BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 022955
         (289 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q9Y1J3|PDPK1_CAEEL 3-phosphoinositide-dependent protein kinase 1 OS=Caenorhabditis
           elegans GN=pdk-1 PE=1 SV=1
          Length = 636

 Score = 33.5 bits (75), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 52/194 (26%), Positives = 76/194 (39%), Gaps = 26/194 (13%)

Query: 56  LLDRVKSIDFSLYRFPTQ-PEQQKELHYFHQPTEEPPTYPVEPAPEQTHQLVRAPSLLDR 114
           LL R++ +DFS   FP   PE+  E+               +P+   T Q + A    + 
Sbjct: 318 LLKRIQELDFS---FPEGFPEEASEII--------AKILVRDPSTRITSQELMAHKFFEN 366

Query: 115 VKSINFSLYKFPSYPAQEPEPEPEPYSYANPVEPEPGRLDRAPSLLERV---KSIRLPSV 171
           V  +N +  K P   A  P    EP  Y+N    EPG  DRA   L  +    S   PS 
Sbjct: 367 VDWVNIANIKPPVLHAYIPATFGEPEYYSNIGPVEPGLDDRALFRLMNLGNDASASQPST 426

Query: 172 YRSQEAE-------TEVI-GGNHEAETNTVHKPKRSKSESTNKAKTKSKENMKKSASEKA 223
           +R    E       +E+    N EAE N   +  R++     + K         S   K 
Sbjct: 427 FRPSNVEHRGDPFVSEIAPRANSEAEKN---RAARAQKLEEQRVKNPFHIFTNNSLILKQ 483

Query: 224 MAVEEEREMVERRR 237
             +E++R +  RRR
Sbjct: 484 GYLEKKRGLFARRR 497


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.313    0.128    0.366 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 108,027,999
Number of Sequences: 539616
Number of extensions: 4733152
Number of successful extensions: 21808
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 55
Number of HSP's successfully gapped in prelim test: 446
Number of HSP's that attempted gapping in prelim test: 20737
Number of HSP's gapped (non-prelim): 1224
length of query: 289
length of database: 191,569,459
effective HSP length: 116
effective length of query: 173
effective length of database: 128,974,003
effective search space: 22312502519
effective search space used: 22312502519
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 61 (28.1 bits)