Query 022952
Match_columns 289
No_of_seqs 206 out of 1652
Neff 4.8
Searched_HMMs 29240
Date Mon Mar 25 13:54:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022952.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/022952hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3dm5_A SRP54, signal recogniti 100.0 1.3E-71 4.4E-76 545.7 19.4 235 1-242 200-437 (443)
2 3kl4_A SRP54, signal recogniti 100.0 2.8E-70 9.5E-75 534.5 11.7 228 1-230 199-432 (433)
3 2ffh_A Protein (FFH); SRP54, s 100.0 1.8E-62 6.2E-67 478.2 16.7 221 1-232 198-418 (425)
4 2xxa_A Signal recognition part 100.0 5.7E-58 2E-62 446.4 20.2 227 2-231 202-431 (433)
5 2v3c_C SRP54, signal recogniti 100.0 1.7E-55 5.9E-60 428.8 4.9 226 2-230 199-426 (432)
6 2j37_W Signal recognition part 100.0 7.1E-56 2.4E-60 439.8 1.5 230 2-232 202-436 (504)
7 2jqe_A SRP54, signal recogniti 100.0 9.8E-43 3.4E-47 288.3 2.7 115 120-240 2-118 (119)
8 1mfq_C SRP54, signal recogniti 100.0 3.7E-41 1.3E-45 282.1 7.0 109 124-232 11-124 (129)
9 1hq1_A Signal recognition part 100.0 2.7E-41 9.3E-46 274.3 5.4 103 127-231 1-104 (105)
10 1qb2_A SRP54, human signal rec 100.0 1.1E-40 3.6E-45 272.4 8.0 104 127-230 1-109 (109)
11 1dul_A Signal recognition part 99.9 8.9E-28 3E-32 181.6 6.4 66 163-230 4-69 (69)
12 1vma_A Cell division protein F 99.9 3.4E-22 1.2E-26 186.6 7.4 97 1-97 204-306 (306)
13 3e70_C DPA, signal recognition 99.8 8.3E-22 2.8E-26 185.6 7.6 98 1-98 229-326 (328)
14 2yhs_A FTSY, cell division pro 99.8 1.3E-21 4.3E-26 194.6 7.0 99 1-99 393-497 (503)
15 1ls1_A Signal recognition part 99.8 5.2E-21 1.8E-25 176.7 7.7 97 2-98 199-295 (295)
16 1zu4_A FTSY; GTPase, signal re 99.8 1.4E-20 4.7E-25 176.4 7.4 99 1-100 209-313 (320)
17 1rj9_A FTSY, signal recognitio 99.8 2.4E-20 8.3E-25 173.6 8.1 95 2-96 203-303 (304)
18 2og2_A Putative signal recogni 99.8 3.3E-20 1.1E-24 177.1 5.8 95 2-96 259-359 (359)
19 1j8m_F SRP54, signal recogniti 99.8 5.8E-20 2E-24 170.4 6.4 96 2-97 201-296 (297)
20 3b9q_A Chloroplast SRP recepto 99.8 2E-19 6.7E-24 167.2 6.5 95 2-96 202-302 (302)
21 2px0_A Flagellar biosynthesis 99.7 8.3E-18 2.9E-22 155.6 4.9 94 2-96 201-296 (296)
22 2e87_A Hypothetical protein PH 90.9 0.025 8.6E-07 52.4 -1.6 70 13-82 246-326 (357)
23 3a1s_A Iron(II) transport prot 85.7 0.37 1.3E-05 42.7 2.4 70 12-81 82-156 (258)
24 3iby_A Ferrous iron transport 79.1 0.66 2.3E-05 41.1 1.5 70 12-81 82-156 (256)
25 3k53_A Ferrous iron transport 73.4 1.7 5.7E-05 38.2 2.5 68 12-79 80-153 (271)
26 2dyk_A GTP-binding protein; GT 72.9 3.6 0.00012 31.6 4.1 43 13-55 79-123 (161)
27 2wjg_A FEOB, ferrous iron tran 72.9 0.55 1.9E-05 37.7 -0.7 63 12-74 84-149 (188)
28 3b1v_A Ferrous iron uptake tra 66.2 1.8 6.2E-05 38.7 1.1 68 13-81 80-153 (272)
29 2bcg_Y Protein YP2, GTP-bindin 58.8 6 0.00021 32.1 2.9 62 13-74 80-151 (206)
30 3p32_A Probable GTPase RV1496/ 58.6 2.2 7.7E-05 39.3 0.3 68 13-82 192-274 (355)
31 3i8s_A Ferrous iron transport 58.0 6.7 0.00023 34.6 3.3 63 12-74 84-149 (274)
32 3cph_A RAS-related protein SEC 57.7 9.7 0.00033 30.8 4.0 41 13-53 92-138 (213)
33 1t9h_A YLOQ, probable GTPase E 57.1 3.1 0.00011 38.4 1.0 77 12-89 85-174 (307)
34 3iwf_A Transcription regulator 56.9 7.6 0.00026 30.4 3.1 55 171-227 5-71 (107)
35 2gj8_A MNME, tRNA modification 56.4 4.1 0.00014 32.7 1.5 43 11-53 81-128 (172)
36 4djt_A GTP-binding nuclear pro 54.1 15 0.00052 30.0 4.7 68 13-80 84-163 (218)
37 3t34_A Dynamin-related protein 50.7 14 0.00048 33.6 4.3 51 12-62 171-225 (360)
38 3zvr_A Dynamin-1; hydrolase, D 50.0 8.6 0.0003 40.1 3.0 70 13-82 187-268 (772)
39 4dcu_A GTP-binding protein ENG 49.8 15 0.00051 34.8 4.5 42 12-54 276-320 (456)
40 2lkc_A Translation initiation 49.1 27 0.00091 27.1 5.2 41 14-54 79-121 (178)
41 3kkq_A RAS-related protein M-R 48.9 10 0.00035 29.9 2.7 62 13-74 89-161 (183)
42 3dpu_A RAB family protein; roc 48.0 16 0.00056 35.3 4.5 70 13-83 121-199 (535)
43 3qq5_A Small GTP-binding prote 47.6 21 0.00072 34.2 5.2 70 13-82 113-186 (423)
44 2o3f_A Putative HTH-type trans 46.9 11 0.00037 29.5 2.5 46 172-219 10-62 (111)
45 2yv5_A YJEQ protein; hydrolase 46.5 2.5 8.6E-05 38.2 -1.5 94 13-108 79-186 (302)
46 2wji_A Ferrous iron transport 46.3 38 0.0013 26.4 5.8 42 12-53 80-121 (165)
47 2wsm_A Hydrogenase expression/ 44.6 20 0.0007 29.3 4.0 38 13-53 129-167 (221)
48 3of5_A Dethiobiotin synthetase 41.5 33 0.0011 29.6 5.0 57 15-71 141-202 (228)
49 2ged_A SR-beta, signal recogni 41.4 14 0.00049 29.3 2.5 12 14-25 119-130 (193)
50 1jwy_B Dynamin A GTPase domain 40.6 27 0.00091 30.5 4.3 49 13-61 167-219 (315)
51 1wjk_A C330018D20RIK protein; 40.2 19 0.00065 26.8 2.9 78 14-95 15-92 (100)
52 2qzs_A Glycogen synthase; glyc 39.4 1.1E+02 0.0039 27.8 8.6 97 43-141 368-473 (485)
53 1svi_A GTP-binding protein YSX 39.4 31 0.0011 27.2 4.3 40 15-54 107-148 (195)
54 3tw8_B RAS-related protein RAB 39.1 44 0.0015 25.7 5.0 41 13-53 81-126 (181)
55 4dhe_A Probable GTP-binding pr 38.5 35 0.0012 27.7 4.5 40 14-53 116-157 (223)
56 3th5_A RAS-related C3 botulinu 42.5 7.5 0.00026 31.6 0.0 42 13-54 101-148 (204)
57 3pqc_A Probable GTP-binding pr 35.6 40 0.0014 26.4 4.3 40 14-53 105-146 (195)
58 3lxx_A GTPase IMAP family memb 35.6 48 0.0016 27.8 5.0 40 13-52 112-157 (239)
59 1upt_A ARL1, ADP-ribosylation 35.6 47 0.0016 25.3 4.6 42 13-54 74-122 (171)
60 1zd9_A ADP-ribosylation factor 35.5 44 0.0015 26.6 4.5 42 13-54 90-138 (188)
61 2aka_B Dynamin-1; fusion prote 34.9 49 0.0017 28.4 5.1 43 13-55 161-207 (299)
62 2xtp_A GTPase IMAP family memb 34.6 50 0.0017 28.0 5.0 42 12-53 104-152 (260)
63 2c78_A Elongation factor TU-A; 33.3 57 0.002 30.2 5.6 41 12-53 97-141 (405)
64 3j2k_7 ERF3, eukaryotic polype 33.3 46 0.0016 31.5 5.0 40 13-53 118-168 (439)
65 2jjm_A Glycosyl transferase, g 33.1 2.5E+02 0.0085 24.6 10.9 94 42-141 285-382 (394)
66 1p9b_A Adenylosuccinate synthe 32.9 26 0.00087 34.5 3.1 21 65-85 416-436 (442)
67 1d2e_A Elongation factor TU (E 32.9 47 0.0016 30.8 4.9 40 13-53 89-132 (397)
68 2h57_A ADP-ribosylation factor 32.9 42 0.0014 26.6 4.0 42 13-54 90-140 (190)
69 1rzu_A Glycogen synthase 1; gl 32.8 2.1E+02 0.0071 26.0 9.2 97 43-141 367-472 (485)
70 1ksh_A ARF-like protein 2; sma 32.7 52 0.0018 25.7 4.5 42 13-54 85-133 (186)
71 1ek0_A Protein (GTP-binding pr 32.6 76 0.0026 23.9 5.3 42 13-54 75-122 (170)
72 3cio_A ETK, tyrosine-protein k 32.3 60 0.0021 29.0 5.4 43 14-56 237-282 (299)
73 3n53_A Response regulator rece 31.9 1.3E+02 0.0044 22.0 6.5 96 9-111 20-120 (140)
74 2hxs_A RAB-26, RAS-related pro 31.5 53 0.0018 25.3 4.3 41 13-53 79-128 (178)
75 3p26_A Elongation factor 1 alp 31.5 72 0.0025 30.4 6.1 42 12-54 133-185 (483)
76 4bas_A ADP-ribosylation factor 31.5 69 0.0024 25.2 5.1 15 13-27 86-100 (199)
77 1r8s_A ADP-ribosylation factor 30.9 73 0.0025 24.0 5.0 42 13-54 67-115 (164)
78 1wb1_A Translation elongation 30.7 63 0.0022 31.0 5.6 39 12-53 95-138 (482)
79 1g3q_A MIND ATPase, cell divis 30.6 51 0.0017 27.2 4.3 58 13-70 133-193 (237)
80 2h17_A ADP-ribosylation factor 30.4 62 0.0021 25.4 4.6 42 13-54 88-136 (181)
81 3iev_A GTP-binding protein ERA 30.2 62 0.0021 28.8 5.1 41 13-53 92-135 (308)
82 3qfa_C Thioredoxin; protein-pr 30.2 1E+02 0.0035 22.6 5.6 88 3-93 20-111 (116)
83 2y8e_A RAB-protein 6, GH09086P 30.0 75 0.0026 24.2 5.0 41 13-53 86-132 (179)
84 1x3s_A RAS-related protein RAB 29.5 79 0.0027 24.6 5.1 40 13-52 87-133 (195)
85 3jx9_A Putative phosphoheptose 29.0 1.3E+02 0.0046 25.2 6.7 79 11-95 74-154 (170)
86 3fgn_A Dethiobiotin synthetase 28.9 63 0.0022 28.6 4.8 56 15-71 158-218 (251)
87 3la6_A Tyrosine-protein kinase 28.7 77 0.0026 28.2 5.4 42 14-55 225-269 (286)
88 2b6h_A ADP-ribosylation factor 28.7 77 0.0026 25.4 5.0 42 13-54 96-144 (192)
89 3ff5_A PEX14P, peroxisomal bio 28.5 46 0.0016 23.5 3.0 34 186-219 20-53 (54)
90 1z08_A RAS-related protein RAB 28.4 80 0.0027 23.9 4.9 41 13-53 78-124 (170)
91 2x77_A ADP-ribosylation factor 28.4 74 0.0025 25.0 4.7 42 13-54 89-137 (189)
92 1f60_A Elongation factor EEF1A 28.2 54 0.0019 31.2 4.5 41 12-53 107-158 (458)
93 2x2e_A Dynamin-1; nitration, h 27.8 1.1E+02 0.0038 27.6 6.4 44 13-56 166-213 (353)
94 1ky3_A GTP-binding protein YPT 27.7 78 0.0027 24.2 4.7 40 13-52 81-130 (182)
95 1z0f_A RAB14, member RAS oncog 27.7 94 0.0032 23.7 5.1 41 13-53 87-133 (179)
96 2w84_A Peroxisomal membrane pr 27.5 50 0.0017 24.5 3.2 35 186-220 25-59 (70)
97 3clv_A RAB5 protein, putative; 27.4 89 0.003 24.2 5.0 40 13-52 116-159 (208)
98 1zun_B Sulfate adenylate trans 27.4 90 0.0031 29.2 5.9 42 12-54 126-171 (434)
99 1kk1_A EIF2gamma; initiation o 27.3 73 0.0025 29.5 5.2 40 12-52 105-149 (410)
100 1r5b_A Eukaryotic peptide chai 26.9 66 0.0023 30.7 4.9 41 12-53 143-194 (467)
101 1byi_A Dethiobiotin synthase; 26.8 91 0.0031 25.5 5.2 56 15-70 139-199 (224)
102 1moz_A ARL1, ADP-ribosylation 26.7 70 0.0024 24.7 4.3 42 13-54 85-133 (183)
103 2efe_B Small GTP-binding prote 26.5 1.1E+02 0.0037 23.5 5.4 41 13-53 84-130 (181)
104 1jny_A EF-1-alpha, elongation 26.2 93 0.0032 29.2 5.7 41 13-54 107-158 (435)
105 2e7p_A Glutaredoxin; thioredox 26.1 26 0.00089 25.7 1.5 67 10-80 15-85 (116)
106 1r2q_A RAS-related protein RAB 25.9 1.2E+02 0.004 22.8 5.3 41 13-53 78-124 (170)
107 1z0j_A RAB-22, RAS-related pro 25.9 1.1E+02 0.0038 23.0 5.3 41 13-53 78-124 (170)
108 2yc2_C IFT27, small RAB-relate 25.9 91 0.0031 24.6 4.9 42 13-54 96-146 (208)
109 3bc1_A RAS-related protein RAB 25.8 89 0.0031 24.1 4.7 41 13-53 93-140 (195)
110 2fg5_A RAB-22B, RAS-related pr 25.5 1.1E+02 0.0039 24.1 5.5 41 13-53 95-141 (192)
111 2a9k_A RAS-related protein RAL 25.5 53 0.0018 25.3 3.3 40 13-52 89-135 (187)
112 1zj6_A ADP-ribosylation factor 25.2 87 0.003 24.6 4.6 41 13-53 83-130 (187)
113 1kao_A RAP2A; GTP-binding prot 24.9 58 0.002 24.4 3.4 40 13-52 74-120 (167)
114 1s0u_A EIF-2-gamma, translatio 24.7 94 0.0032 28.8 5.4 40 13-53 104-148 (408)
115 1hyq_A MIND, cell division inh 24.7 38 0.0013 28.7 2.5 57 14-70 133-192 (263)
116 2f7s_A C25KG, RAS-related prot 24.6 1.2E+02 0.0041 24.4 5.5 39 13-52 107-153 (217)
117 2rcn_A Probable GTPase ENGC; Y 24.5 10 0.00034 35.8 -1.3 69 13-83 130-210 (358)
118 3sjy_A Translation initiation 24.4 1E+02 0.0036 28.4 5.6 40 12-52 97-141 (403)
119 2d7u_A Adenylosuccinate synthe 24.2 60 0.002 30.8 3.9 41 41-81 276-331 (339)
120 2qu8_A Putative nucleolar GTP- 24.1 94 0.0032 25.6 4.8 42 13-54 108-156 (228)
121 2g6b_A RAS-related protein RAB 23.8 1.1E+02 0.0038 23.4 4.9 42 13-54 83-130 (180)
122 2fu5_C RAS-related protein RAB 23.7 1.4E+02 0.0047 23.0 5.5 41 13-53 80-126 (183)
123 1f0k_A MURG, UDP-N-acetylgluco 23.6 53 0.0018 28.5 3.3 84 56-141 263-354 (364)
124 1k2h_A S100A1, S-100 protein, 23.6 1.3E+02 0.0043 20.8 4.8 32 111-142 49-83 (93)
125 2oil_A CATX-8, RAS-related pro 23.4 1.1E+02 0.0038 24.0 4.9 41 13-53 97-143 (193)
126 2il1_A RAB12; G-protein, GDP, 23.4 1E+02 0.0036 24.4 4.8 41 13-53 98-144 (192)
127 3m9j_A Thioredoxin; oxidoreduc 23.3 1.2E+02 0.0041 21.1 4.7 88 3-93 9-100 (105)
128 2hjg_A GTP-binding protein ENG 23.3 1.1E+02 0.0039 28.5 5.7 43 13-55 82-126 (436)
129 1vg8_A RAS-related protein RAB 23.2 1E+02 0.0035 24.4 4.7 41 13-53 80-130 (207)
130 3reg_A RHO-like small GTPase; 23.2 93 0.0032 24.6 4.5 41 13-53 94-140 (194)
131 3vqt_A RF-3, peptide chain rel 22.3 85 0.0029 30.9 4.8 36 14-52 124-164 (548)
132 1z2a_A RAS-related protein RAB 22.3 1.2E+02 0.0042 22.7 4.8 41 13-53 77-122 (168)
133 2rdo_7 EF-G, elongation factor 22.1 4.8E+02 0.016 26.3 10.4 39 13-54 105-148 (704)
134 2p22_C Protein SRN2; endosome, 22.0 41 0.0014 29.2 2.2 31 113-143 141-173 (192)
135 1u8z_A RAS-related protein RAL 21.8 1.4E+02 0.0048 22.2 5.1 40 13-52 75-121 (168)
136 3li6_A Calcium-binding protein 21.7 68 0.0023 20.6 2.8 40 100-139 22-64 (66)
137 2bme_A RAB4A, RAS-related prot 21.6 1.4E+02 0.0047 23.0 5.1 41 13-53 82-128 (186)
138 2hjg_A GTP-binding protein ENG 21.5 1E+02 0.0034 28.9 4.9 43 12-54 256-300 (436)
139 3miz_A Putative transcriptiona 21.4 2.3E+02 0.0078 23.9 6.9 55 17-76 46-101 (301)
140 3qxc_A Dethiobiotin synthetase 21.3 97 0.0033 27.2 4.5 39 15-54 162-203 (242)
141 2a5j_A RAS-related protein RAB 21.2 1.4E+02 0.0048 23.5 5.1 41 13-53 93-139 (191)
142 2qpt_A EH domain-containing pr 21.1 84 0.0029 30.9 4.4 42 13-54 188-232 (550)
143 1wf3_A GTP-binding protein; GT 20.9 1.2E+02 0.004 27.1 5.1 41 13-53 86-130 (301)
144 1fzq_A ADP-ribosylation factor 20.9 1.2E+02 0.0041 23.8 4.7 41 13-53 83-130 (181)
145 3izq_1 HBS1P, elongation facto 20.8 87 0.003 31.2 4.5 42 12-54 267-319 (611)
146 1ka9_F Imidazole glycerol phos 20.7 83 0.0029 26.7 3.9 69 5-74 114-203 (252)
147 1z06_A RAS-related protein RAB 20.7 1.3E+02 0.0045 23.5 4.9 41 13-53 93-140 (189)
148 2gf9_A RAS-related protein RAB 20.3 1.2E+02 0.004 23.8 4.5 41 13-53 94-140 (189)
149 3egc_A Putative ribose operon 20.3 2.6E+02 0.0087 23.4 6.9 56 17-76 40-96 (291)
150 2pu9_C TRX-F, thioredoxin F-ty 20.2 1.2E+02 0.0042 21.6 4.2 76 14-91 24-103 (111)
151 3tkl_A RAS-related protein RAB 20.0 1.6E+02 0.0053 23.0 5.1 41 13-53 88-134 (196)
152 2o52_A RAS-related protein RAB 20.0 1.5E+02 0.005 23.7 5.1 41 13-53 97-143 (200)
No 1
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=100.00 E-value=1.3e-71 Score=545.66 Aligned_cols=235 Identities=34% Similarity=0.637 Sum_probs=204.4
Q ss_pred ChHHHHHHHHHhCCCeEEEEEeCcCcHHHHHHHHHhhhhcCCCeEEEecccCCCCCCccccceeccCCCeEEEecCCCCC
Q 022952 1 MMDELKDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGERME 80 (289)
Q Consensus 1 Lm~ELk~i~~~~~P~ev~LVldAttgqda~~~a~~F~~~v~i~gvIlTKlDetargG~aLS~~~~t~~PI~FIgtGQkVd 80 (289)
+|.||.++..+++|++++||+||++||++.++++.|++.++++|+|+||+|+++++|+++|+++.+++||+|+|+||+|+
T Consensus 200 lm~el~~i~~~~~pd~vlLVvDA~~gq~a~~~a~~f~~~~~i~gVIlTKlD~~~~gG~~ls~~~~~g~PI~fig~Ge~vd 279 (443)
T 3dm5_A 200 LIEEMKQISNVIHPHEVILVIDGTIGQQAYNQALAFKEATPIGSIIVTKLDGSAKGGGALSAVAATGAPIKFIGTGEKID 279 (443)
T ss_dssp HHHHHHHHHHHHCCSEEEEEEEGGGGGGHHHHHHHHHHSCTTEEEEEECCSSCSSHHHHHHHHHTTCCCEEEEECSSSTT
T ss_pred HHHHHHHHHHhhcCceEEEEEeCCCchhHHHHHHHHHhhCCCeEEEEECCCCcccccHHHHHHHHHCCCEEEEEcCCChH
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCChhHHHHHhhCCCchhHHHHHHHHhccHHH--HHHHHHHHHhCCcChHHHHHHHHHHHhcCchHHHHhcCCCCCC
Q 022952 81 DLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQED--AEEMQKKIMSANFDFNDFLKQTRTVARMGSMSRVIGMIPGMGK 158 (289)
Q Consensus 81 DLe~f~p~~la~rlLG~gDi~sLvEk~~~~~~~~~--~~~~~~k~~~g~F~l~Df~~Q~~~i~kmG~l~~i~~miPG~~~ 158 (289)
||++|+|++|+++||||||+++|+||+++.+++++ ++ +++||++|+|||+|||+|+++|+||||+++|++|||||++
T Consensus 280 dL~~f~~~~~~~~llg~gd~~~l~e~~~~~~~~~~~~~~-~~~k~~~~~f~l~d~~~q~~~~~kmg~~~~~~~m~pg~~~ 358 (443)
T 3dm5_A 280 DIEPFDPPRFVSRLLGLGDIQGLLEKFKELEKEVEIKEE-DIERFLRGKFTLKDMYAQLEAMRKMGPLKQILRMIPGLGY 358 (443)
T ss_dssp CEEECCHHHHHHHHTTTTCHHHHHHHHHHHHTTHHHHHH-HHHHHHTTCCCHHHHHHHHHHHHTTCC-------------
T ss_pred HhhhCCHHHHHHHHcCCCcHHHHHHHHHHhhhhhHHHHH-HHHHHhhCCcCHHHHHHHHHHHHhccCHHHHHHHCCCchh
Confidence 99999999999999999999999999999999887 75 9999999999999999999999999999999999999984
Q ss_pred -CCchhhHHhHHHHHHHHHHHhCCCHHhhcCccccCCCchhhHHhhccCCCCHHHHHHHHHHHHHHHHHHHHHhcccCCC
Q 022952 159 -ITPAQVREAEKSLKIMEAMIEAMTPEEREKPELLAESPVRRKRVAQDSGKTEQQVSQLVAQLFQMRVRMKNLMGVMEGG 237 (289)
Q Consensus 159 -~~~~~~~~~e~~~k~~~~Ii~SMT~~Er~nP~li~~~~SR~~RIA~GSG~~~~eVn~Llk~f~~m~kmmk~~~~~~~~~ 237 (289)
+++...+.+++++++|++||+|||++||+||+||+ +||++|||+||||+++|||+||+||++|++|||+|. +|
T Consensus 359 ~~~~~~~~~~~~~~~~~~~ii~smt~~e~~~p~~~~--~sr~~ria~gsg~~~~~v~~ll~~~~~~~~~~~~~~----~~ 432 (443)
T 3dm5_A 359 SLPDDVISIGEERLKKFKVIMDSMTEEELLNPEIIN--YSRIKRIARGSGTSTKDVKELLDQYRQMKKLFKSMN----KR 432 (443)
T ss_dssp ------CCCCHHHHHHHHHHHTTSCHHHHHCGGGCC--HHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHTCC----SC
T ss_pred hcchhhhhhhHHHHHHHHHHHHcCCHHHhcCchhcC--hHHHHHHHccCCCCHHHHHHHHHHHHHHHHHHHHHc----CC
Confidence 55444456789999999999999999999999995 799999999999999999999999999988888764 45
Q ss_pred CCCch
Q 022952 238 SLPAL 242 (289)
Q Consensus 238 ~~~~~ 242 (289)
++++|
T Consensus 433 ~~~~~ 437 (443)
T 3dm5_A 433 QLSRL 437 (443)
T ss_dssp CCC--
T ss_pred CHHHH
Confidence 55543
No 2
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=100.00 E-value=2.8e-70 Score=534.55 Aligned_cols=228 Identities=32% Similarity=0.586 Sum_probs=201.0
Q ss_pred ChHHHHHHHHHhCCCeEEEEEeCcCcHHHHHHHHHhhhhcCCCeEEEecccCCCCCCccccceeccCCCeEEEecCCCCC
Q 022952 1 MMDELKDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGERME 80 (289)
Q Consensus 1 Lm~ELk~i~~~~~P~ev~LVldAttgqda~~~a~~F~~~v~i~gvIlTKlDetargG~aLS~~~~t~~PI~FIgtGQkVd 80 (289)
+|.|+..+..+++|++++||+||++||++.+++++|++.++++|+|+||+|+++++|+++|+++.+++||+|+|+||+|+
T Consensus 199 lm~el~~i~~~~~pd~vlLVlDa~~gq~a~~~a~~f~~~~~~~gVIlTKlD~~a~~G~als~~~~~g~Pi~fig~Ge~v~ 278 (433)
T 3kl4_A 199 LLEEMKEMYDVLKPDDVILVIDASIGQKAYDLASRFHQASPIGSVIITKMDGTAKGGGALSAVVATGATIKFIGTGEKID 278 (433)
T ss_dssp HHHHHHHHHHHHCCSEEEEEEEGGGGGGGHHHHHHHHHHCSSEEEEEECGGGCSCHHHHHHHHHHHTCEEEEEECCSSSS
T ss_pred HHHHHHHHHHhhCCcceEEEEeCccchHHHHHHHHHhcccCCcEEEEecccccccchHHHHHHHHHCCCEEEEECCCChH
Confidence 47899999999999999999999999999999999999899999999999999999999999999999999999999999
Q ss_pred CCCCCChhHHHHHhhCCCchhHHHHHHHHhccHHHHHHHHHHHHhC--CcChHHHHHHHHHHHhcCchHHHHhcCCCCCC
Q 022952 81 DLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQKKIMSA--NFDFNDFLKQTRTVARMGSMSRVIGMIPGMGK 158 (289)
Q Consensus 81 DLe~f~p~~la~rlLG~gDi~sLvEk~~~~~~~~~~~~~~~k~~~g--~F~l~Df~~Q~~~i~kmG~l~~i~~miPG~~~ 158 (289)
||++|+|++|+++||||||+.+|+||+++.+++++|+++++|+++| +|||+||++|+++|+||||+++|++|||||++
T Consensus 279 dL~~f~p~~~~~~llg~gd~~~l~e~~~~~~~~~~~~~~~~k~~~g~~~f~~~d~~~q~~~~~kmg~~~~~~~m~pg~~~ 358 (433)
T 3kl4_A 279 ELETFNAKRFVSRILGMGDIESILEKVKGLEEYDKIQKKMEDVMEGKGKLTLRDVYAQIIALRKMGPLSKVLQHIPGLGI 358 (433)
T ss_dssp CEEECCHHHHHHHHHCSSHHHHHHHHHHHC-------------------CCHHHHHHHHHHHHHCCSSSGGGGTTTCCCC
T ss_pred hCccCCHHHHHHHhcCCchHHHHHHHHHHhhhHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhccCHHHHHHhCCCCcc
Confidence 9999999999999999999999999999999999999999999999 99999999999999999999999999999985
Q ss_pred -CC---chhhHHhHHHHHHHHHHHhCCCHHhhcCccccCCCchhhHHhhccCCCCHHHHHHHHHHHHHHHHHHHHH
Q 022952 159 -IT---PAQVREAEKSLKIMEAMIEAMTPEEREKPELLAESPVRRKRVAQDSGKTEQQVSQLVAQLFQMRVRMKNL 230 (289)
Q Consensus 159 -~~---~~~~~~~e~~~k~~~~Ii~SMT~~Er~nP~li~~~~SR~~RIA~GSG~~~~eVn~Llk~f~~m~kmmk~~ 230 (289)
++ +.+.+.+++++++|++||+|||++||+||+||+ +||++|||+||||+++|||+||+||++|++|||+|
T Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~ii~smt~~e~~~p~~~~--~sr~~ria~gsg~~~~~v~~ll~~~~~~~~~~~~~ 432 (433)
T 3kl4_A 359 MLPTPSEDQLKIGEEKIRRWLAALNSMTYKELENPNIID--KSRMRRIAEGSGLEVEEVRELLEWYNNMNRLLKMV 432 (433)
T ss_dssp CSSTTHHHHHHTTSSCCCSHHHHHHSSCSSTTTCGGGCC--HHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHTC
T ss_pred ccccchhhhhhhhHHHHHHHHHHHHcCCHHHhhCchhcc--HHHHHHHHccCCCCHHHHHHHHHHHHHHHHHHHhC
Confidence 44 134456678999999999999999999999995 69999999999999999999999999999999876
No 3
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=100.00 E-value=1.8e-62 Score=478.24 Aligned_cols=221 Identities=48% Similarity=0.815 Sum_probs=200.7
Q ss_pred ChHHHHHHHHHhCCCeEEEEEeCcCcHHHHHHHHHhhhhcCCCeEEEecccCCCCCCccccceeccCCCeEEEecCCCCC
Q 022952 1 MMDELKDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGERME 80 (289)
Q Consensus 1 Lm~ELk~i~~~~~P~ev~LVldAttgqda~~~a~~F~~~v~i~gvIlTKlDetargG~aLS~~~~t~~PI~FIgtGQkVd 80 (289)
+|.||..+..++.|++++||+||+++++++++++.|++.++++|+|+||+|+++++|.++++.+.+++||.|+|+||+++
T Consensus 198 l~~el~~i~~~~~pd~vlLVvDa~tgq~av~~a~~f~~~l~i~GVIlTKlD~~~~~g~alsi~~~~g~PI~flg~Ge~~~ 277 (425)
T 2ffh_A 198 LMGELARLKEVLGPDEVLLVLDAMTGQEALSVARAFDEKVGVTGLVLTKLDGDARGGAALSARHVTGKPIYFAGVSEKPE 277 (425)
T ss_dssp HHHHHHHHHHHHCCSEEEEEEEGGGTTHHHHHHHHHHHHTCCCEEEEESGGGCSSCHHHHHHHHHHCCCEEEEECSSSGG
T ss_pred HHHHHHHhhhccCCceEEEEEeccchHHHHHHHHHHHhcCCceEEEEeCcCCcccHHHHHHHHHHHCCCEEEEeCCCChh
Confidence 37889999999999999999999999999999999998899999999999999999999999999999999999999999
Q ss_pred CCCCCChhHHHHHhhCCCchhHHHHHHHHhccHHHHHHHHHHHHhCCcChHHHHHHHHHHHhcCchHHHHhcCCCCCCCC
Q 022952 81 DLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQKKIMSANFDFNDFLKQTRTVARMGSMSRVIGMIPGMGKIT 160 (289)
Q Consensus 81 DLe~f~p~~la~rlLG~gDi~sLvEk~~~~~~~~~~~~~~~k~~~g~F~l~Df~~Q~~~i~kmG~l~~i~~miPG~~~~~ 160 (289)
||++|+|++++++|+|+||+.+|+|++++.+++++++++++ +|||+||++|++++.||||++.+++||||+++
T Consensus 278 dl~~f~~~~~a~~ilg~gD~~~lie~a~~~~~~~~~~~~~~-----~f~~~d~~~ql~~~~kmg~~~~~~~~~Pg~~~-- 350 (425)
T 2ffh_A 278 GLEPFYPERLAGRILGMGDVASLAEKVRAAGLEAEAPKSAK-----ELSLEDFLKQMQNLKRLGPFSEILGLLPGVPQ-- 350 (425)
T ss_dssp GEEECCHHHHHHHHHTSSCCCCHHHHHHHC----------------CCCHHHHHHHHHHHHHTCCCTTGGGTSCSCSC--
T ss_pred hccccCHHHHHHHHhcCCcHHHHHHhcccccCHHHHHHHHH-----hcCHHHHHHHHHHhhCcCChhhhhccCCCchh--
Confidence 99999999999999999999999999999888777766653 99999999999999999999999999999973
Q ss_pred chhhHHhHHHHHHHHHHHhCCCHHhhcCccccCCCchhhHHhhccCCCCHHHHHHHHHHHHHHHHHHHHHhc
Q 022952 161 PAQVREAEKSLKIMEAMIEAMTPEEREKPELLAESPVRRKRVAQDSGKTEQQVSQLVAQLFQMRVRMKNLMG 232 (289)
Q Consensus 161 ~~~~~~~e~~~k~~~~Ii~SMT~~Er~nP~li~~~~SR~~RIA~GSG~~~~eVn~Llk~f~~m~kmmk~~~~ 232 (289)
+++.+++++++|++||+|||++||+||++|+ +||++|||+||||+++|||+||+||++|++|||+|.+
T Consensus 351 --~~~~~~~~~~~~~~i~~smt~~e~~~p~~~~--~sr~~ria~gsg~~~~~v~~ll~~~~~~~~~~~~~~~ 418 (425)
T 2ffh_A 351 --GLKVDEKAIKRLEAIVLSMTPEERKDPRILN--GSRRKRIAKGSGTSVQEVNRFIKAFEEMKALMKSLEK 418 (425)
T ss_dssp --CTTSCHHHHHHHHHHHHTSCHHHHHCGGGCC--HHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred --hccccHHHHHHHHHHHHcCCHHHhcCccccC--hHHHHHHHccCCCCHHHHHHHHHHHHHHHHHHHHhcC
Confidence 2346788999999999999999999999995 6999999999999999999999999999999998865
No 4
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=100.00 E-value=5.7e-58 Score=446.37 Aligned_cols=227 Identities=48% Similarity=0.812 Sum_probs=206.6
Q ss_pred hHHHHHHHHHhCCCeEEEEEeCcCcHHHHHHHHHhhhhcCCCeEEEecccCCCCCCccccceeccCCCeEEEecCCCCCC
Q 022952 2 MDELKDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGERMED 81 (289)
Q Consensus 2 m~ELk~i~~~~~P~ev~LVldAttgqda~~~a~~F~~~v~i~gvIlTKlDetargG~aLS~~~~t~~PI~FIgtGQkVdD 81 (289)
+.||..+..++.|++++||+||++|+++.++++.|+..+++.|+|+||+|+++++|.++++...+++||.|+|+||+++|
T Consensus 202 ~~~L~~~~~~~~p~~vllVvda~~g~~~~~~~~~f~~~l~i~gvVlnK~D~~~~~g~~l~i~~~~~~Pi~~iG~ge~v~d 281 (433)
T 2xxa_A 202 MDEIKQVHASINPVETLFVVDAMTGQDAANTAKAFNEALPLTGVVLTKVDGDARGGAALSIRHITGKPIKFLGVGEKTEA 281 (433)
T ss_dssp HHHHHHHHHHSCCSEEEEEEETTBCTTHHHHHHHHHHHSCCCCEEEECTTSSSCCTHHHHHHHHHCCCEEEEECSSSSSC
T ss_pred HHHHHHHHHhhcCcceeEEeecchhHHHHHHHHHHhccCCCeEEEEecCCCCccHHHHHHHHHHHCCCeEEEecCCCchh
Confidence 67888888888999999999999999999999999988999999999999999999999999999999999999999999
Q ss_pred CCCCChhHHHHHhhCCCchhHHHHHHHHhccHHHHHHHHHHHHhC-CcChHHHHHHHHHHHhcCchHHHHhcCCCCCCCC
Q 022952 82 LEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQKKIMSA-NFDFNDFLKQTRTVARMGSMSRVIGMIPGMGKIT 160 (289)
Q Consensus 82 Le~f~p~~la~rlLG~gDi~sLvEk~~~~~~~~~~~~~~~k~~~g-~F~l~Df~~Q~~~i~kmG~l~~i~~miPG~~~~~ 160 (289)
|++|+|++++++|+|+||+.+|+|++++.+++++++++.+|+.+| +||++||++|++++.+||+++.+++||||+++++
T Consensus 282 l~~f~p~~~a~~l~g~gD~~~Lie~a~~~~~~~~~~~l~~k~~~~~~f~~~d~~~ql~~~~~~g~~~~~~~~lPg~~~~~ 361 (433)
T 2xxa_A 282 LEPFHPDRIASRILGMGDVLSLIEDIESKVDRAQAEKLASKLKKGDGFDLNDFLEQLRQMKNMGGMASLMGKLPGMGQIP 361 (433)
T ss_dssp EEECCHHHHHHHHHCCCTTHHHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHSCSSCHHHHCC--------
T ss_pred hhhcChHHHHHHHhCccchHHHHHHHHHhhhhhhhHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCchhhhhcCcCcchhh
Confidence 999999999999999999999999999998888899999999999 8999999999999999999999999999998764
Q ss_pred chhhH--HhHHHHHHHHHHHhCCCHHhhcCccccCCCchhhHHhhccCCCCHHHHHHHHHHHHHHHHHHHHHh
Q 022952 161 PAQVR--EAEKSLKIMEAMIEAMTPEEREKPELLAESPVRRKRVAQDSGKTEQQVSQLVAQLFQMRVRMKNLM 231 (289)
Q Consensus 161 ~~~~~--~~e~~~k~~~~Ii~SMT~~Er~nP~li~~~~SR~~RIA~GSG~~~~eVn~Llk~f~~m~kmmk~~~ 231 (289)
++++ .++++++++++||+|||++||+||++|+ +||++|||+|||++++|||+||+||++|++|||+|.
T Consensus 362 -~~~~~~~~~~~~~~~~~ii~smt~~er~~~~~~~--~sr~~ria~gsg~~~~~v~~l~~~~~~~~~~~~~~~ 431 (433)
T 2xxa_A 362 -DNVKSQMDDKVLVRMEAIINSMTMKERAKPEIIK--GSRKRRIAAGSGMQVQDVNRLLKQFDDMQRMMKKMK 431 (433)
T ss_dssp --------CHHHHHHHHHHHHTSCHHHHHCGGGCC--HHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHCC
T ss_pred -hhhhccccHHHHHHHHHHHHcCCHHHhcCccccC--HHHHHHHHccCCCCHHHHHHHHHHHHHHHHHHHHhc
Confidence 2333 5678899999999999999999999995 699999999999999999999999999999999875
No 5
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=100.00 E-value=1.7e-55 Score=428.80 Aligned_cols=226 Identities=36% Similarity=0.664 Sum_probs=193.2
Q ss_pred hHHHHHHHHHhCCCeEEEEEeCcCcHHHHHHHHHhhhhc-CCCeEEEecccCCCCCCccccceeccCCCeEEEecCCCCC
Q 022952 2 MDELKDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEI-GITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGERME 80 (289)
Q Consensus 2 m~ELk~i~~~~~P~ev~LVldAttgqda~~~a~~F~~~v-~i~gvIlTKlDetargG~aLS~~~~t~~PI~FIgtGQkVd 80 (289)
+.||..+..++.|++++||+||++|+++.++++.|+..+ ++.++|+||+|+++++|.++++.+.++.||.|+|+||+++
T Consensus 199 ~~~l~~i~~~~~~d~vllVvda~~g~~~~~~~~~~~~~~~~i~gvVlnK~D~~~~~g~~l~~~~~~~~pi~~ig~Ge~~~ 278 (432)
T 2v3c_C 199 LEEMKQIKEITNPDEIILVIDGTIGQQAGIQAKAFKEAVGEIGSIIVTKLDGSAKGGGALSAVAETKAPIKFIGIGEGID 278 (432)
T ss_dssp HHHHHHTTSSSCCSEEEEEEEGGGGGGHHHHHHHHHTTSCSCEEEEEECSSSCSTTHHHHHHHHHSSCCEEEECCSSSSS
T ss_pred HHHHHHHHHHhcCcceeEEeeccccHHHHHHHHHHhhcccCCeEEEEeCCCCccchHHHHHHHHHHCCCEEEeecCcccc
Confidence 567777777788999999999999999999999999888 8999999999999999999999999999999999999999
Q ss_pred CCCCCChhHHHHHhhCCCchhHHHHHHHHhccHHHHHHHHHHHHhCCcChHHHHHHHHHHHhcCchHHHHhcCCCCCCCC
Q 022952 81 DLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQKKIMSANFDFNDFLKQTRTVARMGSMSRVIGMIPGMGKIT 160 (289)
Q Consensus 81 DLe~f~p~~la~rlLG~gDi~sLvEk~~~~~~~~~~~~~~~k~~~g~F~l~Df~~Q~~~i~kmG~l~~i~~miPG~~~~~ 160 (289)
||++|+|..++++++|+||+.+|+|++++.+++++ +++.+|+..|+||++||++|++++.||||+++|++||||++.+.
T Consensus 279 dl~~f~~~~~~s~l~g~gdi~~L~e~~~~~~~e~~-~~~~~k~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~P~~~~~~ 357 (432)
T 2v3c_C 279 DLEPFDPKKFISRLLGMGDLESLLEKAEDMVDEKT-EESIDAIMRGKFTLNELMTQLEAIENMGSMKKILSMIPGFGGAM 357 (432)
T ss_dssp SCCBCCHHHHHHHHTCSSCSSTTSSTTTSCSCSSS-STTHHHHCCSCCHHHHHHHHTTTTSCC-----------------
T ss_pred ccccCCHHHHHHHHcCCCcHHHHHHHHHHHHHhhh-HHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHcccccccc
Confidence 99999999999999999999999999999998877 88999999999999999999999999999999999999987642
Q ss_pred -chhhHHhHHHHHHHHHHHhCCCHHhhcCccccCCCchhhHHhhccCCCCHHHHHHHHHHHHHHHHHHHHH
Q 022952 161 -PAQVREAEKSLKIMEAMIEAMTPEEREKPELLAESPVRRKRVAQDSGKTEQQVSQLVAQLFQMRVRMKNL 230 (289)
Q Consensus 161 -~~~~~~~e~~~k~~~~Ii~SMT~~Er~nP~li~~~~SR~~RIA~GSG~~~~eVn~Llk~f~~m~kmmk~~ 230 (289)
..+.+.+++.+++|++||+|||++||+||++|+ .||++|||+|||++++|||+||+||++|++||+++
T Consensus 358 ~~~~~~~~~~~~~~~~a~i~smt~~er~~~~~i~--~sr~~rI~~gsg~~~~~v~~ll~~~~~~~~~~~~~ 426 (432)
T 2v3c_C 358 PKELSHLTEAKIKKYKVIISSMTKEERENPKIIK--ASRIRRIARGSGTTENDVREVLRYYETTKNAIDKL 426 (432)
T ss_dssp ------CCHHHHHHHHHHHTTSCHHHHSSCTTCC--HHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHCCCC
T ss_pred chhhhcccHHHHHHHHHHHHhCCHHHhhCccccC--HHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHh
Confidence 233344577899999999999999999999995 69999999999999999999999999998887754
No 6
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=100.00 E-value=7.1e-56 Score=439.77 Aligned_cols=230 Identities=30% Similarity=0.614 Sum_probs=212.7
Q ss_pred hHHHHHHHHHhCCCeEEEEEeCcCcHHHHHHHHHhhhhcCCCeEEEecccCCCCCCccccceeccCCCeEEEecCCCCCC
Q 022952 2 MDELKDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGERMED 81 (289)
Q Consensus 2 m~ELk~i~~~~~P~ev~LVldAttgqda~~~a~~F~~~v~i~gvIlTKlDetargG~aLS~~~~t~~PI~FIgtGQkVdD 81 (289)
++|+..+.+++.|+.++||+||++|+++.++++.|++.++++++|+||+|+++++|.++++.+.+++||.|+|+||+++|
T Consensus 202 ~~el~~~~~~i~pd~vllVvDa~~g~~~~~~a~~~~~~~~i~gvVlNK~D~~~~~g~~l~~~~~~g~PI~fig~ge~~~d 281 (504)
T 2j37_W 202 FEEMLQVANAIQPDNIVYVMDASIGQACEAQAKAFKDKVDVASVIVTKLDGHAKGGGALSAVAATKSPIIFIGTGEHIDD 281 (504)
T ss_dssp HHHHHHHHHHHCCSEEEEEEETTCCTTHHHHHHHHHHHHCCCCEEEECTTSCCCCTHHHHHHHHHCCCEEEEECSSSTTC
T ss_pred HHHHHHHHhhhcCceEEEEEeccccccHHHHHHHHHhhcCceEEEEeCCccccchHHHHHHHHHhCCCeEEeccccchhh
Confidence 57888888888999999999999999989999999988999999999999999999999999999999999999999999
Q ss_pred CCCCChhHHHHHhhCCCchhHHHHHHHHhccHHHHHHHHHHHHhCCcChHHHHHHHHHHHhcCchHHHHhcCCCCCC--C
Q 022952 82 LEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQKKIMSANFDFNDFLKQTRTVARMGSMSRVIGMIPGMGK--I 159 (289)
Q Consensus 82 Le~f~p~~la~rlLG~gDi~sLvEk~~~~~~~~~~~~~~~k~~~g~F~l~Df~~Q~~~i~kmG~l~~i~~miPG~~~--~ 159 (289)
|++|+|..++++++|+||+.+|+|++++. .+++++++.+|+.+|+||++||++|++++.+||++++|++||||++. +
T Consensus 282 l~~f~~~~~vsal~G~Gdi~~Lie~i~e~-~~~~~~~l~~k~~~g~~~l~d~~~~l~~~~~~G~~~~~~~~ipg~~~~~~ 360 (504)
T 2j37_W 282 FEPFKTQPFISKLLGMGDIEGLIDKVNEL-KLDDNEALIEKLKHGQFTLRDMYEQFQNIMKMGPFSQILGMIPGFGTDFM 360 (504)
T ss_dssp EECCTHHHHHHCCCTTTTTTTTHHHHTTT-TTCCCTTTTTSCTTSGGGGCCCHHHHHHCCCCCCCCSSCCCCSCCSCGGG
T ss_pred hhccCcceeeehhcCCCcHHHHHHHHHHH-HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHhccccchhhc
Confidence 99999999999999999999999999988 45557789999999999999999999999999999999999999987 5
Q ss_pred CchhhHHhHHHHHHHHHHHhCCCHHhhcC---ccccCCCchhhHHhhccCCCCHHHHHHHHHHHHHHHHHHHHHhc
Q 022952 160 TPAQVREAEKSLKIMEAMIEAMTPEEREK---PELLAESPVRRKRVAQDSGKTEQQVSQLVAQLFQMRVRMKNLMG 232 (289)
Q Consensus 160 ~~~~~~~~e~~~k~~~~Ii~SMT~~Er~n---P~li~~~~SR~~RIA~GSG~~~~eVn~Llk~f~~m~kmmk~~~~ 232 (289)
+..+...+++.++|+++||+|||++||+| |+||..++||++|||+|||++++|||+||+||++|++|||+|.+
T Consensus 361 ~~~~~~~~~~~~~~~~~ii~smt~~Er~~~~~p~~~~~~~sr~~ria~gsg~~~~~v~~ll~~~~~~~~~~~~~~~ 436 (504)
T 2j37_W 361 SKGNEQESMARLKKLMTIMDSMNDQELDSTDGAKVFSKQPGRIQRVARGSGVSTRDVQELLTQYTKFAQMVKKMGG 436 (504)
T ss_dssp CSCCCCCHHHHHHHHHHHHTTSCHHHHHCTTHHHHHHHCTHHHHHHHHHTTCCHHHHHHHHHHHHHHHCCCCCCSC
T ss_pred cccccccChHhhhhhHHHHHhCCHHHhcCCCCCcccCCChHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHhcc
Confidence 43344457889999999999999999999 99994346999999999999999999999999999999888754
No 7
>2jqe_A SRP54, signal recognition 54 kDa protein; AF54, structure, solution, signaling protein; NMR {Archaeoglobus fulgidus}
Probab=100.00 E-value=9.8e-43 Score=288.29 Aligned_cols=115 Identities=25% Similarity=0.500 Sum_probs=100.6
Q ss_pred HHHHHhCCcChHHHHHHHHHHHhcCchHHHHhcCC-CCCC-CCchhhHHhHHHHHHHHHHHhCCCHHhhcCccccCCCch
Q 022952 120 QKKIMSANFDFNDFLKQTRTVARMGSMSRVIGMIP-GMGK-ITPAQVREAEKSLKIMEAMIEAMTPEEREKPELLAESPV 197 (289)
Q Consensus 120 ~~k~~~g~F~l~Df~~Q~~~i~kmG~l~~i~~miP-G~~~-~~~~~~~~~e~~~k~~~~Ii~SMT~~Er~nP~li~~~~S 197 (289)
++||.+|+|||+|||+|+++++||||+++|++||| |+++ +++.+++.+++++++|++||+|||++||+||+||+ +|
T Consensus 2 ~~k~~~g~Ftl~Df~~Ql~qi~kMG~l~~i~~MiP~G~~~~~~~~~~~~~e~~lkr~~aII~SMT~~Er~~P~ii~--~S 79 (119)
T 2jqe_A 2 SGTMEKGTFTLKDIYKQIEAMNKMGPVRKIFEMLPFGLGLKVDNDVMEMTQEKMKKFRVIMDSMTEEELLNPKIID--SS 79 (119)
T ss_dssp ---CCCCSSCTHHHHHHHTTCCCCCCCSCSSCCCCSCCCSSCCCCSSCCCCCHHHHHHHHHHHSCHHHHHCGGGCC--HH
T ss_pred hhHHHcCCcCHHHHHHHHHHHHhcCCHHHHHHHCccchhhccchhhHhhhHHHHHHHHHHHHhCCHHHHhChhhcC--HH
Confidence 46889999999999999999999999999999999 9987 65344556788999999999999999999999995 69
Q ss_pred hhHHhhccCCCCHHHHHHHHHHHHHHHHHHHHHhcccCCCCCC
Q 022952 198 RRKRVAQDSGKTEQQVSQLVAQLFQMRVRMKNLMGVMEGGSLP 240 (289)
Q Consensus 198 R~~RIA~GSG~~~~eVn~Llk~f~~m~kmmk~~~~~~~~~~~~ 240 (289)
|++|||+||||+++|||+||+||++|++||++|. +|++|
T Consensus 80 R~~RIA~GSG~~v~eVn~LLkqf~~m~kmmk~m~----~g~~~ 118 (119)
T 2jqe_A 80 RIRRIAIGSGTSPQEVKELLNYYKTMKNLMKKMK----KNKLP 118 (119)
T ss_dssp HHHHHHHHHTSCHHHHHHHHHHHHHHHHHTTTCC----SCCCC
T ss_pred HHHHHHccCCCCHHHHHHHHHHHHHHHHHHHHhc----cCCCC
Confidence 9999999999999999999999999987776544 45555
No 8
>1mfq_C SRP54, signal recognition particle 54KDA protein; RNA-protein complex, A-minor motif, 3-helix junction, signaling protein/RNA complex; HET: CCC; 3.10A {Homo sapiens} SCOP: a.36.1.1
Probab=100.00 E-value=3.7e-41 Score=282.08 Aligned_cols=109 Identities=27% Similarity=0.543 Sum_probs=95.6
Q ss_pred HhCCcChHHHHHHHHHHHhcCchHHHHhcCCCCCC--CCchhhHHhHHHHHHHHHHHhCCCHHhhcC---ccccCCCchh
Q 022952 124 MSANFDFNDFLKQTRTVARMGSMSRVIGMIPGMGK--ITPAQVREAEKSLKIMEAMIEAMTPEEREK---PELLAESPVR 198 (289)
Q Consensus 124 ~~g~F~l~Df~~Q~~~i~kmG~l~~i~~miPG~~~--~~~~~~~~~e~~~k~~~~Ii~SMT~~Er~n---P~li~~~~SR 198 (289)
..|+|||+|||+|+++|+||||+++|++||||+++ +++.+.+.+++++++|++||+|||++||+| |+||+.++||
T Consensus 11 ~~g~Ftl~Df~~Ql~qi~KMG~l~~im~MiPGm~~~~~~~~~~~~~e~~lkr~eaII~SMT~~Er~n~~~P~ii~~~~SR 90 (129)
T 1mfq_C 11 KHGQFTLRDMYEQFQNIMKMGPFSQILGMIPGFGTDFMSKGNEQESMARLKKLMTIMDSMNDQELDSTDGAKVFSKQPGR 90 (129)
T ss_dssp CCSSCCHHHHHHHHHHTTSSHHHHHTTTTCSCC--------CCHHHHHHHHHHHHHHTTSCHHHHTCTTHHHHHHHCTHH
T ss_pred ccCCcCHHHHHHHHHHHHHcCCHHHHHHHCCCCCccccchhhhhhhHHHHHHHHHHHHccCHHHHhcCCCcccccCChHH
Confidence 36899999999999999999999999999999987 654455678899999999999999999999 9999433699
Q ss_pred hHHhhccCCCCHHHHHHHHHHHHHHHHHHHHHhc
Q 022952 199 RKRVAQDSGKTEQQVSQLVAQLFQMRVRMKNLMG 232 (289)
Q Consensus 199 ~~RIA~GSG~~~~eVn~Llk~f~~m~kmmk~~~~ 232 (289)
++|||+||||+++|||+||+||++|++|||+|.+
T Consensus 91 k~RIA~GSG~~v~eVn~LLkqf~qm~kmmKkm~~ 124 (129)
T 1mfq_C 91 IQRVARGSGVSTRDVQELLTQYTKFAQMVKKMGG 124 (129)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHSCS
T ss_pred HHHHHccCCCCHHHHHHHHHHHHHHHHHHHHhcc
Confidence 9999999999999999999999999999998763
No 9
>1hq1_A Signal recognition particle protein; protein-RNA complex, double helix, tetraloop, internal loop, SRP, ribonucleoprotein; HET: CCC; 1.52A {Escherichia coli} SCOP: a.36.1.1 PDB: 3lqx_A* 2pxb_A 2pxd_A 2pxe_A 2pxf_A 2pxk_A 2pxl_A 2pxp_A 2pxq_A 2pxt_A 2pxu_A 2pxv_A
Probab=100.00 E-value=2.7e-41 Score=274.25 Aligned_cols=103 Identities=41% Similarity=0.676 Sum_probs=72.7
Q ss_pred CcChHHHHHHHHHHHhcCchHHHHhcCCCCCCCCc-hhhHHhHHHHHHHHHHHhCCCHHhhcCccccCCCchhhHHhhcc
Q 022952 127 NFDFNDFLKQTRTVARMGSMSRVIGMIPGMGKITP-AQVREAEKSLKIMEAMIEAMTPEEREKPELLAESPVRRKRVAQD 205 (289)
Q Consensus 127 ~F~l~Df~~Q~~~i~kmG~l~~i~~miPG~~~~~~-~~~~~~e~~~k~~~~Ii~SMT~~Er~nP~li~~~~SR~~RIA~G 205 (289)
+|||+|||+|+++|+||||+++|++||||++++++ .+.+.+++++++|++||+|||++||+||+||+ +||++|||+|
T Consensus 1 ~F~l~Df~~Ql~qi~kMG~l~~i~~miPG~~~~~~~~~~~~~~~~lkr~~aII~SMT~~Er~~P~ii~--~SR~~RIA~G 78 (105)
T 1hq1_A 1 GFDLNDFLEQLRQMKNMGGMASLMGKLPGMGQIPDNVKSQMDDKVLVRMEAIINSMTMKERAKPEIIK--GSRKRRIAAG 78 (105)
T ss_dssp CCCHHHHHHHHTC----------------------------CCSSHHHHHHHHHTSCHHHHHCGGGCC--HHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHCCCCCcccchhhhhhhHHHHHHHHHHHHcCCHHHhhChhhcC--HHHHHHHHcc
Confidence 59999999999999999999999999999987753 33445678999999999999999999999995 6999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHh
Q 022952 206 SGKTEQQVSQLVAQLFQMRVRMKNLM 231 (289)
Q Consensus 206 SG~~~~eVn~Llk~f~~m~kmmk~~~ 231 (289)
|||+++|||+||++|++|++|||+|.
T Consensus 79 SG~~v~eVn~LLkqf~~m~kmmk~m~ 104 (105)
T 1hq1_A 79 SGMQVQDVNRLLKQFDDMQRMMKKMK 104 (105)
T ss_dssp HTCCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHhcc
Confidence 99999999999999999999999875
No 10
>1qb2_A SRP54, human signal recognition particle 54 KD protein; alpha-helix, helix-turn-helix, signaling protein; 2.10A {Homo sapiens} SCOP: a.36.1.1 PDB: 1ry1_W* 2go5_W
Probab=100.00 E-value=1.1e-40 Score=272.42 Aligned_cols=104 Identities=27% Similarity=0.558 Sum_probs=93.4
Q ss_pred CcChHHHHHHHHHHHhcCchHHHHhcCCCCCC-C-CchhhHHhHHHHHHHHHHHhCCCHHhhcC---ccccCCCchhhHH
Q 022952 127 NFDFNDFLKQTRTVARMGSMSRVIGMIPGMGK-I-TPAQVREAEKSLKIMEAMIEAMTPEEREK---PELLAESPVRRKR 201 (289)
Q Consensus 127 ~F~l~Df~~Q~~~i~kmG~l~~i~~miPG~~~-~-~~~~~~~~e~~~k~~~~Ii~SMT~~Er~n---P~li~~~~SR~~R 201 (289)
+|||+|||+|+++|+||||+++|++||||+++ + +..+.+.+++++++|++||+|||++||+| |+||+.++||++|
T Consensus 1 ~Ftl~Df~~Ql~qi~kMG~l~~i~~MiPG~~~~~~~~~~~~~~~~~lkr~~aII~SMT~~Er~~~~~P~ii~~~~SR~~R 80 (109)
T 1qb2_A 1 QFTLRDMYEQFQNIMKMGPFSQILGMIPGFGTDFMSKGNEQESMARLKKLMTIMDSMNDQELDSTDGAKVFSKQPGRIQR 80 (109)
T ss_dssp CCCHHHHHHHHHHHHHTHHHHHHHHHSTTSCTTTTCTTCHHHHHHHHHHHHHHHTTSCHHHHHSTTTHHHHHHSTHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHCCCCcccccchhhhhhhHHHHHHHHHHHHcCCHHHHhcCCCccccccchHHHHH
Confidence 59999999999999999999999999999987 5 44445577899999999999999999999 9999744699999
Q ss_pred hhccCCCCHHHHHHHHHHHHHHHHHHHHH
Q 022952 202 VAQDSGKTEQQVSQLVAQLFQMRVRMKNL 230 (289)
Q Consensus 202 IA~GSG~~~~eVn~Llk~f~~m~kmmk~~ 230 (289)
||+||||+++|||+||+||++|++|||+|
T Consensus 81 IA~GSG~~v~eVn~LLkqf~~m~kmmk~m 109 (109)
T 1qb2_A 81 VARGSGVSTRDVQELLTQYTKFAQMVKKM 109 (109)
T ss_dssp HHHHTTCCHHHHHHHHHHHHHHHHHC---
T ss_pred HHccCCCCHHHHHHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999988864
No 11
>1dul_A Signal recognition particle protein (fifty-four homolog); protein-RNA complex, double helix, tetraloop, internal loop, SRP, ribonucleoprotein; HET: CCC; 1.80A {Escherichia coli} SCOP: a.36.1.1 PDB: 2xkv_C
Probab=99.94 E-value=8.9e-28 Score=181.65 Aligned_cols=66 Identities=38% Similarity=0.506 Sum_probs=61.2
Q ss_pred hhHHhHHHHHHHHHHHhCCCHHhhcCccccCCCchhhHHhhccCCCCHHHHHHHHHHHHHHHHHHHHH
Q 022952 163 QVREAEKSLKIMEAMIEAMTPEEREKPELLAESPVRRKRVAQDSGKTEQQVSQLVAQLFQMRVRMKNL 230 (289)
Q Consensus 163 ~~~~~e~~~k~~~~Ii~SMT~~Er~nP~li~~~~SR~~RIA~GSG~~~~eVn~Llk~f~~m~kmmk~~ 230 (289)
+++.++++++++++||+|||++||+||+||+ +||++|||+|||++++|||+||+||++|++|||+|
T Consensus 4 ~~~~~e~~lkr~~aII~SMT~~Er~nP~ii~--~SR~~RIA~GSG~~v~eVn~Llkqf~~m~kmmk~m 69 (69)
T 1dul_A 4 NDFLEQKVLVRMEAIINSMTMKERAKPEIIK--GSRKRRIAAGSGMQVQDVNRLLKQFDDMQRMMKKM 69 (69)
T ss_dssp HHHHHCCHHHHHHHHHHTSCHHHHHCGGGCC--HHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHC
T ss_pred hhhhhHHHHHHHHHHHHcCCHHHHhCccccC--HHHHHHHHccCCCCHHHHHHHHHHHHHHHHHHhcC
Confidence 3456778999999999999999999999995 69999999999999999999999999999999874
No 12
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=99.86 E-value=3.4e-22 Score=186.57 Aligned_cols=97 Identities=44% Similarity=0.776 Sum_probs=91.7
Q ss_pred ChHHHHHHHHHh------CCCeEEEEEeCcCcHHHHHHHHHhhhhcCCCeEEEecccCCCCCCccccceeccCCCeEEEe
Q 022952 1 MMDELKDVKRVL------NPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAALSVKEVSGKPIKLVG 74 (289)
Q Consensus 1 Lm~ELk~i~~~~------~P~ev~LVldAttgqda~~~a~~F~~~v~i~gvIlTKlDetargG~aLS~~~~t~~PI~FIg 74 (289)
+|+||+++.+++ .|++++||+||+++++++++++.|.+.++++|+|+||+|+++++|.++|+++.+++||+|+|
T Consensus 204 l~~eL~~l~~~i~~~i~~~p~~vllVlda~t~~~~l~~a~~~~~~~~i~gvVlTk~D~~~~gG~~l~~~~~~~~Pi~~i~ 283 (306)
T 1vma_A 204 LMEELRKVHRVVKKKIPDAPHETLLVIDATTGQNGLVQAKIFKEAVNVTGIILTKLDGTAKGGITLAIARELGIPIKFIG 283 (306)
T ss_dssp HHHHHHHHHHHGGGTCTTCCSEEEEEEEGGGHHHHHHHHHHHHHHSCCCEEEEECGGGCSCTTHHHHHHHHHCCCEEEEE
T ss_pred HHHHHHHHHHHHhhccCCCCcEEEEEEECCCCHHHHHHHHHHHhcCCCCEEEEeCCCCccchHHHHHHHHHHCCCEEEEe
Confidence 378888888775 49999999999999999999999998899999999999999999999999999999999999
Q ss_pred cCCCCCCCCCCChhHHHHHhhCC
Q 022952 75 RGERMEDLEPFYPDRMAGRILGM 97 (289)
Q Consensus 75 tGQkVdDLe~f~p~~la~rlLG~ 97 (289)
+||++|||++|+|++|+++|||.
T Consensus 284 ~Ge~~~dl~~f~~~~~~~~ll~~ 306 (306)
T 1vma_A 284 VGEKAEDLRPFDPEAFVEVLLSE 306 (306)
T ss_dssp CSSSGGGEEECCHHHHHHHHTCC
T ss_pred CCCChhhcccCCHHHHHHHHhCC
Confidence 99999999999999999999973
No 13
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=99.85 E-value=8.3e-22 Score=185.56 Aligned_cols=98 Identities=44% Similarity=0.699 Sum_probs=93.8
Q ss_pred ChHHHHHHHHHhCCCeEEEEEeCcCcHHHHHHHHHhhhhcCCCeEEEecccCCCCCCccccceeccCCCeEEEecCCCCC
Q 022952 1 MMDELKDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGERME 80 (289)
Q Consensus 1 Lm~ELk~i~~~~~P~ev~LVldAttgqda~~~a~~F~~~v~i~gvIlTKlDetargG~aLS~~~~t~~PI~FIgtGQkVd 80 (289)
+++||..+..++.|+++++|+|+++|+++.++++.|++.++++++|+||+|+++++|.++++++.+++||.|||+||+|+
T Consensus 229 l~~eL~~i~ral~~de~llvLDa~t~~~~~~~~~~~~~~~~it~iilTKlD~~a~~G~~l~~~~~~~~pi~~i~~Ge~v~ 308 (328)
T 3e70_C 229 LMDEMKKIARVTKPNLVIFVGDALAGNAIVEQARQFNEAVKIDGIILTKLDADARGGAALSISYVIDAPILFVGVGQGYD 308 (328)
T ss_dssp HHHHHHHHHHHHCCSEEEEEEEGGGTTHHHHHHHHHHHHSCCCEEEEECGGGCSCCHHHHHHHHHHTCCEEEEECSSSTT
T ss_pred HHHHHHHHHHHhcCCCCEEEEecHHHHHHHHHHHHHHHhcCCCEEEEeCcCCccchhHHHHHHHHHCCCEEEEeCCCCcc
Confidence 47899999999999999999999999999999999998899999999999999999999999999999999999999999
Q ss_pred CCCCCChhHHHHHhhCCC
Q 022952 81 DLEPFYPDRMAGRILGMG 98 (289)
Q Consensus 81 DLe~f~p~~la~rlLG~g 98 (289)
||++|+|++|+++|||..
T Consensus 309 dl~~~~~~~~~~~llg~~ 326 (328)
T 3e70_C 309 DLRPFEKEWFLERIFGEE 326 (328)
T ss_dssp CEEECCHHHHHHHHTC--
T ss_pred ccccCCHHHHHHHHhCCc
Confidence 999999999999999864
No 14
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=99.84 E-value=1.3e-21 Score=194.65 Aligned_cols=99 Identities=44% Similarity=0.778 Sum_probs=92.4
Q ss_pred ChHHHHHHHHHhC------CCeEEEEEeCcCcHHHHHHHHHhhhhcCCCeEEEecccCCCCCCccccceeccCCCeEEEe
Q 022952 1 MMDELKDVKRVLN------PTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAALSVKEVSGKPIKLVG 74 (289)
Q Consensus 1 Lm~ELk~i~~~~~------P~ev~LVldAttgqda~~~a~~F~~~v~i~gvIlTKlDetargG~aLS~~~~t~~PI~FIg 74 (289)
+|+||+++..+++ |++++||+|+++||+++++++.|+..++++++|+||+|+|+++|.++++++.+++||+|||
T Consensus 393 lm~EL~kiv~iar~l~~~~P~evLLvLDattGq~al~~ak~f~~~~~itgvIlTKLD~takgG~~lsi~~~~~~PI~fig 472 (503)
T 2yhs_A 393 LMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQNAVSQAKLFHEAVGLTGITLTKLDGTAKGGVIFSVADQFGIPIRYIG 472 (503)
T ss_dssp HHHHHHHHHHHHHTTCTTCSSEEEEEEEGGGTHHHHHHHHHHHHHTCCSEEEEECGGGCSCCTHHHHHHHHHCCCEEEEE
T ss_pred HHHHHHHHHHHHHHhccCCCCeeEEEecCcccHHHHHHHHHHHhhcCCCEEEEEcCCCcccccHHHHHHHHHCCCEEEEe
Confidence 4788888877654 9999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCCCCChhHHHHHhhCCCc
Q 022952 75 RGERMEDLEPFYPDRMAGRILGMGD 99 (289)
Q Consensus 75 tGQkVdDLe~f~p~~la~rlLG~gD 99 (289)
+||+|+||++|+|++|+++|||+.|
T Consensus 473 ~Ge~vdDL~~f~~~~~v~~llg~~~ 497 (503)
T 2yhs_A 473 VGERIEDLRPFKADDFIEALFARED 497 (503)
T ss_dssp CSSSGGGEEECCHHHHHHHHHCC--
T ss_pred cCCChhhcccCCHHHHHHHHhcccc
Confidence 9999999999999999999999755
No 15
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=99.83 E-value=5.2e-21 Score=176.68 Aligned_cols=97 Identities=63% Similarity=1.044 Sum_probs=87.6
Q ss_pred hHHHHHHHHHhCCCeEEEEEeCcCcHHHHHHHHHhhhhcCCCeEEEecccCCCCCCccccceeccCCCeEEEecCCCCCC
Q 022952 2 MDELKDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGERMED 81 (289)
Q Consensus 2 m~ELk~i~~~~~P~ev~LVldAttgqda~~~a~~F~~~v~i~gvIlTKlDetargG~aLS~~~~t~~PI~FIgtGQkVdD 81 (289)
|.++.++.+.+.|++++||+|+++++++.++++.|++.+++.|+|+||+|+++++|.++++.+.+++||.|+|+||+++|
T Consensus 199 ~~~l~~~~~~~~~~~~~lv~~~~~~~~~~~~~~~~~~~~~i~givlnk~d~~~~~g~~~~~~~~~~~pi~~i~~g~~~~d 278 (295)
T 1ls1_A 199 MGELARLKEVLGPDEVLLVLDAMTGQEALSVARAFDEKVGVTGLVLTKLDGDARGGAALSARHVTGKPIYFAGVSEKPEG 278 (295)
T ss_dssp HHHHHHHHHHHCCSEEEEEEEGGGTHHHHHHHHHHHHHTCCCEEEEECGGGCSSCHHHHHHHHHHCCCEEEEC------C
T ss_pred HHHHHHHhhhcCCCEEEEEEeCCCcHHHHHHHHHHhhcCCCCEEEEECCCCCccHHHHHHHHHHHCcCEEEEeCCCCccc
Confidence 67888888888999999999999999999999999988999999999999999999999999999999999999999999
Q ss_pred CCCCChhHHHHHhhCCC
Q 022952 82 LEPFYPDRMAGRILGMG 98 (289)
Q Consensus 82 Le~f~p~~la~rlLG~g 98 (289)
|++|+|++|+++|||||
T Consensus 279 l~~f~~~~~~~~ll~~g 295 (295)
T 1ls1_A 279 LEPFYPERLAGRILGMG 295 (295)
T ss_dssp CEECCHHHHHHHHTTCC
T ss_pred cccCCHHHHHHHHhcCC
Confidence 99999999999999997
No 16
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=99.81 E-value=1.4e-20 Score=176.37 Aligned_cols=99 Identities=38% Similarity=0.665 Sum_probs=92.6
Q ss_pred ChHHHHHHHHHhC------CCeEEEEEeCcCcHHHHHHHHHhhhhcCCCeEEEecccCCCCCCccccceeccCCCeEEEe
Q 022952 1 MMDELKDVKRVLN------PTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAALSVKEVSGKPIKLVG 74 (289)
Q Consensus 1 Lm~ELk~i~~~~~------P~ev~LVldAttgqda~~~a~~F~~~v~i~gvIlTKlDetargG~aLS~~~~t~~PI~FIg 74 (289)
+|+||.++..++. |++++||+||+++++++++++.|++.++++|+|+||+|+++++|.++++.+.+++||.|+|
T Consensus 209 l~~eL~~~~~vi~~~~p~~~d~vllVl~a~~~~~~l~~~~~~~~~~~i~GvVltk~d~~~~~g~~~~~~~~~~~Pi~~i~ 288 (320)
T 1zu4_A 209 LMAELEKMNKIIQQVEKSAPHEVLLVIDATTGQNGVIQAEEFSKVADVSGIILTKMDSTSKGGIGLAIKELLNIPIKMIG 288 (320)
T ss_dssp HHHHHHHHHHHHHTTCTTCCSEEEEEEEGGGTHHHHHHHHHHTTTSCCCEEEEECGGGCSCTTHHHHHHHHHCCCEEEEE
T ss_pred HHHHHHHHHHHHhcccCCCCceEEEEEECCCcHHHHHHHHHHhhcCCCcEEEEeCCCCCCchhHHHHHHHHHCcCEEEEe
Confidence 3678888877664 8999999999999999999999998899999999999999999999999999999999999
Q ss_pred cCCCCCCCCCCChhHHHHHhhCCCch
Q 022952 75 RGERMEDLEPFYPDRMAGRILGMGDV 100 (289)
Q Consensus 75 tGQkVdDLe~f~p~~la~rlLG~gDi 100 (289)
+||+|+||++|+|++|+++||| ||+
T Consensus 289 ~Ge~~~dl~~~~~~~~~~~ll~-~~~ 313 (320)
T 1zu4_A 289 VGEKVDDLLAFDIDQYIVHLSS-GFM 313 (320)
T ss_dssp CSSSTTCEEECCHHHHHHHHTG-GGC
T ss_pred CCCCccccccCCHHHHHHHHhC-Ccc
Confidence 9999999999999999999998 665
No 17
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=99.81 E-value=2.4e-20 Score=173.60 Aligned_cols=95 Identities=44% Similarity=0.767 Sum_probs=89.0
Q ss_pred hHHHHHHHHHh------CCCeEEEEEeCcCcHHHHHHHHHhhhhcCCCeEEEecccCCCCCCccccceeccCCCeEEEec
Q 022952 2 MDELKDVKRVL------NPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGR 75 (289)
Q Consensus 2 m~ELk~i~~~~------~P~ev~LVldAttgqda~~~a~~F~~~v~i~gvIlTKlDetargG~aLS~~~~t~~PI~FIgt 75 (289)
++||+++..++ .|++++||+|+++++++.+++..|++..+++++|+||+|+++++|.++++.+.+++||+|||+
T Consensus 203 ~~eLs~~r~~iaRal~~~P~~~lLvLDa~t~~~~~~~~~~~~~~~~~t~iivTh~d~~a~gg~~l~i~~~~~~pi~~ig~ 282 (304)
T 1rj9_A 203 MEELKKVKRAIAKADPEEPKEVWLVLDAVTGQNGLEQAKKFHEAVGLTGVIVTKLDGTAKGGVLIPIVRTLKVPIKFVGV 282 (304)
T ss_dssp HHHHHHHHHHHHHHCTTCCSEEEEEEETTBCTHHHHHHHHHHHHHCCSEEEEECTTSSCCCTTHHHHHHHHCCCEEEEEC
T ss_pred HHHHHHHHHHHHHhhcCCCCeEEEEEcHHHHHHHHHHHHHHHHHcCCcEEEEECCcccccccHHHHHHHHHCCCeEEEeC
Confidence 56777665543 599999999999999999999999988899999999999999999999999999999999999
Q ss_pred CCCCCCCCCCChhHHHHHhhC
Q 022952 76 GERMEDLEPFYPDRMAGRILG 96 (289)
Q Consensus 76 GQkVdDLe~f~p~~la~rlLG 96 (289)
||++|||++|+|++|+++|||
T Consensus 283 Ge~~~dl~~f~~~~~~~~ll~ 303 (304)
T 1rj9_A 283 GEGPDDLQPFDPEAFVEALLE 303 (304)
T ss_dssp SSSTTCEEECCHHHHHHHHTC
T ss_pred CCChhhcccCCHHHHHHHHhC
Confidence 999999999999999999997
No 18
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=99.79 E-value=3.3e-20 Score=177.09 Aligned_cols=95 Identities=46% Similarity=0.752 Sum_probs=87.9
Q ss_pred hHHHHHHHHH------hCCCeEEEEEeCcCcHHHHHHHHHhhhhcCCCeEEEecccCCCCCCccccceeccCCCeEEEec
Q 022952 2 MDELKDVKRV------LNPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGR 75 (289)
Q Consensus 2 m~ELk~i~~~------~~P~ev~LVldAttgqda~~~a~~F~~~v~i~gvIlTKlDetargG~aLS~~~~t~~PI~FIgt 75 (289)
+.||.+...+ .+|++++||+|+++|+|+.++++.|++.++++++|+||+|++++||.+||+++.++.||.|+|+
T Consensus 259 ~~eLSkqr~~iaral~~~P~e~lLvLDpttglD~~~~~~~~~~~~g~t~iiiThlD~~~~gG~~lsi~~~~~~pI~~ig~ 338 (359)
T 2og2_A 259 MEELIACKKAVGKIVSGAPNEILLVLDGNTGLNMLPQAREFNEVVGITGLILTKLDGSARGGCVVSVVEELGIPVKFIGV 338 (359)
T ss_dssp HHHHHHHHHHHHHHSTTCCSEEEEEEEGGGGGGGHHHHHHHHHHTCCCEEEEESCTTCSCTHHHHHHHHHHCCCEEEEEC
T ss_pred HHHHHHHHHHHHHHHhcCCCceEEEEcCCCCCCHHHHHHHHHHhcCCeEEEEecCcccccccHHHHHHHHhCCCEEEEeC
Confidence 5677755443 2599999999999999999999999988999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCChhHHHHHhhC
Q 022952 76 GERMEDLEPFYPDRMAGRILG 96 (289)
Q Consensus 76 GQkVdDLe~f~p~~la~rlLG 96 (289)
||++|||++|+|++|+++|||
T Consensus 339 Ge~~~Dl~~f~~~~~~~~ll~ 359 (359)
T 2og2_A 339 GEAVEDLQPFDPEAFVNAIFS 359 (359)
T ss_dssp SSSGGGEEECCHHHHHHHHHC
T ss_pred CCChHhccCCCHHHHHHHHhC
Confidence 999999999999999999996
No 19
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=99.79 E-value=5.8e-20 Score=170.36 Aligned_cols=96 Identities=40% Similarity=0.699 Sum_probs=92.4
Q ss_pred hHHHHHHHHHhCCCeEEEEEeCcCcHHHHHHHHHhhhhcCCCeEEEecccCCCCCCccccceeccCCCeEEEecCCCCCC
Q 022952 2 MDELKDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGERMED 81 (289)
Q Consensus 2 m~ELk~i~~~~~P~ev~LVldAttgqda~~~a~~F~~~v~i~gvIlTKlDetargG~aLS~~~~t~~PI~FIgtGQkVdD 81 (289)
++||+++..+..|++++||+|+++|+++.++++.|++.+++.|+|+||+|+++++|.++++...+++||.|+|+||+|+|
T Consensus 201 ~~el~~i~~~~~~d~vllVvda~~g~~~~~~~~~~~~~~~i~gvVlnk~D~~~~~g~~~~~~~~~~~pi~~i~~Ge~v~d 280 (297)
T 1j8m_F 201 LEEMKNIYEAIKPDEVTLVIDASIGQKAYDLASKFNQASKIGTIIITKMDGTAKGGGALSAVAATGATIKFIGTGEKIDE 280 (297)
T ss_dssp HHHHHHHHHHHCCSEEEEEEEGGGGGGHHHHHHHHHHTCTTEEEEEECGGGCTTHHHHHHHHHTTTCCEEEEECSSSTTC
T ss_pred HHHHHHHHHHhcCCEEEEEeeCCchHHHHHHHHHHHhhCCCCEEEEeCCCCCcchHHHHHHHHHHCcCEEEEeCCCChhh
Confidence 67888888889999999999999999999999999988999999999999999999999999999999999999999999
Q ss_pred CCCCChhHHHHHhhCC
Q 022952 82 LEPFYPDRMAGRILGM 97 (289)
Q Consensus 82 Le~f~p~~la~rlLG~ 97 (289)
|++|+|++|+++||||
T Consensus 281 l~~f~~~~~~~~ll~~ 296 (297)
T 1j8m_F 281 LEVFNPRRFVARLHHH 296 (297)
T ss_dssp EEECCHHHHHHTTCTT
T ss_pred cccCCHHHHHHHHhCC
Confidence 9999999999999987
No 20
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=99.77 E-value=2e-19 Score=167.17 Aligned_cols=95 Identities=46% Similarity=0.774 Sum_probs=87.8
Q ss_pred hHHHHHHHHHh------CCCeEEEEEeCcCcHHHHHHHHHhhhhcCCCeEEEecccCCCCCCccccceeccCCCeEEEec
Q 022952 2 MDELKDVKRVL------NPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGR 75 (289)
Q Consensus 2 m~ELk~i~~~~------~P~ev~LVldAttgqda~~~a~~F~~~v~i~gvIlTKlDetargG~aLS~~~~t~~PI~FIgt 75 (289)
+.||.+...++ +|++++||+|+++|+|+.++++.|++..+++++|+||+|+++++|.++++++.++.||.|+|+
T Consensus 202 ~~eLSkqr~~iaral~~~P~e~lLvLDptsglD~~~~~~~~~~~~g~t~iiiThlD~~~~~g~~l~~~~~~~~pi~~i~~ 281 (302)
T 3b9q_A 202 MEELIACKKAVGKIVSGAPNEILLVLDGNTGLNMLPQAREFNEVVGITGLILTKLDGSARGGCVVSVVEELGIPVKFIGV 281 (302)
T ss_dssp HHHHHHHHHHHHTTSTTCCSEEEEEEEGGGGGGGHHHHHHHHHHTCCCEEEEECCSSCSCTHHHHHHHHHHCCCEEEEEC
T ss_pred HHHHHHHHHHHHHhhccCCCeeEEEEeCCCCcCHHHHHHHHHHhcCCCEEEEeCCCCCCccChheehHHHHCCCEEEEeC
Confidence 56777554443 599999999999999999999999987999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCChhHHHHHhhC
Q 022952 76 GERMEDLEPFYPDRMAGRILG 96 (289)
Q Consensus 76 GQkVdDLe~f~p~~la~rlLG 96 (289)
||+++||++|+|++|+++|||
T Consensus 282 Ge~~~dl~~f~~~~~~~~llg 302 (302)
T 3b9q_A 282 GEAVEDLQPFDPEAFVNAIFS 302 (302)
T ss_dssp SSSGGGEEECCHHHHHHHHHC
T ss_pred CCChhhcccCCHHHHHHHHhC
Confidence 999999999999999999996
No 21
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=99.69 E-value=8.3e-18 Score=155.64 Aligned_cols=94 Identities=20% Similarity=0.332 Sum_probs=84.4
Q ss_pred hHHHHHHHHHhCCCeEEEEEeCcCcH-HHHHHHHHhhhhcCCCeEEEecccCCCCCCccccceeccCCCeEEEecCCCC-
Q 022952 2 MDELKDVKRVLNPTEVLLVVDAMTGQ-EAAALVTTFNIEIGITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGERM- 79 (289)
Q Consensus 2 m~ELk~i~~~~~P~ev~LVldAttgq-da~~~a~~F~~~v~i~gvIlTKlDetargG~aLS~~~~t~~PI~FIgtGQkV- 79 (289)
|.||.++.....|++++||+|+++++ ++.++++.|.. ++++++|+||+|+++++|.++++...+++||.|+|+||+|
T Consensus 201 ~~el~~~l~~~~~~~~~lVl~at~~~~~~~~~~~~~~~-l~~~giVltk~D~~~~~g~~~~~~~~~~~pi~~i~~ge~vp 279 (296)
T 2px0_A 201 IDELKETIPFESSIQSFLVLSATAKYEDMKHIVKRFSS-VPVNQYIFTKIDETTSLGSVFNILAESKIGVGFMTNGQNVP 279 (296)
T ss_dssp HHHHHHHSCCCTTEEEEEEEETTBCHHHHHHHTTTTSS-SCCCEEEEECTTTCSCCHHHHHHHHTCSCCCSEECCSSCTT
T ss_pred HHHHHHHHhhcCCCeEEEEEECCCCHHHHHHHHHHHhc-CCCCEEEEeCCCcccchhHHHHHHHHHCcCEEEEECCCCCh
Confidence 45565555444689999999999997 67678888985 9999999999999999999999999999999999999999
Q ss_pred CCCCCCChhHHHHHhhC
Q 022952 80 EDLEPFYPDRMAGRILG 96 (289)
Q Consensus 80 dDLe~f~p~~la~rlLG 96 (289)
+||++|+|++|+++|||
T Consensus 280 ~dl~~f~~~~~~~~llg 296 (296)
T 2px0_A 280 EDIQTVSPLGFVRMLCR 296 (296)
T ss_dssp TSCBCCCHHHHHHHHTC
T ss_pred HHHhcCCHHHHHHHHcC
Confidence 99999999999999996
No 22
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=90.93 E-value=0.025 Score=52.41 Aligned_cols=70 Identities=10% Similarity=0.070 Sum_probs=43.3
Q ss_pred CCCeEEEEEeCcCcH--HHH---HHHHHhhhhc-C-CCeEEEecccCCCCCCc--cccceeccCCCeEEEe--cCCCCCC
Q 022952 13 NPTEVLLVVDAMTGQ--EAA---ALVTTFNIEI-G-ITGAILTKLDGDSRGGA--ALSVKEVSGKPIKLVG--RGERMED 81 (289)
Q Consensus 13 ~P~ev~LVldAttgq--da~---~~a~~F~~~v-~-i~gvIlTKlDetargG~--aLS~~~~t~~PI~FIg--tGQkVdD 81 (289)
..+.++||+|++..+ +.. .....+.... + +--+|+||+|......- +.......+.|+.+++ +|+.|++
T Consensus 246 ~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~~~piilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~iSA~~g~gi~~ 325 (357)
T 2e87_A 246 LGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFKDLPFLVVINKIDVADEENIKRLEKFVKEKGLNPIKISALKGTGIDL 325 (357)
T ss_dssp TCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTTTSCEEEEECCTTTCCHHHHHHHHHHHHHTTCCCEECBTTTTBTHHH
T ss_pred cCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcCCCCEEEEEECcccCChHHHHHHHHHHHhcCCCeEEEeCCCCcCHHH
Confidence 478899999987653 332 3333333312 1 22478899999765432 3333345678999998 7887655
Q ss_pred C
Q 022952 82 L 82 (289)
Q Consensus 82 L 82 (289)
|
T Consensus 326 l 326 (357)
T 2e87_A 326 V 326 (357)
T ss_dssp H
T ss_pred H
Confidence 3
No 23
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=85.68 E-value=0.37 Score=42.71 Aligned_cols=70 Identities=19% Similarity=0.263 Sum_probs=44.7
Q ss_pred hCCCeEEEEEeCcCcHHHHHHHHHhhhhcCCCeEEEecccCCCCCCcc---ccceeccCCCeEEEe--cCCCCCC
Q 022952 12 LNPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAA---LSVKEVSGKPIKLVG--RGERMED 81 (289)
Q Consensus 12 ~~P~ev~LVldAttgqda~~~a~~F~~~v~i~gvIlTKlDetargG~a---LS~~~~t~~PI~FIg--tGQkVdD 81 (289)
..++-+++|+|++.............+.--+--+|+||+|....-+-. -.+....++|+..++ +|+.|++
T Consensus 82 ~~~d~ii~V~D~t~~~~~~~~~~~l~~~~~pvilv~NK~Dl~~~~~i~~~~~~l~~~lg~~vi~~SA~~g~gi~e 156 (258)
T 3a1s_A 82 GDADLVILVADSVNPEQSLYLLLEILEMEKKVILAMTAIDEAKKTGMKIDRYELQKHLGIPVVFTSSVTGEGLEE 156 (258)
T ss_dssp SCCSEEEEEEETTSCHHHHHHHHHHHTTTCCEEEEEECHHHHHHTTCCBCHHHHHHHHCSCEEECCTTTCTTHHH
T ss_pred cCCCEEEEEeCCCchhhHHHHHHHHHhcCCCEEEEEECcCCCCccchHHHHHHHHHHcCCCEEEEEeeCCcCHHH
Confidence 478999999999988754444444433112347889999985543332 223455678887777 5555543
No 24
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=79.09 E-value=0.66 Score=41.06 Aligned_cols=70 Identities=13% Similarity=0.091 Sum_probs=45.7
Q ss_pred hCCCeEEEEEeCcCcHHHHHHHHHhhhhcCCCeEEEecccCCCCCCccc---cceeccCCCeEEEe--cCCCCCC
Q 022952 12 LNPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAAL---SVKEVSGKPIKLVG--RGERMED 81 (289)
Q Consensus 12 ~~P~ev~LVldAttgqda~~~a~~F~~~v~i~gvIlTKlDetargG~aL---S~~~~t~~PI~FIg--tGQkVdD 81 (289)
.+++-+++|+|++.-.........+.+.--+--+++||+|....-+-.. .+....++|+..++ +|+.|++
T Consensus 82 ~~~d~vi~VvDas~~~~~~~l~~~l~~~~~pvilv~NK~Dl~~~~~~~~~~~~l~~~lg~~vi~~SA~~g~gi~e 156 (256)
T 3iby_A 82 LEYDCIINVIDACHLERHLYLTSQLFELGKPVVVALNMMDIAEHRGISIDTEKLESLLGCSVIPIQAHKNIGIPA 156 (256)
T ss_dssp SCCSEEEEEEEGGGHHHHHHHHHHHTTSCSCEEEEEECHHHHHHTTCEECHHHHHHHHCSCEEECBGGGTBSHHH
T ss_pred CCCCEEEEEeeCCCchhHHHHHHHHHHcCCCEEEEEEChhcCCcCCcHHHHHHHHHHcCCCEEEEECCCCCCHHH
Confidence 5789999999999866444555555442224568899999865544322 23345678888876 5666544
No 25
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=73.42 E-value=1.7 Score=38.17 Aligned_cols=68 Identities=19% Similarity=0.142 Sum_probs=40.8
Q ss_pred hCCCeEEEEEeCcCcHHHHHHHHHhhhhc-CCCeEEEecccCCCCCCc---cccceeccCCCeEEEe--cCCCC
Q 022952 12 LNPTEVLLVVDAMTGQEAAALVTTFNIEI-GITGAILTKLDGDSRGGA---ALSVKEVSGKPIKLVG--RGERM 79 (289)
Q Consensus 12 ~~P~ev~LVldAttgqda~~~a~~F~~~v-~i~gvIlTKlDetargG~---aLS~~~~t~~PI~FIg--tGQkV 79 (289)
.+++-+++|+|++.+...........+.- .+--+|+||+|...+-+. .-.+....++|+..++ +|+.|
T Consensus 80 ~~~d~vi~v~D~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~l~~~lg~~~~~~Sa~~g~gi 153 (271)
T 3k53_A 80 GNADVIVDIVDSTCLMRNLFLTLELFEMEVKNIILVLNKFDLLKKKGAKIDIKKMRKELGVPVIPTNAKKGEGV 153 (271)
T ss_dssp TCCSEEEEEEEGGGHHHHHHHHHHHHHTTCCSEEEEEECHHHHHHHTCCCCHHHHHHHHSSCEEECBGGGTBTH
T ss_pred cCCcEEEEEecCCcchhhHHHHHHHHhcCCCCEEEEEEChhcCcccccHHHHHHHHHHcCCcEEEEEeCCCCCH
Confidence 46899999999999875444333333211 345688999996433222 2234455677876655 34444
No 26
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=72.94 E-value=3.6 Score=31.60 Aligned_cols=43 Identities=19% Similarity=0.142 Sum_probs=26.1
Q ss_pred CCCeEEEEEeCcCcH-HHHH-HHHHhhhhcCCCeEEEecccCCCC
Q 022952 13 NPTEVLLVVDAMTGQ-EAAA-LVTTFNIEIGITGAILTKLDGDSR 55 (289)
Q Consensus 13 ~P~ev~LVldAttgq-da~~-~a~~F~~~v~i~gvIlTKlDetar 55 (289)
..+-+++|+|++.+. .... ..+.....-.+--+|+||+|....
T Consensus 79 ~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 123 (161)
T 2dyk_A 79 DAEVVLFAVDGRAELTQADYEVAEYLRRKGKPVILVATKVDDPKH 123 (161)
T ss_dssp TCSEEEEEEESSSCCCHHHHHHHHHHHHHTCCEEEEEECCCSGGG
T ss_pred hCCEEEEEEECCCcccHhHHHHHHHHHhcCCCEEEEEECcccccc
Confidence 567899999999754 2222 222222211234789999998543
No 27
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=72.93 E-value=0.55 Score=37.65 Aligned_cols=63 Identities=17% Similarity=0.083 Sum_probs=34.7
Q ss_pred hCCCeEEEEEeCcCcHHHHHHHHHhhhhcCCCeEEEecccCCCCCC---ccccceeccCCCeEEEe
Q 022952 12 LNPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGG---AALSVKEVSGKPIKLVG 74 (289)
Q Consensus 12 ~~P~ev~LVldAttgqda~~~a~~F~~~v~i~gvIlTKlDetargG---~aLS~~~~t~~PI~FIg 74 (289)
..++-+++|+|++.-.............=.+--+|+||+|....-. .+-.+....+.|+..++
T Consensus 84 ~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~S 149 (188)
T 2wjg_A 84 EKPDLVVNIVDATALERNLYLTLQLMEMGANLLLALNKMDLAKSLGIEIDVDKLEKILGVKVVPLS 149 (188)
T ss_dssp HCCSEEEEEEEGGGHHHHHHHHHHHHTTTCCEEEEEECHHHHHHTTCCCCHHHHHHHHTSCEEECB
T ss_pred cCCCEEEEEecchhHHHHHHHHHHHHhcCCCEEEEEEhhhccccccchHHHHHHHHHhCCCeEEEE
Confidence 3578899999998765444443333321123357889999743211 11222333456655554
No 28
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=66.17 E-value=1.8 Score=38.73 Aligned_cols=68 Identities=19% Similarity=0.169 Sum_probs=41.4
Q ss_pred CCCeEEEEEeCcCcHHHHHHHHHhhhhcC-CCeEEEecccCCCCCCcc---ccceeccCCCeEEEe--cCCCCCC
Q 022952 13 NPTEVLLVVDAMTGQEAAALVTTFNIEIG-ITGAILTKLDGDSRGGAA---LSVKEVSGKPIKLVG--RGERMED 81 (289)
Q Consensus 13 ~P~ev~LVldAttgqda~~~a~~F~~~v~-i~gvIlTKlDetargG~a---LS~~~~t~~PI~FIg--tGQkVdD 81 (289)
.++-+++|+|++...........+.+ .+ +--++++|+|....-+-. -.+....++|+..++ +|+.|++
T Consensus 80 ~~d~vi~V~D~t~~e~~~~~~~~l~~-~~~p~ilv~NK~Dl~~~~~~~~~~~~l~~~lg~~vi~~SA~~g~gi~e 153 (272)
T 3b1v_A 80 RADSILNVVDATNLERNLYLTTQLIE-TGIPVTIALNMIDVLDGQGKKINVDKLSYHLGVPVVATSALKQTGVDQ 153 (272)
T ss_dssp CCSEEEEEEEGGGHHHHHHHHHHHHH-TCSCEEEEEECHHHHHHTTCCCCHHHHHHHHTSCEEECBTTTTBSHHH
T ss_pred CCCEEEEEecCCchHhHHHHHHHHHh-cCCCEEEEEEChhhCCcCCcHHHHHHHHHHcCCCEEEEEccCCCCHHH
Confidence 68999999999987644444444433 22 346778999985443321 123344577877665 3555543
No 29
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=58.78 E-value=6 Score=32.15 Aligned_cols=62 Identities=10% Similarity=0.062 Sum_probs=33.0
Q ss_pred CCCeEEEEEeCcCcHHHH---HHHHHhhhhc---CCCeEEEecccCCCCCC----ccccceeccCCCeEEEe
Q 022952 13 NPTEVLLVVDAMTGQEAA---ALVTTFNIEI---GITGAILTKLDGDSRGG----AALSVKEVSGKPIKLVG 74 (289)
Q Consensus 13 ~P~ev~LVldAttgqda~---~~a~~F~~~v---~i~gvIlTKlDetargG----~aLS~~~~t~~PI~FIg 74 (289)
..+-++||+|++...... .....+.... .+--+|+||+|....-- -+..+....+.|+.+++
T Consensus 80 ~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S 151 (206)
T 2bcg_Y 80 GSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLKDKRVVEYDVAKEFADANKMPFLETS 151 (206)
T ss_dssp TCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCCEEECC
T ss_pred CCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCeEEEEe
Confidence 457799999999875222 2223332211 12358899999854211 11122334556655544
No 30
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=58.64 E-value=2.2 Score=39.28 Aligned_cols=68 Identities=19% Similarity=0.248 Sum_probs=39.5
Q ss_pred CCCeEEEEEeCcCcHHHHHHHHHhhhhcCCCeEEEecccCCCCCCcc-----cc----cee----ccCCCeEEEe--cCC
Q 022952 13 NPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAA-----LS----VKE----VSGKPIKLVG--RGE 77 (289)
Q Consensus 13 ~P~ev~LVldAttgqda~~~a~~F~~~v~i~gvIlTKlDetargG~a-----LS----~~~----~t~~PI~FIg--tGQ 77 (289)
..|-+++|+|+..+.+...+.....+ . ..-+|+||+|....-+.. +. ... .++.||.+++ +|+
T Consensus 192 ~aD~vl~V~d~~~~~~~~~l~~~~~~-~-p~ivVlNK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~ 269 (355)
T 3p32_A 192 MVDTFVLLTLARTGDQLQGIKKGVLE-L-ADIVVVNKADGEHHKEARLAARELSAAIRLIYPREALWRPPVLTMSAVEGR 269 (355)
T ss_dssp TCSEEEEEEESSTTCTTTTCCTTSGG-G-CSEEEEECCCGGGHHHHHHHHHHHHHHHHHHSTTCCSCCCCEEEEBGGGTB
T ss_pred hCCEEEEEECCCCCccHHHHHHhHhh-c-CCEEEEECCCCcChhHHHHHHHHHHHHHhhccccccCCCCceEEEEcCCCC
Confidence 46789999998877533222111122 2 568999999986432221 10 000 2357888887 477
Q ss_pred CCCCC
Q 022952 78 RMEDL 82 (289)
Q Consensus 78 kVdDL 82 (289)
.|++|
T Consensus 270 Gi~~L 274 (355)
T 3p32_A 270 GLAEL 274 (355)
T ss_dssp SHHHH
T ss_pred CHHHH
Confidence 77654
No 31
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=57.99 E-value=6.7 Score=34.62 Aligned_cols=63 Identities=16% Similarity=-0.028 Sum_probs=39.2
Q ss_pred hCCCeEEEEEeCcCcHHHHHHHHHhhhhcCCCeEEEecccCCCCCCcc---ccceeccCCCeEEEe
Q 022952 12 LNPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAA---LSVKEVSGKPIKLVG 74 (289)
Q Consensus 12 ~~P~ev~LVldAttgqda~~~a~~F~~~v~i~gvIlTKlDetargG~a---LS~~~~t~~PI~FIg 74 (289)
-.++-+++|+|++...........+.+.=-+--+|+||+|....-+-- -.+....++|+.+++
T Consensus 84 ~~~d~ii~VvD~~~~~~~~~~~~~l~~~~~p~ivv~NK~Dl~~~~~~~~~~~~l~~~lg~~~i~~S 149 (274)
T 3i8s_A 84 GDADLLINVVDASNLERNLYLTLQLLELGIPCIVALNMLDIAEKQNIRIEIDALSARLGCPVIPLV 149 (274)
T ss_dssp TCCSEEEEEEEGGGHHHHHHHHHHHHHHTCCEEEEEECHHHHHHTTEEECHHHHHHHHTSCEEECC
T ss_pred cCCCEEEEEecCCChHHHHHHHHHHHhcCCCEEEEEECccchhhhhHHHHHHHHHHhcCCCEEEEE
Confidence 478999999999986644444444443112446789999985443321 122345677877765
No 32
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=57.69 E-value=9.7 Score=30.78 Aligned_cols=41 Identities=17% Similarity=0.101 Sum_probs=24.5
Q ss_pred CCCeEEEEEeCcCcHHH---HHHHHHhhhhc---CCCeEEEecccCC
Q 022952 13 NPTEVLLVVDAMTGQEA---AALVTTFNIEI---GITGAILTKLDGD 53 (289)
Q Consensus 13 ~P~ev~LVldAttgqda---~~~a~~F~~~v---~i~gvIlTKlDet 53 (289)
..+-++||+|++..... ......+.... .+--+|+||+|..
T Consensus 92 ~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~ 138 (213)
T 3cph_A 92 GAMGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDME 138 (213)
T ss_dssp TCSEEEEEEETTCHHHHHTHHHHHHHHHHHTTTCSEEEEEEECTTCS
T ss_pred cCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCc
Confidence 46789999999877521 22222222211 1235889999974
No 33
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=57.08 E-value=3.1 Score=38.41 Aligned_cols=77 Identities=22% Similarity=0.234 Sum_probs=48.5
Q ss_pred hCCCeEEEEEeCcCcHHHHHHHHHhh-----hhcCCCeEEEecccCCCCCC------ccccceeccCCCeEEEe--cCCC
Q 022952 12 LNPTEVLLVVDAMTGQEAAALVTTFN-----IEIGITGAILTKLDGDSRGG------AALSVKEVSGKPIKLVG--RGER 78 (289)
Q Consensus 12 ~~P~ev~LVldAttgqda~~~a~~F~-----~~v~i~gvIlTKlDetargG------~aLS~~~~t~~PI~FIg--tGQk 78 (289)
.+-|.+++|+|+....-..+.+++|- ...++ -+||||.|....-- .+...-...+.|+.++. +|+.
T Consensus 85 anvD~v~~V~~~~~p~~~~~~i~r~L~~~~~~~~~~-vivlnK~DL~~~~~~~~~~~~~~~~y~~~g~~v~~~sa~~~~g 163 (307)
T 1t9h_A 85 CNVDQAVLVFSAVQPSFSTALLDRFLVLVEANDIQP-IICITKMDLIEDQDTEDTIQAYAEDYRNIGYDVYLTSSKDQDS 163 (307)
T ss_dssp ECCCEEEEEEESTTTTCCHHHHHHHHHHHHTTTCEE-EEEEECGGGCCCHHHHHHHHHHHHHHHHHTCCEEECCHHHHTT
T ss_pred HhCCEEEEEEeCCCCCCCHHHHHHHHHHHHHCCCCE-EEEEECCccCchhhhHHHHHHHHHHHHhCCCeEEEEecCCCCC
Confidence 46688999999986541112344443 22333 68999999865422 22222234588999986 6888
Q ss_pred CCCCCCCChhH
Q 022952 79 MEDLEPFYPDR 89 (289)
Q Consensus 79 VdDLe~f~p~~ 89 (289)
+++|..+.+..
T Consensus 164 ~~~L~~~~~G~ 174 (307)
T 1t9h_A 164 LADIIPHFQDK 174 (307)
T ss_dssp CTTTGGGGTTS
T ss_pred HHHHHhhcCCC
Confidence 88877766543
No 34
>3iwf_A Transcription regulator RPIR family; transcriptional, N-terminal, PSI, MCSG, structural genomics, midwest center structural genomics; 1.40A {Staphylococcus epidermidis}
Probab=56.91 E-value=7.6 Score=30.38 Aligned_cols=55 Identities=13% Similarity=0.296 Sum_probs=42.1
Q ss_pred HHHHHHHHhCCCHHhhc-------CccccCCCchhhHHhhccCCCCHHHHHHHHHH-----HHHHHHHH
Q 022952 171 LKIMEAMIEAMTPEERE-------KPELLAESPVRRKRVAQDSGKTEQQVSQLVAQ-----LFQMRVRM 227 (289)
Q Consensus 171 ~k~~~~Ii~SMT~~Er~-------nP~li~~~~SR~~RIA~GSG~~~~eVn~Llk~-----f~~m~kmm 227 (289)
+.++....+++|+.|+. ||+-+.. .-+..+|+-+|+++.-|.++.+. |..++..+
T Consensus 5 ~~~I~~~~~~lt~~e~~ia~yil~~~~~~~~--~si~elA~~~~vS~aTv~Rf~kkLGf~gf~efk~~l 71 (107)
T 3iwf_A 5 LYKIDNQYPYFTKNEKKIAQFILNYPHKVVN--MTSQEIANQLETSSTSIIRLSKKVTPGGFNELKTRL 71 (107)
T ss_dssp HHHHHHHGGGSCHHHHHHHHHHHHCHHHHTT--CCHHHHHHHHTSCHHHHHHHHHHHSTTHHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHhCHHHHHH--CCHHHHHHHHCCCHHHHHHHHHHhCCCCHHHHHHHH
Confidence 45777788899999984 8865532 45899999999999999999876 55554433
No 35
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=56.44 E-value=4.1 Score=32.67 Aligned_cols=43 Identities=21% Similarity=0.236 Sum_probs=26.6
Q ss_pred HhCCCeEEEEEeCcCcH--HHHHHHHHhhhhc---CCCeEEEecccCC
Q 022952 11 VLNPTEVLLVVDAMTGQ--EAAALVTTFNIEI---GITGAILTKLDGD 53 (289)
Q Consensus 11 ~~~P~ev~LVldAttgq--da~~~a~~F~~~v---~i~gvIlTKlDet 53 (289)
....+-+++|+|++... +.......+.... -+--+|+||+|..
T Consensus 81 ~~~ad~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~ 128 (172)
T 2gj8_A 81 IEQADRVLFMVDGTTTDAVDPAEIWPEFIARLPAKLPITVVRNKADIT 128 (172)
T ss_dssp HHTCSEEEEEEETTTCCCCSHHHHCHHHHHHSCTTCCEEEEEECHHHH
T ss_pred HHhCCEEEEEEECCCCCCHHHHHHHHHHHHhcccCCCEEEEEECccCC
Confidence 34678899999998764 2223333333211 1246889999974
No 36
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=54.06 E-value=15 Score=29.95 Aligned_cols=68 Identities=12% Similarity=0.109 Sum_probs=35.4
Q ss_pred CCCeEEEEEeCcCcHHHH---HHHHHhhhhc---CCCeEEEecccCCCCCCc----cccceeccCCCeEEEec--CCCCC
Q 022952 13 NPTEVLLVVDAMTGQEAA---ALVTTFNIEI---GITGAILTKLDGDSRGGA----ALSVKEVSGKPIKLVGR--GERME 80 (289)
Q Consensus 13 ~P~ev~LVldAttgqda~---~~a~~F~~~v---~i~gvIlTKlDetargG~----aLS~~~~t~~PI~FIgt--GQkVd 80 (289)
..+-++||+|++.+.... .....+.... -+--+|+||+|....--- +.......+.|+..++. |+.|+
T Consensus 84 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~ 163 (218)
T 4djt_A 84 GASGAILFFDVTSRITCQNLARWVKEFQAVVGNEAPIVVCANKIDIKNRQKISKKLVMEVLKGKNYEYFEISAKTAHNFG 163 (218)
T ss_dssp TCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCSSSCEEEEEECTTCC----CCHHHHHHHTTTCCCEEEEEBTTTTBTTT
T ss_pred cCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCcEEEEecCCCCCHH
Confidence 468899999999886222 2223332211 233578999997543111 12233345566555553 44443
No 37
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=50.70 E-value=14 Score=33.65 Aligned_cols=51 Identities=20% Similarity=0.270 Sum_probs=35.3
Q ss_pred hCCCeEEEEEeCcC----cHHHHHHHHHhhhhcCCCeEEEecccCCCCCCccccc
Q 022952 12 LNPTEVLLVVDAMT----GQEAAALVTTFNIEIGITGAILTKLDGDSRGGAALSV 62 (289)
Q Consensus 12 ~~P~ev~LVldAtt----gqda~~~a~~F~~~v~i~gvIlTKlDetargG~aLS~ 62 (289)
.+|+-++||+|++. .++....++.+...-...-+|+||+|.-.........
T Consensus 171 ~~~d~iilvv~~~~~~~~~~~~~~l~~~~~~~~~~~i~V~nK~Dl~~~~~~~~~~ 225 (360)
T 3t34_A 171 EKPNCIILAISPANQDLATSDAIKISREVDPSGDRTFGVLTKIDLMDKGTDAVEI 225 (360)
T ss_dssp HSSSEEEEEEEETTSCGGGCHHHHHHHHSCTTCTTEEEEEECGGGCCTTCCSHHH
T ss_pred hcCCeEEEEeecccCCcCCHHHHHHHHHhcccCCCEEEEEeCCccCCCcccHHHH
Confidence 36888999998643 2356777777765333577899999987766555443
No 38
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=49.98 E-value=8.6 Score=40.10 Aligned_cols=70 Identities=21% Similarity=0.150 Sum_probs=43.6
Q ss_pred CCCeEEEEEeCcCc---HHHHHHHHHhhhhcCCCeEEEecccCCCCCCccccceecc------C-CCeEEEe--cCCCCC
Q 022952 13 NPTEVLLVVDAMTG---QEAAALVTTFNIEIGITGAILTKLDGDSRGGAALSVKEVS------G-KPIKLVG--RGERME 80 (289)
Q Consensus 13 ~P~ev~LVldAttg---qda~~~a~~F~~~v~i~gvIlTKlDetargG~aLS~~~~t------~-~PI~FIg--tGQkVd 80 (289)
..+-+++|+||+.+ +|...+++.....-...-+|+||+|.-.++..+..+.... + .||.+++ +|+.++
T Consensus 187 ~aDlIL~VVDAs~~~~~~d~l~ll~~L~~~g~pvIlVlNKiDlv~~~~~~~~il~~~~~~l~lg~~~VV~iSA~~G~Gvd 266 (772)
T 3zvr_A 187 ENCLILAVSPANSDLANSDALKIAKEVDPQGQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKK 266 (772)
T ss_dssp TTEEEEEEEETTSCSSSCHHHHHHHHHCTTCSSEEEEEECTTSSCTTCCSHHHHTTCSSCCSSCEEECCCCCCEESSSSE
T ss_pred CCcEEEEEEcCCCCcchhHHHHHHHHHHhcCCCEEEEEeCcccCCcchhhHHHHHHHhhhhhccCCceEEecccccccch
Confidence 34678999999875 3665677777653345678999999977665443322211 1 1333443 677776
Q ss_pred CC
Q 022952 81 DL 82 (289)
Q Consensus 81 DL 82 (289)
+|
T Consensus 267 eL 268 (772)
T 3zvr_A 267 DI 268 (772)
T ss_dssp EH
T ss_pred hH
Confidence 65
No 39
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=49.78 E-value=15 Score=34.82 Aligned_cols=42 Identities=17% Similarity=0.159 Sum_probs=25.6
Q ss_pred hCCCeEEEEEeCcCcH--HHHHHHHHhhhhcC-CCeEEEecccCCC
Q 022952 12 LNPTEVLLVVDAMTGQ--EAAALVTTFNIEIG-ITGAILTKLDGDS 54 (289)
Q Consensus 12 ~~P~ev~LVldAttgq--da~~~a~~F~~~v~-i~gvIlTKlDeta 54 (289)
-..+-++||+|++.+. ....++..... .+ .--+|+||+|...
T Consensus 276 ~~ad~~llviD~~~~~~~~~~~~~~~~~~-~~~~~ilv~NK~Dl~~ 320 (456)
T 4dcu_A 276 DRSEVVAVVLDGEEGIIEQDKRIAGYAHE-AGKAVVIVVNKWDAVD 320 (456)
T ss_dssp HHCSEEEEEEETTTCCCHHHHHHHHHHHH-TTCEEEEEEECGGGSC
T ss_pred hhCCEEEEEEeCCCCcCHHHHHHHHHHHH-cCCCEEEEEEChhcCC
Confidence 3568899999999864 22223332222 22 2357899999754
No 40
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=49.10 E-value=27 Score=27.06 Aligned_cols=41 Identities=20% Similarity=0.154 Sum_probs=24.9
Q ss_pred CCeEEEEEeCcCcH--HHHHHHHHhhhhcCCCeEEEecccCCC
Q 022952 14 PTEVLLVVDAMTGQ--EAAALVTTFNIEIGITGAILTKLDGDS 54 (289)
Q Consensus 14 P~ev~LVldAttgq--da~~~a~~F~~~v~i~gvIlTKlDeta 54 (289)
.+-++||+|++.+. +..+.+......--+--+|+||+|...
T Consensus 79 ~d~~i~v~d~~~~~~~~~~~~l~~~~~~~~p~ilv~nK~Dl~~ 121 (178)
T 2lkc_A 79 TDIVILVVAADDGVMPQTVEAINHAKAANVPIIVAINKMDKPE 121 (178)
T ss_dssp CCEEEEEEETTCCCCHHHHHHHHHHGGGSCCEEEEEETTTSSC
T ss_pred CCEEEEEEECCCCCcHHHHHHHHHHHhCCCCEEEEEECccCCc
Confidence 46689999988752 444444444321123467788888643
No 41
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=48.86 E-value=10 Score=29.86 Aligned_cols=62 Identities=8% Similarity=-0.086 Sum_probs=34.0
Q ss_pred CCCeEEEEEeCcCcHH---HHHHHHHhhhh---cC-CCeEEEecccCCCCCC----ccccceeccCCCeEEEe
Q 022952 13 NPTEVLLVVDAMTGQE---AAALVTTFNIE---IG-ITGAILTKLDGDSRGG----AALSVKEVSGKPIKLVG 74 (289)
Q Consensus 13 ~P~ev~LVldAttgqd---a~~~a~~F~~~---v~-i~gvIlTKlDetargG----~aLS~~~~t~~PI~FIg 74 (289)
..+-++||+|++.... +......+... -+ +--+|+||+|....-. -+.......+.|+..++
T Consensus 89 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~S 161 (183)
T 3kkq_A 89 TGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQGKEMATKYNIPYIETS 161 (183)
T ss_dssp HCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTSSCCCEEEEEECTTCSTTCCSCHHHHHHHHHHHTCCEEEEB
T ss_pred cCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCCchhccCcCHHHHHHHHHHhCCeEEEec
Confidence 3678999999998742 22222222110 11 2358899999643111 12334455677766665
No 42
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=47.98 E-value=16 Score=35.26 Aligned_cols=70 Identities=10% Similarity=0.154 Sum_probs=40.8
Q ss_pred CCCeEEEEEeCcCcHHHHH---HHHHhhhhcCCCeEEEecccCCCCCCc----cccceeccCCCeEEEe--cCCCCCCCC
Q 022952 13 NPTEVLLVVDAMTGQEAAA---LVTTFNIEIGITGAILTKLDGDSRGGA----ALSVKEVSGKPIKLVG--RGERMEDLE 83 (289)
Q Consensus 13 ~P~ev~LVldAttgqda~~---~a~~F~~~v~i~gvIlTKlDetargG~----aLS~~~~t~~PI~FIg--tGQkVdDLe 83 (289)
..+-+++|+|++...+... .+..+....+ --+|+||+|....-.- +-......+.|+..++ +|+.|++|-
T Consensus 121 ~~d~ii~V~D~s~~~~~~~~~~~l~~~~~~~p-vilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~vSA~~g~gi~eL~ 199 (535)
T 3dpu_A 121 RSSVYMLLLDSRTDSNKHYWLRHIEKYGGKSP-VIVVMNKIDENPSYNIEQKKINERFPAIENRFHRISCKNGDGVESIA 199 (535)
T ss_dssp SSEEEEEEECGGGGGGHHHHHHHHHHHSSSCC-EEEEECCTTTCTTCCCCHHHHHHHCGGGTTCEEECCC-----CTTHH
T ss_pred CCcEEEEEEeCCCchhHHHHHHHHHHhCCCCC-EEEEEECCCcccccccCHHHHHHHHHhcCCceEEEecCcccCHHHHH
Confidence 4678999999998764443 4444443233 4689999998654331 2223344566766654 678887653
No 43
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=47.63 E-value=21 Score=34.15 Aligned_cols=70 Identities=14% Similarity=0.075 Sum_probs=40.0
Q ss_pred CCCeEEEEEeCcCcHHHHHHHHHhhhhcCCCeEEEecccCCCCCCc--cccceeccCCCeEEEe--cCCCCCCC
Q 022952 13 NPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGA--ALSVKEVSGKPIKLVG--RGERMEDL 82 (289)
Q Consensus 13 ~P~ev~LVldAttgqda~~~a~~F~~~v~i~gvIlTKlDetargG~--aLS~~~~t~~PI~FIg--tGQkVdDL 82 (289)
..+-++||+|+............+.+.=-+--+|+||+|....--. +-.+....+.|+.+++ +|+.|++|
T Consensus 113 ~aD~vllVvD~~~~~~~~~~l~~l~~~~~piIvV~NK~Dl~~~~~~~~~~~l~~~~g~~v~~vSAktg~gI~eL 186 (423)
T 3qq5_A 113 RADCGILVTDSAPTPYEDDVVNLFKEMEIPFVVVVNKIDVLGEKAEELKGLYESRYEAKVLLVSALQKKGFDDI 186 (423)
T ss_dssp SCSEEEEECSSSCCHHHHHHHHHHHHTTCCEEEECCCCTTTTCCCTHHHHHSSCCTTCCCCCCSSCCTTSTTTH
T ss_pred cCCEEEEEEeCCChHHHHHHHHHHHhcCCCEEEEEeCcCCCCccHHHHHHHHHHHcCCCEEEEECCCCCCHHHH
Confidence 5688999999955543334444444311234678899997543321 1123334566766655 56666654
No 44
>2o3f_A Putative HTH-type transcriptional regulator YBBH; APC85504, putative transcriptional regulator YBBH; HET: MLY; 1.75A {Bacillus subtilis} SCOP: a.4.1.20
Probab=46.88 E-value=11 Score=29.47 Aligned_cols=46 Identities=20% Similarity=0.377 Sum_probs=36.0
Q ss_pred HHHHHHHhCCCHHhhc-------CccccCCCchhhHHhhccCCCCHHHHHHHHHH
Q 022952 172 KIMEAMIEAMTPEERE-------KPELLAESPVRRKRVAQDSGKTEQQVSQLVAQ 219 (289)
Q Consensus 172 k~~~~Ii~SMT~~Er~-------nP~li~~~~SR~~RIA~GSG~~~~eVn~Llk~ 219 (289)
.++....+++|+.|+. ||+-+.. --+..||+-+|+++.-|.++.+.
T Consensus 10 ~~i~~~~~~ls~~e~~ia~yil~~~~~~~~--~si~elA~~~~vS~aTv~Rf~kk 62 (111)
T 2o3f_A 10 AIIQSMXHXLPPSERKLADYILAHPHXAIE--STVNEISALANSSDAAVIRLCXS 62 (111)
T ss_dssp HHHHHHGGGSCHHHHHHHHHHHHCHHHHHT--CCHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHhccCCHHHHHHHHHHHHChHHHHh--cCHHHHHHHHCCCHHHHHHHHHH
Confidence 4566677889998884 8865432 35899999999999999999865
No 45
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=46.45 E-value=2.5 Score=38.25 Aligned_cols=94 Identities=14% Similarity=0.213 Sum_probs=50.0
Q ss_pred CCCeEEEEEeCcCcH---HHHH-HHHHhh-hhcCCCeEEEecccCCCCC-----CccccceeccCCCeEEEe--cCCCCC
Q 022952 13 NPTEVLLVVDAMTGQ---EAAA-LVTTFN-IEIGITGAILTKLDGDSRG-----GAALSVKEVSGKPIKLVG--RGERME 80 (289)
Q Consensus 13 ~P~ev~LVldAttgq---da~~-~a~~F~-~~v~i~gvIlTKlDetarg-----G~aLS~~~~t~~PI~FIg--tGQkVd 80 (289)
+-|-+++|+|++... +.++ ...... ..++ --+|+||+|....- -.+.......+.|+.+++ +|+.++
T Consensus 79 naD~vliV~d~~~p~~s~~~l~~~l~~~~~~~~~-~ilV~NK~DL~~~~~v~~~~~~~~~~~~~g~~~~~~SA~~g~gi~ 157 (302)
T 2yv5_A 79 NVDRVIIVETLKMPEFNNYLLDNMLVVYEYFKVE-PVIVFNKIDLLNEEEKKELERWISIYRDAGYDVLKVSAKTGEGID 157 (302)
T ss_dssp SCCEEEEEECSTTTTCCHHHHHHHHHHHHHTTCE-EEEEECCGGGCCHHHHHHHHHHHHHHHHTTCEEEECCTTTCTTHH
T ss_pred hcCEEEEEEECCCCCCCHHHHHHHHHHHHhCCCC-EEEEEEcccCCCccccHHHHHHHHHHHHCCCeEEEEECCCCCCHH
Confidence 558899999998543 2222 111111 1133 36889999975431 112233334577877776 677777
Q ss_pred CCCCCChhHHHHHhhCCCc--hhHHHHHHH
Q 022952 81 DLEPFYPDRMAGRILGMGD--VLSFVEKAQ 108 (289)
Q Consensus 81 DLe~f~p~~la~rlLG~gD--i~sLvEk~~ 108 (289)
+|...-+..++ -|+|..- =.+|+..+.
T Consensus 158 ~L~~~l~G~i~-~l~G~sG~GKSTLln~l~ 186 (302)
T 2yv5_A 158 ELVDYLEGFIC-ILAGPSGVGKSSILSRLT 186 (302)
T ss_dssp HHHHHTTTCEE-EEECSTTSSHHHHHHHHH
T ss_pred HHHhhccCcEE-EEECCCCCCHHHHHHHHH
Confidence 66544333222 2444421 245666555
No 46
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=46.25 E-value=38 Score=26.36 Aligned_cols=42 Identities=21% Similarity=0.053 Sum_probs=26.5
Q ss_pred hCCCeEEEEEeCcCcHHHHHHHHHhhhhcCCCeEEEecccCC
Q 022952 12 LNPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGD 53 (289)
Q Consensus 12 ~~P~ev~LVldAttgqda~~~a~~F~~~v~i~gvIlTKlDet 53 (289)
..++-+++|+|++...........+.+.=-+--+|.||+|..
T Consensus 80 ~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~ 121 (165)
T 2wji_A 80 EKPDLVVNIVDATALERNLYLTLQLMEMGANLLLALNKMDLA 121 (165)
T ss_dssp HCCSEEEEEEETTCHHHHHHHHHHHHHTTCCEEEEEECHHHH
T ss_pred CCCCEEEEEecCCchhHhHHHHHHHHhcCCCEEEEEEchHhc
Confidence 478999999999886544433333332112235778999963
No 47
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=44.60 E-value=20 Score=29.30 Aligned_cols=38 Identities=11% Similarity=0.127 Sum_probs=25.3
Q ss_pred CCCeEEEEEeCcCcHHHH-HHHHHhhhhcCCCeEEEecccCC
Q 022952 13 NPTEVLLVVDAMTGQEAA-ALVTTFNIEIGITGAILTKLDGD 53 (289)
Q Consensus 13 ~P~ev~LVldAttgqda~-~~a~~F~~~v~i~gvIlTKlDet 53 (289)
.++.+++|+|++.+.+.. .....+. -..-+|+||+|..
T Consensus 129 ~~~~~i~vvd~~~~~~~~~~~~~~~~---~~~iiv~NK~Dl~ 167 (221)
T 2wsm_A 129 GENYRVVMVSVTEGDDVVEKHPEIFR---VADLIVINKVALA 167 (221)
T ss_dssp SCSEEEEEEEGGGCTTHHHHCHHHHH---TCSEEEEECGGGH
T ss_pred ccCcEEEEEeCCCcchhhhhhhhhhh---cCCEEEEecccCC
Confidence 356788999999886322 2233332 2467999999974
No 48
>3of5_A Dethiobiotin synthetase; structural genomics, center for structural genomics of infec diseases, csgid, ligase; 1.52A {Francisella tularensis subsp}
Probab=41.47 E-value=33 Score=29.63 Aligned_cols=57 Identities=21% Similarity=0.247 Sum_probs=36.6
Q ss_pred CeEEEEEeCcCcH--HHHHHHHHh-hhhcCCCeEEEecccCCCC-CCccccc-eeccCCCeE
Q 022952 15 TEVLLVVDAMTGQ--EAAALVTTF-NIEIGITGAILTKLDGDSR-GGAALSV-KEVSGKPIK 71 (289)
Q Consensus 15 ~ev~LVldAttgq--da~~~a~~F-~~~v~i~gvIlTKlDetar-gG~aLS~-~~~t~~PI~ 71 (289)
..++||+++..+. ++...++.+ ...+++-|+|++++|.+.. ....+.. ...++.|+.
T Consensus 141 ~pviLV~~~~~~~i~~~~~~~~~l~~~~~~i~GvIlN~~~~~~~~~~~~~~~l~~~~g~pvL 202 (228)
T 3of5_A 141 IPVLLVSAIKVGCINHTLLTINELNRHNIKLAGWIANCNDSNIKYIDEQINTIEELSGYKCS 202 (228)
T ss_dssp CCEEEEEECSTTHHHHHHHHHHHHHHTTCCEEEEEEEECCTTCSCHHHHHHHHHHHHSCCCS
T ss_pred CCEEEEEcCCcchHHHHHHHHHHHHhCCCcEEEEEEECcCCcchhhHHHHHHHHHhhCCCEE
Confidence 4589999999886 444444433 3457788999999988643 2222332 334677764
No 49
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=41.35 E-value=14 Score=29.35 Aligned_cols=12 Identities=17% Similarity=0.398 Sum_probs=10.0
Q ss_pred CCeEEEEEeCcC
Q 022952 14 PTEVLLVVDAMT 25 (289)
Q Consensus 14 P~ev~LVldAtt 25 (289)
.+-++||+|++.
T Consensus 119 ~~~~i~v~d~~~ 130 (193)
T 2ged_A 119 VKGLIFMVDSTV 130 (193)
T ss_dssp EEEEEEEEETTC
T ss_pred CCEEEEEEECCC
Confidence 478999999993
No 50
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=40.61 E-value=27 Score=30.54 Aligned_cols=49 Identities=24% Similarity=0.284 Sum_probs=30.1
Q ss_pred CCCeEEEEEeC-cCc---HHHHHHHHHhhhhcCCCeEEEecccCCCCCCcccc
Q 022952 13 NPTEVLLVVDA-MTG---QEAAALVTTFNIEIGITGAILTKLDGDSRGGAALS 61 (289)
Q Consensus 13 ~P~ev~LVldA-ttg---qda~~~a~~F~~~v~i~gvIlTKlDetargG~aLS 61 (289)
..+-++||+|+ +.+ ++...+++.+...-...-+|+||+|.......++.
T Consensus 167 ~~d~iilvvd~~~~~~~~~~~~~i~~~~~~~~~~~i~v~NK~Dl~~~~~~~~~ 219 (315)
T 1jwy_B 167 KQNAIIVAVTPANTDLANSDALQLAKEVDPEGKRTIGVITKLDLMDKGTDAME 219 (315)
T ss_dssp STTEEEEEEEESSSCSTTCSHHHHHHHHCSSCSSEEEEEECTTSSCSSCCCHH
T ss_pred CCCeEEEEEEecCcchhhhHHHHHHHHhCCCCCcEEEEEcCcccCCcchHHHH
Confidence 56779999997 333 23345566555422345679999998655443333
No 51
>1wjk_A C330018D20RIK protein; glutaredoxin, thioredoxin fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: c.47.1.1
Probab=40.21 E-value=19 Score=26.78 Aligned_cols=78 Identities=9% Similarity=0.053 Sum_probs=46.2
Q ss_pred CCeEEEEEeCcCcHHHHHHHHHhhhhcCCCeEEEecccCCCCCCccccceeccCCCeEEEecCCCCCCCCCCChhHHHHH
Q 022952 14 PTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGR 93 (289)
Q Consensus 14 P~ev~LVldAttgqda~~~a~~F~~~v~i~gvIlTKlDetargG~aLS~~~~t~~PI~FIgtGQkVdDLe~f~p~~la~r 93 (289)
..-++.+..+..-..+..+...+.+ +. .++-++++|-+..-...+...+....|+.|+ .|+.+ .+..|+++.+...
T Consensus 15 ~~~~v~~f~~~~C~~C~~~~~~L~~-l~-~~i~~~~vdi~~~~~~el~~~~g~~vP~l~~-~g~~~-~~~g~~~~~l~~~ 90 (100)
T 1wjk_A 15 ALPVLTLFTKAPCPLCDEAKEVLQP-YK-DRFILQEVDITLPENSTWYERYKFDIPVFHL-NGQFL-MMHRVNTSKLEKQ 90 (100)
T ss_dssp CCCEEEEEECSSCHHHHHHHHHTST-TS-SSSEEEEEETTSSTTHHHHHHSSSSCSEEEE-SSSEE-EESSCCHHHHHHH
T ss_pred CCCEEEEEeCCCCcchHHHHHHHHH-hh-hCCeEEEEECCCcchHHHHHHHCCCCCEEEE-CCEEE-EecCCCHHHHHHH
Confidence 3345566666665666655555553 32 2377888887622223343333378999876 57764 4566888877665
Q ss_pred hh
Q 022952 94 IL 95 (289)
Q Consensus 94 lL 95 (289)
|-
T Consensus 91 l~ 92 (100)
T 1wjk_A 91 LR 92 (100)
T ss_dssp HH
T ss_pred HH
Confidence 53
No 52
>2qzs_A Glycogen synthase; glycosyl-transferase, GT-B fold, rossmann fold, closed-form, ADP and glucose binding, glycogen biosynthesis; HET: GLC ADP 250; 2.20A {Escherichia coli} PDB: 2r4t_A* 2r4u_A* 3guh_A* 3cx4_A* 3cop_A* 3d1j_A
Probab=39.42 E-value=1.1e+02 Score=27.81 Aligned_cols=97 Identities=10% Similarity=0.072 Sum_probs=59.6
Q ss_pred CeEEEecccCCCCCCccccceeccCCCeEEEecCCCCCCCCCCChhH-----HHHHhhCCCchhHHHHHHHHhc----cH
Q 022952 43 TGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGERMEDLEPFYPDR-----MAGRILGMGDVLSFVEKAQEVM----QQ 113 (289)
Q Consensus 43 ~gvIlTKlDetargG~aLS~~~~t~~PI~FIgtGQkVdDLe~f~p~~-----la~rlLG~gDi~sLvEk~~~~~----~~ 113 (289)
|-+|++=.. ...|.++-=+...|+||.-..+|---|-++..+++. -...+...+|...|.+.+...+ ++
T Consensus 368 dv~v~pS~~--E~~g~~~lEAma~G~PvI~s~~gg~~e~v~~~~~~~~~~~~~~G~l~~~~d~~~la~~i~~ll~~~~~~ 445 (485)
T 2qzs_A 368 DVILVPSRF--EPCGLTQLYGLKYGTLPLVRRTGGLADTVSDCSLENLADGVASGFVFEDSNAWSLLRAIRRAFVLWSRP 445 (485)
T ss_dssp SEEEECCSC--CSSCSHHHHHHHHTCEEEEESSHHHHHHCCBCCHHHHHTTCCCBEEECSSSHHHHHHHHHHHHHHHTSH
T ss_pred CEEEECCcc--CCCcHHHHHHHHCCCCEEECCCCCccceeccCccccccccccceEEECCCCHHHHHHHHHHHHHHcCCH
Confidence 345554332 245555555677899998765542112122211110 1234555679999999998886 55
Q ss_pred HHHHHHHHHHHhCCcChHHHHHHHHHHH
Q 022952 114 EDAEEMQKKIMSANFDFNDFLKQTRTVA 141 (289)
Q Consensus 114 ~~~~~~~~k~~~g~F~l~Df~~Q~~~i~ 141 (289)
+..+++.++-....|+.+.+.+++..+-
T Consensus 446 ~~~~~~~~~~~~~~fs~~~~~~~~~~ly 473 (485)
T 2qzs_A 446 SLWRFVQRQAMAMDFSWQVAAKSYRELY 473 (485)
T ss_dssp HHHHHHHHHHHHCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcCCHHHHHHHHHHHH
Confidence 5566666666667899999999887764
No 53
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=39.41 E-value=31 Score=27.23 Aligned_cols=40 Identities=18% Similarity=0.041 Sum_probs=23.9
Q ss_pred CeEEEEEeCcCcH--HHHHHHHHhhhhcCCCeEEEecccCCC
Q 022952 15 TEVLLVVDAMTGQ--EAAALVTTFNIEIGITGAILTKLDGDS 54 (289)
Q Consensus 15 ~ev~LVldAttgq--da~~~a~~F~~~v~i~gvIlTKlDeta 54 (289)
+-+++|+|++.+. ......+.....--+--+|+||+|...
T Consensus 107 ~~~i~v~d~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~ 148 (195)
T 1svi_A 107 KAVVQIVDLRHAPSNDDVQMYEFLKYYGIPVIVIATKADKIP 148 (195)
T ss_dssp EEEEEEEETTSCCCHHHHHHHHHHHHTTCCEEEEEECGGGSC
T ss_pred CEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEECcccCC
Confidence 6799999998764 222223333221124567889999743
No 54
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=39.10 E-value=44 Score=25.69 Aligned_cols=41 Identities=15% Similarity=0.097 Sum_probs=25.1
Q ss_pred CCCeEEEEEeCcCcHHHH---HHHHHhhhhc--CCCeEEEecccCC
Q 022952 13 NPTEVLLVVDAMTGQEAA---ALVTTFNIEI--GITGAILTKLDGD 53 (289)
Q Consensus 13 ~P~ev~LVldAttgqda~---~~a~~F~~~v--~i~gvIlTKlDet 53 (289)
..+-++||+|++...... .....+.... .+--+|+||+|..
T Consensus 81 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~ 126 (181)
T 3tw8_B 81 GTHGVIVVYDVTSAESFVNVKRWLHEINQNCDDVCRILVGNKNDDP 126 (181)
T ss_dssp TCSEEEEEEETTCHHHHHHHHHHHHHHHHHCTTSEEEEEEECTTCG
T ss_pred cCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEECCCCc
Confidence 457899999999876322 2333333322 1225788999953
No 55
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=38.50 E-value=35 Score=27.73 Aligned_cols=40 Identities=20% Similarity=0.115 Sum_probs=23.6
Q ss_pred CCeEEEEEeCcCcH--HHHHHHHHhhhhcCCCeEEEecccCC
Q 022952 14 PTEVLLVVDAMTGQ--EAAALVTTFNIEIGITGAILTKLDGD 53 (289)
Q Consensus 14 P~ev~LVldAttgq--da~~~a~~F~~~v~i~gvIlTKlDet 53 (289)
.+-++||+|++.+. ......+.....--+--+|+||+|..
T Consensus 116 ~d~vi~v~d~~~~~~~~~~~~~~~l~~~~~p~i~v~nK~Dl~ 157 (223)
T 4dhe_A 116 LCGMILMMDARRPLTELDRRMIEWFAPTGKPIHSLLTKCDKL 157 (223)
T ss_dssp EEEEEEEEETTSCCCHHHHHHHHHHGGGCCCEEEEEECGGGS
T ss_pred cCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCEEEEEeccccC
Confidence 45699999998753 22233344333112345778888874
No 56
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=42.49 E-value=7.5 Score=31.59 Aligned_cols=42 Identities=12% Similarity=-0.001 Sum_probs=23.6
Q ss_pred CCCeEEEEEeCcCcHHHHHH----HHHhhhh--cCCCeEEEecccCCC
Q 022952 13 NPTEVLLVVDAMTGQEAAAL----VTTFNIE--IGITGAILTKLDGDS 54 (289)
Q Consensus 13 ~P~ev~LVldAttgqda~~~----a~~F~~~--v~i~gvIlTKlDeta 54 (289)
+.+-++||+|++......+. ...+... -.+--+|+||+|...
T Consensus 101 ~~d~iilv~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~ 148 (204)
T 3th5_A 101 QTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRD 148 (204)
Confidence 35678999998876522222 2222211 012357899999743
No 57
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=35.60 E-value=40 Score=26.38 Aligned_cols=40 Identities=23% Similarity=0.135 Sum_probs=22.4
Q ss_pred CCeEEEEEeCcCcH-HH-HHHHHHhhhhcCCCeEEEecccCC
Q 022952 14 PTEVLLVVDAMTGQ-EA-AALVTTFNIEIGITGAILTKLDGD 53 (289)
Q Consensus 14 P~ev~LVldAttgq-da-~~~a~~F~~~v~i~gvIlTKlDet 53 (289)
.+-+++|+|++.+. .. ....+.....--+--+|+||+|..
T Consensus 105 ~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~ 146 (195)
T 3pqc_A 105 LQMVFLLVDGRIPPQDSDLMMVEWMKSLNIPFTIVLTKMDKV 146 (195)
T ss_dssp EEEEEEEEETTSCCCHHHHHHHHHHHHTTCCEEEEEECGGGS
T ss_pred ceEEEEEecCCCCCCHHHHHHHHHHHHcCCCEEEEEEChhcC
Confidence 36789999988763 22 223333332112345667888863
No 58
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=35.59 E-value=48 Score=27.80 Aligned_cols=40 Identities=25% Similarity=0.276 Sum_probs=24.5
Q ss_pred CCCeEEEEEeCcCcH-HHHH----HHHHhhhh-cCCCeEEEecccC
Q 022952 13 NPTEVLLVVDAMTGQ-EAAA----LVTTFNIE-IGITGAILTKLDG 52 (289)
Q Consensus 13 ~P~ev~LVldAttgq-da~~----~a~~F~~~-v~i~gvIlTKlDe 52 (289)
.++-++||+|++... +... +.+.|... ..+.-+|+||+|.
T Consensus 112 ~~~~~l~v~d~~~~~~~~~~~l~~~~~~~~~~~~~~~iiv~nK~D~ 157 (239)
T 3lxx_A 112 GPHALLLVVPLGRYTEEEHKATEKILKMFGERARSFMILIFTRKDD 157 (239)
T ss_dssp CCSEEEEEEETTCCSSHHHHHHHHHHHHHHHHHGGGEEEEEECGGG
T ss_pred CCcEEEEEeeCCCCCHHHHHHHHHHHHHhhhhccceEEEEEeCCcc
Confidence 468999999986432 2222 33333321 2356789999996
No 59
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=35.56 E-value=47 Score=25.28 Aligned_cols=42 Identities=21% Similarity=0.191 Sum_probs=24.3
Q ss_pred CCCeEEEEEeCcCcH---HHHHHHHHhhhh----cCCCeEEEecccCCC
Q 022952 13 NPTEVLLVVDAMTGQ---EAAALVTTFNIE----IGITGAILTKLDGDS 54 (289)
Q Consensus 13 ~P~ev~LVldAttgq---da~~~a~~F~~~----v~i~gvIlTKlDeta 54 (289)
..+-++||+|++... ++......+... -.+--+|+||+|...
T Consensus 74 ~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 122 (171)
T 1upt_A 74 NTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQ 122 (171)
T ss_dssp TCSEEEEEEETTCCTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTT
T ss_pred cCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhCCCEEEEEEECCCCcC
Confidence 467899999998874 233333333211 112357788888643
No 60
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=35.46 E-value=44 Score=26.57 Aligned_cols=42 Identities=12% Similarity=-0.011 Sum_probs=23.8
Q ss_pred CCCeEEEEEeCcCcHH---HHHHHHHhhhh----cCCCeEEEecccCCC
Q 022952 13 NPTEVLLVVDAMTGQE---AAALVTTFNIE----IGITGAILTKLDGDS 54 (289)
Q Consensus 13 ~P~ev~LVldAttgqd---a~~~a~~F~~~----v~i~gvIlTKlDeta 54 (289)
..+-++||+|++.... +......+... --+--+|+||+|...
T Consensus 90 ~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~ 138 (188)
T 1zd9_A 90 GVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPG 138 (188)
T ss_dssp TCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTT
T ss_pred cCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCCEEEEEECCCCcc
Confidence 5678999999987642 22222222110 012357788888743
No 61
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=34.90 E-value=49 Score=28.41 Aligned_cols=43 Identities=19% Similarity=0.121 Sum_probs=27.3
Q ss_pred CCCeEE-EEEeCcCcH---HHHHHHHHhhhhcCCCeEEEecccCCCC
Q 022952 13 NPTEVL-LVVDAMTGQ---EAAALVTTFNIEIGITGAILTKLDGDSR 55 (289)
Q Consensus 13 ~P~ev~-LVldAttgq---da~~~a~~F~~~v~i~gvIlTKlDetar 55 (289)
.++.++ +|+|++.+. +....++.....-...-+|+||+|....
T Consensus 161 ~~~~~il~v~d~~~~~~~~~~~~~~~~~~~~~~~~i~V~NK~Dl~~~ 207 (299)
T 2aka_B 161 KENCLILAVSPANSDLANSDALKIAKEVDPQGQRTIGVITKLDLMDE 207 (299)
T ss_dssp STTEEEEEEEESSSCGGGCHHHHHHHHHCTTCSSEEEEEECGGGSCT
T ss_pred CCCeEEEEEecCCcchhhhHHHHHHHHhCCCCCeEEEEEEccccCCC
Confidence 445555 699998653 4445566555422355789999998544
No 62
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=34.61 E-value=50 Score=27.98 Aligned_cols=42 Identities=29% Similarity=0.286 Sum_probs=25.0
Q ss_pred hCCCeEEEEEeCcC-cHH---HHHHHHHh-hhh-cCCCeEEEe-cccCC
Q 022952 12 LNPTEVLLVVDAMT-GQE---AAALVTTF-NIE-IGITGAILT-KLDGD 53 (289)
Q Consensus 12 ~~P~ev~LVldAtt-gqd---a~~~a~~F-~~~-v~i~gvIlT-KlDet 53 (289)
..++-++||+|++. ... +.+.+..+ ... -.+.-+|+| |+|..
T Consensus 104 ~~~d~il~V~d~~~~~~~~~~~~~~l~~~~~~~~~~~~i~vv~nK~Dl~ 152 (260)
T 2xtp_A 104 PGPHVLLLVTQLGRYTSQDQQAAQRVKEIFGEDAMGHTIVLFTHKEDLN 152 (260)
T ss_dssp TCCSEEEEEEETTCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECGGGGT
T ss_pred CCCcEEEEEEeCCCCCHHHHHHHHHHHHHhCchhhccEEEEEEcccccC
Confidence 35789999999974 222 22333332 211 135567888 99975
No 63
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=33.35 E-value=57 Score=30.17 Aligned_cols=41 Identities=20% Similarity=0.264 Sum_probs=26.3
Q ss_pred hCCCeEEEEEeCcCcH--HHHHHHHHhhhhcCCC--eEEEecccCC
Q 022952 12 LNPTEVLLVVDAMTGQ--EAAALVTTFNIEIGIT--GAILTKLDGD 53 (289)
Q Consensus 12 ~~P~ev~LVldAttgq--da~~~a~~F~~~v~i~--gvIlTKlDet 53 (289)
...|-++||+||+.|. ...+....... .++- -+++||+|..
T Consensus 97 ~~aD~~ilVvda~~g~~~qt~~~l~~~~~-~~ip~iivviNK~Dl~ 141 (405)
T 2c78_A 97 AQMDGAILVVSAADGPMPQTREHILLARQ-VGVPYIVVFMNKVDMV 141 (405)
T ss_dssp TTCSSEEEEEETTTCCCHHHHHHHHHHHH-TTCCCEEEEEECGGGC
T ss_pred HHCCEEEEEEECCCCCcHHHHHHHHHHHH-cCCCEEEEEEECcccc
Confidence 3578899999999873 23333332222 4555 3679999974
No 64
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=33.27 E-value=46 Score=31.53 Aligned_cols=40 Identities=18% Similarity=0.309 Sum_probs=25.4
Q ss_pred CCCeEEEEEeCcCcH---------HHHHHHHHhhhhcCCC--eEEEecccCC
Q 022952 13 NPTEVLLVVDAMTGQ---------EAAALVTTFNIEIGIT--GAILTKLDGD 53 (289)
Q Consensus 13 ~P~ev~LVldAttgq---------da~~~a~~F~~~v~i~--gvIlTKlDet 53 (289)
..|-++||+||+.|. ...+.+..... +++. -+++||+|..
T Consensus 118 ~aD~~ilVVDa~~g~~e~~~~~~~qt~e~l~~~~~-~~v~~iIvviNK~Dl~ 168 (439)
T 3j2k_7 118 QADLAVLVISARKGEFETGFEKGGQTREHAMLAKT-AGVKHLIVLINKMDDP 168 (439)
T ss_pred hCCEEEEEEECCCCccccccCCCchHHHHHHHHHH-cCCCeEEEEeecCCCc
Confidence 578899999999872 22222222222 4454 4789999974
No 65
>2jjm_A Glycosyl transferase, group 1 family protein; anthrax, nucleotide, carbohydrate; 3.10A {Bacillus anthracis} PDB: 3mbo_A*
Probab=33.06 E-value=2.5e+02 Score=24.59 Aligned_cols=94 Identities=17% Similarity=0.152 Sum_probs=56.1
Q ss_pred CCeEEEecccCCCCCCccccceeccCCCeEEEecCCCCCCCCCCChhHHHHHhhCCCchhHHHHHHHHhcc-HHHHHHHH
Q 022952 42 ITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQ-QEDAEEMQ 120 (289)
Q Consensus 42 i~gvIlTKlDetargG~aLS~~~~t~~PI~FIgtGQkVdDLe~f~p~~la~rlLG~gDi~sLvEk~~~~~~-~~~~~~~~ 120 (289)
-|-+|++=.. ...|..+-=....|+||...-+|---+-++... ...+...+|...|.+.+...++ .+...++.
T Consensus 285 adv~v~ps~~--e~~~~~~~EAma~G~PvI~~~~~~~~e~v~~~~----~g~~~~~~d~~~la~~i~~l~~~~~~~~~~~ 358 (394)
T 2jjm_A 285 SDLMLLLSEK--ESFGLVLLEAMACGVPCIGTRVGGIPEVIQHGD----TGYLCEVGDTTGVADQAIQLLKDEELHRNMG 358 (394)
T ss_dssp CSEEEECCSC--CSCCHHHHHHHHTTCCEEEECCTTSTTTCCBTT----TEEEECTTCHHHHHHHHHHHHHCHHHHHHHH
T ss_pred CCEEEecccc--CCCchHHHHHHhcCCCEEEecCCChHHHhhcCC----ceEEeCCCCHHHHHHHHHHHHcCHHHHHHHH
Confidence 3445554332 234555555678899998776653223332222 2334556788999999888763 33334444
Q ss_pred HHHH---hCCcChHHHHHHHHHHH
Q 022952 121 KKIM---SANFDFNDFLKQTRTVA 141 (289)
Q Consensus 121 ~k~~---~g~F~l~Df~~Q~~~i~ 141 (289)
++.. ...|+.+.+.+++..+.
T Consensus 359 ~~~~~~~~~~~s~~~~~~~~~~~~ 382 (394)
T 2jjm_A 359 ERARESVYEQFRSEKIVSQYETIY 382 (394)
T ss_dssp HHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHH
Confidence 4333 35799998888887764
No 66
>1p9b_A Adenylosuccinate synthetase; ligase; HET: IMO GDP; 2.00A {Plasmodium falciparum} SCOP: c.37.1.10
Probab=32.94 E-value=26 Score=34.45 Aligned_cols=21 Identities=19% Similarity=0.253 Sum_probs=15.5
Q ss_pred ccCCCeEEEecCCCCCCCCCC
Q 022952 65 VSGKPIKLVGRGERMEDLEPF 85 (289)
Q Consensus 65 ~t~~PI~FIgtGQkVdDLe~f 85 (289)
.+++||.+|++|..-++|..-
T Consensus 416 ~~gvpv~~is~GP~R~~ii~~ 436 (442)
T 1p9b_A 416 YLKTPIVWIGVGPNRKNMIVK 436 (442)
T ss_dssp HHTCCEEEEECSSSTTCEEEC
T ss_pred HHCCCEEEEEeCCCHHHeecc
Confidence 457789999999888765443
No 67
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=32.93 E-value=47 Score=30.79 Aligned_cols=40 Identities=23% Similarity=0.229 Sum_probs=26.0
Q ss_pred CCCeEEEEEeCcCcH--HHHHHHHHhhhhcCCC--eEEEecccCC
Q 022952 13 NPTEVLLVVDAMTGQ--EAAALVTTFNIEIGIT--GAILTKLDGD 53 (289)
Q Consensus 13 ~P~ev~LVldAttgq--da~~~a~~F~~~v~i~--gvIlTKlDet 53 (289)
..|-++||+||+.|. ...+....... .++. -+++||+|..
T Consensus 89 ~aD~~ilVvda~~g~~~qt~e~l~~~~~-~~vp~iivviNK~Dl~ 132 (397)
T 1d2e_A 89 PLDGCILVVAANDGPMPQTREHLLLARQ-IGVEHVVVYVNKADAV 132 (397)
T ss_dssp CCSEEEEEEETTTCSCHHHHHHHHHHHH-TTCCCEEEEEECGGGC
T ss_pred hCCEEEEEEECCCCCCHHHHHHHHHHHH-cCCCeEEEEEECcccC
Confidence 578899999999863 23333332222 4555 3679999974
No 68
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=32.85 E-value=42 Score=26.58 Aligned_cols=42 Identities=14% Similarity=0.048 Sum_probs=24.6
Q ss_pred CCCeEEEEEeCcCcHH---HHHHHHHhhhhc------CCCeEEEecccCCC
Q 022952 13 NPTEVLLVVDAMTGQE---AAALVTTFNIEI------GITGAILTKLDGDS 54 (289)
Q Consensus 13 ~P~ev~LVldAttgqd---a~~~a~~F~~~v------~i~gvIlTKlDeta 54 (289)
+.+-++||+|++.... +......+.... -+--+|+||+|...
T Consensus 90 ~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 140 (190)
T 2h57_A 90 EGQAIIFVIDSSDRLRMVVAKEELDTLLNHPDIKHRRIPILFFANKMDLRD 140 (190)
T ss_dssp GCSEEEEEEETTCHHHHHHHHHHHHHHHHSTTTTTSCCCEEEEEECTTSTT
T ss_pred cCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhccCCCeEEEEEeCcCccc
Confidence 4588999999998752 222333332211 12347788888743
No 69
>1rzu_A Glycogen synthase 1; glycosyl-transferase, GT-B fold, rossmann fold, ADP-binding, transferase; HET: ADP; 2.30A {Agrobacterium tumefaciens} SCOP: c.87.1.8 PDB: 1rzv_A
Probab=32.77 E-value=2.1e+02 Score=26.04 Aligned_cols=97 Identities=9% Similarity=-0.022 Sum_probs=59.9
Q ss_pred CeEEEecccCCCCCCccccceeccCCCeEEEecCCCCCCCCCCChhH-----HHHHhhCCCchhHHHHHHHHhc----cH
Q 022952 43 TGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGERMEDLEPFYPDR-----MAGRILGMGDVLSFVEKAQEVM----QQ 113 (289)
Q Consensus 43 ~gvIlTKlDetargG~aLS~~~~t~~PI~FIgtGQkVdDLe~f~p~~-----la~rlLG~gDi~sLvEk~~~~~----~~ 113 (289)
|-+|++=.- ...|.++-=+...|+||.-..+|---|-++..+++. -...+...+|...|.+.+...+ +.
T Consensus 367 dv~v~pS~~--E~~~~~~lEAma~G~PvI~s~~gg~~e~v~~~~~~~~~~~~~~G~l~~~~d~~~la~~i~~ll~~~~~~ 444 (485)
T 1rzu_A 367 DAIIIPSRF--EPCGLTQLYALRYGCIPVVARTGGLADTVIDANHAALASKAATGVQFSPVTLDGLKQAIRRTVRYYHDP 444 (485)
T ss_dssp SEEEECCSC--CSSCSHHHHHHHHTCEEEEESSHHHHHHCCBCCHHHHHTTCCCBEEESSCSHHHHHHHHHHHHHHHTCH
T ss_pred CEEEECccc--CCCCHHHHHHHHCCCCEEEeCCCChhheecccccccccccCCcceEeCCCCHHHHHHHHHHHHHHhCCH
Confidence 345554332 234556666677899998765542112222221110 1123445679999999998886 55
Q ss_pred HHHHHHHHHHHhCCcChHHHHHHHHHHH
Q 022952 114 EDAEEMQKKIMSANFDFNDFLKQTRTVA 141 (289)
Q Consensus 114 ~~~~~~~~k~~~g~F~l~Df~~Q~~~i~ 141 (289)
+..+++.++-....|+.+.+.+++..+-
T Consensus 445 ~~~~~~~~~~~~~~fs~~~~~~~~~~~y 472 (485)
T 1rzu_A 445 KLWTQMQKLGMKSDVSWEKSAGLYAALY 472 (485)
T ss_dssp HHHHHHHHHHHTCCCBHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCChHHHHHHHHHHH
Confidence 5566777766667899999998887764
No 70
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=32.68 E-value=52 Score=25.73 Aligned_cols=42 Identities=17% Similarity=0.138 Sum_probs=24.8
Q ss_pred CCCeEEEEEeCcCcH---HHHHHHHHhhhh----cCCCeEEEecccCCC
Q 022952 13 NPTEVLLVVDAMTGQ---EAAALVTTFNIE----IGITGAILTKLDGDS 54 (289)
Q Consensus 13 ~P~ev~LVldAttgq---da~~~a~~F~~~----v~i~gvIlTKlDeta 54 (289)
+.+-+++|+|++... ++......+... -.+--+|+||+|...
T Consensus 85 ~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 133 (186)
T 1ksh_A 85 STDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPG 133 (186)
T ss_dssp TCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTT
T ss_pred CCCEEEEEEECcCHHHHHHHHHHHHHHHhChhcCCCcEEEEEeCccCCC
Confidence 467899999998875 222233332211 122357888988743
No 71
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=32.65 E-value=76 Score=23.91 Aligned_cols=42 Identities=21% Similarity=0.211 Sum_probs=24.4
Q ss_pred CCCeEEEEEeCcCcHHH---HHHHHHhhhhc--C-CCeEEEecccCCC
Q 022952 13 NPTEVLLVVDAMTGQEA---AALVTTFNIEI--G-ITGAILTKLDGDS 54 (289)
Q Consensus 13 ~P~ev~LVldAttgqda---~~~a~~F~~~v--~-i~gvIlTKlDeta 54 (289)
+.+-++||+|++..... ......+.... + +--+|+||+|...
T Consensus 75 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 122 (170)
T 1ek0_A 75 NAQAALVVYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDXLQ 122 (170)
T ss_dssp TCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGG
T ss_pred cCcEEEEEEecCChHHHHHHHHHHHHHHHhcCCCCcEEEEEECCCccc
Confidence 45789999999987522 22233333211 1 1236779999743
No 72
>3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine kinase domain, signaling protein, transferase, inner membrane, membrane; 2.50A {Escherichia coli}
Probab=32.27 E-value=60 Score=28.97 Aligned_cols=43 Identities=21% Similarity=0.188 Sum_probs=31.4
Q ss_pred CCeEEEEEeCcCcH--HHHHHHHHhhh-hcCCCeEEEecccCCCCC
Q 022952 14 PTEVLLVVDAMTGQ--EAAALVTTFNI-EIGITGAILTKLDGDSRG 56 (289)
Q Consensus 14 P~ev~LVldAttgq--da~~~a~~F~~-~v~i~gvIlTKlDetarg 56 (289)
.+.+++|+.+.... ++...++.+.. .+++-|+|++++|.....
T Consensus 237 ad~vilV~~~~~~~~~~~~~~~~~l~~~~~~~~GvVlN~~~~~~~~ 282 (299)
T 3cio_A 237 VGTSLLVARFGLNTAKEVSLSMQRLEQAGVNIKGAILNGVIKRAST 282 (299)
T ss_dssp CSEEEEEEETTTSCTTHHHHHHHHHHHTTCCCCCEEEEECCCCCSS
T ss_pred CCEEEEEEcCCCChHHHHHHHHHHHHhCCCCeEEEEEeCCccCCCC
Confidence 57889999876654 55556666653 356899999999987654
No 73
>3n53_A Response regulator receiver modulated diguanylate; diguanylate cyclase, protein structure I II(PSI II), NYSGXRC, structural genomics; 2.20A {Pelobacter carbinolicus} SCOP: c.23.1.0
Probab=31.94 E-value=1.3e+02 Score=22.05 Aligned_cols=96 Identities=14% Similarity=0.085 Sum_probs=46.9
Q ss_pred HHHhCCCeEEEEEeCcCcHHHHHHHHHhhhhcCCCeEEEecccC-CCCCCccccceec----cCCCeEEEecCCCCCCCC
Q 022952 9 KRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDG-DSRGGAALSVKEV----SGKPIKLVGRGERMEDLE 83 (289)
Q Consensus 9 ~~~~~P~ev~LVldAttgqda~~~a~~F~~~v~i~gvIlTKlDe-targG~aLS~~~~----t~~PI~FIgtGQkVdDLe 83 (289)
...+... +-|..+.++.++.+.+... +++-+|+ =++- ...|-.++..... ...||.+++.-...+...
T Consensus 20 ~~~l~~~--~~v~~~~~~~~a~~~~~~~----~~dlvi~-D~~l~~~~g~~~~~~l~~~~~~~~~~ii~~s~~~~~~~~~ 92 (140)
T 3n53_A 20 KNFLDSE--YLVIESKNEKEALEQIDHH----HPDLVIL-DMDIIGENSPNLCLKLKRSKGLKNVPLILLFSSEHKEAIV 92 (140)
T ss_dssp HHHHTTT--SEEEEESSHHHHHHHHHHH----CCSEEEE-ETTC------CHHHHHHTSTTCTTCCEEEEECC----CTT
T ss_pred HHHHHhc--ceEEEeCCHHHHHHHHhcC----CCCEEEE-eCCCCCCcHHHHHHHHHcCcccCCCCEEEEecCCCHHHHH
Confidence 3444443 6677788888888877653 4665554 3332 2222233332222 578999998765544333
Q ss_pred CCChhHHHHHhhCCCchhHHHHHHHHhc
Q 022952 84 PFYPDRMAGRILGMGDVLSFVEKAQEVM 111 (289)
Q Consensus 84 ~f~p~~la~rlLG~gDi~sLvEk~~~~~ 111 (289)
.+-.......|.---+...|.+.++.+.
T Consensus 93 ~~~~~g~~~~l~KP~~~~~l~~~i~~~~ 120 (140)
T 3n53_A 93 NGLHSGADDYLTKPFNRNDLLSRIEIHL 120 (140)
T ss_dssp TTTTCCCSEEEESSCCHHHHHHHHHHHH
T ss_pred HHHhcCCCeeeeCCCCHHHHHHHHHHHH
Confidence 2222222233333345666666665554
No 74
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=31.54 E-value=53 Score=25.29 Aligned_cols=41 Identities=22% Similarity=0.173 Sum_probs=24.9
Q ss_pred CCCeEEEEEeCcCcHH---HHHHHHHhhh------hcCCCeEEEecccCC
Q 022952 13 NPTEVLLVVDAMTGQE---AAALVTTFNI------EIGITGAILTKLDGD 53 (289)
Q Consensus 13 ~P~ev~LVldAttgqd---a~~~a~~F~~------~v~i~gvIlTKlDet 53 (289)
..+-++||+|++.... +......+.. ..++--+|+||+|..
T Consensus 79 ~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iilv~nK~Dl~ 128 (178)
T 2hxs_A 79 GAQGVLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKIDLE 128 (178)
T ss_dssp TCSEEEEEEETTCHHHHHTHHHHHHHHHHHHHHHTCCCEEEEEEECGGGG
T ss_pred hCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCeEEEEEEccccc
Confidence 4678999999988753 2222222222 122235789999974
No 75
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=31.47 E-value=72 Score=30.39 Aligned_cols=42 Identities=19% Similarity=0.220 Sum_probs=24.4
Q ss_pred hCCCeEEEEEeCcCcH---------HHHHHHHHhhhhcCC--CeEEEecccCCC
Q 022952 12 LNPTEVLLVVDAMTGQ---------EAAALVTTFNIEIGI--TGAILTKLDGDS 54 (289)
Q Consensus 12 ~~P~ev~LVldAttgq---------da~~~a~~F~~~v~i--~gvIlTKlDeta 54 (289)
...|-++||+||+.|. ...+.+..... +++ --+++||+|...
T Consensus 133 ~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~~~-~~~~~iIvviNK~Dl~~ 185 (483)
T 3p26_A 133 SQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASS-LGIHNLIIAMNKMDNVD 185 (483)
T ss_dssp TTCSEEEEEEECCC------CCCCHHHHHHHHHHHH-TTCCCEEEEEECGGGGT
T ss_pred hhCCEEEEEEECCCCccccccchhhhHHHHHHHHHH-cCCCcEEEEEECcCccc
Confidence 4578899999999862 12222222111 343 356799999753
No 76
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=31.47 E-value=69 Score=25.17 Aligned_cols=15 Identities=33% Similarity=0.392 Sum_probs=12.8
Q ss_pred CCCeEEEEEeCcCcH
Q 022952 13 NPTEVLLVVDAMTGQ 27 (289)
Q Consensus 13 ~P~ev~LVldAttgq 27 (289)
..+-++||+|++...
T Consensus 86 ~~d~ii~v~D~~~~~ 100 (199)
T 4bas_A 86 NIDAVIFVVDSSDHL 100 (199)
T ss_dssp TCSEEEEEEETTCGG
T ss_pred cCCEEEEEEECCcHH
Confidence 468899999999875
No 77
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=30.88 E-value=73 Score=24.05 Aligned_cols=42 Identities=21% Similarity=0.180 Sum_probs=24.6
Q ss_pred CCCeEEEEEeCcCcH---HHHHHHHHhhhh----cCCCeEEEecccCCC
Q 022952 13 NPTEVLLVVDAMTGQ---EAAALVTTFNIE----IGITGAILTKLDGDS 54 (289)
Q Consensus 13 ~P~ev~LVldAttgq---da~~~a~~F~~~----v~i~gvIlTKlDeta 54 (289)
+.+-++||+|++... ++......+... -.+--+|+||+|...
T Consensus 67 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 115 (164)
T 1r8s_A 67 NTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPN 115 (164)
T ss_dssp TCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTT
T ss_pred cCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCeEEEEEECcCCcC
Confidence 568899999998874 222333333211 012357788888743
No 78
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=30.75 E-value=63 Score=31.04 Aligned_cols=39 Identities=36% Similarity=0.393 Sum_probs=27.0
Q ss_pred hCCCeEEEEEeCcCc---H--HHHHHHHHhhhhcCCCeEEEecccCC
Q 022952 12 LNPTEVLLVVDAMTG---Q--EAAALVTTFNIEIGITGAILTKLDGD 53 (289)
Q Consensus 12 ~~P~ev~LVldAttg---q--da~~~a~~F~~~v~i~gvIlTKlDet 53 (289)
...|-++||+||+.| | +....++.+ .+++ -+++||+|..
T Consensus 95 ~~aD~~ilVvda~~g~~~qt~e~l~~~~~~--~ip~-IvviNK~Dl~ 138 (482)
T 1wb1_A 95 DIIDLALIVVDAKEGPKTQTGEHMLILDHF--NIPI-IVVITKSDNA 138 (482)
T ss_dssp TSCCEEEEEEETTTCSCHHHHHHHHHHHHT--TCCB-CEEEECTTSS
T ss_pred hhCCEEEEEEecCCCccHHHHHHHHHHHHc--CCCE-EEEEECCCcc
Confidence 357889999999984 3 233344443 2566 8889999964
No 79
>1g3q_A MIND ATPase, cell division inhibitor; alpha-beta-alpha layered, protein-ADP complex, cell cycle, hydrolase; HET: ADP; 2.00A {Pyrococcus furiosus} SCOP: c.37.1.10 PDB: 1g3r_A* 1ion_A*
Probab=30.58 E-value=51 Score=27.24 Aligned_cols=58 Identities=17% Similarity=0.266 Sum_probs=35.8
Q ss_pred CCCeEEEEEeCcCcH--HHHHHHHHhhh-hcCCCeEEEecccCCCCCCccccceeccCCCe
Q 022952 13 NPTEVLLVVDAMTGQ--EAAALVTTFNI-EIGITGAILTKLDGDSRGGAALSVKEVSGKPI 70 (289)
Q Consensus 13 ~P~ev~LVldAttgq--da~~~a~~F~~-~v~i~gvIlTKlDetargG~aLS~~~~t~~PI 70 (289)
..|.+++|+.+.... ++....+.+.. .+.+-++|+|+.|.....-.+-.+....+.|+
T Consensus 133 ~ad~vi~v~~~~~~~~~~~~~~~~~l~~~~~~~~~vv~N~~~~~~~~~~~~~~~~~~~~~~ 193 (237)
T 1g3q_A 133 SGEEALLVTNPEISCLTDTMKVGIVLKKAGLAILGFVLNRYGRSDRDIPPEAAEDVMEVPL 193 (237)
T ss_dssp TCSEEEEEECSCHHHHHHHHHHHHHHHHTTCEEEEEEEEEETSCTTCCCHHHHHHHHCSCE
T ss_pred HCCeEEEEecCCcccHHHHHHHHHHHHhCCCceEEEEEecCCcccchhHHHHHHHHhCccc
Confidence 357888888887654 44445555543 24567999999998655422223334456664
No 80
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=30.41 E-value=62 Score=25.39 Aligned_cols=42 Identities=17% Similarity=0.046 Sum_probs=24.4
Q ss_pred CCCeEEEEEeCcCcH---HHHHHHHHhhhh----cCCCeEEEecccCCC
Q 022952 13 NPTEVLLVVDAMTGQ---EAAALVTTFNIE----IGITGAILTKLDGDS 54 (289)
Q Consensus 13 ~P~ev~LVldAttgq---da~~~a~~F~~~----v~i~gvIlTKlDeta 54 (289)
..+-++||+|++... ++.+....+... --+--+|+||+|...
T Consensus 88 ~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~ 136 (181)
T 2h17_A 88 NTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKE 136 (181)
T ss_dssp TCCEEEEEEETTCTTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTT
T ss_pred cCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhCCCeEEEEEECCCccc
Confidence 457899999999874 232333332211 112357788988643
No 81
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=30.22 E-value=62 Score=28.85 Aligned_cols=41 Identities=15% Similarity=0.171 Sum_probs=26.0
Q ss_pred CCCeEEEEEeCcCcH--HHHHH-HHHhhhhcCCCeEEEecccCC
Q 022952 13 NPTEVLLVVDAMTGQ--EAAAL-VTTFNIEIGITGAILTKLDGD 53 (289)
Q Consensus 13 ~P~ev~LVldAttgq--da~~~-a~~F~~~v~i~gvIlTKlDet 53 (289)
..|-+++|+|++.+. +.... .+.....--+--+|+||+|..
T Consensus 92 ~aD~il~VvD~~~~~~~~~~~~~~~~l~~~~~pvilV~NK~Dl~ 135 (308)
T 3iev_A 92 EADVILFMIDATEGWRPRDEEIYQNFIKPLNKPVIVVINKIDKI 135 (308)
T ss_dssp HCSEEEEEEETTTBSCHHHHHHHHHHTGGGCCCEEEEEECGGGS
T ss_pred cCCEEEEEEeCCCCCCchhHHHHHHHHHhcCCCEEEEEECccCC
Confidence 578899999999764 33333 444443112456778999875
No 82
>3qfa_C Thioredoxin; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_C*
Probab=30.21 E-value=1e+02 Score=22.61 Aligned_cols=88 Identities=11% Similarity=0.192 Sum_probs=47.8
Q ss_pred HHHHHHHHHhCCCeEEEEEeCcCcHHHHH---HHHHhhhhcCCCeEEEecccCCCCCCccccceeccCCCe-EEEecCCC
Q 022952 3 DELKDVKRVLNPTEVLLVVDAMTGQEAAA---LVTTFNIEIGITGAILTKLDGDSRGGAALSVKEVSGKPI-KLVGRGER 78 (289)
Q Consensus 3 ~ELk~i~~~~~P~ev~LVldAttgqda~~---~a~~F~~~v~i~gvIlTKlDetargG~aLS~~~~t~~PI-~FIgtGQk 78 (289)
+++.++....+..-+++..-|..-..+.. ..+.+... +.++.+-++|-+... .+..-....+.|- .|+-.|+.
T Consensus 20 ~~f~~~l~~~~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~--~~~v~~~~vd~d~~~-~l~~~~~v~~~Pt~~~~~~G~~ 96 (116)
T 3qfa_C 20 TAFQEALDAAGDKLVVVDFSATWCGPSKMIKPFFHSLSEK--YSNVIFLEVDVDDCQ-DVASECEVKSMPTFQFFKKGQK 96 (116)
T ss_dssp HHHHHHHHHHTTSCEEEEEECTTCHHHHHHHHHHHHHHTT--CTTSEEEEEETTTTH-HHHHHTTCCSSSEEEEESSSSE
T ss_pred HHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHHHHHHHH--CCCCEEEEEECCCCH-HHHHHcCCccccEEEEEeCCeE
Confidence 45555555444455666666766654444 34444432 334888888876532 2333334567784 44566766
Q ss_pred CCCCCCCChhHHHHH
Q 022952 79 MEDLEPFYPDRMAGR 93 (289)
Q Consensus 79 VdDLe~f~p~~la~r 93 (289)
+..+.-++++.|...
T Consensus 97 ~~~~~G~~~~~l~~~ 111 (116)
T 3qfa_C 97 VGEFSGANKEKLEAT 111 (116)
T ss_dssp EEEEESCCHHHHHHH
T ss_pred EEEEcCCCHHHHHHH
Confidence 654444455554443
No 83
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=29.98 E-value=75 Score=24.22 Aligned_cols=41 Identities=20% Similarity=0.203 Sum_probs=24.0
Q ss_pred CCCeEEEEEeCcCcHH---HHHHHHHhhhhcC---CCeEEEecccCC
Q 022952 13 NPTEVLLVVDAMTGQE---AAALVTTFNIEIG---ITGAILTKLDGD 53 (289)
Q Consensus 13 ~P~ev~LVldAttgqd---a~~~a~~F~~~v~---i~gvIlTKlDet 53 (289)
..+-++||+|++.... +......+....+ +--+|+||+|..
T Consensus 86 ~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~ 132 (179)
T 2y8e_A 86 DSTVAVVVYDITNTNSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLS 132 (179)
T ss_dssp TCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECGGGG
T ss_pred CCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCccc
Confidence 5688999999987642 2222222222111 125788999963
No 84
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=29.54 E-value=79 Score=24.64 Aligned_cols=40 Identities=15% Similarity=0.168 Sum_probs=23.4
Q ss_pred CCCeEEEEEeCcCcHHH---HHHHHHhhhhcC----CCeEEEecccC
Q 022952 13 NPTEVLLVVDAMTGQEA---AALVTTFNIEIG----ITGAILTKLDG 52 (289)
Q Consensus 13 ~P~ev~LVldAttgqda---~~~a~~F~~~v~----i~gvIlTKlDe 52 (289)
..+-++||+|++..... ......+..... +--+|+||+|.
T Consensus 87 ~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl 133 (195)
T 1x3s_A 87 GAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDK 133 (195)
T ss_dssp TCCEEEEEEETTCHHHHHTHHHHHHHHTTCCSCSCCEEEEEEECTTS
T ss_pred cCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCcEEEEEECCcC
Confidence 46789999999887532 222333332111 11367788886
No 85
>3jx9_A Putative phosphoheptose isomerase; YP_001815198.1, structura genomics, joint center for structural genomics, JCSG; HET: MSE; 1.95A {Exiguobacterium sibiricum 255-15}
Probab=28.96 E-value=1.3e+02 Score=25.22 Aligned_cols=79 Identities=16% Similarity=0.129 Sum_probs=51.7
Q ss_pred HhCCCeEEEEEeCcCcH-HHHHHHHHhhhhcCCCeEEEecccCCCCCC-ccccceeccCCCeEEEecCCCCCCCCCCChh
Q 022952 11 VLNPTEVLLVVDAMTGQ-EAAALVTTFNIEIGITGAILTKLDGDSRGG-AALSVKEVSGKPIKLVGRGERMEDLEPFYPD 88 (289)
Q Consensus 11 ~~~P~ev~LVldAttgq-da~~~a~~F~~~v~i~gvIlTKlDetargG-~aLS~~~~t~~PI~FIgtGQkVdDLe~f~p~ 88 (289)
.+.|.++++|++.+... ++++.|...++ -++.-+.+|-+.-+...| .+..++..+..|+.+.-.|.++ -.|.
T Consensus 74 ~i~~~D~vii~S~Sg~n~~~ie~A~~ake-~G~~vIaITs~~~~~~~~~~L~d~an~~p~gll~~e~g~r~-----g~~S 147 (170)
T 3jx9_A 74 TLHAVDRVLIFTPDTERSDLLASLARYDA-WHTPYSIITLGDVTETLERSIAPLALKFDKGLLPAEDGSRH-----GLPS 147 (170)
T ss_dssp CCCTTCEEEEEESCSCCHHHHHHHHHHHH-HTCCEEEEESSCCCTTGGGSSSCEECCCCSCSEECTTSCEE-----CCCH
T ss_pred CCCCCCEEEEEeCCCCCHHHHHHHHHHHH-CCCcEEEEeCcchhccccCcHHHHHhCCCCCceECCCCCEe-----chhH
Confidence 36799999999988887 68899999887 899999999965554433 3334443344444444334333 2455
Q ss_pred HHHHHhh
Q 022952 89 RMAGRIL 95 (289)
Q Consensus 89 ~la~rlL 95 (289)
.++...+
T Consensus 148 ti~~~~i 154 (170)
T 3jx9_A 148 LALGAFL 154 (170)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5555544
No 86
>3fgn_A Dethiobiotin synthetase; biotin biosynthesis, BIOD, ATP-BIND ligase, magnesium, nucleotide-binding; 1.85A {Mycobacterium tuberculosis} PDB: 3fmf_A* 3fmi_A* 3fpa_A*
Probab=28.90 E-value=63 Score=28.55 Aligned_cols=56 Identities=13% Similarity=0.178 Sum_probs=35.5
Q ss_pred CeEEEEEeCcCcH--HHHHHHHHh-hhhcCCCeEEEecccCCCC--CCccccceeccCCCeE
Q 022952 15 TEVLLVVDAMTGQ--EAAALVTTF-NIEIGITGAILTKLDGDSR--GGAALSVKEVSGKPIK 71 (289)
Q Consensus 15 ~ev~LVldAttgq--da~~~a~~F-~~~v~i~gvIlTKlDetar--gG~aLS~~~~t~~PI~ 71 (289)
..|+||+|+..|. ++...++.+ ...+++-|+|++|+.++.. -...+...... +|+.
T Consensus 158 ~pVILV~~~~~g~i~~~~lt~~~l~~~g~~i~GvIlN~v~~~~~~~~~~~~~~le~~-vpvL 218 (251)
T 3fgn_A 158 AAALVVVTADLGTLNHTKLTLEALAAQQVSCAGLVIGSWPDPPGLVAASNRSALARI-AMVR 218 (251)
T ss_dssp CEEEEEECSSTTHHHHHHHHHHHHHHTTCCEEEEEEEEECSSCCHHHHHHHHHHHHH-SCEE
T ss_pred CCEEEEEcCCCccHHHHHHHHHHHHhCCCCEEEEEEECCCCchhhhhhhHHHHHHHh-CCEE
Confidence 6799999999876 444444433 4457899999999965421 12223444444 6754
No 87
>3la6_A Tyrosine-protein kinase WZC; P-loop protein, nucleotide binding domain, walker A motif, B protein kinase, oligomerization; HET: ADP; 3.20A {Escherichia coli}
Probab=28.68 E-value=77 Score=28.22 Aligned_cols=42 Identities=19% Similarity=0.270 Sum_probs=30.5
Q ss_pred CCeEEEEEeCcCcH--HHHHHHHHhhh-hcCCCeEEEecccCCCC
Q 022952 14 PTEVLLVVDAMTGQ--EAAALVTTFNI-EIGITGAILTKLDGDSR 55 (289)
Q Consensus 14 P~ev~LVldAttgq--da~~~a~~F~~-~v~i~gvIlTKlDetar 55 (289)
.|.++||+.+..-. ++....+.+.. .+++-|+|++++|..+.
T Consensus 225 aD~vllVv~~~~~~~~~~~~~~~~l~~~g~~~~GvVlN~v~~~~~ 269 (286)
T 3la6_A 225 VGTTLMVARYAVNTLKEVETSLSRFEQNGIPVKGVILNSIFRRAS 269 (286)
T ss_dssp CSEEEEEEETTTSBHHHHHHHHHHHHHTTCCCCEEEEEEECCCCC
T ss_pred CCeEEEEEeCCCCcHHHHHHHHHHHHhCCCCEEEEEEcCcccccc
Confidence 57899999987543 45556666654 25788999999997654
No 88
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=28.67 E-value=77 Score=25.37 Aligned_cols=42 Identities=21% Similarity=0.196 Sum_probs=24.9
Q ss_pred CCCeEEEEEeCcCcH---HHHHHHHHhhhh----cCCCeEEEecccCCC
Q 022952 13 NPTEVLLVVDAMTGQ---EAAALVTTFNIE----IGITGAILTKLDGDS 54 (289)
Q Consensus 13 ~P~ev~LVldAttgq---da~~~a~~F~~~----v~i~gvIlTKlDeta 54 (289)
..+-++||+|++... ++......+... -.+--+|+||+|...
T Consensus 96 ~~d~iilv~D~~~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~ 144 (192)
T 2b6h_A 96 NTQGLIFVVDSNDRERVQESADELQKMLQEDELRDAVLLVFANKQDMPN 144 (192)
T ss_dssp TCCEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTT
T ss_pred cCCEEEEEEECCCHHHHHHHHHHHHHHhcccccCCCeEEEEEECCCCCC
Confidence 568899999999874 232333332210 012357789998743
No 89
>3ff5_A PEX14P, peroxisomal biogenesis factor 14; protein import, peroxin, 3 helices bundle, protein transport; HET: DPW; 1.80A {Rattus norvegicus}
Probab=28.48 E-value=46 Score=23.50 Aligned_cols=34 Identities=12% Similarity=0.227 Sum_probs=27.5
Q ss_pred hcCccccCCCchhhHHhhccCCCCHHHHHHHHHH
Q 022952 186 REKPELLAESPVRRKRVAQDSGKTEQQVSQLVAQ 219 (289)
Q Consensus 186 r~nP~li~~~~SR~~RIA~GSG~~~~eVn~Llk~ 219 (289)
+.||.+-+....++..--+.-|.|.+||.++|++
T Consensus 20 L~dp~V~~sp~~~K~~FL~sKGLt~~EI~~Al~r 53 (54)
T 3ff5_A 20 LQNSRVRQSPLATRRAFLKKKGLTDEEIDLAFQQ 53 (54)
T ss_dssp HHCTTGGGSCHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred hCChhhhcCCHHHHHHHHHHcCCCHHHHHHHHHc
Confidence 5799987654466777779999999999998874
No 90
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=28.44 E-value=80 Score=23.91 Aligned_cols=41 Identities=15% Similarity=0.138 Sum_probs=23.8
Q ss_pred CCCeEEEEEeCcCcHH---HHHHHHHhhhhc---CCCeEEEecccCC
Q 022952 13 NPTEVLLVVDAMTGQE---AAALVTTFNIEI---GITGAILTKLDGD 53 (289)
Q Consensus 13 ~P~ev~LVldAttgqd---a~~~a~~F~~~v---~i~gvIlTKlDet 53 (289)
..+-++||+|++.... +......+.... .+--+|+||+|..
T Consensus 78 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 124 (170)
T 1z08_A 78 DSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLE 124 (170)
T ss_dssp TCSEEEEEEETTCHHHHHHHHHHHHHHHHHHGGGSEEEEEEECGGGG
T ss_pred cCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECcccc
Confidence 4577999999988752 222222222211 1225788999974
No 91
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=28.36 E-value=74 Score=24.98 Aligned_cols=42 Identities=19% Similarity=0.104 Sum_probs=25.1
Q ss_pred CCCeEEEEEeCcCcH---HHHHHHHHhhhh----cCCCeEEEecccCCC
Q 022952 13 NPTEVLLVVDAMTGQ---EAAALVTTFNIE----IGITGAILTKLDGDS 54 (289)
Q Consensus 13 ~P~ev~LVldAttgq---da~~~a~~F~~~----v~i~gvIlTKlDeta 54 (289)
..+-+++|+|++... ++......+... -.+--+|+||+|...
T Consensus 89 ~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 137 (189)
T 2x77_A 89 DTDAVIYVVDSTDRDRMGVAKHELYALLDEDELRKSLLLIFANKQDLPD 137 (189)
T ss_dssp TCCEEEEEEETTCCTTHHHHHHHHHHHHTCSTTTTCEEEEEEECTTSTT
T ss_pred cCCEEEEEEeCCCHHHHHHHHHHHHHHHhhhhcCCCeEEEEEECCCCcC
Confidence 457899999999874 333333333221 112357889999744
No 92
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=28.17 E-value=54 Score=31.19 Aligned_cols=41 Identities=12% Similarity=0.192 Sum_probs=25.3
Q ss_pred hCCCeEEEEEeCcCcH---------HHHHHHHHhhhhcCCC--eEEEecccCC
Q 022952 12 LNPTEVLLVVDAMTGQ---------EAAALVTTFNIEIGIT--GAILTKLDGD 53 (289)
Q Consensus 12 ~~P~ev~LVldAttgq---------da~~~a~~F~~~v~i~--gvIlTKlDet 53 (289)
...|-++||+||+.|. ...+.+.... .+++. -+++||+|..
T Consensus 107 ~~aD~~ilVvda~~g~~~~sf~~~~qt~~~~~~~~-~~~v~~iivviNK~Dl~ 158 (458)
T 1f60_A 107 SQADCAILIIAGGVGEFEAGISKDGQTREHALLAF-TLGVRQLIVAVNKMDSV 158 (458)
T ss_dssp SCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHH-HTTCCEEEEEEECGGGG
T ss_pred hhCCEEEEEEeCCcCccccccCcchhHHHHHHHHH-HcCCCeEEEEEEccccc
Confidence 3578899999999873 1222222222 24554 3569999975
No 93
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=27.83 E-value=1.1e+02 Score=27.58 Aligned_cols=44 Identities=23% Similarity=0.169 Sum_probs=27.6
Q ss_pred CCCeE-EEEEeCcCcH---HHHHHHHHhhhhcCCCeEEEecccCCCCC
Q 022952 13 NPTEV-LLVVDAMTGQ---EAAALVTTFNIEIGITGAILTKLDGDSRG 56 (289)
Q Consensus 13 ~P~ev-~LVldAttgq---da~~~a~~F~~~v~i~gvIlTKlDetarg 56 (289)
+++.+ ++|+||+.+. +...+++.+...-...-+|+||+|....+
T Consensus 166 ~~~~iiL~v~~a~~~~~~~~~~~i~~~~~~~~~~~i~V~NK~Dl~~~~ 213 (353)
T 2x2e_A 166 KENCLILAVSPANSDLANSDALKVAKEVDPQGQRTIGVITKLDLMDEG 213 (353)
T ss_dssp STTEEEEEEEETTSCGGGCHHHHHHHHHCTTCTTEEEEEECGGGSCTT
T ss_pred CCCeEEEEEecCCCccchhHHHHHHHHhCcCCCceEEEeccccccCcc
Confidence 45554 4466776542 55567776654334567899999986543
No 94
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=27.74 E-value=78 Score=24.21 Aligned_cols=40 Identities=15% Similarity=0.086 Sum_probs=23.5
Q ss_pred CCCeEEEEEeCcCcHHHH---HHHHHhhhhc-------CCCeEEEecccC
Q 022952 13 NPTEVLLVVDAMTGQEAA---ALVTTFNIEI-------GITGAILTKLDG 52 (289)
Q Consensus 13 ~P~ev~LVldAttgqda~---~~a~~F~~~v-------~i~gvIlTKlDe 52 (289)
..+-++||+|++...... .....+.... -+--+|+||+|.
T Consensus 81 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl 130 (182)
T 1ky3_A 81 GADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDA 130 (182)
T ss_dssp TCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTS
T ss_pred cCCEEEEEEECCChHHHHHHHHHHHHHHHHhcccCcCCCcEEEEEECCcc
Confidence 357799999998876322 2222222211 133678899996
No 95
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=27.67 E-value=94 Score=23.66 Aligned_cols=41 Identities=17% Similarity=0.057 Sum_probs=23.6
Q ss_pred CCCeEEEEEeCcCcHHHH---HHHHHhhhhc---CCCeEEEecccCC
Q 022952 13 NPTEVLLVVDAMTGQEAA---ALVTTFNIEI---GITGAILTKLDGD 53 (289)
Q Consensus 13 ~P~ev~LVldAttgqda~---~~a~~F~~~v---~i~gvIlTKlDet 53 (289)
..+-++||+|++...... .....+.... .+--+|+||+|..
T Consensus 87 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 133 (179)
T 1z0f_A 87 GAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLE 133 (179)
T ss_dssp TCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCG
T ss_pred cCCEEEEEEeCcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccc
Confidence 467899999999875222 2222222211 1125778888863
No 96
>2w84_A Peroxisomal membrane protein PEX14; zellweger syndrome, alternative splicing, phosphoprotein, protein complex, disease mutation, peroxisome; NMR {Homo sapiens} PDB: 2w85_A
Probab=27.48 E-value=50 Score=24.55 Aligned_cols=35 Identities=11% Similarity=0.207 Sum_probs=29.2
Q ss_pred hcCccccCCCchhhHHhhccCCCCHHHHHHHHHHH
Q 022952 186 REKPELLAESPVRRKRVAQDSGKTEQQVSQLVAQL 220 (289)
Q Consensus 186 r~nP~li~~~~SR~~RIA~GSG~~~~eVn~Llk~f 220 (289)
++||++-.....++..--+.-|.|.+||.+++++-
T Consensus 25 Lqdp~V~~sp~~~K~~FL~sKGLt~eEI~~Al~ra 59 (70)
T 2w84_A 25 LQNSRVRQSPLATRRAFLKKKGLTDEEIDMAFQQS 59 (70)
T ss_dssp HCSTTGGGSCHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred hCChhhhhCCHHHHHHHHHHcCCCHHHHHHHHHHc
Confidence 78999876544678888899999999999998874
No 97
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=27.42 E-value=89 Score=24.16 Aligned_cols=40 Identities=23% Similarity=0.244 Sum_probs=24.5
Q ss_pred CCCeEEEEEeCcCcHH---HHHHHHHhhhhc-CCCeEEEecccC
Q 022952 13 NPTEVLLVVDAMTGQE---AAALVTTFNIEI-GITGAILTKLDG 52 (289)
Q Consensus 13 ~P~ev~LVldAttgqd---a~~~a~~F~~~v-~i~gvIlTKlDe 52 (289)
..+-++||+|++.+.. +......+.... .+--+|+||+|.
T Consensus 116 ~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~piilv~NK~D~ 159 (208)
T 3clv_A 116 GATCAIVVFDISNSNTLDRAKTWVNQLKISSNYIIILVANKIDK 159 (208)
T ss_dssp TCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCCEEEEEEECTTC
T ss_pred CCCEEEEEEECCCHHHHHHHHHHHHHHHhhCCCcEEEEEECCCc
Confidence 4678999999998852 222233333211 344688899993
No 98
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=27.36 E-value=90 Score=29.22 Aligned_cols=42 Identities=19% Similarity=0.202 Sum_probs=26.4
Q ss_pred hCCCeEEEEEeCcCcH--HHHHHHHHhhhhcCCC--eEEEecccCCC
Q 022952 12 LNPTEVLLVVDAMTGQ--EAAALVTTFNIEIGIT--GAILTKLDGDS 54 (289)
Q Consensus 12 ~~P~ev~LVldAttgq--da~~~a~~F~~~v~i~--gvIlTKlDeta 54 (289)
...+-++||+||+.|. ...+...... .+++. -+++||+|...
T Consensus 126 ~~aD~~ilVvDa~~g~~~qt~~~l~~~~-~~~~~~iIvviNK~Dl~~ 171 (434)
T 1zun_B 126 STCDLAIILVDARYGVQTQTRRHSYIAS-LLGIKHIVVAINKMDLNG 171 (434)
T ss_dssp TTCSEEEEEEETTTCSCHHHHHHHHHHH-HTTCCEEEEEEECTTTTT
T ss_pred hhCCEEEEEEECCCCCcHHHHHHHHHHH-HcCCCeEEEEEEcCcCCc
Confidence 4678999999999873 2222222222 24543 45699999753
No 99
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=27.35 E-value=73 Score=29.50 Aligned_cols=40 Identities=18% Similarity=0.160 Sum_probs=24.5
Q ss_pred hCCCeEEEEEeCcCc--H-HHHHHHHHhhhhcCCC--eEEEecccC
Q 022952 12 LNPTEVLLVVDAMTG--Q-EAAALVTTFNIEIGIT--GAILTKLDG 52 (289)
Q Consensus 12 ~~P~ev~LVldAttg--q-da~~~a~~F~~~v~i~--gvIlTKlDe 52 (289)
...|-++||+||+.| + ...+.+..... +++. -+++||+|.
T Consensus 105 ~~~D~~ilVvda~~g~~~~qt~e~l~~~~~-~~~~~iivviNK~Dl 149 (410)
T 1kk1_A 105 SLMDGAILVIAANEPCPRPQTREHLMALQI-IGQKNIIIAQNKIEL 149 (410)
T ss_dssp GGCSEEEEEEETTSCSSCHHHHHHHHHHHH-HTCCCEEEEEECGGG
T ss_pred hhCCEEEEEEECCCCCCChhHHHHHHHHHH-cCCCcEEEEEECccC
Confidence 357889999999965 2 33333333332 3432 355899997
No 100
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=26.91 E-value=66 Score=30.67 Aligned_cols=41 Identities=20% Similarity=0.267 Sum_probs=25.8
Q ss_pred hCCCeEEEEEeCcCcH---------HHHHHHHHhhhhcCCC--eEEEecccCC
Q 022952 12 LNPTEVLLVVDAMTGQ---------EAAALVTTFNIEIGIT--GAILTKLDGD 53 (289)
Q Consensus 12 ~~P~ev~LVldAttgq---------da~~~a~~F~~~v~i~--gvIlTKlDet 53 (289)
...|-++||+||+.|. ...+.+.... ..++. -+++||+|..
T Consensus 143 ~~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l~~~~-~~~vp~iivviNK~Dl~ 194 (467)
T 1r5b_A 143 SQADIGVLVISARRGEFEAGFERGGQTREHAVLAR-TQGINHLVVVINKMDEP 194 (467)
T ss_dssp TSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHH-HTTCSSEEEEEECTTST
T ss_pred ccCCEEEEEEeCCcCccccccCCCCcHHHHHHHHH-HcCCCEEEEEEECccCC
Confidence 3578899999999872 1222222222 24554 4679999984
No 101
>1byi_A Dethiobiotin synthase; biotin synthesis, cyclo-ligase, ligase; 0.97A {Escherichia coli} SCOP: c.37.1.10 PDB: 1bs1_A* 1a82_A 1dad_A* 1dae_A* 1daf_A* 1dag_A* 1dah_A* 1dai_A* 1dak_A* 1dam_A* 1dbs_A 1dts_A
Probab=26.76 E-value=91 Score=25.46 Aligned_cols=56 Identities=14% Similarity=0.243 Sum_probs=34.5
Q ss_pred CeEEEEEeCcCcH--HHHHHHHHhh-hhcCCCeEEEecccCCCCC-Cccccc-eeccCCCe
Q 022952 15 TEVLLVVDAMTGQ--EAAALVTTFN-IEIGITGAILTKLDGDSRG-GAALSV-KEVSGKPI 70 (289)
Q Consensus 15 ~ev~LVldAttgq--da~~~a~~F~-~~v~i~gvIlTKlDetarg-G~aLS~-~~~t~~PI 70 (289)
..+++|+++..+. ++...++.+. ..+++-|+|+|++|..... ...+.. ...++.|+
T Consensus 139 ~~vi~v~~~~~~~~~~~~~~i~~l~~~~~~i~gvvlN~~~~~~~~~~~~~~~l~~~~~~~v 199 (224)
T 1byi_A 139 LPVILVVGVKLGCINHAMLTAQVIQHAGLTLAGWVANDVTPPGKRHAEYMTTLTRMIPAPL 199 (224)
T ss_dssp CCEEEEEECSTTHHHHHHHHHHHHHHTTCCEEEEEEECCSSCCTTHHHHHHHHHHHSSSCE
T ss_pred CCEEEEecCCCCcHHHHHHHHHHHHHCCCcEEEEEEeCCCCchhhHHHHHHHHHHHcCCCE
Confidence 3588999886654 5555555553 3467889999999975432 222222 23356675
No 102
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=26.73 E-value=70 Score=24.74 Aligned_cols=42 Identities=19% Similarity=0.163 Sum_probs=24.3
Q ss_pred CCCeEEEEEeCcCcH---HHHHHHHHhhhhc----CCCeEEEecccCCC
Q 022952 13 NPTEVLLVVDAMTGQ---EAAALVTTFNIEI----GITGAILTKLDGDS 54 (289)
Q Consensus 13 ~P~ev~LVldAttgq---da~~~a~~F~~~v----~i~gvIlTKlDeta 54 (289)
..+-++||+|++... ++......+.... .+--+|+||+|...
T Consensus 85 ~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 133 (183)
T 1moz_A 85 DTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPG 133 (183)
T ss_dssp TEEEEEEEEETTCTTTHHHHHHHHHHHTTSSTTSSCEEEEEEECTTSTT
T ss_pred cCCEEEEEEECCCHHHHHHHHHHHHHHHcChhhCCCeEEEEEECCCCCC
Confidence 346789999998774 2333333332210 12357888998643
No 103
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=26.54 E-value=1.1e+02 Score=23.46 Aligned_cols=41 Identities=15% Similarity=0.103 Sum_probs=24.4
Q ss_pred CCCeEEEEEeCcCcHH---HHHHHHHhhhhcC---CCeEEEecccCC
Q 022952 13 NPTEVLLVVDAMTGQE---AAALVTTFNIEIG---ITGAILTKLDGD 53 (289)
Q Consensus 13 ~P~ev~LVldAttgqd---a~~~a~~F~~~v~---i~gvIlTKlDet 53 (289)
..+-++||+|++.... +......+..... +--+|+||+|..
T Consensus 84 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~ 130 (181)
T 2efe_B 84 GAAAAIIVFDVTNQASFERAKKWVQELQAQGNPNMVMALAGNKSDLL 130 (181)
T ss_dssp TCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCT
T ss_pred cCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCccc
Confidence 4678999999987752 2233333333111 124677999874
No 104
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=26.22 E-value=93 Score=29.18 Aligned_cols=41 Identities=22% Similarity=0.327 Sum_probs=24.8
Q ss_pred CCCeEEEEEeCcCcH-H--------HHHHHHHhhhhcCC--CeEEEecccCCC
Q 022952 13 NPTEVLLVVDAMTGQ-E--------AAALVTTFNIEIGI--TGAILTKLDGDS 54 (289)
Q Consensus 13 ~P~ev~LVldAttgq-d--------a~~~a~~F~~~v~i--~gvIlTKlDeta 54 (289)
..|-++||+||+.|. + ..+.+.... .+++ =-+++||+|...
T Consensus 107 ~aD~~ilVvDa~~gsfe~~~~~~~qt~~~~~~~~-~~~~~~iivviNK~Dl~~ 158 (435)
T 1jny_A 107 QADAAILVVSAKKGEYEAGMSVEGQTREHIILAK-TMGLDQLIVAVNKMDLTE 158 (435)
T ss_dssp CCSEEEEEEECSTTHHHHHHSTTCHHHHHHHHHH-HTTCTTCEEEEECGGGSS
T ss_pred hcCEEEEEEECCCCccccccccchHHHHHHHHHH-HcCCCeEEEEEEcccCCC
Confidence 568899999999872 1 111111111 1343 347799999754
No 105
>2e7p_A Glutaredoxin; thioredoxin fold, poplar, electron transport; HET: GSH; 2.10A {Populus tremula x populus tremuloides} PDB: 1z7p_A 1z7r_A
Probab=26.08 E-value=26 Score=25.72 Aligned_cols=67 Identities=13% Similarity=0.164 Sum_probs=37.8
Q ss_pred HHhCCCeEEEEEeCcCcHHHHHHHHHhhhhcCCCeEEEecccCCCCC----CccccceeccCCCeEEEecCCCCC
Q 022952 10 RVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRG----GAALSVKEVSGKPIKLVGRGERME 80 (289)
Q Consensus 10 ~~~~P~ev~LVldAttgqda~~~a~~F~~~v~i~gvIlTKlDetarg----G~aLS~~~~t~~PI~FIgtGQkVd 80 (289)
+.++... ++|.-+..-..+......|.. ++.. +.+-++|.+... ..+.......+.|..|+ .|+.+.
T Consensus 15 ~~~~~~~-vv~f~a~~C~~C~~~~~~l~~-~~~~-~~~v~v~~~~~~~~~~~~l~~~~~v~~~Pt~~~-~g~~v~ 85 (116)
T 2e7p_A 15 ELASSAP-VVVFSKTYCGYCNRVKQLLTQ-VGAS-YKVVELDELSDGSQLQSALAHWTGRGTVPNVFI-GGKQIG 85 (116)
T ss_dssp HHHTSSS-EEEEECTTCHHHHHHHHHHHH-HTCC-CEEEEGGGSTTHHHHHHHHHHHHSCCSSCEEEE-TTEEEE
T ss_pred HHHcCCC-EEEEECCCChhHHHHHHHHHH-cCCC-eEEEEccCCCChHHHHHHHHHHhCCCCcCEEEE-CCEEEC
Confidence 3344444 445888777766666666655 4444 345567765531 11222233468899977 576553
No 106
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=25.94 E-value=1.2e+02 Score=22.81 Aligned_cols=41 Identities=15% Similarity=0.101 Sum_probs=22.9
Q ss_pred CCCeEEEEEeCcCcHH---HHHHHHHhhhhcCCC---eEEEecccCC
Q 022952 13 NPTEVLLVVDAMTGQE---AAALVTTFNIEIGIT---GAILTKLDGD 53 (289)
Q Consensus 13 ~P~ev~LVldAttgqd---a~~~a~~F~~~v~i~---gvIlTKlDet 53 (289)
..+-++||+|++.... +......+....... -+|.||+|..
T Consensus 78 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~Dl~ 124 (170)
T 1r2q_A 78 GAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLA 124 (170)
T ss_dssp TCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGG
T ss_pred CCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCc
Confidence 4688999999988752 222233333211112 2334999963
No 107
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=25.91 E-value=1.1e+02 Score=22.98 Aligned_cols=41 Identities=12% Similarity=0.041 Sum_probs=23.1
Q ss_pred CCCeEEEEEeCcCcHH---HHHHHHHhhhhcCCC---eEEEecccCC
Q 022952 13 NPTEVLLVVDAMTGQE---AAALVTTFNIEIGIT---GAILTKLDGD 53 (289)
Q Consensus 13 ~P~ev~LVldAttgqd---a~~~a~~F~~~v~i~---gvIlTKlDet 53 (289)
..+-+++|+|++.... +......+...-... -+|.||+|..
T Consensus 78 ~~~~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~ 124 (170)
T 1z0j_A 78 GSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLT 124 (170)
T ss_dssp TCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTSEEEEEEECTTCG
T ss_pred CCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECCccc
Confidence 4578999999988752 222333333211112 2445999974
No 108
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=25.89 E-value=91 Score=24.56 Aligned_cols=42 Identities=14% Similarity=0.028 Sum_probs=23.0
Q ss_pred CCCeEEEEEeCcCcHH---HHHHHHHhhhhcC------CCeEEEecccCCC
Q 022952 13 NPTEVLLVVDAMTGQE---AAALVTTFNIEIG------ITGAILTKLDGDS 54 (289)
Q Consensus 13 ~P~ev~LVldAttgqd---a~~~a~~F~~~v~------i~gvIlTKlDeta 54 (289)
..+-++||+|++.... +......+....+ +--+|+||+|...
T Consensus 96 ~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~ 146 (208)
T 2yc2_C 96 GVYYAILVFDVSSMESFESCKAWFELLKSARPDRERPLRAVLVANKTDLPP 146 (208)
T ss_dssp CCCEEEEEEETTCHHHHHHHHHHHHHHHHHCSCTTSCCEEEEEEECC----
T ss_pred hCcEEEEEEECCCHHHHHHHHHHHHHHHHhhcccccCCcEEEEEECcccch
Confidence 3577999999988752 2223333332111 2357889999743
No 109
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=25.78 E-value=89 Score=24.09 Aligned_cols=41 Identities=15% Similarity=0.089 Sum_probs=23.8
Q ss_pred CCCeEEEEEeCcCcHHH---HHHHHHhhhhc----CCCeEEEecccCC
Q 022952 13 NPTEVLLVVDAMTGQEA---AALVTTFNIEI----GITGAILTKLDGD 53 (289)
Q Consensus 13 ~P~ev~LVldAttgqda---~~~a~~F~~~v----~i~gvIlTKlDet 53 (289)
..+-++||+|++..... ......+.... .+--+|+||+|..
T Consensus 93 ~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~ 140 (195)
T 3bc1_A 93 DAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSENPDIVLCGNKSDLE 140 (195)
T ss_dssp TCSEEEEEEETTCHHHHHTHHHHHHHHHHHSSSSSCCEEEEEECTTCG
T ss_pred CCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccc
Confidence 46789999999877532 22223222211 1235778888863
No 110
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=25.53 E-value=1.1e+02 Score=24.11 Aligned_cols=41 Identities=12% Similarity=0.036 Sum_probs=24.5
Q ss_pred CCCeEEEEEeCcCcHH---HHHHHHHhhhhc---CCCeEEEecccCC
Q 022952 13 NPTEVLLVVDAMTGQE---AAALVTTFNIEI---GITGAILTKLDGD 53 (289)
Q Consensus 13 ~P~ev~LVldAttgqd---a~~~a~~F~~~v---~i~gvIlTKlDet 53 (289)
..+-++||+|++.... +......+.... .+--+|+||+|..
T Consensus 95 ~~d~iilV~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~ 141 (192)
T 2fg5_A 95 GSAAAVIVYDITKQDSFYTLKKWVKELKEHGPENIVMAIAGNKCDLS 141 (192)
T ss_dssp TCSEEEEEEETTCTHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGG
T ss_pred cCCEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccc
Confidence 4678999999988752 222333333211 1224778999974
No 111
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=25.45 E-value=53 Score=25.35 Aligned_cols=40 Identities=13% Similarity=-0.139 Sum_probs=23.3
Q ss_pred CCCeEEEEEeCcCcHH---HHHHHHHhhhhc----CCCeEEEecccC
Q 022952 13 NPTEVLLVVDAMTGQE---AAALVTTFNIEI----GITGAILTKLDG 52 (289)
Q Consensus 13 ~P~ev~LVldAttgqd---a~~~a~~F~~~v----~i~gvIlTKlDe 52 (289)
..+-+++|+|++.... +......+.... -+--+|+||+|.
T Consensus 89 ~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl 135 (187)
T 2a9k_A 89 SGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDL 135 (187)
T ss_dssp HCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCCTTCCEEEEEECGGG
T ss_pred cCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccc
Confidence 4678999999987652 222222222211 122578899996
No 112
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=25.25 E-value=87 Score=24.56 Aligned_cols=41 Identities=17% Similarity=0.045 Sum_probs=24.1
Q ss_pred CCCeEEEEEeCcCcH---HHHHHHHHhhhh----cCCCeEEEecccCC
Q 022952 13 NPTEVLLVVDAMTGQ---EAAALVTTFNIE----IGITGAILTKLDGD 53 (289)
Q Consensus 13 ~P~ev~LVldAttgq---da~~~a~~F~~~----v~i~gvIlTKlDet 53 (289)
+.+-++||+|++... ++......+... -.+--+|+||+|..
T Consensus 83 ~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~ 130 (187)
T 1zj6_A 83 NTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVK 130 (187)
T ss_dssp TCCEEEEEEETTCTTTHHHHHHHHHHHHTSGGGTTCEEEEEEECTTST
T ss_pred CCCEEEEEEeCCCHHHHHHHHHHHHHHHhchhhCCCeEEEEEECCCCc
Confidence 567899999999874 233333333221 11235778888864
No 113
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=24.95 E-value=58 Score=24.44 Aligned_cols=40 Identities=15% Similarity=-0.010 Sum_probs=23.3
Q ss_pred CCCeEEEEEeCcCcHH---HHHHHHHhhhhc----CCCeEEEecccC
Q 022952 13 NPTEVLLVVDAMTGQE---AAALVTTFNIEI----GITGAILTKLDG 52 (289)
Q Consensus 13 ~P~ev~LVldAttgqd---a~~~a~~F~~~v----~i~gvIlTKlDe 52 (289)
..+-+++|+|++.... +......+.... .+--+|+||+|.
T Consensus 74 ~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl 120 (167)
T 1kao_A 74 NGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDL 120 (167)
T ss_dssp HCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECGGG
T ss_pred cCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcc
Confidence 3578999999998652 222222222211 123577888885
No 114
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=24.70 E-value=94 Score=28.78 Aligned_cols=40 Identities=20% Similarity=0.225 Sum_probs=24.7
Q ss_pred CCCeEEEEEeCcCc---HHHHHHHHHhhhhcCC--CeEEEecccCC
Q 022952 13 NPTEVLLVVDAMTG---QEAAALVTTFNIEIGI--TGAILTKLDGD 53 (289)
Q Consensus 13 ~P~ev~LVldAttg---qda~~~a~~F~~~v~i--~gvIlTKlDet 53 (289)
..|-++||+||+.| ....+.+..+.. +++ --+++||+|..
T Consensus 104 ~~D~~ilVvda~~g~~~~qt~e~l~~~~~-l~~~~iivv~NK~Dl~ 148 (408)
T 1s0u_A 104 LMDGAILVIAANEPCPQPQTKEHLMALEI-LGIDKIIIVQNKIDLV 148 (408)
T ss_dssp CCSEEEEEEETTSCSSCHHHHHHHHHHHH-TTCCCEEEEEECTTSS
T ss_pred hCCEEEEEEECCCCCCCchhHHHHHHHHH-cCCCeEEEEEEccCCC
Confidence 46889999999954 133333333332 443 24778999974
No 115
>1hyq_A MIND, cell division inhibitor (MIND-1); MINC, FTSZ, bacterial cell division, cell cycle; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.10
Probab=24.69 E-value=38 Score=28.68 Aligned_cols=57 Identities=12% Similarity=0.157 Sum_probs=34.6
Q ss_pred CCeEEEEEeCcCcH--HHHHHHHHhhh-hcCCCeEEEecccCCCCCCccccceeccCCCe
Q 022952 14 PTEVLLVVDAMTGQ--EAAALVTTFNI-EIGITGAILTKLDGDSRGGAALSVKEVSGKPI 70 (289)
Q Consensus 14 P~ev~LVldAttgq--da~~~a~~F~~-~v~i~gvIlTKlDetargG~aLS~~~~t~~PI 70 (289)
.|.+++|+.+.... ++....+.+.. .+.+-++|+|++|.......+-.+....+.|+
T Consensus 133 ad~vi~v~~~~~~~~~~~~~~~~~l~~~~~~~~~vv~N~~~~~~~~~~~~~~~~~~~~~~ 192 (263)
T 1hyq_A 133 AQELLLVVNPEISSITDGLKTKIVAERLGTKVLGVVVNRITTLGIEMAKNEIEAILEAKV 192 (263)
T ss_dssp SSEEEEEECSSHHHHHHHHHHHHHHHHHTCEEEEEEEEEECTTTHHHHHHHHHHHTTSCE
T ss_pred CCEEEEEeCCChhHHHHHHHHHHHHHhcCCCeeEEEEccCCcccccchHHHHHHHhCCCe
Confidence 46888888877554 44444444443 24677999999998655422223333456664
No 116
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=24.59 E-value=1.2e+02 Score=24.35 Aligned_cols=39 Identities=18% Similarity=0.055 Sum_probs=22.4
Q ss_pred CCCeEEEEEeCcCcHHHHHHHHHhhhhcC--------CCeEEEecccC
Q 022952 13 NPTEVLLVVDAMTGQEAAALVTTFNIEIG--------ITGAILTKLDG 52 (289)
Q Consensus 13 ~P~ev~LVldAttgqda~~~a~~F~~~v~--------i~gvIlTKlDe 52 (289)
..+-++||+|++......++..-+.. +. +--+|+||+|.
T Consensus 107 ~~d~iilV~D~~~~~s~~~~~~~l~~-i~~~~~~~~~piilV~NK~Dl 153 (217)
T 2f7s_A 107 DAMGFLLMFDLTSQQSFLNVRNWMSQ-LQANAYCENPDIVLIGNKADL 153 (217)
T ss_dssp TCCEEEEEEETTCHHHHHHHHHHHHT-CCCCCTTTCCEEEEEEECTTC
T ss_pred CCCEEEEEEECcCHHHHHHHHHHHHH-HHHhcCcCCCCEEEEEECCcc
Confidence 46789999999887643332222221 21 12466777776
No 117
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=24.54 E-value=10 Score=35.82 Aligned_cols=69 Identities=16% Similarity=0.297 Sum_probs=38.7
Q ss_pred CCCeEEEEEeCcCcHHHHHHHHHhh-----hhcCCCeEEEecccCCCCCC-----ccccceeccCCCeEEEe--cCCCCC
Q 022952 13 NPTEVLLVVDAMTGQEAAALVTTFN-----IEIGITGAILTKLDGDSRGG-----AALSVKEVSGKPIKLVG--RGERME 80 (289)
Q Consensus 13 ~P~ev~LVldAttgqda~~~a~~F~-----~~v~i~gvIlTKlDetargG-----~aLS~~~~t~~PI~FIg--tGQkVd 80 (289)
+-|.++ +|+|..-.-..+.+++|- ...++ -+||||+|....-- ..+......|.|+.|+. +|+.++
T Consensus 130 nvD~v~-iv~a~~P~~~~~~i~r~L~~a~~~~~~~-iivlNK~DL~~~~~~~~~~~~~~~y~~~G~~v~~~Sa~~~~gl~ 207 (358)
T 2rcn_A 130 NIDQIV-IVSAILPELSLNIIDRYLVGCETLQVEP-LIVLNKIDLLDDEGMDFVNEQMDIYRNIGYRVLMVSSHTQDGLK 207 (358)
T ss_dssp CCCEEE-EEEESTTTCCHHHHHHHHHHHHHHTCEE-EEEEECGGGCCHHHHHHHHHHHHHHHTTTCCEEECBTTTTBTHH
T ss_pred cCCEEE-EEEeCCCCCCHHHHHHHHHHHHhcCCCE-EEEEECccCCCchhHHHHHHHHHHHHhCCCcEEEEecCCCcCHH
Confidence 344455 556654321222444442 22455 78999999865432 13344446788998886 566665
Q ss_pred CCC
Q 022952 81 DLE 83 (289)
Q Consensus 81 DLe 83 (289)
+|.
T Consensus 208 ~L~ 210 (358)
T 2rcn_A 208 PLE 210 (358)
T ss_dssp HHH
T ss_pred HHH
Confidence 554
No 118
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=24.37 E-value=1e+02 Score=28.40 Aligned_cols=40 Identities=23% Similarity=0.204 Sum_probs=25.2
Q ss_pred hCCCeEEEEEeCcCcH---HHHHHHHHhhhhcCC--CeEEEecccC
Q 022952 12 LNPTEVLLVVDAMTGQ---EAAALVTTFNIEIGI--TGAILTKLDG 52 (289)
Q Consensus 12 ~~P~ev~LVldAttgq---da~~~a~~F~~~v~i--~gvIlTKlDe 52 (289)
...|-++||+||+.+. ...+....... +++ --+++||+|.
T Consensus 97 ~~~D~~ilVvda~~~~~~~qt~~~~~~~~~-~~~~~iivviNK~Dl 141 (403)
T 3sjy_A 97 ALMDGAILVVAANEPFPQPQTREHFVALGI-IGVKNLIIVQNKVDV 141 (403)
T ss_dssp TTCSEEEEEEETTSCSSCHHHHHHHHHHHH-HTCCCEEEEEECGGG
T ss_pred hhCCEEEEEEECCCCCCcHHHHHHHHHHHH-cCCCCEEEEEECccc
Confidence 4578899999999763 33333333322 333 3567899996
No 119
>2d7u_A Adenylosuccinate synthetase; structural genomics, conserved hypothetical protein, NPPSFA; 2.50A {Pyrococcus horikoshii}
Probab=24.20 E-value=60 Score=30.79 Aligned_cols=41 Identities=32% Similarity=0.481 Sum_probs=28.5
Q ss_pred CCCeEEEecccCCCC---CC---ccc---------cceeccCCCeEEEecCCCCCC
Q 022952 41 GITGAILTKLDGDSR---GG---AAL---------SVKEVSGKPIKLVGRGERMED 81 (289)
Q Consensus 41 ~i~gvIlTKlDetar---gG---~aL---------S~~~~t~~PI~FIgtGQkVdD 81 (289)
+++++.+||+|--.. +- .-| -+-...++||.||++|..-++
T Consensus 276 g~t~lalTkLDvLd~~~~~~~~~~~LP~~a~~yi~~iEe~~gvpv~~is~GP~r~~ 331 (339)
T 2d7u_A 276 GATMLAVTMLDKYDKEAFGVTDYDKLPRKAKEFIEEIEERVGVPVGLIKTGPELEH 331 (339)
T ss_dssp TCSEEEEECGGGTCGGGTTCCSGGGSCHHHHHHHHHHHHHHSSCEEEEECSSBSSC
T ss_pred CCCeEEEEcccccCCccccceehHHCCHHHHHHHHHHHHHHCCCEEEEEeCCChHH
Confidence 699999999996331 10 111 123456889999999998876
No 120
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=24.14 E-value=94 Score=25.58 Aligned_cols=42 Identities=14% Similarity=0.055 Sum_probs=24.9
Q ss_pred CCCeEEEEEeCcCcH-----HHHHHHHHhhhh--cCCCeEEEecccCCC
Q 022952 13 NPTEVLLVVDAMTGQ-----EAAALVTTFNIE--IGITGAILTKLDGDS 54 (289)
Q Consensus 13 ~P~ev~LVldAttgq-----da~~~a~~F~~~--v~i~gvIlTKlDeta 54 (289)
..+-++||+|++... ........+... -.+--+|+||+|...
T Consensus 108 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~ 156 (228)
T 2qu8_A 108 INGVILFIIDISEQCGLTIKEQINLFYSIKSVFSNKSIVIGFNKIDKCN 156 (228)
T ss_dssp SSEEEEEEEETTCTTSSCHHHHHHHHHHHHTCC-CCCEEEEEECGGGCC
T ss_pred cccEEEEEEecccccCcchHHHHHHHHHHHHhhcCCcEEEEEeCcccCC
Confidence 446799999998753 122334444331 123467889999743
No 121
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=23.77 E-value=1.1e+02 Score=23.42 Aligned_cols=42 Identities=17% Similarity=0.114 Sum_probs=24.3
Q ss_pred CCCeEEEEEeCcCcHHH---HHHHHHhhhhc---CCCeEEEecccCCC
Q 022952 13 NPTEVLLVVDAMTGQEA---AALVTTFNIEI---GITGAILTKLDGDS 54 (289)
Q Consensus 13 ~P~ev~LVldAttgqda---~~~a~~F~~~v---~i~gvIlTKlDeta 54 (289)
..+-++||+|++..... ......+.... -+--+|+||+|...
T Consensus 83 ~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~ 130 (180)
T 2g6b_A 83 DAHALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKVDSAH 130 (180)
T ss_dssp GCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECCSTTS
T ss_pred CCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccCc
Confidence 45779999999987532 22222222211 12247789999743
No 122
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=23.67 E-value=1.4e+02 Score=23.04 Aligned_cols=41 Identities=12% Similarity=0.071 Sum_probs=21.9
Q ss_pred CCCeEEEEEeCcCcHHH---HHHHHHhhhhc---CCCeEEEecccCC
Q 022952 13 NPTEVLLVVDAMTGQEA---AALVTTFNIEI---GITGAILTKLDGD 53 (289)
Q Consensus 13 ~P~ev~LVldAttgqda---~~~a~~F~~~v---~i~gvIlTKlDet 53 (289)
..+-++||+|++..... ......+.... .+--+|+||+|..
T Consensus 80 ~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~ 126 (183)
T 2fu5_C 80 GAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVN 126 (183)
T ss_dssp TCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEEC--CC
T ss_pred cCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECccCC
Confidence 45779999999887522 22223332211 1225778888864
No 123
>1f0k_A MURG, UDP-N-acetylglucosamine-N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol...; rossmann fold, transferase; 1.90A {Escherichia coli} SCOP: c.87.1.2 PDB: 1nlm_A*
Probab=23.56 E-value=53 Score=28.55 Aligned_cols=84 Identities=13% Similarity=0.116 Sum_probs=49.0
Q ss_pred CCccccceeccCCCeEEEecCCCCCCCCCCChhHHHH----HhhCCCc--hhHHHHHHHHhccHHHHHHHHHHHHh--CC
Q 022952 56 GGAALSVKEVSGKPIKLVGRGERMEDLEPFYPDRMAG----RILGMGD--VLSFVEKAQEVMQQEDAEEMQKKIMS--AN 127 (289)
Q Consensus 56 gG~aLS~~~~t~~PI~FIgtGQkVdDLe~f~p~~la~----rlLG~gD--i~sLvEk~~~~~~~~~~~~~~~k~~~--g~ 127 (289)
||..+-=+...|+|+.....|-- .+-+.++++.++. .+...+| ...|.+.+... +.+..+++.++-.+ ..
T Consensus 263 g~~~~~EAma~G~Pvi~~~~~g~-~~~q~~~~~~~~~~g~g~~~~~~d~~~~~la~~i~~l-~~~~~~~~~~~~~~~~~~ 340 (364)
T 1f0k_A 263 GALTVSEIAAAGLPALFVPFQHK-DRQQYWNALPLEKAGAAKIIEQPQLSVDAVANTLAGW-SRETLLTMAERARAASIP 340 (364)
T ss_dssp CHHHHHHHHHHTCCEEECCCCCT-TCHHHHHHHHHHHTTSEEECCGGGCCHHHHHHHHHTC-CHHHHHHHHHHHHHTCCT
T ss_pred chHHHHHHHHhCCCEEEeeCCCC-chhHHHHHHHHHhCCcEEEeccccCCHHHHHHHHHhc-CHHHHHHHHHHHHHhhcc
Confidence 45666667778999988765421 1212222333332 2344566 78888888877 66655555444332 36
Q ss_pred cChHHHHHHHHHHH
Q 022952 128 FDFNDFLKQTRTVA 141 (289)
Q Consensus 128 F~l~Df~~Q~~~i~ 141 (289)
|+.+.+.+++..+.
T Consensus 341 ~~~~~~~~~~~~~y 354 (364)
T 1f0k_A 341 DATERVANEVSRVA 354 (364)
T ss_dssp THHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH
Confidence 77777777766543
No 124
>1k2h_A S100A1, S-100 protein, alpha chain; non-covalent homodimer, X-type four-helix bundle, metal binding protein; NMR {Rattus norvegicus} SCOP: a.39.1.2 PDB: 1zfs_A 2k2f_A 2kbm_A 2l0p_A 2jpt_A
Probab=23.56 E-value=1.3e+02 Score=20.82 Aligned_cols=32 Identities=13% Similarity=0.360 Sum_probs=22.1
Q ss_pred ccHHHHHHHHHHHH---hCCcChHHHHHHHHHHHh
Q 022952 111 MQQEDAEEMQKKIM---SANFDFNDFLKQTRTVAR 142 (289)
Q Consensus 111 ~~~~~~~~~~~k~~---~g~F~l~Df~~Q~~~i~k 142 (289)
..+++..++...+- .|..++++|+.-+..+.+
T Consensus 49 ~~~~~~~~~~~~~D~d~dg~i~~~eF~~~~~~~~~ 83 (93)
T 1k2h_A 49 KDADAVDKIMKELDENGDGEVDFQEFVVLVAALTV 83 (93)
T ss_dssp CCHHHHHHHHHHHHHCTTSCCCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHHHH
Confidence 34555566666553 578999999998876543
No 125
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=23.43 E-value=1.1e+02 Score=24.01 Aligned_cols=41 Identities=20% Similarity=0.066 Sum_probs=24.0
Q ss_pred CCCeEEEEEeCcCcHHHH---HHHHHhhhhc---CCCeEEEecccCC
Q 022952 13 NPTEVLLVVDAMTGQEAA---ALVTTFNIEI---GITGAILTKLDGD 53 (289)
Q Consensus 13 ~P~ev~LVldAttgqda~---~~a~~F~~~v---~i~gvIlTKlDet 53 (289)
..+-++||+|++...... .....+.... .+--+|+||+|..
T Consensus 97 ~~d~vi~v~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~ 143 (193)
T 2oil_A 97 GAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGNKSDLS 143 (193)
T ss_dssp TCCEEEEEEETTCHHHHHTHHHHHHHHHTTSCTTCEEEEEEECGGGG
T ss_pred cCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECCCcc
Confidence 457799999998875322 2222222211 1235788999974
No 126
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=23.40 E-value=1e+02 Score=24.40 Aligned_cols=41 Identities=15% Similarity=0.119 Sum_probs=24.1
Q ss_pred CCCeEEEEEeCcCcHHHHH---HHHHhhhhc---CCCeEEEecccCC
Q 022952 13 NPTEVLLVVDAMTGQEAAA---LVTTFNIEI---GITGAILTKLDGD 53 (289)
Q Consensus 13 ~P~ev~LVldAttgqda~~---~a~~F~~~v---~i~gvIlTKlDet 53 (289)
..+-++||+|++......+ ....+.... -+--+|+||+|..
T Consensus 98 ~~d~iilV~D~~~~~s~~~~~~~~~~i~~~~~~~~piilV~NK~Dl~ 144 (192)
T 2il1_A 98 SAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCE 144 (192)
T ss_dssp HCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGG
T ss_pred CCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccc
Confidence 4678999999998763221 122222211 1235788999964
No 127
>3m9j_A Thioredoxin; oxidoreductase; 1.10A {Homo sapiens} SCOP: c.47.1.1 PDB: 3m9k_A 2hsh_A 1erv_A 2ifq_A 2ifq_B 1auc_A 1eru_A 1ert_A 3kd0_A 1aiu_A 3trx_A 4trx_A 1trs_A 1tru_A 1trv_A 1trw_A 3e3e_A* 1cqg_A 1cqh_A 1mdi_A ...
Probab=23.32 E-value=1.2e+02 Score=21.06 Aligned_cols=88 Identities=11% Similarity=0.169 Sum_probs=47.4
Q ss_pred HHHHHHHHHhCCCeEEEEEeCcCcHHHHH---HHHHhhhhcCCCeEEEecccCCCCCCccccceeccCCCeEE-EecCCC
Q 022952 3 DELKDVKRVLNPTEVLLVVDAMTGQEAAA---LVTTFNIEIGITGAILTKLDGDSRGGAALSVKEVSGKPIKL-VGRGER 78 (289)
Q Consensus 3 ~ELk~i~~~~~P~ev~LVldAttgqda~~---~a~~F~~~v~i~gvIlTKlDetargG~aLS~~~~t~~PI~F-IgtGQk 78 (289)
+++.+.....+..-+++..-+..-..+.. ..+.+.... .++.+-++|-+... .+..-....+.|-.+ +-.|+.
T Consensus 9 ~~~~~~l~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~--~~~~~~~vd~~~~~-~~~~~~~v~~~Pt~~~~~~g~~ 85 (105)
T 3m9j_A 9 TAFQEALDAAGDKLVVVDFSATWCGPCKMIKPFFHSLSEKY--SNVIFLEVDVDDCQ-DVASESEVKSMPTFQFFKKGQK 85 (105)
T ss_dssp HHHHHHHHHTTTSCEEEEEECTTCHHHHHHHHHHHHHHHHS--TTSEEEEEETTTCH-HHHHHTTCCBSSEEEEEETTEE
T ss_pred HHHHHHHHhcCCCeEEEEEECCCChhhHHHHHHHHHHHHHc--cCeEEEEEEhhhhH-HHHHHcCCCcCcEEEEEECCeE
Confidence 34555555444555666677776654443 334443322 33777788876432 233333456778544 366776
Q ss_pred CCCCCCCChhHHHHH
Q 022952 79 MEDLEPFYPDRMAGR 93 (289)
Q Consensus 79 VdDLe~f~p~~la~r 93 (289)
+..+.-++++.+...
T Consensus 86 ~~~~~g~~~~~l~~~ 100 (105)
T 3m9j_A 86 VGEFSGANKEKLEAT 100 (105)
T ss_dssp EEEEESSCHHHHHHH
T ss_pred EEEEeCCCHHHHHHH
Confidence 655554455555443
No 128
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=23.27 E-value=1.1e+02 Score=28.46 Aligned_cols=43 Identities=14% Similarity=0.173 Sum_probs=25.9
Q ss_pred CCCeEEEEEeCcCcH-HH-HHHHHHhhhhcCCCeEEEecccCCCC
Q 022952 13 NPTEVLLVVDAMTGQ-EA-AALVTTFNIEIGITGAILTKLDGDSR 55 (289)
Q Consensus 13 ~P~ev~LVldAttgq-da-~~~a~~F~~~v~i~gvIlTKlDetar 55 (289)
..+-++||+|++.|. .. ..+++.....--+--+|+||+|....
T Consensus 82 ~ad~il~vvD~~~~~~~~d~~~~~~l~~~~~pvilv~NK~D~~~~ 126 (436)
T 2hjg_A 82 EADVIIFMVNGREGVTAADEEVAKILYRTKKPVVLAVNKLDNTEM 126 (436)
T ss_dssp HCSEEEEEEETTTCSCHHHHHHHHHHTTCCSCEEEEEECCCC---
T ss_pred hCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECccCccc
Confidence 578899999999875 22 23444333211234678999998543
No 129
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=23.23 E-value=1e+02 Score=24.38 Aligned_cols=41 Identities=17% Similarity=0.093 Sum_probs=24.4
Q ss_pred CCCeEEEEEeCcCcHH---HHHHHHHhhhhc-------CCCeEEEecccCC
Q 022952 13 NPTEVLLVVDAMTGQE---AAALVTTFNIEI-------GITGAILTKLDGD 53 (289)
Q Consensus 13 ~P~ev~LVldAttgqd---a~~~a~~F~~~v-------~i~gvIlTKlDet 53 (289)
..+-++||+|++.... +......+.... -+--+|+||+|..
T Consensus 80 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 130 (207)
T 1vg8_A 80 GADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLE 130 (207)
T ss_dssp TCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSS
T ss_pred CCcEEEEEEECCCHHHHHHHHHHHHHHHHhcccccCCCCcEEEEEECCCCc
Confidence 4578999999988752 222222222211 1236788999975
No 130
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=23.16 E-value=93 Score=24.55 Aligned_cols=41 Identities=20% Similarity=0.088 Sum_probs=23.7
Q ss_pred CCCeEEEEEeCcCcHHHHHHHH----Hhhhhc--CCCeEEEecccCC
Q 022952 13 NPTEVLLVVDAMTGQEAAALVT----TFNIEI--GITGAILTKLDGD 53 (289)
Q Consensus 13 ~P~ev~LVldAttgqda~~~a~----~F~~~v--~i~gvIlTKlDet 53 (289)
..+-++||+|++......++.. .+.... .+--+|.||+|..
T Consensus 94 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~ 140 (194)
T 3reg_A 94 DSDVVLLCFAVNNRTSFDNISTKWEPEIKHYIDTAKTVLVGLKVDLR 140 (194)
T ss_dssp TCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTSEEEEEEECGGGC
T ss_pred CCcEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhc
Confidence 4578999999998763333212 222110 1235677888864
No 131
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=22.31 E-value=85 Score=30.85 Aligned_cols=36 Identities=22% Similarity=0.272 Sum_probs=25.9
Q ss_pred CCeEEEEEeCcCcHH-----HHHHHHHhhhhcCCCeEEEecccC
Q 022952 14 PTEVLLVVDAMTGQE-----AAALVTTFNIEIGITGAILTKLDG 52 (289)
Q Consensus 14 P~ev~LVldAttgqd-----a~~~a~~F~~~v~i~gvIlTKlDe 52 (289)
-|-.+|||||..|-+ +..++..++ ++ --++++|+|-
T Consensus 124 ~DgAvlVvda~~GV~~qT~~v~~~a~~~~--lp-~i~fINK~Dr 164 (548)
T 3vqt_A 124 VDSALVVIDAAKGVEAQTRKLMDVCRMRA--TP-VMTFVNKMDR 164 (548)
T ss_dssp CSEEEEEEETTTBSCHHHHHHHHHHHHTT--CC-EEEEEECTTS
T ss_pred cCceEEEeecCCCcccccHHHHHHHHHhC--Cc-eEEEEecccc
Confidence 367999999999942 334566655 33 3568999996
No 132
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=22.27 E-value=1.2e+02 Score=22.71 Aligned_cols=41 Identities=15% Similarity=0.039 Sum_probs=23.9
Q ss_pred CCCeEEEEEeCcCcHHH---HHHHHHhhhh--cCCCeEEEecccCC
Q 022952 13 NPTEVLLVVDAMTGQEA---AALVTTFNIE--IGITGAILTKLDGD 53 (289)
Q Consensus 13 ~P~ev~LVldAttgqda---~~~a~~F~~~--v~i~gvIlTKlDet 53 (289)
..+-+++|+|++..... ......+... -.+--+|+||+|..
T Consensus 77 ~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~piilv~nK~Dl~ 122 (168)
T 1z2a_A 77 GAQACVLVFSTTDRESFEAISSWREKVVAEVGDIPTALVQNKIDLL 122 (168)
T ss_dssp TCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCSCCEEEEEECGGGG
T ss_pred CCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccC
Confidence 46789999999886522 1222222111 12346788999963
No 133
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=22.14 E-value=4.8e+02 Score=26.25 Aligned_cols=39 Identities=15% Similarity=0.162 Sum_probs=24.9
Q ss_pred CCCeEEEEEeCcCcHH-----HHHHHHHhhhhcCCCeEEEecccCCC
Q 022952 13 NPTEVLLVVDAMTGQE-----AAALVTTFNIEIGITGAILTKLDGDS 54 (289)
Q Consensus 13 ~P~ev~LVldAttgqd-----a~~~a~~F~~~v~i~gvIlTKlDeta 54 (289)
..|-++||+||+.|.. ...++..++ ++ --+++||+|...
T Consensus 105 ~aD~aIlVvDa~~gv~~qt~~~~~~~~~~~--ip-~ilviNKiD~~~ 148 (704)
T 2rdo_7 105 VLDGAVMVYCAVGGVQPQSETVWRQANKYK--VP-RIAFVNKMDRMG 148 (704)
T ss_pred HCCEEEEEEeCCCCCcHHHHHHHHHHHHcC--CC-EEEEEeCCCccc
Confidence 3578999999998742 222333322 33 357899999743
No 134
>2p22_C Protein SRN2; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_C 2f66_C
Probab=21.96 E-value=41 Score=29.17 Aligned_cols=31 Identities=16% Similarity=0.323 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHhC--CcChHHHHHHHHHHHhc
Q 022952 113 QEDAEEMQKKIMSA--NFDFNDFLKQTRTVARM 143 (289)
Q Consensus 113 ~~~~~~~~~k~~~g--~F~l~Df~~Q~~~i~km 143 (289)
+++.+.+.+.+..| .-++++|+.+++...+.
T Consensus 141 eeeS~~l~~~F~~~~~e~dv~~Fl~~y~~~R~~ 173 (192)
T 2p22_C 141 DEESSQLETTTRSIDSADDLDQFIKNYLDIRTQ 173 (192)
T ss_dssp HHHHHHHHHSCSCCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCcccchHHHHHHHHHHHHHH
Confidence 45567888888877 78999999999887754
No 135
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=21.79 E-value=1.4e+02 Score=22.18 Aligned_cols=40 Identities=13% Similarity=-0.139 Sum_probs=22.9
Q ss_pred CCCeEEEEEeCcCcHH---HHHHHHHhhhhc----CCCeEEEecccC
Q 022952 13 NPTEVLLVVDAMTGQE---AAALVTTFNIEI----GITGAILTKLDG 52 (289)
Q Consensus 13 ~P~ev~LVldAttgqd---a~~~a~~F~~~v----~i~gvIlTKlDe 52 (289)
..+-+++|+|++.... +......+.... -+--+|+||+|.
T Consensus 75 ~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl 121 (168)
T 1u8z_A 75 SGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDL 121 (168)
T ss_dssp HCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCCTTSCEEEEEECGGG
T ss_pred cCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccc
Confidence 4678999999987652 222222222211 123578888886
No 136
>3li6_A Calcium-binding protein; calcium signaling protein, assemble free energy, dynamic behaviour, cytoskeleton, metal binding; 2.50A {Entamoeba histolytica}
Probab=21.70 E-value=68 Score=20.57 Aligned_cols=40 Identities=25% Similarity=0.317 Sum_probs=23.2
Q ss_pred hhHHHHHHHHhccHHHHHHHHHHHH---hCCcChHHHHHHHHH
Q 022952 100 VLSFVEKAQEVMQQEDAEEMQKKIM---SANFDFNDFLKQTRT 139 (289)
Q Consensus 100 i~sLvEk~~~~~~~~~~~~~~~k~~---~g~F~l~Df~~Q~~~ 139 (289)
+..++........+++.+.+.+.+- .|..++++|...+..
T Consensus 22 ~~~~l~~~~~~~~~~~~~~~~~~~D~~~~g~i~~~ef~~~~~~ 64 (66)
T 3li6_A 22 VKAFVSKKRAIKNEQLLQLIFKSIDADGNGEIDQNEFAKFYGS 64 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCTTCSSSCCHHHHHHHHTC
T ss_pred HHHHHHHccCCCcHHHHHHHHHHHCCCCCCCCCHHHHHHHHHh
Confidence 3344444444444555566666552 468899998876643
No 137
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=21.60 E-value=1.4e+02 Score=23.05 Aligned_cols=41 Identities=22% Similarity=0.084 Sum_probs=23.4
Q ss_pred CCCeEEEEEeCcCcHHHHH---HHHHhhhhc---CCCeEEEecccCC
Q 022952 13 NPTEVLLVVDAMTGQEAAA---LVTTFNIEI---GITGAILTKLDGD 53 (289)
Q Consensus 13 ~P~ev~LVldAttgqda~~---~a~~F~~~v---~i~gvIlTKlDet 53 (289)
..+-++||+|++......+ ....+.... .+--+|+||+|..
T Consensus 82 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 128 (186)
T 2bme_A 82 GAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLD 128 (186)
T ss_dssp TCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGG
T ss_pred cCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccc
Confidence 4577999999998753221 222222111 1235778888863
No 138
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=21.52 E-value=1e+02 Score=28.85 Aligned_cols=43 Identities=14% Similarity=0.068 Sum_probs=26.2
Q ss_pred hCCCeEEEEEeCcCcH--HHHHHHHHhhhhcCCCeEEEecccCCC
Q 022952 12 LNPTEVLLVVDAMTGQ--EAAALVTTFNIEIGITGAILTKLDGDS 54 (289)
Q Consensus 12 ~~P~ev~LVldAttgq--da~~~a~~F~~~v~i~gvIlTKlDeta 54 (289)
-..+-++||+|++.+. +-...+......-..--+++||+|...
T Consensus 256 ~~ad~~llv~D~~~~~s~~~~~~~~~~~~~~~~iiiv~NK~Dl~~ 300 (436)
T 2hjg_A 256 DRSEVVAVVLDGEEGIIEQDKRIAGYAHEAGKAVVIVVNKWDAVD 300 (436)
T ss_dssp HHCSEEEEEEETTTCCCHHHHHHHHHHHHTTCEEEEEEECGGGSC
T ss_pred HhCCEEEEEEcCCcCCcHHHHHHHHHHHHcCCcEEEEEECccCCC
Confidence 3568899999999875 222333333221123457789999754
No 139
>3miz_A Putative transcriptional regulator protein, LACI family; LACL family, protein structure initiative II (PSI II), NYSGXRC, structural genomics; 1.91A {Rhizobium etli}
Probab=21.44 E-value=2.3e+02 Score=23.89 Aligned_cols=55 Identities=9% Similarity=0.117 Sum_probs=36.1
Q ss_pred EEEEEeCcCcH-HHHHHHHHhhhhcCCCeEEEecccCCCCCCccccceeccCCCeEEEecC
Q 022952 17 VLLVVDAMTGQ-EAAALVTTFNIEIGITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRG 76 (289)
Q Consensus 17 v~LVldAttgq-da~~~a~~F~~~v~i~gvIlTKlDetargG~aLS~~~~t~~PI~FIgtG 76 (289)
.+++.++.... ...+.++.+.. -+++|+|+.=.+.+. .+......++|+.+++.-
T Consensus 46 ~~~~~~~~~~~~~~~~~~~~l~~-~~vdGiIi~~~~~~~----~~~~~~~~~iPvV~~~~~ 101 (301)
T 3miz_A 46 TILIANTGGSSEREVEIWKMFQS-HRIDGVLYVTMYRRI----VDPESGDVSIPTVMINCR 101 (301)
T ss_dssp EEEEEECTTCHHHHHHHHHHHHH-TTCSEEEEEEEEEEE----CCCCCTTCCCCEEEEEEE
T ss_pred EEEEEeCCCChHHHHHHHHHHHh-CCCCEEEEecCCccH----HHHHHHhCCCCEEEECCC
Confidence 33444544333 34456666654 689999998766543 566677789999998754
No 140
>3qxc_A Dethiobiotin synthetase; DTBS, structural genomics, ATP BIND biology, protein structure initiative, midwest center for S genomics, MCSG; HET: ATP; 1.34A {Helicobacter pylori} PDB: 3mle_A* 3qxh_A* 3qxj_A* 3qxs_A* 3qxx_A* 3qy0_A* 2qmo_A
Probab=21.34 E-value=97 Score=27.18 Aligned_cols=39 Identities=8% Similarity=0.092 Sum_probs=25.8
Q ss_pred CeEEEEEeCcCcH--HHHHHHHHh-hhhcCCCeEEEecccCCC
Q 022952 15 TEVLLVVDAMTGQ--EAAALVTTF-NIEIGITGAILTKLDGDS 54 (289)
Q Consensus 15 ~ev~LVldAttgq--da~~~a~~F-~~~v~i~gvIlTKlDeta 54 (289)
..|+||+++..|. .+...++.+ ...++ -|+|+++++.+.
T Consensus 162 ~pVILV~~~~lg~i~~~~lt~~~l~~~g~~-~GvIlN~v~~~~ 203 (242)
T 3qxc_A 162 AKMLLISHDNLGLINDCLLNDFLLKSHQLD-YKIAINLKGNNT 203 (242)
T ss_dssp CEEEEEECCSTTHHHHHHHHHHHHHTSSSC-EEEEECCCTTCC
T ss_pred CCEEEEEcCCCcHHHHHHHHHHHHHhCCCC-EEEEEeCCCCcc
Confidence 4688888888875 333444444 23467 788888887663
No 141
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=21.16 E-value=1.4e+02 Score=23.47 Aligned_cols=41 Identities=17% Similarity=0.093 Sum_probs=23.6
Q ss_pred CCCeEEEEEeCcCcHHHH---HHHHHhhhhc--C-CCeEEEecccCC
Q 022952 13 NPTEVLLVVDAMTGQEAA---ALVTTFNIEI--G-ITGAILTKLDGD 53 (289)
Q Consensus 13 ~P~ev~LVldAttgqda~---~~a~~F~~~v--~-i~gvIlTKlDet 53 (289)
..+-++||+|++...... .....+.... + +--+|+||+|..
T Consensus 93 ~~d~ii~v~d~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~ 139 (191)
T 2a5j_A 93 GAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLE 139 (191)
T ss_dssp TCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCG
T ss_pred cCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccC
Confidence 467899999998865222 2222222211 1 124778999974
No 142
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=21.05 E-value=84 Score=30.88 Aligned_cols=42 Identities=17% Similarity=0.150 Sum_probs=27.9
Q ss_pred CCCeEEEEEeCcC---cHHHHHHHHHhhhhcCCCeEEEecccCCC
Q 022952 13 NPTEVLLVVDAMT---GQEAAALVTTFNIEIGITGAILTKLDGDS 54 (289)
Q Consensus 13 ~P~ev~LVldAtt---gqda~~~a~~F~~~v~i~gvIlTKlDeta 54 (289)
..+-+++|+|++. ..+....++.....-...-+|+||+|...
T Consensus 188 ~aD~il~VvDa~~~~~~~~~~~~l~~l~~~~~pvilVlNK~Dl~~ 232 (550)
T 2qpt_A 188 RVDLIILLFDAHKLEISDEFSEAIGALRGHEDKIRVVLNKADMVE 232 (550)
T ss_dssp HCSEEEEEEETTSCCCCHHHHHHHHHTTTCGGGEEEEEECGGGSC
T ss_pred hCCEEEEEEeCCcCCCCHHHHHHHHHHHhcCCCEEEEEECCCccC
Confidence 4588999999975 33444555555432234578999999853
No 143
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=20.93 E-value=1.2e+02 Score=27.09 Aligned_cols=41 Identities=20% Similarity=0.090 Sum_probs=23.7
Q ss_pred CCCeEEEEEeCcCcH--HHHHHHHHhhhh--cCCCeEEEecccCC
Q 022952 13 NPTEVLLVVDAMTGQ--EAAALVTTFNIE--IGITGAILTKLDGD 53 (289)
Q Consensus 13 ~P~ev~LVldAttgq--da~~~a~~F~~~--v~i~gvIlTKlDet 53 (289)
..|-++||+|++.+. ....+.+..... --+--+|+||+|..
T Consensus 86 ~ad~il~VvD~~~~~~~~~~~i~~~l~~~~~~~p~ilV~NK~Dl~ 130 (301)
T 1wf3_A 86 DVNAVVWVVDLRHPPTPEDELVARALKPLVGKVPILLVGNKLDAA 130 (301)
T ss_dssp SCSEEEEEEETTSCCCHHHHHHHHHHGGGTTTSCEEEEEECGGGC
T ss_pred cCCEEEEEEECCCCCChHHHHHHHHHHhhcCCCCEEEEEECcccC
Confidence 467899999998753 212223333321 12346778888864
No 144
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=20.91 E-value=1.2e+02 Score=23.84 Aligned_cols=41 Identities=17% Similarity=0.029 Sum_probs=22.6
Q ss_pred CCCeEEEEEeCcCcHHHHH---HHHHhhhh----cCCCeEEEecccCC
Q 022952 13 NPTEVLLVVDAMTGQEAAA---LVTTFNIE----IGITGAILTKLDGD 53 (289)
Q Consensus 13 ~P~ev~LVldAttgqda~~---~a~~F~~~----v~i~gvIlTKlDet 53 (289)
..+-++||+|++......+ ....+... -.+--+|.||+|..
T Consensus 83 ~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~ 130 (181)
T 1fzq_A 83 NTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLL 130 (181)
T ss_dssp TCSEEEEEEETTCGGGHHHHHHHHHHHTTCGGGTTCCEEEEEECTTST
T ss_pred CCCEEEEEEECcCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcCcc
Confidence 5678999999987652222 22222110 01234667788764
No 145
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=20.77 E-value=87 Score=31.21 Aligned_cols=42 Identities=19% Similarity=0.222 Sum_probs=25.4
Q ss_pred hCCCeEEEEEeCcCc---------HHHHHHHHHhhhhcCCC--eEEEecccCCC
Q 022952 12 LNPTEVLLVVDAMTG---------QEAAALVTTFNIEIGIT--GAILTKLDGDS 54 (289)
Q Consensus 12 ~~P~ev~LVldAttg---------qda~~~a~~F~~~v~i~--gvIlTKlDeta 54 (289)
...+-++||+||+.| ....+.+..... +++. -+++||+|...
T Consensus 267 ~~aD~~llVVDa~~g~~e~~~~~~~qt~e~l~~~~~-lgi~~iIVVvNKiDl~~ 319 (611)
T 3izq_1 267 SQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASS-LGIHNLIIAMNKMDNVD 319 (611)
T ss_dssp SCCSEEEEEEECSHHHHHTTCCTTSHHHHHHHHHHT-TTCCEEEEEEECTTTTT
T ss_pred hhcCceEEEEECCCCcccccchhhhHHHHHHHHHHH-cCCCeEEEEEecccccc
Confidence 357889999999976 122222222222 4444 44599999754
No 146
>1ka9_F Imidazole glycerol phosphtate synthase; riken structural genomics/proteomics initiative, RSGI, structural genomics, transferase; 2.30A {Thermus thermophilus} SCOP: c.1.2.1
Probab=20.68 E-value=83 Score=26.68 Aligned_cols=69 Identities=25% Similarity=0.332 Sum_probs=40.3
Q ss_pred HHHHHHHhCCCeEEEEEeCcC----------------cHHHHHHHHHhhhhcCCCeEEEec--ccCCCCCCc--cc-cce
Q 022952 5 LKDVKRVLNPTEVLLVVDAMT----------------GQEAAALVTTFNIEIGITGAILTK--LDGDSRGGA--AL-SVK 63 (289)
Q Consensus 5 Lk~i~~~~~P~ev~LVldAtt----------------gqda~~~a~~F~~~v~i~gvIlTK--lDetargG~--aL-S~~ 63 (289)
+.++.+...++.+.+.+|+.. +.+..+.++.... .+.+.+++|- -|++..+=. .+ .++
T Consensus 114 ~~~~~~~~~~~~i~~~~~~~~~~g~~~v~~~g~~~~~~~~~~e~~~~~~~-~G~~~i~~~~~~~~g~~~g~~~~~i~~l~ 192 (252)
T 1ka9_F 114 IRELADHFGAQAVVLAIDARWRGDFPEVHVAGGRVPTGLHAVEWAVKGVE-LGAGEILLTSMDRDGTKEGYDLRLTRMVA 192 (252)
T ss_dssp HHHHHHHHCGGGEEEEEEEEEETTEEEEEETTTTEEEEEEHHHHHHHHHH-HTCCEEEEEETTTTTTCSCCCHHHHHHHH
T ss_pred HHHHHHHcCCCcEEEEEEEecCCCCEEEEECCCccccCCcHHHHHHHHHH-cCCCEEEEecccCCCCcCCCCHHHHHHHH
Confidence 556666666566778888742 1344555566554 7999999994 344333211 11 233
Q ss_pred eccCCCeEEEe
Q 022952 64 EVSGKPIKLVG 74 (289)
Q Consensus 64 ~~t~~PI~FIg 74 (289)
..+++||...|
T Consensus 193 ~~~~ipvia~G 203 (252)
T 1ka9_F 193 EAVGVPVIASG 203 (252)
T ss_dssp HHCSSCEEEES
T ss_pred HHcCCCEEEeC
Confidence 44578876665
No 147
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=20.66 E-value=1.3e+02 Score=23.53 Aligned_cols=41 Identities=17% Similarity=0.039 Sum_probs=23.6
Q ss_pred CCCeEEEEEeCcCcHH---HHHHHHHhhhhc----CCCeEEEecccCC
Q 022952 13 NPTEVLLVVDAMTGQE---AAALVTTFNIEI----GITGAILTKLDGD 53 (289)
Q Consensus 13 ~P~ev~LVldAttgqd---a~~~a~~F~~~v----~i~gvIlTKlDet 53 (289)
..+-++||+|++.... +......+...+ .+--+|+||+|..
T Consensus 93 ~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~ 140 (189)
T 1z06_A 93 NVHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLR 140 (189)
T ss_dssp TCCEEEEEEETTCHHHHHTHHHHHHHHHHHCCCSCCCEEEEEECTTCG
T ss_pred CCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccc
Confidence 5678999999987642 222222222211 1235778888863
No 148
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=20.31 E-value=1.2e+02 Score=23.81 Aligned_cols=41 Identities=15% Similarity=0.055 Sum_probs=24.0
Q ss_pred CCCeEEEEEeCcCcHH---HHHHHHHhhhh---cCCCeEEEecccCC
Q 022952 13 NPTEVLLVVDAMTGQE---AAALVTTFNIE---IGITGAILTKLDGD 53 (289)
Q Consensus 13 ~P~ev~LVldAttgqd---a~~~a~~F~~~---v~i~gvIlTKlDet 53 (289)
..+-++||+|++.... +......+... -.+--+|+||+|..
T Consensus 94 ~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~ 140 (189)
T 2gf9_A 94 GAMGFLLMYDIANQESFAAVQDWATQIKTYSWDNAQVILVGNKCDLE 140 (189)
T ss_dssp TCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCG
T ss_pred CCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccc
Confidence 4578999999987752 22222333221 11235788999974
No 149
>3egc_A Putative ribose operon repressor; structural genomics, unknown function, DNA-binding, transcri transcription regulation, PSI-2; 2.35A {Burkholderia thailandensis}
Probab=20.25 E-value=2.6e+02 Score=23.38 Aligned_cols=56 Identities=21% Similarity=0.223 Sum_probs=36.8
Q ss_pred EEEEEeCcCcH-HHHHHHHHhhhhcCCCeEEEecccCCCCCCccccceeccCCCeEEEecC
Q 022952 17 VLLVVDAMTGQ-EAAALVTTFNIEIGITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRG 76 (289)
Q Consensus 17 v~LVldAttgq-da~~~a~~F~~~v~i~gvIlTKlDetargG~aLS~~~~t~~PI~FIgtG 76 (289)
.+++.++.... ...+.++.+.. -+++|+|+.=.|. .-..+......++|+.+++..
T Consensus 40 ~~~~~~~~~~~~~~~~~~~~l~~-~~vdgiIi~~~~~---~~~~~~~~~~~~iPvV~~~~~ 96 (291)
T 3egc_A 40 SVLLANTAEDIVREREAVGQFFE-RRVDGLILAPSEG---EHDYLRTELPKTFPIVAVNRE 96 (291)
T ss_dssp EEEEEECTTCHHHHHHHHHHHHH-TTCSEEEECCCSS---CCHHHHHSSCTTSCEEEESSC
T ss_pred EEEEEeCCCCHHHHHHHHHHHHH-CCCCEEEEeCCCC---ChHHHHHhhccCCCEEEEecc
Confidence 34445544333 44456677665 6899999976665 335666677789999888754
No 150
>2pu9_C TRX-F, thioredoxin F-type, chloroplast; protein-protein complex, iron-sulfur, electron transport; 1.65A {Spinacia oleracea} PDB: 2pvo_C 1f9m_A
Probab=20.25 E-value=1.2e+02 Score=21.55 Aligned_cols=76 Identities=13% Similarity=0.039 Sum_probs=41.0
Q ss_pred CCeEEEEEeCcCcHHHHH---HHHHhhhhcCCCeEEEecccCCCCCCccccceeccCCCeEEE-ecCCCCCCCCCCChhH
Q 022952 14 PTEVLLVVDAMTGQEAAA---LVTTFNIEIGITGAILTKLDGDSRGGAALSVKEVSGKPIKLV-GRGERMEDLEPFYPDR 89 (289)
Q Consensus 14 P~ev~LVldAttgqda~~---~a~~F~~~v~i~gvIlTKlDetargG~aLS~~~~t~~PI~FI-gtGQkVdDLe~f~p~~ 89 (289)
..-+++..-|..-..+.. ..+.+....+ ++.+-++|-+.....+.......+.|-.++ -.|+-+.-+.-++++.
T Consensus 24 ~~~vlv~f~a~wC~~C~~~~~~l~~~~~~~~--~v~~~~vd~~~~~~~~~~~~~v~~~Pt~~~~~~G~~~~~~~G~~~~~ 101 (111)
T 2pu9_C 24 DKPVVLDMFTQWCGPSKAMAPKYEKLAEEYL--DVIFLKLDCNQENKTLAKELGIRVVPTFKILKENSVVGEVTGAKYDK 101 (111)
T ss_dssp TSCEEEEEECTTCHHHHHHHHHHHHHHHHCT--TSEEEEEECSSTTHHHHHHHCCSBSSEEEEESSSSEEEEEESSCHHH
T ss_pred CCEEEEEEECCcCHhHHHHCHHHHHHHHHCC--CeEEEEEecCcchHHHHHHcCCCeeeEEEEEeCCcEEEEEcCCCHHH
Confidence 344666677766554443 3333333333 488889988754444444445577887333 3565544444444444
Q ss_pred HH
Q 022952 90 MA 91 (289)
Q Consensus 90 la 91 (289)
+.
T Consensus 102 l~ 103 (111)
T 2pu9_C 102 LL 103 (111)
T ss_dssp HH
T ss_pred HH
Confidence 33
No 151
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=20.05 E-value=1.6e+02 Score=22.96 Aligned_cols=41 Identities=10% Similarity=0.000 Sum_probs=24.0
Q ss_pred CCCeEEEEEeCcCcHHH---HHHHHHhhhhc---CCCeEEEecccCC
Q 022952 13 NPTEVLLVVDAMTGQEA---AALVTTFNIEI---GITGAILTKLDGD 53 (289)
Q Consensus 13 ~P~ev~LVldAttgqda---~~~a~~F~~~v---~i~gvIlTKlDet 53 (289)
..+-++||+|++..... ......+.... -+--+|+||+|..
T Consensus 88 ~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~ 134 (196)
T 3tkl_A 88 GAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLT 134 (196)
T ss_dssp TCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCT
T ss_pred hCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccc
Confidence 46789999999986522 22222222211 1235778999964
No 152
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=20.04 E-value=1.5e+02 Score=23.73 Aligned_cols=41 Identities=22% Similarity=0.064 Sum_probs=23.8
Q ss_pred CCCeEEEEEeCcCcHHHH---HHHHHhhhhc---CCCeEEEecccCC
Q 022952 13 NPTEVLLVVDAMTGQEAA---ALVTTFNIEI---GITGAILTKLDGD 53 (289)
Q Consensus 13 ~P~ev~LVldAttgqda~---~~a~~F~~~v---~i~gvIlTKlDet 53 (289)
..+-++||+|++...... .....+.... -+--+|+||+|..
T Consensus 97 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 143 (200)
T 2o52_A 97 GAAGALLVYDITSRETYNSLAAWLTDARTLASPNIVVILCGNKKDLD 143 (200)
T ss_dssp TCSEEEEEEETTCHHHHHTHHHHHHHHHHHTCTTCEEEEEEECGGGG
T ss_pred cCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCCcc
Confidence 467899999998876322 2222222211 1225778999863
Done!