BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 022961
(289 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3UE6|A Chain A, The Dark Structure Of The Blue-light Photoreceptor
Aureochrome1 Lov
pdb|3UE6|B Chain B, The Dark Structure Of The Blue-light Photoreceptor
Aureochrome1 Lov
pdb|3UE6|C Chain C, The Dark Structure Of The Blue-light Photoreceptor
Aureochrome1 Lov
pdb|3UE6|D Chain D, The Dark Structure Of The Blue-light Photoreceptor
Aureochrome1 Lov
pdb|3UE6|E Chain E, The Dark Structure Of The Blue-light Photoreceptor
Aureochrome1 Lov
pdb|3UE6|F Chain F, The Dark Structure Of The Blue-light Photoreceptor
Aureochrome1 Lov
Length = 166
Score = 84.3 bits (207), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 46/111 (41%), Positives = 61/111 (54%), Gaps = 5/111 (4%)
Query: 22 EALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNXXXXXX 81
+AL +F ITD S+ +PIV+ASRGFL ++G+S +I+GRN R QGP T+
Sbjct: 39 KALQMAQQNFVITDASLPDNPIVYASRGFLTLTGYSLDQILGRNCRFLQGPETDPRAVDK 98
Query: 82 XXXXXXXXXXXXVNLLNYKKDGTPFWMLFKMSLVFGKED--GRATHFVAVQ 130
V LLNY++DGT FW LF V G D G ++V VQ
Sbjct: 99 IRNAITKGVDTSVCLLNYRQDGTTFWNLF---FVAGLRDSKGNIVNYVGVQ 146
Score = 41.6 bits (96), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 20/37 (54%), Positives = 25/37 (67%)
Query: 242 SLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTG 278
SL +L +Q+FV+ D LPD P+VYAS FL LTG
Sbjct: 36 SLVKALQMAQQNFVITDASLPDNPIVYASRGFLTLTG 72
>pdb|3ULF|A Chain A, The Light State Structure Of The Blue-light Photoreceptor
Aureochrome1 Lov
pdb|3ULF|B Chain B, The Light State Structure Of The Blue-light Photoreceptor
Aureochrome1 Lov
pdb|3ULF|C Chain C, The Light State Structure Of The Blue-light Photoreceptor
Aureochrome1 Lov
pdb|3ULF|D Chain D, The Light State Structure Of The Blue-light Photoreceptor
Aureochrome1 Lov
pdb|3ULF|E Chain E, The Light State Structure Of The Blue-light Photoreceptor
Aureochrome1 Lov
pdb|3ULF|F Chain F, The Light State Structure Of The Blue-light Photoreceptor
Aureochrome1 Lov
Length = 170
Score = 84.0 bits (206), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 46/111 (41%), Positives = 61/111 (54%), Gaps = 5/111 (4%)
Query: 22 EALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNXXXXXX 81
+AL +F ITD S+ +PIV+ASRGFL ++G+S +I+GRN R QGP T+
Sbjct: 43 KALQMAQQNFVITDASLPDNPIVYASRGFLTLTGYSLDQILGRNCRFLQGPETDPRAVDK 102
Query: 82 XXXXXXXXXXXXVNLLNYKKDGTPFWMLFKMSLVFGKED--GRATHFVAVQ 130
V LLNY++DGT FW LF V G D G ++V VQ
Sbjct: 103 IRNAITKGVDTSVCLLNYRQDGTTFWNLF---FVAGLRDSKGNIVNYVGVQ 150
Score = 41.6 bits (96), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 20/37 (54%), Positives = 25/37 (67%)
Query: 242 SLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTG 278
SL +L +Q+FV+ D LPD P+VYAS FL LTG
Sbjct: 40 SLVKALQMAQQNFVITDASLPDNPIVYASRGFLTLTG 76
>pdb|2Z6D|A Chain A, Crystal Structure Of Lov1 Domain Of Phototropin2 From
Arabidopsis Thaliana
pdb|2Z6D|B Chain B, Crystal Structure Of Lov1 Domain Of Phototropin2 From
Arabidopsis Thaliana
Length = 130
Score = 83.6 bits (205), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 45/120 (37%), Positives = 63/120 (52%), Gaps = 3/120 (2%)
Query: 15 RYTLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRT 74
R + + AL L +F ++D + PIV+AS GF M+G+S EI+GRN R QGP T
Sbjct: 3 RVSQELKTALSTLQQTFVVSDATQPHCPIVYASSGFFTMTGYSSKEIVGRNCRFLQGPDT 62
Query: 75 NXXXXXXXXXXXXXXXXXXVNLLNYKKDGTPFWMLFKMSLVFGKED-GRATHFVAVQVPI 133
+ LLNYKKDGTPFW L ++ + K+D G F+ +QV +
Sbjct: 63 DKNEVAKIRDCVKNGKSYCGRLLNYKKDGTPFWNLLTVTPI--KDDQGNTIKFIGMQVEV 120
Score = 38.1 bits (87), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 24/40 (60%)
Query: 239 ISSSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTG 278
+S L +L ++Q+FV+ D P P+VYAS F +TG
Sbjct: 4 VSQELKTALSTLQQTFVVSDATQPHCPIVYASSGFFTMTG 43
>pdb|2WKQ|A Chain A, Structure Of A Photoactivatable Rac1 Containing The Lov2
C450a Mutant
Length = 332
Score = 83.2 bits (204), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 41/120 (34%), Positives = 65/120 (54%), Gaps = 3/120 (2%)
Query: 24 LDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNXXXXXXXX 83
L+ + +F ITDP + +PI+FAS FL+++ +SR EI+GRN R QGP T+
Sbjct: 17 LERIEKNFVITDPRLPDNPIIFASDSFLQLTEYSREEILGRNARFLQGPETDRATVRKIR 76
Query: 84 XXXXXXXXXXVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHMRNSG 143
V L+NY K G FW LF + + ++ G +F+ VQ+ +H+R++
Sbjct: 77 DAIDNQTEVTVQLINYTKSGKKFWNLFHLQPMRDQK-GDVQYFIGVQLD--GTEHVRDAA 133
Score = 48.1 bits (113), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 20/36 (55%), Positives = 30/36 (83%)
Query: 242 SLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLT 277
SL +L RI+++FV+ DP LPD P+++ASD+FL+LT
Sbjct: 12 SLATTLERIEKNFVITDPRLPDNPIIFASDSFLQLT 47
>pdb|2V1A|A Chain A, N- And C-Terminal Helices Of Oat Lov2 (404-546) Are
Involved In Light-Induced Signal Transduction (Room
Temperature (293k) Dark Structure Of Lov2 (404-546))
pdb|2V1B|A Chain A, N- And C-Terminal Helices Of Oat Lov2 (404-546) Are
Involved In Light-Induced Signal Transduction (Room
Temperature (293k) Light Structure Of Lov2 (404-546))
Length = 144
Score = 83.2 bits (204), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 41/121 (33%), Positives = 65/121 (53%), Gaps = 3/121 (2%)
Query: 23 ALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNXXXXXXX 82
L+ + +F ITDP + +PI+FAS FL+++ +SR EI+GRN R QGP T+
Sbjct: 5 TLERIEKNFVITDPRLPDNPIIFASDSFLQLTEYSREEILGRNCRFLQGPETDRATVRKI 64
Query: 83 XXXXXXXXXXXVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHMRNS 142
V L+NY K G FW LF + + ++ G +F+ VQ+ +H+R++
Sbjct: 65 RDAIDNQTEVTVQLINYTKSGKKFWNLFHLQPMRDQK-GDVQYFIGVQLD--GTEHVRDA 121
Query: 143 G 143
Sbjct: 122 A 122
Score = 48.1 bits (113), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 19/35 (54%), Positives = 29/35 (82%)
Query: 243 LYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLT 277
L +L RI+++FV+ DP LPD P+++ASD+FL+LT
Sbjct: 2 LATTLERIEKNFVITDPRLPDNPIIFASDSFLQLT 36
>pdb|2V0U|A Chain A, N- And C-terminal Helices Of Oat Lov2 (404-546) Are
Involved In Light-induced Signal Transduction (cryo Dark
Structure Of Lov2 (404-546))
pdb|2V0W|A Chain A, N- And C-Terminal Helices Of Oat Lov2 (404-546) Are
Involved In Light-Induced Signal Transduction (Cryo-
Trapped Light Structure Of Lov2 (404-546))
Length = 146
Score = 83.2 bits (204), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 41/121 (33%), Positives = 65/121 (53%), Gaps = 3/121 (2%)
Query: 23 ALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNXXXXXXX 82
L+ + +F ITDP + +PI+FAS FL+++ +SR EI+GRN R QGP T+
Sbjct: 7 TLERIEKNFVITDPRLPDNPIIFASDSFLQLTEYSREEILGRNCRFLQGPETDRATVRKI 66
Query: 83 XXXXXXXXXXXVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHMRNS 142
V L+NY K G FW LF + + ++ G +F+ VQ+ +H+R++
Sbjct: 67 RDAIDNQTEVTVQLINYTKSGKKFWNLFHLQPMRDQK-GDVQYFIGVQLD--GTEHVRDA 123
Query: 143 G 143
Sbjct: 124 A 124
Score = 48.1 bits (113), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 19/35 (54%), Positives = 29/35 (82%)
Query: 243 LYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLT 277
L +L RI+++FV+ DP LPD P+++ASD+FL+LT
Sbjct: 4 LATTLERIEKNFVITDPRLPDNPIIFASDSFLQLT 38
>pdb|4EEU|A Chain A, Crystal Structure Of Philov2.1
Length = 118
Score = 82.4 bits (202), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 40/102 (39%), Positives = 56/102 (54%), Gaps = 1/102 (0%)
Query: 30 SFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNXXXXXXXXXXXXXX 89
SF ITDP + +PI+FAS GFL+++ +SR EI+GRN R QGP T+
Sbjct: 12 SFVITDPRLPDYPIIFASDGFLELTEYSREEIMGRNARFLQGPETDQATVQKIRDAIRDQ 71
Query: 90 XXXXVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQV 131
V L+NY K G FW L + V ++ G +F+ VQ+
Sbjct: 72 RETTVQLINYTKSGKKFWNLLHLQPVRDRKGG-LQYFIGVQL 112
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 17/28 (60%), Positives = 24/28 (85%)
Query: 250 IKQSFVLIDPHLPDMPMVYASDAFLKLT 277
I++SFV+ DP LPD P+++ASD FL+LT
Sbjct: 9 IEKSFVITDPRLPDYPIIFASDGFLELT 36
>pdb|4EES|A Chain A, Crystal Structure Of Ilov
pdb|4EET|B Chain B, Crystal Structure Of Ilov
pdb|4EET|D Chain D, Crystal Structure Of Ilov
Length = 115
Score = 82.4 bits (202), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 39/102 (38%), Positives = 56/102 (54%), Gaps = 1/102 (0%)
Query: 30 SFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNXXXXXXXXXXXXXX 89
+F ITDP + +PI+FAS GFL+++ +SR EI+GRN R QGP T+
Sbjct: 9 NFVITDPRLPDNPIIFASDGFLELTEYSREEILGRNARFLQGPETDQATVQKIRDAIRDQ 68
Query: 90 XXXXVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQV 131
V L+NY K G FW L + V ++ G +F+ VQ+
Sbjct: 69 RETTVQLINYTKSGKKFWNLLHLQPVRDQK-GELQYFIGVQL 109
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 16/28 (57%), Positives = 24/28 (85%)
Query: 250 IKQSFVLIDPHLPDMPMVYASDAFLKLT 277
I+++FV+ DP LPD P+++ASD FL+LT
Sbjct: 6 IEKNFVITDPRLPDNPIIFASDGFLELT 33
>pdb|2WKP|A Chain A, Structure Of A Photoactivatable Rac1 Containing Lov2
Wildtype
Length = 332
Score = 82.4 bits (202), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 41/121 (33%), Positives = 65/121 (53%), Gaps = 3/121 (2%)
Query: 23 ALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNXXXXXXX 82
L+ + +F ITDP + +PI+FAS FL+++ +SR EI+GRN R QGP T+
Sbjct: 16 TLERIEKNFVITDPRLPDNPIIFASDSFLQLTEYSREEILGRNCRFLQGPETDRATVRKI 75
Query: 83 XXXXXXXXXXXVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHMRNS 142
V L+NY K G FW LF + + ++ G +F+ VQ+ +H+R++
Sbjct: 76 RDAIDNQTEVTVQLINYTKSGKKFWNLFHLQPMRDQK-GDVQYFIGVQLD--GTEHVRDA 132
Query: 143 G 143
Sbjct: 133 A 133
Score = 48.1 bits (113), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 20/36 (55%), Positives = 30/36 (83%)
Query: 242 SLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLT 277
SL +L RI+++FV+ DP LPD P+++ASD+FL+LT
Sbjct: 12 SLATTLERIEKNFVITDPRLPDNPIIFASDSFLQLT 47
>pdb|2WKR|A Chain A, Structure Of A Photoactivatable Rac1 Containing The Lov2
C450m Mutant
Length = 332
Score = 82.0 bits (201), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 41/121 (33%), Positives = 65/121 (53%), Gaps = 3/121 (2%)
Query: 23 ALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNXXXXXXX 82
L+ + +F ITDP + +PI+FAS FL+++ +SR EI+GRN R QGP T+
Sbjct: 16 TLERIEKNFVITDPRLPDNPIIFASDSFLQLTEYSREEILGRNMRFLQGPETDRATVRKI 75
Query: 83 XXXXXXXXXXXVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHMRNS 142
V L+NY K G FW LF + + ++ G +F+ VQ+ +H+R++
Sbjct: 76 RDAIDNQTEVTVQLINYTKSGKKFWNLFHLQPMRDQK-GDVQYFIGVQLD--GTEHVRDA 132
Query: 143 G 143
Sbjct: 133 A 133
Score = 48.1 bits (113), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 20/36 (55%), Positives = 30/36 (83%)
Query: 242 SLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLT 277
SL +L RI+++FV+ DP LPD P+++ASD+FL+LT
Sbjct: 12 SLATTLERIEKNFVITDPRLPDNPIIFASDSFLQLT 47
>pdb|1N9L|A Chain A, Crystal Structure Of The Phot-lov1 Domain From
Chlamydomonas Reinhardtii In The Dark State.
pdb|1N9N|A Chain A, Crystal Structure Of The Phot-Lov1 Domain From
Chlamydomonas Reinhardtii In Illuminated State. Data Set
Of A Single Crystal.
pdb|1N9O|A Chain A, Crystal Structure Of The Phot-Lov1 Domain From
Chlamydomonas Reinhardtii In Illuminated State.
Composite Data Set
Length = 109
Score = 79.3 bits (194), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 39/106 (36%), Positives = 56/106 (52%), Gaps = 1/106 (0%)
Query: 30 SFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNXXXXXXXXXXXXXX 89
+F + D ++ P+V+AS GF M+G+ E++G N R QG T+
Sbjct: 5 TFVVADATLPDCPLVYASEGFYAMTGYGPDEVLGHNCRFLQGEGTDPKEVQKIRDAIKKG 64
Query: 90 XXXXVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVS 135
V LLNY+KDGTPFW L ++ + DGR + FV VQV + S
Sbjct: 65 EACSVRLLNYRKDGTPFWNLLTVTPI-KTPDGRVSKFVGVQVDVTS 109
Score = 37.0 bits (84), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 21/29 (72%)
Query: 250 IKQSFVLIDPHLPDMPMVYASDAFLKLTG 278
++ +FV+ D LPD P+VYAS+ F +TG
Sbjct: 2 LRHTFVVADATLPDCPLVYASEGFYAMTG 30
>pdb|4EER|A Chain A, Crystal Structure Of Lov2 Domain Of Arabidopsis Thaliana
Phototropin 2 C426a Mutant
Length = 115
Score = 79.0 bits (193), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 37/102 (36%), Positives = 56/102 (54%), Gaps = 1/102 (0%)
Query: 30 SFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNXXXXXXXXXXXXXX 89
+F I+DP + +PI+FAS FL+++ +SR EI+GRN R QGP T+
Sbjct: 9 NFVISDPRLPDNPIIFASDSFLELTEYSREEILGRNARFLQGPETDQATVQKIRDAIRDQ 68
Query: 90 XXXXVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQV 131
V L+NY K G FW LF + + ++ G +F+ VQ+
Sbjct: 69 REITVQLINYTKSGKKFWNLFHLQPMRDQK-GELQYFIGVQL 109
Score = 42.0 bits (97), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 16/28 (57%), Positives = 25/28 (89%)
Query: 250 IKQSFVLIDPHLPDMPMVYASDAFLKLT 277
I+++FV+ DP LPD P+++ASD+FL+LT
Sbjct: 6 IEKNFVISDPRLPDNPIIFASDSFLELT 33
>pdb|4EEP|A Chain A, Crystal Structure Of Lov2 Domain Of Arabidopsis Thaliana
Phototropin 2
Length = 115
Score = 78.2 bits (191), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 37/102 (36%), Positives = 56/102 (54%), Gaps = 1/102 (0%)
Query: 30 SFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNXXXXXXXXXXXXXX 89
+F I+DP + +PI+FAS FL+++ +SR EI+GRN R QGP T+
Sbjct: 9 NFVISDPRLPDNPIIFASDSFLELTEYSREEILGRNCRFLQGPETDQATVQKIRDAIRDQ 68
Query: 90 XXXXVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQV 131
V L+NY K G FW LF + + ++ G +F+ VQ+
Sbjct: 69 REITVQLINYTKSGKKFWNLFHLQPMRDQK-GELQYFIGVQL 109
Score = 41.6 bits (96), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 16/28 (57%), Positives = 25/28 (89%)
Query: 250 IKQSFVLIDPHLPDMPMVYASDAFLKLT 277
I+++FV+ DP LPD P+++ASD+FL+LT
Sbjct: 6 IEKNFVISDPRLPDNPIIFASDSFLELT 33
>pdb|2Z6C|A Chain A, Crystal Structure Of Lov1 Domain Of Phototropin1 From
Arabidopsis Thaliana
pdb|2Z6C|B Chain B, Crystal Structure Of Lov1 Domain Of Phototropin1 From
Arabidopsis Thaliana
Length = 129
Score = 76.3 bits (186), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 36/114 (31%), Positives = 59/114 (51%), Gaps = 1/114 (0%)
Query: 20 VHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNXXXX 79
+ +AL +F ++D + +PI++AS GF M+G++ E++GRN R QG T+
Sbjct: 9 LKDALSTFQQTFVVSDATKPDYPIMYASAGFFNMTGYTSKEVVGRNCRFLQGSGTDADEL 68
Query: 80 XXXXXXXXXXXXXXVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPI 133
+LNYKKDGT FW L ++ + E G+ F+ +QV +
Sbjct: 69 AKIRETLAAGNNYCGRILNYKKDGTSFWNLLTIAPI-KDESGKVLKFIGMQVEV 121
Score = 38.1 bits (87), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 26/44 (59%)
Query: 235 GMGFISSSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTG 278
G+ +S L +L +Q+FV+ D PD P++YAS F +TG
Sbjct: 1 GIPRVSEDLKDALSTFQQTFVVSDATKPDYPIMYASAGFFNMTG 44
>pdb|2PR5|A Chain A, Structural Basis For Light-dependent Signaling In The
Dimeric Lov Photosensor Ytva (dark Structure)
pdb|2PR5|B Chain B, Structural Basis For Light-dependent Signaling In The
Dimeric Lov Photosensor Ytva (dark Structure)
pdb|2PR6|A Chain A, Structural Basis For Light-dependent Signaling In The
Dimeric Lov Photosensor Ytva (light Structure)
pdb|2PR6|B Chain B, Structural Basis For Light-dependent Signaling In The
Dimeric Lov Photosensor Ytva (light Structure)
Length = 132
Score = 74.7 bits (182), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 38/115 (33%), Positives = 58/115 (50%), Gaps = 3/115 (2%)
Query: 24 LDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNXXXXXXXX 83
LD + ITDP++ +PIV+ ++GF++M+G+ EI+G+N R QG T+
Sbjct: 5 LDHVRVGVVITDPALEDNPIVYVNQGFVQMTGYETEEILGKNCRFLQGKHTDPAEVDNIR 64
Query: 84 XXXXXXXXXXVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKH 138
V + NYKKDGT FW + + E T+FV +Q I +K
Sbjct: 65 TALQNKEPVTVQIQNYKKDGTMFWNELNIDPM---EIEDKTYFVGIQNDITKQKE 116
Score = 32.7 bits (73), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 21/34 (61%)
Query: 247 LGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGAQ 280
L ++ V+ DP L D P+VY + F+++TG +
Sbjct: 5 LDHVRVGVVITDPALEDNPIVYVNQGFVQMTGYE 38
>pdb|1G28|A Chain A, Structure Of A Flavin-Binding Domain, Lov2, From The
Chimeric PhytochromePHOTOTROPIN PHOTORECEPTOR PHY3
pdb|1G28|B Chain B, Structure Of A Flavin-Binding Domain, Lov2, From The
Chimeric PhytochromePHOTOTROPIN PHOTORECEPTOR PHY3
pdb|1G28|C Chain C, Structure Of A Flavin-Binding Domain, Lov2, From The
Chimeric PhytochromePHOTOTROPIN PHOTORECEPTOR PHY3
pdb|1G28|D Chain D, Structure Of A Flavin-Binding Domain, Lov2, From The
Chimeric PhytochromePHOTOTROPIN PHOTORECEPTOR PHY3
pdb|1JNU|A Chain A, Photoexcited Structure Of The Plant Photoreceptor Domain,
Phy3 Lov2
pdb|1JNU|B Chain B, Photoexcited Structure Of The Plant Photoreceptor Domain,
Phy3 Lov2
pdb|1JNU|C Chain C, Photoexcited Structure Of The Plant Photoreceptor Domain,
Phy3 Lov2
pdb|1JNU|D Chain D, Photoexcited Structure Of The Plant Photoreceptor Domain,
Phy3 Lov2
Length = 104
Score = 73.9 bits (180), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 37/101 (36%), Positives = 53/101 (52%), Gaps = 1/101 (0%)
Query: 30 SFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNXXXXXXXXXXXXXX 89
SF ITDP + +PI+FAS FL+++ ++R E++G N R QG T+
Sbjct: 2 SFVITDPRLPDNPIIFASDRFLELTEYTREEVLGNNCRFLQGRGTDRKAVQLIRDAVKEQ 61
Query: 90 XXXXVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQ 130
V +LNY K G FW LF + V E+G +F+ VQ
Sbjct: 62 RDVTVQVLNYTKGGRAFWNLFHLQ-VMRDENGDVQYFIGVQ 101
Score = 41.2 bits (95), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 16/26 (61%), Positives = 22/26 (84%)
Query: 252 QSFVLIDPHLPDMPMVYASDAFLKLT 277
+SFV+ DP LPD P+++ASD FL+LT
Sbjct: 1 KSFVITDPRLPDNPIIFASDRFLELT 26
>pdb|3T50|A Chain A, X-Ray Structure Of The Lov Domain From The Lov-Hk Sensory
Protein From Brucella Abortus (Dark State).
pdb|3T50|B Chain B, X-Ray Structure Of The Lov Domain From The Lov-Hk Sensory
Protein From Brucella Abortus (Dark State)
Length = 128
Score = 70.9 bits (172), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 35/99 (35%), Positives = 53/99 (53%), Gaps = 1/99 (1%)
Query: 33 ITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNXXXXXXXXXXXXXXXXX 92
IT+P + +PIVFA+ FLK++G+ E++GRN R QG T+
Sbjct: 12 ITNPHLPDNPIVFANPAFLKLTGYEADEVMGRNCRFLQGHGTDPAHVRAIKSAIAAEKPI 71
Query: 93 XVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQV 131
++++NYKK G FW +S V +GR HFV+ Q+
Sbjct: 72 DIDIINYKKSGEAFWNRLHISPVHNA-NGRLQHFVSSQL 109
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 15/26 (57%), Positives = 22/26 (84%)
Query: 255 VLIDPHLPDMPMVYASDAFLKLTGAQ 280
++ +PHLPD P+V+A+ AFLKLTG +
Sbjct: 11 LITNPHLPDNPIVFANPAFLKLTGYE 36
>pdb|3P7N|A Chain A, Crystal Structure Of Light Activated Transcription Factor
El222 From Erythrobacter Litoralis
pdb|3P7N|B Chain B, Crystal Structure Of Light Activated Transcription Factor
El222 From Erythrobacter Litoralis
Length = 258
Score = 62.8 bits (151), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/130 (26%), Positives = 63/130 (48%), Gaps = 3/130 (2%)
Query: 19 WVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNXXX 78
WV + ++ P + ++DP ++ +P++ ++ F ++G+S E +GRN R G T
Sbjct: 64 WVLDLIEASPIASVVSDPRLADNPLIAINQAFTDLTGYSEEECVGRNCRFLAGSGTEPWL 123
Query: 79 XXXXXXXXXXXXXXXVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKH 138
V +LNYKKDGTPF ++ ++ +D +F+ QV + +
Sbjct: 124 TDKIRQGVREHKPVLVEILNYKKDGTPFRNAVLVAPIY-DDDDELLYFLGSQVEVDDDQP 182
Query: 139 MRNSGMSYSE 148
N GM+ E
Sbjct: 183 --NMGMARRE 190
>pdb|4HIA|A Chain A, Crystal Structure Of Rhodobacter Sphaeroides Lov Protein
pdb|4HIA|B Chain B, Crystal Structure Of Rhodobacter Sphaeroides Lov Protein
Length = 176
Score = 45.8 bits (107), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 45/101 (44%), Gaps = 1/101 (0%)
Query: 30 SFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNXXXXXXXXXXXXXX 89
+ T+ D S+ P+V A+ FL+M+G++ +I+G N R Q N
Sbjct: 19 ALTLVDMSLPEQPVVLANPPFLRMTGYTEGQILGFNCRFLQRGDENAQARADIRDALKLG 78
Query: 90 XXXXVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQ 130
V L NY+ + PF L + V G+ D +F+ Q
Sbjct: 79 RELQVVLRNYRANDEPFDNLLFLHPVGGRPDA-PDYFLGSQ 118
Score = 29.3 bits (64), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 18/26 (69%)
Query: 253 SFVLIDPHLPDMPMVYASDAFLKLTG 278
+ L+D LP+ P+V A+ FL++TG
Sbjct: 19 ALTLVDMSLPEQPVVLANPPFLRMTG 44
>pdb|2PD7|A Chain A, 2.0 Angstrom Crystal Structure Of The Fungal Blue-Light
Photoreceptor Vivid
pdb|2PD7|B Chain B, 2.0 Angstrom Crystal Structure Of The Fungal Blue-Light
Photoreceptor Vivid
pdb|2PDR|A Chain A, 1.7 Angstrom Crystal Structure Of The Photo-excited
Blue- Light Photoreceptor Vivid
pdb|2PDR|B Chain B, 1.7 Angstrom Crystal Structure Of The Photo-excited
Blue- Light Photoreceptor Vivid
pdb|2PDR|C Chain C, 1.7 Angstrom Crystal Structure Of The Photo-excited
Blue- Light Photoreceptor Vivid
pdb|2PDR|D Chain D, 1.7 Angstrom Crystal Structure Of The Photo-excited
Blue- Light Photoreceptor Vivid
pdb|2PDT|A Chain A, 2.3 Angstrom Structure Of Phosphodiesterase Treated
Vivid
pdb|2PDT|B Chain B, 2.3 Angstrom Structure Of Phosphodiesterase Treated
Vivid
pdb|2PDT|C Chain C, 2.3 Angstrom Structure Of Phosphodiesterase Treated
Vivid
pdb|2PDT|D Chain D, 2.3 Angstrom Structure Of Phosphodiesterase Treated
Vivid
Length = 149
Score = 45.4 bits (106), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 18/31 (58%), Positives = 23/31 (74%)
Query: 42 PIVFASRGFLKMSGFSRAEIIGRNGRMFQGP 72
PIV+AS FL M+G+S AE++GRN R Q P
Sbjct: 49 PIVYASEAFLYMTGYSNAEVLGRNCRFLQSP 79
Score = 31.6 bits (70), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 22/36 (61%), Gaps = 2/36 (5%)
Query: 245 ISLGRIKQS--FVLIDPHLPDMPMVYASDAFLKLTG 278
+ LG + S +L D D P+VYAS+AFL +TG
Sbjct: 27 VELGPVDTSCALILCDLKQKDTPIVYASEAFLYMTG 62
>pdb|3RH8|B Chain B, Crystal Structure Of The Light-State Dimer Of Fungal
Blue-Light Photoreceptor Vivid
pdb|3RH8|D Chain D, Crystal Structure Of The Light-State Dimer Of Fungal
Blue-Light Photoreceptor Vivid
Length = 148
Score = 45.4 bits (106), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 18/31 (58%), Positives = 23/31 (74%)
Query: 42 PIVFASRGFLKMSGFSRAEIIGRNGRMFQGP 72
PIV+AS FL M+G+S AE++GRN R Q P
Sbjct: 48 PIVYASEAFLYMTGYSNAEVLGRNCRFLQSP 78
Score = 31.6 bits (70), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 22/36 (61%), Gaps = 2/36 (5%)
Query: 245 ISLGRIKQS--FVLIDPHLPDMPMVYASDAFLKLTG 278
+ LG + S +L D D P+VYAS+AFL +TG
Sbjct: 26 VELGPVDTSCALILCDLKQKDTPIVYASEAFLYMTG 61
>pdb|3HJK|A Chain A, 2.0 Angstrom Structure Of The Ile74val Variant Of Vivid
(Vvd).
pdb|3HJK|B Chain B, 2.0 Angstrom Structure Of The Ile74val Variant Of Vivid
(Vvd)
Length = 154
Score = 45.4 bits (106), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 18/31 (58%), Positives = 23/31 (74%)
Query: 42 PIVFASRGFLKMSGFSRAEIIGRNGRMFQGP 72
PIV+AS FL M+G+S AE++GRN R Q P
Sbjct: 52 PIVYASEAFLYMTGYSNAEVLGRNCRFLQSP 82
Score = 32.0 bits (71), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 17/36 (47%), Positives = 22/36 (61%), Gaps = 2/36 (5%)
Query: 245 ISLGRIKQS--FVLIDPHLPDMPMVYASDAFLKLTG 278
+ LG + S VL D D P+VYAS+AFL +TG
Sbjct: 30 VELGPVDTSCALVLCDLKQKDTPIVYASEAFLYMTG 65
>pdb|3IS2|B Chain B, 2.3 Angstrom Crystal Structure Of A Cys71 Sulfenic Acid
Form Of Vivid
Length = 154
Score = 45.4 bits (106), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 18/31 (58%), Positives = 23/31 (74%)
Query: 42 PIVFASRGFLKMSGFSRAEIIGRNGRMFQGP 72
PIV+AS FL M+G+S AE++GRN R Q P
Sbjct: 52 PIVYASEAFLYMTGYSNAEVLGRNCRFLQSP 82
Score = 31.6 bits (70), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 22/36 (61%), Gaps = 2/36 (5%)
Query: 245 ISLGRIKQS--FVLIDPHLPDMPMVYASDAFLKLTG 278
+ LG + S +L D D P+VYAS+AFL +TG
Sbjct: 30 VELGPVDTSCALILCDLKQKDTPIVYASEAFLYMTG 65
>pdb|2PD8|A Chain A, 1.8 Angstrom Crystal Structure Of The Cys71ser Mutant Of
Vivid
pdb|2PD8|B Chain B, 1.8 Angstrom Crystal Structure Of The Cys71ser Mutant Of
Vivid
Length = 149
Score = 45.4 bits (106), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 18/31 (58%), Positives = 23/31 (74%)
Query: 42 PIVFASRGFLKMSGFSRAEIIGRNGRMFQGP 72
PIV+AS FL M+G+S AE++GRN R Q P
Sbjct: 49 PIVYASEAFLYMTGYSNAEVLGRNCRFLQSP 79
Score = 31.2 bits (69), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 22/36 (61%), Gaps = 2/36 (5%)
Query: 245 ISLGRIKQS--FVLIDPHLPDMPMVYASDAFLKLTG 278
+ LG + S +L D D P+VYAS+AFL +TG
Sbjct: 27 VELGPVDTSSALILCDLKQKDTPIVYASEAFLYMTG 62
>pdb|3D72|A Chain A, 1.65 Angstrom Crystal Structure Of The Cys71val Variant
In The Fungal Photoreceptor Vvd
pdb|3D72|B Chain B, 1.65 Angstrom Crystal Structure Of The Cys71val Variant
In The Fungal Photoreceptor Vvd
Length = 149
Score = 45.4 bits (106), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 18/31 (58%), Positives = 23/31 (74%)
Query: 42 PIVFASRGFLKMSGFSRAEIIGRNGRMFQGP 72
PIV+AS FL M+G+S AE++GRN R Q P
Sbjct: 49 PIVYASEAFLYMTGYSNAEVLGRNCRFLQSP 79
Score = 32.0 bits (71), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 17/36 (47%), Positives = 22/36 (61%), Gaps = 2/36 (5%)
Query: 245 ISLGRIKQSFVLI--DPHLPDMPMVYASDAFLKLTG 278
+ LG + S LI D D P+VYAS+AFL +TG
Sbjct: 27 VELGPVDTSVALILCDLKQKDTPIVYASEAFLYMTG 62
>pdb|3IS2|A Chain A, 2.3 Angstrom Crystal Structure Of A Cys71 Sulfenic Acid
Form Of Vivid
Length = 154
Score = 45.4 bits (106), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 18/31 (58%), Positives = 23/31 (74%)
Query: 42 PIVFASRGFLKMSGFSRAEIIGRNGRMFQGP 72
PIV+AS FL M+G+S AE++GRN R Q P
Sbjct: 52 PIVYASEAFLYMTGYSNAEVLGRNCRFLQSP 82
Score = 31.6 bits (70), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 17/36 (47%), Positives = 22/36 (61%), Gaps = 2/36 (5%)
Query: 245 ISLGRIKQSFVLI--DPHLPDMPMVYASDAFLKLTG 278
+ LG + S LI D D P+VYAS+AFL +TG
Sbjct: 30 VELGPVDTSXALILCDLKQKDTPIVYASEAFLYMTG 65
>pdb|4HJ6|A Chain A, Crystal Structure Of Rhodobacter Sphaeroides Lov Protein
pdb|4HJ6|B Chain B, Crystal Structure Of Rhodobacter Sphaeroides Lov Protein
Length = 178
Score = 45.4 bits (106), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 45/101 (44%), Gaps = 1/101 (0%)
Query: 30 SFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNXXXXXXXXXXXXXX 89
+ T+ D S+ P+V A+ FL+M+G++ +I+G N R Q N
Sbjct: 21 ALTLVDMSLPEQPLVLANPPFLRMTGYTEGQILGFNCRFLQRGDENAQARADIRDALKLG 80
Query: 90 XXXXVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQ 130
V L NY+ + PF L + V G+ D +F+ Q
Sbjct: 81 RELQVVLRNYRANDEPFDNLLFLHPVGGRPDA-PDYFLGSQ 120
Score = 29.6 bits (65), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 18/26 (69%)
Query: 253 SFVLIDPHLPDMPMVYASDAFLKLTG 278
+ L+D LP+ P+V A+ FL++TG
Sbjct: 21 ALTLVDMSLPEQPLVLANPPFLRMTG 46
>pdb|4HJ4|A Chain A, Crystal Structure Of Rhodobacter Sphaeroides Lov Protein
pdb|4HJ4|B Chain B, Crystal Structure Of Rhodobacter Sphaeroides Lov Protein
pdb|4HNB|A Chain A, Crystal Structure Of Rhodobacter Sphaeroides Lov Protein
pdb|4HNB|B Chain B, Crystal Structure Of Rhodobacter Sphaeroides Lov Protein
Length = 177
Score = 45.4 bits (106), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 45/101 (44%), Gaps = 1/101 (0%)
Query: 30 SFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNXXXXXXXXXXXXXX 89
+ T+ D S+ P+V A+ FL+M+G++ +I+G N R Q N
Sbjct: 20 ALTLVDMSLPEQPLVLANPPFLRMTGYTEGQILGFNCRFLQRGDENAQARADIRDALKLG 79
Query: 90 XXXXVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQ 130
V L NY+ + PF L + V G+ D +F+ Q
Sbjct: 80 RELQVVLRNYRANDEPFDNLLFLHPVGGRPDA-PDYFLGSQ 119
Score = 30.0 bits (66), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 18/26 (69%)
Query: 253 SFVLIDPHLPDMPMVYASDAFLKLTG 278
+ L+D LP+ P+V A+ FL++TG
Sbjct: 20 ALTLVDMSLPEQPLVLANPPFLRMTG 45
>pdb|4HJ3|A Chain A, Crystal Structure Of Rhodobacter Sphaeroides Lov Protein
pdb|4HJ3|B Chain B, Crystal Structure Of Rhodobacter Sphaeroides Lov Protein
Length = 176
Score = 45.1 bits (105), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 45/101 (44%), Gaps = 1/101 (0%)
Query: 30 SFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNXXXXXXXXXXXXXX 89
+ T+ D S+ P+V A+ FL+M+G++ +I+G N R Q N
Sbjct: 19 ALTLVDMSLPEQPLVLANPPFLRMTGYTEGQILGFNCRFLQRGDENAQARADIRDALKLG 78
Query: 90 XXXXVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQ 130
V L NY+ + PF L + V G+ D +F+ Q
Sbjct: 79 RELQVVLRNYRANDEPFDNLLFLHPVGGRPDA-PDYFLGSQ 118
Score = 29.6 bits (65), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 18/26 (69%)
Query: 253 SFVLIDPHLPDMPMVYASDAFLKLTG 278
+ L+D LP+ P+V A+ FL++TG
Sbjct: 19 ALTLVDMSLPEQPLVLANPPFLRMTG 44
>pdb|3HJI|A Chain A, 1.8 Angstrom Crystal Structure Of The I74v:i85v Variant
Of Vivid (Vvd).
pdb|3HJI|B Chain B, 1.8 Angstrom Crystal Structure Of The I74v:i85v Variant
Of Vivid (Vvd)
Length = 154
Score = 45.1 bits (105), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 23/31 (74%)
Query: 42 PIVFASRGFLKMSGFSRAEIIGRNGRMFQGP 72
P+V+AS FL M+G+S AE++GRN R Q P
Sbjct: 52 PVVYASEAFLYMTGYSNAEVLGRNCRFLQSP 82
Score = 32.0 bits (71), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 17/36 (47%), Positives = 22/36 (61%), Gaps = 2/36 (5%)
Query: 245 ISLGRIKQS--FVLIDPHLPDMPMVYASDAFLKLTG 278
+ LG + S VL D D P+VYAS+AFL +TG
Sbjct: 30 VELGPVDTSCALVLCDLKQKDTPVVYASEAFLYMTG 65
>pdb|2L1M|A Chain A, Solution Structure Of The Eag Domain Of The Herg (Kv11.1)
K+ Channel
Length = 150
Score = 44.3 bits (103), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 42/100 (42%), Gaps = 3/100 (3%)
Query: 30 SFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGR--NGRMFQGPRTNXXXXXXXXXXXX 87
F I + + +++ + GF ++ G+SRAE++ R GPRT
Sbjct: 28 KFIIANARVENCAVIYCNDGFCELCGYSRAEVMQRPCTCDFLHGPRTQRRAAAQIAQALL 87
Query: 88 XXXXXXVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFV 127
V + Y+KDG+ F L + V EDG F+
Sbjct: 88 GAEERKVEIAFYRKDGSCFLCLVDVVPV-KNEDGAVIMFI 126
>pdb|2L4R|A Chain A, Nmr Solution Structure Of The N-Terminal Pas Domain Of
Herg
Length = 135
Score = 44.3 bits (103), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 42/100 (42%), Gaps = 3/100 (3%)
Query: 30 SFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGR--NGRMFQGPRTNXXXXXXXXXXXX 87
F I + + +++ + GF ++ G+SRAE++ R GPRT
Sbjct: 28 KFIIANARVENCAVIYCNDGFCELCGYSRAEVMQRPCTCDFLHGPRTQRRAAAQIAQALL 87
Query: 88 XXXXXXVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFV 127
V + Y+KDG+ F L + V EDG F+
Sbjct: 88 GAEERKVEIAFYRKDGSCFLCLVDVVPV-KNEDGAVIMFI 126
>pdb|2L0W|A Chain A, Solution Nmr Structure Of The N-Terminal Pas Domain Of
Herg Potassium Channel
Length = 138
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 42/100 (42%), Gaps = 3/100 (3%)
Query: 30 SFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGR--NGRMFQGPRTNXXXXXXXXXXXX 87
F I + + +++ + GF ++ G+SRAE++ R GPRT
Sbjct: 31 KFIIANARVENCAVIYCNDGFCELCGYSRAEVMQRPCTCDFLHGPRTQRRAAAQIAQALL 90
Query: 88 XXXXXXVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFV 127
V + Y+KDG+ F L + V EDG F+
Sbjct: 91 GAEERKVEIAFYRKDGSCFLCLVDVVPV-KNEDGAVIMFI 129
>pdb|1BYW|A Chain A, Structure Of The N-Terminal Domain Of The Human-Erg
Potassium Channel
Length = 110
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/100 (25%), Positives = 41/100 (41%), Gaps = 3/100 (3%)
Query: 30 SFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGR--NGRMFQGPRTNXXXXXXXXXXXX 87
F I + + +++ + GF ++ G+SRAE++ R GP T
Sbjct: 3 KFIIANARVENCAVIYCNDGFCELCGYSRAEVMQRPCTCDFLHGPCTQRRAAAQIAQALL 62
Query: 88 XXXXXXVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFV 127
V + Y+KDG+ F L + V EDG F+
Sbjct: 63 GAEERKVEIAFYRKDGSCFLCLVDVVPV-KNEDGAVIMFI 101
>pdb|3SW1|A Chain A, Structure Of A Full-Length Bacterial Lov Protein
pdb|3SW1|B Chain B, Structure Of A Full-Length Bacterial Lov Protein
Length = 162
Score = 42.0 bits (97), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 25/107 (23%), Positives = 46/107 (42%), Gaps = 1/107 (0%)
Query: 24 LDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNXXXXXXXX 83
+D D + + +++ + F ++G+SR EI+ ++ R QG +
Sbjct: 31 VDASNDGIVVAEKEGDDTILIYVNAAFEYLTGYSRDEILYQDCRFLQGDDRDQLGRARIR 90
Query: 84 XXXXXXXXXXVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQ 130
L NY+KDG+ FW ++ V D R T+F+ +Q
Sbjct: 91 KAMAEGRPCREVLRNYRKDGSAFWNELSITPVKSDFDQR-TYFIGIQ 136
>pdb|4DNR|A Chain A, Crystal Structure Of The Cusba Heavy-metal Efflux Complex
From Escherichia Coli, E716f Mutant
Length = 1054
Score = 30.0 bits (66), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 38/76 (50%), Gaps = 6/76 (7%)
Query: 1 MDSQLGLIEQSFNNRYTLWVHEALDELPDSFT----ITDPSISGHPIVFASRGFLKMSGF 56
+D+ + +IE + + R W H+ D D+ T ITD S+ P +F S + +S
Sbjct: 411 VDAAIVMIENA-HKRLEEWQHQHPDATLDNKTRWQVITDASVEVGPALFISLLIITLSFI 469
Query: 57 SRAEIIGRNGRMFQGP 72
+ G+ GR+F GP
Sbjct: 470 PIFTLEGQEGRLF-GP 484
>pdb|2GJ3|A Chain A, Crystal Structure Of The Fad-Containing Pas Domain Of
The Protein Nifl From Azotobacter Vinelandii.
pdb|2GJ3|B Chain B, Crystal Structure Of The Fad-Containing Pas Domain Of
The Protein Nifl From Azotobacter Vinelandii
Length = 120
Score = 30.0 bits (66), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 12/44 (27%), Positives = 27/44 (61%), Gaps = 3/44 (6%)
Query: 22 EALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRN 65
+ ++ P + +ITD + I++A+R F ++G+ E++G+N
Sbjct: 9 QTVEHAPIAISITDLKAN---ILYANRAFRTITGYGSEEVLGKN 49
>pdb|4DOP|A Chain A, Crystal Structure Of The Cusba Heavy-Metal Efflux Complex
From Escherichia Coli, R Mutant
Length = 1054
Score = 30.0 bits (66), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 38/76 (50%), Gaps = 6/76 (7%)
Query: 1 MDSQLGLIEQSFNNRYTLWVHEALDELPDSFT----ITDPSISGHPIVFASRGFLKMSGF 56
+D+ + +IE + + R W H+ D D+ T ITD S+ P +F S + +S
Sbjct: 411 VDAAIVMIENA-HKRLEEWQHQHPDATLDNKTRWQVITDASVEVGPALFISLLIITLSFI 469
Query: 57 SRAEIIGRNGRMFQGP 72
+ G+ GR+F GP
Sbjct: 470 PIFTLEGQEGRLF-GP 484
>pdb|3T51|A Chain A, Crystal Structures Of The Pre-Extrusion And Extrusion
States Of The Cusba Adaptor-Transporter Complex
pdb|3T53|A Chain A, Crystal Structures Of The Extrusion State Of The Cusba
Adaptor- Transporter Complex
pdb|3T56|A Chain A, Crystal Structure Of The Pre-Extrusion State Of The Cusba
Adaptor- Transporter Complex
Length = 1054
Score = 30.0 bits (66), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 38/76 (50%), Gaps = 6/76 (7%)
Query: 1 MDSQLGLIEQSFNNRYTLWVHEALDELPDSFT----ITDPSISGHPIVFASRGFLKMSGF 56
+D+ + +IE + + R W H+ D D+ T ITD S+ P +F S + +S
Sbjct: 411 VDAAIVMIENA-HKRLEEWQHQHPDATLDNKTRWQVITDASVEVGPALFISLLIITLSFI 469
Query: 57 SRAEIIGRNGRMFQGP 72
+ G+ GR+F GP
Sbjct: 470 PIFTLEGQEGRLF-GP 484
>pdb|3NE5|A Chain A, Crystal Structure Of The Cusba Heavy-Metal Efflux Complex
From Escherichia Coli
Length = 1054
Score = 30.0 bits (66), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 38/76 (50%), Gaps = 6/76 (7%)
Query: 1 MDSQLGLIEQSFNNRYTLWVHEALDELPDSFT----ITDPSISGHPIVFASRGFLKMSGF 56
+D+ + +IE + + R W H+ D D+ T ITD S+ P +F S + +S
Sbjct: 411 VDAAIVMIENA-HKRLEEWQHQHPDATLDNKTRWQVITDASVEVGPALFISLLIITLSFI 469
Query: 57 SRAEIIGRNGRMFQGP 72
+ G+ GR+F GP
Sbjct: 470 PIFTLEGQEGRLF-GP 484
>pdb|3K07|A Chain A, Crystal Structure Of Cusa
pdb|3KSO|A Chain A, Structure And Mechanism Of The Heavy Metal Transporter
Cusa
pdb|3KSS|A Chain A, Structure And Mechanism Of The Heavy Metal Transporter
Cusa
pdb|3K0I|A Chain A, Crystal Structure Of Cu(I)cusa
Length = 1055
Score = 30.0 bits (66), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 38/76 (50%), Gaps = 6/76 (7%)
Query: 1 MDSQLGLIEQSFNNRYTLWVHEALDELPDSFT----ITDPSISGHPIVFASRGFLKMSGF 56
+D+ + +IE + + R W H+ D D+ T ITD S+ P +F S + +S
Sbjct: 412 VDAAIVMIENA-HKRLEEWQHQHPDATLDNKTRWQVITDASVEVGPALFISLLIITLSFI 470
Query: 57 SRAEIIGRNGRMFQGP 72
+ G+ GR+F GP
Sbjct: 471 PIFTLEGQEGRLF-GP 485
>pdb|3EWK|A Chain A, Structure Of The Redox Sensor Domain Of Methylococcus
Capsulatus (Bath) Mmos
Length = 227
Score = 29.3 bits (64), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 17/96 (17%), Positives = 40/96 (41%), Gaps = 1/96 (1%)
Query: 43 IVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNXXXXXXXXXXXXXXXXXXVNLLNYKKD 102
I++A+ F +S + R E++G++ R+ N +KD
Sbjct: 11 ILYANDNFCAVSRYGREELVGQDHRIVNSGYHGKAYIRDMWRTISRGNIWQGEFCNRRKD 70
Query: 103 GTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKH 138
GT +W+ + + G+ +++++ I ++K
Sbjct: 71 GTRYWVDSTIVPLMDNA-GKPRQYISIRRDITAQKE 105
>pdb|4DNT|A Chain A, Crystal Structure Of The Cusba Heavy-Metal Efflux Complex
From Escherichia Coli, Mutant
Length = 1054
Score = 27.7 bits (60), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 34/70 (48%), Gaps = 6/70 (8%)
Query: 7 LIEQSFNNRYTLWVHEALDELPDSFT----ITDPSISGHPIVFASRGFLKMSGFSRAEII 62
+IE + + R W H+ D D+ T ITD S+ P +F S + +S +
Sbjct: 417 MIENA-HKRLEEWQHQHPDATLDNKTRWQVITDASVEVGPALFISLLIITLSFIPIFTLE 475
Query: 63 GRNGRMFQGP 72
G+ GR+F GP
Sbjct: 476 GQEGRLF-GP 484
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.138 0.407
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,822,240
Number of Sequences: 62578
Number of extensions: 289864
Number of successful extensions: 556
Number of sequences better than 100.0: 53
Number of HSP's better than 100.0 without gapping: 43
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 459
Number of HSP's gapped (non-prelim): 87
length of query: 289
length of database: 14,973,337
effective HSP length: 98
effective length of query: 191
effective length of database: 8,840,693
effective search space: 1688572363
effective search space used: 1688572363
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (24.3 bits)