Query 022955
Match_columns 289
No_of_seqs 148 out of 253
Neff 4.2
Searched_HMMs 29240
Date Mon Mar 25 13:56:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022955.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/022955hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1m3w_A H10H24; four-helix bund 32.4 20 0.00068 22.9 1.5 22 253-274 3-24 (32)
2 4f4l_A ION transport protein; 23.1 25 0.00084 27.5 0.9 15 21-35 81-95 (112)
3 1jb0_X Photosystem I subunit P 20.5 61 0.0021 21.3 2.2 18 12-34 13-30 (35)
4 2ejx_A ST0812; arcaea, unknown 18.2 85 0.0029 26.4 3.2 23 256-278 115-137 (139)
5 3hd7_A Vesicle-associated memb 8.9 2.7E+02 0.0091 21.0 3.3 9 7-15 64-72 (91)
6 2ksf_A Sensor protein KDPD; me 7.2 4.3E+02 0.015 20.3 3.9 14 7-20 58-71 (107)
7 1v2z_A Circadian clock protein 6.8 72 0.0025 25.9 -0.9 21 262-282 66-88 (111)
8 1afo_A Glycophorin A; integral 6.7 3.1E+02 0.011 18.5 2.3 17 21-37 15-31 (40)
9 1d0c_A Bovine endothelial nitr 5.8 3E+02 0.01 27.1 2.7 21 254-274 85-105 (444)
10 1fme_A FSD-EY peptide; beta-BE 5.6 1.8E+02 0.0062 17.9 0.7 11 258-268 16-26 (28)
No 1
>1m3w_A H10H24; four-helix bundle, heme binding, maquette, heme binding protein, electron transport, de novo protein; 2.80A {Synthetic} SCOP: k.8.1.1
Probab=32.37 E-value=20 Score=22.87 Aligned_cols=22 Identities=23% Similarity=0.463 Sum_probs=18.6
Q ss_pred CCccchHHHHHHHHHHHHHHHH
Q 022955 253 DHGVDARADDFINKFKRQLRLQ 274 (289)
Q Consensus 253 ~~~VD~~Ad~FI~kF~~qlrlQ 274 (289)
+++|=+.-|+|.++|-+-|+|.
T Consensus 3 ggeiwklheeflkkfeellklh 24 (32)
T 1m3w_A 3 GGEIWKLHEEFLKKFEELLKLH 24 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHH
Confidence 4567778899999999999886
No 2
>4f4l_A ION transport protein; alpha helical membrane protein, voltage-gated sodium channel membrane, metal transport; 3.49A {Magnetococcus marinus}
Probab=23.12 E-value=25 Score=27.51 Aligned_cols=15 Identities=47% Similarity=0.620 Sum_probs=10.0
Q ss_pred hhHHHHHHHHHHHHh
Q 022955 21 TLFLFVNLVIGTIAV 35 (289)
Q Consensus 21 ~lfl~lN~vI~tIa~ 35 (289)
.-|+++|++||.|.-
T Consensus 81 ~~fi~lNLfiaVi~~ 95 (112)
T 4f4l_A 81 TTFTVLNLFIGIIVD 95 (112)
T ss_dssp HHHHHHHHHTTTC--
T ss_pred HHHHHHHHHHHHHHH
Confidence 456788998887654
No 3
>1jb0_X Photosystem I subunit PSAX; membrane protein, multiprotein-pigment complex, photosynthes; HET: CL1 PQN BCR LHG LMG; 2.50A {Synechococcus elongatus} SCOP: f.23.20.1 PDB: 3pcq_X*
Probab=20.49 E-value=61 Score=21.35 Aligned_cols=18 Identities=22% Similarity=0.582 Sum_probs=13.9
Q ss_pred hhhhccCCchhHHHHHHHHHHHH
Q 022955 12 SSWLTLTPSTLFLFVNLVIGTIA 34 (289)
Q Consensus 12 ~swl~~tP~~lfl~lN~vI~tIa 34 (289)
.+|. .|+|.+|+++++-.
T Consensus 13 t~Wa-----lllLaINflVAayY 30 (35)
T 1jb0_X 13 TFWA-----VLLLAINFLVAAYY 30 (35)
T ss_dssp HHHH-----HHHHHHHHHHHHHH
T ss_pred HHHH-----HHHHHHHHHHHHHH
Confidence 4686 68899999987643
No 4
>2ejx_A ST0812; arcaea, unknown function, NPPSFA; 1.79A {Sulfolobus tokodaii str}
Probab=18.24 E-value=85 Score=26.39 Aligned_cols=23 Identities=22% Similarity=0.471 Sum_probs=20.3
Q ss_pred cchHHHHHHHHHHHHHHHHHHHH
Q 022955 256 VDARADDFINKFKRQLRLQRLDS 278 (289)
Q Consensus 256 VD~~Ad~FI~kF~~qlrlQr~~S 278 (289)
+++.-++|+++|-+.+||+|...
T Consensus 115 i~k~i~~f~k~ldE~IRlERIKR 137 (139)
T 2ejx_A 115 VSSNLDRLAENIDEIIRLERIKR 137 (139)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhHHHHHhhhhc
Confidence 67888999999999999999753
No 5
>3hd7_A Vesicle-associated membrane protein 2; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_A 3ipd_A
Probab=8.86 E-value=2.7e+02 Score=21.03 Aligned_cols=9 Identities=11% Similarity=0.516 Sum_probs=6.3
Q ss_pred hHHHhhhhh
Q 022955 7 LWGCMSSWL 15 (289)
Q Consensus 7 ~w~~~~swl 15 (289)
||-.+..|+
T Consensus 64 wwkn~K~~i 72 (91)
T 3hd7_A 64 WWKNLKMMI 72 (91)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 566777776
No 6
>2ksf_A Sensor protein KDPD; methods development, histidine kinase receptor, membrane domain, four-helical bundle, cell-free synthesis, ATP- binding; NMR {Escherichia coli}
Probab=7.17 E-value=4.3e+02 Score=20.26 Aligned_cols=14 Identities=14% Similarity=0.005 Sum_probs=8.1
Q ss_pred hHHHhhhhhccCCc
Q 022955 7 LWGCMSSWLTLTPS 20 (289)
Q Consensus 7 ~w~~~~swl~~tP~ 20 (289)
+.+.+..+++|+||
T Consensus 58 ~ls~l~~nffF~~P 71 (107)
T 2ksf_A 58 VINVVSFDLFFIAP 71 (107)
T ss_dssp HHHHHHHHHTTSCS
T ss_pred HHHHHHHHHhhcCC
Confidence 34445555567887
No 7
>1v2z_A Circadian clock protein KAIA homolog; all alpha, riken structural genomics/proteomics initiative, structural genomics; 1.80A {Thermosynechococcus elongatus} SCOP: a.186.1.1 PDB: 1q6a_A 1q6b_A 1suy_A 1sv1_A
Probab=6.78 E-value=72 Score=25.89 Aligned_cols=21 Identities=43% Similarity=0.868 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHH-H-HHHHHHH
Q 022955 262 DFINKFKRQLRLQ-R-LDSLLRY 282 (289)
Q Consensus 262 ~FI~kF~~qlrlQ-r-~~S~~~~ 282 (289)
+-|+.|-+||||+ | .+-++.|
T Consensus 66 eLmDeFskQLkLEGrsee~LlDY 88 (111)
T 1v2z_A 66 ELMDTFSKQLKLEGRSEDILLDY 88 (111)
T ss_dssp HHHHHHHHHTTCCGGGGGGGTTH
T ss_pred HHHHHHHHHhhhcccchHHHHHH
Confidence 5677899999987 3 3344444
No 8
>1afo_A Glycophorin A; integral membrane protein, transmembrane helix interactions, membrane protein folding; NMR {Homo sapiens} SCOP: j.35.1.1 PDB: 2kpf_A
Probab=6.66 E-value=3.1e+02 Score=18.52 Aligned_cols=17 Identities=41% Similarity=0.481 Sum_probs=11.9
Q ss_pred hhHHHHHHHHHHHHhhc
Q 022955 21 TLFLFVNLVIGTIAVTS 37 (289)
Q Consensus 21 ~lfl~lN~vI~tIa~tS 37 (289)
..|-+.-.|||||...|
T Consensus 15 II~~vmaGiIG~IllI~ 31 (40)
T 1afo_A 15 IIFGVMAGVIGTILLIS 31 (40)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 45666677888887765
No 9
>1d0c_A Bovine endothelial nitric oxide synthase heme DOM; alpha-beta fold, oxidoreductase; HET: HEM INE; 1.65A {Bos taurus} SCOP: d.174.1.1 PDB: 1d0o_A* 1d1v_A* 1d1w_A* 1d1x_A* 1d1y_A* 1dm6_A* 1dm7_A* 1dm8_A* 1dmi_A* 1dmj_A* 1dmk_A* 1ed4_A* 1ed5_A* 1ed6_A* 1foi_A* 1foj_A* 1fol_A* 1foo_A* 1fop_A* 1nse_A* ...
Probab=5.79 E-value=3e+02 Score=27.14 Aligned_cols=21 Identities=24% Similarity=0.468 Sum_probs=17.6
Q ss_pred CccchHHHHHHHHHHHHHHHH
Q 022955 254 HGVDARADDFINKFKRQLRLQ 274 (289)
Q Consensus 254 ~~VD~~Ad~FI~kF~~qlrlQ 274 (289)
++|-..|++||+.||..++.+
T Consensus 85 ~~l~~eA~~Fi~~~y~e~~~~ 105 (444)
T 1d0c_A 85 EQLLSQARDFINQYYSSIKRS 105 (444)
T ss_dssp HHHHHHHHHHHHHHHHHTTCT
T ss_pred HHHHHHHHHHHHHHHHhcccc
Confidence 467899999999999998653
No 10
>1fme_A FSD-EY peptide; beta-BETA-alpha, zinc finger, designed protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1 PDB: 1fsd_A 1fsv_A 2k6r_A* 1psv_A
Probab=5.60 E-value=1.8e+02 Score=17.93 Aligned_cols=11 Identities=55% Similarity=0.863 Sum_probs=7.8
Q ss_pred hHHHHHHHHHH
Q 022955 258 ARADDFINKFK 268 (289)
Q Consensus 258 ~~Ad~FI~kF~ 268 (289)
+.-.+||.+|+
T Consensus 16 kelrdfiekfk 26 (28)
T 1fme_A 16 KELRDFIEKFK 26 (28)
T ss_dssp HHHHHHHHHCC
T ss_pred HHHHHHHHHhc
Confidence 44568998884
Done!