Query 022955
Match_columns 289
No_of_seqs 148 out of 253
Neff 4.2
Searched_HMMs 13730
Date Mon Mar 25 13:56:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022955.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/022955hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1xmeb2 f.17.2.1 (B:3-36) Bact 62.2 1 7.6E-05 27.6 0.7 20 11-30 13-32 (34)
2 d1yqga1 a.100.1.10 (A:153-263) 9.1 64 0.0047 23.4 1.8 21 7-30 7-27 (111)
3 d2ahra1 a.100.1.10 (A:153-256) 9.0 58 0.0042 23.4 1.4 21 8-31 6-26 (104)
4 d1q2oa_ d.174.1.1 (A:) Nitric 7.4 55 0.004 29.7 0.7 22 253-274 56-77 (416)
5 d1jb0x_ f.23.20.1 (X:) Subunit 6.6 1.5E+02 0.011 17.0 2.2 19 12-35 7-25 (29)
6 d1v2za_ a.186.1.1 (A:) Circadi 6.6 35 0.0026 25.6 -0.9 21 262-282 66-88 (106)
7 d1yvua1 b.34.14.1 (A:4-314) Ar 6.3 1.1E+02 0.008 25.4 2.1 14 259-272 107-120 (311)
8 d3e7ma1 d.174.1.1 (A:77-497) N 6.0 49 0.0036 30.1 -0.4 22 253-274 54-75 (421)
9 d1b33n_ d.30.1.1 (N:) Allophyc 5.9 1.3E+02 0.0092 20.6 1.9 15 262-276 32-46 (67)
10 d2axth1 f.23.33.1 (H:2-65) Pho 5.9 1.5E+02 0.011 20.1 2.3 20 21-40 35-54 (64)
No 1
>d1xmeb2 f.17.2.1 (B:3-36) Bacterial ba3 type cytochrome c oxidase subunit II {Thermus thermophilus [TaxId: 274]}
Probab=62.19 E-value=1 Score=27.61 Aligned_cols=20 Identities=30% Similarity=0.798 Sum_probs=15.4
Q ss_pred hhhhhccCCchhHHHHHHHH
Q 022955 11 MSSWLTLTPSTLFLFVNLVI 30 (289)
Q Consensus 11 ~~swl~~tP~~lfl~lN~vI 30 (289)
-.+||.|+-++||+|+-+|-
T Consensus 13 ekgwlafslamlfvfialia 32 (34)
T d1xmeb2 13 EKGWLAFSLAMLFVFIALIA 32 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHHHHHHh
Confidence 35899888899998876653
No 2
>d1yqga1 a.100.1.10 (A:153-263) Pyrroline-5-carboxylate reductase ProC {Neisseria meningitidis, serogroup B [TaxId: 487]}
Probab=9.09 E-value=64 Score=23.43 Aligned_cols=21 Identities=14% Similarity=0.187 Sum_probs=13.9
Q ss_pred hHHHhhhhhccCCchhHHHHHHHH
Q 022955 7 LWGCMSSWLTLTPSTLFLFVNLVI 30 (289)
Q Consensus 7 ~w~~~~swl~~tP~~lfl~lN~vI 30 (289)
....+.+. -|+|+|.|++.++
T Consensus 7 ~~Tal~GS---GPAy~~~~~ea~~ 27 (111)
T d1yqga1 7 GITGISGS---GPAYVFYLLDALQ 27 (111)
T ss_dssp HHHHHTTS---HHHHHHHHHHHHH
T ss_pred HHHHhcCc---hHHHHHHHHHHHH
Confidence 44555555 4778887777776
No 3
>d2ahra1 a.100.1.10 (A:153-256) Pyrroline-5-carboxylate reductase ProC {Streptococcus pyogenes [TaxId: 1314]}
Probab=9.01 E-value=58 Score=23.42 Aligned_cols=21 Identities=14% Similarity=0.539 Sum_probs=13.9
Q ss_pred HHHhhhhhccCCchhHHHHHHHHH
Q 022955 8 WGCMSSWLTLTPSTLFLFVNLVIG 31 (289)
Q Consensus 8 w~~~~swl~~tP~~lfl~lN~vI~ 31 (289)
+..+.+. -|+|+|+|++.++=
T Consensus 6 ~TalsGS---GPAf~~~~~ea~~~ 26 (104)
T d2ahra1 6 FTALAGS---SPAYIYLFIEALAK 26 (104)
T ss_dssp HHHHHTT---HHHHHHHHHHHHHH
T ss_pred HhHhccC---hHHHHHHHHHHHHH
Confidence 4455555 47788888777763
No 4
>d1q2oa_ d.174.1.1 (A:) Nitric oxide (NO) synthase oxygenase domain {Cow (Bos taurus) [TaxId: 9913]}
Probab=7.37 E-value=55 Score=29.75 Aligned_cols=22 Identities=23% Similarity=0.442 Sum_probs=18.7
Q ss_pred CCccchHHHHHHHHHHHHHHHH
Q 022955 253 DHGVDARADDFINKFKRQLRLQ 274 (289)
Q Consensus 253 ~~~VD~~Ad~FI~kF~~qlrlQ 274 (289)
.++|-..|++||+.||..|+.-
T Consensus 56 ~e~ll~eA~~Fi~q~y~e~~~~ 77 (416)
T d1q2oa_ 56 AEQLLSQARDFINQYYSSIKRS 77 (416)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCT
T ss_pred HHHHHHHHHHHHHHHHHhhCcc
Confidence 4678899999999999998743
No 5
>d1jb0x_ f.23.20.1 (X:) Subunit PsaX of photosystem I reaction centre {Synechococcus elongatus [TaxId: 32046]}
Probab=6.58 E-value=1.5e+02 Score=17.01 Aligned_cols=19 Identities=21% Similarity=0.553 Sum_probs=13.7
Q ss_pred hhhhccCCchhHHHHHHHHHHHHh
Q 022955 12 SSWLTLTPSTLFLFVNLVIGTIAV 35 (289)
Q Consensus 12 ~swl~~tP~~lfl~lN~vI~tIa~ 35 (289)
..|. .|.|.+|+++++-..
T Consensus 7 t~wa-----~lllainflvaayyf 25 (29)
T d1jb0x_ 7 TFWA-----VLLLAINFLVAAYYF 25 (29)
T ss_dssp HHHH-----HHHHHHHHHHHHHHH
T ss_pred HHHH-----HHHHHHHHHHHHHHH
Confidence 4675 778889998876543
No 6
>d1v2za_ a.186.1.1 (A:) Circadian clock protein KaiA, C-terminal domain {Thermosynechococcus elongatus bp-1 [TaxId: 197221]}
Probab=6.57 E-value=35 Score=25.63 Aligned_cols=21 Identities=43% Similarity=0.868 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHH-H-HHHHHHH
Q 022955 262 DFINKFKRQLRLQ-R-LDSLLRY 282 (289)
Q Consensus 262 ~FI~kF~~qlrlQ-r-~~S~~~~ 282 (289)
+-|+.|-+||||+ | .+-++.|
T Consensus 66 eLmdeFskqLkLEGrs~e~LlDY 88 (106)
T d1v2za_ 66 ELMDTFSKQLKLEGRSEDILLDY 88 (106)
T ss_dssp HHHHHHHHHTTCCGGGGGGGTTH
T ss_pred HHHHHHHHHHhhccccHHHHHHH
Confidence 5678899999987 3 3334444
No 7
>d1yvua1 b.34.14.1 (A:4-314) Argonaute homologue Aq_1447 {Aquifex aeolicus [TaxId: 63363]}
Probab=6.28 E-value=1.1e+02 Score=25.43 Aligned_cols=14 Identities=36% Similarity=0.738 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHH
Q 022955 259 RADDFINKFKRQLR 272 (289)
Q Consensus 259 ~Ad~FI~kF~~qlr 272 (289)
.-|.||..||+.+|
T Consensus 107 vkdkfisdfykkfr 120 (311)
T d1yvua1 107 VKDKFISDFYKKFR 120 (311)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHhh
Confidence 34689999998886
No 8
>d3e7ma1 d.174.1.1 (A:77-497) Nitric oxide (NO) synthase oxygenase domain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=6.00 E-value=49 Score=30.11 Aligned_cols=22 Identities=18% Similarity=0.241 Sum_probs=18.3
Q ss_pred CCccchHHHHHHHHHHHHHHHH
Q 022955 253 DHGVDARADDFINKFKRQLRLQ 274 (289)
Q Consensus 253 ~~~VD~~Ad~FI~kF~~qlrlQ 274 (289)
.++|=..|++||+.||..++..
T Consensus 54 ~e~ll~eA~~Fi~qyy~e~~~~ 75 (421)
T d3e7ma1 54 LEELLPHAIEFINQYYGSFKEA 75 (421)
T ss_dssp HHHHHHHHHHHHHHHHTTCSSC
T ss_pred HHHHHHHHHHHHHHHHHHhccc
Confidence 3678899999999999887643
No 9
>d1b33n_ d.30.1.1 (N:) Allophycocyanin linker chain (domain) {Mastigocladus laminosus [TaxId: 83541]}
Probab=5.93 E-value=1.3e+02 Score=20.57 Aligned_cols=15 Identities=33% Similarity=0.643 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHH
Q 022955 262 DFINKFKRQLRLQRL 276 (289)
Q Consensus 262 ~FI~kF~~qlrlQr~ 276 (289)
.|-+.|.+|.|+|++
T Consensus 32 py~nWf~EQQrI~K~ 46 (67)
T d1b33n_ 32 PYENWFREQQRIQKM 46 (67)
T ss_dssp EHHHHHHHHHHHHHT
T ss_pred chHHHHHHHHHHHHh
Confidence 477899999999974
No 10
>d2axth1 f.23.33.1 (H:2-65) Photosystem II reaction center protein H, PsbH {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=5.87 E-value=1.5e+02 Score=20.10 Aligned_cols=20 Identities=30% Similarity=0.298 Sum_probs=16.7
Q ss_pred hhHHHHHHHHHHHHhhcccc
Q 022955 21 TLFLFVNLVIGTIAVTSRFT 40 (289)
Q Consensus 21 ~lfl~lN~vI~tIa~tS~~~ 40 (289)
.||.++-+||--|..+|-.-
T Consensus 35 ~Lf~vfl~iiLeiYNss~ll 54 (64)
T d2axth1 35 GLFLVFLLIILEIYNSTLIL 54 (64)
T ss_dssp HHHHHHHHHHHHHHTTSSCC
T ss_pred HHHHHHHHHHHHHhccceee
Confidence 68899999999999888654
Done!