Query 022958
Match_columns 289
No_of_seqs 164 out of 1417
Neff 8.7
Searched_HMMs 29240
Date Mon Mar 25 13:59:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022958.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/022958hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3bk6_A PH stomatin; archaea, t 100.0 8.3E-29 2.8E-33 205.8 15.8 171 71-259 2-176 (188)
2 4fvg_A Stomatin; mixed alpha-b 99.9 2.3E-23 7.7E-28 163.2 11.6 127 67-197 3-130 (133)
3 1win_A Flotillin 2; BAND 7 dom 99.8 3.5E-20 1.2E-24 146.8 7.7 126 71-196 3-134 (143)
4 2rpb_A Hypothetical membrane p 99.7 4.7E-18 1.6E-22 129.2 5.2 109 77-189 4-113 (113)
5 2zuo_A MVP, major vault protei 98.5 1.5E-05 5E-10 77.2 20.0 156 38-194 459-654 (861)
6 2kk7_A V-type ATP synthase sub 61.7 14 0.00048 22.8 4.3 9 227-235 30-38 (52)
7 2b5u_A Colicin E3; high resolu 61.7 38 0.0013 31.1 8.7 34 171-204 277-310 (551)
8 2kk7_A V-type ATP synthase sub 41.3 60 0.002 19.8 5.7 21 210-230 26-46 (52)
9 2k6i_A Uncharacterized protein 39.5 50 0.0017 20.7 4.2 21 210-230 31-51 (56)
10 2zuo_A MVP, major vault protei 37.7 1.5E+02 0.0051 29.2 9.2 12 71-82 522-533 (861)
11 3v6i_A V-type ATP synthase sub 36.6 44 0.0015 26.2 4.7 8 265-272 117-124 (187)
12 3v6i_B V-type ATP synthase, su 33.7 1.2E+02 0.0043 21.3 6.8 12 211-222 33-44 (105)
13 3v6i_B V-type ATP synthase, su 29.9 1.5E+02 0.005 21.0 7.1 16 211-226 22-37 (105)
14 4efa_E V-type proton ATPase su 29.1 1.9E+02 0.0063 23.4 7.5 9 187-195 10-18 (233)
15 3j20_A 30S ribosomal protein S 28.7 2.2E+02 0.0076 22.7 9.8 82 89-181 107-190 (198)
16 4efa_G V-type proton ATPase su 26.6 1.4E+02 0.0048 21.7 5.5 8 189-196 11-18 (119)
17 2xzm_4 40S ribosomal protein S 26.0 1.6E+02 0.0054 24.7 6.4 79 89-171 128-209 (265)
18 2acm_B Mucin-1; auto-catalytic 26.0 82 0.0028 19.6 3.4 21 169-189 32-52 (55)
19 3bk6_A PH stomatin; archaea, t 25.9 1.8E+02 0.0061 22.5 6.6 64 156-227 88-152 (188)
No 1
>3bk6_A PH stomatin; archaea, trimer, coiled- coil, flotillin, SPFH, membrane fusion, trafficking, transmembrane, membrane protein; 3.20A {Pyrococcus horikoshii}
Probab=99.96 E-value=8.3e-29 Score=205.76 Aligned_cols=171 Identities=21% Similarity=0.334 Sum_probs=146.7
Q ss_pred ccCccEEEeeeeeeeeeee-cccccCCcEEEEEEEEEeecCCCCHHHHHHHhCccccccccchHHHHHHHHHHhhcChhH
Q 022958 71 WFERPVIYDVRARPHLVES-TSGSRDLQMVKIGLRVLTRPVADKLPTVYRALGENYNERVLPSIIHETLKAVVAQYNASQ 149 (289)
Q Consensus 71 ~~~~v~~~~~~~~~~~~~~-~~~T~D~~~v~v~~~v~y~i~~~~~~~~~~~~g~~~~~~~l~~~~~~~lr~~~~~~~~~e 149 (289)
|++++..+|++.++++++. .+.|+|+++|+++++++||| .|+..++.. ..++...+.+.+++.+|+++|+++++|
T Consensus 2 fi~~v~~vd~r~~~~~v~~~~v~TkD~~~V~v~~~v~yrI--~dp~~~~~~--v~~~~~~i~~~~~~~lR~vig~~~l~e 77 (188)
T 3bk6_A 2 IFEKAVIVDLRTQVLDVPVQETITKDNVPVRVNAVVYFRV--VDPVKAVTQ--VKNYIMATSQISQTTLRSVIGQAHLDE 77 (188)
T ss_dssp CEEECCCCCSSCEEEEEEEEEEECTTSCEEEEEEEEEEEE--SCHHHHHHS--SSCHHHHHHHHHHHHHHHHHHTSCHHH
T ss_pred ceEEEEEEeeeEEEEecCCceeEcCCCCEEEEEEEEEEEE--CCHHHHHHH--hcCHHHHHHHHHHHHHHHHHccCCHHH
Confidence 5688999999999999987 58999999999999999995 567766653 344555688999999999999999999
Q ss_pred HhhhHHHHHHHHHHHHHHHhhcCCeEEEEEEeeccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Q 022958 150 LITQRETVSREIRKILTERAANFNIALDDVSITSLTFGKEFTSAIEAKQVAAQEAERAKYIVEKAEQDKRSAIIRAQGEA 229 (289)
Q Consensus 150 i~~~R~~i~~~v~~~l~~~l~~~Gi~v~~v~I~~i~~p~~~~~aie~~~~a~q~~~~a~~~i~~A~aea~~~~~~A~aea 229 (289)
++++|++|+..+++.|++.+.+|||+|.+|.|++|+||+++.++|+++. .|+.++++++++|+||+
T Consensus 78 ll~~R~~i~~~i~~~l~~~~~~~GI~v~~v~I~~i~~p~ev~~a~~~~~--------------~Aere~~A~i~~Aege~ 143 (188)
T 3bk6_A 78 LLSERDKLNMQLQRIIDEATDPWGIKVTAVEIKDVELPAGMQKAMARQA--------------EAERERRARITLAEAER 143 (188)
T ss_dssp HHHCHHHHHHHHHHHHHHHTGGGTEEEEEEEEEEEEEETTHHHHHHHHH--------------HHHHHHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHHHHHHHhcCeEEEEEEEEecCCCHHHHHHHHHHH--------------HHHHHHHHHHHHhHHHH
Confidence 9999999999999999999999999999999999999999999997432 26677888999999999
Q ss_pred HHHHHHHHHh---hcChhhHHHHHHHHHHHHHH
Q 022958 230 TSAQLIGQAI---ANNPAFITLRKIEAAREIAQ 259 (289)
Q Consensus 230 ea~~~~~~a~---~~~p~~~~~~~~e~~~~i~~ 259 (289)
+|+++++++. +.+|.++++|++|++.+++.
T Consensus 144 ~a~~~~a~a~~~~~~~~~~l~lr~le~~~~ia~ 176 (188)
T 3bk6_A 144 QAAEKLREAAEIISEHPMALQLRTLQTISDVAG 176 (188)
T ss_dssp HHHHHHHHHHHHHHHCTTHHHHHHTTC------
T ss_pred HHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHhc
Confidence 9999998874 56999999999999999986
No 2
>4fvg_A Stomatin; mixed alpha-beta fold, membrane scaffold, membrane protein; 1.80A {Mus musculus} PDB: 4fvj_A 4fvf_A
Probab=99.90 E-value=2.3e-23 Score=163.19 Aligned_cols=127 Identities=16% Similarity=0.243 Sum_probs=101.2
Q ss_pred EEccccCccEEEeeeeeeeeeeec-ccccCCcEEEEEEEEEeecCCCCHHHHHHHhCccccccccchHHHHHHHHHHhhc
Q 022958 67 LMVPWFERPVIYDVRARPHLVEST-SGSRDLQMVKIGLRVLTRPVADKLPTVYRALGENYNERVLPSIIHETLKAVVAQY 145 (289)
Q Consensus 67 ~~~P~~~~v~~~~~~~~~~~~~~~-~~T~D~~~v~v~~~v~y~i~~~~~~~~~~~~g~~~~~~~l~~~~~~~lr~~~~~~ 145 (289)
+..||++++.++|.+.++++++.+ +.|+|+..+.++++++||| .|+.+++. +.++.+..+...+++++|+++|++
T Consensus 3 l~~P~id~v~~vd~R~~~~d~~~q~vlT~D~~~v~Vd~~v~yrI--~Dp~~~~~--~v~~~~~~l~~~~~~~lR~vig~~ 78 (133)
T 4fvg_A 3 LGSPSTDSAAKVDMRTISFDIPPQEVLTKDSVTISVDGVVYYRV--QNATLAVA--NITNADSATRLLAQTTLRNALGTK 78 (133)
T ss_dssp -----------CCCSCEEEEEEEEEEECTTCCEEEEEEEEEEEE--SCHHHHHH--SSSCHHHHHHHHHHHHHHHHHHTS
T ss_pred CCCCceeEEEEEEeEEEEecCCCeEEEeCCCCEEEEEEEEEEEE--eehHHhHh--hhhhHHHHHHHHHHHHHHHHhccc
Confidence 678999999999999999999874 9999999999999999995 67777775 556777789999999999999999
Q ss_pred ChhHHhhhHHHHHHHHHHHHHHHhhcCCeEEEEEEeeccccCHHHHHHHHHH
Q 022958 146 NASQLITQRETVSREIRKILTERAANFNIALDDVSITSLTFGKEFTSAIEAK 197 (289)
Q Consensus 146 ~~~ei~~~R~~i~~~v~~~l~~~l~~~Gi~v~~v~I~~i~~p~~~~~aie~~ 197 (289)
++++++++|++|+.++++.+++.+++|||+|.+|.|++++||+++.+||+++
T Consensus 79 ~ldeil~~r~~i~~~i~~~l~~~~~~~GI~V~~V~ikdi~~P~~v~~am~~~ 130 (133)
T 4fvg_A 79 NLSQILSDREEIAHHMQSTLDDATDDWGIKVERVEIKDVKLPVQLQRAMAAE 130 (133)
T ss_dssp CHHHHHHCHHHHHHHHHHHHHHHHGGGTEEEEEEEEEEEECCCC--------
T ss_pred cHHHHHhhHHHHHHHHHHHHHHHHhcCCEEEEEEEEEecCCCHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999643
No 3
>1win_A Flotillin 2; BAND 7 domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, cell adhesion; NMR {Mus musculus} SCOP: d.43.2.1
Probab=99.81 E-value=3.5e-20 Score=146.82 Aligned_cols=126 Identities=8% Similarity=0.111 Sum_probs=109.1
Q ss_pred ccCccEEEeeeeeeeeeeec-ccccCCcEEEEEEEEEeecC--CCCHHHHHHHh-C--ccccccccchHHHHHHHHHHhh
Q 022958 71 WFERPVIYDVRARPHLVEST-SGSRDLQMVKIGLRVLTRPV--ADKLPTVYRAL-G--ENYNERVLPSIIHETLKAVVAQ 144 (289)
Q Consensus 71 ~~~~v~~~~~~~~~~~~~~~-~~T~D~~~v~v~~~v~y~i~--~~~~~~~~~~~-g--~~~~~~~l~~~~~~~lr~~~~~ 144 (289)
|++++.++|.+.++++++.+ +.|+|+.++.+|+.++|||. +..+......+ + .+..+..+.+.+++.+|+++|+
T Consensus 3 ~i~~v~~vdlr~~~ldv~~q~viTkD~v~v~Vdavv~~rI~dd~~~~~~a~~~~~~~~~~~~~~~l~~~~~~~LR~viG~ 82 (143)
T 1win_A 3 SGSSGQRISLEIMTLQPRCEDVETAEGVALTVTGVAQVKIMTEKELLAVACEQFLGKNVQDIKNVVLQTLEGHLRSILGT 82 (143)
T ss_dssp CCCCCCSCCCSCEEECCCEEEEECSSSCEEEECCEEEEEECCCSSCCHHHHHHHSSSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cceEEEEEECceEEEeCCcceeEcCCCCEEEEEEEEEEEECCCHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHhc
Confidence 56899999999999999885 89999999999999999983 22222223232 2 2445677889999999999999
Q ss_pred cChhHHhhhHHHHHHHHHHHHHHHhhcCCeEEEEEEeeccccCHHHHHHHHH
Q 022958 145 YNASQLITQRETVSREIRKILTERAANFNIALDDVSITSLTFGKEFTSAIEA 196 (289)
Q Consensus 145 ~~~~ei~~~R~~i~~~v~~~l~~~l~~~Gi~v~~v~I~~i~~p~~~~~aie~ 196 (289)
++++|++++|++|++.+.+.+++.+.+||++|.+|.|++|++|+++.+||+.
T Consensus 83 ~tldeils~R~~i~~~v~~~~~~~~~~~Gi~V~~v~IkdI~~p~~~~~am~~ 134 (143)
T 1win_A 83 LTVEQIYQDRDQFAKLVREVAAPDVGRMGIEILSFTIKDVYDKVDYLSSLGK 134 (143)
T ss_dssp SCHHHHHHTHHHHHHHHHHHHHHHHTTTTEEEEEEECCCEECTTCHHHHHCC
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEeecChHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999963
No 4
>2rpb_A Hypothetical membrane protein; SPFH domain; NMR {Pyrococcus horikoshii}
Probab=99.71 E-value=4.7e-18 Score=129.18 Aligned_cols=109 Identities=13% Similarity=0.171 Sum_probs=97.3
Q ss_pred EEeeeeeeeeeee-cccccCCcEEEEEEEEEeecCCCCHHHHHHHhCccccccccchHHHHHHHHHHhhcChhHHhhhHH
Q 022958 77 IYDVRARPHLVES-TSGSRDLQMVKIGLRVLTRPVADKLPTVYRALGENYNERVLPSIIHETLKAVVAQYNASQLITQRE 155 (289)
Q Consensus 77 ~~~~~~~~~~~~~-~~~T~D~~~v~v~~~v~y~i~~~~~~~~~~~~g~~~~~~~l~~~~~~~lr~~~~~~~~~ei~~~R~ 155 (289)
++|++.++++++. .+.|+|++++.++++++||| .|+..++.++ .+.+..+.+.+++++|+++|+++++|++++|+
T Consensus 4 ~vd~r~~~~~~~~~~v~T~D~~~v~v~~~v~~rI--~dp~~~~~~v--~~~~~~l~~~~~~~lR~vig~~~l~ei~~~R~ 79 (113)
T 2rpb_A 4 HVDLREHVIDVPPQEVICKDNVVVTVDAVVYYQV--IDPVKAVYNV--SDFLMAIVKLAQTNLRAIIGEMELDETLSGRD 79 (113)
T ss_dssp CCCCCCEEEECCCEEEECTTSCEEEECEEEEEEE--SCTTTCTTTT--THHHHHHHHHHHHHHHHHHTSCCTTHHHHCHH
T ss_pred EEeeeEEEEecCcceeEeCCCCEEEEEEEEEEEE--CCHHHHHHhc--CCHHHHHHHHHHHHHHHHHhcCcHHHHHhCHH
Confidence 5788888888876 58999999999999999996 5566666544 34556799999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhcCCeEEEEEEeeccccCHH
Q 022958 156 TVSREIRKILTERAANFNIALDDVSITSLTFGKE 189 (289)
Q Consensus 156 ~i~~~v~~~l~~~l~~~Gi~v~~v~I~~i~~p~~ 189 (289)
+|++.+++.+++.+++||++|.+|.|++++||++
T Consensus 80 ~i~~~i~~~l~~~~~~~Gi~v~~v~I~~i~~p~e 113 (113)
T 2rpb_A 80 IINARLREELDKITDRWGVKITRVEIQRIDPPKD 113 (113)
T ss_dssp HHHHHHHHHHHHHHGGGTEECCCEEECCCBCCCC
T ss_pred HHHHHHHHHHHHHHHhcCeEEEEEEEEEecCCCC
Confidence 9999999999999999999999999999999974
No 5
>2zuo_A MVP, major vault protein; repeat domains, protein-protein complex, cytoplasm, ribonucleoprotein, structural protein; 3.50A {Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A
Probab=98.47 E-value=1.5e-05 Score=77.17 Aligned_cols=156 Identities=11% Similarity=0.040 Sum_probs=101.1
Q ss_pred EEEecCCeEEEEEccccCccceeeCCcceEEccccCccEEEeeee---------ee---------eeeeecccccCCcEE
Q 022958 38 LYNVEGGHRAIMFNRITGVKDKVYPEGTHLMVPWFERPVIYDVRA---------RP---------HLVESTSGSRDLQMV 99 (289)
Q Consensus 38 ~~~V~~g~~gVv~~r~gg~~~~~~~pG~~~~~P~~~~v~~~~~~~---------~~---------~~~~~~~~T~D~~~v 99 (289)
.|.||.+...-+++.-.+..+.+++|-+.+.-|- +.+..++.+- ++ +.-...+-|+|...+
T Consensus 459 ~~rvphnaaVqvyDy~~~~~RvvfGP~lv~L~Pd-E~ftvlsLSgg~PK~~~~i~sl~L~lGPdf~tD~i~vET~DhArL 537 (861)
T 2zuo_A 459 SYRVPHNAAVQVYDYRAKRARVVFGPELVTLDPE-EQFTVLSLSAGRPKRPHARRALCLLLGPDFFTDVITIETADHARL 537 (861)
T ss_dssp EEECCTTEEEEEECSSSCCEEEECSSCEEECCSS-CEECCEEECCSSSCCTTSEEESSEECSSCEEEEEEEEECTTCCEE
T ss_pred EEEcCCCeEEEEEecCCCceEEEECCcEEEECCC-ccEEEEEecCCCCCCCCceEEEEeeeCCccceEEEEEEEcCceEE
Confidence 4678888877777522345566889998777775 4444444321 11 111124779999999
Q ss_pred EEEEEEEeecCC---CCHHHHHHHhCccccccccchHHHHHHHHHHhhcChhHHhhhHHHHHHH-HHH------------
Q 022958 100 KIGLRVLTRPVA---DKLPTVYRALGENYNERVLPSIIHETLKAVVAQYNASQLITQRETVSRE-IRK------------ 163 (289)
Q Consensus 100 ~v~~~v~y~i~~---~~~~~~~~~~g~~~~~~~l~~~~~~~lr~~~~~~~~~ei~~~R~~i~~~-v~~------------ 163 (289)
.+..+..|+++. ++..+.-.-|...++-..+-..+.+-+|..+++.+.++++.+-..|-.. +.-
T Consensus 538 ~L~LsYnW~F~~~d~~~~~~~~k~Fsv~DFvGd~Ck~iaSriR~aVA~~~Fd~FHknsa~iir~aVFg~~~~~~~~~~~~ 617 (861)
T 2zuo_A 538 QLQLAYNWHFELKNRNDPAEAAKLFSVPDFVGDACKAIASRVRGAVASVTFDDFHKNSARIIRMAVFGFEMSEDTGPDGT 617 (861)
T ss_dssp EEEEEEEEEECCTTTTCHHHHHGGGSSSSHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHSSCCC----------
T ss_pred EEEEEEEEEEeccCCCChhhhhhhccCCchHHHHHHHHHHHHHHHhhcCcHHHHhhhHHHHHHHhhcCCCcccccccccc
Confidence 999999998755 3444333334444443446788999999999999999999775555221 110
Q ss_pred ---HHHH--HhhcCCeEEEEEEeeccccCHH-HHHHH
Q 022958 164 ---ILTE--RAANFNIALDDVSITSLTFGKE-FTSAI 194 (289)
Q Consensus 164 ---~l~~--~l~~~Gi~v~~v~I~~i~~p~~-~~~ai 194 (289)
..++ .|...|+.|.+|.|+++.|-++ .++++
T Consensus 618 ~~~~~~~~~~F~~N~lvitsVDvqsvEpvDqrtrd~L 654 (861)
T 2zuo_A 618 LLPKARDQAVFPQNGLVVSSVDVQSVEPVDQRTRDAL 654 (861)
T ss_dssp ---CCCSCEECTTTCEEEEEEEEEEEEESSHHHHHHH
T ss_pred cccCcccceEEccCCeEEEEEeeeeecccCHHHHHHH
Confidence 1111 2467799999999999998654 55554
No 6
>2kk7_A V-type ATP synthase subunit E; A1AO ATP synthase, ATP synthesis, hydrogen ION transport, ION transport, transport, hydrolase; NMR {Methanocaldococcus jannaschii}
Probab=61.73 E-value=14 Score=22.80 Aligned_cols=9 Identities=33% Similarity=0.593 Sum_probs=3.2
Q ss_pred hHHHHHHHH
Q 022958 227 GEATSAQLI 235 (289)
Q Consensus 227 aeaea~~~~ 235 (289)
|+++|.+++
T Consensus 30 A~~eA~~Ii 38 (52)
T 2kk7_A 30 AEAEKAKIL 38 (52)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 333333333
No 7
>2b5u_A Colicin E3; high resolution colicin E3, ribosome inactivation, ribosome inhibitor, hydrolase; HET: CIT; 2.30A {Escherichia coli} SCOP: b.101.1.1 b.110.1.1 h.4.9.1 PDB: 1jch_A* 1ujw_B* 2ysu_B 1e44_B 2xfz_Y* 2xg1_Y*
Probab=61.67 E-value=38 Score=31.12 Aligned_cols=34 Identities=12% Similarity=0.020 Sum_probs=28.4
Q ss_pred cCCeEEEEEEeeccccCHHHHHHHHHHHHHHHHH
Q 022958 171 NFNIALDDVSITSLTFGKEFTSAIEAKQVAAQEA 204 (289)
Q Consensus 171 ~~Gi~v~~v~I~~i~~p~~~~~aie~~~~a~q~~ 204 (289)
..|++-.-|.+.+|-.|.++.+..|+...++|+.
T Consensus 277 ~Sg~ePlYISvs~ilt~~elkqrqeee~r~~qew 310 (551)
T 2b5u_A 277 DSGHNAVYVSVSDVLSPDQVKQRQDEENRRQQEW 310 (551)
T ss_dssp GGCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCceEEEEeecCCHHHHHHHHHHHHHHHHHh
Confidence 4588888899999999999999998777777765
No 8
>2kk7_A V-type ATP synthase subunit E; A1AO ATP synthase, ATP synthesis, hydrogen ION transport, ION transport, transport, hydrolase; NMR {Methanocaldococcus jannaschii}
Probab=41.29 E-value=60 Score=19.84 Aligned_cols=21 Identities=33% Similarity=0.488 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHhhhHHH
Q 022958 210 IVEKAEQDKRSAIIRAQGEAT 230 (289)
Q Consensus 210 ~i~~A~aea~~~~~~A~aeae 230 (289)
.+..|+++++.-+..|+.+|+
T Consensus 26 Il~eA~~eA~~Ii~eA~~~Ae 46 (52)
T 2kk7_A 26 IISEAEAEKAKILEKAKEEAE 46 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555555554443
No 9
>2k6i_A Uncharacterized protein MJ0223; H subunit, A1AO ATP synthase, V1VO ATPase, F1FO ATP synthase, structural protein; NMR {Methanocaldococcus jannaschii}
Probab=39.47 E-value=50 Score=20.68 Aligned_cols=21 Identities=24% Similarity=0.191 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHhhhHHH
Q 022958 210 IVEKAEQDKRSAIIRAQGEAT 230 (289)
Q Consensus 210 ~i~~A~aea~~~~~~A~aeae 230 (289)
.+..|+.+++..+..|+.+|+
T Consensus 31 iVeeA~~ea~~ii~eAreeAk 51 (56)
T 2k6i_A 31 EIEEAKNRAEQIKAEAIEEAK 51 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555555555443
No 10
>2zuo_A MVP, major vault protein; repeat domains, protein-protein complex, cytoplasm, ribonucleoprotein, structural protein; 3.50A {Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A
Probab=37.72 E-value=1.5e+02 Score=29.19 Aligned_cols=12 Identities=8% Similarity=0.335 Sum_probs=6.3
Q ss_pred ccCccEEEeeee
Q 022958 71 WFERPVIYDVRA 82 (289)
Q Consensus 71 ~~~~v~~~~~~~ 82 (289)
|...++.+.++.
T Consensus 522 f~tD~i~vET~D 533 (861)
T 2zuo_A 522 FFTDVITIETAD 533 (861)
T ss_dssp EEEEEEEEECTT
T ss_pred cceEEEEEEEcC
Confidence 345555665543
No 11
>3v6i_A V-type ATP synthase subunit E; peripheral stator stalk, right handed coiled-coil, ATPase/SY ATP binding, membrane, hydrolase; 2.25A {Thermus thermophilus} PDB: 3k5b_E 3j0j_J
Probab=36.58 E-value=44 Score=26.23 Aligned_cols=8 Identities=25% Similarity=0.322 Sum_probs=3.7
Q ss_pred CCEEEEcC
Q 022958 265 ANKVFLNS 272 (289)
Q Consensus 265 ~~~i~l~~ 272 (289)
+..+++.+
T Consensus 117 ~~~vv~~~ 124 (187)
T 3v6i_A 117 AKALVANP 124 (187)
T ss_dssp CCEEEECT
T ss_pred CCeEEECH
Confidence 34444444
No 12
>3v6i_B V-type ATP synthase, subunit (VAPC-therm); peripheral stator stalk, right handed coiled-coil, ATPase/SY ATP binding, membrane, hydrolase; 2.25A {Thermus thermophilus} PDB: 3k5b_G 3j0j_I
Probab=33.69 E-value=1.2e+02 Score=21.31 Aligned_cols=12 Identities=25% Similarity=0.578 Sum_probs=4.7
Q ss_pred HHHHHHHHHHHH
Q 022958 211 VEKAEQDKRSAI 222 (289)
Q Consensus 211 i~~A~aea~~~~ 222 (289)
+..|++++.+-+
T Consensus 33 v~~AEAeA~ril 44 (105)
T 3v6i_B 33 VKRAEAEAKALL 44 (105)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 344444433333
No 13
>3v6i_B V-type ATP synthase, subunit (VAPC-therm); peripheral stator stalk, right handed coiled-coil, ATPase/SY ATP binding, membrane, hydrolase; 2.25A {Thermus thermophilus} PDB: 3k5b_G 3j0j_I
Probab=29.89 E-value=1.5e+02 Score=20.95 Aligned_cols=16 Identities=25% Similarity=0.464 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHHHhh
Q 022958 211 VEKAEQDKRSAIIRAQ 226 (289)
Q Consensus 211 i~~A~aea~~~~~~A~ 226 (289)
++.|+.++.+.+.+|+
T Consensus 22 lE~Ar~eA~~~v~~AE 37 (105)
T 3v6i_B 22 LEAAKKEAEERVKRAE 37 (105)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444444444444443
No 14
>4efa_E V-type proton ATPase subunit E; heterotrimer, peripheral stalk, vacuolar ATPase, hydrolase; 2.82A {Saccharomyces cerevisiae} PDB: 4dl0_J 2kz9_A
Probab=29.13 E-value=1.9e+02 Score=23.41 Aligned_cols=9 Identities=0% Similarity=0.213 Sum_probs=5.0
Q ss_pred CHHHHHHHH
Q 022958 187 GKEFTSAIE 195 (289)
Q Consensus 187 p~~~~~aie 195 (289)
|.++.+.++
T Consensus 10 ~~~v~~~i~ 18 (233)
T 4efa_E 10 PNQVNDELN 18 (233)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 455666663
No 15
>3j20_A 30S ribosomal protein S3AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=28.66 E-value=2.2e+02 Score=22.66 Aligned_cols=82 Identities=11% Similarity=0.136 Sum_probs=52.3
Q ss_pred ecccccCCcEEEEEEEEEeecCCCCHHHHHHHhCccccccccchHHHHHHHHHHhhcChhHHhhhH--HHHHHHHHHHHH
Q 022958 89 STSGSRDLQMVKIGLRVLTRPVADKLPTVYRALGENYNERVLPSIIHETLKAVVAQYNASQLITQR--ETVSREIRKILT 166 (289)
Q Consensus 89 ~~~~T~D~~~v~v~~~v~y~i~~~~~~~~~~~~g~~~~~~~l~~~~~~~lr~~~~~~~~~ei~~~R--~~i~~~v~~~l~ 166 (289)
.++.|+||..+.+-+.+.-.- .. ... -...++....+.+.+.+++.+++|+...- +.++.++....+
T Consensus 107 vdVkT~DGy~lRvf~i~fT~k-ra---------~~s-Q~~~IRk~m~eii~~~~~~~~l~e~V~~li~~~i~~eI~k~~k 175 (198)
T 3j20_A 107 FNITTKDGYKLRVMAMAIAMR-RI---------QTS-QERAIRKIMQEIIYKKAEELNFKDFVLESVNGKIAAEIAKEAK 175 (198)
T ss_dssp EEEECTTSCEEEEEEEEEECS-SC---------CCT-HHHHHHHHHHHHHHHHHHHSCHHHHHHHHHSHHHHHHHHHHHH
T ss_pred EEEEecCCCEEEEEEEEEEec-cc---------cch-hhhHHHHHHHHHHHHHhccCCHHHHHHHHcCChHHHHHHHhhC
Confidence 357799999998876654331 11 111 12247788888899999999999999743 677777777665
Q ss_pred HHhhcCCeEEEEEEe
Q 022958 167 ERAANFNIALDDVSI 181 (289)
Q Consensus 167 ~~l~~~Gi~v~~v~I 181 (289)
.-.-=.-++|..+.+
T Consensus 176 ~IyPl~~V~IrKvKv 190 (198)
T 3j20_A 176 KIYPLRKAEIRKIKV 190 (198)
T ss_dssp HHSCEEEEEEEEEEE
T ss_pred cccccceEEEEEEEE
Confidence 542212244444443
No 16
>4efa_G V-type proton ATPase subunit G; heterotrimer, peripheral stalk, vacuolar ATPase, hydrolase; 2.82A {Saccharomyces cerevisiae} PDB: 4dl0_K 2k88_A 2kwy_A
Probab=26.55 E-value=1.4e+02 Score=21.69 Aligned_cols=8 Identities=13% Similarity=0.335 Sum_probs=3.6
Q ss_pred HHHHHHHH
Q 022958 189 EFTSAIEA 196 (289)
Q Consensus 189 ~~~~aie~ 196 (289)
.|++-+.+
T Consensus 11 GIQqLL~A 18 (119)
T 4efa_G 11 GIATLLQA 18 (119)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 34444543
No 17
>2xzm_4 40S ribosomal protein S3A; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_4
Probab=25.99 E-value=1.6e+02 Score=24.68 Aligned_cols=79 Identities=9% Similarity=0.161 Sum_probs=46.8
Q ss_pred ecccccCCcEEEEEEEEEeecCC---CCHHHHHHHhCccccccccchHHHHHHHHHHhhcChhHHhhhHHHHHHHHHHHH
Q 022958 89 STSGSRDLQMVKIGLRVLTRPVA---DKLPTVYRALGENYNERVLPSIIHETLKAVVAQYNASQLITQRETVSREIRKIL 165 (289)
Q Consensus 89 ~~~~T~D~~~v~v~~~v~y~i~~---~~~~~~~~~~g~~~~~~~l~~~~~~~lr~~~~~~~~~ei~~~R~~i~~~v~~~l 165 (289)
.++.|.||..+.+-+.+.-.-.. ...... .|....-...|+....+.+.+.+++.++.|++..- +...+..++
T Consensus 128 vdVkT~DGY~lRvf~i~fT~kr~~~~~q~kkt--~Ya~~SQir~IRkkm~eii~~~~~~~dl~e~V~kl--i~~~i~keI 203 (265)
T 2xzm_4 128 VDCKTNDGYIIRVFTLAFTKKTSAGKQSSTST--CYAKSSQVRAIRRKINTFITNEAAKLGIAEFSKNL--IGEDYTKKI 203 (265)
T ss_dssp EEEEETTTEEEEEEEEEEECCCSSCCSCSSCC--BCCTHHHHHHHHHHHHHHHHHHHHTCCHHHHHHHH--HTTHHHHHH
T ss_pred EEEEeCCCcEEEEEEEEEEeccccccccccee--eeccccchHHHHHHHHHHHHHHhhhCCHHHHHHHH--ccchHHHHH
Confidence 35779999999887665444222 211110 01111122347788888899999999999999632 344455555
Q ss_pred HHHhhc
Q 022958 166 TERAAN 171 (289)
Q Consensus 166 ~~~l~~ 171 (289)
...+..
T Consensus 204 ~k~~k~ 209 (265)
T 2xzm_4 204 EKETKN 209 (265)
T ss_dssp HHHHTT
T ss_pred HHHhhh
Confidence 555544
No 18
>2acm_B Mucin-1; auto-catalytic proteolysis, structural protein; NMR {Homo sapiens}
Probab=25.98 E-value=82 Score=19.59 Aligned_cols=21 Identities=29% Similarity=0.619 Sum_probs=14.2
Q ss_pred hhcCCeEEEEEEeeccccCHH
Q 022958 169 AANFNIALDDVSITSLTFGKE 189 (289)
Q Consensus 169 l~~~Gi~v~~v~I~~i~~p~~ 189 (289)
...|.+.|.++.++|+.+|..
T Consensus 32 ~~~YnL~IS~vsV~dv~FPsS 52 (55)
T 2acm_B 32 ASRYNLTISDVSVSDVPFPFS 52 (55)
T ss_dssp HHHHCCCEEEEEEECC-----
T ss_pred cccccceecceeEEeccCCCc
Confidence 348899999999999999864
No 19
>3bk6_A PH stomatin; archaea, trimer, coiled- coil, flotillin, SPFH, membrane fusion, trafficking, transmembrane, membrane protein; 3.20A {Pyrococcus horikoshii}
Probab=25.93 E-value=1.8e+02 Score=22.49 Aligned_cols=64 Identities=16% Similarity=0.189 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHHH-hhcCCeEEEEEEeeccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 022958 156 TVSREIRKILTER-AANFNIALDDVSITSLTFGKEFTSAIEAKQVAAQEAERAKYIVEKAEQDKRSAIIRAQG 227 (289)
Q Consensus 156 ~i~~~v~~~l~~~-l~~~Gi~v~~v~I~~i~~p~~~~~aie~~~~a~q~~~~a~~~i~~A~aea~~~~~~A~a 227 (289)
++.+.+.+.+... +.=..+.|.++.+++ .+-+.+.+.+++.+.++. .+..|++++++..+.|++
T Consensus 88 ~i~~~l~~~~~~~GI~v~~v~I~~i~~p~-ev~~a~~~~~~Aere~~A-------~i~~Aege~~a~~~~a~a 152 (188)
T 3bk6_A 88 QLQRIIDEATDPWGIKVTAVEIKDVELPA-GMQKAMARQAEAERERRA-------RITLAEAERQAAEKLREA 152 (188)
T ss_dssp HHHHHHHHHTGGGTEEEEEEEEEEEEEET-THHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCeEEEEEEEEecCCCH-HHHHHHHHHHHHHHHHHH-------HHHHhHHHHHHHHHHHHH
Confidence 4555566666442 234468999999876 666777777876653322 355577777776666655
Done!