Query 022960
Match_columns 289
No_of_seqs 432 out of 1342
Neff 11.7
Searched_HMMs 46136
Date Fri Mar 29 07:25:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022960.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/022960hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4667 Predicted esterase [Li 100.0 2.5E-35 5.3E-40 205.9 17.2 252 21-272 9-260 (269)
2 PLN02385 hydrolase; alpha/beta 100.0 1.2E-33 2.6E-38 227.2 25.7 254 18-272 57-347 (349)
3 PLN02298 hydrolase, alpha/beta 100.0 6.7E-33 1.4E-37 221.7 25.9 255 18-273 28-320 (330)
4 PRK00870 haloalkane dehalogena 100.0 5.2E-33 1.1E-37 219.7 23.4 246 19-270 18-301 (302)
5 PHA02857 monoglyceride lipase; 100.0 2E-32 4.4E-37 213.9 23.4 242 27-270 5-273 (276)
6 TIGR02240 PHA_depoly_arom poly 100.0 1.8E-32 4E-37 213.9 21.5 237 30-273 9-269 (276)
7 PRK10749 lysophospholipase L2; 100.0 4.3E-32 9.2E-37 216.3 22.3 248 21-270 29-329 (330)
8 PLN02824 hydrolase, alpha/beta 100.0 3.1E-32 6.8E-37 214.6 21.0 232 31-269 16-293 (294)
9 PRK03592 haloalkane dehalogena 100.0 3.1E-31 6.6E-36 209.1 21.2 232 31-271 15-290 (295)
10 KOG1455 Lysophospholipase [Lip 100.0 5.6E-31 1.2E-35 194.9 20.8 250 19-270 24-312 (313)
11 PRK13604 luxD acyl transferase 100.0 5.2E-31 1.1E-35 200.7 21.3 225 23-256 10-249 (307)
12 PLN02965 Probable pheophorbida 100.0 3.5E-31 7.6E-36 204.2 20.4 218 47-270 5-253 (255)
13 PRK06489 hypothetical protein; 100.0 5E-31 1.1E-35 212.7 20.4 250 15-271 29-358 (360)
14 TIGR03343 biphenyl_bphD 2-hydr 100.0 6.3E-31 1.4E-35 206.3 19.7 225 39-268 24-281 (282)
15 TIGR03056 bchO_mg_che_rel puta 100.0 1.7E-30 3.7E-35 203.5 20.8 234 29-268 12-278 (278)
16 PRK10673 acyl-CoA esterase; Pr 100.0 1.2E-30 2.6E-35 201.8 18.8 218 43-269 14-254 (255)
17 COG1647 Esterase/lipase [Gener 100.0 5E-31 1.1E-35 185.7 14.6 215 46-268 16-242 (243)
18 PLN02679 hydrolase, alpha/beta 100.0 3.6E-30 7.9E-35 207.2 21.5 232 32-269 70-356 (360)
19 KOG4178 Soluble epoxide hydrol 100.0 8.3E-30 1.8E-34 191.7 20.9 241 24-270 23-320 (322)
20 COG2267 PldB Lysophospholipase 100.0 1.4E-29 3E-34 196.7 22.2 250 21-272 8-296 (298)
21 PLN02578 hydrolase 100.0 5.5E-30 1.2E-34 206.0 20.6 230 30-268 73-353 (354)
22 PLN03087 BODYGUARD 1 domain co 100.0 8E-30 1.7E-34 208.0 21.6 238 27-269 180-478 (481)
23 PLN02652 hydrolase; alpha/beta 100.0 3.7E-29 7.9E-34 201.7 25.0 249 21-272 109-389 (395)
24 TIGR03611 RutD pyrimidine util 100.0 5.4E-30 1.2E-34 198.3 18.6 218 43-268 11-256 (257)
25 PRK03204 haloalkane dehalogena 100.0 1.3E-29 2.8E-34 198.2 20.5 237 22-267 14-285 (286)
26 PLN03084 alpha/beta hydrolase 100.0 3.6E-29 7.8E-34 200.5 21.3 235 27-268 109-382 (383)
27 TIGR02427 protocat_pcaD 3-oxoa 100.0 2E-29 4.4E-34 194.2 17.0 226 35-268 2-251 (251)
28 PLN02511 hydrolase 100.0 1.6E-28 3.4E-33 198.9 21.3 255 19-273 68-368 (388)
29 PRK10349 carboxylesterase BioH 100.0 5.8E-29 1.3E-33 192.3 17.8 214 42-268 9-254 (256)
30 PRK05077 frsA fermentation/res 100.0 5.1E-28 1.1E-32 196.7 24.0 237 19-271 165-413 (414)
31 TIGR01250 pro_imino_pep_2 prol 100.0 4.3E-28 9.2E-33 190.8 19.4 234 30-268 9-288 (288)
32 PLN02211 methyl indole-3-aceta 100.0 1.2E-27 2.5E-32 185.4 21.4 232 31-269 5-269 (273)
33 PF12697 Abhydrolase_6: Alpha/ 100.0 5.4E-29 1.2E-33 189.0 13.0 206 48-261 1-227 (228)
34 KOG4409 Predicted hydrolase/ac 100.0 1.2E-27 2.6E-32 180.7 19.0 235 31-269 74-363 (365)
35 KOG1454 Predicted hydrolase/ac 100.0 1.1E-27 2.4E-32 187.9 19.1 222 44-270 57-324 (326)
36 TIGR01607 PST-A Plasmodium sub 100.0 2.4E-27 5.1E-32 188.5 21.0 242 27-268 2-331 (332)
37 PRK07581 hypothetical protein; 100.0 4.7E-28 1E-32 194.4 17.1 235 31-272 24-338 (339)
38 PRK11126 2-succinyl-6-hydroxy- 100.0 9.4E-28 2E-32 184.1 17.4 209 45-269 2-241 (242)
39 PRK08775 homoserine O-acetyltr 100.0 5.8E-28 1.2E-32 193.8 16.7 236 30-271 43-340 (343)
40 TIGR01249 pro_imino_pep_1 prol 100.0 5.2E-27 1.1E-31 185.5 21.1 238 25-270 7-305 (306)
41 TIGR01738 bioH putative pimelo 100.0 1E-27 2.2E-32 184.2 16.1 209 46-267 5-245 (245)
42 PRK14875 acetoin dehydrogenase 100.0 2.2E-27 4.8E-32 193.3 17.8 230 31-269 117-370 (371)
43 PRK10985 putative hydrolase; P 100.0 7.3E-27 1.6E-31 185.7 20.0 250 20-271 29-321 (324)
44 TIGR03695 menH_SHCHC 2-succiny 100.0 3.5E-27 7.5E-32 181.6 17.0 215 45-268 1-251 (251)
45 TIGR01392 homoserO_Ac_trn homo 100.0 2.2E-27 4.9E-32 191.0 15.3 235 31-268 14-351 (351)
46 PLN02894 hydrolase, alpha/beta 100.0 8.4E-26 1.8E-30 183.8 24.1 232 34-274 93-389 (402)
47 TIGR03100 hydr1_PEP hydrolase, 100.0 5.5E-26 1.2E-30 176.3 21.5 239 23-268 3-273 (274)
48 PRK00175 metX homoserine O-ace 99.9 2.9E-26 6.2E-31 185.8 18.8 237 31-272 31-376 (379)
49 KOG4391 Predicted alpha/beta h 99.9 2.2E-26 4.7E-31 161.6 13.7 233 14-274 46-286 (300)
50 KOG1552 Predicted alpha/beta h 99.9 1.9E-25 4.1E-30 162.5 18.5 216 21-273 34-255 (258)
51 PRK10566 esterase; Provisional 99.9 7.7E-25 1.7E-29 168.6 19.1 207 44-271 26-249 (249)
52 PRK05855 short chain dehydroge 99.9 8.3E-25 1.8E-29 188.5 19.7 236 28-271 8-293 (582)
53 PRK11071 esterase YqiA; Provis 99.9 1.3E-24 2.7E-29 158.7 16.9 186 46-268 2-189 (190)
54 PLN02980 2-oxoglutarate decarb 99.9 1.5E-24 3.3E-29 201.4 21.2 219 44-271 1370-1640(1655)
55 PLN02872 triacylglycerol lipas 99.9 1.7E-24 3.8E-29 173.9 16.9 254 18-272 40-391 (395)
56 COG1506 DAP2 Dipeptidyl aminop 99.9 5.9E-24 1.3E-28 181.7 17.5 241 17-273 360-619 (620)
57 KOG2382 Predicted alpha/beta h 99.9 1.6E-23 3.4E-28 158.2 17.2 224 43-270 50-313 (315)
58 COG0429 Predicted hydrolase of 99.9 1.9E-23 4.1E-28 157.2 15.7 253 20-272 47-342 (345)
59 KOG2984 Predicted hydrolase [G 99.9 2.3E-24 4.9E-29 149.8 9.6 232 31-269 29-275 (277)
60 PF12695 Abhydrolase_5: Alpha/ 99.9 2.9E-23 6.2E-28 146.5 15.5 142 47-251 1-145 (145)
61 TIGR03101 hydr2_PEP hydrolase, 99.9 8.5E-22 1.8E-26 149.8 20.0 130 24-154 2-137 (266)
62 COG2945 Predicted hydrolase of 99.9 3.3E-22 7.1E-27 138.3 15.9 195 22-268 4-205 (210)
63 KOG1838 Alpha/beta hydrolase [ 99.9 2E-21 4.4E-26 151.8 21.5 256 16-271 87-389 (409)
64 PF00326 Peptidase_S9: Prolyl 99.9 1.7E-22 3.6E-27 151.6 15.0 195 63-273 3-212 (213)
65 TIGR01836 PHA_synth_III_C poly 99.9 1.5E-21 3.3E-26 157.1 18.1 222 44-269 61-349 (350)
66 PRK11460 putative hydrolase; P 99.9 3E-21 6.5E-26 145.8 18.3 174 44-272 15-210 (232)
67 PRK06765 homoserine O-acetyltr 99.9 1.9E-21 4.2E-26 156.4 17.7 232 33-269 41-387 (389)
68 KOG2564 Predicted acetyltransf 99.9 3.4E-21 7.3E-26 140.9 15.6 241 23-271 51-328 (343)
69 PF05448 AXE1: Acetyl xylan es 99.9 1.7E-20 3.6E-25 146.8 19.8 236 16-270 50-320 (320)
70 PF00561 Abhydrolase_1: alpha/ 99.9 6.6E-22 1.4E-26 150.5 10.3 187 75-264 1-229 (230)
71 PF01738 DLH: Dienelactone hyd 99.9 2.2E-20 4.7E-25 140.6 17.5 179 44-271 13-218 (218)
72 PF06500 DUF1100: Alpha/beta h 99.9 2E-20 4.4E-25 147.3 16.1 235 19-271 162-410 (411)
73 TIGR01838 PHA_synth_I poly(R)- 99.9 1.3E-19 2.9E-24 149.8 19.4 205 44-253 187-457 (532)
74 COG0412 Dienelactone hydrolase 99.8 7.6E-19 1.6E-23 132.1 21.3 199 23-272 3-235 (236)
75 PRK07868 acyl-CoA synthetase; 99.8 1.7E-19 3.6E-24 162.8 19.5 225 44-273 66-364 (994)
76 PRK10115 protease 2; Provision 99.8 7.7E-19 1.7E-23 151.4 22.3 242 19-274 413-679 (686)
77 TIGR02821 fghA_ester_D S-formy 99.8 1.5E-18 3.2E-23 135.0 21.4 225 22-269 13-273 (275)
78 COG3208 GrsT Predicted thioest 99.8 1.3E-19 2.8E-24 131.4 12.8 221 42-269 4-235 (244)
79 PLN00021 chlorophyllase 99.8 3.4E-18 7.3E-23 133.8 21.1 195 34-274 38-287 (313)
80 PLN02442 S-formylglutathione h 99.8 3E-18 6.5E-23 133.4 20.1 202 30-253 27-264 (283)
81 PRK10162 acetyl esterase; Prov 99.8 4.5E-18 9.8E-23 134.7 20.9 227 20-271 55-316 (318)
82 PF02230 Abhydrolase_2: Phosph 99.8 6.3E-19 1.4E-23 132.2 14.4 177 44-270 13-215 (216)
83 TIGR01840 esterase_phb esteras 99.8 7.7E-19 1.7E-23 131.4 13.5 171 44-238 12-195 (212)
84 COG3458 Acetyl esterase (deace 99.8 2.4E-18 5.1E-23 125.6 15.1 242 12-270 46-317 (321)
85 COG0596 MhpC Predicted hydrola 99.8 1E-17 2.2E-22 130.0 19.4 216 45-267 21-279 (282)
86 TIGR00976 /NonD putative hydro 99.8 1.2E-17 2.5E-22 142.0 19.3 128 27-155 1-136 (550)
87 PF02273 Acyl_transf_2: Acyl t 99.8 3.4E-17 7.4E-22 117.9 18.4 225 25-256 5-242 (294)
88 PF06342 DUF1057: Alpha/beta h 99.8 9.5E-17 2.1E-21 118.9 18.6 125 21-151 5-137 (297)
89 PF06821 Ser_hydrolase: Serine 99.7 3.3E-17 7.1E-22 116.7 12.1 155 48-255 1-157 (171)
90 COG0400 Predicted esterase [Ge 99.7 1.2E-16 2.6E-21 116.3 14.6 173 44-271 17-206 (207)
91 PF05728 UPF0227: Uncharacteri 99.7 2.6E-16 5.6E-21 113.2 15.5 183 48-267 2-186 (187)
92 COG4757 Predicted alpha/beta h 99.7 2.3E-16 5.1E-21 112.6 11.4 238 25-267 8-280 (281)
93 PF09752 DUF2048: Uncharacteri 99.7 3E-15 6.5E-20 115.2 17.6 222 44-268 91-347 (348)
94 COG2021 MET2 Homoserine acetyl 99.7 3.3E-15 7.1E-20 115.1 17.1 235 32-269 35-367 (368)
95 PF02129 Peptidase_S15: X-Pro 99.7 8.1E-16 1.8E-20 119.5 14.1 123 31-155 1-140 (272)
96 PF08538 DUF1749: Protein of u 99.7 1.7E-15 3.7E-20 114.9 15.1 222 44-268 32-303 (303)
97 TIGR01849 PHB_depoly_PhaZ poly 99.7 5E-15 1.1E-19 118.2 18.2 218 46-269 103-405 (406)
98 TIGR01839 PHA_synth_II poly(R) 99.7 3.6E-15 7.7E-20 122.5 17.1 106 44-154 214-331 (560)
99 KOG3043 Predicted hydrolase re 99.7 2.6E-15 5.6E-20 107.0 13.1 186 35-271 28-241 (242)
100 TIGR03230 lipo_lipase lipoprot 99.7 1.6E-15 3.5E-20 122.3 13.4 108 44-151 40-154 (442)
101 PF03096 Ndr: Ndr family; Int 99.7 5.9E-15 1.3E-19 110.9 14.3 235 26-269 3-278 (283)
102 PF07859 Abhydrolase_3: alpha/ 99.7 1.9E-15 4.1E-20 113.3 11.7 99 48-153 1-112 (211)
103 PF06028 DUF915: Alpha/beta hy 99.6 3.4E-14 7.3E-19 107.2 17.3 203 44-267 10-252 (255)
104 PRK05371 x-prolyl-dipeptidyl a 99.6 1.7E-14 3.7E-19 125.6 17.8 206 65-274 270-523 (767)
105 cd00707 Pancreat_lipase_like P 99.6 1.8E-15 4E-20 116.9 10.5 109 44-152 35-148 (275)
106 PF12715 Abhydrolase_7: Abhydr 99.6 7.3E-15 1.6E-19 114.3 13.2 134 16-149 82-258 (390)
107 KOG2624 Triglyceride lipase-ch 99.6 2.7E-14 5.9E-19 113.8 16.7 135 17-151 43-199 (403)
108 PF00975 Thioesterase: Thioest 99.6 5.8E-15 1.3E-19 112.2 12.4 211 46-267 1-229 (229)
109 KOG1515 Arylacetamide deacetyl 99.6 6.7E-14 1.5E-18 109.3 17.7 238 20-270 61-335 (336)
110 KOG2931 Differentiation-relate 99.6 2.3E-13 4.9E-18 101.1 18.9 241 22-270 22-306 (326)
111 PF06057 VirJ: Bacterial virul 99.6 6E-14 1.3E-18 98.9 14.6 183 46-269 3-191 (192)
112 COG3571 Predicted hydrolase of 99.6 2.7E-13 5.9E-18 91.4 16.9 183 41-269 9-210 (213)
113 COG0657 Aes Esterase/lipase [L 99.6 4.2E-13 9.1E-18 106.7 20.2 216 31-268 60-308 (312)
114 PF12146 Hydrolase_4: Putative 99.6 6.3E-15 1.4E-19 90.5 7.2 76 32-109 1-79 (79)
115 KOG2281 Dipeptidyl aminopeptid 99.6 2.5E-13 5.5E-18 110.8 17.5 226 23-269 614-866 (867)
116 KOG2100 Dipeptidyl aminopeptid 99.6 2.1E-13 4.6E-18 118.5 18.2 228 20-273 498-750 (755)
117 KOG2551 Phospholipase/carboxyh 99.6 1.6E-13 3.4E-18 98.1 14.0 181 44-273 4-223 (230)
118 PF08840 BAAT_C: BAAT / Acyl-C 99.6 5.1E-14 1.1E-18 104.7 12.2 169 102-272 4-212 (213)
119 PF12740 Chlorophyllase2: Chlo 99.6 1.3E-12 2.9E-17 97.5 18.7 166 42-253 14-207 (259)
120 PF10503 Esterase_phd: Esteras 99.6 6.5E-14 1.4E-18 103.2 11.4 169 44-237 15-195 (220)
121 COG3545 Predicted esterase of 99.5 1.4E-12 3E-17 89.9 15.5 172 45-269 2-178 (181)
122 PF10230 DUF2305: Uncharacteri 99.5 1.3E-12 2.8E-17 100.5 16.5 105 45-151 2-122 (266)
123 PF03403 PAF-AH_p_II: Platelet 99.5 1.1E-12 2.4E-17 105.5 16.5 178 43-272 98-360 (379)
124 TIGR03502 lipase_Pla1_cef extr 99.5 1.5E-13 3.2E-18 117.9 11.4 112 25-138 420-576 (792)
125 KOG4627 Kynurenine formamidase 99.5 7.6E-13 1.7E-17 93.1 10.7 183 38-251 59-247 (270)
126 PF03959 FSH1: Serine hydrolas 99.5 9.1E-13 2E-17 98.2 11.4 166 44-255 3-205 (212)
127 COG2936 Predicted acyl esteras 99.4 5.4E-12 1.2E-16 103.7 15.6 136 18-154 15-162 (563)
128 COG3243 PhaC Poly(3-hydroxyalk 99.4 3E-12 6.5E-17 100.3 12.3 109 44-155 106-221 (445)
129 KOG2112 Lysophospholipase [Lip 99.4 4.6E-12 9.9E-17 90.1 11.7 175 45-269 3-203 (206)
130 COG4099 Predicted peptidase [G 99.4 3.2E-12 7E-17 95.1 10.4 154 30-238 169-342 (387)
131 PRK04940 hypothetical protein; 99.4 7.5E-11 1.6E-15 83.3 15.5 173 48-268 2-178 (180)
132 PF07224 Chlorophyllase: Chlor 99.4 1.5E-11 3.2E-16 90.2 12.1 103 42-153 43-159 (307)
133 COG4814 Uncharacterized protei 99.4 6E-11 1.3E-15 86.5 14.9 201 47-269 47-286 (288)
134 COG1505 Serine proteases of th 99.3 1.8E-11 4E-16 99.7 12.3 240 17-271 389-647 (648)
135 PRK10252 entF enterobactin syn 99.3 3E-11 6.4E-16 113.8 15.7 218 42-271 1065-1294(1296)
136 COG3509 LpqC Poly(3-hydroxybut 99.3 2E-10 4.3E-15 86.1 16.6 126 23-151 36-179 (312)
137 KOG1553 Predicted alpha/beta h 99.3 8.2E-12 1.8E-16 94.9 8.6 126 22-154 214-348 (517)
138 COG4188 Predicted dienelactone 99.3 4.1E-12 8.8E-17 98.5 7.2 95 44-140 70-182 (365)
139 PF03583 LIP: Secretory lipase 99.3 2.8E-10 6E-15 88.8 16.0 66 209-276 217-287 (290)
140 PF07819 PGAP1: PGAP1-like pro 99.3 1.1E-10 2.4E-15 87.4 11.7 106 44-154 3-126 (225)
141 PTZ00472 serine carboxypeptida 99.2 1.9E-09 4E-14 89.5 19.2 118 32-152 60-217 (462)
142 PF05677 DUF818: Chlamydia CHL 99.2 1.1E-09 2.4E-14 84.0 16.2 114 21-138 111-236 (365)
143 KOG2565 Predicted hydrolases o 99.2 8.9E-10 1.9E-14 84.9 14.4 110 31-145 132-258 (469)
144 KOG2237 Predicted serine prote 99.2 5.3E-10 1.1E-14 91.9 12.8 242 19-272 438-707 (712)
145 KOG3975 Uncharacterized conser 99.2 2.1E-08 4.4E-13 73.3 19.4 219 43-267 27-300 (301)
146 PF01674 Lipase_2: Lipase (cla 99.2 1.3E-10 2.8E-15 85.7 7.9 100 46-147 2-105 (219)
147 PF12048 DUF3530: Protein of u 99.1 3.9E-08 8.5E-13 77.4 20.4 183 44-270 86-309 (310)
148 KOG3253 Predicted alpha/beta h 99.1 1.2E-09 2.6E-14 89.2 12.1 180 44-271 175-375 (784)
149 KOG1551 Uncharacterized conser 99.1 2.7E-09 5.9E-14 78.5 12.7 230 39-271 107-367 (371)
150 PF00151 Lipase: Lipase; Inte 99.1 3.1E-10 6.8E-15 89.6 8.2 109 44-152 70-188 (331)
151 PF10340 DUF2424: Protein of u 99.1 3E-09 6.5E-14 83.9 13.2 106 44-154 121-238 (374)
152 PLN02733 phosphatidylcholine-s 99.1 5.4E-10 1.2E-14 91.3 9.4 91 61-154 108-204 (440)
153 PRK10439 enterobactin/ferric e 99.1 9.9E-08 2.1E-12 78.1 21.2 119 32-151 191-323 (411)
154 PF11144 DUF2920: Protein of u 99.1 3.1E-08 6.7E-13 78.5 17.4 211 32-245 19-331 (403)
155 COG3319 Thioesterase domains o 99.0 1.4E-09 3.1E-14 82.1 8.3 100 46-152 1-104 (257)
156 KOG3847 Phospholipase A2 (plat 99.0 4.8E-09 1E-13 79.1 10.3 106 44-151 117-275 (399)
157 PF00756 Esterase: Putative es 99.0 1.5E-08 3.2E-13 78.2 12.4 49 106-154 101-153 (251)
158 PF11339 DUF3141: Protein of u 98.9 2.9E-07 6.3E-12 74.8 18.7 84 65-154 92-178 (581)
159 COG1770 PtrB Protease II [Amin 98.9 8.7E-08 1.9E-12 79.8 15.5 225 19-256 416-661 (682)
160 PF00450 Peptidase_S10: Serine 98.9 7.8E-08 1.7E-12 79.9 15.3 121 30-153 21-183 (415)
161 KOG4840 Predicted hydrolases o 98.9 1.5E-07 3.2E-12 67.7 13.6 108 44-154 35-147 (299)
162 COG3150 Predicted esterase [Ge 98.9 2E-07 4.4E-12 64.0 13.6 185 48-268 2-187 (191)
163 smart00824 PKS_TE Thioesterase 98.8 1.7E-07 3.7E-12 70.1 12.4 85 62-151 14-102 (212)
164 PF05990 DUF900: Alpha/beta hy 98.8 6.7E-08 1.4E-12 73.0 10.0 110 43-153 16-139 (233)
165 COG3946 VirJ Type IV secretory 98.8 1.8E-07 3.9E-12 73.4 11.8 180 44-269 259-448 (456)
166 PF05705 DUF829: Eukaryotic pr 98.8 5E-08 1.1E-12 74.6 8.7 209 47-267 1-240 (240)
167 PF05577 Peptidase_S28: Serine 98.7 2.1E-07 4.5E-12 77.6 12.6 110 44-153 28-150 (434)
168 cd00312 Esterase_lipase Estera 98.7 1.1E-07 2.5E-12 80.7 9.4 106 44-152 94-214 (493)
169 PF05057 DUF676: Putative seri 98.7 1.6E-07 3.4E-12 70.4 8.8 90 44-136 3-97 (217)
170 COG1073 Hydrolases of the alph 98.7 1.2E-06 2.7E-11 69.1 14.5 222 44-271 48-298 (299)
171 PLN02606 palmitoyl-protein thi 98.7 7.4E-06 1.6E-10 63.0 17.2 104 44-151 25-132 (306)
172 PLN02633 palmitoyl protein thi 98.6 8.8E-06 1.9E-10 62.6 17.4 105 43-151 23-131 (314)
173 PF00135 COesterase: Carboxyle 98.6 3.9E-07 8.4E-12 78.4 11.3 116 35-151 109-245 (535)
174 KOG3101 Esterase D [General fu 98.6 3.2E-07 6.9E-12 65.6 7.8 109 44-152 43-177 (283)
175 KOG2541 Palmitoyl protein thio 98.6 5.4E-06 1.2E-10 61.7 13.7 102 46-151 24-128 (296)
176 PLN02209 serine carboxypeptida 98.6 1.6E-05 3.6E-10 65.6 18.1 124 26-152 45-213 (437)
177 COG2272 PnbA Carboxylesterase 98.5 2.6E-07 5.7E-12 74.8 6.7 117 35-152 80-218 (491)
178 COG4782 Uncharacterized protei 98.5 1.4E-06 3E-11 67.9 10.0 110 43-153 114-236 (377)
179 COG1075 LipA Predicted acetylt 98.5 8.1E-07 1.8E-11 71.0 8.1 100 45-152 59-165 (336)
180 PF10142 PhoPQ_related: PhoPQ- 98.4 6.1E-06 1.3E-10 65.8 11.9 148 115-273 170-323 (367)
181 PLN03016 sinapoylglucose-malat 98.4 6.5E-05 1.4E-09 62.1 18.2 121 31-152 48-211 (433)
182 PF08386 Abhydrolase_4: TAP-li 98.4 1.3E-06 2.8E-11 56.9 6.8 59 211-269 34-93 (103)
183 KOG3724 Negative regulator of 98.3 4E-06 8.7E-11 71.4 9.4 104 44-152 88-221 (973)
184 COG0627 Predicted esterase [Ge 98.3 1.3E-05 2.8E-10 63.0 11.7 225 44-272 53-313 (316)
185 PF04301 DUF452: Protein of un 98.3 4.3E-06 9.3E-11 61.3 8.2 81 43-151 9-90 (213)
186 PF02450 LCAT: Lecithin:choles 98.3 4.3E-06 9.4E-11 68.4 8.9 83 62-152 66-161 (389)
187 PF02089 Palm_thioest: Palmito 98.3 5.7E-06 1.2E-10 63.0 8.5 107 43-151 3-116 (279)
188 COG2382 Fes Enterochelin ester 98.3 3.5E-05 7.5E-10 58.9 12.4 108 44-154 97-215 (299)
189 KOG2183 Prolylcarboxypeptidase 98.2 5.5E-06 1.2E-10 65.5 7.4 102 46-150 81-201 (492)
190 KOG1282 Serine carboxypeptidas 98.2 0.00037 8E-09 57.5 17.2 130 20-153 42-215 (454)
191 PF05576 Peptidase_S37: PS-10 98.2 0.0002 4.4E-09 57.2 15.0 105 43-151 61-169 (448)
192 KOG3967 Uncharacterized conser 98.0 0.00041 8.8E-09 50.1 11.8 105 44-150 100-226 (297)
193 PF07082 DUF1350: Protein of u 97.9 0.0003 6.6E-09 52.5 10.8 102 41-148 13-122 (250)
194 PLN02517 phosphatidylcholine-s 97.9 6.4E-05 1.4E-09 63.0 7.4 90 61-152 156-264 (642)
195 COG4553 DepA Poly-beta-hydroxy 97.8 0.0014 3E-08 50.0 13.4 105 44-154 102-212 (415)
196 KOG2182 Hydrolytic enzymes of 97.6 0.0011 2.5E-08 54.2 10.7 110 43-152 84-208 (514)
197 PF06259 Abhydrolase_8: Alpha/ 97.5 0.0076 1.6E-07 43.3 13.3 107 44-150 18-143 (177)
198 cd00741 Lipase Lipase. Lipase 97.5 0.00054 1.2E-08 48.4 6.8 53 99-151 9-67 (153)
199 PF04083 Abhydro_lipase: Parti 97.4 0.00038 8.2E-09 40.4 4.5 44 18-61 8-59 (63)
200 KOG1516 Carboxylesterase and r 97.4 0.00046 1E-08 59.7 7.0 103 45-151 112-232 (545)
201 COG4947 Uncharacterized protei 97.4 0.002 4.3E-08 45.0 8.4 55 100-154 83-139 (227)
202 PF01764 Lipase_3: Lipase (cla 97.2 0.0011 2.4E-08 46.0 6.1 37 102-138 48-85 (140)
203 PF11187 DUF2974: Protein of u 97.1 0.0017 3.8E-08 48.7 6.5 46 105-150 72-122 (224)
204 KOG2369 Lecithin:cholesterol a 97.1 0.0015 3.2E-08 53.3 6.2 85 61-150 124-224 (473)
205 KOG4388 Hormone-sensitive lipa 97.1 0.0053 1.1E-07 51.5 9.2 100 44-150 395-507 (880)
206 COG2819 Predicted hydrolase of 97.1 0.00096 2.1E-08 50.5 4.6 39 115-153 135-174 (264)
207 PF01083 Cutinase: Cutinase; 97.1 0.02 4.4E-07 41.5 11.2 103 47-151 7-122 (179)
208 COG4287 PqaA PhoPQ-activated p 97.0 0.004 8.7E-08 49.1 7.7 132 115-253 232-372 (507)
209 cd00519 Lipase_3 Lipase (class 97.0 0.0031 6.8E-08 47.9 7.2 39 99-137 109-148 (229)
210 PF11288 DUF3089: Protein of u 97.0 0.0024 5.1E-08 46.9 6.1 70 68-138 40-116 (207)
211 COG2939 Carboxypeptidase C (ca 97.0 0.0031 6.8E-08 52.0 6.9 103 44-149 100-234 (498)
212 PLN02454 triacylglycerol lipas 96.6 0.0075 1.6E-07 49.1 6.2 38 100-137 208-248 (414)
213 KOG2521 Uncharacterized conser 96.6 0.13 2.7E-06 41.3 12.8 224 43-274 36-294 (350)
214 TIGR03712 acc_sec_asp2 accesso 96.2 0.52 1.1E-05 39.4 14.6 113 31-150 274-389 (511)
215 PF06850 PHB_depo_C: PHB de-po 96.0 0.014 3E-07 42.1 4.5 59 211-269 134-201 (202)
216 PLN02310 triacylglycerol lipas 96.0 0.015 3.2E-07 47.4 5.0 37 101-137 192-229 (405)
217 PLN00413 triacylglycerol lipas 95.9 0.016 3.5E-07 47.9 5.1 22 115-136 282-303 (479)
218 KOG4372 Predicted alpha/beta h 95.8 0.013 2.7E-07 47.2 3.9 86 44-136 79-169 (405)
219 PLN02571 triacylglycerol lipas 95.8 0.028 6E-07 46.0 5.9 20 118-137 227-246 (413)
220 PLN03037 lipase class 3 family 95.8 0.018 4E-07 48.1 4.9 37 101-137 301-338 (525)
221 PLN02162 triacylglycerol lipas 95.8 0.019 4.2E-07 47.3 5.0 22 115-136 276-297 (475)
222 PF07519 Tannase: Tannase and 95.8 0.11 2.3E-06 44.1 9.4 61 211-271 353-428 (474)
223 PLN02934 triacylglycerol lipas 95.6 0.024 5.1E-07 47.4 4.8 33 104-136 307-340 (515)
224 KOG1283 Serine carboxypeptidas 95.5 0.2 4.2E-06 39.3 9.1 119 31-151 12-166 (414)
225 PLN02408 phospholipase A1 95.5 0.034 7.3E-07 44.8 5.2 21 118-138 201-221 (365)
226 PLN02324 triacylglycerol lipas 95.4 0.049 1.1E-06 44.5 5.9 20 118-137 216-235 (415)
227 PLN02213 sinapoylglucose-malat 95.2 0.15 3.3E-06 40.9 8.4 79 75-153 2-98 (319)
228 PLN02719 triacylglycerol lipas 95.2 0.06 1.3E-06 45.1 5.9 20 118-137 299-318 (518)
229 KOG1202 Animal-type fatty acid 95.0 0.045 9.7E-07 50.3 5.0 95 43-152 2121-2220(2376)
230 PLN02753 triacylglycerol lipas 95.0 0.074 1.6E-06 44.7 6.0 21 117-137 312-332 (531)
231 PF08237 PE-PPE: PE-PPE domain 94.8 0.22 4.8E-06 37.6 7.7 64 74-138 2-69 (225)
232 PLN02847 triacylglycerol lipas 94.7 0.24 5.3E-06 42.4 8.4 21 117-137 251-271 (633)
233 PLN02761 lipase class 3 family 94.7 0.059 1.3E-06 45.2 4.7 19 118-136 295-313 (527)
234 PLN02802 triacylglycerol lipas 94.6 0.073 1.6E-06 44.6 5.1 21 118-138 331-351 (509)
235 PF05277 DUF726: Protein of un 94.5 0.074 1.6E-06 42.7 4.7 40 115-154 218-263 (345)
236 KOG4569 Predicted lipase [Lipi 93.9 0.11 2.5E-06 41.8 4.8 34 101-137 158-191 (336)
237 COG2830 Uncharacterized protei 93.6 0.22 4.8E-06 34.7 5.0 77 45-149 11-88 (214)
238 PF07519 Tannase: Tannase and 93.3 0.15 3.2E-06 43.3 4.6 79 72-152 57-151 (474)
239 PLN02213 sinapoylglucose-malat 93.2 0.36 7.7E-06 38.8 6.5 59 211-269 233-316 (319)
240 PF06441 EHN: Epoxide hydrolas 92.9 0.26 5.6E-06 32.5 4.3 28 31-58 76-105 (112)
241 PF09994 DUF2235: Uncharacteri 92.8 1.6 3.4E-05 34.4 9.4 94 45-138 1-113 (277)
242 COG5153 CVT17 Putative lipase 92.0 0.27 5.9E-06 37.8 4.1 34 115-149 274-307 (425)
243 KOG4540 Putative lipase essent 92.0 0.27 5.9E-06 37.8 4.1 34 115-149 274-307 (425)
244 PF06309 Torsin: Torsin; Inte 90.7 1.8 3.9E-05 29.2 6.5 34 42-75 49-82 (127)
245 PF03283 PAE: Pectinacetyleste 90.3 1.2 2.5E-05 36.5 6.5 36 101-136 137-175 (361)
246 KOG4389 Acetylcholinesterase/B 90.3 0.79 1.7E-05 38.4 5.4 114 35-153 121-257 (601)
247 PF06792 UPF0261: Uncharacteri 89.9 6.8 0.00015 32.4 10.3 97 47-145 3-124 (403)
248 COG0529 CysC Adenylylsulfate k 89.8 4.7 0.0001 29.1 8.1 40 43-82 20-59 (197)
249 KOG2029 Uncharacterized conser 89.7 0.94 2E-05 38.8 5.5 51 100-150 506-571 (697)
250 PF09949 DUF2183: Uncharacteri 89.1 4.4 9.5E-05 26.2 7.9 82 62-146 12-97 (100)
251 COG3673 Uncharacterized conser 88.5 11 0.00024 30.0 10.1 93 44-137 30-142 (423)
252 PRK02399 hypothetical protein; 88.2 10 0.00023 31.3 10.3 96 49-145 6-126 (406)
253 COG4822 CbiK Cobalamin biosynt 88.2 2.7 5.8E-05 31.1 6.2 62 44-122 137-199 (265)
254 PF01583 APS_kinase: Adenylyls 85.0 5.3 0.00012 28.2 6.4 39 45-83 1-39 (156)
255 PF10081 Abhydrolase_9: Alpha/ 84.3 8.9 0.00019 30.0 7.6 38 115-152 107-148 (289)
256 cd07198 Patatin Patatin-like p 84.0 1.9 4E-05 31.1 3.9 34 106-139 15-48 (172)
257 PF12242 Eno-Rase_NADH_b: NAD( 83.4 4.1 8.9E-05 24.6 4.4 40 99-138 18-61 (78)
258 KOG2385 Uncharacterized conser 83.0 4.1 8.9E-05 34.5 5.8 42 115-156 445-492 (633)
259 cd07225 Pat_PNPLA6_PNPLA7 Pata 82.1 2.2 4.9E-05 34.0 4.0 33 106-138 32-64 (306)
260 cd07207 Pat_ExoU_VipD_like Exo 81.9 2.5 5.4E-05 31.1 4.0 33 106-138 16-48 (194)
261 PRK10279 hypothetical protein; 81.8 2.2 4.8E-05 33.9 3.9 33 106-138 22-54 (300)
262 cd03818 GT1_ExpC_like This fam 81.3 25 0.00054 29.2 10.1 36 48-87 2-37 (396)
263 cd07210 Pat_hypo_W_succinogene 80.9 3.1 6.8E-05 31.4 4.3 33 106-138 17-49 (221)
264 COG3340 PepE Peptidase E [Amin 79.9 6 0.00013 29.4 5.1 41 43-83 30-71 (224)
265 cd07227 Pat_Fungal_NTE1 Fungal 78.8 3.3 7.2E-05 32.3 3.9 33 106-138 27-59 (269)
266 PF00448 SRP54: SRP54-type pro 78.8 20 0.00044 26.5 7.8 70 66-146 75-147 (196)
267 cd07228 Pat_NTE_like_bacteria 78.2 4.9 0.00011 29.0 4.4 33 107-139 18-50 (175)
268 PF00698 Acyl_transf_1: Acyl t 78.2 2 4.3E-05 34.6 2.6 31 106-136 73-103 (318)
269 smart00827 PKS_AT Acyl transfe 77.8 3.6 7.8E-05 32.6 4.0 31 106-136 71-101 (298)
270 COG1752 RssA Predicted esteras 77.1 3.8 8.2E-05 32.8 3.9 33 106-138 28-60 (306)
271 cd07205 Pat_PNPLA6_PNPLA7_NTE1 76.9 5.6 0.00012 28.7 4.4 34 105-138 16-49 (175)
272 TIGR03131 malonate_mdcH malona 76.3 4.3 9.3E-05 32.2 4.0 31 107-137 66-96 (295)
273 cd07209 Pat_hypo_Ecoli_Z1214_l 76.2 4.4 9.5E-05 30.5 3.8 33 107-139 16-48 (215)
274 cd01714 ETF_beta The electron 76.0 30 0.00065 25.8 8.4 71 66-147 68-145 (202)
275 PRK12467 peptide synthase; Pro 75.8 12 0.00027 41.3 8.1 96 45-147 3692-3791(3956)
276 PRK05282 (alpha)-aspartyl dipe 74.8 17 0.00036 27.8 6.5 40 44-83 30-70 (233)
277 COG3007 Uncharacterized paraqu 74.6 22 0.00047 28.1 7.0 68 102-169 22-97 (398)
278 cd07224 Pat_like Patatin-like 73.4 6 0.00013 30.2 4.0 34 106-139 16-51 (233)
279 COG3494 Uncharacterized protei 72.6 18 0.00039 27.8 6.1 59 64-124 18-77 (279)
280 TIGR00128 fabD malonyl CoA-acy 72.4 5.5 0.00012 31.4 3.8 29 109-137 74-103 (290)
281 cd07230 Pat_TGL4-5_like Triacy 72.2 4.2 9E-05 34.2 3.1 36 105-140 89-124 (421)
282 PF05673 DUF815: Protein of un 71.8 19 0.00041 27.7 6.1 59 47-122 53-111 (249)
283 PF00326 Peptidase_S9: Prolyl 71.3 28 0.00061 25.9 7.2 44 44-87 143-187 (213)
284 PF08484 Methyltransf_14: C-me 70.6 23 0.00049 25.3 6.1 48 101-149 54-102 (160)
285 TIGR03709 PPK2_rel_1 polyphosp 69.6 4.6 9.9E-05 31.4 2.6 41 43-83 53-93 (264)
286 COG0541 Ffh Signal recognition 69.2 44 0.00095 28.2 8.0 69 68-147 176-247 (451)
287 cd07208 Pat_hypo_Ecoli_yjju_li 68.9 8.5 0.00018 30.0 4.1 34 106-139 15-49 (266)
288 TIGR03707 PPK2_P_aer polyphosp 68.6 4.9 0.00011 30.5 2.5 40 44-83 29-68 (230)
289 TIGR01425 SRP54_euk signal rec 67.5 36 0.00078 28.8 7.4 68 69-147 177-247 (429)
290 COG1073 Hydrolases of the alph 67.5 0.44 9.6E-06 37.4 -3.4 93 44-137 87-180 (299)
291 COG1087 GalE UDP-glucose 4-epi 67.3 46 0.001 26.6 7.4 87 64-150 14-119 (329)
292 PF10686 DUF2493: Protein of u 67.0 16 0.00034 21.9 4.0 33 44-80 30-63 (71)
293 cd07232 Pat_PLPL Patain-like p 66.9 6 0.00013 33.1 2.9 36 105-140 83-118 (407)
294 cd07229 Pat_TGL3_like Triacylg 66.8 7.1 0.00015 32.3 3.3 35 106-140 100-134 (391)
295 KOG2170 ATPase of the AAA+ sup 65.4 23 0.00051 28.2 5.6 32 43-74 107-138 (344)
296 cd07204 Pat_PNPLA_like Patatin 65.4 12 0.00026 28.8 4.2 33 107-139 17-53 (243)
297 PF03205 MobB: Molybdopterin g 65.1 15 0.00032 25.5 4.2 43 47-89 1-43 (140)
298 PRK14974 cell division protein 64.9 69 0.0015 26.2 8.4 65 72-147 220-287 (336)
299 PF01656 CbiA: CobQ/CobB/MinD/ 64.6 8.5 0.00019 28.1 3.2 36 48-83 1-36 (195)
300 cd07231 Pat_SDP1-like Sugar-De 64.3 7.8 0.00017 31.0 2.9 33 106-138 85-117 (323)
301 KOG1532 GTPase XAB1, interacts 64.2 71 0.0015 25.3 11.7 39 44-82 17-55 (366)
302 KOG1252 Cystathionine beta-syn 62.5 70 0.0015 26.0 7.7 38 44-84 210-249 (362)
303 PF12000 Glyco_trans_4_3: Gkyc 61.9 38 0.00082 24.5 5.8 74 73-147 19-95 (171)
304 cd01819 Patatin_and_cPLA2 Pata 61.9 14 0.0003 26.1 3.7 29 107-135 16-46 (155)
305 PF03976 PPK2: Polyphosphate k 61.4 2.8 6.1E-05 31.8 0.1 40 44-83 29-68 (228)
306 cd07220 Pat_PNPLA2 Patatin-lik 61.2 14 0.00031 28.5 3.9 33 107-139 22-58 (249)
307 PRK07933 thymidylate kinase; V 61.1 16 0.00035 27.4 4.1 41 48-88 2-42 (213)
308 cd07206 Pat_TGL3-4-5_SDP1 Tria 61.0 14 0.0003 29.4 3.7 34 106-139 86-119 (298)
309 COG0218 Predicted GTPase [Gene 60.6 28 0.0006 25.8 5.0 56 211-269 135-198 (200)
310 COG4088 Predicted nucleotide k 60.0 43 0.00093 25.2 5.8 36 47-82 2-37 (261)
311 cd07218 Pat_iPLA2 Calcium-inde 58.4 17 0.00036 28.1 3.8 20 120-139 33-52 (245)
312 PRK12724 flagellar biosynthesi 58.4 1.2E+02 0.0025 25.9 9.4 74 66-147 291-367 (432)
313 PRK00652 lpxK tetraacyldisacch 58.1 93 0.002 25.3 8.0 42 47-89 50-93 (325)
314 COG1856 Uncharacterized homolo 58.0 53 0.0011 24.9 6.0 71 66-138 102-178 (275)
315 TIGR02069 cyanophycinase cyano 57.8 56 0.0012 25.4 6.6 40 43-83 26-66 (250)
316 cd07221 Pat_PNPLA3 Patatin-lik 57.7 18 0.00039 28.0 3.9 21 119-139 34-54 (252)
317 PF11713 Peptidase_C80: Peptid 57.5 14 0.0003 26.2 3.0 52 78-129 57-116 (157)
318 PF10605 3HBOH: 3HB-oligomer h 57.2 11 0.00023 33.0 2.8 35 118-152 286-322 (690)
319 TIGR00959 ffh signal recogniti 56.2 1.3E+02 0.0028 25.7 8.9 68 69-147 177-247 (428)
320 PLN02840 tRNA dimethylallyltra 55.9 1.2E+02 0.0027 25.7 8.5 76 44-124 19-118 (421)
321 PF08433 KTI12: Chromatin asso 55.7 48 0.001 26.1 6.0 40 47-86 2-41 (270)
322 cd01983 Fer4_NifH The Fer4_Nif 55.6 16 0.00035 22.6 3.0 33 49-81 2-34 (99)
323 PRK06731 flhF flagellar biosyn 54.7 1E+02 0.0023 24.2 9.9 63 74-147 154-219 (270)
324 cd07222 Pat_PNPLA4 Patatin-lik 54.0 20 0.00043 27.7 3.6 31 106-136 16-50 (246)
325 cd03409 Chelatase_Class_II Cla 54.0 46 0.001 21.1 4.9 27 47-73 2-29 (101)
326 COG1506 DAP2 Dipeptidyl aminop 53.8 67 0.0014 28.9 7.3 65 44-113 550-615 (620)
327 COG0331 FabD (acyl-carrier-pro 53.5 17 0.00038 29.1 3.3 22 115-136 83-104 (310)
328 cd03413 CbiK_C Anaerobic cobal 53.3 58 0.0013 21.1 5.2 28 46-74 2-29 (103)
329 PRK00889 adenylylsulfate kinas 53.1 25 0.00055 25.2 3.9 38 45-82 3-40 (175)
330 PRK10867 signal recognition pa 52.8 1.5E+02 0.0032 25.4 9.5 67 69-146 178-247 (433)
331 PLN02748 tRNA dimethylallyltra 52.8 1.1E+02 0.0025 26.3 8.0 77 44-125 20-120 (468)
332 COG1763 MobB Molybdopterin-gua 52.7 30 0.00065 24.7 4.0 41 46-86 2-42 (161)
333 PF13207 AAA_17: AAA domain; P 52.5 26 0.00056 23.1 3.7 31 48-82 1-32 (121)
334 PRK14729 miaA tRNA delta(2)-is 52.0 1.2E+02 0.0027 24.3 8.8 74 47-125 5-101 (300)
335 KOG0781 Signal recognition par 51.3 88 0.0019 26.9 6.9 85 50-146 443-537 (587)
336 COG0031 CysK Cysteine synthase 50.4 1.3E+02 0.0028 24.1 8.7 83 63-148 183-290 (300)
337 TIGR02764 spore_ybaN_pdaB poly 50.3 11 0.00023 27.7 1.6 36 46-81 152-188 (191)
338 PRK06696 uridine kinase; Valid 50.2 30 0.00066 26.1 4.1 39 43-81 19-57 (223)
339 TIGR02873 spore_ylxY probable 50.0 14 0.00029 29.0 2.2 34 46-81 231-264 (268)
340 TIGR02884 spore_pdaA delta-lac 50.0 18 0.00039 27.4 2.8 36 45-81 186-221 (224)
341 COG0084 TatD Mg-dependent DNas 49.9 60 0.0013 25.3 5.6 53 99-151 14-67 (256)
342 cd04951 GT1_WbdM_like This fam 49.2 1.4E+02 0.003 24.0 9.5 38 47-84 2-39 (360)
343 COG1709 Predicted transcriptio 48.8 69 0.0015 24.1 5.4 36 43-82 192-228 (241)
344 PF05724 TPMT: Thiopurine S-me 48.7 18 0.0004 27.3 2.6 33 44-83 36-68 (218)
345 PRK00091 miaA tRNA delta(2)-is 48.4 1.3E+02 0.0029 24.2 7.5 73 45-121 3-99 (307)
346 TIGR02026 BchE magnesium-proto 48.3 1.9E+02 0.004 25.3 9.0 85 64-148 26-123 (497)
347 cd07212 Pat_PNPLA9 Patatin-lik 48.3 17 0.00036 29.3 2.5 19 120-138 35-53 (312)
348 cd03146 GAT1_Peptidase_E Type 48.3 87 0.0019 23.5 6.2 40 43-83 29-69 (212)
349 TIGR00064 ftsY signal recognit 48.0 1.4E+02 0.003 23.6 8.2 69 71-147 151-225 (272)
350 CHL00175 minD septum-site dete 47.9 33 0.00071 27.0 4.1 40 44-83 14-53 (281)
351 COG1255 Uncharacterized protei 47.8 24 0.00052 23.4 2.7 22 62-83 24-45 (129)
352 TIGR00176 mobB molybdopterin-g 47.3 26 0.00056 24.8 3.1 38 49-86 2-39 (155)
353 KOG0780 Signal recognition par 47.2 1.5E+02 0.0032 24.9 7.4 69 68-147 177-248 (483)
354 PRK03846 adenylylsulfate kinas 46.5 35 0.00076 25.2 3.8 38 44-81 22-59 (198)
355 cd02037 MRP-like MRP (Multiple 46.4 35 0.00076 24.3 3.8 37 48-84 2-38 (169)
356 cd01521 RHOD_PspE2 Member of t 46.4 66 0.0014 20.9 4.8 34 43-80 63-96 (110)
357 PTZ00445 p36-lilke protein; Pr 46.3 95 0.0021 23.4 5.8 64 63-127 31-102 (219)
358 TIGR03371 cellulose_yhjQ cellu 46.2 29 0.00064 26.5 3.6 40 47-86 3-42 (246)
359 CHL00200 trpA tryptophan synth 46.0 1.2E+02 0.0026 23.8 6.7 58 63-137 108-166 (263)
360 PF01118 Semialdhyde_dh: Semia 46.0 35 0.00076 22.8 3.5 32 118-149 1-33 (121)
361 PLN02733 phosphatidylcholine-s 45.4 17 0.00036 30.9 2.2 51 216-269 371-421 (440)
362 cd02036 MinD Bacterial cell di 45.3 30 0.00065 24.7 3.3 36 48-83 2-37 (179)
363 cd07211 Pat_PNPLA8 Patatin-lik 45.1 28 0.00061 27.9 3.4 17 120-136 44-60 (308)
364 PRK13230 nitrogenase reductase 45.0 36 0.00079 26.7 4.0 42 47-89 3-44 (279)
365 PLN02924 thymidylate kinase 45.0 40 0.00087 25.5 4.0 41 44-84 14-54 (220)
366 PF14253 AbiH: Bacteriophage a 45.0 14 0.0003 28.9 1.6 16 115-130 233-248 (270)
367 COG0159 TrpA Tryptophan syntha 44.8 98 0.0021 24.3 6.0 59 63-138 111-170 (265)
368 TIGR02816 pfaB_fam PfaB family 44.8 32 0.00069 30.1 3.7 25 114-138 262-286 (538)
369 PRK09273 hypothetical protein; 44.5 1.3E+02 0.0029 22.6 9.1 78 62-149 18-95 (211)
370 cd02034 CooC The accessory pro 44.5 34 0.00074 22.8 3.2 34 49-82 2-35 (116)
371 KOG0635 Adenosine 5'-phosphosu 43.8 60 0.0013 23.0 4.2 39 44-82 29-67 (207)
372 PF01734 Patatin: Patatin-like 43.6 26 0.00056 25.3 2.8 21 118-138 28-48 (204)
373 cd07213 Pat17_PNPLA8_PNPLA9_li 43.3 49 0.0011 26.3 4.4 19 120-138 37-55 (288)
374 PF02230 Abhydrolase_2: Phosph 43.2 1.1E+02 0.0024 22.9 6.2 44 45-88 155-199 (216)
375 TIGR00455 apsK adenylylsulfate 43.1 1.3E+02 0.0027 21.8 7.2 38 44-81 16-53 (184)
376 PF13191 AAA_16: AAA ATPase do 43.0 48 0.001 23.8 4.1 42 44-85 22-63 (185)
377 PF00004 AAA: ATPase family as 42.8 98 0.0021 20.5 7.2 54 49-113 1-55 (132)
378 PRK13256 thiopurine S-methyltr 42.4 20 0.00043 27.3 2.0 29 48-83 46-74 (226)
379 cd02033 BchX Chlorophyllide re 42.4 44 0.00095 27.2 4.0 40 44-83 29-68 (329)
380 KOG1200 Mitochondrial/plastidi 42.2 1.5E+02 0.0032 22.3 7.0 32 48-83 16-47 (256)
381 cd07219 Pat_PNPLA1 Patatin-lik 41.9 42 0.00091 27.8 3.8 18 120-137 47-64 (382)
382 PRK13973 thymidylate kinase; P 41.6 48 0.0011 24.8 4.0 39 46-84 3-41 (213)
383 COG3727 Vsr DNA G:T-mismatch r 41.5 65 0.0014 22.0 4.0 37 44-80 56-114 (150)
384 COG0505 CarA Carbamoylphosphat 41.5 73 0.0016 26.1 5.0 64 64-134 191-266 (368)
385 PRK10751 molybdopterin-guanine 41.4 47 0.001 24.1 3.7 43 45-87 5-47 (173)
386 TIGR03708 poly_P_AMP_trns poly 41.4 29 0.00063 29.9 3.0 42 43-84 37-78 (493)
387 COG1576 Uncharacterized conser 41.1 1E+02 0.0022 21.9 5.0 49 74-134 67-115 (155)
388 cd03416 CbiX_SirB_N Sirohydroc 41.0 50 0.0011 21.1 3.5 27 47-73 2-28 (101)
389 PF04084 ORC2: Origin recognit 40.9 1.6E+02 0.0035 24.0 7.0 47 102-148 121-176 (326)
390 COG0552 FtsY Signal recognitio 40.8 2E+02 0.0044 23.5 8.8 72 68-147 215-292 (340)
391 PRK14340 (dimethylallyl)adenos 40.7 2.3E+02 0.0049 24.4 8.1 93 49-145 9-106 (445)
392 PF06500 DUF1100: Alpha/beta h 40.6 64 0.0014 27.1 4.7 59 211-270 189-255 (411)
393 cd03785 GT1_MurG MurG is an N- 40.6 2E+02 0.0042 23.3 9.0 33 49-81 2-34 (350)
394 TIGR00089 RNA modification enz 40.4 2.3E+02 0.005 24.1 8.4 93 49-145 2-97 (429)
395 TIGR03127 RuMP_HxlB 6-phospho 40.3 94 0.002 22.4 5.3 32 48-81 32-63 (179)
396 PF09664 DUF2399: Protein of u 40.3 23 0.0005 25.0 1.9 31 44-78 40-70 (152)
397 COG3887 Predicted signaling pr 40.1 1.1E+02 0.0024 27.1 6.1 50 99-149 321-376 (655)
398 PF03610 EIIA-man: PTS system 40.0 1.1E+02 0.0024 20.2 7.3 77 47-138 2-79 (116)
399 KOG2214 Predicted esterase of 39.9 12 0.00027 31.7 0.6 40 106-145 191-231 (543)
400 PLN03019 carbonic anhydrase 39.9 61 0.0013 26.2 4.3 30 102-134 203-232 (330)
401 TIGR01969 minD_arch cell divis 39.7 45 0.00098 25.5 3.7 38 47-84 2-39 (251)
402 TIGR01007 eps_fam capsular exo 39.6 52 0.0011 24.3 3.9 39 45-83 17-55 (204)
403 PRK09936 hypothetical protein; 39.5 1.1E+02 0.0024 24.4 5.5 28 62-89 39-66 (296)
404 KOG1202 Animal-type fatty acid 39.3 25 0.00054 33.9 2.4 24 106-129 571-594 (2376)
405 COG2236 Predicted phosphoribos 39.1 1E+02 0.0022 22.8 5.1 52 95-146 7-58 (192)
406 PRK14337 (dimethylallyl)adenos 38.9 2.5E+02 0.0055 24.1 8.2 94 49-147 6-104 (446)
407 TIGR01287 nifH nitrogenase iro 38.8 50 0.0011 25.9 3.9 37 52-88 6-42 (275)
408 TIGR01968 minD_bact septum sit 38.8 49 0.0011 25.5 3.8 38 47-84 3-40 (261)
409 PF02502 LacAB_rpiB: Ribose/Ga 38.7 1.3E+02 0.0029 20.9 8.7 73 64-149 15-88 (140)
410 PF10566 Glyco_hydro_97: Glyco 38.7 1.3E+02 0.0029 23.7 5.9 64 63-127 34-97 (273)
411 PHA02518 ParA-like protein; Pr 38.5 52 0.0011 24.3 3.8 40 47-86 2-41 (211)
412 KOG2872 Uroporphyrinogen decar 38.5 31 0.00066 27.2 2.4 30 45-83 252-281 (359)
413 COG0489 Mrp ATPases involved i 38.4 72 0.0016 25.0 4.6 46 44-89 56-101 (265)
414 PLN02591 tryptophan synthase 37.8 1.9E+02 0.0042 22.5 8.8 61 63-140 95-156 (250)
415 PRK01906 tetraacyldisaccharide 37.8 2.3E+02 0.005 23.3 7.6 42 47-89 57-100 (338)
416 PRK07667 uridine kinase; Provi 37.6 62 0.0013 23.8 4.0 42 44-85 15-56 (193)
417 KOG1209 1-Acyl dihydroxyaceton 37.5 68 0.0015 24.3 3.9 37 44-83 5-41 (289)
418 COG1448 TyrB Aspartate/tyrosin 37.0 2.5E+02 0.0054 23.5 8.0 88 44-149 170-263 (396)
419 PLN02204 diacylglycerol kinase 36.9 2.3E+02 0.0051 25.4 7.6 34 44-77 159-193 (601)
420 PRK00726 murG undecaprenyldiph 36.9 2.3E+02 0.005 23.1 8.9 34 48-83 5-38 (357)
421 PLN03014 carbonic anhydrase 36.5 78 0.0017 25.8 4.5 30 102-134 208-237 (347)
422 PRK08939 primosomal protein Dn 36.5 34 0.00074 27.4 2.6 37 47-83 157-193 (306)
423 cd05312 NAD_bind_1_malic_enz N 36.3 51 0.0011 26.0 3.4 80 49-134 28-123 (279)
424 PF01580 FtsK_SpoIIIE: FtsK/Sp 36.3 84 0.0018 23.2 4.6 38 49-86 41-82 (205)
425 PRK10425 DNase TatD; Provision 36.2 1.5E+02 0.0033 23.1 6.0 51 101-151 14-65 (258)
426 cd03414 CbiX_SirB_C Sirohydroc 36.2 83 0.0018 20.7 4.1 27 47-73 3-29 (117)
427 PF03853 YjeF_N: YjeF-related 36.1 34 0.00073 24.6 2.3 36 43-80 23-58 (169)
428 TIGR01281 DPOR_bchL light-inde 36.1 50 0.0011 25.7 3.5 35 53-87 7-41 (268)
429 cd02040 NifH NifH gene encodes 36.0 59 0.0013 25.3 3.9 41 47-88 3-43 (270)
430 TIGR03018 pepcterm_TyrKin exop 36.0 75 0.0016 23.6 4.3 40 44-83 34-74 (207)
431 TIGR02016 BchX chlorophyllide 36.0 52 0.0011 26.3 3.5 36 48-84 3-38 (296)
432 PF02633 Creatininase: Creatin 35.9 2E+02 0.0043 22.0 7.3 74 63-137 42-121 (237)
433 cd02032 Bchl_like This family 35.7 48 0.001 25.8 3.3 34 53-86 7-40 (267)
434 cd02042 ParA ParA and ParB of 35.7 60 0.0013 20.7 3.3 35 49-83 3-37 (104)
435 PF01935 DUF87: Domain of unkn 35.5 50 0.0011 25.0 3.3 34 51-84 28-62 (229)
436 PRK00923 sirohydrochlorin coba 35.3 1.4E+02 0.003 20.0 6.0 28 46-73 3-30 (126)
437 PRK14325 (dimethylallyl)adenos 35.2 2.9E+02 0.0062 23.7 8.0 93 49-145 6-103 (444)
438 PF03721 UDPG_MGDP_dh_N: UDP-g 35.2 54 0.0012 24.0 3.3 29 50-83 4-32 (185)
439 COG0300 DltE Short-chain dehyd 35.1 2.2E+02 0.0049 22.4 6.9 32 48-83 8-39 (265)
440 COG3946 VirJ Type IV secretory 35.1 94 0.002 26.1 4.7 103 44-149 47-155 (456)
441 PRK13768 GTPase; Provisional 35.0 48 0.001 25.7 3.2 35 48-82 4-38 (253)
442 PF06414 Zeta_toxin: Zeta toxi 34.6 36 0.00077 25.2 2.3 41 42-82 11-51 (199)
443 PRK00131 aroK shikimate kinase 34.5 71 0.0015 22.6 3.9 34 45-82 3-37 (175)
444 cd02117 NifH_like This family 34.4 71 0.0015 23.8 3.9 36 53-88 7-42 (212)
445 PRK13236 nitrogenase reductase 34.2 69 0.0015 25.6 4.0 42 48-89 8-49 (296)
446 TIGR00689 rpiB_lacA_lacB sugar 33.9 1.7E+02 0.0036 20.6 8.5 73 64-149 14-87 (144)
447 PRK13235 nifH nitrogenase redu 33.8 56 0.0012 25.6 3.4 39 48-87 4-42 (274)
448 PRK10812 putative DNAse; Provi 33.7 1.5E+02 0.0033 23.2 5.7 51 101-151 19-70 (265)
449 cd08162 MPP_PhoA_N Synechococc 33.5 1.4E+02 0.003 24.2 5.6 43 104-146 196-238 (313)
450 PRK10964 ADP-heptose:LPS hepto 33.3 99 0.0021 24.9 4.8 36 44-79 177-215 (322)
451 KOG4022 Dihydropteridine reduc 33.2 1.9E+02 0.004 20.9 6.7 25 64-88 17-41 (236)
452 PRK13111 trpA tryptophan synth 33.0 2.4E+02 0.0052 22.1 9.6 61 63-140 106-167 (258)
453 COG1225 Bcp Peroxiredoxin [Pos 32.9 1.8E+02 0.004 20.7 6.3 60 20-81 8-71 (157)
454 PRK07952 DNA replication prote 32.8 44 0.00096 25.8 2.6 36 47-82 100-135 (244)
455 TIGR03249 KdgD 5-dehydro-4-deo 32.7 2.6E+02 0.0056 22.3 14.6 82 63-152 28-111 (296)
456 PF05577 Peptidase_S28: Serine 32.7 52 0.0011 27.9 3.3 39 211-252 376-414 (434)
457 TIGR00365 monothiol glutaredox 32.6 1.4E+02 0.0029 19.1 7.4 81 44-140 11-92 (97)
458 PTZ00062 glutaredoxin; Provisi 32.5 2.2E+02 0.0047 21.4 7.4 83 44-142 112-195 (204)
459 PF02606 LpxK: Tetraacyldisacc 32.5 70 0.0015 26.0 3.8 44 47-91 36-81 (326)
460 PF14606 Lipase_GDSL_3: GDSL-l 32.5 2E+02 0.0043 21.0 6.0 16 99-114 75-90 (178)
461 PLN00416 carbonate dehydratase 32.2 1.2E+02 0.0026 23.7 4.8 31 102-135 128-158 (258)
462 COG1058 CinA Predicted nucleot 32.1 1.5E+02 0.0033 23.1 5.2 60 50-128 13-72 (255)
463 PRK10824 glutaredoxin-4; Provi 32.1 1.6E+02 0.0034 19.7 7.9 81 44-140 14-95 (115)
464 cd07217 Pat17_PNPLA8_PNPLA9_li 32.1 44 0.00096 27.4 2.6 18 120-137 44-61 (344)
465 cd02038 FleN-like FleN is a me 32.0 95 0.002 21.3 4.0 38 48-85 2-39 (139)
466 PRK04148 hypothetical protein; 31.9 1.7E+02 0.0038 20.2 5.1 24 115-138 16-39 (134)
467 PRK05541 adenylylsulfate kinas 31.9 68 0.0015 23.0 3.4 38 44-81 5-42 (176)
468 cd00952 CHBPH_aldolase Trans-o 31.7 2.8E+02 0.006 22.4 8.8 82 63-152 31-115 (309)
469 PLN02251 pyrophosphate-depende 31.6 2.9E+02 0.0064 24.6 7.4 91 47-140 193-293 (568)
470 cd02027 APSK Adenosine 5'-phos 31.5 55 0.0012 22.8 2.8 34 48-81 1-34 (149)
471 TIGR02193 heptsyl_trn_I lipopo 31.4 1.1E+02 0.0023 24.6 4.8 37 44-80 178-217 (319)
472 TIGR00824 EIIA-man PTS system, 31.3 1.6E+02 0.0035 19.5 7.2 82 46-142 3-87 (116)
473 TIGR03029 EpsG chain length de 31.3 91 0.002 24.4 4.2 40 44-83 102-141 (274)
474 cd01523 RHOD_Lact_B Member of 31.3 1.1E+02 0.0023 19.4 3.9 29 43-77 60-88 (100)
475 PF09419 PGP_phosphatase: Mito 31.2 1.4E+02 0.0031 21.6 4.7 52 70-127 36-88 (168)
476 PLN02757 sirohydrochlorine fer 31.2 98 0.0021 21.9 3.9 30 44-73 13-42 (154)
477 PF02590 SPOUT_MTase: Predicte 31.1 1.1E+02 0.0024 21.7 4.1 45 74-130 67-112 (155)
478 PHA02114 hypothetical protein 31.0 99 0.0022 19.8 3.4 34 46-81 83-116 (127)
479 PRK13869 plasmid-partitioning 31.0 80 0.0017 26.6 4.0 41 46-86 122-162 (405)
480 PHA02519 plasmid partition pro 31.0 99 0.0022 25.9 4.5 42 47-88 108-150 (387)
481 PRK14331 (dimethylallyl)adenos 30.9 3.4E+02 0.0074 23.2 8.2 93 49-145 3-100 (437)
482 TIGR01425 SRP54_euk signal rec 30.8 76 0.0016 27.0 3.8 39 44-82 98-136 (429)
483 TIGR03708 poly_P_AMP_trns poly 30.7 47 0.001 28.7 2.6 41 43-83 296-336 (493)
484 PRK13705 plasmid-partitioning 30.7 85 0.0018 26.3 4.1 43 46-88 107-150 (388)
485 cd01520 RHOD_YbbB Member of th 30.7 1.2E+02 0.0026 20.4 4.2 34 43-81 85-118 (128)
486 PLN03050 pyridoxine (pyridoxam 30.4 1.1E+02 0.0024 23.7 4.4 34 46-81 61-94 (246)
487 COG3933 Transcriptional antite 30.3 3.3E+02 0.0072 23.3 7.1 74 44-133 108-181 (470)
488 COG5441 Uncharacterized conser 30.3 2.9E+02 0.0063 22.2 8.7 93 47-140 3-116 (401)
489 PRK03482 phosphoglycerate muta 30.2 2.3E+02 0.0051 21.1 6.1 39 95-135 120-159 (215)
490 PF01872 RibD_C: RibD C-termin 30.1 1.6E+02 0.0036 21.6 5.2 40 103-146 122-161 (200)
491 PRK13255 thiopurine S-methyltr 30.1 53 0.0011 24.8 2.6 16 68-83 53-68 (218)
492 PRK13886 conjugal transfer pro 29.8 94 0.002 24.0 3.8 38 46-83 3-40 (241)
493 KOG0855 Alkyl hydroperoxide re 29.6 2.2E+02 0.0047 20.6 5.4 57 24-81 71-131 (211)
494 TIGR02690 resist_ArsH arsenica 29.4 1.4E+02 0.0031 22.7 4.7 39 45-83 26-66 (219)
495 PRK05506 bifunctional sulfate 29.2 73 0.0016 28.7 3.7 38 44-81 458-495 (632)
496 PRK14494 putative molybdopteri 29.2 87 0.0019 23.9 3.6 40 48-87 3-42 (229)
497 PLN03006 carbonate dehydratase 29.1 80 0.0017 25.2 3.4 29 102-133 160-188 (301)
498 PRK06171 sorbitol-6-phosphate 29.1 2.2E+02 0.0048 21.9 6.0 33 48-84 11-43 (266)
499 PRK10162 acetyl esterase; Prov 29.1 2.6E+02 0.0056 22.6 6.5 40 45-85 248-287 (318)
500 COG0482 TrmU Predicted tRNA(5- 28.9 2.6E+02 0.0056 23.2 6.3 69 42-121 1-69 (356)
No 1
>KOG4667 consensus Predicted esterase [Lipid transport and metabolism]
Probab=100.00 E-value=2.5e-35 Score=205.86 Aligned_cols=252 Identities=64% Similarity=1.056 Sum_probs=230.4
Q ss_pred ceeeEEeeCCCCceEEEEEeecCCCcEEEEEcCCCCCCCCcchHHHHHHHHHcCccEEEEccccCCCCCCCccccchHHH
Q 022960 21 QRRRVVIPNSHGEKLVGILHETGSKQLVIVCHGFQSTKDRIPMVNLAAALEREGISAFRFDFSGNGESEGSFLYGNYRRE 100 (289)
Q Consensus 21 ~~~~~~~~~~~g~~l~~~~~~~~~~~~iv~~hG~~~~~~~~~~~~~~~~l~~~G~~v~~~d~~G~G~s~~~~~~~~~~~~ 100 (289)
..+.+.++...+.++.+.....++...+|++||+-.+...-+...++..|++.|+.++.+|++|.|+|.+.+.+..+...
T Consensus 9 ~~~~ivi~n~~ne~lvg~lh~tgs~e~vvlcHGfrS~Kn~~~~~~vA~~~e~~gis~fRfDF~GnGeS~gsf~~Gn~~~e 88 (269)
T KOG4667|consen 9 IAQKIVIPNSRNEKLVGLLHETGSTEIVVLCHGFRSHKNAIIMKNVAKALEKEGISAFRFDFSGNGESEGSFYYGNYNTE 88 (269)
T ss_pred eeeEEEeccCCCchhhcceeccCCceEEEEeeccccccchHHHHHHHHHHHhcCceEEEEEecCCCCcCCccccCcccch
Confidence 55678888888888888888899999999999999998766678899999999999999999999999999988888889
Q ss_pred HHHHHHHHHHHHhcCCceEEEEEeChhHHHHHHHHHhCCCccEEEEeccCCcccccccccccchhHhhhhhcCccccccc
Q 022960 101 AEDLRAIVQDFCAKGRVITAIIGHSKGGNAVLLYASKYNDISIVINISGRFNLKRGIEGRLGLGYLQRIKQNGFIDVRNK 180 (289)
Q Consensus 101 ~~d~~~~i~~l~~~~~~~~~l~G~S~Gg~~a~~~a~~~p~v~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (289)
++|+..+++++......--+++|||-||.+++.++.+++++.-+|.+++.++....+.+++.+.++.++...++.+....
T Consensus 89 adDL~sV~q~~s~~nr~v~vi~gHSkGg~Vvl~ya~K~~d~~~viNcsGRydl~~~I~eRlg~~~l~~ike~Gfid~~~r 168 (269)
T KOG4667|consen 89 ADDLHSVIQYFSNSNRVVPVILGHSKGGDVVLLYASKYHDIRNVINCSGRYDLKNGINERLGEDYLERIKEQGFIDVGPR 168 (269)
T ss_pred HHHHHHHHHHhccCceEEEEEEeecCccHHHHHHHHhhcCchheEEcccccchhcchhhhhcccHHHHHHhCCceecCcc
Confidence 99999999999765433348999999999999999999999999999999999998888999999999999999999999
Q ss_pred ccccccccChhhhhhhhccchhhhhcccccCceEEEEEeCCCCccChhhHHHHHhhCCCcEEEEEcCCCcccccCchHHH
Q 022960 181 KGKLEYRVTQESLMDRLSTDIHAACHMICQDCRVLTIHGTKDKMVPAEDALEFDKFIPNHKLHIIEGADHEFTSHQDELA 260 (289)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~i~g~~D~~~~~~~~~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~ 260 (289)
.+...+.++.+.+.+.+..+....+..+..+||||-+||..|.+||.+.++++++.+++.++.+++|+.|.+..+..+..
T Consensus 169 kG~y~~rvt~eSlmdrLntd~h~aclkId~~C~VLTvhGs~D~IVPve~AkefAk~i~nH~L~iIEgADHnyt~~q~~l~ 248 (269)
T KOG4667|consen 169 KGKYGYRVTEESLMDRLNTDIHEACLKIDKQCRVLTVHGSEDEIVPVEDAKEFAKIIPNHKLEIIEGADHNYTGHQSQLV 248 (269)
T ss_pred cCCcCceecHHHHHHHHhchhhhhhcCcCccCceEEEeccCCceeechhHHHHHHhccCCceEEecCCCcCccchhhhHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999988888888
Q ss_pred HHHHHHHHhhcC
Q 022960 261 SLVIQFIKANYQ 272 (289)
Q Consensus 261 ~~i~~fl~~~~~ 272 (289)
.....|......
T Consensus 249 ~lgl~f~k~r~n 260 (269)
T KOG4667|consen 249 SLGLEFIKTRIN 260 (269)
T ss_pred hhcceeEEeeec
Confidence 888877755443
No 2
>PLN02385 hydrolase; alpha/beta fold family protein
Probab=100.00 E-value=1.2e-33 Score=227.20 Aligned_cols=254 Identities=18% Similarity=0.238 Sum_probs=171.7
Q ss_pred cccceeeEEeeCCCCceEEEEEeecC---CCcEEEEEcCCCCCCCCcchHHHHHHHHHcCccEEEEccccCCCCCCCcc-
Q 022960 18 PVVQRRRVVIPNSHGEKLVGILHETG---SKQLVIVCHGFQSTKDRIPMVNLAAALEREGISAFRFDFSGNGESEGSFL- 93 (289)
Q Consensus 18 ~~~~~~~~~~~~~~g~~l~~~~~~~~---~~~~iv~~hG~~~~~~~~~~~~~~~~l~~~G~~v~~~d~~G~G~s~~~~~- 93 (289)
.+...++..+.+.+|.++.+..+.|. .+++|||+||++++.. .+|..+++.|+++||+|+++|+||||.|++...
T Consensus 57 ~~~~~~~~~~~~~~g~~l~~~~~~p~~~~~~~~iv~lHG~~~~~~-~~~~~~~~~l~~~g~~v~~~D~~G~G~S~~~~~~ 135 (349)
T PLN02385 57 SGIKTEESYEVNSRGVEIFSKSWLPENSRPKAAVCFCHGYGDTCT-FFFEGIARKIASSGYGVFAMDYPGFGLSEGLHGY 135 (349)
T ss_pred cCcceeeeeEEcCCCCEEEEEEEecCCCCCCeEEEEECCCCCccc-hHHHHHHHHHHhCCCEEEEecCCCCCCCCCCCCC
Confidence 34555666677789999998887663 4679999999998764 246889999999999999999999999987543
Q ss_pred ccchHHHHHHHHHHHHHHHhc---CCceEEEEEeChhHHHHHHHHHhCCC-ccEEEEeccCCcccccccc-cccchhHhh
Q 022960 94 YGNYRREAEDLRAIVQDFCAK---GRVITAIIGHSKGGNAVLLYASKYND-ISIVINISGRFNLKRGIEG-RLGLGYLQR 168 (289)
Q Consensus 94 ~~~~~~~~~d~~~~i~~l~~~---~~~~~~l~G~S~Gg~~a~~~a~~~p~-v~~~v~~~~~~~~~~~~~~-~~~~~~~~~ 168 (289)
..+++.+++|+.++++.+... ...+++|+||||||.+++.++.++|+ ++++|+++|.......... .....+...
T Consensus 136 ~~~~~~~~~dv~~~l~~l~~~~~~~~~~~~LvGhSmGG~val~~a~~~p~~v~glVLi~p~~~~~~~~~~~~~~~~~~~~ 215 (349)
T PLN02385 136 IPSFDDLVDDVIEHYSKIKGNPEFRGLPSFLFGQSMGGAVALKVHLKQPNAWDGAILVAPMCKIADDVVPPPLVLQILIL 215 (349)
T ss_pred cCCHHHHHHHHHHHHHHHHhccccCCCCEEEEEeccchHHHHHHHHhCcchhhheeEecccccccccccCchHHHHHHHH
Confidence 347788899999999988543 23479999999999999999999999 9999999986543221100 000000000
Q ss_pred hhh---c-------Ccccc-ccc--------ccccccc--cChhhhhhhhccchhhhhcccccCceEEEEEeCCCCccCh
Q 022960 169 IKQ---N-------GFIDV-RNK--------KGKLEYR--VTQESLMDRLSTDIHAACHMICQDCRVLTIHGTKDKMVPA 227 (289)
Q Consensus 169 ~~~---~-------~~~~~-~~~--------~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~P~l~i~g~~D~~~~~ 227 (289)
+.. . .+... ... .....+. .........+...........++++|+|+++|++|.++|+
T Consensus 216 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~i~~P~Lii~G~~D~vv~~ 295 (349)
T PLN02385 216 LANLLPKAKLVPQKDLAELAFRDLKKRKMAEYNVIAYKDKPRLRTAVELLRTTQEIEMQLEEVSLPLLILHGEADKVTDP 295 (349)
T ss_pred HHHHCCCceecCCCccccccccCHHHHHHhhcCcceeCCCcchHHHHHHHHHHHHHHHhcccCCCCEEEEEeCCCCccCh
Confidence 000 0 00000 000 0000000 0000111111110011111225689999999999999999
Q ss_pred hhHHHHHhhC--CCcEEEEEcCCCcccc-cCchH----HHHHHHHHHHhhcC
Q 022960 228 EDALEFDKFI--PNHKLHIIEGADHEFT-SHQDE----LASLVIQFIKANYQ 272 (289)
Q Consensus 228 ~~~~~~~~~~--~~~~~~~~~~~gH~~~-~~~~~----~~~~i~~fl~~~~~ 272 (289)
+.++.+++.+ +++++++++++||.++ +++++ +++.|.+||+++..
T Consensus 296 ~~~~~l~~~~~~~~~~l~~i~~~gH~l~~e~p~~~~~~v~~~i~~wL~~~~~ 347 (349)
T PLN02385 296 SVSKFLYEKASSSDKKLKLYEDAYHSILEGEPDEMIFQVLDDIISWLDSHST 347 (349)
T ss_pred HHHHHHHHHcCCCCceEEEeCCCeeecccCCChhhHHHHHHHHHHHHHHhcc
Confidence 9999999887 4689999999999976 55554 78889999988764
No 3
>PLN02298 hydrolase, alpha/beta fold family protein
Probab=100.00 E-value=6.7e-33 Score=221.67 Aligned_cols=255 Identities=15% Similarity=0.209 Sum_probs=171.3
Q ss_pred cccceeeEEeeCCCCceEEEEEeecC----CCcEEEEEcCCCCCCCCcchHHHHHHHHHcCccEEEEccccCCCCCCCcc
Q 022960 18 PVVQRRRVVIPNSHGEKLVGILHETG----SKQLVIVCHGFQSTKDRIPMVNLAAALEREGISAFRFDFSGNGESEGSFL 93 (289)
Q Consensus 18 ~~~~~~~~~~~~~~g~~l~~~~~~~~----~~~~iv~~hG~~~~~~~~~~~~~~~~l~~~G~~v~~~d~~G~G~s~~~~~ 93 (289)
.++..+...+.+.||.+++++.+.+. .+++|||+||++.+.. +.|..++..|+++||+|+++|+||||.|.+...
T Consensus 28 ~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~VvllHG~~~~~~-~~~~~~~~~L~~~Gy~V~~~D~rGhG~S~~~~~ 106 (330)
T PLN02298 28 KGIKGSKSFFTSPRGLSLFTRSWLPSSSSPPRALIFMVHGYGNDIS-WTFQSTAIFLAQMGFACFALDLEGHGRSEGLRA 106 (330)
T ss_pred cCCccccceEEcCCCCEEEEEEEecCCCCCCceEEEEEcCCCCCcc-eehhHHHHHHHhCCCEEEEecCCCCCCCCCccc
Confidence 34666777888899999998776543 3567999999987653 457788889999999999999999999975433
Q ss_pred -ccchHHHHHHHHHHHHHHHhc---CCceEEEEEeChhHHHHHHHHHhCCC-ccEEEEeccCCcccccccccc-cch---
Q 022960 94 -YGNYRREAEDLRAIVQDFCAK---GRVITAIIGHSKGGNAVLLYASKYND-ISIVINISGRFNLKRGIEGRL-GLG--- 164 (289)
Q Consensus 94 -~~~~~~~~~d~~~~i~~l~~~---~~~~~~l~G~S~Gg~~a~~~a~~~p~-v~~~v~~~~~~~~~~~~~~~~-~~~--- 164 (289)
..+++..++|+.++++++... ...+++|+||||||.+++.++..+|+ |+++|+++|............ ...
T Consensus 107 ~~~~~~~~~~D~~~~i~~l~~~~~~~~~~i~l~GhSmGG~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~ 186 (330)
T PLN02298 107 YVPNVDLVVEDCLSFFNSVKQREEFQGLPRFLYGESMGGAICLLIHLANPEGFDGAVLVAPMCKISDKIRPPWPIPQILT 186 (330)
T ss_pred cCCCHHHHHHHHHHHHHHHHhcccCCCCCEEEEEecchhHHHHHHHhcCcccceeEEEecccccCCcccCCchHHHHHHH
Confidence 346788899999999999754 23479999999999999999999998 999999998754332211000 000
Q ss_pred hHhhhhhcCc----ccccccc------------ccccccc--ChhhhhhhhccchhhhhcccccCceEEEEEeCCCCccC
Q 022960 165 YLQRIKQNGF----IDVRNKK------------GKLEYRV--TQESLMDRLSTDIHAACHMICQDCRVLTIHGTKDKMVP 226 (289)
Q Consensus 165 ~~~~~~~~~~----~~~~~~~------------~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~P~l~i~g~~D~~~~ 226 (289)
+...+..... ....... ....+.. ....+...+............+++|+|+++|++|.++|
T Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~PvLii~G~~D~ivp 266 (330)
T PLN02298 187 FVARFLPTLAIVPTADLLEKSVKVPAKKIIAKRNPMRYNGKPRLGTVVELLRVTDYLGKKLKDVSIPFIVLHGSADVVTD 266 (330)
T ss_pred HHHHHCCCCccccCCCcccccccCHHHHHHHHhCccccCCCccHHHHHHHHHHHHHHHHhhhhcCCCEEEEecCCCCCCC
Confidence 0111100000 0000000 0000000 00000000000000011122468999999999999999
Q ss_pred hhhHHHHHhhCC--CcEEEEEcCCCcccc-cCch----HHHHHHHHHHHhhcCC
Q 022960 227 AEDALEFDKFIP--NHKLHIIEGADHEFT-SHQD----ELASLVIQFIKANYQK 273 (289)
Q Consensus 227 ~~~~~~~~~~~~--~~~~~~~~~~gH~~~-~~~~----~~~~~i~~fl~~~~~~ 273 (289)
++.++.+++.++ +++++++++++|.++ ++++ ++.+.|.+||++.+..
T Consensus 267 ~~~~~~l~~~i~~~~~~l~~~~~a~H~~~~e~pd~~~~~~~~~i~~fl~~~~~~ 320 (330)
T PLN02298 267 PDVSRALYEEAKSEDKTIKIYDGMMHSLLFGEPDENIEIVRRDILSWLNERCTG 320 (330)
T ss_pred HHHHHHHHHHhccCCceEEEcCCcEeeeecCCCHHHHHHHHHHHHHHHHHhccC
Confidence 999999988874 689999999999975 5553 4778889999988644
No 4
>PRK00870 haloalkane dehalogenase; Provisional
Probab=100.00 E-value=5.2e-33 Score=219.68 Aligned_cols=246 Identities=18% Similarity=0.183 Sum_probs=161.3
Q ss_pred ccceeeEEeeCCCCce--EEEEEeecCCCcEEEEEcCCCCCCCCcchHHHHHHHHHcCccEEEEccccCCCCCCCc--cc
Q 022960 19 VVQRRRVVIPNSHGEK--LVGILHETGSKQLVIVCHGFQSTKDRIPMVNLAAALEREGISAFRFDFSGNGESEGSF--LY 94 (289)
Q Consensus 19 ~~~~~~~~~~~~~g~~--l~~~~~~~~~~~~iv~~hG~~~~~~~~~~~~~~~~l~~~G~~v~~~d~~G~G~s~~~~--~~ 94 (289)
.+..+.+++...+|.+ +++...+.+.+|+|||+||++++... |..+++.|.+.||+|+++|+||||.|+.+. ..
T Consensus 18 ~~~~~~~~~~~~~~~~~~i~y~~~G~~~~~~lvliHG~~~~~~~--w~~~~~~L~~~gy~vi~~Dl~G~G~S~~~~~~~~ 95 (302)
T PRK00870 18 PFAPHYVDVDDGDGGPLRMHYVDEGPADGPPVLLLHGEPSWSYL--YRKMIPILAAAGHRVIAPDLIGFGRSDKPTRRED 95 (302)
T ss_pred CCCceeEeecCCCCceEEEEEEecCCCCCCEEEEECCCCCchhh--HHHHHHHHHhCCCEEEEECCCCCCCCCCCCCccc
Confidence 3455566666555654 44433333357899999999988854 999999998889999999999999997653 24
Q ss_pred cchHHHHHHHHHHHHHHHhcCCceEEEEEeChhHHHHHHHHHhCCC-ccEEEEeccCCccccc-----ccccc------c
Q 022960 95 GNYRREAEDLRAIVQDFCAKGRVITAIIGHSKGGNAVLLYASKYND-ISIVINISGRFNLKRG-----IEGRL------G 162 (289)
Q Consensus 95 ~~~~~~~~d~~~~i~~l~~~~~~~~~l~G~S~Gg~~a~~~a~~~p~-v~~~v~~~~~~~~~~~-----~~~~~------~ 162 (289)
.+++++++|+.++++.+ +.++++++||||||.+++.++..+|+ |+++|++++....... ..... .
T Consensus 96 ~~~~~~a~~l~~~l~~l---~~~~v~lvGhS~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (302)
T PRK00870 96 YTYARHVEWMRSWFEQL---DLTDVTLVCQDWGGLIGLRLAAEHPDRFARLVVANTGLPTGDGPMPDAFWAWRAFSQYSP 172 (302)
T ss_pred CCHHHHHHHHHHHHHHc---CCCCEEEEEEChHHHHHHHHHHhChhheeEEEEeCCCCCCccccchHHHhhhhcccccCc
Confidence 57788899999999887 77789999999999999999999999 9999999864321110 00000 0
Q ss_pred chhHhhhhhcCccc-cccc--------ccccccccChhhhhhhh---------ccchhhhhcccccCceEEEEEeCCCCc
Q 022960 163 LGYLQRIKQNGFID-VRNK--------KGKLEYRVTQESLMDRL---------STDIHAACHMICQDCRVLTIHGTKDKM 224 (289)
Q Consensus 163 ~~~~~~~~~~~~~~-~~~~--------~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~P~l~i~g~~D~~ 224 (289)
.............. .... .....+......+.... ...........++++|+++|+|++|.+
T Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~lii~G~~D~~ 252 (302)
T PRK00870 173 VLPVGRLVNGGTVRDLSDAVRAAYDAPFPDESYKAGARAFPLLVPTSPDDPAVAANRAAWAVLERWDKPFLTAFSDSDPI 252 (302)
T ss_pred hhhHHHHhhccccccCCHHHHHHhhcccCChhhhcchhhhhhcCCCCCCCcchHHHHHHHHhhhcCCCceEEEecCCCCc
Confidence 00000000000000 0000 00000000000000000 000000011235699999999999999
Q ss_pred cChhhHHHHHhhCCCcE---EEEEcCCCcccc-cCchHHHHHHHHHHHhh
Q 022960 225 VPAEDALEFDKFIPNHK---LHIIEGADHEFT-SHQDELASLVIQFIKAN 270 (289)
Q Consensus 225 ~~~~~~~~~~~~~~~~~---~~~~~~~gH~~~-~~~~~~~~~i~~fl~~~ 270 (289)
+|... +.+.+.+++++ +.+++++||+++ ++++++++.|.+|++++
T Consensus 253 ~~~~~-~~~~~~~~~~~~~~~~~i~~~gH~~~~e~p~~~~~~l~~fl~~~ 301 (302)
T PRK00870 253 TGGGD-AILQKRIPGAAGQPHPTIKGAGHFLQEDSGEELAEAVLEFIRAT 301 (302)
T ss_pred ccCch-HHHHhhcccccccceeeecCCCccchhhChHHHHHHHHHHHhcC
Confidence 99866 88999998876 889999999966 67789999999999753
No 5
>PHA02857 monoglyceride lipase; Provisional
Probab=100.00 E-value=2e-32 Score=213.86 Aligned_cols=242 Identities=19% Similarity=0.233 Sum_probs=161.3
Q ss_pred eeCCCCceEEEEEeecC--CCcEEEEEcCCCCCCCCcchHHHHHHHHHcCccEEEEccccCCCCCCCc-cccchHHHHHH
Q 022960 27 IPNSHGEKLVGILHETG--SKQLVIVCHGFQSTKDRIPMVNLAAALEREGISAFRFDFSGNGESEGSF-LYGNYRREAED 103 (289)
Q Consensus 27 ~~~~~g~~l~~~~~~~~--~~~~iv~~hG~~~~~~~~~~~~~~~~l~~~G~~v~~~d~~G~G~s~~~~-~~~~~~~~~~d 103 (289)
+...||..+.+.++.|+ +++.|+++||++++.. .|..+++.|+++||+|+++|+||||.|.+.. ...++...++|
T Consensus 5 ~~~~~g~~l~~~~~~~~~~~~~~v~llHG~~~~~~--~~~~~~~~l~~~g~~via~D~~G~G~S~~~~~~~~~~~~~~~d 82 (276)
T PHA02857 5 MFNLDNDYIYCKYWKPITYPKALVFISHGAGEHSG--RYEELAENISSLGILVFSHDHIGHGRSNGEKMMIDDFGVYVRD 82 (276)
T ss_pred eecCCCCEEEEEeccCCCCCCEEEEEeCCCccccc--hHHHHHHHHHhCCCEEEEccCCCCCCCCCccCCcCCHHHHHHH
Confidence 34568999999888774 4667777799998875 4999999999999999999999999997643 23466677888
Q ss_pred HHHHHHHHHhc-CCceEEEEEeChhHHHHHHHHHhCCC-ccEEEEeccCCcccccc-cccccchhHhhhhhcCccc----
Q 022960 104 LRAIVQDFCAK-GRVITAIIGHSKGGNAVLLYASKYND-ISIVINISGRFNLKRGI-EGRLGLGYLQRIKQNGFID---- 176 (289)
Q Consensus 104 ~~~~i~~l~~~-~~~~~~l~G~S~Gg~~a~~~a~~~p~-v~~~v~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~---- 176 (289)
+.+.++.++.. ...+++|+||||||.+|+.++.++|+ ++++|+++|........ ...................
T Consensus 83 ~~~~l~~~~~~~~~~~~~lvG~S~GG~ia~~~a~~~p~~i~~lil~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (276)
T PHA02857 83 VVQHVVTIKSTYPGVPVFLLGHSMGATISILAAYKNPNLFTAMILMSPLVNAEAVPRLNLLAAKLMGIFYPNKIVGKLCP 162 (276)
T ss_pred HHHHHHHHHhhCCCCCEEEEEcCchHHHHHHHHHhCccccceEEEeccccccccccHHHHHHHHHHHHhCCCCccCCCCH
Confidence 88888877544 34579999999999999999999999 99999999865421100 0000000000000000000
Q ss_pred -ccccc--ccccc---------ccChhhhhhhhccchhhhhcccccCceEEEEEeCCCCccChhhHHHHHhhC-CCcEEE
Q 022960 177 -VRNKK--GKLEY---------RVTQESLMDRLSTDIHAACHMICQDCRVLTIHGTKDKMVPAEDALEFDKFI-PNHKLH 243 (289)
Q Consensus 177 -~~~~~--~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~i~g~~D~~~~~~~~~~~~~~~-~~~~~~ 243 (289)
..... ....+ ......................++++|+|+++|++|.++|++.++.+.+.+ +++++.
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~Pvliv~G~~D~i~~~~~~~~l~~~~~~~~~~~ 242 (276)
T PHA02857 163 ESVSRDMDEVYKYQYDPLVNHEKIKAGFASQVLKATNKVRKIIPKIKTPILILQGTNNEISDVSGAYYFMQHANCNREIK 242 (276)
T ss_pred hhccCCHHHHHHHhcCCCccCCCccHHHHHHHHHHHHHHHHhcccCCCCEEEEecCCCCcCChHHHHHHHHHccCCceEE
Confidence 00000 00000 000000000000000001112256899999999999999999999998887 468999
Q ss_pred EEcCCCcccccC----chHHHHHHHHHHHhh
Q 022960 244 IIEGADHEFTSH----QDELASLVIQFIKAN 270 (289)
Q Consensus 244 ~~~~~gH~~~~~----~~~~~~~i~~fl~~~ 270 (289)
+++++||.++.+ .+++.+.+.+||+++
T Consensus 243 ~~~~~gH~~~~e~~~~~~~~~~~~~~~l~~~ 273 (276)
T PHA02857 243 IYEGAKHHLHKETDEVKKSVMKEIETWIFNR 273 (276)
T ss_pred EeCCCcccccCCchhHHHHHHHHHHHHHHHh
Confidence 999999997744 246899999999875
No 6
>TIGR02240 PHA_depoly_arom poly(3-hydroxyalkanoate) depolymerase. This family consists of the polyhydroxyalkanoic acid (PHA) depolymerase of Pseudomonas oleovorans, Pseudomonas putida BM01, and related species. This enzyme is part of polyester storage and mobilization system as in many bacteria. However, species containing this enzyme are unusual in their capacity to produce aromatic polyesters when grown on carbon sources such as benzoic acid or phenylacetic acid.
Probab=100.00 E-value=1.8e-32 Score=213.88 Aligned_cols=237 Identities=16% Similarity=0.230 Sum_probs=162.1
Q ss_pred CCCceEEEEEeecC-CCcEEEEEcCCCCCCCCcchHHHHHHHHHcCccEEEEccccCCCCCCCccccchHHHHHHHHHHH
Q 022960 30 SHGEKLVGILHETG-SKQLVIVCHGFQSTKDRIPMVNLAAALEREGISAFRFDFSGNGESEGSFLYGNYRREAEDLRAIV 108 (289)
Q Consensus 30 ~~g~~l~~~~~~~~-~~~~iv~~hG~~~~~~~~~~~~~~~~l~~~G~~v~~~d~~G~G~s~~~~~~~~~~~~~~d~~~~i 108 (289)
.+|.++++.+...+ .+++|||+||++++... |..+.+.|.+. |+|+++|+||||.|+.+....+++.+++|+.+++
T Consensus 9 ~~~~~~~~~~~~~~~~~~plvllHG~~~~~~~--w~~~~~~L~~~-~~vi~~Dl~G~G~S~~~~~~~~~~~~~~~~~~~i 85 (276)
T TIGR02240 9 LDGQSIRTAVRPGKEGLTPLLIFNGIGANLEL--VFPFIEALDPD-LEVIAFDVPGVGGSSTPRHPYRFPGLAKLAARML 85 (276)
T ss_pred cCCcEEEEEEecCCCCCCcEEEEeCCCcchHH--HHHHHHHhccC-ceEEEECCCCCCCCCCCCCcCcHHHHHHHHHHHH
Confidence 46778887765433 44799999999999864 89999999774 9999999999999986655567889999999999
Q ss_pred HHHHhcCCceEEEEEeChhHHHHHHHHHhCCC-ccEEEEeccCCcccc--ccccc---c-c-chhHhhhh-----hcCcc
Q 022960 109 QDFCAKGRVITAIIGHSKGGNAVLLYASKYND-ISIVINISGRFNLKR--GIEGR---L-G-LGYLQRIK-----QNGFI 175 (289)
Q Consensus 109 ~~l~~~~~~~~~l~G~S~Gg~~a~~~a~~~p~-v~~~v~~~~~~~~~~--~~~~~---~-~-~~~~~~~~-----~~~~~ 175 (289)
+.+ +.++++|+||||||.+++.+|.++|+ |+++|++++...... ..... . . ..+..... ...+.
T Consensus 86 ~~l---~~~~~~LvG~S~GG~va~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (276)
T TIGR02240 86 DYL---DYGQVNAIGVSWGGALAQQFAHDYPERCKKLILAATAAGAVMVPGKPKVLMMMASPRRYIQPSHGIHIAPDIYG 162 (276)
T ss_pred HHh---CcCceEEEEECHHHHHHHHHHHHCHHHhhheEEeccCCccccCCCchhHHHHhcCchhhhccccccchhhhhcc
Confidence 998 77789999999999999999999999 999999998654210 00000 0 0 00000000 00000
Q ss_pred cccccccccccc----cC----hhhhhhhhc-cchhhhhcccccCceEEEEEeCCCCccChhhHHHHHhhCCCcEEEEEc
Q 022960 176 DVRNKKGKLEYR----VT----QESLMDRLS-TDIHAACHMICQDCRVLTIHGTKDKMVPAEDALEFDKFIPNHKLHIIE 246 (289)
Q Consensus 176 ~~~~~~~~~~~~----~~----~~~~~~~~~-~~~~~~~~~~~~~~P~l~i~g~~D~~~~~~~~~~~~~~~~~~~~~~~~ 246 (289)
............ .. ......... .+........++++|+|+++|++|+++|++..+.+.+.++++++++++
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~lii~G~~D~~v~~~~~~~l~~~~~~~~~~~i~ 242 (276)
T TIGR02240 163 GAFRRDPELAMAHASKVRSGGKLGYYWQLFAGLGWTSIHWLHKIQQPTLVLAGDDDPIIPLINMRLLAWRIPNAELHIID 242 (276)
T ss_pred ceeeccchhhhhhhhhcccCCCchHHHHHHHHcCCchhhHhhcCCCCEEEEEeCCCCcCCHHHHHHHHHhCCCCEEEEEc
Confidence 000000000000 00 000000000 000001111256899999999999999999999999999999999998
Q ss_pred CCCcccc-cCchHHHHHHHHHHHhhcCC
Q 022960 247 GADHEFT-SHQDELASLVIQFIKANYQK 273 (289)
Q Consensus 247 ~~gH~~~-~~~~~~~~~i~~fl~~~~~~ 273 (289)
+ ||+++ ++++++++.|.+|+++....
T Consensus 243 ~-gH~~~~e~p~~~~~~i~~fl~~~~~~ 269 (276)
T TIGR02240 243 D-GHLFLITRAEAVAPIIMKFLAEERQR 269 (276)
T ss_pred C-CCchhhccHHHHHHHHHHHHHHhhhh
Confidence 5 99965 66789999999999876543
No 7
>PRK10749 lysophospholipase L2; Provisional
Probab=100.00 E-value=4.3e-32 Score=216.32 Aligned_cols=248 Identities=15% Similarity=0.171 Sum_probs=165.8
Q ss_pred ceeeEEeeCCCCceEEEEEeec-CCCcEEEEEcCCCCCCCCcchHHHHHHHHHcCccEEEEccccCCCCCCCcc------
Q 022960 21 QRRRVVIPNSHGEKLVGILHET-GSKQLVIVCHGFQSTKDRIPMVNLAAALEREGISAFRFDFSGNGESEGSFL------ 93 (289)
Q Consensus 21 ~~~~~~~~~~~g~~l~~~~~~~-~~~~~iv~~hG~~~~~~~~~~~~~~~~l~~~G~~v~~~d~~G~G~s~~~~~------ 93 (289)
..++..+...+|.++++..+++ .++++||++||++++... |..++..|.+.||+|+++|+||||.|.....
T Consensus 29 ~~~~~~~~~~~g~~l~~~~~~~~~~~~~vll~HG~~~~~~~--y~~~~~~l~~~g~~v~~~D~~G~G~S~~~~~~~~~~~ 106 (330)
T PRK10749 29 QREEAEFTGVDDIPIRFVRFRAPHHDRVVVICPGRIESYVK--YAELAYDLFHLGYDVLIIDHRGQGRSGRLLDDPHRGH 106 (330)
T ss_pred hccceEEEcCCCCEEEEEEccCCCCCcEEEEECCccchHHH--HHHHHHHHHHCCCeEEEEcCCCCCCCCCCCCCCCcCc
Confidence 3456777788999999887765 467899999999988753 8889999999999999999999999975421
Q ss_pred ccchHHHHHHHHHHHHHHHhc-CCceEEEEEeChhHHHHHHHHHhCCC-ccEEEEeccCCcccccccccccchhHhhhhh
Q 022960 94 YGNYRREAEDLRAIVQDFCAK-GRVITAIIGHSKGGNAVLLYASKYND-ISIVINISGRFNLKRGIEGRLGLGYLQRIKQ 171 (289)
Q Consensus 94 ~~~~~~~~~d~~~~i~~l~~~-~~~~~~l~G~S~Gg~~a~~~a~~~p~-v~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (289)
..+++.+++|+.++++.+... +..+++++||||||.+++.++..+|+ ++++|+++|......................
T Consensus 107 ~~~~~~~~~d~~~~~~~~~~~~~~~~~~l~GhSmGG~ia~~~a~~~p~~v~~lvl~~p~~~~~~~~~~~~~~~~~~~~~~ 186 (330)
T PRK10749 107 VERFNDYVDDLAAFWQQEIQPGPYRKRYALAHSMGGAILTLFLQRHPGVFDAIALCAPMFGIVLPLPSWMARRILNWAEG 186 (330)
T ss_pred cccHHHHHHHHHHHHHHHHhcCCCCCeEEEEEcHHHHHHHHHHHhCCCCcceEEEECchhccCCCCCcHHHHHHHHHHHH
Confidence 246788899999999887544 56789999999999999999999999 9999999986543211111100000000000
Q ss_pred c-----Cc----cccccccccccc-ccChh---h--------------------hhhhhccchhhhhcccccCceEEEEE
Q 022960 172 N-----GF----IDVRNKKGKLEY-RVTQE---S--------------------LMDRLSTDIHAACHMICQDCRVLTIH 218 (289)
Q Consensus 172 ~-----~~----~~~~~~~~~~~~-~~~~~---~--------------------~~~~~~~~~~~~~~~~~~~~P~l~i~ 218 (289)
. .+ ...........+ ..... . ....+...........++++|+|+++
T Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~P~Lii~ 266 (330)
T PRK10749 187 HPRIRDGYAIGTGRWRPLPFAINVLTHSRERYRRNLRFYADDPELRVGGPTYHWVRESILAGEQVLAGAGDITTPLLLLQ 266 (330)
T ss_pred hcCCCCcCCCCCCCCCCCCcCCCCCCCCHHHHHHHHHHHHhCCCcccCCCcHHHHHHHHHHHHHHHhhccCCCCCEEEEE
Confidence 0 00 000000000000 00000 0 00000000000011224689999999
Q ss_pred eCCCCccChhhHHHHHhhC-------CCcEEEEEcCCCcccccCc----hHHHHHHHHHHHhh
Q 022960 219 GTKDKMVPAEDALEFDKFI-------PNHKLHIIEGADHEFTSHQ----DELASLVIQFIKAN 270 (289)
Q Consensus 219 g~~D~~~~~~~~~~~~~~~-------~~~~~~~~~~~gH~~~~~~----~~~~~~i~~fl~~~ 270 (289)
|++|.+++++.++.+++.+ +++++++++|++|.++.+. +++.+.|.+||+++
T Consensus 267 G~~D~vv~~~~~~~~~~~l~~~~~~~~~~~l~~~~gagH~~~~E~~~~r~~v~~~i~~fl~~~ 329 (330)
T PRK10749 267 AEEERVVDNRMHDRFCEARTAAGHPCEGGKPLVIKGAYHEILFEKDAMRSVALNAIVDFFNRH 329 (330)
T ss_pred eCCCeeeCHHHHHHHHHHHhhcCCCCCCceEEEeCCCcchhhhCCcHHHHHHHHHHHHHHhhc
Confidence 9999999999998888765 3468999999999976433 46888899999764
No 8
>PLN02824 hydrolase, alpha/beta fold family protein
Probab=100.00 E-value=3.1e-32 Score=214.60 Aligned_cols=232 Identities=17% Similarity=0.213 Sum_probs=157.6
Q ss_pred CCceEEEEEeecCCCcEEEEEcCCCCCCCCcchHHHHHHHHHcCccEEEEccccCCCCCCCc-------cccchHHHHHH
Q 022960 31 HGEKLVGILHETGSKQLVIVCHGFQSTKDRIPMVNLAAALEREGISAFRFDFSGNGESEGSF-------LYGNYRREAED 103 (289)
Q Consensus 31 ~g~~l~~~~~~~~~~~~iv~~hG~~~~~~~~~~~~~~~~l~~~G~~v~~~d~~G~G~s~~~~-------~~~~~~~~~~d 103 (289)
+|.++++...+. ++++|||+||++++... |..+.+.|+++ |+|+++|+||||.|+... ...+++++++|
T Consensus 16 ~~~~i~y~~~G~-~~~~vlllHG~~~~~~~--w~~~~~~L~~~-~~vi~~DlpG~G~S~~~~~~~~~~~~~~~~~~~a~~ 91 (294)
T PLN02824 16 KGYNIRYQRAGT-SGPALVLVHGFGGNADH--WRKNTPVLAKS-HRVYAIDLLGYGYSDKPNPRSAPPNSFYTFETWGEQ 91 (294)
T ss_pred cCeEEEEEEcCC-CCCeEEEECCCCCChhH--HHHHHHHHHhC-CeEEEEcCCCCCCCCCCccccccccccCCHHHHHHH
Confidence 477777544332 46899999999999854 99999999987 799999999999998653 24678899999
Q ss_pred HHHHHHHHHhcCCceEEEEEeChhHHHHHHHHHhCCC-ccEEEEeccCCcccc-----cccccccchhHhhhhh----cC
Q 022960 104 LRAIVQDFCAKGRVITAIIGHSKGGNAVLLYASKYND-ISIVINISGRFNLKR-----GIEGRLGLGYLQRIKQ----NG 173 (289)
Q Consensus 104 ~~~~i~~l~~~~~~~~~l~G~S~Gg~~a~~~a~~~p~-v~~~v~~~~~~~~~~-----~~~~~~~~~~~~~~~~----~~ 173 (289)
+.++++.+ +.++++++||||||.+++.+|.++|+ |+++|++++...... .........+...+.. ..
T Consensus 92 l~~~l~~l---~~~~~~lvGhS~Gg~va~~~a~~~p~~v~~lili~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (294)
T PLN02824 92 LNDFCSDV---VGDPAFVICNSVGGVVGLQAAVDAPELVRGVMLINISLRGLHIKKQPWLGRPFIKAFQNLLRETAVGKA 168 (294)
T ss_pred HHHHHHHh---cCCCeEEEEeCHHHHHHHHHHHhChhheeEEEEECCCcccccccccchhhhHHHHHHHHHHhchhHHHH
Confidence 99999988 67899999999999999999999999 999999987542110 0000000000000000 00
Q ss_pred c----------ccc----cccccccccc---------cC---hhhhhhhhcc-ch-hhhhcccccCceEEEEEeCCCCcc
Q 022960 174 F----------IDV----RNKKGKLEYR---------VT---QESLMDRLST-DI-HAACHMICQDCRVLTIHGTKDKMV 225 (289)
Q Consensus 174 ~----------~~~----~~~~~~~~~~---------~~---~~~~~~~~~~-~~-~~~~~~~~~~~P~l~i~g~~D~~~ 225 (289)
+ ... .......... .. ...+...... .. .......++++|+|+|+|++|.++
T Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~lvi~G~~D~~~ 248 (294)
T PLN02824 169 FFKSVATPETVKNILCQCYHDDSAVTDELVEAILRPGLEPGAVDVFLDFISYSGGPLPEELLPAVKCPVLIAWGEKDPWE 248 (294)
T ss_pred HHHhhcCHHHHHHHHHHhccChhhccHHHHHHHHhccCCchHHHHHHHHhccccccchHHHHhhcCCCeEEEEecCCCCC
Confidence 0 000 0000000000 00 0001111100 00 001112256999999999999999
Q ss_pred ChhhHHHHHhhCCCcEEEEEcCCCcccc-cCchHHHHHHHHHHHh
Q 022960 226 PAEDALEFDKFIPNHKLHIIEGADHEFT-SHQDELASLVIQFIKA 269 (289)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~gH~~~-~~~~~~~~~i~~fl~~ 269 (289)
|.+.++.+.+..+++++++++++||+++ ++++++++.|.+|+++
T Consensus 249 ~~~~~~~~~~~~~~~~~~~i~~~gH~~~~e~p~~~~~~i~~fl~~ 293 (294)
T PLN02824 249 PVELGRAYANFDAVEDFIVLPGVGHCPQDEAPELVNPLIESFVAR 293 (294)
T ss_pred ChHHHHHHHhcCCccceEEeCCCCCChhhhCHHHHHHHHHHHHhc
Confidence 9999999888888899999999999966 7788999999999975
No 9
>PRK03592 haloalkane dehalogenase; Provisional
Probab=100.00 E-value=3.1e-31 Score=209.08 Aligned_cols=232 Identities=13% Similarity=0.150 Sum_probs=155.7
Q ss_pred CCceEEEEEeecCCCcEEEEEcCCCCCCCCcchHHHHHHHHHcCccEEEEccccCCCCCCCccccchHHHHHHHHHHHHH
Q 022960 31 HGEKLVGILHETGSKQLVIVCHGFQSTKDRIPMVNLAAALEREGISAFRFDFSGNGESEGSFLYGNYRREAEDLRAIVQD 110 (289)
Q Consensus 31 ~g~~l~~~~~~~~~~~~iv~~hG~~~~~~~~~~~~~~~~l~~~G~~v~~~d~~G~G~s~~~~~~~~~~~~~~d~~~~i~~ 110 (289)
+|.+++|.. .+++++|||+||++++.. .|..+++.|.+. ++|+++|+||||.|+.+....++..+++|+.++++.
T Consensus 15 ~g~~i~y~~--~G~g~~vvllHG~~~~~~--~w~~~~~~L~~~-~~via~D~~G~G~S~~~~~~~~~~~~a~dl~~ll~~ 89 (295)
T PRK03592 15 LGSRMAYIE--TGEGDPIVFLHGNPTSSY--LWRNIIPHLAGL-GRCLAPDLIGMGASDKPDIDYTFADHARYLDAWFDA 89 (295)
T ss_pred CCEEEEEEE--eCCCCEEEEECCCCCCHH--HHHHHHHHHhhC-CEEEEEcCCCCCCCCCCCCCCCHHHHHHHHHHHHHH
Confidence 677777544 456789999999998884 599999999998 599999999999998766556788999999999998
Q ss_pred HHhcCCceEEEEEeChhHHHHHHHHHhCCC-ccEEEEeccCCcccc--cccccccchhHhhhhhcCccc--------ccc
Q 022960 111 FCAKGRVITAIIGHSKGGNAVLLYASKYND-ISIVINISGRFNLKR--GIEGRLGLGYLQRIKQNGFID--------VRN 179 (289)
Q Consensus 111 l~~~~~~~~~l~G~S~Gg~~a~~~a~~~p~-v~~~v~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~--------~~~ 179 (289)
+ +.++++++|||+||.+|+.++.++|+ |+++|++++...... ...... ......+....... ...
T Consensus 90 l---~~~~~~lvGhS~Gg~ia~~~a~~~p~~v~~lil~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (295)
T PRK03592 90 L---GLDDVVLVGHDWGSALGFDWAARHPDRVRGIAFMEAIVRPMTWDDFPPAV-RELFQALRSPGEGEEMVLEENVFIE 165 (295)
T ss_pred h---CCCCeEEEEECHHHHHHHHHHHhChhheeEEEEECCCCCCcchhhcchhH-HHHHHHHhCcccccccccchhhHHh
Confidence 8 77899999999999999999999999 999999997432110 000000 00011110000000 000
Q ss_pred -ccccc-ccccChh----------------hhhhhhcc--------chh-----hhhcccccCceEEEEEeCCCCccChh
Q 022960 180 -KKGKL-EYRVTQE----------------SLMDRLST--------DIH-----AACHMICQDCRVLTIHGTKDKMVPAE 228 (289)
Q Consensus 180 -~~~~~-~~~~~~~----------------~~~~~~~~--------~~~-----~~~~~~~~~~P~l~i~g~~D~~~~~~ 228 (289)
..... ......+ ........ ... ......++++|+|+|+|++|.++++.
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~lii~G~~D~~~~~~ 245 (295)
T PRK03592 166 RVLPGSILRPLSDEEMAVYRRPFPTPESRRPTLSWPRELPIDGEPADVVALVEEYAQWLATSDVPKLLINAEPGAILTTG 245 (295)
T ss_pred hcccCcccccCCHHHHHHHHhhcCCchhhhhhhhhhhhcCCCCcchhhHhhhhHhHHHhccCCCCeEEEeccCCcccCcH
Confidence 00000 0000000 00000000 000 00111246999999999999999555
Q ss_pred hHHHH-HhhCCCcEEEEEcCCCcccc-cCchHHHHHHHHHHHhhc
Q 022960 229 DALEF-DKFIPNHKLHIIEGADHEFT-SHQDELASLVIQFIKANY 271 (289)
Q Consensus 229 ~~~~~-~~~~~~~~~~~~~~~gH~~~-~~~~~~~~~i~~fl~~~~ 271 (289)
....+ .+..+++++++++++||+++ ++++++++.|.+|+++..
T Consensus 246 ~~~~~~~~~~~~~~~~~i~~~gH~~~~e~p~~v~~~i~~fl~~~~ 290 (295)
T PRK03592 246 AIRDWCRSWPNQLEITVFGAGLHFAQEDSPEEIGAAIAAWLRRLR 290 (295)
T ss_pred HHHHHHHHhhhhcceeeccCcchhhhhcCHHHHHHHHHHHHHHhc
Confidence 55444 55678899999999999976 778899999999998654
No 10
>KOG1455 consensus Lysophospholipase [Lipid transport and metabolism]
Probab=100.00 E-value=5.6e-31 Score=194.90 Aligned_cols=250 Identities=18% Similarity=0.277 Sum_probs=176.7
Q ss_pred ccceeeEEeeCCCCceEEEEEeec----CCCcEEEEEcCCCCCCCCcchHHHHHHHHHcCccEEEEccccCCCCCCCc-c
Q 022960 19 VVQRRRVVIPNSHGEKLVGILHET----GSKQLVIVCHGFQSTKDRIPMVNLAAALEREGISAFRFDFSGNGESEGSF-L 93 (289)
Q Consensus 19 ~~~~~~~~~~~~~g~~l~~~~~~~----~~~~~iv~~hG~~~~~~~~~~~~~~~~l~~~G~~v~~~d~~G~G~s~~~~-~ 93 (289)
.+......+.+.+|.++.+..|.| ..+..|+++||++.... +.+..++..|+..||.|+++|++|||.|++.. .
T Consensus 24 ~~~~~~~~~~n~rG~~lft~~W~p~~~~~pr~lv~~~HG~g~~~s-~~~~~~a~~l~~~g~~v~a~D~~GhG~SdGl~~y 102 (313)
T KOG1455|consen 24 GVTYSESFFTNPRGAKLFTQSWLPLSGTEPRGLVFLCHGYGEHSS-WRYQSTAKRLAKSGFAVYAIDYEGHGRSDGLHAY 102 (313)
T ss_pred ccceeeeeEEcCCCCEeEEEecccCCCCCCceEEEEEcCCcccch-hhHHHHHHHHHhCCCeEEEeeccCCCcCCCCccc
Confidence 344556677888999999888866 35668999999999875 46899999999999999999999999999865 4
Q ss_pred ccchHHHHHHHHHHHHHHHhc---CCceEEEEEeChhHHHHHHHHHhCCC-ccEEEEeccCCcccccccccc-cchhHh-
Q 022960 94 YGNYRREAEDLRAIVQDFCAK---GRVITAIIGHSKGGNAVLLYASKYND-ISIVINISGRFNLKRGIEGRL-GLGYLQ- 167 (289)
Q Consensus 94 ~~~~~~~~~d~~~~i~~l~~~---~~~~~~l~G~S~Gg~~a~~~a~~~p~-v~~~v~~~~~~~~~~~~~~~~-~~~~~~- 167 (289)
..+++..++|+....+.++.+ ...+.+++||||||.+++.++.+.|+ .+++|+++|............ ....+.
T Consensus 103 i~~~d~~v~D~~~~~~~i~~~~e~~~lp~FL~GeSMGGAV~Ll~~~k~p~~w~G~ilvaPmc~i~~~~kp~p~v~~~l~~ 182 (313)
T KOG1455|consen 103 VPSFDLVVDDVISFFDSIKEREENKGLPRFLFGESMGGAVALLIALKDPNFWDGAILVAPMCKISEDTKPHPPVISILTL 182 (313)
T ss_pred CCcHHHHHHHHHHHHHHHhhccccCCCCeeeeecCcchHHHHHHHhhCCcccccceeeecccccCCccCCCcHHHHHHHH
Confidence 567888999999999987665 34478999999999999999999999 999999999776554432111 111110
Q ss_pred --hhhhcCcccccc-----------------cccccccc--cChhhhhhhhccchhhhhcccccCceEEEEEeCCCCccC
Q 022960 168 --RIKQNGFIDVRN-----------------KKGKLEYR--VTQESLMDRLSTDIHAACHMICQDCRVLTIHGTKDKMVP 226 (289)
Q Consensus 168 --~~~~~~~~~~~~-----------------~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~P~l~i~g~~D~~~~ 226 (289)
.+... +..... ......+. .......+.++..........++++|.+++||++|.++.
T Consensus 183 l~~liP~-wk~vp~~d~~~~~~kdp~~r~~~~~npl~y~g~pRl~T~~ElLr~~~~le~~l~~vtvPflilHG~dD~VTD 261 (313)
T KOG1455|consen 183 LSKLIPT-WKIVPTKDIIDVAFKDPEKRKILRSDPLCYTGKPRLKTAYELLRVTADLEKNLNEVTVPFLILHGTDDKVTD 261 (313)
T ss_pred HHHhCCc-eeecCCccccccccCCHHHHHHhhcCCceecCCccHHHHHHHHHHHHHHHHhcccccccEEEEecCCCcccC
Confidence 00000 000000 00000000 011122222222222222222569999999999999999
Q ss_pred hhhHHHHHhhCC--CcEEEEEcCCCccccc-Cc----hHHHHHHHHHHHhh
Q 022960 227 AEDALEFDKFIP--NHKLHIIEGADHEFTS-HQ----DELASLVIQFIKAN 270 (289)
Q Consensus 227 ~~~~~~~~~~~~--~~~~~~~~~~gH~~~~-~~----~~~~~~i~~fl~~~ 270 (289)
++.++.+++..+ ++++..|||.-|.++. ++ +.+...|.+||+++
T Consensus 262 p~~Sk~Lye~A~S~DKTlKlYpGm~H~Ll~gE~~en~e~Vf~DI~~Wl~~r 312 (313)
T KOG1455|consen 262 PKVSKELYEKASSSDKTLKLYPGMWHSLLSGEPDENVEIVFGDIISWLDER 312 (313)
T ss_pred cHHHHHHHHhccCCCCceeccccHHHHhhcCCCchhHHHHHHHHHHHHHhc
Confidence 999999999875 5899999999999762 33 45788899999865
No 11
>PRK13604 luxD acyl transferase; Provisional
Probab=100.00 E-value=5.2e-31 Score=200.65 Aligned_cols=225 Identities=18% Similarity=0.212 Sum_probs=159.1
Q ss_pred eeEEeeCCCCceEEEEEeecC-----CCcEEEEEcCCCCCCCCcchHHHHHHHHHcCccEEEEccccC-CCCCCCccccc
Q 022960 23 RRVVIPNSHGEKLVGILHETG-----SKQLVIVCHGFQSTKDRIPMVNLAAALEREGISAFRFDFSGN-GESEGSFLYGN 96 (289)
Q Consensus 23 ~~~~~~~~~g~~l~~~~~~~~-----~~~~iv~~hG~~~~~~~~~~~~~~~~l~~~G~~v~~~d~~G~-G~s~~~~~~~~ 96 (289)
.+..+.+.+|.+|.+|+..|+ +.++||++||+++... .+..+++.|+++||.|+.+|+||+ |.|++.....+
T Consensus 10 ~~~~~~~~dG~~L~Gwl~~P~~~~~~~~~~vIi~HGf~~~~~--~~~~~A~~La~~G~~vLrfD~rg~~GeS~G~~~~~t 87 (307)
T PRK13604 10 IDHVICLENGQSIRVWETLPKENSPKKNNTILIASGFARRMD--HFAGLAEYLSSNGFHVIRYDSLHHVGLSSGTIDEFT 87 (307)
T ss_pred hhheEEcCCCCEEEEEEEcCcccCCCCCCEEEEeCCCCCChH--HHHHHHHHHHHCCCEEEEecCCCCCCCCCCccccCc
Confidence 455677889999999998874 4579999999999874 389999999999999999999988 99988775555
Q ss_pred hHHHHHHHHHHHHHHHhcCCceEEEEEeChhHHHHHHHHHhCCCccEEEEeccCCcccccccccccchhHhhhhhcCccc
Q 022960 97 YRREAEDLRAIVQDFCAKGRVITAIIGHSKGGNAVLLYASKYNDISIVINISGRFNLKRGIEGRLGLGYLQRIKQNGFID 176 (289)
Q Consensus 97 ~~~~~~d~~~~i~~l~~~~~~~~~l~G~S~Gg~~a~~~a~~~p~v~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (289)
......|+.++++++++++.+++.|+||||||.+|+..|.. ++++++|+.+|..++...+.......+. ..+...
T Consensus 88 ~s~g~~Dl~aaid~lk~~~~~~I~LiG~SmGgava~~~A~~-~~v~~lI~~sp~~~l~d~l~~~~~~~~~----~~p~~~ 162 (307)
T PRK13604 88 MSIGKNSLLTVVDWLNTRGINNLGLIAASLSARIAYEVINE-IDLSFLITAVGVVNLRDTLERALGYDYL----SLPIDE 162 (307)
T ss_pred ccccHHHHHHHHHHHHhcCCCceEEEEECHHHHHHHHHhcC-CCCCEEEEcCCcccHHHHHHHhhhcccc----cCcccc
Confidence 55568999999999988877899999999999999776653 3499999999987765333221111100 000000
Q ss_pred ccccccccccccC-hhhhhhhhccchh------hhhcccccCceEEEEEeCCCCccChhhHHHHHhhCC--CcEEEEEcC
Q 022960 177 VRNKKGKLEYRVT-QESLMDRLSTDIH------AACHMICQDCRVLTIHGTKDKMVPAEDALEFDKFIP--NHKLHIIEG 247 (289)
Q Consensus 177 ~~~~~~~~~~~~~-~~~~~~~~~~~~~------~~~~~~~~~~P~l~i~g~~D~~~~~~~~~~~~~~~~--~~~~~~~~~ 247 (289)
............. ...+...+..++. .... .+++|+|+|||++|.+||.+.++.+++.++ +++++.++|
T Consensus 163 lp~~~d~~g~~l~~~~f~~~~~~~~~~~~~s~i~~~~--~l~~PvLiIHG~~D~lVp~~~s~~l~e~~~s~~kkl~~i~G 240 (307)
T PRK13604 163 LPEDLDFEGHNLGSEVFVTDCFKHGWDTLDSTINKMK--GLDIPFIAFTANNDSWVKQSEVIDLLDSIRSEQCKLYSLIG 240 (307)
T ss_pred cccccccccccccHHHHHHHHHhcCccccccHHHHHh--hcCCCEEEEEcCCCCccCHHHHHHHHHHhccCCcEEEEeCC
Confidence 0000000001111 1111111111111 1122 347999999999999999999999999875 689999999
Q ss_pred CCcccccCc
Q 022960 248 ADHEFTSHQ 256 (289)
Q Consensus 248 ~gH~~~~~~ 256 (289)
++|.+.+..
T Consensus 241 a~H~l~~~~ 249 (307)
T PRK13604 241 SSHDLGENL 249 (307)
T ss_pred CccccCcch
Confidence 999986543
No 12
>PLN02965 Probable pheophorbidase
Probab=100.00 E-value=3.5e-31 Score=204.21 Aligned_cols=218 Identities=21% Similarity=0.219 Sum_probs=148.6
Q ss_pred EEEEEcCCCCCCCCcchHHHHHHHHHcCccEEEEccccCCCCCCCcc-ccchHHHHHHHHHHHHHHHhcCC-ceEEEEEe
Q 022960 47 LVIVCHGFQSTKDRIPMVNLAAALEREGISAFRFDFSGNGESEGSFL-YGNYRREAEDLRAIVQDFCAKGR-VITAIIGH 124 (289)
Q Consensus 47 ~iv~~hG~~~~~~~~~~~~~~~~l~~~G~~v~~~d~~G~G~s~~~~~-~~~~~~~~~d~~~~i~~l~~~~~-~~~~l~G~ 124 (289)
+|||+||++.+.. .|..+++.|.+.||+|+++|+||||.|..... ..+++.+++|+.++++.+ +. ++++++||
T Consensus 5 ~vvllHG~~~~~~--~w~~~~~~L~~~~~~via~Dl~G~G~S~~~~~~~~~~~~~a~dl~~~l~~l---~~~~~~~lvGh 79 (255)
T PLN02965 5 HFVFVHGASHGAW--CWYKLATLLDAAGFKSTCVDLTGAGISLTDSNTVSSSDQYNRPLFALLSDL---PPDHKVILVGH 79 (255)
T ss_pred EEEEECCCCCCcC--cHHHHHHHHhhCCceEEEecCCcCCCCCCCccccCCHHHHHHHHHHHHHhc---CCCCCEEEEec
Confidence 5999999998874 59999999988899999999999999976543 456788899999999987 55 48999999
Q ss_pred ChhHHHHHHHHHhCCC-ccEEEEeccCCcccccc-cccccchhHhh---hhhcCcccccccc-------c-c---ccccc
Q 022960 125 SKGGNAVLLYASKYND-ISIVINISGRFNLKRGI-EGRLGLGYLQR---IKQNGFIDVRNKK-------G-K---LEYRV 188 (289)
Q Consensus 125 S~Gg~~a~~~a~~~p~-v~~~v~~~~~~~~~~~~-~~~~~~~~~~~---~~~~~~~~~~~~~-------~-~---~~~~~ 188 (289)
||||.+++.++.++|+ |+++|++++........ ..... ..... .....+....... . . ..+..
T Consensus 80 SmGG~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (255)
T PLN02965 80 SIGGGSVTEALCKFTDKISMAIYVAAAMVKPGSIISPRLK-NVMEGTEKIWDYTFGEGPDKPPTGIMMKPEFVRHYYYNQ 158 (255)
T ss_pred CcchHHHHHHHHhCchheeEEEEEccccCCCCCCccHHHH-hhhhccccceeeeeccCCCCCcchhhcCHHHHHHHHhcC
Confidence 9999999999999999 99999998753211000 00000 00000 0000000000000 0 0 00000
Q ss_pred -Chh--hh-hhhhcc-------chh-hhhcccccCceEEEEEeCCCCccChhhHHHHHhhCCCcEEEEEcCCCcccc-cC
Q 022960 189 -TQE--SL-MDRLST-------DIH-AACHMICQDCRVLTIHGTKDKMVPAEDALEFDKFIPNHKLHIIEGADHEFT-SH 255 (289)
Q Consensus 189 -~~~--~~-~~~~~~-------~~~-~~~~~~~~~~P~l~i~g~~D~~~~~~~~~~~~~~~~~~~~~~~~~~gH~~~-~~ 255 (289)
... .. ...+.. ... .......+++|+++++|++|.++|++..+.+.+.++++++++++++||+++ ++
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~vP~lvi~g~~D~~~~~~~~~~~~~~~~~a~~~~i~~~GH~~~~e~ 238 (255)
T PLN02965 159 SPLEDYTLSSKLLRPAPVRAFQDLDKLPPNPEAEKVPRVYIKTAKDNLFDPVRQDVMVENWPPAQTYVLEDSDHSAFFSV 238 (255)
T ss_pred CCHHHHHHHHHhcCCCCCcchhhhhhccchhhcCCCCEEEEEcCCCCCCCHHHHHHHHHhCCcceEEEecCCCCchhhcC
Confidence 000 00 000000 000 000111469999999999999999999999999999999999999999966 77
Q ss_pred chHHHHHHHHHHHhh
Q 022960 256 QDELASLVIQFIKAN 270 (289)
Q Consensus 256 ~~~~~~~i~~fl~~~ 270 (289)
++++++.|.+|++..
T Consensus 239 p~~v~~~l~~~~~~~ 253 (255)
T PLN02965 239 PTTLFQYLLQAVSSL 253 (255)
T ss_pred HHHHHHHHHHHHHHh
Confidence 899999999998764
No 13
>PRK06489 hypothetical protein; Provisional
Probab=99.98 E-value=5e-31 Score=212.68 Aligned_cols=250 Identities=16% Similarity=0.172 Sum_probs=159.2
Q ss_pred cCCcccceeeEEeeC---CCCceEEEEEeecCC-------CcEEEEEcCCCCCCCCcchH--HHHHHH-------HHcCc
Q 022960 15 QQDPVVQRRRVVIPN---SHGEKLVGILHETGS-------KQLVIVCHGFQSTKDRIPMV--NLAAAL-------EREGI 75 (289)
Q Consensus 15 ~~~~~~~~~~~~~~~---~~g~~l~~~~~~~~~-------~~~iv~~hG~~~~~~~~~~~--~~~~~l-------~~~G~ 75 (289)
+.+.....+++.+.+ .+|.+++|...+.++ +|+|||+||++++... |. .+.+.| ...+|
T Consensus 29 ~~~~~~~~~~~~~~~~~~~~g~~i~y~~~G~~~~~~~~~~gpplvllHG~~~~~~~--~~~~~~~~~l~~~~~~l~~~~~ 106 (360)
T PRK06489 29 PQEGDWVARDFTFHSGETLPELRLHYTTLGTPHRNADGEIDNAVLVLHGTGGSGKS--FLSPTFAGELFGPGQPLDASKY 106 (360)
T ss_pred CccCceeccceeccCCCCcCCceEEEEecCCCCcccccCCCCeEEEeCCCCCchhh--hccchhHHHhcCCCCcccccCC
Confidence 444555666677766 466777766555444 7899999999998754 43 455554 13469
Q ss_pred cEEEEccccCCCCCCCcc-------ccchHHHHHHHHHHH-HHHHhcCCceEE-EEEeChhHHHHHHHHHhCCC-ccEEE
Q 022960 76 SAFRFDFSGNGESEGSFL-------YGNYRREAEDLRAIV-QDFCAKGRVITA-IIGHSKGGNAVLLYASKYND-ISIVI 145 (289)
Q Consensus 76 ~v~~~d~~G~G~s~~~~~-------~~~~~~~~~d~~~~i-~~l~~~~~~~~~-l~G~S~Gg~~a~~~a~~~p~-v~~~v 145 (289)
+|+++|+||||.|+.+.. .+++++.++++.+++ +.+ ++++++ |+||||||.+|+.+|.++|+ |+++|
T Consensus 107 ~Via~Dl~GhG~S~~p~~~~~~~~~~~~~~~~a~~~~~~l~~~l---gi~~~~~lvG~SmGG~vAl~~A~~~P~~V~~LV 183 (360)
T PRK06489 107 FIILPDGIGHGKSSKPSDGLRAAFPRYDYDDMVEAQYRLVTEGL---GVKHLRLILGTSMGGMHAWMWGEKYPDFMDALM 183 (360)
T ss_pred EEEEeCCCCCCCCCCCCcCCCCCCCcccHHHHHHHHHHHHHHhc---CCCceeEEEEECHHHHHHHHHHHhCchhhheee
Confidence 999999999999976432 246677777776654 556 777875 89999999999999999999 99999
Q ss_pred EeccCCcccccccccccchhHhhhhhc------Cccc----------------------c--ccccccc---c-------
Q 022960 146 NISGRFNLKRGIEGRLGLGYLQRIKQN------GFID----------------------V--RNKKGKL---E------- 185 (289)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~----------------------~--~~~~~~~---~------- 185 (289)
++++...................+... .+.. . ....... .
T Consensus 184 Li~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (360)
T PRK06489 184 PMASQPTEMSGRNWMWRRMLIESIRNDPAWNNGNYTTQPPSLKRANPMFAIATSGGTLAYQAQAPTRAAADKLVDERLAA 263 (360)
T ss_pred eeccCcccccHHHHHHHHHHHHHHHhCCCCCCCCCCCCHHHHHHHHHHHHHHHhCCHHHHHHhcCChHHHHHHHHHHHHh
Confidence 998743211000000000000000000 0000 0 0000000 0
Q ss_pred -cccChhhhhhhhc----cchhhhhcccccCceEEEEEeCCCCccChhhH--HHHHhhCCCcEEEEEcCC----Cccccc
Q 022960 186 -YRVTQESLMDRLS----TDIHAACHMICQDCRVLTIHGTKDKMVPAEDA--LEFDKFIPNHKLHIIEGA----DHEFTS 254 (289)
Q Consensus 186 -~~~~~~~~~~~~~----~~~~~~~~~~~~~~P~l~i~g~~D~~~~~~~~--~~~~~~~~~~~~~~~~~~----gH~~~~ 254 (289)
.......+...+. .+... ...+|++|+|+|+|++|.++|++.+ +.+.+.+|++++++++++ ||.+++
T Consensus 264 ~~~~~~~~~~~~~~~~~~~d~~~--~L~~I~~PvLvI~G~~D~~~p~~~~~~~~la~~ip~a~l~~i~~a~~~~GH~~~e 341 (360)
T PRK06489 264 PVTADANDFLYQWDSSRDYNPSP--DLEKIKAPVLAINSADDERNPPETGVMEAALKRVKHGRLVLIPASPETRGHGTTG 341 (360)
T ss_pred hhhcCHHHHHHHHHHhhccChHH--HHHhCCCCEEEEecCCCcccChhhHHHHHHHHhCcCCeEEEECCCCCCCCccccc
Confidence 0000000000000 01111 1125699999999999999998875 789999999999999996 999888
Q ss_pred CchHHHHHHHHHHHhhc
Q 022960 255 HQDELASLVIQFIKANY 271 (289)
Q Consensus 255 ~~~~~~~~i~~fl~~~~ 271 (289)
+++++++.|.+||++..
T Consensus 342 ~P~~~~~~i~~FL~~~~ 358 (360)
T PRK06489 342 SAKFWKAYLAEFLAQVP 358 (360)
T ss_pred CHHHHHHHHHHHHHhcc
Confidence 88999999999998653
No 14
>TIGR03343 biphenyl_bphD 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase. Members of this family are 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase, or HOPD hydrolase, the BphD protein of biphenyl degradation. BphD acts on the product of ring meta-cleavage by BphC. Many species carrying bphC and bphD are capable of degrading polychlorinated biphenyls as well as biphenyl itself.
Probab=99.98 E-value=6.3e-31 Score=206.31 Aligned_cols=225 Identities=19% Similarity=0.220 Sum_probs=145.6
Q ss_pred EeecCCCcEEEEEcCCCCCCCCcchHH---HHHHHHHcCccEEEEccccCCCCCCCccc-cchHHHHHHHHHHHHHHHhc
Q 022960 39 LHETGSKQLVIVCHGFQSTKDRIPMVN---LAAALEREGISAFRFDFSGNGESEGSFLY-GNYRREAEDLRAIVQDFCAK 114 (289)
Q Consensus 39 ~~~~~~~~~iv~~hG~~~~~~~~~~~~---~~~~l~~~G~~v~~~d~~G~G~s~~~~~~-~~~~~~~~d~~~~i~~l~~~ 114 (289)
|...+++|+||++||++++... |.. ....|.+.||+|+++|+||||.|+..... ......++|+.++++.+
T Consensus 24 y~~~g~~~~ivllHG~~~~~~~--~~~~~~~~~~l~~~~~~vi~~D~~G~G~S~~~~~~~~~~~~~~~~l~~~l~~l--- 98 (282)
T TIGR03343 24 YNEAGNGEAVIMLHGGGPGAGG--WSNYYRNIGPFVDAGYRVILKDSPGFNKSDAVVMDEQRGLVNARAVKGLMDAL--- 98 (282)
T ss_pred EEecCCCCeEEEECCCCCchhh--HHHHHHHHHHHHhCCCEEEEECCCCCCCCCCCcCcccccchhHHHHHHHHHHc---
Confidence 4455677899999999987754 443 34566667899999999999999865321 11124578888888887
Q ss_pred CCceEEEEEeChhHHHHHHHHHhCCC-ccEEEEeccCCccccccccc---ccchhHhh-----------hhhcCcccccc
Q 022960 115 GRVITAIIGHSKGGNAVLLYASKYND-ISIVINISGRFNLKRGIEGR---LGLGYLQR-----------IKQNGFIDVRN 179 (289)
Q Consensus 115 ~~~~~~l~G~S~Gg~~a~~~a~~~p~-v~~~v~~~~~~~~~~~~~~~---~~~~~~~~-----------~~~~~~~~~~~ 179 (289)
+.++++++||||||.+++.++.++|+ ++++|++++........... ....+... ...........
T Consensus 99 ~~~~~~lvG~S~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (282)
T TIGR03343 99 DIEKAHLVGNSMGGATALNFALEYPDRIGKLILMGPGGLGPSLFAPMPMEGIKLLFKLYAEPSYETLKQMLNVFLFDQSL 178 (282)
T ss_pred CCCCeeEEEECchHHHHHHHHHhChHhhceEEEECCCCCCccccccCchHHHHHHHHHhcCCCHHHHHHHHhhCccCccc
Confidence 78899999999999999999999998 99999998753211100000 00000000 00000000000
Q ss_pred cccc---ccc---ccChhhhhhhhc-------cchhhhhcccccCceEEEEEeCCCCccChhhHHHHHhhCCCcEEEEEc
Q 022960 180 KKGK---LEY---RVTQESLMDRLS-------TDIHAACHMICQDCRVLTIHGTKDKMVPAEDALEFDKFIPNHKLHIIE 246 (289)
Q Consensus 180 ~~~~---~~~---~~~~~~~~~~~~-------~~~~~~~~~~~~~~P~l~i~g~~D~~~~~~~~~~~~~~~~~~~~~~~~ 246 (289)
.... ..+ ............ ..........++++|+|+++|++|.+++++.++.+++.++++++++++
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~Pvlli~G~~D~~v~~~~~~~~~~~~~~~~~~~i~ 258 (282)
T TIGR03343 179 ITEELLQGRWENIQRQPEHLKNFLISSQKAPLSTWDVTARLGEIKAKTLVTWGRDDRFVPLDHGLKLLWNMPDAQLHVFS 258 (282)
T ss_pred CcHHHHHhHHHHhhcCHHHHHHHHHhccccccccchHHHHHhhCCCCEEEEEccCCCcCCchhHHHHHHhCCCCEEEEeC
Confidence 0000 000 000000000000 000001112256899999999999999999999999999999999999
Q ss_pred CCCcccc-cCchHHHHHHHHHHH
Q 022960 247 GADHEFT-SHQDELASLVIQFIK 268 (289)
Q Consensus 247 ~~gH~~~-~~~~~~~~~i~~fl~ 268 (289)
++||+++ ++++++++.|.+||+
T Consensus 259 ~agH~~~~e~p~~~~~~i~~fl~ 281 (282)
T TIGR03343 259 RCGHWAQWEHADAFNRLVIDFLR 281 (282)
T ss_pred CCCcCCcccCHHHHHHHHHHHhh
Confidence 9999966 667889999999986
No 15
>TIGR03056 bchO_mg_che_rel putative magnesium chelatase accessory protein. Members of this family belong to the alpha/beta fold family hydrolases (PFAM model pfam00561). Members are found in bacterial genomes if and only if they encoded for anoxygenic photosynthetic systems similar to that of Rhodobacter capsulatus and other alpha-Proteobacteria. Members often are encoded in the same operon as subunits of the protoporphyrin IX magnesium chelatase, and were once designated BchO. No literature supports a role as an actual subunit of magnesium chelatase, but an accessory role is possible, as suggested by placement by its probable hydrolase activity.
Probab=99.98 E-value=1.7e-30 Score=203.54 Aligned_cols=234 Identities=20% Similarity=0.221 Sum_probs=158.3
Q ss_pred CCCCceEEEEEeecCCCcEEEEEcCCCCCCCCcchHHHHHHHHHcCccEEEEccccCCCCCCCcc-ccchHHHHHHHHHH
Q 022960 29 NSHGEKLVGILHETGSKQLVIVCHGFQSTKDRIPMVNLAAALEREGISAFRFDFSGNGESEGSFL-YGNYRREAEDLRAI 107 (289)
Q Consensus 29 ~~~g~~l~~~~~~~~~~~~iv~~hG~~~~~~~~~~~~~~~~l~~~G~~v~~~d~~G~G~s~~~~~-~~~~~~~~~d~~~~ 107 (289)
..+|.++++.-.++..+|+||++||++++... |..+.+.|++ +|+|+++|+||||.|..+.. ..++..+++|+.++
T Consensus 12 ~~~~~~~~~~~~g~~~~~~vv~~hG~~~~~~~--~~~~~~~l~~-~~~vi~~D~~G~G~S~~~~~~~~~~~~~~~~l~~~ 88 (278)
T TIGR03056 12 TVGPFHWHVQDMGPTAGPLLLLLHGTGASTHS--WRDLMPPLAR-SFRVVAPDLPGHGFTRAPFRFRFTLPSMAEDLSAL 88 (278)
T ss_pred eECCEEEEEEecCCCCCCeEEEEcCCCCCHHH--HHHHHHHHhh-CcEEEeecCCCCCCCCCccccCCCHHHHHHHHHHH
Confidence 44677777655555467899999999998854 8899999987 59999999999999986554 56788889999999
Q ss_pred HHHHHhcCCceEEEEEeChhHHHHHHHHHhCCC-ccEEEEeccCCcccccccccccchhH-------------hhhhh--
Q 022960 108 VQDFCAKGRVITAIIGHSKGGNAVLLYASKYND-ISIVINISGRFNLKRGIEGRLGLGYL-------------QRIKQ-- 171 (289)
Q Consensus 108 i~~l~~~~~~~~~l~G~S~Gg~~a~~~a~~~p~-v~~~v~~~~~~~~~~~~~~~~~~~~~-------------~~~~~-- 171 (289)
++.+ +.++++|+||||||.+++.++.++|+ ++++|++++................. .....
T Consensus 89 i~~~---~~~~~~lvG~S~Gg~~a~~~a~~~p~~v~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (278)
T TIGR03056 89 CAAE---GLSPDGVIGHSAGAAIALRLALDGPVTPRMVVGINAALMPFEGMAGTLFPYMARVLACNPFTPPMMSRGAADQ 165 (278)
T ss_pred HHHc---CCCCceEEEECccHHHHHHHHHhCCcccceEEEEcCcccccccccccccchhhHhhhhcccchHHHHhhcccC
Confidence 8876 66789999999999999999999999 99999998765322111000000000 00000
Q ss_pred cCcccccccccccccccChhhhh-------------hhhcc-chh-hhhcccccCceEEEEEeCCCCccChhhHHHHHhh
Q 022960 172 NGFIDVRNKKGKLEYRVTQESLM-------------DRLST-DIH-AACHMICQDCRVLTIHGTKDKMVPAEDALEFDKF 236 (289)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~-~~~-~~~~~~~~~~P~l~i~g~~D~~~~~~~~~~~~~~ 236 (289)
....................... ..+.. ... ......++++|+++++|++|.++|.+..+.+.+.
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~P~lii~g~~D~~vp~~~~~~~~~~ 245 (278)
T TIGR03056 166 QRVERLIRDTGSLLDKAGMTYYGRLIRSPAHVDGALSMMAQWDLAPLNRDLPRITIPLHLIAGEEDKAVPPDESKRAATR 245 (278)
T ss_pred cchhHHhhccccccccchhhHHHHhhcCchhhhHHHHHhhcccccchhhhcccCCCCEEEEEeCCCcccCHHHHHHHHHh
Confidence 00000000000000000000000 00000 000 0011124689999999999999999999999999
Q ss_pred CCCcEEEEEcCCCcccc-cCchHHHHHHHHHHH
Q 022960 237 IPNHKLHIIEGADHEFT-SHQDELASLVIQFIK 268 (289)
Q Consensus 237 ~~~~~~~~~~~~gH~~~-~~~~~~~~~i~~fl~ 268 (289)
+++++++.++++||+++ +.++++++.|.+|++
T Consensus 246 ~~~~~~~~~~~~gH~~~~e~p~~~~~~i~~f~~ 278 (278)
T TIGR03056 246 VPTATLHVVPGGGHLVHEEQADGVVGLILQAAE 278 (278)
T ss_pred ccCCeEEEECCCCCcccccCHHHHHHHHHHHhC
Confidence 99999999999999966 677899999999984
No 16
>PRK10673 acyl-CoA esterase; Provisional
Probab=99.97 E-value=1.2e-30 Score=201.75 Aligned_cols=218 Identities=20% Similarity=0.227 Sum_probs=149.5
Q ss_pred CCCcEEEEEcCCCCCCCCcchHHHHHHHHHcCccEEEEccccCCCCCCCccccchHHHHHHHHHHHHHHHhcCCceEEEE
Q 022960 43 GSKQLVIVCHGFQSTKDRIPMVNLAAALEREGISAFRFDFSGNGESEGSFLYGNYRREAEDLRAIVQDFCAKGRVITAII 122 (289)
Q Consensus 43 ~~~~~iv~~hG~~~~~~~~~~~~~~~~l~~~G~~v~~~d~~G~G~s~~~~~~~~~~~~~~d~~~~i~~l~~~~~~~~~l~ 122 (289)
+++|+||++||++++... |..++..|.+ +|+|+++|+||||.|.... ..++.++++|+.++++++ +.++++|+
T Consensus 14 ~~~~~iv~lhG~~~~~~~--~~~~~~~l~~-~~~vi~~D~~G~G~s~~~~-~~~~~~~~~d~~~~l~~l---~~~~~~lv 86 (255)
T PRK10673 14 HNNSPIVLVHGLFGSLDN--LGVLARDLVN-DHDIIQVDMRNHGLSPRDP-VMNYPAMAQDLLDTLDAL---QIEKATFI 86 (255)
T ss_pred CCCCCEEEECCCCCchhH--HHHHHHHHhh-CCeEEEECCCCCCCCCCCC-CCCHHHHHHHHHHHHHHc---CCCceEEE
Confidence 467899999999998854 8899999987 4999999999999998654 357888999999999988 77789999
Q ss_pred EeChhHHHHHHHHHhCCC-ccEEEEeccCCcccc-cccccccchhHhhhhhcCcc----------ccccc----------
Q 022960 123 GHSKGGNAVLLYASKYND-ISIVINISGRFNLKR-GIEGRLGLGYLQRIKQNGFI----------DVRNK---------- 180 (289)
Q Consensus 123 G~S~Gg~~a~~~a~~~p~-v~~~v~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~----------~~~~~---------- 180 (289)
||||||.+++.+|.++|+ |+++|++++...... ......... .......... .....
T Consensus 87 GhS~Gg~va~~~a~~~~~~v~~lvli~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (255)
T PRK10673 87 GHSMGGKAVMALTALAPDRIDKLVAIDIAPVDYHVRRHDEIFAA-INAVSEAGATTRQQAAAIMRQHLNEEGVIQFLLKS 165 (255)
T ss_pred EECHHHHHHHHHHHhCHhhcceEEEEecCCCCccchhhHHHHHH-HHHhhhcccccHHHHHHHHHHhcCCHHHHHHHHhc
Confidence 999999999999999998 999999865321110 000000000 0000000000 00000
Q ss_pred ccccccccChhhhhhhhccchhhhhcccccCceEEEEEeCCCCccChhhHHHHHhhCCCcEEEEEcCCCcccc-cCchHH
Q 022960 181 KGKLEYRVTQESLMDRLSTDIHAACHMICQDCRVLTIHGTKDKMVPAEDALEFDKFIPNHKLHIIEGADHEFT-SHQDEL 259 (289)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~i~g~~D~~~~~~~~~~~~~~~~~~~~~~~~~~gH~~~-~~~~~~ 259 (289)
.....+............. .........+++|+|+|+|++|..++.+..+.+.+.++++++.+++++||+++ ++++++
T Consensus 166 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~P~l~i~G~~D~~~~~~~~~~~~~~~~~~~~~~~~~~gH~~~~~~p~~~ 244 (255)
T PRK10673 166 FVDGEWRFNVPVLWDQYPH-IVGWEKIPAWPHPALFIRGGNSPYVTEAYRDDLLAQFPQARAHVIAGAGHWVHAEKPDAV 244 (255)
T ss_pred CCcceeEeeHHHHHHhHHH-HhCCcccCCCCCCeEEEECCCCCCCCHHHHHHHHHhCCCcEEEEeCCCCCeeeccCHHHH
Confidence 0000000011100000000 00000112458999999999999999999999999999999999999999966 567889
Q ss_pred HHHHHHHHHh
Q 022960 260 ASLVIQFIKA 269 (289)
Q Consensus 260 ~~~i~~fl~~ 269 (289)
++.|.+||++
T Consensus 245 ~~~l~~fl~~ 254 (255)
T PRK10673 245 LRAIRRYLND 254 (255)
T ss_pred HHHHHHHHhc
Confidence 9999999975
No 17
>COG1647 Esterase/lipase [General function prediction only]
Probab=99.97 E-value=5e-31 Score=185.72 Aligned_cols=215 Identities=24% Similarity=0.339 Sum_probs=158.0
Q ss_pred cEEEEEcCCCCCCCCcchHHHHHHHHHcCccEEEEccccCCCCCCCccccchHHHHHHHHHHHHHHHhcCCceEEEEEeC
Q 022960 46 QLVIVCHGFQSTKDRIPMVNLAAALEREGISAFRFDFSGNGESEGSFLYGNYRREAEDLRAIVQDFCAKGRVITAIIGHS 125 (289)
Q Consensus 46 ~~iv~~hG~~~~~~~~~~~~~~~~l~~~G~~v~~~d~~G~G~s~~~~~~~~~~~~~~d~~~~i~~l~~~~~~~~~l~G~S 125 (289)
.+|+++||+.|+.+. .+.+.+.|.++||.|.++.+||||......-..++.+|.+|+.+..++|.+.+.+.|.++|.|
T Consensus 16 ~AVLllHGFTGt~~D--vr~Lgr~L~e~GyTv~aP~ypGHG~~~e~fl~t~~~DW~~~v~d~Y~~L~~~gy~eI~v~GlS 93 (243)
T COG1647 16 RAVLLLHGFTGTPRD--VRMLGRYLNENGYTVYAPRYPGHGTLPEDFLKTTPRDWWEDVEDGYRDLKEAGYDEIAVVGLS 93 (243)
T ss_pred EEEEEEeccCCCcHH--HHHHHHHHHHCCceEecCCCCCCCCCHHHHhcCCHHHHHHHHHHHHHHHHHcCCCeEEEEeec
Confidence 789999999999976 999999999999999999999999998777778889999999999999998899999999999
Q ss_pred hhHHHHHHHHHhCCCccEEEEeccCCcccccccccccchhHhhhhhcCcccccccc----cccccc----cChhhhhhhh
Q 022960 126 KGGNAVLLYASKYNDISIVINISGRFNLKRGIEGRLGLGYLQRIKQNGFIDVRNKK----GKLEYR----VTQESLMDRL 197 (289)
Q Consensus 126 ~Gg~~a~~~a~~~p~v~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~----~~~~~~~~~~ 197 (289)
|||.+++.+|..+| ++++|.+|++......- ..-..+...+............ ....+. .....+.. +
T Consensus 94 mGGv~alkla~~~p-~K~iv~m~a~~~~k~~~--~iie~~l~y~~~~kk~e~k~~e~~~~e~~~~~~~~~~~~~~~~~-~ 169 (243)
T COG1647 94 MGGVFALKLAYHYP-PKKIVPMCAPVNVKSWR--IIIEGLLEYFRNAKKYEGKDQEQIDKEMKSYKDTPMTTTAQLKK-L 169 (243)
T ss_pred chhHHHHHHHhhCC-ccceeeecCCcccccch--hhhHHHHHHHHHhhhccCCCHHHHHHHHHHhhcchHHHHHHHHH-H
Confidence 99999999999998 99999999876533211 1111112111111000000000 000000 00011111 1
Q ss_pred ccchhhhhcccccCceEEEEEeCCCCccChhhHHHHHhhCC--CcEEEEEcCCCccccc--CchHHHHHHHHHHH
Q 022960 198 STDIHAACHMICQDCRVLTIHGTKDKMVPAEDALEFDKFIP--NHKLHIIEGADHEFTS--HQDELASLVIQFIK 268 (289)
Q Consensus 198 ~~~~~~~~~~~~~~~P~l~i~g~~D~~~~~~~~~~~~~~~~--~~~~~~~~~~gH~~~~--~~~~~~~~i~~fl~ 268 (289)
..+...... .|..|++++.|.+|+.+|.+.+..+++... +.++.+++++||.+.. +.+++.+.+..||+
T Consensus 170 i~~~~~~~~--~I~~pt~vvq~~~D~mv~~~sA~~Iy~~v~s~~KeL~~~e~SgHVIt~D~Erd~v~e~V~~FL~ 242 (243)
T COG1647 170 IKDARRSLD--KIYSPTLVVQGRQDEMVPAESANFIYDHVESDDKELKWLEGSGHVITLDKERDQVEEDVITFLE 242 (243)
T ss_pred HHHHHhhhh--hcccchhheecccCCCCCHHHHHHHHHhccCCcceeEEEccCCceeecchhHHHHHHHHHHHhh
Confidence 111122222 458999999999999999999999998874 4799999999999763 45789999999996
No 18
>PLN02679 hydrolase, alpha/beta fold family protein
Probab=99.97 E-value=3.6e-30 Score=207.25 Aligned_cols=232 Identities=16% Similarity=0.220 Sum_probs=151.9
Q ss_pred Cc-eEEEEEeecC----CCcEEEEEcCCCCCCCCcchHHHHHHHHHcCccEEEEccccCCCCCCCc-cccchHHHHHHHH
Q 022960 32 GE-KLVGILHETG----SKQLVIVCHGFQSTKDRIPMVNLAAALEREGISAFRFDFSGNGESEGSF-LYGNYRREAEDLR 105 (289)
Q Consensus 32 g~-~l~~~~~~~~----~~~~iv~~hG~~~~~~~~~~~~~~~~l~~~G~~v~~~d~~G~G~s~~~~-~~~~~~~~~~d~~ 105 (289)
|. +++|...+++ .+|+|||+||++++.. .|..+++.|.+ +|+|+++|+||||.|+.+. ...++..+++++.
T Consensus 70 g~~~i~Y~~~G~g~~~~~gp~lvllHG~~~~~~--~w~~~~~~L~~-~~~via~Dl~G~G~S~~~~~~~~~~~~~a~~l~ 146 (360)
T PLN02679 70 GEYSINYLVKGSPEVTSSGPPVLLVHGFGASIP--HWRRNIGVLAK-NYTVYAIDLLGFGASDKPPGFSYTMETWAELIL 146 (360)
T ss_pred CceeEEEEEecCcccCCCCCeEEEECCCCCCHH--HHHHHHHHHhc-CCEEEEECCCCCCCCCCCCCccccHHHHHHHHH
Confidence 44 7776555544 4589999999999885 49999999987 6999999999999998654 2457788899999
Q ss_pred HHHHHHHhcCCceEEEEEeChhHHHHHHHHHh-CCC-ccEEEEeccCCccccc-cccc-----ccc--hhHhh-------
Q 022960 106 AIVQDFCAKGRVITAIIGHSKGGNAVLLYASK-YND-ISIVINISGRFNLKRG-IEGR-----LGL--GYLQR------- 168 (289)
Q Consensus 106 ~~i~~l~~~~~~~~~l~G~S~Gg~~a~~~a~~-~p~-v~~~v~~~~~~~~~~~-~~~~-----~~~--~~~~~------- 168 (289)
++++.+ +.++++|+||||||.+++.++.. +|+ |+++|++++....... .... ... .+...
T Consensus 147 ~~l~~l---~~~~~~lvGhS~Gg~ia~~~a~~~~P~rV~~LVLi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (360)
T PLN02679 147 DFLEEV---VQKPTVLIGNSVGSLACVIAASESTRDLVRGLVLLNCAGGMNNKAVVDDWRIKLLLPLLWLIDFLLKQRGI 223 (360)
T ss_pred HHHHHh---cCCCeEEEEECHHHHHHHHHHHhcChhhcCEEEEECCccccccccccchHHHhhhcchHHHHHHHhhchhh
Confidence 999887 77799999999999999998874 688 9999999875322100 0000 000 00000
Q ss_pred ---hhh-----cCcc----cccccccccc------------cccChhhhhhhhcc--chhhhhcccccCceEEEEEeCCC
Q 022960 169 ---IKQ-----NGFI----DVRNKKGKLE------------YRVTQESLMDRLST--DIHAACHMICQDCRVLTIHGTKD 222 (289)
Q Consensus 169 ---~~~-----~~~~----~~~~~~~~~~------------~~~~~~~~~~~~~~--~~~~~~~~~~~~~P~l~i~g~~D 222 (289)
+.. ..+. .......... .......+...... .........++++|+|+++|++|
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~PtLii~G~~D 303 (360)
T PLN02679 224 ASALFNRVKQRDNLKNILLSVYGNKEAVDDELVEIIRGPADDEGALDAFVSIVTGPPGPNPIKLIPRISLPILVLWGDQD 303 (360)
T ss_pred HHHHHHHhcCHHHHHHHHHHhccCcccCCHHHHHHHHhhccCCChHHHHHHHHhcCCCCCHHHHhhhcCCCEEEEEeCCC
Confidence 000 0000 0000000000 00000011111100 00000111246899999999999
Q ss_pred CccChhh-----HHHHHhhCCCcEEEEEcCCCcccc-cCchHHHHHHHHHHHh
Q 022960 223 KMVPAED-----ALEFDKFIPNHKLHIIEGADHEFT-SHQDELASLVIQFIKA 269 (289)
Q Consensus 223 ~~~~~~~-----~~~~~~~~~~~~~~~~~~~gH~~~-~~~~~~~~~i~~fl~~ 269 (289)
.++|++. .+.+.+.++++++++++++||+++ +.++++++.|.+||++
T Consensus 304 ~~~p~~~~~~~~~~~l~~~ip~~~l~~i~~aGH~~~~E~Pe~~~~~I~~FL~~ 356 (360)
T PLN02679 304 PFTPLDGPVGKYFSSLPSQLPNVTLYVLEGVGHCPHDDRPDLVHEKLLPWLAQ 356 (360)
T ss_pred CCcCchhhHHHHHHhhhccCCceEEEEcCCCCCCccccCHHHHHHHHHHHHHh
Confidence 9998763 345667789999999999999976 6678999999999975
No 19
>KOG4178 consensus Soluble epoxide hydrolase [Lipid transport and metabolism]
Probab=99.97 E-value=8.3e-30 Score=191.71 Aligned_cols=241 Identities=18% Similarity=0.231 Sum_probs=165.4
Q ss_pred eEEeeCCCCceEEEEEeecCCCcEEEEEcCCCCCCCCcchHHHHHHHHHcCccEEEEccccCCCCCCCcc--ccchHHHH
Q 022960 24 RVVIPNSHGEKLVGILHETGSKQLVIVCHGFQSTKDRIPMVNLAAALEREGISAFRFDFSGNGESEGSFL--YGNYRREA 101 (289)
Q Consensus 24 ~~~~~~~~g~~l~~~~~~~~~~~~iv~~hG~~~~~~~~~~~~~~~~l~~~G~~v~~~d~~G~G~s~~~~~--~~~~~~~~ 101 (289)
+..+.+.+|.++++...+++.+|.|+++||++...-+ |+.....|+.+||+|+++|+||+|.|+.+.. .++....+
T Consensus 23 ~hk~~~~~gI~~h~~e~g~~~gP~illlHGfPe~wys--wr~q~~~la~~~~rviA~DlrGyG~Sd~P~~~~~Yt~~~l~ 100 (322)
T KOG4178|consen 23 SHKFVTYKGIRLHYVEGGPGDGPIVLLLHGFPESWYS--WRHQIPGLASRGYRVIAPDLRGYGFSDAPPHISEYTIDELV 100 (322)
T ss_pred ceeeEEEccEEEEEEeecCCCCCEEEEEccCCccchh--hhhhhhhhhhcceEEEecCCCCCCCCCCCCCcceeeHHHHH
Confidence 3344444567777666677799999999999999854 9999999999999999999999999998764 66788899
Q ss_pred HHHHHHHHHHHhcCCceEEEEEeChhHHHHHHHHHhCCC-ccEEEEeccCCccc-----ccccccccchhH---------
Q 022960 102 EDLRAIVQDFCAKGRVITAIIGHSKGGNAVLLYASKYND-ISIVINISGRFNLK-----RGIEGRLGLGYL--------- 166 (289)
Q Consensus 102 ~d~~~~i~~l~~~~~~~~~l~G~S~Gg~~a~~~a~~~p~-v~~~v~~~~~~~~~-----~~~~~~~~~~~~--------- 166 (289)
.|+..+++.| +.++++++||++|+.+|+.+|..+|+ |+++|+++.+.... ..........+.
T Consensus 101 ~di~~lld~L---g~~k~~lvgHDwGaivaw~la~~~Perv~~lv~~nv~~~~p~~~~~~~~~~~f~~~~y~~~fQ~~~~ 177 (322)
T KOG4178|consen 101 GDIVALLDHL---GLKKAFLVGHDWGAIVAWRLALFYPERVDGLVTLNVPFPNPKLKPLDSSKAIFGKSYYICLFQEPGK 177 (322)
T ss_pred HHHHHHHHHh---ccceeEEEeccchhHHHHHHHHhChhhcceEEEecCCCCCcccchhhhhccccCccceeEeccccCc
Confidence 9999999999 78899999999999999999999999 99999998765411 000000000000
Q ss_pred --------------hhhhhcCcc--ccccc--ccccccccChhhh------------------hhhhccchh-hhhcccc
Q 022960 167 --------------QRIKQNGFI--DVRNK--KGKLEYRVTQESL------------------MDRLSTDIH-AACHMIC 209 (289)
Q Consensus 167 --------------~~~~~~~~~--~~~~~--~~~~~~~~~~~~~------------------~~~~~~~~~-~~~~~~~ 209 (289)
..+...... ..... .....| .+.+.+ .+.+...+. ......+
T Consensus 178 ~E~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w-~t~edi~~~~~~f~~~g~~gplNyyrn~~r~w~a~~~~~~~ 256 (322)
T KOG4178|consen 178 PETELSKDDTEMLVKTFRTRKTPGPLIVPKQPNENPLW-LTEEDIAFYVSKFQIDGFTGPLNYYRNFRRNWEAAPWALAK 256 (322)
T ss_pred chhhhccchhHHhHHhhhccccCCccccCCCCCCccch-hhHHHHHHHHhccccccccccchhhHHHhhCchhccccccc
Confidence 000000000 00000 000000 011110 011111110 1112235
Q ss_pred cCceEEEEEeCCCCccChh-hHHHHHhhCCCc-EEEEEcCCCcccc-cCchHHHHHHHHHHHhh
Q 022960 210 QDCRVLTIHGTKDKMVPAE-DALEFDKFIPNH-KLHIIEGADHEFT-SHQDELASLVIQFIKAN 270 (289)
Q Consensus 210 ~~~P~l~i~g~~D~~~~~~-~~~~~~~~~~~~-~~~~~~~~gH~~~-~~~~~~~~~i~~fl~~~ 270 (289)
+++|+++++|+.|.+.+.. ....+.+..++. +.++++|+||+.+ ++++++++.|.+|+++.
T Consensus 257 i~iPv~fi~G~~D~v~~~p~~~~~~rk~vp~l~~~vv~~~~gH~vqqe~p~~v~~~i~~f~~~~ 320 (322)
T KOG4178|consen 257 ITIPVLFIWGDLDPVLPYPIFGELYRKDVPRLTERVVIEGIGHFVQQEKPQEVNQAILGFINSF 320 (322)
T ss_pred cccceEEEEecCcccccchhHHHHHHHhhccccceEEecCCcccccccCHHHHHHHHHHHHHhh
Confidence 6899999999999998866 445556666764 8899999999976 77889999999999875
No 20
>COG2267 PldB Lysophospholipase [Lipid metabolism]
Probab=99.97 E-value=1.4e-29 Score=196.72 Aligned_cols=250 Identities=22% Similarity=0.304 Sum_probs=171.5
Q ss_pred ceeeEEeeCCCCceEEEEEeecC-C-CcEEEEEcCCCCCCCCcchHHHHHHHHHcCccEEEEccccCCCCC-CC-ccccc
Q 022960 21 QRRRVVIPNSHGEKLVGILHETG-S-KQLVIVCHGFQSTKDRIPMVNLAAALEREGISAFRFDFSGNGESE-GS-FLYGN 96 (289)
Q Consensus 21 ~~~~~~~~~~~g~~l~~~~~~~~-~-~~~iv~~hG~~~~~~~~~~~~~~~~l~~~G~~v~~~d~~G~G~s~-~~-~~~~~ 96 (289)
...+..+...||..+.++.+.+. + ..+||++||++.+... |..++..|..+||.|+++|+||||.|. +. ....+
T Consensus 8 ~~~~~~~~~~d~~~~~~~~~~~~~~~~g~Vvl~HG~~Eh~~r--y~~la~~l~~~G~~V~~~D~RGhG~S~r~~rg~~~~ 85 (298)
T COG2267 8 TRTEGYFTGADGTRLRYRTWAAPEPPKGVVVLVHGLGEHSGR--YEELADDLAARGFDVYALDLRGHGRSPRGQRGHVDS 85 (298)
T ss_pred ccccceeecCCCceEEEEeecCCCCCCcEEEEecCchHHHHH--HHHHHHHHHhCCCEEEEecCCCCCCCCCCCcCCchh
Confidence 34566778889999998887665 3 3799999999999965 889999999999999999999999997 33 34556
Q ss_pred hHHHHHHHHHHHHHHHhc-CCceEEEEEeChhHHHHHHHHHhCCC-ccEEEEeccCCcccc--cc--cccccchhHhhhh
Q 022960 97 YRREAEDLRAIVQDFCAK-GRVITAIIGHSKGGNAVLLYASKYND-ISIVINISGRFNLKR--GI--EGRLGLGYLQRIK 170 (289)
Q Consensus 97 ~~~~~~d~~~~i~~l~~~-~~~~~~l~G~S~Gg~~a~~~a~~~p~-v~~~v~~~~~~~~~~--~~--~~~~~~~~~~~~~ 170 (289)
+.++.+|+.++++.+... ...+++++||||||.+++.++.+++. ++++|+.+|.+.... .. ...........+.
T Consensus 86 f~~~~~dl~~~~~~~~~~~~~~p~~l~gHSmGg~Ia~~~~~~~~~~i~~~vLssP~~~l~~~~~~~~~~~~~~~~~~~~~ 165 (298)
T COG2267 86 FADYVDDLDAFVETIAEPDPGLPVFLLGHSMGGLIALLYLARYPPRIDGLVLSSPALGLGGAILRLILARLALKLLGRIR 165 (298)
T ss_pred HHHHHHHHHHHHHHHhccCCCCCeEEEEeCcHHHHHHHHHHhCCccccEEEEECccccCChhHHHHHHHHHhcccccccc
Confidence 888999999999998764 45689999999999999999999987 999999999887763 00 0000000000000
Q ss_pred hc-CcccccccccccccccChhhhhhhhccc-------------------h--hhhhcccccCceEEEEEeCCCCccC-h
Q 022960 171 QN-GFIDVRNKKGKLEYRVTQESLMDRLSTD-------------------I--HAACHMICQDCRVLTIHGTKDKMVP-A 227 (289)
Q Consensus 171 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------~--~~~~~~~~~~~P~l~i~g~~D~~~~-~ 227 (289)
.. .+....................+.+..+ . ........+++|+|+++|++|.+++ .
T Consensus 166 p~~~~~~~~~~~~~~~~~sr~~~~~~~~~~dP~~~~~~~~~~w~~~~~~a~~~~~~~~~~~~~~PvLll~g~~D~vv~~~ 245 (298)
T COG2267 166 PKLPVDSNLLEGVLTDDLSRDPAEVAAYEADPLIGVGGPVSRWVDLALLAGRVPALRDAPAIALPVLLLQGGDDRVVDNV 245 (298)
T ss_pred cccccCcccccCcCcchhhcCHHHHHHHhcCCccccCCccHHHHHHHHHhhcccchhccccccCCEEEEecCCCccccCc
Confidence 00 0000000000000000001111111110 0 0111123568999999999999999 6
Q ss_pred hhHHHHHhhC--CCcEEEEEcCCCcccccCc----hHHHHHHHHHHHhhcC
Q 022960 228 EDALEFDKFI--PNHKLHIIEGADHEFTSHQ----DELASLVIQFIKANYQ 272 (289)
Q Consensus 228 ~~~~~~~~~~--~~~~~~~~~~~gH~~~~~~----~~~~~~i~~fl~~~~~ 272 (289)
+...++.+.. +++++++++|+.|..+.++ +++.+.+.+|+.+...
T Consensus 246 ~~~~~~~~~~~~~~~~~~~~~g~~He~~~E~~~~r~~~~~~~~~~l~~~~~ 296 (298)
T COG2267 246 EGLARFFERAGSPDKELKVIPGAYHELLNEPDRAREEVLKDILAWLAEALP 296 (298)
T ss_pred HHHHHHHHhcCCCCceEEecCCcchhhhcCcchHHHHHHHHHHHHHHhhcc
Confidence 7777777665 4679999999999977543 5688888888887653
No 21
>PLN02578 hydrolase
Probab=99.97 E-value=5.5e-30 Score=206.04 Aligned_cols=230 Identities=17% Similarity=0.232 Sum_probs=154.6
Q ss_pred CCCceEEEEEeecCCCcEEEEEcCCCCCCCCcchHHHHHHHHHcCccEEEEccccCCCCCCCccccchHHHHHHHHHHHH
Q 022960 30 SHGEKLVGILHETGSKQLVIVCHGFQSTKDRIPMVNLAAALEREGISAFRFDFSGNGESEGSFLYGNYRREAEDLRAIVQ 109 (289)
Q Consensus 30 ~~g~~l~~~~~~~~~~~~iv~~hG~~~~~~~~~~~~~~~~l~~~G~~v~~~d~~G~G~s~~~~~~~~~~~~~~d~~~~i~ 109 (289)
.+|.+++|. ..+++++||++||++++.. .|..+.+.|++ +|+|+++|+||||.|+++...++...+++++.++++
T Consensus 73 ~~~~~i~Y~--~~g~g~~vvliHG~~~~~~--~w~~~~~~l~~-~~~v~~~D~~G~G~S~~~~~~~~~~~~a~~l~~~i~ 147 (354)
T PLN02578 73 WRGHKIHYV--VQGEGLPIVLIHGFGASAF--HWRYNIPELAK-KYKVYALDLLGFGWSDKALIEYDAMVWRDQVADFVK 147 (354)
T ss_pred ECCEEEEEE--EcCCCCeEEEECCCCCCHH--HHHHHHHHHhc-CCEEEEECCCCCCCCCCcccccCHHHHHHHHHHHHH
Confidence 346667644 4456789999999999874 48889999986 499999999999999887666677788889999888
Q ss_pred HHHhcCCceEEEEEeChhHHHHHHHHHhCCC-ccEEEEeccCCccccccc----------cccc----ch---hHhhhhh
Q 022960 110 DFCAKGRVITAIIGHSKGGNAVLLYASKYND-ISIVINISGRFNLKRGIE----------GRLG----LG---YLQRIKQ 171 (289)
Q Consensus 110 ~l~~~~~~~~~l~G~S~Gg~~a~~~a~~~p~-v~~~v~~~~~~~~~~~~~----------~~~~----~~---~~~~~~~ 171 (289)
.+ ..++++++|||+||.+++.+|.++|+ |+++|++++......... .... .. .......
T Consensus 148 ~~---~~~~~~lvG~S~Gg~ia~~~A~~~p~~v~~lvLv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (354)
T PLN02578 148 EV---VKEPAVLVGNSLGGFTALSTAVGYPELVAGVALLNSAGQFGSESREKEEAIVVEETVLTRFVVKPLKEWFQRVVL 224 (354)
T ss_pred Hh---ccCCeEEEEECHHHHHHHHHHHhChHhcceEEEECCCccccccccccccccccccchhhHHHhHHHHHHHHHHHH
Confidence 87 56789999999999999999999999 999999976432211000 0000 00 0000000
Q ss_pred -------c-------Cccc-cccccccccc--------cc---Chhhhhhhhc------cchhhhhcccccCceEEEEEe
Q 022960 172 -------N-------GFID-VRNKKGKLEY--------RV---TQESLMDRLS------TDIHAACHMICQDCRVLTIHG 219 (289)
Q Consensus 172 -------~-------~~~~-~~~~~~~~~~--------~~---~~~~~~~~~~------~~~~~~~~~~~~~~P~l~i~g 219 (289)
. .... .........+ .. ....+...+. ..........++++|+++++|
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~PvLiI~G 304 (354)
T PLN02578 225 GFLFWQAKQPSRIESVLKSVYKDKSNVDDYLVESITEPAADPNAGEVYYRLMSRFLFNQSRYTLDSLLSKLSCPLLLLWG 304 (354)
T ss_pred HHHHHHhcCHHHHHHHHHHhcCCcccCCHHHHHHHHhcccCCchHHHHHHHHHHHhcCCCCCCHHHHhhcCCCCEEEEEe
Confidence 0 0000 0000000000 00 0000010000 000001111246999999999
Q ss_pred CCCCccChhhHHHHHhhCCCcEEEEEcCCCcccc-cCchHHHHHHHHHHH
Q 022960 220 TKDKMVPAEDALEFDKFIPNHKLHIIEGADHEFT-SHQDELASLVIQFIK 268 (289)
Q Consensus 220 ~~D~~~~~~~~~~~~~~~~~~~~~~~~~~gH~~~-~~~~~~~~~i~~fl~ 268 (289)
++|.++|.+.++.+.+.+++++++.+ ++||+++ ++++++++.|.+|++
T Consensus 305 ~~D~~v~~~~~~~l~~~~p~a~l~~i-~~GH~~~~e~p~~~~~~I~~fl~ 353 (354)
T PLN02578 305 DLDPWVGPAKAEKIKAFYPDTTLVNL-QAGHCPHDEVPEQVNKALLEWLS 353 (354)
T ss_pred CCCCCCCHHHHHHHHHhCCCCEEEEe-CCCCCccccCHHHHHHHHHHHHh
Confidence 99999999999999999999999999 5899976 677899999999985
No 22
>PLN03087 BODYGUARD 1 domain containing hydrolase; Provisional
Probab=99.97 E-value=8e-30 Score=207.98 Aligned_cols=238 Identities=18% Similarity=0.222 Sum_probs=155.3
Q ss_pred eeCCCCceEEEEEeecCC---CcEEEEEcCCCCCCCCcchHH-HHHHHH---HcCccEEEEccccCCCCCCCc-cccchH
Q 022960 27 IPNSHGEKLVGILHETGS---KQLVIVCHGFQSTKDRIPMVN-LAAALE---REGISAFRFDFSGNGESEGSF-LYGNYR 98 (289)
Q Consensus 27 ~~~~~g~~l~~~~~~~~~---~~~iv~~hG~~~~~~~~~~~~-~~~~l~---~~G~~v~~~d~~G~G~s~~~~-~~~~~~ 98 (289)
+.+.++.++++...++.. +++|||+||++++... |.. +.+.|. +.+|+|+++|+||||.|+.+. ..++++
T Consensus 180 ~~~~~~~~l~~~~~gp~~~~~k~~VVLlHG~~~s~~~--W~~~~~~~L~~~~~~~yrVia~Dl~G~G~S~~p~~~~ytl~ 257 (481)
T PLN03087 180 WLSSSNESLFVHVQQPKDNKAKEDVLFIHGFISSSAF--WTETLFPNFSDAAKSTYRLFAVDLLGFGRSPKPADSLYTLR 257 (481)
T ss_pred eEeeCCeEEEEEEecCCCCCCCCeEEEECCCCccHHH--HHHHHHHHHHHHhhCCCEEEEECCCCCCCCcCCCCCcCCHH
Confidence 333456788877776643 5799999999998853 764 445655 358999999999999998653 335677
Q ss_pred HHHHHHH-HHHHHHHhcCCceEEEEEeChhHHHHHHHHHhCCC-ccEEEEeccCCccccccccc---cc-----c-----
Q 022960 99 REAEDLR-AIVQDFCAKGRVITAIIGHSKGGNAVLLYASKYND-ISIVINISGRFNLKRGIEGR---LG-----L----- 163 (289)
Q Consensus 99 ~~~~d~~-~~i~~l~~~~~~~~~l~G~S~Gg~~a~~~a~~~p~-v~~~v~~~~~~~~~~~~~~~---~~-----~----- 163 (289)
++++++. .+++.+ +.++++++||||||.+++.++.++|+ |+++|+++++.......... .. .
T Consensus 258 ~~a~~l~~~ll~~l---g~~k~~LVGhSmGG~iAl~~A~~~Pe~V~~LVLi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 334 (481)
T PLN03087 258 EHLEMIERSVLERY---KVKSFHIVAHSLGCILALALAVKHPGAVKSLTLLAPPYYPVPKGVQATQYVMRKVAPRRVWPP 334 (481)
T ss_pred HHHHHHHHHHHHHc---CCCCEEEEEECHHHHHHHHHHHhChHhccEEEEECCCccccccchhHHHHHHHHhcccccCCc
Confidence 8888884 677776 78899999999999999999999999 99999998754322110000 00 0
Q ss_pred --------hhHhhhhhcC---------ccc----cccccccccccc------C-h---hhhhhhhcc-----chhhhhcc
Q 022960 164 --------GYLQRIKQNG---------FID----VRNKKGKLEYRV------T-Q---ESLMDRLST-----DIHAACHM 207 (289)
Q Consensus 164 --------~~~~~~~~~~---------~~~----~~~~~~~~~~~~------~-~---~~~~~~~~~-----~~~~~~~~ 207 (289)
.+........ ... ............ . . ..+...+.. +.......
T Consensus 335 ~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~l~~~i~~~~~~l~~~l~~l~ 414 (481)
T PLN03087 335 IAFGASVACWYEHISRTICLVICKNHRLWEFLTRLLTRNRMRTFLIEGFFCHTHNAAWHTLHNIICGSGSKLDGYLDHVR 414 (481)
T ss_pred cccchhHHHHHHHHHhhhhcccccchHHHHHHHHHhhhhhhhHHHHHHHHhccchhhHHHHHHHHhchhhhhhhHHHHHH
Confidence 0000000000 000 000000000000 0 0 000000000 00000001
Q ss_pred cccCceEEEEEeCCCCccChhhHHHHHhhCCCcEEEEEcCCCcccc--cCchHHHHHHHHHHHh
Q 022960 208 ICQDCRVLTIHGTKDKMVPAEDALEFDKFIPNHKLHIIEGADHEFT--SHQDELASLVIQFIKA 269 (289)
Q Consensus 208 ~~~~~P~l~i~g~~D~~~~~~~~~~~~~~~~~~~~~~~~~~gH~~~--~~~~~~~~~i~~fl~~ 269 (289)
.++++|+|+++|++|.++|++..+.+++.+|++++++++++||..+ ++++++++.|.+|.+.
T Consensus 415 ~~I~vPtLII~Ge~D~ivP~~~~~~la~~iP~a~l~vI~~aGH~~~v~e~p~~fa~~L~~F~~~ 478 (481)
T PLN03087 415 DQLKCDVAIFHGGDDELIPVECSYAVKAKVPRARVKVIDDKDHITIVVGRQKEFARELEEIWRR 478 (481)
T ss_pred HhCCCCEEEEEECCCCCCCHHHHHHHHHhCCCCEEEEeCCCCCcchhhcCHHHHHHHHHHHhhc
Confidence 1468999999999999999999999999999999999999999954 6789999999999854
No 23
>PLN02652 hydrolase; alpha/beta fold family protein
Probab=99.97 E-value=3.7e-29 Score=201.69 Aligned_cols=249 Identities=16% Similarity=0.260 Sum_probs=166.2
Q ss_pred ceeeEEeeCCCCceEEEEEeecC---CCcEEEEEcCCCCCCCCcchHHHHHHHHHcCccEEEEccccCCCCCCCcc-ccc
Q 022960 21 QRRRVVIPNSHGEKLVGILHETG---SKQLVIVCHGFQSTKDRIPMVNLAAALEREGISAFRFDFSGNGESEGSFL-YGN 96 (289)
Q Consensus 21 ~~~~~~~~~~~g~~l~~~~~~~~---~~~~iv~~hG~~~~~~~~~~~~~~~~l~~~G~~v~~~d~~G~G~s~~~~~-~~~ 96 (289)
......+...++..+.+..+.+. .+++||++||++++.. .|..+++.|+++||+|+++|+||||.|.+... ..+
T Consensus 109 ~~~~~~~~~~~~~~l~~~~~~p~~~~~~~~Vl~lHG~~~~~~--~~~~~a~~L~~~Gy~V~~~D~rGhG~S~~~~~~~~~ 186 (395)
T PLN02652 109 RWATSLFYGARRNALFCRSWAPAAGEMRGILIIIHGLNEHSG--RYLHFAKQLTSCGFGVYAMDWIGHGGSDGLHGYVPS 186 (395)
T ss_pred eEEEEEEECCCCCEEEEEEecCCCCCCceEEEEECCchHHHH--HHHHHHHHHHHCCCEEEEeCCCCCCCCCCCCCCCcC
Confidence 34566777788888888877663 4579999999998874 48899999999999999999999999987543 346
Q ss_pred hHHHHHHHHHHHHHHHhc-CCceEEEEEeChhHHHHHHHHHhCC---C-ccEEEEeccCCcccccccc-cccchhHhhhh
Q 022960 97 YRREAEDLRAIVQDFCAK-GRVITAIIGHSKGGNAVLLYASKYN---D-ISIVINISGRFNLKRGIEG-RLGLGYLQRIK 170 (289)
Q Consensus 97 ~~~~~~d~~~~i~~l~~~-~~~~~~l~G~S~Gg~~a~~~a~~~p---~-v~~~v~~~~~~~~~~~~~~-~~~~~~~~~~~ 170 (289)
++...+|+.++++++... ...+++++||||||.+++.++. +| + ++++|+.+|.......... .........+.
T Consensus 187 ~~~~~~Dl~~~l~~l~~~~~~~~i~lvGhSmGG~ial~~a~-~p~~~~~v~glVL~sP~l~~~~~~~~~~~~~~l~~~~~ 265 (395)
T PLN02652 187 LDYVVEDTEAFLEKIRSENPGVPCFLFGHSTGGAVVLKAAS-YPSIEDKLEGIVLTSPALRVKPAHPIVGAVAPIFSLVA 265 (395)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCCEEEEEECHHHHHHHHHHh-ccCcccccceEEEECcccccccchHHHHHHHHHHHHhC
Confidence 677889999999999765 3347999999999999998764 44 3 8999999987643321100 00000011110
Q ss_pred hcC-ccccccc------c---------cccccc--cChhhhhhhhccchhhhhcccccCceEEEEEeCCCCccChhhHHH
Q 022960 171 QNG-FIDVRNK------K---------GKLEYR--VTQESLMDRLSTDIHAACHMICQDCRVLTIHGTKDKMVPAEDALE 232 (289)
Q Consensus 171 ~~~-~~~~~~~------~---------~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~P~l~i~g~~D~~~~~~~~~~ 232 (289)
... +...... . ....+. .....................++++|+|+++|++|.++|++.++.
T Consensus 266 p~~~~~~~~~~~~~~s~~~~~~~~~~~dp~~~~g~i~~~~~~~~~~~~~~l~~~L~~I~vPvLIi~G~~D~vvp~~~a~~ 345 (395)
T PLN02652 266 PRFQFKGANKRGIPVSRDPAALLAKYSDPLVYTGPIRVRTGHEILRISSYLTRNFKSVTVPFMVLHGTADRVTDPLASQD 345 (395)
T ss_pred CCCcccCcccccCCcCCCHHHHHHHhcCCCcccCCchHHHHHHHHHHHHHHHhhcccCCCCEEEEEeCCCCCCCHHHHHH
Confidence 000 0000000 0 000000 000000000000000011123568999999999999999999999
Q ss_pred HHhhCC--CcEEEEEcCCCcccc-c-CchHHHHHHHHHHHhhcC
Q 022960 233 FDKFIP--NHKLHIIEGADHEFT-S-HQDELASLVIQFIKANYQ 272 (289)
Q Consensus 233 ~~~~~~--~~~~~~~~~~gH~~~-~-~~~~~~~~i~~fl~~~~~ 272 (289)
+++..+ +++++.+++++|..+ + +++++.+.+.+||+.++.
T Consensus 346 l~~~~~~~~k~l~~~~ga~H~l~~e~~~e~v~~~I~~FL~~~~~ 389 (395)
T PLN02652 346 LYNEAASRHKDIKLYDGFLHDLLFEPEREEVGRDIIDWMEKRLD 389 (395)
T ss_pred HHHhcCCCCceEEEECCCeEEeccCCCHHHHHHHHHHHHHHHhh
Confidence 988865 478999999999965 3 457899999999998774
No 24
>TIGR03611 RutD pyrimidine utilization protein D. This protein is observed in operons extremely similar to that characterized in E. coli K-12 responsible for the import and catabolism of pyrimidines, primarily uracil. This protein is a member of the hydrolase, alpha/beta fold family defined by pfam00067.
Probab=99.97 E-value=5.4e-30 Score=198.33 Aligned_cols=218 Identities=17% Similarity=0.275 Sum_probs=149.4
Q ss_pred CCCcEEEEEcCCCCCCCCcchHHHHHHHHHcCccEEEEccccCCCCCCCc-cccchHHHHHHHHHHHHHHHhcCCceEEE
Q 022960 43 GSKQLVIVCHGFQSTKDRIPMVNLAAALEREGISAFRFDFSGNGESEGSF-LYGNYRREAEDLRAIVQDFCAKGRVITAI 121 (289)
Q Consensus 43 ~~~~~iv~~hG~~~~~~~~~~~~~~~~l~~~G~~v~~~d~~G~G~s~~~~-~~~~~~~~~~d~~~~i~~l~~~~~~~~~l 121 (289)
.++|+||++||++++.. .|..+++.|.+ ||+|+++|+||||.|.... ...+++++++++.++++.+ +.+++++
T Consensus 11 ~~~~~iv~lhG~~~~~~--~~~~~~~~l~~-~~~vi~~D~~G~G~S~~~~~~~~~~~~~~~~~~~~i~~~---~~~~~~l 84 (257)
T TIGR03611 11 ADAPVVVLSSGLGGSGS--YWAPQLDVLTQ-RFHVVTYDHRGTGRSPGELPPGYSIAHMADDVLQLLDAL---NIERFHF 84 (257)
T ss_pred CCCCEEEEEcCCCcchh--HHHHHHHHHHh-ccEEEEEcCCCCCCCCCCCcccCCHHHHHHHHHHHHHHh---CCCcEEE
Confidence 35789999999999885 48888888876 6999999999999997643 3457788889999999887 6778999
Q ss_pred EEeChhHHHHHHHHHhCCC-ccEEEEeccCCccccccccccc--chhHhhhhhcCccc----------ccccc-------
Q 022960 122 IGHSKGGNAVLLYASKYND-ISIVINISGRFNLKRGIEGRLG--LGYLQRIKQNGFID----------VRNKK------- 181 (289)
Q Consensus 122 ~G~S~Gg~~a~~~a~~~p~-v~~~v~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~----------~~~~~------- 181 (289)
+||||||.+++.++..+|+ ++++|++++............. ..+........+.. .....
T Consensus 85 ~G~S~Gg~~a~~~a~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (257)
T TIGR03611 85 VGHALGGLIGLQLALRYPERLLSLVLINAWSRPDPHTRRCFDVRIALLQHAGPEAYVHAQALFLYPADWISENAARLAAD 164 (257)
T ss_pred EEechhHHHHHHHHHHChHHhHHheeecCCCCCChhHHHHHHHHHHHHhccCcchhhhhhhhhhccccHhhccchhhhhh
Confidence 9999999999999999998 9999999875443211100000 00000000000000 00000
Q ss_pred -ccccccc-Chhhhhhh----hccchhhhhcccccCceEEEEEeCCCCccChhhHHHHHhhCCCcEEEEEcCCCcccc-c
Q 022960 182 -GKLEYRV-TQESLMDR----LSTDIHAACHMICQDCRVLTIHGTKDKMVPAEDALEFDKFIPNHKLHIIEGADHEFT-S 254 (289)
Q Consensus 182 -~~~~~~~-~~~~~~~~----~~~~~~~~~~~~~~~~P~l~i~g~~D~~~~~~~~~~~~~~~~~~~~~~~~~~gH~~~-~ 254 (289)
....... ........ ...+.... ...+++|+++++|++|.++|++.++.+++.+++++++.++++||.++ +
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~i~~P~l~i~g~~D~~~~~~~~~~~~~~~~~~~~~~~~~~gH~~~~~ 242 (257)
T TIGR03611 165 EAHALAHFPGKANVLRRINALEAFDVSAR--LDRIQHPVLLIANRDDMLVPYTQSLRLAAALPNAQLKLLPYGGHASNVT 242 (257)
T ss_pred hhhcccccCccHHHHHHHHHHHcCCcHHH--hcccCccEEEEecCcCcccCHHHHHHHHHhcCCceEEEECCCCCCcccc
Confidence 0000000 00000000 01111111 12458999999999999999999999999999999999999999965 6
Q ss_pred CchHHHHHHHHHHH
Q 022960 255 HQDELASLVIQFIK 268 (289)
Q Consensus 255 ~~~~~~~~i~~fl~ 268 (289)
+++++++.|.+||+
T Consensus 243 ~~~~~~~~i~~fl~ 256 (257)
T TIGR03611 243 DPETFNRALLDFLK 256 (257)
T ss_pred CHHHHHHHHHHHhc
Confidence 77889999999985
No 25
>PRK03204 haloalkane dehalogenase; Provisional
Probab=99.97 E-value=1.3e-29 Score=198.19 Aligned_cols=237 Identities=16% Similarity=0.177 Sum_probs=152.3
Q ss_pred eeeEEeeCCCCceEEEEEeecCCCcEEEEEcCCCCCCCCcchHHHHHHHHHcCccEEEEccccCCCCCCCcc-ccchHHH
Q 022960 22 RRRVVIPNSHGEKLVGILHETGSKQLVIVCHGFQSTKDRIPMVNLAAALEREGISAFRFDFSGNGESEGSFL-YGNYRRE 100 (289)
Q Consensus 22 ~~~~~~~~~~g~~l~~~~~~~~~~~~iv~~hG~~~~~~~~~~~~~~~~l~~~G~~v~~~d~~G~G~s~~~~~-~~~~~~~ 100 (289)
.+...++. +|.++++. ..|++++|||+||++.+.. .|..+.+.|.+. |+|+++|+||||.|+.+.. ..+....
T Consensus 14 ~~~~~~~~-~~~~i~y~--~~G~~~~iv~lHG~~~~~~--~~~~~~~~l~~~-~~vi~~D~~G~G~S~~~~~~~~~~~~~ 87 (286)
T PRK03204 14 FESRWFDS-SRGRIHYI--DEGTGPPILLCHGNPTWSF--LYRDIIVALRDR-FRCVAPDYLGFGLSERPSGFGYQIDEH 87 (286)
T ss_pred ccceEEEc-CCcEEEEE--ECCCCCEEEEECCCCccHH--HHHHHHHHHhCC-cEEEEECCCCCCCCCCCCccccCHHHH
Confidence 33444444 56677744 4456789999999987663 488899999764 9999999999999986543 3456777
Q ss_pred HHHHHHHHHHHHhcCCceEEEEEeChhHHHHHHHHHhCCC-ccEEEEeccCCcccccccccc----------cch-----
Q 022960 101 AEDLRAIVQDFCAKGRVITAIIGHSKGGNAVLLYASKYND-ISIVINISGRFNLKRGIEGRL----------GLG----- 164 (289)
Q Consensus 101 ~~d~~~~i~~l~~~~~~~~~l~G~S~Gg~~a~~~a~~~p~-v~~~v~~~~~~~~~~~~~~~~----------~~~----- 164 (289)
++++.++++.+ +.++++++||||||.+++.++..+|+ |+++|++++............ ...
T Consensus 88 ~~~~~~~~~~~---~~~~~~lvG~S~Gg~va~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (286)
T PRK03204 88 ARVIGEFVDHL---GLDRYLSMGQDWGGPISMAVAVERADRVRGVVLGNTWFWPADTLAMKAFSRVMSSPPVQYAILRRN 164 (286)
T ss_pred HHHHHHHHHHh---CCCCEEEEEECccHHHHHHHHHhChhheeEEEEECccccCCCchhHHHHHHHhccccchhhhhhhh
Confidence 88888888877 77889999999999999999999998 999999876532111100000 000
Q ss_pred -hHhhhhhcCccccccccccccc-cc--C---hhhhh---hhhccc--hhh----hhcccccCceEEEEEeCCCCccChh
Q 022960 165 -YLQRIKQNGFIDVRNKKGKLEY-RV--T---QESLM---DRLSTD--IHA----ACHMICQDCRVLTIHGTKDKMVPAE 228 (289)
Q Consensus 165 -~~~~~~~~~~~~~~~~~~~~~~-~~--~---~~~~~---~~~~~~--~~~----~~~~~~~~~P~l~i~g~~D~~~~~~ 228 (289)
+...+................+ .. . ...+. ..+... ... ......+++|+++|+|++|.++++.
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~PtliI~G~~D~~~~~~ 244 (286)
T PRK03204 165 FFVERLIPAGTEHRPSSAVMAHYRAVQPNAAARRGVAEMPKQILAARPLLARLAREVPATLGTKPTLLVWGMKDVAFRPK 244 (286)
T ss_pred HHHHHhccccccCCCCHHHHHHhcCCCCCHHHHHHHHHHHHhcchhhHHHHHhhhhhhhhcCCCCeEEEecCCCcccCcH
Confidence 0000000000000000000000 00 0 00000 000000 000 0001112799999999999988654
Q ss_pred -hHHHHHhhCCCcEEEEEcCCCcccc-cCchHHHHHHHHHH
Q 022960 229 -DALEFDKFIPNHKLHIIEGADHEFT-SHQDELASLVIQFI 267 (289)
Q Consensus 229 -~~~~~~~~~~~~~~~~~~~~gH~~~-~~~~~~~~~i~~fl 267 (289)
..+.+.+.+++.++++++++||+++ +.|+++++.|.+||
T Consensus 245 ~~~~~~~~~ip~~~~~~i~~aGH~~~~e~Pe~~~~~i~~~~ 285 (286)
T PRK03204 245 TILPRLRATFPDHVLVELPNAKHFIQEDAPDRIAAAIIERF 285 (286)
T ss_pred HHHHHHHHhcCCCeEEEcCCCcccccccCHHHHHHHHHHhc
Confidence 5788999999999999999999976 66789999999997
No 26
>PLN03084 alpha/beta hydrolase fold protein; Provisional
Probab=99.97 E-value=3.6e-29 Score=200.48 Aligned_cols=235 Identities=15% Similarity=0.189 Sum_probs=159.9
Q ss_pred eeCCCCceEEEEEeecCCCcEEEEEcCCCCCCCCcchHHHHHHHHHcCccEEEEccccCCCCCCCcc----ccchHHHHH
Q 022960 27 IPNSHGEKLVGILHETGSKQLVIVCHGFQSTKDRIPMVNLAAALEREGISAFRFDFSGNGESEGSFL----YGNYRREAE 102 (289)
Q Consensus 27 ~~~~~g~~l~~~~~~~~~~~~iv~~hG~~~~~~~~~~~~~~~~l~~~G~~v~~~d~~G~G~s~~~~~----~~~~~~~~~ 102 (289)
....+|.++++...+++++++|||+||++.+.. .|+.+++.|++ +|+|+++|+||||.|+.+.. ..++..+++
T Consensus 109 ~~~~~~~~~~y~~~G~~~~~~ivllHG~~~~~~--~w~~~~~~L~~-~~~Via~DlpG~G~S~~p~~~~~~~ys~~~~a~ 185 (383)
T PLN03084 109 QASSDLFRWFCVESGSNNNPPVLLIHGFPSQAY--SYRKVLPVLSK-NYHAIAFDWLGFGFSDKPQPGYGFNYTLDEYVS 185 (383)
T ss_pred EEcCCceEEEEEecCCCCCCeEEEECCCCCCHH--HHHHHHHHHhc-CCEEEEECCCCCCCCCCCcccccccCCHHHHHH
Confidence 334678888866666667899999999999885 49999999986 69999999999999987643 357888999
Q ss_pred HHHHHHHHHHhcCCceEEEEEeChhHHHHHHHHHhCCC-ccEEEEeccCCcccc-ccccc---ccchhHhhhhh------
Q 022960 103 DLRAIVQDFCAKGRVITAIIGHSKGGNAVLLYASKYND-ISIVINISGRFNLKR-GIEGR---LGLGYLQRIKQ------ 171 (289)
Q Consensus 103 d~~~~i~~l~~~~~~~~~l~G~S~Gg~~a~~~a~~~p~-v~~~v~~~~~~~~~~-~~~~~---~~~~~~~~~~~------ 171 (289)
++.++++.+ +.++++|+|||+||.+++.++..+|+ |+++|++++...... ..... +.......+..
T Consensus 186 ~l~~~i~~l---~~~~~~LvG~s~GG~ia~~~a~~~P~~v~~lILi~~~~~~~~~~~p~~l~~~~~~l~~~~~~~~~~~~ 262 (383)
T PLN03084 186 SLESLIDEL---KSDKVSLVVQGYFSPPVVKYASAHPDKIKKLILLNPPLTKEHAKLPSTLSEFSNFLLGEIFSQDPLRA 262 (383)
T ss_pred HHHHHHHHh---CCCCceEEEECHHHHHHHHHHHhChHhhcEEEEECCCCccccccchHHHHHHHHHHhhhhhhcchHHH
Confidence 999999988 77789999999999999999999999 999999998753211 00000 00000000000
Q ss_pred --cCccccccc----cccccc------c----cChhhhhhhhccch---hhhh----cccccCceEEEEEeCCCCccChh
Q 022960 172 --NGFIDVRNK----KGKLEY------R----VTQESLMDRLSTDI---HAAC----HMICQDCRVLTIHGTKDKMVPAE 228 (289)
Q Consensus 172 --~~~~~~~~~----~~~~~~------~----~~~~~~~~~~~~~~---~~~~----~~~~~~~P~l~i~g~~D~~~~~~ 228 (289)
..+...... .....+ . .....+...+.... .... ...++++|+++++|++|.+++.+
T Consensus 263 ~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~l~~~~r~~~~~l~~~~~~l~~~l~~~~i~vPvLiI~G~~D~~v~~~ 342 (383)
T PLN03084 263 SDKALTSCGPYAMKEDDAMVYRRPYLTSGSSGFALNAISRSMKKELKKYIEEMRSILTDKNWKTPITVCWGLRDRWLNYD 342 (383)
T ss_pred HhhhhcccCccCCCHHHHHHHhccccCCcchHHHHHHHHHHhhcccchhhHHHHhhhccccCCCCEEEEeeCCCCCcCHH
Confidence 000000000 000000 0 00000011111100 0001 11246899999999999999999
Q ss_pred hHHHHHhhCCCcEEEEEcCCCcccc-cCchHHHHHHHHHHH
Q 022960 229 DALEFDKFIPNHKLHIIEGADHEFT-SHQDELASLVIQFIK 268 (289)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~gH~~~-~~~~~~~~~i~~fl~ 268 (289)
..+.+++. +++++.+++++||+++ +.++++++.|.+||.
T Consensus 343 ~~~~~a~~-~~a~l~vIp~aGH~~~~E~Pe~v~~~I~~Fl~ 382 (383)
T PLN03084 343 GVEDFCKS-SQHKLIELPMAGHHVQEDCGEELGGIISGILS 382 (383)
T ss_pred HHHHHHHh-cCCeEEEECCCCCCcchhCHHHHHHHHHHHhh
Confidence 88888887 5889999999999976 567899999999985
No 27
>TIGR02427 protocat_pcaD 3-oxoadipate enol-lactonase. Members of this family are 3-oxoadipate enol-lactonase. Note that the substrate is known as 3-oxoadipate enol-lactone, 2-oxo-2,3-dihydrofuran-5-acetate, 4,5-Dihydro-5-oxofuran-2-acetate, and 5-oxo-4,5-dihydrofuran-2-acetate. The enzyme the catalyzes the fourth step in the protocatechuate degradation to beta-ketoadipate and then to succinyl-CoA and acetyl-CoA. 4-hydroxybenzoate, 3-hydroxybenzoate, and vanillate all can be converted in one step to protocatechuate. This enzyme also acts in catechol degradation. In genomes that catabolize both catechol and protocatechuate, two forms of this enzyme may be found. All members of the seed alignment for this model were chosen from within protocatechuate degradation operons of at least three genes of the pathway, from genomes with the complete pathway through beta-ketoadipate.
Probab=99.97 E-value=2e-29 Score=194.21 Aligned_cols=226 Identities=16% Similarity=0.218 Sum_probs=151.7
Q ss_pred EEEEEeecC-CCcEEEEEcCCCCCCCCcchHHHHHHHHHcCccEEEEccccCCCCCCCccccchHHHHHHHHHHHHHHHh
Q 022960 35 LVGILHETG-SKQLVIVCHGFQSTKDRIPMVNLAAALEREGISAFRFDFSGNGESEGSFLYGNYRREAEDLRAIVQDFCA 113 (289)
Q Consensus 35 l~~~~~~~~-~~~~iv~~hG~~~~~~~~~~~~~~~~l~~~G~~v~~~d~~G~G~s~~~~~~~~~~~~~~d~~~~i~~l~~ 113 (289)
+++...+++ ++|+||++||++.+.. .|..+++.|.+ ||+|+++|+||||.|.......++.++++|+.++++.+
T Consensus 2 ~~~~~~g~~~~~~~li~~hg~~~~~~--~~~~~~~~l~~-~~~v~~~d~~G~G~s~~~~~~~~~~~~~~~~~~~i~~~-- 76 (251)
T TIGR02427 2 LHYRLDGAADGAPVLVFINSLGTDLR--MWDPVLPALTP-DFRVLRYDKRGHGLSDAPEGPYSIEDLADDVLALLDHL-- 76 (251)
T ss_pred ceEEeecCCCCCCeEEEEcCcccchh--hHHHHHHHhhc-ccEEEEecCCCCCCCCCCCCCCCHHHHHHHHHHHHHHh--
Confidence 344444444 6789999999998885 48889988874 79999999999999976655667888899999999887
Q ss_pred cCCceEEEEEeChhHHHHHHHHHhCCC-ccEEEEeccCCccccc--ccccc---c----chhHhhhhhcCcccccccccc
Q 022960 114 KGRVITAIIGHSKGGNAVLLYASKYND-ISIVINISGRFNLKRG--IEGRL---G----LGYLQRIKQNGFIDVRNKKGK 183 (289)
Q Consensus 114 ~~~~~~~l~G~S~Gg~~a~~~a~~~p~-v~~~v~~~~~~~~~~~--~~~~~---~----~~~~~~~~~~~~~~~~~~~~~ 183 (289)
+.++++++|||+||.+++.+|..+|+ ++++|++++....... ..... . ...........+.........
T Consensus 77 -~~~~v~liG~S~Gg~~a~~~a~~~p~~v~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (251)
T TIGR02427 77 -GIERAVFCGLSLGGLIAQGLAARRPDRVRALVLSNTAAKIGTPESWNARIAAVRAEGLAALADAVLERWFTPGFREAHP 155 (251)
T ss_pred -CCCceEEEEeCchHHHHHHHHHHCHHHhHHHhhccCccccCchhhHHHHHhhhhhccHHHHHHHHHHHHcccccccCCh
Confidence 66789999999999999999999988 9999998865432110 00000 0 000000000000000000000
Q ss_pred cc---c-----ccChhhhhh---hh-ccchhhhhcccccCceEEEEEeCCCCccChhhHHHHHhhCCCcEEEEEcCCCcc
Q 022960 184 LE---Y-----RVTQESLMD---RL-STDIHAACHMICQDCRVLTIHGTKDKMVPAEDALEFDKFIPNHKLHIIEGADHE 251 (289)
Q Consensus 184 ~~---~-----~~~~~~~~~---~~-~~~~~~~~~~~~~~~P~l~i~g~~D~~~~~~~~~~~~~~~~~~~~~~~~~~gH~ 251 (289)
.. + ......+.. .+ ..+.... ..++++|+++++|++|.++|.+..+.+.+.+++.+++.++++||.
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~Pvlii~g~~D~~~~~~~~~~~~~~~~~~~~~~~~~~gH~ 233 (251)
T TIGR02427 156 ARLDLYRNMLVRQPPDGYAGCCAAIRDADFRDR--LGAIAVPTLCIAGDQDGSTPPELVREIADLVPGARFAEIRGAGHI 233 (251)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHhcccHHHH--hhhcCCCeEEEEeccCCcCChHHHHHHHHhCCCceEEEECCCCCc
Confidence 00 0 000000000 00 0011111 124589999999999999999999999999999999999999999
Q ss_pred cc-cCchHHHHHHHHHHH
Q 022960 252 FT-SHQDELASLVIQFIK 268 (289)
Q Consensus 252 ~~-~~~~~~~~~i~~fl~ 268 (289)
.+ ++++++.+.|.+|++
T Consensus 234 ~~~~~p~~~~~~i~~fl~ 251 (251)
T TIGR02427 234 PCVEQPEAFNAALRDFLR 251 (251)
T ss_pred ccccChHHHHHHHHHHhC
Confidence 65 677889999999873
No 28
>PLN02511 hydrolase
Probab=99.97 E-value=1.6e-28 Score=198.92 Aligned_cols=255 Identities=16% Similarity=0.167 Sum_probs=162.6
Q ss_pred ccceeeEEeeCCCCceEEEEEee------cCCCcEEEEEcCCCCCCCCcchHHHHHHHHHcCccEEEEccccCCCCCCCc
Q 022960 19 VVQRRRVVIPNSHGEKLVGILHE------TGSKQLVIVCHGFQSTKDRIPMVNLAAALEREGISAFRFDFSGNGESEGSF 92 (289)
Q Consensus 19 ~~~~~~~~~~~~~g~~l~~~~~~------~~~~~~iv~~hG~~~~~~~~~~~~~~~~l~~~G~~v~~~d~~G~G~s~~~~ 92 (289)
.+..++..+.+.||..+...+.. +..+|+||++||++++....++..++..+.+.||+|+++|+||||.|....
T Consensus 68 ~~~~~re~l~~~DG~~~~ldw~~~~~~~~~~~~p~vvllHG~~g~s~~~y~~~~~~~~~~~g~~vv~~d~rG~G~s~~~~ 147 (388)
T PLN02511 68 AVRYRRECLRTPDGGAVALDWVSGDDRALPADAPVLILLPGLTGGSDDSYVRHMLLRARSKGWRVVVFNSRGCADSPVTT 147 (388)
T ss_pred CCceeEEEEECCCCCEEEEEecCcccccCCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHCCCEEEEEecCCCCCCCCCC
Confidence 34556667888899888865442 236789999999988765434566777788889999999999999997543
Q ss_pred cccchHHHHHHHHHHHHHHHhc-CCceEEEEEeChhHHHHHHHHHhCCC---ccEEEEeccCCccccc---cccc----c
Q 022960 93 LYGNYRREAEDLRAIVQDFCAK-GRVITAIIGHSKGGNAVLLYASKYND---ISIVINISGRFNLKRG---IEGR----L 161 (289)
Q Consensus 93 ~~~~~~~~~~d~~~~i~~l~~~-~~~~~~l~G~S~Gg~~a~~~a~~~p~---v~~~v~~~~~~~~~~~---~~~~----~ 161 (289)
.........+|+.++++++... ...+++++||||||.+++.++.++++ |.++++++++.+.... +... .
T Consensus 148 ~~~~~~~~~~Dl~~~i~~l~~~~~~~~~~lvG~SlGg~i~~~yl~~~~~~~~v~~~v~is~p~~l~~~~~~~~~~~~~~y 227 (388)
T PLN02511 148 PQFYSASFTGDLRQVVDHVAGRYPSANLYAAGWSLGANILVNYLGEEGENCPLSGAVSLCNPFDLVIADEDFHKGFNNVY 227 (388)
T ss_pred cCEEcCCchHHHHHHHHHHHHHCCCCCEEEEEechhHHHHHHHHHhcCCCCCceEEEEECCCcCHHHHHHHHhccHHHHH
Confidence 3222345678999999999765 33579999999999999999999875 7888888877654110 0110 0
Q ss_pred cchhHhhhh---hc---Ccccccccc--cccccccChhhhhhhhcc---------chh----hhhcccccCceEEEEEeC
Q 022960 162 GLGYLQRIK---QN---GFIDVRNKK--GKLEYRVTQESLMDRLST---------DIH----AACHMICQDCRVLTIHGT 220 (289)
Q Consensus 162 ~~~~~~~~~---~~---~~~~~~~~~--~~~~~~~~~~~~~~~~~~---------~~~----~~~~~~~~~~P~l~i~g~ 220 (289)
...+...+. .. .+....... ...........+.+.+.. ++. ......+|++|+|+|+|+
T Consensus 228 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fd~~~t~~~~gf~~~~~yy~~~s~~~~L~~I~vPtLiI~g~ 307 (388)
T PLN02511 228 DKALAKALRKIFAKHALLFEGLGGEYNIPLVANAKTVRDFDDGLTRVSFGFKSVDAYYSNSSSSDSIKHVRVPLLCIQAA 307 (388)
T ss_pred HHHHHHHHHHHHHHHHHHHhhCCCccCHHHHHhCCCHHHHHHhhhhhcCCCCCHHHHHHHcCchhhhccCCCCeEEEEcC
Confidence 011111110 00 000000000 000000000001110000 000 011122479999999999
Q ss_pred CCCccChhhH-HHHHhhCCCcEEEEEcCCCcccc-cCchH------HHHHHHHHHHhhcCC
Q 022960 221 KDKMVPAEDA-LEFDKFIPNHKLHIIEGADHEFT-SHQDE------LASLVIQFIKANYQK 273 (289)
Q Consensus 221 ~D~~~~~~~~-~~~~~~~~~~~~~~~~~~gH~~~-~~~~~------~~~~i~~fl~~~~~~ 273 (289)
+|+++|.+.. ....+.++++++++++++||..+ +.++. +.+.+.+||+.....
T Consensus 308 dDpi~p~~~~~~~~~~~~p~~~l~~~~~gGH~~~~E~p~~~~~~~w~~~~i~~Fl~~~~~~ 368 (388)
T PLN02511 308 NDPIAPARGIPREDIKANPNCLLIVTPSGGHLGWVAGPEAPFGAPWTDPVVMEFLEALEEG 368 (388)
T ss_pred CCCcCCcccCcHhHHhcCCCEEEEECCCcceeccccCCCCCCCCccHHHHHHHHHHHHHHh
Confidence 9999998765 45677789999999999999955 44443 589999999887654
No 29
>PRK10349 carboxylesterase BioH; Provisional
Probab=99.97 E-value=5.8e-29 Score=192.25 Aligned_cols=214 Identities=17% Similarity=0.233 Sum_probs=138.8
Q ss_pred cCCC-cEEEEEcCCCCCCCCcchHHHHHHHHHcCccEEEEccccCCCCCCCccccchHHHHHHHHHHHHHHHhcCCceEE
Q 022960 42 TGSK-QLVIVCHGFQSTKDRIPMVNLAAALEREGISAFRFDFSGNGESEGSFLYGNYRREAEDLRAIVQDFCAKGRVITA 120 (289)
Q Consensus 42 ~~~~-~~iv~~hG~~~~~~~~~~~~~~~~l~~~G~~v~~~d~~G~G~s~~~~~~~~~~~~~~d~~~~i~~l~~~~~~~~~ 120 (289)
.|++ |+|||+||++++.. .|..+.+.|.+. |+|+++|+||||.|.... ..++.+.++++. .+ ..++++
T Consensus 9 ~G~g~~~ivllHG~~~~~~--~w~~~~~~L~~~-~~vi~~Dl~G~G~S~~~~-~~~~~~~~~~l~----~~---~~~~~~ 77 (256)
T PRK10349 9 KGQGNVHLVLLHGWGLNAE--VWRCIDEELSSH-FTLHLVDLPGFGRSRGFG-ALSLADMAEAVL----QQ---APDKAI 77 (256)
T ss_pred cCCCCCeEEEECCCCCChh--HHHHHHHHHhcC-CEEEEecCCCCCCCCCCC-CCCHHHHHHHHH----hc---CCCCeE
Confidence 3445 46999999999885 499999999876 999999999999997543 334444444433 22 567899
Q ss_pred EEEeChhHHHHHHHHHhCCC-ccEEEEeccCCccccc--cccc---ccchhHhhhhh---c---Ccccc---cccccccc
Q 022960 121 IIGHSKGGNAVLLYASKYND-ISIVINISGRFNLKRG--IEGR---LGLGYLQRIKQ---N---GFIDV---RNKKGKLE 185 (289)
Q Consensus 121 l~G~S~Gg~~a~~~a~~~p~-v~~~v~~~~~~~~~~~--~~~~---~~~~~~~~~~~---~---~~~~~---~~~~~~~~ 185 (289)
++||||||.+++.+|..+|+ |+++|++++....... .... ....+...+.. . .+... ........
T Consensus 78 lvGhS~Gg~ia~~~a~~~p~~v~~lili~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (256)
T PRK10349 78 WLGWSLGGLVASQIALTHPERVQALVTVASSPCFSARDEWPGIKPDVLAGFQQQLSDDFQRTVERFLALQTMGTETARQD 157 (256)
T ss_pred EEEECHHHHHHHHHHHhChHhhheEEEecCccceecCCCCCcccHHHHHHHHHHHHhchHHHHHHHHHHHHccCchHHHH
Confidence 99999999999999999999 9999999874332110 0000 00000000000 0 00000 00000000
Q ss_pred c----------cc-Chhhhhh---h-hccchhhhhcccccCceEEEEEeCCCCccChhhHHHHHhhCCCcEEEEEcCCCc
Q 022960 186 Y----------RV-TQESLMD---R-LSTDIHAACHMICQDCRVLTIHGTKDKMVPAEDALEFDKFIPNHKLHIIEGADH 250 (289)
Q Consensus 186 ~----------~~-~~~~~~~---~-~~~~~~~~~~~~~~~~P~l~i~g~~D~~~~~~~~~~~~~~~~~~~~~~~~~~gH 250 (289)
. .. ....+.. . ...+.... ..++++|+|+++|++|.++|.+.++.+.+.++++++.+++++||
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--l~~i~~P~lii~G~~D~~~~~~~~~~~~~~i~~~~~~~i~~~gH 235 (256)
T PRK10349 158 ARALKKTVLALPMPEVDVLNGGLEILKTVDLRQP--LQNVSMPFLRLYGYLDGLVPRKVVPMLDKLWPHSESYIFAKAAH 235 (256)
T ss_pred HHHHHHHhhccCCCcHHHHHHHHHHHHhCccHHH--HhhcCCCeEEEecCCCccCCHHHHHHHHHhCCCCeEEEeCCCCC
Confidence 0 00 0000000 0 00111111 12469999999999999999999999999999999999999999
Q ss_pred ccc-cCchHHHHHHHHHHH
Q 022960 251 EFT-SHQDELASLVIQFIK 268 (289)
Q Consensus 251 ~~~-~~~~~~~~~i~~fl~ 268 (289)
+++ +.++++++.+.+|-+
T Consensus 236 ~~~~e~p~~f~~~l~~~~~ 254 (256)
T PRK10349 236 APFISHPAEFCHLLVALKQ 254 (256)
T ss_pred CccccCHHHHHHHHHHHhc
Confidence 976 667889999998864
No 30
>PRK05077 frsA fermentation/respiration switch protein; Reviewed
Probab=99.97 E-value=5.1e-28 Score=196.66 Aligned_cols=237 Identities=16% Similarity=0.099 Sum_probs=158.3
Q ss_pred ccceeeEEeeCCCCceEEEEEeecC---CCcEEEEEcCCCCCCCCcchHHHHHHHHHcCccEEEEccccCCCCCCCcccc
Q 022960 19 VVQRRRVVIPNSHGEKLVGILHETG---SKQLVIVCHGFQSTKDRIPMVNLAAALEREGISAFRFDFSGNGESEGSFLYG 95 (289)
Q Consensus 19 ~~~~~~~~~~~~~g~~l~~~~~~~~---~~~~iv~~hG~~~~~~~~~~~~~~~~l~~~G~~v~~~d~~G~G~s~~~~~~~ 95 (289)
....+.+.++..+|.++.++++.|. +.|+||++||+++.... .|..+++.|+++||+|+++|+||+|.|.......
T Consensus 165 ~~~~e~v~i~~~~g~~l~g~l~~P~~~~~~P~Vli~gG~~~~~~~-~~~~~~~~La~~Gy~vl~~D~pG~G~s~~~~~~~ 243 (414)
T PRK05077 165 PGELKELEFPIPGGGPITGFLHLPKGDGPFPTVLVCGGLDSLQTD-YYRLFRDYLAPRGIAMLTIDMPSVGFSSKWKLTQ 243 (414)
T ss_pred CCceEEEEEEcCCCcEEEEEEEECCCCCCccEEEEeCCcccchhh-hHHHHHHHHHhCCCEEEEECCCCCCCCCCCCccc
Confidence 3457889999888888998877553 46777777776665432 4778899999999999999999999997542222
Q ss_pred chHHHHHHHHHHHHHHHhc---CCceEEEEEeChhHHHHHHHHHhCCC-ccEEEEeccCCcccccccccc---cchhHhh
Q 022960 96 NYRREAEDLRAIVQDFCAK---GRVITAIIGHSKGGNAVLLYASKYND-ISIVINISGRFNLKRGIEGRL---GLGYLQR 168 (289)
Q Consensus 96 ~~~~~~~d~~~~i~~l~~~---~~~~~~l~G~S~Gg~~a~~~a~~~p~-v~~~v~~~~~~~~~~~~~~~~---~~~~~~~ 168 (289)
+.. ....++++++... +.++++++|||+||++++.+|...|+ ++++|++++............ ...+...
T Consensus 244 d~~---~~~~avld~l~~~~~vd~~ri~l~G~S~GG~~Al~~A~~~p~ri~a~V~~~~~~~~~~~~~~~~~~~p~~~~~~ 320 (414)
T PRK05077 244 DSS---LLHQAVLNALPNVPWVDHTRVAAFGFRFGANVAVRLAYLEPPRLKAVACLGPVVHTLLTDPKRQQQVPEMYLDV 320 (414)
T ss_pred cHH---HHHHHHHHHHHhCcccCcccEEEEEEChHHHHHHHHHHhCCcCceEEEEECCccchhhcchhhhhhchHHHHHH
Confidence 222 2234566777655 56799999999999999999999886 999999998764211000000 0000000
Q ss_pred hhhcCcccccccccccccccChhhhhhhhccchhh--hhcccccCceEEEEEeCCCCccChhhHHHHHhhCCCcEEEEEc
Q 022960 169 IKQNGFIDVRNKKGKLEYRVTQESLMDRLSTDIHA--ACHMICQDCRVLTIHGTKDKMVPAEDALEFDKFIPNHKLHIIE 246 (289)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~P~l~i~g~~D~~~~~~~~~~~~~~~~~~~~~~~~ 246 (289)
+.. .+. . .......+...+...... .....++++|+|+++|++|+++|++.++.+.+..++.+++.++
T Consensus 321 la~-~lg-------~--~~~~~~~l~~~l~~~sl~~~~~l~~~i~~PvLiI~G~~D~ivP~~~a~~l~~~~~~~~l~~i~ 390 (414)
T PRK05077 321 LAS-RLG-------M--HDASDEALRVELNRYSLKVQGLLGRRCPTPMLSGYWKNDPFSPEEDSRLIASSSADGKLLEIP 390 (414)
T ss_pred HHH-HhC-------C--CCCChHHHHHHhhhccchhhhhhccCCCCcEEEEecCCCCCCCHHHHHHHHHhCCCCeEEEcc
Confidence 000 000 0 000111111111110000 0001246899999999999999999999999999999999999
Q ss_pred CCCcccccCchHHHHHHHHHHHhhc
Q 022960 247 GADHEFTSHQDELASLVIQFIKANY 271 (289)
Q Consensus 247 ~~gH~~~~~~~~~~~~i~~fl~~~~ 271 (289)
++ | .++.++++++.+.+||++.+
T Consensus 391 ~~-~-~~e~~~~~~~~i~~wL~~~l 413 (414)
T PRK05077 391 FK-P-VYRNFDKALQEISDWLEDRL 413 (414)
T ss_pred CC-C-ccCCHHHHHHHHHHHHHHHh
Confidence 86 3 23567899999999998765
No 31
>TIGR01250 pro_imino_pep_2 proline-specific peptidases, Bacillus coagulans-type subfamily. This model describes a subfamily of the alpha/beta fold family of hydrolases. Characterized members include prolinases (Pro-Xaa dipeptidase, EC 3.4.13.8), prolyl aminopeptidases (EC 3.4.11.5), and a leucyl aminopeptidase
Probab=99.96 E-value=4.3e-28 Score=190.75 Aligned_cols=234 Identities=21% Similarity=0.194 Sum_probs=149.4
Q ss_pred CCCceEEEEEee-cCCCcEEEEEcCCCCCCCCcchHHHHHHHHHcCccEEEEccccCCCCCCCcc---ccchHHHHHHHH
Q 022960 30 SHGEKLVGILHE-TGSKQLVIVCHGFQSTKDRIPMVNLAAALEREGISAFRFDFSGNGESEGSFL---YGNYRREAEDLR 105 (289)
Q Consensus 30 ~~g~~l~~~~~~-~~~~~~iv~~hG~~~~~~~~~~~~~~~~l~~~G~~v~~~d~~G~G~s~~~~~---~~~~~~~~~d~~ 105 (289)
.++..+.+.... ++++++||++||++++... +|..+...+.+.||+|+++|+||||.|..+.. ..+++.+++|+.
T Consensus 9 ~~~~~~~~~~~~~~~~~~~vl~~hG~~g~~~~-~~~~~~~~l~~~g~~vi~~d~~G~G~s~~~~~~~~~~~~~~~~~~~~ 87 (288)
T TIGR01250 9 VDGGYHLFTKTGGEGEKIKLLLLHGGPGMSHE-YLENLRELLKEEGREVIMYDQLGCGYSDQPDDSDELWTIDYFVDELE 87 (288)
T ss_pred CCCCeEEEEeccCCCCCCeEEEEcCCCCccHH-HHHHHHHHHHhcCCEEEEEcCCCCCCCCCCCcccccccHHHHHHHHH
Confidence 345555544443 3357899999998776643 46667777776699999999999999986532 256788889998
Q ss_pred HHHHHHHhcCCceEEEEEeChhHHHHHHHHHhCCC-ccEEEEeccCCccccccc------ccccchhHhhhhh---cC-c
Q 022960 106 AIVQDFCAKGRVITAIIGHSKGGNAVLLYASKYND-ISIVINISGRFNLKRGIE------GRLGLGYLQRIKQ---NG-F 174 (289)
Q Consensus 106 ~~i~~l~~~~~~~~~l~G~S~Gg~~a~~~a~~~p~-v~~~v~~~~~~~~~~~~~------~~~~~~~~~~~~~---~~-~ 174 (289)
++++.+ +.++++++||||||.+++.++..+|+ ++++|++++......... ..+.......+.. .. +
T Consensus 88 ~~~~~~---~~~~~~liG~S~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (288)
T TIGR01250 88 EVREKL---GLDKFYLLGHSWGGMLAQEYALKYGQHLKGLIISSMLDSAPEYVKELNRLRKELPPEVRAAIKRCEASGDY 164 (288)
T ss_pred HHHHHc---CCCcEEEEEeehHHHHHHHHHHhCccccceeeEecccccchHHHHHHHHHHhhcChhHHHHHHHHHhccCc
Confidence 888877 67789999999999999999999999 999999887543221100 0000000000000 00 0
Q ss_pred cc-----cccccc---ccccccChhhhhh-----------hhc-----------cchhhhhcccccCceEEEEEeCCCCc
Q 022960 175 ID-----VRNKKG---KLEYRVTQESLMD-----------RLS-----------TDIHAACHMICQDCRVLTIHGTKDKM 224 (289)
Q Consensus 175 ~~-----~~~~~~---~~~~~~~~~~~~~-----------~~~-----------~~~~~~~~~~~~~~P~l~i~g~~D~~ 224 (289)
.. ...... ............. .+. ..........++++|+++++|++|.+
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~lii~G~~D~~ 244 (288)
T TIGR01250 165 DNPEYQEAVEVFYHHLLCRTRKWPEALKHLKSGMNTNVYNIMQGPNEFTITGNLKDWDITDKLSEIKVPTLLTVGEFDTM 244 (288)
T ss_pred chHHHHHHHHHHHHHhhcccccchHHHHHHhhccCHHHHhcccCCccccccccccccCHHHHhhccCCCEEEEecCCCcc
Confidence 00 000000 0000000000000 000 00000011124689999999999985
Q ss_pred cChhhHHHHHhhCCCcEEEEEcCCCcccc-cCchHHHHHHHHHHH
Q 022960 225 VPAEDALEFDKFIPNHKLHIIEGADHEFT-SHQDELASLVIQFIK 268 (289)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~gH~~~-~~~~~~~~~i~~fl~ 268 (289)
+++..+.+.+.+++++++.++++||+++ ++++++.+.|.+||+
T Consensus 245 -~~~~~~~~~~~~~~~~~~~~~~~gH~~~~e~p~~~~~~i~~fl~ 288 (288)
T TIGR01250 245 -TPEAAREMQELIAGSRLVVFPDGSHMTMIEDPEVYFKLLSDFIR 288 (288)
T ss_pred -CHHHHHHHHHhccCCeEEEeCCCCCCcccCCHHHHHHHHHHHhC
Confidence 6788888999999999999999999965 677899999999974
No 32
>PLN02211 methyl indole-3-acetate methyltransferase
Probab=99.96 E-value=1.2e-27 Score=185.45 Aligned_cols=232 Identities=15% Similarity=0.144 Sum_probs=149.7
Q ss_pred CCceEEEEEeec-CCCcEEEEEcCCCCCCCCcchHHHHHHHHHcCccEEEEccccCCCCCCCcc-ccchHHHHHHHHHHH
Q 022960 31 HGEKLVGILHET-GSKQLVIVCHGFQSTKDRIPMVNLAAALEREGISAFRFDFSGNGESEGSFL-YGNYRREAEDLRAIV 108 (289)
Q Consensus 31 ~g~~l~~~~~~~-~~~~~iv~~hG~~~~~~~~~~~~~~~~l~~~G~~v~~~d~~G~G~s~~~~~-~~~~~~~~~d~~~~i 108 (289)
+|.++. +.++ +++|+|||+||++.+.. .|..+...|.+.||+|+++|+||||.|..... ..++++.++++.+++
T Consensus 5 ~~~~~~--~~~~~~~~p~vvliHG~~~~~~--~w~~~~~~L~~~g~~vi~~dl~g~G~s~~~~~~~~~~~~~~~~l~~~i 80 (273)
T PLN02211 5 NGEEVT--DMKPNRQPPHFVLIHGISGGSW--CWYKIRCLMENSGYKVTCIDLKSAGIDQSDADSVTTFDEYNKPLIDFL 80 (273)
T ss_pred cccccc--cccccCCCCeEEEECCCCCCcC--cHHHHHHHHHhCCCEEEEecccCCCCCCCCcccCCCHHHHHHHHHHHH
Confidence 455555 3335 67899999999999884 59999999998899999999999998754432 357778888888888
Q ss_pred HHHHhcCCceEEEEEeChhHHHHHHHHHhCCC-ccEEEEeccCCccccc-ccccccchh--Hhhhhh-----cCcccccc
Q 022960 109 QDFCAKGRVITAIIGHSKGGNAVLLYASKYND-ISIVINISGRFNLKRG-IEGRLGLGY--LQRIKQ-----NGFIDVRN 179 (289)
Q Consensus 109 ~~l~~~~~~~~~l~G~S~Gg~~a~~~a~~~p~-v~~~v~~~~~~~~~~~-~~~~~~~~~--~~~~~~-----~~~~~~~~ 179 (289)
+.+. ..++++|+||||||.++..++..+|+ |+++|++++....... ........+ ...... ........
T Consensus 81 ~~l~--~~~~v~lvGhS~GG~v~~~~a~~~p~~v~~lv~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (273)
T PLN02211 81 SSLP--ENEKVILVGHSAGGLSVTQAIHRFPKKICLAVYVAATMLKLGFQTDEDMKDGVPDLSEFGDVYELGFGLGPDQP 158 (273)
T ss_pred HhcC--CCCCEEEEEECchHHHHHHHHHhChhheeEEEEeccccCCCCCCHHHHHhccccchhhhccceeeeeccCCCCC
Confidence 7652 24689999999999999999999998 9999999774321100 000000000 000000 00000000
Q ss_pred cc---------cccccccChhhh----hhhhcc---chhhh----hccccc-CceEEEEEeCCCCccChhhHHHHHhhCC
Q 022960 180 KK---------GKLEYRVTQESL----MDRLST---DIHAA----CHMICQ-DCRVLTIHGTKDKMVPAEDALEFDKFIP 238 (289)
Q Consensus 180 ~~---------~~~~~~~~~~~~----~~~~~~---~~~~~----~~~~~~-~~P~l~i~g~~D~~~~~~~~~~~~~~~~ 238 (289)
.. ....+...+... ...... ..... ....++ ++|+++|.|++|..+|++..+.+.+.++
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vP~l~I~g~~D~~ip~~~~~~m~~~~~ 238 (273)
T PLN02211 159 PTSAIIKKEFRRKILYQMSPQEDSTLAAMLLRPGPILALRSARFEEETGDIDKVPRVYIKTLHDHVVKPEQQEAMIKRWP 238 (273)
T ss_pred CceeeeCHHHHHHHHhcCCCHHHHHHHHHhcCCcCccccccccccccccccCccceEEEEeCCCCCCCHHHHHHHHHhCC
Confidence 00 000000001000 000000 00000 000123 7899999999999999999999999999
Q ss_pred CcEEEEEcCCCcccc-cCchHHHHHHHHHHHh
Q 022960 239 NHKLHIIEGADHEFT-SHQDELASLVIQFIKA 269 (289)
Q Consensus 239 ~~~~~~~~~~gH~~~-~~~~~~~~~i~~fl~~ 269 (289)
+.+++.++ +||.++ +.|+++.+.|.++...
T Consensus 239 ~~~~~~l~-~gH~p~ls~P~~~~~~i~~~a~~ 269 (273)
T PLN02211 239 PSQVYELE-SDHSPFFSTPFLLFGLLIKAAAS 269 (273)
T ss_pred ccEEEEEC-CCCCccccCHHHHHHHHHHHHHH
Confidence 99999997 799965 7788999988887654
No 33
>PF12697 Abhydrolase_6: Alpha/beta hydrolase family; PDB: 3LLC_A 3A2N_E 3A2M_A 3A2L_A 3AFI_F 3C5V_A 3C5W_P 3E0X_A 2ZJF_A 3QYJ_A ....
Probab=99.96 E-value=5.4e-29 Score=188.98 Aligned_cols=206 Identities=29% Similarity=0.389 Sum_probs=141.5
Q ss_pred EEEEcCCCCCCCCcchHHHHHHHHHcCccEEEEccccCCCCCCCc--cccchHHHHHHHHHHHHHHHhcCCceEEEEEeC
Q 022960 48 VIVCHGFQSTKDRIPMVNLAAALEREGISAFRFDFSGNGESEGSF--LYGNYRREAEDLRAIVQDFCAKGRVITAIIGHS 125 (289)
Q Consensus 48 iv~~hG~~~~~~~~~~~~~~~~l~~~G~~v~~~d~~G~G~s~~~~--~~~~~~~~~~d~~~~i~~l~~~~~~~~~l~G~S 125 (289)
|||+||++++.. .|..+++.|+ +||+|+++|+||+|.|.... ...++.+.++|+.++++.+ +.++++++|||
T Consensus 1 vv~~hG~~~~~~--~~~~~~~~l~-~~~~v~~~d~~G~G~s~~~~~~~~~~~~~~~~~l~~~l~~~---~~~~~~lvG~S 74 (228)
T PF12697_consen 1 VVFLHGFGGSSE--SWDPLAEALA-RGYRVIAFDLPGHGRSDPPPDYSPYSIEDYAEDLAELLDAL---GIKKVILVGHS 74 (228)
T ss_dssp EEEE-STTTTGG--GGHHHHHHHH-TTSEEEEEECTTSTTSSSHSSGSGGSHHHHHHHHHHHHHHT---TTSSEEEEEET
T ss_pred eEEECCCCCCHH--HHHHHHHHHh-CCCEEEEEecCCccccccccccCCcchhhhhhhhhhccccc---ccccccccccc
Confidence 799999999995 4999999995 68999999999999998765 3567788889999998888 66789999999
Q ss_pred hhHHHHHHHHHhCCC-ccEEEEeccCCcccccc----cccccchhH-------hhhhhcCcccccccc-cccccccChhh
Q 022960 126 KGGNAVLLYASKYND-ISIVINISGRFNLKRGI----EGRLGLGYL-------QRIKQNGFIDVRNKK-GKLEYRVTQES 192 (289)
Q Consensus 126 ~Gg~~a~~~a~~~p~-v~~~v~~~~~~~~~~~~----~~~~~~~~~-------~~~~~~~~~~~~~~~-~~~~~~~~~~~ 192 (289)
+||.+++.++.++|+ |+++|++++........ .......+. ..+....+....... ...........
T Consensus 75 ~Gg~~a~~~a~~~p~~v~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (228)
T PF12697_consen 75 MGGMIALRLAARYPDRVKGLVLLSPPPPLPDSPSRSFGPSFIRRLLAWRSRSLRRLASRFFYRWFDGDEPEDLIRSSRRA 154 (228)
T ss_dssp HHHHHHHHHHHHSGGGEEEEEEESESSSHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHH
T ss_pred cccccccccccccccccccceeecccccccccccccccchhhhhhhhccccccccccccccccccccccccccccccccc
Confidence 999999999999998 99999999987543211 000000000 000000000000000 00000001111
Q ss_pred hhhhh-----ccchhhhhcccccCceEEEEEeCCCCccChhhHHHHHhhCCCcEEEEEcCCCcccc-cCchHHHH
Q 022960 193 LMDRL-----STDIHAACHMICQDCRVLTIHGTKDKMVPAEDALEFDKFIPNHKLHIIEGADHEFT-SHQDELAS 261 (289)
Q Consensus 193 ~~~~~-----~~~~~~~~~~~~~~~P~l~i~g~~D~~~~~~~~~~~~~~~~~~~~~~~~~~gH~~~-~~~~~~~~ 261 (289)
+...+ ..+...... ++++|+++++|++|.+++.+..+.+.+.+++++++.++++||+++ ++++++++
T Consensus 155 ~~~~~~~~~~~~~~~~~~~--~~~~pvl~i~g~~D~~~~~~~~~~~~~~~~~~~~~~~~~~gH~~~~~~p~~~~~ 227 (228)
T PF12697_consen 155 LAEYLRSNLWQADLSEALP--RIKVPVLVIHGEDDPIVPPESAEELADKLPNAELVVIPGAGHFLFLEQPDEVAE 227 (228)
T ss_dssp HHHHHHHHHHHHHHHHHHH--GSSSEEEEEEETTSSSSHHHHHHHHHHHSTTEEEEEETTSSSTHHHHSHHHHHH
T ss_pred ccccccccccccccccccc--ccCCCeEEeecCCCCCCCHHHHHHHHHHCCCCEEEEECCCCCccHHHCHHHHhc
Confidence 11111 111112222 458999999999999999999999999999999999999999965 66777665
No 34
>KOG4409 consensus Predicted hydrolase/acyltransferase (alpha/beta hydrolase superfamily) [General function prediction only]
Probab=99.96 E-value=1.2e-27 Score=180.69 Aligned_cols=235 Identities=17% Similarity=0.229 Sum_probs=144.5
Q ss_pred CCceEEEEEe--ecCCCcEEEEEcCCCCCCCCcchHHHHHHHHHcCccEEEEccccCCCCCCCccccchHHHHHHHHHHH
Q 022960 31 HGEKLVGILH--ETGSKQLVIVCHGFQSTKDRIPMVNLAAALEREGISAFRFDFSGNGESEGSFLYGNYRREAEDLRAIV 108 (289)
Q Consensus 31 ~g~~l~~~~~--~~~~~~~iv~~hG~~~~~~~~~~~~~~~~l~~~G~~v~~~d~~G~G~s~~~~~~~~~~~~~~d~~~~i 108 (289)
++..+...-. ++..++++|++||+|++.. +|-.-.+.|++ .++|+++|++|+|.|+.+.-..+.........+-|
T Consensus 74 ~~~~iw~~~~~~~~~~~~plVliHGyGAg~g--~f~~Nf~~La~-~~~vyaiDllG~G~SSRP~F~~d~~~~e~~fvesi 150 (365)
T KOG4409|consen 74 NGIEIWTITVSNESANKTPLVLIHGYGAGLG--LFFRNFDDLAK-IRNVYAIDLLGFGRSSRPKFSIDPTTAEKEFVESI 150 (365)
T ss_pred CCceeEEEeecccccCCCcEEEEeccchhHH--HHHHhhhhhhh-cCceEEecccCCCCCCCCCCCCCcccchHHHHHHH
Confidence 4544443322 2347889999999999884 47777788888 59999999999999998764444333333444444
Q ss_pred HHHH-hcCCceEEEEEeChhHHHHHHHHHhCCC-ccEEEEeccCCccccccc----ccccchhH----------------
Q 022960 109 QDFC-AKGRVITAIIGHSKGGNAVLLYASKYND-ISIVINISGRFNLKRGIE----GRLGLGYL---------------- 166 (289)
Q Consensus 109 ~~l~-~~~~~~~~l~G~S~Gg~~a~~~a~~~p~-v~~~v~~~~~~~~~~~~~----~~~~~~~~---------------- 166 (289)
+..+ +.++++.+|+|||+||++|..||.++|+ |+.+||++|+-....... ......+.
T Consensus 151 E~WR~~~~L~KmilvGHSfGGYLaa~YAlKyPerV~kLiLvsP~Gf~~~~~~~~~~~~~~~~w~~~~~~~~~~~nPl~~L 230 (365)
T KOG4409|consen 151 EQWRKKMGLEKMILVGHSFGGYLAAKYALKYPERVEKLILVSPWGFPEKPDSEPEFTKPPPEWYKALFLVATNFNPLALL 230 (365)
T ss_pred HHHHHHcCCcceeEeeccchHHHHHHHHHhChHhhceEEEecccccccCCCcchhhcCCChHHHhhhhhhhhcCCHHHHH
Confidence 4433 3489999999999999999999999999 999999998643332200 00001111
Q ss_pred -----------hhhhhcCcccccccccccc-----c-----ccChhhhhhhh-------ccchhhhhcccccCceEEEEE
Q 022960 167 -----------QRIKQNGFIDVRNKKGKLE-----Y-----RVTQESLMDRL-------STDIHAACHMICQDCRVLTIH 218 (289)
Q Consensus 167 -----------~~~~~~~~~~~~~~~~~~~-----~-----~~~~~~~~~~~-------~~~~~~~~~~~~~~~P~l~i~ 218 (289)
..+....+........... + .-..+.....+ ...........+.+||+++|+
T Consensus 231 R~~Gp~Gp~Lv~~~~~d~~~k~~~~~~ed~l~~YiY~~n~~~psgE~~fk~l~~~~g~Ar~Pm~~r~~~l~~~~pv~fiy 310 (365)
T KOG4409|consen 231 RLMGPLGPKLVSRLRPDRFRKFPSLIEEDFLHEYIYHCNAQNPSGETAFKNLFEPGGWARRPMIQRLRELKKDVPVTFIY 310 (365)
T ss_pred HhccccchHHHhhhhHHHHHhccccchhHHHHHHHHHhcCCCCcHHHHHHHHHhccchhhhhHHHHHHhhccCCCEEEEe
Confidence 0000000000000000000 0 00000000000 011111222224469999999
Q ss_pred eCCCCccChhhHHHHHhhC--CCcEEEEEcCCCcccc-cCchHHHHHHHHHHHh
Q 022960 219 GTKDKMVPAEDALEFDKFI--PNHKLHIIEGADHEFT-SHQDELASLVIQFIKA 269 (289)
Q Consensus 219 g~~D~~~~~~~~~~~~~~~--~~~~~~~~~~~gH~~~-~~~~~~~~~i~~fl~~ 269 (289)
|++|. ++.....++.+.+ ..++.++++++||..+ ++|+.+++.+..++++
T Consensus 311 G~~dW-mD~~~g~~~~~~~~~~~~~~~~v~~aGHhvylDnp~~Fn~~v~~~~~~ 363 (365)
T KOG4409|consen 311 GDRDW-MDKNAGLEVTKSLMKEYVEIIIVPGAGHHVYLDNPEFFNQIVLEECDK 363 (365)
T ss_pred cCccc-ccchhHHHHHHHhhcccceEEEecCCCceeecCCHHHHHHHHHHHHhc
Confidence 99995 4566666666543 3489999999999955 7788999999999875
No 35
>KOG1454 consensus Predicted hydrolase/acyltransferase (alpha/beta hydrolase superfamily) [General function prediction only]
Probab=99.96 E-value=1.1e-27 Score=187.90 Aligned_cols=222 Identities=23% Similarity=0.265 Sum_probs=144.3
Q ss_pred CCcEEEEEcCCCCCCCCcchHHHHHHHHHc-CccEEEEccccCCCCCC-Ccc-ccchHHHHHHHHHHHHHHHhcCCceEE
Q 022960 44 SKQLVIVCHGFQSTKDRIPMVNLAAALERE-GISAFRFDFSGNGESEG-SFL-YGNYRREAEDLRAIVQDFCAKGRVITA 120 (289)
Q Consensus 44 ~~~~iv~~hG~~~~~~~~~~~~~~~~l~~~-G~~v~~~d~~G~G~s~~-~~~-~~~~~~~~~d~~~~i~~l~~~~~~~~~ 120 (289)
.+++||++||++++.. .|+.....|.+. |+.|+++|++|+|.++. +.. .++...+++-+..++... ..++++
T Consensus 57 ~~~pvlllHGF~~~~~--~w~~~~~~L~~~~~~~v~aiDl~G~g~~s~~~~~~~y~~~~~v~~i~~~~~~~---~~~~~~ 131 (326)
T KOG1454|consen 57 DKPPVLLLHGFGASSF--SWRRVVPLLSKAKGLRVLAIDLPGHGYSSPLPRGPLYTLRELVELIRRFVKEV---FVEPVS 131 (326)
T ss_pred CCCcEEEeccccCCcc--cHhhhccccccccceEEEEEecCCCCcCCCCCCCCceehhHHHHHHHHHHHhh---cCcceE
Confidence 6899999999999774 599999999887 69999999999995443 332 244455555555555544 666799
Q ss_pred EEEeChhHHHHHHHHHhCCC-ccEEE---EeccCCcccccccccccchhHhhhhhcCcc------cc------------c
Q 022960 121 IIGHSKGGNAVLLYASKYND-ISIVI---NISGRFNLKRGIEGRLGLGYLQRIKQNGFI------DV------------R 178 (289)
Q Consensus 121 l~G~S~Gg~~a~~~a~~~p~-v~~~v---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~------------~ 178 (289)
++|||+||.+|+.+|+.+|+ |+++| ++++.......................... .. .
T Consensus 132 lvghS~Gg~va~~~Aa~~P~~V~~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~ 211 (326)
T KOG1454|consen 132 LVGHSLGGIVALKAAAYYPETVDSLVLLDLLGPPVYSTPKGIKGLRRLLDKFLSALELLIPLSLTEPVRLVSEGLLRCLK 211 (326)
T ss_pred EEEeCcHHHHHHHHHHhCcccccceeeecccccccccCCcchhHHHHhhhhhccHhhhcCccccccchhheeHhhhccee
Confidence 99999999999999999999 99999 565544332222111111000000000000 00 0
Q ss_pred c--cccccc-------------cccChhhhhhhh---cc-chhhhhccccc-CceEEEEEeCCCCccChhhHHHHHhhCC
Q 022960 179 N--KKGKLE-------------YRVTQESLMDRL---ST-DIHAACHMICQ-DCRVLTIHGTKDKMVPAEDALEFDKFIP 238 (289)
Q Consensus 179 ~--~~~~~~-------------~~~~~~~~~~~~---~~-~~~~~~~~~~~-~~P~l~i~g~~D~~~~~~~~~~~~~~~~ 238 (289)
. ...... ...........+ .. +........++ ++|+|+++|++|+++|.+.++.+.+.++
T Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~pvlii~G~~D~~~p~~~~~~~~~~~p 291 (326)
T KOG1454|consen 212 VVYTDPSRLLEKLLHLLSRPVKEHFHRDARLSLFLELLGFDENLLSLIKKIWKCPVLIIWGDKDQIVPLELAEELKKKLP 291 (326)
T ss_pred eeccccccchhhhhhheecccccchhhhheeeEEEeccCccchHHHhhccccCCceEEEEcCcCCccCHHHHHHHHhhCC
Confidence 0 000000 000000000000 00 00111111133 4999999999999999999999999999
Q ss_pred CcEEEEEcCCCcccc-cCchHHHHHHHHHHHhh
Q 022960 239 NHKLHIIEGADHEFT-SHQDELASLVIQFIKAN 270 (289)
Q Consensus 239 ~~~~~~~~~~gH~~~-~~~~~~~~~i~~fl~~~ 270 (289)
++++++++++||.++ +.|+++++.|..|+...
T Consensus 292 n~~~~~I~~~gH~~h~e~Pe~~~~~i~~Fi~~~ 324 (326)
T KOG1454|consen 292 NAELVEIPGAGHLPHLERPEEVAALLRSFIARL 324 (326)
T ss_pred CceEEEeCCCCcccccCCHHHHHHHHHHHHHHh
Confidence 999999999999987 56789999999999865
No 36
>TIGR01607 PST-A Plasmodium subtelomeric family (PST-A). These genes are preferentially located in the subtelomeric regions of the chromosomes of both P. falciparum and P. yoelii.
Probab=99.96 E-value=2.4e-27 Score=188.48 Aligned_cols=242 Identities=22% Similarity=0.294 Sum_probs=157.8
Q ss_pred eeCCCCceEEEEEeecC-CCcEEEEEcCCCCCCCCcc------------------------hHHHHHHHHHcCccEEEEc
Q 022960 27 IPNSHGEKLVGILHETG-SKQLVIVCHGFQSTKDRIP------------------------MVNLAAALEREGISAFRFD 81 (289)
Q Consensus 27 ~~~~~g~~l~~~~~~~~-~~~~iv~~hG~~~~~~~~~------------------------~~~~~~~l~~~G~~v~~~d 81 (289)
+.+.||..|+++.+.+. ++.+|+++||++.+....+ ...+++.|.++||.|+++|
T Consensus 2 ~~~~~g~~l~~~~~~~~~~kg~v~i~HG~~eh~~~~~~~~~~~~~~~~~~~~~~~~ry~~y~~~~~~~l~~~G~~V~~~D 81 (332)
T TIGR01607 2 FRNKDGLLLKTYSWIVKNAIGIIVLIHGLKSHLRLQFLKINAKIVNNDRAVLIDTDNYYIYKDSWIENFNKNGYSVYGLD 81 (332)
T ss_pred ccCCCCCeEEEeeeeccCCeEEEEEECCCchhhhhhhhhcCcccCCCCeeEEEcCCcceEeeHHHHHHHHHCCCcEEEec
Confidence 45678999988877664 6789999999999885211 1467999999999999999
Q ss_pred cccCCCCCCCc----cccchHHHHHHHHHHHHHHHh-------------------c-C-CceEEEEEeChhHHHHHHHHH
Q 022960 82 FSGNGESEGSF----LYGNYRREAEDLRAIVQDFCA-------------------K-G-RVITAIIGHSKGGNAVLLYAS 136 (289)
Q Consensus 82 ~~G~G~s~~~~----~~~~~~~~~~d~~~~i~~l~~-------------------~-~-~~~~~l~G~S~Gg~~a~~~a~ 136 (289)
+||||.|.+.. ...++++.++|+.++++.+++ . . ..+++|+||||||.+++.++.
T Consensus 82 ~rGHG~S~~~~~~~g~~~~~~~~v~Dl~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~GhSmGg~i~~~~~~ 161 (332)
T TIGR01607 82 LQGHGESDGLQNLRGHINCFDDLVYDVIQYMNRINDSIILENETKSDDESYDIVNTKENRLPMYIIGLSMGGNIALRLLE 161 (332)
T ss_pred ccccCCCccccccccchhhHHHHHHHHHHHHHHhhhhhccccccccccccccccccccCCCceeEeeccCccHHHHHHHH
Confidence 99999988542 124788889999999998754 1 1 347999999999999999887
Q ss_pred hCC---------CccEEEEeccCCccccccc------ccccchhHh---hhhhc-Cccc--cccc---------cccccc
Q 022960 137 KYN---------DISIVINISGRFNLKRGIE------GRLGLGYLQ---RIKQN-GFID--VRNK---------KGKLEY 186 (289)
Q Consensus 137 ~~p---------~v~~~v~~~~~~~~~~~~~------~~~~~~~~~---~~~~~-~~~~--~~~~---------~~~~~~ 186 (289)
.++ .++++|+++|.+....... ......... .+... .... .... .....+
T Consensus 162 ~~~~~~~~~~~~~i~g~i~~s~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~Dp~~~ 241 (332)
T TIGR01607 162 LLGKSNENNDKLNIKGCISLSGMISIKSVGSDDSFKFKYFYLPVMNFMSRVFPTFRISKKIRYEKSPYVNDIIKFDKFRY 241 (332)
T ss_pred HhccccccccccccceEEEeccceEEecccCCCcchhhhhHHHHHHHHHHHCCcccccCccccccChhhhhHHhcCcccc
Confidence 542 3889999998764321100 000000110 01000 0000 0000 000000
Q ss_pred --ccChhhhhhhhccc--hhhhhcccccCceEEEEEeCCCCccChhhHHHHHhhC--CCcEEEEEcCCCcccccC--chH
Q 022960 187 --RVTQESLMDRLSTD--IHAACHMICQDCRVLTIHGTKDKMVPAEDALEFDKFI--PNHKLHIIEGADHEFTSH--QDE 258 (289)
Q Consensus 187 --~~~~~~~~~~~~~~--~~~~~~~~~~~~P~l~i~g~~D~~~~~~~~~~~~~~~--~~~~~~~~~~~gH~~~~~--~~~ 258 (289)
......+...+... .......++.++|+|+++|++|.+++++.++.+++.. ++++++++++++|.++.+ .++
T Consensus 242 ~~~~s~~~~~~l~~~~~~~~~~~~~i~~~~P~Lii~G~~D~vv~~~~~~~~~~~~~~~~~~l~~~~g~~H~i~~E~~~~~ 321 (332)
T TIGR01607 242 DGGITFNLASELIKATDTLDCDIDYIPKDIPILFIHSKGDCVCSYEGTVSFYNKLSISNKELHTLEDMDHVITIEPGNEE 321 (332)
T ss_pred CCcccHHHHHHHHHHHHHHHhhHhhCCCCCCEEEEEeCCCCccCHHHHHHHHHhccCCCcEEEEECCCCCCCccCCCHHH
Confidence 00111111111110 1111222233789999999999999999999988765 468999999999997754 367
Q ss_pred HHHHHHHHHH
Q 022960 259 LASLVIQFIK 268 (289)
Q Consensus 259 ~~~~i~~fl~ 268 (289)
+.+.|.+||+
T Consensus 322 v~~~i~~wL~ 331 (332)
T TIGR01607 322 VLKKIIEWIS 331 (332)
T ss_pred HHHHHHHHhh
Confidence 9999999985
No 37
>PRK07581 hypothetical protein; Validated
Probab=99.96 E-value=4.7e-28 Score=194.40 Aligned_cols=235 Identities=18% Similarity=0.155 Sum_probs=145.6
Q ss_pred CCceEEEEEeec---CCCcEEEEEcCCCCCCCCcchHHHH---HHHHHcCccEEEEccccCCCCCCCcc---ccchH---
Q 022960 31 HGEKLVGILHET---GSKQLVIVCHGFQSTKDRIPMVNLA---AALEREGISAFRFDFSGNGESEGSFL---YGNYR--- 98 (289)
Q Consensus 31 ~g~~l~~~~~~~---~~~~~iv~~hG~~~~~~~~~~~~~~---~~l~~~G~~v~~~d~~G~G~s~~~~~---~~~~~--- 98 (289)
+|.+++|...++ +..|+||++||++++... |..+. +.|...+|+|+++|+||||.|+.+.. ..+++
T Consensus 24 ~~~~l~y~~~G~~~~~~~~~vll~~~~~~~~~~--~~~~~~~~~~l~~~~~~vi~~D~~G~G~S~~~~~~~~~~~~~~~~ 101 (339)
T PRK07581 24 PDARLAYKTYGTLNAAKDNAILYPTWYSGTHQD--NEWLIGPGRALDPEKYFIIIPNMFGNGLSSSPSNTPAPFNAARFP 101 (339)
T ss_pred CCceEEEEecCccCCCCCCEEEEeCCCCCCccc--chhhccCCCccCcCceEEEEecCCCCCCCCCCCCCCCCCCCCCCC
Confidence 566777665554 244667777777766543 44332 35655579999999999999975432 12222
Q ss_pred --HHHHHHHH----HHHHHHhcCCceE-EEEEeChhHHHHHHHHHhCCC-ccEEEEeccCCcccccccc-----------
Q 022960 99 --REAEDLRA----IVQDFCAKGRVIT-AIIGHSKGGNAVLLYASKYND-ISIVINISGRFNLKRGIEG----------- 159 (289)
Q Consensus 99 --~~~~d~~~----~i~~l~~~~~~~~-~l~G~S~Gg~~a~~~a~~~p~-v~~~v~~~~~~~~~~~~~~----------- 159 (289)
..++|+.+ +++.+ +++++ +|+||||||.+|+.+|.++|+ |+++|++++..........
T Consensus 102 ~~~~~~~~~~~~~~l~~~l---gi~~~~~lvG~S~GG~va~~~a~~~P~~V~~Lvli~~~~~~~~~~~~~~~~~~~~l~~ 178 (339)
T PRK07581 102 HVTIYDNVRAQHRLLTEKF---GIERLALVVGWSMGAQQTYHWAVRYPDMVERAAPIAGTAKTTPHNFVFLEGLKAALTA 178 (339)
T ss_pred ceeHHHHHHHHHHHHHHHh---CCCceEEEEEeCHHHHHHHHHHHHCHHHHhhheeeecCCCCCHHHHHHHHHHHHHHHh
Confidence 24566665 44555 88894 799999999999999999999 9999999765432110000
Q ss_pred --cc-----c-----------chhH-----hhhhhcC-ccccccc--cc-------ccccccChhhhhhhh---c-----
Q 022960 160 --RL-----G-----------LGYL-----QRIKQNG-FIDVRNK--KG-------KLEYRVTQESLMDRL---S----- 198 (289)
Q Consensus 160 --~~-----~-----------~~~~-----~~~~~~~-~~~~~~~--~~-------~~~~~~~~~~~~~~~---~----- 198 (289)
.. . ..+. ....... +...... .. ..............+ .
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 258 (339)
T PRK07581 179 DPAFNGGWYAEPPERGLRAHARVYAGWGFSQAFYRQELWRAMGYASLEDFLVGFWEGNFLPRDPNNLLAMLWTWQRGDIS 258 (339)
T ss_pred CCCCCCCCCCCcHHHHHHHHHHHHHHHHhHHHHHHhhhccccChhhHHHHHHHHHHHhhcccCcccHHHHHHHhhhcccc
Confidence 00 0 0000 0000000 0000000 00 000000000011100 0
Q ss_pred ------cchhhhhcccccCceEEEEEeCCCCccChhhHHHHHhhCCCcEEEEEcC-CCcccc-cCchHHHHHHHHHHHhh
Q 022960 199 ------TDIHAACHMICQDCRVLTIHGTKDKMVPAEDALEFDKFIPNHKLHIIEG-ADHEFT-SHQDELASLVIQFIKAN 270 (289)
Q Consensus 199 ------~~~~~~~~~~~~~~P~l~i~g~~D~~~~~~~~~~~~~~~~~~~~~~~~~-~gH~~~-~~~~~~~~~i~~fl~~~ 270 (289)
.+... ...++++|+|+|+|++|.++|++.++.+.+.+++++++++++ +||..+ +++++++..|.+||++.
T Consensus 259 ~~~~~~~d~~~--~L~~I~~PtLvI~G~~D~~~p~~~~~~l~~~ip~a~l~~i~~~~GH~~~~~~~~~~~~~~~~~~~~~ 336 (339)
T PRK07581 259 RNPAYGGDLAA--ALGSITAKTFVMPISTDLYFPPEDCEAEAALIPNAELRPIESIWGHLAGFGQNPADIAFIDAALKEL 336 (339)
T ss_pred cCcccCCCHHH--HHhcCCCCEEEEEeCCCCCCCHHHHHHHHHhCCCCeEEEeCCCCCccccccCcHHHHHHHHHHHHHH
Confidence 01111 122468999999999999999999999999999999999999 899855 77899999999999987
Q ss_pred cC
Q 022960 271 YQ 272 (289)
Q Consensus 271 ~~ 272 (289)
+.
T Consensus 337 ~~ 338 (339)
T PRK07581 337 LA 338 (339)
T ss_pred Hh
Confidence 64
No 38
>PRK11126 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase; Provisional
Probab=99.96 E-value=9.4e-28 Score=184.11 Aligned_cols=209 Identities=17% Similarity=0.236 Sum_probs=136.4
Q ss_pred CcEEEEEcCCCCCCCCcchHHHHHHHHHcCccEEEEccccCCCCCCCccccchHHHHHHHHHHHHHHHhcCCceEEEEEe
Q 022960 45 KQLVIVCHGFQSTKDRIPMVNLAAALEREGISAFRFDFSGNGESEGSFLYGNYRREAEDLRAIVQDFCAKGRVITAIIGH 124 (289)
Q Consensus 45 ~~~iv~~hG~~~~~~~~~~~~~~~~l~~~G~~v~~~d~~G~G~s~~~~~~~~~~~~~~d~~~~i~~l~~~~~~~~~l~G~ 124 (289)
+|+|||+||++++.. .|..+.+.| + +|+|+++|+||||.|..+.. .++..+++|+.++++.+ +.++++++||
T Consensus 2 ~p~vvllHG~~~~~~--~w~~~~~~l-~-~~~vi~~D~~G~G~S~~~~~-~~~~~~~~~l~~~l~~~---~~~~~~lvG~ 73 (242)
T PRK11126 2 LPWLVFLHGLLGSGQ--DWQPVGEAL-P-DYPRLYIDLPGHGGSAAISV-DGFADVSRLLSQTLQSY---NILPYWLVGY 73 (242)
T ss_pred CCEEEEECCCCCChH--HHHHHHHHc-C-CCCEEEecCCCCCCCCCccc-cCHHHHHHHHHHHHHHc---CCCCeEEEEE
Confidence 578999999999985 499999988 3 69999999999999986543 47788899999999877 7789999999
Q ss_pred ChhHHHHHHHHHhCC-C-ccEEEEeccCCccccccc---ccc-cchhHhhhhhcCcc------------ccccccccc--
Q 022960 125 SKGGNAVLLYASKYN-D-ISIVINISGRFNLKRGIE---GRL-GLGYLQRIKQNGFI------------DVRNKKGKL-- 184 (289)
Q Consensus 125 S~Gg~~a~~~a~~~p-~-v~~~v~~~~~~~~~~~~~---~~~-~~~~~~~~~~~~~~------------~~~~~~~~~-- 184 (289)
||||.+|+.++.++| + |++++++++......... ... ...+...+...... .........
T Consensus 74 S~Gg~va~~~a~~~~~~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (242)
T PRK11126 74 SLGGRIAMYYACQGLAGGLCGLIVEGGNPGLQNAEERQARWQNDRQWAQRFRQEPLEQVLADWYQQPVFASLNAEQRQQL 153 (242)
T ss_pred CHHHHHHHHHHHhCCcccccEEEEeCCCCCCCCHHHHHHHHhhhHHHHHHhccCcHHHHHHHHHhcchhhccCccHHHHH
Confidence 999999999999985 4 999999886643221100 000 00011100000000 000000000
Q ss_pred ---ccccChhhhhhhh-------ccchhhhhcccccCceEEEEEeCCCCccChhhHHHHHhhCCCcEEEEEcCCCcccc-
Q 022960 185 ---EYRVTQESLMDRL-------STDIHAACHMICQDCRVLTIHGTKDKMVPAEDALEFDKFIPNHKLHIIEGADHEFT- 253 (289)
Q Consensus 185 ---~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~P~l~i~g~~D~~~~~~~~~~~~~~~~~~~~~~~~~~gH~~~- 253 (289)
............+ ..+... ...++++|+++++|++|..+. .+.+. .+++++.++++||+++
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~l~~i~~P~lii~G~~D~~~~-----~~~~~-~~~~~~~i~~~gH~~~~ 225 (242)
T PRK11126 154 VAKRSNNNGAAVAAMLEATSLAKQPDLRP--ALQALTFPFYYLCGERDSKFQ-----ALAQQ-LALPLHVIPNAGHNAHR 225 (242)
T ss_pred HHhcccCCHHHHHHHHHhcCcccCCcHHH--HhhccCCCeEEEEeCCcchHH-----HHHHH-hcCeEEEeCCCCCchhh
Confidence 0000000000000 001111 112568999999999998652 22333 3789999999999976
Q ss_pred cCchHHHHHHHHHHHh
Q 022960 254 SHQDELASLVIQFIKA 269 (289)
Q Consensus 254 ~~~~~~~~~i~~fl~~ 269 (289)
++++++++.|.+|+++
T Consensus 226 e~p~~~~~~i~~fl~~ 241 (242)
T PRK11126 226 ENPAAFAASLAQILRL 241 (242)
T ss_pred hChHHHHHHHHHHHhh
Confidence 7788999999999975
No 39
>PRK08775 homoserine O-acetyltransferase; Provisional
Probab=99.96 E-value=5.8e-28 Score=193.77 Aligned_cols=236 Identities=16% Similarity=0.169 Sum_probs=148.1
Q ss_pred CCCceEEEEEeecCCCcEEEEEcCCCCCCCC----------cchHHHHH---HHHHcCccEEEEccccCCCCCCCccccc
Q 022960 30 SHGEKLVGILHETGSKQLVIVCHGFQSTKDR----------IPMVNLAA---ALEREGISAFRFDFSGNGESEGSFLYGN 96 (289)
Q Consensus 30 ~~g~~l~~~~~~~~~~~~iv~~hG~~~~~~~----------~~~~~~~~---~l~~~G~~v~~~d~~G~G~s~~~~~~~~ 96 (289)
.+|.+++|...+++ ++++||+||+.++... .+|..+.. .|...+|+|+++|+||||.|... ..+
T Consensus 43 ~~~~~l~y~~~G~~-~~p~vll~g~~~~~~~~~~~~~~~~~~~w~~~v~~~~~L~~~~~~Vi~~Dl~G~g~s~~~--~~~ 119 (343)
T PRK08775 43 LEDLRLRYELIGPA-GAPVVFVAGGISAHRHVAATATFPEKGWWEGLVGSGRALDPARFRLLAFDFIGADGSLDV--PID 119 (343)
T ss_pred CCCceEEEEEeccC-CCCEEEEecCCCcccccccccCCCCCCcchhccCCCCccCccccEEEEEeCCCCCCCCCC--CCC
Confidence 46777776555433 3356666666665431 14777775 56434699999999999988532 345
Q ss_pred hHHHHHHHHHHHHHHHhcCCceE-EEEEeChhHHHHHHHHHhCCC-ccEEEEeccCCccccccccccc--ch--------
Q 022960 97 YRREAEDLRAIVQDFCAKGRVIT-AIIGHSKGGNAVLLYASKYND-ISIVINISGRFNLKRGIEGRLG--LG-------- 164 (289)
Q Consensus 97 ~~~~~~d~~~~i~~l~~~~~~~~-~l~G~S~Gg~~a~~~a~~~p~-v~~~v~~~~~~~~~~~~~~~~~--~~-------- 164 (289)
..+.++|+.++++.+ +.+++ +|+||||||++|+.+|.++|+ |+++|++++............. ..
T Consensus 120 ~~~~a~dl~~ll~~l---~l~~~~~lvG~SmGG~vA~~~A~~~P~~V~~LvLi~s~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (343)
T PRK08775 120 TADQADAIALLLDAL---GIARLHAFVGYSYGALVGLQFASRHPARVRTLVVVSGAHRAHPYAAAWRALQRRAVALGQLQ 196 (343)
T ss_pred HHHHHHHHHHHHHHc---CCCcceEEEEECHHHHHHHHHHHHChHhhheEEEECccccCCHHHHHHHHHHHHHHHcCCCC
Confidence 677899999999988 77664 799999999999999999999 9999999875432211000000 00
Q ss_pred --------hHhhh--h-hcC---ccccccccccc---ccccChh-----------------hhhhhhccchhhhhccccc
Q 022960 165 --------YLQRI--K-QNG---FIDVRNKKGKL---EYRVTQE-----------------SLMDRLSTDIHAACHMICQ 210 (289)
Q Consensus 165 --------~~~~~--~-~~~---~~~~~~~~~~~---~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~ 210 (289)
..... . ... +.......... ....... .+...............++
T Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~I 276 (343)
T PRK08775 197 CAEKHGLALARQLAMLSYRTPEEFEERFDAPPEVINGRVRVAAEDYLDAAGAQYVARTPVNAYLRLSESIDLHRVDPEAI 276 (343)
T ss_pred CCchhHHHHHHHHHHHHcCCHHHHHHHhCCCccccCCCccchHHHHHHHHHHHHHHhcChhHHHHHHHHHhhcCCChhcC
Confidence 00000 0 000 00000000000 0000000 0000000000000112356
Q ss_pred CceEEEEEeCCCCccChhhHHHHHhhC-CCcEEEEEcC-CCcccc-cCchHHHHHHHHHHHhhc
Q 022960 211 DCRVLTIHGTKDKMVPAEDALEFDKFI-PNHKLHIIEG-ADHEFT-SHQDELASLVIQFIKANY 271 (289)
Q Consensus 211 ~~P~l~i~g~~D~~~~~~~~~~~~~~~-~~~~~~~~~~-~gH~~~-~~~~~~~~~i~~fl~~~~ 271 (289)
++|+|+++|++|.++|++..+.+.+.+ ++++++++++ +||..+ ++++++++.|.+||++.-
T Consensus 277 ~~PtLvi~G~~D~~~p~~~~~~~~~~i~p~a~l~~i~~~aGH~~~lE~Pe~~~~~l~~FL~~~~ 340 (343)
T PRK08775 277 RVPTVVVAVEGDRLVPLADLVELAEGLGPRGSLRVLRSPYGHDAFLKETDRIDAILTTALRSTG 340 (343)
T ss_pred CCCeEEEEeCCCEeeCHHHHHHHHHHcCCCCeEEEEeCCccHHHHhcCHHHHHHHHHHHHHhcc
Confidence 899999999999999999999999887 6899999985 999965 788999999999997653
No 40
>TIGR01249 pro_imino_pep_1 proline iminopeptidase, Neisseria-type subfamily. This model represents one of two related families of proline iminopeptidase in the alpha/beta fold hydrolase family. The fine specificities of the various members, including both the range of short peptides from which proline can be removed and whether other amino acids such as alanine can be also removed, may vary among members.
Probab=99.96 E-value=5.2e-27 Score=185.50 Aligned_cols=238 Identities=14% Similarity=0.136 Sum_probs=150.6
Q ss_pred EEeeCCCCceEEEEEeecCCCcEEEEEcCCCCCCCCcchHHHHHHHHHcCccEEEEccccCCCCCCCcc--ccchHHHHH
Q 022960 25 VVIPNSHGEKLVGILHETGSKQLVIVCHGFQSTKDRIPMVNLAAALEREGISAFRFDFSGNGESEGSFL--YGNYRREAE 102 (289)
Q Consensus 25 ~~~~~~~g~~l~~~~~~~~~~~~iv~~hG~~~~~~~~~~~~~~~~l~~~G~~v~~~d~~G~G~s~~~~~--~~~~~~~~~ 102 (289)
..+...+|.++++...++.++++||++||++++... ..+...+...+|+|+++|+||||.|..... ..+..+.++
T Consensus 7 ~~~~~~~~~~l~y~~~g~~~~~~lvllHG~~~~~~~---~~~~~~~~~~~~~vi~~D~~G~G~S~~~~~~~~~~~~~~~~ 83 (306)
T TIGR01249 7 GYLNVSDNHQLYYEQSGNPDGKPVVFLHGGPGSGTD---PGCRRFFDPETYRIVLFDQRGCGKSTPHACLEENTTWDLVA 83 (306)
T ss_pred CeEEcCCCcEEEEEECcCCCCCEEEEECCCCCCCCC---HHHHhccCccCCEEEEECCCCCCCCCCCCCcccCCHHHHHH
Confidence 355666788898766655557889999998877632 234445555679999999999999986542 335567788
Q ss_pred HHHHHHHHHHhcCCceEEEEEeChhHHHHHHHHHhCCC-ccEEEEeccCCccccccc-------ccccchhHhhhh----
Q 022960 103 DLRAIVQDFCAKGRVITAIIGHSKGGNAVLLYASKYND-ISIVINISGRFNLKRGIE-------GRLGLGYLQRIK---- 170 (289)
Q Consensus 103 d~~~~i~~l~~~~~~~~~l~G~S~Gg~~a~~~a~~~p~-v~~~v~~~~~~~~~~~~~-------~~~~~~~~~~~~---- 170 (289)
|+..+++++ +.++++++||||||.+++.++.++|+ |+++|++++......... ..........+.
T Consensus 84 dl~~l~~~l---~~~~~~lvG~S~GG~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (306)
T TIGR01249 84 DIEKLREKL---GIKNWLVFGGSWGSTLALAYAQTHPEVVTGLVLRGIFLLREKEWSWFYEGGASMIYPDAWQRFMDSIP 160 (306)
T ss_pred HHHHHHHHc---CCCCEEEEEECHHHHHHHHHHHHChHhhhhheeeccccCCHHHHHHHHhcchhhhCHHHHHHHhhhCC
Confidence 888888877 67789999999999999999999998 999999987543211000 000000000000
Q ss_pred hc----Ccc----c-ccccc---------------ccccccc---------Ch---hhhhhh-----hccchhh-----h
Q 022960 171 QN----GFI----D-VRNKK---------------GKLEYRV---------TQ---ESLMDR-----LSTDIHA-----A 204 (289)
Q Consensus 171 ~~----~~~----~-~~~~~---------------~~~~~~~---------~~---~~~~~~-----~~~~~~~-----~ 204 (289)
.. .+. . ..... ....... .. ..+... ....... .
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (306)
T TIGR01249 161 ENERNEQLVNAYHDRLQSGDEETKLAAAKAWVDWESTTLLRPINEIVSTAEDFKFSLAFARLENHYFVNKGFLDVENFIL 240 (306)
T ss_pred hhhhhccHHHHHHHHccCCCHHHHHHHHHHHHHHhChhhcCCCCCccccccchHHHHHHHHHHHhHHHHhchhcCchHHH
Confidence 00 000 0 00000 0000000 00 000000 0000000 0
Q ss_pred hccccc-CceEEEEEeCCCCccChhhHHHHHhhCCCcEEEEEcCCCcccccCchHHHHHHHHHHHhh
Q 022960 205 CHMICQ-DCRVLTIHGTKDKMVPAEDALEFDKFIPNHKLHIIEGADHEFTSHQDELASLVIQFIKAN 270 (289)
Q Consensus 205 ~~~~~~-~~P~l~i~g~~D~~~~~~~~~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~i~~fl~~~ 270 (289)
....++ ++|+|+++|++|.++|.+.++.+++.++++++++++++||..+ .++..+.|.+|+.+.
T Consensus 241 ~~~~~i~~~P~lii~g~~D~~~p~~~~~~~~~~~~~~~~~~~~~~gH~~~--~~~~~~~i~~~~~~~ 305 (306)
T TIGR01249 241 DNISKIRNIPTYIVHGRYDLCCPLQSAWALHKAFPEAELKVTNNAGHSAF--DPNNLAALVHALETY 305 (306)
T ss_pred HhhhhccCCCeEEEecCCCCCCCHHHHHHHHHhCCCCEEEEECCCCCCCC--ChHHHHHHHHHHHHh
Confidence 011134 5899999999999999999999999999999999999999975 345667777777654
No 41
>TIGR01738 bioH putative pimeloyl-BioC--CoA transferase BioH. This CoA-binding enzyme is required for the production of pimeloyl-coenzyme A, the substrate of the BioF protein early in the biosynthesis of biotin. Its exact function is unknown, but is proposed in ref 2. This enzyme belongs to the alpha/beta hydrolase fold family (pfam model pfam00561). Members of this family are restricted to the Proteobacteria.
Probab=99.96 E-value=1e-27 Score=184.17 Aligned_cols=209 Identities=21% Similarity=0.305 Sum_probs=136.3
Q ss_pred cEEEEEcCCCCCCCCcchHHHHHHHHHcCccEEEEccccCCCCCCCccccchHHHHHHHHHHHHHHHhcCCceEEEEEeC
Q 022960 46 QLVIVCHGFQSTKDRIPMVNLAAALEREGISAFRFDFSGNGESEGSFLYGNYRREAEDLRAIVQDFCAKGRVITAIIGHS 125 (289)
Q Consensus 46 ~~iv~~hG~~~~~~~~~~~~~~~~l~~~G~~v~~~d~~G~G~s~~~~~~~~~~~~~~d~~~~i~~l~~~~~~~~~l~G~S 125 (289)
|+||++||++++.. .|..+.+.|.+ +|+|+++|+||||.|.... ..++.+.++++.+. ..++++++|||
T Consensus 5 ~~iv~~HG~~~~~~--~~~~~~~~l~~-~~~vi~~d~~G~G~s~~~~-~~~~~~~~~~~~~~-------~~~~~~lvG~S 73 (245)
T TIGR01738 5 VHLVLIHGWGMNAE--VFRCLDEELSA-HFTLHLVDLPGHGRSRGFG-PLSLADAAEAIAAQ-------APDPAIWLGWS 73 (245)
T ss_pred ceEEEEcCCCCchh--hHHHHHHhhcc-CeEEEEecCCcCccCCCCC-CcCHHHHHHHHHHh-------CCCCeEEEEEc
Confidence 78999999999885 48999999976 5999999999999987543 23444444444332 23579999999
Q ss_pred hhHHHHHHHHHhCCC-ccEEEEeccCCccccc--cccccc----chhHhhhhhc------Cccc---cccccccccc---
Q 022960 126 KGGNAVLLYASKYND-ISIVINISGRFNLKRG--IEGRLG----LGYLQRIKQN------GFID---VRNKKGKLEY--- 186 (289)
Q Consensus 126 ~Gg~~a~~~a~~~p~-v~~~v~~~~~~~~~~~--~~~~~~----~~~~~~~~~~------~~~~---~~~~~~~~~~--- 186 (289)
|||.+++.++.++|+ ++++|++++....... ...... ..+...+... .+.. ..........
T Consensus 74 ~Gg~~a~~~a~~~p~~v~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (245)
T TIGR01738 74 LGGLVALHIAATHPDRVRALVTVASSPCFSAREDWPEGIKPDVLTGFQQQLSDDYQRTIERFLALQTLGTPTARQDARAL 153 (245)
T ss_pred HHHHHHHHHHHHCHHhhheeeEecCCcccccCCcccccCCHHHHHHHHHHhhhhHHHHHHHHHHHHHhcCCccchHHHHH
Confidence 999999999999999 9999999775432111 000000 0000000000 0000 0000000000
Q ss_pred ------ccC--hhhhhhhh----ccchhhhhcccccCceEEEEEeCCCCccChhhHHHHHhhCCCcEEEEEcCCCcccc-
Q 022960 187 ------RVT--QESLMDRL----STDIHAACHMICQDCRVLTIHGTKDKMVPAEDALEFDKFIPNHKLHIIEGADHEFT- 253 (289)
Q Consensus 187 ------~~~--~~~~~~~~----~~~~~~~~~~~~~~~P~l~i~g~~D~~~~~~~~~~~~~~~~~~~~~~~~~~gH~~~- 253 (289)
... ...+...+ ..+.... ..++++|+++++|++|.++|.+..+.+.+.++++++++++++||+++
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--l~~i~~Pvlii~g~~D~~~~~~~~~~~~~~~~~~~~~~~~~~gH~~~~ 231 (245)
T TIGR01738 154 KQTLLARPTPNVQVLQAGLEILATVDLRQP--LQNISVPFLRLYGYLDGLVPAKVVPYLDKLAPHSELYIFAKAAHAPFL 231 (245)
T ss_pred HHHhhccCCCCHHHHHHHHHHhhcccHHHH--HhcCCCCEEEEeecCCcccCHHHHHHHHHhCCCCeEEEeCCCCCCccc
Confidence 000 00000000 0111111 12568999999999999999999999999999999999999999955
Q ss_pred cCchHHHHHHHHHH
Q 022960 254 SHQDELASLVIQFI 267 (289)
Q Consensus 254 ~~~~~~~~~i~~fl 267 (289)
++++++++.|.+|+
T Consensus 232 e~p~~~~~~i~~fi 245 (245)
T TIGR01738 232 SHAEAFCALLVAFK 245 (245)
T ss_pred cCHHHHHHHHHhhC
Confidence 77889999999985
No 42
>PRK14875 acetoin dehydrogenase E2 subunit dihydrolipoyllysine-residue acetyltransferase; Provisional
Probab=99.95 E-value=2.2e-27 Score=193.32 Aligned_cols=230 Identities=20% Similarity=0.239 Sum_probs=149.4
Q ss_pred CCceEEEEEeecCCCcEEEEEcCCCCCCCCcchHHHHHHHHHcCccEEEEccccCCCCCCCccccchHHHHHHHHHHHHH
Q 022960 31 HGEKLVGILHETGSKQLVIVCHGFQSTKDRIPMVNLAAALEREGISAFRFDFSGNGESEGSFLYGNYRREAEDLRAIVQD 110 (289)
Q Consensus 31 ~g~~l~~~~~~~~~~~~iv~~hG~~~~~~~~~~~~~~~~l~~~G~~v~~~d~~G~G~s~~~~~~~~~~~~~~d~~~~i~~ 110 (289)
++.++++...+++++++|||+||++++... |..+.+.|.+. |+|+++|+||||.|.......++.+.++++.++++.
T Consensus 117 ~~~~i~~~~~g~~~~~~vl~~HG~~~~~~~--~~~~~~~l~~~-~~v~~~d~~g~G~s~~~~~~~~~~~~~~~~~~~~~~ 193 (371)
T PRK14875 117 GGRTVRYLRLGEGDGTPVVLIHGFGGDLNN--WLFNHAALAAG-RPVIALDLPGHGASSKAVGAGSLDELAAAVLAFLDA 193 (371)
T ss_pred cCcEEEEecccCCCCCeEEEECCCCCccch--HHHHHHHHhcC-CEEEEEcCCCCCCCCCCCCCCCHHHHHHHHHHHHHh
Confidence 355666554455568899999999999865 88889888875 999999999999997655566778888888888877
Q ss_pred HHhcCCceEEEEEeChhHHHHHHHHHhCCC-ccEEEEeccCCcccccc---cccc----cchhHhhhhhcCccccccccc
Q 022960 111 FCAKGRVITAIIGHSKGGNAVLLYASKYND-ISIVINISGRFNLKRGI---EGRL----GLGYLQRIKQNGFIDVRNKKG 182 (289)
Q Consensus 111 l~~~~~~~~~l~G~S~Gg~~a~~~a~~~p~-v~~~v~~~~~~~~~~~~---~~~~----~~~~~~~~~~~~~~~~~~~~~ 182 (289)
+ +..+++++|||+||.+++.+|..+|+ ++++|++++........ ...+ ............+........
T Consensus 194 ~---~~~~~~lvG~S~Gg~~a~~~a~~~~~~v~~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (371)
T PRK14875 194 L---GIERAHLVGHSMGGAVALRLAARAPQRVASLTLIAPAGLGPEINGDYIDGFVAAESRRELKPVLELLFADPALVTR 270 (371)
T ss_pred c---CCccEEEEeechHHHHHHHHHHhCchheeEEEEECcCCcCcccchhHHHHhhcccchhHHHHHHHHHhcChhhCCH
Confidence 6 77789999999999999999999997 99999998753221100 0000 000000000000000000000
Q ss_pred c---ccc-----ccChhh---hhhhh-cc---chhhhhcccccCceEEEEEeCCCCccChhhHHHHHhhCCCcEEEEEcC
Q 022960 183 K---LEY-----RVTQES---LMDRL-ST---DIHAACHMICQDCRVLTIHGTKDKMVPAEDALEFDKFIPNHKLHIIEG 247 (289)
Q Consensus 183 ~---~~~-----~~~~~~---~~~~~-~~---~~~~~~~~~~~~~P~l~i~g~~D~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (289)
. ..+ ...... +.... .. .........++++|+|+++|++|.++|++.++.+ ..+.++.++++
T Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~Pvlii~g~~D~~vp~~~~~~l---~~~~~~~~~~~ 347 (371)
T PRK14875 271 QMVEDLLKYKRLDGVDDALRALADALFAGGRQRVDLRDRLASLAIPVLVIWGEQDRIIPAAHAQGL---PDGVAVHVLPG 347 (371)
T ss_pred HHHHHHHHHhccccHHHHHHHHHHHhccCcccchhHHHHHhcCCCCEEEEEECCCCccCHHHHhhc---cCCCeEEEeCC
Confidence 0 000 000000 00000 00 0000011124689999999999999998876654 34689999999
Q ss_pred CCcccc-cCchHHHHHHHHHHHh
Q 022960 248 ADHEFT-SHQDELASLVIQFIKA 269 (289)
Q Consensus 248 ~gH~~~-~~~~~~~~~i~~fl~~ 269 (289)
+||+++ ++++++.+.|.+||++
T Consensus 348 ~gH~~~~e~p~~~~~~i~~fl~~ 370 (371)
T PRK14875 348 AGHMPQMEAAADVNRLLAEFLGK 370 (371)
T ss_pred CCCChhhhCHHHHHHHHHHHhcc
Confidence 999965 6678899999999864
No 43
>PRK10985 putative hydrolase; Provisional
Probab=99.95 E-value=7.3e-27 Score=185.71 Aligned_cols=250 Identities=16% Similarity=0.127 Sum_probs=157.3
Q ss_pred cceeeEEeeCCCCceEEEEEee-c---CCCcEEEEEcCCCCCCCCcchHHHHHHHHHcCccEEEEccccCCCCCCCcccc
Q 022960 20 VQRRRVVIPNSHGEKLVGILHE-T---GSKQLVIVCHGFQSTKDRIPMVNLAAALEREGISAFRFDFSGNGESEGSFLYG 95 (289)
Q Consensus 20 ~~~~~~~~~~~~g~~l~~~~~~-~---~~~~~iv~~hG~~~~~~~~~~~~~~~~l~~~G~~v~~~d~~G~G~s~~~~~~~ 95 (289)
+..+...+...||..+...+.. + +++|+||++||++++....++..+++.|.++||+|+++|+||||.+.......
T Consensus 29 ~~~~~~~~~~~dg~~~~l~w~~~~~~~~~~p~vll~HG~~g~~~~~~~~~~~~~l~~~G~~v~~~d~rG~g~~~~~~~~~ 108 (324)
T PRK10985 29 FTPYWQRLELPDGDFVDLAWSEDPAQARHKPRLVLFHGLEGSFNSPYAHGLLEAAQKRGWLGVVMHFRGCSGEPNRLHRI 108 (324)
T ss_pred CCcceeEEECCCCCEEEEecCCCCccCCCCCEEEEeCCCCCCCcCHHHHHHHHHHHHCCCEEEEEeCCCCCCCccCCcce
Confidence 3444555677788777655432 2 25789999999998765434567889999999999999999999775432211
Q ss_pred chHHHHHHHHHHHHHHHhc-CCceEEEEEeChhHHHHHHHHHhCC-C--ccEEEEeccCCccccccc---cc----ccch
Q 022960 96 NYRREAEDLRAIVQDFCAK-GRVITAIIGHSKGGNAVLLYASKYN-D--ISIVINISGRFNLKRGIE---GR----LGLG 164 (289)
Q Consensus 96 ~~~~~~~d~~~~i~~l~~~-~~~~~~l~G~S~Gg~~a~~~a~~~p-~--v~~~v~~~~~~~~~~~~~---~~----~~~~ 164 (289)
......+|+..+++++++. +..+++++||||||.+++.++..++ + ++++|+++++++...... .. ....
T Consensus 109 ~~~~~~~D~~~~i~~l~~~~~~~~~~~vG~S~GG~i~~~~~~~~~~~~~~~~~v~i~~p~~~~~~~~~~~~~~~~~~~~~ 188 (324)
T PRK10985 109 YHSGETEDARFFLRWLQREFGHVPTAAVGYSLGGNMLACLLAKEGDDLPLDAAVIVSAPLMLEACSYRMEQGFSRVYQRY 188 (324)
T ss_pred ECCCchHHHHHHHHHHHHhCCCCCEEEEEecchHHHHHHHHHhhCCCCCccEEEEEcCCCCHHHHHHHHhhhHHHHHHHH
Confidence 1123468888888888765 5668999999999999888887764 3 889999998876432110 00 1110
Q ss_pred hHhhhhhcC---cccccccc--c-cccc-ccChh--------------hhhhhh-ccchhhhhcccccCceEEEEEeCCC
Q 022960 165 YLQRIKQNG---FIDVRNKK--G-KLEY-RVTQE--------------SLMDRL-STDIHAACHMICQDCRVLTIHGTKD 222 (289)
Q Consensus 165 ~~~~~~~~~---~~~~~~~~--~-~~~~-~~~~~--------------~~~~~~-~~~~~~~~~~~~~~~P~l~i~g~~D 222 (289)
+...+.... ........ . .... ..... ...+.+ ..+.... ..++++|+++|+|++|
T Consensus 189 l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fd~~~~~~~~g~~~~~~~y~~~~~~~~--l~~i~~P~lii~g~~D 266 (324)
T PRK10985 189 LLNLLKANAARKLAAYPGTLPINLAQLKSVRRLREFDDLITARIHGFADAIDYYRQCSALPL--LNQIRKPTLIIHAKDD 266 (324)
T ss_pred HHHHHHHHHHHHHHhccccccCCHHHHhcCCcHHHHhhhheeccCCCCCHHHHHHHCChHHH--HhCCCCCEEEEecCCC
Confidence 111111000 00000000 0 0000 00000 000111 0111111 1256899999999999
Q ss_pred CccChhhHHHHHhhCCCcEEEEEcCCCcccccC-----c-hHHHHHHHHHHHhhc
Q 022960 223 KMVPAEDALEFDKFIPNHKLHIIEGADHEFTSH-----Q-DELASLVIQFIKANY 271 (289)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~gH~~~~~-----~-~~~~~~i~~fl~~~~ 271 (289)
++++.+....+.+..++.++.+++++||+.+.+ + ..+-+.+.+|++...
T Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~GH~~~~~g~~~~~~~w~~~~~~~~~~~~~ 321 (324)
T PRK10985 267 PFMTHEVIPKPESLPPNVEYQLTEHGGHVGFVGGTLLKPQMWLEQRIPDWLTTYL 321 (324)
T ss_pred CCCChhhChHHHHhCCCeEEEECCCCCceeeCCCCCCCCCccHHHHHHHHHHHhh
Confidence 999998888887788899999999999995532 1 356777889987654
No 44
>TIGR03695 menH_SHCHC 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase. This protein catalyzes the formation of SHCHC, or (1 R,6 R)-2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate, by elmination of pyruvate from 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate (SEPHCHC). Note that SHCHC synthase activity previously was attributed to MenD, which in fact is SEPHCHC synthase.
Probab=99.95 E-value=3.5e-27 Score=181.64 Aligned_cols=215 Identities=24% Similarity=0.340 Sum_probs=140.7
Q ss_pred CcEEEEEcCCCCCCCCcchHHHHHHHHHcCccEEEEccccCCCCCCCcc--ccchHHHHHH-HHHHHHHHHhcCCceEEE
Q 022960 45 KQLVIVCHGFQSTKDRIPMVNLAAALEREGISAFRFDFSGNGESEGSFL--YGNYRREAED-LRAIVQDFCAKGRVITAI 121 (289)
Q Consensus 45 ~~~iv~~hG~~~~~~~~~~~~~~~~l~~~G~~v~~~d~~G~G~s~~~~~--~~~~~~~~~d-~~~~i~~l~~~~~~~~~l 121 (289)
+|+||++||++++... |..+.+.|+ .||+|+++|+||||.|..+.. ..++.+.+++ +..+++.+ +.+++++
T Consensus 1 ~~~vv~~hG~~~~~~~--~~~~~~~L~-~~~~v~~~d~~g~G~s~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~l 74 (251)
T TIGR03695 1 KPVLVFLHGFLGSGAD--WQALIELLG-PHFRCLAIDLPGHGSSQSPDEIERYDFEEAAQDILATLLDQL---GIEPFFL 74 (251)
T ss_pred CCEEEEEcCCCCchhh--HHHHHHHhc-ccCeEEEEcCCCCCCCCCCCccChhhHHHHHHHHHHHHHHHc---CCCeEEE
Confidence 4789999999998864 899999998 689999999999999976532 3456666666 55555555 6778999
Q ss_pred EEeChhHHHHHHHHHhCCC-ccEEEEeccCCccccccccc----ccchhHhhhhhcCcccc---------ccc---cccc
Q 022960 122 IGHSKGGNAVLLYASKYND-ISIVINISGRFNLKRGIEGR----LGLGYLQRIKQNGFIDV---------RNK---KGKL 184 (289)
Q Consensus 122 ~G~S~Gg~~a~~~a~~~p~-v~~~v~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~---------~~~---~~~~ 184 (289)
+|||+||.+++.++.++|+ |++++++++........... ....+...+........ ... ....
T Consensus 75 ~G~S~Gg~ia~~~a~~~~~~v~~lil~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (251)
T TIGR03695 75 VGYSMGGRIALYYALQYPERVQGLILESGSPGLATEEERAARRQNDEQLAQRFEQEGLEAFLDDWYQQPLFASQKNLPPE 154 (251)
T ss_pred EEeccHHHHHHHHHHhCchheeeeEEecCCCCcCchHhhhhhhhcchhhhhHHHhcCccHHHHHHhcCceeeecccCChH
Confidence 9999999999999999999 99999998765432211000 00000111110000000 000 0000
Q ss_pred -c-------cccChhhhhhhhc-------cchhhhhcccccCceEEEEEeCCCCccChhhHHHHHhhCCCcEEEEEcCCC
Q 022960 185 -E-------YRVTQESLMDRLS-------TDIHAACHMICQDCRVLTIHGTKDKMVPAEDALEFDKFIPNHKLHIIEGAD 249 (289)
Q Consensus 185 -~-------~~~~~~~~~~~~~-------~~~~~~~~~~~~~~P~l~i~g~~D~~~~~~~~~~~~~~~~~~~~~~~~~~g 249 (289)
. .......+...+. .+.... ..++++|+++++|++|..++ +..+.+.+..++++++.++++|
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~P~l~i~g~~D~~~~-~~~~~~~~~~~~~~~~~~~~~g 231 (251)
T TIGR03695 155 QRQALRAKRLANNPEGLAKMLRATGLGKQPSLWPK--LQALTIPVLYLCGEKDEKFV-QIAKEMQKLLPNLTLVIIANAG 231 (251)
T ss_pred HhHHHHHhcccccchHHHHHHHHhhhhcccchHHH--hhCCCCceEEEeeCcchHHH-HHHHHHHhcCCCCcEEEEcCCC
Confidence 0 0000000000000 000011 12468999999999998774 5677788888999999999999
Q ss_pred cccc-cCchHHHHHHHHHHH
Q 022960 250 HEFT-SHQDELASLVIQFIK 268 (289)
Q Consensus 250 H~~~-~~~~~~~~~i~~fl~ 268 (289)
|+++ ++++++++.|.+||+
T Consensus 232 H~~~~e~~~~~~~~i~~~l~ 251 (251)
T TIGR03695 232 HNIHLENPEAFAKILLAFLE 251 (251)
T ss_pred CCcCccChHHHHHHHHHHhC
Confidence 9965 677889999999973
No 45
>TIGR01392 homoserO_Ac_trn homoserine O-acetyltransferase. This family describes homoserine-O-acetyltransferase, an enzyme of methionine biosynthesis. This model has been rebuilt to identify sequences more broadly, including a number of sequences suggested to be homoserine O-acetyltransferase based on proximity to other Met biosynthesis genes.
Probab=99.95 E-value=2.2e-27 Score=190.96 Aligned_cols=235 Identities=17% Similarity=0.225 Sum_probs=150.2
Q ss_pred CCceEEEEEeec---CCCcEEEEEcCCCCCCCCc---------chHHHH---HHHHHcCccEEEEcccc--CCCCCCC--
Q 022960 31 HGEKLVGILHET---GSKQLVIVCHGFQSTKDRI---------PMVNLA---AALEREGISAFRFDFSG--NGESEGS-- 91 (289)
Q Consensus 31 ~g~~l~~~~~~~---~~~~~iv~~hG~~~~~~~~---------~~~~~~---~~l~~~G~~v~~~d~~G--~G~s~~~-- 91 (289)
+|.+++|..+++ +.+++||++||++++.... +|..+. ..|...+|.|+++|+|| ||.|...
T Consensus 14 ~~~~~~y~~~g~~~~~~~~~vll~Hg~~~~~~~~~~~~~~~~~~w~~~~~~~~~l~~~~~~vi~~D~~G~~~g~s~~~~~ 93 (351)
T TIGR01392 14 SDVRVAYETYGTLNAERSNAVLVCHALTGDAHVAGYHDDGDPGWWDDLIGPGRAIDTDRYFVVCSNVLGGCYGSTGPSSI 93 (351)
T ss_pred CCceEEEEeccccCCCCCCEEEEcCCcCcchhhcccCCCCCCCchhhccCCCCCcCCCceEEEEecCCCCCCCCCCCCCC
Confidence 567788877764 3468999999999976321 366665 35555679999999999 5555421
Q ss_pred ----------ccccchHHHHHHHHHHHHHHHhcCCce-EEEEEeChhHHHHHHHHHhCCC-ccEEEEeccCCcccccccc
Q 022960 92 ----------FLYGNYRREAEDLRAIVQDFCAKGRVI-TAIIGHSKGGNAVLLYASKYND-ISIVINISGRFNLKRGIEG 159 (289)
Q Consensus 92 ----------~~~~~~~~~~~d~~~~i~~l~~~~~~~-~~l~G~S~Gg~~a~~~a~~~p~-v~~~v~~~~~~~~~~~~~~ 159 (289)
....++.++++|+.++++.+ +.++ ++++||||||.+++.++.++|+ |+++|++++..........
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l---~~~~~~~l~G~S~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~~ 170 (351)
T TIGR01392 94 NPGGRPYGSDFPLITIRDDVKAQKLLLDHL---GIEQIAAVVGGSMGGMQALEWAIDYPERVRAIVVLATSARHSAWCIA 170 (351)
T ss_pred CCCCCcCCCCCCCCcHHHHHHHHHHHHHHc---CCCCceEEEEECHHHHHHHHHHHHChHhhheEEEEccCCcCCHHHHH
Confidence 11346788889999999888 7888 9999999999999999999999 9999999986543211000
Q ss_pred c---ccchh-----------------------Hhhhhh----------cCcccccccc--cc---------ccc------
Q 022960 160 R---LGLGY-----------------------LQRIKQ----------NGFIDVRNKK--GK---------LEY------ 186 (289)
Q Consensus 160 ~---~~~~~-----------------------~~~~~~----------~~~~~~~~~~--~~---------~~~------ 186 (289)
. ..... ...+.. ..+....... .. ..+
T Consensus 171 ~~~~~~~~~~~~~~~~~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (351)
T TIGR01392 171 FNEVQRQAILADPNWNDGDYYEDGQPDRGLALARMLAHLTYRSEESMAERFGRAPQSGESPASGFDTRFQVESYLRYQGD 250 (351)
T ss_pred HHHHHHHHHHhCCCCCCCCCCCCCChhhHHHHHHHHHHHhcCCHHHHHHHhCcCcccccccccccCccchHHHHHHHHHH
Confidence 0 00000 000000 0000000000 00 000
Q ss_pred ----ccChhhh---hhhhc-cchh-----hhhcccccCceEEEEEeCCCCccChhhHHHHHhhCCCcEEE-----EEcCC
Q 022960 187 ----RVTQESL---MDRLS-TDIH-----AACHMICQDCRVLTIHGTKDKMVPAEDALEFDKFIPNHKLH-----IIEGA 248 (289)
Q Consensus 187 ----~~~~~~~---~~~~~-~~~~-----~~~~~~~~~~P~l~i~g~~D~~~~~~~~~~~~~~~~~~~~~-----~~~~~ 248 (289)
......+ ...+. .+.. ......+|++|+|+|+|++|.++|++.++.+++.++++++. +++++
T Consensus 251 ~~~~~~d~~~~~~~~~~l~~~d~~~~~~~~~~~l~~I~~P~Lvi~G~~D~~~p~~~~~~~a~~i~~~~~~v~~~~i~~~~ 330 (351)
T TIGR01392 251 KFVDRFDANSYLYLTRALDTHDLGRGRGSLTEALSRIKAPFLVVSITSDWLFPPAESRELAKALPAAGLRVTYVEIESPY 330 (351)
T ss_pred HHHhhcCcchHHHHHHHHHhcCCcCCCCCHHHHHhhCCCCEEEEEeCCccccCHHHHHHHHHHHhhcCCceEEEEeCCCC
Confidence 0000000 00000 0000 00112256899999999999999999999999999988765 55789
Q ss_pred Ccccc-cCchHHHHHHHHHHH
Q 022960 249 DHEFT-SHQDELASLVIQFIK 268 (289)
Q Consensus 249 gH~~~-~~~~~~~~~i~~fl~ 268 (289)
||..+ ++++++++.|.+||+
T Consensus 331 GH~~~le~p~~~~~~l~~FL~ 351 (351)
T TIGR01392 331 GHDAFLVETDQVEELIRGFLR 351 (351)
T ss_pred CcchhhcCHHHHHHHHHHHhC
Confidence 99965 778899999999973
No 46
>PLN02894 hydrolase, alpha/beta fold family protein
Probab=99.95 E-value=8.4e-26 Score=183.77 Aligned_cols=232 Identities=15% Similarity=0.117 Sum_probs=141.0
Q ss_pred eEEEEEee-cCCCcEEEEEcCCCCCCCCcchHHHHHHHHHcCccEEEEccccCCCCCCCccc-cchHH----HHHHHHHH
Q 022960 34 KLVGILHE-TGSKQLVIVCHGFQSTKDRIPMVNLAAALEREGISAFRFDFSGNGESEGSFLY-GNYRR----EAEDLRAI 107 (289)
Q Consensus 34 ~l~~~~~~-~~~~~~iv~~hG~~~~~~~~~~~~~~~~l~~~G~~v~~~d~~G~G~s~~~~~~-~~~~~----~~~d~~~~ 107 (289)
.+.+..+. .+++|+||++||++++.. .|....+.|.+. |+|+++|+||||.|+.+... .+... .++++.++
T Consensus 93 ~~~~~~~~~~~~~p~vvllHG~~~~~~--~~~~~~~~L~~~-~~vi~~D~rG~G~S~~~~~~~~~~~~~~~~~~~~i~~~ 169 (402)
T PLN02894 93 FINTVTFDSKEDAPTLVMVHGYGASQG--FFFRNFDALASR-FRVIAIDQLGWGGSSRPDFTCKSTEETEAWFIDSFEEW 169 (402)
T ss_pred eEEEEEecCCCCCCEEEEECCCCcchh--HHHHHHHHHHhC-CEEEEECCCCCCCCCCCCcccccHHHHHHHHHHHHHHH
Confidence 45444433 346799999999998774 377778888875 99999999999999765322 11121 23344444
Q ss_pred HHHHHhcCCceEEEEEeChhHHHHHHHHHhCCC-ccEEEEeccCCccccccc--ccc---cchhH---------------
Q 022960 108 VQDFCAKGRVITAIIGHSKGGNAVLLYASKYND-ISIVINISGRFNLKRGIE--GRL---GLGYL--------------- 166 (289)
Q Consensus 108 i~~l~~~~~~~~~l~G~S~Gg~~a~~~a~~~p~-v~~~v~~~~~~~~~~~~~--~~~---~~~~~--------------- 166 (289)
++.+ +.++++|+||||||.+++.+|.++|+ |+++|++++......... ... ...+.
T Consensus 170 ~~~l---~~~~~~lvGhS~GG~la~~~a~~~p~~v~~lvl~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 246 (402)
T PLN02894 170 RKAK---NLSNFILLGHSFGGYVAAKYALKHPEHVQHLILVGPAGFSSESDDKSEWLTKFRATWKGAVLNHLWESNFTPQ 246 (402)
T ss_pred HHHc---CCCCeEEEEECHHHHHHHHHHHhCchhhcEEEEECCccccCCcchhHHHHhhcchhHHHHHHHHHhhcCCCHH
Confidence 4433 77799999999999999999999998 999999987532211100 000 00000
Q ss_pred --------------hhhhhcCccccccc--cccccccc-------------Chhhhhhhh-------ccchhhhhccccc
Q 022960 167 --------------QRIKQNGFIDVRNK--KGKLEYRV-------------TQESLMDRL-------STDIHAACHMICQ 210 (289)
Q Consensus 167 --------------~~~~~~~~~~~~~~--~~~~~~~~-------------~~~~~~~~~-------~~~~~~~~~~~~~ 210 (289)
.......+...... ........ ......... ..+.... ..++
T Consensus 247 ~~~~~~gp~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--l~~I 324 (402)
T PLN02894 247 KIIRGLGPWGPNLVRRYTTARFGAHSTGDILSEEESKLLTDYVYHTLAAKASGELCLKYIFSFGAFARKPLLES--ASEW 324 (402)
T ss_pred HHHHhccchhHHHHHHHHHHHhhhcccccccCcchhhHHHHHHHHhhcCCCchHHHHHHhccCchhhcchHhhh--cccC
Confidence 00000000000000 00000000 000000000 0111111 1246
Q ss_pred CceEEEEEeCCCCccChhhHHHHHhhCC-CcEEEEEcCCCcccc-cCchHHHHHHHHHHHhhcCCC
Q 022960 211 DCRVLTIHGTKDKMVPAEDALEFDKFIP-NHKLHIIEGADHEFT-SHQDELASLVIQFIKANYQKD 274 (289)
Q Consensus 211 ~~P~l~i~g~~D~~~~~~~~~~~~~~~~-~~~~~~~~~~gH~~~-~~~~~~~~~i~~fl~~~~~~~ 274 (289)
++|+++++|++|.+.+ .....+.+..+ .+++++++++||+.+ ++++++++.+.+|++..+...
T Consensus 325 ~vP~liI~G~~D~i~~-~~~~~~~~~~~~~~~~~~i~~aGH~~~~E~P~~f~~~l~~~~~~~~~~~ 389 (402)
T PLN02894 325 KVPTTFIYGRHDWMNY-EGAVEARKRMKVPCEIIRVPQGGHFVFLDNPSGFHSAVLYACRKYLSPD 389 (402)
T ss_pred CCCEEEEEeCCCCCCc-HHHHHHHHHcCCCCcEEEeCCCCCeeeccCHHHHHHHHHHHHHHhccCC
Confidence 8999999999998765 55555555554 589999999999965 778899999999999988764
No 47
>TIGR03100 hydr1_PEP hydrolase, ortholog 1, exosortase system type 1 associated. This group of proteins are members of the alpha/beta hydrolase superfamily. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system, specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present in the vicinity of a second, relatively unrelated enzyme (ortholog 2, TIGR03101) of the same superfamily.
Probab=99.95 E-value=5.5e-26 Score=176.32 Aligned_cols=239 Identities=23% Similarity=0.310 Sum_probs=151.6
Q ss_pred eeEEeeCCCCceEEEEEeecC--CCcEEEEEcCCCCCCC--CcchHHHHHHHHHcCccEEEEccccCCCCCCCccccchH
Q 022960 23 RRVVIPNSHGEKLVGILHETG--SKQLVIVCHGFQSTKD--RIPMVNLAAALEREGISAFRFDFSGNGESEGSFLYGNYR 98 (289)
Q Consensus 23 ~~~~~~~~~g~~l~~~~~~~~--~~~~iv~~hG~~~~~~--~~~~~~~~~~l~~~G~~v~~~d~~G~G~s~~~~~~~~~~ 98 (289)
+.+.+.. +|.++.+++..|. +++.+|++||+++... ...+..+++.|+++||.|+++|+||||.|.+.. .++.
T Consensus 3 ~~~~~~~-~~~~l~g~~~~p~~~~~~~vv~i~gg~~~~~g~~~~~~~la~~l~~~G~~v~~~Dl~G~G~S~~~~--~~~~ 79 (274)
T TIGR03100 3 RALTFSC-EGETLVGVLHIPGASHTTGVLIVVGGPQYRVGSHRQFVLLARRLAEAGFPVLRFDYRGMGDSEGEN--LGFE 79 (274)
T ss_pred eeEEEEc-CCcEEEEEEEcCCCCCCCeEEEEeCCccccCCchhHHHHHHHHHHHCCCEEEEeCCCCCCCCCCCC--CCHH
Confidence 3566664 5677888777654 4567888888664321 123667899999999999999999999987543 3567
Q ss_pred HHHHHHHHHHHHHHhc--CCceEEEEEeChhHHHHHHHHHhCCCccEEEEeccCCcccccccc-cccchhHhhhhhcCcc
Q 022960 99 REAEDLRAIVQDFCAK--GRVITAIIGHSKGGNAVLLYASKYNDISIVINISGRFNLKRGIEG-RLGLGYLQRIKQNGFI 175 (289)
Q Consensus 99 ~~~~d~~~~i~~l~~~--~~~~~~l~G~S~Gg~~a~~~a~~~p~v~~~v~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 175 (289)
.+.+|+.++++++++. +.++++++|||+||.+++.++...+.|+++|+++|++........ .....+........+.
T Consensus 80 ~~~~d~~~~~~~l~~~~~g~~~i~l~G~S~Gg~~a~~~a~~~~~v~~lil~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (274)
T TIGR03100 80 GIDADIAAAIDAFREAAPHLRRIVAWGLCDAASAALLYAPADLRVAGLVLLNPWVRTEAAQAASRIRHYYLGQLLSADFW 159 (274)
T ss_pred HHHHHHHHHHHHHHhhCCCCCcEEEEEECHHHHHHHHHhhhCCCccEEEEECCccCCcccchHHHHHHHHHHHHhChHHH
Confidence 7889999999999765 567899999999999999987765559999999987543221111 1111111111111010
Q ss_pred cccccccccccccChhhhhh---------------hhccchhhhhcccccCceEEEEEeCCCCccChhhH------HHHH
Q 022960 176 DVRNKKGKLEYRVTQESLMD---------------RLSTDIHAACHMICQDCRVLTIHGTKDKMVPAEDA------LEFD 234 (289)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~P~l~i~g~~D~~~~~~~~------~~~~ 234 (289)
... ..+...+......+.. ....+...... .+++|+++++|..|...+ ... ..+.
T Consensus 160 ~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~~~~P~ll~~g~~D~~~~-~~~~~~~~~~~~~ 235 (274)
T TIGR03100 160 RKL-LSGEVNLGSSLRGLGDALLKARQKGDEVAHGGLAERMKAGLE--RFQGPVLFILSGNDLTAQ-EFADSVLGEPAWR 235 (274)
T ss_pred HHh-cCCCccHHHHHHHHHHHHHhhhhcCCCcccchHHHHHHHHHH--hcCCcEEEEEcCcchhHH-HHHHHhccChhhH
Confidence 000 0000000000000000 01111111122 348999999999998763 222 4455
Q ss_pred hhC--CCcEEEEEcCCCcccc-cCc-hHHHHHHHHHHH
Q 022960 235 KFI--PNHKLHIIEGADHEFT-SHQ-DELASLVIQFIK 268 (289)
Q Consensus 235 ~~~--~~~~~~~~~~~gH~~~-~~~-~~~~~~i~~fl~ 268 (289)
+.+ +++++..+++++|++. ++. +++.+.|.+||+
T Consensus 236 ~~l~~~~v~~~~~~~~~H~l~~e~~~~~v~~~i~~wL~ 273 (274)
T TIGR03100 236 GALEDPGIERVEIDGADHTFSDRVWREWVAARTTEWLR 273 (274)
T ss_pred HHhhcCCeEEEecCCCCcccccHHHHHHHHHHHHHHHh
Confidence 544 7899999999999874 333 689999999995
No 48
>PRK00175 metX homoserine O-acetyltransferase; Provisional
Probab=99.95 E-value=2.9e-26 Score=185.82 Aligned_cols=237 Identities=17% Similarity=0.187 Sum_probs=151.1
Q ss_pred CCceEEEEEeec---CCCcEEEEEcCCCCCCCCc-----------chHHHHH---HHHHcCccEEEEccccC-CCCCCCc
Q 022960 31 HGEKLVGILHET---GSKQLVIVCHGFQSTKDRI-----------PMVNLAA---ALEREGISAFRFDFSGN-GESEGSF 92 (289)
Q Consensus 31 ~g~~l~~~~~~~---~~~~~iv~~hG~~~~~~~~-----------~~~~~~~---~l~~~G~~v~~~d~~G~-G~s~~~~ 92 (289)
+|.+++|..++. +.+|+||++||++++...+ +|..++. .|...+|+|+++|++|+ |.|+++.
T Consensus 31 ~~~~~~y~~~G~~~~~~~p~vvl~HG~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~l~~~~~~vi~~Dl~G~~~~s~~~~ 110 (379)
T PRK00175 31 PPVELAYETYGTLNADRSNAVLICHALTGDHHVAGPHSPDDPKPGWWDNMVGPGKPIDTDRYFVICSNVLGGCKGSTGPS 110 (379)
T ss_pred CCceEEEEeccccCCCCCCEEEEeCCcCCchhhcccccccCCCCcchhhccCCCCccCccceEEEeccCCCCCCCCCCCC
Confidence 455667666653 2378999999999988631 2666652 34344799999999983 4443221
Q ss_pred --------------cccchHHHHHHHHHHHHHHHhcCCce-EEEEEeChhHHHHHHHHHhCCC-ccEEEEeccCCccccc
Q 022960 93 --------------LYGNYRREAEDLRAIVQDFCAKGRVI-TAIIGHSKGGNAVLLYASKYND-ISIVINISGRFNLKRG 156 (289)
Q Consensus 93 --------------~~~~~~~~~~d~~~~i~~l~~~~~~~-~~l~G~S~Gg~~a~~~a~~~p~-v~~~v~~~~~~~~~~~ 156 (289)
..+++..+++++.++++.+ +.++ ++++||||||.+++.+|.++|+ |+++|++++.......
T Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l---~~~~~~~lvG~S~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~~~~ 187 (379)
T PRK00175 111 SINPDTGKPYGSDFPVITIRDWVRAQARLLDAL---GITRLAAVVGGSMGGMQALEWAIDYPDRVRSALVIASSARLSAQ 187 (379)
T ss_pred CCCCCCCCcccCCCCcCCHHHHHHHHHHHHHHh---CCCCceEEEEECHHHHHHHHHHHhChHhhhEEEEECCCcccCHH
Confidence 1457888999999999988 7888 4899999999999999999999 9999999876533211
Q ss_pred ---ccccccchh------------------------Hhhh---h---h----cCcccccccccc-c--cc----------
Q 022960 157 ---IEGRLGLGY------------------------LQRI---K---Q----NGFIDVRNKKGK-L--EY---------- 186 (289)
Q Consensus 157 ---~~~~~~~~~------------------------~~~~---~---~----~~~~~~~~~~~~-~--~~---------- 186 (289)
+........ .... . . ..+......... . ..
T Consensus 188 ~~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~r~~~~~~~~s~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~l~~ 267 (379)
T PRK00175 188 NIAFNEVARQAILADPDWHGGDYYEHGVVPERGLAVARMIGHITYLSDDELDEKFGRELQSGELPFGFDVEFQVESYLRY 267 (379)
T ss_pred HHHHHHHHHHHHHhCCCCCCCCcccCCCChhHHHHHHHHHHHHHhcCHHHHHhhcCccccccccccCCCccchHHHHHHH
Confidence 000000000 0000 0 0 000000000000 0 00
Q ss_pred -------ccChhhhh---hhhc-c--------chhhhhcccccCceEEEEEeCCCCccChhhHHHHHhhCCCc----EEE
Q 022960 187 -------RVTQESLM---DRLS-T--------DIHAACHMICQDCRVLTIHGTKDKMVPAEDALEFDKFIPNH----KLH 243 (289)
Q Consensus 187 -------~~~~~~~~---~~~~-~--------~~~~~~~~~~~~~P~l~i~g~~D~~~~~~~~~~~~~~~~~~----~~~ 243 (289)
......+. ..+. . +... ...+|++|+|+|+|++|.++|++.++.+.+.++++ +++
T Consensus 268 ~~~~~~~~~d~~~~~~~~~~~~~~d~~~~~~~d~~~--~l~~I~~PtLvI~G~~D~~~p~~~~~~la~~i~~a~~~~~l~ 345 (379)
T PRK00175 268 QGDKFVERFDANSYLYLTRALDYFDPARGRGGDLAA--ALARIKARFLVVSFTSDWLFPPARSREIVDALLAAGADVSYA 345 (379)
T ss_pred HHHHHhhccCchHHHHHHHHHHhccccCCCCCCHHH--HHhcCCCCEEEEEECCccccCHHHHHHHHHHHHhcCCCeEEE
Confidence 00000000 0000 0 0111 11256899999999999999999999999999886 788
Q ss_pred EEc-CCCcccc-cCchHHHHHHHHHHHhhcC
Q 022960 244 IIE-GADHEFT-SHQDELASLVIQFIKANYQ 272 (289)
Q Consensus 244 ~~~-~~gH~~~-~~~~~~~~~i~~fl~~~~~ 272 (289)
+++ ++||..+ ++++++++.|.+||.+...
T Consensus 346 ~i~~~~GH~~~le~p~~~~~~L~~FL~~~~~ 376 (379)
T PRK00175 346 EIDSPYGHDAFLLDDPRYGRLVRAFLERAAR 376 (379)
T ss_pred EeCCCCCchhHhcCHHHHHHHHHHHHHhhhh
Confidence 775 8999955 7788999999999987543
No 49
>KOG4391 consensus Predicted alpha/beta hydrolase BEM46 [General function prediction only]
Probab=99.94 E-value=2.2e-26 Score=161.57 Aligned_cols=233 Identities=17% Similarity=0.168 Sum_probs=170.9
Q ss_pred ccCCcccceeeEEeeCCCCceEEEEEeec-CCCcEEEEEcCCCCCCCCcchHHHHHHH-HHcCccEEEEccccCCCCCCC
Q 022960 14 FQQDPVVQRRRVVIPNSHGEKLVGILHET-GSKQLVIVCHGFQSTKDRIPMVNLAAAL-EREGISAFRFDFSGNGESEGS 91 (289)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~g~~l~~~~~~~-~~~~~iv~~hG~~~~~~~~~~~~~~~~l-~~~G~~v~~~d~~G~G~s~~~ 91 (289)
.|.+..++.+.+++.+.|..++..+.... .+.|+++++||..|+-.. ....++.+ .+-+.+|+.+++||+|.|.+.
T Consensus 46 tP~~~n~pye~i~l~T~D~vtL~a~~~~~E~S~pTlLyfh~NAGNmGh--r~~i~~~fy~~l~mnv~ivsYRGYG~S~Gs 123 (300)
T KOG4391|consen 46 TPKEFNMPYERIELRTRDKVTLDAYLMLSESSRPTLLYFHANAGNMGH--RLPIARVFYVNLKMNVLIVSYRGYGKSEGS 123 (300)
T ss_pred CccccCCCceEEEEEcCcceeEeeeeecccCCCceEEEEccCCCcccc--hhhHHHHHHHHcCceEEEEEeeccccCCCC
Confidence 46677899999999999999999876543 489999999999988754 34445444 444899999999999999988
Q ss_pred ccccchHHHHHHHHHHHHHHHhc---CCceEEEEEeChhHHHHHHHHHhCCC-ccEEEEeccCCcccccccccccchhHh
Q 022960 92 FLYGNYRREAEDLRAIVQDFCAK---GRVITAIIGHSKGGNAVLLYASKYND-ISIVINISGRFNLKRGIEGRLGLGYLQ 167 (289)
Q Consensus 92 ~~~~~~~~~~~d~~~~i~~l~~~---~~~~~~l~G~S~Gg~~a~~~a~~~p~-v~~~v~~~~~~~~~~~~~~~~~~~~~~ 167 (289)
+.... ..-|..++++++..+ +..+++++|.|+||.+|+.+|+++.+ +.++|+-+.+...+......+.....+
T Consensus 124 psE~G---L~lDs~avldyl~t~~~~dktkivlfGrSlGGAvai~lask~~~ri~~~ivENTF~SIp~~~i~~v~p~~~k 200 (300)
T KOG4391|consen 124 PSEEG---LKLDSEAVLDYLMTRPDLDKTKIVLFGRSLGGAVAIHLASKNSDRISAIIVENTFLSIPHMAIPLVFPFPMK 200 (300)
T ss_pred ccccc---eeccHHHHHHHHhcCccCCcceEEEEecccCCeeEEEeeccchhheeeeeeechhccchhhhhheeccchhh
Confidence 76544 356778889999776 55689999999999999999999988 999998887665432221111110000
Q ss_pred hhhhcCcccccccccccccccChhhhhhhhccchhhhhcccccCceEEEEEeCCCCccChhhHHHHHhhCCC--cEEEEE
Q 022960 168 RIKQNGFIDVRNKKGKLEYRVTQESLMDRLSTDIHAACHMICQDCRVLTIHGTKDKMVPAEDALEFDKFIPN--HKLHII 245 (289)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~i~g~~D~~~~~~~~~~~~~~~~~--~~~~~~ 245 (289)
.+...-+ .+.+. ... ... ..+.|.|++.|.+|++||+...+.+++.++. .++..+
T Consensus 201 ~i~~lc~-------------------kn~~~-S~~-ki~--~~~~P~LFiSGlkDelVPP~~Mr~Ly~~c~S~~Krl~eF 257 (300)
T KOG4391|consen 201 YIPLLCY-------------------KNKWL-SYR-KIG--QCRMPFLFISGLKDELVPPVMMRQLYELCPSRTKRLAEF 257 (300)
T ss_pred HHHHHHH-------------------Hhhhc-chh-hhc--cccCceEEeecCccccCCcHHHHHHHHhCchhhhhheeC
Confidence 0000000 00000 000 000 2378999999999999999999999999975 789999
Q ss_pred cCCCcccccCchHHHHHHHHHHHhhcCCC
Q 022960 246 EGADHEFTSHQDELASLVIQFIKANYQKD 274 (289)
Q Consensus 246 ~~~gH~~~~~~~~~~~~i~~fl~~~~~~~ 274 (289)
|++.|.-.--.+-+.+.|.+||.+....+
T Consensus 258 P~gtHNDT~i~dGYfq~i~dFlaE~~~~~ 286 (300)
T KOG4391|consen 258 PDGTHNDTWICDGYFQAIEDFLAEVVKSS 286 (300)
T ss_pred CCCccCceEEeccHHHHHHHHHHHhccCC
Confidence 99999854445778999999999887653
No 50
>KOG1552 consensus Predicted alpha/beta hydrolase [General function prediction only]
Probab=99.94 E-value=1.9e-25 Score=162.49 Aligned_cols=216 Identities=19% Similarity=0.190 Sum_probs=162.9
Q ss_pred ceeeEEeeCCCCceEEEEEeecC--CCcEEEEEcCCCCCCCCcchHHHHHHHHHc-CccEEEEccccCCCCCCCccccch
Q 022960 21 QRRRVVIPNSHGEKLVGILHETG--SKQLVIVCHGFQSTKDRIPMVNLAAALERE-GISAFRFDFSGNGESEGSFLYGNY 97 (289)
Q Consensus 21 ~~~~~~~~~~~g~~l~~~~~~~~--~~~~iv~~hG~~~~~~~~~~~~~~~~l~~~-G~~v~~~d~~G~G~s~~~~~~~~~ 97 (289)
..+-+..++..|..+.+.++.+. ..++++++||...+... ...+...|..+ +++++.+|++|+|.|.+.+...
T Consensus 34 ~v~v~~~~t~rgn~~~~~y~~~~~~~~~~lly~hGNa~Dlgq--~~~~~~~l~~~ln~nv~~~DYSGyG~S~G~psE~-- 109 (258)
T KOG1552|consen 34 FVEVFKVKTSRGNEIVCMYVRPPEAAHPTLLYSHGNAADLGQ--MVELFKELSIFLNCNVVSYDYSGYGRSSGKPSER-- 109 (258)
T ss_pred ccceEEeecCCCCEEEEEEEcCccccceEEEEcCCcccchHH--HHHHHHHHhhcccceEEEEecccccccCCCcccc--
Confidence 34455666777878877776655 35899999999666542 44455555553 6999999999999999887654
Q ss_pred HHHHHHHHHHHHHHHhcC--CceEEEEEeChhHHHHHHHHHhCCCccEEEEeccCCcccccccccccchhHhhhhhcCcc
Q 022960 98 RREAEDLRAIVQDFCAKG--RVITAIIGHSKGGNAVLLYASKYNDISIVINISGRFNLKRGIEGRLGLGYLQRIKQNGFI 175 (289)
Q Consensus 98 ~~~~~d~~~~i~~l~~~~--~~~~~l~G~S~Gg~~a~~~a~~~p~v~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (289)
...+|+.++.++|++.. .++++|+|+|+|+..++.+|.+.| ++++|+.+|.....+.+.......
T Consensus 110 -n~y~Di~avye~Lr~~~g~~~~Iil~G~SiGt~~tv~Lasr~~-~~alVL~SPf~S~~rv~~~~~~~~----------- 176 (258)
T KOG1552|consen 110 -NLYADIKAVYEWLRNRYGSPERIILYGQSIGTVPTVDLASRYP-LAAVVLHSPFTSGMRVAFPDTKTT----------- 176 (258)
T ss_pred -cchhhHHHHHHHHHhhcCCCceEEEEEecCCchhhhhHhhcCC-cceEEEeccchhhhhhhccCcceE-----------
Confidence 44789999999998884 589999999999999999999999 999999999765433222110000
Q ss_pred cccccccccccccChhhhhhhhccchhhhhcccccCceEEEEEeCCCCccChhhHHHHHhhCCCc-EEEEEcCCCccccc
Q 022960 176 DVRNKKGKLEYRVTQESLMDRLSTDIHAACHMICQDCRVLTIHGTKDKMVPAEDALEFDKFIPNH-KLHIIEGADHEFTS 254 (289)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~i~g~~D~~~~~~~~~~~~~~~~~~-~~~~~~~~gH~~~~ 254 (289)
+.++.... .. .-..++||+|++||++|++++......+.+..+++ +-.++.|+||...+
T Consensus 177 ----------~~~d~f~~--------i~--kI~~i~~PVLiiHgtdDevv~~sHg~~Lye~~k~~~epl~v~g~gH~~~~ 236 (258)
T KOG1552|consen 177 ----------YCFDAFPN--------IE--KISKITCPVLIIHGTDDEVVDFSHGKALYERCKEKVEPLWVKGAGHNDIE 236 (258)
T ss_pred ----------Eeeccccc--------cC--cceeccCCEEEEecccCceecccccHHHHHhccccCCCcEEecCCCcccc
Confidence 00000000 01 11145899999999999999999999999999875 88999999999888
Q ss_pred CchHHHHHHHHHHHhhcCC
Q 022960 255 HQDELASLVIQFIKANYQK 273 (289)
Q Consensus 255 ~~~~~~~~i~~fl~~~~~~ 273 (289)
..+++.+.+..|+......
T Consensus 237 ~~~~yi~~l~~f~~~~~~~ 255 (258)
T KOG1552|consen 237 LYPEYIEHLRRFISSVLPS 255 (258)
T ss_pred cCHHHHHHHHHHHHHhccc
Confidence 8899999999999876543
No 51
>PRK10566 esterase; Provisional
Probab=99.94 E-value=7.7e-25 Score=168.55 Aligned_cols=207 Identities=17% Similarity=0.171 Sum_probs=132.7
Q ss_pred CCcEEEEEcCCCCCCCCcchHHHHHHHHHcCccEEEEccccCCCCCCCccccc-------hHHHHHHHHHHHHHHHhc--
Q 022960 44 SKQLVIVCHGFQSTKDRIPMVNLAAALEREGISAFRFDFSGNGESEGSFLYGN-------YRREAEDLRAIVQDFCAK-- 114 (289)
Q Consensus 44 ~~~~iv~~hG~~~~~~~~~~~~~~~~l~~~G~~v~~~d~~G~G~s~~~~~~~~-------~~~~~~d~~~~i~~l~~~-- 114 (289)
+.|+||++||++++... |..+++.|+++||.|+++|+||||.+........ .....+|+.++++++.+.
T Consensus 26 ~~p~vv~~HG~~~~~~~--~~~~~~~l~~~G~~v~~~d~~g~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 103 (249)
T PRK10566 26 PLPTVFFYHGFTSSKLV--YSYFAVALAQAGFRVIMPDAPMHGARFSGDEARRLNHFWQILLQNMQEFPTLRAAIREEGW 103 (249)
T ss_pred CCCEEEEeCCCCcccch--HHHHHHHHHhCCCEEEEecCCcccccCCCccccchhhHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 46899999999988754 8889999999999999999999997632211111 123357777888887665
Q ss_pred -CCceEEEEEeChhHHHHHHHHHhCCCccEEEEeccCCcccccccccccchhHhhhhhcCcccccccccccccccChhhh
Q 022960 115 -GRVITAIIGHSKGGNAVLLYASKYNDISIVINISGRFNLKRGIEGRLGLGYLQRIKQNGFIDVRNKKGKLEYRVTQESL 193 (289)
Q Consensus 115 -~~~~~~l~G~S~Gg~~a~~~a~~~p~v~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (289)
+.++++++|||+||.+++.++.++|++++.+.+.+..... .. .... +......... ........+
T Consensus 104 ~~~~~i~v~G~S~Gg~~al~~~~~~~~~~~~~~~~~~~~~~-~~--------~~~~----~~~~~~~~~~-~~~~~~~~~ 169 (249)
T PRK10566 104 LLDDRLAVGGASMGGMTALGIMARHPWVKCVASLMGSGYFT-SL--------ARTL----FPPLIPETAA-QQAEFNNIV 169 (249)
T ss_pred cCccceeEEeecccHHHHHHHHHhCCCeeEEEEeeCcHHHH-HH--------HHHh----cccccccccc-cHHHHHHHH
Confidence 4568999999999999999999998865554433211110 00 0000 0000000000 000000000
Q ss_pred hhhhccchhhhhccccc-CceEEEEEeCCCCccChhhHHHHHhhCCC------cEEEEEcCCCcccccCchHHHHHHHHH
Q 022960 194 MDRLSTDIHAACHMICQ-DCRVLTIHGTKDKMVPAEDALEFDKFIPN------HKLHIIEGADHEFTSHQDELASLVIQF 266 (289)
Q Consensus 194 ~~~~~~~~~~~~~~~~~-~~P~l~i~g~~D~~~~~~~~~~~~~~~~~------~~~~~~~~~gH~~~~~~~~~~~~i~~f 266 (289)
......+..... .++ ++|+|+++|++|.++|++.++.+.+.++. ++++.+++++|.+. .+..+.+.+|
T Consensus 170 ~~~~~~~~~~~~--~~i~~~P~Lii~G~~D~~v~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~H~~~---~~~~~~~~~f 244 (249)
T PRK10566 170 APLAEWEVTHQL--EQLADRPLLLWHGLADDVVPAAESLRLQQALRERGLDKNLTCLWEPGVRHRIT---PEALDAGVAF 244 (249)
T ss_pred HHHhhcChhhhh--hhcCCCCEEEEEcCCCCcCCHHHHHHHHHHHHhcCCCcceEEEecCCCCCccC---HHHHHHHHHH
Confidence 000001111111 122 68999999999999999999998887642 57788999999863 5678999999
Q ss_pred HHhhc
Q 022960 267 IKANY 271 (289)
Q Consensus 267 l~~~~ 271 (289)
|++++
T Consensus 245 l~~~~ 249 (249)
T PRK10566 245 FRQHL 249 (249)
T ss_pred HHhhC
Confidence 98753
No 52
>PRK05855 short chain dehydrogenase; Validated
Probab=99.93 E-value=8.3e-25 Score=188.52 Aligned_cols=236 Identities=17% Similarity=0.163 Sum_probs=150.4
Q ss_pred eCCCCceEEEEEeecCCCcEEEEEcCCCCCCCCcchHHHHHHHHHcCccEEEEccccCCCCCCCc--cccchHHHHHHHH
Q 022960 28 PNSHGEKLVGILHETGSKQLVIVCHGFQSTKDRIPMVNLAAALEREGISAFRFDFSGNGESEGSF--LYGNYRREAEDLR 105 (289)
Q Consensus 28 ~~~~g~~l~~~~~~~~~~~~iv~~hG~~~~~~~~~~~~~~~~l~~~G~~v~~~d~~G~G~s~~~~--~~~~~~~~~~d~~ 105 (289)
...+|.+++++.++++++|+|||+||++++.. .|..+.+.|. .||+|+++|+||||.|.... ...+++.+++|+.
T Consensus 8 ~~~~g~~l~~~~~g~~~~~~ivllHG~~~~~~--~w~~~~~~L~-~~~~Vi~~D~~G~G~S~~~~~~~~~~~~~~a~dl~ 84 (582)
T PRK05855 8 VSSDGVRLAVYEWGDPDRPTVVLVHGYPDNHE--VWDGVAPLLA-DRFRVVAYDVRGAGRSSAPKRTAAYTLARLADDFA 84 (582)
T ss_pred EeeCCEEEEEEEcCCCCCCeEEEEcCCCchHH--HHHHHHHHhh-cceEEEEecCCCCCCCCCCCcccccCHHHHHHHHH
Confidence 34678899988777667899999999998885 4899999994 57999999999999998643 3457889999999
Q ss_pred HHHHHHHhcCCc-eEEEEEeChhHHHHHHHHHhC--CC-ccEEEEeccCCccc-ccc-cccc----cc---hhHhhhhhc
Q 022960 106 AIVQDFCAKGRV-ITAIIGHSKGGNAVLLYASKY--ND-ISIVINISGRFNLK-RGI-EGRL----GL---GYLQRIKQN 172 (289)
Q Consensus 106 ~~i~~l~~~~~~-~~~l~G~S~Gg~~a~~~a~~~--p~-v~~~v~~~~~~~~~-~~~-~~~~----~~---~~~~~~~~~ 172 (289)
++++.+ +.. +++|+||||||.+++.++... +. +..++.++++.... ... .... .. .....+...
T Consensus 85 ~~i~~l---~~~~~~~lvGhS~Gg~~a~~~a~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (582)
T PRK05855 85 AVIDAV---SPDRPVHLLAHDWGSIQGWEAVTRPRAAGRIASFTSVSGPSLDHVGFWLRSGLRRPTPRRLARALGQLLRS 161 (582)
T ss_pred HHHHHh---CCCCcEEEEecChHHHHHHHHHhCccchhhhhhheeccCCchHHHHHHHhhcccccchhhhhHHHHHHhhh
Confidence 999987 444 499999999999998887663 22 44444444322100 000 0000 00 000000000
Q ss_pred C----------------------ccccccccccc-cccc-----------ChhhhhhhhccchhhhhcccccCceEEEEE
Q 022960 173 G----------------------FIDVRNKKGKL-EYRV-----------TQESLMDRLSTDIHAACHMICQDCRVLTIH 218 (289)
Q Consensus 173 ~----------------------~~~~~~~~~~~-~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~P~l~i~ 218 (289)
. +.......... .... ....+........ .......+++|+++++
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~P~lii~ 240 (582)
T PRK05855 162 WYIYLFHLPVLPELLWRLGLGRAWPRLLRRVEGTPVDPIPTQTTLSDGAHGVKLYRANMIRSL-SRPRERYTDVPVQLIV 240 (582)
T ss_pred HHHHHHhCCCCcHHHhccchhhHHHHhhhhccCCCcchhhhhhhhccccchHHHHHhhhhhhh-ccCccCCccCceEEEE
Confidence 0 00000000000 0000 0000000000000 0001113689999999
Q ss_pred eCCCCccChhhHHHHHhhCCCcEEEEEcCCCcccc-cCchHHHHHHHHHHHhhc
Q 022960 219 GTKDKMVPAEDALEFDKFIPNHKLHIIEGADHEFT-SHQDELASLVIQFIKANY 271 (289)
Q Consensus 219 g~~D~~~~~~~~~~~~~~~~~~~~~~~~~~gH~~~-~~~~~~~~~i~~fl~~~~ 271 (289)
|++|.++|++..+.+.+.+++.+++.++ +||+++ ++++++.+.|.+|+++..
T Consensus 241 G~~D~~v~~~~~~~~~~~~~~~~~~~~~-~gH~~~~e~p~~~~~~i~~fl~~~~ 293 (582)
T PRK05855 241 PTGDPYVRPALYDDLSRWVPRLWRREIK-AGHWLPMSHPQVLAAAVAEFVDAVE 293 (582)
T ss_pred eCCCcccCHHHhccccccCCcceEEEcc-CCCcchhhChhHHHHHHHHHHHhcc
Confidence 9999999999999999888888888887 689965 778899999999998754
No 53
>PRK11071 esterase YqiA; Provisional
Probab=99.93 E-value=1.3e-24 Score=158.73 Aligned_cols=186 Identities=16% Similarity=0.208 Sum_probs=126.6
Q ss_pred cEEEEEcCCCCCCCCcchHHHHHHHHHc--CccEEEEccccCCCCCCCccccchHHHHHHHHHHHHHHHhcCCceEEEEE
Q 022960 46 QLVIVCHGFQSTKDRIPMVNLAAALERE--GISAFRFDFSGNGESEGSFLYGNYRREAEDLRAIVQDFCAKGRVITAIIG 123 (289)
Q Consensus 46 ~~iv~~hG~~~~~~~~~~~~~~~~l~~~--G~~v~~~d~~G~G~s~~~~~~~~~~~~~~d~~~~i~~l~~~~~~~~~l~G 123 (289)
|+||++||++++..+|....+.+.|.+. +|+|+++|+|||+ .+.++++.++++.+ +.++++++|
T Consensus 2 p~illlHGf~ss~~~~~~~~~~~~l~~~~~~~~v~~~dl~g~~-----------~~~~~~l~~l~~~~---~~~~~~lvG 67 (190)
T PRK11071 2 STLLYLHGFNSSPRSAKATLLKNWLAQHHPDIEMIVPQLPPYP-----------ADAAELLESLVLEH---GGDPLGLVG 67 (190)
T ss_pred CeEEEECCCCCCcchHHHHHHHHHHHHhCCCCeEEeCCCCCCH-----------HHHHHHHHHHHHHc---CCCCeEEEE
Confidence 6899999999999762222455667653 6999999999984 34566777777765 677899999
Q ss_pred eChhHHHHHHHHHhCCCccEEEEeccCCcccccccccccchhHhhhhhcCcccccccccccccccChhhhhhhhccchhh
Q 022960 124 HSKGGNAVLLYASKYNDISIVINISGRFNLKRGIEGRLGLGYLQRIKQNGFIDVRNKKGKLEYRVTQESLMDRLSTDIHA 203 (289)
Q Consensus 124 ~S~Gg~~a~~~a~~~p~v~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (289)
|||||.+++.+|.++| . .+|+++|.......+...... .. .......+..+...+.+....+.
T Consensus 68 ~S~Gg~~a~~~a~~~~-~-~~vl~~~~~~~~~~~~~~~~~---------~~----~~~~~~~~~~~~~~~~d~~~~~~-- 130 (190)
T PRK11071 68 SSLGGYYATWLSQCFM-L-PAVVVNPAVRPFELLTDYLGE---------NE----NPYTGQQYVLESRHIYDLKVMQI-- 130 (190)
T ss_pred ECHHHHHHHHHHHHcC-C-CEEEECCCCCHHHHHHHhcCC---------cc----cccCCCcEEEcHHHHHHHHhcCC--
Confidence 9999999999999998 3 457788865532211111110 00 00001112333333333222221
Q ss_pred hhcccccCceEEEEEeCCCCccChhhHHHHHhhCCCcEEEEEcCCCcccccCchHHHHHHHHHHH
Q 022960 204 ACHMICQDCRVLTIHGTKDKMVPAEDALEFDKFIPNHKLHIIEGADHEFTSHQDELASLVIQFIK 268 (289)
Q Consensus 204 ~~~~~~~~~P~l~i~g~~D~~~~~~~~~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~i~~fl~ 268 (289)
..+...+|+++++|++|+++|++.+.++++. ++.+.++|++|.+. +.+++.+.+.+|+.
T Consensus 131 --~~i~~~~~v~iihg~~De~V~~~~a~~~~~~---~~~~~~~ggdH~f~-~~~~~~~~i~~fl~ 189 (190)
T PRK11071 131 --DPLESPDLIWLLQQTGDEVLDYRQAVAYYAA---CRQTVEEGGNHAFV-GFERYFNQIVDFLG 189 (190)
T ss_pred --ccCCChhhEEEEEeCCCCcCCHHHHHHHHHh---cceEEECCCCcchh-hHHHhHHHHHHHhc
Confidence 1123478999999999999999999999884 56778899999984 33788999999974
No 54
>PLN02980 2-oxoglutarate decarboxylase/ hydro-lyase/ magnesium ion binding / thiamin pyrophosphate binding
Probab=99.93 E-value=1.5e-24 Score=201.36 Aligned_cols=219 Identities=18% Similarity=0.209 Sum_probs=144.9
Q ss_pred CCcEEEEEcCCCCCCCCcchHHHHHHHHHcCccEEEEccccCCCCCCCc--------cccchHHHHHHHHHHHHHHHhcC
Q 022960 44 SKQLVIVCHGFQSTKDRIPMVNLAAALEREGISAFRFDFSGNGESEGSF--------LYGNYRREAEDLRAIVQDFCAKG 115 (289)
Q Consensus 44 ~~~~iv~~hG~~~~~~~~~~~~~~~~l~~~G~~v~~~d~~G~G~s~~~~--------~~~~~~~~~~d~~~~i~~l~~~~ 115 (289)
++++|||+||++++... |..+.+.|.+. |+|+++|+||||.|.... ...+++..++++.++++.+ +
T Consensus 1370 ~~~~vVllHG~~~s~~~--w~~~~~~L~~~-~rVi~~Dl~G~G~S~~~~~~~~~~~~~~~si~~~a~~l~~ll~~l---~ 1443 (1655)
T PLN02980 1370 EGSVVLFLHGFLGTGED--WIPIMKAISGS-ARCISIDLPGHGGSKIQNHAKETQTEPTLSVELVADLLYKLIEHI---T 1443 (1655)
T ss_pred CCCeEEEECCCCCCHHH--HHHHHHHHhCC-CEEEEEcCCCCCCCCCccccccccccccCCHHHHHHHHHHHHHHh---C
Confidence 46899999999999864 89999999764 999999999999987532 1345677888888888877 6
Q ss_pred CceEEEEEeChhHHHHHHHHHhCCC-ccEEEEeccCCccccccccccc----chhHhhh--------hhcCcccc-cccc
Q 022960 116 RVITAIIGHSKGGNAVLLYASKYND-ISIVINISGRFNLKRGIEGRLG----LGYLQRI--------KQNGFIDV-RNKK 181 (289)
Q Consensus 116 ~~~~~l~G~S~Gg~~a~~~a~~~p~-v~~~v~~~~~~~~~~~~~~~~~----~~~~~~~--------~~~~~~~~-~~~~ 181 (289)
.++++|+||||||.+++.++.++|+ |+++|++++............. ......+ ....+... ....
T Consensus 1444 ~~~v~LvGhSmGG~iAl~~A~~~P~~V~~lVlis~~p~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~ 1523 (1655)
T PLN02980 1444 PGKVTLVGYSMGARIALYMALRFSDKIEGAVIISGSPGLKDEVARKIRSAKDDSRARMLIDHGLEIFLENWYSGELWKSL 1523 (1655)
T ss_pred CCCEEEEEECHHHHHHHHHHHhChHhhCEEEEECCCCccCchHHHHHHhhhhhHHHHHHHhhhHHHHHHHhccHHHhhhh
Confidence 7799999999999999999999999 9999999865432211100000 0000000 00000000 0000
Q ss_pred -ccccc---------ccChhhhhhhhc-------cchhhhhcccccCceEEEEEeCCCCccChhhHHHHHhhCCC-----
Q 022960 182 -GKLEY---------RVTQESLMDRLS-------TDIHAACHMICQDCRVLTIHGTKDKMVPAEDALEFDKFIPN----- 239 (289)
Q Consensus 182 -~~~~~---------~~~~~~~~~~~~-------~~~~~~~~~~~~~~P~l~i~g~~D~~~~~~~~~~~~~~~~~----- 239 (289)
....+ ......+...+. .+.... ..++++|+|+|+|++|..++ +.++++.+.+++
T Consensus 1524 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~dl~~~--L~~I~~PtLlI~Ge~D~~~~-~~a~~~~~~i~~a~~~~ 1600 (1655)
T PLN02980 1524 RNHPHFNKIVASRLLHKDVPSLAKLLSDLSIGRQPSLWED--LKQCDTPLLLVVGEKDVKFK-QIAQKMYREIGKSKESG 1600 (1655)
T ss_pred ccCHHHHHHHHHHHhcCCHHHHHHHHHHhhhcccchHHHH--HhhCCCCEEEEEECCCCccH-HHHHHHHHHcccccccc
Confidence 00000 000000110000 011111 22568999999999999874 666777777665
Q ss_pred -------cEEEEEcCCCcccc-cCchHHHHHHHHHHHhhc
Q 022960 240 -------HKLHIIEGADHEFT-SHQDELASLVIQFIKANY 271 (289)
Q Consensus 240 -------~~~~~~~~~gH~~~-~~~~~~~~~i~~fl~~~~ 271 (289)
+++++++++||.++ ++++++++.|.+||++..
T Consensus 1601 ~~~~~~~a~lvvI~~aGH~~~lE~Pe~f~~~I~~FL~~~~ 1640 (1655)
T PLN02980 1601 NDKGKEIIEIVEIPNCGHAVHLENPLPVIRALRKFLTRLH 1640 (1655)
T ss_pred ccccccceEEEEECCCCCchHHHCHHHHHHHHHHHHHhcc
Confidence 48999999999966 778899999999999754
No 55
>PLN02872 triacylglycerol lipase
Probab=99.93 E-value=1.7e-24 Score=173.92 Aligned_cols=254 Identities=15% Similarity=0.123 Sum_probs=161.5
Q ss_pred cccceeeEEeeCCCCceEEEEEeecC-------CCcEEEEEcCCCCCCCCcch----HHHHHHHHHcCccEEEEccccCC
Q 022960 18 PVVQRRRVVIPNSHGEKLVGILHETG-------SKQLVIVCHGFQSTKDRIPM----VNLAAALEREGISAFRFDFSGNG 86 (289)
Q Consensus 18 ~~~~~~~~~~~~~~g~~l~~~~~~~~-------~~~~iv~~hG~~~~~~~~~~----~~~~~~l~~~G~~v~~~d~~G~G 86 (289)
.+.+.++..+++.||..|.....+++ ++|+|+++||++.++..|.. ..++..|+++||+|+++|+||++
T Consensus 40 ~gy~~e~h~v~T~DGy~L~l~ri~~~~~~~~~~~~~~Vll~HGl~~ss~~w~~~~~~~sla~~La~~GydV~l~n~RG~~ 119 (395)
T PLN02872 40 AGYSCTEHTIQTKDGYLLALQRVSSRNPRLGSQRGPPVLLQHGLFMAGDAWFLNSPEQSLGFILADHGFDVWVGNVRGTR 119 (395)
T ss_pred cCCCceEEEEECCCCcEEEEEEcCCCCCCCCCCCCCeEEEeCcccccccceeecCcccchHHHHHhCCCCcccccccccc
Confidence 46888999999999999987665421 36899999999988765321 34667789999999999999987
Q ss_pred CCCCC-------c--cccchHHHH-HHHHHHHHHHHhcCCceEEEEEeChhHHHHHHHHHhCCC----ccEEEEeccCCc
Q 022960 87 ESEGS-------F--LYGNYRREA-EDLRAIVQDFCAKGRVITAIIGHSKGGNAVLLYASKYND----ISIVINISGRFN 152 (289)
Q Consensus 87 ~s~~~-------~--~~~~~~~~~-~d~~~~i~~l~~~~~~~~~l~G~S~Gg~~a~~~a~~~p~----v~~~v~~~~~~~ 152 (289)
.|.+. . ...++.+.+ .|+.++++++.+...++++++|||+||.+++.++ ..|+ |+.+++++|...
T Consensus 120 ~s~gh~~~~~~~~~fw~~s~~e~a~~Dl~a~id~i~~~~~~~v~~VGhS~Gg~~~~~~~-~~p~~~~~v~~~~~l~P~~~ 198 (395)
T PLN02872 120 WSYGHVTLSEKDKEFWDWSWQELALYDLAEMIHYVYSITNSKIFIVGHSQGTIMSLAAL-TQPNVVEMVEAAALLCPISY 198 (395)
T ss_pred cccCCCCCCccchhccCCcHHHHHHHHHHHHHHHHHhccCCceEEEEECHHHHHHHHHh-hChHHHHHHHHHHHhcchhh
Confidence 65321 1 134566777 7999999999765457899999999999998554 5665 778888887543
Q ss_pred cc---cccccccc-------------------chhHhhhhhc----C------ccccccccccccc------------cc
Q 022960 153 LK---RGIEGRLG-------------------LGYLQRIKQN----G------FIDVRNKKGKLEY------------RV 188 (289)
Q Consensus 153 ~~---~~~~~~~~-------------------~~~~~~~~~~----~------~~~~~~~~~~~~~------------~~ 188 (289)
.. ..+..... ......+... . +..+......... ..
T Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~C~~~~~c~~~~~~~~g~~~~~n~~~~~~~~~~~pagt 278 (395)
T PLN02872 199 LDHVTAPLVLRMVFMHLDQMVVAMGIHQLNFRSDVLVKLLDSICEGHMDCNDLLTSITGTNCCFNASRIDYYLEYEPHPS 278 (395)
T ss_pred hccCCCHHHHHHHHHhHHHHHHHhcCceecCCcHHHHHHHHHHccCchhHHHHHHHHhCCCcccchhhhhHHHhcCCCcc
Confidence 21 11110000 0000000000 0 0000000000000 00
Q ss_pred Chhhhhhhh---------ccch-------------hhhhccccc--CceEEEEEeCCCCccChhhHHHHHhhCCC-cEEE
Q 022960 189 TQESLMDRL---------STDI-------------HAACHMICQ--DCRVLTIHGTKDKMVPAEDALEFDKFIPN-HKLH 243 (289)
Q Consensus 189 ~~~~~~~~~---------~~~~-------------~~~~~~~~~--~~P~l~i~g~~D~~~~~~~~~~~~~~~~~-~~~~ 243 (289)
+...+..+. ..|+ .......++ ++|+++++|++|.+++++.++.+.+.+++ .+++
T Consensus 279 S~k~~~H~~Q~~~s~~f~~yDyg~~~n~~~Yg~~~pP~Y~l~~i~~~~Pv~i~~G~~D~lv~~~dv~~l~~~Lp~~~~l~ 358 (395)
T PLN02872 279 SVKNLRHLFQMIRKGTFAHYDYGIFKNLKLYGQVNPPAFDLSLIPKSLPLWMGYGGTDGLADVTDVEHTLAELPSKPELL 358 (395)
T ss_pred hHHHHHHHHHHHhcCCcccCCCCchhhHHHhCCCCCCCcCcccCCCCccEEEEEcCCCCCCCHHHHHHHHHHCCCccEEE
Confidence 000000000 0000 001111133 68999999999999999999999999987 6888
Q ss_pred EEcCCCcc--c-c-cCchHHHHHHHHHHHhhcC
Q 022960 244 IIEGADHE--F-T-SHQDELASLVIQFIKANYQ 272 (289)
Q Consensus 244 ~~~~~gH~--~-~-~~~~~~~~~i~~fl~~~~~ 272 (289)
.+++++|. + . +.++++.+.|.+||++..+
T Consensus 359 ~l~~~gH~dfi~~~eape~V~~~Il~fL~~~~~ 391 (395)
T PLN02872 359 YLENYGHIDFLLSTSAKEDVYNHMIQFFRSLGK 391 (395)
T ss_pred EcCCCCCHHHHhCcchHHHHHHHHHHHHHHhhh
Confidence 99999996 2 2 4467899999999987553
No 56
>COG1506 DAP2 Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Amino acid transport and metabolism]
Probab=99.92 E-value=5.9e-24 Score=181.69 Aligned_cols=241 Identities=19% Similarity=0.219 Sum_probs=163.1
Q ss_pred CcccceeeEEeeCCCCceEEEEEeecC---C---CcEEEEEcCCCCCCCCcchHHHHHHHHHcCccEEEEccccCCCCCC
Q 022960 17 DPVVQRRRVVIPNSHGEKLVGILHETG---S---KQLVIVCHGFQSTKDRIPMVNLAAALEREGISAFRFDFSGNGESEG 90 (289)
Q Consensus 17 ~~~~~~~~~~~~~~~g~~l~~~~~~~~---~---~~~iv~~hG~~~~~~~~~~~~~~~~l~~~G~~v~~~d~~G~G~s~~ 90 (289)
....+.+.+++++.||.++.++++.|. + -|+||++||++.....+.+....+.|+.+||.|+.+|+||.+.-..
T Consensus 360 ~~~~~~e~~~~~~~dG~~i~~~l~~P~~~~~~k~yP~i~~~hGGP~~~~~~~~~~~~q~~~~~G~~V~~~n~RGS~GyG~ 439 (620)
T COG1506 360 VKLAEPEPVTYKSNDGETIHGWLYKPPGFDPRKKYPLIVYIHGGPSAQVGYSFNPEIQVLASAGYAVLAPNYRGSTGYGR 439 (620)
T ss_pred cccCCceEEEEEcCCCCEEEEEEecCCCCCCCCCCCEEEEeCCCCccccccccchhhHHHhcCCeEEEEeCCCCCCccHH
Confidence 344667889999999999999988764 1 2799999999865544557788899999999999999997544322
Q ss_pred Ccc---cc-chHHHHHHHHHHHHHHHhc---CCceEEEEEeChhHHHHHHHHHhCCCccEEEEeccCCcccccccccccc
Q 022960 91 SFL---YG-NYRREAEDLRAIVQDFCAK---GRVITAIIGHSKGGNAVLLYASKYNDISIVINISGRFNLKRGIEGRLGL 163 (289)
Q Consensus 91 ~~~---~~-~~~~~~~d~~~~i~~l~~~---~~~~~~l~G~S~Gg~~a~~~a~~~p~v~~~v~~~~~~~~~~~~~~~~~~ 163 (289)
.+. .. --....+|+.++++++.+. +.+++++.|+|+||++++..+.+.|.+++.+...+..+..........
T Consensus 440 ~F~~~~~~~~g~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~SyGGymtl~~~~~~~~f~a~~~~~~~~~~~~~~~~~~~- 518 (620)
T COG1506 440 EFADAIRGDWGGVDLEDLIAAVDALVKLPLVDPERIGITGGSYGGYMTLLAATKTPRFKAAVAVAGGVDWLLYFGESTE- 518 (620)
T ss_pred HHHHhhhhccCCccHHHHHHHHHHHHhCCCcChHHeEEeccChHHHHHHHHHhcCchhheEEeccCcchhhhhccccch-
Confidence 111 10 1123468888888877666 456999999999999999999999887777777665443221111000
Q ss_pred hhHhhhhhcCcccccccccccccccChhhhhhhhccchhhhhcccccCceEEEEEeCCCCccChhhHHHHHhhCC----C
Q 022960 164 GYLQRIKQNGFIDVRNKKGKLEYRVTQESLMDRLSTDIHAACHMICQDCRVLTIHGTKDKMVPAEDALEFDKFIP----N 239 (289)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~i~g~~D~~~~~~~~~~~~~~~~----~ 239 (289)
.+...... ....... ..+.+.. ...... ..++++|+|+|||++|..||.++++.+.+.+. +
T Consensus 519 ~~~~~~~~---------~~~~~~~-~~~~~~~---~sp~~~--~~~i~~P~LliHG~~D~~v~~~q~~~~~~aL~~~g~~ 583 (620)
T COG1506 519 GLRFDPEE---------NGGGPPE-DREKYED---RSPIFY--ADNIKTPLLLIHGEEDDRVPIEQAEQLVDALKRKGKP 583 (620)
T ss_pred hhcCCHHH---------hCCCccc-ChHHHHh---cChhhh--hcccCCCEEEEeecCCccCChHHHHHHHHHHHHcCce
Confidence 00000000 0000000 1111111 111111 12559999999999999999999998887764 4
Q ss_pred cEEEEEcCCCccccc--CchHHHHHHHHHHHhhcCC
Q 022960 240 HKLHIIEGADHEFTS--HQDELASLVIQFIKANYQK 273 (289)
Q Consensus 240 ~~~~~~~~~gH~~~~--~~~~~~~~i~~fl~~~~~~ 273 (289)
++++++|+.+|.+.. +..+..+.+.+|+++++..
T Consensus 584 ~~~~~~p~e~H~~~~~~~~~~~~~~~~~~~~~~~~~ 619 (620)
T COG1506 584 VELVVFPDEGHGFSRPENRVKVLKEILDWFKRHLKQ 619 (620)
T ss_pred EEEEEeCCCCcCCCCchhHHHHHHHHHHHHHHHhcC
Confidence 799999999999753 3457899999999988753
No 57
>KOG2382 consensus Predicted alpha/beta hydrolase [General function prediction only]
Probab=99.92 E-value=1.6e-23 Score=158.16 Aligned_cols=224 Identities=22% Similarity=0.304 Sum_probs=159.1
Q ss_pred CCCcEEEEEcCCCCCCCCcchHHHHHHHHHc-CccEEEEccccCCCCCCCccccchHHHHHHHHHHHHHHHhc-CCceEE
Q 022960 43 GSKQLVIVCHGFQSTKDRIPMVNLAAALERE-GISAFRFDFSGNGESEGSFLYGNYRREAEDLRAIVQDFCAK-GRVITA 120 (289)
Q Consensus 43 ~~~~~iv~~hG~~~~~~~~~~~~~~~~l~~~-G~~v~~~d~~G~G~s~~~~~~~~~~~~~~d~~~~i~~l~~~-~~~~~~ 120 (289)
+..|+++++||+.++... |+.+...|+.. |..|+++|.|.||.|..... .++..+++|+..+|+..... ...++.
T Consensus 50 ~~~Pp~i~lHGl~GS~~N--w~sv~k~Ls~~l~~~v~~vd~RnHG~Sp~~~~-h~~~~ma~dv~~Fi~~v~~~~~~~~~~ 126 (315)
T KOG2382|consen 50 ERAPPAIILHGLLGSKEN--WRSVAKNLSRKLGRDVYAVDVRNHGSSPKITV-HNYEAMAEDVKLFIDGVGGSTRLDPVV 126 (315)
T ss_pred CCCCceEEecccccCCCC--HHHHHHHhcccccCceEEEecccCCCCccccc-cCHHHHHHHHHHHHHHcccccccCCce
Confidence 378999999999999976 99999999877 78999999999999986543 35789999999999988643 355899
Q ss_pred EEEeChhH-HHHHHHHHhCCC-ccEEEEeccCC-cccccccc------------------cccchhHhhh----------
Q 022960 121 IIGHSKGG-NAVLLYASKYND-ISIVINISGRF-NLKRGIEG------------------RLGLGYLQRI---------- 169 (289)
Q Consensus 121 l~G~S~Gg-~~a~~~a~~~p~-v~~~v~~~~~~-~~~~~~~~------------------~~~~~~~~~~---------- 169 (289)
++|||||| .+++..+...|+ +..+|++.-.. ........ .-.......+
T Consensus 127 l~GHsmGG~~~~m~~t~~~p~~~~rliv~D~sP~~~~~~~~e~~e~i~~m~~~d~~~~~~~~rke~~~~l~~~~~d~~~~ 206 (315)
T KOG2382|consen 127 LLGHSMGGVKVAMAETLKKPDLIERLIVEDISPGGVGRSYGEYRELIKAMIQLDLSIGVSRGRKEALKSLIEVGFDNLVR 206 (315)
T ss_pred ecccCcchHHHHHHHHHhcCcccceeEEEecCCccCCcccchHHHHHHHHHhccccccccccHHHHHHHHHHHhcchHHH
Confidence 99999999 778888888898 77777664322 11100000 0000011111
Q ss_pred --hhcCcccccccccccccccChhhhhhhhcc----chhhhhcccccCceEEEEEeCCCCccChhhHHHHHhhCCCcEEE
Q 022960 170 --KQNGFIDVRNKKGKLEYRVTQESLMDRLST----DIHAACHMICQDCRVLTIHGTKDKMVPAEDALEFDKFIPNHKLH 243 (289)
Q Consensus 170 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~P~l~i~g~~D~~~~~~~~~~~~~~~~~~~~~ 243 (289)
....+.. ........|......+.+.+.. .+...........|||+++|.++..++.+....+.+.+|+++++
T Consensus 207 ~fi~~nl~~-~~~~~s~~w~~nl~~i~~~~~~~~~~s~~~~l~~~~~~~pvlfi~g~~S~fv~~~~~~~~~~~fp~~e~~ 285 (315)
T KOG2382|consen 207 QFILTNLKK-SPSDGSFLWRVNLDSIASLLDEYEILSYWADLEDGPYTGPVLFIKGLQSKFVPDEHYPRMEKIFPNVEVH 285 (315)
T ss_pred HHHHHhcCc-CCCCCceEEEeCHHHHHHHHHHHHhhcccccccccccccceeEEecCCCCCcChhHHHHHHHhccchhee
Confidence 1111111 2233444555555554444433 11112211344789999999999999999999999999999999
Q ss_pred EEcCCCcccc-cCchHHHHHHHHHHHhh
Q 022960 244 IIEGADHEFT-SHQDELASLVIQFIKAN 270 (289)
Q Consensus 244 ~~~~~gH~~~-~~~~~~~~~i~~fl~~~ 270 (289)
.++++||+.+ +.|+++.+.|.+|++..
T Consensus 286 ~ld~aGHwVh~E~P~~~~~~i~~Fl~~~ 313 (315)
T KOG2382|consen 286 ELDEAGHWVHLEKPEEFIESISEFLEEP 313 (315)
T ss_pred ecccCCceeecCCHHHHHHHHHHHhccc
Confidence 9999999987 67889999999998754
No 58
>COG0429 Predicted hydrolase of the alpha/beta-hydrolase fold [General function prediction only]
Probab=99.91 E-value=1.9e-23 Score=157.25 Aligned_cols=253 Identities=21% Similarity=0.266 Sum_probs=156.4
Q ss_pred cceeeEEeeCCCCceEEEEEee-cC--CCcEEEEEcCCCCCCCCcchHHHHHHHHHcCccEEEEccccCCCCCCCccccc
Q 022960 20 VQRRRVVIPNSHGEKLVGILHE-TG--SKQLVIVCHGFQSTKDRIPMVNLAAALEREGISAFRFDFSGNGESEGSFLYGN 96 (289)
Q Consensus 20 ~~~~~~~~~~~~g~~l~~~~~~-~~--~~~~iv~~hG~~~~~~~~~~~~~~~~l~~~G~~v~~~d~~G~G~s~~~~~~~~ 96 (289)
+..+...+..+||..+...+.. +. .+|.||++||+.|+.++.+.+.+.+.+.++||.|+++++|||+.+........
T Consensus 47 ~~~~re~v~~pdg~~~~ldw~~~p~~~~~P~vVl~HGL~G~s~s~y~r~L~~~~~~rg~~~Vv~~~Rgcs~~~n~~p~~y 126 (345)
T COG0429 47 VAYTRERLETPDGGFIDLDWSEDPRAAKKPLVVLFHGLEGSSNSPYARGLMRALSRRGWLVVVFHFRGCSGEANTSPRLY 126 (345)
T ss_pred cccceEEEEcCCCCEEEEeeccCccccCCceEEEEeccCCCCcCHHHHHHHHHHHhcCCeEEEEecccccCCcccCccee
Confidence 3444456666777665544443 32 67899999999999888788889999999999999999999998876443222
Q ss_pred hHHHHHHHHHHHHHHHhc-CCceEEEEEeChhHHHHHHHHHhC-CC--ccEEEEeccCCccccc-------cc-ccccch
Q 022960 97 YRREAEDLRAIVQDFCAK-GRVITAIIGHSKGGNAVLLYASKY-ND--ISIVINISGRFNLKRG-------IE-GRLGLG 164 (289)
Q Consensus 97 ~~~~~~d~~~~i~~l~~~-~~~~~~l~G~S~Gg~~a~~~a~~~-p~--v~~~v~~~~~~~~~~~-------~~-~~~~~~ 164 (289)
-..+.+|+..++++++.. ...++..+|.|+||.+...+..+. .+ +.+.+.++.++++... .. ......
T Consensus 127 h~G~t~D~~~~l~~l~~~~~~r~~~avG~SLGgnmLa~ylgeeg~d~~~~aa~~vs~P~Dl~~~~~~l~~~~s~~ly~r~ 206 (345)
T COG0429 127 HSGETEDIRFFLDWLKARFPPRPLYAVGFSLGGNMLANYLGEEGDDLPLDAAVAVSAPFDLEACAYRLDSGFSLRLYSRY 206 (345)
T ss_pred cccchhHHHHHHHHHHHhCCCCceEEEEecccHHHHHHHHHhhccCcccceeeeeeCHHHHHHHHHHhcCchhhhhhHHH
Confidence 244459999999999886 566899999999995555555544 33 7777777766654211 11 111111
Q ss_pred hHhhhhhc---Ccccccc-cccc---cccc-cChhhhhhhhc---------cchhhhhc----ccccCceEEEEEeCCCC
Q 022960 165 YLQRIKQN---GFIDVRN-KKGK---LEYR-VTQESLMDRLS---------TDIHAACH----MICQDCRVLTIHGTKDK 223 (289)
Q Consensus 165 ~~~~~~~~---~~~~~~~-~~~~---~~~~-~~~~~~~~~~~---------~~~~~~~~----~~~~~~P~l~i~g~~D~ 223 (289)
+.+.+.+. ....... .... ...+ .+...+.+.+. .++..... ..+|.+|+|+|++.+|+
T Consensus 207 l~~~L~~~~~~kl~~l~~~~p~~~~~~ik~~~ti~eFD~~~Tap~~Gf~da~dYYr~aSs~~~L~~Ir~PtLii~A~DDP 286 (345)
T COG0429 207 LLRNLKRNAARKLKELEPSLPGTVLAAIKRCRTIREFDDLLTAPLHGFADAEDYYRQASSLPLLPKIRKPTLIINAKDDP 286 (345)
T ss_pred HHHHHHHHHHHHHHhcCcccCcHHHHHHHhhchHHhccceeeecccCCCcHHHHHHhccccccccccccceEEEecCCCC
Confidence 11111110 0000000 0000 0000 00000001110 11111111 11579999999999999
Q ss_pred ccChhhHHHHHh-hCCCcEEEEEcCCCcc-ccc----Cch-HHHHHHHHHHHhhcC
Q 022960 224 MVPAEDALEFDK-FIPNHKLHIIEGADHE-FTS----HQD-ELASLVIQFIKANYQ 272 (289)
Q Consensus 224 ~~~~~~~~~~~~-~~~~~~~~~~~~~gH~-~~~----~~~-~~~~~i~~fl~~~~~ 272 (289)
+++++..-.... ..|++.+...+.+||. +.. ++. ...+.+.+||+..++
T Consensus 287 ~~~~~~iP~~~~~~np~v~l~~t~~GGHvGfl~~~~~~~~~W~~~ri~~~l~~~~~ 342 (345)
T COG0429 287 FMPPEVIPKLQEMLNPNVLLQLTEHGGHVGFLGGKLLHPQMWLEQRILDWLDPFLE 342 (345)
T ss_pred CCChhhCCcchhcCCCceEEEeecCCceEEeccCccccchhhHHHHHHHHHHHHHh
Confidence 999877666655 6788999999999999 443 222 567788999987654
No 59
>KOG2984 consensus Predicted hydrolase [General function prediction only]
Probab=99.91 E-value=2.3e-24 Score=149.77 Aligned_cols=232 Identities=18% Similarity=0.187 Sum_probs=150.1
Q ss_pred CCceEEEEEeecCCCcEEEEEcCCCCCCCCcchHHHHHHHHHc-CccEEEEccccCCCCCCCccccchHHHHHHHHHHHH
Q 022960 31 HGEKLVGILHETGSKQLVIVCHGFQSTKDRIPMVNLAAALERE-GISAFRFDFSGNGESEGSFLYGNYRREAEDLRAIVQ 109 (289)
Q Consensus 31 ~g~~l~~~~~~~~~~~~iv~~hG~~~~~~~~~~~~~~~~l~~~-G~~v~~~d~~G~G~s~~~~~~~~~~~~~~d~~~~i~ 109 (289)
+|.++.+.-++.|+ ..|++++|.-++... .|.+....|.+. -+.|+++|.||+|.|..+......+...+|...+++
T Consensus 29 ng~ql~y~~~G~G~-~~iLlipGalGs~~t-Df~pql~~l~k~l~~TivawDPpGYG~SrPP~Rkf~~~ff~~Da~~avd 106 (277)
T KOG2984|consen 29 NGTQLGYCKYGHGP-NYILLIPGALGSYKT-DFPPQLLSLFKPLQVTIVAWDPPGYGTSRPPERKFEVQFFMKDAEYAVD 106 (277)
T ss_pred cCceeeeeecCCCC-ceeEecccccccccc-cCCHHHHhcCCCCceEEEEECCCCCCCCCCCcccchHHHHHHhHHHHHH
Confidence 47788854444333 367888888777653 355555555443 388999999999999877655444444455555554
Q ss_pred HHHhcCCceEEEEEeChhHHHHHHHHHhCCC-ccEEEEeccCCcccccccccc-c----chhHhhhhhcCcccccccccc
Q 022960 110 DFCAKGRVITAIIGHSKGGNAVLLYASKYND-ISIVINISGRFNLKRGIEGRL-G----LGYLQRIKQNGFIDVRNKKGK 183 (289)
Q Consensus 110 ~l~~~~~~~~~l~G~S~Gg~~a~~~a~~~p~-v~~~v~~~~~~~~~~~~~~~~-~----~~~~~~~~~~~~~~~~~~~~~ 183 (289)
-++..+.+++.++|+|-||..|+.+|+++++ |..+|+.++.......-...+ + ..|.... ++++.+ ..+.
T Consensus 107 LM~aLk~~~fsvlGWSdGgiTalivAak~~e~v~rmiiwga~ayvn~~~~ma~kgiRdv~kWs~r~-R~P~e~---~Yg~ 182 (277)
T KOG2984|consen 107 LMEALKLEPFSVLGWSDGGITALIVAAKGKEKVNRMIIWGAAAYVNHLGAMAFKGIRDVNKWSARG-RQPYED---HYGP 182 (277)
T ss_pred HHHHhCCCCeeEeeecCCCeEEEEeeccChhhhhhheeecccceecchhHHHHhchHHHhhhhhhh-cchHHH---hcCH
Confidence 4444488899999999999999999999999 999999887544332111000 0 0011110 001100 0001
Q ss_pred cccccChhhhhhhh-------ccchhhhhcccccCceEEEEEeCCCCccChhhHHHHHhhCCCcEEEEEcCCCcccc-cC
Q 022960 184 LEYRVTQESLMDRL-------STDIHAACHMICQDCRVLTIHGTKDKMVPAEDALEFDKFIPNHKLHIIEGADHEFT-SH 255 (289)
Q Consensus 184 ~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~P~l~i~g~~D~~~~~~~~~~~~~~~~~~~~~~~~~~gH~~~-~~ 255 (289)
..++.....+.+.. ..+. -.....+++||+|++||++|++++...+-.+....+.+++.+.|.++|.++ ..
T Consensus 183 e~f~~~wa~wvD~v~qf~~~~dG~f-Cr~~lp~vkcPtli~hG~kDp~~~~~hv~fi~~~~~~a~~~~~peGkHn~hLry 261 (277)
T KOG2984|consen 183 ETFRTQWAAWVDVVDQFHSFCDGRF-CRLVLPQVKCPTLIMHGGKDPFCGDPHVCFIPVLKSLAKVEIHPEGKHNFHLRY 261 (277)
T ss_pred HHHHHHHHHHHHHHHHHhhcCCCch-HhhhcccccCCeeEeeCCcCCCCCCCCccchhhhcccceEEEccCCCcceeeec
Confidence 11111111111111 0111 111222679999999999999999999988999999999999999999987 55
Q ss_pred chHHHHHHHHHHHh
Q 022960 256 QDELASLVIQFIKA 269 (289)
Q Consensus 256 ~~~~~~~i~~fl~~ 269 (289)
+++++..+.+||++
T Consensus 262 a~eFnklv~dFl~~ 275 (277)
T KOG2984|consen 262 AKEFNKLVLDFLKS 275 (277)
T ss_pred hHHHHHHHHHHHhc
Confidence 78999999999975
No 60
>PF12695 Abhydrolase_5: Alpha/beta hydrolase family; PDB: 3D0K_B 2I3D_B 3DOH_B 3DOI_B 3PFB_A 3S2Z_B 3PFC_A 3QM1_A 3PF8_B 3PF9_A ....
Probab=99.91 E-value=2.9e-23 Score=146.46 Aligned_cols=142 Identities=29% Similarity=0.477 Sum_probs=112.4
Q ss_pred EEEEEcCCCCCCCCcchHHHHHHHHHcCccEEEEccccCCCCCCCccccchHHHHHHHHHHHHHHHh--cCCceEEEEEe
Q 022960 47 LVIVCHGFQSTKDRIPMVNLAAALEREGISAFRFDFSGNGESEGSFLYGNYRREAEDLRAIVQDFCA--KGRVITAIIGH 124 (289)
Q Consensus 47 ~iv~~hG~~~~~~~~~~~~~~~~l~~~G~~v~~~d~~G~G~s~~~~~~~~~~~~~~d~~~~i~~l~~--~~~~~~~l~G~ 124 (289)
+||++||++++... |..+++.|+++||.|+.+|+|++|.+... .++.++++.+.. .+.++++++||
T Consensus 1 ~vv~~HG~~~~~~~--~~~~~~~l~~~G~~v~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~i~l~G~ 68 (145)
T PF12695_consen 1 VVVLLHGWGGSRRD--YQPLAEALAEQGYAVVAFDYPGHGDSDGA----------DAVERVLADIRAGYPDPDRIILIGH 68 (145)
T ss_dssp EEEEECTTTTTTHH--HHHHHHHHHHTTEEEEEESCTTSTTSHHS----------HHHHHHHHHHHHHHCTCCEEEEEEE
T ss_pred CEEEECCCCCCHHH--HHHHHHHHHHCCCEEEEEecCCCCccchh----------HHHHHHHHHHHhhcCCCCcEEEEEE
Confidence 68999999998754 89999999999999999999999987321 244444444311 27789999999
Q ss_pred ChhHHHHHHHHHhCCCccEEEEeccCCcccccccccccchhHhhhhhcCcccccccccccccccChhhhhhhhccchhhh
Q 022960 125 SKGGNAVLLYASKYNDISIVINISGRFNLKRGIEGRLGLGYLQRIKQNGFIDVRNKKGKLEYRVTQESLMDRLSTDIHAA 204 (289)
Q Consensus 125 S~Gg~~a~~~a~~~p~v~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (289)
|+||.+++.++.+.+.++++|++++... .. .
T Consensus 69 S~Gg~~a~~~~~~~~~v~~~v~~~~~~~-~~------------------------------------~------------ 99 (145)
T PF12695_consen 69 SMGGAIAANLAARNPRVKAVVLLSPYPD-SE------------------------------------D------------ 99 (145)
T ss_dssp THHHHHHHHHHHHSTTESEEEEESESSG-CH------------------------------------H------------
T ss_pred ccCcHHHHHHhhhccceeEEEEecCccc-hh------------------------------------h------------
Confidence 9999999999999877999999998211 00 0
Q ss_pred hcccccCceEEEEEeCCCCccChhhHHHHHhhCC-CcEEEEEcCCCcc
Q 022960 205 CHMICQDCRVLTIHGTKDKMVPAEDALEFDKFIP-NHKLHIIEGADHE 251 (289)
Q Consensus 205 ~~~~~~~~P~l~i~g~~D~~~~~~~~~~~~~~~~-~~~~~~~~~~gH~ 251 (289)
.. +.+.|+++++|++|..++.+..+.+.+.++ +.+++++++++|+
T Consensus 100 ~~--~~~~pv~~i~g~~D~~~~~~~~~~~~~~~~~~~~~~~i~g~~H~ 145 (145)
T PF12695_consen 100 LA--KIRIPVLFIHGENDPLVPPEQVRRLYEALPGPKELYIIPGAGHF 145 (145)
T ss_dssp HT--TTTSEEEEEEETT-SSSHHHHHHHHHHHHCSSEEEEEETTS-TT
T ss_pred hh--ccCCcEEEEEECCCCcCCHHHHHHHHHHcCCCcEEEEeCCCcCc
Confidence 00 226799999999999999999999988887 5899999999995
No 61
>TIGR03101 hydr2_PEP hydrolase, ortholog 2, exosortase system type 1 associated. This group of proteins are members of the alpha/beta hydrolase superfamily. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system, specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present in the vicinity of a second, relatively unrelated enzyme (ortholog 1, TIGR03100) of the same superfamily.
Probab=99.90 E-value=8.5e-22 Score=149.82 Aligned_cols=130 Identities=18% Similarity=0.215 Sum_probs=105.3
Q ss_pred eEEeeCCCCceEEEEEeec-C--CCcEEEEEcCCCCCCCC--cchHHHHHHHHHcCccEEEEccccCCCCCCCccccchH
Q 022960 24 RVVIPNSHGEKLVGILHET-G--SKQLVIVCHGFQSTKDR--IPMVNLAAALEREGISAFRFDFSGNGESEGSFLYGNYR 98 (289)
Q Consensus 24 ~~~~~~~~g~~l~~~~~~~-~--~~~~iv~~hG~~~~~~~--~~~~~~~~~l~~~G~~v~~~d~~G~G~s~~~~~~~~~~ 98 (289)
.+.+++..|. +.++++.+ + ++++||++||+++.... ..|..+++.|+++||.|+.+|+||||.|.+.....++.
T Consensus 2 ~~~l~~~~g~-~~~~~~~p~~~~~~~~VlllHG~g~~~~~~~~~~~~la~~La~~Gy~Vl~~Dl~G~G~S~g~~~~~~~~ 80 (266)
T TIGR03101 2 PFFLDAPHGF-RFCLYHPPVAVGPRGVVIYLPPFAEEMNKSRRMVALQARAFAAGGFGVLQIDLYGCGDSAGDFAAARWD 80 (266)
T ss_pred CEEecCCCCc-EEEEEecCCCCCCceEEEEECCCcccccchhHHHHHHHHHHHHCCCEEEEECCCCCCCCCCccccCCHH
Confidence 3566766665 44545544 3 35789999999875321 34777899999999999999999999998766556778
Q ss_pred HHHHHHHHHHHHHHhcCCceEEEEEeChhHHHHHHHHHhCCC-ccEEEEeccCCccc
Q 022960 99 REAEDLRAIVQDFCAKGRVITAIIGHSKGGNAVLLYASKYND-ISIVINISGRFNLK 154 (289)
Q Consensus 99 ~~~~d~~~~i~~l~~~~~~~~~l~G~S~Gg~~a~~~a~~~p~-v~~~v~~~~~~~~~ 154 (289)
.+++|+..+++++++.+..+++|+||||||.+++.++.++|+ ++++|+++|.....
T Consensus 81 ~~~~Dv~~ai~~L~~~~~~~v~LvG~SmGG~vAl~~A~~~p~~v~~lVL~~P~~~g~ 137 (266)
T TIGR03101 81 VWKEDVAAAYRWLIEQGHPPVTLWGLRLGALLALDAANPLAAKCNRLVLWQPVVSGK 137 (266)
T ss_pred HHHHHHHHHHHHHHhcCCCCEEEEEECHHHHHHHHHHHhCccccceEEEeccccchH
Confidence 889999999999987777899999999999999999999988 99999999876544
No 62
>COG2945 Predicted hydrolase of the alpha/beta superfamily [General function prediction only]
Probab=99.90 E-value=3.3e-22 Score=138.31 Aligned_cols=195 Identities=26% Similarity=0.343 Sum_probs=150.9
Q ss_pred eeeEEeeCCCCceEEEEEeecC--CCcEEEEEcCC---CCCCCCcchHHHHHHHHHcCccEEEEccccCCCCCCCccccc
Q 022960 22 RRRVVIPNSHGEKLVGILHETG--SKQLVIVCHGF---QSTKDRIPMVNLAAALEREGISAFRFDFSGNGESEGSFLYGN 96 (289)
Q Consensus 22 ~~~~~~~~~~g~~l~~~~~~~~--~~~~iv~~hG~---~~~~~~~~~~~~~~~l~~~G~~v~~~d~~G~G~s~~~~~~~~ 96 (289)
..++.++..-| .+.+.+..++ ..|+.|++|.- +|+..+.....++..|.++||.++.+|+||.|.|.+..+..
T Consensus 4 ~~~v~i~Gp~G-~le~~~~~~~~~~~~iAli~HPHPl~gGtm~nkvv~~la~~l~~~G~atlRfNfRgVG~S~G~fD~G- 81 (210)
T COG2945 4 MPTVIINGPAG-RLEGRYEPAKTPAAPIALICHPHPLFGGTMNNKVVQTLARALVKRGFATLRFNFRGVGRSQGEFDNG- 81 (210)
T ss_pred CCcEEecCCcc-cceeccCCCCCCCCceEEecCCCccccCccCCHHHHHHHHHHHhCCceEEeecccccccccCcccCC-
Confidence 34566766655 3665555544 67888999974 34444445777889999999999999999999999987654
Q ss_pred hHHHHHHHHHHHHHHHhcCCc--eEEEEEeChhHHHHHHHHHhCCCccEEEEeccCCcccccccccccchhHhhhhhcCc
Q 022960 97 YRREAEDLRAIVQDFCAKGRV--ITAIIGHSKGGNAVLLYASKYNDISIVINISGRFNLKRGIEGRLGLGYLQRIKQNGF 174 (289)
Q Consensus 97 ~~~~~~d~~~~i~~l~~~~~~--~~~l~G~S~Gg~~a~~~a~~~p~v~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (289)
....+|..++++|++.+... ...|.|+|+|+++++.+|.+.|+....+.+.|........
T Consensus 82 -iGE~~Da~aaldW~~~~hp~s~~~~l~GfSFGa~Ia~~la~r~~e~~~~is~~p~~~~~dfs----------------- 143 (210)
T COG2945 82 -IGELEDAAAALDWLQARHPDSASCWLAGFSFGAYIAMQLAMRRPEILVFISILPPINAYDFS----------------- 143 (210)
T ss_pred -cchHHHHHHHHHHHHhhCCCchhhhhcccchHHHHHHHHHHhcccccceeeccCCCCchhhh-----------------
Confidence 33468999999999988433 2368999999999999999999977777777654411000
Q ss_pred ccccccccccccccChhhhhhhhccchhhhhcccccCceEEEEEeCCCCccChhhHHHHHhhCCCcEEEEEcCCCccccc
Q 022960 175 IDVRNKKGKLEYRVTQESLMDRLSTDIHAACHMICQDCRVLTIHGTKDKMVPAEDALEFDKFIPNHKLHIIEGADHEFTS 254 (289)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~i~g~~D~~~~~~~~~~~~~~~~~~~~~~~~~~gH~~~~ 254 (289)
......+|.++|+|+.|.+++.....++++. ...+++.+++++|+|+.
T Consensus 144 -------------------------------~l~P~P~~~lvi~g~~Ddvv~l~~~l~~~~~-~~~~~i~i~~a~HFF~g 191 (210)
T COG2945 144 -------------------------------FLAPCPSPGLVIQGDADDVVDLVAVLKWQES-IKITVITIPGADHFFHG 191 (210)
T ss_pred -------------------------------hccCCCCCceeEecChhhhhcHHHHHHhhcC-CCCceEEecCCCceecc
Confidence 0002367999999999999999888888877 56788999999999998
Q ss_pred CchHHHHHHHHHHH
Q 022960 255 HQDELASLVIQFIK 268 (289)
Q Consensus 255 ~~~~~~~~i~~fl~ 268 (289)
.-..+.+.+.+|+.
T Consensus 192 Kl~~l~~~i~~~l~ 205 (210)
T COG2945 192 KLIELRDTIADFLE 205 (210)
T ss_pred cHHHHHHHHHHHhh
Confidence 88899999999995
No 63
>KOG1838 consensus Alpha/beta hydrolase [General function prediction only]
Probab=99.90 E-value=2e-21 Score=151.75 Aligned_cols=256 Identities=20% Similarity=0.239 Sum_probs=164.8
Q ss_pred CCcccceeeEEeeCCCCceEEEEEeec---------CCCcEEEEEcCCCCCCCCcchHHHHHHHHHcCccEEEEccccCC
Q 022960 16 QDPVVQRRRVVIPNSHGEKLVGILHET---------GSKQLVIVCHGFQSTKDRIPMVNLAAALEREGISAFRFDFSGNG 86 (289)
Q Consensus 16 ~~~~~~~~~~~~~~~~g~~l~~~~~~~---------~~~~~iv~~hG~~~~~~~~~~~~~~~~l~~~G~~v~~~d~~G~G 86 (289)
..+.+..++.-++..||..+...+..+ +..|+||++||..+++...+.+.++..+.++||+|++++.||+|
T Consensus 87 ~~p~~~y~Reii~~~DGG~~~lDW~~~~~~~~~~~~~~~P~vvilpGltg~S~~~YVr~lv~~a~~~G~r~VVfN~RG~~ 166 (409)
T KOG1838|consen 87 SKPPVEYTREIIKTSDGGTVTLDWVENPDSRCRTDDGTDPIVVILPGLTGGSHESYVRHLVHEAQRKGYRVVVFNHRGLG 166 (409)
T ss_pred CCCCCcceeEEEEeCCCCEEEEeeccCcccccCCCCCCCcEEEEecCCCCCChhHHHHHHHHHHHhCCcEEEEECCCCCC
Confidence 345677788888889999888766532 24599999999998887767888999999999999999999999
Q ss_pred CCCCCccccchHHHHHHHHHHHHHHHhc-CCceEEEEEeChhHHHHHHHHHhCCC---ccEEEEeccCCcc---cccccc
Q 022960 87 ESEGSFLYGNYRREAEDLRAIVQDFCAK-GRVITAIIGHSKGGNAVLLYASKYND---ISIVINISGRFNL---KRGIEG 159 (289)
Q Consensus 87 ~s~~~~~~~~~~~~~~d~~~~i~~l~~~-~~~~~~l~G~S~Gg~~a~~~a~~~p~---v~~~v~~~~~~~~---~~~~~~ 159 (289)
.+.-.....--..+.+|+.+++++++++ ...++..+|.||||.+.+.++.+..+ +.+.+.++.+++. ...+..
T Consensus 167 g~~LtTpr~f~ag~t~Dl~~~v~~i~~~~P~a~l~avG~S~Gg~iL~nYLGE~g~~~~l~~a~~v~~Pwd~~~~~~~~~~ 246 (409)
T KOG1838|consen 167 GSKLTTPRLFTAGWTEDLREVVNHIKKRYPQAPLFAVGFSMGGNILTNYLGEEGDNTPLIAAVAVCNPWDLLAASRSIET 246 (409)
T ss_pred CCccCCCceeecCCHHHHHHHHHHHHHhCCCCceEEEEecchHHHHHHHhhhccCCCCceeEEEEeccchhhhhhhHHhc
Confidence 8875543332345679999999999888 44579999999999999999988644 5555555554553 222222
Q ss_pred cccchhHhhhhhcCcccccccc-----------cccccccChhhhhhhhcc---------chhhh----hcccccCceEE
Q 022960 160 RLGLGYLQRIKQNGFIDVRNKK-----------GKLEYRVTQESLMDRLST---------DIHAA----CHMICQDCRVL 215 (289)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~---------~~~~~----~~~~~~~~P~l 215 (289)
.....+................ .......+...+.+.+.. ++... ..-.+|++|+|
T Consensus 247 ~~~~~~y~~~l~~~l~~~~~~~r~~~~~~~vd~d~~~~~~SvreFD~~~t~~~~gf~~~deYY~~aSs~~~v~~I~VP~L 326 (409)
T KOG1838|consen 247 PLYRRFYNRALTLNLKRIVLRHRHTLFEDPVDFDVILKSRSVREFDEALTRPMFGFKSVDEYYKKASSSNYVDKIKVPLL 326 (409)
T ss_pred ccchHHHHHHHHHhHHHHHhhhhhhhhhccchhhhhhhcCcHHHHHhhhhhhhcCCCcHHHHHhhcchhhhcccccccEE
Confidence 2222222222222111110000 000000111111111110 00100 11115699999
Q ss_pred EEEeCCCCccChh-hHHHHHhhCCCcEEEEEcCCCcc-cccC----chHHHHH-HHHHHHhhc
Q 022960 216 TIHGTKDKMVPAE-DALEFDKFIPNHKLHIIEGADHE-FTSH----QDELASL-VIQFIKANY 271 (289)
Q Consensus 216 ~i~g~~D~~~~~~-~~~~~~~~~~~~~~~~~~~~gH~-~~~~----~~~~~~~-i~~fl~~~~ 271 (289)
+|++.+|+++|.+ .-....+..|++-+.+-..+||. +++. +..+.+. +.+|+....
T Consensus 327 ~ina~DDPv~p~~~ip~~~~~~np~v~l~~T~~GGHlgfleg~~p~~~~w~~~~l~ef~~~~~ 389 (409)
T KOG1838|consen 327 CINAADDPVVPEEAIPIDDIKSNPNVLLVITSHGGHLGFLEGLWPSARTWMDKLLVEFLGNAI 389 (409)
T ss_pred EEecCCCCCCCcccCCHHHHhcCCcEEEEEeCCCceeeeeccCCCccchhHHHHHHHHHHHHH
Confidence 9999999999984 44556667788888888889999 4433 2345555 888887654
No 64
>PF00326 Peptidase_S9: Prolyl oligopeptidase family This family belongs to family S9 of the peptidase classification.; InterPro: IPR001375 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain covers the active site serine of the serine peptidases belonging to MEROPS peptidase family S9 (prolyl oligopeptidase family, clan SC). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Examples of protein families containing this domain are: Prolyl endopeptidase (3.4.21.26 from EC) (PE) (also called post-proline cleaving enzyme). PE is an enzyme that cleaves peptide bonds on the C-terminal side of prolyl residues. The sequence of PE has been obtained from a mammalian species (pig) and from bacteria (Flavobacterium meningosepticum and Aeromonas hydrophila); there is a high degree of sequence conservation between these sequences. Escherichia coli protease II (3.4.21.83 from EC) (oligopeptidase B) (gene prtB) which cleaves peptide bonds on the C-terminal side of lysyl and argininyl residues. Dipeptidyl peptidase IV (3.4.14.5 from EC) (DPP IV). DPP IV is an enzyme that removes N-terminal dipeptides sequentially from polypeptides having unsubstituted N-termini provided that the penultimate residue is proline. Saccharomyces cerevisiae (Baker's yeast) vacuolar dipeptidyl aminopeptidases A and B (DPAP A and DPAP B), encoded by the STE13 and DAP2 genes respectively. DPAP A is responsible for the proteolytic maturation of the alpha-factor precursor. Acylamino-acid-releasing enzyme (3.4.19.1 from EC) (acyl-peptide hydrolase). This enzyme catalyses the hydrolysis of the amino-terminal peptide bond of an N-acetylated protein to generate a N-acetylated amino acid and a protein with a free amino-terminus. These proteins belong to MEROPS peptidase families S9A, S9B and S9C.; GO: 0008236 serine-type peptidase activity, 0006508 proteolysis; PDB: 2AJ8_D 1ORV_D 2AJB_C 2BUC_D 1ORW_D 2AJC_D 2AJD_C 2BUA_A 2HU8_B 3O4J_B ....
Probab=99.90 E-value=1.7e-22 Score=151.65 Aligned_cols=195 Identities=21% Similarity=0.269 Sum_probs=128.9
Q ss_pred hHHHHHHHHHcCccEEEEccccCCCCCCCcc---ccch-HHHHHHHHHHHHHHHhc---CCceEEEEEeChhHHHHHHHH
Q 022960 63 MVNLAAALEREGISAFRFDFSGNGESEGSFL---YGNY-RREAEDLRAIVQDFCAK---GRVITAIIGHSKGGNAVLLYA 135 (289)
Q Consensus 63 ~~~~~~~l~~~G~~v~~~d~~G~G~s~~~~~---~~~~-~~~~~d~~~~i~~l~~~---~~~~~~l~G~S~Gg~~a~~~a 135 (289)
|......|+++||.|+.+|+||.+....... ...+ ...++|+.++++++.++ +.+++.++|+|+||++++.++
T Consensus 3 f~~~~~~la~~Gy~v~~~~~rGs~g~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~iD~~ri~i~G~S~GG~~a~~~~ 82 (213)
T PF00326_consen 3 FNWNAQLLASQGYAVLVPNYRGSGGYGKDFHEAGRGDWGQADVDDVVAAIEYLIKQYYIDPDRIGIMGHSYGGYLALLAA 82 (213)
T ss_dssp -SHHHHHHHTTT-EEEEEE-TTSSSSHHHHHHTTTTGTTHHHHHHHHHHHHHHHHTTSEEEEEEEEEEETHHHHHHHHHH
T ss_pred eeHHHHHHHhCCEEEEEEcCCCCCccchhHHHhhhccccccchhhHHHHHHHHhccccccceeEEEEcccccccccchhh
Confidence 4567788999999999999999875432211 1111 34578999999999777 567999999999999999999
Q ss_pred HhCCC-ccEEEEeccCCcccccccccccchhHh-hhhhcCcccccccccccccccChhhhhhhhccchhhhhcccccCce
Q 022960 136 SKYND-ISIVINISGRFNLKRGIEGRLGLGYLQ-RIKQNGFIDVRNKKGKLEYRVTQESLMDRLSTDIHAACHMICQDCR 213 (289)
Q Consensus 136 ~~~p~-v~~~v~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P 213 (289)
..+|+ ++++|..+|..+.......... +.. .....+.. ......+....... ......+++|
T Consensus 83 ~~~~~~f~a~v~~~g~~d~~~~~~~~~~--~~~~~~~~~~~~-----------~~~~~~~~~~s~~~---~~~~~~~~~P 146 (213)
T PF00326_consen 83 TQHPDRFKAAVAGAGVSDLFSYYGTTDI--YTKAEYLEYGDP-----------WDNPEFYRELSPIS---PADNVQIKPP 146 (213)
T ss_dssp HHTCCGSSEEEEESE-SSTTCSBHHTCC--HHHGHHHHHSST-----------TTSHHHHHHHHHGG---GGGGCGGGSE
T ss_pred cccceeeeeeeccceecchhcccccccc--cccccccccCcc-----------chhhhhhhhhcccc---ccccccCCCC
Confidence 98999 9999999998776544322111 111 01000000 00111111111111 1111014899
Q ss_pred EEEEEeCCCCccChhhHHHHHhhCC----CcEEEEEcCCCcccc--cCchHHHHHHHHHHHhhcCC
Q 022960 214 VLTIHGTKDKMVPAEDALEFDKFIP----NHKLHIIEGADHEFT--SHQDELASLVIQFIKANYQK 273 (289)
Q Consensus 214 ~l~i~g~~D~~~~~~~~~~~~~~~~----~~~~~~~~~~gH~~~--~~~~~~~~~i~~fl~~~~~~ 273 (289)
+|++||++|..||++.+..+.+.+. +++++++|++||.+. ....++.+.+.+||++++++
T Consensus 147 ~li~hG~~D~~Vp~~~s~~~~~~L~~~g~~~~~~~~p~~gH~~~~~~~~~~~~~~~~~f~~~~l~~ 212 (213)
T PF00326_consen 147 VLIIHGENDPRVPPSQSLRLYNALRKAGKPVELLIFPGEGHGFGNPENRRDWYERILDFFDKYLKK 212 (213)
T ss_dssp EEEEEETTBSSSTTHHHHHHHHHHHHTTSSEEEEEETT-SSSTTSHHHHHHHHHHHHHHHHHHTT-
T ss_pred EEEEccCCCCccCHHHHHHHHHHHHhcCCCEEEEEcCcCCCCCCCchhHHHHHHHHHHHHHHHcCC
Confidence 9999999999999999888877663 489999999999754 33357899999999998864
No 65
>TIGR01836 PHA_synth_III_C poly(R)-hydroxyalkanoic acid synthase, class III, PhaC subunit. This model represents the PhaC subunit of a heterodimeric form of polyhydroxyalkanoic acid (PHA) synthase. Excepting the PhaC of Bacillus megaterium (which needs PhaR), all members require PhaE (TIGR01834) for activity and are designated class III. This enzyme builds ester polymers for carbon and energy storage that accumulate in inclusions, and both this enzyme and the depolymerase associate with the inclusions. Class III enzymes polymerize short-chain-length hydroxyalkanoates.
Probab=99.89 E-value=1.5e-21 Score=157.08 Aligned_cols=222 Identities=13% Similarity=0.189 Sum_probs=139.1
Q ss_pred CCcEEEEEcCCCCCCCC---cchHHHHHHHHHcCccEEEEccccCCCCCCCccccchHHHH-HHHHHHHHHHHhc-CCce
Q 022960 44 SKQLVIVCHGFQSTKDR---IPMVNLAAALEREGISAFRFDFSGNGESEGSFLYGNYRREA-EDLRAIVQDFCAK-GRVI 118 (289)
Q Consensus 44 ~~~~iv~~hG~~~~~~~---~~~~~~~~~l~~~G~~v~~~d~~G~G~s~~~~~~~~~~~~~-~d~~~~i~~l~~~-~~~~ 118 (289)
.+++||++||...+.-. ..++.+++.|.++||+|+++|++|+|.+.... ++.+++ +++.++++++.+. +.++
T Consensus 61 ~~~pvl~v~~~~~~~~~~d~~~~~~~~~~L~~~G~~V~~~D~~g~g~s~~~~---~~~d~~~~~~~~~v~~l~~~~~~~~ 137 (350)
T TIGR01836 61 HKTPLLIVYALVNRPYMLDLQEDRSLVRGLLERGQDVYLIDWGYPDRADRYL---TLDDYINGYIDKCVDYICRTSKLDQ 137 (350)
T ss_pred CCCcEEEeccccccceeccCCCCchHHHHHHHCCCeEEEEeCCCCCHHHhcC---CHHHHHHHHHHHHHHHHHHHhCCCc
Confidence 35679999997644311 12468999999999999999999999875433 445555 4578888888766 6678
Q ss_pred EEEEEeChhHHHHHHHHHhCCC-ccEEEEeccCCcccccc--ccccc----------------chhHhh----hhhcC--
Q 022960 119 TAIIGHSKGGNAVLLYASKYND-ISIVINISGRFNLKRGI--EGRLG----------------LGYLQR----IKQNG-- 173 (289)
Q Consensus 119 ~~l~G~S~Gg~~a~~~a~~~p~-v~~~v~~~~~~~~~~~~--~~~~~----------------~~~~~~----~~~~~-- 173 (289)
++++||||||.+++.+++.+|+ |+++|+++++.+..... ..... ..+... +....
T Consensus 138 i~lvGhS~GG~i~~~~~~~~~~~v~~lv~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~f~~l~p~~~~ 217 (350)
T TIGR01836 138 ISLLGICQGGTFSLCYAALYPDKIKNLVTMVTPVDFETPGNMLSNWARHVDIDLAVDTMGNIPGELLNLTFLMLKPFSLG 217 (350)
T ss_pred ccEEEECHHHHHHHHHHHhCchheeeEEEeccccccCCCCchhhhhccccCHHHHHHhcCCCCHHHHHHHHHhcCcchhh
Confidence 9999999999999999999998 99999999887653211 00000 000000 00000
Q ss_pred ---cccc----ccccc-----------ccccccChhhhhhhhc----cchhh---------hhcccccCceEEEEEeCCC
Q 022960 174 ---FIDV----RNKKG-----------KLEYRVTQESLMDRLS----TDIHA---------ACHMICQDCRVLTIHGTKD 222 (289)
Q Consensus 174 ---~~~~----~~~~~-----------~~~~~~~~~~~~~~~~----~~~~~---------~~~~~~~~~P~l~i~g~~D 222 (289)
+... ..... ..........+.+.+. .+... .....++++|+++++|++|
T Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~w~~d~~~~~~~~~~~~~~~~~~~n~l~~g~~~~~~~~~~l~~i~~Pvliv~G~~D 297 (350)
T TIGR01836 218 YQKYVNLVDILEDERKVENFLRMEKWIFDSPDQAGEAFRQFVKDFYQQNGLINGEVEIGGRKVDLKNIKMPILNIYAERD 297 (350)
T ss_pred hHHHHHHHHhcCChHHHHHHHHHHHHhcCCcCccHHHHHHHHHHHHhcCcccCCeeEECCEEccHHhCCCCeEEEecCCC
Confidence 0000 00000 0000000001111000 00000 0011246899999999999
Q ss_pred CccChhhHHHHHhhCCC--cEEEEEcCCCcc-cccC---chHHHHHHHHHHHh
Q 022960 223 KMVPAEDALEFDKFIPN--HKLHIIEGADHE-FTSH---QDELASLVIQFIKA 269 (289)
Q Consensus 223 ~~~~~~~~~~~~~~~~~--~~~~~~~~~gH~-~~~~---~~~~~~~i~~fl~~ 269 (289)
.++|++.++.+.+.+++ .+++.++ +||. ++.+ ++++.+.|.+||.+
T Consensus 298 ~i~~~~~~~~~~~~~~~~~~~~~~~~-~gH~~~~~~~~~~~~v~~~i~~wl~~ 349 (350)
T TIGR01836 298 HLVPPDASKALNDLVSSEDYTELSFP-GGHIGIYVSGKAQKEVPPAIGKWLQA 349 (350)
T ss_pred CcCCHHHHHHHHHHcCCCCeEEEEcC-CCCEEEEECchhHhhhhHHHHHHHHh
Confidence 99999999999998864 5677777 5887 3433 36899999999975
No 66
>PRK11460 putative hydrolase; Provisional
Probab=99.89 E-value=3e-21 Score=145.76 Aligned_cols=174 Identities=18% Similarity=0.228 Sum_probs=121.8
Q ss_pred CCcEEEEEcCCCCCCCCcchHHHHHHHHHcCccEEEEccccCCCCCCC-----------cccc---chHHHHHHHHHHHH
Q 022960 44 SKQLVIVCHGFQSTKDRIPMVNLAAALEREGISAFRFDFSGNGESEGS-----------FLYG---NYRREAEDLRAIVQ 109 (289)
Q Consensus 44 ~~~~iv~~hG~~~~~~~~~~~~~~~~l~~~G~~v~~~d~~G~G~s~~~-----------~~~~---~~~~~~~d~~~~i~ 109 (289)
.+++||++||+|++... |..+.+.|.+.++.+..++.+|....... .... ......+.+.++++
T Consensus 15 ~~~~vIlLHG~G~~~~~--~~~l~~~l~~~~~~~~~i~~~g~~~~~~~~g~~W~~~~~~~~~~~~~~~~~~~~~l~~~i~ 92 (232)
T PRK11460 15 AQQLLLLFHGVGDNPVA--MGEIGSWFAPAFPDALVVSVGGPEPSGNGAGRQWFSVQGITEDNRQARVAAIMPTFIETVR 92 (232)
T ss_pred CCcEEEEEeCCCCChHH--HHHHHHHHHHHCCCCEEECCCCCCCcCCCCCcccccCCCCCccchHHHHHHHHHHHHHHHH
Confidence 57899999999999975 88999999887766667667765322110 0001 11222344445555
Q ss_pred HHHhc---CCceEEEEEeChhHHHHHHHHHhCCC-ccEEEEeccCCcccccccccccchhHhhhhhcCcccccccccccc
Q 022960 110 DFCAK---GRVITAIIGHSKGGNAVLLYASKYND-ISIVINISGRFNLKRGIEGRLGLGYLQRIKQNGFIDVRNKKGKLE 185 (289)
Q Consensus 110 ~l~~~---~~~~~~l~G~S~Gg~~a~~~a~~~p~-v~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (289)
++..+ +.++++++|+|+||.+++.++..+|+ +.+++.+++.+.... .
T Consensus 93 ~~~~~~~~~~~~i~l~GfS~Gg~~al~~a~~~~~~~~~vv~~sg~~~~~~---------------~-------------- 143 (232)
T PRK11460 93 YWQQQSGVGASATALIGFSQGAIMALEAVKAEPGLAGRVIAFSGRYASLP---------------E-------------- 143 (232)
T ss_pred HHHHhcCCChhhEEEEEECHHHHHHHHHHHhCCCcceEEEEecccccccc---------------c--------------
Confidence 55444 34589999999999999999999988 677777765321000 0
Q ss_pred cccChhhhhhhhccchhhhhcccccCceEEEEEeCCCCccChhhHHHHHhhCC----CcEEEEEcCCCcccccCchHHHH
Q 022960 186 YRVTQESLMDRLSTDIHAACHMICQDCRVLTIHGTKDKMVPAEDALEFDKFIP----NHKLHIIEGADHEFTSHQDELAS 261 (289)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~i~g~~D~~~~~~~~~~~~~~~~----~~~~~~~~~~gH~~~~~~~~~~~ 261 (289)
. ....+|++++||++|+++|.+.++++.+.+. +++++.++++||.+ ..+..+
T Consensus 144 -------------------~--~~~~~pvli~hG~~D~vvp~~~~~~~~~~L~~~g~~~~~~~~~~~gH~i---~~~~~~ 199 (232)
T PRK11460 144 -------------------T--APTATTIHLIHGGEDPVIDVAHAVAAQEALISLGGDVTLDIVEDLGHAI---DPRLMQ 199 (232)
T ss_pred -------------------c--ccCCCcEEEEecCCCCccCHHHHHHHHHHHHHCCCCeEEEEECCCCCCC---CHHHHH
Confidence 0 0116799999999999999999888877664 46888999999997 356667
Q ss_pred HHHHHHHhhcC
Q 022960 262 LVIQFIKANYQ 272 (289)
Q Consensus 262 ~i~~fl~~~~~ 272 (289)
.+.+||.+.+.
T Consensus 200 ~~~~~l~~~l~ 210 (232)
T PRK11460 200 FALDRLRYTVP 210 (232)
T ss_pred HHHHHHHHHcc
Confidence 77777776653
No 67
>PRK06765 homoserine O-acetyltransferase; Provisional
Probab=99.88 E-value=1.9e-21 Score=156.43 Aligned_cols=232 Identities=13% Similarity=0.134 Sum_probs=144.8
Q ss_pred ceEEEEEeec---CCCcEEEEEcCCCCCCCC-----------cchHHHHH---HHHHcCccEEEEccccCCCCCC-----
Q 022960 33 EKLVGILHET---GSKQLVIVCHGFQSTKDR-----------IPMVNLAA---ALEREGISAFRFDFSGNGESEG----- 90 (289)
Q Consensus 33 ~~l~~~~~~~---~~~~~iv~~hG~~~~~~~-----------~~~~~~~~---~l~~~G~~v~~~d~~G~G~s~~----- 90 (289)
.++.|..++. .+.++||++|+++++... .+|..++- .|...-|.||++|..|-|.|..
T Consensus 41 ~~~~Y~t~G~ln~~~~n~vlv~h~~tg~~h~~~~~~~~~~~~gww~~~iG~g~~lDt~~yfvi~~n~lG~~~~~~p~~g~ 120 (389)
T PRK06765 41 VQMGYETYGTLNRAKSNVILITHYFSATSHAAGKYTADDEESGYWDGLIGPGKAIDTNKYFVISTDTLCNVQVKDPNVIT 120 (389)
T ss_pred ceEEEEeccccCCCCCCEEEEeCCCCCchhhcccccccCCCcccHHhccCCCCCcCCCceEEEEecccCCCcCCCCCCCC
Confidence 4566666654 246899999999986421 12544432 2333359999999998764211
Q ss_pred ----------------CccccchHHHHHHHHHHHHHHHhcCCceEE-EEEeChhHHHHHHHHHhCCC-ccEEEEeccCCc
Q 022960 91 ----------------SFLYGNYRREAEDLRAIVQDFCAKGRVITA-IIGHSKGGNAVLLYASKYND-ISIVINISGRFN 152 (289)
Q Consensus 91 ----------------~~~~~~~~~~~~d~~~~i~~l~~~~~~~~~-l~G~S~Gg~~a~~~a~~~p~-v~~~v~~~~~~~ 152 (289)
.+...++.++++++.++++.+ +++++. ++||||||++++.+|.++|+ |+++|++++...
T Consensus 121 tgp~s~~p~tg~~~~~~fP~~t~~d~~~~~~~ll~~l---gi~~~~~vvG~SmGG~ial~~a~~~P~~v~~lv~ia~~~~ 197 (389)
T PRK06765 121 TGPASINPKTGKPYGMDFPVVTILDFVRVQKELIKSL---GIARLHAVMGPSMGGMQAQEWAVHYPHMVERMIGVIGNPQ 197 (389)
T ss_pred CCCCCCCcCCCCccCCCCCcCcHHHHHHHHHHHHHHc---CCCCceEEEEECHHHHHHHHHHHHChHhhheEEEEecCCC
Confidence 122356788888888888877 888886 99999999999999999999 999999987543
Q ss_pred ccccccccccchhHhhh-------------------------------------hhcCcccccccccc----cccccChh
Q 022960 153 LKRGIEGRLGLGYLQRI-------------------------------------KQNGFIDVRNKKGK----LEYRVTQE 191 (289)
Q Consensus 153 ~~~~~~~~~~~~~~~~~-------------------------------------~~~~~~~~~~~~~~----~~~~~~~~ 191 (289)
................+ ....+......... .......+
T Consensus 198 ~~~~~~~~~~~~~~~ai~~dp~~~~G~y~~~~~p~~Gl~~a~~~~~~~~~s~~~~~~~f~r~~~~~~~~~~~~~~~~~~e 277 (389)
T PRK06765 198 NDAWTSVNVLQNWAEAIRLDPNWKGGKYYGEEQPMKGLTLALRMMTMNAFDEHFYETTFPRNASIEVDPYEKVSTLTSFE 277 (389)
T ss_pred CChhHHHHHHHHHHHHHHhCCCCCCCCCCCCCCchHHHHHHHHHHHHHcCCHHHHHHHcCcCccccccccccccchhhHH
Confidence 32111000000000000 00000000000000 00000111
Q ss_pred hhhhhh--------c-------------c-------chhhhhcccccCceEEEEEeCCCCccChhhHHHHHhhCC----C
Q 022960 192 SLMDRL--------S-------------T-------DIHAACHMICQDCRVLTIHGTKDKMVPAEDALEFDKFIP----N 239 (289)
Q Consensus 192 ~~~~~~--------~-------------~-------~~~~~~~~~~~~~P~l~i~g~~D~~~~~~~~~~~~~~~~----~ 239 (289)
.+.... . . +.... ..++++|+|+|+|++|.++|++.++.+.+.++ +
T Consensus 278 ~yl~~~~~~~~~~~Dan~~l~l~~a~~~~d~g~~~~dl~~~--L~~I~~PtLvI~G~~D~l~p~~~~~~la~~lp~~~~~ 355 (389)
T PRK06765 278 KEINKATYRRAELVDANHWLYLAKAVQLFDAGHGFSSLEEA--LSNIEANVLMIPCKQDLLQPPRYNYKMVDILQKQGKY 355 (389)
T ss_pred HHHHHHHHHhhhccChhhHHHHHHHHHhcCCccccCCHHHH--HhcCCCCEEEEEeCCCCCCCHHHHHHHHHHhhhcCCC
Confidence 111100 0 0 11111 12468999999999999999999999999886 6
Q ss_pred cEEEEEcC-CCcccc-cCchHHHHHHHHHHHh
Q 022960 240 HKLHIIEG-ADHEFT-SHQDELASLVIQFIKA 269 (289)
Q Consensus 240 ~~~~~~~~-~gH~~~-~~~~~~~~~i~~fl~~ 269 (289)
++++++++ +||..+ ++++++.+.|.+||++
T Consensus 356 a~l~~I~s~~GH~~~le~p~~~~~~I~~FL~~ 387 (389)
T PRK06765 356 AEVYEIESINGHMAGVFDIHLFEKKIYEFLNR 387 (389)
T ss_pred eEEEEECCCCCcchhhcCHHHHHHHHHHHHcc
Confidence 89999986 899955 7788999999999965
No 68
>KOG2564 consensus Predicted acetyltransferases and hydrolases with the alpha/beta hydrolase fold [General function prediction only]
Probab=99.88 E-value=3.4e-21 Score=140.86 Aligned_cols=241 Identities=14% Similarity=0.149 Sum_probs=146.6
Q ss_pred eeEEeeCCCCceEEEEEeec--CCCcEEEEEcCCCCCCCCcchHHHHHHHHHc-CccEEEEccccCCCCCCCc-cccchH
Q 022960 23 RRVVIPNSHGEKLVGILHET--GSKQLVIVCHGFQSTKDRIPMVNLAAALERE-GISAFRFDFSGNGESEGSF-LYGNYR 98 (289)
Q Consensus 23 ~~~~~~~~~g~~l~~~~~~~--~~~~~iv~~hG~~~~~~~~~~~~~~~~l~~~-G~~v~~~d~~G~G~s~~~~-~~~~~~ 98 (289)
+++.++..++ ++..|+..+ ..+|.++++||+|.+.-+ |..++..|... ..+|+++|+||||++.-.. ...+.+
T Consensus 51 edv~i~~~~~-t~n~Y~t~~~~t~gpil~l~HG~G~S~LS--fA~~a~el~s~~~~r~~a~DlRgHGeTk~~~e~dlS~e 127 (343)
T KOG2564|consen 51 EDVSIDGSDL-TFNVYLTLPSATEGPILLLLHGGGSSALS--FAIFASELKSKIRCRCLALDLRGHGETKVENEDDLSLE 127 (343)
T ss_pred cccccCCCcc-eEEEEEecCCCCCccEEEEeecCcccchh--HHHHHHHHHhhcceeEEEeeccccCccccCChhhcCHH
Confidence 4455554443 455554443 478999999999999976 89999998875 5678889999999997544 456788
Q ss_pred HHHHHHHHHHHHHHhcCCceEEEEEeChhHHHHHHHHHhC--CCccEEEEeccCCccc----cccc----------cccc
Q 022960 99 REAEDLRAIVQDFCAKGRVITAIIGHSKGGNAVLLYASKY--NDISIVINISGRFNLK----RGIE----------GRLG 162 (289)
Q Consensus 99 ~~~~d~~~~i~~l~~~~~~~~~l~G~S~Gg~~a~~~a~~~--p~v~~~v~~~~~~~~~----~~~~----------~~~~ 162 (289)
.++.|+.++++++-.....+++||||||||.+|...|... |.+.+++.++-.-... ..+. +.+.
T Consensus 128 T~~KD~~~~i~~~fge~~~~iilVGHSmGGaIav~~a~~k~lpsl~Gl~viDVVEgtAmeAL~~m~~fL~~rP~~F~Si~ 207 (343)
T KOG2564|consen 128 TMSKDFGAVIKELFGELPPQIILVGHSMGGAIAVHTAASKTLPSLAGLVVIDVVEGTAMEALNSMQHFLRNRPKSFKSIE 207 (343)
T ss_pred HHHHHHHHHHHHHhccCCCceEEEeccccchhhhhhhhhhhchhhhceEEEEEechHHHHHHHHHHHHHhcCCccccchh
Confidence 9999999999999877777899999999999998887764 5688888876321100 0000 0000
Q ss_pred chhHhhhhhcCccc-------c-----ccccc-ccccccChhhhhhhh---ccchhhhhcccccCceEEEEEeCCCCccC
Q 022960 163 LGYLQRIKQNGFID-------V-----RNKKG-KLEYRVTQESLMDRL---STDIHAACHMICQDCRVLTIHGTKDKMVP 226 (289)
Q Consensus 163 ~~~~~~~~~~~~~~-------~-----~~~~~-~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~P~l~i~g~~D~~~~ 226 (289)
......+....... + ....+ .+.|+........++ ......... ...+|-++|.+..|.+-
T Consensus 208 ~Ai~W~v~sg~~Rn~~SArVsmP~~~~~~~eGh~yvwrtdL~kte~YW~gWF~gLS~~Fl--~~p~~klLilAg~d~LD- 284 (343)
T KOG2564|consen 208 DAIEWHVRSGQLRNRDSARVSMPSQLKQCEEGHCYVWRTDLEKTEQYWKGWFKGLSDKFL--GLPVPKLLILAGVDRLD- 284 (343)
T ss_pred hHHHHHhccccccccccceEecchheeeccCCCcEEEEeeccccchhHHHHHhhhhhHhh--CCCccceeEEecccccC-
Confidence 00000000000000 0 00111 233333322222222 121112111 33677777777776532
Q ss_pred hhhHHHHHhhCCCcEEEEEcCCCcccccC-chHHHHHHHHHHHhhc
Q 022960 227 AEDALEFDKFIPNHKLHIIEGADHEFTSH-QDELASLVIQFIKANY 271 (289)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~gH~~~~~-~~~~~~~i~~fl~~~~ 271 (289)
.+. .+-+.-...++.+++.+||+.+++ |.+++..+..|..++.
T Consensus 285 kdL--tiGQMQGk~Q~~vL~~~GH~v~ED~P~kva~~~~~f~~Rn~ 328 (343)
T KOG2564|consen 285 KDL--TIGQMQGKFQLQVLPLCGHFVHEDSPHKVAECLCVFWIRNR 328 (343)
T ss_pred cce--eeeeeccceeeeeecccCceeccCCcchHHHHHHHHHhhhc
Confidence 111 011111246899999999999965 5789999999987653
No 69
>PF05448 AXE1: Acetyl xylan esterase (AXE1); InterPro: IPR008391 This family consists of several bacterial acetyl xylan esterase proteins. Acetyl xylan esterases are enzymes that hydrolyse the ester linkages of the acetyl groups in position 2 and/or 3 of the xylose moieties of natural acetylated xylan from hardwood. These enzymes are one of the accessory enzymes which are part of the xylanolytic system, together with xylanases, beta-xylosidases, alpha-arabinofuranosidases and methylglucuronidases; these are all required for the complete hydrolysis of xylan [].; PDB: 1VLQ_H 3M81_E 3M82_D 3M83_C 3FCY_A 1ODS_F 1ODT_C 1L7A_A 3FYT_A 2XLB_F ....
Probab=99.88 E-value=1.7e-20 Score=146.79 Aligned_cols=236 Identities=18% Similarity=0.193 Sum_probs=146.3
Q ss_pred CCcccceeeEEeeCCCCceEEEEEeecC----CCcEEEEEcCCCCCCCCcchHHHHHHHHHcCccEEEEccccCCCCCCC
Q 022960 16 QDPVVQRRRVVIPNSHGEKLVGILHETG----SKQLVIVCHGFQSTKDRIPMVNLAAALEREGISAFRFDFSGNGESEGS 91 (289)
Q Consensus 16 ~~~~~~~~~~~~~~~~g~~l~~~~~~~~----~~~~iv~~hG~~~~~~~~~~~~~~~~l~~~G~~v~~~d~~G~G~s~~~ 91 (289)
..+.+...+++|.+.+|..+++++..|. +.|+||.+||.++.... +.... .++..||.|+.+|.||+|.....
T Consensus 50 ~~~~~~vy~v~f~s~~g~~V~g~l~~P~~~~~~~Pavv~~hGyg~~~~~--~~~~~-~~a~~G~~vl~~d~rGqg~~~~d 126 (320)
T PF05448_consen 50 PTPGVEVYDVSFESFDGSRVYGWLYRPKNAKGKLPAVVQFHGYGGRSGD--PFDLL-PWAAAGYAVLAMDVRGQGGRSPD 126 (320)
T ss_dssp SBSSEEEEEEEEEEGGGEEEEEEEEEES-SSSSEEEEEEE--TT--GGG--HHHHH-HHHHTT-EEEEE--TTTSSSS-B
T ss_pred CCCCEEEEEEEEEccCCCEEEEEEEecCCCCCCcCEEEEecCCCCCCCC--ccccc-ccccCCeEEEEecCCCCCCCCCC
Confidence 3456778899999999999999988664 56899999999998643 44433 46788999999999999932210
Q ss_pred --------------------ccccchHHHHHHHHHHHHHHHhc---CCceEEEEEeChhHHHHHHHHHhCCCccEEEEec
Q 022960 92 --------------------FLYGNYRREAEDLRAIVQDFCAK---GRVITAIIGHSKGGNAVLLYASKYNDISIVINIS 148 (289)
Q Consensus 92 --------------------~~~~~~~~~~~d~~~~i~~l~~~---~~~~~~l~G~S~Gg~~a~~~a~~~p~v~~~v~~~ 148 (289)
....-+.....|...+++.+... +.++|.+.|.|+||.+++.+|+..++|++++...
T Consensus 127 ~~~~~~~~~~g~~~~g~~~~~e~~yyr~~~~D~~ravd~l~slpevD~~rI~v~G~SqGG~lal~~aaLd~rv~~~~~~v 206 (320)
T PF05448_consen 127 YRGSSGGTLKGHITRGIDDNPEDYYYRRVYLDAVRAVDFLRSLPEVDGKRIGVTGGSQGGGLALAAAALDPRVKAAAADV 206 (320)
T ss_dssp -SSBSSS-SSSSTTTTTTS-TTT-HHHHHHHHHHHHHHHHHTSTTEEEEEEEEEEETHHHHHHHHHHHHSST-SEEEEES
T ss_pred ccccCCCCCccHHhcCccCchHHHHHHHHHHHHHHHHHHHHhCCCcCcceEEEEeecCchHHHHHHHHhCccccEEEecC
Confidence 11122345568999999999877 4579999999999999999999999999999988
Q ss_pred cCCccccccccccc-----chhHhhhhhcCcccccccccccccccChhhhhhhhc-cchhhhhcccccCceEEEEEeCCC
Q 022960 149 GRFNLKRGIEGRLG-----LGYLQRIKQNGFIDVRNKKGKLEYRVTQESLMDRLS-TDIHAACHMICQDCRVLTIHGTKD 222 (289)
Q Consensus 149 ~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~P~l~i~g~~D 222 (289)
|.+.-......... ..+...+... . ......+.+.+.+. .|...... +|++|+++-.|-.|
T Consensus 207 P~l~d~~~~~~~~~~~~~y~~~~~~~~~~------d-----~~~~~~~~v~~~L~Y~D~~nfA~--ri~~pvl~~~gl~D 273 (320)
T PF05448_consen 207 PFLCDFRRALELRADEGPYPEIRRYFRWR------D-----PHHEREPEVFETLSYFDAVNFAR--RIKCPVLFSVGLQD 273 (320)
T ss_dssp ESSSSHHHHHHHT--STTTHHHHHHHHHH------S-----CTHCHHHHHHHHHHTT-HHHHGG--G--SEEEEEEETT-
T ss_pred CCccchhhhhhcCCccccHHHHHHHHhcc------C-----CCcccHHHHHHHHhhhhHHHHHH--HcCCCEEEEEecCC
Confidence 86543222111100 0011111000 0 00001111111111 11122222 46999999999999
Q ss_pred CccChhhHHHHHhhCC-CcEEEEEcCCCcccccCchHH-HHHHHHHHHhh
Q 022960 223 KMVPAEDALEFDKFIP-NHKLHIIEGADHEFTSHQDEL-ASLVIQFIKAN 270 (289)
Q Consensus 223 ~~~~~~~~~~~~~~~~-~~~~~~~~~~gH~~~~~~~~~-~~~i~~fl~~~ 270 (289)
+++|+......++.++ .+++.+++..||.. ..+. .+...+||.++
T Consensus 274 ~~cPP~t~fA~yN~i~~~K~l~vyp~~~He~---~~~~~~~~~~~~l~~~ 320 (320)
T PF05448_consen 274 PVCPPSTQFAAYNAIPGPKELVVYPEYGHEY---GPEFQEDKQLNFLKEH 320 (320)
T ss_dssp SSS-HHHHHHHHCC--SSEEEEEETT--SST---THHHHHHHHHHHHHH-
T ss_pred CCCCchhHHHHHhccCCCeeEEeccCcCCCc---hhhHHHHHHHHHHhcC
Confidence 9999999999999987 48999999999975 3444 67788888763
No 70
>PF00561 Abhydrolase_1: alpha/beta hydrolase fold A web page of Esterases and alpha/beta hydrolases.; InterPro: IPR000073 The alpha/beta hydrolase fold [] is common to a number of hydrolytic enzymes of widely differing phylogenetic origin and catalytic function. The core of each enzyme is an alpha/beta-sheet (rather than a barrel), containing 8 strands connected by helices []. The enzymes are believed to have diverged from a common ancestor, preserving the arrangement of the catalytic residues. All have a catalytic triad, the elements of which are borne on loops, which are the best conserved structural features of the fold. Esterase (EST) from Pseudomonas putida is a member of the alpha/beta hydrolase fold superfamily of enzymes []. In most of the family members the beta-strands are parallels, but some have an inversion of the first strands, which gives it an antiparallel orientation. The catalytic triad residues are presented on loops. One of these is the nucleophile elbow and is the most conserved feature of the fold. Some other members lack one or all of the catalytic residues. Some members are therefore inactive but others are involved in surface recognition. The ESTHER database [] gathers and annotates all the published information related to gene and protein sequences of this superfamily []. This entry represents fold-1 of alpha/beta hydrolase.; PDB: 2VAT_E 2VAX_C 2VAV_H 2PSJ_A 2PSH_B 2PSE_A 2PSF_A 2PSD_A 2EDA_A 1CIJ_A ....
Probab=99.87 E-value=6.6e-22 Score=150.52 Aligned_cols=187 Identities=25% Similarity=0.311 Sum_probs=118.5
Q ss_pred ccEEEEccccCCCCCC----CccccchHHHHHHHHHHHHHHHhcCCceEEEEEeChhHHHHHHHHHhCCC-ccEEEEecc
Q 022960 75 ISAFRFDFSGNGESEG----SFLYGNYRREAEDLRAIVQDFCAKGRVITAIIGHSKGGNAVLLYASKYND-ISIVINISG 149 (289)
Q Consensus 75 ~~v~~~d~~G~G~s~~----~~~~~~~~~~~~d~~~~i~~l~~~~~~~~~l~G~S~Gg~~a~~~a~~~p~-v~~~v~~~~ 149 (289)
|+|+++|+||+|.|+. .....+..+.++++..+++.+ +.++++++||||||.+++.++..+|+ |+++|++++
T Consensus 1 f~vi~~d~rG~g~S~~~~~~~~~~~~~~~~~~~~~~~~~~l---~~~~~~~vG~S~Gg~~~~~~a~~~p~~v~~lvl~~~ 77 (230)
T PF00561_consen 1 FDVILFDLRGFGYSSPHWDPDFPDYTTDDLAADLEALREAL---GIKKINLVGHSMGGMLALEYAAQYPERVKKLVLISP 77 (230)
T ss_dssp EEEEEEECTTSTTSSSCCGSGSCTHCHHHHHHHHHHHHHHH---TTSSEEEEEETHHHHHHHHHHHHSGGGEEEEEEESE
T ss_pred CEEEEEeCCCCCCCCCCccCCcccccHHHHHHHHHHHHHHh---CCCCeEEEEECCChHHHHHHHHHCchhhcCcEEEee
Confidence 6899999999999995 234556677788888888877 77789999999999999999999999 999999998
Q ss_pred CC----ccccccccc--ccchhHhhhhh---cCc----cccc---------------cccc-ccccc-cChhhhhhhhc-
Q 022960 150 RF----NLKRGIEGR--LGLGYLQRIKQ---NGF----IDVR---------------NKKG-KLEYR-VTQESLMDRLS- 198 (289)
Q Consensus 150 ~~----~~~~~~~~~--~~~~~~~~~~~---~~~----~~~~---------------~~~~-~~~~~-~~~~~~~~~~~- 198 (289)
+. ......... ........... ... .... .... ..... ...........
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (230)
T PF00561_consen 78 PPDLPDGLWNRIWPRGNLQGQLLDNFFNFLSDPIKPLLGRWPKQFFAYDREFVEDFLKQFQSQQYARFAETDAFDNMFWN 157 (230)
T ss_dssp SSHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred eccchhhhhHHHHhhhhhhhhHHHhhhccccccchhhhhhhhhheeeccCccccchhhccchhhhhHHHHHHHHhhhccc
Confidence 62 111000000 00000000000 000 0000 0000 00000 00000000000
Q ss_pred -----cchhhhhcccccCceEEEEEeCCCCccChhhHHHHHhhCCCcEEEEEcCCCcccc-cCchHHHHHHH
Q 022960 199 -----TDIHAACHMICQDCRVLTIHGTKDKMVPAEDALEFDKFIPNHKLHIIEGADHEFT-SHQDELASLVI 264 (289)
Q Consensus 199 -----~~~~~~~~~~~~~~P~l~i~g~~D~~~~~~~~~~~~~~~~~~~~~~~~~~gH~~~-~~~~~~~~~i~ 264 (289)
..........++++|+++++|++|.++|++....+.+.+|+.+++.++++||..+ ++++++.+.|.
T Consensus 158 ~~~~~~~~~~~~~l~~i~~p~l~i~~~~D~~~p~~~~~~~~~~~~~~~~~~~~~~GH~~~~~~~~~~~~~i~ 229 (230)
T PF00561_consen 158 ALGYFSVWDPSPALSNIKVPTLIIWGEDDPLVPPESSEQLAKLIPNSQLVLIEGSGHFAFLEGPDEFNEIII 229 (230)
T ss_dssp HHHHHHHHHHHHHHTTTTSEEEEEEETTCSSSHHHHHHHHHHHSTTEEEEEETTCCSTHHHHSHHHHHHHHH
T ss_pred cccccccccccccccccCCCeEEEEeCCCCCCCHHHHHHHHHhcCCCEEEECCCCChHHHhcCHHhhhhhhc
Confidence 0000011112479999999999999999999999999999999999999999955 66777777664
No 71
>PF01738 DLH: Dienelactone hydrolase family; InterPro: IPR002925 Dienelactone hydrolases play a crucial role in chlorocatechol degradation via the modified ortho cleavage pathway. Enzymes induced in 4-fluorobenzoate-utilizing bacteria have been classified into three groups on the basis of their specificity towards cis- and trans-dienelactone []. Some proteins contain repeated small fragments of this domain (for example rat kan-1 protein).; GO: 0016787 hydrolase activity; PDB: 1GGV_A 1ZIY_A 1ZI6_A 1ZIC_A 1ZJ5_A 1ZI8_A 1ZJ4_A 1ZI9_A 1ZIX_A 3F67_A.
Probab=99.87 E-value=2.2e-20 Score=140.57 Aligned_cols=179 Identities=20% Similarity=0.292 Sum_probs=120.0
Q ss_pred CCcEEEEEcCCCCCCCCcchHHHHHHHHHcCccEEEEccccCCC-CCCCcc--ccc--------hHHHHHHHHHHHHHHH
Q 022960 44 SKQLVIVCHGFQSTKDRIPMVNLAAALEREGISAFRFDFSGNGE-SEGSFL--YGN--------YRREAEDLRAIVQDFC 112 (289)
Q Consensus 44 ~~~~iv~~hG~~~~~~~~~~~~~~~~l~~~G~~v~~~d~~G~G~-s~~~~~--~~~--------~~~~~~d~~~~i~~l~ 112 (289)
+.|.||++|+..|-.. ..+.+++.|++.||.|+++|+-+-.. ...... ... .+....++.+++++|+
T Consensus 13 ~~~~Vvv~~d~~G~~~--~~~~~ad~lA~~Gy~v~~pD~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~~l~ 90 (218)
T PF01738_consen 13 PRPAVVVIHDIFGLNP--NIRDLADRLAEEGYVVLAPDLFGGRGAPPSDPEEAFAAMRELFAPRPEQVAADLQAAVDYLR 90 (218)
T ss_dssp SEEEEEEE-BTTBS-H--HHHHHHHHHHHTT-EEEEE-CCCCTS--CCCHHCHHHHHHHCHHHSHHHHHHHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCch--HHHHHHHHHHhcCCCEEecccccCCCCCccchhhHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence 4789999999988773 37889999999999999999864333 111110 001 2345678889999998
Q ss_pred hcC---CceEEEEEeChhHHHHHHHHHhCCCccEEEEeccCCcccccccccccchhHhhhhhcCcccccccccccccccC
Q 022960 113 AKG---RVITAIIGHSKGGNAVLLYASKYNDISIVINISGRFNLKRGIEGRLGLGYLQRIKQNGFIDVRNKKGKLEYRVT 189 (289)
Q Consensus 113 ~~~---~~~~~l~G~S~Gg~~a~~~a~~~p~v~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (289)
++. .+++.++|+|+||.+++.++...+.++++|...|.......
T Consensus 91 ~~~~~~~~kig~vGfc~GG~~a~~~a~~~~~~~a~v~~yg~~~~~~~--------------------------------- 137 (218)
T PF01738_consen 91 AQPEVDPGKIGVVGFCWGGKLALLLAARDPRVDAAVSFYGGSPPPPP--------------------------------- 137 (218)
T ss_dssp CTTTCEEEEEEEEEETHHHHHHHHHHCCTTTSSEEEEES-SSSGGGH---------------------------------
T ss_pred hccccCCCcEEEEEEecchHHhhhhhhhccccceEEEEcCCCCCCcc---------------------------------
Confidence 874 56999999999999999999888669999988871110000
Q ss_pred hhhhhhhhccchhhhhcccccCceEEEEEeCCCCccChhhHHHHHhhC----CCcEEEEEcCCCcccccC---------c
Q 022960 190 QESLMDRLSTDIHAACHMICQDCRVLTIHGTKDKMVPAEDALEFDKFI----PNHKLHIIEGADHEFTSH---------Q 256 (289)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~P~l~i~g~~D~~~~~~~~~~~~~~~----~~~~~~~~~~~gH~~~~~---------~ 256 (289)
. ....++++|+++++|++|+.++.+..+.+.+.+ ...++++|+|++|.|... .
T Consensus 138 ------------~--~~~~~~~~P~l~~~g~~D~~~~~~~~~~~~~~l~~~~~~~~~~~y~ga~HgF~~~~~~~~~~~aa 203 (218)
T PF01738_consen 138 ------------L--EDAPKIKAPVLILFGENDPFFPPEEVEALEEALKAAGVDVEVHVYPGAGHGFANPSRPPYDPAAA 203 (218)
T ss_dssp ------------H--HHGGG--S-EEEEEETT-TTS-HHHHHHHHHHHHCTTTTEEEEEETT--TTTTSTTSTT--HHHH
T ss_pred ------------h--hhhcccCCCEeecCccCCCCCChHHHHHHHHHHHhcCCcEEEEECCCCcccccCCCCcccCHHHH
Confidence 0 000134889999999999999998777766555 468999999999998632 1
Q ss_pred hHHHHHHHHHHHhhc
Q 022960 257 DELASLVIQFIKANY 271 (289)
Q Consensus 257 ~~~~~~i~~fl~~~~ 271 (289)
++..+.+.+||++++
T Consensus 204 ~~a~~~~~~ff~~~L 218 (218)
T PF01738_consen 204 EDAWQRTLAFFKRHL 218 (218)
T ss_dssp HHHHHHHHHHHCC--
T ss_pred HHHHHHHHHHHHhcC
Confidence 356778888887654
No 72
>PF06500 DUF1100: Alpha/beta hydrolase of unknown function (DUF1100); InterPro: IPR010520 Proteins in this entry display esterase activity toward pNP-butyrate []. This entry also includes 2,6-dihydropseudooxynicotine hydrolase which has a role in nicotine catabolism by cleaving a C-C bond in 2,6-dihydroxypseudooxyicotine [, ].; PDB: 3OUR_A 3MVE_B 2JBW_C.
Probab=99.86 E-value=2e-20 Score=147.29 Aligned_cols=235 Identities=21% Similarity=0.238 Sum_probs=137.8
Q ss_pred ccceeeEEeeCCCCceEEEEEeecC---CCcEEEEEcCCCCCCCCcchHHHHHHHHHcCccEEEEccccCCCCCCCcccc
Q 022960 19 VVQRRRVVIPNSHGEKLVGILHETG---SKQLVIVCHGFQSTKDRIPMVNLAAALEREGISAFRFDFSGNGESEGSFLYG 95 (289)
Q Consensus 19 ~~~~~~~~~~~~~g~~l~~~~~~~~---~~~~iv~~hG~~~~~~~~~~~~~~~~l~~~G~~v~~~d~~G~G~s~~~~~~~ 95 (289)
+.+.+++.|+.. |.+|.++++-|. +.|+||++.|+.+.... ++..+.+.|+.+|+.++++|.||.|.|.......
T Consensus 162 ~~~i~~v~iP~e-g~~I~g~LhlP~~~~p~P~VIv~gGlDs~qeD-~~~l~~~~l~~rGiA~LtvDmPG~G~s~~~~l~~ 239 (411)
T PF06500_consen 162 DYPIEEVEIPFE-GKTIPGYLHLPSGEKPYPTVIVCGGLDSLQED-LYRLFRDYLAPRGIAMLTVDMPGQGESPKWPLTQ 239 (411)
T ss_dssp SSEEEEEEEEET-TCEEEEEEEESSSSS-EEEEEEE--TTS-GGG-GHHHHHCCCHHCT-EEEEE--TTSGGGTTT-S-S
T ss_pred CCCcEEEEEeeC-CcEEEEEEEcCCCCCCCCEEEEeCCcchhHHH-HHHHHHHHHHhCCCEEEEEccCCCcccccCCCCc
Confidence 445677788765 478888877554 45778888787777764 4566667899999999999999999986544333
Q ss_pred chHHHHHHHHHHHHHHHhc---CCceEEEEEeChhHHHHHHHHHhCCC-ccEEEEeccCCcccc---cccccccchhHhh
Q 022960 96 NYRREAEDLRAIVQDFCAK---GRVITAIIGHSKGGNAVLLYASKYND-ISIVINISGRFNLKR---GIEGRLGLGYLQR 168 (289)
Q Consensus 96 ~~~~~~~d~~~~i~~l~~~---~~~~~~l~G~S~Gg~~a~~~a~~~p~-v~~~v~~~~~~~~~~---~~~~~~~~~~~~~ 168 (289)
+.+.. ..++++++... +..+|.++|.|+||++|.++|...+. ++++|..++.....- .........+...
T Consensus 240 D~~~l---~~aVLd~L~~~p~VD~~RV~~~G~SfGGy~AvRlA~le~~RlkavV~~Ga~vh~~ft~~~~~~~~P~my~d~ 316 (411)
T PF06500_consen 240 DSSRL---HQAVLDYLASRPWVDHTRVGAWGFSFGGYYAVRLAALEDPRLKAVVALGAPVHHFFTDPEWQQRVPDMYLDV 316 (411)
T ss_dssp -CCHH---HHHHHHHHHHSTTEEEEEEEEEEETHHHHHHHHHHHHTTTT-SEEEEES---SCGGH-HHHHTTS-HHHHHH
T ss_pred CHHHH---HHHHHHHHhcCCccChhheEEEEeccchHHHHHHHHhcccceeeEeeeCchHhhhhccHHHHhcCCHHHHHH
Confidence 33333 34566777655 55699999999999999999987755 999999998654221 1111111111111
Q ss_pred hhhcCcccccccccccccccChhhhhhhhccc-h--hhhhcccccCceEEEEEeCCCCccChhhHHHHHhhCCCcEEEEE
Q 022960 169 IKQNGFIDVRNKKGKLEYRVTQESLMDRLSTD-I--HAACHMICQDCRVLTIHGTKDKMVPAEDALEFDKFIPNHKLHII 245 (289)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--~~~~~~~~~~~P~l~i~g~~D~~~~~~~~~~~~~~~~~~~~~~~ 245 (289)
+... .+.. ....+.+...+..- . .......+..+|+|.+.+++|+++|.+..+-++..-.+.+...+
T Consensus 317 LA~r--------lG~~--~~~~~~l~~el~~~SLk~qGlL~~rr~~~plL~i~~~~D~v~P~eD~~lia~~s~~gk~~~~ 386 (411)
T PF06500_consen 317 LASR--------LGMA--AVSDESLRGELNKFSLKTQGLLSGRRCPTPLLAINGEDDPVSPIEDSRLIAESSTDGKALRI 386 (411)
T ss_dssp HHHH--------CT-S--CE-HHHHHHHGGGGSTTTTTTTTSS-BSS-EEEEEETT-SSS-HHHHHHHHHTBTT-EEEEE
T ss_pred HHHH--------hCCc--cCCHHHHHHHHHhcCcchhccccCCCCCcceEEeecCCCCCCCHHHHHHHHhcCCCCceeec
Confidence 1110 0000 01122222221111 1 11111234588999999999999999999999888777888888
Q ss_pred cCCC-cccccCchHHHHHHHHHHHhhc
Q 022960 246 EGAD-HEFTSHQDELASLVIQFIKANY 271 (289)
Q Consensus 246 ~~~g-H~~~~~~~~~~~~i~~fl~~~~ 271 (289)
+... |.- -++.+..+.+||++.+
T Consensus 387 ~~~~~~~g---y~~al~~~~~Wl~~~l 410 (411)
T PF06500_consen 387 PSKPLHMG---YPQALDEIYKWLEDKL 410 (411)
T ss_dssp -SSSHHHH---HHHHHHHHHHHHHHHH
T ss_pred CCCccccc---hHHHHHHHHHHHHHhc
Confidence 8644 432 3578889999998764
No 73
>TIGR01838 PHA_synth_I poly(R)-hydroxyalkanoic acid synthase, class I. This model represents the class I subfamily of poly(R)-hydroxyalkanoate synthases, which polymerizes hydroxyacyl-CoAs with three to five carbons in the hydroxyacyl backbone into aliphatic esters termed poly(R)-hydroxyalkanoic acids. These polymers accumulate as carbon and energy storage inclusions in many species and can amount to 90 percent of the dry weight of cell.
Probab=99.85 E-value=1.3e-19 Score=149.83 Aligned_cols=205 Identities=12% Similarity=0.131 Sum_probs=127.7
Q ss_pred CCcEEEEEcCCCCCCCCcch-----HHHHHHHHHcCccEEEEccccCCCCCCCccccchHHHH-HHHHHHHHHHHhc-CC
Q 022960 44 SKQLVIVCHGFQSTKDRIPM-----VNLAAALEREGISAFRFDFSGNGESEGSFLYGNYRREA-EDLRAIVQDFCAK-GR 116 (289)
Q Consensus 44 ~~~~iv~~hG~~~~~~~~~~-----~~~~~~l~~~G~~v~~~d~~G~G~s~~~~~~~~~~~~~-~d~~~~i~~l~~~-~~ 116 (289)
.+++||++||+.... +.+ ..+++.|.++||+|+++|++|+|.+..... +++++ +++.++++.+.+. +.
T Consensus 187 ~~~PlLiVp~~i~k~--yilDL~p~~Slv~~L~~qGf~V~~iDwrgpg~s~~~~~---~ddY~~~~i~~al~~v~~~~g~ 261 (532)
T TIGR01838 187 HKTPLLIVPPWINKY--YILDLRPQNSLVRWLVEQGHTVFVISWRNPDASQADKT---FDDYIRDGVIAALEVVEAITGE 261 (532)
T ss_pred CCCcEEEECcccccc--eeeecccchHHHHHHHHCCcEEEEEECCCCCcccccCC---hhhhHHHHHHHHHHHHHHhcCC
Confidence 468999999997665 334 379999999999999999999998865432 23333 4566777766554 77
Q ss_pred ceEEEEEeChhHHHHH----HHHHhC-CC-ccEEEEeccCCccccccc--ccccchh---H-hhhhhcCccc--------
Q 022960 117 VITAIIGHSKGGNAVL----LYASKY-ND-ISIVINISGRFNLKRGIE--GRLGLGY---L-QRIKQNGFID-------- 176 (289)
Q Consensus 117 ~~~~l~G~S~Gg~~a~----~~a~~~-p~-v~~~v~~~~~~~~~~~~~--~~~~~~~---~-~~~~~~~~~~-------- 176 (289)
++++++|||+||.++. .+++.. ++ |++++++++..++...-. ....... . ..+...++..
T Consensus 262 ~kv~lvG~cmGGtl~a~ala~~aa~~~~~rv~slvll~t~~Df~~~G~l~~f~~~~~~~~~e~~~~~~G~lpg~~m~~~F 341 (532)
T TIGR01838 262 KQVNCVGYCIGGTLLSTALAYLAARGDDKRIKSATFFTTLLDFSDPGELGVFVDEEIVAGIERQNGGGGYLDGRQMAVTF 341 (532)
T ss_pred CCeEEEEECcCcHHHHHHHHHHHHhCCCCccceEEEEecCcCCCCcchhhhhcCchhHHHHHHHHHhcCCCCHHHHHHHH
Confidence 8999999999999852 245555 66 999999998877543210 0000000 0 0000000000
Q ss_pred -c---------------cccccc--c---cc-----ccChhhhhhh----hccchhh---------hhcccccCceEEEE
Q 022960 177 -V---------------RNKKGK--L---EY-----RVTQESLMDR----LSTDIHA---------ACHMICQDCRVLTI 217 (289)
Q Consensus 177 -~---------------~~~~~~--~---~~-----~~~~~~~~~~----~~~~~~~---------~~~~~~~~~P~l~i 217 (289)
. ...... . .| .+......+. +..+... .....++++|+|++
T Consensus 342 ~~lrp~~l~w~~~v~~yl~g~~~~~fdll~Wn~D~t~lP~~~~~~~lr~ly~~N~L~~G~~~v~g~~~dL~~I~vPvLvV 421 (532)
T TIGR01838 342 SLLRENDLIWNYYVDNYLKGKSPVPFDLLFWNSDSTNLPGKMHNFYLRNLYLQNALTTGGLEVCGVRLDLSKVKVPVYII 421 (532)
T ss_pred HhcChhhHHHHHHHHHHhcCCCccchhHHHHhccCccchHHHHHHHHHHHHhcCCCcCCeeEECCEecchhhCCCCEEEE
Confidence 0 000000 0 00 0000111111 1111100 01112579999999
Q ss_pred EeCCCCccChhhHHHHHhhCCCcEEEEEcCCCcccc
Q 022960 218 HGTKDKMVPAEDALEFDKFIPNHKLHIIEGADHEFT 253 (289)
Q Consensus 218 ~g~~D~~~~~~~~~~~~~~~~~~~~~~~~~~gH~~~ 253 (289)
+|++|.++|++.++.+.+.+++.+..+++++||..+
T Consensus 422 ~G~~D~IvP~~sa~~l~~~i~~~~~~vL~~sGHi~~ 457 (532)
T TIGR01838 422 ATREDHIAPWQSAYRGAALLGGPKTFVLGESGHIAG 457 (532)
T ss_pred eeCCCCcCCHHHHHHHHHHCCCCEEEEECCCCCchH
Confidence 999999999999999999999999999999999854
No 74
>COG0412 Dienelactone hydrolase and related enzymes [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.85 E-value=7.6e-19 Score=132.05 Aligned_cols=199 Identities=20% Similarity=0.252 Sum_probs=150.8
Q ss_pred eeEEeeCCCCceEEEEEeecC---CCcEEEEEcCCCCCCCCcchHHHHHHHHHcCccEEEEccccC-CCCCCCc----c-
Q 022960 23 RRVVIPNSHGEKLVGILHETG---SKQLVIVCHGFQSTKDRIPMVNLAAALEREGISAFRFDFSGN-GESEGSF----L- 93 (289)
Q Consensus 23 ~~~~~~~~~g~~l~~~~~~~~---~~~~iv~~hG~~~~~~~~~~~~~~~~l~~~G~~v~~~d~~G~-G~s~~~~----~- 93 (289)
+.+.++..+ ..+.+++..|. ..|.||++|+..+-... .+.+++.|++.||.|+++|+-+. |.+.... .
T Consensus 3 ~~v~~~~~~-~~~~~~~a~P~~~~~~P~VIv~hei~Gl~~~--i~~~a~rlA~~Gy~v~~Pdl~~~~~~~~~~~~~~~~~ 79 (236)
T COG0412 3 TDVTIPAPD-GELPAYLARPAGAGGFPGVIVLHEIFGLNPH--IRDVARRLAKAGYVVLAPDLYGRQGDPTDIEDEPAEL 79 (236)
T ss_pred cceEeeCCC-ceEeEEEecCCcCCCCCEEEEEecccCCchH--HHHHHHHHHhCCcEEEechhhccCCCCCcccccHHHH
Confidence 456777766 67777766543 34899999999998854 89999999999999999998763 3322111 0
Q ss_pred ------ccchHHHHHHHHHHHHHHHhcC---CceEEEEEeChhHHHHHHHHHhCCCccEEEEeccCCcccccccccccch
Q 022960 94 ------YGNYRREAEDLRAIVQDFCAKG---RVITAIIGHSKGGNAVLLYASKYNDISIVINISGRFNLKRGIEGRLGLG 164 (289)
Q Consensus 94 ------~~~~~~~~~d~~~~i~~l~~~~---~~~~~l~G~S~Gg~~a~~~a~~~p~v~~~v~~~~~~~~~~~~~~~~~~~ 164 (289)
.........|+.+.+++|..+. .++|.++|+||||.+++.++...|++++.+...|.........
T Consensus 80 ~~~~~~~~~~~~~~~d~~a~~~~L~~~~~~~~~~ig~~GfC~GG~~a~~~a~~~~~v~a~v~fyg~~~~~~~~~------ 153 (236)
T COG0412 80 ETGLVERVDPAEVLADIDAALDYLARQPQVDPKRIGVVGFCMGGGLALLAATRAPEVKAAVAFYGGLIADDTAD------ 153 (236)
T ss_pred hhhhhccCCHHHHHHHHHHHHHHHHhCCCCCCceEEEEEEcccHHHHHHhhcccCCccEEEEecCCCCCCcccc------
Confidence 1122566799999999998774 6789999999999999999999889999998877543211100
Q ss_pred hHhhhhhcCcccccccccccccccChhhhhhhhccchhhhhcccccCceEEEEEeCCCCccChhhHHHHHhhCC----Cc
Q 022960 165 YLQRIKQNGFIDVRNKKGKLEYRVTQESLMDRLSTDIHAACHMICQDCRVLTIHGTKDKMVPAEDALEFDKFIP----NH 240 (289)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~i~g~~D~~~~~~~~~~~~~~~~----~~ 240 (289)
..++++|+|+.+|+.|..+|......+.+.+. ..
T Consensus 154 ------------------------------------------~~~~~~pvl~~~~~~D~~~p~~~~~~~~~~~~~~~~~~ 191 (236)
T COG0412 154 ------------------------------------------APKIKVPVLLHLAGEDPYIPAADVDALAAALEDAGVKV 191 (236)
T ss_pred ------------------------------------------cccccCcEEEEecccCCCCChhHHHHHHHHHHhcCCCe
Confidence 11458999999999999999887777766653 47
Q ss_pred EEEEEcCCCcccccC-----c-------hHHHHHHHHHHHhhcC
Q 022960 241 KLHIIEGADHEFTSH-----Q-------DELASLVIQFIKANYQ 272 (289)
Q Consensus 241 ~~~~~~~~gH~~~~~-----~-------~~~~~~i~~fl~~~~~ 272 (289)
++.+++++.|.|+.. . ++.++.+.+||++.+.
T Consensus 192 ~~~~y~ga~H~F~~~~~~~~~~y~~~aa~~a~~~~~~ff~~~~~ 235 (236)
T COG0412 192 DLEIYPGAGHGFANDRADYHPGYDAAAAEDAWQRVLAFFKRLLG 235 (236)
T ss_pred eEEEeCCCccccccCCCcccccCCHHHHHHHHHHHHHHHHHhcc
Confidence 889999999998732 1 3578889999988764
No 75
>PRK07868 acyl-CoA synthetase; Validated
Probab=99.84 E-value=1.7e-19 Score=162.80 Aligned_cols=225 Identities=14% Similarity=0.181 Sum_probs=140.6
Q ss_pred CCcEEEEEcCCCCCCCCcchHH-----HHHHHHHcCccEEEEccccCCCCCCCcc--ccchHHHHHHHHHHHHHHHhcCC
Q 022960 44 SKQLVIVCHGFQSTKDRIPMVN-----LAAALEREGISAFRFDFSGNGESEGSFL--YGNYRREAEDLRAIVQDFCAKGR 116 (289)
Q Consensus 44 ~~~~iv~~hG~~~~~~~~~~~~-----~~~~l~~~G~~v~~~d~~G~G~s~~~~~--~~~~~~~~~d~~~~i~~l~~~~~ 116 (289)
.+++||++||++.+.. .|+. +.+.|.++||+|+++|+ |.++.+.. ..++.+.+..+.++++.++....
T Consensus 66 ~~~plllvhg~~~~~~--~~d~~~~~s~v~~L~~~g~~v~~~d~---G~~~~~~~~~~~~l~~~i~~l~~~l~~v~~~~~ 140 (994)
T PRK07868 66 VGPPVLMVHPMMMSAD--MWDVTRDDGAVGILHRAGLDPWVIDF---GSPDKVEGGMERNLADHVVALSEAIDTVKDVTG 140 (994)
T ss_pred CCCcEEEECCCCCCcc--ceecCCcccHHHHHHHCCCEEEEEcC---CCCChhHcCccCCHHHHHHHHHHHHHHHHHhhC
Confidence 5689999999998884 4665 47899999999999995 55544322 23555556666666666554555
Q ss_pred ceEEEEEeChhHHHHHHHHHhC-CC-ccEEEEeccCCccccccccc-------ccchh-----Hhh------hhhcC---
Q 022960 117 VITAIIGHSKGGNAVLLYASKY-ND-ISIVINISGRFNLKRGIEGR-------LGLGY-----LQR------IKQNG--- 173 (289)
Q Consensus 117 ~~~~l~G~S~Gg~~a~~~a~~~-p~-v~~~v~~~~~~~~~~~~~~~-------~~~~~-----~~~------~~~~~--- 173 (289)
++++++||||||.+++.+++.+ ++ |+++|+++++.++....... ....+ ... +....
T Consensus 141 ~~v~lvG~s~GG~~a~~~aa~~~~~~v~~lvl~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~ 220 (994)
T PRK07868 141 RDVHLVGYSQGGMFCYQAAAYRRSKDIASIVTFGSPVDTLAALPMGIPAGLAAAAADFMADHVFNRLDIPGWMARTGFQM 220 (994)
T ss_pred CceEEEEEChhHHHHHHHHHhcCCCccceEEEEecccccCCCCcccchhhhhhcccccchhhhhhcCCCCHHHHHHHHHh
Confidence 6899999999999999988755 54 99999988876543210000 00000 000 00000
Q ss_pred ---------cc----ccccccc------------cccc-ccCh---hhhhhhhcc-chh------hh---hcccccCceE
Q 022960 174 ---------FI----DVRNKKG------------KLEY-RVTQ---ESLMDRLST-DIH------AA---CHMICQDCRV 214 (289)
Q Consensus 174 ---------~~----~~~~~~~------------~~~~-~~~~---~~~~~~~~~-~~~------~~---~~~~~~~~P~ 214 (289)
+. ....... ...| .... ..+...+.. +.. .. ....++++|+
T Consensus 221 l~p~~~~~~~~~~~~~l~~~~~~~~~e~~~~~~~~~~w~~~~g~~~~~~~~~~~~~n~~~~g~~~~~~~~~~L~~i~~P~ 300 (994)
T PRK07868 221 LDPVKTAKARVDFLRQLHDREALLPREQQRRFLESEGWIAWSGPAISELLKQFIAHNRMMTGGFAINGQMVTLADITCPV 300 (994)
T ss_pred cChhHHHHHHHHHHHhcCchhhhccchhhHhHHHHhhccccchHHHHHHHHHHHHhCcccCceEEECCEEcchhhCCCCE
Confidence 00 0000000 0000 0000 011111110 000 00 0123568999
Q ss_pred EEEEeCCCCccChhhHHHHHhhCCCcEE-EEEcCCCcccc----cCchHHHHHHHHHHHhhcCC
Q 022960 215 LTIHGTKDKMVPAEDALEFDKFIPNHKL-HIIEGADHEFT----SHQDELASLVIQFIKANYQK 273 (289)
Q Consensus 215 l~i~g~~D~~~~~~~~~~~~~~~~~~~~-~~~~~~gH~~~----~~~~~~~~~i~~fl~~~~~~ 273 (289)
|+++|++|.++|++.++.+.+.++++++ .+++++||+.+ .-+++++..|.+||.++...
T Consensus 301 L~i~G~~D~ivp~~~~~~l~~~i~~a~~~~~~~~~GH~g~~~g~~a~~~~wp~i~~wl~~~~~~ 364 (994)
T PRK07868 301 LAFVGEVDDIGQPASVRGIRRAAPNAEVYESLIRAGHFGLVVGSRAAQQTWPTVADWVKWLEGD 364 (994)
T ss_pred EEEEeCCCCCCCHHHHHHHHHhCCCCeEEEEeCCCCCEeeeechhhhhhhChHHHHHHHHhccC
Confidence 9999999999999999999999999987 67899999944 23578999999999987643
No 76
>PRK10115 protease 2; Provisional
Probab=99.84 E-value=7.7e-19 Score=151.38 Aligned_cols=242 Identities=12% Similarity=0.060 Sum_probs=160.9
Q ss_pred ccceeeEEeeCCCCceEEEE-Eeec-----CCCcEEEEEcCCCCCCCCcchHHHHHHHHHcCccEEEEccccCCCCCCCc
Q 022960 19 VVQRRRVVIPNSHGEKLVGI-LHET-----GSKQLVIVCHGFQSTKDRIPMVNLAAALEREGISAFRFDFSGNGESEGSF 92 (289)
Q Consensus 19 ~~~~~~~~~~~~~g~~l~~~-~~~~-----~~~~~iv~~hG~~~~~~~~~~~~~~~~l~~~G~~v~~~d~~G~G~s~~~~ 92 (289)
....+.+.+++.||.++.++ ++.+ ++.|+||++||..+......|......|.++||.|+.++.||-|.-....
T Consensus 413 ~~~~e~v~~~s~DG~~Ip~~l~~~~~~~~~~~~P~ll~~hGg~~~~~~p~f~~~~~~l~~rG~~v~~~n~RGs~g~G~~w 492 (686)
T PRK10115 413 NYRSEHLWITARDGVEVPVSLVYHRKHFRKGHNPLLVYGYGSYGASIDADFSFSRLSLLDRGFVYAIVHVRGGGELGQQW 492 (686)
T ss_pred ccEEEEEEEECCCCCEEEEEEEEECCCCCCCCCCEEEEEECCCCCCCCCCccHHHHHHHHCCcEEEEEEcCCCCccCHHH
Confidence 45788899999999999985 4433 35699999999888775555777777899999999999999876554322
Q ss_pred ccc----chHHHHHHHHHHHHHHHhc---CCceEEEEEeChhHHHHHHHHHhCCC-ccEEEEeccCCcccccccccccch
Q 022960 93 LYG----NYRREAEDLRAIVQDFCAK---GRVITAIIGHSKGGNAVLLYASKYND-ISIVINISGRFNLKRGIEGRLGLG 164 (289)
Q Consensus 93 ~~~----~~~~~~~d~~~~i~~l~~~---~~~~~~l~G~S~Gg~~a~~~a~~~p~-v~~~v~~~~~~~~~~~~~~~~~~~ 164 (289)
... .-....+|+.+++++|.++ +.+++++.|.|.||+++..++.++|+ ++++|+..|..++...+.......
T Consensus 493 ~~~g~~~~k~~~~~D~~a~~~~Lv~~g~~d~~rl~i~G~S~GG~l~~~~~~~~Pdlf~A~v~~vp~~D~~~~~~~~~~p~ 572 (686)
T PRK10115 493 YEDGKFLKKKNTFNDYLDACDALLKLGYGSPSLCYGMGGSAGGMLMGVAINQRPELFHGVIAQVPFVDVVTTMLDESIPL 572 (686)
T ss_pred HHhhhhhcCCCcHHHHHHHHHHHHHcCCCChHHeEEEEECHHHHHHHHHHhcChhheeEEEecCCchhHhhhcccCCCCC
Confidence 111 0013368999999999877 46799999999999999999999999 999999999887654331110000
Q ss_pred hHhhhhhcCcccccccccccccccChhhhhhhhccchhhhhcccccCce-EEEEEeCCCCccChhhHHHHHhhCC----C
Q 022960 165 YLQRIKQNGFIDVRNKKGKLEYRVTQESLMDRLSTDIHAACHMICQDCR-VLTIHGTKDKMVPAEDALEFDKFIP----N 239 (289)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P-~l~i~g~~D~~~~~~~~~~~~~~~~----~ 239 (289)
....... + +. ....+............... +++.| +|+++|.+|..||+.++.++...+. +
T Consensus 573 ~~~~~~e--~-------G~---p~~~~~~~~l~~~SP~~~v~--~~~~P~lLi~~g~~D~RV~~~~~~k~~a~Lr~~~~~ 638 (686)
T PRK10115 573 TTGEFEE--W-------GN---PQDPQYYEYMKSYSPYDNVT--AQAYPHLLVTTGLHDSQVQYWEPAKWVAKLRELKTD 638 (686)
T ss_pred ChhHHHH--h-------CC---CCCHHHHHHHHHcCchhccC--ccCCCceeEEecCCCCCcCchHHHHHHHHHHhcCCC
Confidence 0000000 0 00 00111111111122222222 23678 6677999999999999988877763 3
Q ss_pred cEEEEE---cCCCcccccCchHH---HHHHHHHHHhhcCCC
Q 022960 240 HKLHII---EGADHEFTSHQDEL---ASLVIQFIKANYQKD 274 (289)
Q Consensus 240 ~~~~~~---~~~gH~~~~~~~~~---~~~i~~fl~~~~~~~ 274 (289)
.+++++ +++||.......+. ......||-..+..+
T Consensus 639 ~~~vl~~~~~~~GHg~~~~r~~~~~~~A~~~aFl~~~~~~~ 679 (686)
T PRK10115 639 DHLLLLCTDMDSGHGGKSGRFKSYEGVAMEYAFLIALAQGT 679 (686)
T ss_pred CceEEEEecCCCCCCCCcCHHHHHHHHHHHHHHHHHHhCCc
Confidence 567777 89999954433333 333466777766554
No 77
>TIGR02821 fghA_ester_D S-formylglutathione hydrolase. This model describes a protein family from bacteria, yeast, and human, with a conserved critical role in formaldehyde detoxification as S-formylglutathione hydrolase (EC 3.1.2.12). Members in eukaryotes such as the human protein are better known as esterase D (EC 3.1.1.1), an enzyme with broad specificity, although S-formylglutathione hydrolase has now been demonstrated as well.
Probab=99.84 E-value=1.5e-18 Score=134.97 Aligned_cols=225 Identities=16% Similarity=0.123 Sum_probs=128.7
Q ss_pred eeeEEeeCC-CCceEEEEEeec-----CCCcEEEEEcCCCCCCCCcchHHHHHHH-HHcCccEEEEcc--ccCCCCCCCc
Q 022960 22 RRRVVIPNS-HGEKLVGILHET-----GSKQLVIVCHGFQSTKDRIPMVNLAAAL-EREGISAFRFDF--SGNGESEGSF 92 (289)
Q Consensus 22 ~~~~~~~~~-~g~~l~~~~~~~-----~~~~~iv~~hG~~~~~~~~~~~~~~~~l-~~~G~~v~~~d~--~G~G~s~~~~ 92 (289)
.+..++.+. .+..+.+.++.| ++.|+|+++||++++...+.+......+ .+.|+.|+++|. +|+|.+....
T Consensus 13 ~~~~~~~s~~~~~~~~~~v~~P~~~~~~~~P~vvllHG~~~~~~~~~~~~~~~~la~~~g~~Vv~Pd~~~~g~~~~~~~~ 92 (275)
T TIGR02821 13 QGFYRHKSETCGVPMTFGVFLPPQAAAGPVPVLWYLSGLTCTHENFMIKAGAQRFAAEHGLALVAPDTSPRGTGIAGEDD 92 (275)
T ss_pred EEEEEEeccccCCceEEEEEcCCCccCCCCCEEEEccCCCCCccHHHhhhHHHHHHhhcCcEEEEeCCCCCcCCCCCCcc
Confidence 344444432 355666666544 2578999999999988763333333444 456999999998 5555332100
Q ss_pred --------------------cccchH-HHHHHHHHHHHHHHhcCCceEEEEEeChhHHHHHHHHHhCCC-ccEEEEeccC
Q 022960 93 --------------------LYGNYR-REAEDLRAIVQDFCAKGRVITAIIGHSKGGNAVLLYASKYND-ISIVINISGR 150 (289)
Q Consensus 93 --------------------~~~~~~-~~~~d~~~~i~~l~~~~~~~~~l~G~S~Gg~~a~~~a~~~p~-v~~~v~~~~~ 150 (289)
....+. ..++++..+++.....+.++++++||||||++++.++.++|+ ++++++++|.
T Consensus 93 ~w~~g~~~~~~~d~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~G~S~GG~~a~~~a~~~p~~~~~~~~~~~~ 172 (275)
T TIGR02821 93 AWDFGKGAGFYVDATEEPWSQHYRMYSYIVQELPALVAAQFPLDGERQGITGHSMGGHGALVIALKNPDRFKSVSAFAPI 172 (275)
T ss_pred cccccCCccccccCCcCcccccchHHHHHHHHHHHHHHhhCCCCCCceEEEEEChhHHHHHHHHHhCcccceEEEEECCc
Confidence 001111 223455555554212256789999999999999999999999 9999999987
Q ss_pred CcccccccccccchhHhhhhhcCcccccccccccccccChhhhhhhhccchhhhhcccccCceEEEEEeCCCCccCh-hh
Q 022960 151 FNLKRGIEGRLGLGYLQRIKQNGFIDVRNKKGKLEYRVTQESLMDRLSTDIHAACHMICQDCRVLTIHGTKDKMVPA-ED 229 (289)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~i~g~~D~~~~~-~~ 229 (289)
.+.... ............. ... .+. . .+............|+++.+|+.|+.+|. ..
T Consensus 173 ~~~~~~---~~~~~~~~~~l~~--------~~~-~~~--------~--~~~~~~~~~~~~~~plli~~G~~D~~v~~~~~ 230 (275)
T TIGR02821 173 VAPSRC---PWGQKAFSAYLGA--------DEA-AWR--------S--YDASLLVADGGRHSTILIDQGTADQFLDEQLR 230 (275)
T ss_pred cCcccC---cchHHHHHHHhcc--------ccc-chh--------h--cchHHHHhhcccCCCeeEeecCCCcccCcccc
Confidence 654211 0000011111000 000 000 0 00000011112367999999999999997 44
Q ss_pred HHHHHhhC----CCcEEEEEcCCCcccccCchHHHHHHHHHHHh
Q 022960 230 ALEFDKFI----PNHKLHIIEGADHEFTSHQDELASLVIQFIKA 269 (289)
Q Consensus 230 ~~~~~~~~----~~~~~~~~~~~gH~~~~~~~~~~~~i~~fl~~ 269 (289)
...+.+.+ ..+++..++|.+|.+.. -..+.....+|..+
T Consensus 231 ~~~~~~~l~~~g~~v~~~~~~g~~H~f~~-~~~~~~~~~~~~~~ 273 (275)
T TIGR02821 231 PDAFEQACRAAGQALTLRRQAGYDHSYYF-IASFIADHLRHHAE 273 (275)
T ss_pred HHHHHHHHHHcCCCeEEEEeCCCCccchh-HHHhHHHHHHHHHh
Confidence 44444443 34789999999999742 23444455555544
No 78
>COG3208 GrsT Predicted thioesterase involved in non-ribosomal peptide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.83 E-value=1.3e-19 Score=131.41 Aligned_cols=221 Identities=14% Similarity=0.167 Sum_probs=146.2
Q ss_pred cCCCcEEEEEcCCCCCCCCcchHHHHHHHHHcCccEEEEccccCCCCCCCccccchHHHHHHHHHHHHH-HHhcCCceEE
Q 022960 42 TGSKQLVIVCHGFQSTKDRIPMVNLAAALEREGISAFRFDFSGNGESEGSFLYGNYRREAEDLRAIVQD-FCAKGRVITA 120 (289)
Q Consensus 42 ~~~~~~iv~~hG~~~~~~~~~~~~~~~~l~~~G~~v~~~d~~G~G~s~~~~~~~~~~~~~~d~~~~i~~-l~~~~~~~~~ 120 (289)
++.++.++++|-.|+++. .|+.+...|... +.++.+++||+|..-+.+...++..+++.+...+.. . ...++.
T Consensus 4 ~~~~~~L~cfP~AGGsa~--~fr~W~~~lp~~-iel~avqlPGR~~r~~ep~~~di~~Lad~la~el~~~~---~d~P~a 77 (244)
T COG3208 4 PGARLRLFCFPHAGGSAS--LFRSWSRRLPAD-IELLAVQLPGRGDRFGEPLLTDIESLADELANELLPPL---LDAPFA 77 (244)
T ss_pred CCCCceEEEecCCCCCHH--HHHHHHhhCCch-hheeeecCCCcccccCCcccccHHHHHHHHHHHhcccc---CCCCee
Confidence 346678888998888884 488899888774 999999999999887777677778888777777763 3 344799
Q ss_pred EEEeChhHHHHHHHHHhCCC----ccEEEEeccC---CcccccccccccchhHhhhhhcCcccccccccccccccChhhh
Q 022960 121 IIGHSKGGNAVLLYASKYND----ISIVINISGR---FNLKRGIEGRLGLGYLQRIKQNGFIDVRNKKGKLEYRVTQESL 193 (289)
Q Consensus 121 l~G~S~Gg~~a~~~a~~~p~----v~~~v~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (289)
++||||||.+|.++|.+..+ +.++.+.+.. ......+.......+...+...+..............+....+
T Consensus 78 lfGHSmGa~lAfEvArrl~~~g~~p~~lfisg~~aP~~~~~~~i~~~~D~~~l~~l~~lgG~p~e~led~El~~l~LPil 157 (244)
T COG3208 78 LFGHSMGAMLAFEVARRLERAGLPPRALFISGCRAPHYDRGKQIHHLDDADFLADLVDLGGTPPELLEDPELMALFLPIL 157 (244)
T ss_pred ecccchhHHHHHHHHHHHHHcCCCcceEEEecCCCCCCcccCCccCCCHHHHHHHHHHhCCCChHHhcCHHHHHHHHHHH
Confidence 99999999999999987633 5556655432 2223334444445555555443322111111111111111111
Q ss_pred hhhh-ccchhhhhcccccCceEEEEEeCCCCccChhhHHHHHhhCC-CcEEEEEcCCCcccccC-chHHHHHHHHHHHh
Q 022960 194 MDRL-STDIHAACHMICQDCRVLTIHGTKDKMVPAEDALEFDKFIP-NHKLHIIEGADHEFTSH-QDELASLVIQFIKA 269 (289)
Q Consensus 194 ~~~~-~~~~~~~~~~~~~~~P~l~i~g~~D~~~~~~~~~~~~~~~~-~~~~~~~~~~gH~~~~~-~~~~~~~i~~fl~~ 269 (289)
...+ ............++||+.++.|++|..+..+....+.+..+ ..++..++| ||+++.+ .+++...|.+.+..
T Consensus 158 RAD~~~~e~Y~~~~~~pl~~pi~~~~G~~D~~vs~~~~~~W~~~t~~~f~l~~fdG-gHFfl~~~~~~v~~~i~~~l~~ 235 (244)
T COG3208 158 RADFRALESYRYPPPAPLACPIHAFGGEKDHEVSRDELGAWREHTKGDFTLRVFDG-GHFFLNQQREEVLARLEQHLAH 235 (244)
T ss_pred HHHHHHhcccccCCCCCcCcceEEeccCcchhccHHHHHHHHHhhcCCceEEEecC-cceehhhhHHHHHHHHHHHhhh
Confidence 1111 11111112223679999999999999999999999998887 589999996 9998754 46777777777753
No 79
>PLN00021 chlorophyllase
Probab=99.83 E-value=3.4e-18 Score=133.77 Aligned_cols=195 Identities=17% Similarity=0.196 Sum_probs=125.9
Q ss_pred eEEEEEeec---CCCcEEEEEcCCCCCCCCcchHHHHHHHHHcCccEEEEccccCCCCCCCccccchHHHHHHHHHHHHH
Q 022960 34 KLVGILHET---GSKQLVIVCHGFQSTKDRIPMVNLAAALEREGISAFRFDFSGNGESEGSFLYGNYRREAEDLRAIVQD 110 (289)
Q Consensus 34 ~l~~~~~~~---~~~~~iv~~hG~~~~~~~~~~~~~~~~l~~~G~~v~~~d~~G~G~s~~~~~~~~~~~~~~d~~~~i~~ 110 (289)
.+.+.++.| ++.|+||++||++.+.. .|..+++.|+++||.|+++|++|++.+... ...++..+++++
T Consensus 38 ~~p~~v~~P~~~g~~PvVv~lHG~~~~~~--~y~~l~~~Las~G~~VvapD~~g~~~~~~~-------~~i~d~~~~~~~ 108 (313)
T PLN00021 38 PKPLLVATPSEAGTYPVLLFLHGYLLYNS--FYSQLLQHIASHGFIVVAPQLYTLAGPDGT-------DEIKDAAAVINW 108 (313)
T ss_pred CceEEEEeCCCCCCCCEEEEECCCCCCcc--cHHHHHHHHHhCCCEEEEecCCCcCCCCch-------hhHHHHHHHHHH
Confidence 344445533 36789999999998875 489999999999999999999986533211 112334444444
Q ss_pred HHh-----------cCCceEEEEEeChhHHHHHHHHHhCCC------ccEEEEeccCCcccccccccccchhHhhhhhcC
Q 022960 111 FCA-----------KGRVITAIIGHSKGGNAVLLYASKYND------ISIVINISGRFNLKRGIEGRLGLGYLQRIKQNG 173 (289)
Q Consensus 111 l~~-----------~~~~~~~l~G~S~Gg~~a~~~a~~~p~------v~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (289)
+.+ .+.++++++|||+||.+++.++..+++ ++++|+++|......... ...
T Consensus 109 l~~~l~~~l~~~~~~d~~~v~l~GHS~GG~iA~~lA~~~~~~~~~~~v~ali~ldPv~g~~~~~~--~~p---------- 176 (313)
T PLN00021 109 LSSGLAAVLPEGVRPDLSKLALAGHSRGGKTAFALALGKAAVSLPLKFSALIGLDPVDGTSKGKQ--TPP---------- 176 (313)
T ss_pred HHhhhhhhcccccccChhheEEEEECcchHHHHHHHhhccccccccceeeEEeeccccccccccC--CCC----------
Confidence 432 144689999999999999999988863 788898887543321100 000
Q ss_pred cccccccccccccccChhhhhhhhccchhhhhcccccCceEEEEEeCCCC-----c----cChhh-HHHHHhhCC-CcEE
Q 022960 174 FIDVRNKKGKLEYRVTQESLMDRLSTDIHAACHMICQDCRVLTIHGTKDK-----M----VPAED-ALEFDKFIP-NHKL 242 (289)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~i~g~~D~-----~----~~~~~-~~~~~~~~~-~~~~ 242 (289)
.... .......+.+|+|++.+..|. . .|... ..++++.++ .+.+
T Consensus 177 ------------------~il~-------~~~~s~~~~~P~liig~g~~~~~~~~~~p~~ap~~~~~~~f~~~~~~~~~~ 231 (313)
T PLN00021 177 ------------------PVLT-------YAPHSFNLDIPVLVIGTGLGGEPRNPLFPPCAPDGVNHAEFFNECKAPAVH 231 (313)
T ss_pred ------------------cccc-------cCcccccCCCCeEEEecCCCcccccccccccCCCCCCHHHHHHhcCCCeee
Confidence 0000 000111247899999998763 2 22333 366777764 6888
Q ss_pred EEEcCCCcccc-cCc-----------------------hHHHHHHHHHHHhhcCCC
Q 022960 243 HIIEGADHEFT-SHQ-----------------------DELASLVIQFIKANYQKD 274 (289)
Q Consensus 243 ~~~~~~gH~~~-~~~-----------------------~~~~~~i~~fl~~~~~~~ 274 (289)
.+++++||.-+ ++. +.+...+..||...+...
T Consensus 232 ~~~~~~gH~~~~~~~~~~~~~~~~~~~c~~g~~~~~~r~~~~g~~~aFl~~~l~~~ 287 (313)
T PLN00021 232 FVAKDYGHMDMLDDDTSGIRGKITGCMCKNGKPRKPMRRFVGGAVVAFLKAYLEGD 287 (313)
T ss_pred eeecCCCcceeecCCCccccccccccccCCCCchHHHHHHHHHHHHHHHHHHhcCc
Confidence 89999999943 221 134557788998887654
No 80
>PLN02442 S-formylglutathione hydrolase
Probab=99.82 E-value=3e-18 Score=133.45 Aligned_cols=202 Identities=17% Similarity=0.157 Sum_probs=119.1
Q ss_pred CCCceEEEEEeec-----CCCcEEEEEcCCCCCCCCcch-HHHHHHHHHcCccEEEEccccCCCC-----CC------Cc
Q 022960 30 SHGEKLVGILHET-----GSKQLVIVCHGFQSTKDRIPM-VNLAAALEREGISAFRFDFSGNGES-----EG------SF 92 (289)
Q Consensus 30 ~~g~~l~~~~~~~-----~~~~~iv~~hG~~~~~~~~~~-~~~~~~l~~~G~~v~~~d~~G~G~s-----~~------~~ 92 (289)
.-|..+.+.++-| .+.|+|+++||++++...+.. ..+.+.+...|+.|+.+|..++|.. .. ..
T Consensus 27 ~l~~~~~~~vy~P~~~~~~~~Pvv~~lHG~~~~~~~~~~~~~~~~~~~~~g~~Vv~pd~~~~g~~~~~~~~~~~~~~~~~ 106 (283)
T PLN02442 27 TLGCSMTFSVYFPPASDSGKVPVLYWLSGLTCTDENFIQKSGAQRAAAARGIALVAPDTSPRGLNVEGEADSWDFGVGAG 106 (283)
T ss_pred ccCCceEEEEEcCCcccCCCCCEEEEecCCCcChHHHHHhhhHHHHHhhcCeEEEecCCCCCCCCCCCCccccccCCCcc
Confidence 3455666665533 256899999999988754211 2344666777999999998876621 10 00
Q ss_pred -----cc-----cch-HHHHHHHHHHHHHHHh-cCCceEEEEEeChhHHHHHHHHHhCCC-ccEEEEeccCCcccccccc
Q 022960 93 -----LY-----GNY-RREAEDLRAIVQDFCA-KGRVITAIIGHSKGGNAVLLYASKYND-ISIVINISGRFNLKRGIEG 159 (289)
Q Consensus 93 -----~~-----~~~-~~~~~d~~~~i~~l~~-~~~~~~~l~G~S~Gg~~a~~~a~~~p~-v~~~v~~~~~~~~~~~~~~ 159 (289)
.. ..+ ....+++..+++.... .+.++++++||||||+.|+.++.++|+ ++++++++|..+.....
T Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~i~G~S~GG~~a~~~a~~~p~~~~~~~~~~~~~~~~~~~-- 184 (283)
T PLN02442 107 FYLNATQEKWKNWRMYDYVVKELPKLLSDNFDQLDTSRASIFGHSMGGHGALTIYLKNPDKYKSVSAFAPIANPINCP-- 184 (283)
T ss_pred eeeccccCCCcccchhhhHHHHHHHHHHHHHHhcCCCceEEEEEChhHHHHHHHHHhCchhEEEEEEECCccCcccCc--
Confidence 00 011 1133455555544322 267789999999999999999999999 99999999876532110
Q ss_pred cccchhHhhhhhcCcccccccccccccccChhhhhhhhccchhhh-hcccccCceEEEEEeCCCCccChh-hHHHHHhhC
Q 022960 160 RLGLGYLQRIKQNGFIDVRNKKGKLEYRVTQESLMDRLSTDIHAA-CHMICQDCRVLTIHGTKDKMVPAE-DALEFDKFI 237 (289)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~P~l~i~g~~D~~~~~~-~~~~~~~~~ 237 (289)
......... +.. ..... ... +.... ......++|+++++|++|.+++.. .++.+.+.+
T Consensus 185 -~~~~~~~~~----~g~------------~~~~~-~~~--d~~~~~~~~~~~~~pvli~~G~~D~~v~~~~~s~~~~~~l 244 (283)
T PLN02442 185 -WGQKAFTNY----LGS------------DKADW-EEY--DATELVSKFNDVSATILIDQGEADKFLKEQLLPENFEEAC 244 (283)
T ss_pred -hhhHHHHHH----cCC------------ChhhH-HHc--ChhhhhhhccccCCCEEEEECCCCccccccccHHHHHHHH
Confidence 000001100 000 00000 000 00000 001124789999999999998863 244443332
Q ss_pred ----CCcEEEEEcCCCcccc
Q 022960 238 ----PNHKLHIIEGADHEFT 253 (289)
Q Consensus 238 ----~~~~~~~~~~~gH~~~ 253 (289)
.++++.++++.+|.+.
T Consensus 245 ~~~g~~~~~~~~pg~~H~~~ 264 (283)
T PLN02442 245 KEAGAPVTLRLQPGYDHSYF 264 (283)
T ss_pred HHcCCCeEEEEeCCCCccHH
Confidence 3579999999999864
No 81
>PRK10162 acetyl esterase; Provisional
Probab=99.82 E-value=4.5e-18 Score=134.67 Aligned_cols=227 Identities=15% Similarity=0.138 Sum_probs=137.9
Q ss_pred cceeeEEeeCCCCceEEEEEeecC--CCcEEEEEcCCCCCCCC-cchHHHHHHHHHc-CccEEEEccccCCCCCCCcccc
Q 022960 20 VQRRRVVIPNSHGEKLVGILHETG--SKQLVIVCHGFQSTKDR-IPMVNLAAALERE-GISAFRFDFSGNGESEGSFLYG 95 (289)
Q Consensus 20 ~~~~~~~~~~~~g~~l~~~~~~~~--~~~~iv~~hG~~~~~~~-~~~~~~~~~l~~~-G~~v~~~d~~G~G~s~~~~~~~ 95 (289)
+..+++.++..+| .+..+++.|. +.|+||++||++....+ ..+..+.+.|++. |+.|+.+|+|...+.
T Consensus 55 ~~~~~~~i~~~~g-~i~~~~y~P~~~~~p~vv~~HGGg~~~g~~~~~~~~~~~la~~~g~~Vv~vdYrlape~------- 126 (318)
T PRK10162 55 MATRAYMVPTPYG-QVETRLYYPQPDSQATLFYLHGGGFILGNLDTHDRIMRLLASYSGCTVIGIDYTLSPEA------- 126 (318)
T ss_pred ceEEEEEEecCCC-ceEEEEECCCCCCCCEEEEEeCCcccCCCchhhhHHHHHHHHHcCCEEEEecCCCCCCC-------
Confidence 4567788887777 4666666553 46899999998843211 2367788888874 999999999964332
Q ss_pred chHHHHHHHHHHHHHHHhc------CCceEEEEEeChhHHHHHHHHHhC------CC-ccEEEEeccCCccccccc-ccc
Q 022960 96 NYRREAEDLRAIVQDFCAK------GRVITAIIGHSKGGNAVLLYASKY------ND-ISIVINISGRFNLKRGIE-GRL 161 (289)
Q Consensus 96 ~~~~~~~d~~~~i~~l~~~------~~~~~~l~G~S~Gg~~a~~~a~~~------p~-v~~~v~~~~~~~~~~~~~-~~~ 161 (289)
.+....+|+.++++++.++ +.++++|+|+|+||.+++.++... +. ++++|+++|..+...... ...
T Consensus 127 ~~p~~~~D~~~a~~~l~~~~~~~~~d~~~i~l~G~SaGG~la~~~a~~~~~~~~~~~~~~~~vl~~p~~~~~~~~s~~~~ 206 (318)
T PRK10162 127 RFPQAIEEIVAVCCYFHQHAEDYGINMSRIGFAGDSAGAMLALASALWLRDKQIDCGKVAGVLLWYGLYGLRDSVSRRLL 206 (318)
T ss_pred CCCCcHHHHHHHHHHHHHhHHHhCCChhHEEEEEECHHHHHHHHHHHHHHhcCCCccChhheEEECCccCCCCChhHHHh
Confidence 2334467777777777543 346899999999999999988753 23 899999998776421100 000
Q ss_pred cch-------hHhhhhhcCcccccccccccccccChhhhhhhhccchhhhhcccccCceEEEEEeCCCCccChhhHHHHH
Q 022960 162 GLG-------YLQRIKQNGFIDVRNKKGKLEYRVTQESLMDRLSTDIHAACHMICQDCRVLTIHGTKDKMVPAEDALEFD 234 (289)
Q Consensus 162 ~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~i~g~~D~~~~~~~~~~~~ 234 (289)
... -...+......+ .....+........... .--.|+++++|+.|++.+ ..+.+.
T Consensus 207 ~~~~~~l~~~~~~~~~~~y~~~-------------~~~~~~p~~~p~~~~l~--~~lPp~~i~~g~~D~L~d--e~~~~~ 269 (318)
T PRK10162 207 GGVWDGLTQQDLQMYEEAYLSN-------------DADRESPYYCLFNNDLT--RDVPPCFIAGAEFDPLLD--DSRLLY 269 (318)
T ss_pred CCCccccCHHHHHHHHHHhCCC-------------ccccCCcccCcchhhhh--cCCCCeEEEecCCCcCcC--hHHHHH
Confidence 000 000000000000 00000000000000000 113699999999999864 455555
Q ss_pred hhC----CCcEEEEEcCCCcccccC------chHHHHHHHHHHHhhc
Q 022960 235 KFI----PNHKLHIIEGADHEFTSH------QDELASLVIQFIKANY 271 (289)
Q Consensus 235 ~~~----~~~~~~~~~~~gH~~~~~------~~~~~~~i~~fl~~~~ 271 (289)
+.+ ..++++.++|..|.+... ..+..+.+.+||.+.+
T Consensus 270 ~~L~~aGv~v~~~~~~g~~H~f~~~~~~~~~a~~~~~~~~~~l~~~~ 316 (318)
T PRK10162 270 QTLAAHQQPCEFKLYPGTLHAFLHYSRMMDTADDALRDGAQFFTAQL 316 (318)
T ss_pred HHHHHcCCCEEEEEECCCceehhhccCchHHHHHHHHHHHHHHHHHh
Confidence 444 358999999999986421 2467788888998765
No 82
>PF02230 Abhydrolase_2: Phospholipase/Carboxylesterase; InterPro: IPR003140 This entry represents the alpha/beta hydrolase domain found in phospholipases [], carboxylesterases [] and thioesterases.; GO: 0016787 hydrolase activity; PDB: 3U0V_A 1AUR_A 1AUO_B 1FJ2_B 3CN9_A 3CN7_A.
Probab=99.82 E-value=6.3e-19 Score=132.19 Aligned_cols=177 Identities=24% Similarity=0.309 Sum_probs=108.0
Q ss_pred CCcEEEEEcCCCCCCCCcchHHHHH-HHHHcCccEEEEcccc------CCC---CCC-----Cc----cccchHHHHHHH
Q 022960 44 SKQLVIVCHGFQSTKDRIPMVNLAA-ALEREGISAFRFDFSG------NGE---SEG-----SF----LYGNYRREAEDL 104 (289)
Q Consensus 44 ~~~~iv~~hG~~~~~~~~~~~~~~~-~l~~~G~~v~~~d~~G------~G~---s~~-----~~----~~~~~~~~~~d~ 104 (289)
..++||++||+|++.+. +..+.. .+......++.++-|. .|. +.- .. ....+...++.+
T Consensus 13 ~~~lvi~LHG~G~~~~~--~~~~~~~~~~~~~~~~i~p~ap~~~~~~~~g~~~~~Wf~~~~~~~~~~~~~~~i~~s~~~l 90 (216)
T PF02230_consen 13 AKPLVILLHGYGDSEDL--FALLAELNLALPNTRFISPRAPSRPVTVPGGYRMPAWFDIYDFDPEGPEDEAGIEESAERL 90 (216)
T ss_dssp -SEEEEEE--TTS-HHH--HHHHHHHHTCSTTEEEEEE---EEE-GGGTT-EEE-SS-BSCSSSSSEB-HHHHHHHHHHH
T ss_pred CceEEEEECCCCCCcch--hHHHHhhcccCCceEEEeccCCCCCcccccccCCCceeeccCCCcchhhhHHHHHHHHHHH
Confidence 67899999999998743 444443 1222346677765441 122 110 00 112233344556
Q ss_pred HHHHHHHHhc--CCceEEEEEeChhHHHHHHHHHhCCC-ccEEEEeccCCcccccccccccchhHhhhhhcCcccccccc
Q 022960 105 RAIVQDFCAK--GRVITAIIGHSKGGNAVLLYASKYND-ISIVINISGRFNLKRGIEGRLGLGYLQRIKQNGFIDVRNKK 181 (289)
Q Consensus 105 ~~~i~~l~~~--~~~~~~l~G~S~Gg~~a~~~a~~~p~-v~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (289)
.++++...+. +.+++++.|+|.||.+|+.++.++|+ +.++|++++.+..........
T Consensus 91 ~~li~~~~~~~i~~~ri~l~GFSQGa~~al~~~l~~p~~~~gvv~lsG~~~~~~~~~~~~-------------------- 150 (216)
T PF02230_consen 91 DELIDEEVAYGIDPSRIFLGGFSQGAAMALYLALRYPEPLAGVVALSGYLPPESELEDRP-------------------- 150 (216)
T ss_dssp HHHHHHHHHTT--GGGEEEEEETHHHHHHHHHHHCTSSTSSEEEEES---TTGCCCHCCH--------------------
T ss_pred HHHHHHHHHcCCChhheehhhhhhHHHHHHHHHHHcCcCcCEEEEeeccccccccccccc--------------------
Confidence 6666655444 55689999999999999999999999 999999998654332111000
Q ss_pred cccccccChhhhhhhhccchhhhhcccccCceEEEEEeCCCCccChhhHHHHHhhC----CCcEEEEEcCCCcccccCch
Q 022960 182 GKLEYRVTQESLMDRLSTDIHAACHMICQDCRVLTIHGTKDKMVPAEDALEFDKFI----PNHKLHIIEGADHEFTSHQD 257 (289)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~i~g~~D~~~~~~~~~~~~~~~----~~~~~~~~~~~gH~~~~~~~ 257 (289)
.. .-++|++++||++|+++|.+.++...+.+ .+++++.+++.||.. ..
T Consensus 151 ------------------------~~-~~~~pi~~~hG~~D~vvp~~~~~~~~~~L~~~~~~v~~~~~~g~gH~i---~~ 202 (216)
T PF02230_consen 151 ------------------------EA-LAKTPILIIHGDEDPVVPFEWAEKTAEFLKAAGANVEFHEYPGGGHEI---SP 202 (216)
T ss_dssp ------------------------CC-CCTS-EEEEEETT-SSSTHHHHHHHHHHHHCTT-GEEEEEETT-SSS-----H
T ss_pred ------------------------cc-cCCCcEEEEecCCCCcccHHHHHHHHHHHHhcCCCEEEEEcCCCCCCC---CH
Confidence 00 01579999999999999998877766555 357999999999987 46
Q ss_pred HHHHHHHHHHHhh
Q 022960 258 ELASLVIQFIKAN 270 (289)
Q Consensus 258 ~~~~~i~~fl~~~ 270 (289)
+..+.+.+||+++
T Consensus 203 ~~~~~~~~~l~~~ 215 (216)
T PF02230_consen 203 EELRDLREFLEKH 215 (216)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhh
Confidence 7788899999875
No 83
>TIGR01840 esterase_phb esterase, PHB depolymerase family. This model describes a subfamily among lipases of the ab-hydrolase family. This subfamily includes bacterial depolymerases for poly(3-hydroxybutyrate) (PHB) and related polyhydroxyalkanoates (PHA), as well as acetyl xylan esterases, feruloyl esterases, and others from fungi.
Probab=99.81 E-value=7.7e-19 Score=131.41 Aligned_cols=171 Identities=18% Similarity=0.153 Sum_probs=106.3
Q ss_pred CCcEEEEEcCCCCCCCCcchH---HHHHHHHHcCccEEEEccccCCCCCCCccc------cchHHHHHHHHHHHHHHHhc
Q 022960 44 SKQLVIVCHGFQSTKDRIPMV---NLAAALEREGISAFRFDFSGNGESEGSFLY------GNYRREAEDLRAIVQDFCAK 114 (289)
Q Consensus 44 ~~~~iv~~hG~~~~~~~~~~~---~~~~~l~~~G~~v~~~d~~G~G~s~~~~~~------~~~~~~~~d~~~~i~~l~~~ 114 (289)
+.|+||++||.+++... +. .+.+.+.+.||.|+++|++|++.+...... ........++..+++++.++
T Consensus 12 ~~P~vv~lHG~~~~~~~--~~~~~~~~~~a~~~g~~Vv~Pd~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 89 (212)
T TIGR01840 12 PRALVLALHGCGQTASA--YVIDWGWKAAADRYGFVLVAPEQTSYNSSNNCWDWFFTHHRARGTGEVESLHQLIDAVKAN 89 (212)
T ss_pred CCCEEEEeCCCCCCHHH--HhhhcChHHHHHhCCeEEEecCCcCccccCCCCCCCCccccCCCCccHHHHHHHHHHHHHh
Confidence 67899999999987654 32 245555567999999999998754321110 01123456777888887665
Q ss_pred ---CCceEEEEEeChhHHHHHHHHHhCCC-ccEEEEeccCCcccccccccccchhHhhhhhcCcccccccccccccccCh
Q 022960 115 ---GRVITAIIGHSKGGNAVLLYASKYND-ISIVINISGRFNLKRGIEGRLGLGYLQRIKQNGFIDVRNKKGKLEYRVTQ 190 (289)
Q Consensus 115 ---~~~~~~l~G~S~Gg~~a~~~a~~~p~-v~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (289)
+.++++|+|||+||.+++.++..+|+ +.+++.+++........... ....+ ......
T Consensus 90 ~~id~~~i~l~G~S~Gg~~a~~~a~~~p~~~~~~~~~~g~~~~~~~~~~~----~~~~~---------------~~~~~~ 150 (212)
T TIGR01840 90 YSIDPNRVYVTGLSAGGGMTAVLGCTYPDVFAGGASNAGLPYGEASSSIS----ATPQM---------------CTAATA 150 (212)
T ss_pred cCcChhheEEEEECHHHHHHHHHHHhCchhheEEEeecCCcccccccchh----hHhhc---------------CCCCCH
Confidence 44689999999999999999999999 89988888754322110000 00000 000000
Q ss_pred hhhhhhhccchhhhhcccccCceEEEEEeCCCCccChhhHHHHHhhCC
Q 022960 191 ESLMDRLSTDIHAACHMICQDCRVLTIHGTKDKMVPAEDALEFDKFIP 238 (289)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~P~l~i~g~~D~~~~~~~~~~~~~~~~ 238 (289)
..+.+..... .. .......|++++||++|.+||++.++.+.+.+.
T Consensus 151 ~~~~~~~~~~-~~--~~~~~~p~~~i~hG~~D~vVp~~~~~~~~~~l~ 195 (212)
T TIGR01840 151 ASVCRLVRGM-QS--EYNGPTPIMSVVHGDADYTVLPGNADEIRDAML 195 (212)
T ss_pred HHHHHHHhcc-CC--cccCCCCeEEEEEcCCCceeCcchHHHHHHHHH
Confidence 1111111000 00 011124567899999999999999988877763
No 84
>COG3458 Acetyl esterase (deacetylase) [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.81 E-value=2.4e-18 Score=125.63 Aligned_cols=242 Identities=18% Similarity=0.154 Sum_probs=159.6
Q ss_pred cCccCCcccceeeEEeeCCCCceEEEEEeecC----CCcEEEEEcCCCCCCCCcchHHHHHHHHHcCccEEEEccccCCC
Q 022960 12 QGFQQDPVVQRRRVVIPNSHGEKLVGILHETG----SKQLVIVCHGFQSTKDRIPMVNLAAALEREGISAFRFDFSGNGE 87 (289)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~----~~~~iv~~hG~~~~~~~~~~~~~~~~l~~~G~~v~~~d~~G~G~ 87 (289)
......+.++.-+++|+..+|.+|.+|+.-|. ..|.||-.||+++... .|..+. .++..||.|+.+|.||.|.
T Consensus 46 ~~d~~~~~ve~ydvTf~g~~g~rI~gwlvlP~~~~~~~P~vV~fhGY~g~~g--~~~~~l-~wa~~Gyavf~MdvRGQg~ 122 (321)
T COG3458 46 RSDFTLPRVEVYDVTFTGYGGARIKGWLVLPRHEKGKLPAVVQFHGYGGRGG--EWHDML-HWAVAGYAVFVMDVRGQGS 122 (321)
T ss_pred eccccCCceEEEEEEEeccCCceEEEEEEeecccCCccceEEEEeeccCCCC--Cccccc-cccccceeEEEEecccCCC
Confidence 33344556788899999999999999987653 5689999999999884 355544 3455699999999999998
Q ss_pred CCCC---------------------ccccchHHHHHHHHHHHHHHHhc---CCceEEEEEeChhHHHHHHHHHhCCCccE
Q 022960 88 SEGS---------------------FLYGNYRREAEDLRAIVQDFCAK---GRVITAIIGHSKGGNAVLLYASKYNDISI 143 (289)
Q Consensus 88 s~~~---------------------~~~~~~~~~~~d~~~~i~~l~~~---~~~~~~l~G~S~Gg~~a~~~a~~~p~v~~ 143 (289)
|... ....-+.....|+..+++.+... +-++|.+.|.|.||.+++.+++..|.+++
T Consensus 123 ~~~dt~~~p~~~s~pG~mtrGilD~kd~yyyr~v~~D~~~ave~~~sl~~vde~Ri~v~G~SqGGglalaaaal~~rik~ 202 (321)
T COG3458 123 SSQDTADPPGGPSDPGFMTRGILDRKDTYYYRGVFLDAVRAVEILASLDEVDEERIGVTGGSQGGGLALAAAALDPRIKA 202 (321)
T ss_pred ccccCCCCCCCCcCCceeEeecccCCCceEEeeehHHHHHHHHHHhccCccchhheEEeccccCchhhhhhhhcChhhhc
Confidence 7320 01111233457777777777554 56799999999999999999999999999
Q ss_pred EEEeccCCcccccccccccchhHhhhhhcCcccccccccccccccChhhhhhhhcc-chhhhhcccccCceEEEEEeCCC
Q 022960 144 VINISGRFNLKRGIEGRLGLGYLQRIKQNGFIDVRNKKGKLEYRVTQESLMDRLST-DIHAACHMICQDCRVLTIHGTKD 222 (289)
Q Consensus 144 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~P~l~i~g~~D 222 (289)
++++-|.+.-...............+.. +...-.. ........+.. +..... .++++|+|+..|-.|
T Consensus 203 ~~~~~Pfl~df~r~i~~~~~~~ydei~~--y~k~h~~--------~e~~v~~TL~yfD~~n~A--~RiK~pvL~svgL~D 270 (321)
T COG3458 203 VVADYPFLSDFPRAIELATEGPYDEIQT--YFKRHDP--------KEAEVFETLSYFDIVNLA--ARIKVPVLMSVGLMD 270 (321)
T ss_pred ccccccccccchhheeecccCcHHHHHH--HHHhcCc--------hHHHHHHHHhhhhhhhHH--HhhccceEEeecccC
Confidence 9999887654332222221111111110 0000000 01111111111 111111 256899999999999
Q ss_pred CccChhhHHHHHhhCCC-cEEEEEcCCCcccccCchHHHHHHHHHHHhh
Q 022960 223 KMVPAEDALEFDKFIPN-HKLHIIEGADHEFTSHQDELASLVIQFIKAN 270 (289)
Q Consensus 223 ~~~~~~~~~~~~~~~~~-~~~~~~~~~gH~~~~~~~~~~~~i~~fl~~~ 270 (289)
+++|+...-..++.++. +++.+++.-+|.-. +.-..+.+..|+...
T Consensus 271 ~vcpPstqFA~yN~l~~~K~i~iy~~~aHe~~--p~~~~~~~~~~l~~l 317 (321)
T COG3458 271 PVCPPSTQFAAYNALTTSKTIEIYPYFAHEGG--PGFQSRQQVHFLKIL 317 (321)
T ss_pred CCCCChhhHHHhhcccCCceEEEeeccccccC--cchhHHHHHHHHHhh
Confidence 99999999999999875 67788887778743 223345566777654
No 85
>COG0596 MhpC Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]
Probab=99.80 E-value=1e-17 Score=130.04 Aligned_cols=216 Identities=20% Similarity=0.246 Sum_probs=129.8
Q ss_pred CcEEEEEcCCCCCCCCcchHHHHHHHHHc--CccEEEEccccCCCCCCCccccchHHHHHHHHHHHHHHHhcCCceEEEE
Q 022960 45 KQLVIVCHGFQSTKDRIPMVNLAAALERE--GISAFRFDFSGNGESEGSFLYGNYRREAEDLRAIVQDFCAKGRVITAII 122 (289)
Q Consensus 45 ~~~iv~~hG~~~~~~~~~~~~~~~~l~~~--G~~v~~~d~~G~G~s~~~~~~~~~~~~~~d~~~~i~~l~~~~~~~~~l~ 122 (289)
.|+++++||++++... |......+... .|+++.+|+||||.|. .. .......++++..+++.+ +..+++++
T Consensus 21 ~~~i~~~hg~~~~~~~--~~~~~~~~~~~~~~~~~~~~d~~g~g~s~-~~-~~~~~~~~~~~~~~~~~~---~~~~~~l~ 93 (282)
T COG0596 21 GPPLVLLHGFPGSSSV--WRPVFKVLPALAARYRVIAPDLRGHGRSD-PA-GYSLSAYADDLAALLDAL---GLEKVVLV 93 (282)
T ss_pred CCeEEEeCCCCCchhh--hHHHHHHhhccccceEEEEecccCCCCCC-cc-cccHHHHHHHHHHHHHHh---CCCceEEE
Confidence 6699999999998865 55432333332 1899999999999997 11 122233377888888877 66679999
Q ss_pred EeChhHHHHHHHHHhCCC-ccEEEEeccCCcccccc-------ccc---c----c-----chhHhhhhhcC-cccccc--
Q 022960 123 GHSKGGNAVLLYASKYND-ISIVINISGRFNLKRGI-------EGR---L----G-----LGYLQRIKQNG-FIDVRN-- 179 (289)
Q Consensus 123 G~S~Gg~~a~~~a~~~p~-v~~~v~~~~~~~~~~~~-------~~~---~----~-----~~~~~~~~~~~-~~~~~~-- 179 (289)
|||+||.+++.++.++|+ ++++|++++........ ... . . ........... ......
T Consensus 94 G~S~Gg~~~~~~~~~~p~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (282)
T COG0596 94 GHSMGGAVALALALRHPDRVRGLVLIGPAPPPGLLEAALRQPAGAAPLAALADLLLGLDAAAFAALLAALGLLAALAAAA 173 (282)
T ss_pred EecccHHHHHHHHHhcchhhheeeEecCCCCcccccCccccCccccchhhhhhhhhccchhhhhhhhhcccccccccccc
Confidence 999999999999999999 99999998754310000 000 0 0 00000000000 000000
Q ss_pred ---cccccc---cccChh---hh----hhhhccchh---hhhcccccCceEEEEEeCCCCccChhhHHHHHhhCCC-cEE
Q 022960 180 ---KKGKLE---YRVTQE---SL----MDRLSTDIH---AACHMICQDCRVLTIHGTKDKMVPAEDALEFDKFIPN-HKL 242 (289)
Q Consensus 180 ---~~~~~~---~~~~~~---~~----~~~~~~~~~---~~~~~~~~~~P~l~i~g~~D~~~~~~~~~~~~~~~~~-~~~ 242 (289)
...... ...... .. ......... .......+++|+++++|++|.+.|......+.+..++ .++
T Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~i~g~~d~~~~~~~~~~~~~~~~~~~~~ 253 (282)
T COG0596 174 RAGLAEALRAPLLGAAAAAFARAARADLAAALLALLDRDLRAALARITVPTLIIHGEDDPVVPAELARRLAAALPNDARL 253 (282)
T ss_pred hhccccccccccchhHhhhhhhhcccccchhhhcccccccchhhccCCCCeEEEecCCCCcCCHHHHHHHHhhCCCCceE
Confidence 000000 000000 00 000000000 1112224579999999999977776666777788885 999
Q ss_pred EEEcCCCcccc-cCchHHHHHHHHHH
Q 022960 243 HIIEGADHEFT-SHQDELASLVIQFI 267 (289)
Q Consensus 243 ~~~~~~gH~~~-~~~~~~~~~i~~fl 267 (289)
..++++||..+ ++++.+.+.+.+|+
T Consensus 254 ~~~~~~gH~~~~~~p~~~~~~i~~~~ 279 (282)
T COG0596 254 VVIPGAGHFPHLEAPEAFAAALLAFL 279 (282)
T ss_pred EEeCCCCCcchhhcHHHHHHHHHHHH
Confidence 99999999976 55677777777744
No 86
>TIGR00976 /NonD putative hydrolase, CocE/NonD family. This model represents a protein subfamily that includes the cocaine esterase CocE, several glutaryl-7-ACA acylases, and the putative diester hydrolase NonD of Streptomyces griseus (all hydrolases). This family shows extensive, low-level similarity to a family of xaa-pro dipeptidyl-peptidases, and local similarity by PSI-BLAST to many other hydrolases.
Probab=99.79 E-value=1.2e-17 Score=141.98 Aligned_cols=128 Identities=19% Similarity=0.150 Sum_probs=102.4
Q ss_pred eeCCCCceEEEEEeecC---CCcEEEEEcCCCCCCCC--cchHHHHHHHHHcCccEEEEccccCCCCCCCccccchHHHH
Q 022960 27 IPNSHGEKLVGILHETG---SKQLVIVCHGFQSTKDR--IPMVNLAAALEREGISAFRFDFSGNGESEGSFLYGNYRREA 101 (289)
Q Consensus 27 ~~~~~g~~l~~~~~~~~---~~~~iv~~hG~~~~~~~--~~~~~~~~~l~~~G~~v~~~d~~G~G~s~~~~~~~~~~~~~ 101 (289)
+++.||.+|++.++.|. +.|+||++||++..... .........|+++||.|+++|+||+|.|.+...... ...+
T Consensus 1 i~~~DG~~L~~~~~~P~~~~~~P~Il~~~gyg~~~~~~~~~~~~~~~~l~~~Gy~vv~~D~RG~g~S~g~~~~~~-~~~~ 79 (550)
T TIGR00976 1 VPMRDGTRLAIDVYRPAGGGPVPVILSRTPYGKDAGLRWGLDKTEPAWFVAQGYAVVIQDTRGRGASEGEFDLLG-SDEA 79 (550)
T ss_pred CcCCCCCEEEEEEEecCCCCCCCEEEEecCCCCchhhccccccccHHHHHhCCcEEEEEeccccccCCCceEecC-cccc
Confidence 35679999998877653 56899999999976420 012235568889999999999999999998764443 5678
Q ss_pred HHHHHHHHHHHhc--CCceEEEEEeChhHHHHHHHHHhCCC-ccEEEEeccCCcccc
Q 022960 102 EDLRAIVQDFCAK--GRVITAIIGHSKGGNAVLLYASKYND-ISIVINISGRFNLKR 155 (289)
Q Consensus 102 ~d~~~~i~~l~~~--~~~~~~l~G~S~Gg~~a~~~a~~~p~-v~~~v~~~~~~~~~~ 155 (289)
+|+.++++++..+ ...+++++|+|+||.+++.+|..+|. ++++|..++..+...
T Consensus 80 ~D~~~~i~~l~~q~~~~~~v~~~G~S~GG~~a~~~a~~~~~~l~aiv~~~~~~d~~~ 136 (550)
T TIGR00976 80 ADGYDLVDWIAKQPWCDGNVGMLGVSYLAVTQLLAAVLQPPALRAIAPQEGVWDLYR 136 (550)
T ss_pred hHHHHHHHHHHhCCCCCCcEEEEEeChHHHHHHHHhccCCCceeEEeecCcccchhH
Confidence 9999999999876 23589999999999999999999877 999999888766543
No 87
>PF02273 Acyl_transf_2: Acyl transferase; InterPro: IPR003157 LuxD proteins are bacterial acyl transferases. Together with an acyl-protein synthetase (LuxE) and reductase (LuxC), they form a multienzyme complex. This complex channels activated fatty acids into the aldehyde substrate for the luciferase-catalyzed bacterial bioluminescence reaction [, ]. ; GO: 0016746 transferase activity, transferring acyl groups, 0006631 fatty acid metabolic process; PDB: 1THT_B.
Probab=99.79 E-value=3.4e-17 Score=117.91 Aligned_cols=225 Identities=18% Similarity=0.233 Sum_probs=128.9
Q ss_pred EEeeCCCCceEEEEEeecC-----CCcEEEEEcCCCCCCCCcchHHHHHHHHHcCccEEEEccccC-CCCCCCccccchH
Q 022960 25 VVIPNSHGEKLVGILHETG-----SKQLVIVCHGFQSTKDRIPMVNLAAALEREGISAFRFDFSGN-GESEGSFLYGNYR 98 (289)
Q Consensus 25 ~~~~~~~g~~l~~~~~~~~-----~~~~iv~~hG~~~~~~~~~~~~~~~~l~~~G~~v~~~d~~G~-G~s~~~~~~~~~~ 98 (289)
..+...+|.+++.|-..|. ..++||+.+|++..... +..++.+|+..||+|+.+|.-.| |.|++.....++.
T Consensus 5 hvi~~~~~~~I~vwet~P~~~~~~~~~tiliA~Gf~rrmdh--~agLA~YL~~NGFhViRyDsl~HvGlSsG~I~eftms 82 (294)
T PF02273_consen 5 HVIRLEDGRQIRVWETRPKNNEPKRNNTILIAPGFARRMDH--FAGLAEYLSANGFHVIRYDSLNHVGLSSGDINEFTMS 82 (294)
T ss_dssp EEEEETTTEEEEEEEE---TTS---S-EEEEE-TT-GGGGG--GHHHHHHHHTTT--EEEE---B-------------HH
T ss_pred ceeEcCCCCEEEEeccCCCCCCcccCCeEEEecchhHHHHH--HHHHHHHHhhCCeEEEeccccccccCCCCChhhcchH
Confidence 4455678889997766554 45899999999988865 89999999999999999999877 9999998888888
Q ss_pred HHHHHHHHHHHHHHhcCCceEEEEEeChhHHHHHHHHHhCCCccEEEEeccCCcccccccccccchhHhhhhhcCccccc
Q 022960 99 REAEDLRAIVQDFCAKGRVITAIIGHSKGGNAVLLYASKYNDISIVINISGRFNLKRGIEGRLGLGYLQRIKQNGFIDVR 178 (289)
Q Consensus 99 ~~~~d~~~~i~~l~~~~~~~~~l~G~S~Gg~~a~~~a~~~p~v~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (289)
...+++..+++|++..+..++.|+.-|+.|.+|+..++.- ++.-+|..-+..++...+.+.+...+....... ..
T Consensus 83 ~g~~sL~~V~dwl~~~g~~~~GLIAaSLSaRIAy~Va~~i-~lsfLitaVGVVnlr~TLe~al~~Dyl~~~i~~----lp 157 (294)
T PF02273_consen 83 IGKASLLTVIDWLATRGIRRIGLIAASLSARIAYEVAADI-NLSFLITAVGVVNLRDTLEKALGYDYLQLPIEQ----LP 157 (294)
T ss_dssp HHHHHHHHHHHHHHHTT---EEEEEETTHHHHHHHHTTTS---SEEEEES--S-HHHHHHHHHSS-GGGS-GGG------
T ss_pred HhHHHHHHHHHHHHhcCCCcchhhhhhhhHHHHHHHhhcc-CcceEEEEeeeeeHHHHHHHHhccchhhcchhh----CC
Confidence 8899999999999988999999999999999999998843 688888888888776655555544444322111 11
Q ss_pred ccccccccccChhhhhh-hhccchh----hhhcccccCceEEEEEeCCCCccChhhHHHHHhhCC--CcEEEEEcCCCcc
Q 022960 179 NKKGKLEYRVTQESLMD-RLSTDIH----AACHMICQDCRVLTIHGTKDKMVPAEDALEFDKFIP--NHKLHIIEGADHE 251 (289)
Q Consensus 179 ~~~~~~~~~~~~~~~~~-~~~~~~~----~~~~~~~~~~P~l~i~g~~D~~~~~~~~~~~~~~~~--~~~~~~~~~~gH~ 251 (289)
............+.+.. .+...+. .......+.+|++.+++++|.+|......++...+. .+++..++|++|.
T Consensus 158 ~dldfeGh~l~~~vFv~dc~e~~w~~l~ST~~~~k~l~iP~iaF~A~~D~WV~q~eV~~~~~~~~s~~~klysl~Gs~Hd 237 (294)
T PF02273_consen 158 EDLDFEGHNLGAEVFVTDCFEHGWDDLDSTINDMKRLSIPFIAFTANDDDWVKQSEVEELLDNINSNKCKLYSLPGSSHD 237 (294)
T ss_dssp SEEEETTEEEEHHHHHHHHHHTT-SSHHHHHHHHTT--S-EEEEEETT-TTS-HHHHHHHHTT-TT--EEEEEETT-SS-
T ss_pred CcccccccccchHHHHHHHHHcCCccchhHHHHHhhCCCCEEEEEeCCCccccHHHHHHHHHhcCCCceeEEEecCccch
Confidence 10011111122222211 1111111 111112458999999999999999999988888664 4789999999999
Q ss_pred cccCc
Q 022960 252 FTSHQ 256 (289)
Q Consensus 252 ~~~~~ 256 (289)
+-+.+
T Consensus 238 L~enl 242 (294)
T PF02273_consen 238 LGENL 242 (294)
T ss_dssp TTSSH
T ss_pred hhhCh
Confidence 76554
No 88
>PF06342 DUF1057: Alpha/beta hydrolase of unknown function (DUF1057); InterPro: IPR010463 This entry consists of proteins of unknown function which have an alpha/beta hydrolase fold.
Probab=99.77 E-value=9.5e-17 Score=118.94 Aligned_cols=125 Identities=18% Similarity=0.269 Sum_probs=97.9
Q ss_pred ceeeEEeeCCCCceEE--EEEee--c-C-CCcEEEEEcCCCCCCCCcchHHHHHHHHHcCccEEEEccccCCCCCCCcc-
Q 022960 21 QRRRVVIPNSHGEKLV--GILHE--T-G-SKQLVIVCHGFQSTKDRIPMVNLAAALEREGISAFRFDFSGNGESEGSFL- 93 (289)
Q Consensus 21 ~~~~~~~~~~~g~~l~--~~~~~--~-~-~~~~iv~~hG~~~~~~~~~~~~~~~~l~~~G~~v~~~d~~G~G~s~~~~~- 93 (289)
....+.+...+|..+. ..|.. + | +..+||-+||.+|+..+ ++.+.+.|.+.|+++|.+++||+|.+.+...
T Consensus 5 ~~~~~k~~~~~~~~~~~~a~y~D~~~~gs~~gTVv~~hGsPGSH~D--FkYi~~~l~~~~iR~I~iN~PGf~~t~~~~~~ 82 (297)
T PF06342_consen 5 VRKLVKFQAENGKIVTVQAVYEDSLPSGSPLGTVVAFHGSPGSHND--FKYIRPPLDEAGIRFIGINYPGFGFTPGYPDQ 82 (297)
T ss_pred EEEEEEcccccCceEEEEEEEEecCCCCCCceeEEEecCCCCCccc--hhhhhhHHHHcCeEEEEeCCCCCCCCCCCccc
Confidence 3455666666665544 33332 2 2 34589999999999976 8999999999999999999999999987653
Q ss_pred ccchHHHHHHHHHHHHHHHhcCC-ceEEEEEeChhHHHHHHHHHhCCCccEEEEeccCC
Q 022960 94 YGNYRREAEDLRAIVQDFCAKGR-VITAIIGHSKGGNAVLLYASKYNDISIVINISGRF 151 (289)
Q Consensus 94 ~~~~~~~~~d~~~~i~~l~~~~~-~~~~l~G~S~Gg~~a~~~a~~~p~v~~~v~~~~~~ 151 (289)
.++..+...-+.++++.| ++ ++++.+|||.|+-.|+.++..+| +.++++++|+-
T Consensus 83 ~~~n~er~~~~~~ll~~l---~i~~~~i~~gHSrGcenal~la~~~~-~~g~~lin~~G 137 (297)
T PF06342_consen 83 QYTNEERQNFVNALLDEL---GIKGKLIFLGHSRGCENALQLAVTHP-LHGLVLINPPG 137 (297)
T ss_pred ccChHHHHHHHHHHHHHc---CCCCceEEEEeccchHHHHHHHhcCc-cceEEEecCCc
Confidence 445566677888888888 44 37899999999999999999996 56999998753
No 89
>PF06821 Ser_hydrolase: Serine hydrolase; InterPro: IPR010662 This family contains a number of hypothetical bacterial proteins of unknown function, which may be cytosolic. The Crystal Structure Of The Yden Gene Product Swiss:P96671 from B. Subtilis has been solved. The structure shows an alpha-beta hydrolase fold suggesting an enzymatic function for these proteins [].; GO: 0016787 hydrolase activity; PDB: 3BDV_B 2QS9_A 1UXO_A.
Probab=99.75 E-value=3.3e-17 Score=116.71 Aligned_cols=155 Identities=16% Similarity=0.135 Sum_probs=98.8
Q ss_pred EEEEcCCCCCCCCcchHHHHHHHHHcCccEEEEccccCCCCCCCccccchHHHHHHHHHHHHHHHhcCCceEEEEEeChh
Q 022960 48 VIVCHGFQSTKDRIPMVNLAAALEREGISAFRFDFSGNGESEGSFLYGNYRREAEDLRAIVQDFCAKGRVITAIIGHSKG 127 (289)
Q Consensus 48 iv~~hG~~~~~~~~~~~~~~~~l~~~G~~v~~~d~~G~G~s~~~~~~~~~~~~~~d~~~~i~~l~~~~~~~~~l~G~S~G 127 (289)
|+++||++++.....+..+.+.|.+. ++|-.+++ ...+++.+...+.+.+..+ .++++|||||+|
T Consensus 1 v~IvhG~~~s~~~HW~~wl~~~l~~~-~~V~~~~~----------~~P~~~~W~~~l~~~i~~~----~~~~ilVaHSLG 65 (171)
T PF06821_consen 1 VLIVHGYGGSPPDHWQPWLERQLENS-VRVEQPDW----------DNPDLDEWVQALDQAIDAI----DEPTILVAHSLG 65 (171)
T ss_dssp EEEE--TTSSTTTSTHHHHHHHHTTS-EEEEEC------------TS--HHHHHHHHHHCCHC-----TTTEEEEEETHH
T ss_pred CEEeCCCCCCCccHHHHHHHHhCCCC-eEEecccc----------CCCCHHHHHHHHHHHHhhc----CCCeEEEEeCHH
Confidence 68999999998765566677777776 77776666 1224566666666665543 235999999999
Q ss_pred HHHHHHHH-HhCCC-ccEEEEeccCCcccccccccccchhHhhhhhcCcccccccccccccccChhhhhhhhccchhhhh
Q 022960 128 GNAVLLYA-SKYND-ISIVINISGRFNLKRGIEGRLGLGYLQRIKQNGFIDVRNKKGKLEYRVTQESLMDRLSTDIHAAC 205 (289)
Q Consensus 128 g~~a~~~a-~~~p~-v~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (289)
+..++.++ ..... |+++++++|+.......... .. ..+.. .
T Consensus 66 c~~~l~~l~~~~~~~v~g~lLVAp~~~~~~~~~~~----~~----------------------------~~f~~-----~ 108 (171)
T PF06821_consen 66 CLTALRWLAEQSQKKVAGALLVAPFDPDDPEPFPP----EL----------------------------DGFTP-----L 108 (171)
T ss_dssp HHHHHHHHHHTCCSSEEEEEEES--SCGCHHCCTC----GG----------------------------CCCTT-----S
T ss_pred HHHHHHHHhhcccccccEEEEEcCCCcccccchhh----hc----------------------------ccccc-----C
Confidence 99999999 44455 99999999974420000000 00 00000 0
Q ss_pred cccccCceEEEEEeCCCCccChhhHHHHHhhCCCcEEEEEcCCCcccccC
Q 022960 206 HMICQDCRVLTIHGTKDKMVPAEDALEFDKFIPNHKLHIIEGADHEFTSH 255 (289)
Q Consensus 206 ~~~~~~~P~l~i~g~~D~~~~~~~~~~~~~~~~~~~~~~~~~~gH~~~~~ 255 (289)
....+.+|.+++.+++|+++|.+.++.+++.+ +++++.++++||+...+
T Consensus 109 p~~~l~~~~~viaS~nDp~vp~~~a~~~A~~l-~a~~~~~~~~GHf~~~~ 157 (171)
T PF06821_consen 109 PRDPLPFPSIVIASDNDPYVPFERAQRLAQRL-GAELIILGGGGHFNAAS 157 (171)
T ss_dssp HCCHHHCCEEEEEETTBSSS-HHHHHHHHHHH-T-EEEEETS-TTSSGGG
T ss_pred cccccCCCeEEEEcCCCCccCHHHHHHHHHHc-CCCeEECCCCCCccccc
Confidence 00122567799999999999999999999998 89999999999996543
No 90
>COG0400 Predicted esterase [General function prediction only]
Probab=99.74 E-value=1.2e-16 Score=116.30 Aligned_cols=173 Identities=21% Similarity=0.289 Sum_probs=115.2
Q ss_pred CCcEEEEEcCCCCCCCCcchHHHHHHHHHcCccEEEEcccc--CCCC-------CCCccccchHHHHHHHHHHHHHHHhc
Q 022960 44 SKQLVIVCHGFQSTKDRIPMVNLAAALEREGISAFRFDFSG--NGES-------EGSFLYGNYRREAEDLRAIVQDFCAK 114 (289)
Q Consensus 44 ~~~~iv~~hG~~~~~~~~~~~~~~~~l~~~G~~v~~~d~~G--~G~s-------~~~~~~~~~~~~~~d~~~~i~~l~~~ 114 (289)
..|+||++||.|++..+ +.++.+.+..+ +.++.+.-+- .|.. .......+.......+.+.++.+.++
T Consensus 17 ~~~~iilLHG~Ggde~~--~~~~~~~~~P~-~~~is~rG~v~~~g~~~~f~~~~~~~~d~edl~~~~~~~~~~l~~~~~~ 93 (207)
T COG0400 17 AAPLLILLHGLGGDELD--LVPLPELILPN-ATLVSPRGPVAENGGPRFFRRYDEGSFDQEDLDLETEKLAEFLEELAEE 93 (207)
T ss_pred CCcEEEEEecCCCChhh--hhhhhhhcCCC-CeEEcCCCCccccCcccceeecCCCccchhhHHHHHHHHHHHHHHHHHH
Confidence 56689999999988754 45555554443 5555442110 0100 01111122222234444444444433
Q ss_pred ---CCceEEEEEeChhHHHHHHHHHhCCC-ccEEEEeccCCcccccccccccchhHhhhhhcCcccccccccccccccCh
Q 022960 115 ---GRVITAIIGHSKGGNAVLLYASKYND-ISIVINISGRFNLKRGIEGRLGLGYLQRIKQNGFIDVRNKKGKLEYRVTQ 190 (289)
Q Consensus 115 ---~~~~~~l~G~S~Gg~~a~~~a~~~p~-v~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (289)
+.++++++|+|.||.+++.+..++|. ++++|+++|.+.........
T Consensus 94 ~gi~~~~ii~~GfSqGA~ial~~~l~~~~~~~~ail~~g~~~~~~~~~~~------------------------------ 143 (207)
T COG0400 94 YGIDSSRIILIGFSQGANIALSLGLTLPGLFAGAILFSGMLPLEPELLPD------------------------------ 143 (207)
T ss_pred hCCChhheEEEecChHHHHHHHHHHhCchhhccchhcCCcCCCCCccccc------------------------------
Confidence 44799999999999999999999999 99999999866543210000
Q ss_pred hhhhhhhccchhhhhcccccCceEEEEEeCCCCccChhhHHHHHhhCC----CcEEEEEcCCCcccccCchHHHHHHHHH
Q 022960 191 ESLMDRLSTDIHAACHMICQDCRVLTIHGTKDKMVPAEDALEFDKFIP----NHKLHIIEGADHEFTSHQDELASLVIQF 266 (289)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~P~l~i~g~~D~~~~~~~~~~~~~~~~----~~~~~~~~~~gH~~~~~~~~~~~~i~~f 266 (289)
....|+++++|+.|+++|...+.++.+.+. +++...++ .||.. +.+..+.+.+|
T Consensus 144 ------------------~~~~pill~hG~~Dpvvp~~~~~~l~~~l~~~g~~v~~~~~~-~GH~i---~~e~~~~~~~w 201 (207)
T COG0400 144 ------------------LAGTPILLSHGTEDPVVPLALAEALAEYLTASGADVEVRWHE-GGHEI---PPEELEAARSW 201 (207)
T ss_pred ------------------cCCCeEEEeccCcCCccCHHHHHHHHHHHHHcCCCEEEEEec-CCCcC---CHHHHHHHHHH
Confidence 116799999999999999998888776663 47888888 79987 56677788889
Q ss_pred HHhhc
Q 022960 267 IKANY 271 (289)
Q Consensus 267 l~~~~ 271 (289)
+....
T Consensus 202 l~~~~ 206 (207)
T COG0400 202 LANTL 206 (207)
T ss_pred HHhcc
Confidence 87653
No 91
>PF05728 UPF0227: Uncharacterised protein family (UPF0227); InterPro: IPR008886 Despite being classed as uncharacterised proteins, the members of this family are almost certainly enzymes in that they contain a domain distantly related to IPR000073 from INTERPRO. One of the members of this family YqiA has been shown to be a esterase []. Other members, which include the Escherichia coli (strain K12) YcfP protein are uncharacterised.
Probab=99.74 E-value=2.6e-16 Score=113.23 Aligned_cols=183 Identities=19% Similarity=0.256 Sum_probs=114.7
Q ss_pred EEEEcCCCCCCCCcchHHHHHHHHHcC--ccEEEEccccCCCCCCCccccchHHHHHHHHHHHHHHHhcCCceEEEEEeC
Q 022960 48 VIVCHGFQSTKDRIPMVNLAAALEREG--ISAFRFDFSGNGESEGSFLYGNYRREAEDLRAIVQDFCAKGRVITAIIGHS 125 (289)
Q Consensus 48 iv~~hG~~~~~~~~~~~~~~~~l~~~G--~~v~~~d~~G~G~s~~~~~~~~~~~~~~d~~~~i~~l~~~~~~~~~l~G~S 125 (289)
|+++||+.++..+.-...+.+.+++.+ ..+.++|++- ......+.+.++++.. ..+.+.|+|.|
T Consensus 2 ilYlHGF~Ssp~S~Ka~~l~~~~~~~~~~~~~~~p~l~~-----------~p~~a~~~l~~~i~~~---~~~~~~liGSS 67 (187)
T PF05728_consen 2 ILYLHGFNSSPQSFKAQALKQYFAEHGPDIQYPCPDLPP-----------FPEEAIAQLEQLIEEL---KPENVVLIGSS 67 (187)
T ss_pred eEEecCCCCCCCCHHHHHHHHHHHHhCCCceEECCCCCc-----------CHHHHHHHHHHHHHhC---CCCCeEEEEEC
Confidence 799999999987744556777787765 4466666651 2344455666666554 44459999999
Q ss_pred hhHHHHHHHHHhCCCccEEEEeccCCcccccccccccchhHhhhhhcCcccccccccccccccChhhhhhhhccchhhhh
Q 022960 126 KGGNAVLLYASKYNDISIVINISGRFNLKRGIEGRLGLGYLQRIKQNGFIDVRNKKGKLEYRVTQESLMDRLSTDIHAAC 205 (289)
Q Consensus 126 ~Gg~~a~~~a~~~p~v~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (289)
|||+.|..++.+++ +++ |+++|.+.....+...++....... ...+.+....+...-......
T Consensus 68 lGG~~A~~La~~~~-~~a-vLiNPav~p~~~l~~~iG~~~~~~~-------------~e~~~~~~~~~~~l~~l~~~~-- 130 (187)
T PF05728_consen 68 LGGFYATYLAERYG-LPA-VLINPAVRPYELLQDYIGEQTNPYT-------------GESYELTEEHIEELKALEVPY-- 130 (187)
T ss_pred hHHHHHHHHHHHhC-CCE-EEEcCCCCHHHHHHHhhCccccCCC-------------CccceechHhhhhcceEeccc--
Confidence 99999999998875 444 8889988766554443332211100 111111212111111101000
Q ss_pred cccccCceEEEEEeCCCCccChhhHHHHHhhCCCcEEEEEcCCCcccccCchHHHHHHHHHH
Q 022960 206 HMICQDCRVLTIHGTKDKMVPAEDALEFDKFIPNHKLHIIEGADHEFTSHQDELASLVIQFI 267 (289)
Q Consensus 206 ~~~~~~~P~l~i~g~~D~~~~~~~~~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~i~~fl 267 (289)
..-..+++++.++.|++++.+.+. +.+.++..++.+|++|.+. +-++....|.+|+
T Consensus 131 --~~~~~~~lvll~~~DEvLd~~~a~---~~~~~~~~~i~~ggdH~f~-~f~~~l~~i~~f~ 186 (187)
T PF05728_consen 131 --PTNPERYLVLLQTGDEVLDYREAV---AKYRGCAQIIEEGGDHSFQ-DFEEYLPQIIAFL 186 (187)
T ss_pred --cCCCccEEEEEecCCcccCHHHHH---HHhcCceEEEEeCCCCCCc-cHHHHHHHHHHhh
Confidence 122579999999999999985543 4445566667788899874 3467777888886
No 92
>COG4757 Predicted alpha/beta hydrolase [General function prediction only]
Probab=99.70 E-value=2.3e-16 Score=112.62 Aligned_cols=238 Identities=17% Similarity=0.138 Sum_probs=140.5
Q ss_pred EEeeCCCCceEEEEEeecC-CCcEEEEEcCCCCCCCCcchHHHHHHHHHcCccEEEEccccCCCCCCCcc---ccchHHH
Q 022960 25 VVIPNSHGEKLVGILHETG-SKQLVIVCHGFQSTKDRIPMVNLAAALEREGISAFRFDFSGNGESEGSFL---YGNYRRE 100 (289)
Q Consensus 25 ~~~~~~~g~~l~~~~~~~~-~~~~iv~~hG~~~~~~~~~~~~~~~~l~~~G~~v~~~d~~G~G~s~~~~~---~~~~~~~ 100 (289)
..++..||..+.+..++.. +.+-.+++.|..+... .+|+.++..++++||.|+++|+||.|.|..... ...+.++
T Consensus 8 ~~l~~~DG~~l~~~~~pA~~~~~g~~~va~a~Gv~~-~fYRrfA~~a~~~Gf~Vlt~dyRG~g~S~p~~~~~~~~~~~Dw 86 (281)
T COG4757 8 AHLPAPDGYSLPGQRFPADGKASGRLVVAGATGVGQ-YFYRRFAAAAAKAGFEVLTFDYRGIGQSRPASLSGSQWRYLDW 86 (281)
T ss_pred cccccCCCccCccccccCCCCCCCcEEecccCCcch-hHhHHHHHHhhccCceEEEEecccccCCCccccccCccchhhh
Confidence 6688899999988777654 4443455555555544 479999999999999999999999999986543 2566666
Q ss_pred H-HHHHHHHHHHHhc-CCceEEEEEeChhHHHHHHHHHhCCCccEEEEeccCCcccccccccccch----------hHhh
Q 022960 101 A-EDLRAIVQDFCAK-GRVITAIIGHSKGGNAVLLYASKYNDISIVINISGRFNLKRGIEGRLGLG----------YLQR 168 (289)
Q Consensus 101 ~-~d~~~~i~~l~~~-~~~~~~l~G~S~Gg~~a~~~a~~~p~v~~~v~~~~~~~~~~~~~~~~~~~----------~~~~ 168 (289)
+ .|+.++++.++.. ...+...||||+||.+.-.+. +++.+.+....+....+...+....... ....
T Consensus 87 A~~D~~aal~~~~~~~~~~P~y~vgHS~GGqa~gL~~-~~~k~~a~~vfG~gagwsg~m~~~~~l~~~~l~~lv~p~lt~ 165 (281)
T COG4757 87 ARLDFPAALAALKKALPGHPLYFVGHSFGGQALGLLG-QHPKYAAFAVFGSGAGWSGWMGLRERLGAVLLWNLVGPPLTF 165 (281)
T ss_pred hhcchHHHHHHHHhhCCCCceEEeeccccceeecccc-cCcccceeeEeccccccccchhhhhcccceeeccccccchhh
Confidence 5 7999999999764 344789999999998866543 3444333333332222211111100000 0000
Q ss_pred hhhcCcccccccccccccccChhhhhhhhc-----------cchhhhhcccccCceEEEEEeCCCCccChhhHHHHHhhC
Q 022960 169 IKQNGFIDVRNKKGKLEYRVTQESLMDRLS-----------TDIHAACHMICQDCRVLTIHGTKDKMVPAEDALEFDKFI 237 (289)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~P~l~i~g~~D~~~~~~~~~~~~~~~ 237 (289)
+.. .+....--.+................ ....+... .+++|++++...+|+.+|+...+.+.+..
T Consensus 166 w~g-~~p~~l~G~G~d~p~~v~RdW~RwcR~p~y~fddp~~~~~~q~ya--aVrtPi~~~~~~DD~w~P~As~d~f~~~y 242 (281)
T COG4757 166 WKG-YMPKDLLGLGSDLPGTVMRDWARWCRHPRYYFDDPAMRNYRQVYA--AVRTPITFSRALDDPWAPPASRDAFASFY 242 (281)
T ss_pred ccc-cCcHhhcCCCccCcchHHHHHHHHhcCccccccChhHhHHHHHHH--HhcCceeeeccCCCCcCCHHHHHHHHHhh
Confidence 000 00000000000000000000000000 00111122 35899999999999999999999999999
Q ss_pred CCcEE--EEEcC----CCcc-cccCc-hHHHHHHHHHH
Q 022960 238 PNHKL--HIIEG----ADHE-FTSHQ-DELASLVIQFI 267 (289)
Q Consensus 238 ~~~~~--~~~~~----~gH~-~~~~~-~~~~~~i~~fl 267 (289)
+|+.+ ..++. -||+ .+.++ |.+.+++.+|+
T Consensus 243 ~nApl~~~~~~~~~~~lGH~gyfR~~~Ealwk~~L~w~ 280 (281)
T COG4757 243 RNAPLEMRDLPRAEGPLGHMGYFREPFEALWKEMLGWF 280 (281)
T ss_pred hcCcccceecCcccCcccchhhhccchHHHHHHHHHhh
Confidence 88644 44443 5898 44444 77888888776
No 93
>PF09752 DUF2048: Uncharacterized conserved protein (DUF2048); InterPro: IPR019149 This family of proteins has no known function.
Probab=99.70 E-value=3e-15 Score=115.25 Aligned_cols=222 Identities=17% Similarity=0.225 Sum_probs=137.5
Q ss_pred CCcEEEEEcCCCCCCCCcchHH-HHHHHHHcCccEEEEccccCCCCCCCcccc----ch-------HHHHHHHHHHHHHH
Q 022960 44 SKQLVIVCHGFQSTKDRIPMVN-LAAALEREGISAFRFDFSGNGESEGSFLYG----NY-------RREAEDLRAIVQDF 111 (289)
Q Consensus 44 ~~~~iv~~hG~~~~~~~~~~~~-~~~~l~~~G~~v~~~d~~G~G~s~~~~~~~----~~-------~~~~~d~~~~i~~l 111 (289)
.+|.+|.++|.|.+.-. .-.. ++..|.+.|+..+.+..|.||...+..... .. ...+.+...+++|+
T Consensus 91 ~rp~~IhLagTGDh~f~-rR~~l~a~pLl~~gi~s~~le~Pyyg~RkP~~Q~~s~l~~VsDl~~~g~~~i~E~~~Ll~Wl 169 (348)
T PF09752_consen 91 YRPVCIHLAGTGDHGFW-RRRRLMARPLLKEGIASLILENPYYGQRKPKDQRRSSLRNVSDLFVMGRATILESRALLHWL 169 (348)
T ss_pred CCceEEEecCCCccchh-hhhhhhhhHHHHcCcceEEEecccccccChhHhhcccccchhHHHHHHhHHHHHHHHHHHHH
Confidence 57899999999987521 1122 478888889999999999999776432211 11 23357888999999
Q ss_pred HhcCCceEEEEEeChhHHHHHHHHHhCCC-ccEEEEeccCCcc---ccccc-ccccchhHh-hhhhcCccccccccccc-
Q 022960 112 CAKGRVITAIIGHSKGGNAVLLYASKYND-ISIVINISGRFNL---KRGIE-GRLGLGYLQ-RIKQNGFIDVRNKKGKL- 184 (289)
Q Consensus 112 ~~~~~~~~~l~G~S~Gg~~a~~~a~~~p~-v~~~v~~~~~~~~---~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~- 184 (289)
++++..++.+.|.||||.+|...+...|. +..+-++++.... ..... .......+. .+....+.+........
T Consensus 170 ~~~G~~~~g~~G~SmGG~~A~laa~~~p~pv~~vp~ls~~sAs~vFt~Gvls~~i~W~~L~~q~~~~~~~~~~~~~~~~~ 249 (348)
T PF09752_consen 170 EREGYGPLGLTGISMGGHMAALAASNWPRPVALVPCLSWSSASVVFTEGVLSNSINWDALEKQFEDTVYEEEISDIPAQN 249 (348)
T ss_pred HhcCCCceEEEEechhHhhHHhhhhcCCCceeEEEeecccCCCcchhhhhhhcCCCHHHHHHHhcccchhhhhcccccCc
Confidence 99999999999999999999999999998 6655555543221 11111 111111111 11111111110000000
Q ss_pred ---------ccccChhhhhhhhcc--chhhhhccc---ccCceEEEEEeCCCCccChhhHHHHHhhCCCcEEEEEcCCCc
Q 022960 185 ---------EYRVTQESLMDRLST--DIHAACHMI---CQDCRVLTIHGTKDKMVPAEDALEFDKFIPNHKLHIIEGADH 250 (289)
Q Consensus 185 ---------~~~~~~~~~~~~~~~--~~~~~~~~~---~~~~P~l~i~g~~D~~~~~~~~~~~~~~~~~~~~~~~~~~gH 250 (289)
......+... .... +........ .-.-.+.++.+++|..||......+.+.+|++++.++++ ||
T Consensus 250 ~~~~~~~~~~~~~~~Ea~~-~m~~~md~~T~l~nf~~P~dp~~ii~V~A~~DaYVPr~~v~~Lq~~WPGsEvR~l~g-GH 327 (348)
T PF09752_consen 250 KSLPLDSMEERRRDREALR-FMRGVMDSFTHLTNFPVPVDPSAIIFVAAKNDAYVPRHGVLSLQEIWPGSEVRYLPG-GH 327 (348)
T ss_pred ccccchhhccccchHHHHH-HHHHHHHhhccccccCCCCCCCcEEEEEecCceEechhhcchHHHhCCCCeEEEecC-Cc
Confidence 0000111111 1000 000001111 113358899999999999999999999999999999997 99
Q ss_pred c--cccCchHHHHHHHHHHH
Q 022960 251 E--FTSHQDELASLVIQFIK 268 (289)
Q Consensus 251 ~--~~~~~~~~~~~i~~fl~ 268 (289)
. ++.+.+.+.+.|.+-++
T Consensus 328 VsA~L~~q~~fR~AI~Daf~ 347 (348)
T PF09752_consen 328 VSAYLLHQEAFRQAIYDAFE 347 (348)
T ss_pred EEEeeechHHHHHHHHHHhh
Confidence 8 55777888888887664
No 94
>COG2021 MET2 Homoserine acetyltransferase [Amino acid transport and metabolism]
Probab=99.69 E-value=3.3e-15 Score=115.10 Aligned_cols=235 Identities=19% Similarity=0.234 Sum_probs=135.8
Q ss_pred CceEEEEEeec---CCCcEEEEEcCCCCCCCC---------cchHHHH---HHHHHcCccEEEEccccCC-CCCCCc---
Q 022960 32 GEKLVGILHET---GSKQLVIVCHGFQSTKDR---------IPMVNLA---AALEREGISAFRFDFSGNG-ESEGSF--- 92 (289)
Q Consensus 32 g~~l~~~~~~~---~~~~~iv~~hG~~~~~~~---------~~~~~~~---~~l~~~G~~v~~~d~~G~G-~s~~~~--- 92 (289)
+..+.|..++. ....+|+++|++.++... .+|..+. +.+.-..|.||++|..|.+ .|+++.
T Consensus 35 ~~~vay~T~Gtln~~~~NaVli~HaLtG~~h~~~~~~~~~~GWW~~liGpG~~iDt~r~fvIc~NvlG~c~GStgP~s~~ 114 (368)
T COG2021 35 DARVAYETYGTLNAEKDNAVLICHALTGDSHAAGTADDGEKGWWDDLIGPGKPIDTERFFVICTNVLGGCKGSTGPSSIN 114 (368)
T ss_pred CcEEEEEecccccccCCceEEEeccccCcccccccCCCCCCccHHHhcCCCCCCCccceEEEEecCCCCCCCCCCCCCcC
Confidence 34555554442 246799999999986543 1344433 1233334899999999876 343322
Q ss_pred ----------cccchHHHHHHHHHHHHHHHhcCCceEE-EEEeChhHHHHHHHHHhCCC-ccEEEEeccCCccccccc--
Q 022960 93 ----------LYGNYRREAEDLRAIVQDFCAKGRVITA-IIGHSKGGNAVLLYASKYND-ISIVINISGRFNLKRGIE-- 158 (289)
Q Consensus 93 ----------~~~~~~~~~~d~~~~i~~l~~~~~~~~~-l~G~S~Gg~~a~~~a~~~p~-v~~~v~~~~~~~~~~~~~-- 158 (289)
...++.+++.--..+++.| +++++. +||-||||+.|+.++..+|+ |..+|.+++.........
T Consensus 115 p~g~~yg~~FP~~ti~D~V~aq~~ll~~L---GI~~l~avvGgSmGGMqaleWa~~yPd~V~~~i~ia~~~r~s~~~ia~ 191 (368)
T COG2021 115 PGGKPYGSDFPVITIRDMVRAQRLLLDAL---GIKKLAAVVGGSMGGMQALEWAIRYPDRVRRAIPIATAARLSAQNIAF 191 (368)
T ss_pred CCCCccccCCCcccHHHHHHHHHHHHHhc---CcceEeeeeccChHHHHHHHHHHhChHHHhhhheecccccCCHHHHHH
Confidence 1223344444445555666 999985 99999999999999999999 999888887443221000
Q ss_pred -c-----------c------------ccchhHhhhhh----------cCccccccccccc--ccccChhhhhh-------
Q 022960 159 -G-----------R------------LGLGYLQRIKQ----------NGFIDVRNKKGKL--EYRVTQESLMD------- 195 (289)
Q Consensus 159 -~-----------~------------~~~~~~~~~~~----------~~~~~~~~~~~~~--~~~~~~~~~~~------- 195 (289)
. + -+-...+.+.. ..|.......... ...+..+++.+
T Consensus 192 ~~~~r~AI~~DP~~n~G~Y~~~~~P~~GL~~AR~l~~ltYrS~~~~~~rF~r~~~~~~~~~~~~~f~vESYL~~qg~kf~ 271 (368)
T COG2021 192 NEVQRQAIEADPDWNGGDYYEGTQPERGLRLARMLAHLTYRSEEELDERFGRRLQADPLRGGGVRFAVESYLDYQGDKFV 271 (368)
T ss_pred HHHHHHHHHhCCCccCCCccCCCCcchhHHHHHHHHHHHccCHHHHHHHhcccccccccCCCchhHHHHHHHHHHHHHHH
Confidence 0 0 00000000000 0000000000000 00111111111
Q ss_pred -hhccchh-------------hh-----hcccccCceEEEEEeCCCCccChhhHHHHHhhCCCcE-EEEEc-CCCcc-cc
Q 022960 196 -RLSTDIH-------------AA-----CHMICQDCRVLTIHGTKDKMVPAEDALEFDKFIPNHK-LHIIE-GADHE-FT 253 (289)
Q Consensus 196 -~~~~~~~-------------~~-----~~~~~~~~P~l~i~g~~D~~~~~~~~~~~~~~~~~~~-~~~~~-~~gH~-~~ 253 (289)
.+..+.. .. ....++++|+|++.-+.|.+.|++..+++.+.++.+. ++.++ ..||. |+
T Consensus 272 ~rfDaNsYL~lt~ald~~D~s~~~~~l~~al~~i~~~~lv~gi~sD~lfp~~~~~~~~~~L~~~~~~~~i~S~~GHDaFL 351 (368)
T COG2021 272 ARFDANSYLYLTRALDYHDVSRGRGDLTAALARIKAPVLVVGITSDWLFPPELQRALAEALPAAGALREIDSPYGHDAFL 351 (368)
T ss_pred hccCcchHHHHHHHHHhcCCCCCcCcHHHHHhcCccCEEEEEecccccCCHHHHHHHHHhccccCceEEecCCCCchhhh
Confidence 1110000 00 0012468999999999999999999999999998766 65654 47998 56
Q ss_pred cCchHHHHHHHHHHHh
Q 022960 254 SHQDELASLVIQFIKA 269 (289)
Q Consensus 254 ~~~~~~~~~i~~fl~~ 269 (289)
.+.+.+...|..||+.
T Consensus 352 ~e~~~~~~~i~~fL~~ 367 (368)
T COG2021 352 VESEAVGPLIRKFLAL 367 (368)
T ss_pred cchhhhhHHHHHHhhc
Confidence 7777888999999864
No 95
>PF02129 Peptidase_S15: X-Pro dipeptidyl-peptidase (S15 family); InterPro: IPR000383 This entry represents a domain found peptidases Xaa-Pro dipeptidyl-peptidase and glutaryl-7-aminocephalosporanic-acid acylase, which belong to MEROPS peptidase families S15 and S45 respectively []. It is also found in hydrolases from the CocE/NonD family. Cocaine esterase (CocE) hydrolyzes cocaine endowing the bacteria with the ability to utilise cocaine as a sole source of carbon and energy []. ; GO: 0004177 aminopeptidase activity, 0006508 proteolysis; PDB: 1LNS_A 3PUI_A 3PUH_B 1JU3_A 3I2I_A 3I2G_A 1JU4_A 3I2K_A 3IDA_A 3I2H_A ....
Probab=99.69 E-value=8.1e-16 Score=119.51 Aligned_cols=123 Identities=19% Similarity=0.194 Sum_probs=91.6
Q ss_pred CCceEEEEEeec--C---CCcEEEEEcCCCCCCCCcchHH---------HHHHHHHcCccEEEEccccCCCCCCCccccc
Q 022960 31 HGEKLVGILHET--G---SKQLVIVCHGFQSTKDRIPMVN---------LAAALEREGISAFRFDFSGNGESEGSFLYGN 96 (289)
Q Consensus 31 ~g~~l~~~~~~~--~---~~~~iv~~hG~~~~~~~~~~~~---------~~~~l~~~G~~v~~~d~~G~G~s~~~~~~~~ 96 (289)
||++|.+.++.| . +.|+||..|+++..... .... ....++++||.|+..|.||.|.|.+.....
T Consensus 1 DGv~L~adv~~P~~~~~~~~P~il~~tpY~~~~~~-~~~~~~~~~~~~~~~~~~~~~GY~vV~~D~RG~g~S~G~~~~~- 78 (272)
T PF02129_consen 1 DGVRLAADVYRPGADGGGPFPVILTRTPYGKGDQT-ASDLAGANPGPPSARRPFAERGYAVVVQDVRGTGGSEGEFDPM- 78 (272)
T ss_dssp TS-EEEEEEEEE--TTSSSEEEEEEEESSTCTC-H-HHHHHTTCHHSHGGGHHHHHTT-EEEEEE-TTSTTS-S-B-TT-
T ss_pred CCCEEEEEEEecCCCCCCcccEEEEccCcCCCCCc-ccchhhhhcccchhHHHHHhCCCEEEEECCcccccCCCccccC-
Confidence 788999988877 2 56899999999965311 0111 112389999999999999999999887554
Q ss_pred hHHHHHHHHHHHHHHHhcC--CceEEEEEeChhHHHHHHHHHhCCC-ccEEEEeccCCcccc
Q 022960 97 YRREAEDLRAIVQDFCAKG--RVITAIIGHSKGGNAVLLYASKYND-ISIVINISGRFNLKR 155 (289)
Q Consensus 97 ~~~~~~d~~~~i~~l~~~~--~~~~~l~G~S~Gg~~a~~~a~~~p~-v~~~v~~~~~~~~~~ 155 (289)
.....+|..++|+++..+. ..+|.++|.|++|..++.+|+..|. +++++...+..+...
T Consensus 79 ~~~e~~D~~d~I~W~~~Qpws~G~VGm~G~SY~G~~q~~~A~~~~p~LkAi~p~~~~~d~~~ 140 (272)
T PF02129_consen 79 SPNEAQDGYDTIEWIAAQPWSNGKVGMYGISYGGFTQWAAAARRPPHLKAIVPQSGWSDLYR 140 (272)
T ss_dssp SHHHHHHHHHHHHHHHHCTTEEEEEEEEEETHHHHHHHHHHTTT-TTEEEEEEESE-SBTCC
T ss_pred ChhHHHHHHHHHHHHHhCCCCCCeEEeeccCHHHHHHHHHHhcCCCCceEEEecccCCcccc
Confidence 5778899999999998883 3489999999999999999996666 999999988777654
No 96
>PF08538 DUF1749: Protein of unknown function (DUF1749); InterPro: IPR013744 This is a plant and fungal family of unknown function. This family contains many hypothetical proteins. ; PDB: 2Q0X_B.
Probab=99.69 E-value=1.7e-15 Score=114.91 Aligned_cols=222 Identities=20% Similarity=0.208 Sum_probs=89.7
Q ss_pred CCcEEEEEcCCCCCCCC-cchHHHHHHHHHcCccEEEEccccCCCCCCCccccchHHHHHHHHHHHHHHHhc-----CCc
Q 022960 44 SKQLVIVCHGFQSTKDR-IPMVNLAAALEREGISAFRFDFSGNGESEGSFLYGNYRREAEDLRAIVQDFCAK-----GRV 117 (289)
Q Consensus 44 ~~~~iv~~hG~~~~~~~-~~~~~~~~~l~~~G~~v~~~d~~G~G~s~~~~~~~~~~~~~~d~~~~i~~l~~~-----~~~ 117 (289)
....||||.|++..... .+...+++.|.+.||.|+-+.++... .-....+++..++|+.+++++|+.. +.+
T Consensus 32 ~~~~llfIGGLtDGl~tvpY~~~La~aL~~~~wsl~q~~LsSSy---~G~G~~SL~~D~~eI~~~v~ylr~~~~g~~~~~ 108 (303)
T PF08538_consen 32 APNALLFIGGLTDGLLTVPYLPDLAEALEETGWSLFQVQLSSSY---SGWGTSSLDRDVEEIAQLVEYLRSEKGGHFGRE 108 (303)
T ss_dssp SSSEEEEE--TT--TT-STCHHHHHHHHT-TT-EEEEE--GGGB---TTS-S--HHHHHHHHHHHHHHHHHHS------S
T ss_pred CCcEEEEECCCCCCCCCCchHHHHHHHhccCCeEEEEEEecCcc---CCcCcchhhhHHHHHHHHHHHHHHhhccccCCc
Confidence 56689999999875443 46788999998789999999876311 1122346788899999999999888 467
Q ss_pred eEEEEEeChhHHHHHHHHHhCC-----C-ccEEEEeccCCccccccccccc----ch---hHhhhhhcCcc-cccc-ccc
Q 022960 118 ITAIIGHSKGGNAVLLYASKYN-----D-ISIVINISGRFNLKRGIEGRLG----LG---YLQRIKQNGFI-DVRN-KKG 182 (289)
Q Consensus 118 ~~~l~G~S~Gg~~a~~~a~~~p-----~-v~~~v~~~~~~~~~~~~~~~~~----~~---~~~~~~~~~~~-~~~~-~~~ 182 (289)
+|+|+|||.|+.-++.|+.... . |+++|+-+|..+........-. .. ..+.+...+-. .... ...
T Consensus 109 kIVLmGHSTGcQdvl~Yl~~~~~~~~~~~VdG~ILQApVSDREa~~~~~~~~~~~~~~v~~A~~~i~~g~~~~~lp~~~~ 188 (303)
T PF08538_consen 109 KIVLMGHSTGCQDVLHYLSSPNPSPSRPPVDGAILQAPVSDREAILNFLGEREAYEELVALAKELIAEGKGDEILPREFT 188 (303)
T ss_dssp -EEEEEECCHHHHHHHHHHH-TT---CCCEEEEEEEEE---TTSTTTSHHH---HHHHHHHHHHHHHCT-TT-GG----G
T ss_pred cEEEEecCCCcHHHHHHHhccCccccccceEEEEEeCCCCChhHhhhcccchHHHHHHHHHHHHHHHcCCCCceeecccc
Confidence 9999999999999999988752 2 9999999997765432221111 11 11111111111 1100 000
Q ss_pred cc---ccccChhhhhh---------hhccchhhh---hcccccCceEEEEEeCCCCccChhhH-HHHHhhCCC-------
Q 022960 183 KL---EYRVTQESLMD---------RLSTDIHAA---CHMICQDCRVLTIHGTKDKMVPAEDA-LEFDKFIPN------- 239 (289)
Q Consensus 183 ~~---~~~~~~~~~~~---------~~~~~~~~~---~~~~~~~~P~l~i~g~~D~~~~~~~~-~~~~~~~~~------- 239 (289)
.. ...++...+.. .+..+.... ...-++.+|+|++.+++|+.+|...- +.+.+++..
T Consensus 189 ~~~~~~~PiTA~Rf~SL~s~~gdDD~FSSDL~de~l~~tfG~v~~plLvl~Sg~DEyvP~~vdk~~Ll~rw~~a~~~~~~ 268 (303)
T PF08538_consen 189 PLVFYDTPITAYRFLSLASPGGDDDYFSSDLSDERLKKTFGKVSKPLLVLYSGKDEYVPPWVDKEALLERWKAATNPKIW 268 (303)
T ss_dssp GTTT-SS---HHHHHT-S-SSHHHHTHHHHHTT-HHHHTGGG--S-EEEEEE--TT------------------------
T ss_pred ccccCCCcccHHHHHhccCCCCcccccCCCCCHHHHHHHhccCCCceEEEecCCCceecccccccccccccccccccccc
Confidence 00 11222222221 111111111 11114578999999999999987542 334444432
Q ss_pred -cEEEEEcCCCcccccCc-----hHHHHHHHHHHH
Q 022960 240 -HKLHIIEGADHEFTSHQ-----DELASLVIQFIK 268 (289)
Q Consensus 240 -~~~~~~~~~gH~~~~~~-----~~~~~~i~~fl~ 268 (289)
..-.++||++|.+-... +++.+.+..||+
T Consensus 269 s~~S~iI~GA~H~~~~~~~~~~~~~l~~rV~~fl~ 303 (303)
T PF08538_consen 269 SPLSGIIPGASHNVSGPSQAEAREWLVERVVKFLK 303 (303)
T ss_dssp -----------------------------------
T ss_pred cccccccccccccccccccccccccccccccccCC
Confidence 23458999999975322 357777888774
No 97
>TIGR01849 PHB_depoly_PhaZ polyhydroxyalkanoate depolymerase, intracellular. This model represents an intracellular depolymerase for polyhydroxyalkanoate (PHA), a carbon and energy storing polyester that accumulates in granules in many bacterial species when carbon sources are abundant but other nutrients are limiting. This family is named for PHAs generally, rather than polyhydroxybutyrate (PHB) specificially as in Ralstonia eutropha H16, to avoid overcalling chemical specificity in other species. Note that this family lacks the classic GXSXG lipase motif and instead shows weak similarity to some
Probab=99.69 E-value=5e-15 Score=118.22 Aligned_cols=218 Identities=15% Similarity=0.168 Sum_probs=136.3
Q ss_pred cEEEEEcCCCCCCCCcchHHHHHHHHHcCccEEEEccccCCCCCCCccccchHHHHHHHHHHHHHHHhcCCceEEEEEeC
Q 022960 46 QLVIVCHGFQSTKDRIPMVNLAAALEREGISAFRFDFSGNGESEGSFLYGNYRREAEDLRAIVQDFCAKGRVITAIIGHS 125 (289)
Q Consensus 46 ~~iv~~hG~~~~~~~~~~~~~~~~l~~~G~~v~~~d~~G~G~s~~~~~~~~~~~~~~d~~~~i~~l~~~~~~~~~l~G~S 125 (289)
|+||++..+.++... +.+.+.+.|.. |+.|+.+|+.--+..+......+++++++.+.++++++ +.+ ++++|+|
T Consensus 103 ~pvLiV~Pl~g~~~~-L~RS~V~~Ll~-g~dVYl~DW~~p~~vp~~~~~f~ldDYi~~l~~~i~~~---G~~-v~l~GvC 176 (406)
T TIGR01849 103 PAVLIVAPMSGHYAT-LLRSTVEALLP-DHDVYITDWVNARMVPLSAGKFDLEDYIDYLIEFIRFL---GPD-IHVIAVC 176 (406)
T ss_pred CcEEEEcCCchHHHH-HHHHHHHHHhC-CCcEEEEeCCCCCCCchhcCCCCHHHHHHHHHHHHHHh---CCC-CcEEEEc
Confidence 799999998876543 45778888888 99999999987775543344557788887888888777 666 9999999
Q ss_pred hhHHHHHHHHHhC-----CC-ccEEEEeccCCccccc--ccccc-c---chhHhhhh-h--------------------c
Q 022960 126 KGGNAVLLYASKY-----ND-ISIVINISGRFNLKRG--IEGRL-G---LGYLQRIK-Q--------------------N 172 (289)
Q Consensus 126 ~Gg~~a~~~a~~~-----p~-v~~~v~~~~~~~~~~~--~~~~~-~---~~~~~~~~-~--------------------~ 172 (289)
+||..++.+++.. |. ++++++++++.+.... ....+ . -.+..... . .
T Consensus 177 qgG~~~laa~Al~a~~~~p~~~~sltlm~~PID~~~~p~~v~~~a~~~~i~~~~~~~i~~vp~~~~g~gr~v~PG~~~~~ 256 (406)
T TIGR01849 177 QPAVPVLAAVALMAENEPPAQPRSMTLMGGPIDARASPTVVNELAREKPIEWFQHNVIMRVPFPYPGAGRLVYPGFLQLA 256 (406)
T ss_pred hhhHHHHHHHHHHHhcCCCCCcceEEEEecCccCCCCCchHHHHhhcccHHHHHHHhhhccCccccCCCCcccCHHHHHH
Confidence 9999977766654 55 9999999998886532 11110 0 00111000 0 0
Q ss_pred Ccccccccc--------------cccc---------------cccChhhhhhhhccchhhh-------------hccccc
Q 022960 173 GFIDVRNKK--------------GKLE---------------YRVTQESLMDRLSTDIHAA-------------CHMICQ 210 (289)
Q Consensus 173 ~~~~~~~~~--------------~~~~---------------~~~~~~~~~~~~~~~~~~~-------------~~~~~~ 210 (289)
.|....... +... .....+.+.+.+..-+... ....+|
T Consensus 257 ~F~~mnp~r~~~~~~~~~~~l~~gd~~~~~~~~~f~~~y~d~~dlpge~y~~~v~~vf~~n~L~~G~l~v~G~~Vdl~~I 336 (406)
T TIGR01849 257 GFISMNLDRHTKAHSDFFLHLVKGDGQEADKHRIFYDEYLAVMDMTAEFYLQTIDVVFQQFLLPQGKFIVEGKRVDPGAI 336 (406)
T ss_pred HHHHcCcchHHHHHHHHHHHHhcCCcchHHHHHHHHHHhhhccCCcHHHHHHHHHHHHHhCCccCCcEEECCEEecHHHC
Confidence 000000000 0000 0000001111110000000 001156
Q ss_pred C-ceEEEEEeCCCCccChhhHHHHHhhC---C--CcEEEEEcCCCccc-cc---CchHHHHHHHHHHHh
Q 022960 211 D-CRVLTIHGTKDKMVPAEDALEFDKFI---P--NHKLHIIEGADHEF-TS---HQDELASLVIQFIKA 269 (289)
Q Consensus 211 ~-~P~l~i~g~~D~~~~~~~~~~~~~~~---~--~~~~~~~~~~gH~~-~~---~~~~~~~~i~~fl~~ 269 (289)
+ +|+|.+.|++|.++|+.+++.+.+.+ + +.+.+..+++||.- +. -.+++...|.+||.+
T Consensus 337 ~~~pll~V~ge~D~I~p~~qt~aa~~l~~~~~s~~k~~~~~~~~GH~Gvf~G~r~~~~i~P~i~~wl~~ 405 (406)
T TIGR01849 337 TRVALLTVEGENDDISGLGQTKAALRLCTGIPEDMKRHHLQPGVGHYGVFSGSRFREEIYPLVREFIRR 405 (406)
T ss_pred cccceEEEeccCCCcCCHHHhHHHHHHhhcCChhhceEeecCCCCeEEEeeChhhhhhhchHHHHHHHh
Confidence 7 99999999999999999999999885 4 34677777899993 32 236789999999975
No 98
>TIGR01839 PHA_synth_II poly(R)-hydroxyalkanoic acid synthase, class II. This model represents the class II subfamily of poly(R)-hydroxyalkanoate synthases, which polymerizes hydroxyacyl-CoAs, typically with six to fourteen carbons in the hydroxyacyl backbone into aliphatic esters termed poly(R)-hydroxyalkanoic acids. These polymers accumulate as carbon and energy storage inclusions in many species and can amount to 90 percent of the dry weight of cell.
Probab=99.68 E-value=3.6e-15 Score=122.54 Aligned_cols=106 Identities=8% Similarity=0.071 Sum_probs=85.9
Q ss_pred CCcEEEEEcCCCCCCCCcch-----HHHHHHHHHcCccEEEEccccCCCCCCCccccchHHHHHHHHHHHHHHHhc-CCc
Q 022960 44 SKQLVIVCHGFQSTKDRIPM-----VNLAAALEREGISAFRFDFSGNGESEGSFLYGNYRREAEDLRAIVQDFCAK-GRV 117 (289)
Q Consensus 44 ~~~~iv~~hG~~~~~~~~~~-----~~~~~~l~~~G~~v~~~d~~G~G~s~~~~~~~~~~~~~~d~~~~i~~l~~~-~~~ 117 (289)
.+.+||+++++.... +.+ +.+++.|.++|+.|+.+|+++-+.... ..+++++++.+.++++.+++. +.+
T Consensus 214 ~~~PLLIVPp~INK~--YIlDL~P~~SlVr~lv~qG~~VflIsW~nP~~~~r---~~~ldDYv~~i~~Ald~V~~~tG~~ 288 (560)
T TIGR01839 214 HARPLLVVPPQINKF--YIFDLSPEKSFVQYCLKNQLQVFIISWRNPDKAHR---EWGLSTYVDALKEAVDAVRAITGSR 288 (560)
T ss_pred CCCcEEEechhhhhh--heeecCCcchHHHHHHHcCCeEEEEeCCCCChhhc---CCCHHHHHHHHHHHHHHHHHhcCCC
Confidence 457899999987443 223 679999999999999999998665542 346677778899999998777 677
Q ss_pred eEEEEEeChhHHHHHH----HHHhCCC--ccEEEEeccCCccc
Q 022960 118 ITAIIGHSKGGNAVLL----YASKYND--ISIVINISGRFNLK 154 (289)
Q Consensus 118 ~~~l~G~S~Gg~~a~~----~a~~~p~--v~~~v~~~~~~~~~ 154 (289)
++.++|+|+||.+++. +++++++ |++++++.++.++.
T Consensus 289 ~vnl~GyC~GGtl~a~~~a~~aA~~~~~~V~sltllatplDf~ 331 (560)
T TIGR01839 289 DLNLLGACAGGLTCAALVGHLQALGQLRKVNSLTYLVSLLDST 331 (560)
T ss_pred CeeEEEECcchHHHHHHHHHHHhcCCCCceeeEEeeecccccC
Confidence 8999999999999987 7777774 99999999888765
No 99
>KOG3043 consensus Predicted hydrolase related to dienelactone hydrolase [General function prediction only]
Probab=99.67 E-value=2.6e-15 Score=106.99 Aligned_cols=186 Identities=17% Similarity=0.203 Sum_probs=133.1
Q ss_pred EEEEEeecC-CCcEEEEEcCCCCCCCCcchHHHHHHHHHcCccEEEEccc-cCCCCCCCc--------cccchHHHHHHH
Q 022960 35 LVGILHETG-SKQLVIVCHGFQSTKDRIPMVNLAAALEREGISAFRFDFS-GNGESEGSF--------LYGNYRREAEDL 104 (289)
Q Consensus 35 l~~~~~~~~-~~~~iv~~hG~~~~~~~~~~~~~~~~l~~~G~~v~~~d~~-G~G~s~~~~--------~~~~~~~~~~d~ 104 (289)
+..|+.+.. ++..||++--..|.... -.+..++.++..||.|+++|+- |--.+.... ...+.+....++
T Consensus 28 ldaYv~gs~~~~~~li~i~DvfG~~~~-n~r~~Adk~A~~Gy~v~vPD~~~Gdp~~~~~~~~~~~~w~~~~~~~~~~~~i 106 (242)
T KOG3043|consen 28 LDAYVVGSTSSKKVLIVIQDVFGFQFP-NTREGADKVALNGYTVLVPDFFRGDPWSPSLQKSERPEWMKGHSPPKIWKDI 106 (242)
T ss_pred eeEEEecCCCCCeEEEEEEeeeccccH-HHHHHHHHHhcCCcEEEcchhhcCCCCCCCCChhhhHHHHhcCCcccchhHH
Confidence 445555554 33466666665554421 2678999999999999999975 422222100 112233445899
Q ss_pred HHHHHHHHhcC-CceEEEEEeChhHHHHHHHHHhCCCccEEEEeccCCcccccccccccchhHhhhhhcCcccccccccc
Q 022960 105 RAIVQDFCAKG-RVITAIIGHSKGGNAVLLYASKYNDISIVINISGRFNLKRGIEGRLGLGYLQRIKQNGFIDVRNKKGK 183 (289)
Q Consensus 105 ~~~i~~l~~~~-~~~~~l~G~S~Gg~~a~~~a~~~p~v~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (289)
..++++|+.++ ..+|.++|++|||.++..+....|++.+++.+-|.+.-....
T Consensus 107 ~~v~k~lk~~g~~kkIGv~GfCwGak~vv~~~~~~~~f~a~v~~hps~~d~~D~-------------------------- 160 (242)
T KOG3043|consen 107 TAVVKWLKNHGDSKKIGVVGFCWGAKVVVTLSAKDPEFDAGVSFHPSFVDSADI-------------------------- 160 (242)
T ss_pred HHHHHHHHHcCCcceeeEEEEeecceEEEEeeccchhheeeeEecCCcCChhHH--------------------------
Confidence 99999999885 778999999999999999998888888888877643211100
Q ss_pred cccccChhhhhhhhccchhhhhcccccCceEEEEEeCCCCccChhhHHHHHhhCCC-----cEEEEEcCCCccccc----
Q 022960 184 LEYRVTQESLMDRLSTDIHAACHMICQDCRVLTIHGTKDKMVPAEDALEFDKFIPN-----HKLHIIEGADHEFTS---- 254 (289)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~i~g~~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~gH~~~~---- 254 (289)
..+++|+|++.|+.|+++|++....+.+.+.+ .++.+++|.+|.++.
T Consensus 161 ------------------------~~vk~Pilfl~ae~D~~~p~~~v~~~ee~lk~~~~~~~~v~~f~g~~HGf~~~r~~ 216 (242)
T KOG3043|consen 161 ------------------------ANVKAPILFLFAELDEDVPPKDVKAWEEKLKENPAVGSQVKTFSGVGHGFVARRAN 216 (242)
T ss_pred ------------------------hcCCCCEEEEeecccccCCHHHHHHHHHHHhcCcccceeEEEcCCccchhhhhccC
Confidence 13489999999999999999998888877743 479999999999762
Q ss_pred --Cc------hHHHHHHHHHHHhhc
Q 022960 255 --HQ------DELASLVIQFIKANY 271 (289)
Q Consensus 255 --~~------~~~~~~i~~fl~~~~ 271 (289)
.| ++..+.+..|+++++
T Consensus 217 ~~~Ped~~~~eea~~~~~~Wf~~y~ 241 (242)
T KOG3043|consen 217 ISSPEDKKAAEEAYQRFISWFKHYL 241 (242)
T ss_pred CCChhHHHHHHHHHHHHHHHHHHhh
Confidence 12 356778888888765
No 100
>TIGR03230 lipo_lipase lipoprotein lipase. Members of this protein family are lipoprotein lipase (EC 3.1.1.34), a eukaryotic triacylglycerol lipase active in plasma and similar to pancreatic and hepatic triacylglycerol lipases (EC 3.1.1.3). It is also called clearing factor. It cleaves chylomicron and VLDL triacylglycerols; it also has phospholipase A-1 activity.
Probab=99.67 E-value=1.6e-15 Score=122.34 Aligned_cols=108 Identities=16% Similarity=0.117 Sum_probs=82.5
Q ss_pred CCcEEEEEcCCCCCCCCcchH-HHHHHHHHc--CccEEEEccccCCCCCCCccccchHHHHHHHHHHHHHHHhc---CCc
Q 022960 44 SKQLVIVCHGFQSTKDRIPMV-NLAAALERE--GISAFRFDFSGNGESEGSFLYGNYRREAEDLRAIVQDFCAK---GRV 117 (289)
Q Consensus 44 ~~~~iv~~hG~~~~~~~~~~~-~~~~~l~~~--G~~v~~~d~~G~G~s~~~~~~~~~~~~~~d~~~~i~~l~~~---~~~ 117 (289)
++|++|++||++++.....|. .+.+.|... .++|+++|++|+|.+............++++.+++++|.+. +.+
T Consensus 40 ~~ptvIlIHG~~~s~~~~~w~~~l~~al~~~~~d~nVI~VDw~g~g~s~y~~a~~~t~~vg~~la~lI~~L~~~~gl~l~ 119 (442)
T TIGR03230 40 ETKTFIVIHGWTVTGMFESWVPKLVAALYEREPSANVIVVDWLSRAQQHYPTSAAYTKLVGKDVAKFVNWMQEEFNYPWD 119 (442)
T ss_pred CCCeEEEECCCCcCCcchhhHHHHHHHHHhccCCCEEEEEECCCcCCCCCccccccHHHHHHHHHHHHHHHHHhhCCCCC
Confidence 578999999998764211244 355555432 59999999999998765433333355678888889888543 567
Q ss_pred eEEEEEeChhHHHHHHHHHhCCC-ccEEEEeccCC
Q 022960 118 ITAIIGHSKGGNAVLLYASKYND-ISIVINISGRF 151 (289)
Q Consensus 118 ~~~l~G~S~Gg~~a~~~a~~~p~-v~~~v~~~~~~ 151 (289)
+++||||||||.+|..++...|. |.++++++|..
T Consensus 120 ~VhLIGHSLGAhIAg~ag~~~p~rV~rItgLDPAg 154 (442)
T TIGR03230 120 NVHLLGYSLGAHVAGIAGSLTKHKVNRITGLDPAG 154 (442)
T ss_pred cEEEEEECHHHHHHHHHHHhCCcceeEEEEEcCCC
Confidence 99999999999999999998888 99999999853
No 101
>PF03096 Ndr: Ndr family; InterPro: IPR004142 This family consists of proteins from different gene families: Ndr1/RTP/Drg1, Ndr2, and Ndr3. Their similarity was previously noted []. The precise molecular and cellular function of members of this family is still unknown, yet they are known to be involved in cellular differentiation events. The Ndr1 group was the first to be discovered. Their expression is repressed by the proto-oncogenes N-myc and c-myc, and in line with this observation, Ndr1 protein expression is down-regulated in neoplastic cells, and is reactivated when differentiation is induced by chemicals such as retinoic acid. Ndr2 and Ndr3 expression is not under the control of N-myc or c-myc. Ndr1 expression is also activated by several chemicals: tunicamycin and homocysteine induce Ndr1 in human umbilical endothelial cells; nickel induces Ndr1 in several cell types. Members of this family are found in wide variety of multicellular eukaryotes, including an Ndr1 type protein in Helianthus annuus (Common sunflower), known as Sf21. Interestingly, the highest scoring matches in the noise are all alpha/beta hydrolases (IPR000073 from INTERPRO), suggesting that this family may have an enzymatic function.; PDB: 2QMQ_A 2XMR_B 2XMQ_B 2XMS_A.
Probab=99.65 E-value=5.9e-15 Score=110.90 Aligned_cols=235 Identities=14% Similarity=0.176 Sum_probs=129.3
Q ss_pred EeeCCCCceEEEEEeecC--CCcEEEEEcCCCCCCCCcchH-----HHHHHHHHcCccEEEEccccCCCCCCCc----cc
Q 022960 26 VIPNSHGEKLVGILHETG--SKQLVIVCHGFQSTKDRIPMV-----NLAAALEREGISAFRFDFSGNGESEGSF----LY 94 (289)
Q Consensus 26 ~~~~~~g~~l~~~~~~~~--~~~~iv~~hG~~~~~~~~~~~-----~~~~~l~~~G~~v~~~d~~G~G~s~~~~----~~ 94 (289)
.+++.-| .+...+++.. ++|+||-.|-.|-+..+ -+. .-.+.+.++ +.++-+|.||+....... .+
T Consensus 3 ~v~t~~G-~v~V~v~G~~~~~kp~ilT~HDvGlNh~s-cF~~ff~~~~m~~i~~~-f~i~Hi~aPGqe~ga~~~p~~y~y 79 (283)
T PF03096_consen 3 DVETPYG-SVHVTVQGDPKGNKPAILTYHDVGLNHKS-CFQGFFNFEDMQEILQN-FCIYHIDAPGQEEGAATLPEGYQY 79 (283)
T ss_dssp EEEETTE-EEEEEEESS--TTS-EEEEE--TT--HHH-HCHHHHCSHHHHHHHTT-SEEEEEE-TTTSTT-----TT---
T ss_pred eeccCce-EEEEEEEecCCCCCceEEEeccccccchH-HHHHHhcchhHHHHhhc-eEEEEEeCCCCCCCcccccccccc
Confidence 3444445 5676677654 59999999999987653 122 233455554 999999999997654332 35
Q ss_pred cchHHHHHHHHHHHHHHHhcCCceEEEEEeChhHHHHHHHHHhCCC-ccEEEEeccCCcccccccccccchhH-hhhhhc
Q 022960 95 GNYRREAEDLRAIVQDFCAKGRVITAIIGHSKGGNAVLLYASKYND-ISIVINISGRFNLKRGIEGRLGLGYL-QRIKQN 172 (289)
Q Consensus 95 ~~~~~~~~d~~~~i~~l~~~~~~~~~l~G~S~Gg~~a~~~a~~~p~-v~~~v~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 172 (289)
.+.++.++++.++++++ +++.++.+|--.||++..++|..+|+ |.++|++++......++ ++...++. ..+...
T Consensus 80 Psmd~LAe~l~~Vl~~f---~lk~vIg~GvGAGAnIL~rfAl~~p~~V~GLiLvn~~~~~~gw~-Ew~~~K~~~~~L~~~ 155 (283)
T PF03096_consen 80 PSMDQLAEMLPEVLDHF---GLKSVIGFGVGAGANILARFALKHPERVLGLILVNPTCTAAGWM-EWFYQKLSSWLLYSY 155 (283)
T ss_dssp --HHHHHCTHHHHHHHH---T---EEEEEETHHHHHHHHHHHHSGGGEEEEEEES---S---HH-HHHHHHHH-------
T ss_pred cCHHHHHHHHHHHHHhC---CccEEEEEeeccchhhhhhccccCccceeEEEEEecCCCCccHH-HHHHHHHhccccccc
Confidence 57789999999999999 88899999999999999999999999 99999999865443222 11111111 011111
Q ss_pred C-------------cccccccccccc---------cccChhhhhhhhc---cchhhhhcccccCceEEEEEeCCCCccCh
Q 022960 173 G-------------FIDVRNKKGKLE---------YRVTQESLMDRLS---TDIHAACHMICQDCRVLTIHGTKDKMVPA 227 (289)
Q Consensus 173 ~-------------~~~~~~~~~~~~---------~~~~~~~~~~~~~---~~~~~~~~~~~~~~P~l~i~g~~D~~~~~ 227 (289)
+ |........... ....+..+...+. .............||+|++.|+..+..
T Consensus 156 gmt~~~~d~Ll~h~Fg~~~~~~n~Dlv~~yr~~l~~~~Np~Nl~~f~~sy~~R~DL~~~~~~~~c~vLlvvG~~Sp~~-- 233 (283)
T PF03096_consen 156 GMTSSVKDYLLWHYFGKEEEENNSDLVQTYRQHLDERINPKNLALFLNSYNSRTDLSIERPSLGCPVLLVVGDNSPHV-- 233 (283)
T ss_dssp CTTS-HHHHHHHHHS-HHHHHCT-HHHHHHHHHHHT-TTHHHHHHHHHHHHT-----SECTTCCS-EEEEEETTSTTH--
T ss_pred ccccchHHhhhhcccccccccccHHHHHHHHHHHhcCCCHHHHHHHHHHHhccccchhhcCCCCCCeEEEEecCCcch--
Confidence 1 100000000000 0011111111111 000001111134799999999999864
Q ss_pred hhHHHHHhhCC--CcEEEEEcCCCcccc-cCchHHHHHHHHHHHh
Q 022960 228 EDALEFDKFIP--NHKLHIIEGADHEFT-SHQDELASLVIQFIKA 269 (289)
Q Consensus 228 ~~~~~~~~~~~--~~~~~~~~~~gH~~~-~~~~~~~~~i~~fl~~ 269 (289)
+.+.++..++. +.++..++++|=.+. +.|.++++.+.-||+.
T Consensus 234 ~~vv~~ns~Ldp~~ttllkv~dcGglV~eEqP~klaea~~lFlQG 278 (283)
T PF03096_consen 234 DDVVEMNSKLDPTKTTLLKVADCGGLVLEEQPGKLAEAFKLFLQG 278 (283)
T ss_dssp HHHHHHHHHS-CCCEEEEEETT-TT-HHHH-HHHHHHHHHHHHHH
T ss_pred hhHHHHHhhcCcccceEEEecccCCcccccCcHHHHHHHHHHHcc
Confidence 66667777773 478999999988866 6678899999999875
No 102
>PF07859 Abhydrolase_3: alpha/beta hydrolase fold A web page of Esterases and alpha/beta hydrolases.; InterPro: IPR013094 The alpha/beta hydrolase fold [] is common to a number of hydrolytic enzymes of widely differing phylogenetic origin and catalytic function. The core of each enzyme is an alpha/beta-sheet (rather than a barrel), containing 8 strands connected by helices []. The enzymes are believed to have diverged from a common ancestor, preserving the arrangement of the catalytic residues. All have a catalytic triad, the elements of which are borne on loops, which are the best conserved structural features of the fold. Esterase (EST) from Pseudomonas putida is a member of the alpha/beta hydrolase fold superfamily of enzymes []. In most of the family members the beta-strands are parallels, but some have an inversion of the first strands, which gives it an antiparallel orientation. The catalytic triad residues are presented on loops. One of these is the nucleophile elbow and is the most conserved feature of the fold. Some other members lack one or all of the catalytic residues. Some members are therefore inactive but others are involved in surface recognition. The ESTHER database [] gathers and annotates all the published information related to gene and protein sequences of this superfamily []. This entry represents the catalytic domain fold-3 of alpha/beta hydrolase. ; GO: 0016787 hydrolase activity, 0008152 metabolic process; PDB: 3D7R_B 2C7B_B 3ZWQ_B 2YH2_B 3BXP_A 3D3N_A 1LZK_A 1LZL_A 2O7V_A 2O7R_A ....
Probab=99.65 E-value=1.9e-15 Score=113.35 Aligned_cols=99 Identities=22% Similarity=0.192 Sum_probs=73.0
Q ss_pred EEEEcCCCCCCCC-cchHHHHHHHHH-cCccEEEEccccCCCCCCCccccchHHHHHHHHHHHHHHHhc------CCceE
Q 022960 48 VIVCHGFQSTKDR-IPMVNLAAALER-EGISAFRFDFSGNGESEGSFLYGNYRREAEDLRAIVQDFCAK------GRVIT 119 (289)
Q Consensus 48 iv~~hG~~~~~~~-~~~~~~~~~l~~-~G~~v~~~d~~G~G~s~~~~~~~~~~~~~~d~~~~i~~l~~~------~~~~~ 119 (289)
||++||++..... .....++..+++ .|+.|+.+|+|= .....+.+..+|+.++++++.++ +.+++
T Consensus 1 v~~~HGGg~~~g~~~~~~~~~~~la~~~g~~v~~~~Yrl-------~p~~~~p~~~~D~~~a~~~l~~~~~~~~~d~~~i 73 (211)
T PF07859_consen 1 VVYIHGGGWVMGSKESHWPFAARLAAERGFVVVSIDYRL-------APEAPFPAALEDVKAAYRWLLKNADKLGIDPERI 73 (211)
T ss_dssp EEEE--STTTSCGTTTHHHHHHHHHHHHTSEEEEEE----------TTTSSTTHHHHHHHHHHHHHHHTHHHHTEEEEEE
T ss_pred CEEECCcccccCChHHHHHHHHHHHhhccEEEEEeeccc-------cccccccccccccccceeeeccccccccccccce
Confidence 7999998865332 224556667765 799999999993 23346678889999999998775 46699
Q ss_pred EEEEeChhHHHHHHHHHhC-----CCccEEEEeccCCcc
Q 022960 120 AIIGHSKGGNAVLLYASKY-----NDISIVINISGRFNL 153 (289)
Q Consensus 120 ~l~G~S~Gg~~a~~~a~~~-----p~v~~~v~~~~~~~~ 153 (289)
+|+|+|.||.+++.++... +.++++++++|..+.
T Consensus 74 ~l~G~SAGg~la~~~~~~~~~~~~~~~~~~~~~~p~~d~ 112 (211)
T PF07859_consen 74 VLIGDSAGGHLALSLALRARDRGLPKPKGIILISPWTDL 112 (211)
T ss_dssp EEEEETHHHHHHHHHHHHHHHTTTCHESEEEEESCHSST
T ss_pred EEeecccccchhhhhhhhhhhhcccchhhhhcccccccc
Confidence 9999999999999998753 228999999997765
No 103
>PF06028 DUF915: Alpha/beta hydrolase of unknown function (DUF915); InterPro: IPR010315 This family consists of bacterial proteins of unknown function, which are hydrolase-like.; PDB: 3LP5_A 3FLE_A 3DS8_A.
Probab=99.64 E-value=3.4e-14 Score=107.17 Aligned_cols=203 Identities=23% Similarity=0.393 Sum_probs=126.2
Q ss_pred CCcEEEEEcCCCCCCCCcchHHHHHHHH-HcCcc--EEE--EccccC----CCCC----CC-------ccc-cchHHHHH
Q 022960 44 SKQLVIVCHGFQSTKDRIPMVNLAAALE-REGIS--AFR--FDFSGN----GESE----GS-------FLY-GNYRREAE 102 (289)
Q Consensus 44 ~~~~iv~~hG~~~~~~~~~~~~~~~~l~-~~G~~--v~~--~d~~G~----G~s~----~~-------~~~-~~~~~~~~ 102 (289)
...|.||+||++++..+ +..++..+. +.|.. ++. ++--|+ |.-. .+ ... .++...+.
T Consensus 10 ~~tPTifihG~~gt~~s--~~~mi~~~~~~~~~~~~~l~v~V~~~G~v~~~G~~~~~~~nPiIqV~F~~n~~~~~~~qa~ 87 (255)
T PF06028_consen 10 STTPTIFIHGYGGTANS--FNHMINRLENKQGVAQKVLTVTVSKNGKVKVSGKLSKNAKNPIIQVNFEDNRNANYKKQAK 87 (255)
T ss_dssp S-EEEEEE--TTGGCCC--CHHHHHHHHHCSTS-S-EEEEEEETTSEEEEES---TT-SS-EEEEEESSTT-CHHHHHHH
T ss_pred CCCcEEEECCCCCChhH--HHHHHHHHHhhcCCCceEEEEEECCCCeEEEeeecCCCCCCCEEEEEecCCCcCCHHHHHH
Confidence 45689999999999876 899999997 66543 333 333332 2111 11 112 36778899
Q ss_pred HHHHHHHHHHhc-CCceEEEEEeChhHHHHHHHHHhC------CCccEEEEeccCCcccccccccccchhHhhhhhcCcc
Q 022960 103 DLRAIVQDFCAK-GRVITAIIGHSKGGNAVLLYASKY------NDISIVINISGRFNLKRGIEGRLGLGYLQRIKQNGFI 175 (289)
Q Consensus 103 d~~~~i~~l~~~-~~~~~~l~G~S~Gg~~a~~~a~~~------p~v~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (289)
.+..++.+|+++ +++++.+|||||||..++.++..+ |.+..+|.++++++.......... ...+.
T Consensus 88 wl~~vl~~L~~~Y~~~~~N~VGHSmGg~~~~~yl~~~~~~~~~P~l~K~V~Ia~pfng~~~~~~~~~---~~~~~----- 159 (255)
T PF06028_consen 88 WLKKVLKYLKKKYHFKKFNLVGHSMGGLSWTYYLENYGNDKNLPKLNKLVTIAGPFNGILGMNDDQN---QNDLN----- 159 (255)
T ss_dssp HHHHHHHHHHHCC--SEEEEEEETHHHHHHHHHHHHCTTGTTS-EEEEEEEES--TTTTTCCSC-TT---TT-CS-----
T ss_pred HHHHHHHHHHHhcCCCEEeEEEECccHHHHHHHHHHhccCCCCcccceEEEeccccCccccccccch---hhhhc-----
Confidence 999999999888 899999999999999999998874 458999999998875432211100 00000
Q ss_pred cccccccccccccChhhhhhhhccchhhhhcccccCceEEEEEeC------CCCccChhhHHHHHhhCCC----cEEEEE
Q 022960 176 DVRNKKGKLEYRVTQESLMDRLSTDIHAACHMICQDCRVLTIHGT------KDKMVPAEDALEFDKFIPN----HKLHII 245 (289)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~i~g~------~D~~~~~~~~~~~~~~~~~----~~~~~~ 245 (289)
..+ .....+.+...+.. . ...++..+.+|-|.|. .|..||...+..+...+.+ .+-..+
T Consensus 160 ----~~g---p~~~~~~y~~l~~~-~---~~~~p~~i~VLnI~G~~~~g~~sDG~V~~~Ss~sl~~L~~~~~~~Y~e~~v 228 (255)
T PF06028_consen 160 ----KNG---PKSMTPMYQDLLKN-R---RKNFPKNIQVLNIYGDLEDGSNSDGIVPNASSLSLRYLLKNRAKSYQEKTV 228 (255)
T ss_dssp ----TT----BSS--HHHHHHHHT-H---GGGSTTT-EEEEEEEESBTTCSBTSSSBHHHHCTHHHHCTTTSSEEEEEEE
T ss_pred ----ccC---CcccCHHHHHHHHH-H---HhhCCCCeEEEEEecccCCCCCCCeEEeHHHHHHHHHHhhcccCceEEEEE
Confidence 000 00011111111111 0 1222347899999999 8999999999888887754 355556
Q ss_pred cC--CCcccccCchHHHHHHHHHH
Q 022960 246 EG--ADHEFTSHQDELASLVIQFI 267 (289)
Q Consensus 246 ~~--~gH~~~~~~~~~~~~i~~fl 267 (289)
.| +.|.-+.+.+++.+.|.+||
T Consensus 229 ~G~~a~HS~LheN~~V~~~I~~FL 252 (255)
T PF06028_consen 229 TGKDAQHSQLHENPQVDKLIIQFL 252 (255)
T ss_dssp ESGGGSCCGGGCCHHHHHHHHHHH
T ss_pred ECCCCccccCCCCHHHHHHHHHHh
Confidence 54 68996667789999999998
No 104
>PRK05371 x-prolyl-dipeptidyl aminopeptidase; Provisional
Probab=99.64 E-value=1.7e-14 Score=125.59 Aligned_cols=206 Identities=14% Similarity=0.144 Sum_probs=127.5
Q ss_pred HHHHHHHHcCccEEEEccccCCCCCCCccccchHHHHHHHHHHHHHHHhc-----------------CCceEEEEEeChh
Q 022960 65 NLAAALEREGISAFRFDFSGNGESEGSFLYGNYRREAEDLRAIVQDFCAK-----------------GRVITAIIGHSKG 127 (289)
Q Consensus 65 ~~~~~l~~~G~~v~~~d~~G~G~s~~~~~~~~~~~~~~d~~~~i~~l~~~-----------------~~~~~~l~G~S~G 127 (289)
.+.++|+.+||.|+..|.||.|.|.+...... ....+|..++|+|+..+ ...+|.++|.|+|
T Consensus 270 ~~~~~~~~rGYaVV~~D~RGtg~SeG~~~~~~-~~E~~D~~~vIeWl~~~~~~~~d~~~~~~~kq~WsnGkVGm~G~SY~ 348 (767)
T PRK05371 270 SLNDYFLPRGFAVVYVSGIGTRGSDGCPTTGD-YQEIESMKAVIDWLNGRATAYTDRTRGKEVKADWSNGKVAMTGKSYL 348 (767)
T ss_pred hHHHHHHhCCeEEEEEcCCCCCCCCCcCccCC-HHHHHHHHHHHHHHhhCCccccccccccccccCCCCCeeEEEEEcHH
Confidence 46688999999999999999999998765433 56678999999999743 1459999999999
Q ss_pred HHHHHHHHHhCCC-ccEEEEeccCCccccccccc--c-------c--chhHhhhhhcCcccccc-cccccccccChhhhh
Q 022960 128 GNAVLLYASKYND-ISIVINISGRFNLKRGIEGR--L-------G--LGYLQRIKQNGFIDVRN-KKGKLEYRVTQESLM 194 (289)
Q Consensus 128 g~~a~~~a~~~p~-v~~~v~~~~~~~~~~~~~~~--~-------~--~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 194 (289)
|.+++.+|...|. ++++|..++..++....... + . ................. ......+......+.
T Consensus 349 G~~~~~aAa~~pp~LkAIVp~a~is~~yd~yr~~G~~~~~~g~~ged~d~l~~~~~~r~~~~~~~~~~~~~~~~~~~~~~ 428 (767)
T PRK05371 349 GTLPNAVATTGVEGLETIIPEAAISSWYDYYRENGLVRAPGGYQGEDLDVLAELTYSRNLLAGDYLRHNEACEKLLAELT 428 (767)
T ss_pred HHHHHHHHhhCCCcceEEEeeCCCCcHHHHhhcCCceeccCCcCCcchhhHHHHhhhcccCcchhhcchHHHHHHHhhhh
Confidence 9999999988877 99999988765433211100 0 0 00000000000000000 000000000000000
Q ss_pred h-----------hhc-cchhhhhcccccCceEEEEEeCCCCccChhhHHHHHhhCC----CcEEEEEcCCCccccc--Cc
Q 022960 195 D-----------RLS-TDIHAACHMICQDCRVLTIHGTKDKMVPAEDALEFDKFIP----NHKLHIIEGADHEFTS--HQ 256 (289)
Q Consensus 195 ~-----------~~~-~~~~~~~~~~~~~~P~l~i~g~~D~~~~~~~~~~~~~~~~----~~~~~~~~~~gH~~~~--~~ 256 (289)
. .+. .+..... .++++|+|+++|..|..++++.+.++++.+. ..++.+.+ .+|.... ..
T Consensus 429 ~~~~~~~~~y~~fW~~rn~~~~~--~kIkvPvLlIhGw~D~~V~~~~s~~ly~aL~~~g~pkkL~l~~-g~H~~~~~~~~ 505 (767)
T PRK05371 429 AAQDRKTGDYNDFWDDRNYLKDA--DKIKASVLVVHGLNDWNVKPKQVYQWWDALPENGVPKKLFLHQ-GGHVYPNNWQS 505 (767)
T ss_pred hhhhhcCCCccHHHHhCCHhhHh--hCCCCCEEEEeeCCCCCCChHHHHHHHHHHHhcCCCeEEEEeC-CCccCCCchhH
Confidence 0 000 0111111 2568999999999999999888877776653 35665555 5787432 34
Q ss_pred hHHHHHHHHHHHhhcCCC
Q 022960 257 DELASLVIQFIKANYQKD 274 (289)
Q Consensus 257 ~~~~~~i~~fl~~~~~~~ 274 (289)
.++.+.+.+|++.++...
T Consensus 506 ~d~~e~~~~Wfd~~LkG~ 523 (767)
T PRK05371 506 IDFRDTMNAWFTHKLLGI 523 (767)
T ss_pred HHHHHHHHHHHHhccccC
Confidence 578899999999988653
No 105
>cd00707 Pancreat_lipase_like Pancreatic lipase-like enzymes. Lipases are esterases that can hydrolyze long-chain acyl-triglycerides into di- and monoglycerides, glycerol, and free fatty acids at a water/lipid interface. A typical feature of lipases is "interfacial activation," the process of becoming active at the lipid/water interface, although several examples of lipases have been identified that do not undergo interfacial activation . The active site of a lipase contains a catalytic triad consisting of Ser - His - Asp/Glu, but unlike most serine proteases, the active site is buried inside the structure. A "lid" or "flap" covers the active site, making it inaccessible to solvent and substrates. The lid opens during the process of interfacial activation, allowing the lipid substrate access to the active site.
Probab=99.64 E-value=1.8e-15 Score=116.92 Aligned_cols=109 Identities=16% Similarity=0.199 Sum_probs=81.4
Q ss_pred CCcEEEEEcCCCCCCCCcchHHHHHHHH-HcCccEEEEccccCCCCCCCccccchHHHHHHHHHHHHHHHhc---CCceE
Q 022960 44 SKQLVIVCHGFQSTKDRIPMVNLAAALE-REGISAFRFDFSGNGESEGSFLYGNYRREAEDLRAIVQDFCAK---GRVIT 119 (289)
Q Consensus 44 ~~~~iv~~hG~~~~~~~~~~~~~~~~l~-~~G~~v~~~d~~G~G~s~~~~~~~~~~~~~~d~~~~i~~l~~~---~~~~~ 119 (289)
++|++|++||++++....+...+.+.+. ..+++|+++|+++++.+.......+.....+++..+++.+.+. +.+++
T Consensus 35 ~~p~vilIHG~~~~~~~~~~~~l~~~ll~~~~~nVi~vD~~~~~~~~y~~a~~~~~~v~~~la~~l~~L~~~~g~~~~~i 114 (275)
T cd00707 35 SRPTRFIIHGWTSSGEESWISDLRKAYLSRGDYNVIVVDWGRGANPNYPQAVNNTRVVGAELAKFLDFLVDNTGLSLENV 114 (275)
T ss_pred CCCcEEEEcCCCCCCCCcHHHHHHHHHHhcCCCEEEEEECccccccChHHHHHhHHHHHHHHHHHHHHHHHhcCCChHHE
Confidence 5789999999999873222344555454 4579999999998743322112223455567888888888664 45789
Q ss_pred EEEEeChhHHHHHHHHHhCCC-ccEEEEeccCCc
Q 022960 120 AIIGHSKGGNAVLLYASKYND-ISIVINISGRFN 152 (289)
Q Consensus 120 ~l~G~S~Gg~~a~~~a~~~p~-v~~~v~~~~~~~ 152 (289)
+++||||||.+|..++...|+ |+++++++|...
T Consensus 115 ~lIGhSlGa~vAg~~a~~~~~~v~~iv~LDPa~p 148 (275)
T cd00707 115 HLIGHSLGAHVAGFAGKRLNGKLGRITGLDPAGP 148 (275)
T ss_pred EEEEecHHHHHHHHHHHHhcCccceeEEecCCcc
Confidence 999999999999999999988 999999987643
No 106
>PF12715 Abhydrolase_7: Abhydrolase family; PDB: 3NUZ_C 3G8Y_A.
Probab=99.63 E-value=7.3e-15 Score=114.28 Aligned_cols=134 Identities=18% Similarity=0.143 Sum_probs=86.8
Q ss_pred CCcccceeeEEeeCCCCceEEEEEeecC----CCcEEEEEcCCCCCCCC-------------c---chHHHHHHHHHcCc
Q 022960 16 QDPVVQRRRVVIPNSHGEKLVGILHETG----SKQLVIVCHGFQSTKDR-------------I---PMVNLAAALEREGI 75 (289)
Q Consensus 16 ~~~~~~~~~~~~~~~~g~~l~~~~~~~~----~~~~iv~~hG~~~~~~~-------------~---~~~~~~~~l~~~G~ 75 (289)
...+...+.+.|.+.++..+..++..|. +.|+||++||-++..+. . .-..+...|+++||
T Consensus 82 qrdGY~~EKv~f~~~p~~~vpaylLvPd~~~~p~PAVL~lHgHg~~Ke~~~g~~gv~~~~~~~~~~~~~~~g~~LAk~GY 161 (390)
T PF12715_consen 82 QRDGYTREKVEFNTTPGSRVPAYLLVPDGAKGPFPAVLCLHGHGGGKEKMAGEDGVSPDLKDDYDDPKQDYGDQLAKRGY 161 (390)
T ss_dssp EETTEEEEEEEE--STTB-EEEEEEEETT--S-EEEEEEE--TT--HHHHCT---SSGCG--STTSTTT-HHHHHHTTTS
T ss_pred ecCCeEEEEEEEEccCCeeEEEEEEecCCCCCCCCEEEEeCCCCCCcccccCCcccccccchhhccccccHHHHHHhCCC
Confidence 3456788899999999999988876554 56799999997765421 0 01346889999999
Q ss_pred cEEEEccccCCCCCCCcc-----ccchHH---------------HHHHHHHHHHHHHhc---CCceEEEEEeChhHHHHH
Q 022960 76 SAFRFDFSGNGESEGSFL-----YGNYRR---------------EAEDLRAIVQDFCAK---GRVITAIIGHSKGGNAVL 132 (289)
Q Consensus 76 ~v~~~d~~G~G~s~~~~~-----~~~~~~---------------~~~d~~~~i~~l~~~---~~~~~~l~G~S~Gg~~a~ 132 (289)
.|+++|.+|+|+...... ..++.. .+.|...++++|... +.++|.++|+||||..++
T Consensus 162 Vvla~D~~g~GER~~~e~~~~~~~~~~~~la~~~l~lG~S~~G~~~~ddmr~lDfL~slpeVD~~RIG~~GfSmGg~~a~ 241 (390)
T PF12715_consen 162 VVLAPDALGFGERGDMEGAAQGSNYDCQALARNLLMLGRSLAGLMAWDDMRALDFLASLPEVDPDRIGCMGFSMGGYRAW 241 (390)
T ss_dssp EEEEE--TTSGGG-SSCCCTTTTS--HHHHHHHHHHTT--HHHHHHHHHHHHHHHHCT-TTEEEEEEEEEEEGGGHHHHH
T ss_pred EEEEEccccccccccccccccccchhHHHHHHHHHHcCcCHHHHHHHHHHHHHHHHhcCcccCccceEEEeecccHHHHH
Confidence 999999999998764321 111111 124555688888776 567999999999999999
Q ss_pred HHHHhCCCccEEEEecc
Q 022960 133 LYASKYNDISIVINISG 149 (289)
Q Consensus 133 ~~a~~~p~v~~~v~~~~ 149 (289)
.+++..++|++.|..+-
T Consensus 242 ~LaALDdRIka~v~~~~ 258 (390)
T PF12715_consen 242 WLAALDDRIKATVANGY 258 (390)
T ss_dssp HHHHH-TT--EEEEES-
T ss_pred HHHHcchhhHhHhhhhh
Confidence 99999999988886654
No 107
>KOG2624 consensus Triglyceride lipase-cholesterol esterase [Lipid transport and metabolism]
Probab=99.63 E-value=2.7e-14 Score=113.80 Aligned_cols=135 Identities=19% Similarity=0.203 Sum_probs=106.4
Q ss_pred CcccceeeEEeeCCCCceEEEEEee--cCCCcEEEEEcCCCCCCCCcch----HHHHHHHHHcCccEEEEccccCCCCCC
Q 022960 17 DPVVQRRRVVIPNSHGEKLVGILHE--TGSKQLVIVCHGFQSTKDRIPM----VNLAAALEREGISAFRFDFSGNGESEG 90 (289)
Q Consensus 17 ~~~~~~~~~~~~~~~g~~l~~~~~~--~~~~~~iv~~hG~~~~~~~~~~----~~~~~~l~~~G~~v~~~d~~G~G~s~~ 90 (289)
..+.+.++..+.+.||..+.....+ .+++|+|++.||+.+++..|.. ..++-.|+++||.|..-+.||--.|.+
T Consensus 43 ~~gy~~E~h~V~T~DgYiL~lhRIp~~~~~rp~Vll~HGLl~sS~~Wv~n~p~~sLaf~LadaGYDVWLgN~RGn~ySr~ 122 (403)
T KOG2624|consen 43 KYGYPVEEHEVTTEDGYILTLHRIPRGKKKRPVVLLQHGLLASSSSWVLNGPEQSLAFLLADAGYDVWLGNNRGNTYSRK 122 (403)
T ss_pred HcCCceEEEEEEccCCeEEEEeeecCCCCCCCcEEEeeccccccccceecCccccHHHHHHHcCCceeeecCcCcccchh
Confidence 3457788999999999876654332 2688999999999998876422 346677899999999999999766542
Q ss_pred C----------ccccchHHHH-HHHHHHHHHHHhc-CCceEEEEEeChhHHHHHHHHHhCCC----ccEEEEeccCC
Q 022960 91 S----------FLYGNYRREA-EDLRAIVQDFCAK-GRVITAIIGHSKGGNAVLLYASKYND----ISIVINISGRF 151 (289)
Q Consensus 91 ~----------~~~~~~~~~~-~d~~~~i~~l~~~-~~~~~~l~G~S~Gg~~a~~~a~~~p~----v~~~v~~~~~~ 151 (289)
. +-..++.+++ .|+.+.|+++.+. +.++++.+|||.|+.....++...|+ |+.+++++|..
T Consensus 123 h~~l~~~~~~~FW~FS~~Em~~yDLPA~IdyIL~~T~~~kl~yvGHSQGtt~~fv~lS~~p~~~~kI~~~~aLAP~~ 199 (403)
T KOG2624|consen 123 HKKLSPSSDKEFWDFSWHEMGTYDLPAMIDYILEKTGQEKLHYVGHSQGTTTFFVMLSERPEYNKKIKSFIALAPAA 199 (403)
T ss_pred hcccCCcCCcceeecchhhhhhcCHHHHHHHHHHhccccceEEEEEEccchhheehhcccchhhhhhheeeeecchh
Confidence 1 2234556644 7999999999776 67899999999999999998888865 89999999866
No 108
>PF00975 Thioesterase: Thioesterase domain; InterPro: IPR001031 Thioesterase domains often occur integrated in or associated with peptide synthetases which are involved in the non-ribosomal synthesis of peptide antibiotics []. Thioesterases are required for the addition of the last amino acid to the peptide antibiotic, thereby forming a cyclic antibiotic. Next to the operons encoding these enzymes, in almost all cases, are genes that encode proteins that have similarity to the type II fatty acid thioesterases of vertebrates.; GO: 0016788 hydrolase activity, acting on ester bonds, 0009058 biosynthetic process; PDB: 2RON_A 2K2Q_B 3LCR_B 2HFJ_B 1MNQ_A 1MN6_B 1MNA_B 2HFK_B 2H7Y_B 2H7X_A ....
Probab=99.63 E-value=5.8e-15 Score=112.19 Aligned_cols=211 Identities=14% Similarity=0.161 Sum_probs=122.7
Q ss_pred cEEEEEcCCCCCCCCcchHHHHHHHHHcCccEEEEccccCCCCCCCccccchHHHHHHHHHHHHHHHhcCCceEEEEEeC
Q 022960 46 QLVIVCHGFQSTKDRIPMVNLAAALEREGISAFRFDFSGNGESEGSFLYGNYRREAEDLRAIVQDFCAKGRVITAIIGHS 125 (289)
Q Consensus 46 ~~iv~~hG~~~~~~~~~~~~~~~~l~~~G~~v~~~d~~G~G~s~~~~~~~~~~~~~~d~~~~i~~l~~~~~~~~~l~G~S 125 (289)
++|+++|+.+++.. .|..+++.|...++.|+.++++|.+ .......++++++++..+.|...... .++.|+|||
T Consensus 1 ~~lf~~p~~gG~~~--~y~~la~~l~~~~~~v~~i~~~~~~--~~~~~~~si~~la~~y~~~I~~~~~~--gp~~L~G~S 74 (229)
T PF00975_consen 1 RPLFCFPPAGGSAS--SYRPLARALPDDVIGVYGIEYPGRG--DDEPPPDSIEELASRYAEAIRARQPE--GPYVLAGWS 74 (229)
T ss_dssp -EEEEESSTTCSGG--GGHHHHHHHTTTEEEEEEECSTTSC--TTSHEESSHHHHHHHHHHHHHHHTSS--SSEEEEEET
T ss_pred CeEEEEcCCccCHH--HHHHHHHhCCCCeEEEEEEecCCCC--CCCCCCCCHHHHHHHHHHHhhhhCCC--CCeeehccC
Confidence 47999999999884 5999999998744889999999988 33334567788887777777655322 289999999
Q ss_pred hhHHHHHHHHHhC---CC-ccEEEEeccCCcccccccc--cccch-hHhhhhhcCcccccccccccccccChhhhhhhhc
Q 022960 126 KGGNAVLLYASKY---ND-ISIVINISGRFNLKRGIEG--RLGLG-YLQRIKQNGFIDVRNKKGKLEYRVTQESLMDRLS 198 (289)
Q Consensus 126 ~Gg~~a~~~a~~~---p~-v~~~v~~~~~~~~~~~~~~--~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (289)
+||.+|..+|.+. .. +..+++++++......... ..... +...+............. ......+.+.+.
T Consensus 75 ~Gg~lA~E~A~~Le~~G~~v~~l~liD~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~ 150 (229)
T PF00975_consen 75 FGGILAFEMARQLEEAGEEVSRLILIDSPPPSIKERPRSREPSDEQFIEELRRIGGTPDASLED----EELLARLLRALR 150 (229)
T ss_dssp HHHHHHHHHHHHHHHTT-SESEEEEESCSSTTCHSCHHHHHCHHHHHHHHHHHHCHHHHHHCHH----HHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhhhccCceEEecCCCCCcccchhhhhhhHHHHHHHHHHhcCCchhhhcC----HHHHHHHHHHHH
Confidence 9999999999764 23 8999999965443211111 11000 111111111000000000 000001111111
Q ss_pred cchhhhhc--cccc---CceEEEEEeCCCCccChh---hHHHHHhhCCC-cEEEEEcCCCcccccC--chHHHHHHHHHH
Q 022960 199 TDIHAACH--MICQ---DCRVLTIHGTKDKMVPAE---DALEFDKFIPN-HKLHIIEGADHEFTSH--QDELASLVIQFI 267 (289)
Q Consensus 199 ~~~~~~~~--~~~~---~~P~l~i~g~~D~~~~~~---~~~~~~~~~~~-~~~~~~~~~gH~~~~~--~~~~~~~i~~fl 267 (289)
........ .... .+|.++.....|+..... ....+.+..++ .+++.++| +|+.+.. ..++++.|.+||
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~v~G-~H~~~l~~~~~~i~~~I~~~~ 229 (229)
T PF00975_consen 151 DDFQALENYSIRPIDKQKVPITLFYALDDPLVSMDRLEEADRWWDYTSGDVEVHDVPG-DHFSMLKPHVAEIAEKIAEWL 229 (229)
T ss_dssp HHHHHHHTCS-TTSSSESSEEEEEEECSSSSSSHHCGGHHCHHHGCBSSSEEEEEESS-ETTGHHSTTHHHHHHHHHHHH
T ss_pred HHHHHHhhccCCccccCCCcEEEEecCCCccccchhhhhHHHHHHhcCCCcEEEEEcC-CCcEecchHHHHHHHHHhccC
Confidence 11100000 0011 457888899999887665 23336666654 57888885 8996643 356777776665
No 109
>KOG1515 consensus Arylacetamide deacetylase [Defense mechanisms]
Probab=99.62 E-value=6.7e-14 Score=109.33 Aligned_cols=238 Identities=17% Similarity=0.107 Sum_probs=131.4
Q ss_pred cceeeEEeeCCCCceEEEEEeecC------CCcEEEEEcCCCCCC---CCcchHHHHHHHHHc-CccEEEEccccCCCCC
Q 022960 20 VQRRRVVIPNSHGEKLVGILHETG------SKQLVIVCHGFQSTK---DRIPMVNLAAALERE-GISAFRFDFSGNGESE 89 (289)
Q Consensus 20 ~~~~~~~~~~~~g~~l~~~~~~~~------~~~~iv~~hG~~~~~---~~~~~~~~~~~l~~~-G~~v~~~d~~G~G~s~ 89 (289)
+...++.+....+ +..+++.|. ..|.||++||+|..- ....|..+...++.. +..|+.+|||=
T Consensus 61 v~~~dv~~~~~~~--l~vRly~P~~~~~~~~~p~lvyfHGGGf~~~S~~~~~y~~~~~~~a~~~~~vvvSVdYRL----- 133 (336)
T KOG1515|consen 61 VTSKDVTIDPFTN--LPVRLYRPTSSSSETKLPVLVYFHGGGFCLGSANSPAYDSFCTRLAAELNCVVVSVDYRL----- 133 (336)
T ss_pred ceeeeeEecCCCC--eEEEEEcCCCCCcccCceEEEEEeCCccEeCCCCCchhHHHHHHHHHHcCeEEEecCccc-----
Confidence 4445555555444 444455443 568999999988533 234577888888654 88899999992
Q ss_pred CCccccchHHHHHHHHHHHHHHHhc-------CCceEEEEEeChhHHHHHHHHHhC-------CCccEEEEeccCCcccc
Q 022960 90 GSFLYGNYRREAEDLRAIVQDFCAK-------GRVITAIIGHSKGGNAVLLYASKY-------NDISIVINISGRFNLKR 155 (289)
Q Consensus 90 ~~~~~~~~~~~~~d~~~~i~~l~~~-------~~~~~~l~G~S~Gg~~a~~~a~~~-------p~v~~~v~~~~~~~~~~ 155 (289)
.....+....+|..+++.|+.++ +.++++|+|-|.||.+|..++.+. +.+++.|++.|.+....
T Consensus 134 --APEh~~Pa~y~D~~~Al~w~~~~~~~~~~~D~~rv~l~GDSaGGNia~~va~r~~~~~~~~~ki~g~ili~P~~~~~~ 211 (336)
T KOG1515|consen 134 --APEHPFPAAYDDGWAALKWVLKNSWLKLGADPSRVFLAGDSAGGNIAHVVAQRAADEKLSKPKIKGQILIYPFFQGTD 211 (336)
T ss_pred --CCCCCCCccchHHHHHHHHHHHhHHHHhCCCcccEEEEccCccHHHHHHHHHHHhhccCCCcceEEEEEEecccCCCC
Confidence 22233344455666666665443 778999999999999998887653 22999999999876543
Q ss_pred ccccccc-----chhHhhhhhcCcccccccccccccccChhhhhhhhccchhhhhcccccCceEEEEEeCCCCccChh--
Q 022960 156 GIEGRLG-----LGYLQRIKQNGFIDVRNKKGKLEYRVTQESLMDRLSTDIHAACHMICQDCRVLTIHGTKDKMVPAE-- 228 (289)
Q Consensus 156 ~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~i~g~~D~~~~~~-- 228 (289)
....... ...........+.......... . ....+.............. .--.|+|++.++.|.+....
T Consensus 212 ~~~~e~~~~~~~~~~~~~~~~~~~w~~~lP~~~~--~-~~~p~~np~~~~~~~d~~~-~~lp~tlv~~ag~D~L~D~~~~ 287 (336)
T KOG1515|consen 212 RTESEKQQNLNGSPELARPKIDKWWRLLLPNGKT--D-LDHPFINPVGNSLAKDLSG-LGLPPTLVVVAGYDVLRDEGLA 287 (336)
T ss_pred CCCHHHHHhhcCCcchhHHHHHHHHHHhCCCCCC--C-cCCccccccccccccCccc-cCCCceEEEEeCchhhhhhhHH
Confidence 3322110 0000000000000000000000 0 0000000000000000001 11245999999999886322
Q ss_pred hHHHHHhhCCCcEEEEEcCCCcccc-cC-----chHHHHHHHHHHHhh
Q 022960 229 DALEFDKFIPNHKLHIIEGADHEFT-SH-----QDELASLVIQFIKAN 270 (289)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~gH~~~-~~-----~~~~~~~i~~fl~~~ 270 (289)
.++++.+.--.+++..++++.|.++ .. ..++.+.+.+|+++.
T Consensus 288 Y~~~Lkk~Gv~v~~~~~e~~~H~~~~~~~~~~~a~~~~~~i~~fi~~~ 335 (336)
T KOG1515|consen 288 YAEKLKKAGVEVTLIHYEDGFHGFHILDPSSKEAHALMDAIVEFIKSN 335 (336)
T ss_pred HHHHHHHcCCeEEEEEECCCeeEEEecCCchhhHHHHHHHHHHHHhhc
Confidence 2334433333467778999999964 22 236778888888753
No 110
>KOG2931 consensus Differentiation-related gene 1 protein (NDR1 protein), related proteins [Function unknown]
Probab=99.62 E-value=2.3e-13 Score=101.12 Aligned_cols=241 Identities=15% Similarity=0.131 Sum_probs=152.8
Q ss_pred eeeEEeeCCCCceEEEEEeecC--CCcEEEEEcCCCCCCCC----cchHHHHHHHHHcCccEEEEccccCCCCCCCc---
Q 022960 22 RRRVVIPNSHGEKLVGILHETG--SKQLVIVCHGFQSTKDR----IPMVNLAAALEREGISAFRFDFSGNGESEGSF--- 92 (289)
Q Consensus 22 ~~~~~~~~~~g~~l~~~~~~~~--~~~~iv~~hG~~~~~~~----~~~~~~~~~l~~~G~~v~~~d~~G~G~s~~~~--- 92 (289)
.++..+.+.-| .++..+++.. ++|+||-.|..+-+..+ .+..+-+..+.++ |.|+.+|.|||-......
T Consensus 22 ~~e~~V~T~~G-~v~V~V~Gd~~~~kpaiiTyhDlglN~~scFq~ff~~p~m~ei~~~-fcv~HV~~PGqe~gAp~~p~~ 99 (326)
T KOG2931|consen 22 CQEHDVETAHG-VVHVTVYGDPKGNKPAIITYHDLGLNHKSCFQGFFNFPDMAEILEH-FCVYHVDAPGQEDGAPSFPEG 99 (326)
T ss_pred ceeeeeccccc-cEEEEEecCCCCCCceEEEecccccchHhHhHHhhcCHhHHHHHhh-eEEEecCCCccccCCccCCCC
Confidence 45667776666 3666666543 58999999999988764 1122234455666 999999999996654332
Q ss_pred -cccchHHHHHHHHHHHHHHHhcCCceEEEEEeChhHHHHHHHHHhCCC-ccEEEEeccCCcccccccccccchhHhh--
Q 022960 93 -LYGNYRREAEDLRAIVQDFCAKGRVITAIIGHSKGGNAVLLYASKYND-ISIVINISGRFNLKRGIEGRLGLGYLQR-- 168 (289)
Q Consensus 93 -~~~~~~~~~~d~~~~i~~l~~~~~~~~~l~G~S~Gg~~a~~~a~~~p~-v~~~v~~~~~~~~~~~~~~~~~~~~~~~-- 168 (289)
...+.++.++++..+++++ +.+.++-+|.-.|++|..++|..+|+ |-++|++++......++ ++....+...
T Consensus 100 y~yPsmd~LAd~l~~VL~~f---~lk~vIg~GvGAGAyIL~rFAl~hp~rV~GLvLIn~~~~a~gwi-ew~~~K~~s~~l 175 (326)
T KOG2931|consen 100 YPYPSMDDLADMLPEVLDHF---GLKSVIGMGVGAGAYILARFALNHPERVLGLVLINCDPCAKGWI-EWAYNKVSSNLL 175 (326)
T ss_pred CCCCCHHHHHHHHHHHHHhc---CcceEEEecccccHHHHHHHHhcChhheeEEEEEecCCCCchHH-HHHHHHHHHHHH
Confidence 3567899999999999999 88899999999999999999999999 99999998755433222 1111111110
Q ss_pred ------------hhhcCccccccccccc---------ccccChhhhhhhh---cc--chhhhh--cccccCceEEEEEeC
Q 022960 169 ------------IKQNGFIDVRNKKGKL---------EYRVTQESLMDRL---ST--DIHAAC--HMICQDCRVLTIHGT 220 (289)
Q Consensus 169 ------------~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~---~~--~~~~~~--~~~~~~~P~l~i~g~ 220 (289)
+....|..-....... .....+..+...+ .. +..... ....++||+|++.|+
T Consensus 176 ~~~Gmt~~~~d~ll~H~Fg~e~~~~~~diVq~Yr~~l~~~~N~~Nl~~fl~ayn~R~DL~~~r~~~~~tlkc~vllvvGd 255 (326)
T KOG2931|consen 176 YYYGMTQGVKDYLLAHHFGKEELGNNSDIVQEYRQHLGERLNPKNLALFLNAYNGRRDLSIERPKLGTTLKCPVLLVVGD 255 (326)
T ss_pred HhhchhhhHHHHHHHHHhccccccccHHHHHHHHHHHHhcCChhHHHHHHHHhcCCCCccccCCCcCccccccEEEEecC
Confidence 0001111000000000 0001111111111 10 000000 001346999999999
Q ss_pred CCCccChhhHHHHHhhCC--CcEEEEEcCCCccccc-CchHHHHHHHHHHHhh
Q 022960 221 KDKMVPAEDALEFDKFIP--NHKLHIIEGADHEFTS-HQDELASLVIQFIKAN 270 (289)
Q Consensus 221 ~D~~~~~~~~~~~~~~~~--~~~~~~~~~~gH~~~~-~~~~~~~~i~~fl~~~ 270 (289)
+.+.+ +.+.++...+. +..+..+.++|-.+.+ .|..+.+.+.-|++..
T Consensus 256 ~Sp~~--~~vv~~n~~Ldp~~ttllk~~d~g~l~~e~qP~kl~ea~~~FlqG~ 306 (326)
T KOG2931|consen 256 NSPHV--SAVVECNSKLDPTYTTLLKMADCGGLVQEEQPGKLAEAFKYFLQGM 306 (326)
T ss_pred CCchh--hhhhhhhcccCcccceEEEEcccCCcccccCchHHHHHHHHHHccC
Confidence 98765 55556666663 4788999999998886 6788999999999753
No 111
>PF06057 VirJ: Bacterial virulence protein (VirJ); InterPro: IPR010333 This entry contains several bacterial VirJ virulence proteins. VirJ is thought to be involved in the type IV secretion system. It is thought that the substrate proteins localised to the periplasm may associate with the pilus in a manner that is mediated by VirJ, and suggest a two-step process for type IV secretion in Agrobacterium [].
Probab=99.61 E-value=6e-14 Score=98.89 Aligned_cols=183 Identities=21% Similarity=0.250 Sum_probs=122.1
Q ss_pred cEEEEEcCCCCCCCCcchHHHHHHHHHcCccEEEEccccCCCCCCCccccchHHHHHHHHHHHHHHHhc-CCceEEEEEe
Q 022960 46 QLVIVCHGFQSTKDRIPMVNLAAALEREGISAFRFDFSGNGESEGSFLYGNYRREAEDLRAIVQDFCAK-GRVITAIIGH 124 (289)
Q Consensus 46 ~~iv~~hG~~~~~~~~~~~~~~~~l~~~G~~v~~~d~~G~G~s~~~~~~~~~~~~~~d~~~~i~~l~~~-~~~~~~l~G~ 124 (289)
..+||+-|-||-.. +-..+++.|+++|+.|+.+|-+-|-.+.+ +.++.+.|+.+++++..++ +.++++|+|+
T Consensus 3 t~~v~~SGDgGw~~--~d~~~a~~l~~~G~~VvGvdsl~Yfw~~r-----tP~~~a~Dl~~~i~~y~~~w~~~~vvLiGY 75 (192)
T PF06057_consen 3 TLAVFFSGDGGWRD--LDKQIAEALAKQGVPVVGVDSLRYFWSER-----TPEQTAADLARIIRHYRARWGRKRVVLIGY 75 (192)
T ss_pred EEEEEEeCCCCchh--hhHHHHHHHHHCCCeEEEechHHHHhhhC-----CHHHHHHHHHHHHHHHHHHhCCceEEEEee
Confidence 46788888888763 46789999999999999999875544432 4477789999999988777 7889999999
Q ss_pred ChhHHHHHHHHHhCCC-----ccEEEEeccCCcccccccccccchhHhhhhhcCcccccccccccccccChhhhhhhhcc
Q 022960 125 SKGGNAVLLYASKYND-----ISIVINISGRFNLKRGIEGRLGLGYLQRIKQNGFIDVRNKKGKLEYRVTQESLMDRLST 199 (289)
Q Consensus 125 S~Gg~~a~~~a~~~p~-----v~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (289)
|+|+-+......+.|. |+.++++++.....-.+ ....|+..-... ...
T Consensus 76 SFGADvlP~~~nrLp~~~r~~v~~v~Ll~p~~~~dFei---hv~~wlg~~~~~------------------------~~~ 128 (192)
T PF06057_consen 76 SFGADVLPFIYNRLPAALRARVAQVVLLSPSTTADFEI---HVSGWLGMGGDD------------------------AAY 128 (192)
T ss_pred cCCchhHHHHHhhCCHHHHhheeEEEEeccCCcceEEE---EhhhhcCCCCCc------------------------ccC
Confidence 9999998888887764 88999998754322111 000000000000 000
Q ss_pred chhhhhcccccCceEEEEEeCCCCccChhhHHHHHhhCCCcEEEEEcCCCcccccCchHHHHHHHHHHHh
Q 022960 200 DIHAACHMICQDCRVLTIHGTKDKMVPAEDALEFDKFIPNHKLHIIEGADHEFTSHQDELASLVIQFIKA 269 (289)
Q Consensus 200 ~~~~~~~~~~~~~P~l~i~g~~D~~~~~~~~~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~i~~fl~~ 269 (289)
+.......+. ..|+++|+|++|.-.... .+. .++.+.+.+|| ||.|-.+.+.+.+.|.+-++.
T Consensus 129 ~~~pei~~l~-~~~v~CiyG~~E~d~~cp---~l~--~~~~~~i~lpG-gHHfd~dy~~La~~Il~~l~~ 191 (192)
T PF06057_consen 129 PVIPEIAKLP-PAPVQCIYGEDEDDSLCP---SLR--QPGVEVIALPG-GHHFDGDYDALAKRILDALKA 191 (192)
T ss_pred CchHHHHhCC-CCeEEEEEcCCCCCCcCc---ccc--CCCcEEEEcCC-CcCCCCCHHHHHHHHHHHHhc
Confidence 1111111121 469999999988642211 111 25789999997 676666677888888777653
No 112
>COG3571 Predicted hydrolase of the alpha/beta-hydrolase fold [General function prediction only]
Probab=99.61 E-value=2.7e-13 Score=91.40 Aligned_cols=183 Identities=20% Similarity=0.244 Sum_probs=118.4
Q ss_pred ecCCC-cEEEEEcCCCCCCCCcchHHHHHHHHHcCccEEEEccccCCCC-----CCCccccch-HHHHHHHHHHHHHHHh
Q 022960 41 ETGSK-QLVIVCHGFQSTKDRIPMVNLAAALEREGISAFRFDFSGNGES-----EGSFLYGNY-RREAEDLRAIVQDFCA 113 (289)
Q Consensus 41 ~~~~~-~~iv~~hG~~~~~~~~~~~~~~~~l~~~G~~v~~~d~~G~G~s-----~~~~~~~~~-~~~~~d~~~~i~~l~~ 113 (289)
++++. .+||+-||.|++.++......+..|+.+|+.|..++++..-.. ..++...+. +.+...+.++-..+
T Consensus 9 pag~~~~tilLaHGAGasmdSt~m~~~a~~la~~G~~vaRfefpYma~Rrtg~rkPp~~~~t~~~~~~~~~aql~~~l-- 86 (213)
T COG3571 9 PAGPAPVTILLAHGAGASMDSTSMTAVAAALARRGWLVARFEFPYMAARRTGRRKPPPGSGTLNPEYIVAIAQLRAGL-- 86 (213)
T ss_pred CCCCCCEEEEEecCCCCCCCCHHHHHHHHHHHhCceeEEEeecchhhhccccCCCCcCccccCCHHHHHHHHHHHhcc--
Confidence 44544 4789999999998887788999999999999999998854322 122222111 22222333332222
Q ss_pred cCCceEEEEEeChhHHHHHHHHHhCCC-ccEEEEeccCCcccccccccccchhHhhhhhcCcccccccccccccccChhh
Q 022960 114 KGRVITAIIGHSKGGNAVLLYASKYND-ISIVINISGRFNLKRGIEGRLGLGYLQRIKQNGFIDVRNKKGKLEYRVTQES 192 (289)
Q Consensus 114 ~~~~~~~l~G~S~Gg~~a~~~a~~~p~-v~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (289)
.-.++++-|+||||.++..++....- |+++++++=++...-. .+....
T Consensus 87 -~~gpLi~GGkSmGGR~aSmvade~~A~i~~L~clgYPfhppGK-Pe~~Rt----------------------------- 135 (213)
T COG3571 87 -AEGPLIIGGKSMGGRVASMVADELQAPIDGLVCLGYPFHPPGK-PEQLRT----------------------------- 135 (213)
T ss_pred -cCCceeeccccccchHHHHHHHhhcCCcceEEEecCccCCCCC-cccchh-----------------------------
Confidence 34489999999999999998877655 9999988754432210 000000
Q ss_pred hhhhhccchhhhhcccccCceEEEEEeCCCCccChhhHHHHHhhCCCcEEEEEcCCCcccccC-----------chHHHH
Q 022960 193 LMDRLSTDIHAACHMICQDCRVLTIHGTKDKMVPAEDALEFDKFIPNHKLHIIEGADHEFTSH-----------QDELAS 261 (289)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~P~l~i~g~~D~~~~~~~~~~~~~~~~~~~~~~~~~~gH~~~~~-----------~~~~~~ 261 (289)
.....+++|+||++|+.|++-..+... -+...+..++++++++.|.+-.. -...++
T Consensus 136 ------------~HL~gl~tPtli~qGtrD~fGtr~~Va-~y~ls~~iev~wl~~adHDLkp~k~vsgls~~~hL~~~A~ 202 (213)
T COG3571 136 ------------EHLTGLKTPTLITQGTRDEFGTRDEVA-GYALSDPIEVVWLEDADHDLKPRKLVSGLSTADHLKTLAE 202 (213)
T ss_pred ------------hhccCCCCCeEEeecccccccCHHHHH-hhhcCCceEEEEeccCccccccccccccccHHHHHHHHHH
Confidence 000134899999999999987766652 22333568999999999985211 123566
Q ss_pred HHHHHHHh
Q 022960 262 LVIQFIKA 269 (289)
Q Consensus 262 ~i~~fl~~ 269 (289)
+|..|...
T Consensus 203 ~va~~~~~ 210 (213)
T COG3571 203 QVAGWARR 210 (213)
T ss_pred HHHHHHhh
Confidence 77777654
No 113
>COG0657 Aes Esterase/lipase [Lipid metabolism]
Probab=99.59 E-value=4.2e-13 Score=106.65 Aligned_cols=216 Identities=15% Similarity=0.081 Sum_probs=126.5
Q ss_pred CCceEEEEEeec--C---CCcEEEEEcCCCCCCCC-cch-HHHHHHHHHcCccEEEEccccCCCCCCCccccchHHHHHH
Q 022960 31 HGEKLVGILHET--G---SKQLVIVCHGFQSTKDR-IPM-VNLAAALEREGISAFRFDFSGNGESEGSFLYGNYRREAED 103 (289)
Q Consensus 31 ~g~~l~~~~~~~--~---~~~~iv~~hG~~~~~~~-~~~-~~~~~~l~~~G~~v~~~d~~G~G~s~~~~~~~~~~~~~~d 103 (289)
++..+.+..+.| . ..|+||++||++..... ... ..+...+...|+.|+.+|||- .....+....+|
T Consensus 60 ~~~~~~~~~y~p~~~~~~~~p~vly~HGGg~~~g~~~~~~~~~~~~~~~~g~~vv~vdYrl-------aPe~~~p~~~~d 132 (312)
T COG0657 60 SGDGVPVRVYRPDRKAAATAPVVLYLHGGGWVLGSLRTHDALVARLAAAAGAVVVSVDYRL-------APEHPFPAALED 132 (312)
T ss_pred CCCceeEEEECCCCCCCCCCcEEEEEeCCeeeecChhhhHHHHHHHHHHcCCEEEecCCCC-------CCCCCCCchHHH
Confidence 333344555554 2 47999999998854322 113 445555566799999999993 333456777888
Q ss_pred HHHHHHHHHhc------CCceEEEEEeChhHHHHHHHHHhCC-----CccEEEEeccCCccccccccc--------ccch
Q 022960 104 LRAIVQDFCAK------GRVITAIIGHSKGGNAVLLYASKYN-----DISIVINISGRFNLKRGIEGR--------LGLG 164 (289)
Q Consensus 104 ~~~~i~~l~~~------~~~~~~l~G~S~Gg~~a~~~a~~~p-----~v~~~v~~~~~~~~~~~~~~~--------~~~~ 164 (289)
+.+++.++.++ +.++|+++|+|.||.+++.++.... ...+.++++|..+........ +...
T Consensus 133 ~~~a~~~l~~~~~~~g~dp~~i~v~GdSAGG~La~~~a~~~~~~~~~~p~~~~li~P~~d~~~~~~~~~~~~~~~~~~~~ 212 (312)
T COG0657 133 AYAAYRWLRANAAELGIDPSRIAVAGDSAGGHLALALALAARDRGLPLPAAQVLISPLLDLTSSAASLPGYGEADLLDAA 212 (312)
T ss_pred HHHHHHHHHhhhHhhCCCccceEEEecCcccHHHHHHHHHHHhcCCCCceEEEEEecccCCcccccchhhcCCccccCHH
Confidence 88899888766 3679999999999999999887643 378999999987766410000 0000
Q ss_pred hHh-hhhhcCcccccccccccccccChhhhhhhhccchhhhhcccccCceEEEEEeCCCCccC--hhhHHHHHhhCCCcE
Q 022960 165 YLQ-RIKQNGFIDVRNKKGKLEYRVTQESLMDRLSTDIHAACHMICQDCRVLTIHGTKDKMVP--AEDALEFDKFIPNHK 241 (289)
Q Consensus 165 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~i~g~~D~~~~--~~~~~~~~~~~~~~~ 241 (289)
... .+............. . ...-+..+ . ... -.|+++++|+.|.+.+ ...++.+.+.-..++
T Consensus 213 ~~~~~~~~~~~~~~~~~~~--------p-~~spl~~~---~--~~~-lPP~~i~~a~~D~l~~~~~~~a~~L~~agv~~~ 277 (312)
T COG0657 213 AILAWFADLYLGAAPDRED--------P-EASPLASD---D--LSG-LPPTLIQTAEFDPLRDEGEAYAERLRAAGVPVE 277 (312)
T ss_pred HHHHHHHHHhCcCccccCC--------C-ccCccccc---c--ccC-CCCEEEEecCCCcchhHHHHHHHHHHHcCCeEE
Confidence 000 000000000000000 0 00000000 0 011 3689999999999987 222333444444579
Q ss_pred EEEEcCCCcccc--cCc--hHHHHHHHHHHH
Q 022960 242 LHIIEGADHEFT--SHQ--DELASLVIQFIK 268 (289)
Q Consensus 242 ~~~~~~~gH~~~--~~~--~~~~~~i~~fl~ 268 (289)
+..+++..|.+. ..+ .+....+.+|+.
T Consensus 278 ~~~~~g~~H~f~~~~~~~a~~~~~~~~~~l~ 308 (312)
T COG0657 278 LRVYPGMIHGFDLLTGPEARSALRQIAAFLR 308 (312)
T ss_pred EEEeCCcceeccccCcHHHHHHHHHHHHHHH
Confidence 999999999874 221 233455666665
No 114
>PF12146 Hydrolase_4: Putative lysophospholipase; InterPro: IPR022742 This domain is found in bacteria and eukaryotes and is approximately 110 amino acids in length. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins.
Probab=99.59 E-value=6.3e-15 Score=90.47 Aligned_cols=76 Identities=30% Similarity=0.529 Sum_probs=64.7
Q ss_pred CceEEEEEeecC-C-CcEEEEEcCCCCCCCCcchHHHHHHHHHcCccEEEEccccCCCCCCCc-cccchHHHHHHHHHHH
Q 022960 32 GEKLVGILHETG-S-KQLVIVCHGFQSTKDRIPMVNLAAALEREGISAFRFDFSGNGESEGSF-LYGNYRREAEDLRAIV 108 (289)
Q Consensus 32 g~~l~~~~~~~~-~-~~~iv~~hG~~~~~~~~~~~~~~~~l~~~G~~v~~~d~~G~G~s~~~~-~~~~~~~~~~d~~~~i 108 (289)
|.+|+++.+.|. + +.+|+++||++.+... |..+++.|+++||.|+++|+||||.|.+.. ...++++.++|+..++
T Consensus 1 G~~L~~~~w~p~~~~k~~v~i~HG~~eh~~r--y~~~a~~L~~~G~~V~~~D~rGhG~S~g~rg~~~~~~~~v~D~~~~~ 78 (79)
T PF12146_consen 1 GTKLFYRRWKPENPPKAVVVIVHGFGEHSGR--YAHLAEFLAEQGYAVFAYDHRGHGRSEGKRGHIDSFDDYVDDLHQFI 78 (79)
T ss_pred CcEEEEEEecCCCCCCEEEEEeCCcHHHHHH--HHHHHHHHHhCCCEEEEECCCcCCCCCCcccccCCHHHHHHHHHHHh
Confidence 567888877765 3 7899999999998864 999999999999999999999999999755 3467888899998876
Q ss_pred H
Q 022960 109 Q 109 (289)
Q Consensus 109 ~ 109 (289)
+
T Consensus 79 ~ 79 (79)
T PF12146_consen 79 Q 79 (79)
T ss_pred C
Confidence 3
No 115
>KOG2281 consensus Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Posttranslational modification, protein turnover, chaperones]
Probab=99.58 E-value=2.5e-13 Score=110.76 Aligned_cols=226 Identities=15% Similarity=0.168 Sum_probs=139.7
Q ss_pred eeEEeeCCCCceEEEEEeecC------CCcEEEEEcCCCCCC---CCcchHH--HHHHHHHcCccEEEEccccCCCCCCC
Q 022960 23 RRVVIPNSHGEKLVGILHETG------SKQLVIVCHGFQSTK---DRIPMVN--LAAALEREGISAFRFDFSGNGESEGS 91 (289)
Q Consensus 23 ~~~~~~~~~g~~l~~~~~~~~------~~~~iv~~hG~~~~~---~~~~~~~--~~~~l~~~G~~v~~~d~~G~G~s~~~ 91 (289)
+-+.+.+..|..+++.++.|. +-|+++++-|+++.. +++.+.. -...|+..||.|+++|-||.-.....
T Consensus 614 eif~fqs~tg~~lYgmiyKPhn~~pgkkYptvl~VYGGP~VQlVnnsfkgi~ylR~~~LaslGy~Vv~IDnRGS~hRGlk 693 (867)
T KOG2281|consen 614 EIFSFQSKTGLTLYGMIYKPHNFQPGKKYPTVLNVYGGPGVQLVNNSFKGIQYLRFCRLASLGYVVVFIDNRGSAHRGLK 693 (867)
T ss_pred hheeeecCCCcEEEEEEEccccCCCCCCCceEEEEcCCCceEEeeccccceehhhhhhhhhcceEEEEEcCCCccccchh
Confidence 557778888999999888663 468999999988632 1121221 23467888999999999997655433
Q ss_pred ccc-----cchHHHHHHHHHHHHHHHhc----CCceEEEEEeChhHHHHHHHHHhCCC-ccEEEEeccCCcccccccccc
Q 022960 92 FLY-----GNYRREAEDLRAIVQDFCAK----GRVITAIIGHSKGGNAVLLYASKYND-ISIVINISGRFNLKRGIEGRL 161 (289)
Q Consensus 92 ~~~-----~~~~~~~~d~~~~i~~l~~~----~~~~~~l~G~S~Gg~~a~~~a~~~p~-v~~~v~~~~~~~~~~~~~~~~ 161 (289)
+.. .. .-.++|-.+.+++|.++ +.++|.+-|+|+||++++....++|+ ++..|.-+|..++. . .
T Consensus 694 FE~~ik~kmG-qVE~eDQVeglq~Laeq~gfidmdrV~vhGWSYGGYLSlm~L~~~P~IfrvAIAGapVT~W~-~----Y 767 (867)
T KOG2281|consen 694 FESHIKKKMG-QVEVEDQVEGLQMLAEQTGFIDMDRVGVHGWSYGGYLSLMGLAQYPNIFRVAIAGAPVTDWR-L----Y 767 (867)
T ss_pred hHHHHhhccC-eeeehhhHHHHHHHHHhcCcccchheeEeccccccHHHHHHhhcCcceeeEEeccCcceeee-e----e
Confidence 210 00 11135555555666555 67899999999999999999999999 66666555543321 1 1
Q ss_pred cchhHhhhhhcCcccccccccccccccChhhhhhhhccchhhhhcccccCceEEEEEeCCCCccChhhHHHHHhhC----
Q 022960 162 GLGYLQRIKQNGFIDVRNKKGKLEYRVTQESLMDRLSTDIHAACHMICQDCRVLTIHGTKDKMVPAEDALEFDKFI---- 237 (289)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~i~g~~D~~~~~~~~~~~~~~~---- 237 (289)
...+..+. ..............+.......+. . -....|++||--|+.|.+.+...+...+
T Consensus 768 DTgYTERY-----Mg~P~~nE~gY~agSV~~~Veklp--------d--epnRLlLvHGliDENVHF~Hts~Lvs~lvkag 832 (867)
T KOG2281|consen 768 DTGYTERY-----MGYPDNNEHGYGAGSVAGHVEKLP--------D--EPNRLLLVHGLIDENVHFAHTSRLVSALVKAG 832 (867)
T ss_pred cccchhhh-----cCCCccchhcccchhHHHHHhhCC--------C--CCceEEEEecccccchhhhhHHHHHHHHHhCC
Confidence 11111111 111100000000001111111111 1 1446899999999999988777665554
Q ss_pred CCcEEEEEcCCCcccc--cCchHHHHHHHHHHHh
Q 022960 238 PNHKLHIIEGADHEFT--SHQDELASLVIQFIKA 269 (289)
Q Consensus 238 ~~~~~~~~~~~gH~~~--~~~~~~~~~i~~fl~~ 269 (289)
+..++.++|+.-|.+- +...-+-..+..|+++
T Consensus 833 KpyeL~IfP~ERHsiR~~es~~~yE~rll~FlQ~ 866 (867)
T KOG2281|consen 833 KPYELQIFPNERHSIRNPESGIYYEARLLHFLQE 866 (867)
T ss_pred CceEEEEccccccccCCCccchhHHHHHHHHHhh
Confidence 4469999999999964 3345567778888875
No 116
>KOG2100 consensus Dipeptidyl aminopeptidase [Posttranslational modification, protein turnover, chaperones]
Probab=99.58 E-value=2.1e-13 Score=118.52 Aligned_cols=228 Identities=17% Similarity=0.206 Sum_probs=145.0
Q ss_pred cceeeEEeeCCCCceEEEEEeecC------CCcEEEEEcCCCCCCCC--cchHHHHHH-HHHcCccEEEEccccCCCCCC
Q 022960 20 VQRRRVVIPNSHGEKLVGILHETG------SKQLVIVCHGFQSTKDR--IPMVNLAAA-LEREGISAFRFDFSGNGESEG 90 (289)
Q Consensus 20 ~~~~~~~~~~~~g~~l~~~~~~~~------~~~~iv~~hG~~~~~~~--~~~~~~~~~-l~~~G~~v~~~d~~G~G~s~~ 90 (289)
....++.+ +|....+....|+ +-|.+|.+||++++... .+-..+... ....|+.|+.+|.||.|....
T Consensus 498 ~~~~~i~~---~~~~~~~~~~lP~~~~~~~kyPllv~~yGGP~sq~v~~~~~~~~~~~~~s~~g~~v~~vd~RGs~~~G~ 574 (755)
T KOG2100|consen 498 VEFGKIEI---DGITANAILILPPNFDPSKKYPLLVVVYGGPGSQSVTSKFSVDWNEVVVSSRGFAVLQVDGRGSGGYGW 574 (755)
T ss_pred ceeEEEEe---ccEEEEEEEecCCCCCCCCCCCEEEEecCCCCcceeeeeEEecHHHHhhccCCeEEEEEcCCCcCCcch
Confidence 34444444 7877777665442 45788999999973211 112233334 556699999999999876654
Q ss_pred Ccccc---ch-HHHHHHHHHHHHHHHhc---CCceEEEEEeChhHHHHHHHHHhCCC--ccEEEEeccCCcccccccccc
Q 022960 91 SFLYG---NY-RREAEDLRAIVQDFCAK---GRVITAIIGHSKGGNAVLLYASKYND--ISIVINISGRFNLKRGIEGRL 161 (289)
Q Consensus 91 ~~~~~---~~-~~~~~d~~~~i~~l~~~---~~~~~~l~G~S~Gg~~a~~~a~~~p~--v~~~v~~~~~~~~~~~~~~~~ 161 (289)
..... .+ ...++|...+++.+.+. +.+++.++|+|+||++++.++...|. ++..+.++|..++. ......
T Consensus 575 ~~~~~~~~~lG~~ev~D~~~~~~~~~~~~~iD~~ri~i~GwSyGGy~t~~~l~~~~~~~fkcgvavaPVtd~~-~yds~~ 653 (755)
T KOG2100|consen 575 DFRSALPRNLGDVEVKDQIEAVKKVLKLPFIDRSRVAIWGWSYGGYLTLKLLESDPGDVFKCGVAVAPVTDWL-YYDSTY 653 (755)
T ss_pred hHHHHhhhhcCCcchHHHHHHHHHHHhcccccHHHeEEeccChHHHHHHHHhhhCcCceEEEEEEecceeeee-eecccc
Confidence 32111 11 12356777777766655 67799999999999999999999984 67779999987765 211111
Q ss_pred cchhHhhhhhcCcccccccccccccccChhhhhhhhccchhhhhcccccCce-EEEEEeCCCCccChhhHHHHHhhCC--
Q 022960 162 GLGYLQRIKQNGFIDVRNKKGKLEYRVTQESLMDRLSTDIHAACHMICQDCR-VLTIHGTKDKMVPAEDALEFDKFIP-- 238 (289)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P-~l~i~g~~D~~~~~~~~~~~~~~~~-- 238 (289)
...++ . ...... ....+ ........ .++.| .|++||+.|..|+.+++..+.+.+.
T Consensus 654 terym----g-----~p~~~~--------~~y~e---~~~~~~~~--~~~~~~~LliHGt~DdnVh~q~s~~~~~aL~~~ 711 (755)
T KOG2100|consen 654 TERYM----G-----LPSEND--------KGYEE---SSVSSPAN--NIKTPKLLLIHGTEDDNVHFQQSAILIKALQNA 711 (755)
T ss_pred cHhhc----C-----CCcccc--------chhhh---ccccchhh--hhccCCEEEEEcCCcCCcCHHHHHHHHHHHHHC
Confidence 11110 0 000000 00000 01111111 12444 5999999999999999888887764
Q ss_pred --CcEEEEEcCCCcccccCc--hHHHHHHHHHHHhhcCC
Q 022960 239 --NHKLHIIEGADHEFTSHQ--DELASLVIQFIKANYQK 273 (289)
Q Consensus 239 --~~~~~~~~~~gH~~~~~~--~~~~~~i~~fl~~~~~~ 273 (289)
..++.++|+..|.+.... ..+...+..|+..++..
T Consensus 712 gv~~~~~vypde~H~is~~~~~~~~~~~~~~~~~~~~~~ 750 (755)
T KOG2100|consen 712 GVPFRLLVYPDENHGISYVEVISHLYEKLDRFLRDCFGS 750 (755)
T ss_pred CCceEEEEeCCCCcccccccchHHHHHHHHHHHHHHcCc
Confidence 278999999999976544 67899999999976654
No 117
>KOG2551 consensus Phospholipase/carboxyhydrolase [Amino acid transport and metabolism]
Probab=99.57 E-value=1.6e-13 Score=98.08 Aligned_cols=181 Identities=18% Similarity=0.197 Sum_probs=117.2
Q ss_pred CCcEEEEEcCCCCCCCCc--chHHHHHHHHHcCccEEEEcccc------CCCCCC------Cc---------------cc
Q 022960 44 SKQLVIVCHGFQSTKDRI--PMVNLAAALEREGISAFRFDFSG------NGESEG------SF---------------LY 94 (289)
Q Consensus 44 ~~~~iv~~hG~~~~~~~~--~~~~~~~~l~~~G~~v~~~d~~G------~G~s~~------~~---------------~~ 94 (289)
.++-|+|+||+-.+.... -...+.+.|.+. +..+.+|-|- .-.+.+ +. ..
T Consensus 4 ~k~rvLcLHGfrQsg~~F~~Ktg~~rK~l~k~-~el~f~~aPh~~~~~~~~~~~~~~~~~a~~~~~~~~~~Wf~~n~~~~ 82 (230)
T KOG2551|consen 4 KKLRVLCLHGFRQSGKVFSEKTGSLRKLLKKL-AELVFPDAPHELPKADLPDSEREKKFDAPPDVEQNRYGWFSNNEASF 82 (230)
T ss_pred CCceEEEecchhhccHHHHHHhhhHHHHHHhh-heEEecCCCccCCcccCCcccccccccCCcccccchhhhhccccccc
Confidence 457899999999887530 122355566665 7777777662 111100 00 00
Q ss_pred cchHHHHHHHHHHHHHHHhcCCceE-EEEEeChhHHHHHHHHHh---------CCCccEEEEeccCCcccccccccccch
Q 022960 95 GNYRREAEDLRAIVQDFCAKGRVIT-AIIGHSKGGNAVLLYASK---------YNDISIVINISGRFNLKRGIEGRLGLG 164 (289)
Q Consensus 95 ~~~~~~~~d~~~~i~~l~~~~~~~~-~l~G~S~Gg~~a~~~a~~---------~p~v~~~v~~~~~~~~~~~~~~~~~~~ 164 (289)
..+...-+-+..+.+++.+++ ++ .|+|+|.|+.++..++.. .|.++-+|++++.........
T Consensus 83 ~~~~~~eesl~yl~~~i~enG--PFDGllGFSQGA~laa~l~~~~~~~~~~~~~P~~kF~v~~SGf~~~~~~~~------ 154 (230)
T KOG2551|consen 83 TEYFGFEESLEYLEDYIKENG--PFDGLLGFSQGAALAALLAGLGQKGLPYVKQPPFKFAVFISGFKFPSKKLD------ 154 (230)
T ss_pred ccccChHHHHHHHHHHHHHhC--CCccccccchhHHHHHHhhcccccCCcccCCCCeEEEEEEecCCCCcchhh------
Confidence 011111233556666666664 33 899999999999998872 234788888887543321100
Q ss_pred hHhhhhhcCcccccccccccccccChhhhhhhhccchhhhhcccccCceEEEEEeCCCCccChhhHHHHHhhCCCcEEEE
Q 022960 165 YLQRIKQNGFIDVRNKKGKLEYRVTQESLMDRLSTDIHAACHMICQDCRVLTIHGTKDKMVPAEDALEFDKFIPNHKLHI 244 (289)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~i~g~~D~~~~~~~~~~~~~~~~~~~~~~ 244 (289)
.......+++|.|.|.|+.|.++|...++.|++.+++..++.
T Consensus 155 --------------------------------------~~~~~~~i~~PSLHi~G~~D~iv~~~~s~~L~~~~~~a~vl~ 196 (230)
T KOG2551|consen 155 --------------------------------------ESAYKRPLSTPSLHIFGETDTIVPSERSEQLAESFKDATVLE 196 (230)
T ss_pred --------------------------------------hhhhccCCCCCeeEEecccceeecchHHHHHHHhcCCCeEEe
Confidence 000111458999999999999999999999999999997777
Q ss_pred EcCCCcccccCchHHHHHHHHHHHhhcCC
Q 022960 245 IEGADHEFTSHQDELASLVIQFIKANYQK 273 (289)
Q Consensus 245 ~~~~gH~~~~~~~~~~~~i~~fl~~~~~~ 273 (289)
-+ +||.+... ..+.+.|.+||...+..
T Consensus 197 Hp-ggH~VP~~-~~~~~~i~~fi~~~~~~ 223 (230)
T KOG2551|consen 197 HP-GGHIVPNK-AKYKEKIADFIQSFLQE 223 (230)
T ss_pred cC-CCccCCCc-hHHHHHHHHHHHHHHHh
Confidence 77 49997532 37788888888876644
No 118
>PF08840 BAAT_C: BAAT / Acyl-CoA thioester hydrolase C terminal; InterPro: IPR014940 Acyl-CoA thioesterases are a group of enzymes that catalyse the hydrolysis of acyl-CoAs to the free fatty acid and coenzyme A (CoASH), providing the potential to regulate intracellular levels of acyl-CoAs, free fatty acids and CoASH. Bile acid-CoA:amino acid N-acetyltransferase (BAAT) is involved in bile acid metabolism and may also act as an acyl-CoA thioesterase that regulates intracellular levels of free fatty acids []. This entry represents a catalytic domain is found at the C terminus of acyl-CoA thioester hydrolases and bile acid-CoA:amino acid N-acetyltransferases. ; PDB: 3K2I_B 3HLK_B.
Probab=99.57 E-value=5.1e-14 Score=104.69 Aligned_cols=169 Identities=23% Similarity=0.223 Sum_probs=84.9
Q ss_pred HHHHHHHHHHHhc---CCceEEEEEeChhHHHHHHHHHhCCCccEEEEeccCCcccccccccccch-hHhhhhhcCcccc
Q 022960 102 EDLRAIVQDFCAK---GRVITAIIGHSKGGNAVLLYASKYNDISIVINISGRFNLKRGIEGRLGLG-YLQRIKQNGFIDV 177 (289)
Q Consensus 102 ~d~~~~i~~l~~~---~~~~~~l~G~S~Gg~~a~~~a~~~p~v~~~v~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 177 (289)
+.+.+++++|+++ +.++|.|+|.|.||-+|+.+|..+|+|+++|.++|............... ....+........
T Consensus 4 Eyfe~Ai~~L~~~p~v~~~~Igi~G~SkGaelALllAs~~~~i~avVa~~ps~~~~~~~~~~~~~~~~lp~~~~~~~~~~ 83 (213)
T PF08840_consen 4 EYFEEAIDWLKSHPEVDPDKIGIIGISKGAELALLLASRFPQISAVVAISPSSVVFQGIGFYRDSSKPLPYLPFDISKFS 83 (213)
T ss_dssp HHHHHHHHHHHCSTTB--SSEEEEEETHHHHHHHHHHHHSSSEEEEEEES--SB--SSEEEETTE--EE----B-GGG-E
T ss_pred HHHHHHHHHHHhCCCCCCCCEEEEEECHHHHHHHHHHhcCCCccEEEEeCCceeEecchhcccCCCccCCcCCcChhhce
Confidence 4567888999887 34689999999999999999999999999999998654433222111110 0000000000000
Q ss_pred cccccccccccChhhhhhhhccchhhhhcccccCceEEEEEeCCCCccChhh-HHHHHhhC-----C-CcEEEEEcCCCc
Q 022960 178 RNKKGKLEYRVTQESLMDRLSTDIHAACHMICQDCRVLTIHGTKDKMVPAED-ALEFDKFI-----P-NHKLHIIEGADH 250 (289)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~i~g~~D~~~~~~~-~~~~~~~~-----~-~~~~~~~~~~gH 250 (289)
.................... .......-.++++|+|++.|++|.+.|... ++.+.+++ + +.+++.|+++||
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~--~~~a~IpvE~i~~piLli~g~dD~~WpS~~~a~~i~~rL~~~~~~~~~~~l~Y~~aGH 161 (213)
T PF08840_consen 84 WNEPGLLRSRYAFELADDKA--VEEARIPVEKIKGPILLISGEDDQIWPSSEMAEQIEERLKAAGFPHNVEHLSYPGAGH 161 (213)
T ss_dssp E-TTS-EE-TT-B--TTTGG--GCCCB--GGG--SEEEEEEETT-SSS-HHHHHHHHHHHHHCTT-----EEEEETTB-S
T ss_pred ecCCcceehhhhhhcccccc--cccccccHHHcCCCEEEEEeCCCCccchHHHHHHHHHHHHHhCCCCcceEEEcCCCCc
Confidence 00000000000000000000 011112223569999999999999988553 33333332 2 368899999999
Q ss_pred ccc---c--------------------------CchHHHHHHHHHHHhhcC
Q 022960 251 EFT---S--------------------------HQDELASLVIQFIKANYQ 272 (289)
Q Consensus 251 ~~~---~--------------------------~~~~~~~~i~~fl~~~~~ 272 (289)
.+. . ..++.++.+.+||++++.
T Consensus 162 ~i~~Py~P~~~~~~~~~~~~~~~~GG~~~~~a~A~~dsW~~~l~Fl~~~L~ 212 (213)
T PF08840_consen 162 LIEPPYFPHCRASYHKFIGTPLAWGGEPEAHAKAQEDSWKKILEFLRKHLG 212 (213)
T ss_dssp ---STT-----EEEETTTTEEEE--B-HHHHHHHHHHHHHHHHHHHHHH--
T ss_pred eecCCCCCCcccccccccCCcccCCCChHHHHHHHHHHHHHHHHHHHHHhC
Confidence 842 0 013578899999998874
No 119
>PF12740 Chlorophyllase2: Chlorophyllase enzyme; InterPro: IPR010821 This family consists of several chlorophyllase proteins (3.1.1.14 from EC). Chlorophyllase (Chlase) is the first enzyme involved in chlorophyll degradation and catalyses the hydrolysis of the ester bond to yield chlorophyllide and phytol [, , ].; GO: 0047746 chlorophyllase activity, 0015996 chlorophyll catabolic process
Probab=99.56 E-value=1.3e-12 Score=97.51 Aligned_cols=166 Identities=16% Similarity=0.133 Sum_probs=109.5
Q ss_pred cCCCcEEEEEcCCCCCCCCcchHHHHHHHHHcCccEEEEccccCCCCCCCccccchHHHHHHHHHHHHHHHhc-------
Q 022960 42 TGSKQLVIVCHGFQSTKDRIPMVNLAAALEREGISAFRFDFSGNGESEGSFLYGNYRREAEDLRAIVQDFCAK------- 114 (289)
Q Consensus 42 ~~~~~~iv~~hG~~~~~~~~~~~~~~~~l~~~G~~v~~~d~~G~G~s~~~~~~~~~~~~~~d~~~~i~~l~~~------- 114 (289)
.+.-|++||+||+..... +|..+.+.++++||.|+.+|+...+... -....+++.++++|+.+.
T Consensus 14 ~g~yPVv~f~~G~~~~~s--~Ys~ll~hvAShGyIVV~~d~~~~~~~~-------~~~~~~~~~~vi~Wl~~~L~~~l~~ 84 (259)
T PF12740_consen 14 AGTYPVVLFLHGFLLINS--WYSQLLEHVASHGYIVVAPDLYSIGGPD-------DTDEVASAAEVIDWLAKGLESKLPL 84 (259)
T ss_pred CCCcCEEEEeCCcCCCHH--HHHHHHHHHHhCceEEEEecccccCCCC-------cchhHHHHHHHHHHHHhcchhhccc
Confidence 456799999999995543 4999999999999999999976533211 123355666666665442
Q ss_pred ----CCceEEEEEeChhHHHHHHHHHhC-----CC-ccEEEEeccCCcccccccccccchhHhhhhhcCccccccccccc
Q 022960 115 ----GRVITAIIGHSKGGNAVLLYASKY-----ND-ISIVINISGRFNLKRGIEGRLGLGYLQRIKQNGFIDVRNKKGKL 184 (289)
Q Consensus 115 ----~~~~~~l~G~S~Gg~~a~~~a~~~-----p~-v~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (289)
+..++.|.|||.||-+|..++..+ +. ++++|+++|........ ......
T Consensus 85 ~v~~D~s~l~l~GHSrGGk~Af~~al~~~~~~~~~~~~ali~lDPVdG~~~~~--~~~P~v------------------- 143 (259)
T PF12740_consen 85 GVKPDFSKLALAGHSRGGKVAFAMALGNASSSLDLRFSALILLDPVDGMSKGS--QTEPPV------------------- 143 (259)
T ss_pred cccccccceEEeeeCCCCHHHHHHHhhhcccccccceeEEEEecccccccccc--CCCCcc-------------------
Confidence 456899999999999999988886 33 99999999865322110 000000
Q ss_pred ccccChhhhhhhhccchhhhhcccccCceEEEEEeCCCC---------ccChh-hHHHHHhhCCC-cEEEEEcCCCcccc
Q 022960 185 EYRVTQESLMDRLSTDIHAACHMICQDCRVLTIHGTKDK---------MVPAE-DALEFDKFIPN-HKLHIIEGADHEFT 253 (289)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~i~g~~D~---------~~~~~-~~~~~~~~~~~-~~~~~~~~~gH~~~ 253 (289)
... .....+...|++++-..-+. ..|.. ..+++++.++. +-..+..+.||+-+
T Consensus 144 ---------~~~-------~p~s~~~~~P~lviGtGLg~~~~~~~~~~CaP~g~n~~~Ff~~~~~p~~~~v~~~~GH~d~ 207 (259)
T PF12740_consen 144 ---------LTY-------TPQSFDFSMPALVIGTGLGGEPRNPLFPPCAPAGVNYREFFDECKPPSWHFVAKDYGHMDF 207 (259)
T ss_pred ---------ccC-------cccccCCCCCeEEEecccCcccccccCCCCCCCCCCHHHHHHhcCCCEEEEEeCCCCchHh
Confidence 000 00111236899999776664 22322 45677777754 55666788999943
No 120
>PF10503 Esterase_phd: Esterase PHB depolymerase
Probab=99.56 E-value=6.5e-14 Score=103.24 Aligned_cols=169 Identities=19% Similarity=0.176 Sum_probs=97.8
Q ss_pred CCcEEEEEcCCCCCCCCcchHH--HHHHHHHc-CccEEEEccccCCCCCCCc---c--ccchHHHHHHHHHHHHHHHhc-
Q 022960 44 SKQLVIVCHGFQSTKDRIPMVN--LAAALERE-GISAFRFDFSGNGESEGSF---L--YGNYRREAEDLRAIVQDFCAK- 114 (289)
Q Consensus 44 ~~~~iv~~hG~~~~~~~~~~~~--~~~~l~~~-G~~v~~~d~~G~G~s~~~~---~--~~~~~~~~~d~~~~i~~l~~~- 114 (289)
+.|.||++||.+++... +.. -...|+++ ||.|+.++........... . ...-......+.++++++..+
T Consensus 15 ~~PLVv~LHG~~~~a~~--~~~~s~~~~lAd~~GfivvyP~~~~~~~~~~cw~w~~~~~~~g~~d~~~i~~lv~~v~~~~ 92 (220)
T PF10503_consen 15 PVPLVVVLHGCGQSAED--FAAGSGWNALADREGFIVVYPEQSRRANPQGCWNWFSDDQQRGGGDVAFIAALVDYVAARY 92 (220)
T ss_pred CCCEEEEeCCCCCCHHH--HHhhcCHHHHhhcCCeEEEcccccccCCCCCcccccccccccCccchhhHHHHHHhHhhhc
Confidence 46899999999998754 221 12345554 8999988854221111100 0 000012345677777777666
Q ss_pred --CCceEEEEEeChhHHHHHHHHHhCCC-ccEEEEeccCCcccccccccccchhHhhhhhcCcccccccccccccccChh
Q 022960 115 --GRVITAIIGHSKGGNAVLLYASKYND-ISIVINISGRFNLKRGIEGRLGLGYLQRIKQNGFIDVRNKKGKLEYRVTQE 191 (289)
Q Consensus 115 --~~~~~~l~G~S~Gg~~a~~~a~~~p~-v~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (289)
+.++|++.|+|.||.++..++..+|+ +.++..+++.......- .. .. ...+. .... ..+.
T Consensus 93 ~iD~~RVyv~G~S~Gg~ma~~la~~~pd~faa~a~~sG~~~~~a~~--~~-~a-~~~m~-~g~~------------~~p~ 155 (220)
T PF10503_consen 93 NIDPSRVYVTGLSNGGMMANVLACAYPDLFAAVAVVSGVPYGCAAS--GA-SA-LSAMR-SGPR------------PAPA 155 (220)
T ss_pred ccCCCceeeEEECHHHHHHHHHHHhCCccceEEEeecccccccccC--cc-cH-HHHhh-CCCC------------CChH
Confidence 67799999999999999999999999 88888887753221100 00 00 00010 0000 0000
Q ss_pred hhhhhhccchhhhhcccccCceEEEEEeCCCCccChhhHHHHHhhC
Q 022960 192 SLMDRLSTDIHAACHMICQDCRVLTIHGTKDKMVPAEDALEFDKFI 237 (289)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~P~l~i~g~~D~~~~~~~~~~~~~~~ 237 (289)
....... .... ....|++++||+.|..|.+...+++.+.+
T Consensus 156 ~~~~a~~-----~~g~-~~~~P~~v~hG~~D~tV~~~n~~~~~~q~ 195 (220)
T PF10503_consen 156 AAWGARS-----DAGA-YPGYPRIVFHGTADTTVNPQNADQLVAQW 195 (220)
T ss_pred HHHHhhh-----hccC-CCCCCEEEEecCCCCccCcchHHHHHHHH
Confidence 0000000 0000 01459999999999999999888877665
No 121
>COG3545 Predicted esterase of the alpha/beta hydrolase fold [General function prediction only]
Probab=99.53 E-value=1.4e-12 Score=89.90 Aligned_cols=172 Identities=14% Similarity=0.078 Sum_probs=110.8
Q ss_pred CcEEEEEcCCCCCCCCcchHHHHHHHHHcCccEEEEccccCCCCCCCccccchHHHHHHHHHHHHHHHhcCCceEEEEEe
Q 022960 45 KQLVIVCHGFQSTKDRIPMVNLAAALEREGISAFRFDFSGNGESEGSFLYGNYRREAEDLRAIVQDFCAKGRVITAIIGH 124 (289)
Q Consensus 45 ~~~iv~~hG~~~~~~~~~~~~~~~~l~~~G~~v~~~d~~G~G~s~~~~~~~~~~~~~~d~~~~i~~l~~~~~~~~~l~G~ 124 (289)
.+.+|++||+.++....+...+...|. .+-.+++. ......++++++.+.+.+..+ .++++||+|
T Consensus 2 ~~~~lIVpG~~~Sg~~HWq~~we~~l~----~a~rveq~-------~w~~P~~~dWi~~l~~~v~a~----~~~~vlVAH 66 (181)
T COG3545 2 MTDVLIVPGYGGSGPNHWQSRWESALP----NARRVEQD-------DWEAPVLDDWIARLEKEVNAA----EGPVVLVAH 66 (181)
T ss_pred CceEEEecCCCCCChhHHHHHHHhhCc----cchhcccC-------CCCCCCHHHHHHHHHHHHhcc----CCCeEEEEe
Confidence 357899999999885422222222332 23333333 222335677777777666654 235999999
Q ss_pred ChhHHHHHHHHHhCCC-ccEEEEeccCCcccccccccccchhHhhhhhcCcccccccccccccccChhhhhhhhccchhh
Q 022960 125 SKGGNAVLLYASKYND-ISIVINISGRFNLKRGIEGRLGLGYLQRIKQNGFIDVRNKKGKLEYRVTQESLMDRLSTDIHA 203 (289)
Q Consensus 125 S~Gg~~a~~~a~~~p~-v~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (289)
|+|+..++.++..... |.|+++++|+..-........ .. .+.
T Consensus 67 SLGc~~v~h~~~~~~~~V~GalLVAppd~~~~~~~~~~----~~----------------------------tf~----- 109 (181)
T COG3545 67 SLGCATVAHWAEHIQRQVAGALLVAPPDVSRPEIRPKH----LM----------------------------TFD----- 109 (181)
T ss_pred cccHHHHHHHHHhhhhccceEEEecCCCccccccchhh----cc----------------------------ccC-----
Confidence 9999999999988766 999999998643322110000 00 000
Q ss_pred hhcccccCceEEEEEeCCCCccChhhHHHHHhhCCCcEEEEEcCCCcccccC----chHHHHHHHHHHHh
Q 022960 204 ACHMICQDCRVLTIHGTKDKMVPAEDALEFDKFIPNHKLHIIEGADHEFTSH----QDELASLVIQFIKA 269 (289)
Q Consensus 204 ~~~~~~~~~P~l~i~g~~D~~~~~~~~~~~~~~~~~~~~~~~~~~gH~~~~~----~~~~~~~i~~fl~~ 269 (289)
.....+..-|.+++.+.+|++++++.++.+++.+ ++.++.+..+||..-+. -++....+.+|+.+
T Consensus 110 ~~p~~~lpfps~vvaSrnDp~~~~~~a~~~a~~w-gs~lv~~g~~GHiN~~sG~g~wpeg~~~l~~~~s~ 178 (181)
T COG3545 110 PIPREPLPFPSVVVASRNDPYVSYEHAEDLANAW-GSALVDVGEGGHINAESGFGPWPEGYALLAQLLSR 178 (181)
T ss_pred CCccccCCCceeEEEecCCCCCCHHHHHHHHHhc-cHhheecccccccchhhcCCCcHHHHHHHHHHhhh
Confidence 0011123569999999999999999999999998 66788888899985422 25556666666544
No 122
>PF10230 DUF2305: Uncharacterised conserved protein (DUF2305); InterPro: IPR019363 This entry contains proteins that have no known function.
Probab=99.52 E-value=1.3e-12 Score=100.51 Aligned_cols=105 Identities=15% Similarity=0.174 Sum_probs=87.4
Q ss_pred CcEEEEEcCCCCCCCCcchHHHHHHHHHc---CccEEEEccccCCCCCCC------ccccchHHHHHHHHHHHHHHHhc-
Q 022960 45 KQLVIVCHGFQSTKDRIPMVNLAAALERE---GISAFRFDFSGNGESEGS------FLYGNYRREAEDLRAIVQDFCAK- 114 (289)
Q Consensus 45 ~~~iv~~hG~~~~~~~~~~~~~~~~l~~~---G~~v~~~d~~G~G~s~~~------~~~~~~~~~~~d~~~~i~~l~~~- 114 (289)
+..+|+++|.+|-.+ +|..+.+.|.+. .+.|+++.+.||..+... ...++++++++-..++++.+...
T Consensus 2 ~~li~~IPGNPGlv~--fY~~Fl~~L~~~l~~~~~i~~ish~Gh~~~~~~~~~~~~~~~~sL~~QI~hk~~~i~~~~~~~ 79 (266)
T PF10230_consen 2 RPLIVFIPGNPGLVE--FYEEFLSALYEKLNPQFEILGISHAGHSTSPSNSKFSPNGRLFSLQDQIEHKIDFIKELIPQK 79 (266)
T ss_pred cEEEEEECCCCChHH--HHHHHHHHHHHhCCCCCeeEEecCCCCcCCcccccccCCCCccCHHHHHHHHHHHHHHHhhhh
Confidence 568999999999984 589998888854 699999999999877654 24567888888888888877664
Q ss_pred --CCceEEEEEeChhHHHHHHHHHhCC---C-ccEEEEeccCC
Q 022960 115 --GRVITAIIGHSKGGNAVLLYASKYN---D-ISIVINISGRF 151 (289)
Q Consensus 115 --~~~~~~l~G~S~Gg~~a~~~a~~~p---~-v~~~v~~~~~~ 151 (289)
...+++++|||.|++++++++.+.+ . |.+++++-|..
T Consensus 80 ~~~~~~liLiGHSIGayi~levl~r~~~~~~~V~~~~lLfPTi 122 (266)
T PF10230_consen 80 NKPNVKLILIGHSIGAYIALEVLKRLPDLKFRVKKVILLFPTI 122 (266)
T ss_pred cCCCCcEEEEeCcHHHHHHHHHHHhccccCCceeEEEEeCCcc
Confidence 4568999999999999999999999 3 89999998864
No 123
>PF03403 PAF-AH_p_II: Platelet-activating factor acetylhydrolase, isoform II; PDB: 3F98_B 3F97_B 3D59_A 3F96_A 3D5E_B 3F9C_A.
Probab=99.52 E-value=1.1e-12 Score=105.50 Aligned_cols=178 Identities=15% Similarity=0.181 Sum_probs=101.0
Q ss_pred CCCcEEEEEcCCCCCCCCcchHHHHHHHHHcCccEEEEccccCCCC------CCC------------------c----cc
Q 022960 43 GSKQLVIVCHGFQSTKDRIPMVNLAAALEREGISAFRFDFSGNGES------EGS------------------F----LY 94 (289)
Q Consensus 43 ~~~~~iv~~hG~~~~~~~~~~~~~~~~l~~~G~~v~~~d~~G~G~s------~~~------------------~----~~ 94 (289)
++-|+|||-||++++... |..++..|+++||.|+++|.|..-.. +.. . ..
T Consensus 98 ~~~PvvIFSHGlgg~R~~--yS~~~~eLAS~GyVV~aieHrDgSa~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (379)
T PF03403_consen 98 GKFPVVIFSHGLGGSRTS--YSAICGELASHGYVVAAIEHRDGSAPATYFMRDGSGAEVEPYVVEYLEEEWIPLRDFDPE 175 (379)
T ss_dssp S-EEEEEEE--TT--TTT--THHHHHHHHHTT-EEEEE---SS-SSEEEE-SSHHHHHHT---------EEEE-----GG
T ss_pred CCCCEEEEeCCCCcchhh--HHHHHHHHHhCCeEEEEeccCCCceeEEEeccCCCccccccccccccccceeccccccch
Confidence 567999999999999965 99999999999999999999953211 000 0 00
Q ss_pred c-------chHHHHHHHHHHHHHHHhc-----------------------CCceEEEEEeChhHHHHHHHHHhCCCccEE
Q 022960 95 G-------NYRREAEDLRAIVQDFCAK-----------------------GRVITAIIGHSKGGNAVLLYASKYNDISIV 144 (289)
Q Consensus 95 ~-------~~~~~~~d~~~~i~~l~~~-----------------------~~~~~~l~G~S~Gg~~a~~~a~~~p~v~~~ 144 (289)
. ....-+.++..+++.|.+. +.++++++|||+||..++..+....++++.
T Consensus 176 ~~~~~R~~QL~~R~~Ei~~~l~~L~~i~~G~~~~~~l~~~~~l~~~~grlD~~~i~~~GHSFGGATa~~~l~~d~r~~~~ 255 (379)
T PF03403_consen 176 EEFELRNAQLRQRVAEIQFVLDALEEINSGDPVENVLPSSFDLSQFKGRLDLSRIGLAGHSFGGATALQALRQDTRFKAG 255 (379)
T ss_dssp GHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-----SS--SS-GGGGTT-EEEEEEEEEEETHHHHHHHHHHHH-TT--EE
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccccccCCccCHHHHhhhcchhheeeeecCchHHHHHHHHhhccCcceE
Confidence 0 0011246677777766531 245899999999999999988888779999
Q ss_pred EEeccCCcccccccccccchhHhhhhhcCcccccccccccccccChhhhhhhhccchhhhhcccccCceEEEEEeCCCCc
Q 022960 145 INISGRFNLKRGIEGRLGLGYLQRIKQNGFIDVRNKKGKLEYRVTQESLMDRLSTDIHAACHMICQDCRVLTIHGTKDKM 224 (289)
Q Consensus 145 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~i~g~~D~~ 224 (289)
|+++|+...... . . . ..++.|+|+|.++. +
T Consensus 256 I~LD~W~~Pl~~-------~---------------------------~------------~--~~i~~P~L~InSe~--f 285 (379)
T PF03403_consen 256 ILLDPWMFPLGD-------E---------------------------I------------Y--SKIPQPLLFINSES--F 285 (379)
T ss_dssp EEES---TTS-G-------G---------------------------G------------G--GG--S-EEEEEETT--T
T ss_pred EEeCCcccCCCc-------c---------------------------c------------c--cCCCCCEEEEECcc--c
Confidence 999986431100 0 0 0 02378999998875 2
Q ss_pred cChhhHHHHHhh---CCCcEEEEEcCCCccccc--------------------Cc----hHHHHHHHHHHHhhcC
Q 022960 225 VPAEDALEFDKF---IPNHKLHIIEGADHEFTS--------------------HQ----DELASLVIQFIKANYQ 272 (289)
Q Consensus 225 ~~~~~~~~~~~~---~~~~~~~~~~~~gH~~~~--------------------~~----~~~~~~i~~fl~~~~~ 272 (289)
........+.+. -++..++.+.|+.|.-+. ++ +...+.+.+||++++.
T Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~ti~gt~H~s~sD~~ll~P~~l~~~~~~~g~~dp~~a~~i~~~~~l~FL~~~L~ 360 (379)
T PF03403_consen 286 QWWENIFRMKKVISNNKESRMLTIKGTAHLSFSDFPLLSPWLLGKFLGLKGSIDPERALRINNRASLAFLRRHLG 360 (379)
T ss_dssp --HHHHHHHHTT--TTS-EEEEEETT--GGGGSGGGGTS-HHHHHHTTSS-SS-HHHHHHHHHHHHHHHHHHHHT
T ss_pred CChhhHHHHHHHhccCCCcEEEEECCCcCCCcchhhhhhHHHHHHHhccccCcCHHHHHHHHHHHHHHHHHHhcC
Confidence 223333344332 245788999999997321 12 1356678899998875
No 124
>TIGR03502 lipase_Pla1_cef extracellular lipase, Pla-1/cef family. Members of this protein family are bacterial lipoproteins largely from the Gammaproteobacteria. Characterized members are expressed in extracellularly and have esterase activity. Members include the lipase Pla-1 from Aeromonas hydrophila (AF092033) and CHO cell elongation factor (cef) from Vibrio hollisae
Probab=99.51 E-value=1.5e-13 Score=117.88 Aligned_cols=112 Identities=21% Similarity=0.277 Sum_probs=84.9
Q ss_pred EEeeCCCCceEEEEEeec---------CCCcEEEEEcCCCCCCCCcchHHHHHHHHHcCccEEEEccccCCCCCCC----
Q 022960 25 VVIPNSHGEKLVGILHET---------GSKQLVIVCHGFQSTKDRIPMVNLAAALEREGISAFRFDFSGNGESEGS---- 91 (289)
Q Consensus 25 ~~~~~~~g~~l~~~~~~~---------~~~~~iv~~hG~~~~~~~~~~~~~~~~l~~~G~~v~~~d~~G~G~s~~~---- 91 (289)
+.+...++.++.+..... +..|+||++||++++... |..+++.|.++||+|+++|+||||.|...
T Consensus 420 ~~~~~p~~~~i~~~~~~~g~~~~~~p~~g~P~VVllHG~~g~~~~--~~~lA~~La~~Gy~VIaiDlpGHG~S~~~~~~~ 497 (792)
T TIGR03502 420 VLLTTPNGPVIAAFRAGTGLETFAAPTDGWPVVIYQHGITGAKEN--ALAFAGTLAAAGVATIAIDHPLHGARSFDANAS 497 (792)
T ss_pred eEEEecCcchhhhhhcccccccccCCCCCCcEEEEeCCCCCCHHH--HHHHHHHHHhCCcEEEEeCCCCCCccccccccc
Confidence 344455666655443211 134689999999999865 89999999999999999999999999432
Q ss_pred ------cc-------------ccchHHHHHHHHHHHHHHH------h-------cCCceEEEEEeChhHHHHHHHHHhC
Q 022960 92 ------FL-------------YGNYRREAEDLRAIVQDFC------A-------KGRVITAIIGHSKGGNAVLLYASKY 138 (289)
Q Consensus 92 ------~~-------------~~~~~~~~~d~~~~i~~l~------~-------~~~~~~~l~G~S~Gg~~a~~~a~~~ 138 (289)
.. ..++.+.+.|+..+...+. . .+..+++++||||||.++..++...
T Consensus 498 ~~~a~~~~~~~y~Nl~~l~~aRDn~rQ~v~Dll~L~~~l~~~~~~~~~~~~~~~~~~~~V~~lGHSLGgiig~~~~~~a 576 (792)
T TIGR03502 498 GVNATNANVLAYMNLASLLVARDNLRQSILDLLGLRLSLNGSALAGAPLSGINVIDGSKVSFLGHSLGGIVGTSFIAYA 576 (792)
T ss_pred cccccccCccceeccccccccccCHHHHHHHHHHHHHHHhcccccccccccccCCCCCcEEEEecCHHHHHHHHHHHhc
Confidence 10 1266888899999988886 1 1345899999999999999998753
No 125
>KOG4627 consensus Kynurenine formamidase [Amino acid transport and metabolism]
Probab=99.47 E-value=7.6e-13 Score=93.10 Aligned_cols=183 Identities=13% Similarity=0.150 Sum_probs=121.5
Q ss_pred EEeec-CCCcEEEEEcCCCCCCCC-cchHHHHHHHHHcCccEEEEccccCCCCCCCccccchHHHHHHHHHHHHHHHhc-
Q 022960 38 ILHET-GSKQLVIVCHGFQSTKDR-IPMVNLAAALEREGISAFRFDFSGNGESEGSFLYGNYRREAEDLRAIVQDFCAK- 114 (289)
Q Consensus 38 ~~~~~-~~~~~iv~~hG~~~~~~~-~~~~~~~~~l~~~G~~v~~~d~~G~G~s~~~~~~~~~~~~~~d~~~~i~~l~~~- 114 (289)
.+|++ ...+.+||+||+--.... ..-...+..+.++||+|..+++- .+. ....+.+.+.++...++++.+.
T Consensus 59 DIwg~~~~~klfIfIHGGYW~~g~rk~clsiv~~a~~~gY~vasvgY~---l~~---q~htL~qt~~~~~~gv~filk~~ 132 (270)
T KOG4627|consen 59 DIWGSTNQAKLFIFIHGGYWQEGDRKMCLSIVGPAVRRGYRVASVGYN---LCP---QVHTLEQTMTQFTHGVNFILKYT 132 (270)
T ss_pred EEecCCCCccEEEEEecchhhcCchhcccchhhhhhhcCeEEEEeccC---cCc---ccccHHHHHHHHHHHHHHHHHhc
Confidence 35554 477899999996532211 12344556677789999998763 222 2235666677777777777655
Q ss_pred -CCceEEEEEeChhHHHHHHHHHhC--CCccEEEEeccCCcccccccccccchhHhhhhhcCcccccccccccccccChh
Q 022960 115 -GRVITAIIGHSKGGNAVLLYASKY--NDISIVINISGRFNLKRGIEGRLGLGYLQRIKQNGFIDVRNKKGKLEYRVTQE 191 (289)
Q Consensus 115 -~~~~~~l~G~S~Gg~~a~~~a~~~--p~v~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (289)
..+.+.+-|||.|+.+|+.+..+. |.|.++++.++.+++............ ..+.+
T Consensus 133 ~n~k~l~~gGHSaGAHLa~qav~R~r~prI~gl~l~~GvY~l~EL~~te~g~dl---------------------gLt~~ 191 (270)
T KOG4627|consen 133 ENTKVLTFGGHSAGAHLAAQAVMRQRSPRIWGLILLCGVYDLRELSNTESGNDL---------------------GLTER 191 (270)
T ss_pred ccceeEEEcccchHHHHHHHHHHHhcCchHHHHHHHhhHhhHHHHhCCcccccc---------------------Ccccc
Confidence 556789999999999999987765 449999999998876543322211100 00000
Q ss_pred hhhhhhccchhhhhcccccCceEEEEEeCCCCccChhhHHHHHhhCCCcEEEEEcCCCcc
Q 022960 192 SLMDRLSTDIHAACHMICQDCRVLTIHGTKDKMVPAEDALEFDKFIPNHKLHIIEGADHE 251 (289)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~P~l~i~g~~D~~~~~~~~~~~~~~~~~~~~~~~~~~gH~ 251 (289)
.. +....+.. .. ..++.|+|++.+++|..--.++.+.+.+.+..+.+..+++.+|+
T Consensus 192 ~a-e~~Scdl~-~~--~~v~~~ilVv~~~~espklieQnrdf~~q~~~a~~~~f~n~~hy 247 (270)
T KOG4627|consen 192 NA-ESVSCDLW-EY--TDVTVWILVVAAEHESPKLIEQNRDFADQLRKASFTLFKNYDHY 247 (270)
T ss_pred hh-hhcCccHH-Hh--cCceeeeeEeeecccCcHHHHhhhhHHHHhhhcceeecCCcchh
Confidence 00 00011111 11 13478999999999977667889999999989999999999999
No 126
>PF03959 FSH1: Serine hydrolase (FSH1); InterPro: IPR005645 This entry represents proteins belonging to the AB hydrolase family. It consists of serine hydrolases of unknown specificity [, ] and includes uncharacterised proteins.; PDB: 1YCD_A.
Probab=99.46 E-value=9.1e-13 Score=98.22 Aligned_cols=166 Identities=17% Similarity=0.243 Sum_probs=84.0
Q ss_pred CCcEEEEEcCCCCCCCC--cchHHHHHHHHHcCccEEEEccccC-----CCCC------------CCc-cc-------cc
Q 022960 44 SKQLVIVCHGFQSTKDR--IPMVNLAAALEREGISAFRFDFSGN-----GESE------------GSF-LY-------GN 96 (289)
Q Consensus 44 ~~~~iv~~hG~~~~~~~--~~~~~~~~~l~~~G~~v~~~d~~G~-----G~s~------------~~~-~~-------~~ 96 (289)
.++-||++||++.+... .....+.+.|.+.++.++.+|-|-- |-.. .+. .. ..
T Consensus 3 ~k~riLcLHG~~~na~if~~q~~~l~~~l~~~~~ef~f~dgP~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~ 82 (212)
T PF03959_consen 3 RKPRILCLHGYGQNAEIFRQQTSALRKALKKLDFEFVFVDGPHEVPPGPGIEPFSSEAESAFGDPGPFYSWWDPDDDDHE 82 (212)
T ss_dssp ---EEEEE--TT--HHHHHHHTHHHHHHHHHTT-EEEEE--SEE---GGG-SS---HHHHHHHHTT--EESS---S-SGG
T ss_pred CCceEEEeCCCCcCHHHHHHHHHHHHHHHhhCcEEEEEecCCcccCCcccccccccccccccCCCCcceeeeecCCCccc
Confidence 46789999999999853 1123455556553588888875521 1110 000 00 01
Q ss_pred hHHHHHHHHHHHHHHHhcCCceEEEEEeChhHHHHHHHHHhC---------CCccEEEEeccCCcccccccccccchhHh
Q 022960 97 YRREAEDLRAIVQDFCAKGRVITAIIGHSKGGNAVLLYASKY---------NDISIVINISGRFNLKRGIEGRLGLGYLQ 167 (289)
Q Consensus 97 ~~~~~~d~~~~i~~l~~~~~~~~~l~G~S~Gg~~a~~~a~~~---------p~v~~~v~~~~~~~~~~~~~~~~~~~~~~ 167 (289)
+....+.+..+.+.+.+.+. =..|+|+|.||.+|..++... |.++.+|++++.........
T Consensus 83 ~~~~~~sl~~l~~~i~~~GP-fdGvlGFSQGA~lAa~ll~~~~~~~~~~~~~~~kf~V~~sg~~p~~~~~~--------- 152 (212)
T PF03959_consen 83 YEGLDESLDYLRDYIEENGP-FDGVLGFSQGAALAALLLALQQRGRPDGAHPPFKFAVFISGFPPPDPDYQ--------- 152 (212)
T ss_dssp G---HHHHHHHHHHHHHH----SEEEEETHHHHHHHHHHHHHHHHST--T----SEEEEES----EEE-GT---------
T ss_pred ccCHHHHHHHHHHHHHhcCC-eEEEEeecHHHHHHHHHHHHHHhhcccccCCCceEEEEEcccCCCchhhh---------
Confidence 22222333334444444342 248999999999999888642 23889999988654322100
Q ss_pred hhhhcCcccccccccccccccChhhhhhhhccchhhhhcccccCceEEEEEeCCCCccChhhHHHHHhhCCC-cEEEEEc
Q 022960 168 RIKQNGFIDVRNKKGKLEYRVTQESLMDRLSTDIHAACHMICQDCRVLTIHGTKDKMVPAEDALEFDKFIPN-HKLHIIE 246 (289)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~i~g~~D~~~~~~~~~~~~~~~~~-~~~~~~~ 246 (289)
..+ ...++++|+|.|+|++|.+++++.++.+.+.+.+ .+++..+
T Consensus 153 ---------------------------~~~--------~~~~i~iPtlHv~G~~D~~~~~~~s~~L~~~~~~~~~v~~h~ 197 (212)
T PF03959_consen 153 ---------------------------ELY--------DEPKISIPTLHVIGENDPVVPPERSEALAEMFDPDARVIEHD 197 (212)
T ss_dssp ---------------------------TTT----------TT---EEEEEEETT-SSS-HHHHHHHHHHHHHHEEEEEES
T ss_pred ---------------------------hhh--------ccccCCCCeEEEEeCCCCCcchHHHHHHHHhccCCcEEEEEC
Confidence 000 1114589999999999999999999999999877 7888887
Q ss_pred CCCcccccC
Q 022960 247 GADHEFTSH 255 (289)
Q Consensus 247 ~~gH~~~~~ 255 (289)
+ ||.+...
T Consensus 198 g-GH~vP~~ 205 (212)
T PF03959_consen 198 G-GHHVPRK 205 (212)
T ss_dssp S-SSS----
T ss_pred C-CCcCcCC
Confidence 5 8886533
No 127
>COG2936 Predicted acyl esterases [General function prediction only]
Probab=99.45 E-value=5.4e-12 Score=103.69 Aligned_cols=136 Identities=19% Similarity=0.194 Sum_probs=106.5
Q ss_pred cccceeeEEeeCCCCceEEEEEeecC---CCcEEEEEcCCCCCCC---CcchHHHHH---HHHHcCccEEEEccccCCCC
Q 022960 18 PVVQRRRVVIPNSHGEKLVGILHETG---SKQLVIVCHGFQSTKD---RIPMVNLAA---ALEREGISAFRFDFSGNGES 88 (289)
Q Consensus 18 ~~~~~~~~~~~~~~g~~l~~~~~~~~---~~~~iv~~hG~~~~~~---~~~~~~~~~---~l~~~G~~v~~~d~~G~G~s 88 (289)
.++..+++.++..||++|+..++.|. +.|+++..+-++-... .+......+ .++.+||.|+..|.||.|.|
T Consensus 15 ~~~~~~~v~V~MRDGvrL~~dIy~Pa~~g~~Pvll~~~~~Py~k~~~~~~~~~~~~p~~~~~aa~GYavV~qDvRG~~~S 94 (563)
T COG2936 15 AGYIERDVMVPMRDGVRLAADIYRPAGAGPLPVLLSRTRLPYRKRNGTFGPQLSALPQPAWFAAQGYAVVNQDVRGRGGS 94 (563)
T ss_pred cceeeeeeeEEecCCeEEEEEEEccCCCCCCceeEEeeccccccccccCcchhhcccccceeecCceEEEEecccccccC
Confidence 34677889999999999999888654 6788888882222221 011222334 57888999999999999999
Q ss_pred CCCccccchHHHHHHHHHHHHHHHhc--CCceEEEEEeChhHHHHHHHHHhCCC-ccEEEEeccCCccc
Q 022960 89 EGSFLYGNYRREAEDLRAIVQDFCAK--GRVITAIIGHSKGGNAVLLYASKYND-ISIVINISGRFNLK 154 (289)
Q Consensus 89 ~~~~~~~~~~~~~~d~~~~i~~l~~~--~~~~~~l~G~S~Gg~~a~~~a~~~p~-v~~~v~~~~~~~~~ 154 (289)
.+......- +.++|-.+.|+|+.++ ...+|..+|.|++|...+.+|+..|. +++++..++..+..
T Consensus 95 eG~~~~~~~-~E~~Dg~D~I~Wia~QpWsNG~Vgm~G~SY~g~tq~~~Aa~~pPaLkai~p~~~~~D~y 162 (563)
T COG2936 95 EGVFDPESS-REAEDGYDTIEWLAKQPWSNGNVGMLGLSYLGFTQLAAAALQPPALKAIAPTEGLVDRY 162 (563)
T ss_pred Ccccceecc-ccccchhHHHHHHHhCCccCCeeeeecccHHHHHHHHHHhcCCchheeecccccccccc
Confidence 998765443 5788999999999888 45589999999999999999999877 99999998877643
No 128
>COG3243 PhaC Poly(3-hydroxyalkanoate) synthetase [Lipid metabolism]
Probab=99.43 E-value=3e-12 Score=100.31 Aligned_cols=109 Identities=15% Similarity=0.170 Sum_probs=83.1
Q ss_pred CCcEEEEEcCCCCCCCC---cchHHHHHHHHHcCccEEEEccccCCCCCCCccccchHHHH-HHHHHHHHHHHhc-CCce
Q 022960 44 SKQLVIVCHGFQSTKDR---IPMVNLAAALEREGISAFRFDFSGNGESEGSFLYGNYRREA-EDLRAIVQDFCAK-GRVI 118 (289)
Q Consensus 44 ~~~~iv~~hG~~~~~~~---~~~~~~~~~l~~~G~~v~~~d~~G~G~s~~~~~~~~~~~~~-~d~~~~i~~l~~~-~~~~ 118 (289)
-+++++++|.+....-. ..-..++..|.++|..|+.+++++-..+.. ..++++.+ +++.+.++.+++. +.++
T Consensus 106 ~~~PlLiVpP~iNk~yi~Dl~~~~s~V~~l~~~g~~vfvIsw~nPd~~~~---~~~~edYi~e~l~~aid~v~~itg~~~ 182 (445)
T COG3243 106 LKRPLLIVPPWINKFYILDLSPEKSLVRWLLEQGLDVFVISWRNPDASLA---AKNLEDYILEGLSEAIDTVKDITGQKD 182 (445)
T ss_pred CCCceEeeccccCceeEEeCCCCccHHHHHHHcCCceEEEeccCchHhhh---hccHHHHHHHHHHHHHHHHHHHhCccc
Confidence 35689999987754311 113568889999999999999987555543 33556666 7888888888776 6688
Q ss_pred EEEEEeChhHHHHHHHHHhCCC--ccEEEEeccCCcccc
Q 022960 119 TAIIGHSKGGNAVLLYASKYND--ISIVINISGRFNLKR 155 (289)
Q Consensus 119 ~~l~G~S~Gg~~a~~~a~~~p~--v~~~v~~~~~~~~~~ 155 (289)
|.++|+|.||.++..+++..+. |++++++....++..
T Consensus 183 InliGyCvGGtl~~~ala~~~~k~I~S~T~lts~~DF~~ 221 (445)
T COG3243 183 INLIGYCVGGTLLAAALALMAAKRIKSLTLLTSPVDFSH 221 (445)
T ss_pred cceeeEecchHHHHHHHHhhhhcccccceeeecchhhcc
Confidence 9999999999999998888875 999999887776543
No 129
>KOG2112 consensus Lysophospholipase [Lipid transport and metabolism]
Probab=99.42 E-value=4.6e-12 Score=90.07 Aligned_cols=175 Identities=19% Similarity=0.220 Sum_probs=117.9
Q ss_pred CcEEEEEcCCCCCCCCcchHHHHHHHHHcCccEEEEccccCCCC--------C----------CCccccchHHHHHHHHH
Q 022960 45 KQLVIVCHGFQSTKDRIPMVNLAAALEREGISAFRFDFSGNGES--------E----------GSFLYGNYRREAEDLRA 106 (289)
Q Consensus 45 ~~~iv~~hG~~~~~~~~~~~~~~~~l~~~G~~v~~~d~~G~G~s--------~----------~~~~~~~~~~~~~d~~~ 106 (289)
..+||++||.+.+... |..+.+.|.-.+...+++.-|-.-.+ . ...+.......++.+..
T Consensus 3 ~atIi~LHglGDsg~~--~~~~~~~l~l~NiKwIcP~aP~rpvt~~~G~~~~aWfd~~~~~~~~~~d~~~~~~aa~~i~~ 80 (206)
T KOG2112|consen 3 TATIIFLHGLGDSGSG--WAQFLKQLPLPNIKWICPTAPSRPVTLNGGAFMNAWFDIMELSSDAPEDEEGLHRAADNIAN 80 (206)
T ss_pred eEEEEEEecCCCCCcc--HHHHHHcCCCCCeeEEcCCCCCCcccccCCCcccceecceeeCcccchhhhHHHHHHHHHHH
Confidence 4589999999999976 77777777666677777744421111 0 11123344455666777
Q ss_pred HHHHHHhc--CCceEEEEEeChhHHHHHHHHHhCCC-ccEEEEeccCCccc-ccccccccchhHhhhhhcCccccccccc
Q 022960 107 IVQDFCAK--GRVITAIIGHSKGGNAVLLYASKYND-ISIVINISGRFNLK-RGIEGRLGLGYLQRIKQNGFIDVRNKKG 182 (289)
Q Consensus 107 ~i~~l~~~--~~~~~~l~G~S~Gg~~a~~~a~~~p~-v~~~v~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (289)
++++.... ..+++.+-|.|+||.+++..+..++. +.+++..++..... ..+.....
T Consensus 81 Li~~e~~~Gi~~~rI~igGfs~G~a~aL~~~~~~~~~l~G~~~~s~~~p~~~~~~~~~~~-------------------- 140 (206)
T KOG2112|consen 81 LIDNEPANGIPSNRIGIGGFSQGGALALYSALTYPKALGGIFALSGFLPRASIGLPGWLP-------------------- 140 (206)
T ss_pred HHHHHHHcCCCccceeEcccCchHHHHHHHHhccccccceeeccccccccchhhccCCcc--------------------
Confidence 77766665 45689999999999999999999987 88888777654421 11100000
Q ss_pred ccccccChhhhhhhhccchhhhhcccccCceEEEEEeCCCCccChhhHHHHHhhC----CCcEEEEEcCCCcccccCchH
Q 022960 183 KLEYRVTQESLMDRLSTDIHAACHMICQDCRVLTIHGTKDKMVPAEDALEFDKFI----PNHKLHIIEGADHEFTSHQDE 258 (289)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~i~g~~D~~~~~~~~~~~~~~~----~~~~~~~~~~~gH~~~~~~~~ 258 (289)
. .+ ..|++..||+.|++||....+...+.+ ..++++.++|.+|... .+
T Consensus 141 ----------------~--------~~-~~~i~~~Hg~~d~~vp~~~g~~s~~~l~~~~~~~~f~~y~g~~h~~~---~~ 192 (206)
T KOG2112|consen 141 ----------------G--------VN-YTPILLCHGTADPLVPFRFGEKSAQFLKSLGVRVTFKPYPGLGHSTS---PQ 192 (206)
T ss_pred ----------------c--------cC-cchhheecccCCceeehHHHHHHHHHHHHcCCceeeeecCCcccccc---HH
Confidence 0 00 469999999999999987665544433 3478999999999852 34
Q ss_pred HHHHHHHHHHh
Q 022960 259 LASLVIQFIKA 269 (289)
Q Consensus 259 ~~~~i~~fl~~ 269 (289)
-.+.+..|+++
T Consensus 193 e~~~~~~~~~~ 203 (206)
T KOG2112|consen 193 ELDDLKSWIKT 203 (206)
T ss_pred HHHHHHHHHHH
Confidence 45667778775
No 130
>COG4099 Predicted peptidase [General function prediction only]
Probab=99.40 E-value=3.2e-12 Score=95.14 Aligned_cols=154 Identities=18% Similarity=0.210 Sum_probs=94.2
Q ss_pred CCCceEEEEEeecC------CC-cEEEEEcCCCCCCCCcchHHHHHHHHHcCccEEEEccccCC---CCCC-C--c--cc
Q 022960 30 SHGEKLVGILHETG------SK-QLVIVCHGFQSTKDRIPMVNLAAALEREGISAFRFDFSGNG---ESEG-S--F--LY 94 (289)
Q Consensus 30 ~~g~~l~~~~~~~~------~~-~~iv~~hG~~~~~~~~~~~~~~~~l~~~G~~v~~~d~~G~G---~s~~-~--~--~~ 94 (289)
.-|.++.|.++.|+ +- |.+||+||.|..+.. -.. .+.+ |.-.++.+.+-.+ .++. . + ..
T Consensus 169 ~tgneLkYrly~Pkdy~pdkky~PLvlfLHgagq~g~d-n~~----~l~s-g~gaiawa~pedqcfVlAPQy~~if~d~e 242 (387)
T COG4099 169 STGNELKYRLYTPKDYAPDKKYYPLVLFLHGAGQGGSD-NDK----VLSS-GIGAIAWAGPEDQCFVLAPQYNPIFADSE 242 (387)
T ss_pred ccCceeeEEEecccccCCCCccccEEEEEecCCCCCch-hhh----hhhc-CccceeeecccCceEEEcccccccccccc
Confidence 45778988888663 33 899999999987653 111 2221 2333333333222 0000 0 0 00
Q ss_pred cchHHHHHHHHHHHH-HHHhc---CCceEEEEEeChhHHHHHHHHHhCCC-ccEEEEeccCCcccccccccccchhHhhh
Q 022960 95 GNYRREAEDLRAIVQ-DFCAK---GRVITAIIGHSKGGNAVLLYASKYND-ISIVINISGRFNLKRGIEGRLGLGYLQRI 169 (289)
Q Consensus 95 ~~~~~~~~d~~~~i~-~l~~~---~~~~~~l~G~S~Gg~~a~~~a~~~p~-v~~~v~~~~~~~~~~~~~~~~~~~~~~~~ 169 (289)
............+++ .+.++ +.+||+++|.|+||+.++.++.++|+ +.+.+++++.-+.....
T Consensus 243 ~~t~~~l~~~idli~~vlas~ynID~sRIYviGlSrG~~gt~al~~kfPdfFAaa~~iaG~~d~v~lv------------ 310 (387)
T COG4099 243 EKTLLYLIEKIDLILEVLASTYNIDRSRIYVIGLSRGGFGTWALAEKFPDFFAAAVPIAGGGDRVYLV------------ 310 (387)
T ss_pred cccchhHHHHHHHHHHHHhhccCcccceEEEEeecCcchhhHHHHHhCchhhheeeeecCCCchhhhh------------
Confidence 011111222233333 33333 56799999999999999999999999 99999999854421000
Q ss_pred hhcCcccccccccccccccChhhhhhhhccchhhhhcccccCceEEEEEeCCCCccChhhHHHHHhhCC
Q 022960 170 KQNGFIDVRNKKGKLEYRVTQESLMDRLSTDIHAACHMICQDCRVLTIHGTKDKMVPAEDALEFDKFIP 238 (289)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~i~g~~D~~~~~~~~~~~~~~~~ 238 (289)
.. ..+.|+.++|+.+|+++|.+.++-+.+.+.
T Consensus 311 -------------------------~~------------lk~~piWvfhs~dDkv~Pv~nSrv~y~~lk 342 (387)
T COG4099 311 -------------------------RT------------LKKAPIWVFHSSDDKVIPVSNSRVLYERLK 342 (387)
T ss_pred -------------------------hh------------hccCceEEEEecCCCccccCcceeehHHHH
Confidence 00 116899999999999999998776665554
No 131
>PRK04940 hypothetical protein; Provisional
Probab=99.38 E-value=7.5e-11 Score=83.25 Aligned_cols=173 Identities=15% Similarity=0.138 Sum_probs=98.6
Q ss_pred EEEEcCCCCCCCCcchHHHHHHHH--HcCccEEEEccccCCCCCCCccccchHHHHHHHHHHHHHHHhcC-CceEEEEEe
Q 022960 48 VIVCHGFQSTKDRIPMVNLAAALE--REGISAFRFDFSGNGESEGSFLYGNYRREAEDLRAIVQDFCAKG-RVITAIIGH 124 (289)
Q Consensus 48 iv~~hG~~~~~~~~~~~~~~~~l~--~~G~~v~~~d~~G~G~s~~~~~~~~~~~~~~d~~~~i~~l~~~~-~~~~~l~G~ 124 (289)
|+++||+.++..+. ..=++.+. .-+++++ +++ .......+..+.+.+..+...+ .+++.|||.
T Consensus 2 IlYlHGF~SS~~S~--~~Ka~~l~~~~p~~~~~--~l~----------~~~P~~a~~~l~~~i~~~~~~~~~~~~~liGS 67 (180)
T PRK04940 2 IIYLHGFDSTSPGN--HEKVLQLQFIDPDVRLI--SYS----------TLHPKHDMQHLLKEVDKMLQLSDDERPLICGV 67 (180)
T ss_pred EEEeCCCCCCCCcc--HHHHHhheeeCCCCeEE--ECC----------CCCHHHHHHHHHHHHHHhhhccCCCCcEEEEe
Confidence 79999999988651 11111221 1112222 221 0122333344555554332221 246899999
Q ss_pred ChhHHHHHHHHHhCCCccEEEEeccCCcccccccccccchhHhhhhhcCcccccccccccccccChhhhhhhhccchhhh
Q 022960 125 SKGGNAVLLYASKYNDISIVINISGRFNLKRGIEGRLGLGYLQRIKQNGFIDVRNKKGKLEYRVTQESLMDRLSTDIHAA 204 (289)
Q Consensus 125 S~Gg~~a~~~a~~~p~v~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (289)
|+||+.|..++.++. + ..|+++|.+.....+....+.. .. ...++.. ..+.+.
T Consensus 68 SLGGyyA~~La~~~g-~-~aVLiNPAv~P~~~L~~~ig~~-----------------~~-y~~~~~~-h~~eL~------ 120 (180)
T PRK04940 68 GLGGYWAERIGFLCG-I-RQVIFNPNLFPEENMEGKIDRP-----------------EE-YADIATK-CVTNFR------ 120 (180)
T ss_pred ChHHHHHHHHHHHHC-C-CEEEECCCCChHHHHHHHhCCC-----------------cc-hhhhhHH-HHHHhh------
Confidence 999999999999875 4 5566888776644333222110 00 0011111 111111
Q ss_pred hcccccCceEEEEEeCCCCccChhhHHHHHhhCCCc-EEEEEcCCCcccccCchHHHHHHHHHHH
Q 022960 205 CHMICQDCRVLTIHGTKDKMVPAEDALEFDKFIPNH-KLHIIEGADHEFTSHQDELASLVIQFIK 268 (289)
Q Consensus 205 ~~~~~~~~P~l~i~g~~D~~~~~~~~~~~~~~~~~~-~~~~~~~~gH~~~~~~~~~~~~i~~fl~ 268 (289)
.+-.-..+++..+.|++.+...+...+ .++ +..+.+|+.|.+. +-++....|.+|++
T Consensus 121 ---~~~p~r~~vllq~gDEvLDyr~a~~~y---~~~y~~~v~~GGdH~f~-~fe~~l~~I~~F~~ 178 (180)
T PRK04940 121 ---EKNRDRCLVILSRNDEVLDSQRTAEEL---HPYYEIVWDEEQTHKFK-NISPHLQRIKAFKT 178 (180)
T ss_pred ---hcCcccEEEEEeCCCcccCHHHHHHHh---ccCceEEEECCCCCCCC-CHHHHHHHHHHHHh
Confidence 111335689999999999877766544 444 6888999888863 35678889999984
No 132
>PF07224 Chlorophyllase: Chlorophyllase; InterPro: IPR010821 This family consists of several chlorophyllase proteins (3.1.1.14 from EC). Chlorophyllase (Chlase) is the first enzyme involved in chlorophyll degradation and catalyses the hydrolysis of the ester bond to yield chlorophyllide and phytol [, , ].; GO: 0047746 chlorophyllase activity, 0015996 chlorophyll catabolic process
Probab=99.38 E-value=1.5e-11 Score=90.22 Aligned_cols=103 Identities=18% Similarity=0.233 Sum_probs=80.4
Q ss_pred cCCCcEEEEEcCCCCCCCCcchHHHHHHHHHcCccEEEEccccCCCCCCCccccchHHHHHHHHHHHHHHHhc-------
Q 022960 42 TGSKQLVIVCHGFQSTKDRIPMVNLAAALEREGISAFRFDFSGNGESEGSFLYGNYRREAEDLRAIVQDFCAK------- 114 (289)
Q Consensus 42 ~~~~~~iv~~hG~~~~~~~~~~~~~~~~l~~~G~~v~~~d~~G~G~s~~~~~~~~~~~~~~d~~~~i~~l~~~------- 114 (289)
.|.-|+|+|+||+.-.. .+|..+...++++||.|+++++-.--. + +-.+.+++..++++|+.+.
T Consensus 43 ~G~yPVilF~HG~~l~n--s~Ys~lL~HIASHGfIVVAPQl~~~~~---p----~~~~Ei~~aa~V~~WL~~gL~~~Lp~ 113 (307)
T PF07224_consen 43 AGTYPVILFLHGFNLYN--SFYSQLLAHIASHGFIVVAPQLYTLFP---P----DGQDEIKSAASVINWLPEGLQHVLPE 113 (307)
T ss_pred CCCccEEEEeechhhhh--HHHHHHHHHHhhcCeEEEechhhcccC---C----CchHHHHHHHHHHHHHHhhhhhhCCC
Confidence 34679999999999876 469999999999999999999874211 1 1134467777777777543
Q ss_pred ----CCceEEEEEeChhHHHHHHHHHhC-CC--ccEEEEeccCCcc
Q 022960 115 ----GRVITAIIGHSKGGNAVLLYASKY-ND--ISIVINISGRFNL 153 (289)
Q Consensus 115 ----~~~~~~l~G~S~Gg~~a~~~a~~~-p~--v~~~v~~~~~~~~ 153 (289)
+..++.++|||.||-.|..+|..+ .+ +.++|.++|....
T Consensus 114 ~V~~nl~klal~GHSrGGktAFAlALg~a~~lkfsaLIGiDPV~G~ 159 (307)
T PF07224_consen 114 NVEANLSKLALSGHSRGGKTAFALALGYATSLKFSALIGIDPVAGT 159 (307)
T ss_pred CcccccceEEEeecCCccHHHHHHHhcccccCchhheecccccCCC
Confidence 467999999999999999999877 34 8899999886543
No 133
>COG4814 Uncharacterized protein with an alpha/beta hydrolase fold [General function prediction only]
Probab=99.37 E-value=6e-11 Score=86.52 Aligned_cols=201 Identities=16% Similarity=0.223 Sum_probs=126.6
Q ss_pred EEEEEcCCCCCCCCcchHHHHHHHHHcC-----ccEEEEccccC----CCCCCC-----------ccccchHHHHHHHHH
Q 022960 47 LVIVCHGFQSTKDRIPMVNLAAALEREG-----ISAFRFDFSGN----GESEGS-----------FLYGNYRREAEDLRA 106 (289)
Q Consensus 47 ~iv~~hG~~~~~~~~~~~~~~~~l~~~G-----~~v~~~d~~G~----G~s~~~-----------~~~~~~~~~~~d~~~ 106 (289)
+.||+||.+|+..+ ...++.+|.+.+ --++.+|--|- |.-+.. ....+..++...+..
T Consensus 47 PTIfIhGsgG~asS--~~~Mv~ql~~~~~~~~e~Lt~~V~~dgslk~tGk~~Kd~~nP~I~~gfe~n~~s~~~~s~wlk~ 124 (288)
T COG4814 47 PTIFIHGSGGTASS--LNGMVNQLLPDYKAGTESLTMTVDVDGSLKVTGKISKDAKNPIIEFGFEDNTASGLDQSKWLKK 124 (288)
T ss_pred ceEEEecCCCChhH--HHHHHHHhhhcccccccceEEEEcCCCcEEEeeeecccCCCCeEEEEEecCcCchhhHHHHHHH
Confidence 78999999999976 888999998874 12556666552 111110 112345667889999
Q ss_pred HHHHHHhc-CCceEEEEEeChhHHHHHHHHHhC------CCccEEEEeccCCcccccccccccchhHhhhhhcCcccccc
Q 022960 107 IVQDFCAK-GRVITAIIGHSKGGNAVLLYASKY------NDISIVINISGRFNLKRGIEGRLGLGYLQRIKQNGFIDVRN 179 (289)
Q Consensus 107 ~i~~l~~~-~~~~~~l~G~S~Gg~~a~~~a~~~------p~v~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (289)
++.+|.++ ++.++.++||||||.-...++..+ |.+..+|.+++++.........-. . .+...
T Consensus 125 ~msyL~~~Y~i~k~n~VGhSmGg~~~~~Y~~~yg~dks~P~lnK~V~l~gpfN~~~l~~de~v---~-~v~~~------- 193 (288)
T COG4814 125 AMSYLQKHYNIPKFNAVGHSMGGLGLTYYMIDYGDDKSLPPLNKLVSLAGPFNVGNLVPDETV---T-DVLKD------- 193 (288)
T ss_pred HHHHHHHhcCCceeeeeeeccccHHHHHHHHHhcCCCCCcchhheEEecccccccccCCCcch---h-eeecc-------
Confidence 99999888 888999999999999999999875 558999999988772111100000 0 00000
Q ss_pred cccccccccChhhhhhhhccchhhhhcccccCceEEEEEeCCC------CccChhhHHHHHhhCCCc----EEEEE--cC
Q 022960 180 KKGKLEYRVTQESLMDRLSTDIHAACHMICQDCRVLTIHGTKD------KMVPAEDALEFDKFIPNH----KLHII--EG 247 (289)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~i~g~~D------~~~~~~~~~~~~~~~~~~----~~~~~--~~ 247 (289)
... .......+.+.. ....+...+.+|.|.|+-| ..||...+...+..+++. .-.++ ++
T Consensus 194 -~~~----~~~t~y~~y~~~----n~k~v~~~~evl~IaGDl~dg~~tDG~Vp~assls~~~lf~~~~ksy~e~~~~Gk~ 264 (288)
T COG4814 194 -GPG----LIKTPYYDYIAK----NYKKVSPNTEVLLIAGDLDDGKQTDGAVPWASSLSIYHLFKKNGKSYIESLYKGKD 264 (288)
T ss_pred -Ccc----ccCcHHHHHHHh----cceeCCCCcEEEEEecccccCCcCCCceechHhHHHHHHhccCcceeEEEeeeCCc
Confidence 000 000111111111 1111233678999999854 467777777777766541 22233 45
Q ss_pred CCcccccCchHHHHHHHHHHHh
Q 022960 248 ADHEFTSHQDELASLVIQFIKA 269 (289)
Q Consensus 248 ~gH~~~~~~~~~~~~i~~fl~~ 269 (289)
+.|.-+.+.+.+...+..||-+
T Consensus 265 a~Hs~lhen~~v~~yv~~FLw~ 286 (288)
T COG4814 265 ARHSKLHENPTVAKYVKNFLWE 286 (288)
T ss_pred chhhccCCChhHHHHHHHHhhc
Confidence 7898777778888999999853
No 134
>COG1505 Serine proteases of the peptidase family S9A [Amino acid transport and metabolism]
Probab=99.35 E-value=1.8e-11 Score=99.72 Aligned_cols=240 Identities=13% Similarity=0.058 Sum_probs=159.0
Q ss_pred CcccceeeEEeeCCCCceEEEEEeecC----CCcEEEEEcCCCCCCCCcchHHHHHHHHHcCccEEEEccccCCCCCCCc
Q 022960 17 DPVVQRRRVVIPNSHGEKLVGILHETG----SKQLVIVCHGFQSTKDRIPMVNLAAALEREGISAFRFDFSGNGESEGSF 92 (289)
Q Consensus 17 ~~~~~~~~~~~~~~~g~~l~~~~~~~~----~~~~iv~~hG~~~~~~~~~~~~~~~~l~~~G~~v~~~d~~G~G~s~~~~ 92 (289)
...+..++....+.||++|.|++...+ +.|++|+--|+...+....|......+.++|...+..+.||-|+=...-
T Consensus 389 a~~~~veQ~~atSkDGT~IPYFiv~K~~~~d~~pTll~aYGGF~vsltP~fs~~~~~WLerGg~~v~ANIRGGGEfGp~W 468 (648)
T COG1505 389 ADNYEVEQFFATSKDGTRIPYFIVRKGAKKDENPTLLYAYGGFNISLTPRFSGSRKLWLERGGVFVLANIRGGGEFGPEW 468 (648)
T ss_pred ccCceEEEEEEEcCCCccccEEEEecCCcCCCCceEEEeccccccccCCccchhhHHHHhcCCeEEEEecccCCccCHHH
Confidence 346778888889999999999877522 5788887777666555445666668888899999999999987654322
Q ss_pred c----ccchHHHHHHHHHHHHHHHhcCC---ceEEEEEeChhHHHHHHHHHhCCC-ccEEEEeccCCcccccccccccch
Q 022960 93 L----YGNYRREAEDLRAIVQDFCAKGR---VITAIIGHSKGGNAVLLYASKYND-ISIVINISGRFNLKRGIEGRLGLG 164 (289)
Q Consensus 93 ~----~~~~~~~~~d~~~~i~~l~~~~~---~~~~l~G~S~Gg~~a~~~a~~~p~-v~~~v~~~~~~~~~~~~~~~~~~~ 164 (289)
. ..+-....+|..++.+.|.++++ +++.+.|-|-||.+....+.+.|+ +.++|+--|.+++-+.-.-..+..
T Consensus 469 H~Aa~k~nrq~vfdDf~AVaedLi~rgitspe~lgi~GgSNGGLLvg~alTQrPelfgA~v~evPllDMlRYh~l~aG~s 548 (648)
T COG1505 469 HQAGMKENKQNVFDDFIAVAEDLIKRGITSPEKLGIQGGSNGGLLVGAALTQRPELFGAAVCEVPLLDMLRYHLLTAGSS 548 (648)
T ss_pred HHHHhhhcchhhhHHHHHHHHHHHHhCCCCHHHhhhccCCCCceEEEeeeccChhhhCceeeccchhhhhhhcccccchh
Confidence 1 11223446899999999988854 689999999999999988899999 888888778776544332233333
Q ss_pred hHhhhhhcCcccccccccccccccChhhhhhhhccchhhhhcccccCceEEEEEeCCCCccChhhHHHHHhhCCC--c--
Q 022960 165 YLQRIKQNGFIDVRNKKGKLEYRVTQESLMDRLSTDIHAACHMICQDCRVLTIHGTKDKMVPAEDALEFDKFIPN--H-- 240 (289)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~i~g~~D~~~~~~~~~~~~~~~~~--~-- 240 (289)
|...... +-.++................-..-.|+||-.+.+|..|.|.++++++..+.. .
T Consensus 549 W~~EYG~---------------Pd~P~d~~~l~~YSPy~nl~~g~kYP~~LITTs~~DDRVHPaHarKfaa~L~e~~~pv 613 (648)
T COG1505 549 WIAEYGN---------------PDDPEDRAFLLAYSPYHNLKPGQKYPPTLITTSLHDDRVHPAHARKFAAKLQEVGAPV 613 (648)
T ss_pred hHhhcCC---------------CCCHHHHHHHHhcCchhcCCccccCCCeEEEcccccccccchHHHHHHHHHHhcCCce
Confidence 3222111 11122222222223333333223356999999999999999999998887743 2
Q ss_pred EEEEEcCCCcccccCchH---HHHHHHHHHHhhc
Q 022960 241 KLHIIEGADHEFTSHQDE---LASLVIQFIKANY 271 (289)
Q Consensus 241 ~~~~~~~~gH~~~~~~~~---~~~~i~~fl~~~~ 271 (289)
-+.+-.++||.--.+..+ -...+..||.+.+
T Consensus 614 ~~~e~t~gGH~g~~~~~~~A~~~a~~~afl~r~L 647 (648)
T COG1505 614 LLREETKGGHGGAAPTAEIARELADLLAFLLRTL 647 (648)
T ss_pred EEEeecCCcccCCCChHHHHHHHHHHHHHHHHhh
Confidence 333334689985433333 3444556666544
No 135
>PRK10252 entF enterobactin synthase subunit F; Provisional
Probab=99.34 E-value=3e-11 Score=113.83 Aligned_cols=218 Identities=10% Similarity=0.071 Sum_probs=126.6
Q ss_pred cCCCcEEEEEcCCCCCCCCcchHHHHHHHHHcCccEEEEccccCCCCCCCccccchHHHHHHHHHHHHHHHhcCCceEEE
Q 022960 42 TGSKQLVIVCHGFQSTKDRIPMVNLAAALEREGISAFRFDFSGNGESEGSFLYGNYRREAEDLRAIVQDFCAKGRVITAI 121 (289)
Q Consensus 42 ~~~~~~iv~~hG~~~~~~~~~~~~~~~~l~~~G~~v~~~d~~G~G~s~~~~~~~~~~~~~~d~~~~i~~l~~~~~~~~~l 121 (289)
.+++++++++||++++. +.|..+.+.|.. ++.|+.++.+|++.+. ....+++++++++.+.++.+. ...++++
T Consensus 1065 ~~~~~~l~~lh~~~g~~--~~~~~l~~~l~~-~~~v~~~~~~g~~~~~--~~~~~l~~la~~~~~~i~~~~--~~~p~~l 1137 (1296)
T PRK10252 1065 EGDGPTLFCFHPASGFA--WQFSVLSRYLDP-QWSIYGIQSPRPDGPM--QTATSLDEVCEAHLATLLEQQ--PHGPYHL 1137 (1296)
T ss_pred cCCCCCeEEecCCCCch--HHHHHHHHhcCC-CCcEEEEECCCCCCCC--CCCCCHHHHHHHHHHHHHhhC--CCCCEEE
Confidence 34567899999999988 459999998876 4999999999998653 234577888888888887652 2347999
Q ss_pred EEeChhHHHHHHHHHh---CCC-ccEEEEeccCCccccccccc----ccchhHhhhhh--cCcccccccccccccccChh
Q 022960 122 IGHSKGGNAVLLYASK---YND-ISIVINISGRFNLKRGIEGR----LGLGYLQRIKQ--NGFIDVRNKKGKLEYRVTQE 191 (289)
Q Consensus 122 ~G~S~Gg~~a~~~a~~---~p~-v~~~v~~~~~~~~~~~~~~~----~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 191 (289)
+|||+||.+|..+|.+ .++ +..++++++........... ........... ........ .. .......
T Consensus 1138 ~G~S~Gg~vA~e~A~~l~~~~~~v~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-~~~~~~~ 1214 (1296)
T PRK10252 1138 LGYSLGGTLAQGIAARLRARGEEVAFLGLLDTWPPETQNWREKEANGLDPEVLAEIDREREAFLAAQQ--GS-LSTELFT 1214 (1296)
T ss_pred EEechhhHHHHHHHHHHHHcCCceeEEEEecCCCcccccccccccccCChhhhhhhhhhHHHHHHhhh--cc-ccHHHHH
Confidence 9999999999999886 355 88998887643211000000 00000000000 00000000 00 0000001
Q ss_pred hhhhhhccch--hhhhcccccCceEEEEEeCCCCccChhhHHHHHhhCCCcEEEEEcCCCcccccCchHHHHHHHHHHHh
Q 022960 192 SLMDRLSTDI--HAACHMICQDCRVLTIHGTKDKMVPAEDALEFDKFIPNHKLHIIEGADHEFTSHQDELASLVIQFIKA 269 (289)
Q Consensus 192 ~~~~~~~~~~--~~~~~~~~~~~P~l~i~g~~D~~~~~~~~~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~i~~fl~~ 269 (289)
.+...+.... ........+.+|++++.+..|...+......+.+...+.+...++ ++|+.+..++. ...+.+++.+
T Consensus 1215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~v~-g~H~~~~~~~~-~~~~~~~l~~ 1292 (1296)
T PRK10252 1215 TIEGNYADAVRLLTTAHSVPFDGKATLFVAERTLQEGMSPEQAWSPWIAELDVYRQD-CAHVDIISPEA-FEKIGPILRA 1292 (1296)
T ss_pred HHHHHHHHHHHHHHhccCCcccCceEEEEcCCCCcccCCcccchhhhcCCCEEEECC-CCHHHHCCcHH-HHHHHHHHHH
Confidence 1111111110 001112244789999999998766555555565555567777786 58997654443 3555556655
Q ss_pred hc
Q 022960 270 NY 271 (289)
Q Consensus 270 ~~ 271 (289)
.+
T Consensus 1293 ~l 1294 (1296)
T PRK10252 1293 TL 1294 (1296)
T ss_pred Hh
Confidence 43
No 136
>COG3509 LpqC Poly(3-hydroxybutyrate) depolymerase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.34 E-value=2e-10 Score=86.10 Aligned_cols=126 Identities=21% Similarity=0.172 Sum_probs=85.8
Q ss_pred eeEEeeCCCCceEEEEEeecC----CCcEEEEEcCCCCCCCCcchHHHH--HHHHHc-CccEEEEcc-cc------CCCC
Q 022960 23 RRVVIPNSHGEKLVGILHETG----SKQLVIVCHGFQSTKDRIPMVNLA--AALERE-GISAFRFDF-SG------NGES 88 (289)
Q Consensus 23 ~~~~~~~~~g~~l~~~~~~~~----~~~~iv~~hG~~~~~~~~~~~~~~--~~l~~~-G~~v~~~d~-~G------~G~s 88 (289)
+..++. .+|.+..++++.|. ..|.||++||.+++... +.... +.|+++ ||-|+.+|- ++ .+.+
T Consensus 36 ~~~s~~-~~g~~r~y~l~vP~g~~~~apLvv~LHG~~~sgag--~~~~sg~d~lAd~~gFlV~yPdg~~~~wn~~~~~~~ 112 (312)
T COG3509 36 SVASFD-VNGLKRSYRLYVPPGLPSGAPLVVVLHGSGGSGAG--QLHGTGWDALADREGFLVAYPDGYDRAWNANGCGNW 112 (312)
T ss_pred Cccccc-cCCCccceEEEcCCCCCCCCCEEEEEecCCCChHH--hhcccchhhhhcccCcEEECcCccccccCCCccccc
Confidence 344454 35667777777553 45799999999988753 33332 455544 899998842 22 2222
Q ss_pred CCCccccchHHHHHHHHHHHHHHHhc---CCceEEEEEeChhHHHHHHHHHhCCC-ccEEEEeccCC
Q 022960 89 EGSFLYGNYRREAEDLRAIVQDFCAK---GRVITAIIGHSKGGNAVLLYASKYND-ISIVINISGRF 151 (289)
Q Consensus 89 ~~~~~~~~~~~~~~d~~~~i~~l~~~---~~~~~~l~G~S~Gg~~a~~~a~~~p~-v~~~v~~~~~~ 151 (289)
..+.....=.+.+..+.+++..+..+ +..+|++.|.|-||.++..+++.+|+ +.++..+++..
T Consensus 113 ~~p~~~~~g~ddVgflr~lva~l~~~~gidp~RVyvtGlS~GG~Ma~~lac~~p~~faa~A~VAg~~ 179 (312)
T COG3509 113 FGPADRRRGVDDVGFLRALVAKLVNEYGIDPARVYVTGLSNGGRMANRLACEYPDIFAAIAPVAGLL 179 (312)
T ss_pred CCcccccCCccHHHHHHHHHHHHHHhcCcCcceEEEEeeCcHHHHHHHHHhcCcccccceeeeeccc
Confidence 22221111134467888888888777 55699999999999999999999999 88888887755
No 137
>KOG1553 consensus Predicted alpha/beta hydrolase BAT5 [General function prediction only]
Probab=99.32 E-value=8.2e-12 Score=94.93 Aligned_cols=126 Identities=23% Similarity=0.226 Sum_probs=88.0
Q ss_pred eeeEEeeCCCCceEEEEEeec-----C-CCcEEEEEcCCCCCCCCcchHHHHHHHHHcCccEEEEccccCCCCCCCcccc
Q 022960 22 RRRVVIPNSHGEKLVGILHET-----G-SKQLVIVCHGFQSTKDRIPMVNLAAALEREGISAFRFDFSGNGESEGSFLYG 95 (289)
Q Consensus 22 ~~~~~~~~~~g~~l~~~~~~~-----~-~~~~iv~~hG~~~~~~~~~~~~~~~~l~~~G~~v~~~d~~G~G~s~~~~~~~ 95 (289)
-+...+.+.||.++...+... + .+..||++-|..|-.+- .+...=++.||.|+.++.||++.|.+.+...
T Consensus 214 G~R~kiks~dgneiDtmF~d~r~n~~~ngq~LvIC~EGNAGFYEv----G~m~tP~~lgYsvLGwNhPGFagSTG~P~p~ 289 (517)
T KOG1553|consen 214 GQRLKIKSSDGNEIDTMFLDGRPNQSGNGQDLVICFEGNAGFYEV----GVMNTPAQLGYSVLGWNHPGFAGSTGLPYPV 289 (517)
T ss_pred CeEEEEeecCCcchhheeecCCCCCCCCCceEEEEecCCccceEe----eeecChHHhCceeeccCCCCccccCCCCCcc
Confidence 456778888998887765532 2 24577788887665432 1222334458999999999999999876543
Q ss_pred chHHHHHHHHHHHHHHHhc---CCceEEEEEeChhHHHHHHHHHhCCCccEEEEeccCCccc
Q 022960 96 NYRREAEDLRAIVQDFCAK---GRVITAIIGHSKGGNAVLLYASKYNDISIVINISGRFNLK 154 (289)
Q Consensus 96 ~~~~~~~d~~~~i~~l~~~---~~~~~~l~G~S~Gg~~a~~~a~~~p~v~~~v~~~~~~~~~ 154 (289)
+-. ..+.+++++..+. ..+.|++.|+|.||.-++.+|..+|+|+++|+-+.+-++-
T Consensus 290 n~~---nA~DaVvQfAI~~Lgf~~edIilygWSIGGF~~~waAs~YPdVkavvLDAtFDDll 348 (517)
T KOG1553|consen 290 NTL---NAADAVVQFAIQVLGFRQEDIILYGWSIGGFPVAWAASNYPDVKAVVLDATFDDLL 348 (517)
T ss_pred cch---HHHHHHHHHHHHHcCCCccceEEEEeecCCchHHHHhhcCCCceEEEeecchhhhh
Confidence 322 2233334433332 4568999999999999999999999999999988765543
No 138
>COG4188 Predicted dienelactone hydrolase [General function prediction only]
Probab=99.32 E-value=4.1e-12 Score=98.52 Aligned_cols=95 Identities=22% Similarity=0.292 Sum_probs=73.9
Q ss_pred CCcEEEEEcCCCCCCCCcchHHHHHHHHHcCccEEEEccccC--CCCCCCc------cccchHHHHHHHHHHHHHHHhc-
Q 022960 44 SKQLVIVCHGFQSTKDRIPMVNLAAALEREGISAFRFDFSGN--GESEGSF------LYGNYRREAEDLRAIVQDFCAK- 114 (289)
Q Consensus 44 ~~~~iv~~hG~~~~~~~~~~~~~~~~l~~~G~~v~~~d~~G~--G~s~~~~------~~~~~~~~~~d~~~~i~~l~~~- 114 (289)
..|.|++-||.|+.... +..+++.|++.||.|..+|.+|- |...... ....+.+...|+..++++|.+.
T Consensus 70 ~~PlvvlshG~Gs~~~~--f~~~A~~lAs~Gf~Va~~~hpgs~~~~~~~~~~~~~~~~p~~~~erp~dis~lLd~L~~~~ 147 (365)
T COG4188 70 LLPLVVLSHGSGSYVTG--FAWLAEHLASYGFVVAAPDHPGSNAGGAPAAYAGPGSYAPAEWWERPLDISALLDALLQLT 147 (365)
T ss_pred cCCeEEecCCCCCCccc--hhhhHHHHhhCceEEEeccCCCcccccCChhhcCCcccchhhhhcccccHHHHHHHHHHhh
Confidence 56899999999999876 88899999999999999999984 3332211 1112345568888888888665
Q ss_pred ---------CCceEEEEEeChhHHHHHHHHHhCCC
Q 022960 115 ---------GRVITAIIGHSKGGNAVLLYASKYND 140 (289)
Q Consensus 115 ---------~~~~~~l~G~S~Gg~~a~~~a~~~p~ 140 (289)
+..+|.++|||+||+.++.++....+
T Consensus 148 ~sP~l~~~ld~~~Vgv~GhS~GG~T~m~laGA~~~ 182 (365)
T COG4188 148 ASPALAGRLDPQRVGVLGHSFGGYTAMELAGAELD 182 (365)
T ss_pred cCcccccccCccceEEEecccccHHHHHhcccccc
Confidence 34689999999999999998876654
No 139
>PF03583 LIP: Secretory lipase ; InterPro: IPR005152 This entry represents a family of secreted lipases. Family members include the LIP lipases from Candida albicans, which are expressed and secreted during the infection cycle of these pathogens [].; GO: 0004806 triglyceride lipase activity, 0016042 lipid catabolic process
Probab=99.29 E-value=2.8e-10 Score=88.78 Aligned_cols=66 Identities=17% Similarity=0.183 Sum_probs=49.2
Q ss_pred ccCceEEEEEeCCCCccChhhHHHHHhhC-----CCcEEEEEcCCCcccccCchHHHHHHHHHHHhhcCCCCC
Q 022960 209 CQDCRVLTIHGTKDKMVPAEDALEFDKFI-----PNHKLHIIEGADHEFTSHQDELASLVIQFIKANYQKDGP 276 (289)
Q Consensus 209 ~~~~P~l~i~g~~D~~~~~~~~~~~~~~~-----~~~~~~~~~~~gH~~~~~~~~~~~~i~~fl~~~~~~~~~ 276 (289)
..+.|+++.+|..|.++|+...+.+.+.+ .+++++.+++.+|.... ..-.....+||.+.+...+.
T Consensus 217 ~P~~Pv~i~~g~~D~vvP~~~~~~l~~~~c~~G~a~V~~~~~~~~~H~~~~--~~~~~~a~~Wl~~rf~G~~~ 287 (290)
T PF03583_consen 217 TPTVPVLIYQGTADEVVPPADTDALVAKWCAAGGADVEYVRYPGGGHLGAA--FASAPDALAWLDDRFAGKPA 287 (290)
T ss_pred CCCCCEEEEecCCCCCCChHHHHHHHHHHHHcCCCCEEEEecCCCChhhhh--hcCcHHHHHHHHHHHCCCCC
Confidence 34789999999999999998887766554 35678888999998421 12235577899998876543
No 140
>PF07819 PGAP1: PGAP1-like protein; InterPro: IPR012908 The sequences found in this family are similar to PGAP1 (Q765A7 from SWISSPROT). This is an endoplasmic reticulum membrane protein with a catalytic serine-containing motif that is conserved in a number of lipases. PGAP1 functions as a GPI inositol-deacylase; this deacylation is important for the efficient transport of GPI-anchored proteins from the endoplasmic reticulum to the Golgi body [].; GO: 0016788 hydrolase activity, acting on ester bonds, 0006505 GPI anchor metabolic process, 0006886 intracellular protein transport, 0031227 intrinsic to endoplasmic reticulum membrane
Probab=99.26 E-value=1.1e-10 Score=87.40 Aligned_cols=106 Identities=23% Similarity=0.237 Sum_probs=71.1
Q ss_pred CCcEEEEEcCCCCCCCCcchHHHHHHHHH--------cCccEEEEccccCCCCCCCccccchHHHHHHHHHHHHHHHhc-
Q 022960 44 SKQLVIVCHGFQSTKDRIPMVNLAAALER--------EGISAFRFDFSGNGESEGSFLYGNYRREAEDLRAIVQDFCAK- 114 (289)
Q Consensus 44 ~~~~iv~~hG~~~~~~~~~~~~~~~~l~~--------~G~~v~~~d~~G~G~s~~~~~~~~~~~~~~d~~~~i~~l~~~- 114 (289)
.+.+|||+||.+++... ++.+...+.+ ..++++++|+......- ....+.+..+.+.+.++.+.+.
T Consensus 3 ~g~pVlFIhG~~Gs~~q--~rsl~~~~~~~~~~~~~~~~~d~ft~df~~~~s~~---~g~~l~~q~~~~~~~i~~i~~~~ 77 (225)
T PF07819_consen 3 SGIPVLFIHGNAGSYKQ--VRSLASELQRKALLNDNSSHFDFFTVDFNEELSAF---HGRTLQRQAEFLAEAIKYILELY 77 (225)
T ss_pred CCCEEEEECcCCCCHhH--HHHHHHHHhhhhhhccCccceeEEEeccCcccccc---ccccHHHHHHHHHHHHHHHHHhh
Confidence 56799999999998764 6666666522 14778999987543221 1112334444444444444322
Q ss_pred -----CCceEEEEEeChhHHHHHHHHHhCC---C-ccEEEEeccCCccc
Q 022960 115 -----GRVITAIIGHSKGGNAVLLYASKYN---D-ISIVINISGRFNLK 154 (289)
Q Consensus 115 -----~~~~~~l~G~S~Gg~~a~~~a~~~p---~-v~~~v~~~~~~~~~ 154 (289)
+.+++++|||||||.+|-.++...+ + |+.+|.++++....
T Consensus 78 ~~~~~~~~~vilVgHSmGGlvar~~l~~~~~~~~~v~~iitl~tPh~g~ 126 (225)
T PF07819_consen 78 KSNRPPPRSVILVGHSMGGLVARSALSLPNYDPDSVKTIITLGTPHRGS 126 (225)
T ss_pred hhccCCCCceEEEEEchhhHHHHHHHhccccccccEEEEEEEcCCCCCc
Confidence 5678999999999999988776543 3 99999998876544
No 141
>PTZ00472 serine carboxypeptidase (CBP1); Provisional
Probab=99.24 E-value=1.9e-09 Score=89.48 Aligned_cols=118 Identities=16% Similarity=0.079 Sum_probs=82.3
Q ss_pred CceEEEEEeec----CCCcEEEEEcCCCCCCCCcchHHHH------------------HHHHHcCccEEEEccc-cCCCC
Q 022960 32 GEKLVGILHET----GSKQLVIVCHGFQSTKDRIPMVNLA------------------AALEREGISAFRFDFS-GNGES 88 (289)
Q Consensus 32 g~~l~~~~~~~----~~~~~iv~~hG~~~~~~~~~~~~~~------------------~~l~~~G~~v~~~d~~-G~G~s 88 (289)
+..+.+++++. .+.|+||+++|++|.+.. +..+. -.+.+. .+++.+|.| |+|.|
T Consensus 60 ~~~lFyw~~~s~~~~~~~Pl~lwlnGGPG~ss~--~G~f~E~GP~~i~~~~~~~~~n~~sW~~~-~~~l~iDqP~G~G~S 136 (462)
T PTZ00472 60 DKHYFYWAFGPRNGNPEAPVLLWMTGGPGCSSM--FALLAENGPCLMNETTGDIYNNTYSWNNE-AYVIYVDQPAGVGFS 136 (462)
T ss_pred CceEEEEEEEcCCCCCCCCEEEEECCCCcHHHH--HhhhccCCCeEEeCCCCceeECCcccccc-cCeEEEeCCCCcCcc
Confidence 56788887763 367999999999887732 21111 013333 689999976 88887
Q ss_pred CCCcc--ccchHHHHHHHHHHHHHHHhc----CCceEEEEEeChhHHHHHHHHHhC---------CC--ccEEEEeccCC
Q 022960 89 EGSFL--YGNYRREAEDLRAIVQDFCAK----GRVITAIIGHSKGGNAVLLYASKY---------ND--ISIVINISGRF 151 (289)
Q Consensus 89 ~~~~~--~~~~~~~~~d~~~~i~~l~~~----~~~~~~l~G~S~Gg~~a~~~a~~~---------p~--v~~~v~~~~~~ 151 (289)
..... ..+.++.++|+.++++.+.+. ...+++|+|+|+||..+..+|..- .. ++++++-+|+.
T Consensus 137 ~~~~~~~~~~~~~~a~d~~~~l~~f~~~~p~~~~~~~~i~GeSygG~y~p~~a~~i~~~n~~~~~~~inLkGi~IGNg~~ 216 (462)
T PTZ00472 137 YADKADYDHNESEVSEDMYNFLQAFFGSHEDLRANDLFVVGESYGGHYAPATAYRINMGNKKGDGLYINLAGLAVGNGLT 216 (462)
T ss_pred cCCCCCCCCChHHHHHHHHHHHHHHHHhCccccCCCEEEEeecchhhhHHHHHHHHHhhccccCCceeeeEEEEEecccc
Confidence 65322 234467789999998876543 346899999999999988877652 12 78999888865
Q ss_pred c
Q 022960 152 N 152 (289)
Q Consensus 152 ~ 152 (289)
+
T Consensus 217 d 217 (462)
T PTZ00472 217 D 217 (462)
T ss_pred C
Confidence 4
No 142
>PF05677 DUF818: Chlamydia CHLPS protein (DUF818); InterPro: IPR008536 This family of unknown function includes several Chlamydia CHLPS proteins and Legionella SidB proteins.
Probab=99.24 E-value=1.1e-09 Score=83.97 Aligned_cols=114 Identities=20% Similarity=0.244 Sum_probs=85.1
Q ss_pred ceeeEEeeCCCCceEEEEEee---cCCCcEEEEEcCCCCCCCCcch-----HHHHHHHHHcCccEEEEccccCCCCCCCc
Q 022960 21 QRRRVVIPNSHGEKLVGILHE---TGSKQLVIVCHGFQSTKDRIPM-----VNLAAALEREGISAFRFDFSGNGESEGSF 92 (289)
Q Consensus 21 ~~~~~~~~~~~g~~l~~~~~~---~~~~~~iv~~hG~~~~~~~~~~-----~~~~~~l~~~G~~v~~~d~~G~G~s~~~~ 92 (289)
..+++.+.. |+..+...... ..+...||++-|.++..+.... ..+.+.....|.+|+.+++||.|.|.+..
T Consensus 111 ~~kRv~Iq~-D~~~IDt~~I~~~~a~~~RWiL~s~GNg~~~E~~~~~~~~~~~~~~~ak~~~aNvl~fNYpGVg~S~G~~ 189 (365)
T PF05677_consen 111 SVKRVPIQY-DGVKIDTMAIHQPEAKPQRWILVSNGNGECYENRAMLDYKDDWIQRFAKELGANVLVFNYPGVGSSTGPP 189 (365)
T ss_pred ceeeEEEee-CCEEEEEEEeeCCCCCCCcEEEEEcCChHHhhhhhhhccccHHHHHHHHHcCCcEEEECCCccccCCCCC
Confidence 456677765 78887765443 2367799999999887654110 22333334458999999999999999877
Q ss_pred cccchHHHHHHHHHHHHHHHhc----CCceEEEEEeChhHHHHHHHHHhC
Q 022960 93 LYGNYRREAEDLRAIVQDFCAK----GRVITAIIGHSKGGNAVLLYASKY 138 (289)
Q Consensus 93 ~~~~~~~~~~d~~~~i~~l~~~----~~~~~~l~G~S~Gg~~a~~~a~~~ 138 (289)
. ..+++.|..+.+++|+++ +.+++++.|||+||.++..++..+
T Consensus 190 s---~~dLv~~~~a~v~yL~d~~~G~ka~~Ii~yG~SLGG~Vqa~AL~~~ 236 (365)
T PF05677_consen 190 S---RKDLVKDYQACVRYLRDEEQGPKAKNIILYGHSLGGGVQAEALKKE 236 (365)
T ss_pred C---HHHHHHHHHHHHHHHHhcccCCChheEEEeeccccHHHHHHHHHhc
Confidence 3 488899999999999864 347899999999999999865554
No 143
>KOG2565 consensus Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]
Probab=99.21 E-value=8.9e-10 Score=84.94 Aligned_cols=110 Identities=17% Similarity=0.142 Sum_probs=83.9
Q ss_pred CCceEEEEEeecC------CCcEEEEEcCCCCCCCCcchHHHHHHHHHc---C------ccEEEEccccCCCCCCCcc-c
Q 022960 31 HGEKLVGILHETG------SKQLVIVCHGFQSTKDRIPMVNLAAALERE---G------ISAFRFDFSGNGESEGSFL-Y 94 (289)
Q Consensus 31 ~g~~l~~~~~~~~------~~~~iv~~hG~~~~~~~~~~~~~~~~l~~~---G------~~v~~~d~~G~G~s~~~~~-~ 94 (289)
.|.+++..-..+. .--+++++||++|+-. .+-.+++.|.+- | |.||++.+||+|-|+++.. .
T Consensus 132 eGL~iHFlhvk~p~~k~~k~v~PlLl~HGwPGsv~--EFykfIPlLT~p~~hg~~~d~~FEVI~PSlPGygwSd~~sk~G 209 (469)
T KOG2565|consen 132 EGLKIHFLHVKPPQKKKKKKVKPLLLLHGWPGSVR--EFYKFIPLLTDPKRHGNESDYAFEVIAPSLPGYGWSDAPSKTG 209 (469)
T ss_pred cceeEEEEEecCCccccCCcccceEEecCCCchHH--HHHhhhhhhcCccccCCccceeEEEeccCCCCcccCcCCccCC
Confidence 5777775433222 2248999999999984 477788888654 2 7799999999999997763 3
Q ss_pred cchHHHHHHHHHHHHHHHhcCCceEEEEEeChhHHHHHHHHHhCCC-ccEEE
Q 022960 95 GNYRREAEDLRAIVQDFCAKGRVITAIIGHSKGGNAVLLYASKYND-ISIVI 145 (289)
Q Consensus 95 ~~~~~~~~d~~~~i~~l~~~~~~~~~l~G~S~Gg~~a~~~a~~~p~-v~~~v 145 (289)
.+..+.+.-+..++-.| +.+++.+-|--+|+.|+..+|..+|+ |.|+=
T Consensus 210 Fn~~a~ArvmrkLMlRL---g~nkffiqGgDwGSiI~snlasLyPenV~GlH 258 (469)
T KOG2565|consen 210 FNAAATARVMRKLMLRL---GYNKFFIQGGDWGSIIGSNLASLYPENVLGLH 258 (469)
T ss_pred ccHHHHHHHHHHHHHHh---CcceeEeecCchHHHHHHHHHhhcchhhhHhh
Confidence 34455566667777666 89999999999999999999999998 76543
No 144
>KOG2237 consensus Predicted serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=99.18 E-value=5.3e-10 Score=91.94 Aligned_cols=242 Identities=17% Similarity=0.090 Sum_probs=145.3
Q ss_pred ccceeeEEeeCCCCceEEEEEeec------CCCcEEEEEcCCCCCCCCcchHHHHHHHHHcCccEEEEccccCCCCCCCc
Q 022960 19 VVQRRRVVIPNSHGEKLVGILHET------GSKQLVIVCHGFQSTKDRIPMVNLAAALEREGISAFRFDFSGNGESEGSF 92 (289)
Q Consensus 19 ~~~~~~~~~~~~~g~~l~~~~~~~------~~~~~iv~~hG~~~~~~~~~~~~~~~~l~~~G~~v~~~d~~G~G~s~~~~ 92 (289)
....+++.+++.||..+...+... +++|.+|+.+|.-+-.-...|..-...|.++|+.....|.||-|+-....
T Consensus 438 ~y~~~r~~~~SkDGt~VPM~Iv~kk~~k~dg~~P~LLygYGay~isl~p~f~~srl~lld~G~Vla~a~VRGGGe~G~~W 517 (712)
T KOG2237|consen 438 DYVVERIEVSSKDGTKVPMFIVYKKDIKLDGSKPLLLYGYGAYGISLDPSFRASRLSLLDRGWVLAYANVRGGGEYGEQW 517 (712)
T ss_pred ceEEEEEEEecCCCCccceEEEEechhhhcCCCceEEEEecccceeeccccccceeEEEecceEEEEEeeccCcccccch
Confidence 456678889999999887665432 37888888887665443333544444556689999999999977654322
Q ss_pred ccc----chHHHHHHHHHHHHHHHhc---CCceEEEEEeChhHHHHHHHHHhCCC-ccEEEEeccCCcccccccccccch
Q 022960 93 LYG----NYRREAEDLRAIVQDFCAK---GRVITAIIGHSKGGNAVLLYASKYND-ISIVINISGRFNLKRGIEGRLGLG 164 (289)
Q Consensus 93 ~~~----~~~~~~~d~~~~i~~l~~~---~~~~~~l~G~S~Gg~~a~~~a~~~p~-v~~~v~~~~~~~~~~~~~~~~~~~ 164 (289)
... .-....+|+.+.+++|.++ ..++..+.|.|.||.++..++..+|+ +.++|+-.|..+...-........
T Consensus 518 Hk~G~lakKqN~f~Dfia~AeyLve~gyt~~~kL~i~G~SaGGlLvga~iN~rPdLF~avia~VpfmDvL~t~~~tilpl 597 (712)
T KOG2237|consen 518 HKDGRLAKKQNSFDDFIACAEYLVENGYTQPSKLAIEGGSAGGLLVGACINQRPDLFGAVIAKVPFMDVLNTHKDTILPL 597 (712)
T ss_pred hhccchhhhcccHHHHHHHHHHHHHcCCCCccceeEecccCccchhHHHhccCchHhhhhhhcCcceehhhhhccCcccc
Confidence 111 1122358889999999888 45689999999999999999999999 999998888877655444443333
Q ss_pred hHhhhhhcCcccccccccccccccChhhhhhhhccchhhhhcccccCceEEEEEeCCCCccChhhHHHHHhhC-------
Q 022960 165 YLQRIKQNGFIDVRNKKGKLEYRVTQESLMDRLSTDIHAACHMICQDCRVLTIHGTKDKMVPAEDALEFDKFI------- 237 (289)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~i~g~~D~~~~~~~~~~~~~~~------- 237 (289)
+.......+... ....+.................-.-+|+..+.+|..|.+..+.++.+.+
T Consensus 598 t~sd~ee~g~p~------------~~~~~~~i~~y~pv~~i~~q~~YPS~lvtta~hD~RV~~~~~~K~vAklre~~~~~ 665 (712)
T KOG2237|consen 598 TTSDYEEWGNPE------------DFEDLIKISPYSPVDNIKKQVQYPSMLVTTADHDDRVGPLESLKWVAKLREATCDS 665 (712)
T ss_pred chhhhcccCChh------------hhhhhheecccCccCCCchhccCcceEEeeccCCCcccccchHHHHHHHHHHhhcc
Confidence 332222211111 0000011111111111111011235889999998776665544443332
Q ss_pred ----CCcEEEEEcCCCcccccCch---HHHHHHHHHHHhhcC
Q 022960 238 ----PNHKLHIIEGADHEFTSHQD---ELASLVIQFIKANYQ 272 (289)
Q Consensus 238 ----~~~~~~~~~~~gH~~~~~~~---~~~~~i~~fl~~~~~ 272 (289)
+..-+.+-.++||..-.... +-......||.+.+.
T Consensus 666 ~~q~~pvll~i~~~agH~~~~~~~k~~~E~a~~yaFl~K~~~ 707 (712)
T KOG2237|consen 666 LKQTNPVLLRIETKAGHGAEKPRFKQIEEAAFRYAFLAKMLN 707 (712)
T ss_pred hhcCCCEEEEEecCCccccCCchHHHHHHHHHHHHHHHHHhc
Confidence 12456677899998532222 223344567766554
No 145
>KOG3975 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.18 E-value=2.1e-08 Score=73.34 Aligned_cols=219 Identities=17% Similarity=0.158 Sum_probs=121.5
Q ss_pred CCCcEEEEEcCCCCCCCCcchHHHHHHHHHc-C--ccEEEEccccCCCCC---CC------ccccchHHHHHHHHHHHHH
Q 022960 43 GSKQLVIVCHGFQSTKDRIPMVNLAAALERE-G--ISAFRFDFSGNGESE---GS------FLYGNYRREAEDLRAIVQD 110 (289)
Q Consensus 43 ~~~~~iv~~hG~~~~~~~~~~~~~~~~l~~~-G--~~v~~~d~~G~G~s~---~~------~~~~~~~~~~~d~~~~i~~ 110 (289)
.+++.+++++|.+|.. .+|..+++.|... + ..++.+...||-.-+ .. .+..+++++++--.++++.
T Consensus 27 ~~~~li~~IpGNPG~~--gFY~~F~~~L~~~l~~r~~~wtIsh~~H~~~P~sl~~~~s~~~~eifsL~~QV~HKlaFik~ 104 (301)
T KOG3975|consen 27 EDKPLIVWIPGNPGLL--GFYTEFARHLHLNLIDRLPVWTISHAGHALMPASLREDHSHTNEEIFSLQDQVDHKLAFIKE 104 (301)
T ss_pred CCceEEEEecCCCCch--hHHHHHHHHHHHhcccccceeEEeccccccCCcccccccccccccccchhhHHHHHHHHHHH
Confidence 3788999999999998 5699999888765 2 458888888875443 11 1223444444444444433
Q ss_pred HHhcCCceEEEEEeChhHHHHHHHHHhC-CC--ccEEEEeccCCccc----ccc-------------------cccccch
Q 022960 111 FCAKGRVITAIIGHSKGGNAVLLYASKY-ND--ISIVINISGRFNLK----RGI-------------------EGRLGLG 164 (289)
Q Consensus 111 l~~~~~~~~~l~G~S~Gg~~a~~~a~~~-p~--v~~~v~~~~~~~~~----~~~-------------------~~~~~~~ 164 (289)
... ...+++++|||-|+++.+.+.... +. |.+++++-|....- .+. .-.....
T Consensus 105 ~~P-k~~ki~iiGHSiGaYm~Lqil~~~k~~~~vqKa~~LFPTIerM~eSpnG~~~t~~l~~~~hv~~lt~yi~~~~lp~ 183 (301)
T KOG3975|consen 105 YVP-KDRKIYIIGHSIGAYMVLQILPSIKLVFSVQKAVLLFPTIERMHESPNGIRLTKVLRYLPHVVSLTSYIYWILLPG 183 (301)
T ss_pred hCC-CCCEEEEEecchhHHHHHHHhhhcccccceEEEEEecchHHHHhcCCCceEeeeeeeeehhhhheeeeeeeecChH
Confidence 322 345899999999999999988743 33 77777776532110 000 0001111
Q ss_pred hHhhhhhcCcccccccc---cccccccC------------hhhhhhhhccchhhhhcccccCceEEEEEeCCCCccChhh
Q 022960 165 YLQRIKQNGFIDVRNKK---GKLEYRVT------------QESLMDRLSTDIHAACHMICQDCRVLTIHGTKDKMVPAED 229 (289)
Q Consensus 165 ~~~~~~~~~~~~~~~~~---~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~P~l~i~g~~D~~~~~~~ 229 (289)
+.+.+.-.......+.. ........ .+.+......+ ..... +-.+-+.+.+|..|.+||.+.
T Consensus 184 ~ir~~Li~~~l~~~n~p~e~l~tal~l~h~~v~rn~v~la~qEm~eV~~~d-~e~~e--en~d~l~Fyygt~DgW~p~~~ 260 (301)
T KOG3975|consen 184 FIRFILIKFMLCGSNGPQEFLSTALFLTHPQVVRNSVGLAAQEMEEVTTRD-IEYCE--ENLDSLWFYYGTNDGWVPSHY 260 (301)
T ss_pred HHHHHHHHHhcccCCCcHHHHhhHHHhhcHHHHHHHhhhchHHHHHHHHhH-HHHHH--hcCcEEEEEccCCCCCcchHH
Confidence 11111111110000000 00000000 01111111100 01111 114678899999999999999
Q ss_pred HHHHHhhCCCcEEEEE-cCCCcccc-cCchHHHHHHHHHH
Q 022960 230 ALEFDKFIPNHKLHII-EGADHEFT-SHQDELASLVIQFI 267 (289)
Q Consensus 230 ~~~~~~~~~~~~~~~~-~~~gH~~~-~~~~~~~~~i~~fl 267 (289)
...+.+.+|..++..- ++..|.|. .+.+.++..+.+.+
T Consensus 261 ~d~~kdd~~eed~~Ldedki~HAFV~~~~q~ma~~v~d~~ 300 (301)
T KOG3975|consen 261 YDYYKDDVPEEDLKLDEDKIPHAFVVKHAQYMANAVFDMI 300 (301)
T ss_pred HHHHhhhcchhceeeccccCCcceeecccHHHHHHHHHhh
Confidence 9999999986444332 67899976 45566777766654
No 146
>PF01674 Lipase_2: Lipase (class 2); InterPro: IPR002918 Lipases or triacylglycerol acylhydrolases hydrolyse ester bonds in triacylglycerol giving diacylglycerol, monoacylglycerol, glycerol and free fatty acids []. This group of lipases has been called class 2 as they are not clearly related to other lipase families, and includes LipA and LipB from Bacillus subtilis [] and uncharacterised proteins from Caenorhabditis.; PDB: 2VTV_B 2X76_A 2X5X_A 2QXU_A 3QMM_A 1I6W_A 3D2C_J 2QXT_B 1R50_A 1T2N_A ....
Probab=99.17 E-value=1.3e-10 Score=85.71 Aligned_cols=100 Identities=23% Similarity=0.312 Sum_probs=59.8
Q ss_pred cEEEEEcCCCCCCCCcchHHHHHHHHHcCcc---EEEEccccCCCCCCCccccchHHHHHHHHHHHHHHHhc-CCceEEE
Q 022960 46 QLVIVCHGFQSTKDRIPMVNLAAALEREGIS---AFRFDFSGNGESEGSFLYGNYRREAEDLRAIVQDFCAK-GRVITAI 121 (289)
Q Consensus 46 ~~iv~~hG~~~~~~~~~~~~~~~~l~~~G~~---v~~~d~~G~G~s~~~~~~~~~~~~~~d~~~~i~~l~~~-~~~~~~l 121 (289)
.||||+||.+++... -|..+++.|.++||. |+++++-...............+.+..+.++|+.+.+. +. +|-|
T Consensus 2 ~PVVlVHG~~~~~~~-~w~~~~~~l~~~GY~~~~vya~tyg~~~~~~~~~~~~~~~~~~~~l~~fI~~Vl~~TGa-kVDI 79 (219)
T PF01674_consen 2 RPVVLVHGTGGNAYS-NWSTLAPYLKAAGYCDSEVYALTYGSGNGSPSVQNAHMSCESAKQLRAFIDAVLAYTGA-KVDI 79 (219)
T ss_dssp --EEEE--TTTTTCG-GCCHHHHHHHHTT--CCCEEEE--S-CCHHTHHHHHHB-HHHHHHHHHHHHHHHHHHT---EEE
T ss_pred CCEEEECCCCcchhh-CHHHHHHHHHHcCCCcceeEeccCCCCCCCCcccccccchhhHHHHHHHHHHHHHhhCC-EEEE
Confidence 579999999985543 489999999999999 79999854333221111111123346778888777665 66 9999
Q ss_pred EEeChhHHHHHHHHHhCCCccEEEEe
Q 022960 122 IGHSKGGNAVLLYASKYNDISIVINI 147 (289)
Q Consensus 122 ~G~S~Gg~~a~~~a~~~p~v~~~v~~ 147 (289)
|||||||.++-.+......++..+.+
T Consensus 80 VgHS~G~~iaR~yi~~~~~~d~~~~l 105 (219)
T PF01674_consen 80 VGHSMGGTIARYYIKGGGGADKVVNL 105 (219)
T ss_dssp EEETCHHHHHHHHHHHCTGGGTEEE-
T ss_pred EEcCCcCHHHHHHHHHcCCCCcccCc
Confidence 99999999998887654224433333
No 147
>PF12048 DUF3530: Protein of unknown function (DUF3530); InterPro: IPR022529 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 272 to 336 amino acids in length. These proteins are distantly related to alpa/beta hydrolases so they may act as enzymes.
Probab=99.13 E-value=3.9e-08 Score=77.35 Aligned_cols=183 Identities=14% Similarity=0.136 Sum_probs=120.2
Q ss_pred CCcEEEEEcCCCCCCCC-cchHHHHHHHHHcCccEEEEcccc--CCCCC--------------CCcc-c-----------
Q 022960 44 SKQLVIVCHGFQSTKDR-IPMVNLAAALEREGISAFRFDFSG--NGESE--------------GSFL-Y----------- 94 (289)
Q Consensus 44 ~~~~iv~~hG~~~~~~~-~~~~~~~~~l~~~G~~v~~~d~~G--~G~s~--------------~~~~-~----------- 94 (289)
...+||++||.+.+.+. .....+.+.|.+.|+..+.+.+|. ..... .... .
T Consensus 86 ~~G~vIilp~~g~~~d~p~~i~~LR~~L~~~GW~Tlsit~P~~~~~~~p~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 165 (310)
T PF12048_consen 86 PQGAVIILPDWGEHPDWPGLIAPLRRELPDHGWATLSITLPDPAPPASPNRATEAEEVPSAGDQQLSQPSDEPSPASAQE 165 (310)
T ss_pred CceEEEEecCCCCCCCcHhHHHHHHHHhhhcCceEEEecCCCcccccCCccCCCCCCCCCCCCCCcCCCCCCCccccccH
Confidence 46699999999998753 346678888899999999998886 11000 0000 0
Q ss_pred -----cchHHHHHHHHHHHHHHHhcCCceEEEEEeChhHHHHHHHHHhCCC--ccEEEEeccCCcccccccccccchhHh
Q 022960 95 -----GNYRREAEDLRAIVQDFCAKGRVITAIIGHSKGGNAVLLYASKYND--ISIVINISGRFNLKRGIEGRLGLGYLQ 167 (289)
Q Consensus 95 -----~~~~~~~~d~~~~i~~l~~~~~~~~~l~G~S~Gg~~a~~~a~~~p~--v~~~v~~~~~~~~~~~~~~~~~~~~~~ 167 (289)
..-.....-+.+++.++.+++..+++|+||+.|+..++.+....+. ++++|++++....... ...+.
T Consensus 166 ~~~~~~~~~~~~ari~Aa~~~~~~~~~~~ivlIg~G~gA~~~~~~la~~~~~~~daLV~I~a~~p~~~~-----n~~l~- 239 (310)
T PF12048_consen 166 AEAREAYEERLFARIEAAIAFAQQQGGKNIVLIGHGTGAGWAARYLAEKPPPMPDALVLINAYWPQPDR-----NPALA- 239 (310)
T ss_pred hHHhHHHHHHHHHHHHHHHHHHHhcCCceEEEEEeChhHHHHHHHHhcCCCcccCeEEEEeCCCCcchh-----hhhHH-
Confidence 0112334667788888887777789999999999999999998876 8999999985443211 00000
Q ss_pred hhhhcCcccccccccccccccChhhhhhhhccchhhhhcccccCceEEEEEeCCCCccChhhH---HHHHhhC--CCcEE
Q 022960 168 RIKQNGFIDVRNKKGKLEYRVTQESLMDRLSTDIHAACHMICQDCRVLTIHGTKDKMVPAEDA---LEFDKFI--PNHKL 242 (289)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~i~g~~D~~~~~~~~---~~~~~~~--~~~~~ 242 (289)
+ ... .+++|||=|++.+...+ ...+ +.+.++. ++.+-
T Consensus 240 ---------------------------~--------~la--~l~iPvLDi~~~~~~~~-~~~a~~R~~~a~r~~~~~YrQ 281 (310)
T PF12048_consen 240 ---------------------------E--------QLA--QLKIPVLDIYSADNPAS-QQTAKQRKQAAKRNKKPDYRQ 281 (310)
T ss_pred ---------------------------H--------Hhh--ccCCCEEEEecCCChHH-HHHHHHHHHHHHhccCCCcee
Confidence 0 001 23789999998884332 2211 1222332 34566
Q ss_pred EEEcCCCcccccCchHHHHHHHHHHHhh
Q 022960 243 HIIEGADHEFTSHQDELASLVIQFIKAN 270 (289)
Q Consensus 243 ~~~~~~gH~~~~~~~~~~~~i~~fl~~~ 270 (289)
..+.+..|......+.+.+.|..||+.+
T Consensus 282 ~~L~~~~~~~~~~~~~l~~rIrGWL~~~ 309 (310)
T PF12048_consen 282 IQLPGLPDNPSGWQEQLLRRIRGWLKRH 309 (310)
T ss_pred EecCCCCCChhhHHHHHHHHHHHHHHhh
Confidence 6677766765444455999999999864
No 148
>KOG3253 consensus Predicted alpha/beta hydrolase [General function prediction only]
Probab=99.12 E-value=1.2e-09 Score=89.23 Aligned_cols=180 Identities=22% Similarity=0.242 Sum_probs=113.0
Q ss_pred CCcEEEEEcCCC-CCCCCcchHHHHHHHHHcC--ccEEEEccccCCCCCCCccccchHHHHHHHHHHHHHHHhc-----C
Q 022960 44 SKQLVIVCHGFQ-STKDRIPMVNLAAALEREG--ISAFRFDFSGNGESEGSFLYGNYRREAEDLRAIVQDFCAK-----G 115 (289)
Q Consensus 44 ~~~~iv~~hG~~-~~~~~~~~~~~~~~l~~~G--~~v~~~d~~G~G~s~~~~~~~~~~~~~~d~~~~i~~l~~~-----~ 115 (289)
..|.++++||.+ ....+..+..+...|...| ..+-.+|++.-- ...+....++.+..+.++...+ .
T Consensus 175 ~spl~i~aps~p~ap~tSd~~~~wqs~lsl~gevvev~tfdl~n~i------gG~nI~h~ae~~vSf~r~kvlei~gefp 248 (784)
T KOG3253|consen 175 ASPLAIKAPSTPLAPKTSDRMWSWQSRLSLKGEVVEVPTFDLNNPI------GGANIKHAAEYSVSFDRYKVLEITGEFP 248 (784)
T ss_pred CCceEEeccCCCCCCccchHHHhHHHHHhhhceeeeeccccccCCC------CCcchHHHHHHHHHHhhhhhhhhhccCC
Confidence 357889999988 2221111223333443333 456677776311 1123444455555555533222 4
Q ss_pred CceEEEEEeChhHHHHHHHHHhCCC--ccEEEEeccCCcccccccccccchhHhhhhhcCcccccccccccccccChhhh
Q 022960 116 RVITAIIGHSKGGNAVLLYASKYND--ISIVINISGRFNLKRGIEGRLGLGYLQRIKQNGFIDVRNKKGKLEYRVTQESL 193 (289)
Q Consensus 116 ~~~~~l~G~S~Gg~~a~~~a~~~p~--v~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (289)
..+|+|+|.|||+.++......+.+ |+++|+++-+++....-.... .+.
T Consensus 249 ha~IiLvGrsmGAlVachVSpsnsdv~V~~vVCigypl~~vdgprgir----------------------------DE~- 299 (784)
T KOG3253|consen 249 HAPIILVGRSMGALVACHVSPSNSDVEVDAVVCIGYPLDTVDGPRGIR----------------------------DEA- 299 (784)
T ss_pred CCceEEEecccCceeeEEeccccCCceEEEEEEecccccCCCcccCCc----------------------------chh-
Confidence 5589999999999988888777765 899998876554332211000 001
Q ss_pred hhhhccchhhhhcccccCceEEEEEeCCCCccChhhHHHHHhhCC-CcEEEEEcCCCccccc-----C-----chHHHHH
Q 022960 194 MDRLSTDIHAACHMICQDCRVLTIHGTKDKMVPAEDALEFDKFIP-NHKLHIIEGADHEFTS-----H-----QDELASL 262 (289)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~P~l~i~g~~D~~~~~~~~~~~~~~~~-~~~~~~~~~~gH~~~~-----~-----~~~~~~~ 262 (289)
...++.|+|||.|.+|..++++..+.+.+++. ..+++++.+++|.+-. + ..++...
T Consensus 300 -------------Lldmk~PVLFV~Gsnd~mcspn~ME~vreKMqA~~elhVI~~adhsmaipk~k~esegltqseVd~~ 366 (784)
T KOG3253|consen 300 -------------LLDMKQPVLFVIGSNDHMCSPNSMEEVREKMQAEVELHVIGGADHSMAIPKRKVESEGLTQSEVDSA 366 (784)
T ss_pred -------------hHhcCCceEEEecCCcccCCHHHHHHHHHHhhccceEEEecCCCccccCCccccccccccHHHHHHH
Confidence 11337899999999999999999999999885 4799999999999531 1 2345555
Q ss_pred HHHHHHhhc
Q 022960 263 VIQFIKANY 271 (289)
Q Consensus 263 i~~fl~~~~ 271 (289)
+.+||.+..
T Consensus 367 i~~aI~efv 375 (784)
T KOG3253|consen 367 IAQAIKEFV 375 (784)
T ss_pred HHHHHHHHH
Confidence 555555544
No 149
>KOG1551 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.12 E-value=2.7e-09 Score=78.49 Aligned_cols=230 Identities=11% Similarity=0.109 Sum_probs=125.4
Q ss_pred EeecCCCcEEEEEcCCCCCCCCcchH-HHHHHHHHcCccEEEEccccCCCCCCCccccchHHHH-----------HHHHH
Q 022960 39 LHETGSKQLVIVCHGFQSTKDRIPMV-NLAAALEREGISAFRFDFSGNGESEGSFLYGNYRREA-----------EDLRA 106 (289)
Q Consensus 39 ~~~~~~~~~iv~~hG~~~~~~~~~~~-~~~~~l~~~G~~v~~~d~~G~G~s~~~~~~~~~~~~~-----------~d~~~ 106 (289)
+.+.+.++..+.+-|-|.+.- .-+ .+...+.++|...+.++-|-+|....+......-..+ ++...
T Consensus 107 liPQK~~~KOG~~a~tgdh~y--~rr~~L~~p~~k~~i~tmvle~pfYgqr~p~~q~~~~Le~vtDlf~mG~A~I~E~~~ 184 (371)
T KOG1551|consen 107 LIPQKMADLCLSWALTGDHVY--TRRLVLSKPINKREIATMVLEKPFYGQRVPEEQIIHMLEYVTDLFKMGRATIQEFVK 184 (371)
T ss_pred ecccCcCCeeEEEeecCCcee--EeeeeecCchhhhcchheeeecccccccCCHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 334445666666666666541 111 3556677788999999999999876543322111112 22223
Q ss_pred HHHHHHhcCCceEEEEEeChhHHHHHHHHHhCCC-ccEEEEeccCCcccccccccccc--hhHhhhhhc-Cccccccccc
Q 022960 107 IVQDFCAKGRVITAIIGHSKGGNAVLLYASKYND-ISIVINISGRFNLKRGIEGRLGL--GYLQRIKQN-GFIDVRNKKG 182 (289)
Q Consensus 107 ~i~~l~~~~~~~~~l~G~S~Gg~~a~~~a~~~p~-v~~~v~~~~~~~~~~~~~~~~~~--~~~~~~~~~-~~~~~~~~~~ 182 (289)
++.|-...+..++.++|-||||.+|..+...++. |.-+=++++.-.........+.. ...+++... .+.....+..
T Consensus 185 lf~Ws~~~g~g~~~~~g~Smgg~~a~~vgS~~q~Pva~~p~l~~~~asvs~teg~l~~~~s~~~~~~~~t~~~~~~~r~p 264 (371)
T KOG1551|consen 185 LFTWSSADGLGNLNLVGRSMGGDIANQVGSLHQKPVATAPCLNSSKASVSATEGLLLQDTSKMKRFNQTTNKSGYTSRNP 264 (371)
T ss_pred hcccccccCcccceeeeeecccHHHHhhcccCCCCccccccccccccchhhhhhhhhhhhHHHHhhccCcchhhhhhhCc
Confidence 3333222367899999999999999998888777 55444444321111111111111 111111111 0111111111
Q ss_pred ccccccC--------hhhhhhhhccchh--hhhccc--ccC-ceEEEEEeCCCCccChhhHHHHHhhCCCcEEEEEcCCC
Q 022960 183 KLEYRVT--------QESLMDRLSTDIH--AACHMI--CQD-CRVLTIHGTKDKMVPAEDALEFDKFIPNHKLHIIEGAD 249 (289)
Q Consensus 183 ~~~~~~~--------~~~~~~~~~~~~~--~~~~~~--~~~-~P~l~i~g~~D~~~~~~~~~~~~~~~~~~~~~~~~~~g 249 (289)
...+... .......+..-.. ...... +++ --+.++.+++|..+|......+.+.+|++++..++ +|
T Consensus 265 ~Q~~~~~~~~~srn~~~E~~~~Mr~vmd~~T~v~~fp~Pvdpsl~ivv~A~~D~Yipr~gv~~lQ~~WPg~eVr~~e-gG 343 (371)
T KOG1551|consen 265 AQSYHLLSKEQSRNSRKESLIFMRGVMDECTHVANFPVPVDPSLIIVVQAKEDAYIPRTGVRSLQEIWPGCEVRYLE-GG 343 (371)
T ss_pred hhhHHHHHHHhhhcchHHHHHHHHHHHHhhchhhcCCCCCCCCeEEEEEecCCccccccCcHHHHHhCCCCEEEEee-cC
Confidence 1111000 0111111110000 001111 112 23677789999999999999999999999999999 59
Q ss_pred cc--cccCchHHHHHHHHHHHhhc
Q 022960 250 HE--FTSHQDELASLVIQFIKANY 271 (289)
Q Consensus 250 H~--~~~~~~~~~~~i~~fl~~~~ 271 (289)
|. +....+.+-+.|.+-|++.-
T Consensus 344 HVsayl~k~dlfRR~I~d~L~R~~ 367 (371)
T KOG1551|consen 344 HVSAYLFKQDLFRRAIVDGLDRLD 367 (371)
T ss_pred ceeeeehhchHHHHHHHHHHHhhh
Confidence 98 45677889999999888654
No 150
>PF00151 Lipase: Lipase; InterPro: IPR013818 Triglyceride lipases (3.1.1.3 from EC) are lipolytic enzymes that hydrolyse ester linkages of triglycerides []. Lipases are widely distributed in animals, plants and prokaryotes. At least three tissue-specific isozymes exist in higher vertebrates, pancreatic, hepatic and gastric/lingual. These lipases are closely related to each other and to lipoprotein lipase (3.1.1.34 from EC), which hydrolyses triglycerides of chylomicrons and very low density lipoproteins (VLDL) []. The most conserved region in all these proteins is centred around a serine residue which has been shown [] to participate, with an histidine and an aspartic acid residue, in a charge relay system. Such a region is also present in lipases of prokaryotic origin and in lecithin-cholesterol acyltransferase (2.3.1.43 from EC) (LCAT) [], which catalyzes fatty acid transfer between phosphatidylcholine and cholesterol.; PDB: 1LPB_B 1LPA_B 1N8S_A 1GPL_A 1W52_X 2PVS_B 2OXE_B 1BU8_A 2PPL_A 1ETH_A ....
Probab=99.11 E-value=3.1e-10 Score=89.62 Aligned_cols=109 Identities=17% Similarity=0.181 Sum_probs=69.1
Q ss_pred CCcEEEEEcCCCCCC-CCcchHHHHHHHHH---cCccEEEEccccCCCCCCCccccchHHHHHHHHHHHHHHHhc---CC
Q 022960 44 SKQLVIVCHGFQSTK-DRIPMVNLAAALER---EGISAFRFDFSGNGESEGSFLYGNYRREAEDLRAIVQDFCAK---GR 116 (289)
Q Consensus 44 ~~~~iv~~hG~~~~~-~~~~~~~~~~~l~~---~G~~v~~~d~~G~G~s~~~~~~~~~~~~~~d~~~~i~~l~~~---~~ 116 (289)
++|++|++||+.++. .......+.+.+.+ .+++|+++|+...-...-.............+..+|..|... ..
T Consensus 70 ~~pt~iiiHGw~~~~~~~~~~~~~~~all~~~~~d~NVI~VDWs~~a~~~Y~~a~~n~~~vg~~la~~l~~L~~~~g~~~ 149 (331)
T PF00151_consen 70 SKPTVIIIHGWTGSGSSESWIQDMIKALLQKDTGDYNVIVVDWSRGASNNYPQAVANTRLVGRQLAKFLSFLINNFGVPP 149 (331)
T ss_dssp TSEEEEEE--TT-TT-TTTHHHHHHHHHHCC--S-EEEEEEE-HHHHSS-HHHHHHHHHHHHHHHHHHHHHHHHHH---G
T ss_pred CCCeEEEEcCcCCcccchhHHHHHHHHHHhhccCCceEEEEcchhhccccccchhhhHHHHHHHHHHHHHHHHhhcCCCh
Confidence 689999999999988 43335556665544 479999999974322110001112233446667777777633 67
Q ss_pred ceEEEEEeChhHHHHHHHHHhCCC---ccEEEEeccCCc
Q 022960 117 VITAIIGHSKGGNAVLLYASKYND---ISIVINISGRFN 152 (289)
Q Consensus 117 ~~~~l~G~S~Gg~~a~~~a~~~p~---v~~~v~~~~~~~ 152 (289)
++++|||||+||.+|-.++..... |..+..++|...
T Consensus 150 ~~ihlIGhSLGAHvaG~aG~~~~~~~ki~rItgLDPAgP 188 (331)
T PF00151_consen 150 ENIHLIGHSLGAHVAGFAGKYLKGGGKIGRITGLDPAGP 188 (331)
T ss_dssp GGEEEEEETCHHHHHHHHHHHTTT---SSEEEEES-B-T
T ss_pred hHEEEEeeccchhhhhhhhhhccCcceeeEEEecCcccc
Confidence 799999999999999998887654 999999987543
No 151
>PF10340 DUF2424: Protein of unknown function (DUF2424); InterPro: IPR019436 Sterol homeostasis in eukaryotic cells relies on the reciprocal interconversion of free sterols and steryl esters. In Saccharomyces cerevisiae (Baker's yeast) sterol acetylation requires the acetyltransferase Atf2, whereas deacetylation requires Say1, a membrane-anchored deacetylase with a putative active site in the ER lumen. Lack of Say1 results in the secretion of acetylated sterols into the culture medium, indicating that the substrate specificity of Say1 determines whether acetylated sterols are secreted from the cells or whether they are deacetylated and retained. In S. cerevisiae cells lacking Say1 or Atf2 are sensitive against the plant-derived allylbenzene eugenol and both Say1 and Atf2 affect pregnenolone toxicity, indicating that lipid acetylation acts as a detoxification pathway []. Homologues of Say1 are present in the mammalian genome and can functionally substitute for Say1 in yeast demonstrating that part of this pathway has been evolutionarily conserved [].
Probab=99.10 E-value=3e-09 Score=83.92 Aligned_cols=106 Identities=23% Similarity=0.219 Sum_probs=74.4
Q ss_pred CCcEEEEEcCCCCCCCC-----cchHHHHHHHHHcCccEEEEccccCCCCCCCccccchHHHHHHHHHHHHHHH-hcCCc
Q 022960 44 SKQLVIVCHGFQSTKDR-----IPMVNLAAALEREGISAFRFDFSGNGESEGSFLYGNYRREAEDLRAIVQDFC-AKGRV 117 (289)
Q Consensus 44 ~~~~iv~~hG~~~~~~~-----~~~~~~~~~l~~~G~~v~~~d~~G~G~s~~~~~~~~~~~~~~d~~~~i~~l~-~~~~~ 117 (289)
+.|+||++||+|..-.. .+...+...|. ...++++|+.-.... .....+..+..++.+..++|. ..+.+
T Consensus 121 ~DpVlIYlHGGGY~l~~~p~qi~~L~~i~~~l~--~~SILvLDYsLt~~~---~~~~~yPtQL~qlv~~Y~~Lv~~~G~~ 195 (374)
T PF10340_consen 121 SDPVLIYLHGGGYFLGTTPSQIEFLLNIYKLLP--EVSILVLDYSLTSSD---EHGHKYPTQLRQLVATYDYLVESEGNK 195 (374)
T ss_pred CCcEEEEEcCCeeEecCCHHHHHHHHHHHHHcC--CCeEEEEeccccccc---cCCCcCchHHHHHHHHHHHHHhccCCC
Confidence 46999999999865432 01222333333 358888888743200 123345677788888888887 55888
Q ss_pred eEEEEEeChhHHHHHHHHHhC----C--CccEEEEeccCCccc
Q 022960 118 ITAIIGHSKGGNAVLLYASKY----N--DISIVINISGRFNLK 154 (289)
Q Consensus 118 ~~~l~G~S~Gg~~a~~~a~~~----p--~v~~~v~~~~~~~~~ 154 (289)
+++|+|-|.||.+++.++... + -.+++|+++|+....
T Consensus 196 nI~LmGDSAGGnL~Ls~LqyL~~~~~~~~Pk~~iLISPWv~l~ 238 (374)
T PF10340_consen 196 NIILMGDSAGGNLALSFLQYLKKPNKLPYPKSAILISPWVNLV 238 (374)
T ss_pred eEEEEecCccHHHHHHHHHHHhhcCCCCCCceeEEECCCcCCc
Confidence 999999999999999887643 1 168999999998765
No 152
>PLN02733 phosphatidylcholine-sterol O-acyltransferase
Probab=99.10 E-value=5.4e-10 Score=91.27 Aligned_cols=91 Identities=20% Similarity=0.199 Sum_probs=73.6
Q ss_pred cchHHHHHHHHHcCccEEEEccccCCCCCCCccccchHHHHHHHHHHHHHHHhc-CCceEEEEEeChhHHHHHHHHHhCC
Q 022960 61 IPMVNLAAALEREGISAFRFDFSGNGESEGSFLYGNYRREAEDLRAIVQDFCAK-GRVITAIIGHSKGGNAVLLYASKYN 139 (289)
Q Consensus 61 ~~~~~~~~~l~~~G~~v~~~d~~G~G~s~~~~~~~~~~~~~~d~~~~i~~l~~~-~~~~~~l~G~S~Gg~~a~~~a~~~p 139 (289)
++|..+++.|.+.||.+ ..|++|+|.+.+.. ...++..+++.++++.+.+. +.++++|+||||||.++..++..+|
T Consensus 108 ~~~~~li~~L~~~GY~~-~~dL~g~gYDwR~~--~~~~~~~~~Lk~lIe~~~~~~g~~kV~LVGHSMGGlva~~fl~~~p 184 (440)
T PLN02733 108 YYFHDMIEQLIKWGYKE-GKTLFGFGYDFRQS--NRLPETMDGLKKKLETVYKASGGKKVNIISHSMGGLLVKCFMSLHS 184 (440)
T ss_pred HHHHHHHHHHHHcCCcc-CCCcccCCCCcccc--ccHHHHHHHHHHHHHHHHHHcCCCCEEEEEECHhHHHHHHHHHHCC
Confidence 46999999999999765 78999999987653 22455678888888877654 6779999999999999999998887
Q ss_pred C-----ccEEEEeccCCccc
Q 022960 140 D-----ISIVINISGRFNLK 154 (289)
Q Consensus 140 ~-----v~~~v~~~~~~~~~ 154 (289)
+ |+++|.+++++.-.
T Consensus 185 ~~~~k~I~~~I~la~P~~Gs 204 (440)
T PLN02733 185 DVFEKYVNSWIAIAAPFQGA 204 (440)
T ss_pred HhHHhHhccEEEECCCCCCC
Confidence 5 79999998876543
No 153
>PRK10439 enterobactin/ferric enterobactin esterase; Provisional
Probab=99.07 E-value=9.9e-08 Score=78.09 Aligned_cols=119 Identities=20% Similarity=0.223 Sum_probs=69.4
Q ss_pred CceEEEEEeecC-----CCcEEEEEcCCCCCCCCcchHHHHHHHHHcCcc----EEEEccccCC-CCCCCccccchHH-H
Q 022960 32 GEKLVGILHETG-----SKQLVIVCHGFQSTKDRIPMVNLAAALEREGIS----AFRFDFSGNG-ESEGSFLYGNYRR-E 100 (289)
Q Consensus 32 g~~l~~~~~~~~-----~~~~iv~~hG~~~~~~~~~~~~~~~~l~~~G~~----v~~~d~~G~G-~s~~~~~~~~~~~-~ 100 (289)
|.+..++++.|. +.|+|+++||....... ......+.|.+.|.. ++.+|..+.. ++........+.+ .
T Consensus 191 g~~r~v~VY~P~~y~~~~~PvlyllDG~~w~~~~-~~~~~ld~li~~g~i~P~ivV~id~~~~~~R~~el~~~~~f~~~l 269 (411)
T PRK10439 191 GNSRRVWIYTTGDAAPEERPLAILLDGQFWAESM-PVWPALDSLTHRGQLPPAVYLLIDAIDTTHRSQELPCNADFWLAV 269 (411)
T ss_pred CCceEEEEEECCCCCCCCCCEEEEEECHHhhhcC-CHHHHHHHHHHcCCCCceEEEEECCCCcccccccCCchHHHHHHH
Confidence 444444455442 46899999996533221 234455666666633 5677753211 1111111111221 2
Q ss_pred HHHHHHHHHHHHhc--CCceEEEEEeChhHHHHHHHHHhCCC-ccEEEEeccCC
Q 022960 101 AEDLRAIVQDFCAK--GRVITAIIGHSKGGNAVLLYASKYND-ISIVINISGRF 151 (289)
Q Consensus 101 ~~d~~~~i~~l~~~--~~~~~~l~G~S~Gg~~a~~~a~~~p~-v~~~v~~~~~~ 151 (289)
.+++.-.|+..-.. +.++.+|.|+||||..|+.++.++|+ +.+++.++|.+
T Consensus 270 ~~eLlP~I~~~y~~~~d~~~~~IaG~S~GGl~AL~~al~~Pd~Fg~v~s~Sgs~ 323 (411)
T PRK10439 270 QQELLPQVRAIAPFSDDADRTVVAGQSFGGLAALYAGLHWPERFGCVLSQSGSF 323 (411)
T ss_pred HHHHHHHHHHhCCCCCCccceEEEEEChHHHHHHHHHHhCcccccEEEEeccce
Confidence 23443333332111 45678999999999999999999999 99999999864
No 154
>PF11144 DUF2920: Protein of unknown function (DUF2920); InterPro: IPR022605 This bacterial family of proteins has no known function.
Probab=99.06 E-value=3.1e-08 Score=78.53 Aligned_cols=211 Identities=18% Similarity=0.173 Sum_probs=118.0
Q ss_pred CceEEEEEeecC---CCcEEEEEcCCCCCCCCcchHHHHHHHHHcCccEEE--EccccCCCCCC----------------
Q 022960 32 GEKLVGILHETG---SKQLVIVCHGFQSTKDRIPMVNLAAALEREGISAFR--FDFSGNGESEG---------------- 90 (289)
Q Consensus 32 g~~l~~~~~~~~---~~~~iv~~hG~~~~~~~~~~~~~~~~l~~~G~~v~~--~d~~G~G~s~~---------------- 90 (289)
..+|.+++.-.+ .+..|+++.|+|++....++..+.+.+++. |.|++ +++-++|....
T Consensus 19 ~sKLEyri~ydd~Ke~kaIvfiI~GfG~dan~~~~d~~r~~iA~~-fnvv~I~V~YHCf~~R~q~~A~~~~~~~D~~iLk 97 (403)
T PF11144_consen 19 ESKLEYRISYDDEKEIKAIVFIIPGFGADANSNYLDFMREYIAKK-FNVVVISVNYHCFCNRPQYGAKFYFDDIDKEILK 97 (403)
T ss_pred cceeeEEeecCCCCCceEEEEEeCCcCCCcchHHHHHHHHHHHHh-CCEEEEEeeeeheeeccccCchhcCCHHHHHHHH
Confidence 345666553222 456889999999999876778888889887 66554 56666553210
Q ss_pred -------C--------------------------------------------ccccchH----HHHHHHHHHHHHHHhc-
Q 022960 91 -------S--------------------------------------------FLYGNYR----REAEDLRAIVQDFCAK- 114 (289)
Q Consensus 91 -------~--------------------------------------------~~~~~~~----~~~~d~~~~i~~l~~~- 114 (289)
- +....|. -.+-|+..++.++...
T Consensus 98 ~~L~~i~i~~~~i~~~~~~~~~~~~L~~~I~~lK~~~~L~~d~kl~ls~tl~P~n~EYQN~GIMqAiD~INAl~~l~k~~ 177 (403)
T PF11144_consen 98 KSLEKINIDSESINTYDNAEQIYELLNQNITELKEQGILPQDYKLNLSCTLIPPNGEYQNFGIMQAIDIINALLDLKKIF 177 (403)
T ss_pred HHHHHcCccccccccchhHHHHHHHHHHHHHHHHhcCCCCCCcEEeEEEEecCCchhhhhhHHHHHHHHHHHHHHHHHhh
Confidence 0 0000010 1134555556555554
Q ss_pred ---C-CceEEEEEeChhHHHHHHHHHhCCC-ccEEEEeccCCcccccccccccchhH--hhhhhcCc------------c
Q 022960 115 ---G-RVITAIIGHSKGGNAVLLYASKYND-ISIVINISGRFNLKRGIEGRLGLGYL--QRIKQNGF------------I 175 (289)
Q Consensus 115 ---~-~~~~~l~G~S~Gg~~a~~~a~~~p~-v~~~v~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~------------~ 175 (289)
+ .-+++++|+|.||++|...|.-.|. +++++=-+++....... .++++.. +......+ .
T Consensus 178 ~~~~~~lp~I~~G~s~G~yla~l~~k~aP~~~~~~iDns~~~~p~l~~--I~Gre~~~~~y~~~~~~~~~~~~~i~~~~K 255 (403)
T PF11144_consen 178 PKNGGGLPKIYIGSSHGGYLAHLCAKIAPWLFDGVIDNSSYALPPLRY--IFGREIDFMKYICSGEFFNFKNIRIYCFDK 255 (403)
T ss_pred hcccCCCcEEEEecCcHHHHHHHHHhhCccceeEEEecCccccchhhe--eeeeecCcccccccccccccCCEEEEEEec
Confidence 2 2389999999999999999999999 88888766654422111 1221111 00000000 0
Q ss_pred cccccccccccccC--hhhhhhhhccchhhhhcccccCceEEEEEeCCCCccChhhHHHHHhhCC----CcEEEEE
Q 022960 176 DVRNKKGKLEYRVT--QESLMDRLSTDIHAACHMICQDCRVLTIHGTKDKMVPAEDALEFDKFIP----NHKLHII 245 (289)
Q Consensus 176 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~P~l~i~g~~D~~~~~~~~~~~~~~~~----~~~~~~~ 245 (289)
..+.......+.++ ....+..+..+..........++-.+..|+..|..+|.+.-+.+.+.+. +++++.+
T Consensus 256 t~Wt~n~~S~~~Fs~~~~~IR~iLn~~HL~iqs~~n~~~~yvsYHs~~D~~~p~~~K~~l~~~l~~lgfda~l~lI 331 (403)
T PF11144_consen 256 TFWTRNKNSPYYFSKARYIIRSILNPDHLKIQSNYNKKIIYVSYHSIKDDLAPAEDKEELYEILKNLGFDATLHLI 331 (403)
T ss_pred cccccCCCCccccChHHHHHHHhcChHHHHHHHhcccceEEEEEeccCCCCCCHHHHHHHHHHHHHcCCCeEEEEe
Confidence 00111111111111 2223333333333333322235567778999999999998888777664 5788877
No 155
>COG3319 Thioesterase domains of type I polyketide synthases or non-ribosomal peptide synthetases [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.03 E-value=1.4e-09 Score=82.06 Aligned_cols=100 Identities=15% Similarity=0.174 Sum_probs=81.0
Q ss_pred cEEEEEcCCCCCCCCcchHHHHHHHHHcCccEEEEccccCCCCCCCccccchHHHHHHHHHHHHHHHhcCCceEEEEEeC
Q 022960 46 QLVIVCHGFQSTKDRIPMVNLAAALEREGISAFRFDFSGNGESEGSFLYGNYRREAEDLRAIVQDFCAKGRVITAIIGHS 125 (289)
Q Consensus 46 ~~iv~~hG~~~~~~~~~~~~~~~~l~~~G~~v~~~d~~G~G~s~~~~~~~~~~~~~~d~~~~i~~l~~~~~~~~~l~G~S 125 (289)
|+++++|+.+|... .|..+...|... ..|+.++.||.+.. .....+++++++...+.|..++.. .++.|+|||
T Consensus 1 ~pLF~fhp~~G~~~--~~~~L~~~l~~~-~~v~~l~a~g~~~~--~~~~~~l~~~a~~yv~~Ir~~QP~--GPy~L~G~S 73 (257)
T COG3319 1 PPLFCFHPAGGSVL--AYAPLAAALGPL-LPVYGLQAPGYGAG--EQPFASLDDMAAAYVAAIRRVQPE--GPYVLLGWS 73 (257)
T ss_pred CCEEEEcCCCCcHH--HHHHHHHHhccC-ceeeccccCccccc--ccccCCHHHHHHHHHHHHHHhCCC--CCEEEEeec
Confidence 57999999999984 499999999987 99999999999863 233456677777777777766443 389999999
Q ss_pred hhHHHHHHHHHhC---CC-ccEEEEeccCCc
Q 022960 126 KGGNAVLLYASKY---ND-ISIVINISGRFN 152 (289)
Q Consensus 126 ~Gg~~a~~~a~~~---p~-v~~~v~~~~~~~ 152 (289)
+||.+|..+|.+. .+ |..+++++++..
T Consensus 74 ~GG~vA~evA~qL~~~G~~Va~L~llD~~~~ 104 (257)
T COG3319 74 LGGAVAFEVAAQLEAQGEEVAFLGLLDAVPP 104 (257)
T ss_pred cccHHHHHHHHHHHhCCCeEEEEEEeccCCC
Confidence 9999999998864 33 999999998766
No 156
>KOG3847 consensus Phospholipase A2 (platelet-activating factor acetylhydrolase in humans) [Lipid transport and metabolism]
Probab=99.01 E-value=4.8e-09 Score=79.12 Aligned_cols=106 Identities=15% Similarity=0.215 Sum_probs=74.8
Q ss_pred CCcEEEEEcCCCCCCCCcchHHHHHHHHHcCccEEEEccccCCCCC------C---C---------------cc-----c
Q 022960 44 SKQLVIVCHGFQSTKDRIPMVNLAAALEREGISAFRFDFSGNGESE------G---S---------------FL-----Y 94 (289)
Q Consensus 44 ~~~~iv~~hG~~~~~~~~~~~~~~~~l~~~G~~v~~~d~~G~G~s~------~---~---------------~~-----~ 94 (289)
+-|++||-||++++.. +|..+.-.|+++||.|.+++.|-+..+. . . .. .
T Consensus 117 k~PvvvFSHGLggsRt--~YSa~c~~LAShG~VVaavEHRD~SA~~Ty~~~~~~~n~~lveq~~~ir~v~~~ekef~irN 194 (399)
T KOG3847|consen 117 KYPVVVFSHGLGGSRT--LYSAYCTSLASHGFVVAAVEHRDRSACWTYVLKEKHENEPLVEQWIKIRLVEANEKEFHIRN 194 (399)
T ss_pred CccEEEEecccccchh--hHHHHhhhHhhCceEEEEeecccCcceeEEEecccccCCcccccceEeeeeccCceeEEeeC
Confidence 4589999999999985 5999999999999999999999765431 0 0 00 0
Q ss_pred cchHHHHHHHHHHHHHHHhc------------------------CCceEEEEEeChhHHHHHHHHHhCCCccEEEEeccC
Q 022960 95 GNYRREAEDLRAIVQDFCAK------------------------GRVITAIIGHSKGGNAVLLYASKYNDISIVINISGR 150 (289)
Q Consensus 95 ~~~~~~~~d~~~~i~~l~~~------------------------~~~~~~l~G~S~Gg~~a~~~a~~~p~v~~~v~~~~~ 150 (289)
.....-+.++..+++-+++. +-.++.++|||+||..++...+.+.+++..|+++++
T Consensus 195 eqv~~R~~Ec~~aL~il~~i~~g~~~~~~L~g~~~~~~~~K~nl~~s~~aViGHSFGgAT~i~~ss~~t~FrcaI~lD~W 274 (399)
T KOG3847|consen 195 EQVGQRAQECQKALKILEQINDGGTPDNVLPGNNSDLEQLKGNLDTSQAAVIGHSFGGATSIASSSSHTDFRCAIALDAW 274 (399)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCchhcccCccccHHHHhcchhhhhhhheeccccchhhhhhhccccceeeeeeeeee
Confidence 01112234444444443332 224689999999999999888877778888888875
Q ss_pred C
Q 022960 151 F 151 (289)
Q Consensus 151 ~ 151 (289)
.
T Consensus 275 M 275 (399)
T KOG3847|consen 275 M 275 (399)
T ss_pred e
Confidence 4
No 157
>PF00756 Esterase: Putative esterase; InterPro: IPR000801 This family contains several seemingly unrelated proteins, including human esterase D; mycobacterial antigen 85, which is responsible for the high affinity of mycobacteria to fibronectin; Corynebacterium glutamicum major secreted protein PS1; and hypothetical proteins from Escherichia coli, yeast, mycobacteria and Haemophilus influenzae.; PDB: 3LS2_A 1VA5_B 1DQZ_B 3HRH_A 1DQY_A 2GZR_A 2GZS_A 3GFF_A 1R88_A 3E4D_D ....
Probab=98.97 E-value=1.5e-08 Score=78.18 Aligned_cols=49 Identities=31% Similarity=0.387 Sum_probs=38.5
Q ss_pred HHHHHHHhc---CCceEEEEEeChhHHHHHHHHHhCCC-ccEEEEeccCCccc
Q 022960 106 AIVQDFCAK---GRVITAIIGHSKGGNAVLLYASKYND-ISIVINISGRFNLK 154 (289)
Q Consensus 106 ~~i~~l~~~---~~~~~~l~G~S~Gg~~a~~~a~~~p~-v~~~v~~~~~~~~~ 154 (289)
+++.++.++ ...+..|+|+||||..|+.++.++|+ +.++++++|.+...
T Consensus 101 el~p~i~~~~~~~~~~~~i~G~S~GG~~Al~~~l~~Pd~F~~~~~~S~~~~~~ 153 (251)
T PF00756_consen 101 ELIPYIEANYRTDPDRRAIAGHSMGGYGALYLALRHPDLFGAVIAFSGALDPS 153 (251)
T ss_dssp HHHHHHHHHSSEEECCEEEEEETHHHHHHHHHHHHSTTTESEEEEESEESETT
T ss_pred cchhHHHHhcccccceeEEeccCCCcHHHHHHHHhCccccccccccCcccccc
Confidence 444455444 22238999999999999999999999 99999999876654
No 158
>PF11339 DUF3141: Protein of unknown function (DUF3141); InterPro: IPR024501 This family of proteins appears to be predominantly expressed in Proteobacteria. Their function is unknown.
Probab=98.94 E-value=2.9e-07 Score=74.76 Aligned_cols=84 Identities=15% Similarity=0.203 Sum_probs=56.5
Q ss_pred HHHHHHHHcCccEEEEccccCCCCCCCccccchHHHHHHHHHHHHHHHhc--CCceEEEEEeChhHHHHHHHHHhCCC-c
Q 022960 65 NLAAALEREGISAFRFDFSGNGESEGSFLYGNYRREAEDLRAIVQDFCAK--GRVITAIIGHSKGGNAVLLYASKYND-I 141 (289)
Q Consensus 65 ~~~~~l~~~G~~v~~~d~~G~G~s~~~~~~~~~~~~~~d~~~~i~~l~~~--~~~~~~l~G~S~Gg~~a~~~a~~~p~-v 141 (289)
.+...|.. |+.|+.+.+.- .+....++.+...-...+++.+... +..+.+|+|-|.||+.++.+|+.+|+ +
T Consensus 92 evG~AL~~-GHPvYFV~F~p-----~P~pgQTl~DV~~ae~~Fv~~V~~~hp~~~kp~liGnCQgGWa~~mlAA~~Pd~~ 165 (581)
T PF11339_consen 92 EVGVALRA-GHPVYFVGFFP-----EPEPGQTLEDVMRAEAAFVEEVAERHPDAPKPNLIGNCQGGWAAMMLAALRPDLV 165 (581)
T ss_pred HHHHHHHc-CCCeEEEEecC-----CCCCCCcHHHHHHHHHHHHHHHHHhCCCCCCceEEeccHHHHHHHHHHhcCcCcc
Confidence 34455544 89998887651 1222334555555555566665554 33489999999999999999999999 7
Q ss_pred cEEEEeccCCccc
Q 022960 142 SIVINISGRFNLK 154 (289)
Q Consensus 142 ~~~v~~~~~~~~~ 154 (289)
.-+|+.+++.+..
T Consensus 166 gplvlaGaPlsyw 178 (581)
T PF11339_consen 166 GPLVLAGAPLSYW 178 (581)
T ss_pred CceeecCCCcccc
Confidence 7777666655443
No 159
>COG1770 PtrB Protease II [Amino acid transport and metabolism]
Probab=98.92 E-value=8.7e-08 Score=79.80 Aligned_cols=225 Identities=16% Similarity=0.042 Sum_probs=133.9
Q ss_pred ccceeeEEeeCCCCceEEEEEe-e-----cCCCcEEEEEcCCCCCCCCcchHHHHHHHHHcCccEEEEccccCCCCCCCc
Q 022960 19 VVQRRRVVIPNSHGEKLVGILH-E-----TGSKQLVIVCHGFQSTKDRIPMVNLAAALEREGISAFRFDFSGNGESEGSF 92 (289)
Q Consensus 19 ~~~~~~~~~~~~~g~~l~~~~~-~-----~~~~~~iv~~hG~~~~~~~~~~~~~~~~l~~~G~~v~~~d~~G~G~s~~~~ 92 (289)
....+.+..+..||.++...+. . .++.|++++--|.-|......+....-.|.++|+.....-.||-|+-....
T Consensus 416 ~Y~s~riwa~a~dgv~VPVSLvyrkd~~~~g~~p~lLygYGaYG~s~~p~Fs~~~lSLlDRGfiyAIAHVRGGgelG~~W 495 (682)
T COG1770 416 DYVSRRIWATADDGVQVPVSLVYRKDTKLDGSAPLLLYGYGAYGISMDPSFSIARLSLLDRGFVYAIAHVRGGGELGRAW 495 (682)
T ss_pred HeEEEEEEEEcCCCcEeeEEEEEecccCCCCCCcEEEEEeccccccCCcCcccceeeeecCceEEEEEEeecccccChHH
Confidence 4566777888889988776532 2 347788888777666554434555555677889877777788877654321
Q ss_pred cc----cchHHHHHHHHHHHHHHHhc---CCceEEEEEeChhHHHHHHHHHhCCC-ccEEEEeccCCcccccccccccch
Q 022960 93 LY----GNYRREAEDLRAIVQDFCAK---GRVITAIIGHSKGGNAVLLYASKYND-ISIVINISGRFNLKRGIEGRLGLG 164 (289)
Q Consensus 93 ~~----~~~~~~~~d~~~~i~~l~~~---~~~~~~l~G~S~Gg~~a~~~a~~~p~-v~~~v~~~~~~~~~~~~~~~~~~~ 164 (289)
.. ..-.....|+.++.++|.++ ..++++++|-|.||+++...+...|+ ++++|+-.|+.+.-..+.......
T Consensus 496 Ye~GK~l~K~NTf~DFIa~a~~Lv~~g~~~~~~i~a~GGSAGGmLmGav~N~~P~lf~~iiA~VPFVDvltTMlD~slPL 575 (682)
T COG1770 496 YEDGKLLNKKNTFTDFIAAARHLVKEGYTSPDRIVAIGGSAGGMLMGAVANMAPDLFAGIIAQVPFVDVLTTMLDPSLPL 575 (682)
T ss_pred HHhhhhhhccccHHHHHHHHHHHHHcCcCCccceEEeccCchhHHHHHHHhhChhhhhheeecCCccchhhhhcCCCCCC
Confidence 10 01112247888888888777 45589999999999999999999999 999999999877654333221111
Q ss_pred hHhhhhhcCcccccccccccccccChhhhhhhhccchhhhhcccccCceEEEEEeCCCCccChhhHHHHHhhCC----Cc
Q 022960 165 YLQRIKQNGFIDVRNKKGKLEYRVTQESLMDRLSTDIHAACHMICQDCRVLTIHGTKDKMVPAEDALEFDKFIP----NH 240 (289)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~i~g~~D~~~~~~~~~~~~~~~~----~~ 240 (289)
-.. .+..+-+ ...++...-....+....... +--.|+|++.|..|+.|..-...++.+++. +.
T Consensus 576 T~~-----E~~EWGN-------P~d~e~y~yikSYSPYdNV~a-~~YP~ilv~~Gl~D~rV~YwEpAKWvAkLR~~~td~ 642 (682)
T COG1770 576 TVT-----EWDEWGN-------PLDPEYYDYIKSYSPYDNVEA-QPYPAILVTTGLNDPRVQYWEPAKWVAKLRELKTDG 642 (682)
T ss_pred Ccc-----chhhhCC-------cCCHHHHHHHhhcCchhcccc-CCCCceEEEccccCCccccchHHHHHHHHhhcccCC
Confidence 000 0111111 111122111112222222222 224689999999999887544444443332 22
Q ss_pred --E-EEEEcCCCcccccCc
Q 022960 241 --K-LHIIEGADHEFTSHQ 256 (289)
Q Consensus 241 --~-~~~~~~~gH~~~~~~ 256 (289)
- +..=-++||.-....
T Consensus 643 ~plLlkt~M~aGHgG~SgR 661 (682)
T COG1770 643 NPLLLKTNMDAGHGGASGR 661 (682)
T ss_pred CcEEEEecccccCCCCCCc
Confidence 2 222245899754333
No 160
>PF00450 Peptidase_S10: Serine carboxypeptidase; InterPro: IPR001563 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S10 (clan SC). The type example is carboxypeptidase Y from Saccharomyces cerevisiae (Baker's yeast) []. All known carboxypeptidases are either metallo carboxypeptidases or serine carboxypeptidases (3.4.16.5 from EC and 3.4.16.6 from EC). The catalytic activity of the serine carboxypeptidases, like that of the trypsin family serine proteases, is provided by a charge relay system involving an aspartic acid residue hydrogen-bonded to a histidine, which is itself hydrogen-bonded to a serine []. The sequences surrounding the active site serine and histidine residues are highly conserved in all the serine carboxypeptidases.; GO: 0004185 serine-type carboxypeptidase activity, 0006508 proteolysis; PDB: 1AC5_A 1WHS_B 3SC2_B 1WHT_A 1BCR_A 1BCS_A 1GXS_A 1IVY_A 1WPX_A 1YSC_A ....
Probab=98.91 E-value=7.8e-08 Score=79.92 Aligned_cols=121 Identities=21% Similarity=0.166 Sum_probs=78.5
Q ss_pred CCCceEEEEEeec----CCCcEEEEEcCCCCCCCCcchHHHHH-------------------HHHHcCccEEEEccc-cC
Q 022960 30 SHGEKLVGILHET----GSKQLVIVCHGFQSTKDRIPMVNLAA-------------------ALEREGISAFRFDFS-GN 85 (289)
Q Consensus 30 ~~g~~l~~~~~~~----~~~~~iv~~hG~~~~~~~~~~~~~~~-------------------~l~~~G~~v~~~d~~-G~ 85 (289)
..+..+.+++++. .+.|+||++.|++|++.. +..+.+ .+.+. .+++.+|.| |.
T Consensus 21 ~~~~~lfyw~~~s~~~~~~~Pl~~wlnGGPG~SS~--~g~f~e~GP~~~~~~~~~~l~~n~~sW~~~-an~l~iD~PvGt 97 (415)
T PF00450_consen 21 NENAHLFYWFFESRNDPEDDPLILWLNGGPGCSSM--WGLFGENGPFRINPDGPYTLEDNPYSWNKF-ANLLFIDQPVGT 97 (415)
T ss_dssp TTTEEEEEEEEE-SSGGCSS-EEEEEE-TTTB-TH--HHHHCTTSSEEEETTSTSEEEE-TT-GGGT-SEEEEE--STTS
T ss_pred CCCcEEEEEEEEeCCCCCCccEEEEecCCceeccc--cccccccCceEEeecccccccccccccccc-cceEEEeecCce
Confidence 3677888888764 378999999999987742 322211 12232 679999966 88
Q ss_pred CCCCCCccc---cchHHHHHHHHHHHHHHHhc----CCceEEEEEeChhHHHHHHHHHh----C-----CC--ccEEEEe
Q 022960 86 GESEGSFLY---GNYRREAEDLRAIVQDFCAK----GRVITAIIGHSKGGNAVLLYASK----Y-----ND--ISIVINI 147 (289)
Q Consensus 86 G~s~~~~~~---~~~~~~~~d~~~~i~~l~~~----~~~~~~l~G~S~Gg~~a~~~a~~----~-----p~--v~~~v~~ 147 (289)
|-|...... .+.++.++|+..+|..+-.. ...+++|.|-|+||..+..+|.. . +. ++++++.
T Consensus 98 GfS~~~~~~~~~~~~~~~a~~~~~fl~~f~~~~p~~~~~~~yi~GESYgG~yvP~~a~~i~~~~~~~~~~~inLkGi~IG 177 (415)
T PF00450_consen 98 GFSYGNDPSDYVWNDDQAAEDLYEFLQQFFQKFPEYRSNPLYIAGESYGGHYVPALASYILQQNKKGDQPKINLKGIAIG 177 (415)
T ss_dssp TT-EESSGGGGS-SHHHHHHHHHHHHHHHHHHSGGGTTSEEEEEEETTHHHHHHHHHHHHHHHTCC--STTSEEEEEEEE
T ss_pred EEeeccccccccchhhHHHHHHHHHHHHhhhhhhhccCCCEEEEccccccccchhhHHhhhhccccccccccccccceec
Confidence 888655433 25577788888888766554 34489999999999887666653 2 13 8999999
Q ss_pred ccCCcc
Q 022960 148 SGRFNL 153 (289)
Q Consensus 148 ~~~~~~ 153 (289)
+|..+.
T Consensus 178 ng~~dp 183 (415)
T PF00450_consen 178 NGWIDP 183 (415)
T ss_dssp SE-SBH
T ss_pred Cccccc
Confidence 987654
No 161
>KOG4840 consensus Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]
Probab=98.89 E-value=1.5e-07 Score=67.75 Aligned_cols=108 Identities=15% Similarity=0.192 Sum_probs=79.5
Q ss_pred CCcEEEEEcCCCCCCCC-cchHHHHHHHHHcCccEEEEccccCCCCCCCccccchHHHHHHHHHHHHHHHhcC-CceEEE
Q 022960 44 SKQLVIVCHGFQSTKDR-IPMVNLAAALEREGISAFRFDFSGNGESEGSFLYGNYRREAEDLRAIVQDFCAKG-RVITAI 121 (289)
Q Consensus 44 ~~~~iv~~hG~~~~~~~-~~~~~~~~~l~~~G~~v~~~d~~G~G~s~~~~~~~~~~~~~~d~~~~i~~l~~~~-~~~~~l 121 (289)
.+..|||+-|++..--. .+...+...|.+.+|.++-+.++.+-.. ....++.+.++|+..+++++...+ -..|+|
T Consensus 35 ~~~~vvfiGGLgdgLl~~~y~~~L~~~lde~~wslVq~q~~Ssy~G---~Gt~slk~D~edl~~l~~Hi~~~~fSt~vVL 111 (299)
T KOG4840|consen 35 ESVKVVFIGGLGDGLLICLYTTMLNRYLDENSWSLVQPQLRSSYNG---YGTFSLKDDVEDLKCLLEHIQLCGFSTDVVL 111 (299)
T ss_pred eEEEEEEEcccCCCccccccHHHHHHHHhhccceeeeeeccccccc---cccccccccHHHHHHHHHHhhccCcccceEE
Confidence 34678999998865322 3567889999999999999887732111 123355667899999999886553 348999
Q ss_pred EEeChhHHHHHHHHHhC--CC-ccEEEEeccCCccc
Q 022960 122 IGHSKGGNAVLLYASKY--ND-ISIVINISGRFNLK 154 (289)
Q Consensus 122 ~G~S~Gg~~a~~~a~~~--p~-v~~~v~~~~~~~~~ 154 (289)
+|||.|+.-.+.++... ++ +.+.|+.+|..+..
T Consensus 112 ~GhSTGcQdi~yYlTnt~~~r~iraaIlqApVSDrE 147 (299)
T KOG4840|consen 112 VGHSTGCQDIMYYLTNTTKDRKIRAAILQAPVSDRE 147 (299)
T ss_pred EecCccchHHHHHHHhccchHHHHHHHHhCccchhh
Confidence 99999999988887332 45 88899999877654
No 162
>COG3150 Predicted esterase [General function prediction only]
Probab=98.89 E-value=2e-07 Score=63.95 Aligned_cols=185 Identities=18% Similarity=0.218 Sum_probs=99.7
Q ss_pred EEEEcCCCCCCCCcchHHHHHHHHHcCccEEEEccccCCCCCCCccccchHHHHHHHHHHHHHHHhcCCceEEEEEeChh
Q 022960 48 VIVCHGFQSTKDRIPMVNLAAALEREGISAFRFDFSGNGESEGSFLYGNYRREAEDLRAIVQDFCAKGRVITAIIGHSKG 127 (289)
Q Consensus 48 iv~~hG~~~~~~~~~~~~~~~~l~~~G~~v~~~d~~G~G~s~~~~~~~~~~~~~~d~~~~i~~l~~~~~~~~~l~G~S~G 127 (289)
||++||+.++..+..-..+.+.+... ...+ +.+... ...+....++.+..++... +.+...++|.|+|
T Consensus 2 ilYlHGFnSSP~shka~l~~q~~~~~-~~~i-------~y~~p~-l~h~p~~a~~ele~~i~~~---~~~~p~ivGssLG 69 (191)
T COG3150 2 ILYLHGFNSSPGSHKAVLLLQFIDED-VRDI-------EYSTPH-LPHDPQQALKELEKAVQEL---GDESPLIVGSSLG 69 (191)
T ss_pred eEEEecCCCCcccHHHHHHHHHHhcc-ccce-------eeecCC-CCCCHHHHHHHHHHHHHHc---CCCCceEEeecch
Confidence 89999999987662222233444433 2222 222211 1224466677788887766 4445899999999
Q ss_pred HHHHHHHHHhCCCccEEEEeccCCcccccccccccchhHhhhhhcCcccccccccccccccChhhhhhhhccchhhhhcc
Q 022960 128 GNAVLLYASKYNDISIVINISGRFNLKRGIEGRLGLGYLQRIKQNGFIDVRNKKGKLEYRVTQESLMDRLSTDIHAACHM 207 (289)
Q Consensus 128 g~~a~~~a~~~p~v~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (289)
|+.|.+++.++. +++++ ++|.....+.+...+++.- +......+......+...-......
T Consensus 70 GY~At~l~~~~G-irav~-~NPav~P~e~l~gylg~~e-------------n~ytg~~y~le~~hI~~l~~~~~~~---- 130 (191)
T COG3150 70 GYYATWLGFLCG-IRAVV-FNPAVRPYELLTGYLGRPE-------------NPYTGQEYVLESRHIATLCVLQFRE---- 130 (191)
T ss_pred HHHHHHHHHHhC-Chhhh-cCCCcCchhhhhhhcCCCC-------------CCCCcceEEeehhhHHHHHHhhccc----
Confidence 999999988763 55544 5676554444333322111 0001111111222221111111111
Q ss_pred cccCceEEEEEeCC-CCccChhhHHHHHhhCCCcEEEEEcCCCcccccCchHHHHHHHHHHH
Q 022960 208 ICQDCRVLTIHGTK-DKMVPAEDALEFDKFIPNHKLHIIEGADHEFTSHQDELASLVIQFIK 268 (289)
Q Consensus 208 ~~~~~P~l~i~g~~-D~~~~~~~~~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~i~~fl~ 268 (289)
.+ +...+++.... |++.+... ..+.++.+...+.+|+.|.|. .-+...+.|..|+.
T Consensus 131 l~-~p~~~~lL~qtgDEvLDyr~---a~a~y~~~~~~V~dgg~H~F~-~f~~~l~~i~aF~g 187 (191)
T COG3150 131 LN-RPRCLVLLSQTGDEVLDYRQ---AVAYYHPCYEIVWDGGDHKFK-GFSRHLQRIKAFKG 187 (191)
T ss_pred cC-CCcEEEeecccccHHHHHHH---HHHHhhhhhheeecCCCcccc-chHHhHHHHHHHhc
Confidence 10 22345555555 88765444 445556778888899889874 23556677777763
No 163
>smart00824 PKS_TE Thioesterase. Peptide synthetases are involved in the non-ribosomal synthesis of peptide antibiotics. Next to the operons encoding these enzymes, in almost all cases, are genes that encode proteins that have similarity to the type II fatty acid thioesterases of vertebrates. There are also modules within the peptide synthetases that also share this similarity. With respect to antibiotic production, thioesterases are required for the addition of the last amino acid to the peptide antibiotic, thereby forming a cyclic antibiotic. Thioesterases (non-integrated) have molecular masses of 25-29 kDa.
Probab=98.80 E-value=1.7e-07 Score=70.12 Aligned_cols=85 Identities=21% Similarity=0.156 Sum_probs=59.3
Q ss_pred chHHHHHHHHHcCccEEEEccccCCCCCCCccccchHHHHHHHHHHHHHHHhcCCceEEEEEeChhHHHHHHHHHhC---
Q 022960 62 PMVNLAAALEREGISAFRFDFSGNGESEGSFLYGNYRREAEDLRAIVQDFCAKGRVITAIIGHSKGGNAVLLYASKY--- 138 (289)
Q Consensus 62 ~~~~~~~~l~~~G~~v~~~d~~G~G~s~~~~~~~~~~~~~~d~~~~i~~l~~~~~~~~~l~G~S~Gg~~a~~~a~~~--- 138 (289)
.|..+...|... +.|+.++.+|++.+.... .+++..++.+...+... ....+++++|||+||.++..++...
T Consensus 14 ~~~~~~~~l~~~-~~v~~~~~~g~~~~~~~~--~~~~~~~~~~~~~l~~~--~~~~~~~l~g~s~Gg~~a~~~a~~l~~~ 88 (212)
T smart00824 14 EYARLAAALRGR-RDVSALPLPGFGPGEPLP--ASADALVEAQAEAVLRA--AGGRPFVLVGHSSGGLLAHAVAARLEAR 88 (212)
T ss_pred HHHHHHHhcCCC-ccEEEecCCCCCCCCCCC--CCHHHHHHHHHHHHHHh--cCCCCeEEEEECHHHHHHHHHHHHHHhC
Confidence 488888888764 899999999998654332 23444454444433322 1345799999999999998888763
Q ss_pred CC-ccEEEEeccCC
Q 022960 139 ND-ISIVINISGRF 151 (289)
Q Consensus 139 p~-v~~~v~~~~~~ 151 (289)
+. +.+++++++..
T Consensus 89 ~~~~~~l~~~~~~~ 102 (212)
T smart00824 89 GIPPAAVVLLDTYP 102 (212)
T ss_pred CCCCcEEEEEccCC
Confidence 34 88888876543
No 164
>PF05990 DUF900: Alpha/beta hydrolase of unknown function (DUF900); InterPro: IPR010297 This domain is associated with proteins of unknown function, which are hydrolase-like.
Probab=98.79 E-value=6.7e-08 Score=72.96 Aligned_cols=110 Identities=18% Similarity=0.278 Sum_probs=74.8
Q ss_pred CCCcEEEEEcCCCCCCCCcchHHHHHHHHHcCc--cEEEEccccCCCCCCCc-cccchHHHHHHHHHHHHHHHhc-CCce
Q 022960 43 GSKQLVIVCHGFQSTKDRIPMVNLAAALEREGI--SAFRFDFSGNGESEGSF-LYGNYRREAEDLRAIVQDFCAK-GRVI 118 (289)
Q Consensus 43 ~~~~~iv~~hG~~~~~~~~~~~~~~~~l~~~G~--~v~~~d~~G~G~s~~~~-~~~~~~~~~~d~~~~i~~l~~~-~~~~ 118 (289)
+++.++||+||+..+.+. -....++.....|+ .++.+.||+.|.-..-. ...+.......+.++++.|.+. +..+
T Consensus 16 ~~~~vlvfVHGyn~~f~~-a~~r~aql~~~~~~~~~~i~FsWPS~g~~~~Y~~d~~~a~~s~~~l~~~L~~L~~~~~~~~ 94 (233)
T PF05990_consen 16 PDKEVLVFVHGYNNSFED-ALRRAAQLAHDLGFPGVVILFSWPSDGSLLGYFYDRESARFSGPALARFLRDLARAPGIKR 94 (233)
T ss_pred CCCeEEEEEeCCCCCHHH-HHHHHHHHHHHhCCCceEEEEEcCCCCChhhhhhhhhhHHHHHHHHHHHHHHHHhccCCce
Confidence 467899999999988653 12333333333344 69999999887632211 1122233457788888888777 7889
Q ss_pred EEEEEeChhHHHHHHHHHhC----C-----C-ccEEEEeccCCcc
Q 022960 119 TAIIGHSKGGNAVLLYASKY----N-----D-ISIVINISGRFNL 153 (289)
Q Consensus 119 ~~l~G~S~Gg~~a~~~a~~~----p-----~-v~~~v~~~~~~~~ 153 (289)
|+|++||||+.+.+...... + . +..+|+++|-.+.
T Consensus 95 I~ilaHSMG~rv~~~aL~~l~~~~~~~~~~~~~~~viL~ApDid~ 139 (233)
T PF05990_consen 95 IHILAHSMGNRVLLEALRQLASEGERPDVKARFDNVILAAPDIDN 139 (233)
T ss_pred EEEEEeCchHHHHHHHHHHHHhcccchhhHhhhheEEEECCCCCH
Confidence 99999999999998876542 1 2 6788888875543
No 165
>COG3946 VirJ Type IV secretory pathway, VirJ component [Intracellular trafficking and secretion]
Probab=98.77 E-value=1.8e-07 Score=73.38 Aligned_cols=180 Identities=21% Similarity=0.281 Sum_probs=109.7
Q ss_pred CCcEEEEEcCCCCCCCCcchHHHHHHHHHcCccEEEEccccCCCCCCCccccchHHHHHHHHHHHHHHHhc-CCceEEEE
Q 022960 44 SKQLVIVCHGFQSTKDRIPMVNLAAALEREGISAFRFDFSGNGESEGSFLYGNYRREAEDLRAIVQDFCAK-GRVITAII 122 (289)
Q Consensus 44 ~~~~iv~~hG~~~~~~~~~~~~~~~~l~~~G~~v~~~d~~G~G~s~~~~~~~~~~~~~~d~~~~i~~l~~~-~~~~~~l~ 122 (289)
+...-||+.|-|+..+ .-+.+.+.|.++|+.|+.+|-.-|-.+. .+.++.+.|+..++++...+ +..++.|+
T Consensus 259 sd~~av~~SGDGGWr~--lDk~v~~~l~~~gvpVvGvdsLRYfW~~-----rtPe~~a~Dl~r~i~~y~~~w~~~~~~li 331 (456)
T COG3946 259 SDTVAVFYSGDGGWRD--LDKEVAEALQKQGVPVVGVDSLRYFWSE-----RTPEQIAADLSRLIRFYARRWGAKRVLLI 331 (456)
T ss_pred cceEEEEEecCCchhh--hhHHHHHHHHHCCCceeeeehhhhhhcc-----CCHHHHHHHHHHHHHHHHHhhCcceEEEE
Confidence 3456678888777664 3678899999999999999965433333 24477889999999998776 78899999
Q ss_pred EeChhHHHHHHHHHhCCC-----ccEEEEec--cCCcccccccccccchhHhhhhhcCcccccccccccccccChhhhhh
Q 022960 123 GHSKGGNAVLLYASKYND-----ISIVINIS--GRFNLKRGIEGRLGLGYLQRIKQNGFIDVRNKKGKLEYRVTQESLMD 195 (289)
Q Consensus 123 G~S~Gg~~a~~~a~~~p~-----v~~~v~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (289)
|+|+|+-+.-....+.|. |+.+.+++ -..++.-.+..++...- +.
T Consensus 332 GySfGADvlP~~~n~L~~~~r~~v~~~~ll~l~~~~~fe~~v~gWlg~~~-------------------------~g--- 383 (456)
T COG3946 332 GYSFGADVLPFAYNRLPPATRQRVRMVSLLGLGRTADFEISVEGWLGMAG-------------------------EG--- 383 (456)
T ss_pred eecccchhhHHHHHhCCHHHHHHHHHHHHHhccccceEEEEEeeeeccCC-------------------------cC---
Confidence 999999887776666553 33222222 11111111111111000 00
Q ss_pred hhccchhhhhcccccCceEEEEEeCCCC--ccChhhHHHHHhhCCCcEEEEEcCCCcccccCchHHHHHHHHHHHh
Q 022960 196 RLSTDIHAACHMICQDCRVLTIHGTKDK--MVPAEDALEFDKFIPNHKLHIIEGADHEFTSHQDELASLVIQFIKA 269 (289)
Q Consensus 196 ~~~~~~~~~~~~~~~~~P~l~i~g~~D~--~~~~~~~~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~i~~fl~~ 269 (289)
..+.......+. ...+.+|+|.+|+ .+|... .++.+.+.+|| ||.|-++-+.+++.|++=++.
T Consensus 384 --~~~~~~~~~~l~-~~~v~CiYG~~e~d~~Cp~l~-------~~~~~~v~lpG-gHHFd~dy~~la~~il~~~~~ 448 (456)
T COG3946 384 --AGDVVPDIAKLP-LARVQCIYGQEEKDTACPSLK-------AKGVDTVKLPG-GHHFDGDYEKLAKAILQGMRL 448 (456)
T ss_pred --CCCcchhhhhCC-cceeEEEecCccccccCCcch-------hhcceeEecCC-CcccCccHHHHHHHHHHHHHh
Confidence 001111111111 3468889998765 333222 23678899997 666666677778877776643
No 166
>PF05705 DUF829: Eukaryotic protein of unknown function (DUF829); InterPro: IPR008547 This signature identifies Transmembrane protein 53, that have no known function but are predicted to be integral membrane proteins.
Probab=98.76 E-value=5e-08 Score=74.56 Aligned_cols=209 Identities=12% Similarity=0.067 Sum_probs=110.4
Q ss_pred EEEEEcCCCCCCCCcchHHHHHHHHHcCccEEEEccccCCCCCCCccccchHHHHHHHHHHHHHHHhc---CCceEEEEE
Q 022960 47 LVIVCHGFQSTKDRIPMVNLAAALEREGISAFRFDFSGNGESEGSFLYGNYRREAEDLRAIVQDFCAK---GRVITAIIG 123 (289)
Q Consensus 47 ~iv~~hG~~~~~~~~~~~~~~~~l~~~G~~v~~~d~~G~G~s~~~~~~~~~~~~~~d~~~~i~~l~~~---~~~~~~l~G 123 (289)
++|++=|+.+.... ...+..+...+.|+.++.+-.+-....... ......+..+++.+.+. +..++.+-.
T Consensus 1 plvvl~gW~gA~~~-hl~KY~~~Y~~~g~~il~~~~~~~~~~~~~------~~~~~~~~~l~~~l~~~~~~~~~~il~H~ 73 (240)
T PF05705_consen 1 PLVVLLGWMGAKPK-HLAKYSDLYQDPGFDILLVTSPPADFFWPS------KRLAPAADKLLELLSDSQSASPPPILFHS 73 (240)
T ss_pred CEEEEEeCCCCCHH-HHHHHHHHHHhcCCeEEEEeCCHHHHeeec------cchHHHHHHHHHHhhhhccCCCCCEEEEE
Confidence 46677788876643 355566666668999998876521111000 12223333344444433 223899999
Q ss_pred eChhHHHHHHHHHh-----------CCCccEEEEeccCCcccc-cccccccchhHhhhhhcC---------cccc-cccc
Q 022960 124 HSKGGNAVLLYASK-----------YNDISIVINISGRFNLKR-GIEGRLGLGYLQRIKQNG---------FIDV-RNKK 181 (289)
Q Consensus 124 ~S~Gg~~a~~~a~~-----------~p~v~~~v~~~~~~~~~~-~~~~~~~~~~~~~~~~~~---------~~~~-~~~~ 181 (289)
+|.||...+..... .|.++++|+-+++..... ..... +...+.... .... ....
T Consensus 74 FSnGG~~~~~~l~~~~~~~~~~~~~~~~i~g~I~DS~P~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (240)
T PF05705_consen 74 FSNGGSFLYSQLLEAYQSRKKFGKLLPRIKGIIFDSCPGIPTYSSSARA----FSAALPKSSPRWFVPLWPLLQFLLRLS 149 (240)
T ss_pred EECchHHHHHHHHHHHHhcccccccccccceeEEeCCCCccccccHHHH----HHHHcCccchhhHHHHHHHHHHHHHHH
Confidence 99988776665441 123788887776533221 00000 000000000 0000 0000
Q ss_pred cccccccChhhhhhhhccchhhhhcccccCceEEEEEeCCCCccChhhHHHHHhhCC----CcEEEEEcCCCcccc--cC
Q 022960 182 GKLEYRVTQESLMDRLSTDIHAACHMICQDCRVLTIHGTKDKMVPAEDALEFDKFIP----NHKLHIIEGADHEFT--SH 255 (289)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~i~g~~D~~~~~~~~~~~~~~~~----~~~~~~~~~~gH~~~--~~ 255 (289)
................ .............+|-|+++++.|.+++.+..+++.+... +++...++++.|.-+ .+
T Consensus 150 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~p~lylYS~~D~l~~~~~ve~~~~~~~~~G~~V~~~~f~~S~HV~H~r~~ 228 (240)
T PF05705_consen 150 IISYFIFGYPDVQEYY-RRALNDFANSPSRCPRLYLYSKADPLIPWRDVEEHAEEARRKGWDVRAEKFEDSPHVAHLRKH 228 (240)
T ss_pred HHHHHHhcCCcHHHHH-HHHHhhhhcCCCCCCeEEecCCCCcCcCHHHHHHHHHHHHHcCCeEEEecCCCCchhhhcccC
Confidence 0000000000000000 0011112222447899999999999999998887765543 378888899999955 67
Q ss_pred chHHHHHHHHHH
Q 022960 256 QDELASLVIQFI 267 (289)
Q Consensus 256 ~~~~~~~i~~fl 267 (289)
++++.+.+.+|+
T Consensus 229 p~~Y~~~v~~fw 240 (240)
T PF05705_consen 229 PDRYWRAVDEFW 240 (240)
T ss_pred HHHHHHHHHhhC
Confidence 889999998874
No 167
>PF05577 Peptidase_S28: Serine carboxypeptidase S28; InterPro: IPR008758 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S28 (clan SC). The predicted active site residues for members of this family and family S10 occur in the same order in the sequence: S, D, H. These serine proteases include several eukaryotic enzymes such as lysosomal Pro-X carboxypeptidase, dipeptidyl-peptidase II, and thymus-specific serine peptidase [, , , ].; GO: 0008236 serine-type peptidase activity, 0006508 proteolysis; PDB: 3N2Z_B 3JYH_A 3N0T_C.
Probab=98.75 E-value=2.1e-07 Score=77.60 Aligned_cols=110 Identities=15% Similarity=0.096 Sum_probs=72.1
Q ss_pred CCcEEEEEcCCCCCCCCcchHHHHHHHHHc-CccEEEEccccCCCCCCCc-------cccchHHHHHHHHHHHHHHHhc-
Q 022960 44 SKQLVIVCHGFQSTKDRIPMVNLAAALERE-GISAFRFDFSGNGESEGSF-------LYGNYRREAEDLRAIVQDFCAK- 114 (289)
Q Consensus 44 ~~~~iv~~hG~~~~~~~~~~~~~~~~l~~~-G~~v~~~d~~G~G~s~~~~-------~~~~~~~~~~d~~~~i~~l~~~- 114 (289)
.+|++|++-|=+.-...+....+...|+++ |-.++.++.|.+|.|.+.. ...+.++..+|+..++++++.+
T Consensus 28 ~gpifl~~ggE~~~~~~~~~~~~~~~lA~~~~a~~v~lEHRyYG~S~P~~~~s~~nL~yLt~~QALaD~a~F~~~~~~~~ 107 (434)
T PF05577_consen 28 GGPIFLYIGGEGPIEPFWINNGFMWELAKEFGALVVALEHRYYGKSQPFGDLSTENLRYLTSEQALADLAYFIRYVKKKY 107 (434)
T ss_dssp TSEEEEEE--SS-HHHHHHH-HHHHHHHHHHTEEEEEE--TTSTTB-TTGGGGGSTTTC-SHHHHHHHHHHHHHHHHHHT
T ss_pred CCCEEEEECCCCccchhhhcCChHHHHHHHcCCcEEEeehhhhcCCCCccccchhhHHhcCHHHHHHHHHHHHHHHHHhh
Confidence 377777775543322111223355566665 7889999999999997432 2346688889999999999854
Q ss_pred ---CCceEEEEEeChhHHHHHHHHHhCCC-ccEEEEeccCCcc
Q 022960 115 ---GRVITAIIGHSKGGNAVLLYASKYND-ISIVINISGRFNL 153 (289)
Q Consensus 115 ---~~~~~~l~G~S~Gg~~a~~~a~~~p~-v~~~v~~~~~~~~ 153 (289)
...+++++|-|+||.+|..+-.++|+ |.+.+.-++++..
T Consensus 108 ~~~~~~pwI~~GgSY~G~Laaw~r~kyP~~~~ga~ASSapv~a 150 (434)
T PF05577_consen 108 NTAPNSPWIVFGGSYGGALAAWFRLKYPHLFDGAWASSAPVQA 150 (434)
T ss_dssp TTGCC--EEEEEETHHHHHHHHHHHH-TTT-SEEEEET--CCH
T ss_pred cCCCCCCEEEECCcchhHHHHHHHhhCCCeeEEEEeccceeee
Confidence 33489999999999999999999999 8999988876643
No 168
>cd00312 Esterase_lipase Esterases and lipases (includes fungal lipases, cholinesterases, etc.) These enzymes act on carboxylic esters (EC: 3.1.1.-). The catalytic apparatus involves three residues (catalytic triad): a serine, a glutamate or aspartate and a histidine.These catalytic residues are responsible for the nucleophilic attack on the carbonyl carbon atom of the ester bond. In contrast with other alpha/beta hydrolase fold family members, p-nitrobenzyl esterase and acetylcholine esterase have a Glu instead of Asp at the active site carboxylate.
Probab=98.68 E-value=1.1e-07 Score=80.66 Aligned_cols=106 Identities=20% Similarity=0.157 Sum_probs=69.6
Q ss_pred CCcEEEEEcCCCCCCCCcchHHHHHHHHHc-C-ccEEEEccc----cCCCCCCCccccchHHHHHHHHHHHHHHHhc---
Q 022960 44 SKQLVIVCHGFQSTKDRIPMVNLAAALERE-G-ISAFRFDFS----GNGESEGSFLYGNYRREAEDLRAIVQDFCAK--- 114 (289)
Q Consensus 44 ~~~~iv~~hG~~~~~~~~~~~~~~~~l~~~-G-~~v~~~d~~----G~G~s~~~~~~~~~~~~~~d~~~~i~~l~~~--- 114 (289)
+.|+||++||++....+.... ....|+.. + +.|+.+++| |+.......... ..-..|...+++|++++
T Consensus 94 ~~pv~v~ihGG~~~~g~~~~~-~~~~~~~~~~~~~vv~~~yRlg~~g~~~~~~~~~~~--n~g~~D~~~al~wv~~~i~~ 170 (493)
T cd00312 94 SLPVMVWIHGGGFMFGSGSLY-PGDGLAREGDNVIVVSINYRLGVLGFLSTGDIELPG--NYGLKDQRLALKWVQDNIAA 170 (493)
T ss_pred CCCEEEEEcCCccccCCCCCC-ChHHHHhcCCCEEEEEecccccccccccCCCCCCCc--chhHHHHHHHHHHHHHHHHH
Confidence 468999999976433221111 23445544 3 899999999 333332211111 12256888888888765
Q ss_pred ---CCceEEEEEeChhHHHHHHHHHhC--CC-ccEEEEeccCCc
Q 022960 115 ---GRVITAIIGHSKGGNAVLLYASKY--ND-ISIVINISGRFN 152 (289)
Q Consensus 115 ---~~~~~~l~G~S~Gg~~a~~~a~~~--p~-v~~~v~~~~~~~ 152 (289)
+.++|.|+|+|.||..+..++... +. ++++|+.++...
T Consensus 171 fggd~~~v~~~G~SaG~~~~~~~~~~~~~~~lf~~~i~~sg~~~ 214 (493)
T cd00312 171 FGGDPDSVTIFGESAGGASVSLLLLSPDSKGLFHRAISQSGSAL 214 (493)
T ss_pred hCCCcceEEEEeecHHHHHhhhHhhCcchhHHHHHHhhhcCCcc
Confidence 567999999999999998877763 23 888898887554
No 169
>PF05057 DUF676: Putative serine esterase (DUF676); InterPro: IPR007751 This domain, whose function is unknown, is found within a group of putative lipases.
Probab=98.67 E-value=1.6e-07 Score=70.39 Aligned_cols=90 Identities=21% Similarity=0.205 Sum_probs=49.1
Q ss_pred CCcEEEEEcCCCCCCCCcchHHHHHHHHHc--CccEEEEccccCCCCCCCccccchHHHHHHHHHH-HHHHHhcC--Cce
Q 022960 44 SKQLVIVCHGFQSTKDRIPMVNLAAALERE--GISAFRFDFSGNGESEGSFLYGNYRREAEDLRAI-VQDFCAKG--RVI 118 (289)
Q Consensus 44 ~~~~iv~~hG~~~~~~~~~~~~~~~~l~~~--G~~v~~~d~~G~G~s~~~~~~~~~~~~~~d~~~~-i~~l~~~~--~~~ 118 (289)
+.-.||++||+.++..+ |..+...+... .+.-..+...++..... ....+.+..++.+.+- .+.+.... ..+
T Consensus 3 ~~hLvV~vHGL~G~~~d--~~~~~~~l~~~~~~~~~~~i~~~~~~~n~~-~T~~gI~~~g~rL~~eI~~~~~~~~~~~~~ 79 (217)
T PF05057_consen 3 PVHLVVFVHGLWGNPAD--MRYLKNHLEKIPEDLPNARIVVLGYSNNEF-KTFDGIDVCGERLAEEILEHIKDYESKIRK 79 (217)
T ss_pred CCEEEEEeCCCCCCHHH--HHHHHHHHHHhhhhcchhhhhhhccccccc-ccchhhHHHHHHHHHHHHHhcccccccccc
Confidence 34589999999999865 77777777661 12111222222211111 1122334444433322 22222222 358
Q ss_pred EEEEEeChhHHHHHHHHH
Q 022960 119 TAIIGHSKGGNAVLLYAS 136 (289)
Q Consensus 119 ~~l~G~S~Gg~~a~~~a~ 136 (289)
+.+|||||||.++-.+..
T Consensus 80 IsfIgHSLGGli~r~al~ 97 (217)
T PF05057_consen 80 ISFIGHSLGGLIARYALG 97 (217)
T ss_pred ceEEEecccHHHHHHHHH
Confidence 999999999999876554
No 170
>COG1073 Hydrolases of the alpha/beta superfamily [General function prediction only]
Probab=98.67 E-value=1.2e-06 Score=69.15 Aligned_cols=222 Identities=18% Similarity=0.130 Sum_probs=116.4
Q ss_pred CCcEEEEEcCCCCCCCCcchHHHHHHHHHcCccEEEEccccCCCC----------CCCccccc---hHHHHHHHHHHHHH
Q 022960 44 SKQLVIVCHGFQSTKDRIPMVNLAAALEREGISAFRFDFSGNGES----------EGSFLYGN---YRREAEDLRAIVQD 110 (289)
Q Consensus 44 ~~~~iv~~hG~~~~~~~~~~~~~~~~l~~~G~~v~~~d~~G~G~s----------~~~~~~~~---~~~~~~d~~~~i~~ 110 (289)
+-|.+++.||+++..+. .......++..++.++..+...+|.+ ........ +......+...-..
T Consensus 48 ~~p~v~~~h~~~~~~~~--~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (299)
T COG1073 48 KLPAVVFLHGFGSSKEQ--SLGYAVLLAEKGYRVLAGDASLFGESGGDPRGLADSEGYAEDFSAAVLLLLSEGVLDKDYR 125 (299)
T ss_pred cCceEEeccCccccccC--cchHHHHhhhceeEEeeeccccccccccccccccCccccccccchhheeeeccccccHHHH
Confidence 46789999999999875 33377788888888777765222222 11110000 00000111111111
Q ss_pred HHhcCCceEEEEEeChhHHHHHHHHHhCCC---ccEEEEeccCCccccccccccc-----chhHhhhhh-cCcccccccc
Q 022960 111 FCAKGRVITAIIGHSKGGNAVLLYASKYND---ISIVINISGRFNLKRGIEGRLG-----LGYLQRIKQ-NGFIDVRNKK 181 (289)
Q Consensus 111 l~~~~~~~~~l~G~S~Gg~~a~~~a~~~p~---v~~~v~~~~~~~~~~~~~~~~~-----~~~~~~~~~-~~~~~~~~~~ 181 (289)
.......+....|+++|+..+..++...+. ...++.+.........+..... ......+.. ..+... ...
T Consensus 126 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 204 (299)
T COG1073 126 LLGASLGPRILAGLSLGGPSAGALLAWGPTRLDASRIVVWGESLGGALALLLLGANPELARELIDYLITPGGFAPL-PAP 204 (299)
T ss_pred HHhhhcCcceEEEEEeeccchHHHhhcchhHHHhhcccceeeccCceeeccccccchHHHHhhhhhhccCCCCCCC-Ccc
Confidence 111133578999999999999988887762 3344444332222211111110 111111111 111110 000
Q ss_pred cccccccChhhhhhhhccchhhhhcccccC-ceEEEEEeCCCCccChhhHHHHHhhCCC--cEEEEEcCCCccccc-Cch
Q 022960 182 GKLEYRVTQESLMDRLSTDIHAACHMICQD-CRVLTIHGTKDKMVPAEDALEFDKFIPN--HKLHIIEGADHEFTS-HQD 257 (289)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~P~l~i~g~~D~~~~~~~~~~~~~~~~~--~~~~~~~~~gH~~~~-~~~ 257 (289)
.......... .......+...... .+. +|+|+++|.+|..+|...+..+.+.... .+...+++++|.... ...
T Consensus 205 ~~~~~~~~~~-~~~~~~~d~~~~~~--~i~~~P~l~~~G~~D~~vp~~~~~~~~~~~~~~~~~~~~~~~~~H~~~~~~~~ 281 (299)
T COG1073 205 EAPLDTLPLR-AVLLLLLDPFDDAE--KISPRPVLLVHGERDEVVPLRDAEDLYEAARERPKKLLFVPGGGHIDLYDNPP 281 (299)
T ss_pred cccccccccc-hhhhccCcchhhHh--hcCCcceEEEecCCCcccchhhhHHHHhhhccCCceEEEecCCccccccCccH
Confidence 0000000001 11112222222222 223 7999999999999999999998888766 588888999999652 322
Q ss_pred ---HHHHHHHHHHHhhc
Q 022960 258 ---ELASLVIQFIKANY 271 (289)
Q Consensus 258 ---~~~~~i~~fl~~~~ 271 (289)
+....+.+|+.+.+
T Consensus 282 ~~~~~~~~~~~f~~~~l 298 (299)
T COG1073 282 AVEQALDKLAEFLERHL 298 (299)
T ss_pred HHHHHHHHHHHHHHHhc
Confidence 68889999998764
No 171
>PLN02606 palmitoyl-protein thioesterase
Probab=98.65 E-value=7.4e-06 Score=62.96 Aligned_cols=104 Identities=16% Similarity=0.177 Sum_probs=67.4
Q ss_pred CCcEEEEEcCCCCCCCCcchHHHHHHHHHc-CccEEEEccccCCCCCCCccccchHHHHHHHHHHHHHHHhcCCceEEEE
Q 022960 44 SKQLVIVCHGFQSTKDRIPMVNLAAALERE-GISAFRFDFSGNGESEGSFLYGNYRREAEDLRAIVQDFCAKGRVITAII 122 (289)
Q Consensus 44 ~~~~iv~~hG~~~~~~~~~~~~~~~~l~~~-G~~v~~~d~~G~G~s~~~~~~~~~~~~~~d~~~~i~~l~~~~~~~~~l~ 122 (289)
...+||+.||+|.+....-+..+.+.+.+. |+.+.++. .|-+.. ..-.....++++.+.+.+....+.. +-+.++
T Consensus 25 ~~~PvViwHGlgD~~~~~~~~~~~~~i~~~~~~pg~~v~-ig~~~~--~s~~~~~~~Qv~~vce~l~~~~~L~-~G~naI 100 (306)
T PLN02606 25 LSVPFVLFHGFGGECSNGKVSNLTQFLINHSGYPGTCVE-IGNGVQ--DSLFMPLRQQASIACEKIKQMKELS-EGYNIV 100 (306)
T ss_pred CCCCEEEECCCCcccCCchHHHHHHHHHhCCCCCeEEEE-ECCCcc--cccccCHHHHHHHHHHHHhcchhhc-CceEEE
Confidence 456899999999544333477788888533 67666665 232211 1111334555555555554432222 248999
Q ss_pred EeChhHHHHHHHHHhCCC---ccEEEEeccCC
Q 022960 123 GHSKGGNAVLLYASKYND---ISIVINISGRF 151 (289)
Q Consensus 123 G~S~Gg~~a~~~a~~~p~---v~~~v~~~~~~ 151 (289)
|+|.||.++-.++.+.|+ |+.+|.++++-
T Consensus 101 GfSQGglflRa~ierc~~~p~V~nlISlggph 132 (306)
T PLN02606 101 AESQGNLVARGLIEFCDNAPPVINYVSLGGPH 132 (306)
T ss_pred EEcchhHHHHHHHHHCCCCCCcceEEEecCCc
Confidence 999999999999999754 99999998754
No 172
>PLN02633 palmitoyl protein thioesterase family protein
Probab=98.64 E-value=8.8e-06 Score=62.59 Aligned_cols=105 Identities=17% Similarity=0.180 Sum_probs=70.8
Q ss_pred CCCcEEEEEcCCCCCCCCcchHHHHHHHHHc-CccEEEEccccCCCCCCCccccchHHHHHHHHHHHHHHHhcCCceEEE
Q 022960 43 GSKQLVIVCHGFQSTKDRIPMVNLAAALERE-GISAFRFDFSGNGESEGSFLYGNYRREAEDLRAIVQDFCAKGRVITAI 121 (289)
Q Consensus 43 ~~~~~iv~~hG~~~~~~~~~~~~~~~~l~~~-G~~v~~~d~~G~G~s~~~~~~~~~~~~~~d~~~~i~~l~~~~~~~~~l 121 (289)
....++|+.||.|.+....-...+.+.+.+. |..+.++.. |.+....-.....++++.+.+.+....+.. +-+.+
T Consensus 23 ~~~~P~ViwHG~GD~c~~~g~~~~~~l~~~~~g~~~~~i~i---g~~~~~s~~~~~~~Qve~vce~l~~~~~l~-~G~na 98 (314)
T PLN02633 23 SVSVPFIMLHGIGTQCSDATNANFTQLLTNLSGSPGFCLEI---GNGVGDSWLMPLTQQAEIACEKVKQMKELS-QGYNI 98 (314)
T ss_pred cCCCCeEEecCCCcccCCchHHHHHHHHHhCCCCceEEEEE---CCCccccceeCHHHHHHHHHHHHhhchhhh-CcEEE
Confidence 3456899999999876543466677777553 777777754 333222223344555555555555433222 24899
Q ss_pred EEeChhHHHHHHHHHhCCC---ccEEEEeccCC
Q 022960 122 IGHSKGGNAVLLYASKYND---ISIVINISGRF 151 (289)
Q Consensus 122 ~G~S~Gg~~a~~~a~~~p~---v~~~v~~~~~~ 151 (289)
+|+|.||.++-.++.+.|+ |+.+|.++++-
T Consensus 99 IGfSQGGlflRa~ierc~~~p~V~nlISlggph 131 (314)
T PLN02633 99 VGRSQGNLVARGLIEFCDGGPPVYNYISLAGPH 131 (314)
T ss_pred EEEccchHHHHHHHHHCCCCCCcceEEEecCCC
Confidence 9999999999999998864 99999998754
No 173
>PF00135 COesterase: Carboxylesterase family The prints entry is specific to acetylcholinesterase; InterPro: IPR002018 Higher eukaryotes have many distinct esterases. Among the different types are those which act on carboxylic esters (3.1.1 from EC). Carboxyl-esterases have been classified into three categories (A, B and C) on the basis of differential patterns of inhibition by organophosphates. The sequence of a number of type-B carboxylesterases indicates [, , ] that the majority are evolutionary related. As is the case for lipases and serine proteases, the catalytic apparatus of esterases involves three residues (catalytic triad): a serine, a glutamate or aspartate and a histidine.; PDB: 3B3Q_A 1CLE_B 1GQS_A 2VJD_A 1HBJ_A 2C5G_A 1U65_A 2WG1_A 1FSS_A 3M3D_A ....
Probab=98.63 E-value=3.9e-07 Score=78.37 Aligned_cols=116 Identities=14% Similarity=0.013 Sum_probs=71.5
Q ss_pred EEEEEeecC------CCcEEEEEcCCCCCCCCc--chHHHHHHHHHcCccEEEEccc----cCCCCCCCccccchHHHHH
Q 022960 35 LVGILHETG------SKQLVIVCHGFQSTKDRI--PMVNLAAALEREGISAFRFDFS----GNGESEGSFLYGNYRREAE 102 (289)
Q Consensus 35 l~~~~~~~~------~~~~iv~~hG~~~~~~~~--~~~~~~~~l~~~G~~v~~~d~~----G~G~s~~~~~~~~~~~~~~ 102 (289)
|+..++.|. +.|++|+|||++....+. ....-...+++.++-|+++++| |+-.+...... .-..-..
T Consensus 109 L~LnI~~P~~~~~~~~lPV~v~ihGG~f~~G~~~~~~~~~~~~~~~~~vivVt~nYRlg~~Gfl~~~~~~~~-~gN~Gl~ 187 (535)
T PF00135_consen 109 LYLNIYTPSNASSNSKLPVMVWIHGGGFMFGSGSFPPYDGASLAASKDVIVVTINYRLGAFGFLSLGDLDAP-SGNYGLL 187 (535)
T ss_dssp -EEEEEEETSSSSTTSEEEEEEE--STTTSSCTTSGGGHTHHHHHHHTSEEEEE----HHHHH-BSSSTTSH-BSTHHHH
T ss_pred HHHhhhhccccccccccceEEEeecccccCCCcccccccccccccCCCEEEEEecccccccccccccccccC-chhhhhh
Confidence 454455443 359999999987544321 2333445566778999999999 44333222111 1122357
Q ss_pred HHHHHHHHHHhc------CCceEEEEEeChhHHHHHHHHHhCC--C-ccEEEEeccCC
Q 022960 103 DLRAIVQDFCAK------GRVITAIIGHSKGGNAVLLYASKYN--D-ISIVINISGRF 151 (289)
Q Consensus 103 d~~~~i~~l~~~------~~~~~~l~G~S~Gg~~a~~~a~~~p--~-v~~~v~~~~~~ 151 (289)
|...+++|++++ +.++|.|+|+|.||..+..++..-. . ++++|+.++..
T Consensus 188 Dq~~AL~WV~~nI~~FGGDp~~VTl~G~SAGa~sv~~~l~sp~~~~LF~raI~~SGs~ 245 (535)
T PF00135_consen 188 DQRLALKWVQDNIAAFGGDPDNVTLFGQSAGAASVSLLLLSPSSKGLFHRAILQSGSA 245 (535)
T ss_dssp HHHHHHHHHHHHGGGGTEEEEEEEEEEETHHHHHHHHHHHGGGGTTSBSEEEEES--T
T ss_pred hhHHHHHHHHhhhhhcccCCcceeeeeecccccccceeeecccccccccccccccccc
Confidence 888999999887 5679999999999999887776632 3 99999999844
No 174
>KOG3101 consensus Esterase D [General function prediction only]
Probab=98.59 E-value=3.2e-07 Score=65.55 Aligned_cols=109 Identities=19% Similarity=0.246 Sum_probs=66.8
Q ss_pred CCcEEEEEcCCCCCCCCcchHHHHHHH-HHcCccEEEEcc--ccC---CCCC--------C-------Cc---cccchHH
Q 022960 44 SKQLVIVCHGFQSTKDRIPMVNLAAAL-EREGISAFRFDF--SGN---GESE--------G-------SF---LYGNYRR 99 (289)
Q Consensus 44 ~~~~iv~~hG~~~~~~~~~~~~~~~~l-~~~G~~v~~~d~--~G~---G~s~--------~-------~~---~~~~~~~ 99 (289)
+-|++.++.|+.++.+.+.-....+.. .++|+.|+.+|- ||. |+++ + .+ .+..|+.
T Consensus 43 ~~P~lf~LSGLTCT~~Nfi~Ksg~qq~As~hgl~vV~PDTSPRG~~v~g~~eswDFG~GAGFYvnAt~epw~~~yrMYdY 122 (283)
T KOG3101|consen 43 RCPVLFYLSGLTCTHENFIEKSGFQQQASKHGLAVVAPDTSPRGVEVAGDDESWDFGQGAGFYVNATQEPWAKHYRMYDY 122 (283)
T ss_pred cCceEEEecCCcccchhhHhhhhHHHhHhhcCeEEECCCCCCCccccCCCcccccccCCceeEEecccchHhhhhhHHHH
Confidence 358999999999988763333333333 456899999985 342 1111 0 00 0111222
Q ss_pred HHHHHHHHHHHH-HhcCCceEEEEEeChhHHHHHHHHHhCCC-ccEEEEeccCCc
Q 022960 100 EAEDLRAIVQDF-CAKGRVITAIIGHSKGGNAVLLYASKYND-ISIVINISGRFN 152 (289)
Q Consensus 100 ~~~d~~~~i~~l-~~~~~~~~~l~G~S~Gg~~a~~~a~~~p~-v~~~v~~~~~~~ 152 (289)
..+++.++++.- ...+..++.+.||||||.-|+..+.++|. .+++-..+|-.+
T Consensus 123 v~kELp~~l~~~~~pld~~k~~IfGHSMGGhGAl~~~Lkn~~kykSvSAFAPI~N 177 (283)
T KOG3101|consen 123 VVKELPQLLNSANVPLDPLKVGIFGHSMGGHGALTIYLKNPSKYKSVSAFAPICN 177 (283)
T ss_pred HHHHHHHHhccccccccchhcceeccccCCCceEEEEEcCcccccceeccccccC
Confidence 234444444311 11155689999999999999999999888 777777666443
No 175
>KOG2541 consensus Palmitoyl protein thioesterase [Lipid transport and metabolism; Posttranslational modification, protein turnover, chaperones]
Probab=98.56 E-value=5.4e-06 Score=61.73 Aligned_cols=102 Identities=20% Similarity=0.242 Sum_probs=70.9
Q ss_pred cEEEEEcCCCCCCCCcchHHHHHHHHHc-CccEEEEccccCCCCCCCccccchHHHHHHHHHHHHHHHhcCCceEEEEEe
Q 022960 46 QLVIVCHGFQSTKDRIPMVNLAAALERE-GISAFRFDFSGNGESEGSFLYGNYRREAEDLRAIVQDFCAKGRVITAIIGH 124 (289)
Q Consensus 46 ~~iv~~hG~~~~~~~~~~~~~~~~l~~~-G~~v~~~d~~G~G~s~~~~~~~~~~~~~~d~~~~i~~l~~~~~~~~~l~G~ 124 (289)
-++|++||.+.+..+.-...+.+.+.+. |..|+++|.- -| -.........++++.+.+.+....+. .+-+.++|.
T Consensus 24 ~P~ii~HGigd~c~~~~~~~~~q~l~~~~g~~v~~leig-~g--~~~s~l~pl~~Qv~~~ce~v~~m~~l-sqGynivg~ 99 (296)
T KOG2541|consen 24 VPVIVWHGIGDSCSSLSMANLTQLLEELPGSPVYCLEIG-DG--IKDSSLMPLWEQVDVACEKVKQMPEL-SQGYNIVGY 99 (296)
T ss_pred CCEEEEeccCcccccchHHHHHHHHHhCCCCeeEEEEec-CC--cchhhhccHHHHHHHHHHHHhcchhc-cCceEEEEE
Confidence 5789999999877543467777777776 8889999863 33 11222233455555555555433222 234899999
Q ss_pred ChhHHHHHHHHHhCCC--ccEEEEeccCC
Q 022960 125 SKGGNAVLLYASKYND--ISIVINISGRF 151 (289)
Q Consensus 125 S~Gg~~a~~~a~~~p~--v~~~v~~~~~~ 151 (289)
|.||.++-.++...++ |+.+|.++++-
T Consensus 100 SQGglv~Raliq~cd~ppV~n~ISL~gPh 128 (296)
T KOG2541|consen 100 SQGGLVARALIQFCDNPPVKNFISLGGPH 128 (296)
T ss_pred ccccHHHHHHHHhCCCCCcceeEeccCCc
Confidence 9999999998888766 99999998754
No 176
>PLN02209 serine carboxypeptidase
Probab=98.56 E-value=1.6e-05 Score=65.60 Aligned_cols=124 Identities=12% Similarity=0.033 Sum_probs=77.7
Q ss_pred EeeCCCCceEEEEEeecC----CCcEEEEEcCCCCCCCCcchHHHHH-----------------------HHHHcCccEE
Q 022960 26 VIPNSHGEKLVGILHETG----SKQLVIVCHGFQSTKDRIPMVNLAA-----------------------ALEREGISAF 78 (289)
Q Consensus 26 ~~~~~~g~~l~~~~~~~~----~~~~iv~~hG~~~~~~~~~~~~~~~-----------------------~l~~~G~~v~ 78 (289)
.+....+..+.+++.+.. +.|+++++-|++|++.. +..+.+ .+.+. .+++
T Consensus 45 ~v~~~~~~~lf~~f~es~~~~~~~Pl~lWlnGGPG~SS~--~g~f~e~GP~~~~~~~~~~~~~~l~~n~~sW~~~-anll 121 (437)
T PLN02209 45 GIGEEENVQFFYYFIKSDKNPQEDPLIIWLNGGPGCSCL--SGLFFENGPLALKNKVYNGSVPSLVSTTYSWTKT-ANII 121 (437)
T ss_pred EecCCCCeEEEEEEEecCCCCCCCCEEEEECCCCcHHHh--hhHHHhcCCceeccCCCCCCcccceeCCCchhhc-CcEE
Confidence 333334667888777543 57999999999887642 211110 12222 5789
Q ss_pred EEccc-cCCCCCCCc--cccchHHHHHHHHHHHHHHHhc----CCceEEEEEeChhHHHHHHHHHh----C-----CC--
Q 022960 79 RFDFS-GNGESEGSF--LYGNYRREAEDLRAIVQDFCAK----GRVITAIIGHSKGGNAVLLYASK----Y-----ND-- 140 (289)
Q Consensus 79 ~~d~~-G~G~s~~~~--~~~~~~~~~~d~~~~i~~l~~~----~~~~~~l~G~S~Gg~~a~~~a~~----~-----p~-- 140 (289)
.+|.| |.|-|.... ...+-++.++|+.+++...-+. ...+++|.|.|+||..+..+|.. . +.
T Consensus 122 fiDqPvGtGfSy~~~~~~~~~~~~~a~~~~~fl~~f~~~~p~~~~~~~yi~GESYaG~yvP~~a~~i~~~~~~~~~~~in 201 (437)
T PLN02209 122 FLDQPVGSGFSYSKTPIERTSDTSEVKKIHEFLQKWLIKHPQFLSNPFYVVGDSYSGMIVPALVHEISKGNYICCNPPIN 201 (437)
T ss_pred EecCCCCCCccCCCCCCCccCCHHHHHHHHHHHHHHHHhCccccCCCEEEEecCcCceehHHHHHHHHhhcccccCCcee
Confidence 99965 888775332 2222234567777777655443 23479999999999866666542 1 23
Q ss_pred ccEEEEeccCCc
Q 022960 141 ISIVINISGRFN 152 (289)
Q Consensus 141 v~~~v~~~~~~~ 152 (289)
++++++.+|..+
T Consensus 202 l~Gi~igng~td 213 (437)
T PLN02209 202 LQGYVLGNPITH 213 (437)
T ss_pred eeeEEecCcccC
Confidence 789999888654
No 177
>COG2272 PnbA Carboxylesterase type B [Lipid metabolism]
Probab=98.52 E-value=2.6e-07 Score=74.80 Aligned_cols=117 Identities=15% Similarity=0.074 Sum_probs=74.6
Q ss_pred EEEEEeecC----CCcEEEEEcCCCCCCCC-cchHHHHHHHHHcC-ccEEEEccc-c-CCCCCCCc----cccchHHHHH
Q 022960 35 LVGILHETG----SKQLVIVCHGFQSTKDR-IPMVNLAAALEREG-ISAFRFDFS-G-NGESEGSF----LYGNYRREAE 102 (289)
Q Consensus 35 l~~~~~~~~----~~~~iv~~hG~~~~~~~-~~~~~~~~~l~~~G-~~v~~~d~~-G-~G~s~~~~----~~~~~~~~~~ 102 (289)
|+..++.|. +.|++|+|||++....+ .....--..|+++| +.|+++++| | .|.-.... ....-.--..
T Consensus 80 L~LNIwaP~~~a~~~PVmV~IHGG~y~~Gs~s~~~ydgs~La~~g~vVvVSvNYRLG~lGfL~~~~~~~~~~~~~n~Gl~ 159 (491)
T COG2272 80 LYLNIWAPEVPAEKLPVMVYIHGGGYIMGSGSEPLYDGSALAARGDVVVVSVNYRLGALGFLDLSSLDTEDAFASNLGLL 159 (491)
T ss_pred eeEEeeccCCCCCCCcEEEEEeccccccCCCcccccChHHHHhcCCEEEEEeCcccccceeeehhhccccccccccccHH
Confidence 444455443 56999999997643221 11122345788887 899999998 2 12111000 0000012247
Q ss_pred HHHHHHHHHHhc------CCceEEEEEeChhHHHHHHHHHhCCC----ccEEEEeccCCc
Q 022960 103 DLRAIVQDFCAK------GRVITAIIGHSKGGNAVLLYASKYND----ISIVINISGRFN 152 (289)
Q Consensus 103 d~~~~i~~l~~~------~~~~~~l~G~S~Gg~~a~~~a~~~p~----v~~~v~~~~~~~ 152 (289)
|...+++|++++ +.++|.|+|+|.||+.++.+++. |. +.++|+.++...
T Consensus 160 DqilALkWV~~NIe~FGGDp~NVTl~GeSAGa~si~~Lla~-P~AkGLF~rAi~~Sg~~~ 218 (491)
T COG2272 160 DQILALKWVRDNIEAFGGDPQNVTLFGESAGAASILTLLAV-PSAKGLFHRAIALSGAAS 218 (491)
T ss_pred HHHHHHHHHHHHHHHhCCCccceEEeeccchHHHHHHhhcC-ccchHHHHHHHHhCCCCC
Confidence 888888888776 67799999999999998887664 54 777888887664
No 178
>COG4782 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.51 E-value=1.4e-06 Score=67.87 Aligned_cols=110 Identities=15% Similarity=0.227 Sum_probs=77.2
Q ss_pred CCCcEEEEEcCCCCCCCCcchHHHHHHHHHcCcc--EEEEccccCCCCCCC-ccccchHHHHHHHHHHHHHHHhc-CCce
Q 022960 43 GSKQLVIVCHGFQSTKDRIPMVNLAAALEREGIS--AFRFDFSGNGESEGS-FLYGNYRREAEDLRAIVQDFCAK-GRVI 118 (289)
Q Consensus 43 ~~~~~iv~~hG~~~~~~~~~~~~~~~~l~~~G~~--v~~~d~~G~G~s~~~-~~~~~~~~~~~d~~~~i~~l~~~-~~~~ 118 (289)
..+.++||+||+..+-+.. ....++.....|+. .+.+.||..|.--+- .+..+...-..++..+|++|.+. ..++
T Consensus 114 ~~k~vlvFvHGfNntf~da-v~R~aqI~~d~g~~~~pVvFSWPS~g~l~~Yn~DreS~~~Sr~aLe~~lr~La~~~~~~~ 192 (377)
T COG4782 114 SAKTVLVFVHGFNNTFEDA-VYRTAQIVHDSGNDGVPVVFSWPSRGSLLGYNYDRESTNYSRPALERLLRYLATDKPVKR 192 (377)
T ss_pred CCCeEEEEEcccCCchhHH-HHHHHHHHhhcCCCcceEEEEcCCCCeeeecccchhhhhhhHHHHHHHHHHHHhCCCCce
Confidence 3678999999999886542 44566666666654 677888876653211 12223334468899999999887 4789
Q ss_pred EEEEEeChhHHHHHHHHHhC--------CC-ccEEEEeccCCcc
Q 022960 119 TAIIGHSKGGNAVLLYASKY--------ND-ISIVINISGRFNL 153 (289)
Q Consensus 119 ~~l~G~S~Gg~~a~~~a~~~--------p~-v~~~v~~~~~~~~ 153 (289)
|+|++||||.++++....+. +. ++-+|+.+|-.+.
T Consensus 193 I~ilAHSMGtwl~~e~LrQLai~~~~~l~~ki~nViLAaPDiD~ 236 (377)
T COG4782 193 IYLLAHSMGTWLLMEALRQLAIRADRPLPAKIKNVILAAPDIDV 236 (377)
T ss_pred EEEEEecchHHHHHHHHHHHhccCCcchhhhhhheEeeCCCCCh
Confidence 99999999999998876542 22 7788887775543
No 179
>COG1075 LipA Predicted acetyltransferases and hydrolases with the alpha/beta hydrolase fold [General function prediction only]
Probab=98.47 E-value=8.1e-07 Score=71.01 Aligned_cols=100 Identities=24% Similarity=0.398 Sum_probs=70.1
Q ss_pred CcEEEEEcCCCCCCCCcchHHHHHHHHHcCcc---EEEEccccCCCCCCCccccchHHHHHHHHHHHHHHHhc-CCceEE
Q 022960 45 KQLVIVCHGFQSTKDRIPMVNLAAALEREGIS---AFRFDFSGNGESEGSFLYGNYRREAEDLRAIVQDFCAK-GRVITA 120 (289)
Q Consensus 45 ~~~iv~~hG~~~~~~~~~~~~~~~~l~~~G~~---v~~~d~~G~G~s~~~~~~~~~~~~~~d~~~~i~~l~~~-~~~~~~ 120 (289)
.-++|++||++..... +..+...+...|+. ++.+++++. ... . +.....+.+...++..... +.+++.
T Consensus 59 ~~pivlVhG~~~~~~~--~~~~~~~~~~~g~~~~~~~~~~~~~~-~~~-~----~~~~~~~ql~~~V~~~l~~~ga~~v~ 130 (336)
T COG1075 59 KEPIVLVHGLGGGYGN--FLPLDYRLAILGWLTNGVYAFELSGG-DGT-Y----SLAVRGEQLFAYVDEVLAKTGAKKVN 130 (336)
T ss_pred CceEEEEccCcCCcch--hhhhhhhhcchHHHhccccccccccc-CCC-c----cccccHHHHHHHHHHHHhhcCCCceE
Confidence 4489999999776654 77777777777877 888888865 111 1 1112233344444333222 667899
Q ss_pred EEEeChhHHHHHHHHHhCC--C-ccEEEEeccCCc
Q 022960 121 IIGHSKGGNAVLLYASKYN--D-ISIVINISGRFN 152 (289)
Q Consensus 121 l~G~S~Gg~~a~~~a~~~p--~-v~~~v~~~~~~~ 152 (289)
++|||+||.++..++...+ . |+.++.++++-.
T Consensus 131 LigHS~GG~~~ry~~~~~~~~~~V~~~~tl~tp~~ 165 (336)
T COG1075 131 LIGHSMGGLDSRYYLGVLGGANRVASVVTLGTPHH 165 (336)
T ss_pred EEeecccchhhHHHHhhcCccceEEEEEEeccCCC
Confidence 9999999999999999888 4 999999987643
No 180
>PF10142 PhoPQ_related: PhoPQ-activated pathogenicity-related protein; InterPro: IPR009199 Proteins in this entry are believed to play a role in virulence/pathogenicity in Salmonella. Salmonella typhi PqaA has been shown to be activated by PhoP/Q two-component regulatory system, which regulates many virulence genes []. It has been also shown to confer resistance to antimicrobial peptides (melittin) []. Members of this family are predicted to belong to the alpha/beta hydrolase domain superfamily.
Probab=98.42 E-value=6.1e-06 Score=65.84 Aligned_cols=148 Identities=15% Similarity=0.159 Sum_probs=92.0
Q ss_pred CCceEEEEEeChhHHHHHHHHHhCCCccEEEEecc-CCcccccccccccchhHhhhh-hcC--cccccccccccccccCh
Q 022960 115 GRVITAIIGHSKGGNAVLLYASKYNDISIVINISG-RFNLKRGIEGRLGLGYLQRIK-QNG--FIDVRNKKGKLEYRVTQ 190 (289)
Q Consensus 115 ~~~~~~l~G~S~Gg~~a~~~a~~~p~v~~~v~~~~-~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~~~~~~~~~~~~~~ 190 (289)
.+++++|.|.|==|..++..|+..|+|++++-+.- .++....+.... +... ... +.+... .........
T Consensus 170 ~i~~FvV~GaSKRGWTtWltaa~D~RV~aivP~Vid~LN~~~~l~h~y-----~~yG~~ws~a~~dY~~--~gi~~~l~t 242 (367)
T PF10142_consen 170 NIEKFVVTGASKRGWTTWLTAAVDPRVKAIVPIVIDVLNMKANLEHQY-----RSYGGNWSFAFQDYYN--EGITQQLDT 242 (367)
T ss_pred CccEEEEeCCchHhHHHHHhhccCcceeEEeeEEEccCCcHHHHHHHH-----HHhCCCCccchhhhhH--hCchhhcCC
Confidence 68899999999999999999997777888886643 222222111110 0000 000 000000 000111111
Q ss_pred hhhhhhhc-cchhhhhcccccCceEEEEEeCCCCccChhhHHHHHhhCCC-cEEEEEcCCCcccccCchHHHHHHHHHHH
Q 022960 191 ESLMDRLS-TDIHAACHMICQDCRVLTIHGTKDKMVPAEDALEFDKFIPN-HKLHIIEGADHEFTSHQDELASLVIQFIK 268 (289)
Q Consensus 191 ~~~~~~~~-~~~~~~~~~~~~~~P~l~i~g~~D~~~~~~~~~~~~~~~~~-~~~~~~~~~gH~~~~~~~~~~~~i~~fl~ 268 (289)
..+..... -|...... +++.|-++|.|..|++..++....+.+.+|+ ..+..+|+++|.... .++.+.+..|+.
T Consensus 243 p~f~~L~~ivDP~~Y~~--rL~~PK~ii~atgDeFf~pD~~~~y~d~L~G~K~lr~vPN~~H~~~~--~~~~~~l~~f~~ 318 (367)
T PF10142_consen 243 PEFDKLMQIVDPYSYRD--RLTMPKYIINATGDEFFVPDSSNFYYDKLPGEKYLRYVPNAGHSLIG--SDVVQSLRAFYN 318 (367)
T ss_pred HHHHHHHHhcCHHHHHH--hcCccEEEEecCCCceeccCchHHHHhhCCCCeeEEeCCCCCcccch--HHHHHHHHHHHH
Confidence 11111111 11111112 3489999999999999999999999999986 678889999999755 778888999998
Q ss_pred hhcCC
Q 022960 269 ANYQK 273 (289)
Q Consensus 269 ~~~~~ 273 (289)
.....
T Consensus 319 ~~~~~ 323 (367)
T PF10142_consen 319 RIQNG 323 (367)
T ss_pred HHHcC
Confidence 76543
No 181
>PLN03016 sinapoylglucose-malate O-sinapoyltransferase
Probab=98.42 E-value=6.5e-05 Score=62.12 Aligned_cols=121 Identities=11% Similarity=-0.003 Sum_probs=73.8
Q ss_pred CCceEEEEEeec----CCCcEEEEEcCCCCCCCC-cchHHHH--------------------HHHHHcCccEEEEccc-c
Q 022960 31 HGEKLVGILHET----GSKQLVIVCHGFQSTKDR-IPMVNLA--------------------AALEREGISAFRFDFS-G 84 (289)
Q Consensus 31 ~g~~l~~~~~~~----~~~~~iv~~hG~~~~~~~-~~~~~~~--------------------~~l~~~G~~v~~~d~~-G 84 (289)
.+..+.+++.+. .+.|+|+++-|++|++.. ..+.... ..+.+. .+++.+|.| |
T Consensus 48 ~~~~lfy~f~es~~~~~~~P~~lWlnGGPG~SS~~g~~~e~GP~~~~~~~~~~~~~~l~~n~~sW~~~-anllfiDqPvG 126 (433)
T PLN03016 48 ENVQFFYYFIKSENNPKEDPLLIWLNGGPGCSCLGGIIFENGPVGLKFEVFNGSAPSLFSTTYSWTKM-ANIIFLDQPVG 126 (433)
T ss_pred CCeEEEEEEEecCCCcccCCEEEEEcCCCcHHHHHHHHHhcCCceeeccccCCCCCceeeCCCchhhc-CcEEEecCCCC
Confidence 356788887654 367999999999887642 0011100 112222 679999965 8
Q ss_pred CCCCCCCcc--ccchHHHHHHHHHHHHHHHhc----CCceEEEEEeChhHHHHHHHHHh----C-----CC--ccEEEEe
Q 022960 85 NGESEGSFL--YGNYRREAEDLRAIVQDFCAK----GRVITAIIGHSKGGNAVLLYASK----Y-----ND--ISIVINI 147 (289)
Q Consensus 85 ~G~s~~~~~--~~~~~~~~~d~~~~i~~l~~~----~~~~~~l~G~S~Gg~~a~~~a~~----~-----p~--v~~~v~~ 147 (289)
.|-|..... ...-.+.++++..++...-+. ...+++|.|.|+||..+..+|.. . +. ++++++-
T Consensus 127 tGfSy~~~~~~~~~d~~~a~~~~~fl~~f~~~~p~~~~~~~yi~GESYaG~yvP~la~~i~~~n~~~~~~~inLkGi~iG 206 (433)
T PLN03016 127 SGFSYSKTPIDKTGDISEVKRTHEFLQKWLSRHPQYFSNPLYVVGDSYSGMIVPALVQEISQGNYICCEPPINLQGYMLG 206 (433)
T ss_pred CCccCCCCCCCccCCHHHHHHHHHHHHHHHHhChhhcCCCEEEEccCccceehHHHHHHHHhhcccccCCcccceeeEec
Confidence 888754321 111123346666666544333 33579999999999876666543 1 23 7899988
Q ss_pred ccCCc
Q 022960 148 SGRFN 152 (289)
Q Consensus 148 ~~~~~ 152 (289)
+|..+
T Consensus 207 Ng~t~ 211 (433)
T PLN03016 207 NPVTY 211 (433)
T ss_pred CCCcC
Confidence 88553
No 182
>PF08386 Abhydrolase_4: TAP-like protein; InterPro: IPR013595 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents a C-terminal domain associated with putative hydrolases and bacterial peptidases that belong to MEROPS peptidase family S33 (clan SC). They are related to a tripeptidyl aminopeptidase from Streptomyces lividans (Q54410 from SWISSPROT). A member of this family (Q6E3K7 from SWISSPROT) is thought to be involved in the C-terminal processing of propionicin F, a bacteriocidin characterised from Propionibacterium freudenreichii []. ; GO: 0008233 peptidase activity
Probab=98.42 E-value=1.3e-06 Score=56.93 Aligned_cols=59 Identities=22% Similarity=0.349 Sum_probs=52.6
Q ss_pred CceEEEEEeCCCCccChhhHHHHHhhCCCcEEEEEcCCCcccc-cCchHHHHHHHHHHHh
Q 022960 211 DCRVLTIHGTKDKMVPAEDALEFDKFIPNHKLHIIEGADHEFT-SHQDELASLVIQFIKA 269 (289)
Q Consensus 211 ~~P~l~i~g~~D~~~~~~~~~~~~~~~~~~~~~~~~~~gH~~~-~~~~~~~~~i~~fl~~ 269 (289)
..|+|++.++.|+.+|.+.++.+++.+++++++.+++.||..+ ....-+.+.+.+||.+
T Consensus 34 ~~piL~l~~~~Dp~TP~~~a~~~~~~l~~s~lvt~~g~gHg~~~~~s~C~~~~v~~yl~~ 93 (103)
T PF08386_consen 34 APPILVLGGTHDPVTPYEGARAMAARLPGSRLVTVDGAGHGVYAGGSPCVDKAVDDYLLD 93 (103)
T ss_pred CCCEEEEecCcCCCCcHHHHHHHHHHCCCceEEEEeccCcceecCCChHHHHHHHHHHHc
Confidence 5799999999999999999999999999999999999999976 4446677888899864
No 183
>KOG3724 consensus Negative regulator of COPII vesicle formation [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.33 E-value=4e-06 Score=71.40 Aligned_cols=104 Identities=14% Similarity=0.161 Sum_probs=65.3
Q ss_pred CCcEEEEEcCCCCCCCCcchHHHHHHHHH----------------cCccEEEEccccCCCCCCCccccchHHHHHHHHHH
Q 022960 44 SKQLVIVCHGFQSTKDRIPMVNLAAALER----------------EGISAFRFDFSGNGESEGSFLYGNYRREAEDLRAI 107 (289)
Q Consensus 44 ~~~~iv~~hG~~~~~~~~~~~~~~~~l~~----------------~G~~v~~~d~~G~G~s~~~~~~~~~~~~~~d~~~~ 107 (289)
++-+|+|++|..|+... .+.++....+ ..++.+++|+-+-- . ........++++-+.++
T Consensus 88 sGIPVLFIPGNAGSyKQ--vRSiAS~a~n~y~~~~~e~t~~~d~~~~~DFFaVDFnEe~--t-Am~G~~l~dQtEYV~dA 162 (973)
T KOG3724|consen 88 SGIPVLFIPGNAGSYKQ--VRSIASVAQNAYQGGPFEKTEDRDNPFSFDFFAVDFNEEF--T-AMHGHILLDQTEYVNDA 162 (973)
T ss_pred CCceEEEecCCCCchHH--HHHHHHHHhhhhcCCchhhhhcccCccccceEEEcccchh--h-hhccHhHHHHHHHHHHH
Confidence 46699999999998754 5666655442 13566777765300 0 01122445666677777
Q ss_pred HHHHHhc-------C---CceEEEEEeChhHHHHHHHHHhC---CC-ccEEEEeccCCc
Q 022960 108 VQDFCAK-------G---RVITAIIGHSKGGNAVLLYASKY---ND-ISIVINISGRFN 152 (289)
Q Consensus 108 i~~l~~~-------~---~~~~~l~G~S~Gg~~a~~~a~~~---p~-v~~~v~~~~~~~ 152 (289)
|.++... . +..|+++||||||.+|...+... ++ |.-++..+++..
T Consensus 163 Ik~ILslYr~~~e~~~p~P~sVILVGHSMGGiVAra~~tlkn~~~~sVntIITlssPH~ 221 (973)
T KOG3724|consen 163 IKYILSLYRGEREYASPLPHSVILVGHSMGGIVARATLTLKNEVQGSVNTIITLSSPHA 221 (973)
T ss_pred HHHHHHHhhcccccCCCCCceEEEEeccchhHHHHHHHhhhhhccchhhhhhhhcCccc
Confidence 7666443 1 45699999999999998765432 23 666776665543
No 184
>COG0627 Predicted esterase [General function prediction only]
Probab=98.33 E-value=1.3e-05 Score=62.97 Aligned_cols=225 Identities=16% Similarity=0.120 Sum_probs=112.2
Q ss_pred CCcEEEEEcCCCCCCCCc-chHHHHHHHHHcCccEEEEccc--cCC------------CCC---CCc----c-ccchHHH
Q 022960 44 SKQLVIVCHGFQSTKDRI-PMVNLAAALEREGISAFRFDFS--GNG------------ESE---GSF----L-YGNYRRE 100 (289)
Q Consensus 44 ~~~~iv~~hG~~~~~~~~-~~~~~~~~l~~~G~~v~~~d~~--G~G------------~s~---~~~----~-~~~~~~~ 100 (289)
+-|+++++||..++.... ....+-+.....|+.++++|-. +.+ .|- ... . ...+++.
T Consensus 53 ~ipV~~~l~G~t~~~~~~~~~~g~~~~a~~~g~~~~~p~t~~~~~~~~~~vv~p~G~~~sfY~d~~~~~~~~~~~q~~tf 132 (316)
T COG0627 53 DIPVLYLLSGLTCNEPNVYLLDGLRRQADESGWAVVTPDTSPRGAGVNISVVMPLGGGASFYSDWTQPPWASGPYQWETF 132 (316)
T ss_pred CCCEEEEeCCCCCCCCceEeccchhhhhhhcCeEEecCCCCcccCCCCccccccCCCccceecccccCccccCccchhHH
Confidence 457889999999885432 2334555556668888886332 222 110 000 0 1222222
Q ss_pred -HHHHHHHHHHHHhcCC--ceEEEEEeChhHHHHHHHHHhCCC-ccEEEEeccCCcccccccccccchhHhhhhhcCccc
Q 022960 101 -AEDLRAIVQDFCAKGR--VITAIIGHSKGGNAVLLYASKYND-ISIVINISGRFNLKRGIEGRLGLGYLQRIKQNGFID 176 (289)
Q Consensus 101 -~~d~~~~i~~l~~~~~--~~~~l~G~S~Gg~~a~~~a~~~p~-v~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (289)
.+++...++....... ++..++||||||+-|+.+|.++|+ ++.+..++|.+.......... .+...........
T Consensus 133 l~~ELP~~~~~~f~~~~~~~~~aI~G~SMGG~GAl~lA~~~pd~f~~~sS~Sg~~~~s~~~~~~~--~~~~~~g~~~~~~ 210 (316)
T COG0627 133 LTQELPALWEAAFPADGTGDGRAIAGHSMGGYGALKLALKHPDRFKSASSFSGILSPSSPWGPTL--AMGDPWGGKAFNA 210 (316)
T ss_pred HHhhhhHHHHHhcCcccccCCceeEEEeccchhhhhhhhhCcchhceeccccccccccccccccc--cccccccCccHHH
Confidence 3445544432211111 268999999999999999999988 999999998877653332220 0000000000000
Q ss_pred ccccccc-cccccChhhhhhhhccc--hhhhhcccccCceEEEEEeCCCCccC--hhhHHHHHhhCC----CcEEEEEcC
Q 022960 177 VRNKKGK-LEYRVTQESLMDRLSTD--IHAACHMICQDCRVLTIHGTKDKMVP--AEDALEFDKFIP----NHKLHIIEG 247 (289)
Q Consensus 177 ~~~~~~~-~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~P~l~i~g~~D~~~~--~~~~~~~~~~~~----~~~~~~~~~ 247 (289)
....... .-...+.....+.+... ........ ...++++-+|..|.+.. ....+.+.+.+. +..+...++
T Consensus 211 ~~G~~~~~~w~~~D~~~~~~~l~~~~~~~~~~~~~-~~~~~~~d~g~ad~~~~~~~~~~~~~~~a~~~~g~~~~~~~~~~ 289 (316)
T COG0627 211 MLGPDSDPAWQENDPLSLIEKLVANANTRIWVYGG-SPPELLIDNGPADFFLAANNLSTRAFAEALRAAGIPNGVRDQPG 289 (316)
T ss_pred hcCCCccccccccCchhHHHHhhhcccccceeccc-CCCccccccccchhhhhhcccCHHHHHHHHHhcCCCceeeeCCC
Confidence 0000001 00111112222211100 00000000 24577788899888764 223455555543 356666678
Q ss_pred CCcccccCchHHHHHHHHHHHhhcC
Q 022960 248 ADHEFTSHQDELASLVIQFIKANYQ 272 (289)
Q Consensus 248 ~gH~~~~~~~~~~~~i~~fl~~~~~ 272 (289)
+.|.+.. -....+....|+...+.
T Consensus 290 G~Hsw~~-w~~~l~~~~~~~a~~l~ 313 (316)
T COG0627 290 GDHSWYF-WASQLADHLPWLAGALG 313 (316)
T ss_pred CCcCHHH-HHHHHHHHHHHHHHHhc
Confidence 8898521 23455556666666554
No 185
>PF04301 DUF452: Protein of unknown function (DUF452); InterPro: IPR007398 This is a family of uncharacterised proteins.
Probab=98.32 E-value=4.3e-06 Score=61.31 Aligned_cols=81 Identities=17% Similarity=0.213 Sum_probs=51.5
Q ss_pred CCCcEEEEEcCCCCCCCCcchHHHHHHHHHcCcc-EEEEccccCCCCCCCccccchHHHHHHHHHHHHHHHhcCCceEEE
Q 022960 43 GSKQLVIVCHGFQSTKDRIPMVNLAAALEREGIS-AFRFDFSGNGESEGSFLYGNYRREAEDLRAIVQDFCAKGRVITAI 121 (289)
Q Consensus 43 ~~~~~iv~~hG~~~~~~~~~~~~~~~~l~~~G~~-v~~~d~~G~G~s~~~~~~~~~~~~~~d~~~~i~~l~~~~~~~~~l 121 (289)
..+..|||..|+|.+... +..+. ...++. ++++|+|.. +++ .| +. ..+.+.|
T Consensus 9 ~~~~LilfF~GWg~d~~~--f~hL~---~~~~~D~l~~yDYr~l----------~~d---~~----~~-----~y~~i~l 61 (213)
T PF04301_consen 9 NGKELILFFAGWGMDPSP--FSHLI---LPENYDVLICYDYRDL----------DFD---FD----LS-----GYREIYL 61 (213)
T ss_pred CCCeEEEEEecCCCChHH--hhhcc---CCCCccEEEEecCccc----------ccc---cc----cc-----cCceEEE
Confidence 345799999999988643 33221 123455 466788721 111 01 11 5678999
Q ss_pred EEeChhHHHHHHHHHhCCCccEEEEeccCC
Q 022960 122 IGHSKGGNAVLLYASKYNDISIVINISGRF 151 (289)
Q Consensus 122 ~G~S~Gg~~a~~~a~~~p~v~~~v~~~~~~ 151 (289)
|++|||-.+|..+.... .++..|.++|..
T Consensus 62 vAWSmGVw~A~~~l~~~-~~~~aiAINGT~ 90 (213)
T PF04301_consen 62 VAWSMGVWAANRVLQGI-PFKRAIAINGTP 90 (213)
T ss_pred EEEeHHHHHHHHHhccC-CcceeEEEECCC
Confidence 99999999998876543 367777777643
No 186
>PF02450 LCAT: Lecithin:cholesterol acyltransferase; InterPro: IPR003386 Lecithin:cholesterol acyltransferase (LACT), also known as phosphatidylcholine-sterol acyltransferase (2.3.1.43 from EC), is involved in extracellular metabolism of plasma lipoproteins, including cholesterol. It esterifies the free cholesterol transported in plasma lipoproteins, and is activated by apolipoprotein A-I. Defects in LACT cause Norum and Fish eye diseases. This family also includes phospholipid:diacylglycerol acyltransferase (PDAT)(2.3.1.158 from EC), which is involved in triacylglycerol formation by an acyl-CoA independent pathway. The enzyme specifically transfers acyl groups from the sn-2 position of a phospholipid to diacylglycerol, thus forming an sn-1-lysophospholipid [].; GO: 0008374 O-acyltransferase activity, 0006629 lipid metabolic process
Probab=98.30 E-value=4.3e-06 Score=68.36 Aligned_cols=83 Identities=19% Similarity=0.243 Sum_probs=63.0
Q ss_pred chHHHHHHHHHcCccE-----EE-EccccCCCCCCCccccchHHHHHHHHHHHHHHHhcCCceEEEEEeChhHHHHHHHH
Q 022960 62 PMVNLAAALEREGISA-----FR-FDFSGNGESEGSFLYGNYRREAEDLRAIVQDFCAKGRVITAIIGHSKGGNAVLLYA 135 (289)
Q Consensus 62 ~~~~~~~~l~~~G~~v-----~~-~d~~G~G~s~~~~~~~~~~~~~~d~~~~i~~l~~~~~~~~~l~G~S~Gg~~a~~~a 135 (289)
+|..+++.|.+.||.. .+ +|+|- ... ..+.....+...|+.+.....++++|+||||||.++..++
T Consensus 66 ~~~~li~~L~~~GY~~~~~l~~~pYDWR~-------~~~-~~~~~~~~lk~~ie~~~~~~~~kv~li~HSmGgl~~~~fl 137 (389)
T PF02450_consen 66 YFAKLIENLEKLGYDRGKDLFAAPYDWRL-------SPA-ERDEYFTKLKQLIEEAYKKNGKKVVLIAHSMGGLVARYFL 137 (389)
T ss_pred hHHHHHHHHHhcCcccCCEEEEEeechhh-------chh-hHHHHHHHHHHHHHHHHHhcCCcEEEEEeCCCchHHHHHH
Confidence 5899999999988752 22 67772 111 2345567788888887666677999999999999999988
Q ss_pred HhCC------C-ccEEEEeccCCc
Q 022960 136 SKYN------D-ISIVINISGRFN 152 (289)
Q Consensus 136 ~~~p------~-v~~~v~~~~~~~ 152 (289)
...+ + |+++|.+++++.
T Consensus 138 ~~~~~~~W~~~~i~~~i~i~~p~~ 161 (389)
T PF02450_consen 138 QWMPQEEWKDKYIKRFISIGTPFG 161 (389)
T ss_pred HhccchhhHHhhhhEEEEeCCCCC
Confidence 8762 2 999999998764
No 187
>PF02089 Palm_thioest: Palmitoyl protein thioesterase; InterPro: IPR002472 Neuronal ceroid lipofuscinoses (NCL) represent a group of encephalopathies that occur in 1 in 12,500 children. Mutations in the palmitoyl protein thioesterase gene causing infantile neuronal ceroid lipofuscinosis []. The most common mutation results in intracellular accumulation of the polypeptide and undetectable enzyme activity in the brain. Direct sequencing of cDNAs derived from brain RNA of INCL patients has shown a mis-sense transversion of A to T at nucleotide position 364, which results in substitution of Trp for Arg at position 122 in the protein - Arg 122 is immediately adjacent to a lipase consensus sequence that contains the putative active site Ser of PPT. The occurrence of this and two other independent mutations in the PPT gene strongly suggests that defects in this gene cause INCL.; GO: 0008474 palmitoyl-(protein) hydrolase activity, 0006464 protein modification process; PDB: 3GRO_B 1PJA_A 1EXW_A 1EH5_A 1EI9_A.
Probab=98.29 E-value=5.7e-06 Score=63.02 Aligned_cols=107 Identities=21% Similarity=0.299 Sum_probs=54.5
Q ss_pred CCCcEEEEEcCCCCCCCC-cchHHHHHHHHHc--CccEEEEccccCCCC-CCCc-cccchHHHHHHHHHHHHHHHhcCCc
Q 022960 43 GSKQLVIVCHGFQSTKDR-IPMVNLAAALERE--GISAFRFDFSGNGES-EGSF-LYGNYRREAEDLRAIVQDFCAKGRV 117 (289)
Q Consensus 43 ~~~~~iv~~hG~~~~~~~-~~~~~~~~~l~~~--G~~v~~~d~~G~G~s-~~~~-~~~~~~~~~~d~~~~i~~l~~~~~~ 117 (289)
.+..+||+.||+|.+... ..+..+.+.+.+. |..|.+++.- -+.+ +... ......+.++.+.+.+....+.. +
T Consensus 3 ~~~~PvViwHGmGD~~~~~~~m~~i~~~i~~~~PG~yV~si~ig-~~~~~D~~~s~f~~v~~Qv~~vc~~l~~~p~L~-~ 80 (279)
T PF02089_consen 3 PSPLPVVIWHGMGDSCCNPSSMGSIKELIEEQHPGTYVHSIEIG-NDPSEDVENSFFGNVNDQVEQVCEQLANDPELA-N 80 (279)
T ss_dssp TSS--EEEE--TT--S--TTTHHHHHHHHHHHSTT--EEE--SS-SSHHHHHHHHHHSHHHHHHHHHHHHHHH-GGGT-T
T ss_pred CCCCcEEEEEcCccccCChhHHHHHHHHHHHhCCCceEEEEEEC-CCcchhhhhhHHHHHHHHHHHHHHHHhhChhhh-c
Confidence 345689999999976421 1255555555544 6778888763 1111 1000 01222333444444444322221 3
Q ss_pred eEEEEEeChhHHHHHHHHHhCCC--ccEEEEeccCC
Q 022960 118 ITAIIGHSKGGNAVLLYASKYND--ISIVINISGRF 151 (289)
Q Consensus 118 ~~~l~G~S~Gg~~a~~~a~~~p~--v~~~v~~~~~~ 151 (289)
-+.++|+|.||.++-.++.+.+. |+.+|.++++-
T Consensus 81 G~~~IGfSQGgl~lRa~vq~c~~~~V~nlISlggph 116 (279)
T PF02089_consen 81 GFNAIGFSQGGLFLRAYVQRCNDPPVHNLISLGGPH 116 (279)
T ss_dssp -EEEEEETCHHHHHHHHHHH-TSS-EEEEEEES--T
T ss_pred ceeeeeeccccHHHHHHHHHCCCCCceeEEEecCcc
Confidence 59999999999999999999876 99999998754
No 188
>COG2382 Fes Enterochelin esterase and related enzymes [Inorganic ion transport and metabolism]
Probab=98.27 E-value=3.5e-05 Score=58.90 Aligned_cols=108 Identities=12% Similarity=0.067 Sum_probs=61.6
Q ss_pred CCcEEEEEcCCCCCCCCcchHHHHHHHHHcC----ccEEEEccccCCCCCCCccccchHHHHHH-HHHHHHHHHhc----
Q 022960 44 SKQLVIVCHGFQSTKDRIPMVNLAAALEREG----ISAFRFDFSGNGESEGSFLYGNYRREAED-LRAIVQDFCAK---- 114 (289)
Q Consensus 44 ~~~~iv~~hG~~~~~~~~~~~~~~~~l~~~G----~~v~~~d~~G~G~s~~~~~~~~~~~~~~d-~~~~i~~l~~~---- 114 (289)
+.|++++.||-....... .....+.|...| -.++.+|.--.-.. ...........+. ..+++=++++.
T Consensus 97 k~pvl~~~DG~~~~~~g~-i~~~~dsli~~g~i~pai~vgid~~d~~~R--~~~~~~n~~~~~~L~~eLlP~v~~~yp~~ 173 (299)
T COG2382 97 KYPVLYLQDGQDWFRSGR-IPRILDSLIAAGEIPPAILVGIDYIDVKKR--REELHCNEAYWRFLAQELLPYVEERYPTS 173 (299)
T ss_pred cccEEEEeccHHHHhcCC-hHHHHHHHHHcCCCCCceEEecCCCCHHHH--HHHhcccHHHHHHHHHHhhhhhhccCccc
Confidence 678999999854332212 233444444443 33555554310000 0001111222222 23344444443
Q ss_pred -CCceEEEEEeChhHHHHHHHHHhCCC-ccEEEEeccCCccc
Q 022960 115 -GRVITAIIGHSKGGNAVLLYASKYND-ISIVINISGRFNLK 154 (289)
Q Consensus 115 -~~~~~~l~G~S~Gg~~a~~~a~~~p~-v~~~v~~~~~~~~~ 154 (289)
....-+|.|.|+||.+++..+..+|+ +..++..+|.+...
T Consensus 174 ~~a~~r~L~G~SlGG~vsL~agl~~Pe~FG~V~s~Sps~~~~ 215 (299)
T COG2382 174 ADADGRVLAGDSLGGLVSLYAGLRHPERFGHVLSQSGSFWWT 215 (299)
T ss_pred ccCCCcEEeccccccHHHHHHHhcCchhhceeeccCCccccC
Confidence 23456999999999999999999999 88888888866543
No 189
>KOG2183 consensus Prolylcarboxypeptidase (angiotensinase C) [Posttranslational modification, protein turnover, chaperones; General function prediction only]
Probab=98.22 E-value=5.5e-06 Score=65.49 Aligned_cols=102 Identities=17% Similarity=0.097 Sum_probs=74.5
Q ss_pred cEEEEEcCCCCCCCC-----cchHHHHHHHHHcCccEEEEccccCCCCCCC----------ccccchHHHHHHHHHHHHH
Q 022960 46 QLVIVCHGFQSTKDR-----IPMVNLAAALEREGISAFRFDFSGNGESEGS----------FLYGNYRREAEDLRAIVQD 110 (289)
Q Consensus 46 ~~iv~~hG~~~~~~~-----~~~~~~~~~l~~~G~~v~~~d~~G~G~s~~~----------~~~~~~~~~~~d~~~~i~~ 110 (289)
.+|+|.-|.-++.+. .+...+++.+ +--++.++.|-+|+|.+- -...+.++...|..+++..
T Consensus 81 gPIffYtGNEGdie~Fa~ntGFm~D~Ap~~---~AllVFaEHRyYGeS~PFG~~s~k~~~hlgyLtseQALADfA~ll~~ 157 (492)
T KOG2183|consen 81 GPIFFYTGNEGDIEWFANNTGFMWDLAPEL---KALLVFAEHRYYGESLPFGSQSYKDARHLGYLTSEQALADFAELLTF 157 (492)
T ss_pred CceEEEeCCcccHHHHHhccchHHhhhHhh---CceEEEeehhccccCCCCcchhccChhhhccccHHHHHHHHHHHHHH
Confidence 568888887776542 1222233333 567899999999998631 1233446777999999999
Q ss_pred HHhc---CCceEEEEEeChhHHHHHHHHHhCCC-ccEEEEeccC
Q 022960 111 FCAK---GRVITAIIGHSKGGNAVLLYASKYND-ISIVINISGR 150 (289)
Q Consensus 111 l~~~---~~~~~~l~G~S~Gg~~a~~~a~~~p~-v~~~v~~~~~ 150 (289)
|+.. ...+|+.+|-|+||++|..+=.++|. |.|.+..+.+
T Consensus 158 lK~~~~a~~~pvIafGGSYGGMLaAWfRlKYPHiv~GAlAaSAP 201 (492)
T KOG2183|consen 158 LKRDLSAEASPVIAFGGSYGGMLAAWFRLKYPHIVLGALAASAP 201 (492)
T ss_pred HhhccccccCcEEEecCchhhHHHHHHHhcChhhhhhhhhccCc
Confidence 9887 45689999999999999999999999 6666655543
No 190
>KOG1282 consensus Serine carboxypeptidases (lysosomal cathepsin A) [Posttranslational modification, protein turnover, chaperones; Amino acid transport and metabolism]
Probab=98.17 E-value=0.00037 Score=57.47 Aligned_cols=130 Identities=18% Similarity=0.070 Sum_probs=80.7
Q ss_pred cceeeEEeeC--CCCceEEEEEeec----CCCcEEEEEcCCCCCCCCcchHHHHHHH-------------------HHcC
Q 022960 20 VQRRRVVIPN--SHGEKLVGILHET----GSKQLVIVCHGFQSTKDRIPMVNLAAAL-------------------EREG 74 (289)
Q Consensus 20 ~~~~~~~~~~--~~g~~l~~~~~~~----~~~~~iv~~hG~~~~~~~~~~~~~~~~l-------------------~~~G 74 (289)
+......+.. ..+..+.|++.+. ...|.||++-|++|.+.- . .+..++ .+.
T Consensus 42 f~~ysGYv~v~~~~~~~LFYwf~eS~~~P~~dPlvLWLnGGPGCSSl--~-G~~~E~GPf~v~~~G~tL~~N~ySWnk~- 117 (454)
T KOG1282|consen 42 FKQYSGYVTVNESEGRQLFYWFFESENNPETDPLVLWLNGGPGCSSL--G-GLFEENGPFRVKYNGKTLYLNPYSWNKE- 117 (454)
T ss_pred cccccceEECCCCCCceEEEEEEEccCCCCCCCEEEEeCCCCCccch--h-hhhhhcCCeEEcCCCCcceeCCcccccc-
Confidence 3334444444 3688899988764 368899999999988742 1 222221 111
Q ss_pred ccEEEEccc-cCCCCCCCc--c-ccchHHHHHHHHHHHH-HHHhc---CCceEEEEEeChhHHHHHHHHHh----C----
Q 022960 75 ISAFRFDFS-GNGESEGSF--L-YGNYRREAEDLRAIVQ-DFCAK---GRVITAIIGHSKGGNAVLLYASK----Y---- 138 (289)
Q Consensus 75 ~~v~~~d~~-G~G~s~~~~--~-~~~~~~~~~d~~~~i~-~l~~~---~~~~~~l~G~S~Gg~~a~~~a~~----~---- 138 (289)
-+++.+|.| |.|-|-... . ..+-+..++|...++. ++.+. .-.+++|.|-|++|...-.+|.. +
T Consensus 118 aNiLfLd~PvGvGFSYs~~~~~~~~~D~~~A~d~~~FL~~wf~kfPey~~~~fyI~GESYAG~YVP~La~~I~~~N~~~~ 197 (454)
T KOG1282|consen 118 ANILFLDQPVGVGFSYSNTSSDYKTGDDGTAKDNYEFLQKWFEKFPEYKSNDFYIAGESYAGHYVPALAQEILKGNKKCC 197 (454)
T ss_pred ccEEEEecCCcCCccccCCCCcCcCCcHHHHHHHHHHHHHHHHhChhhcCCCeEEecccccceehHHHHHHHHhcccccc
Confidence 468888988 666664222 1 1233455666666554 44433 34579999999999766666543 2
Q ss_pred -CC--ccEEEEeccCCcc
Q 022960 139 -ND--ISIVINISGRFNL 153 (289)
Q Consensus 139 -p~--v~~~v~~~~~~~~ 153 (289)
|. ++|+++-+|..+.
T Consensus 198 ~~~iNLkG~~IGNg~td~ 215 (454)
T KOG1282|consen 198 KPNINLKGYAIGNGLTDP 215 (454)
T ss_pred CCcccceEEEecCcccCc
Confidence 33 7899988886543
No 191
>PF05576 Peptidase_S37: PS-10 peptidase S37; InterPro: IPR008761 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. These group of serine peptidases belong to MEROPS peptidase family S37 (clan SC). The members of this group of secreted peptidases are restricted to bacteria. In Streptomyces lividans the peptidase removes tripeptides from the N terminus of extracellular proteins (tripeptidyl aminopeptidase,Tap) [, ].
Probab=98.17 E-value=0.0002 Score=57.18 Aligned_cols=105 Identities=19% Similarity=0.151 Sum_probs=82.3
Q ss_pred CCCcEEEEEcCCCCCCCCcchHHHHHHHHHcCccEEEEccccCCCCCCCcc---ccchHHHHHHHHHHHHHHHhcCCceE
Q 022960 43 GSKQLVIVCHGFQSTKDRIPMVNLAAALEREGISAFRFDFSGNGESEGSFL---YGNYRREAEDLRAIVQDFCAKGRVIT 119 (289)
Q Consensus 43 ~~~~~iv~~hG~~~~~~~~~~~~~~~~l~~~G~~v~~~d~~G~G~s~~~~~---~~~~~~~~~d~~~~i~~l~~~~~~~~ 119 (289)
-.+|+|+..-|++..... ........| +-+-+.+++|-++.|...+. ..+.++.+.|...+++.++..-..+.
T Consensus 61 ~drPtV~~T~GY~~~~~p-~r~Ept~Ll---d~NQl~vEhRfF~~SrP~p~DW~~Lti~QAA~D~Hri~~A~K~iY~~kW 136 (448)
T PF05576_consen 61 FDRPTVLYTEGYNVSTSP-RRSEPTQLL---DGNQLSVEHRFFGPSRPEPADWSYLTIWQAASDQHRIVQAFKPIYPGKW 136 (448)
T ss_pred CCCCeEEEecCcccccCc-cccchhHhh---ccceEEEEEeeccCCCCCCCCcccccHhHhhHHHHHHHHHHHhhccCCc
Confidence 378999999998876542 223344333 24778999999999986553 45678889999999999988866789
Q ss_pred EEEEeChhHHHHHHHHHhCCC-ccEEEEeccCC
Q 022960 120 AIIGHSKGGNAVLLYASKYND-ISIVINISGRF 151 (289)
Q Consensus 120 ~l~G~S~Gg~~a~~~a~~~p~-v~~~v~~~~~~ 151 (289)
+--|-|=||+.++.+=.-+|+ |++.|.-..+.
T Consensus 137 ISTG~SKGGmTa~y~rrFyP~DVD~tVaYVAP~ 169 (448)
T PF05576_consen 137 ISTGGSKGGMTAVYYRRFYPDDVDGTVAYVAPN 169 (448)
T ss_pred eecCcCCCceeEEEEeeeCCCCCCeeeeeeccc
Confidence 999999999999988888899 99988765544
No 192
>KOG3967 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.95 E-value=0.00041 Score=50.13 Aligned_cols=105 Identities=13% Similarity=0.166 Sum_probs=62.7
Q ss_pred CCcEEEEEcCCCCCCCCcch---------------HHHHHHHHHcCccEEEEcccc---CCCCCCCccccchHHHHHHHH
Q 022960 44 SKQLVIVCHGFQSTKDRIPM---------------VNLAAALEREGISAFRFDFSG---NGESEGSFLYGNYRREAEDLR 105 (289)
Q Consensus 44 ~~~~iv~~hG~~~~~~~~~~---------------~~~~~~l~~~G~~v~~~d~~G---~G~s~~~~~~~~~~~~~~d~~ 105 (289)
++..+|+|||.|..... .| -++++.-.+.||.|++.+.-- +-++...+..+ ...-++-+.
T Consensus 100 ~~kLlVLIHGSGvVrAG-QWARrLIIN~~Ld~GTQiPyi~rAv~~Gygviv~N~N~~~kfye~k~np~ky-irt~veh~~ 177 (297)
T KOG3967|consen 100 PQKLLVLIHGSGVVRAG-QWARRLIINEDLDSGTQIPYIKRAVAEGYGVIVLNPNRERKFYEKKRNPQKY-IRTPVEHAK 177 (297)
T ss_pred ccceEEEEecCceEecc-hHhhhhhhccccccCCcChHHHHHHHcCCcEEEeCCchhhhhhhcccCcchh-ccchHHHHH
Confidence 56689999998865432 12 224455556699999987541 11111111110 011122223
Q ss_pred HHHHHHHhc-CCceEEEEEeChhHHHHHHHHHhCCC---ccEEEEeccC
Q 022960 106 AIVQDFCAK-GRVITAIIGHSKGGNAVLLYASKYND---ISIVINISGR 150 (289)
Q Consensus 106 ~~i~~l~~~-~~~~~~l~G~S~Gg~~a~~~a~~~p~---v~~~v~~~~~ 150 (289)
.+-..+... ..+.+.++.||+||...+.+..+.|+ |.++.+-+++
T Consensus 178 yvw~~~v~pa~~~sv~vvahsyGG~~t~~l~~~f~~d~~v~aialTDs~ 226 (297)
T KOG3967|consen 178 YVWKNIVLPAKAESVFVVAHSYGGSLTLDLVERFPDDESVFAIALTDSA 226 (297)
T ss_pred HHHHHHhcccCcceEEEEEeccCChhHHHHHHhcCCccceEEEEeeccc
Confidence 332332222 66789999999999999999999987 6677666654
No 193
>PF07082 DUF1350: Protein of unknown function (DUF1350); InterPro: IPR010765 This family consists of several hypothetical proteins from both cyanobacteria and plants. Members of this family are typically around 250 residues in length. The function of this family is unknown but the species distribution indicates that the family may be involved in photosynthesis.
Probab=97.90 E-value=0.0003 Score=52.51 Aligned_cols=102 Identities=20% Similarity=0.163 Sum_probs=63.1
Q ss_pred ecCCCcEEEEEcCCCCC-CCCcchHHHHHHHHHcCccEEEEccccCCCCCCCccccch-HHHHHHHHHHHHHHHhc-C--
Q 022960 41 ETGSKQLVIVCHGFQST-KDRIPMVNLAAALEREGISAFRFDFSGNGESEGSFLYGNY-RREAEDLRAIVQDFCAK-G-- 115 (289)
Q Consensus 41 ~~~~~~~iv~~hG~~~~-~~~~~~~~~~~~l~~~G~~v~~~d~~G~G~s~~~~~~~~~-~~~~~d~~~~i~~l~~~-~-- 115 (289)
++.+..+|=|+-|..-. .-.-.|+.+.+.|+++||.|++.-+.- .++.... .+..+.....++.+... +
T Consensus 13 P~~P~gvihFiGGaf~ga~P~itYr~lLe~La~~Gy~ViAtPy~~------tfDH~~~A~~~~~~f~~~~~~L~~~~~~~ 86 (250)
T PF07082_consen 13 PPRPKGVIHFIGGAFVGAAPQITYRYLLERLADRGYAVIATPYVV------TFDHQAIAREVWERFERCLRALQKRGGLD 86 (250)
T ss_pred CCCCCEEEEEcCcceeccCcHHHHHHHHHHHHhCCcEEEEEecCC------CCcHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 44455566677774322 222358999999999999999987641 1111111 12223444455555443 1
Q ss_pred --CceEEEEEeChhHHHHHHHHHhCCC-ccEEEEec
Q 022960 116 --RVITAIIGHSKGGNAVLLYASKYND-ISIVINIS 148 (289)
Q Consensus 116 --~~~~~l~G~S~Gg~~a~~~a~~~p~-v~~~v~~~ 148 (289)
.-+++-+|||+|+-+-+.+...++. -++-++++
T Consensus 87 ~~~lP~~~vGHSlGcklhlLi~s~~~~~r~gniliS 122 (250)
T PF07082_consen 87 PAYLPVYGVGHSLGCKLHLLIGSLFDVERAGNILIS 122 (250)
T ss_pred cccCCeeeeecccchHHHHHHhhhccCcccceEEEe
Confidence 1367889999999998887777654 56666665
No 194
>PLN02517 phosphatidylcholine-sterol O-acyltransferase
Probab=97.85 E-value=6.4e-05 Score=63.01 Aligned_cols=90 Identities=20% Similarity=0.139 Sum_probs=60.8
Q ss_pred cchHHHHHHHHHcCccEEEEccccCCCCCCCc--cccchHHHHHHHHHHHHHHHhc-CCceEEEEEeChhHHHHHHHHHh
Q 022960 61 IPMVNLAAALEREGISAFRFDFSGNGESEGSF--LYGNYRREAEDLRAIVQDFCAK-GRVITAIIGHSKGGNAVLLYASK 137 (289)
Q Consensus 61 ~~~~~~~~~l~~~G~~v~~~d~~G~G~s~~~~--~~~~~~~~~~d~~~~i~~l~~~-~~~~~~l~G~S~Gg~~a~~~a~~ 137 (289)
+.|..+++.|++.||. -.++.|...--+.. .....+.+...+..+|+.+... +.++++|+||||||.+++.+...
T Consensus 156 ~vw~kLIe~L~~iGY~--~~nL~gAPYDWRls~~~le~rd~YF~rLK~lIE~ay~~nggkKVVLV~HSMGglv~lyFL~w 233 (642)
T PLN02517 156 FVWAVLIANLARIGYE--EKNMYMAAYDWRLSFQNTEVRDQTLSRLKSNIELMVATNGGKKVVVVPHSMGVLYFLHFMKW 233 (642)
T ss_pred eeHHHHHHHHHHcCCC--CCceeecccccccCccchhhhhHHHHHHHHHHHHHHHHcCCCeEEEEEeCCchHHHHHHHHh
Confidence 4579999999999997 34444332211111 0112245557788888877555 46799999999999999998763
Q ss_pred C-----------C----C-ccEEEEeccCCc
Q 022960 138 Y-----------N----D-ISIVINISGRFN 152 (289)
Q Consensus 138 ~-----------p----~-v~~~v~~~~~~~ 152 (289)
. + + |++.|.+++++.
T Consensus 234 v~~~~~~gG~gG~~W~dKyI~s~I~Iagp~l 264 (642)
T PLN02517 234 VEAPAPMGGGGGPGWCAKHIKAVMNIGGPFL 264 (642)
T ss_pred ccccccccCCcchHHHHHHHHHheecccccC
Confidence 2 1 1 789999988653
No 195
>COG4553 DepA Poly-beta-hydroxyalkanoate depolymerase [Lipid metabolism]
Probab=97.84 E-value=0.0014 Score=49.97 Aligned_cols=105 Identities=8% Similarity=0.001 Sum_probs=71.3
Q ss_pred CCcEEEEEcCCCCCCCCcchHHHHHHHHHcCccEEEEccccCCCCCCCccccchHHHHHHHHHHHHHHHhcCCceEEEEE
Q 022960 44 SKQLVIVCHGFQSTKDRIPMVNLAAALEREGISAFRFDFSGNGESEGSFLYGNYRREAEDLRAIVQDFCAKGRVITAIIG 123 (289)
Q Consensus 44 ~~~~iv~~hG~~~~~~~~~~~~~~~~l~~~G~~v~~~d~~G~G~s~~~~~~~~~~~~~~d~~~~i~~l~~~~~~~~~l~G 123 (289)
..|.|+++-...|+... ..+.-.+.|... ..|+..|+-..-.-+-.....++++.++.+.+.+..+ +.+ +++++
T Consensus 102 pdPkvLivapmsGH~aT-LLR~TV~alLp~-~~vyitDW~dAr~Vp~~~G~FdldDYIdyvie~~~~~---Gp~-~hv~a 175 (415)
T COG4553 102 PDPKVLIVAPMSGHYAT-LLRGTVEALLPY-HDVYITDWVDARMVPLEAGHFDLDDYIDYVIEMINFL---GPD-AHVMA 175 (415)
T ss_pred CCCeEEEEecccccHHH-HHHHHHHHhccc-cceeEeeccccceeecccCCccHHHHHHHHHHHHHHh---CCC-CcEEE
Confidence 45678888888877654 456666666665 6788888875444333445567788888888888888 554 78888
Q ss_pred eChhHH-----HHHHHHHhCCC-ccEEEEeccCCccc
Q 022960 124 HSKGGN-----AVLLYASKYND-ISIVINISGRFNLK 154 (289)
Q Consensus 124 ~S~Gg~-----~a~~~a~~~p~-v~~~v~~~~~~~~~ 154 (289)
.|.=+. +++..+...|. ...+++++++.+..
T Consensus 176 VCQP~vPvLAAisLM~~~~~p~~PssMtlmGgPIDaR 212 (415)
T COG4553 176 VCQPTVPVLAAISLMEEDGDPNVPSSMTLMGGPIDAR 212 (415)
T ss_pred EecCCchHHHHHHHHHhcCCCCCCceeeeecCccccc
Confidence 887653 33333333465 78999999887653
No 196
>KOG2182 consensus Hydrolytic enzymes of the alpha/beta hydrolase fold [Posttranslational modification, protein turnover, chaperones; General function prediction only]
Probab=97.60 E-value=0.0011 Score=54.23 Aligned_cols=110 Identities=15% Similarity=0.143 Sum_probs=79.1
Q ss_pred CCCcEEEEEcCCCCCCCCcc---hHHHHHHHHHcCccEEEEccccCCCCCCCc-------cccchHHHHHHHHHHHHHHH
Q 022960 43 GSKQLVIVCHGFQSTKDRIP---MVNLAAALEREGISAFRFDFSGNGESEGSF-------LYGNYRREAEDLRAIVQDFC 112 (289)
Q Consensus 43 ~~~~~iv~~hG~~~~~~~~~---~~~~~~~l~~~G~~v~~~d~~G~G~s~~~~-------~~~~~~~~~~d~~~~i~~l~ 112 (289)
..+|..++|-|=+.....|. -..+...-.+.|-.|+.++.|-+|.|.+.. ...+..+...|+.++|+.+.
T Consensus 84 ~~gPiFLmIGGEgp~~~~wv~~~~~~~~~~AkkfgA~v~~lEHRFYG~S~P~~~~st~nlk~LSs~QALaDla~fI~~~n 163 (514)
T KOG2182|consen 84 PGGPIFLMIGGEGPESDKWVGNENLTWLQWAKKFGATVFQLEHRFYGQSSPIGDLSTSNLKYLSSLQALADLAEFIKAMN 163 (514)
T ss_pred CCCceEEEEcCCCCCCCCccccCcchHHHHHHHhCCeeEEeeeeccccCCCCCCCcccchhhhhHHHHHHHHHHHHHHHH
Confidence 46788888888665443320 112223333448899999999999885422 12344677899999999886
Q ss_pred hc----CCceEEEEEeChhHHHHHHHHHhCCC-ccEEEEeccCCc
Q 022960 113 AK----GRVITAIIGHSKGGNAVLLYASKYND-ISIVINISGRFN 152 (289)
Q Consensus 113 ~~----~~~~~~l~G~S~Gg~~a~~~a~~~p~-v~~~v~~~~~~~ 152 (289)
.+ +..+++.+|-|+-|.++..+=..+|+ +.+.|.-++++.
T Consensus 164 ~k~n~~~~~~WitFGgSYsGsLsAW~R~~yPel~~GsvASSapv~ 208 (514)
T KOG2182|consen 164 AKFNFSDDSKWITFGGSYSGSLSAWFREKYPELTVGSVASSAPVL 208 (514)
T ss_pred hhcCCCCCCCeEEECCCchhHHHHHHHHhCchhheeeccccccee
Confidence 66 23489999999999999999999999 888887776653
No 197
>PF06259 Abhydrolase_8: Alpha/beta hydrolase; InterPro: IPR010427 This is a family of uncharacterised proteins found in Actinobacteria. Computational analysis suggests that they may belong to the alpha-beta hydrolase family of enzymes, as they are predicted to form the core secondary structures and catalytic machinery common to these proteins []. Genomic context suggests that they may function as lipases, controlling the concentration of their putative phospholipid substrates.
Probab=97.55 E-value=0.0076 Score=43.29 Aligned_cols=107 Identities=21% Similarity=0.197 Sum_probs=64.3
Q ss_pred CCcEEEEEcCCCCCCCCcch--H----HHHHHHH----H--cCccEEEEccccCCCCC-CC---ccccchHHHHHHHHHH
Q 022960 44 SKQLVIVCHGFQSTKDRIPM--V----NLAAALE----R--EGISAFRFDFSGNGESE-GS---FLYGNYRREAEDLRAI 107 (289)
Q Consensus 44 ~~~~iv~~hG~~~~~~~~~~--~----~~~~~l~----~--~G~~v~~~d~~G~G~s~-~~---~~~~~~~~~~~d~~~~ 107 (289)
...+.++++|.+.+...... . .+.+.+. . .+-.+-++-+.||-... .. .....-..-+.++..+
T Consensus 18 A~~Vav~VPG~~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~vAvV~WlgYdaP~~~~~~a~~~~~A~~ga~~L~~f 97 (177)
T PF06259_consen 18 ADHVAVLVPGTGTTLDSFLGGMDDEARALRAAAARAARAAGPGGSVAVVAWLGYDAPAGGLPDAASPGYARAGAPRLARF 97 (177)
T ss_pred cCeeEEEcCCCCCCcccccchhHHHHHHHHHHHHHHHHhhcCCCCeEEEEEcCCCCCCCccccccCchHHHHHHHHHHHH
Confidence 56688999998877653111 1 1222111 1 12345555555553331 11 1111124446778888
Q ss_pred HHHHHhc--CCceEEEEEeChhHHHHHHHHHhCCC-ccEEEEeccC
Q 022960 108 VQDFCAK--GRVITAIIGHSKGGNAVLLYASKYND-ISIVINISGR 150 (289)
Q Consensus 108 i~~l~~~--~~~~~~l~G~S~Gg~~a~~~a~~~p~-v~~~v~~~~~ 150 (289)
++.|+.. ...++.++|||+|+.++-..+...+. +..+|+++++
T Consensus 98 ~~gl~a~~~~~~~~tv~GHSYGS~v~G~A~~~~~~~vddvv~~GSP 143 (177)
T PF06259_consen 98 LDGLRATHGPDAHLTVVGHSYGSTVVGLAAQQGGLRVDDVVLVGSP 143 (177)
T ss_pred HHHhhhhcCCCCCEEEEEecchhHHHHHHhhhCCCCcccEEEECCC
Confidence 8887665 34579999999999999987777444 8888888653
No 198
>cd00741 Lipase Lipase. Lipases are esterases that can hydrolyze long-chain acyl-triglycerides into di- and monoglycerides, glycerol, and free fatty acids at a water/lipid interface. A typical feature of lipases is "interfacial activation", the process of becoming active at the lipid/water interface, although several examples of lipases have been identified that do not undergo interfacial activation . The active site of a lipase contains a catalytic triad consisting of Ser - His - Asp/Glu, but unlike most serine proteases, the active site is buried inside the structure. A "lid" or "flap" covers the active site, making it inaccessible to solvent and substrates. The lid opens during the process of interfacial activation, allowing the lipid substrate access to the active site.
Probab=97.48 E-value=0.00054 Score=48.43 Aligned_cols=53 Identities=17% Similarity=0.115 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHHHhc-CCceEEEEEeChhHHHHHHHHHhCC-----CccEEEEeccCC
Q 022960 99 REAEDLRAIVQDFCAK-GRVITAIIGHSKGGNAVLLYASKYN-----DISIVINISGRF 151 (289)
Q Consensus 99 ~~~~d~~~~i~~l~~~-~~~~~~l~G~S~Gg~~a~~~a~~~p-----~v~~~v~~~~~~ 151 (289)
.....+...++..... ...+++++|||+||.+|..++.... .+..++.++++.
T Consensus 9 ~~~~~i~~~~~~~~~~~p~~~i~v~GHSlGg~lA~l~a~~~~~~~~~~~~~~~~fg~p~ 67 (153)
T cd00741 9 SLANLVLPLLKSALAQYPDYKIHVTGHSLGGALAGLAGLDLRGRGLGRLVRVYTFGPPR 67 (153)
T ss_pred HHHHHHHHHHHHHHHHCCCCeEEEEEcCHHHHHHHHHHHHHHhccCCCceEEEEeCCCc
Confidence 3445555556555432 4568999999999999999887763 255566666543
No 199
>PF04083 Abhydro_lipase: Partial alpha/beta-hydrolase lipase region; InterPro: IPR006693 The alpha/beta hydrolase fold is common to several hydrolytic enzymes of widely differing phylogenetic origin and catalytic function. The core of each enzyme is similar: an alpha/beta sheet, not barrel, of eight beta-sheets connected by alpha-helices []. This entry represents the N-terminal part of an alpha/beta hydrolase domain found in a number of lipases.; GO: 0006629 lipid metabolic process; PDB: 1K8Q_B 1HLG_B.
Probab=97.43 E-value=0.00038 Score=40.42 Aligned_cols=44 Identities=18% Similarity=0.139 Sum_probs=26.2
Q ss_pred cccceeeEEeeCCCCceEEEEEeecC--------CCcEEEEEcCCCCCCCCc
Q 022960 18 PVVQRRRVVIPNSHGEKLVGILHETG--------SKQLVIVCHGFQSTKDRI 61 (289)
Q Consensus 18 ~~~~~~~~~~~~~~g~~l~~~~~~~~--------~~~~iv~~hG~~~~~~~~ 61 (289)
.+.+.++..+.+.||..|..+..+.+ ++|+|++.||+.+++..|
T Consensus 8 ~GY~~E~h~V~T~DGYiL~l~RIp~~~~~~~~~~~k~pVll~HGL~~ss~~w 59 (63)
T PF04083_consen 8 HGYPCEEHEVTTEDGYILTLHRIPPGKNSSNQNKKKPPVLLQHGLLQSSDDW 59 (63)
T ss_dssp TT---EEEEEE-TTSEEEEEEEE-SBTTCTTTTTT--EEEEE--TT--GGGG
T ss_pred cCCCcEEEEEEeCCCcEEEEEEccCCCCCcccCCCCCcEEEECCcccChHHH
Confidence 35677899999999998887655433 488999999999998763
No 200
>KOG1516 consensus Carboxylesterase and related proteins [General function prediction only]
Probab=97.42 E-value=0.00046 Score=59.67 Aligned_cols=103 Identities=15% Similarity=0.098 Sum_probs=63.5
Q ss_pred CcEEEEEcCCCCCCCCc-ch--HHHHHHHHHcCccEEEEccc----cCCCCCC--CccccchHHHHHHHHHHHHHHHhc-
Q 022960 45 KQLVIVCHGFQSTKDRI-PM--VNLAAALEREGISAFRFDFS----GNGESEG--SFLYGNYRREAEDLRAIVQDFCAK- 114 (289)
Q Consensus 45 ~~~iv~~hG~~~~~~~~-~~--~~~~~~l~~~G~~v~~~d~~----G~G~s~~--~~~~~~~~~~~~d~~~~i~~l~~~- 114 (289)
-|++|++||++....+. .+ ......+..+...|+.+.+| |+..... ...... ..|...+++|++++
T Consensus 112 ~pV~V~iHGG~~~~gs~~~~~~~~~~~~~~~~~VVvVt~~YRLG~lGF~st~d~~~~gN~g----l~Dq~~AL~wv~~~I 187 (545)
T KOG1516|consen 112 LPVMVYIHGGGFQFGSASSFEIISPAYVLLLKDVVVVTINYRLGPLGFLSTGDSAAPGNLG----LFDQLLALRWVKDNI 187 (545)
T ss_pred CCEEEEEeCCceeeccccchhhcCchhccccCCEEEEEecccceeceeeecCCCCCCCccc----HHHHHHHHHHHHHHH
Confidence 59999999987543321 11 12222333335778888888 3322221 112222 24777777777666
Q ss_pred -----CCceEEEEEeChhHHHHHHHHHhCC--C-ccEEEEeccCC
Q 022960 115 -----GRVITAIIGHSKGGNAVLLYASKYN--D-ISIVINISGRF 151 (289)
Q Consensus 115 -----~~~~~~l~G~S~Gg~~a~~~a~~~p--~-v~~~v~~~~~~ 151 (289)
+.++|.|+|||.||..+..++..-. . +..+|..++..
T Consensus 188 ~~FGGdp~~vTl~G~saGa~~v~~l~~Sp~s~~LF~~aI~~SG~~ 232 (545)
T KOG1516|consen 188 PSFGGDPKNVTLFGHSAGAASVSLLTLSPHSRGLFHKAISMSGNA 232 (545)
T ss_pred HhcCCCCCeEEEEeechhHHHHHHHhcCHhhHHHHHHHHhhcccc
Confidence 6779999999999999887665321 2 66677776653
No 201
>COG4947 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.41 E-value=0.002 Score=45.02 Aligned_cols=55 Identities=22% Similarity=0.216 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHHHhc-CCceEEEEEeChhHHHHHHHHHhCCC-ccEEEEeccCCccc
Q 022960 100 EAEDLRAIVQDFCAK-GRVITAIIGHSKGGNAVLLYASKYND-ISIVINISGRFNLK 154 (289)
Q Consensus 100 ~~~d~~~~i~~l~~~-~~~~~~l~G~S~Gg~~a~~~a~~~p~-v~~~v~~~~~~~~~ 154 (289)
.++.-.+.-.++.+. =+.+.++-|-||||+.|+.+.-++|+ +.++|.+++.++..
T Consensus 83 r~~rH~AyerYv~eEalpgs~~~sgcsmGayhA~nfvfrhP~lftkvialSGvYdar 139 (227)
T COG4947 83 RAERHRAYERYVIEEALPGSTIVSGCSMGAYHAANFVFRHPHLFTKVIALSGVYDAR 139 (227)
T ss_pred HHHHHHHHHHHHHHhhcCCCccccccchhhhhhhhhheeChhHhhhheeecceeeHH
Confidence 344444444555444 23457889999999999999999999 89999999988754
No 202
>PF01764 Lipase_3: Lipase (class 3); InterPro: IPR002921 Triglyceride lipases are lipolytic enzymes that hydrolyse ester linkages of triglycerides []. Lipases are widely distributed in animals, plants and prokaryotes. This family of lipases have been called Class 3 as they are not closely related to other lipase families.; GO: 0004806 triglyceride lipase activity, 0006629 lipid metabolic process; PDB: 1LGY_A 1DTE_A 1DT5_F 4DYH_B 1DU4_C 4EA6_B 1GT6_B 1EIN_A 1DT3_A 1TIB_A ....
Probab=97.24 E-value=0.0011 Score=45.97 Aligned_cols=37 Identities=24% Similarity=0.367 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHhc-CCceEEEEEeChhHHHHHHHHHhC
Q 022960 102 EDLRAIVQDFCAK-GRVITAIIGHSKGGNAVLLYASKY 138 (289)
Q Consensus 102 ~d~~~~i~~l~~~-~~~~~~l~G~S~Gg~~a~~~a~~~ 138 (289)
+.+.+.++.+.++ ...++++.|||+||.+|..++...
T Consensus 48 ~~~~~~l~~~~~~~~~~~i~itGHSLGGalA~l~a~~l 85 (140)
T PF01764_consen 48 DQILDALKELVEKYPDYSIVITGHSLGGALASLAAADL 85 (140)
T ss_dssp HHHHHHHHHHHHHSTTSEEEEEEETHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccCccchhhccchHHHHHHHHHHhh
Confidence 3444444444433 446899999999999999888763
No 203
>PF11187 DUF2974: Protein of unknown function (DUF2974); InterPro: IPR024499 This family of proteins has no known function.
Probab=97.14 E-value=0.0017 Score=48.70 Aligned_cols=46 Identities=33% Similarity=0.383 Sum_probs=32.4
Q ss_pred HHHHHHHHhcCCceEEEEEeChhHHHHHHHHHhCC----C-ccEEEEeccC
Q 022960 105 RAIVQDFCAKGRVITAIIGHSKGGNAVLLYASKYN----D-ISIVINISGR 150 (289)
Q Consensus 105 ~~~i~~l~~~~~~~~~l~G~S~Gg~~a~~~a~~~p----~-v~~~v~~~~~ 150 (289)
.+.++.+.+....++.+.|||.||.+|..++...+ + |..++..+++
T Consensus 72 ~~yl~~~~~~~~~~i~v~GHSkGGnLA~yaa~~~~~~~~~rI~~vy~fDgP 122 (224)
T PF11187_consen 72 LAYLKKIAKKYPGKIYVTGHSKGGNLAQYAAANCDDEIQDRISKVYSFDGP 122 (224)
T ss_pred HHHHHHHHHhCCCCEEEEEechhhHHHHHHHHHccHHHhhheeEEEEeeCC
Confidence 33444443333446999999999999999888743 2 7788877764
No 204
>KOG2369 consensus Lecithin:cholesterol acyltransferase (LCAT)/Acyl-ceramide synthase [Lipid transport and metabolism]
Probab=97.11 E-value=0.0015 Score=53.27 Aligned_cols=85 Identities=19% Similarity=0.188 Sum_probs=57.7
Q ss_pred cchHHHHHHHHHcCcc------EEEEccccCCCCCCCccccchHHHHHHHHHHHHHHHhc-CCceEEEEEeChhHHHHHH
Q 022960 61 IPMVNLAAALEREGIS------AFRFDFSGNGESEGSFLYGNYRREAEDLRAIVQDFCAK-GRVITAIIGHSKGGNAVLL 133 (289)
Q Consensus 61 ~~~~~~~~~l~~~G~~------v~~~d~~G~G~s~~~~~~~~~~~~~~d~~~~i~~l~~~-~~~~~~l~G~S~Gg~~a~~ 133 (289)
++|..+++.|..-||. -..+|+|=.-. .....++....+...|+...+. +.++++||+|||||.+.+.
T Consensus 124 ~~w~~~i~~lv~~GYe~~~~l~ga~YDwRls~~-----~~e~rd~yl~kLK~~iE~~~~~~G~kkVvlisHSMG~l~~ly 198 (473)
T KOG2369|consen 124 WYWHELIENLVGIGYERGKTLFGAPYDWRLSYH-----NSEERDQYLSKLKKKIETMYKLNGGKKVVLISHSMGGLYVLY 198 (473)
T ss_pred HHHHHHHHHHHhhCcccCceeeccccchhhccC-----ChhHHHHHHHHHHHHHHHHHHHcCCCceEEEecCCccHHHHH
Confidence 4788999999988887 34467772110 1112244456667777666544 5589999999999999999
Q ss_pred HHHhCCC---------ccEEEEeccC
Q 022960 134 YASKYND---------ISIVINISGR 150 (289)
Q Consensus 134 ~a~~~p~---------v~~~v~~~~~ 150 (289)
+....+. +++++.++++
T Consensus 199 Fl~w~~~~~~~W~~k~I~sfvnig~p 224 (473)
T KOG2369|consen 199 FLKWVEAEGPAWCDKYIKSFVNIGAP 224 (473)
T ss_pred HHhcccccchhHHHHHHHHHHccCch
Confidence 9887754 4566666543
No 205
>KOG4388 consensus Hormone-sensitive lipase HSL [Lipid transport and metabolism]
Probab=97.09 E-value=0.0053 Score=51.46 Aligned_cols=100 Identities=16% Similarity=0.116 Sum_probs=63.1
Q ss_pred CCcEEEEEcCCCCCCCC-cchHHHHHHHHHc-CccEEEEccccCCCCCCCccccchHHHHHHHHHHHHHHHhc------C
Q 022960 44 SKQLVIVCHGFQSTKDR-IPMVNLAAALERE-GISAFRFDFSGNGESEGSFLYGNYRREAEDLRAIVQDFCAK------G 115 (289)
Q Consensus 44 ~~~~iv~~hG~~~~~~~-~~~~~~~~~l~~~-G~~v~~~d~~G~G~s~~~~~~~~~~~~~~d~~~~i~~l~~~------~ 115 (289)
++-.|+-+||+|....+ .......+.+++. |..|+.+||-=. ....|....+.+.-+.-|+.++ -
T Consensus 395 S~sli~HcHGGGfVAqsSkSHE~YLr~Wa~aL~cPiiSVdYSLA-------PEaPFPRaleEv~fAYcW~inn~allG~T 467 (880)
T KOG4388|consen 395 SRSLIVHCHGGGFVAQSSKSHEPYLRSWAQALGCPIISVDYSLA-------PEAPFPRALEEVFFAYCWAINNCALLGST 467 (880)
T ss_pred CceEEEEecCCceeeeccccccHHHHHHHHHhCCCeEEeeeccC-------CCCCCCcHHHHHHHHHHHHhcCHHHhCcc
Confidence 55588899999854322 1123333444433 899999998622 2223344456666666666555 3
Q ss_pred CceEEEEEeChhHHHHHHHHHh----CCC-ccEEEEeccC
Q 022960 116 RVITAIIGHSKGGNAVLLYASK----YND-ISIVINISGR 150 (289)
Q Consensus 116 ~~~~~l~G~S~Gg~~a~~~a~~----~p~-v~~~v~~~~~ 150 (289)
.++|+++|.|.||.+.+.++.+ .=+ .+++++..++
T Consensus 468 gEriv~aGDSAGgNL~~~VaLr~i~~gvRvPDGl~laY~p 507 (880)
T KOG4388|consen 468 GERIVLAGDSAGGNLCFTVALRAIAYGVRVPDGLMLAYPP 507 (880)
T ss_pred cceEEEeccCCCcceeehhHHHHHHhCCCCCCceEEecCh
Confidence 5799999999999876655544 223 5788877654
No 206
>COG2819 Predicted hydrolase of the alpha/beta superfamily [General function prediction only]
Probab=97.07 E-value=0.00096 Score=50.49 Aligned_cols=39 Identities=38% Similarity=0.322 Sum_probs=34.4
Q ss_pred CCceEEEEEeChhHHHHHHHHHhCCC-ccEEEEeccCCcc
Q 022960 115 GRVITAIIGHSKGGNAVLLYASKYND-ISIVINISGRFNL 153 (289)
Q Consensus 115 ~~~~~~l~G~S~Gg~~a~~~a~~~p~-v~~~v~~~~~~~~ 153 (289)
+.++..++|||+||.+++.....+|+ +...++++|.+-+
T Consensus 135 ~~~~~~i~GhSlGGLfvl~aLL~~p~~F~~y~~~SPSlWw 174 (264)
T COG2819 135 NSERTAIIGHSLGGLFVLFALLTYPDCFGRYGLISPSLWW 174 (264)
T ss_pred CcccceeeeecchhHHHHHHHhcCcchhceeeeecchhhh
Confidence 55678999999999999999999999 9999999986544
No 207
>PF01083 Cutinase: Cutinase; InterPro: IPR000675 Aerial plant organs are protected by a cuticle composed of an insoluble polymeric structural compound, cutin, which is a polyester composed of hydroxy and hydroxyepoxy fatty acids []. Plant pathogenic fungi produce extracellular degradative enzymes [] that play an important role in pathogenesis. They include cutinase, which hydrolyses cutin, facilitating fungus penetration through the cuticle. Inhibition of the enzyme can prevent fungal infection through intact cuticles. Cutin monomers released from the cuticle by small amounts of cutinase on fungal spore surfaces can greatly increase the amount of cutinase secreted by the spore, the mechanism for which process is as yet unknown [, ]. Cutinase is a serine esterase containing the classical Ser, His, Asp triad of serine hydrolases []. The protein belongs to the alpha-beta class, with a central beta-sheet of 5 parallel strands covered by 5 helices on either side of the sheet. The active site cleft is partly covered by 2 thin bridges formed by amino acid side chains, by contrast with the hydrophobic lid possessed by other lipases []. The protein also contains 2 disulphide bridges, which are essential for activity, their cleavage resulting in complete loss of enzymatic activity []. Two cutinase-like proteins (MtCY39.35 and MtCY339.08c) have been found in the genome of the bacteria Mycobacterium tuberculosis.; GO: 0016787 hydrolase activity, 0008152 metabolic process; PDB: 1XZK_A 1XZA_A 1CUD_C 1XZI_A 1XZH_A 1CUF_A 1FFD_A 2CUT_A 1FFA_A 1CUA_A ....
Probab=97.06 E-value=0.02 Score=41.51 Aligned_cols=103 Identities=17% Similarity=0.172 Sum_probs=54.5
Q ss_pred EEEEEcCCCCCCCC-cchHHHHHHHHHc-C---ccEEEEccccCCCCCCCccccchHHHHHHHHHHHHHHHhc-CCceEE
Q 022960 47 LVIVCHGFQSTKDR-IPMVNLAAALERE-G---ISAFRFDFSGNGESEGSFLYGNYRREAEDLRAIVQDFCAK-GRVITA 120 (289)
Q Consensus 47 ~iv~~hG~~~~~~~-~~~~~~~~~l~~~-G---~~v~~~d~~G~G~s~~~~~~~~~~~~~~d~~~~i~~l~~~-~~~~~~ 120 (289)
-||+..|.+..... ..-..+.+.|.+. | ..+..++||-..... ....+...-+.++...++..... ...+++
T Consensus 7 ~vi~aRGT~E~~g~~~~g~~~~~~l~~~~g~~~~~~~~V~YpA~~~~~--~y~~S~~~G~~~~~~~i~~~~~~CP~~kiv 84 (179)
T PF01083_consen 7 HVIFARGTGEPPGVGRVGPPFADALQAQPGGTSVAVQGVEYPASLGPN--SYGDSVAAGVANLVRLIEEYAARCPNTKIV 84 (179)
T ss_dssp EEEEE--TTSSTTTCCCHHHHHHHHHHHCTTCEEEEEE--S---SCGG--SCHHHHHHHHHHHHHHHHHHHHHSTTSEEE
T ss_pred EEEEecCCCCCCCCccccHHHHHHHHhhcCCCeeEEEecCCCCCCCcc--cccccHHHHHHHHHHHHHHHHHhCCCCCEE
Confidence 35555565543321 1233455555543 3 445556676322111 11123334456666666655444 456899
Q ss_pred EEEeChhHHHHHHHHHh--CC----C-ccEEEEeccCC
Q 022960 121 IIGHSKGGNAVLLYASK--YN----D-ISIVINISGRF 151 (289)
Q Consensus 121 l~G~S~Gg~~a~~~a~~--~p----~-v~~~v~~~~~~ 151 (289)
|+|+|.|+.++..++.. .+ + |.++++++-+.
T Consensus 85 l~GYSQGA~V~~~~~~~~~l~~~~~~~I~avvlfGdP~ 122 (179)
T PF01083_consen 85 LAGYSQGAMVVGDALSGDGLPPDVADRIAAVVLFGDPR 122 (179)
T ss_dssp EEEETHHHHHHHHHHHHTTSSHHHHHHEEEEEEES-TT
T ss_pred EEecccccHHHHHHHHhccCChhhhhhEEEEEEecCCc
Confidence 99999999999998877 22 2 78888886543
No 208
>COG4287 PqaA PhoPQ-activated pathogenicity-related protein [General function prediction only]
Probab=97.04 E-value=0.004 Score=49.13 Aligned_cols=132 Identities=11% Similarity=0.114 Sum_probs=75.8
Q ss_pred CCceEEEEEeChhHHHHHHHHHhCCCccEEEEeccC-Ccccccccc---cccchhHhhhhhcCcccccccccccccccCh
Q 022960 115 GRVITAIIGHSKGGNAVLLYASKYNDISIVINISGR-FNLKRGIEG---RLGLGYLQRIKQNGFIDVRNKKGKLEYRVTQ 190 (289)
Q Consensus 115 ~~~~~~l~G~S~Gg~~a~~~a~~~p~v~~~v~~~~~-~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (289)
.++.+++-|-|--|+.++..|...|+|.++|....- ++....+.. ..+..|...+ .... ......+...
T Consensus 232 ~Ik~F~VTGaSKRgWttwLTAIaDprv~aIvp~v~D~Lni~a~L~hiyrsYGgnwpi~l-----~pyy--aegi~erl~t 304 (507)
T COG4287 232 EIKGFMVTGASKRGWTTWLTAIADPRVFAIVPFVYDNLNIEAQLLHIYRSYGGNWPIKL-----APYY--AEGIDERLET 304 (507)
T ss_pred eeeeEEEeccccchHHHHHHHhcCcchhhhhhhHHhhcccHHHHHHHHHhhCCCCCccc-----chhH--hhhHHHhhcC
Confidence 778999999999999999999999998887754321 111111100 0000000000 0000 0000001111
Q ss_pred hhhhhhhc----cchhhhhcccccCceEEEEEeCCCCccChhhHHHHHhhCCC-cEEEEEcCCCcccc
Q 022960 191 ESLMDRLS----TDIHAACHMICQDCRVLTIHGTKDKMVPAEDALEFDKFIPN-HKLHIIEGADHEFT 253 (289)
Q Consensus 191 ~~~~~~~~----~~~~~~~~~~~~~~P~l~i~g~~D~~~~~~~~~~~~~~~~~-~~~~~~~~~gH~~~ 253 (289)
..+.+... ..+....-..++..|-.++.+..|.+.+++.+.-+++.+|+ .-+.++|+..|...
T Consensus 305 p~fkqL~~IiDPlay~~try~~RLalpKyivnaSgDdff~pDsa~lYyd~LPG~kaLrmvPN~~H~~~ 372 (507)
T COG4287 305 PLFKQLLEIIDPLAYRNTRYQLRLALPKYIVNASGDDFFVPDSANLYYDDLPGEKALRMVPNDPHNLI 372 (507)
T ss_pred HHHHHHHHhhcHHHHhhhhhhhhccccceeecccCCcccCCCccceeeccCCCceeeeeCCCCcchhh
Confidence 11111110 00111111224578999999999999999999999999998 56788899999854
No 209
>cd00519 Lipase_3 Lipase (class 3). Lipases are esterases that can hydrolyze long-chain acyl-triglycerides into di- and monoglycerides, glycerol, and free fatty acids at a water/lipid interface. A typical feature of lipases is "interfacial activation," the process of becoming active at the lipid/water interface, although several examples of lipases have been identified that do not undergo interfacial activation . The active site of a lipase contains a catalytic triad consisting of Ser - His - Asp/Glu, but unlike most serine proteases, the active site is buried inside the structure. A "lid" or "flap" covers the active site, making it inaccessible to solvent and substrates. The lid opens during the process of interfacial activation, allowing the lipid substrate access to the active site.
Probab=97.03 E-value=0.0031 Score=47.89 Aligned_cols=39 Identities=18% Similarity=0.157 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHhc-CCceEEEEEeChhHHHHHHHHHh
Q 022960 99 REAEDLRAIVQDFCAK-GRVITAIIGHSKGGNAVLLYASK 137 (289)
Q Consensus 99 ~~~~d~~~~i~~l~~~-~~~~~~l~G~S~Gg~~a~~~a~~ 137 (289)
....++...+..+.++ ...++++.|||+||.+|..++..
T Consensus 109 ~~~~~~~~~~~~~~~~~p~~~i~vtGHSLGGaiA~l~a~~ 148 (229)
T cd00519 109 SLYNQVLPELKSALKQYPDYKIIVTGHSLGGALASLLALD 148 (229)
T ss_pred HHHHHHHHHHHHHHhhCCCceEEEEccCHHHHHHHHHHHH
Confidence 3344555555544443 44589999999999999988775
No 210
>PF11288 DUF3089: Protein of unknown function (DUF3089); InterPro: IPR021440 This family of proteins has no known function.
Probab=97.03 E-value=0.0024 Score=46.86 Aligned_cols=70 Identities=16% Similarity=0.141 Sum_probs=44.8
Q ss_pred HHHHHcCccEEEEccccCCCC-----CCCccccchHHHHHHHHHHHHHHHhc--CCceEEEEEeChhHHHHHHHHHhC
Q 022960 68 AALEREGISAFRFDFSGNGES-----EGSFLYGNYRREAEDLRAIVQDFCAK--GRVITAIIGHSKGGNAVLLYASKY 138 (289)
Q Consensus 68 ~~l~~~G~~v~~~d~~G~G~s-----~~~~~~~~~~~~~~d~~~~i~~l~~~--~~~~~~l~G~S~Gg~~a~~~a~~~ 138 (289)
..+... .+|+++=+|=.... ........++-...|+.++.++..++ +..+++|+|||.|+.+..+++...
T Consensus 40 s~F~~~-~~vfAP~YRQatl~~~~~~~~~~~~~a~~~ay~DV~~AF~~yL~~~n~GRPfILaGHSQGs~~l~~LL~e~ 116 (207)
T PF11288_consen 40 SAFNGV-CNVFAPRYRQATLYAFLDTDREDAEKAFDLAYSDVRAAFDYYLANYNNGRPFILAGHSQGSMHLLRLLKEE 116 (207)
T ss_pred hhhhcC-CccccChhhcchhhhhhccCcchhHHHHHhhHHHHHHHHHHHHHhcCCCCCEEEEEeChHHHHHHHHHHHH
Confidence 334444 57888877732211 11111122233357888888766555 456899999999999999998875
No 211
>COG2939 Carboxypeptidase C (cathepsin A) [Amino acid transport and metabolism]
Probab=96.97 E-value=0.0031 Score=52.01 Aligned_cols=103 Identities=16% Similarity=0.165 Sum_probs=65.7
Q ss_pred CCcEEEEEcCCCCCCCCcchHHHHHH-------------------HHHcCccEEEEccc-cCCCCCC--CccccchHHHH
Q 022960 44 SKQLVIVCHGFQSTKDRIPMVNLAAA-------------------LEREGISAFRFDFS-GNGESEG--SFLYGNYRREA 101 (289)
Q Consensus 44 ~~~~iv~~hG~~~~~~~~~~~~~~~~-------------------l~~~G~~v~~~d~~-G~G~s~~--~~~~~~~~~~~ 101 (289)
++|.|+++.|++|++.. +..+.+. +.+. -.++.+|+| |.|.|.. .....++....
T Consensus 100 ~rPvi~wlNGGPGcSS~--~g~l~elGP~rI~~~~~P~~~~NP~SW~~~-adLvFiDqPvGTGfS~a~~~e~~~d~~~~~ 176 (498)
T COG2939 100 NRPVIFWLNGGPGCSSV--TGLLGELGPKRIQSGTSPSYPDNPGSWLDF-ADLVFIDQPVGTGFSRALGDEKKKDFEGAG 176 (498)
T ss_pred CCceEEEecCCCChHhh--hhhhhhcCCeeeeCCCCCCCCCCccccccC-CceEEEecCcccCcccccccccccchhccc
Confidence 68999999999998742 3333211 1222 368889955 8888873 33444555556
Q ss_pred HHHHHHHHHHHhc------CCceEEEEEeChhHHHHHHHHHhCCC----ccEEEEecc
Q 022960 102 EDLRAIVQDFCAK------GRVITAIIGHSKGGNAVLLYASKYND----ISIVINISG 149 (289)
Q Consensus 102 ~d~~~~i~~l~~~------~~~~~~l~G~S~Gg~~a~~~a~~~p~----v~~~v~~~~ 149 (289)
+|+..+.+.+.+. ...+.+|+|-|+||.-+..+|....+ .++++++.+
T Consensus 177 ~D~~~~~~~f~~~fp~~~r~~~~~~L~GESYgg~yip~~A~~L~~~~~~~~~~~nlss 234 (498)
T COG2939 177 KDVYSFLRLFFDKFPHYARLLSPKFLAGESYGGHYIPVFAHELLEDNIALNGNVNLSS 234 (498)
T ss_pred hhHHHHHHHHHHHHHHHhhhcCceeEeeccccchhhHHHHHHHHHhccccCCceEeee
Confidence 6766666555433 33489999999999888777764321 455555544
No 212
>PLN02454 triacylglycerol lipase
Probab=96.56 E-value=0.0075 Score=49.11 Aligned_cols=38 Identities=21% Similarity=0.264 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHhc-CCc--eEEEEEeChhHHHHHHHHHh
Q 022960 100 EAEDLRAIVQDFCAK-GRV--ITAIIGHSKGGNAVLLYASK 137 (289)
Q Consensus 100 ~~~d~~~~i~~l~~~-~~~--~~~l~G~S~Gg~~a~~~a~~ 137 (289)
..+++...++.+.+. ... +|++.|||+||.+|+..|..
T Consensus 208 ~r~qvl~~V~~l~~~Yp~~~~sI~vTGHSLGGALAtLaA~d 248 (414)
T PLN02454 208 ARSQLLAKIKELLERYKDEKLSIVLTGHSLGASLATLAAFD 248 (414)
T ss_pred HHHHHHHHHHHHHHhCCCCCceEEEEecCHHHHHHHHHHHH
Confidence 445666666666554 222 49999999999999998854
No 213
>KOG2521 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.55 E-value=0.13 Score=41.31 Aligned_cols=224 Identities=13% Similarity=0.101 Sum_probs=115.3
Q ss_pred CCCcEEEEEcCCCCCCCCcchHHHHHHHHHcCccEEEEccccCCCCCCCcc-ccchHHHHHHHHHHHHHHHhcCCceEEE
Q 022960 43 GSKQLVIVCHGFQSTKDRIPMVNLAAALEREGISAFRFDFSGNGESEGSFL-YGNYRREAEDLRAIVQDFCAKGRVITAI 121 (289)
Q Consensus 43 ~~~~~iv~~hG~~~~~~~~~~~~~~~~l~~~G~~v~~~d~~G~G~s~~~~~-~~~~~~~~~d~~~~i~~l~~~~~~~~~l 121 (289)
+...+||++=|+.+..+. ..........+.|+.++.+-.|-+-....... .........-+.+++.... -+..++++
T Consensus 36 ~s~k~Iv~~~gWag~~~r-~l~ky~~~Yq~~g~~~~~~tap~~~~~~~~s~~~~sl~~~~~~l~~L~~~~~-~~~~pi~f 113 (350)
T KOG2521|consen 36 ESEKPIVVLLGWAGAIDR-NLMKYSKIYQDKGYIVVRITAPCPSVFLSASRRILSLSLASTRLSELLSDYN-SDPCPIIF 113 (350)
T ss_pred CccccEEEEeeeccccch-hHHHHHHHHhcCCceEEEecCcccccccccccccchhhHHHHHHHHHhhhcc-CCcCceEE
Confidence 344456666677777664 45667777778899998887775432221111 1121222234444444332 24557888
Q ss_pred EEeChhHHHHHHHH---Hh-C-CC----ccEEEEeccCCcccccccccc------cchhHhhhhhcCccc-----ccccc
Q 022960 122 IGHSKGGNAVLLYA---SK-Y-ND----ISIVINISGRFNLKRGIEGRL------GLGYLQRIKQNGFID-----VRNKK 181 (289)
Q Consensus 122 ~G~S~Gg~~a~~~a---~~-~-p~----v~~~v~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~-----~~~~~ 181 (289)
--+|+||...+... .. . |. ..+++..+.+.........+. .......+.+..+.- .....
T Consensus 114 h~FS~ng~~~~~si~~~~~~~~~~~~~~~~~~~fdS~p~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 193 (350)
T KOG2521|consen 114 HVFSGNGVRLMYSISLQLIKHEPKAAQLSGGIIFDSAPARSSPVQLGWAVSFSSPPDDYVARWARLNYHITLLTMAGNEG 193 (350)
T ss_pred EEecCCceeehHHHHHHHhhcCchhHhhcCCceEeccccccchhhhcceeccccCchhhHHHHHhcCeEEEEEEeeeccc
Confidence 89999997655433 21 2 33 455666654433211111000 011111111111000 00000
Q ss_pred ccccccc--------ChhhhhhhhccchhhhhcccccCceEEEEEeCCCCccChhhHHHHHhhCC----CcEEEEEcCCC
Q 022960 182 GKLEYRV--------TQESLMDRLSTDIHAACHMICQDCRVLTIHGTKDKMVPAEDALEFDKFIP----NHKLHIIEGAD 249 (289)
Q Consensus 182 ~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~P~l~i~g~~D~~~~~~~~~~~~~~~~----~~~~~~~~~~g 249 (289)
+...... ....+.+++..+ ......+.+.+++..|.++|.+..+++.+... +++.+-+.++-
T Consensus 194 ~~~~~~~~~~~~~~~r~~~~~~r~~~~------~~~~~~~~ly~~s~~d~v~~~~~ie~f~~~~~~~g~~v~s~~~~ds~ 267 (350)
T KOG2521|consen 194 GAYLLGPLAEKISMSRKYHFLDRYEEQ------RNELPWNQLYLYSDNDDVLPADEIEKFIALRREKGVNVKSVKFKDSE 267 (350)
T ss_pred chhhhhhhhhccccccchHHHHHHHhh------hhcccccceeecCCccccccHHHHHHHHHHHHhcCceEEEeeccCcc
Confidence 0000000 001111111111 11125688899999999999998888754432 35666667788
Q ss_pred cccc--cCchHHHHHHHHHHHhhcCCC
Q 022960 250 HEFT--SHQDELASLVIQFIKANYQKD 274 (289)
Q Consensus 250 H~~~--~~~~~~~~~i~~fl~~~~~~~ 274 (289)
|..+ ..+..+.+...+|++......
T Consensus 268 H~~h~r~~p~~y~~~~~~Fl~~~~~~~ 294 (350)
T KOG2521|consen 268 HVAHFRSFPKTYLKKCSEFLRSVISSY 294 (350)
T ss_pred ceeeeccCcHHHHHHHHHHHHhccccc
Confidence 8843 567899999999999876543
No 214
>TIGR03712 acc_sec_asp2 accessory Sec system protein Asp2. This protein is designated Asp2 because, along with SecY2, SecA2, and other proteins it is part of the accessory secretory protein system. The system is involved in the export of serine-rich glycoproteins important for virulence in a number of Gram-positive species, including Streptococcus gordonii and Staphylococcus aureus. This protein family is assigned to transport rather than glycosylation function, but the specific molecular role is unknown.
Probab=96.20 E-value=0.52 Score=39.35 Aligned_cols=113 Identities=12% Similarity=0.072 Sum_probs=60.0
Q ss_pred CCceEEEEEeecC-CCcEEEEEcCCCCCCCCcchHHHHHHHHHcCccEE-EEccccCCCCCCCccccchHH-HHHHHHHH
Q 022960 31 HGEKLVGILHETG-SKQLVIVCHGFQSTKDRIPMVNLAAALEREGISAF-RFDFSGNGESEGSFLYGNYRR-EAEDLRAI 107 (289)
Q Consensus 31 ~g~~l~~~~~~~~-~~~~iv~~hG~~~~~~~~~~~~~~~~l~~~G~~v~-~~d~~G~G~s~~~~~~~~~~~-~~~d~~~~ 107 (289)
.+..+.+++.+.. +.|..|+.-|+-. .+...-..+.+.| |...+ .-|.|=-|.+--. ....+++ ..+-+.+.
T Consensus 274 ~reEi~yYFnPGD~KPPL~VYFSGyR~-aEGFEgy~MMk~L---g~PfLL~~DpRleGGaFYl-Gs~eyE~~I~~~I~~~ 348 (511)
T TIGR03712 274 KRQEFIYYFNPGDFKPPLNVYFSGYRP-AEGFEGYFMMKRL---GAPFLLIGDPRLEGGAFYL-GSDEYEQGIINVIQEK 348 (511)
T ss_pred CCCeeEEecCCcCCCCCeEEeeccCcc-cCcchhHHHHHhc---CCCeEEeeccccccceeee-CcHHHHHHHHHHHHHH
Confidence 3445555444333 5677788888765 3322222233333 55544 4477755443211 0111222 22344444
Q ss_pred HHHHHhcCCceEEEEEeChhHHHHHHHHHhCCCccEEEEeccC
Q 022960 108 VQDFCAKGRVITAIIGHSKGGNAVLLYASKYNDISIVINISGR 150 (289)
Q Consensus 108 i~~l~~~~~~~~~l~G~S~Gg~~a~~~a~~~p~v~~~v~~~~~ 150 (289)
+++|. -+.+.++|-|.|||.+-|+.+++... ..++|+--|.
T Consensus 349 L~~Lg-F~~~qLILSGlSMGTfgAlYYga~l~-P~AIiVgKPL 389 (511)
T TIGR03712 349 LDYLG-FDHDQLILSGLSMGTFGALYYGAKLS-PHAIIVGKPL 389 (511)
T ss_pred HHHhC-CCHHHeeeccccccchhhhhhcccCC-CceEEEcCcc
Confidence 55551 03346999999999999999988652 3455544443
No 215
>PF06850 PHB_depo_C: PHB de-polymerase C-terminus; InterPro: IPR009656 This entry represents the C terminus of bacterial poly(3-hydroxybutyrate) (PHB) de-polymerase. This degrades PHB granules to oligomers and monomers of 3-hydroxy-butyric acid.
Probab=96.03 E-value=0.014 Score=42.08 Aligned_cols=59 Identities=17% Similarity=0.325 Sum_probs=45.8
Q ss_pred CceEEEEEeCCCCccChhhHHHHHhhCCC-----cEEEEEcCCCcccc-cC---chHHHHHHHHHHHh
Q 022960 211 DCRVLTIHGTKDKMVPAEDALEFDKFIPN-----HKLHIIEGADHEFT-SH---QDELASLVIQFIKA 269 (289)
Q Consensus 211 ~~P~l~i~g~~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~gH~~~-~~---~~~~~~~i~~fl~~ 269 (289)
+++.|-|-|+.|.++.+.+.....+.+.+ ...++.+|+||+-. .- .+++...|.+|+.+
T Consensus 134 ~taLlTVEGe~DDIsg~GQT~AA~~LC~glp~~~k~~~~~~g~GHYGlF~G~rwr~~I~P~i~~fi~~ 201 (202)
T PF06850_consen 134 RTALLTVEGERDDISGPGQTHAAHDLCTGLPADMKRHHLQPGVGHYGLFNGSRWREEIYPRIREFIRQ 201 (202)
T ss_pred cceeEEeecCcccCCcchHHHHHHHHhcCCCHHHhhhcccCCCCeeecccchhhhhhhhHHHHHHHHh
Confidence 67888899999999998887776666543 46788899999933 22 26788888888865
No 216
>PLN02310 triacylglycerol lipase
Probab=95.98 E-value=0.015 Score=47.38 Aligned_cols=37 Identities=30% Similarity=0.473 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHhc-CCceEEEEEeChhHHHHHHHHHh
Q 022960 101 AEDLRAIVQDFCAK-GRVITAIIGHSKGGNAVLLYASK 137 (289)
Q Consensus 101 ~~d~~~~i~~l~~~-~~~~~~l~G~S~Gg~~a~~~a~~ 137 (289)
...+..+++..... ...++.+.|||+||.+|+..|..
T Consensus 192 l~eV~~L~~~y~~~~e~~sI~vTGHSLGGALAtLaA~d 229 (405)
T PLN02310 192 MQEVKRLVNFYRGKGEEVSLTVTGHSLGGALALLNAYE 229 (405)
T ss_pred HHHHHHHHHhhcccCCcceEEEEcccHHHHHHHHHHHH
Confidence 34445555444322 22379999999999999988754
No 217
>PLN00413 triacylglycerol lipase
Probab=95.93 E-value=0.016 Score=47.88 Aligned_cols=22 Identities=27% Similarity=0.474 Sum_probs=19.1
Q ss_pred CCceEEEEEeChhHHHHHHHHH
Q 022960 115 GRVITAIIGHSKGGNAVLLYAS 136 (289)
Q Consensus 115 ~~~~~~l~G~S~Gg~~a~~~a~ 136 (289)
...++++.|||+||.+|..++.
T Consensus 282 p~~kliVTGHSLGGALAtLaA~ 303 (479)
T PLN00413 282 PTSKFILSGHSLGGALAILFTA 303 (479)
T ss_pred CCCeEEEEecCHHHHHHHHHHH
Confidence 4558999999999999998875
No 218
>KOG4372 consensus Predicted alpha/beta hydrolase [General function prediction only]
Probab=95.81 E-value=0.013 Score=47.19 Aligned_cols=86 Identities=19% Similarity=0.210 Sum_probs=46.2
Q ss_pred CCcEEEEEcCCCCCCCCcchHHHHHHHHHc--CccEEEEccccCCCCCCCcc---ccchHHHHHHHHHHHHHHHhcCCce
Q 022960 44 SKQLVIVCHGFQSTKDRIPMVNLAAALERE--GISAFRFDFSGNGESEGSFL---YGNYRREAEDLRAIVQDFCAKGRVI 118 (289)
Q Consensus 44 ~~~~iv~~hG~~~~~~~~~~~~~~~~l~~~--G~~v~~~d~~G~G~s~~~~~---~~~~~~~~~d~~~~i~~l~~~~~~~ 118 (289)
++-.+|+.||+-+ ....+|...+...... +..++.....+ ....... ... ...++++.+.+... .+++
T Consensus 79 ~~HLvVlthGi~~-~~~~~~~~~~~~~~kk~p~~~iv~~g~~~--~~~~T~~Gv~~lG-~Rla~~~~e~~~~~---si~k 151 (405)
T KOG4372|consen 79 PKHLVVLTHGLHG-ADMEYWKEKIEQMTKKMPDKLIVVRGKMN--NMCQTFDGVDVLG-ERLAEEVKETLYDY---SIEK 151 (405)
T ss_pred CceEEEecccccc-ccHHHHHHHHHhhhcCCCcceEeeecccc--chhhccccceeee-cccHHHHhhhhhcc---ccce
Confidence 4458999999988 2222355555555554 33233333332 2211111 111 22234433333333 5789
Q ss_pred EEEEEeChhHHHHHHHHH
Q 022960 119 TAIIGHSKGGNAVLLYAS 136 (289)
Q Consensus 119 ~~l~G~S~Gg~~a~~~a~ 136 (289)
+.++|||+||.++..+..
T Consensus 152 ISfvghSLGGLvar~AIg 169 (405)
T KOG4372|consen 152 ISFVGHSLGGLVARYAIG 169 (405)
T ss_pred eeeeeeecCCeeeeEEEE
Confidence 999999999988765433
No 219
>PLN02571 triacylglycerol lipase
Probab=95.79 E-value=0.028 Score=45.98 Aligned_cols=20 Identities=35% Similarity=0.380 Sum_probs=18.0
Q ss_pred eEEEEEeChhHHHHHHHHHh
Q 022960 118 ITAIIGHSKGGNAVLLYASK 137 (289)
Q Consensus 118 ~~~l~G~S~Gg~~a~~~a~~ 137 (289)
++.+.|||+||.+|+..|..
T Consensus 227 sI~VTGHSLGGALAtLaA~d 246 (413)
T PLN02571 227 SITICGHSLGAALATLNAVD 246 (413)
T ss_pred cEEEeccchHHHHHHHHHHH
Confidence 68999999999999998764
No 220
>PLN03037 lipase class 3 family protein; Provisional
Probab=95.77 E-value=0.018 Score=48.09 Aligned_cols=37 Identities=38% Similarity=0.565 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHhcC-CceEEEEEeChhHHHHHHHHHh
Q 022960 101 AEDLRAIVQDFCAKG-RVITAIIGHSKGGNAVLLYASK 137 (289)
Q Consensus 101 ~~d~~~~i~~l~~~~-~~~~~l~G~S~Gg~~a~~~a~~ 137 (289)
.+++..+++...+.+ ..++.+.|||+||.+|+..|..
T Consensus 301 l~eV~rLv~~Yk~~ge~~SItVTGHSLGGALAtLaA~D 338 (525)
T PLN03037 301 MEEVKRLVNFFKDRGEEVSLTITGHSLGGALALLNAYE 338 (525)
T ss_pred HHHHHHHHHhccccCCcceEEEeccCHHHHHHHHHHHH
Confidence 345555555443321 2369999999999999988754
No 221
>PLN02162 triacylglycerol lipase
Probab=95.77 E-value=0.019 Score=47.31 Aligned_cols=22 Identities=27% Similarity=0.489 Sum_probs=18.8
Q ss_pred CCceEEEEEeChhHHHHHHHHH
Q 022960 115 GRVITAIIGHSKGGNAVLLYAS 136 (289)
Q Consensus 115 ~~~~~~l~G~S~Gg~~a~~~a~ 136 (289)
...++++.|||+||.+|..++.
T Consensus 276 p~~kliVTGHSLGGALAtLaAa 297 (475)
T PLN02162 276 KNLKYILTGHSLGGALAALFPA 297 (475)
T ss_pred CCceEEEEecChHHHHHHHHHH
Confidence 4458999999999999998765
No 222
>PF07519 Tannase: Tannase and feruloyl esterase; InterPro: IPR011118 This family includes fungal tannase [] and feruloyl esterase [, ]. It also includes several bacterial homologues of unknown function.
Probab=95.76 E-value=0.11 Score=44.15 Aligned_cols=61 Identities=11% Similarity=0.333 Sum_probs=47.7
Q ss_pred CceEEEEEeCCCCccChhhHHHHHhhC----CC--------cEEEEEcCCCcccc---cCchHHHHHHHHHHHhhc
Q 022960 211 DCRVLTIHGTKDKMVPAEDALEFDKFI----PN--------HKLHIIEGADHEFT---SHQDELASLVIQFIKANY 271 (289)
Q Consensus 211 ~~P~l~i~g~~D~~~~~~~~~~~~~~~----~~--------~~~~~~~~~gH~~~---~~~~~~~~~i~~fl~~~~ 271 (289)
.-.+++.||..|+++|+..+..+++++ .. .++..+||.+|+.- ..+-+.+..+.+|+++-.
T Consensus 353 GGKLI~~HG~aD~~I~p~~ti~YY~~V~~~~g~~~~~v~dF~RlF~vPGm~HC~gG~g~~~~d~l~aL~~WVE~G~ 428 (474)
T PF07519_consen 353 GGKLILYHGWADPLIPPQGTIDYYERVVARMGGALADVDDFYRLFMVPGMGHCGGGPGPDPFDALTALVDWVENGK 428 (474)
T ss_pred CCeEEEEecCCCCccCCCcHHHHHHHHHHhcccccccccceeEEEecCCCcccCCCCCCCCCCHHHHHHHHHhCCC
Confidence 468999999999999998877766543 21 48999999999954 234578999999998644
No 223
>PLN02934 triacylglycerol lipase
Probab=95.57 E-value=0.024 Score=47.35 Aligned_cols=33 Identities=21% Similarity=0.470 Sum_probs=23.7
Q ss_pred HHHHHHHHHhc-CCceEEEEEeChhHHHHHHHHH
Q 022960 104 LRAIVQDFCAK-GRVITAIIGHSKGGNAVLLYAS 136 (289)
Q Consensus 104 ~~~~i~~l~~~-~~~~~~l~G~S~Gg~~a~~~a~ 136 (289)
+...++.+.+. ...++++.|||+||.+|..++.
T Consensus 307 v~~~lk~ll~~~p~~kIvVTGHSLGGALAtLaA~ 340 (515)
T PLN02934 307 VRSKLKSLLKEHKNAKFVVTGHSLGGALAILFPT 340 (515)
T ss_pred HHHHHHHHHHHCCCCeEEEeccccHHHHHHHHHH
Confidence 44444444333 4458999999999999998874
No 224
>KOG1283 consensus Serine carboxypeptidases [Posttranslational modification, protein turnover, chaperones]
Probab=95.49 E-value=0.2 Score=39.29 Aligned_cols=119 Identities=18% Similarity=0.143 Sum_probs=76.5
Q ss_pred CCceEEEEEeec-----CCCcEEEEEcCCCCCCCCcchHHHHHH-------------HHHcCccEEEEccc-cCCCCCCC
Q 022960 31 HGEKLVGILHET-----GSKQLVIVCHGFQSTKDRIPMVNLAAA-------------LEREGISAFRFDFS-GNGESEGS 91 (289)
Q Consensus 31 ~g~~l~~~~~~~-----~~~~~iv~~hG~~~~~~~~~~~~~~~~-------------l~~~G~~v~~~d~~-G~G~s~~~ 91 (289)
++..+.++++.. ..+|..+.+.|.++.+... +-.+.+. +.+. ..++.+|-| |.|.|--.
T Consensus 12 ~~a~~F~wly~~~~~~ks~~pl~lwlqGgpGaSstG-~GNFeE~GPl~~~~~~r~~TWlk~-adllfvDnPVGaGfSyVd 89 (414)
T KOG1283|consen 12 TGAHMFWWLYYATANVKSERPLALWLQGGPGASSTG-FGNFEELGPLDLDGSPRDWTWLKD-ADLLFVDNPVGAGFSYVD 89 (414)
T ss_pred cCceEEEEEeeeccccccCCCeeEEecCCCCCCCcC-ccchhhcCCcccCCCcCCchhhhh-ccEEEecCCCcCceeeec
Confidence 455666655432 2578889999988765431 2222111 2222 578888877 77766422
Q ss_pred --c-cccchHHHHHHHHHHHHHHHhc----CCceEEEEEeChhHHHHHHHHHhCCC----------ccEEEEeccCC
Q 022960 92 --F-LYGNYRREAEDLRAIVQDFCAK----GRVITAIIGHSKGGNAVLLYASKYND----------ISIVINISGRF 151 (289)
Q Consensus 92 --~-~~~~~~~~~~d~~~~i~~l~~~----~~~~~~l~G~S~Gg~~a~~~a~~~p~----------v~~~v~~~~~~ 151 (289)
. ...+..+.+.|+.++++.+-.. ...+++++.-|+||-+|..++....+ +.++++-+++.
T Consensus 90 g~~~Y~~~~~qia~Dl~~llk~f~~~h~e~~t~P~~If~ESYGGKma~k~al~l~~aIk~G~i~~nf~~VaLGDSWI 166 (414)
T KOG1283|consen 90 GSSAYTTNNKQIALDLVELLKGFFTNHPEFKTVPLYIFCESYGGKMAAKFALELDDAIKRGEIKLNFIGVALGDSWI 166 (414)
T ss_pred CcccccccHHHHHHHHHHHHHHHHhcCccccccceEEEEhhcccchhhhhhhhHHHHHhcCceeecceeEEccCccc
Confidence 2 2335567789999999887665 34589999999999999888765321 56777766654
No 225
>PLN02408 phospholipase A1
Probab=95.47 E-value=0.034 Score=44.80 Aligned_cols=21 Identities=33% Similarity=0.325 Sum_probs=18.4
Q ss_pred eEEEEEeChhHHHHHHHHHhC
Q 022960 118 ITAIIGHSKGGNAVLLYASKY 138 (289)
Q Consensus 118 ~~~l~G~S~Gg~~a~~~a~~~ 138 (289)
+|.+.|||+||.+|...|...
T Consensus 201 sI~vTGHSLGGALAtLaA~dl 221 (365)
T PLN02408 201 SLTITGHSLGAALATLTAYDI 221 (365)
T ss_pred eEEEeccchHHHHHHHHHHHH
Confidence 699999999999999887653
No 226
>PLN02324 triacylglycerol lipase
Probab=95.38 E-value=0.049 Score=44.53 Aligned_cols=20 Identities=30% Similarity=0.375 Sum_probs=17.9
Q ss_pred eEEEEEeChhHHHHHHHHHh
Q 022960 118 ITAIIGHSKGGNAVLLYASK 137 (289)
Q Consensus 118 ~~~l~G~S~Gg~~a~~~a~~ 137 (289)
+|.+.|||+||.+|+..|..
T Consensus 216 sItvTGHSLGGALAtLaA~d 235 (415)
T PLN02324 216 SITFTGHSLGAVMSVLSAAD 235 (415)
T ss_pred eEEEecCcHHHHHHHHHHHH
Confidence 69999999999999998754
No 227
>PLN02213 sinapoylglucose-malate O-sinapoyltransferase/ carboxypeptidase
Probab=95.25 E-value=0.15 Score=40.90 Aligned_cols=79 Identities=13% Similarity=0.027 Sum_probs=52.5
Q ss_pred ccEEEEccc-cCCCCCCCcc--ccchHHHHHHHHHHHHHHHhc----CCceEEEEEeChhHHHHHHHHHh----C-----
Q 022960 75 ISAFRFDFS-GNGESEGSFL--YGNYRREAEDLRAIVQDFCAK----GRVITAIIGHSKGGNAVLLYASK----Y----- 138 (289)
Q Consensus 75 ~~v~~~d~~-G~G~s~~~~~--~~~~~~~~~d~~~~i~~l~~~----~~~~~~l~G~S~Gg~~a~~~a~~----~----- 138 (289)
.+++-+|.| |.|-|-.... ..+-...++|+..++..+-+. ...+++|.|-|+||..+-.+|.. .
T Consensus 2 aNvLfiDqPvGvGfSy~~~~~~~~~d~~~a~d~~~fL~~Ff~~~p~~~~~~fyI~GESYaG~YiP~la~~I~~~n~~~~~ 81 (319)
T PLN02213 2 ANIIFLDQPVGSGFSYSKTPIDKTGDISEVKRTHEFLQKWLSRHPQYFSNPLYVVGDSYSGMIVPALVQEISQGNYICCE 81 (319)
T ss_pred ccEEEecCCCCCCCCCCCCCCCccccHHHHHHHHHHHHHHHHhCcccccCCeEEEeeccccchHHHHHHHHHhhcccccC
Confidence 368899998 8887754321 112133457777777665444 34579999999999877766653 1
Q ss_pred CC--ccEEEEeccCCcc
Q 022960 139 ND--ISIVINISGRFNL 153 (289)
Q Consensus 139 p~--v~~~v~~~~~~~~ 153 (289)
+. ++|+++-+|+.+.
T Consensus 82 ~~inLkGi~IGNg~t~~ 98 (319)
T PLN02213 82 PPINLQGYMLGNPVTYM 98 (319)
T ss_pred CceeeeEEEeCCCCCCc
Confidence 23 7899988886543
No 228
>PLN02719 triacylglycerol lipase
Probab=95.16 E-value=0.06 Score=45.10 Aligned_cols=20 Identities=35% Similarity=0.503 Sum_probs=17.9
Q ss_pred eEEEEEeChhHHHHHHHHHh
Q 022960 118 ITAIIGHSKGGNAVLLYASK 137 (289)
Q Consensus 118 ~~~l~G~S~Gg~~a~~~a~~ 137 (289)
+|.+.|||+||.+|...|..
T Consensus 299 sItVTGHSLGGALAtLaA~D 318 (518)
T PLN02719 299 SITVTGHSLGGALAVLSAYD 318 (518)
T ss_pred eEEEecCcHHHHHHHHHHHH
Confidence 79999999999999997753
No 229
>KOG1202 consensus Animal-type fatty acid synthase and related proteins [Lipid transport and metabolism]
Probab=95.00 E-value=0.045 Score=50.33 Aligned_cols=95 Identities=14% Similarity=0.129 Sum_probs=58.1
Q ss_pred CCCcEEEEEcCCCCCCCCcchHHHHHHHHHcCccEEEEccccCCCCC-CCccccchHHHHHHHHHHHHHHHhc-CCceEE
Q 022960 43 GSKQLVIVCHGFQSTKDRIPMVNLAAALEREGISAFRFDFSGNGESE-GSFLYGNYRREAEDLRAIVQDFCAK-GRVITA 120 (289)
Q Consensus 43 ~~~~~iv~~hG~~~~~~~~~~~~~~~~l~~~G~~v~~~d~~G~G~s~-~~~~~~~~~~~~~d~~~~i~~l~~~-~~~~~~ 120 (289)
.+.|+++|+|..-+.... +..++..| ..|.||.-. ......+++..+... |+.+++. ...+..
T Consensus 2121 se~~~~Ffv~pIEG~tt~--l~~la~rl----------e~PaYglQ~T~~vP~dSies~A~~y---irqirkvQP~GPYr 2185 (2376)
T KOG1202|consen 2121 SEEPPLFFVHPIEGFTTA--LESLASRL----------EIPAYGLQCTEAVPLDSIESLAAYY---IRQIRKVQPEGPYR 2185 (2376)
T ss_pred ccCCceEEEeccccchHH--HHHHHhhc----------CCcchhhhccccCCcchHHHHHHHH---HHHHHhcCCCCCee
Confidence 368899999998876532 44444333 233344222 122233444444333 4444433 344789
Q ss_pred EEEeChhHHHHHHHHHhCCC---ccEEEEeccCCc
Q 022960 121 IIGHSKGGNAVLLYASKYND---ISIVINISGRFN 152 (289)
Q Consensus 121 l~G~S~Gg~~a~~~a~~~p~---v~~~v~~~~~~~ 152 (289)
++|+|+|+.++..+|....+ ...+|++++...
T Consensus 2186 l~GYSyG~~l~f~ma~~Lqe~~~~~~lillDGspt 2220 (2376)
T KOG1202|consen 2186 LAGYSYGACLAFEMASQLQEQQSPAPLILLDGSPT 2220 (2376)
T ss_pred eeccchhHHHHHHHHHHHHhhcCCCcEEEecCchH
Confidence 99999999999998876533 677898887553
No 230
>PLN02753 triacylglycerol lipase
Probab=94.99 E-value=0.074 Score=44.73 Aligned_cols=21 Identities=33% Similarity=0.523 Sum_probs=18.5
Q ss_pred ceEEEEEeChhHHHHHHHHHh
Q 022960 117 VITAIIGHSKGGNAVLLYASK 137 (289)
Q Consensus 117 ~~~~l~G~S~Gg~~a~~~a~~ 137 (289)
-+|.+.|||+||.+|+..|..
T Consensus 312 ~sItVTGHSLGGALAtLaA~D 332 (531)
T PLN02753 312 LSITVTGHSLGGALAILSAYD 332 (531)
T ss_pred ceEEEEccCHHHHHHHHHHHH
Confidence 479999999999999998753
No 231
>PF08237 PE-PPE: PE-PPE domain; InterPro: IPR013228 The human pathogen Mycobacterium tuberculosis harbours a large number of genes that encode proteins whose N-termini contain the characteristic motifs Pro-Glu (PE) or Pro-Pro-Glu (PPE). A subgroup of the PE proteins contains polymorphic GC-rich sequences (PGRS), while a subgroup of the PPE proteins contains major polymorphic tandem repeats (MPTR). The function of most of these proteins remains unknown []. However, the PE_PGRS proteins from Mycobacterium marinum are secreted by components of the ESX-5 system that belongs to the recently defined type VII secretion systems []. It has also been reported that the PE_PGRS family of proteins contains multiple calcium-binding and glycine-rich sequence motifs GGXGXD/NXUX. This sequence repeat constitutes a calcium-binding parallel beta-roll or parallel beta-helix structure and is found in RTX toxins secreted by many Gram-negative bacteria []. This domain is found C-terminal to the PE (IPR000084 from INTERPRO) and PPE (IPR000030 from INTERPRO) domains. The secondary structure of this domain is predicted to be a mixture of alpha helices and beta strands [].
Probab=94.81 E-value=0.22 Score=37.58 Aligned_cols=64 Identities=14% Similarity=0.156 Sum_probs=35.8
Q ss_pred CccEEEEccccC-CCCCC---CccccchHHHHHHHHHHHHHHHhcCCceEEEEEeChhHHHHHHHHHhC
Q 022960 74 GISAFRFDFSGN-GESEG---SFLYGNYRREAEDLRAIVQDFCAKGRVITAIIGHSKGGNAVLLYASKY 138 (289)
Q Consensus 74 G~~v~~~d~~G~-G~s~~---~~~~~~~~~~~~d~~~~i~~l~~~~~~~~~l~G~S~Gg~~a~~~a~~~ 138 (289)
|+.+..+++|.. +--.+ .....+..+-++.+.++|+.... ..++++++|+|+|+.++...+.+.
T Consensus 2 ~~~~~~V~YPa~f~P~~g~~~~t~~~Sv~~G~~~L~~ai~~~~~-~~~~vvV~GySQGA~Va~~~~~~l 69 (225)
T PF08237_consen 2 GYNVVAVDYPASFWPVTGIGSPTYDESVAEGVANLDAAIRAAIA-AGGPVVVFGYSQGAVVASNVLRRL 69 (225)
T ss_pred CcceEEecCCchhcCcCCCCCCccchHHHHHHHHHHHHHHhhcc-CCCCEEEEEECHHHHHHHHHHHHH
Confidence 567778888851 11100 11112222223334444433211 456799999999999998877654
No 232
>PLN02847 triacylglycerol lipase
Probab=94.73 E-value=0.24 Score=42.42 Aligned_cols=21 Identities=33% Similarity=0.485 Sum_probs=18.3
Q ss_pred ceEEEEEeChhHHHHHHHHHh
Q 022960 117 VITAIIGHSKGGNAVLLYASK 137 (289)
Q Consensus 117 ~~~~l~G~S~Gg~~a~~~a~~ 137 (289)
-+++++|||+||.+|..++..
T Consensus 251 YkLVITGHSLGGGVAALLAil 271 (633)
T PLN02847 251 FKIKIVGHSLGGGTAALLTYI 271 (633)
T ss_pred CeEEEeccChHHHHHHHHHHH
Confidence 379999999999999888764
No 233
>PLN02761 lipase class 3 family protein
Probab=94.70 E-value=0.059 Score=45.23 Aligned_cols=19 Identities=32% Similarity=0.434 Sum_probs=17.4
Q ss_pred eEEEEEeChhHHHHHHHHH
Q 022960 118 ITAIIGHSKGGNAVLLYAS 136 (289)
Q Consensus 118 ~~~l~G~S~Gg~~a~~~a~ 136 (289)
+|.+.|||+||.+|...|.
T Consensus 295 sItVTGHSLGGALAtLaA~ 313 (527)
T PLN02761 295 SITVTGHSLGASLALVSAY 313 (527)
T ss_pred eEEEeccchHHHHHHHHHH
Confidence 7999999999999998875
No 234
>PLN02802 triacylglycerol lipase
Probab=94.64 E-value=0.073 Score=44.56 Aligned_cols=21 Identities=33% Similarity=0.479 Sum_probs=18.3
Q ss_pred eEEEEEeChhHHHHHHHHHhC
Q 022960 118 ITAIIGHSKGGNAVLLYASKY 138 (289)
Q Consensus 118 ~~~l~G~S~Gg~~a~~~a~~~ 138 (289)
+|++.|||+||.+|...|...
T Consensus 331 sI~VTGHSLGGALAtLaA~dL 351 (509)
T PLN02802 331 SITVTGHSLGAALALLVADEL 351 (509)
T ss_pred eEEEeccchHHHHHHHHHHHH
Confidence 689999999999999877643
No 235
>PF05277 DUF726: Protein of unknown function (DUF726); InterPro: IPR007941 This family consists of several uncharacterised eukaryotic proteins.
Probab=94.48 E-value=0.074 Score=42.66 Aligned_cols=40 Identities=15% Similarity=0.281 Sum_probs=30.1
Q ss_pred CCceEEEEEeChhHHHHHHHHHhCC-----C-ccEEEEeccCCccc
Q 022960 115 GRVITAIIGHSKGGNAVLLYASKYN-----D-ISIVINISGRFNLK 154 (289)
Q Consensus 115 ~~~~~~l~G~S~Gg~~a~~~a~~~p-----~-v~~~v~~~~~~~~~ 154 (289)
+..++.|+|||+|+.+....+.... . |..+++++++....
T Consensus 218 G~RpVtLvG~SLGarvI~~cL~~L~~~~~~~lVe~VvL~Gapv~~~ 263 (345)
T PF05277_consen 218 GERPVTLVGHSLGARVIYYCLLELAERKAFGLVENVVLMGAPVPSD 263 (345)
T ss_pred CCCceEEEeecccHHHHHHHHHHHHhccccCeEeeEEEecCCCCCC
Confidence 5568999999999998876654431 2 78999998876554
No 236
>KOG4569 consensus Predicted lipase [Lipid transport and metabolism]
Probab=93.88 E-value=0.11 Score=41.82 Aligned_cols=34 Identities=26% Similarity=0.377 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHhcCCceEEEEEeChhHHHHHHHHHh
Q 022960 101 AEDLRAIVQDFCAKGRVITAIIGHSKGGNAVLLYASK 137 (289)
Q Consensus 101 ~~d~~~~i~~l~~~~~~~~~l~G~S~Gg~~a~~~a~~ 137 (289)
.+++..++... ..-++.+.|||+||.+|...|..
T Consensus 158 ~~~~~~L~~~~---~~~~i~vTGHSLGgAlA~laa~~ 191 (336)
T KOG4569|consen 158 DAELRRLIELY---PNYSIWVTGHSLGGALASLAALD 191 (336)
T ss_pred HHHHHHHHHhc---CCcEEEEecCChHHHHHHHHHHH
Confidence 34444444444 33479999999999999987764
No 237
>COG2830 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.64 E-value=0.22 Score=34.73 Aligned_cols=77 Identities=13% Similarity=0.213 Sum_probs=45.6
Q ss_pred CcEEEEEcCCCCCCCCcchHHHHHHHHHcCcc-EEEEccccCCCCCCCccccchHHHHHHHHHHHHHHHhcCCceEEEEE
Q 022960 45 KQLVIVCHGFQSTKDRIPMVNLAAALEREGIS-AFRFDFSGNGESEGSFLYGNYRREAEDLRAIVQDFCAKGRVITAIIG 123 (289)
Q Consensus 45 ~~~iv~~hG~~~~~~~~~~~~~~~~l~~~G~~-v~~~d~~G~G~s~~~~~~~~~~~~~~d~~~~i~~l~~~~~~~~~l~G 123 (289)
...||+.-|++..+.. ...+ ....++. ++++|+.... .++ |+. ..+.+-||.
T Consensus 11 d~LIvyFaGwgtpps~--v~HL---ilpeN~dl~lcYDY~dl~--------ldf-----Dfs---------Ay~hirlvA 63 (214)
T COG2830 11 DHLIVYFAGWGTPPSA--VNHL---ILPENHDLLLCYDYQDLN--------LDF-----DFS---------AYRHIRLVA 63 (214)
T ss_pred CEEEEEEecCCCCHHH--Hhhc---cCCCCCcEEEEeehhhcC--------ccc-----chh---------hhhhhhhhh
Confidence 3478888888877632 2222 2233454 5778886221 111 111 123468999
Q ss_pred eChhHHHHHHHHHhCCCccEEEEecc
Q 022960 124 HSKGGNAVLLYASKYNDISIVINISG 149 (289)
Q Consensus 124 ~S~Gg~~a~~~a~~~p~v~~~v~~~~ 149 (289)
+|||-.+|-+++...+ ++..+.+++
T Consensus 64 wSMGVwvAeR~lqg~~-lksatAiNG 88 (214)
T COG2830 64 WSMGVWVAERVLQGIR-LKSATAING 88 (214)
T ss_pred hhHHHHHHHHHHhhcc-ccceeeecC
Confidence 9999999998776554 566666655
No 238
>PF07519 Tannase: Tannase and feruloyl esterase; InterPro: IPR011118 This family includes fungal tannase [] and feruloyl esterase [, ]. It also includes several bacterial homologues of unknown function.
Probab=93.26 E-value=0.15 Score=43.30 Aligned_cols=79 Identities=24% Similarity=0.325 Sum_probs=53.1
Q ss_pred HcCccEEEEccccCCCCCC----CccccchHH-----------HHHHHHHHHHHHHhcCCceEEEEEeChhHHHHHHHHH
Q 022960 72 REGISAFRFDFSGNGESEG----SFLYGNYRR-----------EAEDLRAIVQDFCAKGRVITAIIGHSKGGNAVLLYAS 136 (289)
Q Consensus 72 ~~G~~v~~~d~~G~G~s~~----~~~~~~~~~-----------~~~d~~~~i~~l~~~~~~~~~l~G~S~Gg~~a~~~a~ 136 (289)
.+||.++.-|- ||..+.. ... .+.+. ...-..++++..-.+..+.-+..|.|.||.-++..|.
T Consensus 57 ~~G~A~~~TD~-Gh~~~~~~~~~~~~-~n~~~~~dfa~ra~h~~~~~aK~l~~~~Yg~~p~~sY~~GcS~GGRqgl~~AQ 134 (474)
T PF07519_consen 57 ARGYATASTDS-GHQGSAGSDDASFG-NNPEALLDFAYRALHETTVVAKALIEAFYGKAPKYSYFSGCSTGGRQGLMAAQ 134 (474)
T ss_pred hcCeEEEEecC-CCCCCccccccccc-CCHHHHHHHHhhHHHHHHHHHHHHHHHHhCCCCCceEEEEeCCCcchHHHHHH
Confidence 45899999984 5654432 111 11111 1122233344443346677899999999999999999
Q ss_pred hCCC-ccEEEEeccCCc
Q 022960 137 KYND-ISIVINISGRFN 152 (289)
Q Consensus 137 ~~p~-v~~~v~~~~~~~ 152 (289)
++|+ ++++|.-+|...
T Consensus 135 ryP~dfDGIlAgaPA~~ 151 (474)
T PF07519_consen 135 RYPEDFDGILAGAPAIN 151 (474)
T ss_pred hChhhcCeEEeCCchHH
Confidence 9999 999999998553
No 239
>PLN02213 sinapoylglucose-malate O-sinapoyltransferase/ carboxypeptidase
Probab=93.19 E-value=0.36 Score=38.79 Aligned_cols=59 Identities=19% Similarity=0.249 Sum_probs=45.9
Q ss_pred CceEEEEEeCCCCccChhhHHHHHhhCC------------------------C-cEEEEEcCCCcccccCchHHHHHHHH
Q 022960 211 DCRVLTIHGTKDKMVPAEDALEFDKFIP------------------------N-HKLHIIEGADHEFTSHQDELASLVIQ 265 (289)
Q Consensus 211 ~~P~l~i~g~~D~~~~~~~~~~~~~~~~------------------------~-~~~~~~~~~gH~~~~~~~~~~~~i~~ 265 (289)
.++||+..|+.|-+|+.-..+.+.+.+. + .++..+.++||.....|+...+.+.+
T Consensus 233 ~i~VliY~Gd~D~icn~~g~~~wi~~L~w~~~~~~~~w~~~~~~~G~vk~y~~~ltf~~V~~AGHmV~~qP~~al~m~~~ 312 (319)
T PLN02213 233 GYRSLIYSGDHDIAVPFLATQAWIRSLNYSPIHNWRPWMINNQIAGYTRAYSNKMTFATIKAGGHTAEYRPNETFIMFQR 312 (319)
T ss_pred CceEEEEECCcCeeCCcHhHHHHHHhcCCCCCCCCccccCCCEeeeEEEEecCcceEEEEcCCCCCCCcCHHHHHHHHHH
Confidence 5799999999999999877776655542 1 34566778999976677888889999
Q ss_pred HHHh
Q 022960 266 FIKA 269 (289)
Q Consensus 266 fl~~ 269 (289)
|+..
T Consensus 313 fi~~ 316 (319)
T PLN02213 313 WISG 316 (319)
T ss_pred HHcC
Confidence 9854
No 240
>PF06441 EHN: Epoxide hydrolase N terminus; InterPro: IPR010497 This entry represents the N-terminal region of the eukaryotic epoxide hydrolase protein. Epoxide hydrolases (3.3.2.3 from EC) comprise a group of functionally related enzymes that catalyse the addition of water to oxirane compounds (epoxides), thereby usually generating vicinal trans-diols. EHs have been found in all types of living organisms, including mammals, invertebrates, plants, fungi and bacteria. In animals, the major interest in EH is directed towards their detoxification capacity for epoxides since they are important safeguards against the cytotoxic and genotoxic potential of oxirane derivatives that are often reactive electrophiles because of the high tension of the three-membered ring system and the strong polarisation of the C--O bonds. This is of significant relevance because epoxides are frequent intermediary metabolites, which arise during the biotransformation of foreign compounds []. This domain is often found in conjunction with IPR000073 from INTERPRO.; GO: 0004301 epoxide hydrolase activity, 0009636 response to toxin, 0016020 membrane; PDB: 3G0I_B 3G02_A 1QO7_A.
Probab=92.85 E-value=0.26 Score=32.55 Aligned_cols=28 Identities=14% Similarity=0.204 Sum_probs=16.2
Q ss_pred CCceEEEEEeecC--CCcEEEEEcCCCCCC
Q 022960 31 HGEKLVGILHETG--SKQLVIVCHGFQSTK 58 (289)
Q Consensus 31 ~g~~l~~~~~~~~--~~~~iv~~hG~~~~~ 58 (289)
+|..++.....+. +..+||++||++++-
T Consensus 76 ~g~~iHFih~rs~~~~aiPLll~HGWPgSf 105 (112)
T PF06441_consen 76 DGLDIHFIHVRSKRPNAIPLLLLHGWPGSF 105 (112)
T ss_dssp TTEEEEEEEE--S-TT-EEEEEE--SS--G
T ss_pred eeEEEEEEEeeCCCCCCeEEEEECCCCccH
Confidence 5888886554433 566999999999986
No 241
>PF09994 DUF2235: Uncharacterized alpha/beta hydrolase domain (DUF2235); InterPro: IPR018712 This domain has no known function.
Probab=92.85 E-value=1.6 Score=34.35 Aligned_cols=94 Identities=19% Similarity=0.305 Sum_probs=53.6
Q ss_pred CcEEEEEcCCCCCCCCcc----hHHHHHHH-HHcCccEEEEccccCCCC--------CCCc---cccch-HHHHHHHHHH
Q 022960 45 KQLVIVCHGFQSTKDRIP----MVNLAAAL-EREGISAFRFDFSGNGES--------EGSF---LYGNY-RREAEDLRAI 107 (289)
Q Consensus 45 ~~~iv~~hG~~~~~~~~~----~~~~~~~l-~~~G~~v~~~d~~G~G~s--------~~~~---~~~~~-~~~~~d~~~~ 107 (289)
+..|||+-|.+.+..... ...+.+.+ ...+-..+.+=.+|-|.. .... ....+ ....+.+..+
T Consensus 1 k~iv~~fDGT~n~~~~~~~~TNV~rL~~~~~~~~~~~q~~~Y~~GvGt~~~~~~~~~~~~~~~~~~~a~g~g~~~~I~~a 80 (277)
T PF09994_consen 1 KRIVVFFDGTGNNPDNDPPPTNVARLYDAYKDRDGERQIVYYIPGVGTEFGSEFGESGRALDRLLGGAFGWGIEARIRDA 80 (277)
T ss_pred CcEEEEecCCCCCCCCCccccHHHHHHHHhhccCCCceeEEEecccccccccccccccchhhhccCchhhcchHHHHHHH
Confidence 356788888776654311 23444555 222335566667787771 1100 00011 1223445555
Q ss_pred HHHHHhc--CCceEEEEEeChhHHHHHHHHHhC
Q 022960 108 VQDFCAK--GRVITAIIGHSKGGNAVLLYASKY 138 (289)
Q Consensus 108 i~~l~~~--~~~~~~l~G~S~Gg~~a~~~a~~~ 138 (289)
..++.+. ..++|.++|+|-|++.|-.++..-
T Consensus 81 y~~l~~~~~~gd~I~lfGFSRGA~~AR~~a~~i 113 (277)
T PF09994_consen 81 YRFLSKNYEPGDRIYLFGFSRGAYTARAFANMI 113 (277)
T ss_pred HHHHHhccCCcceEEEEecCccHHHHHHHHHHH
Confidence 5555443 556899999999999999988654
No 242
>COG5153 CVT17 Putative lipase essential for disintegration of autophagic bodies inside the vacuole [Intracellular trafficking and secretion / Lipid metabolism]
Probab=91.97 E-value=0.27 Score=37.80 Aligned_cols=34 Identities=24% Similarity=0.307 Sum_probs=23.9
Q ss_pred CCceEEEEEeChhHHHHHHHHHhCCCccEEEEecc
Q 022960 115 GRVITAIIGHSKGGNAVLLYASKYNDISIVINISG 149 (289)
Q Consensus 115 ~~~~~~l~G~S~Gg~~a~~~a~~~p~v~~~v~~~~ 149 (289)
...++.|.|||+||.+|..+..++. +-.+.+-+|
T Consensus 274 pda~iwlTGHSLGGa~AsLlG~~fg-lP~VaFesP 307 (425)
T COG5153 274 PDARIWLTGHSLGGAIASLLGIRFG-LPVVAFESP 307 (425)
T ss_pred CCceEEEeccccchHHHHHhccccC-CceEEecCc
Confidence 3448999999999999998777653 333443343
No 243
>KOG4540 consensus Putative lipase essential for disintegration of autophagic bodies inside the vacuole [Intracellular trafficking, secretion, and vesicular transport; Lipid transport and metabolism]
Probab=91.97 E-value=0.27 Score=37.80 Aligned_cols=34 Identities=24% Similarity=0.307 Sum_probs=23.9
Q ss_pred CCceEEEEEeChhHHHHHHHHHhCCCccEEEEecc
Q 022960 115 GRVITAIIGHSKGGNAVLLYASKYNDISIVINISG 149 (289)
Q Consensus 115 ~~~~~~l~G~S~Gg~~a~~~a~~~p~v~~~v~~~~ 149 (289)
...++.|.|||+||.+|..+..++. +-.+.+-+|
T Consensus 274 pda~iwlTGHSLGGa~AsLlG~~fg-lP~VaFesP 307 (425)
T KOG4540|consen 274 PDARIWLTGHSLGGAIASLLGIRFG-LPVVAFESP 307 (425)
T ss_pred CCceEEEeccccchHHHHHhccccC-CceEEecCc
Confidence 3448999999999999998777653 333443343
No 244
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=90.70 E-value=1.8 Score=29.24 Aligned_cols=34 Identities=26% Similarity=0.388 Sum_probs=25.5
Q ss_pred cCCCcEEEEEcCCCCCCCCcchHHHHHHHHHcCc
Q 022960 42 TGSKQLVIVCHGFQSTKDRIPMVNLAAALEREGI 75 (289)
Q Consensus 42 ~~~~~~iv~~hG~~~~~~~~~~~~~~~~l~~~G~ 75 (289)
.+++|.|+-+||+.|.+.++.-+-+++.|-..|.
T Consensus 49 ~p~KpLVlSfHG~tGtGKn~v~~liA~~ly~~G~ 82 (127)
T PF06309_consen 49 NPRKPLVLSFHGWTGTGKNFVSRLIAEHLYKSGM 82 (127)
T ss_pred CCCCCEEEEeecCCCCcHHHHHHHHHHHHHhccc
Confidence 3478999999999999977555566777666553
No 245
>PF03283 PAE: Pectinacetylesterase
Probab=90.32 E-value=1.2 Score=36.50 Aligned_cols=36 Identities=28% Similarity=0.381 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHhc---CCceEEEEEeChhHHHHHHHHH
Q 022960 101 AEDLRAIVQDFCAK---GRVITAIIGHSKGGNAVLLYAS 136 (289)
Q Consensus 101 ~~d~~~~i~~l~~~---~~~~~~l~G~S~Gg~~a~~~a~ 136 (289)
...+.+++++|..+ +.++++|.|.|.||.-++..+.
T Consensus 137 ~~i~~avl~~l~~~gl~~a~~vlltG~SAGG~g~~~~~d 175 (361)
T PF03283_consen 137 YRILRAVLDDLLSNGLPNAKQVLLTGCSAGGLGAILHAD 175 (361)
T ss_pred HHHHHHHHHHHHHhcCcccceEEEeccChHHHHHHHHHH
Confidence 35677888888665 4578999999999998877554
No 246
>KOG4389 consensus Acetylcholinesterase/Butyrylcholinesterase [Signal transduction mechanisms]
Probab=90.27 E-value=0.79 Score=38.35 Aligned_cols=114 Identities=13% Similarity=0.005 Sum_probs=61.6
Q ss_pred EEEEEeecC----CCcEEEEEcCCCCCCCCc-chHHHHHHHHHcC-ccEEEEccc----cC---CCCCCCccccchHHHH
Q 022960 35 LVGILHETG----SKQLVIVCHGFQSTKDRI-PMVNLAAALEREG-ISAFRFDFS----GN---GESEGSFLYGNYRREA 101 (289)
Q Consensus 35 l~~~~~~~~----~~~~iv~~hG~~~~~~~~-~~~~~~~~l~~~G-~~v~~~d~~----G~---G~s~~~~~~~~~~~~~ 101 (289)
|+..++.|. +..++|++-|+|.-..+. .--.=.+.|+..+ .-|+.+++| |+ +.....+....+
T Consensus 121 LYlNVW~P~~~p~n~tVlVWiyGGGF~sGt~SLdvYdGk~la~~envIvVs~NYRvG~FGFL~l~~~~eaPGNmGl---- 196 (601)
T KOG4389|consen 121 LYLNVWAPAADPYNLTVLVWIYGGGFYSGTPSLDVYDGKFLAAVENVIVVSMNYRVGAFGFLYLPGHPEAPGNMGL---- 196 (601)
T ss_pred eEEEEeccCCCCCCceEEEEEEcCccccCCcceeeeccceeeeeccEEEEEeeeeeccceEEecCCCCCCCCccch----
Confidence 444445442 455888888877544321 1112234555543 445667776 21 122222233332
Q ss_pred HHHHHHHHHHHhc------CCceEEEEEeChhHHHHHHHHHhCCC----ccEEEEeccCCcc
Q 022960 102 EDLRAIVQDFCAK------GRVITAIIGHSKGGNAVLLYASKYND----ISIVINISGRFNL 153 (289)
Q Consensus 102 ~d~~~~i~~l~~~------~~~~~~l~G~S~Gg~~a~~~a~~~p~----v~~~v~~~~~~~~ 153 (289)
-|-.-+++|++++ +.+++.|+|.|.|+.-...-+.. |. ++..|+-++....
T Consensus 197 ~DQqLAl~WV~~Ni~aFGGnp~~vTLFGESAGaASv~aHLls-P~S~glF~raIlQSGS~~~ 257 (601)
T KOG4389|consen 197 LDQQLALQWVQENIAAFGGNPSRVTLFGESAGAASVVAHLLS-PGSRGLFHRAILQSGSLNN 257 (601)
T ss_pred HHHHHHHHHHHHhHHHhCCCcceEEEeccccchhhhhheecC-CCchhhHHHHHhhcCCCCC
Confidence 2334456666655 57799999999998654432221 22 7777777775543
No 247
>PF06792 UPF0261: Uncharacterised protein family (UPF0261); InterPro: IPR008322 The proteins in this entry are functionally uncharacterised.
Probab=89.92 E-value=6.8 Score=32.40 Aligned_cols=97 Identities=16% Similarity=0.109 Sum_probs=61.9
Q ss_pred EEEEEcCCCCCCCCcchHHHHHHHHHcCccEEEEccccCCCCCCCcc-----------------------ccchHHHHHH
Q 022960 47 LVIVCHGFQSTKDRIPMVNLAAALEREGISAFRFDFSGNGESEGSFL-----------------------YGNYRREAED 103 (289)
Q Consensus 47 ~iv~~hG~~~~~~~~~~~~~~~~l~~~G~~v~~~d~~G~G~s~~~~~-----------------------~~~~~~~~~d 103 (289)
.|+++ |...++.. .+..+.+.+.+.|..++.+|.-=.+....... ......+.+-
T Consensus 3 tI~ii-gT~DTK~~-E~~yl~~~i~~~G~~v~~iDvg~~~~~~~~~di~~~eVa~~~g~~~~~~~~~~dRg~ai~~M~~g 80 (403)
T PF06792_consen 3 TIAII-GTLDTKGE-ELLYLRDQIEAQGVEVLLIDVGTLGEPSFPPDISREEVARAAGDSIEAVRSSGDRGEAIEAMARG 80 (403)
T ss_pred EEEEE-EccCCCHH-HHHHHHHHHHHCCCcEEEEEcCCCCCCCCCCCcCHHHHHHhcCCChHHhhccCCHHHHHHHHHHH
Confidence 34444 54555442 47778888999999999999754444332100 0111223344
Q ss_pred HHHHHHHHHhc-CCceEEEEEeChhHHHHHHHHHhCCC-ccEEE
Q 022960 104 LRAIVQDFCAK-GRVITAIIGHSKGGNAVLLYASKYND-ISIVI 145 (289)
Q Consensus 104 ~~~~i~~l~~~-~~~~~~l~G~S~Gg~~a~~~a~~~p~-v~~~v 145 (289)
+..++..+..+ .+.-++-+|-|.|..++...+...|- +-+++
T Consensus 81 a~~~v~~l~~~g~i~Gvi~~GGs~GT~lat~aMr~LPiG~PKlm 124 (403)
T PF06792_consen 81 AARFVSDLYDEGKIDGVIGIGGSGGTALATAAMRALPIGFPKLM 124 (403)
T ss_pred HHHHHHHHHhcCCccEEEEecCCccHHHHHHHHHhCCCCCCeEE
Confidence 55555555443 46678999999999999999988876 55554
No 248
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=89.76 E-value=4.7 Score=29.13 Aligned_cols=40 Identities=23% Similarity=0.247 Sum_probs=33.9
Q ss_pred CCCcEEEEEcCCCCCCCCcchHHHHHHHHHcCccEEEEcc
Q 022960 43 GSKQLVIVCHGFQSTKDRIPMVNLAAALEREGISAFRFDF 82 (289)
Q Consensus 43 ~~~~~iv~~hG~~~~~~~~~~~~~~~~l~~~G~~v~~~d~ 82 (289)
+.++.+|++-|+.+++.+-.-..+.+.|.+.|++++..|=
T Consensus 20 ~~~~~viW~TGLSGsGKSTiA~ale~~L~~~G~~~y~LDG 59 (197)
T COG0529 20 GQKGAVIWFTGLSGSGKSTIANALEEKLFAKGYHVYLLDG 59 (197)
T ss_pred CCCCeEEEeecCCCCCHHHHHHHHHHHHHHcCCeEEEecC
Confidence 4678999999999988765667788889999999999983
No 249
>KOG2029 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.68 E-value=0.94 Score=38.84 Aligned_cols=51 Identities=22% Similarity=0.132 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHHhc---CCceEEEEEeChhHHHHHHHHHhC-----CC-------ccEEEEeccC
Q 022960 100 EAEDLRAIVQDFCAK---GRVITAIIGHSKGGNAVLLYASKY-----ND-------ISIVINISGR 150 (289)
Q Consensus 100 ~~~d~~~~i~~l~~~---~~~~~~l~G~S~Gg~~a~~~a~~~-----p~-------v~~~v~~~~~ 150 (289)
.+.-..++++.+... +..+++.+||||||.++-.++... |+ -+++|+++.+
T Consensus 506 l~~Rs~~lleql~~~~VG~~RPivwI~HSmGGLl~K~lLlda~~S~kP~ms~l~kNtrGiiFls~P 571 (697)
T KOG2029|consen 506 LAARSNELLEQLQAAGVGDDRPIVWIGHSMGGLLAKKLLLDAYCSSKPDMSNLNKNTRGIIFLSVP 571 (697)
T ss_pred HHHHHHHHHHHHHHhccCCCCceEEEecccchHHHHHHHHHHhhcCCchhhhhhccCCceEEEecC
Confidence 344455666666555 355899999999998886665432 32 4677777654
No 250
>PF09949 DUF2183: Uncharacterized conserved protein (DUF2183); InterPro: IPR019236 This domain, found in various bacterial and fungal proteins, has no known function.
Probab=89.14 E-value=4.4 Score=26.18 Aligned_cols=82 Identities=18% Similarity=0.203 Sum_probs=50.7
Q ss_pred chHHHHHHHHHcCccEEEEccccCCCCCCCccccch-HHHHHHHHHHHHHHHhcCCceEEEEEeChhH--HHHHHHHHhC
Q 022960 62 PMVNLAAALEREGISAFRFDFSGNGESEGSFLYGNY-RREAEDLRAIVQDFCAKGRVITAIIGHSKGG--NAVLLYASKY 138 (289)
Q Consensus 62 ~~~~~~~~l~~~G~~v~~~d~~G~G~s~~~~~~~~~-~~~~~d~~~~i~~l~~~~~~~~~l~G~S~Gg--~~a~~~a~~~ 138 (289)
.+..+.+.+..+|+-.=.+.++..|.+....-...- +.-...+..+++.. ...++++||-|--. -+-..++.++
T Consensus 12 ly~~l~~Fl~~~~~P~G~~~Lr~~~~~~~~~~~~~~~~~K~~~i~~i~~~f---P~~kfiLIGDsgq~DpeiY~~ia~~~ 88 (100)
T PF09949_consen 12 LYPFLRDFLRRNGFPAGPLLLRDYGPSLSGLFKSGAEEHKRDNIERILRDF---PERKFILIGDSGQHDPEIYAEIARRF 88 (100)
T ss_pred HHHHHHHHHHhcCCCCCceEcccCCccccccccCCchhHHHHHHHHHHHHC---CCCcEEEEeeCCCcCHHHHHHHHHHC
Confidence 366677777777887777777777554322211111 12234555555555 55689999999665 3344567788
Q ss_pred CC-ccEEEE
Q 022960 139 ND-ISIVIN 146 (289)
Q Consensus 139 p~-v~~~v~ 146 (289)
|+ |.++.+
T Consensus 89 P~~i~ai~I 97 (100)
T PF09949_consen 89 PGRILAIYI 97 (100)
T ss_pred CCCEEEEEE
Confidence 98 777653
No 251
>COG3673 Uncharacterized conserved protein [Function unknown]
Probab=88.49 E-value=11 Score=30.04 Aligned_cols=93 Identities=19% Similarity=0.200 Sum_probs=57.5
Q ss_pred CCcEEEEEcCCCC----CCCCcchHHHHHHHHH-cCccEEEEccccCCCCCCCc--------c---cc-ch-HHHHHHHH
Q 022960 44 SKQLVIVCHGFQS----TKDRIPMVNLAAALER-EGISAFRFDFSGNGESEGSF--------L---YG-NY-RREAEDLR 105 (289)
Q Consensus 44 ~~~~iv~~hG~~~----~~~~~~~~~~~~~l~~-~G~~v~~~d~~G~G~s~~~~--------~---~~-~~-~~~~~d~~ 105 (289)
.+..|+++-|... ..-. -...+...|.. .+..++++--+|.|.-.-.. . .. .+ ......+.
T Consensus 30 ~k~lV~CfDGT~nrfg~qp~T-NVv~Ly~sl~r~d~~~qv~yYd~GVGt~Gfdavvdvrrrl~~~~~gsmFg~gL~~nI~ 108 (423)
T COG3673 30 MKRLVFCFDGTWNRFGAQPPT-NVVLLYASLQRADGVTQVIYYDEGVGTGGFDAVVDVRRRLEKLSGGSMFGQGLVQNIR 108 (423)
T ss_pred cceEEEEecCchhhcCCCCcc-hHHHHHHHHhcCCCceEEEEecCCcccccchhhHHHHHhhhhhhhHHHHHHHHHHHHH
Confidence 5667788877432 2211 13445566665 47888888888887653111 0 00 00 22345566
Q ss_pred HHHHHHHhc--CCceEEEEEeChhHHHHHHHHHh
Q 022960 106 AIVQDFCAK--GRVITAIIGHSKGGNAVLLYASK 137 (289)
Q Consensus 106 ~~i~~l~~~--~~~~~~l~G~S~Gg~~a~~~a~~ 137 (289)
.+...|... ..++|+++|+|-|+++|--+|..
T Consensus 109 ~AYrFL~~~yepGD~Iy~FGFSRGAf~aRVlagm 142 (423)
T COG3673 109 EAYRFLIFNYEPGDEIYAFGFSRGAFSARVLAGM 142 (423)
T ss_pred HHHHHHHHhcCCCCeEEEeeccchhHHHHHHHHH
Confidence 666666555 45689999999999999877764
No 252
>PRK02399 hypothetical protein; Provisional
Probab=88.25 E-value=10 Score=31.34 Aligned_cols=96 Identities=19% Similarity=0.158 Sum_probs=60.1
Q ss_pred EEEcCCCCCCCCcchHHHHHHHHHcCccEEEEccccCCCCCCCc-------------------c----ccchHHHHHHHH
Q 022960 49 IVCHGFQSTKDRIPMVNLAAALEREGISAFRFDFSGNGESEGSF-------------------L----YGNYRREAEDLR 105 (289)
Q Consensus 49 v~~hG~~~~~~~~~~~~~~~~l~~~G~~v~~~d~~G~G~s~~~~-------------------~----~~~~~~~~~d~~ 105 (289)
|++=|...++.. .+..+.+.+.+.|..|+.+|.-..|...... . ......+.+-+.
T Consensus 6 I~iigT~DTK~~-E~~yl~~~i~~~g~~v~~iDv~~~~~p~~~~dis~~~Va~~~g~~~~~~~~~~dRg~ai~~M~~ga~ 84 (406)
T PRK02399 6 IYIAGTLDTKGE-ELAYVKDLIEAAGLEVVTVDVSGLGEPPFEPDISAEEVAEAAGDGIEAVFCGGDRGSAMAAMAEGAA 84 (406)
T ss_pred EEEEeccCCcHH-HHHHHHHHHHHCCCceEEEecCCCCCCCCCCCCCHHHHHHHcCCCHHHhhcCccHHHHHHHHHHHHH
Confidence 444465655543 4667788888889999999984443211000 0 001122334445
Q ss_pred HHHHHHHhc-CCceEEEEEeChhHHHHHHHHHhCCC-ccEEE
Q 022960 106 AIVQDFCAK-GRVITAIIGHSKGGNAVLLYASKYND-ISIVI 145 (289)
Q Consensus 106 ~~i~~l~~~-~~~~~~l~G~S~Gg~~a~~~a~~~p~-v~~~v 145 (289)
.++..|.++ .+.-++-+|-|.|..++...+...|- +-+++
T Consensus 85 ~~v~~L~~~g~i~gviglGGs~GT~lat~aMr~LPiG~PKlm 126 (406)
T PRK02399 85 AFVRELYERGDVAGVIGLGGSGGTALATPAMRALPIGVPKLM 126 (406)
T ss_pred HHHHHHHhcCCccEEEEecCcchHHHHHHHHHhCCCCCCeEE
Confidence 555544444 57778999999999999999888886 55554
No 253
>COG4822 CbiK Cobalamin biosynthesis protein CbiK, Co2+ chelatase [Coenzyme metabolism]
Probab=88.19 E-value=2.7 Score=31.09 Aligned_cols=62 Identities=18% Similarity=0.287 Sum_probs=42.3
Q ss_pred CCcEEEEEcCCCCCCCCcchHHHHHHHHHcCc-cEEEEccccCCCCCCCccccchHHHHHHHHHHHHHHHhcCCceEEEE
Q 022960 44 SKQLVIVCHGFQSTKDRIPMVNLAAALEREGI-SAFRFDFSGNGESEGSFLYGNYRREAEDLRAIVQDFCAKGRVITAII 122 (289)
Q Consensus 44 ~~~~iv~~hG~~~~~~~~~~~~~~~~l~~~G~-~v~~~d~~G~G~s~~~~~~~~~~~~~~d~~~~i~~l~~~~~~~~~l~ 122 (289)
...+|+++||...++.. .|..+-..|.+.|| .|+....-|+ -++..+++++++++.+.+.|+
T Consensus 137 ~e~~vlmgHGt~h~s~~-~YacLd~~~~~~~f~~v~v~~ve~y----------------P~~d~vi~~l~~~~~~~v~L~ 199 (265)
T COG4822 137 DEILVLMGHGTDHHSNA-AYACLDHVLDEYGFDNVFVAAVEGY----------------PLVDTVIEYLRKNGIKEVHLI 199 (265)
T ss_pred CeEEEEEecCCCccHHH-HHHHHHHHHHhcCCCceEEEEecCC----------------CcHHHHHHHHHHcCCceEEEe
Confidence 34588899998887754 45666666777788 5665554432 245667888888888777665
No 254
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=85.00 E-value=5.3 Score=28.24 Aligned_cols=39 Identities=23% Similarity=0.255 Sum_probs=30.1
Q ss_pred CcEEEEEcCCCCCCCCcchHHHHHHHHHcCccEEEEccc
Q 022960 45 KQLVIVCHGFQSTKDRIPMVNLAAALEREGISAFRFDFS 83 (289)
Q Consensus 45 ~~~iv~~hG~~~~~~~~~~~~~~~~l~~~G~~v~~~d~~ 83 (289)
++.+|++-|..+++.+-.-..+.+.|.+.|+.++.+|-.
T Consensus 1 ~g~vIwltGlsGsGKtTlA~~L~~~L~~~g~~~~~LDgD 39 (156)
T PF01583_consen 1 KGFVIWLTGLSGSGKTTLARALERRLFARGIKVYLLDGD 39 (156)
T ss_dssp S-EEEEEESSTTSSHHHHHHHHHHHHHHTTS-EEEEEHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEecCc
Confidence 478999999999886555667778888889999999743
No 255
>PF10081 Abhydrolase_9: Alpha/beta-hydrolase family; InterPro: IPR012037 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=84.26 E-value=8.9 Score=29.99 Aligned_cols=38 Identities=16% Similarity=0.086 Sum_probs=27.1
Q ss_pred CCceEEEEEeChhHHHHHHHHHhCC---C-ccEEEEeccCCc
Q 022960 115 GRVITAIIGHSKGGNAVLLYASKYN---D-ISIVINISGRFN 152 (289)
Q Consensus 115 ~~~~~~l~G~S~Gg~~a~~~a~~~p---~-v~~~v~~~~~~~ 152 (289)
...+++|.|.|+|++-+...-.... . +++.+..+++..
T Consensus 107 ~RPkL~l~GeSLGa~g~~~af~~~~~~~~~vdGalw~GpP~~ 148 (289)
T PF10081_consen 107 RRPKLYLYGESLGAYGGEAAFDGLDDLRDRVDGALWVGPPFF 148 (289)
T ss_pred cCCeEEEeccCccccchhhhhccHHHhhhhcceEEEeCCCCC
Confidence 4458999999999987665433222 2 889998887654
No 256
>cd07198 Patatin Patatin-like phospholipase. Patatin is a storage protein of the potato tuber that shows Phospholipase A2 activity (PLA2; EC 3.1.1.4). Patatin catalyzes the nonspecific hydrolysis of phospholipids, glycolipids, sulfolipids, and mono- and diacylglycerols, thereby showing lipid acyl hydrolase activity. The active site includes an oxyanion hole with a conserved GGxR motif; it is found in almost all the members of this family. The catalytic dyad is formed by a serine and an aspartate. Patatin belongs to the alpha-beta hydrolase family which is identified by a characteristic nucleophile elbow with a consensus sequence of Sm-X-Nu-Sm (Sm = small residue, X = any residue and Nu = nucleophile). Members of this family have been found also in vertebrates. This family includes PNPLA (1-9), TGL (3-5), ExoU-like, and SDP1-like subfamilies. There are some additional hypothetical proteins included in this family.
Probab=83.97 E-value=1.9 Score=31.11 Aligned_cols=34 Identities=26% Similarity=0.399 Sum_probs=26.4
Q ss_pred HHHHHHHhcCCceEEEEEeChhHHHHHHHHHhCC
Q 022960 106 AIVQDFCAKGRVITAIIGHSKGGNAVLLYASKYN 139 (289)
Q Consensus 106 ~~i~~l~~~~~~~~~l~G~S~Gg~~a~~~a~~~p 139 (289)
-+++.|.++++..-.+.|-|.|+.++..++...+
T Consensus 15 Gvl~aL~e~gi~~d~v~GtSaGAi~aa~~a~g~~ 48 (172)
T cd07198 15 GVAKALRERGPLIDIIAGTSAGAIVAALLASGRD 48 (172)
T ss_pred HHHHHHHHcCCCCCEEEEECHHHHHHHHHHcCCC
Confidence 3455565657766799999999999999888654
No 257
>PF12242 Eno-Rase_NADH_b: NAD(P)H binding domain of trans-2-enoyl-CoA reductase; PDB: 3ZU5_A 3ZU3_A 3ZU4_A 3ZU2_A 3S8M_A.
Probab=83.41 E-value=4.1 Score=24.60 Aligned_cols=40 Identities=18% Similarity=0.201 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHhc----CCceEEEEEeChhHHHHHHHHHhC
Q 022960 99 REAEDLRAIVQDFCAK----GRVITAIIGHSKGGNAVLLYASKY 138 (289)
Q Consensus 99 ~~~~d~~~~i~~l~~~----~~~~~~l~G~S~Gg~~a~~~a~~~ 138 (289)
-....+.+.+++.+.+ +.+++.++|-|-|=.+|.+.++.+
T Consensus 18 GC~~~V~~qI~yvk~~~~~~GpK~VLViGaStGyGLAsRIa~aF 61 (78)
T PF12242_consen 18 GCARNVENQIEYVKSQGKINGPKKVLVIGASTGYGLASRIAAAF 61 (78)
T ss_dssp HHHHHHHHHHHHHHHC---TS-SEEEEES-SSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCCCCCceEEEEecCCcccHHHHHHHHh
Confidence 3356677777777664 668999999999999998887765
No 258
>KOG2385 consensus Uncharacterized conserved protein [Function unknown]
Probab=83.04 E-value=4.1 Score=34.54 Aligned_cols=42 Identities=19% Similarity=0.241 Sum_probs=31.3
Q ss_pred CCceEEEEEeChhHHHHHHHHHh---CCC---ccEEEEeccCCccccc
Q 022960 115 GRVITAIIGHSKGGNAVLLYASK---YND---ISIVINISGRFNLKRG 156 (289)
Q Consensus 115 ~~~~~~l~G~S~Gg~~a~~~a~~---~p~---v~~~v~~~~~~~~~~~ 156 (289)
+..+|.|||+|+|+.+....+.. ..+ |..+++++.+......
T Consensus 445 G~RPVTLVGFSLGARvIf~CL~~Lakkke~~iIEnViL~GaPv~~k~~ 492 (633)
T KOG2385|consen 445 GNRPVTLVGFSLGARVIFECLLELAKKKEVGIIENVILFGAPVPTKAK 492 (633)
T ss_pred CCCceeEeeeccchHHHHHHHHHHhhcccccceeeeeeccCCccCCHH
Confidence 77899999999999987755442 222 7889999887665543
No 259
>cd07225 Pat_PNPLA6_PNPLA7 Patatin-like phospholipase domain containing protein 6 and protein 7. Patatin-like phospholipase domain containing protein 6 (PNPLA6) and protein 7 (PNPLA7) are 60% identical to each other. PNPLA6 is commonly known as Neuropathy Target Esterase (NTE). NTE has at least two functional domains: the N-terminal domain putatively regulatory domain and the C-terminal catalytic domain which shows esterase activity. NTE shows phospholipase activity for lysophosphatidylcholine (LPC) and phosphatidylcholine (PC). Exposure of NTE to organophosphates leads to organophosphate-induced delayed neurotoxicity (OPIDN). OPIDN is a progressive neurological condition that is characterized by weakness, paralysis, pain, and paresthesia. PNPLA7 is an insulin-regulated phospholipase that is homologous to Neuropathy Target Esterase (NTE or PNPLA6) and is also known as NTE-related esterase (NRE). Human NRE is predominantly expressed in prostate, white adipose, and pancreatic tissue. NRE
Probab=82.15 E-value=2.2 Score=34.01 Aligned_cols=33 Identities=21% Similarity=0.292 Sum_probs=26.1
Q ss_pred HHHHHHHhcCCceEEEEEeChhHHHHHHHHHhC
Q 022960 106 AIVQDFCAKGRVITAIIGHSKGGNAVLLYASKY 138 (289)
Q Consensus 106 ~~i~~l~~~~~~~~~l~G~S~Gg~~a~~~a~~~ 138 (289)
-+++.|.+.++..-.++|.|+|+.++..++...
T Consensus 32 GvL~aLee~gi~~d~v~GtSaGAi~ga~ya~g~ 64 (306)
T cd07225 32 GVIKALEEAGIPVDMVGGTSIGAFIGALYAEER 64 (306)
T ss_pred HHHHHHHHcCCCCCEEEEECHHHHHHHHHHcCC
Confidence 445666666776669999999999999998764
No 260
>cd07207 Pat_ExoU_VipD_like ExoU and VipD-like proteins; homologus to patatin, cPLA2, and iPLA2. ExoU, a 74-kDa enzyme, is a potent virulence factor of Pseudomonas aeruginosa. One of the pathogenic mechanisms of P. aeruginosa is to induce cytotoxicity by the injection of effector proteins (e.g. ExoU) using the type III secretion (T3S) system. ExoU is homologus to patatin and also has the conserved catalytic residues of mammalian calcium-independent (iPLA2) and cytosolic (cPLA2) PLA2. In vitro, ExoU cytotoxity is blocked by the inhibitor of cytosolic and Ca2-independent phospholipase A2 (cPLA2 and iPLA2) enzymes, suggesting that phospholipase A2 inhibitors may represent a novel mode of treatment for acute P. aeruginosa infections. ExoU requires eukaryotic superoxide dismutase as a cofactor and cleaves phosphatidylcholine and phosphatidylethanolamine in vitro. VipD, a 69-kDa cytosolic protein, belongs to the members of Legionella pneumophila family and is homologus to ExoU from Pseudomona
Probab=81.93 E-value=2.5 Score=31.09 Aligned_cols=33 Identities=21% Similarity=0.303 Sum_probs=25.6
Q ss_pred HHHHHHHhcCCceEEEEEeChhHHHHHHHHHhC
Q 022960 106 AIVQDFCAKGRVITAIIGHSKGGNAVLLYASKY 138 (289)
Q Consensus 106 ~~i~~l~~~~~~~~~l~G~S~Gg~~a~~~a~~~ 138 (289)
.+++.|.+.+...-.++|.|.||.+|..++...
T Consensus 16 Gvl~~L~e~~~~~d~i~GtSaGai~aa~~a~g~ 48 (194)
T cd07207 16 GALKALEEAGILKKRVAGTSAGAITAALLALGY 48 (194)
T ss_pred HHHHHHHHcCCCcceEEEECHHHHHHHHHHcCC
Confidence 455566555666669999999999999988754
No 261
>PRK10279 hypothetical protein; Provisional
Probab=81.84 E-value=2.2 Score=33.92 Aligned_cols=33 Identities=21% Similarity=0.252 Sum_probs=26.3
Q ss_pred HHHHHHHhcCCceEEEEEeChhHHHHHHHHHhC
Q 022960 106 AIVQDFCAKGRVITAIIGHSKGGNAVLLYASKY 138 (289)
Q Consensus 106 ~~i~~l~~~~~~~~~l~G~S~Gg~~a~~~a~~~ 138 (289)
-+++.|.+.++..-.++|.|+|+.++..+|...
T Consensus 22 GVL~aL~E~gi~~d~i~GtS~GAlvga~yA~g~ 54 (300)
T PRK10279 22 GVINALKKVGIEIDIVAGCSIGSLVGAAYACDR 54 (300)
T ss_pred HHHHHHHHcCCCcCEEEEEcHHHHHHHHHHcCC
Confidence 345666666777779999999999999998754
No 262
>cd03818 GT1_ExpC_like This family is most closely related to the GT1 family of glycosyltransferases. ExpC in Rhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucan (exopolysaccharide II).
Probab=81.26 E-value=25 Score=29.23 Aligned_cols=36 Identities=17% Similarity=0.199 Sum_probs=28.3
Q ss_pred EEEEcCCCCCCCCcchHHHHHHHHHcCccEEEEccccCCC
Q 022960 48 VIVCHGFQSTKDRIPMVNLAAALEREGISAFRFDFSGNGE 87 (289)
Q Consensus 48 iv~~hG~~~~~~~~~~~~~~~~l~~~G~~v~~~d~~G~G~ 87 (289)
|+|+|...-.. |+.+++.|.++|+.|..+-..+.+.
T Consensus 2 il~~~~~~p~~----~~~la~~L~~~G~~v~~~~~~~~~~ 37 (396)
T cd03818 2 ILFVHQNFPGQ----FRHLAPALAAQGHEVVFLTEPNAAP 37 (396)
T ss_pred EEEECCCCchh----HHHHHHHHHHCCCEEEEEecCCCCC
Confidence 78888766543 7899999999999998876665544
No 263
>cd07210 Pat_hypo_W_succinogenes_WS1459_like Hypothetical patatin similar to WS1459 of Wolinella succinogenes. Patatin-like phospholipase. This family predominantly consists of bacterial patatin glycoproteins. The patatin protein accounts for up to 40% of the total soluble protein in potato tubers. Patatin is a storage protein, but it also has the enzymatic activity of a lipid acyl hydrolase, catalyzing the cleavage of fatty acids from membrane lipids. Members of this family have also been found in vertebrates.
Probab=80.92 E-value=3.1 Score=31.41 Aligned_cols=33 Identities=27% Similarity=0.248 Sum_probs=24.9
Q ss_pred HHHHHHHhcCCceEEEEEeChhHHHHHHHHHhC
Q 022960 106 AIVQDFCAKGRVITAIIGHSKGGNAVLLYASKY 138 (289)
Q Consensus 106 ~~i~~l~~~~~~~~~l~G~S~Gg~~a~~~a~~~ 138 (289)
-+++.|.+.+...-.++|.|.|+.++..++...
T Consensus 17 GvL~aL~e~gi~~~~i~GtSaGAi~aa~~a~g~ 49 (221)
T cd07210 17 GFLAALLEMGLEPSAISGTSAGALVGGLFASGI 49 (221)
T ss_pred HHHHHHHHcCCCceEEEEeCHHHHHHHHHHcCC
Confidence 345555555666668999999999999988754
No 264
>COG3340 PepE Peptidase E [Amino acid transport and metabolism]
Probab=79.90 E-value=6 Score=29.41 Aligned_cols=41 Identities=12% Similarity=0.226 Sum_probs=31.3
Q ss_pred CCCcEEEEEcCCCCCCCC-cchHHHHHHHHHcCccEEEEccc
Q 022960 43 GSKQLVIVCHGFQSTKDR-IPMVNLAAALEREGISAFRFDFS 83 (289)
Q Consensus 43 ~~~~~iv~~hG~~~~~~~-~~~~~~~~~l~~~G~~v~~~d~~ 83 (289)
+.++.|.|++-.+.+.+. .+.....+.|.+.|+.+..+++-
T Consensus 30 g~~~~i~FIPtAs~~~~~~~Yv~k~~~~l~~lg~~v~~L~l~ 71 (224)
T COG3340 30 GKRKTIAFIPTASVDSEDDFYVEKVRNALAKLGLEVSELHLS 71 (224)
T ss_pred CCCceEEEEecCccccchHHHHHHHHHHHHHcCCeeeeeecc
Confidence 347799999988887753 24566778889999998888764
No 265
>cd07227 Pat_Fungal_NTE1 Fungal patatin-like phospholipase domain containing protein 6. These are fungal Neuropathy Target Esterase (NTE), commonly referred to as NTE1. Patatin-like phospholipase. NTE has at least two functional domains: the N-terminal domain putatively regulatory domain and the C-terminal catalytic domain which shows esterase activity. NTE shows phospholipase activity for lysophosphatidylcholine (LPC) and phosphatidylcholine (PC). Exposure of NTE to organophosphates leads to organophosphate-induced delayed neurotoxicity (OPIDN). OPIDN is a progressive neurological condition that is characterized by weakness, paralysis, pain, and paresthesia. This family includes NTE1 from fungi.
Probab=78.84 E-value=3.3 Score=32.32 Aligned_cols=33 Identities=36% Similarity=0.318 Sum_probs=25.5
Q ss_pred HHHHHHHhcCCceEEEEEeChhHHHHHHHHHhC
Q 022960 106 AIVQDFCAKGRVITAIIGHSKGGNAVLLYASKY 138 (289)
Q Consensus 106 ~~i~~l~~~~~~~~~l~G~S~Gg~~a~~~a~~~ 138 (289)
-+++.|.+.++.--.+.|.|+|+.++..+|...
T Consensus 27 GVL~aLeE~gi~~d~v~GtSaGAiiga~ya~g~ 59 (269)
T cd07227 27 GILQALEEAGIPIDAIGGTSIGSFVGGLYAREA 59 (269)
T ss_pred HHHHHHHHcCCCccEEEEECHHHHHHHHHHcCC
Confidence 345555555776569999999999999998763
No 266
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=78.81 E-value=20 Score=26.52 Aligned_cols=70 Identities=14% Similarity=0.205 Sum_probs=42.3
Q ss_pred HHHHHHHcCccEEEEccccCCCCCCCccccchHHHHHHHHHHHHHHHhcCCceEEEEEeChhHHHHHHHHHhC-C--Ccc
Q 022960 66 LAAALEREGISAFRFDFSGNGESEGSFLYGNYRREAEDLRAIVQDFCAKGRVITAIIGHSKGGNAVLLYASKY-N--DIS 142 (289)
Q Consensus 66 ~~~~l~~~G~~v~~~d~~G~G~s~~~~~~~~~~~~~~d~~~~i~~l~~~~~~~~~l~G~S~Gg~~a~~~a~~~-p--~v~ 142 (289)
..+.+.++++.++.+|-+|....+ ....+++..+++.+ ....++++=-+..+.-.+..+..+ . .+.
T Consensus 75 ~l~~~~~~~~D~vlIDT~Gr~~~d--------~~~~~el~~~~~~~---~~~~~~LVlsa~~~~~~~~~~~~~~~~~~~~ 143 (196)
T PF00448_consen 75 ALEKFRKKGYDLVLIDTAGRSPRD--------EELLEELKKLLEAL---NPDEVHLVLSATMGQEDLEQALAFYEAFGID 143 (196)
T ss_dssp HHHHHHHTTSSEEEEEE-SSSSTH--------HHHHHHHHHHHHHH---SSSEEEEEEEGGGGGHHHHHHHHHHHHSSTC
T ss_pred HHHHHhhcCCCEEEEecCCcchhh--------HHHHHHHHHHhhhc---CCccceEEEecccChHHHHHHHHHhhcccCc
Confidence 444556668999999999754322 34456667777666 455566666655555555444433 2 277
Q ss_pred EEEE
Q 022960 143 IVIN 146 (289)
Q Consensus 143 ~~v~ 146 (289)
++|+
T Consensus 144 ~lIl 147 (196)
T PF00448_consen 144 GLIL 147 (196)
T ss_dssp EEEE
T ss_pred eEEE
Confidence 7775
No 267
>cd07228 Pat_NTE_like_bacteria Bacterial patatin-like phospholipase domain containing protein 6. Bacterial patatin-like phospholipase domain containing protein 6. PNPLA6 is commonly known as Neuropathy Target Esterase (NTE). NTE has at least two functional domains: the N-terminal domain putatively regulatory domain and the C-terminal catalytic domain which shows esterase activity. NTE shows phospholipase activity for lysophosphatidylcholine (LPC) and phosphatidylcholine (PC). Exposure of NTE to organophosphates leads to organophosphate-induced delayed neurotoxicity (OPIDN). OPIDN is a progressive neurological condition that is characterized by weakness, paralysis, pain, and paresthesia. This group includes YCHK and rssA from Escherichia coli as well as Ylbk from Bacillus amyloliquefaciens.
Probab=78.18 E-value=4.9 Score=29.03 Aligned_cols=33 Identities=27% Similarity=0.307 Sum_probs=25.0
Q ss_pred HHHHHHhcCCceEEEEEeChhHHHHHHHHHhCC
Q 022960 107 IVQDFCAKGRVITAIIGHSKGGNAVLLYASKYN 139 (289)
Q Consensus 107 ~i~~l~~~~~~~~~l~G~S~Gg~~a~~~a~~~p 139 (289)
+++.+.+.+...-.++|.|.|+.+|..++...+
T Consensus 18 vl~~L~e~g~~~d~i~GtSaGAi~aa~~a~g~~ 50 (175)
T cd07228 18 VLRALEEEGIEIDIIAGSSIGALVGALYAAGHL 50 (175)
T ss_pred HHHHHHHCCCCeeEEEEeCHHHHHHHHHHcCCC
Confidence 455555556655699999999999999887654
No 268
>PF00698 Acyl_transf_1: Acyl transferase domain; InterPro: IPR014043 Enzymes like bacterial malonyl CoA-acly carrier protein transacylase (2.3.1.39 from EC) and eukaryotic fatty acid synthase (2.3.1.85 from EC) that are involved in fatty acid biosynthesis belong to this group. Also included are the polyketide synthases 6-methylsalicylic acid synthase (2.3.1 from EC), a multifunctional enzyme that involved in the biosynthesis of patulin and conidial green pigment synthase (2.3.1 from EC).; PDB: 3HHD_C 2JFD_D 2JFK_A 3G87_A 3IM9_A 2QO3_B 3IM8_A 3EZO_A 2QJ3_A 2QC3_A ....
Probab=78.16 E-value=2 Score=34.58 Aligned_cols=31 Identities=35% Similarity=0.384 Sum_probs=23.6
Q ss_pred HHHHHHHhcCCceEEEEEeChhHHHHHHHHH
Q 022960 106 AIVQDFCAKGRVITAIIGHSKGGNAVLLYAS 136 (289)
Q Consensus 106 ~~i~~l~~~~~~~~~l~G~S~Gg~~a~~~a~ 136 (289)
++.+.++..++.+-.++|||+|=+.|+.++.
T Consensus 73 al~~~l~~~Gi~P~~v~GhSlGE~aA~~aaG 103 (318)
T PF00698_consen 73 ALARLLRSWGIKPDAVIGHSLGEYAALVAAG 103 (318)
T ss_dssp HHHHHHHHTTHCESEEEESTTHHHHHHHHTT
T ss_pred hhhhhhcccccccceeeccchhhHHHHHHCC
Confidence 3445566668888899999999988886543
No 269
>smart00827 PKS_AT Acyl transferase domain in polyketide synthase (PKS) enzymes.
Probab=77.81 E-value=3.6 Score=32.64 Aligned_cols=31 Identities=29% Similarity=0.314 Sum_probs=23.5
Q ss_pred HHHHHHHhcCCceEEEEEeChhHHHHHHHHH
Q 022960 106 AIVQDFCAKGRVITAIIGHSKGGNAVLLYAS 136 (289)
Q Consensus 106 ~~i~~l~~~~~~~~~l~G~S~Gg~~a~~~a~ 136 (289)
.+.+.+++.++.+-.++|||+|-+.|+.++.
T Consensus 71 a~~~~l~~~Gi~p~~~~GhSlGE~aA~~~ag 101 (298)
T smart00827 71 ALARLWRSWGVRPDAVVGHSLGEIAAAYVAG 101 (298)
T ss_pred HHHHHHHHcCCcccEEEecCHHHHHHHHHhC
Confidence 3445555558888899999999999887654
No 270
>COG1752 RssA Predicted esterase of the alpha-beta hydrolase superfamily [General function prediction only]
Probab=77.09 E-value=3.8 Score=32.77 Aligned_cols=33 Identities=27% Similarity=0.408 Sum_probs=26.4
Q ss_pred HHHHHHHhcCCceEEEEEeChhHHHHHHHHHhC
Q 022960 106 AIVQDFCAKGRVITAIIGHSKGGNAVLLYASKY 138 (289)
Q Consensus 106 ~~i~~l~~~~~~~~~l~G~S~Gg~~a~~~a~~~ 138 (289)
-+++.|.+.++..-.+.|.|+|+.++..+|...
T Consensus 28 GVl~aL~e~gi~~~~iaGtS~GAiva~l~A~g~ 60 (306)
T COG1752 28 GVLKALEEAGIPIDVIAGTSAGAIVAALYAAGM 60 (306)
T ss_pred HHHHHHHHcCCCccEEEecCHHHHHHHHHHcCC
Confidence 345555556888889999999999999998854
No 271
>cd07205 Pat_PNPLA6_PNPLA7_NTE1_like Patatin-like phospholipase domain containing protein 6, protein 7, and fungal NTE1. Patatin-like phospholipase domain containing protein 6 (PNPLA6) and protein 7 (PNPLA7) are included in this family. PNPLA6 is commonly known as Neuropathy Target Esterase (NTE). NTE has at least two functional domains: the N-terminal domain putatively regulatory domain and the C-terminal catalytic domain which shows esterase activity. NTE shows phospholipase activity for lysophosphatidylcholine (LPC) and phosphatidylcholine (PC). Exposure of NTE to organophosphates leads to organophosphate-induced delayed neurotoxicity (OPIDN). OPIDN is a progressive neurological condition that is characterized by weakness, paralysis, pain, and paresthesia. PNPLA7 is an insulin-regulated phospholipase that is homologus to Neuropathy Target Esterase (NTE or PNPLA6) and is also known as NTE-related esterase (NRE). Human NRE is predominantly expressed in prostate, white adipose, and panc
Probab=76.85 E-value=5.6 Score=28.68 Aligned_cols=34 Identities=26% Similarity=0.390 Sum_probs=25.1
Q ss_pred HHHHHHHHhcCCceEEEEEeChhHHHHHHHHHhC
Q 022960 105 RAIVQDFCAKGRVITAIIGHSKGGNAVLLYASKY 138 (289)
Q Consensus 105 ~~~i~~l~~~~~~~~~l~G~S~Gg~~a~~~a~~~ 138 (289)
.-+++.|.+.+...-.++|.|.|+.+|..++...
T Consensus 16 ~Gvl~~L~~~~~~~d~i~GtSaGal~a~~~a~g~ 49 (175)
T cd07205 16 IGVLKALEEAGIPIDIVSGTSAGAIVGALYAAGY 49 (175)
T ss_pred HHHHHHHHHcCCCeeEEEEECHHHHHHHHHHcCC
Confidence 3445555555655569999999999999988654
No 272
>TIGR03131 malonate_mdcH malonate decarboxylase, epsilon subunit. Members of this protein family are the epsilon subunit of malonate decarboxylase. This subunit has malonyl-CoA/dephospho-CoA acyltransferase activity. Malonate decarboxylase may be a soluble enzyme, or linked to membrane subunits and active as a sodium pump. The epsilon subunit is closely related to the malonyl CoA-acyl carrier protein (ACP) transacylase family described by TIGR00128, but acts on an ACP subunit of malonate decarboxylase that has an unusual coenzyme A derivative as its prothetic group.
Probab=76.26 E-value=4.3 Score=32.23 Aligned_cols=31 Identities=23% Similarity=0.081 Sum_probs=23.3
Q ss_pred HHHHHHhcCCceEEEEEeChhHHHHHHHHHh
Q 022960 107 IVQDFCAKGRVITAIIGHSKGGNAVLLYASK 137 (289)
Q Consensus 107 ~i~~l~~~~~~~~~l~G~S~Gg~~a~~~a~~ 137 (289)
+.+.+++.+..+..++|||+|-+.|+.++..
T Consensus 66 l~~~l~~~g~~P~~v~GhS~GE~aAa~~aG~ 96 (295)
T TIGR03131 66 AWRALLALLPRPSAVAGYSVGEYAAAVVAGV 96 (295)
T ss_pred HHHHHHhcCCCCcEEeecCHHHHHHHHHhCC
Confidence 3444555578888999999999888876643
No 273
>cd07209 Pat_hypo_Ecoli_Z1214_like Hypothetical patatin similar to Z1214 protein of Escherichia coli. Patatin-like phospholipase similar to Z1214 protein of Escherichia coli. This family predominantly consists of bacterial patatin glycoproteins and some representatives from eukaryotes and archaea. The patatin protein accounts for up to 40% of the total soluble protein in potato tubers. Patatin is a storage protein, but it also has the enzymatic activity of a lipid acyl hydrolase, catalyzing the cleavage of fatty acids from membrane lipids. Members of this family have also been found in vertebrates.
Probab=76.22 E-value=4.4 Score=30.47 Aligned_cols=33 Identities=21% Similarity=0.169 Sum_probs=25.7
Q ss_pred HHHHHHhcCCceEEEEEeChhHHHHHHHHHhCC
Q 022960 107 IVQDFCAKGRVITAIIGHSKGGNAVLLYASKYN 139 (289)
Q Consensus 107 ~i~~l~~~~~~~~~l~G~S~Gg~~a~~~a~~~p 139 (289)
+++.|.+.+...-.+.|.|.|+.+|..++...+
T Consensus 16 vl~aL~e~g~~~d~i~GtS~GAl~aa~~a~~~~ 48 (215)
T cd07209 16 VLKALAEAGIEPDIISGTSIGAINGALIAGGDP 48 (215)
T ss_pred HHHHHHHcCCCCCEEEEECHHHHHHHHHHcCCc
Confidence 455555556655599999999999999988764
No 274
>cd01714 ETF_beta The electron transfer flavoprotein (ETF) serves as a specific electron acceptor for various mitochondrial dehydrogenases. ETF transfers electrons to the main respiratory chain via ETF-ubiquinone oxidoreductase. ETF is an heterodimer that consists of an alpha and a beta subunit which binds one molecule of FAD per dimer . A similar system also exists in some bacteria. The homologous pair of proteins (FixA/FixB) are essential for nitrogen fixation. The beta subunit protein is distantly related to and forms a heterodimer with the alpha subunit.
Probab=75.96 E-value=30 Score=25.76 Aligned_cols=71 Identities=20% Similarity=0.118 Sum_probs=44.0
Q ss_pred HHHHHHHcCc-cEEEEccccCCCCCCCccccchHHHHHHHHHHHHHHHhcCCceEEEEEeCh----hHHHHHHHHHhCCC
Q 022960 66 LAAALEREGI-SAFRFDFSGNGESEGSFLYGNYRREAEDLRAIVQDFCAKGRVITAIIGHSK----GGNAVLLYASKYND 140 (289)
Q Consensus 66 ~~~~l~~~G~-~v~~~d~~G~G~s~~~~~~~~~~~~~~d~~~~i~~l~~~~~~~~~l~G~S~----Gg~~a~~~a~~~p~ 140 (289)
..+.+...|. .|+..+.++.. .++.+.++.-+.++++.. + -.++|+|+|. |..++.++|.+..-
T Consensus 68 ~~~~l~~~G~d~V~~~~~~~~~-------~~~~e~~a~al~~~i~~~---~-p~lVL~~~t~~~~~grdlaprlAarLga 136 (202)
T cd01714 68 ALREALAMGADRAILVSDRAFA-------GADTLATAKALAAAIKKI---G-VDLILTGKQSIDGDTGQVGPLLAELLGW 136 (202)
T ss_pred HHHHHHHcCCCEEEEEeccccc-------CCChHHHHHHHHHHHHHh---C-CCEEEEcCCcccCCcCcHHHHHHHHhCC
Confidence 4445555676 57777665322 223345555555555443 4 3589999988 88999999888643
Q ss_pred --ccEEEEe
Q 022960 141 --ISIVINI 147 (289)
Q Consensus 141 --v~~~v~~ 147 (289)
+..++-+
T Consensus 137 ~lvsdv~~l 145 (202)
T cd01714 137 PQITYVSKI 145 (202)
T ss_pred CccceEEEE
Confidence 5555544
No 275
>PRK12467 peptide synthase; Provisional
Probab=75.78 E-value=12 Score=41.28 Aligned_cols=96 Identities=15% Similarity=-0.014 Sum_probs=61.0
Q ss_pred CcEEEEEcCCCCCCCCcchHHHHHHHHHcCccEEEEccccCCCCCCCccccchHHHHHHHHHHHHHHHhcCCceEEEEEe
Q 022960 45 KQLVIVCHGFQSTKDRIPMVNLAAALEREGISAFRFDFSGNGESEGSFLYGNYRREAEDLRAIVQDFCAKGRVITAIIGH 124 (289)
Q Consensus 45 ~~~iv~~hG~~~~~~~~~~~~~~~~l~~~G~~v~~~d~~G~G~s~~~~~~~~~~~~~~d~~~~i~~l~~~~~~~~~l~G~ 124 (289)
.+.+++.|...+..- .+..+...|.. +..++.+..++.-.... ...++...+....+.+.+... ..+..+.|+
T Consensus 3692 ~~~l~~~h~~~r~~~--~~~~l~~~l~~-~~~~~~l~~~~~~~d~~--~~~~~~~~~~~y~~~~~~~~~--~~p~~l~g~ 3764 (3956)
T PRK12467 3692 FPALFCRHEGLGTVF--DYEPLAVILEG-DRHVLGLTCRHLLDDGW--QDTSLQAMAVQYADYILWQQA--KGPYGLLGW 3764 (3956)
T ss_pred ccceeeechhhcchh--hhHHHHHHhCC-CCcEEEEeccccccccC--CccchHHHHHHHHHHHHHhcc--CCCeeeeee
Confidence 356999999888773 36777777755 36788877765422211 223445555555555655533 336899999
Q ss_pred ChhHHHHHHHHHhC---CC-ccEEEEe
Q 022960 125 SKGGNAVLLYASKY---ND-ISIVINI 147 (289)
Q Consensus 125 S~Gg~~a~~~a~~~---p~-v~~~v~~ 147 (289)
|+||.++..++... .+ +..+.++
T Consensus 3765 s~g~~~a~~~~~~l~~~g~~~~~~~~~ 3791 (3956)
T PRK12467 3765 SLGGTLARLVAELLEREGESEAFLGLF 3791 (3956)
T ss_pred ecchHHHHHHHHHHHHcCCceeEEEEE
Confidence 99999998887653 23 5444444
No 276
>PRK05282 (alpha)-aspartyl dipeptidase; Validated
Probab=74.85 E-value=17 Score=27.84 Aligned_cols=40 Identities=15% Similarity=0.042 Sum_probs=28.0
Q ss_pred CCcEEEEEcCCCCCCC-CcchHHHHHHHHHcCccEEEEccc
Q 022960 44 SKQLVIVCHGFQSTKD-RIPMVNLAAALEREGISAFRFDFS 83 (289)
Q Consensus 44 ~~~~iv~~hG~~~~~~-~~~~~~~~~~l~~~G~~v~~~d~~ 83 (289)
.++.|+|++-.....+ ..+...+.+.+.+.|+.|..++..
T Consensus 30 ~~~~v~fIPtAs~~~~~~~y~~~~~~af~~lG~~v~~l~~~ 70 (233)
T PRK05282 30 GRRKAVFIPYAGVTQSWDDYTAKVAEALAPLGIEVTGIHRV 70 (233)
T ss_pred CCCeEEEECCCCCCCCHHHHHHHHHHHHHHCCCEEEEeccc
Confidence 4678999998774422 123455777788889998888765
No 277
>COG3007 Uncharacterized paraquat-inducible protein B [Function unknown]
Probab=74.58 E-value=22 Score=28.07 Aligned_cols=68 Identities=15% Similarity=0.111 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHhc-----CCceEEEEEeChhHHHHHHHHHhCCC---ccEEEEeccCCcccccccccccchhHhhh
Q 022960 102 EDLRAIVQDFCAK-----GRVITAIIGHSKGGNAVLLYASKYND---ISIVINISGRFNLKRGIEGRLGLGYLQRI 169 (289)
Q Consensus 102 ~d~~~~i~~l~~~-----~~~~~~l~G~S~Gg~~a~~~a~~~p~---v~~~v~~~~~~~~~~~~~~~~~~~~~~~~ 169 (289)
..+.+-|++.+.. +++++.++|-|-|=.+|.+.++.+.. --++..--|..+.......+....++..+
T Consensus 22 ~nV~~QI~y~k~~gp~~ngPKkVLviGaSsGyGLa~RIsaaFG~gAdTiGVffE~pgte~~~gtagwyn~~~f~~~ 97 (398)
T COG3007 22 ANVLQQIDYVKAAGPIKNGPKKVLVIGASSGYGLAARISAAFGPGADTIGVFFERPGTERKPGTAGWYNNAAFKKF 97 (398)
T ss_pred HHHHHHHHHHHhcCCccCCCceEEEEecCCcccHHHHHHHHhCCCCceeeEEeecCCccCCCcchhhhHHHHHHHH
Confidence 4556667777665 67899999999999999998877643 33555445554444444444444443333
No 278
>cd07224 Pat_like Patatin-like phospholipase. Patatin-like phospholipase. This family consists of various patatin glycoproteins from plants. The patatin protein accounts for up to 40% of the total soluble protein in potato tubers. Patatin is a storage protein, but it also has the enzymatic activity of lipid acyl hydrolase, catalysing the cleavage of fatty acids from membrane lipids. Members of this family have been found also in vertebrates.
Probab=73.39 E-value=6 Score=30.20 Aligned_cols=34 Identities=24% Similarity=0.275 Sum_probs=25.3
Q ss_pred HHHHHHHhcCCc--eEEEEEeChhHHHHHHHHHhCC
Q 022960 106 AIVQDFCAKGRV--ITAIIGHSKGGNAVLLYASKYN 139 (289)
Q Consensus 106 ~~i~~l~~~~~~--~~~l~G~S~Gg~~a~~~a~~~p 139 (289)
-+++.|.++++. .-.++|-|.|+.++..++...+
T Consensus 16 GVl~~L~e~gi~~~~~~i~G~SAGAl~aa~~asg~~ 51 (233)
T cd07224 16 GVLSLLIEAGVINETTPLAGASAGSLAAACSASGLS 51 (233)
T ss_pred HHHHHHHHcCCCCCCCEEEEEcHHHHHHHHHHcCCC
Confidence 345666666654 3489999999999999987653
No 279
>COG3494 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=72.62 E-value=18 Score=27.76 Aligned_cols=59 Identities=14% Similarity=0.292 Sum_probs=43.0
Q ss_pred HHHHHHHHHcCccEEEEccccCCCCCCCccccchH-HHHHHHHHHHHHHHhcCCceEEEEEe
Q 022960 64 VNLAAALEREGISAFRFDFSGNGESEGSFLYGNYR-REAEDLRAIVQDFCAKGRVITAIIGH 124 (289)
Q Consensus 64 ~~~~~~l~~~G~~v~~~d~~G~G~s~~~~~~~~~~-~~~~d~~~~i~~l~~~~~~~~~l~G~ 124 (289)
..++....++|+.++.+-++|.-... ...+.+. --+.++-+++++++.++.+++++.|-
T Consensus 18 ~~va~~a~~~G~~~~ii~l~~eaD~~--~~~~e~~~~~iG~vg~lik~l~~~~v~~vVl~G~ 77 (279)
T COG3494 18 LEVAENARNQGYAPFIIGLRGEADPE--LKEFEYKEVSIGEVGKLIKLLKTEGVDRVVLAGG 77 (279)
T ss_pred HHHHHHHHhCCCCcEEEEecCccchh--hhcCCCeEEeHHHHHHHHHHHHHcCCcEEEEecc
Confidence 56888889999999999998654322 1112222 22578899999999999999998874
No 280
>TIGR00128 fabD malonyl CoA-acyl carrier protein transacylase. The seed alignment for this family of proteins contains a single member each from a number of bacterial species but also an additional pair of closely related, uncharacterized proteins from B. subtilis, one of which has a long C-terminal extension.
Probab=72.38 E-value=5.5 Score=31.44 Aligned_cols=29 Identities=24% Similarity=0.233 Sum_probs=21.9
Q ss_pred HHHHhcC-CceEEEEEeChhHHHHHHHHHh
Q 022960 109 QDFCAKG-RVITAIIGHSKGGNAVLLYASK 137 (289)
Q Consensus 109 ~~l~~~~-~~~~~l~G~S~Gg~~a~~~a~~ 137 (289)
+.++..+ +.+-.++|||+|=+.|+.++..
T Consensus 74 ~~l~~~g~i~p~~v~GhS~GE~aAa~~aG~ 103 (290)
T TIGR00128 74 LKLKEQGGLKPDFAAGHSLGEYSALVAAGA 103 (290)
T ss_pred HHHHHcCCCCCCEEeecCHHHHHHHHHhCC
Confidence 3344445 8888999999999988876644
No 281
>cd07230 Pat_TGL4-5_like Triacylglycerol lipase 4 and 5. TGL4 and TGL5 are triacylglycerol lipases that are involved in triacylglycerol mobilization and degradation; they are found in lipid particles. Tgl4 is a functional ortholog of mammalian adipose TG lipase (ATGL) and is phosphorylated and activated by cyclin-dependent kinase 1 (Cdk1/Cdc28). TGL4 is 30% homologus to TGL3, whereas TGL5 is 26% homologus to TGL3. This family includes TGL4 (STC1) and TGL5 (STC2) from Saccharomyces cerevisiae.
Probab=72.16 E-value=4.2 Score=34.16 Aligned_cols=36 Identities=11% Similarity=0.218 Sum_probs=27.8
Q ss_pred HHHHHHHHhcCCceEEEEEeChhHHHHHHHHHhCCC
Q 022960 105 RAIVQDFCAKGRVITAIIGHSKGGNAVLLYASKYND 140 (289)
Q Consensus 105 ~~~i~~l~~~~~~~~~l~G~S~Gg~~a~~~a~~~p~ 140 (289)
.-+++.|.++++.+-++.|.|.|+.+|..++...++
T Consensus 89 iGVLkaL~E~gl~p~vIsGTSaGAivAal~as~~~e 124 (421)
T cd07230 89 IGVLKALFEANLLPRIISGSSAGSIVAAILCTHTDE 124 (421)
T ss_pred HHHHHHHHHcCCCCCEEEEECHHHHHHHHHHcCCHH
Confidence 345666666677667999999999999998886543
No 282
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=71.85 E-value=19 Score=27.72 Aligned_cols=59 Identities=10% Similarity=0.149 Sum_probs=37.4
Q ss_pred EEEEEcCCCCCCCCcchHHHHHHHHHcCccEEEEccccCCCCCCCccccchHHHHHHHHHHHHHHHhcCCceEEEE
Q 022960 47 LVIVCHGFQSTKDRIPMVNLAAALEREGISAFRFDFSGNGESEGSFLYGNYRREAEDLRAIVQDFCAKGRVITAII 122 (289)
Q Consensus 47 ~iv~~hG~~~~~~~~~~~~~~~~l~~~G~~v~~~d~~G~G~s~~~~~~~~~~~~~~d~~~~i~~l~~~~~~~~~l~ 122 (289)
.=++++|..|++.++..+.+...+...|.+++-++ .....++..+++.++..+ .+++|+
T Consensus 53 nnvLL~G~rGtGKSSlVkall~~y~~~GLRlIev~----------------k~~L~~l~~l~~~l~~~~-~kFIlf 111 (249)
T PF05673_consen 53 NNVLLWGARGTGKSSLVKALLNEYADQGLRLIEVS----------------KEDLGDLPELLDLLRDRP-YKFILF 111 (249)
T ss_pred cceEEecCCCCCHHHHHHHHHHHHhhcCceEEEEC----------------HHHhccHHHHHHHHhcCC-CCEEEE
Confidence 34566787777766666777777777787777654 233456677777765443 345554
No 283
>PF00326 Peptidase_S9: Prolyl oligopeptidase family This family belongs to family S9 of the peptidase classification.; InterPro: IPR001375 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain covers the active site serine of the serine peptidases belonging to MEROPS peptidase family S9 (prolyl oligopeptidase family, clan SC). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Examples of protein families containing this domain are: Prolyl endopeptidase (3.4.21.26 from EC) (PE) (also called post-proline cleaving enzyme). PE is an enzyme that cleaves peptide bonds on the C-terminal side of prolyl residues. The sequence of PE has been obtained from a mammalian species (pig) and from bacteria (Flavobacterium meningosepticum and Aeromonas hydrophila); there is a high degree of sequence conservation between these sequences. Escherichia coli protease II (3.4.21.83 from EC) (oligopeptidase B) (gene prtB) which cleaves peptide bonds on the C-terminal side of lysyl and argininyl residues. Dipeptidyl peptidase IV (3.4.14.5 from EC) (DPP IV). DPP IV is an enzyme that removes N-terminal dipeptides sequentially from polypeptides having unsubstituted N-termini provided that the penultimate residue is proline. Saccharomyces cerevisiae (Baker's yeast) vacuolar dipeptidyl aminopeptidases A and B (DPAP A and DPAP B), encoded by the STE13 and DAP2 genes respectively. DPAP A is responsible for the proteolytic maturation of the alpha-factor precursor. Acylamino-acid-releasing enzyme (3.4.19.1 from EC) (acyl-peptide hydrolase). This enzyme catalyses the hydrolysis of the amino-terminal peptide bond of an N-acetylated protein to generate a N-acetylated amino acid and a protein with a free amino-terminus. These proteins belong to MEROPS peptidase families S9A, S9B and S9C.; GO: 0008236 serine-type peptidase activity, 0006508 proteolysis; PDB: 2AJ8_D 1ORV_D 2AJB_C 2BUC_D 1ORW_D 2AJC_D 2AJD_C 2BUA_A 2HU8_B 3O4J_B ....
Probab=71.33 E-value=28 Score=25.87 Aligned_cols=44 Identities=25% Similarity=0.340 Sum_probs=31.0
Q ss_pred CCcEEEEEcCCCCCCCC-cchHHHHHHHHHcCccEEEEccccCCC
Q 022960 44 SKQLVIVCHGFQSTKDR-IPMVNLAAALEREGISAFRFDFSGNGE 87 (289)
Q Consensus 44 ~~~~iv~~hG~~~~~~~-~~~~~~~~~l~~~G~~v~~~d~~G~G~ 87 (289)
..++++++||.....-. ..-..+.+.|.+.|..+...-+++.|.
T Consensus 143 ~~~P~li~hG~~D~~Vp~~~s~~~~~~L~~~g~~~~~~~~p~~gH 187 (213)
T PF00326_consen 143 IKPPVLIIHGENDPRVPPSQSLRLYNALRKAGKPVELLIFPGEGH 187 (213)
T ss_dssp GGSEEEEEEETTBSSSTTHHHHHHHHHHHHTTSSEEEEEETT-SS
T ss_pred CCCCEEEEccCCCCccCHHHHHHHHHHHHhcCCCEEEEEcCcCCC
Confidence 46899999998765421 124567888888898887777776554
No 284
>PF08484 Methyltransf_14: C-methyltransferase C-terminal domain; InterPro: IPR013691 This domain is found in bacterial C-methyltransferase proteins, often together with other methyltransferase domains such as IPR013216 from INTERPRO or IPR013217 from INTERPRO. ; PDB: 4E2X_A 3NDJ_A 3NDI_A 4E32_A 4E33_A 4E31_A 4E2Y_A 4E2W_A 4E2Z_A 4E30_A.
Probab=70.56 E-value=23 Score=25.26 Aligned_cols=48 Identities=27% Similarity=0.323 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHhcCCceEEEEEeChhHHHHHHHHHhCCC-ccEEEEecc
Q 022960 101 AEDLRAIVQDFCAKGRVITAIIGHSKGGNAVLLYASKYND-ISIVINISG 149 (289)
Q Consensus 101 ~~d~~~~i~~l~~~~~~~~~l~G~S~Gg~~a~~~a~~~p~-v~~~v~~~~ 149 (289)
.+++.++++.++.. ..+|+++|-|..|...+.++...++ +..++=.+|
T Consensus 54 ~~~l~~~L~~~~~~-gk~I~~yGA~~kg~tlln~~g~~~~~I~~vvD~np 102 (160)
T PF08484_consen 54 KAELREFLEKLKAE-GKRIAGYGAGAKGNTLLNYFGLDNDLIDYVVDDNP 102 (160)
T ss_dssp HHHHHHHHHHHHHT-T--EEEE---SHHHHHHHHHT--TTTS--EEES-G
T ss_pred HHHHHHHHHHHHHc-CCEEEEECcchHHHHHHHHhCCCcceeEEEEeCCh
Confidence 35555666655554 4679999999999999998887777 777775554
No 285
>TIGR03709 PPK2_rel_1 polyphosphate:nucleotide phosphotransferase, PPK2 family. Members of this protein family belong to the polyphosphate kinase 2 (PPK2) family, which is not related in sequence to PPK1. While PPK1 tends to act in the biosynthesis of polyphosphate, or poly(P), members of the PPK2 family tend to use the terminal phosphate of poly(P) to regenerate ATP or GTP from the corresponding nucleoside diphosphate, or ADP from AMP as is the case with polyphosphate:AMP phosphotransferase (PAP). Members of this protein family most likely transfer the terminal phosphate between poly(P) and some nucleotide, but it is not clear which.
Probab=69.63 E-value=4.6 Score=31.40 Aligned_cols=41 Identities=12% Similarity=0.305 Sum_probs=34.5
Q ss_pred CCCcEEEEEcCCCCCCCCcchHHHHHHHHHcCccEEEEccc
Q 022960 43 GSKQLVIVCHGFQSTKDRIPMVNLAAALEREGISAFRFDFS 83 (289)
Q Consensus 43 ~~~~~iv~~hG~~~~~~~~~~~~~~~~l~~~G~~v~~~d~~ 83 (289)
+..|+||++.|+.+.+.......+...|..+|++|.++.-|
T Consensus 53 ~~~~vlIv~eG~DaAGKG~~I~~l~~~lDPRg~~V~s~~~P 93 (264)
T TIGR03709 53 GRRSLLLVLQAMDAAGKDGTIRHVMSGVNPQGCQVTSFKAP 93 (264)
T ss_pred CCCcEEEEEECCCCCCchHHHHHHHHhcCCCeeEEEeCCCC
Confidence 35699999999998876666788888888899999999766
No 286
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=69.24 E-value=44 Score=28.19 Aligned_cols=69 Identities=19% Similarity=0.206 Sum_probs=45.2
Q ss_pred HHHHHcCccEEEEccccCCCCCCCccccchHHHHHHHHHHHHHHHhcCCceEEEEEeChhHHHHHHHHHhCCC---ccEE
Q 022960 68 AALEREGISAFRFDFSGNGESEGSFLYGNYRREAEDLRAIVQDFCAKGRVITAIIGHSKGGNAVLLYASKYND---ISIV 144 (289)
Q Consensus 68 ~~l~~~G~~v~~~d~~G~G~s~~~~~~~~~~~~~~d~~~~i~~l~~~~~~~~~l~G~S~Gg~~a~~~a~~~p~---v~~~ 144 (289)
+.+.+.+|.|+.+|-.|.-.- + +.+.+.+.++-+.+ .+..+.+|=-++=|.-|...|..+.+ +.++
T Consensus 176 ~~ak~~~~DvvIvDTAGRl~i-------d-e~Lm~El~~Ik~~~---~P~E~llVvDam~GQdA~~~A~aF~e~l~itGv 244 (451)
T COG0541 176 EKAKEEGYDVVIVDTAGRLHI-------D-EELMDELKEIKEVI---NPDETLLVVDAMIGQDAVNTAKAFNEALGITGV 244 (451)
T ss_pred HHHHHcCCCEEEEeCCCcccc-------c-HHHHHHHHHHHhhc---CCCeEEEEEecccchHHHHHHHHHhhhcCCceE
Confidence 334444566666665542111 0 33344455544444 67789999999999999999988866 7888
Q ss_pred EEe
Q 022960 145 INI 147 (289)
Q Consensus 145 v~~ 147 (289)
|+-
T Consensus 245 IlT 247 (451)
T COG0541 245 ILT 247 (451)
T ss_pred EEE
Confidence 875
No 287
>cd07208 Pat_hypo_Ecoli_yjju_like Hypothetical patatin similar to yjju protein of Escherichia coli. Patatin-like phospholipase similar to yjju protein of Escherichia coli. This family predominantly consists of bacterial patatin glycoproteins, and some representatives from eukaryotes and archaea. The patatin protein accounts for up to 40% of the total soluble protein in potato tubers. Patatin is a storage protein, but it also has the enzymatic activity of a lipid acyl hydrolase, catalyzing the cleavage of fatty acids from membrane lipids. Members of this family have also been found in vertebrates.
Probab=68.92 E-value=8.5 Score=30.02 Aligned_cols=34 Identities=24% Similarity=0.330 Sum_probs=25.0
Q ss_pred HHHHHHHhcCCc-eEEEEEeChhHHHHHHHHHhCC
Q 022960 106 AIVQDFCAKGRV-ITAIIGHSKGGNAVLLYASKYN 139 (289)
Q Consensus 106 ~~i~~l~~~~~~-~~~l~G~S~Gg~~a~~~a~~~p 139 (289)
-+++.+.+.+.. -=.++|.|.|+.++..++....
T Consensus 15 Gvl~al~e~~~~~fd~i~GtSaGAi~a~~~~~g~~ 49 (266)
T cd07208 15 GVLDAFLEAGIRPFDLVIGVSAGALNAASYLSGQR 49 (266)
T ss_pred HHHHHHHHcCCCCCCEEEEECHHHHhHHHHHhCCc
Confidence 345555555554 3399999999999999887654
No 288
>TIGR03707 PPK2_P_aer polyphosphate kinase 2, PA0141 family. Members of this protein family are designated polyphosphate kinase 2 (PPK2) after the characterized protein in Pseudomonas aeruginosa. This family comprises one of three well-separated clades in the larger family described by Pfam model pfam03976. PA0141 from this family has been shown capable of operating in reverse, with GDP preferred (over ADP) as a substrate, producing GTP (or ATP) by transfer of a phosphate residue from polyphosphate. Most species with a member of this family also encode a polyphosphate kinase 1 (PPK1).
Probab=68.59 E-value=4.9 Score=30.52 Aligned_cols=40 Identities=15% Similarity=0.213 Sum_probs=34.0
Q ss_pred CCcEEEEEcCCCCCCCCcchHHHHHHHHHcCccEEEEccc
Q 022960 44 SKQLVIVCHGFQSTKDRIPMVNLAAALEREGISAFRFDFS 83 (289)
Q Consensus 44 ~~~~iv~~hG~~~~~~~~~~~~~~~~l~~~G~~v~~~d~~ 83 (289)
+.|+||++.|+.+.+.......+...|..+|+.|.++.-|
T Consensus 29 ~~~vlIv~eG~DaAGKg~~I~~l~~~lDPRg~~v~~~~~p 68 (230)
T TIGR03707 29 GARVVIVFEGRDAAGKGGTIKRITEHLNPRGARVVALPKP 68 (230)
T ss_pred CCCEEEEEeCCCCCCchHHHHHHHHhcCCCeeEEEeCCCC
Confidence 4699999999998876656788888888899999998776
No 289
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=67.50 E-value=36 Score=28.82 Aligned_cols=68 Identities=18% Similarity=0.204 Sum_probs=41.7
Q ss_pred HHHHcCccEEEEccccCCCCCCCccccchHHHHHHHHHHHHHHHhcCCceEEEEEeChhHHHHHHHHHhCCC---ccEEE
Q 022960 69 ALEREGISAFRFDFSGNGESEGSFLYGNYRREAEDLRAIVQDFCAKGRVITAIIGHSKGGNAVLLYASKYND---ISIVI 145 (289)
Q Consensus 69 ~l~~~G~~v~~~d~~G~G~s~~~~~~~~~~~~~~d~~~~i~~l~~~~~~~~~l~G~S~Gg~~a~~~a~~~p~---v~~~v 145 (289)
.+.+.+|.++.+|-+|.-... ....+.+..+.+.. .+..++++--++-|.-+...+..+.+ +.++|
T Consensus 177 ~~~~~~~DvViIDTaGr~~~d--------~~lm~El~~i~~~~---~p~e~lLVlda~~Gq~a~~~a~~F~~~~~~~g~I 245 (429)
T TIGR01425 177 KFKKENFDIIIVDTSGRHKQE--------DSLFEEMLQVAEAI---QPDNIIFVMDGSIGQAAEAQAKAFKDSVDVGSVI 245 (429)
T ss_pred HHHhCCCCEEEEECCCCCcch--------HHHHHHHHHHhhhc---CCcEEEEEeccccChhHHHHHHHHHhccCCcEEE
Confidence 344457999999999743221 23344444444433 55567888878777777666666532 67777
Q ss_pred Ee
Q 022960 146 NI 147 (289)
Q Consensus 146 ~~ 147 (289)
+-
T Consensus 246 lT 247 (429)
T TIGR01425 246 IT 247 (429)
T ss_pred EE
Confidence 53
No 290
>COG1073 Hydrolases of the alpha/beta superfamily [General function prediction only]
Probab=67.48 E-value=0.44 Score=37.41 Aligned_cols=93 Identities=16% Similarity=0.018 Sum_probs=55.2
Q ss_pred CCcEEEEEcCCCCCCCCcchHHHHHHHHHcCccEEEEccccCCCCCCCccccchHHHHHHHHHHHHHHH-hcCCceEEEE
Q 022960 44 SKQLVIVCHGFQSTKDRIPMVNLAAALEREGISAFRFDFSGNGESEGSFLYGNYRREAEDLRAIVQDFC-AKGRVITAII 122 (289)
Q Consensus 44 ~~~~iv~~hG~~~~~~~~~~~~~~~~l~~~G~~v~~~d~~G~G~s~~~~~~~~~~~~~~d~~~~i~~l~-~~~~~~~~l~ 122 (289)
.+..++..||...+... ........+...++.++..|+++++.+.+......+.....++..++.... .....++.++
T Consensus 87 ~~~~~~~~~g~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (299)
T COG1073 87 FGESGGDPRGLADSEGY-AEDFSAAVLLLLSEGVLDKDYRLLGASLGPRILAGLSLGGPSAGALLAWGPTRLDASRIVVW 165 (299)
T ss_pred ccccccccccccCcccc-ccccchhheeeeccccccHHHHHHhhhcCcceEEEEEeeccchHHHhhcchhHHHhhcccce
Confidence 34567778887554432 122233444455789999999999998755433222222223333333321 1134478999
Q ss_pred EeChhHHHHHHHHHh
Q 022960 123 GHSKGGNAVLLYASK 137 (289)
Q Consensus 123 G~S~Gg~~a~~~a~~ 137 (289)
|.|+||..++.....
T Consensus 166 g~s~g~~~~~~~~~~ 180 (299)
T COG1073 166 GESLGGALALLLLGA 180 (299)
T ss_pred eeccCceeecccccc
Confidence 999999999886654
No 291
>COG1087 GalE UDP-glucose 4-epimerase [Cell envelope biogenesis, outer membrane]
Probab=67.28 E-value=46 Score=26.60 Aligned_cols=87 Identities=17% Similarity=0.094 Sum_probs=48.8
Q ss_pred HHHHHHHHHcCccEEEEccccCCCCCCCccc--cchHHHHHHHHHHHHHHHhcCCceE------EEEEeCh---------
Q 022960 64 VNLAAALEREGISAFRFDFSGNGESEGSFLY--GNYRREAEDLRAIVQDFCAKGRVIT------AIIGHSK--------- 126 (289)
Q Consensus 64 ~~~~~~l~~~G~~v~~~d~~G~G~s~~~~~~--~~~~~~~~d~~~~i~~l~~~~~~~~------~l~G~S~--------- 126 (289)
...+..|.+.||.|+++|-...|........ .-+...+.|-..+-+.+.+..++-| ..||-|+
T Consensus 14 SHtv~~Ll~~G~~vvV~DNL~~g~~~~v~~~~~~f~~gDi~D~~~L~~vf~~~~idaViHFAa~~~VgESv~~Pl~Yy~N 93 (329)
T COG1087 14 SHTVRQLLKTGHEVVVLDNLSNGHKIALLKLQFKFYEGDLLDRALLTAVFEENKIDAVVHFAASISVGESVQNPLKYYDN 93 (329)
T ss_pred HHHHHHHHHCCCeEEEEecCCCCCHHHhhhccCceEEeccccHHHHHHHHHhcCCCEEEECccccccchhhhCHHHHHhh
Confidence 4566788889999999998866654321110 1111122333333333334344433 3556663
Q ss_pred --hHHHHHHHHHhCCCccEEEEeccC
Q 022960 127 --GGNAVLLYASKYNDISIVINISGR 150 (289)
Q Consensus 127 --Gg~~a~~~a~~~p~v~~~v~~~~~ 150 (289)
+|.+.+.-+.+.-.|+.+|+-++.
T Consensus 94 Nv~gTl~Ll~am~~~gv~~~vFSStA 119 (329)
T COG1087 94 NVVGTLNLIEAMLQTGVKKFIFSSTA 119 (329)
T ss_pred chHhHHHHHHHHHHhCCCEEEEecch
Confidence 566666555555559999988764
No 292
>PF10686 DUF2493: Protein of unknown function (DUF2493); InterPro: IPR019627 This entry is represented by Mycobacteriophage D29, Gp61. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. Members of this family are mainly Proteobacteria. The function is not known.
Probab=67.02 E-value=16 Score=21.88 Aligned_cols=33 Identities=27% Similarity=0.440 Sum_probs=21.3
Q ss_pred CCcEEEEEcCCCCCCCCcchHHHHHHHHHc-CccEEEE
Q 022960 44 SKQLVIVCHGFQSTKDRIPMVNLAAALERE-GISAFRF 80 (289)
Q Consensus 44 ~~~~iv~~hG~~~~~~~~~~~~~~~~l~~~-G~~v~~~ 80 (289)
..|.++++||..... ...++..++.. |+.++.+
T Consensus 30 ~~~~~~lvhGga~~G----aD~iA~~wA~~~gv~~~~~ 63 (71)
T PF10686_consen 30 RHPDMVLVHGGAPKG----ADRIAARWARERGVPVIRF 63 (71)
T ss_pred hCCCEEEEECCCCCC----HHHHHHHHHHHCCCeeEEe
Confidence 457788999987433 35566666654 7665553
No 293
>cd07232 Pat_PLPL Patain-like phospholipase. Patatin-like phospholipase. This family consists of various patatin glycoproteins from plants and fungi. The patatin protein accounts for up to 40% of the total soluble protein in potato tubers. Patatin is a storage protein, but it also has the enzymatic activity of a lipid acyl hydrolase, catalyzing the cleavage of fatty acids from membrane lipids. Members of this family have been found also in vertebrates.
Probab=66.90 E-value=6 Score=33.07 Aligned_cols=36 Identities=17% Similarity=0.250 Sum_probs=27.8
Q ss_pred HHHHHHHHhcCCceEEEEEeChhHHHHHHHHHhCCC
Q 022960 105 RAIVQDFCAKGRVITAIIGHSKGGNAVLLYASKYND 140 (289)
Q Consensus 105 ~~~i~~l~~~~~~~~~l~G~S~Gg~~a~~~a~~~p~ 140 (289)
.-+++.|.+++..+-++.|.|.|+.+|..++...++
T Consensus 83 ~GVlkaL~e~gllp~iI~GtSAGAivaalla~~t~~ 118 (407)
T cd07232 83 FGVVKALLDADLLPNVISGTSGGSLVAALLCTRTDE 118 (407)
T ss_pred HHHHHHHHhCCCCCCEEEEECHHHHHHHHHHcCCHH
Confidence 345666666677667899999999999999985543
No 294
>cd07229 Pat_TGL3_like Triacylglycerol lipase 3. Triacylglycerol lipase 3 (TGL3) are responsible for all the TAG lipase activity of the lipid particle. Triacylglycerol (TAG) lipases are also necessary for the mobilization of TAG stored in lipid particles. TGL3 contains the consensus sequence motif GXSXG, which is found in lipolytic enzymes. This family includes Tgl3p from Saccharomyces cerevisiae.
Probab=66.81 E-value=7.1 Score=32.33 Aligned_cols=35 Identities=17% Similarity=0.310 Sum_probs=27.9
Q ss_pred HHHHHHHhcCCceEEEEEeChhHHHHHHHHHhCCC
Q 022960 106 AIVQDFCAKGRVITAIIGHSKGGNAVLLYASKYND 140 (289)
Q Consensus 106 ~~i~~l~~~~~~~~~l~G~S~Gg~~a~~~a~~~p~ 140 (289)
-+++.|.+.++.+=++.|.|.|+.+|..+|...++
T Consensus 100 Gv~kaL~e~gl~p~~i~GtS~Gaivaa~~a~~~~~ 134 (391)
T cd07229 100 GVVKALWLRGLLPRIITGTATGALIAALVGVHTDE 134 (391)
T ss_pred HHHHHHHHcCCCCceEEEecHHHHHHHHHHcCCHH
Confidence 45666666677777899999999999999985443
No 295
>KOG2170 consensus ATPase of the AAA+ superfamily [General function prediction only]
Probab=65.44 E-value=23 Score=28.16 Aligned_cols=32 Identities=31% Similarity=0.389 Sum_probs=22.2
Q ss_pred CCCcEEEEEcCCCCCCCCcchHHHHHHHHHcC
Q 022960 43 GSKQLVIVCHGFQSTKDRIPMVNLAAALEREG 74 (289)
Q Consensus 43 ~~~~~iv~~hG~~~~~~~~~~~~~~~~l~~~G 74 (289)
..+|.++=+||+.|++.++.-+-+++.+-..|
T Consensus 107 p~KPLvLSfHG~tGTGKN~Va~iiA~n~~~~G 138 (344)
T KOG2170|consen 107 PRKPLVLSFHGWTGTGKNYVAEIIAENLYRGG 138 (344)
T ss_pred CCCCeEEEecCCCCCchhHHHHHHHHHHHhcc
Confidence 47899999999999987643444455554444
No 296
>cd07204 Pat_PNPLA_like Patatin-like phospholipase domain containing protein family. Members of this family share a patain domain, initially discovered in potato tubers. PNPLA protein members show non-specific hydrolase activity with a variety of substrates such as triacylglycerol, phospholipids, and retinylesters. It contains the lipase consensus sequence (Gly-X-Ser-X-Gly). Nomenclature of PNPLA family could be misleading as some of the mammalian members of this family show hydrolase, but no phospholipase activity.
Probab=65.43 E-value=12 Score=28.77 Aligned_cols=33 Identities=12% Similarity=0.111 Sum_probs=23.7
Q ss_pred HHHHHHhcCCc--e--EEEEEeChhHHHHHHHHHhCC
Q 022960 107 IVQDFCAKGRV--I--TAIIGHSKGGNAVLLYASKYN 139 (289)
Q Consensus 107 ~i~~l~~~~~~--~--~~l~G~S~Gg~~a~~~a~~~p 139 (289)
+++.|.+.++. + -.++|-|.|+.++..++...+
T Consensus 17 Vl~~L~e~g~~l~~~~~~i~GtSAGAl~aa~~a~g~~ 53 (243)
T cd07204 17 VASALREHAPRLLQNARRIAGASAGAIVAAVVLCGVS 53 (243)
T ss_pred HHHHHHHcCcccccCCCEEEEEcHHHHHHHHHHhCCC
Confidence 44555555543 2 289999999999999888654
No 297
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=65.09 E-value=15 Score=25.48 Aligned_cols=43 Identities=19% Similarity=0.257 Sum_probs=29.9
Q ss_pred EEEEEcCCCCCCCCcchHHHHHHHHHcCccEEEEccccCCCCC
Q 022960 47 LVIVCHGFQSTKDRIPMVNLAAALEREGISAFRFDFSGNGESE 89 (289)
Q Consensus 47 ~iv~~hG~~~~~~~~~~~~~~~~l~~~G~~v~~~d~~G~G~s~ 89 (289)
++|.+-|.-+++.+.+.+.++..|.++|++|.++-.-+||...
T Consensus 1 pvv~VvG~~~sGKTTl~~~Li~~l~~~g~~v~~ik~~~~g~~~ 43 (140)
T PF03205_consen 1 PVVQVVGPKNSGKTTLIRKLINELKRRGYRVAVIKHTDHGQFE 43 (140)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEE-STTSTT
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHhHcCCceEEEEEccCCCcc
Confidence 3667777777766667788999999999999977666676554
No 298
>PRK14974 cell division protein FtsY; Provisional
Probab=64.90 E-value=69 Score=26.16 Aligned_cols=65 Identities=23% Similarity=0.346 Sum_probs=38.4
Q ss_pred HcCccEEEEccccCCCCCCCccccchHHHHHHHHHHHHHHHhcCCceEEEEEeChhHHHHHHHHHhCCC---ccEEEEe
Q 022960 72 REGISAFRFDFSGNGESEGSFLYGNYRREAEDLRAIVQDFCAKGRVITAIIGHSKGGNAVLLYASKYND---ISIVINI 147 (289)
Q Consensus 72 ~~G~~v~~~d~~G~G~s~~~~~~~~~~~~~~d~~~~i~~l~~~~~~~~~l~G~S~Gg~~a~~~a~~~p~---v~~~v~~ 147 (289)
..|+.++.+|-.|..... ....+.+..+.+.+ ....++++.-+.-|.-+...+..+.. +.++|+-
T Consensus 220 ~~~~DvVLIDTaGr~~~~--------~~lm~eL~~i~~~~---~pd~~iLVl~a~~g~d~~~~a~~f~~~~~~~giIlT 287 (336)
T PRK14974 220 ARGIDVVLIDTAGRMHTD--------ANLMDELKKIVRVT---KPDLVIFVGDALAGNDAVEQAREFNEAVGIDGVILT 287 (336)
T ss_pred hCCCCEEEEECCCccCCc--------HHHHHHHHHHHHhh---CCceEEEeeccccchhHHHHHHHHHhcCCCCEEEEe
Confidence 457888888888654322 23345555555444 45556777777777666665554432 6666653
No 299
>PF01656 CbiA: CobQ/CobB/MinD/ParA nucleotide binding domain; InterPro: IPR002586 This entry consists of various cobyrinic acid a,c-diamide synthases. These include CbiA and CbiP from Salmonella typhimurium []., and CobQ from Rhodobacter capsulatus []. These amidases catalyse amidations to various side chains of hydrogenobyrinic acid or cobyrinic acid a,c-diamide in the biosynthesis of cobalamin (vitamin B12) from uroporphyrinogen III. Vitamin B12 is an important cofactor and an essential nutrient for many plants and animals and is primarily produced by bacteria [].; PDB: 3K9G_A 3K9H_B 3EZ9_B 3EZF_A 3EZ2_B 3EZ6_A 3EZ7_A 1G3Q_A 1G3R_A 1DTS_A ....
Probab=64.56 E-value=8.5 Score=28.07 Aligned_cols=36 Identities=28% Similarity=0.354 Sum_probs=26.2
Q ss_pred EEEEcCCCCCCCCcchHHHHHHHHHcCccEEEEccc
Q 022960 48 VIVCHGFQSTKDRIPMVNLAAALEREGISAFRFDFS 83 (289)
Q Consensus 48 iv~~hG~~~~~~~~~~~~~~~~l~~~G~~v~~~d~~ 83 (289)
|.+..+-||.+.+..-..++..|+++|+.|+.+|.-
T Consensus 1 I~v~~~kGG~GKTt~a~~la~~la~~g~~VlliD~D 36 (195)
T PF01656_consen 1 IAVTSGKGGVGKTTIAANLAQALARKGKKVLLIDLD 36 (195)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHHHTTS-EEEEEES
T ss_pred CEEEcCCCCccHHHHHHHHHhccccccccccccccC
Confidence 445566666665545667899999999999999984
No 300
>cd07231 Pat_SDP1-like Sugar-Dependent 1 like lipase. Sugar-Dependent 1 (SDP1) lipase has a patatin-like acyl-hydrolase domain that initiates the breakdown of storage oil in germinating Arabidopsis seeds. This acyl-hydrolase domain is homologus to yeast triacylglycerol lipase 3 and human adipose triglyceride lipase. This family includes SDP1 from Arabidopsis thaliana.
Probab=64.28 E-value=7.8 Score=31.00 Aligned_cols=33 Identities=18% Similarity=0.274 Sum_probs=25.7
Q ss_pred HHHHHHHhcCCceEEEEEeChhHHHHHHHHHhC
Q 022960 106 AIVQDFCAKGRVITAIIGHSKGGNAVLLYASKY 138 (289)
Q Consensus 106 ~~i~~l~~~~~~~~~l~G~S~Gg~~a~~~a~~~ 138 (289)
-+++.|.+.+..+-++.|.|.|+.+|..++...
T Consensus 85 GVlkaL~e~gl~p~~i~GsSaGAivaa~~~~~t 117 (323)
T cd07231 85 GVVRTLVEHQLLPRVIAGSSVGSIVCAIIATRT 117 (323)
T ss_pred HHHHHHHHcCCCCCEEEEECHHHHHHHHHHcCC
Confidence 445566666777778999999999999988754
No 301
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=64.16 E-value=71 Score=25.28 Aligned_cols=39 Identities=13% Similarity=0.305 Sum_probs=28.9
Q ss_pred CCcEEEEEcCCCCCCCCcchHHHHHHHHHcCccEEEEcc
Q 022960 44 SKQLVIVCHGFQSTKDRIPMVNLAAALEREGISAFRFDF 82 (289)
Q Consensus 44 ~~~~iv~~hG~~~~~~~~~~~~~~~~l~~~G~~v~~~d~ 82 (289)
.+|+++++-|..|++...+.+.+...+.+.+-..+++++
T Consensus 17 ~~p~~ilVvGMAGSGKTTF~QrL~~hl~~~~~ppYviNL 55 (366)
T KOG1532|consen 17 QRPVIILVVGMAGSGKTTFMQRLNSHLHAKKTPPYVINL 55 (366)
T ss_pred cCCcEEEEEecCCCCchhHHHHHHHHHhhccCCCeEEeC
Confidence 678888888988888766778888888877655555443
No 302
>KOG1252 consensus Cystathionine beta-synthase and related enzymes [Amino acid transport and metabolism]
Probab=62.50 E-value=70 Score=25.99 Aligned_cols=38 Identities=13% Similarity=0.173 Sum_probs=24.7
Q ss_pred CCcEEEEEcCCCCCCCCcchHHHHHHHHHc--CccEEEEcccc
Q 022960 44 SKQLVIVCHGFQSTKDRIPMVNLAAALERE--GISAFRFDFSG 84 (289)
Q Consensus 44 ~~~~iv~~hG~~~~~~~~~~~~~~~~l~~~--G~~v~~~d~~G 84 (289)
.+++=+|+||.|.... ...+.++|.++ +..|+..|.-+
T Consensus 210 ~g~vDi~V~gaGTGGT---itgvGRylke~~~~~kVv~vdp~~ 249 (362)
T KOG1252|consen 210 DGKVDIFVAGAGTGGT---ITGVGRYLKEQNPNIKVVGVDPQE 249 (362)
T ss_pred cCCCCEEEeccCCCce---eechhHHHHHhCCCCEEEEeCCCc
Confidence 5666678888775542 35566777665 46788877543
No 303
>PF12000 Glyco_trans_4_3: Gkycosyl transferase family 4 group; InterPro: IPR022623 This presumed domain is functionally uncharacterised and found in bacteria. This region is about 170 amino acids in length and is found N-terminal to PF00534 from PFAM. There is a single completely conserved residue G that may be functionally important.
Probab=61.94 E-value=38 Score=24.48 Aligned_cols=74 Identities=14% Similarity=0.246 Sum_probs=41.9
Q ss_pred cCccEEEEccccCCCCCCCccccchHHH---HHHHHHHHHHHHhcCCceEEEEEeChhHHHHHHHHHhCCCccEEEEe
Q 022960 73 EGISAFRFDFSGNGESEGSFLYGNYRRE---AEDLRAIVQDFCAKGRVITAIIGHSKGGNAVLLYASKYNDISIVINI 147 (289)
Q Consensus 73 ~G~~v~~~d~~G~G~s~~~~~~~~~~~~---~~d~~~~i~~l~~~~~~~~~l~G~S~Gg~~a~~~a~~~p~v~~~v~~ 147 (289)
.|.+++.+..+.-...........++.. .+.+..++..|++++..+=+|+|||--|.... +-.-.|++.-+.-+
T Consensus 19 ~GV~~~~y~~~~~~~~~~~~~~~~~e~~~~rg~av~~a~~~L~~~Gf~PDvI~~H~GWGe~Lf-lkdv~P~a~li~Y~ 95 (171)
T PF12000_consen 19 PGVRVVRYRPPRGPTPGTHPYVRDFEAAVLRGQAVARAARQLRAQGFVPDVIIAHPGWGETLF-LKDVFPDAPLIGYF 95 (171)
T ss_pred CCcEEEEeCCCCCCCCCCCcccccHHHHHHHHHHHHHHHHHHHHcCCCCCEEEEcCCcchhhh-HHHhCCCCcEEEEE
Confidence 4777777776322222222222334433 36677777888888887789999975554332 23445765444433
No 304
>cd01819 Patatin_and_cPLA2 Patatins and Phospholipases. Patatin-like phospholipase. This family consists of various patatin glycoproteins from plants. The patatin protein accounts for up to 40% of the total soluble protein in potato tubers. Patatin is a storage protein, but it also has the enzymatic activity of a lipid acyl hydrolase, catalyzing the cleavage of fatty acids from membrane lipids. Members of this family have also been found in vertebrates. This family also includes the catalytic domain of cytosolic phospholipase A2 (PLA2; EC 3.1.1.4) hydrolyzes the sn-2-acyl ester bond of phospholipids to release arachidonic acid. At the active site, cPLA2 contains a serine nucleophile through which the catalytic mechanism is initiated. The active site is partially covered by a solvent-accessible flexible lid. cPLA2 displays interfacial activation as it exists in both "closed lid" and "open lid" forms.
Probab=61.91 E-value=14 Score=26.12 Aligned_cols=29 Identities=17% Similarity=0.303 Sum_probs=21.1
Q ss_pred HHHHHHhcCC--ceEEEEEeChhHHHHHHHH
Q 022960 107 IVQDFCAKGR--VITAIIGHSKGGNAVLLYA 135 (289)
Q Consensus 107 ~i~~l~~~~~--~~~~l~G~S~Gg~~a~~~a 135 (289)
+++.+.+++. .--.+.|.|.|+.++..++
T Consensus 16 vl~~l~~~~~~~~~~~~~G~SaGa~~~~~~~ 46 (155)
T cd01819 16 VLSALAERGLLDCVTYLAGTSGGAWVAATLY 46 (155)
T ss_pred HHHHHHHhCCccCCCEEEEEcHHHHHHHHHh
Confidence 3444444444 4458999999999999988
No 305
>PF03976 PPK2: Polyphosphate kinase 2 (PPK2); InterPro: IPR022488 This presumed domain is found in one or two copies per protein. The domain is about 230 amino acids in length and has many conserved motifs, it has polyphosphate kinase activity [, ].; PDB: 3CZP_A 3RHF_D 3CZQ_B.
Probab=61.40 E-value=2.8 Score=31.78 Aligned_cols=40 Identities=15% Similarity=0.270 Sum_probs=30.1
Q ss_pred CCcEEEEEcCCCCCCCCcchHHHHHHHHHcCccEEEEccc
Q 022960 44 SKQLVIVCHGFQSTKDRIPMVNLAAALEREGISAFRFDFS 83 (289)
Q Consensus 44 ~~~~iv~~hG~~~~~~~~~~~~~~~~l~~~G~~v~~~d~~ 83 (289)
..|+||++.|+.+++.......+...|..+|+.|.++.-|
T Consensus 29 ~~~vlIl~eG~d~sGKg~~I~~l~~~lDPR~~~v~~~~~p 68 (228)
T PF03976_consen 29 GIPVLILFEGWDASGKGGTINRLIEWLDPRGFRVHAFGKP 68 (228)
T ss_dssp HHEEEEEEEESTTSSHHHHHHHHHCCS-GGGEEEEE-SS-
T ss_pred CCcEEEEEeccccCCchHHHHHHHHhCCCCeeEEEeCCCC
Confidence 3579999999999886555667777778889999999876
No 306
>cd07220 Pat_PNPLA2 Patatin-like phospholipase domain containing protein 2. PNPLA2 plays a key role in hydrolysis of stored triacylglecerols and is also known as adipose triglyceride lipase (ATGL). Members of this family share a patain domain, initially discovered in potato tubers. ATGL is expressed in white and brown adipose tissue in high mRNA levels. Mutations in PNPLA2 encoding adipose triglyceride lipase (ATGL) leads to neutral lipid storage disease (NLSD) which is characterized by the accumulation of triglycerides in multiple tissues. ATGL mutations are also commonly associated with severe forms of skeletal- and cardio-myopathy. This family includes patatin-like proteins: TTS-2.2 (transport-secretion protein 2.2), PNPLA2 (Patatin-like phospholipase domain-containing protein 2), and iPLA2-zeta (Calcium-independent phospholipase A2) from Homo sapiens.
Probab=61.18 E-value=14 Score=28.50 Aligned_cols=33 Identities=12% Similarity=0.107 Sum_probs=22.7
Q ss_pred HHHHHHhcCCc----eEEEEEeChhHHHHHHHHHhCC
Q 022960 107 IVQDFCAKGRV----ITAIIGHSKGGNAVLLYASKYN 139 (289)
Q Consensus 107 ~i~~l~~~~~~----~~~l~G~S~Gg~~a~~~a~~~p 139 (289)
+++.|.++++. .-.++|-|.|+.++..++...+
T Consensus 22 Vl~~L~e~g~~l~~~~~~i~G~SAGAl~aa~~a~g~~ 58 (249)
T cd07220 22 VASCLLEHAPFLVANARKIYGASAGALTATALVTGVC 58 (249)
T ss_pred HHHHHHhcCCcccccCCeEEEEcHHHHHHHHHHcCCC
Confidence 34444444432 2468999999999999887653
No 307
>PRK07933 thymidylate kinase; Validated
Probab=61.08 E-value=16 Score=27.39 Aligned_cols=41 Identities=32% Similarity=0.389 Sum_probs=32.6
Q ss_pred EEEEcCCCCCCCCcchHHHHHHHHHcCccEEEEccccCCCC
Q 022960 48 VIVCHGFQSTKDRIPMVNLAAALEREGISAFRFDFSGNGES 88 (289)
Q Consensus 48 iv~~hG~~~~~~~~~~~~~~~~l~~~G~~v~~~d~~G~G~s 88 (289)
+|.+=|..|++.+.....+.+.|.+.|+.|+....|++|.+
T Consensus 2 ~IviEG~dGsGKST~~~~L~~~L~~~g~~v~~~~~P~~~~~ 42 (213)
T PRK07933 2 LIAIEGVDGAGKRTLTEALRAALEARGRSVATLAFPRYGRS 42 (213)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCCCC
Confidence 46677877777655678899999999999999999976643
No 308
>cd07206 Pat_TGL3-4-5_SDP1 Triacylglycerol lipase 3, 4, and 5 and Sugar-Dependent 1 lipase. Triacylglycerol lipases are involved in triacylglycerol mobilization and degradation; they are found in lipid particles. TGL4 is 30% homologus to TGL3, whereas TGL5 is 26% homologus to TGL3. Sugar-Dependent 1 (SDP1) lipase has a patatin-like acyl-hydrolase domain that initiates the breakdown of storage oil in germinating Arabidopsis seeds. This family includes subfamilies of proteins: TGL3, TGL4, TGL5, and SDP1.
Probab=60.96 E-value=14 Score=29.43 Aligned_cols=34 Identities=18% Similarity=0.279 Sum_probs=25.2
Q ss_pred HHHHHHHhcCCceEEEEEeChhHHHHHHHHHhCC
Q 022960 106 AIVQDFCAKGRVITAIIGHSKGGNAVLLYASKYN 139 (289)
Q Consensus 106 ~~i~~l~~~~~~~~~l~G~S~Gg~~a~~~a~~~p 139 (289)
-+++.+.+.++.+-++.|.|.|+.+|..++....
T Consensus 86 Gvl~aL~e~~l~~~~i~GtSaGAi~aa~~~~~~~ 119 (298)
T cd07206 86 GVVKALWEQDLLPRVISGSSAGAIVAALLGTHTD 119 (298)
T ss_pred HHHHHHHHcCCCCCEEEEEcHHHHHHHHHHcCCc
Confidence 3455555556666689999999999999887543
No 309
>COG0218 Predicted GTPase [General function prediction only]
Probab=60.62 E-value=28 Score=25.81 Aligned_cols=56 Identities=16% Similarity=0.291 Sum_probs=31.0
Q ss_pred CceEEEEEeCCCCccChhhH---HHHHhhC---CCcE--EEEEcCCCcccccCchHHHHHHHHHHHh
Q 022960 211 DCRVLTIHGTKDKMVPAEDA---LEFDKFI---PNHK--LHIIEGADHEFTSHQDELASLVIQFIKA 269 (289)
Q Consensus 211 ~~P~l~i~g~~D~~~~~~~~---~~~~~~~---~~~~--~~~~~~~gH~~~~~~~~~~~~i~~fl~~ 269 (289)
.+|++++...-|.+-..+.. ...++.+ +... +..++-....- -+++...|.+|+..
T Consensus 135 ~i~~~vv~tK~DKi~~~~~~k~l~~v~~~l~~~~~~~~~~~~~ss~~k~G---i~~l~~~i~~~~~~ 198 (200)
T COG0218 135 GIPVIVVLTKADKLKKSERNKQLNKVAEELKKPPPDDQWVVLFSSLKKKG---IDELKAKILEWLKE 198 (200)
T ss_pred CCCeEEEEEccccCChhHHHHHHHHHHHHhcCCCCccceEEEEecccccC---HHHHHHHHHHHhhc
Confidence 78999999999998754443 3333332 2222 33333221111 25666777776653
No 310
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=60.01 E-value=43 Score=25.20 Aligned_cols=36 Identities=17% Similarity=0.220 Sum_probs=30.0
Q ss_pred EEEEEcCCCCCCCCcchHHHHHHHHHcCccEEEEcc
Q 022960 47 LVIVCHGFQSTKDRIPMVNLAAALEREGISAFRFDF 82 (289)
Q Consensus 47 ~iv~~hG~~~~~~~~~~~~~~~~l~~~G~~v~~~d~ 82 (289)
++|++.|.++++.+-+-..+++.|.+.+++|+...-
T Consensus 2 pLiIlTGyPgsGKTtfakeLak~L~~~i~~vi~l~k 37 (261)
T COG4088 2 PLIILTGYPGSGKTTFAKELAKELRQEIWRVIHLEK 37 (261)
T ss_pred ceEEEecCCCCCchHHHHHHHHHHHHhhhhccccch
Confidence 478889999998776778899999999998887654
No 311
>cd07218 Pat_iPLA2 Calcium-independent phospholipase A2; Classified as Group IVA-1 PLA2. Calcium-independent phospholipase A2; otherwise known as Group IVA-1 PLA2. It contains the lipase consensus sequence (Gly-X-Ser-X-Gly);mutagenesis experiments confirm the role of this serine as a nucleophile. Some members of this group show triacylglycerol lipase activity (EC 3:1:1:3). Members include iPLA-1, iPLA-2, and iPLA-3 from Aedes aegypti and show acylglycerol transacylase/lipase activity. Also includes putative iPLA2-eta from Pediculus humanus corporis which shows patatin-like phospholipase activity.
Probab=58.44 E-value=17 Score=28.07 Aligned_cols=20 Identities=25% Similarity=0.193 Sum_probs=17.4
Q ss_pred EEEEeChhHHHHHHHHHhCC
Q 022960 120 AIIGHSKGGNAVLLYASKYN 139 (289)
Q Consensus 120 ~l~G~S~Gg~~a~~~a~~~p 139 (289)
.+.|-|+|+.+|..++...+
T Consensus 33 ~i~GtSAGAl~aa~~a~g~~ 52 (245)
T cd07218 33 KISGASAGALAACCLLCDLP 52 (245)
T ss_pred eEEEEcHHHHHHHHHHhCCc
Confidence 49999999999999987654
No 312
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=58.36 E-value=1.2e+02 Score=25.87 Aligned_cols=74 Identities=15% Similarity=0.218 Sum_probs=40.3
Q ss_pred HHHHHHHcCccEEEEccccCCCCCCCccccchHHHHHHHHHHHHHHHhcCCceEEEEEe-ChhHHHHHHHHHhCCC--cc
Q 022960 66 LAAALEREGISAFRFDFSGNGESEGSFLYGNYRREAEDLRAIVQDFCAKGRVITAIIGH-SKGGNAVLLYASKYND--IS 142 (289)
Q Consensus 66 ~~~~l~~~G~~v~~~d~~G~G~s~~~~~~~~~~~~~~d~~~~i~~l~~~~~~~~~l~G~-S~Gg~~a~~~a~~~p~--v~ 142 (289)
+.+.+...++.++.+|-+|+...+ ...++.+..+++.........++|+=- +.|..-....+..+.. +.
T Consensus 291 l~~~l~~~~~D~VLIDTaGr~~rd--------~~~l~eL~~~~~~~~~~~~~e~~LVLsAt~~~~~~~~~~~~f~~~~~~ 362 (432)
T PRK12724 291 FKETLARDGSELILIDTAGYSHRN--------LEQLERMQSFYSCFGEKDSVENLLVLSSTSSYHHTLTVLKAYESLNYR 362 (432)
T ss_pred HHHHHHhCCCCEEEEeCCCCCccC--------HHHHHHHHHHHHhhcCCCCCeEEEEEeCCCCHHHHHHHHHHhcCCCCC
Confidence 344455568999999987654322 233455555555442221223444444 4444455565665644 77
Q ss_pred EEEEe
Q 022960 143 IVINI 147 (289)
Q Consensus 143 ~~v~~ 147 (289)
++|+-
T Consensus 363 glIlT 367 (432)
T PRK12724 363 RILLT 367 (432)
T ss_pred EEEEE
Confidence 88763
No 313
>PRK00652 lpxK tetraacyldisaccharide 4'-kinase; Reviewed
Probab=58.08 E-value=93 Score=25.32 Aligned_cols=42 Identities=24% Similarity=0.215 Sum_probs=28.1
Q ss_pred EEEEEc--CCCCCCCCcchHHHHHHHHHcCccEEEEccccCCCCC
Q 022960 47 LVIVCH--GFQSTKDRIPMVNLAAALEREGISAFRFDFSGNGESE 89 (289)
Q Consensus 47 ~iv~~h--G~~~~~~~~~~~~~~~~l~~~G~~v~~~d~~G~G~s~ 89 (289)
+||.+- ..||++.+.+...+++.|.++|++|..+ -||||...
T Consensus 50 pvIsVGNi~vGGtGKTP~v~~L~~~l~~~g~~~~il-sRGYg~~~ 93 (325)
T PRK00652 50 PVIVVGNITVGGTGKTPVVIALAEQLQARGLKPGVV-SRGYGGKL 93 (325)
T ss_pred CEEEEcCeeCCCCChHHHHHHHHHHHHHCCCeEEEE-CCCCCCCc
Confidence 455552 2344444456778889999899887766 48888754
No 314
>COG1856 Uncharacterized homolog of biotin synthetase [Function unknown]
Probab=58.05 E-value=53 Score=24.89 Aligned_cols=71 Identities=17% Similarity=0.127 Sum_probs=43.3
Q ss_pred HHHHHHHcCccEEEEccccCCCCCCCccccchHHHHHHHHHHHHHHHhcCCc--eEEEEEeChhHH----HHHHHHHhC
Q 022960 66 LAAALEREGISAFRFDFSGNGESEGSFLYGNYRREAEDLRAIVQDFCAKGRV--ITAIIGHSKGGN----AVLLYASKY 138 (289)
Q Consensus 66 ~~~~l~~~G~~v~~~d~~G~G~s~~~~~~~~~~~~~~d~~~~i~~l~~~~~~--~~~l~G~S~Gg~----~a~~~a~~~ 138 (289)
..+.|...+..|+..|+-|--..- ...+.....++|....+..|.+.++. +-+.+|-+.|+. -|+.+...+
T Consensus 102 ~~eklk~~~vdvvsLDfvgDn~vI--k~vy~l~ksv~dyl~~l~~L~e~~irvvpHitiGL~~gki~~e~kaIdiL~~~ 178 (275)
T COG1856 102 DLEKLKEELVDVVSLDFVGDNDVI--KRVYKLPKSVEDYLRSLLLLKENGIRVVPHITIGLDFGKIHGEFKAIDILVNY 178 (275)
T ss_pred HHHHHHHhcCcEEEEeecCChHHH--HHHHcCCccHHHHHHHHHHHHHcCceeceeEEEEeccCcccchHHHHHHHhcC
Confidence 345566667788888887532111 11112233367777778888776543 458999999984 466666644
No 315
>TIGR02069 cyanophycinase cyanophycinase. This model describes both cytosolic and extracellular cyanophycinases. The former are part of a system in many Cyanobacteria and a few other species of generating and later utilizing a storage polymer for nitrogen, carbon, and energy, called cyanophycin. The latter are found in species such as Pseudomonas anguilliseptica that can use external cyanophycin. The polymer has a backbone of L-aspartic acid, with most Asp side chain carboxyl groups attached to L-arginine.
Probab=57.78 E-value=56 Score=25.35 Aligned_cols=40 Identities=10% Similarity=0.165 Sum_probs=26.6
Q ss_pred CCCcEEEEEcCCCCCCCCcchHHHHHHHHHcCcc-EEEEccc
Q 022960 43 GSKQLVIVCHGFQSTKDRIPMVNLAAALEREGIS-AFRFDFS 83 (289)
Q Consensus 43 ~~~~~iv~~hG~~~~~~~~~~~~~~~~l~~~G~~-v~~~d~~ 83 (289)
++.+.|++++-.++... .+.....+.|.+.|+. |-.++.+
T Consensus 26 ~~~~rI~~iptAS~~~~-~~~~~~~~~~~~lG~~~v~~l~i~ 66 (250)
T TIGR02069 26 GEDAIIVIITSASEEPR-EVGERYITIFSRLGVKEVKILDVR 66 (250)
T ss_pred CCCceEEEEeCCCCChH-HHHHHHHHHHHHcCCceeEEEecC
Confidence 35678999987665443 2456677778888884 5566664
No 316
>cd07221 Pat_PNPLA3 Patatin-like phospholipase domain containing protein 3. PNPLA3 is a triacylglycerol lipase that mediates triacylglycerol hydrolysis in adipocytes and is an indicator of the nutritional state. PNPLA3 is also known as adiponutrin (ADPN) or iPLA2-epsilon. Human adiponutrins are bound to the cell membrane of adipocytes and show transacylase, TG hydrolase, and PLA2 activity. This family includes patatin-like proteins: ADPN (adiponutrin) from mammals, PNPLA3 (Patatin-like phospholipase domain-containing protein 3), and iPLA2-epsilon (Calcium-independent phospholipase A2) from Homo sapiens.
Probab=57.72 E-value=18 Score=28.04 Aligned_cols=21 Identities=19% Similarity=0.265 Sum_probs=18.0
Q ss_pred EEEEEeChhHHHHHHHHHhCC
Q 022960 119 TAIIGHSKGGNAVLLYASKYN 139 (289)
Q Consensus 119 ~~l~G~S~Gg~~a~~~a~~~p 139 (289)
-.++|-|.|+.++..++...+
T Consensus 34 ~~i~GtSAGAl~aa~~asg~~ 54 (252)
T cd07221 34 RMFFGASAGALHCVTFLSGLP 54 (252)
T ss_pred CEEEEEcHHHHHHHHHHhCCC
Confidence 379999999999999987654
No 317
>PF11713 Peptidase_C80: Peptidase C80 family; InterPro: IPR020974 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This entry identifies a domain that functions as a cysteine peptidase that belongs to MEROPS peptidase family C80 (RTX self-cleaving toxin, clan CD). This domain is found in bacterial toxins that self-process by a cysteine peptidase mechanism. These include Vibrio cholerae RTX toxin [], and Clostridium difficile toxins A and B []. Some pathogenic bacteria produce unrelated toxins that also require activation and processing, the processing often being autolytic as it is in anthrax lethal factor, tentoxilysin (the tetanus neurotoxin) and bontoxilysin (the botulinum neurotoxin), all of which are metallopeptidases.; PDB: 3GCD_C 3EEB_B 3FZY_A 3PEE_A 3PA8_B 3HO6_A.
Probab=57.46 E-value=14 Score=26.23 Aligned_cols=52 Identities=21% Similarity=0.231 Sum_probs=26.5
Q ss_pred EEEccccCCCCCCC---ccccchHHHHHHHHHHHHHHHhc-----CCceEEEEEeChhHH
Q 022960 78 FRFDFSGNGESEGS---FLYGNYRREAEDLRAIVQDFCAK-----GRVITAIIGHSKGGN 129 (289)
Q Consensus 78 ~~~d~~G~G~s~~~---~~~~~~~~~~~d~~~~i~~l~~~-----~~~~~~l~G~S~Gg~ 129 (289)
+-+-+-|||..... ....+..+.+.-+..+-+.+.+. .+++|.|+|.|++..
T Consensus 57 ~rw~lVGHG~~~~~~~~l~g~~a~~La~~l~~~~~~l~~~~~~~~~P~~IsLvGC~l~~~ 116 (157)
T PF11713_consen 57 VRWQLVGHGRDEFNNQTLAGYSADELANKLIKFKQQLKQKYGINISPKKISLVGCSLADN 116 (157)
T ss_dssp EEEEEE--EESSTSSSEETTEEHHHHHHHHHHHHHHHHHHHTTT--ESEEEEESSS-S-T
T ss_pred ceEEEEEeCCCcCCCceeCCCCHHHHHHHHHHHHHHHHHhccCCCCCCEEEEEEecccCC
Confidence 34445678776211 12234445555554444555543 467899999999887
No 318
>PF10605 3HBOH: 3HB-oligomer hydrolase (3HBOH) ; InterPro: IPR016582 This entry represents a group of predicted D-(-)-3-hydroxybutyrate oligomer hydrolases (also known as 3HB-oligomer hydrolase), which function in the degradation of poly-3-hydroxybutyrate (PHB). These enzymes catalyse the hydrolysis of D(-)-3-hydroxybutyrate oligomers (3HB-oligomers) into 3HB-monomers [, ].; GO: 0047989 hydroxybutyrate-dimer hydrolase activity, 0019605 butyrate metabolic process, 0005615 extracellular space
Probab=57.23 E-value=11 Score=32.96 Aligned_cols=35 Identities=26% Similarity=0.245 Sum_probs=28.3
Q ss_pred eEEEEEeChhHHHHHHHHHhCCC--ccEEEEeccCCc
Q 022960 118 ITAIIGHSKGGNAVLLYASKYND--ISIVINISGRFN 152 (289)
Q Consensus 118 ~~~l~G~S~Gg~~a~~~a~~~p~--v~~~v~~~~~~~ 152 (289)
.++--+.|-||..++..+.+..+ |++++...|...
T Consensus 286 ~VIAssvSNGGgAal~AAEqD~~glIdgVvv~EP~v~ 322 (690)
T PF10605_consen 286 LVIASSVSNGGGAALAAAEQDTQGLIDGVVVSEPNVN 322 (690)
T ss_pred EEEEEeecCccHHHHhHhhcccCCceeeEEecCCccC
Confidence 35667889999999998888766 999998887543
No 319
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=56.21 E-value=1.3e+02 Score=25.68 Aligned_cols=68 Identities=16% Similarity=0.198 Sum_probs=37.9
Q ss_pred HHHHcCccEEEEccccCCCCCCCccccchHHHHHHHHHHHHHHHhcCCceEEEEEeChhHHHHHHHHHhCCC---ccEEE
Q 022960 69 ALEREGISAFRFDFSGNGESEGSFLYGNYRREAEDLRAIVQDFCAKGRVITAIIGHSKGGNAVLLYASKYND---ISIVI 145 (289)
Q Consensus 69 ~l~~~G~~v~~~d~~G~G~s~~~~~~~~~~~~~~d~~~~i~~l~~~~~~~~~l~G~S~Gg~~a~~~a~~~p~---v~~~v 145 (289)
.+...+|.++.+|-+|....+ +...+.+..+.+.+ ....+++|--++-|.-+...+..+.+ +.++|
T Consensus 177 ~~~~~~~DvVIIDTaGr~~~d--------~~l~~eL~~i~~~~---~p~e~lLVvda~tgq~~~~~a~~f~~~v~i~giI 245 (428)
T TIGR00959 177 YAKENGFDVVIVDTAGRLQID--------EELMEELAAIKEIL---NPDEILLVVDAMTGQDAVNTAKTFNERLGLTGVV 245 (428)
T ss_pred HHHhcCCCEEEEeCCCccccC--------HHHHHHHHHHHHhh---CCceEEEEEeccchHHHHHHHHHHHhhCCCCEEE
Confidence 344567999999999754322 22334444444433 34455666555555555655554432 66666
Q ss_pred Ee
Q 022960 146 NI 147 (289)
Q Consensus 146 ~~ 147 (289)
+-
T Consensus 246 lT 247 (428)
T TIGR00959 246 LT 247 (428)
T ss_pred Ee
Confidence 53
No 320
>PLN02840 tRNA dimethylallyltransferase
Probab=55.90 E-value=1.2e+02 Score=25.66 Aligned_cols=76 Identities=25% Similarity=0.223 Sum_probs=45.4
Q ss_pred CCcEEEEEcCCCCCCCCcchHHHHHHHHHc-CccEEEEcc----ccC--CCCC-----------------CCccccchHH
Q 022960 44 SKQLVIVCHGFQSTKDRIPMVNLAAALERE-GISAFRFDF----SGN--GESE-----------------GSFLYGNYRR 99 (289)
Q Consensus 44 ~~~~iv~~hG~~~~~~~~~~~~~~~~l~~~-G~~v~~~d~----~G~--G~s~-----------------~~~~~~~~~~ 99 (289)
....+|++-|..+++. ..++..|++. +..++..|- +|. |... .+...++...
T Consensus 19 ~~~~vi~I~GptgsGK----Ttla~~La~~~~~~iis~Ds~qvYr~~~IgTaKpt~eE~~~V~Hhlidil~p~e~ySv~~ 94 (421)
T PLN02840 19 KKEKVIVISGPTGAGK----SRLALELAKRLNGEIISADSVQVYRGLDVGSAKPSLSERKEVPHHLIDILHPSDDYSVGA 94 (421)
T ss_pred cCCeEEEEECCCCCCH----HHHHHHHHHHCCCCeEeccccceecceeEEcCCCCHHHHcCCCeEeEeecCCCCceeHHH
Confidence 3456778888887773 4456666665 456777774 222 1111 1123445677
Q ss_pred HHHHHHHHHHHHHhcCCceEEEEEe
Q 022960 100 EAEDLRAIVQDFCAKGRVITAIIGH 124 (289)
Q Consensus 100 ~~~d~~~~i~~l~~~~~~~~~l~G~ 124 (289)
+.++..++++.+..++.-+ +|+|-
T Consensus 95 F~~~A~~~I~~i~~rgkiP-IvVGG 118 (421)
T PLN02840 95 FFDDARRATQDILNRGRVP-IVAGG 118 (421)
T ss_pred HHHHHHHHHHHHHhcCCCE-EEEcC
Confidence 7888999999887765444 44543
No 321
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=55.72 E-value=48 Score=26.07 Aligned_cols=40 Identities=18% Similarity=0.204 Sum_probs=26.2
Q ss_pred EEEEEcCCCCCCCCcchHHHHHHHHHcCccEEEEccccCC
Q 022960 47 LVIVCHGFQSTKDRIPMVNLAAALEREGISAFRFDFSGNG 86 (289)
Q Consensus 47 ~iv~~hG~~~~~~~~~~~~~~~~l~~~G~~v~~~d~~G~G 86 (289)
++|++-|+++++.+.....+.+.|.+.++.|..++--..+
T Consensus 2 pLiil~G~P~SGKTt~a~~L~~~~~~~~~~v~~i~~~~~~ 41 (270)
T PF08433_consen 2 PLIILCGLPCSGKTTRAKELKKYLEEKGKEVVIISDDSLG 41 (270)
T ss_dssp -EEEEE--TTSSHHHHHHHHHHHHHHTT--EEEE-THHHH
T ss_pred EEEEEEcCCCCcHHHHHHHHHHHHHhcCCEEEEEcccccc
Confidence 5788889999987656677888888888999888755444
No 322
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=55.56 E-value=16 Score=22.64 Aligned_cols=33 Identities=33% Similarity=0.380 Sum_probs=23.5
Q ss_pred EEEcCCCCCCCCcchHHHHHHHHHcCccEEEEc
Q 022960 49 IVCHGFQSTKDRIPMVNLAAALEREGISAFRFD 81 (289)
Q Consensus 49 v~~hG~~~~~~~~~~~~~~~~l~~~G~~v~~~d 81 (289)
+++-|.++.+.+..-..++..|++.|+.|..+|
T Consensus 2 ~~~~g~~G~Gktt~~~~l~~~l~~~g~~v~~~~ 34 (99)
T cd01983 2 IVVTGKGGVGKTTLAANLAAALAKRGKRVLLID 34 (99)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEC
Confidence 344455555544456778889988899999988
No 323
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=54.72 E-value=1e+02 Score=24.24 Aligned_cols=63 Identities=10% Similarity=0.174 Sum_probs=38.8
Q ss_pred CccEEEEccccCCCCCCCccccchHHHHHHHHHHHHHHHhcCCceEEE-EEeChhHHHHHHHHHhCCC--ccEEEEe
Q 022960 74 GISAFRFDFSGNGESEGSFLYGNYRREAEDLRAIVQDFCAKGRVITAI-IGHSKGGNAVLLYASKYND--ISIVINI 147 (289)
Q Consensus 74 G~~v~~~d~~G~G~s~~~~~~~~~~~~~~d~~~~i~~l~~~~~~~~~l-~G~S~Gg~~a~~~a~~~p~--v~~~v~~ 147 (289)
++.++.+|.+|..... ....+.+.++++.. ....+++ +.-++++.-+...+..+.. +.++|+-
T Consensus 154 ~~D~ViIDt~Gr~~~~--------~~~l~el~~~~~~~---~~~~~~LVl~a~~~~~d~~~~~~~f~~~~~~~~I~T 219 (270)
T PRK06731 154 RVDYILIDTAGKNYRA--------SETVEEMIETMGQV---EPDYICLTLSASMKSKDMIEIITNFKDIHIDGIVFT 219 (270)
T ss_pred CCCEEEEECCCCCcCC--------HHHHHHHHHHHhhh---CCCeEEEEEcCccCHHHHHHHHHHhCCCCCCEEEEE
Confidence 6899999998764322 22344444444433 3334554 4456788788777777655 7788763
No 324
>cd07222 Pat_PNPLA4 Patatin-like phospholipase domain containing protein 4. PNPLA4, also known as GS2 (gene sequence-2), shows both lipase and transacylation activities. GS2 lipase is expressed in various tissues, predominantly in muscle and adipocytes tissue. It is also expressed in keratinocytes and shows retinyl ester hydrolase, acylglycerol, TG hydrolase, and PLA2 activity. This family includes patatin-like proteins: GS2 from mammals, PNPLA4 (Patatin-like phospholipase domain-containing protein 4), and iPLA2-eta (Calcium-independent phospholipase A2) from Homo sapiens.
Probab=53.97 E-value=20 Score=27.66 Aligned_cols=31 Identities=13% Similarity=0.206 Sum_probs=22.2
Q ss_pred HHHHHHHhcCCc---eE-EEEEeChhHHHHHHHHH
Q 022960 106 AIVQDFCAKGRV---IT-AIIGHSKGGNAVLLYAS 136 (289)
Q Consensus 106 ~~i~~l~~~~~~---~~-~l~G~S~Gg~~a~~~a~ 136 (289)
-+++.|.+.++. ++ .+.|-|+|+.+|..++.
T Consensus 16 GVl~~L~e~g~~l~~~~~~i~GtSaGAl~aa~~a~ 50 (246)
T cd07222 16 GAAKALLRHGKKLLKRVKRFAGASAGSLVAAVLLT 50 (246)
T ss_pred HHHHHHHHcCchhhccCCEEEEECHHHHHHHHHhc
Confidence 345555555543 33 89999999999999884
No 325
>cd03409 Chelatase_Class_II Class II Chelatase: a family of ATP-independent monomeric or homodimeric enzymes that catalyze the insertion of metal into protoporphyrin rings. This family includes protoporphyrin IX ferrochelatase (HemH), sirohydrochlorin ferrochelatase (SirB) and the cobaltochelatases, CbiK and CbiX. HemH and SirB are involved in heme and siroheme biosynthesis, respectively, while the cobaltochelatases are associated with cobalamin biosynthesis. Excluded from this family are the ATP-dependent heterotrimeric chelatases (class I) and the multifunctional homodimeric enzymes with dehydrogenase and chelatase activities (class III).
Probab=53.97 E-value=46 Score=21.10 Aligned_cols=27 Identities=22% Similarity=0.239 Sum_probs=17.1
Q ss_pred EEEEEcCCCCC-CCCcchHHHHHHHHHc
Q 022960 47 LVIVCHGFQST-KDRIPMVNLAAALERE 73 (289)
Q Consensus 47 ~iv~~hG~~~~-~~~~~~~~~~~~l~~~ 73 (289)
.|++-||.... ........+++.+.++
T Consensus 2 lllv~HGs~~~s~~~~~~~~~~~~l~~~ 29 (101)
T cd03409 2 LLVVGHGSPYKDPYKKDIEAQAHNLAES 29 (101)
T ss_pred EEEEECCCCCCccHHHHHHHHHHHHHHH
Confidence 57788998864 3212456677777665
No 326
>COG1506 DAP2 Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Amino acid transport and metabolism]
Probab=53.76 E-value=67 Score=28.88 Aligned_cols=65 Identities=20% Similarity=0.219 Sum_probs=40.4
Q ss_pred CCcEEEEEcCCCCCCCC-cchHHHHHHHHHcCccEEEEccccCCCCCCCccccchHHHHHHHHHHHHHHHh
Q 022960 44 SKQLVIVCHGFQSTKDR-IPMVNLAAALEREGISAFRFDFSGNGESEGSFLYGNYRREAEDLRAIVQDFCA 113 (289)
Q Consensus 44 ~~~~iv~~hG~~~~~~~-~~~~~~~~~l~~~G~~v~~~d~~G~G~s~~~~~~~~~~~~~~d~~~~i~~l~~ 113 (289)
-+.+++++||.....-. ..-..+...|...|..|-.+-+|+-|.+-... .....-+.++++++.+
T Consensus 550 i~~P~LliHG~~D~~v~~~q~~~~~~aL~~~g~~~~~~~~p~e~H~~~~~-----~~~~~~~~~~~~~~~~ 615 (620)
T COG1506 550 IKTPLLLIHGEEDDRVPIEQAEQLVDALKRKGKPVELVVFPDEGHGFSRP-----ENRVKVLKEILDWFKR 615 (620)
T ss_pred cCCCEEEEeecCCccCChHHHHHHHHHHHHcCceEEEEEeCCCCcCCCCc-----hhHHHHHHHHHHHHHH
Confidence 46789999998765421 12456778888889888888777544433221 2334455555665543
No 327
>COG0331 FabD (acyl-carrier-protein) S-malonyltransferase [Lipid metabolism]
Probab=53.50 E-value=17 Score=29.10 Aligned_cols=22 Identities=32% Similarity=0.335 Sum_probs=18.4
Q ss_pred CCceEEEEEeChhHHHHHHHHH
Q 022960 115 GRVITAIIGHSKGGNAVLLYAS 136 (289)
Q Consensus 115 ~~~~~~l~G~S~Gg~~a~~~a~ 136 (289)
+..+.++.|||+|=+.|+..+.
T Consensus 83 ~~~p~~~aGHSlGEysAl~~ag 104 (310)
T COG0331 83 GVKPDFVAGHSLGEYSALAAAG 104 (310)
T ss_pred CCCCceeecccHhHHHHHHHcc
Confidence 3667899999999999987665
No 328
>cd03413 CbiK_C Anaerobic cobalamin biosynthetic cobalt chelatase (CbiK), C-terminal domain. CbiK is part of the cobalt-early path for cobalamin biosynthesis. It catalyzes the insertion of cobalt into the oxidized form of precorrin-2, factor II (sirohydrochlorin), the second step of the anaerobic branch of vitamin B12 biosynthesis. CbiK belongs to the class II family of chelatases, and is a homomeric enzyme that does not require ATP for its enzymatic activity.
Probab=53.34 E-value=58 Score=21.14 Aligned_cols=28 Identities=21% Similarity=0.317 Sum_probs=19.2
Q ss_pred cEEEEEcCCCCCCCCcchHHHHHHHHHcC
Q 022960 46 QLVIVCHGFQSTKDRIPMVNLAAALEREG 74 (289)
Q Consensus 46 ~~iv~~hG~~~~~~~~~~~~~~~~l~~~G 74 (289)
..|++-||...... ..+..+...+.+.+
T Consensus 2 ~illvgHGSr~~~~-~~~~~l~~~l~~~~ 29 (103)
T cd03413 2 AVVFMGHGTDHPSN-AVYAALEYVLREED 29 (103)
T ss_pred eEEEEECCCCchhh-hHHHHHHHHHHhcC
Confidence 35677799877643 35777888887653
No 329
>PRK00889 adenylylsulfate kinase; Provisional
Probab=53.13 E-value=25 Score=25.23 Aligned_cols=38 Identities=16% Similarity=0.164 Sum_probs=27.8
Q ss_pred CcEEEEEcCCCCCCCCcchHHHHHHHHHcCccEEEEcc
Q 022960 45 KQLVIVCHGFQSTKDRIPMVNLAAALEREGISAFRFDF 82 (289)
Q Consensus 45 ~~~iv~~hG~~~~~~~~~~~~~~~~l~~~G~~v~~~d~ 82 (289)
.+.++++.|..|++.+.....++..|...|..+..+|-
T Consensus 3 ~g~~i~~~G~~GsGKST~a~~la~~l~~~g~~v~~id~ 40 (175)
T PRK00889 3 RGVTVWFTGLSGAGKTTIARALAEKLREAGYPVEVLDG 40 (175)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEcC
Confidence 34588888999988665566677777777777777754
No 330
>PRK10867 signal recognition particle protein; Provisional
Probab=52.81 E-value=1.5e+02 Score=25.38 Aligned_cols=67 Identities=16% Similarity=0.212 Sum_probs=35.9
Q ss_pred HHHHcCccEEEEccccCCCCCCCccccchHHHHHHHHHHHHHHHhcCCceEEEEEeChhHHHHHHHHHhCCC---ccEEE
Q 022960 69 ALEREGISAFRFDFSGNGESEGSFLYGNYRREAEDLRAIVQDFCAKGRVITAIIGHSKGGNAVLLYASKYND---ISIVI 145 (289)
Q Consensus 69 ~l~~~G~~v~~~d~~G~G~s~~~~~~~~~~~~~~d~~~~i~~l~~~~~~~~~l~G~S~Gg~~a~~~a~~~p~---v~~~v 145 (289)
.....+|.++.+|-+|....+ +...+.+..+.+.+ .+..++++--++-|.-+...+..+.+ +.++|
T Consensus 178 ~a~~~~~DvVIIDTaGrl~~d--------~~lm~eL~~i~~~v---~p~evllVlda~~gq~av~~a~~F~~~~~i~giI 246 (433)
T PRK10867 178 EAKENGYDVVIVDTAGRLHID--------EELMDELKAIKAAV---NPDEILLVVDAMTGQDAVNTAKAFNEALGLTGVI 246 (433)
T ss_pred HHHhcCCCEEEEeCCCCcccC--------HHHHHHHHHHHHhh---CCCeEEEEEecccHHHHHHHHHHHHhhCCCCEEE
Confidence 334457999999999864322 22233444444433 33445555555555555555554332 55666
Q ss_pred E
Q 022960 146 N 146 (289)
Q Consensus 146 ~ 146 (289)
+
T Consensus 247 l 247 (433)
T PRK10867 247 L 247 (433)
T ss_pred E
Confidence 5
No 331
>PLN02748 tRNA dimethylallyltransferase
Probab=52.78 E-value=1.1e+02 Score=26.30 Aligned_cols=77 Identities=16% Similarity=0.237 Sum_probs=47.2
Q ss_pred CCcEEEEEcCCCCCCCCcchHHHHHHHHHc-CccEEEEc----cccC--CCCC-----------------CCccccchHH
Q 022960 44 SKQLVIVCHGFQSTKDRIPMVNLAAALERE-GISAFRFD----FSGN--GESE-----------------GSFLYGNYRR 99 (289)
Q Consensus 44 ~~~~iv~~hG~~~~~~~~~~~~~~~~l~~~-G~~v~~~d----~~G~--G~s~-----------------~~~~~~~~~~ 99 (289)
+++.+|+|-|-.+++. ..++..|+.. +..++..| |+|. |... .+...++...
T Consensus 20 ~~~~~i~i~GptgsGK----s~la~~la~~~~~eii~~DsmQVYrgLdIgTaKpt~eE~~~VpHHLid~v~p~e~ysv~~ 95 (468)
T PLN02748 20 GKAKVVVVMGPTGSGK----SKLAVDLASHFPVEIINADSMQVYSGLDVLTNKVPLHEQKGVPHHLLGVISPSVEFTAKD 95 (468)
T ss_pred CCCCEEEEECCCCCCH----HHHHHHHHHhcCeeEEcCchheeeCCcchhcCCCCHHHHcCCCCeeEeecCCCCcCcHHH
Confidence 4556788888888774 3466666665 55688777 3332 1111 1223456677
Q ss_pred HHHHHHHHHHHHHhcCCceEEEEEeC
Q 022960 100 EAEDLRAIVQDFCAKGRVITAIIGHS 125 (289)
Q Consensus 100 ~~~d~~~~i~~l~~~~~~~~~l~G~S 125 (289)
+..+...+|+.+...+.- .+|+|-|
T Consensus 96 F~~~A~~~I~~I~~rgk~-PIlVGGT 120 (468)
T PLN02748 96 FRDHAVPLIEEILSRNGL-PVIVGGT 120 (468)
T ss_pred HHHHHHHHHHHHHhcCCC-eEEEcCh
Confidence 788888999988776543 4555543
No 332
>COG1763 MobB Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]
Probab=52.69 E-value=30 Score=24.68 Aligned_cols=41 Identities=10% Similarity=0.186 Sum_probs=33.9
Q ss_pred cEEEEEcCCCCCCCCcchHHHHHHHHHcCccEEEEccccCC
Q 022960 46 QLVIVCHGFQSTKDRIPMVNLAAALEREGISAFRFDFSGNG 86 (289)
Q Consensus 46 ~~iv~~hG~~~~~~~~~~~~~~~~l~~~G~~v~~~d~~G~G 86 (289)
+.|+=+=|+-+++..-....+.+.|..+||+|.++-..+|+
T Consensus 2 ~~Il~ivG~k~SGKTTLie~lv~~L~~~G~rVa~iKH~hh~ 42 (161)
T COG1763 2 MKILGIVGYKNSGKTTLIEKLVRKLKARGYRVATVKHAHHD 42 (161)
T ss_pred CcEEEEEecCCCChhhHHHHHHHHHHhCCcEEEEEEecCCC
Confidence 34666677777776567888999999999999999999998
No 333
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=52.45 E-value=26 Score=23.13 Aligned_cols=31 Identities=26% Similarity=0.368 Sum_probs=24.9
Q ss_pred EEEEcCCCCCCCCcchHHHHHHHHHc-CccEEEEcc
Q 022960 48 VIVCHGFQSTKDRIPMVNLAAALERE-GISAFRFDF 82 (289)
Q Consensus 48 iv~~hG~~~~~~~~~~~~~~~~l~~~-G~~v~~~d~ 82 (289)
+|++.|.++++. ..+++.|++. |+.++..|-
T Consensus 1 vI~I~G~~gsGK----ST~a~~La~~~~~~~i~~d~ 32 (121)
T PF13207_consen 1 VIIISGPPGSGK----STLAKELAERLGFPVISMDD 32 (121)
T ss_dssp EEEEEESTTSSH----HHHHHHHHHHHTCEEEEEHH
T ss_pred CEEEECCCCCCH----HHHHHHHHHHHCCeEEEecc
Confidence 578899999884 4577788876 899988887
No 334
>PRK14729 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Provisional
Probab=51.96 E-value=1.2e+02 Score=24.28 Aligned_cols=74 Identities=9% Similarity=0.111 Sum_probs=45.5
Q ss_pred EEEEEcCCCCCCCCcchHHHHHHHHHcCccEEEEcc----ccC--CCCC-----------------CCccccchHHHHHH
Q 022960 47 LVIVCHGFQSTKDRIPMVNLAAALEREGISAFRFDF----SGN--GESE-----------------GSFLYGNYRREAED 103 (289)
Q Consensus 47 ~iv~~hG~~~~~~~~~~~~~~~~l~~~G~~v~~~d~----~G~--G~s~-----------------~~~~~~~~~~~~~d 103 (289)
.||++-|-.+++. ..++-.|++++-.++..|- +|. |... .+...++...+.++
T Consensus 5 ~ii~I~GpTasGK----S~LAl~LA~~~~eIIsaDS~QvYr~ldIgTaKpt~eE~~~i~Hhlid~~~p~e~~sv~~f~~~ 80 (300)
T PRK14729 5 KIVFIFGPTAVGK----SNILFHFPKGKAEIINVDSIQVYKEFDIASCKPSKELRKHIKHHLVDFLEPIKEYNLGIFYKE 80 (300)
T ss_pred cEEEEECCCccCH----HHHHHHHHHhCCcEEeccHHHHHCCCceecCCCCHHHHcCCCeeeeeccCCCCceeHHHHHHH
Confidence 4778888888874 3455666666457888883 332 2111 12234566677888
Q ss_pred HHHHHHHHHhcCCceEEEEEeC
Q 022960 104 LRAIVQDFCAKGRVITAIIGHS 125 (289)
Q Consensus 104 ~~~~i~~l~~~~~~~~~l~G~S 125 (289)
..++++.+...+.- .+|+|-|
T Consensus 81 a~~~i~~i~~~gk~-PilvGGT 101 (300)
T PRK14729 81 ALKIIKELRQQKKI-PIFVGGS 101 (300)
T ss_pred HHHHHHHHHHCCCC-EEEEeCc
Confidence 88888888666533 3555543
No 335
>KOG0781 consensus Signal recognition particle receptor, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=51.27 E-value=88 Score=26.94 Aligned_cols=85 Identities=12% Similarity=0.130 Sum_probs=49.5
Q ss_pred EEcCCCCCCCCcchHHHHHHHHHcCccEEEEccccCCCCCCCccccchHHHHHHHHHHHHHHHhcCCceEEEEEeChhHH
Q 022960 50 VCHGFQSTKDRIPMVNLAAALEREGISAFRFDFSGNGESEGSFLYGNYRREAEDLRAIVQDFCAKGRVITAIIGHSKGGN 129 (289)
Q Consensus 50 ~~hG~~~~~~~~~~~~~~~~l~~~G~~v~~~d~~G~G~s~~~~~~~~~~~~~~d~~~~i~~l~~~~~~~~~l~G~S~Gg~ 129 (289)
|=-|+|.+... ....-+++-...||.|+.+|-.|.-... ......+..+++. ..++.|+.+|--+=|.
T Consensus 443 fekGYgkd~a~-vak~AI~~a~~~gfDVvLiDTAGR~~~~--------~~lm~~l~k~~~~---~~pd~i~~vgealvg~ 510 (587)
T KOG0781|consen 443 FEKGYGKDAAG-VAKEAIQEARNQGFDVVLIDTAGRMHNN--------APLMTSLAKLIKV---NKPDLILFVGEALVGN 510 (587)
T ss_pred HhhhcCCChHH-HHHHHHHHHHhcCCCEEEEeccccccCC--------hhHHHHHHHHHhc---CCCceEEEehhhhhCc
Confidence 44456655432 3334445555669999999988643322 2223334444432 3677899999888776
Q ss_pred HHHHHHHh---------CCC-ccEEEE
Q 022960 130 AVLLYASK---------YND-ISIVIN 146 (289)
Q Consensus 130 ~a~~~a~~---------~p~-v~~~v~ 146 (289)
=++.-+.. .|+ ++++++
T Consensus 511 dsv~q~~~fn~al~~~~~~r~id~~~l 537 (587)
T KOG0781|consen 511 DSVDQLKKFNRALADHSTPRLIDGILL 537 (587)
T ss_pred HHHHHHHHHHHHHhcCCCccccceEEE
Confidence 66554432 244 677765
No 336
>COG0031 CysK Cysteine synthase [Amino acid transport and metabolism]
Probab=50.44 E-value=1.3e+02 Score=24.12 Aligned_cols=83 Identities=16% Similarity=0.165 Sum_probs=45.0
Q ss_pred hHHHHHHHHHc--CccEEEEccccC-----C----------CCCCCcc-ccc-hHH----HHHHHHHHHHHHHhcCCceE
Q 022960 63 MVNLAAALERE--GISAFRFDFSGN-----G----------ESEGSFL-YGN-YRR----EAEDLRAIVQDFCAKGRVIT 119 (289)
Q Consensus 63 ~~~~~~~l~~~--G~~v~~~d~~G~-----G----------~s~~~~~-~~~-~~~----~~~d~~~~i~~l~~~~~~~~ 119 (289)
..-+.++|.++ +.+++++|.-|. | .+--+.. ... +++ -.++..+.++.|..+. =
T Consensus 183 itGvar~Lk~~~p~i~iv~vdP~~S~~~~~G~g~~~i~GIG~~~ip~~~~~~~iD~v~~V~d~~A~~~~r~La~~e---G 259 (300)
T COG0031 183 ITGVARYLKERNPNVRIVAVDPEGSVLLSGGEGPHKIEGIGAGFVPENLDLDLIDEVIRVSDEEAIATARRLAREE---G 259 (300)
T ss_pred HHHHHHHHHhhCCCcEEEEECCCCCcccCCCCCCcccCCCCCCcCCcccccccCceEEEECHHHHHHHHHHHHHHh---C
Confidence 56788888776 478899887641 1 1111100 000 111 1245555555554431 2
Q ss_pred EEEEeChhHHHH--HHHHHhCCCccEEEEec
Q 022960 120 AIIGHSKGGNAV--LLYASKYNDISIVINIS 148 (289)
Q Consensus 120 ~l~G~S~Gg~~a--~~~a~~~p~v~~~v~~~ 148 (289)
.++|-|-|+.++ +.+|.+.+.=+.+|.+-
T Consensus 260 ilvG~SsGA~~~aa~~~a~~~~~g~~IVti~ 290 (300)
T COG0031 260 LLVGISSGAALAAALKLAKELPAGKTIVTIL 290 (300)
T ss_pred eeecccHHHHHHHHHHHHHhcCCCCeEEEEE
Confidence 899999999874 44555555433444443
No 337
>TIGR02764 spore_ybaN_pdaB polysaccharide deacetylase family sporulation protein PdaB. This model describes the YbaN protein family, also called PdaB and SpoVIE, of Gram-positive bacteria. Although ybaN null mutants have only a mild sporulation defect, ybaN/ytrI double mutants show drastically reducted sporulation efficiencies. This synthetic defect suggests the role of this sigmaE-controlled gene in sporulation had been masked by functional redundancy. Members of this family are homologous to a characterized polysaccharide deacetylase; the exact function this protein family is unknown.
Probab=50.33 E-value=11 Score=27.73 Aligned_cols=36 Identities=17% Similarity=0.248 Sum_probs=24.0
Q ss_pred cEEEEEcCCCCCCCC-cchHHHHHHHHHcCccEEEEc
Q 022960 46 QLVIVCHGFQSTKDR-IPMVNLAAALEREGISAFRFD 81 (289)
Q Consensus 46 ~~iv~~hG~~~~~~~-~~~~~~~~~l~~~G~~v~~~d 81 (289)
..||++|........ .....+++.|.++||.++.++
T Consensus 152 g~Iil~Hd~~~~~~t~~~l~~~i~~l~~~Gy~~vtl~ 188 (191)
T TIGR02764 152 GDIILLHASDSAKQTVKALPTIIKKLKEKGYEFVTIS 188 (191)
T ss_pred CCEEEEeCCCCcHhHHHHHHHHHHHHHHCCCEEEEHH
Confidence 458999952221110 136778889999999998774
No 338
>PRK06696 uridine kinase; Validated
Probab=50.17 E-value=30 Score=26.12 Aligned_cols=39 Identities=15% Similarity=0.245 Sum_probs=30.0
Q ss_pred CCCcEEEEEcCCCCCCCCcchHHHHHHHHHcCccEEEEc
Q 022960 43 GSKQLVIVCHGFQSTKDRIPMVNLAAALEREGISAFRFD 81 (289)
Q Consensus 43 ~~~~~iv~~hG~~~~~~~~~~~~~~~~l~~~G~~v~~~d 81 (289)
..+|.||.+-|..+++.+.+-..+++.|.+.|..++.+.
T Consensus 19 ~~~~~iI~I~G~sgsGKSTlA~~L~~~l~~~g~~v~~~~ 57 (223)
T PRK06696 19 LTRPLRVAIDGITASGKTTFADELAEEIKKRGRPVIRAS 57 (223)
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEec
Confidence 457899999999999876566677777877777777643
No 339
>TIGR02873 spore_ylxY probable sporulation protein, polysaccharide deacetylase family. Members of this protein family are most closely related to TIGR02764, a subset of polysaccharide deacetylase family proteins found in a species if and only if the species forms endospores like those of Bacillus subtilis or Clostridium tetani. This family is likewise restricted to spore-formers, but is not universal among them in having sequences with full-length matches to the model.
Probab=50.05 E-value=14 Score=29.01 Aligned_cols=34 Identities=9% Similarity=0.201 Sum_probs=26.3
Q ss_pred cEEEEEcCCCCCCCCcchHHHHHHHHHcCccEEEEc
Q 022960 46 QLVIVCHGFQSTKDRIPMVNLAAALEREGISAFRFD 81 (289)
Q Consensus 46 ~~iv~~hG~~~~~~~~~~~~~~~~l~~~G~~v~~~d 81 (289)
..||++|....+.. ....+++.|.++||.++.++
T Consensus 231 G~IILmHd~~~T~~--aL~~iI~~Lk~kGy~fvtl~ 264 (268)
T TIGR02873 231 GAMVLMHPTASSTE--GLEEMITIIKEKGYKIGTIT 264 (268)
T ss_pred CcEEEEcCCccHHH--HHHHHHHHHHHCCCEEEeHH
Confidence 46889997654443 37889999999999998874
No 340
>TIGR02884 spore_pdaA delta-lactam-biosynthetic de-N-acetylase. Muramic delta-lactam is an unusual constituent of peptidoglycan, found only in bacterial spores in the peptidoglycan wall, or spore cortex. The proteins in this family are PdaA (yfjS), a member of a larger family of polysaccharide deacetylases, and are specificially involved in delta-lactam biosynthesis. PdaA acts immediately after CwlD, an N-acetylmuramoyl-L-alanine amidase and performs a de-N-acetylation. PdaA may also perform the following transpeptidation for lactam ring formation, as heterologous expression in E. coli of CwlD and PdaA together is sufficient for delta-lactam production.
Probab=49.96 E-value=18 Score=27.39 Aligned_cols=36 Identities=11% Similarity=0.242 Sum_probs=25.9
Q ss_pred CcEEEEEcCCCCCCCCcchHHHHHHHHHcCccEEEEc
Q 022960 45 KQLVIVCHGFQSTKDRIPMVNLAAALEREGISAFRFD 81 (289)
Q Consensus 45 ~~~iv~~hG~~~~~~~~~~~~~~~~l~~~G~~v~~~d 81 (289)
...||++|....... .....+++.|.++||.++.++
T Consensus 186 ~g~IiLlHd~~~~t~-~aL~~ii~~lk~~Gy~fvtl~ 221 (224)
T TIGR02884 186 PGAILLLHAVSKDNA-EALDKIIKDLKEQGYTFKSLD 221 (224)
T ss_pred CCcEEEEECCCCCHH-HHHHHHHHHHHHCCCEEEEhH
Confidence 346899997533221 247889999999999998875
No 341
>COG0084 TatD Mg-dependent DNase [DNA replication, recombination, and repair]
Probab=49.93 E-value=60 Score=25.30 Aligned_cols=53 Identities=15% Similarity=0.157 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHHHHhcCCceEEEEEeChhHHH-HHHHHHhCCCccEEEEeccCC
Q 022960 99 REAEDLRAIVQDFCAKGRVITAIIGHSKGGNA-VLLYASKYNDISIVINISGRF 151 (289)
Q Consensus 99 ~~~~d~~~~i~~l~~~~~~~~~l~G~S~Gg~~-a~~~a~~~p~v~~~v~~~~~~ 151 (289)
...+|..++++..++.+...++++|.+....- ++.+|..+|.+-..+.+-|..
T Consensus 14 ~~~~d~~~vi~~a~~~gv~~~~~~g~~~~~~~~~~~la~~y~~v~~~~G~HP~~ 67 (256)
T COG0084 14 EFDEDRDEVIARAREAGVKKMVVVGTDLEDFKRALELAEKYPNVYAAVGVHPLD 67 (256)
T ss_pred hhcCCHHHHHHHHHHcCCcEEEEeecCHHHHHHHHHHHHhCCCeEEEEeeCCCc
Confidence 34456777888887778899999999999987 888889999877777777765
No 342
>cd04951 GT1_WbdM_like This family is most closely related to the GT1 family of glycosyltransferases and is named after WbdM in Escherichia coli. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have
Probab=49.22 E-value=1.4e+02 Score=24.03 Aligned_cols=38 Identities=18% Similarity=0.286 Sum_probs=24.4
Q ss_pred EEEEEcCCCCCCCCcchHHHHHHHHHcCccEEEEcccc
Q 022960 47 LVIVCHGFQSTKDRIPMVNLAAALEREGISAFRFDFSG 84 (289)
Q Consensus 47 ~iv~~hG~~~~~~~~~~~~~~~~l~~~G~~v~~~d~~G 84 (289)
.+++++|.+..+.......+++.|.++|+.|..+...+
T Consensus 2 il~~~~~~~~gG~~~~~~~l~~~L~~~g~~v~v~~~~~ 39 (360)
T cd04951 2 ILYVITGLGLGGAEKQVVDLADQFVAKGHQVAIISLTG 39 (360)
T ss_pred eEEEecCCCCCCHHHHHHHHHHhcccCCceEEEEEEeC
Confidence 34555665433322346778899988899988776544
No 343
>COG1709 Predicted transcriptional regulator [Transcription]
Probab=48.83 E-value=69 Score=24.10 Aligned_cols=36 Identities=19% Similarity=0.213 Sum_probs=26.6
Q ss_pred CCCcEEEEEcCCCCCCCCcchHHHHHHHHHc-CccEEEEcc
Q 022960 43 GSKQLVIVCHGFQSTKDRIPMVNLAAALERE-GISAFRFDF 82 (289)
Q Consensus 43 ~~~~~iv~~hG~~~~~~~~~~~~~~~~l~~~-G~~v~~~d~ 82 (289)
+-+|.+|++||..... ..+++-.+++. |+..++-.+
T Consensus 192 ~lKP~aVVlHGi~~~~----vD~lAikiAe~e~IpLvvT~~ 228 (241)
T COG1709 192 PLKPAAVVLHGIPPDN----VDELAIKIAEIERIPLVVTTM 228 (241)
T ss_pred CCCccEEEEecCCccc----hhHHHHHHHhhcCCceEEecC
Confidence 4688999999988775 56788888876 566555443
No 344
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=48.65 E-value=18 Score=27.29 Aligned_cols=33 Identities=18% Similarity=0.164 Sum_probs=24.0
Q ss_pred CCcEEEEEcCCCCCCCCcchHHHHHHHHHcCccEEEEccc
Q 022960 44 SKQLVIVCHGFQSTKDRIPMVNLAAALEREGISAFRFDFS 83 (289)
Q Consensus 44 ~~~~iv~~hG~~~~~~~~~~~~~~~~l~~~G~~v~~~d~~ 83 (289)
+.+.=|+++|-|-+.+ +..|+++|+.|+.+|+-
T Consensus 36 ~~~~rvLvPgCG~g~D-------~~~La~~G~~VvGvDls 68 (218)
T PF05724_consen 36 KPGGRVLVPGCGKGYD-------MLWLAEQGHDVVGVDLS 68 (218)
T ss_dssp STSEEEEETTTTTSCH-------HHHHHHTTEEEEEEES-
T ss_pred CCCCeEEEeCCCChHH-------HHHHHHCCCeEEEEecC
Confidence 3344578888887653 35778889999999985
No 345
>PRK00091 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Reviewed
Probab=48.42 E-value=1.3e+02 Score=24.19 Aligned_cols=73 Identities=22% Similarity=0.188 Sum_probs=41.4
Q ss_pred CcEEEEEcCCCCCCCCcchHHHHHHHHHc-CccEEEEccc----c--CCCCCC-----------------CccccchHHH
Q 022960 45 KQLVIVCHGFQSTKDRIPMVNLAAALERE-GISAFRFDFS----G--NGESEG-----------------SFLYGNYRRE 100 (289)
Q Consensus 45 ~~~iv~~hG~~~~~~~~~~~~~~~~l~~~-G~~v~~~d~~----G--~G~s~~-----------------~~~~~~~~~~ 100 (289)
.+.+|++-|-.+++. ..++..|++. +..++..|-. + +|.... +....+...+
T Consensus 3 ~~~~i~i~GptgsGK----t~la~~la~~~~~~iis~Ds~Qvy~~l~i~Takp~~~E~~gv~hhlid~~~~~~~~s~~~f 78 (307)
T PRK00091 3 KPKVIVIVGPTASGK----TALAIELAKRLNGEIISADSMQVYRGMDIGTAKPTAEERAGVPHHLIDILDPTESYSVADF 78 (307)
T ss_pred CceEEEEECCCCcCH----HHHHHHHHHhCCCcEEeccccceeecccccCCCCCHHHHcCccEEeecccChhhcccHHHH
Confidence 346788888888873 4566677665 5667777653 1 111110 0112344556
Q ss_pred HHHHHHHHHHHHhcCCceEEE
Q 022960 101 AEDLRAIVQDFCAKGRVITAI 121 (289)
Q Consensus 101 ~~d~~~~i~~l~~~~~~~~~l 121 (289)
.++....++.+...+..++++
T Consensus 79 ~~~a~~~i~~i~~~gk~pIlv 99 (307)
T PRK00091 79 QRDALAAIADILARGKLPILV 99 (307)
T ss_pred HHHHHHHHHHHHhCCCCEEEE
Confidence 677777777766555443443
No 346
>TIGR02026 BchE magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase. This model respresents the cobalamin-dependent oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under anaerobic conditions. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under anaerobic conditions (a separate enzyme, AcsF, acts under aerobic conditions). This model identifies two clades of sequences, one from photosynthetic, non-cyanobacterial bacteria and another including Synechocystis and several non-photosynthetic bacteria. The function of the Synechocystis gene is supported by gene clustering with other photosynthetic genes, so the purpose of the gene in the non-photosynthetic bacteria is uncertain. Note that homologs of this gene are not found in plants which rely solely on the aerobic cyclase.
Probab=48.33 E-value=1.9e+02 Score=25.27 Aligned_cols=85 Identities=7% Similarity=-0.111 Sum_probs=40.9
Q ss_pred HHHHHHHHHcC-ccEEEEccccCCCCCC---------Ccc---ccchHHHHHHHHHHHHHHHhcCCceEEEEEeChhHHH
Q 022960 64 VNLAAALEREG-ISAFRFDFSGNGESEG---------SFL---YGNYRREAEDLRAIVQDFCAKGRVITAIIGHSKGGNA 130 (289)
Q Consensus 64 ~~~~~~l~~~G-~~v~~~d~~G~G~s~~---------~~~---~~~~~~~~~d~~~~i~~l~~~~~~~~~l~G~S~Gg~~ 130 (289)
..++..|.+.| +.|-.+|......+.. .+. ...+........++++.+++..++-.+++|-..-...
T Consensus 26 ~~lAa~L~~~G~~~V~iiD~~~~~~~~~~~~~~l~~~~pdvVgis~~t~~~~~a~~~~~~~k~~~P~~~iV~GG~h~t~~ 105 (497)
T TIGR02026 26 AYIGGALLDAGYHDVTFLDAMTGPLTDEKLVERLRAHCPDLVLITAITPAIYIACETLKFARERLPNAIIVLGGIHPTFM 105 (497)
T ss_pred HHHHHHHHhcCCcceEEecccccCCCHHHHHHHHHhcCcCEEEEecCcccHHHHHHHHHHHHHHCCCCEEEEcCCCcCcC
Confidence 45666777889 5899998765433310 010 0111112233444555555444444455554433333
Q ss_pred HHHHHHhCCCccEEEEec
Q 022960 131 VLLYASKYNDISIVINIS 148 (289)
Q Consensus 131 a~~~a~~~p~v~~~v~~~ 148 (289)
.-.+....|.++.+|.-.
T Consensus 106 ~~~~l~~~p~vD~Vv~GE 123 (497)
T TIGR02026 106 FHQVLTEAPWIDFIVRGE 123 (497)
T ss_pred HHHHHhcCCCccEEEeCC
Confidence 333334445566555443
No 347
>cd07212 Pat_PNPLA9 Patatin-like phospholipase domain containing protein 9. PNPLA9 is a Ca-independent phospholipase that catalyzes the hydrolysis of glycerophospholipids at the sn-2 position. PNPLA9 is also known as PLA2G6 (phospholipase A2 group VI) or iPLA2beta. PLA2G6 is stimulated by ATP and inhibited by bromoenol lactone (BEL). In humans, PNPLA9 in expressed ubiquitously and is involved in signal transduction, cell proliferation, and apoptotic cell death. Mutations in human PLA2G6 leads to infantile neuroaxonal dystrophy (INAD) and idiopathic neurodegeneration with brain iron accumulation (NBIA). This family includes PLA2G6 from Homo sapiens and Rattus norvegicus.
Probab=48.28 E-value=17 Score=29.28 Aligned_cols=19 Identities=32% Similarity=0.277 Sum_probs=16.9
Q ss_pred EEEEeChhHHHHHHHHHhC
Q 022960 120 AIIGHSKGGNAVLLYASKY 138 (289)
Q Consensus 120 ~l~G~S~Gg~~a~~~a~~~ 138 (289)
.+.|.|+||.+|+.++...
T Consensus 35 ~i~GTStGgiIA~~la~g~ 53 (312)
T cd07212 35 WIAGTSTGGILALALLHGK 53 (312)
T ss_pred EEEeeChHHHHHHHHHcCC
Confidence 7999999999999998744
No 348
>cd03146 GAT1_Peptidase_E Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E. Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E. This group contains proteins similar to the aspartyl dipeptidases Salmonella typhimurium peptidase E and Xenopus laevis peptidase E. In bacteria peptidase E is believed to play a role in degrading peptides generated by intracellular protein breakdown or imported into the cell as nutrient sources. Peptidase E uniquely hydrolyses only Asp-X dipeptides (where X is any amino acid), and one tripeptide Asp-Gly-Gly. Peptidase E is believed to be a serine peptidase having a Ser-His-Glu catalytic triad which differs from the Cys-His-Glu catalytic triad typical of GATase1 domains by having a Ser in place of the reactive Cys at the nucleophile elbow. Xenopus PepE is developmentally regulated in response to thyroid hormone and, it is thought to play a role in apoptosis during tail reabsorption.
Probab=48.26 E-value=87 Score=23.49 Aligned_cols=40 Identities=15% Similarity=0.175 Sum_probs=29.1
Q ss_pred CCCcEEEEEcCCCCCCCCcchHHHHHHHHHc-CccEEEEccc
Q 022960 43 GSKQLVIVCHGFQSTKDRIPMVNLAAALERE-GISAFRFDFS 83 (289)
Q Consensus 43 ~~~~~iv~~hG~~~~~~~~~~~~~~~~l~~~-G~~v~~~d~~ 83 (289)
+..+.|+|++-...... .+...+.+.|.+. |+.+..++..
T Consensus 29 ~~~~~i~~IptAs~~~~-~~~~~~~~a~~~l~G~~~~~~~~~ 69 (212)
T cd03146 29 KARPKVLFVPTASGDRD-EYTARFYAAFESLRGVEVSHLHLF 69 (212)
T ss_pred cCCCeEEEECCCCCCHH-HHHHHHHHHHhhccCcEEEEEecc
Confidence 35678999988777543 2466677888888 9988887754
No 349
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=48.02 E-value=1.4e+02 Score=23.60 Aligned_cols=69 Identities=14% Similarity=0.184 Sum_probs=37.6
Q ss_pred HHcCccEEEEccccCCCCCCCccccchHHHHHHHHHHHHHHH---hcCCceEEEEEeChhHHHHHHHHHhCCC---ccEE
Q 022960 71 EREGISAFRFDFSGNGESEGSFLYGNYRREAEDLRAIVQDFC---AKGRVITAIIGHSKGGNAVLLYASKYND---ISIV 144 (289)
Q Consensus 71 ~~~G~~v~~~d~~G~G~s~~~~~~~~~~~~~~d~~~~i~~l~---~~~~~~~~l~G~S~Gg~~a~~~a~~~p~---v~~~ 144 (289)
..++|.++.+|-+|....+ ....+.+..+.+.+. ......++++--+.-|.-++..+..+-+ +.++
T Consensus 151 ~~~~~D~ViIDT~G~~~~d--------~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~~~~~~~~~~~f~~~~~~~g~ 222 (272)
T TIGR00064 151 KARNIDVVLIDTAGRLQNK--------VNLMDELKKIKRVIKKVDKDAPDEVLLVLDATTGQNALEQAKVFNEAVGLTGI 222 (272)
T ss_pred HHCCCCEEEEeCCCCCcch--------HHHHHHHHHHHHHHhcccCCCCceEEEEEECCCCHHHHHHHHHHHhhCCCCEE
Confidence 3467999999999865432 333455555555443 1124445555555555544444444322 6666
Q ss_pred EEe
Q 022960 145 INI 147 (289)
Q Consensus 145 v~~ 147 (289)
|+-
T Consensus 223 IlT 225 (272)
T TIGR00064 223 ILT 225 (272)
T ss_pred EEE
Confidence 653
No 350
>CHL00175 minD septum-site determining protein; Validated
Probab=47.89 E-value=33 Score=27.01 Aligned_cols=40 Identities=15% Similarity=0.261 Sum_probs=31.3
Q ss_pred CCcEEEEEcCCCCCCCCcchHHHHHHHHHcCccEEEEccc
Q 022960 44 SKQLVIVCHGFQSTKDRIPMVNLAAALEREGISAFRFDFS 83 (289)
Q Consensus 44 ~~~~iv~~hG~~~~~~~~~~~~~~~~l~~~G~~v~~~d~~ 83 (289)
...+|.+..|-||.+.+..-..++..|++.|++|+.+|.-
T Consensus 14 ~~~vi~v~s~KGGvGKTt~a~nLA~~La~~g~~vlliD~D 53 (281)
T CHL00175 14 MSRIIVITSGKGGVGKTTTTANLGMSIARLGYRVALIDAD 53 (281)
T ss_pred CceEEEEEcCCCCCcHHHHHHHHHHHHHhCCCeEEEEeCC
Confidence 3457778887887776555677888999999999999874
No 351
>COG1255 Uncharacterized protein conserved in archaea [Function unknown]
Probab=47.76 E-value=24 Score=23.41 Aligned_cols=22 Identities=18% Similarity=0.362 Sum_probs=19.7
Q ss_pred chHHHHHHHHHcCccEEEEccc
Q 022960 62 PMVNLAAALEREGISAFRFDFS 83 (289)
Q Consensus 62 ~~~~~~~~l~~~G~~v~~~d~~ 83 (289)
++..+++.|+++|+.|++.|.-
T Consensus 24 ~~~~VA~~L~e~g~dv~atDI~ 45 (129)
T COG1255 24 FFLDVAKRLAERGFDVLATDIN 45 (129)
T ss_pred hHHHHHHHHHHcCCcEEEEecc
Confidence 4788999999999999999975
No 352
>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB. This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.
Probab=47.34 E-value=26 Score=24.77 Aligned_cols=38 Identities=13% Similarity=0.162 Sum_probs=28.2
Q ss_pred EEEcCCCCCCCCcchHHHHHHHHHcCccEEEEccccCC
Q 022960 49 IVCHGFQSTKDRIPMVNLAAALEREGISAFRFDFSGNG 86 (289)
Q Consensus 49 v~~hG~~~~~~~~~~~~~~~~l~~~G~~v~~~d~~G~G 86 (289)
+.+-|..+++.+.....+...|.++|++|.++..-+|+
T Consensus 2 i~i~G~~gsGKTtl~~~l~~~l~~~G~~V~viK~~~~~ 39 (155)
T TIGR00176 2 LQIVGPKNSGKTTLIERLVKALKARGYRVATIKHDHHD 39 (155)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEeccccc
Confidence 45557777665555678888888889999999876554
No 353
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=47.18 E-value=1.5e+02 Score=24.90 Aligned_cols=69 Identities=14% Similarity=0.155 Sum_probs=38.8
Q ss_pred HHHHHcCccEEEEccccCCCCCCCccccchHHHHHHHHHHHHHHHhcCCceEEEEEeChhHHHHHHHHHhCCC---ccEE
Q 022960 68 AALEREGISAFRFDFSGNGESEGSFLYGNYRREAEDLRAIVQDFCAKGRVITAIIGHSKGGNAVLLYASKYND---ISIV 144 (289)
Q Consensus 68 ~~l~~~G~~v~~~d~~G~G~s~~~~~~~~~~~~~~d~~~~i~~l~~~~~~~~~l~G~S~Gg~~a~~~a~~~p~---v~~~ 144 (289)
+.+.+.+|.++.+|-.|.- ... ..+.+.+.++.+.+ .++.+++|=-+.=|..|...|..+.+ |.++
T Consensus 177 ~~fKke~fdvIIvDTSGRh-----~qe---~sLfeEM~~v~~ai---~Pd~vi~VmDasiGQaae~Qa~aFk~~vdvg~v 245 (483)
T KOG0780|consen 177 DRFKKENFDVIIVDTSGRH-----KQE---ASLFEEMKQVSKAI---KPDEIIFVMDASIGQAAEAQARAFKETVDVGAV 245 (483)
T ss_pred HHHHhcCCcEEEEeCCCch-----hhh---HHHHHHHHHHHhhc---CCCeEEEEEeccccHhHHHHHHHHHHhhccceE
Confidence 4466668899999876521 111 23345555555555 56666655555555555555555543 6666
Q ss_pred EEe
Q 022960 145 INI 147 (289)
Q Consensus 145 v~~ 147 (289)
|+-
T Consensus 246 IlT 248 (483)
T KOG0780|consen 246 ILT 248 (483)
T ss_pred EEE
Confidence 653
No 354
>PRK03846 adenylylsulfate kinase; Provisional
Probab=46.48 E-value=35 Score=25.19 Aligned_cols=38 Identities=24% Similarity=0.352 Sum_probs=26.9
Q ss_pred CCcEEEEEcCCCCCCCCcchHHHHHHHHHcCccEEEEc
Q 022960 44 SKQLVIVCHGFQSTKDRIPMVNLAAALEREGISAFRFD 81 (289)
Q Consensus 44 ~~~~iv~~hG~~~~~~~~~~~~~~~~l~~~G~~v~~~d 81 (289)
.+|.+|.+.|..|++.+.....+...|...|+.++.+|
T Consensus 22 ~~~~~i~i~G~~GsGKSTla~~l~~~l~~~~~~~~~ld 59 (198)
T PRK03846 22 HKGVVLWFTGLSGSGKSTVAGALEEALHELGVSTYLLD 59 (198)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHhCCCCEEEEc
Confidence 56778888898887754445566666666677777776
No 355
>cd02037 MRP-like MRP (Multiple Resistance and pH adaptation) is a homologue of the Fer4_NifH superfamily. Like the other members of the superfamily, MRP contains a ATP-binding domain at the N-termini. It is found in bacteria as a membrane-spanning protein and functions as a Na+/H+ antiporter.
Probab=46.40 E-value=35 Score=24.33 Aligned_cols=37 Identities=27% Similarity=0.193 Sum_probs=26.8
Q ss_pred EEEEcCCCCCCCCcchHHHHHHHHHcCccEEEEcccc
Q 022960 48 VIVCHGFQSTKDRIPMVNLAAALEREGISAFRFDFSG 84 (289)
Q Consensus 48 iv~~hG~~~~~~~~~~~~~~~~l~~~G~~v~~~d~~G 84 (289)
|.+..+-||.+.+..-..++..|++.|++|+.+|.--
T Consensus 2 i~v~s~kgG~GKTt~a~~LA~~la~~g~~vllvD~D~ 38 (169)
T cd02037 2 IAVMSGKGGVGKSTVAVNLALALAKLGYKVGLLDADI 38 (169)
T ss_pred EEEecCCCcCChhHHHHHHHHHHHHcCCcEEEEeCCC
Confidence 4555566666554456778889999999999998643
No 356
>cd01521 RHOD_PspE2 Member of the Rhodanese Homology Domain superfamily. This CD includes the putative rhodanese-like protein, Psp2, of Yersinia pestis biovar Medievalis and other similar uncharacterized proteins.
Probab=46.38 E-value=66 Score=20.90 Aligned_cols=34 Identities=21% Similarity=0.290 Sum_probs=21.2
Q ss_pred CCCcEEEEEcCCCCCCCCcchHHHHHHHHHcCccEEEE
Q 022960 43 GSKQLVIVCHGFQSTKDRIPMVNLAAALEREGISAFRF 80 (289)
Q Consensus 43 ~~~~~iv~~hG~~~~~~~~~~~~~~~~l~~~G~~v~~~ 80 (289)
.+.++||++.+..... -...+..|...||.|..+
T Consensus 63 ~~~~vvvyc~~g~~~~----s~~~a~~l~~~G~~v~~l 96 (110)
T cd01521 63 KEKLFVVYCDGPGCNG----ATKAALKLAELGFPVKEM 96 (110)
T ss_pred CCCeEEEEECCCCCch----HHHHHHHHHHcCCeEEEe
Confidence 3567777776543221 345667788889986544
No 357
>PTZ00445 p36-lilke protein; Provisional
Probab=46.32 E-value=95 Score=23.43 Aligned_cols=64 Identities=13% Similarity=0.052 Sum_probs=39.8
Q ss_pred hHHHHHHHHHcCccEEEEccccC------CCCCCCc-ccc-chHHHHHHHHHHHHHHHhcCCceEEEEEeChh
Q 022960 63 MVNLAAALEREGISAFRFDFSGN------GESEGSF-LYG-NYRREAEDLRAIVQDFCAKGRVITAIIGHSKG 127 (289)
Q Consensus 63 ~~~~~~~l~~~G~~v~~~d~~G~------G~s~~~~-~~~-~~~~~~~d~~~~i~~l~~~~~~~~~l~G~S~G 127 (289)
-..+.+.|.+.|+.+++.|+--. |....+. ... -......++..++..+.+.++ ++.|+-+|--
T Consensus 31 ~~~~v~~L~~~GIk~Va~D~DnTlI~~HsgG~~~~~~~~~~~~~~~tpefk~~~~~l~~~~I-~v~VVTfSd~ 102 (219)
T PTZ00445 31 ADKFVDLLNECGIKVIASDFDLTMITKHSGGYIDPDNDDIRVLTSVTPDFKILGKRLKNSNI-KISVVTFSDK 102 (219)
T ss_pred HHHHHHHHHHcCCeEEEecchhhhhhhhcccccCCCcchhhhhccCCHHHHHHHHHHHHCCC-eEEEEEccch
Confidence 46678889999999999998632 1111110 000 011223667778888876665 5899999854
No 358
>TIGR03371 cellulose_yhjQ cellulose synthase operon protein YhjQ. Members of this family are the YhjQ protein, found immediately upsteam of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae. In several species it is seen clearly as part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm (PubMed:16930487), based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=46.16 E-value=29 Score=26.49 Aligned_cols=40 Identities=18% Similarity=0.184 Sum_probs=29.6
Q ss_pred EEEEEcCCCCCCCCcchHHHHHHHHHcCccEEEEccccCC
Q 022960 47 LVIVCHGFQSTKDRIPMVNLAAALEREGISAFRFDFSGNG 86 (289)
Q Consensus 47 ~iv~~hG~~~~~~~~~~~~~~~~l~~~G~~v~~~d~~G~G 86 (289)
.|.+..+-||.+.+..-..++..|++.|++|+.+|.-..|
T Consensus 3 iI~v~s~KGGvGKTt~a~nla~~la~~g~~VlliD~D~q~ 42 (246)
T TIGR03371 3 VIAIVGVKGGVGKTTLTANLASALKLLGEPVLAIDLDPQN 42 (246)
T ss_pred EEEEEeCCCCccHHHHHHHHHHHHHhCCCcEEEEeCCCcc
Confidence 4566666666655445677889999999999999986544
No 359
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=46.03 E-value=1.2e+02 Score=23.83 Aligned_cols=58 Identities=9% Similarity=0.107 Sum_probs=38.5
Q ss_pred hHHHHHHHHHcCcc-EEEEccccCCCCCCCccccchHHHHHHHHHHHHHHHhcCCceEEEEEeChhHHHHHHHHHh
Q 022960 63 MVNLAAALEREGIS-AFRFDFSGNGESEGSFLYGNYRREAEDLRAIVQDFCAKGRVITAIIGHSKGGNAVLLYASK 137 (289)
Q Consensus 63 ~~~~~~~l~~~G~~-v~~~d~~G~G~s~~~~~~~~~~~~~~d~~~~i~~l~~~~~~~~~l~G~S~Gg~~a~~~a~~ 137 (289)
...+.+.+++.|.. ++.+|+| .++...+++.+++.+...+.++.-..----...++..
T Consensus 108 ~e~F~~~~~~aGvdgviipDLP-----------------~ee~~~~~~~~~~~gi~~I~lv~PtT~~eri~~i~~~ 166 (263)
T CHL00200 108 INKFIKKISQAGVKGLIIPDLP-----------------YEESDYLISVCNLYNIELILLIAPTSSKSRIQKIARA 166 (263)
T ss_pred HHHHHHHHHHcCCeEEEecCCC-----------------HHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHh
Confidence 56788888888877 7888987 2334455555566688888888777654333343433
No 360
>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....
Probab=46.03 E-value=35 Score=22.78 Aligned_cols=32 Identities=25% Similarity=0.323 Sum_probs=25.5
Q ss_pred eEEEEE-eChhHHHHHHHHHhCCCccEEEEecc
Q 022960 118 ITAIIG-HSKGGNAVLLYASKYNDISIVINISG 149 (289)
Q Consensus 118 ~~~l~G-~S~Gg~~a~~~a~~~p~v~~~v~~~~ 149 (289)
|+.|+| ..+.|.-.+.++..+|++.-+.+++.
T Consensus 1 rV~IvGAtG~vG~~l~~lL~~hp~~e~~~~~~~ 33 (121)
T PF01118_consen 1 RVAIVGATGYVGRELLRLLAEHPDFELVALVSS 33 (121)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTSTEEEEEEEES
T ss_pred CEEEECCCCHHHHHHHHHHhcCCCccEEEeeee
Confidence 588999 89999999999999998665555543
No 361
>PLN02733 phosphatidylcholine-sterol O-acyltransferase
Probab=45.42 E-value=17 Score=30.88 Aligned_cols=51 Identities=16% Similarity=0.127 Sum_probs=33.5
Q ss_pred EEEeCCCCccChhhHHHHHhhCCCcEEEEEcCCCcccccCchHHHHHHHHHHHh
Q 022960 216 TIHGTKDKMVPAEDALEFDKFIPNHKLHIIEGADHEFTSHQDELASLVIQFIKA 269 (289)
Q Consensus 216 ~i~g~~D~~~~~~~~~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~i~~fl~~ 269 (289)
+++|..|..|+.+.++... +..+....++ +.|..+...+++.+.|.+||..
T Consensus 371 ~~y~dGDGTV~~~S~~~~~--~~~~~~~~l~-~~H~~il~n~~v~~~I~~fL~~ 421 (440)
T PLN02733 371 YTYVDGDGTVPVESAKADG--LNAVARVGVP-GDHRGILRDEHVFRILKHWLKV 421 (440)
T ss_pred EEEeCCCCEEecchhhccC--ccccccccCC-chHHHHhcCHHHHHHHHHHHhc
Confidence 4455666777666655321 2233444555 7898777788999999999953
No 362
>cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell. The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer.
Probab=45.34 E-value=30 Score=24.74 Aligned_cols=36 Identities=22% Similarity=0.295 Sum_probs=25.6
Q ss_pred EEEEcCCCCCCCCcchHHHHHHHHHcCccEEEEccc
Q 022960 48 VIVCHGFQSTKDRIPMVNLAAALEREGISAFRFDFS 83 (289)
Q Consensus 48 iv~~hG~~~~~~~~~~~~~~~~l~~~G~~v~~~d~~ 83 (289)
|.+..+-||.+.+..-..++..|+++|+.|+.+|.-
T Consensus 2 i~v~~~kgG~GKtt~a~~la~~l~~~g~~vllvD~D 37 (179)
T cd02036 2 IVVTSGKGGVGKTTTTANLGTALAQLGYKVVLIDAD 37 (179)
T ss_pred EEEeeCCCCCCHHHHHHHHHHHHHhCCCeEEEEeCC
Confidence 445555555554445677889999999999999864
No 363
>cd07211 Pat_PNPLA8 Patatin-like phospholipase domain containing protein 8. PNPLA8 is a Ca-independent myocardial phospholipase which maintains mitochondrial integrity. PNPLA8 is also known as iPLA2-gamma. In humans, it is predominantly expressed in heart tissue. iPLA2-gamma can catalyze both phospholipase A1 and A2 reactions (PLA1 and PLA2 respectively). This family includes PNPLA8 (iPLA2-gamma) from Homo sapiens and iPLA2-2 from Mus musculus.
Probab=45.09 E-value=28 Score=27.87 Aligned_cols=17 Identities=29% Similarity=0.300 Sum_probs=15.5
Q ss_pred EEEEeChhHHHHHHHHH
Q 022960 120 AIIGHSKGGNAVLLYAS 136 (289)
Q Consensus 120 ~l~G~S~Gg~~a~~~a~ 136 (289)
.+.|.|.||.+|+.++.
T Consensus 44 li~GTStGgiiA~~la~ 60 (308)
T cd07211 44 YICGVSTGAILAFLLGL 60 (308)
T ss_pred EEEecChhHHHHHHHhc
Confidence 69999999999999876
No 364
>PRK13230 nitrogenase reductase-like protein; Reviewed
Probab=45.04 E-value=36 Score=26.74 Aligned_cols=42 Identities=17% Similarity=0.195 Sum_probs=31.2
Q ss_pred EEEEEcCCCCCCCCcchHHHHHHHHHcCccEEEEccccCCCCC
Q 022960 47 LVIVCHGFQSTKDRIPMVNLAAALEREGISAFRFDFSGNGESE 89 (289)
Q Consensus 47 ~iv~~hG~~~~~~~~~~~~~~~~l~~~G~~v~~~d~~G~G~s~ 89 (289)
+|.++ |=||.+.+..-..++..|++.|++|+.+|+--.|...
T Consensus 3 ~i~~~-gKGGVGKTT~a~nLA~~La~~G~rVLliD~Dpq~n~t 44 (279)
T PRK13230 3 KFCFY-GKGGIGKSTTVCNIAAALAESGKKVLVVGCDPKADCT 44 (279)
T ss_pred EEEEE-CCCCCcHHHHHHHHHHHHHhCCCEEEEEeeCCccccc
Confidence 45666 7777665545678899999999999999986555443
No 365
>PLN02924 thymidylate kinase
Probab=45.01 E-value=40 Score=25.51 Aligned_cols=41 Identities=22% Similarity=0.344 Sum_probs=32.7
Q ss_pred CCcEEEEEcCCCCCCCCcchHHHHHHHHHcCccEEEEcccc
Q 022960 44 SKQLVIVCHGFQSTKDRIPMVNLAAALEREGISAFRFDFSG 84 (289)
Q Consensus 44 ~~~~iv~~hG~~~~~~~~~~~~~~~~l~~~G~~v~~~d~~G 84 (289)
+...+|.+=|..|++.+.....+.+.|...|+.|+....|+
T Consensus 14 ~~g~~IviEGiDGsGKsTq~~~L~~~l~~~g~~v~~~~ep~ 54 (220)
T PLN02924 14 SRGALIVLEGLDRSGKSTQCAKLVSFLKGLGVAAELWRFPD 54 (220)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCCceeeeCCC
Confidence 45578888898888766567788899998999998877775
No 366
>PF14253 AbiH: Bacteriophage abortive infection AbiH
Probab=44.96 E-value=14 Score=28.88 Aligned_cols=16 Identities=31% Similarity=0.210 Sum_probs=13.3
Q ss_pred CCceEEEEEeChhHHH
Q 022960 115 GRVITAIIGHSKGGNA 130 (289)
Q Consensus 115 ~~~~~~l~G~S~Gg~~ 130 (289)
+...|+++|||+|..=
T Consensus 233 ~i~~I~i~GhSl~~~D 248 (270)
T PF14253_consen 233 DIDEIIIYGHSLGEVD 248 (270)
T ss_pred CCCEEEEEeCCCchhh
Confidence 5678999999999753
No 367
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=44.81 E-value=98 Score=24.25 Aligned_cols=59 Identities=10% Similarity=0.139 Sum_probs=38.0
Q ss_pred hHHHHHHHHHcCcc-EEEEccccCCCCCCCccccchHHHHHHHHHHHHHHHhcCCceEEEEEeChhHHHHHHHHHhC
Q 022960 63 MVNLAAALEREGIS-AFRFDFSGNGESEGSFLYGNYRREAEDLRAIVQDFCAKGRVITAIIGHSKGGNAVLLYASKY 138 (289)
Q Consensus 63 ~~~~~~~l~~~G~~-v~~~d~~G~G~s~~~~~~~~~~~~~~d~~~~i~~l~~~~~~~~~l~G~S~Gg~~a~~~a~~~ 138 (289)
...+.+.+.+.|.. ++.+|+| .+..+++....+ +.+++.+.++.-+..--..-.++...
T Consensus 111 ie~F~~~~~~~GvdGlivpDLP--------------~ee~~~~~~~~~---~~gi~~I~lvaPtt~~~rl~~i~~~a 170 (265)
T COG0159 111 IEKFLRRAKEAGVDGLLVPDLP--------------PEESDELLKAAE---KHGIDPIFLVAPTTPDERLKKIAEAA 170 (265)
T ss_pred HHHHHHHHHHcCCCEEEeCCCC--------------hHHHHHHHHHHH---HcCCcEEEEeCCCCCHHHHHHHHHhC
Confidence 56677788888877 8899998 344445554444 44888888886666544444444433
No 368
>TIGR02816 pfaB_fam PfaB family protein. The protein PfaB is part of four gene locus, similar to polyketide biosynthesis systems, responsible for omega-3 polyunsaturated fatty acid biosynthesis in several high pressure and/or cold-adapted bacteria. The fairly permissive trusted cutoff set for this model allows detection of homologs encoded near homologs to other proteins of the locus: PfaA, PfaC, and/or PfaD. The likely role in every case is either polyunsaturated fatty acid or polyketide biosynthesis.
Probab=44.77 E-value=32 Score=30.12 Aligned_cols=25 Identities=16% Similarity=0.082 Sum_probs=21.2
Q ss_pred cCCceEEEEEeChhHHHHHHHHHhC
Q 022960 114 KGRVITAIIGHSKGGNAVLLYASKY 138 (289)
Q Consensus 114 ~~~~~~~l~G~S~Gg~~a~~~a~~~ 138 (289)
.++++-.++|||+|=+.|+..|.-.
T Consensus 262 ~GI~Pdav~GHSlGE~aAa~aAGvl 286 (538)
T TIGR02816 262 FAIKPDFALGYSKGEASMWASLGVW 286 (538)
T ss_pred cCCCCCEEeecCHHHHHHHHHhCCC
Confidence 3788889999999999998877654
No 369
>PRK09273 hypothetical protein; Provisional
Probab=44.54 E-value=1.3e+02 Score=22.55 Aligned_cols=78 Identities=13% Similarity=0.144 Sum_probs=41.8
Q ss_pred chHHHHHHHHHcCccEEEEccccCCCCCCCccccchHHHHHHHHHHHHHHHhcCCceEEEEEeChhHHHHHHHHHhCCCc
Q 022960 62 PMVNLAAALEREGISAFRFDFSGNGESEGSFLYGNYRREAEDLRAIVQDFCAKGRVITAIIGHSKGGNAVLLYASKYNDI 141 (289)
Q Consensus 62 ~~~~~~~~l~~~G~~v~~~d~~G~G~s~~~~~~~~~~~~~~d~~~~i~~l~~~~~~~~~l~G~S~Gg~~a~~~a~~~p~v 141 (289)
.+..+.+.|.+.||.|+-+-.- .......+|.+.+.-+...+. +...+ ..+++-..|-.+++ .|.++|.|
T Consensus 18 i~~~L~~~L~~~G~eV~D~G~~-----~~~~~s~dYpd~a~~vA~~V~---~g~~d-~GIliCGTGiG~si-AANK~pGI 87 (211)
T PRK09273 18 IYEALKKVADPKGHEVFNYGMY-----DEEDHQLTYVQNGIMASILLN---SKAVD-FVVTGCGTGQGAML-ALNSFPGV 87 (211)
T ss_pred HHHHHHHHHHHCCCEEEEeCCC-----CCCCCCCChHHHHHHHHHHHH---cCCCC-EEEEEcCcHHHHHH-HHhcCCCe
Confidence 4677888999999988654321 111112455555544444442 22233 34444333333333 36678887
Q ss_pred cEEEEecc
Q 022960 142 SIVINISG 149 (289)
Q Consensus 142 ~~~v~~~~ 149 (289)
.+.++.++
T Consensus 88 raalc~d~ 95 (211)
T PRK09273 88 VCGYCIDP 95 (211)
T ss_pred EEEEeCCH
Confidence 77766664
No 370
>cd02034 CooC The accessory protein CooC, which contains a nucleotide-binding domain (P-loop) near the N-terminus, participates in the maturation of the nickel center of carbon monoxide dehydrogenase (CODH). CODH from Rhodospirillum rubrum catalyzes the reversible oxidation of CO to CO2. CODH contains a nickel-iron-sulfur cluster (C-center) and an iron-sulfur cluster (B-center). CO oxidation occurs at the C-center. Three accessory proteins encoded by cooCTJ genes are involved in nickel incorporation into a nickel site. CooC functions as a nickel insertase that mobilizes nickel to apoCODH using energy released from ATP hydrolysis. CooC is a homodimer and has NTPase activities. Mutation at the P-loop abolishs its function.
Probab=44.54 E-value=34 Score=22.77 Aligned_cols=34 Identities=21% Similarity=0.167 Sum_probs=24.4
Q ss_pred EEEcCCCCCCCCcchHHHHHHHHHcCccEEEEcc
Q 022960 49 IVCHGFQSTKDRIPMVNLAAALEREGISAFRFDF 82 (289)
Q Consensus 49 v~~hG~~~~~~~~~~~~~~~~l~~~G~~v~~~d~ 82 (289)
+.+-|-++...+..-..++..|+++|.+|+.+|.
T Consensus 2 i~~~GkgG~GKTt~a~~la~~l~~~g~~V~~id~ 35 (116)
T cd02034 2 IAITGKGGVGKTTIAALLARYLAEKGKPVLAIDA 35 (116)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEC
Confidence 3455666666544566778888888999999885
No 371
>KOG0635 consensus Adenosine 5'-phosphosulfate kinase [Inorganic ion transport and metabolism]
Probab=43.79 E-value=60 Score=22.96 Aligned_cols=39 Identities=23% Similarity=0.240 Sum_probs=31.4
Q ss_pred CCcEEEEEcCCCCCCCCcchHHHHHHHHHcCccEEEEcc
Q 022960 44 SKQLVIVCHGFQSTKDRIPMVNLAAALEREGISAFRFDF 82 (289)
Q Consensus 44 ~~~~iv~~hG~~~~~~~~~~~~~~~~l~~~G~~v~~~d~ 82 (289)
.+..+|++.|+.++..+...-.+.+.|.++|-..+..|-
T Consensus 29 qkGcviWiTGLSgSGKStlACaL~q~L~qrgkl~Y~LDG 67 (207)
T KOG0635|consen 29 QKGCVIWITGLSGSGKSTLACALSQALLQRGKLTYILDG 67 (207)
T ss_pred CCCcEEEEeccCCCCchhHHHHHHHHHHhcCceEEEecC
Confidence 466899999999988765566788889999888888763
No 372
>PF01734 Patatin: Patatin-like phospholipase This Prosite family is a subset of the Pfam family; InterPro: IPR002641 This domain is structurally and functionally related to the animal cytosolic phospholipase A2. This domain is found in the patatin glycoproteins from the total soluble protein in potato tubers []. Patatin is a storage protein but it also has the enzymatic activity of lipid acyl hydrolase, catalysing the cleavage of fatty acids from membrane lipids [].; GO: 0006629 lipid metabolic process; PDB: 3TU3_B 4AKX_B 1OXW_A.
Probab=43.63 E-value=26 Score=25.26 Aligned_cols=21 Identities=33% Similarity=0.400 Sum_probs=16.6
Q ss_pred eEEEEEeChhHHHHHHHHHhC
Q 022960 118 ITAIIGHSKGGNAVLLYASKY 138 (289)
Q Consensus 118 ~~~l~G~S~Gg~~a~~~a~~~ 138 (289)
--.+.|-|.||.+|+.++...
T Consensus 28 ~d~i~GtS~Gal~a~~~~~~~ 48 (204)
T PF01734_consen 28 FDVISGTSAGALNAALLALGY 48 (204)
T ss_dssp -SEEEEECCHHHHHHHHHTC-
T ss_pred ccEEEEcChhhhhHHHHHhCC
Confidence 348999999999998877763
No 373
>cd07213 Pat17_PNPLA8_PNPLA9_like1 Patatin-like phospholipase. Patatin is a storage protein of the potato tuber that shows Phospholipase A2 activity (PLA2; EC 3.1.1.4). Patatin catalyzes the nonspecific hydrolysis of phospholipids, glycolipids, sulfolipids, and mono- and diacylglycerols, thereby showing lipid acyl hydrolase activity. The active site includes an oxyanion hole with a conserved GGxR motif; it is found in almost all the members of this family. The catalytic dyad is formed by a serine and an aspartate. Patatin belongs to the alpha-beta hydrolase family which is identified by a characteristic nucleophile elbow with a consensus sequence of Sm-X-Nu-Sm (Sm = small residue, X = any residue and Nu = nucleophile). Members of this family have been found also in vertebrates. This family includes subfamily of PNPLA8 (iPLA2-gamma) and PNPLA9 (iPLA2-beta) like phospholipases from human as well as the Pat17 isozyme from Solanum cardiophyllum.
Probab=43.32 E-value=49 Score=26.27 Aligned_cols=19 Identities=32% Similarity=0.300 Sum_probs=16.9
Q ss_pred EEEEeChhHHHHHHHHHhC
Q 022960 120 AIIGHSKGGNAVLLYASKY 138 (289)
Q Consensus 120 ~l~G~S~Gg~~a~~~a~~~ 138 (289)
.++|.|.||.+|+.++...
T Consensus 37 ~i~GTSaGaiia~~la~g~ 55 (288)
T cd07213 37 LFAGTSAGSLIALGLALGY 55 (288)
T ss_pred EEEEeCHHHHHHHHHHcCc
Confidence 8999999999999988654
No 374
>PF02230 Abhydrolase_2: Phospholipase/Carboxylesterase; InterPro: IPR003140 This entry represents the alpha/beta hydrolase domain found in phospholipases [], carboxylesterases [] and thioesterases.; GO: 0016787 hydrolase activity; PDB: 3U0V_A 1AUR_A 1AUO_B 1FJ2_B 3CN9_A 3CN7_A.
Probab=43.25 E-value=1.1e+02 Score=22.86 Aligned_cols=44 Identities=18% Similarity=0.226 Sum_probs=28.5
Q ss_pred CcEEEEEcCCCCCCCC-cchHHHHHHHHHcCccEEEEccccCCCC
Q 022960 45 KQLVIVCHGFQSTKDR-IPMVNLAAALEREGISAFRFDFSGNGES 88 (289)
Q Consensus 45 ~~~iv~~hG~~~~~~~-~~~~~~~~~l~~~G~~v~~~d~~G~G~s 88 (289)
+.+|+++||-....-. ...+...+.|.+.|.+|-...++|-|.+
T Consensus 155 ~~pi~~~hG~~D~vvp~~~~~~~~~~L~~~~~~v~~~~~~g~gH~ 199 (216)
T PF02230_consen 155 KTPILIIHGDEDPVVPFEWAEKTAEFLKAAGANVEFHEYPGGGHE 199 (216)
T ss_dssp TS-EEEEEETT-SSSTHHHHHHHHHHHHCTT-GEEEEEETT-SSS
T ss_pred CCcEEEEecCCCCcccHHHHHHHHHHHHhcCCCEEEEEcCCCCCC
Confidence 4589999998876532 1245677788888888888888865544
No 375
>TIGR00455 apsK adenylylsulfate kinase (apsK). Important residue (active site in E.coli) is residue 100 of the seed alignment.
Probab=43.13 E-value=1.3e+02 Score=21.82 Aligned_cols=38 Identities=21% Similarity=0.328 Sum_probs=27.4
Q ss_pred CCcEEEEEcCCCCCCCCcchHHHHHHHHHcCccEEEEc
Q 022960 44 SKQLVIVCHGFQSTKDRIPMVNLAAALEREGISAFRFD 81 (289)
Q Consensus 44 ~~~~iv~~hG~~~~~~~~~~~~~~~~l~~~G~~v~~~d 81 (289)
..+.++++.|..+++.+.....+...+...|+.++.+|
T Consensus 16 ~~~~~i~i~G~~GsGKstla~~l~~~l~~~~~~~~~l~ 53 (184)
T TIGR00455 16 HRGVVIWLTGLSGSGKSTIANALEKKLESKGYRVYVLD 53 (184)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEC
Confidence 56789999998888765445666667766677777665
No 376
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=42.97 E-value=48 Score=23.75 Aligned_cols=42 Identities=10% Similarity=0.088 Sum_probs=25.1
Q ss_pred CCcEEEEEcCCCCCCCCcchHHHHHHHHHcCccEEEEccccC
Q 022960 44 SKQLVIVCHGFQSTKDRIPMVNLAAALEREGISAFRFDFSGN 85 (289)
Q Consensus 44 ~~~~iv~~hG~~~~~~~~~~~~~~~~l~~~G~~v~~~d~~G~ 85 (289)
..+.+++++|-.|.+.+.....+...+.+.+..++..+....
T Consensus 22 ~~~~~~ll~G~~G~GKT~ll~~~~~~~~~~~~~~~~~~~~~~ 63 (185)
T PF13191_consen 22 GSPRNLLLTGESGSGKTSLLRALLDRLAERGGYVISINCDDS 63 (185)
T ss_dssp -----EEE-B-TTSSHHHHHHHHHHHHHHHT--EEEEEEETT
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEEEecc
Confidence 456899999999998776667778888776444777776644
No 377
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=42.79 E-value=98 Score=20.47 Aligned_cols=54 Identities=24% Similarity=0.204 Sum_probs=31.8
Q ss_pred EEEcCCCCCCCCcchHHHHHHHHHc-CccEEEEccccCCCCCCCccccchHHHHHHHHHHHHHHHh
Q 022960 49 IVCHGFQSTKDRIPMVNLAAALERE-GISAFRFDFSGNGESEGSFLYGNYRREAEDLRAIVQDFCA 113 (289)
Q Consensus 49 v~~hG~~~~~~~~~~~~~~~~l~~~-G~~v~~~d~~G~G~s~~~~~~~~~~~~~~d~~~~i~~l~~ 113 (289)
|++||-.|++.+ .+++.+++. |+.++.+|..-.... ...+....+..+++....
T Consensus 1 ill~G~~G~GKT----~l~~~la~~l~~~~~~i~~~~~~~~-------~~~~~~~~i~~~~~~~~~ 55 (132)
T PF00004_consen 1 ILLHGPPGTGKT----TLARALAQYLGFPFIEIDGSELISS-------YAGDSEQKIRDFFKKAKK 55 (132)
T ss_dssp EEEESSTTSSHH----HHHHHHHHHTTSEEEEEETTHHHTS-------STTHHHHHHHHHHHHHHH
T ss_pred CEEECcCCCCee----HHHHHHHhhcccccccccccccccc-------cccccccccccccccccc
Confidence 689999998854 355555544 678888887643311 112334455555655533
No 378
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=42.45 E-value=20 Score=27.29 Aligned_cols=29 Identities=14% Similarity=0.170 Sum_probs=21.2
Q ss_pred EEEEcCCCCCCCCcchHHHHHHHHHcCccEEEEccc
Q 022960 48 VIVCHGFQSTKDRIPMVNLAAALEREGISAFRFDFS 83 (289)
Q Consensus 48 iv~~hG~~~~~~~~~~~~~~~~l~~~G~~v~~~d~~ 83 (289)
=|+++|-|-+.+ +..|+++||.|+.+|+-
T Consensus 46 rvLvPgCGkg~D-------~~~LA~~G~~V~GvDlS 74 (226)
T PRK13256 46 VCLIPMCGCSID-------MLFFLSKGVKVIGIELS 74 (226)
T ss_pred eEEEeCCCChHH-------HHHHHhCCCcEEEEecC
Confidence 456666665542 25788899999999985
No 379
>cd02033 BchX Chlorophyllide reductase converts chlorophylls into bacteriochlorophylls by reducing the chlorin B-ring. This family contains the X subunit of this three-subunit enzyme. Sequence and structure similarity between bchX, protochlorophyllide reductase L subunit (bchL and chlL) and nitrogenase Fe protein (nifH gene) suggest their functional similarity. Members of the BchX family serve as the unique electron donors to their respective catalytic subunits (bchN-bchB, bchY-bchZ and nitrogenase component 1). Mechanistically, they hydrolyze ATP and transfer electrons through a Fe4-S4 cluster.
Probab=42.44 E-value=44 Score=27.17 Aligned_cols=40 Identities=15% Similarity=0.234 Sum_probs=28.9
Q ss_pred CCcEEEEEcCCCCCCCCcchHHHHHHHHHcCccEEEEccc
Q 022960 44 SKQLVIVCHGFQSTKDRIPMVNLAAALEREGISAFRFDFS 83 (289)
Q Consensus 44 ~~~~iv~~hG~~~~~~~~~~~~~~~~l~~~G~~v~~~d~~ 83 (289)
++..+|.+.|-|+...+..-..++..|++.|++|+.+|.-
T Consensus 29 ~~~~ii~v~gkgG~GKSt~a~nLa~~la~~g~rVllid~D 68 (329)
T cd02033 29 KKTQIIAIYGKGGIGKSFTLANLSYMMAQQGKRVLLIGCD 68 (329)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEee
Confidence 3444555558777776545677888999999999888763
No 380
>KOG1200 consensus Mitochondrial/plastidial beta-ketoacyl-ACP reductase [Lipid transport and metabolism]
Probab=42.19 E-value=1.5e+02 Score=22.28 Aligned_cols=32 Identities=22% Similarity=0.160 Sum_probs=23.2
Q ss_pred EEEEcCCCCCCCCcchHHHHHHHHHcCccEEEEccc
Q 022960 48 VIVCHGFQSTKDRIPMVNLAAALEREGISAFRFDFS 83 (289)
Q Consensus 48 iv~~hG~~~~~~~~~~~~~~~~l~~~G~~v~~~d~~ 83 (289)
+..+-|.+... -+.++..|++.|++|++.|+.
T Consensus 16 ~~~vtGg~sGI----GrAia~~la~~Garv~v~dl~ 47 (256)
T KOG1200|consen 16 VAAVTGGSSGI----GRAIAQLLAKKGARVAVADLD 47 (256)
T ss_pred eeEEecCCchH----HHHHHHHHHhcCcEEEEeecc
Confidence 44444544332 577899999999999999876
No 381
>cd07219 Pat_PNPLA1 Patatin-like phospholipase domain containing protein 1. Members of this family share a patatin domain, initially discovered in potato tubers. Some members of PNPLA1 subfamily do not have the lipase consensus sequence Gly-X-Ser-X-Gly which is essential for hydrolase activity. This family includes PNPLA1 from Homo sapiens and Gallus gallus. Currently, there is no literature available on the physiological role, structure, or enzymatic activity of PNPLA1. It is expressed in various human tissues in low mRNA levels.
Probab=41.89 E-value=42 Score=27.80 Aligned_cols=18 Identities=22% Similarity=0.274 Sum_probs=16.2
Q ss_pred EEEEeChhHHHHHHHHHh
Q 022960 120 AIIGHSKGGNAVLLYASK 137 (289)
Q Consensus 120 ~l~G~S~Gg~~a~~~a~~ 137 (289)
.++|-|.|+.++..++..
T Consensus 47 ~IaGtSAGALvAAl~asG 64 (382)
T cd07219 47 RVAGTSAGSVIAALVVCG 64 (382)
T ss_pred eEEEEcHHHHHHHHHHhC
Confidence 699999999999988875
No 382
>PRK13973 thymidylate kinase; Provisional
Probab=41.57 E-value=48 Score=24.83 Aligned_cols=39 Identities=18% Similarity=0.149 Sum_probs=31.4
Q ss_pred cEEEEEcCCCCCCCCcchHHHHHHHHHcCccEEEEcccc
Q 022960 46 QLVIVCHGFQSTKDRIPMVNLAAALEREGISAFRFDFSG 84 (289)
Q Consensus 46 ~~iv~~hG~~~~~~~~~~~~~~~~l~~~G~~v~~~d~~G 84 (289)
..+|.+=|..|++.+-....+.+.|.+.|+.|+....||
T Consensus 3 g~~IviEG~dGsGKtTq~~~l~~~l~~~g~~~~~~~~p~ 41 (213)
T PRK13973 3 GRFITFEGGEGAGKSTQIRLLAERLRAAGYDVLVTREPG 41 (213)
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEECCC
Confidence 356677888888765567788899999999999998887
No 383
>COG3727 Vsr DNA G:T-mismatch repair endonuclease [DNA replication, recombination, and repair]
Probab=41.51 E-value=65 Score=22.02 Aligned_cols=37 Identities=16% Similarity=0.083 Sum_probs=22.8
Q ss_pred CCcEEEEEcCCCCCCCC-----------cchH-----------HHHHHHHHcCccEEEE
Q 022960 44 SKQLVIVCHGFQSTKDR-----------IPMV-----------NLAAALEREGISAFRF 80 (289)
Q Consensus 44 ~~~~iv~~hG~~~~~~~-----------~~~~-----------~~~~~l~~~G~~v~~~ 80 (289)
...++||+||-.-+... .+|. .....|.+.|++|+++
T Consensus 56 ~y~~viFvHGCFWh~H~c~~a~vPksnt~fWleKi~kNveRD~r~~~~L~~~GwrvlvV 114 (150)
T COG3727 56 KYRCVIFVHGCFWHGHHCYLAKVPKSNTEFWLEKIGKNVERDERDIKRLQQLGWRVLVV 114 (150)
T ss_pred CceEEEEEeeeeccCCccccccCCCcchHHHHHHHhhhhhhhHHHHHHHHHcCCeEEEE
Confidence 34689999995433221 1232 2445688889998765
No 384
>COG0505 CarA Carbamoylphosphate synthase small subunit [Amino acid transport and metabolism / Nucleotide transport and metabolism]
Probab=41.48 E-value=73 Score=26.06 Aligned_cols=64 Identities=14% Similarity=0.037 Sum_probs=38.0
Q ss_pred HHHHHHHHHcCccEEEEcccc------------CCCCCCCccccchHHHHHHHHHHHHHHHhcCCceEEEEEeChhHHHH
Q 022960 64 VNLAAALEREGISAFRFDFSG------------NGESEGSFLYGNYRREAEDLRAIVQDFCAKGRVITAIIGHSKGGNAV 131 (289)
Q Consensus 64 ~~~~~~l~~~G~~v~~~d~~G------------~G~s~~~~~~~~~~~~~~d~~~~i~~l~~~~~~~~~l~G~S~Gg~~a 131 (289)
..+.+.|.++|+.|.++-+-- ---|.++-+. ..++.....++.+... .+=++|.|+|=.+.
T Consensus 191 ~nIlr~L~~rg~~vtVVP~~t~~eeIl~~~pDGiflSNGPGDP----~~~~~~i~~ik~l~~~---~iPifGICLGHQll 263 (368)
T COG0505 191 RNILRELVKRGCRVTVVPADTSAEEILALNPDGIFLSNGPGDP----APLDYAIETIKELLGT---KIPIFGICLGHQLL 263 (368)
T ss_pred HHHHHHHHHCCCeEEEEcCCCCHHHHHhhCCCEEEEeCCCCCh----hHHHHHHHHHHHHhcc---CCCeEEEcHHHHHH
Confidence 468889999999988875431 1122222222 2344444555544332 23689999998876
Q ss_pred HHH
Q 022960 132 LLY 134 (289)
Q Consensus 132 ~~~ 134 (289)
..+
T Consensus 264 alA 266 (368)
T COG0505 264 ALA 266 (368)
T ss_pred HHh
Confidence 653
No 385
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=41.43 E-value=47 Score=24.06 Aligned_cols=43 Identities=14% Similarity=0.106 Sum_probs=32.5
Q ss_pred CcEEEEEcCCCCCCCCcchHHHHHHHHHcCccEEEEccccCCC
Q 022960 45 KQLVIVCHGFQSTKDRIPMVNLAAALEREGISAFRFDFSGNGE 87 (289)
Q Consensus 45 ~~~iv~~hG~~~~~~~~~~~~~~~~l~~~G~~v~~~d~~G~G~ 87 (289)
.++|+.+=|..+++.+.+...+...|..+|++|-.+-..+||.
T Consensus 5 ~~~ii~ivG~sgsGKTTLi~~li~~l~~~g~~vg~Ik~~~~~~ 47 (173)
T PRK10751 5 MIPLLAIAAWSGTGKTTLLKKLIPALCARGIRPGLIKHTHHDM 47 (173)
T ss_pred CceEEEEECCCCChHHHHHHHHHHHHhhcCCeEEEEEEcCCCc
Confidence 4557777788777765566888888988899888887777664
No 386
>TIGR03708 poly_P_AMP_trns polyphosphate:AMP phosphotransferase. Members of this protein family contain a domain duplication. The characterized member from Acinetobacter johnsonii is polyphosphate:AMP phosphotransferase (PAP), which can transfer the terminal phosphate from poly(P) to AMP, yielding ADP. In the opposite direction, this enzyme can synthesize poly(P). Each domain of this protein family is homologous to polyphosphate kinase, an enzyme that can run in the forward direction to extend a polyphosphate chain with a new terminal phosphate from ATP, or in reverse to make ATP (or GTP) from ADP (or GDP).
Probab=41.42 E-value=29 Score=29.93 Aligned_cols=42 Identities=14% Similarity=0.264 Sum_probs=35.2
Q ss_pred CCCcEEEEEcCCCCCCCCcchHHHHHHHHHcCccEEEEcccc
Q 022960 43 GSKQLVIVCHGFQSTKDRIPMVNLAAALEREGISAFRFDFSG 84 (289)
Q Consensus 43 ~~~~~iv~~hG~~~~~~~~~~~~~~~~l~~~G~~v~~~d~~G 84 (289)
...|+||++-|+.+.+.......+...|..+|++|..+..|.
T Consensus 37 ~~~~vlIv~eG~DaaGKg~~I~~l~~~ldprg~~v~~~~~P~ 78 (493)
T TIGR03708 37 AGFPVIILIEGWDGAGKGETINLLNEWMDPRGIETHAFGRPS 78 (493)
T ss_pred cCCeEEEEEeCCCCCChHHHHHHHHHHhCcCccEEEeCCCCC
Confidence 467899999999988766567888889999999999987764
No 387
>COG1576 Uncharacterized conserved protein [Function unknown]
Probab=41.15 E-value=1e+02 Score=21.87 Aligned_cols=49 Identities=22% Similarity=0.365 Sum_probs=31.1
Q ss_pred CccEEEEccccCCCCCCCccccchHHHHHHHHHHHHHHHhcCCceEEEEEeChhHHHHHHH
Q 022960 74 GISAFRFDFSGNGESEGSFLYGNYRREAEDLRAIVQDFCAKGRVITAIIGHSKGGNAVLLY 134 (289)
Q Consensus 74 G~~v~~~d~~G~G~s~~~~~~~~~~~~~~d~~~~i~~l~~~~~~~~~l~G~S~Gg~~a~~~ 134 (289)
|-.|++.|.+|--.|+ +.+...++.++..+.+=.++||-|.|=.-++.-
T Consensus 67 ~~~vi~Ld~~Gk~~sS------------e~fA~~l~~~~~~G~~i~f~IGG~~Gl~~~~~~ 115 (155)
T COG1576 67 GSYVVLLDIRGKALSS------------EEFADFLERLRDDGRDISFLIGGADGLSEAVKA 115 (155)
T ss_pred CCeEEEEecCCCcCCh------------HHHHHHHHHHHhcCCeEEEEEeCcccCCHHHHH
Confidence 5689999999743332 344555555555563335899999996555543
No 388
>cd03416 CbiX_SirB_N Sirohydrochlorin cobalt chelatase (CbiX) and sirohydrochlorin iron chelatase (SirB), N-terminal domain. SirB catalyzes the ferro-chelation of sirohydrochlorin to siroheme, the prosthetic group of sulfite and nitrite reductases. CbiX is a cobaltochelatase, responsible for the chelation of Co2+ into sirohydrochlorin, an important step in the vitamin B12 biosynthetic pathway. CbiX often contains a C-terminal histidine-rich region that may be important for metal delivery and/or storage, and may also contain an iron-sulfur center. Both are found in a wide range of bacteria. This subgroup also contains single domain proteins from archaea and bacteria which may represent the ancestral form of class II chelatases before domain duplication occurred.
Probab=40.99 E-value=50 Score=21.08 Aligned_cols=27 Identities=26% Similarity=0.407 Sum_probs=16.7
Q ss_pred EEEEEcCCCCCCCCcchHHHHHHHHHc
Q 022960 47 LVIVCHGFQSTKDRIPMVNLAAALERE 73 (289)
Q Consensus 47 ~iv~~hG~~~~~~~~~~~~~~~~l~~~ 73 (289)
.|++-||.........+..+++.+.+.
T Consensus 2 ivlv~hGS~~~~~~~~~~~l~~~l~~~ 28 (101)
T cd03416 2 LLLVGHGSRDPRAAEALEALAERLRER 28 (101)
T ss_pred EEEEEcCCCCHHHHHHHHHHHHHHHhh
Confidence 467778877642212466777777665
No 389
>PF04084 ORC2: Origin recognition complex subunit 2 ; InterPro: IPR007220 The Origin Recognition Complex (ORC) is a six-subunit ATP-dependent DNA-binding complex encoded in yeast by ORC1-6 []. ORC is a central component for eukaryotic DNA replication, and binds chromatin at replication origins throughout the cell cycle []. ORC directs DNA replication throughout the genome and is required for its initiation [, , ]. ORC bound at replication origins serves as the foundation for assembly of the pre-replicative complex (pre-RC), which includes Cdc6, Tah11 (aka Cdt1), and the Mcm2-7 complex [, , ]. Pre-RC assembly during G1 is required for replication licensing of chromosomes prior to DNA synthesis during S phase [, , ]. Cell cycle-regulated phosphorylation of Orc2, Orc6, Cdc6, and MCM by the cyclin-dependent protein kinase Cdc28 regulates initiation of DNA replication, including blocking reinitiation in G2/M phase [, , , ]. In yeast, ORC also plays a role in the establishment of silencing at the mating-type loci Hidden MAT Left (HML) and Hidden MAT Right (HMR) [, , ]. ORC participates in the assembly of transcriptionally silent chromatin at HML and HMR by recruiting the Sir1 silencing protein to the HML and HMR silencers [, , ]. Both Orc1 and Orc5 bind ATP, though only Orc1 has ATPase activity []. The binding of ATP by Orc1 is required for ORC binding to DNA and is essential for cell viability []. The ATPase activity of Orc1 is involved in formation of the pre-RC [, , ]. ATP binding by Orc5 is crucial for the stability of ORC as a whole. Only the Orc1-5 subunits are required for origin binding; Orc6 is essential for maintenance of pre-RCs once formed []. Interactions within ORC suggest that Orc2-3-6 may form a core complex []. ORC homologues have been found in various eukaryotes, including fission yeast, insects, amphibians, and humans []. This entry represents subunit 2, which binds the origin of replication. It plays a role in chromosome replication and mating type transcriptional silencing.; GO: 0006260 DNA replication, 0000808 origin recognition complex, 0005634 nucleus
Probab=40.87 E-value=1.6e+02 Score=23.97 Aligned_cols=47 Identities=17% Similarity=0.241 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHhcC-CceEEEEEeChhHHH--------HHHHHHhCCCccEEEEec
Q 022960 102 EDLRAIVQDFCAKG-RVITAIIGHSKGGNA--------VLLYASKYNDISIVINIS 148 (289)
Q Consensus 102 ~d~~~~i~~l~~~~-~~~~~l~G~S~Gg~~--------a~~~a~~~p~v~~~v~~~ 148 (289)
+.+..+++.+.... ..+++|+=|+.=|.. ++...+..|.|.-+..++
T Consensus 121 ~~~~~i~~~l~~~~~~~~l~lvIHnIDg~~LR~~~~Q~~La~LA~~p~I~lIASiD 176 (326)
T PF04084_consen 121 EQLDFIISYLESRPSPPPLYLVIHNIDGPSLRNEKAQSLLAQLASIPNIHLIASID 176 (326)
T ss_pred HHHHHHHHHHhccCCCCceEEEEECCCChhhcChHHHHHHHHHHcCCCeEEEEecc
Confidence 33444455554443 668999999987755 344445566655444443
No 390
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=40.76 E-value=2e+02 Score=23.51 Aligned_cols=72 Identities=18% Similarity=0.247 Sum_probs=47.2
Q ss_pred HHHHHcCccEEEEccccCCCCCCCccccchHHHHHHHHHHHHHHHhc---CCceEEEEEeChhHHHHHHHHHhCCC---c
Q 022960 68 AALEREGISAFRFDFSGNGESEGSFLYGNYRREAEDLRAIVQDFCAK---GRVITAIIGHSKGGNAVLLYASKYND---I 141 (289)
Q Consensus 68 ~~l~~~G~~v~~~d~~G~G~s~~~~~~~~~~~~~~d~~~~i~~l~~~---~~~~~~l~G~S~Gg~~a~~~a~~~p~---v 141 (289)
+.-..+||.|+.+|--|.=.+. ....+.+..+.+-+... .+..+.++--+.-|.-++.-|..+.+ +
T Consensus 215 ~~Akar~~DvvliDTAGRLhnk--------~nLM~EL~KI~rV~~k~~~~ap~e~llvlDAttGqnal~QAk~F~eav~l 286 (340)
T COG0552 215 QAAKARGIDVVLIDTAGRLHNK--------KNLMDELKKIVRVIKKDDPDAPHEILLVLDATTGQNALSQAKIFNEAVGL 286 (340)
T ss_pred HHHHHcCCCEEEEeCcccccCc--------hhHHHHHHHHHHHhccccCCCCceEEEEEEcccChhHHHHHHHHHHhcCC
Confidence 3444557888888877633222 34455666666555433 23347777799999999988888766 7
Q ss_pred cEEEEe
Q 022960 142 SIVINI 147 (289)
Q Consensus 142 ~~~v~~ 147 (289)
.++|+-
T Consensus 287 ~GiIlT 292 (340)
T COG0552 287 DGIILT 292 (340)
T ss_pred ceEEEE
Confidence 788763
No 391
>PRK14340 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=40.68 E-value=2.3e+02 Score=24.37 Aligned_cols=93 Identities=12% Similarity=0.034 Sum_probs=49.6
Q ss_pred EEEcCCCCCCCCcchHHHHHHHHHcCccEEEEccccCCCCCCC-ccccchHHH-HHHHHHHHH---HHHhcCCceEEEEE
Q 022960 49 IVCHGFQSTKDRIPMVNLAAALEREGISAFRFDFSGNGESEGS-FLYGNYRRE-AEDLRAIVQ---DFCAKGRVITAIIG 123 (289)
Q Consensus 49 v~~hG~~~~~~~~~~~~~~~~l~~~G~~v~~~d~~G~G~s~~~-~~~~~~~~~-~~d~~~~i~---~l~~~~~~~~~l~G 123 (289)
++++-+|+..+...-..+...|.+.||.+..- + ...+-- -...++... .+.+...+. .+++.+....++++
T Consensus 9 ~~i~tlGC~~N~~dse~~~~~l~~~G~~~~~~--~--~~ADviiiNTC~v~~~A~~k~~~~i~~~~~~k~~~~~~~ivv~ 84 (445)
T PRK14340 9 FYIHTFGCQMNQADSEIITALLQDEGYVPAAS--E--EDADIVLLNTCAVRENAVERIGHYLQHLKGAKRRRKGLLVGVL 84 (445)
T ss_pred EEEEecCCCCcHHHHHHHHHHHHHCcCEECCC--c--ccCCEEEEEeeeeeccHHHHHHHHHHHHHHHhhcCCCCEEEEe
Confidence 77788888776544566888888889866531 0 001100 001122111 123333433 33333445556776
Q ss_pred eChhHHHHHHHHHhCCCccEEE
Q 022960 124 HSKGGNAVLLYASKYNDISIVI 145 (289)
Q Consensus 124 ~S~Gg~~a~~~a~~~p~v~~~v 145 (289)
-++--...-.++...|.|+.++
T Consensus 85 GC~a~~~~~e~~~~~p~vd~v~ 106 (445)
T PRK14340 85 GCVPQYEREEMFSMFPVIDFLA 106 (445)
T ss_pred CcccccchHHHHhhCCCCcEEE
Confidence 6666655556666677777666
No 392
>PF06500 DUF1100: Alpha/beta hydrolase of unknown function (DUF1100); InterPro: IPR010520 Proteins in this entry display esterase activity toward pNP-butyrate []. This entry also includes 2,6-dihydropseudooxynicotine hydrolase which has a role in nicotine catabolism by cleaving a C-C bond in 2,6-dihydroxypseudooxyicotine [, ].; PDB: 3OUR_A 3MVE_B 2JBW_C.
Probab=40.60 E-value=64 Score=27.13 Aligned_cols=59 Identities=10% Similarity=0.166 Sum_probs=34.3
Q ss_pred CceEEEEEeCCCCccChhhHHHHHhhC--CCc--EEEEEcCCCccc---c-cCchHHHHHHHHHHHhh
Q 022960 211 DCRVLTIHGTKDKMVPAEDALEFDKFI--PNH--KLHIIEGADHEF---T-SHQDELASLVIQFIKAN 270 (289)
Q Consensus 211 ~~P~l~i~g~~D~~~~~~~~~~~~~~~--~~~--~~~~~~~~gH~~---~-~~~~~~~~~i~~fl~~~ 270 (289)
..|++++.|.-|.+- .+....+.+.+ .+. -.+.+||.|+.. + .+.+...+.+.+||...
T Consensus 189 p~P~VIv~gGlDs~q-eD~~~l~~~~l~~rGiA~LtvDmPG~G~s~~~~l~~D~~~l~~aVLd~L~~~ 255 (411)
T PF06500_consen 189 PYPTVIVCGGLDSLQ-EDLYRLFRDYLAPRGIAMLTVDMPGQGESPKWPLTQDSSRLHQAVLDYLASR 255 (411)
T ss_dssp -EEEEEEE--TTS-G-GGGHHHHHCCCHHCT-EEEEE--TTSGGGTTT-S-S-CCHHHHHHHHHHHHS
T ss_pred CCCEEEEeCCcchhH-HHHHHHHHHHHHhCCCEEEEEccCCCcccccCCCCcCHHHHHHHHHHHHhcC
Confidence 679999999999865 34444444444 233 344568888763 2 33467889999999764
No 393
>cd03785 GT1_MurG MurG is an N-acetylglucosaminyltransferase, the last enzyme involved in the intracellular phase of peptidoglycan biosynthesis. It transfers N-acetyl-D-glucosamine (GlcNAc) from UDP-GlcNAc to the C4 hydroxyl of a lipid-linked N-acetylmuramoyl pentapeptide (NAM). The resulting disaccharide is then transported across the cell membrane, where it is polymerized into NAG-NAM cell-wall repeat structure. MurG belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains, each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=40.57 E-value=2e+02 Score=23.28 Aligned_cols=33 Identities=21% Similarity=0.300 Sum_probs=21.9
Q ss_pred EEEcCCCCCCCCcchHHHHHHHHHcCccEEEEc
Q 022960 49 IVCHGFQSTKDRIPMVNLAAALEREGISAFRFD 81 (289)
Q Consensus 49 v~~hG~~~~~~~~~~~~~~~~l~~~G~~v~~~d 81 (289)
|++++.+...+......+++.|.++|+.|..+-
T Consensus 2 ~~~~~~~~gG~~~~~~~la~~l~~~G~ev~v~~ 34 (350)
T cd03785 2 ILIAGGGTGGHIFPALALAEELRERGAEVLFLG 34 (350)
T ss_pred EEEEecCchhhhhHHHHHHHHHHhCCCEEEEEE
Confidence 455555544433335588999999999987763
No 394
>TIGR00089 RNA modification enzyme, MiaB family. This subfamily is aparrently a part of a larger superfamily of enzymes utilizing both a 4Fe4S cluster and S-adenosyl methionine (SAM) to initiate radical reactions. MiaB acts on a particular isoprenylated Adenine base of certain tRNAs causing thiolation at an aromatic carbon, and probably also transferring a methyl grouyp from SAM to the thiol. The particular substrate of the three other clades is unknown but may be very closely related.
Probab=40.44 E-value=2.3e+02 Score=24.09 Aligned_cols=93 Identities=6% Similarity=0.058 Sum_probs=49.5
Q ss_pred EEEcCCCCCCCCcchHHHHHHHHHcCccEEEEccccCCCCCCCc-cccch-HHHHHHHHHHHHHHHhcCCce-EEEEEeC
Q 022960 49 IVCHGFQSTKDRIPMVNLAAALEREGISAFRFDFSGNGESEGSF-LYGNY-RREAEDLRAIVQDFCAKGRVI-TAIIGHS 125 (289)
Q Consensus 49 v~~hG~~~~~~~~~~~~~~~~l~~~G~~v~~~d~~G~G~s~~~~-~~~~~-~~~~~d~~~~i~~l~~~~~~~-~~l~G~S 125 (289)
+.++-+|+..+...-..+...|.+.||.++..+-. .+--. ...++ ........+.++.++..+... .+++|-+
T Consensus 2 ~~~~t~GC~~N~~ds~~~~~~l~~~g~~~~~~~~~----aD~v~intC~v~~~a~~~~~~~i~~~~~~~~~~~~vvvgGc 77 (429)
T TIGR00089 2 VYIETYGCQMNEADSEIMAGLLKEAGYEVTDDPEE----ADVIIINTCAVREKAEQKVRSRLGELAKLKKKNAKIVVAGC 77 (429)
T ss_pred EEEEEcCCCCcHHHHHHHHHHHHHCcCEECCCccc----CCEEEEecceeechHHHHHHHHHHHHHHhCcCCCEEEEECc
Confidence 45666777665544567888888889866532100 00000 01111 223346666777766554432 4666655
Q ss_pred hhHHHHHHHHHhCCCccEEE
Q 022960 126 KGGNAVLLYASKYNDISIVI 145 (289)
Q Consensus 126 ~Gg~~a~~~a~~~p~v~~~v 145 (289)
+-....-.++...|.++.++
T Consensus 78 ~a~~~~ee~~~~~~~vd~vv 97 (429)
T TIGR00089 78 LAQREGEELLKRIPEVDIVL 97 (429)
T ss_pred ccccCHHHHHhhCCCCCEEE
Confidence 55554445455566677654
No 395
>TIGR03127 RuMP_HxlB 6-phospho 3-hexuloisomerase. Members of this protein family are 6-phospho 3-hexuloisomerase (PHI), or the PHI domain of a fusion protein. This enzyme is part of the ribulose monophosphate (RuMP) pathway, which in one direction removes the toxic metabolite formaldehyde by assimilation into fructose-6-phosphate. In the other direction, in species lacking a complete pentose phosphate pathway, the RuMP pathway yields ribulose-5-phosphate, necessary for nucleotide biosynthesis, at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin.
Probab=40.32 E-value=94 Score=22.40 Aligned_cols=32 Identities=16% Similarity=0.159 Sum_probs=21.8
Q ss_pred EEEEcCCCCCCCCcchHHHHHHHHHcCccEEEEc
Q 022960 48 VIVCHGFQSTKDRIPMVNLAAALEREGISAFRFD 81 (289)
Q Consensus 48 iv~~hG~~~~~~~~~~~~~~~~l~~~G~~v~~~d 81 (289)
-|++.|.|.+. ..-..+...|...|..+..++
T Consensus 32 ~I~i~G~G~S~--~~A~~~~~~l~~~g~~~~~~~ 63 (179)
T TIGR03127 32 RIFVAGAGRSG--LVGKAFAMRLMHLGFNVYVVG 63 (179)
T ss_pred EEEEEecCHHH--HHHHHHHHHHHhCCCeEEEeC
Confidence 46777877665 235566777777788887764
No 396
>PF09664 DUF2399: Protein of unknown function C-terminus (DUF2399); InterPro: IPR024465 This domain is found in archaeal, bacterial and eukaryotic proteins. Its function is unknown.
Probab=40.27 E-value=23 Score=24.98 Aligned_cols=31 Identities=19% Similarity=0.214 Sum_probs=24.9
Q ss_pred CCcEEEEEcCCCCCCCCcchHHHHHHHHHcCccEE
Q 022960 44 SKQLVIVCHGFQSTKDRIPMVNLAAALEREGISAF 78 (289)
Q Consensus 44 ~~~~iv~~hG~~~~~~~~~~~~~~~~l~~~G~~v~ 78 (289)
..+++|+.+|.+... ...+.+.|++.|..++
T Consensus 40 ~~~pLVCt~G~p~~A----~~~LL~~L~~~g~~l~ 70 (152)
T PF09664_consen 40 SCPPLVCTSGQPSAA----ARRLLDRLAAAGARLY 70 (152)
T ss_pred CCCeEEEcCCcHHHH----HHHHHHHHHhCCCEEE
Confidence 578999999998766 5678889988887654
No 397
>COG3887 Predicted signaling protein consisting of a modified GGDEF domain and a DHH domain [Signal transduction mechanisms]
Probab=40.15 E-value=1.1e+02 Score=27.06 Aligned_cols=50 Identities=14% Similarity=0.139 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHHhcCCceEEEEEe------ChhHHHHHHHHHhCCCccEEEEecc
Q 022960 99 REAEDLRAIVQDFCAKGRVITAIIGH------SKGGNAVLLYASKYNDISIVINISG 149 (289)
Q Consensus 99 ~~~~d~~~~i~~l~~~~~~~~~l~G~------S~Gg~~a~~~a~~~p~v~~~v~~~~ 149 (289)
.-+..+..++..+... .++|+++|| |.|+.+++..-+..-.-.+.+.+.|
T Consensus 321 vRaRvis~al~d~i~e-~d~VfImGHk~pDmDalGsAig~~~~A~~~~~~a~~v~dp 376 (655)
T COG3887 321 VRARVISTALSDIIKE-SDNVFIMGHKFPDMDALGSAIGMQKFASMNNKEAFAVLDP 376 (655)
T ss_pred HHHHHHHHHHHHHHhh-cCcEEEEccCCCChHHHHHHHHHHHHHHhcccccEEEECc
Confidence 3456666666665443 668999999 7899999877665433345555554
No 398
>PF03610 EIIA-man: PTS system fructose IIA component; InterPro: IPR004701 The phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS) [, ] is a major carbohydrate transport system in bacteria. The PTS catalyses the phosphorylation of incoming sugar substrates and coupled with translocation across the cell membrane, makes the PTS a link between the uptake and metabolism of sugars. The general mechanism of the PTS is the following: a phosphoryl group from phosphoenolpyruvate (PEP) is transferred via a signal transduction pathway, to enzyme I (EI) which in turn transfers it to a phosphoryl carrier, the histidine protein (HPr). Phospho-HPr then transfers the phosphoryl group to a sugar-specific permease, a membrane-bound complex known as enzyme 2 (EII), which transports the sugar to the cell. EII consists of at least three structurally distinct domains IIA, IIB and IIC []. These can either be fused together in a single polypeptide chain or exist as two or three interactive chains, formerly called enzymes II (EII) and III (EIII). The first domain (IIA or EIIA) carries the first permease-specific phosphorylation site, a histidine which is phosphorylated by phospho-HPr. The second domain (IIB or EIIB) is phosphorylated by phospho-IIA on a cysteinyl or histidyl residue, depending on the sugar transported. Finally, the phosphoryl group is transferred from the IIB domain to the sugar substrate concomitantly with the sugar uptake processed by the IIC domain. This third domain (IIC or EIIC) forms the translocation channel and the specific substrate-binding site. An additional transmembrane domain IID, homologous to IIC, can be found in some PTSs, e.g. for mannose [, , , ]. The Man family is unique in several respects among PTS permease families. It is the only PTS family in which members possess a IID protein. It is the only PTS family in which the IIB constituent is phosphorylated on a histidyl rather than a cysteyl residue. Its permease members exhibit broad specificity for a range of sugars, rather than being specific for just one or a few sugars. The mannose permease of Escherichia coli, for example, can transport and phosphorylate glucose, mannose, fructose, glucosamine, N-acetylglucosamine, and other sugars. Other members of this can transport sorbose, fructose and N-acetylglucosamine. This family is specific for IIA and IIB components.; GO: 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system, 0016021 integral to membrane; PDB: 3GDW_B 2JZN_A 1VSQ_A 2JZO_B 1VRC_A 1PDO_A 3GX1_A 3B48_B 3BED_B 3IPR_C ....
Probab=39.96 E-value=1.1e+02 Score=20.19 Aligned_cols=77 Identities=16% Similarity=0.111 Sum_probs=47.9
Q ss_pred EEEEEcCCCCCCCCcchHHHHHHHHHc-CccEEEEccccCCCCCCCccccchHHHHHHHHHHHHHHHhcCCceEEEEEeC
Q 022960 47 LVIVCHGFQSTKDRIPMVNLAAALERE-GISAFRFDFSGNGESEGSFLYGNYRREAEDLRAIVQDFCAKGRVITAIIGHS 125 (289)
Q Consensus 47 ~iv~~hG~~~~~~~~~~~~~~~~l~~~-G~~v~~~d~~G~G~s~~~~~~~~~~~~~~d~~~~i~~l~~~~~~~~~l~G~S 125 (289)
.||.-||..... ....++.+... --.+.++++. ...+.++..+.+.+.++.+. ..+.+.++--=
T Consensus 2 iii~sHG~~A~g----~~~~~~~i~G~~~~~i~~~~~~---------~~~~~~~~~~~l~~~i~~~~--~~~~vlil~Dl 66 (116)
T PF03610_consen 2 IIIASHGSLAEG----LLESAEMILGEDQDNIEAVDLY---------PDESIEDFEEKLEEAIEELD--EGDGVLILTDL 66 (116)
T ss_dssp EEEEEETTHHHH----HHHHHHHHHTSTCSSEEEEEET---------TTSCHHHHHHHHHHHHHHCC--TTSEEEEEESS
T ss_pred EEEEECcHHHHH----HHHHHHHHcCCCcccEEEEECc---------CCCCHHHHHHHHHHHHHhcc--CCCcEEEEeeC
Confidence 578889944433 56666666655 2467777765 12344566677777775442 24578888888
Q ss_pred hhHHHHHHHHHhC
Q 022960 126 KGGNAVLLYASKY 138 (289)
Q Consensus 126 ~Gg~~a~~~a~~~ 138 (289)
+||...-..+...
T Consensus 67 ~ggsp~n~a~~~~ 79 (116)
T PF03610_consen 67 GGGSPFNEAARLL 79 (116)
T ss_dssp TTSHHHHHHHHHH
T ss_pred CCCccchHHHHHh
Confidence 8887665554443
No 399
>KOG2214 consensus Predicted esterase of the alpha-beta hydrolase superfamily [General function prediction only]
Probab=39.88 E-value=12 Score=31.74 Aligned_cols=40 Identities=15% Similarity=0.283 Sum_probs=29.5
Q ss_pred HHHHHHHhcCCceEEEEEeChhHHHHHHHHHhCCC-ccEEE
Q 022960 106 AIVQDFCAKGRVITAIIGHSKGGNAVLLYASKYND-ISIVI 145 (289)
Q Consensus 106 ~~i~~l~~~~~~~~~l~G~S~Gg~~a~~~a~~~p~-v~~~v 145 (289)
-+++.|-+++.-+-++.|.|+||.+|..++.+..+ ++.+.
T Consensus 191 GVlrtL~e~dLlP~IIsGsS~GaivAsl~~v~~~eEl~~Ll 231 (543)
T KOG2214|consen 191 GVLRTLLEQDLLPNIISGSSAGAIVASLVGVRSNEELKQLL 231 (543)
T ss_pred HHHHHHHHccccchhhcCCchhHHHHHHHhhcchHHHHHHh
Confidence 34555656677777999999999999998887644 54443
No 400
>PLN03019 carbonic anhydrase
Probab=39.85 E-value=61 Score=26.22 Aligned_cols=30 Identities=23% Similarity=0.215 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHhcCCceEEEEEeChhHHHHHHH
Q 022960 102 EDLRAIVQDFCAKGRVITAIIGHSKGGNAVLLY 134 (289)
Q Consensus 102 ~d~~~~i~~l~~~~~~~~~l~G~S~Gg~~a~~~ 134 (289)
..+.-++..| +.+.|+|+|||-=|.+...+
T Consensus 203 aSIEYAV~~L---~V~~IVV~GHs~CGaVkAal 232 (330)
T PLN03019 203 AAIEYAVLHL---KVENIVVIGHSACGGIKGLM 232 (330)
T ss_pred hhHHHHHHHh---CCCEEEEecCCCchHHHHHH
Confidence 4555556666 88899999999877665543
No 401
>TIGR01969 minD_arch cell division ATPase MinD, archaeal. This model represents the archaeal branch of the MinD family. MinD, a weak ATPase, works in bacteria with MinC as a generalized cell division inhibitor and, through interaction with MinE, prevents septum placement inappropriate sites. Often several members of this family are found in archaeal genomes, and the function is uncharacterized. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. The exact roles of the various archaeal MinD homologs are unknown.
Probab=39.68 E-value=45 Score=25.49 Aligned_cols=38 Identities=21% Similarity=0.270 Sum_probs=27.1
Q ss_pred EEEEEcCCCCCCCCcchHHHHHHHHHcCccEEEEcccc
Q 022960 47 LVIVCHGFQSTKDRIPMVNLAAALEREGISAFRFDFSG 84 (289)
Q Consensus 47 ~iv~~hG~~~~~~~~~~~~~~~~l~~~G~~v~~~d~~G 84 (289)
+|.+..+=||.+.+..-..++..|++.|++|+.+|+--
T Consensus 2 ii~v~~~KGGvGKTt~a~~LA~~la~~g~~VlliD~D~ 39 (251)
T TIGR01969 2 IITIASGKGGTGKTTITANLGVALAKLGKKVLALDADI 39 (251)
T ss_pred EEEEEcCCCCCcHHHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 34555555555544446678889999999999999754
No 402
>TIGR01007 eps_fam capsular exopolysaccharide family. This model describes the capsular exopolysaccharide proteins in bacteria. The exopolysaccharide gene cluster consists of several genes which encode a number of proteins which regulate the exoploysaccharide biosynthesis(EPS). Atleast 13 genes espA to espM in streptococcus species seem to direct the EPS proteins and all of which share high homology. Functional roles were characterized by gene disruption experiments which resulted in exopolysaccharide-deficient phenotypes.
Probab=39.64 E-value=52 Score=24.35 Aligned_cols=39 Identities=13% Similarity=0.186 Sum_probs=27.8
Q ss_pred CcEEEEEcCCCCCCCCcchHHHHHHHHHcCccEEEEccc
Q 022960 45 KQLVIVCHGFQSTKDRIPMVNLAAALEREGISAFRFDFS 83 (289)
Q Consensus 45 ~~~iv~~hG~~~~~~~~~~~~~~~~l~~~G~~v~~~d~~ 83 (289)
...|.+..+-++.+.+..-..++..|+..|++|+.+|.-
T Consensus 17 ~kvI~v~s~kgG~GKTt~a~~LA~~la~~G~rVllID~D 55 (204)
T TIGR01007 17 IKVLLITSVKPGEGKSTTSANIAVAFAQAGYKTLLIDGD 55 (204)
T ss_pred CcEEEEecCCCCCCHHHHHHHHHHHHHhCCCeEEEEeCC
Confidence 345555555555554445677889999999999999874
No 403
>PRK09936 hypothetical protein; Provisional
Probab=39.45 E-value=1.1e+02 Score=24.35 Aligned_cols=28 Identities=14% Similarity=0.340 Sum_probs=25.4
Q ss_pred chHHHHHHHHHcCccEEEEccccCCCCC
Q 022960 62 PMVNLAAALEREGISAFRFDFSGNGESE 89 (289)
Q Consensus 62 ~~~~~~~~l~~~G~~v~~~d~~G~G~s~ 89 (289)
.|+.+.+.+...|++.+.+.+-++|+++
T Consensus 39 qWq~~~~~~~~~G~~tLivQWt~yG~~~ 66 (296)
T PRK09936 39 QWQGLWSQLRLQGFDTLVVQWTRYGDAD 66 (296)
T ss_pred HHHHHHHHHHHcCCcEEEEEeeeccCCC
Confidence 5889999999999999999999999883
No 404
>KOG1202 consensus Animal-type fatty acid synthase and related proteins [Lipid transport and metabolism]
Probab=39.31 E-value=25 Score=33.90 Aligned_cols=24 Identities=29% Similarity=0.353 Sum_probs=16.8
Q ss_pred HHHHHHHhcCCceEEEEEeChhHH
Q 022960 106 AIVQDFCAKGRVITAIIGHSKGGN 129 (289)
Q Consensus 106 ~~i~~l~~~~~~~~~l~G~S~Gg~ 129 (289)
++.+-|...++.+-.++|||.|-.
T Consensus 571 aLtDlLs~lgi~PDGIvGHS~GEl 594 (2376)
T KOG1202|consen 571 ALTDLLSCLGIRPDGIVGHSLGEL 594 (2376)
T ss_pred HHHHHHHhcCCCCCcccccccchh
Confidence 334444444888889999999854
No 405
>COG2236 Predicted phosphoribosyltransferases [General function prediction only]
Probab=39.12 E-value=1e+02 Score=22.82 Aligned_cols=52 Identities=15% Similarity=0.166 Sum_probs=38.7
Q ss_pred cchHHHHHHHHHHHHHHHhcCCceEEEEEeChhHHHHHHHHHhCCCccEEEE
Q 022960 95 GNYRREAEDLRAIVQDFCAKGRVITAIIGHSKGGNAVLLYASKYNDISIVIN 146 (289)
Q Consensus 95 ~~~~~~~~d~~~~i~~l~~~~~~~~~l~G~S~Gg~~a~~~a~~~p~v~~~v~ 146 (289)
.++++.-.....+.+.+.+.+..+=++++-.-||.+...+.+.+-.++-+..
T Consensus 7 vSw~~I~~~~~~lA~kI~~s~~~PDvIiaiaRGG~~pariLsd~L~~~~l~~ 58 (192)
T COG2236 7 VSWEEIHRLCRALAEKIRASGFKPDVIVAIARGGLIPARILSDFLGVKPLYS 58 (192)
T ss_pred ecHHHHHHHHHHHHHHHHHcCCCCCEEEEEcCCceehHHHHHHHhCCCceEE
Confidence 4566666667777777776677788999999999999999888755443333
No 406
>PRK14337 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=38.86 E-value=2.5e+02 Score=24.08 Aligned_cols=94 Identities=13% Similarity=0.087 Sum_probs=49.7
Q ss_pred EEEcCCCCCCCCcchHHHHHHHHHcCccEEEEccccCCCCCCC-ccccchH-HHHHHHHHHHHHH---HhcCCceEEEEE
Q 022960 49 IVCHGFQSTKDRIPMVNLAAALEREGISAFRFDFSGNGESEGS-FLYGNYR-REAEDLRAIVQDF---CAKGRVITAIIG 123 (289)
Q Consensus 49 v~~hG~~~~~~~~~~~~~~~~l~~~G~~v~~~d~~G~G~s~~~-~~~~~~~-~~~~d~~~~i~~l---~~~~~~~~~l~G 123 (289)
++++-+|+..+...-..+...|.+.||.+... ...+-- -...++. ...+.....+..+ ++.+.+..+++|
T Consensus 6 ~~i~tlGC~~N~~dse~~~~~l~~~G~~~~~~-----~~ADiiiiNTC~v~~~A~~~~~~~i~~~~~~k~~~p~~~ivv~ 80 (446)
T PRK14337 6 FHIITFGCQMNVNDSDWLARALVARGFTEAPE-----EEARVFIVNTCSVRDKPEQKVYSLLGRIRHATKKNPDVFVAVG 80 (446)
T ss_pred EEEEeeCCCCcHHHHHHHHHHHHHCCCEECCc-----CCCCEEEEeccCeecHHHHHHHHHHHHHHHHHHhCCCCEEEEE
Confidence 56677777665544567888898889976431 111100 0111221 2223344443333 444444456666
Q ss_pred eChhHHHHHHHHHhCCCccEEEEe
Q 022960 124 HSKGGNAVLLYASKYNDISIVINI 147 (289)
Q Consensus 124 ~S~Gg~~a~~~a~~~p~v~~~v~~ 147 (289)
-++-....-.+....|+|+.++.-
T Consensus 81 GC~a~~~~~~~~~~~p~vd~vv~~ 104 (446)
T PRK14337 81 GCVAQQIGSGFFSRFPQVRLVFGT 104 (446)
T ss_pred CCccccccHHHHhhCCCCcEEECC
Confidence 666555555555567777766643
No 407
>TIGR01287 nifH nitrogenase iron protein. This model describes nitrogenase (EC 1.18.6.1) iron protein, also called nitrogenase reductase or nitrogenase component II. This model includes molybdenum-iron nitrogenase reductase (nifH), vanadium-iron nitrogenase reductase (vnfH), and iron-iron nitrogenase reductase (anfH). The model excludes the homologous protein from the light-independent protochlorophyllide reductase.
Probab=38.78 E-value=50 Score=25.87 Aligned_cols=37 Identities=22% Similarity=0.192 Sum_probs=28.5
Q ss_pred cCCCCCCCCcchHHHHHHHHHcCccEEEEccccCCCC
Q 022960 52 HGFQSTKDRIPMVNLAAALEREGISAFRFDFSGNGES 88 (289)
Q Consensus 52 hG~~~~~~~~~~~~~~~~l~~~G~~v~~~d~~G~G~s 88 (289)
-|=||.+.+..-..++..|++.|++|+.+|+--.|..
T Consensus 6 ~gKGGVGKTT~a~nLA~~La~~G~~VlliD~D~q~~~ 42 (275)
T TIGR01287 6 YGKGGIGKSTTTQNIAAALAEMGKKVMIVGCDPKADS 42 (275)
T ss_pred eCCCcCcHHHHHHHHHHHHHHCCCeEEEEeCCCCCCc
Confidence 3767766555567899999999999999998655544
No 408
>TIGR01968 minD_bact septum site-determining protein MinD. This model describes the bacterial and chloroplast form of MinD, a multifunctional cell division protein that guides correct placement of the septum. The homologous archaeal MinD proteins, with many archaeal genomes having two or more forms, are described by a separate model.
Probab=38.77 E-value=49 Score=25.47 Aligned_cols=38 Identities=21% Similarity=0.269 Sum_probs=27.9
Q ss_pred EEEEEcCCCCCCCCcchHHHHHHHHHcCccEEEEcccc
Q 022960 47 LVIVCHGFQSTKDRIPMVNLAAALEREGISAFRFDFSG 84 (289)
Q Consensus 47 ~iv~~hG~~~~~~~~~~~~~~~~l~~~G~~v~~~d~~G 84 (289)
.|.+.-+-||.+.+..-..++..|++.|++|+.+|.--
T Consensus 3 ii~v~s~kGGvGKTt~a~~lA~~la~~g~~vlliD~D~ 40 (261)
T TIGR01968 3 VIVITSGKGGVGKTTTTANLGTALARLGKKVVLIDADI 40 (261)
T ss_pred EEEEecCCCCccHHHHHHHHHHHHHHcCCeEEEEECCC
Confidence 45566666666654456778889999999999999753
No 409
>PF02502 LacAB_rpiB: Ribose/Galactose Isomerase; InterPro: IPR003500 This entry represents the sugar isomerase enzymes ribose 5-phosphate isomerase B (rpiB), galactose isomerase subunit A (LacA) and galactose isomerase subunit B (LacB). Galactose-6-phosphate isomerase (5.3.1.26 from EC) is a heteromultimeric protein consisting of subunits LacA and LacB, and catalyses the conversion of D-galactose 6-phosphate to D-tagatose and 6-phosphate in the tagatose 6-phosphate pathway of lactose catabolism []. Galactose-6-phosphate isomerase is induced by galactose or lactose. This entry represents the LacB subunit. Ribose 5-phosphate isomerase (5.3.1.6 from EC) forms a homodimer and catalyses the interconversion of D-ribose 5-phosphate and D-ribulose 5-phosphate in the non-oxidative branch of the pentose phosphate pathway. This reaction permits the synthesis of ribose from other sugars, as well as the recycling of sugars from nucleotide breakdown. Two unrelated enzymes can catalyse this reaction: RpiA (found in most organisms) and RpiB (found in some bacteria and eukaryotes). RpiB is also involved in metabolism of the rare sugar, allose, in addition to ribose sugars. The structures of RpiA and RpiB are distinct, RpiB having a Rossmann-type alpha/beta/alpha sandwich topology [].; GO: 0005975 carbohydrate metabolic process; PDB: 3HEE_A 3HE8_A 3PH3_B 3PH4_B 3ONO_A 4EM8_B 3S5P_B 1O1X_A 2BES_D 2VVP_D ....
Probab=38.68 E-value=1.3e+02 Score=20.87 Aligned_cols=73 Identities=19% Similarity=0.141 Sum_probs=37.7
Q ss_pred HHHHHHHHHcCccEEEEccccCCCCCCCccccchHHHHHHHHHHHHHHHhcCCce-EEEEEeChhHHHHHHHHHhCCCcc
Q 022960 64 VNLAAALEREGISAFRFDFSGNGESEGSFLYGNYRREAEDLRAIVQDFCAKGRVI-TAIIGHSKGGNAVLLYASKYNDIS 142 (289)
Q Consensus 64 ~~~~~~l~~~G~~v~~~d~~G~G~s~~~~~~~~~~~~~~d~~~~i~~l~~~~~~~-~~l~G~S~Gg~~a~~~a~~~p~v~ 142 (289)
..+.++|.+.||.|+-+-.. +. ...+|.+.+..+...+. +...++ |.+.|...|-.++ |.+.|.|.
T Consensus 15 ~~i~~~L~~~g~eV~D~G~~-----~~--~~~dy~~~a~~va~~V~---~~~~d~GIliCgtGiG~~ia---ANK~~GIr 81 (140)
T PF02502_consen 15 EAIKEYLEEKGYEVIDFGTY-----SE--DSVDYPDFAEKVAEAVA---SGEADRGILICGTGIGMSIA---ANKVPGIR 81 (140)
T ss_dssp HHHHHHHHHTTEEEEEESES-----ST--ST--HHHHHHHHHHHHH---TTSSSEEEEEESSSHHHHHH---HHTSTT--
T ss_pred HHHHHHHHHCCCEEEEeCCC-----CC--CCCCHHHHHHHHHHHHH---cccCCeEEEEcCCChhhhhH---hhcCCCEE
Confidence 45778888889988765432 11 13355555555544443 333333 3444444443333 66888887
Q ss_pred EEEEecc
Q 022960 143 IVINISG 149 (289)
Q Consensus 143 ~~v~~~~ 149 (289)
+.++.++
T Consensus 82 Aa~~~d~ 88 (140)
T PF02502_consen 82 AALCSDP 88 (140)
T ss_dssp EEE-SSH
T ss_pred EEeeCCH
Confidence 7776654
No 410
>PF10566 Glyco_hydro_97: Glycoside hydrolase 97 ; InterPro: IPR019563 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is the 97th family of glycosidases, in this case bacterial. The central part of the GH97 family protein sequences represents a typical and complete (beta/alpha)8-barrel or catalytic TIM-barrel type domain. The N- and C-terminal parts of the sequences, mainly consisting of beta-strands, most probably form two additional non-catalytic domains with as yet unknown functions. The non-catalytic domains of glycosidases from the alpha-galactosidase and alpha-glucosidase superfamilies are also predominantly composed of beta-strands, and at least some of these domains are involved in oligomerisation and carbohydrate binding. In all known glycosidases with the (beta-alpha)8-barrel fold, the amino acid residues at the active site are located on the C-termini of the beta-strands []. ; PDB: 2JKP_A 2JKE_A 2D73_B 2ZQ0_B 2JKA_A 3A24_A.
Probab=38.66 E-value=1.3e+02 Score=23.72 Aligned_cols=64 Identities=17% Similarity=-0.044 Sum_probs=37.6
Q ss_pred hHHHHHHHHHcCccEEEEccccCCCCCCCccccchHHHHHHHHHHHHHHHhcCCceEEEEEeChh
Q 022960 63 MVNLAAALEREGISAFRFDFSGNGESEGSFLYGNYRREAEDLRAIVQDFCAKGRVITAIIGHSKG 127 (289)
Q Consensus 63 ~~~~~~~l~~~G~~v~~~d~~G~G~s~~~~~~~~~~~~~~d~~~~i~~l~~~~~~~~~l~G~S~G 127 (289)
++.+++.-++.|+.-+.+|--=.+..........-..-..|+.+++++.+++++ .|.|..||-+
T Consensus 34 ~k~yIDfAa~~G~eYvlvD~GW~~~~~~~~~d~~~~~~~~dl~elv~Ya~~KgV-gi~lw~~~~~ 97 (273)
T PF10566_consen 34 QKRYIDFAAEMGIEYVLVDAGWYGWEKDDDFDFTKPIPDFDLPELVDYAKEKGV-GIWLWYHSET 97 (273)
T ss_dssp HHHHHHHHHHTT-SEEEEBTTCCGS--TTT--TT-B-TT--HHHHHHHHHHTT--EEEEEEECCH
T ss_pred HHHHHHHHHHcCCCEEEeccccccccccccccccccCCccCHHHHHHHHHHcCC-CEEEEEeCCc
Confidence 677888888899998888753222110000000001113789999999988865 4899999988
No 411
>PHA02518 ParA-like protein; Provisional
Probab=38.52 E-value=52 Score=24.31 Aligned_cols=40 Identities=20% Similarity=0.265 Sum_probs=27.7
Q ss_pred EEEEEcCCCCCCCCcchHHHHHHHHHcCccEEEEccccCC
Q 022960 47 LVIVCHGFQSTKDRIPMVNLAAALEREGISAFRFDFSGNG 86 (289)
Q Consensus 47 ~iv~~hG~~~~~~~~~~~~~~~~l~~~G~~v~~~d~~G~G 86 (289)
+|.+...=||.+.+-.-..++..|++.|+.|+.+|.--.+
T Consensus 2 ii~v~~~KGGvGKTT~a~~la~~la~~g~~vlliD~D~q~ 41 (211)
T PHA02518 2 IIAVLNQKGGAGKTTVATNLASWLHADGHKVLLVDLDPQG 41 (211)
T ss_pred EEEEEcCCCCCCHHHHHHHHHHHHHhCCCeEEEEeCCCCC
Confidence 3445555555554434567888999999999999986444
No 412
>KOG2872 consensus Uroporphyrinogen decarboxylase [Coenzyme transport and metabolism]
Probab=38.49 E-value=31 Score=27.18 Aligned_cols=30 Identities=13% Similarity=0.352 Sum_probs=23.4
Q ss_pred CcEEEEEcCCCCCCCCcchHHHHHHHHHcCccEEEEccc
Q 022960 45 KQLVIVCHGFQSTKDRIPMVNLAAALEREGISAFRFDFS 83 (289)
Q Consensus 45 ~~~iv~~hG~~~~~~~~~~~~~~~~l~~~G~~v~~~d~~ 83 (289)
-|.|+|.-|.++ ..+.|+..||.|+..|+-
T Consensus 252 vPmi~fakG~g~---------~Le~l~~tG~DVvgLDWT 281 (359)
T KOG2872|consen 252 VPMILFAKGSGG---------ALEELAQTGYDVVGLDWT 281 (359)
T ss_pred CceEEEEcCcch---------HHHHHHhcCCcEEeeccc
Confidence 478888877654 346788899999999975
No 413
>COG0489 Mrp ATPases involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=38.36 E-value=72 Score=25.00 Aligned_cols=46 Identities=30% Similarity=0.293 Sum_probs=37.0
Q ss_pred CCcEEEEEcCCCCCCCCcchHHHHHHHHHcCccEEEEccccCCCCC
Q 022960 44 SKQLVIVCHGFQSTKDRIPMVNLAAALEREGISAFRFDFSGNGESE 89 (289)
Q Consensus 44 ~~~~iv~~hG~~~~~~~~~~~~~~~~l~~~G~~v~~~d~~G~G~s~ 89 (289)
....|+..-|-++...+..-..++..+++.|++|..+|.-.+|.+.
T Consensus 56 ~~~~I~V~S~kgGvGKStva~nLA~alA~~G~rVlliDaD~~gps~ 101 (265)
T COG0489 56 VKNVIAVTSGKGGVGKSTVAVNLAAALAQLGKRVLLLDADLRGPSI 101 (265)
T ss_pred cceEEEEEeCCCCCcHHHHHHHHHHHHHhcCCcEEEEeCcCCCCch
Confidence 4567777788777776555678999999999999999988887765
No 414
>PLN02591 tryptophan synthase
Probab=37.81 E-value=1.9e+02 Score=22.47 Aligned_cols=61 Identities=11% Similarity=0.162 Sum_probs=41.3
Q ss_pred hHHHHHHHHHcCcc-EEEEccccCCCCCCCccccchHHHHHHHHHHHHHHHhcCCceEEEEEeChhHHHHHHHHHhCCC
Q 022960 63 MVNLAAALEREGIS-AFRFDFSGNGESEGSFLYGNYRREAEDLRAIVQDFCAKGRVITAIIGHSKGGNAVLLYASKYND 140 (289)
Q Consensus 63 ~~~~~~~l~~~G~~-v~~~d~~G~G~s~~~~~~~~~~~~~~d~~~~i~~l~~~~~~~~~l~G~S~Gg~~a~~~a~~~p~ 140 (289)
...+.+.+.+.|.. ++.+|+| .+....+.+.+++.++..+.++.-+.----.-.++...+.
T Consensus 95 ~~~F~~~~~~aGv~GviipDLP-----------------~ee~~~~~~~~~~~gl~~I~lv~Ptt~~~ri~~ia~~~~g 156 (250)
T PLN02591 95 IDKFMATIKEAGVHGLVVPDLP-----------------LEETEALRAEAAKNGIELVLLTTPTTPTERMKAIAEASEG 156 (250)
T ss_pred HHHHHHHHHHcCCCEEEeCCCC-----------------HHHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHhCCC
Confidence 56678888888876 8889987 2444455555556688889999777765444444555444
No 415
>PRK01906 tetraacyldisaccharide 4'-kinase; Provisional
Probab=37.80 E-value=2.3e+02 Score=23.29 Aligned_cols=42 Identities=21% Similarity=0.226 Sum_probs=28.2
Q ss_pred EEEEEcC--CCCCCCCcchHHHHHHHHHcCccEEEEccccCCCCC
Q 022960 47 LVIVCHG--FQSTKDRIPMVNLAAALEREGISAFRFDFSGNGESE 89 (289)
Q Consensus 47 ~iv~~hG--~~~~~~~~~~~~~~~~l~~~G~~v~~~d~~G~G~s~ 89 (289)
+||.+-- .||++.+.....+++.|.++|+++..+ -||||...
T Consensus 57 PVIsVGNitvGGTGKTP~v~~La~~l~~~G~~~~Il-SRGYg~~~ 100 (338)
T PRK01906 57 PVVVVGNVTVGGTGKTPTVIALVDALRAAGFTPGVV-SRGYGAKI 100 (338)
T ss_pred CEEEECCccCCCCChHHHHHHHHHHHHHcCCceEEE-ecCCCCCC
Confidence 4555543 344444456777888999999987666 48888764
No 416
>PRK07667 uridine kinase; Provisional
Probab=37.65 E-value=62 Score=23.78 Aligned_cols=42 Identities=17% Similarity=0.343 Sum_probs=30.8
Q ss_pred CCcEEEEEcCCCCCCCCcchHHHHHHHHHcCccEEEEccccC
Q 022960 44 SKQLVIVCHGFQSTKDRIPMVNLAAALEREGISAFRFDFSGN 85 (289)
Q Consensus 44 ~~~~iv~~hG~~~~~~~~~~~~~~~~l~~~G~~v~~~d~~G~ 85 (289)
..+.||.+-|..+++.+..-..+.+.|.+.|..+..++...+
T Consensus 15 ~~~~iIgI~G~~gsGKStla~~L~~~l~~~~~~~~~i~~Dd~ 56 (193)
T PRK07667 15 ENRFILGIDGLSRSGKTTFVANLKENMKQEGIPFHIFHIDDY 56 (193)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEEcCcc
Confidence 345889999999988765566677777777888777766553
No 417
>KOG1209 consensus 1-Acyl dihydroxyacetone phosphate reductase and related dehydrogenases [Secondary metabolites biosynthesis, transport and catabolism]
Probab=37.54 E-value=68 Score=24.29 Aligned_cols=37 Identities=19% Similarity=0.162 Sum_probs=27.4
Q ss_pred CCcEEEEEcCCCCCCCCcchHHHHHHHHHcCccEEEEccc
Q 022960 44 SKQLVIVCHGFQSTKDRIPMVNLAAALEREGISAFRFDFS 83 (289)
Q Consensus 44 ~~~~iv~~hG~~~~~~~~~~~~~~~~l~~~G~~v~~~d~~ 83 (289)
+.+..|++-|....+ .-..++..|++.||.|++--.+
T Consensus 5 ~~~k~VlItgcs~GG---IG~ala~ef~~~G~~V~AtaR~ 41 (289)
T KOG1209|consen 5 SQPKKVLITGCSSGG---IGYALAKEFARNGYLVYATARR 41 (289)
T ss_pred cCCCeEEEeecCCcc---hhHHHHHHHHhCCeEEEEEccc
Confidence 556677777766554 2467899999999999987544
No 418
>COG1448 TyrB Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism]
Probab=36.99 E-value=2.5e+02 Score=23.48 Aligned_cols=88 Identities=19% Similarity=0.256 Sum_probs=54.4
Q ss_pred CCcEEEEEcCCCCCCCC-----cchHHHHHHHHHcCccEEEEccccCCCCCCCccccchHHHHHHHHHHHHHHHhcCCce
Q 022960 44 SKQLVIVCHGFQSTKDR-----IPMVNLAAALEREGISAFRFDFSGNGESEGSFLYGNYRREAEDLRAIVQDFCAKGRVI 118 (289)
Q Consensus 44 ~~~~iv~~hG~~~~~~~-----~~~~~~~~~l~~~G~~v~~~d~~G~G~s~~~~~~~~~~~~~~d~~~~i~~l~~~~~~~ 118 (289)
+...||++||-..+... ..|..+++.+.++| .+-.+|.-..|..++ +++.+.-++.++.. ..
T Consensus 170 ~~~~vvLLH~CcHNPTG~D~t~~qW~~l~~~~~~r~-lip~~D~AYQGF~~G------leeDa~~lR~~a~~----~~-- 236 (396)
T COG1448 170 PEGSVVLLHGCCHNPTGIDPTEEQWQELADLIKERG-LIPFFDIAYQGFADG------LEEDAYALRLFAEV----GP-- 236 (396)
T ss_pred CCCCEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcC-Ceeeeehhhhhhccc------hHHHHHHHHHHHHh----CC--
Confidence 34579999997655421 35999999999886 455567655444332 23333344444432 22
Q ss_pred EEEEEeChhHHHHHHHHHhCCC-ccEEEEecc
Q 022960 119 TAIIGHSKGGNAVLLYASKYND-ISIVINISG 149 (289)
Q Consensus 119 ~~l~G~S~Gg~~a~~~a~~~p~-v~~~v~~~~ 149 (289)
-.++..|+.=.+++. .+ |.++.+++.
T Consensus 237 ~~lva~S~SKnfgLY-----gERVGa~~vva~ 263 (396)
T COG1448 237 ELLVASSFSKNFGLY-----GERVGALSVVAE 263 (396)
T ss_pred cEEEEehhhhhhhhh-----hhccceeEEEeC
Confidence 288888877666553 44 888888765
No 419
>PLN02204 diacylglycerol kinase
Probab=36.86 E-value=2.3e+02 Score=25.37 Aligned_cols=34 Identities=12% Similarity=0.229 Sum_probs=24.2
Q ss_pred CCcEEEEEcCCCCCCCC-cchHHHHHHHHHcCccE
Q 022960 44 SKQLVIVCHGFQSTKDR-IPMVNLAAALEREGISA 77 (289)
Q Consensus 44 ~~~~iv~~hG~~~~~~~-~~~~~~~~~l~~~G~~v 77 (289)
.+..+|++|..+|.... ..|..+.+.|...|+.+
T Consensus 159 ~k~llVivNP~sGkg~~~~~~~~V~p~f~~a~i~~ 193 (601)
T PLN02204 159 PKNLLVFVHPLSGKGSGSRTWETVSPIFIRAKVKT 193 (601)
T ss_pred CceEEEEECCCCCCcchHHHHHHHHHHHHHcCCeE
Confidence 45678999987765432 34778888888887663
No 420
>PRK00726 murG undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase; Provisional
Probab=36.86 E-value=2.3e+02 Score=23.05 Aligned_cols=34 Identities=18% Similarity=0.276 Sum_probs=22.6
Q ss_pred EEEEcCCCCCCCCcchHHHHHHHHHcCccEEEEccc
Q 022960 48 VIVCHGFQSTKDRIPMVNLAAALEREGISAFRFDFS 83 (289)
Q Consensus 48 iv~~hG~~~~~~~~~~~~~~~~l~~~G~~v~~~d~~ 83 (289)
++...|.|++-. .+..+++.|.+.|+.|..+-..
T Consensus 5 ~i~~~g~gG~~~--~~~~la~~L~~~g~ev~vv~~~ 38 (357)
T PRK00726 5 LLAGGGTGGHVF--PALALAEELKKRGWEVLYLGTA 38 (357)
T ss_pred EEEcCcchHhhh--HHHHHHHHHHhCCCEEEEEECC
Confidence 344455655442 3568999999999998776443
No 421
>PLN03014 carbonic anhydrase
Probab=36.51 E-value=78 Score=25.83 Aligned_cols=30 Identities=23% Similarity=0.215 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHhcCCceEEEEEeChhHHHHHHH
Q 022960 102 EDLRAIVQDFCAKGRVITAIIGHSKGGNAVLLY 134 (289)
Q Consensus 102 ~d~~~~i~~l~~~~~~~~~l~G~S~Gg~~a~~~ 134 (289)
..+.-++..| +.+.|+|+|||-=|.+...+
T Consensus 208 asLEYAV~~L---~V~~IVV~GHs~CGaV~Aa~ 237 (347)
T PLN03014 208 AAIEYAVLHL---KVENIVVIGHSACGGIKGLM 237 (347)
T ss_pred hHHHHHHHHh---CCCEEEEeCCCCchHHHHHH
Confidence 3444455555 88899999999777665543
No 422
>PRK08939 primosomal protein DnaI; Reviewed
Probab=36.50 E-value=34 Score=27.44 Aligned_cols=37 Identities=16% Similarity=0.204 Sum_probs=28.4
Q ss_pred EEEEEcCCCCCCCCcchHHHHHHHHHcCccEEEEccc
Q 022960 47 LVIVCHGFQSTKDRIPMVNLAAALEREGISAFRFDFS 83 (289)
Q Consensus 47 ~iv~~hG~~~~~~~~~~~~~~~~l~~~G~~v~~~d~~ 83 (289)
.=++++|-.|.+.++....++..+.+.|+.|..+..+
T Consensus 157 ~gl~L~G~~G~GKThLa~Aia~~l~~~g~~v~~~~~~ 193 (306)
T PRK08939 157 KGLYLYGDFGVGKSYLLAAIANELAKKGVSSTLLHFP 193 (306)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEEHH
Confidence 3477888888777666777888888889998877654
No 423
>cd05312 NAD_bind_1_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 1. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists of eukaryotic and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH
Probab=36.35 E-value=51 Score=26.03 Aligned_cols=80 Identities=24% Similarity=0.155 Sum_probs=41.9
Q ss_pred EEEcCCCCCCCCcchHHHHHHHHHcCc-------cEEEEccccCCCCCCCccccchHHHH--------HHHHHHHHHHHh
Q 022960 49 IVCHGFQSTKDRIPMVNLAAALEREGI-------SAFRFDFSGNGESEGSFLYGNYRREA--------EDLRAIVQDFCA 113 (289)
Q Consensus 49 v~~hG~~~~~~~~~~~~~~~~l~~~G~-------~v~~~d~~G~G~s~~~~~~~~~~~~~--------~d~~~~i~~l~~ 113 (289)
|++.|.|.-.- ..-+.+...+.+.|. +++.+|..|-=..+.......-..++ .++.++++.+
T Consensus 28 iv~~GAGsAg~-gia~ll~~~~~~~G~~~eeA~~~i~~vD~~Gll~~~r~~l~~~~~~~a~~~~~~~~~~L~e~i~~v-- 104 (279)
T cd05312 28 ILFLGAGSAGI-GIADLIVSAMVREGLSEEEARKKIWLVDSKGLLTKDRKDLTPFKKPFARKDEEKEGKSLLEVVKAV-- 104 (279)
T ss_pred EEEECcCHHHH-HHHHHHHHHHHHcCCChhhccCeEEEEcCCCeEeCCCCcchHHHHHHHhhcCcccCCCHHHHHHhc--
Confidence 44556654432 234556666666687 89999999853332211000001111 2455555533
Q ss_pred cCCceEEEEEeCh-hHHHHHHH
Q 022960 114 KGRVITAIIGHSK-GGNAVLLY 134 (289)
Q Consensus 114 ~~~~~~~l~G~S~-Gg~~a~~~ 134 (289)
++-+|+|-|- ||.+.-.+
T Consensus 105 ---~ptvlIG~S~~~g~ft~ev 123 (279)
T cd05312 105 ---KPTVLIGLSGVGGAFTEEV 123 (279)
T ss_pred ---CCCEEEEeCCCCCCCCHHH
Confidence 3459999995 66554433
No 424
>PF01580 FtsK_SpoIIIE: FtsK/SpoIIIE family; InterPro: IPR002543 The FtsK/SpoIIIE domain is found extensively in a wide variety of proteins from prokaryotes and plasmids [] some of which contain up to three copies.The domain contains a putative ATP binding P-loop motif. A mutation in FtsK causes a temperature sensitive block in cell division and it is involved in peptidoglycan synthesis or modification []. The SpoIIIE protein is implicated in intercellular chromosomal DNA transfer []. ; GO: 0000166 nucleotide binding, 0003677 DNA binding, 0005524 ATP binding, 0007049 cell cycle, 0007059 chromosome segregation, 0051301 cell division, 0016021 integral to membrane; PDB: 2IUS_E 2IUU_A 2IUT_A.
Probab=36.34 E-value=84 Score=23.23 Aligned_cols=38 Identities=13% Similarity=0.249 Sum_probs=23.3
Q ss_pred EEEcCCCCCCCCcchHHHHHHHHH----cCccEEEEccccCC
Q 022960 49 IVCHGFQSTKDRIPMVNLAAALER----EGISAFRFDFSGNG 86 (289)
Q Consensus 49 v~~hG~~~~~~~~~~~~~~~~l~~----~G~~v~~~d~~G~G 86 (289)
+++-|..+++.+.+...++..++. ....++.+|..|.+
T Consensus 41 ~li~G~tgsGKS~~l~~ll~~l~~~~~p~~~~l~iiD~k~~~ 82 (205)
T PF01580_consen 41 LLIAGATGSGKSTLLRTLLLSLALTYSPDDVQLYIIDPKGSD 82 (205)
T ss_dssp EEEE--TTSSHHHHHHHHHHHHHTT--TTTEEEEEE-TTSSC
T ss_pred EEEEcCCCCCccHHHHHHHHHHHHHhcCCccEEEEEcCCccc
Confidence 344465555554456667777776 57899999998654
No 425
>PRK10425 DNase TatD; Provisional
Probab=36.21 E-value=1.5e+02 Score=23.12 Aligned_cols=51 Identities=18% Similarity=0.082 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHHhcCCceEEEEEeChhHHH-HHHHHHhCCCccEEEEeccCC
Q 022960 101 AEDLRAIVQDFCAKGRVITAIIGHSKGGNA-VLLYASKYNDISIVINISGRF 151 (289)
Q Consensus 101 ~~d~~~~i~~l~~~~~~~~~l~G~S~Gg~~-a~~~a~~~p~v~~~v~~~~~~ 151 (289)
..|..++++...+.++.+++.+|.+..... +..++..+|.|...+.+-|..
T Consensus 14 ~~d~~~vl~~a~~~gv~~~i~~~~~~~~~~~~~~l~~~~~~v~~~~GiHP~~ 65 (258)
T PRK10425 14 AKDRDDVVARAFAAGVNGMLITGTNLRESQQAQKLARQYPSCWSTAGVHPHD 65 (258)
T ss_pred hccHHHHHHHHHHCCCCEEEEeCCCHHHHHHHHHHHHhCCCEEEEEEeCcCc
Confidence 467778888887778889999999988877 566666778766667777743
No 426
>cd03414 CbiX_SirB_C Sirohydrochlorin cobalt chelatase (CbiX) and sirohydrochlorin iron chelatase (SirB), C-terminal domain. SirB catalyzes the ferro-chelation of sirohydrochlorin to siroheme, the prosthetic group of sulfite and nitrite reductases. CbiX is a cobaltochelatase, responsible for the chelation of Co2+ into sirohydrochlorin, an important step in the vitamin B12 biosynthetic pathway. CbiX often contains a C-terminal histidine-rich region that may be important for metal delivery and/or storage, and may also contain an iron-sulfur center. Both CbiX and SirB are found in a wide range of bacteria.
Probab=36.15 E-value=83 Score=20.71 Aligned_cols=27 Identities=22% Similarity=0.331 Sum_probs=16.1
Q ss_pred EEEEEcCCCCCCCCcchHHHHHHHHHc
Q 022960 47 LVIVCHGFQSTKDRIPMVNLAAALERE 73 (289)
Q Consensus 47 ~iv~~hG~~~~~~~~~~~~~~~~l~~~ 73 (289)
.|++-||.........+..++..+.++
T Consensus 3 ~llv~HGS~~~~~~~~~~~l~~~l~~~ 29 (117)
T cd03414 3 VVLVGRGSSDPDANADVAKIARLLEEG 29 (117)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHHHh
Confidence 577778876432212466677777654
No 427
>PF03853 YjeF_N: YjeF-related protein N-terminus; InterPro: IPR004443 The YjeF N-terminal domains occur either as single proteins or fusions with other domains and are commonly associated with enzymes. In bacteria and archaea, YjeF N-terminal domains are often fused to a YjeF C-terminal domain with high structural homology to the members of a ribokinase-like superfamily (see PDOC00806 from PROSITEDOC)and/or belong to operons that encode enzymes of diverse functions: pyridoxal phosphate biosynthetic protein PdxJ; phosphopanteine-protein transferase; ATP/GTP hydrolase; and pyruvate-formate lyase 1-activating enzyme. In plants, the YjeF N-terminal domain is fused to a C-terminal putative pyridoxamine 5'-phosphate oxidase. In eukaryotes, proteins that consist of (Sm)-FDF-YjeF N-terminal domains may be involved in RNA processing [, ]. The YjeF N-terminal domains represent a novel version of the Rossmann fold, one of the most common protein folds in nature observed in numerous enzyme families, that has acquired a set of catalytic residues and structural features that distinguish them from the conventional dehydrogenases. The YjeF N-terminal domain is comprised of a three-layer alpha-beta-alpha sandwich with a central beta-sheet surrounded by helices. The conservation of the acidic residues in the predicted active site of the YjeF N-terminal domains is reminiscent of the presence of such residues in the active sites of diverse hydrolases [, ].; PDB: 3K5W_A 2O8N_A 2DG2_F 3RNO_A 1JZT_B 3D3K_A 3D3J_A 3RSG_A 3RT9_A 3RRF_A ....
Probab=36.11 E-value=34 Score=24.59 Aligned_cols=36 Identities=14% Similarity=0.111 Sum_probs=26.0
Q ss_pred CCCcEEEEEcCCCCCCCCcchHHHHHHHHHcCccEEEE
Q 022960 43 GSKQLVIVCHGFQSTKDRIPMVNLAAALEREGISAFRF 80 (289)
Q Consensus 43 ~~~~~iv~~hG~~~~~~~~~~~~~~~~l~~~G~~v~~~ 80 (289)
...+.|+++-|-|.+... ---.++.|.++|+.|.++
T Consensus 23 ~~~~~v~il~G~GnNGgD--gl~~AR~L~~~G~~V~v~ 58 (169)
T PF03853_consen 23 PKGPRVLILCGPGNNGGD--GLVAARHLANRGYNVTVY 58 (169)
T ss_dssp CTT-EEEEEE-SSHHHHH--HHHHHHHHHHTTCEEEEE
T ss_pred cCCCeEEEEECCCCChHH--HHHHHHHHHHCCCeEEEE
Confidence 456778888888877644 556889999999998873
No 428
>TIGR01281 DPOR_bchL light-independent protochlorophyllide reductase, iron-sulfur ATP-binding protein. The BchL peptide (ChlL in chloroplast and cyanobacteria) is an ATP-binding iron-sulfur protein of the dark form protochlorophyllide reductase, an enzyme similar to nitrogenase. This subunit resembles the nitrogenase NifH subunit.
Probab=36.08 E-value=50 Score=25.73 Aligned_cols=35 Identities=14% Similarity=0.201 Sum_probs=26.2
Q ss_pred CCCCCCCCcchHHHHHHHHHcCccEEEEccccCCC
Q 022960 53 GFQSTKDRIPMVNLAAALEREGISAFRFDFSGNGE 87 (289)
Q Consensus 53 G~~~~~~~~~~~~~~~~l~~~G~~v~~~d~~G~G~ 87 (289)
|=||.+.+..-..++..|+++|++|+.+|+--.|.
T Consensus 7 gKGGVGKTT~~~nLA~~La~~g~rVLliD~D~q~~ 41 (268)
T TIGR01281 7 GKGGIGKSTTSSNLSVAFAKLGKRVLQIGCDPKHD 41 (268)
T ss_pred cCCcCcHHHHHHHHHHHHHhCCCeEEEEecCcccc
Confidence 66666554346678889999999999999865443
No 429
>cd02040 NifH NifH gene encodes component II (iron protein) of nitrogenase. Nitrogenase is responsible for the biological nitrogen fixation, i.e. reduction of molecular nitrogen to ammonia. NifH consists of two oxygen-sensitive metallosulfur proteins: the mollybdenum-iron (alternatively, vanadium-iron or iron-iron) protein (commonly referred to as component 1), and the iron protein (commonly referred to as component 2). The iron protein is a homodimer, with an Fe4S4 cluster bound between the subunits and two ATP-binding domains. It supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component 1 for the reduction of molecular nitrogen to ammonia.
Probab=35.98 E-value=59 Score=25.26 Aligned_cols=41 Identities=20% Similarity=0.217 Sum_probs=30.3
Q ss_pred EEEEEcCCCCCCCCcchHHHHHHHHHcCccEEEEccccCCCC
Q 022960 47 LVIVCHGFQSTKDRIPMVNLAAALEREGISAFRFDFSGNGES 88 (289)
Q Consensus 47 ~iv~~hG~~~~~~~~~~~~~~~~l~~~G~~v~~~d~~G~G~s 88 (289)
+|.+. |=||.+.+..-..++..|++.|++|+.+|.--.|..
T Consensus 3 ~iav~-~KGGvGKTT~~~nLA~~La~~G~kVlliD~Dpq~n~ 43 (270)
T cd02040 3 QIAIY-GKGGIGKSTTTQNLSAALAEMGKKVMIVGCDPKADS 43 (270)
T ss_pred EEEEE-eCCcCCHHHHHHHHHHHHHhCCCeEEEEEcCCCCCc
Confidence 35555 666666554567899999999999999998755544
No 430
>TIGR03018 pepcterm_TyrKin exopolysaccharide/PEPCTERM locus tyrosine autokinase. Members of this protein family are related to a known protein-tyrosine autokinase and to numerous homologs from exopolysaccharide biosynthesis region proteins, many of which are designated as chain length determinants. Most members of this family contain a short region, immediately C-terminal to the region modeled here, with an abundance of Tyr residues. These C-terminal tyrosine residues are likely to be autophosphorylation sites. Some members of this family are fusion proteins.
Probab=35.96 E-value=75 Score=23.62 Aligned_cols=40 Identities=18% Similarity=0.306 Sum_probs=29.2
Q ss_pred CCcEEEEEcCCCCCCCCcchHHHHHHHHH-cCccEEEEccc
Q 022960 44 SKQLVIVCHGFQSTKDRIPMVNLAAALER-EGISAFRFDFS 83 (289)
Q Consensus 44 ~~~~iv~~hG~~~~~~~~~~~~~~~~l~~-~G~~v~~~d~~ 83 (289)
....|.++-+-+|.+.+..-..++..|+. .|++|+.+|.-
T Consensus 34 ~~~vi~v~s~kgG~GkSt~a~nLA~~la~~~g~~VLlvD~D 74 (207)
T TIGR03018 34 NNNLIMVTSSLPGEGKSFTAINLAISLAQEYDKTVLLIDAD 74 (207)
T ss_pred CCeEEEEECCCCCCCHHHHHHHHHHHHHHhcCCeEEEEECC
Confidence 45567777666666655456678889986 59999998865
No 431
>TIGR02016 BchX chlorophyllide reductase iron protein subunit X. This model represents the X subunit of the three-subunit enzyme, (bacterio)chlorophyllide reductase. This enzyme is responsible for the reduction of the chlorin B-ring and is closely related to the protochlorophyllide reductase complex which reduces the D-ring. Both of these complexes in turn are homologous to nitrogenase. This subunit is homologous to the nitrogenase component II, or "iron" protein.
Probab=35.96 E-value=52 Score=26.26 Aligned_cols=36 Identities=11% Similarity=0.238 Sum_probs=27.1
Q ss_pred EEEEcCCCCCCCCcchHHHHHHHHHcCccEEEEcccc
Q 022960 48 VIVCHGFQSTKDRIPMVNLAAALEREGISAFRFDFSG 84 (289)
Q Consensus 48 iv~~hG~~~~~~~~~~~~~~~~l~~~G~~v~~~d~~G 84 (289)
|.++ |=||.+.+..-..++..|++.|++|+.+|.--
T Consensus 3 Iav~-gKGGvGKTT~a~nLA~~La~~g~rVLlID~Dp 38 (296)
T TIGR02016 3 IAIY-GKGGSGKSFTTTNLSHMMAEMGKRVLQLGCDP 38 (296)
T ss_pred EEEE-CCCCCCHHHHHHHHHHHHHHCCCeEEEEEecC
Confidence 4444 76766655456788999999999999999853
No 432
>PF02633 Creatininase: Creatinine amidohydrolase; InterPro: IPR003785 This family includes the enzymes creatininase and 2-amino-5-formylamino-6-ribosylaminopyrimidin-4(3H)-one 5'-monophosphate deformylase, also known as formamide hydrolase. Creatinase or creatinine amidohydrolase (3.5.2.10 from EC) catalyses the hydrolysis of creatinine to creatine, which can then be metabolised to urea and sarcosine by creatinase (3.5.3.3 from EC). Creatininase is a member of the urease-related amidohydrolase superfamily []. Formamide hydrolase catalyzes the hydrolysis of the formamide of 2-amino-5-formylamino-6-ribosylamino-4(3H)-pyrimidinone 5'-monophosphate (FAPy) to form 2,5-diamino-6-ribosylamino-4(3H)-pyrimidinone 5'-phosphate (APy) (3.5.1.102 from EC). ; PDB: 3A6K_F 3A6F_A 3A6D_B 1J2U_B 3A6J_C 1J2T_A 3A6G_C 3A6H_F 1Q3K_E 3A6L_C ....
Probab=35.90 E-value=2e+02 Score=22.02 Aligned_cols=74 Identities=18% Similarity=0.076 Sum_probs=37.1
Q ss_pred hHHHHHHHHHc-CccEEEEccccCCCCCCCcc-----ccchHHHHHHHHHHHHHHHhcCCceEEEEEeChhHHHHHHHHH
Q 022960 63 MVNLAAALERE-GISAFRFDFSGNGESEGSFL-----YGNYRREAEDLRAIVQDFCAKGRVITAIIGHSKGGNAVLLYAS 136 (289)
Q Consensus 63 ~~~~~~~l~~~-G~~v~~~d~~G~G~s~~~~~-----~~~~~~~~~d~~~~i~~l~~~~~~~~~l~G~S~Gg~~a~~~a~ 136 (289)
-..+++..+++ |-.++.+-++ +|.|..... ..+.+.+..-+.++++.+...+.++++++..--|-.-++..+.
T Consensus 42 a~~~a~~~a~~~~~~lv~P~i~-yG~s~~h~~fpGTisl~~~t~~~~l~di~~sl~~~Gf~~ivivngHgGN~~~l~~~~ 120 (237)
T PF02633_consen 42 AEAVAERAAERLGEALVLPPIP-YGCSPHHMGFPGTISLSPETLIALLRDILRSLARHGFRRIVIVNGHGGNIAALEAAA 120 (237)
T ss_dssp HHHHHHHHHHHHTHEEE---B---BB-GCCTTSTT-BBB-HHHHHHHHHHHHHHHHHHT--EEEEEESSTTHHHHHHHHH
T ss_pred HHHHHHHHHHHCCcEEEeCCCc-cccCcccCCCCCeEEeCHHHHHHHHHHHHHHHHHcCCCEEEEEECCHhHHHHHHHHH
Confidence 44566666655 3233333333 454433211 2233555666777777777779999888777666444555554
Q ss_pred h
Q 022960 137 K 137 (289)
Q Consensus 137 ~ 137 (289)
+
T Consensus 121 ~ 121 (237)
T PF02633_consen 121 R 121 (237)
T ss_dssp H
T ss_pred H
Confidence 3
No 433
>cd02032 Bchl_like This family of proteins contains bchL and chlL. Protochlorophyllide reductase catalyzes the reductive formation of chlorophyllide from protochlorophyllide during biosynthesis of chlorophylls and bacteriochlorophylls. Three genes, bchL, bchN and bchB, are involved in light-independent protochlorophyllide reduction in bacteriochlorophyll biosynthesis. In cyanobacteria, algae, and gymnosperms, three similar genes, chlL, chlN and chlB are involved in protochlorophyllide reduction during chlorophylls biosynthesis. BchL/chlL, bchN/chlN and bchB/chlB exhibit significant sequence similarity to the nifH, nifD and nifK subunits of nitrogenase, respectively. Nitrogenase catalyzes the reductive formation of ammonia from dinitrogen.
Probab=35.75 E-value=48 Score=25.84 Aligned_cols=34 Identities=18% Similarity=0.234 Sum_probs=25.9
Q ss_pred CCCCCCCCcchHHHHHHHHHcCccEEEEccccCC
Q 022960 53 GFQSTKDRIPMVNLAAALEREGISAFRFDFSGNG 86 (289)
Q Consensus 53 G~~~~~~~~~~~~~~~~l~~~G~~v~~~d~~G~G 86 (289)
|=||.+.+..-..++..|+++|++|+.+|.--.|
T Consensus 7 gKGGvGKTT~a~nLA~~la~~G~rvlliD~Dpq~ 40 (267)
T cd02032 7 GKGGIGKSTTSSNLSVALAKRGKKVLQIGCDPKH 40 (267)
T ss_pred cCCCCCHHHHHHHHHHHHHHCCCcEEEEecCCCC
Confidence 6666655445678899999999999999986444
No 434
>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.
Probab=35.66 E-value=60 Score=20.67 Aligned_cols=35 Identities=31% Similarity=0.357 Sum_probs=22.7
Q ss_pred EEEcCCCCCCCCcchHHHHHHHHHcCccEEEEccc
Q 022960 49 IVCHGFQSTKDRIPMVNLAAALEREGISAFRFDFS 83 (289)
Q Consensus 49 v~~hG~~~~~~~~~~~~~~~~l~~~G~~v~~~d~~ 83 (289)
.+...-|+.+.+..-..++..++++|.+|+.+|.-
T Consensus 3 ~~~~~kgG~Gkst~~~~la~~~~~~~~~vl~~d~d 37 (104)
T cd02042 3 AVANQKGGVGKTTTAVNLAAALARRGKRVLLIDLD 37 (104)
T ss_pred EEEeCCCCcCHHHHHHHHHHHHHhCCCcEEEEeCC
Confidence 34444444444334567888888888888888754
No 435
>PF01935 DUF87: Domain of unknown function DUF87; InterPro: IPR002789 The function of this domain is unknown. It contains several conserved aspartates and histidines that could be metal ligands.
Probab=35.55 E-value=50 Score=24.95 Aligned_cols=34 Identities=21% Similarity=0.258 Sum_probs=26.6
Q ss_pred EcCCCCCCCCcchHHHHHHHH-HcCccEEEEcccc
Q 022960 51 CHGFQSTKDRIPMVNLAAALE-REGISAFRFDFSG 84 (289)
Q Consensus 51 ~hG~~~~~~~~~~~~~~~~l~-~~G~~v~~~d~~G 84 (289)
+=|..|++.++....+.+.+. ..|+.++.+|.-|
T Consensus 28 I~G~TGsGKS~~~~~ll~~l~~~~~~~~ii~D~~G 62 (229)
T PF01935_consen 28 IFGTTGSGKSNTVKVLLEELLKKKGAKVIIFDPHG 62 (229)
T ss_pred EECCCCCCHHHHHHHHHHHHHhcCCCCEEEEcCCC
Confidence 336666666666788888988 7799999999865
No 436
>PRK00923 sirohydrochlorin cobaltochelatase; Reviewed
Probab=35.30 E-value=1.4e+02 Score=20.04 Aligned_cols=28 Identities=18% Similarity=0.351 Sum_probs=16.5
Q ss_pred cEEEEEcCCCCCCCCcchHHHHHHHHHc
Q 022960 46 QLVIVCHGFQSTKDRIPMVNLAAALERE 73 (289)
Q Consensus 46 ~~iv~~hG~~~~~~~~~~~~~~~~l~~~ 73 (289)
..|++-||.........+..+.+.+.++
T Consensus 3 ~lvlv~hGS~~~~~~~~~~~~~~~l~~~ 30 (126)
T PRK00923 3 GLLLVGHGSRLPYNKEVVTKIAEKIKEK 30 (126)
T ss_pred EEEEEeCCCCChHHHHHHHHHHHHHHHh
Confidence 4577778876432212356667777654
No 437
>PRK14325 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=35.24 E-value=2.9e+02 Score=23.68 Aligned_cols=93 Identities=12% Similarity=0.045 Sum_probs=47.7
Q ss_pred EEEcCCCCCCCCcchHHHHHHHHHcCccEEEEccccCCCCCCC-ccccchH-HHHHHHHHH---HHHHHhcCCceEEEEE
Q 022960 49 IVCHGFQSTKDRIPMVNLAAALEREGISAFRFDFSGNGESEGS-FLYGNYR-REAEDLRAI---VQDFCAKGRVITAIIG 123 (289)
Q Consensus 49 v~~hG~~~~~~~~~~~~~~~~l~~~G~~v~~~d~~G~G~s~~~-~~~~~~~-~~~~d~~~~---i~~l~~~~~~~~~l~G 123 (289)
++++.+|+..+...-..+...|.+.||.++-- .. ..+-- -...++. ...+.+... +..+++......+++|
T Consensus 6 ~~i~t~GC~~N~~ds~~~~~~l~~~g~~~~~~-~~---~aDvviinTC~v~~~a~~~~~~~i~~~~~~k~~~p~~~vvvg 81 (444)
T PRK14325 6 LYIKTYGCQMNEYDSSKMADLLGAEGYELTDD-PE---EADLILLNTCSIREKAQEKVFSELGRWRKLKEKNPDLIIGVG 81 (444)
T ss_pred EEEEEcCCCCcHHHHHHHHHHHHHCcCEECCC-cC---CCCEEEEEcceeeehHHHHHHHHHHHHHHHHHhCCCCEEEEE
Confidence 66777787766544567888898889876631 00 00000 0011111 111233333 3333444444456666
Q ss_pred eChhHHHHHHHHHhCCCccEEE
Q 022960 124 HSKGGNAVLLYASKYNDISIVI 145 (289)
Q Consensus 124 ~S~Gg~~a~~~a~~~p~v~~~v 145 (289)
-++-....-.++...|.++.++
T Consensus 82 Gc~as~~~ee~~~~~~~vD~vv 103 (444)
T PRK14325 82 GCVAQQEGEEILKRAPYVDIVF 103 (444)
T ss_pred CchhccCHHHHHhhCCCCcEEE
Confidence 6666655555555567676665
No 438
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=35.21 E-value=54 Score=24.02 Aligned_cols=29 Identities=28% Similarity=0.332 Sum_probs=19.4
Q ss_pred EEcCCCCCCCCcchHHHHHHHHHcCccEEEEccc
Q 022960 50 VCHGFQSTKDRIPMVNLAAALEREGISAFRFDFS 83 (289)
Q Consensus 50 ~~hG~~~~~~~~~~~~~~~~l~~~G~~v~~~d~~ 83 (289)
.+.|.|.- -..++-.|++.|+.|+.+|.-
T Consensus 4 ~ViGlGyv-----Gl~~A~~lA~~G~~V~g~D~~ 32 (185)
T PF03721_consen 4 AVIGLGYV-----GLPLAAALAEKGHQVIGVDID 32 (185)
T ss_dssp EEE--STT-----HHHHHHHHHHTTSEEEEE-S-
T ss_pred EEECCCcc-----hHHHHHHHHhCCCEEEEEeCC
Confidence 34466644 356888999999999999975
No 439
>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]
Probab=35.14 E-value=2.2e+02 Score=22.39 Aligned_cols=32 Identities=22% Similarity=0.172 Sum_probs=24.2
Q ss_pred EEEEcCCCCCCCCcchHHHHHHHHHcCccEEEEccc
Q 022960 48 VIVCHGFQSTKDRIPMVNLAAALEREGISAFRFDFS 83 (289)
Q Consensus 48 iv~~hG~~~~~~~~~~~~~~~~l~~~G~~v~~~d~~ 83 (289)
-+++-|..+.. -..+++.|+++|++++.+-.+
T Consensus 8 ~~lITGASsGI----G~~~A~~lA~~g~~liLvaR~ 39 (265)
T COG0300 8 TALITGASSGI----GAELAKQLARRGYNLILVARR 39 (265)
T ss_pred EEEEECCCchH----HHHHHHHHHHCCCEEEEEeCc
Confidence 34555655543 578999999999999999766
No 440
>COG3946 VirJ Type IV secretory pathway, VirJ component [Intracellular trafficking and secretion]
Probab=35.07 E-value=94 Score=26.09 Aligned_cols=103 Identities=17% Similarity=0.133 Sum_probs=58.4
Q ss_pred CCcEEEEEcCCCCCCCCcchHHHHHHHHHcCccEEEEccccCCCCCCCccccchHHHHHHHHHHHHHHHhc----CCceE
Q 022960 44 SKQLVIVCHGFQSTKDRIPMVNLAAALEREGISAFRFDFSGNGESEGSFLYGNYRREAEDLRAIVQDFCAK----GRVIT 119 (289)
Q Consensus 44 ~~~~iv~~hG~~~~~~~~~~~~~~~~l~~~G~~v~~~d~~G~G~s~~~~~~~~~~~~~~d~~~~i~~l~~~----~~~~~ 119 (289)
...+++++--..+..+. -....+.+.+.|+-|+-+|..++=..-...+.. .-..+.|++++.+++... ....-
T Consensus 47 ~~~~villSd~~G~~d~--~~s~a~al~~~~Alv~~vd~~~ylaaL~~dd~e-cvylisd~Ealsr~~Qr~a~~g~yr~P 123 (456)
T COG3946 47 PQGLVILLSDEAGIGDQ--ERSRADALLARGALVAPVDLGAYLAALGADDNE-CVYLISDFEALSREAQRAADLGVYRLP 123 (456)
T ss_pred cceeeEEEEcccChhhh--hcchhHHHhhcCCeeeccccchhhhccccCCCc-ceEEehhHHHHhHHHHHHhhccCcccc
Confidence 33455555443333332 344567788888999999988663322211100 011123333333333221 23345
Q ss_pred EEEEeChhHHHHHHHHHhCCC--ccEEEEecc
Q 022960 120 AIIGHSKGGNAVLLYASKYND--ISIVINISG 149 (289)
Q Consensus 120 ~l~G~S~Gg~~a~~~a~~~p~--v~~~v~~~~ 149 (289)
+|.|---||.++...++..|. +.+.+.+.+
T Consensus 124 Vl~g~g~Gg~~A~asaaqSp~atlag~Vsldp 155 (456)
T COG3946 124 VLTGPGQGGTLAYASAAQSPDATLAGAVSLDP 155 (456)
T ss_pred eEeecCCCcHHHHHHHhhChhhhhcCccCCCC
Confidence 888999999999999988877 777666654
No 441
>PRK13768 GTPase; Provisional
Probab=35.00 E-value=48 Score=25.70 Aligned_cols=35 Identities=14% Similarity=0.196 Sum_probs=26.5
Q ss_pred EEEEcCCCCCCCCcchHHHHHHHHHcCccEEEEcc
Q 022960 48 VIVCHGFQSTKDRIPMVNLAAALEREGISAFRFDF 82 (289)
Q Consensus 48 iv~~hG~~~~~~~~~~~~~~~~l~~~G~~v~~~d~ 82 (289)
++++-|.+|.+.+.....++..+...|.+|+.+|+
T Consensus 4 ~i~v~G~~G~GKTt~~~~~~~~l~~~g~~v~~i~~ 38 (253)
T PRK13768 4 IVFFLGTAGSGKTTLTKALSDWLEEQGYDVAIVNL 38 (253)
T ss_pred EEEEECCCCccHHHHHHHHHHHHHhcCCceEEEEC
Confidence 56666777777655567788888888999888875
No 442
>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []. It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.
Probab=34.64 E-value=36 Score=25.16 Aligned_cols=41 Identities=17% Similarity=0.157 Sum_probs=22.7
Q ss_pred cCCCcEEEEEcCCCCCCCCcchHHHHHHHHHcCccEEEEcc
Q 022960 42 TGSKQLVIVCHGFQSTKDRIPMVNLAAALEREGISAFRFDF 82 (289)
Q Consensus 42 ~~~~~~iv~~hG~~~~~~~~~~~~~~~~l~~~G~~v~~~d~ 82 (289)
+...|.++++-|.+|++.+.+...+...+...|+.++-.|.
T Consensus 11 ~~~~P~~~i~aG~~GsGKSt~~~~~~~~~~~~~~v~i~~D~ 51 (199)
T PF06414_consen 11 PQEKPTLIIIAGQPGSGKSTLARQLLEEFGGGGIVVIDADE 51 (199)
T ss_dssp --SS-EEEEEES-TTSTTHHHHHHHHHHT-TT-SEEE-GGG
T ss_pred cccCCEEEEEeCCCCCCHHHHHHHhhhhccCCCeEEEehHH
Confidence 45789999999999988764555555554323455555553
No 443
>PRK00131 aroK shikimate kinase; Reviewed
Probab=34.54 E-value=71 Score=22.61 Aligned_cols=34 Identities=24% Similarity=0.293 Sum_probs=23.7
Q ss_pred CcEEEEEcCCCCCCCCcchHHHHHHHHHc-CccEEEEcc
Q 022960 45 KQLVIVCHGFQSTKDRIPMVNLAAALERE-GISAFRFDF 82 (289)
Q Consensus 45 ~~~iv~~hG~~~~~~~~~~~~~~~~l~~~-G~~v~~~d~ 82 (289)
.+.+|++.|.+|++. ..+++.|++. |+.++..|.
T Consensus 3 ~~~~i~l~G~~GsGK----stla~~La~~l~~~~~d~d~ 37 (175)
T PRK00131 3 KGPNIVLIGFMGAGK----STIGRLLAKRLGYDFIDTDH 37 (175)
T ss_pred CCCeEEEEcCCCCCH----HHHHHHHHHHhCCCEEEChH
Confidence 456888899998884 4466666665 677776654
No 444
>cd02117 NifH_like This family contains the NifH (iron protein) of nitrogenase, L subunit (BchL/ChlL) of the protochlorophyllide reductase and the BchX subunit of the Chlorophyllide reductase. Members of this family use energey from ATP hydrolysis and transfer electrons through a Fe4-S4 cluster to other subunit for reduction of substrate.
Probab=34.40 E-value=71 Score=23.84 Aligned_cols=36 Identities=22% Similarity=0.249 Sum_probs=27.4
Q ss_pred CCCCCCCCcchHHHHHHHHHcCccEEEEccccCCCC
Q 022960 53 GFQSTKDRIPMVNLAAALEREGISAFRFDFSGNGES 88 (289)
Q Consensus 53 G~~~~~~~~~~~~~~~~l~~~G~~v~~~d~~G~G~s 88 (289)
|=||.+.+..-..++..|++.|++|+.+|.--.|.+
T Consensus 7 gKGGvGKTt~~~nLA~~la~~G~rvLliD~D~q~~~ 42 (212)
T cd02117 7 GKGGIGKSTTSQNLSAALAEMGKKVLQVGCDPKADS 42 (212)
T ss_pred CCCcCcHHHHHHHHHHHHHHCCCcEEEEeCCCCCCc
Confidence 666666544567899999999999999998755543
No 445
>PRK13236 nitrogenase reductase; Reviewed
Probab=34.25 E-value=69 Score=25.56 Aligned_cols=42 Identities=17% Similarity=0.101 Sum_probs=30.9
Q ss_pred EEEEcCCCCCCCCcchHHHHHHHHHcCccEEEEccccCCCCC
Q 022960 48 VIVCHGFQSTKDRIPMVNLAAALEREGISAFRFDFSGNGESE 89 (289)
Q Consensus 48 iv~~hG~~~~~~~~~~~~~~~~l~~~G~~v~~~d~~G~G~s~ 89 (289)
+|-+.|=||.+.+..-..++-.|++.|++|+.+|.--++.+.
T Consensus 8 ~~~~~GKGGVGKTt~a~NLA~~La~~G~rVLliD~D~q~~~~ 49 (296)
T PRK13236 8 QIAFYGKGGIGKSTTSQNTLAAMAEMGQRILIVGCDPKADST 49 (296)
T ss_pred EEEEECCCcCCHHHHHHHHHHHHHHCCCcEEEEEccCCCCcc
Confidence 344477777665545678899999999999999986555444
No 446
>TIGR00689 rpiB_lacA_lacB sugar-phosphate isomerases, RpiB/LacA/LacB family. Proteins of known function in this family act as sugar (pentose and/or hexose)-phosphate isomerases, including the LacA and LacB subunits of galactose-6-phosphate isomerases from Gram-positive bacteria and RpiB. RpiB is the second ribose phosphate isomerase of E. coli. It lacks homology to RpiA, its inducer is unknown (but is not ribose), and it can be replaced by the homologous galactose-6-phosphate isomerase of Streptococcus mutans, all of which suggests that the ribose phosphate isomerase activity of RpiB is a secondary function. On the other hand, there appear to be a significant number of species which contain rpiB, lack rpiA and seem to require rpi activity in order to copplete the pentose phosphate pathway.
Probab=33.92 E-value=1.7e+02 Score=20.55 Aligned_cols=73 Identities=16% Similarity=0.157 Sum_probs=40.5
Q ss_pred HHHHHHHHHcCccEEEEccccCCCCCCCccccchHHHHHHHHHHHHHHHhcCCce-EEEEEeChhHHHHHHHHHhCCCcc
Q 022960 64 VNLAAALEREGISAFRFDFSGNGESEGSFLYGNYRREAEDLRAIVQDFCAKGRVI-TAIIGHSKGGNAVLLYASKYNDIS 142 (289)
Q Consensus 64 ~~~~~~l~~~G~~v~~~d~~G~G~s~~~~~~~~~~~~~~d~~~~i~~l~~~~~~~-~~l~G~S~Gg~~a~~~a~~~p~v~ 142 (289)
..+.+.|.+.||.|+-+-. .+. ...+|.+.+..+...+. +...++ |.+.|...|-.++ |.+.|.|+
T Consensus 14 ~~l~~~L~~~g~eV~D~G~-----~~~--~~~dYpd~a~~va~~V~---~g~~~~GIliCGtGiG~sia---ANK~~GIr 80 (144)
T TIGR00689 14 SEIIEHLKQKGHEVIDCGT-----LYD--ERVDYPDYAKLVADKVV---AGEVSLGILICGTGIGMSIA---ANKFKGIR 80 (144)
T ss_pred HHHHHHHHHCCCEEEEcCC-----CCC--CCCChHHHHHHHHHHHH---cCCCceEEEEcCCcHHHHHH---HhcCCCeE
Confidence 4577888899998864421 111 12356666655555543 223332 4455555554443 56788877
Q ss_pred EEEEecc
Q 022960 143 IVINISG 149 (289)
Q Consensus 143 ~~v~~~~ 149 (289)
+.++.++
T Consensus 81 aa~~~d~ 87 (144)
T TIGR00689 81 AALCVDE 87 (144)
T ss_pred EEEECCH
Confidence 7776554
No 447
>PRK13235 nifH nitrogenase reductase; Reviewed
Probab=33.84 E-value=56 Score=25.59 Aligned_cols=39 Identities=15% Similarity=0.159 Sum_probs=27.9
Q ss_pred EEEEcCCCCCCCCcchHHHHHHHHHcCccEEEEccccCCC
Q 022960 48 VIVCHGFQSTKDRIPMVNLAAALEREGISAFRFDFSGNGE 87 (289)
Q Consensus 48 iv~~hG~~~~~~~~~~~~~~~~l~~~G~~v~~~d~~G~G~ 87 (289)
|-+. |=||.+.+..-..++-.|++.|++|+.+|.--.|.
T Consensus 4 iav~-~KGGVGKTT~~~nLA~~La~~G~rVLlID~Dpq~~ 42 (274)
T PRK13235 4 VAIY-GKGGIGKSTTTQNTVAGLAEMGKKVMVVGCDPKAD 42 (274)
T ss_pred EEEe-CCCCccHHHHHHHHHHHHHHCCCcEEEEecCCccc
Confidence 4455 56665544446778999999999999998854443
No 448
>PRK10812 putative DNAse; Provisional
Probab=33.67 E-value=1.5e+02 Score=23.25 Aligned_cols=51 Identities=6% Similarity=0.084 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHHhcCCceEEEEEeChhHHH-HHHHHHhCCCccEEEEeccCC
Q 022960 101 AEDLRAIVQDFCAKGRVITAIIGHSKGGNA-VLLYASKYNDISIVINISGRF 151 (289)
Q Consensus 101 ~~d~~~~i~~l~~~~~~~~~l~G~S~Gg~~-a~~~a~~~p~v~~~v~~~~~~ 151 (289)
..|..++++...+.++..++.+|.+..... ++.++..+|.|...+.+-|..
T Consensus 19 ~~d~~~vl~~a~~~gv~~~~~~~~~~~~~~~~~~l~~~~~~v~~~~GiHP~~ 70 (265)
T PRK10812 19 HKDVDDVLAKAAARDVKFCLAVATTLPGYRHMRDLVGERDNVVFSCGVHPLN 70 (265)
T ss_pred hcCHHHHHHHHHHcCCCEEEEeCCCHHHHHHHHHHHhhCCCeEEEEEeCCCC
Confidence 357777888887778999999999998877 556666778776667777754
No 449
>cd08162 MPP_PhoA_N Synechococcus sp. strain PCC 7942 PhoA and related proteins, N-terminal metallophosphatase domain. Synechococcus sp. strain PCC 7942 PhoA is a large atypical alkaline phosphatase. It is known to be transported across the inner cytoplasmic membrane and into the periplasmic space. In vivo inactivation of the gene encoding PhoA leads to a loss of extracellular, phosphate-regulated phosphatase activity, but does not appear to affect the cells capacity for phosphate uptake. PhoA may play a role in scavenging phosphate during growth of Synechococcus sp. strain PCC 7942 in its natural environment. PhoA belongs to a domain family which includes the bacterial enzyme UshA and several other related enzymes including SoxB, CpdB, YhcR, and CD73. All members have a similar domain architecture which includes an N-terminal metallophosphatase domain and a C-terminal nucleotidase domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly relat
Probab=33.53 E-value=1.4e+02 Score=24.17 Aligned_cols=43 Identities=12% Similarity=0.216 Sum_probs=31.8
Q ss_pred HHHHHHHHHhcCCceEEEEEeChhHHHHHHHHHhCCCccEEEE
Q 022960 104 LRAIVQDFCAKGRVITAIIGHSKGGNAVLLYASKYNDISIVIN 146 (289)
Q Consensus 104 ~~~~i~~l~~~~~~~~~l~G~S~Gg~~a~~~a~~~p~v~~~v~ 146 (289)
+.+.++.|++++.+-|+++.|+-|-..-..+|.+.|.|+.++.
T Consensus 196 ~~~~v~~Lr~~gvD~II~LsH~g~~~~d~~lA~~v~gIDvIig 238 (313)
T cd08162 196 IQPSIDALTAQGINKIILLSHLQQISIEQALAALLSGVDVIIA 238 (313)
T ss_pred HHHHHHHHHHCCCCEEEEEecccccchHHHHHhcCCCCCEEEe
Confidence 6677888887778889999998443445666777777877763
No 450
>PRK10964 ADP-heptose:LPS heptosyl transferase I; Provisional
Probab=33.34 E-value=99 Score=24.89 Aligned_cols=36 Identities=11% Similarity=0.120 Sum_probs=24.5
Q ss_pred CCcEEEEEcCCCCCCCCc---chHHHHHHHHHcCccEEE
Q 022960 44 SKQLVIVCHGFQSTKDRI---PMVNLAAALEREGISAFR 79 (289)
Q Consensus 44 ~~~~iv~~hG~~~~~~~~---~~~~~~~~l~~~G~~v~~ 79 (289)
.++.|+++||.......| .|..+++.|.+.|+.++.
T Consensus 177 ~~~~i~~~~~~s~~~k~Wp~e~~a~li~~l~~~~~~ivl 215 (322)
T PRK10964 177 AGPYLVFLHATTRDDKHWPEAHWRELIGLLAPSGLRIKL 215 (322)
T ss_pred CCCeEEEEeCCCcccccCCHHHHHHHHHHHHHCCCeEEE
Confidence 456677888876543333 367788888877888764
No 451
>KOG4022 consensus Dihydropteridine reductase DHPR/QDPR [Amino acid transport and metabolism]
Probab=33.22 E-value=1.9e+02 Score=20.87 Aligned_cols=25 Identities=12% Similarity=0.158 Sum_probs=19.7
Q ss_pred HHHHHHHHHcCccEEEEccccCCCC
Q 022960 64 VNLAAALEREGISAFRFDFSGNGES 88 (289)
Q Consensus 64 ~~~~~~l~~~G~~v~~~d~~G~G~s 88 (289)
....+.|..++|-|..+|+--..+.
T Consensus 17 Sacv~~FkannywV~siDl~eNe~A 41 (236)
T KOG4022|consen 17 SACVEFFKANNYWVLSIDLSENEQA 41 (236)
T ss_pred HHHHHHHHhcCeEEEEEeecccccc
Confidence 5577888889999999999754443
No 452
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=33.01 E-value=2.4e+02 Score=22.09 Aligned_cols=61 Identities=13% Similarity=0.146 Sum_probs=40.5
Q ss_pred hHHHHHHHHHcCcc-EEEEccccCCCCCCCccccchHHHHHHHHHHHHHHHhcCCceEEEEEeChhHHHHHHHHHhCCC
Q 022960 63 MVNLAAALEREGIS-AFRFDFSGNGESEGSFLYGNYRREAEDLRAIVQDFCAKGRVITAIIGHSKGGNAVLLYASKYND 140 (289)
Q Consensus 63 ~~~~~~~l~~~G~~-v~~~d~~G~G~s~~~~~~~~~~~~~~d~~~~i~~l~~~~~~~~~l~G~S~Gg~~a~~~a~~~p~ 140 (289)
...+.+.+.+.|.. ++.+|+| .++...+++.+++.+...+.++.-+.----.-.++...+.
T Consensus 106 ~e~f~~~~~~aGvdGviipDLp-----------------~ee~~~~~~~~~~~gl~~I~lvap~t~~eri~~i~~~s~g 167 (258)
T PRK13111 106 VERFAADAAEAGVDGLIIPDLP-----------------PEEAEELRAAAKKHGLDLIFLVAPTTTDERLKKIASHASG 167 (258)
T ss_pred HHHHHHHHHHcCCcEEEECCCC-----------------HHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHhCCC
Confidence 56788888888876 7778887 2344555555556688888878777654444444555454
No 453
>COG1225 Bcp Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=32.91 E-value=1.8e+02 Score=20.71 Aligned_cols=60 Identities=17% Similarity=0.230 Sum_probs=38.1
Q ss_pred cceeeEEeeCCCCceEEEEEeecCCCcEEEEEcCCCCCCC----CcchHHHHHHHHHcCccEEEEc
Q 022960 20 VQRRRVVIPNSHGEKLVGILHETGSKQLVIVCHGFQSTKD----RIPMVNLAAALEREGISAFRFD 81 (289)
Q Consensus 20 ~~~~~~~~~~~~g~~l~~~~~~~~~~~~iv~~hG~~~~~~----~~~~~~~~~~l~~~G~~v~~~d 81 (289)
...-+++.+..+|..+. +..-..+++||+......+.. ..-++...+.+.+.|..|+.+.
T Consensus 8 ~~aPdF~Lp~~~g~~v~--Lsd~~Gk~VVLyFYPk~~TpgCT~Ea~~Frd~~~ef~~~~a~V~GIS 71 (157)
T COG1225 8 DKAPDFELPDQDGETVS--LSDLRGKPVVLYFYPKDFTPGCTTEACDFRDLLEEFEKLGAVVLGIS 71 (157)
T ss_pred CcCCCeEeecCCCCEEe--hHHhcCCcEEEEECCCCCCCcchHHHHHHHHHHHHHHhCCCEEEEEe
Confidence 34447788888887754 333233477777666544432 1236667778888899998774
No 454
>PRK07952 DNA replication protein DnaC; Validated
Probab=32.80 E-value=44 Score=25.80 Aligned_cols=36 Identities=14% Similarity=0.105 Sum_probs=27.9
Q ss_pred EEEEEcCCCCCCCCcchHHHHHHHHHcCccEEEEcc
Q 022960 47 LVIVCHGFQSTKDRIPMVNLAAALEREGISAFRFDF 82 (289)
Q Consensus 47 ~iv~~hG~~~~~~~~~~~~~~~~l~~~G~~v~~~d~ 82 (289)
.-++++|-+|++.+.....++..|...|..|+.++.
T Consensus 100 ~~~~l~G~~GtGKThLa~aia~~l~~~g~~v~~it~ 135 (244)
T PRK07952 100 ASFIFSGKPGTGKNHLAAAICNELLLRGKSVLIITV 135 (244)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEH
Confidence 357888888887766677788888888888887753
No 455
>TIGR03249 KdgD 5-dehydro-4-deoxyglucarate dehydratase. 5-dehydro-4-deoxyglucarate dehydratase not only catalyzes the dehydration of the substrate (diol to ketone + water), but causes the decarboxylation of the intermediate product to yield 2-oxoglutarate semialdehyde (2,5-dioxopentanoate). The gene for the enzyme is usually observed in the vicinity of transporters and dehydratases handling D-galactarate and D-gluconate as well as aldehyde dehydrogenases which convert the product to alpha-ketoglutarate.
Probab=32.66 E-value=2.6e+02 Score=22.34 Aligned_cols=82 Identities=10% Similarity=-0.019 Sum_probs=46.8
Q ss_pred hHHHHHHHHHcCccEEEEccccCCCCCCCccccchHHHHHHHHHHHHHHHhcCCceEEEEEeChhHHHHHHHHHhCCC--
Q 022960 63 MVNLAAALEREGISAFRFDFSGNGESEGSFLYGNYRREAEDLRAIVQDFCAKGRVITAIIGHSKGGNAVLLYASKYND-- 140 (289)
Q Consensus 63 ~~~~~~~l~~~G~~v~~~d~~G~G~s~~~~~~~~~~~~~~d~~~~i~~l~~~~~~~~~l~G~S~Gg~~a~~~a~~~p~-- 140 (289)
++.+.+.+.+.|.+-+.+- .|.+.....+.++..+-+..+++.. +.+-.+++|-+..-.-+..++....+
T Consensus 28 l~~li~~l~~~Gv~gi~v~-----GstGE~~~Lt~eEr~~v~~~~~~~~---~g~~pvi~gv~~~t~~ai~~a~~a~~~G 99 (296)
T TIGR03249 28 YRENIEWLLGYGLEALFAA-----GGTGEFFSLTPAEYEQVVEIAVSTA---KGKVPVYTGVGGNTSDAIEIARLAEKAG 99 (296)
T ss_pred HHHHHHHHHhcCCCEEEEC-----CCCcCcccCCHHHHHHHHHHHHHHh---CCCCcEEEecCccHHHHHHHHHHHHHhC
Confidence 6778888888888876642 2333443445454444445555554 22223556655334445555555444
Q ss_pred ccEEEEeccCCc
Q 022960 141 ISIVINISGRFN 152 (289)
Q Consensus 141 v~~~v~~~~~~~ 152 (289)
+++++++.|.+.
T Consensus 100 adav~~~pP~y~ 111 (296)
T TIGR03249 100 ADGYLLLPPYLI 111 (296)
T ss_pred CCEEEECCCCCC
Confidence 888888777654
No 456
>PF05577 Peptidase_S28: Serine carboxypeptidase S28; InterPro: IPR008758 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S28 (clan SC). The predicted active site residues for members of this family and family S10 occur in the same order in the sequence: S, D, H. These serine proteases include several eukaryotic enzymes such as lysosomal Pro-X carboxypeptidase, dipeptidyl-peptidase II, and thymus-specific serine peptidase [, , , ].; GO: 0008236 serine-type peptidase activity, 0006508 proteolysis; PDB: 3N2Z_B 3JYH_A 3N0T_C.
Probab=32.66 E-value=52 Score=27.89 Aligned_cols=39 Identities=15% Similarity=0.064 Sum_probs=22.9
Q ss_pred CceEEEEEeCCCCccChhhHHHHHhhCCCcEEEEEcCCCccc
Q 022960 211 DCRVLTIHGTKDKMVPAEDALEFDKFIPNHKLHIIEGADHEF 252 (289)
Q Consensus 211 ~~P~l~i~g~~D~~~~~~~~~~~~~~~~~~~~~~~~~~gH~~ 252 (289)
...++++.|+.|++....... ..-.....++++|++|+.
T Consensus 376 ~tnviFtNG~~DPW~~lgv~~---~~~~~~~~~~I~g~~Hc~ 414 (434)
T PF05577_consen 376 ATNVIFTNGELDPWRALGVTS---DSSDSVPAIVIPGGAHCS 414 (434)
T ss_dssp --SEEEEEETT-CCGGGS--S----SSSSEEEEEETT--TTG
T ss_pred CCeEEeeCCCCCCcccccCCC---CCCCCcccEEECCCeeec
Confidence 357999999999987655222 122345667899999984
No 457
>TIGR00365 monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.
Probab=32.61 E-value=1.4e+02 Score=19.09 Aligned_cols=81 Identities=10% Similarity=0.112 Sum_probs=46.7
Q ss_pred CCcEEEEEcCCCCCCCCcchHHHHHHHHHcCccEEEEccccCCCCCCCccccchHHHHHHHHHHHHHHHhc-CCceEEEE
Q 022960 44 SKQLVIVCHGFQSTKDRIPMVNLAAALEREGISAFRFDFSGNGESEGSFLYGNYRREAEDLRAIVQDFCAK-GRVITAII 122 (289)
Q Consensus 44 ~~~~iv~~hG~~~~~~~~~~~~~~~~l~~~G~~v~~~d~~G~G~s~~~~~~~~~~~~~~d~~~~i~~l~~~-~~~~~~l~ 122 (289)
+.+++||..|........+-....+.|.+.|.....+|..- + . ++...+..+... ....+.+=
T Consensus 11 ~~~Vvvf~kg~~~~~~Cp~C~~ak~lL~~~~i~~~~~di~~-----------~-~----~~~~~l~~~tg~~tvP~vfi~ 74 (97)
T TIGR00365 11 ENPVVLYMKGTPQFPQCGFSARAVQILKACGVPFAYVNVLE-----------D-P----EIRQGIKEYSNWPTIPQLYVK 74 (97)
T ss_pred cCCEEEEEccCCCCCCCchHHHHHHHHHHcCCCEEEEECCC-----------C-H----HHHHHHHHHhCCCCCCEEEEC
Confidence 56888998887433322234556677777787777676630 0 1 122223322222 34466777
Q ss_pred EeChhHHHHHHHHHhCCC
Q 022960 123 GHSKGGNAVLLYASKYND 140 (289)
Q Consensus 123 G~S~Gg~~a~~~a~~~p~ 140 (289)
|...||.--+..+....+
T Consensus 75 g~~iGG~ddl~~l~~~g~ 92 (97)
T TIGR00365 75 GEFVGGCDIIMEMYQSGE 92 (97)
T ss_pred CEEEeChHHHHHHHHCcC
Confidence 788999887776555443
No 458
>PTZ00062 glutaredoxin; Provisional
Probab=32.54 E-value=2.2e+02 Score=21.41 Aligned_cols=83 Identities=12% Similarity=0.150 Sum_probs=49.0
Q ss_pred CCcEEEEEcCCCCCCCCcchHHHHHHHHHcCccEEEEccccCCCCCCCccccchHHHHHHHHHHHHHHHhc-CCceEEEE
Q 022960 44 SKQLVIVCHGFQSTKDRIPMVNLAAALEREGISAFRFDFSGNGESEGSFLYGNYRREAEDLRAIVQDFCAK-GRVITAII 122 (289)
Q Consensus 44 ~~~~iv~~hG~~~~~~~~~~~~~~~~l~~~G~~v~~~d~~G~G~s~~~~~~~~~~~~~~d~~~~i~~l~~~-~~~~~~l~ 122 (289)
+.|++||..|........+-....+.|.+.|.....+|..- + .++.+.+..+... ....+.+=
T Consensus 112 ~~~Vvvf~Kg~~~~p~C~~C~~~k~~L~~~~i~y~~~DI~~-----------d-----~~~~~~l~~~sg~~TvPqVfI~ 175 (204)
T PTZ00062 112 NHKILLFMKGSKTFPFCRFSNAVVNMLNSSGVKYETYNIFE-----------D-----PDLREELKVYSNWPTYPQLYVN 175 (204)
T ss_pred cCCEEEEEccCCCCCCChhHHHHHHHHHHcCCCEEEEEcCC-----------C-----HHHHHHHHHHhCCCCCCeEEEC
Confidence 56788898886654433334556677777777666666540 0 1233334333222 34567788
Q ss_pred EeChhHHHHHHHHHhCCCcc
Q 022960 123 GHSKGGNAVLLYASKYNDIS 142 (289)
Q Consensus 123 G~S~Gg~~a~~~a~~~p~v~ 142 (289)
|--.||.--+.-+....+++
T Consensus 176 G~~IGG~d~l~~l~~~G~L~ 195 (204)
T PTZ00062 176 GELIGGHDIIKELYESNSLR 195 (204)
T ss_pred CEEEcChHHHHHHHHcCChh
Confidence 88899987777655544433
No 459
>PF02606 LpxK: Tetraacyldisaccharide-1-P 4'-kinase; InterPro: IPR003758 Tetraacyldisaccharide 4'-kinase phosphorylates the 4'-position of a tetraacyldisaccharide 1-phosphate precursor (DS-1-P) of lipid A, but the enzyme has not yet been purified because of instability []. This enzyme is involved in the synthesis of lipid A portion of the bacterial lipopolysaccharide layer (LPS).; GO: 0005524 ATP binding, 0009029 tetraacyldisaccharide 4'-kinase activity, 0009245 lipid A biosynthetic process
Probab=32.50 E-value=70 Score=26.00 Aligned_cols=44 Identities=20% Similarity=0.199 Sum_probs=30.3
Q ss_pred EEEEEcC--CCCCCCCcchHHHHHHHHHcCccEEEEccccCCCCCCC
Q 022960 47 LVIVCHG--FQSTKDRIPMVNLAAALEREGISAFRFDFSGNGESEGS 91 (289)
Q Consensus 47 ~iv~~hG--~~~~~~~~~~~~~~~~l~~~G~~v~~~d~~G~G~s~~~ 91 (289)
+||.+-. .||++.+.+...+++.|.++|+++..+. ||||.....
T Consensus 36 pVIsVGNltvGGTGKTP~v~~L~~~L~~~G~~~~IlS-RGYg~~~~~ 81 (326)
T PF02606_consen 36 PVISVGNLTVGGTGKTPLVIWLARLLQARGYRPAILS-RGYGRKSKG 81 (326)
T ss_pred cEEEEcccccCCCCchHHHHHHHHHHHhcCCceEEEc-CCCCCCCCC
Confidence 4555543 3444444567789999999999977775 799876543
No 460
>PF14606 Lipase_GDSL_3: GDSL-like Lipase/Acylhydrolase family; PDB: 3SKV_B.
Probab=32.50 E-value=2e+02 Score=21.04 Aligned_cols=16 Identities=19% Similarity=0.162 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHHhc
Q 022960 99 REAEDLRAIVQDFCAK 114 (289)
Q Consensus 99 ~~~~d~~~~i~~l~~~ 114 (289)
...+-+..+++.+++.
T Consensus 75 ~~~~~~~~fv~~iR~~ 90 (178)
T PF14606_consen 75 EFRERLDGFVKTIREA 90 (178)
T ss_dssp THHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHh
Confidence 3344555555555444
No 461
>PLN00416 carbonate dehydratase
Probab=32.24 E-value=1.2e+02 Score=23.69 Aligned_cols=31 Identities=23% Similarity=0.171 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHhcCCceEEEEEeChhHHHHHHHH
Q 022960 102 EDLRAIVQDFCAKGRVITAIIGHSKGGNAVLLYA 135 (289)
Q Consensus 102 ~d~~~~i~~l~~~~~~~~~l~G~S~Gg~~a~~~a 135 (289)
.-+.-.+..| +.+.|+|+|||-=|.+...+.
T Consensus 128 asLEyAv~~L---~V~~IVV~GHs~CGaV~Aa~~ 158 (258)
T PLN00416 128 AAVEYAVVHL---KVENILVIGHSCCGGIKGLMS 158 (258)
T ss_pred hHHHHHHHHh---CCCEEEEecCCCchHHHHHHh
Confidence 3455555556 888999999998777755543
No 462
>COG1058 CinA Predicted nucleotide-utilizing enzyme related to molybdopterin-biosynthesis enzyme MoeA [General function prediction only]
Probab=32.13 E-value=1.5e+02 Score=23.14 Aligned_cols=60 Identities=15% Similarity=0.181 Sum_probs=38.0
Q ss_pred EEcCCCCCCCCcchHHHHHHHHHcCccEEEEccccCCCCCCCccccchHHHHHHHHHHHHHHHhcCCceEEEEEeChhH
Q 022960 50 VCHGFQSTKDRIPMVNLAAALEREGISAFRFDFSGNGESEGSFLYGNYRREAEDLRAIVQDFCAKGRVITAIIGHSKGG 128 (289)
Q Consensus 50 ~~hG~~~~~~~~~~~~~~~~l~~~G~~v~~~d~~G~G~s~~~~~~~~~~~~~~d~~~~i~~l~~~~~~~~~l~G~S~Gg 128 (289)
++||-..+.+ ...+++.|...|+.|.-.-.-| +..+++.+.++.+.++ . .++++.-.+|-
T Consensus 13 lL~G~ivdtN---a~~la~~L~~~G~~v~~~~~Vg--------------D~~~~I~~~l~~a~~r-~-D~vI~tGGLGP 72 (255)
T COG1058 13 LLSGRIVDTN---AAFLADELTELGVDLARITTVG--------------DNPDRIVEALREASER-A-DVVITTGGLGP 72 (255)
T ss_pred eecCceecch---HHHHHHHHHhcCceEEEEEecC--------------CCHHHHHHHHHHHHhC-C-CEEEECCCcCC
Confidence 4567666654 4679999999999987665432 2245666667666555 3 35665544553
No 463
>PRK10824 glutaredoxin-4; Provisional
Probab=32.09 E-value=1.6e+02 Score=19.70 Aligned_cols=81 Identities=15% Similarity=0.104 Sum_probs=48.2
Q ss_pred CCcEEEEEcCCCCCCCCcchHHHHHHHHHcCccEEEEccccCCCCCCCccccchHHHHHHHHHHHHHHHhc-CCceEEEE
Q 022960 44 SKQLVIVCHGFQSTKDRIPMVNLAAALEREGISAFRFDFSGNGESEGSFLYGNYRREAEDLRAIVQDFCAK-GRVITAII 122 (289)
Q Consensus 44 ~~~~iv~~hG~~~~~~~~~~~~~~~~l~~~G~~v~~~d~~G~G~s~~~~~~~~~~~~~~d~~~~i~~l~~~-~~~~~~l~ 122 (289)
+.+++||..|........+-....+.|.+.|.....+|.-. + .++...+..+... -..+|++=
T Consensus 14 ~~~Vvvf~Kg~~~~p~Cpyc~~ak~lL~~~~i~~~~idi~~-----------d-----~~~~~~l~~~sg~~TVPQIFI~ 77 (115)
T PRK10824 14 ENPILLYMKGSPKLPSCGFSAQAVQALSACGERFAYVDILQ-----------N-----PDIRAELPKYANWPTFPQLWVD 77 (115)
T ss_pred cCCEEEEECCCCCCCCCchHHHHHHHHHHcCCCceEEEecC-----------C-----HHHHHHHHHHhCCCCCCeEEEC
Confidence 57889999986544433334555566666675544455421 1 1233334433222 45678999
Q ss_pred EeChhHHHHHHHHHhCCC
Q 022960 123 GHSKGGNAVLLYASKYND 140 (289)
Q Consensus 123 G~S~Gg~~a~~~a~~~p~ 140 (289)
|...||.--+..+....+
T Consensus 78 G~~IGG~ddl~~l~~~G~ 95 (115)
T PRK10824 78 GELVGGCDIVIEMYQRGE 95 (115)
T ss_pred CEEEcChHHHHHHHHCCC
Confidence 999999987776655443
No 464
>cd07217 Pat17_PNPLA8_PNPLA9_like4 Patatin-like phospholipase. Patatin is a storage protein of the potato tuber that shows Phospholipase A2 activity (PLA2; EC 3.1.1.4). Patatin catalyzes the nonspecific hydrolysis of phospholipids, glycolipids, sulfolipids, and mono- and diacylglycerols, thereby showing lipid acyl hydrolase activity. The active site includes an oxyanion hole with a conserved GGxR motif; it is found in almost all the members of this family. The catalytic dyad is formed by a serine and an aspartate. Patatin belongs to the alpha-beta hydrolase family which is identified by a characteristic nucleophile elbow with a consensus sequence of Sm-X-Nu-Sm (Sm = small residue, X = any residue and Nu = nucleophile). Members of this family have been found also in vertebrates. This family includes subfamily of PNPLA8 (iPLA2-gamma) and PNPLA9 (iPLA2-beta) like phospholipases from human as well as the Pat17 isozyme from Solanum cardiophyllum.
Probab=32.09 E-value=44 Score=27.36 Aligned_cols=18 Identities=22% Similarity=0.080 Sum_probs=16.2
Q ss_pred EEEEeChhHHHHHHHHHh
Q 022960 120 AIIGHSKGGNAVLLYASK 137 (289)
Q Consensus 120 ~l~G~S~Gg~~a~~~a~~ 137 (289)
.+.|.|.||.+|+.++..
T Consensus 44 lIaGTStGgIIAa~la~g 61 (344)
T cd07217 44 FVGGTSTGSIIAACIALG 61 (344)
T ss_pred EEEEecHHHHHHHHHHcC
Confidence 899999999999998863
No 465
>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily. It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.
Probab=32.01 E-value=95 Score=21.30 Aligned_cols=38 Identities=24% Similarity=0.183 Sum_probs=27.2
Q ss_pred EEEEcCCCCCCCCcchHHHHHHHHHcCccEEEEccccC
Q 022960 48 VIVCHGFQSTKDRIPMVNLAAALEREGISAFRFDFSGN 85 (289)
Q Consensus 48 iv~~hG~~~~~~~~~~~~~~~~l~~~G~~v~~~d~~G~ 85 (289)
|.+..+-++.+.+..-..++..++++|.+|+.+|.-..
T Consensus 2 i~~~~~kgg~gkt~~~~~~a~~~~~~~~~~~~vd~D~~ 39 (139)
T cd02038 2 IAVTSGKGGVGKTNISANLALALAKLGKRVLLLDADLG 39 (139)
T ss_pred EEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEECCCC
Confidence 45566666666544566788888989999999987643
No 466
>PRK04148 hypothetical protein; Provisional
Probab=31.93 E-value=1.7e+02 Score=20.16 Aligned_cols=24 Identities=4% Similarity=-0.274 Sum_probs=18.8
Q ss_pred CCceEEEEEeChhHHHHHHHHHhC
Q 022960 115 GRVITAIIGHSKGGNAVLLYASKY 138 (289)
Q Consensus 115 ~~~~~~l~G~S~Gg~~a~~~a~~~ 138 (289)
...++..+|-..|..+|..++...
T Consensus 16 ~~~kileIG~GfG~~vA~~L~~~G 39 (134)
T PRK04148 16 KNKKIVELGIGFYFKVAKKLKESG 39 (134)
T ss_pred cCCEEEEEEecCCHHHHHHHHHCC
Confidence 345799999999888888877543
No 467
>PRK05541 adenylylsulfate kinase; Provisional
Probab=31.92 E-value=68 Score=23.02 Aligned_cols=38 Identities=16% Similarity=0.122 Sum_probs=26.2
Q ss_pred CCcEEEEEcCCCCCCCCcchHHHHHHHHHcCccEEEEc
Q 022960 44 SKQLVIVCHGFQSTKDRIPMVNLAAALEREGISAFRFD 81 (289)
Q Consensus 44 ~~~~iv~~hG~~~~~~~~~~~~~~~~l~~~G~~v~~~d 81 (289)
..+.+|++-|..|++.+..-..+...|...+..++.+|
T Consensus 5 ~~~~~I~i~G~~GsGKst~a~~l~~~l~~~~~~~~~~~ 42 (176)
T PRK05541 5 PNGYVIWITGLAGSGKTTIAKALYERLKLKYSNVIYLD 42 (176)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEe
Confidence 45678888999888865445556677766555666664
No 468
>cd00952 CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate hydratase-aldolase (HBPHA) and trans-2'-carboxybenzalpyruvate hydratase-aldolase (CBPHA). HBPHA catalyzes HBP to salicyaldehyde and pyruvate. This reaction is part of the degradative pathways for naphthalene and naphthalenesulfonates by bacteria. CBPHA is homologous to HBPHA and catalyzes the cleavage of CBP to 2-carboxylbenzaldehyde and pyruvate during the degradation of phenanthrene. They are member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=31.71 E-value=2.8e+02 Score=22.40 Aligned_cols=82 Identities=9% Similarity=0.058 Sum_probs=51.0
Q ss_pred hHHHHHHHHHcCccEEEEccccCCCCCCCccccchHHHHHHHHHHHHHHHhcCCceEEEEEeC-hhHHHHHHHHHhCCC-
Q 022960 63 MVNLAAALEREGISAFRFDFSGNGESEGSFLYGNYRREAEDLRAIVQDFCAKGRVITAIIGHS-KGGNAVLLYASKYND- 140 (289)
Q Consensus 63 ~~~~~~~l~~~G~~v~~~d~~G~G~s~~~~~~~~~~~~~~d~~~~i~~l~~~~~~~~~l~G~S-~Gg~~a~~~a~~~p~- 140 (289)
+..+.+.+.+.|.+-+.+. .|.+.....+.++..+-+..+++.. +.+-.+++|.+ .+-.-+..++....+
T Consensus 31 l~~lv~~li~~Gv~Gi~v~-----GstGE~~~Lt~eEr~~v~~~~~~~~---~grvpvi~Gv~~~~t~~ai~~a~~A~~~ 102 (309)
T cd00952 31 TARLVERLIAAGVDGILTM-----GTFGECATLTWEEKQAFVATVVETV---AGRVPVFVGATTLNTRDTIARTRALLDL 102 (309)
T ss_pred HHHHHHHHHHcCCCEEEEC-----cccccchhCCHHHHHHHHHHHHHHh---CCCCCEEEEeccCCHHHHHHHHHHHHHh
Confidence 6677888888888766653 2333444445455555555566655 32223666765 566677777766555
Q ss_pred -ccEEEEeccCCc
Q 022960 141 -ISIVINISGRFN 152 (289)
Q Consensus 141 -v~~~v~~~~~~~ 152 (289)
+++++++.|.+.
T Consensus 103 Gad~vlv~~P~y~ 115 (309)
T cd00952 103 GADGTMLGRPMWL 115 (309)
T ss_pred CCCEEEECCCcCC
Confidence 889998887543
No 469
>PLN02251 pyrophosphate-dependent phosphofructokinase
Probab=31.59 E-value=2.9e+02 Score=24.63 Aligned_cols=91 Identities=7% Similarity=0.005 Sum_probs=49.2
Q ss_pred EEEEEcCCCCCCCCcchHHHHHHHHHcCccEEEEccccCCCCCC--Cc--cccchHHHHHHHHHHHHHHHhc--CCceE-
Q 022960 47 LVIVCHGFQSTKDRIPMVNLAAALEREGISAFRFDFSGNGESEG--SF--LYGNYRREAEDLRAIVQDFCAK--GRVIT- 119 (289)
Q Consensus 47 ~iv~~hG~~~~~~~~~~~~~~~~l~~~G~~v~~~d~~G~G~s~~--~~--~~~~~~~~~~d~~~~i~~l~~~--~~~~~- 119 (289)
.+|++-|-+.... -..+++++.+.|+.+-++-.|..=..+- .. ....|+..++-+.+++..+... ...+.
T Consensus 193 ~LViIGGddS~~~---A~~Lae~~~~~g~~i~VIGVPKTIDNDL~~td~e~s~GFdTA~k~~a~~I~ni~~da~S~~k~~ 269 (568)
T PLN02251 193 GLVVIGGDDSNTN---ACLLAEYFRAKNLKTRVIGCPKTIDGDLKSKEVPTSFGFDTACKIYSEMIGNVMIDARSTGKYY 269 (568)
T ss_pred EEEEeCCchHHHH---HHHHHHHHHhcCCCeeEEEeCceEeCCCCCCcCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCEE
Confidence 5666655554432 4667788887886555554443322221 11 2346677777777777776544 22222
Q ss_pred ---EEEEeChhHHHHHHHHHhCCC
Q 022960 120 ---AIIGHSKGGNAVLLYASKYND 140 (289)
Q Consensus 120 ---~l~G~S~Gg~~a~~~a~~~p~ 140 (289)
=++|-+.|=..+...++..|+
T Consensus 270 ~~VevMGR~aG~LAL~~aLat~pn 293 (568)
T PLN02251 270 HFVRLMGRAASHITLECALQTHPN 293 (568)
T ss_pred EEEEeCCCchHHHHHHHHHhhCCC
Confidence 367777764443333344454
No 470
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=31.53 E-value=55 Score=22.83 Aligned_cols=34 Identities=21% Similarity=0.264 Sum_probs=23.6
Q ss_pred EEEEcCCCCCCCCcchHHHHHHHHHcCccEEEEc
Q 022960 48 VIVCHGFQSTKDRIPMVNLAAALEREGISAFRFD 81 (289)
Q Consensus 48 iv~~hG~~~~~~~~~~~~~~~~l~~~G~~v~~~d 81 (289)
+|++-|..+++.+..-+.+...+...|+.++.+|
T Consensus 1 ~i~i~G~~GsGKSTla~~L~~~l~~~g~~~~~i~ 34 (149)
T cd02027 1 VIWLTGLSGSGKSTIARALEEKLFQRGRPVYVLD 34 (149)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEEc
Confidence 4667788888765455666667766677777775
No 471
>TIGR02193 heptsyl_trn_I lipopolysaccharide heptosyltransferase I. This family consists of examples of ADP-heptose:LPS heptosyltransferase I, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=31.44 E-value=1.1e+02 Score=24.60 Aligned_cols=37 Identities=14% Similarity=0.111 Sum_probs=25.8
Q ss_pred CCcEEEEEcCCCCCCCCc---chHHHHHHHHHcCccEEEE
Q 022960 44 SKQLVIVCHGFQSTKDRI---PMVNLAAALEREGISAFRF 80 (289)
Q Consensus 44 ~~~~iv~~hG~~~~~~~~---~~~~~~~~l~~~G~~v~~~ 80 (289)
+++.|++.||.......| .|..+++.|.++|+.++.+
T Consensus 178 ~~~~i~i~~gas~~~K~wp~e~~~~l~~~l~~~~~~~vl~ 217 (319)
T TIGR02193 178 PAPYAVLLHATSRDDKTWPEERWRELARLLLARGLQIVLP 217 (319)
T ss_pred CCCEEEEEeCCCcccCCCCHHHHHHHHHHHHHCCCeEEEe
Confidence 467888888876554444 4667888887778877654
No 472
>TIGR00824 EIIA-man PTS system, mannose/fructose/sorbose family, IIA component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Man family is unique in several respects among PTS permease families It is the only PTS family in which members possess a IID protein. It is the only PTS family in which the IIB constituent is phosphorylated on a histidyl rather than a cysteyl residue. Its permease members exhibit broad specificity for a range of sugars, rather than being specific for just one or a few sugars. The mannose permease of E. coli, for example, can transport and phosphorylate glucose, mannose, fructose, glucosamine, N-acetylglucosamine, and other sugars. Other members of this can transport sorbose, fructose and N-acetylglucosamine. This family is specific for the IIA components.
Probab=31.34 E-value=1.6e+02 Score=19.55 Aligned_cols=82 Identities=15% Similarity=0.082 Sum_probs=48.2
Q ss_pred cEEEEEcCCCCCCCCcchHHHHHHHHHcCccEEEEccccCCCCCCCccccchHHHHHHHHHHHHHHHhcCCceEEEEEeC
Q 022960 46 QLVIVCHGFQSTKDRIPMVNLAAALEREGISAFRFDFSGNGESEGSFLYGNYRREAEDLRAIVQDFCAKGRVITAIIGHS 125 (289)
Q Consensus 46 ~~iv~~hG~~~~~~~~~~~~~~~~l~~~G~~v~~~d~~G~G~s~~~~~~~~~~~~~~d~~~~i~~l~~~~~~~~~l~G~S 125 (289)
..||.-||..+.. ...-++.+....-+|.++++. ...+.++..+.+.++++.+. ..+.++++--=
T Consensus 3 ~ili~sHG~~A~g----l~~s~~~i~G~~~~i~~i~~~---------~~~~~~~~~~~l~~~i~~~~--~~~~vivltDl 67 (116)
T TIGR00824 3 AIIISGHGQAAIA----LLKSAEMIFGEQNNVGAVPFV---------PGENAETLQEKYNAALADLD--TEEEVLFLVDI 67 (116)
T ss_pred EEEEEecHHHHHH----HHHHHHHHcCCcCCeEEEEcC---------CCcCHHHHHHHHHHHHHhcC--CCCCEEEEEeC
Confidence 3678888876554 455555555333457777764 12234555666777776652 23468888888
Q ss_pred hhHHHHHH---HHHhCCCcc
Q 022960 126 KGGNAVLL---YASKYNDIS 142 (289)
Q Consensus 126 ~Gg~~a~~---~a~~~p~v~ 142 (289)
+||...-. +..+++++.
T Consensus 68 ~GGSp~n~a~~~~~~~~~~~ 87 (116)
T TIGR00824 68 FGGSPYNAAARIIVDKPHMD 87 (116)
T ss_pred CCCCHHHHHHHHHhhcCCEE
Confidence 88866443 333445554
No 473
>TIGR03029 EpsG chain length determinant protein tyrosine kinase EpsG. The proteins in this family are homologs of the EpsG protein found in Methylobacillus strain 12S and are generally found in operons with other Eps homologs. The protein is believed to function as the protein tyrosine kinase component of the chain length regulator (along with the transmembrane component EpsF).
Probab=31.31 E-value=91 Score=24.38 Aligned_cols=40 Identities=15% Similarity=0.135 Sum_probs=30.0
Q ss_pred CCcEEEEEcCCCCCCCCcchHHHHHHHHHcCccEEEEccc
Q 022960 44 SKQLVIVCHGFQSTKDRIPMVNLAAALEREGISAFRFDFS 83 (289)
Q Consensus 44 ~~~~iv~~hG~~~~~~~~~~~~~~~~l~~~G~~v~~~d~~ 83 (289)
....|.+.-+-++.+.+..-..++..|++.|.+|+.+|.-
T Consensus 102 ~~~vi~vts~~~g~Gktt~a~nLA~~la~~g~~VllID~D 141 (274)
T TIGR03029 102 GRKALAVVSAKSGEGCSYIAANLAIVFSQLGEKTLLIDAN 141 (274)
T ss_pred CCeEEEEECCCCCCCHHHHHHHHHHHHHhcCCeEEEEeCC
Confidence 4456777777666665545677889999999999999873
No 474
>cd01523 RHOD_Lact_B Member of the Rhodanese Homology Domain superfamily. This CD includes predicted proteins with rhodanese-like domains found N-terminal of the metallo-beta-lactamase domain.
Probab=31.25 E-value=1.1e+02 Score=19.36 Aligned_cols=29 Identities=17% Similarity=0.312 Sum_probs=18.7
Q ss_pred CCCcEEEEEcCCCCCCCCcchHHHHHHHHHcCccE
Q 022960 43 GSKQLVIVCHGFQSTKDRIPMVNLAAALEREGISA 77 (289)
Q Consensus 43 ~~~~~iv~~hG~~~~~~~~~~~~~~~~l~~~G~~v 77 (289)
..++.||+|+.... -...+..|.+.||.+
T Consensus 60 ~~~~ivv~C~~G~r------s~~aa~~L~~~G~~~ 88 (100)
T cd01523 60 DDQEVTVICAKEGS------SQFVAELLAERGYDV 88 (100)
T ss_pred CCCeEEEEcCCCCc------HHHHHHHHHHcCcee
Confidence 35677777764322 245667888889983
No 475
>PF09419 PGP_phosphatase: Mitochondrial PGP phosphatase; InterPro: IPR010021 This group of hypothetical proteins is a part of the IIIA subfamily of the haloacid dehalogenase (HAD) superfamily of hydrolases. All characterised members of this subfamily and most characterised members of the HAD superfamily are phosphatases. HAD superfamily phosphatases contain active site residues in several conserved catalytic motifs [], all of which are found conserved here. This family consists of sequences from fungi, plants, cyanobacteria, Gram-positive bacteria and Deinococcus. There is presently no characterisation of any sequence in this family.
Probab=31.24 E-value=1.4e+02 Score=21.56 Aligned_cols=52 Identities=17% Similarity=0.198 Sum_probs=34.7
Q ss_pred HHHcCccEEEEccccCCCCCCCccccchHHHHHHHHHHHHHHHhcCC-ceEEEEEeChh
Q 022960 70 LEREGISAFRFDFSGNGESEGSFLYGNYRREAEDLRAIVQDFCAKGR-VITAIIGHSKG 127 (289)
Q Consensus 70 l~~~G~~v~~~d~~G~G~s~~~~~~~~~~~~~~d~~~~i~~l~~~~~-~~~~l~G~S~G 127 (289)
|.+.|+..+.+|.-..=..... .+...++.+.++.+++... +++.++--|.|
T Consensus 36 Lk~~Gik~li~DkDNTL~~~~~------~~i~~~~~~~~~~l~~~~~~~~v~IvSNsaG 88 (168)
T PF09419_consen 36 LKKKGIKALIFDKDNTLTPPYE------DEIPPEYAEWLNELKKQFGKDRVLIVSNSAG 88 (168)
T ss_pred hhhcCceEEEEcCCCCCCCCCc------CcCCHHHHHHHHHHHHHCCCCeEEEEECCCC
Confidence 7888999999998654222211 2223456666677766644 48999999986
No 476
>PLN02757 sirohydrochlorine ferrochelatase
Probab=31.19 E-value=98 Score=21.92 Aligned_cols=30 Identities=20% Similarity=0.358 Sum_probs=18.4
Q ss_pred CCcEEEEEcCCCCCCCCcchHHHHHHHHHc
Q 022960 44 SKQLVIVCHGFQSTKDRIPMVNLAAALERE 73 (289)
Q Consensus 44 ~~~~iv~~hG~~~~~~~~~~~~~~~~l~~~ 73 (289)
....||+-||.-.......+..+++.+.++
T Consensus 13 ~~~lllvgHGSrd~~a~~~~~~la~~l~~~ 42 (154)
T PLN02757 13 KDGVVIVDHGSRRKESNLMLEEFVAMYKQK 42 (154)
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHHHhh
Confidence 346778888877554223456667777543
No 477
>PF02590 SPOUT_MTase: Predicted SPOUT methyltransferase; InterPro: IPR003742 This family of proteins are predicted to be SPOUT methyltransferases []. ; GO: 0008168 methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1VH0_E 4FAK_A 1TO0_G 1O6D_A 1NS5_B.
Probab=31.06 E-value=1.1e+02 Score=21.73 Aligned_cols=45 Identities=20% Similarity=0.265 Sum_probs=24.4
Q ss_pred CccEEEEccccCCCCCCCccccchHHHHHHHHHHHHHHHhcCCce-EEEEEeChhHHH
Q 022960 74 GISAFRFDFSGNGESEGSFLYGNYRREAEDLRAIVQDFCAKGRVI-TAIIGHSKGGNA 130 (289)
Q Consensus 74 G~~v~~~d~~G~G~s~~~~~~~~~~~~~~d~~~~i~~l~~~~~~~-~~l~G~S~Gg~~ 130 (289)
+-.++++|-.|---+ ..++.+.++.....+..+ +++||-+.|=.-
T Consensus 67 ~~~~i~Ld~~Gk~~s------------S~~fA~~l~~~~~~g~~~i~F~IGG~~G~~~ 112 (155)
T PF02590_consen 67 NDYVILLDERGKQLS------------SEEFAKKLERWMNQGKSDIVFIIGGADGLSE 112 (155)
T ss_dssp TSEEEEE-TTSEE--------------HHHHHHHHHHHHHTTS-EEEEEE-BTTB--H
T ss_pred CCEEEEEcCCCccCC------------hHHHHHHHHHHHhcCCceEEEEEecCCCCCH
Confidence 567888888863222 245555555555555534 589999998433
No 478
>PHA02114 hypothetical protein
Probab=31.03 E-value=99 Score=19.77 Aligned_cols=34 Identities=12% Similarity=0.345 Sum_probs=24.8
Q ss_pred cEEEEEcCCCCCCCCcchHHHHHHHHHcCccEEEEc
Q 022960 46 QLVIVCHGFQSTKDRIPMVNLAAALEREGISAFRFD 81 (289)
Q Consensus 46 ~~iv~~hG~~~~~~~~~~~~~~~~l~~~G~~v~~~d 81 (289)
.+||+=--+..+.. .|-.++..|.+.||+|++-.
T Consensus 83 gtivldvn~amsr~--pwi~v~s~le~~g~~vvatq 116 (127)
T PHA02114 83 GTIVLDVNYAMSRA--PWIKVISRLEEAGFNVVATQ 116 (127)
T ss_pred CeEEEEehhhhccC--cHHHHHHHHHhcCceeeehh
Confidence 45666555555554 38899999999999998753
No 479
>PRK13869 plasmid-partitioning protein RepA; Provisional
Probab=31.01 E-value=80 Score=26.62 Aligned_cols=41 Identities=17% Similarity=0.193 Sum_probs=28.6
Q ss_pred cEEEEEcCCCCCCCCcchHHHHHHHHHcCccEEEEccccCC
Q 022960 46 QLVIVCHGFQSTKDRIPMVNLAAALEREGISAFRFDFSGNG 86 (289)
Q Consensus 46 ~~iv~~hG~~~~~~~~~~~~~~~~l~~~G~~v~~~d~~G~G 86 (289)
.+|.+...=||.+.+..-..++..|+..|++|+++|+--.|
T Consensus 122 ~vIav~n~KGGvGKTTta~nLA~~LA~~G~rVLlIDlDpQ~ 162 (405)
T PRK13869 122 QVIAVTNFKGGSGKTTTSAHLAQYLALQGYRVLAVDLDPQA 162 (405)
T ss_pred eEEEEEcCCCCCCHHHHHHHHHHHHHhcCCceEEEcCCCCC
Confidence 34555555555554334667888999999999999986554
No 480
>PHA02519 plasmid partition protein SopA; Reviewed
Probab=30.95 E-value=99 Score=25.88 Aligned_cols=42 Identities=14% Similarity=0.090 Sum_probs=28.8
Q ss_pred EEEEEcCCCCCCCCcchHHHHHHHHHcCccEEEEcc-ccCCCC
Q 022960 47 LVIVCHGFQSTKDRIPMVNLAAALEREGISAFRFDF-SGNGES 88 (289)
Q Consensus 47 ~iv~~hG~~~~~~~~~~~~~~~~l~~~G~~v~~~d~-~G~G~s 88 (289)
+|.+.-.=||.+.+..-..++..|+.+|++|+++|+ -..|..
T Consensus 108 vIav~n~KGGVGKTTta~nLA~~LA~~G~rVLlIDl~DpQ~nl 150 (387)
T PHA02519 108 VLAVMSHKGGVYKTSSAVHTAQWLALQGHRVLLIEGNDPQGTA 150 (387)
T ss_pred EEEEecCCCCCcHHHHHHHHHHHHHhCCCcEEEEeCCCCCCCc
Confidence 444555445554433466788899999999999996 665543
No 481
>PRK14331 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=30.92 E-value=3.4e+02 Score=23.21 Aligned_cols=93 Identities=11% Similarity=-0.039 Sum_probs=46.3
Q ss_pred EEEcCCCCCCCCcchHHHHHHHHHcCccEEEEccccCCCCCCC-ccccch-HHHHHHHHHHH---HHHHhcCCceEEEEE
Q 022960 49 IVCHGFQSTKDRIPMVNLAAALEREGISAFRFDFSGNGESEGS-FLYGNY-RREAEDLRAIV---QDFCAKGRVITAIIG 123 (289)
Q Consensus 49 v~~hG~~~~~~~~~~~~~~~~l~~~G~~v~~~d~~G~G~s~~~-~~~~~~-~~~~~d~~~~i---~~l~~~~~~~~~l~G 123 (289)
++++-+|+..+...-..+...|.+.||.+..- . ...+-- -...++ ......+...+ +.+++.+.+..+++|
T Consensus 3 ~~i~t~GC~~N~~ds~~~~~~l~~~G~~~~~~--~--~~aDviiiNTC~v~~~a~~k~~~~i~~~~~~k~~~p~~~ivv~ 78 (437)
T PRK14331 3 YYIKTFGCQMNFNDSEKIKGILQTLGYEPADD--W--EEADLILVNTCTIREKPDQKVLSHLGEYKKIKEKNPNALIGVC 78 (437)
T ss_pred EEEEecCCCCcHHHHHHHHHHHHHCcCEECCC--c--ccCCEEEEeCcceecHHHHHHHHHHHHHHHHHHhCCCCEEEEE
Confidence 56677777665434566888888888765531 0 001100 001111 12223444444 444444444455665
Q ss_pred eChhHHHHHHHHHhCCCccEEE
Q 022960 124 HSKGGNAVLLYASKYNDISIVI 145 (289)
Q Consensus 124 ~S~Gg~~a~~~a~~~p~v~~~v 145 (289)
-++-....-.++...|.|+.++
T Consensus 79 Gc~a~~~~e~~~~~~p~vD~vv 100 (437)
T PRK14331 79 GCLAQRAGYEIVQKAPFIDIVF 100 (437)
T ss_pred cchhcCChHHHHhcCCCCcEEE
Confidence 4554444444445566676665
No 482
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=30.83 E-value=76 Score=26.96 Aligned_cols=39 Identities=26% Similarity=0.262 Sum_probs=30.6
Q ss_pred CCcEEEEEcCCCCCCCCcchHHHHHHHHHcCccEEEEcc
Q 022960 44 SKQLVIVCHGFQSTKDRIPMVNLAAALEREGISAFRFDF 82 (289)
Q Consensus 44 ~~~~iv~~hG~~~~~~~~~~~~~~~~l~~~G~~v~~~d~ 82 (289)
.+|.+|++-|..|.+.+.....++..|.+.|+.|..++.
T Consensus 98 ~~~~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~ 136 (429)
T TIGR01425 98 GKQNVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCA 136 (429)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcC
Confidence 457899999998887654566788888888998888764
No 483
>TIGR03708 poly_P_AMP_trns polyphosphate:AMP phosphotransferase. Members of this protein family contain a domain duplication. The characterized member from Acinetobacter johnsonii is polyphosphate:AMP phosphotransferase (PAP), which can transfer the terminal phosphate from poly(P) to AMP, yielding ADP. In the opposite direction, this enzyme can synthesize poly(P). Each domain of this protein family is homologous to polyphosphate kinase, an enzyme that can run in the forward direction to extend a polyphosphate chain with a new terminal phosphate from ATP, or in reverse to make ATP (or GTP) from ADP (or GDP).
Probab=30.72 E-value=47 Score=28.70 Aligned_cols=41 Identities=15% Similarity=0.250 Sum_probs=34.6
Q ss_pred CCCcEEEEEcCCCCCCCCcchHHHHHHHHHcCccEEEEccc
Q 022960 43 GSKQLVIVCHGFQSTKDRIPMVNLAAALEREGISAFRFDFS 83 (289)
Q Consensus 43 ~~~~~iv~~hG~~~~~~~~~~~~~~~~l~~~G~~v~~~d~~ 83 (289)
...|+||++-|+.+.+.......+...|..+||.|+.+--|
T Consensus 296 ~~~~vlivfeG~DaAGKgg~I~rl~~~ldPrg~~v~~~~~P 336 (493)
T TIGR03708 296 RKRSLVLVFEGWDAAGKGGAIRRVTEALDARQYRVVPIAAP 336 (493)
T ss_pred CCCCEEEEEEcccCCCCcHHHHHHHhhcCCCeeEEEeCCCc
Confidence 46789999999988776556788888888899999998766
No 484
>PRK13705 plasmid-partitioning protein SopA; Provisional
Probab=30.71 E-value=85 Score=26.27 Aligned_cols=43 Identities=16% Similarity=0.146 Sum_probs=29.5
Q ss_pred cEEEEEcCCCCCCCCcchHHHHHHHHHcCccEEEEcc-ccCCCC
Q 022960 46 QLVIVCHGFQSTKDRIPMVNLAAALEREGISAFRFDF-SGNGES 88 (289)
Q Consensus 46 ~~iv~~hG~~~~~~~~~~~~~~~~l~~~G~~v~~~d~-~G~G~s 88 (289)
.+|.+...=||.+.+..-..++..|+..|++|+++|. -..|..
T Consensus 107 ~vIai~n~KGGVGKTT~a~nLA~~LA~~G~rVLlID~~DpQ~nl 150 (388)
T PRK13705 107 PVIGVAAHKGGVYKTSVSVHLAQDLALKGLRVLLVEGNDPQGTA 150 (388)
T ss_pred eEEEEECCCCCchHHHHHHHHHHHHHhcCCCeEEEcCCCCCCch
Confidence 3455555555555433456788899999999999995 655543
No 485
>cd01520 RHOD_YbbB Member of the Rhodanese Homology Domain superfamily. This CD includes several putative ATP /GTP binding proteins including E. coli YbbB.
Probab=30.68 E-value=1.2e+02 Score=20.40 Aligned_cols=34 Identities=26% Similarity=0.262 Sum_probs=19.0
Q ss_pred CCCcEEEEEcCCCCCCCCcchHHHHHHHHHcCccEEEEc
Q 022960 43 GSKQLVIVCHGFQSTKDRIPMVNLAAALEREGISAFRFD 81 (289)
Q Consensus 43 ~~~~~iv~~hG~~~~~~~~~~~~~~~~l~~~G~~v~~~d 81 (289)
.+.++||++...+..+ ......|...||.|..+|
T Consensus 85 ~~~~vvvyC~~~G~rs-----~~a~~~L~~~G~~v~~L~ 118 (128)
T cd01520 85 RDPKLLIYCARGGMRS-----QSLAWLLESLGIDVPLLE 118 (128)
T ss_pred CCCeEEEEeCCCCccH-----HHHHHHHHHcCCceeEeC
Confidence 3567888885222222 223355566699866554
No 486
>PLN03050 pyridoxine (pyridoxamine) 5'-phosphate oxidase; Provisional
Probab=30.39 E-value=1.1e+02 Score=23.69 Aligned_cols=34 Identities=15% Similarity=0.014 Sum_probs=25.7
Q ss_pred cEEEEEcCCCCCCCCcchHHHHHHHHHcCccEEEEc
Q 022960 46 QLVIVCHGFQSTKDRIPMVNLAAALEREGISAFRFD 81 (289)
Q Consensus 46 ~~iv~~hG~~~~~~~~~~~~~~~~l~~~G~~v~~~d 81 (289)
..|+++-|-|.+..+ ---.++.|.++||.|.++-
T Consensus 61 ~~V~VlcG~GNNGGD--Glv~AR~L~~~G~~V~v~~ 94 (246)
T PLN03050 61 PRVLLVCGPGNNGGD--GLVAARHLAHFGYEVTVCY 94 (246)
T ss_pred CeEEEEECCCCCchh--HHHHHHHHHHCCCeEEEEE
Confidence 457777788877765 4568899999999987765
No 487
>COG3933 Transcriptional antiterminator [Transcription]
Probab=30.29 E-value=3.3e+02 Score=23.35 Aligned_cols=74 Identities=14% Similarity=0.147 Sum_probs=46.9
Q ss_pred CCcEEEEEcCCCCCCCCcchHHHHHHHHHcCccEEEEccccCCCCCCCccccchHHHHHHHHHHHHHHHhcCCceEEEEE
Q 022960 44 SKQLVIVCHGFQSTKDRIPMVNLAAALEREGISAFRFDFSGNGESEGSFLYGNYRREAEDLRAIVQDFCAKGRVITAIIG 123 (289)
Q Consensus 44 ~~~~iv~~hG~~~~~~~~~~~~~~~~l~~~G~~v~~~d~~G~G~s~~~~~~~~~~~~~~d~~~~i~~l~~~~~~~~~l~G 123 (289)
.-.+||..||...-+. ....+..|... =-+.++|+| -..++.+.. ..+.+++++.+..+=.++=
T Consensus 108 ~v~vIiiAHG~sTASS---maevanrLL~~-~~~~aiDMP---------Ldvsp~~vl---e~l~e~~k~~~~~~GlllL 171 (470)
T COG3933 108 RVKVIIIAHGYSTASS---MAEVANRLLGE-EIFIAIDMP---------LDVSPSDVL---EKLKEYLKERDYRSGLLLL 171 (470)
T ss_pred ceeEEEEecCcchHHH---HHHHHHHHhhc-cceeeecCC---------CcCCHHHHH---HHHHHHHHhcCccCceEEE
Confidence 3458999999876542 56777787776 478899998 122333333 3344555555655545666
Q ss_pred eChhHHHHHH
Q 022960 124 HSKGGNAVLL 133 (289)
Q Consensus 124 ~S~Gg~~a~~ 133 (289)
..||......
T Consensus 172 VDMGSL~~f~ 181 (470)
T COG3933 172 VDMGSLTSFG 181 (470)
T ss_pred EecchHHHHH
Confidence 7888877654
No 488
>COG5441 Uncharacterized conserved protein [Function unknown]
Probab=30.26 E-value=2.9e+02 Score=22.23 Aligned_cols=93 Identities=18% Similarity=0.068 Sum_probs=58.3
Q ss_pred EEEEEcCCCCCCCCcchHHHHHHHHHcCccEEEEccccCCCCCCCc-------------------cccch-HHHHHHHHH
Q 022960 47 LVIVCHGFQSTKDRIPMVNLAAALEREGISAFRFDFSGNGESEGSF-------------------LYGNY-RREAEDLRA 106 (289)
Q Consensus 47 ~iv~~hG~~~~~~~~~~~~~~~~l~~~G~~v~~~d~~G~G~s~~~~-------------------~~~~~-~~~~~d~~~ 106 (289)
..|++-|.+.++.. ....+++.....|-.++.+|.---+...... ...+- ...+.-..+
T Consensus 3 krIyVvgT~DTKg~-EL~ylad~I~~aG~~~v~vDvs~~~~~~~~~dis~~~VA~~hp~~~qAv~~~~Drg~AiaaMa~A 81 (401)
T COG5441 3 KRIYVVGTADTKGE-ELAYLADLIEAAGGSPVLVDVSTLRNPTSEVDISAEDVAGAHPGGRQAVLDGNDRGSAIAAMAEA 81 (401)
T ss_pred ceEEEEecCCCcch-hHHHHHHHHHHcCCCeEEEEeeccCCCCCCcccCHHHHhhhCCCcceeEeccCchhHHHHHHHHH
Confidence 35667777777654 4677888888889999999875422211000 00000 112233345
Q ss_pred HHHHHHhc-CCceEEEEEeChhHHHHHHHHHhCCC
Q 022960 107 IVQDFCAK-GRVITAIIGHSKGGNAVLLYASKYND 140 (289)
Q Consensus 107 ~i~~l~~~-~~~~~~l~G~S~Gg~~a~~~a~~~p~ 140 (289)
+.+++..+ +..-++-+|-|.|..+++-.+...|-
T Consensus 82 ~~r~l~sR~dV~gmig~GGsgGT~lit~~m~~LPl 116 (401)
T COG5441 82 FVRFLSSRGDVAGMIGMGGSGGTALITPAMRRLPL 116 (401)
T ss_pred HHHHhhcccchhheeecCCCcchHhhhhHHHhcCc
Confidence 66666555 55567888899999998888888876
No 489
>PRK03482 phosphoglycerate mutase; Provisional
Probab=30.18 E-value=2.3e+02 Score=21.12 Aligned_cols=39 Identities=10% Similarity=0.111 Sum_probs=24.5
Q ss_pred cchHHHHHHHHHHHHHHHhc-CCceEEEEEeChhHHHHHHHH
Q 022960 95 GNYRREAEDLRAIVQDFCAK-GRVITAIIGHSKGGNAVLLYA 135 (289)
Q Consensus 95 ~~~~~~~~d~~~~i~~l~~~-~~~~~~l~G~S~Gg~~a~~~a 135 (289)
.++.+...-+..+++.+... ..+.+.+|+| |+.+...++
T Consensus 120 Es~~~~~~Rv~~~l~~~~~~~~~~~vliVsH--g~~i~~l~~ 159 (215)
T PRK03482 120 ESMQELSDRMHAALESCLELPQGSRPLLVSH--GIALGCLVS 159 (215)
T ss_pred ccHHHHHHHHHHHHHHHHHhCCCCeEEEEeC--cHHHHHHHH
Confidence 45566667777777766443 3356899999 455544433
No 490
>PF01872 RibD_C: RibD C-terminal domain; InterPro: IPR002734 This domain is found in the C terminus of the bifunctional deaminase-reductase of Escherichia coli, Bacillus subtilis and other bacteria in combination with IPR002125 from INTERPRO that catalyses the second and third steps in the biosynthesis of riboflavin, i.e., the deamination of 2,5-diamino-6-ribosylamino-4(3H)-pyrimidinone 5'-phosphate (deaminase) and the subsequent reduction of the ribosyl side chain (reductase) []. The domain is also present in some HTP reductases from archaea and fungi.; GO: 0008703 5-amino-6-(5-phosphoribosylamino)uracil reductase activity, 0009231 riboflavin biosynthetic process, 0055114 oxidation-reduction process; PDB: 3KY8_B 3KGY_B 2GD9_B 3JTW_B 2XW7_B 2D5N_B 2B3Z_A 3EX8_B 2AZN_A 2P4G_A ....
Probab=30.13 E-value=1.6e+02 Score=21.61 Aligned_cols=40 Identities=15% Similarity=0.135 Sum_probs=26.9
Q ss_pred HHHHHHHHHHhcCCceEEEEEeChhHHHHHHHHHhCCCccEEEE
Q 022960 103 DLRAIVQDFCAKGRVITAIIGHSKGGNAVLLYASKYNDISIVIN 146 (289)
Q Consensus 103 d~~~~i~~l~~~~~~~~~l~G~S~Gg~~a~~~a~~~p~v~~~v~ 146 (289)
|+.++++.|++.+..++.+.| ||.++..+.... -|+-+.+
T Consensus 122 dl~~~l~~L~~~g~~~i~v~G---G~~l~~~~l~~g-LvDEl~l 161 (200)
T PF01872_consen 122 DLEEALRRLKERGGKDILVEG---GGSLNGSFLRAG-LVDELSL 161 (200)
T ss_dssp HHHHHHHHHHHTTTSEEEEEE---HHHHHHHHHHTT---SEEEE
T ss_pred CHHHHHHHHHhcCCCEEEEec---hHHHHHHHHhCC-CCCEEEE
Confidence 677888888888888999987 676666655431 1554444
No 491
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=30.12 E-value=53 Score=24.84 Aligned_cols=16 Identities=19% Similarity=0.293 Sum_probs=13.3
Q ss_pred HHHHHcCccEEEEccc
Q 022960 68 AALEREGISAFRFDFS 83 (289)
Q Consensus 68 ~~l~~~G~~v~~~d~~ 83 (289)
..|+++|+.|+++|.-
T Consensus 53 ~~LA~~G~~V~avD~s 68 (218)
T PRK13255 53 LWLAEQGHEVLGVELS 68 (218)
T ss_pred HHHHhCCCeEEEEccC
Confidence 4567789999999975
No 492
>PRK13886 conjugal transfer protein TraL; Provisional
Probab=29.81 E-value=94 Score=24.00 Aligned_cols=38 Identities=13% Similarity=0.166 Sum_probs=27.4
Q ss_pred cEEEEEcCCCCCCCCcchHHHHHHHHHcCccEEEEccc
Q 022960 46 QLVIVCHGFQSTKDRIPMVNLAAALEREGISAFRFDFS 83 (289)
Q Consensus 46 ~~iv~~hG~~~~~~~~~~~~~~~~l~~~G~~v~~~d~~ 83 (289)
..++++-|-||.+.+..-..++..|+++|..|+++|.-
T Consensus 3 ~i~~i~~~KGGvGKSt~a~~la~~l~~~g~~vl~iD~D 40 (241)
T PRK13886 3 KIHMVLQGKGGVGKSFIAATIAQYKASKGQKPLCIDTD 40 (241)
T ss_pred eEEEEecCCCCCcHHHHHHHHHHHHHhCCCCEEEEECC
Confidence 34555666666665544567888899999999999864
No 493
>KOG0855 consensus Alkyl hydroperoxide reductase, thiol specific antioxidant and related enzymes [Posttranslational modification, protein turnover, chaperones]
Probab=29.57 E-value=2.2e+02 Score=20.56 Aligned_cols=57 Identities=12% Similarity=0.158 Sum_probs=35.1
Q ss_pred eEEeeCCCCceEEEEEeecCCCcEEEEEcCCCCCCC----CcchHHHHHHHHHcCccEEEEc
Q 022960 24 RVVIPNSHGEKLVGILHETGSKQLVIVCHGFQSTKD----RIPMVNLAAALEREGISAFRFD 81 (289)
Q Consensus 24 ~~~~~~~~g~~l~~~~~~~~~~~~iv~~hG~~~~~~----~~~~~~~~~~l~~~G~~v~~~d 81 (289)
++++...||..+...-+. +++++|+|+-....+.. ..-++.-.+.+.+.|+.|+.+.
T Consensus 71 D~tL~dedg~sisLkkit-~nk~vV~f~YP~asTPGCTkQaCgFRDnY~k~kka~aeV~GlS 131 (211)
T KOG0855|consen 71 DFTLKDEDGKSISLKKIT-GNKPVVLFFYPAASTPGCTKQACGFRDNYEKFKKAGAEVIGLS 131 (211)
T ss_pred CcccccCCCCeeeeeeec-CCCcEEEEEeccCCCCCcccccccccccHHHHhhcCceEEeec
Confidence 556666777777644333 34577777765433221 1235666788888889998764
No 494
>TIGR02690 resist_ArsH arsenical resistance protein ArsH. Members of this protein family occur in arsenate resistance operons that include at least two different types of arsenate reductase. ArsH is not required for arsenate resistance in some systems. This family belongs to the larger family of NADPH-dependent FMN reductases (Pfam model pfam03358). The function of ArsH is not known.
Probab=29.37 E-value=1.4e+02 Score=22.65 Aligned_cols=39 Identities=18% Similarity=0.116 Sum_probs=20.3
Q ss_pred CcEEEEEcCCCCCCCC--cchHHHHHHHHHcCccEEEEccc
Q 022960 45 KQLVIVCHGFQSTKDR--IPMVNLAAALEREGISAFRFDFS 83 (289)
Q Consensus 45 ~~~iv~~hG~~~~~~~--~~~~~~~~~l~~~G~~v~~~d~~ 83 (289)
.+-|+.+-|-.-.... ...+.+.+.+.+.|+.+-.+|++
T Consensus 26 ~~kI~~I~GSlR~~S~n~~la~~~~~~~~~~g~~v~~idl~ 66 (219)
T TIGR02690 26 IPRILLLYGSLRERSYSRLLAEEAARLLGCEGRETRIFDPP 66 (219)
T ss_pred CCEEEEEECCCCCcchHHHHHHHHHHHHhhcCCEEEEeCcc
Confidence 3456666664433221 12333444445458888888764
No 495
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=29.24 E-value=73 Score=28.73 Aligned_cols=38 Identities=13% Similarity=0.160 Sum_probs=27.9
Q ss_pred CCcEEEEEcCCCCCCCCcchHHHHHHHHHcCccEEEEc
Q 022960 44 SKQLVIVCHGFQSTKDRIPMVNLAAALEREGISAFRFD 81 (289)
Q Consensus 44 ~~~~iv~~hG~~~~~~~~~~~~~~~~l~~~G~~v~~~d 81 (289)
.+|.++++.|..+++.+..-..+++.|...|..++.+|
T Consensus 458 ~~~~~i~~~G~~gsGKst~a~~l~~~l~~~~~~~~~l~ 495 (632)
T PRK05506 458 QKPATVWFTGLSGSGKSTIANLVERRLHALGRHTYLLD 495 (632)
T ss_pred CCcEEEEecCCCCchHHHHHHHHHHHHHHcCCCEEEEc
Confidence 45889999999998866455566677766677777664
No 496
>PRK14494 putative molybdopterin-guanine dinucleotide biosynthesis protein MobB/FeS domain-containing protein protein; Provisional
Probab=29.15 E-value=87 Score=23.94 Aligned_cols=40 Identities=13% Similarity=0.154 Sum_probs=29.9
Q ss_pred EEEEcCCCCCCCCcchHHHHHHHHHcCccEEEEccccCCC
Q 022960 48 VIVCHGFQSTKDRIPMVNLAAALEREGISAFRFDFSGNGE 87 (289)
Q Consensus 48 iv~~hG~~~~~~~~~~~~~~~~l~~~G~~v~~~d~~G~G~ 87 (289)
++.+=|..++..+.....+++.|.++|++|.++...+|+.
T Consensus 3 vi~ivG~~gsGKTtl~~~l~~~L~~~G~~V~viK~~~~~~ 42 (229)
T PRK14494 3 AIGVIGFKDSGKTTLIEKILKNLKERGYRVATAKHTHHEF 42 (229)
T ss_pred EEEEECCCCChHHHHHHHHHHHHHhCCCeEEEEEecccCC
Confidence 5666676666554456788999999999999998876643
No 497
>PLN03006 carbonate dehydratase
Probab=29.12 E-value=80 Score=25.25 Aligned_cols=29 Identities=28% Similarity=0.324 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHhcCCceEEEEEeChhHHHHHH
Q 022960 102 EDLRAIVQDFCAKGRVITAIIGHSKGGNAVLL 133 (289)
Q Consensus 102 ~d~~~~i~~l~~~~~~~~~l~G~S~Gg~~a~~ 133 (289)
.-+.-++..| +.+.|+|+|||-=|.+...
T Consensus 160 aSLEYAV~~L---~V~~IVV~GHs~CGaV~Aa 188 (301)
T PLN03006 160 AALEFSVNTL---NVENILVIGHSRCGGIQAL 188 (301)
T ss_pred hhHHHHHHHh---CCCEEEEecCCCchHHHHH
Confidence 3444555555 8889999999987776654
No 498
>PRK06171 sorbitol-6-phosphate 2-dehydrogenase; Provisional
Probab=29.10 E-value=2.2e+02 Score=21.91 Aligned_cols=33 Identities=21% Similarity=0.299 Sum_probs=23.7
Q ss_pred EEEEcCCCCCCCCcchHHHHHHHHHcCccEEEEcccc
Q 022960 48 VIVCHGFQSTKDRIPMVNLAAALEREGISAFRFDFSG 84 (289)
Q Consensus 48 iv~~hG~~~~~~~~~~~~~~~~l~~~G~~v~~~d~~G 84 (289)
++++-|..+.- -..+++.|.++|+.|+..+...
T Consensus 11 ~vlItG~s~gI----G~~la~~l~~~G~~v~~~~~~~ 43 (266)
T PRK06171 11 IIIVTGGSSGI----GLAIVKELLANGANVVNADIHG 43 (266)
T ss_pred EEEEeCCCChH----HHHHHHHHHHCCCEEEEEeCCc
Confidence 34555655433 5678899999999999988653
No 499
>PRK10162 acetyl esterase; Provisional
Probab=29.07 E-value=2.6e+02 Score=22.56 Aligned_cols=40 Identities=8% Similarity=-0.144 Sum_probs=29.2
Q ss_pred CcEEEEEcCCCCCCCCcchHHHHHHHHHcCccEEEEccccC
Q 022960 45 KQLVIVCHGFQSTKDRIPMVNLAAALEREGISAFRFDFSGN 85 (289)
Q Consensus 45 ~~~iv~~hG~~~~~~~~~~~~~~~~l~~~G~~v~~~d~~G~ 85 (289)
-|++++++|....-.. .-..+.+.|.+.|..|-...++|.
T Consensus 248 lPp~~i~~g~~D~L~d-e~~~~~~~L~~aGv~v~~~~~~g~ 287 (318)
T PRK10162 248 VPPCFIAGAEFDPLLD-DSRLLYQTLAAHQQPCEFKLYPGT 287 (318)
T ss_pred CCCeEEEecCCCcCcC-hHHHHHHHHHHcCCCEEEEEECCC
Confidence 4677888886655432 367788999999988877777764
No 500
>COG0482 TrmU Predicted tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain [Translation, ribosomal structure and biogenesis]
Probab=28.92 E-value=2.6e+02 Score=23.15 Aligned_cols=69 Identities=12% Similarity=0.102 Sum_probs=0.0
Q ss_pred cCCCcEEEEEcCCCCCCCCcchHHHHHHHHHcCccEEEEccccCCCCCCCccccchHHHHHHHHHHHHHHHhcCCceEEE
Q 022960 42 TGSKQLVIVCHGFQSTKDRIPMVNLAAALEREGISAFRFDFSGNGESEGSFLYGNYRREAEDLRAIVQDFCAKGRVITAI 121 (289)
Q Consensus 42 ~~~~~~iv~~hG~~~~~~~~~~~~~~~~l~~~G~~v~~~d~~G~G~s~~~~~~~~~~~~~~d~~~~i~~l~~~~~~~~~l 121 (289)
+....++|.+.|+-.++ . -+..|.++||.|+.+-+.-+.. .........+...|+..+.+.| ++.-.++
T Consensus 1 ~~~~kV~v~mSGGVDSS----V--aA~lLk~QGyeViGl~m~~~~~--~~~~~C~s~~d~~da~~va~~L---GIp~~~v 69 (356)
T COG0482 1 MKKKKVLVGMSGGVDSS----V--AAYLLKEQGYEVIGLFMKNWDE--DGGGGCCSEEDLRDAERVADQL---GIPLYVV 69 (356)
T ss_pred CCCcEEEEEccCCHHHH----H--HHHHHHHcCCeEEEEEEEeecc--CCCCcCCchhHHHHHHHHHHHh---CCceEEE
Done!