Query 022958
Match_columns 289
No_of_seqs 164 out of 1417
Neff 8.7
Searched_HMMs 46136
Date Fri Mar 29 07:24:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022958.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/022958hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3090 Prohibitin-like protei 100.0 1.2E-50 2.5E-55 329.6 25.6 286 1-286 1-286 (290)
2 PRK11029 FtsH protease regulat 100.0 5.9E-44 1.3E-48 319.1 28.9 253 25-283 7-329 (334)
3 TIGR01932 hflC HflC protein. H 100.0 1.1E-43 2.5E-48 318.2 29.2 251 24-280 6-316 (317)
4 PRK10930 FtsH protease regulat 100.0 2.8E-40 6E-45 303.0 30.0 240 24-273 83-346 (419)
5 cd03401 Band_7_prohibitin Band 100.0 1.5E-40 3.4E-45 279.7 23.5 194 37-231 1-195 (196)
6 cd03405 Band_7_HflC Band_7_Hfl 100.0 1.7E-39 3.6E-44 282.2 25.4 216 38-256 1-240 (242)
7 TIGR01933 hflK HflK protein. H 100.0 3.1E-39 6.8E-44 283.3 27.4 236 38-282 1-260 (261)
8 KOG3083 Prohibitin [Posttransl 100.0 1.6E-40 3.6E-45 270.1 17.0 258 22-279 11-270 (271)
9 cd03404 Band_7_HflK Band_7_Hfl 100.0 2.1E-37 4.5E-42 272.5 26.3 226 26-257 3-265 (266)
10 cd03407 Band_7_4 A subgroup of 100.0 4.5E-37 9.7E-42 269.4 26.4 224 43-273 1-250 (262)
11 cd03403 Band_7_stomatin_like B 100.0 4E-35 8.7E-40 250.3 24.5 210 41-273 1-215 (215)
12 cd03406 Band_7_3 A subgroup of 100.0 6E-35 1.3E-39 255.2 24.5 199 34-234 1-209 (280)
13 COG0330 HflC Membrane protease 100.0 5.8E-32 1.3E-36 241.0 27.0 238 25-273 8-277 (291)
14 KOG2621 Prohibitins and stomat 100.0 8.3E-34 1.8E-38 239.3 13.1 235 21-277 38-277 (288)
15 cd03402 Band_7_2 A subgroup of 100.0 3.6E-30 7.9E-35 218.9 19.9 161 37-203 1-169 (219)
16 PF01145 Band_7: SPFH domain / 100.0 1.2E-29 2.6E-34 209.9 10.7 162 39-204 1-167 (179)
17 smart00244 PHB prohibitin homo 100.0 3.7E-28 8E-33 197.5 16.0 156 36-197 1-159 (160)
18 KOG2620 Prohibitins and stomat 100.0 7.4E-29 1.6E-33 206.9 8.7 187 36-231 5-197 (301)
19 KOG2962 Prohibitin-related mem 99.9 1.1E-22 2.5E-27 166.9 22.7 171 24-195 9-184 (322)
20 cd03400 Band_7_1 A subgroup of 99.8 1.7E-20 3.7E-25 146.3 13.1 120 78-197 3-123 (124)
21 cd03408 Band_7_5 A subgroup of 99.8 1E-19 2.2E-24 154.3 15.2 160 33-196 11-205 (207)
22 COG2268 Uncharacterized protei 99.8 2.9E-18 6.3E-23 159.4 20.2 167 29-195 25-212 (548)
23 KOG2668 Flotillins [Intracellu 99.7 5.7E-15 1.2E-19 128.4 23.0 153 38-194 2-164 (428)
24 cd03399 Band_7_flotillin Band_ 99.7 8.2E-17 1.8E-21 126.2 10.3 115 78-194 2-124 (128)
25 cd02106 Band_7 The band 7 doma 99.5 7.6E-14 1.6E-18 107.3 12.0 105 90-197 15-120 (121)
26 PF13421 Band_7_1: SPFH domain 99.4 1.2E-11 2.7E-16 104.5 16.2 161 34-196 12-205 (211)
27 COG4260 Membrane protease subu 98.9 9.6E-08 2.1E-12 81.8 14.2 159 35-195 38-231 (345)
28 PTZ00491 major vault protein; 98.3 0.00022 4.7E-09 70.4 20.9 155 39-194 465-649 (850)
29 PF12127 YdfA_immunity: SigmaW 97.7 0.00045 9.7E-09 59.4 11.0 175 78-261 120-311 (316)
30 PRK13665 hypothetical protein; 97.4 0.002 4.4E-08 55.2 10.9 109 78-195 125-235 (316)
31 COG1580 FliL Flagellar basal b 97.1 0.026 5.7E-07 45.5 13.7 80 96-185 76-157 (159)
32 PRK12785 fliL flagellar basal 95.5 0.81 1.8E-05 37.2 13.7 52 131-184 110-163 (166)
33 COG4864 Uncharacterized protei 93.6 0.74 1.6E-05 38.8 9.1 94 92-194 139-233 (328)
34 PRK06654 fliL flagellar basal 93.5 3.2 6.9E-05 34.1 12.7 77 95-183 99-175 (181)
35 cd03404 Band_7_HflK Band_7_Hfl 93.4 0.72 1.6E-05 40.4 9.5 102 161-263 143-248 (266)
36 cd03405 Band_7_HflC Band_7_Hfl 93.3 0.57 1.2E-05 40.4 8.7 80 160-240 120-201 (242)
37 PF11978 MVP_shoulder: Shoulde 92.2 0.64 1.4E-05 35.2 6.3 96 91-186 11-116 (118)
38 PRK07021 fliL flagellar basal 91.8 4.5 9.7E-05 32.7 11.6 54 131-184 102-159 (162)
39 PRK11029 FtsH protease regulat 91.7 1.4 3.1E-05 40.0 9.3 84 178-261 202-287 (334)
40 TIGR01932 hflC HflC protein. H 91.3 1.8 3.8E-05 39.2 9.5 56 208-263 224-279 (317)
41 PF03748 FliL: Flagellar basal 88.0 8.3 0.00018 27.9 9.9 52 131-184 43-96 (99)
42 PRK08455 fliL flagellar basal 87.1 16 0.00034 30.2 13.5 51 131-183 126-178 (182)
43 cd03407 Band_7_4 A subgroup of 86.0 4.9 0.00011 35.1 8.4 29 211-239 163-191 (262)
44 TIGR01933 hflK HflK protein. H 85.8 5.7 0.00012 34.6 8.7 62 178-239 134-197 (261)
45 PRK07718 fliL flagellar basal 83.9 14 0.00031 29.1 9.4 52 131-184 86-139 (142)
46 PRK05697 flagellar basal body- 81.7 23 0.0005 27.8 9.9 54 131-184 77-134 (137)
47 PLN03086 PRLI-interacting fact 81.6 2 4.4E-05 41.7 4.3 45 224-273 55-99 (567)
48 COG2268 Uncharacterized protei 79.3 14 0.0003 35.8 9.0 48 213-260 421-472 (548)
49 PRK05696 fliL flagellar basal 78.4 35 0.00075 27.7 13.2 54 131-184 110-167 (170)
50 cd03403 Band_7_stomatin_like B 73.5 12 0.00025 31.4 6.4 71 155-233 115-186 (215)
51 PRK10930 FtsH protease regulat 64.6 24 0.00052 33.2 6.9 9 178-186 230-238 (419)
52 PRK06568 F0F1 ATP synthase sub 60.8 86 0.0019 25.1 10.2 16 146-161 28-44 (154)
53 PTZ00399 cysteinyl-tRNA-synthe 60.3 98 0.0021 31.0 10.6 38 161-198 519-561 (651)
54 PRK01558 V-type ATP synthase s 58.4 73 0.0016 26.6 8.2 7 267-273 122-128 (198)
55 COG0330 HflC Membrane protease 57.1 57 0.0012 28.8 7.8 75 156-231 145-224 (291)
56 cd03401 Band_7_prohibitin Band 53.4 40 0.00086 27.7 5.8 20 219-238 172-191 (196)
57 PRK04057 30S ribosomal protein 51.8 1.1E+02 0.0023 25.8 8.0 83 89-182 100-184 (203)
58 KOG0742 AAA+-type ATPase [Post 50.4 1.3E+02 0.0027 28.6 8.8 24 207-230 205-228 (630)
59 PRK14472 F0F1 ATP synthase sub 49.4 95 0.0021 25.2 7.4 18 146-163 42-60 (175)
60 PRK08475 F0F1 ATP synthase sub 48.7 1E+02 0.0022 24.9 7.4 19 145-163 45-64 (167)
61 cd03406 Band_7_3 A subgroup of 48.4 1.6E+02 0.0035 26.1 9.0 17 240-256 257-273 (280)
62 PRK13460 F0F1 ATP synthase sub 47.9 1E+02 0.0023 24.9 7.3 19 145-163 39-58 (173)
63 PF08114 PMP1_2: ATPase proteo 47.3 29 0.00063 21.0 2.8 11 6-16 1-11 (43)
64 CHL00019 atpF ATP synthase CF0 47.2 1.1E+02 0.0023 25.1 7.4 20 145-164 47-67 (184)
65 CHL00118 atpG ATP synthase CF0 44.8 1.3E+02 0.0028 23.9 7.3 18 146-163 46-64 (156)
66 PRK13461 F0F1 ATP synthase sub 44.4 1.3E+02 0.0029 23.8 7.4 19 145-163 28-47 (159)
67 PRK07352 F0F1 ATP synthase sub 44.0 1.3E+02 0.0028 24.3 7.4 19 144-162 41-60 (174)
68 PRK13455 F0F1 ATP synthase sub 43.4 1.3E+02 0.0028 24.6 7.3 18 147-164 52-70 (184)
69 PRK05759 F0F1 ATP synthase sub 43.0 1.4E+02 0.0031 23.4 7.3 9 146-154 28-36 (156)
70 PRK01005 V-type ATP synthase s 42.9 1.7E+02 0.0037 24.7 8.0 17 241-257 106-122 (207)
71 PRK13453 F0F1 ATP synthase sub 42.9 1.4E+02 0.003 24.2 7.3 19 145-163 41-60 (173)
72 PRK14474 F0F1 ATP synthase sub 42.0 1.3E+02 0.0028 26.2 7.4 20 145-164 28-48 (250)
73 PRK09173 F0F1 ATP synthase sub 41.5 1.8E+02 0.0039 23.1 9.8 15 147-161 27-42 (159)
74 PRK14473 F0F1 ATP synthase sub 41.4 1.5E+02 0.0033 23.6 7.3 20 145-164 31-51 (164)
75 TIGR03321 alt_F1F0_F0_B altern 40.5 1.4E+02 0.003 25.8 7.4 20 145-164 28-48 (246)
76 PRK07353 F0F1 ATP synthase sub 39.9 1.7E+02 0.0038 22.5 7.3 16 146-161 29-45 (140)
77 PRK14475 F0F1 ATP synthase sub 39.8 1.7E+02 0.0036 23.6 7.3 18 147-164 35-53 (167)
78 PRK01005 V-type ATP synthase s 39.5 2.3E+02 0.005 23.9 9.6 15 212-226 45-59 (207)
79 PF13179 DUF4006: Family of un 38.7 22 0.00048 24.1 1.6 15 1-16 1-15 (66)
80 PRK13454 F0F1 ATP synthase sub 38.7 1.7E+02 0.0037 23.9 7.3 16 146-161 55-71 (181)
81 PRK06231 F0F1 ATP synthase sub 37.6 2.5E+02 0.0053 23.6 9.9 18 146-163 72-90 (205)
82 PRK15322 invasion protein OrgB 36.5 1.3E+02 0.0028 25.3 6.0 10 264-273 111-120 (210)
83 TIGR01144 ATP_synt_b ATP synth 36.2 2.1E+02 0.0045 22.3 7.3 6 147-152 20-25 (147)
84 PRK09174 F0F1 ATP synthase sub 31.5 3.1E+02 0.0068 23.0 9.7 19 146-164 77-96 (204)
85 KOG4753 Predicted membrane pro 29.2 1E+02 0.0022 23.5 3.9 41 22-65 59-99 (124)
86 PF01015 Ribosomal_S3Ae: Ribos 27.4 2.4E+02 0.0051 23.6 6.3 79 90-182 107-185 (194)
87 PF11190 DUF2976: Protein of u 27.3 27 0.00058 25.2 0.6 32 3-35 50-81 (87)
88 PRK13428 F0F1 ATP synthase sub 27.1 5.5E+02 0.012 24.4 10.2 18 146-163 25-43 (445)
89 PF03179 V-ATPase_G: Vacuolar 25.5 1.8E+02 0.0039 21.3 4.9 9 212-220 32-40 (105)
90 PF06188 HrpE: HrpE/YscL/FliH 25.4 2.1E+02 0.0046 23.7 5.7 18 206-223 42-59 (191)
91 PRK12613 galactose-6-phosphate 24.9 58 0.0013 25.7 2.1 35 159-194 12-46 (141)
92 PRK14471 F0F1 ATP synthase sub 24.5 3.6E+02 0.0079 21.4 10.2 19 146-164 32-51 (164)
93 PF06188 HrpE: HrpE/YscL/FliH 24.2 3.6E+02 0.0078 22.3 6.9 7 267-273 134-140 (191)
94 PF10717 ODV-E18: Occlusion-de 23.8 93 0.002 22.1 2.7 9 63-71 59-67 (85)
95 KOG2007 Cysteinyl-tRNA synthet 23.7 4.5E+02 0.0097 25.6 7.9 8 171-178 506-513 (586)
96 PRK08476 F0F1 ATP synthase sub 23.6 3.6E+02 0.0077 21.0 7.0 18 146-163 31-49 (141)
97 KOG2668 Flotillins [Intracellu 23.6 1.7E+02 0.0038 26.8 5.1 25 249-273 356-384 (428)
98 PHA01972 structural protein 23.0 8.6E+02 0.019 25.2 10.6 41 132-172 3-44 (828)
99 PTZ00491 major vault protein; 22.8 3.8E+02 0.0082 27.7 7.7 28 211-238 718-745 (850)
100 KOG4737 ATPase membrane sector 22.1 1E+02 0.0022 27.1 3.3 37 16-53 282-318 (326)
101 COG0711 AtpF F0F1-type ATP syn 21.8 4.2E+02 0.0091 21.2 7.8 49 188-238 29-81 (161)
No 1
>KOG3090 consensus Prohibitin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.2e-50 Score=329.59 Aligned_cols=286 Identities=76% Similarity=1.120 Sum_probs=276.7
Q ss_pred CCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHhhcccEEEecCCeEEEEEccccCccceeeCCcceEEccccCccEEEee
Q 022958 1 MNFNNVKVPKVPGGGAASALIKVGIIGGIGLYAAANSLYNVEGGHRAIMFNRITGVKDKVYPEGTHLMVPWFERPVIYDV 80 (289)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~V~~g~~gVv~~r~gg~~~~~~~pG~~~~~P~~~~v~~~~~ 80 (289)
|++++-+.|.++|..+++..+.+++++.+++.....++|.|+.||++++++|+||....++..|.||.+||+++.+.||+
T Consensus 1 ~~~~~~~~~~~pg~~~~~~~l~~~~~~G~~~y~v~~sl~nVdgGHRAI~fnRi~Gik~~iy~EGtHf~iPwfe~pIiYDv 80 (290)
T KOG3090|consen 1 MLMKLGKVPNIPGPRGAGAGLKLLLIGGLGAYGVTQSLYNVDGGHRAIVFNRIGGIKDDIYPEGTHFRIPWFERPIIYDV 80 (290)
T ss_pred CchhccCCCCCCCcchHHHHHHHHHHhchhhheecceeEeecCCceEEEEeccccchhccccCCceEeeeccccceeeee
Confidence 77888899999999887777777788888889999999999999999999999999999999999999999999999999
Q ss_pred eeeeeeeeecccccCCcEEEEEEEEEeecCCCCHHHHHHHhCccccccccchHHHHHHHHHHhhcChhHHhhhHHHHHHH
Q 022958 81 RARPHLVESTSGSRDLQMVKIGLRVLTRPVADKLPTVYRALGENYNERVLPSIIHETLKAVVAQYNASQLITQRETVSRE 160 (289)
Q Consensus 81 ~~~~~~~~~~~~T~D~~~v~v~~~v~y~i~~~~~~~~~~~~g~~~~~~~l~~~~~~~lr~~~~~~~~~ei~~~R~~i~~~ 160 (289)
+.+++.+.+...|+|-+.|++...|--|++.+.++.+|+++|.+|.++.+-+++.+.|+.++++|+..+++++|+..+..
T Consensus 81 RarP~~i~S~tGskDLQmVnI~lRVLsRP~~~~Lp~iyrtLG~~y~ERVLPSIinEvLKaVVAqfNASqLITQRe~VSrl 160 (290)
T KOG3090|consen 81 RARPRLISSPTGSKDLQMVNIGLRVLSRPMADQLPEIYRTLGQNYDERVLPSIINEVLKAVVAQFNASQLITQREQVSRL 160 (290)
T ss_pred ccCcccccCCCCCcceeEEEeeeEEecCCChhhhHHHHHHhccCcchhhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcCCeEEEEEEeeccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhh
Q 022958 161 IRKILTERAANFNIALDDVSITSLTFGKEFTSAIEAKQVAAQEAERAKYIVEKAEQDKRSAIIRAQGEATSAQLIGQAIA 240 (289)
Q Consensus 161 v~~~l~~~l~~~Gi~v~~v~I~~i~~p~~~~~aie~~~~a~q~~~~a~~~i~~A~aea~~~~~~A~aeaea~~~~~~a~~ 240 (289)
+++.|.++..++.|-+.+|.|+++.|.+++..++|+||+|+|+++||.+.+++|+++++..+++|+|||++++++++|++
T Consensus 161 iRk~L~eRA~~Fni~LDDVSiT~l~F~~efTaAiEaKQvA~QeAqRA~F~VekA~qek~~~ivrAqGEaksAqliGeAi~ 240 (290)
T KOG3090|consen 161 IRKILTERAADFNIALDDVSITELTFGKEFTAAIEAKQVAAQEAQRAKFIVEKAEQEKQSAIVRAQGEAKSAQLIGEAIK 240 (290)
T ss_pred HHHHHHHHHhccceEeecceeeeeecCHHHHHHHHHHHHHHHHHhhhhhhhHHHHHhhhhhhhhhccchHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cChhhHHHHHHHHHHHHHHHhcCCCCEEEEcCCCccccccchhhhc
Q 022958 241 NNPAFITLRKIEAAREIAQTIAHSANKVFLNSDDLLLNLQEMKLEG 286 (289)
Q Consensus 241 ~~p~~~~~~~~e~~~~i~~~~~~~~~~i~l~~~~~~~~~~~~~~~~ 286 (289)
++|.++.+|++++-++|++.+++++|++||++++.++|+..++++.
T Consensus 241 nn~~fi~Lrki~aAr~IA~tia~S~NkvyL~~~~LlLn~q~~~~~~ 286 (290)
T KOG3090|consen 241 NNPAFITLRKIEAAREIAQTIASSANKVYLSSDDLLLNLQDMDLDD 286 (290)
T ss_pred CCccceeehhHHHHHHHHHHHhcCCCeEEecccceeeeehhhcccc
Confidence 9999999999999999999999999999999999999999999874
No 2
>PRK11029 FtsH protease regulator HflC; Provisional
Probab=100.00 E-value=5.9e-44 Score=319.08 Aligned_cols=253 Identities=22% Similarity=0.341 Sum_probs=215.4
Q ss_pred HHHHHHHHhhcccEEEecCCeEEEEEccccCccce------eeCCcceEEccccCccEEEeeeeeeeeeee-cccccCCc
Q 022958 25 IIGGIGLYAAANSLYNVEGGHRAIMFNRITGVKDK------VYPEGTHLMVPWFERPVIYDVRARPHLVES-TSGSRDLQ 97 (289)
Q Consensus 25 v~~~~~~~~~~~~~~~V~~g~~gVv~~r~gg~~~~------~~~pG~~~~~P~~~~v~~~~~~~~~~~~~~-~~~T~D~~ 97 (289)
++++++++++++|+++|++||+||++ |||+..+. +++||+||++||++++..+|++.+.++.+. .+.|+|+.
T Consensus 7 ~~~~~~~~~l~~s~~iV~ege~gVV~-rFGk~~~~~~~~~~~l~PGLhf~iPfid~V~~vdvR~q~~d~~~~~vlT~D~~ 85 (334)
T PRK11029 7 AIIIIVLVVLYMSVFVVKEGERGIVL-RFGKVLRDDDNKPLVYAPGLHFKIPFIETVKMLDARIQTMDNQADRFVTKEKK 85 (334)
T ss_pred HHHHHHHHHHHheEEEECCCeEEEEE-ECCceeccccccccccCCceEEEcCCceEEEEEeeEEEEeeCCCceEEcCCCC
Confidence 34445566778899999999999998 89886543 589999999999999999999999999885 58999999
Q ss_pred EEEEEEEEEeecCCCCHHHHHHHhCc---cccccccchHHHHHHHHHHhhcChhHHhh-hHHHHHHHHHHHHHHH-----
Q 022958 98 MVKIGLRVLTRPVADKLPTVYRALGE---NYNERVLPSIIHETLKAVVAQYNASQLIT-QRETVSREIRKILTER----- 168 (289)
Q Consensus 98 ~v~v~~~v~y~i~~~~~~~~~~~~g~---~~~~~~l~~~~~~~lr~~~~~~~~~ei~~-~R~~i~~~v~~~l~~~----- 168 (289)
.|.+|++++|+| .|+..++.+++. ......|.+.+++++|+++|+++++|+++ +|+++..++++.+++.
T Consensus 86 ~V~VD~~V~yrI--~Dp~~~~~~~~~~n~~~a~~~l~~~v~salR~viG~~tldei~~~~R~~i~~~v~~~l~~~~~~~~ 163 (334)
T PRK11029 86 DLIVDSYIKWRI--SDFSRYYLATGGGDISQAEVLLKRKFSDRLRSEIGRLDVKDIVTDSRGRLTLDVRDALNSGSAGTE 163 (334)
T ss_pred EEEEEEEEEEEE--CCHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHcccCHHHHHHhhHHHHHHHHHHHHHHhhhccc
Confidence 999999999995 778887776542 23446788999999999999999999997 7999999999999854
Q ss_pred ----------------------------------hhcCCeEEEEEEeeccccCHHHHHHHHHHHHHHHHHHH----H---
Q 022958 169 ----------------------------------AANFNIALDDVSITSLTFGKEFTSAIEAKQVAAQEAER----A--- 207 (289)
Q Consensus 169 ----------------------------------l~~~Gi~v~~v~I~~i~~p~~~~~aie~~~~a~q~~~~----a--- 207 (289)
+.+|||+|.+|.|++++||+++.++|++++.++++... +
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GI~V~~V~i~~i~~P~~v~~ai~~~~~Aere~~a~~~~aege 243 (334)
T PRK11029 164 DEVATPAADDAIASAAERVEAETKGKVPVINPNSMAALGIEVVDVRIKQINLPTEVSDAIYNRMRAEREAVARRHRSQGQ 243 (334)
T ss_pred ccccccccccccccchhhcccccccccccccccccccCCcEEEEEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46899999999999999999999999888887776541 1
Q ss_pred ------------HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcChhhHHH-HHHHHHHHHHHHhcCCCCEEEEcCCC
Q 022958 208 ------------KYIVEKAEQDKRSAIIRAQGEATSAQLIGQAIANNPAFITL-RKIEAAREIAQTIAHSANKVFLNSDD 274 (289)
Q Consensus 208 ------------~~~i~~A~aea~~~~~~A~aeaea~~~~~~a~~~~p~~~~~-~~~e~~~~i~~~~~~~~~~i~l~~~~ 274 (289)
+.....|++++++++++|+|||+|+++++++|.++|+++.+ +++|+++++. .+++++++||+++
T Consensus 244 ~~a~~~~a~A~~e~~~~~AeA~~~a~i~~aegeA~a~~~~~~a~~~~p~~~~~~~~lea~~~~~---~~~~~~~vl~~~~ 320 (334)
T PRK11029 244 EEAEKLRATADYEVTRTLAEAERQGRIMRGEGDAEAAKLFADAFSQDPDFYAFIRSLRAYENSF---SGNQDVMVLSPDS 320 (334)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHh---cCCCcEEEECCCh
Confidence 11334588888999999999999999999999999999986 9999999954 3556789999999
Q ss_pred ccccccchh
Q 022958 275 LLLNLQEMK 283 (289)
Q Consensus 275 ~~~~~~~~~ 283 (289)
.+|++...+
T Consensus 321 ~~~~~l~~~ 329 (334)
T PRK11029 321 DFFRYMKTP 329 (334)
T ss_pred HHHHHhhcc
Confidence 999887533
No 3
>TIGR01932 hflC HflC protein. HflK and HflC are paralogs encoded by tandem genes in Proteobacteria, spirochetes, and some other bacterial lineages. The HflKC complex is anchored in the membrane and exposed to the periplasm. The complex is not active as a protease, but rather binds to and appears to modulate the ATP-dependent protease FtsH. The overall function of HflKC is not fully described.//Regulation of FtsH protease appears to be negative (PubMed:8947034, PubMed:96367)
Probab=100.00 E-value=1.1e-43 Score=318.18 Aligned_cols=251 Identities=18% Similarity=0.323 Sum_probs=212.0
Q ss_pred HHHHHHHHHhhcccEEEecCCeEEEEEccccCccce------eeCCcceEEccccCccEEEeeeeeeeeeee-cccccCC
Q 022958 24 GIIGGIGLYAAANSLYNVEGGHRAIMFNRITGVKDK------VYPEGTHLMVPWFERPVIYDVRARPHLVES-TSGSRDL 96 (289)
Q Consensus 24 ~v~~~~~~~~~~~~~~~V~~g~~gVv~~r~gg~~~~------~~~pG~~~~~P~~~~v~~~~~~~~~~~~~~-~~~T~D~ 96 (289)
+++++++++++++|+++|++||+||++ +||+..+. +++||+||++||++++..+|++.+.++.+. .+.|+|+
T Consensus 6 ~~~~~~~~~~l~~~~~iV~~ge~gVv~-~fGk~~~~~~~~~~v~~pGlhf~~P~i~~v~~vd~r~q~~~~~~~~vlTkD~ 84 (317)
T TIGR01932 6 IVVIVLLIVVLFQPFFIIKEGERGIIT-RFGKILKDNNHHVLVYEPGLHFKIPFIEHVKIFDAKIQTMDGRPDRIPTKEK 84 (317)
T ss_pred HHHHHHHHHHHHheEEEECCCeEEEEE-ecCceeccccccccccCCCeEEEeccccEEEEeeeeEEEecCCcceeECCCC
Confidence 334444566778899999999999997 89876543 458999999999999999999999998865 5899999
Q ss_pred cEEEEEEEEEeecCCCCHHHHHHHhC---ccccccccchHHHHHHHHHHhhcChhHHhh-hHHHH---------------
Q 022958 97 QMVKIGLRVLTRPVADKLPTVYRALG---ENYNERVLPSIIHETLKAVVAQYNASQLIT-QRETV--------------- 157 (289)
Q Consensus 97 ~~v~v~~~v~y~i~~~~~~~~~~~~g---~~~~~~~l~~~~~~~lr~~~~~~~~~ei~~-~R~~i--------------- 157 (289)
+++.++++++||| +++..+|.++| .++.+..|.+.+++++|+++|+++++|+++ +|+++
T Consensus 85 ~~V~Vd~~V~yrV--~d~~~~~~~~~~~~~~~~~~~l~~~~~~~lR~vig~~tl~eil~~~r~~i~~~~~~~~~~~~~~~ 162 (317)
T TIGR01932 85 KDIIIDTYIRWRI--EDFKKYYLSTGGGTISAAEVLIKRKIDDRLRSEIGVLGLKEIVRSSNDQLDTLVSKLALNRGGKI 162 (317)
T ss_pred CEEEEEEEEEEEE--CCHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHccCcHHHHHhcchHHhhhhhchhhccccccc
Confidence 9999999999995 68888888877 335677899999999999999999999996 45555
Q ss_pred --------------HHHHHHHHHHHhhcCCeEEEEEEeeccccCHHHHHHHHHHHHHHHHHHH-----------------
Q 022958 158 --------------SREIRKILTERAANFNIALDDVSITSLTFGKEFTSAIEAKQVAAQEAER----------------- 206 (289)
Q Consensus 158 --------------~~~v~~~l~~~l~~~Gi~v~~v~I~~i~~p~~~~~aie~~~~a~q~~~~----------------- 206 (289)
...+.+.+...+.+||++|.+|.|++++||+++.++++++..++++...
T Consensus 163 ~~~~~~~~~~r~~l~~~i~~~~~~~~~~~Gi~V~~V~I~~i~~p~~v~~Ai~~~~~aere~~a~~~r~ege~~a~~i~a~ 242 (317)
T TIGR01932 163 NKIAMTITKGREILAREISQIANSQLKDIGIEVVDVRIKKINYSDELSESIYNRMRSEREQIARMHRSQGEEKAEEILGK 242 (317)
T ss_pred cccccccchhhhhHHHHHHHHHHHHHhcCCcEEEEEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677888888999999999999999999999999999877777654311
Q ss_pred --HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcChhhHHH-HHHHHHHHHHHHhcCCCCEEEEcCCCcccccc
Q 022958 207 --AKYIVEKAEQDKRSAIIRAQGEATSAQLIGQAIANNPAFITL-RKIEAAREIAQTIAHSANKVFLNSDDLLLNLQ 280 (289)
Q Consensus 207 --a~~~i~~A~aea~~~~~~A~aeaea~~~~~~a~~~~p~~~~~-~~~e~~~~i~~~~~~~~~~i~l~~~~~~~~~~ 280 (289)
++.....|+|++++.+++|+|||+++++++++|.++|+++++ +++|+++++. .++++++++++++++|++.
T Consensus 243 A~~e~~~~~aeA~a~a~~~~Aegea~a~~~~~~a~~~~p~~~~~~~~le~~~~~~---~~~~~~~vl~~~~~~~~~~ 316 (317)
T TIGR01932 243 AEYEVRKILSEAYRTARIIKGEGDAEAAKIYSDAYGKDPEFYSFWRSLEAYEKSF---KDNQDEKVLSTDSEFFQYM 316 (317)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHh---CCCCCEEEECCCcHHHHhh
Confidence 112345677788899999999999999999999999999985 9999999954 3666789999999999875
No 4
>PRK10930 FtsH protease regulator HflK; Provisional
Probab=100.00 E-value=2.8e-40 Score=303.02 Aligned_cols=240 Identities=18% Similarity=0.259 Sum_probs=200.6
Q ss_pred HHHHHHHHHhhcccEEEecCCeEEEEEccccCccceeeCCcceEEccccCccEEEeeeeeeeee-eecccccCCcEEEEE
Q 022958 24 GIIGGIGLYAAANSLYNVEGGHRAIMFNRITGVKDKVYPEGTHLMVPWFERPVIYDVRARPHLV-ESTSGSRDLQMVKIG 102 (289)
Q Consensus 24 ~v~~~~~~~~~~~~~~~V~~g~~gVv~~r~gg~~~~~~~pG~~~~~P~~~~v~~~~~~~~~~~~-~~~~~T~D~~~v~v~ 102 (289)
+++++++++|+++|+++|+++|+||++ |||+. ..+++||+||++||+++|..+|++.+.... +..+.|+|++.|+|+
T Consensus 83 ii~~~~v~i~l~sg~yiV~e~E~gVV~-rFGk~-~~~l~PGLhfk~PfId~V~~vdv~~~~~~~~~~~mLT~D~n~V~Vd 160 (419)
T PRK10930 83 IAAAAVVIIWAASGFYTIKEAERGVVT-RFGKF-SHLVEPGLNWKPTFIDEVKPVNVEAVRELAASGVMLTSDENVVRVE 160 (419)
T ss_pred HHHHHHHHHHHHheEEEECCCeEEEEE-ECCcC-cceeCCceEEecCceEEEEEEEeEEEEEccCcceeECCCCCEEEEE
Confidence 445556667888999999999999998 99665 579999999999999999999997754332 235899999999999
Q ss_pred EEEEeecCCCCHHHHHHHhCccccccccchHHHHHHHHHHhhcChhHHhh-hHHHHHHHHHHHHHHHhhcC--CeEEEEE
Q 022958 103 LRVLTRPVADKLPTVYRALGENYNERVLPSIIHETLKAVVAQYNASQLIT-QRETVSREIRKILTERAANF--NIALDDV 179 (289)
Q Consensus 103 ~~v~y~i~~~~~~~~~~~~g~~~~~~~l~~~~~~~lr~~~~~~~~~ei~~-~R~~i~~~v~~~l~~~l~~~--Gi~v~~v 179 (289)
++|+||| .|+..++. +..+.+..|.+.+++++|+++++++++++++ +|++|..++.+.|++.++.| ||+|.+|
T Consensus 161 ~~VqYrI--~Dp~~~lf--~v~~~~~~L~~~~~SAlR~vIG~~tldevLt~~R~~I~~~i~~~l~e~l~~y~~GI~V~~V 236 (419)
T PRK10930 161 MNVQYRV--TDPEKYLF--SVTSPDDSLRQATDSALRGVIGKYTMDRILTEGRTVIRSDTQRELEETIRPYDMGITLLDV 236 (419)
T ss_pred EEEEEEE--CCHHHHHH--hccCHHHHHHHHHHHHHHHHHccCCHHHHhhccHHHHHHHHHHHHHHHHhhcCCCeEEEEE
Confidence 9999995 67776664 3456778899999999999999999999997 69999999999999999986 9999999
Q ss_pred EeeccccCHHHHHHHHHHHHHHHHHHH-------------------HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhh
Q 022958 180 SITSLTFGKEFTSAIEAKQVAAQEAER-------------------AKYIVEKAEQDKRSAIIRAQGEATSAQLIGQAIA 240 (289)
Q Consensus 180 ~I~~i~~p~~~~~aie~~~~a~q~~~~-------------------a~~~i~~A~aea~~~~~~A~aeaea~~~~~~a~~ 240 (289)
.|++++||+++++|+++...|+++.++ ++..+..|++++++.+++|+|||+++..+.++|.
T Consensus 237 ~I~di~pP~eV~~Af~~v~~Are~~~~~i~eAeayan~iip~A~gea~~ii~~AeAyr~~~i~~AeGda~rF~~i~~~Y~ 316 (419)
T PRK10930 237 NFQAARPPEEVKAAFDDAIAARENEQQYIREAEAYTNEVQPRANGQAQRILEEARAYKAQTILEAQGEVARFAKLLPEYK 316 (419)
T ss_pred EEeecCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHh
Confidence 999999999999999876666654322 1224667899999999999999988665556999
Q ss_pred cChhhHHH-HHHHHHHHHHHHhcCCCCEEEEcCC
Q 022958 241 NNPAFITL-RKIEAAREIAQTIAHSANKVFLNSD 273 (289)
Q Consensus 241 ~~p~~~~~-~~~e~~~~i~~~~~~~~~~i~l~~~ 273 (289)
++|++.+. .|||+++++- ++.++++++.+
T Consensus 317 kaP~vtr~RlYletme~vl----~~~~kvivd~~ 346 (419)
T PRK10930 317 AAPEITRERLYIETMEKVL----GHTRKVLVNDK 346 (419)
T ss_pred hCHHHHHHHHHHHHHHHHH----ccCCEEEEeCC
Confidence 99999985 9999999954 34566777765
No 5
>cd03401 Band_7_prohibitin Band_7_prohibitin. A subgroup of the band 7 domain of flotillin (reggie) like proteins. This subgroup group includes proteins similar to prohibitin (a lipid raft-associated integral membrane protein). Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. These microdomains in addition to being stable scaffolds may also be also dynamic units with their own regulatory functions. Prohibitin is a mitochondrial inner-membrane protein which may act as a chaperone for the stabilization of mitochondrial proteins. Human prohibitin forms a heter-oligomeric complex with Bap-37 (prohibitin 2, a band 7 domain carrying homologue). This complex may protect non-assembled membrane proteins against proteolysis by the m-AAA protease. Prohibitin and Bap-37 yeast homologues have been implicated in yeast longevity and, in the maintenance of mitochondrial morphology.
Probab=100.00 E-value=1.5e-40 Score=279.74 Aligned_cols=194 Identities=66% Similarity=1.015 Sum_probs=184.2
Q ss_pred cEEEecCCeEEEEEccccCccc-eeeCCcceEEccccCccEEEeeeeeeeeeeecccccCCcEEEEEEEEEeecCCCCHH
Q 022958 37 SLYNVEGGHRAIMFNRITGVKD-KVYPEGTHLMVPWFERPVIYDVRARPHLVESTSGSRDLQMVKIGLRVLTRPVADKLP 115 (289)
Q Consensus 37 ~~~~V~~g~~gVv~~r~gg~~~-~~~~pG~~~~~P~~~~v~~~~~~~~~~~~~~~~~T~D~~~v~v~~~v~y~i~~~~~~ 115 (289)
|+++|++|++||++ +|||... .+++||+||++||+++++.+|++.+.+++.....|+|++.|++++++.|++.++++.
T Consensus 1 ~~~~V~~g~~gVv~-~~g~~~~~~~~~pG~h~~~P~~~~v~~~~~r~~~~~~~~~~~t~d~~~V~v~~~v~y~v~~~~~~ 79 (196)
T cd03401 1 SLYNVDGGHRAVLF-NRGGGVKDLVYGEGLHFRIPWFQKPIIFDVRARPRNIESTTGSKDLQMVNITLRVLFRPDASQLP 79 (196)
T ss_pred CEEEECCCcEEEEE-EecCccccCccCCceEEEccccceeEEEEeeeeEEEEeecccCCCCeEEEEEEEEEEEeCHHHHH
Confidence 68999999999998 7877544 499999999999999999999999999888888999999999999999999888888
Q ss_pred HHHHHhCccccccccchHHHHHHHHHHhhcChhHHhhhHHHHHHHHHHHHHHHhhcCCeEEEEEEeeccccCHHHHHHHH
Q 022958 116 TVYRALGENYNERVLPSIIHETLKAVVAQYNASQLITQRETVSREIRKILTERAANFNIALDDVSITSLTFGKEFTSAIE 195 (289)
Q Consensus 116 ~~~~~~g~~~~~~~l~~~~~~~lr~~~~~~~~~ei~~~R~~i~~~v~~~l~~~l~~~Gi~v~~v~I~~i~~p~~~~~aie 195 (289)
.+|..+|.++.+..|.+.+++.+|+++++|+++|++++|++|+..+.+.+++.+.+|||+|.++.|++|+||+++.++|+
T Consensus 80 ~~~~~~~~~~~~~~i~~~v~~~lR~vi~~~~~~ei~~~R~~i~~~i~~~l~~~l~~~Gi~i~~v~i~~i~~p~~~~~ai~ 159 (196)
T cd03401 80 RIYQNLGEDYDERVLPSIINEVLKAVVAQFTAEELITQREEVSALIREALTERAKDFGIILDDVSITHLTFSKEFTKAVE 159 (196)
T ss_pred HHHHHhCcchHhhhhcHHHHHHHHHHHccCCHHHHHhhHHHHHHHHHHHHHHHHHhCCeEEEEEEEEeccCCHHHHHHHH
Confidence 99999987777888999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 022958 196 AKQVAAQEAERAKYIVEKAEQDKRSAIIRAQGEATS 231 (289)
Q Consensus 196 ~~~~a~q~~~~a~~~i~~A~aea~~~~~~A~aeaea 231 (289)
+++.|+|++++++.++.+|++++++++++|+|||+|
T Consensus 160 ~k~~a~q~~~~a~~~~~~a~~ea~~~~~~A~gea~a 195 (196)
T cd03401 160 AKQVAQQEAERAKFVVEKAEQEKQAAVIRAEGEAEA 195 (196)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhc
Confidence 999999999999999999999999999999999987
No 6
>cd03405 Band_7_HflC Band_7_HflC: The band 7 domain of flotillin (reggie) like proteins. This group includes proteins similar to prokaryotic HlfC (High frequency of lysogenization C). Although many members of the band 7 family are lipid raft associated, prokaryote plasma membranes lack cholesterol and are unlikely to have lipid raft domains. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Escherichia coli HflC is an integral membrane protein which may localize to the plasma membrane. HflC associates with another band 7 family member (HflK) to form an HflKC complex. HflKC interacts with FtsH in a large complex termed the FtsH holo-enzyme. FtsH is an AAA ATP-dependent protease which exerts progressive proteolysis against membrane-embedded and soluble substrate proteins. HflKC can modulate the activity of FtsH. HflKC plays a role in the decision between lysogenic and lytic cycle growth during la
Probab=100.00 E-value=1.7e-39 Score=282.15 Aligned_cols=216 Identities=24% Similarity=0.365 Sum_probs=191.1
Q ss_pred EEEecCCeEEEEEccccCccceeeCCcceEEccccCccEEEeeeeeeeeeee-cccccCCcEEEEEEEEEeecCCCCHHH
Q 022958 38 LYNVEGGHRAIMFNRITGVKDKVYPEGTHLMVPWFERPVIYDVRARPHLVES-TSGSRDLQMVKIGLRVLTRPVADKLPT 116 (289)
Q Consensus 38 ~~~V~~g~~gVv~~r~gg~~~~~~~pG~~~~~P~~~~v~~~~~~~~~~~~~~-~~~T~D~~~v~v~~~v~y~i~~~~~~~ 116 (289)
+++|++||+||++ +||+..+.+++||+||++||+++++.+|++.+.++.+. .+.|+|++++++++++.||| .|+..
T Consensus 1 ~~iV~~ge~~Vv~-~~Gk~~~~~~~pG~~~~~P~i~~v~~v~~r~~~~~~~~~~v~T~D~~~v~v~~~v~yrI--~d~~~ 77 (242)
T cd03405 1 LFIVDEGEQAVVL-RFGEVVRVVTEPGLHFKLPFIQQVKKFDKRILTLDSDPQRVLTKDKKRLIVDAYAKWRI--TDPLR 77 (242)
T ss_pred CEEeCCCeEEEEE-EcCccccccCCCCeeEEcCCcceEEEEcCEEEeccCCcceEEccCCcEEEEEEEEEEEE--cCHHH
Confidence 5799999999998 89877666899999999999999999999999888754 58999999999999999995 67888
Q ss_pred HHHHhCcc--ccccccchHHHHHHHHHHhhcChhHHhhh-HHHHHHHHHHHHHHHhhcCCeEEEEEEeeccccCHHHHHH
Q 022958 117 VYRALGEN--YNERVLPSIIHETLKAVVAQYNASQLITQ-RETVSREIRKILTERAANFNIALDDVSITSLTFGKEFTSA 193 (289)
Q Consensus 117 ~~~~~g~~--~~~~~l~~~~~~~lr~~~~~~~~~ei~~~-R~~i~~~v~~~l~~~l~~~Gi~v~~v~I~~i~~p~~~~~a 193 (289)
+|.+++.. ..+..|.+.+++.+|+++++++++|++++ |++|++.+.+.|++.+++||++|.++.|++|+||+++.++
T Consensus 78 ~~~~~~~~~~~~~~~i~~~~~~~lr~vi~~~~~~el~~~~R~~i~~~i~~~l~~~l~~~Gi~i~~v~i~~i~~p~~i~~a 157 (242)
T cd03405 78 FYQAVGGEERAAETRLDQIVNSALRAEFGKRTLIELVSGERGELMEEIRRAVAEEAKELGIEVVDVRIKRIDLPEEVSES 157 (242)
T ss_pred HHHHhcChHHHHHHHHHHHHHHHHHHHHccCCHHHHHHhHHHHHHHHHHHHHHHHHHccCcEEEEEEEEeccCCHHHHHH
Confidence 88887742 23478999999999999999999999987 9999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHH-------------------HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcChhhHHH-HHHHH
Q 022958 194 IEAKQVAAQEAERA-------------------KYIVEKAEQDKRSAIIRAQGEATSAQLIGQAIANNPAFITL-RKIEA 253 (289)
Q Consensus 194 ie~~~~a~q~~~~a-------------------~~~i~~A~aea~~~~~~A~aeaea~~~~~~a~~~~p~~~~~-~~~e~ 253 (289)
|+++..++++...+ +..+..|++++++.+++|+|||+++++++++|+++|+++.+ +++++
T Consensus 158 i~~~~~ae~~~~a~~~~ae~~~~a~~~~aea~~~~~~~~Aea~a~a~~~~a~gea~a~~~~~~a~~~~p~~~~~~~~l~~ 237 (242)
T cd03405 158 VYRRMRAERERIAAEFRAEGEEEAERIRADADRERTVILAEAYREAQEIRGEGDAEAARIYAEAYGKDPEFYAFYRSLEA 237 (242)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 97766655533211 23567899999999999999999999999999999999995 99999
Q ss_pred HHH
Q 022958 254 ARE 256 (289)
Q Consensus 254 ~~~ 256 (289)
++.
T Consensus 238 ~~~ 240 (242)
T cd03405 238 YRN 240 (242)
T ss_pred HHh
Confidence 875
No 7
>TIGR01933 hflK HflK protein. HflK and HflC are paralogs encoded by tandem genes in Proteobacteria, spirochetes, and some other bacterial lineages. The HflKC complex is anchored in the membrane and exposed to the periplasm. The complex is not active as a protease, but rather binds to and appears to modulate the ATP-dependent protease FtsH. The overall function of HflKC is not fully described.//Regulation of FtsH by HflKC appears to be negative (PubMed:8947034,PubMed:96367)
Probab=100.00 E-value=3.1e-39 Score=283.33 Aligned_cols=236 Identities=18% Similarity=0.243 Sum_probs=200.3
Q ss_pred EEEecCCeEEEEEccccCccceeeCCcceEEccccCccEEEeeeeeeeeee-ecccccCCcEEEEEEEEEeecCCCCHHH
Q 022958 38 LYNVEGGHRAIMFNRITGVKDKVYPEGTHLMVPWFERPVIYDVRARPHLVE-STSGSRDLQMVKIGLRVLTRPVADKLPT 116 (289)
Q Consensus 38 ~~~V~~g~~gVv~~r~gg~~~~~~~pG~~~~~P~~~~v~~~~~~~~~~~~~-~~~~T~D~~~v~v~~~v~y~i~~~~~~~ 116 (289)
+++|++||.||++ +||+ ..++++||+||++||+++++.+|++.+....+ ..+.|+|++.+.++++++||| .|+..
T Consensus 1 ~~iV~~ge~~Vv~-~fGk-~~~~l~pGl~~~~P~i~~v~~~~~~~~~~~~~~~~v~T~D~~~v~vd~~v~yrI--~d~~~ 76 (261)
T TIGR01933 1 IYTIGEAERGVVL-RFGK-YHRTVDPGLNWKPPFIEEVYPVNVTAVRNLRKQGLMLTGDENIVNVEMNVQYRI--TDPYK 76 (261)
T ss_pred CEEeCCCeEEEEE-EcCc-cccccCCcceEECCCceEEEEeeeEEEEecCCcCeEEeCCCCEEEEEEEEEEEE--CCHHH
Confidence 5899999999998 8975 45689999999999999999999976432222 247899999999999999996 56666
Q ss_pred HHHHhCccccccccchHHHHHHHHHHhhcChhHHhh-hHHHHHHHHHHHHHHHhhcC--CeEEEEEEeeccccCHHHHHH
Q 022958 117 VYRALGENYNERVLPSIIHETLKAVVAQYNASQLIT-QRETVSREIRKILTERAANF--NIALDDVSITSLTFGKEFTSA 193 (289)
Q Consensus 117 ~~~~~g~~~~~~~l~~~~~~~lr~~~~~~~~~ei~~-~R~~i~~~v~~~l~~~l~~~--Gi~v~~v~I~~i~~p~~~~~a 193 (289)
++. +.++.+..+.+.+++++|+++++++++++++ +|++|++.+.+.+++.++.| ||+|.+|.|++++||+++.++
T Consensus 77 ~~~--~~~~~~~~l~~~~~s~lR~vig~~~l~eil~~~R~~i~~~i~~~l~~~~~~~~~GI~V~~v~I~~i~~p~~v~~a 154 (261)
T TIGR01933 77 YLF--SVENPEDSLRQATDSALRGVIGDSTMDDILTEGRSQIREDTKERLNEIIDNYDLGITVTDVNFQSARPPEEVKEA 154 (261)
T ss_pred HHH--hCCCHHHHHHHHHHHHHHHHHhhCcHHHHHHhCHHHHHHHHHHHHHHHHhhhcCCcEEEEEEEEecCCCHHHHHH
Confidence 554 4566778899999999999999999999998 89999999999999999865 999999999999999999999
Q ss_pred HHHHHHHHHHHHHH-------------------HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcChhhHHH-HHHHH
Q 022958 194 IEAKQVAAQEAERA-------------------KYIVEKAEQDKRSAIIRAQGEATSAQLIGQAIANNPAFITL-RKIEA 253 (289)
Q Consensus 194 ie~~~~a~q~~~~a-------------------~~~i~~A~aea~~~~~~A~aeaea~~~~~~a~~~~p~~~~~-~~~e~ 253 (289)
|++++.++|+.+++ +..+..|++++++++++|+|||+++++++++|.++|+++.+ +++|+
T Consensus 155 ~~~~~~a~q~~~~~~~~ae~~~~~~~~~a~~~a~~~~~~Aea~~~~~~~~a~g~a~~~~~~~~ay~~~p~~~~~~~~le~ 234 (261)
T TIGR01933 155 FDDVIIAREDEERYINEAEAYANEVVPKARGDAQRIIEEARGYKERRINRAKGDVARFTKLLAEYKKAPDVTRERLYLET 234 (261)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhChHHHHHHHHHHH
Confidence 98888877655432 12356788888899999999999999999999999999986 99999
Q ss_pred HHHHHHHhcCCCCEEEEcCCCccccccch
Q 022958 254 AREIAQTIAHSANKVFLNSDDLLLNLQEM 282 (289)
Q Consensus 254 ~~~i~~~~~~~~~~i~l~~~~~~~~~~~~ 282 (289)
++++. ++.++++++++++++|.+-+.
T Consensus 235 ~~~~~---~~~~~~~~~~~~~~~~~~~~~ 260 (261)
T TIGR01933 235 MEKVL---SNTRKVLLDDKKGNNLLYLPL 260 (261)
T ss_pred HHHHH---ccCCeEEEECCCCCeeeeecC
Confidence 99854 466667889898887776553
No 8
>KOG3083 consensus Prohibitin [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.6e-40 Score=270.10 Aligned_cols=258 Identities=52% Similarity=0.869 Sum_probs=242.8
Q ss_pred HHHHHHHHHHHhhcccEEEecCCeEEEEEccccCccceeeCCcceEEccccCccEEEeeeeeeeeeeecccccCCcEEEE
Q 022958 22 KVGIIGGIGLYAAANSLYNVEGGHRAIMFNRITGVKDKVYPEGTHLMVPWFERPVIYDVRARPHLVESTSGSRDLQMVKI 101 (289)
Q Consensus 22 ~~~v~~~~~~~~~~~~~~~V~~g~~gVv~~r~gg~~~~~~~pG~~~~~P~~~~v~~~~~~~~~~~~~~~~~T~D~~~v~v 101 (289)
-+++.+.++...+-+++|.|+.||++|+++||.|+...+.+.|.||.+||.++.+.||.+.++..++....|+|-+.|++
T Consensus 11 k~gl~l~v~~~~~~s~ly~vdgg~ravifdrf~gv~~~vvgegthflipw~qk~~i~d~rs~p~~v~~itGskdLQ~Vni 90 (271)
T KOG3083|consen 11 KFGLALAVAGGVVNSALYNVDGGHRAVIFDRFRGVQDQVVGEGTHFLIPWVQKPIIFDCRSRPRNVPVITGSKDLQNVNI 90 (271)
T ss_pred ccchhhHHhhhhhhhhhcccCCCceeEEeecccchhhhcccCCceeeeeeccCcEEEeccCCCcccccccCchhhhcccc
Confidence 34455556667788999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEeecCCCCHHHHHHHhCccccccccchHHHHHHHHHHhhcChhHHhhhHHHHHHHHHHHHHHHhhcCCeEEEEEEe
Q 022958 102 GLRVLTRPVADKLPTVYRALGENYNERVLPSIIHETLKAVVAQYNASQLITQRETVSREIRKILTERAANFNIALDDVSI 181 (289)
Q Consensus 102 ~~~v~y~i~~~~~~~~~~~~g~~~~~~~l~~~~~~~lr~~~~~~~~~ei~~~R~~i~~~v~~~l~~~l~~~Gi~v~~v~I 181 (289)
...+.|+...+.++.+|.++|.+|.+..+-++-...|++++++|+..|++++|+-++..+.+.|.++...+|+.+.++.|
T Consensus 91 Tlril~rp~~sqLP~If~~~G~dyDErVLpsI~~eiLKsVVa~FdA~eliTqRe~vS~~v~~~lt~rA~~Fgl~Lddvsi 170 (271)
T KOG3083|consen 91 TLRILFRPVVSQLPCIFTSIGEDYDERVLPSITTEILKSVVARFDAGELITQRELVSRQVSNDLTERAATFGLILDDVSI 170 (271)
T ss_pred eEEEEecccccccchHHHhhcccccccccccchHHHHHHHHHhccccchhhhhHHHHHHHHHHHHHHHHhhCeeechhhh
Confidence 99999999899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcC-hhhHHHHHHHHHHHHHHH
Q 022958 182 TSLTFGKEFTSAIEAKQVAAQEAERAKYIVEKAEQDKRSAIIRAQGEATSAQLIGQAIANN-PAFITLRKIEAAREIAQT 260 (289)
Q Consensus 182 ~~i~~p~~~~~aie~~~~a~q~~~~a~~~i~~A~aea~~~~~~A~aeaea~~~~~~a~~~~-p~~~~~~~~e~~~~i~~~ 260 (289)
.++.+.+++.+++|+||+|+||+||+++.+++|++++++.+|.||||++|+++++.+++.. ..+++++.+|+-+.++..
T Consensus 171 ThltfGkEFt~AvE~KQVAQQEAErarFvVeKAeQqk~aavIsAEGds~aA~li~~sla~aG~gLielrrlEAa~dia~~ 250 (271)
T KOG3083|consen 171 THLTFGKEFTEAVEAKQVAQQEAERARFVVEKAEQQKKAAVISAEGDSKAAELIANSLATAGDGLIELRRLEAAEDIAYQ 250 (271)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhheeecccchHHHHHHHHHHhhcCCceeeehhhhhHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999754 568899999999999999
Q ss_pred hcCCCCEEEEcCCC-ccccc
Q 022958 261 IAHSANKVFLNSDD-LLLNL 279 (289)
Q Consensus 261 ~~~~~~~i~l~~~~-~~~~~ 279 (289)
|+++.|+.|+|.|. .++++
T Consensus 251 Ls~s~nv~YLp~g~s~l~~l 270 (271)
T KOG3083|consen 251 LSRSRNVTYLPAGQSMLLQL 270 (271)
T ss_pred HhcCCCceeccCCcceeccC
Confidence 99999999999874 44443
No 9
>cd03404 Band_7_HflK Band_7_HflK: The band 7 domain of flotillin (reggie) like proteins. This group includes proteins similar to prokaryotic HlfK (High frequency of lysogenization K). Although many members of the band 7 family are lipid raft associated, prokaryote plasma membranes lack cholesterol and are unlikely to have lipid raft domains. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Escherichia coli HflK is an integral membrane protein which may localize to the plasma membrane. HflK associates with another band 7 family member (HflC) to form an HflKC complex. HflKC interacts with FtsH in a large complex termed the FtsH holo-enzyme. FtsH is an AAA ATP-dependent protease which exerts progressive proteolysis against membrane-embedded and soluble substrate proteins. HflKC can modulate the activity of FtsH. HflKC plays a role in the decision between lysogenic and lytic cycle growth during la
Probab=100.00 E-value=2.1e-37 Score=272.54 Aligned_cols=226 Identities=20% Similarity=0.240 Sum_probs=184.6
Q ss_pred HHHHHHHhhcccEEEecCCeEEEEEccccCccceeeCCcceEEccccCccEEEe-eeee----------eeee---eecc
Q 022958 26 IGGIGLYAAANSLYNVEGGHRAIMFNRITGVKDKVYPEGTHLMVPWFERPVIYD-VRAR----------PHLV---ESTS 91 (289)
Q Consensus 26 ~~~~~~~~~~~~~~~V~~g~~gVv~~r~gg~~~~~~~pG~~~~~P~~~~v~~~~-~~~~----------~~~~---~~~~ 91 (289)
+++++++++++|+++|++||+||++ +||+.. .+++||+||++||+++++.++ ++.+ .... ...+
T Consensus 3 ~~~~~~~~~~~s~~~V~~ge~gVV~-~fGk~~-~~~~pGlh~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 80 (266)
T cd03404 3 AALLVILWLLSGFYIVQPGERGVVL-RFGKYS-RTVEPGLHWKLPYPIEVVEVVPVFQLRSVGIPVRVGSVRSVPGESLM 80 (266)
T ss_pred HHHHHHHHHHcEEEEECCCceEEeE-EcCccc-cccCCceeEecCCCcEEEEEecceeEEeeccccccccccCCCcccce
Confidence 4455567778899999999999997 897765 799999999999998876443 3211 1111 1247
Q ss_pred cccCCcEEEEEEEEEeecCCCCHHHHHHHhCccccccccchHHHHHHHHHHhhcChhHHhhh-HHHHHHHHHHHHHHHhh
Q 022958 92 GSRDLQMVKIGLRVLTRPVADKLPTVYRALGENYNERVLPSIIHETLKAVVAQYNASQLITQ-RETVSREIRKILTERAA 170 (289)
Q Consensus 92 ~T~D~~~v~v~~~v~y~i~~~~~~~~~~~~g~~~~~~~l~~~~~~~lr~~~~~~~~~ei~~~-R~~i~~~v~~~l~~~l~ 170 (289)
.|+|++.+.+++++.|+| .|+..++. +..+.+..|.+.+++.+|+++++++++|++++ |+++++.+.+.+++.++
T Consensus 81 ~T~D~~~v~vd~~v~yrI--~d~~~~~~--~~~~~~~~l~~~~~~~lr~~i~~~~~~eil~~~R~~i~~~i~~~l~~~~~ 156 (266)
T cd03404 81 LTGDENIVDVEFAVQYRI--SDPYDYLF--NVRDPEGTLRQAAESAMREVVGRSTLDDVLTEGREEIAQDVRELLQAILD 156 (266)
T ss_pred EeCCCCEEEEEEEEEEEE--CCHHHHHh--hCCCHHHHHHHHHHHHHHHHHhhCcHHHHHHhCHHHHHHHHHHHHHHHhh
Confidence 899999999999999996 56665544 34556678999999999999999999999986 99999999999999998
Q ss_pred cC--CeEEEEEEeeccccCHHHHHHHHHHHHHHHHHHHHH-------------------HHHHHHHHHHHHHHHHhhhHH
Q 022958 171 NF--NIALDDVSITSLTFGKEFTSAIEAKQVAAQEAERAK-------------------YIVEKAEQDKRSAIIRAQGEA 229 (289)
Q Consensus 171 ~~--Gi~v~~v~I~~i~~p~~~~~aie~~~~a~q~~~~a~-------------------~~i~~A~aea~~~~~~A~aea 229 (289)
.| |++|.+|.|++++||+++.++|+++..++|++++++ ..+..|++++++..++|+||+
T Consensus 157 ~~~~Gi~v~~v~i~~i~~p~~i~~a~~~~~~A~q~~~~~~~eae~~a~~~~~~A~~ea~~~~~~A~a~~~~~~~~ae~~a 236 (266)
T cd03404 157 AYKAGIEIVGVNLQDADPPEEVQDAFDDVNKARQDRERLINEAEAYANEVVPKARGEAARIIQEAEAYKEEVIAEAQGEA 236 (266)
T ss_pred ccCCCeEEEEEEEEeCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 66 999999999999999999999988888777554332 245566677777888888899
Q ss_pred HHHHHHHHHhhcChhhHH-HHHHHHHHHH
Q 022958 230 TSAQLIGQAIANNPAFIT-LRKIEAAREI 257 (289)
Q Consensus 230 ea~~~~~~a~~~~p~~~~-~~~~e~~~~i 257 (289)
++.+++.++|+++|+++. ..++++++++
T Consensus 237 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 265 (266)
T cd03404 237 ARFESLLAEYKKAPDVTRERLYLETMEEV 265 (266)
T ss_pred HHHHHHHHHHhhChHHHHHHHHHHHHHHh
Confidence 999999999999999764 5899998874
No 10
>cd03407 Band_7_4 A subgroup of the band 7 domain of flotillin (reggie) like proteins. This subgroup contains proteins similar to stomatin, prohibitin, flotillin, HlfK/C and podicin. Many of these band 7 domain-containing proteins are lipid raft-associated. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Microdomains formed from flotillin proteins may in addition be dynamic units with their own regulatory functions. Flotillins have been implicated in signal transduction, vesicle trafficking, cytoskeleton rearrangement and are known to interact with a variety of proteins. Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and participates in trafficking of Glut1 glucose transporters. Prohibitin may act as a chaperone for the stabilization of mitochondrial proteins. Prokaryotic H
Probab=100.00 E-value=4.5e-37 Score=269.41 Aligned_cols=224 Identities=18% Similarity=0.258 Sum_probs=188.2
Q ss_pred CCeEEEEEccccCccceeeCCcceEEccccCccE-EEeeeeeeeeeeecccccCCcEEEEEEEEEeecCCCCHHHHHHHh
Q 022958 43 GGHRAIMFNRITGVKDKVYPEGTHLMVPWFERPV-IYDVRARPHLVESTSGSRDLQMVKIGLRVLTRPVADKLPTVYRAL 121 (289)
Q Consensus 43 ~g~~gVv~~r~gg~~~~~~~pG~~~~~P~~~~v~-~~~~~~~~~~~~~~~~T~D~~~v~v~~~v~y~i~~~~~~~~~~~~ 121 (289)
+|+.||+. |||+ +.++++||+||++||++++. .++++.++++++.++.|+|++.|++|++++|||...++..++.++
T Consensus 1 q~~~~Vv~-rfGk-~~~~l~pGlhf~~P~i~~v~~~~~~r~~~~~~~~~~lTkD~~~V~vd~~v~yrI~d~~~~~~~~~~ 78 (262)
T cd03407 1 QSQVAIIE-RFGK-FFKVAWPGCHFVIPLVETVAGRLSLRVQQLDVRVETKTKDNVFVTVVGQIQYRVSEENATDAFYKL 78 (262)
T ss_pred CcEEEEEe-ecCc-ccccCCCCeEEEeccccceeeEEeeeEEEecCCCceEcCCCCEEEEEEEEEEEECCcHHHHHHHHc
Confidence 48999997 9965 55789999999999999984 899999999998889999999999999999997554544666555
Q ss_pred CccccccccchHHHHHHHHHHhhcChhHHhhhHHHHHHHHHHHHHHHhhcCCeEEEEEEeeccccCHHHHHHHHHHHHHH
Q 022958 122 GENYNERVLPSIIHETLKAVVAQYNASQLITQRETVSREIRKILTERAANFNIALDDVSITSLTFGKEFTSAIEAKQVAA 201 (289)
Q Consensus 122 g~~~~~~~l~~~~~~~lr~~~~~~~~~ei~~~R~~i~~~v~~~l~~~l~~~Gi~v~~v~I~~i~~p~~~~~aie~~~~a~ 201 (289)
+ +....|.+.+++++|+++|+++++|++++|++|+..+.+.+++.+++|||.|.+|.|++++||+++.++|+++..|+
T Consensus 79 ~--~~~~~l~~~~~s~lR~vig~~~l~eil~~R~~I~~~i~~~l~~~l~~~GI~V~~v~I~~i~~p~~v~~A~~~~~~A~ 156 (262)
T cd03407 79 G--NPEEQIQSYVFDVLRARIPKLTLDELFEQKDEIAKAVEEELREAMSRYGFEIVATLITDIDPDAEVKRAMNEINAAQ 156 (262)
T ss_pred C--CHHHHHHHHHHHHHHHHhcCccHHHHHhhHHHHHHHHHHHHHHHHHhcCcEEEEEEEEecCCCHHHHHHHHHHHHHH
Confidence 4 33458999999999999999999999999999999999999999999999999999999999999999999888887
Q ss_pred HHHHHH----H----HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhc-------------ChhhH----HHHHHHHHHH
Q 022958 202 QEAERA----K----YIVEKAEQDKRSAIIRAQGEATSAQLIGQAIAN-------------NPAFI----TLRKIEAARE 256 (289)
Q Consensus 202 q~~~~a----~----~~i~~A~aea~~~~~~A~aeaea~~~~~~a~~~-------------~p~~~----~~~~~e~~~~ 256 (289)
++.+++ + ..+..|++++++.+++|+|+|++.++++++... .|+.. ..+|+|++++
T Consensus 157 ~~~~a~~~~Aea~~~~~i~~A~~ea~a~~~~Aeg~a~a~~~~A~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~e~~~~ 236 (262)
T cd03407 157 RQRVAAVHKAEAEKIKDIKAAEADAEAKRLQGVGAAEQRQAIADGLRESILSLADAVPGMTAKDVMDLLLVNQYFDTLKA 236 (262)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhcccccchHHHHHHHHHHHHHHH
Confidence 765533 1 356788888888888888888888887776421 23322 3589999999
Q ss_pred HHHHhcCCCCEEEEcCC
Q 022958 257 IAQTIAHSANKVFLNSD 273 (289)
Q Consensus 257 i~~~~~~~~~~i~l~~~ 273 (289)
++. ++++++++|.+
T Consensus 237 ~~~---~~~kviv~p~~ 250 (262)
T cd03407 237 YGR---SSSTVVFRPHG 250 (262)
T ss_pred HHh---CCCCEEEecCC
Confidence 875 44577889876
No 11
>cd03403 Band_7_stomatin_like Band_7_stomatin_like: A subgroup of the band 7 domain of flotillin (reggie) like proteins similar to stomatin and podicin (two lipid raft-associated integral membrane proteins). Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Stomatin is widely expressed and, highly expressed in red blood cells. It localizes predominantly to the plasma membrane and to intracellular vesicles of the endocytic pathway, where it is present in higher order homo-oligomeric complexes (of between 9 and 12 monomers). Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and, is implicated in trafficking of Glut1 glucose transporters. Prohibitin is a mitochondrial inner-membrane protein hypothesized to act as a chaperone for the stabilization of mitochondrial proteins. Podicin local
Probab=100.00 E-value=4e-35 Score=250.25 Aligned_cols=210 Identities=24% Similarity=0.382 Sum_probs=180.1
Q ss_pred ecCCeEEEEEccccCccceeeCCcceEEccccCcc-EEEeeeeeeeeeee-cccccCCcEEEEEEEEEeecCCCCHHHHH
Q 022958 41 VEGGHRAIMFNRITGVKDKVYPEGTHLMVPWFERP-VIYDVRARPHLVES-TSGSRDLQMVKIGLRVLTRPVADKLPTVY 118 (289)
Q Consensus 41 V~~g~~gVv~~r~gg~~~~~~~pG~~~~~P~~~~v-~~~~~~~~~~~~~~-~~~T~D~~~v~v~~~v~y~i~~~~~~~~~ 118 (289)
|++||+||++ +||+.. .+++||+||++||++++ +.+|++.+.++++. .+.|+|++++.+++++.||| .|+..++
T Consensus 1 V~~ge~~Vv~-~~G~~~-~~~~pG~~f~~P~~~~v~~~v~~r~~~~~~~~~~v~T~D~~~v~v~~~v~yrI--~d~~~~~ 76 (215)
T cd03403 1 VPQYERGVVE-RLGKYH-RTLGPGLHFIIPFIDRIAYKVDLREQVLDVPPQEVITKDNVTVRVDAVLYYRV--VDPVKAV 76 (215)
T ss_pred CCcceEEEEE-EcCcCc-cccCCcEEEEeccceEEEEEEeeEEEEEccCCceeEcCCCCEEEEEEEEEEEE--ecHHHHH
Confidence 6899999998 897654 46999999999999999 99999999999866 48999999999999999995 5666665
Q ss_pred HHhCccccccccchHHHHHHHHHHhhcChhHHhhhHHHHHHHHHHHHHHHhhcCCeEEEEEEeeccccCHHHHHHHHHHH
Q 022958 119 RALGENYNERVLPSIIHETLKAVVAQYNASQLITQRETVSREIRKILTERAANFNIALDDVSITSLTFGKEFTSAIEAKQ 198 (289)
Q Consensus 119 ~~~g~~~~~~~l~~~~~~~lr~~~~~~~~~ei~~~R~~i~~~v~~~l~~~l~~~Gi~v~~v~I~~i~~p~~~~~aie~~~ 198 (289)
.. .++++..+.+.+++++|+++++++++|++++|+++++.+.+.|++.+.+|||+|.+|.|+++++|+++.++++++.
T Consensus 77 ~~--~~~~~~~l~~~~~~~lr~~i~~~~~~el~~~R~~i~~~i~~~l~~~l~~~Gi~v~~v~i~~i~~p~~~~~ai~~~~ 154 (215)
T cd03403 77 YG--VEDYRYAISQLAQTTLRSVIGKMELDELLSEREEINAELVEILDEATDPWGVKVERVEIKDIILPQEIQEAMAKQA 154 (215)
T ss_pred hc--CCCHHHHHHHHHHHHHHHHHccccHHHHHhhHHHHHHHHHHHHHHHHhccCeEEEEEEEeeecCCHHHHHHHHHHH
Confidence 53 3455668999999999999999999999999999999999999999999999999999999999999999997554
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhh---cChhhHHHHHHHHHHHHHHHhcCCCCEEEEcCC
Q 022958 199 VAAQEAERAKYIVEKAEQDKRSAIIRAQGEATSAQLIGQAIA---NNPAFITLRKIEAAREIAQTIAHSANKVFLNSD 273 (289)
Q Consensus 199 ~a~q~~~~a~~~i~~A~aea~~~~~~A~aeaea~~~~~~a~~---~~p~~~~~~~~e~~~~i~~~~~~~~~~i~l~~~ 273 (289)
. |+.++++++++|+|++++.++.+++.+ .+|.+++++++|+++.+++ ..+.+++++++
T Consensus 155 ~--------------A~~~~~a~i~~A~ge~~a~~~~aea~~~~~~~~~~~~~~~~e~~~~~~~---~~~~~~~~~~~ 215 (215)
T cd03403 155 E--------------AEREKRAKIIEAEGERQAAILLAEAAKQAAINPAALQLRELETLEEIAK---EAASTVVFPAP 215 (215)
T ss_pred H--------------HHHHHHHHHHHhHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHh---ccCCeEEeeCC
Confidence 3 445566777888888888888887763 3699999999999999997 44456666553
No 12
>cd03406 Band_7_3 A subgroup of the band 7 domain of flotillin (reggie) like proteins. This subgroup contains proteins similar to stomatin, prohibitin, flotillin, HlfK/C and podicin. Many of these band 7 domain-containing proteins are lipid raft-associated. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Microdomains formed from flotillin proteins may in addition be dynamic units with their own regulatory functions. Flotillins have been implicated in signal transduction, vesicle trafficking, cytoskeleton rearrangement and are known to interact with a variety of proteins. Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and participates in trafficking of Glut1 glucose transporters. Prohibitin may act as a chaperone for the stabilization of mitochondrial proteins. Prokaryotic H
Probab=100.00 E-value=6e-35 Score=255.20 Aligned_cols=199 Identities=17% Similarity=0.287 Sum_probs=170.2
Q ss_pred hcccEEEecCCeEEEEEccccCccceeeCCcceEEccccCccEEEeeeeeeeeee-ecccccCCcEEEEE-EEEEeecCC
Q 022958 34 AANSLYNVEGGHRAIMFNRITGVKDKVYPEGTHLMVPWFERPVIYDVRARPHLVE-STSGSRDLQMVKIG-LRVLTRPVA 111 (289)
Q Consensus 34 ~~~~~~~V~~g~~gVv~~r~gg~~~~~~~pG~~~~~P~~~~v~~~~~~~~~~~~~-~~~~T~D~~~v~v~-~~v~y~i~~ 111 (289)
+++|+++|++||+||++ |||+..+.+++||+||++||++++..++++.++++.+ ..+.|+||+.+++| ..++|.+++
T Consensus 1 ~~ssv~iV~ege~gVV~-RfGkv~~~~l~PGLHfkiPfId~V~~v~vrlq~~~~~~~~v~TkDg~~ItvD~i~v~~ivdp 79 (280)
T cd03406 1 LSSALHKIEEGHVGVYY-RGGALLTSTSGPGFHLMLPFITTYKSVQVTLQTDEVKNVPCGTSGGVMIYFDRIEVVNFLIP 79 (280)
T ss_pred CCceEEEECCCeEEEEE-ECCcccccccCCceEEecCCceEEEEEEeEEEEeccCCcccccCCCcEEEEEEEEEEEecCH
Confidence 46799999999999998 9988777899999999999999999999999888764 45789999999999 568888877
Q ss_pred CCHHHHHHHhCccccccccchHHHHHHHHHHhhcChhHHhh-hHHHHHHHHHHHHHHHhhcC--CeEEEEEEeeccccCH
Q 022958 112 DKLPTVYRALGENYNERVLPSIIHETLKAVVAQYNASQLIT-QRETVSREIRKILTERAANF--NIALDDVSITSLTFGK 188 (289)
Q Consensus 112 ~~~~~~~~~~g~~~~~~~l~~~~~~~lr~~~~~~~~~ei~~-~R~~i~~~v~~~l~~~l~~~--Gi~v~~v~I~~i~~p~ 188 (289)
..+...+.+++.++....|.+.+++++|+++|+++++|+++ +|+++...+++.+++.++.| ||+|.+|.|++++||+
T Consensus 80 ~~~~~~~~~y~~~~~~~~I~~~Vrsavr~vig~~tldeVis~~Rd~I~~~I~~~l~e~l~~y~~GI~I~dV~I~~id~P~ 159 (280)
T cd03406 80 DSVYDIVKNYTADYDKTLIFNKIHHELNQFCSVHTLQEVYIDLFDQIDENLKLALQKDLTRMAPGLEIQAVRVTKPKIPE 159 (280)
T ss_pred HHHHHHHHHHhHhhHHHHHHHHHHHHHHHHhhhCCHHHHHhccHHHHHHHHHHHHHHHHhccCCCcEEEEEEEEecCCCH
Confidence 77777777777778899999999999999999999999997 89999999999999999987 9999999999999999
Q ss_pred HHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 022958 189 EFTSAIEAKQVAAQEAE-----RAKYIVEKAEQDKRSAIIRAQGEATSAQL 234 (289)
Q Consensus 189 ~~~~aie~~~~a~q~~~-----~a~~~i~~A~aea~~~~~~A~aeaea~~~ 234 (289)
++.++|+ +..++.+.. +.+.....||+++.+.+++|+|+|+-.++
T Consensus 160 ~V~~afe-rM~aER~k~~~~~~~~~~~~~~ae~~~~~~~~~a~~~~~~~~~ 209 (280)
T cd03406 160 AIRRNYE-LMEAEKTKLLIAIQKQKVVEKEAETERKKAVIEAEKVAQVAKI 209 (280)
T ss_pred HHHHHHH-HHHHHHHhhhhccchhHHHHHHhhHHHHHHHHHHHHHhhHHHH
Confidence 9999995 333333222 23345667888888888888887776543
No 13
>COG0330 HflC Membrane protease subunits, stomatin/prohibitin homologs [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.8e-32 Score=240.97 Aligned_cols=238 Identities=26% Similarity=0.370 Sum_probs=184.5
Q ss_pred HHHHHHHHhhcccEEEecCCeEEEEEccccCccceeeC-CcceEEccc----cCccEEEeeeeeeeee-ee-cccccCCc
Q 022958 25 IIGGIGLYAAANSLYNVEGGHRAIMFNRITGVKDKVYP-EGTHLMVPW----FERPVIYDVRARPHLV-ES-TSGSRDLQ 97 (289)
Q Consensus 25 v~~~~~~~~~~~~~~~V~~g~~gVv~~r~gg~~~~~~~-pG~~~~~P~----~~~v~~~~~~~~~~~~-~~-~~~T~D~~ 97 (289)
++++++++++++++++|++++.+++. +||. ..+.++ ||+||++|| ......++.+.+.++. +. .+.|+|+.
T Consensus 8 ~~l~~~~~~~~~~~~~v~~~~~~vv~-r~G~-~~~~~~~pGl~f~iP~~~~~~~~~~~~~~~~~~~d~~~~q~viT~D~~ 85 (291)
T COG0330 8 ILLVILIVLLFSSIFVVKEGERGVVL-RFGR-YTRTLGEPGLHFKIPFPEAIEEVVVRVDLRERTLDVGPPQEVITKDNV 85 (291)
T ss_pred HHHHHHHHHHHceeEEEcCCceEEEE-Eecc-eeeecCCCceEEEcCCccceeeeeeeeeeEEEEeccCCcceEEecCCC
Confidence 36667788889999999999999998 9955 455777 999999999 3344677888888888 44 48999999
Q ss_pred EEEEEEEEEeecCCCCHHHHHHHhCccccccccchHHHHHHHHHHhhcChhHHhhhHH-HHHHHHHHHHHHHhhcCCeEE
Q 022958 98 MVKIGLRVLTRPVADKLPTVYRALGENYNERVLPSIIHETLKAVVAQYNASQLITQRE-TVSREIRKILTERAANFNIAL 176 (289)
Q Consensus 98 ~v~v~~~v~y~i~~~~~~~~~~~~g~~~~~~~l~~~~~~~lr~~~~~~~~~ei~~~R~-~i~~~v~~~l~~~l~~~Gi~v 176 (289)
.|++|++++|| +.|+..++.+ .++.+..+.+.+++.+|+++++++++|++++|+ .++..+.+.|++.+++||+.|
T Consensus 86 ~V~vd~~v~~r--v~d~~~~~~~--v~~~~~~l~~~~~~~lR~vig~~~~~e~~~~~~~~i~~~i~~~l~~~~~~~Gi~V 161 (291)
T COG0330 86 IVSVDAVVQYR--VTDPQKAVYN--VENAEAALRQLVQSALRSVIGRMTLDELLTERRAEINAKIREILDEAADPWGIKV 161 (291)
T ss_pred EEEEEEEEEEE--EcCHHHHHHh--cCCHHHHHHHHHHHHHHHHHccccHHHHhhCchHHHHHHHHHHHHHhhhhcCcEE
Confidence 99999999999 5666655553 455888899999999999999999999999888 999999999999999999999
Q ss_pred EEEEeeccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHh-----------------
Q 022958 177 DDVSITSLTFGKEFTSAIEAKQVAAQEAERAKYIVEKAEQDKRSAIIRAQGEATSAQLIGQAI----------------- 239 (289)
Q Consensus 177 ~~v~I~~i~~p~~~~~aie~~~~a~q~~~~a~~~i~~A~aea~~~~~~A~aeaea~~~~~~a~----------------- 239 (289)
.+|.|++++||+++..+++++..++++. ++ .+..|++++++.+++|+|++++..+++++.
T Consensus 162 ~~V~i~~i~~p~ev~~a~~~~~~Aer~~-ra--~i~~Ae~~~~~~~~~a~g~~~a~~i~aea~~~a~~~~~a~~~~~~~~ 238 (291)
T COG0330 162 VDVEIKDIDPPEEVQAAMEKQMAAERDK-RA--EILEAEGEAQAAILRAEGEAEAAIILAEAEAEAEVIARAEADAAKII 238 (291)
T ss_pred EEEEEeecCCCHHHHHHHHHHHHHHHHH-HH--HHHHhHhHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHhhccHHHHHH
Confidence 9999999999999999997555555443 33 455566655555555555555555554443
Q ss_pred ----hcC---hhhHHHHHHHHHHHHHHHhcCCCCEEEEcCC
Q 022958 240 ----ANN---PAFITLRKIEAAREIAQTIAHSANKVFLNSD 273 (289)
Q Consensus 240 ----~~~---p~~~~~~~~e~~~~i~~~~~~~~~~i~l~~~ 273 (289)
..+ |.+..+++++.+.+.+. +++++++++|.+
T Consensus 239 ~~~~~~~~~~~~~~~~r~~~~~~~~~~--~~~~~~v~~p~~ 277 (291)
T COG0330 239 AAALREAPAAPQALAQRYLEELLEIAL--AGNSKVVVVPNS 277 (291)
T ss_pred HhhcccccchhHHHHHHHHHHHHHHhh--CCCCeEEEecCC
Confidence 333 45667789988888664 233444455544
No 14
>KOG2621 consensus Prohibitins and stomatins of the PID superfamily [Energy production and conversion]
Probab=100.00 E-value=8.3e-34 Score=239.26 Aligned_cols=235 Identities=19% Similarity=0.275 Sum_probs=202.4
Q ss_pred HHHHHHHHHHHHhhcccEEEecCCeEEEEEccccCcc-ceeeCCcceEEccccCccEEEeeeeeeeeeeec-ccccCCcE
Q 022958 21 IKVGIIGGIGLYAAANSLYNVEGGHRAIMFNRITGVK-DKVYPEGTHLMVPWFERPVIYDVRARPHLVEST-SGSRDLQM 98 (289)
Q Consensus 21 ~~~~v~~~~~~~~~~~~~~~V~~g~~gVv~~r~gg~~-~~~~~pG~~~~~P~~~~v~~~~~~~~~~~~~~~-~~T~D~~~ 98 (289)
+.++++++.+-+-++.|+.+|++.|++|++ |.|+.. ...-+||+.|.+|++++.+++|.+.+.++++++ +.|+|.+.
T Consensus 38 ~S~llvi~TfP~S~~fclKiv~eYeR~VIf-RLGRl~~~~~rGPGi~fvlPCIDt~~kVDLRt~sfnVPpqeIltkDsvt 116 (288)
T KOG2621|consen 38 LSFLLVLMTFPISIWFCLKIVQEYERAVIF-RLGRLRTGGARGPGLFFLLPCIDTFRKVDLRTQSFNVPPQEILTKDSVT 116 (288)
T ss_pred HHHHHHHHHhHHHHHHHHHhhHHHhhhhhe-eeeeccccCCCCCCeEEEecccceeeeeeeeEEeecCCHHHHhcccceE
Confidence 444555556666678899999999999999 997753 457799999999999999999999999999985 99999999
Q ss_pred EEEEEEEEeecCCCCHHHHHHHhCccccccccchHHHHHHHHHHhhcChhHHhhhHHHHHHHHHHHHHHHhhcCCeEEEE
Q 022958 99 VKIGLRVLTRPVADKLPTVYRALGENYNERVLPSIIHETLKAVVAQYNASQLITQRETVSREIRKILTERAANFNIALDD 178 (289)
Q Consensus 99 v~v~~~v~y~i~~~~~~~~~~~~g~~~~~~~l~~~~~~~lr~~~~~~~~~ei~~~R~~i~~~v~~~l~~~l~~~Gi~v~~ 178 (289)
+++|+.|+||+ .|+..-+. +.++...-.+-.+++.+|+++++.++.|+++.|+.|+.++...|++....||++|++
T Consensus 117 vsVdAvVyyri--~dpi~sv~--~V~Da~~sTr~lAqttLrn~lgtk~L~eils~r~~is~~~~~~Ld~~T~~WGvkVeR 192 (288)
T KOG2621|consen 117 ISVDAVVYYRI--SDPIIAVN--NVGDADNATRLLAQTTLRNYLGTKTLSEILSSREVIAQEAQKALDEATEPWGVKVER 192 (288)
T ss_pred EEeceEEEEEe--cCHHHHHH--hccCHHHHHHHHHHHHHHHHHccCcHHHHHHhHHHHHHHHHHHhhhcccccceEEEE
Confidence 99999999994 66655554 456666667889999999999999999999999999999999999999999999999
Q ss_pred EEeeccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH---hhcChhhHHHHHHHHHH
Q 022958 179 VSITSLTFGKEFTSAIEAKQVAAQEAERAKYIVEKAEQDKRSAIIRAQGEATSAQLIGQA---IANNPAFITLRKIEAAR 255 (289)
Q Consensus 179 v~I~~i~~p~~~~~aie~~~~a~q~~~~a~~~i~~A~aea~~~~~~A~aeaea~~~~~~a---~~~~p~~~~~~~~e~~~ 255 (289)
|.|+||++|.+.+.+|-. +++ |..++.++++.||||..|.+.++++ ++.+|..++++|++++.
T Consensus 193 VEikDvrlp~qlqramaa------eAe--------A~reA~Akviaaege~~as~al~~aa~v~~~sp~alqLryLqtl~ 258 (288)
T KOG2621|consen 193 VEIKDVRLPAQLQRAMAA------EAE--------ATREARAKVIAAEGEKKASEALKEAADVISESPIALQLRYLQTLN 258 (288)
T ss_pred EEEeeeechHhhhhhhhc------hhh--------hhhhhhhhHHHHHhhhHHHHHHHHhhccccCCchhhhhhhhhcch
Confidence 999999999999988831 111 6677889999999999999999877 57899999999999999
Q ss_pred HHHHHhcCCCCEEEEcCCCccc
Q 022958 256 EIAQTIAHSANKVFLNSDDLLL 277 (289)
Q Consensus 256 ~i~~~~~~~~~~i~l~~~~~~~ 277 (289)
+++. .+++++++|-.-+++
T Consensus 259 sia~---e~~~tivfP~p~e~l 277 (288)
T KOG2621|consen 259 SIAA---EKNSTIVFPLPIDLL 277 (288)
T ss_pred hhhc---CCCCCcccCCCHHHH
Confidence 9874 778888988654443
No 15
>cd03402 Band_7_2 A subgroup of the band 7 domain of flotillin (reggie) like proteins. This subgroup contains proteins similar to stomatin, prohibitin, flotillin, HlfK/C and podicin. Many of these band 7 domain-containing proteins are lipid raft-associated. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Microdomains formed from flotillin proteins may in addition be dynamic units with their own regulatory functions. Flotillins have been implicated in signal transduction, vesicle trafficking, cytoskeleton rearrangement and are known to interact with a variety of proteins. Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and participates in trafficking of Glut1 glucose transporters. Prohibitin may act as a chaperone for the stabilization of mitochondrial proteins. Prokaryotic H
Probab=99.97 E-value=3.6e-30 Score=218.93 Aligned_cols=161 Identities=18% Similarity=0.211 Sum_probs=142.3
Q ss_pred cEEEecCCeEEEEEccccCccceeeCCcceEEccccCccEEEeeeeeeeeeeec-ccccCCcEEEEEEEEEeecCCCCHH
Q 022958 37 SLYNVEGGHRAIMFNRITGVKDKVYPEGTHLMVPWFERPVIYDVRARPHLVEST-SGSRDLQMVKIGLRVLTRPVADKLP 115 (289)
Q Consensus 37 ~~~~V~~g~~gVv~~r~gg~~~~~~~pG~~~~~P~~~~v~~~~~~~~~~~~~~~-~~T~D~~~v~v~~~v~y~i~~~~~~ 115 (289)
|+++|+|||.||++ +||+..+.+.+||+||++||++ ..++|++.++++.+.. +.|+|++++.+++.+.||| .|+.
T Consensus 1 g~~iV~~ge~~Vv~-rfGk~~~t~~~pGL~~~~P~~~-~~~vd~R~~~~~~~~~~v~T~D~~~v~V~~~V~~rV--~Dp~ 76 (219)
T cd03402 1 GLFVVEPNQARVLV-LFGRYIGTIRRTGLRWVNPFSS-KKRVSLRVRNFESEKLKVNDANGNPIEIAAVIVWRV--VDTA 76 (219)
T ss_pred CeEEECCCeeEEEE-EcCcCcccccCCceEEEeccce-EEEEeeEEEEecCCCceeEcCCCCEEEEEEEEEEEE--cCHH
Confidence 68999999999998 9988776667999999999985 5889999999888764 8999999999999999995 5666
Q ss_pred HHHHHhCccccccccchHHHHHHHHHHhhcChhHHhh-------hHHHHHHHHHHHHHHHhhcCCeEEEEEEeeccccCH
Q 022958 116 TVYRALGENYNERVLPSIIHETLKAVVAQYNASQLIT-------QRETVSREIRKILTERAANFNIALDDVSITSLTFGK 188 (289)
Q Consensus 116 ~~~~~~g~~~~~~~l~~~~~~~lr~~~~~~~~~ei~~-------~R~~i~~~v~~~l~~~l~~~Gi~v~~v~I~~i~~p~ 188 (289)
+++. +.++++..+...+++++|+++++|+++++++ +|++++.++.+.+++.++.|||+|.+++|+++.||+
T Consensus 77 ka~~--~v~~~~~~l~~~~~salR~vig~~~~d~il~~~~~l~~~r~~I~~~l~~~l~~~l~~~GI~V~~v~I~~l~~p~ 154 (219)
T cd03402 77 KAVF--NVDDYEEFVHIQSESALRHVASQYPYDDPVNKETSLRGNSDEVSDELARELQERLAVAGVEVVEARITHLAYAP 154 (219)
T ss_pred HHHH--HcCCHHHHHHHHHHHHHHHHHccCcHHHHhccccccccCHHHHHHHHHHHHHHHHHhhCcEEEEEEEEeecCCH
Confidence 5544 3455677899999999999999999999985 679999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHH
Q 022958 189 EFTSAIEAKQVAAQE 203 (289)
Q Consensus 189 ~~~~aie~~~~a~q~ 203 (289)
++.++|+++++|+++
T Consensus 155 ei~~am~~R~~Ae~~ 169 (219)
T cd03402 155 EIAQAMLQRQQASAI 169 (219)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999877754443
No 16
>PF01145 Band_7: SPFH domain / Band 7 family; InterPro: IPR001107 Band 7 protein is an integral membrane protein which is thought to regulate cation conductance. A variety of proteins belong to this family. These include the prohibitins, cytoplasmic anti-proliferative proteins and stomatin, an erythrocyte membrane protein. Bacterial HflC protein also belongs to this family. Note: Band 4.1 (IPR021187 from INTERPRO) and Band 7 proteins refer to human erythrocyte membrane proteins separated by SDS polyacrylamide gels and stained with coomassie blue [].; PDB: 2RPB_A 3BK6_B 1WIN_A.
Probab=99.96 E-value=1.2e-29 Score=209.89 Aligned_cols=162 Identities=29% Similarity=0.481 Sum_probs=112.9
Q ss_pred EEecCCeEEEEEccccCccceeeCCcceEEccccCccEEEeeeeeeeeeee---cccccCCcEEEEEEEEEeecCCCCHH
Q 022958 39 YNVEGGHRAIMFNRITGVKDKVYPEGTHLMVPWFERPVIYDVRARPHLVES---TSGSRDLQMVKIGLRVLTRPVADKLP 115 (289)
Q Consensus 39 ~~V~~g~~gVv~~r~gg~~~~~~~pG~~~~~P~~~~v~~~~~~~~~~~~~~---~~~T~D~~~v~v~~~v~y~i~~~~~~ 115 (289)
++|++||+||++ ++|+... +++||+||.+||.++++.+|++.+++++.. .+.|+|++++.+++++.|++ +++.
T Consensus 1 ~~V~~g~~~V~~-~~G~~~~-~~~~G~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~t~D~~~v~v~~~v~y~i--~~~~ 76 (179)
T PF01145_consen 1 YTVPPGEVGVVV-RFGKVKD-VLGPGLHFVIPFIQKVYVYPTRVQTIEFTREPITVRTKDGVPVDVDVTVTYRI--EDPP 76 (179)
T ss_dssp ---------------------------------EEE--S--SS-EEEEEEE--EEEE-TTS-EEEEEEEEEEEE--S-CC
T ss_pred CEeCCCEEEEEE-ECCeEeE-EECCCeEEEeCCcCeEEEEeCEEEecccchhhhhhhhcccceeeeeEEEEEEe--chHH
Confidence 579999999998 6766554 999999999999899999999999999998 79999999999999999996 7777
Q ss_pred HHHHHh--CccccccccchHHHHHHHHHHhhcChhHHhhhHHHHHHHHHHHHHHHhhcCCeEEEEEEeeccccCHHHHHH
Q 022958 116 TVYRAL--GENYNERVLPSIIHETLKAVVAQYNASQLITQRETVSREIRKILTERAANFNIALDDVSITSLTFGKEFTSA 193 (289)
Q Consensus 116 ~~~~~~--g~~~~~~~l~~~~~~~lr~~~~~~~~~ei~~~R~~i~~~v~~~l~~~l~~~Gi~v~~v~I~~i~~p~~~~~a 193 (289)
.++.++ +.++.+..|++.+++++|+++++++++|++++|.++.+.+++.|++.+.++|++|.++.|.++++|+++.++
T Consensus 77 ~~~~~~~~~~~~~~~~l~~~~~~~~r~~~~~~~~~~~~~~r~~~~~~v~~~l~~~~~~~Gi~i~~v~i~~~~~~~~~~~~ 156 (179)
T PF01145_consen 77 KFVQNYEGGEEDPENLLRQIVESALREVISSYSLEEIYSNREEIADEVREQLQEALEEYGIEITSVQITDIDPPQEVEEA 156 (179)
T ss_dssp CCCCCCSS-HCHHHHHHHHHHHHHHHHHHHCS-HHHHHHTHHHHHHHHHHHHHHHHGGGTEEEEEEEEEEEEECTTHHHH
T ss_pred HHHHhhhcchhhhhhhhhhhhhhhhheEeeeeehHHhhhhhhhhhHhHHHHHhhhccccEEEEEEEEEeecCCCHHHHHH
Confidence 788777 467888999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHH
Q 022958 194 IEAKQVAAQEA 204 (289)
Q Consensus 194 ie~~~~a~q~~ 204 (289)
+++++.+++++
T Consensus 157 i~~~~~a~~~~ 167 (179)
T PF01145_consen 157 IEEKQRAEQEA 167 (179)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 98777666665
No 17
>smart00244 PHB prohibitin homologues. prohibitin homologues
Probab=99.96 E-value=3.7e-28 Score=197.46 Aligned_cols=156 Identities=26% Similarity=0.406 Sum_probs=138.5
Q ss_pred ccEEEecCCeEEEEEccccCccceeeCCcceEEccccCccEEEeeeeeeeeeee-cccccCCcEEEEEEEEEeecCCCCH
Q 022958 36 NSLYNVEGGHRAIMFNRITGVKDKVYPEGTHLMVPWFERPVIYDVRARPHLVES-TSGSRDLQMVKIGLRVLTRPVADKL 114 (289)
Q Consensus 36 ~~~~~V~~g~~gVv~~r~gg~~~~~~~pG~~~~~P~~~~v~~~~~~~~~~~~~~-~~~T~D~~~v~v~~~v~y~i~~~~~ 114 (289)
+|+++|++||+||++ +||+... +++||+||++||+++++.++++.+.+..+. .+.|+|++++++++++.||+ .|+
T Consensus 1 ~~~~~V~~g~~~v~~-~~G~~~~-~~~pG~~~~~P~~~~~~~~~~~~~~~~~~~~~~~t~d~~~v~v~~~v~~rv--~d~ 76 (160)
T smart00244 1 AAIKVVGEGEAGVVE-RLGRVLR-VLGPGLHFLIPFIDRVKKVDLRAQTDDVPPQEIITKDNVKVSVDAVVYYRV--LDP 76 (160)
T ss_pred CcEEEEcccEEEEEE-ecCcccc-ccCCCEEEEecceeEEEEEeeEEEeecCCceEEEecCCcEEEEeEEEEEEE--ccH
Confidence 589999999999998 8977665 899999999999999999999999988865 58999999999999999995 444
Q ss_pred HHHHHHh-CccccccccchHHHHHHHHHHhhcChhHHhh-hHHHHHHHHHHHHHHHhhcCCeEEEEEEeeccccCHHHHH
Q 022958 115 PTVYRAL-GENYNERVLPSIIHETLKAVVAQYNASQLIT-QRETVSREIRKILTERAANFNIALDDVSITSLTFGKEFTS 192 (289)
Q Consensus 115 ~~~~~~~-g~~~~~~~l~~~~~~~lr~~~~~~~~~ei~~-~R~~i~~~v~~~l~~~l~~~Gi~v~~v~I~~i~~p~~~~~ 192 (289)
..++.+. |.++ ..+.+.+++++|+++++++++|+++ +|+++++.+.+.+++.++++|+++.++.|+++++|+++++
T Consensus 77 ~~~~~~~~~~~~--~~l~~~i~~~ir~~i~~~~~~~i~~~~r~~i~~~v~~~l~~~~~~~Gi~i~~v~i~~i~~p~~i~~ 154 (160)
T smart00244 77 LKAVYRVLDADY--AVIEQLAQTTLRSVIGKMTLDELLTDEREKISENIREELNERAEAWGIEVEDVEIKDIRLPEEIQE 154 (160)
T ss_pred HHHhhhcCCHHH--HHHHHHHHHHHHHHHccccHHHHHHhhHHHHHHHHHHHHHHHHHhCCCEEEEEEEEecCCCHHHHH
Confidence 4444333 2221 5799999999999999999999998 7999999999999999999999999999999999999999
Q ss_pred HHHHH
Q 022958 193 AIEAK 197 (289)
Q Consensus 193 aie~~ 197 (289)
+++++
T Consensus 155 ai~~k 159 (160)
T smart00244 155 AMEQQ 159 (160)
T ss_pred HHHhh
Confidence 99865
No 18
>KOG2620 consensus Prohibitins and stomatins of the PID superfamily [Energy production and conversion]
Probab=99.95 E-value=7.4e-29 Score=206.92 Aligned_cols=187 Identities=17% Similarity=0.263 Sum_probs=151.3
Q ss_pred ccEEE--ecCCeEEEEEccccCccceeeCCcceEEccccCccEEE-eeee-eeeeeeecccccCCcEEEEEEEEEeecCC
Q 022958 36 NSLYN--VEGGHRAIMFNRITGVKDKVYPEGTHLMVPWFERPVIY-DVRA-RPHLVESTSGSRDLQMVKIGLRVLTRPVA 111 (289)
Q Consensus 36 ~~~~~--V~~g~~gVv~~r~gg~~~~~~~pG~~~~~P~~~~v~~~-~~~~-~~~~~~~~~~T~D~~~v~v~~~v~y~i~~ 111 (289)
.|+.. ||+.+++|+ +|| |++++++.||+||..|+++++..+ +.+. +.........|+||+.+.++++++||+ .
T Consensus 5 ~n~vi~~VpQ~~a~Vv-ER~-GkF~~iLePG~~fl~p~~d~i~~v~~lkeia~~~~~q~aiTkDNV~v~idgvly~rv-~ 81 (301)
T KOG2620|consen 5 TNTVIRFVPQQEAAVV-ERF-GKFHRILEPGLHFLPPVIDKIAYVHSLKEIAILDPKQEAITKDNVFVQIDGVLYYRV-V 81 (301)
T ss_pred ceeeEEeechhHhHHH-HHh-hhhhhhcCCcceechhhhhhHHHHHHHHHHhhcccccceeecccEEEEEEEEEEEEE-e
Confidence 34444 999999999 799 667889999999999998877643 3333 333333458899999999999999997 4
Q ss_pred CCHH--HHHHHhCccccccccchHHHHHHHHHHhhcChhHHhhhHHHHHHHHHHHHHHHhhcCCeEEEEEEeeccccCHH
Q 022958 112 DKLP--TVYRALGENYNERVLPSIIHETLKAVVAQYNASQLITQRETVSREIRKILTERAANFNIALDDVSITSLTFGKE 189 (289)
Q Consensus 112 ~~~~--~~~~~~g~~~~~~~l~~~~~~~lr~~~~~~~~~ei~~~R~~i~~~v~~~l~~~l~~~Gi~v~~v~I~~i~~p~~ 189 (289)
++.. ++| |.++.+..+..++++.+|+.++++++|.++.+|+.++..+.++++..+..||+++....|+||.||+.
T Consensus 82 dp~~~dAsY---gvenp~~aI~qlaqttmRsevgkltLD~vFeer~~ln~sI~eainkA~~~wG~~clr~eIrDI~pp~~ 158 (301)
T KOG2620|consen 82 DPYADDASY---GVENPEYAIQQLAQTTMRSEVGKLTLDKVFEERNSLNKSIVEAINKAMEAWGYECLRYEIRDIEPPPS 158 (301)
T ss_pred ccccccccc---ccCCHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhhcCCCHH
Confidence 4444 444 78888888999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 022958 190 FTSAIEAKQVAAQEAERAKYIVEKAEQDKRSAIIRAQGEATS 231 (289)
Q Consensus 190 ~~~aie~~~~a~q~~~~a~~~i~~A~aea~~~~~~A~aeaea 231 (289)
+..+|+ .|.+.+...+| .+..+|+++++++.+|+|++++
T Consensus 159 V~~AM~-~q~~AeR~krA--ailesEger~~~InrAEGek~s 197 (301)
T KOG2620|consen 159 VKRAMN-MQNEAERMKRA--AILESEGERIAQINRAEGEKES 197 (301)
T ss_pred HHHHHH-HHHHHHHHHHH--HHhhhhhhhHHhhhhhcchhhh
Confidence 999996 55555544444 3556666666666666665554
No 19
>KOG2962 consensus Prohibitin-related membrane protease subunits [General function prediction only]
Probab=99.92 E-value=1.1e-22 Score=166.93 Aligned_cols=171 Identities=13% Similarity=0.238 Sum_probs=147.8
Q ss_pred HHHHHHHHHhhcccEEEecCCeEEEEEccccCccceeeCCcceEEccccCccEEEeeeeeeeeeeec-ccccCCcEEEEE
Q 022958 24 GIIGGIGLYAAANSLYNVEGGHRAIMFNRITGVKDKVYPEGTHLMVPWFERPVIYDVRARPHLVEST-SGSRDLQMVKIG 102 (289)
Q Consensus 24 ~v~~~~~~~~~~~~~~~V~~g~~gVv~~r~gg~~~~~~~pG~~~~~P~~~~v~~~~~~~~~~~~~~~-~~T~D~~~v~v~ 102 (289)
.+++.+++.+++++++.|++||+||.+ |-|.-...+.+||+|+.+||+.++..+.++.|+-++... +.|+.|+.+.+|
T Consensus 9 ~~~~a~~~~~~~s~vHkieEGHvgvYy-RGGALL~~~t~PG~Hl~lPFiTt~ksVQvTLQTDev~nvPCGTsGGVlIyfd 87 (322)
T KOG2962|consen 9 AAAIALLVAFLSSAVHKIEEGHVGVYY-RGGALLTSITGPGFHLMLPFITTYKSVQVTLQTDEVKNVPCGTSGGVLIYFD 87 (322)
T ss_pred HHHHHHHHHHHHHHHhhcccCceEEEE-ecceeeeccCCCCcEEEeeeeeceeeeEEEeeccccccCCCCCCCcEEEEEe
Confidence 344456667788999999999999998 643356678999999999999999999998888777653 899999999887
Q ss_pred -EEEEeecCCCCHHHHHHHhCccccccccchHHHHHHHHHHhhcChhHHh-hhHHHHHHHHHHHHHHHhhcC--CeEEEE
Q 022958 103 -LRVLTRPVADKLPTVYRALGENYNERVLPSIIHETLKAVVAQYNASQLI-TQRETVSREIRKILTERAANF--NIALDD 178 (289)
Q Consensus 103 -~~v~y~i~~~~~~~~~~~~g~~~~~~~l~~~~~~~lr~~~~~~~~~ei~-~~R~~i~~~v~~~l~~~l~~~--Gi~v~~ 178 (289)
+-|.-++.++.+.++..+|+.+|...++-+-+...+.+.++..++.|++ .--++|.++++..|+.+|..+ |++|..
T Consensus 88 rIEVVN~L~~d~Vydiv~NYtvdYD~~lIfnKiHHE~NQFCS~HtLQeVYIdlFDqIDE~lK~ALQ~Dl~~mAPGl~iqa 167 (322)
T KOG2962|consen 88 RIEVVNFLRPDAVYDIVKNYTVDYDKTLIFNKIHHELNQFCSVHTLQEVYIDLFDQIDENLKDALQADLTRMAPGLEIQA 167 (322)
T ss_pred hhhhhhhhchhHHHHHHHHcccCCcchhhhhHHHHHHHhHhhhhHHHHHHHHHHHHHhHHHHHHHHHHHHhhCCCcEEEE
Confidence 4454455688888999999999999999999999999999999999998 578999999999999999754 999999
Q ss_pred EEeeccccCHHHHHHHH
Q 022958 179 VSITSLTFGKEFTSAIE 195 (289)
Q Consensus 179 v~I~~i~~p~~~~~aie 195 (289)
|++.....|+.++..+|
T Consensus 168 VRVTKPkIPEaiRrN~E 184 (322)
T KOG2962|consen 168 VRVTKPKIPEAIRRNFE 184 (322)
T ss_pred EEecCCCChHHHHHhHH
Confidence 99999999999998885
No 20
>cd03400 Band_7_1 A subgroup of the band 7 domain of flotillin (reggie) like proteins. This subgroup contains proteins similar to stomatin, prohibitin, flotillin, HlfK/C and podicin. Many of these band 7 domain-containing proteins are lipid raft-associated. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Microdomains formed from flotillin proteins may in addition be dynamic units with their own regulatory functions. Flotillins have been implicated in signal transduction, vesicle trafficking, cytoskeleton rearrangement and are known to interact with a variety of proteins. Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and participates in trafficking of Glut1 glucose transporters. Prohibitin may act as a chaperone for the stabilization of mitochondrial proteins. Prokaryotic H
Probab=99.85 E-value=1.7e-20 Score=146.28 Aligned_cols=120 Identities=22% Similarity=0.343 Sum_probs=112.3
Q ss_pred EeeeeeeeeeeecccccCCcEEEEEEEEEeecCCCCHHHHHHHhCccccccccchHHHHHHHHHHhhcChhHHhh-hHHH
Q 022958 78 YDVRARPHLVESTSGSRDLQMVKIGLRVLTRPVADKLPTVYRALGENYNERVLPSIIHETLKAVVAQYNASQLIT-QRET 156 (289)
Q Consensus 78 ~~~~~~~~~~~~~~~T~D~~~v~v~~~v~y~i~~~~~~~~~~~~g~~~~~~~l~~~~~~~lr~~~~~~~~~ei~~-~R~~ 156 (289)
|+++.++...+..+.|+||+++.+++++.|+|.+.++..+|.++|.++.+..|.+.+++++|+++++|+++|+++ +|++
T Consensus 3 ~~~r~~~~~~~~~v~T~D~~~v~vd~~v~y~V~~~~~~~~~~~~~~~~~~~~i~~~~~~~lR~~~~~~~~~e~i~~~R~~ 82 (124)
T cd03400 3 YSTRLQEVDEKIDVLSKEGLSINADVSVQYRINPNKAAAVHSKLGTDYARKIVRPTFRSLVREVTGRYTAEQIYSTKRKE 82 (124)
T ss_pred ccceeeecccceEEECCCCCEEEEEEEEEEEEChhhHHHHHHHhCcchhheeechhHHHHHHHHhcCCCHHHHhhhhHHH
Confidence 677888888888899999999999999999998888888898888887888999999999999999999999996 8999
Q ss_pred HHHHHHHHHHHHhhcCCeEEEEEEeeccccCHHHHHHHHHH
Q 022958 157 VSREIRKILTERAANFNIALDDVSITSLTFGKEFTSAIEAK 197 (289)
Q Consensus 157 i~~~v~~~l~~~l~~~Gi~v~~v~I~~i~~p~~~~~aie~~ 197 (289)
|++++.+.++..+.+||++|.++.|++++||+++.+|+++|
T Consensus 83 i~~~i~~~l~~~~~~~Gi~v~~v~i~~i~~P~~v~~aI~~k 123 (124)
T cd03400 83 IESAIKKELIEEFVGDGLILEEVLLRNIKLPDQIADAIEAK 123 (124)
T ss_pred HHHHHHHHHHHHhccCCeEEEEEEEecccCCHHHHHHHHhc
Confidence 99999999999999999999999999999999999999865
No 21
>cd03408 Band_7_5 A subgroup of the band 7 domain of flotillin (reggie) like proteins. This subgroup contains proteins similar to stomatin, prohibitin, flotillin, HlfK/C and podicin. Many of these band 7 domain-containing proteins are lipid raft-associated. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Microdomains formed from flotillin proteins may in addition be dynamic units with their own regulatory functions. Flotillins have been implicated in signal transduction, vesicle trafficking, cytoskeleton rearrangement and are known to interact with a variety of proteins. Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and participates in trafficking of Glut1 glucose transporters. Prohibitin may act as a chaperone for the stabilization of mitochondrial proteins. Prokaryotic H
Probab=99.83 E-value=1e-19 Score=154.26 Aligned_cols=160 Identities=16% Similarity=0.198 Sum_probs=132.3
Q ss_pred hhcccEEEecCCeEEEEEccccCccceeeCCcceEEcc----ccC---------------ccEEEeeeeeeeee------
Q 022958 33 AAANSLYNVEGGHRAIMFNRITGVKDKVYPEGTHLMVP----WFE---------------RPVIYDVRARPHLV------ 87 (289)
Q Consensus 33 ~~~~~~~~V~~g~~gVv~~r~gg~~~~~~~pG~~~~~P----~~~---------------~v~~~~~~~~~~~~------ 87 (289)
+..+|.++|++||.||++ ++|+. .++++||.|+.+| ++. .++.++.+.+....
T Consensus 11 i~~~s~~iV~e~~~av~~-~~Gk~-~~~~~~g~~~~~~~~~p~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 88 (207)
T cd03408 11 IKNGSQLIVREGQAAVFV-NEGKV-ADVFAPGGYYLTTNNLPVLAFLLSGDKGFSSPFKGEVYFFNTRVFTDLLWGTPAP 88 (207)
T ss_pred cccCCEEEEcCCcEEEEE-ECCEE-EEEecCCcceeeecCccHHHHhcChhhhCcCCceeEEEEEECEEEeccccCCCCC
Confidence 356799999999999998 78554 5678888776654 332 25667777654421
Q ss_pred -eecccccCCcEEEEEEEEEeecCCCCHHHHHHHhCcc-------ccccccchHHHHHHHHHHhhcChhHHhhh--HHHH
Q 022958 88 -ESTSGSRDLQMVKIGLRVLTRPVADKLPTVYRALGEN-------YNERVLPSIIHETLKAVVAQYNASQLITQ--RETV 157 (289)
Q Consensus 88 -~~~~~T~D~~~v~v~~~v~y~i~~~~~~~~~~~~g~~-------~~~~~l~~~~~~~lr~~~~~~~~~ei~~~--R~~i 157 (289)
.....|+|++++.+++++.|+ +.|+..++.+++.. .....+.+.+++++|++++++++++++.+ |+++
T Consensus 89 ~~~~~~~~~~v~v~v~~~~~~k--I~Dp~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~lr~~i~~~~~~~l~~~~~r~~i 166 (207)
T cd03408 89 VFGRDSEFGGVPLRAFGTYSLK--VTDPVLFVTNIVGTRGLFTVEDLEKSLRALIVAALSSALSESGLAVMLLAANRDEL 166 (207)
T ss_pred eeeeCCccceEEEEeeEEEEEE--EcCHHHHHHHhcCCCcceeHHHHHHHHHHHHHHHHHHHHHhcCCeeEEhhhhHHHH
Confidence 223568899999999999999 57888999888532 35668999999999999999999999986 9999
Q ss_pred HHHHHHHHHHHhhcCCeEEEEEEeeccccCHHHHHHHHH
Q 022958 158 SREIRKILTERAANFNIALDDVSITSLTFGKEFTSAIEA 196 (289)
Q Consensus 158 ~~~v~~~l~~~l~~~Gi~v~~v~I~~i~~p~~~~~aie~ 196 (289)
++.+++.+++.+.+||++|.++.|++|++|+++++++.+
T Consensus 167 ~~~v~~~l~~~~~~~Gi~i~~v~I~~i~~p~e~~~ai~~ 205 (207)
T cd03408 167 SKAVREALAPWFASFGLELVSVYIESISYPDEVQKLIDK 205 (207)
T ss_pred HHHHHHHHHHHHHhcCcEEEEEEEEeecCCHHHHHHHHh
Confidence 999999999999999999999999999999999999864
No 22
>COG2268 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.81 E-value=2.9e-18 Score=159.39 Aligned_cols=167 Identities=16% Similarity=0.233 Sum_probs=135.3
Q ss_pred HHHHhhcccEEEecCCeEEEEEc-ccc------CccceeeCCcceEEccccCccEEEeeeeeeeeee-ecccccCCcEEE
Q 022958 29 IGLYAAANSLYNVEGGHRAIMFN-RIT------GVKDKVYPEGTHLMVPWFERPVIYDVRARPHLVE-STSGSRDLQMVK 100 (289)
Q Consensus 29 ~~~~~~~~~~~~V~~g~~gVv~~-r~g------g~~~~~~~pG~~~~~P~~~~v~~~~~~~~~~~~~-~~~~T~D~~~v~ 100 (289)
++++|+...+|++.+...+++.+ +|. |....++.+|+||++|+++...+++.+..++++. ..+.|+||.+++
T Consensus 25 lv~if~~~~~y~~a~~~~aLI~~g~~~g~~~~~g~~~~vV~gGg~~v~Pi~q~~~r~~l~~i~l~v~~~~v~t~Dg~p~~ 104 (548)
T COG2268 25 LVLIFFGKRFYIIARPNEALIRTGSKLGSKDEAGGGQKVVRGGGAIVMPIFQTIERMSLTTIKLEVEIDNVYTKDGMPLN 104 (548)
T ss_pred HHHHHHhheeEEecCCCceEEEeccccCCcccccCCccEEecCceEEecceeeeEEeeeeeeeeeeeeeeeEecCCCccc
Confidence 33333334566554444445432 221 5556799999999999999999999999999888 569999999999
Q ss_pred EEEEEEeecCC--CCHHHHHHHhCcc----ccccccchHHHHHHHHHHhhcChhHHhhhHHHHHHHHHHHHHHHhhcCCe
Q 022958 101 IGLRVLTRPVA--DKLPTVYRALGEN----YNERVLPSIIHETLKAVVAQYNASQLITQRETVSREIRKILTERAANFNI 174 (289)
Q Consensus 101 v~~~v~y~i~~--~~~~~~~~~~g~~----~~~~~l~~~~~~~lr~~~~~~~~~ei~~~R~~i~~~v~~~l~~~l~~~Gi 174 (289)
+++.++.++.. .+...+..++|.. .....+...+++.+|.+++++++.++.++|..|++.+...+..+|.+.|+
T Consensus 105 v~~~a~v~i~~~~~dI~~aae~~g~Kg~~~~l~~~~~~~l~~~lR~i~a~~t~~el~edR~~F~~~V~~~v~~dL~k~Gl 184 (548)
T COG2268 105 VEAVAYVKIGDTFQDIATAAERFGGKGSREDLEQLAEDTLEGALRAVLAQMTVEELNEDRLGFAQVVQEVVGDDLSKMGL 184 (548)
T ss_pred eeEEEEEEecCCHHHHHHHHHHhccccCHHHHHHHHHHHHHHHHHHHHHhcCHHHHhhHHhhHHHHHHHHHHHHHHhcCe
Confidence 99999999732 2445666666644 56677889999999999999999999999999999999999999999999
Q ss_pred EEEEEEeeccccC-------HHHHHHHH
Q 022958 175 ALDDVSITSLTFG-------KEFTSAIE 195 (289)
Q Consensus 175 ~v~~v~I~~i~~p-------~~~~~aie 195 (289)
.+.++.|.++..+ ..|.++.=
T Consensus 185 ~l~s~~I~~i~d~~~~~~d~~~yLda~G 212 (548)
T COG2268 185 VLDSLAINDINDTSKENQDPNNYLDALG 212 (548)
T ss_pred eeeeeeecccccccccccChhhhhhhcC
Confidence 9999999999998 88888873
No 23
>KOG2668 consensus Flotillins [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=99.71 E-value=5.7e-15 Score=128.44 Aligned_cols=153 Identities=12% Similarity=0.187 Sum_probs=129.2
Q ss_pred EEEecCCeEEEEEccccCccceeeCCcceEEccccCccEEEeeeeeeeeeeec-ccccCCcEEEEEEEEEeecCCCCHHH
Q 022958 38 LYNVEGGHRAIMFNRITGVKDKVYPEGTHLMVPWFERPVIYDVRARPHLVEST-SGSRDLQMVKIGLRVLTRPVADKLPT 116 (289)
Q Consensus 38 ~~~V~~g~~gVv~~r~gg~~~~~~~pG~~~~~P~~~~v~~~~~~~~~~~~~~~-~~T~D~~~v~v~~~v~y~i~~~~~~~ 116 (289)
|++..+.+..++. . ||.....+-+| .|.+|| +++.++|+++-++++... +.|+.|+|+.+.+.++..+..+++..
T Consensus 2 f~~~~~~~~l~it-g-~g~~~~~lv~~-~wvf~w-q~~q~~~ln~mtl~~~~e~v~tsegvP~~vtgVaqvki~~~~~~e 77 (428)
T KOG2668|consen 2 FKVAGASQYLAIT-G-GGIEDIKLVKK-SWVFPW-QQCTVFDVSPMTLTFKVENVMTSEGVPFVVTGVAQVKIRVDDADE 77 (428)
T ss_pred CccCCccceEEee-c-ccccCceeccc-ceeeee-eeeeEEeecceeeeeecchhhcccCCceEeeeeEEEeeccCCHHH
Confidence 4566788887885 2 45555556666 477889 999999999999999886 99999999999999999998888654
Q ss_pred HHHH-----hC--ccccccccchHHHHHHHHHHhhcChhHHhhhHHHHHHHHHHHHHHHhhcCCeEEEEEEeeccccCH-
Q 022958 117 VYRA-----LG--ENYNERVLPSIIHETLKAVVAQYNASQLITQRETVSREIRKILTERAANFNIALDDVSITSLTFGK- 188 (289)
Q Consensus 117 ~~~~-----~g--~~~~~~~l~~~~~~~lr~~~~~~~~~ei~~~R~~i~~~v~~~l~~~l~~~Gi~v~~v~I~~i~~p~- 188 (289)
+... +| .+....++...+++..|.+++++|++|+|.+|.+|.+.+.+..+.++.++||+|.+++|+|+...+
T Consensus 78 lL~~A~e~flgK~~~eIn~~vl~tlEGh~Rai~asmTvEEIyKdrk~F~k~Vfeva~~dl~~mGi~I~s~tiKdl~D~~g 157 (428)
T KOG2668|consen 78 LLLYACEQFLGKSSNEINELVLGTLEGHTRAILASMTVEEIYKDRKEFKKEVFEVAQLDLGQMGIVIYSATIKDLVDVPG 157 (428)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHhhhHHHHHHHhccHHHHHhhHHHHHHHHHHHhhhhhhhcceEEEEeEhhhhhcccc
Confidence 4322 23 456667788889999999999999999999999999999999999999999999999999998877
Q ss_pred -HHHHHH
Q 022958 189 -EFTSAI 194 (289)
Q Consensus 189 -~~~~ai 194 (289)
+|..++
T Consensus 158 ~~YlssL 164 (428)
T KOG2668|consen 158 HEYLSSL 164 (428)
T ss_pred hHHHHHh
Confidence 688777
No 24
>cd03399 Band_7_flotillin Band_7_flotillin: a subgroup of the band 7 domain of flotillin (reggie) like proteins. This subgroup contains proteins similar to stomatin, prohibitin, flotillin, HlfK/C and podicin. These two proteins are lipid raft-associated. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Microdomains formed from flotillin proteins may in addition be dynamic units with their own regulatory functions. Flotillins have been implicated in signal transduction, vesicle trafficking, cytoskeleton rearrangement and, interact with a variety of proteins. Flotillins may play a role in the progression of prion disease, in the pathogenesis of neurodegenerative diseases such as Parkinson's and Alzheimer's disease and, in cancer invasion and metastasis.
Probab=99.71 E-value=8.2e-17 Score=126.17 Aligned_cols=115 Identities=14% Similarity=0.215 Sum_probs=99.5
Q ss_pred Eeeeeeeeeeee-cccccCCcEEEEEEEEEeecCCCCHHH----HHHHhC---ccccccccchHHHHHHHHHHhhcChhH
Q 022958 78 YDVRARPHLVES-TSGSRDLQMVKIGLRVLTRPVADKLPT----VYRALG---ENYNERVLPSIIHETLKAVVAQYNASQ 149 (289)
Q Consensus 78 ~~~~~~~~~~~~-~~~T~D~~~v~v~~~v~y~i~~~~~~~----~~~~~g---~~~~~~~l~~~~~~~lr~~~~~~~~~e 149 (289)
++.+.+.++++. .+.|+|++++.+++++.||| .++.. ++.+++ .+.....+.+.+++++|+++|+++++|
T Consensus 2 ~~lr~~~~~~~~q~v~TkD~~~v~vd~~~~~rV--~d~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~lR~~ig~~tl~e 79 (128)
T cd03399 2 LSLTSMVLRVGSEAVITRDGVRVDVTAVFQVKV--GGTEEAIATAAERFLGKSEEEIEELVKEVLEGHLRAVVGTMTVEE 79 (128)
T ss_pred ccccceeeeccccceecCCCcEEEEEEEEEEEe--CCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhCCHHH
Confidence 466777888876 48999999999999999996 44343 334443 255788899999999999999999999
Q ss_pred HhhhHHHHHHHHHHHHHHHhhcCCeEEEEEEeeccccCHHHHHHH
Q 022958 150 LITQRETVSREIRKILTERAANFNIALDDVSITSLTFGKEFTSAI 194 (289)
Q Consensus 150 i~~~R~~i~~~v~~~l~~~l~~~Gi~v~~v~I~~i~~p~~~~~ai 194 (289)
++++|++|.+++.+.++..+++||++|.++.|++|++|+.+.+++
T Consensus 80 l~~~R~~i~~~i~~~v~~~~~~~Gi~i~~v~I~~i~~~~~~~~~~ 124 (128)
T cd03399 80 IYEDRDKFAEQVQEVVAPDLNKMGLELDSFTIKDITDTDGYLNNL 124 (128)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHCCCEEEEEeeEEecCCCCCHHHc
Confidence 999999999999999999999999999999999999999988765
No 25
>cd02106 Band_7 The band 7 domain of flotillin (reggie) like proteins. This group contains proteins similar to stomatin, prohibitin, flotillin, HlfK/C and podicin. Many of these band 7 domain-containing proteins are lipid raft-associated. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Microdomains formed from flotillin proteins may in addition be dynamic units with their own regulatory functions. Flotillins have been implicated in signal transduction, vesicle trafficking, cytoskeleton rearrangement and are known to interact with a variety of proteins. Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and participates in trafficking of Glut1 glucose transporters. Prohibitin may act as a chaperone for the stabilization of mitochondrial proteins. Prokaryotic HflK/C plays a role i
Probab=99.55 E-value=7.6e-14 Score=107.27 Aligned_cols=105 Identities=20% Similarity=0.305 Sum_probs=92.3
Q ss_pred cccccCCcEEEEEEEEEeecCCCCHHHHHHHhC-ccccccccchHHHHHHHHHHhhcChhHHhhhHHHHHHHHHHHHHHH
Q 022958 90 TSGSRDLQMVKIGLRVLTRPVADKLPTVYRALG-ENYNERVLPSIIHETLKAVVAQYNASQLITQRETVSREIRKILTER 168 (289)
Q Consensus 90 ~~~T~D~~~v~v~~~v~y~i~~~~~~~~~~~~g-~~~~~~~l~~~~~~~lr~~~~~~~~~ei~~~R~~i~~~v~~~l~~~ 168 (289)
.+.|+|++++++++++.|+| +++..++.+++ ..+ ...+.+.+.+++|+.+++++++++.++|+++++.+++.+...
T Consensus 15 ~~~t~d~~~i~~~~~~~~~v--~~~~~~~~~~~~~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~r~~i~~~v~~~l~~~ 91 (121)
T cd02106 15 EVLTKDNVPVRVDAVVQYRV--VDPVKALYNVRDPED-EEALRQLAQSALRSVIGKMTLDELLEDRDEIAAEVREALQED 91 (121)
T ss_pred eEEecCCCEEEEEEEEEEEE--eCHHHHHHhcCCccH-HHHHHHHHHHHHHHHHccccHHHHHhhHHHHHHHHHHHHHHH
Confidence 47899999999999999996 44443333333 333 678999999999999999999999999999999999999999
Q ss_pred hhcCCeEEEEEEeeccccCHHHHHHHHHH
Q 022958 169 AANFNIALDDVSITSLTFGKEFTSAIEAK 197 (289)
Q Consensus 169 l~~~Gi~v~~v~I~~i~~p~~~~~aie~~ 197 (289)
+++||+++.++.|.++.+|+++.++++++
T Consensus 92 ~~~~Gi~i~~v~i~~i~~~~~~~~ai~~~ 120 (121)
T cd02106 92 LDKYGIEVVDVRIKDIDPPEEVQEAMEDR 120 (121)
T ss_pred HHhcCCEEEEEEEEecCCCHHHHHHHHhh
Confidence 99999999999999999999999999754
No 26
>PF13421 Band_7_1: SPFH domain-Band 7 family
Probab=99.41 E-value=1.2e-11 Score=104.49 Aligned_cols=161 Identities=16% Similarity=0.170 Sum_probs=121.1
Q ss_pred hcccEEEecCCeEEEEEccccCccceeeCCcceEE-------------------ccccCccEEEeeeeee-eeeee----
Q 022958 34 AANSLYNVEGGHRAIMFNRITGVKDKVYPEGTHLM-------------------VPWFERPVIYDVRARP-HLVES---- 89 (289)
Q Consensus 34 ~~~~~~~V~~g~~gVv~~r~gg~~~~~~~pG~~~~-------------------~P~~~~v~~~~~~~~~-~~~~~---- 89 (289)
-.+|-.+|++||.+|++ + .|....+++||.|-. .||-..|+.++++... ..+..
T Consensus 12 ~~GS~LiV~egQ~Avfv-~-~G~i~d~~~pG~y~l~T~n~P~l~~l~~~~~Gg~spf~~eVyFvn~~~~~~~kwGT~~pi 89 (211)
T PF13421_consen 12 KNGSQLIVREGQCAVFV-N-DGKIADVFGPGRYTLDTDNIPILSTLKNWKFGGESPFKAEVYFVNTKEITNIKWGTPNPI 89 (211)
T ss_pred cCCCEEEECCCCEEEEE-E-CCEEEEEecCceEEEecCCchHHHHHhhhccCCCCCceEEEEEEECeEecCCccCCCCCe
Confidence 35778899999999998 4 454444999999963 2444456666666542 22221
Q ss_pred cccccCCcEEEEEEEEEeecCCCCHHHHHHHhC-------ccccccccchHHHHHHHHHHhh--cChhHHhhhHHHHHHH
Q 022958 90 TSGSRDLQMVKIGLRVLTRPVADKLPTVYRALG-------ENYNERVLPSIIHETLKAVVAQ--YNASQLITQRETVSRE 160 (289)
Q Consensus 90 ~~~T~D~~~v~v~~~v~y~i~~~~~~~~~~~~g-------~~~~~~~l~~~~~~~lr~~~~~--~~~~ei~~~R~~i~~~ 160 (289)
.....+...|.+.+.-.|.+++.|+..|+.++. .+...+.+++.+.+.+-+.+++ +++.|+-++..+|++.
T Consensus 90 ~~~D~~~~~v~lra~G~ys~rI~Dp~~F~~~~vg~~~~~~~~~i~~~l~~~i~~~i~~~l~~~~~~~~~i~a~~~eis~~ 169 (211)
T PF13421_consen 90 PYRDPEYGPVRLRAFGTYSFRIVDPVLFIRNLVGTQSEFTTEEINEQLRSEIVQAIADALAESKISILDIPAHLDEISEA 169 (211)
T ss_pred eecCCCCCcEEEEEEEEEEEEEeCHHHHHHhhCCCCCcccHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 122333446777777777777899999998864 2344556666666667777764 7899999999999999
Q ss_pred HHHHHHHHhhcCCeEEEEEEeeccccCHHHHHHHHH
Q 022958 161 IRKILTERAANFNIALDDVSITSLTFGKEFTSAIEA 196 (289)
Q Consensus 161 v~~~l~~~l~~~Gi~v~~v~I~~i~~p~~~~~aie~ 196 (289)
+++.|++.++.+|+++.++.|.+|.+|++.++++++
T Consensus 170 ~~~~l~~~~~~~Gi~l~~f~I~~i~~pee~~~~i~~ 205 (211)
T PF13421_consen 170 LKEKLNPEFERYGIELVDFGIESISFPEEVQKAIDK 205 (211)
T ss_pred HHHHHHHHHHhcCcEEEEEEEEeecCCHHHHHHHHH
Confidence 999999999999999999999999999999999953
No 27
>COG4260 Membrane protease subunit, stomatin/prohibitin family [Amino acid transport and metabolism]
Probab=98.86 E-value=9.6e-08 Score=81.76 Aligned_cols=159 Identities=13% Similarity=0.111 Sum_probs=116.6
Q ss_pred cccEEEecCCeEEEEEccccCccceeeC-CcceE-------------------EccccCccEEEeeeeee-eeeee----
Q 022958 35 ANSLYNVEGGHRAIMFNRITGVKDKVYP-EGTHL-------------------MVPWFERPVIYDVRARP-HLVES---- 89 (289)
Q Consensus 35 ~~~~~~V~~g~~gVv~~r~gg~~~~~~~-pG~~~-------------------~~P~~~~v~~~~~~~~~-~~~~~---- 89 (289)
-+|...|.|++.++.++ ||....+.. +|.|- ..|+-+.|+.++++.+. +.+..
T Consensus 38 nGs~l~Vrp~qmamfvn--~G~I~dvf~e~G~y~v~~~t~P~L~tlk~~kfgf~sp~k~eVyfvntqe~~girwGT~qpi 115 (345)
T COG4260 38 NGSILHVRPNQMAMFVN--GGQIADVFAEAGYYKVTTQTLPSLFTLKRFKFGFESPFKQEVYFVNTQEIKGIRWGTPQPI 115 (345)
T ss_pred cCcEEEEecCceEEEEc--CCEEEeeecCCceeEeeecccchhhhhhcceecCCCcccceEEEEecceecceecCCCCCe
Confidence 46778899999999986 676555554 77542 24455677778887765 44432
Q ss_pred cccc-cCCcEEEEEEEEEeecCCCCHHHHHHHhC-------ccccccccchHHHHHHHHHHhhc--ChhHHhhhHHHHHH
Q 022958 90 TSGS-RDLQMVKIGLRVLTRPVADKLPTVYRALG-------ENYNERVLPSIIHETLKAVVAQY--NASQLITQRETVSR 159 (289)
Q Consensus 90 ~~~T-~D~~~v~v~~~v~y~i~~~~~~~~~~~~g-------~~~~~~~l~~~~~~~lr~~~~~~--~~~ei~~~R~~i~~ 159 (289)
+... .++--+-+.+.-.|.+++.|+..+++.+. .++.+..+-+.+..+|...+.++ ....+-.+.-++++
T Consensus 116 n~~dn~~~g~l~lRa~Gtys~kvtDpi~fi~~I~g~~dvy~v~di~~q~ls~~m~al~tai~q~G~~~~~ltan~~elsk 195 (345)
T COG4260 116 NYFDNFYNGELFLRAHGTYSIKVTDPILFIQQIPGNRDVYTVDDINQQYLSEFMGALATAINQSGVRFSFLTANQMELSK 195 (345)
T ss_pred ecccccccceeEEeecceEEEEecCHHHHHHhccCCCceEEHHHHHHHHHHHHHHHHHHHHHhcCceehhhhhhHHHHHH
Confidence 2222 45555666666666666899998888764 23445556677777777777765 34444568899999
Q ss_pred HHHHHHHHHhhcCCeEEEEEEeeccccCHHHHHHHH
Q 022958 160 EIRKILTERAANFNIALDDVSITSLTFGKEFTSAIE 195 (289)
Q Consensus 160 ~v~~~l~~~l~~~Gi~v~~v~I~~i~~p~~~~~aie 195 (289)
.+++.|.+++..+|..|.+|+|.+|++|++.+..|+
T Consensus 196 ~m~e~Ld~q~~q~Gm~v~sfqvaSisypde~Q~lin 231 (345)
T COG4260 196 YMAEVLDEQWTQYGMAVDSFQVASISYPDESQALIN 231 (345)
T ss_pred HHHHHHhHHHHhhCceEeeEEEEEecCcHHHHHHHH
Confidence 999999999999999999999999999999999995
No 28
>PTZ00491 major vault protein; Provisional
Probab=98.25 E-value=0.00022 Score=70.44 Aligned_cols=155 Identities=11% Similarity=0.067 Sum_probs=98.7
Q ss_pred EEecCCeEEEEEccccCccceeeCCcceEEccccCccEEEeeee---------eeeee---------eecccccCCcEEE
Q 022958 39 YNVEGGHRAIMFNRITGVKDKVYPEGTHLMVPWFERPVIYDVRA---------RPHLV---------ESTSGSRDLQMVK 100 (289)
Q Consensus 39 ~~V~~g~~gVv~~r~gg~~~~~~~pG~~~~~P~~~~v~~~~~~~---------~~~~~---------~~~~~T~D~~~v~ 100 (289)
|.||-+...-+++.--+..+.+++|-+.+.-|- +.+..++++- +.+.+ ...+-|+|...+.
T Consensus 465 ~~vphn~avqvydyk~~~~Rvv~GP~~v~L~pd-E~ftvlsLSgg~PK~~n~i~~l~l~lGPdf~tD~i~vET~DhArL~ 543 (850)
T PTZ00491 465 YKVPHNAAVQLYDYKTKKSRVVFGPDLVMLEPD-EEFTVLSLSGGKPKVPNQIHSLHLFLGPDFMTDVIHVETSDHARLA 543 (850)
T ss_pred EEcCCCcEEEEEEcccCceEEEECCceEEecCC-CceEEEEecCCCCCCcchhhhhhhhhCCccceeEEEEEEcccceEE
Confidence 456666555454322244566889999998887 5666665532 11111 0136799999999
Q ss_pred EEEEEEeecC--CCCHHHHHHHhCccccccccchHHHHHHHHHHhhcChhHHhhhHHH-HHHHHHHHH------HH--Hh
Q 022958 101 IGLRVLTRPV--ADKLPTVYRALGENYNERVLPSIIHETLKAVVAQYNASQLITQRET-VSREIRKIL------TE--RA 169 (289)
Q Consensus 101 v~~~v~y~i~--~~~~~~~~~~~g~~~~~~~l~~~~~~~lr~~~~~~~~~ei~~~R~~-i~~~v~~~l------~~--~l 169 (289)
++.+..|+++ .+|+.+.-.-|...++-...-..+.+-+|..+++.+.++++.+-.. |.+.+.-.. ++ .|
T Consensus 544 l~LsYnW~F~v~~~d~~~~~k~Fsv~DFvGd~Ck~iaSrIR~aVA~~~Fd~FHknsa~iiR~aVFg~~~e~~~~r~~l~F 623 (850)
T PTZ00491 544 LQLSYNWYFDVTDGNPEDAQKCFSVPDFVGDACKTIASRVRAAVASEPFDEFHKNSAKIIRQAVFGSNDETGEVRDSLRF 623 (850)
T ss_pred EEEEEEEEEecCCCChhhHhheeccCchHHHHHHHHHHHHHHHHhcCCHHHHhccHHHHHHHHhccCcCCCCccccceEE
Confidence 9999998865 3444322222234333334678899999999999999999975433 333333311 12 23
Q ss_pred hcCCeEEEEEEeeccccCHH-HHHHH
Q 022958 170 ANFNIALDDVSITSLTFGKE-FTSAI 194 (289)
Q Consensus 170 ~~~Gi~v~~v~I~~i~~p~~-~~~ai 194 (289)
...|+.|.+|.|+++.|-++ .++++
T Consensus 624 ~~N~lvit~VDvqsvEpvD~~tr~~L 649 (850)
T PTZ00491 624 PANNLVITNVDVQSVEPVDERTRDSL 649 (850)
T ss_pred ccCCeEEEEEeeeeeeecCHHHHHHH
Confidence 57799999999999998554 55555
No 29
>PF12127 YdfA_immunity: SigmaW regulon antibacterial; InterPro: IPR022853 This entry represents the uncharacterised protein family UPF0365. Its function is not known. The proteins in this family are found in bacteria. They are about 330 amino acids in length and encoded by a gene located in an operon which confers immunity for the host species to a broad range of antibacterial compounds, unlike the specific immunity proteins that are linked to and co-regulated with their antibiotic-synthesis proteins.
Probab=97.74 E-value=0.00045 Score=59.43 Aligned_cols=175 Identities=15% Similarity=0.280 Sum_probs=107.3
Q ss_pred Eeeeeeeeeeee-cccccCCcEEEEEEEEEeecCCCCHHHHHHHhCccccccccchHHHHHHHHHHhhcChhHHhhhHHH
Q 022958 78 YDVRARPHLVES-TSGSRDLQMVKIGLRVLTRPVADKLPTVYRALGENYNERVLPSIIHETLKAVVAQYNASQLITQRET 156 (289)
Q Consensus 78 ~~~~~~~~~~~~-~~~T~D~~~v~v~~~v~y~i~~~~~~~~~~~~g~~~~~~~l~~~~~~~lr~~~~~~~~~ei~~~R~~ 156 (289)
.++.+..++.|. ....+||..+.+.+.++.| .+...+. |....++++.+.=+..+-.+-+.-+-.+++++-+.
T Consensus 120 ~SVnPkVI~~P~i~aVAkdGIql~~kArVTVR---aNi~rLV---GGAgEeTIiARVGEgIVttiGSa~~hk~VLEnPd~ 193 (316)
T PF12127_consen 120 TSVNPKVIDTPTIAAVAKDGIQLKVKARVTVR---ANIDRLV---GGAGEETIIARVGEGIVTTIGSAESHKEVLENPDS 193 (316)
T ss_pred cccCCeeecCcchhhhhcCCeEEEEEEEEEEE---ecHHHhc---cCCCcHHHHHHHccceeeeeccchhHHHHhcCHHH
Confidence 334444444443 3668999999999999999 4444444 77777777777777777777778889999999999
Q ss_pred HHHHHHHHHHHHh-hcCCeEEEEEEeeccccCHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHH--h--
Q 022958 157 VSREIRKILTERA-ANFNIALDDVSITSLTFGKEFTSAIEA------KQVAAQEAERAKYIVEKAEQDKRSAIIR--A-- 225 (289)
Q Consensus 157 i~~~v~~~l~~~l-~~~Gi~v~~v~I~~i~~p~~~~~aie~------~~~a~q~~~~a~~~i~~A~aea~~~~~~--A-- 225 (289)
|++.+.+. -| .+.-++|.++.|-|++.-+++-..++. +.+|+..+|.-+......|+|-.+++.+ |
T Consensus 194 ISk~VL~k---gLDagTAFeIlSIDIaDidVG~NIGA~Lq~dQAeADk~iAqAkAEeRRA~AvA~EQEm~A~vqe~rAkv 270 (316)
T PF12127_consen 194 ISKTVLEK---GLDAGTAFEILSIDIADIDVGENIGAKLQTDQAEADKRIAQAKAEERRAMAVAREQEMKAKVQEMRAKV 270 (316)
T ss_pred HHHHHHhh---CCCcCceeEEEEeeeeccccchhhchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHh
Confidence 99877653 44 345699999999999999988766632 2222222222221111222222222211 1
Q ss_pred -hhHHHHHHHHHHHhhcC----hhhHHHHHHHHHHHHHHHh
Q 022958 226 -QGEATSAQLIGQAIANN----PAFITLRKIEAAREIAQTI 261 (289)
Q Consensus 226 -~aeaea~~~~~~a~~~~----p~~~~~~~~e~~~~i~~~~ 261 (289)
++|++--+.+++++++- -+|+.++-+++-.+|-+++
T Consensus 271 VeAeaevP~A~aeAfr~G~lGvmDYy~~~Ni~aDT~MR~si 311 (316)
T PF12127_consen 271 VEAEAEVPLAMAEAFRSGNLGVMDYYNLKNIQADTEMRESI 311 (316)
T ss_pred eehhhhchHHHHHHHHcCCCcchhhhhhhcccccchHHHhc
Confidence 14555556677777532 2345555555555554444
No 30
>PRK13665 hypothetical protein; Provisional
Probab=97.44 E-value=0.002 Score=55.21 Aligned_cols=109 Identities=12% Similarity=0.205 Sum_probs=81.3
Q ss_pred Eeeeeeeeeeee-cccccCCcEEEEEEEEEeecCCCCHHHHHHHhCccccccccchHHHHHHHHHHhhcChhHHhhhHHH
Q 022958 78 YDVRARPHLVES-TSGSRDLQMVKIGLRVLTRPVADKLPTVYRALGENYNERVLPSIIHETLKAVVAQYNASQLITQRET 156 (289)
Q Consensus 78 ~~~~~~~~~~~~-~~~T~D~~~v~v~~~v~y~i~~~~~~~~~~~~g~~~~~~~l~~~~~~~lr~~~~~~~~~ei~~~R~~ 156 (289)
.++.++.++.|. ....+||..+.+.+.++.| .+...+. |....++++.+.=+..+-.+-+.-+-.+++++.+.
T Consensus 125 ~SVnPkVI~~P~i~aVAkdGIql~~kARVTVR---aNi~rLV---GGAgEeTIiARVGEgIVttIGSa~~hk~VLEnPd~ 198 (316)
T PRK13665 125 MSVNPKVIETPFIAAVAKDGIEVKAKARVTVR---ANIDRLV---GGAGEETIIARVGEGIVSTIGSSESHKEVLENPDS 198 (316)
T ss_pred cccCCeeecCCcchhhcccCeEEEEEEEEEee---hhHHHHh---CCCcceeeEeeecCceeecccCcchHHHHhcCHHH
Confidence 334444444443 3668999999999999998 4444444 77777777777777777777778889999999999
Q ss_pred HHHHHHHHHHHHhh-cCCeEEEEEEeeccccCHHHHHHHH
Q 022958 157 VSREIRKILTERAA-NFNIALDDVSITSLTFGKEFTSAIE 195 (289)
Q Consensus 157 i~~~v~~~l~~~l~-~~Gi~v~~v~I~~i~~p~~~~~aie 195 (289)
|++.+.+ .-|+ +.-++|.++.|-|++..+++-..++
T Consensus 199 ISk~VL~---kGLDagTAFeIlSIDIADvdVG~NIGA~Lq 235 (316)
T PRK13665 199 ISKTVLS---KGLDAGTAFEILSIDIADVDVGKNIGAKLQ 235 (316)
T ss_pred HHHHHHh---ccCCcCceeEEEEEeeeccccchhhchhhh
Confidence 9965543 4453 4569999999999999998876663
No 31
>COG1580 FliL Flagellar basal body-associated protein [Cell motility and secretion]
Probab=97.13 E-value=0.026 Score=45.47 Aligned_cols=80 Identities=16% Similarity=0.194 Sum_probs=60.6
Q ss_pred CcEEEEEEEEEeecCCCCHHHHHHHhCccccccccchHHHHHHHHHHhhcChhHHhh--hHHHHHHHHHHHHHHHhhcCC
Q 022958 96 LQMVKIGLRVLTRPVADKLPTVYRALGENYNERVLPSIIHETLKAVVAQYNASQLIT--QRETVSREIRKILTERAANFN 173 (289)
Q Consensus 96 ~~~v~v~~~v~y~i~~~~~~~~~~~~g~~~~~~~l~~~~~~~lr~~~~~~~~~ei~~--~R~~i~~~v~~~l~~~l~~~G 173 (289)
+-...+.+.+.|++.-+.. ...+.. =.+.+++.+...+++.+.+|+.+ .++++.+++++.+++.+..-+
T Consensus 76 ~~~~~v~i~i~l~~~n~~~---~~el~~------~~p~vrd~li~lfsskt~~eL~t~~Gke~Lk~ei~~~in~~L~~g~ 146 (159)
T COG1580 76 PKDRYVKIAITLEVANKAL---LEELEE------KKPEVRDALLMLFSSKTAAELSTPEGKEKLKAEIKDRINTILKEGQ 146 (159)
T ss_pred CCcEEEEEEEEEeeCCHHH---HHHHHH------hhHHHHHHHHHHHHhCCHHHhcCchhHHHHHHHHHHHHHHHHhcCC
Confidence 4566778888898533322 322211 25789999999999999999996 899999999999999998755
Q ss_pred eEEEEEEeeccc
Q 022958 174 IALDDVSITSLT 185 (289)
Q Consensus 174 i~v~~v~I~~i~ 185 (289)
.|.+|...++.
T Consensus 147 -~V~dV~fT~fi 157 (159)
T COG1580 147 -VVKDVLFTNFI 157 (159)
T ss_pred -eeEEEeeehhh
Confidence 77777776643
No 32
>PRK12785 fliL flagellar basal body-associated protein FliL; Reviewed
Probab=95.49 E-value=0.81 Score=37.24 Aligned_cols=52 Identities=10% Similarity=0.109 Sum_probs=42.6
Q ss_pred chHHHHHHHHHHhhcChhHHhh--hHHHHHHHHHHHHHHHhhcCCeEEEEEEeecc
Q 022958 131 PSIIHETLKAVVAQYNASQLIT--QRETVSREIRKILTERAANFNIALDDVSITSL 184 (289)
Q Consensus 131 ~~~~~~~lr~~~~~~~~~ei~~--~R~~i~~~v~~~l~~~l~~~Gi~v~~v~I~~i 184 (289)
.+.+++.+-..+++.+.+|+.+ .+..+.+++.+.++..+..- .|.+|.++++
T Consensus 110 ~p~Ird~i~~~Ls~~~~~~L~~~~Gk~~Lr~ei~~~in~~l~~~--~V~~VlFt~F 163 (166)
T PRK12785 110 MPRVTDAFQTYLRELRPSDLNGSAGLFRLKEELLRRVNVALAPA--QVNAVLFKEV 163 (166)
T ss_pred chHHHHHHHHHHHhCCHHHhcChHHHHHHHHHHHHHHHhhcCCC--ceeEEEEEee
Confidence 4778888899999999999985 79999999999999988753 3666666653
No 33
>COG4864 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.57 E-value=0.74 Score=38.79 Aligned_cols=94 Identities=12% Similarity=0.239 Sum_probs=63.8
Q ss_pred cccCCcEEEEEEEEEeecCCCCHHHHHHHhCccccccccchHHHHHHHHHHhhcChhHHhhhHHHHHHHHHHHHHHHh-h
Q 022958 92 GSRDLQMVKIGLRVLTRPVADKLPTVYRALGENYNERVLPSIIHETLKAVVAQYNASQLITQRETVSREIRKILTERA-A 170 (289)
Q Consensus 92 ~T~D~~~v~v~~~v~y~i~~~~~~~~~~~~g~~~~~~~l~~~~~~~lr~~~~~~~~~ei~~~R~~i~~~v~~~l~~~l-~ 170 (289)
..-||..|.....+..| .+...+ .|....++.+.+.=+..+..+-++..-.+++++.+.|++.+.. .-| .
T Consensus 139 vam~gievkakaritvr---ani~rl---vggageetviarvgegivstigss~~h~~vlenpd~isktvl~---kgld~ 209 (328)
T COG4864 139 VAMNGIEVKAKARITVR---ANIERL---VGGAGEETVIARVGEGIVSTIGSSDEHTKVLENPDSISKTVLE---KGLDS 209 (328)
T ss_pred eeccceEEEEEEEEEeh---hhHHHH---hCCCCchhhhhhhccceeeccCCCcchhhHhcCccHHHHHHHH---ccCCC
Confidence 35678877777777776 233333 3666666666555555555555667788889999888876654 233 2
Q ss_pred cCCeEEEEEEeeccccCHHHHHHH
Q 022958 171 NFNIALDDVSITSLTFGKEFTSAI 194 (289)
Q Consensus 171 ~~Gi~v~~v~I~~i~~p~~~~~ai 194 (289)
...+++.++.|-|++..+++-.-+
T Consensus 210 gtafeilsidiadvdigkniga~l 233 (328)
T COG4864 210 GTAFEILSIDIADVDIGKNIGAKL 233 (328)
T ss_pred CceeEEEEeeeecccccccccccc
Confidence 445899999999999988776544
No 34
>PRK06654 fliL flagellar basal body-associated protein FliL; Reviewed
Probab=93.55 E-value=3.2 Score=34.14 Aligned_cols=77 Identities=13% Similarity=0.207 Sum_probs=53.6
Q ss_pred CCcEEEEEEEEEeecCCCCHHHHHHHhCccccccccchHHHHHHHHHHhhcChhHHhhhHHHHHHHHHHHHHHHhhcCCe
Q 022958 95 DLQMVKIGLRVLTRPVADKLPTVYRALGENYNERVLPSIIHETLKAVVAQYNASQLITQRETVSREIRKILTERAANFNI 174 (289)
Q Consensus 95 D~~~v~v~~~v~y~i~~~~~~~~~~~~g~~~~~~~l~~~~~~~lr~~~~~~~~~ei~~~R~~i~~~v~~~l~~~l~~~Gi 174 (289)
++....+.+++.|. .++.. +..++.. =.+.+++.+...+++.+.+|+. ++.++.+++.+.+|..|.+-.
T Consensus 99 ~~~r~~vki~l~~e--~~d~~-l~~EL~~------r~pqIRD~Ii~~LssKt~~eL~-Gk~~LKeEI~~rIN~iL~~Gk- 167 (181)
T PRK06654 99 PPKTFVVKLALGYA--ENNKN-ILNELGR------RKVRLKDIIREYFSQKTGQELK-NESQIKAEIKARINSILRNGE- 167 (181)
T ss_pred CCceEEEEEEEEEE--cCCHH-HHHHHHh------ccHHHHHHHHHHHHhCCHHHHc-CHHHHHHHHHHHHHHhcCCCc-
Confidence 33444567777777 34433 3332211 2577899999999999999999 889999999999998887532
Q ss_pred EEEEEEeec
Q 022958 175 ALDDVSITS 183 (289)
Q Consensus 175 ~v~~v~I~~ 183 (289)
|.+|.+++
T Consensus 168 -V~~VYFTe 175 (181)
T PRK06654 168 -IKDIAFTQ 175 (181)
T ss_pred -eEEEEEEE
Confidence 44444443
No 35
>cd03404 Band_7_HflK Band_7_HflK: The band 7 domain of flotillin (reggie) like proteins. This group includes proteins similar to prokaryotic HlfK (High frequency of lysogenization K). Although many members of the band 7 family are lipid raft associated, prokaryote plasma membranes lack cholesterol and are unlikely to have lipid raft domains. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Escherichia coli HflK is an integral membrane protein which may localize to the plasma membrane. HflK associates with another band 7 family member (HflC) to form an HflKC complex. HflKC interacts with FtsH in a large complex termed the FtsH holo-enzyme. FtsH is an AAA ATP-dependent protease which exerts progressive proteolysis against membrane-embedded and soluble substrate proteins. HflKC can modulate the activity of FtsH. HflKC plays a role in the decision between lysogenic and lytic cycle growth during la
Probab=93.36 E-value=0.72 Score=40.38 Aligned_cols=102 Identities=11% Similarity=0.115 Sum_probs=61.5
Q ss_pred HHHHHHHHhhcCCeEEE--EEEeeccccCH-HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 022958 161 IRKILTERAANFNIALD--DVSITSLTFGK-EFTSAIEAKQVAAQEA-ERAKYIVEKAEQDKRSAIIRAQGEATSAQLIG 236 (289)
Q Consensus 161 v~~~l~~~l~~~Gi~v~--~v~I~~i~~p~-~~~~aie~~~~a~q~~-~~a~~~i~~A~aea~~~~~~A~aeaea~~~~~ 236 (289)
+.+.+.+.+... +.-. .+.|.++.+-+ ..-..+.+...+.+.+ ++++..+..|++++++.+.+|+|+|++..+.+
T Consensus 143 i~~~i~~~l~~~-~~~~~~Gi~v~~v~i~~i~~p~~i~~a~~~~~~A~q~~~~~~~eae~~a~~~~~~A~~ea~~~~~~A 221 (266)
T cd03404 143 IAQDVRELLQAI-LDAYKAGIEIVGVNLQDADPPEEVQDAFDDVNKARQDRERLINEAEAYANEVVPKARGEAARIIQEA 221 (266)
T ss_pred HHHHHHHHHHHH-hhccCCCeEEEEEEEEeCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHH
Confidence 444454455432 2222 78888888754 3445565443333333 33455566777777888899999999999999
Q ss_pred HHhhcChhhHHHHHHHHHHHHHHHhcC
Q 022958 237 QAIANNPAFITLRKIEAAREIAQTIAH 263 (289)
Q Consensus 237 ~a~~~~p~~~~~~~~e~~~~i~~~~~~ 263 (289)
++.+.....-..-..+....+++++.+
T Consensus 222 ~a~~~~~~~~ae~~a~~~~~~~~a~~~ 248 (266)
T cd03404 222 EAYKEEVIAEAQGEAARFESLLAEYKK 248 (266)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHhh
Confidence 888655555444444555555555433
No 36
>cd03405 Band_7_HflC Band_7_HflC: The band 7 domain of flotillin (reggie) like proteins. This group includes proteins similar to prokaryotic HlfC (High frequency of lysogenization C). Although many members of the band 7 family are lipid raft associated, prokaryote plasma membranes lack cholesterol and are unlikely to have lipid raft domains. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Escherichia coli HflC is an integral membrane protein which may localize to the plasma membrane. HflC associates with another band 7 family member (HflK) to form an HflKC complex. HflKC interacts with FtsH in a large complex termed the FtsH holo-enzyme. FtsH is an AAA ATP-dependent protease which exerts progressive proteolysis against membrane-embedded and soluble substrate proteins. HflKC can modulate the activity of FtsH. HflKC plays a role in the decision between lysogenic and lytic cycle growth during la
Probab=93.34 E-value=0.57 Score=40.35 Aligned_cols=80 Identities=14% Similarity=0.210 Sum_probs=47.2
Q ss_pred HHHHHHHHHhhcCCeEEEEEEeeccccCH-HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Q 022958 160 EIRKILTERAANFNIALDDVSITSLTFGK-EFTSAIEAKQVAAQEAERAK-YIVEKAEQDKRSAIIRAQGEATSAQLIGQ 237 (289)
Q Consensus 160 ~v~~~l~~~l~~~Gi~v~~v~I~~i~~p~-~~~~aie~~~~a~q~~~~a~-~~i~~A~aea~~~~~~A~aeaea~~~~~~ 237 (289)
.+.+.+.+.+... +.=..+.|.++.+.+ .+-+.+.+.......+++.+ .....|++++++..++|++++++..+.++
T Consensus 120 ~i~~~i~~~l~~~-l~~~Gi~i~~v~i~~i~~p~~i~~ai~~~~~ae~~~~a~~~~ae~~~~a~~~~aea~~~~~~~~Ae 198 (242)
T cd03405 120 ELMEEIRRAVAEE-AKELGIEVVDVRIKRIDLPEEVSESVYRRMRAERERIAAEFRAEGEEEAERIRADADRERTVILAE 198 (242)
T ss_pred HHHHHHHHHHHHH-HHccCcEEEEEEEEeccCCHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555432 333567788877643 23455544444445555543 45556777777777777777777777776
Q ss_pred Hhh
Q 022958 238 AIA 240 (289)
Q Consensus 238 a~~ 240 (289)
+.+
T Consensus 199 a~a 201 (242)
T cd03405 199 AYR 201 (242)
T ss_pred HHH
Confidence 653
No 37
>PF11978 MVP_shoulder: Shoulder domain; InterPro: IPR021870 This domain is found in the Major Vault Protein and has been called the shoulder domain []. This family includes two bacterial proteins A6FXE2 from SWISSPROT and A1ZGE7 from SWISSPROT. This suggests that some bacteria may possess vault particles. ; PDB: 2ZUO_G 2QZV_B 2ZV5_c 2ZV4_Y.
Probab=92.16 E-value=0.64 Score=35.16 Aligned_cols=96 Identities=9% Similarity=0.039 Sum_probs=61.2
Q ss_pred ccccCCcEEEEEEEEEeecCC--CCHHHHHHHhCccccccccchHHHHHHHHHHhhcChhHHhhhHHHHHH-HH-----H
Q 022958 91 SGSRDLQMVKIGLRVLTRPVA--DKLPTVYRALGENYNERVLPSIIHETLKAVVAQYNASQLITQRETVSR-EI-----R 162 (289)
Q Consensus 91 ~~T~D~~~v~v~~~v~y~i~~--~~~~~~~~~~g~~~~~~~l~~~~~~~lr~~~~~~~~~ei~~~R~~i~~-~v-----~ 162 (289)
+.|+|...+.+..+..|..+. .++.+.-.-+...++-...-..+.+-+|..+++.+.+++..+-..+-. .+ .
T Consensus 11 VET~DhArL~L~LsYnw~F~v~~~~~~~~~k~F~VpDFVGd~Ck~iaSRIR~aVa~~~Fd~FHknSa~iiR~aVFg~~~~ 90 (118)
T PF11978_consen 11 VETADHARLQLQLSYNWHFDVDRKDPEDAAKLFSVPDFVGDACKAIASRIRGAVASVTFDDFHKNSARIIRQAVFGFDEN 90 (118)
T ss_dssp EE-TT-EEEEEEEEEEEEE--TTTHHHHHHHTTSSTTHHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHSTS---
T ss_pred EeecccceeeEEEEEEEEEecCCCChhHHHHhcCCcchHHHHHHHHHHHHHHHHhcCcHHHHcccHHHHHHHHhcCCCCC
Confidence 569999999999888888655 333333333443333334668889999999999999999975443322 21 1
Q ss_pred HHHHHH--hhcCCeEEEEEEeecccc
Q 022958 163 KILTER--AANFNIALDDVSITSLTF 186 (289)
Q Consensus 163 ~~l~~~--l~~~Gi~v~~v~I~~i~~ 186 (289)
..+++. +...|+.|.++.|+++.|
T Consensus 91 ~~~r~~~~F~~N~LvIt~vDvqsvEp 116 (118)
T PF11978_consen 91 GEVRDGLRFPANNLVITSVDVQSVEP 116 (118)
T ss_dssp E--SS-EEETTTTEEEEEEEEEEEEE
T ss_pred CCccceeEEcCCCeEEEEEeeeEecc
Confidence 122222 356799999999999876
No 38
>PRK07021 fliL flagellar basal body-associated protein FliL; Reviewed
Probab=91.85 E-value=4.5 Score=32.71 Aligned_cols=54 Identities=19% Similarity=0.272 Sum_probs=43.3
Q ss_pred chHHHHHHHHHHhhcChhHHhh--hHHHHHHHHHHHHHHHhhcC--CeEEEEEEeecc
Q 022958 131 PSIIHETLKAVVAQYNASQLIT--QRETVSREIRKILTERAANF--NIALDDVSITSL 184 (289)
Q Consensus 131 ~~~~~~~lr~~~~~~~~~ei~~--~R~~i~~~v~~~l~~~l~~~--Gi~v~~v~I~~i 184 (289)
.+.+++.+-..+++.+.+|+.+ +++++.+++.+.++..+..- .-.|.+|.++++
T Consensus 102 ~p~IRd~ii~~Ls~k~~~~L~~~eGk~~Lk~ei~~~in~~l~~~~~~~~V~~VlFt~f 159 (162)
T PRK07021 102 LPEVRSRLLLLLSRKHAAELATEEGKQKLAAEIKQTLSQPLVPGQPPQVVTDVLFTAF 159 (162)
T ss_pred CHHHHHHHHHHHhcCCHHHhcCHHHHHHHHHHHHHHHHHHHhccCCCCceeEEeeeec
Confidence 4678889999999999999985 89999999999999988643 235667766653
No 39
>PRK11029 FtsH protease regulator HflC; Provisional
Probab=91.66 E-value=1.4 Score=40.02 Aligned_cols=84 Identities=12% Similarity=0.181 Sum_probs=52.8
Q ss_pred EEEeeccccCH-HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcChhhHHHHHHHHHH
Q 022958 178 DVSITSLTFGK-EFTSAIEAKQVAAQEAERAK-YIVEKAEQDKRSAIIRAQGEATSAQLIGQAIANNPAFITLRKIEAAR 255 (289)
Q Consensus 178 ~v~I~~i~~p~-~~~~aie~~~~a~q~~~~a~-~~i~~A~aea~~~~~~A~aeaea~~~~~~a~~~~p~~~~~~~~e~~~ 255 (289)
.+.|.++.+-+ .+-..+.+....++.++|.+ ....+|+++++++.++|+|+.++.++.++++++.-.+-..-..++.+
T Consensus 202 GI~V~~V~i~~i~~P~~v~~ai~~~~~Aere~~a~~~~aege~~a~~~~a~A~~e~~~~~AeA~~~a~i~~aegeA~a~~ 281 (334)
T PRK11029 202 GIEVVDVRIKQINLPTEVSDAIYNRMRAEREAVARRHRSQGQEEAEKLRATADYEVTRTLAEAERQGRIMRGEGDAEAAK 281 (334)
T ss_pred CcEEEEEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 47777777744 34556655555566666554 34778889999999999888888888888764322221123344444
Q ss_pred HHHHHh
Q 022958 256 EIAQTI 261 (289)
Q Consensus 256 ~i~~~~ 261 (289)
.+++++
T Consensus 282 ~~~~a~ 287 (334)
T PRK11029 282 LFADAF 287 (334)
T ss_pred HHHHHH
Confidence 444444
No 40
>TIGR01932 hflC HflC protein. HflK and HflC are paralogs encoded by tandem genes in Proteobacteria, spirochetes, and some other bacterial lineages. The HflKC complex is anchored in the membrane and exposed to the periplasm. The complex is not active as a protease, but rather binds to and appears to modulate the ATP-dependent protease FtsH. The overall function of HflKC is not fully described.//Regulation of FtsH protease appears to be negative (PubMed:8947034, PubMed:96367)
Probab=91.28 E-value=1.8 Score=39.15 Aligned_cols=56 Identities=11% Similarity=0.133 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcChhhHHHHHHHHHHHHHHHhcC
Q 022958 208 KYIVEKAEQDKRSAIIRAQGEATSAQLIGQAIANNPAFITLRKIEAAREIAQTIAH 263 (289)
Q Consensus 208 ~~~i~~A~aea~~~~~~A~aeaea~~~~~~a~~~~p~~~~~~~~e~~~~i~~~~~~ 263 (289)
.....+++++++++.++|+|++++.+++++|+++.-.+-..-..++.+.+++++++
T Consensus 224 ~a~~~r~ege~~a~~i~a~A~~e~~~~~aeA~a~a~~~~Aegea~a~~~~~~a~~~ 279 (317)
T TIGR01932 224 IARMHRSQGEEKAEEILGKAEYEVRKILSEAYRTARIIKGEGDAEAAKIYSDAYGK 279 (317)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcc
Confidence 44566778888888888999999888888886432211112334444455444433
No 41
>PF03748 FliL: Flagellar basal body-associated protein FliL; InterPro: IPR005503 This FliL protein controls the rotational direction of the flagella during chemotaxis []. FliL is a cytoplasmic membrane protein associated with the basal body [].; GO: 0001539 ciliary or flagellar motility, 0006935 chemotaxis, 0009425 bacterial-type flagellum basal body
Probab=87.96 E-value=8.3 Score=27.94 Aligned_cols=52 Identities=15% Similarity=0.228 Sum_probs=42.9
Q ss_pred chHHHHHHHHHHhhcChhHHhh--hHHHHHHHHHHHHHHHhhcCCeEEEEEEeecc
Q 022958 131 PSIIHETLKAVVAQYNASQLIT--QRETVSREIRKILTERAANFNIALDDVSITSL 184 (289)
Q Consensus 131 ~~~~~~~lr~~~~~~~~~ei~~--~R~~i~~~v~~~l~~~l~~~Gi~v~~v~I~~i 184 (289)
.+.+++.+...+++++.+|+.+ +++.+.+++.+.++..+.+- .|.+|.+.++
T Consensus 43 ~~~ird~ii~~l~~~~~~~l~~~~g~~~Lk~~l~~~in~~l~~~--~V~~V~ft~f 96 (99)
T PF03748_consen 43 MPRIRDAIISYLSSKTAEDLSGPEGKERLKDELKDRINKILGKG--KVKDVYFTDF 96 (99)
T ss_pred cHHHHHHHHHHHHcCCHHHhcChhhHHHHHHHHHHHHHHhhccC--cEEEEEEEEE
Confidence 5679999999999999999994 89999999999999998543 2666666653
No 42
>PRK08455 fliL flagellar basal body-associated protein FliL; Reviewed
Probab=87.08 E-value=16 Score=30.21 Aligned_cols=51 Identities=18% Similarity=0.234 Sum_probs=42.3
Q ss_pred chHHHHHHHHHHhhcChhHHhh--hHHHHHHHHHHHHHHHhhcCCeEEEEEEeec
Q 022958 131 PSIIHETLKAVVAQYNASQLIT--QRETVSREIRKILTERAANFNIALDDVSITS 183 (289)
Q Consensus 131 ~~~~~~~lr~~~~~~~~~ei~~--~R~~i~~~v~~~l~~~l~~~Gi~v~~v~I~~ 183 (289)
.+.+++.+-..+++.+.+|+.+ .++.+.+++.+.++..+.+- .|.+|.+++
T Consensus 126 ~p~IRD~ii~~Ls~kt~~dL~t~~Gk~~Lk~ei~~~iN~~L~~g--~V~~VyFT~ 178 (182)
T PRK08455 126 DPVIRDIIIRILSSKTVEEVSTNKGKERLKDEIVGKLNEFLIDG--FIKNVFFTD 178 (182)
T ss_pred hhHHHHHHHHHHHcCCHHHhcCHHHHHHHHHHHHHHHHHHhccC--ceeEEEeEe
Confidence 5678999999999999999995 79999999999999999653 455665554
No 43
>cd03407 Band_7_4 A subgroup of the band 7 domain of flotillin (reggie) like proteins. This subgroup contains proteins similar to stomatin, prohibitin, flotillin, HlfK/C and podicin. Many of these band 7 domain-containing proteins are lipid raft-associated. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Microdomains formed from flotillin proteins may in addition be dynamic units with their own regulatory functions. Flotillins have been implicated in signal transduction, vesicle trafficking, cytoskeleton rearrangement and are known to interact with a variety of proteins. Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and participates in trafficking of Glut1 glucose transporters. Prohibitin may act as a chaperone for the stabilization of mitochondrial proteins. Prokaryotic H
Probab=85.99 E-value=4.9 Score=35.15 Aligned_cols=29 Identities=34% Similarity=0.416 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHh
Q 022958 211 VEKAEQDKRSAIIRAQGEATSAQLIGQAI 239 (289)
Q Consensus 211 i~~A~aea~~~~~~A~aeaea~~~~~~a~ 239 (289)
+.+|++++.+.+.+|+|++++..+.++++
T Consensus 163 ~~~Aea~~~~~i~~A~~ea~a~~~~Aeg~ 191 (262)
T cd03407 163 VHKAEAEKIKDIKAAEADAEAKRLQGVGA 191 (262)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHhhhhH
Confidence 33444444444444555554444444443
No 44
>TIGR01933 hflK HflK protein. HflK and HflC are paralogs encoded by tandem genes in Proteobacteria, spirochetes, and some other bacterial lineages. The HflKC complex is anchored in the membrane and exposed to the periplasm. The complex is not active as a protease, but rather binds to and appears to modulate the ATP-dependent protease FtsH. The overall function of HflKC is not fully described.//Regulation of FtsH by HflKC appears to be negative (PubMed:8947034,PubMed:96367)
Probab=85.82 E-value=5.7 Score=34.60 Aligned_cols=62 Identities=13% Similarity=0.174 Sum_probs=25.3
Q ss_pred EEEeeccccCH-HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHh
Q 022958 178 DVSITSLTFGK-EFTSAIEAKQVAAQEAERA-KYIVEKAEQDKRSAIIRAQGEATSAQLIGQAI 239 (289)
Q Consensus 178 ~v~I~~i~~p~-~~~~aie~~~~a~q~~~~a-~~~i~~A~aea~~~~~~A~aeaea~~~~~~a~ 239 (289)
.+.|.++.+-. ..-+.+.+...+.+.+++. +..+.+|+++++..+.+|+++|++..+.++++
T Consensus 134 GI~V~~v~I~~i~~p~~v~~a~~~~~~a~q~~~~~~~~ae~~~~~~~~~a~~~a~~~~~~Aea~ 197 (261)
T TIGR01933 134 GITVTDVNFQSARPPEEVKEAFDDVIIAREDEERYINEAEAYANEVVPKARGDAQRIIEEARGY 197 (261)
T ss_pred CcEEEEEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666665544 2233333222222222222 22233344444444444555555444444443
No 45
>PRK07718 fliL flagellar basal body-associated protein FliL; Reviewed
Probab=83.86 E-value=14 Score=29.09 Aligned_cols=52 Identities=15% Similarity=0.240 Sum_probs=43.0
Q ss_pred chHHHHHHHHHHhhcChhHHhh--hHHHHHHHHHHHHHHHhhcCCeEEEEEEeecc
Q 022958 131 PSIIHETLKAVVAQYNASQLIT--QRETVSREIRKILTERAANFNIALDDVSITSL 184 (289)
Q Consensus 131 ~~~~~~~lr~~~~~~~~~ei~~--~R~~i~~~v~~~l~~~l~~~Gi~v~~v~I~~i 184 (289)
.+.+++.+-..+++.+.+|+.+ +++.+.+++.+.++..+.+ | .|.+|.+++.
T Consensus 86 ~p~Ird~ii~~L~~~~~~~l~~~~G~~~Lr~el~~~in~~l~~-g-~V~~Vyft~f 139 (142)
T PRK07718 86 DFQVKNIIIEELADMNAEDFKGKKGLEALKEQLKEKINNLMQE-G-KVEKVYITSF 139 (142)
T ss_pred ChhhHHHHHHHHHcCCHHHhcChhHHHHHHHHHHHHHHHhhcc-C-ceEEEEEEee
Confidence 4678899999999999999985 8999999999999988865 4 4666666553
No 46
>PRK05697 flagellar basal body-associated protein FliL-like protein; Validated
Probab=81.73 E-value=23 Score=27.76 Aligned_cols=54 Identities=19% Similarity=0.222 Sum_probs=43.7
Q ss_pred chHHHHHHHHHHhhcChhHHhh--hHHHHHHHHHHHHHHHhhcC-C-eEEEEEEeecc
Q 022958 131 PSIIHETLKAVVAQYNASQLIT--QRETVSREIRKILTERAANF-N-IALDDVSITSL 184 (289)
Q Consensus 131 ~~~~~~~lr~~~~~~~~~ei~~--~R~~i~~~v~~~l~~~l~~~-G-i~v~~v~I~~i 184 (289)
.+.+++.+-..+++.+.+|+.+ +|+++.+++.+.++..+..- | -.|.+|.+++.
T Consensus 77 ~P~IRd~ii~lLs~~t~~eL~t~eGke~Lr~eil~~in~~L~~~~g~~~V~~VlFT~F 134 (137)
T PRK05697 77 DPLIRNALVELLGQQTEDKVKSLTGREEIRQECLKQVNELLEQETGKPLVVDLLFTKY 134 (137)
T ss_pred CHHHHHHHHHHHHcCCHHHhcCHHHHHHHHHHHHHHHHHHHhhccCCCceeEEeeeee
Confidence 4789999999999999999985 89999999999999998632 2 24666666553
No 47
>PLN03086 PRLI-interacting factor K; Provisional
Probab=81.59 E-value=2 Score=41.67 Aligned_cols=45 Identities=13% Similarity=0.185 Sum_probs=24.1
Q ss_pred HhhhHHHHHHHHHHHhhcChhhHHHHHHHHHHHHHHHhcCCCCEEEEcCC
Q 022958 224 RAQGEATSAQLIGQAIANNPAFITLRKIEAAREIAQTIAHSANKVFLNSD 273 (289)
Q Consensus 224 ~A~aeaea~~~~~~a~~~~p~~~~~~~~e~~~~i~~~~~~~~~~i~l~~~ 273 (289)
.++++.+|...+.+.+..+..+.-.+.+++... .+++++|+||++
T Consensus 55 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-----~~~GdKI~LPpS 99 (567)
T PLN03086 55 AIEAQIKADQQMQESLQAGRGIVFSRIFEAVSF-----QGNGDKIKLPPS 99 (567)
T ss_pred HHHHHHHHHHHHHHHHHcCCCeEEEEEeecccc-----CCCCCeEEcCHH
Confidence 333444444445555543433333345554444 356789999987
No 48
>COG2268 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=79.35 E-value=14 Score=35.80 Aligned_cols=48 Identities=15% Similarity=0.171 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhcChhh---HHH-HHHHHHHHHHHH
Q 022958 213 KAEQDKRSAIIRAQGEATSAQLIGQAIANNPAF---ITL-RKIEAAREIAQT 260 (289)
Q Consensus 213 ~A~aea~~~~~~A~aeaea~~~~~~a~~~~p~~---~~~-~~~e~~~~i~~~ 260 (289)
.+.+++++...++++||++.+.+++++...-.- ..+ ..++.+..+++.
T Consensus 421 ~~~~~Aea~r~kG~AEAea~r~lAEa~~~~~~a~~a~~~~~~vq~Lp~~~~~ 472 (548)
T COG2268 421 EIKAEAEAIREKGKAEAEAKRALAEAIQVLGDAAAAELFKALVQALPEVAEE 472 (548)
T ss_pred HHHhHHHHHHHhhhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Confidence 344455566667777888889999997543322 112 335555555443
No 49
>PRK05696 fliL flagellar basal body-associated protein FliL; Reviewed
Probab=78.36 E-value=35 Score=27.74 Aligned_cols=54 Identities=17% Similarity=0.211 Sum_probs=41.8
Q ss_pred chHHHHHHHHHHhhcChhHHhh--hHHHHHHHHHHHHHHHhhcC-C-eEEEEEEeecc
Q 022958 131 PSIIHETLKAVVAQYNASQLIT--QRETVSREIRKILTERAANF-N-IALDDVSITSL 184 (289)
Q Consensus 131 ~~~~~~~lr~~~~~~~~~ei~~--~R~~i~~~v~~~l~~~l~~~-G-i~v~~v~I~~i 184 (289)
.+.+++.+-.++++.+.+|+.+ +++.+.+++.+.++..++.. | -.|.+|.+++.
T Consensus 110 ~p~IRd~i~~~Ls~k~~~~L~~~~gk~~Lr~el~~~i~~~l~~~~g~~~V~~VlFt~f 167 (170)
T PRK05696 110 IPLIESALLMTFSSATVDQLSTPAGKEELRQKALASVQETLQKVTGKPVVEKVLFTGF 167 (170)
T ss_pred hHHHHHHHHHHHhcCCHHHhcCHHHHHHHHHHHHHHHHHHHHhhcCCCceeEEeeeec
Confidence 5778999999999999999985 78899999888888777542 2 24666666553
No 50
>cd03403 Band_7_stomatin_like Band_7_stomatin_like: A subgroup of the band 7 domain of flotillin (reggie) like proteins similar to stomatin and podicin (two lipid raft-associated integral membrane proteins). Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Stomatin is widely expressed and, highly expressed in red blood cells. It localizes predominantly to the plasma membrane and to intracellular vesicles of the endocytic pathway, where it is present in higher order homo-oligomeric complexes (of between 9 and 12 monomers). Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and, is implicated in trafficking of Glut1 glucose transporters. Prohibitin is a mitochondrial inner-membrane protein hypothesized to act as a chaperone for the stabilization of mitochondrial proteins. Podicin local
Probab=73.50 E-value=12 Score=31.45 Aligned_cols=71 Identities=13% Similarity=0.193 Sum_probs=47.4
Q ss_pred HHHHHHHHHHHHHH-hhcCCeEEEEEEeeccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 022958 155 ETVSREIRKILTER-AANFNIALDDVSITSLTFGKEFTSAIEAKQVAAQEAERAKYIVEKAEQDKRSAIIRAQGEATSAQ 233 (289)
Q Consensus 155 ~~i~~~v~~~l~~~-l~~~Gi~v~~v~I~~i~~p~~~~~aie~~~~a~q~~~~a~~~i~~A~aea~~~~~~A~aeaea~~ 233 (289)
+++.+.+...+... +.=..+.|.++.+.+ .+-+.+.+.+.+++.++. .+..|++++++..++|+|++++..
T Consensus 115 ~~i~~~l~~~l~~~Gi~v~~v~i~~i~~p~-~~~~ai~~~~~A~~~~~a-------~i~~A~ge~~a~~~~aea~~~~~~ 186 (215)
T cd03403 115 AELVEILDEATDPWGVKVERVEIKDIILPQ-EIQEAMAKQAEAEREKRA-------KIIEAEGERQAAILLAEAAKQAAI 186 (215)
T ss_pred HHHHHHHHHHHhccCeEEEEEEEeeecCCH-HHHHHHHHHHHHHHHHHH-------HHHHhHHHHHHHHHHHHHHHHHcc
Confidence 34445555555442 233468889999876 667788888877774432 355677888888888888877654
No 51
>PRK10930 FtsH protease regulator HflK; Provisional
Probab=64.58 E-value=24 Score=33.22 Aligned_cols=9 Identities=11% Similarity=0.593 Sum_probs=4.7
Q ss_pred EEEeecccc
Q 022958 178 DVSITSLTF 186 (289)
Q Consensus 178 ~v~I~~i~~ 186 (289)
.+.|.++.+
T Consensus 230 GI~V~~V~I 238 (419)
T PRK10930 230 GITLLDVNF 238 (419)
T ss_pred CeEEEEEEE
Confidence 355555555
No 52
>PRK06568 F0F1 ATP synthase subunit B; Validated
Probab=60.79 E-value=86 Score=25.14 Aligned_cols=16 Identities=6% Similarity=0.129 Sum_probs=6.3
Q ss_pred ChhHHhhhH-HHHHHHH
Q 022958 146 NASQLITQR-ETVSREI 161 (289)
Q Consensus 146 ~~~ei~~~R-~~i~~~v 161 (289)
++..++..| ..|.+++
T Consensus 28 PI~~~LeeR~~~I~~~L 44 (154)
T PRK06568 28 AILNSLDAKILEVQEKV 44 (154)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 344444433 3344433
No 53
>PTZ00399 cysteinyl-tRNA-synthetase; Provisional
Probab=60.30 E-value=98 Score=31.03 Aligned_cols=38 Identities=21% Similarity=0.288 Sum_probs=22.4
Q ss_pred HHHHHHH-HhhcCCeEEEEEE----eeccccCHHHHHHHHHHH
Q 022958 161 IRKILTE-RAANFNIALDDVS----ITSLTFGKEFTSAIEAKQ 198 (289)
Q Consensus 161 v~~~l~~-~l~~~Gi~v~~v~----I~~i~~p~~~~~aie~~~ 198 (289)
..+.|++ .|...||.|.+-. +=....|+++....+++.
T Consensus 519 ~~D~iRd~~L~~~Gi~l~D~~~g~~~~~~~~~~~~~~~~~~~~ 561 (651)
T PTZ00399 519 LCDKLRDEWLPNLGIRIEDKPDGPSVWKLDDKEELQREKEEKE 561 (651)
T ss_pred HHHHHHHHHHHHCCCEEEEcCCCceEEEECCHHHHHHHHHHHH
Confidence 3556666 5888999998852 112334455555555443
No 54
>PRK01558 V-type ATP synthase subunit E; Provisional
Probab=58.42 E-value=73 Score=26.56 Aligned_cols=7 Identities=29% Similarity=0.657 Sum_probs=3.2
Q ss_pred EEEEcCC
Q 022958 267 KVFLNSD 273 (289)
Q Consensus 267 ~i~l~~~ 273 (289)
.|+++++
T Consensus 122 ~I~~~~~ 128 (198)
T PRK01558 122 EIILNES 128 (198)
T ss_pred eEEECHH
Confidence 4555543
No 55
>COG0330 HflC Membrane protease subunits, stomatin/prohibitin homologs [Posttranslational modification, protein turnover, chaperones]
Probab=57.06 E-value=57 Score=28.75 Aligned_cols=75 Identities=16% Similarity=0.217 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHH-HhhcCCeEEEEEEeeccccCHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHhhhHHH
Q 022958 156 TVSREIRKILTE-RAANFNIALDDVSITSLTFGKEFTSAIEAKQVAAQEAERAK----YIVEKAEQDKRSAIIRAQGEAT 230 (289)
Q Consensus 156 ~i~~~v~~~l~~-~l~~~Gi~v~~v~I~~i~~p~~~~~aie~~~~a~q~~~~a~----~~i~~A~aea~~~~~~A~aeae 230 (289)
.+.+.+.+.++. -..-..+++.++.... ..-..+.+.|.+.+..+....+++ ..+..|++++++..+.|+|+++
T Consensus 145 ~i~~~l~~~~~~~Gi~V~~V~i~~i~~p~-ev~~a~~~~~~Aer~~ra~i~~Ae~~~~~~~~~a~g~~~a~~i~aea~~~ 223 (291)
T COG0330 145 KIREILDEAADPWGIKVVDVEIKDIDPPE-EVQAAMEKQMAAERDKRAEILEAEGEAQAAILRAEGEAEAAIILAEAEAE 223 (291)
T ss_pred HHHHHHHHhhhhcCcEEEEEEEeecCCCH-HHHHHHHHHHHHHHHHHHHHHHhHhHHhhhhhhhhhhHHHHHHHHHHHHH
Confidence 444445555544 2345568888887654 333466666654444333222221 1223455666666555555544
Q ss_pred H
Q 022958 231 S 231 (289)
Q Consensus 231 a 231 (289)
+
T Consensus 224 a 224 (291)
T COG0330 224 A 224 (291)
T ss_pred H
Confidence 4
No 56
>cd03401 Band_7_prohibitin Band_7_prohibitin. A subgroup of the band 7 domain of flotillin (reggie) like proteins. This subgroup group includes proteins similar to prohibitin (a lipid raft-associated integral membrane protein). Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. These microdomains in addition to being stable scaffolds may also be also dynamic units with their own regulatory functions. Prohibitin is a mitochondrial inner-membrane protein which may act as a chaperone for the stabilization of mitochondrial proteins. Human prohibitin forms a heter-oligomeric complex with Bap-37 (prohibitin 2, a band 7 domain carrying homologue). This complex may protect non-assembled membrane proteins against proteolysis by the m-AAA protease. Prohibitin and Bap-37 yeast homologues have been implicated in yeast longevity and, in the maintenance of mitochondrial morphology.
Probab=53.40 E-value=40 Score=27.68 Aligned_cols=20 Identities=15% Similarity=0.243 Sum_probs=12.6
Q ss_pred HHHHHHhhhHHHHHHHHHHH
Q 022958 219 RSAIIRAQGEATSAQLIGQA 238 (289)
Q Consensus 219 ~~~~~~A~aeaea~~~~~~a 238 (289)
+..+.+|++||++..+.+++
T Consensus 172 ~~~~~~a~~ea~~~~~~A~g 191 (196)
T cd03401 172 KFVVEKAEQEKQAAVIRAEG 191 (196)
T ss_pred HHHHHHHHHHHHHHHHHhhh
Confidence 33566677777776666554
No 57
>PRK04057 30S ribosomal protein S3Ae; Validated
Probab=51.84 E-value=1.1e+02 Score=25.83 Aligned_cols=83 Identities=11% Similarity=0.131 Sum_probs=52.8
Q ss_pred ecccccCCcEEEEEEEEEeecCCCCHHHHHHHhCccccccccchHHHHHHHHHHhhcChhHHhhh--HHHHHHHHHHHHH
Q 022958 89 STSGSRDLQMVKIGLRVLTRPVADKLPTVYRALGENYNERVLPSIIHETLKAVVAQYNASQLITQ--RETVSREIRKILT 166 (289)
Q Consensus 89 ~~~~T~D~~~v~v~~~v~y~i~~~~~~~~~~~~g~~~~~~~l~~~~~~~lr~~~~~~~~~ei~~~--R~~i~~~v~~~l~ 166 (289)
.++.|+||..+.+-+.+.-.-. . ... ....|+....+.+.+.+++++++|+... -+.+++++....+
T Consensus 100 vdvkTkDGy~lRv~~i~~T~~r-------a---~~s-q~~~IRk~m~~~i~~~~~~~~~~e~V~~~i~g~i~~eI~~~~k 168 (203)
T PRK04057 100 VDVTTKDGYKVRVKPVALTTKR-------A---RTS-QKHAIRKIMEEIIEEKASELTFEEFVQEIVFGKLASEIYKEAK 168 (203)
T ss_pred EEEEcCCCCEEEEEEEEEEchh-------h---hhh-HHHHHHHHHHHHHHHHHhcCCHHHHHHHHccchHHHHHHHhhh
Confidence 3577999999888776654411 1 111 2234788888999999999999999963 3555555555554
Q ss_pred HHhhcCCeEEEEEEee
Q 022958 167 ERAANFNIALDDVSIT 182 (289)
Q Consensus 167 ~~l~~~Gi~v~~v~I~ 182 (289)
.-.-=..++|..+.+.
T Consensus 169 ~IyPlr~veIrKvkvl 184 (203)
T PRK04057 169 KIYPLRRVEIRKSKVL 184 (203)
T ss_pred hccCcceEEEEEEEEE
Confidence 4332223566666554
No 58
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=50.37 E-value=1.3e+02 Score=28.60 Aligned_cols=24 Identities=29% Similarity=0.444 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHH
Q 022958 207 AKYIVEKAEQDKRSAIIRAQGEAT 230 (289)
Q Consensus 207 a~~~i~~A~aea~~~~~~A~aeae 230 (289)
-+.+.++|++|++....+|.+|+|
T Consensus 205 r~tE~erae~EretiRvkA~Aeae 228 (630)
T KOG0742|consen 205 RKTEMERAEAERETIRVKAKAEAE 228 (630)
T ss_pred HHhHHHHHHHHHHHHHHHHHHhhh
Confidence 345666777777766666666666
No 59
>PRK14472 F0F1 ATP synthase subunit B; Provisional
Probab=49.44 E-value=95 Score=25.18 Aligned_cols=18 Identities=11% Similarity=0.263 Sum_probs=8.8
Q ss_pred ChhHHhhhH-HHHHHHHHH
Q 022958 146 NASQLITQR-ETVSREIRK 163 (289)
Q Consensus 146 ~~~ei~~~R-~~i~~~v~~ 163 (289)
++.+++..| +.|...+.+
T Consensus 42 pi~~~l~~R~~~I~~~l~~ 60 (175)
T PRK14472 42 PILSALEEREKGIQSSIDR 60 (175)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 455566544 444444433
No 60
>PRK08475 F0F1 ATP synthase subunit B; Validated
Probab=48.69 E-value=1e+02 Score=24.88 Aligned_cols=19 Identities=11% Similarity=0.294 Sum_probs=9.1
Q ss_pred cChhHHhhhH-HHHHHHHHH
Q 022958 145 YNASQLITQR-ETVSREIRK 163 (289)
Q Consensus 145 ~~~~ei~~~R-~~i~~~v~~ 163 (289)
-++.+++..| +.|.+.+..
T Consensus 45 kPi~~~l~~R~~~I~~~l~~ 64 (167)
T PRK08475 45 KPLKNFYKSRINKISKRLEE 64 (167)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 3455566544 444444433
No 61
>cd03406 Band_7_3 A subgroup of the band 7 domain of flotillin (reggie) like proteins. This subgroup contains proteins similar to stomatin, prohibitin, flotillin, HlfK/C and podicin. Many of these band 7 domain-containing proteins are lipid raft-associated. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Microdomains formed from flotillin proteins may in addition be dynamic units with their own regulatory functions. Flotillins have been implicated in signal transduction, vesicle trafficking, cytoskeleton rearrangement and are known to interact with a variety of proteins. Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and participates in trafficking of Glut1 glucose transporters. Prohibitin may act as a chaperone for the stabilization of mitochondrial proteins. Prokaryotic H
Probab=48.40 E-value=1.6e+02 Score=26.12 Aligned_cols=17 Identities=29% Similarity=0.430 Sum_probs=12.3
Q ss_pred hcChhhHHHHHHHHHHH
Q 022958 240 ANNPAFITLRKIEAARE 256 (289)
Q Consensus 240 ~~~p~~~~~~~~e~~~~ 256 (289)
..+|++|+++.++++..
T Consensus 257 ~~~~~~~~~~~~~~~~~ 273 (280)
T cd03406 257 KLTPEYLELMKYEAIAA 273 (280)
T ss_pred cCCHHHHHHHHHHHHHh
Confidence 35788888888876654
No 62
>PRK13460 F0F1 ATP synthase subunit B; Provisional
Probab=47.85 E-value=1e+02 Score=24.92 Aligned_cols=19 Identities=21% Similarity=0.261 Sum_probs=9.4
Q ss_pred cChhHHhhhH-HHHHHHHHH
Q 022958 145 YNASQLITQR-ETVSREIRK 163 (289)
Q Consensus 145 ~~~~ei~~~R-~~i~~~v~~ 163 (289)
-++..++..| +.|.+++.+
T Consensus 39 kpi~~~l~~R~~~I~~~l~~ 58 (173)
T PRK13460 39 DVILKALDERASGVQNDINK 58 (173)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 3455666544 445554433
No 63
>PF08114 PMP1_2: ATPase proteolipid family; InterPro: IPR012589 This family consists of small proteolipids associated with the plasma membrane H+ ATPase. Two proteolipids (PMP1 and PMP2) are associated with the ATPase and both genes are similarly expressed in the wild-type strain of yeast. No modification of the level of transcription of one PMP gene is detected in a strain deleted of the other. Though both proteolipids show similarity with other small proteolipids associated with other cation -transporting ATPases, their functions remain unclear [].
Probab=47.35 E-value=29 Score=21.03 Aligned_cols=11 Identities=27% Similarity=0.610 Sum_probs=8.2
Q ss_pred CCCCCCCCCCc
Q 022958 6 VKVPKVPGGGA 16 (289)
Q Consensus 6 ~~~~~~~~~~~ 16 (289)
|-|+..||+++
T Consensus 1 ~~~s~lp~GVI 11 (43)
T PF08114_consen 1 MLMSTLPGGVI 11 (43)
T ss_pred CccccCCCCee
Confidence 34778899876
No 64
>CHL00019 atpF ATP synthase CF0 B subunit
Probab=47.19 E-value=1.1e+02 Score=25.15 Aligned_cols=20 Identities=30% Similarity=0.351 Sum_probs=11.6
Q ss_pred cChhHHhhhH-HHHHHHHHHH
Q 022958 145 YNASQLITQR-ETVSREIRKI 164 (289)
Q Consensus 145 ~~~~ei~~~R-~~i~~~v~~~ 164 (289)
-++..++..| ..|.+.+.+.
T Consensus 47 kPI~~~l~~R~~~I~~~l~~A 67 (184)
T CHL00019 47 GVLSDLLDNRKQTILNTIRNS 67 (184)
T ss_pred hHHHHHHHHHHHHHHHHHHHH
Confidence 5677777654 4555555443
No 65
>CHL00118 atpG ATP synthase CF0 B' subunit; Validated
Probab=44.79 E-value=1.3e+02 Score=23.91 Aligned_cols=18 Identities=17% Similarity=0.414 Sum_probs=8.1
Q ss_pred ChhHHhhhH-HHHHHHHHH
Q 022958 146 NASQLITQR-ETVSREIRK 163 (289)
Q Consensus 146 ~~~ei~~~R-~~i~~~v~~ 163 (289)
++.+++..| +.+.+.+.+
T Consensus 46 Pi~~~l~~R~~~I~~~l~~ 64 (156)
T CHL00118 46 PLLKVLDERKEYIRKNLTK 64 (156)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 355555443 344444433
No 66
>PRK13461 F0F1 ATP synthase subunit B; Provisional
Probab=44.40 E-value=1.3e+02 Score=23.84 Aligned_cols=19 Identities=21% Similarity=0.363 Sum_probs=9.3
Q ss_pred cChhHHhhhH-HHHHHHHHH
Q 022958 145 YNASQLITQR-ETVSREIRK 163 (289)
Q Consensus 145 ~~~~ei~~~R-~~i~~~v~~ 163 (289)
-++.+++..| ..|...+.+
T Consensus 28 kpi~~~l~~R~~~I~~~l~~ 47 (159)
T PRK13461 28 DKIKAVIDSRQSEIDNKIEK 47 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 3466666544 444444433
No 67
>PRK07352 F0F1 ATP synthase subunit B; Validated
Probab=44.03 E-value=1.3e+02 Score=24.34 Aligned_cols=19 Identities=11% Similarity=0.338 Sum_probs=9.9
Q ss_pred hcChhHHhhhH-HHHHHHHH
Q 022958 144 QYNASQLITQR-ETVSREIR 162 (289)
Q Consensus 144 ~~~~~ei~~~R-~~i~~~v~ 162 (289)
..++..++..| ..|.+.+.
T Consensus 41 ~kpI~~~l~~R~~~I~~~l~ 60 (174)
T PRK07352 41 RGFLGKILEERREAILQALK 60 (174)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34466667644 44554443
No 68
>PRK13455 F0F1 ATP synthase subunit B; Provisional
Probab=43.40 E-value=1.3e+02 Score=24.59 Aligned_cols=18 Identities=17% Similarity=0.423 Sum_probs=9.6
Q ss_pred hhHHhhhH-HHHHHHHHHH
Q 022958 147 ASQLITQR-ETVSREIRKI 164 (289)
Q Consensus 147 ~~ei~~~R-~~i~~~v~~~ 164 (289)
+..++..| +.|.+.+.+.
T Consensus 52 v~~~L~~R~~~I~~~l~~A 70 (184)
T PRK13455 52 IGGMLDKRAEGIRSELEEA 70 (184)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 46667644 4555555443
No 69
>PRK05759 F0F1 ATP synthase subunit B; Validated
Probab=43.02 E-value=1.4e+02 Score=23.43 Aligned_cols=9 Identities=11% Similarity=0.235 Sum_probs=4.2
Q ss_pred ChhHHhhhH
Q 022958 146 NASQLITQR 154 (289)
Q Consensus 146 ~~~ei~~~R 154 (289)
++..++..|
T Consensus 28 pi~~~l~~R 36 (156)
T PRK05759 28 PIMKALEER 36 (156)
T ss_pred HHHHHHHHH
Confidence 344455444
No 70
>PRK01005 V-type ATP synthase subunit E; Provisional
Probab=42.91 E-value=1.7e+02 Score=24.68 Aligned_cols=17 Identities=12% Similarity=0.106 Sum_probs=9.1
Q ss_pred cChhhHHHHHHHHHHHH
Q 022958 241 NNPAFITLRKIEAAREI 257 (289)
Q Consensus 241 ~~p~~~~~~~~e~~~~i 257 (289)
.+|++++-.-++....+
T Consensus 106 ~d~~~l~~lI~~~v~~~ 122 (207)
T PRK01005 106 TDPEVSAKLIQALVQAI 122 (207)
T ss_pred cCHHHHHHHHHHHHHHH
Confidence 47787774444433333
No 71
>PRK13453 F0F1 ATP synthase subunit B; Provisional
Probab=42.89 E-value=1.4e+02 Score=24.22 Aligned_cols=19 Identities=16% Similarity=0.377 Sum_probs=9.8
Q ss_pred cChhHHhhhH-HHHHHHHHH
Q 022958 145 YNASQLITQR-ETVSREIRK 163 (289)
Q Consensus 145 ~~~~ei~~~R-~~i~~~v~~ 163 (289)
-++.+++..| +.|.+.+.+
T Consensus 41 ~pi~~~l~~R~~~I~~~l~~ 60 (173)
T PRK13453 41 GPLKDVMDKRERDINRDIDD 60 (173)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 3466666544 445544433
No 72
>PRK14474 F0F1 ATP synthase subunit B; Provisional
Probab=42.03 E-value=1.3e+02 Score=26.16 Aligned_cols=20 Identities=10% Similarity=0.227 Sum_probs=10.5
Q ss_pred cChhHHhhhH-HHHHHHHHHH
Q 022958 145 YNASQLITQR-ETVSREIRKI 164 (289)
Q Consensus 145 ~~~~ei~~~R-~~i~~~v~~~ 164 (289)
-++.+++..| ..|.+.+.+.
T Consensus 28 kPi~~~l~eR~~~I~~~l~~A 48 (250)
T PRK14474 28 KPIIQVMKKRQQRIANRWQDA 48 (250)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 4466666644 4455554443
No 73
>PRK09173 F0F1 ATP synthase subunit B; Validated
Probab=41.49 E-value=1.8e+02 Score=23.09 Aligned_cols=15 Identities=13% Similarity=0.432 Sum_probs=6.5
Q ss_pred hhHHhhhH-HHHHHHH
Q 022958 147 ASQLITQR-ETVSREI 161 (289)
Q Consensus 147 ~~ei~~~R-~~i~~~v 161 (289)
+.+++..| +.|.+.+
T Consensus 27 i~~~l~~R~~~I~~~l 42 (159)
T PRK09173 27 IARSLDARADRIKNEL 42 (159)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 45555433 3344433
No 74
>PRK14473 F0F1 ATP synthase subunit B; Provisional
Probab=41.43 E-value=1.5e+02 Score=23.60 Aligned_cols=20 Identities=15% Similarity=0.351 Sum_probs=9.9
Q ss_pred cChhHHhhhH-HHHHHHHHHH
Q 022958 145 YNASQLITQR-ETVSREIRKI 164 (289)
Q Consensus 145 ~~~~ei~~~R-~~i~~~v~~~ 164 (289)
-++..++..| +.|.+.+.+.
T Consensus 31 kpi~~~l~~R~~~I~~~l~~A 51 (164)
T PRK14473 31 RPVLNLLNERTRRIEESLRDA 51 (164)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 3455666544 4455544443
No 75
>TIGR03321 alt_F1F0_F0_B alternate F1F0 ATPase, F0 subunit B. CC and in principle may run in either direction. This model represents the F0 subunit B of this apparent second ATP synthase.
Probab=40.49 E-value=1.4e+02 Score=25.77 Aligned_cols=20 Identities=10% Similarity=0.187 Sum_probs=10.6
Q ss_pred cChhHHhhhH-HHHHHHHHHH
Q 022958 145 YNASQLITQR-ETVSREIRKI 164 (289)
Q Consensus 145 ~~~~ei~~~R-~~i~~~v~~~ 164 (289)
-++..++..| ..|...+.+.
T Consensus 28 kPi~~~l~~R~~~I~~~l~~A 48 (246)
T TIGR03321 28 RPILDAMDAREKKIAGELADA 48 (246)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 3456666544 5555555443
No 76
>PRK07353 F0F1 ATP synthase subunit B'; Validated
Probab=39.89 E-value=1.7e+02 Score=22.48 Aligned_cols=16 Identities=6% Similarity=0.299 Sum_probs=7.2
Q ss_pred ChhHHhhhH-HHHHHHH
Q 022958 146 NASQLITQR-ETVSREI 161 (289)
Q Consensus 146 ~~~ei~~~R-~~i~~~v 161 (289)
++.+++..| +.|.+.+
T Consensus 29 pi~~~l~~R~~~I~~~l 45 (140)
T PRK07353 29 PVGKVVEEREDYIRTNR 45 (140)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 355555433 3344433
No 77
>PRK14475 F0F1 ATP synthase subunit B; Provisional
Probab=39.83 E-value=1.7e+02 Score=23.57 Aligned_cols=18 Identities=6% Similarity=0.169 Sum_probs=9.5
Q ss_pred hhHHhhh-HHHHHHHHHHH
Q 022958 147 ASQLITQ-RETVSREIRKI 164 (289)
Q Consensus 147 ~~ei~~~-R~~i~~~v~~~ 164 (289)
+..++.. ++.|.+++.+.
T Consensus 35 i~~~le~R~~~I~~~l~~A 53 (167)
T PRK14475 35 LAGALDAYAAKIQAELDEA 53 (167)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 5566653 45555555443
No 78
>PRK01005 V-type ATP synthase subunit E; Provisional
Probab=39.52 E-value=2.3e+02 Score=23.86 Aligned_cols=15 Identities=20% Similarity=0.324 Sum_probs=5.5
Q ss_pred HHHHHHHHHHHHHhh
Q 022958 212 EKAEQDKRSAIIRAQ 226 (289)
Q Consensus 212 ~~A~aea~~~~~~A~ 226 (289)
..|+.+++..+..|+
T Consensus 45 ~eA~~EAe~ii~~A~ 59 (207)
T PRK01005 45 AEAQEEAEKIIRSAE 59 (207)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333333333333
No 79
>PF13179 DUF4006: Family of unknown function (DUF4006)
Probab=38.67 E-value=22 Score=24.07 Aligned_cols=15 Identities=33% Similarity=0.175 Sum_probs=8.9
Q ss_pred CCCCCCCCCCCCCCCc
Q 022958 1 MNFNNVKVPKVPGGGA 16 (289)
Q Consensus 1 ~~~~~~~~~~~~~~~~ 16 (289)
|+- |+++-+.-|..+
T Consensus 1 M~~-~r~~f~LnGi~G 15 (66)
T PF13179_consen 1 MNN-NRSVFGLNGITG 15 (66)
T ss_pred CCC-ccceeeecchHh
Confidence 555 666666666654
No 80
>PRK13454 F0F1 ATP synthase subunit B'; Provisional
Probab=38.66 E-value=1.7e+02 Score=23.94 Aligned_cols=16 Identities=13% Similarity=0.488 Sum_probs=7.7
Q ss_pred ChhHHhhhH-HHHHHHH
Q 022958 146 NASQLITQR-ETVSREI 161 (289)
Q Consensus 146 ~~~ei~~~R-~~i~~~v 161 (289)
++..++..| ..|.+.+
T Consensus 55 PI~~~l~~R~~~I~~~l 71 (181)
T PRK13454 55 RIGAVLAERQGTITNDL 71 (181)
T ss_pred HHHHHHHHHHHHHHhHH
Confidence 455666544 3344333
No 81
>PRK06231 F0F1 ATP synthase subunit B; Validated
Probab=37.61 E-value=2.5e+02 Score=23.58 Aligned_cols=18 Identities=22% Similarity=0.506 Sum_probs=8.7
Q ss_pred ChhHHhhhH-HHHHHHHHH
Q 022958 146 NASQLITQR-ETVSREIRK 163 (289)
Q Consensus 146 ~~~ei~~~R-~~i~~~v~~ 163 (289)
++..++..| +.|.+.+.+
T Consensus 72 Pi~~~L~~R~~~I~~~L~~ 90 (205)
T PRK06231 72 PTQRFLNKRKELIEAEINQ 90 (205)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 455556544 444444433
No 82
>PRK15322 invasion protein OrgB; Provisional
Probab=36.49 E-value=1.3e+02 Score=25.34 Aligned_cols=10 Identities=10% Similarity=-0.071 Sum_probs=5.8
Q ss_pred CCCEEEEcCC
Q 022958 264 SANKVFLNSD 273 (289)
Q Consensus 264 ~~~~i~l~~~ 273 (289)
.+-.++||.+
T Consensus 111 ~pL~l~lP~~ 120 (210)
T PRK15322 111 GQLFLTLPVN 120 (210)
T ss_pred CceeEecChh
Confidence 3445677765
No 83
>TIGR01144 ATP_synt_b ATP synthase, F0 subunit b. This model describes the F1/F0 ATP synthase b subunit in bacteria only. Scoring just below the trusted cutoff are the N-terminal domains of Mycobacterial b/delta fusion proteins and a subunit from an archaeon, Methanosarcina barkeri, in which the ATP synthase homolog differs in architecture and is not experimentally confirmed. This model helps resolve b from the related b' subunit. Within the family is an example from a sodium-translocating rather than proton-translocating ATP synthase.
Probab=36.22 E-value=2.1e+02 Score=22.27 Aligned_cols=6 Identities=17% Similarity=0.230 Sum_probs=2.6
Q ss_pred hhHHhh
Q 022958 147 ASQLIT 152 (289)
Q Consensus 147 ~~ei~~ 152 (289)
+..++.
T Consensus 20 i~~~l~ 25 (147)
T TIGR01144 20 LAKAIE 25 (147)
T ss_pred HHHHHH
Confidence 444444
No 84
>PRK09174 F0F1 ATP synthase subunit B'; Validated
Probab=31.48 E-value=3.1e+02 Score=22.96 Aligned_cols=19 Identities=11% Similarity=0.429 Sum_probs=10.2
Q ss_pred ChhHHhhhH-HHHHHHHHHH
Q 022958 146 NASQLITQR-ETVSREIRKI 164 (289)
Q Consensus 146 ~~~ei~~~R-~~i~~~v~~~ 164 (289)
++..++..| +.|.+++.+.
T Consensus 77 pI~~vLe~R~~~I~~~L~~A 96 (204)
T PRK09174 77 RIGGIIETRRDRIAQDLDQA 96 (204)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 455666544 5565555443
No 85
>KOG4753 consensus Predicted membrane protein [Function unknown]
Probab=29.16 E-value=1e+02 Score=23.49 Aligned_cols=41 Identities=12% Similarity=0.141 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHhhcccEEEecCCeEEEEEccccCccceeeCCcc
Q 022958 22 KVGIIGGIGLYAAANSLYNVEGGHRAIMFNRITGVKDKVYPEGT 65 (289)
Q Consensus 22 ~~~v~~~~~~~~~~~~~~~V~~g~~gVv~~r~gg~~~~~~~pG~ 65 (289)
.++++++.+.+++++....-.++-.|+++ -.=|.. .+-||+
T Consensus 59 ~fg~Lli~lg~fl~~~~~~ag~~~~gv~f-~V~G~L--~FiPGf 99 (124)
T KOG4753|consen 59 VFGLLLIGLGFFLAGGRVEAGDRSQGVFF-FVLGIL--LFIPGF 99 (124)
T ss_pred HHHHHHHHHHHHheecceeeCCCcceEEE-ehhhhH--hcccch
Confidence 33344444444444444443555556664 222333 455554
No 86
>PF01015 Ribosomal_S3Ae: Ribosomal S3Ae family; InterPro: IPR001593 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. A number of eukaryotic and archaebacterial ribosomal proteins can be grouped on the basis of sequence similarities. One of these families consists of proteins that have from 220 to 250 amino acids and represents Rps1 (eukaryotic) and Rps3Ae (archaeal and eukaryotic).; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 2XZN_4 2XZM_4 3U5C_B 3U5G_B.
Probab=27.35 E-value=2.4e+02 Score=23.56 Aligned_cols=79 Identities=11% Similarity=0.201 Sum_probs=46.0
Q ss_pred cccccCCcEEEEEEEEEeecCCCCHHHHHHHhCccccccccchHHHHHHHHHHhhcChhHHhhhHHHHHHHHHHHHHHHh
Q 022958 90 TSGSRDLQMVKIGLRVLTRPVADKLPTVYRALGENYNERVLPSIIHETLKAVVAQYNASQLITQRETVSREIRKILTERA 169 (289)
Q Consensus 90 ~~~T~D~~~v~v~~~v~y~i~~~~~~~~~~~~g~~~~~~~l~~~~~~~lr~~~~~~~~~ei~~~R~~i~~~v~~~l~~~l 169 (289)
++.|+||..+.+-+.+.=+- .. .... ...++....+.+.+.+++.+++|++..- +...+.+++...+
T Consensus 107 dvkT~DGy~lRvf~i~fT~~-ra---------~~sq-~~~IRk~m~~ii~~~~~~~~~~e~V~~l--i~~~i~~eI~k~~ 173 (194)
T PF01015_consen 107 DVKTKDGYLLRVFCIAFTKK-RA---------KSSQ-IKAIRKKMVEIITEEASELDLKELVKKL--IPGSIGKEIEKAC 173 (194)
T ss_dssp EEEETTTEEEEEEEEEEE--------------TCHH-HHHHHHHHHHHHHHHCCTSHHHHHHHHH--CTTHHHHHHHHHH
T ss_pred EEEcCCCcEEEEEEEEEEee-cc---------cchH-HHHHHHHHHHHHHHHhccCcHHHHHHHH--ccchHHHHHHHHh
Confidence 46799998887765443321 11 1111 2347888888999999999999999632 3444455555555
Q ss_pred hcCCeEEEEEEee
Q 022958 170 ANFNIALDDVSIT 182 (289)
Q Consensus 170 ~~~Gi~v~~v~I~ 182 (289)
.+. +-+.+|.|+
T Consensus 174 k~I-yPl~~v~Ir 185 (194)
T PF01015_consen 174 KKI-YPLRNVEIR 185 (194)
T ss_dssp CTT---EEEEEEE
T ss_pred ccc-cccceEEEE
Confidence 443 233344443
No 87
>PF11190 DUF2976: Protein of unknown function (DUF2976); InterPro: IPR021356 Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in a region flanked by markers of conjugative transfer and/or transposition.
Probab=27.34 E-value=27 Score=25.16 Aligned_cols=32 Identities=19% Similarity=0.173 Sum_probs=18.7
Q ss_pred CCCCCCCCCCCCCchhHHHHHHHHHHHHHHhhc
Q 022958 3 FNNVKVPKVPGGGAASALIKVGIIGGIGLYAAA 35 (289)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 35 (289)
+++.+-+|..|+. |....+++++++++++|+.
T Consensus 50 y~eir~gK~~W~~-fg~~~vVGvvLlv~viwLl 81 (87)
T PF11190_consen 50 YNEIRDGKKTWGD-FGATVVVGVVLLVFVIWLL 81 (87)
T ss_pred HHHHHcCcccHHH-hhhHHHHHHHHHHHHHHHH
Confidence 3455556666664 4455566666666666654
No 88
>PRK13428 F0F1 ATP synthase subunit delta; Provisional
Probab=27.11 E-value=5.5e+02 Score=24.39 Aligned_cols=18 Identities=22% Similarity=0.503 Sum_probs=8.8
Q ss_pred ChhHHhhhH-HHHHHHHHH
Q 022958 146 NASQLITQR-ETVSREIRK 163 (289)
Q Consensus 146 ~~~ei~~~R-~~i~~~v~~ 163 (289)
++..++..| +.|.+.+.+
T Consensus 25 Pi~~~l~~R~~~I~~~L~e 43 (445)
T PRK13428 25 PVRRLMAARQDTVRQQLAE 43 (445)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 355566544 445554443
No 89
>PF03179 V-ATPase_G: Vacuolar (H+)-ATPase G subunit; InterPro: IPR005124 This family represents the eukaryotic vacuolar (H+)-ATPase (V-ATPase) G subunit. V-ATPases generate an acidic environment in several intracellular compartments. Correspondingly, they are found as membrane-attached proteins in several organelles. They are also found in the plasma membranes of some specialised cells. V-ATPases consist of peripheral (V1) and membrane integral (V0) heteromultimeric complexes. The G subunit is part of the V1 subunit, but is also thought to be strongly attached to the V0 complex. It may be involved in the coupling of ATP degradation to H+ translocation.; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015992 proton transport, 0016471 vacuolar proton-transporting V-type ATPase complex; PDB: 2KWY_A 2K88_A.
Probab=25.52 E-value=1.8e+02 Score=21.29 Aligned_cols=9 Identities=11% Similarity=0.401 Sum_probs=3.5
Q ss_pred HHHHHHHHH
Q 022958 212 EKAEQDKRS 220 (289)
Q Consensus 212 ~~A~aea~~ 220 (289)
..|+.+++.
T Consensus 32 k~Ak~eA~~ 40 (105)
T PF03179_consen 32 KQAKEEAEK 40 (105)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 334433333
No 90
>PF06188 HrpE: HrpE/YscL/FliH and V-type ATPase subunit E; InterPro: IPR009335 This family consists of several bacterial HrpE proteins, which are believed to function on the type III secretion system, specifically the secretion of HrpZ (harpinPss) []. This family also includes V-type proton ATPase subunit E proteins. This subunit appears to form a tight interaction with subunit G in the F0 complex. Subunits E and G may act together as stators to prevent certain subunits from rotating with the central rotary element []. PF01991 from PFAM also contains V-type ATPase subunit E proteins. There is an evolutionary link between type III secretion systems and membrane-associated proton translocating ATPases [].
Probab=25.43 E-value=2.1e+02 Score=23.69 Aligned_cols=18 Identities=22% Similarity=0.423 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 022958 206 RAKYIVEKAEQDKRSAII 223 (289)
Q Consensus 206 ~a~~~i~~A~aea~~~~~ 223 (289)
+|+..+..|+.+++..+.
T Consensus 42 qA~~Il~~Ae~eAe~l~~ 59 (191)
T PF06188_consen 42 QAEQILQQAEEEAEALLE 59 (191)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344455555555554444
No 91
>PRK12613 galactose-6-phosphate isomerase subunit LacA; Provisional
Probab=24.88 E-value=58 Score=25.70 Aligned_cols=35 Identities=14% Similarity=0.131 Sum_probs=26.1
Q ss_pred HHHHHHHHHHhhcCCeEEEEEEeeccccCHHHHHHH
Q 022958 159 REIRKILTERAANFNIALDDVSITSLTFGKEFTSAI 194 (289)
Q Consensus 159 ~~v~~~l~~~l~~~Gi~v~~v~I~~i~~p~~~~~ai 194 (289)
-++++.|.+.|...|++|.++.-.+.++|+ +...+
T Consensus 12 ~~lK~~l~~~L~~~g~eV~D~G~~~~dypd-~a~~v 46 (141)
T PRK12613 12 NALKELIKSFLQEEGYDIIDVTDINSDFID-NTLAV 46 (141)
T ss_pred HHHHHHHHHHHHHCCCEEEEcCCCCCChHH-HHHHH
Confidence 467888888888899999999866666655 44333
No 92
>PRK14471 F0F1 ATP synthase subunit B; Provisional
Probab=24.46 E-value=3.6e+02 Score=21.40 Aligned_cols=19 Identities=5% Similarity=0.226 Sum_probs=9.4
Q ss_pred ChhHHhhhH-HHHHHHHHHH
Q 022958 146 NASQLITQR-ETVSREIRKI 164 (289)
Q Consensus 146 ~~~ei~~~R-~~i~~~v~~~ 164 (289)
++..++..| +.|.+++.+.
T Consensus 32 pi~~~l~~R~~~I~~~l~~A 51 (164)
T PRK14471 32 PILGAVKEREDSIKNALASA 51 (164)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 455556544 4455554443
No 93
>PF06188 HrpE: HrpE/YscL/FliH and V-type ATPase subunit E; InterPro: IPR009335 This family consists of several bacterial HrpE proteins, which are believed to function on the type III secretion system, specifically the secretion of HrpZ (harpinPss) []. This family also includes V-type proton ATPase subunit E proteins. This subunit appears to form a tight interaction with subunit G in the F0 complex. Subunits E and G may act together as stators to prevent certain subunits from rotating with the central rotary element []. PF01991 from PFAM also contains V-type ATPase subunit E proteins. There is an evolutionary link between type III secretion systems and membrane-associated proton translocating ATPases [].
Probab=24.18 E-value=3.6e+02 Score=22.31 Aligned_cols=7 Identities=14% Similarity=0.169 Sum_probs=3.1
Q ss_pred EEEEcCC
Q 022958 267 KVFLNSD 273 (289)
Q Consensus 267 ~i~l~~~ 273 (289)
++++-|+
T Consensus 134 tL~~hP~ 140 (191)
T PF06188_consen 134 TLRCHPD 140 (191)
T ss_pred EEEECHH
Confidence 3444443
No 94
>PF10717 ODV-E18: Occlusion-derived virus envelope protein ODV-E18; InterPro: IPR019655 Baculovirus occlusion-derived virus (ODV) derives its envelope from an intranuclear membrane source. Occlusion-derived viral envelope proteins that are detected in viral-induced intranuclear microvesicles, but not detected in the plasma membrane, cytoplasmic membranes, or the nuclear envelope. This entry represents ODV-E18 protein which is encoded by baculovirus late genes with transcription initiating from a TAAG motif. ODV-E18 exists as a dimer in the ODV envelope, which contains a hydrophobic domain that putatively acts as a target or retention signal for intranuclear microvesicles []. ; GO: 0019031 viral envelope
Probab=23.75 E-value=93 Score=22.10 Aligned_cols=9 Identities=11% Similarity=0.098 Sum_probs=4.3
Q ss_pred CcceEEccc
Q 022958 63 EGTHLMVPW 71 (289)
Q Consensus 63 pG~~~~~P~ 71 (289)
|...|..|.
T Consensus 59 ~~~~f~NPL 67 (85)
T PF10717_consen 59 PQMGFTNPL 67 (85)
T ss_pred Ccccccccc
Confidence 344455554
No 95
>KOG2007 consensus Cysteinyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=23.71 E-value=4.5e+02 Score=25.59 Aligned_cols=8 Identities=25% Similarity=0.717 Sum_probs=3.6
Q ss_pred cCCeEEEE
Q 022958 171 NFNIALDD 178 (289)
Q Consensus 171 ~~Gi~v~~ 178 (289)
.+|+.+.+
T Consensus 506 ~~g~~led 513 (586)
T KOG2007|consen 506 ELGVRLED 513 (586)
T ss_pred HhhhHHHh
Confidence 44544443
No 96
>PRK08476 F0F1 ATP synthase subunit B'; Validated
Probab=23.65 E-value=3.6e+02 Score=21.01 Aligned_cols=18 Identities=11% Similarity=0.396 Sum_probs=9.1
Q ss_pred ChhHHhhhH-HHHHHHHHH
Q 022958 146 NASQLITQR-ETVSREIRK 163 (289)
Q Consensus 146 ~~~ei~~~R-~~i~~~v~~ 163 (289)
++..++..| +.+.+.+..
T Consensus 31 Pi~~~l~~R~~~I~~~l~~ 49 (141)
T PRK08476 31 PLLKFMDNRNASIKNDLEK 49 (141)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 455566544 445554433
No 97
>KOG2668 consensus Flotillins [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=23.63 E-value=1.7e+02 Score=26.77 Aligned_cols=25 Identities=20% Similarity=0.181 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHH----hcCCCCEEEEcCC
Q 022958 249 RKIEAAREIAQT----IAHSANKVFLNSD 273 (289)
Q Consensus 249 ~~~e~~~~i~~~----~~~~~~~i~l~~~ 273 (289)
.-||++..|+.- |++.+...++++|
T Consensus 356 ~lLealp~Ia~~ia~plaktnkI~v~s~g 384 (428)
T KOG2668|consen 356 TLLEALPMIAAEIAAPLAKTNKISVWSHG 384 (428)
T ss_pred HHHHHHHHHHHHhccchhhcCeEEEEecC
Confidence 456777766653 4554333445554
No 98
>PHA01972 structural protein
Probab=23.02 E-value=8.6e+02 Score=25.23 Aligned_cols=41 Identities=10% Similarity=0.221 Sum_probs=22.5
Q ss_pred hHHHHHHHHHHh-hcChhHHhhhHHHHHHHHHHHHHHHhhcC
Q 022958 132 SIIHETLKAVVA-QYNASQLITQRETVSREIRKILTERAANF 172 (289)
Q Consensus 132 ~~~~~~lr~~~~-~~~~~ei~~~R~~i~~~v~~~l~~~l~~~ 172 (289)
..+..+++...+ +++.+|+..--+.|...+++...++-..|
T Consensus 3 ~~C~~aV~~Aagr~L~a~E~~~Ie~ri~~~~r~~ar~d~~~w 44 (828)
T PHA01972 3 QKCVEAVAQAAGRQLTADEIKGIEDRIKEAMRSVARKDPKGW 44 (828)
T ss_pred hHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHhhCcccc
Confidence 445666777776 57777776544444444444444443334
No 99
>PTZ00491 major vault protein; Provisional
Probab=22.82 E-value=3.8e+02 Score=27.75 Aligned_cols=28 Identities=25% Similarity=0.329 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 022958 211 VEKAEQDKRSAIIRAQGEATSAQLIGQA 238 (289)
Q Consensus 211 i~~A~aea~~~~~~A~aeaea~~~~~~a 238 (289)
...|++++++..++++++-+++++.++|
T Consensus 718 ~a~a~a~aea~~ie~e~~v~~a~lra~a 745 (850)
T PTZ00491 718 RAEALAEAEARLIEAEAEVEQAELRAKA 745 (850)
T ss_pred HHHHHHHHHHHhhhhhhHHHHHHhhhHH
Confidence 3345555666666666665555554444
No 100
>KOG4737 consensus ATPase membrane sector associated protein [Energy production and conversion]
Probab=22.12 E-value=1e+02 Score=27.14 Aligned_cols=37 Identities=14% Similarity=0.269 Sum_probs=30.1
Q ss_pred chhHHHHHHHHHHHHHHhhcccEEEecCCeEEEEEccc
Q 022958 16 AASALIKVGIIGGIGLYAAANSLYNVEGGHRAIMFNRI 53 (289)
Q Consensus 16 ~~~~~~~~~v~~~~~~~~~~~~~~~V~~g~~gVv~~r~ 53 (289)
+|-.+++++++++++++...-+.-..+||.--|++ |.
T Consensus 282 iFni~Lw~mvil~lali~i~y~ia~mDPg~DSIIY-RM 318 (326)
T KOG4737|consen 282 IFNIFLWLMVILVLALIYIVYGIASMDPGKDSIIY-RM 318 (326)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhccCCCcceeEE-Ee
Confidence 35566777888888888888888899999999998 65
No 101
>COG0711 AtpF F0F1-type ATP synthase, subunit b [Energy production and conversion]
Probab=21.79 E-value=4.2e+02 Score=21.16 Aligned_cols=49 Identities=24% Similarity=0.295 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 022958 188 KEFTSAIEAKQVAAQ----EAERAKYIVEKAEQDKRSAIIRAQGEATSAQLIGQA 238 (289)
Q Consensus 188 ~~~~~aie~~~~a~q----~~~~a~~~i~~A~aea~~~~~~A~aeaea~~~~~~a 238 (289)
+.+..+++.++..-+ ++++.+.+...+.++.+.++.+|+ .++..++.+|
T Consensus 29 ~pi~~~l~~R~~~I~~~l~~A~~~~~ea~~~~~~~~~~l~~Ar--~~a~~Ii~~A 81 (161)
T COG0711 29 KPILKALDERQAKIADDLAEAERLKEEAQALLAEYEQELEEAR--EQASEIIEQA 81 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHH
Done!