Query 022957
Match_columns 289
No_of_seqs 213 out of 1174
Neff 6.3
Searched_HMMs 29240
Date Mon Mar 25 13:58:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022957.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/022957hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3sgv_B Undecaprenyl pyrophosph 100.0 1.4E-57 4.9E-62 413.1 15.9 193 60-259 11-249 (253)
2 4h8e_A Undecaprenyl pyrophosph 100.0 5.8E-57 2E-61 409.7 15.0 186 65-257 23-254 (256)
3 1f75_A Undecaprenyl pyrophosph 100.0 6.4E-57 2.2E-61 409.8 13.6 185 65-256 19-249 (249)
4 3qas_B Undecaprenyl pyrophosph 100.0 2.1E-56 7.1E-61 406.9 14.7 188 65-259 12-249 (253)
5 2vg3_A Undecaprenyl pyrophosph 100.0 5.1E-56 1.7E-60 409.5 16.6 185 65-256 54-284 (284)
6 2d2r_A Undecaprenyl pyrophosph 100.0 1.3E-56 4.4E-61 406.8 12.0 186 64-257 13-244 (245)
7 3ugs_B Undecaprenyl pyrophosph 100.0 7.1E-55 2.4E-59 389.4 17.3 176 64-255 4-225 (225)
8 2vg0_A Short-chain Z-isoprenyl 100.0 3.1E-53 1.1E-57 381.3 14.6 182 65-249 1-227 (227)
9 1xho_A Chorismate mutase; sout 54.4 15 0.0005 30.3 4.4 33 145-177 39-71 (148)
10 1dbf_A Protein (chorismate mut 46.8 18 0.0006 29.1 3.7 32 146-177 11-42 (127)
11 3ngx_A Bifunctional protein fo 44.4 63 0.0021 29.1 7.5 53 65-121 25-77 (276)
12 1ufy_A Chorismate mutase; shik 44.1 21 0.00073 28.4 3.8 32 146-177 10-42 (122)
13 3pzj_A Probable acetyltransfer 31.4 92 0.0032 24.8 6.0 41 69-109 121-165 (209)
14 2p6v_A Transcription initiatio 30.9 31 0.0011 27.1 2.7 48 145-202 32-79 (114)
15 2pfu_A Biopolymer transport EX 28.6 53 0.0018 23.8 3.7 23 81-103 69-91 (99)
16 2h7b_A Core-binding factor, ML 27.4 72 0.0025 24.6 4.2 41 152-202 24-64 (105)
17 2j8m_A Acetyltransferase PA486 26.5 1.3E+02 0.0043 22.9 5.8 38 71-108 87-127 (172)
18 1eij_A Hypothetical protein MT 25.1 1.1E+02 0.0039 22.3 4.8 38 151-193 31-68 (80)
19 3eo4_A Uncharacterized protein 24.7 1.6E+02 0.0054 21.9 6.0 42 68-109 91-136 (164)
20 2ge3_A Probable acetyltransfer 24.6 1E+02 0.0035 23.3 4.9 39 71-109 90-131 (170)
21 2kix_A BM2 protein; channel, t 23.8 1.1E+02 0.0037 18.2 3.6 21 11-31 8-28 (33)
22 2fh0_A Hypothetical 16.0 kDa p 23.1 1.2E+02 0.0039 22.4 4.5 37 152-193 30-66 (81)
23 1vhs_A Similar to phosphinothr 21.8 1E+02 0.0035 23.8 4.4 29 81-109 99-127 (175)
24 2ksn_A Ubiquitin domain-contai 21.8 1.3E+02 0.0044 24.3 4.8 60 148-219 51-110 (137)
25 3fbu_A Acetyltransferase, GNAT 21.7 1.4E+02 0.0048 22.1 5.2 29 81-109 100-129 (168)
26 2jlm_A Putative phosphinothric 20.6 1.8E+02 0.0062 22.5 5.8 40 70-109 94-136 (182)
27 3igr_A Ribosomal-protein-S5-al 20.4 1.4E+02 0.0049 22.4 5.0 41 69-109 98-142 (184)
28 3f8k_A Protein acetyltransfera 20.3 1.5E+02 0.005 21.8 4.9 28 81-108 91-118 (160)
No 1
>3sgv_B Undecaprenyl pyrophosphate synthase; alpha/beta, transferase; HET: 2BJ; 1.61A {Escherichia coli} PDB: 1jp3_A* 1v7u_A* 1x06_A* 1x07_A* 2e98_A* 2e99_A* 2e9a_A* 2e9c_A* 2e9d_A* 1ueh_A 3sgt_B* 3qas_B* 3sgx_A* 3sh0_B* 3th8_A* 4h2j_A* 4h2m_A* 4h2o_B* 4h38_A* 4h3a_A* ...
Probab=100.00 E-value=1.4e-57 Score=413.15 Aligned_cols=193 Identities=17% Similarity=0.225 Sum_probs=152.6
Q ss_pred hhcCCCCCCeEEEEEcCCCC--------------CChHHHHHHHHHHHhcCCCEEEEEeeC-CCCCcChHH---HHHHhh
Q 022957 60 KALDIDKLRYLAIVIESEEA--------------YHIPAVIQLLQWLVDIGVKHVCLYDAE-GILKKSKES---ILGKLN 121 (289)
Q Consensus 60 ~~~~~~~P~HlaVImdgn~~--------------~g~~~v~~i~~Wc~~~GI~~LTlYd~s-g~lKr~~~~---L~~~l~ 121 (289)
...+.++|+|||||||||+| .|++++.+++.||.++||++||||+|| +||||+.++ ||+++.
T Consensus 11 ~~~~~~iP~HVAiIMDGNrRwAk~rgl~r~~GH~~G~~~l~~i~~~c~~lGI~~lTlYaFStENwkRp~~EV~~Lm~L~~ 90 (253)
T 3sgv_B 11 EKLPAHGCRHVAIIMDGNGRWAKKQGKIRAFGHKAGAKSVRRAVSFAANNGIEALTLYAFSSENWNRPAQEVSALMELFV 90 (253)
T ss_dssp --CCTTCCSEEEEEECCHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTCSEEEEECC-----------CHHHHHHHH
T ss_pred cccCCCCCCEEEEEecCcHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEEEchhccCCCHHHHHHHHHHHH
Confidence 44556789999999999986 299999999999999999999999997 999999864 776654
Q ss_pred hc----------CC-----------CCch------hhhhhccCCCceEEEEEeCCCcHHHHHHHHHHHHHHHHHcCCCCc
Q 022957 122 NA----------TL-----------FEEA------GESNLLLDHKHITLEFASFPDGKEAVAKAANLLFMKYVKLGGSGK 174 (289)
Q Consensus 122 ~~----------~~-----------~~~~------~~~~~t~~~~~l~l~l~s~ydGR~eIv~a~r~l~~~~~~~~~~~~ 174 (289)
.. ++ +|.. ..++.|++|++++||+|++||||+||++|+|++++++ +.|.+++
T Consensus 91 ~~l~~~~~~l~~~~vrvr~iGd~~~Lp~~l~~~i~~ae~~T~~n~~~~lnia~~YggR~EI~~Avr~ia~~v-~~g~l~~ 169 (253)
T 3sgv_B 91 WALDSEVKSLHRHNVRLRIIGDTSRFNSRLQERIRKSEALTAGNTGLTLNIAANYGGRWDIVQGVRQLAEKV-QQGNLQP 169 (253)
T ss_dssp TTHHHHHHHHHHTTCEEEEESCGGGSCHHHHHHHHHHHHHHTTCCSCEEEEESSCCHHHHHHHHHHHHHHHH-HHTSSCG
T ss_pred HHHHHHHHHHHHCCeEEEEEeehhhCCHHHHHHHHHHHHHhccCCCeEEEEEecCCCHHHHHHHHHHHHHHH-HcCCCCh
Confidence 21 11 3321 1345699999999999999999999999999999886 6778888
Q ss_pred ccccccccHHHHHHHHHhcCCCCCCCcEEEEeCCCcccCCCchhhhhhheEEecCCC-CCCCHHHHHHHHHHHhhhhhcc
Q 022957 175 IQEEKIFTEAHMSEALRAVGCKGPEPDLLLVYGPVRCHLGFPAWRIRYTEIVHMGRL-KSMRYGSLLKAIYKFTMVRQNY 253 (289)
Q Consensus 175 ~di~~~i~e~~l~~~L~~~~~~~pdPDLlIrtGg~~rLsgFlpWQiryTEi~~~~~~-p~f~~~df~~AL~~Y~~rerRf 253 (289)
++ ++|+.|+++|++ .++|||||+||||||.|||||||||++||||||++.+ |||++.||.+||.+||+|+|||
T Consensus 170 ~~----I~e~~i~~~L~t--~~~PdpDLlIRTsGE~RLSnFLLWQ~aYsElyFtd~lWPdF~~~dl~~Ai~~yq~R~RRf 243 (253)
T 3sgv_B 170 DQ----IDEEMLNQHVCM--HELAPVDLVIRTGGEHRISNFLLWQIAYAELYFTDVLWPDFDEQDFEGALNAFANRERRF 243 (253)
T ss_dssp GG----CCHHHHHTTSTT--TTSCCCCEEEEESSCCCCTTSCSGGGTTCEEEECCSCGGGCCHHHHHHHHHHHHHHC---
T ss_pred hh----CCHHHHHHhhcc--cCCCCCcEEEEecCCCcccCchHHHHcCEEEEECCCCCccCCHHHHHHHHHHHHhhhccC
Confidence 87 899999999994 7899999999999999999999999999999999996 9999999999999999999999
Q ss_pred CCcchh
Q 022957 254 GKSSFN 259 (289)
Q Consensus 254 Gk~~~~ 259 (289)
|+++.+
T Consensus 244 G~~~~~ 249 (253)
T 3sgv_B 244 GGTEPG 249 (253)
T ss_dssp ------
T ss_pred CCCccc
Confidence 998654
No 2
>4h8e_A Undecaprenyl pyrophosphate synthase; alpha-helix, prenyl transferase, cell WALL biosynthesis, FAR diphosphate binding; HET: FPP; 1.30A {Staphylococcus aureus subsp}
Probab=100.00 E-value=5.8e-57 Score=409.75 Aligned_cols=186 Identities=18% Similarity=0.285 Sum_probs=164.8
Q ss_pred CCCCeEEEEEcCCCC--------------CChHHHHHHHHHHHhcCCCEEEEEeeC-CCCCcChHH---HHHHhhhc---
Q 022957 65 DKLRYLAIVIESEEA--------------YHIPAVIQLLQWLVDIGVKHVCLYDAE-GILKKSKES---ILGKLNNA--- 123 (289)
Q Consensus 65 ~~P~HlaVImdgn~~--------------~g~~~v~~i~~Wc~~~GI~~LTlYd~s-g~lKr~~~~---L~~~l~~~--- 123 (289)
++|+|||||||||+| .|++++.+++.||.++||++||+|+|| +||||+.++ ||+++...
T Consensus 23 ~iP~HVAiIMDGN~RwAk~rgl~r~~GH~~G~~~~~~iv~~c~~lGI~~lTlYaFStENwkRp~~EV~~Lm~L~~~~l~~ 102 (256)
T 4h8e_A 23 NIPEHIAIIMDGNGRWAKKRKMPRIKGHYEGMQTIKKITRIASDIGVKYLTLYAFSTENWSRPESEVNYIMNLPVNFLKT 102 (256)
T ss_dssp CCCSEEEEECCCHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHTCSEEEEEEEETTGGGSCHHHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEEcCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEEEchhhhCCCHHHHHHHHHHHHHHHHH
Confidence 689999999999985 299999999999999999999999996 999999875 66655321
Q ss_pred -------CC-----------CCch------hhhhhccCCCceEEEEEeCCCcHHHHHHHHHHHHHHHHHcCCCCcccccc
Q 022957 124 -------TL-----------FEEA------GESNLLLDHKHITLEFASFPDGKEAVAKAANLLFMKYVKLGGSGKIQEEK 179 (289)
Q Consensus 124 -------~~-----------~~~~------~~~~~t~~~~~l~l~l~s~ydGR~eIv~a~r~l~~~~~~~~~~~~~di~~ 179 (289)
++ +|.. .+++.|+++++++||+|++||||+||++|+|++++++ +.|.+++++
T Consensus 103 ~~~~l~~~~vrvr~iGd~~~Lp~~~~~~i~~ae~~T~~n~~~~lnia~~YggR~EI~~Avr~i~~~v-~~g~l~~~~--- 178 (256)
T 4h8e_A 103 FLPELIEKNVKVETIGFTDKLPKSTIEAINNAKEKTANNTGLKLIFAINYGGRAELVHSIKNMFDEL-HQQGLNSDI--- 178 (256)
T ss_dssp HHHHHHHTTCEEEEESCGGGSCHHHHHHHHHHHHHTTTCCSCEEEEEEEECHHHHHHHHHHHHHHHH-HHTTCCGGG---
T ss_pred HHHHHHHcCeEEEEecCcccCCHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCHHHHHHHHHHHHHHH-HcCCCChhh---
Confidence 11 3321 1345799999999999999999999999999999886 677888887
Q ss_pred cccHHHHHHHHHhcCCCCCCCcEEEEeCCCcccCCCchhhhhhheEEecCCC-CCCCHHHHHHHHHHHhhhhhccCCcc
Q 022957 180 IFTEAHMSEALRAVGCKGPEPDLLLVYGPVRCHLGFPAWRIRYTEIVHMGRL-KSMRYGSLLKAIYKFTMVRQNYGKSS 257 (289)
Q Consensus 180 ~i~e~~l~~~L~~~~~~~pdPDLlIrtGg~~rLsgFlpWQiryTEi~~~~~~-p~f~~~df~~AL~~Y~~rerRfGk~~ 257 (289)
++|+.|+++|++ .++|||||+||||||.|||||||||++||||||++.+ |||++.||.+||.+||+|+||||++.
T Consensus 179 -I~e~~i~~~L~t--~~~PdpDLlIRTsGE~RLSnFLLWQ~aYsElyF~d~lWPdF~~~dl~~Ai~~yq~R~RRfG~~~ 254 (256)
T 4h8e_A 179 -IDETYINNHLMT--KDYPDPELLIRTSGEQRISNFLIWQVSYSEFIFNQKLWPDFDEDELIKCIKIYQSRQRRFGGLS 254 (256)
T ss_dssp -CCHHHHHTTSTT--TTSCCCSEEEECSSCCCCTTSSTTTTTTCEEEECCSCGGGCCHHHHHHHHHHHHHCCCCTTCC-
T ss_pred -CCHHHHHHhCCC--CCCCCCcEEEEcCCCCcccCchHHHHcCeEEEECCCCCccCCHHHHHHHHHHHHhhhhccCCCC
Confidence 899999999994 7999999999999999999999999999999999996 99999999999999999999999984
No 3
>1f75_A Undecaprenyl pyrophosphate synthetase; parallel beta sheet, NEW fold for isoprenoid synthase, peptidoglycan synthesis, transferase; 2.20A {Micrococcus luteus} SCOP: c.101.1.1
Probab=100.00 E-value=6.4e-57 Score=409.80 Aligned_cols=185 Identities=20% Similarity=0.334 Sum_probs=147.0
Q ss_pred CCCCeEEEEEcCCCC--------------CChHHHHHHHHHHHhcCCCEEEEEeeC-CCCCcChHH---HHHHhhh----
Q 022957 65 DKLRYLAIVIESEEA--------------YHIPAVIQLLQWLVDIGVKHVCLYDAE-GILKKSKES---ILGKLNN---- 122 (289)
Q Consensus 65 ~~P~HlaVImdgn~~--------------~g~~~v~~i~~Wc~~~GI~~LTlYd~s-g~lKr~~~~---L~~~l~~---- 122 (289)
++|+|||||||||+| .|++++++++.||.++||++||||+|| +||||+.++ ||+++..
T Consensus 19 ~iP~HVAiImDGN~RwA~~~gl~~~~GH~~G~~~l~~iv~~c~~~GI~~lTlYaFSteNwkRp~~EV~~Lm~l~~~~l~~ 98 (249)
T 1f75_A 19 QIPKHIAIIMDGNGRWAKQKKMPRIKGHYEGMQTVRKITRYASDLGVKYLTLYAFSTENWSRPKDEVNYLMKLPGDFLNT 98 (249)
T ss_dssp TSCSEEEEEECCHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEEC------------CGGGTHHHHHHHH
T ss_pred CCCCEEEEEecCCcHHHHHCCCChhhhHHHHHHHHHHHHHHHHHcCCCEEEEEEecccccCCCHHHHHHHHHHHHHHHHH
Confidence 589999999999974 289999999999999999999999996 999999864 4443321
Q ss_pred ------cCC-----------CCch------hhhhhccCCCceEEEEEeCCCcHHHHHHHHHHHHHHHHHcCCCCcccccc
Q 022957 123 ------ATL-----------FEEA------GESNLLLDHKHITLEFASFPDGKEAVAKAANLLFMKYVKLGGSGKIQEEK 179 (289)
Q Consensus 123 ------~~~-----------~~~~------~~~~~t~~~~~l~l~l~s~ydGR~eIv~a~r~l~~~~~~~~~~~~~di~~ 179 (289)
.++ +|.. .+++.|+++++++|++|++||||+||++|+|++++++ +.|++++++
T Consensus 99 ~~~~l~~~~vr~~~iG~~~~lp~~~~~~i~~~~~~T~~n~~l~lnia~~YggR~eIv~A~r~l~~~v-~~g~l~~~~--- 174 (249)
T 1f75_A 99 FLPELIEKNVKVETIGFIDDLPDHTKKAVLEAKEKTKHNTGLTLVFALNYGGRKEIISAVQLIAERY-KSGEISLDE--- 174 (249)
T ss_dssp HHHHHHHTTCEEEEESCGGGSCHHHHHHHHHHHHTTTTCCSCEEEEECSCCHHHHHHHHHHHHHHHH-HTTSSCGGG---
T ss_pred HHHHHHHcCeEEEEeCChhhCCHHHHHHHHHHHHhhcCCCceEEEEEecCCCHHHHHHHHHHHHHHH-HcCCCChHh---
Confidence 111 2321 1235689999999999999999999999999999885 678888887
Q ss_pred cccHHHHHHHHHhcCCCCCCCcEEEEeCCCcccCCCchhhhhhheEEecCCC-CCCCHHHHHHHHHHHhhhhhccCCc
Q 022957 180 IFTEAHMSEALRAVGCKGPEPDLLLVYGPVRCHLGFPAWRIRYTEIVHMGRL-KSMRYGSLLKAIYKFTMVRQNYGKS 256 (289)
Q Consensus 180 ~i~e~~l~~~L~~~~~~~pdPDLlIrtGg~~rLsgFlpWQiryTEi~~~~~~-p~f~~~df~~AL~~Y~~rerRfGk~ 256 (289)
++++.|+++|++ .++|||||+|||||+.|||||||||++||||||++++ |||++.+|.+||.+||+|+||||+.
T Consensus 175 -I~e~~i~~~L~t--~~~PdpDLlIRTsGe~RLSnFLlWQ~aysElyF~~~lWPdF~~~~~~~Al~~y~~r~RRfG~~ 249 (249)
T 1f75_A 175 -ISETHFNEYLFT--ANMPDPELLIRTSGEERLSNFLIWQCSYSEFVFIDEFWPDFNEESLAQCISIYQNRHRRFGGL 249 (249)
T ss_dssp -CSHHHHGGGSTT--TTSCCCSEEEECTTCCBCCSCSTTTTTTCEEEECCSCGGGCCHHHHHHHHHHHTTC-------
T ss_pred -CCHHHHHHhhcc--CCCCCCcEEEEcCCCccccCCchhhhhceEEEECCCCCCcCCHHHHHHHHHHHhcCccCCCCC
Confidence 889999999984 7899999999999999999999999999999999996 9999999999999999999999973
No 4
>3qas_B Undecaprenyl pyrophosphate synthase; alpha-helix, isoprenoid biosynthesis, transferase; 1.70A {Escherichia coli} PDB: 1jp3_A* 1v7u_A* 1x06_A* 1x07_A* 2e98_A* 2e99_A* 2e9a_A* 2e9c_A* 2e9d_A* 1ueh_A 1x09_A* 1x08_A*
Probab=100.00 E-value=2.1e-56 Score=406.86 Aligned_cols=188 Identities=16% Similarity=0.218 Sum_probs=146.2
Q ss_pred CCC----CeEEEEEcCCCC--------------CChHHHHHHHHHHHhcCCCEEEEEeeC-CCCCcChHH---HHHHhhh
Q 022957 65 DKL----RYLAIVIESEEA--------------YHIPAVIQLLQWLVDIGVKHVCLYDAE-GILKKSKES---ILGKLNN 122 (289)
Q Consensus 65 ~~P----~HlaVImdgn~~--------------~g~~~v~~i~~Wc~~~GI~~LTlYd~s-g~lKr~~~~---L~~~l~~ 122 (289)
++| +|||||||||+| .|++++++++.||.++||++||||+|| +||||+.++ ||+++..
T Consensus 12 ~iP~~~~~HVAiImDGN~RwAk~~gl~r~~GH~~G~~~l~~iv~~c~~~GI~~lTlYaFStENwkRp~~EV~~Lm~l~~~ 91 (253)
T 3qas_B 12 KLPAHGCRHVAIIMDGNGRWAKKQGKIRAFGHKAGAKSVRRAVSFAANNGIEALTLYAFSSENWNRPAQEVSALMELFVW 91 (253)
T ss_dssp -CCTTCCSEEEEECCCHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTCSEEEEECCCC-----------------CT
T ss_pred CCCCCCCCEEEEEecCCHHHHHHcCCChhhhHHHHHHHHHHHHHHHHHCCCCEEEEEEecCcccCCCHHHHHHHHHHHHH
Confidence 578 999999999974 289999999999999999999999997 999999864 5654321
Q ss_pred ----------cC-----------CCCch------hhhhhccCCCceEEEEEeCCCcHHHHHHHHHHHHHHHHHcCCCCcc
Q 022957 123 ----------AT-----------LFEEA------GESNLLLDHKHITLEFASFPDGKEAVAKAANLLFMKYVKLGGSGKI 175 (289)
Q Consensus 123 ----------~~-----------~~~~~------~~~~~t~~~~~l~l~l~s~ydGR~eIv~a~r~l~~~~~~~~~~~~~ 175 (289)
.+ .+|.. .+++.|+++++++|++|++||||+||++|+|++++++ +.|+++++
T Consensus 92 ~l~~~~~~l~~~~vrlr~iG~~~~lp~~~~~~i~~a~~~T~~n~~l~lnia~~YgGR~EIv~A~r~l~~~v-~~g~l~~~ 170 (253)
T 3qas_B 92 ALDSEVKSLHRHNVRLRIIGDTSRFNSRLQERIRKSEALTAGNTGLTLNIAANYGGRWDIVQGVRQLAEKV-QQGNLQPD 170 (253)
T ss_dssp HHHHHHHHHHHTTCEEEEESCCTTSCHHHHHHHHHHHHHHTTCCSCEEEEESSCCHHHHHHHHHHHHHHHH-HTTSCCGG
T ss_pred HHHHHHHHHHHCCeEEEEeCChHhCCHHHHHHHHHHHHHhcCCCceEEEEEecCCCHHHHHHHHHHHHHHH-HcCCCChH
Confidence 11 12321 1245689999999999999999999999999999885 67888888
Q ss_pred cccccccHHHHHHHHHhcCCCCCCCcEEEEeCCCcccCCCchhhhhhheEEecCCC-CCCCHHHHHHHHHHHhhhhhccC
Q 022957 176 QEEKIFTEAHMSEALRAVGCKGPEPDLLLVYGPVRCHLGFPAWRIRYTEIVHMGRL-KSMRYGSLLKAIYKFTMVRQNYG 254 (289)
Q Consensus 176 di~~~i~e~~l~~~L~~~~~~~pdPDLlIrtGg~~rLsgFlpWQiryTEi~~~~~~-p~f~~~df~~AL~~Y~~rerRfG 254 (289)
+ ++++.|+++|++ .++|||||+|||||+.|||||||||++||||||++++ |||++.+|.+||.+||+|+||||
T Consensus 171 ~----I~e~~i~~~L~t--~~~PdpDLlIRTsGe~RLSnFLlWQ~aysElyF~~~lWPdF~~~~~~~Al~~y~~R~RRfG 244 (253)
T 3qas_B 171 Q----IDEEMLNQHVCM--HELAPVDLVIRTGGEHRISNFLLWQIAYAELYFTDVLWPDFDEQDFEGALNAFANRERRFG 244 (253)
T ss_dssp G----CCHHHHHTTSTT--TTSCCCCEEEECSSCCCCTTSCSGGGTTCEEEECCSCGGGCCHHHHHHHHHHHHHHC----
T ss_pred H----CCHHHHHHhhcc--CCCCCCcEEEEcCCCccccCCchhhhcCEEEEECCCCCCcCCHHHHHHHHHHHhcCCcCCC
Confidence 7 889999999984 7899999999999999999999999999999999997 99999999999999999999999
Q ss_pred Ccchh
Q 022957 255 KSSFN 259 (289)
Q Consensus 255 k~~~~ 259 (289)
++.++
T Consensus 245 ~~~~~ 249 (253)
T 3qas_B 245 GTEPG 249 (253)
T ss_dssp -----
T ss_pred CCCCC
Confidence 97543
No 5
>2vg3_A Undecaprenyl pyrophosphate synthetase; transferase, cell WALL biogenesis/degradation, cell cycle, P transferase; HET: GPP; 1.8A {Mycobacterium tuberculosis} PDB: 2vg2_A* 2vg4_A
Probab=100.00 E-value=5.1e-56 Score=409.46 Aligned_cols=185 Identities=18% Similarity=0.270 Sum_probs=163.0
Q ss_pred CCCCeEEEEEcCCCC--------------CChHHHHHHHHHHHhcCCCEEEEEeeC-CCCCcChHH---HHHHhhhc---
Q 022957 65 DKLRYLAIVIESEEA--------------YHIPAVIQLLQWLVDIGVKHVCLYDAE-GILKKSKES---ILGKLNNA--- 123 (289)
Q Consensus 65 ~~P~HlaVImdgn~~--------------~g~~~v~~i~~Wc~~~GI~~LTlYd~s-g~lKr~~~~---L~~~l~~~--- 123 (289)
++|+|||||||||+| .|++++++++.||.++||++||||+|| +||||+.++ ||+++...
T Consensus 54 ~iP~HVAIIMDGN~RwAk~rgl~r~~GH~~G~~~l~~iv~~c~~lGI~~LTlYaFStENwkRp~~EV~~Lm~L~~~~l~~ 133 (284)
T 2vg3_A 54 RLPNHVAIVMDGNGRWATQRGLARTEGHKMGEAVVIDIACGAIELGIKWLSLYAFSTENWKRSPEEVRFLMGFNRDVVRR 133 (284)
T ss_dssp TSCSEEEEECCCHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEEEETTGGGSCHHHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEEecCChHHHHHcCCchhHHHHHHHHHHHHHHHHHHHcCCCEEEEEeccCcccCCCHHHHHHHHHHHHHHHHH
Confidence 589999999999974 289999999999999999999999996 999999874 66654321
Q ss_pred -------C-----------CCCch------hhhhhccCCCceEEEEEeCCCcHHHHHHHHHHHHHHHHHcCCCCcccccc
Q 022957 124 -------T-----------LFEEA------GESNLLLDHKHITLEFASFPDGKEAVAKAANLLFMKYVKLGGSGKIQEEK 179 (289)
Q Consensus 124 -------~-----------~~~~~------~~~~~t~~~~~l~l~l~s~ydGR~eIv~a~r~l~~~~~~~~~~~~~di~~ 179 (289)
+ .+|.. .+++.|+++++++||+|++||||+||++|+|++++++ +.|++++++
T Consensus 134 ~~~~l~~~~vrvrviG~~~~lp~~~~~~i~~ae~~T~~n~~l~Lnia~~YgGR~EIv~A~r~la~~v-~~g~l~~~d--- 209 (284)
T 2vg3_A 134 RRDTLKKLGVRIRWVGSRPRLWRSVINELAVAEEMTKSNDVITINYCVNYGGRTEITEATREIAREV-AAGRLNPER--- 209 (284)
T ss_dssp HHHHHHHTTEEEEEESCCTTSCHHHHHHHHHHHHHHTTCCSEEEEEEEEECHHHHHHHHHHHHHHHH-HTTSSCGGG---
T ss_pred HHHHHHHcCeEEEEeCChhhCCHHHHHHHHHHHHHhcCCCceEEEEEecCCCHHHHHHHHHHHHHHH-HcCCCChHH---
Confidence 1 12321 1345689999999999999999999999999998885 678888887
Q ss_pred cccHHHHHHHHHhcCCCCCCCcEEEEeCCCcccCCCchhhhhhheEEecCCC-CCCCHHHHHHHHHHHhhhhhccCCc
Q 022957 180 IFTEAHMSEALRAVGCKGPEPDLLLVYGPVRCHLGFPAWRIRYTEIVHMGRL-KSMRYGSLLKAIYKFTMVRQNYGKS 256 (289)
Q Consensus 180 ~i~e~~l~~~L~~~~~~~pdPDLlIrtGg~~rLsgFlpWQiryTEi~~~~~~-p~f~~~df~~AL~~Y~~rerRfGk~ 256 (289)
++|+.|+++|++ .++|||||+||||||+|||||||||++||||||++++ |||++.+|.+||.+||+|+||||++
T Consensus 210 -I~e~~i~~~L~t--~~~PdPDLlIRTsGE~RLSnFLlWQ~aYsElyF~d~lWPdF~~~df~~Al~~Yq~R~RRfG~~ 284 (284)
T 2vg3_A 210 -ITESTIARHLQR--PDIPDVDLFLRTSGEQRSSNFMLWQAAYAEYIFQDKLWPDYDRRDLWAACEEYASRTRRFGSA 284 (284)
T ss_dssp -CCHHHHHHHSSS--TTCCCCSEEEECTTCCCCTTTTTTTTTTCEEEECCSCGGGCCHHHHHHHHHHHHHSCCCSSCC
T ss_pred -CCHHHHHHHhcc--CCCCCCcEEEeCCCCccccCCCchhhcceEEEECCCCCCcCCHHHHHHHHHHHhccCCCCCCC
Confidence 889999999984 7899999999999999999999999999999999996 9999999999999999999999984
No 6
>2d2r_A Undecaprenyl pyrophosphate synthase; prenyltransferase, transferase; 1.88A {Helicobacter pylori} PDB: 2dtn_A
Probab=100.00 E-value=1.3e-56 Score=406.76 Aligned_cols=186 Identities=20% Similarity=0.229 Sum_probs=148.4
Q ss_pred CCCCCeEEEEEcCCCC--------------CChHHHHHHHHHHHhcCCCEEEEEeeC-CCCCcChH---HHHHHhhhc--
Q 022957 64 IDKLRYLAIVIESEEA--------------YHIPAVIQLLQWLVDIGVKHVCLYDAE-GILKKSKE---SILGKLNNA-- 123 (289)
Q Consensus 64 ~~~P~HlaVImdgn~~--------------~g~~~v~~i~~Wc~~~GI~~LTlYd~s-g~lKr~~~---~L~~~l~~~-- 123 (289)
.++|+|||||||||+| .|++++++++.||.++||++||||+|| +||||+.+ .||+++...
T Consensus 13 ~~iP~HVAiImDGN~RwAk~~gl~~~~GH~~G~~~l~~iv~~c~~~GI~~lTlYaFSteNwkRp~~EV~~Lm~l~~~~l~ 92 (245)
T 2d2r_A 13 DSTLKHLAIIMDGNGRWAKLKNKARAYGHKKGVKTLKDITIWCANHKLECLTLYAFSTENWKRPKSEVDFLMKMLKKYLK 92 (245)
T ss_dssp -CCCCEEEEECCCHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHTTTCSEEEEECC----------CHHHHHHHHHHHHH
T ss_pred CCCCCEEEEEecCchHHHHHCCCChhhhHHHHHHHHHHHHHHHHHcCCCEEEEEeccCcccCCCHHHHHHHHHHHHHHHH
Confidence 3789999999999974 289999999999999999999999996 99999974 466654321
Q ss_pred --------CC-----------CCch------hhhhhccCCCceEEEEEeCCCcHHHHHHHHHHHHHHHHHcCCCCccccc
Q 022957 124 --------TL-----------FEEA------GESNLLLDHKHITLEFASFPDGKEAVAKAANLLFMKYVKLGGSGKIQEE 178 (289)
Q Consensus 124 --------~~-----------~~~~------~~~~~t~~~~~l~l~l~s~ydGR~eIv~a~r~l~~~~~~~~~~~~~di~ 178 (289)
++ +|.. ..+..|+++++++||+|++||||+||++|+|++++++ +. ++++++
T Consensus 93 ~~~~~l~~~~vrl~~iG~~~~lp~~~~~~i~~a~~~T~~n~~l~lnia~~YggR~EIv~A~r~i~~~v-~~-~l~~~~-- 168 (245)
T 2d2r_A 93 DERSTYLDNNIRFRAIGDLEGFSKELRDTILQLENDTRHFKDFTQVLALNYGSKNELSRAFKSLLESP-PS-NISLLE-- 168 (245)
T ss_dssp HHHHHHHHTTCEEEEESCGGGSCHHHHHHHHHHHHHHTTCCSCEEEEECSCCHHHHHHHHHHHHHHSC-CT-TGGGCS--
T ss_pred HHHHHHHHcCeEEEEecChhhCCHHHHHHHHHHHHHhcCCCceEEEEEecCCCHHHHHHHHHHHHHHH-Hh-cCChhh--
Confidence 11 2321 1235689999999999999999999999999998875 33 666776
Q ss_pred ccccHHHHHHHHHhcCCCCCCCcEEEEeCCCcccCCCchhhhhhheEEecCCC-CCCCHHHHHHHHHHHhhhhhccCCcc
Q 022957 179 KIFTEAHMSEALRAVGCKGPEPDLLLVYGPVRCHLGFPAWRIRYTEIVHMGRL-KSMRYGSLLKAIYKFTMVRQNYGKSS 257 (289)
Q Consensus 179 ~~i~e~~l~~~L~~~~~~~pdPDLlIrtGg~~rLsgFlpWQiryTEi~~~~~~-p~f~~~df~~AL~~Y~~rerRfGk~~ 257 (289)
++++.|+++|++ .++|||||+|||||+.|||||||||++||||||++++ |||++.+|.+||.+||+|+||||++.
T Consensus 169 --I~e~~i~~~L~t--~~~PdpDLlIRTsGe~RLSnFLlWQ~aysElyF~~~lWPdF~~~~~~~Al~~y~~R~RRfG~~~ 244 (245)
T 2d2r_A 169 --SLENEISNRLDT--RNLPEVDLLLRTGGEMRLSNFLLWQSSYAELFFTPILWPDFTPKDLENIISDFYKRVRKFGELK 244 (245)
T ss_dssp --CCHHHHHTTSTT--TTSCCCSEEEECSSCCCCTTSSTTTTTTCEEEECCSCGGGCCHHHHHHHHHHHHHHCC------
T ss_pred --CCHHHHHHHhcc--CCCCCCcEEEEcCCCccccCCcchhhcceEEEECCCCCCcCCHHHHHHHHHHHHhcCccCCCCC
Confidence 889999999984 7899999999999999999999999999999999996 99999999999999999999999863
No 7
>3ugs_B Undecaprenyl pyrophosphate synthase; niaid, csgid, structural genomics, center for structural GEN infectious diseases; HET: FFT; 2.46A {Campylobacter jejuni} SCOP: c.101.1.0
Probab=100.00 E-value=7.1e-55 Score=389.45 Aligned_cols=176 Identities=18% Similarity=0.323 Sum_probs=153.3
Q ss_pred CCCCCeEEEEEcCCCC--------------CChHHHHHHHHHHHhcCCCEEEEEeeC-CCCCcChHH---HHHHhhhc--
Q 022957 64 IDKLRYLAIVIESEEA--------------YHIPAVIQLLQWLVDIGVKHVCLYDAE-GILKKSKES---ILGKLNNA-- 123 (289)
Q Consensus 64 ~~~P~HlaVImdgn~~--------------~g~~~v~~i~~Wc~~~GI~~LTlYd~s-g~lKr~~~~---L~~~l~~~-- 123 (289)
+++|+|||||||||+| .|++++.+++.||.++||++||+|+|| +||||+.++ ||+++...
T Consensus 4 m~~P~HVAiIMDGNrRwAk~rgl~r~~GH~~G~~~~~~i~~~c~~lGI~~lTlYaFStENw~Rp~~EV~~Lm~L~~~~l~ 83 (225)
T 3ugs_B 4 MNELKHLAVVMDGNRRWARAKGFLAKLGYSQGVKTMQKLMEVCMEENISNLSLFAFSTENWKRPKDEIDFIFELLDRCLD 83 (225)
T ss_dssp CCCCCEEEEEECCCC--------------CHHHHHHHHHHHHHHHTTCCEEEEEEEESGGGGSCHHHHHHHHHHHHHHHH
T ss_pred CCCCCeEEEeccCcHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEEEcccccCCCHHHHHHHHHHHHHHHH
Confidence 5789999999999996 199999999999999999999999996 999999875 66655321
Q ss_pred --------CC-----------CCch------hhhhhccCCCceEEEEEeCCCcHHHHHHHHHHHHHHHHHcCCCCccccc
Q 022957 124 --------TL-----------FEEA------GESNLLLDHKHITLEFASFPDGKEAVAKAANLLFMKYVKLGGSGKIQEE 178 (289)
Q Consensus 124 --------~~-----------~~~~------~~~~~t~~~~~l~l~l~s~ydGR~eIv~a~r~l~~~~~~~~~~~~~di~ 178 (289)
++ +|.. ..++.|+++++++||+|.+||||+||++|+|+++ +.| ++
T Consensus 84 ~~~~~l~~~~vrvr~iGd~~~Lp~~~~~~i~~ae~~T~~n~~~~lnia~~YggR~EI~~A~~~iv----~~g----~~-- 153 (225)
T 3ugs_B 84 EALEKFEKNNVRLRAIGDLSRLEDKVREKITLVEEKTKHCDALCVNLAISYGARDEIIRAAKRVI----EKK----LE-- 153 (225)
T ss_dssp HHHHHSTTTTEEEEEESCGGGSCHHHHHHHHHHHHHHTTCCSEEEEEEEEECHHHHHHHHHHHHH----HTT----CC--
T ss_pred HHHHHHHHCCcEEEEEeChHhCCHHHHHHHHHHHHHhcCCCCcEEEEeeCCCCHHHHHHHHHHHH----Hhc----Cc--
Confidence 11 3321 1345699999999999999999999999999983 344 33
Q ss_pred ccccHHHHHHHHHhcCCCCCCCcEEEEeCCCcccCCCchhhhhhheEEecCCC-CCCCHHHHHHHHHHHhhhhhccCC
Q 022957 179 KIFTEAHMSEALRAVGCKGPEPDLLLVYGPVRCHLGFPAWRIRYTEIVHMGRL-KSMRYGSLLKAIYKFTMVRQNYGK 255 (289)
Q Consensus 179 ~~i~e~~l~~~L~~~~~~~pdPDLlIrtGg~~rLsgFlpWQiryTEi~~~~~~-p~f~~~df~~AL~~Y~~rerRfGk 255 (289)
++|+.++++|++ . |||||+||||||.|||||||||++||||||++++ |||++.+|.+||.+||+|+||||+
T Consensus 154 --I~e~~i~~~L~t--~--PdpDLlIRTsGE~RLSnFLLWQ~aYsElyF~d~lWPdF~~~~l~~Ai~~y~~R~RRfG~ 225 (225)
T 3ugs_B 154 --LNEENLTQNLDL--P--LDVDLMLRVGNAKRLSNFLLWQCSYAEIYFSETLFPSLTKREFKRIIKEFRNRERTFGK 225 (225)
T ss_dssp --CSHHHHHHTSSS--C--SCCSEEEEESSCCSCTTSSTTTTTTCEEEEECSCSTTCCHHHHHHHHHHHHHSCCCTTC
T ss_pred --CCHHHHHHhcCC--C--CCCCEEEEeCCcccccCcchhhhhceEEEECCCCCccCCHHHHHHHHHHHHhhhccCCC
Confidence 899999999984 3 9999999999999999999999999999999996 999999999999999999999996
No 8
>2vg0_A Short-chain Z-isoprenyl diphosphate synthetase; peptidoglycan synthesis, cell WALL biogenesis/degradation, secreted, cell shape; HET: GPP; 1.7A {Mycobacterium tuberculosis} PDB: 2vfw_A* 2vg1_A*
Probab=100.00 E-value=3.1e-53 Score=381.32 Aligned_cols=182 Identities=18% Similarity=0.298 Sum_probs=155.4
Q ss_pred CCCCeEEEEEcCCCC---------------CChHHHHHHHHHHHhcCCCEEEEEee-CCCCCcChHH---HHHHhhhc--
Q 022957 65 DKLRYLAIVIESEEA---------------YHIPAVIQLLQWLVDIGVKHVCLYDA-EGILKKSKES---ILGKLNNA-- 123 (289)
Q Consensus 65 ~~P~HlaVImdgn~~---------------~g~~~v~~i~~Wc~~~GI~~LTlYd~-sg~lKr~~~~---L~~~l~~~-- 123 (289)
++|+|||||||||+| .|++++++++.||.++||++||||+| ++||||+.++ ||+++...
T Consensus 1 ~iP~HvAiImDGN~RwA~~~g~l~~~~GH~~G~~~l~~i~~~c~~~GI~~lTlYaFSteN~kRp~~Ev~~Lm~l~~~~l~ 80 (227)
T 2vg0_A 1 DLPRHIAVLCDGNRRWARSAGYDDVSYGYRMGAAKIAEMLRWCHEAGIELATVYLLSTENLQRDPDELAALIEIITDVVE 80 (227)
T ss_dssp CCCSEEEEECCCHHHHHHHTTCSCTHHHHHHHHHHHHHHHHHHHHHTCSEEEEEEEETGGGGSCHHHHHHHHHHHHHHHH
T ss_pred CCCcEEEEEecCChHHHHHcCCCchhHHHHHHHHHHHHHHHHHHHcCCCEEEEEeecccccCCCHHHHHHHHHHHHHHHH
Confidence 579999999999972 27899999999999999999999999 5999999864 66655321
Q ss_pred ------CC-----------CCch------hhhhhccCCCceEEEEEeCCCcHHHHHHHHHHHHHHHHHcCCCCccccccc
Q 022957 124 ------TL-----------FEEA------GESNLLLDHKHITLEFASFPDGKEAVAKAANLLFMKYVKLGGSGKIQEEKI 180 (289)
Q Consensus 124 ------~~-----------~~~~------~~~~~t~~~~~l~l~l~s~ydGR~eIv~a~r~l~~~~~~~~~~~~~di~~~ 180 (289)
++ +|.. .++..|+++++++|++|++||||+||++|+|++++++ +.|++++++....
T Consensus 81 ~~~~~~~~vrv~~iG~~~~lp~~~~~~i~~~~~~T~~n~~l~lnia~~YggR~eI~~A~r~l~~~v-~~g~l~~~~~~~~ 159 (227)
T 2vg0_A 81 EICAPANHWSVRTVGDLGLIGEEPARRLRGAVESTPEVASFHVNVAVGYGGRREIVDAVRALLSKE-LANGATAEELVDA 159 (227)
T ss_dssp HHTCTTTCCEEEEESCGGGSCHHHHHHHHHHHHTSCSSCSCEEEEEEEECHHHHHHHHHHHHHHHH-HHTTCCHHHHHHH
T ss_pred HHhccccCeEEEecCChhhCCHHHHHHHHHHHHHhcCCCceEEEEEecCCCHHHHHHHHHHHHHHH-HcCCCChhHhhcc
Confidence 11 2221 1235689999999999999999999999999999885 6778877752222
Q ss_pred ccHHHHHHHHHhcCCCCCCCcEEEEeCCCcccCCCchhhhhhheEEecCCC-CCCCHHHHHHHHHHHhhh
Q 022957 181 FTEAHMSEALRAVGCKGPEPDLLLVYGPVRCHLGFPAWRIRYTEIVHMGRL-KSMRYGSLLKAIYKFTMV 249 (289)
Q Consensus 181 i~e~~l~~~L~~~~~~~pdPDLlIrtGg~~rLsgFlpWQiryTEi~~~~~~-p~f~~~df~~AL~~Y~~r 249 (289)
++++.|+++|++ .++|||||+|||||+.|||||||||++||||||++++ |+|++.+|.+||.+||+|
T Consensus 160 I~e~~i~~~L~t--~~~pdpDLlIRTsGe~RLSnFLlWQ~aysElyf~~~lWPdF~~~~~~~Al~~y~~R 227 (227)
T 2vg0_A 160 VTVEGISENLYT--SGQPDPDLVIRTSGEQRLSGFLLWQSAYSEMWFTEAHWPAFRHVDFLRALRDYSAR 227 (227)
T ss_dssp CCHHHHHHHSTT--TTSCCCSEEEECTTCCCCTTTTTTTTTTCEEEECSSCGGGCCHHHHHHHHHHHHHC
T ss_pred CCHHHHHHhhcc--CCCCCCcEEEEcCCCccccCcchHHHcCeEEEECCCCCCCCCHHHHHHHHHHHhcC
Confidence 688999999984 7899999999999999999999999999999999985 999999999999999986
No 9
>1xho_A Chorismate mutase; southeast collaboratory for structural genomics, secsg, protein structure initiative, PSI, structural genomics; 2.20A {Clostridium thermocellum} SCOP: d.79.1.2
Probab=54.37 E-value=15 Score=30.27 Aligned_cols=33 Identities=6% Similarity=0.041 Sum_probs=28.7
Q ss_pred EEeCCCcHHHHHHHHHHHHHHHHHcCCCCcccc
Q 022957 145 FASFPDGKEAVAKAANLLFMKYVKLGGSGKIQE 177 (289)
Q Consensus 145 l~s~ydGR~eIv~a~r~l~~~~~~~~~~~~~di 177 (289)
+....+.+++|.+|+++|.+++.+.+++.++||
T Consensus 39 tTve~Nt~e~I~~At~ELl~eii~~N~l~~eDI 71 (148)
T 1xho_A 39 TTVSDNTADEIVAETQKLLKEMAEKNGLEEDDI 71 (148)
T ss_dssp EECSSSSHHHHHHHHHHHHHHHHHHTTCCGGGE
T ss_pred eEcCCCCHHHHHHHHHHHHHHHHHHcCCCHHHE
Confidence 445689999999999999999988888988874
No 10
>1dbf_A Protein (chorismate mutase); shikimate pathway, isomerase; 1.30A {Bacillus subtilis} SCOP: d.79.1.2 PDB: 1com_A 2chs_A 2cht_A* 1fnj_A 1fnk_A
Probab=46.81 E-value=18 Score=29.08 Aligned_cols=32 Identities=13% Similarity=0.097 Sum_probs=27.5
Q ss_pred EeCCCcHHHHHHHHHHHHHHHHHcCCCCcccc
Q 022957 146 ASFPDGKEAVAKAANLLFMKYVKLGGSGKIQE 177 (289)
Q Consensus 146 ~s~ydGR~eIv~a~r~l~~~~~~~~~~~~~di 177 (289)
....+.+++|.+|+++|.+++.+.+++.++||
T Consensus 11 tv~~Nt~e~I~~at~eLl~~i~~~N~l~~~dI 42 (127)
T 1dbf_A 11 TVERDTEEEILQKTKQLLEKIIEENHTKPEDV 42 (127)
T ss_dssp ECSSCCHHHHHHHHHHHHHHHHHHHCCCGGGE
T ss_pred ecCCCCHHHHHHHHHHHHHHHHHHcCCCHHHE
Confidence 34678999999999999999888888888874
No 11
>3ngx_A Bifunctional protein fold; methylenetetrahydrofolate dehydrogenase/cyclohydrolase; 2.30A {Thermoplasma acidophilum} PDB: 3ngl_A
Probab=44.36 E-value=63 Score=29.07 Aligned_cols=53 Identities=9% Similarity=0.057 Sum_probs=39.9
Q ss_pred CCCCeEEEEEcCCCCCChHHHHHHHHHHHhcCCCEEEEEeeCCCCCcChHHHHHHhh
Q 022957 65 DKLRYLAIVIESEEAYHIPAVIQLLQWLVDIGVKHVCLYDAEGILKKSKESILGKLN 121 (289)
Q Consensus 65 ~~P~HlaVImdgn~~~g~~~v~~i~~Wc~~~GI~~LTlYd~sg~lKr~~~~L~~~l~ 121 (289)
..+++||+|+-|++..+..-++.-...|.+.|| ...|.+.+.. +.++|.+.+.
T Consensus 25 ~~~P~Lavilvg~dpaS~~Yv~~k~k~~~~~Gi--~~~~~lp~~~--s~~ell~~I~ 77 (276)
T 3ngx_A 25 GLEPSLKLIQIGDNEAASIYARAKIRRGKKIGI--AVDLEKYDDI--SMKDLLKRID 77 (276)
T ss_dssp TCCCEEEEEEESCCHHHHHHHHHHHHHHHHHTC--EEEEEEESSC--CHHHHHHHHH
T ss_pred CCCCcEEEEEeCCCHHHHHHHHHHHHHHHHCCe--EEEEECCCCC--CHHHHHHHHH
Confidence 566799999999986566678888999999999 6677775443 3556665554
No 12
>1ufy_A Chorismate mutase; shikimate pathway, mutant, riken structur genomics/proteomics initiative, RSGI, structural genomics,; HET: MES; 0.96A {Thermus thermophilus} SCOP: d.79.1.2 PDB: 1ode_A* 1ui9_A*
Probab=44.15 E-value=21 Score=28.40 Aligned_cols=32 Identities=22% Similarity=0.237 Sum_probs=27.2
Q ss_pred EeCCCcHHHHHHHHHHHHHHHHHcCCCCc-ccc
Q 022957 146 ASFPDGKEAVAKAANLLFMKYVKLGGSGK-IQE 177 (289)
Q Consensus 146 ~s~ydGR~eIv~a~r~l~~~~~~~~~~~~-~di 177 (289)
....+.+++|.+|+++|.+++.+.+++++ +|+
T Consensus 10 tv~~n~~e~I~~at~eLl~~i~~~N~l~~~~di 42 (122)
T 1ufy_A 10 TVEEDTPEAIHQATRELLLKMLEANGIQSYEEL 42 (122)
T ss_dssp ECSSSSHHHHHHHHHHHHHHHHHHHTCCCGGGE
T ss_pred ecCCCCHHHHHHHHHHHHHHHHHhcCCCChHhE
Confidence 34678999999999999999888888888 774
No 13
>3pzj_A Probable acetyltransferases; MCSG, PSI-2, structural genomics, protein structure initiati midwest center for structural genomics; HET: MSE; 1.85A {Chromobacterium violaceum}
Probab=31.41 E-value=92 Score=24.82 Aligned_cols=41 Identities=15% Similarity=0.058 Sum_probs=31.1
Q ss_pred eEEEE-EcCCCCC---ChHHHHHHHHHHHhcCCCEEEEEeeCCCC
Q 022957 69 YLAIV-IESEEAY---HIPAVIQLLQWLVDIGVKHVCLYDAEGIL 109 (289)
Q Consensus 69 HlaVI-mdgn~~~---g~~~v~~i~~Wc~~~GI~~LTlYd~sg~l 109 (289)
+|+++ ++.+-++ |.+-+..++.||.+.|++.|.+....+|.
T Consensus 121 ei~~~~v~~~~~g~Gig~~ll~~l~~~a~~~g~~~i~l~v~~~N~ 165 (209)
T 3pzj_A 121 EIGHVNFSPALRRTRLATEAVFLLLKTAFELGYRRCEWRCDSRNA 165 (209)
T ss_dssp EEEEEEECTTTTTSHHHHHHHHHHHHHHHHTTCSEEEEEEETTCH
T ss_pred EEEEEEECHHHhcCCHHHHHHHHHHHHHHHcCCcEEEEeecCCCH
Confidence 45554 5544332 66778999999999999999999888764
No 14
>2p6v_A Transcription initiation factor TFIID subunit 4; alpha helix; HET: MLY; 2.00A {Homo sapiens} SCOP: a.277.1.1
Probab=30.91 E-value=31 Score=27.07 Aligned_cols=48 Identities=19% Similarity=0.169 Sum_probs=32.6
Q ss_pred EEeCCCcHHHHHHHHHHHHHHHHHcCCCCcccccccccHHHHHHHHHhcCCCCCCCcE
Q 022957 145 FASFPDGKEAVAKAANLLFMKYVKLGGSGKIQEEKIFTEAHMSEALRAVGCKGPEPDL 202 (289)
Q Consensus 145 l~s~ydGR~eIv~a~r~l~~~~~~~~~~~~~di~~~i~e~~l~~~L~~~~~~~pdPDL 202 (289)
+++.+-+-.|+.+-+|.|...+. .|+ ++.+++.+.|+.....-|-|.|
T Consensus 32 las~~~~spev~~~Vr~LVq~Ll-~~~---------i~~EeFt~~Lq~~lns~pqP~L 79 (114)
T 2p6v_A 32 LASSGXQSTETAANVXELVQNLL-DGX---------IEAEDFTSRLYRELNSSPQPYL 79 (114)
T ss_dssp HHTSSSSCHHHHHHHHHHHHHHH-TTS---------SCHHHHHHHHHHHTTCCCCTTH
T ss_pred HHhccccChHHHHHHHHHHHHHH-Hcc---------CCHHHHHHHHHHHHcCCCCcch
Confidence 33444577899999999988763 344 5666788777765455566655
No 15
>2pfu_A Biopolymer transport EXBD protein; TONB system, proton motive force, periplasmic domain; NMR {Escherichia coli}
Probab=28.62 E-value=53 Score=23.79 Aligned_cols=23 Identities=13% Similarity=0.258 Sum_probs=20.6
Q ss_pred ChHHHHHHHHHHHhcCCCEEEEE
Q 022957 81 HIPAVIQLLQWLVDIGVKHVCLY 103 (289)
Q Consensus 81 g~~~v~~i~~Wc~~~GI~~LTlY 103 (289)
-+..+.+++..|..+|+..++|=
T Consensus 69 ~y~~vv~vmd~l~~aG~~~v~l~ 91 (99)
T 2pfu_A 69 DYETLMKVMDTLHQAGYLKIGLV 91 (99)
T ss_dssp CHHHHHHHHHHHHHTCCCCEECT
T ss_pred CHHHHHHHHHHHHHcCCCeEEEE
Confidence 68999999999999999998873
No 16
>2h7b_A Core-binding factor, ML1-ETO; helix bundle, transcription; NMR {Homo sapiens} SCOP: a.277.1.1 PDB: 2pp4_A 2knh_A
Probab=27.37 E-value=72 Score=24.64 Aligned_cols=41 Identities=12% Similarity=0.105 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHHHHcCCCCcccccccccHHHHHHHHHhcCCCCCCCcE
Q 022957 152 KEAVAKAANLLFMKYVKLGGSGKIQEEKIFTEAHMSEALRAVGCKGPEPDL 202 (289)
Q Consensus 152 R~eIv~a~r~l~~~~~~~~~~~~~di~~~i~e~~l~~~L~~~~~~~pdPDL 202 (289)
-.|+.+-+|+|...+. .|+ ++.+++...|+.....-|-|.|
T Consensus 24 ~pev~~~Vr~LVq~Ll-~~~---------i~~EeFt~~Lq~~lns~pqP~l 64 (105)
T 2h7b_A 24 SPEIGERVRTLVLGLV-NST---------LTIEEFHSKLQEATNFPLRPFV 64 (105)
T ss_dssp CHHHHHHHHHHHHHHH-TSS---------CCHHHHHHHHHHHSSSSCCSSS
T ss_pred ChHHHHHHHHHHHHHH-hCC---------CCHHHHHHHHHHHhcCCCCcch
Confidence 4678888999888763 343 5667788888764444455544
No 17
>2j8m_A Acetyltransferase PA4866 from P. aeruginosa; GCN5 family, phosphinothricin, methionine sulfone, methionine sulfoximine; 1.44A {Pseudomonas aeruginosa} PDB: 2bl1_A 2j8n_A 2j8r_A* 1yvo_A
Probab=26.55 E-value=1.3e+02 Score=22.92 Aligned_cols=38 Identities=8% Similarity=0.123 Sum_probs=29.2
Q ss_pred EEEEcCCCCC---ChHHHHHHHHHHHhcCCCEEEEEeeCCC
Q 022957 71 AIVIESEEAY---HIPAVIQLLQWLVDIGVKHVCLYDAEGI 108 (289)
Q Consensus 71 aVImdgn~~~---g~~~v~~i~~Wc~~~GI~~LTlYd~sg~ 108 (289)
++.++.+-++ |-.-+..++.||.+.|+..|.++...+|
T Consensus 87 ~~~V~p~~rg~Gig~~ll~~~~~~a~~~g~~~i~l~v~~~N 127 (172)
T 2j8m_A 87 SVYVRDDQRGKGLGVQLLQALIERARAQGLHVMVAAIESGN 127 (172)
T ss_dssp EEEECTTCTTSSHHHHHHHHHHHHHHHTTCCEEEEEEETTC
T ss_pred EEEEChhhcCCCHHHHHHHHHHHHHHHCCccEEEEEEcCCC
Confidence 4555554332 5677889999999999999999988775
No 18
>1eij_A Hypothetical protein MTH1615; beta-helix, structural genomics, PSI, protein structure initiative; NMR {Methanothermobacterthermautotrophicus} SCOP: a.5.6.1
Probab=25.06 E-value=1.1e+02 Score=22.29 Aligned_cols=38 Identities=16% Similarity=0.341 Sum_probs=30.8
Q ss_pred cHHHHHHHHHHHHHHHHHcCCCCcccccccccHHHHHHHHHhc
Q 022957 151 GKEAVAKAANLLFMKYVKLGGSGKIQEEKIFTEAHMSEALRAV 193 (289)
Q Consensus 151 GR~eIv~a~r~l~~~~~~~~~~~~~di~~~i~e~~l~~~L~~~ 193 (289)
.|+|.++++....-.+++.|.+... ++|+.+-+.|..+
T Consensus 31 vKPe~A~~VE~~Li~lAq~Gqi~~k-----i~e~~L~~lL~~i 68 (80)
T 1eij_A 31 TRPDFVEQIELQLIQLAQMGRVRSK-----ITDEQLKELLKRV 68 (80)
T ss_dssp TCHHHHHHHHHHHHHHHHCCSSCCC-----CCHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHHcCCCCCC-----cCHHHHHHHHHHH
Confidence 4788899998877778899987443 8999999998864
No 19
>3eo4_A Uncharacterized protein MJ1062; APC60792.2,MJ_1062,methanocaldococcus jannaschii DSM 2661, S genomics, PSI-2; HET: MES PG6; 2.19A {Methanocaldococcus jannaschii}
Probab=24.75 E-value=1.6e+02 Score=21.95 Aligned_cols=42 Identities=24% Similarity=0.200 Sum_probs=32.0
Q ss_pred CeEEEEEcC-CCCC---ChHHHHHHHHHHHhcCCCEEEEEeeCCCC
Q 022957 68 RYLAIVIES-EEAY---HIPAVIQLLQWLVDIGVKHVCLYDAEGIL 109 (289)
Q Consensus 68 ~HlaVImdg-n~~~---g~~~v~~i~~Wc~~~GI~~LTlYd~sg~l 109 (289)
..+++.++. +-++ |..-+..++.|+...|++.|.+....+|-
T Consensus 91 ~~i~~~v~~~~~rg~Gig~~ll~~~~~~a~~~g~~~i~l~v~~~N~ 136 (164)
T 3eo4_A 91 PEIGILIGEFFLWGKHIGRHSVSLVLKWLKNIGYKKAHARILENNI 136 (164)
T ss_dssp CEEEEEECSTTSTTSSHHHHHHHHHHHHHHHTTCCEEEEEEETTCH
T ss_pred EEEEEEEcCHHHcCccHHHHHHHHHHHHHHhCCCcEEEEEeCCCCH
Confidence 466666665 4332 56778899999999999999999887763
No 20
>2ge3_A Probable acetyltransferase; structural GEN PSI, protein structure initiative, midwest center for struc genomics, MCSG; HET: ACO; 2.25A {Agrobacterium tumefaciens} SCOP: d.108.1.1
Probab=24.61 E-value=1e+02 Score=23.26 Aligned_cols=39 Identities=10% Similarity=-0.039 Sum_probs=29.2
Q ss_pred EEEEcCCCC--C-ChHHHHHHHHHHHhcCCCEEEEEeeCCCC
Q 022957 71 AIVIESEEA--Y-HIPAVIQLLQWLVDIGVKHVCLYDAEGIL 109 (289)
Q Consensus 71 aVImdgn~~--~-g~~~v~~i~~Wc~~~GI~~LTlYd~sg~l 109 (289)
++.++.+-+ | |..-+..++.||.+.|++.|.++...+|.
T Consensus 90 ~~~v~p~~rg~Gig~~ll~~~~~~a~~~g~~~i~l~v~~~N~ 131 (170)
T 2ge3_A 90 GMGILPAYRNKGLGARLMRRTLDAAHEFGLHRIELSVHADNA 131 (170)
T ss_dssp EEEECGGGTTSSHHHHHHHHHHHHHHHHTCCEEEEEEETTCH
T ss_pred EEEECHHHhCCCHHHHHHHHHHHHHHHCCceEEEEEEEcCCH
Confidence 444544322 2 56778899999999999999999888763
No 21
>2kix_A BM2 protein; channel, transport protein; NMR {Influenza b virus}
Probab=23.84 E-value=1.1e+02 Score=18.22 Aligned_cols=21 Identities=24% Similarity=0.287 Sum_probs=16.9
Q ss_pred HhhHHHHHHHHHHHHHHHHHH
Q 022957 11 YSWACQIGNLGLWIIWLLIHF 31 (289)
Q Consensus 11 ~~~~~~~~~~~~~ll~~liH~ 31 (289)
.+..++|-+.+|...|++=|+
T Consensus 8 lsi~sfilsalhf~awtighl 28 (33)
T 2kix_A 8 LSISSFILSALHFIAWTIGHL 28 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 456678888899999998885
No 22
>2fh0_A Hypothetical 16.0 kDa protein in ABF2-CHL12 intergenic region; ensemble, YMR074CP, unknown function; NMR {Saccharomyces cerevisiae}
Probab=23.14 E-value=1.2e+02 Score=22.36 Aligned_cols=37 Identities=19% Similarity=0.253 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHHHHHcCCCCcccccccccHHHHHHHHHhc
Q 022957 152 KEAVAKAANLLFMKYVKLGGSGKIQEEKIFTEAHMSEALRAV 193 (289)
Q Consensus 152 R~eIv~a~r~l~~~~~~~~~~~~~di~~~i~e~~l~~~L~~~ 193 (289)
|+|.++++....-.+++.|.+... ++|+.+-+.|..+
T Consensus 30 KPe~A~~VE~~Li~lAq~Gqi~~k-----i~e~~L~~lL~~i 66 (81)
T 2fh0_A 30 RRDRAQAVETYLKKLIATNNVTHK-----ITEAEIVSILNGI 66 (81)
T ss_dssp CHHHHHHHHHHHHHHHHHTCCSCC-----BCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHcCCCCCC-----cCHHHHHHHHHHH
Confidence 678888888877777899987533 8999998888753
No 23
>1vhs_A Similar to phosphinothricin acetyltransferase; structural genomics, unknown function; 1.80A {Bacillus subtilis} SCOP: d.108.1.1
Probab=21.79 E-value=1e+02 Score=23.82 Aligned_cols=29 Identities=7% Similarity=0.030 Sum_probs=24.5
Q ss_pred ChHHHHHHHHHHHhcCCCEEEEEeeCCCC
Q 022957 81 HIPAVIQLLQWLVDIGVKHVCLYDAEGIL 109 (289)
Q Consensus 81 g~~~v~~i~~Wc~~~GI~~LTlYd~sg~l 109 (289)
|..-+..++.||.+.|++.|.+....+|-
T Consensus 99 G~~ll~~~~~~a~~~g~~~i~l~v~~~N~ 127 (175)
T 1vhs_A 99 GSYLLQEALRIAPNLGIRSLMAFIFGHNK 127 (175)
T ss_dssp HHHHHHHHHHHGGGGTCSEEEEEEETTCH
T ss_pred HHHHHHHHHHHHHhCCceEEEEEEecCCH
Confidence 56678889999999999999999887763
No 24
>2ksn_A Ubiquitin domain-containing protein 2; UBTD2, DC-UBP, signaling protein; NMR {Homo sapiens}
Probab=21.76 E-value=1.3e+02 Score=24.31 Aligned_cols=60 Identities=10% Similarity=0.128 Sum_probs=36.0
Q ss_pred CCCcHHHHHHHHHHHHHHHHHcCCCCcccccccccHHHHHHHHHhcCCCCCCCcEEEEeCCCcccCCCchhh
Q 022957 148 FPDGKEAVAKAANLLFMKYVKLGGSGKIQEEKIFTEAHMSEALRAVGCKGPEPDLLLVYGPVRCHLGFPAWR 219 (289)
Q Consensus 148 ~ydGR~eIv~a~r~l~~~~~~~~~~~~~di~~~i~e~~l~~~L~~~~~~~pdPDLlIrtGg~~rLsgFlpWQ 219 (289)
.|+||.||=+|.|..++-+ +.|.+ -+.. ..|...+-.+|..||-..+--.-.....|-|=
T Consensus 51 ~~~Gr~EIW~ALraA~~~~-e~~Dl--------~tAQ---~IldaAgItvp~gdL~~cYDe~G~~Y~LP~yv 110 (137)
T 2ksn_A 51 AFEGRKEIWDALKAAAHAF-ESNDH--------ELAQ---AIIDGANITLPHGALTECYDELGNRYQLPVYC 110 (137)
T ss_dssp TTCCCHHHHHHHHHHHHHH-HTTCH--------HHHH---HHHHHHSCBCSSCCSSEEEETTTEEEECCGGG
T ss_pred ccCCCHHHHHHHHHHHHHH-hcCCH--------HHHH---HHHHHcCCcccCCcHHHHHhccCCccCCCeeE
Confidence 4999999999999976443 44322 1222 22333356789999988765333344444443
No 25
>3fbu_A Acetyltransferase, GNAT family; structur genomics, PSI2, MCSG, protein structure initiative, midwest for structural genomics; HET: COA; 1.80A {Bacillus anthracis str}
Probab=21.72 E-value=1.4e+02 Score=22.12 Aligned_cols=29 Identities=7% Similarity=-0.099 Sum_probs=24.0
Q ss_pred ChHHHHHHHHHHHhc-CCCEEEEEeeCCCC
Q 022957 81 HIPAVIQLLQWLVDI-GVKHVCLYDAEGIL 109 (289)
Q Consensus 81 g~~~v~~i~~Wc~~~-GI~~LTlYd~sg~l 109 (289)
|..-+..++.||.+. |++.|.+....+|-
T Consensus 100 g~~ll~~~~~~a~~~~~~~~i~l~v~~~N~ 129 (168)
T 3fbu_A 100 ASEAAQATLKYGFKEMKLHRIIATCQPENT 129 (168)
T ss_dssp HHHHHHHHHHHHHHTSCCSEEEEEECTTCH
T ss_pred HHHHHHHHHHHHHhhCCceEEEEEeccCCh
Confidence 566788999999776 99999999887763
No 26
>2jlm_A Putative phosphinothricin N-acetyltransferase; methionine sulfoximine; 2.35A {Acinetobacter baylyi}
Probab=20.63 E-value=1.8e+02 Score=22.49 Aligned_cols=40 Identities=10% Similarity=-0.010 Sum_probs=29.9
Q ss_pred EEEEEcCCCCC---ChHHHHHHHHHHHhcCCCEEEEEeeCCCC
Q 022957 70 LAIVIESEEAY---HIPAVIQLLQWLVDIGVKHVCLYDAEGIL 109 (289)
Q Consensus 70 laVImdgn~~~---g~~~v~~i~~Wc~~~GI~~LTlYd~sg~l 109 (289)
+++.++.+-++ |-+-+..++.||.+.|+..|.+....+|-
T Consensus 94 ~~~~v~p~~rg~Gig~~ll~~~~~~a~~~g~~~i~l~v~~~N~ 136 (182)
T 2jlm_A 94 HSVYIHKDYRGLGLSKHLMNELIKRAVESEVHVMVGCIDATNV 136 (182)
T ss_dssp EEEEECTTSTTSSHHHHHHHHHHHHHHHTTCCEEEEEEETTCH
T ss_pred EEEEEChhhcCCCHHHHHHHHHHHHHHHCCceEEEEEEeCCCH
Confidence 34555554332 56778899999999999999999888763
No 27
>3igr_A Ribosomal-protein-S5-alanine N-acetyltransferase; fisch MCSG, structural genomics, midwest center for structural GE protein structure initiative; HET: MSE; 2.00A {Vibrio fischeri} SCOP: d.108.1.0
Probab=20.35 E-value=1.4e+02 Score=22.40 Aligned_cols=41 Identities=12% Similarity=0.057 Sum_probs=29.4
Q ss_pred eEEEEEcCCCCC---ChHHHHHHHHHH-HhcCCCEEEEEeeCCCC
Q 022957 69 YLAIVIESEEAY---HIPAVIQLLQWL-VDIGVKHVCLYDAEGIL 109 (289)
Q Consensus 69 HlaVImdgn~~~---g~~~v~~i~~Wc-~~~GI~~LTlYd~sg~l 109 (289)
.+++.++.+-++ |..-+..++.|+ ...|++.|.+....+|-
T Consensus 98 ~i~~~v~~~~rg~Gig~~ll~~~~~~a~~~~g~~~i~~~v~~~N~ 142 (184)
T 3igr_A 98 HVGYSLDSEYQGKGIMRRAVNVTIDWMFKAQNLHRIMAAYIPRNE 142 (184)
T ss_dssp EEEEEECGGGTTSSHHHHHHHHHHHHHHHTSCCSEEEEEECTTCH
T ss_pred EEEEEEChhhccCcHHHHHHHHHHHHHHhhCCceEEEEEecCCCH
Confidence 445455443222 567788999999 77899999999887763
No 28
>3f8k_A Protein acetyltransferase; GCN5-related N-acetyltransferase; HET: COA; 1.84A {Sulfolobus solfataricus P2}
Probab=20.26 E-value=1.5e+02 Score=21.80 Aligned_cols=28 Identities=18% Similarity=0.111 Sum_probs=23.2
Q ss_pred ChHHHHHHHHHHHhcCCCEEEEEeeCCC
Q 022957 81 HIPAVIQLLQWLVDIGVKHVCLYDAEGI 108 (289)
Q Consensus 81 g~~~v~~i~~Wc~~~GI~~LTlYd~sg~ 108 (289)
|..-+..++.|+.+.|++.+.+....+|
T Consensus 91 g~~ll~~~~~~~~~~g~~~i~l~~~~~N 118 (160)
T 3f8k_A 91 GTLLVKTLIEEAKKSGLSTVKFYTLPEN 118 (160)
T ss_dssp HHHHHHHHHHHHHHTTCSEEEEEECTTC
T ss_pred HHHHHHHHHHHHHHcCceEEEEEEcccC
Confidence 5567888999999999999999877655
Done!