Query 022957
Match_columns 289
No_of_seqs 213 out of 1174
Neff 6.3
Searched_HMMs 46136
Date Fri Mar 29 07:24:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022957.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/022957hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK14831 undecaprenyl pyrophos 100.0 1.6E-54 3.6E-59 395.1 18.3 185 65-256 19-249 (249)
2 PRK14836 undecaprenyl pyrophos 100.0 1.8E-54 4E-59 395.4 17.9 188 64-258 12-245 (253)
3 PRK14829 undecaprenyl pyrophos 100.0 3.6E-54 7.7E-59 391.8 18.9 185 65-256 13-243 (243)
4 PRK14832 undecaprenyl pyrophos 100.0 7.2E-54 1.6E-58 390.7 18.9 187 65-258 17-249 (253)
5 PRK14834 undecaprenyl pyrophos 100.0 1.5E-53 3.2E-58 388.3 19.8 188 64-258 12-245 (249)
6 TIGR00055 uppS undecaprenyl di 100.0 1.3E-53 2.9E-58 383.5 18.1 180 68-254 1-226 (226)
7 PRK14837 undecaprenyl pyrophos 100.0 1.5E-53 3.3E-58 383.5 17.7 181 64-255 4-230 (230)
8 PRK14830 undecaprenyl pyrophos 100.0 2.4E-53 5.1E-58 387.8 19.2 186 64-256 20-251 (251)
9 PRK14838 undecaprenyl pyrophos 100.0 2.6E-53 5.6E-58 385.3 18.7 186 65-257 9-238 (242)
10 PRK14828 undecaprenyl pyrophos 100.0 4E-53 8.7E-58 387.3 19.4 188 65-255 25-256 (256)
11 PRK14842 undecaprenyl pyrophos 100.0 3.7E-53 8.1E-58 383.9 19.0 186 65-256 7-238 (241)
12 PRK14827 undecaprenyl pyrophos 100.0 3E-53 6.5E-58 393.7 18.7 185 65-256 66-296 (296)
13 PRK14841 undecaprenyl pyrophos 100.0 5E-53 1.1E-57 381.8 18.8 185 64-257 1-231 (233)
14 PRK14840 undecaprenyl pyrophos 100.0 5.9E-53 1.3E-57 384.2 19.3 185 64-255 16-250 (250)
15 PRK14835 undecaprenyl pyrophos 100.0 1.8E-52 3.9E-57 385.9 19.3 189 64-255 39-275 (275)
16 COG0020 UppS Undecaprenyl pyro 100.0 2.9E-52 6.3E-57 378.9 19.1 185 65-256 15-245 (245)
17 PRK14833 undecaprenyl pyrophos 100.0 6.2E-52 1.3E-56 374.7 18.8 183 65-256 3-232 (233)
18 PRK14839 undecaprenyl pyrophos 100.0 1.6E-51 3.4E-56 371.8 17.7 181 61-257 4-230 (239)
19 cd00475 CIS_IPPS Cis (Z)-Isopr 100.0 4.2E-50 9E-55 360.5 17.8 175 67-248 1-221 (221)
20 PRK10240 undecaprenyl pyrophos 100.0 5.7E-49 1.2E-53 354.6 17.4 178 74-258 1-224 (229)
21 PF01255 Prenyltransf: Putativ 100.0 2.6E-48 5.5E-53 350.1 13.0 175 73-255 1-223 (223)
22 PTZ00349 dehydrodolichyl dipho 100.0 2.1E-46 4.5E-51 349.5 17.1 182 65-248 18-306 (322)
23 KOG1602 Cis-prenyltransferase 100.0 1.9E-42 4.1E-47 311.5 16.5 185 64-256 34-267 (271)
24 KOG2818 Predicted undecaprenyl 100.0 2.5E-31 5.3E-36 240.2 18.2 235 13-255 4-263 (263)
25 PF13043 DUF3903: Domain of un 66.2 2.6 5.6E-05 27.6 0.6 15 242-256 9-24 (40)
26 PF07736 CM_1: Chorismate muta 62.2 13 0.00028 30.6 4.1 32 146-177 9-40 (118)
27 PF00763 THF_DHG_CYH: Tetrahyd 50.1 17 0.00037 29.4 3.0 54 65-121 27-80 (117)
28 smart00549 TAFH TAF homology. 48.8 21 0.00047 28.1 3.2 45 148-202 17-61 (92)
29 TIGR01796 CM_mono_aroH monofun 48.8 20 0.00043 29.5 3.1 74 147-223 10-90 (117)
30 cd02185 AroH Chorismate mutase 48.3 21 0.00044 29.4 3.1 78 147-228 10-95 (117)
31 COG4792 EscU Type III secretor 47.4 2.7E+02 0.0059 26.9 11.2 36 65-100 262-307 (349)
32 PRK14179 bifunctional 5,10-met 38.5 1.5E+02 0.0032 28.1 7.7 53 66-121 31-83 (284)
33 PLN02616 tetrahydrofolate dehy 35.7 1.3E+02 0.0028 29.5 7.0 55 65-122 101-155 (364)
34 TIGR02803 ExbD_1 TonB system t 34.3 1.2E+02 0.0025 24.4 5.6 23 80-102 96-118 (122)
35 PRK14168 bifunctional 5,10-met 33.5 1.6E+02 0.0034 28.0 7.1 54 66-122 32-85 (297)
36 PRK14188 bifunctional 5,10-met 33.3 1.6E+02 0.0034 28.0 7.0 54 65-121 30-83 (296)
37 TIGR02804 ExbD_2 TonB system t 32.8 89 0.0019 25.1 4.7 22 81-102 96-117 (121)
38 PHA02679 ORF091 IMV membrane p 32.4 36 0.00077 24.1 1.9 16 20-35 37-52 (53)
39 PHA03047 IMV membrane receptor 31.5 37 0.0008 24.0 1.8 16 20-35 37-52 (53)
40 PRK14184 bifunctional 5,10-met 31.2 1.7E+02 0.0038 27.6 6.9 53 66-121 30-82 (286)
41 PRK14171 bifunctional 5,10-met 29.9 2.4E+02 0.0052 26.7 7.6 54 66-122 31-84 (288)
42 PRK09482 flap endonuclease-lik 28.6 2E+02 0.0044 26.7 6.8 20 232-251 188-207 (256)
43 PF06269 DUF1029: Protein of u 28.0 41 0.0009 23.8 1.6 16 20-35 37-52 (53)
44 cd05014 SIS_Kpsf KpsF-like pro 28.0 1.3E+02 0.0028 23.6 4.8 39 66-106 46-84 (128)
45 PHA02724 hydrophobic IMV membr 26.9 54 0.0012 23.2 2.0 16 20-35 37-52 (53)
46 PRK04239 hypothetical protein; 26.6 1.7E+02 0.0036 23.9 5.1 45 151-200 61-105 (110)
47 PRK14178 bifunctional 5,10-met 26.3 1.9E+02 0.0041 27.3 6.2 54 65-121 24-77 (279)
48 cd00954 NAL N-Acetylneuraminic 26.2 5.2E+02 0.011 23.8 11.0 118 75-208 13-137 (288)
49 COG2949 SanA Uncharacterized m 26.0 5.2E+02 0.011 23.7 8.6 54 13-75 10-64 (235)
50 PLN02897 tetrahydrofolate dehy 25.4 2.2E+02 0.0047 27.8 6.6 55 65-122 84-138 (345)
51 PLN03044 GTP cyclohydrolase I; 25.4 80 0.0017 28.0 3.4 28 68-95 87-114 (188)
52 PRK14183 bifunctional 5,10-met 25.0 2.3E+02 0.0051 26.7 6.6 53 66-121 30-82 (281)
53 PF13302 Acetyltransf_3: Acety 24.8 1.6E+02 0.0035 22.8 4.9 41 69-109 86-130 (142)
54 PRK14167 bifunctional 5,10-met 24.3 2.4E+02 0.0052 26.8 6.6 53 66-121 30-82 (297)
55 PF02739 5_3_exonuc_N: 5'-3' e 23.7 2.1E+02 0.0045 24.6 5.6 37 66-102 50-105 (169)
56 KOG3415 Putative Rab5-interact 23.4 3.9E+02 0.0086 22.0 6.7 35 5-39 39-73 (129)
57 PRK11024 colicin uptake protei 23.3 1.6E+02 0.0035 24.3 4.7 22 81-102 115-136 (141)
58 cd05006 SIS_GmhA Phosphoheptos 22.7 1.6E+02 0.0035 24.8 4.8 39 66-106 100-138 (177)
59 TIGR02801 tolR TolR protein. T 22.6 1.7E+02 0.0037 23.6 4.6 23 80-102 104-126 (129)
60 cd01477 vWA_F09G8-8_type VWA F 22.5 1.2E+02 0.0027 26.5 4.0 38 65-102 130-167 (193)
61 TIGR02468 sucrsPsyn_pln sucros 22.4 3E+02 0.0065 30.8 7.7 25 182-208 814-840 (1050)
62 PRK14185 bifunctional 5,10-met 21.9 3.2E+02 0.0069 25.9 6.9 55 65-122 29-83 (293)
63 PF13305 WHG: WHG domain; PDB: 20.4 1.3E+02 0.0029 21.3 3.3 19 19-37 59-77 (81)
64 cd05009 SIS_GlmS_GlmD_2 SIS (S 20.3 1.8E+02 0.0039 23.3 4.4 39 67-106 61-99 (153)
No 1
>PRK14831 undecaprenyl pyrophosphate synthase; Provisional
Probab=100.00 E-value=1.6e-54 Score=395.07 Aligned_cols=185 Identities=16% Similarity=0.256 Sum_probs=163.3
Q ss_pred CCCCeEEEEEcCCCC--------------CChHHHHHHHHHHHhcCCCEEEEEeeC-CCCCcChHH---HHHHhhhc---
Q 022957 65 DKLRYLAIVIESEEA--------------YHIPAVIQLLQWLVDIGVKHVCLYDAE-GILKKSKES---ILGKLNNA--- 123 (289)
Q Consensus 65 ~~P~HlaVImdgn~~--------------~g~~~v~~i~~Wc~~~GI~~LTlYd~s-g~lKr~~~~---L~~~l~~~--- 123 (289)
.+|+|||||||||+| .|++++.+++.||.++||++||||+|| +||||+.++ ||+++.+.
T Consensus 19 ~~P~HVaiImDGNrRwA~~~gl~~~~GH~~G~~~l~~i~~~c~~~GI~~vT~yaFS~eN~kR~~~Ev~~Lm~L~~~~l~~ 98 (249)
T PRK14831 19 RLPKHVAVIMDGNGRWAKRRGLPRIMGHRRGVDALKDLLRCCKDWGIGALTAYAFSTENWSRPLEEVNFLMTLFERVLRR 98 (249)
T ss_pred CCCCeEEEecCCcHHHHHHCCCchhhhHHHHHHHHHHHHHHHHHcCCCEEEEeecchhhhCcCHHHHHHHHHHHHHHHHH
Confidence 689999999999996 299999999999999999999999998 999999875 56555321
Q ss_pred -------CC-----------CCch------hhhhhccCCCceEEEEEeCCCcHHHHHHHHHHHHHHHHHcCCCCcccccc
Q 022957 124 -------TL-----------FEEA------GESNLLLDHKHITLEFASFPDGKEAVAKAANLLFMKYVKLGGSGKIQEEK 179 (289)
Q Consensus 124 -------~~-----------~~~~------~~~~~t~~~~~l~l~l~s~ydGR~eIv~a~r~l~~~~~~~~~~~~~di~~ 179 (289)
++ +|.. ..++.|+++++++||+|++||||+||++|++++++++ +.|.+++++
T Consensus 99 ~~~~~~~~~iri~~iG~~~~Lp~~l~~~i~~~e~~T~~~~~~~Lnia~~Yggr~EIv~A~~~l~~~v-~~g~l~~~~--- 174 (249)
T PRK14831 99 ELEELMEENVRIRFVGDLDPLPKSLQEEISRSTELTKNNNGIHFNVCTNYGGRQEIVQAARAIAQQV-QQGELDPSE--- 174 (249)
T ss_pred HHHHHHHCCcEEEEEechhhCCHHHHHHHHHHHHHhccCCceEEEEEecCCCHHHHHHHHHHHHHHH-HcCCCChHh---
Confidence 11 3321 1235689999999999999999999999999999885 677887776
Q ss_pred cccHHHHHHHHHhcCCCCCCCcEEEEeCCCcccCCCchhhhhhheEEecCCC-CCCCHHHHHHHHHHHhhhhhccCCc
Q 022957 180 IFTEAHMSEALRAVGCKGPEPDLLLVYGPVRCHLGFPAWRIRYTEIVHMGRL-KSMRYGSLLKAIYKFTMVRQNYGKS 256 (289)
Q Consensus 180 ~i~e~~l~~~L~~~~~~~pdPDLlIrtGg~~rLsgFlpWQiryTEi~~~~~~-p~f~~~df~~AL~~Y~~rerRfGk~ 256 (289)
++++.++++|+ ++++|||||+||||||.|||||||||++||||||++.+ |+|++.||.+||.+|++|+||||++
T Consensus 175 -i~e~~~~~~L~--t~~~pdpDLlIRTsGE~RLSnFLlWQ~ayaEl~F~~~lWPdf~~~dl~~al~~y~~R~RRfG~~ 249 (249)
T PRK14831 175 -IDENLFESELY--TAGIKDPDLLIRTSGEMRISNFLLWQLAYAEIYVTDVLWPDFDRDEFHKALLDYQSRERRFGGV 249 (249)
T ss_pred -CCHHHHHHhhc--cCCCCCCCEEEeCCCCccccCchhhhhhceeEEECCCCCCcCCHHHHHHHHHHHHhcccCCCCC
Confidence 88999999998 47899999999999999999999999999999999996 9999999999999999999999984
No 2
>PRK14836 undecaprenyl pyrophosphate synthase; Provisional
Probab=100.00 E-value=1.8e-54 Score=395.37 Aligned_cols=188 Identities=19% Similarity=0.271 Sum_probs=165.1
Q ss_pred CCCCCeEEEEEcCCCC--------------CChHHHHHHHHHHHhcCCCEEEEEeeC-CCCCcChHH---HHHHhhhc--
Q 022957 64 IDKLRYLAIVIESEEA--------------YHIPAVIQLLQWLVDIGVKHVCLYDAE-GILKKSKES---ILGKLNNA-- 123 (289)
Q Consensus 64 ~~~P~HlaVImdgn~~--------------~g~~~v~~i~~Wc~~~GI~~LTlYd~s-g~lKr~~~~---L~~~l~~~-- 123 (289)
.++|+|||||||||+| .|++++.+++.||.+.||++||+|+|| +||||+.++ ||+++...
T Consensus 12 ~~~P~HVAiImDGNrRwA~~~gl~~~~GH~~G~~~~~~iv~~c~~~gI~~lTvYaFS~eN~~R~~~EV~~Lm~l~~~~l~ 91 (253)
T PRK14836 12 ENIPRHIAIIMDGNGRWAKRRGKPRVEGHRAGVRAVRRTIEFCLEKGIEMLTLFAFSSENWLRPADEVSALMELFLKALD 91 (253)
T ss_pred CCCCCeEEEecCCcHHHHHHCCCchhhhHHHHHHHHHHHHHHHHHcCCCEEehhHhhhhhcCCCHHHHHHHHHHHHHHHH
Confidence 3789999999999986 299999999999999999999999997 999999875 56554321
Q ss_pred --------C-----------CCCch------hhhhhccCCCceEEEEEeCCCcHHHHHHHHHHHHHHHHHcCCCCccccc
Q 022957 124 --------T-----------LFEEA------GESNLLLDHKHITLEFASFPDGKEAVAKAANLLFMKYVKLGGSGKIQEE 178 (289)
Q Consensus 124 --------~-----------~~~~~------~~~~~t~~~~~l~l~l~s~ydGR~eIv~a~r~l~~~~~~~~~~~~~di~ 178 (289)
+ .+|.. ..++.|+++++++||+|++||||+||++|+|++++++ +.|.+++++
T Consensus 92 ~~~~~~~~~~irv~viG~~~~Lp~~~~~~i~~~e~~T~~n~~~~Lnla~~YggR~EI~~A~k~l~~~~-~~g~l~~~~-- 168 (253)
T PRK14836 92 REVDKLHRNGIRVRFIGDRSRLSPKLQERMEYAERLTASNTRLILSLAVSYGGRWDIVTAARALAREV-AAGKLAPDE-- 168 (253)
T ss_pred HHHHHHHHCCCEEEEEeccccCCHHHHHHHHHHHHHhccCCceEEEEEecCCCHHHHHHHHHHHHHHH-HhCCCChHh--
Confidence 1 13321 1345689999999999999999999999999998875 677787776
Q ss_pred ccccHHHHHHHHHhcCCCCCCCcEEEEeCCCcccCCCchhhhhhheEEecCCC-CCCCHHHHHHHHHHHhhhhhccCCcc
Q 022957 179 KIFTEAHMSEALRAVGCKGPEPDLLLVYGPVRCHLGFPAWRIRYTEIVHMGRL-KSMRYGSLLKAIYKFTMVRQNYGKSS 257 (289)
Q Consensus 179 ~~i~e~~l~~~L~~~~~~~pdPDLlIrtGg~~rLsgFlpWQiryTEi~~~~~~-p~f~~~df~~AL~~Y~~rerRfGk~~ 257 (289)
++++.++++|+ ++++|||||||||||+.|||||||||++||||||++++ |+|++.||.+||.+|++|+||||++.
T Consensus 169 --i~e~~i~~~L~--~~~~pdpDLlIRTsGE~RLSnFLlWQ~ayaElyF~~~lWPdf~~~d~~~aL~~y~~R~RRfG~~~ 244 (253)
T PRK14836 169 --IDEALLAQHLA--LADLPEPDLFIRTSGELRISNFLLWQLAYTELYFTDTLWPDFDAQELQQALEDYASRERRFGKTS 244 (253)
T ss_pred --CCHHHHHHHhc--cCCCCCCCEEEEcCCcccccCChHHHHhheEEEeCCCCCCcCCHHHHHHHHHHHHccCccCCCch
Confidence 88999999998 47899999999999999999999999999999999996 99999999999999999999999974
Q ss_pred h
Q 022957 258 F 258 (289)
Q Consensus 258 ~ 258 (289)
.
T Consensus 245 ~ 245 (253)
T PRK14836 245 A 245 (253)
T ss_pred h
Confidence 3
No 3
>PRK14829 undecaprenyl pyrophosphate synthase; Provisional
Probab=100.00 E-value=3.6e-54 Score=391.78 Aligned_cols=185 Identities=19% Similarity=0.281 Sum_probs=162.7
Q ss_pred CCCCeEEEEEcCCCC--------------CChHHHHHHHHHHHhcCCCEEEEEeeC-CCCCcChHH---HHHHhhhc---
Q 022957 65 DKLRYLAIVIESEEA--------------YHIPAVIQLLQWLVDIGVKHVCLYDAE-GILKKSKES---ILGKLNNA--- 123 (289)
Q Consensus 65 ~~P~HlaVImdgn~~--------------~g~~~v~~i~~Wc~~~GI~~LTlYd~s-g~lKr~~~~---L~~~l~~~--- 123 (289)
.+|+|||||||||+| .|++++.+++.||.+.||++||||+|| +||||+.++ ||+++...
T Consensus 13 ~~P~HvaiImDGNrRwAk~~g~~~~~GH~~G~~~l~~iv~~c~~~gI~~vTvYaFS~eN~kR~~~Ev~~lm~L~~~~l~~ 92 (243)
T PRK14829 13 KLPRHIAVVMDGNGRWATQRGLKRTEGHKAGEPVLFDVVAGAIEAGVPYLSLYTFSTENWKRSPDEVRFLMGFSRDVIHR 92 (243)
T ss_pred CCCCeEEEecCCCHHHHHHCCCChhHHHHHHHHHHHHHHHHHHHcCCCEEEEeeecchhhCCCHHHHHHHHHHHHHHHHH
Confidence 689999999999996 299999999999999999999999996 999999874 56554321
Q ss_pred -------C-----------CCCc-h-----hhhhhccCCCceEEEEEeCCCcHHHHHHHHHHHHHHHHHcCCCCcccccc
Q 022957 124 -------T-----------LFEE-A-----GESNLLLDHKHITLEFASFPDGKEAVAKAANLLFMKYVKLGGSGKIQEEK 179 (289)
Q Consensus 124 -------~-----------~~~~-~-----~~~~~t~~~~~l~l~l~s~ydGR~eIv~a~r~l~~~~~~~~~~~~~di~~ 179 (289)
+ .+|. + ..+..|.++++++||+|++||||+||++|++++++++ +.|.+++++
T Consensus 93 ~~~~~~~~~iri~~iG~~~~Lp~~~~~~i~~~e~~T~~~~~~~Lnia~~Y~gr~EI~~A~~~~~~~~-~~g~~~~~~--- 168 (243)
T PRK14829 93 RREQMDEWGVRVRWSGRRPRLWKSVIDELEAAEELTKNNTTMDLVFCVNYGGRAEIADAAAAIAREV-RDGKISGDR--- 168 (243)
T ss_pred HHHHHHHcCcEEEEEechhhCCHHHHHHHHHHHHHhccCCceEEEEEecCCCHHHHHHHHHHHHHHH-HcCCCChHh---
Confidence 1 1332 1 1235689999999999999999999999999998875 677787776
Q ss_pred cccHHHHHHHHHhcCCCCCCCcEEEEeCCCcccCCCchhhhhhheEEecCCC-CCCCHHHHHHHHHHHhhhhhccCCc
Q 022957 180 IFTEAHMSEALRAVGCKGPEPDLLLVYGPVRCHLGFPAWRIRYTEIVHMGRL-KSMRYGSLLKAIYKFTMVRQNYGKS 256 (289)
Q Consensus 180 ~i~e~~l~~~L~~~~~~~pdPDLlIrtGg~~rLsgFlpWQiryTEi~~~~~~-p~f~~~df~~AL~~Y~~rerRfGk~ 256 (289)
++++.++++|++ +++|||||+||||||.|||||||||++||||||++++ |+|++.||.+||.+|++|+||||++
T Consensus 169 -i~e~~i~~~L~~--~~~pdpDLlIRTsGe~RLSnFLlWQ~ayaEl~F~~~lWPdf~~~d~~~al~~y~~r~rRfG~~ 243 (243)
T PRK14829 169 -VTEKMISDHLYN--PDMPDVDLFLRTSGEQRTSNFLLWQSAYAELDFVPKLFPDFGRDDLWAAIDEYAHRDRRFGGV 243 (243)
T ss_pred -CCHHHHHHHhcc--CCCCCCCEEEEcCCcccccCchHHhHhheEEEeCCCCCCcCCHHHHHHHHHHHhccCccCCCC
Confidence 789999999984 7899999999999999999999999999999999996 9999999999999999999999984
No 4
>PRK14832 undecaprenyl pyrophosphate synthase; Provisional
Probab=100.00 E-value=7.2e-54 Score=390.74 Aligned_cols=187 Identities=15% Similarity=0.228 Sum_probs=164.3
Q ss_pred CCCCeEEEEEcCCCC--------------CChHHHHHHHHHHHhcCCCEEEEEeeC-CCCCcChHH---HHHHhhhc---
Q 022957 65 DKLRYLAIVIESEEA--------------YHIPAVIQLLQWLVDIGVKHVCLYDAE-GILKKSKES---ILGKLNNA--- 123 (289)
Q Consensus 65 ~~P~HlaVImdgn~~--------------~g~~~v~~i~~Wc~~~GI~~LTlYd~s-g~lKr~~~~---L~~~l~~~--- 123 (289)
.+|+|||||||||+| .|++++.+++.||.+.||++||+|+|| +||||++++ ||+++...
T Consensus 17 ~iP~HVAiImDGNrRwAk~~gl~~~~GH~~G~~~l~~i~~~c~~~gI~~lTvyaFS~EN~~Rp~~EV~~Lm~L~~~~l~~ 96 (253)
T PRK14832 17 KIPQHIAVIMDGNGRWATSQGLPRIAGHRQGARTLKELLRCCKDWGIKALTAYAFSTENWQRPIEEVDFLMLLFERLLRR 96 (253)
T ss_pred CCCCEEEEECCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEEeehhhcCCCHHHHHHHHHHHHHHHHH
Confidence 689999999999996 299999999999999999999999997 999999875 56655321
Q ss_pred -------C-----------CCCc-h-----hhhhhccCCCceEEEEEeCCCcHHHHHHHHHHHHHHHHHcCCCCcccccc
Q 022957 124 -------T-----------LFEE-A-----GESNLLLDHKHITLEFASFPDGKEAVAKAANLLFMKYVKLGGSGKIQEEK 179 (289)
Q Consensus 124 -------~-----------~~~~-~-----~~~~~t~~~~~l~l~l~s~ydGR~eIv~a~r~l~~~~~~~~~~~~~di~~ 179 (289)
+ .+|. + ..++.|+++++++||+|.+||||+||++|++++++++ +.|.+++++
T Consensus 97 ~~~~~~~~~irv~~iGd~~~Lp~~l~~~i~~~e~~T~~~~~~~Lnia~~Yggr~EI~~A~k~~~~~v-~~g~~~~~~--- 172 (253)
T PRK14832 97 ELAQMHREGVRISFIGDLSALPKSLQTEMERSMTETLNNQAIHFTVAVNYGSRNEITRACRQVAELV-QQGKLSADA--- 172 (253)
T ss_pred HHHHHHhcCCEEEEEeCchhCCHHHHHHHHHHHHHhcCCCceEEEEEecCCCHHHHHHHHHHHHHHH-HhCCCChhh---
Confidence 1 1332 1 1235689999999999999999999999999998875 667777776
Q ss_pred cccHHHHHHHHHhcCCCCCCCcEEEEeCCCcccCCCchhhhhhheEEecCCC-CCCCHHHHHHHHHHHhhhhhccCCcch
Q 022957 180 IFTEAHMSEALRAVGCKGPEPDLLLVYGPVRCHLGFPAWRIRYTEIVHMGRL-KSMRYGSLLKAIYKFTMVRQNYGKSSF 258 (289)
Q Consensus 180 ~i~e~~l~~~L~~~~~~~pdPDLlIrtGg~~rLsgFlpWQiryTEi~~~~~~-p~f~~~df~~AL~~Y~~rerRfGk~~~ 258 (289)
++++.++++|+ ++++|||||+||||||.|||||||||++||||||++.+ |+|++.||.+||.+|++|+||||+.+.
T Consensus 173 -i~e~~i~~~L~--~~~~Pd~DLlIRTsGE~RLSnFLlWQ~ayaElyF~~~lWPdf~~~df~~al~~y~~R~RRfG~~~~ 249 (253)
T PRK14832 173 -VNEQLVEQHLY--TADTPPPDLLIRTSGEMRLSNFLLWQMAYTEMYFTDILWPDFDRAAFHQALLSYQKRDRRFGQVKA 249 (253)
T ss_pred -CCHHHHHHhhC--cCCCCCCCEEEECCCcccccCcHHHHHhheEEEECCCCCCcCCHHHHHHHHHHHHhccccCCCccc
Confidence 88999999998 47899999999999999999999999999999999996 999999999999999999999999753
No 5
>PRK14834 undecaprenyl pyrophosphate synthase; Provisional
Probab=100.00 E-value=1.5e-53 Score=388.35 Aligned_cols=188 Identities=16% Similarity=0.245 Sum_probs=165.1
Q ss_pred CCCCCeEEEEEcCCCC--------------CChHHHHHHHHHHHhcCCCEEEEEeeC-CCCCcChHH---HHHHhhhc--
Q 022957 64 IDKLRYLAIVIESEEA--------------YHIPAVIQLLQWLVDIGVKHVCLYDAE-GILKKSKES---ILGKLNNA-- 123 (289)
Q Consensus 64 ~~~P~HlaVImdgn~~--------------~g~~~v~~i~~Wc~~~GI~~LTlYd~s-g~lKr~~~~---L~~~l~~~-- 123 (289)
..+|+|||||||||+| .|++++.+++.||.++||++||+|+|| +||||+.++ ||+++...
T Consensus 12 ~~~P~HVAiImDGNrRwAk~~g~~~~~GH~~G~~~l~~i~~~c~~lgI~~lTvYaFS~eN~~R~~~EV~~Lm~L~~~~l~ 91 (249)
T PRK14834 12 MSVPRHVAIIMDGNGRWAKARGLPRAAGHRAGVEALRRVVRAAGELGIGYLTLFAFSSENWSRPASEVSDLFGLLRLFIR 91 (249)
T ss_pred CCCCCeEEEEecCchHHHHHCCCchhhhHHHHHHHHHHHHHHHHHcCCCEEEEEEEeccccCCCHHHHHHHHHHHHHHHH
Confidence 3689999999999995 289999999999999999999999997 999999875 66554321
Q ss_pred --------CC-----------CCc-h-----hhhhhccCCCceEEEEEeCCCcHHHHHHHHHHHHHHHHHcCCCCccccc
Q 022957 124 --------TL-----------FEE-A-----GESNLLLDHKHITLEFASFPDGKEAVAKAANLLFMKYVKLGGSGKIQEE 178 (289)
Q Consensus 124 --------~~-----------~~~-~-----~~~~~t~~~~~l~l~l~s~ydGR~eIv~a~r~l~~~~~~~~~~~~~di~ 178 (289)
++ +|. + ..+..|+++++++||+|++||||+||++|+|++++++ +.|.+++++
T Consensus 92 ~~~~~~~~~~iri~viGd~~~Lp~~l~~~i~~~e~~T~~~~~~~lnla~~Yggr~EI~~A~k~~~~~~-~~g~~~~~d-- 168 (249)
T PRK14834 92 RDLAELHRNGVRVRVIGERAGLEADICALLNEAEELTRNNTGLNLVIAFNYGSRDEIARAVRRLAREV-AEGRLDPAS-- 168 (249)
T ss_pred HHHHHHHHCCcEEEEEcChhhCCHHHHHHHHHHHHhhccCCceEEEEEeccCCHHHHHHHHHHHHHHH-HcCCCChhh--
Confidence 11 332 1 1345689999999999999999999999999998875 677777776
Q ss_pred ccccHHHHHHHHHhcCCCCCCCcEEEEeCCCcccCCCchhhhhhheEEecCCC-CCCCHHHHHHHHHHHhhhhhccCCcc
Q 022957 179 KIFTEAHMSEALRAVGCKGPEPDLLLVYGPVRCHLGFPAWRIRYTEIVHMGRL-KSMRYGSLLKAIYKFTMVRQNYGKSS 257 (289)
Q Consensus 179 ~~i~e~~l~~~L~~~~~~~pdPDLlIrtGg~~rLsgFlpWQiryTEi~~~~~~-p~f~~~df~~AL~~Y~~rerRfGk~~ 257 (289)
++++.++++|++ +.+|||||||||||+.|||||||||++||||||++++ |+|++.+|++||.+|++|+||||+++
T Consensus 169 --I~e~~i~~~L~~--~~~pdpDLLIRTsGe~RLSnFLlWQ~~yaElyF~~~lWPdf~~~d~~~al~~y~~r~rRfG~~~ 244 (249)
T PRK14834 169 --IDAETISANLDT--ADIPDPDLIIRTSGEQRLSNFLLWQAAYSELLFVPIHWPDFDKAALEAAIEEYARRERRFGGLA 244 (249)
T ss_pred --CCHHHHHHHhcc--CCCCCCCEEEEcCCcccccCChHHhHhheEEEeCCCCCCcCCHHHHHHHHHHHHhcCccCCCCC
Confidence 889999999984 7899999999999999999999999999999999996 99999999999999999999999986
Q ss_pred h
Q 022957 258 F 258 (289)
Q Consensus 258 ~ 258 (289)
.
T Consensus 245 ~ 245 (249)
T PRK14834 245 A 245 (249)
T ss_pred c
Confidence 4
No 6
>TIGR00055 uppS undecaprenyl diphosphate synthase. Alternate name: undecaprenyl pyrophosphate synthetase. Activity has been demonstrated experimentally for members of this family from Micrococcus luteus, E. coli, Haemophilus influenzae, and Streptococcus pneumoniae.
Probab=100.00 E-value=1.3e-53 Score=383.55 Aligned_cols=180 Identities=20% Similarity=0.308 Sum_probs=159.6
Q ss_pred CeEEEEEcCCCC--------------CChHHHHHHHHHHHhcCCCEEEEEeeC-CCCCcChHH---HHHHhhhc------
Q 022957 68 RYLAIVIESEEA--------------YHIPAVIQLLQWLVDIGVKHVCLYDAE-GILKKSKES---ILGKLNNA------ 123 (289)
Q Consensus 68 ~HlaVImdgn~~--------------~g~~~v~~i~~Wc~~~GI~~LTlYd~s-g~lKr~~~~---L~~~l~~~------ 123 (289)
+|||||||||+| .|++++.+++.||.++||++||+|+|| +||||+.++ ||+++...
T Consensus 1 ~HVAiImDGNrRwAk~~gl~~~~GH~~G~~~~~~v~~~c~~~GI~~lT~yaFStEN~~Rp~~EV~~Lm~L~~~~l~~~~~ 80 (226)
T TIGR00055 1 RHVAIIMDGNGRWAKKKGKPRAYGHKAGVKSLRRILRWCANLGVECLTLYAFSTENWKRPKEEVDFLMELFEKKLDREVK 80 (226)
T ss_pred CcEEEEcCCCHHHHHHCCCChhHhHHHHHHHHHHHHHHHHHcCCCEEEEEEeehhhcCcCHHHHHHHHHHHHHHHHHHHH
Confidence 699999999996 299999999999999999999999997 999999875 66655321
Q ss_pred ----C-----------CCCch------hhhhhccCCCceEEEEEeCCCcHHHHHHHHHHHHHHHHHcCCCCccccccccc
Q 022957 124 ----T-----------LFEEA------GESNLLLDHKHITLEFASFPDGKEAVAKAANLLFMKYVKLGGSGKIQEEKIFT 182 (289)
Q Consensus 124 ----~-----------~~~~~------~~~~~t~~~~~l~l~l~s~ydGR~eIv~a~r~l~~~~~~~~~~~~~di~~~i~ 182 (289)
+ .+|.. ..++.|+++++++||+|.+||||+||++|+|++++++ +.|.+++++ ++
T Consensus 81 ~~~~~~irvr~iGd~~~Lp~~~~~~i~~~e~~T~~n~~~~lnia~~Yggr~EI~~A~~~~~~~~-~~g~~~~~~----i~ 155 (226)
T TIGR00055 81 ELHRYNVRIRIIGDLSLLSKELQEKIKKAEEDTKNNTDFTLNIAFNYGGRNEILHAVKQIAEKV-KSGKLLPED----ID 155 (226)
T ss_pred HHHHCCCEEEEEeChhhCCHHHHHHHHHHHHHhcCCCceEEEEEecCCCHHHHHHHHHHHHHHH-HhCCCChhh----CC
Confidence 1 13321 1245689999999999999999999999999999885 677787776 89
Q ss_pred HHHHHHHHHhcCCCCCCCcEEEEeCCCcccCCCchhhhhhheEEecCCC-CCCCHHHHHHHHHHHhhhhhccC
Q 022957 183 EAHMSEALRAVGCKGPEPDLLLVYGPVRCHLGFPAWRIRYTEIVHMGRL-KSMRYGSLLKAIYKFTMVRQNYG 254 (289)
Q Consensus 183 e~~l~~~L~~~~~~~pdPDLlIrtGg~~rLsgFlpWQiryTEi~~~~~~-p~f~~~df~~AL~~Y~~rerRfG 254 (289)
++.++++|+ ++++|||||+||||||.|||||||||++||||||++.+ |||++.+|.+||.+|++|+||||
T Consensus 156 e~~~~~~L~--t~~~pdpDLlIRTsGE~RLSnFLlWQ~ayaEl~F~~~lWPdF~~~~l~~al~~y~~R~RRfG 226 (226)
T TIGR00055 156 EETLNKHLY--TANLPPVDLLIRTSGEMRISNFLLWQSSYAELYFTDILWPDFDPQDFELAILDFQFRHRRFG 226 (226)
T ss_pred HHHHHHhhc--cCCCCCCCEEEeCCCcccccCcHHHHHhceEEEECCCCCCcCCHHHHHHHHHHHhccCccCC
Confidence 999999998 47899999999999999999999999999999999996 99999999999999999999999
No 7
>PRK14837 undecaprenyl pyrophosphate synthase; Provisional
Probab=100.00 E-value=1.5e-53 Score=383.51 Aligned_cols=181 Identities=17% Similarity=0.262 Sum_probs=158.3
Q ss_pred CCCCCeEEEEEcCCCC--------------CChHHHHHHHHHHHhcCCCEEEEEeeC-CCCCcChHH---HHHHhhhc--
Q 022957 64 IDKLRYLAIVIESEEA--------------YHIPAVIQLLQWLVDIGVKHVCLYDAE-GILKKSKES---ILGKLNNA-- 123 (289)
Q Consensus 64 ~~~P~HlaVImdgn~~--------------~g~~~v~~i~~Wc~~~GI~~LTlYd~s-g~lKr~~~~---L~~~l~~~-- 123 (289)
.++|+|||||||||+| .|++++.+++.||.++||++||+|+|| +||||++++ ||+++...
T Consensus 4 ~~~P~HVAiImDGNrRwAk~~gl~~~~GH~~G~~~~~~i~~~c~~~GI~~lT~YaFS~EN~~Rp~~EV~~Lm~L~~~~l~ 83 (230)
T PRK14837 4 NSLPSHVGIIMDGNRRWALKKGLSFFEGHKEGLKRAKEIVKHSLKLGIKYLSLYVFSTENWNRTDSEIEHLMFLIADYLS 83 (230)
T ss_pred CCCCCeEEEEccCCHHHHHHCCCchhhhHHHHHHHHHHHHHHHHHcCCCEEEEEEeehhhcCCCHHHHHHHHHHHHHHHH
Confidence 3689999999999996 299999999999999999999999997 999999875 66655321
Q ss_pred --------C-----------CCCch------hhhhhccCCCceEEEEEeCCCcHHHHHHHHHHHHHHHHHcCCCCccccc
Q 022957 124 --------T-----------LFEEA------GESNLLLDHKHITLEFASFPDGKEAVAKAANLLFMKYVKLGGSGKIQEE 178 (289)
Q Consensus 124 --------~-----------~~~~~------~~~~~t~~~~~l~l~l~s~ydGR~eIv~a~r~l~~~~~~~~~~~~~di~ 178 (289)
+ .+|.. ..++.|+++++++||+|.+||||+||++|+|+++. +.+++++
T Consensus 84 ~~~~~~~~~~irvr~iGd~~~Lp~~l~~~i~~~e~~T~~n~~~~Lnia~~Yggr~EI~~A~~~~~~-----~~~~~~~-- 156 (230)
T PRK14837 84 SEFNFYKKNNIKIIVSGDIESLSEEVKKSIKDAISFTKNFDGLVLNLAINYGGRNEIVRAVKKFLS-----SGLDLET-- 156 (230)
T ss_pred HHHHHHHHCCcEEEEEcChhhCCHHHHHHHHHHHHHhcCCCCcEEEEEecCCCHHHHHHHHHHHHh-----cCCChhh--
Confidence 1 13321 12356899999999999999999999999999963 3456665
Q ss_pred ccccHHHHHHHHHhcCCCCCCCcEEEEeCCCcccCCCchhhhhhheEEecCCC-CCCCHHHHHHHHHHHhhhhhccCC
Q 022957 179 KIFTEAHMSEALRAVGCKGPEPDLLLVYGPVRCHLGFPAWRIRYTEIVHMGRL-KSMRYGSLLKAIYKFTMVRQNYGK 255 (289)
Q Consensus 179 ~~i~e~~l~~~L~~~~~~~pdPDLlIrtGg~~rLsgFlpWQiryTEi~~~~~~-p~f~~~df~~AL~~Y~~rerRfGk 255 (289)
++|+.++++|+ ++++|||||+||||||+|||||||||++||||||++.+ |||++.||.+||.+|++|+||||+
T Consensus 157 --i~e~~~~~~L~--~~~~p~~DLlIRTsGE~RLSnFLLWQ~ayaElyF~d~lWPdF~~~dl~~ai~~y~~R~RrfG~ 230 (230)
T PRK14837 157 --LNENVFSKFLD--NPELPDLDLLIRTGGDMRISNFLLWRIAYCEFIFSNVLWPEYYVNHYSKDLECFKNRKRNFGR 230 (230)
T ss_pred --CCHHHHHHhhc--cCCCCCCCEEEECCCcccccccHHHhhhheEEEECCCCCccCCHHHHHHHHHHHhcccCcCCC
Confidence 89999999998 47899999999999999999999999999999999996 999999999999999999999996
No 8
>PRK14830 undecaprenyl pyrophosphate synthase; Provisional
Probab=100.00 E-value=2.4e-53 Score=387.85 Aligned_cols=186 Identities=20% Similarity=0.252 Sum_probs=163.0
Q ss_pred CCCCCeEEEEEcCCCC--------------CChHHHHHHHHHHHhcCCCEEEEEeeC-CCCCcChHH---HHHHhhhc--
Q 022957 64 IDKLRYLAIVIESEEA--------------YHIPAVIQLLQWLVDIGVKHVCLYDAE-GILKKSKES---ILGKLNNA-- 123 (289)
Q Consensus 64 ~~~P~HlaVImdgn~~--------------~g~~~v~~i~~Wc~~~GI~~LTlYd~s-g~lKr~~~~---L~~~l~~~-- 123 (289)
.++|+|||||||||+| .|++++.+++.||.+.||++||+|+|| +||||+.++ ||+++...
T Consensus 20 ~~~P~HVAiImDGNrRwAk~~gl~~~~Gh~~G~~~l~~~l~~c~~~GI~~vTvYaFS~eN~~R~~~Ev~~Lm~l~~~~l~ 99 (251)
T PRK14830 20 GNIPKHIAIIMDGNGRWAKKRMLPRIAGHKAGMDTVKKITKAASELGVKVLTLYAFSTENWKRPKDEVKFLMNLPVEFLD 99 (251)
T ss_pred CCCCCeEEEEecCchHHHHHCCCchhhhHHHHHHHHHHHHHHHHHcCCCEEEEEEEehhhcCCCHHHHHHHHHHHHHHHH
Confidence 3689999999999985 299999999999999999999999997 999999875 55544321
Q ss_pred --------C-----------CCCch------hhhhhccCCCceEEEEEeCCCcHHHHHHHHHHHHHHHHHcCCCCccccc
Q 022957 124 --------T-----------LFEEA------GESNLLLDHKHITLEFASFPDGKEAVAKAANLLFMKYVKLGGSGKIQEE 178 (289)
Q Consensus 124 --------~-----------~~~~~------~~~~~t~~~~~l~l~l~s~ydGR~eIv~a~r~l~~~~~~~~~~~~~di~ 178 (289)
+ .+|.. ..+..|+++++++||+|++||||+||++|++++++++ +.|.+++++
T Consensus 100 ~~~~~~~~~~iri~viG~~~~Lp~~~~~~~~~~e~~T~~~~~~~Lnia~~YggR~EI~~A~~~~~~~v-~~g~l~~~~-- 176 (251)
T PRK14830 100 KFVPELIENNVKVNVIGDTDRLPEHTLRALEKAIEKTKNNTGLILNFALNYGGRAEIVSAVKEIAKDV-LDGKLNPED-- 176 (251)
T ss_pred HHHHHHHHcCCEEEEEcChhhCCHHHHHHHHHHHHHccCCCceEEEEEecCCCHHHHHHHHHHHHHHH-HcCCCChHh--
Confidence 1 13321 1345689999999999999999999999999999885 677777776
Q ss_pred ccccHHHHHHHHHhcCCCCCCCcEEEEeCCCcccCCCchhhhhhheEEecCCC-CCCCHHHHHHHHHHHhhhhhccCCc
Q 022957 179 KIFTEAHMSEALRAVGCKGPEPDLLLVYGPVRCHLGFPAWRIRYTEIVHMGRL-KSMRYGSLLKAIYKFTMVRQNYGKS 256 (289)
Q Consensus 179 ~~i~e~~l~~~L~~~~~~~pdPDLlIrtGg~~rLsgFlpWQiryTEi~~~~~~-p~f~~~df~~AL~~Y~~rerRfGk~ 256 (289)
++++.++++|+ ++++|||||+||||||.|||||||||++||||||++++ |+|++.||.+||.+|++|+||||++
T Consensus 177 --I~e~~i~~~L~--~~~~pdpDLlIRTsGe~RLSnFLlWQ~ayaEl~F~~~lWPdf~~~d~~~aL~~y~~r~rrfG~~ 251 (251)
T PRK14830 177 --ITEELISNYLM--TKGLPDPDLLIRTSGELRLSNFLLWQLAYSEFYFTDVLWPDFDEEELLKAIKDYQSRQRRFGGV 251 (251)
T ss_pred --CCHHHHHHHhC--cCCCCCCCEEEeCCCCCcccCChHHHHcceEEEECCCCCCcCCHHHHHHHHHHHHhcccCCCCC
Confidence 88999999998 47899999999999999999999999999999999996 9999999999999999999999984
No 9
>PRK14838 undecaprenyl pyrophosphate synthase; Provisional
Probab=100.00 E-value=2.6e-53 Score=385.33 Aligned_cols=186 Identities=19% Similarity=0.267 Sum_probs=164.3
Q ss_pred CCCCeEEEEEcCCCC--------------CChHHHHHHHHHHHhcCCCEEEEEeeC-CCCCcChHH---HHHHhhhc---
Q 022957 65 DKLRYLAIVIESEEA--------------YHIPAVIQLLQWLVDIGVKHVCLYDAE-GILKKSKES---ILGKLNNA--- 123 (289)
Q Consensus 65 ~~P~HlaVImdgn~~--------------~g~~~v~~i~~Wc~~~GI~~LTlYd~s-g~lKr~~~~---L~~~l~~~--- 123 (289)
++|+|||||||||+| .|++++.+++.||.+.||++||+|+|| +||||++++ ||+++...
T Consensus 9 ~~P~HVAiImDGNrRwA~~~gl~~~~GH~~G~~~l~~i~~~~~~~gI~~lT~YaFS~EN~kR~~~Ev~~Lm~l~~~~l~~ 88 (242)
T PRK14838 9 RIPQHIAIIMDGNGRWAKERGKERSFGHQAGAETVHIITEEAARLGVKFLTLYTFSTENWNRPSDEVAALMSLLLDSIEE 88 (242)
T ss_pred CCCCEEEEeccCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEeechhhcCCCHHHHHHHHHHHHHHHHH
Confidence 589999999999996 299999999999999999999999997 999999875 66655321
Q ss_pred -----C-----------CCCch------hhhhhccCCCceEEEEEeCCCcHHHHHHHHHHHHHHHHHcCCCCcccccccc
Q 022957 124 -----T-----------LFEEA------GESNLLLDHKHITLEFASFPDGKEAVAKAANLLFMKYVKLGGSGKIQEEKIF 181 (289)
Q Consensus 124 -----~-----------~~~~~------~~~~~t~~~~~l~l~l~s~ydGR~eIv~a~r~l~~~~~~~~~~~~~di~~~i 181 (289)
+ .+|.. ..+..|+++++++||+|.+||||+||++|++++++++ +.|.+++++ +
T Consensus 89 ~~~~~~~irir~iG~~~~Lp~~l~~~i~~~e~~T~~~~~~~lnia~~Yggr~EI~~A~~~~~~~~-~~g~~~~~~----i 163 (242)
T PRK14838 89 ETFMKNNIRFRIIGDIAKLPEEVQERLNECEEHTAKNTGMCLVLALSYSSRWEITEATRQIATLV-QNGELNPEE----I 163 (242)
T ss_pred HHHHHcCcEEEEEeChhhCCHHHHHHHHHHHHHhcCCCceEEEEeecCCCHHHHHHHHHHHHHHH-HhCCCChhh----C
Confidence 1 13321 1345689999999999999999999999999999875 677787776 8
Q ss_pred cHHHHHHHHHhcCCCCCCCcEEEEeCCCcccCCCchhhhhhheEEecCCC-CCCCHHHHHHHHHHHhhhhhccCCcc
Q 022957 182 TEAHMSEALRAVGCKGPEPDLLLVYGPVRCHLGFPAWRIRYTEIVHMGRL-KSMRYGSLLKAIYKFTMVRQNYGKSS 257 (289)
Q Consensus 182 ~e~~l~~~L~~~~~~~pdPDLlIrtGg~~rLsgFlpWQiryTEi~~~~~~-p~f~~~df~~AL~~Y~~rerRfGk~~ 257 (289)
+++.++++|+ ++++||||||||||||.|||||||||++||||||++++ |+|++.||.+||.+|++|+||||+..
T Consensus 164 ~e~~~~~~L~--~~~~pd~DLlIRTsGE~RLSnFLlWQ~ayaEl~F~~~lWPdf~~~d~~~ai~~y~~r~RrfG~~~ 238 (242)
T PRK14838 164 TEESISEHLT--TNFMPDPDLLIRTGGEIRLSNYLLWQCAYSELYFCDTFWPDFDEEELCKAIYDYQKRERRFGKTS 238 (242)
T ss_pred CHHHHHHHhc--cCCCCCCCEEEeCCCCccccCchHHHhcceeEEeCCCCCccCCHHHHHHHHHHHHhccccCCCcc
Confidence 8999999998 47899999999999999999999999999999999996 99999999999999999999999973
No 10
>PRK14828 undecaprenyl pyrophosphate synthase; Provisional
Probab=100.00 E-value=4e-53 Score=387.32 Aligned_cols=188 Identities=18% Similarity=0.266 Sum_probs=164.8
Q ss_pred CCCCeEEEEEcCCCC---------------CChHHHHHHHHHHHhcCCCEEEEEeeC-CCCCcChHH---HHHHhhhc--
Q 022957 65 DKLRYLAIVIESEEA---------------YHIPAVIQLLQWLVDIGVKHVCLYDAE-GILKKSKES---ILGKLNNA-- 123 (289)
Q Consensus 65 ~~P~HlaVImdgn~~---------------~g~~~v~~i~~Wc~~~GI~~LTlYd~s-g~lKr~~~~---L~~~l~~~-- 123 (289)
++|+|||||||||+| .|++++.+++.||.+.||++||+|+|| +||+|+.++ ||+++.+.
T Consensus 25 ~~P~HvAiImDGNrRwA~~~gl~~~~~GH~~G~~~l~~~~~~~~~~gIk~lTvYaFS~eN~~R~~~Ev~~Lm~L~~~~l~ 104 (256)
T PRK14828 25 QVPGHVGIIVDGNRRWARKAGFTDVSQGHRAGAAKIGEFLGWCDETDVNVVTLYLLSTDNLGRPSEELNPLLDIIEDVVR 104 (256)
T ss_pred CCCCEEEEEecCChHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHcCCCEEEEEEEEhhhcCCCHHHHHHHHHHHHHHHH
Confidence 689999999999974 289999999999999999999999997 999999865 56554321
Q ss_pred -----CC-----------CCch------hhhhhccCCCceEEEEEeCCCcHHHHHHHHHHHHHHHHHcCCCCcccccccc
Q 022957 124 -----TL-----------FEEA------GESNLLLDHKHITLEFASFPDGKEAVAKAANLLFMKYVKLGGSGKIQEEKIF 181 (289)
Q Consensus 124 -----~~-----------~~~~------~~~~~t~~~~~l~l~l~s~ydGR~eIv~a~r~l~~~~~~~~~~~~~di~~~i 181 (289)
+. +|.. ..++.|+++++++||+|++||||+||++|++++++++ +.|.+++++++.++
T Consensus 105 ~~~~~~~irv~~iG~~~~lp~~~~~~~~~~e~~T~~~~~~~Lnia~~Yggr~EI~~A~~~~~~~~-~~~~~~~~~~~~~i 183 (256)
T PRK14828 105 QLAPDGRWRVRHVGSLDLLPAPSANRLKEAEEATVGNDGIKVNVAVGYGGRQEIVDAVRSLLTEH-KDKGTSIDELAESV 183 (256)
T ss_pred HHHHhCCeEEEEECChhhCCHHHHHHHHHHHHhhcCCCCcEEEEEecCCCHHHHHHHHHHHHHHH-HhCCCChhhccccC
Confidence 11 2321 1345689999999999999999999999999999886 55668887776678
Q ss_pred cHHHHHHHHHhcCCCCCCCcEEEEeCCCcccCCCchhhhhhheEEecCCC-CCCCHHHHHHHHHHHhhhhhccCC
Q 022957 182 TEAHMSEALRAVGCKGPEPDLLLVYGPVRCHLGFPAWRIRYTEIVHMGRL-KSMRYGSLLKAIYKFTMVRQNYGK 255 (289)
Q Consensus 182 ~e~~l~~~L~~~~~~~pdPDLlIrtGg~~rLsgFlpWQiryTEi~~~~~~-p~f~~~df~~AL~~Y~~rerRfGk 255 (289)
+++.++++|++ +++|||||+||||||.|||||||||++||||||++++ |+|++.||.+||.+|++|+|||||
T Consensus 184 ~e~~i~~~L~~--~~~P~pDLlIRTsGE~RLSnFLlWQ~ayaElyF~~~lWPdf~~~dl~~al~~y~~r~RRfG~ 256 (256)
T PRK14828 184 TVDAISTHLYT--GGQPDPDLVIRTSGEQRLSGFMLWQSAHSEYYFCETYWPAFRKVDFLRALRDYSQRERRFGK 256 (256)
T ss_pred CHHHHHHHhcc--CCCCCCCEEEeCCCCCcccCChHHHhhheEEEeCCCCCccCCHHHHHHHHHHHHhhhccCCC
Confidence 99999999984 6899999999999999999999999999999999996 999999999999999999999997
No 11
>PRK14842 undecaprenyl pyrophosphate synthase; Provisional
Probab=100.00 E-value=3.7e-53 Score=383.86 Aligned_cols=186 Identities=17% Similarity=0.228 Sum_probs=161.7
Q ss_pred CCCCeEEEEEcCCCC--------------CChHHHHHHHHHHHhcCCCEEEEEeeC-CCCCcChHH---HHHHhhhc---
Q 022957 65 DKLRYLAIVIESEEA--------------YHIPAVIQLLQWLVDIGVKHVCLYDAE-GILKKSKES---ILGKLNNA--- 123 (289)
Q Consensus 65 ~~P~HlaVImdgn~~--------------~g~~~v~~i~~Wc~~~GI~~LTlYd~s-g~lKr~~~~---L~~~l~~~--- 123 (289)
.+|+|||||||||+| .|++++.+++.||.+.||++||+|+|| +||||++++ ||+++...
T Consensus 7 ~~P~HVaiImDGNrRwAk~~gl~~~~GH~~G~~~l~~i~~~c~~lgI~~vTvYaFS~eN~~R~~~EV~~Lm~L~~~~l~~ 86 (241)
T PRK14842 7 TIPAHIAVIMDGNGRWAESQGKKRSEGHREGANAIDRLMDASLEYGLKNISLYAFSTENWKRPITEIRSIFGLLVEFIET 86 (241)
T ss_pred CCCCeEEEEcCCCHHHHHHCCCChhHhHHHHHHHHHHHHHHHHHcCCCEEEEEEeehhhcCCCHHHHHHHHHHHHHHHHH
Confidence 679999999999996 299999999999999999999999997 999999875 66555321
Q ss_pred -------C-----------CCCc-h-----hhhhhccCCCceEEEEEeCCCcHHHHHHHHHHHHHHHHHcCCCCcccccc
Q 022957 124 -------T-----------LFEE-A-----GESNLLLDHKHITLEFASFPDGKEAVAKAANLLFMKYVKLGGSGKIQEEK 179 (289)
Q Consensus 124 -------~-----------~~~~-~-----~~~~~t~~~~~l~l~l~s~ydGR~eIv~a~r~l~~~~~~~~~~~~~di~~ 179 (289)
+ .+|. + ..++.|+++++++||+|.+||||+||++|++++++++ +.+..+++.
T Consensus 87 ~~~~~~~~~irv~~iG~~~~Lp~~l~~~i~~~e~~T~~~~~~~Lnia~~Yggr~EI~~A~~~~~~~~-~~~~~~~~~--- 162 (241)
T PRK14842 87 RLDTIHARGIRIHHSGSRKKLTRTVLDKIDFAMAKTKKNKNLTVNFCLNYGSHDELLRAAQEVFLAR-KAKKVTLEK--- 162 (241)
T ss_pred HHHHHHHCCCEEEEEeChhhCCHHHHHHHHHHHHHhcCCCceEEEEEecCCCHHHHHHHHHHHHHHH-HcCCCCccc---
Confidence 1 1332 1 1245689999999999999999999999999999885 455555431
Q ss_pred cccHHHHHHHHHhcCCCCCCCcEEEEeCCCcccCCCchhhhhhheEEecCCC-CCCCHHHHHHHHHHHhhhhhccCCc
Q 022957 180 IFTEAHMSEALRAVGCKGPEPDLLLVYGPVRCHLGFPAWRIRYTEIVHMGRL-KSMRYGSLLKAIYKFTMVRQNYGKS 256 (289)
Q Consensus 180 ~i~e~~l~~~L~~~~~~~pdPDLlIrtGg~~rLsgFlpWQiryTEi~~~~~~-p~f~~~df~~AL~~Y~~rerRfGk~ 256 (289)
+++++.++++|+ +++.|||||+||||||.|||||||||++||||||++++ |||++.||.+||.+|++|+||||++
T Consensus 163 ~i~e~~~~~~L~--t~~~p~pDLlIRTsGE~RLSnFLlWQ~ayaEl~F~~~lWPdF~~~dl~~al~~y~~R~RrfG~~ 238 (241)
T PRK14842 163 PLKEKEFEKFLY--TSPLPPVDLLIRTAGEQRLSNFLLWQSAYAELYFTDTLWPDFDKNSLVDSLKWYETRTRKFGGL 238 (241)
T ss_pred cCCHHHHHHHhC--cCCCCCCCEEEECCCcccccCCHHHHHhceEEEECCCCCccCCHHHHHHHHHHHhccccccCCc
Confidence 389999999998 47899999999999999999999999999999999996 9999999999999999999999996
No 12
>PRK14827 undecaprenyl pyrophosphate synthase; Provisional
Probab=100.00 E-value=3e-53 Score=393.71 Aligned_cols=185 Identities=18% Similarity=0.262 Sum_probs=162.7
Q ss_pred CCCCeEEEEEcCCCC--------------CChHHHHHHHHHHHhcCCCEEEEEeeC-CCCCcChHH---HHHHhhhc---
Q 022957 65 DKLRYLAIVIESEEA--------------YHIPAVIQLLQWLVDIGVKHVCLYDAE-GILKKSKES---ILGKLNNA--- 123 (289)
Q Consensus 65 ~~P~HlaVImdgn~~--------------~g~~~v~~i~~Wc~~~GI~~LTlYd~s-g~lKr~~~~---L~~~l~~~--- 123 (289)
.+|+|||||||||+| .|++++.+++.||.++||++||||+|| +||||+.++ ||+++...
T Consensus 66 ~iP~HVAiIMDGNrRwAk~~gl~~~~GH~~G~~~l~~v~~~c~~lGI~~lTvYaFStEN~kR~~~EV~~Lm~L~~~~l~~ 145 (296)
T PRK14827 66 RLPNHVAIVMDGNGRWATQRGLARTEGHKMGEAVVIDIACGAIELGIKWLSLYAFSTENWKRSPEEVRFLMGFNRDVVRR 145 (296)
T ss_pred CCCCeEEEeccCchHHHHHCCCCHhHHHHHHHHHHHHHHHHHHHcCCCEEEEeeecchhhcCCHHHHHHHHHHHHHHHHH
Confidence 679999999999996 299999999999999999999999996 999999875 66554321
Q ss_pred -------CC-----------CCc-h-----hhhhhccCCCceEEEEEeCCCcHHHHHHHHHHHHHHHHHcCCCCcccccc
Q 022957 124 -------TL-----------FEE-A-----GESNLLLDHKHITLEFASFPDGKEAVAKAANLLFMKYVKLGGSGKIQEEK 179 (289)
Q Consensus 124 -------~~-----------~~~-~-----~~~~~t~~~~~l~l~l~s~ydGR~eIv~a~r~l~~~~~~~~~~~~~di~~ 179 (289)
++ +|. + ..++.|+++++++||+|++||||+||++|++++++++ +.|.+++++
T Consensus 146 ~~~~~~~~~irir~iG~~~~Lp~~v~~~i~~~e~~T~~n~~~~Lnia~~YgGR~EI~~A~~~i~~~v-~~g~l~~~~--- 221 (296)
T PRK14827 146 RRDNLNKMGVRIRWVGSRPRLWRSVINELAIAEEMTKSNDVITINYCVNYGGRTEITEATREIAREA-AAGRLNPER--- 221 (296)
T ss_pred HHHHHHHCCcEEEEEechhhCCHHHHHHHHHHHHHhcCCCCeEEEEEecCCCHHHHHHHHHHHHHHH-HcCCCChhh---
Confidence 11 222 1 1235689999999999999999999999999999885 667777776
Q ss_pred cccHHHHHHHHHhcCCCCCCCcEEEEeCCCcccCCCchhhhhhheEEecCCC-CCCCHHHHHHHHHHHhhhhhccCCc
Q 022957 180 IFTEAHMSEALRAVGCKGPEPDLLLVYGPVRCHLGFPAWRIRYTEIVHMGRL-KSMRYGSLLKAIYKFTMVRQNYGKS 256 (289)
Q Consensus 180 ~i~e~~l~~~L~~~~~~~pdPDLlIrtGg~~rLsgFlpWQiryTEi~~~~~~-p~f~~~df~~AL~~Y~~rerRfGk~ 256 (289)
++++.++++|++ +++|||||+||||||.|||||||||++||||||++++ |||++.||.+||.+|++|+||||+.
T Consensus 222 -I~e~~i~~~L~t--~~~PdpDLlIRTsGE~RLSnFLLWQ~ayaEl~F~d~lWPdF~~~dl~~al~~y~~R~RRfG~~ 296 (296)
T PRK14827 222 -ITESTIARHLQR--PDIPDVDLFLRTSGEQRSSNFMLWQAAYAEYIFQDKLWPDYDRRDLWAACEEYASRNRRFGSA 296 (296)
T ss_pred -ccHHHHHHHhcc--CCCCCCCEEEecCCcccccCchHhhhhheEEEecCCCCccCCHHHHHHHHHHHhhccccCCCC
Confidence 889999999984 7899999999999999999999999999999999996 9999999999999999999999974
No 13
>PRK14841 undecaprenyl pyrophosphate synthase; Provisional
Probab=100.00 E-value=5e-53 Score=381.79 Aligned_cols=185 Identities=17% Similarity=0.291 Sum_probs=160.0
Q ss_pred CCCCCeEEEEEcCCCC--------------CChHHHHHHHHHHHhcCCCEEEEEeeC-CCCCcChHH---HHHHhhhc--
Q 022957 64 IDKLRYLAIVIESEEA--------------YHIPAVIQLLQWLVDIGVKHVCLYDAE-GILKKSKES---ILGKLNNA-- 123 (289)
Q Consensus 64 ~~~P~HlaVImdgn~~--------------~g~~~v~~i~~Wc~~~GI~~LTlYd~s-g~lKr~~~~---L~~~l~~~-- 123 (289)
+++|+|||||||||+| .|++++.+++.||.+.||++||||+|| +||||+.++ ||+++.+.
T Consensus 1 ~~~P~HVaiImDGNrRwAk~~g~~~~~GH~~G~~~l~~i~~~~~~lgIk~lTvYaFS~eN~~R~~~Ev~~Lm~L~~~~l~ 80 (233)
T PRK14841 1 MRIPQHVAIIMDGNGRWAKKRGLPRIKGHQRGAEVLHNTVKWSLELGIKYLTAFSFSTENWKRPKEEVEFLMDLFVQMID 80 (233)
T ss_pred CCCCCEEEEEccCCHHHHHHCCCchhhhHHHHHHHHHHHHHHHHHcCCCEEEEEeeeHhhcCCCHHHHHHHHHHHHHHHH
Confidence 3689999999999996 299999999999999999999999997 999999875 56655321
Q ss_pred --------C-----------CCCch------hhhhhccCCCceEEEEEeCCCcHHHHHHHHHHHHHHHHHcCCCCccccc
Q 022957 124 --------T-----------LFEEA------GESNLLLDHKHITLEFASFPDGKEAVAKAANLLFMKYVKLGGSGKIQEE 178 (289)
Q Consensus 124 --------~-----------~~~~~------~~~~~t~~~~~l~l~l~s~ydGR~eIv~a~r~l~~~~~~~~~~~~~di~ 178 (289)
+ .+|.. ..++.|+++++++||+|.+||||+||++|+++++.++. .|.. ++
T Consensus 81 ~~~~~~~~~~irvr~iG~~~~Lp~~~~~~i~~~e~~T~~~~~~~Lnia~~Yggr~EI~~A~~~~~~~~~-~~~~--~~-- 155 (233)
T PRK14841 81 REMELLRRERVRVRILGRKEGLPEKVLKKWQEVEEKTKEFDRMTLVIAFNYGGRREILDAVESILKDVS-QGKK--IE-- 155 (233)
T ss_pred HHHHHHHHcCcEEEEEeChhhCCHHHHHHHHHHHHHhcCCCCcEEEEEecCCCHHHHHHHHHHHHHHHH-cCCc--CC--
Confidence 1 13321 13456899999999999999999999999999988763 3432 22
Q ss_pred ccccHHHHHHHHHhcCCCCCCCcEEEEeCCCcccCCCchhhhhhheEEecCCC-CCCCHHHHHHHHHHHhhhhhccCCcc
Q 022957 179 KIFTEAHMSEALRAVGCKGPEPDLLLVYGPVRCHLGFPAWRIRYTEIVHMGRL-KSMRYGSLLKAIYKFTMVRQNYGKSS 257 (289)
Q Consensus 179 ~~i~e~~l~~~L~~~~~~~pdPDLlIrtGg~~rLsgFlpWQiryTEi~~~~~~-p~f~~~df~~AL~~Y~~rerRfGk~~ 257 (289)
++++.++++|+ ++++||||||||||||+|||||||||++||||||++.+ |+|++.||.+||.+|++|+||||++.
T Consensus 156 --i~~~~~~~~L~--~~~~pdpDLlIRTsGE~RLSnFLlWQ~ayaElyF~~~lWPdf~~~dl~~al~~y~~r~rrfG~~~ 231 (233)
T PRK14841 156 --LTEETFRQYLY--LPDVPDPDLIIRTSGEMRLSNFLLWQSAYSELYFFKKLWPDFTKRDFLRAIESYSKRERRFGGLI 231 (233)
T ss_pred --CCHHHHHHHhc--cCCCCCCCEEEeCCCCccccCcHHHHhhceeEEECCCCCCcCCHHHHHHHHHHHHhcCccCCCCC
Confidence 78999999998 47899999999999999999999999999999999996 99999999999999999999999974
No 14
>PRK14840 undecaprenyl pyrophosphate synthase; Provisional
Probab=100.00 E-value=5.9e-53 Score=384.17 Aligned_cols=185 Identities=21% Similarity=0.275 Sum_probs=162.8
Q ss_pred CCCCCeEEEEEcCCCC-----C-------------ChHHHHHHHHHHHhcCCCEEEEEeeC-CCCCcChHH---HHHHhh
Q 022957 64 IDKLRYLAIVIESEEA-----Y-------------HIPAVIQLLQWLVDIGVKHVCLYDAE-GILKKSKES---ILGKLN 121 (289)
Q Consensus 64 ~~~P~HlaVImdgn~~-----~-------------g~~~v~~i~~Wc~~~GI~~LTlYd~s-g~lKr~~~~---L~~~l~ 121 (289)
..+|+|||||||||+| + |++++.+++.||.+.||++||+|+|| +||||++++ ||+++.
T Consensus 16 ~~~P~HVaiImDGNrRwAk~~~~~~gl~~~~GH~~G~~~l~~v~~~c~~~GIk~lTvYaFS~EN~~R~~~EV~~Lm~L~~ 95 (250)
T PRK14840 16 QSLPRHVAIIMDGNRRWYRKHEQFCQKRAISGHYYGAKSLPQIVDTALHLGIEVLTLFAFSTENFSRSKEEVAELFSLFN 95 (250)
T ss_pred CCCCCeEEEEcCCChHHHhhCCCccCCCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEEeehhhcCCCHHHHHHHHHHHH
Confidence 4789999999999984 1 89999999999999999999999997 999999875 665553
Q ss_pred hc----------C-----------CCCc-h-----hhhhhccCCCceEEEEEeCCCcHHHHHHHHHHHHHHHHHcCCCCc
Q 022957 122 NA----------T-----------LFEE-A-----GESNLLLDHKHITLEFASFPDGKEAVAKAANLLFMKYVKLGGSGK 174 (289)
Q Consensus 122 ~~----------~-----------~~~~-~-----~~~~~t~~~~~l~l~l~s~ydGR~eIv~a~r~l~~~~~~~~~~~~ 174 (289)
.. + .+|. + ..+..|+++++++||+|++||||+||++|++++++++ +.|.+++
T Consensus 96 ~~l~~~~~~~~~~~irvr~iGd~~~Lp~~l~~~i~~~e~~T~~~~~~~Lnla~~Yggr~EI~~A~~~~~~~v-~~~~~~~ 174 (250)
T PRK14840 96 SQLDSQLPYLHENEIRLRCIGDLSKLPQELQNNIEQASSATAHYSRMELVLAINYGGKDELVRAFKKLHQDL-ANKKISS 174 (250)
T ss_pred HHHHHHHHHHHHCCCEEEEEeChhhCCHHHHHHHHHHHHHhccCCceEEEEEecCCcHHHHHHHHHHHHHHH-HhCCCCh
Confidence 21 1 1332 1 1345689999999999999999999999999999875 6777877
Q ss_pred ccccccccHHHHHHHHHhcCCCCCCCcEEEEeCCCcccCCCchhhhhhheEEecCCC-CCCCHHHHHHHHHHHhhhhhcc
Q 022957 175 IQEEKIFTEAHMSEALRAVGCKGPEPDLLLVYGPVRCHLGFPAWRIRYTEIVHMGRL-KSMRYGSLLKAIYKFTMVRQNY 253 (289)
Q Consensus 175 ~di~~~i~e~~l~~~L~~~~~~~pdPDLlIrtGg~~rLsgFlpWQiryTEi~~~~~~-p~f~~~df~~AL~~Y~~rerRf 253 (289)
++ ++++.++++|+ ++++|||||+|||||+.|||||||||++||||||++++ |+|++.||.+||.+|++|+|||
T Consensus 175 ~~----i~~~~i~~~L~--~~~~pdpDLlIRTsGe~RLSnFLlWQ~ayaEl~F~~~lWPdf~~~df~~al~~y~~R~Rrf 248 (250)
T PRK14840 175 DD----ISEELISSYLD--TSGLPDPDLLIRTGGEMRVSNFLLWQIAYTELYVTDVLWPDFTPNDLLEAIKTYQQRSRRG 248 (250)
T ss_pred hh----CCHHHHHHHhc--cCCCCCCCEEEeCCCCcccccchHHhHhceeEEECCCCCCcCCHHHHHHHHHHHhcccCcC
Confidence 76 88999999998 47899999999999999999999999999999999996 9999999999999999999999
Q ss_pred CC
Q 022957 254 GK 255 (289)
Q Consensus 254 Gk 255 (289)
||
T Consensus 249 G~ 250 (250)
T PRK14840 249 GK 250 (250)
T ss_pred CC
Confidence 97
No 15
>PRK14835 undecaprenyl pyrophosphate synthase; Provisional
Probab=100.00 E-value=1.8e-52 Score=385.89 Aligned_cols=189 Identities=17% Similarity=0.327 Sum_probs=165.7
Q ss_pred CCCCCeEEEEEcCCCC--------------CChHHHHHHHHHHHhcCCCEEEEEeeC-CCCCcChHH---HHHHhhhc--
Q 022957 64 IDKLRYLAIVIESEEA--------------YHIPAVIQLLQWLVDIGVKHVCLYDAE-GILKKSKES---ILGKLNNA-- 123 (289)
Q Consensus 64 ~~~P~HlaVImdgn~~--------------~g~~~v~~i~~Wc~~~GI~~LTlYd~s-g~lKr~~~~---L~~~l~~~-- 123 (289)
..+|+|||||||||+| .|++++.+++.||.+.||++||+|+|| +||||+.++ ||+++...
T Consensus 39 ~~~P~HVAiImDGNrRwAk~~g~~~~~GH~~G~~~l~~i~~~c~~lGIk~lTvYaFS~EN~~R~~~EV~~Lm~L~~~~l~ 118 (275)
T PRK14835 39 GKLPRHLGLILDGNRRFARALGLQREMGHEFGVQKAYEVLEWCLELGIPTVTIWVFSTDNFSRSPAEVETLMNLFEREAR 118 (275)
T ss_pred CCCCCEEEEEecCchHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEEEEccccCCCHHHHHHHHHHHHHHHH
Confidence 3689999999999996 299999999999999999999999997 999999874 66554321
Q ss_pred ----------CC-----------CCc-h-----hhhhhccCCCceEEEEEeCCCcHHHHHHHHHHHHHHHHHcCCCCccc
Q 022957 124 ----------TL-----------FEE-A-----GESNLLLDHKHITLEFASFPDGKEAVAKAANLLFMKYVKLGGSGKIQ 176 (289)
Q Consensus 124 ----------~~-----------~~~-~-----~~~~~t~~~~~l~l~l~s~ydGR~eIv~a~r~l~~~~~~~~~~~~~d 176 (289)
++ +|. + ..+..|+++++++||+|.+||||+||++|++++++++ +.|.+++++
T Consensus 119 ~~~~~~~~~~~~irir~iGd~~~Lp~~l~~~i~~~e~~T~~~~~~~Lnia~~Yggr~EI~~A~k~i~~~~-~~g~~~~~~ 197 (275)
T PRK14835 119 RMAVDPRIHANRVRVRAIGRHDGFPPKVLEALEELEERTEGHEGMLLNIAVGYGGREEIVDAVKSLLLEA-AATGKSPEE 197 (275)
T ss_pred HHhchhhhhhCCeEEEEecChhhCCHHHHHHHHHHHHHhcCCCCeEEEEEeccCCHHHHHHHHHHHHHHH-HcCCCChHH
Confidence 11 222 1 1235689999999999999999999999999998875 677788888
Q ss_pred ccccccHHHHHHHHHhcCCCCCCCcEEEEeCCCcccCCCchhhhhhheEEecCCC-CCCCHHHHHHHHHHHhhhhhccCC
Q 022957 177 EEKIFTEAHMSEALRAVGCKGPEPDLLLVYGPVRCHLGFPAWRIRYTEIVHMGRL-KSMRYGSLLKAIYKFTMVRQNYGK 255 (289)
Q Consensus 177 i~~~i~e~~l~~~L~~~~~~~pdPDLlIrtGg~~rLsgFlpWQiryTEi~~~~~~-p~f~~~df~~AL~~Y~~rerRfGk 255 (289)
++.+++|+.++++|++ ++.||||||||||||.|||||||||++||||||++++ |+|++.||.+||.+||+|+||||+
T Consensus 198 i~~~~~e~~i~~~L~~--~~~p~pDLLIRTsGE~RLSnFLLWQsayaElyF~d~lWPdF~~~d~~~ai~~yq~r~rRfG~ 275 (275)
T PRK14835 198 VAAELTPEHISAHLYT--AGVPDPDFIIRTSGEIRLSGFLLWQSAYSEYYFCDVYWPGFRKVDFLRALRDYQGRERRFGR 275 (275)
T ss_pred hcccCCHHHHHHHhcc--CCCCCCCEEEecCCCccccCCHHHhhhheEEEeCCCCCCcCCHHHHHHHHHHHHhhcccCCC
Confidence 7667899999999984 7899999999999999999999999999999999996 999999999999999999999996
No 16
>COG0020 UppS Undecaprenyl pyrophosphate synthase [Lipid metabolism]
Probab=100.00 E-value=2.9e-52 Score=378.87 Aligned_cols=185 Identities=22% Similarity=0.359 Sum_probs=163.4
Q ss_pred CCCCeEEEEEcCCCC--------------CChHHHHHHHHHHHhcCCCEEEEEeeC-CCCCcChHH---HHHHhhhc---
Q 022957 65 DKLRYLAIVIESEEA--------------YHIPAVIQLLQWLVDIGVKHVCLYDAE-GILKKSKES---ILGKLNNA--- 123 (289)
Q Consensus 65 ~~P~HlaVImdgn~~--------------~g~~~v~~i~~Wc~~~GI~~LTlYd~s-g~lKr~~~~---L~~~l~~~--- 123 (289)
.+|+|||||||||++ .|++.+.+++.||.++||++||+|+|| +||+|+.++ ||+++...
T Consensus 15 ~~p~HvaiImDGN~RwAk~~~~~r~~Gh~~G~~~~~~i~~~~~~lgik~ltlyafSteN~~Rp~~Ev~~lm~l~~~~l~~ 94 (245)
T COG0020 15 RLPRHVAIIMDGNRRWAKKRGLPRIEGHKAGAKALREILEWCLELGIKYLTLYAFSTENWKRPKEEVSFLMELFEKALRE 94 (245)
T ss_pred ccccceEEEecCChHHHHhCCCChhHHHHHhHHHHHHHHHHHHHcCCCEEEEEEEehhhcCCCHHHHHHHHHHHHHHHHH
Confidence 679999999999985 299999999999999999999999997 899999874 55544321
Q ss_pred -------C-----------CCCc-h-----hhhhhccCCCceEEEEEeCCCcHHHHHHHHHHHHHHHHHcCCCCcccccc
Q 022957 124 -------T-----------LFEE-A-----GESNLLLDHKHITLEFASFPDGKEAVAKAANLLFMKYVKLGGSGKIQEEK 179 (289)
Q Consensus 124 -------~-----------~~~~-~-----~~~~~t~~~~~l~l~l~s~ydGR~eIv~a~r~l~~~~~~~~~~~~~di~~ 179 (289)
+ .+|. + .++..|+++++++|++|++||||+||++|+|++++++ +.|++++++
T Consensus 95 ~~~~l~~~~v~v~~iG~~~~l~~~~~~~i~~~e~~t~~~~~~~l~~a~nYGGR~eI~~avr~ia~~v-~~g~l~~~~--- 170 (245)
T COG0020 95 ELKKLHKNGVRIRIIGDLSRLPEEVREAIEKAEEKTKNNTGLTLNIAVNYGGRDEIVDAVRKIAEDV-AAGKLSPED--- 170 (245)
T ss_pred HHHHHhhcCeEEEEEeccccCCHHHHHHHHHHHHhccCCCceEEEEeeCCCCHHHHHHHHHHHHHHH-HcCCCChHH---
Confidence 1 1221 1 1345789999999999999999999999999998875 778888887
Q ss_pred cccHHHHHHHHHhcCCCCCCCcEEEEeCCCcccCCCchhhhhhheEEecCCC-CCCCHHHHHHHHHHHhhhhhccCCc
Q 022957 180 IFTEAHMSEALRAVGCKGPEPDLLLVYGPVRCHLGFPAWRIRYTEIVHMGRL-KSMRYGSLLKAIYKFTMVRQNYGKS 256 (289)
Q Consensus 180 ~i~e~~l~~~L~~~~~~~pdPDLlIrtGg~~rLsgFlpWQiryTEi~~~~~~-p~f~~~df~~AL~~Y~~rerRfGk~ 256 (289)
++|+.++++|++ .++|||||+|||||+.|||||||||++||||||+|.+ |||++.||.+||++||+|+||||++
T Consensus 171 -I~e~~i~~~L~~--~~~pdpDLlIRTsGe~RlSnFllWQ~aYsElyF~d~lWPdf~~~d~~~ai~~yq~R~rrfG~~ 245 (245)
T COG0020 171 -IDEELISSHLYT--SGLPDPDLLIRTSGEQRLSNFLLWQSAYSELYFTDVLWPDFRREDLLRAIRDYQKRERRFGRV 245 (245)
T ss_pred -cCHHHHHHhhcc--cCCCCCCEEEeCCCcccccccHHHHHHhCeEEeccccCCCCCHHHHHHHHHHHHhccccccCC
Confidence 899999999995 7999999999999999999999999999999999996 9999999999999999999999985
No 17
>PRK14833 undecaprenyl pyrophosphate synthase; Provisional
Probab=100.00 E-value=6.2e-52 Score=374.68 Aligned_cols=183 Identities=20% Similarity=0.254 Sum_probs=157.7
Q ss_pred CCCCeEEEEEcCCCC--------------CChHHHHHHHHHHHhcCCCEEEEEeeC-CCCCcChHH---HHHHhhhc---
Q 022957 65 DKLRYLAIVIESEEA--------------YHIPAVIQLLQWLVDIGVKHVCLYDAE-GILKKSKES---ILGKLNNA--- 123 (289)
Q Consensus 65 ~~P~HlaVImdgn~~--------------~g~~~v~~i~~Wc~~~GI~~LTlYd~s-g~lKr~~~~---L~~~l~~~--- 123 (289)
++|+|||||||||+| .|++++.+++.||.+.||++||+|+|| +||||+.++ ||+++...
T Consensus 3 ~~P~HVaiImDGNrRwA~~~gl~~~~GH~~G~~~l~~~~~~c~~~gI~~lTvyaFS~eN~~R~~~Ev~~Lm~L~~~~l~~ 82 (233)
T PRK14833 3 NTLKHLAIIMDGNGRWAKLRGKARAAGHKKGVKTLREITIWCANHKLECLTLYAFSTENWKRPKSEVDFLMKLLKKYLKD 82 (233)
T ss_pred CCCCeEEEEccCCHHHHHHCCCChhhhHHHHHHHHHHHHHHHHHcCCCEEEEeecchhhcCcCHHHHHHHHHHHHHHHHH
Confidence 579999999999996 299999999999999999999999997 999999875 56554321
Q ss_pred -------C-----------CCCc-h-----hhhhhccCCCceEEEEEeCCCcHHHHHHHHHHHHHHHH-HcCCCCccccc
Q 022957 124 -------T-----------LFEE-A-----GESNLLLDHKHITLEFASFPDGKEAVAKAANLLFMKYV-KLGGSGKIQEE 178 (289)
Q Consensus 124 -------~-----------~~~~-~-----~~~~~t~~~~~l~l~l~s~ydGR~eIv~a~r~l~~~~~-~~~~~~~~di~ 178 (289)
+ .+|. + ..++.|+++++++||+|.+||||+||++|++++++++. +.+. .
T Consensus 83 ~~~~~~~~~irvr~iG~~~~Lp~~~~~~i~~~e~~T~~~~~~~Lnia~~Y~gr~EI~~A~~~~~~~~~~~~~~---~--- 156 (233)
T PRK14833 83 ERSTYLENNIRFKAIGDLEGFSKELRDTILQLEEDTRSFKGFTQVLALNYGSKDEISRAFKKLLESPPSHIGE---L--- 156 (233)
T ss_pred HHHHHHhCCcEEEEEeChhhCCHHHHHHHHHHHHHccCCCceEEEEEecCCCHHHHHHHHHHHHHHhhcccCc---c---
Confidence 1 1332 1 12456899999999999999999999999999987641 1121 1
Q ss_pred ccccHHHHHHHHHhcCCCCCCCcEEEEeCCCcccCCCchhhhhhheEEecCCC-CCCCHHHHHHHHHHHhhhhhccCCc
Q 022957 179 KIFTEAHMSEALRAVGCKGPEPDLLLVYGPVRCHLGFPAWRIRYTEIVHMGRL-KSMRYGSLLKAIYKFTMVRQNYGKS 256 (289)
Q Consensus 179 ~~i~e~~l~~~L~~~~~~~pdPDLlIrtGg~~rLsgFlpWQiryTEi~~~~~~-p~f~~~df~~AL~~Y~~rerRfGk~ 256 (289)
+++++.++++|+ ++++||||||||||||.|||||||||++||||||++.+ |+|++.||.+||.+|++|+||||+.
T Consensus 157 -~i~e~~l~~~L~--~~~~p~pDLlIRTsGE~RLSnFLlWQ~ayaElyF~~~lWPdf~~~dl~~al~~y~~r~rrfG~~ 232 (233)
T PRK14833 157 -ESLEEEISNCLD--TADLPEVDLLIRTGGEMRLSNFLLWQSSYAELFFTPILWPDFTPKDLENIISDFYKRVRKFGGL 232 (233)
T ss_pred -cCCHHHHHHHhc--cCCCCCCCEEEECCCCccccccHHHHHhceeEEECCCCCCcCCHHHHHHHHHHHHhhhhhccCC
Confidence 388999999998 47899999999999999999999999999999999996 9999999999999999999999986
No 18
>PRK14839 undecaprenyl pyrophosphate synthase; Provisional
Probab=100.00 E-value=1.6e-51 Score=371.84 Aligned_cols=181 Identities=18% Similarity=0.271 Sum_probs=156.9
Q ss_pred hcCCCCCCeEEEEEcCCCC--------------CChHHHHHHHHHHHhcCCCEEEEEeeC-CCCCcChHH---HHHHhhh
Q 022957 61 ALDIDKLRYLAIVIESEEA--------------YHIPAVIQLLQWLVDIGVKHVCLYDAE-GILKKSKES---ILGKLNN 122 (289)
Q Consensus 61 ~~~~~~P~HlaVImdgn~~--------------~g~~~v~~i~~Wc~~~GI~~LTlYd~s-g~lKr~~~~---L~~~l~~ 122 (289)
.++.+.|+|||||||||+| .|++++.+++.||.+.||++||+|+|| +||||++++ ||+++..
T Consensus 4 ~~~~~~P~HVAiImDGNrRwAk~~gl~~~~GH~~G~~~l~~i~~~c~~~GI~~lTvYaFS~EN~~R~~~EV~~Lm~L~~~ 83 (239)
T PRK14839 4 SLDRRSGLHVAIIMDGNGRWATARGLPRLAGHRAGVEAIRRVVEAAPDLGIGTLTLYAFSSDNWRRPAAEVGGLMRLLRA 83 (239)
T ss_pred ccCCCCCCEEEEEcCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEEechhhcCCCHHHHHHHHHHHHH
Confidence 3556789999999999996 299999999999999999999999997 999999875 6655532
Q ss_pred c----------C-----------CCCch------hhhhhccCCCceEEEEEeCCCcHHHHHHHHHHHHHHHHHcCCCCcc
Q 022957 123 A----------T-----------LFEEA------GESNLLLDHKHITLEFASFPDGKEAVAKAANLLFMKYVKLGGSGKI 175 (289)
Q Consensus 123 ~----------~-----------~~~~~------~~~~~t~~~~~l~l~l~s~ydGR~eIv~a~r~l~~~~~~~~~~~~~ 175 (289)
. + .+|.. ..++.|+++++++||+|.+||||+||++|+++++ .++
T Consensus 84 ~l~~~~~~~~~~~irvr~iGd~~~Lp~~l~~~i~~~e~~T~~n~~~~Lnia~~Yggr~EI~~A~k~~~---------~~~ 154 (239)
T PRK14839 84 YLRNETERLARNGVRLTVIGRRDRLPDGIPEAIARAEAATAGGDRLHLRIAVDYSARDAILAAAAKAL---------GPE 154 (239)
T ss_pred HHHHHHHHHHHCCCEEEEEeChhhCCHHHHHHHHHHHHHhcCCCceEEEEEecCCCHHHHHHHHHHhc---------Ccc
Confidence 1 1 13321 1345789999999999999999999999999863 234
Q ss_pred cccccccHHHHHHHHHhcCCCCCCCcEEEEeCCCcccCCCchhhhhhheEEecCCC-CCCCHHHHHHHHHHHhhhhhccC
Q 022957 176 QEEKIFTEAHMSEALRAVGCKGPEPDLLLVYGPVRCHLGFPAWRIRYTEIVHMGRL-KSMRYGSLLKAIYKFTMVRQNYG 254 (289)
Q Consensus 176 di~~~i~e~~l~~~L~~~~~~~pdPDLlIrtGg~~rLsgFlpWQiryTEi~~~~~~-p~f~~~df~~AL~~Y~~rerRfG 254 (289)
+ ++++.++++|+ +++||||||||||||.|||||||||++||||||++.+ |||++.||.+||.+||+|+||||
T Consensus 155 ~----i~e~~~~~~l~---~~~p~~DLlIRTsGE~RLSnFLlWQ~ayael~F~d~lWPdF~~~d~~~ai~~yq~R~RrfG 227 (239)
T PRK14839 155 G----LSREAFSDLLT---GDGGDVDLLIRTGGEKRLSDFLLWESAYAELHFTDRMWPDFGADDLAAAVADFHGRERRFG 227 (239)
T ss_pred c----CCHHHHHHHhc---cCCCCCCEEEeCCCccccccchhhhhhheEEEEccCCCccCCHHHHHHHHHHHhccccccC
Confidence 4 78999999986 5889999999999999999999999999999999996 99999999999999999999999
Q ss_pred Ccc
Q 022957 255 KSS 257 (289)
Q Consensus 255 k~~ 257 (289)
+++
T Consensus 228 ~~~ 230 (239)
T PRK14839 228 GLP 230 (239)
T ss_pred CCC
Confidence 974
No 19
>cd00475 CIS_IPPS Cis (Z)-Isoprenyl Diphosphate Synthases (cis-IPPS); homodimers which catalyze the successive 1'-4 condensation of the isopentenyl diphosphate (IPP) molecule to trans,trans-farnesyl diphosphate (FPP) or to cis,trans-FPP to form long-chain polyprenyl diphosphates. A few can also catalyze the condensation of IPP to trans-geranyl diphosphate to form the short-chain cis,trans- FPP. In prokaryotes, the cis-IPPS, undecaprenyl diphosphate synthase (UPP synthase) catalyzes the formation of the carrier lipid UPP in bacterial cell wall peptidooglycan biosynthesis. Similarly, in eukaryotes, the cis-IPPS, dehydrodolichyl diphosphate (dedol-PP) synthase catalyzes the formation of the polyisoprenoid glycosyl carrier lipid dolichyl monophosphate. cis-IPPS are mechanistically and structurally distinct from trans-IPPS, lacking the DDXXD motifs, yet requiring Mg2+ for activity.
Probab=100.00 E-value=4.2e-50 Score=360.54 Aligned_cols=175 Identities=21% Similarity=0.355 Sum_probs=153.1
Q ss_pred CCeEEEEEcCCCC--------------CChHHHHHHHHHHHhcCCCEEEEEeeC-CCCCcChHH---HHHHhhhc-----
Q 022957 67 LRYLAIVIESEEA--------------YHIPAVIQLLQWLVDIGVKHVCLYDAE-GILKKSKES---ILGKLNNA----- 123 (289)
Q Consensus 67 P~HlaVImdgn~~--------------~g~~~v~~i~~Wc~~~GI~~LTlYd~s-g~lKr~~~~---L~~~l~~~----- 123 (289)
|+|||||||||+| .|++++.+++.||.++||++||||+|| +||||+.++ ||+++...
T Consensus 1 P~HvaiImDGNrRwA~~~gl~~~~GH~~G~~~~~~i~~~~~~~gI~~lTvyaFS~eN~~R~~~EV~~Lm~l~~~~l~~~~ 80 (221)
T cd00475 1 PKHVAFIMDGNRRWAKQRGMDRIEGHKAGAEKLRDILRWCLELGVKEVTLYAFSTENWKRPKEEVDFLMELFRDVLRRIL 80 (221)
T ss_pred CCeEEEecCCCHHHHHHCCCChhHhHHHHHHHHHHHHHHHHHcCCCEEEEEeechhhhCcCHHHHHHHHHHHHHHHHHHH
Confidence 8999999999996 299999999999999999999999997 999999875 66555321
Q ss_pred -----C-----------CCCc-h-----hhhhhccCCCceEEEEEeCCCcHHHHHHHHHHHHHHHHHcCCCCcccccccc
Q 022957 124 -----T-----------LFEE-A-----GESNLLLDHKHITLEFASFPDGKEAVAKAANLLFMKYVKLGGSGKIQEEKIF 181 (289)
Q Consensus 124 -----~-----------~~~~-~-----~~~~~t~~~~~l~l~l~s~ydGR~eIv~a~r~l~~~~~~~~~~~~~di~~~i 181 (289)
+ .+|. + ..+..|+++++++||+|++||||+||++|++++++++ +.|..++++ +
T Consensus 81 ~~~~~~~i~vr~iGd~~~Lp~~~~~~~~~~e~~T~~~~~~~lni~~~Y~gr~eI~~a~~~~~~~~-~~~~~~~~~----i 155 (221)
T cd00475 81 KELEKLGVRIRIIGDLSLLPESLQKEIKKAEEATKNNTGFTLNVAFNYGGRQEIIHAVREIAEKV-KAGKLTPED----I 155 (221)
T ss_pred HHHHHCCcEEEEEeChhhCCHHHHHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHHH-HcCCCChHh----C
Confidence 1 1332 1 1345689999999999999999999999999998775 667777776 8
Q ss_pred cHHHHHHHHHhcCCCCCCCcEEEEeCCCcccCCCchhhhhhheEEecCCC-CCCCHHHHHHHHHHHhh
Q 022957 182 TEAHMSEALRAVGCKGPEPDLLLVYGPVRCHLGFPAWRIRYTEIVHMGRL-KSMRYGSLLKAIYKFTM 248 (289)
Q Consensus 182 ~e~~l~~~L~~~~~~~pdPDLlIrtGg~~rLsgFlpWQiryTEi~~~~~~-p~f~~~df~~AL~~Y~~ 248 (289)
+++.++++|+ ++++|||||+|||||+.|||||||||++||||||++++ |+|++.+|.+||.+|++
T Consensus 156 ~~~~~~~~L~--~~~~p~pDLlIRTsGe~RLSnFLlWQ~~yaEl~F~~~lWPdf~~~~~~~al~~y~~ 221 (221)
T cd00475 156 DESTLNKHLY--THDSPDPDLLIRTSGEQRLSNFLLWQSAYSELYFSDVLWPDFTFWDFLRALLDYQR 221 (221)
T ss_pred CHHHHHHhhC--cCCCCCCCEEEecCCccccccchHhhHhheeEEECCCCCCcCCHHHHHHHHHHHhC
Confidence 8999999998 46899999999999999999999999999999999996 99999999999999974
No 20
>PRK10240 undecaprenyl pyrophosphate synthase; Provisional
Probab=100.00 E-value=5.7e-49 Score=354.56 Aligned_cols=178 Identities=15% Similarity=0.209 Sum_probs=155.5
Q ss_pred EcCCCC--------------CChHHHHHHHHHHHhcCCCEEEEEeeC-CCCCcChHH---HHHHhhhc----------C-
Q 022957 74 IESEEA--------------YHIPAVIQLLQWLVDIGVKHVCLYDAE-GILKKSKES---ILGKLNNA----------T- 124 (289)
Q Consensus 74 mdgn~~--------------~g~~~v~~i~~Wc~~~GI~~LTlYd~s-g~lKr~~~~---L~~~l~~~----------~- 124 (289)
||||+| .|++++.+++.||.+.||++||+|+|| +||||+.++ ||+++.+. +
T Consensus 1 mDGNrRwAk~~g~~~~~GH~~G~~~l~~i~~~c~~~GI~~lT~yaFS~eN~~R~~~Ev~~Lm~l~~~~l~~~~~~~~~~~ 80 (229)
T PRK10240 1 MDGNGRWAKKQGKIRAFGHKAGAKSVRRAVSFAANNGIEALTLYAFSSENWNRPAQEVSALMELFVWALDSEVKSLHRHN 80 (229)
T ss_pred CCCcHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEeeehhhcCcCHHHHHHHHHHHHHHHHHHHHHHHHCC
Confidence 799985 299999999999999999999999997 999999875 66655421 1
Q ss_pred ----------CCCc-h-----hhhhhccCCCceEEEEEeCCCcHHHHHHHHHHHHHHHHHcCCCCcccccccccHHHHHH
Q 022957 125 ----------LFEE-A-----GESNLLLDHKHITLEFASFPDGKEAVAKAANLLFMKYVKLGGSGKIQEEKIFTEAHMSE 188 (289)
Q Consensus 125 ----------~~~~-~-----~~~~~t~~~~~l~l~l~s~ydGR~eIv~a~r~l~~~~~~~~~~~~~di~~~i~e~~l~~ 188 (289)
.+|. + ..+..|+++++++||+|++||||+||++|++++++++ +.|.+++++ ++++.+++
T Consensus 81 i~vr~iG~~~~Lp~~l~~~i~~~e~~T~~~~~~~Lnla~~Yggr~EI~~A~~~~~~~v-~~g~~~~~~----i~e~~i~~ 155 (229)
T PRK10240 81 VRLRIIGDTSRFNSRLQERIRKSEALTAGNTGLTLNIAANYGGRWDIVQGVRQLAEQV-QQGNLQPDQ----IDEEMLNQ 155 (229)
T ss_pred cEEEEEeChhhCCHHHHHHHHHHHHHhcCCCCeEEEEEeccCCHHHHHHHHHHHHHHH-HcCCCChhh----CCHHHHHH
Confidence 1332 1 1235689999999999999999999999999998875 677787776 78999999
Q ss_pred HHHhcCCCCCCCcEEEEeCCCcccCCCchhhhhhheEEecCCC-CCCCHHHHHHHHHHHhhhhhccCCcch
Q 022957 189 ALRAVGCKGPEPDLLLVYGPVRCHLGFPAWRIRYTEIVHMGRL-KSMRYGSLLKAIYKFTMVRQNYGKSSF 258 (289)
Q Consensus 189 ~L~~~~~~~pdPDLlIrtGg~~rLsgFlpWQiryTEi~~~~~~-p~f~~~df~~AL~~Y~~rerRfGk~~~ 258 (289)
+|+ ++++|||||+|||||+.|||||||||++||||||++.+ |+|++.||.+||.+|++|+||||++.+
T Consensus 156 ~L~--t~~~pdpDLlIRTsGe~RLSnFLlWQ~ayaElyF~~~lWPdf~~~df~~al~~y~~r~rrfG~~~~ 224 (229)
T PRK10240 156 HIC--MHELAPVDLVIRTGGEHRISNFLLWQIAYAELYFTDVLWPDFDEQDFEGALNAFANRERRFGGTEP 224 (229)
T ss_pred Hhc--cCCCCCCCEEEeCCCcccccCChHHHHhheEEEECCCCCCcCCHHHHHHHHHHHHccCccCCCCCC
Confidence 997 47899999999999999999999999999999999996 999999999999999999999999853
No 21
>PF01255 Prenyltransf: Putative undecaprenyl diphosphate synthase; InterPro: IPR001441 Synonym(s): Di-trans-poly-cis-undecaprenyl-diphosphate synthase, Undecaprenyl pyrophosphate synthetase, Undecaprenyl pyrophosphate synthase, UPP synthetase Di-trans-poly-cis-decaprenylcistransferase (2.5.1.31 from EC) (UPP synthetase) generates undecaprenyl pyrophosphate (UPP) from isopentenyl pyrophosphate (IPP) []. This bacterial enzyme is also found in archaebacteria and in a number of uncharacterised proteins including some from yeasts. This entry also matches related enzymes that transfer alkyl groups, such as dehydrodolichyl diphosphate synthase.; GO: 0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups; PDB: 2D2R_B 2DTN_B 1F75_B 1X07_A 2E9D_A 1JP3_A 3QAS_A 1X09_A 1V7U_B 2E9A_A ....
Probab=100.00 E-value=2.6e-48 Score=350.07 Aligned_cols=175 Identities=19% Similarity=0.342 Sum_probs=138.5
Q ss_pred EEcCCCC--------------CChHHHHHHHHHHHhcCCCEEEEEeeC-CCCCcChHH---HHHHhhhc-----------
Q 022957 73 VIESEEA--------------YHIPAVIQLLQWLVDIGVKHVCLYDAE-GILKKSKES---ILGKLNNA----------- 123 (289)
Q Consensus 73 Imdgn~~--------------~g~~~v~~i~~Wc~~~GI~~LTlYd~s-g~lKr~~~~---L~~~l~~~----------- 123 (289)
|||||+| .|++++.+++.||.++||++||+|+|| +||+|+.++ ||+++.+.
T Consensus 1 ImDGNrRwA~~~g~~~~~Gh~~G~~~l~~i~~~~~~~gI~~lTvYaFS~eN~~R~~~EV~~Lm~l~~~~l~~~~~~~~~~ 80 (223)
T PF01255_consen 1 IMDGNRRWAKKRGLPRSEGHRAGAEKLKEIVEWCLELGIKYLTVYAFSTENWKRPKEEVDALMDLFERYLRELIDELNFH 80 (223)
T ss_dssp EE--HHHHHHHTTSSHHHHHHHHHHHHHHHHHHHHHCT-SEEEEEEEETTGGGS-HHHHHHHHHHHHHHHHHHHHHHH--
T ss_pred CCcCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEEecchhhcCCHHHHHHHHHHHHHHHHHHhhhcchh
Confidence 8999986 299999999999999999999999997 999999875 56555321
Q ss_pred -CC-----------CCc-h-----hhhhhccCCCceEEEEEeCCCcHHHHHHHHHHHHHHHHHcCCCCcccccccccHHH
Q 022957 124 -TL-----------FEE-A-----GESNLLLDHKHITLEFASFPDGKEAVAKAANLLFMKYVKLGGSGKIQEEKIFTEAH 185 (289)
Q Consensus 124 -~~-----------~~~-~-----~~~~~t~~~~~l~l~l~s~ydGR~eIv~a~r~l~~~~~~~~~~~~~di~~~i~e~~ 185 (289)
++ +|. + ..++.|+++++++||+|++||||+||++|++++++++ +.|.+++++ ++++.
T Consensus 81 ~~~irvr~iGd~~~Lp~~~~~~i~~~e~~T~~n~~l~Lnia~~Yggr~eI~~a~~~~~~~~-~~~~~~~~~----i~~~~ 155 (223)
T PF01255_consen 81 KNGIRVRVIGDLSLLPEELQKAIAEAEEKTKNNTGLTLNIAINYGGRDEIVDAARKLAEEV-QSGKLSPED----IDEEL 155 (223)
T ss_dssp HTTEEEEEES-GGGS-HHHHHHHHHHHHHHTTSSSEEEEEEECE-HHHHHHHHHHHHHHHH-HTTSSGGGG-----SHHH
T ss_pred hcCeeEEEEeccCcCCHHHHHHHHHHHHhhccCcceeEEEEecCCcHHHHHHHHHHhhhhh-ccCcccccc----CCHHH
Confidence 11 222 1 1235688999999999999999999999999998885 677888887 88999
Q ss_pred HHHHHHhcCCCCCCCcEEEEeCCCcccCCCchhhhhhheEEecCCC-CCCCHHHHHHHHHHHhhhhhccCC
Q 022957 186 MSEALRAVGCKGPEPDLLLVYGPVRCHLGFPAWRIRYTEIVHMGRL-KSMRYGSLLKAIYKFTMVRQNYGK 255 (289)
Q Consensus 186 l~~~L~~~~~~~pdPDLlIrtGg~~rLsgFlpWQiryTEi~~~~~~-p~f~~~df~~AL~~Y~~rerRfGk 255 (289)
++++|++ +.+| |||+|||||+.|||||||||++||||||++++ |+|++.||.+||.+|++|+|||||
T Consensus 156 i~~~L~~--~~~P-pDLlIRtsGe~RLS~FllWq~~y~El~f~~~~WPdf~~~d~~~al~~y~~r~rrfGk 223 (223)
T PF01255_consen 156 ISSHLYT--PDLP-PDLLIRTSGEQRLSNFLLWQSAYAELYFTDTLWPDFSFWDFLRALLEYQRRERRFGK 223 (223)
T ss_dssp HHHTSTT--TTS---SEEEEETT--C-TTSSTTTTTT-EEEEESSSGGG--HHHHHHHHHHHHHCHHHTT-
T ss_pred HHhhccc--cCCC-CCEEEEeCCCcccCCCeEEeecCcEEEECCCCCccCCHHHHHHHHHHHHhhhccCCC
Confidence 9999995 5677 99999999999999999999999999999985 999999999999999999999998
No 22
>PTZ00349 dehydrodolichyl diphosphate synthetase; Provisional
Probab=100.00 E-value=2.1e-46 Score=349.53 Aligned_cols=182 Identities=13% Similarity=0.186 Sum_probs=149.0
Q ss_pred CCCCeEEEEEcCCCC--------------CChHHHHHHHHHHHhcCCCEEEEEeeC-CCCCcChHH---HHHHhhh----
Q 022957 65 DKLRYLAIVIESEEA--------------YHIPAVIQLLQWLVDIGVKHVCLYDAE-GILKKSKES---ILGKLNN---- 122 (289)
Q Consensus 65 ~~P~HlaVImdgn~~--------------~g~~~v~~i~~Wc~~~GI~~LTlYd~s-g~lKr~~~~---L~~~l~~---- 122 (289)
++|+|||||||||+| .|++++.+++.||.++||++||+|+|| +||||+.++ ||+++..
T Consensus 18 ~iP~HVAiIMDGNrRwAk~~gl~~~~GH~~G~~~l~~il~~c~~lGIk~lTlYAFStENwkRp~~EV~~Lm~L~~~~l~~ 97 (322)
T PTZ00349 18 INIKHISIIMDGNRRFAKEKGLHSAIGHFMGSKALIQIIEICIKLKIKILSVFSFSLLNYNRSPEEIHFLFYLNLLILIN 97 (322)
T ss_pred CCCCcEEEEcCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEEeehhhhCCCHHHHHHHHHHHHHHHHH
Confidence 789999999999996 299999999999999999999999997 999999875 5654421
Q ss_pred ---------cCC-----------CCc-h-----hhhhhccCCCceEEEEEeCCCcHHHHH----------HHHHHHHHHH
Q 022957 123 ---------ATL-----------FEE-A-----GESNLLLDHKHITLEFASFPDGKEAVA----------KAANLLFMKY 166 (289)
Q Consensus 123 ---------~~~-----------~~~-~-----~~~~~t~~~~~l~l~l~s~ydGR~eIv----------~a~r~l~~~~ 166 (289)
.++ +|. + ..++.|+++++++||+|.+||||+||+ +|+|++++++
T Consensus 98 ~~~~~~~l~~~~irirviGd~~~Lp~~l~~~i~~~e~~T~~n~~~~Lnia~~YggR~EI~~~v~~~~~~~~A~~~~~~~~ 177 (322)
T PTZ00349 98 EDFFFKFIKDNKIKIKIIGNLSYINDAYRKIIHDIEEKTENFDNILLNIFFSYTSRNEMSLCKFNPNLYFDTYKNLLEEK 177 (322)
T ss_pred hhhhHHHHHHCCCEEEEEeChhhCCHHHHHHHHHHHHHhCCCCCcEEEEEecCCCHHHHHHhhcccchHHHHHHHHHHHh
Confidence 111 232 1 134579999999999999999999999 7999998763
Q ss_pred ------------HHcCCCCcc-c---------------------------------c-cccccHHHHHHHHHhcCCCCCC
Q 022957 167 ------------VKLGGSGKI-Q---------------------------------E-EKIFTEAHMSEALRAVGCKGPE 199 (289)
Q Consensus 167 ------------~~~~~~~~~-d---------------------------------i-~~~i~e~~l~~~L~~~~~~~pd 199 (289)
.+.|.+++. + + ...++++.++++|+ ++++||
T Consensus 178 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~e~~i~~~~~~~~Ly--t~~~Pd 255 (322)
T PTZ00349 178 KILCGSNILTDPIKEGTFAIPDDEDECDYLDHELENERIDLDLKFDGDCICGEKSFLNEEQIEIVNYHKKLL--TSDLPP 255 (322)
T ss_pred ccccccccccccccccccccchhcccccccccccccccccccccccccccccccccCChhhccHHHHHHhcc--CCCCCC
Confidence 233433211 1 1 11245566999998 479999
Q ss_pred CcEEEEeCCCcccCCCchhhh-hhheEEecCCC-CCCCHHHHHHHHHHHhh
Q 022957 200 PDLLLVYGPVRCHLGFPAWRI-RYTEIVHMGRL-KSMRYGSLLKAIYKFTM 248 (289)
Q Consensus 200 PDLlIrtGg~~rLsgFlpWQi-ryTEi~~~~~~-p~f~~~df~~AL~~Y~~ 248 (289)
|||+||||||.||||||+||+ +||||||++.+ |+|+..+|.+||.+||.
T Consensus 256 pDLlIRTSGE~RLSNFLLWQ~aaysElyF~d~lWPdF~~~d~~~ai~~yq~ 306 (322)
T PTZ00349 256 PNILIRTSGEKRLSDFMLYQISEFTEIYFINEYWPIFNFLQFIYIILHYTI 306 (322)
T ss_pred CCEEEECCCcccccccHHhhcccceEEEECCCCCCCCCHHHHHHHHHHHhh
Confidence 999999999999999999999 69999999996 99999999999999976
No 23
>KOG1602 consensus Cis-prenyltransferase [Lipid transport and metabolism]
Probab=100.00 E-value=1.9e-42 Score=311.47 Aligned_cols=185 Identities=18% Similarity=0.236 Sum_probs=160.3
Q ss_pred CCCCCeEEEEEcCCCC--------------CChHHHHHHHHHHHhcCCCEEEEEeeC-CCCCcChHH---HHHHhhhc--
Q 022957 64 IDKLRYLAIVIESEEA--------------YHIPAVIQLLQWLVDIGVKHVCLYDAE-GILKKSKES---ILGKLNNA-- 123 (289)
Q Consensus 64 ~~~P~HlaVImdgn~~--------------~g~~~v~~i~~Wc~~~GI~~LTlYd~s-g~lKr~~~~---L~~~l~~~-- 123 (289)
-.+|+|||+|||||+| .|..++.++++||.++||++||+|+|+ +||||++++ ||+++.++
T Consensus 34 g~~P~HVaFIMDGNRR~AKk~~L~~~~GH~aGf~~l~~ile~C~~lGI~~vT~fAFSieNFkRs~eEVd~LM~L~~~k~~ 113 (271)
T KOG1602|consen 34 GPMPRHVAFIMDGNRRYAKKRGLETSEGHEAGFEALKEILELCKELGIKEVTVFAFSIENFKRSPEEVDGLMDLALEKIE 113 (271)
T ss_pred CCCcceeEEEecCchHHHHhcCCCcccchHHHHHHHHHHHHHHHHcCCcEEEEEEEehhhhCCCHHHHHHHHHHHHHHHH
Confidence 4789999999999996 289999999999999999999999998 999999875 67655432
Q ss_pred -----------CC-----------CCc-h-----hhhhhccCCCceEEEEEeCCCcHHHHHHHHHHHHHHHHHcCCCCcc
Q 022957 124 -----------TL-----------FEE-A-----GESNLLLDHKHITLEFASFPDGKEAVAKAANLLFMKYVKLGGSGKI 175 (289)
Q Consensus 124 -----------~~-----------~~~-~-----~~~~~t~~~~~l~l~l~s~ydGR~eIv~a~r~l~~~~~~~~~~~~~ 175 (289)
++ +|+ + ..++.|++|++.+|++|.+|.||.||++|+|.++..+ +.|..++
T Consensus 114 ~~~~~~~~~~~~gvririiGdlslL~~~l~k~i~~ieE~Tknn~~~~L~vcf~Ytsr~EI~~a~r~~~~~~-~~g~~~~- 191 (271)
T KOG1602|consen 114 RLLEQGEKLDKYGVRIRVIGDLSLLPESLRKAIKKIEEATKNNTRLILNVCFAYTSRDEILHAVRGIVKRV-KDGDIDV- 191 (271)
T ss_pred HHHHHhhhhhhcCeEEEEEcchhhCCHHHHHHHHHHHHHhhcCCceEEEEEeccCcHHHHHHHHHHHHHhh-hcCCCcc-
Confidence 11 222 1 1235799999999999999999999999999998764 5666655
Q ss_pred cccccccHHHHHHHHHhcCCCCCCCcEEEEeCCCcccCCCchhhhhhheEEecCCC-CCCCHHHHHHHHHHHhhhhhccC
Q 022957 176 QEEKIFTEAHMSEALRAVGCKGPEPDLLLVYGPVRCHLGFPAWRIRYTEIVHMGRL-KSMRYGSLLKAIYKFTMVRQNYG 254 (289)
Q Consensus 176 di~~~i~e~~l~~~L~~~~~~~pdPDLlIrtGg~~rLsgFlpWQiryTEi~~~~~~-p~f~~~df~~AL~~Y~~rerRfG 254 (289)
| +.+.+++++|++ ...|.|||+|||||+.|||||++||+++||++|.+.+ |+|++..|..||-+||..++++|
T Consensus 192 ~----i~~~~~e~~l~~--~~~p~pDLlIRTSGe~RLSnFllWQ~s~t~l~f~~~LWPefg~~~l~~aiLkfq~~~~~l~ 265 (271)
T KOG1602|consen 192 D----INLSDIEECLYT--SDVPHPDLLIRTSGEDRLSNFLLWQTSETELFFADALWPEFGLWHLFWAILKFQRNQSYLG 265 (271)
T ss_pred c----hhhHHHHHhhcc--CCCCCCCEEEEcCCcchHHHHHHHHhcccEEeeccccCccccHHHHHHHHHHHHHHHHHHh
Confidence 2 678889999985 6779999999999999999999999999999999996 99999999999999999999998
Q ss_pred Cc
Q 022957 255 KS 256 (289)
Q Consensus 255 k~ 256 (289)
+.
T Consensus 266 ~~ 267 (271)
T KOG1602|consen 266 KR 267 (271)
T ss_pred hh
Confidence 75
No 24
>KOG2818 consensus Predicted undecaprenyl diphosphate synthase [Lipid transport and metabolism]
Probab=99.98 E-value=2.5e-31 Score=240.19 Aligned_cols=235 Identities=21% Similarity=0.322 Sum_probs=175.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhh--------hHhh-hhcCCCCCCeEEEEEcCCCC--CC
Q 022957 13 WACQIGNLGLWIIWLLIHFAVDLWYFALHIACAIESYLISSGI--------LKRY-KALDIDKLRYLAIVIESEEA--YH 81 (289)
Q Consensus 13 ~~~~~~~~~~~ll~~liH~~~sl~~~~~~~~~~~~~~~is~~l--------~~k~-~~~~~~~P~HlaVImdgn~~--~g 81 (289)
+.+|.......++.......+.+|.+..-.++.. +..+.+.. ++.. +.+ .+.|+|+++|+..++. +.
T Consensus 4 r~~~~~~~~~~~~l~~~~~~~~a~~~~~~~~~~~-~~l~~s~~~~~a~~r~~r~d~~~L-~k~p~hl~lvI~~v~~~~~~ 81 (263)
T KOG2818|consen 4 RCCMLRSRASLLLLVKFQRCLGAFRRLWLFLIRT-KNLELSKAALHAAQRLFRTDFSSL-KKGPKHLALVIHPVEDGEGS 81 (263)
T ss_pred HHHHHHhhHHHHHHHHHHhhHhHHHHHHHHHHHh-hhHHHHHHHHHHHHHHhhcchhhh-hhcchhheEEEEecccCCce
Confidence 4455555555555555666666666665344433 23333322 1212 233 4789999988877776 37
Q ss_pred hHHHHHHHHHHHhcCCCEEEEEeeCCCCCcChHHHHHHhhhc----CCC--Cc-------hhhhhhccCCCceEEEEEeC
Q 022957 82 IPAVIQLLQWLVDIGVKHVCLYDAEGILKKSKESILGKLNNA----TLF--EE-------AGESNLLLDHKHITLEFASF 148 (289)
Q Consensus 82 ~~~v~~i~~Wc~~~GI~~LTlYd~sg~lKr~~~~L~~~l~~~----~~~--~~-------~~~~~~t~~~~~l~l~l~s~ 148 (289)
...+.+++.||...||+++++||..|.++|+.+.++..+... .+. +. .|.+....++.++.+...+.
T Consensus 82 ~~da~~~v~w~v~~gik~~~lyd~~g~~~r~~~~~~~~I~s~la~~~g~~~~~~~~~~~~snD~~nQ~~~~~L~~~~~s~ 161 (263)
T KOG2818|consen 82 FSDASSIVFWAVTVGIKYLSLYDRVGIKKRNMPVVRDEIISHLANYFGLDEPTLAVTIKLSNDEPNQEDKCKLGTHAISL 161 (263)
T ss_pred ehhhHHHHHHHHHhccceeeHHHHHHHhccCcHHHHHHHHHhhhhhcCCCCCcccccCCCCCCCcccccccchhheeccc
Confidence 889999999999999999999999999999998877666432 221 11 12222335667899999999
Q ss_pred CCcHHHHHHHHHHHHHHHHHcC-CCCcccccccccHHHHHHHHHhcCCCCCCCcEEEEeCCCcccCCCchhhhhhheEEe
Q 022957 149 PDGKEAVAKAANLLFMKYVKLG-GSGKIQEEKIFTEAHMSEALRAVGCKGPEPDLLLVYGPVRCHLGFPAWRIRYTEIVH 227 (289)
Q Consensus 149 ydGR~eIv~a~r~l~~~~~~~~-~~~~~di~~~i~e~~l~~~L~~~~~~~pdPDLlIrtGg~~rLsgFlpWQiryTEi~~ 227 (289)
.|||.-|+|.++.+...+.... ..++.+ +|-+.+++-|.. ...|||||+|+||+...++||||||+|+|||+.
T Consensus 162 ~DGr~~i~Dl~r~i~~~~~~~~~~~~~~~----itve~vds~l~e--~~~PePdLll~fg~~~~l~GfpPWhiRltEf~~ 235 (263)
T KOG2818|consen 162 EDGRMIIIDLTRLIQELCYLYELYRSETD----ITVETVDSELKE--FVEPEPDLLLFFGPVLVLQGFPPWHIRLTEFTR 235 (263)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHhCCCcc----ccHHHHHHHHHh--cCCCCcceeeeeccchhhcCCCCceeEEEEeEe
Confidence 9999999999999865542221 123333 677788887774 588999999999999999999999999999999
Q ss_pred cCCCCCCCHHHHHHHHHHHhhhhhccCC
Q 022957 228 MGRLKSMRYGSLLKAIYKFTMVRQNYGK 255 (289)
Q Consensus 228 ~~~~p~f~~~df~~AL~~Y~~rerRfGk 255 (289)
.|++-.++|++|.+||++|++|+||.||
T Consensus 236 ~p~~~~~~~e~f~~~lr~ya~ce~RvGk 263 (263)
T KOG2818|consen 236 KPSHLCTSYETFFRALRKYADCEQRVGK 263 (263)
T ss_pred ccccCcccHHHHHHHHHHHhhhhhhcCC
Confidence 9999999999999999999999999997
No 25
>PF13043 DUF3903: Domain of unknown function (DUF3903)
Probab=66.16 E-value=2.6 Score=27.59 Aligned_cols=15 Identities=33% Similarity=0.612 Sum_probs=10.9
Q ss_pred HHHHH-hhhhhccCCc
Q 022957 242 AIYKF-TMVRQNYGKS 256 (289)
Q Consensus 242 AL~~Y-~~rerRfGk~ 256 (289)
||++- +.|+|||||+
T Consensus 9 ai~kvr~eckrrfgkt 24 (40)
T PF13043_consen 9 AIQKVRAECKRRFGKT 24 (40)
T ss_pred HHHHHHHHHHHHhchh
Confidence 34443 4799999998
No 26
>PF07736 CM_1: Chorismate mutase type I; InterPro: IPR008243 Chorismate mutase (CM; 5.4.99.5 from EC) catalyses the reaction at the branch point of the biosynthetic pathway leading to the three aromatic amino acids, phenylalanine, tryptophan and tyrosine (chorismic acid is the last common intermediate, and CM leads to the L-phenylalanine/L-tyrosine branch). It is part of the shikimate pathway, which is present only in bacteria, fungi and plants. This entry represents a family of monofunctional (non-fused) chorismate mutases from Gram-positive bacteria (Firmicutes) and cyanobacteria. Trusted members of the family are found in operons with other enzymes of the chorismate pathways, both up- and downstream of CM (Listeria, Bacillus, Oceanobacillus) or are the sole CM in the genome where the other members of the chorismate pathways are found elsewhere in the genome (Nostoc, Thermosynechococcus). They are monofunctional, homotrimeric, nonallosteric enzymes and are not regulated by the end-product aromatic amino acids. The three types of CM are AroQ class, Prokaryotic type (e.g., IPR008239 from INTERPRO amongst others); AroQ class, Eukaryotic type (IPR008238 from INTERPRO); and AroH class. They fall into two structural folds (AroQ class and AroH class) which are completely unrelated []. The two types of the AroQ structural class (the Escherichia coli CM dimer and the yeast CM monomer) can be structurally superimposed, and the topology of the four-helix bundle forming the active site is conserved []. For additional information please see [, , , , , , ].; PDB: 2CHS_K 2CHT_L 1COM_J 1FNJ_A 1FNK_A 1DBF_C 1UI9_A 1ODE_A 1UFY_A 1XHO_C ....
Probab=62.17 E-value=13 Score=30.62 Aligned_cols=32 Identities=9% Similarity=0.013 Sum_probs=25.9
Q ss_pred EeCCCcHHHHHHHHHHHHHHHHHcCCCCcccc
Q 022957 146 ASFPDGKEAVAKAANLLFMKYVKLGGSGKIQE 177 (289)
Q Consensus 146 ~s~ydGR~eIv~a~r~l~~~~~~~~~~~~~di 177 (289)
....|.+++|.+|+++|.+++.+.++++++||
T Consensus 9 tv~~n~~e~I~~at~eLl~~i~~~N~l~~~dI 40 (118)
T PF07736_consen 9 TVEENTPEEILEATRELLEEILERNELSPEDI 40 (118)
T ss_dssp E-SSSSHHHHHHHHHHHHHHHHHHTT--GGGE
T ss_pred ecCCCCHHHHHHHHHHHHHHHHHHcCCCHHHE
Confidence 35679999999999999999988889988875
No 27
>PF00763 THF_DHG_CYH: Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain; InterPro: IPR020630 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF). Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the N-terminal catalytic domain of these enzymes. ; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 2C2X_B 2C2Y_A 1EDZ_A 1EE9_A 4A26_B 3NGL_C 3NGX_A 1B0A_A 1DIA_A 1A4I_B ....
Probab=50.14 E-value=17 Score=29.36 Aligned_cols=54 Identities=17% Similarity=0.189 Sum_probs=33.7
Q ss_pred CCCCeEEEEEcCCCCCChHHHHHHHHHHHhcCCCEEEEEeeCCCCCcChHHHHHHhh
Q 022957 65 DKLRYLAIVIESEEAYHIPAVIQLLQWLVDIGVKHVCLYDAEGILKKSKESILGKLN 121 (289)
Q Consensus 65 ~~P~HlaVImdgn~~~g~~~v~~i~~Wc~~~GI~~LTlYd~sg~lKr~~~~L~~~l~ 121 (289)
..+++||+|.-|++.....-+......|.++||.+-. |.+..+- ..+++.+.+.
T Consensus 27 ~~~P~Laii~vg~d~~S~~Y~~~k~k~~~~~Gi~~~~-~~l~~~~--~~~el~~~i~ 80 (117)
T PF00763_consen 27 GITPKLAIILVGDDPASISYVRSKQKAAEKLGIEFEL-IELPEDI--SEEELLELIE 80 (117)
T ss_dssp T---EEEEEEES--HHHHHHHHHHHHHHHHHT-EEEE-EEE-TTS--SHHHHHHHHH
T ss_pred CCCcEEEEEecCCChhHHHHHHHHHHHHHHcCCceEE-EECCCCc--CHHHHHHHHH
Confidence 5678999999999866677789999999999998754 4443332 2445555554
No 28
>smart00549 TAFH TAF homology. Domain in Drosophila nervy, CBFA2T1, human TAF105, human TAF130, and Drosophila TAF110. Also known as nervy homology region 1 (NHR1).
Probab=48.81 E-value=21 Score=28.07 Aligned_cols=45 Identities=20% Similarity=0.178 Sum_probs=29.5
Q ss_pred CCCcHHHHHHHHHHHHHHHHHcCCCCcccccccccHHHHHHHHHhcCCCCCCCcE
Q 022957 148 FPDGKEAVAKAANLLFMKYVKLGGSGKIQEEKIFTEAHMSEALRAVGCKGPEPDL 202 (289)
Q Consensus 148 ~ydGR~eIv~a~r~l~~~~~~~~~~~~~di~~~i~e~~l~~~L~~~~~~~pdPDL 202 (289)
..+++.|+.+.+|.|...+. .|+ ++.+++...|+.....-|-|.|
T Consensus 17 ~~~~qpe~~~~Vr~LV~~L~-~~~---------i~~EeF~~~Lq~~lns~~qP~l 61 (92)
T smart00549 17 NDISQPEVAERVRTLVLGLV-NGT---------ITAEEFTSRLQEALNSPLQPYL 61 (92)
T ss_pred cCCCcchHHHHHHHHHHHHH-hCC---------CCHHHHHHHHHHHHcCCCCchh
Confidence 34555999999999988763 444 4556677777653344466655
No 29
>TIGR01796 CM_mono_aroH monofunctional chorismate mutase, gram positive type, clade 1. This model represents a family of monofunctional (non-fused) chorismate mutases from gram positive bacteria (Firmicutes) and cyanobacteria. Trusted members of the family are found in operons with other enzymes of the chorismate pathways, both up- and downstream of CM (Listeria, Bacillus, Oceanobacillus) or are the sole CM in the genome where the other members of the chorismate pathways are found elsewhere in the genome (Nostoc, Thermosynechococcus).
Probab=48.81 E-value=20 Score=29.51 Aligned_cols=74 Identities=15% Similarity=0.065 Sum_probs=44.6
Q ss_pred eCCCcHHHHHHHHHHHHHHHHHcCCCCcccc-ccccc-HHHHH-----HHHHhcCCCCCCCcEEEEeCCCcccCCCchhh
Q 022957 147 SFPDGKEAVAKAANLLFMKYVKLGGSGKIQE-EKIFT-EAHMS-----EALRAVGCKGPEPDLLLVYGPVRCHLGFPAWR 219 (289)
Q Consensus 147 s~ydGR~eIv~a~r~l~~~~~~~~~~~~~di-~~~i~-e~~l~-----~~L~~~~~~~pdPDLlIrtGg~~rLsgFlpWQ 219 (289)
...+.+++|.+|++.|..++.+.++++++|+ +.-+| -.+++ ...+.. ++..+ .-+.+.-|....|=||==
T Consensus 10 v~~nt~e~I~~at~eLl~~ii~~N~l~~edivSv~FT~T~DL~a~FPA~aaR~~-~Gw~~--Vplmc~qEm~V~gsL~rc 86 (117)
T TIGR01796 10 VERNEAEEIGEAVAELLTELMERNELTPEDLISVIFTVTEDLHADFPAAAARGL-PGWTD--VPVMCAQEIPVEGSLPRC 86 (117)
T ss_pred cCCCCHHHHHHHHHHHHHHHHHHcCCCHHHEEEEEEEecCcccccChHHHHHhc-cCCCC--cceeccCcCCCCCCCCce
Confidence 4578999999999999999888888888774 21121 01111 122211 12222 223455566777777777
Q ss_pred hhhh
Q 022957 220 IRYT 223 (289)
Q Consensus 220 iryT 223 (289)
||.-
T Consensus 87 IRvl 90 (117)
T TIGR01796 87 IRVL 90 (117)
T ss_pred eEEE
Confidence 7754
No 30
>cd02185 AroH Chorismate mutase (AroH) is one of at least five chorismate-utilizing enzymes present in microorganisms that catalyze the rearrangement of chorismate to prephenic acid, the first committed step in the biosynthesis of aromatic amino acids. In prokaryotes, chorismate mutase may be fused to prephenate dehydratase, prephenate dehydrogenase, or 3-deoxy-D-arabino-heptulosonat-7-phosphate (DAHP) as part of a bifunctional enzyme. The AroH domain forms a homotrimer with three-fold symmetry.
Probab=48.26 E-value=21 Score=29.44 Aligned_cols=78 Identities=17% Similarity=0.035 Sum_probs=47.4
Q ss_pred eCCCcHHHHHHHHHHHHHHHHHcCCCCcccc-ccccc-HHHHH-----HHHHhcCCCCCCC-cEEEEeCCCcccCCCchh
Q 022957 147 SFPDGKEAVAKAANLLFMKYVKLGGSGKIQE-EKIFT-EAHMS-----EALRAVGCKGPEP-DLLLVYGPVRCHLGFPAW 218 (289)
Q Consensus 147 s~ydGR~eIv~a~r~l~~~~~~~~~~~~~di-~~~i~-e~~l~-----~~L~~~~~~~pdP-DLlIrtGg~~rLsgFlpW 218 (289)
...+.+++|.+|+++|..++.+.+++.++|+ +.-+| -.+++ ...+. ++.- +.-+.+.-|...-|=||=
T Consensus 10 v~~nt~e~I~~at~eLl~~i~~~N~l~~edivSv~FT~T~DL~a~FPA~aaR~----~~~~~~Vplmc~qE~~V~gsL~r 85 (117)
T cd02185 10 VEENTAEEILEATRELLEEIIERNNIKPEDIISVIFTVTPDLDAAFPAKAARE----LGGWKYVPLMCAQEMDVPGSLPR 85 (117)
T ss_pred cCCCCHHHHHHHHHHHHHHHHHHcCCCHHHEEEEEEEeCCcccccChHHHHHh----cCCCCCcceeecCcCCCCCCCCc
Confidence 4578999999999999999888888888774 21121 01111 22221 1111 344556667777777777
Q ss_pred hhhhheEEec
Q 022957 219 RIRYTEIVHM 228 (289)
Q Consensus 219 QiryTEi~~~ 228 (289)
=||.-=.+.+
T Consensus 86 cIRvli~v~t 95 (117)
T cd02185 86 CIRVLIHVNT 95 (117)
T ss_pred eeEEEEEEec
Confidence 7775433333
No 31
>COG4792 EscU Type III secretory pathway, component EscU [Intracellular trafficking and secretion]
Probab=47.44 E-value=2.7e+02 Score=26.87 Aligned_cols=36 Identities=14% Similarity=0.173 Sum_probs=26.5
Q ss_pred CCCCeEEEEEcCCCC----------CChHHHHHHHHHHHhcCCCEE
Q 022957 65 DKLRYLAIVIESEEA----------YHIPAVIQLLQWLVDIGVKHV 100 (289)
Q Consensus 65 ~~P~HlaVImdgn~~----------~g~~~v~~i~~Wc~~~GI~~L 100 (289)
+-|.|+||-+-=.+. +.-.++..++.-+.+.||+.|
T Consensus 262 ~nPThiaI~l~Y~~gETplPlVi~k~~daqA~~i~~iAe~~~ipVv 307 (349)
T COG4792 262 KNPTHIAICLRYKRGETPLPLVIEKGTDAQALQIVKIAEEEGIPVV 307 (349)
T ss_pred ecCceEEEEEeeccCCCCCCEEEEecCcHHHHHHHHHHHHhCCCee
Confidence 569999998853321 234567888888999999987
No 32
>PRK14179 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=38.53 E-value=1.5e+02 Score=28.05 Aligned_cols=53 Identities=11% Similarity=0.117 Sum_probs=39.2
Q ss_pred CCCeEEEEEcCCCCCChHHHHHHHHHHHhcCCCEEEEEeeCCCCCcChHHHHHHhh
Q 022957 66 KLRYLAIVIESEEAYHIPAVIQLLQWLVDIGVKHVCLYDAEGILKKSKESILGKLN 121 (289)
Q Consensus 66 ~P~HlaVImdgn~~~g~~~v~~i~~Wc~~~GI~~LTlYd~sg~lKr~~~~L~~~l~ 121 (289)
.+++||+|+-|++..+..-++.....|.+.||..- +|.+.++.. .+++.+.+.
T Consensus 31 ~~P~Laii~vg~d~as~~Yv~~k~k~~~~~Gi~~~-~~~l~~~~~--~~~l~~~I~ 83 (284)
T PRK14179 31 IVPGLVVILVGDNPASQVYVRNKERSALAAGFKSE-VVRLPETIS--QEELLDLIE 83 (284)
T ss_pred CCceEEEEEeCCChhHHHHHHHHHHHHHHcCCEEE-EEECCCCCC--HHHHHHHHH
Confidence 44599999999987666778888999999999875 667765532 345555554
No 33
>PLN02616 tetrahydrofolate dehydrogenase/cyclohydrolase, putative
Probab=35.74 E-value=1.3e+02 Score=29.52 Aligned_cols=55 Identities=9% Similarity=0.056 Sum_probs=40.2
Q ss_pred CCCCeEEEEEcCCCCCChHHHHHHHHHHHhcCCCEEEEEeeCCCCCcChHHHHHHhhh
Q 022957 65 DKLRYLAIVIESEEAYHIPAVIQLLQWLVDIGVKHVCLYDAEGILKKSKESILGKLNN 122 (289)
Q Consensus 65 ~~P~HlaVImdgn~~~g~~~v~~i~~Wc~~~GI~~LTlYd~sg~lKr~~~~L~~~l~~ 122 (289)
..+++||+|+-|++....--+......|.+.||.. ..|.+.++. ..+++.+.+.+
T Consensus 101 g~~P~LaiIlvG~dpaS~~Yv~~k~K~~e~~GI~~-~~~~lpe~~--te~ell~~I~~ 155 (364)
T PLN02616 101 GVVPGLAVILVGDRKDSATYVRNKKKACDSVGINS-FEVRLPEDS--TEQEVLKFISG 155 (364)
T ss_pred CCCCeEEEEEeCCChhHHHHHHHHHHHHHHcCCEE-EEEECCCCC--CHHHHHHHHHH
Confidence 34569999999998767777889999999999998 555555443 24456665543
No 34
>TIGR02803 ExbD_1 TonB system transport protein ExbD, group 1. Members of this family are Gram-negative bacterial inner membrane proteins, generally designated ExbD, related to the TolR family modeled by TIGRFAMs TIGR02801. Members always are encoded next to a protein designated ExbB (TIGR02797), related to the TolQ family modeled by TIGRFAMs TIGR02796. ExbD and ExbB together form a proton channel through which they can harness the proton-motive force to energize TonB, which in turn energizes TonB-dependent receptors in the outer membrane. TonB-dependent receptors with known specificity tend to import siderophores or vitamin B12. A TonB system and Tol-Pal system often will co-exist in a single bacterial genome.
Probab=34.31 E-value=1.2e+02 Score=24.38 Aligned_cols=23 Identities=13% Similarity=0.267 Sum_probs=17.6
Q ss_pred CChHHHHHHHHHHHhcCCCEEEE
Q 022957 80 YHIPAVIQLLQWLVDIGVKHVCL 102 (289)
Q Consensus 80 ~g~~~v~~i~~Wc~~~GI~~LTl 102 (289)
--++.+.+++.-|.++|++.+++
T Consensus 96 ~~~~~vv~v~d~~~~aG~~~v~l 118 (122)
T TIGR02803 96 VDYGDLMKVMNLLRQAGYLKIGL 118 (122)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEE
Confidence 35777888888888888887776
No 35
>PRK14168 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=33.51 E-value=1.6e+02 Score=28.03 Aligned_cols=54 Identities=13% Similarity=0.172 Sum_probs=40.0
Q ss_pred CCCeEEEEEcCCCCCChHHHHHHHHHHHhcCCCEEEEEeeCCCCCcChHHHHHHhhh
Q 022957 66 KLRYLAIVIESEEAYHIPAVIQLLQWLVDIGVKHVCLYDAEGILKKSKESILGKLNN 122 (289)
Q Consensus 66 ~P~HlaVImdgn~~~g~~~v~~i~~Wc~~~GI~~LTlYd~sg~lKr~~~~L~~~l~~ 122 (289)
..++|++|+-|++.....-+......|.+.||+. .+|.+.++. ..+++.+.+..
T Consensus 32 ~~P~LaiI~vg~d~as~~Yv~~k~k~~~~~Gi~~-~~~~l~~~~--t~~el~~~I~~ 85 (297)
T PRK14168 32 KVPGLVTILVGESPASLSYVTLKIKTAHRLGFHE-IQDNQSVDI--TEEELLALIDK 85 (297)
T ss_pred CCCeEEEEEeCCCHHHHHHHHHHHHHHHHcCCEE-EEEECCCCC--CHHHHHHHHHH
Confidence 3459999999998666677888899999999995 577776554 34556665543
No 36
>PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=33.31 E-value=1.6e+02 Score=27.99 Aligned_cols=54 Identities=13% Similarity=0.019 Sum_probs=39.2
Q ss_pred CCCCeEEEEEcCCCCCChHHHHHHHHHHHhcCCCEEEEEeeCCCCCcChHHHHHHhh
Q 022957 65 DKLRYLAIVIESEEAYHIPAVIQLLQWLVDIGVKHVCLYDAEGILKKSKESILGKLN 121 (289)
Q Consensus 65 ~~P~HlaVImdgn~~~g~~~v~~i~~Wc~~~GI~~LTlYd~sg~lKr~~~~L~~~l~ 121 (289)
..+++||+|+-|++.....-+......|.+.||.. .+|.+.++.. .+++.+.+.
T Consensus 30 g~~p~La~i~vg~~~~s~~Yv~~k~k~a~~~Gi~~-~~~~l~~~~~--~~el~~~i~ 83 (296)
T PRK14188 30 GVTPGLAVVLVGEDPASQVYVRSKGKQTKEAGMAS-FEHKLPADTS--QAELLALIA 83 (296)
T ss_pred CCCCeEEEEEeCCChhHHHHHHHHHHHHHHcCCEE-EEEECCCCCC--HHHHHHHHH
Confidence 34569999999998766667888999999999985 3666665532 345555554
No 37
>TIGR02804 ExbD_2 TonB system transport protein ExbD, group 2. Members of this family are Gram-negative bacterial inner membrane proteins, generally designated ExbD, related to the TolR family modeled by TIGRFAMs TIGR02801. Members always are encoded next to a protein designated ExbB (TIGR02797), related to the TolQ family modeled by TIGRFAMs TIGR02796. ExbD and ExbB together form a proton channel through which they can harness the proton-motive force to energize TonB, which in turn energizes TonB-dependent receptors in the outer membrane. TonB-dependent receptors with known specificity tend to import siderophores or vitamin B12. A TonB system and Tol-Pal system often will co-exist in a single bacterial genome.
Probab=32.78 E-value=89 Score=25.11 Aligned_cols=22 Identities=9% Similarity=0.138 Sum_probs=17.2
Q ss_pred ChHHHHHHHHHHHhcCCCEEEE
Q 022957 81 HIPAVIQLLQWLVDIGVKHVCL 102 (289)
Q Consensus 81 g~~~v~~i~~Wc~~~GI~~LTl 102 (289)
-++.+.+++..|..+|+..+++
T Consensus 96 ~~~~vv~v~d~~~~~G~~~v~l 117 (121)
T TIGR02804 96 KFQDFVTITDMLKAKEHENVQI 117 (121)
T ss_pred CHhHHHHHHHHHHHcCCCeEEE
Confidence 5777888888888888887776
No 38
>PHA02679 ORF091 IMV membrane protein; Provisional
Probab=32.44 E-value=36 Score=24.07 Aligned_cols=16 Identities=25% Similarity=0.663 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHH
Q 022957 20 LGLWIIWLLIHFAVDL 35 (289)
Q Consensus 20 ~~~~ll~~liH~~~sl 35 (289)
+--.+.|.+.|++.|+
T Consensus 37 qsi~FmWFifHFvhSv 52 (53)
T PHA02679 37 QSVVFSWFLFHFVHSV 52 (53)
T ss_pred HHHHHHHHHHHHHHhc
Confidence 3456889999988875
No 39
>PHA03047 IMV membrane receptor-like protein; Provisional
Probab=31.49 E-value=37 Score=24.00 Aligned_cols=16 Identities=19% Similarity=0.787 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHH
Q 022957 20 LGLWIIWLLIHFAVDL 35 (289)
Q Consensus 20 ~~~~ll~~liH~~~sl 35 (289)
+.-.+.|.+.|++.|+
T Consensus 37 qsi~FmWFifHFvhSv 52 (53)
T PHA03047 37 QSILFMWFIFHFVHSV 52 (53)
T ss_pred HHHHHHHHHHHHHHhc
Confidence 3456889999988875
No 40
>PRK14184 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=31.16 E-value=1.7e+02 Score=27.60 Aligned_cols=53 Identities=13% Similarity=0.093 Sum_probs=39.1
Q ss_pred CCCeEEEEEcCCCCCChHHHHHHHHHHHhcCCCEEEEEeeCCCCCcChHHHHHHhh
Q 022957 66 KLRYLAIVIESEEAYHIPAVIQLLQWLVDIGVKHVCLYDAEGILKKSKESILGKLN 121 (289)
Q Consensus 66 ~P~HlaVImdgn~~~g~~~v~~i~~Wc~~~GI~~LTlYd~sg~lKr~~~~L~~~l~ 121 (289)
.+++||+|.-|++..+..-+......|.+.||..- ++.+.++. ..+++.+.+.
T Consensus 30 ~~P~Laii~vg~d~as~~Yv~~k~k~~~~~Gi~~~-~~~l~~~~--~~~~l~~~I~ 82 (286)
T PRK14184 30 RAPGLAVILVGEDPASQVYVRNKERACEDAGIVSE-AFRLPADT--TQEELEDLIA 82 (286)
T ss_pred CCCEEEEEEeCCChhHHHHHHHHHHHHHHcCCEEE-EEECCCCC--CHHHHHHHHH
Confidence 45599999999987677778899999999999875 56665543 2344555544
No 41
>PRK14171 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=29.87 E-value=2.4e+02 Score=26.70 Aligned_cols=54 Identities=20% Similarity=0.277 Sum_probs=39.4
Q ss_pred CCCeEEEEEcCCCCCChHHHHHHHHHHHhcCCCEEEEEeeCCCCCcChHHHHHHhhh
Q 022957 66 KLRYLAIVIESEEAYHIPAVIQLLQWLVDIGVKHVCLYDAEGILKKSKESILGKLNN 122 (289)
Q Consensus 66 ~P~HlaVImdgn~~~g~~~v~~i~~Wc~~~GI~~LTlYd~sg~lKr~~~~L~~~l~~ 122 (289)
..++||+|+-|++..+..-+......|.+.||.. .++.+.++.. .+++.+.+.+
T Consensus 31 ~~P~LaiI~vg~d~as~~Yv~~k~k~a~~~Gi~~-~~~~l~~~~~--~~~l~~~I~~ 84 (288)
T PRK14171 31 ASPKLAIVLVGDNPASIIYVKNKIKNAHKIGIDT-LLVNLSTTIH--TNDLISKINE 84 (288)
T ss_pred CCCeEEEEEeCCCccHHHHHHHHHHHHHHcCCEE-EEEECCCCCC--HHHHHHHHHH
Confidence 3448999999998766677888899999999965 4777766543 4455555543
No 42
>PRK09482 flap endonuclease-like protein; Provisional
Probab=28.64 E-value=2e+02 Score=26.68 Aligned_cols=20 Identities=10% Similarity=0.140 Sum_probs=14.7
Q ss_pred CCCCHHHHHHHHHHHhhhhh
Q 022957 232 KSMRYGSLLKAIYKFTMVRQ 251 (289)
Q Consensus 232 p~f~~~df~~AL~~Y~~rer 251 (289)
|.++...=.+-|.+|...+.
T Consensus 188 pGIG~KtA~~LL~~~gsle~ 207 (256)
T PRK09482 188 AGIGPKSAAELLNQFRSLEN 207 (256)
T ss_pred CCcChHHHHHHHHHhCCHHH
Confidence 78888877777877766553
No 43
>PF06269 DUF1029: Protein of unknown function (DUF1029); InterPro: IPR009372 This entry is represented by Vaccinia virus, A14.5L; it is a family of uncharacterised viral proteins.
Probab=28.03 E-value=41 Score=23.79 Aligned_cols=16 Identities=19% Similarity=0.748 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHH
Q 022957 20 LGLWIIWLLIHFAVDL 35 (289)
Q Consensus 20 ~~~~ll~~liH~~~sl 35 (289)
+.-.+.|.+.|++.|+
T Consensus 37 qsi~FmWFifHFvhSv 52 (53)
T PF06269_consen 37 QSIVFMWFIFHFVHSV 52 (53)
T ss_pred HHHHHHHHHHHHHhcc
Confidence 4456889999998875
No 44
>cd05014 SIS_Kpsf KpsF-like protein. KpsF is an arabinose-5-phosphate isomerase which contains SIS (Sugar ISomerase) domains. SIS domains are found in many phosphosugar isomerases and phosphosugar binding proteins. KpsF catalyzes the reversible reaction of ribulose 5-phosphate to arabinose 5-phosphate. This is the second step in the CMP-Kdo biosynthesis pathway.
Probab=27.97 E-value=1.3e+02 Score=23.63 Aligned_cols=39 Identities=15% Similarity=0.200 Sum_probs=31.8
Q ss_pred CCCeEEEEEcCCCCCChHHHHHHHHHHHhcCCCEEEEEeeC
Q 022957 66 KLRYLAIVIESEEAYHIPAVIQLLQWLVDIGVKHVCLYDAE 106 (289)
Q Consensus 66 ~P~HlaVImdgn~~~g~~~v~~i~~Wc~~~GI~~LTlYd~s 106 (289)
.+..+.|++...+ ...++.+.+++|.+.|++.+++=+..
T Consensus 46 ~~~d~vi~iS~sG--~t~~~~~~~~~a~~~g~~vi~iT~~~ 84 (128)
T cd05014 46 TPGDVVIAISNSG--ETDELLNLLPHLKRRGAPIIAITGNP 84 (128)
T ss_pred CCCCEEEEEeCCC--CCHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 3668888887665 46889999999999999998887654
No 45
>PHA02724 hydrophobic IMV membrane protein; Provisional
Probab=26.88 E-value=54 Score=23.18 Aligned_cols=16 Identities=25% Similarity=0.686 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHH
Q 022957 20 LGLWIIWLLIHFAVDL 35 (289)
Q Consensus 20 ~~~~ll~~liH~~~sl 35 (289)
+.-.+.|.+.|++.|+
T Consensus 37 qsi~FmWFifHFvhSv 52 (53)
T PHA02724 37 QTIVFIWFIFHFVHSA 52 (53)
T ss_pred HHHHHHHHHHHHHhcc
Confidence 3456888999988875
No 46
>PRK04239 hypothetical protein; Provisional
Probab=26.59 E-value=1.7e+02 Score=23.88 Aligned_cols=45 Identities=13% Similarity=0.128 Sum_probs=32.8
Q ss_pred cHHHHHHHHHHHHHHHHHcCCCCcccccccccHHHHHHHHHhcCCCCCCC
Q 022957 151 GKEAVAKAANLLFMKYVKLGGSGKIQEEKIFTEAHMSEALRAVGCKGPEP 200 (289)
Q Consensus 151 GR~eIv~a~r~l~~~~~~~~~~~~~di~~~i~e~~l~~~L~~~~~~~pdP 200 (289)
-|+|.++++-...-.+++.|.+.. .++|+.+-+.|..+.....||
T Consensus 61 vkPe~A~~VE~~liqlAq~G~i~~-----ki~e~~L~~lL~~v~~~kre~ 105 (110)
T PRK04239 61 VKPEFAEQVEQQLIQLAQSGRIQG-----PIDDEQLKEILEQLTPQKREF 105 (110)
T ss_pred cCHHHHHHHHHHHHHHHHcCCCCC-----CcCHHHHHHHHHHHhhcccCc
Confidence 378888888887777788998753 389999999888644333333
No 47
>PRK14178 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=26.33 E-value=1.9e+02 Score=27.27 Aligned_cols=54 Identities=17% Similarity=0.138 Sum_probs=38.8
Q ss_pred CCCCeEEEEEcCCCCCChHHHHHHHHHHHhcCCCEEEEEeeCCCCCcChHHHHHHhh
Q 022957 65 DKLRYLAIVIESEEAYHIPAVIQLLQWLVDIGVKHVCLYDAEGILKKSKESILGKLN 121 (289)
Q Consensus 65 ~~P~HlaVImdgn~~~g~~~v~~i~~Wc~~~GI~~LTlYd~sg~lKr~~~~L~~~l~ 121 (289)
..+++||+|+-|++..+..-++.-...|.+.||..- +|.+.++. ..+++.+.+.
T Consensus 24 g~~P~Laii~vg~d~as~~Yv~~k~k~~~~~Gi~~~-~~~l~~~~--~~~el~~~I~ 77 (279)
T PRK14178 24 GLYPRLATVIVGDDPASQMYVRMKHRACERVGIGSV-GIELPGDA--TTRTVLERIR 77 (279)
T ss_pred CCCCeEEEEEeCCChhHHHHHHHHHHHHHHcCCEEE-EEECCCCC--CHHHHHHHHH
Confidence 445699999999987667778888999999999864 45555443 2445555443
No 48
>cd00954 NAL N-Acetylneuraminic acid aldolase, also called N-acetylneuraminate lyase (NAL), which catalyses the reversible aldol reaction of N-acetyl-D-mannosamine and pyruvate to give N-acetyl-D-neuraminic acid (D-sialic acid). It has a widespread application as biocatalyst for the synthesis of sialic acid and its derivatives. This enzyme has been shown to be quite specific for pyruvate as the donor, but flexible to a variety of D- and, to some extent, L-hexoses and pentoses as acceptor substrates. NAL is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases.
Probab=26.18 E-value=5.2e+02 Score=23.79 Aligned_cols=118 Identities=12% Similarity=0.051 Sum_probs=64.4
Q ss_pred cCCCCCChHHHHHHHHHHHhc-CCCEEEEEeeCCCCC-cChHH---HHHHhhhcCCCCchhhhhhccCCCceEEEEEeCC
Q 022957 75 ESEEAYHIPAVIQLLQWLVDI-GVKHVCLYDAEGILK-KSKES---ILGKLNNATLFEEAGESNLLLDHKHITLEFASFP 149 (289)
Q Consensus 75 dgn~~~g~~~v~~i~~Wc~~~-GI~~LTlYd~sg~lK-r~~~~---L~~~l~~~~~~~~~~~~~~t~~~~~l~l~l~s~y 149 (289)
|.++....+.+++++.|+.+. |+.-+.+-..+|..- -+.++ +.+...+. . .+++.|..-.+.
T Consensus 13 ~~dg~iD~~~~~~~i~~l~~~~Gv~gi~~~GstGE~~~Lt~~Er~~~~~~~~~~------------~-~~~~~viagv~~ 79 (288)
T cd00954 13 DENGEINEDVLRAIVDYLIEKQGVDGLYVNGSTGEGFLLSVEERKQIAEIVAEA------------A-KGKVTLIAHVGS 79 (288)
T ss_pred CCCCCCCHHHHHHHHHHHHhcCCCCEEEECcCCcCcccCCHHHHHHHHHHHHHH------------h-CCCCeEEeccCC
Confidence 334445889999999999999 999999998886543 22332 32222111 1 123444444444
Q ss_pred CcHHHHHHHHHHHHHHHHHcCC--CCcccccccccHHHHHHHHHhcCCCCCCCcEEEEeCC
Q 022957 150 DGKEAVAKAANLLFMKYVKLGG--SGKIQEEKIFTEAHMSEALRAVGCKGPEPDLLLVYGP 208 (289)
Q Consensus 150 dGR~eIv~a~r~l~~~~~~~~~--~~~~di~~~i~e~~l~~~L~~~~~~~pdPDLlIrtGg 208 (289)
.+-++.++.++.. ++.-..+- ++|- -...+++++-++...+....|+..++|.--|
T Consensus 80 ~~~~~ai~~a~~a-~~~Gad~v~~~~P~--y~~~~~~~i~~~~~~v~~a~~~lpi~iYn~P 137 (288)
T cd00954 80 LNLKESQELAKHA-EELGYDAISAITPF--YYKFSFEEIKDYYREIIAAAASLPMIIYHIP 137 (288)
T ss_pred CCHHHHHHHHHHH-HHcCCCEEEEeCCC--CCCCCHHHHHHHHHHHHHhcCCCCEEEEeCc
Confidence 5566666666663 33211111 1121 1124566677666654334445667776444
No 49
>COG2949 SanA Uncharacterized membrane protein [Function unknown]
Probab=26.00 E-value=5.2e+02 Score=23.71 Aligned_cols=54 Identities=19% Similarity=0.244 Sum_probs=26.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHhhhhcCCCCC-CeEEEEEc
Q 022957 13 WACQIGNLGLWIIWLLIHFAVDLWYFALHIACAIESYLISSGILKRYKALDIDKL-RYLAIVIE 75 (289)
Q Consensus 13 ~~~~~~~~~~~ll~~liH~~~sl~~~~~~~~~~~~~~~is~~l~~k~~~~~~~~P-~HlaVImd 75 (289)
...+.+.++..++|.++-++..+...=+-+-+.. .+ ..|.+.. .+| +++|+|+.
T Consensus 10 ~~~~~rrl~~~ll~lv~~~~a~~l~~dr~i~~~t------~~--~i~~~~~-~lP~r~vgvVLG 64 (235)
T COG2949 10 RSCMFRRLFRILLVLVGALLATVLIADRWISWAT------AG--LIYDDIQ-DLPARQVGVVLG 64 (235)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh------cc--ccccChh-hCCccceEEEEe
Confidence 3455566666666666555555533322111111 11 1222232 444 69999997
No 50
>PLN02897 tetrahydrofolate dehydrogenase/cyclohydrolase, putative
Probab=25.40 E-value=2.2e+02 Score=27.76 Aligned_cols=55 Identities=20% Similarity=0.218 Sum_probs=40.9
Q ss_pred CCCCeEEEEEcCCCCCChHHHHHHHHHHHhcCCCEEEEEeeCCCCCcChHHHHHHhhh
Q 022957 65 DKLRYLAIVIESEEAYHIPAVIQLLQWLVDIGVKHVCLYDAEGILKKSKESILGKLNN 122 (289)
Q Consensus 65 ~~P~HlaVImdgn~~~g~~~v~~i~~Wc~~~GI~~LTlYd~sg~lKr~~~~L~~~l~~ 122 (289)
..+++||+|+-|++....--++.-...|.+.||..- +|.+.++. ..+++.+.+.+
T Consensus 84 g~~P~LaiIlvGddpaS~~Yv~~k~K~a~~~GI~~~-~~~l~~~~--te~ell~~I~~ 138 (345)
T PLN02897 84 GKVPGLAVVLVGQQRDSQTYVRNKIKACEETGIKSL-LAELPEDC--TEGQILSALRK 138 (345)
T ss_pred CCCCeEEEEEeCCChHHHHHHHHHHHHHHhcCCEEE-EEECCCCC--CHHHHHHHHHH
Confidence 345599999999987667778899999999999875 66776553 34556665543
No 51
>PLN03044 GTP cyclohydrolase I; Provisional
Probab=25.39 E-value=80 Score=28.03 Aligned_cols=28 Identities=0% Similarity=-0.021 Sum_probs=22.7
Q ss_pred CeEEEEEcCCCCCChHHHHHHHHHHHhc
Q 022957 68 RYLAIVIESEEAYHIPAVIQLLQWLVDI 95 (289)
Q Consensus 68 ~HlaVImdgn~~~g~~~v~~i~~Wc~~~ 95 (289)
-|||.|++++.-.|..++.+++.|++..
T Consensus 87 ~hIaYiP~~~~ViGLSKl~RiV~~~arR 114 (188)
T PLN03044 87 IHVGYIPNAGVILGLSKLARIAEVYARR 114 (188)
T ss_pred EEEEEECCCCccccHHHHHHHHHHHhcC
Confidence 4999999734446999999999998754
No 52
>PRK14183 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=24.99 E-value=2.3e+02 Score=26.68 Aligned_cols=53 Identities=13% Similarity=0.145 Sum_probs=38.7
Q ss_pred CCCeEEEEEcCCCCCChHHHHHHHHHHHhcCCCEEEEEeeCCCCCcChHHHHHHhh
Q 022957 66 KLRYLAIVIESEEAYHIPAVIQLLQWLVDIGVKHVCLYDAEGILKKSKESILGKLN 121 (289)
Q Consensus 66 ~P~HlaVImdgn~~~g~~~v~~i~~Wc~~~GI~~LTlYd~sg~lKr~~~~L~~~l~ 121 (289)
.+++||+|.-|++..+..-++.....|.++||.. .+|.+.++. +.+++.+.+.
T Consensus 30 ~~P~Laii~vgdd~as~~Yv~~k~k~a~~~Gi~~-~~~~l~~~~--~~~~l~~~I~ 82 (281)
T PRK14183 30 IVPGLAVILVGDDPASHTYVKMKAKACDRVGIYS-ITHEMPSTI--SQKEILETIA 82 (281)
T ss_pred CCCeEEEEEeCCCHHHHHHHHHHHHHHHHcCCEE-EEEECCCCC--CHHHHHHHHH
Confidence 4569999999988656677888999999999987 455665543 2444555544
No 53
>PF13302 Acetyltransf_3: Acetyltransferase (GNAT) domain; PDB: 3TTH_C 3JUW_A 2ZXV_A 2Z0Z_A 2VI7_B 3EG7_F 1YRE_C 3IGR_B 3FBU_A 2FCK_A ....
Probab=24.82 E-value=1.6e+02 Score=22.82 Aligned_cols=41 Identities=15% Similarity=0.158 Sum_probs=30.2
Q ss_pred eEEEEEcCCCCC---ChHHHHHHHHHH-HhcCCCEEEEEeeCCCC
Q 022957 69 YLAIVIESEEAY---HIPAVIQLLQWL-VDIGVKHVCLYDAEGIL 109 (289)
Q Consensus 69 HlaVImdgn~~~---g~~~v~~i~~Wc-~~~GI~~LTlYd~sg~l 109 (289)
++++.++..-++ |.+.+..++.|| ...|+..+..+-..+|.
T Consensus 86 eig~~i~~~~~g~G~~~~~~~~~~~~~~~~~~~~~i~a~~~~~N~ 130 (142)
T PF13302_consen 86 EIGYWIGPDYRGKGYGTEALKLLLDWAFEELGLHRIIATVMADNE 130 (142)
T ss_dssp EEEEEEEGGGTTSSHHHHHHHHHHHHHHHTSTSSEEEEEEETT-H
T ss_pred ccccchhHHHHhhhHHHHHHHHHHHHHHhcCCcEEEEEEECcCCH
Confidence 566655544221 668899999999 68999999999888764
No 54
>PRK14167 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=24.35 E-value=2.4e+02 Score=26.83 Aligned_cols=53 Identities=13% Similarity=0.099 Sum_probs=39.3
Q ss_pred CCCeEEEEEcCCCCCChHHHHHHHHHHHhcCCCEEEEEeeCCCCCcChHHHHHHhh
Q 022957 66 KLRYLAIVIESEEAYHIPAVIQLLQWLVDIGVKHVCLYDAEGILKKSKESILGKLN 121 (289)
Q Consensus 66 ~P~HlaVImdgn~~~g~~~v~~i~~Wc~~~GI~~LTlYd~sg~lKr~~~~L~~~l~ 121 (289)
.+++||+|+-|++..+..-++.....|.+.||..- +|.+.++.. .+++.+.+.
T Consensus 30 ~~P~LaiI~vg~d~as~~Yv~~k~k~~~~~Gi~~~-~~~l~~~~~--~~el~~~I~ 82 (297)
T PRK14167 30 VTPGLATVLMSDDPASETYVSMKQRDCEEVGIEAI-DVEIDPDAP--AEELYDTID 82 (297)
T ss_pred CCceEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEE-EEECCCCCC--HHHHHHHHH
Confidence 44599999999987667778899999999999875 667765543 345555554
No 55
>PF02739 5_3_exonuc_N: 5'-3' exonuclease, N-terminal resolvase-like domain; InterPro: IPR020046 The N-terminal and internal 5'3'-exonuclease domains are commonly found together, and are most often associated with 5' to 3' nuclease activities. The XPG protein signatures (PDOC00658 from PROSITEDOC) are never found outside the '53EXO' domains. The latter are found in more diverse proteins [, , ]. The number of amino acids that separate the two 53EXO domains, and the presence of accompanying motifs allow the diagnosis of several protein families. In the eubacterial type A DNA-polymerases, the N-terminal and internal domains are separated by a few amino acids, usually four. The pattern DNA_POLYMERASE_A (IPR001098 from INTERPRO) is always present towards the C terminus. Several eukaryotic structure-dependent endonucleases and exonucleases have the 53EXO domains separated by 24 to 27 amino acids, and the XPG protein signatures are always present. In several proteins from herpesviridae, the two 53EXO domains are separated by 50 to 120 amino acids. These proteins are implicated in the inhibition of the expression of the host genes. Eukaryotic DNA repair proteins with 600 to 700 amino acids between the 53_EXO domains all carry the XPG protein signatures. This entry represents the N-terminal resolvase-like domain, which has a 3-layer alpha/beta/alpha core structure and contains an alpha-helical arch [, ].; GO: 0003677 DNA binding, 0008409 5'-3' exonuclease activity; PDB: 1TAQ_A 1BGX_T 1TAU_A 1XO1_B 1EXN_A 1UT8_A 1UT5_B 3H7I_A 3H8J_A 3H8S_A ....
Probab=23.71 E-value=2.1e+02 Score=24.58 Aligned_cols=37 Identities=19% Similarity=0.347 Sum_probs=28.0
Q ss_pred CCCeEEEEEcCCCC-------------------CChHHHHHHHHHHHhcCCCEEEE
Q 022957 66 KLRYLAIVIESEEA-------------------YHIPAVIQLLQWLVDIGVKHVCL 102 (289)
Q Consensus 66 ~P~HlaVImdgn~~-------------------~g~~~v~~i~~Wc~~~GI~~LTl 102 (289)
.|.|++++.|+.+. .....+..+-+++..+||+.+..
T Consensus 50 ~p~~~vv~fD~~~~~fR~~l~p~YKanR~~~p~~l~~q~~~i~~~l~~~gi~~~~~ 105 (169)
T PF02739_consen 50 KPDYVVVAFDSKGPTFRKELYPEYKANRKPMPEELIPQLPYIKELLEALGIPVLEV 105 (169)
T ss_dssp TEEEEEEEEEBSSCHHHHHCCTTTTHHHHHHHHHHHHHHHHHHHHHHHTTSEEEEE
T ss_pred CCceEEEEecCCCcchHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHCCCCEecC
Confidence 48999999998763 13445667778888999987764
No 56
>KOG3415 consensus Putative Rab5-interacting protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=23.38 E-value=3.9e+02 Score=22.04 Aligned_cols=35 Identities=29% Similarity=0.331 Sum_probs=28.4
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022957 5 DTMQKVYSWACQIGNLGLWIIWLLIHFAVDLWYFA 39 (289)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~ll~~liH~~~sl~~~~ 39 (289)
|..--+..|+.|+..++++++|-++-+.=.+++.+
T Consensus 39 dellDViyW~rQVi~l~lGviwGi~pL~G~l~iv~ 73 (129)
T KOG3415|consen 39 DELLDVIYWIRQVIGLILGVIWGIIPLVGFLGIVL 73 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhchhhhHHHHHH
Confidence 45555889999999999999999988776666555
No 57
>PRK11024 colicin uptake protein TolR; Provisional
Probab=23.33 E-value=1.6e+02 Score=24.28 Aligned_cols=22 Identities=36% Similarity=0.440 Sum_probs=17.7
Q ss_pred ChHHHHHHHHHHHhcCCCEEEE
Q 022957 81 HIPAVIQLLQWLVDIGVKHVCL 102 (289)
Q Consensus 81 g~~~v~~i~~Wc~~~GI~~LTl 102 (289)
-++.+.+++.-|.++|+..+++
T Consensus 115 ~~~~vv~vmd~~k~aG~~~v~l 136 (141)
T PRK11024 115 PYDEIIKALNLLHSAGVKSVGL 136 (141)
T ss_pred CHHHHHHHHHHHHHcCCCeEEE
Confidence 5778888888888888888776
No 58
>cd05006 SIS_GmhA Phosphoheptose isomerase is a member of the SIS (Sugar ISomerase) superfamily. Phosphoheptose isomerase catalyzes the isomerization of sedoheptulose 7-phosphate into D-glycero-D-mannoheptose 7-phosphate. This is the first step of the biosynthesis of gram-negative bacteria inner core lipopolysaccharide precursor, L-glycero-D-mannoheptose (Gmh).
Probab=22.70 E-value=1.6e+02 Score=24.83 Aligned_cols=39 Identities=21% Similarity=0.288 Sum_probs=32.1
Q ss_pred CCCeEEEEEcCCCCCChHHHHHHHHHHHhcCCCEEEEEeeC
Q 022957 66 KLRYLAIVIESEEAYHIPAVIQLLQWLVDIGVKHVCLYDAE 106 (289)
Q Consensus 66 ~P~HlaVImdgn~~~g~~~v~~i~~Wc~~~GI~~LTlYd~s 106 (289)
.|..+.|++...+ ....+.+++.+|.+.|++.+++=+..
T Consensus 100 ~~~Dv~I~iS~SG--~t~~~i~~~~~ak~~Ga~vI~IT~~~ 138 (177)
T cd05006 100 QPGDVLIGISTSG--NSPNVLKALEAAKERGMKTIALTGRD 138 (177)
T ss_pred CCCCEEEEEeCCC--CCHHHHHHHHHHHHCCCEEEEEeCCC
Confidence 4678999998665 46789999999999999999887653
No 59
>TIGR02801 tolR TolR protein. The model describes the inner membrane protein TolR, part of the TolR/TolQ complex that transduces energy from the proton-motive force, through TolA, to an outer membrane complex made up of TolB and Pal (peptidoglycan-associated lipoprotein). The complex is required to maintain outer membrane integrity, and defects may cause a defect in the import of some organic compounds in addition to the resulting morphologic. While several gene pairs homologous to talR and tolQ may be found in a single genome, but the scope of this model is set to favor finding only bone fide TolR, supported by operon structure as well as by score.
Probab=22.58 E-value=1.7e+02 Score=23.55 Aligned_cols=23 Identities=26% Similarity=0.398 Sum_probs=18.2
Q ss_pred CChHHHHHHHHHHHhcCCCEEEE
Q 022957 80 YHIPAVIQLLQWLVDIGVKHVCL 102 (289)
Q Consensus 80 ~g~~~v~~i~~Wc~~~GI~~LTl 102 (289)
-.++.+.+++.-|.++|+..+++
T Consensus 104 ~~~~~vv~vmd~~~~~G~~~v~l 126 (129)
T TIGR02801 104 VPYGEVIKVMALLKQAGIEKVGL 126 (129)
T ss_pred CCHHHHHHHHHHHHHcCCCeEEE
Confidence 36788888888888888888775
No 60
>cd01477 vWA_F09G8-8_type VWA F09G8.8 type: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of mo
Probab=22.50 E-value=1.2e+02 Score=26.46 Aligned_cols=38 Identities=5% Similarity=0.034 Sum_probs=24.1
Q ss_pred CCCCeEEEEEcCCCCCChHHHHHHHHHHHhcCCCEEEE
Q 022957 65 DKLRYLAIVIESEEAYHIPAVIQLLQWLVDIGVKHVCL 102 (289)
Q Consensus 65 ~~P~HlaVImdgn~~~g~~~v~~i~~Wc~~~GI~~LTl 102 (289)
..|+|+-++.||....+.....+.+.-..+.||...||
T Consensus 130 ~v~kvvIllTDg~~~~~~~~~~~~a~~l~~~GI~i~tV 167 (193)
T cd01477 130 NYKKVVIVFASDYNDEGSNDPRPIAARLKSTGIAIITV 167 (193)
T ss_pred CCCeEEEEEecCccCCCCCCHHHHHHHHHHCCCEEEEE
Confidence 46899999988743222233455565667888865554
No 61
>TIGR02468 sucrsPsyn_pln sucrose phosphate synthase/possible sucrose phosphate phosphatase, plant. Members of this family are sucrose-phosphate synthases of plants. This enzyme is known to exist in multigene families in several species of both monocots and dicots. The N-terminal domain is the glucosyltransferase domain. Members of this family also have a variable linker region and a C-terminal domain that resembles sucrose phosphate phosphatase (SPP) (EC 3.1.3.24) (see TIGR01485), the next and final enzyme of sucrose biosynthesis. The SPP-like domain likely serves a binding and not a catalytic function, as the reported SPP is always encoded by a distinct protein.
Probab=22.37 E-value=3e+02 Score=30.85 Aligned_cols=25 Identities=16% Similarity=0.108 Sum_probs=19.2
Q ss_pred cHHHHHHHHHhcCCCCC--CCcEEEEeCC
Q 022957 182 TEAHMSEALRAVGCKGP--EPDLLLVYGP 208 (289)
Q Consensus 182 ~e~~l~~~L~~~~~~~p--dPDLlIrtGg 208 (289)
+-+.+.+.|.. .++| +||.+|.-+|
T Consensus 814 ~l~~~~~~l~~--~~lp~~~PD~lI~~vG 840 (1050)
T TIGR02468 814 TISEIQSFLKS--GGLNPTDFDALICNSG 840 (1050)
T ss_pred CHHHHHHHHHh--CCCCCCCCCEEEeCCC
Confidence 45666677764 5788 9999998888
No 62
>PRK14185 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=21.94 E-value=3.2e+02 Score=25.94 Aligned_cols=55 Identities=20% Similarity=0.203 Sum_probs=39.2
Q ss_pred CCCCeEEEEEcCCCCCChHHHHHHHHHHHhcCCCEEEEEeeCCCCCcChHHHHHHhhh
Q 022957 65 DKLRYLAIVIESEEAYHIPAVIQLLQWLVDIGVKHVCLYDAEGILKKSKESILGKLNN 122 (289)
Q Consensus 65 ~~P~HlaVImdgn~~~g~~~v~~i~~Wc~~~GI~~LTlYd~sg~lKr~~~~L~~~l~~ 122 (289)
..++.||+|+-|++..+..-++.....|.+.||..- ++.+.++. ..+++.+.+.+
T Consensus 29 g~~P~LaiI~vg~d~as~~Yv~~k~k~a~~~Gi~~~-~~~l~~~~--~~~el~~~I~~ 83 (293)
T PRK14185 29 GKRPHLAAILVGHDGGSETYVANKVKACEECGFKSS-LIRYESDV--TEEELLAKVRE 83 (293)
T ss_pred CCCCeEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEE-EEECCCCC--CHHHHHHHHHH
Confidence 345699999999986566668888999999999875 55665543 24455555543
No 63
>PF13305 WHG: WHG domain; PDB: 1ZK8_B 3ON2_B 3CJD_B.
Probab=20.36 E-value=1.3e+02 Score=21.31 Aligned_cols=19 Identities=16% Similarity=0.279 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 022957 19 NLGLWIIWLLIHFAVDLWY 37 (289)
Q Consensus 19 ~~~~~ll~~liH~~~sl~~ 37 (289)
..+...+|..+|.+.+|+.
T Consensus 59 ~~~~~~~wa~~HG~~~L~~ 77 (81)
T PF13305_consen 59 REIALALWAAVHGLASLFL 77 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 5677789999999999853
No 64
>cd05009 SIS_GlmS_GlmD_2 SIS (Sugar ISomerase) domain repeat 2 found in Glucosamine 6-phosphate synthase (GlmS) and Glucosamine-6-phosphate deaminase (GlmD). The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. GlmS contains a N-terminal glutaminase domain and two C-terminal SIS domains and catalyzes the first step in hexosamine metabolism, converting fructose 6-phosphate into glucosamine 6-phosphate using glutamine as nitrogen source. The glutaminase domain hydrolyzes glutamine to glutamate and ammonia. Ammonia is transferred through a channel to the isomerase domain for glucosamine 6-phosphate synthesis. The end product of the pathway is N-acetylglucosamine, which plays multiple roles in eukaryotic cells including being a building block of bacterial and fungal cell walls. In the absence of glutamine, GlmS catalyzes the isomerization of fructose 6-phosphate into glucose 6- phosphate (PGI-like activity). Glucosamine-6-phosphate deaminase (GlmD) cont
Probab=20.34 E-value=1.8e+02 Score=23.30 Aligned_cols=39 Identities=15% Similarity=0.137 Sum_probs=30.9
Q ss_pred CCeEEEEEcCCCCCChHHHHHHHHHHHhcCCCEEEEEeeC
Q 022957 67 LRYLAIVIESEEAYHIPAVIQLLQWLVDIGVKHVCLYDAE 106 (289)
Q Consensus 67 P~HlaVImdgn~~~g~~~v~~i~~Wc~~~GI~~LTlYd~s 106 (289)
|.++.|++...+. ..+.+.+++.++.+.|.+.+++=...
T Consensus 61 ~~~~vi~is~~g~-t~~~~~~~~~~~~~~~~~vi~it~~~ 99 (153)
T cd05009 61 EGTPVIFLAPEDR-LEEKLESLIKEVKARGAKVIVITDDG 99 (153)
T ss_pred CCCcEEEEecCCh-hHHHHHHHHHHHHHcCCEEEEEecCC
Confidence 6788888886652 45669999999999999999886544
Done!