEEeCcCcHHHHHHHHHhhhhcCCCeEEEecccCCCCCCccccceeccCCCeEEEecCCCCC
Q 022952 1 MMDELKDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGERME 80 (289)
Q Consensus 1 Lm~ELk~i~~~~~P~ev~LVldAttgqda~~~a~~F~~~v~i~gvIlTKlDetargG~aLS~~~~t~~PI~FIgtGQkVd 80 (289)
+++||+++.+...|+++|||+||+++++..+++..|.+.++++++|+||+|||.++|++||+.+.+++||+|+|+||+|+
T Consensus 101 ~~~el~~~~~~~~~~~~~LVlsa~~~~~~~~~~~~~~~~~~~~~lIlTKlDet~~~G~~l~~~~~~~~Pi~~it~Gq~V~ 180 (196)
T PF00448_consen 101 LLEELKKLLEALNPDEVHLVLSATMGQEDLEQALAFYEAFGIDGLILTKLDETARLGALLSLAYESGLPISYITTGQRVD 180 (196)
T ss_dssp HHHHHHHHHHHHSSSEEEEEEEGGGGGHHHHHHHHHHHHSSTCEEEEESTTSSSTTHHHHHHHHHHTSEEEEEESSSSTT
T ss_pred HHHHHHHHhhhcCCccceEEEecccChHHHHHHHHHhhcccCceEEEEeecCCCCcccceeHHHHhCCCeEEEECCCChh
Confidence 37899999999999999999999999998889999999899999999999999999999999999999999999999999
Q ss_pred CCCCCChhHHHHHhhC
Q 022952 81 DLEPFYPDRMAGRILG 96 (289)
Q Consensus 81 DLe~f~p~~la~rlLG 96 (289)
||++|+|++|+++|||
T Consensus 181 Dl~~~~~~~l~~~llg 196 (196)
T PF00448_consen 181 DLEPASPERLASRLLG 196 (196)
T ss_dssp GEEE-THHHHHHHHHT
T ss_pred cCccCCHHHHHHHhcC
Confidence 9999999999999997
No 10
>PRK14974 cell division protein FtsY; Provisional
Probab=99.91 E-value=1.1e-24 Score=208.52 Aligned_cols=97 Identities=47% Similarity=0.796 Sum_probs=94.5
Q ss_pred ChHHHHHHHHHhCCCeEEEEEeCcCcHHHHHHHHHhhhhcCCCeEEEecccCCCCCCccccceeccCCCeEEEecCCCCC
Q 022952 1 MMDELKDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGERME 80 (289)
Q Consensus 1 Lm~ELk~i~~~~~P~ev~LVldAttgqda~~~a~~F~~~v~i~gvIlTKlDetargG~aLS~~~~t~~PI~FIgtGQkVd 80 (289)
+|+||+.+.+.++|++++||+||++|+++.++++.|++.++++|+|+||+|+|+++|++||+.+.+++||.|+|+||+|+
T Consensus 240 lm~eL~~i~~~~~pd~~iLVl~a~~g~d~~~~a~~f~~~~~~~giIlTKlD~~~~~G~~ls~~~~~~~Pi~~i~~Gq~v~ 319 (336)
T PRK14974 240 LMDELKKIVRVTKPDLVIFVGDALAGNDAVEQAREFNEAVGIDGVILTKVDADAKGGAALSIAYVIGKPILFLGVGQGYD 319 (336)
T ss_pred HHHHHHHHHHhhCCceEEEeeccccchhHHHHHHHHHhcCCCCEEEEeeecCCCCccHHHHHHHHHCcCEEEEeCCCChh
Confidence 58999999999999999999999999999999999998899999999999999999999999999999999999999999
Q ss_pred CCCCCChhHHHHHhhCC
Q 022952 81 DLEPFYPDRMAGRILGM 97 (289)
Q Consensus 81 DLe~f~p~~la~rlLG~ 97 (289)
||++|+|++|+++|||.
T Consensus 320 Dl~~~~~~~~v~~llg~ 336 (336)
T PRK14974 320 DLIPFDPDWFVDKLLGE 336 (336)
T ss_pred hcccCCHHHHHHHHhCC
Confidence 99999999999999973
No 11
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=99.89 E-value=1.2e-23 Score=195.97 Aligned_cols=96 Identities=23% Similarity=0.423 Sum_probs=91.9
Q ss_pred ChHHHHHHHHHhCCCeEEEEEeCcCcH-HHHHHHHHhhhhcCCCeEEEecccCCCCCCccccceeccCCCeEEEecCCCC
Q 022952 1 MMDELKDVKRVLNPTEVLLVVDAMTGQ-EAAALVTTFNIEIGITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGERM 79 (289)
Q Consensus 1 Lm~ELk~i~~~~~P~ev~LVldAttgq-da~~~a~~F~~~v~i~gvIlTKlDetargG~aLS~~~~t~~PI~FIgtGQkV 79 (289)
+|+||.++.+..+|+++|||+||++++ |+.+++++|+. ++++++||||+|||+++|++||++..+++||+|+|+||+|
T Consensus 172 ~l~el~~~~~~~~~~~~~LVl~a~~~~~d~~~~~~~f~~-~~~~~~I~TKlDet~~~G~~l~~~~~~~~Pi~~it~Gq~v 250 (270)
T PRK06731 172 TVEEMIETMGQVEPDYICLTLSASMKSKDMIEIITNFKD-IHIDGIVFTKFDETASSGELLKIPAVSSAPIVLMTDGQDV 250 (270)
T ss_pred HHHHHHHHHhhhCCCeEEEEEcCccCHHHHHHHHHHhCC-CCCCEEEEEeecCCCCccHHHHHHHHHCcCEEEEeCCCCC
Confidence 478999999999999999999999776 99999999998 9999999999999999999999999999999999999999
Q ss_pred -CCCCCCChhHHHHHhhCC
Q 022952 80 -EDLEPFYPDRMAGRILGM 97 (289)
Q Consensus 80 -dDLe~f~p~~la~rlLG~ 97 (289)
|||+++++++++++|||-
T Consensus 251 p~di~~a~~~~l~~~~~~~ 269 (270)
T PRK06731 251 KKNIHIATAEHLAKQMLQT 269 (270)
T ss_pred CcchhhCCHHHHHHHHhcC
Confidence 999999999999999984
No 12
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=99.88 E-value=2.8e-23 Score=192.93 Aligned_cols=95 Identities=49% Similarity=0.813 Sum_probs=92.1
Q ss_pred ChHHHHHHHHHhC------CCeEEEEEeCcCcHHHHHHHHHhhhhcCCCeEEEecccCCCCCCccccceeccCCCeEEEe
Q 022952 1 MMDELKDVKRVLN------PTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAALSVKEVSGKPIKLVG 74 (289)
Q Consensus 1 Lm~ELk~i~~~~~------P~ev~LVldAttgqda~~~a~~F~~~v~i~gvIlTKlDetargG~aLS~~~~t~~PI~FIg 74 (289)
+|+||+++.+.++ |++++||+||++|+++.+++..|.+.++++|+|+||+|||+++|++||+...+++||.|+|
T Consensus 172 ~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~~~~~~~~~~~f~~~~~~~g~IlTKlDe~~~~G~~l~~~~~~~~Pi~~~~ 251 (272)
T TIGR00064 172 LMDELKKIKRVIKKVDKDAPDEVLLVLDATTGQNALEQAKVFNEAVGLTGIILTKLDGTAKGGIILSIAYELKLPIKFIG 251 (272)
T ss_pred HHHHHHHHHHHHhcccCCCCceEEEEEECCCCHHHHHHHHHHHhhCCCCEEEEEccCCCCCccHHHHHHHHHCcCEEEEe
Confidence 4789999999988 9999999999999999999999998899999999999999999999999999999999999
Q ss_pred cCCCCCCCCCCChhHHHHHhh
Q 022952 75 RGERMEDLEPFYPDRMAGRIL 95 (289)
Q Consensus 75 tGQkVdDLe~f~p~~la~rlL 95 (289)
+||+++||++|+|++|+++||
T Consensus 252 ~Gq~~~dl~~~~~~~~~~~ll 272 (272)
T TIGR00064 252 VGEKIDDLAPFDADWFVEALF 272 (272)
T ss_pred CCCChHhCccCCHHHHHHHhC
Confidence 999999999999999999986
No 13
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=99.88 E-value=3e-23 Score=196.88 Aligned_cols=97 Identities=46% Similarity=0.836 Sum_probs=92.6
Q ss_pred ChHHHHHHHHHh------CCCeEEEEEeCcCcHHHHHHHHHhhhhcCCCeEEEecccCCCCCCccccceeccCCCeEEEe
Q 022952 1 MMDELKDVKRVL------NPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAALSVKEVSGKPIKLVG 74 (289)
Q Consensus 1 Lm~ELk~i~~~~------~P~ev~LVldAttgqda~~~a~~F~~~v~i~gvIlTKlDetargG~aLS~~~~t~~PI~FIg 74 (289)
+|+||+++.+++ .|++++||+||++|++++.++..|++.++++|+|+||+|+|+++|++||+...+++||.|||
T Consensus 214 l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~g~~~~~~a~~f~~~~~~~giIlTKlD~t~~~G~~l~~~~~~~~Pi~~v~ 293 (318)
T PRK10416 214 LMEELKKIKRVIKKADPDAPHEVLLVLDATTGQNALSQAKAFHEAVGLTGIILTKLDGTAKGGVVFAIADELGIPIKFIG 293 (318)
T ss_pred HHHHHHHHHHHHhhhcCCCCceEEEEEECCCChHHHHHHHHHHhhCCCCEEEEECCCCCCCccHHHHHHHHHCCCEEEEe
Confidence 589999999865 59999999999999999999999998899999999999999999999999999999999999
Q ss_pred cCCCCCCCCCCChhHHHHHhhCC
Q 022952 75 RGERMEDLEPFYPDRMAGRILGM 97 (289)
Q Consensus 75 tGQkVdDLe~f~p~~la~rlLG~ 97 (289)
+||+||||++|+|++|+++|||.
T Consensus 294 ~Gq~~~Dl~~~~~~~~~~~ll~~ 316 (318)
T PRK10416 294 VGEGIDDLQPFDAEEFVDALLGG 316 (318)
T ss_pred CCCChhhCccCCHHHHHHHHhCC
Confidence 99999999999999999999974
No 14
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=99.87 E-value=2.4e-22 Score=195.68 Aligned_cols=104 Identities=22% Similarity=0.307 Sum_probs=93.1
Q ss_pred hHHHHHHHHHhC-CCeEEEEEeCcCcH-HHHHHHHHhhhhcCCCeEEEecccCCCCCCccccceeccCCCeEEEecCCCC
Q 022952 2 MDELKDVKRVLN-PTEVLLVVDAMTGQ-EAAALVTTFNIEIGITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGERM 79 (289)
Q Consensus 2 m~ELk~i~~~~~-P~ev~LVldAttgq-da~~~a~~F~~~v~i~gvIlTKlDetargG~aLS~~~~t~~PI~FIgtGQkV 79 (289)
++||.++.+... |.++|||+||++++ ++.+++++|.. ++++++||||+|||+++|++||++..+++||+|||+||+|
T Consensus 273 l~el~~~l~~~~~~~e~~LVlsat~~~~~~~~~~~~~~~-~~~~~~I~TKlDet~~~G~~l~~~~~~~~Pi~yit~Gq~v 351 (388)
T PRK12723 273 LAEMKELLNACGRDAEFHLAVSSTTKTSDVKEIFHQFSP-FSYKTVIFTKLDETTCVGNLISLIYEMRKEVSYVTDGQIV 351 (388)
T ss_pred HHHHHHHHHhcCCCCeEEEEEcCCCCHHHHHHHHHHhcC-CCCCEEEEEeccCCCcchHHHHHHHHHCCCEEEEeCCCCC
Confidence 578888888776 55999999999999 77789999986 9999999999999999999999999999999999999999
Q ss_pred -CCCCCCChhHHHHHhhCC--CchhHHHHH
Q 022952 80 -EDLEPFYPDRMAGRILGM--GDVLSFVEK 106 (289)
Q Consensus 80 -dDLe~f~p~~la~rlLG~--gDi~sLvEk 106 (289)
|||++|+|++|+++|+|+ +|-..++.|
T Consensus 352 PeDl~~~~~~~~~~~l~g~~~~~~~~~~~~ 381 (388)
T PRK12723 352 PHNISIAEPLTFIKKINGYRISDDAEFIRK 381 (388)
T ss_pred hhhhhhCCHHHHHHHhcCCCccchHHHHHH
Confidence 999999999999999998 343344444
No 15
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=99.87 E-value=2.2e-22 Score=196.95 Aligned_cols=96 Identities=23% Similarity=0.423 Sum_probs=92.0
Q ss_pred ChHHHHHHHHHhCCCeEEEEEeCcCcH-HHHHHHHHhhhhcCCCeEEEecccCCCCCCccccceeccCCCeEEEecCCCC
Q 022952 1 MMDELKDVKRVLNPTEVLLVVDAMTGQ-EAAALVTTFNIEIGITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGERM 79 (289)
Q Consensus 1 Lm~ELk~i~~~~~P~ev~LVldAttgq-da~~~a~~F~~~v~i~gvIlTKlDetargG~aLS~~~~t~~PI~FIgtGQkV 79 (289)
+|+||.++.+...|++++||+||++++ |+.++++.|+. ++++++||||+|||+++|++||++..+++||+|+|+||+|
T Consensus 338 lm~EL~~~lk~~~PdevlLVLsATtk~~d~~~i~~~F~~-~~idglI~TKLDET~k~G~iLni~~~~~lPIsyit~GQ~V 416 (436)
T PRK11889 338 TVEEMIETMGQVEPDYICLTLSASMKSKDMIEIITNFKD-IHIDGIVFTKFDETASSGELLKIPAVSSAPIVLMTDGQDV 416 (436)
T ss_pred HHHHHHHHHhhcCCCeEEEEECCccChHHHHHHHHHhcC-CCCCEEEEEcccCCCCccHHHHHHHHHCcCEEEEeCCCCC
Confidence 478999999989999999999999887 88999999998 9999999999999999999999999999999999999999
Q ss_pred -CCCCCCChhHHHHHhhCC
Q 022952 80 -EDLEPFYPDRMAGRILGM 97 (289)
Q Consensus 80 -dDLe~f~p~~la~rlLG~ 97 (289)
|||++++|++++++|||-
T Consensus 417 PeDI~~A~~~~L~~~llg~ 435 (436)
T PRK11889 417 KKNIHIATAEHLAKQMLQT 435 (436)
T ss_pred CcchhhCCHHHHHHHHhcC
Confidence 999999999999999984
No 16
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=99.85 E-value=1.2e-21 Score=191.19 Aligned_cols=95 Identities=34% Similarity=0.520 Sum_probs=92.7
Q ss_pred hHHHHHHHHHhCCCeEEEEEeCcCcH-HHHHHHHHhhhhcCCCeEEEecccCCCCCCccccceeccCCCeEEEecCCCC-
Q 022952 2 MDELKDVKRVLNPTEVLLVVDAMTGQ-EAAALVTTFNIEIGITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGERM- 79 (289)
Q Consensus 2 m~ELk~i~~~~~P~ev~LVldAttgq-da~~~a~~F~~~v~i~gvIlTKlDetargG~aLS~~~~t~~PI~FIgtGQkV- 79 (289)
++||+++.++..+.++|||+||+++. |+.+++++|+. +|++||||||+|||++.|.++|+++++++||+|+|+||+|
T Consensus 300 i~el~~~~~~~~~i~~~Lvlsat~K~~dlkei~~~f~~-~~i~~~I~TKlDET~s~G~~~s~~~e~~~PV~YvT~GQ~VP 378 (407)
T COG1419 300 IEELKELIDVSHSIEVYLVLSATTKYEDLKEIIKQFSL-FPIDGLIFTKLDETTSLGNLFSLMYETRLPVSYVTNGQRVP 378 (407)
T ss_pred HHHHHHHHhccccceEEEEEecCcchHHHHHHHHHhcc-CCcceeEEEcccccCchhHHHHHHHHhCCCeEEEeCCCCCC
Confidence 68999999999999999999999998 89999999998 9999999999999999999999999999999999999999
Q ss_pred CCCCCCChhHHHHHhhCC
Q 022952 80 EDLEPFYPDRMAGRILGM 97 (289)
Q Consensus 80 dDLe~f~p~~la~rlLG~ 97 (289)
|||..++|++||++++|.
T Consensus 379 eDI~va~~~~Lv~~~~g~ 396 (407)
T COG1419 379 EDIVVANPDYLVRRILGT 396 (407)
T ss_pred chhhhcChHHHHHHHhcc
Confidence 999999999999999996
No 17
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=99.84 E-value=3.5e-21 Score=187.73 Aligned_cols=98 Identities=19% Similarity=0.322 Sum_probs=92.7
Q ss_pred ChHHHHHHHHHhCCCeEEEEEeCcCcH-HHHHHHHHhhhhcCCCeEEEecccCCCCCCccccceeccCCCeEEEecCCCC
Q 022952 1 MMDELKDVKRVLNPTEVLLVVDAMTGQ-EAAALVTTFNIEIGITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGERM 79 (289)
Q Consensus 1 Lm~ELk~i~~~~~P~ev~LVldAttgq-da~~~a~~F~~~v~i~gvIlTKlDetargG~aLS~~~~t~~PI~FIgtGQkV 79 (289)
+|+||+.+.+.+.|++++||+||++++ |+.++++.|+. ++++++||||+|||+++|++||++..+++||+|+|+||+|
T Consensus 303 ~l~EL~~l~~~~~p~~~~LVLsag~~~~d~~~i~~~f~~-l~i~glI~TKLDET~~~G~~Lsv~~~tglPIsylt~GQ~V 381 (407)
T PRK12726 303 SVSEISAYTDVVHPDLTCFTFSSGMKSADVMTILPKLAE-IPIDGFIITKMDETTRIGDLYTVMQETNLPVLYMTDGQNI 381 (407)
T ss_pred HHHHHHHHhhccCCceEEEECCCcccHHHHHHHHHhcCc-CCCCEEEEEcccCCCCccHHHHHHHHHCCCEEEEecCCCC
Confidence 478999999999999999999998887 89999999996 9999999999999999999999999999999999999999
Q ss_pred -CCCCCCChhHHHHHhhCCCc
Q 022952 80 -EDLEPFYPDRMAGRILGMGD 99 (289)
Q Consensus 80 -dDLe~f~p~~la~rlLG~gD 99 (289)
|||+.|+|+.|+++++|.+.
T Consensus 382 pdDi~~a~~~~Lv~~ll~~~~ 402 (407)
T PRK12726 382 TENIFRPKSRWLAERFVGTDR 402 (407)
T ss_pred CcccCCCCHHHHHHHHhccch
Confidence 89999999999999999643
No 18
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=99.83 E-value=4.6e-21 Score=199.35 Aligned_cols=98 Identities=23% Similarity=0.352 Sum_probs=91.1
Q ss_pred ChHHHHHHHHHhCCCeEEEEEeCcCcH-HHHHHHHHhhhh--cCCCeEEEecccCCCCCCccccceeccCCCeEEEecCC
Q 022952 1 MMDELKDVKRVLNPTEVLLVVDAMTGQ-EAAALVTTFNIE--IGITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGE 77 (289)
Q Consensus 1 Lm~ELk~i~~~~~P~ev~LVldAttgq-da~~~a~~F~~~--v~i~gvIlTKlDetargG~aLS~~~~t~~PI~FIgtGQ 77 (289)
+++|++.+.+...|+++|||+||++++ ++.+++++|+.. ++++|+||||+|||+++|++||++..+++||+|||+||
T Consensus 281 l~eel~~l~~~~~p~e~~LVLsAt~~~~~l~~i~~~f~~~~~~~i~glIlTKLDEt~~~G~iL~i~~~~~lPI~yit~GQ 360 (767)
T PRK14723 281 VSEQIAMLCGVGRPVRRLLLLNAASHGDTLNEVVHAYRHGAGEDVDGCIITKLDEATHLGPALDTVIRHRLPVHYVSTGQ 360 (767)
T ss_pred HHHHHHHHhccCCCCeEEEEECCCCcHHHHHHHHHHHhhcccCCCCEEEEeccCCCCCccHHHHHHHHHCCCeEEEecCC
Confidence 478999999889999999999999998 555699999873 38999999999999999999999999999999999999
Q ss_pred CC-CCCCCCChhHHHHHhhCCC
Q 022952 78 RM-EDLEPFYPDRMAGRILGMG 98 (289)
Q Consensus 78 kV-dDLe~f~p~~la~rlLG~g 98 (289)
+| |||++|+|+.|+++||+.+
T Consensus 361 ~VPdDL~~a~~~~lv~~ll~~~ 382 (767)
T PRK14723 361 KVPEHLELAQADELVDRAFATP 382 (767)
T ss_pred CChhhcccCCHHHHHHHHhccc
Confidence 99 9999999999999999954
No 19
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=99.83 E-value=7.3e-21 Score=186.99 Aligned_cols=97 Identities=21% Similarity=0.316 Sum_probs=90.5
Q ss_pred ChHHHHHHHHHhCCCeEEEEEeCcCcH-HHHHHHHHhhhhcCCCeEEEecccCCCCCCccccceeccCCCeEEEecCCCC
Q 022952 1 MMDELKDVKRVLNPTEVLLVVDAMTGQ-EAAALVTTFNIEIGITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGERM 79 (289)
Q Consensus 1 Lm~ELk~i~~~~~P~ev~LVldAttgq-da~~~a~~F~~~v~i~gvIlTKlDetargG~aLS~~~~t~~PI~FIgtGQkV 79 (289)
+++||+.+.....|++++||+||++++ ++.+++..|+. ++++|+||||+|||+++|++||++..+++||+|+|+||+|
T Consensus 287 ~~~~l~~l~~~~~~~~~~LVl~at~~~~~~~~~~~~f~~-~~~~~~I~TKlDEt~~~G~~l~~~~~~~lPi~yvt~Gq~V 365 (420)
T PRK14721 287 LAEQIAMLSQCGTQVKHLLLLNATSSGDTLDEVISAYQG-HGIHGCIITKVDEAASLGIALDAVIRRKLVLHYVTNGQKV 365 (420)
T ss_pred HHHHHHHHhccCCCceEEEEEcCCCCHHHHHHHHHHhcC-CCCCEEEEEeeeCCCCccHHHHHHHHhCCCEEEEECCCCc
Confidence 468888887777899999999999988 67778999986 9999999999999999999999999999999999999999
Q ss_pred -CCCCCCChhHHHHHhhCCC
Q 022952 80 -EDLEPFYPDRMAGRILGMG 98 (289)
Q Consensus 80 -dDLe~f~p~~la~rlLG~g 98 (289)
|||++|+|+.|++++|+..
T Consensus 366 P~Dl~~a~~~~lv~~ll~~~ 385 (420)
T PRK14721 366 PEDLHEANSRYLLHRIFKPS 385 (420)
T ss_pred hhhhhhCCHHHHHHHHhcCc
Confidence 9999999999999999864
No 20
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=99.82 E-value=1.4e-20 Score=185.27 Aligned_cols=94 Identities=17% Similarity=0.275 Sum_probs=86.7
Q ss_pred hHHHHHHHHHh---CCCeEEEEEeCcCcH-HHHHHHHHhhhhcCCCeEEEecccCCCCCCccccceeccCCCeEEEecCC
Q 022952 2 MDELKDVKRVL---NPTEVLLVVDAMTGQ-EAAALVTTFNIEIGITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGE 77 (289)
Q Consensus 2 m~ELk~i~~~~---~P~ev~LVldAttgq-da~~~a~~F~~~v~i~gvIlTKlDetargG~aLS~~~~t~~PI~FIgtGQ 77 (289)
++||.++.++. .|.++|||+||++|+ ++.++++.|+. ++++++||||+|||+++|++||+.+.+++||+|+|+||
T Consensus 318 l~eL~~~~~~~~~~~~~e~~LVLsAt~~~~~~~~~~~~f~~-~~~~glIlTKLDEt~~~G~il~i~~~~~lPI~ylt~GQ 396 (432)
T PRK12724 318 LERMQSFYSCFGEKDSVENLLVLSSTSSYHHTLTVLKAYES-LNYRRILLTKLDEADFLGSFLELADTYSKSFTYLSVGQ 396 (432)
T ss_pred HHHHHHHHHhhcCCCCCeEEEEEeCCCCHHHHHHHHHHhcC-CCCCEEEEEcccCCCCccHHHHHHHHHCCCEEEEecCC
Confidence 67888888775 467999999999999 67778888865 99999999999999999999999999999999999999
Q ss_pred CC-CCCCCCChhHHHHHhhC
Q 022952 78 RM-EDLEPFYPDRMAGRILG 96 (289)
Q Consensus 78 kV-dDLe~f~p~~la~rlLG 96 (289)
+| +||++++++.|+++|+=
T Consensus 397 ~VPeDi~~A~~~~l~~~i~~ 416 (432)
T PRK12724 397 EVPFDILNATKNLMAECVVF 416 (432)
T ss_pred CCCCCHHHhhHHHHHHHhcC
Confidence 99 99999999999999983
No 21
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=99.79 E-value=1e-19 Score=176.59 Aligned_cols=96 Identities=22% Similarity=0.315 Sum_probs=88.1
Q ss_pred hHHHHHHHHHhCCCeEEEEEeCcCcHHH-HHHHHHhhhhc--------CCCeEEEecccCCCCCCccccceeccCCCeEE
Q 022952 2 MDELKDVKRVLNPTEVLLVVDAMTGQEA-AALVTTFNIEI--------GITGAILTKLDGDSRGGAALSVKEVSGKPIKL 72 (289)
Q Consensus 2 m~ELk~i~~~~~P~ev~LVldAttgqda-~~~a~~F~~~v--------~i~gvIlTKlDetargG~aLS~~~~t~~PI~F 72 (289)
+++++.+.....|.+++|||||+++++. .+++++|.... +++||||||+|||+++|++||++..+++||+|
T Consensus 234 ~e~La~L~~~~~~~~~lLVLsAts~~~~l~evi~~f~~~~~~p~~~~~~~~~~I~TKlDEt~~~G~~l~~~~~~~lPi~y 313 (374)
T PRK14722 234 SDQIAMLHGADTPVQRLLLLNATSHGDTLNEVVQAYRSAAGQPKAALPDLAGCILTKLDEASNLGGVLDTVIRYKLPVHY 313 (374)
T ss_pred HHHHHHHhccCCCCeEEEEecCccChHHHHHHHHHHHHhhcccccccCCCCEEEEeccccCCCccHHHHHHHHHCcCeEE
Confidence 5788888777789999999999999955 56889999743 69999999999999999999999999999999
Q ss_pred EecCCCC-CCCCCCChhHHHHHhhCC
Q 022952 73 VGRGERM-EDLEPFYPDRMAGRILGM 97 (289)
Q Consensus 73 IgtGQkV-dDLe~f~p~~la~rlLG~ 97 (289)
+|+||+| |||++++++.+++++++.
T Consensus 314 vt~Gq~VPedl~~a~~~~l~~~~~~~ 339 (374)
T PRK14722 314 VSTGQKVPENLYVATKKFLLKSAFCA 339 (374)
T ss_pred EecCCCCCcccccCCHHHHHHHHhcc
Confidence 9999999 999999999999999974
No 22
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=99.79 E-value=1.5e-19 Score=180.45 Aligned_cols=97 Identities=26% Similarity=0.340 Sum_probs=86.4
Q ss_pred hHHHHHHHHHhCCCeEEEEEeCcCcH-HHHHHHHHhhhhcCCCeEEEecccCCCCCCccccceeccCCCeEEEecCCCC-
Q 022952 2 MDELKDVKRVLNPTEVLLVVDAMTGQ-EAAALVTTFNIEIGITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGERM- 79 (289)
Q Consensus 2 m~ELk~i~~~~~P~ev~LVldAttgq-da~~~a~~F~~~v~i~gvIlTKlDetargG~aLS~~~~t~~PI~FIgtGQkV- 79 (289)
++++..+.....|.+++||+||++++ ++.++++.|+. ++++++||||+||++++|.+||+++.+++||+|||+||+|
T Consensus 353 ~e~~~~l~~~~~p~e~~LVLdAt~~~~~l~~i~~~f~~-~~~~g~IlTKlDet~~~G~~l~i~~~~~lPI~yvt~GQ~VP 431 (484)
T PRK06995 353 SEQIAMLHGAGAPVKRLLLLNATSHGDTLNEVVQAYRG-PGLAGCILTKLDEAASLGGALDVVIRYKLPLHYVSNGQRVP 431 (484)
T ss_pred HHHHHHHhccCCCCeeEEEEeCCCcHHHHHHHHHHhcc-CCCCEEEEeCCCCcccchHHHHHHHHHCCCeEEEecCCCCh
Confidence 34555555555699999999999999 55567888887 9999999999999999999999999999999999999999
Q ss_pred CCCCCCChhHHHHHhhCCCc
Q 022952 80 EDLEPFYPDRMAGRILGMGD 99 (289)
Q Consensus 80 dDLe~f~p~~la~rlLG~gD 99 (289)
|||++|+++.|++++|+.++
T Consensus 432 eDL~~a~~~~lv~~ll~~~~ 451 (484)
T PRK06995 432 EDLHLANKKFLLHRAFCAPR 451 (484)
T ss_pred hhhccCCHHHHHHHHhcCcc
Confidence 99999999999999999743
No 23
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=99.77 E-value=4e-19 Score=174.63 Aligned_cols=96 Identities=31% Similarity=0.463 Sum_probs=89.0
Q ss_pred hHHHHHHHH-HhCCCeEEEEEeCcCcH-HHHHHHHHhhhhcCCCeEEEecccCCCCCCccccceeccCCCeEEEecCCCC
Q 022952 2 MDELKDVKR-VLNPTEVLLVVDAMTGQ-EAAALVTTFNIEIGITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGERM 79 (289)
Q Consensus 2 m~ELk~i~~-~~~P~ev~LVldAttgq-da~~~a~~F~~~v~i~gvIlTKlDetargG~aLS~~~~t~~PI~FIgtGQkV 79 (289)
++||.++.+ ...|.+++||++|++++ ++.++++.|+. +++++||+||+|||+++|+++|++..+++||+|+|+||+|
T Consensus 318 ~~~L~~ll~~~~~~~~~~LVl~a~~~~~~l~~~~~~f~~-~~~~~vI~TKlDet~~~G~i~~~~~~~~lPv~yit~Gq~V 396 (424)
T PRK05703 318 IEELKALIEFSGEPIDVYLVLSATTKYEDLKDIYKHFSR-LPLDGLIFTKLDETSSLGSILSLLIESGLPISYLTNGQRV 396 (424)
T ss_pred HHHHHHHHhccCCCCeEEEEEECCCCHHHHHHHHHHhCC-CCCCEEEEecccccccccHHHHHHHHHCCCEEEEeCCCCC
Confidence 578888887 55789999999999998 67778899986 9999999999999999999999999999999999999999
Q ss_pred -CCCCCCChhHHHHHhhCCC
Q 022952 80 -EDLEPFYPDRMAGRILGMG 98 (289)
Q Consensus 80 -dDLe~f~p~~la~rlLG~g 98 (289)
|||++|+|++|+++|||..
T Consensus 397 pdDl~~a~~~~l~~~ll~~~ 416 (424)
T PRK05703 397 PDDIKVANPEELVRLLLGGF 416 (424)
T ss_pred hhhhhhCCHHHHHHHHhccc
Confidence 9999999999999999863
No 24
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=99.64 E-value=2.6e-16 Score=158.80 Aligned_cols=94 Identities=29% Similarity=0.346 Sum_probs=85.0
Q ss_pred hHHHHHHHHHhCCCeEEEEEeCcCcH-HHHHHHHHhhhhcCCCeEEEecccCCCCCCccccceeccCCCeEEEecCCCC-
Q 022952 2 MDELKDVKRVLNPTEVLLVVDAMTGQ-EAAALVTTFNIEIGITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGERM- 79 (289)
Q Consensus 2 m~ELk~i~~~~~P~ev~LVldAttgq-da~~~a~~F~~~v~i~gvIlTKlDetargG~aLS~~~~t~~PI~FIgtGQkV- 79 (289)
++||..+... .+.+++||++++++. +..++++.|.. ++++||||||+||+.++|++||+...+++||+|||+||+|
T Consensus 447 ~eeL~~L~aa-~~~a~lLVLpAtss~~Dl~eii~~f~~-~~~~gvILTKlDEt~~lG~aLsv~~~~~LPI~yvt~GQ~VP 524 (559)
T PRK12727 447 AAQLNWLRAA-RQVTSLLVLPANAHFSDLDEVVRRFAH-AKPQGVVLTKLDETGRFGSALSVVVDHQMPITWVTDGQRVP 524 (559)
T ss_pred HHHHHHHHHh-hcCCcEEEEECCCChhHHHHHHHHHHh-hCCeEEEEecCcCccchhHHHHHHHHhCCCEEEEeCCCCch
Confidence 5677666543 467899999999986 88889999997 8999999999999999999999999999999999999999
Q ss_pred CCCCCCChhHHHHHhhCC
Q 022952 80 EDLEPFYPDRMAGRILGM 97 (289)
Q Consensus 80 dDLe~f~p~~la~rlLG~ 97 (289)
|||++|++..|++++...
T Consensus 525 eDL~~A~~~~Lv~r~~~l 542 (559)
T PRK12727 525 DDLHRANAASLVLRLEDL 542 (559)
T ss_pred hhhhcCCHHHHHHHHHHH
Confidence 999999999999998754
No 25
>KOG0781 consensus Signal recognition particle receptor, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.41 E-value=1.8e-13 Score=136.13 Aligned_cols=95 Identities=32% Similarity=0.551 Sum_probs=91.6
Q ss_pred ChHHHHHHHHHhCCCeEEEEEeCcCcHHHHHHHHHhhhhc-------CCCeEEEecccC-CCCCCccccceeccCCCeEE
Q 022952 1 MMDELKDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEI-------GITGAILTKLDG-DSRGGAALSVKEVSGKPIKL 72 (289)
Q Consensus 1 Lm~ELk~i~~~~~P~ev~LVldAttgqda~~~a~~F~~~v-------~i~gvIlTKlDe-targG~aLS~~~~t~~PI~F 72 (289)
||..|.++..+.+||.|++|-.|..|.|+++|+..|+.++ .|||+||||+|. +.+.|.++|.+|.++.||.|
T Consensus 484 lm~~l~k~~~~~~pd~i~~vgealvg~dsv~q~~~fn~al~~~~~~r~id~~~ltk~dtv~d~vg~~~~m~y~~~~pi~f 563 (587)
T KOG0781|consen 484 LMTSLAKLIKVNKPDLILFVGEALVGNDSVDQLKKFNRALADHSTPRLIDGILLTKFDTVDDKVGAAVSMVYITGKPILF 563 (587)
T ss_pred HHHHHHHHHhcCCCceEEEehhhhhCcHHHHHHHHHHHHHhcCCCccccceEEEEeccchhhHHHHHhhheeecCCceEE
Confidence 6899999999999999999999999999999999999987 399999999999 89999999999999999999
Q ss_pred EecCCCCCCCCCCChhHHHHHhh
Q 022952 73 VGRGERMEDLEPFYPDRMAGRIL 95 (289)
Q Consensus 73 IgtGQkVdDLe~f~p~~la~rlL 95 (289)
+|+||.+.||...+.+++|+.|+
T Consensus 564 vg~gqtysdlr~l~v~~vv~~lm 586 (587)
T KOG0781|consen 564 VGVGQTYSDLRKLNVKAVVATLM 586 (587)
T ss_pred EecCcchhhhhhccHHHHHHHhh
Confidence 99999999999999999999876
No 26
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=99.26 E-value=1e-11 Score=105.93 Aligned_cols=73 Identities=67% Similarity=1.065 Sum_probs=67.7
Q ss_pred hHHHHHHHHHhCCCeEEEEEeCcCcHHHHHHHHHhhhhcCCCeEEEecccCCCCCCccccceeccCCCeEEEe
Q 022952 2 MDELKDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAALSVKEVSGKPIKLVG 74 (289)
Q Consensus 2 m~ELk~i~~~~~P~ev~LVldAttgqda~~~a~~F~~~v~i~gvIlTKlDetargG~aLS~~~~t~~PI~FIg 74 (289)
++++..+.+...|++++||+|+.+++++.+.+..|.+.++++++|+||+|++.++|.++++...+++||.|+|
T Consensus 101 l~~l~~l~~~~~~~~~~lVv~~~~~~~~~~~~~~~~~~~~~~~viltk~D~~~~~g~~~~~~~~~~~p~~~~~ 173 (173)
T cd03115 101 MEELKKIKRVVKPDEVLLVVDAMTGQDAVNQAKAFNEALGITGVILTKLDGDARGGAALSIRAVTGKPIKFIG 173 (173)
T ss_pred HHHHHHHHhhcCCCeEEEEEECCCChHHHHHHHHHHhhCCCCEEEEECCcCCCCcchhhhhHHHHCcCeEeeC
Confidence 4667777777789999999999999999999999987799999999999999999999999999999999996
No 27
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=91.73 E-value=0.37 Score=44.77 Aligned_cols=60 Identities=23% Similarity=0.181 Sum_probs=44.2
Q ss_pred HHhC-CC-eEEEEEeCcCcH---HHHHHHHHhhhhcCCCeEEEecccCCCCCCccccceeccCCC
Q 022952 10 RVLN-PT-EVLLVVDAMTGQ---EAAALVTTFNIEIGITGAILTKLDGDSRGGAALSVKEVSGKP 69 (289)
Q Consensus 10 ~~~~-P~-ev~LVldAttgq---da~~~a~~F~~~v~i~gvIlTKlDetargG~aLS~~~~t~~P 69 (289)
.+++ |. -+++|+||.++. ++.++++.|.+.-..+-+|+||+|...++..+++++.....|
T Consensus 157 ~yi~~~~~IIL~Vvda~~d~~~~d~l~ia~~ld~~~~rti~ViTK~D~~~~~~~~~~~~~~~~~~ 221 (240)
T smart00053 157 QFISKEECLILAVTPANVDLANSDALKLAKEVDPQGERTIGVITKLDLMDEGTDARDILENKLLP 221 (240)
T ss_pred HHHhCccCeEEEEEECCCCCCchhHHHHHHHHHHcCCcEEEEEECCCCCCccHHHHHHHhCCccc
Confidence 3444 43 688999998763 678899999874456666999999998888788776654433
No 28
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=88.61 E-value=0.53 Score=41.07 Aligned_cols=64 Identities=23% Similarity=0.235 Sum_probs=47.2
Q ss_pred HhCCCeEEEEEeCcCcHHHHHHHHHhhhhcCCCeEEEecccCCCCCCccc---cceeccCCCeEEEe
Q 022952 11 VLNPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAAL---SVKEVSGKPIKLVG 74 (289)
Q Consensus 11 ~~~P~ev~LVldAttgqda~~~a~~F~~~v~i~gvIlTKlDetargG~aL---S~~~~t~~PI~FIg 74 (289)
.-+||-+++|+||+.-..-+..+..+.+.=-+--+++||+|+..+-|--+ -+....++||.++.
T Consensus 76 ~~~~D~ii~VvDa~~l~r~l~l~~ql~e~g~P~vvvlN~~D~a~~~g~~id~~~Ls~~Lg~pvi~~s 142 (156)
T PF02421_consen 76 SEKPDLIIVVVDATNLERNLYLTLQLLELGIPVVVVLNKMDEAERKGIEIDAEKLSERLGVPVIPVS 142 (156)
T ss_dssp HTSSSEEEEEEEGGGHHHHHHHHHHHHHTTSSEEEEEETHHHHHHTTEEE-HHHHHHHHTS-EEEEB
T ss_pred hcCCCEEEEECCCCCHHHHHHHHHHHHHcCCCEEEEEeCHHHHHHcCCEECHHHHHHHhCCCEEEEE
Confidence 34799999999999877555555555552235678899999999999765 34567899988875
No 29
>COG0106 HisA Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase [Amino acid transport and metabolism]
Probab=77.21 E-value=3.2 Score=39.06 Aligned_cols=109 Identities=17% Similarity=0.343 Sum_probs=78.3
Q ss_pred HHHHHHHHhCCCeEEEEEeCcCcH------------HHHHHHHHhhhhcCCCeEEEecccCCCCCCcc-----ccceecc
Q 022952 4 ELKDVKRVLNPTEVLLVVDAMTGQ------------EAAALVTTFNIEIGITGAILTKLDGDSRGGAA-----LSVKEVS 66 (289)
Q Consensus 4 ELk~i~~~~~P~ev~LVldAttgq------------da~~~a~~F~~~v~i~gvIlTKlDetargG~a-----LS~~~~t 66 (289)
.++++.+... +.+.+-+|+--|. +..+.++.|.. .+..++|+|=+|-+-...|. --++..+
T Consensus 113 ~v~~~~~~~g-~rivv~lD~r~g~vav~GW~e~s~~~~~~l~~~~~~-~g~~~ii~TdI~~DGtl~G~n~~l~~~l~~~~ 190 (241)
T COG0106 113 LVKELCEEYG-DRIVVALDARDGKVAVSGWQEDSGVELEELAKRLEE-VGLAHILYTDISRDGTLSGPNVDLVKELAEAV 190 (241)
T ss_pred HHHHHHHHcC-CcEEEEEEccCCccccccccccccCCHHHHHHHHHh-cCCCeEEEEecccccccCCCCHHHHHHHHHHh
Confidence 3455555544 9999999997743 55678999987 99999999999887776663 3456778
Q ss_pred CCCeEEEecCCCCCCCCCCChh-HHHHHhhCCCchhHHHHHHHHhccHHHHHHHHHHHHhCCcChHHHHHHHH
Q 022952 67 GKPIKLVGRGERMEDLEPFYPD-RMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQKKIMSANFDFNDFLKQTR 138 (289)
Q Consensus 67 ~~PI~FIgtGQkVdDLe~f~p~-~la~rlLG~gDi~sLvEk~~~~~~~~~~~~~~~k~~~g~F~l~Df~~Q~~ 138 (289)
.+|+.|-|---.++||+....- -+..-+.| +.+-.|+||+.++++..+
T Consensus 191 ~ipviaSGGv~s~~Di~~l~~~~G~~GvIvG------------------------~ALy~g~~~l~ea~~~~~ 239 (241)
T COG0106 191 DIPVIASGGVSSLDDIKALKELSGVEGVIVG------------------------RALYEGKFTLEEALACVR 239 (241)
T ss_pred CcCEEEecCcCCHHHHHHHHhcCCCcEEEEe------------------------hHHhcCCCCHHHHHHHHh
Confidence 9999999866666887655444 24444444 235578888888887665
No 30
>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit.
Probab=76.70 E-value=21 Score=32.79 Aligned_cols=111 Identities=14% Similarity=0.205 Sum_probs=67.0
Q ss_pred HHHHHHHhCCCeEEEEEeCcC--------------------cHHHHHHHHHhhhhcCCCeEEEecccCCCCCCcc-c---
Q 022952 5 LKDVKRVLNPTEVLLVVDAMT--------------------GQEAAALVTTFNIEIGITGAILTKLDGDSRGGAA-L--- 60 (289)
Q Consensus 5 Lk~i~~~~~P~ev~LVldAtt--------------------gqda~~~a~~F~~~v~i~gvIlTKlDetargG~a-L--- 60 (289)
++++.+...+..+++.+|+-- ..+..+.++.+.+ .+++.+++|=+|.....+++ +
T Consensus 113 ~~~~~~~~~~~~iv~slD~~~g~~~~~~~~~v~i~gw~~~~~~~~~~~~~~l~~-~G~~~iivt~i~~~g~~~g~~~~~~ 191 (254)
T TIGR00735 113 IYELADRFGSQCIVVAIDAKRVYVNSYCWYEVYIYGGRESTGLDAVEWAKEVEK-LGAGEILLTSMDKDGTKSGYDLELT 191 (254)
T ss_pred HHHHHHHcCCCCEEEEEEeccCCCCCCccEEEEEeCCcccCCCCHHHHHHHHHH-cCCCEEEEeCcCcccCCCCCCHHHH
Confidence 445555554478999999642 2367788888886 99999999876664443332 2
Q ss_pred -cceeccCCCeEEEecCCCCCCCCCCChhHHHHHhhCCCchhHHHHHHHHhccHHHHHHHHHHHHhCCcChHHHHHHHHH
Q 022952 61 -SVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQKKIMSANFDFNDFLKQTRT 139 (289)
Q Consensus 61 -S~~~~t~~PI~FIgtGQkVdDLe~f~p~~la~rlLG~gDi~sLvEk~~~~~~~~~~~~~~~k~~~g~F~l~Df~~Q~~~ 139 (289)
.++..++.||...| -..+|+.+... +..|.+.+. -+...+-.|++++.++.++++.
T Consensus 192 ~~i~~~~~ipvia~G--------Gi~s~~di~~~-~~~g~~dgv--------------~~g~a~~~~~~~~~~~~~~~~~ 248 (254)
T TIGR00735 192 KAVSEAVKIPVIASG--------GAGKPEHFYEA-FTKGKADAA--------------LAASVFHYREITIGEVKEYLAE 248 (254)
T ss_pred HHHHHhCCCCEEEeC--------CCCCHHHHHHH-HHcCCccee--------------eEhHHHhCCCCCHHHHHHHHHH
Confidence 22445677877766 34455554432 332322221 1233345678888888877764
No 31
>KOG0908 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=75.47 E-value=2.2 Score=40.72 Aligned_cols=107 Identities=19% Similarity=0.254 Sum_probs=70.0
Q ss_pred CeEEEEEeCcCcH--HHHHHHHHhhhh-cCCCeEEEecccCCCCCCccccceeccCCC-eEEEecCCCCCCCCCCChhHH
Q 022952 15 TEVLLVVDAMTGQ--EAAALVTTFNIE-IGITGAILTKLDGDSRGGAALSVKEVSGKP-IKLVGRGERMEDLEPFYPDRM 90 (289)
Q Consensus 15 ~ev~LVldAttgq--da~~~a~~F~~~-v~i~gvIlTKlDetargG~aLS~~~~t~~P-I~FIgtGQkVdDLe~f~p~~l 90 (289)
.--++|||-+..- =+..||-.|+.- -.+-+.||-|+|-+..-|.|-..-. .-.| -.|.-+|+++|-+.-++
T Consensus 20 g~k~v~Vdfta~wCGPCk~IaP~Fs~lankYp~aVFlkVdVd~c~~taa~~gV-~amPTFiff~ng~kid~~qGAd---- 94 (288)
T KOG0908|consen 20 GGKLVVVDFTASWCGPCKRIAPIFSDLANKYPGAVFLKVDVDECRGTAATNGV-NAMPTFIFFRNGVKIDQIQGAD---- 94 (288)
T ss_pred CceEEEEEEEecccchHHhhhhHHHHhhhhCcccEEEEEeHHHhhchhhhcCc-ccCceEEEEecCeEeeeecCCC----
Confidence 3458889988764 566777777651 1568999999998766655432211 2223 46777899998776554
Q ss_pred HHHhhCCCchhHHHHHHHHhccHHHHHHHHHHHHhCCcChHHHHH
Q 022952 91 AGRILGMGDVLSFVEKAQEVMQQEDAEEMQKKIMSANFDFNDFLK 135 (289)
Q Consensus 91 a~rlLG~gDi~sLvEk~~~~~~~~~~~~~~~k~~~g~F~l~Df~~ 135 (289)
..+|=|+++...+-.-+..-...+-+|+|+|.+|++
T Consensus 95 ---------~~gLe~kv~~~~stsaa~~~~~~~~Kgq~dL~~~I~ 130 (288)
T KOG0908|consen 95 ---------ASGLEEKVAKYASTSAASSGTGDIVKGQMDLKPFID 130 (288)
T ss_pred ---------HHHHHHHHHHHhccCcccccCCCcccceehhhhhhh
Confidence 556677777766543333323337789999999986
No 32
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=74.64 E-value=6.5 Score=33.81 Aligned_cols=73 Identities=21% Similarity=0.246 Sum_probs=42.7
Q ss_pred CCCeEEEEEeCcCcH-H-HHHHHHHh-hhhcCCCeEEEecccCCC-CCCcccc----c-------eeccCCCeEEEe--c
Q 022952 13 NPTEVLLVVDAMTGQ-E-AAALVTTF-NIEIGITGAILTKLDGDS-RGGAALS----V-------KEVSGKPIKLVG--R 75 (289)
Q Consensus 13 ~P~ev~LVldAttgq-d-a~~~a~~F-~~~v~i~gvIlTKlDeta-rgG~aLS----~-------~~~t~~PI~FIg--t 75 (289)
..+-++||+|++.+. . ...+.... ...++ --+++||+|... +.-..+. . ....+.|+.+++ +
T Consensus 88 ~~d~~ilV~d~~~~~~~~~~~~~~~~~~~~~p-~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~Sa~~ 166 (194)
T cd01891 88 MVDGVLLLVDASEGPMPQTRFVLKKALELGLK-PIVVINKIDRPDARPEEVVDEVFDLFIELGATEEQLDFPVLYASAKN 166 (194)
T ss_pred hcCEEEEEEECCCCccHHHHHHHHHHHHcCCC-EEEEEECCCCCCCCHHHHHHHHHHHHHHhCCccccCccCEEEeehhc
Confidence 567899999999864 2 22222222 22244 478899999843 2111111 0 022367888887 7
Q ss_pred CCCCCCCCCCC
Q 022952 76 GERMEDLEPFY 86 (289)
Q Consensus 76 GQkVdDLe~f~ 86 (289)
|+.+++++...
T Consensus 167 g~~~~~~~~~~ 177 (194)
T cd01891 167 GWASLNLEDPS 177 (194)
T ss_pred cccccccccch
Confidence 88887666553
No 33
>cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif. CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form.
Probab=72.69 E-value=17 Score=28.50 Aligned_cols=94 Identities=16% Similarity=0.253 Sum_probs=59.8
Q ss_pred HHHHHHHHHhCCCeEEEEEeCcCcHHHH---HHHHHhhhhcCCCeEEEecccCCCCC--CccccceeccCCCe-EEEecC
Q 022952 3 DELKDVKRVLNPTEVLLVVDAMTGQEAA---ALVTTFNIEIGITGAILTKLDGDSRG--GAALSVKEVSGKPI-KLVGRG 76 (289)
Q Consensus 3 ~ELk~i~~~~~P~ev~LVldAttgqda~---~~a~~F~~~v~i~gvIlTKlDetarg--G~aLS~~~~t~~PI-~FIgtG 76 (289)
+|+.++....+..-+++-.-|+....+. ...+.+.+.. ..+.|-++|.+... ..+.+-....+.|- .|+-.|
T Consensus 4 ~~~~~~i~~~~~k~vvv~F~a~wC~~C~~~~p~l~~la~~~--~~v~~~~vd~d~~~~~~~l~~~~~V~~~Pt~~~~~~G 81 (103)
T cd02985 4 EELDEALKKAKGRLVVLEFALKHSGPSVKIYPTMVKLSRTC--NDVVFLLVNGDENDSTMELCRREKIIEVPHFLFYKDG 81 (103)
T ss_pred HHHHHHHHHcCCCEEEEEEECCCCHhHHHHhHHHHHHHHHC--CCCEEEEEECCCChHHHHHHHHcCCCcCCEEEEEeCC
Confidence 5666666544445567777777654333 3444444433 56788899876642 23334445677884 344789
Q ss_pred CCCCCCCCCChhHHHHHhhCCC
Q 022952 77 ERMEDLEPFYPDRMAGRILGMG 98 (289)
Q Consensus 77 QkVdDLe~f~p~~la~rlLG~g 98 (289)
+.+..+.-++|+.+...++-.|
T Consensus 82 ~~v~~~~G~~~~~l~~~~~~~~ 103 (103)
T cd02985 82 EKIHEEEGIGPDELIGDVLYYG 103 (103)
T ss_pred eEEEEEeCCCHHHHHHHHHhcC
Confidence 8888888999999988887544
No 34
>TIGR00437 feoB ferrous iron transporter FeoB. FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.
Probab=69.76 E-value=4.8 Score=41.97 Aligned_cols=71 Identities=23% Similarity=0.154 Sum_probs=44.5
Q ss_pred hCCCeEEEEEeCcCcHHHHHHHHHhhhhcCCCeEEEecccCCCCCCcc---ccceeccCCCeEEEe--cCCCCCCC
Q 022952 12 LNPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAA---LSVKEVSGKPIKLVG--RGERMEDL 82 (289)
Q Consensus 12 ~~P~ev~LVldAttgqda~~~a~~F~~~v~i~gvIlTKlDetargG~a---LS~~~~t~~PI~FIg--tGQkVdDL 82 (289)
..+|-+++|+|++.-+..........+.=-+--+++||+|...+-|-- -.+....+.|+..++ +|+.++++
T Consensus 71 ~~aDvvI~VvDat~ler~l~l~~ql~~~~~PiIIVlNK~Dl~~~~~i~~d~~~L~~~lg~pvv~tSA~tg~Gi~eL 146 (591)
T TIGR00437 71 EKPDLVVNVVDASNLERNLYLTLQLLELGIPMILALNLVDEAEKKGIRIDEEKLEERLGVPVVPTSATEGRGIERL 146 (591)
T ss_pred cCCCEEEEEecCCcchhhHHHHHHHHhcCCCEEEEEehhHHHHhCCChhhHHHHHHHcCCCEEEEECCCCCCHHHH
Confidence 367899999999987643332222222112446889999996555422 123345678887776 78887654
No 35
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=68.95 E-value=15 Score=33.53 Aligned_cols=113 Identities=15% Similarity=0.093 Sum_probs=60.8
Q ss_pred CCeEEEEEeCcCcHH-----HHHHHHHhhhhcCCCeEEEecccCC-CCCCccccc-eeccCCCeEEEecCCCCCCCCCCC
Q 022952 14 PTEVLLVVDAMTGQE-----AAALVTTFNIEIGITGAILTKLDGD-SRGGAALSV-KEVSGKPIKLVGRGERMEDLEPFY 86 (289)
Q Consensus 14 P~ev~LVldAttgqd-----a~~~a~~F~~~v~i~gvIlTKlDet-argG~aLS~-~~~t~~PI~FIgtGQkVdDLe~f~ 86 (289)
.+-++||+|++.|.. ..+.++.+. +++ -+++||+|.. +....++.- ....+.++.-+..-.-++++....
T Consensus 88 aD~~IlVvd~~~g~~~~~~~~~~~~~~~~--~P~-iivvNK~D~~~a~~~~~~~~i~~~~~~~~~~~~~p~~~~~~~~~~ 164 (237)
T cd04168 88 LDGAILVISAVEGVQAQTRILWRLLRKLN--IPT-IIFVNKIDRAGADLEKVYQEIKEKLSSDIVPMQKVGLAPNICETN 164 (237)
T ss_pred hCeEEEEEeCCCCCCHHHHHHHHHHHHcC--CCE-EEEEECccccCCCHHHHHHHHHHHHCCCeEEEECCcEeeeeeeee
Confidence 478999999998852 222333332 343 5899999975 233333221 122222211111110111110000
Q ss_pred hhHHHHHhhCCCchhHHHHHHHHhccHHHHHHHHHHHHhC-CcChHHHHHHHHHHHhcCc
Q 022952 87 PDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQKKIMSA-NFDFNDFLKQTRTVARMGS 145 (289)
Q Consensus 87 p~~la~rlLG~gDi~sLvEk~~~~~~~~~~~~~~~k~~~g-~F~l~Df~~Q~~~i~kmG~ 145 (289)
.--..|+|.+-+. | ++++++...| .++-+++++-++....-|.
T Consensus 165 -----------~~~~~l~e~vae~-d----d~l~e~yl~~~~~~~~el~~~l~~~~~~~~ 208 (237)
T cd04168 165 -----------EIDDEFWETLAEG-D----DELLEKYLEGGPIEELELDNELSARIAKRK 208 (237)
T ss_pred -----------eccHHHHHHHhcC-C----HHHHHHHhCCCCCCHHHHHHHHHHHHHhCC
Confidence 0115677776654 2 3477777775 8999999999988777763
No 36
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=66.66 E-value=7.2 Score=42.10 Aligned_cols=71 Identities=20% Similarity=0.100 Sum_probs=45.2
Q ss_pred hCCCeEEEEEeCcCcHHHHHHHHHhhhhcCCCeEEEecccCCCCCCcccc---ceeccCCCeEEEe--cCCCCCCC
Q 022952 12 LNPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAALS---VKEVSGKPIKLVG--RGERMEDL 82 (289)
Q Consensus 12 ~~P~ev~LVldAttgqda~~~a~~F~~~v~i~gvIlTKlDetargG~aLS---~~~~t~~PI~FIg--tGQkVdDL 82 (289)
..+|-+++|+||+.............+.=-+--+++||+|...+-|-... +....++|+..+. +|+.+++|
T Consensus 84 ~~aD~vI~VvDat~ler~l~l~~ql~e~giPvIvVlNK~Dl~~~~~i~id~~~L~~~LG~pVvpiSA~~g~GIdeL 159 (772)
T PRK09554 84 GDADLLINVVDASNLERNLYLTLQLLELGIPCIVALNMLDIAEKQNIRIDIDALSARLGCPVIPLVSTRGRGIEAL 159 (772)
T ss_pred cCCCEEEEEecCCcchhhHHHHHHHHHcCCCEEEEEEchhhhhccCcHHHHHHHHHHhCCCEEEEEeecCCCHHHH
Confidence 36899999999998773333222222211356889999999755553222 3456788987765 56666544
No 37
>PF08700 Vps51: Vps51/Vps67; InterPro: IPR014812 The VFT tethering complex (also known as GARP complex, Golgi associated retrograde protein complex, Vps53 tethering complex) is a conserved eukaryotic docking complex which is involved in recycling of proteins from endosomes to the late Golgi. Vps51 (also known as Vps67) is a subunit of VFT and interacts with the SNARE Tlg1 [].
Probab=64.84 E-value=59 Score=24.58 Aligned_cols=81 Identities=15% Similarity=0.291 Sum_probs=50.0
Q ss_pred CCCChhHHHHHhhCCCchhHHHHHHHHhccHHHHHHHHHHHHhC-CcChHHHHHHHHHHHhcCchHHHHhcCCCCCCCCc
Q 022952 83 EPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQKKIMSA-NFDFNDFLKQTRTVARMGSMSRVIGMIPGMGKITP 161 (289)
Q Consensus 83 e~f~p~~la~rlLG~gDi~sLvEk~~~~~~~~~~~~~~~k~~~g-~F~l~Df~~Q~~~i~kmG~l~~i~~miPG~~~~~~ 161 (289)
+.|+|+.++..+|.--.+..+.+..+... .+.......++.- --+++||+.--+.|.+|-.
T Consensus 4 ~~fd~~~~~~~~l~~~s~~~i~~~~~~L~--~~i~~~~~eLr~~V~~nY~~fI~as~~I~~m~~---------------- 65 (87)
T PF08700_consen 4 ENFDVDEYFKDLLKNSSIKEIRQLENKLR--QEIEEKDEELRKLVYENYRDFIEASDEISSMEN---------------- 65 (87)
T ss_pred CcCCHHHHHHHHHhhCCHHHHHHHHHHHH--HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH----------------
Confidence 67999999999998766555554444332 2233344444443 3578899998888876622
Q ss_pred hhhHHhHHHHHHHHHHHhCCC
Q 022952 162 AQVREAEKSLKIMEAMIEAMT 182 (289)
Q Consensus 162 ~~~~~~e~~~k~~~~Ii~SMT 182 (289)
.+......+..+...+++++
T Consensus 66 -~~~~l~~~l~~l~~~~~~l~ 85 (87)
T PF08700_consen 66 -DLSELRNLLSELQQSIQSLQ 85 (87)
T ss_pred -HHHHHHHHHHHHHHHHHHhh
Confidence 22333455666666666654
No 38
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=61.86 E-value=23 Score=30.41 Aligned_cols=38 Identities=29% Similarity=0.326 Sum_probs=27.4
Q ss_pred CCCeEEEEEeCcCcH-----HHHHHHHHhhhhcCCCeEEEecccCC
Q 022952 13 NPTEVLLVVDAMTGQ-----EAAALVTTFNIEIGITGAILTKLDGD 53 (289)
Q Consensus 13 ~P~ev~LVldAttgq-----da~~~a~~F~~~v~i~gvIlTKlDet 53 (289)
.+|-++||+||..|- +...++..++ ++ -=+++||+|..
T Consensus 93 ~~D~ailvVda~~g~~~~~~~~l~~~~~~~--~p-~ivvlNK~D~~ 135 (188)
T PF00009_consen 93 QADIAILVVDANDGIQPQTEEHLKILRELG--IP-IIVVLNKMDLI 135 (188)
T ss_dssp TSSEEEEEEETTTBSTHHHHHHHHHHHHTT---S-EEEEEETCTSS
T ss_pred ccccceeeeecccccccccccccccccccc--cc-eEEeeeeccch
Confidence 578899999999764 2334455544 45 67889999997
No 39
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=60.67 E-value=97 Score=28.30 Aligned_cols=30 Identities=17% Similarity=0.335 Sum_probs=23.6
Q ss_pred HHHHHHHHhC-CcChHHHHHHHHHHHhcCch
Q 022952 117 EEMQKKIMSA-NFDFNDFLKQTRTVARMGSM 146 (289)
Q Consensus 117 ~~~~~k~~~g-~F~l~Df~~Q~~~i~kmG~l 146 (289)
++++++...+ .++-+++...++....-|.+
T Consensus 210 d~l~e~yl~~~~~~~~~l~~~l~~~~~~~~~ 240 (268)
T cd04170 210 DELMEKYLEGGELTEEELHAGLRRALRAGLL 240 (268)
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHHhCCE
Confidence 4578887775 89999999999887776653
No 40
>PF07200 Mod_r: Modifier of rudimentary (Mod(r)) protein; InterPro: IPR009851 This entry represents a conserved region approximately 150 residues long within a number of eukaryotic proteins that show homology with Drosophila melanogaster Modifier of rudimentary (Mod(r)) proteins. The N-terminal half of Mod(r) proteins is acidic, whereas the C-terminal half is basic [], and both of these regions are represented in this family.; PDB: 2CAZ_F 2P22_C 2F66_F.
Probab=59.42 E-value=5.8 Score=33.52 Aligned_cols=45 Identities=22% Similarity=0.448 Sum_probs=31.0
Q ss_pred hHHHHHHHHhc--cHHHHHHHHHHHHhCCcChHHHHHHHHHHHhcCc
Q 022952 101 LSFVEKAQEVM--QQEDAEEMQKKIMSANFDFNDFLKQTRTVARMGS 145 (289)
Q Consensus 101 ~sLvEk~~~~~--~~~~~~~~~~k~~~g~F~l~Df~~Q~~~i~kmG~ 145 (289)
..|..+.+..+ .+++.+++++.+..|.-+++||++|+....+.-.
T Consensus 95 ~~l~~~L~~~~~e~eeeSe~lae~fl~g~~d~~~Fl~~f~~~R~~yH 141 (150)
T PF07200_consen 95 DALLARLQAAASEAEEESEELAEEFLDGEIDVDDFLKQFKEKRKLYH 141 (150)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHC-S-SSSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHH
Confidence 33444444433 2556788999999999999999999999876544
No 41
>PRK13587 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=59.28 E-value=28 Score=31.94 Aligned_cols=68 Identities=22% Similarity=0.335 Sum_probs=46.9
Q ss_pred HHHHHHHhCCCeEEEEEeCcCc------------HHHHHHHHHhhhhcCCCeEEEecccCCCCCCc-c----ccceeccC
Q 022952 5 LKDVKRVLNPTEVLLVVDAMTG------------QEAAALVTTFNIEIGITGAILTKLDGDSRGGA-A----LSVKEVSG 67 (289)
Q Consensus 5 Lk~i~~~~~P~ev~LVldAttg------------qda~~~a~~F~~~v~i~gvIlTKlDetargG~-a----LS~~~~t~ 67 (289)
++++.+.. |..+++.+|+--| .+..+.++.|.+ .++..+|+|=+|-+....| - -.++..++
T Consensus 115 l~~~~~~f-g~~ivvslD~~~g~v~~~gw~~~~~~~~~~~~~~~~~-~g~~~ii~tdi~~dGt~~G~~~~li~~l~~~~~ 192 (234)
T PRK13587 115 LKEMAHTF-PGRIYLSVDAYGEDIKVNGWEEDTELNLFSFVRQLSD-IPLGGIIYTDIAKDGKMSGPNFELTGQLVKATT 192 (234)
T ss_pred HHHHHHHc-CCCEEEEEEeeCCEEEecCCcccCCCCHHHHHHHHHH-cCCCEEEEecccCcCCCCccCHHHHHHHHHhCC
Confidence 44454444 5789999998544 356888999987 9999999999976443332 2 23345567
Q ss_pred CCeEEEe
Q 022952 68 KPIKLVG 74 (289)
Q Consensus 68 ~PI~FIg 74 (289)
.||.+-|
T Consensus 193 ipvi~~G 199 (234)
T PRK13587 193 IPVIASG 199 (234)
T ss_pred CCEEEeC
Confidence 8877766
No 42
>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma. eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.
Probab=58.88 E-value=13 Score=36.68 Aligned_cols=42 Identities=26% Similarity=0.239 Sum_probs=26.3
Q ss_pred hCCCeEEEEEeCcCcH---HHHHHHHHhhhhcCCC--eEEEecccCCC
Q 022952 12 LNPTEVLLVVDAMTGQ---EAAALVTTFNIEIGIT--GAILTKLDGDS 54 (289)
Q Consensus 12 ~~P~ev~LVldAttgq---da~~~a~~F~~~v~i~--gvIlTKlDeta 54 (289)
...|-++||+||+.|. ...+.+..+.. +++. -+++||+|...
T Consensus 102 ~~aD~aIlVVDa~~g~~~~qt~e~l~~l~~-~gi~~iIVvvNK~Dl~~ 148 (406)
T TIGR03680 102 ALMDGALLVIAANEPCPQPQTKEHLMALEI-IGIKNIVIVQNKIDLVS 148 (406)
T ss_pred HHCCEEEEEEECCCCccccchHHHHHHHHH-cCCCeEEEEEEccccCC
Confidence 3568899999999642 23333333332 4443 46799999753
No 43
>PF01972 SDH_sah: Serine dehydrogenase proteinase; InterPro: IPR002825 This family of archaebacterial proteins, formerly known as DUF114, has been found to be a serine dehydrogenase proteinase distantly related to ClpP proteinases that belong to the serine proteinase superfamily. The family belong to MEROPS peptidase family S49; they are mostly unassigned peptidases but include the archaean signal peptide peptidase 1 []. The family has a catalytic triad of Ser, Asp, His residues, which shows an altered residue ordering compared with the ClpP proteinases but similar to that of the carboxypeptidase clan []. ; GO: 0016021 integral to membrane
Probab=57.64 E-value=12 Score=36.12 Aligned_cols=124 Identities=15% Similarity=0.269 Sum_probs=71.8
Q ss_pred CeEEEEEeCcCcH-H-HHHHHHHhhhhcCCCeEEEecccCCCCCCccccceeccCCCeEEEecCCCCC----CCCCCChh
Q 022952 15 TEVLLVVDAMTGQ-E-AAALVTTFNIEIGITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGERME----DLEPFYPD 88 (289)
Q Consensus 15 ~ev~LVldAttgq-d-a~~~a~~F~~~v~i~gvIlTKlDetargG~aLS~~~~t~~PI~FIgtGQkVd----DLe~f~p~ 88 (289)
..+.|+++.--|. + |.++++..........+++. +.+-++|..+++.+. -.|++-+=.+- -+..+...
T Consensus 91 ~~IdLii~TpGG~v~AA~~I~~~l~~~~~~v~v~VP--~~A~SAGTlIALaAD----eIvM~p~a~LGpiDPqi~~~pA~ 164 (285)
T PF01972_consen 91 KPIDLIIHTPGGLVDAAEQIARALREHPAKVTVIVP--HYAMSAGTLIALAAD----EIVMGPGAVLGPIDPQIGQYPAA 164 (285)
T ss_pred CceEEEEECCCCcHHHHHHHHHHHHhCCCCEEEEEC--cccccHHHHHHHhCC----eEEECCCCccCCCCccccCCChH
Confidence 4589999999998 5 44678888775555555553 567777777665433 23333333321 12223333
Q ss_pred HHHHHhhC------------CCchhH---------HHHHHHHhccHHHHHHHHHHHHhCCcChHHHHHHHHHHHhcCc
Q 022952 89 RMAGRILG------------MGDVLS---------FVEKAQEVMQQEDAEEMQKKIMSANFDFNDFLKQTRTVARMGS 145 (289)
Q Consensus 89 ~la~rlLG------------~gDi~s---------LvEk~~~~~~~~~~~~~~~k~~~g~F~l~Df~~Q~~~i~kmG~ 145 (289)
.++..+-. +.|+.. +.|-.++.++++.++++++++.+|+|| .|+-=-.+..+++|-
T Consensus 165 sil~~~~~K~~~~i~D~tlIladia~KAi~q~~~~v~~lL~~~~~~eka~~ia~~L~~g~~t-Hdypi~~eea~~lGL 241 (285)
T PF01972_consen 165 SILKAVEQKPPDEIDDQTLILADIAEKAIRQVREFVKELLKDKMDEEKAEEIAEKLSSGKWT-HDYPITVEEAKELGL 241 (285)
T ss_pred HHHHHHHhccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHhcCCCCC-CCCCCCHHHHHHcCC
Confidence 33333321 123211 111112244688899999999999987 666666667777763
No 44
>COG1797 CobB Cobyrinic acid a,c-diamide synthase [Coenzyme metabolism]
Probab=57.39 E-value=7.5 Score=39.64 Aligned_cols=90 Identities=29% Similarity=0.349 Sum_probs=54.5
Q ss_pred CeEEEEEeCcCcH-HHHHHHH---HhhhhcCCCeEEEecccCCCCCCccccceeccCCCeEEEecCCCCCCCCCCChhHH
Q 022952 15 TEVLLVVDAMTGQ-EAAALVT---TFNIEIGITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGERMEDLEPFYPDRM 90 (289)
Q Consensus 15 ~ev~LVldAttgq-da~~~a~---~F~~~v~i~gvIlTKlDetargG~aLS~~~~t~~PI~FIgtGQkVdDLe~f~p~~l 90 (289)
.-|+||||+..-. .+..++. .|.+.++|.|||++++=+..-..-+=.+... .++|..+|.=.+=+|++..
T Consensus 112 ~PVvLVid~~~~s~S~AAiv~G~~~fdp~v~iaGVIlNrVgserH~~llr~Ale~-~~gv~vlG~lpr~~~l~lp----- 185 (451)
T COG1797 112 APVVLVVDASGLSRSVAAIVKGFKHFDPDVNIAGVILNRVGSERHYELLRDALEE-YTGVPVLGYLPRDDDLELP----- 185 (451)
T ss_pred CCEEEEEeCcchhHHHHHHHHHHHhcCCCCceEEEEEecCCCHHHHHHHHHHhhh-cCCCcEEEEecCCcccCCc-----
Confidence 4699999998776 5556654 5555678999999998665444433344433 2335556654455555543
Q ss_pred HHHhhCC------CchhHHHHHHHHhc
Q 022952 91 AGRILGM------GDVLSFVEKAQEVM 111 (289)
Q Consensus 91 a~rlLG~------gDi~sLvEk~~~~~ 111 (289)
+|=||. .++...+|.+.+++
T Consensus 186 -~RHLGLV~a~E~~~~~~~~~~~a~~v 211 (451)
T COG1797 186 -SRHLGLVPASERLELEAKLEALAEVV 211 (451)
T ss_pred -ccccccccchhhhhHHHHHHHHHHHH
Confidence 344553 35555555555443
No 45
>PF06858 NOG1: Nucleolar GTP-binding protein 1 (NOG1); InterPro: IPR010674 This domain represents a conserved region of approximately 60 residues in length within nucleolar GTP-binding protein 1 (NOG1). The NOG1 family includes eukaryotic, bacterial and archaeal proteins. In Saccharomyces cerevisiae, the NOG1 gene has been shown to be essential for cell viability, suggesting that NOG1 may play an important role in nucleolar functions. In particular, NOG1 is believed to be functionally linked to ribosome biogenesis, which occurs in the nucleolus. In eukaryotes, NOG1 mutants were found to disrupt the biogenesis of the 60S ribosomal subunit []. The DRG and OBG proteins as well as the prokaryotic NOG-like proteins are homologous throughout their length to the amino half of eukaryotic NOG1, which contains the GTP binding motifs (IPR006073 from INTERPRO); the N-terminal GTP-binding motif is required for function.; GO: 0005525 GTP binding; PDB: 2E87_A.
Probab=56.74 E-value=29 Score=25.91 Aligned_cols=48 Identities=15% Similarity=0.257 Sum_probs=26.6
Q ss_pred HHHHHHHHh-CCCeEEEEEeCcCcH--HHHHHHHHhhh---hc--CCCeEEEeccc
Q 022952 4 ELKDVKRVL-NPTEVLLVVDAMTGQ--EAAALVTTFNI---EI--GITGAILTKLD 51 (289)
Q Consensus 4 ELk~i~~~~-~P~ev~LVldAttgq--da~~~a~~F~~---~v--~i~gvIlTKlD 51 (289)
|++++..-. =++-|+|++|.+-.. ...+|..-|++ .+ .+==+|++|+|
T Consensus 3 E~qai~AL~hL~~~ilfi~D~Se~CGysie~Q~~L~~~ik~~F~~~P~i~V~nK~D 58 (58)
T PF06858_consen 3 EMQAITALAHLADAILFIIDPSEQCGYSIEEQLSLFKEIKPLFPNKPVIVVLNKID 58 (58)
T ss_dssp HHHHHHGGGGT-SEEEEEE-TT-TTSS-HHHHHHHHHHHHHHTTTS-EEEEE--TT
T ss_pred hHHHHHHHHhhcceEEEEEcCCCCCCCCHHHHHHHHHHHHHHcCCCCEEEEEeccC
Confidence 555555443 378899999998654 66677766664 12 23357888887
No 46
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=56.70 E-value=19 Score=27.84 Aligned_cols=44 Identities=18% Similarity=0.076 Sum_probs=29.3
Q ss_pred hCCCeEEEEEeCcCcHHHHHH--HHHhhhhcCCCeEEEecccCCCC
Q 022952 12 LNPTEVLLVVDAMTGQEAAAL--VTTFNIEIGITGAILTKLDGDSR 55 (289)
Q Consensus 12 ~~P~ev~LVldAttgqda~~~--a~~F~~~v~i~gvIlTKlDetar 55 (289)
..++-+++|+|+.....-... ...+...-...-+++||+|....
T Consensus 74 ~~~d~il~v~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~ 119 (163)
T cd00880 74 ERADLILFVVDADLRADEEEEKLLELLRERGKPVLLVLNKIDLLPE 119 (163)
T ss_pred HhCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCeEEEEEEccccCCh
Confidence 467899999999998732222 33333223445789999998654
No 47
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=56.50 E-value=47 Score=31.06 Aligned_cols=29 Identities=10% Similarity=0.164 Sum_probs=23.7
Q ss_pred HHHHHHHHhC-CcChHHHHHHHHHHHhcCc
Q 022952 117 EEMQKKIMSA-NFDFNDFLKQTRTVARMGS 145 (289)
Q Consensus 117 ~~~~~k~~~g-~F~l~Df~~Q~~~i~kmG~ 145 (289)
+++++|...| .++-+++++.++.-..-|.
T Consensus 212 d~L~e~yl~~~~~~~~el~~~l~~~~~~~~ 241 (270)
T cd01886 212 DELMEKYLEGEEITEEEIKAAIRKGTIANK 241 (270)
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHHcCc
Confidence 4588888876 7999999999998777764
No 48
>PF01418 HTH_6: Helix-turn-helix domain, rpiR family; InterPro: IPR000281 This domain contains a helix-turn-helix motif []. Every member of this family is N-terminal to a SIS domain IPR001347 from INTERPRO. Members of this family are probably regulators of genes involved in phosphosugar metobolism.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2O3F_B 3IWF_B.
Probab=56.46 E-value=13 Score=28.13 Aligned_cols=47 Identities=17% Similarity=0.416 Sum_probs=32.9
Q ss_pred HHHHHHHHhCCCHHhh-------cCccccCCCchhhHHhhccCCCCHHHHHHHHHH
Q 022952 171 LKIMEAMIEAMTPEER-------EKPELLAESPVRRKRVAQDSGKTEQQVSQLVAQ 219 (289)
Q Consensus 171 ~k~~~~Ii~SMT~~Er-------~nP~li~~~~SR~~RIA~GSG~~~~eVn~Llk~ 219 (289)
+.++....++||+.|+ +||+-+.. .-+.-||+-+|+++.-|.++.+.
T Consensus 4 ~~~i~~~~~~ls~~e~~Ia~yil~~~~~~~~--~si~elA~~~~vS~sti~Rf~kk 57 (77)
T PF01418_consen 4 LEKIRSQYNSLSPTEKKIADYILENPDEIAF--MSISELAEKAGVSPSTIVRFCKK 57 (77)
T ss_dssp HHHHHHHGGGS-HHHHHHHHHHHH-HHHHCT----HHHHHHHCTS-HHHHHHHHHH
T ss_pred HHHHHHHHhhCCHHHHHHHHHHHhCHHHHHH--ccHHHHHHHcCCCHHHHHHHHHH
Confidence 4466667778888887 48865542 46899999999999999988875
No 49
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=55.40 E-value=30 Score=27.30 Aligned_cols=42 Identities=21% Similarity=0.142 Sum_probs=26.5
Q ss_pred hCCCeEEEEEeCcCc--HHHHHHHHHhhhhcCCCeEEEecccCC
Q 022952 12 LNPTEVLLVVDAMTG--QEAAALVTTFNIEIGITGAILTKLDGD 53 (289)
Q Consensus 12 ~~P~ev~LVldAttg--qda~~~a~~F~~~v~i~gvIlTKlDet 53 (289)
...+-+++|+|++.. +....+.+.+...=.+.-+|+||+|..
T Consensus 81 ~~~d~i~~v~d~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~ 124 (168)
T cd04163 81 KDVDLVLFVVDASEPIGEGDEFILELLKKSKTPVILVLNKIDLV 124 (168)
T ss_pred HhCCEEEEEEECCCccCchHHHHHHHHHHhCCCEEEEEEchhcc
Confidence 356789999999875 232333343333113557889999985
No 50
>cd04130 Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,
Probab=55.21 E-value=15 Score=30.64 Aligned_cols=44 Identities=11% Similarity=0.069 Sum_probs=26.9
Q ss_pred CCCeEEEEEeCcCcHHHHHH----HHHhh---hhcCCCeEEEecccCCCCCC
Q 022952 13 NPTEVLLVVDAMTGQEAAAL----VTTFN---IEIGITGAILTKLDGDSRGG 57 (289)
Q Consensus 13 ~P~ev~LVldAttgqda~~~----a~~F~---~~v~i~gvIlTKlDetargG 57 (289)
+.+-+++|.|.+......++ ...+. ..+++ -+|.||.|.....+
T Consensus 71 ~a~~~i~v~d~~~~~sf~~~~~~~~~~~~~~~~~~pi-ilv~nK~Dl~~~~~ 121 (173)
T cd04130 71 DTDVFLLCFSVVNPSSFQNISEKWIPEIRKHNPKAPI-ILVGTQADLRTDVN 121 (173)
T ss_pred CCcEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCE-EEEeeChhhccChh
Confidence 45778899999876432222 22222 22333 79999999876554
No 51
>cd03556 L-fucose_isomerase L-fucose isomerase (FucIase); FucIase converts L-fucose, an aldohexose, to its ketose form, which prepares it for aldol cleavage (similar to the isomerization of glucose during glycolysis). L-fucose (or 6-deoxy-L-galactose) is found in blood group determinants as well as in various oligo- and polysaccharides, and glycosides in mammals, bacteria and plants.
Probab=54.15 E-value=1.3e+02 Score=31.98 Aligned_cols=75 Identities=25% Similarity=0.399 Sum_probs=49.9
Q ss_pred EEEeCcCcH--HHHHHHHHhhhhcCCCeEEE----------------------ecccCCCCCCcc-----ccceeccCCC
Q 022952 19 LVVDAMTGQ--EAAALVTTFNIEIGITGAIL----------------------TKLDGDSRGGAA-----LSVKEVSGKP 69 (289)
Q Consensus 19 LVldAttgq--da~~~a~~F~~~v~i~gvIl----------------------TKlDetargG~a-----LS~~~~t~~P 69 (289)
.+-|.++|- +|...++.|.. -+++++|+ .=.+++.++|.+ +.+....|+|
T Consensus 50 viad~~i~~~aeA~~~a~kf~~-~~Vd~tI~vtpcWcygset~dm~~~~P~alWgfn~perpGaVyLaA~lAahaQ~Glp 128 (584)
T cd03556 50 VIADTTIGRVAEAAACAEKFTR-ENVGATITVTPCWCYGSETMDMDPNTPKAIWGFNGTERPGAVYLAAVLAGHAQKGIP 128 (584)
T ss_pred EecccccCCHHHHHHHHHHHhh-cCCCEEEEecceecCcHHHHhhcccCCEEEEcCCCCCCCchHHHHhhhhHHhhCCCC
Confidence 445666665 77778888886 77777664 456788887653 3445678899
Q ss_pred eEEEecCCCCCCCCCCC-hhHHHHHhh
Q 022952 70 IKLVGRGERMEDLEPFY-PDRMAGRIL 95 (289)
Q Consensus 70 I~FIgtGQkVdDLe~f~-p~~la~rlL 95 (289)
.|---|..|+|...-+ |+.+...||
T Consensus 129 -~f~IyG~~vqd~~d~~iP~DV~eKll 154 (584)
T cd03556 129 -AFGIYGHDVQEADDTTIPEDVKEKIL 154 (584)
T ss_pred -ceEEecCCccccccccCcHHHHHHHH
Confidence 4445588887776665 555555444
No 52
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=53.77 E-value=22 Score=29.17 Aligned_cols=69 Identities=12% Similarity=0.074 Sum_probs=37.4
Q ss_pred CCCeEEEEEeCcCcHHHHH---HHHHhhhhc---CCCeEEEecccCCCCCCc----cccceeccCCCeEEEe--cCCCCC
Q 022952 13 NPTEVLLVVDAMTGQEAAA---LVTTFNIEI---GITGAILTKLDGDSRGGA----ALSVKEVSGKPIKLVG--RGERME 80 (289)
Q Consensus 13 ~P~ev~LVldAttgqda~~---~a~~F~~~v---~i~gvIlTKlDetargG~----aLS~~~~t~~PI~FIg--tGQkVd 80 (289)
..+-++||+|++......+ ......... .+--+|.||.|....-.- +.......+.|+..+. +|+.|+
T Consensus 74 ~~~~ii~v~d~~~~~s~~~l~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~ 153 (166)
T cd01869 74 GAHGIIIVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTDKRVVDYSEAQEFADELGIPFLETSAKNATNVE 153 (166)
T ss_pred cCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEEChhcccccCCCHHHHHHHHHHcCCeEEEEECCCCcCHH
Confidence 4678999999988653222 222222211 133578899997432111 2223344567766665 556555
Q ss_pred C
Q 022952 81 D 81 (289)
Q Consensus 81 D 81 (289)
+
T Consensus 154 ~ 154 (166)
T cd01869 154 Q 154 (166)
T ss_pred H
Confidence 4
No 53
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=52.98 E-value=32 Score=30.46 Aligned_cols=40 Identities=23% Similarity=0.246 Sum_probs=25.7
Q ss_pred CCCeEEEEEeCcCcH--HHHHHHHHhhhhcCCC-e-EEEecccCC
Q 022952 13 NPTEVLLVVDAMTGQ--EAAALVTTFNIEIGIT-G-AILTKLDGD 53 (289)
Q Consensus 13 ~P~ev~LVldAttgq--da~~~a~~F~~~v~i~-g-vIlTKlDet 53 (289)
..|-++||+||..|- ...+.+..... .++. - +++||+|.-
T Consensus 88 ~~D~~ilVvda~~g~~~~~~~~~~~~~~-~~~~~iIvviNK~D~~ 131 (195)
T cd01884 88 QMDGAILVVSATDGPMPQTREHLLLARQ-VGVPYIVVFLNKADMV 131 (195)
T ss_pred hCCEEEEEEECCCCCcHHHHHHHHHHHH-cCCCcEEEEEeCCCCC
Confidence 467899999998873 23333333332 5554 3 568999984
No 54
>PF08671 SinI: Anti-repressor SinI; InterPro: IPR010981 The SinR repressor is part of a group of Sin (sporulation inhibition) proteins in Bacillus subtilis that regulate the commitment to sporulation in response to extreme adversity []. SinR is a tetrameric repressor protein that binds to the promoters of genes essential for entry into sporulation and prevents their transcription. This repression is overcome through the activity of SinI, which disrupts the SinR tetramer through the formation of a SinI-SinR heterodimer, thereby allowing sporulation to proceed. The SinR structure consists of two domains: a dimerisation domain stabilised by a hydrophobic core, and a DNA-binding domain that is identical to domains of the bacteriophage 434 CI and Cro proteins that regulate prophage induction. The dimerisation domain is a four-helical bundle formed from two helices from the C-terminal residues of SinR and two helices from the central residues of SinI. These regions in SinR and SinI are similar in both structure and sequence. The interaction of SinR monomers to form tetramers is weaker than between SinR and SinI, since SinI can effectively disrupt SinR tetramers. This entry represents the dimerisation domain in both SinI and SinR proteins.; GO: 0005488 binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1B0N_A 2YAL_A.
Probab=50.02 E-value=14 Score=24.04 Aligned_cols=20 Identities=15% Similarity=0.400 Sum_probs=14.6
Q ss_pred HHhhccCCCCHHHHHHHHHH
Q 022952 200 KRVAQDSGKTEQQVSQLVAQ 219 (289)
Q Consensus 200 ~RIA~GSG~~~~eVn~Llk~ 219 (289)
..=|+.+|.|++||.++|+.
T Consensus 9 i~eA~~~Gls~eeir~FL~~ 28 (30)
T PF08671_consen 9 IKEAKESGLSKEEIREFLEF 28 (30)
T ss_dssp HHHHHHTT--HHHHHHHHHH
T ss_pred HHHHHHcCCCHHHHHHHHHh
Confidence 34589999999999988864
No 55
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=49.95 E-value=62 Score=27.73 Aligned_cols=61 Identities=16% Similarity=0.129 Sum_probs=34.5
Q ss_pred hCCCeEEEEEeCcCcH---HHHHHHHHhhhhcC----CCeEEEecccCCCCCCccccceeccCCCeEEEe
Q 022952 12 LNPTEVLLVVDAMTGQ---EAAALVTTFNIEIG----ITGAILTKLDGDSRGGAALSVKEVSGKPIKLVG 74 (289)
Q Consensus 12 ~~P~ev~LVldAttgq---da~~~a~~F~~~v~----i~gvIlTKlDetargG~aLS~~~~t~~PI~FIg 74 (289)
...+-+++|+|++... +.....+.+.. ++ +--+|+||+|....-... ......+.|+.+++
T Consensus 119 ~~~d~ii~v~D~~~~~~~~~~~~~~~~l~~-~~~~~~~viiV~NK~Dl~~~~~~~-~~~~~~~~~~~~~S 186 (204)
T cd01878 119 AEADLLLHVVDASDPDYEEQIETVEKVLKE-LGAEDIPMILVLNKIDLLDDEELE-ERLEAGRPDAVFIS 186 (204)
T ss_pred hcCCeEEEEEECCCCChhhHHHHHHHHHHH-cCcCCCCEEEEEEccccCChHHHH-HHhhcCCCceEEEE
Confidence 4678899999998764 22222333433 32 337899999985433211 11223345666655
No 56
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=49.56 E-value=71 Score=25.19 Aligned_cols=58 Identities=24% Similarity=0.219 Sum_probs=33.4
Q ss_pred hCCCeEEEEEeCcCcH--HHHHHHHHhhhhcCCCeEEEecccCCCCCCccccceeccCCCeEEEe
Q 022952 12 LNPTEVLLVVDAMTGQ--EAAALVTTFNIEIGITGAILTKLDGDSRGGAALSVKEVSGKPIKLVG 74 (289)
Q Consensus 12 ~~P~ev~LVldAttgq--da~~~a~~F~~~v~i~gvIlTKlDetargG~aLS~~~~t~~PI~FIg 74 (289)
.+.+-+++|+|++... .-........ -..--+|+||+|....-.. .......|+.+++
T Consensus 79 ~~~~~~v~v~d~~~~~~~~~~~~~~~~~--~~~vi~v~nK~D~~~~~~~---~~~~~~~~~~~~S 138 (157)
T cd04164 79 EEADLVLFVIDASRGLDEEDLEILELPA--DKPIIVVLNKSDLLPDSEL---LSLLAGKPIIAIS 138 (157)
T ss_pred hhCCEEEEEEECCCCCCHHHHHHHHhhc--CCCEEEEEEchhcCCcccc---ccccCCCceEEEE
Confidence 4678999999999544 2222222211 2345899999998543322 2233344555554
No 57
>TIGR01919 hisA-trpF 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase/N-(5'phosphoribosyl)anthranilate isomerase. This model represents a bifunctional protein posessing both hisA (1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase) and trpF (N-(5'phosphoribosyl)anthranilate isomerase) activities. Thus, it is involved in both the histidine and tryptophan biosynthetic pathways. Enzymes with this property have been described only in the Actinobacteria (High-GC gram-positive). The enzyme is closely related to the monofunctional HisA proteins (TIGR00007) and in Actinobacteria, the classical monofunctional TrpF is generally absent.
Probab=49.02 E-value=32 Score=31.87 Aligned_cols=69 Identities=17% Similarity=0.230 Sum_probs=50.8
Q ss_pred CCeEEEEEeCc---------------CcHHHHHHHHHhhhhcCCCeEEEecccCCCCCCcc-----ccceeccCCCeEEE
Q 022952 14 PTEVLLVVDAM---------------TGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAA-----LSVKEVSGKPIKLV 73 (289)
Q Consensus 14 P~ev~LVldAt---------------tgqda~~~a~~F~~~v~i~gvIlTKlDetargG~a-----LS~~~~t~~PI~FI 73 (289)
+.++++.+|+- ++.+..+.++.|.+ .++..+|+|=+|-+-...|. =.++..++.||.+-
T Consensus 121 g~~ivvslD~k~~g~~~~v~~~Gw~~~~~~~~~~~~~~~~-~g~~~ii~tdI~~dGt~~G~d~~l~~~l~~~~~~pvias 199 (243)
T TIGR01919 121 GDIVAVGLDVLEDGEWHTLGNRGWSDGGGDLEVLERLLDS-GGCSRVVVTDSKKDGLSGGPNELLLEVVAARTDAIVAAS 199 (243)
T ss_pred cccEEEEEEEecCCceEEEECCCeecCCCcHHHHHHHHHh-CCCCEEEEEecCCcccCCCcCHHHHHHHHhhCCCCEEEE
Confidence 56788888875 33367788999987 99999999999998777664 23344568898888
Q ss_pred ecCCCCCCCC
Q 022952 74 GRGERMEDLE 83 (289)
Q Consensus 74 gtGQkVdDLe 83 (289)
|-=-+++||+
T Consensus 200 GGv~s~eDl~ 209 (243)
T TIGR01919 200 GGSSLLDDLR 209 (243)
T ss_pred CCcCCHHHHH
Confidence 7444446665
No 58
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=48.99 E-value=45 Score=30.18 Aligned_cols=38 Identities=32% Similarity=0.395 Sum_probs=25.9
Q ss_pred CCCeEEEEEeCcCcH---H--HHHHHHHhhhhcCCCeEEEecccCC
Q 022952 13 NPTEVLLVVDAMTGQ---E--AAALVTTFNIEIGITGAILTKLDGD 53 (289)
Q Consensus 13 ~P~ev~LVldAttgq---d--a~~~a~~F~~~v~i~gvIlTKlDet 53 (289)
.+|-++||+||..|. + ....+.... +++ -+|+||+|..
T Consensus 109 ~~D~~llVvda~~g~~~~d~~~l~~l~~~~--ip~-ivvvNK~D~~ 151 (224)
T cd04165 109 APDYAMLVVAANAGIIGMTKEHLGLALALN--IPV-FVVVTKIDLA 151 (224)
T ss_pred CCCEEEEEEECCCCCcHHHHHHHHHHHHcC--CCE-EEEEECcccc
Confidence 578899999998763 2 233344433 453 6889999974
No 59
>TIGR00485 EF-Tu translation elongation factor TU. This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=48.73 E-value=34 Score=33.45 Aligned_cols=41 Identities=22% Similarity=0.235 Sum_probs=27.4
Q ss_pred hCCCeEEEEEeCcCcH--HHHHHHHHhhhhcCCCeE--EEecccCC
Q 022952 12 LNPTEVLLVVDAMTGQ--EAAALVTTFNIEIGITGA--ILTKLDGD 53 (289)
Q Consensus 12 ~~P~ev~LVldAttgq--da~~~a~~F~~~v~i~gv--IlTKlDet 53 (289)
...|-++||+||..|. ...+.+..... .++.-+ ++||+|..
T Consensus 97 ~~~D~~ilVvda~~g~~~qt~e~l~~~~~-~gi~~iIvvvNK~Dl~ 141 (394)
T TIGR00485 97 AQMDGAILVVSATDGPMPQTREHILLARQ-VGVPYIVVFLNKCDMV 141 (394)
T ss_pred hhCCEEEEEEECCCCCcHHHHHHHHHHHH-cCCCEEEEEEEecccC
Confidence 4578899999999863 33344444333 566654 58999974
No 60
>COG3688 Predicted RNA-binding protein containing a PIN domain [General function prediction only]
Probab=48.68 E-value=14 Score=33.17 Aligned_cols=86 Identities=19% Similarity=0.205 Sum_probs=51.4
Q ss_pred ChHHHHHHHHHhCCCeEEEEEeCcCcHHHHHHHHHhhhhcCCCeEEEecccCCCC-----CCccccceeccCCCeEEEec
Q 022952 1 MMDELKDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSR-----GGAALSVKEVSGKPIKLVGR 75 (289)
Q Consensus 1 Lm~ELk~i~~~~~P~ev~LVldAttgqda~~~a~~F~~~v~i~gvIlTKlDetar-----gG~aLS~~~~t~~PI~FIgt 75 (289)
|++.|..+.... ..+|..|.||-.-+-+- +.+.. .-=.+|+||.|||+. .-+-|. ....--.+|+|
T Consensus 36 LIe~l~~Y~s~~-g~~iivVFDA~~v~g~~---~~~~~--~~vsvvyT~~~ETADs~IEr~~~el~---~~~t~~V~VaT 106 (173)
T COG3688 36 LIEALAEYQSFT-GYKIIVVFDAHYVPGVG---REYKN--HRVSVVYTKEGETADSFIERYVAELR---NAATHQVIVAT 106 (173)
T ss_pred HHHHHHHhhccc-CceEEEEEEcccccccc---ccccc--cceEEEEecCCccHHHHHHHHHHHHh---ccccceEEEEe
Confidence 456666666654 48999999998777522 23332 235799999999974 233333 11222456777
Q ss_pred CCCCCCCCCCC--hhHHHHHhh
Q 022952 76 GERMEDLEPFY--PDRMAGRIL 95 (289)
Q Consensus 76 GQkVdDLe~f~--p~~la~rlL 95 (289)
--.-+....|. +.|+.++-|
T Consensus 107 SD~~EQ~~Ifg~GA~r~Sarel 128 (173)
T COG3688 107 SDRAEQWTIFGQGALRMSAREL 128 (173)
T ss_pred CchhhhhhhhccchHHHhHHHH
Confidence 66666555554 445555544
No 61
>TIGR03637 cas1_YPEST CRISPR-associated endonuclease Cas1, YPEST subtype. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 protein particular to the YPEST subtype of CRISPR/Cas system.
Probab=47.79 E-value=37 Score=32.83 Aligned_cols=59 Identities=12% Similarity=0.126 Sum_probs=43.9
Q ss_pred ccccceeccCCCeEEEecCCCC--CC------------CCCCChhHHHHHhhCCCchhHHHHHHHHhccHHHHHHHHHHH
Q 022952 58 AALSVKEVSGKPIKLVGRGERM--ED------------LEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQKKI 123 (289)
Q Consensus 58 ~aLS~~~~t~~PI~FIgtGQkV--dD------------Le~f~p~~la~rlLG~gDi~sLvEk~~~~~~~~~~~~~~~k~ 123 (289)
.|+......|+||.|++.|-.. .- ...|.|.+. ++..++...+++..-.++++|
T Consensus 58 ~al~~L~~~gI~V~f~~~~G~~~y~~~~~~~~~~~~~~~~~~~p~~~------------~~~Qa~~~~d~~~RL~iAr~~ 125 (307)
T TIGR03637 58 AAMRELAKAGVMVGFCGGGGTPLFSANEVEVDVSWLSPQSEYRPTEY------------LQAWMKFWFDDDKRLAAAKAF 125 (307)
T ss_pred HHHHHHHHCCCEEEEECCCCEeecccccccccccccCCCCccccHHH------------HHHHHHHhcCHHHHHHHHHHH
Confidence 5788899999999999988862 11 224555433 366677777888888899999
Q ss_pred HhCCc
Q 022952 124 MSANF 128 (289)
Q Consensus 124 ~~g~F 128 (289)
-.++|
T Consensus 126 v~~~~ 130 (307)
T TIGR03637 126 QLIRI 130 (307)
T ss_pred HHHHH
Confidence 99887
No 62
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=47.62 E-value=39 Score=29.72 Aligned_cols=43 Identities=23% Similarity=0.220 Sum_probs=25.3
Q ss_pred hCCCeEEEEEeCcCcH-HHHHHHHHhhhhcCCCe-E-EEecccCCC
Q 022952 12 LNPTEVLLVVDAMTGQ-EAAALVTTFNIEIGITG-A-ILTKLDGDS 54 (289)
Q Consensus 12 ~~P~ev~LVldAttgq-da~~~a~~F~~~v~i~g-v-IlTKlDeta 54 (289)
...+-++||+|++.+. +.......+....+... + |+||+|...
T Consensus 99 ~~ad~~llVvD~~~~~~~~~~~~~~~~~~~~~~~iIvviNK~D~~~ 144 (208)
T cd04166 99 STADLAILLVDARKGVLEQTRRHSYILSLLGIRHVVVAVNKMDLVD 144 (208)
T ss_pred hhCCEEEEEEECCCCccHhHHHHHHHHHHcCCCcEEEEEEchhccc
Confidence 3578899999999875 21111122222244332 3 589999853
No 63
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=47.15 E-value=39 Score=32.90 Aligned_cols=44 Identities=27% Similarity=0.197 Sum_probs=25.9
Q ss_pred HhCCCeEEEEEeCcCcH--HHHHHHHHhhhhcC----CCeEEEecccCCC
Q 022952 11 VLNPTEVLLVVDAMTGQ--EAAALVTTFNIEIG----ITGAILTKLDGDS 54 (289)
Q Consensus 11 ~~~P~ev~LVldAttgq--da~~~a~~F~~~v~----i~gvIlTKlDeta 54 (289)
+.+.|-+++|+|++... +-.+....+-..++ +--+|+||+|-..
T Consensus 266 ~~~ADlil~VvD~s~~~~~~~~~~~~~~L~~l~~~~~piIlV~NK~Dl~~ 315 (351)
T TIGR03156 266 VREADLLLHVVDASDPDREEQIEAVEKVLEELGAEDIPQLLVYNKIDLLD 315 (351)
T ss_pred HHhCCEEEEEEECCCCchHHHHHHHHHHHHHhccCCCCEEEEEEeecCCC
Confidence 34568899999998764 22211112211122 3368999999753
No 64
>TIGR03449 mycothiol_MshA UDP-N-acetylglucosamine: 1L-myo-inositol-1-phosphate 1-alpha-D-N-acetylglucosaminyltransferase. Members of this protein family, found exclusively in the Actinobacteria, are MshA, the glycosyltransferase of mycothiol biosynthesis. Mycothiol replaces glutathione in these species.
Probab=46.98 E-value=2e+02 Score=27.03 Aligned_cols=93 Identities=10% Similarity=0.086 Sum_probs=55.0
Q ss_pred CeEEEecccCCCCCCccccceeccCCCeEEEecCCCCCCCCCCChhHHHHHhhCCCchhHHHHHHHHhccH-HHHHHHHH
Q 022952 43 TGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQ-EDAEEMQK 121 (289)
Q Consensus 43 ~gvIlTKlDetargG~aLS~~~~t~~PI~FIgtGQkVdDLe~f~p~~la~rlLG~gDi~sLvEk~~~~~~~-~~~~~~~~ 121 (289)
|-+|++-..| ..|.++-=....|+||....+|.-.+-++.... ..+...+|+..|.+.+...++. +..+++.+
T Consensus 304 d~~v~ps~~E--~~g~~~lEAma~G~Pvi~~~~~~~~e~i~~~~~----g~~~~~~d~~~la~~i~~~l~~~~~~~~~~~ 377 (405)
T TIGR03449 304 DVVAVPSYNE--SFGLVAMEAQACGTPVVAARVGGLPVAVADGET----GLLVDGHDPADWADALARLLDDPRTRIRMGA 377 (405)
T ss_pred CEEEECCCCC--CcChHHHHHHHcCCCEEEecCCCcHhhhccCCc----eEECCCCCHHHHHHHHHHHHhCHHHHHHHHH
Confidence 4566664443 345556666678999988776642232322211 2233457888888888877642 22333333
Q ss_pred HHHh--CCcChHHHHHHHHHHH
Q 022952 122 KIMS--ANFDFNDFLKQTRTVA 141 (289)
Q Consensus 122 k~~~--g~F~l~Df~~Q~~~i~ 141 (289)
...+ .+|+.+.+.+++..+-
T Consensus 378 ~~~~~~~~fsw~~~~~~~~~~y 399 (405)
T TIGR03449 378 AAVEHAAGFSWAATADGLLSSY 399 (405)
T ss_pred HHHHHHHhCCHHHHHHHHHHHH
Confidence 2221 3699999988887765
No 65
>COG4566 TtrR Response regulator [Signal transduction mechanisms]
Probab=46.92 E-value=2.1e+02 Score=26.48 Aligned_cols=102 Identities=22% Similarity=0.307 Sum_probs=69.2
Q ss_pred ccCCCeEEEecCCCCCCCCCCChhHHHHHhhCCCchhHHHHHHHHhccHHHHHHHHHHHHhCCcChHHHHHHHHHHHhcC
Q 022952 65 VSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQKKIMSANFDFNDFLKQTRTVARMG 144 (289)
Q Consensus 65 ~t~~PI~FIgtGQkVdDLe~f~p~~la~rlLG~gDi~sLvEk~~~~~~~~~~~~~~~k~~~g~F~l~Df~~Q~~~i~kmG 144 (289)
...+||.|+| |.|||---|+..+.= +-.+.+--|+..++++-++.-..-
T Consensus 74 ~~~~PVIfiT---------------------GhgDIpmaV~AmK~G---------AvDFLeKP~~~q~Lldav~~Al~~- 122 (202)
T COG4566 74 GIRLPVIFLT---------------------GHGDIPMAVQAMKAG---------AVDFLEKPFSEQDLLDAVERALAR- 122 (202)
T ss_pred CCCCCEEEEe---------------------CCCChHHHHHHHHcc---------hhhHHhCCCchHHHHHHHHHHHHH-
Confidence 4578999988 889998888766542 223445578888999888774311
Q ss_pred chHHHHhcCCCCCCCCchhhHHhHHHHHHHHHHHhCCCHHhhcCccccCCCchhhHHhhccCCCCHHHHH
Q 022952 145 SMSRVIGMIPGMGKITPAQVREAEKSLKIMEAMIEAMTPEEREKPELLAESPVRRKRVAQDSGKTEQQVS 214 (289)
Q Consensus 145 ~l~~i~~miPG~~~~~~~~~~~~e~~~k~~~~Ii~SMT~~Er~nP~li~~~~SR~~RIA~GSG~~~~eVn 214 (289)
...-......-..+.+-+.++|+.||+=-+.+.. .-.=+-||..=|.++.-|.
T Consensus 123 ----------------~~~~~~~~~~~~~~~~~l~tLT~RERqVl~~vV~-G~~NKqIA~dLgiS~rTVe 175 (202)
T COG4566 123 ----------------DASRRAEADRQAAIRARLATLTPRERQVLDLVVR-GLMNKQIAFDLGISERTVE 175 (202)
T ss_pred ----------------HHHHHHhHHHHHHHHHHHHhcCHHHHHHHHHHHc-CcccHHHHHHcCCchhhHH
Confidence 0111122345678899999999999985433321 1234679999999999887
No 66
>PTZ00062 glutaredoxin; Provisional
Probab=46.43 E-value=1.5e+02 Score=26.97 Aligned_cols=83 Identities=10% Similarity=0.074 Sum_probs=51.9
Q ss_pred HHHHHHHHHhCCCeEEEEEeCcCcH--HHHHHHHHhhhhcCCCeEEEecccCCCCCCccccceeccCCC-eEEEecCCCC
Q 022952 3 DELKDVKRVLNPTEVLLVVDAMTGQ--EAAALVTTFNIEIGITGAILTKLDGDSRGGAALSVKEVSGKP-IKLVGRGERM 79 (289)
Q Consensus 3 ~ELk~i~~~~~P~ev~LVldAttgq--da~~~a~~F~~~v~i~gvIlTKlDetargG~aLS~~~~t~~P-I~FIgtGQkV 79 (289)
+|+.++.+.-...-+++.-..-..+ .+..+.....+.. ..+-|=++|-+ -..+.+| +.|+-.|+-|
T Consensus 7 ee~~~~i~~~~g~~vl~f~a~w~~~C~~m~~vl~~l~~~~--~~~~F~~V~~d---------~~V~~vPtfv~~~~g~~i 75 (204)
T PTZ00062 7 EEKDKLIESNTGKLVLYVKSSKEPEYEQLMDVCNALVEDF--PSLEFYVVNLA---------DANNEYGVFEFYQNSQLI 75 (204)
T ss_pred HHHHHHHhcCCCcEEEEEeCCCCcchHHHHHHHHHHHHHC--CCcEEEEEccc---------cCcccceEEEEEECCEEE
Confidence 4555554422122333333333333 2333444444422 35778888876 5668889 8899999999
Q ss_pred CCCCCCChhHHHHHhhC
Q 022952 80 EDLEPFYPDRMAGRILG 96 (289)
Q Consensus 80 dDLe~f~p~~la~rlLG 96 (289)
+-|.-++|..+++.+..
T Consensus 76 ~r~~G~~~~~~~~~~~~ 92 (204)
T PTZ00062 76 NSLEGCNTSTLVSFIRG 92 (204)
T ss_pred eeeeCCCHHHHHHHHHH
Confidence 99999999999887654
No 67
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=45.48 E-value=25 Score=35.39 Aligned_cols=69 Identities=14% Similarity=0.177 Sum_probs=35.7
Q ss_pred CCCeEEEEEeCcCc----H-HHH----HHHHHhhhhc--CCCeEEEecccCCCCCCccccceeccCCCeEEEe--cCCCC
Q 022952 13 NPTEVLLVVDAMTG----Q-EAA----ALVTTFNIEI--GITGAILTKLDGDSRGGAALSVKEVSGKPIKLVG--RGERM 79 (289)
Q Consensus 13 ~P~ev~LVldAttg----q-da~----~~a~~F~~~v--~i~gvIlTKlDetargG~aLS~~~~t~~PI~FIg--tGQkV 79 (289)
+-+-+++|+|++.. . +.. +....|...+ -+--+|+||+|....--.+-.+....+.||.+++ +|+.+
T Consensus 236 r~~llI~VID~s~~~~~dp~e~~~~i~~EL~~y~~~L~~kP~IVV~NK~DL~~~~e~l~~l~~~l~~~i~~iSA~tgeGI 315 (424)
T PRK12297 236 RTRVIVHVIDMSGSEGRDPIEDYEKINKELKLYNPRLLERPQIVVANKMDLPEAEENLEEFKEKLGPKVFPISALTGQGL 315 (424)
T ss_pred hCCEEEEEEeCCccccCChHHHHHHHHHHHhhhchhccCCcEEEEEeCCCCcCCHHHHHHHHHHhCCcEEEEeCCCCCCH
Confidence 45778999999743 1 222 2233443211 2456899999963211111122333446666665 45555
Q ss_pred CC
Q 022952 80 ED 81 (289)
Q Consensus 80 dD 81 (289)
++
T Consensus 316 ~e 317 (424)
T PRK12297 316 DE 317 (424)
T ss_pred HH
Confidence 44
No 68
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=45.30 E-value=76 Score=25.32 Aligned_cols=43 Identities=23% Similarity=0.139 Sum_probs=24.3
Q ss_pred hCCCeEEEEEeCcCcH--HHHHHHHHhhhhcCCCeEEEecccCCC
Q 022952 12 LNPTEVLLVVDAMTGQ--EAAALVTTFNIEIGITGAILTKLDGDS 54 (289)
Q Consensus 12 ~~P~ev~LVldAttgq--da~~~a~~F~~~v~i~gvIlTKlDeta 54 (289)
...+-+++|+|+.... ....+.......=..--+|+||+|...
T Consensus 83 ~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~ 127 (174)
T cd01895 83 ERADVVLLVIDATEGITEQDLRIAGLILEEGKALVIVVNKWDLVE 127 (174)
T ss_pred hhcCeEEEEEeCCCCcchhHHHHHHHHHhcCCCEEEEEeccccCC
Confidence 4568899999987663 232322222211123457788888754
No 69
>PLN03127 Elongation factor Tu; Provisional
Probab=45.26 E-value=44 Score=33.70 Aligned_cols=41 Identities=22% Similarity=0.295 Sum_probs=27.0
Q ss_pred hCCCeEEEEEeCcCcH--HHHHHHHHhhhhcCCCe--EEEecccCC
Q 022952 12 LNPTEVLLVVDAMTGQ--EAAALVTTFNIEIGITG--AILTKLDGD 53 (289)
Q Consensus 12 ~~P~ev~LVldAttgq--da~~~a~~F~~~v~i~g--vIlTKlDet 53 (289)
...|-++||+||..|. ...+.+..-. .+++.. +++||+|..
T Consensus 146 ~~aD~allVVda~~g~~~qt~e~l~~~~-~~gip~iIvviNKiDlv 190 (447)
T PLN03127 146 AQMDGGILVVSAPDGPMPQTKEHILLAR-QVGVPSLVVFLNKVDVV 190 (447)
T ss_pred hhCCEEEEEEECCCCCchhHHHHHHHHH-HcCCCeEEEEEEeeccC
Confidence 4578999999998763 2233333333 256664 468999974
No 70
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=45.23 E-value=45 Score=35.47 Aligned_cols=42 Identities=12% Similarity=-0.043 Sum_probs=26.3
Q ss_pred hCCCeEEEEEeCcCcH--HHHHHHHHhhhhcCCCeEEEecccCC
Q 022952 12 LNPTEVLLVVDAMTGQ--EAAALVTTFNIEIGITGAILTKLDGD 53 (289)
Q Consensus 12 ~~P~ev~LVldAttgq--da~~~a~~F~~~v~i~gvIlTKlDet 53 (289)
-..+-++||+|++.+. .-..++......=-+--+|+||+|..
T Consensus 531 ~~advvilViDat~~~s~~~~~i~~~~~~~~~piIiV~NK~DL~ 574 (712)
T PRK09518 531 ERSELALFLFDASQPISEQDLKVMSMAVDAGRALVLVFNKWDLM 574 (712)
T ss_pred hcCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEEchhcC
Confidence 3567899999999884 22233333322112446889999974
No 71
>PRK12751 cpxP periplasmic stress adaptor protein CpxP; Reviewed
Probab=44.91 E-value=1e+02 Score=27.25 Aligned_cols=55 Identities=27% Similarity=0.407 Sum_probs=41.6
Q ss_pred HHHHHHHHHHhCCcChHHHHHHHHHHHhcCchHHHHhcCCCCCCCCchhhHHhHHHHHHHHHHHhCCCHHhhcC
Q 022952 115 DAEEMQKKIMSANFDFNDFLKQTRTVARMGSMSRVIGMIPGMGKITPAQVREAEKSLKIMEAMIEAMTPEEREK 188 (289)
Q Consensus 115 ~~~~~~~k~~~g~F~l~Df~~Q~~~i~kmG~l~~i~~miPG~~~~~~~~~~~~e~~~k~~~~Ii~SMT~~Er~n 188 (289)
+-+++..-|....||=.-+..|++.+.. .+.+......+.+..|++-||||+|.-
T Consensus 83 ~~~~m~~Li~Ad~FDeaAvra~~~kma~-------------------~~~e~~v~~~~~~~qmy~lLTPEQra~ 137 (162)
T PRK12751 83 DREAMHKLITADKFDEAAVRAQAEKMSQ-------------------NQIERHVEMAKVRNQMYNLLTPEQKEA 137 (162)
T ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHH-------------------HHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 4556777778889999999988887552 233334567889999999999999963
No 72
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=44.74 E-value=1.2e+02 Score=29.73 Aligned_cols=68 Identities=21% Similarity=0.251 Sum_probs=37.5
Q ss_pred CCeEEEEEeCcCcHHHHHHHHHhhhhcCCCeEEEecccCCCCCCc---------ccccee----ccCCCeEEEe--cCCC
Q 022952 14 PTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGA---------ALSVKE----VSGKPIKLVG--RGER 78 (289)
Q Consensus 14 P~ev~LVldAttgqda~~~a~~F~~~v~i~gvIlTKlDetargG~---------aLS~~~----~t~~PI~FIg--tGQk 78 (289)
-|-+++|++...|.+...+-..--+ + -+-+|+||+|...+.+. +|.... .+..||.+++ +|+.
T Consensus 170 aD~vlvv~~p~~gd~iq~~k~gi~E-~-aDIiVVNKaDl~~~~~a~~~~~el~~~L~l~~~~~~~w~~pVi~vSA~~g~G 247 (332)
T PRK09435 170 VDFFLLLQLPGAGDELQGIKKGIME-L-ADLIVINKADGDNKTAARRAAAEYRSALRLLRPKDPGWQPPVLTCSALEGEG 247 (332)
T ss_pred CCEEEEEecCCchHHHHHHHhhhhh-h-hheEEeehhcccchhHHHHHHHHHHHHHhcccccccCCCCCEEEEECCCCCC
Confidence 3556677666677655443221111 1 14699999998765543 233321 2346888876 4665
Q ss_pred CCCCC
Q 022952 79 MEDLE 83 (289)
Q Consensus 79 VdDLe 83 (289)
|++|-
T Consensus 248 IdeL~ 252 (332)
T PRK09435 248 IDEIW 252 (332)
T ss_pred HHHHH
Confidence 55443
No 73
>cd03822 GT1_ecORF704_like This family is most closely related to the GT1 family of glycosyltransferases. ORF704 in E. coli has been shown to be involved in the biosynthesis of O-specific mannose homopolysaccharides.
Probab=44.69 E-value=92 Score=27.77 Aligned_cols=94 Identities=15% Similarity=0.188 Sum_probs=56.6
Q ss_pred CeEEEecccCCCCCCccccceeccCCCeEEEecCCCCCCCCCCChhHHHHHhhCCCchhHHHHHHHHhccH-HHHHHHHH
Q 022952 43 TGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQ-EDAEEMQK 121 (289)
Q Consensus 43 ~gvIlTKlDetargG~aLS~~~~t~~PI~FIgtGQkVdDLe~f~p~~la~rlLG~gDi~sLvEk~~~~~~~-~~~~~~~~ 121 (289)
|.+|++=..|....|..+-=+...|+||....+|- .+.+..-. ...+...+|+..+.+.++..++. +...++.+
T Consensus 269 d~~v~ps~~e~~~~~~~~~Ea~a~G~PvI~~~~~~-~~~i~~~~----~g~~~~~~d~~~~~~~l~~l~~~~~~~~~~~~ 343 (366)
T cd03822 269 DVVVLPYRSADQTQSGVLAYAIGFGKPVISTPVGH-AEEVLDGG----TGLLVPPGDPAALAEAIRRLLADPELAQALRA 343 (366)
T ss_pred CEEEecccccccccchHHHHHHHcCCCEEecCCCC-hheeeeCC----CcEEEcCCCHHHHHHHHHHHHcChHHHHHHHH
Confidence 44455433443344445545678999998876665 44443322 23455667888888888887753 33344444
Q ss_pred HHHh--CCcChHHHHHHHHHHH
Q 022952 122 KIMS--ANFDFNDFLKQTRTVA 141 (289)
Q Consensus 122 k~~~--g~F~l~Df~~Q~~~i~ 141 (289)
+-.+ .+|+.+.+.+++..+.
T Consensus 344 ~~~~~~~~~s~~~~~~~~~~~~ 365 (366)
T cd03822 344 RAREYARAMSWERVAERYLRLL 365 (366)
T ss_pred HHHHHHhhCCHHHHHHHHHHHh
Confidence 3322 2499999999887753
No 74
>COG1737 RpiR Transcriptional regulators [Transcription]
Probab=43.09 E-value=23 Score=33.15 Aligned_cols=57 Identities=16% Similarity=0.343 Sum_probs=45.1
Q ss_pred HHHHHHHHhCCCHHhh-------cCccccCCCchhhHHhhccCCCCHHHHHHHHHH-----HHHHHHHHHH
Q 022952 171 LKIMEAMIEAMTPEER-------EKPELLAESPVRRKRVAQDSGKTEQQVSQLVAQ-----LFQMRVRMKN 229 (289)
Q Consensus 171 ~k~~~~Ii~SMT~~Er-------~nP~li~~~~SR~~RIA~GSG~~~~eVn~Llk~-----f~~m~kmmk~ 229 (289)
+.++....++||+.|| +||+-+. ...+.-+|+-.|+++.-|.+|.+. |..++..++.
T Consensus 6 ~~~I~~~~~~Lt~~er~iA~yil~~~~~~~--~~si~elA~~a~VS~aTv~Rf~~kLGf~Gf~efk~~l~~ 74 (281)
T COG1737 6 LERIRERYDSLTKSERKIADYILANPDEVA--LLSIAELAERAGVSPATVVRFARKLGFEGFSEFKLALAQ 74 (281)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHhCHHHHH--HHHHHHHHHHhCCCHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 5678888999999999 4887553 378999999999999999999876 4555544443
No 75
>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein. Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which
Probab=43.01 E-value=1.2e+02 Score=23.50 Aligned_cols=78 Identities=14% Similarity=0.055 Sum_probs=47.3
Q ss_pred CeEEEEEeCcCcHHHHH---HHHHhhhhcCCCeEEEecccCCCCCCccccceeccCCC-eEEEecCCCCCCCCCCChhHH
Q 022952 15 TEVLLVVDAMTGQEAAA---LVTTFNIEIGITGAILTKLDGDSRGGAALSVKEVSGKP-IKLVGRGERMEDLEPFYPDRM 90 (289)
Q Consensus 15 ~ev~LVldAttgqda~~---~a~~F~~~v~i~gvIlTKlDetargG~aLS~~~~t~~P-I~FIgtGQkVdDLe~f~p~~l 90 (289)
.-+++-.-|+....+.. ....+....+-..+.+.++|.+. -.+...-...+.| +.|+-.|+.++-+.-++|+.+
T Consensus 18 ~~vvv~F~a~wC~~Ck~~~p~l~~~~~~~~~~~~~~~~vd~d~--~~~~~~~~v~~~Pt~~~~~~g~~~~~~~G~~~~~~ 95 (102)
T cd02948 18 GLTVVDVYQEWCGPCKAVVSLFKKIKNELGDDLLHFATAEADT--IDTLKRYRGKCEPTFLFYKNGELVAVIRGANAPLL 95 (102)
T ss_pred CeEEEEEECCcCHhHHHHhHHHHHHHHHcCCCcEEEEEEeCCC--HHHHHHcCCCcCcEEEEEECCEEEEEEecCChHHH
Confidence 34566666666553333 44444444443457788988872 2344445567777 566678887776776777766
Q ss_pred HHHh
Q 022952 91 AGRI 94 (289)
Q Consensus 91 a~rl 94 (289)
...|
T Consensus 96 ~~~i 99 (102)
T cd02948 96 NKTI 99 (102)
T ss_pred HHHH
Confidence 6554
No 76
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=42.94 E-value=47 Score=26.52 Aligned_cols=41 Identities=20% Similarity=0.047 Sum_probs=24.8
Q ss_pred CCCeEEEEEeCcCcHHHHHHHHHhhhhcCCCeEEEecccCC
Q 022952 13 NPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGD 53 (289)
Q Consensus 13 ~P~ev~LVldAttgqda~~~a~~F~~~v~i~gvIlTKlDet 53 (289)
..+-+++|+|+................=-+--+++||+|..
T Consensus 74 ~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~iiv~NK~Dl~ 114 (158)
T cd01879 74 KPDLIVNVVDATNLERNLYLTLQLLELGLPVVVALNMIDEA 114 (158)
T ss_pred CCcEEEEEeeCCcchhHHHHHHHHHHcCCCEEEEEehhhhc
Confidence 67889999999876533333222221001235888999974
No 77
>PRK12736 elongation factor Tu; Reviewed
Probab=41.68 E-value=50 Score=32.39 Aligned_cols=41 Identities=22% Similarity=0.255 Sum_probs=27.0
Q ss_pred hCCCeEEEEEeCcCcH--HHHHHHHHhhhhcCCCe--EEEecccCC
Q 022952 12 LNPTEVLLVVDAMTGQ--EAAALVTTFNIEIGITG--AILTKLDGD 53 (289)
Q Consensus 12 ~~P~ev~LVldAttgq--da~~~a~~F~~~v~i~g--vIlTKlDet 53 (289)
...|-++||+||..|- ...+.+..... .++.. +++||+|..
T Consensus 97 ~~~d~~llVvd~~~g~~~~t~~~~~~~~~-~g~~~~IvviNK~D~~ 141 (394)
T PRK12736 97 AQMDGAILVVAATDGPMPQTREHILLARQ-VGVPYLVVFLNKVDLV 141 (394)
T ss_pred hhCCEEEEEEECCCCCchhHHHHHHHHHH-cCCCEEEEEEEecCCc
Confidence 3568899999999863 33344433332 56763 469999974
No 78
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=41.50 E-value=55 Score=26.48 Aligned_cols=40 Identities=20% Similarity=0.165 Sum_probs=20.3
Q ss_pred CCCeEEEEEeCcCcH--HHHHHHHHhhh-hcCCCeEEEecccCC
Q 022952 13 NPTEVLLVVDAMTGQ--EAAALVTTFNI-EIGITGAILTKLDGD 53 (289)
Q Consensus 13 ~P~ev~LVldAttgq--da~~~a~~F~~-~v~i~gvIlTKlDet 53 (289)
..+-+++|+|++.+. +.......... .+ +--+|+||+|..
T Consensus 73 ~~d~il~v~d~~~~~~~~~~~~~~~~~~~~~-p~ivv~NK~Dl~ 115 (168)
T cd01887 73 LTDIAILVVAADDGVMPQTIEAIKLAKAANV-PFIVALNKIDKP 115 (168)
T ss_pred hcCEEEEEEECCCCccHHHHHHHHHHHHcCC-CEEEEEEceecc
Confidence 356678888887652 22222222211 12 235666777754
No 79
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=41.44 E-value=77 Score=25.72 Aligned_cols=42 Identities=14% Similarity=0.120 Sum_probs=25.5
Q ss_pred CCCeEEEEEeCcCc----HHHHHHHHHhhhhc-----CCCeEEEecccCCC
Q 022952 13 NPTEVLLVVDAMTG----QEAAALVTTFNIEI-----GITGAILTKLDGDS 54 (289)
Q Consensus 13 ~P~ev~LVldAttg----qda~~~a~~F~~~v-----~i~gvIlTKlDeta 54 (289)
.-+-+++|+|++.. +......+.+.... .+--+|+||+|...
T Consensus 78 ~~d~vi~v~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~ 128 (170)
T cd01898 78 RTRLLLHVIDLSGDDDPVEDYKTIRNELELYNPELLEKPRIVVLNKIDLLD 128 (170)
T ss_pred hCCEEEEEEecCCCCCHHHHHHHHHHHHHHhCccccccccEEEEEchhcCC
Confidence 45789999999987 23333444443211 22357888888633
No 80
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=41.18 E-value=41 Score=27.13 Aligned_cols=69 Identities=10% Similarity=-0.031 Sum_probs=35.9
Q ss_pred CCCeEEEEEeCcCcHH---HHHHHHHhhhhc---C-CCeEEEecccCCCCCCcc----ccceeccCCCeEEEe--cCCCC
Q 022952 13 NPTEVLLVVDAMTGQE---AAALVTTFNIEI---G-ITGAILTKLDGDSRGGAA----LSVKEVSGKPIKLVG--RGERM 79 (289)
Q Consensus 13 ~P~ev~LVldAttgqd---a~~~a~~F~~~v---~-i~gvIlTKlDetargG~a----LS~~~~t~~PI~FIg--tGQkV 79 (289)
..+-++||+|++.... +.+....+.... + +--+|.||+|....-... .......+.|+..+. +|++|
T Consensus 73 ~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i 152 (164)
T cd04145 73 TGEGFLLVFSVTDRGSFEEVDKFHTQILRVKDRDEFPMILVGNKADLEHQRKVSREEGQELARKLKIPYIETSAKDRLNV 152 (164)
T ss_pred hCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCCEEEEeeCccccccceecHHHHHHHHHHcCCcEEEeeCCCCCCH
Confidence 4578999999987653 222222222211 1 235789999975432111 111223456666655 56666
Q ss_pred CC
Q 022952 80 ED 81 (289)
Q Consensus 80 dD 81 (289)
++
T Consensus 153 ~~ 154 (164)
T cd04145 153 DK 154 (164)
T ss_pred HH
Confidence 44
No 81
>PRK06278 cobyrinic acid a,c-diamide synthase; Validated
Probab=41.17 E-value=19 Score=36.90 Aligned_cols=57 Identities=16% Similarity=0.105 Sum_probs=37.7
Q ss_pred CeEEEEEeCcCcH--HHHHHH---HHh--hhhcCCCeEEEecccCCCCCCccccceeccCCCeE
Q 022952 15 TEVLLVVDAMTGQ--EAAALV---TTF--NIEIGITGAILTKLDGDSRGGAALSVKEVSGKPIK 71 (289)
Q Consensus 15 ~ev~LVldAttgq--da~~~a---~~F--~~~v~i~gvIlTKlDetargG~aLS~~~~t~~PI~ 71 (289)
..++||+|+..+. .++..+ ..| ...+.+-|+||+++....-..-+-.+...+++||.
T Consensus 351 ~PVILV~~~~~g~i~~~~~~i~G~~~~l~~~~i~i~GVIlN~v~~~~~~~~~~~~le~~gvpVL 414 (476)
T PRK06278 351 FPVYIVSSCSKSGIEGAFVESMAYYSLLKKMGVKVEGIILNKVYNMEIFEKVKKIAENSNINLI 414 (476)
T ss_pred CCEEEEEcCCCChHHHHHHHHHHHHHHHhcCCCcEEEEEEECCCcHHHHHHHHHHHHhcCCCEE
Confidence 5799999998885 444543 345 33478999999999854333333344445677765
No 82
>PF10392 COG5: Golgi transport complex subunit 5; InterPro: IPR019465 The conserved oligomeric Golgi (COG) complex is a peripheral membrane complex involved in intra-Golgi protein trafficking. Subunit 5 is located in the smaller, B lobe, together with subunits 6-8, and has been shown to bind subunits 1 and 7 [].
Probab=41.13 E-value=2e+02 Score=23.94 Aligned_cols=64 Identities=19% Similarity=0.329 Sum_probs=44.6
Q ss_pred CCCChhHHHHHhhC--------CCchhHHHHHHHHhccHHHHHHHHHHHHhCCcChHHHHHHHHHHHhcCchHHHHhcC
Q 022952 83 EPFYPDRMAGRILG--------MGDVLSFVEKAQEVMQQEDAEEMQKKIMSANFDFNDFLKQTRTVARMGSMSRVIGMI 153 (289)
Q Consensus 83 e~f~p~~la~rlLG--------~gDi~sLvEk~~~~~~~~~~~~~~~k~~~g~F~l~Df~~Q~~~i~kmG~l~~i~~mi 153 (289)
..|+|..|++.+|. ..|+..-++|+..-+.+-+ +++.+-+. =+..|++.|...+.+ +..++..+
T Consensus 6 ~dFd~~~fan~ll~~~~~~~~~~ld~~~~l~kL~~~i~eld-~~i~~~v~---~~~~~LL~q~~~~~~---~~~~l~~v 77 (132)
T PF10392_consen 6 PDFDPVQFANDLLKSTNNNSDSELDISTPLKKLNFDIQELD-KRIRSQVT---SNHEDLLSQASSIEE---LESVLQAV 77 (132)
T ss_pred CCCCHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHHHHHHH-HHHHHHHH---hCHHHHHHHHHhHHH---HHHHHHHH
Confidence 46999999999999 8999999999988764332 23333332 245688888777664 44455554
No 83
>cd07894 Adenylation_RNA_ligase Adenylation domain of RNA circularization proteins. RNA circularization proteins are capable of circularizing RNA molecules in an ATP-dependent reaction. RNA circularization may protect RNA from exonuclease activity. This model comprises the adenylation domain, the minimal catalytic unit that is common to all members of the ATP-dependent DNA ligase family, and the carboxy-terminal extension of RNA circularization protein that serves as a dimerization module. ATP-dependent polynucleotide ligases catalyze phosphodiester bond formation of nicked nucleic acid substrates using the high energy nucleotide of ATP as a cofactor in a three step reaction mechanism. The adenylation domain binds ATP and contains many active site residues.
Probab=40.93 E-value=3.6e+02 Score=26.48 Aligned_cols=82 Identities=18% Similarity=0.229 Sum_probs=52.6
Q ss_pred HHHHHHHHHhC-C-CeEEEEEeCcCcHHHHHHHHHhhhhcCCCeEEEecccCCCCCCccccceeccCCCeEEEecCCCCC
Q 022952 3 DELKDVKRVLN-P-TEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGERME 80 (289)
Q Consensus 3 ~ELk~i~~~~~-P-~ev~LVldAttgqda~~~a~~F~~~v~i~gvIlTKlDetargG~aLS~~~~t~~PI~FIgtGQkVd 80 (289)
+|..++.+... | ..++...+...-.++.+..+.... -+-.|||+-..|.. ..|++|+|.--+++
T Consensus 145 ~eR~~lLe~lg~~~v~~~~~~~~~d~~~l~~~l~~~~~-~G~EGVVlK~~~~~-------------~~~~Ky~t~~~~~~ 210 (342)
T cd07894 145 EERRELLEKYGLPTVRLFGEFTADEIEELKEIIRELDK-EGREGVVLKDPDMR-------------VPPLKYTTSYSNCS 210 (342)
T ss_pred HHHHHHHHhcCCCCcceEEEEecCCHHHHHHHHHHHHH-CCCceEEEeccccc-------------cCcceeecCCCCcH
Confidence 34455555442 2 223333444443344444454443 57889999888853 34999999999999
Q ss_pred CCCC-------CChhHHHHHhhCCC
Q 022952 81 DLEP-------FYPDRMAGRILGMG 98 (289)
Q Consensus 81 DLe~-------f~p~~la~rlLG~g 98 (289)
||.. +.++.|.+||+.+|
T Consensus 211 di~~~~~~~~d~~~~~~~~Ri~R~~ 235 (342)
T cd07894 211 DIRYAFRYPFDLGRDFFFSRIVREG 235 (342)
T ss_pred HHHHHhhhccccCchHHHHHHHHHH
Confidence 9864 56889999998864
No 84
>PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=40.64 E-value=1.3e+02 Score=27.51 Aligned_cols=110 Identities=14% Similarity=0.217 Sum_probs=62.0
Q ss_pred HHHHHHHHhCCCeEEEEEeCcC------------------cHHHHHHHHHhhhhcCCCeEEEecccCC-CCCCcccc---
Q 022952 4 ELKDVKRVLNPTEVLLVVDAMT------------------GQEAAALVTTFNIEIGITGAILTKLDGD-SRGGAALS--- 61 (289)
Q Consensus 4 ELk~i~~~~~P~ev~LVldAtt------------------gqda~~~a~~F~~~v~i~gvIlTKlDet-argG~aLS--- 61 (289)
-++++.+...++.+.+.+|.-. .-+..+.++.+.+ .+++.+|+|=+|.+ +.-|-=+.
T Consensus 112 ~~~ei~~~~g~~~iv~slD~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~-~g~~~ii~~~i~~~g~~~g~d~~~i~ 190 (253)
T PRK02083 112 LISEAADRFGSQCIVVAIDAKRDPEPGRWEVYTHGGRKPTGLDAVEWAKEVEE-LGAGEILLTSMDRDGTKNGYDLELTR 190 (253)
T ss_pred HHHHHHHHcCCCCEEEEEEeccCCCCCCEEEEEcCCceecCCCHHHHHHHHHH-cCCCEEEEcCCcCCCCCCCcCHHHHH
Confidence 3455556555567888888643 2245667777776 79999999976642 22222222
Q ss_pred -ceeccCCCeEEEecCCCCCCCCCCChhHHHHHh--hCCCchhHHHHHHHHhccHHHHHHHHHHHHhCCcChHHHHHHHH
Q 022952 62 -VKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRI--LGMGDVLSFVEKAQEVMQQEDAEEMQKKIMSANFDFNDFLKQTR 138 (289)
Q Consensus 62 -~~~~t~~PI~FIgtGQkVdDLe~f~p~~la~rl--LG~gDi~sLvEk~~~~~~~~~~~~~~~k~~~g~F~l~Df~~Q~~ 138 (289)
++..++.||.+-| -..+++.+...+ .|- ..+ -....+-.|++++.+++++++
T Consensus 191 ~~~~~~~ipvia~G--------Gv~s~~d~~~~~~~~G~----------~gv-------ivg~al~~~~~~~~~~~~~~~ 245 (253)
T PRK02083 191 AVSDAVNVPVIASG--------GAGNLEHFVEAFTEGGA----------DAA-------LAASIFHFGEITIGELKAYLA 245 (253)
T ss_pred HHHhhCCCCEEEEC--------CCCCHHHHHHHHHhCCc----------cEE-------eEhHHHHcCCCCHHHHHHHHH
Confidence 2333467776666 334444444322 121 001 122344567888888887775
Q ss_pred H
Q 022952 139 T 139 (289)
Q Consensus 139 ~ 139 (289)
.
T Consensus 246 ~ 246 (253)
T PRK02083 246 E 246 (253)
T ss_pred H
Confidence 3
No 85
>PRK00049 elongation factor Tu; Reviewed
Probab=39.70 E-value=60 Score=31.94 Aligned_cols=41 Identities=22% Similarity=0.263 Sum_probs=27.1
Q ss_pred hCCCeEEEEEeCcCcH--HHHHHHHHhhhhcCCCeE--EEecccCC
Q 022952 12 LNPTEVLLVVDAMTGQ--EAAALVTTFNIEIGITGA--ILTKLDGD 53 (289)
Q Consensus 12 ~~P~ev~LVldAttgq--da~~~a~~F~~~v~i~gv--IlTKlDet 53 (289)
...|-++||+||..|. ...+.+.... ..++.-+ ++||+|..
T Consensus 97 ~~aD~~llVVDa~~g~~~qt~~~~~~~~-~~g~p~iiVvvNK~D~~ 141 (396)
T PRK00049 97 AQMDGAILVVSAADGPMPQTREHILLAR-QVGVPYIVVFLNKCDMV 141 (396)
T ss_pred ccCCEEEEEEECCCCCchHHHHHHHHHH-HcCCCEEEEEEeecCCc
Confidence 3568899999999874 3333443333 2566653 58999985
No 86
>CHL00071 tufA elongation factor Tu
Probab=39.48 E-value=59 Score=32.10 Aligned_cols=41 Identities=22% Similarity=0.282 Sum_probs=26.8
Q ss_pred hCCCeEEEEEeCcCcH--HHHHHHHHhhhhcCCC-e-EEEecccCC
Q 022952 12 LNPTEVLLVVDAMTGQ--EAAALVTTFNIEIGIT-G-AILTKLDGD 53 (289)
Q Consensus 12 ~~P~ev~LVldAttgq--da~~~a~~F~~~v~i~-g-vIlTKlDet 53 (289)
...|-++||+||..|- ...+.+.... ..++. - +++||+|..
T Consensus 97 ~~~D~~ilVvda~~g~~~qt~~~~~~~~-~~g~~~iIvvvNK~D~~ 141 (409)
T CHL00071 97 AQMDGAILVVSAADGPMPQTKEHILLAK-QVGVPNIVVFLNKEDQV 141 (409)
T ss_pred HhCCEEEEEEECCCCCcHHHHHHHHHHH-HcCCCEEEEEEEccCCC
Confidence 3568899999999764 2333333333 35666 3 469999974
No 87
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=39.47 E-value=58 Score=26.75 Aligned_cols=15 Identities=40% Similarity=0.468 Sum_probs=8.9
Q ss_pred CCCeEEEEEeCcCcH
Q 022952 13 NPTEVLLVVDAMTGQ 27 (289)
Q Consensus 13 ~P~ev~LVldAttgq 27 (289)
..+-+++|+|+..+.
T Consensus 85 ~~d~~i~v~d~~~~~ 99 (189)
T cd00881 85 VSDGAILVVDANEGV 99 (189)
T ss_pred hcCEEEEEEECCCCC
Confidence 455666666666543
No 88
>KOG0332 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=39.07 E-value=1.5e+02 Score=30.29 Aligned_cols=86 Identities=24% Similarity=0.283 Sum_probs=62.7
Q ss_pred CCeEEEEEeCcCcHHHHHHHHHhhhhcCCCeEEEecccCCCCCCc--cccceeccCCCeEEEecCCCCCCCCCCChhHHH
Q 022952 14 PTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGA--ALSVKEVSGKPIKLVGRGERMEDLEPFYPDRMA 91 (289)
Q Consensus 14 P~ev~LVldAttgqda~~~a~~F~~~v~i~gvIlTKlDetargG~--aLS~~~~t~~PI~FIgtGQkVdDLe~f~p~~la 91 (289)
.++|-++=--.+.++-..+++.|.+ +-+.|.+| .+-.+||=- -+|++..+.+|+.|-|. ++++.+.
T Consensus 354 Gh~V~~l~G~l~~~~R~~ii~~Fr~--g~~kVLit-TnV~ARGiDv~qVs~VvNydlP~~~~~~---------pD~etYl 421 (477)
T KOG0332|consen 354 GHQVSLLHGDLTVEQRAAIIDRFRE--GKEKVLIT-TNVCARGIDVAQVSVVVNYDLPVKYTGE---------PDYETYL 421 (477)
T ss_pred CceeEEeeccchhHHHHHHHHHHhc--CcceEEEE-echhhcccccceEEEEEecCCccccCCC---------CCHHHHH
Confidence 4566655555566677789999997 77777776 456677643 47899999999999663 8999999
Q ss_pred HHhhCCC---------------chhHHHHHHHHhc
Q 022952 92 GRILGMG---------------DVLSFVEKAQEVM 111 (289)
Q Consensus 92 ~rlLG~g---------------Di~sLvEk~~~~~ 111 (289)
.||=.-| +...+++++|+.+
T Consensus 422 HRiGRtGRFGkkG~a~n~v~~~~s~~~mn~iq~~F 456 (477)
T KOG0332|consen 422 HRIGRTGRFGKKGLAINLVDDKDSMNIMNKIQKHF 456 (477)
T ss_pred HHhcccccccccceEEEeecccCcHHHHHHHHHHH
Confidence 9985533 5566677776655
No 89
>PRK12735 elongation factor Tu; Reviewed
Probab=38.78 E-value=64 Score=31.68 Aligned_cols=41 Identities=22% Similarity=0.263 Sum_probs=26.5
Q ss_pred hCCCeEEEEEeCcCcH--HHHHHHHHhhhhcCCCeE--EEecccCC
Q 022952 12 LNPTEVLLVVDAMTGQ--EAAALVTTFNIEIGITGA--ILTKLDGD 53 (289)
Q Consensus 12 ~~P~ev~LVldAttgq--da~~~a~~F~~~v~i~gv--IlTKlDet 53 (289)
...|-++||+||..|. ...+.+.... ..++.-+ ++||+|..
T Consensus 97 ~~aD~~llVvda~~g~~~qt~e~l~~~~-~~gi~~iivvvNK~Dl~ 141 (396)
T PRK12735 97 AQMDGAILVVSAADGPMPQTREHILLAR-QVGVPYIVVFLNKCDMV 141 (396)
T ss_pred ccCCEEEEEEECCCCCchhHHHHHHHHH-HcCCCeEEEEEEecCCc
Confidence 3567889999999864 2333333333 2566644 48999974
No 90
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=36.75 E-value=1.6e+02 Score=30.36 Aligned_cols=77 Identities=23% Similarity=0.195 Sum_probs=45.6
Q ss_pred hCCCeEEEEEeCcCc--HHHHHHHHHhhhhcCCCeEEEecccCCCCCCccccceeccCCCeEEEe--cCCCCCCCCCCCh
Q 022952 12 LNPTEVLLVVDAMTG--QEAAALVTTFNIEIGITGAILTKLDGDSRGGAALSVKEVSGKPIKLVG--RGERMEDLEPFYP 87 (289)
Q Consensus 12 ~~P~ev~LVldAttg--qda~~~a~~F~~~v~i~gvIlTKlDetargG~aLS~~~~t~~PI~FIg--tGQkVdDLe~f~p 87 (289)
-+.|-+++|+|++.. .+-..... ....-...=+|+||.|-....=...- ....+.|+.+++ |||.+++|+..=-
T Consensus 295 ~~ADlvL~v~D~~~~~~~~d~~~~~-~~~~~~~~i~v~NK~DL~~~~~~~~~-~~~~~~~~i~iSa~t~~Gl~~L~~~i~ 372 (454)
T COG0486 295 EEADLVLFVLDASQPLDKEDLALIE-LLPKKKPIIVVLNKADLVSKIELESE-KLANGDAIISISAKTGEGLDALREAIK 372 (454)
T ss_pred HhCCEEEEEEeCCCCCchhhHHHHH-hcccCCCEEEEEechhcccccccchh-hccCCCceEEEEecCccCHHHHHHHHH
Confidence 457899999999995 22223333 22212345789999998664332111 334455677765 5777777765433
Q ss_pred hHH
Q 022952 88 DRM 90 (289)
Q Consensus 88 ~~l 90 (289)
..+
T Consensus 373 ~~~ 375 (454)
T COG0486 373 QLF 375 (454)
T ss_pred HHH
Confidence 333
No 91
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=36.45 E-value=86 Score=24.43 Aligned_cols=41 Identities=12% Similarity=0.041 Sum_probs=25.8
Q ss_pred CCCeEEEEEeCcCcH---HHHHHHHHhhhhc---CCCeEEEecccCC
Q 022952 13 NPTEVLLVVDAMTGQ---EAAALVTTFNIEI---GITGAILTKLDGD 53 (289)
Q Consensus 13 ~P~ev~LVldAttgq---da~~~a~~F~~~v---~i~gvIlTKlDet 53 (289)
+.+-+++|+|++... ++......+.... .+--+|+||+|..
T Consensus 72 ~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~ 118 (159)
T cd00154 72 GAHGAILVYDITNRESFENLDKWLKELKEYAPENIPIILVGNKIDLE 118 (159)
T ss_pred CCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEccccc
Confidence 468899999998753 2223333333322 3457888999985
No 92
>PRK14114 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=36.41 E-value=58 Score=30.20 Aligned_cols=69 Identities=13% Similarity=0.177 Sum_probs=49.5
Q ss_pred CCeEEEEEeCcCc------------HHHHHHHHHhhhhcCCCeEEEecccCCCCCCcc-----ccceeccCCCeEEEecC
Q 022952 14 PTEVLLVVDAMTG------------QEAAALVTTFNIEIGITGAILTKLDGDSRGGAA-----LSVKEVSGKPIKLVGRG 76 (289)
Q Consensus 14 P~ev~LVldAttg------------qda~~~a~~F~~~v~i~gvIlTKlDetargG~a-----LS~~~~t~~PI~FIgtG 76 (289)
+.++.+.+|+--| .+..+.++.|.+ .++..+|+|=+|-+-..-|. =.++..++.||.+-|--
T Consensus 119 ~~~ivvslD~k~g~v~~~gw~~~~~~~~~e~~~~~~~-~g~~~ii~tdI~rdGt~~G~d~el~~~l~~~~~~pviasGGv 197 (241)
T PRK14114 119 DVEPVFSLDTRGGKVAFKGWLAEEEIDPVSLLKRLKE-YGLEEIVHTEIEKDGTLQEHDFSLTRKIAIEAEVKVFAAGGI 197 (241)
T ss_pred CCCEEEEEEccCCEEeeCCCeecCCCCHHHHHHHHHh-cCCCEEEEEeechhhcCCCcCHHHHHHHHHHCCCCEEEECCC
Confidence 5678999998433 367888999987 99999999988876554432 23345578899888855
Q ss_pred CCCCCCC
Q 022952 77 ERMEDLE 83 (289)
Q Consensus 77 QkVdDLe 83 (289)
-.++||.
T Consensus 198 ~s~~Dl~ 204 (241)
T PRK14114 198 SSENSLK 204 (241)
T ss_pred CCHHHHH
Confidence 5556654
No 93
>COG1162 Predicted GTPases [General function prediction only]
Probab=36.19 E-value=7.9 Score=37.54 Aligned_cols=115 Identities=21% Similarity=0.318 Sum_probs=70.0
Q ss_pred CCCeEEEEEeCcCcHHHHHHHHHhhh---hcCCCe-EEEecccCCCCCCcc----ccceeccCCCeEEEe--cCCCCCCC
Q 022952 13 NPTEVLLVVDAMTGQEAAALVTTFNI---EIGITG-AILTKLDGDSRGGAA----LSVKEVSGKPIKLVG--RGERMEDL 82 (289)
Q Consensus 13 ~P~ev~LVldAttgqda~~~a~~F~~---~v~i~g-vIlTKlDetargG~a----LS~~~~t~~PI~FIg--tGQkVdDL 82 (289)
+-+++++|+++.-..=-.+++++|-- +-+|.- ++|||+|-...-... +......+.|+.|++ +++.++.|
T Consensus 79 n~d~~iiIvs~~~P~~~~~~ldR~Lv~ae~~gi~pvIvlnK~DL~~~~~~~~~~~~~~y~~~gy~v~~~s~~~~~~~~~l 158 (301)
T COG1162 79 NNDQAIIVVSLVDPDFNTNLLDRYLVLAEAGGIEPVIVLNKIDLLDDEEAAVKELLREYEDIGYPVLFVSAKNGDGLEEL 158 (301)
T ss_pred ccceEEEEEeccCCCCCHHHHHHHHHHHHHcCCcEEEEEEccccCcchHHHHHHHHHHHHhCCeeEEEecCcCcccHHHH
Confidence 45889999998877522223333322 224543 568999997665554 455556999999999 77777666
Q ss_pred CCCChhHHHHHhhCCCc--hhHHHHHHHHhccHHHHHHHHHHHHhCCcC
Q 022952 83 EPFYPDRMAGRILGMGD--VLSFVEKAQEVMQQEDAEEMQKKIMSANFD 129 (289)
Q Consensus 83 e~f~p~~la~rlLG~gD--i~sLvEk~~~~~~~~~~~~~~~k~~~g~F~ 129 (289)
...=+.+ +.-++|..- =.||+.++.-..+. +-.++.++...|+=|
T Consensus 159 ~~~l~~~-~svl~GqSGVGKSSLiN~L~p~~~~-~t~eIS~~~~rGkHT 205 (301)
T COG1162 159 AELLAGK-ITVLLGQSGVGKSTLINALLPELNQ-KTGEISEKLGRGRHT 205 (301)
T ss_pred HHHhcCC-eEEEECCCCCcHHHHHHhhCchhhh-hhhhhcccCCCCCCc
Confidence 6555554 445555422 24666666443322 234666777677543
No 94
>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=36.18 E-value=26 Score=35.81 Aligned_cols=75 Identities=25% Similarity=0.146 Sum_probs=45.7
Q ss_pred HHHHHHhC-CCeEEEEEeCcC---cH--HHHHHHHHhhhhcCCCeEEEecccCCC---------CCCccccceeccCCCe
Q 022952 6 KDVKRVLN-PTEVLLVVDAMT---GQ--EAAALVTTFNIEIGITGAILTKLDGDS---------RGGAALSVKEVSGKPI 70 (289)
Q Consensus 6 k~i~~~~~-P~ev~LVldAtt---gq--da~~~a~~F~~~v~i~gvIlTKlDeta---------rgG~aLS~~~~t~~PI 70 (289)
+.+...++ -+-.+||||+.- .| +.+.+.+-|. +.-.-+++||+|-+. ...+-++ ....++=.
T Consensus 65 ~~miag~~~~d~alLvV~~deGl~~qtgEhL~iLdllg--i~~giivltk~D~~d~~r~e~~i~~Il~~l~-l~~~~i~~ 141 (447)
T COG3276 65 SNLLAGLGGIDYALLVVAADEGLMAQTGEHLLILDLLG--IKNGIIVLTKADRVDEARIEQKIKQILADLS-LANAKIFK 141 (447)
T ss_pred HHHHhhhcCCceEEEEEeCccCcchhhHHHHHHHHhcC--CCceEEEEeccccccHHHHHHHHHHHHhhcc-cccccccc
Confidence 44444443 467899999954 44 4445566654 344458999999974 3344444 33344433
Q ss_pred EEEecCCCCCCCC
Q 022952 71 KLVGRGERMEDLE 83 (289)
Q Consensus 71 ~FIgtGQkVdDLe 83 (289)
....+||.|+||.
T Consensus 142 ~s~~~g~GI~~Lk 154 (447)
T COG3276 142 TSAKTGRGIEELK 154 (447)
T ss_pred cccccCCCHHHHH
Confidence 4566799887764
No 95
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=35.95 E-value=25 Score=32.25 Aligned_cols=96 Identities=15% Similarity=0.187 Sum_probs=50.2
Q ss_pred CCCeEEEEEeCcCcHHHHHHHHHhhhh---cC-CCeEEEecccCCCCCC---ccccceeccCCCeEEEe--cCCCCCCCC
Q 022952 13 NPTEVLLVVDAMTGQEAAALVTTFNIE---IG-ITGAILTKLDGDSRGG---AALSVKEVSGKPIKLVG--RGERMEDLE 83 (289)
Q Consensus 13 ~P~ev~LVldAttgqda~~~a~~F~~~---v~-i~gvIlTKlDetargG---~aLS~~~~t~~PI~FIg--tGQkVdDLe 83 (289)
+-+.+++|.|++....-.+.+..|... -+ .--+|+||.|....-- ..+......+.|+.+++ +|+.|++|-
T Consensus 36 n~D~viiV~d~~~p~~s~~~l~r~l~~~~~~~i~~vIV~NK~DL~~~~~~~~~~~~~~~~~g~~v~~~SAktg~gi~eLf 115 (245)
T TIGR00157 36 NIDQIVIVSSAVLPELSLNQLDRFLVVAEAQNIEPIIVLNKIDLLDDEDMEKEQLDIYRNIGYQVLMTSSKNQDGLKELI 115 (245)
T ss_pred cCCEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEECcccCCCHHHHHHHHHHHHHCCCeEEEEecCCchhHHHHH
Confidence 457889999998544222222222211 12 2368899999743211 11222334678888877 677776543
Q ss_pred CCChhHHHHHhhCCCch--hHHHHHHHH
Q 022952 84 PFYPDRMAGRILGMGDV--LSFVEKAQE 109 (289)
Q Consensus 84 ~f~p~~la~rlLG~gDi--~sLvEk~~~ 109 (289)
..=... ..-++|...+ .||+.....
T Consensus 116 ~~l~~~-~~~~~G~sgvGKStLiN~L~~ 142 (245)
T TIGR00157 116 EALQNR-ISVFAGQSGVGKSSLINALDP 142 (245)
T ss_pred hhhcCC-EEEEECCCCCCHHHHHHHHhh
Confidence 221111 2335554222 566666543
No 96
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=35.77 E-value=46 Score=26.78 Aligned_cols=68 Identities=12% Similarity=0.059 Sum_probs=34.3
Q ss_pred CCCeEEEEEeCcCcHH---HHHHHHHhhh-----hcCCCeEEEecccCCCCCCc----cccceeccCCCeEEEe--cCCC
Q 022952 13 NPTEVLLVVDAMTGQE---AAALVTTFNI-----EIGITGAILTKLDGDSRGGA----ALSVKEVSGKPIKLVG--RGER 78 (289)
Q Consensus 13 ~P~ev~LVldAttgqd---a~~~a~~F~~-----~v~i~gvIlTKlDetargG~----aLS~~~~t~~PI~FIg--tGQk 78 (289)
..+-++||.|.+.... +.+..+.+.. ..| =-+|.||.|....-.. +.......+.|+..++ +|+.
T Consensus 72 ~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~p-iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 150 (163)
T cd04136 72 NGQGFVLVYSITSQSSFNDLQDLREQILRVKDTENVP-MVLVGNKCDLEDERVVSREEGQALARQWGCPFYETSAKSKIN 150 (163)
T ss_pred cCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCC-EEEEEECccccccceecHHHHHHHHHHcCCeEEEecCCCCCC
Confidence 4577889999887642 2222223322 122 2368899997432111 1122334456665554 4555
Q ss_pred CCC
Q 022952 79 MED 81 (289)
Q Consensus 79 VdD 81 (289)
|++
T Consensus 151 v~~ 153 (163)
T cd04136 151 VDE 153 (163)
T ss_pred HHH
Confidence 543
No 97
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=35.59 E-value=92 Score=26.60 Aligned_cols=40 Identities=28% Similarity=0.210 Sum_probs=22.9
Q ss_pred CCCeEEEEEeCcCcH--HHHHHHHHhhhhcCCC-eEEEecccCC
Q 022952 13 NPTEVLLVVDAMTGQ--EAAALVTTFNIEIGIT-GAILTKLDGD 53 (289)
Q Consensus 13 ~P~ev~LVldAttgq--da~~~a~~F~~~v~i~-gvIlTKlDet 53 (289)
..+-+++|+|++.+. ...+... +....+.. -+|+||+|..
T Consensus 91 ~~d~vi~VvD~~~~~~~~~~~~~~-~~~~~~~~~iiv~NK~Dl~ 133 (192)
T cd01889 91 IIDLMLLVVDATKGIQTQTAECLV-IGEILCKKLIVVLNKIDLI 133 (192)
T ss_pred hCCEEEEEEECCCCccHHHHHHHH-HHHHcCCCEEEEEECcccC
Confidence 467899999998864 1111111 11112332 3788999974
No 98
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=35.47 E-value=1.6e+02 Score=26.95 Aligned_cols=98 Identities=18% Similarity=0.269 Sum_probs=57.7
Q ss_pred cCCCeEEEecCCCCCCCCCCChhHHHHHhhCCCchhHHHHHHHHhccHHHHHHHHHHHHhCCcChHHHHHHHHHHHhcCc
Q 022952 66 SGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQKKIMSANFDFNDFLKQTRTVARMGS 145 (289)
Q Consensus 66 t~~PI~FIgtGQkVdDLe~f~p~~la~rlLG~gDi~sLvEk~~~~~~~~~~~~~~~k~~~g~F~l~Df~~Q~~~i~kmG~ 145 (289)
+|+.=+|+.+- |-|+..+.+.+.-. -|+++.|-||+++.-+....-+.-=|-.+.-.|+..+.+-++.+.|
T Consensus 60 YGKqKIY~a~Q---DqF~~~~~eel~~l---d~~i~~l~ek~q~l~~t~s~veaEik~L~s~Lt~eemQe~i~~L~k--- 130 (201)
T KOG4603|consen 60 YGKQKIYFADQ---DQFDMVSDEELQVL---DGKIVALTEKVQSLQQTCSYVEAEIKELSSALTTEEMQEEIQELKK--- 130 (201)
T ss_pred ccceeeEeecH---HhhcCCChHHHHHH---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHH---
Confidence 45555565531 23455555555432 3799999999988754322111112223345666666666655442
Q ss_pred hHHHHhcCCCCCCCCchhhHHhHHHHHHHHHHHhCCCHHhhcCc
Q 022952 146 MSRVIGMIPGMGKITPAQVREAEKSLKIMEAMIEAMTPEEREKP 189 (289)
Q Consensus 146 l~~i~~miPG~~~~~~~~~~~~e~~~k~~~~Ii~SMT~~Er~nP 189 (289)
......++++.+.+=++--||++..+-
T Consensus 131 -----------------ev~~~~erl~~~k~g~~~vtpedk~~v 157 (201)
T KOG4603|consen 131 -----------------EVAGYRERLKNIKAGTNHVTPEDKEQV 157 (201)
T ss_pred -----------------HHHHHHHHHHHHHHhcccCCHHHHHHH
Confidence 233446788899999999999887654
No 99
>PRK01889 GTPase RsgA; Reviewed
Probab=35.46 E-value=29 Score=33.76 Aligned_cols=73 Identities=21% Similarity=0.232 Sum_probs=40.9
Q ss_pred hCCCeEEEEEeCcCcHHH--HH--HHHHhhhhcCCCeEEEecccCCCCCCcccccee--ccCCCeEEEe--cCCCCCCCC
Q 022952 12 LNPTEVLLVVDAMTGQEA--AA--LVTTFNIEIGITGAILTKLDGDSRGGAALSVKE--VSGKPIKLVG--RGERMEDLE 83 (289)
Q Consensus 12 ~~P~ev~LVldAttgqda--~~--~a~~F~~~v~i~gvIlTKlDetargG~aLS~~~--~t~~PI~FIg--tGQkVdDLe 83 (289)
.+-|.+++|+++.-..+. .+ .+.+....+++ -+||||.|.....-..+.... ..+.||.+++ +|+.+++|.
T Consensus 111 ANvD~vliV~s~~p~~~~~~ldr~L~~a~~~~i~p-iIVLNK~DL~~~~~~~~~~~~~~~~g~~Vi~vSa~~g~gl~~L~ 189 (356)
T PRK01889 111 ANVDTVFIVCSLNHDFNLRRIERYLALAWESGAEP-VIVLTKADLCEDAEEKIAEVEALAPGVPVLAVSALDGEGLDVLA 189 (356)
T ss_pred EeCCEEEEEEecCCCCChhHHHHHHHHHHHcCCCE-EEEEEChhcCCCHHHHHHHHHHhCCCCcEEEEECCCCccHHHHH
Confidence 456789999999643322 22 12222223555 689999998543111111111 3478998877 467666554
Q ss_pred CC
Q 022952 84 PF 85 (289)
Q Consensus 84 ~f 85 (289)
.+
T Consensus 190 ~~ 191 (356)
T PRK01889 190 AW 191 (356)
T ss_pred HH
Confidence 43
No 100
>PRK13586 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=34.99 E-value=88 Score=28.78 Aligned_cols=79 Identities=18% Similarity=0.212 Sum_probs=54.3
Q ss_pred HHHHHHHHhCCCeEEEEEeCc------------CcHHHHHHHHHhhhhcCCCeEEEecccCCCCCCcc----ccceeccC
Q 022952 4 ELKDVKRVLNPTEVLLVVDAM------------TGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAA----LSVKEVSG 67 (289)
Q Consensus 4 ELk~i~~~~~P~ev~LVldAt------------tgqda~~~a~~F~~~v~i~gvIlTKlDetargG~a----LS~~~~t~ 67 (289)
-++++.+...+..+++-+|+. ++-+..+.++.+.+ .++..+|+|=+|-+-..-|. +..+....
T Consensus 111 ~~~~~~~~~g~~~ivvslD~~~~~~v~~~gw~~~~~~~~e~~~~l~~-~g~~~ii~tdI~~dGt~~G~d~el~~~~~~~~ 189 (232)
T PRK13586 111 LFHDIVREIGSNRVLVSIDYDNTKRVLIRGWKEKSMEVIDGIKKVNE-LELLGIIFTYISNEGTTKGIDYNVKDYARLIR 189 (232)
T ss_pred HHHHHHHHhCCCCEEEEEEcCCCCEEEccCCeeCCCCHHHHHHHHHh-cCCCEEEEecccccccCcCcCHHHHHHHHhCC
Confidence 355566666677899999982 12256678888886 99999999999987776664 44444445
Q ss_pred CCeEEEecCCCC-CCCCC
Q 022952 68 KPIKLVGRGERM-EDLEP 84 (289)
Q Consensus 68 ~PI~FIgtGQkV-dDLe~ 84 (289)
.|+.+ +-|=+- +||..
T Consensus 190 ~~via-sGGv~s~~Dl~~ 206 (232)
T PRK13586 190 GLKEY-AGGVSSDADLEY 206 (232)
T ss_pred CCEEE-ECCCCCHHHHHH
Confidence 67544 556555 77754
No 101
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=34.45 E-value=60 Score=28.44 Aligned_cols=96 Identities=13% Similarity=-0.082 Sum_probs=55.0
Q ss_pred hCCCeEEEEEeCcCcHHH---HHHHHHhhhh------cCCCeEEEecccCCCCCCc---cc-cce-eccCCCeEEEe--c
Q 022952 12 LNPTEVLLVVDAMTGQEA---AALVTTFNIE------IGITGAILTKLDGDSRGGA---AL-SVK-EVSGKPIKLVG--R 75 (289)
Q Consensus 12 ~~P~ev~LVldAttgqda---~~~a~~F~~~------v~i~gvIlTKlDetargG~---aL-S~~-~~t~~PI~FIg--t 75 (289)
...+-++||+|++..... ....+.+... --+--+|.||+|....--. .+ ... ...++|+..++ +
T Consensus 79 ~~ad~iilv~D~~~~~S~~~~~~~~~~i~~~~~~~~~~~piiivgNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sak~ 158 (198)
T cd04142 79 RNSRAFILVYDICSPDSFHYVKLLRQQILETRPAGNKEPPIVVVGNKRDQQRHRFAPRHVLSVLVRKSWKCGYLECSAKY 158 (198)
T ss_pred ccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcccCCCCCCEEEEEECccccccccccHHHHHHHHHHhcCCcEEEecCCC
Confidence 356889999999987522 2222222211 1234689999998432100 00 111 13467777776 6
Q ss_pred CCCCCCCCCCChhHHHHHhhCCCchhHHHHHHHHhc
Q 022952 76 GERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVM 111 (289)
Q Consensus 76 GQkVdDLe~f~p~~la~rlLG~gDi~sLvEk~~~~~ 111 (289)
|.+|++|- +.++..++..|-...+....+.+.
T Consensus 159 g~~v~~lf----~~i~~~~~~~~~~~~~~~~~~~~~ 190 (198)
T cd04142 159 NWHILLLF----KELLISATTRGRSTHPALRLQGAL 190 (198)
T ss_pred CCCHHHHH----HHHHHHhhccCCCccHHHHHHHHH
Confidence 77776652 667777777766666666655543
No 102
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=34.20 E-value=75 Score=33.48 Aligned_cols=40 Identities=25% Similarity=0.279 Sum_probs=25.6
Q ss_pred CCCeEEEEEeCcCcH--HHHHHHHHhhhhcCCC--eEEEecccCC
Q 022952 13 NPTEVLLVVDAMTGQ--EAAALVTTFNIEIGIT--GAILTKLDGD 53 (289)
Q Consensus 13 ~P~ev~LVldAttgq--da~~~a~~F~~~v~i~--gvIlTKlDet 53 (289)
..|-++||+||..|- ...+.+..... +++. -+|+||+|..
T Consensus 74 ~~D~~lLVVda~eg~~~qT~ehl~il~~-lgi~~iIVVlNKiDlv 117 (614)
T PRK10512 74 GIDHALLVVACDDGVMAQTREHLAILQL-TGNPMLTVALTKADRV 117 (614)
T ss_pred cCCEEEEEEECCCCCcHHHHHHHHHHHH-cCCCeEEEEEECCccC
Confidence 567899999999863 23333332222 4444 3799999974
No 103
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=34.09 E-value=87 Score=27.46 Aligned_cols=40 Identities=25% Similarity=0.271 Sum_probs=19.8
Q ss_pred CCCeEEEEEeCcCcH--HHHHHHHHhhhhcCCCeEEEecccC
Q 022952 13 NPTEVLLVVDAMTGQ--EAAALVTTFNIEIGITGAILTKLDG 52 (289)
Q Consensus 13 ~P~ev~LVldAttgq--da~~~a~~F~~~v~i~gvIlTKlDe 52 (289)
..+-+++|+|++.+. ......+.....--..-+|+||+|.
T Consensus 94 ~aD~~llVvD~~~~~~~~~~~~~~~~~~~~~p~iiviNK~D~ 135 (213)
T cd04167 94 LSDGVVLVVDVVEGVTSNTERLIRHAILEGLPIVLVINKIDR 135 (213)
T ss_pred hCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEECccc
Confidence 456777788877664 2222222211101224466677775
No 104
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=34.04 E-value=70 Score=28.78 Aligned_cols=38 Identities=32% Similarity=0.439 Sum_probs=21.8
Q ss_pred CCeEEEEEeCcCcHH--HHHHHHHhhhhcCCC-e-EEEecccC
Q 022952 14 PTEVLLVVDAMTGQE--AAALVTTFNIEIGIT-G-AILTKLDG 52 (289)
Q Consensus 14 P~ev~LVldAttgqd--a~~~a~~F~~~v~i~-g-vIlTKlDe 52 (289)
-+-++||+|++.+.+ ...+...... .++. - +|+||+|.
T Consensus 104 aDvVllviDa~~~~~~~~~~i~~~l~~-~g~p~vi~VvnK~D~ 145 (225)
T cd01882 104 ADLVLLLIDASFGFEMETFEFLNILQV-HGFPRVMGVLTHLDL 145 (225)
T ss_pred cCEEEEEEecCcCCCHHHHHHHHHHHH-cCCCeEEEEEecccc
Confidence 477888999987652 2233333322 2333 2 37888884
No 105
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=33.99 E-value=56 Score=26.14 Aligned_cols=69 Identities=14% Similarity=0.039 Sum_probs=39.1
Q ss_pred CCeEEEEEeCcCcH---HHHHHHHHhhhh---cC-CCeEEEecccCCCCC----CccccceeccCCCeEEEe--cCCCCC
Q 022952 14 PTEVLLVVDAMTGQ---EAAALVTTFNIE---IG-ITGAILTKLDGDSRG----GAALSVKEVSGKPIKLVG--RGERME 80 (289)
Q Consensus 14 P~ev~LVldAttgq---da~~~a~~F~~~---v~-i~gvIlTKlDetarg----G~aLS~~~~t~~PI~FIg--tGQkVd 80 (289)
.+-+++|+|.+... ........+... .+ +--+++||+|-...- --........+.|+.++. +|+.++
T Consensus 72 ~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 151 (164)
T cd04139 72 GEGFLLVFSITDMESFTATAEFREQILRVKDDDNVPLLLVGNKCDLEDKRQVSSEEAANLARQWGVPYVETSAKTRQNVE 151 (164)
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEccccccccccCHHHHHHHHHHhCCeEEEeeCCCCCCHH
Confidence 36688888987654 233344444432 11 226889999974311 111233345567877776 677776
Q ss_pred CC
Q 022952 81 DL 82 (289)
Q Consensus 81 DL 82 (289)
+|
T Consensus 152 ~l 153 (164)
T cd04139 152 KA 153 (164)
T ss_pred HH
Confidence 64
No 106
>PLN02446 (5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase
Probab=33.68 E-value=1.2e+02 Score=28.80 Aligned_cols=79 Identities=19% Similarity=0.236 Sum_probs=57.7
Q ss_pred HHHHHHHhCCCeEEEEEeCc--Cc--------------HHHHHHHHHhhhhcCCCeEEEecccCCCCCCcc-----ccce
Q 022952 5 LKDVKRVLNPTEVLLVVDAM--TG--------------QEAAALVTTFNIEIGITGAILTKLDGDSRGGAA-----LSVK 63 (289)
Q Consensus 5 Lk~i~~~~~P~ev~LVldAt--tg--------------qda~~~a~~F~~~v~i~gvIlTKlDetargG~a-----LS~~ 63 (289)
++++.+...|+.+++.+|+- -| -++.+.+..|.+ .+++.+|+|=+|-+-..-|. -.+.
T Consensus 125 v~~~~~~~G~~~IvvsiD~k~~~g~~~Va~~GW~~~t~~~~~e~~~~~~~-~g~~eii~TdI~rDGtl~G~d~el~~~l~ 203 (262)
T PLN02446 125 LKDLVRLVGKQRLVLDLSCRKKDGRYYVVTDRWQKFSDLAVDEETLEFLA-AYCDEFLVHGVDVEGKRLGIDEELVALLG 203 (262)
T ss_pred HHHHHHHhCCCCEEEEEEEEecCCCEEEEECCCcccCCCCHHHHHHHHHH-hCCCEEEEEEEcCCCcccCCCHHHHHHHH
Confidence 45555555688999999986 33 267777788887 77999999999988665554 3556
Q ss_pred eccCCCeEEEecCCCCCCCCC
Q 022952 64 EVSGKPIKLVGRGERMEDLEP 84 (289)
Q Consensus 64 ~~t~~PI~FIgtGQkVdDLe~ 84 (289)
..+++||.+-|-=-.++||..
T Consensus 204 ~~~~ipVIASGGv~sleDi~~ 224 (262)
T PLN02446 204 EHSPIPVTYAGGVRSLDDLER 224 (262)
T ss_pred hhCCCCEEEECCCCCHHHHHH
Confidence 668999999885445567643
No 107
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=33.09 E-value=91 Score=26.10 Aligned_cols=41 Identities=17% Similarity=0.177 Sum_probs=22.4
Q ss_pred CCCeEEEEEeCcCcHHHHHH---HHHhhhhc----CCCeEEEecccCC
Q 022952 13 NPTEVLLVVDAMTGQEAAAL---VTTFNIEI----GITGAILTKLDGD 53 (289)
Q Consensus 13 ~P~ev~LVldAttgqda~~~---a~~F~~~v----~i~gvIlTKlDet 53 (289)
..+-++||+|++..+...+. ...+.... .+=-+|+||+|..
T Consensus 82 ~~d~vi~V~D~s~~~~~~~~~~~l~~~~~~~~~~~~p~viv~NK~Dl~ 129 (174)
T cd04153 82 NTDAVILVIDSTDRERLPLTKEELYKMLAHEDLRKAVLLVLANKQDLK 129 (174)
T ss_pred cCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCCEEEEEECCCCC
Confidence 46779999999876532221 22221101 2236777888864
No 108
>cd05844 GT1_like_7 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center
Probab=33.07 E-value=87 Score=28.57 Aligned_cols=80 Identities=18% Similarity=0.190 Sum_probs=48.3
Q ss_pred CCccccceeccCCCeEEEecCCCCCCCCCCChhHHHHHhhCCCchhHHHHHHHHhccHH-HHHHHHHH---HHhCCcChH
Q 022952 56 GGAALSVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQE-DAEEMQKK---IMSANFDFN 131 (289)
Q Consensus 56 gG~aLS~~~~t~~PI~FIgtGQkVdDLe~f~p~~la~rlLG~gDi~sLvEk~~~~~~~~-~~~~~~~k---~~~g~F~l~ 131 (289)
.|..+-=....|+||..-..|-..+-+..-. ...+...+|+..|.+.+.+.++.. ...++.++ ..+.+|+.+
T Consensus 283 ~~~~~~EA~a~G~PvI~s~~~~~~e~i~~~~----~g~~~~~~d~~~l~~~i~~l~~~~~~~~~~~~~a~~~~~~~~s~~ 358 (367)
T cd05844 283 LPVVLLEAQASGVPVVATRHGGIPEAVEDGE----TGLLVPEGDVAALAAALGRLLADPDLRARMGAAGRRRVEERFDLR 358 (367)
T ss_pred CchHHHHHHHcCCCEEEeCCCCchhheecCC----eeEEECCCCHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHCCHH
Confidence 4556666677999998655443223332211 223455678888988888877532 23333332 234579999
Q ss_pred HHHHHHHH
Q 022952 132 DFLKQTRT 139 (289)
Q Consensus 132 Df~~Q~~~ 139 (289)
...+++.+
T Consensus 359 ~~~~~l~~ 366 (367)
T cd05844 359 RQTAKLEA 366 (367)
T ss_pred HHHHHHhc
Confidence 88888764
No 109
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=33.04 E-value=43 Score=28.41 Aligned_cols=39 Identities=21% Similarity=-0.011 Sum_probs=24.5
Q ss_pred CCCeEEEEEeCcCcHH--HHHHHHHhhhhcCCCeEEEecccCC
Q 022952 13 NPTEVLLVVDAMTGQE--AAALVTTFNIEIGITGAILTKLDGD 53 (289)
Q Consensus 13 ~P~ev~LVldAttgqd--a~~~a~~F~~~v~i~gvIlTKlDet 53 (289)
+-|-+++|+|+..... ...+.+.... . ..-+|+||+|..
T Consensus 19 ~aD~il~v~D~~~~~~~~~~~i~~~~~~-k-~~ilVlNK~Dl~ 59 (171)
T cd01856 19 LVDLVIEVRDARIPLSSRNPLLEKILGN-K-PRIIVLNKADLA 59 (171)
T ss_pred hCCEEEEEeeccCccCcCChhhHhHhcC-C-CEEEEEehhhcC
Confidence 4578899999976532 1223333322 2 345999999974
No 110
>PRK14001 potassium-transporting ATPase subunit C; Provisional
Probab=32.95 E-value=33 Score=31.23 Aligned_cols=26 Identities=27% Similarity=0.303 Sum_probs=23.7
Q ss_pred hhHHhhccCCCCHHHHHHHHHHHHHH
Q 022952 198 RRKRVAQDSGKTEQQVSQLVAQLFQM 223 (289)
Q Consensus 198 R~~RIA~GSG~~~~eVn~Llk~f~~m 223 (289)
-..|||+-.|.++++|++|++++.+-
T Consensus 141 Qv~RVA~argl~~~~v~~LV~~~t~~ 166 (189)
T PRK14001 141 QAPRVAQARNISIRQVERLIEDHTDA 166 (189)
T ss_pred HHHHHHHHhCcCHHHHHHHHHHHhcC
Confidence 58999999999999999999999653
No 111
>PRK04293 adenylosuccinate synthetase; Provisional
Probab=32.71 E-value=29 Score=34.22 Aligned_cols=41 Identities=34% Similarity=0.533 Sum_probs=27.7
Q ss_pred CCCeEEEecccCCCC---CC--------c----cccceeccCCCeEEEecCCCCCC
Q 022952 41 GITGAILTKLDGDSR---GG--------A----ALSVKEVSGKPIKLVGRGERMED 81 (289)
Q Consensus 41 ~i~gvIlTKlDetar---gG--------~----aLS~~~~t~~PI~FIgtGQkVdD 81 (289)
+++++.+||+|--+. +- . +-.+-...+.||.||++|..-++
T Consensus 273 g~~~lalTklDvL~~~~~~~~~~~~LP~~a~~yi~~iE~~~~~pv~~is~Gp~r~~ 328 (333)
T PRK04293 273 GATQIAITKLDKLDKEAYGVTEYDKLPPEAKKFIEEIEEELGVPVTLISTGPELED 328 (333)
T ss_pred CCCeEEEEcceecCCccccCCchHHcCHHHHHHHHHHHHHHCCCEEEEEcCCCHHH
Confidence 789999999984221 10 1 11244567899999999987654
No 112
>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.
Probab=32.55 E-value=1.5e+02 Score=21.96 Aligned_cols=89 Identities=10% Similarity=0.177 Sum_probs=50.0
Q ss_pred HHHHHHHHhCCCeEEEEEeCcCcHHHH---HHHHHhhhhcCCCeEEEecccCCCCCCccccceeccCCC-eEEEecCCCC
Q 022952 4 ELKDVKRVLNPTEVLLVVDAMTGQEAA---ALVTTFNIEIGITGAILTKLDGDSRGGAALSVKEVSGKP-IKLVGRGERM 79 (289)
Q Consensus 4 ELk~i~~~~~P~ev~LVldAttgqda~---~~a~~F~~~v~i~gvIlTKlDetargG~aLS~~~~t~~P-I~FIgtGQkV 79 (289)
++.++.......-+++.+-+..-..+. ...+.+...+ ...+.+-++|.+... .+..-...++.| +.|+-.|+.+
T Consensus 4 ~~~~~~~~~~~~~v~v~f~~~~C~~C~~~~~~l~~l~~~~-~~~i~~~~vd~~~~~-~~~~~~~i~~~Pt~~~~~~g~~~ 81 (97)
T cd02984 4 EFEELLKSDASKLLVLHFWAPWAEPCKQMNQVFEELAKEA-FPSVLFLSIEAEELP-EISEKFEITAVPTFVFFRNGTIV 81 (97)
T ss_pred HHHHHHhhCCCCEEEEEEECCCCHHHHHHhHHHHHHHHHh-CCceEEEEEccccCH-HHHHhcCCccccEEEEEECCEEE
Confidence 344444433224455556665554333 3444444433 457888999987543 233334457778 4555677766
Q ss_pred CCCCCCChhHHHHHh
Q 022952 80 EDLEPFYPDRMAGRI 94 (289)
Q Consensus 80 dDLe~f~p~~la~rl 94 (289)
.-+.-++++.+...|
T Consensus 82 ~~~~g~~~~~l~~~~ 96 (97)
T cd02984 82 DRVSGADPKELAKKV 96 (97)
T ss_pred EEEeCCCHHHHHHhh
Confidence 667777777776543
No 113
>PTZ00141 elongation factor 1- alpha; Provisional
Probab=32.50 E-value=84 Score=31.65 Aligned_cols=69 Identities=16% Similarity=0.248 Sum_probs=39.7
Q ss_pred hCCCeEEEEEeCcCcH---------HHHHHHHHhhhhcCCCe--EEEecccCC------CCCCccccce---------ec
Q 022952 12 LNPTEVLLVVDAMTGQ---------EAAALVTTFNIEIGITG--AILTKLDGD------SRGGAALSVK---------EV 65 (289)
Q Consensus 12 ~~P~ev~LVldAttgq---------da~~~a~~F~~~v~i~g--vIlTKlDet------argG~aLS~~---------~~ 65 (289)
...|-.+||+||..|- ...+.+..-. .+++.. +++||+|.. .+.=.++.-. ..
T Consensus 107 ~~aD~ailVVda~~G~~e~~~~~~~qT~eh~~~~~-~~gi~~iiv~vNKmD~~~~~~~~~~~~~i~~~i~~~l~~~g~~~ 185 (446)
T PTZ00141 107 SQADVAILVVASTAGEFEAGISKDGQTREHALLAF-TLGVKQMIVCINKMDDKTVNYSQERYDEIKKEVSAYLKKVGYNP 185 (446)
T ss_pred hhcCEEEEEEEcCCCceecccCCCccHHHHHHHHH-HcCCCeEEEEEEccccccchhhHHHHHHHHHHHHHHHHhcCCCc
Confidence 3568899999999872 2222222222 367664 589999932 1111111111 11
Q ss_pred cCCCeEEEe--cCCCCCC
Q 022952 66 SGKPIKLVG--RGERMED 81 (289)
Q Consensus 66 t~~PI~FIg--tGQkVdD 81 (289)
.+.|+.+++ +|+++.+
T Consensus 186 ~~~~~ipiSa~~g~ni~~ 203 (446)
T PTZ00141 186 EKVPFIPISGWQGDNMIE 203 (446)
T ss_pred ccceEEEeecccCCCccc
Confidence 357888888 8999854
No 114
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=32.32 E-value=90 Score=25.31 Aligned_cols=15 Identities=13% Similarity=0.352 Sum_probs=10.5
Q ss_pred CCCeEEEEEeCcCcH
Q 022952 13 NPTEVLLVVDAMTGQ 27 (289)
Q Consensus 13 ~P~ev~LVldAttgq 27 (289)
..+-++||+|++...
T Consensus 73 ~~~~~v~vvd~~~~~ 87 (167)
T cd04160 73 ECHAIIYVIDSTDRE 87 (167)
T ss_pred CCCEEEEEEECchHH
Confidence 456788888887654
No 115
>PRK13788 adenylosuccinate synthetase; Provisional
Probab=32.21 E-value=23 Score=35.81 Aligned_cols=14 Identities=57% Similarity=0.700 Sum_probs=12.0
Q ss_pred CCCeEEEecccCCC
Q 022952 41 GITGAILTKLDGDS 54 (289)
Q Consensus 41 ~i~gvIlTKlDeta 54 (289)
+++.+.+||+|--+
T Consensus 316 g~~~lalTkLDvL~ 329 (404)
T PRK13788 316 GFDGLVLTKLDVLS 329 (404)
T ss_pred CCCeEEEecchhcC
Confidence 79999999999644
No 116
>cd03807 GT1_WbnK_like This family is most closely related to the GT1 family of glycosyltransferases. WbnK in Shigella dysenteriae has been shown to be involved in the type 7 O-antigen biosynthesis.
Probab=32.05 E-value=3.5e+02 Score=23.65 Aligned_cols=79 Identities=14% Similarity=0.214 Sum_probs=47.6
Q ss_pred CCccccceeccCCCeEEEecCCCCCCCCCCChhHHHHHhhCCCchhHHHHHHHHhcc-HHHHHHHHHH---HHhCCcChH
Q 022952 56 GGAALSVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQ-QEDAEEMQKK---IMSANFDFN 131 (289)
Q Consensus 56 gG~aLS~~~~t~~PI~FIgtGQkVdDLe~f~p~~la~rlLG~gDi~sLvEk~~~~~~-~~~~~~~~~k---~~~g~F~l~ 131 (289)
.|..+-=+...|+||...-+|..-+-+.. ...++..+|...|.+.+...++ .+...++.++ .....|+.+
T Consensus 281 ~~~~~~Ea~a~g~PvI~~~~~~~~e~~~~------~g~~~~~~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~s~~ 354 (365)
T cd03807 281 FPNVLLEAMACGLPVVATDVGDNAELVGD------TGFLVPPGDPEALAEAIEALLADPALRQALGEAARERIEENFSIE 354 (365)
T ss_pred CCcHHHHHHhcCCCEEEcCCCChHHHhhc------CCEEeCCCCHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHH
Confidence 45555566778999876443322121211 2344555788888888888764 2333333333 334579999
Q ss_pred HHHHHHHHH
Q 022952 132 DFLKQTRTV 140 (289)
Q Consensus 132 Df~~Q~~~i 140 (289)
...+++..+
T Consensus 355 ~~~~~~~~~ 363 (365)
T cd03807 355 AMVEAYEEL 363 (365)
T ss_pred HHHHHHHHH
Confidence 999888775
No 117
>PLN03126 Elongation factor Tu; Provisional
Probab=31.90 E-value=87 Score=32.02 Aligned_cols=42 Identities=19% Similarity=0.313 Sum_probs=27.6
Q ss_pred hCCCeEEEEEeCcCcH--HHHHHHHHhhhhcCCCe--EEEecccCCC
Q 022952 12 LNPTEVLLVVDAMTGQ--EAAALVTTFNIEIGITG--AILTKLDGDS 54 (289)
Q Consensus 12 ~~P~ev~LVldAttgq--da~~~a~~F~~~v~i~g--vIlTKlDeta 54 (289)
...|-.+||+||..|- ...+.+.... ..++.. +++||+|...
T Consensus 166 ~~aD~ailVVda~~G~~~qt~e~~~~~~-~~gi~~iIvvvNK~Dl~~ 211 (478)
T PLN03126 166 AQMDGAILVVSGADGPMPQTKEHILLAK-QVGVPNMVVFLNKQDQVD 211 (478)
T ss_pred hhCCEEEEEEECCCCCcHHHHHHHHHHH-HcCCCeEEEEEecccccC
Confidence 3578899999999884 2333333333 357763 4699999743
No 118
>PRK11302 DNA-binding transcriptional regulator HexR; Provisional
Probab=31.87 E-value=47 Score=30.36 Aligned_cols=57 Identities=14% Similarity=0.304 Sum_probs=43.8
Q ss_pred HHHHHHHHhCCCHHhhc-------CccccCCCchhhHHhhccCCCCHHHHHHHHHH-----HHHHHHHHHH
Q 022952 171 LKIMEAMIEAMTPEERE-------KPELLAESPVRRKRVAQDSGKTEQQVSQLVAQ-----LFQMRVRMKN 229 (289)
Q Consensus 171 ~k~~~~Ii~SMT~~Er~-------nP~li~~~~SR~~RIA~GSG~~~~eVn~Llk~-----f~~m~kmmk~ 229 (289)
+.++....++||+.|+. ||+.+.. -=+.-||+-+|+++.-|.+|.+. |.+++..+.+
T Consensus 4 ~~~i~~~~~~Lt~~e~~Ia~yil~n~~~v~~--~si~~lA~~~~vS~aTv~Rf~kklG~~gf~e~k~~l~~ 72 (284)
T PRK11302 4 LEKIQSRLEHLSKSERKVAEVILASPQTAIH--SSIATLAKMANVSEPTVNRFCRSLDTKGFPDFKLHLAQ 72 (284)
T ss_pred HHHHHHHHhhCCHHHHHHHHHHHhCHHHHHh--cCHHHHHHHhCCCHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 45677888899999984 8865521 24889999999999999999876 5666655554
No 119
>PF02669 KdpC: K+-transporting ATPase, c chain; InterPro: IPR003820 Kdp, the high affinity ATP-driven K+-transport system of Escherichia coli, is a complex of the membrane-bound subunits KdpA, KdpB, KdpC and the small peptide KdpF. KdpC forms strong interactions with the KdpA subunit, serving to assemble and stabilise the Kdp complex []. It has been suggested that KdpC could be one of the connecting links between the energy providing subunit KdpB and the K+- transporting subunit KdpA []. The K+ transport system actively transports K+ ions via ATP hydrolysis.; GO: 0008556 potassium-transporting ATPase activity, 0006813 potassium ion transport, 0016020 membrane
Probab=31.87 E-value=37 Score=30.86 Aligned_cols=26 Identities=27% Similarity=0.376 Sum_probs=23.7
Q ss_pred hhHHhhccCCCCHHHHHHHHHHHHHH
Q 022952 198 RRKRVAQDSGKTEQQVSQLVAQLFQM 223 (289)
Q Consensus 198 R~~RIA~GSG~~~~eVn~Llk~f~~m 223 (289)
-..|||+-.|.++++|++|++++.+-
T Consensus 140 Qv~RVA~argl~~~~v~~li~~~t~~ 165 (188)
T PF02669_consen 140 QVPRVAKARGLSEEEVEALIDKHTEG 165 (188)
T ss_pred HHHHHHHHhCcCHHHHHHHHHHHhcC
Confidence 58899999999999999999998664
No 120
>cd04732 HisA HisA. Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene.
Probab=31.81 E-value=1.5e+02 Score=26.15 Aligned_cols=69 Identities=19% Similarity=0.366 Sum_probs=44.0
Q ss_pred HHHHHHHhCCCeEEEEEeCcC------------cHHHHHHHHHhhhhcCCCeEEEecccCCCCC-Ccccc----ceeccC
Q 022952 5 LKDVKRVLNPTEVLLVVDAMT------------GQEAAALVTTFNIEIGITGAILTKLDGDSRG-GAALS----VKEVSG 67 (289)
Q Consensus 5 Lk~i~~~~~P~ev~LVldAtt------------gqda~~~a~~F~~~v~i~gvIlTKlDetarg-G~aLS----~~~~t~ 67 (289)
+.++.+....+.+++.+|.-. ..+..+.++.+.+ .+.+.+++|-++.+... |.-+. ++..++
T Consensus 112 ~~~i~~~~g~~~i~~sid~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ga~~iii~~~~~~g~~~g~~~~~i~~i~~~~~ 190 (234)
T cd04732 112 VKELLKEYGGERIVVGLDAKDGKVATKGWLETSEVSLEELAKRFEE-LGVKAIIYTDISRDGTLSGPNFELYKELAAATG 190 (234)
T ss_pred HHHHHHHcCCceEEEEEEeeCCEEEECCCeeecCCCHHHHHHHHHH-cCCCEEEEEeecCCCccCCCCHHHHHHHHHhcC
Confidence 455555555567888888432 2356678888876 89999999977543332 22233 344457
Q ss_pred CCeEEEe
Q 022952 68 KPIKLVG 74 (289)
Q Consensus 68 ~PI~FIg 74 (289)
.||.+-|
T Consensus 191 ipvi~~G 197 (234)
T cd04732 191 IPVIASG 197 (234)
T ss_pred CCEEEec
Confidence 8877766
No 121
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=31.53 E-value=98 Score=27.02 Aligned_cols=41 Identities=15% Similarity=0.126 Sum_probs=24.0
Q ss_pred CCCeEEEEEeCcCc---HHHHHHHHHhhh-hcCCCeEEEecccCC
Q 022952 13 NPTEVLLVVDAMTG---QEAAALVTTFNI-EIGITGAILTKLDGD 53 (289)
Q Consensus 13 ~P~ev~LVldAttg---qda~~~a~~F~~-~v~i~gvIlTKlDet 53 (289)
..+-++||+|++.+ .+..+....... .++.--+++||+|-.
T Consensus 106 ~~D~~llVvd~~~~~~~~~t~~~l~~~~~~~~~~iiivvNK~Dl~ 150 (203)
T cd01888 106 VMDGALLLIAANEPCPQPQTSEHLAALEIMGLKHIIIVQNKIDLV 150 (203)
T ss_pred cCCEEEEEEECCCCCCCcchHHHHHHHHHcCCCcEEEEEEchhcc
Confidence 46789999999863 222332222221 122234699999974
No 122
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=31.27 E-value=1.1e+02 Score=23.80 Aligned_cols=41 Identities=17% Similarity=0.041 Sum_probs=23.6
Q ss_pred CCCeEEEEEeCcCcHHHH---HHHHHhhh-----hcCCCeEEEecccCCC
Q 022952 13 NPTEVLLVVDAMTGQEAA---ALVTTFNI-----EIGITGAILTKLDGDS 54 (289)
Q Consensus 13 ~P~ev~LVldAttgqda~---~~a~~F~~-----~v~i~gvIlTKlDeta 54 (289)
..+-+++|+|++...... .....+.. .+| --+|+||.|...
T Consensus 67 ~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p-~iiv~nK~D~~~ 115 (159)
T cd04159 67 GVNAIVYVVDAADRTALEAAKNELHDLLEKPSLEGIP-LLVLGNKNDLPG 115 (159)
T ss_pred cCCEEEEEEECCCHHHHHHHHHHHHHHHcChhhcCCC-EEEEEeCccccC
Confidence 567899999998754322 22222211 122 246789999754
No 123
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=31.26 E-value=99 Score=25.95 Aligned_cols=41 Identities=17% Similarity=0.043 Sum_probs=25.1
Q ss_pred CCCeEEEEEeCcCcH--H-HHHHHHHhhhhc----CCCeEEEecccCC
Q 022952 13 NPTEVLLVVDAMTGQ--E-AAALVTTFNIEI----GITGAILTKLDGD 53 (289)
Q Consensus 13 ~P~ev~LVldAttgq--d-a~~~a~~F~~~v----~i~gvIlTKlDet 53 (289)
..+-++||.|++..+ + ..+....+.... .+--+|.||.|..
T Consensus 72 ~ad~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iilVgnK~Dl~ 119 (170)
T cd04108 72 GAQAIIIVFDLTDVASLEHTRQWLEDALKENDPSSVLLFLVGTKKDLS 119 (170)
T ss_pred CCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEChhcC
Confidence 567799999998754 2 223343332211 1236899999974
No 124
>PRK00726 murG undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase; Provisional
Probab=31.08 E-value=1.3e+02 Score=27.91 Aligned_cols=85 Identities=15% Similarity=0.154 Sum_probs=52.0
Q ss_pred CCccccceeccCCCeEEEecCCCCCCCCCCChhHHHHHh----hCCCc--hhHHHHHHHHhcc-HHHHHHHHHHHHh-C-
Q 022952 56 GGAALSVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRI----LGMGD--VLSFVEKAQEVMQ-QEDAEEMQKKIMS-A- 126 (289)
Q Consensus 56 gG~aLS~~~~t~~PI~FIgtGQkVdDLe~f~p~~la~rl----LG~gD--i~sLvEk~~~~~~-~~~~~~~~~k~~~-g- 126 (289)
|++.+-=+...|+|+..+..|...++-....++.+++.= +...| ...|.+.+++.++ ++..+++.+.-.+ +
T Consensus 261 g~~~~~Ea~~~g~Pvv~~~~~~~~~~~~~~~~~~i~~~~~g~~~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~~~~~~~~ 340 (357)
T PRK00726 261 GASTVAELAAAGLPAILVPLPHAADDHQTANARALVDAGAALLIPQSDLTPEKLAEKLLELLSDPERLEAMAEAARALGK 340 (357)
T ss_pred CHHHHHHHHHhCCCEEEecCCCCCcCcHHHHHHHHHHCCCEEEEEcccCCHHHHHHHHHHHHcCHHHHHHHHHHHHhcCC
Confidence 445555567899999988876555433333455555432 22345 7888888888774 3334445444433 3
Q ss_pred CcChHHHHHHHHHH
Q 022952 127 NFDFNDFLKQTRTV 140 (289)
Q Consensus 127 ~F~l~Df~~Q~~~i 140 (289)
.|+..+..+++..+
T Consensus 341 ~~~~~~~~~~~~~~ 354 (357)
T PRK00726 341 PDAAERLADLIEEL 354 (357)
T ss_pred cCHHHHHHHHHHHH
Confidence 57777777776654
No 125
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=31.02 E-value=88 Score=32.66 Aligned_cols=70 Identities=21% Similarity=0.257 Sum_probs=39.2
Q ss_pred hCCCeEEEEEeCcCcH--HHHHHHHHhhhhcCCC--eEEEecccCCCCCCc------cccceec----cCCCeEEEe--c
Q 022952 12 LNPTEVLLVVDAMTGQ--EAAALVTTFNIEIGIT--GAILTKLDGDSRGGA------ALSVKEV----SGKPIKLVG--R 75 (289)
Q Consensus 12 ~~P~ev~LVldAttgq--da~~~a~~F~~~v~i~--gvIlTKlDetargG~------aLS~~~~----t~~PI~FIg--t 75 (289)
.+.|-++||+||+.|. ...+.+.... .+++. -+++||+|....--- +-.+... .+.|+..++ +
T Consensus 72 ~~aD~aILVVDa~~G~~~qT~ehl~il~-~lgi~~iIVVlNK~Dlv~~~~~~~~~~ei~~~l~~~~~~~~~~ii~vSA~t 150 (581)
T TIGR00475 72 GGIDAALLVVDADEGVMTQTGEHLAVLD-LLGIPHTIVVITKADRVNEEEIKRTEMFMKQILNSYIFLKNAKIFKTSAKT 150 (581)
T ss_pred ccCCEEEEEEECCCCCcHHHHHHHHHHH-HcCCCeEEEEEECCCCCCHHHHHHHHHHHHHHHHHhCCCCCCcEEEEeCCC
Confidence 4678899999999852 2233322222 24444 678899997432110 0011111 157777776 6
Q ss_pred CCCCCCC
Q 022952 76 GERMEDL 82 (289)
Q Consensus 76 GQkVdDL 82 (289)
|+.++++
T Consensus 151 G~GI~eL 157 (581)
T TIGR00475 151 GQGIGEL 157 (581)
T ss_pred CCCchhH
Confidence 7777654
No 126
>cd03801 GT1_YqgM_like This family is most closely related to the GT1 family of glycosyltransferases and named after YqgM in Bacillus licheniformis about which little is known. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold.
Probab=30.77 E-value=3.3e+02 Score=23.55 Aligned_cols=92 Identities=18% Similarity=0.199 Sum_probs=50.2
Q ss_pred eEEEecccCCCCCCccccceeccCCCeEEEecCCCCCCCCCCChhHHHHHhhCCCchhHHHHHHHHhcc-HHHHHHHHHH
Q 022952 44 GAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQ-QEDAEEMQKK 122 (289)
Q Consensus 44 gvIlTKlDetargG~aLS~~~~t~~PI~FIgtGQkVdDLe~f~p~~la~rlLG~gDi~sLvEk~~~~~~-~~~~~~~~~k 122 (289)
-+|++-.. ...|..+-=....|+||.-.-.|---+-++. .-...+....|...|.+.+...++ .+...++.++
T Consensus 278 i~i~~~~~--~~~~~~~~Ea~~~g~pvI~~~~~~~~~~~~~----~~~g~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~ 351 (374)
T cd03801 278 VFVLPSLY--EGFGLVLLEAMAAGLPVVASDVGGIPEVVED----GETGLLVPPGDPEALAEAILRLLDDPELRRRLGEA 351 (374)
T ss_pred EEEecchh--ccccchHHHHHHcCCcEEEeCCCChhHHhcC----CcceEEeCCCCHHHHHHHHHHHHcChHHHHHHHHH
Confidence 34444333 2234444445668999875443211122211 111234445678888888888663 3334455555
Q ss_pred HH---hCCcChHHHHHHHHHHH
Q 022952 123 IM---SANFDFNDFLKQTRTVA 141 (289)
Q Consensus 123 ~~---~g~F~l~Df~~Q~~~i~ 141 (289)
.. ...|+.+.+.+++..+.
T Consensus 352 ~~~~~~~~~~~~~~~~~~~~~~ 373 (374)
T cd03801 352 ARERVAERFSWDRVAARTEEVY 373 (374)
T ss_pred HHHHHHHhcCHHHHHHHHHHhh
Confidence 43 56799998888877653
No 127
>TIGR00379 cobB cobyrinic acid a,c-diamide synthase. This model describes cobyrinic acid a,c-diamide synthase, the cobB (cbiA in Salmonella) protein of cobalamin biosynthesis. It is responsible for the amidation of carboxylic groups at positions A and C of either cobyrinic acid or hydrogenobrynic acid. NH(2) groups are provided by glutamine and one molecule of ATP hydrogenolyzed for each amidation.
Probab=30.45 E-value=88 Score=31.43 Aligned_cols=39 Identities=23% Similarity=0.526 Sum_probs=27.5
Q ss_pred CeEEEEEeCcC-cHHHHHH---HHHhhhhcCCCeEEEecccCC
Q 022952 15 TEVLLVVDAMT-GQEAAAL---VTTFNIEIGITGAILTKLDGD 53 (289)
Q Consensus 15 ~ev~LVldAtt-gqda~~~---a~~F~~~v~i~gvIlTKlDet 53 (289)
.-++||+|+.+ ...+..+ +..|...+.+-|+|+++++.+
T Consensus 111 ~pVILV~~~~~~~~t~~al~~~~~~~~~~i~i~GvIlN~v~~~ 153 (449)
T TIGR00379 111 APIVLVMNCQRLSRSAAAIVLGYRSFDPGVKLKGVILNRVGSE 153 (449)
T ss_pred CCEEEEECCchHHHHHHHHHHHHHhhCCCCCEEEEEEECCCCH
Confidence 57999999875 2233333 334565688999999999864
No 128
>PF00667 FAD_binding_1: FAD binding domain; InterPro: IPR003097 This domain is found in sulphite reductase, NADPH cytochrome P450 reductase, nitric oxide synthase and methionine synthase reductase. Flavoprotein pyridine nucleotide cytochrome reductases [] (FPNCR) catalyse the interchange of reducing equivalents between one-electron carriers and the two-electron-carrying nicotinamide dinucleotides. The enzymes include ferredoxin:NADP+reductases (FNR) [], plant and fungal NAD(P)H:nitrate reductases [, ], NADH:cytochrome b5 reductases [], NADPH:P450 reductases [], NADPH:sulphite reductases [], nitric oxide synthases [], phthalate dioxygenase reductase [], and various other flavoproteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3QFR_B 3FJO_A 3QFC_B 3QE2_B 3QFS_A 3QFT_A 2B5O_B 2QTZ_A 2QTL_A 2BPO_B ....
Probab=30.07 E-value=1.8e+02 Score=25.97 Aligned_cols=134 Identities=14% Similarity=0.166 Sum_probs=69.0
Q ss_pred CCCeEEEEEeCcCcHHHHHHHHHhhhhcCCCeEEE-ecccCCCCCCccccceeccCCCeEEEecCCCCCCCCCCChhHHH
Q 022952 13 NPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAIL-TKLDGDSRGGAALSVKEVSGKPIKLVGRGERMEDLEPFYPDRMA 91 (289)
Q Consensus 13 ~P~ev~LVldAttgqda~~~a~~F~~~v~i~gvIl-TKlDetargG~aLS~~~~t~~PI~FIgtGQkVdDLe~f~p~~la 91 (289)
+|-+.+-|+.-+.-+++...++.|+- ..+..|. ...+.. .+...-...|+..-..=.+.=||...-...+.
T Consensus 43 ~pGD~l~V~P~N~~~~V~~~l~~lgl--~~d~~v~~~~~~~~------~~~~~~~~~~~tl~~~l~~~~Di~~~p~~~~l 114 (219)
T PF00667_consen 43 QPGDHLGVYPPNDPEEVERLLKRLGL--DPDEPVTLKPKEQN------NSVKPPFPSPITLRDLLTHYLDITSPPSRSFL 114 (219)
T ss_dssp -TT-EEEEE-SSEHHHHHHHHHHHTS--GTTSEEEEEESSTT------SSCCSSSSSSEEHHHHHHHTB-TSSB--HHHH
T ss_pred cCCCEEEEEccCCHHHHHHHHHHhCC--CcceEEEEEecccc------cccccccccceeeeeeeeeeeeccccccccee
Confidence 57778888888877778788888764 3344444 444433 22222233332211111122245554445555
Q ss_pred HHhhCCCchhHHHHHHHHhccHHHHHHHHHHHHhCCcChHHHHHHHHHHHhcCchHHHHhcCCCC
Q 022952 92 GRILGMGDVLSFVEKAQEVMQQEDAEEMQKKIMSANFDFNDFLKQTRTVARMGSMSRVIGMIPGM 156 (289)
Q Consensus 92 ~rlLG~gDi~sLvEk~~~~~~~~~~~~~~~k~~~g~F~l~Df~~Q~~~i~kmG~l~~i~~miPG~ 156 (289)
..|-..-.-..--++.++..+.+.++.+.+-+....-|+-|+++.+..+ ++ |+..+++++|-+
T Consensus 115 ~~la~~~~~~~~k~~L~~l~~~~~~~~~~~~~~~~~~t~~dil~~fps~-~~-pl~~ll~~lp~l 177 (219)
T PF00667_consen 115 RALAEFATDEEEKERLLELASDEGKDDYKDYIWRERRTLLDILEDFPSC-KP-PLEELLELLPPL 177 (219)
T ss_dssp HHHHCTBSSHHHHHHHHHCTSSHHHHHHHHHTTTTTHCHHHHHHHSTTB-TC--HHHHHHHS-B-
T ss_pred eeeeecCCCHHHHHHHHHhcchhhhhhhhhhhhcccCcHHHHHhhCccc-CC-CHHHhhhhCCCC
Confidence 5555543333334455555554444455555445667888888877654 44 888999999854
No 129
>PLN00043 elongation factor 1-alpha; Provisional
Probab=29.97 E-value=87 Score=31.59 Aligned_cols=41 Identities=17% Similarity=0.319 Sum_probs=25.2
Q ss_pred hCCCeEEEEEeCcCcH---------HHHHHHHHhhhhcCCCe-E-EEecccCC
Q 022952 12 LNPTEVLLVVDAMTGQ---------EAAALVTTFNIEIGITG-A-ILTKLDGD 53 (289)
Q Consensus 12 ~~P~ev~LVldAttgq---------da~~~a~~F~~~v~i~g-v-IlTKlDet 53 (289)
...|-.+||+||+.|. ...+.+.- ...+++.. + ++||+|..
T Consensus 107 ~~aD~aIlVVda~~G~~e~g~~~~~qT~eh~~~-~~~~gi~~iIV~vNKmD~~ 158 (447)
T PLN00043 107 SQADCAVLIIDSTTGGFEAGISKDGQTREHALL-AFTLGVKQMICCCNKMDAT 158 (447)
T ss_pred hhccEEEEEEEcccCceecccCCCchHHHHHHH-HHHcCCCcEEEEEEcccCC
Confidence 4578899999999872 22222221 12357754 3 47999964
No 130
>PRK14101 bifunctional glucokinase/RpiR family transcriptional regulator; Provisional
Probab=29.89 E-value=67 Score=33.60 Aligned_cols=91 Identities=18% Similarity=0.332 Sum_probs=63.9
Q ss_pred HHHHHhcCchHHHHhcCCC---------C-C--CCCchhhH-----HhHHHHHHHHHHHhCCCHHhhc-------Ccccc
Q 022952 137 TRTVARMGSMSRVIGMIPG---------M-G--KITPAQVR-----EAEKSLKIMEAMIEAMTPEERE-------KPELL 192 (289)
Q Consensus 137 ~~~i~kmG~l~~i~~miPG---------~-~--~~~~~~~~-----~~e~~~k~~~~Ii~SMT~~Er~-------nP~li 192 (289)
.+.+...|+++.++.-||= + | ...-+++. ....-+.++....++||+.||. ||+-+
T Consensus 293 ~~~f~~kg~~~~~~~~ipv~~i~~~~~~l~Gaa~~~~~~~~~~~~~~~~~l~~~I~~~~~~Lt~~E~~IA~yIl~n~~~v 372 (638)
T PRK14101 293 RARFEAKGRFEAYLANIPTYLITAEYPAFLGVSAILAEQLSNRTGGASSAVFERIRQMRDALTPAERRVADLALNHPRSI 372 (638)
T ss_pred HHHHHhCCChHHHHhcCCEEEEeCCChhHHHHHHHHHHHhccccCCchHHHHHHHHHHHhhcCHHHHHHHHHHHhCHHHH
Confidence 3556679999999999982 2 1 00001111 1234478899999999999994 88644
Q ss_pred CCCchhhHHhhccCCCCHHHHHHHHHH-----HHHHHHHHHH
Q 022952 193 AESPVRRKRVAQDSGKTEQQVSQLVAQ-----LFQMRVRMKN 229 (289)
Q Consensus 193 ~~~~SR~~RIA~GSG~~~~eVn~Llk~-----f~~m~kmmk~ 229 (289)
. ..-+.-+|+=+|+|+.-|.+|.+. |..++..+++
T Consensus 373 ~--~~si~eLA~~~~vS~aTV~Rf~kkLGf~Gf~efK~~L~~ 412 (638)
T PRK14101 373 I--NDPIVDIARKADVSQPTVIRFCRSLGCQGLSDFKLKLAT 412 (638)
T ss_pred H--hccHHHHHHHhCCCHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 2 145899999999999999999876 6677665553
No 131
>TIGR01597 PYST-B Plasmodium yoelii subtelomeric family PYST-B. This model represents a paralogous family of Plasmodium yoelii genes preferentially located in the subtelomeric regions of the chromosomes. There are no obvious homologs to these genes in any other organism.
Probab=29.88 E-value=49 Score=31.38 Aligned_cols=75 Identities=19% Similarity=0.432 Sum_probs=45.8
Q ss_pred hCCcChHHHHHHHHHHHhcCchHHHHhcCCCCCCCCchhhHHhHHHHHHHHHHHhCCCHHhhcC---ccccCCCchhhHH
Q 022952 125 SANFDFNDFLKQTRTVARMGSMSRVIGMIPGMGKITPAQVREAEKSLKIMEAMIEAMTPEEREK---PELLAESPVRRKR 201 (289)
Q Consensus 125 ~g~F~l~Df~~Q~~~i~kmG~l~~i~~miPG~~~~~~~~~~~~e~~~k~~~~Ii~SMT~~Er~n---P~li~~~~SR~~R 201 (289)
..+|||+|||+-.-.+. ..+-+ -.++++++..+..||+|=-++-.+| |++=+ -.++-+
T Consensus 52 dnqfdLn~FY~Stlsla---------~q~nd--------~~~ddeEi~~lrniidShikkhkenntl~dLnn-vd~ktk- 112 (255)
T TIGR01597 52 DNQFDLNEFYQSTLSLA---------NQFND--------CNDDDKEIAHLRNIIDSHIKKHKERNTLPDLNN-VDKKTK- 112 (255)
T ss_pred CccccHHHHHHHHHHHH---------HHhcc--------ccCchHHHHHHHHhHHHHHHhhhccccCccccc-ccHHHH-
Confidence 45899999998443322 22111 1245678999999999988777765 44322 123333
Q ss_pred hhccCCCCHHHHHHHHHHHHHHHHHH
Q 022952 202 VAQDSGKTEQQVSQLVAQLFQMRVRM 227 (289)
Q Consensus 202 IA~GSG~~~~eVn~Llk~f~~m~kmm 227 (289)
.=|++|-+..+..++-.
T Consensus 113 ---------klI~el~keLee~kKel 129 (255)
T TIGR01597 113 ---------KLINKLQKELEELKKEL 129 (255)
T ss_pred ---------HHHHHHHHHHHHHHHHh
Confidence 34667777776665443
No 132
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=29.76 E-value=70 Score=26.28 Aligned_cols=42 Identities=12% Similarity=-0.039 Sum_probs=24.9
Q ss_pred CCCeEEEEEeCcCcHH---HHHHHHHhhhhc------CCCeEEEecccCCC
Q 022952 13 NPTEVLLVVDAMTGQE---AAALVTTFNIEI------GITGAILTKLDGDS 54 (289)
Q Consensus 13 ~P~ev~LVldAttgqd---a~~~a~~F~~~v------~i~gvIlTKlDeta 54 (289)
..+-++||.|.+..+. +.+..+.+.+.. -+--+|.||.|...
T Consensus 72 ~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~ 122 (165)
T cd04140 72 KGHAFILVYSVTSKQSLEELKPIYELICEIKGNNIEKIPIMLVGNKCDESH 122 (165)
T ss_pred cCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCCEEEEEECccccc
Confidence 4577899999988763 222223232211 12358899999743
No 133
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=29.67 E-value=74 Score=25.77 Aligned_cols=69 Identities=13% Similarity=0.061 Sum_probs=35.9
Q ss_pred CCCeEEEEEeCcCcH---HHHHHHHHhhhhc----CCCeEEEecccCCCCCC----ccccceeccCCCeEEEe--cCCCC
Q 022952 13 NPTEVLLVVDAMTGQ---EAAALVTTFNIEI----GITGAILTKLDGDSRGG----AALSVKEVSGKPIKLVG--RGERM 79 (289)
Q Consensus 13 ~P~ev~LVldAttgq---da~~~a~~F~~~v----~i~gvIlTKlDetargG----~aLS~~~~t~~PI~FIg--tGQkV 79 (289)
+.+-+++|.|.+... ++.+....+.... -+--+|.||.|...... -+.......+.|+..++ +|+.|
T Consensus 72 ~ad~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piviv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v 151 (163)
T cd04176 72 NGQGFIVVYSLVNQQTFQDIKPMRDQIVRVKGYEKVPIILVGNKVDLESEREVSSAEGRALAEEWGCPFMETSAKSKTMV 151 (163)
T ss_pred hCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhcCccCHHHHHHHHHHhCCEEEEecCCCCCCH
Confidence 457788999998875 3333333443211 12357899999743211 11222233455655544 35555
Q ss_pred CC
Q 022952 80 ED 81 (289)
Q Consensus 80 dD 81 (289)
++
T Consensus 152 ~~ 153 (163)
T cd04176 152 NE 153 (163)
T ss_pred HH
Confidence 43
No 134
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=29.65 E-value=1.6e+02 Score=27.24 Aligned_cols=54 Identities=19% Similarity=0.128 Sum_probs=31.3
Q ss_pred HHHHHHHhCCCeEEEEEeCcCc---HHHHHHHHHhhhhcC-----CCeEEEecccCCCCCCc
Q 022952 5 LKDVKRVLNPTEVLLVVDAMTG---QEAAALVTTFNIEIG-----ITGAILTKLDGDSRGGA 58 (289)
Q Consensus 5 Lk~i~~~~~P~ev~LVldAttg---qda~~~a~~F~~~v~-----i~gvIlTKlDetargG~ 58 (289)
++.+.....++-+++|...... .....+++.+.+.++ ..-+|+||.|.....|-
T Consensus 106 I~~~l~~~~idvIL~V~rlD~~r~~~~d~~llk~I~e~fG~~i~~~~ivV~T~~d~~~p~~~ 167 (249)
T cd01853 106 IKRYLKKKTPDVVLYVDRLDMYRRDYLDLPLLRAITDSFGPSIWRNAIVVLTHAASSPPDGL 167 (249)
T ss_pred HHHHHhccCCCEEEEEEcCCCCCCCHHHHHHHHHHHHHhChhhHhCEEEEEeCCccCCCCCC
Confidence 4444443456777777644432 222344555544333 56789999999876664
No 135
>PRK00089 era GTPase Era; Reviewed
Probab=29.50 E-value=1.3e+02 Score=27.59 Aligned_cols=42 Identities=21% Similarity=0.112 Sum_probs=24.8
Q ss_pred hCCCeEEEEEeCcCc--HHHHHHHHHhhhhcCCCeEEEecccCC
Q 022952 12 LNPTEVLLVVDAMTG--QEAAALVTTFNIEIGITGAILTKLDGD 53 (289)
Q Consensus 12 ~~P~ev~LVldAttg--qda~~~a~~F~~~v~i~gvIlTKlDet 53 (289)
...|-++||+|++.+ .....+++.....=-+.-+|+||+|..
T Consensus 83 ~~~D~il~vvd~~~~~~~~~~~i~~~l~~~~~pvilVlNKiDl~ 126 (292)
T PRK00089 83 KDVDLVLFVVDADEKIGPGDEFILEKLKKVKTPVILVLNKIDLV 126 (292)
T ss_pred hcCCEEEEEEeCCCCCChhHHHHHHHHhhcCCCEEEEEECCcCC
Confidence 356789999999873 233333443332112456778888874
No 136
>PRK00315 potassium-transporting ATPase subunit C; Reviewed
Probab=29.48 E-value=40 Score=30.86 Aligned_cols=26 Identities=38% Similarity=0.278 Sum_probs=23.7
Q ss_pred hhHHhhccCCCCHHHHHHHHHHHHHH
Q 022952 198 RRKRVAQDSGKTEQQVSQLVAQLFQM 223 (289)
Q Consensus 198 R~~RIA~GSG~~~~eVn~Llk~f~~m 223 (289)
-..|||+-.|.++++|.+|++++.+-
T Consensus 141 Qv~RVA~argl~~~~v~~LI~~~t~~ 166 (193)
T PRK00315 141 QIPRVAAARQLPVEQVAQLVAAYTQG 166 (193)
T ss_pred HHHHHHHHhCcCHHHHHHHHHHHhcC
Confidence 58999999999999999999999653
No 137
>TIGR00681 kdpC K+-transporting ATPase, C subunit. This chain has a single predicted transmembrane region near the amino end. It is part of a K+-transport ATPase that contains two other membrane-bound subunits, KdpA and KdpB, and a small subunit KdpF. KdpA is the K+-translocating subunit, KdpB the ATP-hydrolyzing subunit. During assembly of the complex, KdpA and KdpC bind to each other. This interaction is thought to stabilize the complex [PubMed:9858692]. Data indicates that KdpC might connect the KdpA, the K+-transporting subunit, to KdpB, the ATP-hydrolyzing (energy providing) subunit [PubMed:9858692].
Probab=29.34 E-value=42 Score=30.57 Aligned_cols=26 Identities=23% Similarity=0.250 Sum_probs=23.8
Q ss_pred hhHHhhccCCCCHHHHHHHHHHHHHH
Q 022952 198 RRKRVAQDSGKTEQQVSQLVAQLFQM 223 (289)
Q Consensus 198 R~~RIA~GSG~~~~eVn~Llk~f~~m 223 (289)
-..|||+-.|.++++|++|++++.+-
T Consensus 139 Qv~RVA~argl~~~~v~~LI~~~t~~ 164 (187)
T TIGR00681 139 QFPRVAKARNISPQQLQSLITKHTEG 164 (187)
T ss_pred HHHHHHHHhCcCHHHHHHHHHHHhcC
Confidence 68999999999999999999999653
No 138
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=29.29 E-value=1e+02 Score=25.40 Aligned_cols=40 Identities=23% Similarity=0.169 Sum_probs=22.3
Q ss_pred CCCeEEEEEeCcCcH--HHHHHHHHhh-hhcCCCeEEEecccCC
Q 022952 13 NPTEVLLVVDAMTGQ--EAAALVTTFN-IEIGITGAILTKLDGD 53 (289)
Q Consensus 13 ~P~ev~LVldAttgq--da~~~a~~F~-~~v~i~gvIlTKlDet 53 (289)
..+-++||+|++.+. +......... ..++ --+|+||+|..
T Consensus 90 ~ad~~i~v~D~~~~~~~~~~~~~~~~~~~~~~-iiiv~NK~Dl~ 132 (179)
T cd01890 90 ACEGALLLVDATQGVEAQTLANFYLALENNLE-IIPVINKIDLP 132 (179)
T ss_pred hcCeEEEEEECCCCccHhhHHHHHHHHHcCCC-EEEEEECCCCC
Confidence 457788999988763 2222221111 1133 46788888864
No 139
>PRK13997 potassium-transporting ATPase subunit C; Provisional
Probab=29.15 E-value=40 Score=30.87 Aligned_cols=26 Identities=12% Similarity=0.218 Sum_probs=23.7
Q ss_pred hhHHhhccCCCCHHHHHHHHHHHHHH
Q 022952 198 RRKRVAQDSGKTEQQVSQLVAQLFQM 223 (289)
Q Consensus 198 R~~RIA~GSG~~~~eVn~Llk~f~~m 223 (289)
-..|||+-.|.++++|++|++++.+-
T Consensus 143 Qv~RVA~argls~~~v~~LV~~~t~~ 168 (193)
T PRK13997 143 QVERISKLTNIPKETLDQLIKDQTEG 168 (193)
T ss_pred HHHHHHHHhCcCHHHHHHHHHHHccC
Confidence 58999999999999999999999653
No 140
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=28.97 E-value=1.5e+02 Score=23.68 Aligned_cols=41 Identities=29% Similarity=0.220 Sum_probs=23.7
Q ss_pred CCCeEEEEEeCcCcH--HHHHHHHHhhh-hcCCCeEEEecccCC
Q 022952 13 NPTEVLLVVDAMTGQ--EAAALVTTFNI-EIGITGAILTKLDGD 53 (289)
Q Consensus 13 ~P~ev~LVldAttgq--da~~~a~~F~~-~v~i~gvIlTKlDet 53 (289)
..+-++||+|++.+. +..+....... ....--+++||+|..
T Consensus 74 ~ad~ii~V~d~~~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~ 117 (164)
T cd04171 74 GIDLVLLVVAADEGIMPQTREHLEILELLGIKRGLVVLTKADLV 117 (164)
T ss_pred cCCEEEEEEECCCCccHhHHHHHHHHHHhCCCcEEEEEECcccc
Confidence 567899999998742 22222222211 122345788999974
No 141
>PRK00741 prfC peptide chain release factor 3; Provisional
Probab=28.90 E-value=2.3e+02 Score=29.34 Aligned_cols=38 Identities=26% Similarity=0.336 Sum_probs=24.8
Q ss_pred CCCeEEEEEeCcCcHHH-----HHHHHHhhhhcCCCeEEEecccCC
Q 022952 13 NPTEVLLVVDAMTGQEA-----AALVTTFNIEIGITGAILTKLDGD 53 (289)
Q Consensus 13 ~P~ev~LVldAttgqda-----~~~a~~F~~~v~i~gvIlTKlDet 53 (289)
..+-+++|+|++.|-.. .+++..++ +| -=++++|+|..
T Consensus 102 ~aD~aIlVvDa~~gv~~~t~~l~~~~~~~~--iP-iiv~iNK~D~~ 144 (526)
T PRK00741 102 AVDSALMVIDAAKGVEPQTRKLMEVCRLRD--TP-IFTFINKLDRD 144 (526)
T ss_pred HCCEEEEEEecCCCCCHHHHHHHHHHHhcC--CC-EEEEEECCccc
Confidence 45789999999987422 22333332 34 45789999974
No 142
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=28.81 E-value=1e+02 Score=24.27 Aligned_cols=42 Identities=17% Similarity=0.201 Sum_probs=24.3
Q ss_pred CCCeEEEEEeCcCcH--HHHHHHHHhhhhcCCCeEEEecccCCC
Q 022952 13 NPTEVLLVVDAMTGQ--EAAALVTTFNIEIGITGAILTKLDGDS 54 (289)
Q Consensus 13 ~P~ev~LVldAttgq--da~~~a~~F~~~v~i~gvIlTKlDeta 54 (289)
..+-+++|+|+..+. ......+..+..--+--+|+||+|...
T Consensus 76 ~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~ 119 (157)
T cd01894 76 EADVILFVVDGREGLTPADEEIAKYLRKSKKPVILVVNKVDNIK 119 (157)
T ss_pred hCCEEEEEEeccccCCccHHHHHHHHHhcCCCEEEEEECcccCC
Confidence 467899999987653 111222222221134478889999754
No 143
>cd06278 PBP1_LacI_like_2 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=28.79 E-value=1.1e+02 Score=26.55 Aligned_cols=55 Identities=18% Similarity=0.207 Sum_probs=37.0
Q ss_pred EEEEeCcCcHHHHHHHHHhhhhcCCCeEEEecccCCCCCCccccceeccCCCeEEEecC
Q 022952 18 LLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRG 76 (289)
Q Consensus 18 ~LVldAttgqda~~~a~~F~~~v~i~gvIlTKlDetargG~aLS~~~~t~~PI~FIgtG 76 (289)
++++.+....+..++++.+.. -+++|+|++=.|.+. .++......+.|+.++...
T Consensus 32 ~~~~~~~~~~~~~~~i~~~~~-~~vdgiii~~~~~~~---~~~~~~~~~~ipvV~~~~~ 86 (266)
T cd06278 32 PLLINTDDDEDLDAALRQLLQ-YRVDGVIVTSGTLSS---ELAEECRRNGIPVVLINRY 86 (266)
T ss_pred EEEEcCCCCHHHHHHHHHHHH-cCCCEEEEecCCCCH---HHHHHHhhcCCCEEEECCc
Confidence 344455444455566677665 689999998666443 3466667789999999754
No 144
>TIGR00484 EF-G translation elongation factor EF-G. After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.
Probab=28.75 E-value=2.8e+02 Score=29.40 Aligned_cols=37 Identities=19% Similarity=0.252 Sum_probs=24.5
Q ss_pred CCeEEEEEeCcCcH--H---HHHHHHHhhhhcCCCeEEEecccCC
Q 022952 14 PTEVLLVVDAMTGQ--E---AAALVTTFNIEIGITGAILTKLDGD 53 (289)
Q Consensus 14 P~ev~LVldAttgq--d---a~~~a~~F~~~v~i~gvIlTKlDet 53 (289)
-|-++||+||+.|. . ....+..+. +++ -++++|+|..
T Consensus 99 ~D~~ilVvda~~g~~~~~~~~~~~~~~~~--~p~-ivviNK~D~~ 140 (689)
T TIGR00484 99 LDGAVAVLDAVGGVQPQSETVWRQANRYE--VPR-IAFVNKMDKT 140 (689)
T ss_pred hCEEEEEEeCCCCCChhHHHHHHHHHHcC--CCE-EEEEECCCCC
Confidence 37899999999874 2 223333332 344 5789999975
No 145
>PRK14003 potassium-transporting ATPase subunit C; Provisional
Probab=28.56 E-value=46 Score=30.48 Aligned_cols=26 Identities=23% Similarity=0.271 Sum_probs=23.8
Q ss_pred hhHHhhccCCCCHHHHHHHHHHHHHH
Q 022952 198 RRKRVAQDSGKTEQQVSQLVAQLFQM 223 (289)
Q Consensus 198 R~~RIA~GSG~~~~eVn~Llk~f~~m 223 (289)
-..|||+-.|.++++|++|++++.+-
T Consensus 144 Qv~RVA~argl~~~~v~~LI~~~t~~ 169 (194)
T PRK14003 144 QIERVAKARGLPPDQLEILITKNTDG 169 (194)
T ss_pred HHHHHHHHhCcCHHHHHHHHHHHhhC
Confidence 58999999999999999999999653
No 146
>TIGR01007 eps_fam capsular exopolysaccharide family. This model describes the capsular exopolysaccharide proteins in bacteria. The exopolysaccharide gene cluster consists of several genes which encode a number of proteins which regulate the exoploysaccharide biosynthesis(EPS). Atleast 13 genes espA to espM in streptococcus species seem to direct the EPS proteins and all of which share high homology. Functional roles were characterized by gene disruption experiments which resulted in exopolysaccharide-deficient phenotypes.
Probab=28.55 E-value=1e+02 Score=26.73 Aligned_cols=40 Identities=20% Similarity=0.204 Sum_probs=27.4
Q ss_pred CCeEEEEEeCcCcH--HHHHHHHHhhh-hcCCCeEEEecccCC
Q 022952 14 PTEVLLVVDAMTGQ--EAAALVTTFNI-EIGITGAILTKLDGD 53 (289)
Q Consensus 14 P~ev~LVldAttgq--da~~~a~~F~~-~v~i~gvIlTKlDet 53 (289)
.|.+++|+++.... ++...++.+.. .+++-|+|+||.|..
T Consensus 151 ~D~vilV~~~~~~~~~~~~~~~~~l~~~~~~~~gvVlN~~~~~ 193 (204)
T TIGR01007 151 CDASILVTDAGEIKKRDVQKAKEQLEQTGSNFLGVVLNKVDIS 193 (204)
T ss_pred CCeEEEEEECCCCCHHHHHHHHHHHHhCCCCEEEEEEeCcccc
Confidence 58999999887443 44444444443 136789999999965
No 147
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=28.35 E-value=1.9e+02 Score=28.12 Aligned_cols=42 Identities=21% Similarity=0.265 Sum_probs=26.6
Q ss_pred CCCeEEEEEeCcCcH--HHHHHHHHhhhhcCCCeEEEecccCCC
Q 022952 13 NPTEVLLVVDAMTGQ--EAAALVTTFNIEIGITGAILTKLDGDS 54 (289)
Q Consensus 13 ~P~ev~LVldAttgq--da~~~a~~F~~~v~i~gvIlTKlDeta 54 (289)
..+-++||+|+..|. +..++++.....=-.-=+|+||+|...
T Consensus 78 ~ad~vl~vvD~~~~~~~~d~~i~~~l~~~~~piilVvNK~D~~~ 121 (429)
T TIGR03594 78 EADVILFVVDGREGLTPEDEEIAKWLRKSGKPVILVANKIDGKK 121 (429)
T ss_pred hCCEEEEEEeCCCCCCHHHHHHHHHHHHhCCCEEEEEECccCCc
Confidence 568899999999875 222344433331123457889999754
No 148
>PF13500 AAA_26: AAA domain; PDB: 3OF5_A 2IOJ_A 4A0G_B 4A0R_A 4A0H_B 4A0F_B 3FMI_C 3FPA_D 3FMF_C 3FGN_A ....
Probab=28.16 E-value=1.1e+02 Score=26.56 Aligned_cols=39 Identities=21% Similarity=0.358 Sum_probs=29.4
Q ss_pred CeEEEEEeCcCcH--HHHHHHHHhhh-hcCCCeEEEecccCC
Q 022952 15 TEVLLVVDAMTGQ--EAAALVTTFNI-EIGITGAILTKLDGD 53 (289)
Q Consensus 15 ~ev~LVldAttgq--da~~~a~~F~~-~v~i~gvIlTKlDet 53 (289)
..++||+++..|. ++...++.+.. .+++-|+|++++++.
T Consensus 130 a~vIlV~~~~~g~i~~~l~~~~~~~~~g~~v~GvI~N~~~~~ 171 (199)
T PF13500_consen 130 APVILVASGRLGTINHTLLTIEALKQRGIRVLGVILNRVPEP 171 (199)
T ss_dssp -EEEEEEESSTTHHHHHHHHHHHHHCTTS-EEEEEEEECTCC
T ss_pred CCEEEEeCCCCCCHHHHHHHHHHHHhcCCCEEEEEEECCCCH
Confidence 5799999999997 55556666643 478999999998776
No 149
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=28.14 E-value=88 Score=25.58 Aligned_cols=46 Identities=22% Similarity=0.117 Sum_probs=25.6
Q ss_pred HHHHh-CCCeEEEEEeCcCcHHHH-HHHHHhhhhc---CCCeEEEecccCC
Q 022952 8 VKRVL-NPTEVLLVVDAMTGQEAA-ALVTTFNIEI---GITGAILTKLDGD 53 (289)
Q Consensus 8 i~~~~-~P~ev~LVldAttgqda~-~~a~~F~~~v---~i~gvIlTKlDet 53 (289)
+.+++ .-|-+++|+|+....... .....|-... ..--+|+||+|-.
T Consensus 5 ~~~~i~~aD~vl~ViD~~~p~~~~~~~l~~~l~~~~~~k~~iivlNK~DL~ 55 (141)
T cd01857 5 LWRVVERSDIVVQIVDARNPLLFRPPDLERYVKEVDPRKKNILLLNKADLL 55 (141)
T ss_pred HHHHHhhCCEEEEEEEccCCcccCCHHHHHHHHhccCCCcEEEEEechhcC
Confidence 33444 356789999997654211 1222222111 2345788999963
No 150
>PRK13999 potassium-transporting ATPase subunit C; Provisional
Probab=27.99 E-value=46 Score=30.67 Aligned_cols=26 Identities=31% Similarity=0.383 Sum_probs=23.7
Q ss_pred hhHHhhccCCCCHHHHHHHHHHHHHH
Q 022952 198 RRKRVAQDSGKTEQQVSQLVAQLFQM 223 (289)
Q Consensus 198 R~~RIA~GSG~~~~eVn~Llk~f~~m 223 (289)
-..|||+-.|.++++|++|++++.+=
T Consensus 150 Qv~RVA~argls~~~v~~LV~~~t~~ 175 (201)
T PRK13999 150 QVPRVAKARGLPEDRLRDLVAAQVEG 175 (201)
T ss_pred HHHHHHHHhCcCHHHHHHHHHHHhcC
Confidence 58999999999999999999999653
No 151
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=27.84 E-value=1.3e+02 Score=24.14 Aligned_cols=41 Identities=15% Similarity=0.050 Sum_probs=22.8
Q ss_pred CCCeEEEEEeCcCcHHHHHHHHHhhhhc-------CCCeEEEecccCC
Q 022952 13 NPTEVLLVVDAMTGQEAAALVTTFNIEI-------GITGAILTKLDGD 53 (289)
Q Consensus 13 ~P~ev~LVldAttgqda~~~a~~F~~~v-------~i~gvIlTKlDet 53 (289)
..+-++||+|++......+....+...+ -+--+|+||.|..
T Consensus 67 ~~~~iv~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 114 (160)
T cd04156 67 NTDGLVYVVDSSDEARLDESQKELKHILKNEHIKGVPVVLLANKQDLP 114 (160)
T ss_pred cCCEEEEEEECCcHHHHHHHHHHHHHHHhchhhcCCCEEEEEECcccc
Confidence 4577899999987752222211111110 2346788888863
No 152
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=27.82 E-value=98 Score=26.10 Aligned_cols=39 Identities=21% Similarity=0.141 Sum_probs=20.4
Q ss_pred CCeEEEEEeCcCcHH--HHHHHHHhhhhcC-CCeEEEecccCC
Q 022952 14 PTEVLLVVDAMTGQE--AAALVTTFNIEIG-ITGAILTKLDGD 53 (289)
Q Consensus 14 P~ev~LVldAttgqd--a~~~a~~F~~~v~-i~gvIlTKlDet 53 (289)
.+-+++|+|++.+.. .......+.. .+ +--+++||+|.-
T Consensus 101 ~~~ii~vvd~~~~~~~~~~~~~~~~~~-~~~pviiv~nK~D~~ 142 (179)
T TIGR03598 101 LKGVVLLMDIRHPLKELDLEMLEWLRE-RGIPVLIVLTKADKL 142 (179)
T ss_pred hcEEEEEecCCCCCCHHHHHHHHHHHH-cCCCEEEEEECcccC
Confidence 356888888877541 1122233322 11 234666777763
No 153
>cd01885 EF2 EF2 (for archaea and eukarya). Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco
Probab=27.74 E-value=98 Score=28.15 Aligned_cols=40 Identities=20% Similarity=0.234 Sum_probs=22.4
Q ss_pred CCCeEEEEEeCcCcH--HHHHHHHHhh-hhcCCCeEEEecccCC
Q 022952 13 NPTEVLLVVDAMTGQ--EAAALVTTFN-IEIGITGAILTKLDGD 53 (289)
Q Consensus 13 ~P~ev~LVldAttgq--da~~~a~~F~-~~v~i~gvIlTKlDet 53 (289)
..+-++||+|++.|. ....+++... ..++ --++++|+|..
T Consensus 96 ~aD~~ilVvD~~~g~~~~t~~~l~~~~~~~~p-~ilviNKiD~~ 138 (222)
T cd01885 96 LCDGALVVVDAVEGVCVQTETVLRQALKERVK-PVLVINKIDRL 138 (222)
T ss_pred hcCeeEEEEECCCCCCHHHHHHHHHHHHcCCC-EEEEEECCCcc
Confidence 356788888888874 2222332222 2233 34667888863
No 154
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=27.69 E-value=61 Score=27.39 Aligned_cols=41 Identities=15% Similarity=-0.082 Sum_probs=24.1
Q ss_pred CCCeEEEEEeCcCcHH---HHHHHHHhhhhc--CCCeEEEecccCC
Q 022952 13 NPTEVLLVVDAMTGQE---AAALVTTFNIEI--GITGAILTKLDGD 53 (289)
Q Consensus 13 ~P~ev~LVldAttgqd---a~~~a~~F~~~v--~i~gvIlTKlDet 53 (289)
..+-++||+|++.... +....+.+...- -+--+|.||.|..
T Consensus 73 ~~d~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~piilv~nK~Dl~ 118 (193)
T cd04118 73 GAKAAIVCYDLTDSSSFERAKFWVKELQNLEEHCKIYLCGTKSDLI 118 (193)
T ss_pred CCCEEEEEEECCCHHHHHHHHHHHHHHHhcCCCCCEEEEEEccccc
Confidence 4678899999876642 222333333210 1235889999963
No 155
>PRK01117 adenylosuccinate synthetase; Provisional
Probab=27.43 E-value=43 Score=34.09 Aligned_cols=21 Identities=24% Similarity=0.640 Sum_probs=15.1
Q ss_pred ceeccCCCeEEEecCCCCCCC
Q 022952 62 VKEVSGKPIKLVGRGERMEDL 82 (289)
Q Consensus 62 ~~~~t~~PI~FIgtGQkVdDL 82 (289)
+-...++||.||++|..-+|.
T Consensus 401 iE~~~g~pv~~is~Gp~r~~~ 421 (430)
T PRK01117 401 IEELTGVPISIISTGPDRDQT 421 (430)
T ss_pred HHHHHCCCEEEEEcCCChHHE
Confidence 344567888888888877654
No 156
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=27.34 E-value=1.1e+02 Score=25.20 Aligned_cols=67 Identities=18% Similarity=0.123 Sum_probs=33.9
Q ss_pred CCCeEEEEEeCcCcHHHHHHHHHh---hh----hcCCCeEEEecccCCCCCC-c---cccceeccCCCeEEEe--cCCCC
Q 022952 13 NPTEVLLVVDAMTGQEAAALVTTF---NI----EIGITGAILTKLDGDSRGG-A---ALSVKEVSGKPIKLVG--RGERM 79 (289)
Q Consensus 13 ~P~ev~LVldAttgqda~~~a~~F---~~----~v~i~gvIlTKlDetargG-~---aLS~~~~t~~PI~FIg--tGQkV 79 (289)
..+-++||+|++......++..-+ .. .++ =-+|.||+|....-. . +-......+.|+..++ +|++|
T Consensus 76 ~~d~il~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-vivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i 154 (168)
T cd01866 76 GAAGALLVYDITRRETFNHLTSWLEDARQHSNSNMT-IMLIGNKCDLESRREVSYEEGEAFAKEHGLIFMETSAKTASNV 154 (168)
T ss_pred cCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCc-EEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCH
Confidence 457899999998654222222211 11 122 267889999742211 1 1223334555655554 45545
Q ss_pred C
Q 022952 80 E 80 (289)
Q Consensus 80 d 80 (289)
+
T Consensus 155 ~ 155 (168)
T cd01866 155 E 155 (168)
T ss_pred H
Confidence 4
No 157
>PRK13995 potassium-transporting ATPase subunit C; Provisional
Probab=27.23 E-value=48 Score=30.55 Aligned_cols=26 Identities=15% Similarity=0.252 Sum_probs=23.7
Q ss_pred hhHHhhccCCCCHHHHHHHHHHHHHH
Q 022952 198 RRKRVAQDSGKTEQQVSQLVAQLFQM 223 (289)
Q Consensus 198 R~~RIA~GSG~~~~eVn~Llk~f~~m 223 (289)
-..|||+-.|.++++|++|++++.+-
T Consensus 151 Qv~RVA~argl~~~~v~~LV~~~t~~ 176 (203)
T PRK13995 151 QIPAVSKATGISESKLKKIVKDNTEG 176 (203)
T ss_pred HHHHHHHHhCcCHHHHHHHHHHHhcC
Confidence 58999999999999999999998653
No 158
>PRK14002 potassium-transporting ATPase subunit C; Provisional
Probab=27.12 E-value=48 Score=30.18 Aligned_cols=26 Identities=42% Similarity=0.542 Sum_probs=23.7
Q ss_pred hhHHhhccCCCCHHHHHHHHHHHHHH
Q 022952 198 RRKRVAQDSGKTEQQVSQLVAQLFQM 223 (289)
Q Consensus 198 R~~RIA~GSG~~~~eVn~Llk~f~~m 223 (289)
-..|||+-.|.++++|.+|++++.+-
T Consensus 137 Qv~RVA~argl~~~~v~~LV~~~t~~ 162 (186)
T PRK14002 137 QVKRVAKARGMSEEKVKQLVDQHVEK 162 (186)
T ss_pred HHHHHHHHhCcCHHHHHHHHHHHhcC
Confidence 58999999999999999999999654
No 159
>COG0218 Predicted GTPase [General function prediction only]
Probab=27.03 E-value=95 Score=28.54 Aligned_cols=44 Identities=23% Similarity=0.280 Sum_probs=29.5
Q ss_pred CCeEEEEEeCcCcHHH--HHHHHHhhhhcCCC-eEEEecccCCCCCCc
Q 022952 14 PTEVLLVVDAMTGQEA--AALVTTFNIEIGIT-GAILTKLDGDSRGGA 58 (289)
Q Consensus 14 P~ev~LVldAttgqda--~~~a~~F~~~v~i~-gvIlTKlDetargG~ 58 (289)
=.-+++++|+-.+..- .+.++-+.. .++. -+|+||+|--.++.-
T Consensus 107 L~~vvlliD~r~~~~~~D~em~~~l~~-~~i~~~vv~tK~DKi~~~~~ 153 (200)
T COG0218 107 LKGVVLLIDARHPPKDLDREMIEFLLE-LGIPVIVVLTKADKLKKSER 153 (200)
T ss_pred heEEEEEEECCCCCcHHHHHHHHHHHH-cCCCeEEEEEccccCChhHH
Confidence 3568999999999722 233444443 4444 578999998776655
No 160
>PRK14000 potassium-transporting ATPase subunit C; Provisional
Probab=27.01 E-value=42 Score=30.50 Aligned_cols=26 Identities=19% Similarity=0.339 Sum_probs=23.8
Q ss_pred hhHHhhccCCCCHHHHHHHHHHHHHH
Q 022952 198 RRKRVAQDSGKTEQQVSQLVAQLFQM 223 (289)
Q Consensus 198 R~~RIA~GSG~~~~eVn~Llk~f~~m 223 (289)
-..|||+-.|.++++|.+|++++.+-
T Consensus 140 Qv~RVA~argls~~~v~~LV~~~t~~ 165 (185)
T PRK14000 140 QVKRIAKERNIDASKINHLIDENKQA 165 (185)
T ss_pred HHHHHHHHhCcCHHHHHHHHHHhccC
Confidence 58999999999999999999998664
No 161
>PRK13996 potassium-transporting ATPase subunit C; Provisional
Probab=26.95 E-value=49 Score=30.38 Aligned_cols=26 Identities=12% Similarity=0.282 Sum_probs=23.8
Q ss_pred hhHHhhccCCCCHHHHHHHHHHHHHH
Q 022952 198 RRKRVAQDSGKTEQQVSQLVAQLFQM 223 (289)
Q Consensus 198 R~~RIA~GSG~~~~eVn~Llk~f~~m 223 (289)
-..|||+-.|.++++|++|++++.+-
T Consensus 147 Qv~RVA~argls~~~v~~LV~~~t~~ 172 (197)
T PRK13996 147 QVDRIAKNNNMSVKDVEDIIDKYTSG 172 (197)
T ss_pred HHHHHHHHhCcCHHHHHHHHHHHhcC
Confidence 58999999999999999999999664
No 162
>cd05027 S-100B S-100B: S-100B domain found in proteins similar to S100B. S100B is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100B group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100B is most abundant in glial cells of the central nervous system, predominately in astrocytes. S100B is involved in signal transduction via the inhibition of protein phoshorylation, regulation of enzyme activity and by affecting the calcium homeostasis. Upon calcium binding the S100B homodimer changes conformation to expose a hydrophobic cleft, which represents the interaction site of S100B with its more than 20 known target proteins. These target proteins include several cellular architecture proteins such as tubulin and GFAP; S100B can inhibit polymerization of these oligomeric molecules. Furthermore, S100B i
Probab=26.67 E-value=1.2e+02 Score=23.55 Aligned_cols=42 Identities=17% Similarity=0.408 Sum_probs=26.2
Q ss_pred chhHHHHH-----HHHhccHHHHHHHHHHHH---hCCcChHHHHHHHHHH
Q 022952 99 DVLSFVEK-----AQEVMQQEDAEEMQKKIM---SANFDFNDFLKQTRTV 140 (289)
Q Consensus 99 Di~sLvEk-----~~~~~~~~~~~~~~~k~~---~g~F~l~Df~~Q~~~i 140 (289)
++..++.. +....++++.+++.+.+- .|+++|++|+..+..+
T Consensus 31 eL~~ll~~~~~~~lg~~~~~~~v~~~i~~~D~n~dG~v~f~eF~~li~~~ 80 (88)
T cd05027 31 ELKELINNELSHFLEEIKEQEVVDKVMETLDSDGDGECDFQEFMAFVAMV 80 (88)
T ss_pred HHHHHHHHHhHHHhcCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHH
Confidence 34444444 344445555666666554 4789999998876654
No 163
>PRK12289 GTPase RsgA; Reviewed
Probab=26.27 E-value=43 Score=32.87 Aligned_cols=119 Identities=17% Similarity=0.136 Sum_probs=59.6
Q ss_pred HhCCCeEEEEEeCcCcH-H--HHH--HHHHhhhhcCCCeEEEecccCCCCC-Cc-cccceeccCCCeEEEe--cCCCCCC
Q 022952 11 VLNPTEVLLVVDAMTGQ-E--AAA--LVTTFNIEIGITGAILTKLDGDSRG-GA-ALSVKEVSGKPIKLVG--RGERMED 81 (289)
Q Consensus 11 ~~~P~ev~LVldAttgq-d--a~~--~a~~F~~~v~i~gvIlTKlDetarg-G~-aLS~~~~t~~PI~FIg--tGQkVdD 81 (289)
+.+-|.++||+|+.... + .++ .+.+....+++ -+|+||+|....- -. ........+.++.|++ +|+.+++
T Consensus 87 ~aNvD~vLlV~d~~~p~~~~~~LdR~L~~a~~~~ip~-ILVlNK~DLv~~~~~~~~~~~~~~~g~~v~~iSA~tg~GI~e 165 (352)
T PRK12289 87 VANADQILLVFALAEPPLDPWQLSRFLVKAESTGLEI-VLCLNKADLVSPTEQQQWQDRLQQWGYQPLFISVETGIGLEA 165 (352)
T ss_pred hhcCCEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCE-EEEEEchhcCChHHHHHHHHHHHhcCCeEEEEEcCCCCCHHH
Confidence 34668899999997432 1 111 11222222332 5788999974221 00 1122234577887766 6777766
Q ss_pred CCCCChhHHHHHhhCCCch--hHHHHHHHHhccHHHHHHHHHHHHhCCcChHH
Q 022952 82 LEPFYPDRMAGRILGMGDV--LSFVEKAQEVMQQEDAEEMQKKIMSANFDFND 132 (289)
Q Consensus 82 Le~f~p~~la~rlLG~gDi--~sLvEk~~~~~~~~~~~~~~~k~~~g~F~l~D 132 (289)
|...=...+ .-++|...+ .||+...-..... ...+...+..+|+=|=.+
T Consensus 166 L~~~L~~ki-~v~iG~SgVGKSSLIN~L~~~~~~-~t~~vs~~~~rGrHTT~~ 216 (352)
T PRK12289 166 LLEQLRNKI-TVVAGPSGVGKSSLINRLIPDVEL-RVGKVSGKLGRGRHTTRH 216 (352)
T ss_pred Hhhhhccce-EEEEeCCCCCHHHHHHHHcCcccc-ccccccCCCCCCCCcCce
Confidence 554433332 456665332 5666665321111 012344455566544433
No 164
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=26.25 E-value=57 Score=27.35 Aligned_cols=40 Identities=13% Similarity=-0.011 Sum_probs=22.4
Q ss_pred CCCeEEEEEeCcCcHHHHHHH-------HHhhhhcCCCeEEEecccCC
Q 022952 13 NPTEVLLVVDAMTGQEAAALV-------TTFNIEIGITGAILTKLDGD 53 (289)
Q Consensus 13 ~P~ev~LVldAttgqda~~~a-------~~F~~~v~i~gvIlTKlDet 53 (289)
.-+-++||.|++....-.+.. ..+...+|+ =+|.||.|..
T Consensus 72 ~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pi-ilv~nK~Dl~ 118 (187)
T cd04132 72 DVDVLLICYAVDNPTSLDNVEDKWFPEVNHFCPGTPI-MLVGLKTDLR 118 (187)
T ss_pred CCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCE-EEEEeChhhh
Confidence 457788899988765222222 222222333 5667888863
No 165
>cd01537 PBP1_Repressors_Sugar_Binding_like Ligand-binding domain of the LacI-GalR family of transcription regulators and the sugar-binding domain of ABC-type transport systems. Ligand-binding domain of the LacI-GalR family of transcription regulators and the sugar-binding domain of ABC-type transport systems, all of which contain the type I periplasmic binding protein-like fold. Their specific ligands include lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. The LacI family of proteins consists of transcriptional regulators related to the lac repressor; in general the sugar binding domain in this family binds a sugar, which in turn changes the DNA binding activity of the repressor domain. The core structure of the periplasmic binding proteins is classified into two types and they differ in number and order of beta strands in each domain: type I, which has six beta strands, and type II, which has five beta strands. These two distinct structural arrangem
Probab=26.24 E-value=2.9e+02 Score=23.33 Aligned_cols=58 Identities=17% Similarity=0.303 Sum_probs=39.5
Q ss_pred EEEEeCcCcH-HHHHHHHHhhhhcCCCeEEEecccCCCCCCccccceeccCCCeEEEecCCC
Q 022952 18 LLVVDAMTGQ-EAAALVTTFNIEIGITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGER 78 (289)
Q Consensus 18 ~LVldAttgq-da~~~a~~F~~~v~i~gvIlTKlDetargG~aLS~~~~t~~PI~FIgtGQk 78 (289)
+.+.+....+ ...+.++..-. -+++++|++=.+.+... .+-.....++|+.++++...
T Consensus 32 l~~~~~~~~~~~~~~~~~~~~~-~~~d~ii~~~~~~~~~~--~~~~l~~~~ip~v~~~~~~~ 90 (264)
T cd01537 32 VLLANSQNDAEKQLSALENLIA-RGVDGIIIAPSDLTAPT--IVKLARKAGIPVVLVDRDIP 90 (264)
T ss_pred EEEEeCCCCHHHHHHHHHHHHH-cCCCEEEEecCCCcchh--HHHHhhhcCCCEEEeccCCC
Confidence 4455555444 44556666554 48999999877765543 46666788999999987744
No 166
>TIGR01209 RNA ligase, Pab1020 family. Members of this family are found, so far, in a single copy per genome and largely in thermophiles, of which only Aquifex aeolicus is bacterial rather than archaeal. PSI-BLAST converges after a single iteration to the whole of this family and reveals no convincing similarity to any other protein. The member protein Pab1020 has been characterized as an RNA ligase with circularization activity.
Probab=26.02 E-value=79 Score=31.71 Aligned_cols=50 Identities=24% Similarity=0.365 Sum_probs=37.2
Q ss_pred cccCCCCCCccccceeccCCCeEEEecCCCCCCCC-------CCChhHHHHHhhCCC
Q 022952 49 KLDGDSRGGAALSVKEVSGKPIKLVGRGERMEDLE-------PFYPDRMAGRILGMG 98 (289)
Q Consensus 49 KlDetargG~aLS~~~~t~~PI~FIgtGQkVdDLe-------~f~p~~la~rlLG~g 98 (289)
++|...+=|-++--......|++|+|.--+++||. .+-++.|.+||+.+|
T Consensus 212 ~L~~~gREGVVlK~~~~~~~~~KYtT~~~n~~Di~~~~~~~~d~g~df~~sRi~Re~ 268 (374)
T TIGR01209 212 RLNKEGREGVVMKDPEMRVKPLKYTTSYANINDIKYAARYFFELGRDFFFSRILREA 268 (374)
T ss_pred HhhhcCcceEEEcCccccCCcceeecCccChHHHHHHHhhccccCchHHHHHHHHHH
Confidence 44455566666644434479999999999999984 456889999999864
No 167
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=25.93 E-value=1.3e+02 Score=25.94 Aligned_cols=40 Identities=28% Similarity=0.253 Sum_probs=27.2
Q ss_pred CCCeEEEEEeCcC-cHHHHHHHHHhhhhc-----CCCeEEEecccC
Q 022952 13 NPTEVLLVVDAMT-GQEAAALVTTFNIEI-----GITGAILTKLDG 52 (289)
Q Consensus 13 ~P~ev~LVldAtt-gqda~~~a~~F~~~v-----~i~gvIlTKlDe 52 (289)
.++-++||+|+.. .++-..+++.+.+.+ ...-+|+|+.|.
T Consensus 83 g~~~illVi~~~~~t~~d~~~l~~l~~~fg~~~~~~~ivv~T~~d~ 128 (196)
T cd01852 83 GPHAFLLVVPLGRFTEEEEQAVETLQELFGEKVLDHTIVLFTRGDD 128 (196)
T ss_pred CCEEEEEEEECCCcCHHHHHHHHHHHHHhChHhHhcEEEEEECccc
Confidence 4788999999875 334444555555433 456688999997
No 168
>PRK10991 fucI L-fucose isomerase; Provisional
Probab=25.73 E-value=3.7e+02 Score=28.68 Aligned_cols=74 Identities=30% Similarity=0.428 Sum_probs=44.9
Q ss_pred EEeCcCcH--HHHHHHHHhhhhcCCCeEE-Eecc----------c-----------CCCCCC-----ccccceeccCCCe
Q 022952 20 VVDAMTGQ--EAAALVTTFNIEIGITGAI-LTKL----------D-----------GDSRGG-----AALSVKEVSGKPI 70 (289)
Q Consensus 20 VldAttgq--da~~~a~~F~~~v~i~gvI-lTKl----------D-----------etargG-----~aLS~~~~t~~PI 70 (289)
+-|.+++. +|...++.|+. -+++++| +|=+ | ++.+.| +++++..+.|+|-
T Consensus 55 iad~~I~~~~eA~~~aekFk~-e~Vd~~I~vt~cw~fG~Et~d~~~~~PvllWg~~dperPGav~L~A~laa~~Q~Gip~ 133 (588)
T PRK10991 55 IADTCIGGVAEAAACEEKFSS-ENVGLTITVTPCWCYGSETIDMDPTRPKAIWGFNGTERPGAVYLAAALAAHSQKGIPA 133 (588)
T ss_pred eCccccCCHHHHHHHHHHHhh-cCCCEEEEecCcccchhHHHhcCCCCCEEEeCCCCCCCCcHHHHHHHHHHHHhcCCCe
Confidence 34555554 78889999997 8999999 5543 1 223444 3455567889995
Q ss_pred EEEecCCCCCCCCCCC-hhHHHHHhh
Q 022952 71 KLVGRGERMEDLEPFY-PDRMAGRIL 95 (289)
Q Consensus 71 ~FIgtGQkVdDLe~f~-p~~la~rlL 95 (289)
.|| .|-.|+|++.-+ |+.+...|+
T Consensus 134 ~~I-yGh~vqd~dd~~i~~dv~ekLl 158 (588)
T PRK10991 134 FSI-YGHDVQDADDTSIPADVEEKLL 158 (588)
T ss_pred EEE-eCCCccccccccchHHHHHHHH
Confidence 555 576665554432 344444433
No 169
>cd01917 ACS_2 Acetyl-CoA synthase (ACS), also known as acetyl-CoA decarbonylase, is found in acetogenic and methanogenic organisms and is responsible for the synthesis and breakdown of acetyl-CoA. ACS forms a heterotetramer with carbon monoxide dehydrogenase (CODH) consisting of two ACS and two CODH subunits. CODH reduces carbon dioxide to carbon monoxide and ACS then synthesizes acetyl-CoA from carbon monoxide, CoA, and a methyl group donated by another protein (CoFeSP). ACS has three structural domains, an N-terminal rossman fold domain with a helical region at its N-terminus which interacts with CODH, and two alpha + beta fold domains. A Ni-Fe-S center referred to as the A-cluster is located in the C-terminal domain. A large cavity exists between the three domains which may bind CoA.
Probab=25.63 E-value=94 Score=30.16 Aligned_cols=61 Identities=13% Similarity=0.281 Sum_probs=43.1
Q ss_pred cCCCeEEEecCCCCCCCCCCChhHHHHHhhCCCchhHHHHHHHHhccHHHHHHHHHHHHhCCcCh--HHHHHHHHHHHhc
Q 022952 66 SGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQKKIMSANFDF--NDFLKQTRTVARM 143 (289)
Q Consensus 66 t~~PI~FIgtGQkVdDLe~f~p~~la~rlLG~gDi~sLvEk~~~~~~~~~~~~~~~k~~~g~F~l--~Df~~Q~~~i~km 143 (289)
+.+||.|--||.+|++| +|++.++++++..+.++. .+-..+..|.=|+ -++++-++.+..-
T Consensus 37 Y~LPviy~~tG~kv~~l---------------~dl~~~l~~~r~~~~~~~--~l~~al~aG~at~~aaE~iEAl~y~~~~ 99 (287)
T cd01917 37 YNLPVIRCLSGEKVETL---------------GDLKPLLNRLRAQVEEVL--TFENARLAGEATLYAAEIIEALRYLKSE 99 (287)
T ss_pred cccceeeeecCceeeeH---------------HHHHHHHHHHHHhcCccc--chhHHHHhhHHHHHHHHHHHHHHHhcCC
Confidence 67999999999999876 677788888887776542 3555566664333 4566666666554
No 170
>cd01225 PH_Cool_Pix Cool (cloned out of library)/Pix (PAK-interactive exchange factor) pleckstrin homology (PH) domain. Cool (cloned out of library)/Pix (PAK-interactive exchange factor) pleckstrin homology (PH) domain. Cool/Pix contains an N-terminal SH3 domain followed by a RhoGEF (DH) and PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=25.49 E-value=51 Score=27.72 Aligned_cols=57 Identities=21% Similarity=0.255 Sum_probs=40.7
Q ss_pred EEEEEeCcCcHHHHHHHHHhhhhcCCCeEEEecccCCCCCCccccceeccCCCeEEEecCC
Q 022952 17 VLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGE 77 (289)
Q Consensus 17 v~LVldAttgqda~~~a~~F~~~v~i~gvIlTKlDetargG~aLS~~~~t~~PI~FIgtGQ 77 (289)
+++.++++.+.+. =.|...+|++++.+|+++.+...=.|+-+.-..==||.+++..+
T Consensus 39 ~LlilS~s~r~sG----f~yqGkLPL~~i~v~~lEd~e~~~~aFeI~G~li~~i~v~C~~~ 95 (111)
T cd01225 39 VLLMLSASPRMSG----FIYQGKLPLTGIIVTRLEDTEALKNAFEISGPLIERIVVVCNNP 95 (111)
T ss_pred eEEEEEcCCCccc----eEEeeeecccccEEechHhccCccceEEEeccCcCcEEEEeCCH
Confidence 4555666655542 45777799999999999999866666666666666777777543
No 171
>PRK04000 translation initiation factor IF-2 subunit gamma; Validated
Probab=25.21 E-value=1.3e+02 Score=29.82 Aligned_cols=41 Identities=22% Similarity=0.219 Sum_probs=24.8
Q ss_pred CCCeEEEEEeCcCc---HHHHHHHHHhhhhcCCC--eEEEecccCCC
Q 022952 13 NPTEVLLVVDAMTG---QEAAALVTTFNIEIGIT--GAILTKLDGDS 54 (289)
Q Consensus 13 ~P~ev~LVldAttg---qda~~~a~~F~~~v~i~--gvIlTKlDeta 54 (289)
..+-++||+||+.+ ....+.+.... ..++. -+|+||+|...
T Consensus 108 ~~D~~llVVDa~~~~~~~~t~~~l~~l~-~~~i~~iiVVlNK~Dl~~ 153 (411)
T PRK04000 108 LMDGAILVIAANEPCPQPQTKEHLMALD-IIGIKNIVIVQNKIDLVS 153 (411)
T ss_pred hCCEEEEEEECCCCCCChhHHHHHHHHH-HcCCCcEEEEEEeecccc
Confidence 45789999999964 22233333222 24443 46679999743
No 172
>TIGR02034 CysN sulfate adenylyltransferase, large subunit. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).
Probab=25.17 E-value=1e+02 Score=30.42 Aligned_cols=67 Identities=18% Similarity=0.253 Sum_probs=37.6
Q ss_pred hCCCeEEEEEeCcCcH-----HHHHHHHHhhhhcCCC--eEEEecccCCCCCCcccc-ce-------e---ccCCCeEEE
Q 022952 12 LNPTEVLLVVDAMTGQ-----EAAALVTTFNIEIGIT--GAILTKLDGDSRGGAALS-VK-------E---VSGKPIKLV 73 (289)
Q Consensus 12 ~~P~ev~LVldAttgq-----da~~~a~~F~~~v~i~--gvIlTKlDetargG~aLS-~~-------~---~t~~PI~FI 73 (289)
...|-++||+||..|. +...++.. +++. -+++||+|-...--..+. +. . ..+.|+..|
T Consensus 102 ~~aD~allVVda~~G~~~qt~~~~~~~~~----~~~~~iivviNK~D~~~~~~~~~~~i~~~~~~~~~~~~~~~~~iipi 177 (406)
T TIGR02034 102 STADLAVLLVDARKGVLEQTRRHSYIASL----LGIRHVVLAVNKMDLVDYDEEVFENIKKDYLAFAEQLGFRDVTFIPL 177 (406)
T ss_pred hhCCEEEEEEECCCCCccccHHHHHHHHH----cCCCcEEEEEEecccccchHHHHHHHHHHHHHHHHHcCCCCccEEEe
Confidence 3568899999999884 12223333 3443 247999997532111110 00 1 123567777
Q ss_pred e--cCCCCCCC
Q 022952 74 G--RGERMEDL 82 (289)
Q Consensus 74 g--tGQkVdDL 82 (289)
+ +|++++++
T Consensus 178 SA~~g~ni~~~ 188 (406)
T TIGR02034 178 SALKGDNVVSR 188 (406)
T ss_pred ecccCCCCccc
Confidence 6 68877654
No 173
>PF04122 CW_binding_2: Putative cell wall binding repeat 2; InterPro: IPR007253 This repeat is found in multiple tandem copies in proteins including amidase enhancers [] and adhesins [].
Probab=25.15 E-value=71 Score=24.51 Aligned_cols=47 Identities=17% Similarity=0.142 Sum_probs=33.3
Q ss_pred HHHHHHHHhhhhcCCCeEEEecccCCCCCCccccceeccCCCeEEEe
Q 022952 28 EAAALVTTFNIEIGITGAILTKLDGDSRGGAALSVKEVSGKPIKLVG 74 (289)
Q Consensus 28 da~~~a~~F~~~v~i~gvIlTKlDetargG~aLS~~~~t~~PI~FIg 74 (289)
.+..+++.|....+.+.+++..=+.-+..=++-++.+..+.||.|+.
T Consensus 11 Ts~~va~~~~~~~~~~~v~ia~g~~~~Dalsa~~~a~~~~~PIll~~ 57 (92)
T PF04122_consen 11 TSAKVAKKFYPDNKSDKVYIASGDNFADALSASPLAAKNNAPILLVN 57 (92)
T ss_pred HHHHHHHHhcccCCCCEEEEEeCcchhhhhhhHHHHHhcCCeEEEEC
Confidence 46678888765568888888865554444445555666899999988
No 174
>cd05840 SPBC215_ISWI_like The PWWP domain is a component of the S. pombe hypothetical protein SPBC215, as well as ISWI complex protein 4. The ISWI (imitation switch) proteins are ATPases responsible for chromatin remodeling in eukaryotes, and SPBC215 is proposed to also bind chromatin. The PWWP domain, named for a conserved Pro-Trp-Trp-Pro motif, is a small domain consisting of 100-150 amino acids. The PWWP domain is found in numerous proteins that are involved in cell division, growth and differentiation. Most PWWP-domain proteins seem to be nuclear, often DNA-binding, proteins that function as transcription factors regulating a variety of developmental processes.
Probab=25.14 E-value=1.1e+02 Score=24.43 Aligned_cols=33 Identities=18% Similarity=0.359 Sum_probs=26.6
Q ss_pred eccCCCeEEEecCC----CCCCCCCCChhHHHHHhhC
Q 022952 64 EVSGKPIKLVGRGE----RMEDLEPFYPDRMAGRILG 96 (289)
Q Consensus 64 ~~t~~PI~FIgtGQ----kVdDLe~f~p~~la~rlLG 96 (289)
.....+|.|.++++ .-.+|.+|+.+.+.+.|-.
T Consensus 39 ~~~~~~V~FFg~~~~~Wv~~~~l~pl~~~~~~~~l~~ 75 (93)
T cd05840 39 NKRTYPVMFFPDGDYYWVPNKDLKPLTEEKIAKFLKK 75 (93)
T ss_pred CCCeEEEEEeCCCcEEEEChhhcccCCHHHHHHHhhc
Confidence 45668999999998 5589999998887776654
No 175
>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2. This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.
Probab=24.91 E-value=1.4e+02 Score=31.46 Aligned_cols=38 Identities=24% Similarity=0.267 Sum_probs=25.6
Q ss_pred CCCeEEEEEeCcCc---H--HHHHHHHHhhhhcCCCeEEEecccCC
Q 022952 13 NPTEVLLVVDAMTG---Q--EAAALVTTFNIEIGITGAILTKLDGD 53 (289)
Q Consensus 13 ~P~ev~LVldAttg---q--da~~~a~~F~~~v~i~gvIlTKlDet 53 (289)
..+-++||+|++.| | +..+.+... .++ --+++||+|..
T Consensus 92 ~aD~~IlVvD~~~g~~~qt~e~i~~l~~~--~vp-iIVv~NK~Dl~ 134 (590)
T TIGR00491 92 LADLAILIVDINEGFKPQTQEALNILRMY--KTP-FVVAANKIDRI 134 (590)
T ss_pred hCCEEEEEEECCcCCCHhHHHHHHHHHHc--CCC-EEEEEECCCcc
Confidence 56789999999975 3 233334333 244 36889999985
No 176
>PRK13998 potassium-transporting ATPase subunit C; Provisional
Probab=24.88 E-value=51 Score=30.00 Aligned_cols=25 Identities=20% Similarity=0.290 Sum_probs=23.2
Q ss_pred hhHHhhccCCCCHHHHHHHHHHHHH
Q 022952 198 RRKRVAQDSGKTEQQVSQLVAQLFQ 222 (289)
Q Consensus 198 R~~RIA~GSG~~~~eVn~Llk~f~~ 222 (289)
-..|||+-.|.++++|.+|++++.+
T Consensus 139 Qv~RVA~argl~~~~v~~LV~~~t~ 163 (186)
T PRK13998 139 QAPRIADARHVSTSRVADLIQHRKQ 163 (186)
T ss_pred HHHHHHHHhCcCHHHHHHHHHHhcc
Confidence 5899999999999999999999955
No 177
>PRK00093 GTP-binding protein Der; Reviewed
Probab=24.76 E-value=1.8e+02 Score=28.46 Aligned_cols=39 Identities=28% Similarity=0.243 Sum_probs=24.6
Q ss_pred hCCCeEEEEEeCcCcH---HH--HHHHHHhhhhcCCCeEEEecccCC
Q 022952 12 LNPTEVLLVVDAMTGQ---EA--AALVTTFNIEIGITGAILTKLDGD 53 (289)
Q Consensus 12 ~~P~ev~LVldAttgq---da--~~~a~~F~~~v~i~gvIlTKlDet 53 (289)
...|-++||+|++.|. +. ..++.... -.--+|+||+|..
T Consensus 254 ~~ad~~ilViD~~~~~~~~~~~i~~~~~~~~---~~~ivv~NK~Dl~ 297 (435)
T PRK00093 254 ERADVVLLVIDATEGITEQDLRIAGLALEAG---RALVIVVNKWDLV 297 (435)
T ss_pred HHCCEEEEEEeCCCCCCHHHHHHHHHHHHcC---CcEEEEEECccCC
Confidence 3568899999999764 21 12233222 2345889999975
No 178
>PRK13787 adenylosuccinate synthetase; Provisional
Probab=24.36 E-value=59 Score=33.10 Aligned_cols=14 Identities=57% Similarity=0.544 Sum_probs=11.7
Q ss_pred CCCeEEEecccCCC
Q 022952 41 GITGAILTKLDGDS 54 (289)
Q Consensus 41 ~i~gvIlTKlDeta 54 (289)
+++++.+||+|--+
T Consensus 323 g~t~lalTkLDvL~ 336 (423)
T PRK13787 323 GITSIALTKIDILS 336 (423)
T ss_pred CCceEEEecccccC
Confidence 78999999999543
No 179
>cd04723 HisA_HisF Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase (HisA) and the cyclase subunit of imidazoleglycerol phosphate synthase (HisF). The ProFAR isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene. The Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and pl
Probab=24.35 E-value=1.1e+02 Score=27.73 Aligned_cols=75 Identities=20% Similarity=0.236 Sum_probs=49.6
Q ss_pred HHHHHhCCCeEEEEEeCcCc--------HHHHHHHHHhhhhcCCCeEEEecccCCCCCCc-c----ccceeccCCCeEEE
Q 022952 7 DVKRVLNPTEVLLVVDAMTG--------QEAAALVTTFNIEIGITGAILTKLDGDSRGGA-A----LSVKEVSGKPIKLV 73 (289)
Q Consensus 7 ~i~~~~~P~ev~LVldAttg--------qda~~~a~~F~~~v~i~gvIlTKlDetargG~-a----LS~~~~t~~PI~FI 73 (289)
++.+......+++.+|+.-| .+..+.++.|.. . ++.+|+|=+|.+..+.+ - -.++..++.||.+-
T Consensus 118 ~~~~~~~~~~iivslD~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~li~~di~~~G~~~g~~~~~~~~i~~~~~ipvi~~ 195 (233)
T cd04723 118 DRLAALGEQRLVLSLDFRGGQLLKPTDFIGPEELLRRLAK-W-PEELIVLDIDRVGSGQGPDLELLERLAARADIPVIAA 195 (233)
T ss_pred HHHHhcCCCCeEEEEeccCCeeccccCcCCHHHHHHHHHH-h-CCeEEEEEcCccccCCCcCHHHHHHHHHhcCCCEEEe
Confidence 33333322379999999766 257889999998 5 99999999988655443 1 23445567887776
Q ss_pred ecCCCCCCCC
Q 022952 74 GRGERMEDLE 83 (289)
Q Consensus 74 gtGQkVdDLe 83 (289)
|-=-+.+|++
T Consensus 196 GGi~s~edi~ 205 (233)
T cd04723 196 GGVRSVEDLE 205 (233)
T ss_pred CCCCCHHHHH
Confidence 6333335544
No 180
>PRK13994 potassium-transporting ATPase subunit C; Provisional
Probab=24.31 E-value=53 Score=30.72 Aligned_cols=26 Identities=27% Similarity=0.280 Sum_probs=23.7
Q ss_pred hhHHhhccCCCCHHHHHHHHHHHHHH
Q 022952 198 RRKRVAQDSGKTEQQVSQLVAQLFQM 223 (289)
Q Consensus 198 R~~RIA~GSG~~~~eVn~Llk~f~~m 223 (289)
-..|||+-.|.++++|++|++++.+-
T Consensus 171 Qv~RVA~argls~~~V~~LV~~~t~~ 196 (222)
T PRK13994 171 QVHRVAARNGLNVARVQKLVDEHTTG 196 (222)
T ss_pred HHHHHHHHhCcCHHHHHHHHHHHccC
Confidence 58999999999999999999998653
No 181
>PRK15467 ethanolamine utilization protein EutP; Provisional
Probab=24.11 E-value=83 Score=26.39 Aligned_cols=41 Identities=15% Similarity=0.079 Sum_probs=25.6
Q ss_pred hCCCeEEEEEeCcCcHHHH-HHHHHhhhhcCCCeEEEecccCC
Q 022952 12 LNPTEVLLVVDAMTGQEAA-ALVTTFNIEIGITGAILTKLDGD 53 (289)
Q Consensus 12 ~~P~ev~LVldAttgqda~-~~a~~F~~~v~i~gvIlTKlDet 53 (289)
...+-+++|+|++.+.... .....+....+ --+++||.|..
T Consensus 63 ~~ad~il~v~d~~~~~s~~~~~~~~~~~~~~-ii~v~nK~Dl~ 104 (158)
T PRK15467 63 QDVDMLIYVHGANDPESRLPAGLLDIGVSKR-QIAVISKTDMP 104 (158)
T ss_pred hcCCEEEEEEeCCCcccccCHHHHhccCCCC-eEEEEEccccC
Confidence 3678999999999886322 22222222122 35889999974
No 182
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=24.04 E-value=1.7e+02 Score=28.32 Aligned_cols=42 Identities=21% Similarity=0.090 Sum_probs=24.1
Q ss_pred hCCCeEEEEEeCcCcHHH--HHHHHHhhhhcCCCeEEEecccCC
Q 022952 12 LNPTEVLLVVDAMTGQEA--AALVTTFNIEIGITGAILTKLDGD 53 (289)
Q Consensus 12 ~~P~ev~LVldAttgqda--~~~a~~F~~~v~i~gvIlTKlDet 53 (289)
...|-++||+|++.+... ..++..-...--.--+|++|+|.-
T Consensus 253 ~~ad~~ilV~D~~~~~~~~~~~~~~~~~~~~~~iiiv~NK~Dl~ 296 (429)
T TIGR03594 253 ERADVVLLVLDATEGITEQDLRIAGLILEAGKALVIVVNKWDLV 296 (429)
T ss_pred HhCCEEEEEEECCCCccHHHHHHHHHHHHcCCcEEEEEECcccC
Confidence 456889999999976521 122222221112345778898864
No 183
>PRK13896 cobyrinic acid a,c-diamide synthase; Provisional
Probab=24.00 E-value=1e+02 Score=31.19 Aligned_cols=38 Identities=34% Similarity=0.526 Sum_probs=28.6
Q ss_pred CeEEEEEeCcCcH-HHHHHH---HHhhh----hcCCCeEEEecccC
Q 022952 15 TEVLLVVDAMTGQ-EAAALV---TTFNI----EIGITGAILTKLDG 52 (289)
Q Consensus 15 ~ev~LVldAttgq-da~~~a---~~F~~----~v~i~gvIlTKlDe 52 (289)
.-++||+|+..|. .+..++ ..|.. .++|-|||++++..
T Consensus 106 ~PviLVv~~~~g~~s~aa~l~g~~~~~~~~~~~~~i~GvIlN~~~~ 151 (433)
T PRK13896 106 LPVVLVVDAKAGMESVAATALGFRAYADRIGRDIDVAGVIAQRAHG 151 (433)
T ss_pred CCEEEEEcCcccHHHHHHHHHHHHHHHHhccCCCcEEEEEEECCCc
Confidence 3599999999996 343333 45554 58999999999876
No 184
>PF10376 Mei5: Double-strand recombination repair protein ; InterPro: IPR018468 Mei5 is one of a pair of meiosis-specific proteins which facilitate the loading of Dmc1 on to Rad51 on DNA at double-strand breaks during recombination. Recombination is carried out by a large protein complex based around the two RecA homologues, Rad51 and Dmc1 []. This complex may play both a catalytic and a structural role in the interaction between homologous chromosomes during meiosis. Mei5 is seen to contain a coiled-coli region.
Probab=23.87 E-value=1.3e+02 Score=27.84 Aligned_cols=39 Identities=21% Similarity=0.383 Sum_probs=28.8
Q ss_pred chhHHHHHHHHhccHHHHHHHHHHHHh---CCcChHHHHHHHH
Q 022952 99 DVLSFVEKAQEVMQQEDAEEMQKKIMS---ANFDFNDFLKQTR 138 (289)
Q Consensus 99 Di~sLvEk~~~~~~~~~~~~~~~k~~~---g~F~l~Df~~Q~~ 138 (289)
++.+|++|.+.+ .++.+.++...+.. .+||+.+|+++|.
T Consensus 171 ~Lq~lI~Kwr~~-~q~~l~eL~~~~~~~e~~~~TM~eL~~~l~ 212 (221)
T PF10376_consen 171 QLQSLIKKWRSA-SQEALYELQSEMSEEEGEKFTMGELIKRLG 212 (221)
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHhhccccCccHHHHHHHhC
Confidence 677777777766 34556778887777 3799999998763
No 185
>PRK13877 conjugal transfer relaxosome component TraJ; Provisional
Probab=23.67 E-value=1.3e+02 Score=25.20 Aligned_cols=30 Identities=13% Similarity=0.168 Sum_probs=25.4
Q ss_pred ccCCCCHHHHHHHHHHHHHHHHHHHHHhcc
Q 022952 204 QDSGKTEQQVSQLVAQLFQMRVRMKNLMGV 233 (289)
Q Consensus 204 ~GSG~~~~eVn~Llk~f~~m~kmmk~~~~~ 233 (289)
++.|.++.+|..||.+++.++..|..+++.
T Consensus 84 ~~~~~~~~~i~~ll~~i~~~q~~~~~~~~~ 113 (114)
T PRK13877 84 RTAQFGEATILALLGRIEATQDEMSEVMKK 113 (114)
T ss_pred CcCCCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345789999999999999999988887753
No 186
>PRK01033 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=23.63 E-value=4e+02 Score=24.57 Aligned_cols=69 Identities=16% Similarity=0.369 Sum_probs=44.1
Q ss_pred HHHHHHHhCCCeEEEEEeCcCc-----------------HHHHHHHHHhhhhcCCCeEEEeccc--CCCCCCcc---ccc
Q 022952 5 LKDVKRVLNPTEVLLVVDAMTG-----------------QEAAALVTTFNIEIGITGAILTKLD--GDSRGGAA---LSV 62 (289)
Q Consensus 5 Lk~i~~~~~P~ev~LVldAttg-----------------qda~~~a~~F~~~v~i~gvIlTKlD--etargG~a---LS~ 62 (289)
++++.+...+..+.+-+|.-.| .+..+.++.+.+ .+++.+|+|=+| ++-+|=.. -.+
T Consensus 113 ~~~~~~~~~~~~i~vsiD~k~g~~~~~~v~~~gw~~~~~~~~~e~~~~~~~-~g~~~ii~~~i~~~G~~~G~d~~~i~~~ 191 (258)
T PRK01033 113 ITEAAERFGSQSVVVSIDVKKNLGGKFDVYTHNGTKKLKKDPLELAKEYEA-LGAGEILLNSIDRDGTMKGYDLELLKSF 191 (258)
T ss_pred HHHHHHHhCCCcEEEEEEEecCCCCcEEEEEcCCeecCCCCHHHHHHHHHH-cCCCEEEEEccCCCCCcCCCCHHHHHHH
Confidence 4455555544568888886544 257788888886 999999999555 44443211 223
Q ss_pred eeccCCCeEEEe
Q 022952 63 KEVSGKPIKLVG 74 (289)
Q Consensus 63 ~~~t~~PI~FIg 74 (289)
...++.||.+-|
T Consensus 192 ~~~~~ipvIasG 203 (258)
T PRK01033 192 RNALKIPLIALG 203 (258)
T ss_pred HhhCCCCEEEeC
Confidence 344677886666
No 187
>PRK10307 putative glycosyl transferase; Provisional
Probab=23.60 E-value=4.7e+02 Score=24.87 Aligned_cols=73 Identities=12% Similarity=0.075 Sum_probs=46.9
Q ss_pred eccCCCeEEEecCC-CCCCCCCCChhHHHHHhhCCCchhHHHHHHHHhcc-HHHHHHHHHHHH---hCCcChHHHHHHHH
Q 022952 64 EVSGKPIKLVGRGE-RMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQ-QEDAEEMQKKIM---SANFDFNDFLKQTR 138 (289)
Q Consensus 64 ~~t~~PI~FIgtGQ-kVdDLe~f~p~~la~rlLG~gDi~sLvEk~~~~~~-~~~~~~~~~k~~---~g~F~l~Df~~Q~~ 138 (289)
..+|+||.-..+|- .+.++.. . ...+...+|+.+|.+.+.+..+ .+..+++.++-. ..+||.+...+++.
T Consensus 328 ma~G~PVi~s~~~g~~~~~~i~-~----~G~~~~~~d~~~la~~i~~l~~~~~~~~~~~~~a~~~~~~~fs~~~~~~~~~ 402 (412)
T PRK10307 328 LASGRNVVATAEPGTELGQLVE-G----IGVCVEPESVEALVAAIAALARQALLRPKLGTVAREYAERTLDKENVLRQFI 402 (412)
T ss_pred HHcCCCEEEEeCCCchHHHHHh-C----CcEEeCCCCHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHcCHHHHHHHHH
Confidence 57899997665542 2323222 1 2445567899999999988763 444445544433 35799999888886
Q ss_pred HHH
Q 022952 139 TVA 141 (289)
Q Consensus 139 ~i~ 141 (289)
.+.
T Consensus 403 ~~~ 405 (412)
T PRK10307 403 ADI 405 (412)
T ss_pred HHH
Confidence 654
No 188
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=23.58 E-value=1.2e+02 Score=24.96 Aligned_cols=40 Identities=23% Similarity=-0.035 Sum_probs=22.9
Q ss_pred CCeEEEEEeCcCcHH--HHHHHHHhhhhcCCCeEEEecccCC
Q 022952 14 PTEVLLVVDAMTGQE--AAALVTTFNIEIGITGAILTKLDGD 53 (289)
Q Consensus 14 P~ev~LVldAttgqd--a~~~a~~F~~~v~i~gvIlTKlDet 53 (289)
.|-+++|+|+..... -..+.......=..--+|+||+|..
T Consensus 13 aD~vl~V~D~~~~~~~~~~~l~~~~~~~~~p~iiv~NK~Dl~ 54 (156)
T cd01859 13 SDVVLEVLDARDPELTRSRKLERYVLELGKKLLIVLNKADLV 54 (156)
T ss_pred CCEEEEEeeCCCCcccCCHHHHHHHHhCCCcEEEEEEhHHhC
Confidence 678999999976431 1122221211012346888999973
No 189
>PF13580 SIS_2: SIS domain; PDB: 1TK9_C 2I22_B 2I2W_A 1X92_A 3BJZ_D 2XBL_B 2X3Y_F 2YVA_B 3CVJ_D 3TRJ_D ....
Probab=23.54 E-value=2e+02 Score=23.84 Aligned_cols=36 Identities=19% Similarity=0.283 Sum_probs=22.7
Q ss_pred hCCCeEEEEEeCcCcH-HHHHHHHHhhhhcCCCeEEEe
Q 022952 12 LNPTEVLLVVDAMTGQ-EAAALVTTFNIEIGITGAILT 48 (289)
Q Consensus 12 ~~P~ev~LVldAttgq-da~~~a~~F~~~v~i~gvIlT 48 (289)
++|.++++|++++-.. ..++.++.-++ .+..-+-+|
T Consensus 101 ~~~gDvli~iS~SG~s~~vi~a~~~Ak~-~G~~vIalT 137 (138)
T PF13580_consen 101 IRPGDVLIVISNSGNSPNVIEAAEEAKE-RGMKVIALT 137 (138)
T ss_dssp --TT-EEEEEESSS-SHHHHHHHHHHHH-TT-EEEEEE
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHH-CCCEEEEEe
Confidence 7899999999998776 56666666655 676666655
No 190
>PRK03003 GTP-binding protein Der; Reviewed
Probab=23.49 E-value=1.9e+02 Score=29.00 Aligned_cols=42 Identities=10% Similarity=-0.036 Sum_probs=25.4
Q ss_pred hCCCeEEEEEeCcCcH--HHHHHHHHhhhhcCCCeEEEecccCC
Q 022952 12 LNPTEVLLVVDAMTGQ--EAAALVTTFNIEIGITGAILTKLDGD 53 (289)
Q Consensus 12 ~~P~ev~LVldAttgq--da~~~a~~F~~~v~i~gvIlTKlDet 53 (289)
...+-++||+|++.+. .-..++......=-+--+|+||+|..
T Consensus 292 ~~ad~vilV~Da~~~~s~~~~~~~~~~~~~~~piIiV~NK~Dl~ 335 (472)
T PRK03003 292 EAAEVAVVLIDASEPISEQDQRVLSMVIEAGRALVLAFNKWDLV 335 (472)
T ss_pred hcCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECcccC
Confidence 3568899999998774 22233333322112336778999974
No 191
>PRK14098 glycogen synthase; Provisional
Probab=23.33 E-value=6.7e+02 Score=25.35 Aligned_cols=79 Identities=19% Similarity=0.190 Sum_probs=45.2
Q ss_pred eeccCCCeEEEecCCCCCCCCCCChhHHHHHhhCCCchhHHHHHHHHhc----cHHHHHHHHHHHHhCCcChHHHHHHHH
Q 022952 63 KEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVM----QQEDAEEMQKKIMSANFDFNDFLKQTR 138 (289)
Q Consensus 63 ~~~t~~PI~FIgtGQkVdDLe~f~p~~la~rlLG~gDi~sLvEk~~~~~----~~~~~~~~~~k~~~g~F~l~Df~~Q~~ 138 (289)
....|+|+.-..+|--.|-+.....+.-...+...+|..+|.+.+..++ +.+...++..+-+.-.|+.+...+++.
T Consensus 401 Ama~G~ppVv~~~GGl~d~v~~~~~~~~~G~l~~~~d~~~la~ai~~~l~~~~~~~~~~~~~~~~~~~~fsw~~~a~~y~ 480 (489)
T PRK14098 401 AMSYGTIPVAYAGGGIVETIEEVSEDKGSGFIFHDYTPEALVAKLGEALALYHDEERWEELVLEAMERDFSWKNSAEEYA 480 (489)
T ss_pred HHhCCCCeEEecCCCCceeeecCCCCCCceeEeCCCCHHHHHHHHHHHHHHHcCHHHHHHHHHHHhcCCCChHHHHHHHH
Confidence 4556765544444432233333222222344555678888888887643 334444555554556899988888887
Q ss_pred HHH
Q 022952 139 TVA 141 (289)
Q Consensus 139 ~i~ 141 (289)
.+-
T Consensus 481 ~lY 483 (489)
T PRK14098 481 QLY 483 (489)
T ss_pred HHH
Confidence 654
No 192
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=23.33 E-value=57 Score=28.26 Aligned_cols=69 Identities=26% Similarity=0.267 Sum_probs=42.0
Q ss_pred HhCCCeEEEEEeCcCcHHHH--HHHHHhhhhcCCCeEEEecccCC---CCCCccccceeccCC-CeEEEe--cCCCCCCC
Q 022952 11 VLNPTEVLLVVDAMTGQEAA--ALVTTFNIEIGITGAILTKLDGD---SRGGAALSVKEVSGK-PIKLVG--RGERMEDL 82 (289)
Q Consensus 11 ~~~P~ev~LVldAttgqda~--~~a~~F~~~v~i~gvIlTKlDet---argG~aLS~~~~t~~-PI~FIg--tGQkVdDL 82 (289)
+..-+-|+||.||+..+... ..+..|+. + -==|+||+|.. +..--+-......|. +|.+++ +||.|+.|
T Consensus 61 a~dad~V~ll~dat~~~~~~pP~fa~~f~~--p-vIGVITK~Dl~~~~~~i~~a~~~L~~aG~~~if~vS~~~~eGi~eL 137 (143)
T PF10662_consen 61 AQDADVVLLLQDATEPRSVFPPGFASMFNK--P-VIGVITKIDLPSDDANIERAKKWLKNAGVKEIFEVSAVTGEGIEEL 137 (143)
T ss_pred HhhCCEEEEEecCCCCCccCCchhhcccCC--C-EEEEEECccCccchhhHHHHHHHHHHcCCCCeEEEECCCCcCHHHH
Confidence 34678899999999988555 47888875 3 33478999998 333333333333343 343333 35555433
No 193
>PLN02949 transferase, transferring glycosyl groups
Probab=23.20 E-value=7.8e+02 Score=24.82 Aligned_cols=95 Identities=12% Similarity=0.108 Sum_probs=53.1
Q ss_pred CeEEEecccCCCCCCccccceeccCCCeEEEecCCCCCCCCCCChhHHHHHhhCCCchhHHHHHHHHhcc--HHHHHHHH
Q 022952 43 TGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQ--QEDAEEMQ 120 (289)
Q Consensus 43 ~gvIlTKlDetargG~aLS~~~~t~~PI~FIgtGQkVdDLe~f~p~~la~rlLG~gDi~sLvEk~~~~~~--~~~~~~~~ 120 (289)
+.+|+|-.+|+ .|-++-=....|+|+.=...|=-..|+-.-....-...+. .|+.+|.+.+.+.++ +++.+++.
T Consensus 356 ~~~v~~s~~E~--FGivvlEAMA~G~PVIa~~~gGp~~eIV~~~~~g~tG~l~--~~~~~la~ai~~ll~~~~~~r~~m~ 431 (463)
T PLN02949 356 VAGLHSMIDEH--FGISVVEYMAAGAVPIAHNSAGPKMDIVLDEDGQQTGFLA--TTVEEYADAILEVLRMRETERLEIA 431 (463)
T ss_pred cEEEeCCccCC--CChHHHHHHHcCCcEEEeCCCCCcceeeecCCCCcccccC--CCHHHHHHHHHHHHhCCHHHHHHHH
Confidence 45667777766 4554444455788766665552223332110001112222 488888888888764 34444444
Q ss_pred HHHHh--CCcChHHHHHHHHHHH
Q 022952 121 KKIMS--ANFDFNDFLKQTRTVA 141 (289)
Q Consensus 121 ~k~~~--g~F~l~Df~~Q~~~i~ 141 (289)
++-.+ .+|+.+-|.+++....
T Consensus 432 ~~ar~~~~~FS~e~~~~~~~~~i 454 (463)
T PLN02949 432 AAARKRANRFSEQRFNEDFKDAI 454 (463)
T ss_pred HHHHHHHHHcCHHHHHHHHHHHH
Confidence 33222 3699999999987643
No 194
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=23.12 E-value=78 Score=25.15 Aligned_cols=39 Identities=18% Similarity=0.212 Sum_probs=24.4
Q ss_pred CCCeEEEEEeCcCcHHH--HHHHHHhhhhcCCCeEEEecccCCC
Q 022952 13 NPTEVLLVVDAMTGQEA--AALVTTFNIEIGITGAILTKLDGDS 54 (289)
Q Consensus 13 ~P~ev~LVldAttgqda--~~~a~~F~~~v~i~gvIlTKlDeta 54 (289)
+.+-+++|+|++.+... ....+.+. .+--+|+||+|...
T Consensus 62 ~ad~vilv~d~~~~~s~~~~~~~~~~~---~p~ilv~NK~Dl~~ 102 (142)
T TIGR02528 62 DADVIALVQSATDPESRFPPGFASIFV---KPVIGLVTKIDLAE 102 (142)
T ss_pred cCCEEEEEecCCCCCcCCChhHHHhcc---CCeEEEEEeeccCC
Confidence 67889999999877632 22222222 24456789999753
No 195
>smart00788 Adenylsucc_synt Adenylosuccinate synthetase. Adenylosuccinate synthetase plays an important role in purine biosynthesis, by catalyzing the GTP-dependent conversion of IMP and aspartic acid to AMP. Adenylosuccinate synthetase has been characterized from various sources ranging from Escherichia coli (gene purA) to vertebrate tissues. In vertebrates, two isozymes are present - one involved in purine biosynthesis and the other in the purine nucleotide cycle. The crystal structure of adenylosuccinate synthetase from E. coli reveals that the dominant structural element of each monomer of the homodimer is a central beta-sheet of 10 strands. The first nine strands of the sheet are mutually parallel with right-handed crossover connections between the strands. The 10th strand is antiparallel with respect to the first nine strands. In addition, the enzyme has two antiparallel beta-sheets, comprised of two strands and three strands each, 11 alpha-helices and two short 3/10-helices. Furt
Probab=22.98 E-value=59 Score=33.03 Aligned_cols=14 Identities=64% Similarity=0.698 Sum_probs=11.7
Q ss_pred CCCeEEEecccCCC
Q 022952 41 GITGAILTKLDGDS 54 (289)
Q Consensus 41 ~i~gvIlTKlDeta 54 (289)
+++.+.+||+|--+
T Consensus 321 g~~~lalTkLDvL~ 334 (421)
T smart00788 321 GITGLALTKLDVLD 334 (421)
T ss_pred CCCeEEEECceecC
Confidence 78999999998543
No 196
>PRK04128 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=22.84 E-value=2.2e+02 Score=26.01 Aligned_cols=76 Identities=12% Similarity=0.142 Sum_probs=49.1
Q ss_pred HHHHHHHHhCCCeEEEEEeCcC------------cHHHHHHHHHhhhhcCCCeEEEecccCCCCCCccccceec-cCCCe
Q 022952 4 ELKDVKRVLNPTEVLLVVDAMT------------GQEAAALVTTFNIEIGITGAILTKLDGDSRGGAALSVKEV-SGKPI 70 (289)
Q Consensus 4 ELk~i~~~~~P~ev~LVldAtt------------gqda~~~a~~F~~~v~i~gvIlTKlDetargG~aLS~~~~-t~~PI 70 (289)
-++++.+.. +. +++.+|+-- +.+..+.++.+.+ . +..+|+|=+|-+-..-|.=.+... .+.||
T Consensus 110 ~l~~~~~~~-g~-ivvslD~~~g~v~~~gw~~~~~~~~~~~~~~~~~-~-~~~ii~t~i~~dGt~~G~d~l~~~~~~~pv 185 (228)
T PRK04128 110 FLEKVTSEF-EG-ITVSLDVKGGRIAVKGWLEESSIKVEDAYEMLKN-Y-VNRFIYTSIERDGTLTGIEEIERFWGDEEF 185 (228)
T ss_pred HHHHHHHHc-CC-EEEEEEccCCeEecCCCeEcCCCCHHHHHHHHHH-H-hCEEEEEeccchhcccCHHHHHHhcCCCCE
Confidence 344555544 44 999999833 3356678888887 5 789999999988777664333332 47888
Q ss_pred EEEecCCCCCCCC
Q 022952 71 KLVGRGERMEDLE 83 (289)
Q Consensus 71 ~FIgtGQkVdDLe 83 (289)
.+-|-=-..+||.
T Consensus 186 iasGGv~~~~Dl~ 198 (228)
T PRK04128 186 IYAGGVSSAEDVK 198 (228)
T ss_pred EEECCCCCHHHHH
Confidence 7766323335553
No 197
>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional
Probab=22.82 E-value=1.5e+02 Score=30.18 Aligned_cols=41 Identities=15% Similarity=0.111 Sum_probs=25.1
Q ss_pred hCCCeEEEEEeCcCc--H-HHHHHHHHhhhhcCCC--eEEEecccCC
Q 022952 12 LNPTEVLLVVDAMTG--Q-EAAALVTTFNIEIGIT--GAILTKLDGD 53 (289)
Q Consensus 12 ~~P~ev~LVldAttg--q-da~~~a~~F~~~v~i~--gvIlTKlDet 53 (289)
...|-++||+||..| + ...+.+... ..+++. -+++||+|-.
T Consensus 139 ~~~D~alLVVda~~g~~~~qT~ehl~i~-~~lgi~~iIVvlNKiDlv 184 (460)
T PTZ00327 139 AVMDAALLLIAANESCPQPQTSEHLAAV-EIMKLKHIIILQNKIDLV 184 (460)
T ss_pred hhCCEEEEEEECCCCccchhhHHHHHHH-HHcCCCcEEEEEeccccc
Confidence 356889999999874 1 222222211 224554 3699999974
No 198
>cd03785 GT1_MurG MurG is an N-acetylglucosaminyltransferase, the last enzyme involved in the intracellular phase of peptidoglycan biosynthesis. It transfers N-acetyl-D-glucosamine (GlcNAc) from UDP-GlcNAc to the C4 hydroxyl of a lipid-linked N-acetylmuramoyl pentapeptide (NAM). The resulting disaccharide is then transported across the cell membrane, where it is polymerized into NAG-NAM cell-wall repeat structure. MurG belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains, each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=22.73 E-value=1.9e+02 Score=26.52 Aligned_cols=57 Identities=11% Similarity=0.128 Sum_probs=38.8
Q ss_pred CCccccceeccCCCeEEEecCCCCCCCCCCChhHHHHH----hhCCC--chhHHHHHHHHhcc
Q 022952 56 GGAALSVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGR----ILGMG--DVLSFVEKAQEVMQ 112 (289)
Q Consensus 56 gG~aLS~~~~t~~PI~FIgtGQkVdDLe~f~p~~la~r----lLG~g--Di~sLvEk~~~~~~ 112 (289)
||..+.=+...|+|+..+..+..+++.....++.++.. ++..+ |...|.+.+.+.++
T Consensus 261 g~~t~~Eam~~G~Pvv~~~~~~~~~~~~~~~~~~l~~~g~g~~v~~~~~~~~~l~~~i~~ll~ 323 (350)
T cd03785 261 GASTVAELAALGLPAILIPLPYAADDHQTANARALVKAGAAVLIPQEELTPERLAAALLELLS 323 (350)
T ss_pred CHhHHHHHHHhCCCEEEeecCCCCCCcHHHhHHHHHhCCCEEEEecCCCCHHHHHHHHHHHhc
Confidence 45566667789999998876665555555556666653 23333 78888888887764
No 199
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=22.58 E-value=1.4e+02 Score=23.58 Aligned_cols=14 Identities=14% Similarity=0.159 Sum_probs=10.0
Q ss_pred CCeEEEEEeCcCcH
Q 022952 14 PTEVLLVVDAMTGQ 27 (289)
Q Consensus 14 P~ev~LVldAttgq 27 (289)
-+-+++|+|.+..+
T Consensus 71 ~~~~i~v~d~~~~~ 84 (160)
T cd00876 71 GDGFILVYSITDRE 84 (160)
T ss_pred CCEEEEEEECCCHH
Confidence 46678888887665
No 200
>PF12167 DUF3596: Domain of unknown function (DUF3596); InterPro: IPR022000 This N-terminal domain is found in Bacteriophage P27p02, it is functionally uncharacterised, though it is considered to be an integrase. Integrase is necessary for integration of the phage into the host genome by site-specific recombination. In conjunction with excisionase, integrase is also necessary for excision of the prophage from the host genome. This domain is found in related proteins in other bacteriophage, and prophage regions of bacterial genomes. The domain is approximately 90 amino acids in length and is found is associated with the C-terminal domain characterised by PF00589 from PFAM.
Probab=22.51 E-value=1.8e+02 Score=21.62 Aligned_cols=49 Identities=27% Similarity=0.469 Sum_probs=30.3
Q ss_pred CCCeEEEecCCCC-CCCCCCChhHHHHHhhCCCchhHHHHHHHHhccHHHHHHHHHHHHhCCcChHHH
Q 022952 67 GKPIKLVGRGERM-EDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQKKIMSANFDFNDF 133 (289)
Q Consensus 67 ~~PI~FIgtGQkV-dDLe~f~p~~la~rlLG~gDi~sLvEk~~~~~~~~~~~~~~~k~~~g~F~l~Df 133 (289)
.+-|.|.=-|.+. +-+ |..|-..=..+|+.. ..++..+|..|.||+.++
T Consensus 10 ~L~i~F~y~G~R~re~l-------------~l~dT~~N~k~a~~~-----~~~I~~~I~~G~Fdy~~~ 59 (64)
T PF12167_consen 10 KLRIDFTYQGKRCRESL-------------GLPDTPANRKKAERL-----RAEIEAEIALGTFDYAKY 59 (64)
T ss_pred EEEEEEEECCEEEEEeC-------------CCCCCHHHHHHHHHH-----HHHHHHHHHhCCCcHHHh
Confidence 3566777777776 444 333333334444333 456788899999998775
No 201
>KOG1143 consensus Predicted translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=22.50 E-value=1.2e+02 Score=31.17 Aligned_cols=42 Identities=36% Similarity=0.400 Sum_probs=31.1
Q ss_pred CCCeEEEEEeCcCcH-----HHHHHHHHhhhhcCCCeEEEecccCCCCCC
Q 022952 13 NPTEVLLVVDAMTGQ-----EAAALVTTFNIEIGITGAILTKLDGDSRGG 57 (289)
Q Consensus 13 ~P~ev~LVldAttgq-----da~~~a~~F~~~v~i~gvIlTKlDetargG 57 (289)
.|+--+||++|.+|- +-+-++.+.+- | ==+++||+|-+++-|
T Consensus 274 ~Ph~A~LvVsA~~Gi~~tTrEHLgl~~AL~i--P-fFvlvtK~Dl~~~~~ 320 (591)
T KOG1143|consen 274 TPHFACLVVSADRGITWTTREHLGLIAALNI--P-FFVLVTKMDLVDRQG 320 (591)
T ss_pred CCceEEEEEEcCCCCccccHHHHHHHHHhCC--C-eEEEEEeeccccchh
Confidence 499999999999996 23335666553 3 356789999998855
No 202
>COG1160 Predicted GTPases [General function prediction only]
Probab=22.35 E-value=1.8e+02 Score=29.96 Aligned_cols=42 Identities=17% Similarity=0.190 Sum_probs=31.9
Q ss_pred hCCCeEEEEEeCcCcH--HHHHHHHHhhhhcCCCeEEEecccCC
Q 022952 12 LNPTEVLLVVDAMTGQ--EAAALVTTFNIEIGITGAILTKLDGD 53 (289)
Q Consensus 12 ~~P~ev~LVldAttgq--da~~~a~~F~~~v~i~gvIlTKlDet 53 (289)
-..|-++||+|+..|- +-.++|+.+...=.+-=++++|+|.-
T Consensus 82 ~eADvilfvVD~~~Git~~D~~ia~~Lr~~~kpviLvvNK~D~~ 125 (444)
T COG1160 82 EEADVILFVVDGREGITPADEEIAKILRRSKKPVILVVNKIDNL 125 (444)
T ss_pred HhCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCEEEEEEcccCc
Confidence 4578899999999997 33346777665326778999999984
No 203
>PF04675 DNA_ligase_A_N: DNA ligase N terminus; InterPro: IPR012308 DNA ligase (polydeoxyribonucleotide synthase) is the enzyme that joins two DNA fragments by catalysing the formation of an internucleotide ester bond between phosphate and deoxyribose. It is active during DNA replication, DNA repair and DNA recombination. There are two forms of DNA ligase, one requires ATP (6.5.1.1 from EC), the other NAD (6.5.1.2 from EC), the latter being restricted to eubacteria. Eukaryotic, archaebacterial, viral and some eubacterial DNA ligases are ATP-dependent. The first step in the ligation reaction is the formation of a covalent enzyme-AMP complex. The co-factor ATP is cleaved to pyrophosphate and AMP, with the AMP being covalently joined to a highly conserved lysine residue in the active site of the ligase. The activated AMP residue is then transferred to the 5'phosphate of the nick, before the nick is sealed by phosphodiester-bond formation and AMP elimination [,]. Vertebrate cells encode three well-characterised DNA ligases (DNA ligases I, III and IV), all of which are related in structure and sequence. With the exception of the atypically small PBCV-1 viral enzyme, two regions of primary sequence are common to all members of the family. The catalytic region comprises six conserved sequence motifs (I, III, IIIa, IV, V-VI), motif I includes the lysine residue that is adenylated in the first step of the ligation reaction. The function of the second, less well-conserved region is unknown. When folded, each protein comprises of two distinct sub-domains: a large amino-terminal sub-domain ('domain 1') and a smaller carboxy-terminal sub-domain ('domain 2'). The ATP-binding site of the enzyme lies in the cleft between the two sub-domains. Domain 1 consists of two antiparallel beta sheets flanked by alpha helices, whereas domain 2 consists of a five-stranded beta barrel and a single alpha helix, which form the oligonucleotide-binding fold [, ]. This region is found in many but not all ATP-dependent DNA ligase enzymes (6.5.1.1 from EC). It is thought to be involved in DNA binding and in catalysis. In human DNA ligase I (P18858 from SWISSPROT), and in Saccharomyces cerevisiae (Baker's yeast) (P04819 from SWISSPROT), this region was necessary for catalysis, and separated from the amino terminus by targeting elements. In Vaccinia virus (P16272 from SWISSPROT) this region was not essential for catalysis, but deletion decreases the affinity for nicked DNA and decreased the rate of strand joining at a step subsequent to enzyme-adenylate formation []. ; GO: 0003677 DNA binding, 0003910 DNA ligase (ATP) activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 2CFM_A 3RR5_A 2HIX_A 2HIV_A 3L2P_A 1X9N_A 4EQ5_A 3GDE_A.
Probab=22.32 E-value=2.9e+02 Score=23.48 Aligned_cols=46 Identities=11% Similarity=0.285 Sum_probs=32.0
Q ss_pred hCCcChHHHHHHHHHHHhcCchHHHHhcCCCCCCCCchhhHHhHHHHHHHHHHHhCCCHHhhcC
Q 022952 125 SANFDFNDFLKQTRTVARMGSMSRVIGMIPGMGKITPAQVREAEKSLKIMEAMIEAMTPEEREK 188 (289)
Q Consensus 125 ~g~F~l~Df~~Q~~~i~kmG~l~~i~~miPG~~~~~~~~~~~~e~~~k~~~~Ii~SMT~~Er~n 188 (289)
....|+.|.++.+..|.+..+ . ...+++...+..++..||+.|..-
T Consensus 108 ~~~lTi~~V~~~L~~la~~~g--------~----------~s~~~k~~~l~~ll~~~s~~E~k~ 153 (177)
T PF04675_consen 108 PSPLTISEVNETLDELAAASG--------K----------GSQDEKIDILKELLRRCSPEEAKW 153 (177)
T ss_dssp SS--BHHHHHHHHHHHHH--S--------T----------THHHHHHHHHHHHHTTS-HHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhhC--------c----------cchHHHHHHHHHHHHhCCHHHHHH
Confidence 467899999999999887644 1 123567889999999999999763
No 204
>PF02601 Exonuc_VII_L: Exonuclease VII, large subunit; InterPro: IPR020579 Exonuclease VII 3.1.11.6 from EC is composed of two nonidentical subunits; one large subunit and 4 small ones []. Exonuclease VII catalyses exonucleolytic cleavage in either 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. The large subunit also contains the OB-fold domains (IPR004365 from INTERPRO) that bind to nucleic acids at the N terminus. This entry represents Exonuclease VII, large subunit, C-terminal. ; GO: 0008855 exodeoxyribonuclease VII activity
Probab=22.24 E-value=6.6e+02 Score=23.60 Aligned_cols=90 Identities=23% Similarity=0.354 Sum_probs=56.6
Q ss_pred hCCCeEEEEEeCcC-cHH-HHHHHHHhhhhc------CCCeEEEecccCCCCCCccc------------cceeccCCCeE
Q 022952 12 LNPTEVLLVVDAMT-GQE-AAALVTTFNIEI------GITGAILTKLDGDSRGGAAL------------SVKEVSGKPIK 71 (289)
Q Consensus 12 ~~P~ev~LVldAtt-gqd-a~~~a~~F~~~v------~i~gvIlTKlDetargG~aL------------S~~~~t~~PI~ 71 (289)
-.|.--+.+.++.. |.+ +.+++++....- ++|.+|+. ||||.+ -+++.+.+| .
T Consensus 38 r~~~~~~~~~p~~vQG~~A~~~I~~al~~~~~~~~~~~~Dviii~------RGGGs~eDL~~FN~e~varai~~~~~P-v 110 (319)
T PF02601_consen 38 RNPIVEIILYPASVQGEGAAASIVSALRKANEMGQADDFDVIIII------RGGGSIEDLWAFNDEEVARAIAASPIP-V 110 (319)
T ss_pred hCCCcEEEEEeccccccchHHHHHHHHHHHHhccccccccEEEEe------cCCCChHHhcccChHHHHHHHHhCCCC-E
Confidence 45644455555554 553 334666665521 48889885 788853 356677788 4
Q ss_pred EEecCCCCC--------CCCCCChhHHHHHhhCCCchhHHHHHHHHh
Q 022952 72 LVGRGERME--------DLEPFYPDRMAGRILGMGDVLSFVEKAQEV 110 (289)
Q Consensus 72 FIgtGQkVd--------DLe~f~p~~la~rlLG~gDi~sLvEk~~~~ 110 (289)
+.|.|-.+| |+....|-..+..+. .+...+.+++.+.
T Consensus 111 isaIGHe~D~ti~D~vAd~ra~TPtaaAe~~~--~~~~~~~~~l~~~ 155 (319)
T PF02601_consen 111 ISAIGHETDFTIADFVADLRAPTPTAAAELIV--PDRRELLQRLDEL 155 (319)
T ss_pred EEecCCCCCchHHHHHHHhhCCCHHHHHHHHh--hhHHHHHHHHHHH
Confidence 577776653 677888888888877 4566666555443
No 205
>TIGR02129 hisA_euk phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase, eukaryotic type. This enzyme acts in the biosynthesis of histidine and has been characterized in S. cerevisiae and Arabidopsis where it complements the E. coli HisA gene. In eukaryotes the gene is known as HIS6. In bacteria, this gene is found in Fibrobacter succinogenes, presumably due to lateral gene transfer from plants in the rumen gut.
Probab=22.14 E-value=1.7e+02 Score=27.78 Aligned_cols=79 Identities=15% Similarity=0.226 Sum_probs=57.6
Q ss_pred HHHHHHHHhCCCeEEEEEeCc-----------------CcHHHH-HHHHHhhhhcCCCeEEEecccCCCCCCcc-----c
Q 022952 4 ELKDVKRVLNPTEVLLVVDAM-----------------TGQEAA-ALVTTFNIEIGITGAILTKLDGDSRGGAA-----L 60 (289)
Q Consensus 4 ELk~i~~~~~P~ev~LVldAt-----------------tgqda~-~~a~~F~~~v~i~gvIlTKlDetargG~a-----L 60 (289)
-++++.+...|+.+.+.+|+- ++.++. +.++.|.+ . +..+|+|=+|-+-...|. -
T Consensus 117 ~~~~i~~~fG~~~IvvsiD~k~~~~g~~~V~~~GW~~~t~~~~~~e~~~~~~~-~-~~~il~TdI~rDGtl~G~dlel~~ 194 (253)
T TIGR02129 117 RLKEIVSLVGKDRLIVDLSCRKTQDGRWIVAMNKWQTITDLELNAETLEELSK-Y-CDEFLIHAADVEGLCKGIDEELVS 194 (253)
T ss_pred HHHHHHHHhCCCCEEEEEEEEEcCCCcEEEEECCCcccCCCChHHHHHHHHHh-h-CCEEEEeeecccCccccCCHHHHH
Confidence 355566666678888888875 222566 88899987 5 999999999988776654 3
Q ss_pred cceeccCCCeEEEecCCCCCCCCC
Q 022952 61 SVKEVSGKPIKLVGRGERMEDLEP 84 (289)
Q Consensus 61 S~~~~t~~PI~FIgtGQkVdDLe~ 84 (289)
.+...+++||..-|-=-+++||..
T Consensus 195 ~l~~~~~ipVIASGGv~s~eDi~~ 218 (253)
T TIGR02129 195 KLGEWSPIPITYAGGAKSIDDLDL 218 (253)
T ss_pred HHHhhCCCCEEEECCCCCHHHHHH
Confidence 456668899988885555577754
No 206
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=22.06 E-value=2.3e+02 Score=21.12 Aligned_cols=46 Identities=13% Similarity=-0.024 Sum_probs=28.2
Q ss_pred CCCeEEEEEeCcCcHHHHHHH-------HHhhhhcCCCeEEEecccCCCCCCc
Q 022952 13 NPTEVLLVVDAMTGQEAAALV-------TTFNIEIGITGAILTKLDGDSRGGA 58 (289)
Q Consensus 13 ~P~ev~LVldAttgqda~~~a-------~~F~~~v~i~gvIlTKlDetargG~ 58 (289)
..+-+++|+|++......+.. ..+...--+--+|+||+|.......
T Consensus 68 ~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nk~D~~~~~~~ 120 (157)
T cd00882 68 GADGIILVYDVTDRESFENVKEWLLLILINKEGENIPIILVGNKIDLPEERVV 120 (157)
T ss_pred CCCEEEEEEECcCHHHHHHHHHHHHHHHHhhccCCCcEEEEEeccccccccch
Confidence 467789999999887333221 1112112344788899998665443
No 207
>COG0647 NagD Predicted sugar phosphatases of the HAD superfamily [Carbohydrate transport and metabolism]
Probab=22.00 E-value=82 Score=30.00 Aligned_cols=52 Identities=19% Similarity=0.357 Sum_probs=36.6
Q ss_pred cCCCeEEEecccCCCCCCccc---cceeccCCCeEEEecCCCCCCCCCCChhHHHHHhhCCCch
Q 022952 40 IGITGAILTKLDGDSRGGAAL---SVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDV 100 (289)
Q Consensus 40 v~i~gvIlTKlDetargG~aL---S~~~~t~~PI~FIgtGQkVdDLe~f~p~~la~rlLG~gDi 100 (289)
+.++|+|. ++....-+|. .-..+.|+|+.|+|+.- ..+|+.++.+|.+.|.+
T Consensus 13 ~DlDGvl~---~G~~~ipga~e~l~~L~~~g~~~iflTNn~------~~s~~~~~~~L~~~~~~ 67 (269)
T COG0647 13 FDLDGVLY---RGNEAIPGAAEALKRLKAAGKPVIFLTNNS------TRSREVVAARLSSLGGV 67 (269)
T ss_pred EcCcCceE---eCCccCchHHHHHHHHHHcCCeEEEEeCCC------CCCHHHHHHHHHhhcCC
Confidence 57778777 4444444444 44458999999999974 46778888888884444
No 208
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=21.94 E-value=2.1e+02 Score=22.99 Aligned_cols=15 Identities=27% Similarity=0.521 Sum_probs=11.9
Q ss_pred CCCeEEEEEeCcCcH
Q 022952 13 NPTEVLLVVDAMTGQ 27 (289)
Q Consensus 13 ~P~ev~LVldAttgq 27 (289)
..+-+++|+|++...
T Consensus 66 ~~~~~i~v~D~~~~~ 80 (158)
T cd00878 66 NTNGIIFVVDSSDRE 80 (158)
T ss_pred cCCEEEEEEECCCHH
Confidence 457789999999875
No 209
>cd01391 Periplasmic_Binding_Protein_Type_1 Type 1 periplasmic binding fold superfamily. Type 1 periplasmic binding fold superfamily. This model and hierarchy represent the ligand binding domains of the LacI family of transcriptional regulators, periplasmic binding proteins of the ABC-type transport systems, the family C G-protein couples receptors (GPCRs), membrane bound guanylyl cyclases including the family of natriuretic peptide receptors (NPRs), and the N-terminal leucine/isoleucine/valine- binding protein (LIVBP)-like domains of the ionotropic glutamate receptors (iGluRs). In LacI-like transcriptional regulator and the bacterial periplasmic binding proteins the ligands are monosaccharides including lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars, with a few exceptions. Periplasmic sugar binding proteins are one of the components of ABC transporters and are involved in the active transport of water-soluble ligands. The LacI family of proteins con
Probab=21.93 E-value=1.7e+02 Score=24.26 Aligned_cols=59 Identities=12% Similarity=0.215 Sum_probs=40.7
Q ss_pred EEEEeCcCc-HHHHHHHHHhhhhcCCCeEEEecccCCCCCCccccceeccCCCeEEEecCCCC
Q 022952 18 LLVVDAMTG-QEAAALVTTFNIEIGITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGERM 79 (289)
Q Consensus 18 ~LVldAttg-qda~~~a~~F~~~v~i~gvIlTKlDetargG~aLS~~~~t~~PI~FIgtGQkV 79 (289)
+.+++.... .+....++.+.. -+++++|++=.+.+... ++......++|+.+++.....
T Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~-~~~d~ii~~~~~~~~~~--~~~~~~~~~ip~v~~~~~~~~ 94 (269)
T cd01391 35 VILADSQSDPERALEALRDLIQ-QGVDGIIGPPSSSSALA--VVELAAAAGIPVVSLDATAPD 94 (269)
T ss_pred EEEecCCCCHHHHHHHHHHHHH-cCCCEEEecCCCHHHHH--HHHHHHHcCCcEEEecCCCCc
Confidence 334444433 366677777776 58999999866654432 677778899999999877554
No 210
>PRK01077 cobyrinic acid a,c-diamide synthase; Validated
Probab=21.74 E-value=83 Score=31.54 Aligned_cols=56 Identities=36% Similarity=0.475 Sum_probs=33.3
Q ss_pred CeEEEEEeCcCcH-HHHHHH---HHhhhhcCCCeEEEecccCCCCCCccccceeccCCCe
Q 022952 15 TEVLLVVDAMTGQ-EAAALV---TTFNIEIGITGAILTKLDGDSRGGAALSVKEVSGKPI 70 (289)
Q Consensus 15 ~ev~LVldAttgq-da~~~a---~~F~~~v~i~gvIlTKlDetargG~aLS~~~~t~~PI 70 (289)
..++||+|+.... ....++ ..|...+.+-|+|++|+......--.-.....++.|+
T Consensus 115 ~pviLV~~~~~~~~~~a~l~~~~~~~~~~i~i~GvI~N~v~~~~~~~~l~~~l~~~gipv 174 (451)
T PRK01077 115 APVVLVVDASGMAQSAAALVLGFATFDPDVRIAGVILNRVGSERHYQLLREALERCGIPV 174 (451)
T ss_pred CCEEEEECCchHHHHHHHHHHHHHHhCCCCCEEEEEEECCCChhHHHHHHHHHHhcCCCE
Confidence 5799999987633 232333 4455457899999999965321111122233367775
No 211
>PF07217 Het-C: Heterokaryon incompatibility protein Het-C; InterPro: IPR010816 In filamentous fungi, het loci (for heterokaryon incompatibility) are believed to regulate self/nonself-recognition during vegetative growth. As filamentous fungi grow, hyphal fusion occurs within an individual colony to form a network. Hyphal fusion can occur also between different individuals to form a heterokaryon, in which genetically distinct nuclei occupy a common cytoplasm. However, heterokaryotic cells are viable only if the individuals involved have identical alleles at all het loci [].
Probab=21.71 E-value=2e+02 Score=30.73 Aligned_cols=13 Identities=23% Similarity=0.557 Sum_probs=10.7
Q ss_pred CCCCchhhHHHHh
Q 022952 237 GSLPALSNLEDAL 249 (289)
Q Consensus 237 ~~~~~~~~~~~~~ 249 (289)
-++|||+.|.+++
T Consensus 397 ekIPgL~~l~e~i 409 (606)
T PF07217_consen 397 EKIPGLESLIEKI 409 (606)
T ss_pred hcCCCcHHHHHHH
Confidence 4799999988776
No 212
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=21.46 E-value=1.7e+02 Score=25.83 Aligned_cols=67 Identities=16% Similarity=0.219 Sum_probs=36.5
Q ss_pred CCCeEEEEEeCcCc-------H--HHHHHHHHhhhhcCC--CeEEEecccCCCC--CCc----ccc----ceec-----c
Q 022952 13 NPTEVLLVVDAMTG-------Q--EAAALVTTFNIEIGI--TGAILTKLDGDSR--GGA----ALS----VKEV-----S 66 (289)
Q Consensus 13 ~P~ev~LVldAttg-------q--da~~~a~~F~~~v~i--~gvIlTKlDetar--gG~----aLS----~~~~-----t 66 (289)
..+-++||+||+.+ . ......... ..+++ ==++++|+|.... -.. ++. .... .
T Consensus 100 ~~d~~i~VvDa~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~iiivvNK~Dl~~~~~~~~~~~~i~~~l~~~l~~~~~~~~ 178 (219)
T cd01883 100 QADVAVLVVDARKGEFEAGFEKGGQTREHALLA-RTLGVKQLIVAVNKMDDVTVNWSEERYDEIKKELSPFLKKVGYNPK 178 (219)
T ss_pred hCCEEEEEEECCCCccccccccccchHHHHHHH-HHcCCCeEEEEEEccccccccccHHHHHHHHHHHHHHHHHcCCCcC
Confidence 46789999999874 1 222222211 22342 2358999998621 111 111 0111 2
Q ss_pred CCCeEEEe--cCCCCC
Q 022952 67 GKPIKLVG--RGERME 80 (289)
Q Consensus 67 ~~PI~FIg--tGQkVd 80 (289)
+.||.+++ +|++++
T Consensus 179 ~~~ii~iSA~tg~gi~ 194 (219)
T cd01883 179 DVPFIPISGLTGDNLI 194 (219)
T ss_pred CceEEEeecCcCCCCC
Confidence 46788887 588885
No 213
>PF02375 JmjN: jmjN domain; InterPro: IPR003349 Jumonji protein is required for neural tube formation in mice [].There is evidence of domain swapping within the jumonji family of transcription factors []. This domain is often associated with JmjC (see IPR003347 from INTERPRO).; PDB: 2XML_A 2W2I_C 3DXT_A 3DXU_A 2OX0_B 2OQ6_B 2WWJ_A 2Q8D_A 3PDQ_A 2YBK_A ....
Probab=21.46 E-value=36 Score=22.68 Aligned_cols=25 Identities=20% Similarity=0.408 Sum_probs=17.5
Q ss_pred hHHHHHHHHHHHhcCchHHHHhcCC
Q 022952 130 FNDFLKQTRTVARMGSMSRVIGMIP 154 (289)
Q Consensus 130 l~Df~~Q~~~i~kmG~l~~i~~miP 154 (289)
|.|++..+++|...|.-..|.+.+|
T Consensus 10 F~dp~~yi~~i~~~g~~~Gi~KIvP 34 (34)
T PF02375_consen 10 FKDPIKYISSIEPEGEKYGICKIVP 34 (34)
T ss_dssp HS-HHHHHHHHHHTTGGGSEEEE--
T ss_pred HhCHHHHHHHHHHHHHHCCEEEecC
Confidence 5689999999998888666666555
No 214
>PRK14737 gmk guanylate kinase; Provisional
Probab=21.37 E-value=80 Score=27.79 Aligned_cols=59 Identities=14% Similarity=0.203 Sum_probs=31.4
Q ss_pred CCCCChhHHHHHhhCCCch--hHHHHHHHHhccHHHHHHHHHHHHhCCcChHHHHHHHHHHH
Q 022952 82 LEPFYPDRMAGRILGMGDV--LSFVEKAQEVMQQEDAEEMQKKIMSANFDFNDFLKQTRTVA 141 (289)
Q Consensus 82 Le~f~p~~la~rlLG~gDi--~sLvEk~~~~~~~~~~~~~~~k~~~g~F~l~Df~~Q~~~i~ 141 (289)
|.+.+++.+..||...|+. ..+-+.+..+..+.+-......+..+. ||++.+.|++.+.
T Consensus 122 i~pps~e~l~~RL~~R~~~s~e~i~~Rl~~~~~e~~~~~~~D~vI~N~-dle~a~~ql~~ii 182 (186)
T PRK14737 122 IEPPSEEEWEERLIHRGTDSEESIEKRIENGIIELDEANEFDYKIIND-DLEDAIADLEAII 182 (186)
T ss_pred EECCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhccCCEEEECc-CHHHHHHHHHHHH
Confidence 4567888899999887642 233333333322221112222233344 6777777776654
No 215
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=21.34 E-value=2.1e+02 Score=23.17 Aligned_cols=41 Identities=20% Similarity=0.190 Sum_probs=23.5
Q ss_pred CCCeEEEEEeCcCcHH---HHHHHHH-hhhh---cCCCeEEEecccCC
Q 022952 13 NPTEVLLVVDAMTGQE---AAALVTT-FNIE---IGITGAILTKLDGD 53 (289)
Q Consensus 13 ~P~ev~LVldAttgqd---a~~~a~~-F~~~---v~i~gvIlTKlDet 53 (289)
..+-+++|+|++.... +.+.... ++.. =.+--+|+||+|..
T Consensus 66 ~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~ 113 (158)
T cd04151 66 NTDAIIYVVDSTDRDRLGTAKEELHAMLEEEELKGAVLLVFANKQDMP 113 (158)
T ss_pred CCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCcEEEEEeCCCCC
Confidence 4677999999987542 2221111 1110 12457889999964
No 216
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=21.19 E-value=1.7e+02 Score=24.53 Aligned_cols=38 Identities=26% Similarity=0.302 Sum_probs=18.7
Q ss_pred CeEEEEEeCcCcH-HHH-HHHHHhhhhcCCC-eEEEecccCC
Q 022952 15 TEVLLVVDAMTGQ-EAA-ALVTTFNIEIGIT-GAILTKLDGD 53 (289)
Q Consensus 15 ~ev~LVldAttgq-da~-~~a~~F~~~v~i~-gvIlTKlDet 53 (289)
+-+++|+|++.+. +.. ++.+.+.. .++. -+++||+|..
T Consensus 108 ~~~~~v~d~~~~~~~~~~~i~~~l~~-~~~~~iiv~nK~Dl~ 148 (196)
T PRK00454 108 KGVVLLIDSRHPLKELDLQMIEWLKE-YGIPVLIVLTKADKL 148 (196)
T ss_pred eEEEEEEecCCCCCHHHHHHHHHHHH-cCCcEEEEEECcccC
Confidence 3466677766553 221 22333322 3333 5667777763
No 217
>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional
Probab=21.04 E-value=1.8e+02 Score=29.50 Aligned_cols=70 Identities=14% Similarity=0.138 Sum_probs=39.9
Q ss_pred hCCCeEEEEEeCcCcH-----HHHHHHHHhhhhcCCCeEEEecccCCCCCCcccc-c-------ee----ccCCCeEEEe
Q 022952 12 LNPTEVLLVVDAMTGQ-----EAAALVTTFNIEIGITGAILTKLDGDSRGGAALS-V-------KE----VSGKPIKLVG 74 (289)
Q Consensus 12 ~~P~ev~LVldAttgq-----da~~~a~~F~~~v~i~gvIlTKlDetargG~aLS-~-------~~----~t~~PI~FIg 74 (289)
...|-++||+||..|- +...++.... ++.--+++||+|....--..+. + .. ....||.+|+
T Consensus 129 ~~aD~allVVDa~~G~~~qt~~~~~l~~~lg--~~~iIvvvNKiD~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~iipvS 206 (474)
T PRK05124 129 STCDLAILLIDARKGVLDQTRRHSFIATLLG--IKHLVVAVNKMDLVDYSEEVFERIREDYLTFAEQLPGNLDIRFVPLS 206 (474)
T ss_pred hhCCEEEEEEECCCCccccchHHHHHHHHhC--CCceEEEEEeeccccchhHHHHHHHHHHHHHHHhcCCCCCceEEEEE
Confidence 4568899999998874 2223344333 2223468999997531111111 1 11 1246777777
Q ss_pred --cCCCCCCCC
Q 022952 75 --RGERMEDLE 83 (289)
Q Consensus 75 --tGQkVdDLe 83 (289)
+|++++.+.
T Consensus 207 A~~g~ni~~~~ 217 (474)
T PRK05124 207 ALEGDNVVSQS 217 (474)
T ss_pred eecCCCccccc
Confidence 788886543
No 218
>PF08020 DUF1706: Protein of unknown function (DUF1706) ; InterPro: IPR012550 This family contains many hypothetical proteins from bacteria and yeast.
Probab=20.99 E-value=3.4e+02 Score=24.00 Aligned_cols=51 Identities=12% Similarity=0.245 Sum_probs=39.1
Q ss_pred hhhHHhHHHHHHHHHHHhCCCHHhhcCccccCCCchhhHHhhccCCCCHHHHHHHHHHHHHH
Q 022952 162 AQVREAEKSLKIMEAMIEAMTPEEREKPELLAESPVRRKRVAQDSGKTEQQVSQLVAQLFQM 223 (289)
Q Consensus 162 ~~~~~~e~~~k~~~~Ii~SMT~~Er~nP~li~~~~SR~~RIA~GSG~~~~eVn~Llk~f~~m 223 (289)
+.+...++.+.++...|+++++++++.|-.+. |--.++.||--=+-.+.++
T Consensus 9 eLl~ai~~~~~kL~~~~~~ipee~~~~~~~~~-----------~~d~~~~DvLayl~gW~~L 59 (166)
T PF08020_consen 9 ELLEAIEKNYEKLISEIDSIPEEQKDTPFDFG-----------GRDRNPRDVLAYLYGWHEL 59 (166)
T ss_pred HHHHHHHHHHHHHHHHHHhCCHHHhcCccccc-----------cccCCHHHHHHHHHHHHHH
Confidence 34566788999999999999999999998762 6677888886555455444
No 219
>PF09592 DUF2031: Protein of unknown function (DUF2031); InterPro: IPR006484 The sequences in this group represent a paralogous family of Plasmodium yoelii genes preferentially located in the subtelomeric regions of the chromosomes. There are no obvious homologs to these genes in any other organism.
Probab=20.93 E-value=75 Score=29.84 Aligned_cols=75 Identities=19% Similarity=0.414 Sum_probs=44.7
Q ss_pred hCCcChHHHHHHHHHHHhcCchHHHHhcCCCCCCCCchhhHHhHHHHHHHHHHHhCCCHHhhcC---ccccCCCchhhHH
Q 022952 125 SANFDFNDFLKQTRTVARMGSMSRVIGMIPGMGKITPAQVREAEKSLKIMEAMIEAMTPEEREK---PELLAESPVRRKR 201 (289)
Q Consensus 125 ~g~F~l~Df~~Q~~~i~kmG~l~~i~~miPG~~~~~~~~~~~~e~~~k~~~~Ii~SMT~~Er~n---P~li~~~~SR~~R 201 (289)
..+|||+|||+-.=.+. -.++. -.++++.+..+..+|+|=.++-.+| |+|=+ -.++-+
T Consensus 51 dn~fdlN~Fy~Stlsl~------------nq~nd-----~~~ddeei~~lrn~i~shikkhkenntl~~L~n-vd~ktk- 111 (228)
T PF09592_consen 51 DNQFDLNDFYESTLSLA------------NQFND-----YNDDDEEIIYLRNIIDSHIKKHKENNTLPDLNN-VDKKTK- 111 (228)
T ss_pred CccccHHHHHHHHHHHH------------hhccc-----ccCCcHHHHHHHhhhHHHhhhhhcccccccccc-chHHHH-
Confidence 45899999997433322 12221 1235678999999999988776665 45322 123433
Q ss_pred hhccCCCCHHHHHHHHHHHHHHHHHH
Q 022952 202 VAQDSGKTEQQVSQLVAQLFQMRVRM 227 (289)
Q Consensus 202 IA~GSG~~~~eVn~Llk~f~~m~kmm 227 (289)
.=+++|-+..+..++-.
T Consensus 112 ---------klI~el~keLeevkKel 128 (228)
T PF09592_consen 112 ---------KLINELRKELEEVKKEL 128 (228)
T ss_pred ---------HHHHHHHHHHHHHHHHh
Confidence 33566666666665443
No 220
>PF04695 Pex14_N: Peroxisomal membrane anchor protein (Pex14p) conserved region; InterPro: IPR006785 This conserved region defines a group of peroxisomal membrane anchor proteins which bind the PTS1 (peroxisomal targeting signal) receptor and are required for the import of PTS1-containing proteins into peroxisomes. Loss of functional Pex14p results in defects in both the PTS1 and PTS2-dependent import pathways. Deletion analysis of this conserved region implicates it in selective peroxisome degradation. In the majority of members this region is situated at the N terminus of the protein [, ].; GO: 0005777 peroxisome, 0016020 membrane; PDB: 2W85_A 2W84_A 3FF5_B.
Probab=20.66 E-value=1.1e+02 Score=25.97 Aligned_cols=38 Identities=11% Similarity=0.192 Sum_probs=26.3
Q ss_pred hcCccccCCCchhhHHhhccCCCCHHHHHHHHHHHHHH
Q 022952 186 REKPELLAESPVRRKRVAQDSGKTEQQVSQLVAQLFQM 223 (289)
Q Consensus 186 r~nP~li~~~~SR~~RIA~GSG~~~~eVn~Llk~f~~m 223 (289)
++||++-+....+|..--+.-|.|.+||.++|+.-..-
T Consensus 13 L~~p~V~~sp~~~k~~FL~sKGLt~~EI~~al~~a~~~ 50 (136)
T PF04695_consen 13 LQDPKVRNSPLEKKIAFLESKGLTEEEIDEALGRAGSP 50 (136)
T ss_dssp HCTTTCCCS-HHHHHHHHHHCT--HHHHHHHHHHHT--
T ss_pred hCCcccccCCHHHHHHHHHcCCCCHHHHHHHHHhcCCc
Confidence 46999876434566666699999999999999987655
No 221
>PRK13585 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=20.66 E-value=3.3e+02 Score=24.30 Aligned_cols=68 Identities=18% Similarity=0.367 Sum_probs=43.2
Q ss_pred HHHHHHHhCCCeEEEEEeCc------------CcHHHHHHHHHhhhhcCCCeEEEecc--cCCCCCCccc----cceecc
Q 022952 5 LKDVKRVLNPTEVLLVVDAM------------TGQEAAALVTTFNIEIGITGAILTKL--DGDSRGGAAL----SVKEVS 66 (289)
Q Consensus 5 Lk~i~~~~~P~ev~LVldAt------------tgqda~~~a~~F~~~v~i~gvIlTKl--DetargG~aL----S~~~~t 66 (289)
+.++.+...+..+++.+|+. ++.+..+.++.+.. .+++.+++|=+ |++.. |.-+ .++..+
T Consensus 115 ~~~i~~~~g~~~i~~sid~~~~~v~~~g~~~~~~~~~~~~~~~~~~-~G~~~i~~~~~~~~g~~~-g~~~~~i~~i~~~~ 192 (241)
T PRK13585 115 VRELSEEFGSERVMVSLDAKDGEVVIKGWTEKTGYTPVEAAKRFEE-LGAGSILFTNVDVEGLLE-GVNTEPVKELVDSV 192 (241)
T ss_pred HHHHHHHhCCCcEEEEEEeeCCEEEECCCcccCCCCHHHHHHHHHH-cCCCEEEEEeecCCCCcC-CCCHHHHHHHHHhC
Confidence 45555555667788888853 23356778888876 89999999766 44432 2222 233345
Q ss_pred CCCeEEEe
Q 022952 67 GKPIKLVG 74 (289)
Q Consensus 67 ~~PI~FIg 74 (289)
..||...|
T Consensus 193 ~iPvia~G 200 (241)
T PRK13585 193 DIPVIASG 200 (241)
T ss_pred CCCEEEeC
Confidence 67877666
No 222
>cd03108 AdSS Adenylosuccinate synthetase (AdSS) catalyzes the first step in the de novo biosynthesis of AMP. IMP and L-aspartate are conjugated in a two-step reaction accompanied by the hydrolysis of GTP to GDP in the presence of Mg2+. In the first step, the r-phosphate group of GTP is transferred to the 6-oxygen atom of IMP. An aspartate then displaces this 6-phosphate group to form the product adenylosuccinate. Because of its critical role in purine biosynthesis, AdSS is a target of antibiotics, herbicides and antitumor drugs.
Probab=20.47 E-value=69 Score=31.99 Aligned_cols=14 Identities=50% Similarity=0.501 Sum_probs=12.0
Q ss_pred CCCeEEEecccCCC
Q 022952 41 GITGAILTKLDGDS 54 (289)
Q Consensus 41 ~i~gvIlTKlDeta 54 (289)
+++++.+||+|--+
T Consensus 270 g~t~lalTkLDvL~ 283 (363)
T cd03108 270 GVTELALTKLDVLD 283 (363)
T ss_pred CCCeEEEeceeecC
Confidence 79999999999643
No 223
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=20.25 E-value=1.6e+02 Score=26.97 Aligned_cols=41 Identities=20% Similarity=0.130 Sum_probs=20.8
Q ss_pred CCCeEEEEEeCcCcH-HHHHHHHHhhhhcCCCeEEEecccCC
Q 022952 13 NPTEVLLVVDAMTGQ-EAAALVTTFNIEIGITGAILTKLDGD 53 (289)
Q Consensus 13 ~P~ev~LVldAttgq-da~~~a~~F~~~v~i~gvIlTKlDet 53 (289)
..|-+++|+|++... +...+.......-.+--+|+||+|..
T Consensus 79 ~aDvvl~VvD~~~~~~~~~~i~~~l~~~~~p~ilV~NK~Dl~ 120 (270)
T TIGR00436 79 GVDLILFVVDSDQWNGDGEFVLTKLQNLKRPVVLTRNKLDNK 120 (270)
T ss_pred hCCEEEEEEECCCCCchHHHHHHHHHhcCCCEEEEEECeeCC
Confidence 456788888887654 21112222221111235667777763
Done!