Query 022962
Match_columns 289
No_of_seqs 300 out of 2722
Neff 8.0
Searched_HMMs 46136
Date Fri Mar 29 07:26:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022962.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/022962hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK00107 gidB 16S rRNA methylt 100.0 2.1E-30 4.5E-35 220.7 21.4 186 66-270 2-187 (187)
2 PF02527 GidB: rRNA small subu 100.0 2E-30 4.3E-35 219.7 20.0 184 63-265 1-184 (184)
3 COG0357 GidB Predicted S-adeno 100.0 1.6E-30 3.4E-35 223.9 18.5 203 54-271 11-214 (215)
4 TIGR00138 gidB 16S rRNA methyl 100.0 6.6E-28 1.4E-32 204.6 18.2 179 68-267 2-180 (181)
5 PRK14966 unknown domain/N5-glu 99.9 2.5E-24 5.5E-29 201.4 19.2 205 38-251 163-404 (423)
6 PRK01544 bifunctional N5-gluta 99.9 9.3E-25 2E-29 211.9 16.5 215 54-283 46-319 (506)
7 TIGR00536 hemK_fam HemK family 99.9 1.7E-23 3.7E-28 189.7 17.8 188 54-250 45-267 (284)
8 COG2890 HemK Methylase of poly 99.9 1.3E-23 2.9E-28 189.6 16.3 199 55-269 44-275 (280)
9 TIGR03533 L3_gln_methyl protei 99.9 6.2E-22 1.3E-26 179.4 15.8 186 55-250 52-272 (284)
10 PRK09328 N5-glutamine S-adenos 99.9 5.2E-21 1.1E-25 172.1 17.8 186 55-250 41-260 (275)
11 PRK11805 N5-glutamine S-adenos 99.9 4.3E-21 9.3E-26 175.5 16.9 186 55-250 64-284 (307)
12 KOG2904 Predicted methyltransf 99.9 4.8E-21 1E-25 167.2 15.6 191 18-226 56-286 (328)
13 COG2226 UbiE Methylase involve 99.9 4.4E-21 9.6E-26 168.0 15.2 144 63-225 9-156 (238)
14 TIGR03534 RF_mod_PrmC protein- 99.9 6.4E-21 1.4E-25 169.0 15.3 188 54-251 20-240 (251)
15 COG4123 Predicted O-methyltran 99.8 2.3E-20 5E-25 163.7 15.1 146 121-271 44-212 (248)
16 TIGR03704 PrmC_rel_meth putati 99.8 2.2E-20 4.7E-25 166.4 13.6 191 37-249 12-237 (251)
17 PF01209 Ubie_methyltran: ubiE 99.8 1.9E-20 4.2E-25 164.8 11.0 146 61-225 3-153 (233)
18 TIGR02752 MenG_heptapren 2-hep 99.8 3.7E-18 7.9E-23 149.8 19.7 142 121-269 45-231 (231)
19 PLN02396 hexaprenyldihydroxybe 99.8 3.6E-18 7.8E-23 156.8 19.3 181 54-254 71-291 (322)
20 PLN02233 ubiquinone biosynthes 99.8 2E-17 4.3E-22 148.3 20.2 102 121-225 73-182 (261)
21 PF12847 Methyltransf_18: Meth 99.8 3.3E-18 7.1E-23 133.0 12.9 99 122-224 2-110 (112)
22 COG2242 CobL Precorrin-6B meth 99.8 1.9E-17 4.2E-22 138.6 17.0 127 120-251 33-160 (187)
23 PLN02672 methionine S-methyltr 99.8 3.4E-18 7.5E-23 176.0 13.4 255 17-289 5-340 (1082)
24 KOG1540 Ubiquinone biosynthesi 99.8 4.3E-17 9.3E-22 141.4 17.4 153 56-227 50-216 (296)
25 PRK08287 cobalt-precorrin-6Y C 99.8 4.4E-17 9.4E-22 138.8 16.6 126 121-253 31-157 (187)
26 PF13847 Methyltransf_31: Meth 99.8 2E-17 4.3E-22 136.2 13.8 105 121-227 3-112 (152)
27 COG2227 UbiG 2-polyprenyl-3-me 99.7 6.9E-18 1.5E-22 146.1 11.0 98 122-225 60-161 (243)
28 PF05175 MTS: Methyltransferas 99.7 1.7E-17 3.7E-22 139.4 12.2 102 122-227 32-142 (170)
29 COG2264 PrmA Ribosomal protein 99.7 1E-16 2.2E-21 144.2 14.8 138 119-269 160-299 (300)
30 TIGR00537 hemK_rel_arch HemK-r 99.7 3.3E-16 7.1E-21 132.5 16.3 122 122-254 20-167 (179)
31 PF06325 PrmA: Ribosomal prote 99.7 1.2E-16 2.6E-21 144.8 13.2 134 120-270 160-295 (295)
32 PRK04266 fibrillarin; Provisio 99.7 8.8E-16 1.9E-20 134.6 18.0 145 120-269 71-225 (226)
33 PRK00121 trmB tRNA (guanine-N( 99.7 1.7E-16 3.7E-21 136.9 13.3 125 121-248 40-177 (202)
34 PLN02336 phosphoethanolamine N 99.7 6.7E-17 1.4E-21 156.5 11.8 184 55-252 209-414 (475)
35 TIGR00452 methyltransferase, p 99.7 7.5E-16 1.6E-20 141.0 17.0 191 55-263 66-284 (314)
36 TIGR00091 tRNA (guanine-N(7)-) 99.7 2.8E-16 6.2E-21 134.7 13.1 125 122-248 17-154 (194)
37 PRK07402 precorrin-6B methylas 99.7 6.8E-16 1.5E-20 132.4 15.3 127 121-251 40-169 (196)
38 PLN02244 tocopherol O-methyltr 99.7 5.3E-16 1.1E-20 144.1 15.6 129 121-253 118-279 (340)
39 TIGR02469 CbiT precorrin-6Y C5 99.7 4.2E-16 9.2E-21 122.8 12.8 101 122-224 20-121 (124)
40 PRK00377 cbiT cobalt-precorrin 99.7 1.8E-15 3.9E-20 130.1 16.2 123 121-247 40-165 (198)
41 PRK11207 tellurite resistance 99.7 9.3E-16 2E-20 131.8 13.9 97 122-224 31-133 (197)
42 PRK11873 arsM arsenite S-adeno 99.7 1.7E-15 3.6E-20 136.4 16.1 130 119-251 75-229 (272)
43 PRK15068 tRNA mo(5)U34 methylt 99.7 3.2E-15 6.8E-20 137.8 18.2 179 55-254 67-276 (322)
44 PRK00517 prmA ribosomal protei 99.7 1.6E-15 3.5E-20 135.0 15.5 130 120-269 118-249 (250)
45 PRK11036 putative S-adenosyl-L 99.7 1.8E-15 3.9E-20 135.0 15.5 99 122-224 45-148 (255)
46 PF08241 Methyltransf_11: Meth 99.7 3.3E-16 7.2E-21 117.2 8.4 91 126-223 1-95 (95)
47 smart00828 PKS_MT Methyltransf 99.7 2.1E-15 4.6E-20 131.7 14.5 126 124-253 2-145 (224)
48 PLN02490 MPBQ/MSBQ methyltrans 99.6 1E-14 2.2E-19 134.6 18.6 126 122-253 114-257 (340)
49 PRK14968 putative methyltransf 99.6 9.9E-15 2.2E-19 123.5 16.4 123 121-252 23-173 (188)
50 PRK15451 tRNA cmo(5)U34 methyl 99.6 2E-15 4.4E-20 134.2 11.9 100 121-225 56-164 (247)
51 PTZ00098 phosphoethanolamine N 99.6 4.5E-15 9.9E-20 133.1 14.2 129 119-253 50-203 (263)
52 PLN03075 nicotianamine synthas 99.6 8.9E-15 1.9E-19 132.0 16.1 145 121-272 123-277 (296)
53 PRK14103 trans-aconitate 2-met 99.6 2.8E-15 6E-20 133.8 12.5 94 121-225 29-126 (255)
54 PRK15001 SAM-dependent 23S rib 99.6 2.8E-15 6.1E-20 140.2 12.7 100 122-225 229-340 (378)
55 PF02353 CMAS: Mycolic acid cy 99.6 7.3E-15 1.6E-19 132.3 14.6 99 119-224 60-165 (273)
56 COG2230 Cfa Cyclopropane fatty 99.6 4E-15 8.8E-20 132.9 12.0 100 118-224 69-175 (283)
57 COG2813 RsmC 16S RNA G1207 met 99.6 1.2E-14 2.6E-19 130.3 14.9 100 122-226 159-267 (300)
58 KOG1270 Methyltransferases [Co 99.6 1.7E-15 3.7E-20 132.3 9.0 95 122-224 90-194 (282)
59 PRK14967 putative methyltransf 99.6 1.6E-14 3.4E-19 126.5 14.9 122 121-251 36-183 (223)
60 PRK00216 ubiE ubiquinone/menaq 99.6 5.9E-14 1.3E-18 123.0 18.5 100 122-224 52-157 (239)
61 PF13659 Methyltransf_26: Meth 99.6 4.4E-15 9.6E-20 116.3 10.1 103 122-226 1-116 (117)
62 TIGR00477 tehB tellurite resis 99.6 5E-15 1.1E-19 127.1 11.2 96 122-224 31-132 (195)
63 PRK01683 trans-aconitate 2-met 99.6 1.1E-14 2.3E-19 130.0 13.5 96 121-225 31-130 (258)
64 PTZ00146 fibrillarin; Provisio 99.6 5.9E-14 1.3E-18 126.3 18.1 147 119-270 130-287 (293)
65 TIGR00080 pimt protein-L-isoas 99.6 7.9E-15 1.7E-19 127.7 12.2 103 120-227 76-179 (215)
66 PRK13942 protein-L-isoaspartat 99.6 1.1E-14 2.4E-19 126.6 12.7 104 119-227 74-178 (212)
67 PF13649 Methyltransf_25: Meth 99.6 3E-15 6.5E-20 114.7 8.0 91 125-219 1-101 (101)
68 TIGR00406 prmA ribosomal prote 99.6 2.5E-14 5.3E-19 130.0 14.9 123 120-251 158-282 (288)
69 PRK12335 tellurite resistance 99.6 1E-14 2.2E-19 132.4 11.8 96 122-224 121-222 (287)
70 PRK13944 protein-L-isoaspartat 99.6 2.3E-14 5.1E-19 123.9 13.4 101 121-226 72-174 (205)
71 TIGR00740 methyltransferase, p 99.6 1.7E-14 3.6E-19 127.5 12.2 99 122-225 54-161 (239)
72 PF08242 Methyltransf_12: Meth 99.6 7.6E-16 1.7E-20 117.4 2.7 95 126-221 1-99 (99)
73 PRK05785 hypothetical protein; 99.6 7.2E-14 1.6E-18 122.7 15.1 128 66-219 10-141 (226)
74 PRK08317 hypothetical protein; 99.6 1.2E-13 2.6E-18 120.7 16.2 101 121-225 19-124 (241)
75 TIGR01177 conserved hypothetic 99.6 4.3E-14 9.3E-19 130.8 14.0 125 118-253 179-316 (329)
76 TIGR01934 MenG_MenH_UbiE ubiqu 99.6 2E-13 4.3E-18 118.4 16.9 99 122-225 40-143 (223)
77 PRK09489 rsmC 16S ribosomal RN 99.6 2.9E-14 6.4E-19 132.2 12.0 99 122-226 197-304 (342)
78 PF03848 TehB: Tellurite resis 99.5 6.5E-14 1.4E-18 119.2 12.6 96 122-224 31-132 (192)
79 COG4106 Tam Trans-aconitate me 99.5 2.1E-14 4.5E-19 122.1 9.5 100 121-229 30-133 (257)
80 PRK13168 rumA 23S rRNA m(5)U19 99.5 2.2E-13 4.8E-18 130.9 17.7 144 120-269 296-442 (443)
81 PRK05134 bifunctional 3-demeth 99.5 6.5E-13 1.4E-17 116.7 19.1 173 58-253 3-206 (233)
82 PRK14121 tRNA (guanine-N(7)-)- 99.5 1.3E-13 2.8E-18 128.8 14.2 104 122-226 123-236 (390)
83 PRK06922 hypothetical protein; 99.5 7.8E-14 1.7E-18 136.7 12.7 104 121-226 418-538 (677)
84 PRK10258 biotin biosynthesis p 99.5 2.4E-13 5.3E-18 120.8 13.2 94 122-225 43-140 (251)
85 PRK14902 16S rRNA methyltransf 99.5 1.3E-12 2.8E-17 125.6 19.1 130 119-250 248-406 (444)
86 TIGR02716 C20_methyl_CrtF C-20 99.5 4.4E-13 9.4E-18 122.8 14.8 101 119-225 147-254 (306)
87 PRK04457 spermidine synthase; 99.5 5.4E-13 1.2E-17 119.6 14.9 119 122-243 67-194 (262)
88 PRK00312 pcm protein-L-isoaspa 99.5 4E-13 8.7E-18 116.6 12.8 100 120-226 77-176 (212)
89 TIGR02072 BioC biotin biosynth 99.5 1.7E-13 3.7E-18 119.9 10.6 97 122-225 35-135 (240)
90 PRK03522 rumB 23S rRNA methylu 99.5 9.3E-13 2E-17 121.2 15.4 138 121-269 173-314 (315)
91 PRK11188 rrmJ 23S rRNA methylt 99.5 5.3E-13 1.1E-17 115.8 12.9 93 121-224 51-164 (209)
92 PF13489 Methyltransf_23: Meth 99.5 6E-13 1.3E-17 109.3 12.2 91 121-226 22-116 (161)
93 PRK11783 rlmL 23S rRNA m(2)G24 99.5 5.2E-13 1.1E-17 134.8 14.3 126 121-252 538-680 (702)
94 PF08003 Methyltransf_9: Prote 99.5 8.8E-13 1.9E-17 118.3 14.1 189 55-264 60-279 (315)
95 COG2519 GCD14 tRNA(1-methylade 99.5 9.3E-13 2E-17 115.1 13.8 125 119-250 92-218 (256)
96 TIGR01983 UbiG ubiquinone bios 99.5 2.1E-12 4.5E-17 112.6 16.0 129 122-254 46-205 (224)
97 PRK14901 16S rRNA methyltransf 99.5 2.1E-12 4.6E-17 123.7 17.4 131 118-248 249-409 (434)
98 PRK10901 16S rRNA methyltransf 99.5 3.6E-12 7.8E-17 121.9 18.9 107 118-226 241-373 (427)
99 TIGR00446 nop2p NOL1/NOP2/sun 99.5 1.2E-12 2.6E-17 117.6 14.7 105 121-228 71-202 (264)
100 PRK14903 16S rRNA methyltransf 99.5 1.1E-12 2.3E-17 125.5 15.2 130 118-249 234-392 (431)
101 TIGR02021 BchM-ChlM magnesium 99.5 1.5E-12 3.3E-17 113.5 14.7 124 122-253 56-207 (219)
102 PRK15128 23S rRNA m(5)C1962 me 99.5 1.1E-12 2.5E-17 123.8 14.7 126 120-246 219-363 (396)
103 PF08704 GCD14: tRNA methyltra 99.5 3.1E-12 6.7E-17 113.2 16.4 132 118-252 37-171 (247)
104 TIGR00438 rrmJ cell division p 99.5 1.2E-12 2.6E-17 111.6 13.3 117 121-251 32-169 (188)
105 PRK00811 spermidine synthase; 99.5 3E-12 6.5E-17 116.1 16.4 145 122-269 77-237 (283)
106 PRK11088 rrmA 23S rRNA methylt 99.4 6.2E-13 1.3E-17 119.8 11.6 94 122-226 86-182 (272)
107 PLN02781 Probable caffeoyl-CoA 99.4 4.4E-13 9.6E-18 118.2 10.4 103 121-223 68-176 (234)
108 PF01135 PCMT: Protein-L-isoas 99.4 5.1E-13 1.1E-17 115.7 10.5 103 119-227 70-174 (209)
109 COG2518 Pcm Protein-L-isoaspar 99.4 7.5E-13 1.6E-17 113.2 11.0 104 118-230 69-174 (209)
110 PRK13943 protein-L-isoaspartat 99.4 1.2E-12 2.6E-17 120.3 13.1 101 121-226 80-181 (322)
111 KOG1271 Methyltransferases [Ge 99.4 4.1E-12 8.8E-17 105.5 14.7 124 122-251 68-204 (227)
112 PRK11705 cyclopropane fatty ac 99.4 8.3E-13 1.8E-17 124.5 11.6 96 119-224 165-266 (383)
113 PF05401 NodS: Nodulation prot 99.4 3.8E-12 8.1E-17 107.7 14.2 96 122-225 44-146 (201)
114 PHA03411 putative methyltransf 99.4 5.1E-12 1.1E-16 112.8 15.7 124 122-254 65-216 (279)
115 smart00138 MeTrc Methyltransfe 99.4 1.6E-12 3.5E-17 116.7 12.4 102 121-225 99-242 (264)
116 TIGR02085 meth_trns_rumB 23S r 99.4 4.4E-12 9.5E-17 119.3 15.8 138 121-268 233-373 (374)
117 PRK14904 16S rRNA methyltransf 99.4 4.1E-12 8.8E-17 122.2 15.0 125 119-247 248-401 (445)
118 KOG4300 Predicted methyltransf 99.4 9E-13 2E-17 111.4 9.1 101 122-225 77-182 (252)
119 PLN02585 magnesium protoporphy 99.4 2.1E-11 4.5E-16 111.9 18.1 120 122-251 145-298 (315)
120 TIGR03587 Pse_Me-ase pseudamin 99.4 3.5E-12 7.6E-17 110.2 12.1 92 121-223 43-140 (204)
121 TIGR03840 TMPT_Se_Te thiopurin 99.4 2.3E-12 5E-17 112.1 10.5 99 122-224 35-151 (213)
122 PF02390 Methyltransf_4: Putat 99.4 7.1E-12 1.5E-16 107.6 13.3 124 123-248 19-156 (195)
123 TIGR00479 rumA 23S rRNA (uraci 99.4 6.7E-12 1.5E-16 120.2 14.5 129 120-254 291-422 (431)
124 PRK10909 rsmD 16S rRNA m(2)G96 99.4 5.3E-12 1.2E-16 108.6 12.1 103 122-227 54-161 (199)
125 PRK13255 thiopurine S-methyltr 99.4 3E-11 6.4E-16 105.5 16.8 98 122-223 38-153 (218)
126 PHA03412 putative methyltransf 99.4 7.6E-12 1.6E-16 109.3 12.0 92 122-223 50-160 (241)
127 PRK11727 23S rRNA mA1618 methy 99.4 2.3E-11 5.1E-16 111.5 15.7 80 121-200 114-197 (321)
128 cd02440 AdoMet_MTases S-adenos 99.4 7.8E-12 1.7E-16 93.4 10.5 98 124-224 1-103 (107)
129 COG2263 Predicted RNA methylas 99.4 6.8E-11 1.5E-15 99.1 17.0 121 122-257 46-173 (198)
130 COG4122 Predicted O-methyltran 99.4 4.3E-12 9.4E-17 109.9 10.3 102 121-223 59-164 (219)
131 PRK07580 Mg-protoporphyrin IX 99.3 2.1E-11 4.6E-16 106.6 14.0 124 121-253 63-215 (230)
132 TIGR00563 rsmB ribosomal RNA s 99.3 1.8E-11 4E-16 117.0 14.6 108 118-226 235-369 (426)
133 PRK03612 spermidine synthase; 99.3 1.6E-11 3.4E-16 120.2 13.8 145 121-270 297-460 (521)
134 PF01596 Methyltransf_3: O-met 99.3 4.5E-12 9.7E-17 109.5 8.7 103 122-224 46-154 (205)
135 PRK05031 tRNA (uracil-5-)-meth 99.3 3.4E-11 7.5E-16 112.8 15.3 138 123-269 208-361 (362)
136 PLN02476 O-methyltransferase 99.3 9.5E-12 2.1E-16 111.8 10.6 103 121-223 118-226 (278)
137 PRK01581 speE spermidine synth 99.3 5.5E-11 1.2E-15 110.0 15.8 148 120-270 149-314 (374)
138 PLN02366 spermidine synthase 99.3 9.4E-11 2E-15 107.3 16.6 149 121-270 91-254 (308)
139 PLN02336 phosphoethanolamine N 99.3 1.9E-11 4.1E-16 118.5 12.7 99 122-225 38-142 (475)
140 TIGR00417 speE spermidine synt 99.3 8.2E-11 1.8E-15 106.0 15.8 145 122-269 73-232 (270)
141 PRK06202 hypothetical protein; 99.3 1.8E-11 3.9E-16 107.7 10.4 89 122-216 61-159 (232)
142 smart00650 rADc Ribosomal RNA 99.3 2.7E-10 5.9E-15 95.4 16.3 98 121-225 13-113 (169)
143 KOG1541 Predicted protein carb 99.3 1.5E-10 3.2E-15 99.0 14.2 115 122-246 51-181 (270)
144 TIGR02143 trmA_only tRNA (urac 99.3 1.9E-10 4.1E-15 107.4 16.1 138 123-269 199-352 (353)
145 PRK04338 N(2),N(2)-dimethylgua 99.2 4.6E-11 9.9E-16 112.5 10.2 100 122-224 58-157 (382)
146 TIGR03438 probable methyltrans 99.2 8.4E-11 1.8E-15 107.5 11.5 103 122-224 64-176 (301)
147 KOG1499 Protein arginine N-met 99.2 5.7E-11 1.2E-15 108.2 10.1 97 121-222 60-164 (346)
148 KOG3191 Predicted N6-DNA-methy 99.2 4.8E-10 1E-14 93.2 13.9 136 122-269 44-206 (209)
149 PF02475 Met_10: Met-10+ like- 99.2 8.4E-11 1.8E-15 101.0 9.6 100 119-222 99-199 (200)
150 TIGR00095 RNA methyltransferas 99.2 1.8E-10 3.9E-15 98.4 11.5 105 122-227 50-161 (189)
151 TIGR02081 metW methionine bios 99.2 3.2E-10 7E-15 97.0 12.5 121 121-254 13-169 (194)
152 PLN02589 caffeoyl-CoA O-methyl 99.2 1.2E-10 2.6E-15 103.2 9.8 102 122-223 80-188 (247)
153 COG4976 Predicted methyltransf 99.2 2.2E-11 4.9E-16 104.5 4.2 141 122-270 126-286 (287)
154 COG0220 Predicted S-adenosylme 99.1 2.7E-10 5.9E-15 99.7 10.2 104 123-226 50-165 (227)
155 PF05185 PRMT5: PRMT5 arginine 99.1 5.1E-10 1.1E-14 107.3 11.8 97 122-222 187-294 (448)
156 PF07021 MetW: Methionine bios 99.1 3.5E-10 7.7E-15 95.5 9.3 124 119-254 11-169 (193)
157 PF10294 Methyltransf_16: Puta 99.1 1.8E-10 4E-15 97.0 7.3 105 121-226 45-157 (173)
158 PRK13256 thiopurine S-methyltr 99.1 1.1E-09 2.4E-14 95.7 12.1 102 122-225 44-163 (226)
159 PF03602 Cons_hypoth95: Conser 99.1 6E-10 1.3E-14 94.7 9.3 106 122-228 43-156 (183)
160 PF05724 TPMT: Thiopurine S-me 99.1 6E-09 1.3E-13 91.0 15.4 129 121-254 37-192 (218)
161 PRK11933 yebU rRNA (cytosine-C 99.1 3E-09 6.4E-14 102.5 14.0 105 120-226 112-243 (470)
162 PLN02823 spermine synthase 99.0 7.3E-09 1.6E-13 95.9 15.6 146 122-270 104-268 (336)
163 KOG2899 Predicted methyltransf 99.0 1.5E-09 3.1E-14 94.2 9.9 100 121-225 58-209 (288)
164 PF01170 UPF0020: Putative RNA 99.0 3.1E-09 6.6E-14 90.1 11.6 122 120-251 27-170 (179)
165 PF10672 Methyltrans_SAM: S-ad 99.0 2.4E-09 5.2E-14 96.8 11.6 105 121-226 123-239 (286)
166 PRK00274 ksgA 16S ribosomal RN 99.0 9.3E-09 2E-13 92.8 15.1 72 121-200 42-113 (272)
167 COG1092 Predicted SAM-dependen 99.0 2.7E-09 5.9E-14 100.1 12.0 128 122-250 218-364 (393)
168 KOG1500 Protein arginine N-met 99.0 2.2E-09 4.9E-14 96.9 10.6 99 122-226 178-283 (517)
169 PRK14896 ksgA 16S ribosomal RN 99.0 1.7E-09 3.6E-14 96.9 9.4 71 121-200 29-99 (258)
170 PF05958 tRNA_U5-meth_tr: tRNA 99.0 8.3E-09 1.8E-13 96.4 14.4 139 123-270 198-352 (352)
171 PF06080 DUF938: Protein of un 99.0 8E-09 1.7E-13 88.4 12.2 141 124-269 28-204 (204)
172 TIGR00308 TRM1 tRNA(guanine-26 99.0 2.2E-09 4.7E-14 100.7 9.4 100 123-224 46-146 (374)
173 PRK01544 bifunctional N5-gluta 98.9 9E-09 2E-13 100.5 12.9 125 121-248 347-484 (506)
174 COG2265 TrmA SAM-dependent met 98.9 9.5E-09 2.1E-13 98.1 12.8 128 121-254 293-422 (432)
175 COG0742 N6-adenine-specific me 98.9 1.4E-08 3E-13 85.8 12.1 106 122-228 44-157 (187)
176 TIGR00478 tly hemolysin TlyA f 98.9 6.4E-09 1.4E-13 91.2 10.5 120 121-251 75-216 (228)
177 PTZ00338 dimethyladenosine tra 98.9 3.6E-09 7.7E-14 96.4 9.2 73 121-200 36-109 (294)
178 COG1041 Predicted DNA modifica 98.9 3E-08 6.4E-13 90.9 14.9 137 120-269 196-346 (347)
179 COG2520 Predicted methyltransf 98.9 3.5E-08 7.6E-13 90.9 15.4 103 119-225 186-289 (341)
180 KOG3420 Predicted RNA methylas 98.9 1.2E-09 2.5E-14 87.7 4.9 74 122-200 49-122 (185)
181 PF00891 Methyltransf_2: O-met 98.9 7.3E-09 1.6E-13 91.6 10.5 92 121-225 100-199 (241)
182 PF05148 Methyltransf_8: Hypot 98.9 2.7E-08 5.8E-13 85.1 13.3 126 121-272 72-200 (219)
183 KOG3045 Predicted RNA methylas 98.9 4.9E-08 1.1E-12 85.5 15.2 129 121-279 180-311 (325)
184 KOG3010 Methyltransferase [Gen 98.9 1E-09 2.2E-14 95.1 4.6 95 124-223 36-135 (261)
185 PLN02232 ubiquinone biosynthes 98.9 7.2E-09 1.6E-13 86.1 9.5 74 149-225 1-81 (160)
186 PRK00050 16S rRNA m(4)C1402 me 98.9 1.1E-08 2.4E-13 92.9 10.5 77 121-199 19-97 (296)
187 TIGR00755 ksgA dimethyladenosi 98.9 5.2E-08 1.1E-12 86.9 14.2 71 121-200 29-102 (253)
188 COG2521 Predicted archaeal met 98.9 4.3E-09 9.3E-14 90.9 6.4 130 119-250 132-275 (287)
189 COG0144 Sun tRNA and rRNA cyto 98.8 6.6E-08 1.4E-12 90.4 13.9 110 118-227 153-290 (355)
190 KOG2361 Predicted methyltransf 98.8 6.6E-09 1.4E-13 90.2 5.7 101 123-224 73-182 (264)
191 PF09445 Methyltransf_15: RNA 98.8 1.1E-08 2.4E-13 84.9 6.9 74 124-199 2-76 (163)
192 PF01564 Spermine_synth: Sperm 98.8 2.2E-07 4.7E-12 82.7 15.3 137 122-261 77-228 (246)
193 COG4076 Predicted RNA methylas 98.8 6.1E-09 1.3E-13 87.1 5.0 94 122-222 33-132 (252)
194 COG0421 SpeE Spermidine syntha 98.8 1.4E-07 3.1E-12 85.1 14.0 144 122-268 77-235 (282)
195 PF01269 Fibrillarin: Fibrilla 98.8 7.5E-07 1.6E-11 77.0 17.7 145 119-268 71-225 (229)
196 PF05219 DREV: DREV methyltran 98.8 1.3E-07 2.7E-12 83.5 12.8 122 122-257 95-245 (265)
197 KOG1661 Protein-L-isoaspartate 98.8 2.8E-08 6.1E-13 84.6 8.4 104 119-227 80-195 (237)
198 PF04816 DUF633: Family of unk 98.7 6.5E-07 1.4E-11 77.3 16.1 123 125-254 1-126 (205)
199 KOG1663 O-methyltransferase [S 98.7 6.7E-08 1.5E-12 83.5 9.8 103 121-223 73-181 (237)
200 PF12147 Methyltransf_20: Puta 98.7 1.5E-07 3.4E-12 84.1 12.2 103 121-223 135-247 (311)
201 PF03291 Pox_MCEL: mRNA cappin 98.7 7.3E-08 1.6E-12 89.1 9.3 105 121-226 62-187 (331)
202 PRK11783 rlmL 23S rRNA m(2)G24 98.7 1.7E-07 3.6E-12 95.1 12.2 108 120-228 189-350 (702)
203 PF05891 Methyltransf_PK: AdoM 98.7 7.1E-08 1.5E-12 83.1 7.8 126 122-251 56-200 (218)
204 PRK04148 hypothetical protein; 98.6 1.2E-07 2.6E-12 76.1 8.0 83 122-215 17-101 (134)
205 PRK00536 speE spermidine synth 98.6 8E-07 1.7E-11 79.5 14.0 139 121-270 72-216 (262)
206 KOG2915 tRNA(1-methyladenosine 98.6 1.5E-06 3.3E-11 76.8 14.5 131 119-253 103-236 (314)
207 PF01189 Nol1_Nop2_Fmu: NOL1/N 98.6 2.2E-07 4.8E-12 84.3 9.2 106 120-226 84-220 (283)
208 TIGR01444 fkbM_fam methyltrans 98.6 2.1E-07 4.5E-12 75.3 8.0 59 124-182 1-59 (143)
209 PF01861 DUF43: Protein of unk 98.6 7.2E-06 1.6E-10 71.8 17.4 128 122-252 45-178 (243)
210 KOG2187 tRNA uracil-5-methyltr 98.5 7.3E-08 1.6E-12 91.8 4.0 65 118-184 380-444 (534)
211 COG1889 NOP1 Fibrillarin-like 98.5 8.4E-06 1.8E-10 69.3 15.4 147 119-270 74-229 (231)
212 TIGR02987 met_A_Alw26 type II 98.5 2.3E-06 5E-11 84.1 14.0 79 122-200 32-120 (524)
213 KOG1975 mRNA cap methyltransfe 98.5 5.4E-07 1.2E-11 81.4 8.3 129 79-225 92-237 (389)
214 PF01728 FtsJ: FtsJ-like methy 98.5 2.3E-07 5E-12 78.4 5.5 93 122-225 24-139 (181)
215 PF01739 CheR: CheR methyltran 98.4 5.4E-07 1.2E-11 77.3 7.1 100 122-224 32-174 (196)
216 COG0030 KsgA Dimethyladenosine 98.4 1.1E-06 2.4E-11 78.1 8.7 73 121-199 30-102 (259)
217 PF02384 N6_Mtase: N-6 DNA Met 98.4 3.6E-06 7.8E-11 77.2 12.2 150 121-272 46-235 (311)
218 PRK10611 chemotaxis methyltran 98.4 6.1E-07 1.3E-11 81.3 6.3 101 122-224 116-261 (287)
219 PF03059 NAS: Nicotianamine sy 98.4 1.7E-06 3.8E-11 77.7 9.1 143 122-271 121-273 (276)
220 COG0116 Predicted N6-adenine-s 98.4 2.9E-06 6.3E-11 79.0 10.6 105 118-225 188-344 (381)
221 PF08123 DOT1: Histone methyla 98.4 9.6E-07 2.1E-11 76.3 6.9 104 121-224 42-157 (205)
222 KOG0820 Ribosomal RNA adenine 98.3 1.2E-06 2.6E-11 77.5 7.0 74 119-199 56-130 (315)
223 COG3963 Phospholipid N-methylt 98.3 3E-06 6.6E-11 69.9 8.8 102 118-224 45-155 (194)
224 COG3897 Predicted methyltransf 98.3 1.3E-06 2.9E-11 73.7 6.5 97 121-226 79-179 (218)
225 PF05971 Methyltransf_10: Prot 98.3 2.6E-06 5.6E-11 77.3 8.8 77 122-199 103-184 (299)
226 PF13679 Methyltransf_32: Meth 98.3 3E-06 6.4E-11 68.9 7.6 75 121-199 25-106 (141)
227 COG0293 FtsJ 23S rRNA methylas 98.3 1.7E-05 3.6E-10 68.1 12.2 105 120-235 44-171 (205)
228 PF06962 rRNA_methylase: Putat 98.2 9.8E-06 2.1E-10 65.5 9.8 120 147-269 1-140 (140)
229 PF01234 NNMT_PNMT_TEMT: NNMT/ 98.2 1.7E-05 3.6E-10 70.7 12.3 131 121-252 56-239 (256)
230 PRK11760 putative 23S rRNA C24 98.2 5.4E-05 1.2E-09 69.7 15.7 115 119-245 209-332 (357)
231 KOG3201 Uncharacterized conser 98.2 8.9E-07 1.9E-11 72.6 3.4 129 122-252 30-166 (201)
232 KOG2940 Predicted methyltransf 98.2 3.2E-06 7E-11 73.1 6.7 105 123-233 74-183 (325)
233 COG0500 SmtA SAM-dependent met 98.2 2.4E-05 5.2E-10 61.1 11.0 99 125-226 52-156 (257)
234 COG2384 Predicted SAM-dependen 98.2 7.9E-05 1.7E-09 64.3 14.7 146 122-277 17-165 (226)
235 COG1352 CheR Methylase of chem 98.2 1.3E-05 2.8E-10 71.9 10.3 99 122-223 97-239 (268)
236 PF00398 RrnaAD: Ribosomal RNA 98.1 0.00013 2.8E-09 65.5 15.5 75 121-199 30-104 (262)
237 PF09243 Rsm22: Mitochondrial 98.1 3.9E-05 8.5E-10 69.3 11.6 124 122-251 34-167 (274)
238 TIGR00006 S-adenosyl-methyltra 98.1 3.7E-05 8E-10 70.2 11.0 78 121-199 20-99 (305)
239 KOG1122 tRNA and rRNA cytosine 98.1 5.6E-05 1.2E-09 70.7 12.1 108 118-226 238-372 (460)
240 PF13578 Methyltransf_24: Meth 98.1 2.4E-06 5.3E-11 65.6 2.7 96 126-223 1-103 (106)
241 KOG3115 Methyltransferase-like 98.1 2.6E-05 5.6E-10 66.4 8.9 105 122-226 61-184 (249)
242 COG4262 Predicted spermidine s 98.0 0.00011 2.4E-09 67.8 12.6 152 118-274 286-456 (508)
243 PF07942 N2227: N2227-like pro 98.0 9.8E-05 2.1E-09 66.3 12.0 129 121-252 56-242 (270)
244 KOG1709 Guanidinoacetate methy 98.0 4.5E-05 9.8E-10 65.5 8.7 107 121-230 101-211 (271)
245 KOG2730 Methylase [General fun 97.9 5.1E-06 1.1E-10 71.4 2.8 76 122-199 95-172 (263)
246 KOG4589 Cell division protein 97.9 0.00014 3.1E-09 61.2 10.5 94 120-224 68-183 (232)
247 KOG1269 SAM-dependent methyltr 97.9 2.4E-05 5.3E-10 73.1 6.6 103 118-224 107-214 (364)
248 COG1189 Predicted rRNA methyla 97.9 0.00042 9.1E-09 60.6 13.4 140 121-267 79-239 (245)
249 PF02005 TRM: N2,N2-dimethylgu 97.9 7.3E-05 1.6E-09 70.5 9.0 102 122-225 50-154 (377)
250 PRK10742 putative methyltransf 97.8 8.4E-05 1.8E-09 65.7 8.3 77 120-200 85-172 (250)
251 COG1867 TRM1 N2,N2-dimethylgua 97.8 7.1E-05 1.5E-09 69.2 7.9 101 122-224 53-153 (380)
252 PF11968 DUF3321: Putative met 97.8 0.00027 6E-09 61.0 11.0 127 122-272 52-195 (219)
253 TIGR03439 methyl_EasF probable 97.8 0.00036 7.8E-09 64.3 12.0 104 121-224 76-196 (319)
254 PF03141 Methyltransf_29: Puta 97.7 3.3E-05 7.2E-10 74.0 4.6 92 123-226 119-220 (506)
255 COG1568 Predicted methyltransf 97.7 0.00034 7.3E-09 62.3 10.4 128 122-251 153-287 (354)
256 KOG1331 Predicted methyltransf 97.6 0.00015 3.3E-09 64.8 6.3 92 121-225 45-143 (293)
257 KOG2198 tRNA cytosine-5-methyl 97.6 0.0013 2.8E-08 60.9 12.2 108 118-225 152-296 (375)
258 PF07091 FmrO: Ribosomal RNA m 97.5 0.0004 8.6E-09 61.3 7.5 74 121-199 105-178 (251)
259 KOG1501 Arginine N-methyltrans 97.5 0.00032 6.8E-09 66.1 6.9 61 123-184 68-129 (636)
260 PF01795 Methyltransf_5: MraW 97.4 0.00024 5.1E-09 65.0 5.4 78 121-199 20-100 (310)
261 KOG2798 Putative trehalase [Ca 97.4 0.003 6.4E-08 57.4 11.9 183 57-254 98-339 (369)
262 KOG3987 Uncharacterized conser 97.3 0.00012 2.6E-09 62.6 1.9 117 121-251 112-259 (288)
263 COG4798 Predicted methyltransf 97.3 0.0048 1E-07 52.5 11.1 129 119-251 46-204 (238)
264 COG0275 Predicted S-adenosylme 97.3 0.0039 8.5E-08 56.4 11.3 78 121-199 23-103 (314)
265 cd00315 Cyt_C5_DNA_methylase C 97.2 0.01 2.2E-07 53.6 14.0 116 124-249 2-140 (275)
266 KOG1596 Fibrillarin and relate 97.2 0.0072 1.6E-07 53.0 11.5 145 119-268 154-308 (317)
267 KOG3178 Hydroxyindole-O-methyl 97.1 0.0022 4.7E-08 59.1 8.3 93 122-226 178-276 (342)
268 COG1064 AdhP Zn-dependent alco 97.1 0.0027 6E-08 58.7 9.0 94 118-224 163-258 (339)
269 KOG2793 Putative N2,N2-dimethy 97.1 0.014 3E-07 51.8 12.8 102 122-225 87-199 (248)
270 KOG1253 tRNA methyltransferase 97.1 0.00033 7.2E-09 66.9 2.5 105 120-224 108-215 (525)
271 PF03141 Methyltransf_29: Puta 97.0 0.0023 5.1E-08 61.5 7.6 130 123-269 367-506 (506)
272 COG0286 HsdM Type I restrictio 97.0 0.019 4.1E-07 56.2 14.1 105 121-225 186-326 (489)
273 PHA01634 hypothetical protein 97.0 0.0044 9.5E-08 49.1 7.7 71 122-199 29-99 (156)
274 PRK01747 mnmC bifunctional tRN 96.8 0.011 2.4E-07 60.0 11.1 135 122-269 58-239 (662)
275 PF04672 Methyltransf_19: S-ad 96.8 0.029 6.4E-07 50.2 12.5 122 123-244 70-211 (267)
276 COG5459 Predicted rRNA methyla 96.8 0.0037 8E-08 57.6 6.8 119 122-244 114-246 (484)
277 COG3129 Predicted SAM-dependen 96.6 0.0036 7.8E-08 54.6 5.2 80 121-200 78-161 (292)
278 PF10354 DUF2431: Domain of un 96.6 0.014 3.1E-07 48.7 8.4 127 128-254 3-154 (166)
279 cd08283 FDH_like_1 Glutathione 96.3 0.014 3.1E-07 55.0 8.0 101 120-224 183-305 (386)
280 PF04989 CmcI: Cephalosporin h 96.3 0.015 3.3E-07 50.1 7.1 102 122-225 33-147 (206)
281 PF11599 AviRa: RRNA methyltra 96.1 0.012 2.5E-07 50.9 5.2 103 122-225 52-213 (246)
282 COG1063 Tdh Threonine dehydrog 96.1 0.0099 2.1E-07 55.6 5.3 96 122-224 169-268 (350)
283 KOG2920 Predicted methyltransf 96.1 0.0039 8.5E-08 55.9 2.4 100 121-223 116-232 (282)
284 KOG2352 Predicted spermine/spe 96.0 0.042 9.2E-07 52.8 9.4 97 124-225 51-161 (482)
285 KOG0024 Sorbitol dehydrogenase 95.8 0.038 8.2E-07 50.7 7.8 102 117-224 165-272 (354)
286 KOG4058 Uncharacterized conser 95.7 0.044 9.5E-07 44.7 6.8 98 122-225 73-172 (199)
287 KOG1099 SAM-dependent methyltr 95.6 0.023 5.1E-07 49.6 5.2 91 122-223 42-161 (294)
288 PF00145 DNA_methylase: C-5 cy 95.5 0.19 4.1E-06 45.7 11.5 114 124-248 2-138 (335)
289 KOG2078 tRNA modification enzy 95.3 0.0096 2.1E-07 56.2 2.2 66 117-184 245-312 (495)
290 PF04445 SAM_MT: Putative SAM- 95.3 0.083 1.8E-06 46.5 7.7 74 123-200 77-159 (234)
291 cd08254 hydroxyacyl_CoA_DH 6-h 95.1 0.11 2.3E-06 47.4 8.3 97 119-224 163-262 (338)
292 KOG2912 Predicted DNA methylas 95.1 0.025 5.5E-07 51.6 3.9 74 126-199 107-185 (419)
293 PF07279 DUF1442: Protein of u 95.0 0.35 7.5E-06 41.9 10.6 100 122-226 42-149 (218)
294 TIGR00675 dcm DNA-methyltransf 95.0 0.39 8.4E-06 44.3 11.7 114 125-249 1-137 (315)
295 KOG1227 Putative methyltransfe 95.0 0.011 2.4E-07 53.4 1.4 98 121-226 194-297 (351)
296 KOG2671 Putative RNA methylase 94.9 0.043 9.3E-07 50.6 4.9 105 118-226 205-355 (421)
297 PRK09880 L-idonate 5-dehydroge 94.8 0.15 3.3E-06 47.1 8.6 95 121-224 169-265 (343)
298 KOG1562 Spermidine synthase [A 94.7 0.67 1.5E-05 42.1 11.8 149 117-267 117-279 (337)
299 PF05430 Methyltransf_30: S-ad 94.6 0.086 1.9E-06 41.9 5.5 85 172-269 32-123 (124)
300 COG0270 Dcm Site-specific DNA 94.5 0.44 9.4E-06 44.2 10.8 116 122-246 3-141 (328)
301 PF00107 ADH_zinc_N: Zinc-bind 94.4 0.04 8.6E-07 43.2 3.2 86 131-225 1-89 (130)
302 cd08237 ribitol-5-phosphate_DH 94.4 0.27 5.9E-06 45.4 9.2 89 120-224 162-255 (341)
303 PRK13699 putative methylase; P 94.3 0.15 3.2E-06 44.8 6.8 76 174-253 3-97 (227)
304 KOG0822 Protein kinase inhibit 94.1 0.14 3E-06 49.9 6.7 97 122-222 368-475 (649)
305 PRK09424 pntA NAD(P) transhydr 94.1 0.28 6E-06 48.2 8.9 99 121-224 164-284 (509)
306 cd08230 glucose_DH Glucose deh 94.1 0.25 5.5E-06 45.8 8.4 93 121-224 172-268 (355)
307 PF02153 PDH: Prephenate dehyd 94.0 0.92 2E-05 40.5 11.6 105 135-254 1-106 (258)
308 PF07757 AdoMet_MTase: Predict 93.9 0.045 9.7E-07 42.2 2.4 31 122-154 59-89 (112)
309 TIGR03451 mycoS_dep_FDH mycoth 93.8 0.25 5.4E-06 45.9 7.9 99 119-224 174-275 (358)
310 PF06859 Bin3: Bicoid-interact 93.8 0.042 9.2E-07 42.5 2.1 34 192-225 1-44 (110)
311 KOG2651 rRNA adenine N-6-methy 93.6 0.15 3.3E-06 47.7 5.7 44 120-164 152-195 (476)
312 PRK11524 putative methyltransf 93.6 0.16 3.4E-06 46.1 5.8 75 172-251 8-102 (284)
313 PF01555 N6_N4_Mtase: DNA meth 93.5 0.15 3.3E-06 43.6 5.4 42 120-163 190-231 (231)
314 KOG2352 Predicted spermine/spe 93.4 0.081 1.8E-06 51.0 3.8 105 120-224 294-415 (482)
315 PF05711 TylF: Macrocin-O-meth 93.0 1.2 2.6E-05 39.7 10.3 128 122-253 75-238 (248)
316 PRK11524 putative methyltransf 92.9 0.25 5.5E-06 44.7 6.1 46 120-167 207-252 (284)
317 PF03446 NAD_binding_2: NAD bi 92.5 1.2 2.6E-05 36.7 9.2 110 125-251 4-119 (163)
318 TIGR02822 adh_fam_2 zinc-bindi 92.5 1.2 2.6E-05 40.9 10.1 89 120-224 164-253 (329)
319 cd05188 MDR Medium chain reduc 92.4 0.38 8.3E-06 41.8 6.4 97 120-225 133-232 (271)
320 PF02636 Methyltransf_28: Puta 92.3 0.31 6.7E-06 43.3 5.7 46 122-167 19-72 (252)
321 PRK13699 putative methylase; P 92.0 0.44 9.5E-06 41.8 6.3 48 120-169 162-209 (227)
322 COG2933 Predicted SAM-dependen 91.7 0.4 8.7E-06 42.9 5.5 89 118-218 208-296 (358)
323 PF02254 TrkA_N: TrkA-N domain 91.6 2.8 6E-05 32.0 9.8 105 130-247 4-112 (116)
324 PF05050 Methyltransf_21: Meth 91.6 0.42 9.1E-06 38.7 5.4 54 127-180 1-61 (167)
325 cd05278 FDH_like Formaldehyde 91.3 0.83 1.8E-05 41.8 7.7 99 119-224 165-266 (347)
326 PRK05786 fabG 3-ketoacyl-(acyl 91.3 3.4 7.4E-05 35.4 11.1 101 122-225 5-135 (238)
327 cd08281 liver_ADH_like1 Zinc-d 91.2 0.74 1.6E-05 43.0 7.3 98 119-224 189-289 (371)
328 cd08232 idonate-5-DH L-idonate 91.0 1.7 3.8E-05 39.6 9.4 93 121-224 165-261 (339)
329 PRK10458 DNA cytosine methylas 90.5 18 0.00039 35.3 16.7 60 122-184 88-147 (467)
330 PRK07806 short chain dehydroge 90.2 2.4 5.2E-05 36.7 9.2 103 122-226 6-135 (248)
331 PF05206 TRM13: Methyltransfer 90.2 0.7 1.5E-05 41.4 5.8 64 121-185 18-87 (259)
332 cd08285 NADP_ADH NADP(H)-depen 89.9 1.3 2.8E-05 40.8 7.6 99 119-224 164-265 (351)
333 TIGR03366 HpnZ_proposed putati 89.9 1.5 3.2E-05 39.3 7.8 96 121-225 120-218 (280)
334 TIGR03201 dearomat_had 6-hydro 89.8 1.6 3.5E-05 40.3 8.2 98 120-224 165-271 (349)
335 TIGR01761 thiaz-red thiazoliny 89.7 3.1 6.8E-05 38.8 10.0 113 122-249 3-120 (343)
336 PF02558 ApbA: Ketopantoate re 89.6 1.5 3.3E-05 35.2 7.0 89 131-227 5-103 (151)
337 cd08255 2-desacetyl-2-hydroxye 89.6 2.4 5.2E-05 37.4 8.9 91 121-225 97-190 (277)
338 PTZ00357 methyltransferase; Pr 89.5 1 2.2E-05 45.6 6.7 98 123-220 702-830 (1072)
339 PLN02827 Alcohol dehydrogenase 89.4 1.6 3.5E-05 41.0 8.0 96 119-224 191-294 (378)
340 TIGR01202 bchC 2-desacetyl-2-h 89.0 1.8 3.9E-05 39.4 7.7 85 122-224 145-230 (308)
341 PRK06940 short chain dehydroge 88.9 1.7 3.6E-05 38.8 7.4 98 124-224 4-124 (275)
342 PLN03154 putative allyl alcoho 88.8 2.7 5.8E-05 39.0 8.9 96 120-224 157-257 (348)
343 cd08261 Zn_ADH7 Alcohol dehydr 88.6 1.8 3.8E-05 39.5 7.5 96 121-224 159-257 (337)
344 PRK08945 putative oxoacyl-(acy 88.5 2.3 5E-05 36.9 7.9 79 121-200 11-100 (247)
345 KOG3924 Putative protein methy 88.4 0.82 1.8E-05 43.1 5.0 105 119-223 190-306 (419)
346 cd08234 threonine_DH_like L-th 88.3 4.7 0.0001 36.5 10.1 96 121-224 159-256 (334)
347 PRK10309 galactitol-1-phosphat 88.1 2.4 5.1E-05 39.0 8.1 97 121-224 160-259 (347)
348 PRK08703 short chain dehydroge 88.0 2.2 4.8E-05 36.8 7.4 78 122-200 6-95 (239)
349 PF11312 DUF3115: Protein of u 87.8 1.4 3.1E-05 40.4 6.1 107 121-227 86-244 (315)
350 cd08239 THR_DH_like L-threonin 87.6 2.2 4.7E-05 39.0 7.5 95 121-224 163-261 (339)
351 TIGR02818 adh_III_F_hyde S-(hy 87.5 3.7 8E-05 38.3 9.0 98 119-224 183-286 (368)
352 TIGR02825 B4_12hDH leukotriene 87.4 3.8 8.2E-05 37.2 8.9 95 121-224 138-236 (325)
353 PLN02740 Alcohol dehydrogenase 87.4 2.4 5.1E-05 39.8 7.7 95 118-224 195-299 (381)
354 COG1748 LYS9 Saccharopine dehy 87.4 2.4 5.2E-05 40.2 7.6 71 123-199 2-75 (389)
355 cd05285 sorbitol_DH Sorbitol d 87.3 3.5 7.7E-05 37.7 8.7 98 120-224 161-264 (343)
356 COG1062 AdhC Zn-dependent alco 87.0 1.7 3.6E-05 40.4 6.1 99 117-224 181-284 (366)
357 cd08294 leukotriene_B4_DH_like 86.9 3.3 7.2E-05 37.4 8.2 95 120-224 142-240 (329)
358 PF01408 GFO_IDH_MocA: Oxidore 86.5 12 0.00027 28.4 10.3 109 124-246 2-115 (120)
359 KOG0022 Alcohol dehydrogenase, 86.5 1.7 3.6E-05 40.1 5.7 47 117-163 188-235 (375)
360 cd08278 benzyl_alcohol_DH Benz 86.5 2.5 5.4E-05 39.3 7.3 95 120-224 185-284 (365)
361 KOG0023 Alcohol dehydrogenase, 85.9 2.3 5.1E-05 39.2 6.4 97 118-224 178-278 (360)
362 PLN03209 translocon at the inn 85.9 2.8 6.1E-05 41.8 7.4 80 120-200 78-167 (576)
363 PRK07102 short chain dehydroge 85.9 4.3 9.3E-05 35.1 8.0 75 124-199 3-83 (243)
364 PRK08324 short chain dehydroge 85.8 6.9 0.00015 39.9 10.5 101 122-225 422-557 (681)
365 TIGR02819 fdhA_non_GSH formald 85.7 3.3 7.1E-05 39.3 7.7 96 120-224 184-298 (393)
366 PRK08293 3-hydroxybutyryl-CoA 85.5 8 0.00017 34.9 9.8 92 124-222 5-117 (287)
367 TIGR00936 ahcY adenosylhomocys 85.5 11 0.00024 36.1 11.1 86 121-225 194-282 (406)
368 cd08293 PTGR2 Prostaglandin re 85.4 4.4 9.6E-05 37.0 8.3 94 123-224 156-253 (345)
369 cd08245 CAD Cinnamyl alcohol d 85.3 7.4 0.00016 35.2 9.7 93 121-224 162-255 (330)
370 COG0677 WecC UDP-N-acetyl-D-ma 85.3 2.1 4.6E-05 40.6 5.9 103 123-234 10-139 (436)
371 PRK12939 short chain dehydroge 85.3 6.1 0.00013 34.0 8.7 77 122-200 7-92 (250)
372 PF10237 N6-adenineMlase: Prob 85.3 9.1 0.0002 31.8 9.2 95 122-227 26-125 (162)
373 PRK06701 short chain dehydroge 85.1 4.9 0.00011 36.1 8.3 102 122-225 46-181 (290)
374 TIGR00497 hsdM type I restrict 85.1 27 0.00058 34.3 13.9 104 121-225 217-355 (501)
375 cd08236 sugar_DH NAD(P)-depend 84.9 2.7 5.8E-05 38.4 6.5 95 121-224 159-257 (343)
376 KOG2360 Proliferation-associat 84.8 1.7 3.8E-05 40.8 5.1 66 118-183 210-276 (413)
377 PRK07454 short chain dehydroge 84.8 6.8 0.00015 33.7 8.8 78 121-200 5-91 (241)
378 PRK07904 short chain dehydroge 84.4 5.8 0.00013 34.8 8.3 78 121-199 7-94 (253)
379 PRK09291 short chain dehydroge 84.0 4.3 9.3E-05 35.3 7.2 76 123-200 3-81 (257)
380 cd08265 Zn_ADH3 Alcohol dehydr 84.0 6.4 0.00014 36.9 8.8 97 120-224 202-306 (384)
381 COG4627 Uncharacterized protei 83.9 0.59 1.3E-05 38.6 1.5 36 190-225 45-86 (185)
382 TIGR01963 PHB_DH 3-hydroxybuty 83.7 5.3 0.00011 34.5 7.6 75 124-200 3-86 (255)
383 PRK07326 short chain dehydroge 83.6 5.7 0.00012 34.0 7.8 75 122-199 6-89 (237)
384 COG2961 ComJ Protein involved 83.6 29 0.00063 31.0 11.9 130 126-259 93-230 (279)
385 PF11899 DUF3419: Protein of u 83.5 3.3 7.1E-05 39.3 6.5 45 119-165 33-77 (380)
386 PLN02350 phosphogluconate dehy 83.4 9.8 0.00021 37.4 10.0 116 131-251 13-132 (493)
387 PRK08339 short chain dehydroge 83.4 6.7 0.00014 34.6 8.2 78 122-200 8-93 (263)
388 PLN02989 cinnamyl-alcohol dehy 83.4 3.6 7.7E-05 37.4 6.7 78 122-200 5-85 (325)
389 PRK05708 2-dehydropantoate 2-r 83.2 8.1 0.00017 35.3 8.9 103 123-234 3-114 (305)
390 COG0673 MviM Predicted dehydro 83.1 9.9 0.00021 34.7 9.5 113 122-248 3-122 (342)
391 TIGR00853 pts-lac PTS system, 82.8 4.2 9.1E-05 30.5 5.7 55 123-200 4-58 (95)
392 PRK05866 short chain dehydroge 82.7 4 8.6E-05 36.9 6.6 77 122-200 40-125 (293)
393 PRK07530 3-hydroxybutyryl-CoA 82.7 18 0.00039 32.5 10.9 92 123-222 5-116 (292)
394 PRK15057 UDP-glucose 6-dehydro 82.6 9.3 0.0002 36.3 9.3 33 131-163 7-40 (388)
395 PF04378 RsmJ: Ribosomal RNA s 82.5 10 0.00022 33.7 8.8 113 132-246 66-185 (245)
396 PRK06139 short chain dehydroge 82.5 4.2 9.1E-05 37.6 6.8 77 122-200 7-92 (330)
397 cd08286 FDH_like_ADH2 formalde 82.5 6.3 0.00014 36.0 7.9 96 120-224 165-265 (345)
398 cd00401 AdoHcyase S-adenosyl-L 82.5 7.3 0.00016 37.4 8.5 84 121-224 201-288 (413)
399 PRK06949 short chain dehydroge 82.2 8.3 0.00018 33.4 8.3 77 122-200 9-94 (258)
400 cd08300 alcohol_DH_class_III c 82.1 11 0.00024 34.9 9.6 95 119-224 184-287 (368)
401 PRK12490 6-phosphogluconate de 82.1 12 0.00026 33.9 9.6 107 131-249 7-117 (299)
402 KOG2013 SMT3/SUMO-activating c 82.1 1.3 2.8E-05 42.8 3.2 76 122-198 12-109 (603)
403 PRK10669 putative cation:proto 82.0 7.1 0.00015 38.8 8.6 92 123-224 418-514 (558)
404 cd08295 double_bond_reductase_ 81.8 12 0.00026 34.2 9.5 96 120-224 150-250 (338)
405 PRK06124 gluconate 5-dehydroge 81.8 8.9 0.00019 33.3 8.4 77 122-200 11-96 (256)
406 COG2084 MmsB 3-hydroxyisobutyr 81.5 9.1 0.0002 34.8 8.3 106 131-250 7-119 (286)
407 PRK08213 gluconate 5-dehydroge 81.1 9.4 0.0002 33.2 8.3 77 122-200 12-97 (259)
408 PRK07985 oxidoreductase; Provi 81.0 17 0.00037 32.6 10.2 102 122-225 49-185 (294)
409 COG4301 Uncharacterized conser 80.9 28 0.00061 31.2 10.7 102 121-224 78-192 (321)
410 COG0287 TyrA Prephenate dehydr 80.9 23 0.00049 32.1 10.7 86 123-222 4-95 (279)
411 cd05281 TDH Threonine dehydrog 80.8 7.9 0.00017 35.4 8.0 97 121-224 163-261 (341)
412 PRK07666 fabG 3-ketoacyl-(acyl 80.7 10 0.00022 32.5 8.3 77 122-200 7-92 (239)
413 PRK07523 gluconate 5-dehydroge 80.7 9.5 0.00021 33.1 8.1 77 122-200 10-95 (255)
414 PRK09599 6-phosphogluconate de 80.6 16 0.00035 33.1 9.9 111 125-249 3-117 (301)
415 TIGR01692 HIBADH 3-hydroxyisob 80.5 13 0.00027 33.6 9.1 105 131-250 3-114 (288)
416 PLN02819 lysine-ketoglutarate 80.4 9.4 0.0002 40.9 9.1 73 122-199 569-655 (1042)
417 TIGR00692 tdh L-threonine 3-de 80.3 7.9 0.00017 35.3 7.8 96 121-224 161-260 (340)
418 PRK05396 tdh L-threonine 3-deh 80.3 7 0.00015 35.7 7.5 97 122-225 164-263 (341)
419 KOG2539 Mitochondrial/chloropl 80.1 6.7 0.00015 37.9 7.2 98 122-225 201-315 (491)
420 PRK05599 hypothetical protein; 80.1 8.3 0.00018 33.6 7.6 76 124-200 2-85 (246)
421 PTZ00142 6-phosphogluconate de 80.0 22 0.00049 34.7 11.1 118 125-250 4-125 (470)
422 COG1565 Uncharacterized conser 79.9 5.3 0.00011 37.5 6.3 47 122-168 78-132 (370)
423 PRK07502 cyclohexadienyl dehyd 79.8 14 0.0003 33.6 9.2 96 123-233 7-107 (307)
424 cd08238 sorbose_phosphate_red 79.8 6.7 0.00014 37.2 7.3 104 120-226 174-289 (410)
425 PRK06172 short chain dehydroge 79.6 11 0.00025 32.5 8.3 77 122-200 7-92 (253)
426 cd08277 liver_alcohol_DH_like 79.5 15 0.00033 34.0 9.5 95 120-224 183-285 (365)
427 PF03721 UDPG_MGDP_dh_N: UDP-g 79.4 14 0.0003 31.2 8.4 88 131-225 7-120 (185)
428 COG0604 Qor NADPH:quinone redu 78.9 8.1 0.00018 35.7 7.4 98 120-225 141-241 (326)
429 TIGR00872 gnd_rel 6-phosphoglu 78.8 14 0.00031 33.5 8.9 112 125-250 3-117 (298)
430 cd08279 Zn_ADH_class_III Class 78.8 7.6 0.00016 36.0 7.2 96 120-224 181-281 (363)
431 cd08231 MDR_TM0436_like Hypoth 78.7 15 0.00032 33.8 9.2 94 121-224 177-279 (361)
432 cd08263 Zn_ADH10 Alcohol dehyd 78.7 7.5 0.00016 36.0 7.2 95 121-224 187-286 (367)
433 PRK06128 oxidoreductase; Provi 78.5 11 0.00025 33.8 8.2 101 122-224 55-190 (300)
434 PTZ00075 Adenosylhomocysteinas 78.4 14 0.00029 36.2 8.9 85 121-224 253-340 (476)
435 KOG1098 Putative SAM-dependent 78.4 2.3 5E-05 42.4 3.6 92 120-222 43-155 (780)
436 PF01210 NAD_Gly3P_dh_N: NAD-d 78.4 11 0.00023 30.8 7.2 93 125-224 2-102 (157)
437 PRK05867 short chain dehydroge 78.3 11 0.00024 32.7 7.9 77 122-200 9-94 (253)
438 PRK07814 short chain dehydroge 78.3 13 0.00028 32.5 8.3 77 122-200 10-95 (263)
439 PRK06181 short chain dehydroge 78.3 13 0.00028 32.4 8.2 76 123-200 2-86 (263)
440 PF02737 3HCDH_N: 3-hydroxyacy 78.2 24 0.00053 29.5 9.5 99 125-233 2-122 (180)
441 PLN02586 probable cinnamyl alc 78.1 12 0.00025 34.9 8.3 93 121-224 183-277 (360)
442 PRK07576 short chain dehydroge 78.1 14 0.00029 32.6 8.4 77 122-200 9-94 (264)
443 PRK10310 PTS system galactitol 78.0 5.9 0.00013 29.6 5.1 52 128-200 7-58 (94)
444 PRK05854 short chain dehydroge 77.9 6.4 0.00014 35.9 6.4 78 122-200 14-101 (313)
445 PRK03659 glutathione-regulated 77.7 9.8 0.00021 38.3 8.1 92 123-224 401-497 (601)
446 COG4121 Uncharacterized conser 77.7 12 0.00026 33.4 7.7 136 122-270 59-242 (252)
447 PRK06914 short chain dehydroge 77.7 14 0.0003 32.6 8.3 78 122-200 3-89 (280)
448 PRK05565 fabG 3-ketoacyl-(acyl 77.5 7.9 0.00017 33.1 6.6 77 122-200 5-91 (247)
449 cd05564 PTS_IIB_chitobiose_lic 77.3 5.2 0.00011 30.0 4.6 51 128-200 4-54 (96)
450 PRK07677 short chain dehydroge 77.3 13 0.00029 32.2 8.0 76 123-200 2-86 (252)
451 PRK08267 short chain dehydroge 77.3 7.8 0.00017 33.8 6.5 73 124-200 3-85 (260)
452 KOG1201 Hydroxysteroid 17-beta 77.1 11 0.00024 34.4 7.3 76 122-200 38-122 (300)
453 cd08233 butanediol_DH_like (2R 77.0 10 0.00022 34.8 7.5 95 121-224 172-271 (351)
454 PRK07453 protochlorophyllide o 76.9 6.2 0.00014 35.9 6.0 77 122-200 6-91 (322)
455 cd08267 MDR1 Medium chain dehy 76.9 24 0.00051 31.3 9.7 95 121-224 143-239 (319)
456 PRK08217 fabG 3-ketoacyl-(acyl 76.8 16 0.00035 31.3 8.3 77 122-200 5-90 (253)
457 PRK06196 oxidoreductase; Provi 76.5 7.4 0.00016 35.3 6.4 73 122-200 26-107 (315)
458 PF03269 DUF268: Caenorhabditi 76.2 1.5 3.2E-05 36.5 1.4 120 122-253 2-146 (177)
459 PRK06194 hypothetical protein; 75.8 16 0.00034 32.4 8.2 77 122-200 6-91 (287)
460 TIGR03206 benzo_BadH 2-hydroxy 75.7 17 0.00038 31.1 8.3 77 122-200 3-88 (250)
461 PRK12744 short chain dehydroge 75.7 17 0.00036 31.6 8.2 101 122-224 8-144 (257)
462 cd08241 QOR1 Quinone oxidoredu 75.5 15 0.00032 32.5 8.0 94 121-224 139-237 (323)
463 PRK06125 short chain dehydroge 75.5 17 0.00038 31.6 8.3 78 122-200 7-89 (259)
464 PRK05808 3-hydroxybutyryl-CoA 75.4 25 0.00055 31.4 9.4 90 124-223 5-116 (282)
465 TIGR00518 alaDH alanine dehydr 75.3 4.8 0.0001 37.9 4.9 94 122-223 167-265 (370)
466 PRK12384 sorbitol-6-phosphate 75.2 17 0.00037 31.5 8.2 78 122-200 2-89 (259)
467 PLN02668 indole-3-acetate carb 75.2 2.3 4.9E-05 40.4 2.6 33 122-154 64-111 (386)
468 PRK11559 garR tartronate semia 75.2 26 0.00056 31.5 9.5 110 124-250 4-120 (296)
469 PRK08862 short chain dehydroge 75.1 15 0.00033 31.7 7.7 77 122-200 5-91 (227)
470 PRK05476 S-adenosyl-L-homocyst 75.0 23 0.0005 34.1 9.4 86 121-225 211-299 (425)
471 PRK15182 Vi polysaccharide bio 75.0 15 0.00033 35.3 8.2 39 122-162 6-45 (425)
472 PRK09135 pteridine reductase; 74.9 19 0.0004 30.8 8.3 78 122-200 6-93 (249)
473 TIGR02356 adenyl_thiF thiazole 74.8 8.4 0.00018 33.0 5.9 76 122-199 21-118 (202)
474 PLN02702 L-idonate 5-dehydroge 74.8 19 0.00041 33.2 8.8 98 121-224 181-284 (364)
475 PRK12746 short chain dehydroge 74.7 21 0.00045 30.9 8.5 60 122-183 6-68 (254)
476 PLN02494 adenosylhomocysteinas 74.3 17 0.00036 35.6 8.3 86 121-224 253-340 (477)
477 PLN02545 3-hydroxybutyryl-CoA 74.3 18 0.00039 32.7 8.2 90 123-222 5-116 (295)
478 PRK09496 trkA potassium transp 74.2 26 0.00056 33.5 9.7 71 123-200 232-305 (453)
479 PRK06130 3-hydroxybutyryl-CoA 74.1 27 0.00059 31.7 9.4 92 123-221 5-111 (311)
480 PLN02896 cinnamyl-alcohol dehy 74.1 10 0.00022 35.0 6.7 77 121-200 9-87 (353)
481 PRK08655 prephenate dehydrogen 74.1 20 0.00043 34.6 8.8 86 124-223 2-90 (437)
482 TIGR00561 pntA NAD(P) transhyd 73.8 10 0.00022 37.5 6.7 93 122-222 164-281 (511)
483 PRK07063 short chain dehydroge 73.8 19 0.0004 31.4 8.0 78 122-200 7-94 (260)
484 cd05197 GH4_glycoside_hydrolas 73.4 23 0.0005 34.1 9.0 68 124-199 2-81 (425)
485 PRK15461 NADH-dependent gamma- 73.3 18 0.00038 32.8 7.9 105 131-250 8-119 (296)
486 PRK12826 3-ketoacyl-(acyl-carr 73.3 20 0.00043 30.7 8.0 77 122-200 6-91 (251)
487 cd08242 MDR_like Medium chain 73.3 33 0.00071 30.8 9.7 86 121-223 155-243 (319)
488 PF13561 adh_short_C2: Enoyl-( 73.2 7.1 0.00015 33.8 5.1 94 129-225 1-133 (241)
489 PRK07533 enoyl-(acyl carrier p 72.7 17 0.00037 31.8 7.5 77 122-200 10-96 (258)
490 PRK07109 short chain dehydroge 72.4 22 0.00048 32.7 8.5 77 122-200 8-93 (334)
491 PLN02662 cinnamyl-alcohol dehy 72.4 11 0.00024 33.9 6.4 78 122-200 4-84 (322)
492 PRK08643 acetoin reductase; Va 72.4 22 0.00047 30.8 8.1 77 122-200 2-87 (256)
493 cd08243 quinone_oxidoreductase 72.4 25 0.00054 31.2 8.7 94 120-224 141-237 (320)
494 PRK09260 3-hydroxybutyryl-CoA 72.3 27 0.00058 31.4 8.8 100 124-232 3-124 (288)
495 PRK08251 short chain dehydroge 72.3 23 0.0005 30.4 8.2 78 122-200 2-89 (248)
496 cd00755 YgdL_like Family of ac 72.2 12 0.00025 33.0 6.2 77 122-199 11-109 (231)
497 PRK06113 7-alpha-hydroxysteroi 72.2 24 0.00051 30.6 8.3 77 122-200 11-96 (255)
498 cd05298 GH4_GlvA_pagL_like Gly 72.0 28 0.00061 33.6 9.3 68 124-199 2-81 (437)
499 PRK08416 7-alpha-hydroxysteroi 71.8 26 0.00057 30.5 8.5 77 122-200 8-95 (260)
500 PRK05876 short chain dehydroge 71.7 21 0.00046 31.7 8.0 77 122-200 6-91 (275)
No 1
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=99.97 E-value=2.1e-30 Score=220.67 Aligned_cols=186 Identities=44% Similarity=0.739 Sum_probs=168.6
Q ss_pred HHHHHHHHHHHhhcCcCceeecChHHHHHhhhhhccccCCCCccccccccCCCCCCCCeEEEEcCCCChHHHHHHHHCCC
Q 022962 66 QIHLYVDALLQWNRKMNLTAVKDVNEVMERHIDDSLAIIPPIKNSYTSHCDSSCNSNLKLVDVGTGAGLPGLVLAIACPD 145 (289)
Q Consensus 66 ~l~~~~~~l~~~n~~~~l~~~~~~~~~~~~~~~~sl~~~~~~~~~~~~~~~~~~~~~~~VLDiGcG~G~~~l~la~~~p~ 145 (289)
+|+.|..++.+||+.+|+++.+..++.|.+|+.|++.+....+ ++.+|||+|||+|..++.+|...|+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~l~l~~~l~------------~g~~VLDiGcGtG~~al~la~~~~~ 69 (187)
T PRK00107 2 QLEAYVELLVKWNKKYNLTAIRDPEELWERHILDSLAIAPYLP------------GGERVLDVGSGAGFPGIPLAIARPE 69 (187)
T ss_pred hHHHHHHHHHHhcccccccccCCHHHHHHHHHHHHHHHHhhcC------------CCCeEEEEcCCCCHHHHHHHHHCCC
Confidence 5889999999999999999999999999999999987765443 3789999999999999999988889
Q ss_pred CEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCcCCCCceEEEEcCcccHHHHHHHHccccccCeEEEEEE
Q 022962 146 WKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARAVAEMRILAEYCLPLVRVGGLFVAAK 225 (289)
Q Consensus 146 ~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~~~~~fD~V~sn~~~~~~~ll~~~~~~LkpgG~l~~~~ 225 (289)
.+|+|+|+|+++++.|+++++.+++++++++++|++++.. .++||+|++++..+++.+++.+.+.|+|||++++..
T Consensus 70 ~~V~giD~s~~~l~~A~~~~~~~~l~~i~~~~~d~~~~~~----~~~fDlV~~~~~~~~~~~l~~~~~~LkpGG~lv~~~ 145 (187)
T PRK00107 70 LKVTLVDSLGKKIAFLREVAAELGLKNVTVVHGRAEEFGQ----EEKFDVVTSRAVASLSDLVELCLPLLKPGGRFLALK 145 (187)
T ss_pred CeEEEEeCcHHHHHHHHHHHHHcCCCCEEEEeccHhhCCC----CCCccEEEEccccCHHHHHHHHHHhcCCCeEEEEEe
Confidence 9999999999999999999999999889999999988654 368999999999999999999999999999999999
Q ss_pred cCCcHHHHHHHHHHHHHhCCeEeEEeeeecCCCCCceEEEEEEec
Q 022962 226 GHDPQEEVKNSERAVQLMGASLLQLCSVESQSPFGQRTAVVCLKS 270 (289)
Q Consensus 226 g~~~~~ei~~~~~~l~~~g~~~~~~~~~~~~~~~~~r~lv~~~k~ 270 (289)
+.....++.++.+ ..|+.+.....++.|..+|++++++++|+
T Consensus 146 ~~~~~~~l~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (187)
T PRK00107 146 GRDPEEEIAELPK---ALGGKVEEVIELTLPGLDGERHLVIIRKK 187 (187)
T ss_pred CCChHHHHHHHHH---hcCceEeeeEEEecCCCCCcEEEEEEecC
Confidence 9888877766554 67999999888888999999999999974
No 2
>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.
Probab=99.97 E-value=2e-30 Score=219.73 Aligned_cols=184 Identities=43% Similarity=0.715 Sum_probs=158.8
Q ss_pred HHHHHHHHHHHHHHhhcCcCceeecChHHHHHhhhhhccccCCCCccccccccCCCCCCCCeEEEEcCCCChHHHHHHHH
Q 022962 63 QQEQIHLYVDALLQWNRKMNLTAVKDVNEVMERHIDDSLAIIPPIKNSYTSHCDSSCNSNLKLVDVGTGAGLPGLVLAIA 142 (289)
Q Consensus 63 ~~~~l~~~~~~l~~~n~~~~l~~~~~~~~~~~~~~~~sl~~~~~~~~~~~~~~~~~~~~~~~VLDiGcG~G~~~l~la~~ 142 (289)
|.+++..|.+.+.+||+++||+++++.+++|.+|++||+.+.+.++.. +.+++|||||.|++|+.+|..
T Consensus 1 q~~~l~~y~~lL~~~N~~~NLt~~~~~~~~~~~Hi~DSL~~~~~~~~~-----------~~~~lDiGSGaGfPGipLaI~ 69 (184)
T PF02527_consen 1 QIEKLEQYLELLLEWNKKINLTSIRDPEEIWERHILDSLALLPFLPDF-----------GKKVLDIGSGAGFPGIPLAIA 69 (184)
T ss_dssp HHHHHHHHHHHHHHHHHCSSS-S--SHHHHHHHHHHHHHGGGGCS-CC-----------CSEEEEETSTTTTTHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCceeeeccCCCHHHHHHHHHHHHHHhhhhhccC-----------CceEEecCCCCCChhHHHHHh
Confidence 678999999999999999999999999999999999999998877641 238999999999999999999
Q ss_pred CCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCcCCCCceEEEEcCcccHHHHHHHHccccccCeEEE
Q 022962 143 CPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARAVAEMRILAEYCLPLVRVGGLFV 222 (289)
Q Consensus 143 ~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~~~~~fD~V~sn~~~~~~~ll~~~~~~LkpgG~l~ 222 (289)
+|+.+|+.+|.+.+.+++.++.++.++++|++++++++++. ....+||+|+|+|++++..+++.+.+++++||.++
T Consensus 70 ~p~~~~~LvEs~~KK~~FL~~~~~~L~L~nv~v~~~R~E~~----~~~~~fd~v~aRAv~~l~~l~~~~~~~l~~~G~~l 145 (184)
T PF02527_consen 70 RPDLQVTLVESVGKKVAFLKEVVRELGLSNVEVINGRAEEP----EYRESFDVVTARAVAPLDKLLELARPLLKPGGRLL 145 (184)
T ss_dssp -TTSEEEEEESSHHHHHHHHHHHHHHT-SSEEEEES-HHHT----TTTT-EEEEEEESSSSHHHHHHHHGGGEEEEEEEE
T ss_pred CCCCcEEEEeCCchHHHHHHHHHHHhCCCCEEEEEeeeccc----ccCCCccEEEeehhcCHHHHHHHHHHhcCCCCEEE
Confidence 99999999999999999999999999999999999999992 23478999999999999999999999999999999
Q ss_pred EEEcCCcHHHHHHHHHHHHHhCCeEeEEeeeecCCCCCceEEE
Q 022962 223 AAKGHDPQEEVKNSERAVQLMGASLLQLCSVESQSPFGQRTAV 265 (289)
Q Consensus 223 ~~~g~~~~~ei~~~~~~l~~~g~~~~~~~~~~~~~~~~~r~lv 265 (289)
+++|....+|+.++.+.++..+.+...+..+.. ..|++|
T Consensus 146 ~~KG~~~~~El~~~~~~~~~~~~~~~~v~~~~~----~~r~l~ 184 (184)
T PF02527_consen 146 AYKGPDAEEELEEAKKAWKKLGLKVLSVPEFEL----PERHLV 184 (184)
T ss_dssp EEESS--HHHHHTHHHHHHCCCEEEEEEEEEE-----TEEEEE
T ss_pred EEcCCChHHHHHHHHhHHHHhCCEEeeeccccC----CCCCCC
Confidence 999999999999999999999999988887742 246664
No 3
>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]
Probab=99.97 E-value=1.6e-30 Score=223.86 Aligned_cols=203 Identities=41% Similarity=0.691 Sum_probs=184.1
Q ss_pred ccCCCCCHHHHHHHHHHHHHHHHhhcCcCceeecChHHHHHhhhhhccccCCCCccccccccCCCCCCCCeEEEEcCCCC
Q 022962 54 SHFETLNTRQQEQIHLYVDALLQWNRKMNLTAVKDVNEVMERHIDDSLAIIPPIKNSYTSHCDSSCNSNLKLVDVGTGAG 133 (289)
Q Consensus 54 ~~~~~~~~~~~~~l~~~~~~l~~~n~~~~l~~~~~~~~~~~~~~~~sl~~~~~~~~~~~~~~~~~~~~~~~VLDiGcG~G 133 (289)
.+..++++++.+++..|.+++.+||+.+||+++++.+++|.+|++||+.+...... .+.+++|||+|.|
T Consensus 11 ~~~~~~~~~~~~~l~~Y~~lL~~wN~~~NLt~~~~~~e~~~rHilDSl~~~~~~~~-----------~~~~~~DIGSGaG 79 (215)
T COG0357 11 GLGLSVTEEQLEKLEAYVELLLKWNKAYNLTAIRDPEELWQRHILDSLVLLPYLDG-----------KAKRVLDIGSGAG 79 (215)
T ss_pred hccCCccHHHHHHHHHHHHHHHHhhHhcCCCCCCCHHHHHHHHHHHHhhhhhcccc-----------cCCEEEEeCCCCC
Confidence 45567888999999999999999999999999999999999999999998765431 0579999999999
Q ss_pred hHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCcCCCC-ceEEEEcCcccHHHHHHHHc
Q 022962 134 LPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQ-YDVAVARAVAEMRILAEYCL 212 (289)
Q Consensus 134 ~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~~~~~-fD~V~sn~~~~~~~ll~~~~ 212 (289)
++|+.+|..+|+.+||.+|...+.+.+++....+++++|++++++++|++... .. ||+|+|+|++++..+.+.+.
T Consensus 80 fPGipLAI~~p~~~vtLles~~Kk~~FL~~~~~eL~L~nv~i~~~RaE~~~~~----~~~~D~vtsRAva~L~~l~e~~~ 155 (215)
T COG0357 80 FPGIPLAIAFPDLKVTLLESLGKKIAFLREVKKELGLENVEIVHGRAEEFGQE----KKQYDVVTSRAVASLNVLLELCL 155 (215)
T ss_pred CchhhHHHhccCCcEEEEccCchHHHHHHHHHHHhCCCCeEEehhhHhhcccc----cccCcEEEeehccchHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999998753 23 99999999999999999999
Q ss_pred cccccCeEEEEEEcCCcHHHHHHHHHHHHHhCCeEeEEeeeecCCCCCceEEEEEEecC
Q 022962 213 PLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLLQLCSVESQSPFGQRTAVVCLKSR 271 (289)
Q Consensus 213 ~~LkpgG~l~~~~g~~~~~ei~~~~~~l~~~g~~~~~~~~~~~~~~~~~r~lv~~~k~~ 271 (289)
.++|+||.++++++....++..+...+....|+....+..+..|...++|+++++++.+
T Consensus 156 pllk~~g~~~~~k~~~~~~e~~e~~~a~~~~~~~~~~~~~~~~p~~~~~r~l~ii~~~k 214 (215)
T COG0357 156 PLLKVGGGFLAYKGLAGKDELPEAEKAILPLGGQVEKVFSLTVPELDGERHLVIIRKRK 214 (215)
T ss_pred HhcccCCcchhhhHHhhhhhHHHHHHHHHhhcCcEEEEEEeecCCCCCceEEEEEeccC
Confidence 99999999988888777788888888888999999999888888888899999999864
No 4
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=99.96 E-value=6.6e-28 Score=204.62 Aligned_cols=179 Identities=40% Similarity=0.685 Sum_probs=157.8
Q ss_pred HHHHHHHHHhhcCcCceeecChHHHHHhhhhhccccCCCCccccccccCCCCCCCCeEEEEcCCCChHHHHHHHHCCCCE
Q 022962 68 HLYVDALLQWNRKMNLTAVKDVNEVMERHIDDSLAIIPPIKNSYTSHCDSSCNSNLKLVDVGTGAGLPGLVLAIACPDWK 147 (289)
Q Consensus 68 ~~~~~~l~~~n~~~~l~~~~~~~~~~~~~~~~sl~~~~~~~~~~~~~~~~~~~~~~~VLDiGcG~G~~~l~la~~~p~~~ 147 (289)
..|...+++||+++|+++.+...++|.+++.+++.....+ ++.+|||+|||+|.+++.+|...++.+
T Consensus 2 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~d~i~~~~~~-------------~~~~vLDiGcGtG~~s~~la~~~~~~~ 68 (181)
T TIGR00138 2 KAYLELLQKWNKRFNLTSLKTPEEIWERHILDSLKLLEYL-------------DGKKVIDIGSGAGFPGIPLAIARPELK 68 (181)
T ss_pred HHHHHHHHHHhhcccccccCCHHHHHHHHHHHHHHHHHhc-------------CCCeEEEecCCCCccHHHHHHHCCCCe
Confidence 5678889999999999999999999999999987654332 278999999999999999998888899
Q ss_pred EEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCcCCCCceEEEEcCcccHHHHHHHHccccccCeEEEEEEcC
Q 022962 148 VTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARAVAEMRILAEYCLPLVRVGGLFVAAKGH 227 (289)
Q Consensus 148 V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~~~~~fD~V~sn~~~~~~~ll~~~~~~LkpgG~l~~~~g~ 227 (289)
|+|+|+|+.+++.+++++++++++|++++++|++++.. .++||+|+|+++.+++.+++.+.++|+|||.+++..+.
T Consensus 69 V~~iD~s~~~~~~a~~~~~~~~~~~i~~i~~d~~~~~~----~~~fD~I~s~~~~~~~~~~~~~~~~LkpgG~lvi~~~~ 144 (181)
T TIGR00138 69 LTLLESNHKKVAFLREVKAELGLNNVEIVNGRAEDFQH----EEQFDVITSRALASLNVLLELTLNLLKVGGYFLAYKGK 144 (181)
T ss_pred EEEEeCcHHHHHHHHHHHHHhCCCCeEEEecchhhccc----cCCccEEEehhhhCHHHHHHHHHHhcCCCCEEEEEcCC
Confidence 99999999999999999999998889999999998642 36899999999888899999999999999999999999
Q ss_pred CcHHHHHHHHHHHHHhCCeEeEEeeeecCCCCCceEEEEE
Q 022962 228 DPQEEVKNSERAVQLMGASLLQLCSVESQSPFGQRTAVVC 267 (289)
Q Consensus 228 ~~~~ei~~~~~~l~~~g~~~~~~~~~~~~~~~~~r~lv~~ 267 (289)
....++..+.+.+...|++.++..++..| .|+.+++
T Consensus 145 ~~~~~~~~~~e~~~~~~~~~~~~~~~~~~----~~~~~~~ 180 (181)
T TIGR00138 145 KYLDEIEEAKRKCQVLGVEPLEVPPLTGP----DRHLVIL 180 (181)
T ss_pred CcHHHHHHHHHhhhhcCceEeeccccCCC----ceEEEEE
Confidence 89999888888777899999998876544 5777665
No 5
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=99.92 E-value=2.5e-24 Score=201.40 Aligned_cols=205 Identities=16% Similarity=0.140 Sum_probs=161.1
Q ss_pred cchhhhhhchhhh------hhhccCCCCCHHHHHHHHHHHHHHHHhhcCcCceeecChHHHHHhhhhhccccCCCCcccc
Q 022962 38 HRTRAKTLTTTRI------VNSSHFETLNTRQQEQIHLYVDALLQWNRKMNLTAVKDVNEVMERHIDDSLAIIPPIKNSY 111 (289)
Q Consensus 38 ~r~~~~~l~~~~~------~~~~~~~~~~~~~~~~l~~~~~~l~~~n~~~~l~~~~~~~~~~~~~~~~sl~~~~~~~~~~ 111 (289)
.+.+++.|..+.. .......++++++.+++..+.+++. ++.|++|+.+..+|++..+..+...++|+++|+
T Consensus 163 p~~dA~~LL~~~l~~~r~~l~~~~~~~l~~~~~~~~~~~v~RR~---~gePlqYIlG~~~F~G~~f~V~p~vLIPRpeTE 239 (423)
T PRK14966 163 PKNEARMLLQYASEYTRVQLLTRGGEEMPDEVRQRADRLAQRRL---NGEPVAYILGVREFYGRRFAVNPNVLIPRPETE 239 (423)
T ss_pred hHHHHHHHHHHHHCcCHHHHhhCCcccCCHHHHHHHHHHHHHHH---cCCCceeEeeeeeecCcEEEeCCCccCCCccHH
Confidence 3445555555541 1223446788887777777777666 899999999999999999999999999999998
Q ss_pred cc--ccCCCCCCCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCcC
Q 022962 112 TS--HCDSSCNSNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSF 189 (289)
Q Consensus 112 ~~--~~~~~~~~~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~~ 189 (289)
.+ .....++++.+|||+|||+|.+++.++...|+.+|+|+|+|+.+++.|++|++.++. +++++++|+.+.... .
T Consensus 240 ~LVe~aL~~l~~~~rVLDLGcGSG~IaiaLA~~~p~a~VtAVDiS~~ALe~AreNa~~~g~-rV~fi~gDl~e~~l~--~ 316 (423)
T PRK14966 240 HLVEAVLARLPENGRVWDLGTGSGAVAVTVALERPDAFVRASDISPPALETARKNAADLGA-RVEFAHGSWFDTDMP--S 316 (423)
T ss_pred HHHHHhhhccCCCCEEEEEeChhhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCC-cEEEEEcchhccccc--c
Confidence 65 222334456799999999999999999888999999999999999999999998886 799999998654221 1
Q ss_pred CCCceEEEEcCc-----------------------------ccHHHHHHHHccccccCeEEEEEEcCCcHHHHHHHHHHH
Q 022962 190 REQYDVAVARAV-----------------------------AEMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAV 240 (289)
Q Consensus 190 ~~~fD~V~sn~~-----------------------------~~~~~ll~~~~~~LkpgG~l~~~~g~~~~~ei~~~~~~l 240 (289)
.++||+|+||.. ..++.+++.+.+.|+|||.++++.|.++.+++.+++
T Consensus 317 ~~~FDLIVSNPPYI~~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~LkpgG~lilEiG~~Q~e~V~~ll--- 393 (423)
T PRK14966 317 EGKWDIIVSNPPYIENGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRLAEGGFLLLEHGFDQGAAVRGVL--- 393 (423)
T ss_pred CCCccEEEECCCCCCcchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHHhcCCCcEEEEEECccHHHHHHHHH---
Confidence 257999999930 125688889999999999999999998888876654
Q ss_pred HHhCCeEeEEe
Q 022962 241 QLMGASLLQLC 251 (289)
Q Consensus 241 ~~~g~~~~~~~ 251 (289)
++.||..+++.
T Consensus 394 ~~~Gf~~v~v~ 404 (423)
T PRK14966 394 AENGFSGVETL 404 (423)
T ss_pred HHCCCcEEEEE
Confidence 47888765553
No 6
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=99.92 E-value=9.3e-25 Score=211.89 Aligned_cols=215 Identities=15% Similarity=0.201 Sum_probs=168.6
Q ss_pred ccCCCCCHHHHHHHHHHHHHHHHhhcCcCceeecChHHHHHhhhhhccccCCCCcccccc--ccCCC-------------
Q 022962 54 SHFETLNTRQQEQIHLYVDALLQWNRKMNLTAVKDVNEVMERHIDDSLAIIPPIKNSYTS--HCDSS------------- 118 (289)
Q Consensus 54 ~~~~~~~~~~~~~l~~~~~~l~~~n~~~~l~~~~~~~~~~~~~~~~sl~~~~~~~~~~~~--~~~~~------------- 118 (289)
....++++++.+.+..+.+++. ++.|++|+.+..+||+..|..+..+++|+|+||++ .+...
T Consensus 46 ~~~~~l~~~~~~~~~~~~~rr~---~~ePlqYI~G~~~F~g~~f~V~~~VLIPRpeTE~Lve~~l~~~~~~~~~~~~~~~ 122 (506)
T PRK01544 46 NLDEQLNEAEIEAFEKLLERRL---KHEPIAYITGVKEFYSREFIVNKHVLIPRSDTEVLVDVVFQCHSRESGNPEKKQL 122 (506)
T ss_pred ccCCCCCHHHHHHHHHHHHHHH---cCCCHHHHhCcCEEcCcEEEeCCCcccCCCcHHHHHHHHHHHhhhcccccccccc
Confidence 3456788888777777777666 89999999999999999999999999999999965 11100
Q ss_pred -------------CCCCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCC-CEEEEeccccccC
Q 022962 119 -------------CNSNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLL-NVQIVRGRAETLG 184 (289)
Q Consensus 119 -------------~~~~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~-ni~~~~~d~~~~~ 184 (289)
..++.+|||+|||+|++++.++...|+.+|+|+|+|+.+++.|++|++.+++. +++++++|+.+..
T Consensus 123 ~~~~~~~~~~~~~~~~~~~VLDlG~GsG~iai~la~~~p~~~v~avDis~~al~~A~~N~~~~~l~~~v~~~~~D~~~~~ 202 (506)
T PRK01544 123 NPCFRGNDISSNCNDKFLNILELGTGSGCIAISLLCELPNANVIATDISLDAIEVAKSNAIKYEVTDRIQIIHSNWFENI 202 (506)
T ss_pred ccccccccccccccCCCCEEEEccCchhHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHcCCccceeeeecchhhhC
Confidence 11246899999999999999998889999999999999999999999998875 6999999986532
Q ss_pred CCCcCCCCceEEEEcC------------------------------cccHHHHHHHHccccccCeEEEEEEcCCcHHHHH
Q 022962 185 KDVSFREQYDVAVARA------------------------------VAEMRILAEYCLPLVRVGGLFVAAKGHDPQEEVK 234 (289)
Q Consensus 185 ~~~~~~~~fD~V~sn~------------------------------~~~~~~ll~~~~~~LkpgG~l~~~~g~~~~~ei~ 234 (289)
. .++||+|+||. ...+..+++.+.++|+|||.++++.|.++.+.+.
T Consensus 203 ~----~~~fDlIvsNPPYi~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~il~~a~~~L~~gG~l~lEig~~q~~~v~ 278 (506)
T PRK01544 203 E----KQKFDFIVSNPPYISHSEKSEMAIETINYEPSIALFAEEDGLQAYFIIAENAKQFLKPNGKIILEIGFKQEEAVT 278 (506)
T ss_pred c----CCCccEEEECCCCCCchhhhhcCchhhccCcHHHhcCCccHHHHHHHHHHHHHHhccCCCEEEEEECCchHHHHH
Confidence 1 25799999982 0135678889999999999999999998888776
Q ss_pred HHHHHHHHhCCeEeEEeeeecCCCCCceEEEEEEecCCCCCCCCCCCCC
Q 022962 235 NSERAVQLMGASLLQLCSVESQSPFGQRTAVVCLKSRRTPKKYPRDPGT 283 (289)
Q Consensus 235 ~~~~~l~~~g~~~~~~~~~~~~~~~~~r~lv~~~k~~~~p~~~pr~~g~ 283 (289)
.++ ...||..+++. +...++..++.--.....+.|.|+.|.
T Consensus 279 ~~~---~~~g~~~~~~~-----~D~~g~~R~v~~~~~~~~rs~~rr~g~ 319 (506)
T PRK01544 279 QIF---LDHGYNIESVY-----KDLQGHSRVILISPINLNRSYARRIGK 319 (506)
T ss_pred HHH---HhcCCCceEEE-----ecCCCCceEEEeccccCCcceeccCCC
Confidence 654 46788766553 233444444444445666799999884
No 7
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=99.91 E-value=1.7e-23 Score=189.67 Aligned_cols=188 Identities=18% Similarity=0.185 Sum_probs=152.6
Q ss_pred ccCCCCCHHHHHHHHHHHHHHHHhhcCcCceeecChHHHHHhhhhhccccCCCCcccccc--ccCC---CCCCCCeEEEE
Q 022962 54 SHFETLNTRQQEQIHLYVDALLQWNRKMNLTAVKDVNEVMERHIDDSLAIIPPIKNSYTS--HCDS---SCNSNLKLVDV 128 (289)
Q Consensus 54 ~~~~~~~~~~~~~l~~~~~~l~~~n~~~~l~~~~~~~~~~~~~~~~sl~~~~~~~~~~~~--~~~~---~~~~~~~VLDi 128 (289)
....++++++..++..+.+++. ++.|++|+.+..+||+..|..+..++.|+++|+.+ +... ...+..+|||+
T Consensus 45 ~~~~~l~~~~~~~~~~~~~~r~---~~~pl~yi~g~~~f~g~~f~v~~~vliPr~ete~lv~~~l~~~~~~~~~~~vLDl 121 (284)
T TIGR00536 45 FLTEELTPDEKERIFRLVLRRV---KGVPVAYLLGSKEFYGLEFFVNEHVLIPRPETEELVEKALASLISQNPILHILDL 121 (284)
T ss_pred ccCCCCCHHHHHHHHHHHHHHH---cCCCHHHHhCcceEcCeEEEECCCCcCCCCccHHHHHHHHHHhhhcCCCCEEEEE
Confidence 3456788888888888888887 66999999999999999999999999999999854 2111 11222689999
Q ss_pred cCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCC-EEEEeccccccCCCCcCCCCceEEEEcC-------
Q 022962 129 GTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLN-VQIVRGRAETLGKDVSFREQYDVAVARA------- 200 (289)
Q Consensus 129 GcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~n-i~~~~~d~~~~~~~~~~~~~fD~V~sn~------- 200 (289)
|||+|.+++.++...++.+|+|+|+|+++++.|++|++.+++.+ ++++++|+.+... .++||+|+||.
T Consensus 122 G~GsG~i~l~la~~~~~~~v~avDis~~al~~a~~n~~~~~~~~~v~~~~~d~~~~~~----~~~fDlIvsNPPyi~~~~ 197 (284)
T TIGR00536 122 GTGSGCIALALAYEFPNAEVIAVDISPDALAVAEENAEKNQLEHRVEFIQSNLFEPLA----GQKIDIIVSNPPYIDEED 197 (284)
T ss_pred eccHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhccCc----CCCccEEEECCCCCCcch
Confidence 99999999999998888999999999999999999999999864 9999999876321 24799999982
Q ss_pred ----------------------cccHHHHHHHHccccccCeEEEEEEcCCcHHHHHHHHHHHHHhCCeEeEE
Q 022962 201 ----------------------VAEMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLLQL 250 (289)
Q Consensus 201 ----------------------~~~~~~ll~~~~~~LkpgG~l~~~~g~~~~~ei~~~~~~l~~~g~~~~~~ 250 (289)
...++.+++.+.++|+|||+++++.|..+.+.+..+... ..||..+++
T Consensus 198 ~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~gG~l~~e~g~~q~~~~~~~~~~--~~~~~~~~~ 267 (284)
T TIGR00536 198 LADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKPNGFLVCEIGNWQQKSLKELLRI--KFTWYDVEN 267 (284)
T ss_pred hhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccCCCEEEEEECccHHHHHHHHHHh--cCCCceeEE
Confidence 013678899999999999999999999888877664431 357754444
No 8
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=99.91 E-value=1.3e-23 Score=189.58 Aligned_cols=199 Identities=16% Similarity=0.169 Sum_probs=155.7
Q ss_pred cCCCCCHHHHHHHHHHHHHHHHhhcCcCceeecChHHHHHhhhhhccccCCCCcccccc--ccCCCCCCCC-eEEEEcCC
Q 022962 55 HFETLNTRQQEQIHLYVDALLQWNRKMNLTAVKDVNEVMERHIDDSLAIIPPIKNSYTS--HCDSSCNSNL-KLVDVGTG 131 (289)
Q Consensus 55 ~~~~~~~~~~~~l~~~~~~l~~~n~~~~l~~~~~~~~~~~~~~~~sl~~~~~~~~~~~~--~~~~~~~~~~-~VLDiGcG 131 (289)
....+++++.+.+.....++ .++.|+.|+.+..+|++..+..+..+++|+++||++ +......... +|||||||
T Consensus 44 ~~~~~~~~~~~~~~~~~~rr---~~~~P~~yi~g~~~f~gl~~~v~~~vliPr~dTe~Lve~~l~~~~~~~~~ilDlGTG 120 (280)
T COG2890 44 PEAELSEEELERLRELLERR---AEGEPVAYILGSAEFGGLRFKVDEGVLIPRPDTELLVEAALALLLQLDKRILDLGTG 120 (280)
T ss_pred cccccCHHHHHHHHHHHHHH---HCCCCHhHhhccCeecceeeeeCCCceecCCchHHHHHHHHHhhhhcCCcEEEecCC
Confidence 34556777777666666655 599999999999999999999999999999999965 2111122222 79999999
Q ss_pred CChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCcCCCCceEEEEcC-----------
Q 022962 132 AGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARA----------- 200 (289)
Q Consensus 132 ~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~~~~~fD~V~sn~----------- 200 (289)
||++++.+|...|.++|+|+|+|+.+++.|++|++.+++.++.++++|+.+-. .++||+|+||+
T Consensus 121 SG~iai~la~~~~~~~V~a~Dis~~Al~~A~~Na~~~~l~~~~~~~~dlf~~~-----~~~fDlIVsNPPYip~~~~~~~ 195 (280)
T COG2890 121 SGAIAIALAKEGPDAEVIAVDISPDALALARENAERNGLVRVLVVQSDLFEPL-----RGKFDLIVSNPPYIPAEDPELL 195 (280)
T ss_pred hHHHHHHHHhhCcCCeEEEEECCHHHHHHHHHHHHHcCCccEEEEeeeccccc-----CCceeEEEeCCCCCCCcccccC
Confidence 99999999999999999999999999999999999999877777777776532 35899999992
Q ss_pred ------------------cccHHHHHHHHccccccCeEEEEEEcCCcHHHHHHHHHHHHHhC-CeEeEEeeeecCCCCCc
Q 022962 201 ------------------VAEMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMG-ASLLQLCSVESQSPFGQ 261 (289)
Q Consensus 201 ------------------~~~~~~ll~~~~~~LkpgG~l~~~~g~~~~~ei~~~~~~l~~~g-~~~~~~~~~~~~~~~~~ 261 (289)
..-+..++.++...|+|||.++++.|.++.+.+.++. .+.| +..+... +...+
T Consensus 196 ~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~~~g~l~le~g~~q~~~v~~~~---~~~~~~~~v~~~-----~d~~g 267 (280)
T COG2890 196 PEVVRYEPLLALVGGGDGLEVYRRILGEAPDILKPGGVLILEIGLTQGEAVKALF---EDTGFFEIVETL-----KDLFG 267 (280)
T ss_pred hhhhccCHHHHHccCccHHHHHHHHHHhhHHHcCCCcEEEEEECCCcHHHHHHHH---HhcCCceEEEEE-----ecCCC
Confidence 1236889999999999999999999999988887654 4788 4444443 23444
Q ss_pred eEEEEEEe
Q 022962 262 RTAVVCLK 269 (289)
Q Consensus 262 r~lv~~~k 269 (289)
+..++..+
T Consensus 268 ~~rv~~~~ 275 (280)
T COG2890 268 RDRVVLAK 275 (280)
T ss_pred ceEEEEEE
Confidence 44444443
No 9
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=99.88 E-value=6.2e-22 Score=179.36 Aligned_cols=186 Identities=13% Similarity=0.142 Sum_probs=147.2
Q ss_pred cCCCCCHHHHHHHHHHHHHHHHhhcCcCceeecChHHHHHhhhhhccccCCCCcccccc--ccCC---CCCCCCeEEEEc
Q 022962 55 HFETLNTRQQEQIHLYVDALLQWNRKMNLTAVKDVNEVMERHIDDSLAIIPPIKNSYTS--HCDS---SCNSNLKLVDVG 129 (289)
Q Consensus 55 ~~~~~~~~~~~~l~~~~~~l~~~n~~~~l~~~~~~~~~~~~~~~~sl~~~~~~~~~~~~--~~~~---~~~~~~~VLDiG 129 (289)
...++++++.+++..+.+++. +++.|++|+.+..+|++..+..+..++.|+++|+.+ .... ...++.+|||+|
T Consensus 52 ~~~~~~~~~~~~~~~~~~rr~--~~~~Pl~yi~g~~~f~g~~f~v~~~vlipr~~te~lv~~~l~~~~~~~~~~~vLDlG 129 (284)
T TIGR03533 52 LDARLTPSEKERILELIERRI--EERIPVAYLTNEAWFAGLEFYVDERVLIPRSPIAELIEDGFAPWLEPEPVKRILDLC 129 (284)
T ss_pred ccCCCCHHHHHHHHHHHHHHH--hCCCcHHHHcCCCeecCcEEEECCCCccCCCchHHHHHHHHHHHhccCCCCEEEEEe
Confidence 446778887777777766554 368999999999999999999999999999988743 1111 112357999999
Q ss_pred CCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCC-CEEEEeccccccCCCCcCCCCceEEEEcCc-------
Q 022962 130 TGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLL-NVQIVRGRAETLGKDVSFREQYDVAVARAV------- 201 (289)
Q Consensus 130 cG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~-ni~~~~~d~~~~~~~~~~~~~fD~V~sn~~------- 201 (289)
||+|.+++.++...|+.+|+|+|+|+.+++.|++|++.+++. +++++++|+.+... +++||+|++|+.
T Consensus 130 ~GsG~i~~~la~~~~~~~v~avDis~~al~~A~~n~~~~~~~~~i~~~~~D~~~~~~----~~~fD~Iv~NPPy~~~~~~ 205 (284)
T TIGR03533 130 TGSGCIAIACAYAFPEAEVDAVDISPDALAVAEINIERHGLEDRVTLIQSDLFAALP----GRKYDLIVSNPPYVDAEDM 205 (284)
T ss_pred CchhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhccC----CCCccEEEECCCCCCccch
Confidence 999999999999888899999999999999999999999985 69999999865321 257999999830
Q ss_pred ----------------------ccHHHHHHHHccccccCeEEEEEEcCCcHHHHHHHHHHHHHhCCeEeEE
Q 022962 202 ----------------------AEMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLLQL 250 (289)
Q Consensus 202 ----------------------~~~~~ll~~~~~~LkpgG~l~~~~g~~~~~ei~~~~~~l~~~g~~~~~~ 250 (289)
..++.+++.+.++|+|||+++++.|..+ +++.+ .+...||.....
T Consensus 206 ~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~l~~e~g~~~-~~v~~---~~~~~~~~~~~~ 272 (284)
T TIGR03533 206 ADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNENGVLVVEVGNSM-EALEE---AYPDVPFTWLEF 272 (284)
T ss_pred hhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECcCH-HHHHH---HHHhCCCceeee
Confidence 1246789999999999999999999755 45544 455788876543
No 10
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.87 E-value=5.2e-21 Score=172.06 Aligned_cols=186 Identities=18% Similarity=0.178 Sum_probs=147.0
Q ss_pred cCCCCCHHHHHHHHHHHHHHHHhhcCcCceeecChHHHHHhhhhhccccCCCCcccccc--ccC--CCCCCCCeEEEEcC
Q 022962 55 HFETLNTRQQEQIHLYVDALLQWNRKMNLTAVKDVNEVMERHIDDSLAIIPPIKNSYTS--HCD--SSCNSNLKLVDVGT 130 (289)
Q Consensus 55 ~~~~~~~~~~~~l~~~~~~l~~~n~~~~l~~~~~~~~~~~~~~~~sl~~~~~~~~~~~~--~~~--~~~~~~~~VLDiGc 130 (289)
...++++++.+++..+.+++ .++.|++++.+..+||...+..+..++.|+++|+.+ ... ....++.+|||+||
T Consensus 41 ~~~~~~~~~~~~~~~~~~~~---~~~~p~~~i~g~~~f~~~~~~~~~~~lipr~~te~l~~~~~~~~~~~~~~~vLDiG~ 117 (275)
T PRK09328 41 PEEELTPEELERFRALVARR---AAGEPLQYILGEAEFWGLDFKVSPGVLIPRPETEELVEWALEALLLKEPLRVLDLGT 117 (275)
T ss_pred ccCCCCHHHHHHHHHHHHHH---HcCCCHHHHceeceEcCcEEEECCCceeCCCCcHHHHHHHHHhccccCCCEEEEEcC
Confidence 34566777776666666665 499999999999999999999999999999998854 111 12335679999999
Q ss_pred CCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCcCCCCceEEEEcC----------
Q 022962 131 GAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARA---------- 200 (289)
Q Consensus 131 G~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~~~~~fD~V~sn~---------- 200 (289)
|+|.+++.++...|..+|+|+|+|+.+++.++++++.....+++++++|+.+... +++||+|++|.
T Consensus 118 GsG~~~~~la~~~~~~~v~~iDis~~~l~~a~~n~~~~~~~~i~~~~~d~~~~~~----~~~fD~Iv~npPy~~~~~~~~ 193 (275)
T PRK09328 118 GSGAIALALAKERPDAEVTAVDISPEALAVARRNAKHGLGARVEFLQGDWFEPLP----GGRFDLIVSNPPYIPEADIHL 193 (275)
T ss_pred cHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhCCCCcEEEEEccccCcCC----CCceeEEEECCCcCCcchhhh
Confidence 9999999999998889999999999999999999883334579999999865321 36899999982
Q ss_pred --------------------cccHHHHHHHHccccccCeEEEEEEcCCcHHHHHHHHHHHHHhCCeEeEE
Q 022962 201 --------------------VAEMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLLQL 250 (289)
Q Consensus 201 --------------------~~~~~~ll~~~~~~LkpgG~l~~~~g~~~~~ei~~~~~~l~~~g~~~~~~ 250 (289)
...+..+++.+.++|+|||+++++.|..+.+++..+ +...||..+++
T Consensus 194 ~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~gG~l~~e~g~~~~~~~~~~---l~~~gf~~v~~ 260 (275)
T PRK09328 194 LQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKPGGWLLLEIGYDQGEAVRAL---LAAAGFADVET 260 (275)
T ss_pred CCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhcccCCEEEEEECchHHHHHHHH---HHhCCCceeEE
Confidence 012467888999999999999999988777666554 45789874444
No 11
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.87 E-value=4.3e-21 Score=175.54 Aligned_cols=186 Identities=13% Similarity=0.137 Sum_probs=145.7
Q ss_pred cCCCCCHHHHHHHHHHHHHHHHhhcCcCceeecChHHHHHhhhhhccccCCCCcccccc--ccCC-CCC--CCCeEEEEc
Q 022962 55 HFETLNTRQQEQIHLYVDALLQWNRKMNLTAVKDVNEVMERHIDDSLAIIPPIKNSYTS--HCDS-SCN--SNLKLVDVG 129 (289)
Q Consensus 55 ~~~~~~~~~~~~l~~~~~~l~~~n~~~~l~~~~~~~~~~~~~~~~sl~~~~~~~~~~~~--~~~~-~~~--~~~~VLDiG 129 (289)
...++++++..++..+.+++. +++.|++|+.+..+|++..|..+..++.|+++++.+ .... .++ ...+|||+|
T Consensus 64 ~~~~l~~~~~~~~~~~~~rr~--~~~~Pl~yi~g~~~F~g~~f~v~~~vlipr~~te~lv~~~l~~~~~~~~~~~VLDlG 141 (307)
T PRK11805 64 LDARLTPSEKARILELIERRI--NERIPAAYLTNEAWFCGLEFYVDERVLVPRSPIAELIEDGFAPWLEDPPVTRILDLC 141 (307)
T ss_pred ccCCCCHHHHHHHHHHHHHHH--HCCccHHHHcCcceEcCcEEEECCCCcCCCCchHHHHHHHHHHHhccCCCCEEEEEe
Confidence 345678887777777777664 358999999999999999998888999999988743 1111 111 126899999
Q ss_pred CCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCC-CEEEEeccccccCCCCcCCCCceEEEEcC--------
Q 022962 130 TGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLL-NVQIVRGRAETLGKDVSFREQYDVAVARA-------- 200 (289)
Q Consensus 130 cG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~-ni~~~~~d~~~~~~~~~~~~~fD~V~sn~-------- 200 (289)
||+|.+++.++..+|+.+|+|+|+|+.+++.|++|++.+++. +++++++|+.+... +++||+|++|.
T Consensus 142 ~GsG~iai~la~~~p~~~V~avDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~l~----~~~fDlIvsNPPyi~~~~~ 217 (307)
T PRK11805 142 TGSGCIAIACAYAFPDAEVDAVDISPDALAVAEINIERHGLEDRVTLIESDLFAALP----GRRYDLIVSNPPYVDAEDM 217 (307)
T ss_pred chhhHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEECchhhhCC----CCCccEEEECCCCCCccch
Confidence 999999999999889999999999999999999999999875 59999999865321 25799999983
Q ss_pred ---------------------cccHHHHHHHHccccccCeEEEEEEcCCcHHHHHHHHHHHHHhCCeEeEE
Q 022962 201 ---------------------VAEMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLLQL 250 (289)
Q Consensus 201 ---------------------~~~~~~ll~~~~~~LkpgG~l~~~~g~~~~~ei~~~~~~l~~~g~~~~~~ 250 (289)
...+..+++.+.++|+|||.++++.|..+. ++.. .+...++...+.
T Consensus 218 ~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pgG~l~~E~g~~~~-~~~~---~~~~~~~~~~~~ 284 (307)
T PRK11805 218 ADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTEDGVLVVEVGNSRV-HLEE---AYPDVPFTWLEF 284 (307)
T ss_pred hhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCCCCEEEEEECcCHH-HHHH---HHhhCCCEEEEe
Confidence 012468899999999999999999987643 3444 455677766544
No 12
>KOG2904 consensus Predicted methyltransferase [General function prediction only]
Probab=99.87 E-value=4.8e-21 Score=167.24 Aligned_cols=191 Identities=14% Similarity=0.135 Sum_probs=149.3
Q ss_pred cchhhhhhccCCCCcccCCccchhhhhhchhhhhhhccCCCCCHHHHHHHHHHHHHHHHhhcCcCceeecChHHHHHhhh
Q 022962 18 FSARTLIKHLPSSNQNTFCPHRTRAKTLTTTRIVNSSHFETLNTRQQEQIHLYVDALLQWNRKMNLTAVKDVNEVMERHI 97 (289)
Q Consensus 18 ~~~~~~~~h~~~~~~~~~~~~r~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~n~~~~l~~~~~~~~~~~~~~ 97 (289)
++...+++|+...+++-++.. ....++...|.+-+..+...+. +++|++|+.+.++|....+
T Consensus 56 ~~~~~i~shvL~~Kf~si~ds---------------~~~~pl~~~ql~~i~~~~~~R~---~r~PlQYIlg~~~F~~l~l 117 (328)
T KOG2904|consen 56 LSYKWIVSHVLPDKFWSIEDS---------------IVDDPLVILQLESIRWACLQRY---KRMPLQYILGSQPFGDLDL 117 (328)
T ss_pred hhhHHHHHhhhhhhhccccch---------------hhccccchhHHHHHHHHHHHHH---hcCChhheeccCccCCceE
Confidence 566778888888776666551 3567777777666666666555 8999999999999999999
Q ss_pred hhccccCCCCcccccc-------ccCCCCCCCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCC
Q 022962 98 DDSLAIIPPIKNSYTS-------HCDSSCNSNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQL 170 (289)
Q Consensus 98 ~~sl~~~~~~~~~~~~-------~~~~~~~~~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l 170 (289)
.....+++|+|+||.. +.....-++..+||+|||||++++.++...|.+.|+|||.|+.++..|.+|++++++
T Consensus 118 ~~~pgVlIPRpETEE~V~~Vid~~~~~~~~~~~~ildlgtGSGaIslsll~~L~~~~v~AiD~S~~Ai~La~eN~qr~~l 197 (328)
T KOG2904|consen 118 VCKPGVLIPRPETEEWVEAVIDALNNSEHSKHTHILDLGTGSGAISLSLLHGLPQCTVTAIDVSKAAIKLAKENAQRLKL 197 (328)
T ss_pred EecCCeeecCccHHHHHHHHHHHHhhhhhcccceEEEecCCccHHHHHHHhcCCCceEEEEeccHHHHHHHHHHHHHHhh
Confidence 9999999999999932 111122235689999999999999999888999999999999999999999999998
Q ss_pred CC-EEEEecccccc--CCCCcCCCCceEEEEcC------------------------------cccHHHHHHHHcccccc
Q 022962 171 LN-VQIVRGRAETL--GKDVSFREQYDVAVARA------------------------------VAEMRILAEYCLPLVRV 217 (289)
Q Consensus 171 ~n-i~~~~~d~~~~--~~~~~~~~~fD~V~sn~------------------------------~~~~~~ll~~~~~~Lkp 217 (289)
.+ +.+++.+.+.- .......+++|+++||. ...+..+...+.++|+|
T Consensus 198 ~g~i~v~~~~me~d~~~~~~l~~~~~dllvsNPPYI~~dD~~~l~~eV~~yEp~lALdGg~eG~~~~~~~~~~a~R~Lq~ 277 (328)
T KOG2904|consen 198 SGRIEVIHNIMESDASDEHPLLEGKIDLLVSNPPYIRKDDNRQLKPEVRLYEPKLALDGGLEGYDNLVHYWLLATRMLQP 277 (328)
T ss_pred cCceEEEecccccccccccccccCceeEEecCCCcccccchhhcCchheecCchhhhccccchhHHHHHHHHhhHhhccc
Confidence 75 77776544431 11112347899999992 12456777889999999
Q ss_pred CeEEEEEEc
Q 022962 218 GGLFVAAKG 226 (289)
Q Consensus 218 gG~l~~~~g 226 (289)
||.+.++.+
T Consensus 278 gg~~~le~~ 286 (328)
T KOG2904|consen 278 GGFEQLELV 286 (328)
T ss_pred CCeEEEEec
Confidence 999999886
No 13
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=99.86 E-value=4.4e-21 Score=168.04 Aligned_cols=144 Identities=20% Similarity=0.223 Sum_probs=127.5
Q ss_pred HHHHHHHHHHHHHHhhcCcCceeecChHHHHHhhhhhccccCCCCccccccccCCCCCCCCeEEEEcCCCChHHHHHHHH
Q 022962 63 QQEQIHLYVDALLQWNRKMNLTAVKDVNEVMERHIDDSLAIIPPIKNSYTSHCDSSCNSNLKLVDVGTGAGLPGLVLAIA 142 (289)
Q Consensus 63 ~~~~l~~~~~~l~~~n~~~~l~~~~~~~~~~~~~~~~sl~~~~~~~~~~~~~~~~~~~~~~~VLDiGcG~G~~~l~la~~ 142 (289)
..+.+..+.+.+..+...+|..-..+.+..|.+.+...+... +|.+|||||||||.+++.+++.
T Consensus 9 k~~~v~~vF~~ia~~YD~~n~~~S~g~~~~Wr~~~i~~~~~~----------------~g~~vLDva~GTGd~a~~~~k~ 72 (238)
T COG2226 9 KQEKVQKVFDKVAKKYDLMNDLMSFGLHRLWRRALISLLGIK----------------PGDKVLDVACGTGDMALLLAKS 72 (238)
T ss_pred cHHHHHHHHHhhHHHHHhhcccccCcchHHHHHHHHHhhCCC----------------CCCEEEEecCCccHHHHHHHHh
Confidence 346778888888888888887777788899998887766543 3889999999999999999999
Q ss_pred CCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCcCCCCceEEEEc----CcccHHHHHHHHccccccC
Q 022962 143 CPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVAR----AVAEMRILAEYCLPLVRVG 218 (289)
Q Consensus 143 ~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~~~~~fD~V~sn----~~~~~~~ll~~~~~~Lkpg 218 (289)
.+.++|+|+|+|+.|++.+++.+...+..+++++++|+++++.+ +++||+|++. .+.+++..|++++|+||||
T Consensus 73 ~g~g~v~~~D~s~~ML~~a~~k~~~~~~~~i~fv~~dAe~LPf~---D~sFD~vt~~fglrnv~d~~~aL~E~~RVlKpg 149 (238)
T COG2226 73 VGTGEVVGLDISESMLEVAREKLKKKGVQNVEFVVGDAENLPFP---DNSFDAVTISFGLRNVTDIDKALKEMYRVLKPG 149 (238)
T ss_pred cCCceEEEEECCHHHHHHHHHHhhccCccceEEEEechhhCCCC---CCccCEEEeeehhhcCCCHHHHHHHHHHhhcCC
Confidence 88899999999999999999999998888899999999999976 4899999986 5789999999999999999
Q ss_pred eEEEEEE
Q 022962 219 GLFVAAK 225 (289)
Q Consensus 219 G~l~~~~ 225 (289)
|++++..
T Consensus 150 G~~~vle 156 (238)
T COG2226 150 GRLLVLE 156 (238)
T ss_pred eEEEEEE
Confidence 9998754
No 14
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=99.86 E-value=6.4e-21 Score=168.96 Aligned_cols=188 Identities=16% Similarity=0.174 Sum_probs=150.2
Q ss_pred ccCCCCCHHHHHHHHHHHHHHHHhhcCcCceeecChHHHHHhhhhhccccCCCCcccccc--ccCCCC-CCCCeEEEEcC
Q 022962 54 SHFETLNTRQQEQIHLYVDALLQWNRKMNLTAVKDVNEVMERHIDDSLAIIPPIKNSYTS--HCDSSC-NSNLKLVDVGT 130 (289)
Q Consensus 54 ~~~~~~~~~~~~~l~~~~~~l~~~n~~~~l~~~~~~~~~~~~~~~~sl~~~~~~~~~~~~--~~~~~~-~~~~~VLDiGc 130 (289)
....+++.++.+++..|.+.+. .+.|++++.+..++|..++..+...+.|+++++.+ +....+ ..+.+|||+||
T Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~---~~~pl~~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~~l~~~~~~~~~ilDig~ 96 (251)
T TIGR03534 20 HPEKELTPEELARFEALLARRA---KGEPVAYILGEREFYGLDFKVSPGVLIPRPDTEELVEAALERLKKGPLRVLDLGT 96 (251)
T ss_pred cccCCCCHHHHHHHHHHHHHHH---cCCCHHHHcccceEeceEEEECCCcccCCCChHHHHHHHHHhcccCCCeEEEEeC
Confidence 3456778888888888888765 88899999999999999998888888888877633 111111 23569999999
Q ss_pred CCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCcCCCCceEEEEcCc---------
Q 022962 131 GAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARAV--------- 201 (289)
Q Consensus 131 G~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~~~~~fD~V~sn~~--------- 201 (289)
|+|.+++.++...|..+|+|+|+|+.+++.++++++.+++++++++++|+.+... .++||+|++|..
T Consensus 97 G~G~~~~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~----~~~fD~Vi~npPy~~~~~~~~ 172 (251)
T TIGR03534 97 GSGAIALALAKERPDARVTAVDISPEALAVARKNAARLGLDNVTFLQSDWFEPLP----GGKFDLIVSNPPYIPEADIHL 172 (251)
T ss_pred cHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhccCc----CCceeEEEECCCCCchhhhhh
Confidence 9999999999988889999999999999999999999998889999999976321 368999999731
Q ss_pred ---------------------ccHHHHHHHHccccccCeEEEEEEcCCcHHHHHHHHHHHHHhCCeEeEEe
Q 022962 202 ---------------------AEMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLLQLC 251 (289)
Q Consensus 202 ---------------------~~~~~ll~~~~~~LkpgG~l~~~~g~~~~~ei~~~~~~l~~~g~~~~~~~ 251 (289)
..+..+++.+.++|+|||.++++.+..+.+++.++ +++.||..+++.
T Consensus 173 ~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~~~~~~~~~~~~~~~~~---l~~~gf~~v~~~ 240 (251)
T TIGR03534 173 LDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGWLLLEIGYDQGEAVRAL---FEAAGFADVETR 240 (251)
T ss_pred cChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccCCEEEEEECccHHHHHHHH---HHhCCCCceEEE
Confidence 11347889999999999999999887777666554 558899766553
No 15
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=99.85 E-value=2.3e-20 Score=163.68 Aligned_cols=146 Identities=15% Similarity=0.195 Sum_probs=123.3
Q ss_pred CCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCC-CEEEEeccccccCCCCcCCCCceEEEEc
Q 022962 121 SNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLL-NVQIVRGRAETLGKDVSFREQYDVAVAR 199 (289)
Q Consensus 121 ~~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~-ni~~~~~d~~~~~~~~~~~~~fD~V~sn 199 (289)
...+|||+|||+|.+++.+|...+.++|+|||+++++.+.|++|.+.++++ +|+++++|+.++..... ..+||+|+||
T Consensus 44 ~~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~~a~~A~~nv~ln~l~~ri~v~~~Di~~~~~~~~-~~~fD~Ii~N 122 (248)
T COG4123 44 KKGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVALNPLEERIQVIEADIKEFLKALV-FASFDLIICN 122 (248)
T ss_pred cCCeEEEecCCcCHHHHHHhccCCCCcEEEEEeCHHHHHHHHHHHHhCcchhceeEehhhHHHhhhccc-ccccCEEEeC
Confidence 378999999999999999999888899999999999999999999998885 69999999999865432 2479999999
Q ss_pred C----------------------cccHHHHHHHHccccccCeEEEEEEcCCcHHHHHHHHHHHHHhCCeEeEEeeeecCC
Q 022962 200 A----------------------VAEMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLLQLCSVESQS 257 (289)
Q Consensus 200 ~----------------------~~~~~~ll~~~~~~LkpgG~l~~~~g~~~~~ei~~~~~~l~~~g~~~~~~~~~~~~~ 257 (289)
+ ..+++.+++.+..+|||||.+++++.+... .++...++.++|...+++++ +|.
T Consensus 123 PPyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~~V~r~erl---~ei~~~l~~~~~~~k~i~~V-~p~ 198 (248)
T COG4123 123 PPYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLAFVHRPERL---AEIIELLKSYNLEPKRIQFV-YPK 198 (248)
T ss_pred CCCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCCCEEEEEecHHHH---HHHHHHHHhcCCCceEEEEe-cCC
Confidence 3 125799999999999999999999876554 44555777999999999977 688
Q ss_pred CCCceEEEEEEecC
Q 022962 258 PFGQRTAVVCLKSR 271 (289)
Q Consensus 258 ~~~~r~lv~~~k~~ 271 (289)
.++..++++++..+
T Consensus 199 ~~k~A~~vLv~~~k 212 (248)
T COG4123 199 IGKAANRVLVEAIK 212 (248)
T ss_pred CCCcceEEEEEEec
Confidence 88777777777653
No 16
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=99.84 E-value=2.2e-20 Score=166.40 Aligned_cols=191 Identities=15% Similarity=0.096 Sum_probs=143.3
Q ss_pred ccchhhhhhchhhhhhhccCCCCCHHHHHHHHHHHHHHHHhhcCcCceeecChHHHHHhhhhhccccCCCCcccccc--c
Q 022962 37 PHRTRAKTLTTTRIVNSSHFETLNTRQQEQIHLYVDALLQWNRKMNLTAVKDVNEVMERHIDDSLAIIPPIKNSYTS--H 114 (289)
Q Consensus 37 ~~r~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~n~~~~l~~~~~~~~~~~~~~~~sl~~~~~~~~~~~~--~ 114 (289)
.-+..++.|..+.. . .+.+..+.+++ .++.|++|+.+..+|++..+..+..++.|+++|+.+ .
T Consensus 12 ~~~~~a~~l~~~~~---------~---~~~~~~~~~rr---~~~~Pl~yi~g~~~f~g~~~~v~~~vf~pr~~Te~Lv~~ 76 (251)
T TIGR03704 12 FAEDEAALLVDAAR---------T---PGELAAMVDRR---VAGLPLEHVLGWAEFCGLRIAVDPGVFVPRRRTEFLVDE 76 (251)
T ss_pred CHHHHHHHHHHhcc---------C---HHHHHHHHHHH---HcCCCHHHhcccCeEcCeEEEECCCCcCCCccHHHHHHH
Confidence 34556666655541 1 24455555544 499999999999999999888888888888888854 1
Q ss_pred cCCC---CCCCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCcCCC
Q 022962 115 CDSS---CNSNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFRE 191 (289)
Q Consensus 115 ~~~~---~~~~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~~~~ 191 (289)
.... ...+.+|||+|||+|.+++.++...++.+|+|+|+|+.+++.|++|++.++ ++++++|+.+.... ...+
T Consensus 77 ~l~~~~~~~~~~~vLDlg~GsG~i~l~la~~~~~~~v~~vDis~~al~~A~~N~~~~~---~~~~~~D~~~~l~~-~~~~ 152 (251)
T TIGR03704 77 AAALARPRSGTLVVVDLCCGSGAVGAALAAALDGIELHAADIDPAAVRCARRNLADAG---GTVHEGDLYDALPT-ALRG 152 (251)
T ss_pred HHHhhcccCCCCEEEEecCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcC---CEEEEeechhhcch-hcCC
Confidence 1111 122458999999999999999988888899999999999999999998876 47889998763221 1235
Q ss_pred CceEEEEcCc------------------------------ccHHHHHHHHccccccCeEEEEEEcCCcHHHHHHHHHHHH
Q 022962 192 QYDVAVARAV------------------------------AEMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQ 241 (289)
Q Consensus 192 ~fD~V~sn~~------------------------------~~~~~ll~~~~~~LkpgG~l~~~~g~~~~~ei~~~~~~l~ 241 (289)
+||+|++|.. .-++.+++.+.++|+|||+++++.+.++.+++.. .++
T Consensus 153 ~fDlVv~NPPy~~~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~gG~l~l~~~~~~~~~v~~---~l~ 229 (251)
T TIGR03704 153 RVDILAANAPYVPTDAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAPGGHLLVETSERQAPLAVE---AFA 229 (251)
T ss_pred CEeEEEECCCCCCchhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECcchHHHHHH---HHH
Confidence 7999999931 0146888899999999999999999877766544 556
Q ss_pred HhCCeEeE
Q 022962 242 LMGASLLQ 249 (289)
Q Consensus 242 ~~g~~~~~ 249 (289)
+.||...-
T Consensus 230 ~~g~~~~~ 237 (251)
T TIGR03704 230 RAGLIARV 237 (251)
T ss_pred HCCCCcee
Confidence 88886543
No 17
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=99.83 E-value=1.9e-20 Score=164.81 Aligned_cols=146 Identities=17% Similarity=0.194 Sum_probs=84.4
Q ss_pred HHHHHHHHHHHHHHHHhhcCcCceeecChHHHHHhhhhhccccCCCCccccccccCCCCCCCCeEEEEcCCCChHHHHHH
Q 022962 61 TRQQEQIHLYVDALLQWNRKMNLTAVKDVNEVMERHIDDSLAIIPPIKNSYTSHCDSSCNSNLKLVDVGTGAGLPGLVLA 140 (289)
Q Consensus 61 ~~~~~~l~~~~~~l~~~n~~~~l~~~~~~~~~~~~~~~~sl~~~~~~~~~~~~~~~~~~~~~~~VLDiGcG~G~~~l~la 140 (289)
+...+.+..+++.+...+...|-.-..+.+..|.+.+.+.... .++.+|||+|||||.++..++
T Consensus 3 ~~k~~~v~~~Fd~ia~~YD~~n~~ls~g~~~~wr~~~~~~~~~----------------~~g~~vLDv~~GtG~~~~~l~ 66 (233)
T PF01209_consen 3 EAKEQYVRKMFDRIAPRYDRMNDLLSFGQDRRWRRKLIKLLGL----------------RPGDRVLDVACGTGDVTRELA 66 (233)
T ss_dssp ----------------------------------SHHHHHHT------------------S--EEEEET-TTSHHHHHHG
T ss_pred ccHHHHHHHHHHHHHHHhCCCccccCCcHHHHHHHHHHhccCC----------------CCCCEEEEeCCChHHHHHHHH
Confidence 3445667788888887777777766667788888877664432 137899999999999999998
Q ss_pred HHC-CCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCcCCCCceEEEEc----CcccHHHHHHHHcccc
Q 022962 141 IAC-PDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVAR----AVAEMRILAEYCLPLV 215 (289)
Q Consensus 141 ~~~-p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~~~~~fD~V~sn----~~~~~~~ll~~~~~~L 215 (289)
+.. |.++|+|+|+|+.|++.|++..+..+..||+++++|+++++.+ +++||+|++. .+.++...++++.|+|
T Consensus 67 ~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~~~~i~~v~~da~~lp~~---d~sfD~v~~~fglrn~~d~~~~l~E~~RVL 143 (233)
T PF01209_consen 67 RRVGPNGKVVGVDISPGMLEVARKKLKREGLQNIEFVQGDAEDLPFP---DNSFDAVTCSFGLRNFPDRERALREMYRVL 143 (233)
T ss_dssp GGSS---EEEEEES-HHHHHHHHHHHHHTT--SEEEEE-BTTB--S----TT-EEEEEEES-GGG-SSHHHHHHHHHHHE
T ss_pred HHCCCccEEEEecCCHHHHHHHHHHHHhhCCCCeeEEEcCHHHhcCC---CCceeEEEHHhhHHhhCCHHHHHHHHHHHc
Confidence 764 5789999999999999999999998888999999999999875 4899999976 4668899999999999
Q ss_pred ccCeEEEEEE
Q 022962 216 RVGGLFVAAK 225 (289)
Q Consensus 216 kpgG~l~~~~ 225 (289)
||||++++..
T Consensus 144 kPGG~l~ile 153 (233)
T PF01209_consen 144 KPGGRLVILE 153 (233)
T ss_dssp EEEEEEEEEE
T ss_pred CCCeEEEEee
Confidence 9999998764
No 18
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=99.81 E-value=3.7e-18 Score=149.83 Aligned_cols=142 Identities=20% Similarity=0.178 Sum_probs=112.0
Q ss_pred CCCeEEEEcCCCChHHHHHHHHC-CCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCcCCCCceEEEEc
Q 022962 121 SNLKLVDVGTGAGLPGLVLAIAC-PDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVAR 199 (289)
Q Consensus 121 ~~~~VLDiGcG~G~~~l~la~~~-p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~~~~~fD~V~sn 199 (289)
++.+|||+|||+|.++..++... ++.+|+|+|+|+.+++.++++.+..++++++++++|+++++.. +++||+|+++
T Consensus 45 ~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~---~~~fD~V~~~ 121 (231)
T TIGR02752 45 AGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAGLHNVELVHGNAMELPFD---DNSFDYVTIG 121 (231)
T ss_pred CCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcCCCceEEEEechhcCCCC---CCCccEEEEe
Confidence 47899999999999999999875 6789999999999999999999888888899999999887543 3789999987
Q ss_pred ----CcccHHHHHHHHccccccCeEEEEEEcCC-cHH---------------------------------------HHHH
Q 022962 200 ----AVAEMRILAEYCLPLVRVGGLFVAAKGHD-PQE---------------------------------------EVKN 235 (289)
Q Consensus 200 ----~~~~~~~ll~~~~~~LkpgG~l~~~~g~~-~~~---------------------------------------ei~~ 235 (289)
...++..+++++.++|+|||++++..... ... ...+
T Consensus 122 ~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (231)
T TIGR02752 122 FGLRNVPDYMQVLREMYRVVKPGGKVVCLETSQPTIPGFKQLYFFYFKYIMPLFGKLFAKSYKEYSWLQESTRDFPGMDE 201 (231)
T ss_pred cccccCCCHHHHHHHHHHHcCcCeEEEEEECCCCCChHHHHHHHHHHcChhHHhhHHhcCCHHHHHHHHHHHHHcCCHHH
Confidence 35677899999999999999998764321 000 0134
Q ss_pred HHHHHHHhCCeEeEEeeeecCCCCCceEEEEEEe
Q 022962 236 SERAVQLMGASLLQLCSVESQSPFGQRTAVVCLK 269 (289)
Q Consensus 236 ~~~~l~~~g~~~~~~~~~~~~~~~~~r~lv~~~k 269 (289)
+...++++||...++..+ ..|....++..|
T Consensus 202 l~~~l~~aGf~~~~~~~~----~~g~~~~~~~~~ 231 (231)
T TIGR02752 202 LAEMFQEAGFKDVEVKSY----TGGVAAMHMGFK 231 (231)
T ss_pred HHHHHHHcCCCeeEEEEc----ccceEEEEEEEC
Confidence 566788999998887644 346666666543
No 19
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=99.80 E-value=3.6e-18 Score=156.84 Aligned_cols=181 Identities=18% Similarity=0.232 Sum_probs=133.2
Q ss_pred ccCCCCCHHHHHHHHHHHHHHHHhhcC--------cCceeecChHHHHHhhhhhccccCCCCccccccccCCCCCCCCeE
Q 022962 54 SHFETLNTRQQEQIHLYVDALLQWNRK--------MNLTAVKDVNEVMERHIDDSLAIIPPIKNSYTSHCDSSCNSNLKL 125 (289)
Q Consensus 54 ~~~~~~~~~~~~~l~~~~~~l~~~n~~--------~~l~~~~~~~~~~~~~~~~sl~~~~~~~~~~~~~~~~~~~~~~~V 125 (289)
.....+++.+.+.+....+ ..|+.. +|.++..-..+.+.+++.++.....+ .++.+|
T Consensus 71 ~~~~s~~~~e~~~f~~~a~--~WW~~~g~~~~lh~~N~~R~~~i~~~l~~~~~~~~~~~~~-------------~~g~~I 135 (322)
T PLN02396 71 STTTSLNEDELAKFSAIAD--TWWHSEGPFKPLHQMNPTRLAFIRSTLCRHFSKDPSSAKP-------------FEGLKF 135 (322)
T ss_pred CCCCCCCHHHHHHHHHHHH--HhcCCCCCchHHHHhChHHHHHHHHHHHHHhccchhhccC-------------CCCCEE
Confidence 3446889999999999988 556643 33444444444455555554432211 136799
Q ss_pred EEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCC-CCEEEEeccccccCCCCcCCCCceEEEEcC----
Q 022962 126 VDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQL-LNVQIVRGRAETLGKDVSFREQYDVAVARA---- 200 (289)
Q Consensus 126 LDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l-~ni~~~~~d~~~~~~~~~~~~~fD~V~sn~---- 200 (289)
||||||+|.++..+|+ .+.+|+|||+++++++.|+++++..+. .+++++++|+++++.. +++||+|++..
T Consensus 136 LDIGCG~G~~s~~La~--~g~~V~GID~s~~~i~~Ar~~~~~~~~~~~i~~~~~dae~l~~~---~~~FD~Vi~~~vLeH 210 (322)
T PLN02396 136 IDIGCGGGLLSEPLAR--MGATVTGVDAVDKNVKIARLHADMDPVTSTIEYLCTTAEKLADE---GRKFDAVLSLEVIEH 210 (322)
T ss_pred EEeeCCCCHHHHHHHH--cCCEEEEEeCCHHHHHHHHHHHHhcCcccceeEEecCHHHhhhc---cCCCCEEEEhhHHHh
Confidence 9999999999998885 368999999999999999998776554 4799999999987643 36899999985
Q ss_pred cccHHHHHHHHccccccCeEEEEEEcCCc---------------------------HHHHHHHHHHHHHhCCeEeEEeee
Q 022962 201 VAEMRILAEYCLPLVRVGGLFVAAKGHDP---------------------------QEEVKNSERAVQLMGASLLQLCSV 253 (289)
Q Consensus 201 ~~~~~~ll~~~~~~LkpgG~l~~~~g~~~---------------------------~~ei~~~~~~l~~~g~~~~~~~~~ 253 (289)
+.+...+++++.++|||||.+++...... .-...++.+.++.+||++.++.-+
T Consensus 211 v~d~~~~L~~l~r~LkPGG~liist~nr~~~~~~~~i~~~eyi~~~lp~gth~~~~f~tp~eL~~lL~~aGf~i~~~~G~ 290 (322)
T PLN02396 211 VANPAEFCKSLSALTIPNGATVLSTINRTMRAYASTIVGAEYILRWLPKGTHQWSSFVTPEELSMILQRASVDVKEMAGF 290 (322)
T ss_pred cCCHHHHHHHHHHHcCCCcEEEEEECCcCHHHHHHhhhhHHHHHhcCCCCCcCccCCCCHHHHHHHHHHcCCeEEEEeee
Confidence 56789999999999999999997642110 001245667788999999988766
Q ss_pred e
Q 022962 254 E 254 (289)
Q Consensus 254 ~ 254 (289)
.
T Consensus 291 ~ 291 (322)
T PLN02396 291 V 291 (322)
T ss_pred E
Confidence 4
No 20
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=99.78 E-value=2e-17 Score=148.27 Aligned_cols=102 Identities=16% Similarity=0.146 Sum_probs=85.8
Q ss_pred CCCeEEEEcCCCChHHHHHHHHC-CCCEEEEEeCChHHHHHHHHHHH---HcCCCCEEEEeccccccCCCCcCCCCceEE
Q 022962 121 SNLKLVDVGTGAGLPGLVLAIAC-PDWKVTLLESMNKRCVFLEHAVS---LTQLLNVQIVRGRAETLGKDVSFREQYDVA 196 (289)
Q Consensus 121 ~~~~VLDiGcG~G~~~l~la~~~-p~~~V~~iD~s~~~l~~a~~~~~---~~~l~ni~~~~~d~~~~~~~~~~~~~fD~V 196 (289)
++.+|||+|||+|.++..++... +.++|+|+|+|++|++.|+++.. ....++++++++|+++++.+ +++||+|
T Consensus 73 ~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~lp~~---~~sfD~V 149 (261)
T PLN02233 73 MGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDATDLPFD---DCYFDAI 149 (261)
T ss_pred CCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEcccccCCCC---CCCEeEE
Confidence 37799999999999999988764 56899999999999999987653 22345799999999988754 3789999
Q ss_pred EEcC----cccHHHHHHHHccccccCeEEEEEE
Q 022962 197 VARA----VAEMRILAEYCLPLVRVGGLFVAAK 225 (289)
Q Consensus 197 ~sn~----~~~~~~ll~~~~~~LkpgG~l~~~~ 225 (289)
+++. +.++..+++++.++|||||++++..
T Consensus 150 ~~~~~l~~~~d~~~~l~ei~rvLkpGG~l~i~d 182 (261)
T PLN02233 150 TMGYGLRNVVDRLKAMQEMYRVLKPGSRVSILD 182 (261)
T ss_pred EEecccccCCCHHHHHHHHHHHcCcCcEEEEEE
Confidence 9873 5678999999999999999998754
No 21
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=99.78 E-value=3.3e-18 Score=133.00 Aligned_cols=99 Identities=22% Similarity=0.307 Sum_probs=84.9
Q ss_pred CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCC-CCEEEEeccc-cccCCCCcCCCCceEEEEc
Q 022962 122 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQL-LNVQIVRGRA-ETLGKDVSFREQYDVAVAR 199 (289)
Q Consensus 122 ~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l-~ni~~~~~d~-~~~~~~~~~~~~fD~V~sn 199 (289)
+.+|||||||+|..++.+++.+++.+|+|+|+|+.+++.+++++...+. ++++++++|+ .... ..++||+|++.
T Consensus 2 ~~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~----~~~~~D~v~~~ 77 (112)
T PF12847_consen 2 GGRVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEIARERAAEEGLSDRITFVQGDAEFDPD----FLEPFDLVICS 77 (112)
T ss_dssp TCEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCCHGGTT----TSSCEEEEEEC
T ss_pred CCEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECccccCcc----cCCCCCEEEEC
Confidence 7799999999999999999977899999999999999999999966554 5799999999 3332 23679999998
Q ss_pred C-----c---ccHHHHHHHHccccccCeEEEEE
Q 022962 200 A-----V---AEMRILAEYCLPLVRVGGLFVAA 224 (289)
Q Consensus 200 ~-----~---~~~~~ll~~~~~~LkpgG~l~~~ 224 (289)
. . .+...+++.+.+.|+|||++++.
T Consensus 78 ~~~~~~~~~~~~~~~~l~~~~~~L~pgG~lvi~ 110 (112)
T PF12847_consen 78 GFTLHFLLPLDERRRVLERIRRLLKPGGRLVIN 110 (112)
T ss_dssp SGSGGGCCHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred CCccccccchhHHHHHHHHHHHhcCCCcEEEEE
Confidence 7 2 23468899999999999999875
No 22
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=99.77 E-value=1.9e-17 Score=138.56 Aligned_cols=127 Identities=20% Similarity=0.272 Sum_probs=112.1
Q ss_pred CCCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCcCCCCceEEEEc
Q 022962 120 NSNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVAR 199 (289)
Q Consensus 120 ~~~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~~~~~fD~V~sn 199 (289)
.++++++|||||||.+++.+|...|.++|+|||.++++++..++|++++|.+|++++.+++.+..... .+||.|+..
T Consensus 33 ~~g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~fg~~n~~vv~g~Ap~~L~~~---~~~daiFIG 109 (187)
T COG2242 33 RPGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIERNAARFGVDNLEVVEGDAPEALPDL---PSPDAIFIG 109 (187)
T ss_pred CCCCEEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCCcEEEEeccchHhhcCC---CCCCEEEEC
Confidence 35889999999999999999988999999999999999999999999999999999999998864421 279999999
Q ss_pred CcccHHHHHHHHccccccCeEEEEEEcCCcHHHHHHHHHHHHHhCC-eEeEEe
Q 022962 200 AVAEMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGA-SLLQLC 251 (289)
Q Consensus 200 ~~~~~~~ll~~~~~~LkpgG~l~~~~g~~~~~ei~~~~~~l~~~g~-~~~~~~ 251 (289)
.-.+++.+++.+...|||||++++- ....+....+.+.+++.|+ +++++.
T Consensus 110 Gg~~i~~ile~~~~~l~~ggrlV~n--aitlE~~~~a~~~~~~~g~~ei~~v~ 160 (187)
T COG2242 110 GGGNIEEILEAAWERLKPGGRLVAN--AITLETLAKALEALEQLGGREIVQVQ 160 (187)
T ss_pred CCCCHHHHHHHHHHHcCcCCeEEEE--eecHHHHHHHHHHHHHcCCceEEEEE
Confidence 8899999999999999999999863 4566777788888999999 666554
No 23
>PLN02672 methionine S-methyltransferase
Probab=99.76 E-value=3.4e-18 Score=175.97 Aligned_cols=255 Identities=13% Similarity=0.111 Sum_probs=170.0
Q ss_pred ccchhhhhhccCCCCcccCCccchhhhhhchhhhhhhccCCCCCHHHHHHHHHHHHHHHHhh--------------cCcC
Q 022962 17 PFSARTLIKHLPSSNQNTFCPHRTRAKTLTTTRIVNSSHFETLNTRQQEQIHLYVDALLQWN--------------RKMN 82 (289)
Q Consensus 17 ~~~~~~~~~h~~~~~~~~~~~~r~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~n--------------~~~~ 82 (289)
..+|..|+.|-+.+....|..-|...+.|... -+..+...+..-.+.+..-. ..+-
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (1082)
T PLN02672 5 DAEVDEFLDQCKQSGDAAYGAFKGVLERLEDP----------TTRSDARKLLSAVEKRVAASEAGEDCFATYHFRIHDLV 74 (1082)
T ss_pred HHHHHHHHHHhhcCcHHHHHHHHHHHHHhcCc----------cccHHHHHHHHHHHHHhcccCcccchhhhcceEEeeEE
Confidence 45777888888888877777655433333222 22222222221111111000 1122
Q ss_pred ceeecChHHHHHhhhhhccccCCCCcccccc-ccCCCCC----CCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHH
Q 022962 83 LTAVKDVNEVMERHIDDSLAIIPPIKNSYTS-HCDSSCN----SNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKR 157 (289)
Q Consensus 83 l~~~~~~~~~~~~~~~~sl~~~~~~~~~~~~-~~~~~~~----~~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~ 157 (289)
+....|..+||+..+.....+++|+++||.+ ......+ ++.+|||+|||+|++++.++..+|..+|+|+|+|+.+
T Consensus 75 ~~~~~G~~~F~~l~~~V~p~VLIPRpeTE~lve~L~~~~~~~~~~~~VLDlG~GSG~Iai~La~~~~~~~v~avDis~~A 154 (1082)
T PLN02672 75 LDDYEGFRNRKKLTMMEIPSIFIPEDWSFTFYEGLNRHPDSIFRDKTVAELGCGNGWISIAIAEKWLPSKVYGLDINPRA 154 (1082)
T ss_pred EcCCCCeEEecCCceeeCCCcccCchhHHHHHHHHHhcccccCCCCEEEEEecchHHHHHHHHHHCCCCEEEEEECCHHH
Confidence 3333577899999999999999999999965 1111111 2468999999999999999999888899999999999
Q ss_pred HHHHHHHHHHcCC----------------CCEEEEeccccccCCCCcCCCCceEEEEcC--------------cc-----
Q 022962 158 CVFLEHAVSLTQL----------------LNVQIVRGRAETLGKDVSFREQYDVAVARA--------------VA----- 202 (289)
Q Consensus 158 l~~a~~~~~~~~l----------------~ni~~~~~d~~~~~~~~~~~~~fD~V~sn~--------------~~----- 202 (289)
++.|++|++.+++ ++++++++|+.+.... ...+||+|+||. +.
T Consensus 155 l~~A~~Na~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~~~~~--~~~~fDlIVSNPPYI~~~e~~~l~~eV~~~ep~ 232 (1082)
T PLN02672 155 VKVAWINLYLNALDDDGLPVYDGEGKTLLDRVEFYESDLLGYCRD--NNIELDRIVGCIPQILNPNPEAMSKLVTENASE 232 (1082)
T ss_pred HHHHHHHHHHcCcccccccccccccccccccEEEEECchhhhccc--cCCceEEEEECCCcCCCcchhhcChhhhhcccc
Confidence 9999999998653 3699999999765321 113699999992 10
Q ss_pred -----------------------cHHHHHHHHccccccCeEEEEEEcCCcHHHHH-HHHHHHHHhCCeEeEEeeee---c
Q 022962 203 -----------------------EMRILAEYCLPLVRVGGLFVAAKGHDPQEEVK-NSERAVQLMGASLLQLCSVE---S 255 (289)
Q Consensus 203 -----------------------~~~~ll~~~~~~LkpgG~l~~~~g~~~~~ei~-~~~~~l~~~g~~~~~~~~~~---~ 255 (289)
-++.+++++.++|+|||.++++.|.++.+.+. .+++ ..||...+++... .
T Consensus 233 ~~~~~~~p~~AL~g~~~g~dGL~~yr~i~~~a~~~L~pgG~l~lEiG~~q~~~v~~~l~~---~~gf~~~~~~~~~~~~~ 309 (1082)
T PLN02672 233 EFLYSLSNYCALQGFVEDQFGLGLIARAVEEGISVIKPMGIMIFNMGGRPGQAVCERLFE---RRGFRITKLWQTKINQA 309 (1082)
T ss_pred ccccccCccccccCCCCCCcHHHHHHHHHHHHHHhccCCCEEEEEECccHHHHHHHHHHH---HCCCCeeEEeeehhhhc
Confidence 13678889999999999999999999998876 4544 7898887766432 1
Q ss_pred CCCCCceEEEEEEecCCCCCCCCCCCCCCcCCCC
Q 022962 256 QSPFGQRTAVVCLKSRRTPKKYPRDPGTPAKVPL 289 (289)
Q Consensus 256 ~~~~~~r~lv~~~k~~~~p~~~pr~~g~~~~~~~ 289 (289)
.+. .-+-+|.++ +++|..|-=-+|+...+|+
T Consensus 310 ~~~-~~~~~~~~~--~~~~~~~~~~~~~~~~~~~ 340 (1082)
T PLN02672 310 ADT-DISALVEIE--KNSRHRFEFFMGLVGDQPI 340 (1082)
T ss_pred ccc-chHHHHHHh--hcCccceeeeeccCCCCch
Confidence 111 112233333 3455666555666665553
No 24
>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]
Probab=99.76 E-value=4.3e-17 Score=141.44 Aligned_cols=153 Identities=19% Similarity=0.231 Sum_probs=124.2
Q ss_pred CCCCCHHHHHH-HHHHHHHHHHhhcCcCceeecChHHHHHhhhhhccccCCCCccccccccCCCCCCCCeEEEEcCCCCh
Q 022962 56 FETLNTRQQEQ-IHLYVDALLQWNRKMNLTAVKDVNEVMERHIDDSLAIIPPIKNSYTSHCDSSCNSNLKLVDVGTGAGL 134 (289)
Q Consensus 56 ~~~~~~~~~~~-l~~~~~~l~~~n~~~~l~~~~~~~~~~~~~~~~sl~~~~~~~~~~~~~~~~~~~~~~~VLDiGcG~G~ 134 (289)
+.++.+++.++ +..-.+.++....-+|..-..+.+.+|+..+.+.+... ++.++||++||||.
T Consensus 50 f~tV~e~eke~~V~~vF~~vA~~YD~mND~mSlGiHRlWKd~~v~~L~p~----------------~~m~~lDvaGGTGD 113 (296)
T KOG1540|consen 50 FKTVRESEKERLVHHVFESVAKKYDIMNDAMSLGIHRLWKDMFVSKLGPG----------------KGMKVLDVAGGTGD 113 (296)
T ss_pred ccccchhhhhhHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHhhhccCCC----------------CCCeEEEecCCcch
Confidence 35556666555 45556666655666777777888999988887777543 37899999999999
Q ss_pred HHHHHHHHCCC------CEEEEEeCChHHHHHHHHHHHHcCCC---CEEEEeccccccCCCCcCCCCceEEEEc----Cc
Q 022962 135 PGLVLAIACPD------WKVTLLESMNKRCVFLEHAVSLTQLL---NVQIVRGRAETLGKDVSFREQYDVAVAR----AV 201 (289)
Q Consensus 135 ~~l~la~~~p~------~~V~~iD~s~~~l~~a~~~~~~~~l~---ni~~~~~d~~~~~~~~~~~~~fD~V~sn----~~ 201 (289)
+++.+....+. .+|+.+|+|+.|++.+++.+.+.++. .+.++.+|+++++.+ +.+||..++. .+
T Consensus 114 iaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~l~~~~~~~w~~~dAE~LpFd---d~s~D~yTiafGIRN~ 190 (296)
T KOG1540|consen 114 IAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKKRPLKASSRVEWVEGDAEDLPFD---DDSFDAYTIAFGIRNV 190 (296)
T ss_pred hHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHHHhhcCCCcCCceEEEeCCcccCCCC---CCcceeEEEecceecC
Confidence 99999887665 89999999999999999999887763 389999999999976 3789999875 46
Q ss_pred ccHHHHHHHHccccccCeEEEEEEcC
Q 022962 202 AEMRILAEYCLPLVRVGGLFVAAKGH 227 (289)
Q Consensus 202 ~~~~~ll~~~~~~LkpgG~l~~~~g~ 227 (289)
.+++..+++++|+|||||+|.+..-.
T Consensus 191 th~~k~l~EAYRVLKpGGrf~cLeFs 216 (296)
T KOG1540|consen 191 THIQKALREAYRVLKPGGRFSCLEFS 216 (296)
T ss_pred CCHHHHHHHHHHhcCCCcEEEEEEcc
Confidence 68999999999999999999987643
No 25
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=99.75 E-value=4.4e-17 Score=138.79 Aligned_cols=126 Identities=19% Similarity=0.260 Sum_probs=102.3
Q ss_pred CCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCcCCCCceEEEEcC
Q 022962 121 SNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARA 200 (289)
Q Consensus 121 ~~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~~~~~fD~V~sn~ 200 (289)
++.+|||+|||+|.+++.+++.+|+.+|+++|+|+.+++.++++++.+++.+++++++|+... ..++||+|+++.
T Consensus 31 ~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~n~~~~~~~~i~~~~~d~~~~-----~~~~~D~v~~~~ 105 (187)
T PRK08287 31 RAKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRLIKENRQRFGCGNIDIIPGEAPIE-----LPGKADAIFIGG 105 (187)
T ss_pred CCCEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCCeEEEecCchhh-----cCcCCCEEEECC
Confidence 477999999999999999998888899999999999999999999998887899999987531 136799999886
Q ss_pred c-ccHHHHHHHHccccccCeEEEEEEcCCcHHHHHHHHHHHHHhCCeEeEEeee
Q 022962 201 V-AEMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLLQLCSV 253 (289)
Q Consensus 201 ~-~~~~~ll~~~~~~LkpgG~l~~~~g~~~~~ei~~~~~~l~~~g~~~~~~~~~ 253 (289)
. ..+..+++.+.+.|+|||++++..- ..+...++.+.+++.|+...++..+
T Consensus 106 ~~~~~~~~l~~~~~~Lk~gG~lv~~~~--~~~~~~~~~~~l~~~g~~~~~~~~~ 157 (187)
T PRK08287 106 SGGNLTAIIDWSLAHLHPGGRLVLTFI--LLENLHSALAHLEKCGVSELDCVQL 157 (187)
T ss_pred CccCHHHHHHHHHHhcCCCeEEEEEEe--cHhhHHHHHHHHHHCCCCcceEEEE
Confidence 3 4678899999999999999987542 1233344556777899876665433
No 26
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=99.75 E-value=2e-17 Score=136.17 Aligned_cols=105 Identities=20% Similarity=0.377 Sum_probs=91.4
Q ss_pred CCCeEEEEcCCCChHHHHHH-HHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCcCCCCceEEEEc
Q 022962 121 SNLKLVDVGTGAGLPGLVLA-IACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVAR 199 (289)
Q Consensus 121 ~~~~VLDiGcG~G~~~l~la-~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~~~~~fD~V~sn 199 (289)
++.+|||+|||+|.++..++ ...|+.+|+|+|+|+++++.|++.++.++++|++++++|+.+++.. +.++||+|+++
T Consensus 3 ~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~~~ni~~~~~d~~~l~~~--~~~~~D~I~~~ 80 (152)
T PF13847_consen 3 SNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELGLDNIEFIQGDIEDLPQE--LEEKFDIIISN 80 (152)
T ss_dssp TTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTTSTTEEEEESBTTCGCGC--SSTTEEEEEEE
T ss_pred CCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhcccccccccccceEEeehhccccc--cCCCeeEEEEc
Confidence 47899999999999999999 4578899999999999999999999999999999999999996532 22689999998
Q ss_pred C----cccHHHHHHHHccccccCeEEEEEEcC
Q 022962 200 A----VAEMRILAEYCLPLVRVGGLFVAAKGH 227 (289)
Q Consensus 200 ~----~~~~~~ll~~~~~~LkpgG~l~~~~g~ 227 (289)
. ..+...+++.+.++|++||.+++....
T Consensus 81 ~~l~~~~~~~~~l~~~~~~lk~~G~~i~~~~~ 112 (152)
T PF13847_consen 81 GVLHHFPDPEKVLKNIIRLLKPGGILIISDPN 112 (152)
T ss_dssp STGGGTSHHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred CchhhccCHHHHHHHHHHHcCCCcEEEEEECC
Confidence 5 456789999999999999999987643
No 27
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=99.75 E-value=6.9e-18 Score=146.07 Aligned_cols=98 Identities=23% Similarity=0.347 Sum_probs=88.9
Q ss_pred CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCcCCCCceEEEEcC-
Q 022962 122 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARA- 200 (289)
Q Consensus 122 ~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~~~~~fD~V~sn~- 200 (289)
+.+|||+|||.|.++..+|+. ++.|+|+|+++++++.|+..+.+.++ ++.+.+..++++... .++||+|+|..
T Consensus 60 g~~vLDvGCGgG~Lse~mAr~--Ga~VtgiD~se~~I~~Ak~ha~e~gv-~i~y~~~~~edl~~~---~~~FDvV~cmEV 133 (243)
T COG2227 60 GLRVLDVGCGGGILSEPLARL--GASVTGIDASEKPIEVAKLHALESGV-NIDYRQATVEDLASA---GGQFDVVTCMEV 133 (243)
T ss_pred CCeEEEecCCccHhhHHHHHC--CCeeEEecCChHHHHHHHHhhhhccc-cccchhhhHHHHHhc---CCCccEEEEhhH
Confidence 889999999999999999987 69999999999999999999999998 488999999998653 27999999995
Q ss_pred ---cccHHHHHHHHccccccCeEEEEEE
Q 022962 201 ---VAEMRILAEYCLPLVRVGGLFVAAK 225 (289)
Q Consensus 201 ---~~~~~~ll~~~~~~LkpgG~l~~~~ 225 (289)
+++++.+++.|.+++||||.+++..
T Consensus 134 lEHv~dp~~~~~~c~~lvkP~G~lf~ST 161 (243)
T COG2227 134 LEHVPDPESFLRACAKLVKPGGILFLST 161 (243)
T ss_pred HHccCCHHHHHHHHHHHcCCCcEEEEec
Confidence 6789999999999999999998753
No 28
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=99.74 E-value=1.7e-17 Score=139.37 Aligned_cols=102 Identities=22% Similarity=0.271 Sum_probs=88.3
Q ss_pred CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCcCCCCceEEEEcCc
Q 022962 122 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARAV 201 (289)
Q Consensus 122 ~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~~~~~fD~V~sn~~ 201 (289)
+.+|||+|||+|.+++.+++..|..+|+++|+|+.+++.+++|++.+++++++++++|+.+... +++||+|+||..
T Consensus 32 ~~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~~a~~~a~~n~~~n~~~~v~~~~~d~~~~~~----~~~fD~Iv~NPP 107 (170)
T PF05175_consen 32 GGRVLDLGCGSGVISLALAKRGPDAKVTAVDINPDALELAKRNAERNGLENVEVVQSDLFEALP----DGKFDLIVSNPP 107 (170)
T ss_dssp TCEEEEETSTTSHHHHHHHHTSTCEEEEEEESBHHHHHHHHHHHHHTTCTTEEEEESSTTTTCC----TTCEEEEEE---
T ss_pred CCeEEEecCChHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcCcccccccccccccccc----ccceeEEEEccc
Confidence 6799999999999999999998988999999999999999999999999889999999876432 378999999941
Q ss_pred ---------ccHHHHHHHHccccccCeEEEEEEcC
Q 022962 202 ---------AEMRILAEYCLPLVRVGGLFVAAKGH 227 (289)
Q Consensus 202 ---------~~~~~ll~~~~~~LkpgG~l~~~~g~ 227 (289)
...+.+++++.++|+|||.+++....
T Consensus 108 ~~~~~~~~~~~~~~~i~~a~~~Lk~~G~l~lv~~~ 142 (170)
T PF05175_consen 108 FHAGGDDGLDLLRDFIEQARRYLKPGGRLFLVINS 142 (170)
T ss_dssp SBTTSHCHHHHHHHHHHHHHHHEEEEEEEEEEEET
T ss_pred hhcccccchhhHHHHHHHHHHhccCCCEEEEEeec
Confidence 24689999999999999999876654
No 29
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=99.72 E-value=1e-16 Score=144.23 Aligned_cols=138 Identities=20% Similarity=0.197 Sum_probs=105.4
Q ss_pred CCCCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCC-EEEEeccccccCCCCcCCCCceEEE
Q 022962 119 CNSNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLN-VQIVRGRAETLGKDVSFREQYDVAV 197 (289)
Q Consensus 119 ~~~~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~n-i~~~~~d~~~~~~~~~~~~~fD~V~ 197 (289)
..++.+|||+|||||++++..++. ...+|+|+|+++-+++.+++|++.|+++. ++.-..+..+... .++||+|+
T Consensus 160 ~~~g~~vlDvGcGSGILaIAa~kL-GA~~v~g~DiDp~AV~aa~eNa~~N~v~~~~~~~~~~~~~~~~----~~~~DvIV 234 (300)
T COG2264 160 LKKGKTVLDVGCGSGILAIAAAKL-GAKKVVGVDIDPQAVEAARENARLNGVELLVQAKGFLLLEVPE----NGPFDVIV 234 (300)
T ss_pred hcCCCEEEEecCChhHHHHHHHHc-CCceEEEecCCHHHHHHHHHHHHHcCCchhhhcccccchhhcc----cCcccEEE
Confidence 346899999999999999998765 56789999999999999999999999864 3222233332221 25899999
Q ss_pred EcCccc-HHHHHHHHccccccCeEEEEEEcCCcHHHHHHHHHHHHHhCCeEeEEeeeecCCCCCceEEEEEEe
Q 022962 198 ARAVAE-MRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLLQLCSVESQSPFGQRTAVVCLK 269 (289)
Q Consensus 198 sn~~~~-~~~ll~~~~~~LkpgG~l~~~~g~~~~~ei~~~~~~l~~~g~~~~~~~~~~~~~~~~~r~lv~~~k 269 (289)
+|-.++ +..+...+.+.|||||++++ +|.- .+....+.+++...||.+.+.. ...++..+.++|
T Consensus 235 ANILA~vl~~La~~~~~~lkpgg~lIl-SGIl-~~q~~~V~~a~~~~gf~v~~~~------~~~eW~~i~~kr 299 (300)
T COG2264 235 ANILAEVLVELAPDIKRLLKPGGRLIL-SGIL-EDQAESVAEAYEQAGFEVVEVL------EREEWVAIVGKR 299 (300)
T ss_pred ehhhHHHHHHHHHHHHHHcCCCceEEE-Eeeh-HhHHHHHHHHHHhCCCeEeEEE------ecCCEEEEEEEc
Confidence 998875 57888999999999999976 6632 2223445566778999988775 236788887775
No 30
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=99.72 E-value=3.3e-16 Score=132.46 Aligned_cols=122 Identities=11% Similarity=0.086 Sum_probs=98.0
Q ss_pred CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCcCCCCceEEEEcCc
Q 022962 122 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARAV 201 (289)
Q Consensus 122 ~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~~~~~fD~V~sn~~ 201 (289)
+.+|||+|||+|.+++.++...+ +|+++|+|+.+++.++++++.++. +++++++|+.+.. .++||+|++|..
T Consensus 20 ~~~vLdlG~G~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~~~~~~-~~~~~~~d~~~~~-----~~~fD~Vi~n~p 91 (179)
T TIGR00537 20 PDDVLEIGAGTGLVAIRLKGKGK--CILTTDINPFAVKELRENAKLNNV-GLDVVMTDLFKGV-----RGKFDVILFNPP 91 (179)
T ss_pred CCeEEEeCCChhHHHHHHHhcCC--EEEEEECCHHHHHHHHHHHHHcCC-ceEEEEccccccc-----CCcccEEEECCC
Confidence 57899999999999999987643 999999999999999999998876 6899999987643 258999999831
Q ss_pred c-------------------------cHHHHHHHHccccccCeEEEEEEcCCc-HHHHHHHHHHHHHhCCeEeEEeeee
Q 022962 202 A-------------------------EMRILAEYCLPLVRVGGLFVAAKGHDP-QEEVKNSERAVQLMGASLLQLCSVE 254 (289)
Q Consensus 202 ~-------------------------~~~~ll~~~~~~LkpgG~l~~~~g~~~-~~ei~~~~~~l~~~g~~~~~~~~~~ 254 (289)
- .++.+++++.++|+|||.+++...... ..++ ...+++.||....+....
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~~~~~~~~~~---~~~l~~~gf~~~~~~~~~ 167 (179)
T TIGR00537 92 YLPLEDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQSSLNGEPDT---FDKLDERGFRYEIVAERG 167 (179)
T ss_pred CCCCcchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEEeccCChHHH---HHHHHhCCCeEEEEEEee
Confidence 0 146789999999999999998765433 4444 445668999888776553
No 31
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=99.71 E-value=1.2e-16 Score=144.77 Aligned_cols=134 Identities=22% Similarity=0.280 Sum_probs=98.6
Q ss_pred CCCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCC-EEEEeccccccCCCCcCCCCceEEEE
Q 022962 120 NSNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLN-VQIVRGRAETLGKDVSFREQYDVAVA 198 (289)
Q Consensus 120 ~~~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~n-i~~~~~d~~~~~~~~~~~~~fD~V~s 198 (289)
.++.+|||+|||||++++..++. ...+|+|+|+++.+++.|++|++.+++.. +.+ . ...+.. .++||+|++
T Consensus 160 ~~g~~vLDvG~GSGILaiaA~kl-GA~~v~a~DiDp~Av~~a~~N~~~N~~~~~~~v-~-~~~~~~-----~~~~dlvvA 231 (295)
T PF06325_consen 160 KPGKRVLDVGCGSGILAIAAAKL-GAKKVVAIDIDPLAVEAARENAELNGVEDRIEV-S-LSEDLV-----EGKFDLVVA 231 (295)
T ss_dssp STTSEEEEES-TTSHHHHHHHHT-TBSEEEEEESSCHHHHHHHHHHHHTT-TTCEEE-S-CTSCTC-----CS-EEEEEE
T ss_pred cCCCEEEEeCCcHHHHHHHHHHc-CCCeEEEecCCHHHHHHHHHHHHHcCCCeeEEE-E-Eecccc-----cccCCEEEE
Confidence 45789999999999999997764 66799999999999999999999999875 433 2 222221 378999999
Q ss_pred cCccc-HHHHHHHHccccccCeEEEEEEcCCcHHHHHHHHHHHHHhCCeEeEEeeeecCCCCCceEEEEEEec
Q 022962 199 RAVAE-MRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLLQLCSVESQSPFGQRTAVVCLKS 270 (289)
Q Consensus 199 n~~~~-~~~ll~~~~~~LkpgG~l~~~~g~~~~~ei~~~~~~l~~~g~~~~~~~~~~~~~~~~~r~lv~~~k~ 270 (289)
|-.++ +..++..+.++|+|||++++ +|.-. ++...+.++++. ||.+.+.. ..+.+..++++|+
T Consensus 232 NI~~~vL~~l~~~~~~~l~~~G~lIl-SGIl~-~~~~~v~~a~~~-g~~~~~~~------~~~~W~~l~~~Kk 295 (295)
T PF06325_consen 232 NILADVLLELAPDIASLLKPGGYLIL-SGILE-EQEDEVIEAYKQ-GFELVEER------EEGEWVALVFKKK 295 (295)
T ss_dssp ES-HHHHHHHHHHCHHHEEEEEEEEE-EEEEG-GGHHHHHHHHHT-TEEEEEEE------EETTEEEEEEEE-
T ss_pred CCCHHHHHHHHHHHHHhhCCCCEEEE-ccccH-HHHHHHHHHHHC-CCEEEEEE------EECCEEEEEEEeC
Confidence 97764 57888899999999999986 66322 223444556655 99887765 2477888888874
No 32
>PRK04266 fibrillarin; Provisional
Probab=99.70 E-value=8.8e-16 Score=134.61 Aligned_cols=145 Identities=19% Similarity=0.203 Sum_probs=103.2
Q ss_pred CCCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCcCCCCceEEEEc
Q 022962 120 NSNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVAR 199 (289)
Q Consensus 120 ~~~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~~~~~fD~V~sn 199 (289)
.++.+|||+|||+|.+++.++...+..+|+|+|+++.|++.+.++++.. .|+.++.+|+.+........++||+|++.
T Consensus 71 ~~g~~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~~ml~~l~~~a~~~--~nv~~i~~D~~~~~~~~~l~~~~D~i~~d 148 (226)
T PRK04266 71 KKGSKVLYLGAASGTTVSHVSDIVEEGVVYAVEFAPRPMRELLEVAEER--KNIIPILADARKPERYAHVVEKVDVIYQD 148 (226)
T ss_pred CCCCEEEEEccCCCHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhhc--CCcEEEECCCCCcchhhhccccCCEEEEC
Confidence 3588999999999999999998877679999999999999888877654 58999999987531111123579999986
Q ss_pred Ccc--cHHHHHHHHccccccCeEEEEE------EcC-CcHHHHHHHHHHHHHhCCeEeEEeeeecCCCC-CceEEEEEEe
Q 022962 200 AVA--EMRILAEYCLPLVRVGGLFVAA------KGH-DPQEEVKNSERAVQLMGASLLQLCSVESQSPF-GQRTAVVCLK 269 (289)
Q Consensus 200 ~~~--~~~~ll~~~~~~LkpgG~l~~~------~g~-~~~~ei~~~~~~l~~~g~~~~~~~~~~~~~~~-~~r~lv~~~k 269 (289)
... ....+++++.++|||||.+++. .-. ......+...+.++.+||++++...+ .+. .+...++.++
T Consensus 149 ~~~p~~~~~~L~~~~r~LKpGG~lvI~v~~~~~d~~~~~~~~~~~~~~~l~~aGF~~i~~~~l---~p~~~~h~~~v~~~ 225 (226)
T PRK04266 149 VAQPNQAEIAIDNAEFFLKDGGYLLLAIKARSIDVTKDPKEIFKEEIRKLEEGGFEILEVVDL---EPYHKDHAAVVARK 225 (226)
T ss_pred CCChhHHHHHHHHHHHhcCCCcEEEEEEecccccCcCCHHHHHHHHHHHHHHcCCeEEEEEcC---CCCcCCeEEEEEEc
Confidence 432 2245689999999999999983 211 11222233456788899998877644 233 3344555443
No 33
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=99.70 E-value=1.7e-16 Score=136.95 Aligned_cols=125 Identities=16% Similarity=0.056 Sum_probs=101.2
Q ss_pred CCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccc-cccCCCCcCCCCceEEEEc
Q 022962 121 SNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRA-ETLGKDVSFREQYDVAVAR 199 (289)
Q Consensus 121 ~~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~-~~~~~~~~~~~~fD~V~sn 199 (289)
++.+|||+|||+|..+..++...|..+|+|+|+|+++++.|+++++..+++|++++++|+ +.++.. ..+++||+|+++
T Consensus 40 ~~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i~~a~~~~~~~~~~~v~~~~~d~~~~l~~~-~~~~~~D~V~~~ 118 (202)
T PRK00121 40 DAPIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGKALKKIEEEGLTNLRLLCGDAVEVLLDM-FPDGSLDRIYLN 118 (202)
T ss_pred CCCeEEEEccCCCHHHHHHHHHCCCccEEEEEechHHHHHHHHHHHHcCCCCEEEEecCHHHHHHHH-cCccccceEEEE
Confidence 367999999999999999998888899999999999999999999998888899999999 665411 013689999987
Q ss_pred Ccc------------cHHHHHHHHccccccCeEEEEEEcCCcHHHHHHHHHHHHHhCCeEe
Q 022962 200 AVA------------EMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLL 248 (289)
Q Consensus 200 ~~~------------~~~~ll~~~~~~LkpgG~l~~~~g~~~~~ei~~~~~~l~~~g~~~~ 248 (289)
... ....+++++.++|||||.|++... ...-+..+.+.+++.|+...
T Consensus 119 ~~~p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~~~--~~~~~~~~~~~~~~~g~~~~ 177 (202)
T PRK00121 119 FPDPWPKKRHHKRRLVQPEFLALYARKLKPGGEIHFATD--WEGYAEYMLEVLSAEGGFLV 177 (202)
T ss_pred CCCCCCCccccccccCCHHHHHHHHHHcCCCCEEEEEcC--CHHHHHHHHHHHHhCccccc
Confidence 321 147899999999999999998653 34445566777888887543
No 34
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.70 E-value=6.7e-17 Score=156.45 Aligned_cols=184 Identities=12% Similarity=0.135 Sum_probs=125.2
Q ss_pred cCCCCCHHHHHHHHHHHHHHHHhhcCcCceeecChHHHHHhhhhhccccCCCCccccccccCCCCCCCCeEEEEcCCCCh
Q 022962 55 HFETLNTRQQEQIHLYVDALLQWNRKMNLTAVKDVNEVMERHIDDSLAIIPPIKNSYTSHCDSSCNSNLKLVDVGTGAGL 134 (289)
Q Consensus 55 ~~~~~~~~~~~~l~~~~~~l~~~n~~~~l~~~~~~~~~~~~~~~~sl~~~~~~~~~~~~~~~~~~~~~~~VLDiGcG~G~ 134 (289)
...+++.++...+..+.++++ .....+.+...||+..+.....+. +|+.+-....+.++.+|||||||+|.
T Consensus 209 ~~~~~~~~~~~~~~~~~~~~~-----y~~~~i~~~~~f~g~~~~v~~~v~----~te~l~~~~~~~~~~~vLDiGcG~G~ 279 (475)
T PLN02336 209 LWQKVSSTNDKGFQRFLDNVQ-----YKSSGILRYERVFGEGFVSTGGLE----TTKEFVDKLDLKPGQKVLDVGCGIGG 279 (475)
T ss_pred EEEeecCCcchhHHHHhhhhc-----cccccHHHHHHHhCCCCCCCchHH----HHHHHHHhcCCCCCCEEEEEeccCCH
Confidence 334566666666666666521 111227778888876554333322 11111000113457899999999999
Q ss_pred HHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCcCCCCceEEEEcC----cccHHHHHHH
Q 022962 135 PGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARA----VAEMRILAEY 210 (289)
Q Consensus 135 ~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~~~~~fD~V~sn~----~~~~~~ll~~ 210 (289)
+++.++... +++|+|+|+|+.+++.|++++...+ .+++++++|+.+.+.+ +++||+|+|+. +.+...++++
T Consensus 280 ~~~~la~~~-~~~v~gvDiS~~~l~~A~~~~~~~~-~~v~~~~~d~~~~~~~---~~~fD~I~s~~~l~h~~d~~~~l~~ 354 (475)
T PLN02336 280 GDFYMAENF-DVHVVGIDLSVNMISFALERAIGRK-CSVEFEVADCTKKTYP---DNSFDVIYSRDTILHIQDKPALFRS 354 (475)
T ss_pred HHHHHHHhc-CCEEEEEECCHHHHHHHHHHhhcCC-CceEEEEcCcccCCCC---CCCEEEEEECCcccccCCHHHHHHH
Confidence 999999765 6799999999999999998876443 3699999999876543 36899999974 4578899999
Q ss_pred HccccccCeEEEEEEcC----CcHH--------------HHHHHHHHHHHhCCeEeEEee
Q 022962 211 CLPLVRVGGLFVAAKGH----DPQE--------------EVKNSERAVQLMGASLLQLCS 252 (289)
Q Consensus 211 ~~~~LkpgG~l~~~~g~----~~~~--------------ei~~~~~~l~~~g~~~~~~~~ 252 (289)
+.++|||||.+++.... .... ...+..+.++++||..+++..
T Consensus 355 ~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~l~~aGF~~i~~~d 414 (475)
T PLN02336 355 FFKWLKPGGKVLISDYCRSPGTPSPEFAEYIKQRGYDLHDVQAYGQMLKDAGFDDVIAED 414 (475)
T ss_pred HHHHcCCCeEEEEEEeccCCCCCcHHHHHHHHhcCCCCCCHHHHHHHHHHCCCeeeeeec
Confidence 99999999999976311 1111 123456677889998776643
No 35
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=99.70 E-value=7.5e-16 Score=141.00 Aligned_cols=191 Identities=16% Similarity=0.131 Sum_probs=131.0
Q ss_pred cCCCCCHHHHHHHHHHHHHHHHhhcC-cCceeecChHHHHHhhhhhccc-cCCCCccccccccCCCCCCCCeEEEEcCCC
Q 022962 55 HFETLNTRQQEQIHLYVDALLQWNRK-MNLTAVKDVNEVMERHIDDSLA-IIPPIKNSYTSHCDSSCNSNLKLVDVGTGA 132 (289)
Q Consensus 55 ~~~~~~~~~~~~l~~~~~~l~~~n~~-~~l~~~~~~~~~~~~~~~~sl~-~~~~~~~~~~~~~~~~~~~~~~VLDiGcG~ 132 (289)
...++++.+.++++...+.+..|.+. +++..+....+.......+... .+.+ .++.+|||||||+
T Consensus 66 ~~~~~~~~~~~~l~~~l~~l~p~~~~~~~l~~~~~~~e~~s~~~~~~~l~~l~~-------------~~g~~VLDvGCG~ 132 (314)
T TIGR00452 66 KSNPLSAGQIKRILEEIMALMPWRKGPFELSGIKIDSEWRSDIKWDRVLPHLSP-------------LKGRTILDVGCGS 132 (314)
T ss_pred CCCCCCHHHHHHHHHHHHhcCCCCCCCcccccccCCHHHHHHHHHHHHHHhcCC-------------CCCCEEEEeccCC
Confidence 45678999999999999988877543 5665555433332221111111 0111 1378999999999
Q ss_pred ChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcC-CCCEEEEeccccccCCCCcCCCCceEEEEcC----cccHHHH
Q 022962 133 GLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQ-LLNVQIVRGRAETLGKDVSFREQYDVAVARA----VAEMRIL 207 (289)
Q Consensus 133 G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~-l~ni~~~~~d~~~~~~~~~~~~~fD~V~sn~----~~~~~~l 207 (289)
|..+..++... ...|+|||+|+.|+..++...+..+ ..++.+...++++++.. .+||+|+|+. ..++..+
T Consensus 133 G~~~~~~~~~g-~~~v~GiDpS~~ml~q~~~~~~~~~~~~~v~~~~~~ie~lp~~----~~FD~V~s~gvL~H~~dp~~~ 207 (314)
T TIGR00452 133 GYHMWRMLGHG-AKSLVGIDPTVLFLCQFEAVRKLLDNDKRAILEPLGIEQLHEL----YAFDTVFSMGVLYHRKSPLEH 207 (314)
T ss_pred cHHHHHHHHcC-CCEEEEEcCCHHHHHHHHHHHHHhccCCCeEEEECCHHHCCCC----CCcCEEEEcchhhccCCHHHH
Confidence 99988888653 3489999999999887655444333 23688888999888642 5799999996 3477899
Q ss_pred HHHHccccccCeEEEEEE----cCC-----cHH------------HHHHHHHHHHHhCCeEeEEeeeecCCCCCceE
Q 022962 208 AEYCLPLVRVGGLFVAAK----GHD-----PQE------------EVKNSERAVQLMGASLLQLCSVESQSPFGQRT 263 (289)
Q Consensus 208 l~~~~~~LkpgG~l~~~~----g~~-----~~~------------ei~~~~~~l~~~g~~~~~~~~~~~~~~~~~r~ 263 (289)
+++++++|+|||.|++.. +.. ... ....+...+++.||+.+++.......+..+|.
T Consensus 208 L~el~r~LkpGG~Lvletl~i~g~~~~~l~p~~ry~k~~nv~flpS~~~L~~~L~~aGF~~V~i~~~~~tt~~eqr~ 284 (314)
T TIGR00452 208 LKQLKHQLVIKGELVLETLVIDGDLNTVLVPKDRYAKMKNVYFIPSVSALKNWLEKVGFENFRILDVLKTTPEEQRK 284 (314)
T ss_pred HHHHHHhcCCCCEEEEEEEEecCccccccCchHHHHhccccccCCCHHHHHHHHHHCCCeEEEEEeccCCCHHHhhh
Confidence 999999999999999752 211 000 13445667889999999887665444444443
No 36
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=99.69 E-value=2.8e-16 Score=134.72 Aligned_cols=125 Identities=11% Similarity=0.056 Sum_probs=98.9
Q ss_pred CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCcCCCCceEEEEcCc
Q 022962 122 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARAV 201 (289)
Q Consensus 122 ~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~~~~~fD~V~sn~~ 201 (289)
..+|||||||+|.+++.+|..+|+..|+|+|+++++++.|++++...++.|++++++|+.++......++++|.|+++..
T Consensus 17 ~~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l~~a~~~~~~~~l~ni~~i~~d~~~~~~~~~~~~~~d~v~~~~p 96 (194)
T TIGR00091 17 APLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLAANNKANKLGLKNLHVLCGDANELLDKFFPDGSLSKVFLNFP 96 (194)
T ss_pred CceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHhCCCCEEEEccCHHHHHHhhCCCCceeEEEEECC
Confidence 56899999999999999999999999999999999999999999999998999999999875421111358999999842
Q ss_pred cc------------HHHHHHHHccccccCeEEEEEEcCCcHHHHHHHHHHHHHhC-CeEe
Q 022962 202 AE------------MRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMG-ASLL 248 (289)
Q Consensus 202 ~~------------~~~ll~~~~~~LkpgG~l~~~~g~~~~~ei~~~~~~l~~~g-~~~~ 248 (289)
.+ .+.+++.+.++|||||.|++.... ......+.+.+...+ |...
T Consensus 97 dpw~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~~td~--~~~~~~~~~~~~~~~~f~~~ 154 (194)
T TIGR00091 97 DPWPKKRHNKRRITQPHFLKEYANVLKKGGVIHFKTDN--EPLFEDMLKVLSENDLFENT 154 (194)
T ss_pred CcCCCCCccccccCCHHHHHHHHHHhCCCCEEEEEeCC--HHHHHHHHHHHHhCCCeEec
Confidence 21 257999999999999999987643 333444455566665 5543
No 37
>PRK07402 precorrin-6B methylase; Provisional
Probab=99.69 E-value=6.8e-16 Score=132.44 Aligned_cols=127 Identities=16% Similarity=0.233 Sum_probs=99.4
Q ss_pred CCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCcCCCCceEEEEcC
Q 022962 121 SNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARA 200 (289)
Q Consensus 121 ~~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~~~~~fD~V~sn~ 200 (289)
++.+|||+|||+|.+++.++...++.+|+++|+|+++++.+++|++.+++++++++++|+.+.... ....+|.++...
T Consensus 40 ~~~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~n~~~~~~~~v~~~~~d~~~~~~~--~~~~~d~v~~~~ 117 (196)
T PRK07402 40 PDSVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEEVVNLIRRNCDRFGVKNVEVIEGSAPECLAQ--LAPAPDRVCIEG 117 (196)
T ss_pred CCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCeEEEECchHHHHhh--CCCCCCEEEEEC
Confidence 478999999999999999998778899999999999999999999999988899999998652111 123467877766
Q ss_pred cccHHHHHHHHccccccCeEEEEEEcCCcHHHHHHHHHHHHH---hCCeEeEEe
Q 022962 201 VAEMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQL---MGASLLQLC 251 (289)
Q Consensus 201 ~~~~~~ll~~~~~~LkpgG~l~~~~g~~~~~ei~~~~~~l~~---~g~~~~~~~ 251 (289)
...+..+++.+.+.|+|||++++.... .+.+..+.+.++. .+++++++.
T Consensus 118 ~~~~~~~l~~~~~~LkpgG~li~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (196)
T PRK07402 118 GRPIKEILQAVWQYLKPGGRLVATASS--LEGLYAISEGLAQLQARNIEVVQAA 169 (196)
T ss_pred CcCHHHHHHHHHHhcCCCeEEEEEeec--HHHHHHHHHHHHhcCCCCceEEEEE
Confidence 567789999999999999999987643 3333444444544 466666654
No 38
>PLN02244 tocopherol O-methyltransferase
Probab=99.69 E-value=5.3e-16 Score=144.11 Aligned_cols=129 Identities=14% Similarity=0.115 Sum_probs=104.0
Q ss_pred CCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCC-CEEEEeccccccCCCCcCCCCceEEEEc
Q 022962 121 SNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLL-NVQIVRGRAETLGKDVSFREQYDVAVAR 199 (289)
Q Consensus 121 ~~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~-ni~~~~~d~~~~~~~~~~~~~fD~V~sn 199 (289)
++.+|||||||+|.++..++..+ +++|+|||+|+.+++.++++++..++. +++++++|+.+++.. +++||+|+++
T Consensus 118 ~~~~VLDiGCG~G~~~~~La~~~-g~~v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~~~D~~~~~~~---~~~FD~V~s~ 193 (340)
T PLN02244 118 RPKRIVDVGCGIGGSSRYLARKY-GANVKGITLSPVQAARANALAAAQGLSDKVSFQVADALNQPFE---DGQFDLVWSM 193 (340)
T ss_pred CCCeEEEecCCCCHHHHHHHHhc-CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcCcccCCCC---CCCccEEEEC
Confidence 47899999999999999999876 679999999999999999999888874 699999999887653 3789999997
Q ss_pred C----cccHHHHHHHHccccccCeEEEEEEcC------C----cHH------------------HHHHHHHHHHHhCCeE
Q 022962 200 A----VAEMRILAEYCLPLVRVGGLFVAAKGH------D----PQE------------------EVKNSERAVQLMGASL 247 (289)
Q Consensus 200 ~----~~~~~~ll~~~~~~LkpgG~l~~~~g~------~----~~~------------------ei~~~~~~l~~~g~~~ 247 (289)
. +.+...+++++.++|||||++++..-. . ... ...++.+.++++||..
T Consensus 194 ~~~~h~~d~~~~l~e~~rvLkpGG~lvi~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~p~~~s~~~~~~~l~~aGf~~ 273 (340)
T PLN02244 194 ESGEHMPDKRKFVQELARVAAPGGRIIIVTWCHRDLEPGETSLKPDEQKLLDKICAAYYLPAWCSTSDYVKLAESLGLQD 273 (340)
T ss_pred CchhccCCHHHHHHHHHHHcCCCcEEEEEEecccccccccccCCHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHCCCCe
Confidence 4 457789999999999999999975310 0 000 1234556788899988
Q ss_pred eEEeee
Q 022962 248 LQLCSV 253 (289)
Q Consensus 248 ~~~~~~ 253 (289)
++...+
T Consensus 274 v~~~d~ 279 (340)
T PLN02244 274 IKTEDW 279 (340)
T ss_pred eEeeeC
Confidence 877654
No 39
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=99.69 E-value=4.2e-16 Score=122.77 Aligned_cols=101 Identities=22% Similarity=0.197 Sum_probs=87.7
Q ss_pred CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCcCCCCceEEEEcC-
Q 022962 122 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARA- 200 (289)
Q Consensus 122 ~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~~~~~fD~V~sn~- 200 (289)
+.+|||+|||+|.++..++...|..+|+++|+|+.+++.++++++.+++.+++++.+|+...... ..++||.|++..
T Consensus 20 ~~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~D~v~~~~~ 97 (124)
T TIGR02469 20 GDVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEALRLIERNARRFGVSNIVIVEGDAPEALED--SLPEPDRVFIGGS 97 (124)
T ss_pred CCEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHHHHhCCCceEEEeccccccChh--hcCCCCEEEECCc
Confidence 67999999999999999999888899999999999999999999998888899999988753221 236899999875
Q ss_pred cccHHHHHHHHccccccCeEEEEE
Q 022962 201 VAEMRILAEYCLPLVRVGGLFVAA 224 (289)
Q Consensus 201 ~~~~~~ll~~~~~~LkpgG~l~~~ 224 (289)
......+++.+.++|+|||++++.
T Consensus 98 ~~~~~~~l~~~~~~Lk~gG~li~~ 121 (124)
T TIGR02469 98 GGLLQEILEAIWRRLRPGGRIVLN 121 (124)
T ss_pred chhHHHHHHHHHHHcCCCCEEEEE
Confidence 456789999999999999999874
No 40
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=99.68 E-value=1.8e-15 Score=130.10 Aligned_cols=123 Identities=17% Similarity=0.243 Sum_probs=100.6
Q ss_pred CCCeEEEEcCCCChHHHHHHHHC-CCCEEEEEeCChHHHHHHHHHHHHcCC-CCEEEEeccccccCCCCcCCCCceEEEE
Q 022962 121 SNLKLVDVGTGAGLPGLVLAIAC-PDWKVTLLESMNKRCVFLEHAVSLTQL-LNVQIVRGRAETLGKDVSFREQYDVAVA 198 (289)
Q Consensus 121 ~~~~VLDiGcG~G~~~l~la~~~-p~~~V~~iD~s~~~l~~a~~~~~~~~l-~ni~~~~~d~~~~~~~~~~~~~fD~V~s 198 (289)
++.+|||+|||+|.+++.+|... +..+|+++|+++++++.++++++.+++ ++++++.+|+.+.... ..++||+|++
T Consensus 40 ~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~~~~v~~~~~d~~~~l~~--~~~~~D~V~~ 117 (198)
T PRK00377 40 KGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGVLNNIVLIKGEAPEILFT--INEKFDRIFI 117 (198)
T ss_pred CcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCCCCCeEEEEechhhhHhh--cCCCCCEEEE
Confidence 47899999999999999998764 567999999999999999999999984 6899999998764221 2367999999
Q ss_pred cC-cccHHHHHHHHccccccCeEEEEEEcCCcHHHHHHHHHHHHHhCCeE
Q 022962 199 RA-VAEMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASL 247 (289)
Q Consensus 199 n~-~~~~~~ll~~~~~~LkpgG~l~~~~g~~~~~ei~~~~~~l~~~g~~~ 247 (289)
+. ...+..+++.+.++|+|||++++.. ...+.+.++...+++.||..
T Consensus 118 ~~~~~~~~~~l~~~~~~LkpgG~lv~~~--~~~~~~~~~~~~l~~~g~~~ 165 (198)
T PRK00377 118 GGGSEKLKEIISASWEIIKKGGRIVIDA--ILLETVNNALSALENIGFNL 165 (198)
T ss_pred CCCcccHHHHHHHHHHHcCCCcEEEEEe--ecHHHHHHHHHHHHHcCCCe
Confidence 64 4578899999999999999998643 23455667777888899854
No 41
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=99.67 E-value=9.3e-16 Score=131.84 Aligned_cols=97 Identities=22% Similarity=0.217 Sum_probs=84.1
Q ss_pred CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCcCCCCceEEEEcCc
Q 022962 122 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARAV 201 (289)
Q Consensus 122 ~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~~~~~fD~V~sn~~ 201 (289)
+.+|||+|||+|..++.+|.. +.+|+|+|+|+.+++.++++++..++.++++...|+.++.. +++||+|+++.+
T Consensus 31 ~~~vLDiGcG~G~~a~~La~~--g~~V~gvD~S~~~i~~a~~~~~~~~~~~v~~~~~d~~~~~~----~~~fD~I~~~~~ 104 (197)
T PRK11207 31 PGKTLDLGCGNGRNSLYLAAN--GFDVTAWDKNPMSIANLERIKAAENLDNLHTAVVDLNNLTF----DGEYDFILSTVV 104 (197)
T ss_pred CCcEEEECCCCCHHHHHHHHC--CCEEEEEeCCHHHHHHHHHHHHHcCCCcceEEecChhhCCc----CCCcCEEEEecc
Confidence 679999999999999999975 67999999999999999999999888889999999987643 367999999843
Q ss_pred ------ccHHHHHHHHccccccCeEEEEE
Q 022962 202 ------AEMRILAEYCLPLVRVGGLFVAA 224 (289)
Q Consensus 202 ------~~~~~ll~~~~~~LkpgG~l~~~ 224 (289)
.+...+++.+.++|+|||.+++.
T Consensus 105 ~~~~~~~~~~~~l~~i~~~LkpgG~~~~~ 133 (197)
T PRK11207 105 LMFLEAKTIPGLIANMQRCTKPGGYNLIV 133 (197)
T ss_pred hhhCCHHHHHHHHHHHHHHcCCCcEEEEE
Confidence 24689999999999999996553
No 42
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=99.67 E-value=1.7e-15 Score=136.40 Aligned_cols=130 Identities=16% Similarity=0.212 Sum_probs=103.2
Q ss_pred CCCCCeEEEEcCCCChHHHHHHHHC-CCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCcCCCCceEEE
Q 022962 119 CNSNLKLVDVGTGAGLPGLVLAIAC-PDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAV 197 (289)
Q Consensus 119 ~~~~~~VLDiGcG~G~~~l~la~~~-p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~~~~~fD~V~ 197 (289)
+.++.+|||+|||+|..++.++... +..+|+|+|+++.+++.|+++.+..+.++++++.+|+++++.. +++||+|+
T Consensus 75 ~~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~~~v~~~~~d~~~l~~~---~~~fD~Vi 151 (272)
T PRK11873 75 LKPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGYTNVEFRLGEIEALPVA---DNSVDVII 151 (272)
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcCCCCEEEEEcchhhCCCC---CCceeEEE
Confidence 4468899999999999888777664 5578999999999999999999998888999999999987643 36899999
Q ss_pred EcCc----ccHHHHHHHHccccccCeEEEEEEc---CC-cH----------------HHHHHHHHHHHHhCCeEeEEe
Q 022962 198 ARAV----AEMRILAEYCLPLVRVGGLFVAAKG---HD-PQ----------------EEVKNSERAVQLMGASLLQLC 251 (289)
Q Consensus 198 sn~~----~~~~~ll~~~~~~LkpgG~l~~~~g---~~-~~----------------~ei~~~~~~l~~~g~~~~~~~ 251 (289)
++.+ .+...+++++.++|||||++++... .. .. ....++.+.++..||..+++.
T Consensus 152 ~~~v~~~~~d~~~~l~~~~r~LkpGG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~aGf~~v~i~ 229 (272)
T PRK11873 152 SNCVINLSPDKERVFKEAFRVLKPGGRFAISDVVLRGELPEEIRNDAELYAGCVAGALQEEEYLAMLAEAGFVDITIQ 229 (272)
T ss_pred EcCcccCCCCHHHHHHHHHHHcCCCcEEEEEEeeccCCCCHHHHHhHHHHhccccCCCCHHHHHHHHHHCCCCceEEE
Confidence 9853 4678899999999999999997421 00 00 012345667778899887664
No 43
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=99.67 E-value=3.2e-15 Score=137.81 Aligned_cols=179 Identities=17% Similarity=0.166 Sum_probs=126.5
Q ss_pred cCCCCCHHHHHHHHHHHHHHHHhhcC-cCceee---cChHHHHHhhhh-hccccCCCCccccccccCCCCCCCCeEEEEc
Q 022962 55 HFETLNTRQQEQIHLYVDALLQWNRK-MNLTAV---KDVNEVMERHID-DSLAIIPPIKNSYTSHCDSSCNSNLKLVDVG 129 (289)
Q Consensus 55 ~~~~~~~~~~~~l~~~~~~l~~~n~~-~~l~~~---~~~~~~~~~~~~-~sl~~~~~~~~~~~~~~~~~~~~~~~VLDiG 129 (289)
...++++++.+.+......+..|.+. ..+..+ +.+..++.-..+ ..+. + + ++.+|||||
T Consensus 67 ~~~~~~~~~~~~l~~~l~~~~pwrkg~~~~~~~~~~~ew~s~~k~~~l~~~l~---~------------l-~g~~VLDIG 130 (322)
T PRK15068 67 SEEPLSEGQRKRIENLLRALMPWRKGPFSLFGIHIDTEWRSDWKWDRVLPHLS---P------------L-KGRTVLDVG 130 (322)
T ss_pred cCCCCCHHHHHHHHHHHHhhcCcccCCccccCeeecceehHHhHHHHHHHhhC---C------------C-CCCEEEEec
Confidence 45678899999999888888887554 233222 233444432222 1111 1 1 378999999
Q ss_pred CCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCC-CCEEEEeccccccCCCCcCCCCceEEEEcC----cccH
Q 022962 130 TGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQL-LNVQIVRGRAETLGKDVSFREQYDVAVARA----VAEM 204 (289)
Q Consensus 130 cG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l-~ni~~~~~d~~~~~~~~~~~~~fD~V~sn~----~~~~ 204 (289)
||+|..+..++...+ ..|+|+|+|+.++..++...+..+. .+++++.+|+++++. +++||+|+|+. ..++
T Consensus 131 CG~G~~~~~la~~g~-~~V~GiD~S~~~l~q~~a~~~~~~~~~~i~~~~~d~e~lp~----~~~FD~V~s~~vl~H~~dp 205 (322)
T PRK15068 131 CGNGYHMWRMLGAGA-KLVVGIDPSQLFLCQFEAVRKLLGNDQRAHLLPLGIEQLPA----LKAFDTVFSMGVLYHRRSP 205 (322)
T ss_pred cCCcHHHHHHHHcCC-CEEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEeCCHHHCCC----cCCcCEEEECChhhccCCH
Confidence 999999999987743 4799999999998766554444432 379999999998864 37899999985 3578
Q ss_pred HHHHHHHccccccCeEEEEEE----cCC-----cH------------HHHHHHHHHHHHhCCeEeEEeeee
Q 022962 205 RILAEYCLPLVRVGGLFVAAK----GHD-----PQ------------EEVKNSERAVQLMGASLLQLCSVE 254 (289)
Q Consensus 205 ~~ll~~~~~~LkpgG~l~~~~----g~~-----~~------------~ei~~~~~~l~~~g~~~~~~~~~~ 254 (289)
..+++++++.|+|||.+++.. +.. .. ....++...++++||..+++....
T Consensus 206 ~~~L~~l~~~LkpGG~lvl~~~~i~~~~~~~l~p~~~y~~~~~~~~lps~~~l~~~L~~aGF~~i~~~~~~ 276 (322)
T PRK15068 206 LDHLKQLKDQLVPGGELVLETLVIDGDENTVLVPGDRYAKMRNVYFIPSVPALKNWLERAGFKDVRIVDVS 276 (322)
T ss_pred HHHHHHHHHhcCCCcEEEEEEEEecCCCccccCchhHHhcCccceeCCCHHHHHHHHHHcCCceEEEEeCC
Confidence 899999999999999998752 111 01 123456778889999988887553
No 44
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=99.67 E-value=1.6e-15 Score=135.03 Aligned_cols=130 Identities=24% Similarity=0.251 Sum_probs=98.9
Q ss_pred CCCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCC-CEEEEeccccccCCCCcCCCCceEEEE
Q 022962 120 NSNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLL-NVQIVRGRAETLGKDVSFREQYDVAVA 198 (289)
Q Consensus 120 ~~~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~-ni~~~~~d~~~~~~~~~~~~~fD~V~s 198 (289)
.++.+|||+|||+|.+++.+++. ...+|+|+|+|+.+++.|++|++.+++. ++.+..++ .+||+|++
T Consensus 118 ~~~~~VLDiGcGsG~l~i~~~~~-g~~~v~giDis~~~l~~A~~n~~~~~~~~~~~~~~~~-----------~~fD~Vva 185 (250)
T PRK00517 118 LPGKTVLDVGCGSGILAIAAAKL-GAKKVLAVDIDPQAVEAARENAELNGVELNVYLPQGD-----------LKADVIVA 185 (250)
T ss_pred CCCCEEEEeCCcHHHHHHHHHHc-CCCeEEEEECCHHHHHHHHHHHHHcCCCceEEEccCC-----------CCcCEEEE
Confidence 45889999999999999887654 4457999999999999999999988873 34432221 26999999
Q ss_pred cCcc-cHHHHHHHHccccccCeEEEEEEcCCcHHHHHHHHHHHHHhCCeEeEEeeeecCCCCCceEEEEEEe
Q 022962 199 RAVA-EMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLLQLCSVESQSPFGQRTAVVCLK 269 (289)
Q Consensus 199 n~~~-~~~~ll~~~~~~LkpgG~l~~~~g~~~~~ei~~~~~~l~~~g~~~~~~~~~~~~~~~~~r~lv~~~k 269 (289)
|... .+..+++++.++|||||++++. |. ..++...+.+.++..||.+.+.. ..+++..++++|
T Consensus 186 ni~~~~~~~l~~~~~~~LkpgG~lils-gi-~~~~~~~v~~~l~~~Gf~~~~~~------~~~~W~~~~~~~ 249 (250)
T PRK00517 186 NILANPLLELAPDLARLLKPGGRLILS-GI-LEEQADEVLEAYEEAGFTLDEVL------ERGEWVALVGKK 249 (250)
T ss_pred cCcHHHHHHHHHHHHHhcCCCcEEEEE-EC-cHhhHHHHHHHHHHCCCEEEEEE------EeCCEEEEEEEe
Confidence 9755 4678899999999999999874 32 23344556677889999887764 236677777765
No 45
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.67 E-value=1.8e-15 Score=135.02 Aligned_cols=99 Identities=20% Similarity=0.290 Sum_probs=86.1
Q ss_pred CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCC-CCEEEEeccccccCCCCcCCCCceEEEEcC
Q 022962 122 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQL-LNVQIVRGRAETLGKDVSFREQYDVAVARA 200 (289)
Q Consensus 122 ~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l-~ni~~~~~d~~~~~~~~~~~~~fD~V~sn~ 200 (289)
+.+|||+|||+|..+..++.. +.+|+|+|+|++|++.|+++++..++ .+++++++|+.++... .+++||+|+++.
T Consensus 45 ~~~vLDiGcG~G~~a~~la~~--g~~v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~d~~~l~~~--~~~~fD~V~~~~ 120 (255)
T PRK11036 45 PLRVLDAGGGEGQTAIKLAEL--GHQVILCDLSAEMIQRAKQAAEAKGVSDNMQFIHCAAQDIAQH--LETPVDLILFHA 120 (255)
T ss_pred CCEEEEeCCCchHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHhcCCccceEEEEcCHHHHhhh--cCCCCCEEEehh
Confidence 679999999999999999875 57999999999999999999998886 4799999999887421 247899999985
Q ss_pred ----cccHHHHHHHHccccccCeEEEEE
Q 022962 201 ----VAEMRILAEYCLPLVRVGGLFVAA 224 (289)
Q Consensus 201 ----~~~~~~ll~~~~~~LkpgG~l~~~ 224 (289)
+.++..+++++.++|||||.+++.
T Consensus 121 vl~~~~~~~~~l~~~~~~LkpgG~l~i~ 148 (255)
T PRK11036 121 VLEWVADPKSVLQTLWSVLRPGGALSLM 148 (255)
T ss_pred HHHhhCCHHHHHHHHHHHcCCCeEEEEE
Confidence 357789999999999999999865
No 46
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=99.66 E-value=3.3e-16 Score=117.20 Aligned_cols=91 Identities=20% Similarity=0.239 Sum_probs=76.3
Q ss_pred EEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCcCCCCceEEEEcC----c
Q 022962 126 VDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARA----V 201 (289)
Q Consensus 126 LDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~~~~~fD~V~sn~----~ 201 (289)
||+|||+|..+..++.. +..+|+++|+|+++++.+++..... ++.+.++|+++++.+ +++||+|+++. .
T Consensus 1 LdiG~G~G~~~~~l~~~-~~~~v~~~D~~~~~~~~~~~~~~~~---~~~~~~~d~~~l~~~---~~sfD~v~~~~~~~~~ 73 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKR-GGASVTGIDISEEMLEQARKRLKNE---GVSFRQGDAEDLPFP---DNSFDVVFSNSVLHHL 73 (95)
T ss_dssp EEET-TTSHHHHHHHHT-TTCEEEEEES-HHHHHHHHHHTTTS---TEEEEESBTTSSSS----TT-EEEEEEESHGGGS
T ss_pred CEecCcCCHHHHHHHhc-cCCEEEEEeCCHHHHHHHHhccccc---CchheeehHHhCccc---cccccccccccceeec
Confidence 89999999999999977 7899999999999999998866543 466999999999764 48999999984 4
Q ss_pred ccHHHHHHHHccccccCeEEEE
Q 022962 202 AEMRILAEYCLPLVRVGGLFVA 223 (289)
Q Consensus 202 ~~~~~ll~~~~~~LkpgG~l~~ 223 (289)
.+...+++++.++|||||++++
T Consensus 74 ~~~~~~l~e~~rvLk~gG~l~~ 95 (95)
T PF08241_consen 74 EDPEAALREIYRVLKPGGRLVI 95 (95)
T ss_dssp SHHHHHHHHHHHHEEEEEEEEE
T ss_pred cCHHHHHHHHHHHcCcCeEEeC
Confidence 5789999999999999999985
No 47
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=99.66 E-value=2.1e-15 Score=131.69 Aligned_cols=126 Identities=13% Similarity=0.082 Sum_probs=102.2
Q ss_pred eEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCC-CEEEEeccccccCCCCcCCCCceEEEEcC--
Q 022962 124 KLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLL-NVQIVRGRAETLGKDVSFREQYDVAVARA-- 200 (289)
Q Consensus 124 ~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~-ni~~~~~d~~~~~~~~~~~~~fD~V~sn~-- 200 (289)
+|||||||+|.++..++..+++.+|+|+|+|+.+++.++++++..++. +++++..|+.+.+. .++||+|++..
T Consensus 2 ~vLDiGcG~G~~~~~la~~~~~~~v~gid~s~~~~~~a~~~~~~~gl~~~i~~~~~d~~~~~~----~~~fD~I~~~~~l 77 (224)
T smart00828 2 RVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQAEVGRERIRALGLQGRIRIFYRDSAKDPF----PDTYDLVFGFEVI 77 (224)
T ss_pred eEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEecccccCCC----CCCCCEeehHHHH
Confidence 799999999999999998888899999999999999999999888875 59999999865532 36899999873
Q ss_pred --cccHHHHHHHHccccccCeEEEEEEcCC------c-------HHHHHHHHHHHHHhCCeEeEEeee
Q 022962 201 --VAEMRILAEYCLPLVRVGGLFVAAKGHD------P-------QEEVKNSERAVQLMGASLLQLCSV 253 (289)
Q Consensus 201 --~~~~~~ll~~~~~~LkpgG~l~~~~g~~------~-------~~ei~~~~~~l~~~g~~~~~~~~~ 253 (289)
+.+...+++.+.++|+|||++++..-.. . .....++.+.+...||.+.+...+
T Consensus 78 ~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~~~Gf~~~~~~~~ 145 (224)
T smart00828 78 HHIKDKMDLFSNISRHLKDGGHLVLADFIANLLSAIEHEETTSYLVTREEWAELLARNNLRVVEGVDA 145 (224)
T ss_pred HhCCCHHHHHHHHHHHcCCCCEEEEEEcccccCccccccccccccCCHHHHHHHHHHCCCeEEEeEEC
Confidence 5678899999999999999999753110 0 111344566778999999887654
No 48
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=99.65 E-value=1e-14 Score=134.64 Aligned_cols=126 Identities=21% Similarity=0.221 Sum_probs=100.3
Q ss_pred CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCcCCCCceEEEEcC-
Q 022962 122 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARA- 200 (289)
Q Consensus 122 ~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~~~~~fD~V~sn~- 200 (289)
+.+|||||||+|.+++.++...++.+|+++|+|+.|++.|+++.. ..+++++++|+++++.. +++||+|+++.
T Consensus 114 ~~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~~mL~~A~~k~~---~~~i~~i~gD~e~lp~~---~~sFDvVIs~~~ 187 (340)
T PLN02490 114 NLKVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP---LKECKIIEGDAEDLPFP---TDYADRYVSAGS 187 (340)
T ss_pred CCEEEEEecCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhhh---ccCCeEEeccHHhCCCC---CCceeEEEEcCh
Confidence 679999999999999999888777899999999999999998754 34688999999987643 36899999974
Q ss_pred ---cccHHHHHHHHccccccCeEEEEEEcCCc--------------HHHHHHHHHHHHHhCCeEeEEeee
Q 022962 201 ---VAEMRILAEYCLPLVRVGGLFVAAKGHDP--------------QEEVKNSERAVQLMGASLLQLCSV 253 (289)
Q Consensus 201 ---~~~~~~ll~~~~~~LkpgG~l~~~~g~~~--------------~~ei~~~~~~l~~~g~~~~~~~~~ 253 (289)
..+...+++++.++|+|||++++...... ....+++.+.+++.||+.+++..+
T Consensus 188 L~~~~d~~~~L~e~~rvLkPGG~LvIi~~~~p~~~~~r~~~~~~~~~~t~eEl~~lL~~aGF~~V~i~~i 257 (340)
T PLN02490 188 IEYWPDPQRGIKEAYRVLKIGGKACLIGPVHPTFWLSRFFADVWMLFPKEEEYIEWFTKAGFKDVKLKRI 257 (340)
T ss_pred hhhCCCHHHHHHHHHHhcCCCcEEEEEEecCcchhHHHHhhhhhccCCCHHHHHHHHHHCCCeEEEEEEc
Confidence 44678899999999999999987532110 001244566778999998888754
No 49
>PRK14968 putative methyltransferase; Provisional
Probab=99.64 E-value=9.9e-15 Score=123.50 Aligned_cols=123 Identities=15% Similarity=0.196 Sum_probs=97.7
Q ss_pred CCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCC--EEEEeccccccCCCCcCCCCceEEEE
Q 022962 121 SNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLN--VQIVRGRAETLGKDVSFREQYDVAVA 198 (289)
Q Consensus 121 ~~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~n--i~~~~~d~~~~~~~~~~~~~fD~V~s 198 (289)
++.+|||+|||+|.+++.++.. +.+|+|+|+|+++++.++++++.++..+ +.++++|+.+... +++||+|++
T Consensus 23 ~~~~vLd~G~G~G~~~~~l~~~--~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~----~~~~d~vi~ 96 (188)
T PRK14968 23 KGDRVLEVGTGSGIVAIVAAKN--GKKVVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSDLFEPFR----GDKFDVILF 96 (188)
T ss_pred CCCEEEEEccccCHHHHHHHhh--cceEEEEECCHHHHHHHHHHHHHcCCCCcceEEEecccccccc----ccCceEEEE
Confidence 4779999999999999999876 6899999999999999999999888765 8899988766322 247999999
Q ss_pred cCc-------------------------ccHHHHHHHHccccccCeEEEEEEcCC-cHHHHHHHHHHHHHhCCeEeEEee
Q 022962 199 RAV-------------------------AEMRILAEYCLPLVRVGGLFVAAKGHD-PQEEVKNSERAVQLMGASLLQLCS 252 (289)
Q Consensus 199 n~~-------------------------~~~~~ll~~~~~~LkpgG~l~~~~g~~-~~~ei~~~~~~l~~~g~~~~~~~~ 252 (289)
|.. ..+..+++++.++|+|||.+++..+.. ..++ +.+.+.++||++..+..
T Consensus 97 n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~~~~~~~~~~~---l~~~~~~~g~~~~~~~~ 173 (188)
T PRK14968 97 NPPYLPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILLLQSSLTGEDE---VLEYLEKLGFEAEVVAE 173 (188)
T ss_pred CCCcCCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEEEEcccCCHHH---HHHHHHHCCCeeeeeee
Confidence 831 124678999999999999998876543 2333 44567789998776653
No 50
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=99.63 E-value=2e-15 Score=134.18 Aligned_cols=100 Identities=14% Similarity=0.196 Sum_probs=85.3
Q ss_pred CCCeEEEEcCCCChHHHHHHHH--CCCCEEEEEeCChHHHHHHHHHHHHcCCC-CEEEEeccccccCCCCcCCCCceEEE
Q 022962 121 SNLKLVDVGTGAGLPGLVLAIA--CPDWKVTLLESMNKRCVFLEHAVSLTQLL-NVQIVRGRAETLGKDVSFREQYDVAV 197 (289)
Q Consensus 121 ~~~~VLDiGcG~G~~~l~la~~--~p~~~V~~iD~s~~~l~~a~~~~~~~~l~-ni~~~~~d~~~~~~~~~~~~~fD~V~ 197 (289)
++.+|||||||+|..++.++.. .|+++|+|+|+|+.|++.|++++...+.. +++++++|+.+++. ..+|+|+
T Consensus 56 ~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~~~~~v~~~~~d~~~~~~-----~~~D~vv 130 (247)
T PRK15451 56 PGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAI-----ENASMVV 130 (247)
T ss_pred CCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEeCChhhCCC-----CCCCEEe
Confidence 3679999999999999888874 57899999999999999999999887764 69999999988754 3589999
Q ss_pred EcCc------ccHHHHHHHHccccccCeEEEEEE
Q 022962 198 ARAV------AEMRILAEYCLPLVRVGGLFVAAK 225 (289)
Q Consensus 198 sn~~------~~~~~ll~~~~~~LkpgG~l~~~~ 225 (289)
++.. .....+++++++.|||||.|++..
T Consensus 131 ~~~~l~~l~~~~~~~~l~~i~~~LkpGG~l~l~e 164 (247)
T PRK15451 131 LNFTLQFLEPSERQALLDKIYQGLNPGGALVLSE 164 (247)
T ss_pred hhhHHHhCCHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence 8731 235789999999999999998854
No 51
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=99.63 E-value=4.5e-15 Score=133.14 Aligned_cols=129 Identities=15% Similarity=0.154 Sum_probs=99.1
Q ss_pred CCCCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCcCCCCceEEEE
Q 022962 119 CNSNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVA 198 (289)
Q Consensus 119 ~~~~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~~~~~fD~V~s 198 (289)
+.++.+|||||||+|.++..++..+ +++|+|+|+|+.+++.|+++... ..+++++++|+.+.+.+ +++||+|++
T Consensus 50 l~~~~~VLDiGcG~G~~a~~la~~~-~~~v~giD~s~~~~~~a~~~~~~--~~~i~~~~~D~~~~~~~---~~~FD~V~s 123 (263)
T PTZ00098 50 LNENSKVLDIGSGLGGGCKYINEKY-GAHVHGVDICEKMVNIAKLRNSD--KNKIEFEANDILKKDFP---ENTFDMIYS 123 (263)
T ss_pred CCCCCEEEEEcCCCChhhHHHHhhc-CCEEEEEECCHHHHHHHHHHcCc--CCceEEEECCcccCCCC---CCCeEEEEE
Confidence 3457899999999999999988764 67999999999999999987654 24799999999876543 378999999
Q ss_pred cC----c--ccHHHHHHHHccccccCeEEEEEEcC-----CcHHH--------------HHHHHHHHHHhCCeEeEEeee
Q 022962 199 RA----V--AEMRILAEYCLPLVRVGGLFVAAKGH-----DPQEE--------------VKNSERAVQLMGASLLQLCSV 253 (289)
Q Consensus 199 n~----~--~~~~~ll~~~~~~LkpgG~l~~~~g~-----~~~~e--------------i~~~~~~l~~~g~~~~~~~~~ 253 (289)
+. . .+...+++++.++|||||++++.... ...++ ..+..+.++.+||..++....
T Consensus 124 ~~~l~h~~~~d~~~~l~~i~r~LkPGG~lvi~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~~d~ 203 (263)
T PTZ00098 124 RDAILHLSYADKKKLFEKCYKWLKPNGILLITDYCADKIENWDEEFKAYIKKRKYTLIPIQEYGDLIKSCNFQNVVAKDI 203 (263)
T ss_pred hhhHHhCCHHHHHHHHHHHHHHcCCCcEEEEEEeccccccCcHHHHHHHHHhcCCCCCCHHHHHHHHHHCCCCeeeEEeC
Confidence 63 1 36789999999999999999976421 11111 134556778889988776543
No 52
>PLN03075 nicotianamine synthase; Provisional
Probab=99.63 E-value=8.9e-15 Score=132.01 Aligned_cols=145 Identities=17% Similarity=0.112 Sum_probs=105.9
Q ss_pred CCCeEEEEcCCCChH-HHHHH-HHCCCCEEEEEeCChHHHHHHHHHHHH-cCCC-CEEEEeccccccCCCCcCCCCceEE
Q 022962 121 SNLKLVDVGTGAGLP-GLVLA-IACPDWKVTLLESMNKRCVFLEHAVSL-TQLL-NVQIVRGRAETLGKDVSFREQYDVA 196 (289)
Q Consensus 121 ~~~~VLDiGcG~G~~-~l~la-~~~p~~~V~~iD~s~~~l~~a~~~~~~-~~l~-ni~~~~~d~~~~~~~~~~~~~fD~V 196 (289)
.+.+|+|||||.|-+ ++.++ ..+|+++++++|+|+++++.|++.++. .++. +|+|..+|+.+.... .+.||+|
T Consensus 123 ~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~~~~~---l~~FDlV 199 (296)
T PLN03075 123 VPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLSKRMFFHTADVMDVTES---LKEYDVV 199 (296)
T ss_pred CCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCccCCcEEEECchhhcccc---cCCcCEE
Confidence 478999999997733 44444 457999999999999999999999965 7775 499999999876321 2679999
Q ss_pred EEcCc-----ccHHHHHHHHccccccCeEEEEEEcCCcHHHHH-HHHHHHHHhCCeEeEEeeeecCCCCCceEEEEEEec
Q 022962 197 VARAV-----AEMRILAEYCLPLVRVGGLFVAAKGHDPQEEVK-NSERAVQLMGASLLQLCSVESQSPFGQRTAVVCLKS 270 (289)
Q Consensus 197 ~sn~~-----~~~~~ll~~~~~~LkpgG~l~~~~g~~~~~ei~-~~~~~l~~~g~~~~~~~~~~~~~~~~~r~lv~~~k~ 270 (289)
++++. .+...+++.+.+.|+|||.+++-.+. ....+- ....-....||+...+ .+|..+--...|+++|.
T Consensus 200 F~~ALi~~dk~~k~~vL~~l~~~LkPGG~Lvlr~~~-G~r~~LYp~v~~~~~~gf~~~~~---~~P~~~v~Nsvi~~r~~ 275 (296)
T PLN03075 200 FLAALVGMDKEEKVKVIEHLGKHMAPGALLMLRSAH-GARAFLYPVVDPCDLRGFEVLSV---FHPTDEVINSVIIARKP 275 (296)
T ss_pred EEecccccccccHHHHHHHHHHhcCCCcEEEEeccc-chHhhcCCCCChhhCCCeEEEEE---ECCCCCceeeEEEEEee
Confidence 99963 57899999999999999999986532 211110 0000011238865443 47877777888888887
Q ss_pred CC
Q 022962 271 RR 272 (289)
Q Consensus 271 ~~ 272 (289)
..
T Consensus 276 ~~ 277 (296)
T PLN03075 276 GG 277 (296)
T ss_pred cC
Confidence 53
No 53
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=99.63 E-value=2.8e-15 Score=133.81 Aligned_cols=94 Identities=21% Similarity=0.203 Sum_probs=81.9
Q ss_pred CCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCcCCCCceEEEEcC
Q 022962 121 SNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARA 200 (289)
Q Consensus 121 ~~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~~~~~fD~V~sn~ 200 (289)
++.+|||||||+|.++..++...|+.+|+|+|+|+.|++.|++. +++++++|++++.. .++||+|+|+.
T Consensus 29 ~~~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s~~~~~~a~~~-------~~~~~~~d~~~~~~----~~~fD~v~~~~ 97 (255)
T PRK14103 29 RARRVVDLGCGPGNLTRYLARRWPGAVIEALDSSPEMVAAARER-------GVDARTGDVRDWKP----KPDTDVVVSNA 97 (255)
T ss_pred CCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHhc-------CCcEEEcChhhCCC----CCCceEEEEeh
Confidence 37899999999999999999888889999999999999988762 57899999987642 36899999985
Q ss_pred ----cccHHHHHHHHccccccCeEEEEEE
Q 022962 201 ----VAEMRILAEYCLPLVRVGGLFVAAK 225 (289)
Q Consensus 201 ----~~~~~~ll~~~~~~LkpgG~l~~~~ 225 (289)
+.+...++++++++|||||.+++..
T Consensus 98 ~l~~~~d~~~~l~~~~~~LkpgG~l~~~~ 126 (255)
T PRK14103 98 ALQWVPEHADLLVRWVDELAPGSWIAVQV 126 (255)
T ss_pred hhhhCCCHHHHHHHHHHhCCCCcEEEEEc
Confidence 4578899999999999999999854
No 54
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=99.63 E-value=2.8e-15 Score=140.22 Aligned_cols=100 Identities=14% Similarity=0.141 Sum_probs=85.0
Q ss_pred CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCC---CEEEEeccccccCCCCcCCCCceEEEE
Q 022962 122 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLL---NVQIVRGRAETLGKDVSFREQYDVAVA 198 (289)
Q Consensus 122 ~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~---ni~~~~~d~~~~~~~~~~~~~fD~V~s 198 (289)
+.+|||+|||+|.+++.++..+|..+|+++|+|+.+++.+++|++.++.+ +++++.+|..+... +++||+|+|
T Consensus 229 ~~~VLDLGCGtGvi~i~la~~~P~~~V~~vD~S~~Av~~A~~N~~~n~~~~~~~v~~~~~D~l~~~~----~~~fDlIls 304 (378)
T PRK15001 229 EGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSGVE----PFRFNAVLC 304 (378)
T ss_pred CCeEEEEeccccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCcccCceEEEEEccccccCC----CCCEEEEEE
Confidence 46999999999999999999999999999999999999999999888643 68999888754321 257999999
Q ss_pred cCc---------ccHHHHHHHHccccccCeEEEEEE
Q 022962 199 RAV---------AEMRILAEYCLPLVRVGGLFVAAK 225 (289)
Q Consensus 199 n~~---------~~~~~ll~~~~~~LkpgG~l~~~~ 225 (289)
|.. .....+++.+.++|+|||.|+++.
T Consensus 305 NPPfh~~~~~~~~ia~~l~~~a~~~LkpGG~L~iV~ 340 (378)
T PRK15001 305 NPPFHQQHALTDNVAWEMFHHARRCLKINGELYIVA 340 (378)
T ss_pred CcCcccCccCCHHHHHHHHHHHHHhcccCCEEEEEE
Confidence 942 124688999999999999999885
No 55
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=99.62 E-value=7.3e-15 Score=132.26 Aligned_cols=99 Identities=16% Similarity=0.177 Sum_probs=79.4
Q ss_pred CCCCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCC-CEEEEeccccccCCCCcCCCCceEEE
Q 022962 119 CNSNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLL-NVQIVRGRAETLGKDVSFREQYDVAV 197 (289)
Q Consensus 119 ~~~~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~-ni~~~~~d~~~~~~~~~~~~~fD~V~ 197 (289)
+++|.+|||||||.|.+++.+|+.+ +++|+||.+|++..+.+++.+++.|+. ++++...|..+++ .+||.|+
T Consensus 60 l~~G~~vLDiGcGwG~~~~~~a~~~-g~~v~gitlS~~Q~~~a~~~~~~~gl~~~v~v~~~D~~~~~------~~fD~Iv 132 (273)
T PF02353_consen 60 LKPGDRVLDIGCGWGGLAIYAAERY-GCHVTGITLSEEQAEYARERIREAGLEDRVEVRLQDYRDLP------GKFDRIV 132 (273)
T ss_dssp --TT-EEEEES-TTSHHHHHHHHHH---EEEEEES-HHHHHHHHHHHHCSTSSSTEEEEES-GGG---------S-SEEE
T ss_pred CCCCCEEEEeCCCccHHHHHHHHHc-CcEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEeeccccC------CCCCEEE
Confidence 4469999999999999999999987 789999999999999999999999986 4999999988764 4899999
Q ss_pred EcC------cccHHHHHHHHccccccCeEEEEE
Q 022962 198 ARA------VAEMRILAEYCLPLVRVGGLFVAA 224 (289)
Q Consensus 198 sn~------~~~~~~ll~~~~~~LkpgG~l~~~ 224 (289)
|-. ..+++.+++.+.++|||||++++.
T Consensus 133 Si~~~Ehvg~~~~~~~f~~~~~~LkpgG~~~lq 165 (273)
T PF02353_consen 133 SIEMFEHVGRKNYPAFFRKISRLLKPGGRLVLQ 165 (273)
T ss_dssp EESEGGGTCGGGHHHHHHHHHHHSETTEEEEEE
T ss_pred EEechhhcChhHHHHHHHHHHHhcCCCcEEEEE
Confidence 973 257899999999999999999854
No 56
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=99.62 E-value=4e-15 Score=132.90 Aligned_cols=100 Identities=17% Similarity=0.222 Sum_probs=90.3
Q ss_pred CCCCCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCC-CEEEEeccccccCCCCcCCCCceEE
Q 022962 118 SCNSNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLL-NVQIVRGRAETLGKDVSFREQYDVA 196 (289)
Q Consensus 118 ~~~~~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~-ni~~~~~d~~~~~~~~~~~~~fD~V 196 (289)
.+++|++|||||||.|.+++.+|+.+ +.+|+|+++|+++.+.+++.++..|++ +|++...|..++. ++||-|
T Consensus 69 ~L~~G~~lLDiGCGWG~l~~~aA~~y-~v~V~GvTlS~~Q~~~~~~r~~~~gl~~~v~v~l~d~rd~~------e~fDrI 141 (283)
T COG2230 69 GLKPGMTLLDIGCGWGGLAIYAAEEY-GVTVVGVTLSEEQLAYAEKRIAARGLEDNVEVRLQDYRDFE------EPFDRI 141 (283)
T ss_pred CCCCCCEEEEeCCChhHHHHHHHHHc-CCEEEEeeCCHHHHHHHHHHHHHcCCCcccEEEeccccccc------ccccee
Confidence 35579999999999999999999988 899999999999999999999999997 7999999998874 569999
Q ss_pred EEcC------cccHHHHHHHHccccccCeEEEEE
Q 022962 197 VARA------VAEMRILAEYCLPLVRVGGLFVAA 224 (289)
Q Consensus 197 ~sn~------~~~~~~ll~~~~~~LkpgG~l~~~ 224 (289)
+|-. ..+++.+++.+.++|+|||.+++-
T Consensus 142 vSvgmfEhvg~~~~~~ff~~~~~~L~~~G~~llh 175 (283)
T COG2230 142 VSVGMFEHVGKENYDDFFKKVYALLKPGGRMLLH 175 (283)
T ss_pred eehhhHHHhCcccHHHHHHHHHhhcCCCceEEEE
Confidence 9973 456999999999999999999864
No 57
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=99.62 E-value=1.2e-14 Score=130.27 Aligned_cols=100 Identities=19% Similarity=0.257 Sum_probs=86.4
Q ss_pred CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCcCCCCceEEEEcC-
Q 022962 122 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARA- 200 (289)
Q Consensus 122 ~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~~~~~fD~V~sn~- 200 (289)
+.+|||+|||.|.+|+.+|+..|..+|+.+|+|..+++.+++|++.+++++..+..+|+.+-. .++||+|+||+
T Consensus 159 ~~~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn~~Av~~ar~Nl~~N~~~~~~v~~s~~~~~v-----~~kfd~IisNPP 233 (300)
T COG2813 159 GGKVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVESARKNLAANGVENTEVWASNLYEPV-----EGKFDLIISNPP 233 (300)
T ss_pred CCcEEEeCCCccHHHHHHHHhCCCCeEEEEecCHHHHHHHHHhHHHcCCCccEEEEecccccc-----cccccEEEeCCC
Confidence 459999999999999999999999999999999999999999999999988767777776532 25899999994
Q ss_pred ----ccc----HHHHHHHHccccccCeEEEEEEc
Q 022962 201 ----VAE----MRILAEYCLPLVRVGGLFVAAKG 226 (289)
Q Consensus 201 ----~~~----~~~ll~~~~~~LkpgG~l~~~~g 226 (289)
... -.+++..+.+.|++||.|+++..
T Consensus 234 fh~G~~v~~~~~~~~i~~A~~~L~~gGeL~iVan 267 (300)
T COG2813 234 FHAGKAVVHSLAQEIIAAAARHLKPGGELWIVAN 267 (300)
T ss_pred ccCCcchhHHHHHHHHHHHHHhhccCCEEEEEEc
Confidence 122 35899999999999999998764
No 58
>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]
Probab=99.61 E-value=1.7e-15 Score=132.28 Aligned_cols=95 Identities=20% Similarity=0.289 Sum_probs=80.2
Q ss_pred CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCC------CEEEEeccccccCCCCcCCCCceE
Q 022962 122 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLL------NVQIVRGRAETLGKDVSFREQYDV 195 (289)
Q Consensus 122 ~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~------ni~~~~~d~~~~~~~~~~~~~fD~ 195 (289)
|.+|||+|||+|.++..||+. +++|+|||++++|++.|++.+...... .+++.+.++++.. ++||.
T Consensus 90 g~~ilDvGCGgGLLSepLArl--ga~V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~E~~~------~~fDa 161 (282)
T KOG1270|consen 90 GMKILDVGCGGGLLSEPLARL--GAQVTGIDASDDMVEVANEHKKMDPVLEGAIAYRLEYEDTDVEGLT------GKFDA 161 (282)
T ss_pred CceEEEeccCccccchhhHhh--CCeeEeecccHHHHHHHHHhhhcCchhccccceeeehhhcchhhcc------cccce
Confidence 678999999999999999987 689999999999999999985443321 2566777777653 56999
Q ss_pred EEEcC----cccHHHHHHHHccccccCeEEEEE
Q 022962 196 AVARA----VAEMRILAEYCLPLVRVGGLFVAA 224 (289)
Q Consensus 196 V~sn~----~~~~~~ll~~~~~~LkpgG~l~~~ 224 (289)
|+|.. ++++..+++.+.+.|||||.+++.
T Consensus 162 VvcsevleHV~dp~~~l~~l~~~lkP~G~lfit 194 (282)
T KOG1270|consen 162 VVCSEVLEHVKDPQEFLNCLSALLKPNGRLFIT 194 (282)
T ss_pred eeeHHHHHHHhCHHHHHHHHHHHhCCCCceEee
Confidence 99985 678999999999999999999964
No 59
>PRK14967 putative methyltransferase; Provisional
Probab=99.61 E-value=1.6e-14 Score=126.48 Aligned_cols=122 Identities=18% Similarity=0.195 Sum_probs=94.9
Q ss_pred CCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCcCCCCceEEEEcC
Q 022962 121 SNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARA 200 (289)
Q Consensus 121 ~~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~~~~~fD~V~sn~ 200 (289)
++.+|||+|||+|.+++.++.. +..+|+++|+|+.+++.+++|++.++. +++++++|+.+... +++||+|++|.
T Consensus 36 ~~~~vLDlGcG~G~~~~~la~~-~~~~v~~vD~s~~~l~~a~~n~~~~~~-~~~~~~~d~~~~~~----~~~fD~Vi~np 109 (223)
T PRK14967 36 PGRRVLDLCTGSGALAVAAAAA-GAGSVTAVDISRRAVRSARLNALLAGV-DVDVRRGDWARAVE----FRPFDVVVSNP 109 (223)
T ss_pred CCCeEEEecCCHHHHHHHHHHc-CCCeEEEEECCHHHHHHHHHHHHHhCC-eeEEEECchhhhcc----CCCeeEEEECC
Confidence 4689999999999999998865 445999999999999999999998887 68899999876422 36899999983
Q ss_pred c-------------------------ccHHHHHHHHccccccCeEEEEEEcCC-cHHHHHHHHHHHHHhCCeEeEEe
Q 022962 201 V-------------------------AEMRILAEYCLPLVRVGGLFVAAKGHD-PQEEVKNSERAVQLMGASLLQLC 251 (289)
Q Consensus 201 ~-------------------------~~~~~ll~~~~~~LkpgG~l~~~~g~~-~~~ei~~~~~~l~~~g~~~~~~~ 251 (289)
. ..+..+++++.++|||||++++..... ... ++.+.++..|+.+....
T Consensus 110 Py~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~~~~~~~~~~~---~~~~~l~~~g~~~~~~~ 183 (223)
T PRK14967 110 PYVPAPPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLLLVQSELSGVE---RTLTRLSEAGLDAEVVA 183 (223)
T ss_pred CCCCCCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcEEEEEEecccCHH---HHHHHHHHCCCCeEEEE
Confidence 1 014678899999999999999876543 333 34455667888655443
No 60
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=99.61 E-value=5.9e-14 Score=122.97 Aligned_cols=100 Identities=22% Similarity=0.223 Sum_probs=85.4
Q ss_pred CCeEEEEcCCCChHHHHHHHHCC-CCEEEEEeCChHHHHHHHHHHHHcCCC-CEEEEeccccccCCCCcCCCCceEEEEc
Q 022962 122 NLKLVDVGTGAGLPGLVLAIACP-DWKVTLLESMNKRCVFLEHAVSLTQLL-NVQIVRGRAETLGKDVSFREQYDVAVAR 199 (289)
Q Consensus 122 ~~~VLDiGcG~G~~~l~la~~~p-~~~V~~iD~s~~~l~~a~~~~~~~~l~-ni~~~~~d~~~~~~~~~~~~~fD~V~sn 199 (289)
+.+|||+|||+|..+..++...+ ..+|+++|+++.+++.+++++...+.. +++++.+|+.+.+.. .++||+|+++
T Consensus 52 ~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~---~~~~D~I~~~ 128 (239)
T PRK00216 52 GDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGLSGNVEFVQGDAEALPFP---DNSFDAVTIA 128 (239)
T ss_pred CCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcccccccCeEEEecccccCCCC---CCCccEEEEe
Confidence 67999999999999999998876 689999999999999999988765543 599999999886542 3689999986
Q ss_pred C----cccHHHHHHHHccccccCeEEEEE
Q 022962 200 A----VAEMRILAEYCLPLVRVGGLFVAA 224 (289)
Q Consensus 200 ~----~~~~~~ll~~~~~~LkpgG~l~~~ 224 (289)
. ..+...+++.+.++|+|||.+++.
T Consensus 129 ~~l~~~~~~~~~l~~~~~~L~~gG~li~~ 157 (239)
T PRK00216 129 FGLRNVPDIDKALREMYRVLKPGGRLVIL 157 (239)
T ss_pred cccccCCCHHHHHHHHHHhccCCcEEEEE
Confidence 3 457889999999999999999875
No 61
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=99.61 E-value=4.4e-15 Score=116.26 Aligned_cols=103 Identities=18% Similarity=0.192 Sum_probs=85.8
Q ss_pred CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCC-CCEEEEeccccccCCCCcCCCCceEEEEcC
Q 022962 122 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQL-LNVQIVRGRAETLGKDVSFREQYDVAVARA 200 (289)
Q Consensus 122 ~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l-~ni~~~~~d~~~~~~~~~~~~~fD~V~sn~ 200 (289)
|.+|||+|||+|.+++.+++.. ..+++|+|+++.+++.++.++..+++ ++++++++|+.+.... ...++||+|++|.
T Consensus 1 g~~vlD~~~G~G~~~~~~~~~~-~~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~-~~~~~~D~Iv~np 78 (117)
T PF13659_consen 1 GDRVLDPGCGSGTFLLAALRRG-AARVTGVDIDPEAVELARRNLPRNGLDDRVEVIVGDARDLPEP-LPDGKFDLIVTNP 78 (117)
T ss_dssp TEEEEEETSTTCHHHHHHHHHC-TCEEEEEESSHHHHHHHHHHCHHCTTTTTEEEEESHHHHHHHT-CTTT-EEEEEE--
T ss_pred CCEEEEcCcchHHHHHHHHHHC-CCeEEEEEECHHHHHHHHHHHHHccCCceEEEEECchhhchhh-ccCceeEEEEECC
Confidence 4589999999999999999886 78999999999999999999999987 4799999999987521 1247899999993
Q ss_pred c------------ccHHHHHHHHccccccCeEEEEEEc
Q 022962 201 V------------AEMRILAEYCLPLVRVGGLFVAAKG 226 (289)
Q Consensus 201 ~------------~~~~~ll~~~~~~LkpgG~l~~~~g 226 (289)
. .....+++.+.++|+|||.+++..+
T Consensus 79 P~~~~~~~~~~~~~~~~~~~~~~~~~L~~gG~~~~~~~ 116 (117)
T PF13659_consen 79 PYGPRSGDKAALRRLYSRFLEAAARLLKPGGVLVFITP 116 (117)
T ss_dssp STTSBTT----GGCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred CCccccccchhhHHHHHHHHHHHHHHcCCCeEEEEEeC
Confidence 1 1357899999999999999998753
No 62
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=99.61 E-value=5e-15 Score=127.13 Aligned_cols=96 Identities=18% Similarity=0.210 Sum_probs=80.5
Q ss_pred CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCcCCCCceEEEEcCc
Q 022962 122 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARAV 201 (289)
Q Consensus 122 ~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~~~~~fD~V~sn~~ 201 (289)
+.+|||+|||+|..++.+|.. +.+|+|+|+|+.+++.++++++..+++ +++...|+...+. +++||+|+++.+
T Consensus 31 ~~~vLDiGcG~G~~a~~la~~--g~~V~~iD~s~~~l~~a~~~~~~~~~~-v~~~~~d~~~~~~----~~~fD~I~~~~~ 103 (195)
T TIGR00477 31 PCKTLDLGCGQGRNSLYLSLA--GYDVRAWDHNPASIASVLDMKARENLP-LRTDAYDINAAAL----NEDYDFIFSTVV 103 (195)
T ss_pred CCcEEEeCCCCCHHHHHHHHC--CCeEEEEECCHHHHHHHHHHHHHhCCC-ceeEeccchhccc----cCCCCEEEEecc
Confidence 569999999999999999974 679999999999999999998888874 7888888765433 367999998742
Q ss_pred ------ccHHHHHHHHccccccCeEEEEE
Q 022962 202 ------AEMRILAEYCLPLVRVGGLFVAA 224 (289)
Q Consensus 202 ------~~~~~ll~~~~~~LkpgG~l~~~ 224 (289)
.+...+++.+.++|+|||++++.
T Consensus 104 ~~~~~~~~~~~~l~~~~~~LkpgG~lli~ 132 (195)
T TIGR00477 104 FMFLQAGRVPEIIANMQAHTRPGGYNLIV 132 (195)
T ss_pred cccCCHHHHHHHHHHHHHHhCCCcEEEEE
Confidence 35678999999999999996654
No 63
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=99.60 E-value=1.1e-14 Score=130.05 Aligned_cols=96 Identities=20% Similarity=0.228 Sum_probs=83.4
Q ss_pred CCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCcCCCCceEEEEcC
Q 022962 121 SNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARA 200 (289)
Q Consensus 121 ~~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~~~~~fD~V~sn~ 200 (289)
++.+|||||||+|.++..++..+|+.+|+|+|+|+.+++.++++ ..+++++.+|+.++.. .++||+|+++.
T Consensus 31 ~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~i~~a~~~-----~~~~~~~~~d~~~~~~----~~~fD~v~~~~ 101 (258)
T PRK01683 31 NPRYVVDLGCGPGNSTELLVERWPAARITGIDSSPAMLAEARSR-----LPDCQFVEADIASWQP----PQALDLIFANA 101 (258)
T ss_pred CCCEEEEEcccCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHh-----CCCCeEEECchhccCC----CCCccEEEEcc
Confidence 47899999999999999999888889999999999999999875 3468899999987643 26899999985
Q ss_pred ----cccHHHHHHHHccccccCeEEEEEE
Q 022962 201 ----VAEMRILAEYCLPLVRVGGLFVAAK 225 (289)
Q Consensus 201 ----~~~~~~ll~~~~~~LkpgG~l~~~~ 225 (289)
+.+...+++++.++|||||.+++..
T Consensus 102 ~l~~~~d~~~~l~~~~~~LkpgG~~~~~~ 130 (258)
T PRK01683 102 SLQWLPDHLELFPRLVSLLAPGGVLAVQM 130 (258)
T ss_pred ChhhCCCHHHHHHHHHHhcCCCcEEEEEC
Confidence 3477899999999999999998864
No 64
>PTZ00146 fibrillarin; Provisional
Probab=99.60 E-value=5.9e-14 Score=126.30 Aligned_cols=147 Identities=16% Similarity=0.159 Sum_probs=100.4
Q ss_pred CCCCCeEEEEcCCCChHHHHHHHHC-CCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCcCCCCceEEE
Q 022962 119 CNSNLKLVDVGTGAGLPGLVLAIAC-PDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAV 197 (289)
Q Consensus 119 ~~~~~~VLDiGcG~G~~~l~la~~~-p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~~~~~fD~V~ 197 (289)
++++.+|||+|||+|.++..+|... +...|+|||+++++.+.+.+.++.. .||.++.+|+..........++||+|+
T Consensus 130 IkpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~r--~NI~~I~~Da~~p~~y~~~~~~vDvV~ 207 (293)
T PTZ00146 130 IKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKKR--PNIVPIIEDARYPQKYRMLVPMVDVIF 207 (293)
T ss_pred cCCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhc--CCCEEEECCccChhhhhcccCCCCEEE
Confidence 3458899999999999999999876 4579999999998775555544432 589999999864210001125799999
Q ss_pred EcCc-c-cHHHHHHHHccccccCeEEEEEE-------cCCcHHHHHHHHHHHHHhCCeEeEEeeeecCCCCCceE-EEEE
Q 022962 198 ARAV-A-EMRILAEYCLPLVRVGGLFVAAK-------GHDPQEEVKNSERAVQLMGASLLQLCSVESQSPFGQRT-AVVC 267 (289)
Q Consensus 198 sn~~-~-~~~~ll~~~~~~LkpgG~l~~~~-------g~~~~~ei~~~~~~l~~~g~~~~~~~~~~~~~~~~~r~-lv~~ 267 (289)
+... . +...++.++.++|||||.|++.. ++...+.+.+-.+.+++.||++++...+ .++...+ +|+.
T Consensus 208 ~Dva~pdq~~il~~na~r~LKpGG~~vI~ika~~id~g~~pe~~f~~ev~~L~~~GF~~~e~v~L---~Py~~~h~~v~~ 284 (293)
T PTZ00146 208 ADVAQPDQARIVALNAQYFLKNGGHFIISIKANCIDSTAKPEVVFASEVQKLKKEGLKPKEQLTL---EPFERDHAVVIG 284 (293)
T ss_pred EeCCCcchHHHHHHHHHHhccCCCEEEEEEeccccccCCCHHHHHHHHHHHHHHcCCceEEEEec---CCccCCcEEEEE
Confidence 9742 2 34466778999999999999842 2223333443346688899998888755 2343333 4444
Q ss_pred Eec
Q 022962 268 LKS 270 (289)
Q Consensus 268 ~k~ 270 (289)
..+
T Consensus 285 ~~~ 287 (293)
T PTZ00146 285 VYR 287 (293)
T ss_pred EEc
Confidence 443
No 65
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=99.60 E-value=7.9e-15 Score=127.70 Aligned_cols=103 Identities=23% Similarity=0.301 Sum_probs=85.2
Q ss_pred CCCCeEEEEcCCCChHHHHHHHHCC-CCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCcCCCCceEEEE
Q 022962 120 NSNLKLVDVGTGAGLPGLVLAIACP-DWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVA 198 (289)
Q Consensus 120 ~~~~~VLDiGcG~G~~~l~la~~~p-~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~~~~~fD~V~s 198 (289)
.++.+|||||||+|..+..+|...+ +.+|+++|+++.+++.|+++++.++++|++++++|+.+.... ..+||+|++
T Consensus 76 ~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~~~v~~~~~d~~~~~~~---~~~fD~Ii~ 152 (215)
T TIGR00080 76 KPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGLDNVIVIVGDGTQGWEP---LAPYDRIYV 152 (215)
T ss_pred CCcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCeEEEECCcccCCcc---cCCCCEEEE
Confidence 3578999999999999999998754 578999999999999999999999998999999999765322 258999998
Q ss_pred cCcccHHHHHHHHccccccCeEEEEEEcC
Q 022962 199 RAVAEMRILAEYCLPLVRVGGLFVAAKGH 227 (289)
Q Consensus 199 n~~~~~~~ll~~~~~~LkpgG~l~~~~g~ 227 (289)
++.. ..+.+.+.+.|+|||++++..+.
T Consensus 153 ~~~~--~~~~~~~~~~L~~gG~lv~~~~~ 179 (215)
T TIGR00080 153 TAAG--PKIPEALIDQLKEGGILVMPVGE 179 (215)
T ss_pred cCCc--ccccHHHHHhcCcCcEEEEEEcC
Confidence 7532 33445667889999999987653
No 66
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.60 E-value=1.1e-14 Score=126.65 Aligned_cols=104 Identities=19% Similarity=0.281 Sum_probs=84.8
Q ss_pred CCCCCeEEEEcCCCChHHHHHHHHC-CCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCcCCCCceEEE
Q 022962 119 CNSNLKLVDVGTGAGLPGLVLAIAC-PDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAV 197 (289)
Q Consensus 119 ~~~~~~VLDiGcG~G~~~l~la~~~-p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~~~~~fD~V~ 197 (289)
+.++.+|||||||+|..+..++... +..+|+++|+++++++.++++++.++.+|++++++|..+.... ..+||+|+
T Consensus 74 ~~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~~~v~~~~gd~~~~~~~---~~~fD~I~ 150 (212)
T PRK13942 74 LKEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGYDNVEVIVGDGTLGYEE---NAPYDRIY 150 (212)
T ss_pred CCCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCcccCCCc---CCCcCEEE
Confidence 3458899999999999999998775 4579999999999999999999999998999999998764332 36899999
Q ss_pred EcCcccHHHHHHHHccccccCeEEEEEEcC
Q 022962 198 ARAVAEMRILAEYCLPLVRVGGLFVAAKGH 227 (289)
Q Consensus 198 sn~~~~~~~ll~~~~~~LkpgG~l~~~~g~ 227 (289)
+.+.. ..+.+.+.+.|||||++++..+.
T Consensus 151 ~~~~~--~~~~~~l~~~LkpgG~lvi~~~~ 178 (212)
T PRK13942 151 VTAAG--PDIPKPLIEQLKDGGIMVIPVGS 178 (212)
T ss_pred ECCCc--ccchHHHHHhhCCCcEEEEEEcC
Confidence 87532 22344566789999999987653
No 67
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=99.60 E-value=3e-15 Score=114.68 Aligned_cols=91 Identities=23% Similarity=0.295 Sum_probs=75.3
Q ss_pred EEEEcCCCChHHHHHHHHC---CCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCcCCCCceEEEEc-C
Q 022962 125 LVDVGTGAGLPGLVLAIAC---PDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVAR-A 200 (289)
Q Consensus 125 VLDiGcG~G~~~l~la~~~---p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~~~~~fD~V~sn-~ 200 (289)
|||+|||+|..+..++..+ |..+++|+|+|++|++.++++....+. +++++++|+.+++.. .++||+|++. .
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~~-~~~~~~~D~~~l~~~---~~~~D~v~~~~~ 76 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDGP-KVRFVQADARDLPFS---DGKFDLVVCSGL 76 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTTT-TSEEEESCTTCHHHH---SSSEEEEEE-TT
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcCC-ceEEEECCHhHCccc---CCCeeEEEEcCC
Confidence 7999999999999999876 458999999999999999999888776 799999999998643 4799999994 3
Q ss_pred ------cccHHHHHHHHccccccCe
Q 022962 201 ------VAEMRILAEYCLPLVRVGG 219 (289)
Q Consensus 201 ------~~~~~~ll~~~~~~LkpgG 219 (289)
......+++++.++|+|||
T Consensus 77 ~~~~~~~~~~~~ll~~~~~~l~pgG 101 (101)
T PF13649_consen 77 SLHHLSPEELEALLRRIARLLRPGG 101 (101)
T ss_dssp GGGGSSHHHHHHHHHHHHHTEEEEE
T ss_pred ccCCCCHHHHHHHHHHHHHHhCCCC
Confidence 2357899999999999998
No 68
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=99.59 E-value=2.5e-14 Score=130.03 Aligned_cols=123 Identities=19% Similarity=0.186 Sum_probs=93.1
Q ss_pred CCCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCC-EEEEeccccccCCCCcCCCCceEEEE
Q 022962 120 NSNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLN-VQIVRGRAETLGKDVSFREQYDVAVA 198 (289)
Q Consensus 120 ~~~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~n-i~~~~~d~~~~~~~~~~~~~fD~V~s 198 (289)
.++.+|||+|||+|.+++.+++. +..+|+|+|+|+.+++.|++|+..+++.+ +.+..++.... .+++||+|++
T Consensus 158 ~~g~~VLDvGcGsG~lai~aa~~-g~~~V~avDid~~al~~a~~n~~~n~~~~~~~~~~~~~~~~-----~~~~fDlVva 231 (288)
T TIGR00406 158 LKDKNVIDVGCGSGILSIAALKL-GAAKVVGIDIDPLAVESARKNAELNQVSDRLQVKLIYLEQP-----IEGKADVIVA 231 (288)
T ss_pred CCCCEEEEeCCChhHHHHHHHHc-CCCeEEEEECCHHHHHHHHHHHHHcCCCcceEEEecccccc-----cCCCceEEEE
Confidence 35789999999999999888754 55799999999999999999999988763 66666653322 1368999999
Q ss_pred cCcc-cHHHHHHHHccccccCeEEEEEEcCCcHHHHHHHHHHHHHhCCeEeEEe
Q 022962 199 RAVA-EMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLLQLC 251 (289)
Q Consensus 199 n~~~-~~~~ll~~~~~~LkpgG~l~~~~g~~~~~ei~~~~~~l~~~g~~~~~~~ 251 (289)
|... .+..+++.+.++|||||++++ .|.. ..+..++.+.++.. |.+.++.
T Consensus 232 n~~~~~l~~ll~~~~~~LkpgG~li~-sgi~-~~~~~~v~~~~~~~-f~~~~~~ 282 (288)
T TIGR00406 232 NILAEVIKELYPQFSRLVKPGGWLIL-SGIL-ETQAQSVCDAYEQG-FTVVEIR 282 (288)
T ss_pred ecCHHHHHHHHHHHHHHcCCCcEEEE-EeCc-HhHHHHHHHHHHcc-CceeeEe
Confidence 9765 456899999999999999986 3432 23334455556555 7766553
No 69
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=99.59 E-value=1e-14 Score=132.41 Aligned_cols=96 Identities=20% Similarity=0.261 Sum_probs=83.3
Q ss_pred CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCcCCCCceEEEEcCc
Q 022962 122 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARAV 201 (289)
Q Consensus 122 ~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~~~~~fD~V~sn~~ 201 (289)
+.+|||+|||+|..++.+|.. +.+|+|+|+|+.+++.++++++..++ ++++...|+.+... +++||+|+++.+
T Consensus 121 ~~~vLDlGcG~G~~~~~la~~--g~~V~avD~s~~ai~~~~~~~~~~~l-~v~~~~~D~~~~~~----~~~fD~I~~~~v 193 (287)
T PRK12335 121 PGKALDLGCGQGRNSLYLALL--GFDVTAVDINQQSLENLQEIAEKENL-NIRTGLYDINSASI----QEEYDFILSTVV 193 (287)
T ss_pred CCCEEEeCCCCCHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHHcCC-ceEEEEechhcccc----cCCccEEEEcch
Confidence 459999999999999999874 68999999999999999999999888 79999888876543 478999999853
Q ss_pred ------ccHHHHHHHHccccccCeEEEEE
Q 022962 202 ------AEMRILAEYCLPLVRVGGLFVAA 224 (289)
Q Consensus 202 ------~~~~~ll~~~~~~LkpgG~l~~~ 224 (289)
..+..+++.+.++|+|||++++.
T Consensus 194 l~~l~~~~~~~~l~~~~~~LkpgG~~l~v 222 (287)
T PRK12335 194 LMFLNRERIPAIIKNMQEHTNPGGYNLIV 222 (287)
T ss_pred hhhCCHHHHHHHHHHHHHhcCCCcEEEEE
Confidence 35788999999999999997654
No 70
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.59 E-value=2.3e-14 Score=123.91 Aligned_cols=101 Identities=20% Similarity=0.311 Sum_probs=83.3
Q ss_pred CCCeEEEEcCCCChHHHHHHHHCC-CCEEEEEeCChHHHHHHHHHHHHcCCC-CEEEEeccccccCCCCcCCCCceEEEE
Q 022962 121 SNLKLVDVGTGAGLPGLVLAIACP-DWKVTLLESMNKRCVFLEHAVSLTQLL-NVQIVRGRAETLGKDVSFREQYDVAVA 198 (289)
Q Consensus 121 ~~~~VLDiGcG~G~~~l~la~~~p-~~~V~~iD~s~~~l~~a~~~~~~~~l~-ni~~~~~d~~~~~~~~~~~~~fD~V~s 198 (289)
++.+|||+|||+|..+..++...+ .++|+++|+++++++.|+++++.++.. +++++++|..+.... ..+||+|++
T Consensus 72 ~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~d~~~~~~~---~~~fD~Ii~ 148 (205)
T PRK13944 72 PGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGYWGVVEVYHGDGKRGLEK---HAPFDAIIV 148 (205)
T ss_pred CCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEECCcccCCcc---CCCccEEEE
Confidence 478999999999999999987764 579999999999999999999998875 599999999764322 368999999
Q ss_pred cCcccHHHHHHHHccccccCeEEEEEEc
Q 022962 199 RAVAEMRILAEYCLPLVRVGGLFVAAKG 226 (289)
Q Consensus 199 n~~~~~~~ll~~~~~~LkpgG~l~~~~g 226 (289)
+... ..+.+++.+.|+|||++++..+
T Consensus 149 ~~~~--~~~~~~l~~~L~~gG~lvi~~~ 174 (205)
T PRK13944 149 TAAA--STIPSALVRQLKDGGVLVIPVE 174 (205)
T ss_pred ccCc--chhhHHHHHhcCcCcEEEEEEc
Confidence 8643 2344677889999999988654
No 71
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=99.58 E-value=1.7e-14 Score=127.49 Aligned_cols=99 Identities=11% Similarity=0.140 Sum_probs=84.4
Q ss_pred CCeEEEEcCCCChHHHHHHHHC--CCCEEEEEeCChHHHHHHHHHHHHcCC-CCEEEEeccccccCCCCcCCCCceEEEE
Q 022962 122 NLKLVDVGTGAGLPGLVLAIAC--PDWKVTLLESMNKRCVFLEHAVSLTQL-LNVQIVRGRAETLGKDVSFREQYDVAVA 198 (289)
Q Consensus 122 ~~~VLDiGcG~G~~~l~la~~~--p~~~V~~iD~s~~~l~~a~~~~~~~~l-~ni~~~~~d~~~~~~~~~~~~~fD~V~s 198 (289)
+.+|||+|||+|..+..+++.. |+++|+|+|+|+.|++.|+++++..+. .+++++++|+.+++. ..+|+|++
T Consensus 54 ~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~~~~v~~~~~d~~~~~~-----~~~d~v~~ 128 (239)
T TIGR00740 54 DSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVEI-----KNASMVIL 128 (239)
T ss_pred CCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECChhhCCC-----CCCCEEee
Confidence 6799999999999999998763 789999999999999999999887664 369999999998764 35899998
Q ss_pred cCc------ccHHHHHHHHccccccCeEEEEEE
Q 022962 199 RAV------AEMRILAEYCLPLVRVGGLFVAAK 225 (289)
Q Consensus 199 n~~------~~~~~ll~~~~~~LkpgG~l~~~~ 225 (289)
+.. .+...+++++.++|+|||.+++..
T Consensus 129 ~~~l~~~~~~~~~~~l~~i~~~LkpgG~l~i~d 161 (239)
T TIGR00740 129 NFTLQFLPPEDRIALLTKIYEGLNPNGVLVLSE 161 (239)
T ss_pred ecchhhCCHHHHHHHHHHHHHhcCCCeEEEEee
Confidence 732 245789999999999999999864
No 72
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=99.57 E-value=7.6e-16 Score=117.38 Aligned_cols=95 Identities=19% Similarity=0.181 Sum_probs=65.0
Q ss_pred EEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCcCCCCceEEEEcC----c
Q 022962 126 VDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARA----V 201 (289)
Q Consensus 126 LDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~~~~~fD~V~sn~----~ 201 (289)
||||||+|.++..++..+|..+++|+|+|+.|++.++++....+..+...+..+..+.... ...++||+|++.. +
T Consensus 1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~fD~V~~~~vl~~l 79 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEELPDARYTGVDISPSMLERARERLAELGNDNFERLRFDVLDLFDY-DPPESFDLVVASNVLHHL 79 (99)
T ss_dssp -EESTTTS-TTTTHHHHC-EEEEEEEESSSSTTSTTCCCHHHCT---EEEEE--SSS---C-CC----SEEEEE-TTS--
T ss_pred CEeCccChHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCCcceeEEEeecCChhhc-ccccccceehhhhhHhhh
Confidence 7999999999999999989999999999999999999988887765555555554443221 1125899999984 4
Q ss_pred ccHHHHHHHHccccccCeEE
Q 022962 202 AEMRILAEYCLPLVRVGGLF 221 (289)
Q Consensus 202 ~~~~~ll~~~~~~LkpgG~l 221 (289)
.+++.+++.+.++|+|||.|
T Consensus 80 ~~~~~~l~~~~~~L~pgG~l 99 (99)
T PF08242_consen 80 EDIEAVLRNIYRLLKPGGIL 99 (99)
T ss_dssp S-HHHHHHHHTTT-TSS-EE
T ss_pred hhHHHHHHHHHHHcCCCCCC
Confidence 67899999999999999986
No 73
>PRK05785 hypothetical protein; Provisional
Probab=99.57 E-value=7.2e-14 Score=122.67 Aligned_cols=128 Identities=13% Similarity=0.066 Sum_probs=90.9
Q ss_pred HHHHHHHHHHHhhcCcCceeecChHHHHHhhhhhccccCCCCccccccccCCCCCCCCeEEEEcCCCChHHHHHHHHCCC
Q 022962 66 QIHLYVDALLQWNRKMNLTAVKDVNEVMERHIDDSLAIIPPIKNSYTSHCDSSCNSNLKLVDVGTGAGLPGLVLAIACPD 145 (289)
Q Consensus 66 ~l~~~~~~l~~~n~~~~l~~~~~~~~~~~~~~~~sl~~~~~~~~~~~~~~~~~~~~~~~VLDiGcG~G~~~l~la~~~p~ 145 (289)
.+..+++.+.......|-....+....|.+.+...+.... .++.+|||||||||.++..++... +
T Consensus 10 ~v~~~f~~iA~~YD~~n~~~s~g~~~~wr~~~~~~l~~~~--------------~~~~~VLDlGcGtG~~~~~l~~~~-~ 74 (226)
T PRK05785 10 ELQEAYNKIPKAYDRANRFISFNQDVRWRAELVKTILKYC--------------GRPKKVLDVAAGKGELSYHFKKVF-K 74 (226)
T ss_pred HHHHHHHhhhHHHHHhhhhccCCCcHHHHHHHHHHHHHhc--------------CCCCeEEEEcCCCCHHHHHHHHhc-C
Confidence 3445555555444444432223444556665554332211 126799999999999999998776 5
Q ss_pred CEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCcCCCCceEEEEcC----cccHHHHHHHHccccccCe
Q 022962 146 WKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARA----VAEMRILAEYCLPLVRVGG 219 (289)
Q Consensus 146 ~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~~~~~fD~V~sn~----~~~~~~ll~~~~~~LkpgG 219 (289)
.+|+|+|+|++|++.|++. ..++++|+++++.. +++||+|+++. +.+++.+++++.++|||.+
T Consensus 75 ~~v~gvD~S~~Ml~~a~~~--------~~~~~~d~~~lp~~---d~sfD~v~~~~~l~~~~d~~~~l~e~~RvLkp~~ 141 (226)
T PRK05785 75 YYVVALDYAENMLKMNLVA--------DDKVVGSFEALPFR---DKSFDVVMSSFALHASDNIEKVIAEFTRVSRKQV 141 (226)
T ss_pred CEEEEECCCHHHHHHHHhc--------cceEEechhhCCCC---CCCEEEEEecChhhccCCHHHHHHHHHHHhcCce
Confidence 7999999999999998763 13568899888654 47999999973 5688999999999999953
No 74
>PRK08317 hypothetical protein; Provisional
Probab=99.57 E-value=1.2e-13 Score=120.72 Aligned_cols=101 Identities=21% Similarity=0.238 Sum_probs=85.0
Q ss_pred CCCeEEEEcCCCChHHHHHHHHC-CCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCcCCCCceEEEEc
Q 022962 121 SNLKLVDVGTGAGLPGLVLAIAC-PDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVAR 199 (289)
Q Consensus 121 ~~~~VLDiGcG~G~~~l~la~~~-p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~~~~~fD~V~sn 199 (289)
++.+|||+|||+|.++..++..+ |..+|+|+|+|+.+++.++++... ...++++..+|+.+.+.. +++||+|+++
T Consensus 19 ~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~~~~d~~~~~~~---~~~~D~v~~~ 94 (241)
T PRK08317 19 PGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAG-LGPNVEFVRGDADGLPFP---DGSFDAVRSD 94 (241)
T ss_pred CCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhC-CCCceEEEecccccCCCC---CCCceEEEEe
Confidence 47899999999999999999877 678999999999999999987333 234799999999876543 3689999997
Q ss_pred C----cccHHHHHHHHccccccCeEEEEEE
Q 022962 200 A----VAEMRILAEYCLPLVRVGGLFVAAK 225 (289)
Q Consensus 200 ~----~~~~~~ll~~~~~~LkpgG~l~~~~ 225 (289)
. ..+...+++.+.++|+|||.+++..
T Consensus 95 ~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~ 124 (241)
T PRK08317 95 RVLQHLEDPARALAEIARVLRPGGRVVVLD 124 (241)
T ss_pred chhhccCCHHHHHHHHHHHhcCCcEEEEEe
Confidence 4 4578899999999999999998754
No 75
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=99.56 E-value=4.3e-14 Score=130.77 Aligned_cols=125 Identities=14% Similarity=0.025 Sum_probs=100.6
Q ss_pred CCCCCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCcCCCCceEEE
Q 022962 118 SCNSNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAV 197 (289)
Q Consensus 118 ~~~~~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~~~~~fD~V~ 197 (289)
..+++.+|||.|||+|.+++.++.. +.+|+|+|+|++|+..++.|++.++++++.++++|+.+++.. +++||+|+
T Consensus 179 ~~~~g~~vLDp~cGtG~~lieaa~~--~~~v~g~Di~~~~~~~a~~nl~~~g~~~i~~~~~D~~~l~~~---~~~~D~Iv 253 (329)
T TIGR01177 179 RVTEGDRVLDPFCGTGGFLIEAGLM--GAKVIGCDIDWKMVAGARINLEHYGIEDFFVKRGDATKLPLS---SESVDAIA 253 (329)
T ss_pred CCCCcCEEEECCCCCCHHHHHHHHh--CCeEEEEcCCHHHHHHHHHHHHHhCCCCCeEEecchhcCCcc---cCCCCEEE
Confidence 3456889999999999998886653 689999999999999999999999998899999999987653 36899999
Q ss_pred EcCc-------------ccHHHHHHHHccccccCeEEEEEEcCCcHHHHHHHHHHHHHhCCeEeEEeee
Q 022962 198 ARAV-------------AEMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLLQLCSV 253 (289)
Q Consensus 198 sn~~-------------~~~~~ll~~~~~~LkpgG~l~~~~g~~~~~ei~~~~~~l~~~g~~~~~~~~~ 253 (289)
+|+. .-+..+++.+.++|+|||++++...... ++ .+.++.+|| ++..+..
T Consensus 254 ~dPPyg~~~~~~~~~~~~l~~~~l~~~~r~Lk~gG~lv~~~~~~~--~~---~~~~~~~g~-i~~~~~~ 316 (329)
T TIGR01177 254 TDPPYGRSTTAAGDGLESLYERSLEEFHEVLKSEGWIVYAVPTRI--DL---ESLAEDAFR-VVKRFEV 316 (329)
T ss_pred ECCCCcCcccccCCchHHHHHHHHHHHHHHccCCcEEEEEEcCCC--CH---HHHHhhcCc-chheeee
Confidence 9831 1257899999999999999998775432 22 234568899 7776654
No 76
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=99.56 E-value=2e-13 Score=118.40 Aligned_cols=99 Identities=22% Similarity=0.306 Sum_probs=84.0
Q ss_pred CCeEEEEcCCCChHHHHHHHHCCC-CEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCcCCCCceEEEEcC
Q 022962 122 NLKLVDVGTGAGLPGLVLAIACPD-WKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARA 200 (289)
Q Consensus 122 ~~~VLDiGcG~G~~~l~la~~~p~-~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~~~~~fD~V~sn~ 200 (289)
+.+|||+|||+|..+..++...+. .+++++|+++.+++.++++.. ...+++++.+|+.+.+.. .++||+|+++.
T Consensus 40 ~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~--~~~~i~~~~~d~~~~~~~---~~~~D~i~~~~ 114 (223)
T TIGR01934 40 GQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSE--LPLNIEFIQADAEALPFE---DNSFDAVTIAF 114 (223)
T ss_pred CCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhc--cCCCceEEecchhcCCCC---CCcEEEEEEee
Confidence 679999999999999999988775 799999999999999988765 334699999999887542 36899999873
Q ss_pred ----cccHHHHHHHHccccccCeEEEEEE
Q 022962 201 ----VAEMRILAEYCLPLVRVGGLFVAAK 225 (289)
Q Consensus 201 ----~~~~~~ll~~~~~~LkpgG~l~~~~ 225 (289)
..++..+++.+.+.|+|||++++..
T Consensus 115 ~~~~~~~~~~~l~~~~~~L~~gG~l~~~~ 143 (223)
T TIGR01934 115 GLRNVTDIQKALREMYRVLKPGGRLVILE 143 (223)
T ss_pred eeCCcccHHHHHHHHHHHcCCCcEEEEEE
Confidence 5578899999999999999998743
No 77
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=99.56 E-value=2.9e-14 Score=132.24 Aligned_cols=99 Identities=18% Similarity=0.250 Sum_probs=84.9
Q ss_pred CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCcCCCCceEEEEcC-
Q 022962 122 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARA- 200 (289)
Q Consensus 122 ~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~~~~~fD~V~sn~- 200 (289)
..+|||+|||+|.+++.++...|..+|+++|+|+.+++.++++++.++++ .+++.+|+.+. ..++||+|+||.
T Consensus 197 ~g~VLDlGCG~G~ls~~la~~~p~~~v~~vDis~~Al~~A~~nl~~n~l~-~~~~~~D~~~~-----~~~~fDlIvsNPP 270 (342)
T PRK09489 197 KGKVLDVGCGAGVLSAVLARHSPKIRLTLSDVSAAALESSRATLAANGLE-GEVFASNVFSD-----IKGRFDMIISNPP 270 (342)
T ss_pred CCeEEEeccCcCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCC-CEEEEcccccc-----cCCCccEEEECCC
Confidence 45899999999999999999889899999999999999999999998874 57777777542 136899999994
Q ss_pred --------cccHHHHHHHHccccccCeEEEEEEc
Q 022962 201 --------VAEMRILAEYCLPLVRVGGLFVAAKG 226 (289)
Q Consensus 201 --------~~~~~~ll~~~~~~LkpgG~l~~~~g 226 (289)
....+.+++++.+.|||||.+++...
T Consensus 271 FH~g~~~~~~~~~~~i~~a~~~LkpgG~L~iVan 304 (342)
T PRK09489 271 FHDGIQTSLDAAQTLIRGAVRHLNSGGELRIVAN 304 (342)
T ss_pred ccCCccccHHHHHHHHHHHHHhcCcCCEEEEEEe
Confidence 12468999999999999999998764
No 78
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=99.55 E-value=6.5e-14 Score=119.20 Aligned_cols=96 Identities=20% Similarity=0.187 Sum_probs=80.4
Q ss_pred CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCcCCCCceEEEEcC-
Q 022962 122 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARA- 200 (289)
Q Consensus 122 ~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~~~~~fD~V~sn~- 200 (289)
+.++||+|||.|..++.||.. +..|+|+|.|+.+++.+++.++..+++ |+....|+++... ++.||+|+|..
T Consensus 31 ~g~~LDlgcG~GRNalyLA~~--G~~VtAvD~s~~al~~l~~~a~~~~l~-i~~~~~Dl~~~~~----~~~yD~I~st~v 103 (192)
T PF03848_consen 31 PGKALDLGCGEGRNALYLASQ--GFDVTAVDISPVALEKLQRLAEEEGLD-IRTRVADLNDFDF----PEEYDFIVSTVV 103 (192)
T ss_dssp SSEEEEES-TTSHHHHHHHHT--T-EEEEEESSHHHHHHHHHHHHHTT-T-EEEEE-BGCCBS-----TTTEEEEEEESS
T ss_pred CCcEEEcCCCCcHHHHHHHHC--CCeEEEEECCHHHHHHHHHHHhhcCce-eEEEEecchhccc----cCCcCEEEEEEE
Confidence 679999999999999999986 889999999999999999999998885 9999999988754 36899999852
Q ss_pred -----cccHHHHHHHHccccccCeEEEEE
Q 022962 201 -----VAEMRILAEYCLPLVRVGGLFVAA 224 (289)
Q Consensus 201 -----~~~~~~ll~~~~~~LkpgG~l~~~ 224 (289)
...++.+++.+...++|||+++++
T Consensus 104 ~~fL~~~~~~~i~~~m~~~~~pGG~~li~ 132 (192)
T PF03848_consen 104 FMFLQRELRPQIIENMKAATKPGGYNLIV 132 (192)
T ss_dssp GGGS-GGGHHHHHHHHHHTEEEEEEEEEE
T ss_pred eccCCHHHHHHHHHHHHhhcCCcEEEEEE
Confidence 235678999999999999998874
No 79
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=99.55 E-value=2.1e-14 Score=122.11 Aligned_cols=100 Identities=20% Similarity=0.226 Sum_probs=87.4
Q ss_pred CCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCcCCCCceEEEEcC
Q 022962 121 SNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARA 200 (289)
Q Consensus 121 ~~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~~~~~fD~V~sn~ 200 (289)
...+|.|+|||+|..+-.|++.+|++.|+|+|.|++|++.|+. .+.|++|..+|+.++..+ .++|++++|+
T Consensus 30 ~~~~v~DLGCGpGnsTelL~~RwP~A~i~GiDsS~~Mla~Aa~-----rlp~~~f~~aDl~~w~p~----~~~dllfaNA 100 (257)
T COG4106 30 RPRRVVDLGCGPGNSTELLARRWPDAVITGIDSSPAMLAKAAQ-----RLPDATFEEADLRTWKPE----QPTDLLFANA 100 (257)
T ss_pred ccceeeecCCCCCHHHHHHHHhCCCCeEeeccCCHHHHHHHHH-----hCCCCceecccHhhcCCC----Cccchhhhhh
Confidence 3679999999999999999999999999999999999998865 355899999999998653 6899999998
Q ss_pred c----ccHHHHHHHHccccccCeEEEEEEcCCc
Q 022962 201 V----AEMRILAEYCLPLVRVGGLFVAAKGHDP 229 (289)
Q Consensus 201 ~----~~~~~ll~~~~~~LkpgG~l~~~~g~~~ 229 (289)
+ .+...++......|.|||.+.+-+..+.
T Consensus 101 vlqWlpdH~~ll~rL~~~L~Pgg~LAVQmPdN~ 133 (257)
T COG4106 101 VLQWLPDHPELLPRLVSQLAPGGVLAVQMPDNL 133 (257)
T ss_pred hhhhccccHHHHHHHHHhhCCCceEEEECCCcc
Confidence 4 5678999999999999999998776543
No 80
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=99.55 E-value=2.2e-13 Score=130.89 Aligned_cols=144 Identities=12% Similarity=0.024 Sum_probs=107.4
Q ss_pred CCCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCcC-CCCceEEEE
Q 022962 120 NSNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSF-REQYDVAVA 198 (289)
Q Consensus 120 ~~~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~~-~~~fD~V~s 198 (289)
.++.+|||+|||+|.+++.+|.. ..+|+|+|+|+.|++.|++|++.++++|++++++|+.+......+ +++||+|++
T Consensus 296 ~~~~~VLDlgcGtG~~sl~la~~--~~~V~gvD~s~~al~~A~~n~~~~~~~~v~~~~~d~~~~l~~~~~~~~~fD~Vi~ 373 (443)
T PRK13168 296 QPGDRVLDLFCGLGNFTLPLARQ--AAEVVGVEGVEAMVERARENARRNGLDNVTFYHANLEEDFTDQPWALGGFDKVLL 373 (443)
T ss_pred CCCCEEEEEeccCCHHHHHHHHh--CCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEeChHHhhhhhhhhcCCCCEEEE
Confidence 45789999999999999999976 369999999999999999999999998999999999764211011 357999999
Q ss_pred cCc-ccHHHHHHHHccccccCeEEEEEEcCCcHHHHHHHHHHHHHhCCeEeEEeeee-cCCCCCceEEEEEEe
Q 022962 199 RAV-AEMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLLQLCSVE-SQSPFGQRTAVVCLK 269 (289)
Q Consensus 199 n~~-~~~~~ll~~~~~~LkpgG~l~~~~g~~~~~ei~~~~~~l~~~g~~~~~~~~~~-~~~~~~~r~lv~~~k 269 (289)
|.. ......++.+.+ ++|++.+++..++. --..++ ..+.+.||.+.++..++ +|....-..+++++|
T Consensus 374 dPPr~g~~~~~~~l~~-~~~~~ivyvSCnp~--tlaRDl-~~L~~~gY~l~~i~~~DmFP~T~HvE~v~lL~r 442 (443)
T PRK13168 374 DPPRAGAAEVMQALAK-LGPKRIVYVSCNPA--TLARDA-GVLVEAGYRLKRAGMLDMFPHTGHVESMALFER 442 (443)
T ss_pred CcCCcChHHHHHHHHh-cCCCeEEEEEeChH--HhhccH-HHHhhCCcEEEEEEEeccCCCCCcEEEEEEEEe
Confidence 952 234566666655 68999988876542 222222 23456799999999997 566555556666654
No 81
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=99.55 E-value=6.5e-13 Score=116.70 Aligned_cols=173 Identities=14% Similarity=0.198 Sum_probs=118.9
Q ss_pred CCCHHHHHHHHHHHHHHHHhhcCcCceeecChHHHHHhhhhhccccCCCCccccccccCCCCCCCCeEEEEcCCCChHHH
Q 022962 58 TLNTRQQEQIHLYVDALLQWNRKMNLTAVKDVNEVMERHIDDSLAIIPPIKNSYTSHCDSSCNSNLKLVDVGTGAGLPGL 137 (289)
Q Consensus 58 ~~~~~~~~~l~~~~~~l~~~n~~~~l~~~~~~~~~~~~~~~~sl~~~~~~~~~~~~~~~~~~~~~~~VLDiGcG~G~~~l 137 (289)
.++++|+..++.+.+++.. ..................+..... + .++.+|||||||+|.++.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~~~---~-------------~~~~~vLdiG~G~G~~~~ 64 (233)
T PRK05134 3 NVDPAEIAKFSALAARWWD--PNGEFKPLHRINPLRLNYIREHAG---G-------------LFGKRVLDVGCGGGILSE 64 (233)
T ss_pred cccHHHHHHHHHHHHHHhc--cCCCcHHHHHhhHHHHHHHHHhcc---C-------------CCCCeEEEeCCCCCHHHH
Confidence 4678899999999886652 222111112222221112222111 1 136799999999999998
Q ss_pred HHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCcCCCCceEEEEcC----cccHHHHHHHHcc
Q 022962 138 VLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARA----VAEMRILAEYCLP 213 (289)
Q Consensus 138 ~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~~~~~fD~V~sn~----~~~~~~ll~~~~~ 213 (289)
.+++. ..+|+++|+++.+++.++++....+. +++++..++.+.... ..++||+|+++. ..+...+++.+.+
T Consensus 65 ~l~~~--~~~v~~iD~s~~~~~~a~~~~~~~~~-~~~~~~~~~~~~~~~--~~~~fD~Ii~~~~l~~~~~~~~~l~~~~~ 139 (233)
T PRK05134 65 SMARL--GADVTGIDASEENIEVARLHALESGL-KIDYRQTTAEELAAE--HPGQFDVVTCMEMLEHVPDPASFVRACAK 139 (233)
T ss_pred HHHHc--CCeEEEEcCCHHHHHHHHHHHHHcCC-ceEEEecCHHHhhhh--cCCCccEEEEhhHhhccCCHHHHHHHHHH
Confidence 88864 57899999999999999998887766 688888888876421 236899999863 4577889999999
Q ss_pred ccccCeEEEEEEcCCcHH---------------------------HHHHHHHHHHHhCCeEeEEeee
Q 022962 214 LVRVGGLFVAAKGHDPQE---------------------------EVKNSERAVQLMGASLLQLCSV 253 (289)
Q Consensus 214 ~LkpgG~l~~~~g~~~~~---------------------------ei~~~~~~l~~~g~~~~~~~~~ 253 (289)
+|+|||.+++........ ...++.+.+++.||++++...+
T Consensus 140 ~L~~gG~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~v~~~~~ 206 (233)
T PRK05134 140 LVKPGGLVFFSTLNRNLKSYLLAIVGAEYVLRMLPKGTHDYKKFIKPSELAAWLRQAGLEVQDITGL 206 (233)
T ss_pred HcCCCcEEEEEecCCChHHHHHHHhhHHHHhhhcCcccCchhhcCCHHHHHHHHHHCCCeEeeeeeE
Confidence 999999998754211000 1134566778999998877544
No 82
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=99.53 E-value=1.3e-13 Score=128.81 Aligned_cols=104 Identities=16% Similarity=0.110 Sum_probs=89.7
Q ss_pred CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCcCCCCceEEEEcCc
Q 022962 122 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARAV 201 (289)
Q Consensus 122 ~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~~~~~fD~V~sn~~ 201 (289)
+..+||||||+|..++.+|..+|+..++|+|+++.+++.+.+++...+++|+.++++|+..+... ..++++|.|+++-.
T Consensus 123 ~p~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI~~~~i~~a~~ka~~~gL~NV~~i~~DA~~ll~~-~~~~s~D~I~lnFP 201 (390)
T PRK14121 123 EKILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHTPSIEQVLKQIELLNLKNLLIINYDARLLLEL-LPSNSVEKIFVHFP 201 (390)
T ss_pred CCeEEEEcCcccHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHhhhh-CCCCceeEEEEeCC
Confidence 56899999999999999999999999999999999999999999999999999999999765321 12478999999843
Q ss_pred ccH----------HHHHHHHccccccCeEEEEEEc
Q 022962 202 AEM----------RILAEYCLPLVRVGGLFVAAKG 226 (289)
Q Consensus 202 ~~~----------~~ll~~~~~~LkpgG~l~~~~g 226 (289)
.++ +.+++++.++|+|||.+.+...
T Consensus 202 dPW~KkrHRRlv~~~fL~e~~RvLkpGG~l~l~TD 236 (390)
T PRK14121 202 VPWDKKPHRRVISEDFLNEALRVLKPGGTLELRTD 236 (390)
T ss_pred CCccccchhhccHHHHHHHHHHHcCCCcEEEEEEE
Confidence 322 6899999999999999998653
No 83
>PRK06922 hypothetical protein; Provisional
Probab=99.53 E-value=7.8e-14 Score=136.70 Aligned_cols=104 Identities=16% Similarity=0.212 Sum_probs=87.1
Q ss_pred CCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCcCCCCceEEEEcC
Q 022962 121 SNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARA 200 (289)
Q Consensus 121 ~~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~~~~~fD~V~sn~ 200 (289)
++.+|||+|||+|..+..++..+|+.+|+|+|+|+.|++.|+++....+. ++.++++|+.+++.. ..+++||+|+++.
T Consensus 418 ~g~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS~~MLe~Ararl~~~g~-~ie~I~gDa~dLp~~-fedeSFDvVVsn~ 495 (677)
T PRK06922 418 KGDTIVDVGAGGGVMLDMIEEETEDKRIYGIDISENVIDTLKKKKQNEGR-SWNVIKGDAINLSSS-FEKESVDTIVYSS 495 (677)
T ss_pred CCCEEEEeCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCC-CeEEEEcchHhCccc-cCCCCEEEEEEch
Confidence 47899999999999999999888999999999999999999988766554 688999999886521 0137899999873
Q ss_pred c-----------------ccHHHHHHHHccccccCeEEEEEEc
Q 022962 201 V-----------------AEMRILAEYCLPLVRVGGLFVAAKG 226 (289)
Q Consensus 201 ~-----------------~~~~~ll~~~~~~LkpgG~l~~~~g 226 (289)
. .+...+++++.++|||||.+++..+
T Consensus 496 vLH~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII~D~ 538 (677)
T PRK06922 496 ILHELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIIIRDG 538 (677)
T ss_pred HHHhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEEEeC
Confidence 1 2467899999999999999999765
No 84
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=99.51 E-value=2.4e-13 Score=120.83 Aligned_cols=94 Identities=17% Similarity=0.177 Sum_probs=78.6
Q ss_pred CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCcCCCCceEEEEcC-
Q 022962 122 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARA- 200 (289)
Q Consensus 122 ~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~~~~~fD~V~sn~- 200 (289)
+.+|||+|||+|.++..++.. +.+|+++|+|+.|++.++++.. .+.++++|+++++.. +++||+|+++.
T Consensus 43 ~~~vLDiGcG~G~~~~~l~~~--~~~v~~~D~s~~~l~~a~~~~~-----~~~~~~~d~~~~~~~---~~~fD~V~s~~~ 112 (251)
T PRK10258 43 FTHVLDAGCGPGWMSRYWRER--GSQVTALDLSPPMLAQARQKDA-----ADHYLAGDIESLPLA---TATFDLAWSNLA 112 (251)
T ss_pred CCeEEEeeCCCCHHHHHHHHc--CCeEEEEECCHHHHHHHHhhCC-----CCCEEEcCcccCcCC---CCcEEEEEECch
Confidence 578999999999998888753 5799999999999999887532 356789999887643 36899999984
Q ss_pred ---cccHHHHHHHHccccccCeEEEEEE
Q 022962 201 ---VAEMRILAEYCLPLVRVGGLFVAAK 225 (289)
Q Consensus 201 ---~~~~~~ll~~~~~~LkpgG~l~~~~ 225 (289)
..++..++.++.++|+|||.+++..
T Consensus 113 l~~~~d~~~~l~~~~~~Lk~gG~l~~~~ 140 (251)
T PRK10258 113 VQWCGNLSTALRELYRVVRPGGVVAFTT 140 (251)
T ss_pred hhhcCCHHHHHHHHHHHcCCCeEEEEEe
Confidence 3578899999999999999999864
No 85
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=99.51 E-value=1.3e-12 Score=125.65 Aligned_cols=130 Identities=18% Similarity=0.168 Sum_probs=97.4
Q ss_pred CCCCCeEEEEcCCCChHHHHHHHHC-CCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCcCCCCceEEE
Q 022962 119 CNSNLKLVDVGTGAGLPGLVLAIAC-PDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAV 197 (289)
Q Consensus 119 ~~~~~~VLDiGcG~G~~~l~la~~~-p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~~~~~fD~V~ 197 (289)
..++.+|||+|||+|..++.++... +.++|+|+|+++.+++.+++|++.+|+++++++++|+.++... +.++||+|+
T Consensus 248 ~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~--~~~~fD~Vl 325 (444)
T PRK14902 248 PKGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLGLTNIETKALDARKVHEK--FAEKFDKIL 325 (444)
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCCcccccch--hcccCCEEE
Confidence 4567899999999999999999875 5789999999999999999999999998899999999876421 236899999
Q ss_pred EcCcc-------------------c-------HHHHHHHHccccccCeEEEEEEcCCcHHHHH-HHHHHHHHh-CCeEeE
Q 022962 198 ARAVA-------------------E-------MRILAEYCLPLVRVGGLFVAAKGHDPQEEVK-NSERAVQLM-GASLLQ 249 (289)
Q Consensus 198 sn~~~-------------------~-------~~~ll~~~~~~LkpgG~l~~~~g~~~~~ei~-~~~~~l~~~-g~~~~~ 249 (289)
+++.. + ...+++.+.++|||||.+++..-....+|-. .+...++.+ +|+++.
T Consensus 326 ~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvystcs~~~~Ene~vv~~~l~~~~~~~~~~ 405 (444)
T PRK14902 326 VDAPCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGILVYSTCTIEKEENEEVIEAFLEEHPEFELVP 405 (444)
T ss_pred EcCCCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEcCCCChhhhHHHHHHHHHhCCCcEEec
Confidence 87410 1 2468999999999999998654332222222 223344555 365544
Q ss_pred E
Q 022962 250 L 250 (289)
Q Consensus 250 ~ 250 (289)
+
T Consensus 406 ~ 406 (444)
T PRK14902 406 L 406 (444)
T ss_pred c
Confidence 3
No 86
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=99.50 E-value=4.4e-13 Score=122.77 Aligned_cols=101 Identities=14% Similarity=0.169 Sum_probs=84.3
Q ss_pred CCCCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCC-CEEEEeccccccCCCCcCCCCceEEE
Q 022962 119 CNSNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLL-NVQIVRGRAETLGKDVSFREQYDVAV 197 (289)
Q Consensus 119 ~~~~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~-ni~~~~~d~~~~~~~~~~~~~fD~V~ 197 (289)
+.++.+|||||||+|.+++.+++.+|+.+++++|. +.+++.++++++..++. +++++.+|+.+... ..+|+|+
T Consensus 147 ~~~~~~vlDiG~G~G~~~~~~~~~~p~~~~~~~D~-~~~~~~a~~~~~~~gl~~rv~~~~~d~~~~~~-----~~~D~v~ 220 (306)
T TIGR02716 147 LDGVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVNENAAEKGVADRMRGIAVDIYKESY-----PEADAVL 220 (306)
T ss_pred CCCCCEEEEeCCchhHHHHHHHHHCCCCEEEEEec-HHHHHHHHHHHHhCCccceEEEEecCccCCCC-----CCCCEEE
Confidence 44578999999999999999999999999999997 78999999999999875 59999999876432 2379887
Q ss_pred EcCc------ccHHHHHHHHccccccCeEEEEEE
Q 022962 198 ARAV------AEMRILAEYCLPLVRVGGLFVAAK 225 (289)
Q Consensus 198 sn~~------~~~~~ll~~~~~~LkpgG~l~~~~ 225 (289)
+..+ .....+++++++.|+|||++++..
T Consensus 221 ~~~~lh~~~~~~~~~il~~~~~~L~pgG~l~i~d 254 (306)
T TIGR02716 221 FCRILYSANEQLSTIMCKKAFDAMRSGGRLLILD 254 (306)
T ss_pred eEhhhhcCChHHHHHHHHHHHHhcCCCCEEEEEE
Confidence 5532 223579999999999999998763
No 87
>PRK04457 spermidine synthase; Provisional
Probab=99.50 E-value=5.4e-13 Score=119.63 Aligned_cols=119 Identities=13% Similarity=0.158 Sum_probs=91.0
Q ss_pred CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCC-CCEEEEeccccccCCCCcCCCCceEEEEcC
Q 022962 122 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQL-LNVQIVRGRAETLGKDVSFREQYDVAVARA 200 (289)
Q Consensus 122 ~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l-~ni~~~~~d~~~~~~~~~~~~~fD~V~sn~ 200 (289)
+.+|||||||+|.++..++...|+.+|++||+++++++.|+++....+. ++++++++|+.++-.. ..++||+|++++
T Consensus 67 ~~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~l~~--~~~~yD~I~~D~ 144 (262)
T PRK04457 67 PQHILQIGLGGGSLAKFIYTYLPDTRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAEYIAV--HRHSTDVILVDG 144 (262)
T ss_pred CCEEEEECCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHHHHh--CCCCCCEEEEeC
Confidence 5689999999999999999888999999999999999999998665443 5799999998775321 236899999875
Q ss_pred ccc--------HHHHHHHHccccccCeEEEEEEcCCcHHHHHHHHHHHHHh
Q 022962 201 VAE--------MRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLM 243 (289)
Q Consensus 201 ~~~--------~~~ll~~~~~~LkpgG~l~~~~g~~~~~ei~~~~~~l~~~ 243 (289)
... ...+++.+.+.|+|||.+++..... ........+.++..
T Consensus 145 ~~~~~~~~~l~t~efl~~~~~~L~pgGvlvin~~~~-~~~~~~~l~~l~~~ 194 (262)
T PRK04457 145 FDGEGIIDALCTQPFFDDCRNALSSDGIFVVNLWSR-DKRYDRYLERLESS 194 (262)
T ss_pred CCCCCCccccCcHHHHHHHHHhcCCCcEEEEEcCCC-chhHHHHHHHHHHh
Confidence 321 3799999999999999999743221 22233444455443
No 88
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=99.49 E-value=4e-13 Score=116.57 Aligned_cols=100 Identities=22% Similarity=0.269 Sum_probs=82.5
Q ss_pred CCCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCcCCCCceEEEEc
Q 022962 120 NSNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVAR 199 (289)
Q Consensus 120 ~~~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~~~~~fD~V~sn 199 (289)
.++.+|||+|||+|..+..++... .+|+++|+++.+++.++++++.+++.+++++++|..+.... .++||+|+++
T Consensus 77 ~~~~~VLeiG~GsG~~t~~la~~~--~~v~~vd~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~---~~~fD~I~~~ 151 (212)
T PRK00312 77 KPGDRVLEIGTGSGYQAAVLAHLV--RRVFSVERIKTLQWEAKRRLKQLGLHNVSVRHGDGWKGWPA---YAPFDRILVT 151 (212)
T ss_pred CCCCEEEEECCCccHHHHHHHHHh--CEEEEEeCCHHHHHHHHHHHHHCCCCceEEEECCcccCCCc---CCCcCEEEEc
Confidence 357899999999999998888764 48999999999999999999999998899999998653221 2689999998
Q ss_pred CcccHHHHHHHHccccccCeEEEEEEc
Q 022962 200 AVAEMRILAEYCLPLVRVGGLFVAAKG 226 (289)
Q Consensus 200 ~~~~~~~ll~~~~~~LkpgG~l~~~~g 226 (289)
+.. ..+.+.+.+.|+|||.+++..+
T Consensus 152 ~~~--~~~~~~l~~~L~~gG~lv~~~~ 176 (212)
T PRK00312 152 AAA--PEIPRALLEQLKEGGILVAPVG 176 (212)
T ss_pred cCc--hhhhHHHHHhcCCCcEEEEEEc
Confidence 532 3445667889999999998766
No 89
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=99.49 E-value=1.7e-13 Score=119.87 Aligned_cols=97 Identities=21% Similarity=0.288 Sum_probs=83.5
Q ss_pred CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCcCCCCceEEEEcC-
Q 022962 122 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARA- 200 (289)
Q Consensus 122 ~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~~~~~fD~V~sn~- 200 (289)
+.+|||+|||+|.++..++...+..+|+++|+++.++..+++... ++++++.+|+++.+.. +++||+|+++.
T Consensus 35 ~~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~----~~~~~~~~d~~~~~~~---~~~fD~vi~~~~ 107 (240)
T TIGR02072 35 PASVLDIGCGTGYLTRALLKRFPQAEFIALDISAGMLAQAKTKLS----ENVQFICGDAEKLPLE---DSSFDLIVSNLA 107 (240)
T ss_pred CCeEEEECCCccHHHHHHHHhCCCCcEEEEeChHHHHHHHHHhcC----CCCeEEecchhhCCCC---CCceeEEEEhhh
Confidence 568999999999999999998888899999999999988877543 3788999999987643 36899999985
Q ss_pred ---cccHHHHHHHHccccccCeEEEEEE
Q 022962 201 ---VAEMRILAEYCLPLVRVGGLFVAAK 225 (289)
Q Consensus 201 ---~~~~~~ll~~~~~~LkpgG~l~~~~ 225 (289)
..+...+++.+.++|+|||.+++..
T Consensus 108 l~~~~~~~~~l~~~~~~L~~~G~l~~~~ 135 (240)
T TIGR02072 108 LQWCDDLSQALSELARVLKPGGLLAFST 135 (240)
T ss_pred hhhccCHHHHHHHHHHHcCCCcEEEEEe
Confidence 3478899999999999999999754
No 90
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=99.48 E-value=9.3e-13 Score=121.19 Aligned_cols=138 Identities=12% Similarity=0.081 Sum_probs=101.8
Q ss_pred CCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCcCCCCceEEEEcC
Q 022962 121 SNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARA 200 (289)
Q Consensus 121 ~~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~~~~~fD~V~sn~ 200 (289)
++.+|||+|||+|.+++.+|.. +.+|+|+|+|+.+++.|++|++.++++|++++++|+.++... ..++||+|+++.
T Consensus 173 ~~~~VLDl~cG~G~~sl~la~~--~~~V~gvD~s~~av~~A~~n~~~~~l~~v~~~~~D~~~~~~~--~~~~~D~Vv~dP 248 (315)
T PRK03522 173 PPRSMWDLFCGVGGFGLHCATP--GMQLTGIEISAEAIACAKQSAAELGLTNVQFQALDSTQFATA--QGEVPDLVLVNP 248 (315)
T ss_pred CCCEEEEccCCCCHHHHHHHhc--CCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCHHHHHHh--cCCCCeEEEECC
Confidence 3679999999999999999974 579999999999999999999999998899999999886431 135799999995
Q ss_pred cc-c-HHHHHHHHccccccCeEEEEEEcCCc-HHHHHHHHHHHHHhCCeEeEEeeee-cCCCCCceEEEEEEe
Q 022962 201 VA-E-MRILAEYCLPLVRVGGLFVAAKGHDP-QEEVKNSERAVQLMGASLLQLCSVE-SQSPFGQRTAVVCLK 269 (289)
Q Consensus 201 ~~-~-~~~ll~~~~~~LkpgG~l~~~~g~~~-~~ei~~~~~~l~~~g~~~~~~~~~~-~~~~~~~r~lv~~~k 269 (289)
.. . ...+++.+. .++|++.+++..++.. ..++. .+ .|+++.++..++ +|....-..++++++
T Consensus 249 Pr~G~~~~~~~~l~-~~~~~~ivyvsc~p~t~~rd~~----~l--~~y~~~~~~~~DmFP~T~HvE~v~~l~r 314 (315)
T PRK03522 249 PRRGIGKELCDYLS-QMAPRFILYSSCNAQTMAKDLA----HL--PGYRIERVQLFDMFPHTAHYEVLTLLVR 314 (315)
T ss_pred CCCCccHHHHHHHH-HcCCCeEEEEECCcccchhHHh----hc--cCcEEEEEEEeccCCCCCeEEEEEEEEc
Confidence 32 1 123333333 3678888887665533 22322 23 589999999887 565555555666654
No 91
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=99.48 E-value=5.3e-13 Score=115.83 Aligned_cols=93 Identities=14% Similarity=0.230 Sum_probs=71.6
Q ss_pred CCCeEEEEcCCCChHHHHHHHHC-CCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCC-----CCcCCCCce
Q 022962 121 SNLKLVDVGTGAGLPGLVLAIAC-PDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGK-----DVSFREQYD 194 (289)
Q Consensus 121 ~~~~VLDiGcG~G~~~l~la~~~-p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~-----~~~~~~~fD 194 (289)
++.+|||||||+|.++..+++.. +..+|+|||+++ + ....+++++++|+.+... .....++||
T Consensus 51 ~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~-~----------~~~~~v~~i~~D~~~~~~~~~i~~~~~~~~~D 119 (209)
T PRK11188 51 PGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILP-M----------DPIVGVDFLQGDFRDELVLKALLERVGDSKVQ 119 (209)
T ss_pred CCCEEEEEcccCCHHHHHHHHHcCCCceEEEEeccc-c----------cCCCCcEEEecCCCChHHHHHHHHHhCCCCCC
Confidence 47799999999999999998875 457999999988 1 134579999999988530 001136899
Q ss_pred EEEEcCcc--------c-------HHHHHHHHccccccCeEEEEE
Q 022962 195 VAVARAVA--------E-------MRILAEYCLPLVRVGGLFVAA 224 (289)
Q Consensus 195 ~V~sn~~~--------~-------~~~ll~~~~~~LkpgG~l~~~ 224 (289)
+|+|+... + ...+++.+.++|+|||.|++.
T Consensus 120 ~V~S~~~~~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~ 164 (209)
T PRK11188 120 VVMSDMAPNMSGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVVK 164 (209)
T ss_pred EEecCCCCccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEE
Confidence 99997421 1 256889999999999999984
No 92
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=99.47 E-value=6e-13 Score=109.32 Aligned_cols=91 Identities=18% Similarity=0.173 Sum_probs=70.7
Q ss_pred CCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCcCCCCceEEEEcC
Q 022962 121 SNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARA 200 (289)
Q Consensus 121 ~~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~~~~~fD~V~sn~ 200 (289)
++.+|||||||+|.++..++.. +.+|+|+|+++.+++. .++.....+..+... .+++||+|+|+.
T Consensus 22 ~~~~vLDiGcG~G~~~~~l~~~--~~~~~g~D~~~~~~~~----------~~~~~~~~~~~~~~~---~~~~fD~i~~~~ 86 (161)
T PF13489_consen 22 PGKRVLDIGCGTGSFLRALAKR--GFEVTGVDISPQMIEK----------RNVVFDNFDAQDPPF---PDGSFDLIICND 86 (161)
T ss_dssp TTSEEEEESSTTSHHHHHHHHT--TSEEEEEESSHHHHHH----------TTSEEEEEECHTHHC---HSSSEEEEEEES
T ss_pred CCCEEEEEcCCCCHHHHHHHHh--CCEEEEEECCHHHHhh----------hhhhhhhhhhhhhhc---cccchhhHhhHH
Confidence 4789999999999999888755 4499999999999877 233333333333222 247899999985
Q ss_pred ----cccHHHHHHHHccccccCeEEEEEEc
Q 022962 201 ----VAEMRILAEYCLPLVRVGGLFVAAKG 226 (289)
Q Consensus 201 ----~~~~~~ll~~~~~~LkpgG~l~~~~g 226 (289)
+.++..+++.+.++|||||++++...
T Consensus 87 ~l~~~~d~~~~l~~l~~~LkpgG~l~~~~~ 116 (161)
T PF13489_consen 87 VLEHLPDPEEFLKELSRLLKPGGYLVISDP 116 (161)
T ss_dssp SGGGSSHHHHHHHHHHHCEEEEEEEEEEEE
T ss_pred HHhhcccHHHHHHHHHHhcCCCCEEEEEEc
Confidence 45789999999999999999998764
No 93
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=99.47 E-value=5.2e-13 Score=134.80 Aligned_cols=126 Identities=15% Similarity=0.178 Sum_probs=99.9
Q ss_pred CCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCC--CEEEEeccccccCCCCcCCCCceEEEE
Q 022962 121 SNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLL--NVQIVRGRAETLGKDVSFREQYDVAVA 198 (289)
Q Consensus 121 ~~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~--ni~~~~~d~~~~~~~~~~~~~fD~V~s 198 (289)
++.+|||+|||+|.+++.+|.. +..+|++||+|+.+++.|++|++.++++ +++++++|+.++... ..++||+|++
T Consensus 538 ~g~rVLDlf~gtG~~sl~aa~~-Ga~~V~~vD~s~~al~~a~~N~~~ng~~~~~v~~i~~D~~~~l~~--~~~~fDlIil 614 (702)
T PRK11783 538 KGKDFLNLFAYTGTASVHAALG-GAKSTTTVDMSNTYLEWAERNFALNGLSGRQHRLIQADCLAWLKE--AREQFDLIFI 614 (702)
T ss_pred CCCeEEEcCCCCCHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHhCCCccceEEEEccHHHHHHH--cCCCcCEEEE
Confidence 4789999999999999998864 4558999999999999999999999985 699999999775321 1368999999
Q ss_pred cCc---------------ccHHHHHHHHccccccCeEEEEEEcCCcHHHHHHHHHHHHHhCCeEeEEee
Q 022962 199 RAV---------------AEMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLLQLCS 252 (289)
Q Consensus 199 n~~---------------~~~~~ll~~~~~~LkpgG~l~~~~g~~~~~ei~~~~~~l~~~g~~~~~~~~ 252 (289)
++. .++..++..+.++|+|||.+++.......... .+.+...|+.+..+..
T Consensus 615 DPP~f~~~~~~~~~~~~~~~y~~l~~~a~~lL~~gG~l~~~~~~~~~~~~---~~~~~~~g~~~~~i~~ 680 (702)
T PRK11783 615 DPPTFSNSKRMEDSFDVQRDHVALIKDAKRLLRPGGTLYFSNNKRGFKMD---EEGLAKLGLKAEEITA 680 (702)
T ss_pred CCCCCCCCCccchhhhHHHHHHHHHHHHHHHcCCCCEEEEEeCCccCChh---HHHHHhCCCeEEEEec
Confidence 841 24678899999999999999987665433222 4456678888776653
No 94
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=99.47 E-value=8.8e-13 Score=118.31 Aligned_cols=189 Identities=15% Similarity=0.135 Sum_probs=130.9
Q ss_pred cCCCCCHHHHHHHHHHHHHHHHhhcC-cCceeec---ChHHHHHh-hhhhccccCCCCccccccccCCCCCCCCeEEEEc
Q 022962 55 HFETLNTRQQEQIHLYVDALLQWNRK-MNLTAVK---DVNEVMER-HIDDSLAIIPPIKNSYTSHCDSSCNSNLKLVDVG 129 (289)
Q Consensus 55 ~~~~~~~~~~~~l~~~~~~l~~~n~~-~~l~~~~---~~~~~~~~-~~~~sl~~~~~~~~~~~~~~~~~~~~~~~VLDiG 129 (289)
....+++++.+++..-...+.-|-++ +.+..+. ++...|+= .+...+. ++ .|.+|||||
T Consensus 60 ~~~~l~~~~~~~l~~~l~~l~PWRKGPf~l~gi~IDtEWrSd~KW~rl~p~l~---------------~L-~gk~VLDIG 123 (315)
T PF08003_consen 60 SASDLSAEQRQQLEQLLKALMPWRKGPFSLFGIHIDTEWRSDWKWDRLLPHLP---------------DL-KGKRVLDIG 123 (315)
T ss_pred CCCCCCHHHHHHHHHHHHhhCCcccCCcccCCEeecccccccchHHHHHhhhC---------------Cc-CCCEEEEec
Confidence 34567889999999999999988773 5554442 22222211 1111111 12 388999999
Q ss_pred CCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCC-EEEEeccccccCCCCcCCCCceEEEEcCc----ccH
Q 022962 130 TGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLN-VQIVRGRAETLGKDVSFREQYDVAVARAV----AEM 204 (289)
Q Consensus 130 cG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~n-i~~~~~d~~~~~~~~~~~~~fD~V~sn~~----~~~ 204 (289)
||+|+.+..++.. ....|+|+|.+...+...+...+-+|.++ +..+-..+++++. .+.||+|+|.++ .++
T Consensus 124 C~nGY~~frM~~~-GA~~ViGiDP~~lf~~QF~~i~~~lg~~~~~~~lplgvE~Lp~----~~~FDtVF~MGVLYHrr~P 198 (315)
T PF08003_consen 124 CNNGYYSFRMLGR-GAKSVIGIDPSPLFYLQFEAIKHFLGQDPPVFELPLGVEDLPN----LGAFDTVFSMGVLYHRRSP 198 (315)
T ss_pred CCCcHHHHHHhhc-CCCEEEEECCChHHHHHHHHHHHHhCCCccEEEcCcchhhccc----cCCcCEEEEeeehhccCCH
Confidence 9999999998876 45689999999987776666556666543 4444457777765 278999999975 477
Q ss_pred HHHHHHHccccccCeEEEEEE----cCC-----------------cHHHHHHHHHHHHHhCCeEeEEeeeecCCCCCceE
Q 022962 205 RILAEYCLPLVRVGGLFVAAK----GHD-----------------PQEEVKNSERAVQLMGASLLQLCSVESQSPFGQRT 263 (289)
Q Consensus 205 ~~ll~~~~~~LkpgG~l~~~~----g~~-----------------~~~ei~~~~~~l~~~g~~~~~~~~~~~~~~~~~r~ 263 (289)
-..+++++..|+|||.++++. |.. ..+.+..+...+++.||+.+++..+.....+.+|.
T Consensus 199 l~~L~~Lk~~L~~gGeLvLETlvi~g~~~~~L~P~~rYa~m~nv~FiPs~~~L~~wl~r~gF~~v~~v~~~~Tt~~EQR~ 278 (315)
T PF08003_consen 199 LDHLKQLKDSLRPGGELVLETLVIDGDENTVLVPEDRYAKMRNVWFIPSVAALKNWLERAGFKDVRCVDVSPTTIEEQRK 278 (315)
T ss_pred HHHHHHHHHhhCCCCEEEEEEeeecCCCceEEccCCcccCCCceEEeCCHHHHHHHHHHcCCceEEEecCccCCHHHhcc
Confidence 889999999999999999764 211 11234556777889999999888775444445554
Q ss_pred E
Q 022962 264 A 264 (289)
Q Consensus 264 l 264 (289)
.
T Consensus 279 T 279 (315)
T PF08003_consen 279 T 279 (315)
T ss_pred C
Confidence 3
No 95
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=99.47 E-value=9.3e-13 Score=115.12 Aligned_cols=125 Identities=20% Similarity=0.168 Sum_probs=103.9
Q ss_pred CCCCCeEEEEcCCCChHHHHHHHH-CCCCEEEEEeCChHHHHHHHHHHHHcCCCC-EEEEeccccccCCCCcCCCCceEE
Q 022962 119 CNSNLKLVDVGTGAGLPGLVLAIA-CPDWKVTLLESMNKRCVFLEHAVSLTQLLN-VQIVRGRAETLGKDVSFREQYDVA 196 (289)
Q Consensus 119 ~~~~~~VLDiGcG~G~~~l~la~~-~p~~~V~~iD~s~~~l~~a~~~~~~~~l~n-i~~~~~d~~~~~~~~~~~~~fD~V 196 (289)
+.++.+|+|.|+|||.++..||.. .|.++|+..|+.++.++.|++|.+..++.| |++..+|+.+.... +.||+|
T Consensus 92 i~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l~d~v~~~~~Dv~~~~~~----~~vDav 167 (256)
T COG2519 92 ISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGLGDRVTLKLGDVREGIDE----EDVDAV 167 (256)
T ss_pred CCCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhccccceEEEeccccccccc----cccCEE
Confidence 446999999999999999999975 477999999999999999999999999877 99999999887543 589999
Q ss_pred EEcCcccHHHHHHHHccccccCeEEEEEEcCCcHHHHHHHHHHHHHhCCeEeEE
Q 022962 197 VARAVAEMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLLQL 250 (289)
Q Consensus 197 ~sn~~~~~~~ll~~~~~~LkpgG~l~~~~g~~~~~ei~~~~~~l~~~g~~~~~~ 250 (289)
+..-.+ +.+.++.+...|||||.++++.+. .+.+.+..+.+++.||...+.
T Consensus 168 ~LDmp~-PW~~le~~~~~Lkpgg~~~~y~P~--veQv~kt~~~l~~~g~~~ie~ 218 (256)
T COG2519 168 FLDLPD-PWNVLEHVSDALKPGGVVVVYSPT--VEQVEKTVEALRERGFVDIEA 218 (256)
T ss_pred EEcCCC-hHHHHHHHHHHhCCCcEEEEEcCC--HHHHHHHHHHHHhcCccchhh
Confidence 987544 457899999999999999987653 445556666788888865543
No 96
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=99.47 E-value=2.1e-12 Score=112.58 Aligned_cols=129 Identities=18% Similarity=0.258 Sum_probs=100.4
Q ss_pred CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCcCCCCceEEEEcC-
Q 022962 122 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARA- 200 (289)
Q Consensus 122 ~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~~~~~fD~V~sn~- 200 (289)
+.+|||+|||+|.++..++.. ..+++++|+++.+++.+++++...+..++++.+.|+.+..... .++||+|+++.
T Consensus 46 ~~~vLdlG~G~G~~~~~l~~~--~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~--~~~~D~i~~~~~ 121 (224)
T TIGR01983 46 GLRVLDVGCGGGLLSEPLARL--GANVTGIDASEENIEVAKLHAKKDPLLKIEYRCTSVEDLAEKG--AKSFDVVTCMEV 121 (224)
T ss_pred CCeEEEECCCCCHHHHHHHhc--CCeEEEEeCCHHHHHHHHHHHHHcCCCceEEEeCCHHHhhcCC--CCCccEEEehhH
Confidence 679999999999999888865 4579999999999999999988877657999999988765421 36899999973
Q ss_pred ---cccHHHHHHHHccccccCeEEEEEEcCCcH-H--------------------------HHHHHHHHHHHhCCeEeEE
Q 022962 201 ---VAEMRILAEYCLPLVRVGGLFVAAKGHDPQ-E--------------------------EVKNSERAVQLMGASLLQL 250 (289)
Q Consensus 201 ---~~~~~~ll~~~~~~LkpgG~l~~~~g~~~~-~--------------------------ei~~~~~~l~~~g~~~~~~ 250 (289)
..+...+++.+.++|+|||.+++....... . ...++.+.+++.||+++++
T Consensus 122 l~~~~~~~~~l~~~~~~L~~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~G~~i~~~ 201 (224)
T TIGR01983 122 LEHVPDPQAFIRACAQLLKPGGILFFSTINRTPKSYLLAIVGAEYILRIVPKGTHDWEKFIKPSELTSWLESAGLRVKDV 201 (224)
T ss_pred HHhCCCHHHHHHHHHHhcCCCcEEEEEecCCCchHHHHHHHhhhhhhhcCCCCcCChhhcCCHHHHHHHHHHcCCeeeee
Confidence 567889999999999999998875421100 0 0123556777899999887
Q ss_pred eeee
Q 022962 251 CSVE 254 (289)
Q Consensus 251 ~~~~ 254 (289)
..+.
T Consensus 202 ~~~~ 205 (224)
T TIGR01983 202 KGLV 205 (224)
T ss_pred eeEE
Confidence 6543
No 97
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=99.47 E-value=2.1e-12 Score=123.75 Aligned_cols=131 Identities=18% Similarity=0.153 Sum_probs=98.5
Q ss_pred CCCCCCeEEEEcCCCChHHHHHHHHC-CCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCC-cCCCCceE
Q 022962 118 SCNSNLKLVDVGTGAGLPGLVLAIAC-PDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDV-SFREQYDV 195 (289)
Q Consensus 118 ~~~~~~~VLDiGcG~G~~~l~la~~~-p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~-~~~~~fD~ 195 (289)
...++.+|||+|||+|..++.++... +.++|+|+|+++.+++.+++|++.+|++||+++++|+.++.... ...++||.
T Consensus 249 ~~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~~~fD~ 328 (434)
T PRK14901 249 DPQPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLGLKSIKILAADSRNLLELKPQWRGYFDR 328 (434)
T ss_pred CCCCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCeEEEEeCChhhcccccccccccCCE
Confidence 34568899999999999999999875 45799999999999999999999999989999999998765211 11368999
Q ss_pred EEEcCcc-------------------c-------HHHHHHHHccccccCeEEEEEEcC-CcHHHHHHHHHHHHHh-CCeE
Q 022962 196 AVARAVA-------------------E-------MRILAEYCLPLVRVGGLFVAAKGH-DPQEEVKNSERAVQLM-GASL 247 (289)
Q Consensus 196 V~sn~~~-------------------~-------~~~ll~~~~~~LkpgG~l~~~~g~-~~~~ei~~~~~~l~~~-g~~~ 247 (289)
|++++.. + ...+++.+.++|||||+++...-. ...+....+...++++ +|.+
T Consensus 329 Vl~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lvystcsi~~~Ene~~v~~~l~~~~~~~~ 408 (434)
T PRK14901 329 ILLDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPGGTLVYATCTLHPAENEAQIEQFLARHPDWKL 408 (434)
T ss_pred EEEeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCChhhHHHHHHHHHHhCCCcEe
Confidence 9986310 0 368899999999999999865432 2223333344455565 5654
Q ss_pred e
Q 022962 248 L 248 (289)
Q Consensus 248 ~ 248 (289)
.
T Consensus 409 ~ 409 (434)
T PRK14901 409 E 409 (434)
T ss_pred c
Confidence 3
No 98
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=99.47 E-value=3.6e-12 Score=121.93 Aligned_cols=107 Identities=15% Similarity=0.143 Sum_probs=87.3
Q ss_pred CCCCCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCcCCCCceEEE
Q 022962 118 SCNSNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAV 197 (289)
Q Consensus 118 ~~~~~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~~~~~fD~V~ 197 (289)
...++.+|||+|||+|..++.++...++.+|+|+|+|+.+++.++++++.+|+. ++++++|+.++... ...++||.|+
T Consensus 241 ~~~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~~~l~~~~~n~~~~g~~-~~~~~~D~~~~~~~-~~~~~fD~Vl 318 (427)
T PRK10901 241 APQNGERVLDACAAPGGKTAHILELAPQAQVVALDIDAQRLERVRENLQRLGLK-ATVIVGDARDPAQW-WDGQPFDRIL 318 (427)
T ss_pred CCCCCCEEEEeCCCCChHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcCCC-eEEEEcCcccchhh-cccCCCCEEE
Confidence 345688999999999999999998876689999999999999999999999984 78999999875321 0136799999
Q ss_pred EcCcc--------------------------cHHHHHHHHccccccCeEEEEEEc
Q 022962 198 ARAVA--------------------------EMRILAEYCLPLVRVGGLFVAAKG 226 (289)
Q Consensus 198 sn~~~--------------------------~~~~ll~~~~~~LkpgG~l~~~~g 226 (289)
+++.. ....+++.+.++|||||++++...
T Consensus 319 ~D~Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvystc 373 (427)
T PRK10901 319 LDAPCSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGTLLYATC 373 (427)
T ss_pred ECCCCCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeC
Confidence 77411 124789999999999999997653
No 99
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=99.47 E-value=1.2e-12 Score=117.56 Aligned_cols=105 Identities=15% Similarity=0.184 Sum_probs=87.1
Q ss_pred CCCeEEEEcCCCChHHHHHHHHCC-CCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCcCCCCceEEEEc
Q 022962 121 SNLKLVDVGTGAGLPGLVLAIACP-DWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVAR 199 (289)
Q Consensus 121 ~~~~VLDiGcG~G~~~l~la~~~p-~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~~~~~fD~V~sn 199 (289)
++.+|||+|||+|..++.+|.... .+.|+++|+++.+++.++++++.+++.+|++++.|+..+... .++||.|+++
T Consensus 71 ~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~---~~~fD~Vl~D 147 (264)
T TIGR00446 71 PPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCGVLNVAVTNFDGRVFGAA---VPKFDAILLD 147 (264)
T ss_pred CcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCcEEEecCCHHHhhhh---ccCCCEEEEc
Confidence 578999999999999999987754 479999999999999999999999998899999998876432 2569999987
Q ss_pred Cc--------------------------ccHHHHHHHHccccccCeEEEEEEcCC
Q 022962 200 AV--------------------------AEMRILAEYCLPLVRVGGLFVAAKGHD 228 (289)
Q Consensus 200 ~~--------------------------~~~~~ll~~~~~~LkpgG~l~~~~g~~ 228 (289)
+. .....+++.+.++|||||+++...-..
T Consensus 148 ~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvYstcs~ 202 (264)
T TIGR00446 148 APCSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLVYSTCSL 202 (264)
T ss_pred CCCCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCC
Confidence 31 012469999999999999998765443
No 100
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=99.47 E-value=1.1e-12 Score=125.52 Aligned_cols=130 Identities=16% Similarity=0.195 Sum_probs=99.3
Q ss_pred CCCCCCeEEEEcCCCChHHHHHHHHC-CCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCcCCCCceEE
Q 022962 118 SCNSNLKLVDVGTGAGLPGLVLAIAC-PDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVA 196 (289)
Q Consensus 118 ~~~~~~~VLDiGcG~G~~~l~la~~~-p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~~~~~fD~V 196 (289)
...++.+|||+|||+|..++.+|... +.++|+|+|+|+.+++.+++++++.|+++++++++|+.+++.. ..++||.|
T Consensus 234 ~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g~~~v~~~~~Da~~l~~~--~~~~fD~V 311 (431)
T PRK14903 234 ELEPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLKLSSIEIKIADAERLTEY--VQDTFDRI 311 (431)
T ss_pred CCCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhhhhhh--hhccCCEE
Confidence 44568899999999999999998775 4689999999999999999999999998899999999876421 23679999
Q ss_pred EEcCcc--------------------------cHHHHHHHHccccccCeEEEEEEcCCcHHHHHHHH-HHHHHh-CCeEe
Q 022962 197 VARAVA--------------------------EMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSE-RAVQLM-GASLL 248 (289)
Q Consensus 197 ~sn~~~--------------------------~~~~ll~~~~~~LkpgG~l~~~~g~~~~~ei~~~~-~~l~~~-g~~~~ 248 (289)
++++.. ....++..+.++|||||.+++..-....+|-+... ..++.+ ++.+.
T Consensus 312 l~DaPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~~~eEne~vv~~fl~~~~~~~~~ 391 (431)
T PRK14903 312 LVDAPCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYSTCTVTKEENTEVVKRFVYEQKDAEVI 391 (431)
T ss_pred EECCCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCChhhCHHHHHHHHHhCCCcEEe
Confidence 987311 12677999999999999998876554444433333 344443 55544
Q ss_pred E
Q 022962 249 Q 249 (289)
Q Consensus 249 ~ 249 (289)
+
T Consensus 392 ~ 392 (431)
T PRK14903 392 D 392 (431)
T ss_pred c
Confidence 3
No 101
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=99.46 E-value=1.5e-12 Score=113.45 Aligned_cols=124 Identities=19% Similarity=0.194 Sum_probs=92.7
Q ss_pred CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCC-CCEEEEeccccccCCCCcCCCCceEEEEcC
Q 022962 122 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQL-LNVQIVRGRAETLGKDVSFREQYDVAVARA 200 (289)
Q Consensus 122 ~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l-~ni~~~~~d~~~~~~~~~~~~~fD~V~sn~ 200 (289)
+.+|||+|||+|.++..++.. +.+|+|+|+|+++++.|+++....+. .++.+.++|+.+.. ++||+|++..
T Consensus 56 ~~~vLDiGcG~G~~~~~la~~--~~~v~gvD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~------~~fD~ii~~~ 127 (219)
T TIGR02021 56 GKRVLDAGCGTGLLSIELAKR--GAIVKAVDISEQMVQMARNRAQGRDVAGNVEFEVNDLLSLC------GEFDIVVCMD 127 (219)
T ss_pred CCEEEEEeCCCCHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChhhCC------CCcCEEEEhh
Confidence 679999999999999998864 56999999999999999999887776 47999999998753 5799999863
Q ss_pred c------ccHHHHHHHHccccccCeEEEEEEcCCcH---------------------HHHHHHHHHHHHhCCeEeEEeee
Q 022962 201 V------AEMRILAEYCLPLVRVGGLFVAAKGHDPQ---------------------EEVKNSERAVQLMGASLLQLCSV 253 (289)
Q Consensus 201 ~------~~~~~ll~~~~~~LkpgG~l~~~~g~~~~---------------------~ei~~~~~~l~~~g~~~~~~~~~ 253 (289)
+ .+...+++.+.+++++++.+.+....... ....++.+.++.+||.++....+
T Consensus 128 ~l~~~~~~~~~~~l~~i~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~v~~~~~~ 207 (219)
T TIGR02021 128 VLIHYPASDMAKALGHLASLTKERVIFTFAPKTAWLAFLKMIGELFPGSSRATSAYLHPMTDLERALGELGWKIVREGLV 207 (219)
T ss_pred HHHhCCHHHHHHHHHHHHHHhCCCEEEEECCCchHHHHHHHHHhhCcCcccccceEEecHHHHHHHHHHcCceeeeeecc
Confidence 2 34567888888888877766642111000 01234555677888888776533
No 102
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=99.46 E-value=1.1e-12 Score=123.80 Aligned_cols=126 Identities=14% Similarity=0.124 Sum_probs=94.0
Q ss_pred CCCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCC--CEEEEeccccccCCCC-cCCCCceEE
Q 022962 120 NSNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLL--NVQIVRGRAETLGKDV-SFREQYDVA 196 (289)
Q Consensus 120 ~~~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~--ni~~~~~d~~~~~~~~-~~~~~fD~V 196 (289)
.++.+|||+|||+|.+++..+. .+..+|++||+|+.+++.|++|++.++++ +++++++|+.++.... ...++||+|
T Consensus 219 ~~g~rVLDlfsgtG~~~l~aa~-~ga~~V~~VD~s~~al~~a~~N~~~Ngl~~~~v~~i~~D~~~~l~~~~~~~~~fDlV 297 (396)
T PRK15128 219 VENKRVLNCFSYTGGFAVSALM-GGCSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVI 297 (396)
T ss_pred cCCCeEEEeccCCCHHHHHHHh-CCCCEEEEEECCHHHHHHHHHHHHHcCCCCCcEEEEEccHHHHHHHHHhcCCCCCEE
Confidence 3578999999999999887664 34569999999999999999999999985 7999999998753210 013579999
Q ss_pred EEcCc-------------ccHHHHHHHHccccccCeEEEEEEc--CCcHHHHHHHH-HHHHHhCCe
Q 022962 197 VARAV-------------AEMRILAEYCLPLVRVGGLFVAAKG--HDPQEEVKNSE-RAVQLMGAS 246 (289)
Q Consensus 197 ~sn~~-------------~~~~~ll~~~~~~LkpgG~l~~~~g--~~~~~ei~~~~-~~l~~~g~~ 246 (289)
++++. ..+..+++.+.++|+|||.++.... ....+++.++. ++..+.|-.
T Consensus 298 ilDPP~f~~~k~~l~~~~~~y~~l~~~a~~lLk~gG~lv~~scs~~~~~~~f~~~v~~aa~~~~~~ 363 (396)
T PRK15128 298 VMDPPKFVENKSQLMGACRGYKDINMLAIQLLNPGGILLTFSCSGLMTSDLFQKIIADAAIDAGRD 363 (396)
T ss_pred EECCCCCCCChHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEeCCCcCCHHHHHHHHHHHHHHcCCe
Confidence 99942 2467788889999999999997543 33445554433 334445543
No 103
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=99.46 E-value=3.1e-12 Score=113.18 Aligned_cols=132 Identities=17% Similarity=0.148 Sum_probs=100.4
Q ss_pred CCCCCCeEEEEcCCCChHHHHHHHH-CCCCEEEEEeCChHHHHHHHHHHHHcCCC-CEEEEeccccccCCCCcCCCCceE
Q 022962 118 SCNSNLKLVDVGTGAGLPGLVLAIA-CPDWKVTLLESMNKRCVFLEHAVSLTQLL-NVQIVRGRAETLGKDVSFREQYDV 195 (289)
Q Consensus 118 ~~~~~~~VLDiGcG~G~~~l~la~~-~p~~~V~~iD~s~~~l~~a~~~~~~~~l~-ni~~~~~d~~~~~~~~~~~~~fD~ 195 (289)
++.+|.+||+.|+|||.++..||+. .|.++|+..|..++.++.|++|.+..|+. ||++.+.|+.+-......+..||.
T Consensus 37 ~i~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~gl~~~v~~~~~Dv~~~g~~~~~~~~~Da 116 (247)
T PF08704_consen 37 DIRPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHGLDDNVTVHHRDVCEEGFDEELESDFDA 116 (247)
T ss_dssp T--TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTTCCTTEEEEES-GGCG--STT-TTSEEE
T ss_pred CCCCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcCCCCCceeEecceecccccccccCcccE
Confidence 3456999999999999999999975 58899999999999999999999999996 799999999653322122467999
Q ss_pred EEEcCcccHHHHHHHHcccc-ccCeEEEEEEcCCcHHHHHHHHHHHHHhCCeEeEEee
Q 022962 196 AVARAVAEMRILAEYCLPLV-RVGGLFVAAKGHDPQEEVKNSERAVQLMGASLLQLCS 252 (289)
Q Consensus 196 V~sn~~~~~~~ll~~~~~~L-kpgG~l~~~~g~~~~~ei~~~~~~l~~~g~~~~~~~~ 252 (289)
|+..-.+++ ..+..+.+.| ++||+++++.+ -.+.+....+.|++.||..+++..
T Consensus 117 vfLDlp~Pw-~~i~~~~~~L~~~gG~i~~fsP--~ieQv~~~~~~L~~~gf~~i~~~E 171 (247)
T PF08704_consen 117 VFLDLPDPW-EAIPHAKRALKKPGGRICCFSP--CIEQVQKTVEALREHGFTDIETVE 171 (247)
T ss_dssp EEEESSSGG-GGHHHHHHHE-EEEEEEEEEES--SHHHHHHHHHHHHHTTEEEEEEEE
T ss_pred EEEeCCCHH-HHHHHHHHHHhcCCceEEEECC--CHHHHHHHHHHHHHCCCeeeEEEE
Confidence 998754444 5677778899 89999998764 355666777888999997766543
No 104
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=99.46 E-value=1.2e-12 Score=111.59 Aligned_cols=117 Identities=15% Similarity=0.146 Sum_probs=81.0
Q ss_pred CCCeEEEEcCCCChHHHHHHHHC-CCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCC-----CCcCCCCce
Q 022962 121 SNLKLVDVGTGAGLPGLVLAIAC-PDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGK-----DVSFREQYD 194 (289)
Q Consensus 121 ~~~~VLDiGcG~G~~~l~la~~~-p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~-----~~~~~~~fD 194 (289)
++.+|||+|||+|.++..++... +..+|+|+|+|+.+ ...+++++++|+.+... .....++||
T Consensus 32 ~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~-----------~~~~i~~~~~d~~~~~~~~~l~~~~~~~~~D 100 (188)
T TIGR00438 32 PGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK-----------PIENVDFIRGDFTDEEVLNKIRERVGDDKVD 100 (188)
T ss_pred CCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc-----------cCCCceEEEeeCCChhHHHHHHHHhCCCCcc
Confidence 58899999999999999888775 56799999999854 23468888888876421 001135799
Q ss_pred EEEEcCcc---------------cHHHHHHHHccccccCeEEEEEEcCCcHHHHHHHHHHHHHhCCeEeEEe
Q 022962 195 VAVARAVA---------------EMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLLQLC 251 (289)
Q Consensus 195 ~V~sn~~~---------------~~~~ll~~~~~~LkpgG~l~~~~g~~~~~ei~~~~~~l~~~g~~~~~~~ 251 (289)
+|++++.. ..+.+++.+.++|+|||++++... +.+++.++...++. .+...++.
T Consensus 101 ~V~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi~~~--~~~~~~~~l~~l~~-~~~~~~~~ 169 (188)
T TIGR00438 101 VVMSDAAPNISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVVKVF--QGEEIDEYLNELRK-LFEKVKVT 169 (188)
T ss_pred EEEcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEEEEc--cCccHHHHHHHHHh-hhceEEEe
Confidence 99997421 136889999999999999998642 22333344444444 35444443
No 105
>PRK00811 spermidine synthase; Provisional
Probab=99.45 E-value=3e-12 Score=116.09 Aligned_cols=145 Identities=17% Similarity=0.196 Sum_probs=104.3
Q ss_pred CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcC-----CCCEEEEeccccccCCCCcCCCCceEE
Q 022962 122 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQ-----LLNVQIVRGRAETLGKDVSFREQYDVA 196 (289)
Q Consensus 122 ~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~-----l~ni~~~~~d~~~~~~~~~~~~~fD~V 196 (289)
+.+|||||||+|..+..+++..+..+|++||+++.+++.|++.....+ -.+++++.+|+..+-.. ..++||+|
T Consensus 77 p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~--~~~~yDvI 154 (283)
T PRK00811 77 PKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAE--TENSFDVI 154 (283)
T ss_pred CCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhh--CCCcccEE
Confidence 679999999999998888765455799999999999999999876532 24699999999875432 24689999
Q ss_pred EEcCccc--------HHHHHHHHccccccCeEEEEEEcC--CcHHHHHHHHHHHHHhCCeEeEEeeeecCCC-CCceEEE
Q 022962 197 VARAVAE--------MRILAEYCLPLVRVGGLFVAAKGH--DPQEEVKNSERAVQLMGASLLQLCSVESQSP-FGQRTAV 265 (289)
Q Consensus 197 ~sn~~~~--------~~~ll~~~~~~LkpgG~l~~~~g~--~~~~ei~~~~~~l~~~g~~~~~~~~~~~~~~-~~~r~lv 265 (289)
++....+ ...+++.+.+.|+|||.+++..+. ...+.+..+.+.+++. |..+......-|.- .+.+..+
T Consensus 155 i~D~~dp~~~~~~l~t~ef~~~~~~~L~~gGvlv~~~~~~~~~~~~~~~i~~tl~~~-F~~v~~~~~~vp~~~~~~w~f~ 233 (283)
T PRK00811 155 IVDSTDPVGPAEGLFTKEFYENCKRALKEDGIFVAQSGSPFYQADEIKDMHRKLKEV-FPIVRPYQAAIPTYPSGLWSFT 233 (283)
T ss_pred EECCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEEeCCCcccCHHHHHHHHHHHHHH-CCCEEEEEeECCcccCchheeE
Confidence 9974321 267889999999999999876542 2345566677777776 44344433333433 3456666
Q ss_pred EEEe
Q 022962 266 VCLK 269 (289)
Q Consensus 266 ~~~k 269 (289)
++.+
T Consensus 234 ~as~ 237 (283)
T PRK00811 234 FASK 237 (283)
T ss_pred Eeec
Confidence 6665
No 106
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=99.45 E-value=6.2e-13 Score=119.85 Aligned_cols=94 Identities=19% Similarity=0.223 Sum_probs=76.8
Q ss_pred CCeEEEEcCCCChHHHHHHHHCCC---CEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCcCCCCceEEEE
Q 022962 122 NLKLVDVGTGAGLPGLVLAIACPD---WKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVA 198 (289)
Q Consensus 122 ~~~VLDiGcG~G~~~l~la~~~p~---~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~~~~~fD~V~s 198 (289)
..+|||+|||+|.++..++...+. .+|+|+|+|+.+++.|+++ ..++.+..+|+.+++.. +++||+|++
T Consensus 86 ~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~-----~~~~~~~~~d~~~lp~~---~~sfD~I~~ 157 (272)
T PRK11088 86 ATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKR-----YPQVTFCVASSHRLPFA---DQSLDAIIR 157 (272)
T ss_pred CCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHh-----CCCCeEEEeecccCCCc---CCceeEEEE
Confidence 568999999999999999877653 4899999999999998764 24788999999887653 378999998
Q ss_pred cCcccHHHHHHHHccccccCeEEEEEEc
Q 022962 199 RAVAEMRILAEYCLPLVRVGGLFVAAKG 226 (289)
Q Consensus 199 n~~~~~~~ll~~~~~~LkpgG~l~~~~g 226 (289)
... +..++++.++|||||+|++...
T Consensus 158 ~~~---~~~~~e~~rvLkpgG~li~~~p 182 (272)
T PRK11088 158 IYA---PCKAEELARVVKPGGIVITVTP 182 (272)
T ss_pred ecC---CCCHHHHHhhccCCCEEEEEeC
Confidence 643 2356788999999999998753
No 107
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=99.45 E-value=4.4e-13 Score=118.25 Aligned_cols=103 Identities=18% Similarity=0.231 Sum_probs=86.8
Q ss_pred CCCeEEEEcCCCChHHHHHHHHCC-CCEEEEEeCChHHHHHHHHHHHHcCCC-CEEEEeccccccCCC---CcCCCCceE
Q 022962 121 SNLKLVDVGTGAGLPGLVLAIACP-DWKVTLLESMNKRCVFLEHAVSLTQLL-NVQIVRGRAETLGKD---VSFREQYDV 195 (289)
Q Consensus 121 ~~~~VLDiGcG~G~~~l~la~~~p-~~~V~~iD~s~~~l~~a~~~~~~~~l~-ni~~~~~d~~~~~~~---~~~~~~fD~ 195 (289)
++.+|||+|||+|+.++.+|...+ +++|+++|+++++++.|++|++.+|+. +|+++++|+.+.-.. ....++||+
T Consensus 68 ~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gda~~~L~~l~~~~~~~~fD~ 147 (234)
T PLN02781 68 NAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDALSALDQLLNNDPKPEFDF 147 (234)
T ss_pred CCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHhCCCCCCCCE
Confidence 367999999999999999987754 689999999999999999999999986 599999999874211 001358999
Q ss_pred EEEcCc-ccHHHHHHHHccccccCeEEEE
Q 022962 196 AVARAV-AEMRILAEYCLPLVRVGGLFVA 223 (289)
Q Consensus 196 V~sn~~-~~~~~ll~~~~~~LkpgG~l~~ 223 (289)
|+..+. ..+..+++.+.++|+|||.+++
T Consensus 148 VfiDa~k~~y~~~~~~~~~ll~~GG~ii~ 176 (234)
T PLN02781 148 AFVDADKPNYVHFHEQLLKLVKVGGIIAF 176 (234)
T ss_pred EEECCCHHHHHHHHHHHHHhcCCCeEEEE
Confidence 999964 4678999999999999999885
No 108
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=99.45 E-value=5.1e-13 Score=115.67 Aligned_cols=103 Identities=23% Similarity=0.317 Sum_probs=79.6
Q ss_pred CCCCCeEEEEcCCCChHHHHHHHHC-CCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCcCCCCceEEE
Q 022962 119 CNSNLKLVDVGTGAGLPGLVLAIAC-PDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAV 197 (289)
Q Consensus 119 ~~~~~~VLDiGcG~G~~~l~la~~~-p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~~~~~fD~V~ 197 (289)
++++.+|||||||||+.+-.+|... +..+|++||+++..++.|+++.+.++..||+++++|....... ..+||.|+
T Consensus 70 l~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~~nv~~~~gdg~~g~~~---~apfD~I~ 146 (209)
T PF01135_consen 70 LKPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGIDNVEVVVGDGSEGWPE---EAPFDRII 146 (209)
T ss_dssp C-TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTTHSEEEEES-GGGTTGG---G-SEEEEE
T ss_pred cCCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhccCceeEEEcchhhcccc---CCCcCEEE
Confidence 4569999999999999999999875 4568999999999999999999999999999999998764322 36899999
Q ss_pred EcC-cccHHHHHHHHccccccCeEEEEEEcC
Q 022962 198 ARA-VAEMRILAEYCLPLVRVGGLFVAAKGH 227 (289)
Q Consensus 198 sn~-~~~~~~ll~~~~~~LkpgG~l~~~~g~ 227 (289)
+++ ...++ ....+.|++||++++..+.
T Consensus 147 v~~a~~~ip---~~l~~qL~~gGrLV~pi~~ 174 (209)
T PF01135_consen 147 VTAAVPEIP---EALLEQLKPGGRLVAPIGQ 174 (209)
T ss_dssp ESSBBSS-----HHHHHTEEEEEEEEEEESS
T ss_pred EeeccchHH---HHHHHhcCCCcEEEEEEcc
Confidence 985 33333 2234569999999987764
No 109
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.44 E-value=7.5e-13 Score=113.24 Aligned_cols=104 Identities=21% Similarity=0.315 Sum_probs=85.9
Q ss_pred CCCCCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCcCCCCceEEE
Q 022962 118 SCNSNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAV 197 (289)
Q Consensus 118 ~~~~~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~~~~~fD~V~ 197 (289)
.++++.+||+||||||+.+-.||+.. .+|+.||..++..+.|++|.+.+|+.||.++++|-..--.. ..+||.|+
T Consensus 69 ~~~~g~~VLEIGtGsGY~aAvla~l~--~~V~siEr~~~L~~~A~~~L~~lg~~nV~v~~gDG~~G~~~---~aPyD~I~ 143 (209)
T COG2518 69 ELKPGDRVLEIGTGSGYQAAVLARLV--GRVVSIERIEELAEQARRNLETLGYENVTVRHGDGSKGWPE---EAPYDRII 143 (209)
T ss_pred CCCCCCeEEEECCCchHHHHHHHHHh--CeEEEEEEcHHHHHHHHHHHHHcCCCceEEEECCcccCCCC---CCCcCEEE
Confidence 45678999999999999999999874 49999999999999999999999999999999998764222 36899999
Q ss_pred EcC-ccc-HHHHHHHHccccccCeEEEEEEcCCcH
Q 022962 198 ARA-VAE-MRILAEYCLPLVRVGGLFVAAKGHDPQ 230 (289)
Q Consensus 198 sn~-~~~-~~~ll~~~~~~LkpgG~l~~~~g~~~~ 230 (289)
..+ ... ++.+++ .|++||++++..|....
T Consensus 144 Vtaaa~~vP~~Ll~----QL~~gGrlv~PvG~~~~ 174 (209)
T COG2518 144 VTAAAPEVPEALLD----QLKPGGRLVIPVGSGPA 174 (209)
T ss_pred EeeccCCCCHHHHH----hcccCCEEEEEEccCCc
Confidence 885 333 355554 69999999998884433
No 110
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.44 E-value=1.2e-12 Score=120.34 Aligned_cols=101 Identities=19% Similarity=0.252 Sum_probs=82.0
Q ss_pred CCCeEEEEcCCCChHHHHHHHHCCC-CEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCcCCCCceEEEEc
Q 022962 121 SNLKLVDVGTGAGLPGLVLAIACPD-WKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVAR 199 (289)
Q Consensus 121 ~~~~VLDiGcG~G~~~l~la~~~p~-~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~~~~~fD~V~sn 199 (289)
++.+|||||||+|.++..+++..+. .+|+++|+++++++.|+++++.++.+|+.++++|+.+.... ..+||+|++.
T Consensus 80 ~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~~nV~~i~gD~~~~~~~---~~~fD~Ii~~ 156 (322)
T PRK13943 80 KGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGIENVIFVCGDGYYGVPE---FAPYDVIFVT 156 (322)
T ss_pred CCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCChhhcccc---cCCccEEEEC
Confidence 4789999999999999999987653 58999999999999999999999998999999998765432 2579999987
Q ss_pred CcccHHHHHHHHccccccCeEEEEEEc
Q 022962 200 AVAEMRILAEYCLPLVRVGGLFVAAKG 226 (289)
Q Consensus 200 ~~~~~~~ll~~~~~~LkpgG~l~~~~g 226 (289)
... ..+...+.+.|+|||.+++..+
T Consensus 157 ~g~--~~ip~~~~~~LkpgG~Lvv~~~ 181 (322)
T PRK13943 157 VGV--DEVPETWFTQLKEGGRVIVPIN 181 (322)
T ss_pred Cch--HHhHHHHHHhcCCCCEEEEEeC
Confidence 422 2233445678999999988654
No 111
>KOG1271 consensus Methyltransferases [General function prediction only]
Probab=99.44 E-value=4.1e-12 Score=105.48 Aligned_cols=124 Identities=17% Similarity=0.223 Sum_probs=96.0
Q ss_pred CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCC-EEEEeccccccCCCCcCCCCceEEEEcC
Q 022962 122 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLN-VQIVRGRAETLGKDVSFREQYDVAVARA 200 (289)
Q Consensus 122 ~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~n-i~~~~~d~~~~~~~~~~~~~fD~V~sn~ 200 (289)
..+|||+|||.|.+...|+..--..+.+|||.|+++++.|+..+++.+.+| |+|.+.|+.+... +.++||+|+--+
T Consensus 68 A~~VlDLGtGNG~~L~~L~~egf~~~L~GvDYs~~AV~LA~niAe~~~~~n~I~f~q~DI~~~~~---~~~qfdlvlDKG 144 (227)
T KOG1271|consen 68 ADRVLDLGTGNGHLLFQLAKEGFQSKLTGVDYSEKAVELAQNIAERDGFSNEIRFQQLDITDPDF---LSGQFDLVLDKG 144 (227)
T ss_pred ccceeeccCCchHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHhcCCCcceeEEEeeccCCcc---cccceeEEeecC
Confidence 349999999999999999977444579999999999999999999999988 9999999987532 247788887541
Q ss_pred ------------cccHHHHHHHHccccccCeEEEEEEcCCcHHHHHHHHHHHHHhCCeEeEEe
Q 022962 201 ------------VAEMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLLQLC 251 (289)
Q Consensus 201 ------------~~~~~~ll~~~~~~LkpgG~l~~~~g~~~~~ei~~~~~~l~~~g~~~~~~~ 251 (289)
...+...+..+.++|+|||+|++..-.-..+|+.+ .+...||....-.
T Consensus 145 T~DAisLs~d~~~~r~~~Y~d~v~~ll~~~gifvItSCN~T~dELv~---~f~~~~f~~~~tv 204 (227)
T KOG1271|consen 145 TLDAISLSPDGPVGRLVVYLDSVEKLLSPGGIFVITSCNFTKDELVE---EFENFNFEYLSTV 204 (227)
T ss_pred ceeeeecCCCCcccceeeehhhHhhccCCCcEEEEEecCccHHHHHH---HHhcCCeEEEEee
Confidence 22345667788899999999999876655666544 4446777655443
No 112
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=99.43 E-value=8.3e-13 Score=124.46 Aligned_cols=96 Identities=19% Similarity=0.207 Sum_probs=80.7
Q ss_pred CCCCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCcCCCCceEEEE
Q 022962 119 CNSNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVA 198 (289)
Q Consensus 119 ~~~~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~~~~~fD~V~s 198 (289)
++++.+|||||||+|.+++.+|..+ +++|+|+|+|+++++.|+++++ ++ ++++...|..++ +++||.|++
T Consensus 165 l~~g~rVLDIGcG~G~~a~~la~~~-g~~V~giDlS~~~l~~A~~~~~--~l-~v~~~~~D~~~l------~~~fD~Ivs 234 (383)
T PRK11705 165 LKPGMRVLDIGCGWGGLARYAAEHY-GVSVVGVTISAEQQKLAQERCA--GL-PVEIRLQDYRDL------NGQFDRIVS 234 (383)
T ss_pred CCCCCEEEEeCCCccHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHhc--cC-eEEEEECchhhc------CCCCCEEEE
Confidence 4568899999999999999998765 6799999999999999999875 33 488888887665 267999998
Q ss_pred cCc------ccHHHHHHHHccccccCeEEEEE
Q 022962 199 RAV------AEMRILAEYCLPLVRVGGLFVAA 224 (289)
Q Consensus 199 n~~------~~~~~ll~~~~~~LkpgG~l~~~ 224 (289)
..+ .+++.+++++.++|||||.+++.
T Consensus 235 ~~~~ehvg~~~~~~~l~~i~r~LkpGG~lvl~ 266 (383)
T PRK11705 235 VGMFEHVGPKNYRTYFEVVRRCLKPDGLFLLH 266 (383)
T ss_pred eCchhhCChHHHHHHHHHHHHHcCCCcEEEEE
Confidence 742 35688999999999999999875
No 113
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=99.43 E-value=3.8e-12 Score=107.73 Aligned_cols=96 Identities=15% Similarity=0.180 Sum_probs=75.3
Q ss_pred CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCcCCCCceEEEEcCc
Q 022962 122 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARAV 201 (289)
Q Consensus 122 ~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~~~~~fD~V~sn~~ 201 (289)
-.++||+|||.|.++..||.. ..+++++|+|+.+++.|++.... ..+|+++++|+.+... .++||+|+...+
T Consensus 44 y~~alEvGCs~G~lT~~LA~r--Cd~LlavDis~~Al~~Ar~Rl~~--~~~V~~~~~dvp~~~P----~~~FDLIV~SEV 115 (201)
T PF05401_consen 44 YRRALEVGCSIGVLTERLAPR--CDRLLAVDISPRALARARERLAG--LPHVEWIQADVPEFWP----EGRFDLIVLSEV 115 (201)
T ss_dssp EEEEEEE--TTSHHHHHHGGG--EEEEEEEES-HHHHHHHHHHTTT---SSEEEEES-TTT-------SS-EEEEEEES-
T ss_pred cceeEecCCCccHHHHHHHHh--hCceEEEeCCHHHHHHHHHhcCC--CCCeEEEECcCCCCCC----CCCeeEEEEehH
Confidence 358999999999999999977 46999999999999999997664 4589999999977543 379999999853
Q ss_pred -------ccHHHHHHHHccccccCeEEEEEE
Q 022962 202 -------AEMRILAEYCLPLVRVGGLFVAAK 225 (289)
Q Consensus 202 -------~~~~~ll~~~~~~LkpgG~l~~~~ 225 (289)
+++..++..+...|+|||.+++-+
T Consensus 116 lYYL~~~~~L~~~l~~l~~~L~pgG~LV~g~ 146 (201)
T PF05401_consen 116 LYYLDDAEDLRAALDRLVAALAPGGHLVFGH 146 (201)
T ss_dssp GGGSSSHHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred hHcCCCHHHHHHHHHHHHHHhCCCCEEEEEE
Confidence 357789999999999999999875
No 114
>PHA03411 putative methyltransferase; Provisional
Probab=99.43 E-value=5.1e-12 Score=112.75 Aligned_cols=124 Identities=12% Similarity=0.110 Sum_probs=92.7
Q ss_pred CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCcCCCCceEEEEcC-
Q 022962 122 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARA- 200 (289)
Q Consensus 122 ~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~~~~~fD~V~sn~- 200 (289)
+.+|||+|||+|.+++.++...+..+|+|+|+|+.+++.++++. .+++++++|+.++.. .++||+|++|.
T Consensus 65 ~grVLDLGcGsGilsl~la~r~~~~~V~gVDisp~al~~Ar~n~-----~~v~~v~~D~~e~~~----~~kFDlIIsNPP 135 (279)
T PHA03411 65 TGKVLDLCAGIGRLSFCMLHRCKPEKIVCVELNPEFARIGKRLL-----PEAEWITSDVFEFES----NEKFDVVISNPP 135 (279)
T ss_pred CCeEEEcCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhC-----cCCEEEECchhhhcc----cCCCcEEEEcCC
Confidence 56999999999999998887766789999999999999998752 368899999988653 26899999983
Q ss_pred --------------c-------c--cHHHHHHHHccccccCeEEEEEEcCCcH----HHHHHHHHHHHHhCCeEeEEeee
Q 022962 201 --------------V-------A--EMRILAEYCLPLVRVGGLFVAAKGHDPQ----EEVKNSERAVQLMGASLLQLCSV 253 (289)
Q Consensus 201 --------------~-------~--~~~~ll~~~~~~LkpgG~l~~~~g~~~~----~ei~~~~~~l~~~g~~~~~~~~~ 253 (289)
. . .+..++..+..+|+|+|.+++.....+. -.-.+..+.++..||...--|-+
T Consensus 136 F~~l~~~d~~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p~G~~~~~yss~~~y~~sl~~~~y~~~l~~~g~~~~~~~~~ 215 (279)
T PHA03411 136 FGKINTTDTKDVFEYTGGEFEFKVMTLGQKFADVGYFIVPTGSAGFAYSGRPYYDGTMKSNKYLKWSKQTGLVTYAGCGI 215 (279)
T ss_pred ccccCchhhhhhhhhccCccccccccHHHHHhhhHheecCCceEEEEEeccccccccCCHHHHHHHHHhcCcEecCCCCc
Confidence 0 0 1367888889999999988876533211 11133445677889876655544
Q ss_pred e
Q 022962 254 E 254 (289)
Q Consensus 254 ~ 254 (289)
+
T Consensus 216 ~ 216 (279)
T PHA03411 216 D 216 (279)
T ss_pred c
Confidence 3
No 115
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=99.42 E-value=1.6e-12 Score=116.67 Aligned_cols=102 Identities=17% Similarity=0.190 Sum_probs=78.7
Q ss_pred CCCeEEEEcCCCCh----HHHHHHHHCC-----CCEEEEEeCChHHHHHHHHHHH------Hc-------------C---
Q 022962 121 SNLKLVDVGTGAGL----PGLVLAIACP-----DWKVTLLESMNKRCVFLEHAVS------LT-------------Q--- 169 (289)
Q Consensus 121 ~~~~VLDiGcG~G~----~~l~la~~~p-----~~~V~~iD~s~~~l~~a~~~~~------~~-------------~--- 169 (289)
++.+|+|+|||||- +++.++...+ +.+|+|+|+|+.|++.|++.+- .. +
T Consensus 99 ~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~~~ 178 (264)
T smart00138 99 RRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDKYR 178 (264)
T ss_pred CCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCeEE
Confidence 35799999999996 5666665544 4799999999999999998431 00 0
Q ss_pred ----C-CCEEEEeccccccCCCCcCCCCceEEEEcCc------ccHHHHHHHHccccccCeEEEEEE
Q 022962 170 ----L-LNVQIVRGRAETLGKDVSFREQYDVAVARAV------AEMRILAEYCLPLVRVGGLFVAAK 225 (289)
Q Consensus 170 ----l-~ni~~~~~d~~~~~~~~~~~~~fD~V~sn~~------~~~~~ll~~~~~~LkpgG~l~~~~ 225 (289)
+ ++|+|.+.|+.+.+.. .++||+|+|+.+ .....+++.+.+.|+|||+|++-.
T Consensus 179 v~~~ir~~V~F~~~dl~~~~~~---~~~fD~I~crnvl~yf~~~~~~~~l~~l~~~L~pGG~L~lg~ 242 (264)
T smart00138 179 VKPELKERVRFAKHNLLAESPP---LGDFDLIFCRNVLIYFDEPTQRKLLNRFAEALKPGGYLFLGH 242 (264)
T ss_pred EChHHhCcCEEeeccCCCCCCc---cCCCCEEEechhHHhCCHHHHHHHHHHHHHHhCCCeEEEEEC
Confidence 1 2689999999886542 378999999753 345689999999999999999744
No 116
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=99.42 E-value=4.4e-12 Score=119.33 Aligned_cols=138 Identities=11% Similarity=0.058 Sum_probs=103.3
Q ss_pred CCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCcCCCCceEEEEcC
Q 022962 121 SNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARA 200 (289)
Q Consensus 121 ~~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~~~~~fD~V~sn~ 200 (289)
++.+|||+|||+|.+++.+|.. +.+|+|||+|+.+++.|++|++.++++|++++++|++++... ..++||+|+++.
T Consensus 233 ~~~~vLDL~cG~G~~~l~la~~--~~~v~~vE~~~~av~~a~~N~~~~~~~~~~~~~~d~~~~~~~--~~~~~D~vi~DP 308 (374)
T TIGR02085 233 PVTQMWDLFCGVGGFGLHCAGP--DTQLTGIEIESEAIACAQQSAQMLGLDNLSFAALDSAKFATA--QMSAPELVLVNP 308 (374)
T ss_pred CCCEEEEccCCccHHHHHHhhc--CCeEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHHHHh--cCCCCCEEEECC
Confidence 3679999999999999999843 579999999999999999999999998999999999875421 124699999995
Q ss_pred cc-c-HHHHHHHHccccccCeEEEEEEcCCcHHHHHHHHHHHHHhCCeEeEEeeee-cCCCCCceEEEEEE
Q 022962 201 VA-E-MRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLLQLCSVE-SQSPFGQRTAVVCL 268 (289)
Q Consensus 201 ~~-~-~~~ll~~~~~~LkpgG~l~~~~g~~~~~ei~~~~~~l~~~g~~~~~~~~~~-~~~~~~~r~lv~~~ 268 (289)
.- . .+.+++.+. .++|++.+++..++. --..++. .| .||.+.++..++ +|....-..+++++
T Consensus 309 Pr~G~~~~~l~~l~-~~~p~~ivyvsc~p~--TlaRDl~-~L--~gy~l~~~~~~DmFPqT~HvE~v~ll~ 373 (374)
T TIGR02085 309 PRRGIGKELCDYLS-QMAPKFILYSSCNAQ--TMAKDIA-EL--SGYQIERVQLFDMFPHTSHYEVLTLLV 373 (374)
T ss_pred CCCCCcHHHHHHHH-hcCCCeEEEEEeCHH--HHHHHHH-Hh--cCceEEEEEEeccCCCCCcEEEEEEEe
Confidence 32 1 245555554 478999998877542 2223333 23 689999999887 56555555566654
No 117
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=99.41 E-value=4.1e-12 Score=122.19 Aligned_cols=125 Identities=18% Similarity=0.149 Sum_probs=94.9
Q ss_pred CCCCCeEEEEcCCCChHHHHHHHHC-CCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCcCCCCceEEE
Q 022962 119 CNSNLKLVDVGTGAGLPGLVLAIAC-PDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAV 197 (289)
Q Consensus 119 ~~~~~~VLDiGcG~G~~~l~la~~~-p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~~~~~fD~V~ 197 (289)
..++.+|||+|||+|..++.++... +.++|+|+|+|+.+++.++++++.+|+++|+++++|+.++.. +++||+|+
T Consensus 248 ~~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~v~~~~~Da~~~~~----~~~fD~Vl 323 (445)
T PRK14904 248 PQPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALGITIIETIEGDARSFSP----EEQPDAIL 323 (445)
T ss_pred CCCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhCCCeEEEEeCccccccc----CCCCCEEE
Confidence 4467899999999999999888764 357999999999999999999999999889999999987643 26799999
Q ss_pred EcCc-------------------c-------cHHHHHHHHccccccCeEEEEEEcCCcHHH-HHHHHHHHHHh-CCeE
Q 022962 198 ARAV-------------------A-------EMRILAEYCLPLVRVGGLFVAAKGHDPQEE-VKNSERAVQLM-GASL 247 (289)
Q Consensus 198 sn~~-------------------~-------~~~~ll~~~~~~LkpgG~l~~~~g~~~~~e-i~~~~~~l~~~-g~~~ 247 (289)
+.+. . ....++..+.++|||||++++..-....+| -.-+...++.+ ++..
T Consensus 324 ~D~Pcsg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvystcs~~~~Ene~~v~~~l~~~~~~~~ 401 (445)
T PRK14904 324 LDAPCTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKPGGVLVYATCSIEPEENELQIEAFLQRHPEFSA 401 (445)
T ss_pred EcCCCCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCChhhHHHHHHHHHHhCCCCEE
Confidence 7521 0 124689999999999999998664332222 22233444454 4554
No 118
>KOG4300 consensus Predicted methyltransferase [General function prediction only]
Probab=99.41 E-value=9e-13 Score=111.41 Aligned_cols=101 Identities=22% Similarity=0.207 Sum_probs=83.4
Q ss_pred CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEE-EEeccccccCCCCcCCCCceEEEEc-
Q 022962 122 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQ-IVRGRAETLGKDVSFREQYDVAVAR- 199 (289)
Q Consensus 122 ~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~-~~~~d~~~~~~~~~~~~~fD~V~sn- 199 (289)
...||+||||||..= ..-...|..+||++|++++|-+++.+.+++....++. |+.++.++++.. .+++||.|++.
T Consensus 77 K~~vLEvgcGtG~Nf-kfy~~~p~~svt~lDpn~~mee~~~ks~~E~k~~~~~~fvva~ge~l~~l--~d~s~DtVV~Tl 153 (252)
T KOG4300|consen 77 KGDVLEVGCGTGANF-KFYPWKPINSVTCLDPNEKMEEIADKSAAEKKPLQVERFVVADGENLPQL--ADGSYDTVVCTL 153 (252)
T ss_pred ccceEEecccCCCCc-ccccCCCCceEEEeCCcHHHHHHHHHHHhhccCcceEEEEeechhcCccc--ccCCeeeEEEEE
Confidence 457899999999742 2211236889999999999999999999888766776 999999998742 25899999987
Q ss_pred ---CcccHHHHHHHHccccccCeEEEEEE
Q 022962 200 ---AVAEMRILAEYCLPLVRVGGLFVAAK 225 (289)
Q Consensus 200 ---~~~~~~~ll~~~~~~LkpgG~l~~~~ 225 (289)
++.+....|+++.++|+|||++++..
T Consensus 154 vLCSve~~~k~L~e~~rlLRpgG~iifiE 182 (252)
T KOG4300|consen 154 VLCSVEDPVKQLNEVRRLLRPGGRIIFIE 182 (252)
T ss_pred EEeccCCHHHHHHHHHHhcCCCcEEEEEe
Confidence 57789999999999999999999753
No 119
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=99.40 E-value=2.1e-11 Score=111.91 Aligned_cols=120 Identities=15% Similarity=0.127 Sum_probs=85.1
Q ss_pred CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcC-----CCCEEEEeccccccCCCCcCCCCceEE
Q 022962 122 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQ-----LLNVQIVRGRAETLGKDVSFREQYDVA 196 (289)
Q Consensus 122 ~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~-----l~ni~~~~~d~~~~~~~~~~~~~fD~V 196 (289)
+.+|||||||+|.+++.++.. +.+|+|+|+|+.|++.++++++..+ ..++++..+|++++ +++||+|
T Consensus 145 ~~~VLDlGcGtG~~a~~la~~--g~~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~~l------~~~fD~V 216 (315)
T PLN02585 145 GVTVCDAGCGTGSLAIPLALE--GAIVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDLESL------SGKYDTV 216 (315)
T ss_pred CCEEEEecCCCCHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcchhhc------CCCcCEE
Confidence 679999999999999999965 6799999999999999999987652 23688888888764 2689999
Q ss_pred EEcCcc------cHHHHHHHHccccccCeEEEEEEcCCcH-----------------------HHHHHHHHHHHHhCCeE
Q 022962 197 VARAVA------EMRILAEYCLPLVRVGGLFVAAKGHDPQ-----------------------EEVKNSERAVQLMGASL 247 (289)
Q Consensus 197 ~sn~~~------~~~~ll~~~~~~LkpgG~l~~~~g~~~~-----------------------~ei~~~~~~l~~~g~~~ 247 (289)
+|..+- ....+++.+.+ +.+||.++.. .+... ....++.+.++..||++
T Consensus 217 v~~~vL~H~p~~~~~~ll~~l~~-l~~g~liIs~-~p~~~~~~~l~~~g~~~~g~~~~~r~y~~s~eel~~lL~~AGf~v 294 (315)
T PLN02585 217 TCLDVLIHYPQDKADGMIAHLAS-LAEKRLIISF-APKTLYYDILKRIGELFPGPSKATRAYLHAEADVERALKKAGWKV 294 (315)
T ss_pred EEcCEEEecCHHHHHHHHHHHHh-hcCCEEEEEe-CCcchHHHHHHHHHhhcCCCCcCceeeeCCHHHHHHHHHHCCCEE
Confidence 987431 23456666654 4566665532 21100 01244556677889987
Q ss_pred eEEe
Q 022962 248 LQLC 251 (289)
Q Consensus 248 ~~~~ 251 (289)
....
T Consensus 295 ~~~~ 298 (315)
T PLN02585 295 ARRE 298 (315)
T ss_pred EEEE
Confidence 6554
No 120
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=99.40 E-value=3.5e-12 Score=110.25 Aligned_cols=92 Identities=11% Similarity=0.096 Sum_probs=73.5
Q ss_pred CCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCcCCCCceEEEEcC
Q 022962 121 SNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARA 200 (289)
Q Consensus 121 ~~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~~~~~fD~V~sn~ 200 (289)
++.+|||+|||+|.++..++...|+.+++|||+|+.|++.|+++. .++.++++|+.+ +.. +++||+|+++.
T Consensus 43 ~~~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~~~l~~A~~~~-----~~~~~~~~d~~~-~~~---~~sfD~V~~~~ 113 (204)
T TIGR03587 43 KIASILELGANIGMNLAALKRLLPFKHIYGVEINEYAVEKAKAYL-----PNINIIQGSLFD-PFK---DNFFDLVLTKG 113 (204)
T ss_pred CCCcEEEEecCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHhhC-----CCCcEEEeeccC-CCC---CCCEEEEEECC
Confidence 367899999999999999988778899999999999999998753 357788888877 332 47899999986
Q ss_pred c------ccHHHHHHHHccccccCeEEEE
Q 022962 201 V------AEMRILAEYCLPLVRVGGLFVA 223 (289)
Q Consensus 201 ~------~~~~~ll~~~~~~LkpgG~l~~ 223 (289)
+ .....+++++.+++ ++.+++
T Consensus 114 vL~hl~p~~~~~~l~el~r~~--~~~v~i 140 (204)
T TIGR03587 114 VLIHINPDNLPTAYRELYRCS--NRYILI 140 (204)
T ss_pred hhhhCCHHHHHHHHHHHHhhc--CcEEEE
Confidence 3 23578888888887 455554
No 121
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=99.39 E-value=2.3e-12 Score=112.09 Aligned_cols=99 Identities=18% Similarity=0.020 Sum_probs=75.6
Q ss_pred CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHH------------cCCCCEEEEeccccccCCCCcC
Q 022962 122 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSL------------TQLLNVQIVRGRAETLGKDVSF 189 (289)
Q Consensus 122 ~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~------------~~l~ni~~~~~d~~~~~~~~~~ 189 (289)
+.+|||+|||.|..++.||.+ +.+|+|||+|+.+++.+...... ..-.+|+++++|+.++... .
T Consensus 35 ~~rvLd~GCG~G~da~~LA~~--G~~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~--~ 110 (213)
T TIGR03840 35 GARVFVPLCGKSLDLAWLAEQ--GHRVLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIEIFCGDFFALTAA--D 110 (213)
T ss_pred CCeEEEeCCCchhHHHHHHhC--CCeEEEEeCCHHHHHHHHHHcCCCcceeccccceeeecCceEEEEccCCCCCcc--c
Confidence 679999999999999999965 78999999999999976432110 0113589999999887642 1
Q ss_pred CCCceEEEEcC------cccHHHHHHHHccccccCeEEEEE
Q 022962 190 REQYDVAVARA------VAEMRILAEYCLPLVRVGGLFVAA 224 (289)
Q Consensus 190 ~~~fD~V~sn~------~~~~~~ll~~~~~~LkpgG~l~~~ 224 (289)
.++||.|+-++ ....+.+++.+.++|||||+++++
T Consensus 111 ~~~fD~i~D~~~~~~l~~~~R~~~~~~l~~lLkpgG~~ll~ 151 (213)
T TIGR03840 111 LGPVDAVYDRAALIALPEEMRQRYAAHLLALLPPGARQLLI 151 (213)
T ss_pred CCCcCEEEechhhccCCHHHHHHHHHHHHHHcCCCCeEEEE
Confidence 25688888663 234578999999999999986554
No 122
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=99.39 E-value=7.1e-12 Score=107.56 Aligned_cols=124 Identities=19% Similarity=0.131 Sum_probs=96.1
Q ss_pred CeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCcCCCCceEEEEcCcc
Q 022962 123 LKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARAVA 202 (289)
Q Consensus 123 ~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~~~~~fD~V~sn~~~ 202 (289)
..+||||||.|...+.+|..+|+..++|||++...+..+...+...+++|+.++++|+..+-.....++++|.|..+-..
T Consensus 19 ~l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~~v~~a~~~~~~~~l~Nv~~~~~da~~~l~~~~~~~~v~~i~i~FPD 98 (195)
T PF02390_consen 19 PLILEIGCGKGEFLIELAKRNPDINFIGIEIRKKRVAKALRKAEKRGLKNVRFLRGDARELLRRLFPPGSVDRIYINFPD 98 (195)
T ss_dssp EEEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHHHHHTTSSEEEEES-CTTHHHHHSTTTSEEEEEEES--
T ss_pred CeEEEecCCCCHHHHHHHHHCCCCCEEEEecchHHHHHHHHHHHhhcccceEEEEccHHHHHhhcccCCchheEEEeCCC
Confidence 38999999999999999999999999999999999999999999999999999999998732211113789999998321
Q ss_pred ------------cHHHHHHHHccccccCeEEEEEEcCCcHHHHHHHHHHHHHh--CCeEe
Q 022962 203 ------------EMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLM--GASLL 248 (289)
Q Consensus 203 ------------~~~~ll~~~~~~LkpgG~l~~~~g~~~~~ei~~~~~~l~~~--g~~~~ 248 (289)
--+.+++.+.+.|+|||.+.+... ..+-...+.+.+... +|+..
T Consensus 99 PWpK~rH~krRl~~~~fl~~~~~~L~~gG~l~~~TD--~~~y~~~~~~~~~~~~~~f~~~ 156 (195)
T PF02390_consen 99 PWPKKRHHKRRLVNPEFLELLARVLKPGGELYFATD--VEEYAEWMLEQFEESHPGFENI 156 (195)
T ss_dssp ---SGGGGGGSTTSHHHHHHHHHHEEEEEEEEEEES---HHHHHHHHHHHHHHSTTEEEE
T ss_pred CCcccchhhhhcCCchHHHHHHHHcCCCCEEEEEeC--CHHHHHHHHHHHHhcCcCeEEc
Confidence 127899999999999999988653 445555566667674 56544
No 123
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=99.38 E-value=6.7e-12 Score=120.24 Aligned_cols=129 Identities=15% Similarity=0.108 Sum_probs=97.5
Q ss_pred CCCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCcC-CCCceEEEE
Q 022962 120 NSNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSF-REQYDVAVA 198 (289)
Q Consensus 120 ~~~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~~-~~~fD~V~s 198 (289)
.++.+|||+|||+|.+++.+|.. ..+|+|+|+|+.+++.|++|++.++++|++++++|+.+....... +++||+|++
T Consensus 291 ~~~~~vLDl~cG~G~~sl~la~~--~~~V~~vE~~~~av~~a~~n~~~~~~~nv~~~~~d~~~~l~~~~~~~~~~D~vi~ 368 (431)
T TIGR00479 291 QGEELVVDAYCGVGTFTLPLAKQ--AKSVVGIEVVPESVEKAQQNAELNGIANVEFLAGTLETVLPKQPWAGQIPDVLLL 368 (431)
T ss_pred CCCCEEEEcCCCcCHHHHHHHHh--CCEEEEEEcCHHHHHHHHHHHHHhCCCceEEEeCCHHHHHHHHHhcCCCCCEEEE
Confidence 45679999999999999999976 468999999999999999999999999999999999874211001 257999999
Q ss_pred cCcc-c-HHHHHHHHccccccCeEEEEEEcCCcHHHHHHHHHHHHHhCCeEeEEeeee
Q 022962 199 RAVA-E-MRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLLQLCSVE 254 (289)
Q Consensus 199 n~~~-~-~~~ll~~~~~~LkpgG~l~~~~g~~~~~ei~~~~~~l~~~g~~~~~~~~~~ 254 (289)
+... . ...+++.+.+ ++|++.+++...+ ..+..-.+.+...|+.+..+..++
T Consensus 369 dPPr~G~~~~~l~~l~~-l~~~~ivyvsc~p---~tlard~~~l~~~gy~~~~~~~~D 422 (431)
T TIGR00479 369 DPPRKGCAAEVLRTIIE-LKPERIVYVSCNP---ATLARDLEFLCKEGYGITWVQPVD 422 (431)
T ss_pred CcCCCCCCHHHHHHHHh-cCCCEEEEEcCCH---HHHHHHHHHHHHCCeeEEEEEEec
Confidence 8532 2 3566666554 8899887765432 233333445667899999988876
No 124
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=99.38 E-value=5.3e-12 Score=108.56 Aligned_cols=103 Identities=15% Similarity=0.037 Sum_probs=80.5
Q ss_pred CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCcCCCCceEEEEcCc
Q 022962 122 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARAV 201 (289)
Q Consensus 122 ~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~~~~~fD~V~sn~~ 201 (289)
+.+|||+|||+|.+++.++.. ...+|+++|+++.+++.+++|++.+++++++++++|+.+.... ..++||+|++|+.
T Consensus 54 ~~~vLDl~~GsG~l~l~~lsr-~a~~V~~vE~~~~a~~~a~~Nl~~~~~~~v~~~~~D~~~~l~~--~~~~fDlV~~DPP 130 (199)
T PRK10909 54 DARCLDCFAGSGALGLEALSR-YAAGATLLEMDRAVAQQLIKNLATLKAGNARVVNTNALSFLAQ--PGTPHNVVFVDPP 130 (199)
T ss_pred CCEEEEcCCCccHHHHHHHHc-CCCEEEEEECCHHHHHHHHHHHHHhCCCcEEEEEchHHHHHhh--cCCCceEEEECCC
Confidence 679999999999999864433 2579999999999999999999999988899999999774321 1357999999963
Q ss_pred --cc-HHHHHHHHc--cccccCeEEEEEEcC
Q 022962 202 --AE-MRILAEYCL--PLVRVGGLFVAAKGH 227 (289)
Q Consensus 202 --~~-~~~ll~~~~--~~LkpgG~l~~~~g~ 227 (289)
.. .+.+++.+. .+|+|+|.+++++..
T Consensus 131 y~~g~~~~~l~~l~~~~~l~~~~iv~ve~~~ 161 (199)
T PRK10909 131 FRKGLLEETINLLEDNGWLADEALIYVESEV 161 (199)
T ss_pred CCCChHHHHHHHHHHCCCcCCCcEEEEEecC
Confidence 22 334444443 458999999998764
No 125
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=99.38 E-value=3e-11 Score=105.50 Aligned_cols=98 Identities=16% Similarity=-0.015 Sum_probs=74.9
Q ss_pred CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHH------------HcCCCCEEEEeccccccCCCCcC
Q 022962 122 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVS------------LTQLLNVQIVRGRAETLGKDVSF 189 (289)
Q Consensus 122 ~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~------------~~~l~ni~~~~~d~~~~~~~~~~ 189 (289)
+.+|||+|||.|..++.||.. +.+|+|||+|+.+++.+..... ...-.+|++.++|+.++....
T Consensus 38 ~~rvL~~gCG~G~da~~LA~~--G~~V~avD~s~~Ai~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~l~~~~-- 113 (218)
T PRK13255 38 GSRVLVPLCGKSLDMLWLAEQ--GHEVLGVELSELAVEQFFAENGLTPQTRQSGEFEHYQAGEITIYCGDFFALTAAD-- 113 (218)
T ss_pred CCeEEEeCCCChHhHHHHHhC--CCeEEEEccCHHHHHHHHHHcCCCccccccccccccccCceEEEECcccCCCccc--
Confidence 679999999999999999964 7899999999999997643110 001136899999999875431
Q ss_pred CCCceEEEEcC------cccHHHHHHHHccccccCeEEEE
Q 022962 190 REQYDVAVARA------VAEMRILAEYCLPLVRVGGLFVA 223 (289)
Q Consensus 190 ~~~fD~V~sn~------~~~~~~ll~~~~~~LkpgG~l~~ 223 (289)
...||+|+-.+ ......+++.+.++|+|||++++
T Consensus 114 ~~~fd~v~D~~~~~~l~~~~R~~~~~~l~~lL~pgG~~~l 153 (218)
T PRK13255 114 LADVDAVYDRAALIALPEEMRERYVQQLAALLPAGCRGLL 153 (218)
T ss_pred CCCeeEEEehHhHhhCCHHHHHHHHHHHHHHcCCCCeEEE
Confidence 24799999653 23467899999999999986443
No 126
>PHA03412 putative methyltransferase; Provisional
Probab=99.36 E-value=7.6e-12 Score=109.31 Aligned_cols=92 Identities=14% Similarity=0.130 Sum_probs=72.8
Q ss_pred CCeEEEEcCCCChHHHHHHHHC---CCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCcCCCCceEEEE
Q 022962 122 NLKLVDVGTGAGLPGLVLAIAC---PDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVA 198 (289)
Q Consensus 122 ~~~VLDiGcG~G~~~l~la~~~---p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~~~~~fD~V~s 198 (289)
+.+|||+|||+|.+++.++... +..+|+|+|+++.+++.|+++. .++.++++|+..... +++||+|++
T Consensus 50 ~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~-----~~~~~~~~D~~~~~~----~~~FDlIIs 120 (241)
T PHA03412 50 SGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIV-----PEATWINADALTTEF----DTLFDMAIS 120 (241)
T ss_pred CCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhc-----cCCEEEEcchhcccc----cCCccEEEE
Confidence 5799999999999999998764 3579999999999999999864 358899999986543 368999999
Q ss_pred cC------c----------ccHHHHHHHHccccccCeEEEE
Q 022962 199 RA------V----------AEMRILAEYCLPLVRVGGLFVA 223 (289)
Q Consensus 199 n~------~----------~~~~~ll~~~~~~LkpgG~l~~ 223 (289)
|. . .....+++.+.+++++|+. ++
T Consensus 121 NPPY~~~~~~d~~ar~~g~~~~~~li~~A~~Ll~~G~~-IL 160 (241)
T PHA03412 121 NPPFGKIKTSDFKGKYTGAEFEYKVIERASQIARQGTF-II 160 (241)
T ss_pred CCCCCCccccccCCcccccHHHHHHHHHHHHHcCCCEE-Ee
Confidence 93 0 1246688888886666665 54
No 127
>PRK11727 23S rRNA mA1618 methyltransferase; Provisional
Probab=99.36 E-value=2.3e-11 Score=111.52 Aligned_cols=80 Identities=14% Similarity=0.248 Sum_probs=63.1
Q ss_pred CCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHc-CCC-CEEEEe-ccccccCCCC-cCCCCceEE
Q 022962 121 SNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLT-QLL-NVQIVR-GRAETLGKDV-SFREQYDVA 196 (289)
Q Consensus 121 ~~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~-~l~-ni~~~~-~d~~~~~~~~-~~~~~fD~V 196 (289)
.+.++||||||+|++...++...++++++|+|+|+.+++.|++|++.+ ++. +|++.+ .+..++.... ...+.||+|
T Consensus 114 ~~~~vLDIGtGag~I~~lLa~~~~~~~~~atDId~~Al~~A~~Nv~~Np~l~~~I~~~~~~~~~~i~~~i~~~~~~fDli 193 (321)
T PRK11727 114 ANVRVLDIGVGANCIYPLIGVHEYGWRFVGSDIDPQALASAQAIISANPGLNGAIRLRLQKDSKAIFKGIIHKNERFDAT 193 (321)
T ss_pred CCceEEEecCCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhccCCcCcEEEEEccchhhhhhcccccCCceEEE
Confidence 367999999999999988888878899999999999999999999999 775 588764 3443332110 013689999
Q ss_pred EEcC
Q 022962 197 VARA 200 (289)
Q Consensus 197 ~sn~ 200 (289)
+||.
T Consensus 194 vcNP 197 (321)
T PRK11727 194 LCNP 197 (321)
T ss_pred EeCC
Confidence 9993
No 128
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=99.36 E-value=7.8e-12 Score=93.38 Aligned_cols=98 Identities=26% Similarity=0.381 Sum_probs=80.7
Q ss_pred eEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCcCCCCceEEEEcCcc-
Q 022962 124 KLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARAVA- 202 (289)
Q Consensus 124 ~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~~~~~fD~V~sn~~~- 202 (289)
+++|+|||+|..+..++. .+..+++++|+++.++..+++.....+..++++++.|+.+.... ..++||+|+++...
T Consensus 1 ~ildig~G~G~~~~~~~~-~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~d~i~~~~~~~ 77 (107)
T cd02440 1 RVLDLGCGTGALALALAS-GPGARVTGVDISPVALELARKAAAALLADNVEVLKGDAEELPPE--ADESFDVIISDPPLH 77 (107)
T ss_pred CeEEEcCCccHHHHHHhc-CCCCEEEEEeCCHHHHHHHHHHHhcccccceEEEEcChhhhccc--cCCceEEEEEcccee
Confidence 489999999999888886 56789999999999999998655555556799999999886531 23689999998643
Q ss_pred ----cHHHHHHHHccccccCeEEEEE
Q 022962 203 ----EMRILAEYCLPLVRVGGLFVAA 224 (289)
Q Consensus 203 ----~~~~ll~~~~~~LkpgG~l~~~ 224 (289)
....+++.+.+.|+|||.+++.
T Consensus 78 ~~~~~~~~~l~~~~~~l~~~g~~~~~ 103 (107)
T cd02440 78 HLVEDLARFLEEARRLLKPGGVLVLT 103 (107)
T ss_pred ehhhHHHHHHHHHHHHcCCCCEEEEE
Confidence 4589999999999999999875
No 129
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=99.36 E-value=6.8e-11 Score=99.09 Aligned_cols=121 Identities=12% Similarity=0.155 Sum_probs=85.4
Q ss_pred CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCcCCCCceEEEEcCc
Q 022962 122 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARAV 201 (289)
Q Consensus 122 ~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~~~~~fD~V~sn~~ 201 (289)
+.+|+|+|||||.+++..+.. ...+|+|+|+++++++.+++|+.++ ..+|.|+.+|+.++. ..||.+++|..
T Consensus 46 g~~V~DlG~GTG~La~ga~~l-Ga~~V~~vdiD~~a~ei~r~N~~~l-~g~v~f~~~dv~~~~------~~~dtvimNPP 117 (198)
T COG2263 46 GKTVLDLGAGTGILAIGAALL-GASRVLAVDIDPEALEIARANAEEL-LGDVEFVVADVSDFR------GKFDTVIMNPP 117 (198)
T ss_pred CCEEEEcCCCcCHHHHHHHhc-CCcEEEEEecCHHHHHHHHHHHHhh-CCceEEEEcchhhcC------CccceEEECCC
Confidence 778999999999999997754 5679999999999999999999994 347999999999864 67999999941
Q ss_pred -------ccHHHHHHHHccccccCeEEEEEEcCCcHHHHHHHHHHHHHhCCeEeEEeeeecCC
Q 022962 202 -------AEMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLLQLCSVESQS 257 (289)
Q Consensus 202 -------~~~~~ll~~~~~~LkpgG~l~~~~g~~~~~ei~~~~~~l~~~g~~~~~~~~~~~~~ 257 (289)
+++ .++..+.+.- -.++-.+.....+- +.+..+.+|+.+..+....++-
T Consensus 118 FG~~~rhaDr-~Fl~~Ale~s---~vVYsiH~a~~~~f---~~~~~~~~G~~v~~~~~~~~~i 173 (198)
T COG2263 118 FGSQRRHADR-PFLLKALEIS---DVVYSIHKAGSRDF---VEKFAADLGGTVTHIERARFPI 173 (198)
T ss_pred CccccccCCH-HHHHHHHHhh---heEEEeeccccHHH---HHHHHHhcCCeEEEEEEEEEec
Confidence 233 3444333332 23333333332222 3345568898877765554433
No 130
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=99.36 E-value=4.3e-12 Score=109.94 Aligned_cols=102 Identities=25% Similarity=0.416 Sum_probs=89.2
Q ss_pred CCCeEEEEcCCCChHHHHHHHHCC-CCEEEEEeCChHHHHHHHHHHHHcCCCC-EEEEe-ccccccCCCCcCCCCceEEE
Q 022962 121 SNLKLVDVGTGAGLPGLVLAIACP-DWKVTLLESMNKRCVFLEHAVSLTQLLN-VQIVR-GRAETLGKDVSFREQYDVAV 197 (289)
Q Consensus 121 ~~~~VLDiGcG~G~~~l~la~~~p-~~~V~~iD~s~~~l~~a~~~~~~~~l~n-i~~~~-~d~~~~~~~~~~~~~fD~V~ 197 (289)
++.+||+|||+.|+.++.+|...| +++++.||+++++.+.|++|.++.|+.+ |+.+. +|..+.-.. ...++||+|+
T Consensus 59 ~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~gdal~~l~~-~~~~~fDliF 137 (219)
T COG4122 59 GPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGVDDRIELLLGGDALDVLSR-LLDGSFDLVF 137 (219)
T ss_pred CCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCCcceEEEEecCcHHHHHHh-ccCCCccEEE
Confidence 478999999999999999999988 7899999999999999999999999976 88888 477664332 1247999999
Q ss_pred EcC-cccHHHHHHHHccccccCeEEEE
Q 022962 198 ARA-VAEMRILAEYCLPLVRVGGLFVA 223 (289)
Q Consensus 198 sn~-~~~~~~ll~~~~~~LkpgG~l~~ 223 (289)
..+ -++++.+++.+.++|+|||.+++
T Consensus 138 IDadK~~yp~~le~~~~lLr~GGliv~ 164 (219)
T COG4122 138 IDADKADYPEYLERALPLLRPGGLIVA 164 (219)
T ss_pred EeCChhhCHHHHHHHHHHhCCCcEEEE
Confidence 986 56889999999999999999985
No 131
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=99.34 E-value=2.1e-11 Score=106.56 Aligned_cols=124 Identities=20% Similarity=0.218 Sum_probs=88.6
Q ss_pred CCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCC-CCEEEEeccccccCCCCcCCCCceEEEEc
Q 022962 121 SNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQL-LNVQIVRGRAETLGKDVSFREQYDVAVAR 199 (289)
Q Consensus 121 ~~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l-~ni~~~~~d~~~~~~~~~~~~~fD~V~sn 199 (289)
++.+|||||||+|..+..++.. ..+|+|+|+|+.+++.|+++....+. +++.+..+|+... +++||+|+++
T Consensus 63 ~~~~vLDvGcG~G~~~~~l~~~--~~~v~~~D~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~------~~~fD~v~~~ 134 (230)
T PRK07580 63 TGLRILDAGCGVGSLSIPLARR--GAKVVASDISPQMVEEARERAPEAGLAGNITFEVGDLESL------LGRFDTVVCL 134 (230)
T ss_pred CCCEEEEEeCCCCHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHhcCCccCcEEEEcCchhc------cCCcCEEEEc
Confidence 3679999999999999999865 45799999999999999999888776 4699999985432 3679999987
Q ss_pred Cc------ccHHHHHHHHccccccCeEEEEEEcCCcH----------------------HHHHHHHHHHHHhCCeEeEEe
Q 022962 200 AV------AEMRILAEYCLPLVRVGGLFVAAKGHDPQ----------------------EEVKNSERAVQLMGASLLQLC 251 (289)
Q Consensus 200 ~~------~~~~~ll~~~~~~LkpgG~l~~~~g~~~~----------------------~ei~~~~~~l~~~g~~~~~~~ 251 (289)
.+ .....+++.+.+.+++++.+.+ ...... -...++.+.+...||.+.++.
T Consensus 135 ~~l~~~~~~~~~~~l~~l~~~~~~~~~i~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~ 213 (230)
T PRK07580 135 DVLIHYPQEDAARMLAHLASLTRGSLIFTF-APYTPLLALLHWIGGLFPGPSRTTRIYPHREKGIRRALAAAGFKVVRTE 213 (230)
T ss_pred chhhcCCHHHHHHHHHHHHhhcCCeEEEEE-CCccHHHHHHHHhccccCCccCCCCccccCHHHHHHHHHHCCCceEeee
Confidence 42 2456777888776654444332 211100 011334556778899888876
Q ss_pred ee
Q 022962 252 SV 253 (289)
Q Consensus 252 ~~ 253 (289)
.+
T Consensus 214 ~~ 215 (230)
T PRK07580 214 RI 215 (230)
T ss_pred ec
Confidence 54
No 132
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=99.34 E-value=1.8e-11 Score=117.04 Aligned_cols=108 Identities=17% Similarity=0.177 Sum_probs=84.4
Q ss_pred CCCCCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCC-CEEEEeccccccCCCCcCCCCceEE
Q 022962 118 SCNSNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLL-NVQIVRGRAETLGKDVSFREQYDVA 196 (289)
Q Consensus 118 ~~~~~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~-ni~~~~~d~~~~~~~~~~~~~fD~V 196 (289)
...++.+|||+|||+|..++.++...+.++|+|+|+++++++.+++|++.+|++ ++++..+|....... ...++||.|
T Consensus 235 ~~~~g~~VLDlcag~G~kt~~la~~~~~~~v~a~D~~~~~l~~~~~n~~r~g~~~~v~~~~~d~~~~~~~-~~~~~fD~V 313 (426)
T TIGR00563 235 APQNEETILDACAAPGGKTTHILELAPQAQVVALDIHEHRLKRVYENLKRLGLTIKAETKDGDGRGPSQW-AENEQFDRI 313 (426)
T ss_pred CCCCCCeEEEeCCCccHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecccccccccc-ccccccCEE
Confidence 345688999999999999999998877789999999999999999999999986 233366666543320 013679999
Q ss_pred EEcCc----------cc----------------HHHHHHHHccccccCeEEEEEEc
Q 022962 197 VARAV----------AE----------------MRILAEYCLPLVRVGGLFVAAKG 226 (289)
Q Consensus 197 ~sn~~----------~~----------------~~~ll~~~~~~LkpgG~l~~~~g 226 (289)
++++. .+ ...+++.+.++|||||++++..-
T Consensus 314 llDaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvystc 369 (426)
T TIGR00563 314 LLDAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVYATC 369 (426)
T ss_pred EEcCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeC
Confidence 97631 01 26799999999999999997653
No 133
>PRK03612 spermidine synthase; Provisional
Probab=99.33 E-value=1.6e-11 Score=120.24 Aligned_cols=145 Identities=17% Similarity=0.143 Sum_probs=104.7
Q ss_pred CCCeEEEEcCCCChHHHHHHHHCCC-CEEEEEeCChHHHHHHHHHH--HH-----cCCCCEEEEeccccccCCCCcCCCC
Q 022962 121 SNLKLVDVGTGAGLPGLVLAIACPD-WKVTLLESMNKRCVFLEHAV--SL-----TQLLNVQIVRGRAETLGKDVSFREQ 192 (289)
Q Consensus 121 ~~~~VLDiGcG~G~~~l~la~~~p~-~~V~~iD~s~~~l~~a~~~~--~~-----~~l~ni~~~~~d~~~~~~~~~~~~~ 192 (289)
++.+|||||||+|..+..+++ ++. .+|+++|+|+++++.++++. .. ..-++++++++|..++... .+++
T Consensus 297 ~~~rVL~IG~G~G~~~~~ll~-~~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~--~~~~ 373 (521)
T PRK03612 297 RPRRVLVLGGGDGLALREVLK-YPDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRK--LAEK 373 (521)
T ss_pred CCCeEEEEcCCccHHHHHHHh-CCCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHh--CCCC
Confidence 467999999999999888875 455 79999999999999999842 22 1224699999999875322 2368
Q ss_pred ceEEEEcCccc---------HHHHHHHHccccccCeEEEEEEcC--CcHHHHHHHHHHHHHhCCeEeEEeeeecCCCCCc
Q 022962 193 YDVAVARAVAE---------MRILAEYCLPLVRVGGLFVAAKGH--DPQEEVKNSERAVQLMGASLLQLCSVESQSPFGQ 261 (289)
Q Consensus 193 fD~V~sn~~~~---------~~~ll~~~~~~LkpgG~l~~~~g~--~~~~ei~~~~~~l~~~g~~~~~~~~~~~~~~~~~ 261 (289)
||+|+++...+ .+++++.+.+.|+|||.+++..+. ...+.+.++.+.+++.|| .+.......|. .+.
T Consensus 374 fDvIi~D~~~~~~~~~~~L~t~ef~~~~~~~L~pgG~lv~~~~~~~~~~~~~~~i~~~l~~~gf-~v~~~~~~vps-~g~ 451 (521)
T PRK03612 374 FDVIIVDLPDPSNPALGKLYSVEFYRLLKRRLAPDGLLVVQSTSPYFAPKAFWSIEATLEAAGL-ATTPYHVNVPS-FGE 451 (521)
T ss_pred CCEEEEeCCCCCCcchhccchHHHHHHHHHhcCCCeEEEEecCCcccchHHHHHHHHHHHHcCC-EEEEEEeCCCC-cch
Confidence 99999984221 246889999999999999886542 235556778888999999 33332222233 467
Q ss_pred eEEEEEEec
Q 022962 262 RTAVVCLKS 270 (289)
Q Consensus 262 r~lv~~~k~ 270 (289)
+..++..|.
T Consensus 452 w~f~~as~~ 460 (521)
T PRK03612 452 WGFVLAGAG 460 (521)
T ss_pred hHHHeeeCC
Confidence 767777654
No 134
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=99.33 E-value=4.5e-12 Score=109.50 Aligned_cols=103 Identities=26% Similarity=0.337 Sum_probs=85.9
Q ss_pred CCeEEEEcCCCChHHHHHHHHCC-CCEEEEEeCChHHHHHHHHHHHHcCCC-CEEEEeccccccCCC---CcCCCCceEE
Q 022962 122 NLKLVDVGTGAGLPGLVLAIACP-DWKVTLLESMNKRCVFLEHAVSLTQLL-NVQIVRGRAETLGKD---VSFREQYDVA 196 (289)
Q Consensus 122 ~~~VLDiGcG~G~~~l~la~~~p-~~~V~~iD~s~~~l~~a~~~~~~~~l~-ni~~~~~d~~~~~~~---~~~~~~fD~V 196 (289)
..+||+||||+|+.++.+|...| +++|+.+|++++..+.|+++++..|+. +|+++.+|+.+.-.. ....++||+|
T Consensus 46 ~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~gda~~~l~~l~~~~~~~~fD~V 125 (205)
T PF01596_consen 46 PKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAGLDDRIEVIEGDALEVLPELANDGEEGQFDFV 125 (205)
T ss_dssp -SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTTGGGGEEEEES-HHHHHHHHHHTTTTTSEEEE
T ss_pred CceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcCCCCcEEEEEeccHhhHHHHHhccCCCceeEE
Confidence 67999999999999999998876 689999999999999999999999985 599999999874211 0012579999
Q ss_pred EEcCc-ccHHHHHHHHccccccCeEEEEE
Q 022962 197 VARAV-AEMRILAEYCLPLVRVGGLFVAA 224 (289)
Q Consensus 197 ~sn~~-~~~~~ll~~~~~~LkpgG~l~~~ 224 (289)
+..+. ..+...++.+.++|+|||.+++-
T Consensus 126 FiDa~K~~y~~y~~~~~~ll~~ggvii~D 154 (205)
T PF01596_consen 126 FIDADKRNYLEYFEKALPLLRPGGVIIAD 154 (205)
T ss_dssp EEESTGGGHHHHHHHHHHHEEEEEEEEEE
T ss_pred EEcccccchhhHHHHHhhhccCCeEEEEc
Confidence 99864 46889999999999999999863
No 135
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=99.33 E-value=3.4e-11 Score=112.79 Aligned_cols=138 Identities=14% Similarity=0.069 Sum_probs=100.6
Q ss_pred CeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCc-------------C
Q 022962 123 LKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVS-------------F 189 (289)
Q Consensus 123 ~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~-------------~ 189 (289)
.+|||++||+|.+++.+++. ..+|+|||+|+.+++.|++|++.++++|++++++|+.++..... .
T Consensus 208 ~~vLDl~~G~G~~sl~la~~--~~~v~~vE~~~~ai~~a~~N~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~~~~~~~ 285 (362)
T PRK05031 208 GDLLELYCGNGNFTLALARN--FRRVLATEISKPSVAAAQYNIAANGIDNVQIIRMSAEEFTQAMNGVREFNRLKGIDLK 285 (362)
T ss_pred CeEEEEeccccHHHHHHHhh--CCEEEEEECCHHHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHhhccccccccccccc
Confidence 57999999999999999876 35999999999999999999999999899999999987421100 0
Q ss_pred CCCceEEEEcCcc-c-HHHHHHHHccccccCeEEEEEEcCCcHHHHHHHHHHHHHhCCeEeEEeeee-cCCCCCceEEEE
Q 022962 190 REQYDVAVARAVA-E-MRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLLQLCSVE-SQSPFGQRTAVV 266 (289)
Q Consensus 190 ~~~fD~V~sn~~~-~-~~~ll~~~~~~LkpgG~l~~~~g~~~~~ei~~~~~~l~~~g~~~~~~~~~~-~~~~~~~r~lv~ 266 (289)
..+||+|+.++.. . .+.+++.+.+ +++.+++..++ ..-..++. .|.. ||.+.++..++ +|....-..+++
T Consensus 286 ~~~~D~v~lDPPR~G~~~~~l~~l~~---~~~ivyvSC~p--~tlarDl~-~L~~-gY~l~~v~~~DmFPqT~HvE~v~l 358 (362)
T PRK05031 286 SYNFSTIFVDPPRAGLDDETLKLVQA---YERILYISCNP--ETLCENLE-TLSQ-THKVERFALFDQFPYTHHMECGVL 358 (362)
T ss_pred CCCCCEEEECCCCCCCcHHHHHHHHc---cCCEEEEEeCH--HHHHHHHH-HHcC-CcEEEEEEEcccCCCCCcEEEEEE
Confidence 1258999998532 1 3455555544 68888877655 22223333 3333 99999999987 566655666666
Q ss_pred EEe
Q 022962 267 CLK 269 (289)
Q Consensus 267 ~~k 269 (289)
+++
T Consensus 359 L~r 361 (362)
T PRK05031 359 LEK 361 (362)
T ss_pred EEe
Confidence 654
No 136
>PLN02476 O-methyltransferase
Probab=99.32 E-value=9.5e-12 Score=111.76 Aligned_cols=103 Identities=24% Similarity=0.259 Sum_probs=87.7
Q ss_pred CCCeEEEEcCCCChHHHHHHHHCC-CCEEEEEeCChHHHHHHHHHHHHcCCC-CEEEEeccccccCCC---CcCCCCceE
Q 022962 121 SNLKLVDVGTGAGLPGLVLAIACP-DWKVTLLESMNKRCVFLEHAVSLTQLL-NVQIVRGRAETLGKD---VSFREQYDV 195 (289)
Q Consensus 121 ~~~~VLDiGcG~G~~~l~la~~~p-~~~V~~iD~s~~~l~~a~~~~~~~~l~-ni~~~~~d~~~~~~~---~~~~~~fD~ 195 (289)
++.+|||||||+|+.++.+|...| +++|+++|.++++++.|+++.++.|+. +|+++.+|+.+.-.. ....++||+
T Consensus 118 ~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li~GdA~e~L~~l~~~~~~~~FD~ 197 (278)
T PLN02476 118 GAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGVSHKVNVKHGLAAESLKSMIQNGEGSSYDF 197 (278)
T ss_pred CCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcccCCCCCE
Confidence 478999999999999999998764 679999999999999999999999996 699999999774211 001258999
Q ss_pred EEEcCc-ccHHHHHHHHccccccCeEEEE
Q 022962 196 AVARAV-AEMRILAEYCLPLVRVGGLFVA 223 (289)
Q Consensus 196 V~sn~~-~~~~~ll~~~~~~LkpgG~l~~ 223 (289)
|+..+. ..+..+++.+.++|+|||.+++
T Consensus 198 VFIDa~K~~Y~~y~e~~l~lL~~GGvIV~ 226 (278)
T PLN02476 198 AFVDADKRMYQDYFELLLQLVRVGGVIVM 226 (278)
T ss_pred EEECCCHHHHHHHHHHHHHhcCCCcEEEE
Confidence 999875 4688999999999999999885
No 137
>PRK01581 speE spermidine synthase; Validated
Probab=99.32 E-value=5.5e-11 Score=109.98 Aligned_cols=148 Identities=12% Similarity=0.029 Sum_probs=103.5
Q ss_pred CCCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHH-----HH--HcCCCCEEEEeccccccCCCCcCCCC
Q 022962 120 NSNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHA-----VS--LTQLLNVQIVRGRAETLGKDVSFREQ 192 (289)
Q Consensus 120 ~~~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~-----~~--~~~l~ni~~~~~d~~~~~~~~~~~~~ 192 (289)
.++.+||+||||+|.....+.+..+..+|++||+++++++.|++. .. .+.-++++++.+|+.++-.. ..++
T Consensus 149 ~~PkrVLIIGgGdG~tlrelLk~~~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~--~~~~ 226 (374)
T PRK01581 149 IDPKRVLILGGGDGLALREVLKYETVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSS--PSSL 226 (374)
T ss_pred CCCCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHHh--cCCC
Confidence 346799999999999777766544457999999999999999962 11 12234799999999885332 2368
Q ss_pred ceEEEEcCccc---------HHHHHHHHccccccCeEEEEEEcCCc--HHHHHHHHHHHHHhCCeEeEEeeeecCCCCCc
Q 022962 193 YDVAVARAVAE---------MRILAEYCLPLVRVGGLFVAAKGHDP--QEEVKNSERAVQLMGASLLQLCSVESQSPFGQ 261 (289)
Q Consensus 193 fD~V~sn~~~~---------~~~ll~~~~~~LkpgG~l~~~~g~~~--~~ei~~~~~~l~~~g~~~~~~~~~~~~~~~~~ 261 (289)
||+|++....+ -.++++.+.+.|+|||.+++-.+... ...+..+.+.++..|+........ .|...+.
T Consensus 227 YDVIIvDl~DP~~~~~~~LyT~EFy~~~~~~LkPgGV~V~Qs~sp~~~~~~~~~i~~tL~~af~~v~~y~t~-vPsyg~~ 305 (374)
T PRK01581 227 YDVIIIDFPDPATELLSTLYTSELFARIATFLTEDGAFVCQSNSPADAPLVYWSIGNTIEHAGLTVKSYHTI-VPSFGTD 305 (374)
T ss_pred ccEEEEcCCCccccchhhhhHHHHHHHHHHhcCCCcEEEEecCChhhhHHHHHHHHHHHHHhCCceEEEEEe-cCCCCCc
Confidence 99999984221 26789999999999999987654221 222345667788888876654432 3444444
Q ss_pred eEEEEEEec
Q 022962 262 RTAVVCLKS 270 (289)
Q Consensus 262 r~lv~~~k~ 270 (289)
+..++..+.
T Consensus 306 WgF~~as~~ 314 (374)
T PRK01581 306 WGFHIAANS 314 (374)
T ss_pred eEEEEEeCC
Confidence 666666653
No 138
>PLN02366 spermidine synthase
Probab=99.31 E-value=9.4e-11 Score=107.27 Aligned_cols=149 Identities=13% Similarity=0.054 Sum_probs=104.7
Q ss_pred CCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHc--CC--CCEEEEeccccccCCCCcCCCCceEE
Q 022962 121 SNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLT--QL--LNVQIVRGRAETLGKDVSFREQYDVA 196 (289)
Q Consensus 121 ~~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~--~l--~ni~~~~~d~~~~~~~~~~~~~fD~V 196 (289)
++.+|||||||.|..+..+++..+..+|+.||+++.+++.+++..... ++ ++++++.+|...+-.. ..+++||+|
T Consensus 91 ~pkrVLiIGgG~G~~~rellk~~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~-~~~~~yDvI 169 (308)
T PLN02366 91 NPKKVLVVGGGDGGVLREIARHSSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKN-APEGTYDAI 169 (308)
T ss_pred CCCeEEEEcCCccHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHhh-ccCCCCCEE
Confidence 367999999999999988886533479999999999999999976543 22 3699999998665321 013679999
Q ss_pred EEcCcc--------cHHHHHHHHccccccCeEEEEEEcC--CcHHHHHHHHHHHHHhCCeEeEEeeeecCCC-CCceEEE
Q 022962 197 VARAVA--------EMRILAEYCLPLVRVGGLFVAAKGH--DPQEEVKNSERAVQLMGASLLQLCSVESQSP-FGQRTAV 265 (289)
Q Consensus 197 ~sn~~~--------~~~~ll~~~~~~LkpgG~l~~~~g~--~~~~ei~~~~~~l~~~g~~~~~~~~~~~~~~-~~~r~lv 265 (289)
++.... --..+++.+.+.|+|||.++...+. ...+.+..+.+.++......+.......|.- .+.+..+
T Consensus 170 i~D~~dp~~~~~~L~t~ef~~~~~~~L~pgGvlv~q~~s~~~~~~~~~~i~~tl~~~F~~~v~~~~~~vPsy~~g~w~f~ 249 (308)
T PLN02366 170 IVDSSDPVGPAQELFEKPFFESVARALRPGGVVCTQAESMWLHMDLIEDLIAICRETFKGSVNYAWTTVPTYPSGVIGFV 249 (308)
T ss_pred EEcCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEECcCCcccchHHHHHHHHHHHHHCCCceeEEEecCCCcCCCceEEE
Confidence 997532 1357899999999999999864432 2345566677777776533443322223433 3567777
Q ss_pred EEEec
Q 022962 266 VCLKS 270 (289)
Q Consensus 266 ~~~k~ 270 (289)
++.+.
T Consensus 250 ~as~~ 254 (308)
T PLN02366 250 LCSKE 254 (308)
T ss_pred EEECC
Confidence 77765
No 139
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.31 E-value=1.9e-11 Score=118.48 Aligned_cols=99 Identities=18% Similarity=0.167 Sum_probs=77.5
Q ss_pred CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCcCCCCceEEEEcCc
Q 022962 122 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARAV 201 (289)
Q Consensus 122 ~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~~~~~fD~V~sn~~ 201 (289)
+.+|||||||+|..+..++.. ..+|+|+|+++++++.+++... ...+++++++|+.+...+ ..+++||+|+++..
T Consensus 38 ~~~vLDlGcG~G~~~~~la~~--~~~v~giD~s~~~l~~a~~~~~--~~~~i~~~~~d~~~~~~~-~~~~~fD~I~~~~~ 112 (475)
T PLN02336 38 GKSVLELGAGIGRFTGELAKK--AGQVIALDFIESVIKKNESING--HYKNVKFMCADVTSPDLN-ISDGSVDLIFSNWL 112 (475)
T ss_pred CCEEEEeCCCcCHHHHHHHhh--CCEEEEEeCCHHHHHHHHHHhc--cCCceEEEEecccccccC-CCCCCEEEEehhhh
Confidence 669999999999999999976 4699999999999987655221 235799999999643211 11368999999852
Q ss_pred c------cHHHHHHHHccccccCeEEEEEE
Q 022962 202 A------EMRILAEYCLPLVRVGGLFVAAK 225 (289)
Q Consensus 202 ~------~~~~ll~~~~~~LkpgG~l~~~~ 225 (289)
. ....+++++.++|||||++++..
T Consensus 113 l~~l~~~~~~~~l~~~~r~Lk~gG~l~~~d 142 (475)
T PLN02336 113 LMYLSDKEVENLAERMVKWLKVGGYIFFRE 142 (475)
T ss_pred HHhCCHHHHHHHHHHHHHhcCCCeEEEEEe
Confidence 2 35789999999999999998753
No 140
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=99.30 E-value=8.2e-11 Score=106.00 Aligned_cols=145 Identities=15% Similarity=0.088 Sum_probs=102.9
Q ss_pred CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcC----CCCEEEEeccccccCCCCcCCCCceEEE
Q 022962 122 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQ----LLNVQIVRGRAETLGKDVSFREQYDVAV 197 (289)
Q Consensus 122 ~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~----l~ni~~~~~d~~~~~~~~~~~~~fD~V~ 197 (289)
+.+|||||||+|..+..++...+..+|+++|+++++++.++++....+ ..+++++.+|..++-.. ..++||+|+
T Consensus 73 p~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~--~~~~yDvIi 150 (270)
T TIGR00417 73 PKHVLVIGGGDGGVLREVLKHKSVEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLAD--TENTFDVII 150 (270)
T ss_pred CCEEEEEcCCchHHHHHHHhCCCcceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHh--CCCCccEEE
Confidence 459999999999988887765456799999999999999999765532 23688888887664221 136899999
Q ss_pred EcCcc------c--HHHHHHHHccccccCeEEEEEEcC--CcHHHHHHHHHHHHHhCCeEeEEeeeecCCC-CCceEEEE
Q 022962 198 ARAVA------E--MRILAEYCLPLVRVGGLFVAAKGH--DPQEEVKNSERAVQLMGASLLQLCSVESQSP-FGQRTAVV 266 (289)
Q Consensus 198 sn~~~------~--~~~ll~~~~~~LkpgG~l~~~~g~--~~~~ei~~~~~~l~~~g~~~~~~~~~~~~~~-~~~r~lv~ 266 (289)
++... . ...+++.+.+.|+|||.+++..+. ...+.+..+.+.++.. |..+.......|.- .+.+..++
T Consensus 151 ~D~~~~~~~~~~l~~~ef~~~~~~~L~pgG~lv~~~~~~~~~~~~~~~~~~tl~~~-F~~v~~~~~~vp~~~~g~~~~~~ 229 (270)
T TIGR00417 151 VDSTDPVGPAETLFTKEFYELLKKALNEDGIFVAQSESPWIQLELITDLKRDVKEA-FPITEYYTANIPTYPSGLWTFTI 229 (270)
T ss_pred EeCCCCCCcccchhHHHHHHHHHHHhCCCcEEEEcCCCcccCHHHHHHHHHHHHHH-CCCeEEEEEEcCccccchhEEEE
Confidence 97531 1 468889999999999999986432 2345555666666666 54444443333433 35677777
Q ss_pred EEe
Q 022962 267 CLK 269 (289)
Q Consensus 267 ~~k 269 (289)
+.+
T Consensus 230 as~ 232 (270)
T TIGR00417 230 GSK 232 (270)
T ss_pred EEC
Confidence 776
No 141
>PRK06202 hypothetical protein; Provisional
Probab=99.29 E-value=1.8e-11 Score=107.66 Aligned_cols=89 Identities=21% Similarity=0.278 Sum_probs=68.8
Q ss_pred CCeEEEEcCCCChHHHHHHHH----CCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCcCCCCceEEE
Q 022962 122 NLKLVDVGTGAGLPGLVLAIA----CPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAV 197 (289)
Q Consensus 122 ~~~VLDiGcG~G~~~l~la~~----~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~~~~~fD~V~ 197 (289)
+.+|||||||+|.++..++.. .++.+|+|+|+|+.|++.|+++.... ++++...+..+++.. +++||+|+
T Consensus 61 ~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~~---~~~~~~~~~~~l~~~---~~~fD~V~ 134 (232)
T PRK06202 61 PLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRRP---GVTFRQAVSDELVAE---GERFDVVT 134 (232)
T ss_pred CcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhccccC---CCeEEEEeccccccc---CCCccEEE
Confidence 679999999999999888754 24579999999999999998865433 466666666665432 37899999
Q ss_pred EcC----ccc--HHHHHHHHccccc
Q 022962 198 ARA----VAE--MRILAEYCLPLVR 216 (289)
Q Consensus 198 sn~----~~~--~~~ll~~~~~~Lk 216 (289)
++. +.+ ...+++++.++++
T Consensus 135 ~~~~lhh~~d~~~~~~l~~~~r~~~ 159 (232)
T PRK06202 135 SNHFLHHLDDAEVVRLLADSAALAR 159 (232)
T ss_pred ECCeeecCChHHHHHHHHHHHHhcC
Confidence 994 222 4679999999987
No 142
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=99.28 E-value=2.7e-10 Score=95.40 Aligned_cols=98 Identities=15% Similarity=0.081 Sum_probs=73.9
Q ss_pred CCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCcCCCCceEEEEcC
Q 022962 121 SNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARA 200 (289)
Q Consensus 121 ~~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~~~~~fD~V~sn~ 200 (289)
++.+|||||||+|.++..++.. +.+|+++|+|+.+++.++++... .++++++++|+.++... +.+||.|++|.
T Consensus 13 ~~~~vLEiG~G~G~lt~~l~~~--~~~v~~vE~~~~~~~~~~~~~~~--~~~v~ii~~D~~~~~~~---~~~~d~vi~n~ 85 (169)
T smart00650 13 PGDTVLEIGPGKGALTEELLER--AARVTAIEIDPRLAPRLREKFAA--ADNLTVIHGDALKFDLP---KLQPYKVVGNL 85 (169)
T ss_pred CcCEEEEECCCccHHHHHHHhc--CCeEEEEECCHHHHHHHHHHhcc--CCCEEEEECchhcCCcc---ccCCCEEEECC
Confidence 4679999999999999999876 57999999999999999988754 34799999999987643 24699999994
Q ss_pred ccc-HHHHHHHHcc--ccccCeEEEEEE
Q 022962 201 VAE-MRILAEYCLP--LVRVGGLFVAAK 225 (289)
Q Consensus 201 ~~~-~~~ll~~~~~--~LkpgG~l~~~~ 225 (289)
.-. ...++..+.. .+.++|.+++.+
T Consensus 86 Py~~~~~~i~~~l~~~~~~~~~~l~~q~ 113 (169)
T smart00650 86 PYNISTPILFKLLEEPPAFRDAVLMVQK 113 (169)
T ss_pred CcccHHHHHHHHHhcCCCcceEEEEEEH
Confidence 211 1233332222 245888888764
No 143
>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]
Probab=99.27 E-value=1.5e-10 Score=99.04 Aligned_cols=115 Identities=12% Similarity=0.062 Sum_probs=86.2
Q ss_pred CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccc-cCCCCcCCCCceEEEEc-
Q 022962 122 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAET-LGKDVSFREQYDVAVAR- 199 (289)
Q Consensus 122 ~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~-~~~~~~~~~~fD~V~sn- 199 (289)
..-|||||||||..+-.|.. ++...+|+|+|+.|++.|.+ ++.. -.++.+|+-+ +++. +++||.++|-
T Consensus 51 ~~~iLDIGCGsGLSg~vL~~--~Gh~wiGvDiSpsML~~a~~--~e~e---gdlil~DMG~Glpfr---pGtFDg~ISIS 120 (270)
T KOG1541|consen 51 SGLILDIGCGSGLSGSVLSD--SGHQWIGVDISPSMLEQAVE--RELE---GDLILCDMGEGLPFR---PGTFDGVISIS 120 (270)
T ss_pred CcEEEEeccCCCcchheecc--CCceEEeecCCHHHHHHHHH--hhhh---cCeeeeecCCCCCCC---CCccceEEEee
Confidence 67899999999998877763 46889999999999999987 3322 2456667754 4443 4899999974
Q ss_pred -------Cc-------ccHHHHHHHHccccccCeEEEEEEcCCcHHHHHHHHHHHHHhCCe
Q 022962 200 -------AV-------AEMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGAS 246 (289)
Q Consensus 200 -------~~-------~~~~~ll~~~~~~LkpgG~l~~~~g~~~~~ei~~~~~~l~~~g~~ 246 (289)
+. ..+..|+..++.+|++|++.++-.-+.....+..+++...++||.
T Consensus 121 AvQWLcnA~~s~~~P~~Rl~~FF~tLy~~l~rg~raV~QfYpen~~q~d~i~~~a~~aGF~ 181 (270)
T KOG1541|consen 121 AVQWLCNADKSLHVPKKRLLRFFGTLYSCLKRGARAVLQFYPENEAQIDMIMQQAMKAGFG 181 (270)
T ss_pred eeeeecccCccccChHHHHHHHhhhhhhhhccCceeEEEecccchHHHHHHHHHHHhhccC
Confidence 21 135677888999999999999876566666666677667778875
No 144
>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase. This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.
Probab=99.26 E-value=1.9e-10 Score=107.41 Aligned_cols=138 Identities=14% Similarity=0.080 Sum_probs=100.3
Q ss_pred CeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCC-c---C---------
Q 022962 123 LKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDV-S---F--------- 189 (289)
Q Consensus 123 ~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~-~---~--------- 189 (289)
.+|||+|||+|.+++.++... .+|+|||+++++++.|++|++.++++|++++++|++++.... . +
T Consensus 199 ~~vlDl~~G~G~~sl~la~~~--~~v~~vE~~~~av~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~~~~ 276 (353)
T TIGR02143 199 GDLLELYCGNGNFSLALAQNF--RRVLATEIAKPSVNAAQYNIAANNIDNVQIIRMSAEEFTQAMNGVREFRRLKGIDLK 276 (353)
T ss_pred CcEEEEeccccHHHHHHHHhC--CEEEEEECCHHHHHHHHHHHHHcCCCcEEEEEcCHHHHHHHHhhccccccccccccc
Confidence 479999999999999999774 599999999999999999999999989999999998753210 0 0
Q ss_pred CCCceEEEEcCcc--cHHHHHHHHccccccCeEEEEEEcCCcHHHHHHHHHHHHHhCCeEeEEeeee-cCCCCCceEEEE
Q 022962 190 REQYDVAVARAVA--EMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLLQLCSVE-SQSPFGQRTAVV 266 (289)
Q Consensus 190 ~~~fD~V~sn~~~--~~~~ll~~~~~~LkpgG~l~~~~g~~~~~ei~~~~~~l~~~g~~~~~~~~~~-~~~~~~~r~lv~ 266 (289)
...||+|+.+... -.+.+++.+.+ |++.+|+...+ ..-..++.. |. .++++.++..++ +|....-..+++
T Consensus 277 ~~~~d~v~lDPPR~G~~~~~l~~l~~---~~~ivYvsC~p--~tlaRDl~~-L~-~~Y~l~~v~~~DmFP~T~HvE~v~l 349 (353)
T TIGR02143 277 SYNCSTIFVDPPRAGLDPDTCKLVQA---YERILYISCNP--ETLKANLEQ-LS-ETHRVERFALFDQFPYTHHMECGVL 349 (353)
T ss_pred cCCCCEEEECCCCCCCcHHHHHHHHc---CCcEEEEEcCH--HHHHHHHHH-Hh-cCcEEEEEEEcccCCCCCcEEEEEE
Confidence 1248999998532 13455555544 78888887654 222333332 32 359999999887 566666666766
Q ss_pred EEe
Q 022962 267 CLK 269 (289)
Q Consensus 267 ~~k 269 (289)
+++
T Consensus 350 L~r 352 (353)
T TIGR02143 350 LER 352 (353)
T ss_pred EEe
Confidence 654
No 145
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=99.23 E-value=4.6e-11 Score=112.46 Aligned_cols=100 Identities=19% Similarity=0.271 Sum_probs=86.8
Q ss_pred CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCcCCCCceEEEEcCc
Q 022962 122 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARAV 201 (289)
Q Consensus 122 ~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~~~~~fD~V~sn~~ 201 (289)
+.+|||++||+|..++.+|...+..+|+++|+|+.+++.+++|++.++++++++.++|+..+... .++||+|+.+..
T Consensus 58 ~~~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din~~Av~~a~~N~~~N~~~~~~v~~~Da~~~l~~---~~~fD~V~lDP~ 134 (382)
T PRK04338 58 RESVLDALSASGIRGIRYALETGVEKVTLNDINPDAVELIKKNLELNGLENEKVFNKDANALLHE---ERKFDVVDIDPF 134 (382)
T ss_pred CCEEEECCCcccHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCceEEEhhhHHHHHhh---cCCCCEEEECCC
Confidence 35899999999999999998776669999999999999999999999998899999999875321 257999999987
Q ss_pred ccHHHHHHHHccccccCeEEEEE
Q 022962 202 AEMRILAEYCLPLVRVGGLFVAA 224 (289)
Q Consensus 202 ~~~~~ll~~~~~~LkpgG~l~~~ 224 (289)
.....+++.+.+.+++||.+++.
T Consensus 135 Gs~~~~l~~al~~~~~~gilyvS 157 (382)
T PRK04338 135 GSPAPFLDSAIRSVKRGGLLCVT 157 (382)
T ss_pred CCcHHHHHHHHHHhcCCCEEEEE
Confidence 66678888877889999999975
No 146
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=99.22 E-value=8.4e-11 Score=107.55 Aligned_cols=103 Identities=13% Similarity=0.010 Sum_probs=75.5
Q ss_pred CCeEEEEcCCCChHHHHHHHHCC-CCEEEEEeCChHHHHHHHHHHHHcCC-CCEEEEecccccc-CCCCcCC-CCceEEE
Q 022962 122 NLKLVDVGTGAGLPGLVLAIACP-DWKVTLLESMNKRCVFLEHAVSLTQL-LNVQIVRGRAETL-GKDVSFR-EQYDVAV 197 (289)
Q Consensus 122 ~~~VLDiGcG~G~~~l~la~~~p-~~~V~~iD~s~~~l~~a~~~~~~~~l-~ni~~~~~d~~~~-~~~~~~~-~~fD~V~ 197 (289)
+.+|||+|||+|..+..|+...+ ..+|+++|+|++|++.++++...... -+|.++++|+.+. ....... +...+++
T Consensus 64 ~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~p~~~v~~i~gD~~~~~~~~~~~~~~~~~~~~ 143 (301)
T TIGR03438 64 GCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADYPQLEVHGICADFTQPLALPPEPAAGRRLGFF 143 (301)
T ss_pred CCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhCCCceEEEEEEcccchhhhhcccccCCeEEEE
Confidence 67899999999999999988765 58999999999999999988765321 2478889999763 2211111 1223333
Q ss_pred EcC------cccHHHHHHHHccccccCeEEEEE
Q 022962 198 ARA------VAEMRILAEYCLPLVRVGGLFVAA 224 (289)
Q Consensus 198 sn~------~~~~~~ll~~~~~~LkpgG~l~~~ 224 (289)
+.. ..+...+++.+.+.|+|||.|++-
T Consensus 144 ~gs~~~~~~~~e~~~~L~~i~~~L~pgG~~lig 176 (301)
T TIGR03438 144 PGSTIGNFTPEEAVAFLRRIRQLLGPGGGLLIG 176 (301)
T ss_pred ecccccCCCHHHHHHHHHHHHHhcCCCCEEEEe
Confidence 321 234678999999999999999864
No 147
>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]
Probab=99.22 E-value=5.7e-11 Score=108.16 Aligned_cols=97 Identities=22% Similarity=0.307 Sum_probs=80.1
Q ss_pred CCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCC-EEEEeccccccCCCCcCCCCceEEEEc
Q 022962 121 SNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLN-VQIVRGRAETLGKDVSFREQYDVAVAR 199 (289)
Q Consensus 121 ~~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~n-i~~~~~d~~~~~~~~~~~~~fD~V~sn 199 (289)
++..|||+|||||++++.-|++. ..+|+|||-|.-+ +.|++.++.+++++ |+++++.++++..+ .++.|+|+|-
T Consensus 60 ~dK~VlDVGcGtGILS~F~akAG-A~~V~aVe~S~ia-~~a~~iv~~N~~~~ii~vi~gkvEdi~LP---~eKVDiIvSE 134 (346)
T KOG1499|consen 60 KDKTVLDVGCGTGILSMFAAKAG-ARKVYAVEASSIA-DFARKIVKDNGLEDVITVIKGKVEDIELP---VEKVDIIVSE 134 (346)
T ss_pred CCCEEEEcCCCccHHHHHHHHhC-cceEEEEechHHH-HHHHHHHHhcCccceEEEeecceEEEecC---ccceeEEeeh
Confidence 37899999999999999988774 7899999998766 99999999999987 99999999998654 3799999997
Q ss_pred Ccc-------cHHHHHHHHccccccCeEEE
Q 022962 200 AVA-------EMRILAEYCLPLVRVGGLFV 222 (289)
Q Consensus 200 ~~~-------~~~~ll~~~~~~LkpgG~l~ 222 (289)
-+. -+..++-.=-++|+|||.++
T Consensus 135 WMGy~Ll~EsMldsVl~ARdkwL~~~G~i~ 164 (346)
T KOG1499|consen 135 WMGYFLLYESMLDSVLYARDKWLKEGGLIY 164 (346)
T ss_pred hhhHHHHHhhhhhhhhhhhhhccCCCceEc
Confidence 322 23444444457999999987
No 148
>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=99.21 E-value=4.8e-10 Score=93.20 Aligned_cols=136 Identities=14% Similarity=0.103 Sum_probs=102.1
Q ss_pred CCeEEEEcCCCChHHHHHHHHC-CCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCcCCCCceEEEEcC
Q 022962 122 NLKLVDVGTGAGLPGLVLAIAC-PDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARA 200 (289)
Q Consensus 122 ~~~VLDiGcG~G~~~l~la~~~-p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~~~~~fD~V~sn~ 200 (289)
..-++|||||||..+-.|++.. |.....++|+|+++++...+.++.++. ++.+++.|+.+.-.. ++.|+++.|.
T Consensus 44 ~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n~~-~~~~V~tdl~~~l~~----~~VDvLvfNP 118 (209)
T KOG3191|consen 44 PEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCNRV-HIDVVRTDLLSGLRN----ESVDVLVFNP 118 (209)
T ss_pred ceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhcCC-ccceeehhHHhhhcc----CCccEEEECC
Confidence 4579999999999998888764 678899999999999999999998887 588999998874332 7899999992
Q ss_pred -------------------------cccHHHHHHHHccccccCeEEEEEEc-CCcHHHHHHHHHHHHHhCCeEeEEeeee
Q 022962 201 -------------------------VAEMRILAEYCLPLVRVGGLFVAAKG-HDPQEEVKNSERAVQLMGASLLQLCSVE 254 (289)
Q Consensus 201 -------------------------~~~~~~ll~~~~~~LkpgG~l~~~~g-~~~~~ei~~~~~~l~~~g~~~~~~~~~~ 254 (289)
..-...++.++..+|.|.|.|++..- .+..+|+ .+.++..||.......
T Consensus 119 PYVpt~~~~i~~~~i~~a~aGG~~Gr~v~d~ll~~v~~iLSp~Gv~Ylv~~~~N~p~ei---~k~l~~~g~~~~~~~~-- 193 (209)
T KOG3191|consen 119 PYVPTSDEEIGDEGIASAWAGGKDGREVTDRLLPQVPDILSPRGVFYLVALRANKPKEI---LKILEKKGYGVRIAMQ-- 193 (209)
T ss_pred CcCcCCcccchhHHHHHHHhcCcchHHHHHHHHhhhhhhcCcCceEEeeehhhcCHHHH---HHHHhhcccceeEEEE--
Confidence 11257888999999999999997642 3445554 4456688886554432
Q ss_pred cCCCCCceEEEEEEe
Q 022962 255 SQSPFGQRTAVVCLK 269 (289)
Q Consensus 255 ~~~~~~~r~lv~~~k 269 (289)
...+..++.+++-
T Consensus 194 --Rk~~~E~l~ilkf 206 (209)
T KOG3191|consen 194 --RKAGGETLSILKF 206 (209)
T ss_pred --EecCCceEEEEEE
Confidence 2334555555543
No 149
>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family. Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.
Probab=99.20 E-value=8.4e-11 Score=101.02 Aligned_cols=100 Identities=16% Similarity=0.259 Sum_probs=77.5
Q ss_pred CCCCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCC-EEEEeccccccCCCCcCCCCceEEE
Q 022962 119 CNSNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLN-VQIVRGRAETLGKDVSFREQYDVAV 197 (289)
Q Consensus 119 ~~~~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~n-i~~~~~d~~~~~~~~~~~~~fD~V~ 197 (289)
..++.+|+|+.||-|.+++.+|+..+...|+|+|+++.+++.+++|++.+++++ |.++++|..++.. .+.||-|+
T Consensus 99 v~~~e~VlD~faGIG~f~l~~ak~~~~~~V~A~d~Np~a~~~L~~Ni~lNkv~~~i~~~~~D~~~~~~----~~~~drvi 174 (200)
T PF02475_consen 99 VKPGEVVLDMFAGIGPFSLPIAKHGKAKRVYAVDLNPDAVEYLKENIRLNKVENRIEVINGDAREFLP----EGKFDRVI 174 (200)
T ss_dssp --TT-EEEETT-TTTTTHHHHHHHT-SSEEEEEES-HHHHHHHHHHHHHTT-TTTEEEEES-GGG-------TT-EEEEE
T ss_pred CCcceEEEEccCCccHHHHHHhhhcCccEEEEecCCHHHHHHHHHHHHHcCCCCeEEEEcCCHHHhcC----ccccCEEE
Confidence 456899999999999999999987677899999999999999999999999975 8999999998754 37899999
Q ss_pred EcCcccHHHHHHHHccccccCeEEE
Q 022962 198 ARAVAEMRILAEYCLPLVRVGGLFV 222 (289)
Q Consensus 198 sn~~~~~~~ll~~~~~~LkpgG~l~ 222 (289)
++-...-..++..+..++++||.+-
T Consensus 175 m~lp~~~~~fl~~~~~~~~~~g~ih 199 (200)
T PF02475_consen 175 MNLPESSLEFLDAALSLLKEGGIIH 199 (200)
T ss_dssp E--TSSGGGGHHHHHHHEEEEEEEE
T ss_pred ECChHHHHHHHHHHHHHhcCCcEEE
Confidence 9976666678888899999999864
No 150
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=99.20 E-value=1.8e-10 Score=98.39 Aligned_cols=105 Identities=21% Similarity=0.128 Sum_probs=79.5
Q ss_pred CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCC-CEEEEeccccccCCCC-cCCCCceEEEEc
Q 022962 122 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLL-NVQIVRGRAETLGKDV-SFREQYDVAVAR 199 (289)
Q Consensus 122 ~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~-ni~~~~~d~~~~~~~~-~~~~~fD~V~sn 199 (289)
+.+|||++||+|.+|+.++.. ...+|++||.++.+++.+++|++.++++ +++++++|+.+..... .....||+|+..
T Consensus 50 g~~vLDLfaGsG~lglea~sr-ga~~v~~vE~~~~a~~~~~~N~~~~~~~~~~~~~~~D~~~~l~~~~~~~~~~dvv~~D 128 (189)
T TIGR00095 50 GAHLLDVFAGSGLLGEEALSR-GAKVAFLEEDDRKANQTLKENLALLKSGEQAEVVRNSALRALKFLAKKPTFDNVIYLD 128 (189)
T ss_pred CCEEEEecCCCcHHHHHHHhC-CCCEEEEEeCCHHHHHHHHHHHHHhCCcccEEEEehhHHHHHHHhhccCCCceEEEEC
Confidence 779999999999999998865 3458999999999999999999999986 6999999996542110 011247888887
Q ss_pred C---cccHHHHHHHH--ccccccCeEEEEEEcC
Q 022962 200 A---VAEMRILAEYC--LPLVRVGGLFVAAKGH 227 (289)
Q Consensus 200 ~---~~~~~~ll~~~--~~~LkpgG~l~~~~g~ 227 (289)
+ ......+++.+ ..+|+++|.+++++..
T Consensus 129 PPy~~~~~~~~l~~l~~~~~l~~~~iiv~E~~~ 161 (189)
T TIGR00095 129 PPFFNGALQALLELCENNWILEDTVLIVVEEDR 161 (189)
T ss_pred cCCCCCcHHHHHHHHHHCCCCCCCeEEEEEecC
Confidence 4 22234444433 4589999999988754
No 151
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=99.18 E-value=3.2e-10 Score=97.02 Aligned_cols=121 Identities=12% Similarity=0.122 Sum_probs=85.0
Q ss_pred CCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccc-cCCCCcCCCCceEEEEc
Q 022962 121 SNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAET-LGKDVSFREQYDVAVAR 199 (289)
Q Consensus 121 ~~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~-~~~~~~~~~~fD~V~sn 199 (289)
++.+|||+|||+|.++..++.. ....++|+|+|+++++.++. .+++++++|+.+ +.. ..+++||+|+++
T Consensus 13 ~~~~iLDiGcG~G~~~~~l~~~-~~~~~~giD~s~~~i~~a~~-------~~~~~~~~d~~~~l~~--~~~~sfD~Vi~~ 82 (194)
T TIGR02081 13 PGSRVLDLGCGDGELLALLRDE-KQVRGYGIEIDQDGVLACVA-------RGVNVIQGDLDEGLEA--FPDKSFDYVILS 82 (194)
T ss_pred CCCEEEEeCCCCCHHHHHHHhc-cCCcEEEEeCCHHHHHHHHH-------cCCeEEEEEhhhcccc--cCCCCcCEEEEh
Confidence 4679999999999998888755 35688999999999888754 247788888876 321 113689999998
Q ss_pred C----cccHHHHHHHHccccccCeEEEEEEcC---------------------------C----cHHHHHHHHHHHHHhC
Q 022962 200 A----VAEMRILAEYCLPLVRVGGLFVAAKGH---------------------------D----PQEEVKNSERAVQLMG 244 (289)
Q Consensus 200 ~----~~~~~~ll~~~~~~LkpgG~l~~~~g~---------------------------~----~~~ei~~~~~~l~~~g 244 (289)
. +.+...+++++.+.++++ ++..+. + ......++.+.++.+|
T Consensus 83 ~~l~~~~d~~~~l~e~~r~~~~~---ii~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ll~~~G 159 (194)
T TIGR02081 83 QTLQATRNPEEILDEMLRVGRHA---IVSFPNFGYWRVRWSILTKGRMPVTGELPYDWYNTPNIHFCTIADFEDLCGELN 159 (194)
T ss_pred hHhHcCcCHHHHHHHHHHhCCeE---EEEcCChhHHHHHHHHHhCCccccCCCCCccccCCCCcccCcHHHHHHHHHHCC
Confidence 4 456778888887776543 221100 0 0112345667788999
Q ss_pred CeEeEEeeee
Q 022962 245 ASLLQLCSVE 254 (289)
Q Consensus 245 ~~~~~~~~~~ 254 (289)
|++++.....
T Consensus 160 f~v~~~~~~~ 169 (194)
T TIGR02081 160 LRILDRAAFD 169 (194)
T ss_pred CEEEEEEEec
Confidence 9998887654
No 152
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=99.18 E-value=1.2e-10 Score=103.24 Aligned_cols=102 Identities=16% Similarity=0.202 Sum_probs=86.3
Q ss_pred CCeEEEEcCCCChHHHHHHHHC-CCCEEEEEeCChHHHHHHHHHHHHcCCC-CEEEEeccccccCCCC----cCCCCceE
Q 022962 122 NLKLVDVGTGAGLPGLVLAIAC-PDWKVTLLESMNKRCVFLEHAVSLTQLL-NVQIVRGRAETLGKDV----SFREQYDV 195 (289)
Q Consensus 122 ~~~VLDiGcG~G~~~l~la~~~-p~~~V~~iD~s~~~l~~a~~~~~~~~l~-ni~~~~~d~~~~~~~~----~~~~~fD~ 195 (289)
..+||+|||++|+.++.+|... ++++|+.+|.+++..+.|+++.+..|+. +|+++.+++.+.-... ...++||+
T Consensus 80 ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag~~~~I~~~~G~a~e~L~~l~~~~~~~~~fD~ 159 (247)
T PLN02589 80 AKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDQMIEDGKYHGTFDF 159 (247)
T ss_pred CCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeccHHHHHHHHHhccccCCcccE
Confidence 6799999999999999999876 4789999999999999999999999975 6999999997742210 01268999
Q ss_pred EEEcCc-ccHHHHHHHHccccccCeEEEE
Q 022962 196 AVARAV-AEMRILAEYCLPLVRVGGLFVA 223 (289)
Q Consensus 196 V~sn~~-~~~~~ll~~~~~~LkpgG~l~~ 223 (289)
|+..+- ..+...++.+.++|+|||.+++
T Consensus 160 iFiDadK~~Y~~y~~~~l~ll~~GGviv~ 188 (247)
T PLN02589 160 IFVDADKDNYINYHKRLIDLVKVGGVIGY 188 (247)
T ss_pred EEecCCHHHhHHHHHHHHHhcCCCeEEEE
Confidence 999864 4678888999999999999885
No 153
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=99.16 E-value=2.2e-11 Score=104.54 Aligned_cols=141 Identities=20% Similarity=0.221 Sum_probs=94.6
Q ss_pred CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCcCCCCceEEEEcCc
Q 022962 122 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARAV 201 (289)
Q Consensus 122 ~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~~~~~fD~V~sn~~ 201 (289)
=.++||+|||||..|..|-.. ..+++|+|+|+.|++.|.+. |+ -=+..++++..+... ..++.||+|++..+
T Consensus 126 F~~~lDLGCGTGL~G~~lR~~--a~~ltGvDiS~nMl~kA~eK----g~-YD~L~~Aea~~Fl~~-~~~er~DLi~AaDV 197 (287)
T COG4976 126 FRRMLDLGCGTGLTGEALRDM--ADRLTGVDISENMLAKAHEK----GL-YDTLYVAEAVLFLED-LTQERFDLIVAADV 197 (287)
T ss_pred cceeeecccCcCcccHhHHHH--HhhccCCchhHHHHHHHHhc----cc-hHHHHHHHHHHHhhh-ccCCcccchhhhhH
Confidence 358999999999999887654 46899999999999998873 21 112344555543321 12478999998753
Q ss_pred ----ccHHHHHHHHccccccCeEEEEEE--cC-C------cHHHH----HHHHHHHHHhCCeEeEEeeeecCCCCC---c
Q 022962 202 ----AEMRILAEYCLPLVRVGGLFVAAK--GH-D------PQEEV----KNSERAVQLMGASLLQLCSVESQSPFG---Q 261 (289)
Q Consensus 202 ----~~~~~ll~~~~~~LkpgG~l~~~~--g~-~------~~~ei----~~~~~~l~~~g~~~~~~~~~~~~~~~~---~ 261 (289)
..++.++..+...|+|||.|.|.. .. + ..... .-+...+...|++++++.....-...+ .
T Consensus 198 l~YlG~Le~~~~~aa~~L~~gGlfaFSvE~l~~~~~f~l~ps~RyAH~~~YVr~~l~~~Gl~~i~~~~ttiR~d~g~pv~ 277 (287)
T COG4976 198 LPYLGALEGLFAGAAGLLAPGGLFAFSVETLPDDGGFVLGPSQRYAHSESYVRALLAASGLEVIAIEDTTIRRDAGEPVP 277 (287)
T ss_pred HHhhcchhhHHHHHHHhcCCCceEEEEecccCCCCCeecchhhhhccchHHHHHHHHhcCceEEEeecccchhhcCCCCC
Confidence 467899999999999999999854 11 1 11111 224456778999999887654322222 2
Q ss_pred eEEEEEEec
Q 022962 262 RTAVVCLKS 270 (289)
Q Consensus 262 r~lv~~~k~ 270 (289)
-.+++.+|+
T Consensus 278 G~L~iark~ 286 (287)
T COG4976 278 GILVIARKK 286 (287)
T ss_pred CceEEEecC
Confidence 346666654
No 154
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=99.14 E-value=2.7e-10 Score=99.69 Aligned_cols=104 Identities=13% Similarity=0.064 Sum_probs=89.7
Q ss_pred CeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCcCCCCceEEEEcCcc
Q 022962 123 LKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARAVA 202 (289)
Q Consensus 123 ~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~~~~~fD~V~sn~~~ 202 (289)
..+||||||.|...+.+|+..|+..++|||+....+..|...+.+.+++|+.+++.|+..+......+++.|-|..+-..
T Consensus 50 pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v~~~l~k~~~~~l~Nlri~~~DA~~~l~~~~~~~sl~~I~i~FPD 129 (227)
T COG0220 50 PIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVAKALKKIKELGLKNLRLLCGDAVEVLDYLIPDGSLDKIYINFPD 129 (227)
T ss_pred cEEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHhcCCCCCeeEEEEECCC
Confidence 47999999999999999999999999999999999999999999999999999999999864332223589999988322
Q ss_pred ------------cHHHHHHHHccccccCeEEEEEEc
Q 022962 203 ------------EMRILAEYCLPLVRVGGLFVAAKG 226 (289)
Q Consensus 203 ------------~~~~ll~~~~~~LkpgG~l~~~~g 226 (289)
..+.+++.+.+.|+|||.|.+-..
T Consensus 130 PWpKkRH~KRRl~~~~fl~~~a~~Lk~gG~l~~aTD 165 (227)
T COG0220 130 PWPKKRHHKRRLTQPEFLKLYARKLKPGGVLHFATD 165 (227)
T ss_pred CCCCccccccccCCHHHHHHHHHHccCCCEEEEEec
Confidence 237899999999999999998664
No 155
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=99.12 E-value=5.1e-10 Score=107.28 Aligned_cols=97 Identities=19% Similarity=0.233 Sum_probs=75.3
Q ss_pred CCeEEEEcCCCChHHHHHHHHC----CCCEEEEEeCChHHHHHHHHHHHHcCC-CCEEEEeccccccCCCCcCCCCceEE
Q 022962 122 NLKLVDVGTGAGLPGLVLAIAC----PDWKVTLLESMNKRCVFLEHAVSLTQL-LNVQIVRGRAETLGKDVSFREQYDVA 196 (289)
Q Consensus 122 ~~~VLDiGcG~G~~~l~la~~~----p~~~V~~iD~s~~~l~~a~~~~~~~~l-~ni~~~~~d~~~~~~~~~~~~~fD~V 196 (289)
+..|+|||||+|.++...+++. ...+|+|||.|+.++..+++.++.++. ++|+++++|++++..+ +++|+|
T Consensus 187 ~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~n~w~~~V~vi~~d~r~v~lp----ekvDII 262 (448)
T PF05185_consen 187 DKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVNANGWGDKVTVIHGDMREVELP----EKVDII 262 (448)
T ss_dssp T-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHHHTTTTTTEEEEES-TTTSCHS----S-EEEE
T ss_pred ceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHhcCCCCeEEEEeCcccCCCCC----CceeEE
Confidence 5689999999999987665442 357999999999999888888788887 4699999999998764 689999
Q ss_pred EEcCc------ccHHHHHHHHccccccCeEEE
Q 022962 197 VARAV------AEMRILAEYCLPLVRVGGLFV 222 (289)
Q Consensus 197 ~sn~~------~~~~~ll~~~~~~LkpgG~l~ 222 (289)
||--+ +-.++.+..+.++|||||.++
T Consensus 263 VSElLGsfg~nEl~pE~Lda~~rfLkp~Gi~I 294 (448)
T PF05185_consen 263 VSELLGSFGDNELSPECLDAADRFLKPDGIMI 294 (448)
T ss_dssp EE---BTTBTTTSHHHHHHHGGGGEEEEEEEE
T ss_pred EEeccCCccccccCHHHHHHHHhhcCCCCEEe
Confidence 99621 234677889999999999988
No 156
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=99.11 E-value=3.5e-10 Score=95.54 Aligned_cols=124 Identities=15% Similarity=0.098 Sum_probs=88.1
Q ss_pred CCCCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCcCCCCceEEEE
Q 022962 119 CNSNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVA 198 (289)
Q Consensus 119 ~~~~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~~~~~fD~V~s 198 (289)
++++.+|||+|||.|.+.-.|... .+.+.+|||++++.+..+.++ .+.++++|+++--.. ..+++||.|+.
T Consensus 11 I~pgsrVLDLGCGdG~LL~~L~~~-k~v~g~GvEid~~~v~~cv~r-------Gv~Viq~Dld~gL~~-f~d~sFD~VIl 81 (193)
T PF07021_consen 11 IEPGSRVLDLGCGDGELLAYLKDE-KQVDGYGVEIDPDNVAACVAR-------GVSVIQGDLDEGLAD-FPDQSFDYVIL 81 (193)
T ss_pred cCCCCEEEecCCCchHHHHHHHHh-cCCeEEEEecCHHHHHHHHHc-------CCCEEECCHHHhHhh-CCCCCccEEeh
Confidence 346899999999999987666654 588999999999987766552 367899999874221 22589999998
Q ss_pred c----CcccHHHHHHHHccccccCeEEEEEEcC---------------C----------------cHHHHHHHHHHHHHh
Q 022962 199 R----AVAEMRILAEYCLPLVRVGGLFVAAKGH---------------D----------------PQEEVKNSERAVQLM 243 (289)
Q Consensus 199 n----~~~~~~~ll~~~~~~LkpgG~l~~~~g~---------------~----------------~~~ei~~~~~~l~~~ 243 (289)
+ ++..++.+++++.|+ |...++..+. . +.-.+.+....+++.
T Consensus 82 sqtLQ~~~~P~~vL~EmlRV---gr~~IVsFPNFg~W~~R~~l~~~GrmPvt~~lPy~WYdTPNih~~Ti~DFe~lc~~~ 158 (193)
T PF07021_consen 82 SQTLQAVRRPDEVLEEMLRV---GRRAIVSFPNFGHWRNRLQLLLRGRMPVTKALPYEWYDTPNIHLCTIKDFEDLCREL 158 (193)
T ss_pred HhHHHhHhHHHHHHHHHHHh---cCeEEEEecChHHHHHHHHHHhcCCCCCCCCCCCcccCCCCcccccHHHHHHHHHHC
Confidence 7 355778888887544 5555543211 0 111356667778889
Q ss_pred CCeEeEEeeee
Q 022962 244 GASLLQLCSVE 254 (289)
Q Consensus 244 g~~~~~~~~~~ 254 (289)
|+.+.+...+.
T Consensus 159 ~i~I~~~~~~~ 169 (193)
T PF07021_consen 159 GIRIEERVFLD 169 (193)
T ss_pred CCEEEEEEEEc
Confidence 99988877663
No 157
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=99.11 E-value=1.8e-10 Score=97.01 Aligned_cols=105 Identities=19% Similarity=0.190 Sum_probs=73.3
Q ss_pred CCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcC---CCCEEEEeccccccC-CCCcCCCCceEE
Q 022962 121 SNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQ---LLNVQIVRGRAETLG-KDVSFREQYDVA 196 (289)
Q Consensus 121 ~~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~---l~ni~~~~~d~~~~~-~~~~~~~~fD~V 196 (289)
.+.+||+||||+|..|+.+|...+..+|++.|.++ .++.++.|++.++ ..++++...|+.+-. .......+||+|
T Consensus 45 ~~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~-~l~~l~~Ni~~N~~~~~~~v~v~~L~Wg~~~~~~~~~~~~~D~I 123 (173)
T PF10294_consen 45 RGKRVLELGAGTGLPGIAAAKLFGAARVVLTDYNE-VLELLRRNIELNGSLLDGRVSVRPLDWGDELDSDLLEPHSFDVI 123 (173)
T ss_dssp TTSEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S--HHHHHHHHHHTT--------EEEE--TTS-HHHHHHS-SSBSEE
T ss_pred CCceEEEECCccchhHHHHHhccCCceEEEeccch-hhHHHHHHHHhccccccccccCcEEEecCcccccccccccCCEE
Confidence 47899999999999999999876778999999999 9999999999887 246888888875521 110113589999
Q ss_pred EEcC----cccHHHHHHHHccccccCeEEEEEEc
Q 022962 197 VARA----VAEMRILAEYCLPLVRVGGLFVAAKG 226 (289)
Q Consensus 197 ~sn~----~~~~~~ll~~~~~~LkpgG~l~~~~g 226 (289)
++.. ....+.+++.+.++|+++|.+++...
T Consensus 124 lasDv~Y~~~~~~~L~~tl~~ll~~~~~vl~~~~ 157 (173)
T PF10294_consen 124 LASDVLYDEELFEPLVRTLKRLLKPNGKVLLAYK 157 (173)
T ss_dssp EEES--S-GGGHHHHHHHHHHHBTT-TTEEEEEE
T ss_pred EEecccchHHHHHHHHHHHHHHhCCCCEEEEEeC
Confidence 9874 34678899999999999999776553
No 158
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=99.10 E-value=1.1e-09 Score=95.70 Aligned_cols=102 Identities=14% Similarity=0.008 Sum_probs=78.8
Q ss_pred CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHH------------HcCCCCEEEEeccccccCCCCcC
Q 022962 122 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVS------------LTQLLNVQIVRGRAETLGKDVSF 189 (289)
Q Consensus 122 ~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~------------~~~l~ni~~~~~d~~~~~~~~~~ 189 (289)
+.+||+.|||.|.-.+.||.. +.+|+|+|+|+.+++.+.+... ...-.+|+++++|+.++......
T Consensus 44 ~~rvLvPgCGkg~D~~~LA~~--G~~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gD~f~l~~~~~~ 121 (226)
T PRK13256 44 SSVCLIPMCGCSIDMLFFLSK--GVKVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDIEIYVADIFNLPKIANN 121 (226)
T ss_pred CCeEEEeCCCChHHHHHHHhC--CCcEEEEecCHHHHHHHHHHcCCCcceecccccceeccCceEEEEccCcCCCccccc
Confidence 679999999999999999975 7899999999999998755210 01123699999999998642122
Q ss_pred CCCceEEEEcC----c--ccHHHHHHHHccccccCeEEEEEE
Q 022962 190 REQYDVAVARA----V--AEMRILAEYCLPLVRVGGLFVAAK 225 (289)
Q Consensus 190 ~~~fD~V~sn~----~--~~~~~ll~~~~~~LkpgG~l~~~~ 225 (289)
.++||+|+=++ + ......++.+.++|+|||.+++..
T Consensus 122 ~~~fD~VyDra~~~Alpp~~R~~Y~~~l~~lL~pgg~llll~ 163 (226)
T PRK13256 122 LPVFDIWYDRGAYIALPNDLRTNYAKMMLEVCSNNTQILLLV 163 (226)
T ss_pred cCCcCeeeeehhHhcCCHHHHHHHHHHHHHHhCCCcEEEEEE
Confidence 35799988663 2 246789999999999999998653
No 159
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=99.08 E-value=6e-10 Score=94.67 Aligned_cols=106 Identities=18% Similarity=0.244 Sum_probs=78.6
Q ss_pred CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCC-EEEEeccccccC-CCCcCCCCceEEEEc
Q 022962 122 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLN-VQIVRGRAETLG-KDVSFREQYDVAVAR 199 (289)
Q Consensus 122 ~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~n-i~~~~~d~~~~~-~~~~~~~~fD~V~sn 199 (289)
+.++||+.||||.+|+... .....+|+.||.|.+++..+++|++.++..+ +++++.|+...- .......+||+|++.
T Consensus 43 g~~vLDLFaGSGalGlEAL-SRGA~~v~fVE~~~~a~~~i~~N~~~l~~~~~~~v~~~d~~~~l~~~~~~~~~fDiIflD 121 (183)
T PF03602_consen 43 GARVLDLFAGSGALGLEAL-SRGAKSVVFVEKNRKAIKIIKKNLEKLGLEDKIRVIKGDAFKFLLKLAKKGEKFDIIFLD 121 (183)
T ss_dssp T-EEEETT-TTSHHHHHHH-HTT-SEEEEEES-HHHHHHHHHHHHHHT-GGGEEEEESSHHHHHHHHHHCTS-EEEEEE-
T ss_pred CCeEEEcCCccCccHHHHH-hcCCCeEEEEECCHHHHHHHHHHHHHhCCCcceeeeccCHHHHHHhhcccCCCceEEEEC
Confidence 8899999999999999854 4467899999999999999999999999875 999999976532 110124789999998
Q ss_pred C---ccc-HHHHHHHHc--cccccCeEEEEEEcCC
Q 022962 200 A---VAE-MRILAEYCL--PLVRVGGLFVAAKGHD 228 (289)
Q Consensus 200 ~---~~~-~~~ll~~~~--~~LkpgG~l~~~~g~~ 228 (289)
+ ... +..+++.+. .+|+++|.+++++...
T Consensus 122 PPY~~~~~~~~~l~~l~~~~~l~~~~~ii~E~~~~ 156 (183)
T PF03602_consen 122 PPYAKGLYYEELLELLAENNLLNEDGLIIIEHSKK 156 (183)
T ss_dssp -STTSCHHHHHHHHHHHHTTSEEEEEEEEEEEETT
T ss_pred CCcccchHHHHHHHHHHHCCCCCCCEEEEEEecCC
Confidence 4 223 477777766 8999999999998643
No 160
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=99.07 E-value=6e-09 Score=90.95 Aligned_cols=129 Identities=16% Similarity=0.083 Sum_probs=88.7
Q ss_pred CCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHH------------cCCCCEEEEeccccccCCCCc
Q 022962 121 SNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSL------------TQLLNVQIVRGRAETLGKDVS 188 (289)
Q Consensus 121 ~~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~------------~~l~ni~~~~~d~~~~~~~~~ 188 (289)
.+.+||+.|||.|.-.+.||.. +.+|+|+|+|+.+++.+.+.... ....+|+++++|+.++....
T Consensus 37 ~~~rvLvPgCG~g~D~~~La~~--G~~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gDfF~l~~~~- 113 (218)
T PF05724_consen 37 PGGRVLVPGCGKGYDMLWLAEQ--GHDVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRITIYCGDFFELPPED- 113 (218)
T ss_dssp TSEEEEETTTTTSCHHHHHHHT--TEEEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSSEEEEES-TTTGGGSC-
T ss_pred CCCeEEEeCCCChHHHHHHHHC--CCeEEEEecCHHHHHHHHHHhccCCCcccccceeeecCCceEEEEcccccCChhh-
Confidence 3679999999999999999975 68999999999999887432111 11235899999999986532
Q ss_pred CCCCceEEEEcC------cccHHHHHHHHccccccCeEEEE--EE-------cCCcHHHHHHHHHHHHHhCCeEeEEeee
Q 022962 189 FREQYDVAVARA------VAEMRILAEYCLPLVRVGGLFVA--AK-------GHDPQEEVKNSERAVQLMGASLLQLCSV 253 (289)
Q Consensus 189 ~~~~fD~V~sn~------~~~~~~ll~~~~~~LkpgG~l~~--~~-------g~~~~~ei~~~~~~l~~~g~~~~~~~~~ 253 (289)
.++||+|+=++ ....+...+.+.++|+|||.+++ .. |+...-...++.+.+. .+|++..+...
T Consensus 114 -~g~fD~iyDr~~l~Alpp~~R~~Ya~~l~~ll~p~g~~lLi~l~~~~~~~~GPPf~v~~~ev~~l~~-~~f~i~~l~~~ 191 (218)
T PF05724_consen 114 -VGKFDLIYDRTFLCALPPEMRERYAQQLASLLKPGGRGLLITLEYPQGEMEGPPFSVTEEEVRELFG-PGFEIEELEEE 191 (218)
T ss_dssp -HHSEEEEEECSSTTTS-GGGHHHHHHHHHHCEEEEEEEEEEEEES-CSCSSSSS----HHHHHHHHT-TTEEEEEEEEE
T ss_pred -cCCceEEEEecccccCCHHHHHHHHHHHHHHhCCCCcEEEEEEEcCCcCCCCcCCCCCHHHHHHHhc-CCcEEEEEecc
Confidence 25799999663 23578999999999999999432 22 2222222344444444 68887777654
Q ss_pred e
Q 022962 254 E 254 (289)
Q Consensus 254 ~ 254 (289)
+
T Consensus 192 ~ 192 (218)
T PF05724_consen 192 D 192 (218)
T ss_dssp E
T ss_pred c
Confidence 4
No 161
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=99.05 E-value=3e-09 Score=102.51 Aligned_cols=105 Identities=19% Similarity=0.239 Sum_probs=87.1
Q ss_pred CCCCeEEEEcCCCChHHHHHHHHCC-CCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCcCCCCceEEEE
Q 022962 120 NSNLKLVDVGTGAGLPGLVLAIACP-DWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVA 198 (289)
Q Consensus 120 ~~~~~VLDiGcG~G~~~l~la~~~p-~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~~~~~fD~V~s 198 (289)
+++.+|||+|||+|.=+..+|.... .+.|+++|+++..+..+++|++++|+.|+.+.+.|...+.. .+.+.||.|+.
T Consensus 112 ~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G~~nv~v~~~D~~~~~~--~~~~~fD~ILv 189 (470)
T PRK11933 112 NAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRCGVSNVALTHFDGRVFGA--ALPETFDAILL 189 (470)
T ss_pred CCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCchhhhhh--hchhhcCeEEE
Confidence 4688999999999999999987763 47999999999999999999999999999999999887643 23467999997
Q ss_pred cCcc--------------------------cHHHHHHHHccccccCeEEEEEEc
Q 022962 199 RAVA--------------------------EMRILAEYCLPLVRVGGLFVAAKG 226 (289)
Q Consensus 199 n~~~--------------------------~~~~ll~~~~~~LkpgG~l~~~~g 226 (289)
.+.. --..+|..+.++|||||+++...-
T Consensus 190 DaPCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~LVYSTC 243 (470)
T PRK11933 190 DAPCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTLVYSTC 243 (470)
T ss_pred cCCCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEECC
Confidence 6310 126889999999999999976543
No 162
>PLN02823 spermine synthase
Probab=99.04 E-value=7.3e-09 Score=95.88 Aligned_cols=146 Identities=14% Similarity=0.136 Sum_probs=102.4
Q ss_pred CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcC----CCCEEEEeccccccCCCCcCCCCceEEE
Q 022962 122 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQ----LLNVQIVRGRAETLGKDVSFREQYDVAV 197 (289)
Q Consensus 122 ~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~----l~ni~~~~~d~~~~~~~~~~~~~fD~V~ 197 (289)
..+||.||+|.|..+..+.+..+..+|++||+++++++.|++.....+ -.+++++.+|...+-.. .+++||+|+
T Consensus 104 pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~--~~~~yDvIi 181 (336)
T PLN02823 104 PKTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAELEK--RDEKFDVII 181 (336)
T ss_pred CCEEEEECCCchHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHHhh--CCCCccEEE
Confidence 568999999999988877765556799999999999999999765331 24699999999886432 246899999
Q ss_pred EcCccc----------HHHHHH-HHccccccCeEEEEEEcCC----cHHHHHHHHHHHHHhCCeEeEEeeeecCCCCCce
Q 022962 198 ARAVAE----------MRILAE-YCLPLVRVGGLFVAAKGHD----PQEEVKNSERAVQLMGASLLQLCSVESQSPFGQR 262 (289)
Q Consensus 198 sn~~~~----------~~~ll~-~~~~~LkpgG~l~~~~g~~----~~~ei~~~~~~l~~~g~~~~~~~~~~~~~~~~~r 262 (289)
+....+ -.++++ .+.+.|+|||.+++..+.. ..+....+.+.++.. |..+.......|.-...+
T Consensus 182 ~D~~dp~~~~~~~~Lyt~eF~~~~~~~~L~p~Gvlv~q~~s~~~~~~~~~~~~i~~tl~~v-F~~v~~y~~~vPsf~~~w 260 (336)
T PLN02823 182 GDLADPVEGGPCYQLYTKSFYERIVKPKLNPGGIFVTQAGPAGILTHKEVFSSIYNTLRQV-FKYVVPYTAHVPSFADTW 260 (336)
T ss_pred ecCCCccccCcchhhccHHHHHHHHHHhcCCCcEEEEeccCcchhccHHHHHHHHHHHHHh-CCCEEEEEeecCCCCCce
Confidence 974221 246787 8999999999998765431 234455566666654 443444433334433456
Q ss_pred EEEEEEec
Q 022962 263 TAVVCLKS 270 (289)
Q Consensus 263 ~lv~~~k~ 270 (289)
..++..+.
T Consensus 261 ~f~~aS~~ 268 (336)
T PLN02823 261 GWVMASDH 268 (336)
T ss_pred EEEEEeCC
Confidence 67776654
No 163
>KOG2899 consensus Predicted methyltransferase [General function prediction only]
Probab=99.03 E-value=1.5e-09 Score=94.18 Aligned_cols=100 Identities=13% Similarity=0.157 Sum_probs=76.5
Q ss_pred CCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCC-----C------------------------
Q 022962 121 SNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQL-----L------------------------ 171 (289)
Q Consensus 121 ~~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l-----~------------------------ 171 (289)
.+..+|||||-+|.+++.+|+.+....|.|+||++..+..|+++++...- .
T Consensus 58 ~~~~~LDIGCNsG~lt~~iak~F~~r~iLGvDID~~LI~~Ark~~r~~~~~~~~~~~~~~~~~~~~~~~is~~~~a~~a~ 137 (288)
T KOG2899|consen 58 EPKQALDIGCNSGFLTLSIAKDFGPRRILGVDIDPVLIQRARKEIRFPCDHETEVSGKFPASFGVQFGPISQRNEADRAF 137 (288)
T ss_pred CcceeEeccCCcchhHHHHHHhhccceeeEeeccHHHHHHHHHhccccccccccccCCCccccccccccccccccccccc
Confidence 47899999999999999999999888999999999999999998764321 0
Q ss_pred ------CEEEE-------eccccccCCCCcCCCCceEEEEcC----------cccHHHHHHHHccccccCeEEEEEE
Q 022962 172 ------NVQIV-------RGRAETLGKDVSFREQYDVAVARA----------VAEMRILAEYCLPLVRVGGLFVAAK 225 (289)
Q Consensus 172 ------ni~~~-------~~d~~~~~~~~~~~~~fD~V~sn~----------~~~~~~ll~~~~~~LkpgG~l~~~~ 225 (289)
|+.+. ..|..+. ....||+|+|-. -..+..++..++++|.|||+|+++-
T Consensus 138 t~~~p~n~~f~~~n~vle~~dfl~~-----~~~~fDiIlcLSiTkWIHLNwgD~GL~~ff~kis~ll~pgGiLvvEP 209 (288)
T KOG2899|consen 138 TTDFPDNVWFQKENYVLESDDFLDM-----IQPEFDIILCLSITKWIHLNWGDDGLRRFFRKISSLLHPGGILVVEP 209 (288)
T ss_pred cccCCcchhcccccEEEecchhhhh-----ccccccEEEEEEeeeeEecccccHHHHHHHHHHHHhhCcCcEEEEcC
Confidence 11111 1111111 135799999974 2358999999999999999999863
No 164
>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.
Probab=99.03 E-value=3.1e-09 Score=90.06 Aligned_cols=122 Identities=12% Similarity=0.043 Sum_probs=86.6
Q ss_pred CCCCeEEEEcCCCChHHHHHHHHCCCCE---------EEEEeCChHHHHHHHHHHHHcCCCC-EEEEeccccccCCCCcC
Q 022962 120 NSNLKLVDVGTGAGLPGLVLAIACPDWK---------VTLLESMNKRCVFLEHAVSLTQLLN-VQIVRGRAETLGKDVSF 189 (289)
Q Consensus 120 ~~~~~VLDiGcG~G~~~l~la~~~p~~~---------V~~iD~s~~~l~~a~~~~~~~~l~n-i~~~~~d~~~~~~~~~~ 189 (289)
+++..+||--||+|.+.+..|....... ++|.|+++++++.+++|++..++.. |.+.+.|+.+++..
T Consensus 27 ~~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag~~~~i~~~~~D~~~l~~~--- 103 (179)
T PF01170_consen 27 RPGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAGVEDYIDFIQWDARELPLP--- 103 (179)
T ss_dssp -TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT-CGGEEEEE--GGGGGGT---
T ss_pred CCCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhcccCCceEEEecchhhcccc---
Confidence 3578999999999999999887655555 9999999999999999999999864 89999999998732
Q ss_pred CCCceEEEEcC------------cccHHHHHHHHccccccCeEEEEEEcCCcHHHHHHHHHHHHHhCCeEeEEe
Q 022962 190 REQYDVAVARA------------VAEMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLLQLC 251 (289)
Q Consensus 190 ~~~fD~V~sn~------------~~~~~~ll~~~~~~LkpgG~l~~~~g~~~~~ei~~~~~~l~~~g~~~~~~~ 251 (289)
++++|.|++|. ..-+..+++++.++|++ ...++..+....++ .+...++......
T Consensus 104 ~~~~d~IvtnPPyG~r~~~~~~~~~ly~~~~~~~~~~l~~-~~v~l~~~~~~~~~------~~~~~~~~~~~~~ 170 (179)
T PF01170_consen 104 DGSVDAIVTNPPYGRRLGSKKDLEKLYRQFLRELKRVLKP-RAVFLTTSNRELEK------ALGLKGWRKRKLY 170 (179)
T ss_dssp TSBSCEEEEE--STTSHCHHHHHHHHHHHHHHHHHCHSTT-CEEEEEESCCCHHH------HHTSTTSEEEEEE
T ss_pred cCCCCEEEECcchhhhccCHHHHHHHHHHHHHHHHHHCCC-CEEEEEECCHHHHH------HhcchhhceEEEE
Confidence 37899999993 11257888999999999 44444444433322 3334566554443
No 165
>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species. The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.
Probab=99.03 E-value=2.4e-09 Score=96.77 Aligned_cols=105 Identities=13% Similarity=0.199 Sum_probs=80.2
Q ss_pred CCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCC--CEEEEeccccccCCCCcCCCCceEEEE
Q 022962 121 SNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLL--NVQIVRGRAETLGKDVSFREQYDVAVA 198 (289)
Q Consensus 121 ~~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~--ni~~~~~d~~~~~~~~~~~~~fD~V~s 198 (289)
++.+|||+-|=||.+++..+. ....+|+.||.|..+++.+++|++.++++ ++++++.|+.++-......++||+|++
T Consensus 123 ~gkrvLnlFsYTGgfsv~Aa~-gGA~~v~~VD~S~~al~~a~~N~~lNg~~~~~~~~~~~Dvf~~l~~~~~~~~fD~IIl 201 (286)
T PF10672_consen 123 KGKRVLNLFSYTGGFSVAAAA-GGAKEVVSVDSSKRALEWAKENAALNGLDLDRHRFIQGDVFKFLKRLKKGGRFDLIIL 201 (286)
T ss_dssp TTCEEEEET-TTTHHHHHHHH-TTESEEEEEES-HHHHHHHHHHHHHTT-CCTCEEEEES-HHHHHHHHHHTT-EEEEEE
T ss_pred CCCceEEecCCCCHHHHHHHH-CCCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHHHhcCCCCCEEEE
Confidence 478999999999999998664 45568999999999999999999999974 699999999874221111368999999
Q ss_pred cC----------cccHHHHHHHHccccccCeEEEEEEc
Q 022962 199 RA----------VAEMRILAEYCLPLVRVGGLFVAAKG 226 (289)
Q Consensus 199 n~----------~~~~~~ll~~~~~~LkpgG~l~~~~g 226 (289)
.+ ..++..++..+.++|+|||.+++...
T Consensus 202 DPPsF~k~~~~~~~~y~~L~~~a~~ll~~gG~l~~~sc 239 (286)
T PF10672_consen 202 DPPSFAKSKFDLERDYKKLLRRAMKLLKPGGLLLTCSC 239 (286)
T ss_dssp --SSEESSTCEHHHHHHHHHHHHHHTEEEEEEEEEEE-
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHhcCCCCEEEEEcC
Confidence 84 23688999999999999999987654
No 166
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=99.02 E-value=9.3e-09 Score=92.76 Aligned_cols=72 Identities=22% Similarity=0.153 Sum_probs=59.6
Q ss_pred CCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCcCCCCceEEEEcC
Q 022962 121 SNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARA 200 (289)
Q Consensus 121 ~~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~~~~~fD~V~sn~ 200 (289)
++.+|||||||+|.++..++... .+|+|+|+|+++++.++++... ++++++++|+.+++.+. -.+|.|++|.
T Consensus 42 ~~~~VLEiG~G~G~lt~~L~~~~--~~v~avE~d~~~~~~~~~~~~~---~~v~~i~~D~~~~~~~~---~~~~~vv~Nl 113 (272)
T PRK00274 42 PGDNVLEIGPGLGALTEPLLERA--AKVTAVEIDRDLAPILAETFAE---DNLTIIEGDALKVDLSE---LQPLKVVANL 113 (272)
T ss_pred CcCeEEEeCCCccHHHHHHHHhC--CcEEEEECCHHHHHHHHHhhcc---CceEEEEChhhcCCHHH---cCcceEEEeC
Confidence 47799999999999999999874 3999999999999999886642 58999999999875431 1159999994
No 167
>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]
Probab=99.02 E-value=2.7e-09 Score=100.12 Aligned_cols=128 Identities=14% Similarity=0.156 Sum_probs=98.6
Q ss_pred CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCC--CEEEEeccccccCCCC-cCCCCceEEEE
Q 022962 122 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLL--NVQIVRGRAETLGKDV-SFREQYDVAVA 198 (289)
Q Consensus 122 ~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~--ni~~~~~d~~~~~~~~-~~~~~fD~V~s 198 (289)
|.+|||+-|=||..++..|.. ...+||.||.|..+++.|++|++.+|++ .++++++|+.++-... .-..+||+|+.
T Consensus 218 GkrvLNlFsYTGgfSv~Aa~g-GA~~vt~VD~S~~al~~a~~N~~LNg~~~~~~~~i~~Dvf~~l~~~~~~g~~fDlIil 296 (393)
T COG1092 218 GKRVLNLFSYTGGFSVHAALG-GASEVTSVDLSKRALEWARENAELNGLDGDRHRFIVGDVFKWLRKAERRGEKFDLIIL 296 (393)
T ss_pred CCeEEEecccCcHHHHHHHhc-CCCceEEEeccHHHHHHHHHHHHhcCCCccceeeehhhHHHHHHHHHhcCCcccEEEE
Confidence 889999999999999987754 4459999999999999999999999985 4899999998863321 11358999999
Q ss_pred cC-------------cccHHHHHHHHccccccCeEEEEEEcC--CcHHHHH-HHHHHHHHhCCeEeEE
Q 022962 199 RA-------------VAEMRILAEYCLPLVRVGGLFVAAKGH--DPQEEVK-NSERAVQLMGASLLQL 250 (289)
Q Consensus 199 n~-------------~~~~~~ll~~~~~~LkpgG~l~~~~g~--~~~~ei~-~~~~~l~~~g~~~~~~ 250 (289)
.+ ..++..++..+.++|+|||.+++.... -..+.+. .+.+.....|.....+
T Consensus 297 DPPsF~r~k~~~~~~~rdy~~l~~~~~~iL~pgG~l~~~s~~~~~~~~~f~~~i~~a~~~~~~~~~~~ 364 (393)
T COG1092 297 DPPSFARSKKQEFSAQRDYKDLNDLALRLLAPGGTLVTSSCSRHFSSDLFLEIIARAAAAAGRRAQEI 364 (393)
T ss_pred CCcccccCcccchhHHHHHHHHHHHHHHHcCCCCEEEEEecCCccCHHHHHHHHHHHHHhcCCcEEEe
Confidence 83 336889999999999999999987643 2334333 3445555666555444
No 168
>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]
Probab=99.01 E-value=2.2e-09 Score=96.91 Aligned_cols=99 Identities=21% Similarity=0.339 Sum_probs=79.0
Q ss_pred CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCC-CEEEEeccccccCCCCcCCCCceEEEEcC
Q 022962 122 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLL-NVQIVRGRAETLGKDVSFREQYDVAVARA 200 (289)
Q Consensus 122 ~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~-ni~~~~~d~~~~~~~~~~~~~fD~V~sn~ 200 (289)
+..|||+|||+|++++..|++ ...+|++||.|+ |.+.|+..++.+.+. +|.++.+.+++++.+ ++.|+|+|-.
T Consensus 178 ~kiVlDVGaGSGILS~FAaqA-GA~~vYAvEAS~-MAqyA~~Lv~~N~~~~rItVI~GKiEdieLP----Ek~DviISEP 251 (517)
T KOG1500|consen 178 DKIVLDVGAGSGILSFFAAQA-GAKKVYAVEASE-MAQYARKLVASNNLADRITVIPGKIEDIELP----EKVDVIISEP 251 (517)
T ss_pred CcEEEEecCCccHHHHHHHHh-CcceEEEEehhH-HHHHHHHHHhcCCccceEEEccCccccccCc----hhccEEEecc
Confidence 789999999999999887766 578999999874 788999988887764 699999999998764 8999999986
Q ss_pred cccH---HHHHH---HHccccccCeEEEEEEc
Q 022962 201 VAEM---RILAE---YCLPLVRVGGLFVAAKG 226 (289)
Q Consensus 201 ~~~~---~~ll~---~~~~~LkpgG~l~~~~g 226 (289)
+..+ +++++ .+.++|||.|.++-..|
T Consensus 252 MG~mL~NERMLEsYl~Ark~l~P~GkMfPT~g 283 (517)
T KOG1500|consen 252 MGYMLVNERMLESYLHARKWLKPNGKMFPTVG 283 (517)
T ss_pred chhhhhhHHHHHHHHHHHhhcCCCCcccCccc
Confidence 4321 22222 45699999999985544
No 169
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=99.00 E-value=1.7e-09 Score=96.89 Aligned_cols=71 Identities=23% Similarity=0.243 Sum_probs=61.2
Q ss_pred CCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCcCCCCceEEEEcC
Q 022962 121 SNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARA 200 (289)
Q Consensus 121 ~~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~~~~~fD~V~sn~ 200 (289)
++.+|||||||+|.++..++.. ..+|+|+|+++.+++.++++... .+|++++++|+.+++. ..||.|++|.
T Consensus 29 ~~~~VLEIG~G~G~lt~~L~~~--~~~v~~vEid~~~~~~l~~~~~~--~~~v~ii~~D~~~~~~-----~~~d~Vv~Nl 99 (258)
T PRK14896 29 DGDPVLEIGPGKGALTDELAKR--AKKVYAIELDPRLAEFLRDDEIA--AGNVEIIEGDALKVDL-----PEFNKVVSNL 99 (258)
T ss_pred CcCeEEEEeCccCHHHHHHHHh--CCEEEEEECCHHHHHHHHHHhcc--CCCEEEEEeccccCCc-----hhceEEEEcC
Confidence 4789999999999999999977 46999999999999999987754 3589999999988754 3489999993
No 170
>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2.1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.
Probab=99.00 E-value=8.3e-09 Score=96.39 Aligned_cols=139 Identities=18% Similarity=0.176 Sum_probs=87.0
Q ss_pred CeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCC----c---------C
Q 022962 123 LKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDV----S---------F 189 (289)
Q Consensus 123 ~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~----~---------~ 189 (289)
..|||+-||+|.+|+.+|.. ..+|+|||+++.+++.|++|++.++++|++|++++++++.... . .
T Consensus 198 ~~vlDlycG~G~fsl~la~~--~~~V~gvE~~~~av~~A~~Na~~N~i~n~~f~~~~~~~~~~~~~~~r~~~~~~~~~~~ 275 (352)
T PF05958_consen 198 GDVLDLYCGVGTFSLPLAKK--AKKVIGVEIVEEAVEDARENAKLNGIDNVEFIRGDAEDFAKALAKAREFNRLKGIDLK 275 (352)
T ss_dssp TEEEEES-TTTCCHHHHHCC--SSEEEEEES-HHHHHHHHHHHHHTT--SEEEEE--SHHCCCHHCCS-GGTTGGGS-GG
T ss_pred CcEEEEeecCCHHHHHHHhh--CCeEEEeeCCHHHHHHHHHHHHHcCCCcceEEEeeccchhHHHHhhHHHHhhhhhhhh
Confidence 38999999999999999965 5699999999999999999999999999999998887653210 0 0
Q ss_pred CCCceEEEEcCcc-c-HHHHHHHHccccccCeEEEEEEcCCcHHHHHHHHHHHHHhCCeEeEEeeee-cCCCCCceEEEE
Q 022962 190 REQYDVAVARAVA-E-MRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLLQLCSVE-SQSPFGQRTAVV 266 (289)
Q Consensus 190 ~~~fD~V~sn~~~-~-~~~ll~~~~~~LkpgG~l~~~~g~~~~~ei~~~~~~l~~~g~~~~~~~~~~-~~~~~~~r~lv~ 266 (289)
...+|+|+..+.. . -+.+++.+.+ +. +++..+ -++.--..++.. |. .|+.+.++..++ +|....-.++++
T Consensus 276 ~~~~d~vilDPPR~G~~~~~~~~~~~---~~-~ivYvS-CnP~tlaRDl~~-L~-~~y~~~~v~~~DmFP~T~HvE~v~l 348 (352)
T PF05958_consen 276 SFKFDAVILDPPRAGLDEKVIELIKK---LK-RIVYVS-CNPATLARDLKI-LK-EGYKLEKVQPVDMFPQTHHVETVAL 348 (352)
T ss_dssp CTTESEEEE---TT-SCHHHHHHHHH---SS-EEEEEE-S-HHHHHHHHHH-HH-CCEEEEEEEEE-SSTTSS--EEEEE
T ss_pred hcCCCEEEEcCCCCCchHHHHHHHhc---CC-eEEEEE-CCHHHHHHHHHH-Hh-hcCEEEEEEEeecCCCCCcEEEEEE
Confidence 1368999987421 1 1233433322 23 443333 344444455433 43 499999999997 576666677777
Q ss_pred EEec
Q 022962 267 CLKS 270 (289)
Q Consensus 267 ~~k~ 270 (289)
++|+
T Consensus 349 L~rk 352 (352)
T PF05958_consen 349 LERK 352 (352)
T ss_dssp EEE-
T ss_pred EEeC
Confidence 7764
No 171
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=98.98 E-value=8e-09 Score=88.43 Aligned_cols=141 Identities=14% Similarity=0.126 Sum_probs=101.2
Q ss_pred eEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCE-EEEeccccccCCCCc-----CCCCceEEE
Q 022962 124 KLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNV-QIVRGRAETLGKDVS-----FREQYDVAV 197 (289)
Q Consensus 124 ~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni-~~~~~d~~~~~~~~~-----~~~~fD~V~ 197 (289)
+||+||||||--+..+|..+|..+..-.|.++....-.+..+...+++|+ ..+..|+.+-.-+.. ..++||+|+
T Consensus 28 ~vLEiaSGtGqHa~~FA~~lP~l~WqPSD~~~~~~~sI~a~~~~~~~~Nv~~P~~lDv~~~~w~~~~~~~~~~~~~D~i~ 107 (204)
T PF06080_consen 28 RVLEIASGTGQHAVYFAQALPHLTWQPSDPDDNLRPSIRAWIAEAGLPNVRPPLALDVSAPPWPWELPAPLSPESFDAIF 107 (204)
T ss_pred eEEEEcCCccHHHHHHHHHCCCCEEcCCCCChHHHhhHHHHHHhcCCcccCCCeEeecCCCCCccccccccCCCCcceee
Confidence 59999999999999999999999999999999998888888888888774 344556654322111 236899999
Q ss_pred EcC------cccHHHHHHHHccccccCeEEEEEEcCC------------------------cHHHHHHHHHHHHHhCCeE
Q 022962 198 ARA------VAEMRILAEYCLPLVRVGGLFVAAKGHD------------------------PQEEVKNSERAVQLMGASL 247 (289)
Q Consensus 198 sn~------~~~~~~ll~~~~~~LkpgG~l~~~~g~~------------------------~~~ei~~~~~~l~~~g~~~ 247 (289)
|-. ....+.+++.+.++|++||.|+++-+.. ...+++++.+.....|+.+
T Consensus 108 ~~N~lHI~p~~~~~~lf~~a~~~L~~gG~L~~YGPF~~~G~~ts~SN~~FD~sLr~rdp~~GiRD~e~v~~lA~~~GL~l 187 (204)
T PF06080_consen 108 CINMLHISPWSAVEGLFAGAARLLKPGGLLFLYGPFNRDGKFTSESNAAFDASLRSRDPEWGIRDIEDVEALAAAHGLEL 187 (204)
T ss_pred ehhHHHhcCHHHHHHHHHHHHHhCCCCCEEEEeCCcccCCEeCCcHHHHHHHHHhcCCCCcCccCHHHHHHHHHHCCCcc
Confidence 863 3356899999999999999998752111 0112455666677889988
Q ss_pred eEEeeeecCCCCCceEEEEEEe
Q 022962 248 LQLCSVESQSPFGQRTAVVCLK 269 (289)
Q Consensus 248 ~~~~~~~~~~~~~~r~lv~~~k 269 (289)
.+...+ | +-..+++++|
T Consensus 188 ~~~~~M--P---ANN~~Lvfrk 204 (204)
T PF06080_consen 188 EEDIDM--P---ANNLLLVFRK 204 (204)
T ss_pred Cccccc--C---CCCeEEEEeC
Confidence 777533 2 3344555553
No 172
>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase. This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.
Probab=98.97 E-value=2.2e-09 Score=100.75 Aligned_cols=100 Identities=11% Similarity=0.132 Sum_probs=87.6
Q ss_pred CeEEEEcCCCChHHHHHHHHCC-CCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCcCCCCceEEEEcCc
Q 022962 123 LKLVDVGTGAGLPGLVLAIACP-DWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARAV 201 (289)
Q Consensus 123 ~~VLDiGcG~G~~~l~la~~~p-~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~~~~~fD~V~sn~~ 201 (289)
.+|||+.||+|..|+.++...+ ..+|+++|+|+++++.+++|++.+++++++++++|+..+... ..++||+|...+.
T Consensus 46 ~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N~~~~~~v~~~Da~~~l~~--~~~~fDvIdlDPf 123 (374)
T TIGR00308 46 INIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYNSVENIEVPNEDAANVLRY--RNRKFHVIDIDPF 123 (374)
T ss_pred CEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEchhHHHHHHH--hCCCCCEEEeCCC
Confidence 5899999999999999998753 468999999999999999999999988899999999876432 1257999999987
Q ss_pred ccHHHHHHHHccccccCeEEEEE
Q 022962 202 AEMRILAEYCLPLVRVGGLFVAA 224 (289)
Q Consensus 202 ~~~~~ll~~~~~~LkpgG~l~~~ 224 (289)
.....++..+.+.+++||.+++.
T Consensus 124 Gs~~~fld~al~~~~~~glL~vT 146 (374)
T TIGR00308 124 GTPAPFVDSAIQASAERGLLLVT 146 (374)
T ss_pred CCcHHHHHHHHHhcccCCEEEEE
Confidence 76678999999999999999986
No 173
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=98.95 E-value=9e-09 Score=100.48 Aligned_cols=125 Identities=12% Similarity=0.032 Sum_probs=97.5
Q ss_pred CCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCcCCCCceEEEEcC
Q 022962 121 SNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARA 200 (289)
Q Consensus 121 ~~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~~~~~fD~V~sn~ 200 (289)
.+..+||||||.|-..+.+|..+|+..++|||++...+..+...+...+++|+.+++.|+..+... ..++++|.|+.+-
T Consensus 347 ~~p~~lEIG~G~G~~~~~~A~~~p~~~~iGiE~~~~~~~~~~~~~~~~~l~N~~~~~~~~~~~~~~-~~~~sv~~i~i~F 425 (506)
T PRK01544 347 KRKVFLEIGFGMGEHFINQAKMNPDALFIGVEVYLNGVANVLKLAGEQNITNFLLFPNNLDLILND-LPNNSLDGIYILF 425 (506)
T ss_pred CCceEEEECCCchHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHh-cCcccccEEEEEC
Confidence 356899999999999999999999999999999999999998888889999999999888654321 1247899999983
Q ss_pred ccc------------HHHHHHHHccccccCeEEEEEEcCCcHHHHHHHHHHHHHhC-CeEe
Q 022962 201 VAE------------MRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMG-ASLL 248 (289)
Q Consensus 201 ~~~------------~~~ll~~~~~~LkpgG~l~~~~g~~~~~ei~~~~~~l~~~g-~~~~ 248 (289)
..+ -+.+++...+.|+|||.+.+... ..+-...+...+...+ |+..
T Consensus 426 PDPWpKkrh~krRl~~~~fl~~~~~~Lk~gG~i~~~TD--~~~y~~~~~~~~~~~~~f~~~ 484 (506)
T PRK01544 426 PDPWIKNKQKKKRIFNKERLKILQDKLKDNGNLVFASD--IENYFYEAIELIQQNGNFEII 484 (506)
T ss_pred CCCCCCCCCccccccCHHHHHHHHHhcCCCCEEEEEcC--CHHHHHHHHHHHHhCCCeEec
Confidence 221 27899999999999999987653 3444444455555655 6543
No 174
>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=98.95 E-value=9.5e-09 Score=98.06 Aligned_cols=128 Identities=16% Similarity=0.105 Sum_probs=98.4
Q ss_pred CCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCcCCCCceEEEEcC
Q 022962 121 SNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARA 200 (289)
Q Consensus 121 ~~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~~~~~fD~V~sn~ 200 (289)
++.++||+=||.|.+|+.+|.. ..+|+|+|+++++++.|++|++.++++|++|+.++++++.........||.|+.+.
T Consensus 293 ~~~~vlDlYCGvG~f~l~lA~~--~~~V~gvEi~~~aV~~A~~NA~~n~i~N~~f~~~~ae~~~~~~~~~~~~d~VvvDP 370 (432)
T COG2265 293 GGERVLDLYCGVGTFGLPLAKR--VKKVHGVEISPEAVEAAQENAAANGIDNVEFIAGDAEEFTPAWWEGYKPDVVVVDP 370 (432)
T ss_pred CCCEEEEeccCCChhhhhhccc--CCEEEEEecCHHHHHHHHHHHHHcCCCcEEEEeCCHHHHhhhccccCCCCEEEECC
Confidence 4679999999999999999954 67999999999999999999999999999999999999765421124789999985
Q ss_pred cc-cH-HHHHHHHccccccCeEEEEEEcCCcHHHHHHHHHHHHHhCCeEeEEeeee
Q 022962 201 VA-EM-RILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLLQLCSVE 254 (289)
Q Consensus 201 ~~-~~-~~ll~~~~~~LkpgG~l~~~~g~~~~~ei~~~~~~l~~~g~~~~~~~~~~ 254 (289)
.. .. +.+++.+. .++|...+++...+ ..+..=...|...|+.+.++..++
T Consensus 371 PR~G~~~~~lk~l~-~~~p~~IvYVSCNP---~TlaRDl~~L~~~gy~i~~v~~~D 422 (432)
T COG2265 371 PRAGADREVLKQLA-KLKPKRIVYVSCNP---ATLARDLAILASTGYEIERVQPFD 422 (432)
T ss_pred CCCCCCHHHHHHHH-hcCCCcEEEEeCCH---HHHHHHHHHHHhCCeEEEEEEEec
Confidence 32 22 36666655 46777888775543 222222345678898888888775
No 175
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=98.94 E-value=1.4e-08 Score=85.79 Aligned_cols=106 Identities=19% Similarity=0.225 Sum_probs=81.1
Q ss_pred CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCC-CEEEEeccccccCCCCcCCCCceEEEEcC
Q 022962 122 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLL-NVQIVRGRAETLGKDVSFREQYDVAVARA 200 (289)
Q Consensus 122 ~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~-ni~~~~~d~~~~~~~~~~~~~fD~V~sn~ 200 (289)
+.++||+-+|||.+|+..+. ....+++.||.|.+++..+++|++.+++. +.+++..|+..+.......++||+|+..+
T Consensus 44 g~~~LDlFAGSGaLGlEAlS-RGA~~~~~vE~~~~a~~~l~~N~~~l~~~~~~~~~~~da~~~L~~~~~~~~FDlVflDP 122 (187)
T COG0742 44 GARVLDLFAGSGALGLEALS-RGAARVVFVEKDRKAVKILKENLKALGLEGEARVLRNDALRALKQLGTREPFDLVFLDP 122 (187)
T ss_pred CCEEEEecCCccHhHHHHHh-CCCceEEEEecCHHHHHHHHHHHHHhCCccceEEEeecHHHHHHhcCCCCcccEEEeCC
Confidence 88999999999999999654 45789999999999999999999999964 68999999985422111123599999984
Q ss_pred c-----ccHHHHHH--HHccccccCeEEEEEEcCC
Q 022962 201 V-----AEMRILAE--YCLPLVRVGGLFVAAKGHD 228 (289)
Q Consensus 201 ~-----~~~~~ll~--~~~~~LkpgG~l~~~~g~~ 228 (289)
. .+....+. .-..+|+|+|.++++....
T Consensus 123 Py~~~l~~~~~~~~~~~~~~~L~~~~~iv~E~~~~ 157 (187)
T COG0742 123 PYAKGLLDKELALLLLEENGWLKPGALIVVEHDKD 157 (187)
T ss_pred CCccchhhHHHHHHHHHhcCCcCCCcEEEEEeCCC
Confidence 1 11122222 2468899999999998754
No 176
>TIGR00478 tly hemolysin TlyA family protein. Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).
Probab=98.94 E-value=6.4e-09 Score=91.22 Aligned_cols=120 Identities=12% Similarity=0.009 Sum_probs=73.6
Q ss_pred CCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHH-HHHHHH--HcCCCCEEEEeccccccCCCCcCCCCceEEE
Q 022962 121 SNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVF-LEHAVS--LTQLLNVQIVRGRAETLGKDVSFREQYDVAV 197 (289)
Q Consensus 121 ~~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~-a~~~~~--~~~l~ni~~~~~d~~~~~~~~~~~~~fD~V~ 197 (289)
++.+|||+|||||.++..+++. +..+|+|+|+++.++.. ++++.+ ..+..|++ +.+.+++.. ++ ..||+++
T Consensus 75 ~~~~vlDiG~gtG~~t~~l~~~-ga~~v~avD~~~~~l~~~l~~~~~v~~~~~~ni~--~~~~~~~~~--d~-~~~Dvsf 148 (228)
T TIGR00478 75 KNKIVLDVGSSTGGFTDCALQK-GAKEVYGVDVGYNQLAEKLRQDERVKVLERTNIR--YVTPADIFP--DF-ATFDVSF 148 (228)
T ss_pred CCCEEEEcccCCCHHHHHHHHc-CCCEEEEEeCCHHHHHHHHhcCCCeeEeecCCcc--cCCHhHcCC--Cc-eeeeEEE
Confidence 3779999999999999999875 56799999999988765 333222 12333444 223333321 11 2577666
Q ss_pred EcCcccHHHHHHHHccccccCeEEEEEE------cC----------C---cHHHHHHHHHHHHHhCCeEeEEe
Q 022962 198 ARAVAEMRILAEYCLPLVRVGGLFVAAK------GH----------D---PQEEVKNSERAVQLMGASLLQLC 251 (289)
Q Consensus 198 sn~~~~~~~ll~~~~~~LkpgG~l~~~~------g~----------~---~~~ei~~~~~~l~~~g~~~~~~~ 251 (289)
+. +..++..+..+|++ |.+++.. |. + +..-+.++...+...||.+..+.
T Consensus 149 iS----~~~~l~~i~~~l~~-~~~~~L~KPqFE~~~~~~~~~giv~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (228)
T TIGR00478 149 IS----LISILPELDLLLNP-NDLTLLFKPQFEAGREKKNKKGVVRDKEAIALALHKVIDKGESPDFQEKKII 216 (228)
T ss_pred ee----hHhHHHHHHHHhCc-CeEEEEcChHhhhcHhhcCcCCeecCHHHHHHHHHHHHHHHHcCCCeEeeEE
Confidence 44 23356777778888 7776432 11 0 11223445555667899877765
No 177
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=98.94 E-value=3.6e-09 Score=96.37 Aligned_cols=73 Identities=19% Similarity=0.204 Sum_probs=63.0
Q ss_pred CCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcC-CCCEEEEeccccccCCCCcCCCCceEEEEc
Q 022962 121 SNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQ-LLNVQIVRGRAETLGKDVSFREQYDVAVAR 199 (289)
Q Consensus 121 ~~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~-l~ni~~~~~d~~~~~~~~~~~~~fD~V~sn 199 (289)
++.+|||||||+|.++..++.. ..+|+|+|+|+.+++.++++....+ ..+++++++|+.+... ..||.|++|
T Consensus 36 ~~~~VLEIG~G~G~LT~~Ll~~--~~~V~avEiD~~li~~l~~~~~~~~~~~~v~ii~~Dal~~~~-----~~~d~VvaN 108 (294)
T PTZ00338 36 PTDTVLEIGPGTGNLTEKLLQL--AKKVIAIEIDPRMVAELKKRFQNSPLASKLEVIEGDALKTEF-----PYFDVCVAN 108 (294)
T ss_pred CcCEEEEecCchHHHHHHHHHh--CCcEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECCHhhhcc-----cccCEEEec
Confidence 4789999999999999998875 4689999999999999999988766 4589999999987643 468999999
Q ss_pred C
Q 022962 200 A 200 (289)
Q Consensus 200 ~ 200 (289)
.
T Consensus 109 l 109 (294)
T PTZ00338 109 V 109 (294)
T ss_pred C
Confidence 4
No 178
>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]
Probab=98.93 E-value=3e-08 Score=90.94 Aligned_cols=137 Identities=15% Similarity=0.093 Sum_probs=104.6
Q ss_pred CCCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEec-cccccCCCCcCCCCceEEEE
Q 022962 120 NSNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRG-RAETLGKDVSFREQYDVAVA 198 (289)
Q Consensus 120 ~~~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~-d~~~~~~~~~~~~~fD~V~s 198 (289)
..|..|||==||||.+.+..... +++++|+|++.+|+.-|+.|.+.++++...++.. |+..++.. +++||.|++
T Consensus 196 ~~G~~vlDPFcGTGgiLiEagl~--G~~viG~Did~~mv~gak~Nl~~y~i~~~~~~~~~Da~~lpl~---~~~vdaIat 270 (347)
T COG1041 196 KRGELVLDPFCGTGGILIEAGLM--GARVIGSDIDERMVRGAKINLEYYGIEDYPVLKVLDATNLPLR---DNSVDAIAT 270 (347)
T ss_pred ccCCEeecCcCCccHHHHhhhhc--CceEeecchHHHHHhhhhhhhhhhCcCceeEEEecccccCCCC---CCccceEEe
Confidence 35889999999999988886644 7899999999999999999999999888877777 99998754 246999999
Q ss_pred cC---------cc----cHHHHHHHHccccccCeEEEEEEcCCcHHHHHHHHHHHHHhCCeEeEEeeeecCCCCCceEEE
Q 022962 199 RA---------VA----EMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLLQLCSVESQSPFGQRTAV 265 (289)
Q Consensus 199 n~---------~~----~~~~ll~~~~~~LkpgG~l~~~~g~~~~~ei~~~~~~l~~~g~~~~~~~~~~~~~~~~~r~lv 265 (289)
.+ .. =+..+++.+.++|++||++++..+.+..++ +...||+++.......+. .-.|.+.
T Consensus 271 DPPYGrst~~~~~~l~~Ly~~~le~~~evLk~gG~~vf~~p~~~~~~-------~~~~~f~v~~~~~~~~H~-sLtR~i~ 342 (347)
T COG1041 271 DPPYGRSTKIKGEGLDELYEEALESASEVLKPGGRIVFAAPRDPRHE-------LEELGFKVLGRFTMRVHG-SLTRVIY 342 (347)
T ss_pred cCCCCcccccccccHHHHHHHHHHHHHHHhhcCcEEEEecCCcchhh-------HhhcCceEEEEEEEeecC-ceEEEEE
Confidence 83 11 268899999999999999998776333333 336899988776543121 1235555
Q ss_pred EEEe
Q 022962 266 VCLK 269 (289)
Q Consensus 266 ~~~k 269 (289)
++++
T Consensus 343 v~~~ 346 (347)
T COG1041 343 VVRK 346 (347)
T ss_pred EEec
Confidence 5543
No 179
>COG2520 Predicted methyltransferase [General function prediction only]
Probab=98.93 E-value=3.5e-08 Score=90.91 Aligned_cols=103 Identities=16% Similarity=0.202 Sum_probs=90.1
Q ss_pred CCCCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCC-EEEEeccccccCCCCcCCCCceEEE
Q 022962 119 CNSNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLN-VQIVRGRAETLGKDVSFREQYDVAV 197 (289)
Q Consensus 119 ~~~~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~n-i~~~~~d~~~~~~~~~~~~~fD~V~ 197 (289)
...|.+|+|+=||-|.+++.+|... ..+|+|+|+|+.++.++++|++.|++.+ |+.+++|..++.... +.||-|+
T Consensus 186 v~~GE~V~DmFAGVGpfsi~~Ak~g-~~~V~A~diNP~A~~~L~eNi~LN~v~~~v~~i~gD~rev~~~~---~~aDrIi 261 (341)
T COG2520 186 VKEGETVLDMFAGVGPFSIPIAKKG-RPKVYAIDINPDAVEYLKENIRLNKVEGRVEPILGDAREVAPEL---GVADRII 261 (341)
T ss_pred hcCCCEEEEccCCcccchhhhhhcC-CceEEEEecCHHHHHHHHHHHHhcCccceeeEEeccHHHhhhcc---ccCCEEE
Confidence 4458999999999999999999763 4459999999999999999999999987 999999999986532 6799999
Q ss_pred EcCcccHHHHHHHHccccccCeEEEEEE
Q 022962 198 ARAVAEMRILAEYCLPLVRVGGLFVAAK 225 (289)
Q Consensus 198 sn~~~~~~~ll~~~~~~LkpgG~l~~~~ 225 (289)
++-...-..++..+.+.+++||.+-+..
T Consensus 262 m~~p~~a~~fl~~A~~~~k~~g~iHyy~ 289 (341)
T COG2520 262 MGLPKSAHEFLPLALELLKDGGIIHYYE 289 (341)
T ss_pred eCCCCcchhhHHHHHHHhhcCcEEEEEe
Confidence 9988877889999999999999987654
No 180
>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.93 E-value=1.2e-09 Score=87.72 Aligned_cols=74 Identities=15% Similarity=0.218 Sum_probs=64.1
Q ss_pred CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCcCCCCceEEEEcC
Q 022962 122 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARA 200 (289)
Q Consensus 122 ~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~~~~~fD~V~sn~ 200 (289)
|.+++|+|||+|.+++..+. +....|.|+|+++++++.++.|++++.+ ++.++++|+.++... .+.||.++.|.
T Consensus 49 gkkl~DLgcgcGmLs~a~sm-~~~e~vlGfDIdpeALEIf~rNaeEfEv-qidlLqcdildle~~---~g~fDtaviNp 122 (185)
T KOG3420|consen 49 GKKLKDLGCGCGMLSIAFSM-PKNESVLGFDIDPEALEIFTRNAEEFEV-QIDLLQCDILDLELK---GGIFDTAVINP 122 (185)
T ss_pred CcchhhhcCchhhhHHHhhc-CCCceEEeeecCHHHHHHHhhchHHhhh-hhheeeeeccchhcc---CCeEeeEEecC
Confidence 88999999999998866553 3456899999999999999999999988 589999999998654 37899999994
No 181
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=98.93 E-value=7.3e-09 Score=91.56 Aligned_cols=92 Identities=22% Similarity=0.258 Sum_probs=74.9
Q ss_pred CCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCcCCCCceEEEEcC
Q 022962 121 SNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARA 200 (289)
Q Consensus 121 ~~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~~~~~fD~V~sn~ 200 (289)
...+|+|||+|+|.++..+++.+|+.+++..|. +..++.+++ .++|+++.+|+.+ + ++. +|+++.+.
T Consensus 100 ~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~v~~~~~~------~~rv~~~~gd~f~-~----~P~-~D~~~l~~ 166 (241)
T PF00891_consen 100 GFKTVVDVGGGSGHFAIALARAYPNLRATVFDL-PEVIEQAKE------ADRVEFVPGDFFD-P----LPV-ADVYLLRH 166 (241)
T ss_dssp TSSEEEEET-TTSHHHHHHHHHSTTSEEEEEE--HHHHCCHHH------TTTEEEEES-TTT-C----CSS-ESEEEEES
T ss_pred CccEEEeccCcchHHHHHHHHHCCCCcceeecc-Hhhhhcccc------ccccccccccHHh-h----hcc-ccceeeeh
Confidence 456899999999999999999999999999998 777777777 4589999999973 2 235 99999874
Q ss_pred c------ccHHHHHHHHccccccC--eEEEEEE
Q 022962 201 V------AEMRILAEYCLPLVRVG--GLFVAAK 225 (289)
Q Consensus 201 ~------~~~~~ll~~~~~~Lkpg--G~l~~~~ 225 (289)
+ .....+|+.++..|+|| |++++..
T Consensus 167 vLh~~~d~~~~~iL~~~~~al~pg~~g~llI~e 199 (241)
T PF00891_consen 167 VLHDWSDEDCVKILRNAAAALKPGKDGRLLIIE 199 (241)
T ss_dssp SGGGS-HHHHHHHHHHHHHHSEECTTEEEEEEE
T ss_pred hhhhcchHHHHHHHHHHHHHhCCCCCCeEEEEe
Confidence 3 34678999999999999 9999764
No 182
>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.
Probab=98.92 E-value=2.7e-08 Score=85.10 Aligned_cols=126 Identities=18% Similarity=0.183 Sum_probs=79.7
Q ss_pred CCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCcCCCCceEEEEc-
Q 022962 121 SNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVAR- 199 (289)
Q Consensus 121 ~~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~~~~~fD~V~sn- 199 (289)
++..|.|+|||.+.++-.+. ...+|+..|+-.. |-.+..+|+..+|.+ +++.|++++.
T Consensus 72 ~~~viaD~GCGdA~la~~~~---~~~~V~SfDLva~---------------n~~Vtacdia~vPL~---~~svDv~VfcL 130 (219)
T PF05148_consen 72 KSLVIADFGCGDAKLAKAVP---NKHKVHSFDLVAP---------------NPRVTACDIANVPLE---DESVDVAVFCL 130 (219)
T ss_dssp TTS-EEEES-TT-HHHHH-----S---EEEEESS-S---------------STTEEES-TTS-S-----TT-EEEEEEES
T ss_pred CCEEEEECCCchHHHHHhcc---cCceEEEeeccCC---------------CCCEEEecCccCcCC---CCceeEEEEEh
Confidence 36789999999998663332 2458999998431 223567899888875 4889999965
Q ss_pred Cc--ccHHHHHHHHccccccCeEEEEEEcCCcHHHHHHHHHHHHHhCCeEeEEeeeecCCCCCceEEEEEEecCC
Q 022962 200 AV--AEMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLLQLCSVESQSPFGQRTAVVCLKSRR 272 (289)
Q Consensus 200 ~~--~~~~~ll~~~~~~LkpgG~l~~~~g~~~~~ei~~~~~~l~~~g~~~~~~~~~~~~~~~~~r~lv~~~k~~~ 272 (289)
++ -++..+++++.|+|||||.|.+..-..+-+.+....+.++..||++.... .....-.++.++|...
T Consensus 131 SLMGTn~~~fi~EA~RvLK~~G~L~IAEV~SRf~~~~~F~~~~~~~GF~~~~~d-----~~n~~F~~f~F~K~~~ 200 (219)
T PF05148_consen 131 SLMGTNWPDFIREANRVLKPGGILKIAEVKSRFENVKQFIKALKKLGFKLKSKD-----ESNKHFVLFEFKKIRK 200 (219)
T ss_dssp ---SS-HHHHHHHHHHHEEEEEEEEEEEEGGG-S-HHHHHHHHHCTTEEEEEEE-------STTEEEEEEEE-SS
T ss_pred hhhCCCcHHHHHHHHheeccCcEEEEEEecccCcCHHHHHHHHHHCCCeEEecc-----cCCCeEEEEEEEEcCc
Confidence 43 47999999999999999999987655555566777778889999887642 1235567777777654
No 183
>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]
Probab=98.92 E-value=4.9e-08 Score=85.55 Aligned_cols=129 Identities=20% Similarity=0.226 Sum_probs=94.7
Q ss_pred CCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCcCCCCceEEEEc-
Q 022962 121 SNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVAR- 199 (289)
Q Consensus 121 ~~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~~~~~fD~V~sn- 199 (289)
+...|.|+|||-+-++. . -..+|+..|+-+ -|-+++.+|+.+++.+ +++.|++++.
T Consensus 180 ~~~vIaD~GCGEakiA~----~-~~~kV~SfDL~a---------------~~~~V~~cDm~~vPl~---d~svDvaV~CL 236 (325)
T KOG3045|consen 180 KNIVIADFGCGEAKIAS----S-ERHKVHSFDLVA---------------VNERVIACDMRNVPLE---DESVDVAVFCL 236 (325)
T ss_pred CceEEEecccchhhhhh----c-cccceeeeeeec---------------CCCceeeccccCCcCc---cCcccEEEeeH
Confidence 46789999999997544 2 235899999732 1456677899998765 4899999865
Q ss_pred C--cccHHHHHHHHccccccCeEEEEEEcCCcHHHHHHHHHHHHHhCCeEeEEeeeecCCCCCceEEEEEEecCCCCCCC
Q 022962 200 A--VAEMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLLQLCSVESQSPFGQRTAVVCLKSRRTPKKY 277 (289)
Q Consensus 200 ~--~~~~~~ll~~~~~~LkpgG~l~~~~g~~~~~ei~~~~~~l~~~g~~~~~~~~~~~~~~~~~r~lv~~~k~~~~p~~~ 277 (289)
+ ..++..+++++.|+|++||.+++..-...-+++.....++...||.+.... + ....-+++.+.|... ++-
T Consensus 237 SLMgtn~~df~kEa~RiLk~gG~l~IAEv~SRf~dv~~f~r~l~~lGF~~~~~d-~----~n~~F~lfefkK~~~--~k~ 309 (325)
T KOG3045|consen 237 SLMGTNLADFIKEANRILKPGGLLYIAEVKSRFSDVKGFVRALTKLGFDVKHKD-V----SNKYFTLFEFKKTPK--PKA 309 (325)
T ss_pred hhhcccHHHHHHHHHHHhccCceEEEEehhhhcccHHHHHHHHHHcCCeeeehh-h----hcceEEEEEEecCCc--ccc
Confidence 3 458999999999999999999987655566677778888999999876553 1 234556666766543 444
Q ss_pred CC
Q 022962 278 PR 279 (289)
Q Consensus 278 pr 279 (289)
|+
T Consensus 310 ~k 311 (325)
T KOG3045|consen 310 PK 311 (325)
T ss_pred cc
Confidence 44
No 184
>KOG3010 consensus Methyltransferase [General function prediction only]
Probab=98.92 E-value=1e-09 Score=95.12 Aligned_cols=95 Identities=17% Similarity=0.117 Sum_probs=69.0
Q ss_pred eEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCC-CCEEEEeccccccCCCCcCCCCceEEEEcC--
Q 022962 124 KLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQL-LNVQIVRGRAETLGKDVSFREQYDVAVARA-- 200 (289)
Q Consensus 124 ~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l-~ni~~~~~d~~~~~~~~~~~~~fD~V~sn~-- 200 (289)
.++|+|||+|.-++.+|..+ .+|+|+|+|++|++.|++.-..... ...++...+..++... +++.|+|+|-.
T Consensus 36 ~a~DvG~G~Gqa~~~iae~~--k~VIatD~s~~mL~~a~k~~~~~y~~t~~~ms~~~~v~L~g~---e~SVDlI~~Aqa~ 110 (261)
T KOG3010|consen 36 LAWDVGTGNGQAARGIAEHY--KEVIATDVSEAMLKVAKKHPPVTYCHTPSTMSSDEMVDLLGG---EESVDLITAAQAV 110 (261)
T ss_pred eEEEeccCCCcchHHHHHhh--hhheeecCCHHHHHHhhcCCCcccccCCccccccccccccCC---CcceeeehhhhhH
Confidence 89999999998778888664 4899999999999988874322211 1134444444444322 48999999863
Q ss_pred -cccHHHHHHHHccccccCe-EEEE
Q 022962 201 -VAEMRILAEYCLPLVRVGG-LFVA 223 (289)
Q Consensus 201 -~~~~~~ll~~~~~~LkpgG-~l~~ 223 (289)
.-+.+++.+.++++||++| .+.+
T Consensus 111 HWFdle~fy~~~~rvLRk~Gg~iav 135 (261)
T KOG3010|consen 111 HWFDLERFYKEAYRVLRKDGGLIAV 135 (261)
T ss_pred HhhchHHHHHHHHHHcCCCCCEEEE
Confidence 3478999999999999887 4443
No 185
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=98.92 E-value=7.2e-09 Score=86.12 Aligned_cols=74 Identities=14% Similarity=0.096 Sum_probs=61.3
Q ss_pred EEEeCChHHHHHHHHHHHHcC---CCCEEEEeccccccCCCCcCCCCceEEEEcC----cccHHHHHHHHccccccCeEE
Q 022962 149 TLLESMNKRCVFLEHAVSLTQ---LLNVQIVRGRAETLGKDVSFREQYDVAVARA----VAEMRILAEYCLPLVRVGGLF 221 (289)
Q Consensus 149 ~~iD~s~~~l~~a~~~~~~~~---l~ni~~~~~d~~~~~~~~~~~~~fD~V~sn~----~~~~~~ll~~~~~~LkpgG~l 221 (289)
+|+|+|+.|++.|+++.+..+ ..+++++++|+++++.. +++||+|++.. +.+...+++++.++|||||.+
T Consensus 1 ~GvD~S~~ML~~A~~~~~~~~~~~~~~i~~~~~d~~~lp~~---~~~fD~v~~~~~l~~~~d~~~~l~ei~rvLkpGG~l 77 (160)
T PLN02232 1 MGLDFSSEQLAVAATRQSLKARSCYKCIEWIEGDAIDLPFD---DCEFDAVTMGYGLRNVVDRLRAMKEMYRVLKPGSRV 77 (160)
T ss_pred CeEcCCHHHHHHHHHhhhcccccCCCceEEEEechhhCCCC---CCCeeEEEecchhhcCCCHHHHHHHHHHHcCcCeEE
Confidence 589999999999987655322 34799999999998754 37899999873 567899999999999999999
Q ss_pred EEEE
Q 022962 222 VAAK 225 (289)
Q Consensus 222 ~~~~ 225 (289)
++..
T Consensus 78 ~i~d 81 (160)
T PLN02232 78 SILD 81 (160)
T ss_pred EEEE
Confidence 8654
No 186
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=98.89 E-value=1.1e-08 Score=92.89 Aligned_cols=77 Identities=10% Similarity=0.022 Sum_probs=63.1
Q ss_pred CCCeEEEEcCCCChHHHHHHHHCC-CCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCcC-CCCceEEEE
Q 022962 121 SNLKLVDVGTGAGLPGLVLAIACP-DWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSF-REQYDVAVA 198 (289)
Q Consensus 121 ~~~~VLDiGcG~G~~~l~la~~~p-~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~~-~~~fD~V~s 198 (289)
++..++|.+||.|..+..++...+ .++|+|+|.|+.+++.+++.... .++++++++|..++...... -.++|.|++
T Consensus 19 pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~--~~ri~~i~~~f~~l~~~l~~~~~~vDgIl~ 96 (296)
T PRK00050 19 PDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKP--FGRFTLVHGNFSNLKEVLAEGLGKVDGILL 96 (296)
T ss_pred CCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhcc--CCcEEEEeCCHHHHHHHHHcCCCccCEEEE
Confidence 477999999999999999998875 68999999999999999987765 45799999999886432110 027999998
Q ss_pred c
Q 022962 199 R 199 (289)
Q Consensus 199 n 199 (289)
+
T Consensus 97 D 97 (296)
T PRK00050 97 D 97 (296)
T ss_pred C
Confidence 7
No 187
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=98.88 E-value=5.2e-08 Score=86.92 Aligned_cols=71 Identities=20% Similarity=0.243 Sum_probs=59.0
Q ss_pred CCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCcCCCCce---EEE
Q 022962 121 SNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYD---VAV 197 (289)
Q Consensus 121 ~~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~~~~~fD---~V~ 197 (289)
++.+|||||||+|.++..++... .+|+++|+|+.+++.++++... ..+++++++|+.+++.. .|| +|+
T Consensus 29 ~~~~VLEiG~G~G~lt~~L~~~~--~~v~~iE~d~~~~~~l~~~~~~--~~~v~v~~~D~~~~~~~-----~~d~~~~vv 99 (253)
T TIGR00755 29 EGDVVLEIGPGLGALTEPLLKRA--KKVTAIEIDPRLAEILRKLLSL--YERLEVIEGDALKVDLP-----DFPKQLKVV 99 (253)
T ss_pred CcCEEEEeCCCCCHHHHHHHHhC--CcEEEEECCHHHHHHHHHHhCc--CCcEEEEECchhcCChh-----HcCCcceEE
Confidence 47899999999999999999875 4699999999999999887643 35799999999887642 355 899
Q ss_pred EcC
Q 022962 198 ARA 200 (289)
Q Consensus 198 sn~ 200 (289)
+|-
T Consensus 100 sNl 102 (253)
T TIGR00755 100 SNL 102 (253)
T ss_pred EcC
Confidence 984
No 188
>COG2521 Predicted archaeal methyltransferase [General function prediction only]
Probab=98.86 E-value=4.3e-09 Score=90.87 Aligned_cols=130 Identities=15% Similarity=0.166 Sum_probs=96.7
Q ss_pred CCCCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCC--CCEEEEeccccccCCCCcCCCCceEE
Q 022962 119 CNSNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQL--LNVQIVRGRAETLGKDVSFREQYDVA 196 (289)
Q Consensus 119 ~~~~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l--~ni~~~~~d~~~~~~~~~~~~~fD~V 196 (289)
.+.+.+|||.|+|-|+.++..+.. ...+|+.+|.++..++.|.-|-=.-++ .+|+++.+|+.++-.. ..+++||+|
T Consensus 132 ~~~G~rVLDtC~GLGYtAi~a~~r-GA~~VitvEkdp~VLeLa~lNPwSr~l~~~~i~iilGD~~e~V~~-~~D~sfDaI 209 (287)
T COG2521 132 VKRGERVLDTCTGLGYTAIEALER-GAIHVITVEKDPNVLELAKLNPWSRELFEIAIKIILGDAYEVVKD-FDDESFDAI 209 (287)
T ss_pred cccCCEeeeeccCccHHHHHHHHc-CCcEEEEEeeCCCeEEeeccCCCCccccccccEEecccHHHHHhc-CCccccceE
Confidence 345899999999999999886644 455999999999999888765322222 2589999999886543 125789999
Q ss_pred EEcC----cc---cHHHHHHHHccccccCeEEEEEEcCCc-----HHHHHHHHHHHHHhCCeEeEE
Q 022962 197 VARA----VA---EMRILAEYCLPLVRVGGLFVAAKGHDP-----QEEVKNSERAVQLMGASLLQL 250 (289)
Q Consensus 197 ~sn~----~~---~~~~ll~~~~~~LkpgG~l~~~~g~~~-----~~ei~~~~~~l~~~g~~~~~~ 250 (289)
+-.. .+ --+++.++++++|||||.++-+.|... ..-...+++.|++.||..++.
T Consensus 210 iHDPPRfS~AgeLYseefY~El~RiLkrgGrlFHYvG~Pg~ryrG~d~~~gVa~RLr~vGF~~v~~ 275 (287)
T COG2521 210 IHDPPRFSLAGELYSEEFYRELYRILKRGGRLFHYVGNPGKRYRGLDLPKGVAERLRRVGFEVVKK 275 (287)
T ss_pred eeCCCccchhhhHhHHHHHHHHHHHcCcCCcEEEEeCCCCcccccCChhHHHHHHHHhcCceeeee
Confidence 9874 11 136889999999999999998876321 222355677888999986554
No 189
>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]
Probab=98.83 E-value=6.6e-08 Score=90.42 Aligned_cols=110 Identities=20% Similarity=0.205 Sum_probs=88.1
Q ss_pred CCCCCCeEEEEcCCCChHHHHHHHHCCC--CEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCcCCCCceE
Q 022962 118 SCNSNLKLVDVGTGAGLPGLVLAIACPD--WKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDV 195 (289)
Q Consensus 118 ~~~~~~~VLDiGcG~G~~~l~la~~~p~--~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~~~~~fD~ 195 (289)
+.++|.+|||+|++.|.=+..+|+..++ ..|+|+|+++..+..+++|++++|+.|+.+++.|...+.......++||.
T Consensus 153 ~p~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG~~nv~~~~~d~~~~~~~~~~~~~fD~ 232 (355)
T COG0144 153 DPKPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLGVRNVIVVNKDARRLAELLPGGEKFDR 232 (355)
T ss_pred CCCCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcCCCceEEEecccccccccccccCcCcE
Confidence 4567899999999999999888887653 56799999999999999999999999988888887755432211236999
Q ss_pred EEEcC-------------------------ccc-HHHHHHHHccccccCeEEEEEEcC
Q 022962 196 AVARA-------------------------VAE-MRILAEYCLPLVRVGGLFVAAKGH 227 (289)
Q Consensus 196 V~sn~-------------------------~~~-~~~ll~~~~~~LkpgG~l~~~~g~ 227 (289)
|+..+ .+. -.++|+.+.++|||||.++...-.
T Consensus 233 iLlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~GG~LVYSTCS 290 (355)
T COG0144 233 ILLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKPGGVLVYSTCS 290 (355)
T ss_pred EEECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEccC
Confidence 99873 111 368999999999999999976543
No 190
>KOG2361 consensus Predicted methyltransferase [General function prediction only]
Probab=98.81 E-value=6.6e-09 Score=90.16 Aligned_cols=101 Identities=16% Similarity=0.207 Sum_probs=77.4
Q ss_pred CeEEEEcCCCChHHHHHHHHCCC--CEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccC-CCCcCCCCceEEEEc
Q 022962 123 LKLVDVGTGAGLPGLVLAIACPD--WKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLG-KDVSFREQYDVAVAR 199 (289)
Q Consensus 123 ~~VLDiGcG~G~~~l~la~~~p~--~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~-~~~~~~~~fD~V~sn 199 (289)
.+||+||||.|.....+.+..|+ .+|+++|.|+.+++..+++..... +++.....|+..-. ......+++|.|++-
T Consensus 73 ~~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai~~vk~~~~~~e-~~~~afv~Dlt~~~~~~~~~~~svD~it~I 151 (264)
T KOG2361|consen 73 ETILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAIELVKKSSGYDE-SRVEAFVWDLTSPSLKEPPEEGSVDIITLI 151 (264)
T ss_pred hhheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHHHHHHhccccch-hhhcccceeccchhccCCCCcCccceEEEE
Confidence 38999999999999998887766 999999999999999998766543 34544444554322 111235789999875
Q ss_pred ----Cc--ccHHHHHHHHccccccCeEEEEE
Q 022962 200 ----AV--AEMRILAEYCLPLVRVGGLFVAA 224 (289)
Q Consensus 200 ----~~--~~~~~ll~~~~~~LkpgG~l~~~ 224 (289)
|+ ..+...++.+.++|||||.+++-
T Consensus 152 FvLSAi~pek~~~a~~nl~~llKPGG~llfr 182 (264)
T KOG2361|consen 152 FVLSAIHPEKMQSVIKNLRTLLKPGGSLLFR 182 (264)
T ss_pred EEEeccChHHHHHHHHHHHHHhCCCcEEEEe
Confidence 33 35789999999999999999975
No 191
>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]. Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.
Probab=98.81 E-value=1.1e-08 Score=84.90 Aligned_cols=74 Identities=18% Similarity=0.174 Sum_probs=56.0
Q ss_pred eEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCC-CEEEEeccccccCCCCcCCCCceEEEEc
Q 022962 124 KLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLL-NVQIVRGRAETLGKDVSFREQYDVAVAR 199 (289)
Q Consensus 124 ~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~-ni~~~~~d~~~~~~~~~~~~~fD~V~sn 199 (289)
.|+|+.||.|..++.+|+. ..+|+|||+++..++.|+.|++.+|.. +|+++++|+.++.........||+|++.
T Consensus 2 ~vlD~fcG~GGNtIqFA~~--~~~Viaidid~~~~~~a~hNa~vYGv~~~I~~i~gD~~~~~~~~~~~~~~D~vFlS 76 (163)
T PF09445_consen 2 TVLDAFCGVGGNTIQFART--FDRVIAIDIDPERLECAKHNAEVYGVADNIDFICGDFFELLKRLKSNKIFDVVFLS 76 (163)
T ss_dssp EEEETT-TTSHHHHHHHHT--T-EEEEEES-HHHHHHHHHHHHHTT-GGGEEEEES-HHHHGGGB------SEEEE-
T ss_pred EEEEeccCcCHHHHHHHHh--CCeEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCCHHHHHhhccccccccEEEEC
Confidence 6999999999999999987 458999999999999999999999964 7999999999875431111228999987
No 192
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=98.80 E-value=2.2e-07 Score=82.66 Aligned_cols=137 Identities=17% Similarity=0.144 Sum_probs=97.0
Q ss_pred CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcC----CCCEEEEeccccccCCCCcCCC-CceEE
Q 022962 122 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQ----LLNVQIVRGRAETLGKDVSFRE-QYDVA 196 (289)
Q Consensus 122 ~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~----l~ni~~~~~d~~~~~~~~~~~~-~fD~V 196 (289)
..+||=||-|.|..+..+.+..+..+|++||+++..++.|++...... -++++++.+|...+-.. ..+ +||+|
T Consensus 77 p~~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~~--~~~~~yDvI 154 (246)
T PF01564_consen 77 PKRVLIIGGGDGGTARELLKHPPVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKFLKE--TQEEKYDVI 154 (246)
T ss_dssp T-EEEEEESTTSHHHHHHTTSTT-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHHT--SSST-EEEE
T ss_pred cCceEEEcCCChhhhhhhhhcCCcceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHHHHHh--ccCCcccEE
Confidence 679999999999988887755446799999999999999999655432 24799999999886432 124 89999
Q ss_pred EEcCcc--------cHHHHHHHHccccccCeEEEEEEc--CCcHHHHHHHHHHHHHhCCeEeEEeeeecCCCCCc
Q 022962 197 VARAVA--------EMRILAEYCLPLVRVGGLFVAAKG--HDPQEEVKNSERAVQLMGASLLQLCSVESQSPFGQ 261 (289)
Q Consensus 197 ~sn~~~--------~~~~ll~~~~~~LkpgG~l~~~~g--~~~~~ei~~~~~~l~~~g~~~~~~~~~~~~~~~~~ 261 (289)
+..... --.++++.+.+.|+|||.+++-.+ ......+..+.+.++.... .+.......|.-...
T Consensus 155 i~D~~dp~~~~~~l~t~ef~~~~~~~L~~~Gv~v~~~~~~~~~~~~~~~i~~tl~~~F~-~v~~~~~~vP~~~~~ 228 (246)
T PF01564_consen 155 IVDLTDPDGPAPNLFTREFYQLCKRRLKPDGVLVLQAGSPFLHPELFKSILKTLRSVFP-QVKPYTAYVPSYGSG 228 (246)
T ss_dssp EEESSSTTSCGGGGSSHHHHHHHHHHEEEEEEEEEEEEETTTTHHHHHHHHHHHHTTSS-EEEEEEEECTTSCSS
T ss_pred EEeCCCCCCCcccccCHHHHHHHHhhcCCCcEEEEEccCcccchHHHHHHHHHHHHhCC-ceEEEEEEcCeeccc
Confidence 987432 137899999999999999997543 3445666777777777666 333333334544444
No 193
>COG4076 Predicted RNA methylase [General function prediction only]
Probab=98.80 E-value=6.1e-09 Score=87.10 Aligned_cols=94 Identities=22% Similarity=0.300 Sum_probs=78.4
Q ss_pred CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCcCCCCceEEEEcCc
Q 022962 122 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARAV 201 (289)
Q Consensus 122 ~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~~~~~fD~V~sn~~ 201 (289)
.+.+.|+|+|||.+++..|.+ .-+|+|||.+++..+.|.+|..-.|..|++++.+|+.++.. +..|+|+|--.
T Consensus 33 ~d~~~DLGaGsGiLs~~Aa~~--A~rViAiE~dPk~a~~a~eN~~v~g~~n~evv~gDA~~y~f-----e~ADvvicEml 105 (252)
T COG4076 33 EDTFADLGAGSGILSVVAAHA--AERVIAIEKDPKRARLAEENLHVPGDVNWEVVVGDARDYDF-----ENADVVICEML 105 (252)
T ss_pred hhceeeccCCcchHHHHHHhh--hceEEEEecCcHHHHHhhhcCCCCCCcceEEEecccccccc-----cccceeHHHHh
Confidence 357899999999999888765 67999999999999999999988899899999999999865 46899999732
Q ss_pred ------ccHHHHHHHHccccccCeEEE
Q 022962 202 ------AEMRILAEYCLPLVRVGGLFV 222 (289)
Q Consensus 202 ------~~~~~ll~~~~~~LkpgG~l~ 222 (289)
.....++..+..+|+.+|.++
T Consensus 106 DTaLi~E~qVpV~n~vleFLr~d~tii 132 (252)
T COG4076 106 DTALIEEKQVPVINAVLEFLRYDPTII 132 (252)
T ss_pred hHHhhcccccHHHHHHHHHhhcCCccc
Confidence 223455666666899999887
No 194
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=98.79 E-value=1.4e-07 Score=85.12 Aligned_cols=144 Identities=17% Similarity=0.170 Sum_probs=106.5
Q ss_pred CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcC----CCCEEEEeccccccCCCCcCCCCceEEE
Q 022962 122 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQ----LLNVQIVRGRAETLGKDVSFREQYDVAV 197 (289)
Q Consensus 122 ~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~----l~ni~~~~~d~~~~~~~~~~~~~fD~V~ 197 (289)
..+||=||-|.|..+-.+.+..+-.+++.||++++.++.+++...... -++++++.+|..++-.. ..++||+|+
T Consensus 77 pk~VLiiGgGdG~tlRevlkh~~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~--~~~~fDvIi 154 (282)
T COG0421 77 PKRVLIIGGGDGGTLREVLKHLPVERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEFLRD--CEEKFDVII 154 (282)
T ss_pred CCeEEEECCCccHHHHHHHhcCCcceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHHHHHh--CCCcCCEEE
Confidence 359999999999999888877777899999999999999999765543 24689999999886543 235899999
Q ss_pred EcCccc--------HHHHHHHHccccccCeEEEEEEcC--CcHHHHHHHHHHHHHhCCeEeEEeeeecCCCCCc-eEEEE
Q 022962 198 ARAVAE--------MRILAEYCLPLVRVGGLFVAAKGH--DPQEEVKNSERAVQLMGASLLQLCSVESQSPFGQ-RTAVV 266 (289)
Q Consensus 198 sn~~~~--------~~~ll~~~~~~LkpgG~l~~~~g~--~~~~ei~~~~~~l~~~g~~~~~~~~~~~~~~~~~-r~lv~ 266 (289)
+....+ -..+++.|.+.|+++|.++.-.+. .+.+++..+.+.++.. |..........|.-.++ +..++
T Consensus 155 ~D~tdp~gp~~~Lft~eFy~~~~~~L~~~Gi~v~q~~~~~~~~~~~~~~~~~~~~v-f~~~~~~~~~ipt~~~g~~~f~~ 233 (282)
T COG0421 155 VDSTDPVGPAEALFTEEFYEGCRRALKEDGIFVAQAGSPFLQDEEIALAYRNVSRV-FSIVPPYVAPIPTYPSGFWGFIV 233 (282)
T ss_pred EcCCCCCCcccccCCHHHHHHHHHhcCCCcEEEEecCCcccchHHHHHHHHHHHhh-ccccccceeccceecCCceEEEE
Confidence 985432 389999999999999999987543 2345667777777766 66555544434444444 33444
Q ss_pred EE
Q 022962 267 CL 268 (289)
Q Consensus 267 ~~ 268 (289)
..
T Consensus 234 ~s 235 (282)
T COG0421 234 AS 235 (282)
T ss_pred ee
Confidence 43
No 195
>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]. It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....
Probab=98.79 E-value=7.5e-07 Score=76.99 Aligned_cols=145 Identities=20% Similarity=0.187 Sum_probs=99.2
Q ss_pred CCCCCeEEEEcCCCChHHHHHHHHC-CCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCcCCCCceEEE
Q 022962 119 CNSNLKLVDVGTGAGLPGLVLAIAC-PDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAV 197 (289)
Q Consensus 119 ~~~~~~VLDiGcG~G~~~l~la~~~-p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~~~~~fD~V~ 197 (289)
+++|.+||-+|..+|.----++... +.+.|+|||.|+.....+-..+++- +||-.+..|+.....-...-+.+|+|+
T Consensus 71 ik~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~R--~NIiPIl~DAr~P~~Y~~lv~~VDvI~ 148 (229)
T PF01269_consen 71 IKPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKKR--PNIIPILEDARHPEKYRMLVEMVDVIF 148 (229)
T ss_dssp --TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHS--TTEEEEES-TTSGGGGTTTS--EEEEE
T ss_pred CCCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhccC--CceeeeeccCCChHHhhcccccccEEE
Confidence 4468999999999999777777654 5899999999997766666555543 489999999976433222336899999
Q ss_pred Ec-Cc-ccHHHHHHHHccccccCeEEEEEEc-------CCcHHHHHHHHHHHHHhCCeEeEEeeeecCCCCCceEEEEEE
Q 022962 198 AR-AV-AEMRILAEYCLPLVRVGGLFVAAKG-------HDPQEEVKNSERAVQLMGASLLQLCSVESQSPFGQRTAVVCL 268 (289)
Q Consensus 198 sn-~~-~~~~~ll~~~~~~LkpgG~l~~~~g-------~~~~~ei~~~~~~l~~~g~~~~~~~~~~~~~~~~~r~lv~~~ 268 (289)
+. +. ...+.++..+..+||+||.+++..- .+..+-+.+..+.+++.||++.+...++ |+...+++++.
T Consensus 149 ~DVaQp~Qa~I~~~Na~~fLk~gG~~~i~iKa~siD~t~~p~~vf~~e~~~L~~~~~~~~e~i~Le---Py~~dH~~vv~ 225 (229)
T PF01269_consen 149 QDVAQPDQARIAALNARHFLKPGGHLIISIKARSIDSTADPEEVFAEEVKKLKEEGFKPLEQITLE---PYERDHAMVVG 225 (229)
T ss_dssp EE-SSTTHHHHHHHHHHHHEEEEEEEEEEEEHHHH-SSSSHHHHHHHHHHHHHCTTCEEEEEEE-T---TTSTTEEEEEE
T ss_pred ecCCChHHHHHHHHHHHhhccCCcEEEEEEecCcccCcCCHHHHHHHHHHHHHHcCCChheEeccC---CCCCCcEEEEE
Confidence 98 33 3456777888899999999997641 1334445555666778899999887763 55444544443
No 196
>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.
Probab=98.77 E-value=1.3e-07 Score=83.52 Aligned_cols=122 Identities=16% Similarity=0.128 Sum_probs=88.8
Q ss_pred CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCcCCCCceEEEEcCc
Q 022962 122 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARAV 201 (289)
Q Consensus 122 ~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~~~~~fD~V~sn~~ 201 (289)
..++||||+|.|..+..++..+. +|++.|.|..|...+++ -| .+++ ++.++... +.+||+|.|-.+
T Consensus 95 ~~~lLDlGAGdG~VT~~l~~~f~--~v~aTE~S~~Mr~rL~~----kg---~~vl--~~~~w~~~---~~~fDvIscLNv 160 (265)
T PF05219_consen 95 DKSLLDLGAGDGEVTERLAPLFK--EVYATEASPPMRWRLSK----KG---FTVL--DIDDWQQT---DFKFDVISCLNV 160 (265)
T ss_pred CCceEEecCCCcHHHHHHHhhcc--eEEeecCCHHHHHHHHh----CC---CeEE--ehhhhhcc---CCceEEEeehhh
Confidence 56899999999999999987764 79999999998655544 23 3333 33333322 368999999754
Q ss_pred ----ccHHHHHHHHccccccCeEEEEE----------EcC---------------CcHHHHHHHHHHHHHhCCeEeEEee
Q 022962 202 ----AEMRILAEYCLPLVRVGGLFVAA----------KGH---------------DPQEEVKNSERAVQLMGASLLQLCS 252 (289)
Q Consensus 202 ----~~~~~ll~~~~~~LkpgG~l~~~----------~g~---------------~~~~ei~~~~~~l~~~g~~~~~~~~ 252 (289)
..+..+++.+++.|+|+|++++. .|. ..++.+..+.+.++..||++.....
T Consensus 161 LDRc~~P~~LL~~i~~~l~p~G~lilAvVlP~~pyVE~~~g~~~~P~e~l~~~g~~~E~~v~~l~~v~~p~GF~v~~~tr 240 (265)
T PF05219_consen 161 LDRCDRPLTLLRDIRRALKPNGRLILAVVLPFRPYVEFGGGKSNRPSELLPVKGATFEEQVSSLVNVFEPAGFEVERWTR 240 (265)
T ss_pred hhccCCHHHHHHHHHHHhCCCCEEEEEEEecccccEEcCCCCCCCchhhcCCCCCcHHHHHHHHHHHHHhcCCEEEEEec
Confidence 35789999999999999999842 232 1233455555778899999998887
Q ss_pred eecCC
Q 022962 253 VESQS 257 (289)
Q Consensus 253 ~~~~~ 257 (289)
++|-.
T Consensus 241 ~PYLc 245 (265)
T PF05219_consen 241 LPYLC 245 (265)
T ss_pred cCccc
Confidence 65543
No 197
>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=98.77 E-value=2.8e-08 Score=84.56 Aligned_cols=104 Identities=19% Similarity=0.242 Sum_probs=80.2
Q ss_pred CCCCCeEEEEcCCCChHHHHHHHHC--CCCEEEEEeCChHHHHHHHHHHHHcC----------CCCEEEEeccccccCCC
Q 022962 119 CNSNLKLVDVGTGAGLPGLVLAIAC--PDWKVTLLESMNKRCVFLEHAVSLTQ----------LLNVQIVRGRAETLGKD 186 (289)
Q Consensus 119 ~~~~~~VLDiGcG~G~~~l~la~~~--p~~~V~~iD~s~~~l~~a~~~~~~~~----------l~ni~~~~~d~~~~~~~ 186 (289)
+.+|.+.||+|+|||+++-.+++.. ++..++|||.-++.++.+++|++..- ..++.++.+|......+
T Consensus 80 L~pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~ivvGDgr~g~~e 159 (237)
T KOG1661|consen 80 LQPGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGELSIVVGDGRKGYAE 159 (237)
T ss_pred hccCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccCceEEEeCCccccCCc
Confidence 4469999999999999999999664 34445999999999999999887643 13588889998876554
Q ss_pred CcCCCCceEEEEcCcccHHHHHHHHccccccCeEEEEEEcC
Q 022962 187 VSFREQYDVAVARAVAEMRILAEYCLPLVRVGGLFVAAKGH 227 (289)
Q Consensus 187 ~~~~~~fD~V~sn~~~~~~~ll~~~~~~LkpgG~l~~~~g~ 227 (289)
..+||.|.+.|-+ ..+.++....|++||.+++..+.
T Consensus 160 ---~a~YDaIhvGAaa--~~~pq~l~dqL~~gGrllip~~~ 195 (237)
T KOG1661|consen 160 ---QAPYDAIHVGAAA--SELPQELLDQLKPGGRLLIPVGQ 195 (237)
T ss_pred ---cCCcceEEEccCc--cccHHHHHHhhccCCeEEEeecc
Confidence 3789999998533 23344444679999999987764
No 198
>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins.; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.
Probab=98.74 E-value=6.5e-07 Score=77.35 Aligned_cols=123 Identities=14% Similarity=0.073 Sum_probs=88.7
Q ss_pred EEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCC-CEEEEeccccccCCCCcCCCCceEEEEcCcc-
Q 022962 125 LVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLL-NVQIVRGRAETLGKDVSFREQYDVAVARAVA- 202 (289)
Q Consensus 125 VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~-ni~~~~~d~~~~~~~~~~~~~fD~V~sn~~~- 202 (289)
|.||||--|.+++.|.+.....+++++|+++.-++.|+++++..|+. +|++..+|-.+.-.+ .+..|.|+.-++.
T Consensus 1 vaDIGtDHgyLpi~L~~~~~~~~~ia~DI~~gpL~~A~~~i~~~~l~~~i~~rlgdGL~~l~~---~e~~d~ivIAGMGG 77 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKNGKAPKAIAVDINPGPLEKAKENIAKYGLEDRIEVRLGDGLEVLKP---GEDVDTIVIAGMGG 77 (205)
T ss_dssp EEEET-STTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTT-TTTEEEEE-SGGGG--G---GG---EEEEEEE-H
T ss_pred CceeccchhHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCcccEEEEECCcccccCC---CCCCCEEEEecCCH
Confidence 68999999999999998876678999999999999999999999976 499999996543221 1347888877554
Q ss_pred -cHHHHHHHHccccccCeEEEEEEcCCcHHHHHHHHHHHHHhCCeEeEEeeee
Q 022962 203 -EMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLLQLCSVE 254 (289)
Q Consensus 203 -~~~~ll~~~~~~LkpgG~l~~~~g~~~~~ei~~~~~~l~~~g~~~~~~~~~~ 254 (289)
.+..+++.....++....|++ .+......+.. .+..+||.+.+...+.
T Consensus 78 ~lI~~ILe~~~~~~~~~~~lIL-qP~~~~~~LR~---~L~~~gf~I~~E~lv~ 126 (205)
T PF04816_consen 78 ELIIEILEAGPEKLSSAKRLIL-QPNTHAYELRR---WLYENGFEIIDEDLVE 126 (205)
T ss_dssp HHHHHHHHHTGGGGTT--EEEE-EESS-HHHHHH---HHHHTTEEEEEEEEEE
T ss_pred HHHHHHHHhhHHHhccCCeEEE-eCCCChHHHHH---HHHHCCCEEEEeEEEe
Confidence 578889888888877667765 44455555544 5669999999887663
No 199
>KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.74 E-value=6.7e-08 Score=83.49 Aligned_cols=103 Identities=23% Similarity=0.269 Sum_probs=86.3
Q ss_pred CCCeEEEEcCCCChHHHHHHHHCC-CCEEEEEeCChHHHHHHHHHHHHcCCC-CEEEEecccccc-CCC--CcCCCCceE
Q 022962 121 SNLKLVDVGTGAGLPGLVLAIACP-DWKVTLLESMNKRCVFLEHAVSLTQLL-NVQIVRGRAETL-GKD--VSFREQYDV 195 (289)
Q Consensus 121 ~~~~VLDiGcG~G~~~l~la~~~p-~~~V~~iD~s~~~l~~a~~~~~~~~l~-ni~~~~~d~~~~-~~~--~~~~~~fD~ 195 (289)
++.++||||.=||+.++..|...| +++|+++|+++...+.+.+..+..|.. .|+++++++.+. ... ....++||+
T Consensus 73 ~ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~agv~~KI~~i~g~a~esLd~l~~~~~~~tfDf 152 (237)
T KOG1663|consen 73 NAKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAGVDHKITFIEGPALESLDELLADGESGTFDF 152 (237)
T ss_pred CCceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhccccceeeeeecchhhhHHHHHhcCCCCceeE
Confidence 367999999999999999998876 589999999999999999999999985 599999988652 110 012368999
Q ss_pred EEEcCcc-cHHHHHHHHccccccCeEEEE
Q 022962 196 AVARAVA-EMRILAEYCLPLVRVGGLFVA 223 (289)
Q Consensus 196 V~sn~~~-~~~~ll~~~~~~LkpgG~l~~ 223 (289)
++..+.. ++....+++.++||+||.+++
T Consensus 153 aFvDadK~nY~~y~e~~l~Llr~GGvi~~ 181 (237)
T KOG1663|consen 153 AFVDADKDNYSNYYERLLRLLRVGGVIVV 181 (237)
T ss_pred EEEccchHHHHHHHHHHHhhcccccEEEE
Confidence 9999754 567899999999999999986
No 200
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.
Probab=98.73 E-value=1.5e-07 Score=84.06 Aligned_cols=103 Identities=13% Similarity=0.103 Sum_probs=84.9
Q ss_pred CCCeEEEEcCCCChHHHHHHHHCCC--CEEEEEeCChHHHHHHHHHHHHcCCCCE-EEEeccccccCCCCcCCCCceEEE
Q 022962 121 SNLKLVDVGTGAGLPGLVLAIACPD--WKVTLLESMNKRCVFLEHAVSLTQLLNV-QIVRGRAETLGKDVSFREQYDVAV 197 (289)
Q Consensus 121 ~~~~VLDiGcG~G~~~l~la~~~p~--~~V~~iD~s~~~l~~a~~~~~~~~l~ni-~~~~~d~~~~~~~~~~~~~fD~V~ 197 (289)
...+||||.||.|..-+.....+|. .+|...|.|+..++..++.+++.|++++ +|.++|+.+...-....-..|+++
T Consensus 135 ~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~gL~~i~~f~~~dAfd~~~l~~l~p~P~l~i 214 (311)
T PF12147_consen 135 RPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERGLEDIARFEQGDAFDRDSLAALDPAPTLAI 214 (311)
T ss_pred CceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcCCccceEEEecCCCCHhHhhccCCCCCEEE
Confidence 4679999999999998888777776 7999999999999999999999999986 999999987533222234579988
Q ss_pred EcCc----c---cHHHHHHHHccccccCeEEEE
Q 022962 198 ARAV----A---EMRILAEYCLPLVRVGGLFVA 223 (289)
Q Consensus 198 sn~~----~---~~~~ll~~~~~~LkpgG~l~~ 223 (289)
..++ . -+...++.+..++.|||+++.
T Consensus 215 VsGL~ElF~Dn~lv~~sl~gl~~al~pgG~lIy 247 (311)
T PF12147_consen 215 VSGLYELFPDNDLVRRSLAGLARALEPGGYLIY 247 (311)
T ss_pred EecchhhCCcHHHHHHHHHHHHHHhCCCcEEEE
Confidence 8752 2 256778899999999999975
No 201
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=98.69 E-value=7.3e-08 Score=89.11 Aligned_cols=105 Identities=11% Similarity=0.109 Sum_probs=70.8
Q ss_pred CCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcC-------C---CCEEEEeccccccCCC--C-
Q 022962 121 SNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQ-------L---LNVQIVRGRAETLGKD--V- 187 (289)
Q Consensus 121 ~~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~-------l---~ni~~~~~d~~~~~~~--~- 187 (289)
++.+|||||||-|.-..-.... .-..++|+|++...++.|++..+... . -...++.+|...-... .
T Consensus 62 ~~~~VLDl~CGkGGDL~Kw~~~-~i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~l~~~~~ 140 (331)
T PF03291_consen 62 PGLTVLDLCCGKGGDLQKWQKA-KIKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSESLREKLP 140 (331)
T ss_dssp TT-EEEEET-TTTTTHHHHHHT-T-SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSHHHCTSS
T ss_pred CCCeEEEecCCCchhHHHHHhc-CCCEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccccchhhhhcc
Confidence 4789999999977654555543 45799999999999999999873321 0 1356777777542111 0
Q ss_pred cCCCCceEEEEcC--------cccHHHHHHHHccccccCeEEEEEEc
Q 022962 188 SFREQYDVAVARA--------VAEMRILAEYCLPLVRVGGLFVAAKG 226 (289)
Q Consensus 188 ~~~~~fD~V~sn~--------~~~~~~ll~~~~~~LkpgG~l~~~~g 226 (289)
....+||+|-|.- ....+.+++.+...|+|||+|+....
T Consensus 141 ~~~~~FDvVScQFalHY~Fese~~ar~~l~Nvs~~Lk~GG~FIgT~~ 187 (331)
T PF03291_consen 141 PRSRKFDVVSCQFALHYAFESEEKARQFLKNVSSLLKPGGYFIGTTP 187 (331)
T ss_dssp STTS-EEEEEEES-GGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred ccCCCcceeehHHHHHHhcCCHHHHHHHHHHHHHhcCCCCEEEEEec
Confidence 1125899999872 23567899999999999999997653
No 202
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=98.68 E-value=1.7e-07 Score=95.11 Aligned_cols=108 Identities=9% Similarity=-0.013 Sum_probs=81.2
Q ss_pred CCCCeEEEEcCCCChHHHHHHHHC----C--------------------------------------CCEEEEEeCChHH
Q 022962 120 NSNLKLVDVGTGAGLPGLVLAIAC----P--------------------------------------DWKVTLLESMNKR 157 (289)
Q Consensus 120 ~~~~~VLDiGcG~G~~~l~la~~~----p--------------------------------------~~~V~~iD~s~~~ 157 (289)
+++..++|-+||||.+.+..|... | ..+++|+|+++++
T Consensus 189 ~~~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~~~~~~~~~~i~G~Did~~a 268 (702)
T PRK11783 189 QEGTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERARAGLAELPSKFYGSDIDPRV 268 (702)
T ss_pred CCCCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHhhcccccCceEEEEECCHHH
Confidence 457899999999999999987631 1 2379999999999
Q ss_pred HHHHHHHHHHcCCCC-EEEEeccccccCCCCcCCCCceEEEEcCc--------ccHHHHHHHHccccc---cCeEEEEEE
Q 022962 158 CVFLEHAVSLTQLLN-VQIVRGRAETLGKDVSFREQYDVAVARAV--------AEMRILAEYCLPLVR---VGGLFVAAK 225 (289)
Q Consensus 158 l~~a~~~~~~~~l~n-i~~~~~d~~~~~~~~~~~~~fD~V~sn~~--------~~~~~ll~~~~~~Lk---pgG~l~~~~ 225 (289)
++.|++|+..+|+.+ |++.++|+.++.... ..++||+|++|.. .+...+.+.....++ +|+.+++..
T Consensus 269 v~~A~~N~~~~g~~~~i~~~~~D~~~~~~~~-~~~~~d~IvtNPPYg~r~~~~~~l~~lY~~lg~~lk~~~~g~~~~llt 347 (702)
T PRK11783 269 IQAARKNARRAGVAELITFEVKDVADLKNPL-PKGPTGLVISNPPYGERLGEEPALIALYSQLGRRLKQQFGGWNAALFS 347 (702)
T ss_pred HHHHHHHHHHcCCCcceEEEeCChhhccccc-ccCCCCEEEECCCCcCccCchHHHHHHHHHHHHHHHHhCCCCeEEEEe
Confidence 999999999999865 999999998875431 1257999999941 233444444444444 899998887
Q ss_pred cCC
Q 022962 226 GHD 228 (289)
Q Consensus 226 g~~ 228 (289)
+..
T Consensus 348 ~~~ 350 (702)
T PRK11783 348 SSP 350 (702)
T ss_pred CCH
Confidence 753
No 203
>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like.; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.
Probab=98.67 E-value=7.1e-08 Score=83.13 Aligned_cols=126 Identities=13% Similarity=0.106 Sum_probs=84.0
Q ss_pred CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCcCCCCceEEEEcC-
Q 022962 122 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARA- 200 (289)
Q Consensus 122 ~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~~~~~fD~V~sn~- 200 (289)
..++||.|+|-|..+-.+.... .-+|..||.+++.++.|++........-.++++..++++.+. ..+||+|.+.-
T Consensus 56 ~~~alDcGAGIGRVTk~lLl~~-f~~VDlVEp~~~Fl~~a~~~l~~~~~~v~~~~~~gLQ~f~P~---~~~YDlIW~QW~ 131 (218)
T PF05891_consen 56 FNRALDCGAGIGRVTKGLLLPV-FDEVDLVEPVEKFLEQAKEYLGKDNPRVGEFYCVGLQDFTPE---EGKYDLIWIQWC 131 (218)
T ss_dssp -SEEEEET-TTTHHHHHTCCCC--SEEEEEES-HHHHHHHHHHTCCGGCCEEEEEES-GGG-------TT-EEEEEEES-
T ss_pred cceEEecccccchhHHHHHHHh-cCEeEEeccCHHHHHHHHHHhcccCCCcceEEecCHhhccCC---CCcEeEEEehHh
Confidence 5699999999999887654322 369999999999999998754432212267888889888653 36899999983
Q ss_pred -----cccHHHHHHHHccccccCeEEEEEEcC---C----------cHHHHHHHHHHHHHhCCeEeEEe
Q 022962 201 -----VAEMRILAEYCLPLVRVGGLFVAAKGH---D----------PQEEVKNSERAVQLMGASLLQLC 251 (289)
Q Consensus 201 -----~~~~~~ll~~~~~~LkpgG~l~~~~g~---~----------~~~ei~~~~~~l~~~g~~~~~~~ 251 (289)
-.++-.+++.|...|+|+|.+++-... . .......+.+.++++|+.++...
T Consensus 132 lghLTD~dlv~fL~RCk~~L~~~G~IvvKEN~~~~~~~~~D~~DsSvTRs~~~~~~lF~~AGl~~v~~~ 200 (218)
T PF05891_consen 132 LGHLTDEDLVAFLKRCKQALKPNGVIVVKENVSSSGFDEFDEEDSSVTRSDEHFRELFKQAGLRLVKEE 200 (218)
T ss_dssp GGGS-HHHHHHHHHHHHHHEEEEEEEEEEEEEESSSEEEEETTTTEEEEEHHHHHHHHHHCT-EEEEEE
T ss_pred hccCCHHHHHHHHHHHHHhCcCCcEEEEEecCCCCCCcccCCccCeeecCHHHHHHHHHHcCCEEEEec
Confidence 347889999999999999999863210 0 00012445567779999988765
No 204
>PRK04148 hypothetical protein; Provisional
Probab=98.64 E-value=1.2e-07 Score=76.08 Aligned_cols=83 Identities=10% Similarity=0.069 Sum_probs=61.2
Q ss_pred CCeEEEEcCCCCh-HHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCcCCCCceEEEEc-
Q 022962 122 NLKLVDVGTGAGL-PGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVAR- 199 (289)
Q Consensus 122 ~~~VLDiGcG~G~-~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~~~~~fD~V~sn- 199 (289)
+.+|+|||||+|. .+..|+.. +.+|+|+|+++.+++.++++ .+.++.+|+.+.... .-+.+|+|.|-
T Consensus 17 ~~kileIG~GfG~~vA~~L~~~--G~~ViaIDi~~~aV~~a~~~-------~~~~v~dDlf~p~~~--~y~~a~liysir 85 (134)
T PRK04148 17 NKKIVELGIGFYFKVAKKLKES--GFDVIVIDINEKAVEKAKKL-------GLNAFVDDLFNPNLE--IYKNAKLIYSIR 85 (134)
T ss_pred CCEEEEEEecCCHHHHHHHHHC--CCEEEEEECCHHHHHHHHHh-------CCeEEECcCCCCCHH--HHhcCCEEEEeC
Confidence 5789999999996 88888854 68999999999987777663 367889999876543 24679999974
Q ss_pred CcccHHHHHHHHcccc
Q 022962 200 AVAEMRILAEYCLPLV 215 (289)
Q Consensus 200 ~~~~~~~ll~~~~~~L 215 (289)
...++..-+-++.+-+
T Consensus 86 pp~el~~~~~~la~~~ 101 (134)
T PRK04148 86 PPRDLQPFILELAKKI 101 (134)
T ss_pred CCHHHHHHHHHHHHHc
Confidence 5555544444444444
No 205
>PRK00536 speE spermidine synthase; Provisional
Probab=98.64 E-value=8e-07 Score=79.45 Aligned_cols=139 Identities=9% Similarity=-0.032 Sum_probs=97.9
Q ss_pred CCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHH----cCCCCEEEEeccccccCCCCcCCCCceEE
Q 022962 121 SNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSL----TQLLNVQIVRGRAETLGKDVSFREQYDVA 196 (289)
Q Consensus 121 ~~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~----~~l~ni~~~~~d~~~~~~~~~~~~~fD~V 196 (289)
+..+||=||-|.|..+..+.+. +. +|+.||+++++++.+++.... +.-.+++++.. +.+ ...++||+|
T Consensus 72 ~pk~VLIiGGGDGg~~REvLkh-~~-~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~~-~~~-----~~~~~fDVI 143 (262)
T PRK00536 72 ELKEVLIVDGFDLELAHQLFKY-DT-HVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQ-LLD-----LDIKKYDLI 143 (262)
T ss_pred CCCeEEEEcCCchHHHHHHHCc-CC-eeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEeeh-hhh-----ccCCcCCEE
Confidence 3679999999999988888754 54 999999999999999994332 22235777652 211 113689999
Q ss_pred EEcCcccHHHHHHHHccccccCeEEEEEEcCC--cHHHHHHHHHHHHHhCCeEeEEeeeecCCCCCceEEEEEEec
Q 022962 197 VARAVAEMRILAEYCLPLVRVGGLFVAAKGHD--PQEEVKNSERAVQLMGASLLQLCSVESQSPFGQRTAVVCLKS 270 (289)
Q Consensus 197 ~sn~~~~~~~ll~~~~~~LkpgG~l~~~~g~~--~~~ei~~~~~~l~~~g~~~~~~~~~~~~~~~~~r~lv~~~k~ 270 (289)
++....+ +.+.+.+++.|+|||.++.-.+.. ..+.+..+.+.++. .|..+.......| ..|.+..+++.+.
T Consensus 144 IvDs~~~-~~fy~~~~~~L~~~Gi~v~Qs~sp~~~~~~~~~i~~~l~~-~F~~v~~y~~~vp-~~g~wgf~~aS~~ 216 (262)
T PRK00536 144 ICLQEPD-IHKIDGLKRMLKEDGVFISVAKHPLLEHVSMQNALKNMGD-FFSIAMPFVAPLR-ILSNKGYIYASFK 216 (262)
T ss_pred EEcCCCC-hHHHHHHHHhcCCCcEEEECCCCcccCHHHHHHHHHHHHh-hCCceEEEEecCC-CcchhhhheecCC
Confidence 9986543 678899999999999999755432 35666777777777 6765544332223 2467777777654
No 206
>KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis]
Probab=98.61 E-value=1.5e-06 Score=76.80 Aligned_cols=131 Identities=15% Similarity=0.115 Sum_probs=101.1
Q ss_pred CCCCCeEEEEcCCCChHHHHHHHHC-CCCEEEEEeCChHHHHHHHHHHHHcCCC-CEEEEeccccccCCCCcCCCCceEE
Q 022962 119 CNSNLKLVDVGTGAGLPGLVLAIAC-PDWKVTLLESMNKRCVFLEHAVSLTQLL-NVQIVRGRAETLGKDVSFREQYDVA 196 (289)
Q Consensus 119 ~~~~~~VLDiGcG~G~~~l~la~~~-p~~~V~~iD~s~~~l~~a~~~~~~~~l~-ni~~~~~d~~~~~~~~~~~~~fD~V 196 (289)
+.+|.+|++-|+|+|.++..+|+.. |.++++..|..+...+.|.+..++.|+. |+++.+-|+....+.. .+..+|.|
T Consensus 103 i~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hgi~~~vt~~hrDVc~~GF~~-ks~~aDaV 181 (314)
T KOG2915|consen 103 IRPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREHGIGDNVTVTHRDVCGSGFLI-KSLKADAV 181 (314)
T ss_pred CCCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhCCCcceEEEEeecccCCccc-cccccceE
Confidence 3469999999999999999999875 7899999999999999999999999985 7999999998765432 14689999
Q ss_pred EEcCcccHHHHHHHHccccccCe-EEEEEEcCCcHHHHHHHHHHHHHhCCeEeEEeee
Q 022962 197 VARAVAEMRILAEYCLPLVRVGG-LFVAAKGHDPQEEVKNSERAVQLMGASLLQLCSV 253 (289)
Q Consensus 197 ~sn~~~~~~~ll~~~~~~LkpgG-~l~~~~g~~~~~ei~~~~~~l~~~g~~~~~~~~~ 253 (289)
+..-.+++..+ .-+..+||.+| +++... .-.|.+....+++..+||..+++..+
T Consensus 182 FLDlPaPw~Ai-Pha~~~lk~~g~r~csFS--PCIEQvqrtce~l~~~gf~~i~~vEv 236 (314)
T KOG2915|consen 182 FLDLPAPWEAI-PHAAKILKDEGGRLCSFS--PCIEQVQRTCEALRSLGFIEIETVEV 236 (314)
T ss_pred EEcCCChhhhh-hhhHHHhhhcCceEEecc--HHHHHHHHHHHHHHhCCCceEEEEEe
Confidence 98866665444 34445888766 555433 34566667778888999976666544
No 207
>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins. In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....
Probab=98.59 E-value=2.2e-07 Score=84.28 Aligned_cols=106 Identities=18% Similarity=0.204 Sum_probs=85.9
Q ss_pred CCCCeEEEEcCCCChHHHHHHHHCC-CCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCcCCCCceEEEE
Q 022962 120 NSNLKLVDVGTGAGLPGLVLAIACP-DWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVA 198 (289)
Q Consensus 120 ~~~~~VLDiGcG~G~~~l~la~~~p-~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~~~~~fD~V~s 198 (289)
.++.+|||+|+|.|.=+..+|.... .+.|++.|++...+..++++++++|..++.+...|....... .....||.|+.
T Consensus 84 ~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~v~~~~~D~~~~~~~-~~~~~fd~Vlv 162 (283)
T PF01189_consen 84 QPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRLGVFNVIVINADARKLDPK-KPESKFDRVLV 162 (283)
T ss_dssp TTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT-SSEEEEESHHHHHHHH-HHTTTEEEEEE
T ss_pred cccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhcCCceEEEEeecccccccc-ccccccchhhc
Confidence 3578999999999999999998765 689999999999999999999999999999988887765321 11246999998
Q ss_pred cC-------------------------cc-cHHHHHHHHcccc----ccCeEEEEEEc
Q 022962 199 RA-------------------------VA-EMRILAEYCLPLV----RVGGLFVAAKG 226 (289)
Q Consensus 199 n~-------------------------~~-~~~~ll~~~~~~L----kpgG~l~~~~g 226 (289)
.+ +. --..+++.+.+++ ||||+++...-
T Consensus 163 DaPCSg~G~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k~gG~lvYsTC 220 (283)
T PF01189_consen 163 DAPCSGLGTIRRNPDIKWRRSPEDIEKLAELQREILDNAAKLLNIDFKPGGRLVYSTC 220 (283)
T ss_dssp ECSCCCGGGTTTCTTHHHHE-TTHHHHHHHHHHHHHHHHHHCEHHHBEEEEEEEEEES
T ss_pred CCCccchhhhhhccchhhcccccccchHHHHHHHHHHHHHHhhcccccCCCeEEEEec
Confidence 73 00 1368899999999 99999987653
No 208
>TIGR01444 fkbM_fam methyltransferase, FkbM family. Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.
Probab=98.59 E-value=2.1e-07 Score=75.26 Aligned_cols=59 Identities=25% Similarity=0.348 Sum_probs=53.8
Q ss_pred eEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccc
Q 022962 124 KLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAET 182 (289)
Q Consensus 124 ~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~ 182 (289)
+++|+|||.|..++.++...+.++|+++|+++.+.+.++++++.+++.++++++..+.+
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~~~~~v~~~E~~~~~~~~l~~~~~~n~~~~v~~~~~al~~ 59 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKGAEGRVIAFEPLPDAYEILEENVKLNNLPNVVLLNAAVGD 59 (143)
T ss_pred CEEEccCCccHHHHHHHHhCCCCEEEEEecCHHHHHHHHHHHHHcCCCcEEEEEeeeeC
Confidence 48999999999999999888888999999999999999999999988889888877764
No 209
>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised. All the members are 350-400 amino acids long.; PDB: 2QM3_A.
Probab=98.56 E-value=7.2e-06 Score=71.81 Aligned_cols=128 Identities=13% Similarity=0.150 Sum_probs=84.2
Q ss_pred CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCcCCCCceEEEEcCc
Q 022962 122 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARAV 201 (289)
Q Consensus 122 ~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~~~~~fD~V~sn~~ 201 (289)
|.+||-+|=+-- .|+++|...+..+|+-+|+++..+++.++.+++.|++ |+.++.|+.+--+ ..+.++||++++++.
T Consensus 45 gk~il~lGDDDL-tSlA~al~~~~~~I~VvDiDeRll~fI~~~a~~~gl~-i~~~~~DlR~~LP-~~~~~~fD~f~TDPP 121 (243)
T PF01861_consen 45 GKRILFLGDDDL-TSLALALTGLPKRITVVDIDERLLDFINRVAEEEGLP-IEAVHYDLRDPLP-EELRGKFDVFFTDPP 121 (243)
T ss_dssp T-EEEEES-TT--HHHHHHHHT--SEEEEE-S-HHHHHHHHHHHHHHT---EEEE---TTS----TTTSS-BSEEEE---
T ss_pred CCEEEEEcCCcH-HHHHHHhhCCCCeEEEEEcCHHHHHHHHHHHHHcCCc-eEEEEecccccCC-HHHhcCCCEEEeCCC
Confidence 789999996554 5788887777789999999999999999999999996 9999999987322 245689999999964
Q ss_pred ---ccHHHHHHHHccccccCe-EEEEEEcCCc--HHHHHHHHHHHHHhCCeEeEEee
Q 022962 202 ---AEMRILAEYCLPLVRVGG-LFVAAKGHDP--QEEVKNSERAVQLMGASLLQLCS 252 (289)
Q Consensus 202 ---~~~~~ll~~~~~~LkpgG-~l~~~~g~~~--~~ei~~~~~~l~~~g~~~~~~~~ 252 (289)
..+.-++......||..| ..++-.+... ..+...+++.+...|+.+.++.+
T Consensus 122 yT~~G~~LFlsRgi~~Lk~~g~~gy~~~~~~~~s~~~~~~~Q~~l~~~gl~i~dii~ 178 (243)
T PF01861_consen 122 YTPEGLKLFLSRGIEALKGEGCAGYFGFTHKEASPDKWLEVQRFLLEMGLVITDIIP 178 (243)
T ss_dssp SSHHHHHHHHHHHHHTB-STT-EEEEEE-TTT--HHHHHHHHHHHHTS--EEEEEEE
T ss_pred CCHHHHHHHHHHHHHHhCCCCceEEEEEecCcCcHHHHHHHHHHHHHCCcCHHHHHh
Confidence 456788888888999666 5555555443 44556778888899999888764
No 210
>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]
Probab=98.51 E-value=7.3e-08 Score=91.75 Aligned_cols=65 Identities=26% Similarity=0.259 Sum_probs=58.5
Q ss_pred CCCCCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccC
Q 022962 118 SCNSNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLG 184 (289)
Q Consensus 118 ~~~~~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~ 184 (289)
.++.+..++|++||||.+|+.+|+. ..+|+|||+++.+++.|+.|++.+|++|.+|+++.++++-
T Consensus 380 ~l~~~k~llDv~CGTG~iglala~~--~~~ViGvEi~~~aV~dA~~nA~~NgisNa~Fi~gqaE~~~ 444 (534)
T KOG2187|consen 380 GLPADKTLLDVCCGTGTIGLALARG--VKRVIGVEISPDAVEDAEKNAQINGISNATFIVGQAEDLF 444 (534)
T ss_pred CCCCCcEEEEEeecCCceehhhhcc--ccceeeeecChhhcchhhhcchhcCccceeeeecchhhcc
Confidence 3455789999999999999999854 6799999999999999999999999999999999888764
No 211
>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.49 E-value=8.4e-06 Score=69.30 Aligned_cols=147 Identities=19% Similarity=0.216 Sum_probs=105.9
Q ss_pred CCCCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCcCCCCceEEEE
Q 022962 119 CNSNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVA 198 (289)
Q Consensus 119 ~~~~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~~~~~fD~V~s 198 (289)
++++.+||=+|+-+|.-.--++...+.+.|+|||.|+.....+-..+++- .|+-.+.+|+.....-..+-+..|+|+.
T Consensus 74 i~~g~~VLYLGAasGTTvSHVSDIv~~G~iYaVEfs~R~~reLl~~a~~R--~Ni~PIL~DA~~P~~Y~~~Ve~VDviy~ 151 (231)
T COG1889 74 IKEGSKVLYLGAASGTTVSHVSDIVGEGRIYAVEFSPRPMRELLDVAEKR--PNIIPILEDARKPEKYRHLVEKVDVIYQ 151 (231)
T ss_pred cCCCCEEEEeeccCCCcHhHHHhccCCCcEEEEEecchhHHHHHHHHHhC--CCceeeecccCCcHHhhhhcccccEEEE
Confidence 34689999999999998778887778889999999998877666666553 4888888898754322122367999998
Q ss_pred c-Ccc-cHHHHHHHHccccccCeEEEEEE-c------CCcHHHHHHHHHHHHHhCCeEeEEeeeecCCCCCceEEEEEEe
Q 022962 199 R-AVA-EMRILAEYCLPLVRVGGLFVAAK-G------HDPQEEVKNSERAVQLMGASLLQLCSVESQSPFGQRTAVVCLK 269 (289)
Q Consensus 199 n-~~~-~~~~ll~~~~~~LkpgG~l~~~~-g------~~~~~ei~~~~~~l~~~g~~~~~~~~~~~~~~~~~r~lv~~~k 269 (289)
. +.. ..+.+...+..+||+||.+++.. . .+..+-+++..+.++..+|++.+...+ .|+...|++++.+
T Consensus 152 DVAQp~Qa~I~~~Na~~FLk~~G~~~i~iKArSIdvT~dp~~vf~~ev~kL~~~~f~i~e~~~L---ePye~DH~~i~~~ 228 (231)
T COG1889 152 DVAQPNQAEILADNAEFFLKKGGYVVIAIKARSIDVTADPEEVFKDEVEKLEEGGFEILEVVDL---EPYEKDHALIVAK 228 (231)
T ss_pred ecCCchHHHHHHHHHHHhcccCCeEEEEEEeecccccCCHHHHHHHHHHHHHhcCceeeEEecc---CCcccceEEEEEe
Confidence 7 333 45667788899999999777543 1 233444555566788899999988766 4666666666554
Q ss_pred c
Q 022962 270 S 270 (289)
Q Consensus 270 ~ 270 (289)
.
T Consensus 229 ~ 229 (231)
T COG1889 229 Y 229 (231)
T ss_pred e
Confidence 3
No 212
>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family. Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.
Probab=98.49 E-value=2.3e-06 Score=84.13 Aligned_cols=79 Identities=11% Similarity=0.119 Sum_probs=56.8
Q ss_pred CCeEEEEcCCCChHHHHHHHHCC--------CCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCC--CCcCCC
Q 022962 122 NLKLVDVGTGAGLPGLVLAIACP--------DWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGK--DVSFRE 191 (289)
Q Consensus 122 ~~~VLDiGcG~G~~~l~la~~~p--------~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~--~~~~~~ 191 (289)
..+|||.|||+|.+.+.++...+ ...++|+|+++.++..++.++...+.-.+.+.+.|...... .....+
T Consensus 32 ~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l~~~~~~~~~i~~~d~l~~~~~~~~~~~~ 111 (524)
T TIGR02987 32 KTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLLGEFALLEINVINFNSLSYVLLNIESYLD 111 (524)
T ss_pred ceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHHhhcCCCCceeeecccccccccccccccC
Confidence 56999999999999988876543 25799999999999999999887762235555555332111 011235
Q ss_pred CceEEEEcC
Q 022962 192 QYDVAVARA 200 (289)
Q Consensus 192 ~fD~V~sn~ 200 (289)
.||+|++|+
T Consensus 112 ~fD~IIgNP 120 (524)
T TIGR02987 112 LFDIVITNP 120 (524)
T ss_pred cccEEEeCC
Confidence 799999993
No 213
>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]
Probab=98.48 E-value=5.4e-07 Score=81.36 Aligned_cols=129 Identities=12% Similarity=0.123 Sum_probs=88.2
Q ss_pred cCcCceeecChHHHHHhhhhhccccCCCCccccccccCCCCCCCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHH
Q 022962 79 RKMNLTAVKDVNEVMERHIDDSLAIIPPIKNSYTSHCDSSCNSNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRC 158 (289)
Q Consensus 79 ~~~~l~~~~~~~~~~~~~~~~sl~~~~~~~~~~~~~~~~~~~~~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l 158 (289)
+..+++.+++...+++..++.--. +++..++|+|||-|.-.+-.-++ .-.+++|+||.+..+
T Consensus 92 q~S~Ii~lRnfNNwIKs~LI~~y~-----------------~~~~~~~~LgCGKGGDLlKw~kA-gI~~~igiDIAevSI 153 (389)
T KOG1975|consen 92 QRSPIIFLRNFNNWIKSVLINLYT-----------------KRGDDVLDLGCGKGGDLLKWDKA-GIGEYIGIDIAEVSI 153 (389)
T ss_pred ccCceeehhhhhHHHHHHHHHHHh-----------------ccccccceeccCCcccHhHhhhh-cccceEeeehhhccH
Confidence 345677777776655544433221 24778999999999866665544 346899999999999
Q ss_pred HHHHHHHHHcCC--C----CEEEEeccccccCCCC--cCCC-CceEEEEc-----C---cccHHHHHHHHccccccCeEE
Q 022962 159 VFLEHAVSLTQL--L----NVQIVRGRAETLGKDV--SFRE-QYDVAVAR-----A---VAEMRILAEYCLPLVRVGGLF 221 (289)
Q Consensus 159 ~~a~~~~~~~~l--~----ni~~~~~d~~~~~~~~--~~~~-~fD~V~sn-----~---~~~~~~ll~~~~~~LkpgG~l 221 (289)
..|+...+...- + .+.|+.+|...-.... .++. +||+|-|. + .+..+.++..+.+.|+|||+|
T Consensus 154 ~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~~~l~d~~e~~dp~fDivScQF~~HYaFetee~ar~~l~Nva~~LkpGG~F 233 (389)
T KOG1975|consen 154 NQARKRYRDMKNRFKKFIFTAVFIAADCFKERLMDLLEFKDPRFDIVSCQFAFHYAFETEESARIALRNVAKCLKPGGVF 233 (389)
T ss_pred HHHHHHHHHHHhhhhcccceeEEEEeccchhHHHHhccCCCCCcceeeeeeeEeeeeccHHHHHHHHHHHHhhcCCCcEE
Confidence 999987654321 1 2678888875421111 1123 39999886 2 345688999999999999999
Q ss_pred EEEE
Q 022962 222 VAAK 225 (289)
Q Consensus 222 ~~~~ 225 (289)
+-..
T Consensus 234 IgTi 237 (389)
T KOG1975|consen 234 IGTI 237 (389)
T ss_pred EEec
Confidence 8644
No 214
>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....
Probab=98.47 E-value=2.3e-07 Score=78.38 Aligned_cols=93 Identities=20% Similarity=0.265 Sum_probs=62.0
Q ss_pred CCeEEEEcCCCChHHHHHHHHC-CCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCC----CcC---CCCc
Q 022962 122 NLKLVDVGTGAGLPGLVLAIAC-PDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKD----VSF---REQY 193 (289)
Q Consensus 122 ~~~VLDiGcG~G~~~l~la~~~-p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~----~~~---~~~f 193 (289)
+.+|||+||++|.++-.+.... +.++|+|+|+.+. ....++.++++|+.+.... ... .++|
T Consensus 24 ~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~-----------~~~~~~~~i~~d~~~~~~~~~i~~~~~~~~~~~ 92 (181)
T PF01728_consen 24 GFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPM-----------DPLQNVSFIQGDITNPENIKDIRKLLPESGEKF 92 (181)
T ss_dssp TEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSST-----------GS-TTEEBTTGGGEEEEHSHHGGGSHGTTTCSE
T ss_pred ccEEEEcCCcccceeeeeeecccccceEEEEecccc-----------ccccceeeeecccchhhHHHhhhhhccccccCc
Confidence 5899999999999998888765 5689999999875 2234677777777543111 001 2589
Q ss_pred eEEEEcCc------------c---cHHHHHHHHccccccCeEEEEEE
Q 022962 194 DVAVARAV------------A---EMRILAEYCLPLVRVGGLFVAAK 225 (289)
Q Consensus 194 D~V~sn~~------------~---~~~~ll~~~~~~LkpgG~l~~~~ 225 (289)
|+|+|... . -....+.-+...|+|||.+++-.
T Consensus 93 dlv~~D~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~L~~gG~~v~K~ 139 (181)
T PF01728_consen 93 DLVLSDMAPNVSGDRNIDEFISIRLILSQLLLALELLKPGGTFVIKV 139 (181)
T ss_dssp SEEEE-------SSHHSSHHHHHHHHHHHHHHHHHHHCTTEEEEEEE
T ss_pred ceeccccccCCCCchhhHHHHHHHHHHHHHHHHHhhhcCCCEEEEEe
Confidence 99999841 0 12334446667899999988643
No 215
>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.
Probab=98.44 E-value=5.4e-07 Score=77.34 Aligned_cols=100 Identities=12% Similarity=0.094 Sum_probs=64.4
Q ss_pred CCeEEEEcCCCChHHHHH----HHH----CC-CCEEEEEeCChHHHHHHHHH--------------HHHc-----C----
Q 022962 122 NLKLVDVGTGAGLPGLVL----AIA----CP-DWKVTLLESMNKRCVFLEHA--------------VSLT-----Q---- 169 (289)
Q Consensus 122 ~~~VLDiGcG~G~~~l~l----a~~----~p-~~~V~~iD~s~~~l~~a~~~--------------~~~~-----~---- 169 (289)
..+|+..||+||-=.-.| ... .+ ..+|+|.|+|+.+++.|++- .++. +
T Consensus 32 ~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf~~~~~~~~~ 111 (196)
T PF01739_consen 32 PLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGIYPERSLRGLPPAYLRRYFTERDGGGYR 111 (196)
T ss_dssp -EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEEEGGGGTTS-HHHHHHHEEEE-CCCTT
T ss_pred CeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCCCHHHHhhhHHHHHHHhccccCCCcee
Confidence 569999999999744333 331 11 36999999999999999862 1111 1
Q ss_pred C-----CCEEEEeccccccCCCCcCCCCceEEEEcCc------ccHHHHHHHHccccccCeEEEEE
Q 022962 170 L-----LNVQIVRGRAETLGKDVSFREQYDVAVARAV------AEMRILAEYCLPLVRVGGLFVAA 224 (289)
Q Consensus 170 l-----~ni~~~~~d~~~~~~~~~~~~~fD~V~sn~~------~~~~~ll~~~~~~LkpgG~l~~~ 224 (289)
+ ++|+|.+.|+.+.. ...+.||+|+|+.+ +....+++.+.+.|+|||+|++-
T Consensus 112 v~~~lr~~V~F~~~NL~~~~---~~~~~fD~I~CRNVlIYF~~~~~~~vl~~l~~~L~pgG~L~lG 174 (196)
T PF01739_consen 112 VKPELRKMVRFRRHNLLDPD---PPFGRFDLIFCRNVLIYFDPETQQRVLRRLHRSLKPGGYLFLG 174 (196)
T ss_dssp E-HHHHTTEEEEE--TT-S---------EEEEEE-SSGGGS-HHHHHHHHHHHGGGEEEEEEEEE-
T ss_pred EChHHcCceEEEecccCCCC---cccCCccEEEecCEEEEeCHHHHHHHHHHHHHHcCCCCEEEEe
Confidence 0 35899999988821 12478999999964 34589999999999999999873
No 216
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=98.41 E-value=1.1e-06 Score=78.10 Aligned_cols=73 Identities=19% Similarity=0.171 Sum_probs=61.3
Q ss_pred CCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCcCCCCceEEEEc
Q 022962 121 SNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVAR 199 (289)
Q Consensus 121 ~~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~~~~~fD~V~sn 199 (289)
++..||+||+|.|.++..|++. +.+|+|||+++.++..+++... ..+|++++++|+.....+.. ..++.|++|
T Consensus 30 ~~d~VlEIGpG~GaLT~~Ll~~--~~~v~aiEiD~~l~~~L~~~~~--~~~n~~vi~~DaLk~d~~~l--~~~~~vVaN 102 (259)
T COG0030 30 PGDNVLEIGPGLGALTEPLLER--AARVTAIEIDRRLAEVLKERFA--PYDNLTVINGDALKFDFPSL--AQPYKVVAN 102 (259)
T ss_pred CCCeEEEECCCCCHHHHHHHhh--cCeEEEEEeCHHHHHHHHHhcc--cccceEEEeCchhcCcchhh--cCCCEEEEc
Confidence 4789999999999999999977 5689999999999999988655 33589999999998865311 068999999
No 217
>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2.1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.
Probab=98.40 E-value=3.6e-06 Score=77.15 Aligned_cols=150 Identities=14% Similarity=0.101 Sum_probs=89.8
Q ss_pred CCCeEEEEcCCCChHHHHHHHH-------CCCCEEEEEeCChHHHHHHHHHHHHcCCC--CEEEEeccccccCCCCcCCC
Q 022962 121 SNLKLVDVGTGAGLPGLVLAIA-------CPDWKVTLLESMNKRCVFLEHAVSLTQLL--NVQIVRGRAETLGKDVSFRE 191 (289)
Q Consensus 121 ~~~~VLDiGcG~G~~~l~la~~-------~p~~~V~~iD~s~~~l~~a~~~~~~~~l~--ni~~~~~d~~~~~~~~~~~~ 191 (289)
++.+|+|-+||+|.+.+.+... .+..+++|+|+++.++..|+.+..-.+.+ +..+.++|....+.. ...+
T Consensus 46 ~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~~~~~~~~i~~~d~l~~~~~-~~~~ 124 (311)
T PF02384_consen 46 KGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHGIDNSNINIIQGDSLENDKF-IKNQ 124 (311)
T ss_dssp TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTTHHCBGCEEEES-TTTSHSC-TST-
T ss_pred ccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhcccccccccccccccccccc-cccc
Confidence 3678999999999988776653 36789999999999999999887665543 346777876543321 0136
Q ss_pred CceEEEEcC----c--c-------------------cHHHHHHHHccccccCeEEEEEEcCCcH---HHHHHHHHHHHHh
Q 022962 192 QYDVAVARA----V--A-------------------EMRILAEYCLPLVRVGGLFVAAKGHDPQ---EEVKNSERAVQLM 243 (289)
Q Consensus 192 ~fD~V~sn~----~--~-------------------~~~~ll~~~~~~LkpgG~l~~~~g~~~~---~ei~~~~~~l~~~ 243 (289)
+||+|++|. . . .--.++..+...|++||++.+..+.... ..-..+.+.+-+.
T Consensus 125 ~~D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~~G~~~~Ilp~~~L~~~~~~~~iR~~ll~~ 204 (311)
T PF02384_consen 125 KFDVIIGNPPFGSKEWKDEELEKDERFKKYFPPKSNAEYAFIEHALSLLKPGGRAAIILPNGFLFSSSSEKKIRKYLLEN 204 (311)
T ss_dssp -EEEEEEE--CTCES-STGGGCTTCCCTTCSSSTTEHHHHHHHHHHHTEEEEEEEEEEEEHHHHHGSTHHHHHHHHHHHH
T ss_pred ccccccCCCCccccccccccccccccccccCCCccchhhhhHHHHHhhcccccceeEEecchhhhccchHHHHHHHHHhh
Confidence 899999993 1 0 0125788899999999998877643211 1112233333333
Q ss_pred CCeEeEEeeeec---CCCCCceEEEEEEecCC
Q 022962 244 GASLLQLCSVES---QSPFGQRTAVVCLKSRR 272 (289)
Q Consensus 244 g~~~~~~~~~~~---~~~~~~r~lv~~~k~~~ 272 (289)
+ .+..+..+.. ......-.++++.|..+
T Consensus 205 ~-~i~aVI~Lp~~~F~~t~v~t~ilil~k~~~ 235 (311)
T PF02384_consen 205 G-YIEAVISLPSNLFKPTGVPTSILILNKKKP 235 (311)
T ss_dssp E-EEEEEEE--TTSSSSSSS-EEEEEEEESSS
T ss_pred c-hhhEEeecccceecccCcCceEEEEeeccc
Confidence 3 3445544421 12223455777777653
No 218
>PRK10611 chemotaxis methyltransferase CheR; Provisional
Probab=98.38 E-value=6.1e-07 Score=81.33 Aligned_cols=101 Identities=15% Similarity=0.155 Sum_probs=72.9
Q ss_pred CCeEEEEcCCCChHHHHHH----HHCC----CCEEEEEeCChHHHHHHHHHH------HH-----------------cC-
Q 022962 122 NLKLVDVGTGAGLPGLVLA----IACP----DWKVTLLESMNKRCVFLEHAV------SL-----------------TQ- 169 (289)
Q Consensus 122 ~~~VLDiGcG~G~~~l~la----~~~p----~~~V~~iD~s~~~l~~a~~~~------~~-----------------~~- 169 (289)
.-+|+..||.||-=.-.+| ...+ ..+|+|+|+|+.+++.|++-. +. .+
T Consensus 116 ~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~~~ 195 (287)
T PRK10611 116 EYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYRQEELKTLSPQQLQRYFMRGTGPHEGL 195 (287)
T ss_pred CEEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCCCCHHHHhcCCHHHHHHHcccccCCCCce
Confidence 4699999999997443333 3222 368999999999999998741 00 01
Q ss_pred ------C-CCEEEEeccccccCCCCcCCCCceEEEEcCc------ccHHHHHHHHccccccCeEEEEE
Q 022962 170 ------L-LNVQIVRGRAETLGKDVSFREQYDVAVARAV------AEMRILAEYCLPLVRVGGLFVAA 224 (289)
Q Consensus 170 ------l-~ni~~~~~d~~~~~~~~~~~~~fD~V~sn~~------~~~~~ll~~~~~~LkpgG~l~~~ 224 (289)
+ ..|+|.+.|+.+.+.+ ..+.||+|+|+.+ +....+++.+.+.|+|||+|++-
T Consensus 196 ~~v~~~lr~~V~F~~~NL~~~~~~--~~~~fD~I~cRNvliyF~~~~~~~vl~~l~~~L~pgG~L~lG 261 (287)
T PRK10611 196 VRVRQELANYVDFQQLNLLAKQWA--VPGPFDAIFCRNVMIYFDKTTQERILRRFVPLLKPDGLLFAG 261 (287)
T ss_pred EEEChHHHccCEEEcccCCCCCCc--cCCCcceeeHhhHHhcCCHHHHHHHHHHHHHHhCCCcEEEEe
Confidence 1 2478888888763321 1378999999853 35789999999999999998763
No 219
>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2.5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.
Probab=98.38 E-value=1.7e-06 Score=77.70 Aligned_cols=143 Identities=16% Similarity=0.147 Sum_probs=77.6
Q ss_pred CCeEEEEcCCCChHH-HHHHHHC-CCCEEEEEeCChHHHHHHHHHHH-HcCCC-CEEEEeccccccCCCCcCCCCceEEE
Q 022962 122 NLKLVDVGTGAGLPG-LVLAIAC-PDWKVTLLESMNKRCVFLEHAVS-LTQLL-NVQIVRGRAETLGKDVSFREQYDVAV 197 (289)
Q Consensus 122 ~~~VLDiGcG~G~~~-l~la~~~-p~~~V~~iD~s~~~l~~a~~~~~-~~~l~-ni~~~~~d~~~~~~~~~~~~~fD~V~ 197 (289)
+.+|+=||||+=-++ +.++..+ ++..|+++|+++++++.+++..+ ..|+. +++|+.+|+.+...+. ..||+|+
T Consensus 121 p~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~L~~~m~f~~~d~~~~~~dl---~~~DvV~ 197 (276)
T PF03059_consen 121 PSRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLGLSKRMSFITADVLDVTYDL---KEYDVVF 197 (276)
T ss_dssp --EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---HH-SSEEEEES-GGGG-GG-------SEEE
T ss_pred cceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhcccccCCeEEEecchhcccccc---ccCCEEE
Confidence 459999999965544 5566543 57899999999999999999877 45554 5999999998765432 5799999
Q ss_pred EcCcc-----cHHHHHHHHccccccCeEEEEEEcCCcHHHH-HHHHHHHHHhCCeEeEEeeeecCCCCCceEEEEEEecC
Q 022962 198 ARAVA-----EMRILAEYCLPLVRVGGLFVAAKGHDPQEEV-KNSERAVQLMGASLLQLCSVESQSPFGQRTAVVCLKSR 271 (289)
Q Consensus 198 sn~~~-----~~~~ll~~~~~~LkpgG~l~~~~g~~~~~ei-~~~~~~l~~~g~~~~~~~~~~~~~~~~~r~lv~~~k~~ 271 (289)
..+.. +-.++++.+.+.++||..+++-.+.. ...+ .....-....||+...+ -+|..+--...|+++|..
T Consensus 198 lAalVg~~~e~K~~Il~~l~~~m~~ga~l~~Rsa~G-lR~~LYp~vd~~~l~gf~~~~~---~hP~~~ViNSvv~~rk~~ 273 (276)
T PF03059_consen 198 LAALVGMDAEPKEEILEHLAKHMAPGARLVVRSAHG-LRSFLYPVVDPEDLRGFEVLAV---VHPTDEVINSVVFARKKQ 273 (276)
T ss_dssp E-TT-S----SHHHHHHHHHHHS-TTSEEEEEE--G-GGGGSS----TGGGTTEEEEEE---E---TT---EEEEE----
T ss_pred EhhhcccccchHHHHHHHHHhhCCCCcEEEEecchh-hHHHcCCCCChHHCCCeEEEEE---ECCCCCceeEEEEEEecc
Confidence 87633 67899999999999999988754321 1111 00000001238865544 367766677788888764
No 220
>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]
Probab=98.37 E-value=2.9e-06 Score=78.97 Aligned_cols=105 Identities=14% Similarity=0.111 Sum_probs=83.1
Q ss_pred CCCCCCeEEEEcCCCChHHHHHHHHCCC--------------------------------C-------EEEEEeCChHHH
Q 022962 118 SCNSNLKLVDVGTGAGLPGLVLAIACPD--------------------------------W-------KVTLLESMNKRC 158 (289)
Q Consensus 118 ~~~~~~~VLDiGcG~G~~~l~la~~~p~--------------------------------~-------~V~~iD~s~~~l 158 (289)
..+++..++|==||||.+.+..|...++ + .++|+|+++.++
T Consensus 188 gw~~~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~~~~~~G~Did~r~i 267 (381)
T COG0116 188 GWKPDEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKELPIIYGSDIDPRHI 267 (381)
T ss_pred CCCCCCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcCccceEEEecCCHHHH
Confidence 4455679999999999999999877542 1 377999999999
Q ss_pred HHHHHHHHHcCCCC-EEEEeccccccCCCCcCCCCceEEEEcC-----------cc-cHHHHHHHHccccccCeEEEEEE
Q 022962 159 VFLEHAVSLTQLLN-VQIVRGRAETLGKDVSFREQYDVAVARA-----------VA-EMRILAEYCLPLVRVGGLFVAAK 225 (289)
Q Consensus 159 ~~a~~~~~~~~l~n-i~~~~~d~~~~~~~~~~~~~fD~V~sn~-----------~~-~~~~ll~~~~~~LkpgG~l~~~~ 225 (289)
+.|+.|++..|+.. |+|.++|+.++..+. +.+|+|+||. ++ -++.+.+.+++.++--+.+++..
T Consensus 268 ~~Ak~NA~~AGv~d~I~f~~~d~~~l~~~~---~~~gvvI~NPPYGeRlg~~~~v~~LY~~fg~~lk~~~~~ws~~v~tt 344 (381)
T COG0116 268 EGAKANARAAGVGDLIEFKQADATDLKEPL---EEYGVVISNPPYGERLGSEALVAKLYREFGRTLKRLLAGWSRYVFTT 344 (381)
T ss_pred HHHHHHHHhcCCCceEEEEEcchhhCCCCC---CcCCEEEeCCCcchhcCChhhHHHHHHHHHHHHHHHhcCCceEEEEc
Confidence 99999999999865 999999999987642 6899999994 22 24566667777777667776643
No 221
>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []. H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....
Probab=98.36 E-value=9.6e-07 Score=76.32 Aligned_cols=104 Identities=13% Similarity=0.105 Sum_probs=64.1
Q ss_pred CCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHH-------HcCC--CCEEEEeccccccCCCCcCCC
Q 022962 121 SNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVS-------LTQL--LNVQIVRGRAETLGKDVSFRE 191 (289)
Q Consensus 121 ~~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~-------~~~l--~ni~~~~~d~~~~~~~~~~~~ 191 (289)
++...+|||||.|...+..|...+..+.+|||+.+...+.|+...+ ..|. .++++.++|..+.......=.
T Consensus 42 ~~dvF~DlGSG~G~~v~~aal~~~~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~~~~v~l~~gdfl~~~~~~~~~s 121 (205)
T PF08123_consen 42 PDDVFYDLGSGVGNVVFQAALQTGCKKSVGIEILPELHDLAEELLEELKKRMKHYGKRPGKVELIHGDFLDPDFVKDIWS 121 (205)
T ss_dssp TT-EEEEES-TTSHHHHHHHHHH--SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB---EEEEECS-TTTHHHHHHHGH
T ss_pred CCCEEEECCCCCCHHHHHHHHHcCCcEEEEEEechHHHHHHHHHHHHHHHHHHHhhcccccceeeccCccccHhHhhhhc
Confidence 4789999999999998888877776779999999998888876443 2343 358888888765431100003
Q ss_pred CceEEEEcCcc---cHHHHHHHHccccccCeEEEEE
Q 022962 192 QYDVAVARAVA---EMRILAEYCLPLVRVGGLFVAA 224 (289)
Q Consensus 192 ~fD~V~sn~~~---~~~~ll~~~~~~LkpgG~l~~~ 224 (289)
..|+|++|... +...-+.+....||+|-+++-.
T Consensus 122 ~AdvVf~Nn~~F~~~l~~~L~~~~~~lk~G~~IIs~ 157 (205)
T PF08123_consen 122 DADVVFVNNTCFDPDLNLALAELLLELKPGARIIST 157 (205)
T ss_dssp C-SEEEE--TTT-HHHHHHHHHHHTTS-TT-EEEES
T ss_pred CCCEEEEeccccCHHHHHHHHHHHhcCCCCCEEEEC
Confidence 47999999653 3444445666778888887643
No 222
>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=98.34 E-value=1.2e-06 Score=77.49 Aligned_cols=74 Identities=23% Similarity=0.210 Sum_probs=62.9
Q ss_pred CCCCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCC-CEEEEeccccccCCCCcCCCCceEEE
Q 022962 119 CNSNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLL-NVQIVRGRAETLGKDVSFREQYDVAV 197 (289)
Q Consensus 119 ~~~~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~-ni~~~~~d~~~~~~~~~~~~~fD~V~ 197 (289)
+++++.||++|-|||.++..|... +.+|+|+|+++.|++..++..+....+ ..+++++|....+. -.||.++
T Consensus 56 ~k~tD~VLEvGPGTGnLT~~lLe~--~kkVvA~E~Dprmvael~krv~gtp~~~kLqV~~gD~lK~d~-----P~fd~cV 128 (315)
T KOG0820|consen 56 LKPTDVVLEVGPGTGNLTVKLLEA--GKKVVAVEIDPRMVAELEKRVQGTPKSGKLQVLHGDFLKTDL-----PRFDGCV 128 (315)
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHh--cCeEEEEecCcHHHHHHHHHhcCCCccceeeEEecccccCCC-----cccceee
Confidence 456889999999999999888765 789999999999999999877765544 49999999987754 3599999
Q ss_pred Ec
Q 022962 198 AR 199 (289)
Q Consensus 198 sn 199 (289)
+|
T Consensus 129 sN 130 (315)
T KOG0820|consen 129 SN 130 (315)
T ss_pred cc
Confidence 98
No 223
>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]
Probab=98.34 E-value=3e-06 Score=69.89 Aligned_cols=102 Identities=19% Similarity=0.204 Sum_probs=77.1
Q ss_pred CCCCCCeEEEEcCCCChHHHHHHHH-CCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccC--CCCcCCCCce
Q 022962 118 SCNSNLKLVDVGTGAGLPGLVLAIA-CPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLG--KDVSFREQYD 194 (289)
Q Consensus 118 ~~~~~~~VLDiGcG~G~~~l~la~~-~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~--~~~~~~~~fD 194 (289)
+.+.+.-||++|.|||.++-.+... .+...+++||.|++....+.+. .+.++++++|+.++. .....+..||
T Consensus 45 ~pesglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~-----~p~~~ii~gda~~l~~~l~e~~gq~~D 119 (194)
T COG3963 45 DPESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQL-----YPGVNIINGDAFDLRTTLGEHKGQFFD 119 (194)
T ss_pred CcccCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHh-----CCCccccccchhhHHHHHhhcCCCeee
Confidence 3445779999999999999886544 4668999999999887766652 235678999998875 2212245799
Q ss_pred EEEEc------CcccHHHHHHHHccccccCeEEEEE
Q 022962 195 VAVAR------AVAEMRILAEYCLPLVRVGGLFVAA 224 (289)
Q Consensus 195 ~V~sn------~~~~~~~ll~~~~~~LkpgG~l~~~ 224 (289)
.|+|. .+...-++++.+...|..||.++-.
T Consensus 120 ~viS~lPll~~P~~~~iaile~~~~rl~~gg~lvqf 155 (194)
T COG3963 120 SVISGLPLLNFPMHRRIAILESLLYRLPAGGPLVQF 155 (194)
T ss_pred eEEeccccccCcHHHHHHHHHHHHHhcCCCCeEEEE
Confidence 99997 2334568899999999999999854
No 224
>COG3897 Predicted methyltransferase [General function prediction only]
Probab=98.32 E-value=1.3e-06 Score=73.71 Aligned_cols=97 Identities=14% Similarity=0.121 Sum_probs=76.7
Q ss_pred CCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCcCCCCceEEEEcC
Q 022962 121 SNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARA 200 (289)
Q Consensus 121 ~~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~~~~~fD~V~sn~ 200 (289)
.+.+|||+|+|+|..++..|+. ....|++.|+.+.....++.|++.+|. +|.+.+.|+-. . +..||+|+...
T Consensus 79 rgkrVLd~gagsgLvaIAaa~a-GA~~v~a~d~~P~~~~ai~lNa~angv-~i~~~~~d~~g-~-----~~~~Dl~LagD 150 (218)
T COG3897 79 RGKRVLDLGAGSGLVAIAAARA-GAAEVVAADIDPWLEQAIRLNAAANGV-SILFTHADLIG-S-----PPAFDLLLAGD 150 (218)
T ss_pred ccceeeecccccChHHHHHHHh-hhHHHHhcCCChHHHHHhhcchhhccc-eeEEeeccccC-C-----CcceeEEEeec
Confidence 4889999999999999998865 567899999999999999999999997 69998888765 2 26799999875
Q ss_pred cc----cHHHHHHHHccccccCeEEEEEEc
Q 022962 201 VA----EMRILAEYCLPLVRVGGLFVAAKG 226 (289)
Q Consensus 201 ~~----~~~~ll~~~~~~LkpgG~l~~~~g 226 (289)
+- .-..+++ ....|+..|.-++.-.
T Consensus 151 lfy~~~~a~~l~~-~~~~l~~~g~~vlvgd 179 (218)
T COG3897 151 LFYNHTEADRLIP-WKDRLAEAGAAVLVGD 179 (218)
T ss_pred eecCchHHHHHHH-HHHHHHhCCCEEEEeC
Confidence 31 2345555 6777777787776543
No 225
>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes. The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.
Probab=98.32 E-value=2.6e-06 Score=77.31 Aligned_cols=77 Identities=17% Similarity=0.251 Sum_probs=48.8
Q ss_pred CCeEEEEcCCCChH-HHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHc-CCC-CEEEEeccccc-c-CCCCcCCCCceEE
Q 022962 122 NLKLVDVGTGAGLP-GLVLAIACPDWKVTLLESMNKRCVFLEHAVSLT-QLL-NVQIVRGRAET-L-GKDVSFREQYDVA 196 (289)
Q Consensus 122 ~~~VLDiGcG~G~~-~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~-~l~-ni~~~~~d~~~-~-~~~~~~~~~fD~V 196 (289)
..++||||||.-++ .+..++.+ +++++|.|+++..++.|+++++.+ +++ +|+++...-.+ + ..-....+.||+.
T Consensus 103 ~v~glDIGTGAscIYpLLg~~~~-~W~fvaTdID~~sl~~A~~nv~~N~~L~~~I~l~~~~~~~~i~~~i~~~~e~~dft 181 (299)
T PF05971_consen 103 KVRGLDIGTGASCIYPLLGAKLY-GWSFVATDIDPKSLESARENVERNPNLESRIELRKQKNPDNIFDGIIQPNERFDFT 181 (299)
T ss_dssp --EEEEES-TTTTHHHHHHHHHH---EEEEEES-HHHHHHHHHHHHHT-T-TTTEEEEE--ST-SSTTTSTT--S-EEEE
T ss_pred ceEeecCCccHHHHHHHHhhhhc-CCeEEEecCCHHHHHHHHHHHHhccccccceEEEEcCCccccchhhhcccceeeEE
Confidence 56899999998865 45555554 899999999999999999999999 886 48887653222 1 1111123689999
Q ss_pred EEc
Q 022962 197 VAR 199 (289)
Q Consensus 197 ~sn 199 (289)
+||
T Consensus 182 mCN 184 (299)
T PF05971_consen 182 MCN 184 (299)
T ss_dssp EE-
T ss_pred ecC
Confidence 999
No 226
>PF13679 Methyltransf_32: Methyltransferase domain
Probab=98.28 E-value=3e-06 Score=68.89 Aligned_cols=75 Identities=17% Similarity=0.253 Sum_probs=59.6
Q ss_pred CCCeEEEEcCCCChHHHHHHHH----CCCCEEEEEeCChHHHHHHHHHHHHcC--C-CCEEEEeccccccCCCCcCCCCc
Q 022962 121 SNLKLVDVGTGAGLPGLVLAIA----CPDWKVTLLESMNKRCVFLEHAVSLTQ--L-LNVQIVRGRAETLGKDVSFREQY 193 (289)
Q Consensus 121 ~~~~VLDiGcG~G~~~l~la~~----~p~~~V~~iD~s~~~l~~a~~~~~~~~--l-~ni~~~~~d~~~~~~~~~~~~~f 193 (289)
+..+|+|+|||-|.++..++.. .++.+|+|||.++..++.++..++..+ . .++++..+++.+... ....
T Consensus 25 ~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~ 100 (141)
T PF13679_consen 25 RCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNESLVESAQKRAQKLGSDLEKRLSFIQGDIADESS----SDPP 100 (141)
T ss_pred CCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcHHHHHHHHHHHHhcchhhccchhhccchhhhcc----cCCC
Confidence 3679999999999999999972 268899999999999999999988887 4 457777777765432 2456
Q ss_pred eEEEEc
Q 022962 194 DVAVAR 199 (289)
Q Consensus 194 D~V~sn 199 (289)
++++.-
T Consensus 101 ~~~vgL 106 (141)
T PF13679_consen 101 DILVGL 106 (141)
T ss_pred eEEEEe
Confidence 777754
No 227
>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.26 E-value=1.7e-05 Score=68.12 Aligned_cols=105 Identities=20% Similarity=0.296 Sum_probs=73.1
Q ss_pred CCCCeEEEEcCCCChHHHHHHHHC-CCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCC----cC-CCCc
Q 022962 120 NSNLKLVDVGTGAGLPGLVLAIAC-PDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDV----SF-REQY 193 (289)
Q Consensus 120 ~~~~~VLDiGcG~G~~~l~la~~~-p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~----~~-~~~f 193 (289)
+++..|+|||+-.|.|+-.+++.. ++..|+|||+.+-. ...+|.++++|+.+-.... .. ..++
T Consensus 44 ~~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~~-----------~~~~V~~iq~d~~~~~~~~~l~~~l~~~~~ 112 (205)
T COG0293 44 KPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPMK-----------PIPGVIFLQGDITDEDTLEKLLEALGGAPV 112 (205)
T ss_pred cCCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECcccc-----------cCCCceEEeeeccCccHHHHHHHHcCCCCc
Confidence 358899999999999999988775 44679999997732 2347999999998643210 11 2357
Q ss_pred eEEEEcCcc---------------cHHHHHHHHccccccCeEEEE--EEcCCcHHHHHH
Q 022962 194 DVAVARAVA---------------EMRILAEYCLPLVRVGGLFVA--AKGHDPQEEVKN 235 (289)
Q Consensus 194 D~V~sn~~~---------------~~~~ll~~~~~~LkpgG~l~~--~~g~~~~~ei~~ 235 (289)
|+|+|..-+ --...++-+..+|+|||.|++ ..|.+..+.+..
T Consensus 113 DvV~sD~ap~~~g~~~~Dh~r~~~L~~~a~~~a~~vL~~~G~fv~K~fqg~~~~~~l~~ 171 (205)
T COG0293 113 DVVLSDMAPNTSGNRSVDHARSMYLCELALEFALEVLKPGGSFVAKVFQGEDFEDLLKA 171 (205)
T ss_pred ceEEecCCCCcCCCccccHHHHHHHHHHHHHHHHHeeCCCCeEEEEEEeCCCHHHHHHH
Confidence 999987311 124566778889999999985 345554444433
No 228
>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases.; PDB: 3EEY_H 3LBY_A 3MTI_A.
Probab=98.25 E-value=9.8e-06 Score=65.50 Aligned_cols=120 Identities=18% Similarity=0.174 Sum_probs=76.0
Q ss_pred EEEEEeCChHHHHHHHHHHHHcCCC-CEEEEeccccccCCCCcCCCCceEEEEc-C------------cccHHHHHHHHc
Q 022962 147 KVTLLESMNKRCVFLEHAVSLTQLL-NVQIVRGRAETLGKDVSFREQYDVAVAR-A------------VAEMRILAEYCL 212 (289)
Q Consensus 147 ~V~~iD~s~~~l~~a~~~~~~~~l~-ni~~~~~d~~~~~~~~~~~~~fD~V~sn-~------------~~~~~~ll~~~~ 212 (289)
+|+|.|+.+++++.+++..++.++. ++++++..=+.+..... .+++|+++.| + ...--..++.+.
T Consensus 1 kVyaFDIQ~~Ai~~T~~rL~~~~~~~~v~li~~sHe~l~~~i~-~~~v~~~iFNLGYLPggDk~i~T~~~TTl~Al~~al 79 (140)
T PF06962_consen 1 KVYAFDIQEEAIENTRERLEEAGLEDRVTLILDSHENLDEYIP-EGPVDAAIFNLGYLPGGDKSITTKPETTLKALEAAL 79 (140)
T ss_dssp EEEEEES-HHHHHHHHHHHHHTT-GSGEEEEES-GGGGGGT---S--EEEEEEEESB-CTS-TTSB--HHHHHHHHHHHH
T ss_pred CEEEEECHHHHHHHHHHHHHhcCCCCcEEEEECCHHHHHhhCc-cCCcCEEEEECCcCCCCCCCCCcCcHHHHHHHHHHH
Confidence 6999999999999999999999875 59999877666654211 1389999999 1 123456778889
Q ss_pred cccccCeEEEEEE--cCCc-HHHHHHHHHHHH---HhCCeEeEEeeeecCCCCCceEEEEEEe
Q 022962 213 PLVRVGGLFVAAK--GHDP-QEEVKNSERAVQ---LMGASLLQLCSVESQSPFGQRTAVVCLK 269 (289)
Q Consensus 213 ~~LkpgG~l~~~~--g~~~-~~ei~~~~~~l~---~~g~~~~~~~~~~~~~~~~~r~lv~~~k 269 (289)
++|+|||.+.+.. |... .+|...+.+.++ ...|.+....++. ....+..+++++|
T Consensus 80 ~lL~~gG~i~iv~Y~GH~gG~eE~~av~~~~~~L~~~~~~V~~~~~~N--~~~~pp~l~~ieK 140 (140)
T PF06962_consen 80 ELLKPGGIITIVVYPGHPGGKEESEAVEEFLASLDQKEFNVLKYQFIN--QKNNPPLLVIIEK 140 (140)
T ss_dssp HHEEEEEEEEEEE--STCHHHHHHHHHHHHHHTS-TTTEEEEEEEESS---SS---EEEEEEE
T ss_pred HhhccCCEEEEEEeCCCCCCHHHHHHHHHHHHhCCcceEEEEEEEccC--CCCCCCEEEEEEC
Confidence 9999999998764 4433 345444444433 3466666665542 2234455666654
No 229
>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....
Probab=98.25 E-value=1.7e-05 Score=70.72 Aligned_cols=131 Identities=18% Similarity=0.166 Sum_probs=80.4
Q ss_pred CCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHH----------------cCC------------CC
Q 022962 121 SNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSL----------------TQL------------LN 172 (289)
Q Consensus 121 ~~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~----------------~~l------------~n 172 (289)
++.++||||||+-+..+.-|..+ .-+|++.|.++...+.+++-.+. -|- ..
T Consensus 56 ~g~~llDiGsGPtiy~~lsa~~~-f~~I~l~dy~~~N~~el~kWl~~~~a~DWs~~~~~v~~lEg~~~~~~e~e~~lR~~ 134 (256)
T PF01234_consen 56 KGETLLDIGSGPTIYQLLSACEW-FEEIVLSDYSEQNREELEKWLRKEGAFDWSPFWKYVCELEGKREKWEEKEEKLRRA 134 (256)
T ss_dssp -EEEEEEES-TT--GGGTTGGGT-EEEEEEEESSHHHHHHHHHHHTT-TS--THHHHHHHHHHTTSSSGHHHHHHHHHHH
T ss_pred CCCEEEEeCCCcHHHhhhhHHHh-hcceEEeeccHhhHHHHHHHHCCCCCCCccHHHHHHHhccCCcchhhhHHHHHHHh
Confidence 37799999999977654444332 34799999999887755442221 110 01
Q ss_pred E-EEEeccccccCCCCc---CCCCceEEEEcC--------cccHHHHHHHHccccccCeEEEEEE---------cCCc--
Q 022962 173 V-QIVRGRAETLGKDVS---FREQYDVAVARA--------VAEMRILAEYCLPLVRVGGLFVAAK---------GHDP-- 229 (289)
Q Consensus 173 i-~~~~~d~~~~~~~~~---~~~~fD~V~sn~--------~~~~~~ll~~~~~~LkpgG~l~~~~---------g~~~-- 229 (289)
| .++..|+...+.-.. .+.+||+|+|.- .+.+...++.+.++|||||.|++.. |...
T Consensus 135 Vk~Vv~cDV~~~~pl~~~~~~p~~~D~v~s~fcLE~a~~d~~~y~~al~ni~~lLkpGG~Lil~~~l~~t~Y~vG~~~F~ 214 (256)
T PF01234_consen 135 VKQVVPCDVTQPNPLDPPVVLPPKFDCVISSFCLESACKDLDEYRRALRNISSLLKPGGHLILAGVLGSTYYMVGGHKFP 214 (256)
T ss_dssp EEEEEE--TTSSSTTTTS-SS-SSEEEEEEESSHHHH-SSHHHHHHHHHHHHTTEEEEEEEEEEEESS-SEEEETTEEEE
T ss_pred hceEEEeeccCCCCCCccccCccchhhhhhhHHHHHHcCCHHHHHHHHHHHHHHcCCCcEEEEEEEcCceeEEECCEecc
Confidence 3 367788876443211 234699999872 4468899999999999999999653 2110
Q ss_pred --HHHHHHHHHHHHHhCCeEeEEee
Q 022962 230 --QEEVKNSERAVQLMGASLLQLCS 252 (289)
Q Consensus 230 --~~ei~~~~~~l~~~g~~~~~~~~ 252 (289)
.-.-+.+.++++++|+.+.+...
T Consensus 215 ~l~l~ee~v~~al~~aG~~i~~~~~ 239 (256)
T PF01234_consen 215 CLPLNEEFVREALEEAGFDIEDLEK 239 (256)
T ss_dssp ---B-HHHHHHHHHHTTEEEEEEEG
T ss_pred cccCCHHHHHHHHHHcCCEEEeccc
Confidence 00113355677899999888873
No 230
>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional
Probab=98.24 E-value=5.4e-05 Score=69.73 Aligned_cols=115 Identities=19% Similarity=0.150 Sum_probs=79.9
Q ss_pred CCCCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCcCCCCceEEEE
Q 022962 119 CNSNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVA 198 (289)
Q Consensus 119 ~~~~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~~~~~fD~V~s 198 (289)
+.++.++|||||++|.++-.+.+. +.+|+|||..+- ..... ...+|+.+.+|...+... .+.+|.++|
T Consensus 209 ~~~g~~vlDLGAsPGGWT~~L~~r--G~~V~AVD~g~l-----~~~L~--~~~~V~h~~~d~fr~~p~---~~~vDwvVc 276 (357)
T PRK11760 209 LAPGMRAVDLGAAPGGWTYQLVRR--GMFVTAVDNGPM-----AQSLM--DTGQVEHLRADGFKFRPP---RKNVDWLVC 276 (357)
T ss_pred cCCCCEEEEeCCCCcHHHHHHHHc--CCEEEEEechhc-----CHhhh--CCCCEEEEeccCcccCCC---CCCCCEEEE
Confidence 356899999999999999998865 569999996541 12222 224698888887766432 368999999
Q ss_pred cCcccHHHHHHHHccccccC--eEEEEE-E--cCCcHHHHHH----HHHHHHHhCC
Q 022962 199 RAVAEMRILAEYCLPLVRVG--GLFVAA-K--GHDPQEEVKN----SERAVQLMGA 245 (289)
Q Consensus 199 n~~~~~~~ll~~~~~~Lkpg--G~l~~~-~--g~~~~~ei~~----~~~~l~~~g~ 245 (289)
..+..+..+++.+.++|..| ..+++- + +...-+++.. +.+.+.+.|.
T Consensus 277 Dmve~P~rva~lm~~Wl~~g~cr~aIfnLKlpmk~r~~~v~~~l~~i~~~l~~~g~ 332 (357)
T PRK11760 277 DMVEKPARVAELMAQWLVNGWCREAIFNLKLPMKKRYEEVRQCLELIEEQLDENGI 332 (357)
T ss_pred ecccCHHHHHHHHHHHHhcCcccEEEEEEEcCCCCCHHHHHHHHHHHHHHHHHcCC
Confidence 99888888989888888766 244432 2 2233444433 3445556776
No 231
>KOG3201 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.23 E-value=8.9e-07 Score=72.56 Aligned_cols=129 Identities=17% Similarity=0.208 Sum_probs=95.0
Q ss_pred CCeEEEEcCC-CChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcC---CCCEEEEeccccccCCCCcCCCCceEEE
Q 022962 122 NLKLVDVGTG-AGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQ---LLNVQIVRGRAETLGKDVSFREQYDVAV 197 (289)
Q Consensus 122 ~~~VLDiGcG-~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~---l~ni~~~~~d~~~~~~~~~~~~~fD~V~ 197 (289)
+.+||++|.| +|.-|+++|...|...|...|-+++.+...++....+. ++.+.++.-++..-... ....+||.|+
T Consensus 30 g~~ilelgggft~laglmia~~a~~~~v~ltdgne~svrnv~ki~~~n~~s~~tsc~vlrw~~~~aqsq-~eq~tFDiIl 108 (201)
T KOG3201|consen 30 GRRILELGGGFTGLAGLMIACKAPDSSVWLTDGNEESVRNVEKIRNSNMASSLTSCCVLRWLIWGAQSQ-QEQHTFDIIL 108 (201)
T ss_pred HHHHHHhcCchhhhhhhheeeecCCceEEEecCCHHHHHHHHHHHhcccccccceehhhHHHHhhhHHH-HhhCcccEEE
Confidence 6789999999 67778899988899999999999999998888666552 33444444333332111 1135899999
Q ss_pred EcC---c-ccHHHHHHHHccccccCeEEEEEEcCCcHHHHHHHHHHHHHhCCeEeEEee
Q 022962 198 ARA---V-AEMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLLQLCS 252 (289)
Q Consensus 198 sn~---~-~~~~~ll~~~~~~LkpgG~l~~~~g~~~~~ei~~~~~~l~~~g~~~~~~~~ 252 (289)
+.. + ...+.+++.+..+|+|.|..++ ..+.+.+.++..+......||.+..-..
T Consensus 109 aADClFfdE~h~sLvdtIk~lL~p~g~Al~-fsPRRg~sL~kF~de~~~~gf~v~l~en 166 (201)
T KOG3201|consen 109 AADCLFFDEHHESLVDTIKSLLRPSGRALL-FSPRRGQSLQKFLDEVGTVGFTVCLEEN 166 (201)
T ss_pred eccchhHHHHHHHHHHHHHHHhCcccceeE-ecCcccchHHHHHHHHHhceeEEEeccc
Confidence 874 2 2457899999999999999765 4567777888888888899987654443
No 232
>KOG2940 consensus Predicted methyltransferase [General function prediction only]
Probab=98.22 E-value=3.2e-06 Score=73.13 Aligned_cols=105 Identities=17% Similarity=0.176 Sum_probs=78.0
Q ss_pred CeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCcCCCCceEEEEcC--
Q 022962 123 LKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARA-- 200 (289)
Q Consensus 123 ~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~~~~~fD~V~sn~-- 200 (289)
..++|||||-|.++-.+-.. .-.+++.+|-|..|+..++.. +..++ .+....+|-+.++.. ++++|+|++.-
T Consensus 74 p~a~diGcs~G~v~rhl~~e-~vekli~~DtS~~M~~s~~~~-qdp~i-~~~~~v~DEE~Ldf~---ens~DLiisSlsl 147 (325)
T KOG2940|consen 74 PTAFDIGCSLGAVKRHLRGE-GVEKLIMMDTSYDMIKSCRDA-QDPSI-ETSYFVGDEEFLDFK---ENSVDLIISSLSL 147 (325)
T ss_pred cceeecccchhhhhHHHHhc-chhheeeeecchHHHHHhhcc-CCCce-EEEEEecchhccccc---ccchhhhhhhhhh
Confidence 47999999999988776544 246899999999998887763 22333 255567788877654 48999999873
Q ss_pred --cccHHHHHHHHccccccCeEEEEE-EcCCcHHHH
Q 022962 201 --VAEMRILAEYCLPLVRVGGLFVAA-KGHDPQEEV 233 (289)
Q Consensus 201 --~~~~~~ll~~~~~~LkpgG~l~~~-~g~~~~~ei 233 (289)
+.+++..+.+|+..|||+|.|+.. .|.+..-|+
T Consensus 148 HW~NdLPg~m~~ck~~lKPDg~FiasmlggdTLyEL 183 (325)
T KOG2940|consen 148 HWTNDLPGSMIQCKLALKPDGLFIASMLGGDTLYEL 183 (325)
T ss_pred hhhccCchHHHHHHHhcCCCccchhHHhccccHHHH
Confidence 446788889999999999999853 344544443
No 233
>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]
Probab=98.20 E-value=2.4e-05 Score=61.14 Aligned_cols=99 Identities=18% Similarity=0.132 Sum_probs=68.1
Q ss_pred EEEEcCCCChHHHHHHHHCCC-CEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccc--cCCCCcCCCCceEEEEcCc
Q 022962 125 LVDVGTGAGLPGLVLAIACPD-WKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAET--LGKDVSFREQYDVAVARAV 201 (289)
Q Consensus 125 VLDiGcG~G~~~l~la~~~p~-~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~--~~~~~~~~~~fD~V~sn~~ 201 (289)
++|+|||+|... .++...+. ..++++|+++.++..++......+..++.+..++... ++... ...||++.+...
T Consensus 52 ~ld~~~g~g~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~d~~~~~~~ 128 (257)
T COG0500 52 VLDIGCGTGRLA-LLARLGGRGAYVVGVDLSPEMLALARARAEGAGLGLVDFVVADALGGVLPFED--SASFDLVISLLV 128 (257)
T ss_pred eEEecCCcCHHH-HHHHhCCCCceEEEEeCCHHHHHHHHhhhhhcCCCceEEEEeccccCCCCCCC--CCceeEEeeeee
Confidence 999999999876 44443333 4899999999999985554433222116788888765 33321 137999943332
Q ss_pred c---cHHHHHHHHccccccCeEEEEEEc
Q 022962 202 A---EMRILAEYCLPLVRVGGLFVAAKG 226 (289)
Q Consensus 202 ~---~~~~ll~~~~~~LkpgG~l~~~~g 226 (289)
. .....+..+.+.++|+|.+++...
T Consensus 129 ~~~~~~~~~~~~~~~~l~~~g~~~~~~~ 156 (257)
T COG0500 129 LHLLPPAKALRELLRVLKPGGRLVLSDL 156 (257)
T ss_pred hhcCCHHHHHHHHHHhcCCCcEEEEEec
Confidence 1 257899999999999999987653
No 234
>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=98.19 E-value=7.9e-05 Score=64.32 Aligned_cols=146 Identities=14% Similarity=0.093 Sum_probs=109.2
Q ss_pred CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCC-CEEEEeccccccCCCCcCCCCceEEEEcC
Q 022962 122 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLL-NVQIVRGRAETLGKDVSFREQYDVAVARA 200 (289)
Q Consensus 122 ~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~-ni~~~~~d~~~~~~~~~~~~~fD~V~sn~ 200 (289)
+.++.||||=.|+++..|-+..+...+++.|+++..++.|..+...+++. .+++..+|-...-. .+..+|.|+.-+
T Consensus 17 ~~~iaDIGsDHAYLp~~Lv~~~~~~~~va~eV~~gpl~~a~~~v~~~~l~~~i~vr~~dgl~~l~---~~d~~d~ivIAG 93 (226)
T COG2384 17 GARIADIGSDHAYLPIYLVKNNPASTAVAGEVVPGPLESAIRNVKKNNLSERIDVRLGDGLAVLE---LEDEIDVIVIAG 93 (226)
T ss_pred CCceeeccCchhHhHHHHHhcCCcceEEEeecccCHHHHHHHHHHhcCCcceEEEeccCCccccC---ccCCcCEEEEeC
Confidence 56699999999999999999999999999999999999999999999874 58888888754321 134799999876
Q ss_pred cc--cHHHHHHHHccccccCeEEEEEEcCCcHHHHHHHHHHHHHhCCeEeEEeeeecCCCCCceEEEEEEecCCCCCCC
Q 022962 201 VA--EMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLLQLCSVESQSPFGQRTAVVCLKSRRTPKKY 277 (289)
Q Consensus 201 ~~--~~~~ll~~~~~~LkpgG~l~~~~g~~~~~ei~~~~~~l~~~g~~~~~~~~~~~~~~~~~r~lv~~~k~~~~p~~~ 277 (289)
+. -+..++++-...|+.=-+|++ .+..+..++.+. +...+|.++....++ .......++++++.. .+..|
T Consensus 94 MGG~lI~~ILee~~~~l~~~~rlIL-QPn~~~~~LR~~---L~~~~~~I~~E~ile--E~~kiYEIlv~e~~~-~~~~~ 165 (226)
T COG2384 94 MGGTLIREILEEGKEKLKGVERLIL-QPNIHTYELREW---LSANSYEIKAETILE--EDGKIYEILVVEKSS-KPALY 165 (226)
T ss_pred CcHHHHHHHHHHhhhhhcCcceEEE-CCCCCHHHHHHH---HHhCCceeeeeeeec--ccCeEEEEEEEecCC-chhhh
Confidence 54 468889888888864445553 555667676664 558999988776553 334455677777664 34333
No 235
>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]
Probab=98.19 E-value=1.3e-05 Score=71.93 Aligned_cols=99 Identities=14% Similarity=0.095 Sum_probs=71.3
Q ss_pred CCeEEEEcCCCCh----HHHHHHHHCC-----CCEEEEEeCChHHHHHHHHH------H-HHc--------------C--
Q 022962 122 NLKLVDVGTGAGL----PGLVLAIACP-----DWKVTLLESMNKRCVFLEHA------V-SLT--------------Q-- 169 (289)
Q Consensus 122 ~~~VLDiGcG~G~----~~l~la~~~p-----~~~V~~iD~s~~~l~~a~~~------~-~~~--------------~-- 169 (289)
.-+|+-.||+||- +++.+....+ ..+|+|.|+|..+++.|+.- . +.. |
T Consensus 97 ~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G~Y~~~~~~~~~~~~~~~ryF~~~~~~~y 176 (268)
T COG1352 97 PIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAGIYPSRELLRGLPPELLRRYFERGGDGSY 176 (268)
T ss_pred ceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhcCCCChhHhhccCCHHHHhhhEeecCCCcE
Confidence 5799999999996 4455555554 47999999999999999761 1 000 1
Q ss_pred -----C-CCEEEEeccccccCCCCcCCCCceEEEEcCcc------cHHHHHHHHccccccCeEEEE
Q 022962 170 -----L-LNVQIVRGRAETLGKDVSFREQYDVAVARAVA------EMRILAEYCLPLVRVGGLFVA 223 (289)
Q Consensus 170 -----l-~ni~~~~~d~~~~~~~~~~~~~fD~V~sn~~~------~~~~ll~~~~~~LkpgG~l~~ 223 (289)
+ ++|+|-+.|+.+-.. +.+.||+|+|+.+. .-..+++..+..|+|||+|++
T Consensus 177 ~v~~~ir~~V~F~~~NLl~~~~---~~~~fD~IfCRNVLIYFd~~~q~~il~~f~~~L~~gG~Lfl 239 (268)
T COG1352 177 RVKEELRKMVRFRRHNLLDDSP---FLGKFDLIFCRNVLIYFDEETQERILRRFADSLKPGGLLFL 239 (268)
T ss_pred EEChHHhcccEEeecCCCCCcc---ccCCCCEEEEcceEEeeCHHHHHHHHHHHHHHhCCCCEEEE
Confidence 0 135666655544321 34679999999643 457899999999999999987
No 236
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=98.12 E-value=0.00013 Score=65.45 Aligned_cols=75 Identities=16% Similarity=0.126 Sum_probs=60.2
Q ss_pred CCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCcCCCCceEEEEc
Q 022962 121 SNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVAR 199 (289)
Q Consensus 121 ~~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~~~~~fD~V~sn 199 (289)
++..|+|||.|+|.++..|+... .+|+++|+++..++.+++... .-+|++++++|+.++............|++|
T Consensus 30 ~~~~VlEiGpG~G~lT~~L~~~~--~~v~~vE~d~~~~~~L~~~~~--~~~~~~vi~~D~l~~~~~~~~~~~~~~vv~N 104 (262)
T PF00398_consen 30 EGDTVLEIGPGPGALTRELLKRG--KRVIAVEIDPDLAKHLKERFA--SNPNVEVINGDFLKWDLYDLLKNQPLLVVGN 104 (262)
T ss_dssp TTSEEEEESSTTSCCHHHHHHHS--SEEEEEESSHHHHHHHHHHCT--TCSSEEEEES-TTTSCGGGHCSSSEEEEEEE
T ss_pred CCCEEEEeCCCCccchhhHhccc--CcceeecCcHhHHHHHHHHhh--hcccceeeecchhccccHHhhcCCceEEEEE
Confidence 47899999999999999999874 799999999999998888554 3348999999999876542223466788888
No 237
>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation
Probab=98.10 E-value=3.9e-05 Score=69.30 Aligned_cols=124 Identities=15% Similarity=0.126 Sum_probs=77.2
Q ss_pred CCeEEEEcCCCChHHHHHHHHCC-CCEEEEEeCChHHHHHHHHHHHHcCCC-CEEEEeccccccCCCCcCCCCceEEEEc
Q 022962 122 NLKLVDVGTGAGLPGLVLAIACP-DWKVTLLESMNKRCVFLEHAVSLTQLL-NVQIVRGRAETLGKDVSFREQYDVAVAR 199 (289)
Q Consensus 122 ~~~VLDiGcG~G~~~l~la~~~p-~~~V~~iD~s~~~l~~a~~~~~~~~l~-ni~~~~~d~~~~~~~~~~~~~fD~V~sn 199 (289)
+.+|||+|||+|.-.......++ -.+++++|.|+.|++.++...+..... +.........+.. .+ ...|+|++.
T Consensus 34 P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~---~~-~~~DLvi~s 109 (274)
T PF09243_consen 34 PRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLLRAGPNNRNAEWRRVLYRDFL---PF-PPDDLVIAS 109 (274)
T ss_pred CceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHhcccccccchhhhhhhcccc---cC-CCCcEEEEe
Confidence 56999999999986555555455 358999999999999999977654321 1111111111111 11 234999976
Q ss_pred C----c--ccHHHHHHHHccccccCeEEEEEE-cC-CcHHHHHHHHHHHHHhCCeEeEEe
Q 022962 200 A----V--AEMRILAEYCLPLVRVGGLFVAAK-GH-DPQEEVKNSERAVQLMGASLLQLC 251 (289)
Q Consensus 200 ~----~--~~~~~ll~~~~~~LkpgG~l~~~~-g~-~~~~ei~~~~~~l~~~g~~~~~~~ 251 (289)
. + .....+++.+...+.+ .|+++. |. ...+.+.++-+.+...|+.++.=|
T Consensus 110 ~~L~EL~~~~r~~lv~~LW~~~~~--~LVlVEpGt~~Gf~~i~~aR~~l~~~~~~v~APC 167 (274)
T PF09243_consen 110 YVLNELPSAARAELVRSLWNKTAP--VLVLVEPGTPAGFRRIAEARDQLLEKGAHVVAPC 167 (274)
T ss_pred hhhhcCCchHHHHHHHHHHHhccC--cEEEEcCCChHHHHHHHHHHHHHhhCCCceECCC
Confidence 2 2 3456777777666655 665544 43 334556666677777788776544
No 238
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=98.07 E-value=3.7e-05 Score=70.19 Aligned_cols=78 Identities=9% Similarity=0.046 Sum_probs=62.9
Q ss_pred CCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCC-c-CCCCceEEEE
Q 022962 121 SNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDV-S-FREQYDVAVA 198 (289)
Q Consensus 121 ~~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~-~-~~~~fD~V~s 198 (289)
+++.++|.=+|.|.-+..++...+.++|+|+|.++.+++.+++..+..+ .++++++++..++.... . ..+++|.|+.
T Consensus 20 ~ggiyVD~TlG~GGHS~~iL~~l~~g~vigiD~D~~Al~~ak~~L~~~~-~R~~~i~~nF~~l~~~l~~~~~~~vDgIl~ 98 (305)
T TIGR00006 20 PDGIYIDCTLGFGGHSKAILEQLGTGRLIGIDRDPQAIAFAKERLSDFE-GRVVLIHDNFANFFEHLDELLVTKIDGILV 98 (305)
T ss_pred CCCEEEEeCCCChHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHhhcC-CcEEEEeCCHHHHHHHHHhcCCCcccEEEE
Confidence 4779999999999999999988777999999999999999999877653 47999999888763211 0 1246898888
Q ss_pred c
Q 022962 199 R 199 (289)
Q Consensus 199 n 199 (289)
+
T Consensus 99 D 99 (305)
T TIGR00006 99 D 99 (305)
T ss_pred e
Confidence 6
No 239
>KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification]
Probab=98.06 E-value=5.6e-05 Score=70.74 Aligned_cols=108 Identities=17% Similarity=0.166 Sum_probs=87.1
Q ss_pred CCCCCCeEEEEcCCCChHHHHHHHHC-CCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCcCCCCceEE
Q 022962 118 SCNSNLKLVDVGTGAGLPGLVLAIAC-PDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVA 196 (289)
Q Consensus 118 ~~~~~~~VLDiGcG~G~~~l~la~~~-p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~~~~~fD~V 196 (289)
..+++.+|||+|+-.|.=+..+|... ..+.|+|.|.+...+...+.|+.++|.+|..+.+.|..+++.. .+..+||-|
T Consensus 238 ~Pq~gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n~~r~~~l~~n~~rlGv~ntiv~n~D~~ef~~~-~~~~~fDRV 316 (460)
T KOG1122|consen 238 DPQPGERILDMCAAPGGKTTHIAALMKNTGVIFANDSNENRLKSLKANLHRLGVTNTIVSNYDGREFPEK-EFPGSFDRV 316 (460)
T ss_pred CCCCCCeecchhcCCCchHHHHHHHHcCCceEEecccchHHHHHHHHHHHHhCCCceEEEccCccccccc-ccCccccee
Confidence 34668999999999999887777553 4589999999999999999999999999988888888876533 244589999
Q ss_pred EEcCc-------------------------cc-HHHHHHHHccccccCeEEEEEEc
Q 022962 197 VARAV-------------------------AE-MRILAEYCLPLVRVGGLFVAAKG 226 (289)
Q Consensus 197 ~sn~~-------------------------~~-~~~ll~~~~~~LkpgG~l~~~~g 226 (289)
+-.|. .. -++++..+.+++++||+|+...-
T Consensus 317 LLDAPCSGtgvi~K~~~vkt~k~~~di~~~~~LQr~LllsAi~lv~~GGvLVYSTC 372 (460)
T KOG1122|consen 317 LLDAPCSGTGVISKDQSVKTNKTVKDILRYAHLQRELLLSAIDLVKAGGVLVYSTC 372 (460)
T ss_pred eecCCCCCCcccccccccccchhHHHHHHhHHHHHHHHHHHHhhccCCcEEEEEee
Confidence 97630 01 26888899999999999986543
No 240
>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D.
Probab=98.06 E-value=2.4e-06 Score=65.59 Aligned_cols=96 Identities=20% Similarity=0.214 Sum_probs=43.1
Q ss_pred EEEcCCCChHHHHHHHHCCC---CEEEEEeCChHHHHHHHHHHHHcCCC-CEEEEeccccccCCCCcCCCCceEEEEcCc
Q 022962 126 VDVGTGAGLPGLVLAIACPD---WKVTLLESMNKRCVFLEHAVSLTQLL-NVQIVRGRAETLGKDVSFREQYDVAVARAV 201 (289)
Q Consensus 126 LDiGcG~G~~~l~la~~~p~---~~V~~iD~s~~~l~~a~~~~~~~~l~-ni~~~~~d~~~~~~~~~~~~~fD~V~sn~~ 201 (289)
|+|||..|..++.++...+. .+++++|..+. .+..++.+++.++. ++++++++..+.-... ..++||+|+..+.
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~-~~~~~~~~~~~~~~~~~~~~~g~s~~~l~~~-~~~~~dli~iDg~ 78 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPG-DEQAQEIIKKAGLSDRVEFIQGDSPDFLPSL-PDGPIDLIFIDGD 78 (106)
T ss_dssp --------------------------EEEESS-------------GGG-BTEEEEES-THHHHHHH-HH--EEEEEEES-
T ss_pred CccccccccccccccccccccccCCEEEEECCCc-ccccchhhhhcCCCCeEEEEEcCcHHHHHHc-CCCCEEEEEECCC
Confidence 68999999999888866533 37999999995 33445555555553 6999999987653211 1378999999864
Q ss_pred ---ccHHHHHHHHccccccCeEEEE
Q 022962 202 ---AEMRILAEYCLPLVRVGGLFVA 223 (289)
Q Consensus 202 ---~~~~~ll~~~~~~LkpgG~l~~ 223 (289)
.....-++.+.+.|+|||.+++
T Consensus 79 H~~~~~~~dl~~~~~~l~~ggviv~ 103 (106)
T PF13578_consen 79 HSYEAVLRDLENALPRLAPGGVIVF 103 (106)
T ss_dssp --HHHHHHHHHHHGGGEEEEEEEEE
T ss_pred CCHHHHHHHHHHHHHHcCCCeEEEE
Confidence 3456677888999999999875
No 241
>KOG3115 consensus Methyltransferase-like protein [General function prediction only]
Probab=98.06 E-value=2.6e-05 Score=66.38 Aligned_cols=105 Identities=17% Similarity=0.184 Sum_probs=75.5
Q ss_pred CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcC-------CCCEEEEeccccccCCCCcCCCC--
Q 022962 122 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQ-------LLNVQIVRGRAETLGKDVSFREQ-- 192 (289)
Q Consensus 122 ~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~-------l~ni~~~~~d~~~~~~~~~~~~~-- 192 (289)
...+.|||||-|.+.+.|+-.+|+.-|.|+||-.+..++.++.++.++ ..|+.+++.+...+-......++
T Consensus 61 kvefaDIGCGyGGLlv~Lsp~fPdtLiLGmEIR~KVsdYVk~RI~ALR~~~a~~~~~ni~vlr~namk~lpn~f~kgqLs 140 (249)
T KOG3115|consen 61 KVEFADIGCGYGGLLMKLAPKFPDTLILGMEIRDKVSDYVKERIQALRRTSAEGQYPNISVLRTNAMKFLPNFFEKGQLS 140 (249)
T ss_pred cceEEeeccCccchhhhccccCccceeeeehhhHHHHHHHHHHHHHHhccccccccccceeeeccchhhccchhhhcccc
Confidence 457899999999999999999999999999999999999999888876 56788887777654322111111
Q ss_pred ceEEEEcC--c--------ccHHHHHHHHccccccCeEEEEEEc
Q 022962 193 YDVAVARA--V--------AEMRILAEYCLPLVRVGGLFVAAKG 226 (289)
Q Consensus 193 fD~V~sn~--~--------~~~~~ll~~~~~~LkpgG~l~~~~g 226 (289)
=++.+... + ---..++.+..-+|++||.++....
T Consensus 141 kmff~fpdpHfk~~khk~rii~~~l~~eyay~l~~gg~~ytitD 184 (249)
T KOG3115|consen 141 KMFFLFPDPHFKARKHKWRIITSTLLSEYAYVLREGGILYTITD 184 (249)
T ss_pred cceeecCChhHhhhhccceeechhHHHHHHhhhhcCceEEEEee
Confidence 12222211 0 0124567777779999999997653
No 242
>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]
Probab=98.01 E-value=0.00011 Score=67.76 Aligned_cols=152 Identities=15% Similarity=0.153 Sum_probs=104.6
Q ss_pred CCCCCCeEEEEcCCCChHHHHHHHHCC-CCEEEEEeCChHHHHHHHHH--HHHcC---C--CCEEEEeccccccCCCCcC
Q 022962 118 SCNSNLKLVDVGTGAGLPGLVLAIACP-DWKVTLLESMNKRCVFLEHA--VSLTQ---L--LNVQIVRGRAETLGKDVSF 189 (289)
Q Consensus 118 ~~~~~~~VLDiGcG~G~~~l~la~~~p-~~~V~~iD~s~~~l~~a~~~--~~~~~---l--~ni~~~~~d~~~~~~~~~~ 189 (289)
+.+...+||=+|-|.|.-...+. ++| -.+|+.||.+++|++.++++ .+..+ . .+++++..|+.++-.. -
T Consensus 286 ~~~~a~~vLvlGGGDGLAlRell-kyP~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~wlr~--a 362 (508)
T COG4262 286 SVRGARSVLVLGGGDGLALRELL-KYPQVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQWLRT--A 362 (508)
T ss_pred cccccceEEEEcCCchHHHHHHH-hCCCcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccHHHHHHh--h
Confidence 34456799999999998666665 467 57999999999999999953 22221 2 3599999999887543 2
Q ss_pred CCCceEEEEcCc-------cc--HHHHHHHHccccccCeEEEEEEcCCc-HHH-HHHHHHHHHHhCCeEeEEeeeecCCC
Q 022962 190 REQYDVAVARAV-------AE--MRILAEYCLPLVRVGGLFVAAKGHDP-QEE-VKNSERAVQLMGASLLQLCSVESQSP 258 (289)
Q Consensus 190 ~~~fD~V~sn~~-------~~--~~~ll~~~~~~LkpgG~l~~~~g~~~-~~e-i~~~~~~l~~~g~~~~~~~~~~~~~~ 258 (289)
.+.||.|+..-. .. -.++..-+.+.|+++|.+++..|... ..+ .=.+.+.++++|+...-.. .|.-.
T Consensus 363 ~~~fD~vIVDl~DP~tps~~rlYS~eFY~ll~~~l~e~Gl~VvQags~y~tp~vfw~i~aTik~AG~~~~Pyh--v~VPT 440 (508)
T COG4262 363 ADMFDVVIVDLPDPSTPSIGRLYSVEFYRLLSRHLAETGLMVVQAGSPYFTPRVFWRIDATIKSAGYRVWPYH--VHVPT 440 (508)
T ss_pred cccccEEEEeCCCCCCcchhhhhhHHHHHHHHHhcCcCceEEEecCCCccCCceeeeehhHHHhCcceeeeeE--EecCc
Confidence 368999998621 11 24677788899999999998766432 222 2234456778997544322 23345
Q ss_pred CCceEEEEEEecCCCC
Q 022962 259 FGQRTAVVCLKSRRTP 274 (289)
Q Consensus 259 ~~~r~lv~~~k~~~~p 274 (289)
.|++-.++..+....+
T Consensus 441 FGeWGf~l~~~~~~~f 456 (508)
T COG4262 441 FGEWGFILAAPGDADF 456 (508)
T ss_pred ccccceeecccccCCC
Confidence 7888888888764443
No 243
>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT). This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].
Probab=97.99 E-value=9.8e-05 Score=66.25 Aligned_cols=129 Identities=16% Similarity=0.161 Sum_probs=88.5
Q ss_pred CCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHc--------------------------------
Q 022962 121 SNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLT-------------------------------- 168 (289)
Q Consensus 121 ~~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~-------------------------------- 168 (289)
...+||-=|||-|.++..+|.. +..+.|.|.|--|+-..+-.....
T Consensus 56 ~~~~VLVPGsGLGRLa~Eia~~--G~~~~gnE~S~~Mll~s~fiLn~~~~~~~~~I~Pf~~~~sn~~~~~dqlr~v~iPD 133 (270)
T PF07942_consen 56 SKIRVLVPGSGLGRLAWEIAKL--GYAVQGNEFSYFMLLASNFILNHCSQPNQFTIYPFVHSFSNQKSREDQLRPVRIPD 133 (270)
T ss_pred CccEEEEcCCCcchHHHHHhhc--cceEEEEEchHHHHHHHHHHHcccCCCCcEEEecceecccCCCCHHHhCCceEeCC
Confidence 3679999999999999999977 789999999999976655432210
Q ss_pred --------CCCCEEEEeccccccCCCCcCCCCceEEEEcC----cccHHHHHHHHccccccCeEEEEEEcC-----CcH-
Q 022962 169 --------QLLNVQIVRGRAETLGKDVSFREQYDVAVARA----VAEMRILAEYCLPLVRVGGLFVAAKGH-----DPQ- 230 (289)
Q Consensus 169 --------~l~ni~~~~~d~~~~~~~~~~~~~fD~V~sn~----~~~~~~ll~~~~~~LkpgG~l~~~~g~-----~~~- 230 (289)
...++....||..++-......++||+|++.- -.++-+.++.+.++|||||..+ -.|+ ...
T Consensus 134 v~p~~~~~~~~~~sm~aGDF~e~y~~~~~~~~~d~VvT~FFIDTA~Ni~~Yi~tI~~lLkpgG~WI-N~GPLlyh~~~~~ 212 (270)
T PF07942_consen 134 VDPSSELPSPSNLSMCAGDFLEVYGPDENKGSFDVVVTCFFIDTAENIIEYIETIEHLLKPGGYWI-NFGPLLYHFEPMS 212 (270)
T ss_pred cCcccccCCCCceeEecCccEEecCCcccCCcccEEEEEEEeechHHHHHHHHHHHHHhccCCEEE-ecCCccccCCCCC
Confidence 00134555666665533221236899999873 2367889999999999999766 2332 111
Q ss_pred --------HHHHHHHHHHHHhCCeEeEEee
Q 022962 231 --------EEVKNSERAVQLMGASLLQLCS 252 (289)
Q Consensus 231 --------~ei~~~~~~l~~~g~~~~~~~~ 252 (289)
-..+++....+..||++++...
T Consensus 213 ~~~~~sveLs~eEi~~l~~~~GF~~~~~~~ 242 (270)
T PF07942_consen 213 IPNEMSVELSLEEIKELIEKLGFEIEKEES 242 (270)
T ss_pred CCCCcccCCCHHHHHHHHHHCCCEEEEEEE
Confidence 1135566667789999886654
No 244
>KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism]
Probab=97.96 E-value=4.5e-05 Score=65.49 Aligned_cols=107 Identities=19% Similarity=0.216 Sum_probs=82.2
Q ss_pred CCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCcCCCCceEEEEcC
Q 022962 121 SNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARA 200 (289)
Q Consensus 121 ~~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~~~~~fD~V~sn~ 200 (289)
+|.+||.||-|-|++.-.+..+.|. +=+-||..+..+...+...-.. -+||.++.+.+++.... ..++.||-|.-..
T Consensus 101 kggrvLnVGFGMgIidT~iQe~~p~-~H~IiE~hp~V~krmr~~gw~e-k~nViil~g~WeDvl~~-L~d~~FDGI~yDT 177 (271)
T KOG1709|consen 101 KGGRVLNVGFGMGIIDTFIQEAPPD-EHWIIEAHPDVLKRMRDWGWRE-KENVIILEGRWEDVLNT-LPDKHFDGIYYDT 177 (271)
T ss_pred CCceEEEeccchHHHHHHHhhcCCc-ceEEEecCHHHHHHHHhccccc-ccceEEEecchHhhhcc-ccccCcceeEeec
Confidence 5899999999999988777665555 4457999999887776643222 24899999999986443 2357799999886
Q ss_pred c----ccHHHHHHHHccccccCeEEEEEEcCCcH
Q 022962 201 V----AEMRILAEYCLPLVRVGGLFVAAKGHDPQ 230 (289)
Q Consensus 201 ~----~~~~~ll~~~~~~LkpgG~l~~~~g~~~~ 230 (289)
. .++..+.+.+.++|||+|.|-+.-|....
T Consensus 178 y~e~yEdl~~~hqh~~rLLkP~gv~SyfNg~~~~ 211 (271)
T KOG1709|consen 178 YSELYEDLRHFHQHVVRLLKPEGVFSYFNGLGAD 211 (271)
T ss_pred hhhHHHHHHHHHHHHhhhcCCCceEEEecCcccc
Confidence 5 36778888999999999999988765433
No 245
>KOG2730 consensus Methylase [General function prediction only]
Probab=97.95 E-value=5.1e-06 Score=71.40 Aligned_cols=76 Identities=14% Similarity=0.151 Sum_probs=63.3
Q ss_pred CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCC-CEEEEeccccccCCCCcCC-CCceEEEEc
Q 022962 122 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLL-NVQIVRGRAETLGKDVSFR-EQYDVAVAR 199 (289)
Q Consensus 122 ~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~-ni~~~~~d~~~~~~~~~~~-~~fD~V~sn 199 (289)
...|+|.-||.|..++..|.. ...|++||+|+..++.|++|++-.|++ +|+|++||+.++....+++ ..+|+|+..
T Consensus 95 ~~~iidaf~g~gGntiqfa~~--~~~VisIdiDPikIa~AkhNaeiYGI~~rItFI~GD~ld~~~~lq~~K~~~~~vf~s 172 (263)
T KOG2730|consen 95 AEVIVDAFCGVGGNTIQFALQ--GPYVIAIDIDPVKIACARHNAEVYGVPDRITFICGDFLDLASKLKADKIKYDCVFLS 172 (263)
T ss_pred cchhhhhhhcCCchHHHHHHh--CCeEEEEeccHHHHHHHhccceeecCCceeEEEechHHHHHHHHhhhhheeeeeecC
Confidence 568999999999999999977 458999999999999999999999986 4999999999875432222 346788866
No 246
>KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning]
Probab=97.90 E-value=0.00014 Score=61.19 Aligned_cols=94 Identities=16% Similarity=0.198 Sum_probs=62.4
Q ss_pred CCCCeEEEEcCCCChHHHHHHHHC-CCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEec-cccccCC-----CCcCCCC
Q 022962 120 NSNLKLVDVGTGAGLPGLVLAIAC-PDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRG-RAETLGK-----DVSFREQ 192 (289)
Q Consensus 120 ~~~~~VLDiGcG~G~~~l~la~~~-p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~-d~~~~~~-----~~~~~~~ 192 (289)
.++.+|||+||-.|.|+-..-+.. |.+.|.|||+-.- ...+.+.++++ |+.+... +...+.+
T Consensus 68 ~p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDllh~-----------~p~~Ga~~i~~~dvtdp~~~~ki~e~lp~r~ 136 (232)
T KOG4589|consen 68 RPEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLLHI-----------EPPEGATIIQGNDVTDPETYRKIFEALPNRP 136 (232)
T ss_pred CCCCEEEEccCCCChHHHHHHHhhCCCceEEEEeeeec-----------cCCCCcccccccccCCHHHHHHHHHhCCCCc
Confidence 458899999999999998766654 8999999998431 12334566665 6654311 0112368
Q ss_pred ceEEEEcC--------cccH-------HHHHHHHccccccCeEEEEE
Q 022962 193 YDVAVARA--------VAEM-------RILAEYCLPLVRVGGLFVAA 224 (289)
Q Consensus 193 fD~V~sn~--------~~~~-------~~ll~~~~~~LkpgG~l~~~ 224 (289)
.|+|+|.. ..+. ..++-.+...++|+|.|++-
T Consensus 137 VdvVlSDMapnaTGvr~~Dh~~~i~LC~s~l~~al~~~~p~g~fvcK 183 (232)
T KOG4589|consen 137 VDVVLSDMAPNATGVRIRDHYRSIELCDSALLFALTLLIPNGSFVCK 183 (232)
T ss_pred ccEEEeccCCCCcCcchhhHHHHHHHHHHHHHHhhhhcCCCcEEEEE
Confidence 99999962 1122 23444556778899999863
No 247
>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]
Probab=97.90 E-value=2.4e-05 Score=73.14 Aligned_cols=103 Identities=20% Similarity=0.265 Sum_probs=82.8
Q ss_pred CCCCCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCC-EEEEeccccccCCCCcCCCCceEE
Q 022962 118 SCNSNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLN-VQIVRGRAETLGKDVSFREQYDVA 196 (289)
Q Consensus 118 ~~~~~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~n-i~~~~~d~~~~~~~~~~~~~fD~V 196 (289)
++.++..++|+|||.|.+...++. +..+.++|+|.++.-+..+.......++++ -.++.+|+...+.+ ++.||.+
T Consensus 107 ~~~~~~~~~~~~~g~~~~~~~i~~-f~~~~~~Gl~~n~~e~~~~~~~~~~~~l~~k~~~~~~~~~~~~fe---dn~fd~v 182 (364)
T KOG1269|consen 107 SCFPGSKVLDVGTGVGGPSRYIAV-FKKAGVVGLDNNAYEAFRANELAKKAYLDNKCNFVVADFGKMPFE---DNTFDGV 182 (364)
T ss_pred cCcccccccccCcCcCchhHHHHH-hccCCccCCCcCHHHHHHHHHHHHHHHhhhhcceehhhhhcCCCC---ccccCcE
Confidence 445577899999999999988885 467899999999988888888776666654 44467777776654 4789999
Q ss_pred EEcC----cccHHHHHHHHccccccCeEEEEE
Q 022962 197 VARA----VAEMRILAEYCLPLVRVGGLFVAA 224 (289)
Q Consensus 197 ~sn~----~~~~~~ll~~~~~~LkpgG~l~~~ 224 (289)
-+.. ..+...++++++++++|||+++..
T Consensus 183 ~~ld~~~~~~~~~~~y~Ei~rv~kpGG~~i~~ 214 (364)
T KOG1269|consen 183 RFLEVVCHAPDLEKVYAEIYRVLKPGGLFIVK 214 (364)
T ss_pred EEEeecccCCcHHHHHHHHhcccCCCceEEeH
Confidence 9873 457889999999999999999964
No 248
>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.88 E-value=0.00042 Score=60.59 Aligned_cols=140 Identities=17% Similarity=0.156 Sum_probs=92.9
Q ss_pred CCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCE-EEEeccccccCCCCcCCCCceEEEEc
Q 022962 121 SNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNV-QIVRGRAETLGKDVSFREQYDVAVAR 199 (289)
Q Consensus 121 ~~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni-~~~~~d~~~~~~~~~~~~~fD~V~sn 199 (289)
++..+||||+-||.++-.+.+ ....+|+|||..-..+.+- .+. + .+| .+...++..+... .+.+..|++++.
T Consensus 79 k~kv~LDiGsSTGGFTd~lLq-~gAk~VyavDVG~~Ql~~k---LR~-d-~rV~~~E~tN~r~l~~~-~~~~~~d~~v~D 151 (245)
T COG1189 79 KGKVVLDIGSSTGGFTDVLLQ-RGAKHVYAVDVGYGQLHWK---LRN-D-PRVIVLERTNVRYLTPE-DFTEKPDLIVID 151 (245)
T ss_pred CCCEEEEecCCCccHHHHHHH-cCCcEEEEEEccCCccCHh---Hhc-C-CcEEEEecCChhhCCHH-HcccCCCeEEEE
Confidence 488999999999999887664 4678999999976543322 111 1 243 4445677766543 344578999987
Q ss_pred -CcccHHHHHHHHccccccCeEEEEEE------c------------C-CcHHHHHHHHHHHHHhCCeEeEEeeeecCCCC
Q 022962 200 -AVAEMRILAEYCLPLVRVGGLFVAAK------G------------H-DPQEEVKNSERAVQLMGASLLQLCSVESQSPF 259 (289)
Q Consensus 200 -~~~~~~~ll~~~~~~LkpgG~l~~~~------g------------~-~~~~ei~~~~~~l~~~g~~~~~~~~~~~~~~~ 259 (289)
++-.+..++..+..+++++|.++... | + .+..-+.++.+.+...||.+..+..-..+...
T Consensus 152 vSFISL~~iLp~l~~l~~~~~~~v~LvKPQFEagr~~v~kkGvv~d~~~~~~v~~~i~~~~~~~g~~~~gl~~Spi~G~~ 231 (245)
T COG1189 152 VSFISLKLILPALLLLLKDGGDLVLLVKPQFEAGREQVGKKGVVRDPKLHAEVLSKIENFAKELGFQVKGLIKSPIKGGK 231 (245)
T ss_pred eehhhHHHHHHHHHHhcCCCceEEEEecchhhhhhhhcCcCceecCcchHHHHHHHHHHHHhhcCcEEeeeEccCccCCC
Confidence 56678889999999999999888542 1 1 12233455666677889999988754444444
Q ss_pred CceEEEEE
Q 022962 260 GQRTAVVC 267 (289)
Q Consensus 260 ~~r~lv~~ 267 (289)
|-...++.
T Consensus 232 GNiE~l~~ 239 (245)
T COG1189 232 GNIEFLLL 239 (245)
T ss_pred CcEeeeee
Confidence 43333333
No 249
>PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2.1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: S-AdoMet + tRNA = S-adenosyl-L-homocysteine + tRNA containing N2-methylguanine The TRM1 gene of Saccharomyces cerevisiae is necessary for the N2,N2-dimethylguanosine modification of both mitochondrial and cytoplasmic tRNAs []. The enzyme is found in both eukaryotes and archaea [].; GO: 0003723 RNA binding, 0004809 tRNA (guanine-N2-)-methyltransferase activity, 0008033 tRNA processing; PDB: 2YTZ_B 2DUL_A 2EJU_A 2EJT_A 3AXT_A 3AXS_A.
Probab=97.85 E-value=7.3e-05 Score=70.46 Aligned_cols=102 Identities=20% Similarity=0.246 Sum_probs=80.2
Q ss_pred CCeEEEEcCCCChHHHHHHHHCC-CCEEEEEeCChHHHHHHHHHHHHcCCCC--EEEEeccccccCCCCcCCCCceEEEE
Q 022962 122 NLKLVDVGTGAGLPGLVLAIACP-DWKVTLLESMNKRCVFLEHAVSLTQLLN--VQIVRGRAETLGKDVSFREQYDVAVA 198 (289)
Q Consensus 122 ~~~VLDiGcG~G~~~l~la~~~p-~~~V~~iD~s~~~l~~a~~~~~~~~l~n--i~~~~~d~~~~~~~~~~~~~fD~V~s 198 (289)
+.+|||.=+|||.=|+..+.+.+ ..+|++-|+|+++++.+++|++.++++. +++.+.|+..+-. ...+.||+|=.
T Consensus 50 ~~~~lDalaasGvR~iRy~~E~~~~~~v~~NDi~~~a~~~i~~N~~~N~~~~~~~~v~~~DAn~ll~--~~~~~fD~IDl 127 (377)
T PF02005_consen 50 PIRVLDALAASGVRGIRYAKELAGVDKVTANDISPEAVELIKRNLELNGLEDERIEVSNMDANVLLY--SRQERFDVIDL 127 (377)
T ss_dssp -EEEEETT-TTSHHHHHHHHH-SSECEEEEEES-HHHHHHHHHHHHHCT-SGCCEEEEES-HHHHHC--HSTT-EEEEEE
T ss_pred CceEEeccccccHHHHHHHHHcCCCCEEEEecCCHHHHHHHHHhHhhccccCceEEEehhhHHHHhh--hccccCCEEEe
Confidence 45899999999999999999854 4799999999999999999999999875 8899999988642 12478999999
Q ss_pred cCcccHHHHHHHHccccccCeEEEEEE
Q 022962 199 RAVAEMRILAEYCLPLVRVGGLFVAAK 225 (289)
Q Consensus 199 n~~~~~~~ll~~~~~~LkpgG~l~~~~ 225 (289)
.++.....++..+.+.++.||.+.+..
T Consensus 128 DPfGSp~pfldsA~~~v~~gGll~vTa 154 (377)
T PF02005_consen 128 DPFGSPAPFLDSALQAVKDGGLLCVTA 154 (377)
T ss_dssp --SS--HHHHHHHHHHEEEEEEEEEEE
T ss_pred CCCCCccHhHHHHHHHhhcCCEEEEec
Confidence 999999999999999999999999753
No 250
>PRK10742 putative methyltransferase; Provisional
Probab=97.82 E-value=8.4e-05 Score=65.69 Aligned_cols=77 Identities=19% Similarity=0.242 Sum_probs=63.7
Q ss_pred CCCC--eEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHc------CC---CCEEEEeccccccCCCCc
Q 022962 120 NSNL--KLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLT------QL---LNVQIVRGRAETLGKDVS 188 (289)
Q Consensus 120 ~~~~--~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~------~l---~ni~~~~~d~~~~~~~~~ 188 (289)
+++. +|||+-+|+|..|+.+|.. +++|+++|.++.....++++.+.. +. .+++++++|..++-..
T Consensus 85 k~g~~p~VLD~TAGlG~Da~~las~--G~~V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~~da~~~L~~-- 160 (250)
T PRK10742 85 KGDYLPDVVDATAGLGRDAFVLASV--GCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTD-- 160 (250)
T ss_pred CCCCCCEEEECCCCccHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEEeCcHHHHHhh--
Confidence 3455 8999999999999999965 678999999999999999998885 32 4699999999886432
Q ss_pred CCCCceEEEEcC
Q 022962 189 FREQYDVAVARA 200 (289)
Q Consensus 189 ~~~~fD~V~sn~ 200 (289)
...+||+|+...
T Consensus 161 ~~~~fDVVYlDP 172 (250)
T PRK10742 161 ITPRPQVVYLDP 172 (250)
T ss_pred CCCCCcEEEECC
Confidence 235799999985
No 251
>COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=97.81 E-value=7.1e-05 Score=69.16 Aligned_cols=101 Identities=20% Similarity=0.283 Sum_probs=87.9
Q ss_pred CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCcCCCCceEEEEcCc
Q 022962 122 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARAV 201 (289)
Q Consensus 122 ~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~~~~~fD~V~sn~~ 201 (289)
..+|+|-=||||+=|+.+|...+..+|++-|+|+++++.+++|++.+...+..+++.|+..+-.. ....||+|=...+
T Consensus 53 ~~~v~DalsatGiRgIRya~E~~~~~v~lNDisp~Avelik~Nv~~N~~~~~~v~n~DAN~lm~~--~~~~fd~IDiDPF 130 (380)
T COG1867 53 PKRVLDALSATGIRGIRYAVETGVVKVVLNDISPKAVELIKENVRLNSGEDAEVINKDANALLHE--LHRAFDVIDIDPF 130 (380)
T ss_pred CeEEeecccccchhHhhhhhhcCccEEEEccCCHHHHHHHHHHHHhcCcccceeecchHHHHHHh--cCCCccEEecCCC
Confidence 46899999999999999999987779999999999999999999999555777788888876432 1368999999988
Q ss_pred ccHHHHHHHHccccccCeEEEEE
Q 022962 202 AEMRILAEYCLPLVRVGGLFVAA 224 (289)
Q Consensus 202 ~~~~~ll~~~~~~LkpgG~l~~~ 224 (289)
..+..+++.+.+.++.||.+.+-
T Consensus 131 GSPaPFlDaA~~s~~~~G~l~vT 153 (380)
T COG1867 131 GSPAPFLDAALRSVRRGGLLCVT 153 (380)
T ss_pred CCCchHHHHHHHHhhcCCEEEEE
Confidence 88889999999999999999864
No 252
>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein.
Probab=97.80 E-value=0.00027 Score=60.99 Aligned_cols=127 Identities=13% Similarity=0.073 Sum_probs=83.0
Q ss_pred CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCcCCCCceEEEEcC-
Q 022962 122 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARA- 200 (289)
Q Consensus 122 ~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~~~~~fD~V~sn~- 200 (289)
..++|||||=+....+. ..+-..|+.||+++. .-.+.+.|..+.+.+....++||+|++.-
T Consensus 52 ~lrlLEVGals~~N~~s---~~~~fdvt~IDLns~---------------~~~I~qqDFm~rplp~~~~e~FdvIs~SLV 113 (219)
T PF11968_consen 52 KLRLLEVGALSTDNACS---TSGWFDVTRIDLNSQ---------------HPGILQQDFMERPLPKNESEKFDVISLSLV 113 (219)
T ss_pred cceEEeecccCCCCccc---ccCceeeEEeecCCC---------------CCCceeeccccCCCCCCcccceeEEEEEEE
Confidence 46999999986654333 234568999999651 22345677777654333357899999862
Q ss_pred ---cc---cHHHHHHHHccccccCeE-----EEEEEcCC-----cHHHHHHHHHHHHHhCCeEeEEeeeecCCCCCceEE
Q 022962 201 ---VA---EMRILAEYCLPLVRVGGL-----FVAAKGHD-----PQEEVKNSERAVQLMGASLLQLCSVESQSPFGQRTA 264 (289)
Q Consensus 201 ---~~---~~~~ll~~~~~~LkpgG~-----l~~~~g~~-----~~~ei~~~~~~l~~~g~~~~~~~~~~~~~~~~~r~l 264 (289)
+. ..-++++.+.++|+|+|. |+++.+.. .--....+...+...||..++.. ....-++
T Consensus 114 LNfVP~p~~RG~Ml~r~~~fL~~~g~~~~~~LFlVlP~~Cv~NSRy~~~~~l~~im~~LGf~~~~~~------~~~Kl~y 187 (219)
T PF11968_consen 114 LNFVPDPKQRGEMLRRAHKFLKPPGLSLFPSLFLVLPLPCVTNSRYMTEERLREIMESLGFTRVKYK------KSKKLAY 187 (219)
T ss_pred EeeCCCHHHHHHHHHHHHHHhCCCCccCcceEEEEeCchHhhcccccCHHHHHHHHHhCCcEEEEEE------ecCeEEE
Confidence 22 346899999999999999 88776421 11112344556778999876553 2234457
Q ss_pred EEEEecCC
Q 022962 265 VVCLKSRR 272 (289)
Q Consensus 265 v~~~k~~~ 272 (289)
.++++...
T Consensus 188 ~l~r~~~~ 195 (219)
T PF11968_consen 188 WLFRKSGK 195 (219)
T ss_pred EEEeecCC
Confidence 77777644
No 253
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=97.77 E-value=0.00036 Score=64.31 Aligned_cols=104 Identities=14% Similarity=0.034 Sum_probs=71.7
Q ss_pred CCCeEEEEcCCCChHHHHHHHHC----CCCEEEEEeCChHHHHHHHHHHHHcCCCCEEE--EeccccccCC---CCcCCC
Q 022962 121 SNLKLVDVGTGAGLPGLVLAIAC----PDWKVTLLESMNKRCVFLEHAVSLTQLLNVQI--VRGRAETLGK---DVSFRE 191 (289)
Q Consensus 121 ~~~~VLDiGcG~G~~~l~la~~~----p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~--~~~d~~~~~~---~~~~~~ 191 (289)
++..++|+|||+|.=...|.... .....++||+|.++++.+..+...-...++++ +++|..+... ......
T Consensus 76 ~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~~~p~l~v~~l~gdy~~~l~~l~~~~~~~ 155 (319)
T TIGR03439 76 SGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLGNFSHVRCAGLLGTYDDGLAWLKRPENRS 155 (319)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhccCCCeEEEEEEecHHHHHhhcccccccC
Confidence 36689999999998655444332 24689999999999999988877334445544 7888866311 101123
Q ss_pred CceEEEEcC-------cccHHHHHHHHcc-ccccCeEEEEE
Q 022962 192 QYDVAVARA-------VAEMRILAEYCLP-LVRVGGLFVAA 224 (289)
Q Consensus 192 ~fD~V~sn~-------~~~~~~ll~~~~~-~LkpgG~l~~~ 224 (289)
...+++.-+ ......+++.+.+ .|+|||.|++-
T Consensus 156 ~~r~~~flGSsiGNf~~~ea~~fL~~~~~~~l~~~d~lLiG 196 (319)
T TIGR03439 156 RPTTILWLGSSIGNFSRPEAAAFLAGFLATALSPSDSFLIG 196 (319)
T ss_pred CccEEEEeCccccCCCHHHHHHHHHHHHHhhCCCCCEEEEe
Confidence 467777642 2245688899999 99999999874
No 254
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=97.73 E-value=3.3e-05 Score=73.96 Aligned_cols=92 Identities=17% Similarity=0.189 Sum_probs=55.8
Q ss_pred CeEEEEcCCCChHHHHHHHHCCCCEEEEE---eCChHHHHHHHHHHHHcCCCCEEEEecc--ccccCCCCcCCCCceEEE
Q 022962 123 LKLVDVGTGAGLPGLVLAIACPDWKVTLL---ESMNKRCVFLEHAVSLTQLLNVQIVRGR--AETLGKDVSFREQYDVAV 197 (289)
Q Consensus 123 ~~VLDiGcG~G~~~l~la~~~p~~~V~~i---D~s~~~l~~a~~~~~~~~l~ni~~~~~d--~~~~~~~~~~~~~fD~V~ 197 (289)
..+||+|||+|.+|-.|... +..+..+ |..+..+.+|-+ -|+.- +.+- -..++.+ ++.||+|.
T Consensus 119 R~~LDvGcG~aSF~a~l~~r--~V~t~s~a~~d~~~~qvqfale----RGvpa---~~~~~~s~rLPfp---~~~fDmvH 186 (506)
T PF03141_consen 119 RTALDVGCGVASFGAYLLER--NVTTMSFAPNDEHEAQVQFALE----RGVPA---MIGVLGSQRLPFP---SNAFDMVH 186 (506)
T ss_pred EEEEeccceeehhHHHHhhC--CceEEEcccccCCchhhhhhhh----cCcch---hhhhhccccccCC---ccchhhhh
Confidence 47899999999998887644 3333232 333334444433 24321 1111 1234443 58999999
Q ss_pred EcCc-----ccHHHHHHHHccccccCeEEEEEEc
Q 022962 198 ARAV-----AEMRILAEYCLPLVRVGGLFVAAKG 226 (289)
Q Consensus 198 sn~~-----~~~~~ll~~~~~~LkpgG~l~~~~g 226 (289)
|... .+-..++-++-|+|+|||+|+....
T Consensus 187 csrc~i~W~~~~g~~l~evdRvLRpGGyfv~S~p 220 (506)
T PF03141_consen 187 CSRCLIPWHPNDGFLLFEVDRVLRPGGYFVLSGP 220 (506)
T ss_pred cccccccchhcccceeehhhhhhccCceEEecCC
Confidence 8631 1113477899999999999987543
No 255
>COG1568 Predicted methyltransferases [General function prediction only]
Probab=97.72 E-value=0.00034 Score=62.34 Aligned_cols=128 Identities=12% Similarity=0.230 Sum_probs=98.4
Q ss_pred CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCcCCCCceEEEEcCc
Q 022962 122 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARAV 201 (289)
Q Consensus 122 ~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~~~~~fD~V~sn~~ 201 (289)
|..|+=+| -.-..|+++|...-..+|.-||+++..+.+..+.++++|++|++.+.-|+.+.-++ .+.++||+.+..+.
T Consensus 153 gK~I~vvG-DDDLtsia~aLt~mpk~iaVvDIDERli~fi~k~aee~g~~~ie~~~~Dlr~plpe-~~~~kFDvfiTDPp 230 (354)
T COG1568 153 GKEIFVVG-DDDLTSIALALTGMPKRIAVVDIDERLIKFIEKVAEELGYNNIEAFVFDLRNPLPE-DLKRKFDVFITDPP 230 (354)
T ss_pred CCeEEEEc-CchhhHHHHHhcCCCceEEEEechHHHHHHHHHHHHHhCccchhheeehhcccChH-HHHhhCCeeecCch
Confidence 77899999 56666777776544468999999999999999999999999999988888774322 35679999999864
Q ss_pred c---cHHHHHHHHccccccC---eEEEEEEcCCcHHHHHHHHH-HHHHhCCeEeEEe
Q 022962 202 A---EMRILAEYCLPLVRVG---GLFVAAKGHDPQEEVKNSER-AVQLMGASLLQLC 251 (289)
Q Consensus 202 ~---~~~~ll~~~~~~Lkpg---G~l~~~~g~~~~~ei~~~~~-~l~~~g~~~~~~~ 251 (289)
. .++.++..-...||-- |+|.+........+-.++++ ++..+|+-+.++.
T Consensus 231 eTi~alk~FlgRGI~tLkg~~~aGyfgiT~ressidkW~eiQr~lIn~~gvVITdii 287 (354)
T COG1568 231 ETIKALKLFLGRGIATLKGEGCAGYFGITRRESSIDKWREIQRILINEMGVVITDII 287 (354)
T ss_pred hhHHHHHHHHhccHHHhcCCCccceEeeeeccccHHHHHHHHHHHHHhcCeeeHhhh
Confidence 4 5667777666677765 88887766666666666666 6678898777654
No 256
>KOG1331 consensus Predicted methyltransferase [General function prediction only]
Probab=97.58 E-value=0.00015 Score=64.84 Aligned_cols=92 Identities=21% Similarity=0.086 Sum_probs=69.9
Q ss_pred CCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCcCCCCceEEEEcC
Q 022962 121 SNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARA 200 (289)
Q Consensus 121 ~~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~~~~~fD~V~sn~ 200 (289)
.+..++|+|||.|-... ..|.+.++|.|++...+.-++. .|. ..+..+|+..++.. +.+||.+++-+
T Consensus 45 ~gsv~~d~gCGngky~~----~~p~~~~ig~D~c~~l~~~ak~----~~~--~~~~~ad~l~~p~~---~~s~d~~lsia 111 (293)
T KOG1331|consen 45 TGSVGLDVGCGNGKYLG----VNPLCLIIGCDLCTGLLGGAKR----SGG--DNVCRADALKLPFR---EESFDAALSIA 111 (293)
T ss_pred CcceeeecccCCcccCc----CCCcceeeecchhhhhcccccc----CCC--ceeehhhhhcCCCC---CCccccchhhh
Confidence 47889999999996432 2478899999999887766654 121 25677888888765 37899999876
Q ss_pred cc-------cHHHHHHHHccccccCeEEEEEE
Q 022962 201 VA-------EMRILAEYCLPLVRVGGLFVAAK 225 (289)
Q Consensus 201 ~~-------~~~~ll~~~~~~LkpgG~l~~~~ 225 (289)
+. ....+++++.+.|+|||...++.
T Consensus 112 vihhlsT~~RR~~~l~e~~r~lrpgg~~lvyv 143 (293)
T KOG1331|consen 112 VIHHLSTRERRERALEELLRVLRPGGNALVYV 143 (293)
T ss_pred hhhhhhhHHHHHHHHHHHHHHhcCCCceEEEE
Confidence 43 35789999999999999977654
No 257
>KOG2198 consensus tRNA cytosine-5-methylases and related enzymes of the NOL1/NOP2/sun superfamily [Translation, ribosomal structure and biogenesis]
Probab=97.55 E-value=0.0013 Score=60.92 Aligned_cols=108 Identities=18% Similarity=0.124 Sum_probs=79.7
Q ss_pred CCCCCCeEEEEcCCCChHHHHHHHHCC----CCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCC------
Q 022962 118 SCNSNLKLVDVGTGAGLPGLVLAIACP----DWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDV------ 187 (289)
Q Consensus 118 ~~~~~~~VLDiGcG~G~~~l~la~~~p----~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~------ 187 (289)
.++++.+|||+|+-.|.=++.|....- .+.|++-|.+...+..+.+........++.+...|+...+...
T Consensus 152 ~v~p~~~VLDmCAAPG~Kt~qLLeal~~~~~~g~vvaND~d~~R~~~L~~q~~~l~~~~~~v~~~~~~~~p~~~~~~~~~ 231 (375)
T KOG2198|consen 152 GVKPGDKVLDMCAAPGGKTAQLLEALHKDPTRGYVVANDVDPKRLNMLVHQLKRLPSPNLLVTNHDASLFPNIYLKDGND 231 (375)
T ss_pred ccCCCCeeeeeccCCCccHHHHHHHHhcCCCCCeeEecccCHHHHHHHHHHHhccCCcceeeecccceeccccccccCch
Confidence 567899999999999998877655432 2489999999999999999887776667777777766554321
Q ss_pred cCCCCceEEEEcC--------------------------ccc-HHHHHHHHccccccCeEEEEEE
Q 022962 188 SFREQYDVAVARA--------------------------VAE-MRILAEYCLPLVRVGGLFVAAK 225 (289)
Q Consensus 188 ~~~~~fD~V~sn~--------------------------~~~-~~~ll~~~~~~LkpgG~l~~~~ 225 (289)
.....||-|++.. ... --.++....++||+||+++...
T Consensus 232 ~~~~~fDrVLvDVPCS~Dgt~rk~~~i~~~~w~~~~~~~L~~LQ~~iL~rgl~lLk~GG~lVYST 296 (375)
T KOG2198|consen 232 KEQLKFDRVLVDVPCSGDGTLRKNPNIWKEGWKTQRALGLHALQLRILRRGLRLLKVGGRLVYST 296 (375)
T ss_pred hhhhhcceeEEecccCCCcccccCchHhhhhhhhhhccCChHHHHHHHHHHHHHhcCCCEEEEec
Confidence 0124799999862 001 1367888999999999998643
No 258
>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A.
Probab=97.48 E-value=0.0004 Score=61.32 Aligned_cols=74 Identities=14% Similarity=0.085 Sum_probs=56.1
Q ss_pred CCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCcCCCCceEEEEc
Q 022962 121 SNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVAR 199 (289)
Q Consensus 121 ~~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~~~~~fD~V~sn 199 (289)
...+|+|||||-=-+++......++..++|+|++..++++.+.....++. +.++...|+..-.. ....|+.+.-
T Consensus 105 ~p~sVlDigCGlNPlalp~~~~~~~a~Y~a~DID~~~ve~l~~~l~~l~~-~~~~~v~Dl~~~~~----~~~~DlaLll 178 (251)
T PF07091_consen 105 PPDSVLDIGCGLNPLALPWMPEAPGATYIAYDIDSQLVEFLNAFLAVLGV-PHDARVRDLLSDPP----KEPADLALLL 178 (251)
T ss_dssp --SEEEEET-TTCHHHHHTTTSSTT-EEEEEESBHHHHHHHHHHHHHTT--CEEEEEE-TTTSHT----TSEESEEEEE
T ss_pred CCchhhhhhccCCceehhhcccCCCcEEEEEeCCHHHHHHHHHHHHhhCC-CcceeEeeeeccCC----CCCcchhhHH
Confidence 36799999999998888766566778999999999999999999999987 57777777765432 3678999876
No 259
>KOG1501 consensus Arginine N-methyltransferase [General function prediction only]
Probab=97.46 E-value=0.00032 Score=66.11 Aligned_cols=61 Identities=18% Similarity=0.278 Sum_probs=52.2
Q ss_pred CeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCC-CEEEEeccccccC
Q 022962 123 LKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLL-NVQIVRGRAETLG 184 (289)
Q Consensus 123 ~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~-ni~~~~~d~~~~~ 184 (289)
..|||||+|||.++++.+++. +-.|||+|.-.-|.+.|++...++|.+ +|.++...-.++.
T Consensus 68 v~vLdigtGTGLLSmMAvrag-aD~vtA~EvfkPM~d~arkI~~kng~SdkI~vInkrStev~ 129 (636)
T KOG1501|consen 68 VFVLDIGTGTGLLSMMAVRAG-ADSVTACEVFKPMVDLARKIMHKNGMSDKINVINKRSTEVK 129 (636)
T ss_pred EEEEEccCCccHHHHHHHHhc-CCeEEeehhhchHHHHHHHHHhcCCCccceeeeccccceee
Confidence 479999999999999888764 568999999999999999999999975 6988877666553
No 260
>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria. The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.
Probab=97.41 E-value=0.00024 Score=64.97 Aligned_cols=78 Identities=10% Similarity=-0.001 Sum_probs=55.6
Q ss_pred CCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCc---CCCCceEEE
Q 022962 121 SNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVS---FREQYDVAV 197 (289)
Q Consensus 121 ~~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~---~~~~fD~V~ 197 (289)
++..++|.=-|.|.-+..+....|.++|+|+|.++.+++.+++..... -+++.+++++..++..... .-.++|.|+
T Consensus 20 ~~g~~vD~T~G~GGHS~aiL~~~~~~~li~~DrD~~a~~~a~~~l~~~-~~r~~~~~~~F~~l~~~l~~~~~~~~~dgiL 98 (310)
T PF01795_consen 20 PGGIYVDCTFGGGGHSKAILEKLPNGRLIGIDRDPEALERAKERLKKF-DDRFIFIHGNFSNLDEYLKELNGINKVDGIL 98 (310)
T ss_dssp TT-EEEETT-TTSHHHHHHHHT-TT-EEEEEES-HHHHHHHHCCTCCC-CTTEEEEES-GGGHHHHHHHTTTTS-EEEEE
T ss_pred CCceEEeecCCcHHHHHHHHHhCCCCeEEEecCCHHHHHHHHHHHhhc-cceEEEEeccHHHHHHHHHHccCCCccCEEE
Confidence 477999999999999999998888899999999999999998765544 2479999998887632110 124788888
Q ss_pred Ec
Q 022962 198 AR 199 (289)
Q Consensus 198 sn 199 (289)
..
T Consensus 99 ~D 100 (310)
T PF01795_consen 99 FD 100 (310)
T ss_dssp EE
T ss_pred Ec
Confidence 75
No 261
>KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism]
Probab=97.38 E-value=0.003 Score=57.38 Aligned_cols=183 Identities=14% Similarity=0.179 Sum_probs=100.7
Q ss_pred CCCCHHHHHHHHHHHHHHH-HhhcCcCceeecChHHHHHhhhhhccccCCCCccccccccCCCCCCCCeEEEEcCCCChH
Q 022962 57 ETLNTRQQEQIHLYVDALL-QWNRKMNLTAVKDVNEVMERHIDDSLAIIPPIKNSYTSHCDSSCNSNLKLVDVGTGAGLP 135 (289)
Q Consensus 57 ~~~~~~~~~~l~~~~~~l~-~~n~~~~l~~~~~~~~~~~~~~~~sl~~~~~~~~~~~~~~~~~~~~~~~VLDiGcG~G~~ 135 (289)
..++.....+....+..+. +|... +..+.+..+ +.+++.+..+-|-.. .-....+||-=|||.|.+
T Consensus 98 ~~~n~~~m~kv~s~l~~i~RdwssE----~~~ERd~~y-kpii~~l~~lfp~~~--------~~r~ki~iLvPGaGlGRL 164 (369)
T KOG2798|consen 98 AQVNPDFMSKVSSTLKQICRDWSSE----GQRERDQLY-KPIIEELNSLFPSRG--------KERTKIRILVPGAGLGRL 164 (369)
T ss_pred ecCCHHHHHHHHHHHHHHHHHhhhc----cchhhhhhh-hhHHHHHHhhCCCcc--------ccccCceEEecCCCchhH
Confidence 3455566666655555555 45443 233333333 244444433322111 112356899999999999
Q ss_pred HHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCC-EE---------------------------------------E
Q 022962 136 GLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLN-VQ---------------------------------------I 175 (289)
Q Consensus 136 ~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~n-i~---------------------------------------~ 175 (289)
+..||...+ ++-|-|.|--|+-...-....-..+| +. +
T Consensus 165 a~dla~~G~--~~qGNEfSy~Mli~S~FiLN~~~~~nq~~IYPfIh~~sn~~~~dDQlrpi~~PD~~p~~~~~~~~~fsi 242 (369)
T KOG2798|consen 165 AYDLACLGF--KCQGNEFSYFMLICSSFILNYCKQENQFTIYPFIHQYSNSLSRDDQLRPISIPDIHPASSNGNTGSFSI 242 (369)
T ss_pred HHHHHHhcc--cccccHHHHHHHHHHHHHHHhhccCCcEEEEeeeeccccccccccccccccCccccccccCCCCCCccc
Confidence 999998744 55566888777654433322111111 11 1
Q ss_pred EeccccccCCCCcCCCCceEEEEcC----cccHHHHHHHHccccccCeEEEE-----EE-----cC----CcHHHHHHHH
Q 022962 176 VRGRAETLGKDVSFREQYDVAVARA----VAEMRILAEYCLPLVRVGGLFVA-----AK-----GH----DPQEEVKNSE 237 (289)
Q Consensus 176 ~~~d~~~~~~~~~~~~~fD~V~sn~----~~~~~~ll~~~~~~LkpgG~l~~-----~~-----g~----~~~~ei~~~~ 237 (289)
-.||..+.-......+.||+|+.+- -.++-+.++.+...|||||.++= ++ |. ...-..+++.
T Consensus 243 caGDF~evy~~s~~~~~~d~VvTcfFIDTa~NileYi~tI~~iLk~GGvWiNlGPLlYHF~d~~g~~~~~siEls~edl~ 322 (369)
T KOG2798|consen 243 CAGDFLEVYGTSSGAGSYDVVVTCFFIDTAHNILEYIDTIYKILKPGGVWINLGPLLYHFEDTHGVENEMSIELSLEDLK 322 (369)
T ss_pred cccceeEEecCcCCCCccceEEEEEEeechHHHHHHHHHHHHhccCCcEEEeccceeeeccCCCCCcccccccccHHHHH
Confidence 1122222211111124699998763 23677888899999999999872 11 10 0111234566
Q ss_pred HHHHHhCCeEeEEeeee
Q 022962 238 RAVQLMGASLLQLCSVE 254 (289)
Q Consensus 238 ~~l~~~g~~~~~~~~~~ 254 (289)
...+..||++.+...++
T Consensus 323 ~v~~~~GF~~~ke~~Id 339 (369)
T KOG2798|consen 323 RVASHRGFEVEKERGID 339 (369)
T ss_pred HHHHhcCcEEEEeeeee
Confidence 66778999988776554
No 262
>KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown]
Probab=97.29 E-value=0.00012 Score=62.62 Aligned_cols=117 Identities=21% Similarity=0.147 Sum_probs=80.5
Q ss_pred CCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCcCCCCceEEEEcC
Q 022962 121 SNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARA 200 (289)
Q Consensus 121 ~~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~~~~~fD~V~sn~ 200 (289)
.+.++||+|+|.|-++..++-.+ .+|+|.|.|..|...++.. +. || + +.++-... +-+||+|.|-.
T Consensus 112 ~~~~lLDlGAGdGeit~~m~p~f--eevyATElS~tMr~rL~kk----~y-nV--l-~~~ew~~t----~~k~dli~clN 177 (288)
T KOG3987|consen 112 EPVTLLDLGAGDGEITLRMAPTF--EEVYATELSWTMRDRLKKK----NY-NV--L-TEIEWLQT----DVKLDLILCLN 177 (288)
T ss_pred CCeeEEeccCCCcchhhhhcchH--HHHHHHHhhHHHHHHHhhc----CC-ce--e-eehhhhhc----CceeehHHHHH
Confidence 36799999999999988887543 3699999999998776652 22 22 1 11111111 24699999864
Q ss_pred cc----cHHHHHHHHcccccc-CeEEEEEE--------------------------cCCcHHHHHHHHHHHHHhCCeEeE
Q 022962 201 VA----EMRILAEYCLPLVRV-GGLFVAAK--------------------------GHDPQEEVKNSERAVQLMGASLLQ 249 (289)
Q Consensus 201 ~~----~~~~ll~~~~~~Lkp-gG~l~~~~--------------------------g~~~~~ei~~~~~~l~~~g~~~~~ 249 (289)
+- +.-.+++.+..+|.| +|+.++.. |....+++..+++.++..|+.+..
T Consensus 178 lLDRc~~p~kLL~Di~~vl~psngrvivaLVLP~~hYVE~N~~g~~~rPdn~Le~~Gr~~ee~v~~~~e~lr~~g~~vea 257 (288)
T KOG3987|consen 178 LLDRCFDPFKLLEDIHLVLAPSNGRVIVALVLPYMHYVETNTSGLPLRPDNLLENNGRSFEEEVARFMELLRNCGYRVEA 257 (288)
T ss_pred HHHhhcChHHHHHHHHHHhccCCCcEEEEEEecccceeecCCCCCcCCchHHHHhcCccHHHHHHHHHHHHHhcCchhhh
Confidence 32 456899999999999 88877421 223456677788889999997654
Q ss_pred Ee
Q 022962 250 LC 251 (289)
Q Consensus 250 ~~ 251 (289)
-.
T Consensus 258 wT 259 (288)
T KOG3987|consen 258 WT 259 (288)
T ss_pred hh
Confidence 43
No 263
>COG4798 Predicted methyltransferase [General function prediction only]
Probab=97.26 E-value=0.0048 Score=52.49 Aligned_cols=129 Identities=16% Similarity=0.195 Sum_probs=79.3
Q ss_pred CCCCCeEEEEcCCCChHHHHHHHHC-CCCEEEEEeCChHHHH------HHHHHHHHcCCCCEEEEeccccccCCCCcCCC
Q 022962 119 CNSNLKLVDVGTGAGLPGLVLAIAC-PDWKVTLLESMNKRCV------FLEHAVSLTQLLNVQIVRGRAETLGKDVSFRE 191 (289)
Q Consensus 119 ~~~~~~VLDiGcG~G~~~l~la~~~-p~~~V~~iD~s~~~l~------~a~~~~~~~~l~ni~~~~~d~~~~~~~~~~~~ 191 (289)
++++.+|+|+=-|.|.++..++... |.+.|++.=..+...- ..+...++-...|++.+-.++..+... +
T Consensus 46 lkpg~tVid~~PGgGy~TrI~s~~vgp~G~Vy~~~p~e~~~~~~~~~~r~~~~~~e~~~aN~e~~~~~~~A~~~p----q 121 (238)
T COG4798 46 LKPGATVIDLIPGGGYFTRIFSPAVGPKGKVYAYVPAELTKFAKREGPRLNAAAREPVYANVEVIGKPLVALGAP----Q 121 (238)
T ss_pred cCCCCEEEEEecCCccHhhhhchhcCCceeEEEecchhhcccccchhhhhhhhhhhhhhhhhhhhCCcccccCCC----C
Confidence 4568999999999999999998764 6778998876653111 111122223344666665555555422 3
Q ss_pred CceEEEEc-----------CcccHHHHHHHHccccccCeEEEEEE-----cCCcHHHH-------HHHHHHHHHhCCeEe
Q 022962 192 QYDVAVAR-----------AVAEMRILAEYCLPLVRVGGLFVAAK-----GHDPQEEV-------KNSERAVQLMGASLL 248 (289)
Q Consensus 192 ~fD~V~sn-----------~~~~~~~ll~~~~~~LkpgG~l~~~~-----g~~~~~ei-------~~~~~~l~~~g~~~~ 248 (289)
..|++..+ .-.....+..++++.|||||.+.++. |....+.. ....+.-+..||.+.
T Consensus 122 ~~d~~~~~~~yhdmh~k~i~~~~A~~vna~vf~~LKPGGv~~V~dH~a~pG~~~~dt~~~~ri~~a~V~a~veaaGFkl~ 201 (238)
T COG4798 122 KLDLVPTAQNYHDMHNKNIHPATAAKVNAAVFKALKPGGVYLVEDHRADPGSGLSDTITLHRIDPAVVIAEVEAAGFKLE 201 (238)
T ss_pred cccccccchhhhhhhccccCcchHHHHHHHHHHhcCCCcEEEEEeccccCCCChhhhhhhcccChHHHHHHHHhhcceee
Confidence 45555543 12345788889999999999999874 11111111 123344567899876
Q ss_pred EEe
Q 022962 249 QLC 251 (289)
Q Consensus 249 ~~~ 251 (289)
...
T Consensus 202 aeS 204 (238)
T COG4798 202 AES 204 (238)
T ss_pred eee
Confidence 543
No 264
>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]
Probab=97.26 E-value=0.0039 Score=56.45 Aligned_cols=78 Identities=14% Similarity=0.090 Sum_probs=60.6
Q ss_pred CCCeEEEEcCCCChHHHHHHHHCCC-CEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCC--cCCCCceEEE
Q 022962 121 SNLKLVDVGTGAGLPGLVLAIACPD-WKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDV--SFREQYDVAV 197 (289)
Q Consensus 121 ~~~~VLDiGcG~G~~~l~la~~~p~-~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~--~~~~~fD~V~ 197 (289)
+++..+|.=-|.|.-+-.+...+|. ++++|+|.++.+++.|++....++ +++++++++..++.... ..-+++|.|+
T Consensus 23 ~~giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai~~a~~~l~~~~-~r~~~v~~~F~~l~~~l~~~~i~~vDGiL 101 (314)
T COG0275 23 PDGIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAIAIAKERLKEFD-GRVTLVHGNFANLAEALKELGIGKVDGIL 101 (314)
T ss_pred CCcEEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCHHHHHHHHHHhhccC-CcEEEEeCcHHHHHHHHHhcCCCceeEEE
Confidence 3679999999999999998888764 679999999999999999888776 47999999877653211 0124677776
Q ss_pred Ec
Q 022962 198 AR 199 (289)
Q Consensus 198 sn 199 (289)
..
T Consensus 102 ~D 103 (314)
T COG0275 102 LD 103 (314)
T ss_pred Ee
Confidence 64
No 265
>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology. Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.
Probab=97.23 E-value=0.01 Score=53.59 Aligned_cols=116 Identities=16% Similarity=0.129 Sum_probs=73.8
Q ss_pred eEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCcCCCCceEEEEcC---
Q 022962 124 KLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARA--- 200 (289)
Q Consensus 124 ~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~~~~~fD~V~sn~--- 200 (289)
+++|+.||.|.+++.+... ....|.++|+++.+++..+.|... . ++++|+.++.... ....+|+++...
T Consensus 2 ~v~dLFsG~Gg~~~gl~~~-G~~~v~a~e~~~~a~~~~~~N~~~-----~-~~~~Di~~~~~~~-~~~~~D~l~~gpPCq 73 (275)
T cd00315 2 RVIDLFAGIGGFRLGLEKA-GFEIVAANEIDKSAAETYEANFPN-----K-LIEGDITKIDEKD-FIPDIDLLTGGFPCQ 73 (275)
T ss_pred cEEEEccCcchHHHHHHHc-CCEEEEEEeCCHHHHHHHHHhCCC-----C-CccCccccCchhh-cCCCCCEEEeCCCCh
Confidence 6899999999988777654 234578999999999888876532 1 5677888775421 125699999862
Q ss_pred ----------ccc-----HHHHHHHHccccccCeEEEEEE--c---CCcHHHHHHHHHHHHHhCCeEeE
Q 022962 201 ----------VAE-----MRILAEYCLPLVRVGGLFVAAK--G---HDPQEEVKNSERAVQLMGASLLQ 249 (289)
Q Consensus 201 ----------~~~-----~~~ll~~~~~~LkpgG~l~~~~--g---~~~~~ei~~~~~~l~~~g~~~~~ 249 (289)
..+ +..+++.+ +.++|. .++++- | .+..+.+..+.+.++..|+.+..
T Consensus 74 ~fS~ag~~~~~~d~r~~L~~~~~~~i-~~~~P~-~~v~ENV~g~~~~~~~~~~~~i~~~l~~~GY~~~~ 140 (275)
T cd00315 74 PFSIAGKRKGFEDTRGTLFFEIIRIL-KEKKPK-YFLLENVKGLLTHDNGNTLKVILNTLEELGYNVYW 140 (275)
T ss_pred hhhHHhhcCCCCCchHHHHHHHHHHH-HhcCCC-EEEEEcCcchhccCchHHHHHHHHHHHhCCcEEEE
Confidence 111 12333322 234565 444442 1 11234567777888899987643
No 266
>KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification]
Probab=97.16 E-value=0.0072 Score=53.03 Aligned_cols=145 Identities=19% Similarity=0.128 Sum_probs=88.1
Q ss_pred CCCCCeEEEEcCCCChHHHHHHHH-CCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCcCCCCceEEE
Q 022962 119 CNSNLKLVDVGTGAGLPGLVLAIA-CPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAV 197 (289)
Q Consensus 119 ~~~~~~VLDiGcG~G~~~l~la~~-~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~~~~~fD~V~ 197 (289)
++++.+||=+|+++|.---..+.. -|+.-|+|||.|...=..+-..+++ -+||-.+..|+.......-.-...|+|+
T Consensus 154 ikpGsKVLYLGAasGttVSHvSDiVGpeG~VYAVEfs~rsGRdL~nmAkk--RtNiiPIiEDArhP~KYRmlVgmVDvIF 231 (317)
T KOG1596|consen 154 IKPGSKVLYLGAASGTTVSHVSDIVGPEGCVYAVEFSHRSGRDLINMAKK--RTNIIPIIEDARHPAKYRMLVGMVDVIF 231 (317)
T ss_pred ecCCceEEEeeccCCceeehhhcccCCCceEEEEEecccchHHHHHHhhc--cCCceeeeccCCCchheeeeeeeEEEEe
Confidence 457999999999999854444433 3788999999998654333333332 2478777777765322111124689998
Q ss_pred Ec-Cccc-HHHHHHHHccccccCeEEEEEEcCC------cHHH-HHHHHHHHHHhCCeEeEEeeeecCCCCCceEEEEEE
Q 022962 198 AR-AVAE-MRILAEYCLPLVRVGGLFVAAKGHD------PQEE-VKNSERAVQLMGASLLQLCSVESQSPFGQRTAVVCL 268 (289)
Q Consensus 198 sn-~~~~-~~~ll~~~~~~LkpgG~l~~~~g~~------~~~e-i~~~~~~l~~~g~~~~~~~~~~~~~~~~~r~lv~~~ 268 (289)
+. +..+ .+.+.-.+..+||+||.|++..-.+ ..+. +..-.+.|++..++..+..-+ .|+...+.+++.
T Consensus 232 aDvaqpdq~RivaLNA~~FLk~gGhfvisikancidstv~ae~vFa~Ev~klqee~lkP~EqvtL---EP~erdha~VvG 308 (317)
T KOG1596|consen 232 ADVAQPDQARIVALNAQYFLKNGGHFVISIKANCIDSTVFAEAVFAAEVKKLQEEQLKPKEQVTL---EPFERDHACVVG 308 (317)
T ss_pred ccCCCchhhhhhhhhhhhhhccCCeEEEEEecccccccccHHHHHHHHHHHHHHhccCchheecc---ccccCCceEEEE
Confidence 87 3333 3455557788999999999764211 1121 222234466677777776544 244444444443
No 267
>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]
Probab=97.12 E-value=0.0022 Score=59.14 Aligned_cols=93 Identities=16% Similarity=0.089 Sum_probs=69.5
Q ss_pred CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCcCCCCceEEEEcC-
Q 022962 122 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARA- 200 (289)
Q Consensus 122 ~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~~~~~fD~V~sn~- 200 (289)
-...+|+|.|.|..+-.+...+|. |-+++.+...+..+..... . .|+.+.+|..+- . -+-|+|++.-
T Consensus 178 v~~avDvGgGiG~v~k~ll~~fp~--ik~infdlp~v~~~a~~~~-~---gV~~v~gdmfq~-~-----P~~daI~mkWi 245 (342)
T KOG3178|consen 178 VNVAVDVGGGIGRVLKNLLSKYPH--IKGINFDLPFVLAAAPYLA-P---GVEHVAGDMFQD-T-----PKGDAIWMKWI 245 (342)
T ss_pred CceEEEcCCcHhHHHHHHHHhCCC--CceeecCHHHHHhhhhhhc-C---Ccceeccccccc-C-----CCcCeEEEEee
Confidence 478999999999999888878775 7777877766655555443 3 477777777653 1 1347888762
Q ss_pred -----cccHHHHHHHHccccccCeEEEEEEc
Q 022962 201 -----VAEMRILAEYCLPLVRVGGLFVAAKG 226 (289)
Q Consensus 201 -----~~~~~~ll~~~~~~LkpgG~l~~~~g 226 (289)
-.+...+++.|+..|+|||.+++...
T Consensus 246 LhdwtDedcvkiLknC~~sL~~~GkIiv~E~ 276 (342)
T KOG3178|consen 246 LHDWTDEDCVKILKNCKKSLPPGGKIIVVEN 276 (342)
T ss_pred cccCChHHHHHHHHHHHHhCCCCCEEEEEec
Confidence 34678999999999999999997653
No 268
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=97.10 E-value=0.0027 Score=58.73 Aligned_cols=94 Identities=17% Similarity=0.187 Sum_probs=65.2
Q ss_pred CCCCCCeEEEEcCC-CChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEecc-ccccCCCCcCCCCceE
Q 022962 118 SCNSNLKLVDVGTG-AGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGR-AETLGKDVSFREQYDV 195 (289)
Q Consensus 118 ~~~~~~~VLDiGcG-~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d-~~~~~~~~~~~~~fD~ 195 (289)
+.+++.+|+=+|+| -|..++.+|+... ++|+++|.|++..+.|++ +|.+ .++.+. ...... ..+.||+
T Consensus 163 ~~~pG~~V~I~G~GGlGh~avQ~Aka~g-a~Via~~~~~~K~e~a~~----lGAd--~~i~~~~~~~~~~---~~~~~d~ 232 (339)
T COG1064 163 NVKPGKWVAVVGAGGLGHMAVQYAKAMG-AEVIAITRSEEKLELAKK----LGAD--HVINSSDSDALEA---VKEIADA 232 (339)
T ss_pred CCCCCCEEEEECCcHHHHHHHHHHHHcC-CeEEEEeCChHHHHHHHH----hCCc--EEEEcCCchhhHH---hHhhCcE
Confidence 46678999999888 3446666777654 999999999999887766 4543 233322 222221 1235999
Q ss_pred EEEcCcccHHHHHHHHccccccCeEEEEE
Q 022962 196 AVARAVAEMRILAEYCLPLVRVGGLFVAA 224 (289)
Q Consensus 196 V~sn~~~~~~~ll~~~~~~LkpgG~l~~~ 224 (289)
|+.... ...+....+.|++||++++.
T Consensus 233 ii~tv~---~~~~~~~l~~l~~~G~~v~v 258 (339)
T COG1064 233 IIDTVG---PATLEPSLKALRRGGTLVLV 258 (339)
T ss_pred EEECCC---hhhHHHHHHHHhcCCEEEEE
Confidence 998765 45666777899999999864
No 269
>KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification]
Probab=97.08 E-value=0.014 Score=51.82 Aligned_cols=102 Identities=17% Similarity=0.120 Sum_probs=64.1
Q ss_pred CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcC-----CC-CEEEEeccccccCCCCcCCCC-ce
Q 022962 122 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQ-----LL-NVQIVRGRAETLGKDVSFREQ-YD 194 (289)
Q Consensus 122 ~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~-----l~-ni~~~~~d~~~~~~~~~~~~~-fD 194 (289)
..+||++|+|+|..|+..|.. ..++|+.-|.-. .+...+.+...++ .. .+.+..-++.+.......... ||
T Consensus 87 ~~~vlELGsGtglvG~~aa~~-~~~~v~ltD~~~-~~~~L~~~~~~~~~~l~~~g~~v~v~~L~Wg~~~~~~~~~~~~~D 164 (248)
T KOG2793|consen 87 YINVLELGSGTGLVGILAALL-LGAEVVLTDLPK-VVENLKFNRDKNNIALNQLGGSVIVAILVWGNALDVSFRLPNPFD 164 (248)
T ss_pred ceeEEEecCCccHHHHHHHHH-hcceeccCCchh-hHHHHHHhhhhhhhhhhhcCCceeEEEEecCCcccHhhccCCccc
Confidence 567999999999999888865 467999988744 4444444433322 11 344444444443221111234 89
Q ss_pred EEEEcC----cccHHHHHHHHccccccCeEEEEEE
Q 022962 195 VAVARA----VAEMRILAEYCLPLVRVGGLFVAAK 225 (289)
Q Consensus 195 ~V~sn~----~~~~~~ll~~~~~~LkpgG~l~~~~ 225 (289)
+|++.. ....+.++..+..+|..+|.+++..
T Consensus 165 lilasDvvy~~~~~e~Lv~tla~ll~~~~~i~l~~ 199 (248)
T KOG2793|consen 165 LILASDVVYEEESFEGLVKTLAFLLAKDGTIFLAY 199 (248)
T ss_pred EEEEeeeeecCCcchhHHHHHHHHHhcCCeEEEEE
Confidence 999873 2345677777777888888655544
No 270
>KOG1253 consensus tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=97.05 E-value=0.00033 Score=66.91 Aligned_cols=105 Identities=18% Similarity=0.228 Sum_probs=89.2
Q ss_pred CCCCeEEEEcCCCChHHHHHHHHCCC-CEEEEEeCChHHHHHHHHHHHHcCCCC-EEEEeccccccCCCC-cCCCCceEE
Q 022962 120 NSNLKLVDVGTGAGLPGLVLAIACPD-WKVTLLESMNKRCVFLEHAVSLTQLLN-VQIVRGRAETLGKDV-SFREQYDVA 196 (289)
Q Consensus 120 ~~~~~VLDiGcG~G~~~l~la~~~p~-~~V~~iD~s~~~l~~a~~~~~~~~l~n-i~~~~~d~~~~~~~~-~~~~~fD~V 196 (289)
.++.+|||.=|+||.=++..|+..|+ .+|++-|.++.+++..++|++.++.++ ++..++|+..+-... .....||+|
T Consensus 108 ~~~l~vLealsAtGlrslRya~El~~v~~v~AnD~~~~aV~~i~~Nv~~N~v~~ive~~~~DA~~lM~~~~~~~~~FDvI 187 (525)
T KOG1253|consen 108 EKSLRVLEALSATGLRSLRYAKELPGVRQVVANDLNENAVTSIQRNVELNGVEDIVEPHHSDANVLMYEHPMVAKFFDVI 187 (525)
T ss_pred cCcchHHHHhhhhhHHHHHHHHHhcchhhhcccCCCHHHHHHHHhhhhhcCchhhcccccchHHHHHHhccccccccceE
Confidence 35779999999999999999999887 589999999999999999999998765 778888887642210 113679999
Q ss_pred EEcCcccHHHHHHHHccccccCeEEEEE
Q 022962 197 VARAVAEMRILAEYCLPLVRVGGLFVAA 224 (289)
Q Consensus 197 ~sn~~~~~~~ll~~~~~~LkpgG~l~~~ 224 (289)
=.........+|..+.+.++.||.+++-
T Consensus 188 DLDPyGs~s~FLDsAvqav~~gGLL~vT 215 (525)
T KOG1253|consen 188 DLDPYGSPSPFLDSAVQAVRDGGLLCVT 215 (525)
T ss_pred ecCCCCCccHHHHHHHHHhhcCCEEEEE
Confidence 9998888899999999999999999864
No 271
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=96.99 E-value=0.0023 Score=61.52 Aligned_cols=130 Identities=17% Similarity=0.248 Sum_probs=74.3
Q ss_pred CeEEEEcCCCChHHHHHHHHCCCC--EEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccc-cCCCCcCCCCceEEEEc
Q 022962 123 LKLVDVGTGAGLPGLVLAIACPDW--KVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAET-LGKDVSFREQYDVAVAR 199 (289)
Q Consensus 123 ~~VLDiGcG~G~~~l~la~~~p~~--~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~-~~~~~~~~~~fD~V~sn 199 (289)
..|+|+.+|.|.++-+|.. .|-+ .|+-++ .+..+.. +-.-|+ |-+++ |+.+ ++ .++.+||+|.++
T Consensus 367 RNVMDMnAg~GGFAAAL~~-~~VWVMNVVP~~-~~ntL~v----IydRGL--IG~yh-DWCE~fs---TYPRTYDLlHA~ 434 (506)
T PF03141_consen 367 RNVMDMNAGYGGFAAALID-DPVWVMNVVPVS-GPNTLPV----IYDRGL--IGVYH-DWCEAFS---TYPRTYDLLHAD 434 (506)
T ss_pred eeeeeecccccHHHHHhcc-CCceEEEecccC-CCCcchh----hhhccc--chhcc-chhhccC---CCCcchhheehh
Confidence 4799999999998777753 2322 222221 1111111 111232 22222 4433 22 467899999998
Q ss_pred Cc-------ccHHHHHHHHccccccCeEEEEEEcCCcHHHHHHHHHHHHHhCCeEeEEeeeecCCCCCceEEEEEEe
Q 022962 200 AV-------AEMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLLQLCSVESQSPFGQRTAVVCLK 269 (289)
Q Consensus 200 ~~-------~~~~~ll~~~~~~LkpgG~l~~~~g~~~~~ei~~~~~~l~~~g~~~~~~~~~~~~~~~~~r~lv~~~k 269 (289)
.+ .++..++-++-|+|+|||.+++-...+...+ +.+.++...++.. +... ...+.+...+++++|
T Consensus 435 ~lfs~~~~rC~~~~illEmDRILRP~G~~iiRD~~~vl~~---v~~i~~~lrW~~~-~~d~-e~g~~~~EkiL~~~K 506 (506)
T PF03141_consen 435 GLFSLYKDRCEMEDILLEMDRILRPGGWVIIRDTVDVLEK---VKKIAKSLRWEVR-IHDT-EDGPDGPEKILICQK 506 (506)
T ss_pred hhhhhhcccccHHHHHHHhHhhcCCCceEEEeccHHHHHH---HHHHHHhCcceEE-EEec-CCCCCCCceEEEEEC
Confidence 42 3678999999999999999998544434444 4445556666543 2211 123344555666554
No 272
>COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms]
Probab=96.99 E-value=0.019 Score=56.20 Aligned_cols=105 Identities=14% Similarity=0.065 Sum_probs=75.3
Q ss_pred CCCeEEEEcCCCChHHHHHHHHCC----CCEEEEEeCChHHHHHHHHHHHHcCCC-CEEEEeccccccCCCC--cCCCCc
Q 022962 121 SNLKLVDVGTGAGLPGLVLAIACP----DWKVTLLESMNKRCVFLEHAVSLTQLL-NVQIVRGRAETLGKDV--SFREQY 193 (289)
Q Consensus 121 ~~~~VLDiGcG~G~~~l~la~~~p----~~~V~~iD~s~~~l~~a~~~~~~~~l~-ni~~~~~d~~~~~~~~--~~~~~f 193 (289)
+..+|.|-.||||..-+..+.... ...++|.|+++.....|+.|.--.|++ ++...++|-..-+... ...+.|
T Consensus 186 ~~~~i~DpacGsgg~l~~a~~~~~~~~~~~~~yGqE~~~~t~~l~~mN~~lhgi~~~~~i~~~dtl~~~~~~~~~~~~~~ 265 (489)
T COG0286 186 PRNSIYDPACGSGGMLLQAAKYLKRHQDEIFIYGQEINDTTYRLAKMNLILHGIEGDANIRHGDTLSNPKHDDKDDKGKF 265 (489)
T ss_pred CCCeecCCCCchhHHHHHHHHHHHhhccceeEEEEeCCHHHHHHHHHHHHHhCCCccccccccccccCCcccccCCccce
Confidence 456999999999987766655432 377999999999999999998888876 3555555544432211 123679
Q ss_pred eEEEEcC---------c--------------------ccHHHHHHHHccccccCeEEEEEE
Q 022962 194 DVAVARA---------V--------------------AEMRILAEYCLPLVRVGGLFVAAK 225 (289)
Q Consensus 194 D~V~sn~---------~--------------------~~~~~ll~~~~~~LkpgG~l~~~~ 225 (289)
|+|++|. . .....+++.+...|+|||+..++.
T Consensus 266 D~viaNPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~~h~~~~l~~~g~aaivl 326 (489)
T COG0286 266 DFVIANPPFSGKGWGGDLLESEQDERFFFYGVFPTKNSADLAFLQHILYKLKPGGRAAIVL 326 (489)
T ss_pred eEEEeCCCCCccccccccccccccccccccCCCCCCCchHHHHHHHHHHhcCCCceEEEEe
Confidence 9999992 0 012678889999999988666554
No 273
>PHA01634 hypothetical protein
Probab=96.98 E-value=0.0044 Score=49.15 Aligned_cols=71 Identities=17% Similarity=0.170 Sum_probs=53.0
Q ss_pred CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCcCCCCceEEEEc
Q 022962 122 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVAR 199 (289)
Q Consensus 122 ~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~~~~~fD~V~sn 199 (289)
+.+|+|||.+.|..++.++.. .+.+|+++|++++.....+++++.+.+-+=-+...++.. . -++||+.+..
T Consensus 29 ~KtV~dIGA~iGdSaiYF~l~-GAK~Vva~E~~~kl~k~~een~k~nnI~DK~v~~~eW~~---~---Y~~~Di~~iD 99 (156)
T PHA01634 29 QRTIQIVGADCGSSALYFLLR-GASFVVQYEKEEKLRKKWEEVCAYFNICDKAVMKGEWNG---E---YEDVDIFVMD 99 (156)
T ss_pred CCEEEEecCCccchhhHHhhc-CccEEEEeccCHHHHHHHHHHhhhheeeeceeecccccc---c---CCCcceEEEE
Confidence 789999999999999998865 567999999999999999998887644211122223322 1 2679988876
No 274
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=96.79 E-value=0.011 Score=59.97 Aligned_cols=135 Identities=17% Similarity=0.112 Sum_probs=85.9
Q ss_pred CCeEEEEcCCCChHHHHHHHHC-------C-----CCEEEEEeCCh---HHHHHH-----------HHHHHH-----cCC
Q 022962 122 NLKLVDVGTGAGLPGLVLAIAC-------P-----DWKVTLLESMN---KRCVFL-----------EHAVSL-----TQL 170 (289)
Q Consensus 122 ~~~VLDiGcG~G~~~l~la~~~-------p-----~~~V~~iD~s~---~~l~~a-----------~~~~~~-----~~l 170 (289)
.-+|+|+|-|+|...+...+.. | ..+++++|..+ +.+..+ ++..+. .|+
T Consensus 58 ~~~i~e~gfG~G~N~l~~~~~~~~~~~~~~~~~~~~l~~~s~E~~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~ 137 (662)
T PRK01747 58 RFVIAETGFGTGLNFLATWQAFDQFRQRHPPARLKRLHFISFEKFPLTRADLARAHQHWPELAPLAEQLQAQWPLLLPGC 137 (662)
T ss_pred cEEEEecCcchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEEECCCCCHHHHHHHHhhCcccHHHHHHHHHhCCccCCCc
Confidence 3689999999999877766433 3 35899999754 222221 111111 122
Q ss_pred -------C--CEEEEeccccccCCCCcCCCCceEEEEcCccc-------HHHHHHHHccccccCeEEEEEEcCCcHHHHH
Q 022962 171 -------L--NVQIVRGRAETLGKDVSFREQYDVAVARAVAE-------MRILAEYCLPLVRVGGLFVAAKGHDPQEEVK 234 (289)
Q Consensus 171 -------~--ni~~~~~d~~~~~~~~~~~~~fD~V~sn~~~~-------~~~ll~~~~~~LkpgG~l~~~~g~~~~~ei~ 234 (289)
. +++++.+|+.+.-.. ....||+++..++++ -.++++.+.++++|||+|.-+.. . .
T Consensus 138 ~~~~~~~~~~~l~l~~gd~~~~~~~--~~~~~d~~~lD~FsP~~np~~W~~~~~~~l~~~~~~~~~~~t~t~---a---~ 209 (662)
T PRK01747 138 HRLLFDDGRVTLDLWFGDANELLPQ--LDARADAWFLDGFAPAKNPDMWSPNLFNALARLARPGATLATFTS---A---G 209 (662)
T ss_pred eEEEecCCcEEEEEEecCHHHHHHh--ccccccEEEeCCCCCccChhhccHHHHHHHHHHhCCCCEEEEeeh---H---H
Confidence 1 255677888764332 225699999987553 27899999999999999986542 2 2
Q ss_pred HHHHHHHHhCCeEeEEeeeecCCCCCceEEEEEEe
Q 022962 235 NSERAVQLMGASLLQLCSVESQSPFGQRTAVVCLK 269 (289)
Q Consensus 235 ~~~~~l~~~g~~~~~~~~~~~~~~~~~r~lv~~~k 269 (289)
.+.+.|..+||++... +...+.|...+...
T Consensus 210 ~vr~~l~~~GF~v~~~-----~~~g~kr~~~~~~~ 239 (662)
T PRK01747 210 FVRRGLQEAGFTVRKV-----KGFGRKREMLVGEL 239 (662)
T ss_pred HHHHHHHHcCCeeeec-----CCCchhhhhhhehh
Confidence 3445777999987644 33445555555444
No 275
>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins.; PDB: 3GIW_A 3GO4_A 2QE6_A.
Probab=96.79 E-value=0.029 Score=50.23 Aligned_cols=122 Identities=11% Similarity=0.082 Sum_probs=69.7
Q ss_pred CeEEEEcCCCCh--HHHHHHHH-CCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCC---------CCcCC
Q 022962 123 LKLVDVGTGAGL--PGLVLAIA-CPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGK---------DVSFR 190 (289)
Q Consensus 123 ~~VLDiGcG~G~--~~l~la~~-~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~---------~~~~~ 190 (289)
...||||||-=. ..=.+|+. .|+++|+=||.++-.++.++.......-....++++|+.+... ..+++
T Consensus 70 rQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~~~~~g~t~~v~aD~r~p~~iL~~p~~~~~lD~~ 149 (267)
T PF04672_consen 70 RQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALLADNPRGRTAYVQADLRDPEAILAHPEVRGLLDFD 149 (267)
T ss_dssp -EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHTT-TTSEEEEEE--TT-HHHHHCSHHHHCC--TT
T ss_pred ceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhhcCCCCccEEEEeCCCCCHHHHhcCHHHHhcCCCC
Confidence 479999999432 22334543 6999999999999999988887665542238999999987421 11233
Q ss_pred CCceEEEEcC------cccHHHHHHHHccccccCeEEEEEEcC--CcHHHHHHHHHHHHHhC
Q 022962 191 EQYDVAVARA------VAEMRILAEYCLPLVRVGGLFVAAKGH--DPQEEVKNSERAVQLMG 244 (289)
Q Consensus 191 ~~fD~V~sn~------~~~~~~ll~~~~~~LkpgG~l~~~~g~--~~~~ei~~~~~~l~~~g 244 (289)
++.=+++..- -.+...++......|.||.+|++.+.. ...+....+...+...+
T Consensus 150 rPVavll~~vLh~v~D~~dp~~iv~~l~d~lapGS~L~ish~t~d~~p~~~~~~~~~~~~~~ 211 (267)
T PF04672_consen 150 RPVAVLLVAVLHFVPDDDDPAGIVARLRDALAPGSYLAISHATDDGAPERAEALEAVYAQAG 211 (267)
T ss_dssp S--EEEECT-GGGS-CGCTHHHHHHHHHCCS-TT-EEEEEEEB-TTSHHHHHHHHHHHHHCC
T ss_pred CCeeeeeeeeeccCCCccCHHHHHHHHHHhCCCCceEEEEecCCCCCHHHHHHHHHHHHcCC
Confidence 4554544431 246889999999999999999987742 22333344444444443
No 276
>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=96.79 E-value=0.0037 Score=57.64 Aligned_cols=119 Identities=17% Similarity=0.167 Sum_probs=70.5
Q ss_pred CCeEEEEcCCCChHHHHHHHHCCC-CEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccc----cccCCCCcCCCCceEE
Q 022962 122 NLKLVDVGTGAGLPGLVLAIACPD-WKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRA----ETLGKDVSFREQYDVA 196 (289)
Q Consensus 122 ~~~VLDiGcG~G~~~l~la~~~p~-~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~----~~~~~~~~~~~~fD~V 196 (289)
.++|||+|.|.|.-..++-..+|. -.++.++.|+..-++....++....+....-.+|+ .+++. ...|++|
T Consensus 114 pqsiLDvG~GPgtgl~A~n~i~Pdl~sa~ile~sp~lrkV~~tl~~nv~t~~td~r~s~vt~dRl~lp~----ad~ytl~ 189 (484)
T COG5459 114 PQSILDVGAGPGTGLWALNDIWPDLKSAVILEASPALRKVGDTLAENVSTEKTDWRASDVTEDRLSLPA----ADLYTLA 189 (484)
T ss_pred cchhhccCCCCchhhhhhcccCCCchhhhhhccCHHHHHHHHHHHhhcccccCCCCCCccchhccCCCc----cceeehh
Confidence 568999999999865555555676 36788888876544444443333322222222222 22322 3568888
Q ss_pred EEc-C------cccHHHHHHHHccccccCeEEEEEEcCC--cHHHHHHHHHHHHHhC
Q 022962 197 VAR-A------VAEMRILAEYCLPLVRVGGLFVAAKGHD--PQEEVKNSERAVQLMG 244 (289)
Q Consensus 197 ~sn-~------~~~~~~ll~~~~~~LkpgG~l~~~~g~~--~~~ei~~~~~~l~~~g 244 (289)
+.. . -.++...++....++.|||.|+++.... .-+.|..+.+.+-..|
T Consensus 190 i~~~eLl~d~~ek~i~~~ie~lw~l~~~gg~lVivErGtp~Gf~~I~rAR~~ll~~~ 246 (484)
T COG5459 190 IVLDELLPDGNEKPIQVNIERLWNLLAPGGHLVIVERGTPAGFERILRARQILLAPG 246 (484)
T ss_pred hhhhhhccccCcchHHHHHHHHHHhccCCCeEEEEeCCCchhHHHHHHHHHHHhcCC
Confidence 754 2 2245668888899999999999876432 2344444444443334
No 277
>COG3129 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=96.61 E-value=0.0036 Score=54.58 Aligned_cols=80 Identities=16% Similarity=0.301 Sum_probs=56.1
Q ss_pred CCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHc-CCCC-EEEEec-cccccCCC-CcCCCCceEE
Q 022962 121 SNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLT-QLLN-VQIVRG-RAETLGKD-VSFREQYDVA 196 (289)
Q Consensus 121 ~~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~-~l~n-i~~~~~-d~~~~~~~-~~~~~~fD~V 196 (289)
++.++||||+|.-++=-.+-..-=+++.+|.|+|+..++.|+.++..+ ++++ |+.... |-..+-.. ....+.||++
T Consensus 78 ~~i~~LDIGvGAnCIYPliG~~eYgwrfvGseid~~sl~sA~~ii~~N~~l~~~I~lr~qk~~~~if~giig~nE~yd~t 157 (292)
T COG3129 78 KNIRILDIGVGANCIYPLIGVHEYGWRFVGSEIDSQSLSSAKAIISANPGLERAIRLRRQKDSDAIFNGIIGKNERYDAT 157 (292)
T ss_pred CceEEEeeccCcccccccccceeecceeecCccCHHHHHHHHHHHHcCcchhhheeEEeccCccccccccccccceeeeE
Confidence 567999999999886433332222689999999999999999998887 6654 766543 33322111 1124789999
Q ss_pred EEcC
Q 022962 197 VARA 200 (289)
Q Consensus 197 ~sn~ 200 (289)
+||.
T Consensus 158 lCNP 161 (292)
T COG3129 158 LCNP 161 (292)
T ss_pred ecCC
Confidence 9993
No 278
>PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known.
Probab=96.56 E-value=0.014 Score=48.69 Aligned_cols=127 Identities=18% Similarity=0.126 Sum_probs=77.9
Q ss_pred EcCCCChHHHHHHHHCC-CCEEEEE--eCChHHHHHH---HHHHHHcCCCCEEEEe-ccccccCCCCc-CCCCceEEEEc
Q 022962 128 VGTGAGLPGLVLAIACP-DWKVTLL--ESMNKRCVFL---EHAVSLTQLLNVQIVR-GRAETLGKDVS-FREQYDVAVAR 199 (289)
Q Consensus 128 iGcG~G~~~l~la~~~p-~~~V~~i--D~s~~~l~~a---~~~~~~~~l~ni~~~~-~d~~~~~~~~~-~~~~fD~V~sn 199 (289)
||=|.=..++.||+.++ ...++|. |..++..+.. ..+++.+.-.++++++ .|+..+..... ..+.||.|+.|
T Consensus 3 vGeGdfSFs~sL~~~~~~~~~l~ATs~ds~~~l~~kY~~~~~nl~~L~~~g~~V~~~VDat~l~~~~~~~~~~FDrIiFN 82 (166)
T PF10354_consen 3 VGEGDFSFSLSLARAFGSATNLVATSYDSEEELLQKYPDAEENLEELRELGVTVLHGVDATKLHKHFRLKNQRFDRIIFN 82 (166)
T ss_pred eeccchHHHHHHHHHcCCCCeEEEeecCchHHHHHhcccHHHHHHHHhhcCCccccCCCCCcccccccccCCcCCEEEEe
Confidence 45566666777777766 5566554 5444444333 3566666444565554 47777654321 24689999999
Q ss_pred C--c---------------ccHHHHHHHHccccccCeEEEEEEcCCcHHHHHHHHHHHHHhCCeEeEEeeee
Q 022962 200 A--V---------------AEMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLLQLCSVE 254 (289)
Q Consensus 200 ~--~---------------~~~~~ll~~~~~~LkpgG~l~~~~g~~~~~ei~~~~~~l~~~g~~~~~~~~~~ 254 (289)
- . .=+..+++.+.++|+++|.+.+..-..+.-..=.+.+..+..|+.+.+..+++
T Consensus 83 FPH~G~~~~~~~~~i~~nr~Ll~~Ff~Sa~~~L~~~G~IhVTl~~~~py~~W~i~~lA~~~gl~l~~~~~F~ 154 (166)
T PF10354_consen 83 FPHVGGGSEDGKRNIRLNRELLRGFFKSASQLLKPDGEIHVTLKDGQPYDSWNIEELAAEAGLVLVRKVPFD 154 (166)
T ss_pred CCCCCCCccchhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCCCCccccHHHHHHhcCCEEEEEecCC
Confidence 1 0 12478889999999999999986533322111112234457899888876653
No 279
>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T
Probab=96.33 E-value=0.014 Score=54.98 Aligned_cols=101 Identities=14% Similarity=0.079 Sum_probs=64.9
Q ss_pred CCCCeEEEEcCCC-ChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEecc-ccc-cCCCCcCCCCceEE
Q 022962 120 NSNLKLVDVGTGA-GLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGR-AET-LGKDVSFREQYDVA 196 (289)
Q Consensus 120 ~~~~~VLDiGcG~-G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d-~~~-~~~~~~~~~~fD~V 196 (289)
.++.+||.+|||+ |..++.+|+..+..+|+++|.++++.+.+++.. +...+.....+ ..+ +.. ......+|+|
T Consensus 183 ~~g~~VlV~g~G~vG~~~~~la~~~g~~~vi~~~~~~~~~~~~~~~~---~~~vi~~~~~~~~~~~l~~-~~~~~~~D~v 258 (386)
T cd08283 183 KPGDTVAVWGCGPVGLFAARSAKLLGAERVIAIDRVPERLEMARSHL---GAETINFEEVDDVVEALRE-LTGGRGPDVC 258 (386)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcC---CcEEEcCCcchHHHHHHHH-HcCCCCCCEE
Confidence 3578999999988 888888888876557999999999888777631 22112111111 111 100 0112368998
Q ss_pred EEcCc-------------------ccHHHHHHHHccccccCeEEEEE
Q 022962 197 VARAV-------------------AEMRILAEYCLPLVRVGGLFVAA 224 (289)
Q Consensus 197 ~sn~~-------------------~~~~~ll~~~~~~LkpgG~l~~~ 224 (289)
+-..- .+....+.++.+.|+++|+++..
T Consensus 259 ld~vg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~iv~~ 305 (386)
T cd08283 259 IDAVGMEAHGSPLHKAEQALLKLETDRPDALREAIQAVRKGGTVSII 305 (386)
T ss_pred EECCCCcccccccccccccccccccCchHHHHHHHHHhccCCEEEEE
Confidence 86421 11245778888999999999875
No 280
>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []. Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.
Probab=96.28 E-value=0.015 Score=50.14 Aligned_cols=102 Identities=12% Similarity=0.067 Sum_probs=57.4
Q ss_pred CCeEEEEcCCCChHHHHHHHH---C-CCCEEEEEeCChHHHHHHHHHHHHcCC-CCEEEEeccccccCCCC---cC--CC
Q 022962 122 NLKLVDVGTGAGLPGLVLAIA---C-PDWKVTLLESMNKRCVFLEHAVSLTQL-LNVQIVRGRAETLGKDV---SF--RE 191 (289)
Q Consensus 122 ~~~VLDiGcG~G~~~l~la~~---~-p~~~V~~iD~s~~~l~~a~~~~~~~~l-~ni~~~~~d~~~~~~~~---~~--~~ 191 (289)
+..|+++|.=.|.-++.+|.. . +.++|+|||++-...... ..+...+ ++|++++||..+...-. .. ..
T Consensus 33 Pd~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~~~~--a~e~hp~~~rI~~i~Gds~d~~~~~~v~~~~~~~ 110 (206)
T PF04989_consen 33 PDLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPHNRK--AIESHPMSPRITFIQGDSIDPEIVDQVRELASPP 110 (206)
T ss_dssp -SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT--S---GGGG----TTEEEEES-SSSTHHHHTSGSS----
T ss_pred CCeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchhchH--HHhhccccCceEEEECCCCCHHHHHHHHHhhccC
Confidence 679999999999988877643 3 678999999965432211 1222222 47999999887642110 01 12
Q ss_pred CceEEEEcCc---ccHHHHHHHHccccccCeEEEEEE
Q 022962 192 QYDVAVARAV---AEMRILAEYCLPLVRVGGLFVAAK 225 (289)
Q Consensus 192 ~fD~V~sn~~---~~~~~ll~~~~~~LkpgG~l~~~~ 225 (289)
...+|+-.+- +..-..++....++++|++++++.
T Consensus 111 ~~vlVilDs~H~~~hvl~eL~~y~plv~~G~Y~IVeD 147 (206)
T PF04989_consen 111 HPVLVILDSSHTHEHVLAELEAYAPLVSPGSYLIVED 147 (206)
T ss_dssp SSEEEEESS----SSHHHHHHHHHHT--TT-EEEETS
T ss_pred CceEEEECCCccHHHHHHHHHHhCccCCCCCEEEEEe
Confidence 4567776553 566777777889999999999764
No 281
>PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes. This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A.
Probab=96.06 E-value=0.012 Score=50.90 Aligned_cols=103 Identities=15% Similarity=0.054 Sum_probs=63.7
Q ss_pred CCeEEEEcCCCChHHHHHHHHCCC--CEEEEEeCChHHHHHHHHHHHHc-------------------------------
Q 022962 122 NLKLVDVGTGAGLPGLVLAIACPD--WKVTLLESMNKRCVFLEHAVSLT------------------------------- 168 (289)
Q Consensus 122 ~~~VLDiGcG~G~~~l~la~~~p~--~~V~~iD~s~~~l~~a~~~~~~~------------------------------- 168 (289)
+.++.|=|||+|.+.-.+...++. ..|+|-|+++++++.|++|..-+
T Consensus 52 p~tLyDPCCG~gyLLTVlGLLh~~~l~~v~aSDId~~aL~lA~kNL~LLt~eGL~~R~~eL~~~~e~~~kps~~eAl~sA 131 (246)
T PF11599_consen 52 PYTLYDPCCGSGYLLTVLGLLHRRRLRRVYASDIDEDALELARKNLSLLTPEGLEARREELRELYEQYGKPSHAEALESA 131 (246)
T ss_dssp -EEEEETT-TTSHHHHHHHHHTGGGEEEEEEEES-HHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHH--HHHHHHHHHH
T ss_pred CeeeeccCCCccHHHHHHHHhhhHHHHhHhcccCCHHHHHHHHHhhhhccHhHHHHHHHHHHHHHHHcCCchHHHHHHHH
Confidence 568999999999998888877755 58999999999999999874321
Q ss_pred -----------CCCCEEEEeccccccCCC--CcCCCCceEEEEc-------------CcccHHHHHHHHccccccCeEEE
Q 022962 169 -----------QLLNVQIVRGRAETLGKD--VSFREQYDVAVAR-------------AVAEMRILAEYCLPLVRVGGLFV 222 (289)
Q Consensus 169 -----------~l~ni~~~~~d~~~~~~~--~~~~~~fD~V~sn-------------~~~~~~~ll~~~~~~LkpgG~l~ 222 (289)
+.....+.+.|+.+.... .......|+|+.. +-.+...++..+..+| |++.++
T Consensus 132 ~RL~~~l~~~g~~~p~~~~~aDvf~~~~~~~~~~~~~~diViTDlPYG~~t~W~g~~~~~p~~~ml~~l~~vL-p~~sVV 210 (246)
T PF11599_consen 132 DRLRERLAAEGGDEPHAIFRADVFDPSPLAVLDAGFTPDIVITDLPYGEMTSWQGEGSGGPVAQMLNSLAPVL-PERSVV 210 (246)
T ss_dssp HHHHHHHHHTTSS--EEEEE--TT-HHHHHHHHTT---SEEEEE--CCCSSSTTS---HHHHHHHHHHHHCCS--TT-EE
T ss_pred HHHHHHHHhcCCCCchhheeecccCCchhhhhccCCCCCEEEecCCCcccccccCCCCCCcHHHHHHHHHhhC-CCCcEE
Confidence 111245667777663210 0112346999986 1225789999999999 555544
Q ss_pred EEE
Q 022962 223 AAK 225 (289)
Q Consensus 223 ~~~ 225 (289)
...
T Consensus 211 ~v~ 213 (246)
T PF11599_consen 211 AVS 213 (246)
T ss_dssp EEE
T ss_pred EEe
Confidence 444
No 282
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=96.05 E-value=0.0099 Score=55.56 Aligned_cols=96 Identities=22% Similarity=0.161 Sum_probs=64.0
Q ss_pred CCeEEEEcCCC-ChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEec-cc-cccCCCCcCCCCceEEE-
Q 022962 122 NLKLVDVGTGA-GLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRG-RA-ETLGKDVSFREQYDVAV- 197 (289)
Q Consensus 122 ~~~VLDiGcG~-G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~-d~-~~~~~~~~~~~~fD~V~- 197 (289)
+.+|+=+|||+ |.+++.+|+..+..+|+++|.+++.++.|++.. +.+.+..... +. ..... ......+|+++
T Consensus 169 ~~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~~~---g~~~~~~~~~~~~~~~~~~-~t~g~g~D~vie 244 (350)
T COG1063 169 GGTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKEAG---GADVVVNPSEDDAGAEILE-LTGGRGADVVIE 244 (350)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHhC---CCeEeecCccccHHHHHHH-HhCCCCCCEEEE
Confidence 44999999996 777777888888899999999999999887731 2111111111 11 10100 01123699998
Q ss_pred EcCcccHHHHHHHHccccccCeEEEEE
Q 022962 198 ARAVAEMRILAEYCLPLVRVGGLFVAA 224 (289)
Q Consensus 198 sn~~~~~~~ll~~~~~~LkpgG~l~~~ 224 (289)
+.+ ....+.++.+++++||.+.+.
T Consensus 245 ~~G---~~~~~~~ai~~~r~gG~v~~v 268 (350)
T COG1063 245 AVG---SPPALDQALEALRPGGTVVVV 268 (350)
T ss_pred CCC---CHHHHHHHHHHhcCCCEEEEE
Confidence 444 345778888999999999875
No 283
>KOG2920 consensus Predicted methyltransferase [General function prediction only]
Probab=96.05 E-value=0.0039 Score=55.94 Aligned_cols=100 Identities=16% Similarity=0.238 Sum_probs=59.6
Q ss_pred CCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHH-------HHHHH--HcCCC-CEEEEeccccccCCCCcCC
Q 022962 121 SNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFL-------EHAVS--LTQLL-NVQIVRGRAETLGKDVSFR 190 (289)
Q Consensus 121 ~~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a-------~~~~~--~~~l~-ni~~~~~d~~~~~~~~~~~ 190 (289)
.+++|||+|||+|.+++...+. ....++..|.|.+.+..- +..+. ..... -..+.+....+.... +.
T Consensus 116 ~~k~vLELgCg~~Lp~i~~~~~-~~~~~~fqD~na~vl~~~t~pn~~~~~~~~~~~~e~~~~~~i~~s~l~dg~~~--~t 192 (282)
T KOG2920|consen 116 SGKRVLELGCGAALPGIFAFVK-GAVSVHFQDFNAEVLRLVTLPNILVNSHAGVEEKENHKVDEILNSLLSDGVFN--HT 192 (282)
T ss_pred cCceeEecCCcccccchhhhhh-ccceeeeEecchhheeeecccceecchhhhhhhhhcccceeccccccccchhh--hc
Confidence 3789999999999999997765 347899999988776211 11111 00000 123333311122111 12
Q ss_pred C--CceEEEEcC----cccHHHH-HHHHccccccCeEEEE
Q 022962 191 E--QYDVAVARA----VAEMRIL-AEYCLPLVRVGGLFVA 223 (289)
Q Consensus 191 ~--~fD~V~sn~----~~~~~~l-l~~~~~~LkpgG~l~~ 223 (289)
+ .||+|.+.. ....+.+ ...-..+++++|.+++
T Consensus 193 ~~~~ydlIlsSetiy~~~~~~~~~~~~r~~l~~~D~~~~~ 232 (282)
T KOG2920|consen 193 ERTHYDLILSSETIYSIDSLAVLYLLHRPCLLKTDGVFYV 232 (282)
T ss_pred cccchhhhhhhhhhhCcchhhhhHhhhhhhcCCccchhhh
Confidence 3 799999873 3344444 5555678889999875
No 284
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=96.03 E-value=0.042 Score=52.83 Aligned_cols=97 Identities=14% Similarity=0.201 Sum_probs=70.8
Q ss_pred eEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCcCCCCceEEEEcC---
Q 022962 124 KLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARA--- 200 (289)
Q Consensus 124 ~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~~~~~fD~V~sn~--- 200 (289)
+++-+|||.=-+...+-. ..-..|+-+|+|+-.++.....-. -.-.-+.+...|+..+..+ +++||+|+--+
T Consensus 51 ~~l~lGCGNS~l~e~ly~-~G~~dI~~iD~S~V~V~~m~~~~~-~~~~~~~~~~~d~~~l~fe---dESFdiVIdkGtlD 125 (482)
T KOG2352|consen 51 KILQLGCGNSELSEHLYK-NGFEDITNIDSSSVVVAAMQVRNA-KERPEMQMVEMDMDQLVFE---DESFDIVIDKGTLD 125 (482)
T ss_pred eeEeecCCCCHHHHHHHh-cCCCCceeccccHHHHHHHHhccc-cCCcceEEEEecchhccCC---CcceeEEEecCccc
Confidence 899999999876665543 234689999999988877665321 1122488889999887765 37899998752
Q ss_pred -----------cccHHHHHHHHccccccCeEEEEEE
Q 022962 201 -----------VAEMRILAEYCLPLVRVGGLFVAAK 225 (289)
Q Consensus 201 -----------~~~~~~ll~~~~~~LkpgG~l~~~~ 225 (289)
.......+.++.++|++||+++.+.
T Consensus 126 al~~de~a~~~~~~v~~~~~eVsrvl~~~gk~~svt 161 (482)
T KOG2352|consen 126 ALFEDEDALLNTAHVSNMLDEVSRVLAPGGKYISVT 161 (482)
T ss_pred cccCCchhhhhhHHhhHHHhhHHHHhccCCEEEEEE
Confidence 1134577889999999999987543
No 285
>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=95.84 E-value=0.038 Score=50.66 Aligned_cols=102 Identities=18% Similarity=0.175 Sum_probs=68.2
Q ss_pred CCCCCCCeEEEEcCCC-ChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEec-c-ccccC---CCCcCC
Q 022962 117 SSCNSNLKLVDVGTGA-GLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRG-R-AETLG---KDVSFR 190 (289)
Q Consensus 117 ~~~~~~~~VLDiGcG~-G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~-d-~~~~~---~~~~~~ 190 (289)
..++.+.+||=+|+|+ |..++..|+.....+|+.+|+++..++.|++ +|.+.+..... + +.++. ....-.
T Consensus 165 ~~vk~Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~~~Rle~Ak~----~Ga~~~~~~~~~~~~~~~~~~v~~~~g~ 240 (354)
T KOG0024|consen 165 AGVKKGSKVLVLGAGPIGLLTGLVAKAMGASDVVITDLVANRLELAKK----FGATVTDPSSHKSSPQELAELVEKALGK 240 (354)
T ss_pred cCcccCCeEEEECCcHHHHHHHHHHHHcCCCcEEEeecCHHHHHHHHH----hCCeEEeeccccccHHHHHHHHHhhccc
Confidence 3567799999999995 8888888999999999999999999998877 56543322211 1 12211 000011
Q ss_pred CCceEEEEcCcccHHHHHHHHccccccCeEEEEE
Q 022962 191 EQYDVAVARAVAEMRILAEYCLPLVRVGGLFVAA 224 (289)
Q Consensus 191 ~~fD~V~sn~~~~~~~ll~~~~~~LkpgG~l~~~ 224 (289)
..+|+.+.-.-. +..++.+...+++||.+++.
T Consensus 241 ~~~d~~~dCsG~--~~~~~aai~a~r~gGt~vlv 272 (354)
T KOG0024|consen 241 KQPDVTFDCSGA--EVTIRAAIKATRSGGTVVLV 272 (354)
T ss_pred cCCCeEEEccCc--hHHHHHHHHHhccCCEEEEe
Confidence 458988855333 23445556789999996643
No 286
>KOG4058 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.69 E-value=0.044 Score=44.72 Aligned_cols=98 Identities=18% Similarity=0.051 Sum_probs=69.3
Q ss_pred CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCC-CEEEEeccccccCCCCcCCCCceEEEEc-
Q 022962 122 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLL-NVQIVRGRAETLGKDVSFREQYDVAVAR- 199 (289)
Q Consensus 122 ~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~-ni~~~~~d~~~~~~~~~~~~~fD~V~sn- 199 (289)
.++.+|+|+|.|.+-+..|+. .-..-+|+|+++-.+.+++-.+-+.|.. ..+|...|+-.... +.|..|+..
T Consensus 73 ~GklvDlGSGDGRiVlaaar~-g~~~a~GvELNpwLVaysrl~a~R~g~~k~trf~RkdlwK~dl-----~dy~~vviFg 146 (199)
T KOG4058|consen 73 KGKLVDLGSGDGRIVLAAARC-GLRPAVGVELNPWLVAYSRLHAWRAGCAKSTRFRRKDLWKVDL-----RDYRNVVIFG 146 (199)
T ss_pred CCcEEeccCCCceeehhhhhh-CCCcCCceeccHHHHHHHHHHHHHHhcccchhhhhhhhhhccc-----cccceEEEee
Confidence 568999999999987776654 2467889999999999999988887774 58888888877654 335544444
Q ss_pred CcccHHHHHHHHccccccCeEEEEEE
Q 022962 200 AVAEMRILAEYCLPLVRVGGLFVAAK 225 (289)
Q Consensus 200 ~~~~~~~ll~~~~~~LkpgG~l~~~~ 225 (289)
+-.-+..+-.+...-+..+-.++...
T Consensus 147 aes~m~dLe~KL~~E~p~nt~vvacR 172 (199)
T KOG4058|consen 147 AESVMPDLEDKLRTELPANTRVVACR 172 (199)
T ss_pred hHHHHhhhHHHHHhhCcCCCeEEEEe
Confidence 33334445555555666777776544
No 287
>KOG1099 consensus SAM-dependent methyltransferase/cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=95.58 E-value=0.023 Score=49.56 Aligned_cols=91 Identities=19% Similarity=0.237 Sum_probs=64.0
Q ss_pred CCeEEEEcCCCChHHHHHHHHC-C----C----CEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCC----Cc
Q 022962 122 NLKLVDVGTGAGLPGLVLAIAC-P----D----WKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKD----VS 188 (289)
Q Consensus 122 ~~~VLDiGcG~G~~~l~la~~~-p----~----~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~----~~ 188 (289)
-.+++|+|+-.|.|+-.|++.. . . .+|++||+.+-+ .++.|.-+++||...... ..
T Consensus 42 v~rvVDLCAAPGSWSQvlSrkL~~~~~~~~~~~~kIVaVDLQ~Ma-----------PI~GV~qlq~DIT~~stae~Ii~h 110 (294)
T KOG1099|consen 42 VKRVVDLCAAPGSWSQVLSRKLYKPLPSSGERDKKIVAVDLQPMA-----------PIEGVIQLQGDITSASTAEAIIEH 110 (294)
T ss_pred hhHHhhhhcCCCcHHHHHHHHHhccCCCcchhhccEEEEecccCC-----------ccCceEEeecccCCHhHHHHHHHH
Confidence 4689999999999999998753 1 1 139999986522 345688889999764211 01
Q ss_pred C-CCCceEEEEcC------ccc---------HHHHHHHHccccccCeEEEE
Q 022962 189 F-REQYDVAVARA------VAE---------MRILAEYCLPLVRVGGLFVA 223 (289)
Q Consensus 189 ~-~~~fD~V~sn~------~~~---------~~~ll~~~~~~LkpgG~l~~ 223 (289)
| .++.|+|+|.+ +.+ +-..+.-...+|||||.|+.
T Consensus 111 fggekAdlVvcDGAPDvTGlHd~DEy~Q~qLllaAl~i~t~Vlk~Gg~FVa 161 (294)
T KOG1099|consen 111 FGGEKADLVVCDGAPDVTGLHDLDEYVQAQLLLAALNIATCVLKPGGSFVA 161 (294)
T ss_pred hCCCCccEEEeCCCCCccccccHHHHHHHHHHHHHHHHHhheecCCCeeeh
Confidence 2 35899999984 222 23455667889999999983
No 288
>PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2.1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A ....
Probab=95.54 E-value=0.19 Score=45.69 Aligned_cols=114 Identities=15% Similarity=0.166 Sum_probs=73.0
Q ss_pred eEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCcCCCCceEEEEcC---
Q 022962 124 KLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARA--- 200 (289)
Q Consensus 124 ~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~~~~~fD~V~sn~--- 200 (289)
+++|+-||.|.+++.+.... ---|.++|+++.+++..+.|.. ....+|+.++... ..++.+|+++...
T Consensus 2 ~~~dlFsG~Gg~~~g~~~ag-~~~~~a~e~~~~a~~~y~~N~~-------~~~~~Di~~~~~~-~l~~~~D~l~ggpPCQ 72 (335)
T PF00145_consen 2 KVIDLFSGIGGFSLGLEQAG-FEVVWAVEIDPDACETYKANFP-------EVICGDITEIDPS-DLPKDVDLLIGGPPCQ 72 (335)
T ss_dssp EEEEET-TTTHHHHHHHHTT-EEEEEEEESSHHHHHHHHHHHT-------EEEESHGGGCHHH-HHHHT-SEEEEE---T
T ss_pred cEEEEccCccHHHHHHHhcC-cEEEEEeecCHHHHHhhhhccc-------ccccccccccccc-cccccceEEEeccCCc
Confidence 68999999999888877652 2368899999999888888654 6778899887543 1222599999761
Q ss_pred ----------ccc-----HHHHHHHHccccccCeEEEEEE--c---CCcHHHHHHHHHHHHHhCCeEe
Q 022962 201 ----------VAE-----MRILAEYCLPLVRVGGLFVAAK--G---HDPQEEVKNSERAVQLMGASLL 248 (289)
Q Consensus 201 ----------~~~-----~~~ll~~~~~~LkpgG~l~~~~--g---~~~~~ei~~~~~~l~~~g~~~~ 248 (289)
..+ +..+++.+ ..++|.- ++++- | ......+..+.+.+++.|+.+.
T Consensus 73 ~fS~ag~~~~~~d~r~~L~~~~~~~v-~~~~Pk~-~~~ENV~~l~~~~~~~~~~~i~~~l~~lGY~v~ 138 (335)
T PF00145_consen 73 GFSIAGKRKGFDDPRNSLFFEFLRIV-KELKPKY-FLLENVPGLLSSKNGEVFKEILEELEELGYNVQ 138 (335)
T ss_dssp TTSTTSTHHCCCCHTTSHHHHHHHHH-HHHS-SE-EEEEEEGGGGTGGGHHHHHHHHHHHHHTTEEEE
T ss_pred eEeccccccccccccchhhHHHHHHH-hhccceE-EEecccceeeccccccccccccccccccceeeh
Confidence 111 23333333 3466754 44453 2 1223556778888999998654
No 289
>KOG2078 consensus tRNA modification enzyme [RNA processing and modification]
Probab=95.35 E-value=0.0096 Score=56.19 Aligned_cols=66 Identities=17% Similarity=0.125 Sum_probs=57.2
Q ss_pred CCCCCCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCC--CEEEEeccccccC
Q 022962 117 SSCNSNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLL--NVQIVRGRAETLG 184 (289)
Q Consensus 117 ~~~~~~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~--ni~~~~~d~~~~~ 184 (289)
..+++|..|.|+.||.|-.++.++.. ++.|++-|.+++++++++.|+..+.++ +|++++.|+.++-
T Consensus 245 g~fk~gevv~D~FaGvGPfa~Pa~kK--~crV~aNDLNpesik~Lk~ni~lNkv~~~~iei~Nmda~~Fl 312 (495)
T KOG2078|consen 245 GLFKPGEVVCDVFAGVGPFALPAAKK--GCRVYANDLNPESIKWLKANIKLNKVDPSAIEIFNMDAKDFL 312 (495)
T ss_pred hccCCcchhhhhhcCcCccccchhhc--CcEEEecCCCHHHHHHHHHhccccccchhheeeecccHHHHh
Confidence 34677899999999999999998866 599999999999999999999888774 4888888887653
No 290
>PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised.; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A.
Probab=95.28 E-value=0.083 Score=46.52 Aligned_cols=74 Identities=24% Similarity=0.287 Sum_probs=47.6
Q ss_pred CeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHH---HcC-C-----CCEEEEeccccccCCCCcCCCCc
Q 022962 123 LKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVS---LTQ-L-----LNVQIVRGRAETLGKDVSFREQY 193 (289)
Q Consensus 123 ~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~---~~~-l-----~ni~~~~~d~~~~~~~~~~~~~f 193 (289)
.+|||.=+|-|.=++.+|.. +++|+++|.|+-.....+.-.+ ... . .+|+++++|..++-. ..+++|
T Consensus 77 ~~VLDaTaGLG~Da~vlA~~--G~~V~~lErspvia~Ll~dGL~r~~~~~~~~~~~~~ri~l~~~d~~~~L~--~~~~s~ 152 (234)
T PF04445_consen 77 PSVLDATAGLGRDAFVLASL--GCKVTGLERSPVIAALLKDGLKRAQQDPELLAEAMRRIQLIHGDALEYLR--QPDNSF 152 (234)
T ss_dssp --EEETT-TTSHHHHHHHHH--T--EEEEE--HHHHHHHHHHHHHHHHSTTTHHHHHHHEEEEES-CCCHCC--CHSS--
T ss_pred CEEEECCCcchHHHHHHHcc--CCeEEEEECCHHHHHHHHHHHHHHHhCcHhHHHHHhCCEEEcCCHHHHHh--hcCCCC
Confidence 48999999999999999965 6799999999988777765322 211 1 369999999988643 224789
Q ss_pred eEEEEcC
Q 022962 194 DVAVARA 200 (289)
Q Consensus 194 D~V~sn~ 200 (289)
|+|....
T Consensus 153 DVVY~DP 159 (234)
T PF04445_consen 153 DVVYFDP 159 (234)
T ss_dssp SEEEE--
T ss_pred CEEEECC
Confidence 9999985
No 291
>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members. This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio
Probab=95.08 E-value=0.11 Score=47.35 Aligned_cols=97 Identities=15% Similarity=0.142 Sum_probs=60.5
Q ss_pred CCCCCeEEEEcCCC-ChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEec-cccc-cCCCCcCCCCceE
Q 022962 119 CNSNLKLVDVGTGA-GLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRG-RAET-LGKDVSFREQYDV 195 (289)
Q Consensus 119 ~~~~~~VLDiGcG~-G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~-d~~~-~~~~~~~~~~fD~ 195 (289)
+..+.+||..|+|. |..++.+|+.. +.+|++++.+++..+.+++ .|.+.+-.... +..+ +.. ...+.+|+
T Consensus 163 ~~~~~~vli~g~g~vG~~~~~la~~~-G~~V~~~~~s~~~~~~~~~----~g~~~~~~~~~~~~~~~~~~--~~~~~~D~ 235 (338)
T cd08254 163 VKPGETVLVIGLGGLGLNAVQIAKAM-GAAVIAVDIKEEKLELAKE----LGADEVLNSLDDSPKDKKAA--GLGGGFDV 235 (338)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHc-CCEEEEEcCCHHHHHHHHH----hCCCEEEcCCCcCHHHHHHH--hcCCCceE
Confidence 34577899988763 66667777765 5789999999988776644 45432211111 1100 000 11356999
Q ss_pred EEEcCcccHHHHHHHHccccccCeEEEEE
Q 022962 196 AVARAVAEMRILAEYCLPLVRVGGLFVAA 224 (289)
Q Consensus 196 V~sn~~~~~~~ll~~~~~~LkpgG~l~~~ 224 (289)
|+...-. ...++.+.+.|+++|.++..
T Consensus 236 vid~~g~--~~~~~~~~~~l~~~G~~v~~ 262 (338)
T cd08254 236 IFDFVGT--QPTFEDAQKAVKPGGRIVVV 262 (338)
T ss_pred EEECCCC--HHHHHHHHHHhhcCCEEEEE
Confidence 9865322 34677778999999999864
No 292
>KOG2912 consensus Predicted DNA methylase [Function unknown]
Probab=95.06 E-value=0.025 Score=51.57 Aligned_cols=74 Identities=20% Similarity=0.267 Sum_probs=52.0
Q ss_pred EEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCC-CEEEEeccccc-cCCCC---cCCCCceEEEEc
Q 022962 126 VDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLL-NVQIVRGRAET-LGKDV---SFREQYDVAVAR 199 (289)
Q Consensus 126 LDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~-ni~~~~~d~~~-~~~~~---~~~~~fD~V~sn 199 (289)
+|||+|+-++--.+....-++...|+|+++.....|..|+.+++++ .+.+++..... +-.+. ..+..||+++||
T Consensus 107 iDIgtgasci~~llg~rq~n~~f~~teidd~s~~~a~snV~qn~lss~ikvV~~~~~ktll~d~~~~~~e~~ydFcMcN 185 (419)
T KOG2912|consen 107 IDIGTGASCIYPLLGARQNNWYFLATEIDDMSFNYAKSNVEQNNLSSLIKVVKVEPQKTLLMDALKEESEIIYDFCMCN 185 (419)
T ss_pred eeccCchhhhHHhhhchhccceeeeeeccccccchhhccccccccccceeeEEecchhhcchhhhccCccceeeEEecC
Confidence 7999998875433332234689999999999999999999999885 47777653322 11110 112469999999
No 293
>PF07279 DUF1442: Protein of unknown function (DUF1442); InterPro: IPR009902 This family consists of several hypothetical Arabidopsis thaliana proteins of around 225 residues in length. The function of this family is unknown.
Probab=95.02 E-value=0.35 Score=41.93 Aligned_cols=100 Identities=15% Similarity=0.122 Sum_probs=68.9
Q ss_pred CCeEEEEcCCCCh----HHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCC-EEEEeccc-cccCCCCcCCCCceE
Q 022962 122 NLKLVDVGTGAGL----PGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLN-VQIVRGRA-ETLGKDVSFREQYDV 195 (289)
Q Consensus 122 ~~~VLDiGcG~G~----~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~n-i~~~~~d~-~~~~~~~~~~~~fD~ 195 (289)
...+++++|+.|. +++..|....++++++|-.++..+...++.....++.+ ++|+.++. +++-.. + ...|+
T Consensus 42 AkliVe~~s~g~~~~ttiaLaaAAr~TgGR~vCIvp~~~~~~~~~~~l~~~~~~~~vEfvvg~~~e~~~~~--~-~~iDF 118 (218)
T PF07279_consen 42 AKLIVEAWSSGGAISTTIALAAAARQTGGRHVCIVPDEQSLSEYKKALGEAGLSDVVEFVVGEAPEEVMPG--L-KGIDF 118 (218)
T ss_pred ceEEEEEecCCCchHhHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHhhccccccceEEecCCHHHHHhh--c-cCCCE
Confidence 5689999777553 44444555668899999999998888888888888765 69988874 443321 2 46888
Q ss_pred EEEcC-cccHH-HHHHHHccccccCeEEEEEEc
Q 022962 196 AVARA-VAEMR-ILAEYCLPLVRVGGLFVAAKG 226 (289)
Q Consensus 196 V~sn~-~~~~~-~ll~~~~~~LkpgG~l~~~~g 226 (289)
++... ..+.. .+++.+. +.|.|-+++.+.
T Consensus 119 ~vVDc~~~d~~~~vl~~~~--~~~~GaVVV~~N 149 (218)
T PF07279_consen 119 VVVDCKREDFAARVLRAAK--LSPRGAVVVCYN 149 (218)
T ss_pred EEEeCCchhHHHHHHHHhc--cCCCceEEEEec
Confidence 88653 34454 7776544 556777666554
No 294
>TIGR00675 dcm DNA-methyltransferase (dcm). All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=95.00 E-value=0.39 Score=44.25 Aligned_cols=114 Identities=15% Similarity=0.122 Sum_probs=69.5
Q ss_pred EEEEcCCCChHHHHHHHHCCCCE-EEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCcCCCCceEEEEcC---
Q 022962 125 LVDVGTGAGLPGLVLAIACPDWK-VTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARA--- 200 (289)
Q Consensus 125 VLDiGcG~G~~~l~la~~~p~~~-V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~~~~~fD~V~sn~--- 200 (289)
|+|+-||.|.+++-+.+. +.+ +.++|+++.+++..+.|.. + .++++|+.++.... . ..+|+++...
T Consensus 1 vidLF~G~GG~~~Gl~~a--G~~~~~a~e~~~~a~~ty~~N~~-----~-~~~~~Di~~~~~~~-~-~~~dvl~gg~PCq 70 (315)
T TIGR00675 1 FIDLFAGIGGIRLGFEQA--GFKCVFASEIDKYAQKTYEANFG-----N-KVPFGDITKISPSD-I-PDFDILLGGFPCQ 70 (315)
T ss_pred CEEEecCccHHHHHHHHc--CCeEEEEEeCCHHHHHHHHHhCC-----C-CCCccChhhhhhhh-C-CCcCEEEecCCCc
Confidence 589999999988877654 455 5679999999888877642 2 34567888875321 1 3589998751
Q ss_pred ----------ccc-HHHHHHHHc---cccccCeEEEEEEcC-----CcHHHHHHHHHHHHHhCCeEeE
Q 022962 201 ----------VAE-MRILAEYCL---PLVRVGGLFVAAKGH-----DPQEEVKNSERAVQLMGASLLQ 249 (289)
Q Consensus 201 ----------~~~-~~~ll~~~~---~~LkpgG~l~~~~g~-----~~~~ei~~~~~~l~~~g~~~~~ 249 (289)
..+ ...++.... +.++|. .++++--. .....+..+...++..|+.+..
T Consensus 71 ~fS~ag~~~~~~d~r~~L~~~~~r~i~~~~P~-~~v~ENV~~l~~~~~~~~~~~i~~~l~~~GY~v~~ 137 (315)
T TIGR00675 71 PFSIAGKRKGFEDTRGTLFFEIVRILKEKKPK-FFLLENVKGLVSHDKGRTFKVIIETLEELGYKVYY 137 (315)
T ss_pred ccchhcccCCCCCchhhHHHHHHHHHhhcCCC-EEEeeccHHHHhcccchHHHHHHHHHHhCCCEEEE
Confidence 112 112222222 335665 33443211 1124456677788899997643
No 295
>KOG1227 consensus Putative methyltransferase [General function prediction only]
Probab=94.97 E-value=0.011 Score=53.38 Aligned_cols=98 Identities=13% Similarity=0.060 Sum_probs=67.3
Q ss_pred CCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCC-CEEEEeccccccCCCCcCCCCceEEEEc
Q 022962 121 SNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLL-NVQIVRGRAETLGKDVSFREQYDVAVAR 199 (289)
Q Consensus 121 ~~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~-ni~~~~~d~~~~~~~~~~~~~fD~V~sn 199 (289)
.+..|+|+=+|-|++++..........|+|+|.++..++.++.+++.++.. ...++.+|-.... ++...|-|.-.
T Consensus 194 ~~eviVDLYAGIGYFTlpflV~agAk~V~A~EwNp~svEaLrR~~~~N~V~~r~~i~~gd~R~~~----~~~~AdrVnLG 269 (351)
T KOG1227|consen 194 DGEVIVDLYAGIGYFTLPFLVTAGAKTVFACEWNPWSVEALRRNAEANNVMDRCRITEGDNRNPK----PRLRADRVNLG 269 (351)
T ss_pred ccchhhhhhcccceEEeehhhccCccEEEEEecCHHHHHHHHHHHHhcchHHHHHhhhccccccC----ccccchheeec
Confidence 367899999999999996555556789999999999999999999988653 2444455544332 23566777665
Q ss_pred Ccc----cHHHHHHHHccccccCeE-EEEEEc
Q 022962 200 AVA----EMRILAEYCLPLVRVGGL-FVAAKG 226 (289)
Q Consensus 200 ~~~----~~~~ll~~~~~~LkpgG~-l~~~~g 226 (289)
-++ .+.... ++|||.|- ++-.+.
T Consensus 270 LlPSse~~W~~A~----k~Lk~eggsilHIHe 297 (351)
T KOG1227|consen 270 LLPSSEQGWPTAI----KALKPEGGSILHIHE 297 (351)
T ss_pred cccccccchHHHH----HHhhhcCCcEEEEec
Confidence 333 344443 46776554 665543
No 296
>KOG2671 consensus Putative RNA methylase [Replication, recombination and repair]
Probab=94.89 E-value=0.043 Score=50.63 Aligned_cols=105 Identities=10% Similarity=-0.058 Sum_probs=77.4
Q ss_pred CCCCCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHH-------HHHHHHHHcCCC-C-EEEEeccccccCCCCc
Q 022962 118 SCNSNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCV-------FLEHAVSLTQLL-N-VQIVRGRAETLGKDVS 188 (289)
Q Consensus 118 ~~~~~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~-------~a~~~~~~~~l~-n-i~~~~~d~~~~~~~~~ 188 (289)
..++|.-|.|==.|||.+.+..| +-++.|.|.||+-.++. -.+.|.+..|.. . +.++.+|....+.-
T Consensus 205 mv~pGdivyDPFVGTGslLvsaa--~FGa~viGtDIDyr~vragrg~~~si~aNFkQYg~~~~fldvl~~D~sn~~~r-- 280 (421)
T KOG2671|consen 205 MVKPGDIVYDPFVGTGSLLVSAA--HFGAYVIGTDIDYRTVRAGRGEDESIKANFKQYGSSSQFLDVLTADFSNPPLR-- 280 (421)
T ss_pred ccCCCCEEecCccccCceeeehh--hhcceeeccccchheeecccCCCcchhHhHHHhCCcchhhheeeecccCcchh--
Confidence 34678999999889997655544 34789999999988776 235577778853 2 67778887764432
Q ss_pred CCCCceEEEEcC-------------------------------------cccHHHHHHHHccccccCeEEEEEEc
Q 022962 189 FREQYDVAVARA-------------------------------------VAEMRILAEYCLPLVRVGGLFVAAKG 226 (289)
Q Consensus 189 ~~~~fD~V~sn~-------------------------------------~~~~~~ll~~~~~~LkpgG~l~~~~g 226 (289)
....||.|+|.. ..-+..++...++.|..||++++..+
T Consensus 281 sn~~fDaIvcDPPYGVRe~~rk~~~k~~~r~~~~~~~~~h~p~~~~ysl~~~v~dll~fss~~L~~ggrlv~w~p 355 (421)
T KOG2671|consen 281 SNLKFDAIVCDPPYGVREGARKTGKKKSVRTTEESSRGDHYPSTEQYSLSSLVYDLLCFSSRRLVDGGRLVFWLP 355 (421)
T ss_pred hcceeeEEEeCCCcchhhhhhhhcccCcccCcccccccccCCccchhHHHHHHhhHHHhhHhhhhcCceEEEecC
Confidence 146899999981 01246788899999999999998765
No 297
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=94.82 E-value=0.15 Score=47.07 Aligned_cols=95 Identities=11% Similarity=0.107 Sum_probs=56.2
Q ss_pred CCCeEEEEcCC-CChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCE-EEEeccccccCCCCcCCCCceEEEE
Q 022962 121 SNLKLVDVGTG-AGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNV-QIVRGRAETLGKDVSFREQYDVAVA 198 (289)
Q Consensus 121 ~~~~VLDiGcG-~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni-~~~~~d~~~~~~~~~~~~~fD~V~s 198 (289)
++.+||=.||| .|..++.+|+.....+|+++|.+++.++.+++ +|.+.+ ..-..++.+... ..+.+|+|+-
T Consensus 169 ~g~~VlV~G~G~vG~~aiqlak~~G~~~Vi~~~~~~~~~~~a~~----lGa~~vi~~~~~~~~~~~~---~~g~~D~vid 241 (343)
T PRK09880 169 QGKRVFVSGVGPIGCLIVAAVKTLGAAEIVCADVSPRSLSLARE----MGADKLVNPQNDDLDHYKA---EKGYFDVSFE 241 (343)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHHHH----cCCcEEecCCcccHHHHhc---cCCCCCEEEE
Confidence 37789888864 23333445655544479999999988777654 564321 111112222211 1235899885
Q ss_pred cCcccHHHHHHHHccccccCeEEEEE
Q 022962 199 RAVAEMRILAEYCLPLVRVGGLFVAA 224 (289)
Q Consensus 199 n~~~~~~~ll~~~~~~LkpgG~l~~~ 224 (289)
..-. ...++.+.+.|++||+++..
T Consensus 242 ~~G~--~~~~~~~~~~l~~~G~iv~~ 265 (343)
T PRK09880 242 VSGH--PSSINTCLEVTRAKGVMVQV 265 (343)
T ss_pred CCCC--HHHHHHHHHHhhcCCEEEEE
Confidence 5322 23556667889999998865
No 298
>KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism]
Probab=94.68 E-value=0.67 Score=42.15 Aligned_cols=149 Identities=12% Similarity=0.031 Sum_probs=93.1
Q ss_pred CCCCCCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHc----CCCCEEEEeccccccCCCCcCCCC
Q 022962 117 SSCNSNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLT----QLLNVQIVRGRAETLGKDVSFREQ 192 (289)
Q Consensus 117 ~~~~~~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~----~l~ni~~~~~d~~~~~~~~~~~~~ 192 (289)
.+..+..+||=||-|.|......++.-.-..+..+|++...++..++..... .-++|.++-+|-..+-.. ...++
T Consensus 117 ~s~~npkkvlVVgggDggvlrevikH~~ve~i~~~eiD~~Vie~sk~y~p~la~gy~~~~v~l~iGDG~~fl~~-~~~~~ 195 (337)
T KOG1562|consen 117 CSHPNPKKVLVVGGGDGGVLREVIKHKSVENILLCEIDENVIESSKQYLPTLACGYEGKKVKLLIGDGFLFLED-LKENP 195 (337)
T ss_pred ccCCCCCeEEEEecCCccceeeeeccccccceeeehhhHHHHHHHHHHhHHHhcccCCCceEEEeccHHHHHHH-hccCC
Confidence 3455678999999999987666565422257999999999888887755443 224689998987765332 11478
Q ss_pred ceEEEEcCc---c-----cHHHHHHHHccccccCeEEEEEEcC--CcHHHHHHHHHHHHHhCCeEeEEeeeecCCCCCce
Q 022962 193 YDVAVARAV---A-----EMRILAEYCLPLVRVGGLFVAAKGH--DPQEEVKNSERAVQLMGASLLQLCSVESQSPFGQR 262 (289)
Q Consensus 193 fD~V~sn~~---~-----~~~~ll~~~~~~LkpgG~l~~~~g~--~~~~ei~~~~~~l~~~g~~~~~~~~~~~~~~~~~r 262 (289)
||+|+...- . -.+.+.+.+.+.||+||+.+..... -...-+++..+..... |.......-..|.-+..+
T Consensus 196 ~dVii~dssdpvgpa~~lf~~~~~~~v~~aLk~dgv~~~q~ec~wl~~~~i~e~r~~~~~~-f~~t~ya~ttvPTypsg~ 274 (337)
T KOG1562|consen 196 FDVIITDSSDPVGPACALFQKPYFGLVLDALKGDGVVCTQGECMWLHLDYIKEGRSFCYVI-FDLTAYAITTVPTYPSGR 274 (337)
T ss_pred ceEEEEecCCccchHHHHHHHHHHHHHHHhhCCCcEEEEecceehHHHHHHHHHHHhHHHh-cCccceeeecCCCCccce
Confidence 999997631 1 2467788899999999998864321 1233344444433333 334444433344334444
Q ss_pred EEEEE
Q 022962 263 TAVVC 267 (289)
Q Consensus 263 ~lv~~ 267 (289)
..+.+
T Consensus 275 igf~l 279 (337)
T KOG1562|consen 275 IGFML 279 (337)
T ss_pred EEEEE
Confidence 43333
No 299
>PF05430 Methyltransf_30: S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR008471 This entry contains several uncharacterised bacterial proteins with no known function.; GO: 0016645 oxidoreductase activity, acting on the CH-NH group of donors, 0055114 oxidation-reduction process; PDB: 2E58_D 3SGL_A 3PVC_A 3AWI_D 3PS9_A 2QY6_A.
Probab=94.62 E-value=0.086 Score=41.85 Aligned_cols=85 Identities=15% Similarity=0.148 Sum_probs=54.9
Q ss_pred CEEEEeccccccCCCCcCCCCceEEEEcCccc-------HHHHHHHHccccccCeEEEEEEcCCcHHHHHHHHHHHHHhC
Q 022962 172 NVQIVRGRAETLGKDVSFREQYDVAVARAVAE-------MRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMG 244 (289)
Q Consensus 172 ni~~~~~d~~~~~~~~~~~~~fD~V~sn~~~~-------~~~ll~~~~~~LkpgG~l~~~~g~~~~~ei~~~~~~l~~~g 244 (289)
++++..+|+.+.-.. ....||+|+-.++++ -.++++.+.++++|||.+.-+... .. +.+.|..+|
T Consensus 32 ~L~L~~gDa~~~l~~--l~~~~Da~ylDgFsP~~nPelWs~e~~~~l~~~~~~~~~l~Tys~a---~~---Vr~~L~~aG 103 (124)
T PF05430_consen 32 TLTLWFGDAREMLPQ--LDARFDAWYLDGFSPAKNPELWSEELFKKLARLSKPGGTLATYSSA---GA---VRRALQQAG 103 (124)
T ss_dssp EEEEEES-HHHHHHH--B-T-EEEEEE-SS-TTTSGGGSSHHHHHHHHHHEEEEEEEEES--B---HH---HHHHHHHCT
T ss_pred EEEEEEcHHHHHHHh--CcccCCEEEecCCCCcCCcccCCHHHHHHHHHHhCCCcEEEEeech---HH---HHHHHHHcC
Confidence 367788998764321 236899999986542 278999999999999998864432 22 445777999
Q ss_pred CeEeEEeeeecCCCCCceEEEEEEe
Q 022962 245 ASLLQLCSVESQSPFGQRTAVVCLK 269 (289)
Q Consensus 245 ~~~~~~~~~~~~~~~~~r~lv~~~k 269 (289)
|.+.+.. ...+.|.++...|
T Consensus 104 F~v~~~~-----g~g~Kr~~~~a~~ 123 (124)
T PF05430_consen 104 FEVEKVP-----GFGRKREMLRAVK 123 (124)
T ss_dssp EEEEEEE------STTSSEEEEEEC
T ss_pred CEEEEcC-----CCCCcchheEEEc
Confidence 9876554 3456677766554
No 300
>COG0270 Dcm Site-specific DNA methylase [DNA replication, recombination, and repair]
Probab=94.49 E-value=0.44 Score=44.17 Aligned_cols=116 Identities=16% Similarity=0.155 Sum_probs=72.3
Q ss_pred CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCcCCC-CceEEEEcC
Q 022962 122 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFRE-QYDVAVARA 200 (289)
Q Consensus 122 ~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~~~~-~fD~V~sn~ 200 (289)
..+++|+-||.|.+.+-+.... ---+.++|+++.+++..+.|... ..++..|+.++.... ... .+|+++...
T Consensus 3 ~~~~idLFsG~GG~~lGf~~ag-f~~~~a~Eid~~a~~ty~~n~~~-----~~~~~~di~~~~~~~-~~~~~~DvligGp 75 (328)
T COG0270 3 KMKVIDLFAGIGGLSLGFEEAG-FEIVFANEIDPPAVATYKANFPH-----GDIILGDIKELDGEA-LRKSDVDVLIGGP 75 (328)
T ss_pred CceEEeeccCCchHHHHHHhcC-CeEEEEEecCHHHHHHHHHhCCC-----CceeechHhhcChhh-ccccCCCEEEeCC
Confidence 4589999999999887776552 23578999999998877775432 456677887765431 122 789999762
Q ss_pred -------------ccc-----HHHHHHHHccccccCeEEEEEEcCC----cHHHHHHHHHHHHHhCCe
Q 022962 201 -------------VAE-----MRILAEYCLPLVRVGGLFVAAKGHD----PQEEVKNSERAVQLMGAS 246 (289)
Q Consensus 201 -------------~~~-----~~~ll~~~~~~LkpgG~l~~~~g~~----~~~ei~~~~~~l~~~g~~ 246 (289)
..+ +-.++ .+...++| -.|+++--.. ....++.+.+.|++.|+.
T Consensus 76 PCQ~FS~aG~r~~~~D~R~~L~~~~~-r~I~~~~P-~~fv~ENV~gl~~~~~~~~~~i~~~L~~~GY~ 141 (328)
T COG0270 76 PCQDFSIAGKRRGYDDPRGSLFLEFI-RLIEQLRP-KFFVLENVKGLLSSKGQTFDEIKKELEELGYG 141 (328)
T ss_pred CCcchhhcCcccCCcCccceeeHHHH-HHHHhhCC-CEEEEecCchHHhcCchHHHHHHHHHHHcCCc
Confidence 111 11122 22234566 4444442111 123567778889999996
No 301
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=94.42 E-value=0.04 Score=43.20 Aligned_cols=86 Identities=19% Similarity=0.186 Sum_probs=56.0
Q ss_pred CCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccC---CCCcCCCCceEEEEcCcccHHHH
Q 022962 131 GAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLG---KDVSFREQYDVAVARAVAEMRIL 207 (289)
Q Consensus 131 G~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~---~~~~~~~~fD~V~sn~~~~~~~l 207 (289)
|.|..++.+|+... .+|+++|.+++..+.+++ +|.+.+ +..+-.++. ........+|+|+-..-. ...
T Consensus 1 ~vG~~a~q~ak~~G-~~vi~~~~~~~k~~~~~~----~Ga~~~--~~~~~~~~~~~i~~~~~~~~~d~vid~~g~--~~~ 71 (130)
T PF00107_consen 1 GVGLMAIQLAKAMG-AKVIATDRSEEKLELAKE----LGADHV--IDYSDDDFVEQIRELTGGRGVDVVIDCVGS--GDT 71 (130)
T ss_dssp HHHHHHHHHHHHTT-SEEEEEESSHHHHHHHHH----TTESEE--EETTTSSHHHHHHHHTTTSSEEEEEESSSS--HHH
T ss_pred ChHHHHHHHHHHcC-CEEEEEECCHHHHHHHHh----hccccc--ccccccccccccccccccccceEEEEecCc--HHH
Confidence 45788889998876 999999999998777655 554322 222111110 000112479999855321 457
Q ss_pred HHHHccccccCeEEEEEE
Q 022962 208 AEYCLPLVRVGGLFVAAK 225 (289)
Q Consensus 208 l~~~~~~LkpgG~l~~~~ 225 (289)
++.+..+|+++|+++++-
T Consensus 72 ~~~~~~~l~~~G~~v~vg 89 (130)
T PF00107_consen 72 LQEAIKLLRPGGRIVVVG 89 (130)
T ss_dssp HHHHHHHEEEEEEEEEES
T ss_pred HHHHHHHhccCCEEEEEE
Confidence 777788999999998764
No 302
>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (
Probab=94.38 E-value=0.27 Score=45.45 Aligned_cols=89 Identities=11% Similarity=0.123 Sum_probs=56.2
Q ss_pred CCCCeEEEEcCCCChHHHH---HHHH-CCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCcCCCCceE
Q 022962 120 NSNLKLVDVGTGAGLPGLV---LAIA-CPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDV 195 (289)
Q Consensus 120 ~~~~~VLDiGcG~G~~~l~---la~~-~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~~~~~fD~ 195 (289)
.++.+||=+||| .+|+. +|+. ....+|+++|.+++.++.+++ .+. .... .++.. ...+|+
T Consensus 162 ~~g~~VlV~G~G--~vGl~~~~~a~~~~g~~~vi~~~~~~~k~~~a~~----~~~--~~~~----~~~~~----~~g~d~ 225 (341)
T cd08237 162 KDRNVIGVWGDG--NLGYITALLLKQIYPESKLVVFGKHQEKLDLFSF----ADE--TYLI----DDIPE----DLAVDH 225 (341)
T ss_pred CCCCEEEEECCC--HHHHHHHHHHHHhcCCCcEEEEeCcHhHHHHHhh----cCc--eeeh----hhhhh----ccCCcE
Confidence 357899999874 45544 3443 456789999999988888764 222 1111 11111 124899
Q ss_pred EEEcCcc-cHHHHHHHHccccccCeEEEEE
Q 022962 196 AVARAVA-EMRILAEYCLPLVRVGGLFVAA 224 (289)
Q Consensus 196 V~sn~~~-~~~~ll~~~~~~LkpgG~l~~~ 224 (289)
|+-..-. .....+..+.++|++||+++++
T Consensus 226 viD~~G~~~~~~~~~~~~~~l~~~G~iv~~ 255 (341)
T cd08237 226 AFECVGGRGSQSAINQIIDYIRPQGTIGLM 255 (341)
T ss_pred EEECCCCCccHHHHHHHHHhCcCCcEEEEE
Confidence 8844321 1345677778899999998864
No 303
>PRK13699 putative methylase; Provisional
Probab=94.27 E-value=0.15 Score=44.84 Aligned_cols=76 Identities=12% Similarity=0.093 Sum_probs=50.0
Q ss_pred EEEeccccccCCCCcCCCCceEEEEcC---c----------------ccHHHHHHHHccccccCeEEEEEEcCCcHHHHH
Q 022962 174 QIVRGRAETLGKDVSFREQYDVAVARA---V----------------AEMRILAEYCLPLVRVGGLFVAAKGHDPQEEVK 234 (289)
Q Consensus 174 ~~~~~d~~~~~~~~~~~~~fD~V~sn~---~----------------~~~~~ll~~~~~~LkpgG~l~~~~g~~~~~ei~ 234 (289)
+++++|..++-.. ..++++|+|++.. + .-...++.+++++|||||.+++..+......+
T Consensus 3 ~l~~gD~le~l~~-lpd~SVDLIiTDPPY~i~~~~~~~~~~~~~~~~ew~~~~l~E~~RVLKpgg~l~if~~~~~~~~~- 80 (227)
T PRK13699 3 RFILGNCIDVMAR-FPDNAVDFILTDPPYLVGFRDRQGRTIAGDKTDEWLQPACNEMYRVLKKDALMVSFYGWNRVDRF- 80 (227)
T ss_pred eEEechHHHHHHh-CCccccceEEeCCCcccccccCCCcccccccHHHHHHHHHHHHHHHcCCCCEEEEEeccccHHHH-
Confidence 5667777654211 1247788888862 0 11357889999999999999876665444433
Q ss_pred HHHHHHHHhCCeEeEEeee
Q 022962 235 NSERAVQLMGASLLQLCSV 253 (289)
Q Consensus 235 ~~~~~l~~~g~~~~~~~~~ 253 (289)
...+++.||.+......
T Consensus 81 --~~al~~~GF~l~~~IiW 97 (227)
T PRK13699 81 --MAAWKNAGFSVVGHLVF 97 (227)
T ss_pred --HHHHHHCCCEEeeEEEE
Confidence 44567899988765533
No 304
>KOG0822 consensus Protein kinase inhibitor [Cell cycle control, cell division, chromosome partitioning]
Probab=94.14 E-value=0.14 Score=49.90 Aligned_cols=97 Identities=16% Similarity=0.137 Sum_probs=72.3
Q ss_pred CCeEEEEcCCCChHHHHH---HHHC-CCCEEEEEeCChHHHHHHHHHHHHcCC-CCEEEEeccccccCCCCcCCCCceEE
Q 022962 122 NLKLVDVGTGAGLPGLVL---AIAC-PDWKVTLLESMNKRCVFLEHAVSLTQL-LNVQIVRGRAETLGKDVSFREQYDVA 196 (289)
Q Consensus 122 ~~~VLDiGcG~G~~~l~l---a~~~-p~~~V~~iD~s~~~l~~a~~~~~~~~l-~ni~~~~~d~~~~~~~~~~~~~fD~V 196 (289)
...|+=+|.|-|-+.-.. |... ...++++||.++.++..++. .+..+- .+|+++.+|+.++..+ .++.|++
T Consensus 368 ~tVimvlGaGRGPLv~~~lkaa~~~~RkVklyavEKNPNAivtL~~-~n~~~W~~~Vtii~~DMR~w~ap---~eq~DI~ 443 (649)
T KOG0822|consen 368 TTVIMVLGAGRGPLVDASLKAAEETDRKVKLYAVEKNPNAIVTLQN-RNFECWDNRVTIISSDMRKWNAP---REQADII 443 (649)
T ss_pred eEEEEEecCCCccHHHHHHHHHHHhcCceEEEEEecCcchhhhhhh-hchhhhcCeeEEEeccccccCCc---hhhccch
Confidence 457889999999876443 3322 35789999999999988877 232333 3599999999998753 3789999
Q ss_pred EEcC---cc---cHHHHHHHHccccccCeEEE
Q 022962 197 VARA---VA---EMRILAEYCLPLVRVGGLFV 222 (289)
Q Consensus 197 ~sn~---~~---~~~~ll~~~~~~LkpgG~l~ 222 (289)
+|-- +. --++-|..+.++|||+|..+
T Consensus 444 VSELLGSFGDNELSPECLDG~q~fLkpdgIsI 475 (649)
T KOG0822|consen 444 VSELLGSFGDNELSPECLDGAQKFLKPDGISI 475 (649)
T ss_pred HHHhhccccCccCCHHHHHHHHhhcCCCceEc
Confidence 9862 22 12678888999999999887
No 305
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=94.10 E-value=0.28 Score=48.21 Aligned_cols=99 Identities=14% Similarity=0.172 Sum_probs=62.2
Q ss_pred CCCeEEEEcCCC-ChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEecc--------ccccCCC-----
Q 022962 121 SNLKLVDVGTGA-GLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGR--------AETLGKD----- 186 (289)
Q Consensus 121 ~~~~VLDiGcG~-G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d--------~~~~~~~----- 186 (289)
++.+|+=+|||. |..++..|+... ++|+++|.+++.++.+++ +|.+.+.+-..+ +.+...+
T Consensus 164 pg~kVlViGaG~iGL~Ai~~Ak~lG-A~V~a~D~~~~rle~aes----lGA~~v~i~~~e~~~~~~gya~~~s~~~~~~~ 238 (509)
T PRK09424 164 PPAKVLVIGAGVAGLAAIGAAGSLG-AIVRAFDTRPEVAEQVES----MGAEFLELDFEEEGGSGDGYAKVMSEEFIKAE 238 (509)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHH----cCCeEEEeccccccccccchhhhcchhHHHHH
Confidence 488999999995 666677777765 589999999988776655 554322211101 0001000
Q ss_pred ----CcCCCCceEEEEcCcc-c--HHHH-HHHHccccccCeEEEEE
Q 022962 187 ----VSFREQYDVAVARAVA-E--MRIL-AEYCLPLVRVGGLFVAA 224 (289)
Q Consensus 187 ----~~~~~~fD~V~sn~~~-~--~~~l-l~~~~~~LkpgG~l~~~ 224 (289)
...-..+|+|+..+.. . -+.+ .+++.+.+||||.++..
T Consensus 239 ~~~~~~~~~gaDVVIetag~pg~~aP~lit~~~v~~mkpGgvIVdv 284 (509)
T PRK09424 239 MALFAEQAKEVDIIITTALIPGKPAPKLITAEMVASMKPGSVIVDL 284 (509)
T ss_pred HHHHHhccCCCCEEEECCCCCcccCcchHHHHHHHhcCCCCEEEEE
Confidence 0001359999976532 1 2344 58999999999998854
No 306
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=94.09 E-value=0.25 Score=45.77 Aligned_cols=93 Identities=16% Similarity=0.202 Sum_probs=55.3
Q ss_pred CCCeEEEEcCCC-ChHHHHHHHHCCCCEEEEEeC---ChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCcCCCCceEE
Q 022962 121 SNLKLVDVGTGA-GLPGLVLAIACPDWKVTLLES---MNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVA 196 (289)
Q Consensus 121 ~~~~VLDiGcG~-G~~~l~la~~~p~~~V~~iD~---s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~~~~~fD~V 196 (289)
++.+||=+|+|+ |.+++.+|+.. +.+|++++. +++..+.++ ++|.+.+.....+..+ . .....||+|
T Consensus 172 ~g~~vlI~G~G~vG~~a~q~ak~~-G~~vi~~~~~~~~~~~~~~~~----~~Ga~~v~~~~~~~~~-~---~~~~~~d~v 242 (355)
T cd08230 172 NPRRALVLGAGPIGLLAALLLRLR-GFEVYVLNRRDPPDPKADIVE----ELGATYVNSSKTPVAE-V---KLVGEFDLI 242 (355)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHc-CCeEEEEecCCCCHHHHHHHH----HcCCEEecCCccchhh-h---hhcCCCCEE
Confidence 478999998753 44445566665 458999997 566665554 4554322111111111 0 012468998
Q ss_pred EEcCcccHHHHHHHHccccccCeEEEEE
Q 022962 197 VARAVAEMRILAEYCLPLVRVGGLFVAA 224 (289)
Q Consensus 197 ~sn~~~~~~~ll~~~~~~LkpgG~l~~~ 224 (289)
+-..-. ...+..+.+.|++||.+++.
T Consensus 243 id~~g~--~~~~~~~~~~l~~~G~~v~~ 268 (355)
T cd08230 243 IEATGV--PPLAFEALPALAPNGVVILF 268 (355)
T ss_pred EECcCC--HHHHHHHHHHccCCcEEEEE
Confidence 865432 23567777899999998764
No 307
>PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1.3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D.
Probab=94.04 E-value=0.92 Score=40.45 Aligned_cols=105 Identities=19% Similarity=0.192 Sum_probs=63.0
Q ss_pred HHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCcCCCCceEEE-EcCcccHHHHHHHHcc
Q 022962 135 PGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAV-ARAVAEMRILAEYCLP 213 (289)
Q Consensus 135 ~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~~~~~fD~V~-sn~~~~~~~ll~~~~~ 213 (289)
+++.|.+..+..+|+|+|.++..++.|.+ .|.-.- ...+.+.+ ..+|+|+ |-.+.....+++++..
T Consensus 1 ~A~aL~~~g~~~~v~g~d~~~~~~~~a~~----~g~~~~--~~~~~~~~-------~~~DlvvlavP~~~~~~~l~~~~~ 67 (258)
T PF02153_consen 1 IALALRKAGPDVEVYGYDRDPETLEAALE----LGIIDE--ASTDIEAV-------EDADLVVLAVPVSAIEDVLEEIAP 67 (258)
T ss_dssp HHHHHHHTTTTSEEEEE-SSHHHHHHHHH----TTSSSE--EESHHHHG-------GCCSEEEE-S-HHHHHHHHHHHHC
T ss_pred ChHHHHhCCCCeEEEEEeCCHHHHHHHHH----CCCeee--ccCCHhHh-------cCCCEEEEcCCHHHHHHHHHHhhh
Confidence 35667777678999999999988766643 454221 11222222 3479988 5577888999999999
Q ss_pred ccccCeEEEEEEcCCcHHHHHHHHHHHHHhCCeEeEEeeee
Q 022962 214 LVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLLQLCSVE 254 (289)
Q Consensus 214 ~LkpgG~l~~~~g~~~~~ei~~~~~~l~~~g~~~~~~~~~~ 254 (289)
.+++|+.+.=. +.-...-+..+.+.+. .+...+...++-
T Consensus 68 ~~~~~~iv~Dv-~SvK~~~~~~~~~~~~-~~~~~v~~HPM~ 106 (258)
T PF02153_consen 68 YLKPGAIVTDV-GSVKAPIVEAMERLLP-EGVRFVGGHPMA 106 (258)
T ss_dssp GS-TTSEEEE---S-CHHHHHHHHHHHT-SSGEEEEEEESC
T ss_pred hcCCCcEEEEe-CCCCHHHHHHHHHhcC-cccceeecCCCC
Confidence 99998877643 3333333343333333 466777776653
No 308
>PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) [].; GO: 0008168 methyltransferase activity
Probab=93.91 E-value=0.045 Score=42.17 Aligned_cols=31 Identities=23% Similarity=0.279 Sum_probs=24.6
Q ss_pred CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCC
Q 022962 122 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESM 154 (289)
Q Consensus 122 ~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s 154 (289)
....+|||||.|.+.-.|... +..-.|+|.-
T Consensus 59 ~~~FVDlGCGNGLLV~IL~~E--Gy~G~GiD~R 89 (112)
T PF07757_consen 59 FQGFVDLGCGNGLLVYILNSE--GYPGWGIDAR 89 (112)
T ss_pred CCceEEccCCchHHHHHHHhC--CCCccccccc
Confidence 457899999999987777654 5677899974
No 309
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=93.84 E-value=0.25 Score=45.89 Aligned_cols=99 Identities=9% Similarity=0.007 Sum_probs=56.8
Q ss_pred CCCCCeEEEEcCCC-ChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCE-EEEeccccc-cCCCCcCCCCceE
Q 022962 119 CNSNLKLVDVGTGA-GLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNV-QIVRGRAET-LGKDVSFREQYDV 195 (289)
Q Consensus 119 ~~~~~~VLDiGcG~-G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni-~~~~~d~~~-~~~~~~~~~~fD~ 195 (289)
+.++.+||=.|||+ |..++.+|+.....+|+++|.+++..+.+++ +|.+.+ .....+..+ +... .....+|+
T Consensus 174 ~~~g~~VlV~G~g~vG~~a~~~ak~~G~~~Vi~~~~~~~~~~~~~~----~Ga~~~i~~~~~~~~~~i~~~-~~~~g~d~ 248 (358)
T TIGR03451 174 VKRGDSVAVIGCGGVGDAAIAGAALAGASKIIAVDIDDRKLEWARE----FGATHTVNSSGTDPVEAIRAL-TGGFGADV 248 (358)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH----cCCceEEcCCCcCHHHHHHHH-hCCCCCCE
Confidence 44688999888642 3334456666543369999999988777754 554321 111111111 1000 01235899
Q ss_pred EEEcCcccHHHHHHHHccccccCeEEEEE
Q 022962 196 AVARAVAEMRILAEYCLPLVRVGGLFVAA 224 (289)
Q Consensus 196 V~sn~~~~~~~ll~~~~~~LkpgG~l~~~ 224 (289)
|+-..-. ...+..+.+.+++||++++.
T Consensus 249 vid~~g~--~~~~~~~~~~~~~~G~iv~~ 275 (358)
T TIGR03451 249 VIDAVGR--PETYKQAFYARDLAGTVVLV 275 (358)
T ss_pred EEECCCC--HHHHHHHHHHhccCCEEEEE
Confidence 8854321 23455667789999998864
No 310
>PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3). Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B.
Probab=93.77 E-value=0.042 Score=42.46 Aligned_cols=34 Identities=26% Similarity=0.494 Sum_probs=28.0
Q ss_pred CceEEEEcCc----------ccHHHHHHHHccccccCeEEEEEE
Q 022962 192 QYDVAVARAV----------AEMRILAEYCLPLVRVGGLFVAAK 225 (289)
Q Consensus 192 ~fD~V~sn~~----------~~~~~ll~~~~~~LkpgG~l~~~~ 225 (289)
+||+|+|-++ +.+..+++.++..|+|||.|+++-
T Consensus 1 ~yDvilclSVtkWIHLn~GD~Gl~~~f~~~~~~L~pGG~lilEp 44 (110)
T PF06859_consen 1 QYDVILCLSVTKWIHLNWGDEGLKRFFRRIYSLLRPGGILILEP 44 (110)
T ss_dssp -EEEEEEES-HHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEE-
T ss_pred CccEEEEEEeeEEEEecCcCHHHHHHHHHHHHhhCCCCEEEEeC
Confidence 4899999753 357899999999999999999874
No 311
>KOG2651 consensus rRNA adenine N-6-methyltransferase [RNA processing and modification]
Probab=93.60 E-value=0.15 Score=47.69 Aligned_cols=44 Identities=20% Similarity=0.262 Sum_probs=36.8
Q ss_pred CCCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHH
Q 022962 120 NSNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHA 164 (289)
Q Consensus 120 ~~~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~ 164 (289)
.+-..|+|+|.|-|.++-.++..+ +..|.|||-|....+.|+..
T Consensus 152 ~gi~~vvD~GaG~G~LSr~lSl~y-~lsV~aIegsq~~~~ra~rL 195 (476)
T KOG2651|consen 152 TGIDQVVDVGAGQGHLSRFLSLGY-GLSVKAIEGSQRLVERAQRL 195 (476)
T ss_pred cCCCeeEEcCCCchHHHHHHhhcc-CceEEEeccchHHHHHHHHH
Confidence 345689999999999999999776 68999999998777766653
No 312
>PRK11524 putative methyltransferase; Provisional
Probab=93.60 E-value=0.16 Score=46.12 Aligned_cols=75 Identities=13% Similarity=0.033 Sum_probs=50.0
Q ss_pred CEEEEeccccccCCCCcCCCCceEEEEcCc--------------------ccHHHHHHHHccccccCeEEEEEEcCCcHH
Q 022962 172 NVQIVRGRAETLGKDVSFREQYDVAVARAV--------------------AEMRILAEYCLPLVRVGGLFVAAKGHDPQE 231 (289)
Q Consensus 172 ni~~~~~d~~~~~~~~~~~~~fD~V~sn~~--------------------~~~~~ll~~~~~~LkpgG~l~~~~g~~~~~ 231 (289)
+.+++++|..++... ..+++||+|+++.. ..+..++.++.++|||||.+++..+.....
T Consensus 8 ~~~i~~gD~~~~l~~-l~~~siDlIitDPPY~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~rvLK~~G~i~i~~~~~~~~ 86 (284)
T PRK11524 8 AKTIIHGDALTELKK-IPSESVDLIFADPPYNIGKNFDGLIEAWKEDLFIDWLYEWIDECHRVLKKQGTMYIMNSTENMP 86 (284)
T ss_pred CCEEEeccHHHHHHh-cccCcccEEEECCCcccccccccccccccHHHHHHHHHHHHHHHHHHhCCCcEEEEEcCchhhh
Confidence 467889998885321 12478999999831 012578899999999999999876554433
Q ss_pred HHHHHHHHHHHhCCeEeEEe
Q 022962 232 EVKNSERAVQLMGASLLQLC 251 (289)
Q Consensus 232 ei~~~~~~l~~~g~~~~~~~ 251 (289)
.+ ..+...||......
T Consensus 87 ~~----~~~~~~~f~~~~~i 102 (284)
T PRK11524 87 FI----DLYCRKLFTIKSRI 102 (284)
T ss_pred HH----HHHHhcCcceEEEE
Confidence 32 23345677666543
No 313
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=93.48 E-value=0.15 Score=43.55 Aligned_cols=42 Identities=14% Similarity=0.153 Sum_probs=31.5
Q ss_pred CCCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHH
Q 022962 120 NSNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEH 163 (289)
Q Consensus 120 ~~~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~ 163 (289)
++++.|||-=||||.-+++..+. +-+.+|+|++++.++.|++
T Consensus 190 ~~gdiVlDpF~GSGTT~~aa~~l--~R~~ig~E~~~~y~~~a~~ 231 (231)
T PF01555_consen 190 NPGDIVLDPFAGSGTTAVAAEEL--GRRYIGIEIDEEYCEIAKK 231 (231)
T ss_dssp -TT-EEEETT-TTTHHHHHHHHT--T-EEEEEESSHHHHHHHHH
T ss_pred ccceeeehhhhccChHHHHHHHc--CCeEEEEeCCHHHHHHhcC
Confidence 35889999999999876664433 6689999999999998864
No 314
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=93.42 E-value=0.081 Score=50.95 Aligned_cols=105 Identities=15% Similarity=0.109 Sum_probs=72.4
Q ss_pred CCCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccc----cCCCCcCCCCceE
Q 022962 120 NSNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAET----LGKDVSFREQYDV 195 (289)
Q Consensus 120 ~~~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~----~~~~~~~~~~fD~ 195 (289)
+.+..+|-+|=|+|.+...+...+|...+++|++++.+++.|+.+.....-.+..++..|-.+ ......-+..||+
T Consensus 294 ~~~~~~lvvg~ggG~l~sfl~~~~p~~~i~~ve~dP~~l~va~q~f~f~q~~r~~V~i~dGl~~~~~~~k~~~~~~~~dv 373 (482)
T KOG2352|consen 294 DTGGKQLVVGLGGGGLPSFLHMSLPKFQITAVEIDPEMLEVATQYFGFMQSDRNKVHIADGLDFLQRTAKSQQEDICPDV 373 (482)
T ss_pred cccCcEEEEecCCCccccceeeecCccceeEEEEChhHhhccHhhhchhhhhhhhhhHhhchHHHHHHhhccccccCCcE
Confidence 346789999999999998888888999999999999999999886543332222333233222 1111112357999
Q ss_pred EEEc--C----------ccc-HHHHHHHHccccccCeEEEEE
Q 022962 196 AVAR--A----------VAE-MRILAEYCLPLVRVGGLFVAA 224 (289)
Q Consensus 196 V~sn--~----------~~~-~~~ll~~~~~~LkpgG~l~~~ 224 (289)
++.. + .+. -..++..+...|.|.|.|++-
T Consensus 374 l~~dvds~d~~g~~~pp~~fva~~~l~~~k~~l~p~g~f~in 415 (482)
T KOG2352|consen 374 LMVDVDSKDSHGMQCPPPAFVAQVALQPVKMILPPRGMFIIN 415 (482)
T ss_pred EEEECCCCCcccCcCCchHHHHHHHHHHHhhccCccceEEEE
Confidence 9975 1 111 257778889999999999763
No 315
>PF05711 TylF: Macrocin-O-methyltransferase (TylF); InterPro: IPR008884 This family consists of bacterial macrocin O-methyltransferase (TylF) proteins. TylF is responsible for the methylation of macrocin to produce tylosin. Tylosin is a macrolide antibiotic used in veterinary medicine to treat infections caused by Gram-positive bacteria and as an animal growth promoter in the Sus scrofa (Pig) industry. It is produced by several Streptomyces species. As with other macrolides, the antibiotic activity of tylosin is due to the inhibition of protein biosynthesis by a mechanism that involves the binding of tylosin to the ribosome, preventing the formation of the mRNA-aminoacyl-tRNA-ribosome complex [].; PDB: 3TOS_D 2WK1_A.
Probab=93.00 E-value=1.2 Score=39.68 Aligned_cols=128 Identities=16% Similarity=0.186 Sum_probs=69.1
Q ss_pred CCeEEEEcCCCChHHHHHHHH---C--CCCEEEEEeCCh--------------------------HHHHHHHHHHHHcCC
Q 022962 122 NLKLVDVGTGAGLPGLVLAIA---C--PDWKVTLLESMN--------------------------KRCVFLEHAVSLTQL 170 (289)
Q Consensus 122 ~~~VLDiGcG~G~~~l~la~~---~--p~~~V~~iD~s~--------------------------~~l~~a~~~~~~~~l 170 (289)
.+.|+++||=-|..++.++.. + ++.+|++.|.=+ ..++..+++....|+
T Consensus 75 pGdivE~GV~rGgs~~~~~~~l~~~~~~~R~i~lfDSFeG~P~~~~~d~~~d~~~~~~~~~~~~~~s~e~V~~n~~~~gl 154 (248)
T PF05711_consen 75 PGDIVECGVWRGGSSILMRAVLEAYGNPDRRIYLFDSFEGFPEPDEEDYPADKGWEFHEYNGYLAVSLEEVRENFARYGL 154 (248)
T ss_dssp -SEEEEE--TTSHHHHHHHHHHHCTTTTS--EEEEE-SSSSSS--CCCTCCCCHCTCCGCCHHCTHHHHHHHHCCCCTTT
T ss_pred CeEEEEEeeCCCHHHHHHHHHHHHhCCCCCEEEEEeCCCCCCCCccccccccchhhhhhcccccccCHHHHHHHHHHcCC
Confidence 468999999999877665432 2 456799998421 123344444444554
Q ss_pred --CCEEEEeccccccCCCCcCCCCceEEEEc--CcccHHHHHHHHccccccCeEEEEEEcCCcHHHHHH-HHHHHHHhCC
Q 022962 171 --LNVQIVRGRAETLGKDVSFREQYDVAVAR--AVAEMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKN-SERAVQLMGA 245 (289)
Q Consensus 171 --~ni~~~~~d~~~~~~~~~~~~~fD~V~sn--~~~~~~~ll~~~~~~LkpgG~l~~~~g~~~~~ei~~-~~~~l~~~g~ 245 (289)
++++++.|...+.-.. ...+++-++... -..+....|+.++..|.|||.+++ ..... +.... +.+...+.|.
T Consensus 155 ~~~~v~~vkG~F~dTLp~-~p~~~IAll~lD~DlYesT~~aLe~lyprl~~GGiIi~-DDY~~-~gcr~AvdeF~~~~gi 231 (248)
T PF05711_consen 155 LDDNVRFVKGWFPDTLPD-APIERIALLHLDCDLYESTKDALEFLYPRLSPGGIIIF-DDYGH-PGCRKAVDEFRAEHGI 231 (248)
T ss_dssp SSTTEEEEES-HHHHCCC--TT--EEEEEE---SHHHHHHHHHHHGGGEEEEEEEEE-SSTTT-HHHHHHHHHHHHHTT-
T ss_pred CcccEEEECCcchhhhcc-CCCccEEEEEEeccchHHHHHHHHHHHhhcCCCeEEEE-eCCCC-hHHHHHHHHHHHHcCC
Confidence 4799999998764322 112344444433 245678899999999999999886 33333 33332 3334456676
Q ss_pred eEeEEeee
Q 022962 246 SLLQLCSV 253 (289)
Q Consensus 246 ~~~~~~~~ 253 (289)
.. .+..+
T Consensus 232 ~~-~l~~i 238 (248)
T PF05711_consen 232 TD-PLHPI 238 (248)
T ss_dssp -S---EE-
T ss_pred CC-ccEEe
Confidence 42 34433
No 316
>PRK11524 putative methyltransferase; Provisional
Probab=92.91 E-value=0.25 Score=44.71 Aligned_cols=46 Identities=15% Similarity=0.034 Sum_probs=37.9
Q ss_pred CCCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHH
Q 022962 120 NSNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSL 167 (289)
Q Consensus 120 ~~~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~ 167 (289)
.+|+.|||--||||.-+++..+. +-+.+|+|++++.++.|++.++.
T Consensus 207 ~~GD~VLDPF~GSGTT~~AA~~l--gR~~IG~Ei~~~Y~~~a~~Rl~~ 252 (284)
T PRK11524 207 NPGDIVLDPFAGSFTTGAVAKAS--GRKFIGIEINSEYIKMGLRRLDV 252 (284)
T ss_pred CCCCEEEECCCCCcHHHHHHHHc--CCCEEEEeCCHHHHHHHHHHHHh
Confidence 45899999999999876654433 67999999999999999997653
No 317
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=92.53 E-value=1.2 Score=36.68 Aligned_cols=110 Identities=15% Similarity=0.168 Sum_probs=67.8
Q ss_pred EEEEcCCCChHHHHHHHHC--CCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCcCCCCceEEEEcC--
Q 022962 125 LVDVGTGAGLPGLVLAIAC--PDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARA-- 200 (289)
Q Consensus 125 VLDiGcG~G~~~l~la~~~--p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~~~~~fD~V~sn~-- 200 (289)
|-=||+ |..|..+|+.. .+.+|++.|.+++.++.+.+. + ++. ..+..++. +..|+|++.-
T Consensus 4 Ig~IGl--G~mG~~~a~~L~~~g~~v~~~d~~~~~~~~~~~~----g---~~~-~~s~~e~~------~~~dvvi~~v~~ 67 (163)
T PF03446_consen 4 IGFIGL--GNMGSAMARNLAKAGYEVTVYDRSPEKAEALAEA----G---AEV-ADSPAEAA------EQADVVILCVPD 67 (163)
T ss_dssp EEEE----SHHHHHHHHHHHHTTTEEEEEESSHHHHHHHHHT----T---EEE-ESSHHHHH------HHBSEEEE-SSS
T ss_pred EEEEch--HHHHHHHHHHHHhcCCeEEeeccchhhhhhhHHh----h---hhh-hhhhhhHh------hcccceEeeccc
Confidence 444565 57777777653 468999999998776555441 2 433 33444432 3469998763
Q ss_pred cccHHHHHHH--HccccccCeEEEEEEcCCcHHHHHHHHHHHHHhCCeEeEEe
Q 022962 201 VAEMRILAEY--CLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLLQLC 251 (289)
Q Consensus 201 ~~~~~~ll~~--~~~~LkpgG~l~~~~g~~~~~ei~~~~~~l~~~g~~~~~~~ 251 (289)
....+.++.. +...|++|..++ ..+....++..++.+.+...|...++..
T Consensus 68 ~~~v~~v~~~~~i~~~l~~g~iii-d~sT~~p~~~~~~~~~~~~~g~~~vdap 119 (163)
T PF03446_consen 68 DDAVEAVLFGENILAGLRPGKIII-DMSTISPETSRELAERLAAKGVRYVDAP 119 (163)
T ss_dssp HHHHHHHHHCTTHGGGS-TTEEEE-E-SS--HHHHHHHHHHHHHTTEEEEEEE
T ss_pred chhhhhhhhhhHHhhccccceEEE-ecCCcchhhhhhhhhhhhhccceeeeee
Confidence 3456777777 777787776665 4555555666777788888998777664
No 318
>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.
Probab=92.46 E-value=1.2 Score=40.93 Aligned_cols=89 Identities=19% Similarity=0.057 Sum_probs=54.9
Q ss_pred CCCCeEEEEcCC-CChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCcCCCCceEEEE
Q 022962 120 NSNLKLVDVGTG-AGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVA 198 (289)
Q Consensus 120 ~~~~~VLDiGcG-~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~~~~~fD~V~s 198 (289)
+++.+||=.|+| .|..++.+|+.. +.+|+++|.+++..+.+++ +|.+.+ +. ..+.. .+.+|+++-
T Consensus 164 ~~g~~VlV~G~g~iG~~a~~~a~~~-G~~vi~~~~~~~~~~~a~~----~Ga~~v--i~--~~~~~-----~~~~d~~i~ 229 (329)
T TIGR02822 164 PPGGRLGLYGFGGSAHLTAQVALAQ-GATVHVMTRGAAARRLALA----LGAASA--GG--AYDTP-----PEPLDAAIL 229 (329)
T ss_pred CCCCEEEEEcCCHHHHHHHHHHHHC-CCeEEEEeCChHHHHHHHH----hCCcee--cc--ccccC-----cccceEEEE
Confidence 458899999974 222334456554 5689999999987665544 665422 11 11111 135787664
Q ss_pred cCcccHHHHHHHHccccccCeEEEEE
Q 022962 199 RAVAEMRILAEYCLPLVRVGGLFVAA 224 (289)
Q Consensus 199 n~~~~~~~ll~~~~~~LkpgG~l~~~ 224 (289)
.... ...+..+.+.|++||++++.
T Consensus 230 ~~~~--~~~~~~~~~~l~~~G~~v~~ 253 (329)
T TIGR02822 230 FAPA--GGLVPPALEALDRGGVLAVA 253 (329)
T ss_pred CCCc--HHHHHHHHHhhCCCcEEEEE
Confidence 3211 24677778899999999764
No 319
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=92.37 E-value=0.38 Score=41.85 Aligned_cols=97 Identities=20% Similarity=0.227 Sum_probs=58.5
Q ss_pred CCCCeEEEEcCCC-ChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCC--CcCCCCceEE
Q 022962 120 NSNLKLVDVGTGA-GLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKD--VSFREQYDVA 196 (289)
Q Consensus 120 ~~~~~VLDiGcG~-G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~--~~~~~~fD~V 196 (289)
.++.+||..|+|+ |...+.+++.. +.+|++++.+++..+.++. .+...+ +...-.+.... ....+.+|+|
T Consensus 133 ~~~~~vli~g~~~~G~~~~~~a~~~-g~~v~~~~~~~~~~~~~~~----~g~~~~--~~~~~~~~~~~~~~~~~~~~d~v 205 (271)
T cd05188 133 KPGDTVLVLGAGGVGLLAAQLAKAA-GARVIVTDRSDEKLELAKE----LGADHV--IDYKEEDLEEELRLTGGGGADVV 205 (271)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHc-CCeEEEEcCCHHHHHHHHH----hCCcee--ccCCcCCHHHHHHHhcCCCCCEE
Confidence 3578999999986 44555566554 4899999999887766643 333221 11110000000 0012579999
Q ss_pred EEcCcccHHHHHHHHccccccCeEEEEEE
Q 022962 197 VARAVAEMRILAEYCLPLVRVGGLFVAAK 225 (289)
Q Consensus 197 ~sn~~~~~~~ll~~~~~~LkpgG~l~~~~ 225 (289)
+.+.-. ...+..+.+.|+++|.++...
T Consensus 206 i~~~~~--~~~~~~~~~~l~~~G~~v~~~ 232 (271)
T cd05188 206 IDAVGG--PETLAQALRLLRPGGRIVVVG 232 (271)
T ss_pred EECCCC--HHHHHHHHHhcccCCEEEEEc
Confidence 976432 134566677889999998654
No 320
>PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function.; PDB: 4F3N_A 1ZKD_B.
Probab=92.28 E-value=0.31 Score=43.28 Aligned_cols=46 Identities=15% Similarity=0.128 Sum_probs=33.8
Q ss_pred CCeEEEEcCCCChHHHHHHHHCC--------CCEEEEEeCChHHHHHHHHHHHH
Q 022962 122 NLKLVDVGTGAGLPGLVLAIACP--------DWKVTLLESMNKRCVFLEHAVSL 167 (289)
Q Consensus 122 ~~~VLDiGcG~G~~~l~la~~~p--------~~~V~~iD~s~~~l~~a~~~~~~ 167 (289)
..+|+++|.|+|.++..+..... ..+++.||+|+.+.+.-++....
T Consensus 19 ~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~~~y~ivE~Sp~L~~~Q~~~L~~ 72 (252)
T PF02636_consen 19 PLRIVEIGAGRGTLARDILRYLRKFSPEVYKRLRYHIVEISPYLRERQKERLSE 72 (252)
T ss_dssp -EEEEEES-TTSHHHHHHHHHHCCTTHHHHTTCEEEEE-TTCCCHHHHHHHCCC
T ss_pred CcEEEEECCCchHHHHHHHHHHHHhChhhhhcceEEEEcCCHHHHHHHHHHhhh
Confidence 36899999999999988776432 36899999999887766665543
No 321
>PRK13699 putative methylase; Provisional
Probab=91.99 E-value=0.44 Score=41.80 Aligned_cols=48 Identities=13% Similarity=0.089 Sum_probs=38.8
Q ss_pred CCCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcC
Q 022962 120 NSNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQ 169 (289)
Q Consensus 120 ~~~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~ 169 (289)
.+|+.|||-=||||.-++...+. +.+.+|+|++++..+.+.+.++...
T Consensus 162 ~~g~~vlDpf~Gsgtt~~aa~~~--~r~~~g~e~~~~y~~~~~~r~~~~~ 209 (227)
T PRK13699 162 HPNAIVLDPFAGSGSTCVAALQS--GRRYIGIELLEQYHRAGQQRLAAVQ 209 (227)
T ss_pred CCCCEEEeCCCCCCHHHHHHHHc--CCCEEEEecCHHHHHHHHHHHHHHH
Confidence 35889999999999876664433 6789999999999999988776643
No 322
>COG2933 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=91.68 E-value=0.4 Score=42.89 Aligned_cols=89 Identities=17% Similarity=0.100 Sum_probs=64.8
Q ss_pred CCCCCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCcCCCCceEEE
Q 022962 118 SCNSNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAV 197 (289)
Q Consensus 118 ~~~~~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~~~~~fD~V~ 197 (289)
.+.++....|+|+-.|.++-.|-+. +..|++||--+ | .++.-.. ..|+....|-..+.+. ....|-.+
T Consensus 208 rL~~~M~avDLGAcPGGWTyqLVkr--~m~V~aVDng~-m----a~sL~dt--g~v~h~r~DGfk~~P~---r~~idWmV 275 (358)
T COG2933 208 RLAPGMWAVDLGACPGGWTYQLVKR--NMRVYAVDNGP-M----AQSLMDT--GQVTHLREDGFKFRPT---RSNIDWMV 275 (358)
T ss_pred hhcCCceeeecccCCCccchhhhhc--ceEEEEeccch-h----hhhhhcc--cceeeeeccCcccccC---CCCCceEE
Confidence 4567899999999999999888765 78999999643 2 1111122 2577777777766542 36799999
Q ss_pred EcCcccHHHHHHHHccccccC
Q 022962 198 ARAVAEMRILAEYCLPLVRVG 218 (289)
Q Consensus 198 sn~~~~~~~ll~~~~~~Lkpg 218 (289)
|..+..+..+...+..+|..|
T Consensus 276 CDmVEkP~rv~~li~~Wl~nG 296 (358)
T COG2933 276 CDMVEKPARVAALIAKWLVNG 296 (358)
T ss_pred eehhcCcHHHHHHHHHHHHcc
Confidence 998888777777777777644
No 323
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=91.64 E-value=2.8 Score=31.96 Aligned_cols=105 Identities=18% Similarity=0.141 Sum_probs=60.9
Q ss_pred CCCChHHHHHHHHC--CCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCC-cCCCCceEEEEcCccc-HH
Q 022962 130 TGAGLPGLVLAIAC--PDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDV-SFREQYDVAVARAVAE-MR 205 (289)
Q Consensus 130 cG~G~~~l~la~~~--p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~-~~~~~fD~V~sn~~~~-~~ 205 (289)
||.|..|..+++.. .+.+|+.+|.+++.++.+++ . .+.++.+|..+...-. ..-+..|.|++..-.+ ..
T Consensus 4 ~G~g~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~----~---~~~~i~gd~~~~~~l~~a~i~~a~~vv~~~~~d~~n 76 (116)
T PF02254_consen 4 IGYGRIGREIAEQLKEGGIDVVVIDRDPERVEELRE----E---GVEVIYGDATDPEVLERAGIEKADAVVILTDDDEEN 76 (116)
T ss_dssp ES-SHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHH----T---TSEEEES-TTSHHHHHHTTGGCESEEEEESSSHHHH
T ss_pred EcCCHHHHHHHHHHHhCCCEEEEEECCcHHHHHHHh----c---ccccccccchhhhHHhhcCccccCEEEEccCCHHHH
Confidence 67778888887653 33589999999988766654 2 3678889988642110 0114688888764332 22
Q ss_pred HHHHHHccccccCeEEEEEEcCCcHHHHHHHHHHHHHhCCeE
Q 022962 206 ILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASL 247 (289)
Q Consensus 206 ~ll~~~~~~LkpgG~l~~~~g~~~~~ei~~~~~~l~~~g~~~ 247 (289)
..+-...+-+.|...++..... . +. .+.++..|...
T Consensus 77 ~~~~~~~r~~~~~~~ii~~~~~-~-~~----~~~l~~~g~d~ 112 (116)
T PF02254_consen 77 LLIALLARELNPDIRIIARVND-P-EN----AELLRQAGADH 112 (116)
T ss_dssp HHHHHHHHHHTTTSEEEEEESS-H-HH----HHHHHHTT-SE
T ss_pred HHHHHHHHHHCCCCeEEEEECC-H-HH----HHHHHHCCcCE
Confidence 3333444556677887765533 1 11 22445677653
No 324
>PF05050 Methyltransf_21: Methyltransferase FkbM domain; InterPro: IPR007744 This entry contains proteins of unknown function.; PDB: 2PY6_A.
Probab=91.60 E-value=0.42 Score=38.66 Aligned_cols=54 Identities=19% Similarity=0.167 Sum_probs=30.7
Q ss_pred EEcCCCChHHHHH--H--HHCCCCEEEEEeCChHHHHHHHHH--HHHcCCC-CEEEEeccc
Q 022962 127 DVGTGAGLPGLVL--A--IACPDWKVTLLESMNKRCVFLEHA--VSLTQLL-NVQIVRGRA 180 (289)
Q Consensus 127 DiGcG~G~~~l~l--a--~~~p~~~V~~iD~s~~~l~~a~~~--~~~~~l~-ni~~~~~d~ 180 (289)
|||+..|.++... + ...+..+|+++|+++..++.++.+ +.-+... .++++....
T Consensus 1 DvGA~~G~~~~~~~~~~~~~~~~~~v~~~Ep~p~~~~~l~~~~~~~l~~~~~~~~~~~~~~ 61 (167)
T PF05050_consen 1 DVGANIGFWSSTVYFLEKKCGPGGRVHAFEPNPSNFEKLKRNLNLALNDKDGEVEFHPYAV 61 (167)
T ss_dssp EES-TTS--HHHHHHHHHHTS--SEEEEE---HHHHHHHHHH--HHHTTTSTTGGEEEE-S
T ss_pred CcccCCChhHHHHHHHHHHcCCCCEEEEEECCHHHHHHHhHHHHHHhcCCCceEEEEEeec
Confidence 8999999444333 2 345789999999999999999998 5544321 255555443
No 325
>cd05278 FDH_like Formaldehyde dehydrogenases. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typicall
Probab=91.34 E-value=0.83 Score=41.76 Aligned_cols=99 Identities=14% Similarity=0.122 Sum_probs=56.8
Q ss_pred CCCCCeEEEEcCC-CChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCE-EEEeccccc-cCCCCcCCCCceE
Q 022962 119 CNSNLKLVDVGTG-AGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNV-QIVRGRAET-LGKDVSFREQYDV 195 (289)
Q Consensus 119 ~~~~~~VLDiGcG-~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni-~~~~~d~~~-~~~~~~~~~~fD~ 195 (289)
.+++.+||-.|+| .|..++.+|+......|++++.++...+.+++ ++.+.+ .....+..+ +... ...+.+|+
T Consensus 165 ~~~~~~VlI~g~g~vg~~~iqlak~~g~~~v~~~~~~~~~~~~~~~----~g~~~vi~~~~~~~~~~i~~~-~~~~~~d~ 239 (347)
T cd05278 165 IKPGSTVAVIGAGPVGLCAVAGARLLGAARIIAVDSNPERLDLAKE----AGATDIINPKNGDIVEQILEL-TGGRGVDC 239 (347)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHH----hCCcEEEcCCcchHHHHHHHH-cCCCCCcE
Confidence 3457889987764 25555667776643489999988877666554 343221 111111111 1000 01246999
Q ss_pred EEEcCcccHHHHHHHHccccccCeEEEEE
Q 022962 196 AVARAVAEMRILAEYCLPLVRVGGLFVAA 224 (289)
Q Consensus 196 V~sn~~~~~~~ll~~~~~~LkpgG~l~~~ 224 (289)
|+...-. ...+..+.+.|+++|+++..
T Consensus 240 vld~~g~--~~~~~~~~~~l~~~G~~v~~ 266 (347)
T cd05278 240 VIEAVGF--EETFEQAVKVVRPGGTIANV 266 (347)
T ss_pred EEEccCC--HHHHHHHHHHhhcCCEEEEE
Confidence 8854221 24677777889999998753
No 326
>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=91.26 E-value=3.4 Score=35.42 Aligned_cols=101 Identities=14% Similarity=0.083 Sum_probs=63.7
Q ss_pred CCeEEEEcCCCChHHHHHHHHC--CCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCC-------cCCCC
Q 022962 122 NLKLVDVGTGAGLPGLVLAIAC--PDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDV-------SFREQ 192 (289)
Q Consensus 122 ~~~VLDiGcG~G~~~l~la~~~--p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~-------~~~~~ 192 (289)
+.+||=.|++ |.+|..+++.+ .+.+|++++.+++....+.+..... .++.++.+|+.+..... ..-+.
T Consensus 5 ~~~vlItGa~-g~iG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~ 81 (238)
T PRK05786 5 GKKVAIIGVS-EGLGYAVAYFALKEGAQVCINSRNENKLKRMKKTLSKY--GNIHYVVGDVSSTESARNVIEKAAKVLNA 81 (238)
T ss_pred CcEEEEECCC-chHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc--CCeEEEECCCCCHHHHHHHHHHHHHHhCC
Confidence 6789999996 55677777653 4679999999988766554433332 26888888887532110 00134
Q ss_pred ceEEEEcCcc---------------------cHHHHHHHHccccccCeEEEEEE
Q 022962 193 YDVAVARAVA---------------------EMRILAEYCLPLVRVGGLFVAAK 225 (289)
Q Consensus 193 fD~V~sn~~~---------------------~~~~ll~~~~~~LkpgG~l~~~~ 225 (289)
.|.++.++-. ..-.+++.+.+.++++|.+++..
T Consensus 82 id~ii~~ag~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~iv~~s 135 (238)
T PRK05786 82 IDGLVVTVGGYVEDTVEEFSGLEEMLTNHIKIPLYAVNASLRFLKEGSSIVLVS 135 (238)
T ss_pred CCEEEEcCCCcCCCchHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCEEEEEe
Confidence 6888876411 01233555566677888887654
No 327
>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd
Probab=91.20 E-value=0.74 Score=42.98 Aligned_cols=98 Identities=19% Similarity=0.153 Sum_probs=55.6
Q ss_pred CCCCCeEEEEcCCC-ChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCC--CcCCCCceE
Q 022962 119 CNSNLKLVDVGTGA-GLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKD--VSFREQYDV 195 (289)
Q Consensus 119 ~~~~~~VLDiGcG~-G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~--~~~~~~fD~ 195 (289)
+.++.+||=.|+|. |..++.+|+.....+|+++|.+++..+.+++ +|.+. ++..+-+++... ....+.+|+
T Consensus 189 i~~g~~VlV~G~G~vG~~a~~lak~~G~~~Vi~~~~~~~r~~~a~~----~Ga~~--~i~~~~~~~~~~i~~~~~~g~d~ 262 (371)
T cd08281 189 VRPGQSVAVVGLGGVGLSALLGAVAAGASQVVAVDLNEDKLALARE----LGATA--TVNAGDPNAVEQVRELTGGGVDY 262 (371)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHHHH----cCCce--EeCCCchhHHHHHHHHhCCCCCE
Confidence 34577888888642 2233445555533379999999988777754 55532 221111111000 001136899
Q ss_pred EEEcCcccHHHHHHHHccccccCeEEEEE
Q 022962 196 AVARAVAEMRILAEYCLPLVRVGGLFVAA 224 (289)
Q Consensus 196 V~sn~~~~~~~ll~~~~~~LkpgG~l~~~ 224 (289)
|+-..-. ...+..+.+.|+++|+++..
T Consensus 263 vid~~G~--~~~~~~~~~~l~~~G~iv~~ 289 (371)
T cd08281 263 AFEMAGS--VPALETAYEITRRGGTTVTA 289 (371)
T ss_pred EEECCCC--hHHHHHHHHHHhcCCEEEEE
Confidence 9854321 23556667789999998864
No 328
>cd08232 idonate-5-DH L-idonate 5-dehydrogenase. L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai
Probab=90.96 E-value=1.7 Score=39.58 Aligned_cols=93 Identities=15% Similarity=0.129 Sum_probs=57.1
Q ss_pred CCCeEEEEcCCC-ChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEecc---ccccCCCCcCCCCceEE
Q 022962 121 SNLKLVDVGTGA-GLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGR---AETLGKDVSFREQYDVA 196 (289)
Q Consensus 121 ~~~~VLDiGcG~-G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d---~~~~~~~~~~~~~fD~V 196 (289)
++.+||-.|||. |..++.+|+.....+|++++.++...+.+++ ++.+. ++..+ +..+.. ..+.+|+|
T Consensus 165 ~~~~VLI~g~g~vG~~~~~lak~~G~~~v~~~~~s~~~~~~~~~----~g~~~--vi~~~~~~~~~~~~---~~~~vd~v 235 (339)
T cd08232 165 AGKRVLVTGAGPIGALVVAAARRAGAAEIVATDLADAPLAVARA----MGADE--TVNLARDPLAAYAA---DKGDFDVV 235 (339)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHH----cCCCE--EEcCCchhhhhhhc---cCCCccEE
Confidence 478899988765 5555666766533389999999887765543 34422 22111 111111 12359999
Q ss_pred EEcCcccHHHHHHHHccccccCeEEEEE
Q 022962 197 VARAVAEMRILAEYCLPLVRVGGLFVAA 224 (289)
Q Consensus 197 ~sn~~~~~~~ll~~~~~~LkpgG~l~~~ 224 (289)
+...-. ...++.+.+.|+++|+++..
T Consensus 236 ld~~g~--~~~~~~~~~~L~~~G~~v~~ 261 (339)
T cd08232 236 FEASGA--PAALASALRVVRPGGTVVQV 261 (339)
T ss_pred EECCCC--HHHHHHHHHHHhcCCEEEEE
Confidence 975432 23466777889999999864
No 329
>PRK10458 DNA cytosine methylase; Provisional
Probab=90.52 E-value=18 Score=35.28 Aligned_cols=60 Identities=8% Similarity=-0.091 Sum_probs=41.4
Q ss_pred CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccC
Q 022962 122 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLG 184 (289)
Q Consensus 122 ~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~ 184 (289)
..+++|+-||.|.+++.+-.. +.--|.++|+++.+.+..+.|... ..+..++.+|+.++.
T Consensus 88 ~~~~iDLFsGiGGl~lGfe~a-G~~~v~a~Eid~~A~~TY~~N~~~--~p~~~~~~~DI~~i~ 147 (467)
T PRK10458 88 AFRFIDLFAGIGGIRRGFEAI-GGQCVFTSEWNKHAVRTYKANWYC--DPATHRFNEDIRDIT 147 (467)
T ss_pred CceEEEeCcCccHHHHHHHHc-CCEEEEEEechHHHHHHHHHHcCC--CCccceeccChhhCc
Confidence 568999999999888777544 333578999999988877776321 112344556776654
No 330
>PRK07806 short chain dehydrogenase; Provisional
Probab=90.22 E-value=2.4 Score=36.72 Aligned_cols=103 Identities=17% Similarity=0.049 Sum_probs=62.0
Q ss_pred CCeEEEEcCCCChHHHHHHHHC--CCCEEEEEeCCh-HHHHHHHHHHHHcCCCCEEEEeccccccCCCC-cC------CC
Q 022962 122 NLKLVDVGTGAGLPGLVLAIAC--PDWKVTLLESMN-KRCVFLEHAVSLTQLLNVQIVRGRAETLGKDV-SF------RE 191 (289)
Q Consensus 122 ~~~VLDiGcG~G~~~l~la~~~--p~~~V~~iD~s~-~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~-~~------~~ 191 (289)
+.++|-.|+.+ .+|..+++.+ .+.+|++++.+. ...+......+..+ .++.++.+|+.+...-. .. -+
T Consensus 6 ~k~vlItGasg-giG~~l~~~l~~~G~~V~~~~r~~~~~~~~~~~~l~~~~-~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 83 (248)
T PRK07806 6 GKTALVTGSSR-GIGADTAKILAGAGAHVVVNYRQKAPRANKVVAEIEAAG-GRASAVGADLTDEESVAALMDTAREEFG 83 (248)
T ss_pred CcEEEEECCCC-cHHHHHHHHHHHCCCEEEEEeCCchHhHHHHHHHHHhcC-CceEEEEcCCCCHHHHHHHHHHHHHhCC
Confidence 57899999654 4677777643 467899988764 23333333333333 25778888887643110 00 03
Q ss_pred CceEEEEcCcc-----------------cHHHHHHHHccccccCeEEEEEEc
Q 022962 192 QYDVAVARAVA-----------------EMRILAEYCLPLVRVGGLFVAAKG 226 (289)
Q Consensus 192 ~fD~V~sn~~~-----------------~~~~ll~~~~~~LkpgG~l~~~~g 226 (289)
..|.|+.++-. ....+++.+.+.++.+|.+++..+
T Consensus 84 ~~d~vi~~ag~~~~~~~~~~~~~~vn~~~~~~l~~~~~~~~~~~~~iv~isS 135 (248)
T PRK07806 84 GLDALVLNASGGMESGMDEDYAMRLNRDAQRNLARAALPLMPAGSRVVFVTS 135 (248)
T ss_pred CCcEEEECCCCCCCCCCCcceeeEeeeHHHHHHHHHHHhhccCCceEEEEeC
Confidence 57988877411 134567777777777788876643
No 331
>PF05206 TRM13: Methyltransferase TRM13; InterPro: IPR007871 This entry consists of eukaryotic and bacterial proteins that specifically methylates guanosine-4 in various tRNAs with a Gly(CCG), His or Pro signatures []. The alignment contains some conserved cysteines and histidines that might form a zinc binding site.; GO: 0008168 methyltransferase activity, 0008033 tRNA processing
Probab=90.16 E-value=0.7 Score=41.42 Aligned_cols=64 Identities=16% Similarity=0.164 Sum_probs=43.1
Q ss_pred CCCeEEEEcCCCChHHHHHHHHC-----CCCEEEEEeCChHHHHHHHHHHHHcCC-CCEEEEeccccccCC
Q 022962 121 SNLKLVDVGTGAGLPGLVLAIAC-----PDWKVTLLESMNKRCVFLEHAVSLTQL-LNVQIVRGRAETLGK 185 (289)
Q Consensus 121 ~~~~VLDiGcG~G~~~l~la~~~-----p~~~V~~iD~s~~~l~~a~~~~~~~~l-~ni~~~~~d~~~~~~ 185 (289)
+...++|+|||.|.++-.++... +...++.||........=+. .+.... ..++=+..||.++..
T Consensus 18 ~~~~~vEfGaGrg~LS~~v~~~~~~~~~~~~~~~lIDR~~~R~K~D~~-~~~~~~~~~~~R~riDI~dl~l 87 (259)
T PF05206_consen 18 PDSCFVEFGAGRGELSRWVAQALQEDKPSNSRFVLIDRASNRHKADNK-IRKDESEPKFERLRIDIKDLDL 87 (259)
T ss_pred CCCEEEEECCCchHHHHHHHHHhhhcccCCccEEEEecCcccccchhh-hhccCCCCceEEEEEEeeccch
Confidence 36689999999999999999887 45789999986543322222 222221 135556678888754
No 332
>cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases. This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=89.93 E-value=1.3 Score=40.85 Aligned_cols=99 Identities=14% Similarity=0.100 Sum_probs=56.8
Q ss_pred CCCCCeEEEEcCC-CChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCE-EEEecccc-ccCCCCcCCCCceE
Q 022962 119 CNSNLKLVDVGTG-AGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNV-QIVRGRAE-TLGKDVSFREQYDV 195 (289)
Q Consensus 119 ~~~~~~VLDiGcG-~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni-~~~~~d~~-~~~~~~~~~~~fD~ 195 (289)
++++.+||=.|+| .|..++.+|+......|+++|.+++..+.+++ +|.+.+ .....+.. .+... .....+|+
T Consensus 164 ~~~g~~vlI~g~g~iG~~~~~lak~~G~~~v~~~~~~~~~~~~~~~----~g~~~~v~~~~~~~~~~i~~~-~~~~~~d~ 238 (351)
T cd08285 164 IKLGDTVAVFGIGPVGLMAVAGARLRGAGRIIAVGSRPNRVELAKE----YGATDIVDYKNGDVVEQILKL-TGGKGVDA 238 (351)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHH----cCCceEecCCCCCHHHHHHHH-hCCCCCcE
Confidence 3457888888764 23334445666544479999999887766653 554321 11111110 01000 01246999
Q ss_pred EEEcCcccHHHHHHHHccccccCeEEEEE
Q 022962 196 AVARAVAEMRILAEYCLPLVRVGGLFVAA 224 (289)
Q Consensus 196 V~sn~~~~~~~ll~~~~~~LkpgG~l~~~ 224 (289)
|+-..-. ...+..+.+.|+++|+++..
T Consensus 239 vld~~g~--~~~~~~~~~~l~~~G~~v~~ 265 (351)
T cd08285 239 VIIAGGG--QDTFEQALKVLKPGGTISNV 265 (351)
T ss_pred EEECCCC--HHHHHHHHHHhhcCCEEEEe
Confidence 9864322 24567778889999998754
No 333
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=89.87 E-value=1.5 Score=39.26 Aligned_cols=96 Identities=24% Similarity=0.188 Sum_probs=54.3
Q ss_pred CCCeEEEEcCCCChHHHH---HHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCcCCCCceEEE
Q 022962 121 SNLKLVDVGTGAGLPGLV---LAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAV 197 (289)
Q Consensus 121 ~~~~VLDiGcG~G~~~l~---la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~~~~~fD~V~ 197 (289)
++.+||=+|+| .+|+. +|+.....+|+++|.+++..+.+++ +|.+.+--.......+... .....+|+|+
T Consensus 120 ~g~~VlV~G~G--~vG~~~~~~ak~~G~~~Vi~~~~~~~r~~~a~~----~Ga~~~i~~~~~~~~~~~~-~~~~g~d~vi 192 (280)
T TIGR03366 120 KGRRVLVVGAG--MLGLTAAAAAAAAGAARVVAADPSPDRRELALS----FGATALAEPEVLAERQGGL-QNGRGVDVAL 192 (280)
T ss_pred CCCEEEEECCC--HHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHH----cCCcEecCchhhHHHHHHH-hCCCCCCEEE
Confidence 37788888764 45544 4555543459999999988776654 4543211001001111000 0123589988
Q ss_pred EcCcccHHHHHHHHccccccCeEEEEEE
Q 022962 198 ARAVAEMRILAEYCLPLVRVGGLFVAAK 225 (289)
Q Consensus 198 sn~~~~~~~ll~~~~~~LkpgG~l~~~~ 225 (289)
-..-. ...++.+.+.|+++|++++.-
T Consensus 193 d~~G~--~~~~~~~~~~l~~~G~iv~~G 218 (280)
T TIGR03366 193 EFSGA--TAAVRACLESLDVGGTAVLAG 218 (280)
T ss_pred ECCCC--hHHHHHHHHHhcCCCEEEEec
Confidence 54211 235666678899999998653
No 334
>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase. Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=89.83 E-value=1.6 Score=40.32 Aligned_cols=98 Identities=14% Similarity=0.064 Sum_probs=55.1
Q ss_pred CCCCeEEEEcCCC-ChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCE-EEEeccccccCC---CCcCCCCce
Q 022962 120 NSNLKLVDVGTGA-GLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNV-QIVRGRAETLGK---DVSFREQYD 194 (289)
Q Consensus 120 ~~~~~VLDiGcG~-G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni-~~~~~d~~~~~~---~~~~~~~fD 194 (289)
+++.+||=.|+|+ |..++.+|+.. +.+|+++|.+++.++.+++ +|.+.+ .....+.+++.. .......+|
T Consensus 165 ~~g~~VlV~G~G~vG~~a~~~a~~~-G~~vi~~~~~~~~~~~~~~----~Ga~~~i~~~~~~~~~~~~~~~~~t~~~g~d 239 (349)
T TIGR03201 165 KKGDLVIVIGAGGVGGYMVQTAKAM-GAAVVAIDIDPEKLEMMKG----FGADLTLNPKDKSAREVKKLIKAFAKARGLR 239 (349)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHc-CCeEEEEcCCHHHHHHHHH----hCCceEecCccccHHHHHHHHHhhcccCCCC
Confidence 4588999999854 55555566665 4589999999988777654 454321 111111111100 000012344
Q ss_pred ----EEEEcCcccHHHHHHHHccccccCeEEEEE
Q 022962 195 ----VAVARAVAEMRILAEYCLPLVRVGGLFVAA 224 (289)
Q Consensus 195 ----~V~sn~~~~~~~ll~~~~~~LkpgG~l~~~ 224 (289)
+|+-. ... ...++.+.++|++||++++.
T Consensus 240 ~~~d~v~d~-~g~-~~~~~~~~~~l~~~G~iv~~ 271 (349)
T TIGR03201 240 STGWKIFEC-SGS-KPGQESALSLLSHGGTLVVV 271 (349)
T ss_pred CCcCEEEEC-CCC-hHHHHHHHHHHhcCCeEEEE
Confidence 55522 221 23556667789999999764
No 335
>TIGR01761 thiaz-red thiazolinyl imide reductase. This reductase is found associated with gene clusters for the biosynthesis of various non-ribosomal peptide derived natural products in which cysteine is cyclized to a thiazoline ring containing an imide double bond. Examples include yersiniabactin (irp3/YbtU) and pyochelin (PchG).
Probab=89.73 E-value=3.1 Score=38.84 Aligned_cols=113 Identities=19% Similarity=0.157 Sum_probs=70.2
Q ss_pred CCeEEEEcCCCChHHHHHHHHCC-CCEEEE-EeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCcCCCCceEEEEc
Q 022962 122 NLKLVDVGTGAGLPGLVLAIACP-DWKVTL-LESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVAR 199 (289)
Q Consensus 122 ~~~VLDiGcG~G~~~l~la~~~p-~~~V~~-iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~~~~~fD~V~sn 199 (289)
..+|.=+|||-|..=+......+ +.+++| +|.+++. +++.++++|.. ...|++++... ..+|+|...
T Consensus 3 ~~rVgViG~~~G~~h~~al~~~~~~~eLvaV~d~~~er---A~~~A~~~gi~----~y~~~eell~d----~Di~~V~ip 71 (343)
T TIGR01761 3 VQSVVVCGTRFGQFYLAAFAAAPERFELAGILAQGSER---SRALAHRLGVP----LYCEVEELPDD----IDIACVVVR 71 (343)
T ss_pred CcEEEEEeHHHHHHHHHHHHhCCCCcEEEEEEcCCHHH---HHHHHHHhCCC----ccCCHHHHhcC----CCEEEEEeC
Confidence 45788899976643222222345 678777 6777654 66666777653 34677777532 357777764
Q ss_pred C-c--ccHHHHHHHHccccccCeEEEEEEcCCcHHHHHHHHHHHHHhCCeEeE
Q 022962 200 A-V--AEMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLLQ 249 (289)
Q Consensus 200 ~-~--~~~~~ll~~~~~~LkpgG~l~~~~g~~~~~ei~~~~~~l~~~g~~~~~ 249 (289)
. . .....+. ..+|+-|=.++++++-. .+|.+++.+..++.|.....
T Consensus 72 t~~P~~~H~e~a---~~aL~aGkHVL~EKPla-~~Ea~el~~~A~~~g~~l~v 120 (343)
T TIGR01761 72 SAIVGGQGSALA---RALLARGIHVLQEHPLH-PRDIQDLLRLAERQGRRYLV 120 (343)
T ss_pred CCCCCccHHHHH---HHHHhCCCeEEEcCCCC-HHHHHHHHHHHHHcCCEEEE
Confidence 2 1 1222333 34667777888888765 67888888888888876553
No 336
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=89.58 E-value=1.5 Score=35.19 Aligned_cols=89 Identities=17% Similarity=0.190 Sum_probs=54.8
Q ss_pred CCChHHHHHHHHC--CCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEecc-------ccccCCCCcCCCCceEEEEcC-
Q 022962 131 GAGLPGLVLAIAC--PDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGR-------AETLGKDVSFREQYDVAVARA- 200 (289)
Q Consensus 131 G~G~~~l~la~~~--p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d-------~~~~~~~~~~~~~fD~V~sn~- 200 (289)
|.|.+|..+|..+ .+.+|+.++.++ .++..++ .|+ ++...+ ...........+.||+|+...
T Consensus 5 G~GaiG~~~a~~L~~~g~~V~l~~r~~-~~~~~~~----~g~---~~~~~~~~~~~~~~~~~~~~~~~~~~~D~viv~vK 76 (151)
T PF02558_consen 5 GAGAIGSLYAARLAQAGHDVTLVSRSP-RLEAIKE----QGL---TITGPDGDETVQPPIVISAPSADAGPYDLVIVAVK 76 (151)
T ss_dssp STSHHHHHHHHHHHHTTCEEEEEESHH-HHHHHHH----HCE---EEEETTEEEEEEEEEEESSHGHHHSTESEEEE-SS
T ss_pred CcCHHHHHHHHHHHHCCCceEEEEccc-cHHhhhh----eeE---EEEecccceecccccccCcchhccCCCcEEEEEec
Confidence 5667888877554 678999999987 4444332 232 222111 001111001136799999764
Q ss_pred cccHHHHHHHHccccccCeEEEEEEcC
Q 022962 201 VAEMRILAEYCLPLVRVGGLFVAAKGH 227 (289)
Q Consensus 201 ~~~~~~ll~~~~~~LkpgG~l~~~~g~ 227 (289)
-...+..++.+.+.+.++..+++....
T Consensus 77 a~~~~~~l~~l~~~~~~~t~iv~~qNG 103 (151)
T PF02558_consen 77 AYQLEQALQSLKPYLDPNTTIVSLQNG 103 (151)
T ss_dssp GGGHHHHHHHHCTGEETTEEEEEESSS
T ss_pred ccchHHHHHHHhhccCCCcEEEEEeCC
Confidence 346788999999999999888877643
No 337
>cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members. This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD
Probab=89.56 E-value=2.4 Score=37.35 Aligned_cols=91 Identities=22% Similarity=0.089 Sum_probs=55.7
Q ss_pred CCCeEEEEcCCC-ChHHHHHHHHCCCCE-EEEEeCChHHHHHHHHHHHHcC-CCCEEEEeccccccCCCCcCCCCceEEE
Q 022962 121 SNLKLVDVGTGA-GLPGLVLAIACPDWK-VTLLESMNKRCVFLEHAVSLTQ-LLNVQIVRGRAETLGKDVSFREQYDVAV 197 (289)
Q Consensus 121 ~~~~VLDiGcG~-G~~~l~la~~~p~~~-V~~iD~s~~~l~~a~~~~~~~~-l~ni~~~~~d~~~~~~~~~~~~~fD~V~ 197 (289)
++.+||=.|+|. |..++.+|+... .+ |++++.+++..+.+++ .| .+.+..... ... ....+|+|+
T Consensus 97 ~g~~vlI~g~g~vg~~~i~~a~~~g-~~~vi~~~~~~~~~~~~~~----~g~~~~~~~~~~---~~~----~~~~~d~vl 164 (277)
T cd08255 97 LGERVAVVGLGLVGLLAAQLAKAAG-AREVVGVDPDAARRELAEA----LGPADPVAADTA---DEI----GGRGADVVI 164 (277)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcC-CCcEEEECCCHHHHHHHHH----cCCCccccccch---hhh----cCCCCCEEE
Confidence 477888888764 555556676654 45 9999999888766554 34 111111100 110 124689998
Q ss_pred EcCcccHHHHHHHHccccccCeEEEEEE
Q 022962 198 ARAVAEMRILAEYCLPLVRVGGLFVAAK 225 (289)
Q Consensus 198 sn~~~~~~~ll~~~~~~LkpgG~l~~~~ 225 (289)
..... ...+..+.+.|+++|+++..-
T Consensus 165 ~~~~~--~~~~~~~~~~l~~~g~~~~~g 190 (277)
T cd08255 165 EASGS--PSALETALRLLRDRGRVVLVG 190 (277)
T ss_pred EccCC--hHHHHHHHHHhcCCcEEEEEe
Confidence 65322 235666778899999998653
No 338
>PTZ00357 methyltransferase; Provisional
Probab=89.46 E-value=1 Score=45.58 Aligned_cols=98 Identities=14% Similarity=0.104 Sum_probs=60.4
Q ss_pred CeEEEEcCCCChHHHHH---HHHC-CCCEEEEEeCChHHHHHHHHHHHH-cCC--------CCEEEEeccccccCCCC--
Q 022962 123 LKLVDVGTGAGLPGLVL---AIAC-PDWKVTLLESMNKRCVFLEHAVSL-TQL--------LNVQIVRGRAETLGKDV-- 187 (289)
Q Consensus 123 ~~VLDiGcG~G~~~l~l---a~~~-p~~~V~~iD~s~~~l~~a~~~~~~-~~l--------~ni~~~~~d~~~~~~~~-- 187 (289)
..|+=+|+|-|-+--.. +... -..+|++||.|+.++.+...+... ..- +.|+++..|+.++..+.
T Consensus 702 vVImVVGAGRGPLVdraLrAak~~gvkVrIyAVEKNPpAA~~tllr~~N~eeW~n~~~~~G~~VtII~sDMR~W~~pe~~ 781 (1072)
T PTZ00357 702 LHLVLLGCGRGPLIDECLHAVSALGVRLRIFAIEKNLPAAAFTRMRWANDPEWTQLAYTFGHTLEVIVADGRTIATAAEN 781 (1072)
T ss_pred EEEEEEcCCccHHHHHHHHHHHHcCCcEEEEEEecCcchHHHHHHHHhcccccccccccCCCeEEEEeCccccccccccc
Confidence 36899999999764332 2221 246899999997765555444222 112 13899999999985321
Q ss_pred ------cCCCCceEEEEc---Cccc---HHHHHHHHcccccc----CeE
Q 022962 188 ------SFREQYDVAVAR---AVAE---MRILAEYCLPLVRV----GGL 220 (289)
Q Consensus 188 ------~~~~~fD~V~sn---~~~~---~~~ll~~~~~~Lkp----gG~ 220 (289)
..-+++|+|||- .+.+ -++-|..+.+.||+ +|.
T Consensus 782 ~s~~~P~~~gKaDIVVSELLGSFGDNELSPECLDGaQrfLKdiqhsdGI 830 (1072)
T PTZ00357 782 GSLTLPADFGLCDLIVSELLGSLGDNELSPECLEAFHAQLEDIQLSRGI 830 (1072)
T ss_pred ccccccccccccceehHhhhcccccccCCHHHHHHHHHhhhhhcccccc
Confidence 001379999995 1111 24566666667765 665
No 339
>PLN02827 Alcohol dehydrogenase-like
Probab=89.42 E-value=1.6 Score=41.00 Aligned_cols=96 Identities=14% Similarity=0.029 Sum_probs=54.6
Q ss_pred CCCCCeEEEEcCCCChHHHH---HHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEec---cccc-cCCCCcCCC
Q 022962 119 CNSNLKLVDVGTGAGLPGLV---LAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRG---RAET-LGKDVSFRE 191 (289)
Q Consensus 119 ~~~~~~VLDiGcG~G~~~l~---la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~---d~~~-~~~~~~~~~ 191 (289)
+.++.+||=.|+ |.+|+. +|+......|+++|.+++..+.++ ++|.+.+--... ++.+ +.. ...+
T Consensus 191 ~~~g~~VlV~G~--G~vG~~~iqlak~~G~~~vi~~~~~~~~~~~a~----~lGa~~~i~~~~~~~~~~~~v~~--~~~~ 262 (378)
T PLN02827 191 VSKGSSVVIFGL--GTVGLSVAQGAKLRGASQIIGVDINPEKAEKAK----TFGVTDFINPNDLSEPIQQVIKR--MTGG 262 (378)
T ss_pred CCCCCEEEEECC--CHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHH----HcCCcEEEcccccchHHHHHHHH--HhCC
Confidence 345889999876 445544 455554446999999988776664 356532210011 1111 100 0113
Q ss_pred CceEEEEcCcccHHHHHHHHccccccC-eEEEEE
Q 022962 192 QYDVAVARAVAEMRILAEYCLPLVRVG-GLFVAA 224 (289)
Q Consensus 192 ~fD~V~sn~~~~~~~ll~~~~~~Lkpg-G~l~~~ 224 (289)
.+|+|+-..-. ...+..+.+.+++| |++++.
T Consensus 263 g~d~vid~~G~--~~~~~~~l~~l~~g~G~iv~~ 294 (378)
T PLN02827 263 GADYSFECVGD--TGIATTALQSCSDGWGLTVTL 294 (378)
T ss_pred CCCEEEECCCC--hHHHHHHHHhhccCCCEEEEE
Confidence 68998854322 12445566788998 998764
No 340
>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
Probab=88.99 E-value=1.8 Score=39.36 Aligned_cols=85 Identities=20% Similarity=0.103 Sum_probs=51.3
Q ss_pred CCeEEEEcCCC-ChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCcCCCCceEEEEcC
Q 022962 122 NLKLVDVGTGA-GLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARA 200 (289)
Q Consensus 122 ~~~VLDiGcG~-G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~~~~~fD~V~sn~ 200 (289)
+.+||=+|||+ |..++.+|+......|+++|.+++.++.+.. .. ++ |..+. ....||+|+-..
T Consensus 145 ~~~vlV~G~G~vG~~a~q~ak~~G~~~v~~~~~~~~rl~~a~~----~~-----~i--~~~~~-----~~~g~Dvvid~~ 208 (308)
T TIGR01202 145 VLPDLIVGHGTLGRLLARLTKAAGGSPPAVWETNPRRRDGATG----YE-----VL--DPEKD-----PRRDYRAIYDAS 208 (308)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHhhhh----cc-----cc--Chhhc-----cCCCCCEEEECC
Confidence 56788888652 4444556666655568889998877665543 11 11 11110 124689988543
Q ss_pred cccHHHHHHHHccccccCeEEEEE
Q 022962 201 VAEMRILAEYCLPLVRVGGLFVAA 224 (289)
Q Consensus 201 ~~~~~~ll~~~~~~LkpgG~l~~~ 224 (289)
-. ...++.+.+.|+++|+++++
T Consensus 209 G~--~~~~~~~~~~l~~~G~iv~~ 230 (308)
T TIGR01202 209 GD--PSLIDTLVRRLAKGGEIVLA 230 (308)
T ss_pred CC--HHHHHHHHHhhhcCcEEEEE
Confidence 22 23566677889999999864
No 341
>PRK06940 short chain dehydrogenase; Provisional
Probab=88.87 E-value=1.7 Score=38.82 Aligned_cols=98 Identities=16% Similarity=0.056 Sum_probs=58.8
Q ss_pred eEEEEcCCCChHHHHHHHHC-CCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCC------cCCCCceEE
Q 022962 124 KLVDVGTGAGLPGLVLAIAC-PDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDV------SFREQYDVA 196 (289)
Q Consensus 124 ~VLDiGcG~G~~~l~la~~~-p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~------~~~~~fD~V 196 (289)
.+|=-|+ |.+|..+|+.+ .+.+|+++|.++..++.+.+..+..+. ++.++..|+.+...-. ...+..|.+
T Consensus 4 ~~lItGa--~gIG~~la~~l~~G~~Vv~~~r~~~~~~~~~~~l~~~~~-~~~~~~~Dv~d~~~i~~~~~~~~~~g~id~l 80 (275)
T PRK06940 4 VVVVIGA--GGIGQAIARRVGAGKKVLLADYNEENLEAAAKTLREAGF-DVSTQEVDVSSRESVKALAATAQTLGPVTGL 80 (275)
T ss_pred EEEEECC--ChHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcCC-eEEEEEeecCCHHHHHHHHHHHHhcCCCCEE
Confidence 4555565 46888888765 457999999998766555444444332 5778888886642100 001468999
Q ss_pred EEcCc-----cc-----------HHHHHHHHccccccCeEEEEE
Q 022962 197 VARAV-----AE-----------MRILAEYCLPLVRVGGLFVAA 224 (289)
Q Consensus 197 ~sn~~-----~~-----------~~~ll~~~~~~LkpgG~l~~~ 224 (289)
+.|+- .+ .-.+++.+.+.++++|..+++
T Consensus 81 i~nAG~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~g~iv~i 124 (275)
T PRK06940 81 VHTAGVSPSQASPEAILKVDLYGTALVLEEFGKVIAPGGAGVVI 124 (275)
T ss_pred EECCCcCCchhhHHHHHHHhhHHHHHHHHHHHHHHhhCCCEEEE
Confidence 98841 11 123445555566666666544
No 342
>PLN03154 putative allyl alcohol dehydrogenase; Provisional
Probab=88.80 E-value=2.7 Score=38.99 Aligned_cols=96 Identities=11% Similarity=0.036 Sum_probs=59.1
Q ss_pred CCCCeEEEEcCC--CChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEe-c-cccc-cCCCCcCCCCce
Q 022962 120 NSNLKLVDVGTG--AGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVR-G-RAET-LGKDVSFREQYD 194 (289)
Q Consensus 120 ~~~~~VLDiGcG--~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~-~-d~~~-~~~~~~~~~~fD 194 (289)
.++.+||=.|++ .|..++.+|+.. +.+|++++.+++..+.++. .+|.+.+--.. . +..+ +... ..+.+|
T Consensus 157 ~~g~~VlV~GaaG~vG~~aiqlAk~~-G~~Vi~~~~~~~k~~~~~~---~lGa~~vi~~~~~~~~~~~i~~~--~~~gvD 230 (348)
T PLN03154 157 KKGDSVFVSAASGAVGQLVGQLAKLH-GCYVVGSAGSSQKVDLLKN---KLGFDEAFNYKEEPDLDAALKRY--FPEGID 230 (348)
T ss_pred CCCCEEEEecCccHHHHHHHHHHHHc-CCEEEEEcCCHHHHHHHHH---hcCCCEEEECCCcccHHHHHHHH--CCCCcE
Confidence 357899999983 566666777765 5789999999887666542 35654221111 1 2211 1100 123689
Q ss_pred EEEEcCcccHHHHHHHHccccccCeEEEEE
Q 022962 195 VAVARAVAEMRILAEYCLPLVRVGGLFVAA 224 (289)
Q Consensus 195 ~V~sn~~~~~~~ll~~~~~~LkpgG~l~~~ 224 (289)
+|+-..- . ..+..+.+.|+++|+++++
T Consensus 231 ~v~d~vG-~--~~~~~~~~~l~~~G~iv~~ 257 (348)
T PLN03154 231 IYFDNVG-G--DMLDAALLNMKIHGRIAVC 257 (348)
T ss_pred EEEECCC-H--HHHHHHHHHhccCCEEEEE
Confidence 9985432 2 3567778899999998864
No 343
>cd08261 Zn_ADH7 Alcohol dehydrogenases of the MDR family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase,
Probab=88.63 E-value=1.8 Score=39.55 Aligned_cols=96 Identities=21% Similarity=0.189 Sum_probs=57.5
Q ss_pred CCCeEEEEcCCC-ChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCE-EEEeccc-cccCCCCcCCCCceEEE
Q 022962 121 SNLKLVDVGTGA-GLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNV-QIVRGRA-ETLGKDVSFREQYDVAV 197 (289)
Q Consensus 121 ~~~~VLDiGcG~-G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni-~~~~~d~-~~~~~~~~~~~~fD~V~ 197 (289)
++.+||-.|+|. |..++.+|+.. +.+|+++..+++..+.+++ ++.+.+ .....+. +.+... .....+|+++
T Consensus 159 ~g~~vLI~g~g~vG~~a~~lA~~~-g~~v~~~~~s~~~~~~~~~----~g~~~v~~~~~~~~~~~l~~~-~~~~~vd~vl 232 (337)
T cd08261 159 AGDTVLVVGAGPIGLGVIQVAKAR-GARVIVVDIDDERLEFARE----LGADDTINVGDEDVAARLREL-TDGEGADVVI 232 (337)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHc-CCeEEEECCCHHHHHHHHH----hCCCEEecCcccCHHHHHHHH-hCCCCCCEEE
Confidence 477999998763 55666677664 6789999888887766643 343222 1111111 111100 0124599999
Q ss_pred EcCcccHHHHHHHHccccccCeEEEEE
Q 022962 198 ARAVAEMRILAEYCLPLVRVGGLFVAA 224 (289)
Q Consensus 198 sn~~~~~~~ll~~~~~~LkpgG~l~~~ 224 (289)
..... ...+..+.+.|+++|.++..
T Consensus 233 d~~g~--~~~~~~~~~~l~~~G~~i~~ 257 (337)
T cd08261 233 DATGN--PASMEEAVELVAHGGRVVLV 257 (337)
T ss_pred ECCCC--HHHHHHHHHHHhcCCEEEEE
Confidence 76322 23566777889999998754
No 344
>PRK08945 putative oxoacyl-(acyl carrier protein) reductase; Provisional
Probab=88.51 E-value=2.3 Score=36.88 Aligned_cols=79 Identities=13% Similarity=0.005 Sum_probs=51.9
Q ss_pred CCCeEEEEcCCCChHHHHHHHHC--CCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCC---------CcC
Q 022962 121 SNLKLVDVGTGAGLPGLVLAIAC--PDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKD---------VSF 189 (289)
Q Consensus 121 ~~~~VLDiGcG~G~~~l~la~~~--p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~---------~~~ 189 (289)
++.+||=.|+ +|.+|..+++.+ .+.+|+++|.+....+...+..+..+..++.++..|+...... ...
T Consensus 11 ~~k~vlItG~-~g~iG~~la~~l~~~G~~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~ 89 (247)
T PRK08945 11 KDRIILVTGA-GDGIGREAALTYARHGATVILLGRTEEKLEAVYDEIEAAGGPQPAIIPLDLLTATPQNYQQLADTIEEQ 89 (247)
T ss_pred CCCEEEEeCC-CchHHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHhcCCCCceEEEecccCCCHHHHHHHHHHHHHH
Confidence 3778999995 666788877653 4679999999987766665555555544577777777422100 000
Q ss_pred CCCceEEEEcC
Q 022962 190 REQYDVAVARA 200 (289)
Q Consensus 190 ~~~fD~V~sn~ 200 (289)
.++.|.|+.++
T Consensus 90 ~~~id~vi~~A 100 (247)
T PRK08945 90 FGRLDGVLHNA 100 (247)
T ss_pred hCCCCEEEECC
Confidence 14689999874
No 345
>KOG3924 consensus Putative protein methyltransferase involved in meiosis and transcriptional silencing (Dot1) [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=88.38 E-value=0.82 Score=43.10 Aligned_cols=105 Identities=16% Similarity=0.137 Sum_probs=67.8
Q ss_pred CCCCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHH-------HcCCC--CEEEEeccccccCCCCcC
Q 022962 119 CNSNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVS-------LTQLL--NVQIVRGRAETLGKDVSF 189 (289)
Q Consensus 119 ~~~~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~-------~~~l~--ni~~~~~d~~~~~~~~~~ 189 (289)
+.+++.-.|+|.|-|.+....|......+=+|++++......+..+.. .+|-. .++.++++..+.......
T Consensus 190 ~g~~D~F~DLGSGVGqlv~~~aa~a~~k~svG~eim~~pS~~a~~~~~~~kk~~k~fGk~~~~~~~i~gsf~~~~~v~eI 269 (419)
T KOG3924|consen 190 LGPADVFMDLGSGVGQLVCFVAAYAGCKKSVGFEIMDKPSQCAELNKEEFKKLMKHFGKKPNKIETIHGSFLDPKRVTEI 269 (419)
T ss_pred cCCCCcccCCCcccchhhHHHHHhhccccccceeeecCcHHHHHHHHHHHHHHHHHhCCCcCceeecccccCCHHHHHHH
Confidence 456788999999999988777766555666788888766666555432 23432 377888877654322122
Q ss_pred CCCceEEEEcCcc---cHHHHHHHHccccccCeEEEE
Q 022962 190 REQYDVAVARAVA---EMRILAEYCLPLVRVGGLFVA 223 (289)
Q Consensus 190 ~~~fD~V~sn~~~---~~~~ll~~~~~~LkpgG~l~~ 223 (289)
....++|++|.++ ++.-=++++..-+++|-+++-
T Consensus 270 ~~eatvi~vNN~~Fdp~L~lr~~eil~~ck~gtrIiS 306 (419)
T KOG3924|consen 270 QTEATVIFVNNVAFDPELKLRSKEILQKCKDGTRIIS 306 (419)
T ss_pred hhcceEEEEecccCCHHHHHhhHHHHhhCCCcceEec
Confidence 3568999999654 222222355566778888773
No 346
>cd08234 threonine_DH_like L-threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=88.33 E-value=4.7 Score=36.50 Aligned_cols=96 Identities=17% Similarity=0.126 Sum_probs=56.6
Q ss_pred CCCeEEEEcCCC-ChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCC-CCcCCCCceEEEE
Q 022962 121 SNLKLVDVGTGA-GLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGK-DVSFREQYDVAVA 198 (289)
Q Consensus 121 ~~~~VLDiGcG~-G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~-~~~~~~~fD~V~s 198 (289)
++.+||-+|+|. |...+.+|+......|++++.+++..+.+++ .+.+ .++..+-.+... .....+.+|+++.
T Consensus 159 ~g~~vlI~g~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~~----~g~~--~~~~~~~~~~~~~~~~~~~~vd~v~~ 232 (334)
T cd08234 159 PGDSVLVFGAGPIGLLLAQLLKLNGASRVTVAEPNEEKLELAKK----LGAT--ETVDPSREDPEAQKEDNPYGFDVVIE 232 (334)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHH----hCCe--EEecCCCCCHHHHHHhcCCCCcEEEE
Confidence 478999998642 4455556666533348999999887776643 3443 222221111100 0001256999997
Q ss_pred cCcccHHHHHHHHccccccCeEEEEE
Q 022962 199 RAVAEMRILAEYCLPLVRVGGLFVAA 224 (289)
Q Consensus 199 n~~~~~~~ll~~~~~~LkpgG~l~~~ 224 (289)
.... ...+..+.+.|+++|+++..
T Consensus 233 ~~~~--~~~~~~~~~~l~~~G~~v~~ 256 (334)
T cd08234 233 ATGV--PKTLEQAIEYARRGGTVLVF 256 (334)
T ss_pred CCCC--hHHHHHHHHHHhcCCEEEEE
Confidence 5322 34666777889999998764
No 347
>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional
Probab=88.13 E-value=2.4 Score=39.01 Aligned_cols=97 Identities=11% Similarity=0.136 Sum_probs=52.9
Q ss_pred CCCeEEEEcCCC-ChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCE-EEEeccccccCCCCcCCCCce-EEE
Q 022962 121 SNLKLVDVGTGA-GLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNV-QIVRGRAETLGKDVSFREQYD-VAV 197 (289)
Q Consensus 121 ~~~~VLDiGcG~-G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni-~~~~~d~~~~~~~~~~~~~fD-~V~ 197 (289)
++.+||=.|+|+ |..++.+|+......|+++|.+++..+.++ ++|.+.+ .....+..++... .....+| +|+
T Consensus 160 ~g~~vlV~G~g~vG~~~~~~a~~~G~~~v~~~~~~~~~~~~~~----~~Ga~~~i~~~~~~~~~~~~~-~~~~~~d~~v~ 234 (347)
T PRK10309 160 EGKNVIIIGAGTIGLLAIQCAVALGAKSVTAIDINSEKLALAK----SLGAMQTFNSREMSAPQIQSV-LRELRFDQLIL 234 (347)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHH----HcCCceEecCcccCHHHHHHH-hcCCCCCeEEE
Confidence 477888888642 223334555554334899999998877664 3454321 1111111111100 0123577 544
Q ss_pred EcCcccHHHHHHHHccccccCeEEEEE
Q 022962 198 ARAVAEMRILAEYCLPLVRVGGLFVAA 224 (289)
Q Consensus 198 sn~~~~~~~ll~~~~~~LkpgG~l~~~ 224 (289)
..... ...+..+.+.|++||++++.
T Consensus 235 -d~~G~-~~~~~~~~~~l~~~G~iv~~ 259 (347)
T PRK10309 235 -ETAGV-PQTVELAIEIAGPRAQLALV 259 (347)
T ss_pred -ECCCC-HHHHHHHHHHhhcCCEEEEE
Confidence 33222 34667777899999998865
No 348
>PRK08703 short chain dehydrogenase; Provisional
Probab=87.97 E-value=2.2 Score=36.77 Aligned_cols=78 Identities=15% Similarity=0.036 Sum_probs=49.0
Q ss_pred CCeEEEEcCCCChHHHHHHHHC--CCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCC----------CcC
Q 022962 122 NLKLVDVGTGAGLPGLVLAIAC--PDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKD----------VSF 189 (289)
Q Consensus 122 ~~~VLDiGcG~G~~~l~la~~~--p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~----------~~~ 189 (289)
+.+|+=.|+ +|.+|..+++.+ .+.+|++++.++..++.....+...+...+.++..|+.+.... ..+
T Consensus 6 ~k~vlItG~-sggiG~~la~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~i~~~~ 84 (239)
T PRK08703 6 DKTILVTGA-SQGLGEQVAKAYAAAGATVILVARHQKKLEKVYDAIVEAGHPEPFAIRFDLMSAEEKEFEQFAATIAEAT 84 (239)
T ss_pred CCEEEEECC-CCcHHHHHHHHHHHcCCEEEEEeCChHHHHHHHHHHHHcCCCCcceEEeeecccchHHHHHHHHHHHHHh
Confidence 578999996 555688877653 4689999999998766655555444433455666666432100 001
Q ss_pred CCCceEEEEcC
Q 022962 190 REQYDVAVARA 200 (289)
Q Consensus 190 ~~~fD~V~sn~ 200 (289)
.+..|.|+.++
T Consensus 85 ~~~id~vi~~a 95 (239)
T PRK08703 85 QGKLDGIVHCA 95 (239)
T ss_pred CCCCCEEEEec
Confidence 14579998773
No 349
>PF11312 DUF3115: Protein of unknown function (DUF3115); InterPro: IPR021463 This eukaryotic family of proteins has no known function.
Probab=87.83 E-value=1.4 Score=40.37 Aligned_cols=107 Identities=18% Similarity=0.234 Sum_probs=69.7
Q ss_pred CCCeEEEEcCCCChHHHHHHHHC--------------------CCCEEEEEeCCh--HHHHHHHHHHHHc----------
Q 022962 121 SNLKLVDVGTGAGLPGLVLAIAC--------------------PDWKVTLLESMN--KRCVFLEHAVSLT---------- 168 (289)
Q Consensus 121 ~~~~VLDiGcG~G~~~l~la~~~--------------------p~~~V~~iD~s~--~~l~~a~~~~~~~---------- 168 (289)
+..+||.||-|.|.=-+.+|-.+ +...|++||+-+ ..++.....+...
T Consensus 86 ~~~~VlCIGGGAGAElVAlAa~~~~~~~~~~s~~~~~~~~~~~~~l~itlvDiAdWs~VV~~L~~~i~s~p~~sk~a~~~ 165 (315)
T PF11312_consen 86 KSLRVLCIGGGAGAELVALAAAFRTRSSEFLSKSPSGVSLSSPPSLSITLVDIADWSSVVDRLTTTITSPPPLSKYASAA 165 (315)
T ss_pred cCceEEEECCChHHHHHHHHHHHhhcccccCCcccccccccCCCcceEEEEEecChHHHHHHHHHhccCCCCcccccccc
Confidence 35799999999987666665443 125899999875 3344444433322
Q ss_pred -----CCC--CEEEEeccccccCCCCc---CC-CCceEEEEc---------CcccHHHHHHHHccccccCeEEEEEEcC
Q 022962 169 -----QLL--NVQIVRGRAETLGKDVS---FR-EQYDVAVAR---------AVAEMRILAEYCLPLVRVGGLFVAAKGH 227 (289)
Q Consensus 169 -----~l~--ni~~~~~d~~~~~~~~~---~~-~~fD~V~sn---------~~~~~~~ll~~~~~~LkpgG~l~~~~g~ 227 (289)
.-+ +++|.+.|+.++..+.. +. ...|+|... ....--.++..+...++||-.|++...+
T Consensus 166 ~~~~~~~~~~~~~F~~~DvL~~~~~~l~~ll~~~~~~LITLlFTlNELfs~s~~kTt~FLl~Lt~~~~~GslLLVvDSp 244 (315)
T PF11312_consen 166 NWPLIEPDRFNVSFTQQDVLSLSEDDLKSLLGPPSPDLITLLFTLNELFSTSISKTTKFLLRLTDICPPGSLLLVVDSP 244 (315)
T ss_pred ccccCCccceeeeEEecccccCChHHHHHHhccchhHHHHHHHHHHHHHhcChHHHHHHHHHHHhhcCCCcEEEEEcCC
Confidence 111 58999999988765310 01 134555432 2345578899999999999999987654
No 350
>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like. MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at
Probab=87.62 E-value=2.2 Score=39.01 Aligned_cols=95 Identities=20% Similarity=0.097 Sum_probs=53.5
Q ss_pred CCCeEEEEcCCCChHHHH---HHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCE-EEEeccccccCCCCcCCCCceEE
Q 022962 121 SNLKLVDVGTGAGLPGLV---LAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNV-QIVRGRAETLGKDVSFREQYDVA 196 (289)
Q Consensus 121 ~~~~VLDiGcG~G~~~l~---la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni-~~~~~d~~~~~~~~~~~~~fD~V 196 (289)
++.+||=+|+ |.+|+. +|+.....+|+++|.+++..+.+++ +|.+.+ .....+.+.+... .....+|+|
T Consensus 163 ~g~~vlV~G~--G~vG~~~~~~ak~~G~~~vi~~~~~~~~~~~~~~----~ga~~~i~~~~~~~~~~~~~-~~~~~~d~v 235 (339)
T cd08239 163 GRDTVLVVGA--GPVGLGALMLARALGAEDVIGVDPSPERLELAKA----LGADFVINSGQDDVQEIREL-TSGAGADVA 235 (339)
T ss_pred CCCEEEEECC--CHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHH----hCCCEEEcCCcchHHHHHHH-hCCCCCCEE
Confidence 4778888876 445544 4555443339999999987766643 454321 1111111111100 012369999
Q ss_pred EEcCcccHHHHHHHHccccccCeEEEEE
Q 022962 197 VARAVAEMRILAEYCLPLVRVGGLFVAA 224 (289)
Q Consensus 197 ~sn~~~~~~~ll~~~~~~LkpgG~l~~~ 224 (289)
+-..-. ...+..+.+.|+++|++++.
T Consensus 236 id~~g~--~~~~~~~~~~l~~~G~~v~~ 261 (339)
T cd08239 236 IECSGN--TAARRLALEAVRPWGRLVLV 261 (339)
T ss_pred EECCCC--HHHHHHHHHHhhcCCEEEEE
Confidence 854322 23445566789999998864
No 351
>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase. The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.
Probab=87.45 E-value=3.7 Score=38.30 Aligned_cols=98 Identities=9% Similarity=0.011 Sum_probs=55.4
Q ss_pred CCCCCeEEEEcCCC-ChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCE-EEEe--ccccc-cCCCCcCCCCc
Q 022962 119 CNSNLKLVDVGTGA-GLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNV-QIVR--GRAET-LGKDVSFREQY 193 (289)
Q Consensus 119 ~~~~~~VLDiGcG~-G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni-~~~~--~d~~~-~~~~~~~~~~f 193 (289)
++++.+||=.|+|+ |..++.+|+.....+|+++|.+++..+.+++ +|.+.+ .... .++.+ +... ..+.+
T Consensus 183 ~~~g~~VlV~G~G~iG~~a~q~Ak~~G~~~Vi~~~~~~~~~~~a~~----~Ga~~~i~~~~~~~~~~~~v~~~--~~~g~ 256 (368)
T TIGR02818 183 VEEGDTVAVFGLGGIGLSVIQGARMAKASRIIAIDINPAKFELAKK----LGATDCVNPNDYDKPIQEVIVEI--TDGGV 256 (368)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH----hCCCeEEcccccchhHHHHHHHH--hCCCC
Confidence 34578999898742 3334445666543489999999988777754 455321 1110 01111 1000 01358
Q ss_pred eEEEEcCcccHHHHHHHHccccccC-eEEEEE
Q 022962 194 DVAVARAVAEMRILAEYCLPLVRVG-GLFVAA 224 (289)
Q Consensus 194 D~V~sn~~~~~~~ll~~~~~~Lkpg-G~l~~~ 224 (289)
|+|+-..-. ...+..+.+.++++ |++++.
T Consensus 257 d~vid~~G~--~~~~~~~~~~~~~~~G~~v~~ 286 (368)
T TIGR02818 257 DYSFECIGN--VNVMRAALECCHKGWGESIII 286 (368)
T ss_pred CEEEECCCC--HHHHHHHHHHhhcCCCeEEEE
Confidence 988854221 23456666788886 998764
No 352
>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase. Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.
Probab=87.42 E-value=3.8 Score=37.23 Aligned_cols=95 Identities=11% Similarity=0.016 Sum_probs=57.7
Q ss_pred CCCeEEEEcC--CCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEec--cccccCCCCcCCCCceEE
Q 022962 121 SNLKLVDVGT--GAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRG--RAETLGKDVSFREQYDVA 196 (289)
Q Consensus 121 ~~~~VLDiGc--G~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~--d~~~~~~~~~~~~~fD~V 196 (289)
++.+||=.|. |.|..++.+|+.. +.+|++++.+++..+.++ .+|.+.+--... +..+.... ...+.+|+|
T Consensus 138 ~g~~VLI~ga~g~vG~~aiqlAk~~-G~~Vi~~~~s~~~~~~~~----~lGa~~vi~~~~~~~~~~~~~~-~~~~gvdvv 211 (325)
T TIGR02825 138 GGETVMVNAAAGAVGSVVGQIAKLK-GCKVVGAAGSDEKVAYLK----KLGFDVAFNYKTVKSLEETLKK-ASPDGYDCY 211 (325)
T ss_pred CCCEEEEeCCccHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHH----HcCCCEEEeccccccHHHHHHH-hCCCCeEEE
Confidence 4789988884 4566666677665 568999999988766664 356543211111 11111000 012469999
Q ss_pred EEcCcccHHHHHHHHccccccCeEEEEE
Q 022962 197 VARAVAEMRILAEYCLPLVRVGGLFVAA 224 (289)
Q Consensus 197 ~sn~~~~~~~ll~~~~~~LkpgG~l~~~ 224 (289)
+-.. .. ..+..+.+.|+++|+++..
T Consensus 212 ~d~~-G~--~~~~~~~~~l~~~G~iv~~ 236 (325)
T TIGR02825 212 FDNV-GG--EFSNTVIGQMKKFGRIAIC 236 (325)
T ss_pred EECC-CH--HHHHHHHHHhCcCcEEEEe
Confidence 8542 22 2346777899999999864
No 353
>PLN02740 Alcohol dehydrogenase-like
Probab=87.41 E-value=2.4 Score=39.81 Aligned_cols=95 Identities=14% Similarity=0.052 Sum_probs=55.7
Q ss_pred CCCCCCeEEEEcCCCChHHHH---HHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEecc-----ccc-cCCCCc
Q 022962 118 SCNSNLKLVDVGTGAGLPGLV---LAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGR-----AET-LGKDVS 188 (289)
Q Consensus 118 ~~~~~~~VLDiGcG~G~~~l~---la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d-----~~~-~~~~~~ 188 (289)
.++++.+||=+|+ |.+|+. +|+.....+|+++|.+++.++.+++ +|.+. ++..+ ..+ +...
T Consensus 195 ~~~~g~~VlV~G~--G~vG~~a~q~ak~~G~~~Vi~~~~~~~r~~~a~~----~Ga~~--~i~~~~~~~~~~~~v~~~-- 264 (381)
T PLN02740 195 NVQAGSSVAIFGL--GAVGLAVAEGARARGASKIIGVDINPEKFEKGKE----MGITD--FINPKDSDKPVHERIREM-- 264 (381)
T ss_pred CCCCCCEEEEECC--CHHHHHHHHHHHHCCCCcEEEEcCChHHHHHHHH----cCCcE--EEecccccchHHHHHHHH--
Confidence 3456889999986 455544 4555543379999999988777754 56532 22111 111 1100
Q ss_pred CCCCceEEEEcCcccHHHHHHHHccccccC-eEEEEE
Q 022962 189 FREQYDVAVARAVAEMRILAEYCLPLVRVG-GLFVAA 224 (289)
Q Consensus 189 ~~~~fD~V~sn~~~~~~~ll~~~~~~Lkpg-G~l~~~ 224 (289)
..+.+|+|+-..-. ...+..+...+++| |++++.
T Consensus 265 ~~~g~dvvid~~G~--~~~~~~a~~~~~~g~G~~v~~ 299 (381)
T PLN02740 265 TGGGVDYSFECAGN--VEVLREAFLSTHDGWGLTVLL 299 (381)
T ss_pred hCCCCCEEEECCCC--hHHHHHHHHhhhcCCCEEEEE
Confidence 11269998865322 23555666778886 988754
No 354
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=87.36 E-value=2.4 Score=40.25 Aligned_cols=71 Identities=20% Similarity=0.349 Sum_probs=47.4
Q ss_pred CeEEEEcCCCChHHHHHHHH---CCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCcCCCCceEEEEc
Q 022962 123 LKLVDVGTGAGLPGLVLAIA---CPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVAR 199 (289)
Q Consensus 123 ~~VLDiGcG~G~~~l~la~~---~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~~~~~fD~V~sn 199 (289)
.+||=||| |..|...|.. ..+.+|+..|.|.+.++.+..... .++++++.|+.+.+.....=..+|+|++-
T Consensus 2 ~~ilviGa--G~Vg~~va~~la~~~d~~V~iAdRs~~~~~~i~~~~~----~~v~~~~vD~~d~~al~~li~~~d~VIn~ 75 (389)
T COG1748 2 MKILVIGA--GGVGSVVAHKLAQNGDGEVTIADRSKEKCARIAELIG----GKVEALQVDAADVDALVALIKDFDLVINA 75 (389)
T ss_pred CcEEEECC--chhHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhhcc----ccceeEEecccChHHHHHHHhcCCEEEEe
Confidence 36889999 5666665543 234799999999887766655322 26888888888763221111356999976
No 355
>cd05285 sorbitol_DH Sorbitol dehydrogenase. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Aldose reductase catalyzes the NADP(H)-dependent conversion of glucose to sorbital, and SDH uses NAD(H) in the conversion of sorbitol to fructose. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=87.30 E-value=3.5 Score=37.73 Aligned_cols=98 Identities=19% Similarity=0.140 Sum_probs=56.5
Q ss_pred CCCCeEEEEcCCC-ChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEE-EEecc----ccccCCCCcCCCCc
Q 022962 120 NSNLKLVDVGTGA-GLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQ-IVRGR----AETLGKDVSFREQY 193 (289)
Q Consensus 120 ~~~~~VLDiGcG~-G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~-~~~~d----~~~~~~~~~~~~~f 193 (289)
.++.+||=.|+|+ |..++.+|+..+...|++++.+++..+.+++ .+.+.+- ....+ ...+... .....+
T Consensus 161 ~~g~~vlI~g~g~vG~~a~~lak~~G~~~v~~~~~~~~~~~~~~~----~g~~~vi~~~~~~~~~~~~~~~~~-~~~~~~ 235 (343)
T cd05285 161 RPGDTVLVFGAGPIGLLTAAVAKAFGATKVVVTDIDPSRLEFAKE----LGATHTVNVRTEDTPESAEKIAEL-LGGKGP 235 (343)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHH----cCCcEEeccccccchhHHHHHHHH-hCCCCC
Confidence 3577888877654 5555666766543349999998887766644 3443221 11111 1111100 012459
Q ss_pred eEEEEcCcccHHHHHHHHccccccCeEEEEE
Q 022962 194 DVAVARAVAEMRILAEYCLPLVRVGGLFVAA 224 (289)
Q Consensus 194 D~V~sn~~~~~~~ll~~~~~~LkpgG~l~~~ 224 (289)
|+|+-..-. ...+..+.+.|+++|+++..
T Consensus 236 d~vld~~g~--~~~~~~~~~~l~~~G~~v~~ 264 (343)
T cd05285 236 DVVIECTGA--ESCIQTAIYATRPGGTVVLV 264 (343)
T ss_pred CEEEECCCC--HHHHHHHHHHhhcCCEEEEE
Confidence 999965322 22566777889999998754
No 356
>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]
Probab=87.05 E-value=1.7 Score=40.43 Aligned_cols=99 Identities=14% Similarity=0.098 Sum_probs=61.8
Q ss_pred CCCCCCCeEEEEcCCC-ChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEec----cccccCCCCcCCC
Q 022962 117 SSCNSNLKLVDVGTGA-GLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRG----RAETLGKDVSFRE 191 (289)
Q Consensus 117 ~~~~~~~~VLDiGcG~-G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~----d~~~~~~~~~~~~ 191 (289)
.+.+++.+|.=+|||. |.-++.-|+.....+|+|||++++++++|++ +|.. .+++. |+-+.-.. ..+.
T Consensus 181 a~v~~G~tvaV~GlGgVGlaaI~gA~~agA~~IiAvD~~~~Kl~~A~~----fGAT--~~vn~~~~~~vv~~i~~-~T~g 253 (366)
T COG1062 181 AKVEPGDTVAVFGLGGVGLAAIQGAKAAGAGRIIAVDINPEKLELAKK----FGAT--HFVNPKEVDDVVEAIVE-LTDG 253 (366)
T ss_pred ccCCCCCeEEEEeccHhHHHHHHHHHHcCCceEEEEeCCHHHHHHHHh----cCCc--eeecchhhhhHHHHHHH-hcCC
Confidence 4567799999999985 6666666777788899999999999988876 4542 33332 12111010 0112
Q ss_pred CceEEEEcCcccHHHHHHHHccccccCeEEEEE
Q 022962 192 QYDVAVARAVAEMRILAEYCLPLVRVGGLFVAA 224 (289)
Q Consensus 192 ~fD~V~sn~~~~~~~ll~~~~~~LkpgG~l~~~ 224 (289)
..|.++- ...+. ..++++...+.++|..++.
T Consensus 254 G~d~~~e-~~G~~-~~~~~al~~~~~~G~~v~i 284 (366)
T COG1062 254 GADYAFE-CVGNV-EVMRQALEATHRGGTSVII 284 (366)
T ss_pred CCCEEEE-ccCCH-HHHHHHHHHHhcCCeEEEE
Confidence 4555531 11222 2666666777778998764
No 357
>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac
Probab=86.94 E-value=3.3 Score=37.40 Aligned_cols=95 Identities=13% Similarity=0.054 Sum_probs=57.8
Q ss_pred CCCCeEEEEcC--CCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCC--CcCCCCceE
Q 022962 120 NSNLKLVDVGT--GAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKD--VSFREQYDV 195 (289)
Q Consensus 120 ~~~~~VLDiGc--G~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~--~~~~~~fD~ 195 (289)
.++.+||=.|. |.|..++.+|+.. +.+|++++.+++..+.+++ +|.+.+ +..+-+++... ....+.+|+
T Consensus 142 ~~g~~vlI~ga~g~vG~~aiqlA~~~-G~~vi~~~~s~~~~~~l~~----~Ga~~v--i~~~~~~~~~~v~~~~~~gvd~ 214 (329)
T cd08294 142 KAGETVVVNGAAGAVGSLVGQIAKIK-GCKVIGCAGSDDKVAWLKE----LGFDAV--FNYKTVSLEEALKEAAPDGIDC 214 (329)
T ss_pred CCCCEEEEecCccHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHHH----cCCCEE--EeCCCccHHHHHHHHCCCCcEE
Confidence 35788888874 4455566677765 5689999999887766654 565332 21111111000 001245899
Q ss_pred EEEcCcccHHHHHHHHccccccCeEEEEE
Q 022962 196 AVARAVAEMRILAEYCLPLVRVGGLFVAA 224 (289)
Q Consensus 196 V~sn~~~~~~~ll~~~~~~LkpgG~l~~~ 224 (289)
|+-.. .. ..++.+.+.|+++|+++..
T Consensus 215 vld~~-g~--~~~~~~~~~l~~~G~iv~~ 240 (329)
T cd08294 215 YFDNV-GG--EFSSTVLSHMNDFGRVAVC 240 (329)
T ss_pred EEECC-CH--HHHHHHHHhhccCCEEEEE
Confidence 88542 22 4567778899999998754
No 358
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=86.53 E-value=12 Score=28.37 Aligned_cols=109 Identities=18% Similarity=0.177 Sum_probs=68.2
Q ss_pred eEEEEcCCCChHHHH--HHHHCCCCEEE-EEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCcCCCCceEEEEcC
Q 022962 124 KLVDVGTGAGLPGLV--LAIACPDWKVT-LLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARA 200 (289)
Q Consensus 124 ~VLDiGcG~G~~~l~--la~~~p~~~V~-~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~~~~~fD~V~sn~ 200 (289)
+|.=||+|...-... +....++.+++ .+|.+++..+.+ ++..+.. ...|++++... ...|+|+...
T Consensus 2 ~v~iiG~G~~g~~~~~~~~~~~~~~~v~~v~d~~~~~~~~~---~~~~~~~----~~~~~~~ll~~----~~~D~V~I~t 70 (120)
T PF01408_consen 2 RVGIIGAGSIGRRHLRALLRSSPDFEVVAVCDPDPERAEAF---AEKYGIP----VYTDLEELLAD----EDVDAVIIAT 70 (120)
T ss_dssp EEEEESTSHHHHHHHHHHHHTTTTEEEEEEECSSHHHHHHH---HHHTTSE----EESSHHHHHHH----TTESEEEEES
T ss_pred EEEEECCcHHHHHHHHHHHhcCCCcEEEEEEeCCHHHHHHH---HHHhccc----chhHHHHHHHh----hcCCEEEEec
Confidence 466688865532222 22233677876 579988764433 5556543 55677776432 4689998653
Q ss_pred -cccHHHHHHHHccccccCeEEEEEEcC-CcHHHHHHHHHHHHHhCCe
Q 022962 201 -VAEMRILAEYCLPLVRVGGLFVAAKGH-DPQEEVKNSERAVQLMGAS 246 (289)
Q Consensus 201 -~~~~~~ll~~~~~~LkpgG~l~~~~g~-~~~~ei~~~~~~l~~~g~~ 246 (289)
......++. .+|+-|-.++++++. ...+++.++.+..++.|..
T Consensus 71 p~~~h~~~~~---~~l~~g~~v~~EKP~~~~~~~~~~l~~~a~~~~~~ 115 (120)
T PF01408_consen 71 PPSSHAEIAK---KALEAGKHVLVEKPLALTLEEAEELVEAAKEKGVK 115 (120)
T ss_dssp SGGGHHHHHH---HHHHTTSEEEEESSSSSSHHHHHHHHHHHHHHTSC
T ss_pred CCcchHHHHH---HHHHcCCEEEEEcCCcCCHHHHHHHHHHHHHhCCE
Confidence 333334443 456667788888864 5678888888888888865
No 359
>KOG0022 consensus Alcohol dehydrogenase, class III [Secondary metabolites biosynthesis, transport and catabolism]
Probab=86.50 E-value=1.7 Score=40.07 Aligned_cols=47 Identities=9% Similarity=-0.034 Sum_probs=37.2
Q ss_pred CCCCCCCeEEEEcCCCChHH-HHHHHHCCCCEEEEEeCChHHHHHHHH
Q 022962 117 SSCNSNLKLVDVGTGAGLPG-LVLAIACPDWKVTLLESMNKRCVFLEH 163 (289)
Q Consensus 117 ~~~~~~~~VLDiGcG~G~~~-l~la~~~p~~~V~~iD~s~~~l~~a~~ 163 (289)
.+.++|.++.=+|+|+=.++ +.-|+.....+++|||++++..+.|++
T Consensus 188 Akv~~GstvAVfGLG~VGLav~~Gaka~GAsrIIgvDiN~~Kf~~ak~ 235 (375)
T KOG0022|consen 188 AKVEPGSTVAVFGLGGVGLAVAMGAKAAGASRIIGVDINPDKFEKAKE 235 (375)
T ss_pred cccCCCCEEEEEecchHHHHHHHhHHhcCcccEEEEecCHHHHHHHHh
Confidence 46778999999999864444 344667778999999999999887766
No 360
>cd08278 benzyl_alcohol_DH Benzyl alcohol dehydrogenase. Benzyl alcohol dehydrogenase is similar to liver alcohol dehydrogenase, but has some amino acid substitutions near the active site, which may determine the enzyme's specificity of oxidizing aromatic substrates. Also known as aryl-alcohol dehydrogenases, they catalyze the conversion of an aromatic alcohol + NAD+ to an aromatic aldehyde + NADH + H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononu
Probab=86.49 E-value=2.5 Score=39.32 Aligned_cols=95 Identities=13% Similarity=0.170 Sum_probs=57.1
Q ss_pred CCCCeEEEEcCCC-ChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccc----cCCCCcCCCCce
Q 022962 120 NSNLKLVDVGTGA-GLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAET----LGKDVSFREQYD 194 (289)
Q Consensus 120 ~~~~~VLDiGcG~-G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~----~~~~~~~~~~fD 194 (289)
.++.+||=.|+|+ |..++.+|+......|+++|.++...+.+++ .+.+ .++..+-.+ +... . ...+|
T Consensus 185 ~~g~~vlI~g~g~vG~~~~~la~~~G~~~v~~~~~~~~k~~~~~~----~g~~--~~i~~~~~~~~~~v~~~-~-~~~~d 256 (365)
T cd08278 185 RPGSSIAVFGAGAVGLAAVMAAKIAGCTTIIAVDIVDSRLELAKE----LGAT--HVINPKEEDLVAAIREI-T-GGGVD 256 (365)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHH----cCCc--EEecCCCcCHHHHHHHH-h-CCCCc
Confidence 4578888887643 4455556666654479999999988766654 4432 122211111 1100 1 24689
Q ss_pred EEEEcCcccHHHHHHHHccccccCeEEEEE
Q 022962 195 VAVARAVAEMRILAEYCLPLVRVGGLFVAA 224 (289)
Q Consensus 195 ~V~sn~~~~~~~ll~~~~~~LkpgG~l~~~ 224 (289)
+|+-..-. ...+..+.+.|+++|+++..
T Consensus 257 ~vld~~g~--~~~~~~~~~~l~~~G~~v~~ 284 (365)
T cd08278 257 YALDTTGV--PAVIEQAVDALAPRGTLALV 284 (365)
T ss_pred EEEECCCC--cHHHHHHHHHhccCCEEEEe
Confidence 99865322 23566777889999998864
No 361
>KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism]
Probab=85.89 E-value=2.3 Score=39.18 Aligned_cols=97 Identities=21% Similarity=0.153 Sum_probs=58.2
Q ss_pred CCCCCCeEEEEcCC-CChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCC-EEEE-eccccc-cCCCCcCCCCc
Q 022962 118 SCNSNLKLVDVGTG-AGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLN-VQIV-RGRAET-LGKDVSFREQY 193 (289)
Q Consensus 118 ~~~~~~~VLDiGcG-~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~n-i~~~-~~d~~~-~~~~~~~~~~f 193 (289)
.+.+|++|-=+|.| -|.+++.+|++. +.+|++||-+.+. -++..+.+|.+. +.+. -.|+-. +.. ..+.-.
T Consensus 178 g~~pG~~vgI~GlGGLGh~aVq~AKAM-G~rV~vis~~~~k---keea~~~LGAd~fv~~~~d~d~~~~~~~--~~dg~~ 251 (360)
T KOG0023|consen 178 GLGPGKWVGIVGLGGLGHMAVQYAKAM-GMRVTVISTSSKK---KEEAIKSLGADVFVDSTEDPDIMKAIMK--TTDGGI 251 (360)
T ss_pred CCCCCcEEEEecCcccchHHHHHHHHh-CcEEEEEeCCchh---HHHHHHhcCcceeEEecCCHHHHHHHHH--hhcCcc
Confidence 34568888777765 588888899886 6899999999744 344566778753 2221 112111 111 112334
Q ss_pred eEEEEcCcccHHHHHHHHccccccCeEEEEE
Q 022962 194 DVAVARAVAEMRILAEYCLPLVRVGGLFVAA 224 (289)
Q Consensus 194 D~V~sn~~~~~~~ll~~~~~~LkpgG~l~~~ 224 (289)
|.|.+-+...++ .+..+||++|.+++.
T Consensus 252 ~~v~~~a~~~~~----~~~~~lk~~Gt~V~v 278 (360)
T KOG0023|consen 252 DTVSNLAEHALE----PLLGLLKVNGTLVLV 278 (360)
T ss_pred eeeeeccccchH----HHHHHhhcCCEEEEE
Confidence 544433333344 444679999999865
No 362
>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional
Probab=85.86 E-value=2.8 Score=41.83 Aligned_cols=80 Identities=14% Similarity=0.022 Sum_probs=51.4
Q ss_pred CCCCeEEEEcCCCChHHHHHHHHC--CCCEEEEEeCChHHHHHHHHHHHHc-----C---CCCEEEEeccccccCCCCcC
Q 022962 120 NSNLKLVDVGTGAGLPGLVLAIAC--PDWKVTLLESMNKRCVFLEHAVSLT-----Q---LLNVQIVRGRAETLGKDVSF 189 (289)
Q Consensus 120 ~~~~~VLDiGcG~G~~~l~la~~~--p~~~V~~iD~s~~~l~~a~~~~~~~-----~---l~ni~~~~~d~~~~~~~~~~ 189 (289)
+.+..||=.|+. |.+|..+++.+ .+.+|++++.+...+.......... | ..++.++.+|+.+...-...
T Consensus 78 ~~gKvVLVTGAT-GgIG~aLAr~LLk~G~~Vval~Rn~ekl~~l~~~l~~~~L~~~Ga~~~~~v~iV~gDLtD~esI~~a 156 (576)
T PLN03209 78 KDEDLAFVAGAT-GKVGSRTVRELLKLGFRVRAGVRSAQRAESLVQSVKQMKLDVEGTQPVEKLEIVECDLEKPDQIGPA 156 (576)
T ss_pred CCCCEEEEECCC-CHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhhhhccccccccccCceEEEEecCCCHHHHHHH
Confidence 357788888874 66788877553 4679999999987765544433321 1 12588899999864321001
Q ss_pred CCCceEEEEcC
Q 022962 190 REQYDVAVARA 200 (289)
Q Consensus 190 ~~~fD~V~sn~ 200 (289)
-+..|+|++++
T Consensus 157 LggiDiVVn~A 167 (576)
T PLN03209 157 LGNASVVICCI 167 (576)
T ss_pred hcCCCEEEEcc
Confidence 14589999874
No 363
>PRK07102 short chain dehydrogenase; Provisional
Probab=85.85 E-value=4.3 Score=35.06 Aligned_cols=75 Identities=12% Similarity=0.020 Sum_probs=49.4
Q ss_pred eEEEEcCCCChHHHHHHHHC--CCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCC----cCCCCceEEE
Q 022962 124 KLVDVGTGAGLPGLVLAIAC--PDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDV----SFREQYDVAV 197 (289)
Q Consensus 124 ~VLDiGcG~G~~~l~la~~~--p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~----~~~~~fD~V~ 197 (289)
+|+=.|+ +|.+|..+++.+ .+.+|+++|.++...+...+.....+-.++.++..|+.+...-. .....+|.++
T Consensus 3 ~vlItGa-s~giG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~d~vv 81 (243)
T PRK07102 3 KILIIGA-TSDIARACARRYAAAGARLYLAARDVERLERLADDLRARGAVAVSTHELDILDTASHAAFLDSLPALPDIVL 81 (243)
T ss_pred EEEEEcC-CcHHHHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHhcCCeEEEEecCCCChHHHHHHHHHHhhcCCEEE
Confidence 6788885 566788877654 36799999999876655444443333347889999988753210 0113579999
Q ss_pred Ec
Q 022962 198 AR 199 (289)
Q Consensus 198 sn 199 (289)
.+
T Consensus 82 ~~ 83 (243)
T PRK07102 82 IA 83 (243)
T ss_pred EC
Confidence 87
No 364
>PRK08324 short chain dehydrogenase; Validated
Probab=85.76 E-value=6.9 Score=39.94 Aligned_cols=101 Identities=13% Similarity=-0.024 Sum_probs=63.6
Q ss_pred CCeEEEEcCCCChHHHHHHHHC--CCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCC-------cCCCC
Q 022962 122 NLKLVDVGTGAGLPGLVLAIAC--PDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDV-------SFREQ 192 (289)
Q Consensus 122 ~~~VLDiGcG~G~~~l~la~~~--p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~-------~~~~~ 192 (289)
+.+||=.|+++ .+|..+++.+ .+.+|+++|.++..++.+....... .++.++..|+.+...-. ...+.
T Consensus 422 gk~vLVTGasg-gIG~~la~~L~~~Ga~Vvl~~r~~~~~~~~~~~l~~~--~~v~~v~~Dvtd~~~v~~~~~~~~~~~g~ 498 (681)
T PRK08324 422 GKVALVTGAAG-GIGKATAKRLAAEGACVVLADLDEEAAEAAAAELGGP--DRALGVACDVTDEAAVQAAFEEAALAFGG 498 (681)
T ss_pred CCEEEEecCCC-HHHHHHHHHHHHCcCEEEEEeCCHHHHHHHHHHHhcc--CcEEEEEecCCCHHHHHHHHHHHHHHcCC
Confidence 57888888754 4677776543 3679999999987766554433322 36888888876532100 00136
Q ss_pred ceEEEEcCcc-----------------------cHHHHHHHHcccccc---CeEEEEEE
Q 022962 193 YDVAVARAVA-----------------------EMRILAEYCLPLVRV---GGLFVAAK 225 (289)
Q Consensus 193 fD~V~sn~~~-----------------------~~~~ll~~~~~~Lkp---gG~l~~~~ 225 (289)
+|+|+.++-. ....+++.+.+.++. +|.+++..
T Consensus 499 iDvvI~~AG~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~g~iV~vs 557 (681)
T PRK08324 499 VDIVVSNAGIAISGPIEETSDEDWRRSFDVNATGHFLVAREAVRIMKAQGLGGSIVFIA 557 (681)
T ss_pred CCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCcEEEEEC
Confidence 8999988410 023556666777766 68887654
No 365
>TIGR02819 fdhA_non_GSH formaldehyde dehydrogenase, glutathione-independent. Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent.
Probab=85.71 E-value=3.3 Score=39.26 Aligned_cols=96 Identities=16% Similarity=0.023 Sum_probs=54.7
Q ss_pred CCCCeEEEEcCCCChHHHH---HHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEec---cccc-cCCCCcCCCC
Q 022962 120 NSNLKLVDVGTGAGLPGLV---LAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRG---RAET-LGKDVSFREQ 192 (289)
Q Consensus 120 ~~~~~VLDiGcG~G~~~l~---la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~---d~~~-~~~~~~~~~~ 192 (289)
.++.+||=.|+ |.+++. +|+......|+.+|.+++.++.+++ +|.+ .+... +..+ +... .....
T Consensus 184 ~~g~~VlV~G~--G~iG~~aiqlAk~~Ga~~vi~~d~~~~r~~~a~~----~Ga~--~v~~~~~~~~~~~v~~~-~~~~g 254 (393)
T TIGR02819 184 GPGSTVYIAGA--GPVGLAAAASAQLLGAAVVIVGDLNPARLAQARS----FGCE--TVDLSKDATLPEQIEQI-LGEPE 254 (393)
T ss_pred CCCCEEEEECC--CHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHH----cCCe--EEecCCcccHHHHHHHH-cCCCC
Confidence 34777776666 455544 5555544457778998877776655 4553 12211 1111 1100 01235
Q ss_pred ceEEEEcCccc------------HHHHHHHHccccccCeEEEEE
Q 022962 193 YDVAVARAVAE------------MRILAEYCLPLVRVGGLFVAA 224 (289)
Q Consensus 193 fD~V~sn~~~~------------~~~ll~~~~~~LkpgG~l~~~ 224 (289)
+|+|+-..-.. ....++.+..++++||++++.
T Consensus 255 ~Dvvid~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~i~~~ 298 (393)
T TIGR02819 255 VDCAVDCVGFEARGHGHDGKKEAPATVLNSLMEVTRVGGAIGIP 298 (393)
T ss_pred CcEEEECCCCccccccccccccchHHHHHHHHHHhhCCCEEEEe
Confidence 89988532111 124677778899999999874
No 366
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=85.52 E-value=8 Score=34.87 Aligned_cols=92 Identities=10% Similarity=0.102 Sum_probs=54.5
Q ss_pred eEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHc--------C----------CCCEEEEeccccccCC
Q 022962 124 KLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLT--------Q----------LLNVQIVRGRAETLGK 185 (289)
Q Consensus 124 ~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~--------~----------l~ni~~~~~d~~~~~~ 185 (289)
+|.=||+|+=..++.......+.+|+++|.+++.++.+++.++.+ . ..++++ ..|..+..
T Consensus 5 kIaViGaG~mG~~iA~~la~~G~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-~~d~~~a~- 82 (287)
T PRK08293 5 NVTVAGAGVLGSQIAFQTAFHGFDVTIYDISDEALEKAKERIAKLADRYVRDLEATKEAPAEAALNRITL-TTDLAEAV- 82 (287)
T ss_pred EEEEECCCHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhHHHHHcCeEE-eCCHHHHh-
Confidence 577778764333333322334679999999999988887654221 1 123432 23333211
Q ss_pred CCcCCCCceEEEEcCccc---HHHHHHHHccccccCeEEE
Q 022962 186 DVSFREQYDVAVARAVAE---MRILAEYCLPLVRVGGLFV 222 (289)
Q Consensus 186 ~~~~~~~fD~V~sn~~~~---~~~ll~~~~~~LkpgG~l~ 222 (289)
...|+|+.....+ ...+++++...++++-.+.
T Consensus 83 -----~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~ 117 (287)
T PRK08293 83 -----KDADLVIEAVPEDPEIKGDFYEELAKVAPEKTIFA 117 (287)
T ss_pred -----cCCCEEEEeccCCHHHHHHHHHHHHhhCCCCCEEE
Confidence 3469988764433 4677788888887776553
No 367
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=85.50 E-value=11 Score=36.05 Aligned_cols=86 Identities=13% Similarity=0.127 Sum_probs=51.7
Q ss_pred CCCeEEEEcCCCChHHHHHHHH--CCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCcCCCCceEEEE
Q 022962 121 SNLKLVDVGTGAGLPGLVLAIA--CPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVA 198 (289)
Q Consensus 121 ~~~~VLDiGcG~G~~~l~la~~--~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~~~~~fD~V~s 198 (289)
.+.+|+=+|+|. +|..+|+. .-+.+|+++|.++.....+. ..|. .+. +.++.. ...|+|++
T Consensus 194 ~Gk~VvViG~G~--IG~~vA~~ak~~Ga~ViV~d~dp~r~~~A~----~~G~---~v~--~leeal------~~aDVVIt 256 (406)
T TIGR00936 194 AGKTVVVAGYGW--CGKGIAMRARGMGARVIVTEVDPIRALEAA----MDGF---RVM--TMEEAA------KIGDIFIT 256 (406)
T ss_pred CcCEEEEECCCH--HHHHHHHHHhhCcCEEEEEeCChhhHHHHH----hcCC---EeC--CHHHHH------hcCCEEEE
Confidence 488999999886 44444432 23679999999986543332 2343 222 223321 34699886
Q ss_pred cCcccHHHHH-HHHccccccCeEEEEEE
Q 022962 199 RAVAEMRILA-EYCLPLVRVGGLFVAAK 225 (289)
Q Consensus 199 n~~~~~~~ll-~~~~~~LkpgG~l~~~~ 225 (289)
.. .. ..++ .+....+|+|++++..-
T Consensus 257 aT-G~-~~vI~~~~~~~mK~GailiN~G 282 (406)
T TIGR00936 257 AT-GN-KDVIRGEHFENMKDGAIVANIG 282 (406)
T ss_pred CC-CC-HHHHHHHHHhcCCCCcEEEEEC
Confidence 43 22 3344 34778899999987643
No 368
>cd08293 PTGR2 Prostaglandin reductase. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid
Probab=85.43 E-value=4.4 Score=36.99 Aligned_cols=94 Identities=12% Similarity=0.098 Sum_probs=55.8
Q ss_pred CeEEEEcC--CCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEe-ccccc-cCCCCcCCCCceEEEE
Q 022962 123 LKLVDVGT--GAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVR-GRAET-LGKDVSFREQYDVAVA 198 (289)
Q Consensus 123 ~~VLDiGc--G~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~-~d~~~-~~~~~~~~~~fD~V~s 198 (289)
.+||=.|. |.|..++.+|+.....+|++++.+++..+.+++ .+|.+.+-... .+..+ +.. ..++.+|+|+-
T Consensus 156 ~~VlI~ga~g~vG~~aiqlAk~~G~~~Vi~~~~s~~~~~~~~~---~lGa~~vi~~~~~~~~~~i~~--~~~~gvd~vid 230 (345)
T cd08293 156 QTMVVSGAAGACGSLAGQIGRLLGCSRVVGICGSDEKCQLLKS---ELGFDAAINYKTDNVAERLRE--LCPEGVDVYFD 230 (345)
T ss_pred CEEEEECCCcHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHH---hcCCcEEEECCCCCHHHHHHH--HCCCCceEEEE
Confidence 78888886 455566667776533389999999877665544 25654321111 11111 110 01246999985
Q ss_pred cCcccHHHHHHHHccccccCeEEEEE
Q 022962 199 RAVAEMRILAEYCLPLVRVGGLFVAA 224 (289)
Q Consensus 199 n~~~~~~~ll~~~~~~LkpgG~l~~~ 224 (289)
..-.. .+..+.+.|+++|+++..
T Consensus 231 ~~g~~---~~~~~~~~l~~~G~iv~~ 253 (345)
T cd08293 231 NVGGE---ISDTVISQMNENSHIILC 253 (345)
T ss_pred CCCcH---HHHHHHHHhccCCEEEEE
Confidence 43221 246677899999999864
No 369
>cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins. Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an
Probab=85.34 E-value=7.4 Score=35.18 Aligned_cols=93 Identities=20% Similarity=0.173 Sum_probs=55.7
Q ss_pred CCCeEEEEcCC-CChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCcCCCCceEEEEc
Q 022962 121 SNLKLVDVGTG-AGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVAR 199 (289)
Q Consensus 121 ~~~~VLDiGcG-~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~~~~~fD~V~sn 199 (289)
++.+||-.|+| .|..++.+|+.. +.+|++++.+++..+.+++ .+.+.+ +..+-.+.... ..+.+|+++..
T Consensus 162 ~~~~vlI~g~g~iG~~~~~~a~~~-G~~v~~~~~~~~~~~~~~~----~g~~~~--~~~~~~~~~~~--~~~~~d~vi~~ 232 (330)
T cd08245 162 PGERVAVLGIGGLGHLAVQYARAM-GFETVAITRSPDKRELARK----LGADEV--VDSGAELDEQA--AAGGADVILVT 232 (330)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHH----hCCcEE--eccCCcchHHh--ccCCCCEEEEC
Confidence 47789999886 444444555554 5689999999988766633 343221 11111111000 11458999865
Q ss_pred CcccHHHHHHHHccccccCeEEEEE
Q 022962 200 AVAEMRILAEYCLPLVRVGGLFVAA 224 (289)
Q Consensus 200 ~~~~~~~ll~~~~~~LkpgG~l~~~ 224 (289)
... ...+..+.+.|+++|.++..
T Consensus 233 ~~~--~~~~~~~~~~l~~~G~~i~~ 255 (330)
T cd08245 233 VVS--GAAAEAALGGLRRGGRIVLV 255 (330)
T ss_pred CCc--HHHHHHHHHhcccCCEEEEE
Confidence 322 23566777889999998865
No 370
>COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=85.32 E-value=2.1 Score=40.56 Aligned_cols=103 Identities=21% Similarity=0.233 Sum_probs=59.9
Q ss_pred CeEEEEcCCCChHHHHHHHHC--CCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccc----------cCCCCcC-
Q 022962 123 LKLVDVGTGAGLPGLVLAIAC--PDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAET----------LGKDVSF- 189 (289)
Q Consensus 123 ~~VLDiGcG~G~~~l~la~~~--p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~----------~~~~~~~- 189 (289)
.+|-=+| -|+.|+.+|..+ .+.+|+|+|+++..++..+. | ...+..-+.++ +....++
T Consensus 10 ~~I~ViG--LGYVGLPlA~~fA~~G~~ViG~DIn~~~Vd~ln~-----G--~~~i~e~~~~~~v~~~v~~g~lraTtd~~ 80 (436)
T COG0677 10 ATIGVIG--LGYVGLPLAAAFASAGFKVIGVDINQKKVDKLNR-----G--ESYIEEPDLDEVVKEAVESGKLRATTDPE 80 (436)
T ss_pred eEEEEEc--cccccHHHHHHHHHcCCceEeEeCCHHHHHHHhC-----C--cceeecCcHHHHHHHHHhcCCceEecChh
Confidence 4555554 457777777654 46899999999998877654 2 12222222221 0000000
Q ss_pred -CCCceEEEEc-C----------cccHHHHHHHHccccccCeEEEEEEc--CCcHHHHH
Q 022962 190 -REQYDVAVAR-A----------VAEMRILAEYCLPLVRVGGLFVAAKG--HDPQEEVK 234 (289)
Q Consensus 190 -~~~fD~V~sn-~----------~~~~~~ll~~~~~~LkpgG~l~~~~g--~~~~~ei~ 234 (289)
-...|+++.. . +.-.....+.+.+.|++|-..++++- +...+++.
T Consensus 81 ~l~~~dv~iI~VPTPl~~~~~pDls~v~~aa~sIa~~L~kG~LVIlEST~~PGTTe~v~ 139 (436)
T COG0677 81 ELKECDVFIICVPTPLKKYREPDLSYVESAARSIAPVLKKGDLVILESTTPPGTTEEVV 139 (436)
T ss_pred hcccCCEEEEEecCCcCCCCCCChHHHHHHHHHHHHhcCCCCEEEEecCCCCCcHHHHH
Confidence 0145665533 1 23457888899999999999888763 34455543
No 371
>PRK12939 short chain dehydrogenase; Provisional
Probab=85.26 E-value=6.1 Score=34.00 Aligned_cols=77 Identities=16% Similarity=0.058 Sum_probs=50.8
Q ss_pred CCeEEEEcCCCChHHHHHHHHC--CCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCC-cC------CCC
Q 022962 122 NLKLVDVGTGAGLPGLVLAIAC--PDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDV-SF------REQ 192 (289)
Q Consensus 122 ~~~VLDiGcG~G~~~l~la~~~--p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~-~~------~~~ 192 (289)
+.++|=.|+ +|.+|..+++.+ .+.+|++++.+++.+....+..+..+ .++.++..|+.+...-. .+ -++
T Consensus 7 ~~~vlItGa-~g~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~ 84 (250)
T PRK12939 7 GKRALVTGA-ARGLGAAFAEALAEAGATVAFNDGLAAEARELAAALEAAG-GRAHAIAADLADPASVQRFFDAAAAALGG 84 (250)
T ss_pred CCEEEEeCC-CChHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcC-CcEEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence 678887776 556788887654 46789999998877665555444433 36888889987643100 00 036
Q ss_pred ceEEEEcC
Q 022962 193 YDVAVARA 200 (289)
Q Consensus 193 fD~V~sn~ 200 (289)
.|.|+.++
T Consensus 85 id~vi~~a 92 (250)
T PRK12939 85 LDGLVNNA 92 (250)
T ss_pred CCEEEECC
Confidence 89999873
No 372
>PF10237 N6-adenineMlase: Probable N6-adenine methyltransferase; InterPro: IPR019369 This family of proteins, which are of approximately 200 residues in length, contain a highly conserved Glu-Phe-Trp (QFW) motif close to the N terminus and an Asp/Asn-Pro-Pro-Tyr/Phe motif in the centre. This latter motif is characteristic of N-6 adenine-specific DNA methylases and could be involved in substrate binding or in the catalytic activity (, ).
Probab=85.25 E-value=9.1 Score=31.78 Aligned_cols=95 Identities=17% Similarity=0.135 Sum_probs=60.1
Q ss_pred CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCC-CCcCCCCceEEEEcC
Q 022962 122 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGK-DVSFREQYDVAVARA 200 (289)
Q Consensus 122 ~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~-~~~~~~~fD~V~sn~ 200 (289)
+.+|+-|||=|-...+.- ...+..+++..|.+..- ...+- + .|+.-|...... +..+.++||+|++..
T Consensus 26 ~~~iaclstPsl~~~l~~-~~~~~~~~~Lle~D~RF--------~~~~~-~-~F~fyD~~~p~~~~~~l~~~~d~vv~DP 94 (162)
T PF10237_consen 26 DTRIACLSTPSLYEALKK-ESKPRIQSFLLEYDRRF--------EQFGG-D-EFVFYDYNEPEELPEELKGKFDVVVIDP 94 (162)
T ss_pred CCEEEEEeCcHHHHHHHh-hcCCCccEEEEeecchH--------HhcCC-c-ceEECCCCChhhhhhhcCCCceEEEECC
Confidence 579999999665543332 12367899999998743 22332 2 355555554211 112357999999985
Q ss_pred c----ccHHHHHHHHccccccCeEEEEEEcC
Q 022962 201 V----AEMRILAEYCLPLVRVGGLFVAAKGH 227 (289)
Q Consensus 201 ~----~~~~~ll~~~~~~LkpgG~l~~~~g~ 227 (289)
. +-+....+.+.-++++++.+++..|.
T Consensus 95 PFl~~ec~~k~a~ti~~L~k~~~kii~~Tg~ 125 (162)
T PF10237_consen 95 PFLSEECLTKTAETIRLLLKPGGKIILCTGE 125 (162)
T ss_pred CCCCHHHHHHHHHHHHHHhCccceEEEecHH
Confidence 2 22345566667777889999987774
No 373
>PRK06701 short chain dehydrogenase; Provisional
Probab=85.07 E-value=4.9 Score=36.13 Aligned_cols=102 Identities=12% Similarity=0.129 Sum_probs=60.5
Q ss_pred CCeEEEEcCCCChHHHHHHHHC--CCCEEEEEeCChH-HHHHHHHHHHHcCCCCEEEEeccccccCCCC-cC------CC
Q 022962 122 NLKLVDVGTGAGLPGLVLAIAC--PDWKVTLLESMNK-RCVFLEHAVSLTQLLNVQIVRGRAETLGKDV-SF------RE 191 (289)
Q Consensus 122 ~~~VLDiGcG~G~~~l~la~~~--p~~~V~~iD~s~~-~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~-~~------~~ 191 (289)
+.++|=.|+++| +|..++..+ .+.+|+.++.+.. ..+......+..+. ++.++..|+.+...-. .+ -.
T Consensus 46 ~k~iLItGasgg-IG~~la~~l~~~G~~V~l~~r~~~~~~~~~~~~~~~~~~-~~~~~~~Dl~~~~~~~~~~~~i~~~~~ 123 (290)
T PRK06701 46 GKVALITGGDSG-IGRAVAVLFAKEGADIAIVYLDEHEDANETKQRVEKEGV-KCLLIPGDVSDEAFCKDAVEETVRELG 123 (290)
T ss_pred CCEEEEeCCCcH-HHHHHHHHHHHCCCEEEEEeCCcchHHHHHHHHHHhcCC-eEEEEEccCCCHHHHHHHHHHHHHHcC
Confidence 678999997555 577777653 4689999988753 23333333333332 5778888886532110 00 13
Q ss_pred CceEEEEcCc------------------------ccHHHHHHHHccccccCeEEEEEE
Q 022962 192 QYDVAVARAV------------------------AEMRILAEYCLPLVRVGGLFVAAK 225 (289)
Q Consensus 192 ~fD~V~sn~~------------------------~~~~~ll~~~~~~LkpgG~l~~~~ 225 (289)
..|+|+.++- ...-.+++.+.+.++++|.+++..
T Consensus 124 ~iD~lI~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~a~~~~~~~~g~iV~is 181 (290)
T PRK06701 124 RLDILVNNAAFQYPQQSLEDITAEQLDKTFKTNIYSYFHMTKAALPHLKQGSAIINTG 181 (290)
T ss_pred CCCEEEECCcccCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHhhCCeEEEEe
Confidence 5799987731 012344455566667788888654
No 374
>TIGR00497 hsdM type I restriction system adenine methylase (hsdM). Function: methylation of specific adenine residues; required for both restriction and modification activities. The ECOR124/3 I enzyme recognizes 5'GAA(N7)RTCG. for E.coli see (J. Mol. Biol. 257: 960-969 (1996)).
Probab=85.05 E-value=27 Score=34.32 Aligned_cols=104 Identities=13% Similarity=0.019 Sum_probs=65.1
Q ss_pred CCCeEEEEcCCCChHHHHHHHHC----CCCEEEEEeCChHHHHHHHHHHHHcCCC--CEEEEeccccccCCCCcCCCCce
Q 022962 121 SNLKLVDVGTGAGLPGLVLAIAC----PDWKVTLLESMNKRCVFLEHAVSLTQLL--NVQIVRGRAETLGKDVSFREQYD 194 (289)
Q Consensus 121 ~~~~VLDiGcG~G~~~l~la~~~----p~~~V~~iD~s~~~l~~a~~~~~~~~l~--ni~~~~~d~~~~~~~~~~~~~fD 194 (289)
++..|.|..||||...+...... ....++|-|....+...+..|..-.+.. +....++|-..-+.. ....+||
T Consensus 217 p~~~~~Dp~~Gsg~~L~~~~~~~~~~qe~~~~~gqe~~~~~~~~a~mnm~l~~~~~~t~~~~~~dtl~~~d~-~~~~~~D 295 (501)
T TIGR00497 217 TVDDVYDMACGSGSLLLQVIKVLGEKTSLVSYYGQEINHTTYNLCRMNMILHNIDYANFNIINADTLTTKEW-ENENGFE 295 (501)
T ss_pred CCCcccccccchHHHHHHHHHHhcccccceeEEEEeCchHHHHHHHHHHHHcCCCccccCcccCCcCCCccc-cccccCC
Confidence 45789999999998766543322 1256999999999999999886555442 233333332221100 0124699
Q ss_pred EEEEcCc----------c-------------------cHHHHHHHHccccccCeEEEEEE
Q 022962 195 VAVARAV----------A-------------------EMRILAEYCLPLVRVGGLFVAAK 225 (289)
Q Consensus 195 ~V~sn~~----------~-------------------~~~~ll~~~~~~LkpgG~l~~~~ 225 (289)
.|++|.. + .=..++..+...|++||+..+..
T Consensus 296 ~v~~NpPf~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~afi~h~~~~L~~gG~~aiI~ 355 (501)
T TIGR00497 296 VVVSNPPYSISWAGDKKSNLVSDVRFKDAGTLAPNSKADLAFVLHALYVLGQEGTAAIVC 355 (501)
T ss_pred EEeecCCcccccccccccccccccchhcccCCCCCchhhHHHHHHHHHhcCCCCeEEEEe
Confidence 9999830 0 00245556777899999866554
No 375
>cd08236 sugar_DH NAD(P)-dependent sugar dehydrogenases. This group contains proteins identified as sorbitol dehydrogenases and other sugar dehydrogenases of the medium-chain dehydrogenase/reductase family (MDR), which includes zinc-dependent alcohol dehydrogenase and related proteins. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Related proteins include threonine dehydrogenase, formaldehyde dehydrogenase, and butanediol dehydrogenase. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast
Probab=84.85 E-value=2.7 Score=38.39 Aligned_cols=95 Identities=17% Similarity=0.159 Sum_probs=56.0
Q ss_pred CCCeEEEEcCCC-ChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEecc---ccccCCCCcCCCCceEE
Q 022962 121 SNLKLVDVGTGA-GLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGR---AETLGKDVSFREQYDVA 196 (289)
Q Consensus 121 ~~~~VLDiGcG~-G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d---~~~~~~~~~~~~~fD~V 196 (289)
++.+||-.|+|+ |...+.+|+......|++++.+++..+.++ ..+... ++..+ ..++... .....+|+|
T Consensus 159 ~~~~vlI~g~g~~g~~~~~lA~~~G~~~v~~~~~~~~~~~~l~----~~g~~~--~~~~~~~~~~~~~~~-~~~~~~d~v 231 (343)
T cd08236 159 LGDTVVVIGAGTIGLLAIQWLKILGAKRVIAVDIDDEKLAVAR----ELGADD--TINPKEEDVEKVREL-TEGRGADLV 231 (343)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHH----HcCCCE--EecCccccHHHHHHH-hCCCCCCEE
Confidence 477899998755 555566676654334999998887766553 344422 22111 1111100 012359999
Q ss_pred EEcCcccHHHHHHHHccccccCeEEEEE
Q 022962 197 VARAVAEMRILAEYCLPLVRVGGLFVAA 224 (289)
Q Consensus 197 ~sn~~~~~~~ll~~~~~~LkpgG~l~~~ 224 (289)
+...-. ...+..+.+.|+++|+++..
T Consensus 232 ld~~g~--~~~~~~~~~~l~~~G~~v~~ 257 (343)
T cd08236 232 IEAAGS--PATIEQALALARPGGKVVLV 257 (343)
T ss_pred EECCCC--HHHHHHHHHHhhcCCEEEEE
Confidence 965322 34566778889999998764
No 376
>KOG2360 consensus Proliferation-associated nucleolar protein (NOL1) [Cell cycle control, cell division, chromosome partitioning]
Probab=84.79 E-value=1.7 Score=40.85 Aligned_cols=66 Identities=18% Similarity=0.153 Sum_probs=57.1
Q ss_pred CCCCCCeEEEEcCCCChHHHHHHHHC-CCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEecccccc
Q 022962 118 SCNSNLKLVDVGTGAGLPGLVLAIAC-PDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETL 183 (289)
Q Consensus 118 ~~~~~~~VLDiGcG~G~~~l~la~~~-p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~ 183 (289)
+..+|.+|+|.+|-.|.-+.-+|... +..++.|.|.+.+..+..+...+..|..+++...+|....
T Consensus 210 ~p~~g~~v~d~caapg~KTsH~a~i~~n~gki~afe~d~~r~~tl~~~l~~ag~~~~~~~~~df~~t 276 (413)
T KOG2360|consen 210 DPRPGSRVIDTCAAPGNKTSHLAAIMRNQGKIYAFERDAKRAATLRKLLKIAGVSIVESVEGDFLNT 276 (413)
T ss_pred CCCCCCceeeeccccccchhhHHHHhhccCCcchhhhhhHHHHHHHHHHHHcCCCccccccccccCC
Confidence 34568999999999999998888654 4789999999999999999999999988888888888774
No 377
>PRK07454 short chain dehydrogenase; Provisional
Probab=84.78 E-value=6.8 Score=33.69 Aligned_cols=78 Identities=15% Similarity=0.096 Sum_probs=51.7
Q ss_pred CCCeEEEEcCCCChHHHHHHHHC--CCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCC-cC------CC
Q 022962 121 SNLKLVDVGTGAGLPGLVLAIAC--PDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDV-SF------RE 191 (289)
Q Consensus 121 ~~~~VLDiGcG~G~~~l~la~~~--p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~-~~------~~ 191 (289)
+..++|=.|+ +|.+|..+++.+ .+.+|++++.+++......+..+..+ .++.++.+|+.+...-. .. -+
T Consensus 5 ~~k~vlItG~-sg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 82 (241)
T PRK07454 5 SMPRALITGA-SSGIGKATALAFAKAGWDLALVARSQDALEALAAELRSTG-VKAAAYSIDLSNPEAIAPGIAELLEQFG 82 (241)
T ss_pred CCCEEEEeCC-CchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhCC-CcEEEEEccCCCHHHHHHHHHHHHHHcC
Confidence 3568899995 666788877654 46799999999876655555444433 25888889987643100 00 13
Q ss_pred CceEEEEcC
Q 022962 192 QYDVAVARA 200 (289)
Q Consensus 192 ~fD~V~sn~ 200 (289)
+.|.++.++
T Consensus 83 ~id~lv~~a 91 (241)
T PRK07454 83 CPDVLINNA 91 (241)
T ss_pred CCCEEEECC
Confidence 579999874
No 378
>PRK07904 short chain dehydrogenase; Provisional
Probab=84.45 E-value=5.8 Score=34.80 Aligned_cols=78 Identities=14% Similarity=0.110 Sum_probs=52.3
Q ss_pred CCCeEEEEcCCCChHHHHHHHHC---CCCEEEEEeCChHH-HHHHHHHHHHcCCCCEEEEeccccccCCC-----CcC-C
Q 022962 121 SNLKLVDVGTGAGLPGLVLAIAC---PDWKVTLLESMNKR-CVFLEHAVSLTQLLNVQIVRGRAETLGKD-----VSF-R 190 (289)
Q Consensus 121 ~~~~VLDiGcG~G~~~l~la~~~---p~~~V~~iD~s~~~-l~~a~~~~~~~~l~ni~~~~~d~~~~~~~-----~~~-~ 190 (289)
++.+||=.|+++| +|..+|+.+ .+.+|++++.++.. ++.+.+..+..+..+++++..|+.+...- ... .
T Consensus 7 ~~~~vlItGas~g-iG~~la~~l~~~gg~~V~~~~r~~~~~~~~~~~~l~~~~~~~v~~~~~D~~~~~~~~~~~~~~~~~ 85 (253)
T PRK07904 7 NPQTILLLGGTSE-IGLAICERYLKNAPARVVLAALPDDPRRDAAVAQMKAAGASSVEVIDFDALDTDSHPKVIDAAFAG 85 (253)
T ss_pred CCcEEEEEcCCcH-HHHHHHHHHHhcCCCeEEEEeCCcchhHHHHHHHHHhcCCCceEEEEecCCChHHHHHHHHHHHhc
Confidence 4678999999655 688888653 24799999998764 55555555555544688999998764310 000 1
Q ss_pred CCceEEEEc
Q 022962 191 EQYDVAVAR 199 (289)
Q Consensus 191 ~~fD~V~sn 199 (289)
+..|+++.+
T Consensus 86 g~id~li~~ 94 (253)
T PRK07904 86 GDVDVAIVA 94 (253)
T ss_pred CCCCEEEEe
Confidence 468988876
No 379
>PRK09291 short chain dehydrogenase; Provisional
Probab=84.03 E-value=4.3 Score=35.25 Aligned_cols=76 Identities=14% Similarity=0.118 Sum_probs=50.5
Q ss_pred CeEEEEcCCCChHHHHHHHHC--CCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCC-cCCCCceEEEEc
Q 022962 123 LKLVDVGTGAGLPGLVLAIAC--PDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDV-SFREQYDVAVAR 199 (289)
Q Consensus 123 ~~VLDiGcG~G~~~l~la~~~--p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~-~~~~~fD~V~sn 199 (289)
.+||=.|+++| +|..+++.+ .+.+|++++.++......+......+. ++.++.+|+.+...-. ......|.|+.|
T Consensus 3 ~~vlVtGasg~-iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~D~~~~~~~~~~~~~~id~vi~~ 80 (257)
T PRK09291 3 KTILITGAGSG-FGREVALRLARKGHNVIAGVQIAPQVTALRAEAARRGL-ALRVEKLDLTDAIDRAQAAEWDVDVLLNN 80 (257)
T ss_pred CEEEEeCCCCH-HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCC-cceEEEeeCCCHHHHHHHhcCCCCEEEEC
Confidence 47888888554 577776543 468999999988766655555555443 5888888887642110 112478999987
Q ss_pred C
Q 022962 200 A 200 (289)
Q Consensus 200 ~ 200 (289)
+
T Consensus 81 a 81 (257)
T PRK09291 81 A 81 (257)
T ss_pred C
Confidence 4
No 380
>cd08265 Zn_ADH3 Alcohol dehydrogenases of the MDR family. This group resembles the zinc-dependent alcohol dehydrogenase and has the catalytic and structural zinc-binding sites characteristic of this group. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanedi
Probab=84.00 E-value=6.4 Score=36.90 Aligned_cols=97 Identities=19% Similarity=0.047 Sum_probs=55.2
Q ss_pred CCCCeEEEEcCCCChHHHH---HHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEec----cc-cccCCCCcCCC
Q 022962 120 NSNLKLVDVGTGAGLPGLV---LAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRG----RA-ETLGKDVSFRE 191 (289)
Q Consensus 120 ~~~~~VLDiGcG~G~~~l~---la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~----d~-~~~~~~~~~~~ 191 (289)
+.+.+||=.|+ |.+|.. +|+..+..+|++++.+++..+.++ ++|.+.+--.+. +. ..+... ....
T Consensus 202 ~~g~~VlV~g~--g~vG~~ai~lA~~~G~~~vi~~~~~~~~~~~~~----~~g~~~~v~~~~~~~~~~~~~v~~~-~~g~ 274 (384)
T cd08265 202 RPGAYVVVYGA--GPIGLAAIALAKAAGASKVIAFEISEERRNLAK----EMGADYVFNPTKMRDCLSGEKVMEV-TKGW 274 (384)
T ss_pred CCCCEEEEECC--CHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHH----HcCCCEEEcccccccccHHHHHHHh-cCCC
Confidence 34777877765 555554 455554338999999887655444 456532211111 11 001000 1124
Q ss_pred CceEEEEcCcccHHHHHHHHccccccCeEEEEE
Q 022962 192 QYDVAVARAVAEMRILAEYCLPLVRVGGLFVAA 224 (289)
Q Consensus 192 ~fD~V~sn~~~~~~~ll~~~~~~LkpgG~l~~~ 224 (289)
.+|+|+.. .......+..+.+.|+++|+++..
T Consensus 275 gvDvvld~-~g~~~~~~~~~~~~l~~~G~~v~~ 306 (384)
T cd08265 275 GADIQVEA-AGAPPATIPQMEKSIAINGKIVYI 306 (384)
T ss_pred CCCEEEEC-CCCcHHHHHHHHHHHHcCCEEEEE
Confidence 69999865 333345677778889999999864
No 381
>COG4627 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=83.90 E-value=0.59 Score=38.56 Aligned_cols=36 Identities=22% Similarity=0.222 Sum_probs=29.2
Q ss_pred CCCceEEEEcC------cccHHHHHHHHccccccCeEEEEEE
Q 022962 190 REQYDVAVARA------VAEMRILAEYCLPLVRVGGLFVAAK 225 (289)
Q Consensus 190 ~~~fD~V~sn~------~~~~~~ll~~~~~~LkpgG~l~~~~ 225 (289)
+++.|+|.+.. .+.-..++++|+++|||||++-+..
T Consensus 45 dns~d~iyaeHvlEHlt~~Eg~~alkechr~Lrp~G~LriAv 86 (185)
T COG4627 45 DNSVDAIYAEHVLEHLTYDEGTSALKECHRFLRPGGKLRIAV 86 (185)
T ss_pred CcchHHHHHHHHHHHHhHHHHHHHHHHHHHHhCcCcEEEEEc
Confidence 47899998874 3455788999999999999998754
No 382
>TIGR01963 PHB_DH 3-hydroxybutyrate dehydrogenase. This model represents a subfamily of the short chain dehydrogenases. Characterized members so far as 3-hydroxybutyrate dehydrogenases and are found in species that accumulate ester polmers called polyhydroxyalkanoic acids (PHAs) under certain conditions. Several members of the family are from species not known to accumulate PHAs, including Oceanobacillus iheyensis and Bacillus subtilis. However, polymer formation is not required for there be a role for 3-hydroxybutyrate dehydrogenase; it may be members of this family have the same function in those species.
Probab=83.71 E-value=5.3 Score=34.51 Aligned_cols=75 Identities=15% Similarity=0.040 Sum_probs=48.8
Q ss_pred eEEEEcCCCChHHHHHHHHC--CCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccC-------CCCcCCCCce
Q 022962 124 KLVDVGTGAGLPGLVLAIAC--PDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLG-------KDVSFREQYD 194 (289)
Q Consensus 124 ~VLDiGcG~G~~~l~la~~~--p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~-------~~~~~~~~fD 194 (289)
++|=.| |+|.+|..+++.+ .+.+|++++.++...+.+....+..+ .++.++.+|+.+.. .-...-...|
T Consensus 3 ~vlItG-a~g~lG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~d 80 (255)
T TIGR01963 3 TALVTG-AASGIGLAIALALAAAGANVVVNDLGEAGAEAAAKVATDAG-GSVIYLVADVTKEDEIADMIAAAAAEFGGLD 80 (255)
T ss_pred EEEEcC-CcchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC-CceEEEECCCCCHHHHHHHHHHHHHhcCCCC
Confidence 566667 5567788887653 46799999999876665555444444 25888888887643 1000013579
Q ss_pred EEEEcC
Q 022962 195 VAVARA 200 (289)
Q Consensus 195 ~V~sn~ 200 (289)
.|+.++
T Consensus 81 ~vi~~a 86 (255)
T TIGR01963 81 ILVNNA 86 (255)
T ss_pred EEEECC
Confidence 999874
No 383
>PRK07326 short chain dehydrogenase; Provisional
Probab=83.64 E-value=5.7 Score=33.96 Aligned_cols=75 Identities=16% Similarity=0.044 Sum_probs=48.8
Q ss_pred CCeEEEEcCCCChHHHHHHHHC--CCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCC-cC------CCC
Q 022962 122 NLKLVDVGTGAGLPGLVLAIAC--PDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDV-SF------REQ 192 (289)
Q Consensus 122 ~~~VLDiGcG~G~~~l~la~~~--p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~-~~------~~~ 192 (289)
+.+||=.|. +|.+|..+++.+ .+.+|++++.++.....+....... .++.++.+|+.+...-. .. -+.
T Consensus 6 ~~~ilItGa-tg~iG~~la~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 82 (237)
T PRK07326 6 GKVALITGG-SKGIGFAIAEALLAEGYKVAITARDQKELEEAAAELNNK--GNVLGLAADVRDEADVQRAVDAIVAAFGG 82 (237)
T ss_pred CCEEEEECC-CCcHHHHHHHHHHHCCCEEEEeeCCHHHHHHHHHHHhcc--CcEEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence 578999995 667788887653 3679999999887665544433322 35888888877542100 00 136
Q ss_pred ceEEEEc
Q 022962 193 YDVAVAR 199 (289)
Q Consensus 193 fD~V~sn 199 (289)
+|.|+.+
T Consensus 83 ~d~vi~~ 89 (237)
T PRK07326 83 LDVLIAN 89 (237)
T ss_pred CCEEEEC
Confidence 8999976
No 384
>COG2961 ComJ Protein involved in catabolism of external DNA [General function prediction only]
Probab=83.62 E-value=29 Score=31.01 Aligned_cols=130 Identities=14% Similarity=0.118 Sum_probs=91.0
Q ss_pred EEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccC-CCCcCCCCceEEEEcC----
Q 022962 126 VDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLG-KDVSFREQYDVAVARA---- 200 (289)
Q Consensus 126 LDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~-~~~~~~~~fD~V~sn~---- 200 (289)
|+.=|||=.++-.+. .+.-++.++|+-++-...++.+.. +-.++++.++|-.... ......+.=-+|+...
T Consensus 93 l~~YpGSP~lA~~ll--R~qDRl~l~ELHp~D~~~L~~~f~--~d~~vrv~~~DG~~~l~a~LPP~erRglVLIDPPfE~ 168 (279)
T COG2961 93 LRYYPGSPLLARQLL--REQDRLVLTELHPSDAPLLRNNFA--GDRRVRVLRGDGFLALKAHLPPKERRGLVLIDPPFEL 168 (279)
T ss_pred cccCCCCHHHHHHHc--chhceeeeeecCccHHHHHHHHhC--CCcceEEEecCcHHHHhhhCCCCCcceEEEeCCCccc
Confidence 788888877655554 346799999999998888888766 3347999988865421 1101124567788773
Q ss_pred cccHHHHHHHHccccc--cCeEEEEEEcCCcHHHHHHHHHHHHHhCC-eEeEEeeeecCCCC
Q 022962 201 VAEMRILAEYCLPLVR--VGGLFVAAKGHDPQEEVKNSERAVQLMGA-SLLQLCSVESQSPF 259 (289)
Q Consensus 201 ~~~~~~ll~~~~~~Lk--pgG~l~~~~g~~~~~ei~~~~~~l~~~g~-~~~~~~~~~~~~~~ 259 (289)
-.++..+++.+...++ ++|...+..+....+++..+.+.++..|. ++..+.--..|+.+
T Consensus 169 ~~eY~rvv~~l~~~~kRf~~g~yaiWYPik~r~~~~~f~~~L~~~~i~kiL~iEL~VrP~~d 230 (279)
T COG2961 169 KDEYQRVVEALAEAYKRFATGTYAIWYPIKDRRQIRRFLRALEALGIRKILQIELAVRPDSD 230 (279)
T ss_pred ccHHHHHHHHHHHHHHhhcCceEEEEEeecchHHHHHHHHHHhhcCccceeeeEEEecCCCC
Confidence 2367777776666666 68888888888888999999999999998 56555543445443
No 385
>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.
Probab=83.52 E-value=3.3 Score=39.28 Aligned_cols=45 Identities=16% Similarity=0.254 Sum_probs=33.4
Q ss_pred CCCCCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHH
Q 022962 119 CNSNLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAV 165 (289)
Q Consensus 119 ~~~~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~ 165 (289)
+.++++||-|.+ +|+.++.+....| .+|++||+|+.....++-..
T Consensus 33 i~~~d~vl~ItS-aG~N~L~yL~~~P-~~I~aVDlNp~Q~aLleLKl 77 (380)
T PF11899_consen 33 IGPDDRVLTITS-AGCNALDYLLAGP-KRIHAVDLNPAQNALLELKL 77 (380)
T ss_pred CCCCCeEEEEcc-CCchHHHHHhcCC-ceEEEEeCCHHHHHHHHHHH
Confidence 445889999965 5666777765555 69999999998877766543
No 386
>PLN02350 phosphogluconate dehydrogenase (decarboxylating)
Probab=83.45 E-value=9.8 Score=37.39 Aligned_cols=116 Identities=10% Similarity=0.063 Sum_probs=68.7
Q ss_pred CCChHHHHHHHHC--CCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCcCCCCceEEEEcC--cccHHH
Q 022962 131 GAGLPGLVLAIAC--PDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARA--VAEMRI 206 (289)
Q Consensus 131 G~G~~~l~la~~~--p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~~~~~fD~V~sn~--~~~~~~ 206 (289)
|.|..|..+|... .+.+|+..|.+++..+...+.....|..++ ....++.++.... +..|+|++.- -...+.
T Consensus 13 GLG~MG~~mA~nL~~~G~~V~V~NRt~~k~~~l~~~~~~~Ga~~~-~~a~s~~e~v~~l---~~~dvIi~~v~~~~aV~~ 88 (493)
T PLN02350 13 GLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGNLPL-YGFKDPEDFVLSI---QKPRSVIILVKAGAPVDQ 88 (493)
T ss_pred eeHHHHHHHHHHHHhCCCeEEEECCCHHHHHHHHHhhhhcCCccc-ccCCCHHHHHhcC---CCCCEEEEECCCcHHHHH
Confidence 4456666666542 468999999998887655442222232222 1233444443210 2479888762 334566
Q ss_pred HHHHHccccccCeEEEEEEcCCcHHHHHHHHHHHHHhCCeEeEEe
Q 022962 207 LAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLLQLC 251 (289)
Q Consensus 207 ll~~~~~~LkpgG~l~~~~g~~~~~ei~~~~~~l~~~g~~~~~~~ 251 (289)
++..+...|++|-. ++-.+....++..+..+.++..|...++..
T Consensus 89 Vi~gl~~~l~~G~i-iID~sT~~~~~t~~~~~~l~~~Gi~fldap 132 (493)
T PLN02350 89 TIKALSEYMEPGDC-IIDGGNEWYENTERRIKEAAEKGLLYLGMG 132 (493)
T ss_pred HHHHHHhhcCCCCE-EEECCCCCHHHHHHHHHHHHHcCCeEEeCC
Confidence 66777777877654 455555555566666777888888766553
No 387
>PRK08339 short chain dehydrogenase; Provisional
Probab=83.39 E-value=6.7 Score=34.60 Aligned_cols=78 Identities=10% Similarity=0.041 Sum_probs=52.0
Q ss_pred CCeEEEEcCCCChHHHHHHHHC--CCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCc-C-----CCCc
Q 022962 122 NLKLVDVGTGAGLPGLVLAIAC--PDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVS-F-----REQY 193 (289)
Q Consensus 122 ~~~VLDiGcG~G~~~l~la~~~--p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~-~-----~~~f 193 (289)
+.++|=.|+++|+ |..+|+.+ .+.+|+.+|.+...++.+.+..+...-.++.++..|+.+...-.. . -+..
T Consensus 8 ~k~~lItGas~gI-G~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~i~~~~~~~~~~g~i 86 (263)
T PRK08339 8 GKLAFTTASSKGI-GFGVARVLARAGADVILLSRNEENLKKAREKIKSESNVDVSYIVADLTKREDLERTVKELKNIGEP 86 (263)
T ss_pred CCEEEEeCCCCcH-HHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhcCCceEEEEecCCCHHHHHHHHHHHHhhCCC
Confidence 6788989988774 77777653 468999999998877666555443322368888888876421100 0 1468
Q ss_pred eEEEEcC
Q 022962 194 DVAVARA 200 (289)
Q Consensus 194 D~V~sn~ 200 (289)
|+++.|+
T Consensus 87 D~lv~na 93 (263)
T PRK08339 87 DIFFFST 93 (263)
T ss_pred cEEEECC
Confidence 9998874
No 388
>PLN02989 cinnamyl-alcohol dehydrogenase family protein
Probab=83.38 E-value=3.6 Score=37.40 Aligned_cols=78 Identities=9% Similarity=0.026 Sum_probs=47.6
Q ss_pred CCeEEEEcCCCChHHHHHHHHC--CCCEEEEEeCChHHHHHHHHHHHHcCC-CCEEEEeccccccCCCCcCCCCceEEEE
Q 022962 122 NLKLVDVGTGAGLPGLVLAIAC--PDWKVTLLESMNKRCVFLEHAVSLTQL-LNVQIVRGRAETLGKDVSFREQYDVAVA 198 (289)
Q Consensus 122 ~~~VLDiGcG~G~~~l~la~~~--p~~~V~~iD~s~~~l~~a~~~~~~~~l-~ni~~~~~d~~~~~~~~~~~~~fD~V~s 198 (289)
+.+||=.| |+|.+|..++..+ .+.+|++++.+..............+. .+++++.+|+.+...-...-...|.|+.
T Consensus 5 ~k~vlVtG-~~G~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~d~vih 83 (325)
T PLN02989 5 GKVVCVTG-ASGYIASWIVKLLLFRGYTINATVRDPKDRKKTDHLLALDGAKERLKLFKADLLDEGSFELAIDGCETVFH 83 (325)
T ss_pred CCEEEEEC-CchHHHHHHHHHHHHCCCEEEEEEcCCcchhhHHHHHhccCCCCceEEEeCCCCCchHHHHHHcCCCEEEE
Confidence 67899988 5788898888653 457888887666543322221111122 3688899998775321111125799887
Q ss_pred cC
Q 022962 199 RA 200 (289)
Q Consensus 199 n~ 200 (289)
++
T Consensus 84 ~A 85 (325)
T PLN02989 84 TA 85 (325)
T ss_pred eC
Confidence 74
No 389
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=83.19 E-value=8.1 Score=35.28 Aligned_cols=103 Identities=17% Similarity=0.111 Sum_probs=59.3
Q ss_pred CeEEEEcCCC--ChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCC-----CEEEEeccccccCCCCcCCCCceE
Q 022962 123 LKLVDVGTGA--GLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLL-----NVQIVRGRAETLGKDVSFREQYDV 195 (289)
Q Consensus 123 ~~VLDiGcG~--G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~-----ni~~~~~d~~~~~~~~~~~~~fD~ 195 (289)
.+|+=+|+|. |.++-.|++. +..|+.++.+++.++..++ +.|+. ....+.....+ . ...+.||+
T Consensus 3 m~I~IiGaGaiG~~~a~~L~~~--G~~V~lv~r~~~~~~~i~~---~~Gl~i~~~g~~~~~~~~~~~--~--~~~~~~D~ 73 (305)
T PRK05708 3 MTWHILGAGSLGSLWACRLARA--GLPVRLILRDRQRLAAYQQ---AGGLTLVEQGQASLYAIPAET--A--DAAEPIHR 73 (305)
T ss_pred ceEEEECCCHHHHHHHHHHHhC--CCCeEEEEechHHHHHHhh---cCCeEEeeCCcceeeccCCCC--c--ccccccCE
Confidence 4688888883 4455555543 5689999998765554443 12221 10111100100 0 11257999
Q ss_pred EEEcCc-ccHHHHHHHHccccccCeEEEEEE-cCCcHHHHH
Q 022962 196 AVARAV-AEMRILAEYCLPLVRVGGLFVAAK-GHDPQEEVK 234 (289)
Q Consensus 196 V~sn~~-~~~~~ll~~~~~~LkpgG~l~~~~-g~~~~~ei~ 234 (289)
|+...- -+....++.+...+.++..++... |-...+.+.
T Consensus 74 viv~vK~~~~~~al~~l~~~l~~~t~vv~lQNGv~~~e~l~ 114 (305)
T PRK05708 74 LLLACKAYDAEPAVASLAHRLAPGAELLLLQNGLGSQDAVA 114 (305)
T ss_pred EEEECCHHhHHHHHHHHHhhCCCCCEEEEEeCCCCCHHHHH
Confidence 886532 246778888999999999887665 444444443
No 390
>COG0673 MviM Predicted dehydrogenases and related proteins [General function prediction only]
Probab=83.09 E-value=9.9 Score=34.70 Aligned_cols=113 Identities=19% Similarity=0.155 Sum_probs=67.0
Q ss_pred CCeEEEEcCCCChHHH---HHHHHCCC-CEEEEE-eCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCcCCCCceEE
Q 022962 122 NLKLVDVGTGAGLPGL---VLAIACPD-WKVTLL-ESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVA 196 (289)
Q Consensus 122 ~~~VLDiGcG~G~~~l---~la~~~p~-~~V~~i-D~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~~~~~fD~V 196 (289)
..+|.=|||| |+.+. ......++ ..++++ |++++. +++.++..+.. -...|.+++-.. ...|+|
T Consensus 3 ~irvgiiG~G-~~~~~~~~~~~~~~~~~~~~vav~d~~~~~---a~~~a~~~~~~---~~~~~~~~ll~~----~~iD~V 71 (342)
T COG0673 3 MIRVGIIGAG-GIAGKAHLPALAALGGGLELVAVVDRDPER---AEAFAEEFGIA---KAYTDLEELLAD----PDIDAV 71 (342)
T ss_pred eeEEEEEccc-HHHHHHhHHHHHhCCCceEEEEEecCCHHH---HHHHHHHcCCC---cccCCHHHHhcC----CCCCEE
Confidence 3578889999 22222 12223344 366665 998876 56666677754 334567766432 458998
Q ss_pred EEcCc-ccHHHHHHHHccccccCeEEEEEEcC-CcHHHHHHHHHHHHHhCCeEe
Q 022962 197 VARAV-AEMRILAEYCLPLVRVGGLFVAAKGH-DPQEEVKNSERAVQLMGASLL 248 (289)
Q Consensus 197 ~sn~~-~~~~~ll~~~~~~LkpgG~l~~~~g~-~~~~ei~~~~~~l~~~g~~~~ 248 (289)
+.... .....+. ...|+-|=.++++++- ...+|.+++.++.++.|..+.
T Consensus 72 ~Iatp~~~H~e~~---~~AL~aGkhVl~EKPla~t~~ea~~l~~~a~~~~~~l~ 122 (342)
T COG0673 72 YIATPNALHAELA---LAALEAGKHVLCEKPLALTLEEAEELVELARKAGVKLM 122 (342)
T ss_pred EEcCCChhhHHHH---HHHHhcCCEEEEcCCCCCCHHHHHHHHHHHHHcCCcee
Confidence 86532 2222333 3456667788888863 456677777777777765544
No 391
>TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Lac family includes several sequenced lactose (b-galactoside) permeases of Gram-positive bacteria as well as those in E. coli. While the Lac family usually consists of two polypeptide components IIA and IICB, the Chb permease of E. coli consists of three IIA, IIB and IIC. This family is specific for the IIB subunit of the Lac PTS family.
Probab=82.83 E-value=4.2 Score=30.53 Aligned_cols=55 Identities=18% Similarity=0.260 Sum_probs=37.0
Q ss_pred CeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCcCCCCceEEEEcC
Q 022962 123 LKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARA 200 (289)
Q Consensus 123 ~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~~~~~fD~V~sn~ 200 (289)
.+|| +.||+|.-+-.++.. .++.+++.|+ ++++.+.++.++... ...||+|+..+
T Consensus 4 ~~IL-l~C~~G~sSS~l~~k------------------~~~~~~~~gi-~~~v~a~~~~~~~~~---~~~~Dvill~p 58 (95)
T TIGR00853 4 TNIL-LLCAAGMSTSLLVNK------------------MNKAAEEYGV-PVKIAAGSYGAAGEK---LDDADVVLLAP 58 (95)
T ss_pred cEEE-EECCCchhHHHHHHH------------------HHHHHHHCCC-cEEEEEecHHHHHhh---cCCCCEEEECc
Confidence 4666 789999765544432 4666777787 488888887766432 24689998874
No 392
>PRK05866 short chain dehydrogenase; Provisional
Probab=82.68 E-value=4 Score=36.85 Aligned_cols=77 Identities=12% Similarity=0.035 Sum_probs=51.5
Q ss_pred CCeEEEEcCCCChHHHHHHHHC--CCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCc-------CCCC
Q 022962 122 NLKLVDVGTGAGLPGLVLAIAC--PDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVS-------FREQ 192 (289)
Q Consensus 122 ~~~VLDiGcG~G~~~l~la~~~--p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~-------~~~~ 192 (289)
+.+||=.|+++| +|..+++.+ .+.+|++++.+++.++.+.+.....+. ++.++..|+.+...-.. .-+.
T Consensus 40 ~k~vlItGasgg-IG~~la~~La~~G~~Vi~~~R~~~~l~~~~~~l~~~~~-~~~~~~~Dl~d~~~v~~~~~~~~~~~g~ 117 (293)
T PRK05866 40 GKRILLTGASSG-IGEAAAEQFARRGATVVAVARREDLLDAVADRITRAGG-DAMAVPCDLSDLDAVDALVADVEKRIGG 117 (293)
T ss_pred CCEEEEeCCCcH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCC-cEEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence 578998897655 577777643 468999999998877666555544443 47788888876421000 0136
Q ss_pred ceEEEEcC
Q 022962 193 YDVAVARA 200 (289)
Q Consensus 193 fD~V~sn~ 200 (289)
.|+++.++
T Consensus 118 id~li~~A 125 (293)
T PRK05866 118 VDILINNA 125 (293)
T ss_pred CCEEEECC
Confidence 89999884
No 393
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=82.66 E-value=18 Score=32.54 Aligned_cols=92 Identities=15% Similarity=0.147 Sum_probs=55.3
Q ss_pred CeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHc-------CC----------CCEEEEeccccccCC
Q 022962 123 LKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLT-------QL----------LNVQIVRGRAETLGK 185 (289)
Q Consensus 123 ~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~-------~l----------~ni~~~~~d~~~~~~ 185 (289)
.+|.=||+|+=..++.......+.+|+.+|.+++.++.+.+...++ +. .++++. .+.+.+
T Consensus 5 ~kI~vIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~-~~~~~~-- 81 (292)
T PRK07530 5 KKVGVIGAGQMGNGIAHVCALAGYDVLLNDVSADRLEAGLATINGNLARQVAKGKISEEARAAALARISTA-TDLEDL-- 81 (292)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEee-CCHHHh--
Confidence 3577777764433333322334679999999999888765433221 21 234432 333322
Q ss_pred CCcCCCCceEEEEcCcc---cHHHHHHHHccccccCeEEE
Q 022962 186 DVSFREQYDVAVARAVA---EMRILAEYCLPLVRVGGLFV 222 (289)
Q Consensus 186 ~~~~~~~fD~V~sn~~~---~~~~ll~~~~~~LkpgG~l~ 222 (289)
...|+|+..-.. -...+++.+...++++..++
T Consensus 82 -----~~aD~Vieavpe~~~~k~~~~~~l~~~~~~~~ii~ 116 (292)
T PRK07530 82 -----ADCDLVIEAATEDETVKRKIFAQLCPVLKPEAILA 116 (292)
T ss_pred -----cCCCEEEEcCcCCHHHHHHHHHHHHhhCCCCcEEE
Confidence 357998876433 24577788888898887765
No 394
>PRK15057 UDP-glucose 6-dehydrogenase; Provisional
Probab=82.64 E-value=9.3 Score=36.29 Aligned_cols=33 Identities=24% Similarity=0.433 Sum_probs=24.3
Q ss_pred CCChHHHHHHHHC-CCCEEEEEeCChHHHHHHHH
Q 022962 131 GAGLPGLVLAIAC-PDWKVTLLESMNKRCVFLEH 163 (289)
Q Consensus 131 G~G~~~l~la~~~-p~~~V~~iD~s~~~l~~a~~ 163 (289)
|.|..|+.+|..+ .+.+|+++|++++.++.+++
T Consensus 7 GlGyvGl~~A~~lA~G~~VigvD~d~~kv~~l~~ 40 (388)
T PRK15057 7 GTGYVGLSNGLLIAQNHEVVALDILPSRVAMLND 40 (388)
T ss_pred CCCHHHHHHHHHHHhCCcEEEEECCHHHHHHHHc
Confidence 5566666666432 25789999999999887765
No 395
>PF04378 RsmJ: Ribosomal RNA small subunit methyltransferase D, RsmJ; InterPro: IPR007473 This is a bacterial protein of unknown function, possibly secreted.; PDB: 2OO3_A.
Probab=82.50 E-value=10 Score=33.73 Aligned_cols=113 Identities=12% Similarity=0.112 Sum_probs=70.6
Q ss_pred CChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCC-CCcCCCCceEEEEcC----cccHHH
Q 022962 132 AGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGK-DVSFREQYDVAVARA----VAEMRI 206 (289)
Q Consensus 132 ~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~-~~~~~~~fD~V~sn~----~~~~~~ 206 (289)
.|.+.+......+.-+.+++|+.+.-.+.++++.... .++++++.|..+.-. .....+.=-+|+... ..++..
T Consensus 66 PGSP~ia~~llR~qDrl~l~ELHp~d~~~L~~~~~~~--~~v~v~~~DG~~~l~allPP~~rRglVLIDPpYE~~~dy~~ 143 (245)
T PF04378_consen 66 PGSPAIAARLLREQDRLVLFELHPQDFEALKKNFRRD--RRVRVHHRDGYEGLKALLPPPERRGLVLIDPPYEQKDDYQR 143 (245)
T ss_dssp E-HHHHHHHHS-TTSEEEEE--SHHHHHHHTTS--TT--S-EEEE-S-HHHHHHHH-S-TTS-EEEEE-----STTHHHH
T ss_pred CCCHHHHHHhCCccceEEEEecCchHHHHHHHHhccC--CccEEEeCchhhhhhhhCCCCCCCeEEEECCCCCCchHHHH
Confidence 4555555554556789999999999998888776542 379999999876210 000124567888874 346777
Q ss_pred HHHHHccccc--cCeEEEEEEcCCcHHHHHHHHHHHHHhCCe
Q 022962 207 LAEYCLPLVR--VGGLFVAAKGHDPQEEVKNSERAVQLMGAS 246 (289)
Q Consensus 207 ll~~~~~~Lk--pgG~l~~~~g~~~~~ei~~~~~~l~~~g~~ 246 (289)
+++.+...+| +.|.+++..+-....+...+.+.++..|..
T Consensus 144 v~~~l~~a~kR~~~G~~~iWYPi~~~~~~~~~~~~l~~~~~~ 185 (245)
T PF04378_consen 144 VVDALAKALKRWPTGVYAIWYPIKDRERVDRFLRALKALGIK 185 (245)
T ss_dssp HHHHHHHHHHH-TTSEEEEEEEESSHHHHHHHHHHHHHH-SS
T ss_pred HHHHHHHHHHhcCCcEEEEEeecccHHHHHHHHHHHHhcCCC
Confidence 7777777777 789988888877777788888888887754
No 396
>PRK06139 short chain dehydrogenase; Provisional
Probab=82.50 E-value=4.2 Score=37.58 Aligned_cols=77 Identities=18% Similarity=0.127 Sum_probs=53.2
Q ss_pred CCeEEEEcCCCChHHHHHHHHC--CCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCC-------cCCCC
Q 022962 122 NLKLVDVGTGAGLPGLVLAIAC--PDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDV-------SFREQ 192 (289)
Q Consensus 122 ~~~VLDiGcG~G~~~l~la~~~--p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~-------~~~~~ 192 (289)
+.+||=.|+++| +|..+++.+ .+.+|+.++.+++.++...+.++..+. ++.++..|+.+...-. ...+.
T Consensus 7 ~k~vlITGAs~G-IG~aia~~la~~G~~Vvl~~R~~~~l~~~~~~~~~~g~-~~~~~~~Dv~d~~~v~~~~~~~~~~~g~ 84 (330)
T PRK06139 7 GAVVVITGASSG-IGQATAEAFARRGARLVLAARDEEALQAVAEECRALGA-EVLVVPTDVTDADQVKALATQAASFGGR 84 (330)
T ss_pred CCEEEEcCCCCH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCC-cEEEEEeeCCCHHHHHHHHHHHHHhcCC
Confidence 568888888655 577777643 468999999999888777776666554 5777788886532100 01146
Q ss_pred ceEEEEcC
Q 022962 193 YDVAVARA 200 (289)
Q Consensus 193 fD~V~sn~ 200 (289)
+|+++.|+
T Consensus 85 iD~lVnnA 92 (330)
T PRK06139 85 IDVWVNNV 92 (330)
T ss_pred CCEEEECC
Confidence 89999884
No 397
>cd08286 FDH_like_ADH2 formaldehyde dehydrogenase (FDH)-like. This group is related to formaldehyde dehydrogenase (FDH), which is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. This family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Another member is identified as a dihydroxyacetone reductase. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (
Probab=82.47 E-value=6.3 Score=36.02 Aligned_cols=96 Identities=20% Similarity=0.197 Sum_probs=54.8
Q ss_pred CCCCeEEEEcCCCChHHHH---HHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCC-EEEEecccc-ccCCCCcCCCCce
Q 022962 120 NSNLKLVDVGTGAGLPGLV---LAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLN-VQIVRGRAE-TLGKDVSFREQYD 194 (289)
Q Consensus 120 ~~~~~VLDiGcG~G~~~l~---la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~n-i~~~~~d~~-~~~~~~~~~~~fD 194 (289)
.++.+||=.|+ |.++.. +|+..+..+|+++|.++...+.+++ +|.+. +.....+.. .+... .....+|
T Consensus 165 ~~g~~vlI~g~--g~~g~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~----~g~~~~v~~~~~~~~~~i~~~-~~~~~~d 237 (345)
T cd08286 165 KPGDTVAIVGA--GPVGLAALLTAQLYSPSKIIMVDLDDNRLEVAKK----LGATHTVNSAKGDAIEQVLEL-TDGRGVD 237 (345)
T ss_pred CCCCEEEEECC--CHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH----hCCCceeccccccHHHHHHHH-hCCCCCC
Confidence 34677776665 555544 5555544789999999877666553 45432 221111111 01000 0124699
Q ss_pred EEEEcCcccHHHHHHHHccccccCeEEEEE
Q 022962 195 VAVARAVAEMRILAEYCLPLVRVGGLFVAA 224 (289)
Q Consensus 195 ~V~sn~~~~~~~ll~~~~~~LkpgG~l~~~ 224 (289)
+|+... .. ...++.+.+.|+++|+++..
T Consensus 238 ~vld~~-g~-~~~~~~~~~~l~~~g~~v~~ 265 (345)
T cd08286 238 VVIEAV-GI-PATFELCQELVAPGGHIANV 265 (345)
T ss_pred EEEECC-CC-HHHHHHHHHhccCCcEEEEe
Confidence 998543 22 33567777899999998754
No 398
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=82.46 E-value=7.3 Score=37.39 Aligned_cols=84 Identities=12% Similarity=0.045 Sum_probs=52.9
Q ss_pred CCCeEEEEcCCCChHHHHH---HHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCcCCCCceEEE
Q 022962 121 SNLKLVDVGTGAGLPGLVL---AIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAV 197 (289)
Q Consensus 121 ~~~~VLDiGcG~G~~~l~l---a~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~~~~~fD~V~ 197 (289)
.+.+|+=+|+|. +|+.. ++.. +++|+.+|.++..++.|+. .|.. .+ +.++.. ..+|+|+
T Consensus 201 ~GktVvViG~G~--IG~~va~~ak~~-Ga~ViV~d~d~~R~~~A~~----~G~~---~~--~~~e~v------~~aDVVI 262 (413)
T cd00401 201 AGKVAVVAGYGD--VGKGCAQSLRGQ-GARVIVTEVDPICALQAAM----EGYE---VM--TMEEAV------KEGDIFV 262 (413)
T ss_pred CCCEEEEECCCH--HHHHHHHHHHHC-CCEEEEEECChhhHHHHHh----cCCE---Ec--cHHHHH------cCCCEEE
Confidence 488999999985 34443 3333 5699999999987666654 4542 21 122211 3479998
Q ss_pred EcCcccHHHHHH-HHccccccCeEEEEE
Q 022962 198 ARAVAEMRILAE-YCLPLVRVGGLFVAA 224 (289)
Q Consensus 198 sn~~~~~~~ll~-~~~~~LkpgG~l~~~ 224 (289)
... .. ..++. ...+.+|+||.++..
T Consensus 263 ~at-G~-~~~i~~~~l~~mk~Ggilvnv 288 (413)
T cd00401 263 TTT-GN-KDIITGEHFEQMKDGAIVCNI 288 (413)
T ss_pred ECC-CC-HHHHHHHHHhcCCCCcEEEEe
Confidence 643 22 23444 447899999998754
No 399
>PRK06949 short chain dehydrogenase; Provisional
Probab=82.25 E-value=8.3 Score=33.42 Aligned_cols=77 Identities=14% Similarity=0.023 Sum_probs=51.5
Q ss_pred CCeEEEEcCCCChHHHHHHHHC--CCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCC-------cCCCC
Q 022962 122 NLKLVDVGTGAGLPGLVLAIAC--PDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDV-------SFREQ 192 (289)
Q Consensus 122 ~~~VLDiGcG~G~~~l~la~~~--p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~-------~~~~~ 192 (289)
+.+||=.| |+|.+|..+++.+ .+.+|++++.+++.++.+....+..+. ++.++..|+.+...-. ...+.
T Consensus 9 ~k~ilItG-asg~IG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~l~~~~~-~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 86 (258)
T PRK06949 9 GKVALVTG-ASSGLGARFAQVLAQAGAKVVLASRRVERLKELRAEIEAEGG-AAHVVSLDVTDYQSIKAAVAHAETEAGT 86 (258)
T ss_pred CCEEEEEC-CCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCC-cEEEEEecCCCHHHHHHHHHHHHHhcCC
Confidence 67899999 5566788887654 467999999998877666555444332 5778888876532100 00135
Q ss_pred ceEEEEcC
Q 022962 193 YDVAVARA 200 (289)
Q Consensus 193 fD~V~sn~ 200 (289)
.|.|+.++
T Consensus 87 ~d~li~~a 94 (258)
T PRK06949 87 IDILVNNS 94 (258)
T ss_pred CCEEEECC
Confidence 79999874
No 400
>cd08300 alcohol_DH_class_III class III alcohol dehydrogenases. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dim
Probab=82.10 E-value=11 Score=34.94 Aligned_cols=95 Identities=13% Similarity=0.048 Sum_probs=55.1
Q ss_pred CCCCCeEEEEcCCCChHHHH---HHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEecc----ccc-cCCCCcCC
Q 022962 119 CNSNLKLVDVGTGAGLPGLV---LAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGR----AET-LGKDVSFR 190 (289)
Q Consensus 119 ~~~~~~VLDiGcG~G~~~l~---la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d----~~~-~~~~~~~~ 190 (289)
++++.+||=.|+ |.+|+. +|+.....+|+++|.+++.++.+++ +|.+.+ +-..+ +.+ +.. ...
T Consensus 184 ~~~g~~VlV~G~--G~vG~~a~~~ak~~G~~~vi~~~~~~~~~~~~~~----lGa~~~-i~~~~~~~~~~~~v~~--~~~ 254 (368)
T cd08300 184 VEPGSTVAVFGL--GAVGLAVIQGAKAAGASRIIGIDINPDKFELAKK----FGATDC-VNPKDHDKPIQQVLVE--MTD 254 (368)
T ss_pred CCCCCEEEEECC--CHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHH----cCCCEE-EcccccchHHHHHHHH--HhC
Confidence 345888998886 445544 4555543379999999988776643 565322 11111 111 100 011
Q ss_pred CCceEEEEcCcccHHHHHHHHccccccC-eEEEEE
Q 022962 191 EQYDVAVARAVAEMRILAEYCLPLVRVG-GLFVAA 224 (289)
Q Consensus 191 ~~fD~V~sn~~~~~~~ll~~~~~~Lkpg-G~l~~~ 224 (289)
+.+|+|+-..-. ...+..+.+.|+++ |+++..
T Consensus 255 ~g~d~vid~~g~--~~~~~~a~~~l~~~~G~~v~~ 287 (368)
T cd08300 255 GGVDYTFECIGN--VKVMRAALEACHKGWGTSVII 287 (368)
T ss_pred CCCcEEEECCCC--hHHHHHHHHhhccCCCeEEEE
Confidence 368998854221 23556667788887 998864
No 401
>PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=82.06 E-value=12 Score=33.94 Aligned_cols=107 Identities=14% Similarity=0.086 Sum_probs=61.2
Q ss_pred CCChHHHHHHHH--CCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCcCCCCceEEEEc-Ccc-cHHH
Q 022962 131 GAGLPGLVLAIA--CPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVAR-AVA-EMRI 206 (289)
Q Consensus 131 G~G~~~l~la~~--~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~~~~~fD~V~sn-~~~-~~~~ 206 (289)
|.|..|..+|.. ..+.+|+..|.+++.++.++ ..| +.. ..+.+++... ....|+|+.. ... ..+.
T Consensus 7 GlG~mG~~mA~~L~~~g~~v~v~dr~~~~~~~~~----~~g---~~~-~~s~~~~~~~---~~~advVi~~vp~~~~~~~ 75 (299)
T PRK12490 7 GLGKMGGNMAERLREDGHEVVGYDVNQEAVDVAG----KLG---ITA-RHSLEELVSK---LEAPRTIWVMVPAGEVTES 75 (299)
T ss_pred cccHHHHHHHHHHHhCCCEEEEEECCHHHHHHHH----HCC---Cee-cCCHHHHHHh---CCCCCEEEEEecCchHHHH
Confidence 455677666654 24578999999987765543 233 222 2334333211 0125777754 332 5677
Q ss_pred HHHHHccccccCeEEEEEEcCCcHHHHHHHHHHHHHhCCeEeE
Q 022962 207 LAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLLQ 249 (289)
Q Consensus 207 ll~~~~~~LkpgG~l~~~~g~~~~~ei~~~~~~l~~~g~~~~~ 249 (289)
+++.+...+++|-.++ ..+........++.+.+...|...++
T Consensus 76 v~~~i~~~l~~g~ivi-d~st~~~~~~~~~~~~~~~~g~~~vd 117 (299)
T PRK12490 76 VIKDLYPLLSPGDIVV-DGGNSRYKDDLRRAEELAERGIHYVD 117 (299)
T ss_pred HHHHHhccCCCCCEEE-ECCCCCchhHHHHHHHHHHcCCeEEe
Confidence 7788777887776554 34333344455556667777865544
No 402
>KOG2013 consensus SMT3/SUMO-activating complex, catalytic component UBA2 [Posttranslational modification, protein turnover, chaperones]
Probab=82.06 E-value=1.3 Score=42.80 Aligned_cols=76 Identities=17% Similarity=0.233 Sum_probs=46.8
Q ss_pred CCeEEEEcCCC-ChHHHH-HHHHCCCCEEEEEeCCh-------------------HHHHHHHHHHHHcCC-CCEEEEecc
Q 022962 122 NLKLVDVGTGA-GLPGLV-LAIACPDWKVTLLESMN-------------------KRCVFLEHAVSLTQL-LNVQIVRGR 179 (289)
Q Consensus 122 ~~~VLDiGcG~-G~~~l~-la~~~p~~~V~~iD~s~-------------------~~l~~a~~~~~~~~l-~ni~~~~~d 179 (289)
+.+||=||||. |+-.+- ||. -.-.+|+.||.+. .....|......+.- -++..+|++
T Consensus 12 ~~riLvVGaGGIGCELLKnLal-~gf~~IhiIDlDTIDlSNLNRQFLFrkkhVgqsKA~vA~~~v~~Fnpn~~l~~yhan 90 (603)
T KOG2013|consen 12 SGRILVVGAGGIGCELLKNLAL-TGFEEIHIIDLDTIDLSNLNRQFLFRKKHVGQSKATVAAKAVKQFNPNIKLVPYHAN 90 (603)
T ss_pred cCeEEEEecCcccHHHHHHHHH-hcCCeeEEEeccceeccchhhhheeehhhcCchHHHHHHHHHHHhCCCCceEecccc
Confidence 78999999973 443222 222 2335777777542 344455555555543 368889999
Q ss_pred ccccCCCCcCCCCceEEEE
Q 022962 180 AETLGKDVSFREQYDVAVA 198 (289)
Q Consensus 180 ~~~~~~~~~~~~~fD~V~s 198 (289)
+.+......|-++||+|+.
T Consensus 91 I~e~~fnv~ff~qfdiV~N 109 (603)
T KOG2013|consen 91 IKEPKFNVEFFRQFDIVLN 109 (603)
T ss_pred ccCcchHHHHHHHHHHHHH
Confidence 9886444344467998764
No 403
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=82.02 E-value=7.1 Score=38.82 Aligned_cols=92 Identities=14% Similarity=0.034 Sum_probs=54.6
Q ss_pred CeEEEEcCCCChHHHHHHHHC--CCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCC-cCCCCceEEEEc
Q 022962 123 LKLVDVGTGAGLPGLVLAIAC--PDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDV-SFREQYDVAVAR 199 (289)
Q Consensus 123 ~~VLDiGcG~G~~~l~la~~~--p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~-~~~~~fD~V~sn 199 (289)
.+|+=+ |.|..|..+++.. .+.+|+.||.|++.++.+++ . +..++++|..+...-. ..-+++|.+++.
T Consensus 418 ~hiiI~--G~G~~G~~la~~L~~~g~~vvvId~d~~~~~~~~~----~---g~~~i~GD~~~~~~L~~a~i~~a~~viv~ 488 (558)
T PRK10669 418 NHALLV--GYGRVGSLLGEKLLAAGIPLVVIETSRTRVDELRE----R---GIRAVLGNAANEEIMQLAHLDCARWLLLT 488 (558)
T ss_pred CCEEEE--CCChHHHHHHHHHHHCCCCEEEEECCHHHHHHHHH----C---CCeEEEcCCCCHHHHHhcCccccCEEEEE
Confidence 355554 5557778888754 35789999999988776654 2 4678899988742110 011478877654
Q ss_pred CcccH-H-HHHHHHccccccCeEEEEE
Q 022962 200 AVAEM-R-ILAEYCLPLVRVGGLFVAA 224 (289)
Q Consensus 200 ~~~~~-~-~ll~~~~~~LkpgG~l~~~ 224 (289)
...+. . .+... .+...|+..++.-
T Consensus 489 ~~~~~~~~~iv~~-~~~~~~~~~iiar 514 (558)
T PRK10669 489 IPNGYEAGEIVAS-AREKRPDIEIIAR 514 (558)
T ss_pred cCChHHHHHHHHH-HHHHCCCCeEEEE
Confidence 22221 1 23333 3445677776653
No 404
>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in
Probab=81.84 E-value=12 Score=34.19 Aligned_cols=96 Identities=11% Similarity=0.045 Sum_probs=57.8
Q ss_pred CCCCeEEEEcC--CCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEE-Eec-cccc-cCCCCcCCCCce
Q 022962 120 NSNLKLVDVGT--GAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQI-VRG-RAET-LGKDVSFREQYD 194 (289)
Q Consensus 120 ~~~~~VLDiGc--G~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~-~~~-d~~~-~~~~~~~~~~fD 194 (289)
.++.+||=.|+ |.|..++.+|+.. +.+|++++.+++..+.+++. +|.+.+-- -.. +..+ +.. ...+.+|
T Consensus 150 ~~g~~VlI~Ga~G~vG~~aiqlAk~~-G~~Vi~~~~~~~~~~~~~~~---lGa~~vi~~~~~~~~~~~i~~--~~~~gvd 223 (338)
T cd08295 150 KKGETVFVSAASGAVGQLVGQLAKLK-GCYVVGSAGSDEKVDLLKNK---LGFDDAFNYKEEPDLDAALKR--YFPNGID 223 (338)
T ss_pred CCCCEEEEecCccHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHh---cCCceeEEcCCcccHHHHHHH--hCCCCcE
Confidence 35889998886 3444555567665 56899999988876666541 45543211 111 2111 111 0124689
Q ss_pred EEEEcCcccHHHHHHHHccccccCeEEEEE
Q 022962 195 VAVARAVAEMRILAEYCLPLVRVGGLFVAA 224 (289)
Q Consensus 195 ~V~sn~~~~~~~ll~~~~~~LkpgG~l~~~ 224 (289)
+|+-.. .. ..+..+.+.|+++|+++..
T Consensus 224 ~v~d~~-g~--~~~~~~~~~l~~~G~iv~~ 250 (338)
T cd08295 224 IYFDNV-GG--KMLDAVLLNMNLHGRIAAC 250 (338)
T ss_pred EEEECC-CH--HHHHHHHHHhccCcEEEEe
Confidence 998543 22 4566778899999998864
No 405
>PRK06124 gluconate 5-dehydrogenase; Provisional
Probab=81.83 E-value=8.9 Score=33.29 Aligned_cols=77 Identities=10% Similarity=-0.057 Sum_probs=51.3
Q ss_pred CCeEEEEcCCCChHHHHHHHHC--CCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCC-------cCCCC
Q 022962 122 NLKLVDVGTGAGLPGLVLAIAC--PDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDV-------SFREQ 192 (289)
Q Consensus 122 ~~~VLDiGcG~G~~~l~la~~~--p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~-------~~~~~ 192 (289)
+.++|=.|++ |.+|..+++.+ .+.+|++++.+++.++.+.+..+..+. ++.++..|+.+...-. ..-++
T Consensus 11 ~k~ilItGas-~~IG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~Dl~~~~~~~~~~~~~~~~~~~ 88 (256)
T PRK06124 11 GQVALVTGSA-RGLGFEIARALAGAGAHVLVNGRNAATLEAAVAALRAAGG-AAEALAFDIADEEAVAAAFARIDAEHGR 88 (256)
T ss_pred CCEEEEECCC-chHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHhcCC-ceEEEEccCCCHHHHHHHHHHHHHhcCC
Confidence 7789989965 55677777653 468999999998776655555555443 5788888887632100 00136
Q ss_pred ceEEEEcC
Q 022962 193 YDVAVARA 200 (289)
Q Consensus 193 fD~V~sn~ 200 (289)
.|.++.++
T Consensus 89 id~vi~~a 96 (256)
T PRK06124 89 LDILVNNV 96 (256)
T ss_pred CCEEEECC
Confidence 79999873
No 406
>COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]
Probab=81.50 E-value=9.1 Score=34.83 Aligned_cols=106 Identities=17% Similarity=0.229 Sum_probs=66.2
Q ss_pred CCChHHHHHHHHC--CCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCcCCCCceEEEEcC--cccHHH
Q 022962 131 GAGLPGLVLAIAC--PDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARA--VAEMRI 206 (289)
Q Consensus 131 G~G~~~l~la~~~--p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~~~~~fD~V~sn~--~~~~~~ 206 (289)
|.|..|..+|... .+..|+..|.++++. .+.+...|.. ......+.. ...|+|++.- -+..+.
T Consensus 7 GLG~MG~pmA~~L~~aG~~v~v~~r~~~ka---~~~~~~~Ga~---~a~s~~eaa-------~~aDvVitmv~~~~~V~~ 73 (286)
T COG2084 7 GLGIMGSPMAANLLKAGHEVTVYNRTPEKA---AELLAAAGAT---VAASPAEAA-------AEADVVITMLPDDAAVRA 73 (286)
T ss_pred cCchhhHHHHHHHHHCCCEEEEEeCChhhh---hHHHHHcCCc---ccCCHHHHH-------HhCCEEEEecCCHHHHHH
Confidence 5567778887653 468999999998762 2233334432 222222211 4579999863 334555
Q ss_pred HH---HHHccccccCeEEEEEEcCCcHHHHHHHHHHHHHhCCeEeEE
Q 022962 207 LA---EYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLLQL 250 (289)
Q Consensus 207 ll---~~~~~~LkpgG~l~~~~g~~~~~ei~~~~~~l~~~g~~~~~~ 250 (289)
++ ..+...++||..++-+ .....+..+++.+.++..|+..++-
T Consensus 74 V~~g~~g~~~~~~~G~i~IDm-STisp~~a~~~a~~~~~~G~~~lDA 119 (286)
T COG2084 74 VLFGENGLLEGLKPGAIVIDM-STISPETARELAAALAAKGLEFLDA 119 (286)
T ss_pred HHhCccchhhcCCCCCEEEEC-CCCCHHHHHHHHHHHHhcCCcEEec
Confidence 55 3466677888887654 3445566677778888999877655
No 407
>PRK08213 gluconate 5-dehydrogenase; Provisional
Probab=81.14 E-value=9.4 Score=33.25 Aligned_cols=77 Identities=14% Similarity=0.048 Sum_probs=52.7
Q ss_pred CCeEEEEcCCCChHHHHHHHHC--CCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCC-------cCCCC
Q 022962 122 NLKLVDVGTGAGLPGLVLAIAC--PDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDV-------SFREQ 192 (289)
Q Consensus 122 ~~~VLDiGcG~G~~~l~la~~~--p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~-------~~~~~ 192 (289)
+.++|=.| |+|.+|..+++.+ .+.+|+.++.+...++.+....+..+. ++.++.+|+.+...-. ...+.
T Consensus 12 ~k~ilItG-a~g~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~i~~~~~-~~~~~~~Dl~d~~~i~~~~~~~~~~~~~ 89 (259)
T PRK08213 12 GKTALVTG-GSRGLGLQIAEALGEAGARVVLSARKAEELEEAAAHLEALGI-DALWIAADVADEADIERLAEETLERFGH 89 (259)
T ss_pred CCEEEEEC-CCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCC-eEEEEEccCCCHHHHHHHHHHHHHHhCC
Confidence 67899899 5677788888653 467999999998777666655554432 5778888887642110 00136
Q ss_pred ceEEEEcC
Q 022962 193 YDVAVARA 200 (289)
Q Consensus 193 fD~V~sn~ 200 (289)
.|.|+.++
T Consensus 90 id~vi~~a 97 (259)
T PRK08213 90 VDILVNNA 97 (259)
T ss_pred CCEEEECC
Confidence 89999874
No 408
>PRK07985 oxidoreductase; Provisional
Probab=80.98 E-value=17 Score=32.63 Aligned_cols=102 Identities=15% Similarity=0.111 Sum_probs=60.4
Q ss_pred CCeEEEEcCCCChHHHHHHHHC--CCCEEEEEeCCh--HHHHHHHHHHHHcCCCCEEEEeccccccCCC-------CcCC
Q 022962 122 NLKLVDVGTGAGLPGLVLAIAC--PDWKVTLLESMN--KRCVFLEHAVSLTQLLNVQIVRGRAETLGKD-------VSFR 190 (289)
Q Consensus 122 ~~~VLDiGcG~G~~~l~la~~~--p~~~V~~iD~s~--~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~-------~~~~ 190 (289)
+.++|-.|++.| +|..+|+.+ .+.+|+.++.+. +..+.+.+..+..+. ++.++..|+.+...- ...-
T Consensus 49 ~k~vlITGas~g-IG~aia~~L~~~G~~Vi~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~Dl~~~~~~~~~~~~~~~~~ 126 (294)
T PRK07985 49 DRKALVTGGDSG-IGRAAAIAYAREGADVAISYLPVEEEDAQDVKKIIEECGR-KAVLLPGDLSDEKFARSLVHEAHKAL 126 (294)
T ss_pred CCEEEEECCCCc-HHHHHHHHHHHCCCEEEEecCCcchhhHHHHHHHHHHcCC-eEEEEEccCCCHHHHHHHHHHHHHHh
Confidence 578999997554 677777653 467898887543 334444444444443 577788888763210 0001
Q ss_pred CCceEEEEcCc-------------cc-----------HHHHHHHHccccccCeEEEEEE
Q 022962 191 EQYDVAVARAV-------------AE-----------MRILAEYCLPLVRVGGLFVAAK 225 (289)
Q Consensus 191 ~~fD~V~sn~~-------------~~-----------~~~ll~~~~~~LkpgG~l~~~~ 225 (289)
+..|.++.|+- .+ .-.+++.+.+.++.+|.+++..
T Consensus 127 g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~g~iv~iS 185 (294)
T PRK07985 127 GGLDIMALVAGKQVAIPDIADLTSEQFQKTFAINVFALFWLTQEAIPLLPKGASIITTS 185 (294)
T ss_pred CCCCEEEECCCCCcCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHhhhcCCEEEEEC
Confidence 35799887731 01 1245556666677788887653
No 409
>COG4301 Uncharacterized conserved protein [Function unknown]
Probab=80.87 E-value=28 Score=31.20 Aligned_cols=102 Identities=17% Similarity=0.148 Sum_probs=65.1
Q ss_pred CCCeEEEEcCCCChHHHHHHHHCCC----CEEEEEeCChHHHHHHHHHHHH--cCCCCEEEEeccccccCCCCcCCCCce
Q 022962 121 SNLKLVDVGTGAGLPGLVLAIACPD----WKVTLLESMNKRCVFLEHAVSL--TQLLNVQIVRGRAETLGKDVSFREQYD 194 (289)
Q Consensus 121 ~~~~VLDiGcG~G~~~l~la~~~p~----~~V~~iD~s~~~l~~a~~~~~~--~~l~ni~~~~~d~~~~~~~~~~~~~fD 194 (289)
.+...+|+|+|+-.=+..|...+.. ...+.||+|+..+...-+.+.. .++ .|.-+++|.+..-.... ...--
T Consensus 78 g~~~lveLGsGns~Ktr~Llda~~~~~~~~ryvpiDv~a~iL~~ta~ai~~~y~~l-~v~~l~~~~~~~La~~~-~~~~R 155 (321)
T COG4301 78 GACTLVELGSGNSTKTRILLDALAHRGSLLRYVPIDVSASILRATATAILREYPGL-EVNALCGDYELALAELP-RGGRR 155 (321)
T ss_pred CcceEEEecCCccHHHHHHHHHhhhcCCcceeeeecccHHHHHHHHHHHHHhCCCC-eEeehhhhHHHHHhccc-CCCeE
Confidence 3678999999999877766555432 6899999999876654443322 233 36667777765221111 12222
Q ss_pred EEEEc-------CcccHHHHHHHHccccccCeEEEEE
Q 022962 195 VAVAR-------AVAEMRILAEYCLPLVRVGGLFVAA 224 (289)
Q Consensus 195 ~V~sn-------~~~~~~~ll~~~~~~LkpgG~l~~~ 224 (289)
+++.- ...+-..++.++...|+||-.|++-
T Consensus 156 l~~flGStlGN~tp~e~~~Fl~~l~~a~~pGd~~LlG 192 (321)
T COG4301 156 LFVFLGSTLGNLTPGECAVFLTQLRGALRPGDYFLLG 192 (321)
T ss_pred EEEEecccccCCChHHHHHHHHHHHhcCCCcceEEEe
Confidence 22221 1235578999999999999998863
No 410
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=80.87 E-value=23 Score=32.13 Aligned_cols=86 Identities=15% Similarity=0.064 Sum_probs=52.4
Q ss_pred CeEEEEcCCCChHHHHHHH----HCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEe-ccccccCCCCcCCCCceEEE
Q 022962 123 LKLVDVGTGAGLPGLVLAI----ACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVR-GRAETLGKDVSFREQYDVAV 197 (289)
Q Consensus 123 ~~VLDiGcG~G~~~l~la~----~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~-~d~~~~~~~~~~~~~fD~V~ 197 (289)
.+|+=+|.| .+|-.+|+ ......|++.|.+...++.+.+ +|+. ... .+..... ....|+|+
T Consensus 4 ~~v~IvG~G--liG~s~a~~l~~~g~~v~i~g~d~~~~~~~~a~~----lgv~---d~~~~~~~~~~-----~~~aD~Vi 69 (279)
T COG0287 4 MKVGIVGLG--LMGGSLARALKEAGLVVRIIGRDRSAATLKAALE----LGVI---DELTVAGLAEA-----AAEADLVI 69 (279)
T ss_pred cEEEEECCc--hHHHHHHHHHHHcCCeEEEEeecCcHHHHHHHhh----cCcc---cccccchhhhh-----cccCCEEE
Confidence 466677754 44544443 3344567899988766554433 3431 111 1110111 14579988
Q ss_pred -EcCcccHHHHHHHHccccccCeEEE
Q 022962 198 -ARAVAEMRILAEYCLPLVRVGGLFV 222 (289)
Q Consensus 198 -sn~~~~~~~ll~~~~~~LkpgG~l~ 222 (289)
|-++.....++++..+.|++|..+.
T Consensus 70 vavPi~~~~~~l~~l~~~l~~g~iv~ 95 (279)
T COG0287 70 VAVPIEATEEVLKELAPHLKKGAIVT 95 (279)
T ss_pred EeccHHHHHHHHHHhcccCCCCCEEE
Confidence 5578888999999999999988765
No 411
>cd05281 TDH Threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)- dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria) and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=80.76 E-value=7.9 Score=35.37 Aligned_cols=97 Identities=16% Similarity=0.052 Sum_probs=53.6
Q ss_pred CCCeEEEEcCCC-ChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCE-EEEeccccccCCCCcCCCCceEEEE
Q 022962 121 SNLKLVDVGTGA-GLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNV-QIVRGRAETLGKDVSFREQYDVAVA 198 (289)
Q Consensus 121 ~~~~VLDiGcG~-G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni-~~~~~d~~~~~~~~~~~~~fD~V~s 198 (289)
++.+||-.|+|+ |..++.+|+.....+|++++.+++..+.+++ +|.+.+ .....+...+... ...+.+|+|+.
T Consensus 163 ~g~~vlV~g~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~~----~g~~~~~~~~~~~~~~~~~~-~~~~~vd~vld 237 (341)
T cd05281 163 SGKSVLITGCGPIGLMAIAVAKAAGASLVIASDPNPYRLELAKK----MGADVVINPREEDVVEVKSV-TDGTGVDVVLE 237 (341)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHH----hCcceeeCcccccHHHHHHH-cCCCCCCEEEE
Confidence 467888777643 4444556666543378899888776655543 454221 1111111111000 01246999997
Q ss_pred cCcccHHHHHHHHccccccCeEEEEE
Q 022962 199 RAVAEMRILAEYCLPLVRVGGLFVAA 224 (289)
Q Consensus 199 n~~~~~~~ll~~~~~~LkpgG~l~~~ 224 (289)
+... ......+.+.|+++|+++..
T Consensus 238 ~~g~--~~~~~~~~~~l~~~G~~v~~ 261 (341)
T cd05281 238 MSGN--PKAIEQGLKALTPGGRVSIL 261 (341)
T ss_pred CCCC--HHHHHHHHHHhccCCEEEEE
Confidence 5322 23455666789999998764
No 412
>PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=80.66 E-value=10 Score=32.50 Aligned_cols=77 Identities=17% Similarity=0.141 Sum_probs=50.6
Q ss_pred CCeEEEEcCCCChHHHHHHHHC--CCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCC-cC------CCC
Q 022962 122 NLKLVDVGTGAGLPGLVLAIAC--PDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDV-SF------REQ 192 (289)
Q Consensus 122 ~~~VLDiGcG~G~~~l~la~~~--p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~-~~------~~~ 192 (289)
+.++|=.|+ +|.+|..+++.+ .+.+|++++.++...+.........+ .++.++..|+.+...-. .+ -+.
T Consensus 7 ~~~vlVtG~-sg~iG~~l~~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~-~~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 84 (239)
T PRK07666 7 GKNALITGA-GRGIGRAVAIALAKEGVNVGLLARTEENLKAVAEEVEAYG-VKVVIATADVSDYEEVTAAIEQLKNELGS 84 (239)
T ss_pred CCEEEEEcC-CchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhC-CeEEEEECCCCCHHHHHHHHHHHHHHcCC
Confidence 567888995 677788887653 46799999999876655444444333 25888888886542100 00 135
Q ss_pred ceEEEEcC
Q 022962 193 YDVAVARA 200 (289)
Q Consensus 193 fD~V~sn~ 200 (289)
.|.|+.++
T Consensus 85 id~vi~~a 92 (239)
T PRK07666 85 IDILINNA 92 (239)
T ss_pred ccEEEEcC
Confidence 79999873
No 413
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=80.66 E-value=9.5 Score=33.13 Aligned_cols=77 Identities=13% Similarity=0.007 Sum_probs=52.3
Q ss_pred CCeEEEEcCCCChHHHHHHHHC--CCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCC-------cCCCC
Q 022962 122 NLKLVDVGTGAGLPGLVLAIAC--PDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDV-------SFREQ 192 (289)
Q Consensus 122 ~~~VLDiGcG~G~~~l~la~~~--p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~-------~~~~~ 192 (289)
+.+||=.|. +|.+|..+++.+ .+.+|++++.++..++.+.+.++..+. ++.++..|+.+...-. ..-+.
T Consensus 10 ~k~vlItGa-~g~iG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~i~~~~~-~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 87 (255)
T PRK07523 10 GRRALVTGS-SQGIGYALAEGLAQAGAEVILNGRDPAKLAAAAESLKGQGL-SAHALAFDVTDHDAVRAAIDAFEAEIGP 87 (255)
T ss_pred CCEEEEECC-cchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCc-eEEEEEccCCCHHHHHHHHHHHHHhcCC
Confidence 678999995 666788887654 467999999998877666555554443 4777888887632100 00135
Q ss_pred ceEEEEcC
Q 022962 193 YDVAVARA 200 (289)
Q Consensus 193 fD~V~sn~ 200 (289)
.|.|+.++
T Consensus 88 ~d~li~~a 95 (255)
T PRK07523 88 IDILVNNA 95 (255)
T ss_pred CCEEEECC
Confidence 79999884
No 414
>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=80.55 E-value=16 Score=33.10 Aligned_cols=111 Identities=14% Similarity=0.046 Sum_probs=62.7
Q ss_pred EEEEcCCCChHHHHHHHH--CCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCcCCCCceEEEEcC-c
Q 022962 125 LVDVGTGAGLPGLVLAIA--CPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARA-V 201 (289)
Q Consensus 125 VLDiGcG~G~~~l~la~~--~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~~~~~fD~V~sn~-~ 201 (289)
|-=||+| ..|..+|.. ..+.+|+..|.+++.++.+.+ .| +.. ..+..++... -...|+|++.- .
T Consensus 3 Ig~IGlG--~MG~~mA~~L~~~g~~v~v~dr~~~~~~~~~~----~g---~~~-~~~~~e~~~~---~~~~dvvi~~v~~ 69 (301)
T PRK09599 3 LGMIGLG--RMGGNMARRLLRGGHEVVGYDRNPEAVEALAE----EG---ATG-ADSLEELVAK---LPAPRVVWLMVPA 69 (301)
T ss_pred EEEEccc--HHHHHHHHHHHHCCCeEEEEECCHHHHHHHHH----CC---Cee-cCCHHHHHhh---cCCCCEEEEEecC
Confidence 4445554 555555543 245789999999987655432 33 222 2233333211 01247777652 2
Q ss_pred c-cHHHHHHHHccccccCeEEEEEEcCCcHHHHHHHHHHHHHhCCeEeE
Q 022962 202 A-EMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLLQ 249 (289)
Q Consensus 202 ~-~~~~ll~~~~~~LkpgG~l~~~~g~~~~~ei~~~~~~l~~~g~~~~~ 249 (289)
. ..+.++..+...+++|..+ +..+....+....+.+.++..|...++
T Consensus 70 ~~~~~~v~~~l~~~l~~g~iv-id~st~~~~~~~~~~~~~~~~g~~~~d 117 (301)
T PRK09599 70 GEITDATIDELAPLLSPGDIV-IDGGNSYYKDDIRRAELLAEKGIHFVD 117 (301)
T ss_pred CcHHHHHHHHHHhhCCCCCEE-EeCCCCChhHHHHHHHHHHHcCCEEEe
Confidence 2 4566777777788876544 444433444555566677788887665
No 415
>TIGR01692 HIBADH 3-hydroxyisobutyrate dehydrogenase. This enzyme belongs to the 3-hydroxyacid dehydrogenase family, sharing a common evolutionary origin and enzymatic mechanism with 6-phosphogluconate. HIBADH exhibits sequence similarity to the NAD binding domain of 6-phosphogluconate dehydrogenase above trusted (pfam03446).
Probab=80.54 E-value=13 Score=33.57 Aligned_cols=105 Identities=15% Similarity=0.107 Sum_probs=61.6
Q ss_pred CCChHHHHHHHHC--CCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCcCCCCceEEEEcCc--ccHHH
Q 022962 131 GAGLPGLVLAIAC--PDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARAV--AEMRI 206 (289)
Q Consensus 131 G~G~~~l~la~~~--p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~~~~~fD~V~sn~~--~~~~~ 206 (289)
|.|..|..+|... .+.+|++.|.+++.++.+.+ .|. .. ..+..+.. ...|+|+..-. ...+.
T Consensus 3 GlG~mG~~mA~~L~~~G~~V~v~dr~~~~~~~l~~----~g~---~~-~~s~~~~~------~~advVil~vp~~~~~~~ 68 (288)
T TIGR01692 3 GLGNMGGPMAANLLKAGHPVRVFDLFPDAVEEAVA----AGA---QA-AASPAEAA------EGADRVITMLPAGQHVIS 68 (288)
T ss_pred cccHhHHHHHHHHHhCCCeEEEEeCCHHHHHHHHH----cCC---ee-cCCHHHHH------hcCCEEEEeCCChHHHHH
Confidence 6667777776543 45699999999887665443 232 21 22322221 34688886532 33456
Q ss_pred HH---HHHccccccCeEEEEEEcCCcHHHHHHHHHHHHHhCCeEeEE
Q 022962 207 LA---EYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLLQL 250 (289)
Q Consensus 207 ll---~~~~~~LkpgG~l~~~~g~~~~~ei~~~~~~l~~~g~~~~~~ 250 (289)
++ +.+...+++|-.+ +..+....+...++.+.+.+.|...++.
T Consensus 69 v~~g~~~l~~~~~~g~~v-id~st~~p~~~~~~~~~~~~~g~~~vda 114 (288)
T TIGR01692 69 VYSGDEGILPKVAKGSLL-IDCSTIDPDSARKLAELAAAHGAVFMDA 114 (288)
T ss_pred HHcCcchHhhcCCCCCEE-EECCCCCHHHHHHHHHHHHHcCCcEEEC
Confidence 66 5566667666554 4444444455566667777788776554
No 416
>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase
Probab=80.37 E-value=9.4 Score=40.91 Aligned_cols=73 Identities=15% Similarity=0.115 Sum_probs=40.1
Q ss_pred CCeEEEEcCCC-ChHHHHHHHHCCCCE-------------EEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCC
Q 022962 122 NLKLVDVGTGA-GLPGLVLAIACPDWK-------------VTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDV 187 (289)
Q Consensus 122 ~~~VLDiGcG~-G~~~l~la~~~p~~~-------------V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~ 187 (289)
..+|+=||||- |..........++.+ |+..|++.+..+ +.++.. .+++.+..|+.+...-.
T Consensus 569 ~~rIlVLGAG~VG~~~a~~La~~~~~~~~~~~~~~~~~~lV~VaD~~~~~a~---~la~~~--~~~~~v~lDv~D~e~L~ 643 (1042)
T PLN02819 569 SQNVLILGAGRVCRPAAEYLASVKTISYYGDDSEEPTDVHVIVASLYLKDAK---ETVEGI--ENAEAVQLDVSDSESLL 643 (1042)
T ss_pred CCcEEEECCCHHHHHHHHHHHhCcCccccccccccccccEEEEECCCHHHHH---HHHHhc--CCCceEEeecCCHHHHH
Confidence 56899999862 433333222335544 888999976644 333332 24555555554432110
Q ss_pred cCCCCceEEEEc
Q 022962 188 SFREQYDVAVAR 199 (289)
Q Consensus 188 ~~~~~fD~V~sn 199 (289)
..-...|+|++-
T Consensus 644 ~~v~~~DaVIsa 655 (1042)
T PLN02819 644 KYVSQVDVVISL 655 (1042)
T ss_pred HhhcCCCEEEEC
Confidence 110348999986
No 417
>TIGR00692 tdh L-threonine 3-dehydrogenase. E. coli His-90 modulates substrate specificity and is believed part of the active site.
Probab=80.35 E-value=7.9 Score=35.34 Aligned_cols=96 Identities=20% Similarity=0.126 Sum_probs=53.4
Q ss_pred CCCeEEEEcCC-CChHHHHHHHHCCCCE-EEEEeCChHHHHHHHHHHHHcCCCCE-EEEeccccc-cCCCCcCCCCceEE
Q 022962 121 SNLKLVDVGTG-AGLPGLVLAIACPDWK-VTLLESMNKRCVFLEHAVSLTQLLNV-QIVRGRAET-LGKDVSFREQYDVA 196 (289)
Q Consensus 121 ~~~~VLDiGcG-~G~~~l~la~~~p~~~-V~~iD~s~~~l~~a~~~~~~~~l~ni-~~~~~d~~~-~~~~~~~~~~fD~V 196 (289)
++.+||-.|+| .|..++.+|+.. +.+ |++++.++...+.+++ ++.+.+ .....+..+ +... ...+.+|+|
T Consensus 161 ~g~~vlI~~~g~vg~~a~~la~~~-G~~~v~~~~~~~~~~~~~~~----~g~~~~v~~~~~~~~~~l~~~-~~~~~~d~v 234 (340)
T TIGR00692 161 SGKSVLVTGAGPIGLMAIAVAKAS-GAYPVIVSDPNEYRLELAKK----MGATYVVNPFKEDVVKEVADL-TDGEGVDVF 234 (340)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHc-CCcEEEEECCCHHHHHHHHH----hCCcEEEcccccCHHHHHHHh-cCCCCCCEE
Confidence 46778776654 233445566655 454 8899888876655543 454321 111111111 1000 012469999
Q ss_pred EEcCcccHHHHHHHHccccccCeEEEEE
Q 022962 197 VARAVAEMRILAEYCLPLVRVGGLFVAA 224 (289)
Q Consensus 197 ~sn~~~~~~~ll~~~~~~LkpgG~l~~~ 224 (289)
+-.... ...+..+.+.|+++|+++..
T Consensus 235 ld~~g~--~~~~~~~~~~l~~~g~~v~~ 260 (340)
T TIGR00692 235 LEMSGA--PKALEQGLQAVTPGGRVSLL 260 (340)
T ss_pred EECCCC--HHHHHHHHHhhcCCCEEEEE
Confidence 975332 24566777889999998764
No 418
>PRK05396 tdh L-threonine 3-dehydrogenase; Validated
Probab=80.35 E-value=7 Score=35.68 Aligned_cols=97 Identities=13% Similarity=0.165 Sum_probs=54.6
Q ss_pred CCeEEEEcCCC-ChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEE-EEeccccc-cCCCCcCCCCceEEEE
Q 022962 122 NLKLVDVGTGA-GLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQ-IVRGRAET-LGKDVSFREQYDVAVA 198 (289)
Q Consensus 122 ~~~VLDiGcG~-G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~-~~~~d~~~-~~~~~~~~~~fD~V~s 198 (289)
+.+||=.|+|. |..++.+|+.....+|++++.+++..+.+++ +|.+.+- ....+..+ +.. ....+.+|+|+-
T Consensus 164 g~~vlV~~~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~~----lg~~~~~~~~~~~~~~~~~~-~~~~~~~d~v~d 238 (341)
T PRK05396 164 GEDVLITGAGPIGIMAAAVAKHVGARHVVITDVNEYRLELARK----MGATRAVNVAKEDLRDVMAE-LGMTEGFDVGLE 238 (341)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHH----hCCcEEecCccccHHHHHHH-hcCCCCCCEEEE
Confidence 67787777653 4444556666543378899988877666543 4543211 11111101 100 011246899986
Q ss_pred cCcccHHHHHHHHccccccCeEEEEEE
Q 022962 199 RAVAEMRILAEYCLPLVRVGGLFVAAK 225 (289)
Q Consensus 199 n~~~~~~~ll~~~~~~LkpgG~l~~~~ 225 (289)
.... ...+..+.+.|+++|.++...
T Consensus 239 ~~g~--~~~~~~~~~~l~~~G~~v~~g 263 (341)
T PRK05396 239 MSGA--PSAFRQMLDNMNHGGRIAMLG 263 (341)
T ss_pred CCCC--HHHHHHHHHHHhcCCEEEEEe
Confidence 4322 335666677899999998764
No 419
>KOG2539 consensus Mitochondrial/chloroplast ribosome small subunit component [Translation, ribosomal structure and biogenesis]
Probab=80.10 E-value=6.7 Score=37.94 Aligned_cols=98 Identities=16% Similarity=0.138 Sum_probs=58.0
Q ss_pred CCeEEEEcCCCChHHHHHHHHC-C--CCEEEEEeCChHHHHHHHHHHHH---cCC---CCEEEEeccccccCCCCcCCCC
Q 022962 122 NLKLVDVGTGAGLPGLVLAIAC-P--DWKVTLLESMNKRCVFLEHAVSL---TQL---LNVQIVRGRAETLGKDVSFREQ 192 (289)
Q Consensus 122 ~~~VLDiGcG~G~~~l~la~~~-p--~~~V~~iD~s~~~l~~a~~~~~~---~~l---~ni~~~~~d~~~~~~~~~~~~~ 192 (289)
...+.|+|.|.|.- ..++... + .-.++.||.+..|......+.+. .|- .++.+....+ +. ...+.
T Consensus 201 pd~~~dfgsg~~~~-~~a~~~lwr~t~~~~~~Vdrs~~~~~~~e~~lr~~~~~g~~~v~~~~~~r~~~---pi--~~~~~ 274 (491)
T KOG2539|consen 201 PDLLRDFGSGAGNG-GWAAVLLWRQTKREYSLVDRSRAMLKQSEKNLRDGSHIGEPIVRKLVFHRQRL---PI--DIKNG 274 (491)
T ss_pred hHHHHHHHhhcccc-hhhhhhhcccccceeEeeccchHHHHHHHHhhcChhhcCchhccccchhcccC---CC--Ccccc
Confidence 56788998887753 2333332 2 35799999999999988877655 111 1112222211 11 12356
Q ss_pred ceEEEEcC--------cccHHHHHHHHccccccCeEEEEEE
Q 022962 193 YDVAVARA--------VAEMRILAEYCLPLVRVGGLFVAAK 225 (289)
Q Consensus 193 fD~V~sn~--------~~~~~~ll~~~~~~LkpgG~l~~~~ 225 (289)
||+|++.- +......-.-.....++||.+++..
T Consensus 275 yDlvi~ah~l~~~~s~~~R~~v~~s~~r~~~r~g~~lViIe 315 (491)
T KOG2539|consen 275 YDLVICAHKLHELGSKFSRLDVPESLWRKTDRSGYFLVIIE 315 (491)
T ss_pred eeeEEeeeeeeccCCchhhhhhhHHHHHhccCCCceEEEEe
Confidence 99999862 2122333345566788899988765
No 420
>PRK05599 hypothetical protein; Provisional
Probab=80.07 E-value=8.3 Score=33.56 Aligned_cols=76 Identities=13% Similarity=0.083 Sum_probs=51.3
Q ss_pred eEEEEcCCCChHHHHHHHHC-CCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCC-------cCCCCceE
Q 022962 124 KLVDVGTGAGLPGLVLAIAC-PDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDV-------SFREQYDV 195 (289)
Q Consensus 124 ~VLDiGcG~G~~~l~la~~~-p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~-------~~~~~fD~ 195 (289)
++|=.|+++|+ |..+|+.+ .+.+|+.++.+++.++.+.+.++..+-..+.++..|+.+...-. ...+..|+
T Consensus 2 ~vlItGas~GI-G~aia~~l~~g~~Vil~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~id~ 80 (246)
T PRK05599 2 SILILGGTSDI-AGEIATLLCHGEDVVLAARRPEAAQGLASDLRQRGATSVHVLSFDAQDLDTHRELVKQTQELAGEISL 80 (246)
T ss_pred eEEEEeCccHH-HHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhccCCceEEEEcccCCHHHHHHHHHHHHHhcCCCCE
Confidence 47777887764 77777643 46899999999888776666665555434778888887643210 01246899
Q ss_pred EEEcC
Q 022962 196 AVARA 200 (289)
Q Consensus 196 V~sn~ 200 (289)
++.|+
T Consensus 81 lv~na 85 (246)
T PRK05599 81 AVVAF 85 (246)
T ss_pred EEEec
Confidence 99873
No 421
>PTZ00142 6-phosphogluconate dehydrogenase; Provisional
Probab=80.03 E-value=22 Score=34.67 Aligned_cols=118 Identities=14% Similarity=0.148 Sum_probs=68.4
Q ss_pred EEEEcCCCChHHHHHHHH--CCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCcCCCCceEEEEc--C
Q 022962 125 LVDVGTGAGLPGLVLAIA--CPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVAR--A 200 (289)
Q Consensus 125 VLDiGcG~G~~~l~la~~--~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~~~~~fD~V~sn--~ 200 (289)
|-=||.| ..|..+|.. ..+.+|++.|.+++.++...+.....|. ++. ...+++++.... ...|+|+.. +
T Consensus 4 IgvIGLG--~MG~~lA~nL~~~G~~V~v~dr~~~~~~~l~~~~~~~g~-~i~-~~~s~~e~v~~l---~~~d~Iil~v~~ 76 (470)
T PTZ00142 4 IGLIGLA--VMGQNLALNIASRGFKISVYNRTYEKTEEFVKKAKEGNT-RVK-GYHTLEELVNSL---KKPRKVILLIKA 76 (470)
T ss_pred EEEEeEh--HHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHhhhhcCC-cce-ecCCHHHHHhcC---CCCCEEEEEeCC
Confidence 4445555 344444433 3467999999999988777654333342 232 233444432210 235766654 3
Q ss_pred cccHHHHHHHHccccccCeEEEEEEcCCcHHHHHHHHHHHHHhCCeEeEE
Q 022962 201 VAEMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLLQL 250 (289)
Q Consensus 201 ~~~~~~ll~~~~~~LkpgG~l~~~~g~~~~~ei~~~~~~l~~~g~~~~~~ 250 (289)
....+.+++.+...|++|-.+ +-.+.....+.....+.+...|...++.
T Consensus 77 ~~~v~~vi~~l~~~L~~g~iI-ID~gn~~~~dt~~r~~~l~~~Gi~flda 125 (470)
T PTZ00142 77 GEAVDETIDNLLPLLEKGDII-IDGGNEWYLNTERRIKRCEEKGILYLGM 125 (470)
T ss_pred hHHHHHHHHHHHhhCCCCCEE-EECCCCCHHHHHHHHHHHHHcCCeEEcC
Confidence 445677888888888877554 4444444445455556777788776654
No 422
>COG1565 Uncharacterized conserved protein [Function unknown]
Probab=79.88 E-value=5.3 Score=37.47 Aligned_cols=47 Identities=21% Similarity=0.278 Sum_probs=35.8
Q ss_pred CCeEEEEcCCCChHHHHHHHH----CC----CCEEEEEeCChHHHHHHHHHHHHc
Q 022962 122 NLKLVDVGTGAGLPGLVLAIA----CP----DWKVTLLESMNKRCVFLEHAVSLT 168 (289)
Q Consensus 122 ~~~VLDiGcG~G~~~l~la~~----~p----~~~V~~iD~s~~~l~~a~~~~~~~ 168 (289)
.-.+++||.|+|.++..+.+. +| ..++..||+|++..+.=+++.+..
T Consensus 78 ~~~lvEiGaG~G~l~~DiL~~l~~L~P~~~~~~~~~iiE~s~~L~~~Qk~~L~~~ 132 (370)
T COG1565 78 PLKLVEIGAGRGTLASDILRTLRRLYPELYEALSYYIIEPSPELRARQKETLKAT 132 (370)
T ss_pred CceEEEeCCCcChHHHHHHHHHHHhCHHHHhcceEEEEecCHHHHHHHHHHHhcc
Confidence 457999999999998777543 34 689999999998766655555443
No 423
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=79.82 E-value=14 Score=33.62 Aligned_cols=96 Identities=17% Similarity=0.105 Sum_probs=54.6
Q ss_pred CeEEEEcCCCChHHHHHHHHC--CC--CEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCcCCCCceEEEE
Q 022962 123 LKLVDVGTGAGLPGLVLAIAC--PD--WKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVA 198 (289)
Q Consensus 123 ~~VLDiGcG~G~~~l~la~~~--p~--~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~~~~~fD~V~s 198 (289)
.+|.=||+| .+|..++... .+ .+|+++|.+++.++.++ ..|.. .. ...+..+. -...|+|+.
T Consensus 7 ~~I~IIG~G--~mG~sla~~l~~~g~~~~V~~~dr~~~~~~~a~----~~g~~-~~-~~~~~~~~------~~~aDvVii 72 (307)
T PRK07502 7 DRVALIGIG--LIGSSLARAIRRLGLAGEIVGADRSAETRARAR----ELGLG-DR-VTTSAAEA------VKGADLVIL 72 (307)
T ss_pred cEEEEEeeC--HHHHHHHHHHHhcCCCcEEEEEECCHHHHHHHH----hCCCC-ce-ecCCHHHH------hcCCCEEEE
Confidence 468888866 4444444321 12 48999999998766554 34431 11 11222221 135799987
Q ss_pred cC-cccHHHHHHHHccccccCeEEEEEEcCCcHHHH
Q 022962 199 RA-VAEMRILAEYCLPLVRVGGLFVAAKGHDPQEEV 233 (289)
Q Consensus 199 n~-~~~~~~ll~~~~~~LkpgG~l~~~~g~~~~~ei 233 (289)
.. ......+++.+...+++|+.++. .+......+
T Consensus 73 avp~~~~~~v~~~l~~~l~~~~iv~d-vgs~k~~~~ 107 (307)
T PRK07502 73 CVPVGASGAVAAEIAPHLKPGAIVTD-VGSVKASVI 107 (307)
T ss_pred CCCHHHHHHHHHHHHhhCCCCCEEEe-CccchHHHH
Confidence 64 34456777777788888876543 444333333
No 424
>cd08238 sorbose_phosphate_red L-sorbose-1-phosphate reductase. L-sorbose-1-phosphate reductase, a member of the MDR family, catalyzes the NADPH-dependent conversion of l-sorbose 1-phosphate to d-glucitol 6-phosphate in the metabolism of L-sorbose to (also converts d-fructose 1-phosphate to d-mannitol 6-phosphate). The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the found
Probab=79.77 E-value=6.7 Score=37.21 Aligned_cols=104 Identities=14% Similarity=0.089 Sum_probs=57.7
Q ss_pred CCCCeEEEEcC-C-CChHHHHHHHHCC--CCEEEEEeCChHHHHHHHHHHHHc----CCCCEEEEec----cccccCCCC
Q 022962 120 NSNLKLVDVGT-G-AGLPGLVLAIACP--DWKVTLLESMNKRCVFLEHAVSLT----QLLNVQIVRG----RAETLGKDV 187 (289)
Q Consensus 120 ~~~~~VLDiGc-G-~G~~~l~la~~~p--~~~V~~iD~s~~~l~~a~~~~~~~----~l~ni~~~~~----d~~~~~~~~ 187 (289)
+++.+|+=+|+ | .|..++.+|+... ..+|+++|.+++.++.+++..... |.+ ..++.. +..+.-...
T Consensus 174 ~~g~~VlV~G~~G~vG~~aiq~ak~~G~g~~~Vi~~~~~~~r~~~a~~~~~~~~~~~Ga~-~~~i~~~~~~~~~~~v~~~ 252 (410)
T cd08238 174 KPGGNTAILGGAGPMGLMAIDYAIHGPIGPSLLVVTDVNDERLARAQRLFPPEAASRGIE-LLYVNPATIDDLHATLMEL 252 (410)
T ss_pred CCCCEEEEEeCCCHHHHHHHHHHHhcccCCceEEEEcCCHHHHHHHHHhccccccccCce-EEEECCCccccHHHHHHHH
Confidence 45788988874 3 4555555666542 248999999999988887731110 221 122211 111100000
Q ss_pred cCCCCceEEEEcCcccHHHHHHHHccccccCeEEEEEEc
Q 022962 188 SFREQYDVAVARAVAEMRILAEYCLPLVRVGGLFVAAKG 226 (289)
Q Consensus 188 ~~~~~fD~V~sn~~~~~~~ll~~~~~~LkpgG~l~~~~g 226 (289)
.....||+|+-..-. ...+..+.+.++++|.+++..+
T Consensus 253 t~g~g~D~vid~~g~--~~~~~~a~~~l~~~G~~v~~~g 289 (410)
T cd08238 253 TGGQGFDDVFVFVPV--PELVEEADTLLAPDGCLNFFAG 289 (410)
T ss_pred hCCCCCCEEEEcCCC--HHHHHHHHHHhccCCeEEEEEc
Confidence 012368988864211 3456667788998887765543
No 425
>PRK06172 short chain dehydrogenase; Provisional
Probab=79.56 E-value=11 Score=32.53 Aligned_cols=77 Identities=14% Similarity=-0.045 Sum_probs=51.5
Q ss_pred CCeEEEEcCCCChHHHHHHHHC--CCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCC-------cCCCC
Q 022962 122 NLKLVDVGTGAGLPGLVLAIAC--PDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDV-------SFREQ 192 (289)
Q Consensus 122 ~~~VLDiGcG~G~~~l~la~~~--p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~-------~~~~~ 192 (289)
+.++|=.|+++ .+|..+++.+ .+.+|++++.+++.+..+.+..+..+. ++.++..|+.+...-. ..-++
T Consensus 7 ~k~ilItGas~-~iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~D~~~~~~i~~~~~~~~~~~g~ 84 (253)
T PRK06172 7 GKVALVTGGAA-GIGRATALAFAREGAKVVVADRDAAGGEETVALIREAGG-EALFVACDVTRDAEVKALVEQTIAAYGR 84 (253)
T ss_pred CCEEEEeCCCc-hHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCC-ceEEEEcCCCCHHHHHHHHHHHHHHhCC
Confidence 67899999755 4677777553 357999999998876666555555442 5888888887532100 00135
Q ss_pred ceEEEEcC
Q 022962 193 YDVAVARA 200 (289)
Q Consensus 193 fD~V~sn~ 200 (289)
.|.|+.++
T Consensus 85 id~li~~a 92 (253)
T PRK06172 85 LDYAFNNA 92 (253)
T ss_pred CCEEEECC
Confidence 79999873
No 426
>cd08277 liver_alcohol_DH_like Liver alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ i
Probab=79.50 E-value=15 Score=34.03 Aligned_cols=95 Identities=13% Similarity=0.061 Sum_probs=54.6
Q ss_pred CCCCeEEEEcCCCChHHHH---HHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCE-EEEecc--c-cccCCCCcCCCC
Q 022962 120 NSNLKLVDVGTGAGLPGLV---LAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNV-QIVRGR--A-ETLGKDVSFREQ 192 (289)
Q Consensus 120 ~~~~~VLDiGcG~G~~~l~---la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni-~~~~~d--~-~~~~~~~~~~~~ 192 (289)
.++.+||=.|+ |.+|+. +|+.....+|+++|.++...+.+++ +|.+.+ .....+ + +.+... ....
T Consensus 183 ~~g~~vlV~G~--g~vG~~~~~~a~~~G~~~Vi~~~~~~~~~~~~~~----~ga~~~i~~~~~~~~~~~~~~~~--~~~g 254 (365)
T cd08277 183 EPGSTVAVFGL--GAVGLSAIMGAKIAGASRIIGVDINEDKFEKAKE----FGATDFINPKDSDKPVSEVIREM--TGGG 254 (365)
T ss_pred CCCCEEEEECC--CHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHH----cCCCcEeccccccchHHHHHHHH--hCCC
Confidence 45788888876 455544 5555543479999999988777643 455322 111100 0 111100 1135
Q ss_pred ceEEEEcCcccHHHHHHHHccccccC-eEEEEE
Q 022962 193 YDVAVARAVAEMRILAEYCLPLVRVG-GLFVAA 224 (289)
Q Consensus 193 fD~V~sn~~~~~~~ll~~~~~~Lkpg-G~l~~~ 224 (289)
+|+|+-..-. ...+..+.+.++++ |+++..
T Consensus 255 ~d~vid~~g~--~~~~~~~~~~l~~~~G~~v~~ 285 (365)
T cd08277 255 VDYSFECTGN--ADLMNEALESTKLGWGVSVVV 285 (365)
T ss_pred CCEEEECCCC--hHHHHHHHHhcccCCCEEEEE
Confidence 8999854321 24566677788885 998764
No 427
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=79.43 E-value=14 Score=31.24 Aligned_cols=88 Identities=20% Similarity=0.202 Sum_probs=48.1
Q ss_pred CCChHHHHHHHHC--CCCEEEEEeCChHHHHHHHHH------------HHHcC-CCCEEEEeccccccCCCCcCCCCceE
Q 022962 131 GAGLPGLVLAIAC--PDWKVTLLESMNKRCVFLEHA------------VSLTQ-LLNVQIVRGRAETLGKDVSFREQYDV 195 (289)
Q Consensus 131 G~G~~~l~la~~~--p~~~V~~iD~s~~~l~~a~~~------------~~~~~-l~ni~~~~~d~~~~~~~~~~~~~fD~ 195 (289)
|.|+.|+.+|..+ .+.+|+|+|++++.++..++- .++.. -.++++. .|.++.. ...|+
T Consensus 7 GlGyvGl~~A~~lA~~G~~V~g~D~~~~~v~~l~~g~~p~~E~~l~~ll~~~~~~~~l~~t-~~~~~ai------~~adv 79 (185)
T PF03721_consen 7 GLGYVGLPLAAALAEKGHQVIGVDIDEEKVEALNNGELPIYEPGLDELLKENVSAGRLRAT-TDIEEAI------KDADV 79 (185)
T ss_dssp --STTHHHHHHHHHHTTSEEEEE-S-HHHHHHHHTTSSSS-CTTHHHHHHHHHHTTSEEEE-SEHHHHH------HH-SE
T ss_pred CCCcchHHHHHHHHhCCCEEEEEeCChHHHHHHhhccccccccchhhhhccccccccchhh-hhhhhhh------hccce
Confidence 5567777766543 468999999999988877641 11110 1234332 2333211 23577
Q ss_pred EEEc-C----------cccHHHHHHHHccccccCeEEEEEE
Q 022962 196 AVAR-A----------VAEMRILAEYCLPLVRVGGLFVAAK 225 (289)
Q Consensus 196 V~sn-~----------~~~~~~ll~~~~~~LkpgG~l~~~~ 225 (289)
++.. . ...+...++.+.+.++++-.+++.+
T Consensus 80 ~~I~VpTP~~~~~~~Dls~v~~a~~~i~~~l~~~~lvV~~S 120 (185)
T PF03721_consen 80 VFICVPTPSDEDGSPDLSYVESAIESIAPVLRPGDLVVIES 120 (185)
T ss_dssp EEE----EBETTTSBETHHHHHHHHHHHHHHCSCEEEEESS
T ss_pred EEEecCCCccccCCccHHHHHHHHHHHHHHHhhcceEEEcc
Confidence 6643 1 2246788889999999966666543
No 428
>COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]
Probab=78.93 E-value=8.1 Score=35.72 Aligned_cols=98 Identities=14% Similarity=0.088 Sum_probs=55.8
Q ss_pred CCCCeEEEEcCCCC--hHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCC-EEEEeccccccCCCCcCCCCceEE
Q 022962 120 NSNLKLVDVGTGAG--LPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLN-VQIVRGRAETLGKDVSFREQYDVA 196 (289)
Q Consensus 120 ~~~~~VLDiGcG~G--~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~n-i~~~~~d~~~~~~~~~~~~~fD~V 196 (289)
+++.+||=.|..+| .+++-||+.... .++++-.+++..+++ +++|.+. +.+...|+.+--........+|+|
T Consensus 141 ~~g~~VLV~gaaGgVG~~aiQlAk~~G~-~~v~~~~s~~k~~~~----~~lGAd~vi~y~~~~~~~~v~~~t~g~gvDvv 215 (326)
T COG0604 141 KPGETVLVHGAAGGVGSAAIQLAKALGA-TVVAVVSSSEKLELL----KELGADHVINYREEDFVEQVRELTGGKGVDVV 215 (326)
T ss_pred CCCCEEEEecCCchHHHHHHHHHHHcCC-cEEEEecCHHHHHHH----HhcCCCEEEcCCcccHHHHHHHHcCCCCceEE
Confidence 34789999986554 466667777644 666666666554443 4466543 332233332211111112469999
Q ss_pred EEcCcccHHHHHHHHccccccCeEEEEEE
Q 022962 197 VARAVAEMRILAEYCLPLVRVGGLFVAAK 225 (289)
Q Consensus 197 ~sn~~~~~~~ll~~~~~~LkpgG~l~~~~ 225 (289)
+-.--. ..+......|+++|+++.+-
T Consensus 216 ~D~vG~---~~~~~~l~~l~~~G~lv~ig 241 (326)
T COG0604 216 LDTVGG---DTFAASLAALAPGGRLVSIG 241 (326)
T ss_pred EECCCH---HHHHHHHHHhccCCEEEEEe
Confidence 865322 23334556789999998754
No 429
>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating). This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.
Probab=78.82 E-value=14 Score=33.50 Aligned_cols=112 Identities=12% Similarity=0.062 Sum_probs=62.9
Q ss_pred EEEEcCCCChHHHHHHHH--CCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCcCCCCceEEEEc-Cc
Q 022962 125 LVDVGTGAGLPGLVLAIA--CPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVAR-AV 201 (289)
Q Consensus 125 VLDiGcG~G~~~l~la~~--~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~~~~~fD~V~sn-~~ 201 (289)
|-=||+| .+|..+|.. ..+.+|++.|.+++.++.+++ .+.. . ..+..++... -...|+|+.. ..
T Consensus 3 Ig~IGlG--~mG~~la~~L~~~g~~V~~~dr~~~~~~~l~~----~g~~-~---~~s~~~~~~~---~~~~dvIi~~vp~ 69 (298)
T TIGR00872 3 LGLIGLG--RMGANIVRRLAKRGHDCVGYDHDQDAVKAMKE----DRTT-G---VANLRELSQR---LSAPRVVWVMVPH 69 (298)
T ss_pred EEEEcch--HHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH----cCCc-c---cCCHHHHHhh---cCCCCEEEEEcCc
Confidence 4446665 555555543 246799999999987665543 2321 1 1233332111 0246888865 33
Q ss_pred ccHHHHHHHHccccccCeEEEEEEcCCcHHHHHHHHHHHHHhCCeEeEE
Q 022962 202 AEMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLLQL 250 (289)
Q Consensus 202 ~~~~~ll~~~~~~LkpgG~l~~~~g~~~~~ei~~~~~~l~~~g~~~~~~ 250 (289)
...+.+++++...|++|-.+ +..+.....+..+..+.++..|...++.
T Consensus 70 ~~~~~v~~~l~~~l~~g~iv-id~st~~~~~t~~~~~~~~~~g~~~vda 117 (298)
T TIGR00872 70 GIVDAVLEELAPTLEKGDIV-IDGGNSYYKDSLRRYKLLKEKGIHLLDC 117 (298)
T ss_pred hHHHHHHHHHHhhCCCCCEE-EECCCCCcccHHHHHHHHHhcCCeEEec
Confidence 35678888888888877544 4443333233444455566778765543
No 430
>cd08279 Zn_ADH_class_III Class III alcohol dehydrogenase. Glutathione-dependent formaldehyde dehydrogenases (FDHs, Class III ADH) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also known as glutathione-dependent formaldehyde dehydrogenase (FDH), which convert aldehydes to corresponding carboxylic acid and alcohol. ADH is a me
Probab=78.79 E-value=7.6 Score=35.97 Aligned_cols=96 Identities=14% Similarity=0.126 Sum_probs=56.4
Q ss_pred CCCCeEEEEcCC-CChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccc----cCCCCcCCCCce
Q 022962 120 NSNLKLVDVGTG-AGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAET----LGKDVSFREQYD 194 (289)
Q Consensus 120 ~~~~~VLDiGcG-~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~----~~~~~~~~~~fD 194 (289)
.++.+||-.|+| .|..++.+|+..+...|++++.++...+.++ .+|.+ .++..+-.+ +... .....+|
T Consensus 181 ~~g~~vLI~g~g~vG~a~i~lak~~G~~~Vi~~~~~~~~~~~~~----~~g~~--~vv~~~~~~~~~~l~~~-~~~~~vd 253 (363)
T cd08279 181 RPGDTVAVIGCGGVGLNAIQGARIAGASRIIAVDPVPEKLELAR----RFGAT--HTVNASEDDAVEAVRDL-TDGRGAD 253 (363)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHHH----HhCCe--EEeCCCCccHHHHHHHH-cCCCCCC
Confidence 457788888764 3445556676654335999999888766553 34542 222211111 1000 0124699
Q ss_pred EEEEcCcccHHHHHHHHccccccCeEEEEE
Q 022962 195 VAVARAVAEMRILAEYCLPLVRVGGLFVAA 224 (289)
Q Consensus 195 ~V~sn~~~~~~~ll~~~~~~LkpgG~l~~~ 224 (289)
+++...-. ...+..+.+.|+++|+++..
T Consensus 254 ~vld~~~~--~~~~~~~~~~l~~~G~~v~~ 281 (363)
T cd08279 254 YAFEAVGR--AATIRQALAMTRKGGTAVVV 281 (363)
T ss_pred EEEEcCCC--hHHHHHHHHHhhcCCeEEEE
Confidence 98864321 24566777889999998765
No 431
>cd08231 MDR_TM0436_like Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH). This group contains the hypothetical TM0436 alcohol dehydrogenase from Thermotoga maritima, proteins annotated as 5-exo-alcohol dehydrogenase, and other members of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. MDR, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quino
Probab=78.66 E-value=15 Score=33.82 Aligned_cols=94 Identities=17% Similarity=0.109 Sum_probs=53.9
Q ss_pred CCCeEEEEcCCCChHHHH---HHHHCCCC-EEEEEeCChHHHHHHHHHHHHcCCCCEEEEec-ccc----ccCCCCcCCC
Q 022962 121 SNLKLVDVGTGAGLPGLV---LAIACPDW-KVTLLESMNKRCVFLEHAVSLTQLLNVQIVRG-RAE----TLGKDVSFRE 191 (289)
Q Consensus 121 ~~~~VLDiGcG~G~~~l~---la~~~p~~-~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~-d~~----~~~~~~~~~~ 191 (289)
++.+||=.|+ |.+|.. +|+.. +. +|++++.+++..+.++ .+|.+.+-.... +.. .+... ....
T Consensus 177 ~g~~vlI~g~--g~vG~~~~~lak~~-G~~~v~~~~~~~~~~~~~~----~~g~~~vi~~~~~~~~~~~~~i~~~-~~~~ 248 (361)
T cd08231 177 AGDTVVVQGA--GPLGLYAVAAAKLA-GARRVIVIDGSPERLELAR----EFGADATIDIDELPDPQRRAIVRDI-TGGR 248 (361)
T ss_pred CCCEEEEECC--CHHHHHHHHHHHHc-CCCeEEEEcCCHHHHHHHH----HcCCCeEEcCcccccHHHHHHHHHH-hCCC
Confidence 4778888775 555544 45554 45 8999999988766553 356533211111 110 11000 0124
Q ss_pred CceEEEEcCcccHHHHHHHHccccccCeEEEEE
Q 022962 192 QYDVAVARAVAEMRILAEYCLPLVRVGGLFVAA 224 (289)
Q Consensus 192 ~fD~V~sn~~~~~~~ll~~~~~~LkpgG~l~~~ 224 (289)
.+|+|+-..-. ...+..+.+.|+++|+++..
T Consensus 249 ~~d~vid~~g~--~~~~~~~~~~l~~~G~~v~~ 279 (361)
T cd08231 249 GADVVIEASGH--PAAVPEGLELLRRGGTYVLV 279 (361)
T ss_pred CCcEEEECCCC--hHHHHHHHHHhccCCEEEEE
Confidence 69999865321 23556667889999999864
No 432
>cd08263 Zn_ADH10 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subu
Probab=78.66 E-value=7.5 Score=36.02 Aligned_cols=95 Identities=18% Similarity=0.157 Sum_probs=53.4
Q ss_pred CCCeEEEEcCC-CChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccc----cCCCCcCCCCceE
Q 022962 121 SNLKLVDVGTG-AGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAET----LGKDVSFREQYDV 195 (289)
Q Consensus 121 ~~~~VLDiGcG-~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~----~~~~~~~~~~fD~ 195 (289)
++.+||=.|+| .|..++.+|+......|++++.+++..+.+++ ++.+. ++..+-.+ +... ..+..+|+
T Consensus 187 ~g~~VlI~g~g~vG~~~~~lak~~G~~~vi~~~~s~~~~~~~~~----~g~~~--v~~~~~~~~~~~l~~~-~~~~~~d~ 259 (367)
T cd08263 187 PGETVAVIGVGGVGSSAIQLAKAFGASPIIAVDVRDEKLAKAKE----LGATH--TVNAAKEDAVAAIREI-TGGRGVDV 259 (367)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHH----hCCce--EecCCcccHHHHHHHH-hCCCCCCE
Confidence 46778766543 23333445555543349999998877666543 45432 22211111 1000 01246999
Q ss_pred EEEcCcccHHHHHHHHccccccCeEEEEE
Q 022962 196 AVARAVAEMRILAEYCLPLVRVGGLFVAA 224 (289)
Q Consensus 196 V~sn~~~~~~~ll~~~~~~LkpgG~l~~~ 224 (289)
|+...-.. ..++.+.+.|+++|+++..
T Consensus 260 vld~vg~~--~~~~~~~~~l~~~G~~v~~ 286 (367)
T cd08263 260 VVEALGKP--ETFKLALDVVRDGGRAVVV 286 (367)
T ss_pred EEEeCCCH--HHHHHHHHHHhcCCEEEEE
Confidence 99653221 3567778899999998865
No 433
>PRK06128 oxidoreductase; Provisional
Probab=78.49 E-value=11 Score=33.80 Aligned_cols=101 Identities=15% Similarity=0.051 Sum_probs=59.9
Q ss_pred CCeEEEEcCCCChHHHHHHHHC--CCCEEEEEeCChH--HHHHHHHHHHHcCCCCEEEEeccccccCCCC-------cCC
Q 022962 122 NLKLVDVGTGAGLPGLVLAIAC--PDWKVTLLESMNK--RCVFLEHAVSLTQLLNVQIVRGRAETLGKDV-------SFR 190 (289)
Q Consensus 122 ~~~VLDiGcG~G~~~l~la~~~--p~~~V~~iD~s~~--~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~-------~~~ 190 (289)
+.+||=.|++ |.+|..+++.+ .+.+|+.++.+.+ ..+...+.++..+. ++.++..|+.+...-. ..-
T Consensus 55 ~k~vlITGas-~gIG~~~a~~l~~~G~~V~i~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~Dl~~~~~v~~~~~~~~~~~ 132 (300)
T PRK06128 55 GRKALITGAD-SGIGRATAIAFAREGADIALNYLPEEEQDAAEVVQLIQAEGR-KAVALPGDLKDEAFCRQLVERAVKEL 132 (300)
T ss_pred CCEEEEecCC-CcHHHHHHHHHHHcCCEEEEEeCCcchHHHHHHHHHHHHcCC-eEEEEecCCCCHHHHHHHHHHHHHHh
Confidence 5789999964 45687877654 4678887766532 22223333333343 4777888887632100 001
Q ss_pred CCceEEEEcCc-----c-------------------cHHHHHHHHccccccCeEEEEE
Q 022962 191 EQYDVAVARAV-----A-------------------EMRILAEYCLPLVRVGGLFVAA 224 (289)
Q Consensus 191 ~~fD~V~sn~~-----~-------------------~~~~ll~~~~~~LkpgG~l~~~ 224 (289)
+..|+++.|+- . ..-.+++.+.+.++++|.+++.
T Consensus 133 g~iD~lV~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~iv~~ 190 (300)
T PRK06128 133 GGLDILVNIAGKQTAVKDIADITTEQFDATFKTNVYAMFWLCKAAIPHLPPGASIINT 190 (300)
T ss_pred CCCCEEEECCcccCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHhcCcCCEEEEE
Confidence 36899998841 0 0124556677777888888765
No 434
>PTZ00075 Adenosylhomocysteinase; Provisional
Probab=78.44 E-value=14 Score=36.19 Aligned_cols=85 Identities=16% Similarity=0.075 Sum_probs=53.7
Q ss_pred CCCeEEEEcCCCChHHHHHHHHC--CCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCcCCCCceEEEE
Q 022962 121 SNLKLVDVGTGAGLPGLVLAIAC--PDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVA 198 (289)
Q Consensus 121 ~~~~VLDiGcG~G~~~l~la~~~--p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~~~~~fD~V~s 198 (289)
.+.+|+=+|+|. +|..+|+.. -+.+|+.+|.++.....+.. .|. ++. +++++. ...|+|++
T Consensus 253 aGKtVgVIG~G~--IGr~vA~rL~a~Ga~ViV~e~dp~~a~~A~~----~G~---~~~--~leell------~~ADIVI~ 315 (476)
T PTZ00075 253 AGKTVVVCGYGD--VGKGCAQALRGFGARVVVTEIDPICALQAAM----EGY---QVV--TLEDVV------ETADIFVT 315 (476)
T ss_pred CCCEEEEECCCH--HHHHHHHHHHHCCCEEEEEeCCchhHHHHHh----cCc---eec--cHHHHH------hcCCEEEE
Confidence 388999999985 666666542 35799999998765432222 232 221 333331 45899987
Q ss_pred cCcccHHHHH-HHHccccccCeEEEEE
Q 022962 199 RAVAEMRILA-EYCLPLVRVGGLFVAA 224 (289)
Q Consensus 199 n~~~~~~~ll-~~~~~~LkpgG~l~~~ 224 (289)
.. .. ..++ .+....+|||++++-.
T Consensus 316 at-Gt-~~iI~~e~~~~MKpGAiLINv 340 (476)
T PTZ00075 316 AT-GN-KDIITLEHMRRMKNNAIVGNI 340 (476)
T ss_pred CC-Cc-ccccCHHHHhccCCCcEEEEc
Confidence 63 22 2344 4677889999998754
No 435
>KOG1098 consensus Putative SAM-dependent rRNA methyltransferase SPB1 [RNA processing and modification; General function prediction only]
Probab=78.43 E-value=2.3 Score=42.45 Aligned_cols=92 Identities=13% Similarity=0.055 Sum_probs=58.3
Q ss_pred CCCCeEEEEcCCCChHHHHHHHHCC-CCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCc-----CCCCc
Q 022962 120 NSNLKLVDVGTGAGLPGLVLAIACP-DWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVS-----FREQY 193 (289)
Q Consensus 120 ~~~~~VLDiGcG~G~~~l~la~~~p-~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~-----~~~~f 193 (289)
.++..|||+||-+|.|.-..++..| +.-|+|||+-+-. -+.|+..++.||..-..... -.-+.
T Consensus 43 ~~a~~vlDLcaAPG~W~QVA~q~~pv~slivGvDl~pik-----------p~~~c~t~v~dIttd~cr~~l~k~l~t~~a 111 (780)
T KOG1098|consen 43 EKAHVVLDLCAAPGGWLQVASQSMPVGSLIVGVDLVPIK-----------PIPNCDTLVEDITTDECRSKLRKILKTWKA 111 (780)
T ss_pred cccchheeeccCCcHHHHHHHHhCCCCceEEEeeeeecc-----------cCCccchhhhhhhHHHHHHHHHHHHHhCCC
Confidence 4578999999999999888777776 4679999986521 23355445555543110000 01246
Q ss_pred eEEEEcCcc---------------cHHHHHHHHccccccCeEEE
Q 022962 194 DVAVARAVA---------------EMRILAEYCLPLVRVGGLFV 222 (289)
Q Consensus 194 D~V~sn~~~---------------~~~~ll~~~~~~LkpgG~l~ 222 (289)
|+|+...-. -.-..++-+..+|..||.|+
T Consensus 112 dvVLhDgapnVg~~w~~DA~~q~~L~l~al~LA~~~l~~~g~fv 155 (780)
T KOG1098|consen 112 DVVLHDGAPNVGGNWVQDAFQQACLTLRALKLATEFLAKGGTFV 155 (780)
T ss_pred cEEeecCCCccchhHHHHHHHhhHHHHHHHHHHHHHHHhcCccc
Confidence 888876311 01345567778899999976
No 436
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=78.38 E-value=11 Score=30.79 Aligned_cols=93 Identities=18% Similarity=0.204 Sum_probs=55.0
Q ss_pred EEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcC-C------CCEEEEeccccccCCCCcCCCCceEEE
Q 022962 125 LVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQ-L------LNVQIVRGRAETLGKDVSFREQYDVAV 197 (289)
Q Consensus 125 VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~-l------~ni~~~~~d~~~~~~~~~~~~~fD~V~ 197 (289)
|.=+|+|.+..++.......+.+|+....+++.++..++.-.... + .++.+ ..|+++.- +..|+|+
T Consensus 2 I~ViGaG~~G~AlA~~la~~g~~V~l~~~~~~~~~~i~~~~~n~~~~~~~~l~~~i~~-t~dl~~a~------~~ad~Ii 74 (157)
T PF01210_consen 2 IAVIGAGNWGTALAALLADNGHEVTLWGRDEEQIEEINETRQNPKYLPGIKLPENIKA-TTDLEEAL------EDADIII 74 (157)
T ss_dssp EEEESSSHHHHHHHHHHHHCTEEEEEETSCHHHHHHHHHHTSETTTSTTSBEETTEEE-ESSHHHHH------TT-SEEE
T ss_pred EEEECcCHHHHHHHHHHHHcCCEEEEEeccHHHHHHHHHhCCCCCCCCCcccCccccc-ccCHHHHh------CcccEEE
Confidence 344566555444432223345799999999988877776432111 1 24443 34554321 3468888
Q ss_pred Ec-CcccHHHHHHHHccccccCeEEEEE
Q 022962 198 AR-AVAEMRILAEYCLPLVRVGGLFVAA 224 (289)
Q Consensus 198 sn-~~~~~~~ll~~~~~~LkpgG~l~~~ 224 (289)
.. .....+.+++++...++++-.++..
T Consensus 75 iavPs~~~~~~~~~l~~~l~~~~~ii~~ 102 (157)
T PF01210_consen 75 IAVPSQAHREVLEQLAPYLKKGQIIISA 102 (157)
T ss_dssp E-S-GGGHHHHHHHHTTTSHTT-EEEET
T ss_pred ecccHHHHHHHHHHHhhccCCCCEEEEe
Confidence 55 4556789999999999887777653
No 437
>PRK05867 short chain dehydrogenase; Provisional
Probab=78.35 E-value=11 Score=32.67 Aligned_cols=77 Identities=17% Similarity=0.093 Sum_probs=52.0
Q ss_pred CCeEEEEcCCCChHHHHHHHHC--CCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCC-------cCCCC
Q 022962 122 NLKLVDVGTGAGLPGLVLAIAC--PDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDV-------SFREQ 192 (289)
Q Consensus 122 ~~~VLDiGcG~G~~~l~la~~~--p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~-------~~~~~ 192 (289)
+.++|=.|+++| +|..+++.+ .+.+|++++.+++.++...+..+..+ .++.++..|+.+...-. ..-++
T Consensus 9 ~k~vlVtGas~g-IG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~-~~~~~~~~D~~~~~~~~~~~~~~~~~~g~ 86 (253)
T PRK05867 9 GKRALITGASTG-IGKRVALAYVEAGAQVAIAARHLDALEKLADEIGTSG-GKVVPVCCDVSQHQQVTSMLDQVTAELGG 86 (253)
T ss_pred CCEEEEECCCch-HHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcC-CeEEEEEccCCCHHHHHHHHHHHHHHhCC
Confidence 678999998766 577777553 46799999999887766665555444 35778888886542100 00146
Q ss_pred ceEEEEcC
Q 022962 193 YDVAVARA 200 (289)
Q Consensus 193 fD~V~sn~ 200 (289)
.|.++.|+
T Consensus 87 id~lv~~a 94 (253)
T PRK05867 87 IDIAVCNA 94 (253)
T ss_pred CCEEEECC
Confidence 89999873
No 438
>PRK07814 short chain dehydrogenase; Provisional
Probab=78.35 E-value=13 Score=32.55 Aligned_cols=77 Identities=12% Similarity=0.083 Sum_probs=51.2
Q ss_pred CCeEEEEcCCCChHHHHHHHHC--CCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCc-C------CCC
Q 022962 122 NLKLVDVGTGAGLPGLVLAIAC--PDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVS-F------REQ 192 (289)
Q Consensus 122 ~~~VLDiGcG~G~~~l~la~~~--p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~-~------~~~ 192 (289)
+.++|=.|. +|.+|..+++.+ .+++|++++.+++.++.+.+..+..+ .++.++..|+.+...-.. + -+.
T Consensus 10 ~~~vlItGa-sggIG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~l~~~~-~~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 87 (263)
T PRK07814 10 DQVAVVTGA-GRGLGAAIALAFAEAGADVLIAARTESQLDEVAEQIRAAG-RRAHVVAADLAHPEATAGLAGQAVEAFGR 87 (263)
T ss_pred CCEEEEECC-CChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC-CcEEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence 678999995 566788877643 46899999999877665555444433 257888888876431100 0 136
Q ss_pred ceEEEEcC
Q 022962 193 YDVAVARA 200 (289)
Q Consensus 193 fD~V~sn~ 200 (289)
+|+|+.++
T Consensus 88 id~vi~~A 95 (263)
T PRK07814 88 LDIVVNNV 95 (263)
T ss_pred CCEEEECC
Confidence 89999874
No 439
>PRK06181 short chain dehydrogenase; Provisional
Probab=78.26 E-value=13 Score=32.44 Aligned_cols=76 Identities=14% Similarity=0.064 Sum_probs=48.4
Q ss_pred CeEEEEcCCCChHHHHHHHHC--CCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCc-C------CCCc
Q 022962 123 LKLVDVGTGAGLPGLVLAIAC--PDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVS-F------REQY 193 (289)
Q Consensus 123 ~~VLDiGcG~G~~~l~la~~~--p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~-~------~~~f 193 (289)
.+||=.|+ +|.+|..+++.+ .+.+|++++.++...+.+.+.....+. ++.++..|+.+...-.. + -+..
T Consensus 2 ~~vlVtGa-sg~iG~~la~~l~~~g~~Vi~~~r~~~~~~~~~~~l~~~~~-~~~~~~~Dl~~~~~~~~~~~~~~~~~~~i 79 (263)
T PRK06181 2 KVVIITGA-SEGIGRALAVRLARAGAQLVLAARNETRLASLAQELADHGG-EALVVPTDVSDAEACERLIEAAVARFGGI 79 (263)
T ss_pred CEEEEecC-CcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCC-cEEEEEccCCCHHHHHHHHHHHHHHcCCC
Confidence 36777775 455787776543 467999999998776655554444442 58888888876421000 0 0357
Q ss_pred eEEEEcC
Q 022962 194 DVAVARA 200 (289)
Q Consensus 194 D~V~sn~ 200 (289)
|.|+.++
T Consensus 80 d~vi~~a 86 (263)
T PRK06181 80 DILVNNA 86 (263)
T ss_pred CEEEECC
Confidence 9999874
No 440
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=78.21 E-value=24 Score=29.49 Aligned_cols=99 Identities=13% Similarity=0.117 Sum_probs=59.1
Q ss_pred EEEEcCCCChHHHHHHH--HCCCCEEEEEeCChHHHHHHHHHHHH-------cC----------CCCEEEEeccccccCC
Q 022962 125 LVDVGTGAGLPGLVLAI--ACPDWKVTLLESMNKRCVFLEHAVSL-------TQ----------LLNVQIVRGRAETLGK 185 (289)
Q Consensus 125 VLDiGcG~G~~~l~la~--~~p~~~V~~iD~s~~~l~~a~~~~~~-------~~----------l~ni~~~~~d~~~~~~ 185 (289)
|.=||+| ..|..+|. ...+.+|+.+|.+++.++.+++.++. .+ +.++++ ..|++++.
T Consensus 2 V~ViGaG--~mG~~iA~~~a~~G~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~-~~dl~~~~- 77 (180)
T PF02737_consen 2 VAVIGAG--TMGRGIAALFARAGYEVTLYDRSPEALERARKRIERLLDRLVRKGRLSQEEADAALARISF-TTDLEEAV- 77 (180)
T ss_dssp EEEES-S--HHHHHHHHHHHHTTSEEEEE-SSHHHHHHHHHHHHHHHHHHHHTTTTTHHHHHHHHHTEEE-ESSGGGGC-
T ss_pred EEEEcCC--HHHHHHHHHHHhCCCcEEEEECChHHHHhhhhHHHHHHhhhhhhccchhhhhhhhhhhccc-ccCHHHHh-
Confidence 3445664 55544443 23478999999999999888876554 11 234653 45555542
Q ss_pred CCcCCCCceEEEEcCccc---HHHHHHHHccccccCeEEEEEEcCCcHHHH
Q 022962 186 DVSFREQYDVAVARAVAE---MRILAEYCLPLVRVGGLFVAAKGHDPQEEV 233 (289)
Q Consensus 186 ~~~~~~~fD~V~sn~~~~---~~~ll~~~~~~LkpgG~l~~~~g~~~~~ei 233 (289)
..|+|+=....+ -..+++++.+.+.|+-.|.--...-...++
T Consensus 78 ------~adlViEai~E~l~~K~~~~~~l~~~~~~~~ilasnTSsl~i~~l 122 (180)
T PF02737_consen 78 ------DADLVIEAIPEDLELKQELFAELDEICPPDTILASNTSSLSISEL 122 (180)
T ss_dssp ------TESEEEE-S-SSHHHHHHHHHHHHCCS-TTSEEEE--SSS-HHHH
T ss_pred ------hhheehhhccccHHHHHHHHHHHHHHhCCCceEEecCCCCCHHHH
Confidence 579999665444 378999999999999887754443334343
No 441
>PLN02586 probable cinnamyl alcohol dehydrogenase
Probab=78.15 E-value=12 Score=34.89 Aligned_cols=93 Identities=17% Similarity=0.166 Sum_probs=50.6
Q ss_pred CCCeEEEEcCCC-ChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEe-ccccccCCCCcCCCCceEEEE
Q 022962 121 SNLKLVDVGTGA-GLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVR-GRAETLGKDVSFREQYDVAVA 198 (289)
Q Consensus 121 ~~~~VLDiGcG~-G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~-~d~~~~~~~~~~~~~fD~V~s 198 (289)
++.+||=.|+|+ |..++.+|+.. +.+|++++.++.... +.++++|.+. ++. .+...+... .+.+|+|+-
T Consensus 183 ~g~~VlV~G~G~vG~~avq~Ak~~-Ga~vi~~~~~~~~~~---~~~~~~Ga~~--vi~~~~~~~~~~~---~~~~D~vid 253 (360)
T PLN02586 183 PGKHLGVAGLGGLGHVAVKIGKAF-GLKVTVISSSSNKED---EAINRLGADS--FLVSTDPEKMKAA---IGTMDYIID 253 (360)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHC-CCEEEEEeCCcchhh---hHHHhCCCcE--EEcCCCHHHHHhh---cCCCCEEEE
Confidence 477888887741 22334455554 568889888765422 2234456532 121 111111111 125899884
Q ss_pred cCcccHHHHHHHHccccccCeEEEEE
Q 022962 199 RAVAEMRILAEYCLPLVRVGGLFVAA 224 (289)
Q Consensus 199 n~~~~~~~ll~~~~~~LkpgG~l~~~ 224 (289)
.. .. ...++.+.+.|++||+++..
T Consensus 254 ~~-g~-~~~~~~~~~~l~~~G~iv~v 277 (360)
T PLN02586 254 TV-SA-VHALGPLLGLLKVNGKLITL 277 (360)
T ss_pred CC-CC-HHHHHHHHHHhcCCcEEEEe
Confidence 32 22 23456677889999998854
No 442
>PRK07576 short chain dehydrogenase; Provisional
Probab=78.09 E-value=14 Score=32.56 Aligned_cols=77 Identities=16% Similarity=0.002 Sum_probs=49.0
Q ss_pred CCeEEEEcCCCChHHHHHHHHC--CCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCc-------CCCC
Q 022962 122 NLKLVDVGTGAGLPGLVLAIAC--PDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVS-------FREQ 192 (289)
Q Consensus 122 ~~~VLDiGcG~G~~~l~la~~~--p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~-------~~~~ 192 (289)
+.++|=.|. +|.+|..+++.+ .+++|+++|.+++.+..........+. ++.++..|+.+...-.. ....
T Consensus 9 ~k~ilItGa-sggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~Dv~~~~~i~~~~~~~~~~~~~ 86 (264)
T PRK07576 9 GKNVVVVGG-TSGINLGIAQAFARAGANVAVASRSQEKVDAAVAQLQQAGP-EGLGVSADVRDYAAVEAAFAQIADEFGP 86 (264)
T ss_pred CCEEEEECC-CchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhCC-ceEEEECCCCCHHHHHHHHHHHHHHcCC
Confidence 678998885 556777777543 467999999988766554444443332 46778888865321000 0135
Q ss_pred ceEEEEcC
Q 022962 193 YDVAVARA 200 (289)
Q Consensus 193 fD~V~sn~ 200 (289)
.|.++.++
T Consensus 87 iD~vi~~a 94 (264)
T PRK07576 87 IDVLVSGA 94 (264)
T ss_pred CCEEEECC
Confidence 79999774
No 443
>PRK10310 PTS system galactitol-specific transporter subunit IIB; Provisional
Probab=78.01 E-value=5.9 Score=29.62 Aligned_cols=52 Identities=12% Similarity=0.210 Sum_probs=31.8
Q ss_pred EcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCcCCCCceEEEEcC
Q 022962 128 VGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARA 200 (289)
Q Consensus 128 iGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~~~~~fD~V~sn~ 200 (289)
+-||+|.-+-.++.. ..++..++.|+ ++++.+.++.++... ...+|+|++..
T Consensus 7 vvCgsG~~TS~m~~~-----------------ki~~~l~~~gi-~~~v~~~~~~e~~~~---~~~~D~iv~t~ 58 (94)
T PRK10310 7 VACGGAVATSTMAAE-----------------EIKELCQSHNI-PVELIQCRVNEIETY---MDGVHLICTTA 58 (94)
T ss_pred EECCCchhHHHHHHH-----------------HHHHHHHHCCC-eEEEEEecHHHHhhh---cCCCCEEEECC
Confidence 578999855444311 24556666776 477777777665431 14578888764
No 444
>PRK05854 short chain dehydrogenase; Provisional
Probab=77.94 E-value=6.4 Score=35.85 Aligned_cols=78 Identities=15% Similarity=0.061 Sum_probs=51.9
Q ss_pred CCeEEEEcCCCChHHHHHHHHC--CCCEEEEEeCChHHHHHHHHHHHHc-CCCCEEEEeccccccCCCC-------cCCC
Q 022962 122 NLKLVDVGTGAGLPGLVLAIAC--PDWKVTLLESMNKRCVFLEHAVSLT-QLLNVQIVRGRAETLGKDV-------SFRE 191 (289)
Q Consensus 122 ~~~VLDiGcG~G~~~l~la~~~--p~~~V~~iD~s~~~l~~a~~~~~~~-~l~ni~~~~~d~~~~~~~~-------~~~~ 191 (289)
+.+++=.|+++| +|..+|+.+ .+.+|+.++.+.+..+.+.+.+... +-.++.++..|+.+...-. ...+
T Consensus 14 gk~~lITGas~G-IG~~~a~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dl~d~~sv~~~~~~~~~~~~ 92 (313)
T PRK05854 14 GKRAVVTGASDG-LGLGLARRLAAAGAEVILPVRNRAKGEAAVAAIRTAVPDAKLSLRALDLSSLASVAALGEQLRAEGR 92 (313)
T ss_pred CCEEEEeCCCCh-HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhCCCCceEEEEecCCCHHHHHHHHHHHHHhCC
Confidence 678888888766 577777653 4689999999987766555544332 2235888888987653210 0114
Q ss_pred CceEEEEcC
Q 022962 192 QYDVAVARA 200 (289)
Q Consensus 192 ~fD~V~sn~ 200 (289)
..|+++.|+
T Consensus 93 ~iD~li~nA 101 (313)
T PRK05854 93 PIHLLINNA 101 (313)
T ss_pred CccEEEECC
Confidence 689999884
No 445
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=77.74 E-value=9.8 Score=38.30 Aligned_cols=92 Identities=15% Similarity=0.061 Sum_probs=55.8
Q ss_pred CeEEEEcCCCChHHHHHHHHC--CCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCC-cCCCCceEEEEc
Q 022962 123 LKLVDVGTGAGLPGLVLAIAC--PDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDV-SFREQYDVAVAR 199 (289)
Q Consensus 123 ~~VLDiGcG~G~~~l~la~~~--p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~-~~~~~fD~V~sn 199 (289)
.+|+= ||.|..|..+++.. .+.+++.+|.|++.++.+++ . ...++.+|+.+...-. ..-++.|++++.
T Consensus 401 ~~vII--~G~Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~----~---g~~v~~GDat~~~~L~~agi~~A~~vv~~ 471 (601)
T PRK03659 401 PQVII--VGFGRFGQVIGRLLMANKMRITVLERDISAVNLMRK----Y---GYKVYYGDATQLELLRAAGAEKAEAIVIT 471 (601)
T ss_pred CCEEE--ecCchHHHHHHHHHHhCCCCEEEEECCHHHHHHHHh----C---CCeEEEeeCCCHHHHHhcCCccCCEEEEE
Confidence 34544 55667888887653 45799999999998877654 2 3567889988742110 011467888865
Q ss_pred Cccc-HH-HHHHHHccccccCeEEEEE
Q 022962 200 AVAE-MR-ILAEYCLPLVRVGGLFVAA 224 (289)
Q Consensus 200 ~~~~-~~-~ll~~~~~~LkpgG~l~~~ 224 (289)
.-.+ -. .+... .+.+.|+..++.-
T Consensus 472 ~~d~~~n~~i~~~-~r~~~p~~~IiaR 497 (601)
T PRK03659 472 CNEPEDTMKIVEL-CQQHFPHLHILAR 497 (601)
T ss_pred eCCHHHHHHHHHH-HHHHCCCCeEEEE
Confidence 3221 12 22233 3446677777654
No 446
>COG4121 Uncharacterized conserved protein [Function unknown]
Probab=77.68 E-value=12 Score=33.36 Aligned_cols=136 Identities=15% Similarity=0.049 Sum_probs=84.9
Q ss_pred CCeEEEEcCCCChHHHHHHHHCCC------------CEEEEEeCChHHHHHHH-------------HH------------
Q 022962 122 NLKLVDVGTGAGLPGLVLAIACPD------------WKVTLLESMNKRCVFLE-------------HA------------ 164 (289)
Q Consensus 122 ~~~VLDiGcG~G~~~l~la~~~p~------------~~V~~iD~s~~~l~~a~-------------~~------------ 164 (289)
...|+++|-|+|...+.+-+..+. .++++++.++-.-..+. ..
T Consensus 59 ~~~i~E~gfgtglnfl~~~~~~~~~~~~~~~~~~~~l~~~S~e~~P~~~~~l~~l~~~pel~~~~~~l~~~~~~~~~~~~ 138 (252)
T COG4121 59 ILQILEIGFGTGLNFLTAHLAIGDARQAKLEVVLLDLKFDSIELDPFSPPKCPALWTVPFLCHLADALAPTGPLATYGCA 138 (252)
T ss_pred ceeehhhhcccchhHHHHHhhhhhhhhccccccccccceEEEEeCCCChhhhHHHhhhhhHHHHHHHHhhccCcccchhH
Confidence 457999999999988776554332 35778877653222111 10
Q ss_pred -HHHcCCCCEEEEeccccccCCCCcCCC---CceEEEEcCcc---c----HHHHHHHHccccccCeEEEEEEcCCcHHHH
Q 022962 165 -VSLTQLLNVQIVRGRAETLGKDVSFRE---QYDVAVARAVA---E----MRILAEYCLPLVRVGGLFVAAKGHDPQEEV 233 (289)
Q Consensus 165 -~~~~~l~ni~~~~~d~~~~~~~~~~~~---~fD~V~sn~~~---~----~~~ll~~~~~~LkpgG~l~~~~g~~~~~ei 233 (289)
+...|..+..++.+|+.+.-.. .+. .+|+.+-.+++ + -.+++..+++..++||.+.-.. ..
T Consensus 139 r~~~~g~~~l~l~~gd~~~~~p~--~~~~~~~~dAwflDgFsP~kNP~mW~~e~l~~~a~~~~~~~~l~t~s------sA 210 (252)
T COG4121 139 AAVRHGLLLLGLVIGDAGDGIPP--VPRRRPGTDAWFLDGFRPVKNPEMWEDELLNLMARIPYRDPTLATFA------AA 210 (252)
T ss_pred HhhhcchheeeeeeeehhhcCCc--ccccccCccEEecCCccccCChhhccHHHHHHHHhhcCCCCceechH------HH
Confidence 1111333567788888764332 123 68999987543 2 2688999999999999987432 12
Q ss_pred HHHHHHHHHhCCeEeEEeeeecCCCCCceEEEEEEec
Q 022962 234 KNSERAVQLMGASLLQLCSVESQSPFGQRTAVVCLKS 270 (289)
Q Consensus 234 ~~~~~~l~~~g~~~~~~~~~~~~~~~~~r~lv~~~k~ 270 (289)
.-..+.+..+||.+.+.. .....|.+....+.
T Consensus 211 ~~vRr~L~~aGF~v~~r~-----g~grKRem~~a~~~ 242 (252)
T COG4121 211 IAVRRRLEQAGFTVEKRT-----GRGKKRELLRGVKI 242 (252)
T ss_pred HHHHHHHHHcCceeeecC-----Cccccccchhhhcc
Confidence 234557789999877653 33455666665554
No 447
>PRK06914 short chain dehydrogenase; Provisional
Probab=77.66 E-value=14 Score=32.62 Aligned_cols=78 Identities=13% Similarity=0.043 Sum_probs=50.4
Q ss_pred CCeEEEEcCCCChHHHHHHHHC--CCCEEEEEeCChHHHHHHHHHHHHcCC-CCEEEEeccccccCCCC------cCCCC
Q 022962 122 NLKLVDVGTGAGLPGLVLAIAC--PDWKVTLLESMNKRCVFLEHAVSLTQL-LNVQIVRGRAETLGKDV------SFREQ 192 (289)
Q Consensus 122 ~~~VLDiGcG~G~~~l~la~~~--p~~~V~~iD~s~~~l~~a~~~~~~~~l-~ni~~~~~d~~~~~~~~------~~~~~ 192 (289)
+.++|=.|+++ .+|..+++.+ .+.+|++++.+++.++...+.....+. .++.++.+|+.+...-. ..-++
T Consensus 3 ~k~~lItGasg-~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~~~~~~ 81 (280)
T PRK06914 3 KKIAIVTGASS-GFGLLTTLELAKKGYLVIATMRNPEKQENLLSQATQLNLQQNIKVQQLDVTDQNSIHNFQLVLKEIGR 81 (280)
T ss_pred CCEEEEECCCc-hHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcCCCCceeEEecCCCCHHHHHHHHHHHHhcCC
Confidence 45788888654 4577776542 467999999988777666555554443 35888888887643110 00135
Q ss_pred ceEEEEcC
Q 022962 193 YDVAVARA 200 (289)
Q Consensus 193 fD~V~sn~ 200 (289)
.|.|+.++
T Consensus 82 id~vv~~a 89 (280)
T PRK06914 82 IDLLVNNA 89 (280)
T ss_pred eeEEEECC
Confidence 79998873
No 448
>PRK05565 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=77.54 E-value=7.9 Score=33.15 Aligned_cols=77 Identities=14% Similarity=0.062 Sum_probs=50.2
Q ss_pred CCeEEEEcCCCChHHHHHHHHC--CCCEEEEE-eCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCc-C------CC
Q 022962 122 NLKLVDVGTGAGLPGLVLAIAC--PDWKVTLL-ESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVS-F------RE 191 (289)
Q Consensus 122 ~~~VLDiGcG~G~~~l~la~~~--p~~~V~~i-D~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~-~------~~ 191 (289)
+.++|=.|+ +|.+|..+++.+ .+.+|+.+ +.++...+.........+ .++.++..|+.+...-.. . -+
T Consensus 5 ~~~ilI~Ga-sg~iG~~la~~l~~~g~~v~~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 82 (247)
T PRK05565 5 GKVAIVTGA-SGGIGRAIAELLAKEGAKVVIAYDINEEAAQELLEEIKEEG-GDAIAVKADVSSEEDVENLVEQIVEKFG 82 (247)
T ss_pred CCEEEEeCC-CcHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcC-CeEEEEECCCCCHHHHHHHHHHHHHHhC
Confidence 457887775 677888887653 46789998 988877655555444433 258888899876431100 0 02
Q ss_pred CceEEEEcC
Q 022962 192 QYDVAVARA 200 (289)
Q Consensus 192 ~fD~V~sn~ 200 (289)
.+|+|+.++
T Consensus 83 ~id~vi~~a 91 (247)
T PRK05565 83 KIDILVNNA 91 (247)
T ss_pred CCCEEEECC
Confidence 689999874
No 449
>cd05564 PTS_IIB_chitobiose_lichenan PTS_IIB_chitobiose_lichenan: subunit IIB of enzyme II (EII) of the N,N-diacetylchitobiose-specific and lichenan-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In these systems, EII is either a lichenan- or an N,N-diacetylchitobiose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. In the chitobiose system, these subunits are expressed as separate proteins from chbA, chbB, and chbC of the chb operon (formerly the cel (cellulose) operon). In the lichenan system, these subunits are expressed from licA, licB, and licC of the lic operon. The lic operon of Bacillus subtilis is required for the transport and degradation of oligomeric beta-glucosides, which are produced by extracellular enzymes on substrates such as lichenan or barley glucan. The lic operon is transcribed from a gammaA-dependent promoter and is inducible by lichenan, lichenan hydrolysate, and cellobiose. The IIB d
Probab=77.34 E-value=5.2 Score=29.99 Aligned_cols=51 Identities=16% Similarity=0.173 Sum_probs=35.5
Q ss_pred EcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCcCCCCceEEEEcC
Q 022962 128 VGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARA 200 (289)
Q Consensus 128 iGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~~~~~fD~V~sn~ 200 (289)
+.||+|.-+-.++. .+++.+++.|+ ++++.+.++.++... ...||+|+..+
T Consensus 4 ~~Cg~G~sTS~~~~------------------ki~~~~~~~~~-~~~v~~~~~~~~~~~---~~~~Diil~~P 54 (96)
T cd05564 4 LVCSAGMSTSILVK------------------KMKKAAEKRGI-DAEIEAVPESELEEY---IDDADVVLLGP 54 (96)
T ss_pred EEcCCCchHHHHHH------------------HHHHHHHHCCC-ceEEEEecHHHHHHh---cCCCCEEEECh
Confidence 57999975554443 35677788887 488888888776432 25699999874
No 450
>PRK07677 short chain dehydrogenase; Provisional
Probab=77.28 E-value=13 Score=32.20 Aligned_cols=76 Identities=12% Similarity=0.024 Sum_probs=49.0
Q ss_pred CeEEEEcCCCChHHHHHHHHC--CCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCc-------CCCCc
Q 022962 123 LKLVDVGTGAGLPGLVLAIAC--PDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVS-------FREQY 193 (289)
Q Consensus 123 ~~VLDiGcG~G~~~l~la~~~--p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~-------~~~~f 193 (289)
.++|=.|++.| +|..+++.+ .+.+|++++.++..++.+.+..+..+ .++.++..|+.+...-.. .-+..
T Consensus 2 k~~lItG~s~g-iG~~ia~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~~~-~~~~~~~~D~~~~~~~~~~~~~~~~~~~~i 79 (252)
T PRK07677 2 KVVIITGGSSG-MGKAMAKRFAEEGANVVITGRTKEKLEEAKLEIEQFP-GQVLTVQMDVRNPEDVQKMVEQIDEKFGRI 79 (252)
T ss_pred CEEEEeCCCCh-HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC-CcEEEEEecCCCHHHHHHHHHHHHHHhCCc
Confidence 46888888766 577666543 46799999999877666555444433 368888888765321000 01357
Q ss_pred eEEEEcC
Q 022962 194 DVAVARA 200 (289)
Q Consensus 194 D~V~sn~ 200 (289)
|.++.++
T Consensus 80 d~lI~~a 86 (252)
T PRK07677 80 DALINNA 86 (252)
T ss_pred cEEEECC
Confidence 9999873
No 451
>PRK08267 short chain dehydrogenase; Provisional
Probab=77.26 E-value=7.8 Score=33.78 Aligned_cols=73 Identities=14% Similarity=0.044 Sum_probs=47.7
Q ss_pred eEEEEcCCCChHHHHHHHHC--CCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCC--------cCCCCc
Q 022962 124 KLVDVGTGAGLPGLVLAIAC--PDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDV--------SFREQY 193 (289)
Q Consensus 124 ~VLDiGcG~G~~~l~la~~~--p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~--------~~~~~f 193 (289)
++|=.|+++ .+|..+++.+ .+.+|++++.+.+.++.+.+... -.++.++++|+.+...-. ...+++
T Consensus 3 ~vlItGasg-~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~---~~~~~~~~~D~~~~~~v~~~~~~~~~~~~~~i 78 (260)
T PRK08267 3 SIFITGAAS-GIGRATALLFAAEGWRVGAYDINEAGLAALAAELG---AGNAWTGALDVTDRAAWDAALADFAAATGGRL 78 (260)
T ss_pred EEEEeCCCc-hHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhc---CCceEEEEecCCCHHHHHHHHHHHHHHcCCCC
Confidence 578888764 5677777643 46799999999876655544322 236888899987643110 002468
Q ss_pred eEEEEcC
Q 022962 194 DVAVARA 200 (289)
Q Consensus 194 D~V~sn~ 200 (289)
|.|+.++
T Consensus 79 d~vi~~a 85 (260)
T PRK08267 79 DVLFNNA 85 (260)
T ss_pred CEEEECC
Confidence 9999884
No 452
>KOG1201 consensus Hydroxysteroid 17-beta dehydrogenase 11 [Secondary metabolites biosynthesis, transport and catabolism]
Probab=77.06 E-value=11 Score=34.43 Aligned_cols=76 Identities=14% Similarity=0.095 Sum_probs=56.2
Q ss_pred CCeEEEEcCCCChHHHHHHHHC--CCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCC-------CcCCCC
Q 022962 122 NLKLVDVGTGAGLPGLVLAIAC--PDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKD-------VSFREQ 192 (289)
Q Consensus 122 ~~~VLDiGcG~G~~~l~la~~~--p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~-------~~~~~~ 192 (289)
|+.||==|.|+|. |..+|.++ -++++..+|++.+......+.++..| ++.....|+.+...- ...-+.
T Consensus 38 g~~vLITGgg~Gl-Gr~ialefa~rg~~~vl~Din~~~~~etv~~~~~~g--~~~~y~cdis~~eei~~~a~~Vk~e~G~ 114 (300)
T KOG1201|consen 38 GEIVLITGGGSGL-GRLIALEFAKRGAKLVLWDINKQGNEETVKEIRKIG--EAKAYTCDISDREEIYRLAKKVKKEVGD 114 (300)
T ss_pred CCEEEEeCCCchH-HHHHHHHHHHhCCeEEEEeccccchHHHHHHHHhcC--ceeEEEecCCCHHHHHHHHHHHHHhcCC
Confidence 7899999999995 66665543 25689999999998888888888776 688888888764310 001257
Q ss_pred ceEEEEcC
Q 022962 193 YDVAVARA 200 (289)
Q Consensus 193 fD~V~sn~ 200 (289)
.|+++.||
T Consensus 115 V~ILVNNA 122 (300)
T KOG1201|consen 115 VDILVNNA 122 (300)
T ss_pred ceEEEecc
Confidence 99999994
No 453
>cd08233 butanediol_DH_like (2R,3R)-2,3-butanediol dehydrogenase. (2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit.
Probab=77.04 E-value=10 Score=34.76 Aligned_cols=95 Identities=18% Similarity=0.084 Sum_probs=53.6
Q ss_pred CCCeEEEEcCCCChHHHH---HHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCE-EEEeccccc-cCCCCcCCCCceE
Q 022962 121 SNLKLVDVGTGAGLPGLV---LAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNV-QIVRGRAET-LGKDVSFREQYDV 195 (289)
Q Consensus 121 ~~~~VLDiGcG~G~~~l~---la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni-~~~~~d~~~-~~~~~~~~~~fD~ 195 (289)
++.+||=.|+ |.++.. +|+.....+|++++.+++..+.+++ +|.+.+ .....++.+ +... ...+.+|+
T Consensus 172 ~g~~vlI~g~--g~vG~~a~q~a~~~G~~~v~~~~~~~~~~~~~~~----~ga~~~i~~~~~~~~~~l~~~-~~~~~~d~ 244 (351)
T cd08233 172 PGDTALVLGA--GPIGLLTILALKAAGASKIIVSEPSEARRELAEE----LGATIVLDPTEVDVVAEVRKL-TGGGGVDV 244 (351)
T ss_pred CCCEEEEECC--CHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHH----hCCCEEECCCccCHHHHHHHH-hCCCCCCE
Confidence 4678887775 344444 4555433389999999988776643 454321 111111111 1000 01235999
Q ss_pred EEEcCcccHHHHHHHHccccccCeEEEEE
Q 022962 196 AVARAVAEMRILAEYCLPLVRVGGLFVAA 224 (289)
Q Consensus 196 V~sn~~~~~~~ll~~~~~~LkpgG~l~~~ 224 (289)
|+-..-. ...++.+.+.|+++|.++..
T Consensus 245 vid~~g~--~~~~~~~~~~l~~~G~~v~~ 271 (351)
T cd08233 245 SFDCAGV--QATLDTAIDALRPRGTAVNV 271 (351)
T ss_pred EEECCCC--HHHHHHHHHhccCCCEEEEE
Confidence 9965421 23556667789999998764
No 454
>PRK07453 protochlorophyllide oxidoreductase; Validated
Probab=76.93 E-value=6.2 Score=35.91 Aligned_cols=77 Identities=17% Similarity=0.155 Sum_probs=49.1
Q ss_pred CCeEEEEcCCCChHHHHHHHHC--CCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCC-------cCCCC
Q 022962 122 NLKLVDVGTGAGLPGLVLAIAC--PDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDV-------SFREQ 192 (289)
Q Consensus 122 ~~~VLDiGcG~G~~~l~la~~~--p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~-------~~~~~ 192 (289)
+.+||=.|+. |.+|..+++.+ .+.+|++++.+....+.+.+.....+ .++.++..|+.+...-. .....
T Consensus 6 ~k~vlVTGas-~gIG~~~a~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~~-~~~~~~~~Dl~~~~~v~~~~~~~~~~~~~ 83 (322)
T PRK07453 6 KGTVIITGAS-SGVGLYAAKALAKRGWHVIMACRNLKKAEAAAQELGIPP-DSYTIIHIDLGDLDSVRRFVDDFRALGKP 83 (322)
T ss_pred CCEEEEEcCC-ChHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhhccC-CceEEEEecCCCHHHHHHHHHHHHHhCCC
Confidence 5688888865 45677777653 46799999998876554444332211 25888888887643110 01135
Q ss_pred ceEEEEcC
Q 022962 193 YDVAVARA 200 (289)
Q Consensus 193 fD~V~sn~ 200 (289)
.|+++.|+
T Consensus 84 iD~li~nA 91 (322)
T PRK07453 84 LDALVCNA 91 (322)
T ss_pred ccEEEECC
Confidence 89999884
No 455
>cd08267 MDR1 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=76.91 E-value=24 Score=31.30 Aligned_cols=95 Identities=19% Similarity=0.140 Sum_probs=51.4
Q ss_pred CCCeEEEEcCC--CChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCcCCCCceEEEE
Q 022962 121 SNLKLVDVGTG--AGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVA 198 (289)
Q Consensus 121 ~~~~VLDiGcG--~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~~~~~fD~V~s 198 (289)
++.+|+-.|+. .|...+.+|+.. +.+|++++.+ ...+.+ +.++...+ +..+-.+........+.+|+|+.
T Consensus 143 ~g~~vli~g~~g~~g~~~~~la~~~-g~~v~~~~~~-~~~~~~----~~~g~~~~--~~~~~~~~~~~~~~~~~~d~vi~ 214 (319)
T cd08267 143 PGQRVLINGASGGVGTFAVQIAKAL-GAHVTGVCST-RNAELV----RSLGADEV--IDYTTEDFVALTAGGEKYDVIFD 214 (319)
T ss_pred CCCEEEEEcCCcHHHHHHHHHHHHc-CCEEEEEeCH-HHHHHH----HHcCCCEe--ecCCCCCcchhccCCCCCcEEEE
Confidence 47899999973 455555566654 5689998854 444433 44555321 11111111000011356999997
Q ss_pred cCcccHHHHHHHHccccccCeEEEEE
Q 022962 199 RAVAEMRILAEYCLPLVRVGGLFVAA 224 (289)
Q Consensus 199 n~~~~~~~ll~~~~~~LkpgG~l~~~ 224 (289)
..-.........+. .++++|+++..
T Consensus 215 ~~~~~~~~~~~~~~-~l~~~g~~i~~ 239 (319)
T cd08267 215 AVGNSPFSLYRASL-ALKPGGRYVSV 239 (319)
T ss_pred CCCchHHHHHHhhh-ccCCCCEEEEe
Confidence 54322233333333 39999998854
No 456
>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=76.80 E-value=16 Score=31.34 Aligned_cols=77 Identities=12% Similarity=-0.040 Sum_probs=50.4
Q ss_pred CCeEEEEcCCCChHHHHHHHHC--CCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCC-------CcCCCC
Q 022962 122 NLKLVDVGTGAGLPGLVLAIAC--PDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKD-------VSFREQ 192 (289)
Q Consensus 122 ~~~VLDiGcG~G~~~l~la~~~--p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~-------~~~~~~ 192 (289)
+.++|=.|++ |.+|..+++.+ .+.+|+.+|.++..++.+.+.++..+. ++.+++.|+.+.... ....+.
T Consensus 5 ~~~~lItG~~-g~iG~~~a~~l~~~G~~vi~~~r~~~~~~~~~~~~~~~~~-~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 82 (253)
T PRK08217 5 DKVIVITGGA-QGLGRAMAEYLAQKGAKLALIDLNQEKLEEAVAECGALGT-EVRGYAANVTDEEDVEATFAQIAEDFGQ 82 (253)
T ss_pred CCEEEEECCC-chHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCC-ceEEEEcCCCCHHHHHHHHHHHHHHcCC
Confidence 6789988874 55677777643 357899999998776666555555443 577888887653210 000135
Q ss_pred ceEEEEcC
Q 022962 193 YDVAVARA 200 (289)
Q Consensus 193 fD~V~sn~ 200 (289)
.|.|+.++
T Consensus 83 id~vi~~a 90 (253)
T PRK08217 83 LNGLINNA 90 (253)
T ss_pred CCEEEECC
Confidence 79999874
No 457
>PRK06196 oxidoreductase; Provisional
Probab=76.53 E-value=7.4 Score=35.32 Aligned_cols=73 Identities=14% Similarity=-0.012 Sum_probs=47.7
Q ss_pred CCeEEEEcCCCChHHHHHHHHC--CCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCC-------cCCCC
Q 022962 122 NLKLVDVGTGAGLPGLVLAIAC--PDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDV-------SFREQ 192 (289)
Q Consensus 122 ~~~VLDiGcG~G~~~l~la~~~--p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~-------~~~~~ 192 (289)
+.+||=.|++ |.+|..+++.+ .+.+|++++.+++..+.+.... .++.++.+|+.+...-. ...+.
T Consensus 26 ~k~vlITGas-ggIG~~~a~~L~~~G~~Vv~~~R~~~~~~~~~~~l-----~~v~~~~~Dl~d~~~v~~~~~~~~~~~~~ 99 (315)
T PRK06196 26 GKTAIVTGGY-SGLGLETTRALAQAGAHVIVPARRPDVAREALAGI-----DGVEVVMLDLADLESVRAFAERFLDSGRR 99 (315)
T ss_pred CCEEEEeCCC-chHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh-----hhCeEEEccCCCHHHHHHHHHHHHhcCCC
Confidence 5688988965 55788877653 4679999999887654433322 24677888887653110 00146
Q ss_pred ceEEEEcC
Q 022962 193 YDVAVARA 200 (289)
Q Consensus 193 fD~V~sn~ 200 (289)
.|+++.|+
T Consensus 100 iD~li~nA 107 (315)
T PRK06196 100 IDILINNA 107 (315)
T ss_pred CCEEEECC
Confidence 89999884
No 458
>PF03269 DUF268: Caenorhabditis protein of unknown function, DUF268; InterPro: IPR004951 This family consists of proteins of unknown function found in Caenorhabditis species.
Probab=76.20 E-value=1.5 Score=36.47 Aligned_cols=120 Identities=13% Similarity=0.077 Sum_probs=63.4
Q ss_pred CCeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEE-EEeccccc-cCCCCcCCCCceEEEEc
Q 022962 122 NLKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQ-IVRGRAET-LGKDVSFREQYDVAVAR 199 (289)
Q Consensus 122 ~~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~-~~~~d~~~-~~~~~~~~~~fD~V~sn 199 (289)
+++.+=+|+..=. --.+|.++.+.+|.-||-++-- .-.+.. ++++ +...|... +. .+.++||++.|.
T Consensus 2 ~~~g~V~GS~~Pw-vEv~aL~~GA~~iltveyn~L~--i~~~~~-----dr~ssi~p~df~~~~~---~y~~~fD~~as~ 70 (177)
T PF03269_consen 2 GKSGLVVGSMQPW-VEVMALQHGAAKILTVEYNKLE--IQEEFR-----DRLSSILPVDFAKNWQ---KYAGSFDFAASF 70 (177)
T ss_pred CceEEEEecCCch-hhHHHHHcCCceEEEEeecccc--cCcccc-----cccccccHHHHHHHHH---Hhhccchhhhee
Confidence 5677778877432 2345667778899999976411 111100 0111 11111110 10 124689998876
Q ss_pred C----------------cccHHHHHHHHccccccCeEEEEEEcCCc------HHHHHHHH-HHHHHhCCeEeEEeee
Q 022962 200 A----------------VAEMRILAEYCLPLVRVGGLFVAAKGHDP------QEEVKNSE-RAVQLMGASLLQLCSV 253 (289)
Q Consensus 200 ~----------------~~~~~~ll~~~~~~LkpgG~l~~~~g~~~------~~ei~~~~-~~l~~~g~~~~~~~~~ 253 (289)
. ..+ ...+.++.++||+||.|++..+... .+.+-... =.+--.||+++..-..
T Consensus 71 ~siEh~GLGRYGDPidp~Gd-l~~m~~i~~vLK~GG~L~l~vPvG~d~i~fNahRiYg~~rL~mm~~gfe~i~tfs~ 146 (177)
T PF03269_consen 71 SSIEHFGLGRYGDPIDPIGD-LRAMAKIKCVLKPGGLLFLGVPVGTDAIQFNAHRIYGPIRLAMMFYGFEWIDTFSG 146 (177)
T ss_pred chhccccccccCCCCCcccc-HHHHHHHHHhhccCCeEEEEeecCCcceEEecceeecHhHHHHHhCCcEEEeeecc
Confidence 2 123 3556678899999999997653211 12221111 1223568888876443
No 459
>PRK06194 hypothetical protein; Provisional
Probab=75.84 E-value=16 Score=32.37 Aligned_cols=77 Identities=14% Similarity=-0.016 Sum_probs=49.1
Q ss_pred CCeEEEEcCCCChHHHHHHHHC--CCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCc-C------CCC
Q 022962 122 NLKLVDVGTGAGLPGLVLAIAC--PDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVS-F------REQ 192 (289)
Q Consensus 122 ~~~VLDiGcG~G~~~l~la~~~--p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~-~------~~~ 192 (289)
+.++|=.|.+ |.+|..+++.+ .+.+|+.+|.+.+.++.........+. ++.++.+|+.+...-.. . .+.
T Consensus 6 ~k~vlVtGas-ggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~D~~d~~~~~~~~~~~~~~~g~ 83 (287)
T PRK06194 6 GKVAVITGAA-SGFGLAFARIGAALGMKLVLADVQQDALDRAVAELRAQGA-EVLGVRTDVSDAAQVEALADAALERFGA 83 (287)
T ss_pred CCEEEEeCCc-cHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHHHhcCC-eEEEEECCCCCHHHHHHHHHHHHHHcCC
Confidence 5678877755 55687777643 467999999987766554444333332 57888888876421100 0 135
Q ss_pred ceEEEEcC
Q 022962 193 YDVAVARA 200 (289)
Q Consensus 193 fD~V~sn~ 200 (289)
.|+|+.++
T Consensus 84 id~vi~~A 91 (287)
T PRK06194 84 VHLLFNNA 91 (287)
T ss_pred CCEEEECC
Confidence 79999884
No 460
>TIGR03206 benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. Members of this protein family are the enzyme 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. The enzymatic properties were confirmed experimentally in Rhodopseudomonas palustris; the enzyme is homotetrameric, and not sensitive to oxygen. This enzyme is part of proposed pathway for degradation of benzoyl-CoA to 3-hydroxypimeloyl-CoA that differs from the analogous in Thauera aromatica. It also may occur in degradation of the non-aromatic compound cyclohexane-1-carboxylate.
Probab=75.73 E-value=17 Score=31.13 Aligned_cols=77 Identities=16% Similarity=0.053 Sum_probs=50.4
Q ss_pred CCeEEEEcCCCChHHHHHHHHC--CCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCc-C------CCC
Q 022962 122 NLKLVDVGTGAGLPGLVLAIAC--PDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVS-F------REQ 192 (289)
Q Consensus 122 ~~~VLDiGcG~G~~~l~la~~~--p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~-~------~~~ 192 (289)
+.++|=.|++ |.+|..+++.+ .+.+|++++.+......+....+..+ .++.++.+|+.+...-.. . -..
T Consensus 3 ~~~ilItGas-~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~~~~~~~~~ 80 (250)
T TIGR03206 3 DKTAIVTGGG-GGIGGATCRRFAEEGAKVAVFDLNREAAEKVAADIRAKG-GNAQAFACDITDRDSVDTAVAAAEQALGP 80 (250)
T ss_pred CCEEEEeCCC-ChHHHHHHHHHHHCCCEEEEecCCHHHHHHHHHHHHhcC-CcEEEEEcCCCCHHHHHHHHHHHHHHcCC
Confidence 5688888864 55688877653 35799999999877666655554443 258888888875321000 0 135
Q ss_pred ceEEEEcC
Q 022962 193 YDVAVARA 200 (289)
Q Consensus 193 fD~V~sn~ 200 (289)
.|+++.++
T Consensus 81 ~d~vi~~a 88 (250)
T TIGR03206 81 VDVLVNNA 88 (250)
T ss_pred CCEEEECC
Confidence 79888874
No 461
>PRK12744 short chain dehydrogenase; Provisional
Probab=75.71 E-value=17 Score=31.64 Aligned_cols=101 Identities=13% Similarity=-0.012 Sum_probs=57.4
Q ss_pred CCeEEEEcCCCChHHHHHHHHC--CCCEEEEEeCC----hHHHHHHHHHHHHcCCCCEEEEeccccccCCCC-------c
Q 022962 122 NLKLVDVGTGAGLPGLVLAIAC--PDWKVTLLESM----NKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDV-------S 188 (289)
Q Consensus 122 ~~~VLDiGcG~G~~~l~la~~~--p~~~V~~iD~s----~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~-------~ 188 (289)
+.++|=.|+++ .+|..+|+.+ .+.+|+.++.+ .+..+...+..+..+. ++.++..|+.+...-. .
T Consensus 8 ~k~vlItGa~~-gIG~~~a~~l~~~G~~vv~i~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~D~~~~~~~~~~~~~~~~ 85 (257)
T PRK12744 8 GKVVLIAGGAK-NLGGLIARDLAAQGAKAVAIHYNSAASKADAEETVAAVKAAGA-KAVAFQADLTTAAAVEKLFDDAKA 85 (257)
T ss_pred CcEEEEECCCc-hHHHHHHHHHHHCCCcEEEEecCCccchHHHHHHHHHHHHhCC-cEEEEecCcCCHHHHHHHHHHHHH
Confidence 56899889654 5788888654 45677777543 2222222222222332 5888888887542110 0
Q ss_pred CCCCceEEEEcCc------------cc-----------HHHHHHHHccccccCeEEEEE
Q 022962 189 FREQYDVAVARAV------------AE-----------MRILAEYCLPLVRVGGLFVAA 224 (289)
Q Consensus 189 ~~~~fD~V~sn~~------------~~-----------~~~ll~~~~~~LkpgG~l~~~ 224 (289)
..+..|.++.++- .+ .-.+++.+.+.++++|.+++.
T Consensus 86 ~~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~~iv~~ 144 (257)
T PRK12744 86 AFGRPDIAINTVGKVLKKPIVEISEAEYDEMFAVNSKSAFFFIKEAGRHLNDNGKIVTL 144 (257)
T ss_pred hhCCCCEEEECCcccCCCCcccCCHHHHHHHHhhhhhHHHHHHHHHHHhhccCCCEEEE
Confidence 0136899998841 00 123456666677777776654
No 462
>cd08241 QOR1 Quinone oxidoreductase (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic
Probab=75.52 E-value=15 Score=32.47 Aligned_cols=94 Identities=17% Similarity=0.152 Sum_probs=52.9
Q ss_pred CCCeEEEEcCC--CChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCC---CCcCCCCceE
Q 022962 121 SNLKLVDVGTG--AGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGK---DVSFREQYDV 195 (289)
Q Consensus 121 ~~~~VLDiGcG--~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~---~~~~~~~fD~ 195 (289)
++.+|+-.||. .|...+.+|+.. +.+|++++.+++..+.++. .+.+. ++..+-.+... .......+|+
T Consensus 139 ~~~~vli~g~~~~~g~~~~~~a~~~-g~~v~~~~~~~~~~~~~~~----~g~~~--~~~~~~~~~~~~i~~~~~~~~~d~ 211 (323)
T cd08241 139 PGETVLVLGAAGGVGLAAVQLAKAL-GARVIAAASSEEKLALARA----LGADH--VIDYRDPDLRERVKALTGGRGVDV 211 (323)
T ss_pred CCCEEEEEcCCchHHHHHHHHHHHh-CCEEEEEeCCHHHHHHHHH----cCCce--eeecCCccHHHHHHHHcCCCCcEE
Confidence 47899999983 333334445443 5789999999877666643 34422 11111111100 0001245899
Q ss_pred EEEcCcccHHHHHHHHccccccCeEEEEE
Q 022962 196 AVARAVAEMRILAEYCLPLVRVGGLFVAA 224 (289)
Q Consensus 196 V~sn~~~~~~~ll~~~~~~LkpgG~l~~~ 224 (289)
++.+.-. ..+..+.+.++++|.++..
T Consensus 212 v~~~~g~---~~~~~~~~~~~~~g~~v~~ 237 (323)
T cd08241 212 VYDPVGG---DVFEASLRSLAWGGRLLVI 237 (323)
T ss_pred EEECccH---HHHHHHHHhhccCCEEEEE
Confidence 8865322 2445566788899988753
No 463
>PRK06125 short chain dehydrogenase; Provisional
Probab=75.51 E-value=17 Score=31.58 Aligned_cols=78 Identities=14% Similarity=0.095 Sum_probs=50.7
Q ss_pred CCeEEEEcCCCChHHHHHHHHC--CCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCC---cCCCCceEE
Q 022962 122 NLKLVDVGTGAGLPGLVLAIAC--PDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDV---SFREQYDVA 196 (289)
Q Consensus 122 ~~~VLDiGcG~G~~~l~la~~~--p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~---~~~~~fD~V 196 (289)
+.++|=.|+++| +|..++..+ .+++|++++.+++..+.+.+.++...-.++.++..|+.+...-. ..-++.|.+
T Consensus 7 ~k~vlItG~~~g-iG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~g~id~l 85 (259)
T PRK06125 7 GKRVLITGASKG-IGAAAAEAFAAEGCHLHLVARDADALEALAADLRAAHGVDVAVHALDLSSPEAREQLAAEAGDIDIL 85 (259)
T ss_pred CCEEEEeCCCch-HHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhhcCCceEEEEecCCCHHHHHHHHHHhCCCCEE
Confidence 678888897655 677776543 46799999999887766555444432235778888886532100 001468999
Q ss_pred EEcC
Q 022962 197 VARA 200 (289)
Q Consensus 197 ~sn~ 200 (289)
+.++
T Consensus 86 v~~a 89 (259)
T PRK06125 86 VNNA 89 (259)
T ss_pred EECC
Confidence 9873
No 464
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=75.37 E-value=25 Score=31.42 Aligned_cols=90 Identities=10% Similarity=0.127 Sum_probs=53.7
Q ss_pred eEEEEcCCCChHHHHHHHH--CCCCEEEEEeCChHHHHHHHHHH-------HHcC-C---------CCEEEEeccccccC
Q 022962 124 KLVDVGTGAGLPGLVLAIA--CPDWKVTLLESMNKRCVFLEHAV-------SLTQ-L---------LNVQIVRGRAETLG 184 (289)
Q Consensus 124 ~VLDiGcG~G~~~l~la~~--~p~~~V~~iD~s~~~l~~a~~~~-------~~~~-l---------~ni~~~~~d~~~~~ 184 (289)
+|.=||+| ..|..+|.. ..+.+|+++|++++.++.+++.+ .+.+ + .++++ ..|...+
T Consensus 5 kI~VIG~G--~mG~~ia~~la~~g~~V~~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~l~~-~~~~~~~- 80 (282)
T PRK05808 5 KIGVIGAG--TMGNGIAQVCAVAGYDVVMVDISDAAVDRGLATITKSLDRLVKKGKMTEADKEAALARITG-TTDLDDL- 80 (282)
T ss_pred EEEEEccC--HHHHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEE-eCCHHHh-
Confidence 46667765 444443332 23569999999999987655322 2222 1 12332 2333222
Q ss_pred CCCcCCCCceEEEEcCccc---HHHHHHHHccccccCeEEEE
Q 022962 185 KDVSFREQYDVAVARAVAE---MRILAEYCLPLVRVGGLFVA 223 (289)
Q Consensus 185 ~~~~~~~~fD~V~sn~~~~---~~~ll~~~~~~LkpgG~l~~ 223 (289)
+..|+|+-....+ ...+++++.+.++++..+.-
T Consensus 81 ------~~aDlVi~av~e~~~~k~~~~~~l~~~~~~~~il~s 116 (282)
T PRK05808 81 ------KDADLVIEAATENMDLKKKIFAQLDEIAKPEAILAT 116 (282)
T ss_pred ------ccCCeeeecccccHHHHHHHHHHHHhhCCCCcEEEE
Confidence 4579999775443 24888888888988877643
No 465
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=75.31 E-value=4.8 Score=37.94 Aligned_cols=94 Identities=15% Similarity=0.166 Sum_probs=50.0
Q ss_pred CCeEEEEcCC-CChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCcCCCCceEEEEcC
Q 022962 122 NLKLVDVGTG-AGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARA 200 (289)
Q Consensus 122 ~~~VLDiGcG-~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~~~~~fD~V~sn~ 200 (289)
+.+|+=+|+| .|..+...+... +.+|+.+|.+++.++.+.. ..+. .+.....+.+++... -..+|+|+...
T Consensus 167 ~~~VlViGaG~vG~~aa~~a~~l-Ga~V~v~d~~~~~~~~l~~---~~g~-~v~~~~~~~~~l~~~---l~~aDvVI~a~ 238 (370)
T TIGR00518 167 PGDVTIIGGGVVGTNAAKMANGL-GATVTILDINIDRLRQLDA---EFGG-RIHTRYSNAYEIEDA---VKRADLLIGAV 238 (370)
T ss_pred CceEEEEcCCHHHHHHHHHHHHC-CCeEEEEECCHHHHHHHHH---hcCc-eeEeccCCHHHHHHH---HccCCEEEEcc
Confidence 5678888886 333334444444 4689999999876544432 2222 222212222222111 14689999753
Q ss_pred -c--c-cHHHHHHHHccccccCeEEEE
Q 022962 201 -V--A-EMRILAEYCLPLVRVGGLFVA 223 (289)
Q Consensus 201 -~--~-~~~~ll~~~~~~LkpgG~l~~ 223 (289)
. . .+.-+-++..+.+++|+.++-
T Consensus 239 ~~~g~~~p~lit~~~l~~mk~g~vIvD 265 (370)
T TIGR00518 239 LIPGAKAPKLVSNSLVAQMKPGAVIVD 265 (370)
T ss_pred ccCCCCCCcCcCHHHHhcCCCCCEEEE
Confidence 1 1 121123555566889988764
No 466
>PRK12384 sorbitol-6-phosphate dehydrogenase; Provisional
Probab=75.24 E-value=17 Score=31.54 Aligned_cols=78 Identities=13% Similarity=0.069 Sum_probs=48.6
Q ss_pred CCeEEEEcCCCChHHHHHHHHC--CCCEEEEEeCChHHHHHHHHHHHH-cCCCCEEEEeccccccCCCC-------cCCC
Q 022962 122 NLKLVDVGTGAGLPGLVLAIAC--PDWKVTLLESMNKRCVFLEHAVSL-TQLLNVQIVRGRAETLGKDV-------SFRE 191 (289)
Q Consensus 122 ~~~VLDiGcG~G~~~l~la~~~--p~~~V~~iD~s~~~l~~a~~~~~~-~~l~ni~~~~~d~~~~~~~~-------~~~~ 191 (289)
+.+||=.|. +|.+|..+++.+ .+.+|+++|.+...........+. .+-.++.++..|+.+...-. ..-+
T Consensus 2 ~k~ilItG~-~~~IG~~la~~l~~~g~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~i~~~~~~~~~~~~ 80 (259)
T PRK12384 2 NQVAVVIGG-GQTLGAFLCHGLAEEGYRVAVADINSEKAANVAQEINAEYGEGMAYGFGADATSEQSVLALSRGVDEIFG 80 (259)
T ss_pred CCEEEEECC-CcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHhcCCceeEEEEccCCCHHHHHHHHHHHHHHcC
Confidence 357888895 566777777553 468999999988766544443332 22235888888887532100 0013
Q ss_pred CceEEEEcC
Q 022962 192 QYDVAVARA 200 (289)
Q Consensus 192 ~fD~V~sn~ 200 (289)
..|.|+.++
T Consensus 81 ~id~vv~~a 89 (259)
T PRK12384 81 RVDLLVYNA 89 (259)
T ss_pred CCCEEEECC
Confidence 679999874
No 467
>PLN02668 indole-3-acetate carboxyl methyltransferase
Probab=75.22 E-value=2.3 Score=40.38 Aligned_cols=33 Identities=15% Similarity=0.257 Sum_probs=23.9
Q ss_pred CCeEEEEcCCCChHHHHHHH--------H-------CCCCEEEEEeCC
Q 022962 122 NLKLVDVGTGAGLPGLVLAI--------A-------CPDWKVTLLESM 154 (289)
Q Consensus 122 ~~~VLDiGcG~G~~~l~la~--------~-------~p~~~V~~iD~s 154 (289)
..+|+|+|||+|..++.+.. . .|..+|+.-|.-
T Consensus 64 ~~~iaDlGcs~G~ntl~~vs~iI~~i~~~~~~~~~~~pe~qv~~nDLP 111 (386)
T PLN02668 64 PFTAVDLGCSSGSNTIHIIDVIVKHMSKRYESAGLDPPEFSAFFSDLP 111 (386)
T ss_pred ceeEEEecCCCCccHHHHHHHHHHHHHHHhhhcCCCCCcceEEecCCC
Confidence 46899999999988766521 1 245788888864
No 468
>PRK11559 garR tartronate semialdehyde reductase; Provisional
Probab=75.18 E-value=26 Score=31.53 Aligned_cols=110 Identities=13% Similarity=0.154 Sum_probs=58.2
Q ss_pred eEEEEcCCCChHHHHHHHH--CCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCcCCCCceEEEEcCc
Q 022962 124 KLVDVGTGAGLPGLVLAIA--CPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARAV 201 (289)
Q Consensus 124 ~VLDiGcG~G~~~l~la~~--~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~~~~~fD~V~sn~~ 201 (289)
+|-=||+| ..|..+|.. ..+.+|++.|.+++.++.+.+ .+. .+ ..+..+.. ...|+|+....
T Consensus 4 ~IgviG~G--~mG~~~a~~l~~~g~~v~~~d~~~~~~~~~~~----~g~---~~-~~~~~e~~------~~~d~vi~~vp 67 (296)
T PRK11559 4 KVGFIGLG--IMGKPMSKNLLKAGYSLVVYDRNPEAVAEVIA----AGA---ET-ASTAKAVA------EQCDVIITMLP 67 (296)
T ss_pred eEEEEccC--HHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHH----CCC---ee-cCCHHHHH------hcCCEEEEeCC
Confidence 45566765 444444432 245789999999877654432 232 21 22333321 35799987632
Q ss_pred --ccHHHHH---HHHccccccCeEEEEEEcCCcHHHHHHHHHHHHHhCCeEeEE
Q 022962 202 --AEMRILA---EYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLLQL 250 (289)
Q Consensus 202 --~~~~~ll---~~~~~~LkpgG~l~~~~g~~~~~ei~~~~~~l~~~g~~~~~~ 250 (289)
...+.++ +.+...+++|-.+ +-.+........++.+.+...|+..++.
T Consensus 68 ~~~~~~~v~~~~~~~~~~~~~g~ii-id~st~~~~~~~~l~~~~~~~g~~~~d~ 120 (296)
T PRK11559 68 NSPHVKEVALGENGIIEGAKPGTVV-IDMSSIAPLASREIAAALKAKGIEMLDA 120 (296)
T ss_pred CHHHHHHHHcCcchHhhcCCCCcEE-EECCCCCHHHHHHHHHHHHHcCCcEEEc
Confidence 2334443 2344556665544 4444444444555666666667654433
No 469
>PRK08862 short chain dehydrogenase; Provisional
Probab=75.14 E-value=15 Score=31.69 Aligned_cols=77 Identities=14% Similarity=-0.000 Sum_probs=52.5
Q ss_pred CCeEEEEcCCCChHHHHHHHHC--CCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCC--------CcCCC
Q 022962 122 NLKLVDVGTGAGLPGLVLAIAC--PDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKD--------VSFRE 191 (289)
Q Consensus 122 ~~~VLDiGcG~G~~~l~la~~~--p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~--------~~~~~ 191 (289)
+.++|=.|+++|+ |..+++.+ .+.+|+.++.+++.++.+.+.++..+. ++..+..|+.+...- ..+..
T Consensus 5 ~k~~lVtGas~GI-G~aia~~la~~G~~V~~~~r~~~~l~~~~~~i~~~~~-~~~~~~~D~~~~~~~~~~~~~~~~~~g~ 82 (227)
T PRK08862 5 SSIILITSAGSVL-GRTISCHFARLGATLILCDQDQSALKDTYEQCSALTD-NVYSFQLKDFSQESIRHLFDAIEQQFNR 82 (227)
T ss_pred CeEEEEECCccHH-HHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcCC-CeEEEEccCCCHHHHHHHHHHHHHHhCC
Confidence 6789999999985 66666543 578999999999888777666655553 466666676553211 01122
Q ss_pred CceEEEEcC
Q 022962 192 QYDVAVARA 200 (289)
Q Consensus 192 ~fD~V~sn~ 200 (289)
..|+++.|+
T Consensus 83 ~iD~li~na 91 (227)
T PRK08862 83 APDVLVNNW 91 (227)
T ss_pred CCCEEEECC
Confidence 789999884
No 470
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=75.02 E-value=23 Score=34.12 Aligned_cols=86 Identities=14% Similarity=0.086 Sum_probs=52.9
Q ss_pred CCCeEEEEcCCCChHHHHHHHHC--CCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCcCCCCceEEEE
Q 022962 121 SNLKLVDVGTGAGLPGLVLAIAC--PDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVA 198 (289)
Q Consensus 121 ~~~~VLDiGcG~G~~~l~la~~~--p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~~~~~fD~V~s 198 (289)
.+.+|+=+|+| .+|..+|+.. -+.+|+.+|+++.....+.. .|. ++. ++++.. ..+|+|+.
T Consensus 211 ~Gk~VlViG~G--~IG~~vA~~lr~~Ga~ViV~d~dp~ra~~A~~----~G~---~v~--~l~eal------~~aDVVI~ 273 (425)
T PRK05476 211 AGKVVVVAGYG--DVGKGCAQRLRGLGARVIVTEVDPICALQAAM----DGF---RVM--TMEEAA------ELGDIFVT 273 (425)
T ss_pred CCCEEEEECCC--HHHHHHHHHHHhCCCEEEEEcCCchhhHHHHh----cCC---Eec--CHHHHH------hCCCEEEE
Confidence 47899999987 4565555432 35699999999876433322 243 221 333321 35899987
Q ss_pred cCcccHHHHH-HHHccccccCeEEEEEE
Q 022962 199 RAVAEMRILA-EYCLPLVRVGGLFVAAK 225 (289)
Q Consensus 199 n~~~~~~~ll-~~~~~~LkpgG~l~~~~ 225 (289)
.. .. ..++ ......+|+|+.++..-
T Consensus 274 aT-G~-~~vI~~~~~~~mK~GailiNvG 299 (425)
T PRK05476 274 AT-GN-KDVITAEHMEAMKDGAILANIG 299 (425)
T ss_pred CC-CC-HHHHHHHHHhcCCCCCEEEEcC
Confidence 53 22 2344 36778899999887643
No 471
>PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional
Probab=74.98 E-value=15 Score=35.34 Aligned_cols=39 Identities=28% Similarity=0.401 Sum_probs=28.9
Q ss_pred CCeEEEEcCCCChHHHHHHHHC-CCCEEEEEeCChHHHHHHH
Q 022962 122 NLKLVDVGTGAGLPGLVLAIAC-PDWKVTLLESMNKRCVFLE 162 (289)
Q Consensus 122 ~~~VLDiGcG~G~~~l~la~~~-p~~~V~~iD~s~~~l~~a~ 162 (289)
..+|-=|| .|..|+.+|..+ .+.+|+++|++++.++.++
T Consensus 6 ~mkI~vIG--lGyvGlpmA~~la~~~~V~g~D~~~~~ve~l~ 45 (425)
T PRK15182 6 EVKIAIIG--LGYVGLPLAVEFGKSRQVVGFDVNKKRILELK 45 (425)
T ss_pred CCeEEEEC--cCcchHHHHHHHhcCCEEEEEeCCHHHHHHHH
Confidence 35666665 467777777654 3479999999999988776
No 472
>PRK09135 pteridine reductase; Provisional
Probab=74.95 E-value=19 Score=30.82 Aligned_cols=78 Identities=12% Similarity=-0.002 Sum_probs=48.1
Q ss_pred CCeEEEEcCCCChHHHHHHHHC--CCCEEEEEeCC-hHHHHHHHHHHHHcCCCCEEEEeccccccCCCC-cC------CC
Q 022962 122 NLKLVDVGTGAGLPGLVLAIAC--PDWKVTLLESM-NKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDV-SF------RE 191 (289)
Q Consensus 122 ~~~VLDiGcG~G~~~l~la~~~--p~~~V~~iD~s-~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~-~~------~~ 191 (289)
+.+||=.|+ +|.+|..+++.+ .+.+|++++.+ +................++.++.+|+.+...-. .+ -+
T Consensus 6 ~~~vlItGa-~g~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~ 84 (249)
T PRK09135 6 AKVALITGG-ARRIGAAIARTLHAAGYRVAIHYHRSAAEADALAAELNALRPGSAAALQADLLDPDALPELVAACVAAFG 84 (249)
T ss_pred CCEEEEeCC-CchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhhcCCceEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence 568999996 566788877653 46899999975 333333333333332335888888987643110 00 12
Q ss_pred CceEEEEcC
Q 022962 192 QYDVAVARA 200 (289)
Q Consensus 192 ~fD~V~sn~ 200 (289)
..|.|+.++
T Consensus 85 ~~d~vi~~a 93 (249)
T PRK09135 85 RLDALVNNA 93 (249)
T ss_pred CCCEEEECC
Confidence 579999774
No 473
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=74.82 E-value=8.4 Score=32.95 Aligned_cols=76 Identities=14% Similarity=0.222 Sum_probs=40.8
Q ss_pred CCeEEEEcCCC-ChH-HHHHHHHCCCCEEEEEeCC-------------------hHHHHHHHHHHHHcCC-CCEEEEecc
Q 022962 122 NLKLVDVGTGA-GLP-GLVLAIACPDWKVTLLESM-------------------NKRCVFLEHAVSLTQL-LNVQIVRGR 179 (289)
Q Consensus 122 ~~~VLDiGcG~-G~~-~l~la~~~p~~~V~~iD~s-------------------~~~l~~a~~~~~~~~l-~ni~~~~~d 179 (289)
..+|+=+|||. |.. +..|+. ..-.+++.+|.+ ....+.+.+.+++... -+++.+...
T Consensus 21 ~~~VlviG~GglGs~ia~~La~-~Gv~~i~lvD~d~ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np~v~i~~~~~~ 99 (202)
T TIGR02356 21 NSHVLIIGAGGLGSPAALYLAG-AGVGTIVIVDDDHVDLSNLQRQILFTEEDVGRPKVEVAAQRLRELNSDIQVTALKER 99 (202)
T ss_pred CCCEEEECCCHHHHHHHHHHHH-cCCCeEEEecCCEEcccchhhhhccChhhCCChHHHHHHHHHHHhCCCCEEEEehhc
Confidence 67899999984 332 222332 344699999987 2344555555555432 134444444
Q ss_pred ccccCCCCcCCCCceEEEEc
Q 022962 180 AETLGKDVSFREQYDVAVAR 199 (289)
Q Consensus 180 ~~~~~~~~~~~~~fD~V~sn 199 (289)
+..-... .+-..||+|+..
T Consensus 100 i~~~~~~-~~~~~~D~Vi~~ 118 (202)
T TIGR02356 100 VTAENLE-LLINNVDLVLDC 118 (202)
T ss_pred CCHHHHH-HHHhCCCEEEEC
Confidence 4321100 011468888864
No 474
>PLN02702 L-idonate 5-dehydrogenase
Probab=74.77 E-value=19 Score=33.22 Aligned_cols=98 Identities=15% Similarity=0.175 Sum_probs=54.9
Q ss_pred CCCeEEEEcCC-CChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEe---ccccc-cC-CCCcCCCCce
Q 022962 121 SNLKLVDVGTG-AGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVR---GRAET-LG-KDVSFREQYD 194 (289)
Q Consensus 121 ~~~~VLDiGcG-~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~---~d~~~-~~-~~~~~~~~fD 194 (289)
++.+||=+|+| .|..++.+|+......|+++|.++...+.++ .+|.+.+..+. .+..+ +. ......+.+|
T Consensus 181 ~g~~vlI~g~g~vG~~~~~~a~~~G~~~v~~~~~~~~~~~~~~----~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 256 (364)
T PLN02702 181 PETNVLVMGAGPIGLVTMLAARAFGAPRIVIVDVDDERLSVAK----QLGADEIVLVSTNIEDVESEVEEIQKAMGGGID 256 (364)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHH----HhCCCEEEecCcccccHHHHHHHHhhhcCCCCC
Confidence 46788888753 2334455666654456899999887766554 34553322211 11111 00 0000124689
Q ss_pred EEEEcCcccHHHHHHHHccccccCeEEEEE
Q 022962 195 VAVARAVAEMRILAEYCLPLVRVGGLFVAA 224 (289)
Q Consensus 195 ~V~sn~~~~~~~ll~~~~~~LkpgG~l~~~ 224 (289)
+|+-..-. ...+..+.+.|+++|+++..
T Consensus 257 ~vid~~g~--~~~~~~~~~~l~~~G~~v~~ 284 (364)
T PLN02702 257 VSFDCVGF--NKTMSTALEATRAGGKVCLV 284 (364)
T ss_pred EEEECCCC--HHHHHHHHHHHhcCCEEEEE
Confidence 98865321 23567777889999998754
No 475
>PRK12746 short chain dehydrogenase; Provisional
Probab=74.68 E-value=21 Score=30.87 Aligned_cols=60 Identities=7% Similarity=-0.013 Sum_probs=36.9
Q ss_pred CCeEEEEcCCCChHHHHHHHHC--CCCEEEEE-eCChHHHHHHHHHHHHcCCCCEEEEecccccc
Q 022962 122 NLKLVDVGTGAGLPGLVLAIAC--PDWKVTLL-ESMNKRCVFLEHAVSLTQLLNVQIVRGRAETL 183 (289)
Q Consensus 122 ~~~VLDiGcG~G~~~l~la~~~--p~~~V~~i-D~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~ 183 (289)
+.+++=.|+ +|.+|..+++.+ .+.+|+.+ ..+.+.++.........+ .++.+++.|+.+.
T Consensus 6 ~~~ilItGa-sg~iG~~la~~l~~~G~~v~i~~~r~~~~~~~~~~~~~~~~-~~~~~~~~D~~d~ 68 (254)
T PRK12746 6 GKVALVTGA-SRGIGRAIAMRLANDGALVAIHYGRNKQAADETIREIESNG-GKAFLIEADLNSI 68 (254)
T ss_pred CCEEEEeCC-CchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcC-CcEEEEEcCcCCH
Confidence 568888885 677888888653 45677664 455544433332222222 2578888888764
No 476
>PLN02494 adenosylhomocysteinase
Probab=74.33 E-value=17 Score=35.57 Aligned_cols=86 Identities=14% Similarity=0.068 Sum_probs=53.4
Q ss_pred CCCeEEEEcCCCChHHHHHHHHC--CCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCcCCCCceEEEE
Q 022962 121 SNLKLVDVGTGAGLPGLVLAIAC--PDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVA 198 (289)
Q Consensus 121 ~~~~VLDiGcG~G~~~l~la~~~--p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~~~~~fD~V~s 198 (289)
.+.+|+=+|+| .+|..+|+.. -+.+|+.+|.++.....+ ...|.. +. ++++.- ...|+|+.
T Consensus 253 aGKtVvViGyG--~IGr~vA~~aka~Ga~VIV~e~dp~r~~eA----~~~G~~---vv--~leEal------~~ADVVI~ 315 (477)
T PLN02494 253 AGKVAVICGYG--DVGKGCAAAMKAAGARVIVTEIDPICALQA----LMEGYQ---VL--TLEDVV------SEADIFVT 315 (477)
T ss_pred CCCEEEEECCC--HHHHHHHHHHHHCCCEEEEEeCCchhhHHH----HhcCCe---ec--cHHHHH------hhCCEEEE
Confidence 37899999988 4566655432 257999999998653333 223432 21 333321 35799887
Q ss_pred cCcccHHHHHHHHccccccCeEEEEE
Q 022962 199 RAVAEMRILAEYCLPLVRVGGLFVAA 224 (289)
Q Consensus 199 n~~~~~~~ll~~~~~~LkpgG~l~~~ 224 (289)
.. .....+..+....+|+||.++-.
T Consensus 316 tT-Gt~~vI~~e~L~~MK~GAiLiNv 340 (477)
T PLN02494 316 TT-GNKDIIMVDHMRKMKNNAIVCNI 340 (477)
T ss_pred CC-CCccchHHHHHhcCCCCCEEEEc
Confidence 42 23333446777899999998864
No 477
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=74.26 E-value=18 Score=32.65 Aligned_cols=90 Identities=18% Similarity=0.082 Sum_probs=52.8
Q ss_pred CeEEEEcCCCChHHHHHHHH--CCCCEEEEEeCChHHHHHHHHHHH-------HcCC----------CCEEEEecccccc
Q 022962 123 LKLVDVGTGAGLPGLVLAIA--CPDWKVTLLESMNKRCVFLEHAVS-------LTQL----------LNVQIVRGRAETL 183 (289)
Q Consensus 123 ~~VLDiGcG~G~~~l~la~~--~p~~~V~~iD~s~~~l~~a~~~~~-------~~~l----------~ni~~~~~d~~~~ 183 (289)
.+|.=||+| ..|..+|.. ..+.+|+++|.+++.++.+++.++ +.+. .++.+ ..+.+.+
T Consensus 5 ~~V~vIG~G--~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-~~~~~~~ 81 (295)
T PLN02545 5 KKVGVVGAG--QMGSGIAQLAAAAGMDVWLLDSDPAALSRGLDSISSSLARLVKKGKMSQEEADATLGRIRC-TTNLEEL 81 (295)
T ss_pred CEEEEECCC--HHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhceEe-eCCHHHh
Confidence 356667765 445454443 246799999999998876655332 1111 11222 2233222
Q ss_pred CCCCcCCCCceEEEEcCc---ccHHHHHHHHccccccCeEEE
Q 022962 184 GKDVSFREQYDVAVARAV---AEMRILAEYCLPLVRVGGLFV 222 (289)
Q Consensus 184 ~~~~~~~~~fD~V~sn~~---~~~~~ll~~~~~~LkpgG~l~ 222 (289)
...|+|+-... .....+++++...++++..++
T Consensus 82 -------~~aD~Vieav~e~~~~k~~v~~~l~~~~~~~~il~ 116 (295)
T PLN02545 82 -------RDADFIIEAIVESEDLKKKLFSELDRICKPSAILA 116 (295)
T ss_pred -------CCCCEEEEcCccCHHHHHHHHHHHHhhCCCCcEEE
Confidence 34699987643 234567777788888887665
No 478
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=74.21 E-value=26 Score=33.48 Aligned_cols=71 Identities=23% Similarity=0.202 Sum_probs=45.8
Q ss_pred CeEEEEcCCCChHHHHHHHHC--CCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCC-CcCCCCceEEEEc
Q 022962 123 LKLVDVGTGAGLPGLVLAIAC--PDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKD-VSFREQYDVAVAR 199 (289)
Q Consensus 123 ~~VLDiGcG~G~~~l~la~~~--p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~-~~~~~~fD~V~sn 199 (289)
.+|+=+|+ |..|..+++.. .+..|+.+|.+++.++.+++. ..++.++.+|..+...- ...-+.+|.|++.
T Consensus 232 ~~iiIiG~--G~~g~~l~~~L~~~~~~v~vid~~~~~~~~~~~~-----~~~~~~i~gd~~~~~~L~~~~~~~a~~vi~~ 304 (453)
T PRK09496 232 KRVMIVGG--GNIGYYLAKLLEKEGYSVKLIERDPERAEELAEE-----LPNTLVLHGDGTDQELLEEEGIDEADAFIAL 304 (453)
T ss_pred CEEEEECC--CHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHH-----CCCCeEEECCCCCHHHHHhcCCccCCEEEEC
Confidence 45655555 78888887654 357899999999887665552 12467788888653210 0012468888875
Q ss_pred C
Q 022962 200 A 200 (289)
Q Consensus 200 ~ 200 (289)
.
T Consensus 305 ~ 305 (453)
T PRK09496 305 T 305 (453)
T ss_pred C
Confidence 3
No 479
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=74.13 E-value=27 Score=31.66 Aligned_cols=92 Identities=13% Similarity=0.114 Sum_probs=51.5
Q ss_pred CeEEEEcCCCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHH-cCC-----------CCEEEEeccccccCCCCcCC
Q 022962 123 LKLVDVGTGAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSL-TQL-----------LNVQIVRGRAETLGKDVSFR 190 (289)
Q Consensus 123 ~~VLDiGcG~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~-~~l-----------~ni~~~~~d~~~~~~~~~~~ 190 (289)
.+|.=||+|.=..++.......+.+|+++|.+++.++.+++.... .+. .++++ ..|..+. -
T Consensus 5 ~~I~vIGaG~mG~~iA~~l~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-~~~~~~~------~ 77 (311)
T PRK06130 5 QNLAIIGAGTMGSGIAALFARKGLQVVLIDVMEGALERARGVIERALGVYAPLGIASAGMGRIRM-EAGLAAA------V 77 (311)
T ss_pred cEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHHHHHhhhcccHHHHhhceEE-eCCHHHH------h
Confidence 357777776433233322223467999999999998887764321 111 12222 1222221 1
Q ss_pred CCceEEEEcCccc---HHHHHHHHccccccCeEE
Q 022962 191 EQYDVAVARAVAE---MRILAEYCLPLVRVGGLF 221 (289)
Q Consensus 191 ~~fD~V~sn~~~~---~~~ll~~~~~~LkpgG~l 221 (289)
...|+|+..-..+ ...++.++...++++-.+
T Consensus 78 ~~aDlVi~av~~~~~~~~~v~~~l~~~~~~~~ii 111 (311)
T PRK06130 78 SGADLVIEAVPEKLELKRDVFARLDGLCDPDTIF 111 (311)
T ss_pred ccCCEEEEeccCcHHHHHHHHHHHHHhCCCCcEE
Confidence 3579998764332 467777777777665544
No 480
>PLN02896 cinnamyl-alcohol dehydrogenase
Probab=74.11 E-value=10 Score=34.95 Aligned_cols=77 Identities=13% Similarity=0.025 Sum_probs=47.7
Q ss_pred CCCeEEEEcCCCChHHHHHHHHC--CCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCcCCCCceEEEE
Q 022962 121 SNLKLVDVGTGAGLPGLVLAIAC--PDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVA 198 (289)
Q Consensus 121 ~~~~VLDiGcG~G~~~l~la~~~--p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~~~~~fD~V~s 198 (289)
.+.+||=.|. +|++|..+++.+ .+.+|++++.+............ ...+++++.+|+.+...-...-..+|.|+.
T Consensus 9 ~~~~vLVtG~-~GfIG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~--~~~~~~~~~~Dl~~~~~~~~~~~~~d~Vih 85 (353)
T PLN02896 9 ATGTYCVTGA-TGYIGSWLVKLLLQRGYTVHATLRDPAKSLHLLSKWK--EGDRLRLFRADLQEEGSFDEAVKGCDGVFH 85 (353)
T ss_pred CCCEEEEECC-CcHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHhhc--cCCeEEEEECCCCCHHHHHHHHcCCCEEEE
Confidence 3678998884 789999888754 45799999877654332222111 123588899998764211001134788886
Q ss_pred cC
Q 022962 199 RA 200 (289)
Q Consensus 199 n~ 200 (289)
.+
T Consensus 86 ~A 87 (353)
T PLN02896 86 VA 87 (353)
T ss_pred CC
Confidence 63
No 481
>PRK08655 prephenate dehydrogenase; Provisional
Probab=74.09 E-value=20 Score=34.64 Aligned_cols=86 Identities=15% Similarity=0.195 Sum_probs=51.1
Q ss_pred eEEEEcCCCChHHHHHHHHC--CCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCcCCCCceEEEEc-C
Q 022962 124 KLVDVGTGAGLPGLVLAIAC--PDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVAR-A 200 (289)
Q Consensus 124 ~VLDiGcG~G~~~l~la~~~--p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~~~~~fD~V~sn-~ 200 (289)
+|.=|| |+|.+|..+|... .+.+|+++|.+++.+ .+.+...|. .+ ..+..+.. ...|+|+.. .
T Consensus 2 kI~IIG-G~G~mG~slA~~L~~~G~~V~v~~r~~~~~---~~~a~~~gv---~~-~~~~~e~~------~~aDvVIlavp 67 (437)
T PRK08655 2 KISIIG-GTGGLGKWFARFLKEKGFEVIVTGRDPKKG---KEVAKELGV---EY-ANDNIDAA------KDADIVIISVP 67 (437)
T ss_pred EEEEEe-cCCHHHHHHHHHHHHCCCEEEEEECChHHH---HHHHHHcCC---ee-ccCHHHHh------ccCCEEEEecC
Confidence 355566 4566776666543 346899999987653 222333443 21 22322211 357998854 4
Q ss_pred cccHHHHHHHHccccccCeEEEE
Q 022962 201 VAEMRILAEYCLPLVRVGGLFVA 223 (289)
Q Consensus 201 ~~~~~~ll~~~~~~LkpgG~l~~ 223 (289)
......+++++...+++|..++-
T Consensus 68 ~~~~~~vl~~l~~~l~~~~iViD 90 (437)
T PRK08655 68 INVTEDVIKEVAPHVKEGSLLMD 90 (437)
T ss_pred HHHHHHHHHHHHhhCCCCCEEEE
Confidence 55567888888888888775543
No 482
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=73.79 E-value=10 Score=37.48 Aligned_cols=93 Identities=13% Similarity=0.231 Sum_probs=55.6
Q ss_pred CCeEEEEcCCC-ChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccc-----------cCCC---
Q 022962 122 NLKLVDVGTGA-GLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAET-----------LGKD--- 186 (289)
Q Consensus 122 ~~~VLDiGcG~-G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~-----------~~~~--- 186 (289)
+.+|+=+|+|. |..++.+++.. ++.|+++|.++..++.++. +|.+-+.+ |..+ +..+
T Consensus 164 ~akVlViGaG~iGl~Aa~~ak~l-GA~V~v~d~~~~rle~a~~----lGa~~v~v---~~~e~g~~~~gYa~~~s~~~~~ 235 (511)
T TIGR00561 164 PAKVLVIGAGVAGLAAIGAANSL-GAIVRAFDTRPEVKEQVQS----MGAEFLEL---DFKEEGGSGDGYAKVMSEEFIA 235 (511)
T ss_pred CCEEEEECCCHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHH----cCCeEEec---cccccccccccceeecCHHHHH
Confidence 68999999974 34445555554 5689999999987665544 45432222 2111 0000
Q ss_pred ------CcCCCCceEEEEcCc----ccHHHHHHHHccccccCeEEE
Q 022962 187 ------VSFREQYDVAVARAV----AEMRILAEYCLPLVRVGGLFV 222 (289)
Q Consensus 187 ------~~~~~~fD~V~sn~~----~~~~~ll~~~~~~LkpgG~l~ 222 (289)
.+.-..+|+|+..+. ..+.-+.++..+.+|||+.++
T Consensus 236 ~~~~~~~e~~~~~DIVI~TalipG~~aP~Lit~emv~~MKpGsvIV 281 (511)
T TIGR00561 236 AEMELFAAQAKEVDIIITTALIPGKPAPKLITEEMVDSMKAGSVIV 281 (511)
T ss_pred HHHHHHHHHhCCCCEEEECcccCCCCCCeeehHHHHhhCCCCCEEE
Confidence 000146999987651 122345667778899998877
No 483
>PRK07063 short chain dehydrogenase; Provisional
Probab=73.78 E-value=19 Score=31.37 Aligned_cols=78 Identities=18% Similarity=0.061 Sum_probs=51.5
Q ss_pred CCeEEEEcCCCChHHHHHHHHC--CCCEEEEEeCChHHHHHHHHHHHHcC-CCCEEEEeccccccCCCCc-C------CC
Q 022962 122 NLKLVDVGTGAGLPGLVLAIAC--PDWKVTLLESMNKRCVFLEHAVSLTQ-LLNVQIVRGRAETLGKDVS-F------RE 191 (289)
Q Consensus 122 ~~~VLDiGcG~G~~~l~la~~~--p~~~V~~iD~s~~~l~~a~~~~~~~~-l~ni~~~~~d~~~~~~~~~-~------~~ 191 (289)
+.++|=.|+++| +|..+++.+ .+.+|+.+|.+++.++...+..+..+ -.++.++..|+.+...-.. + -+
T Consensus 7 ~k~vlVtGas~g-IG~~~a~~l~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~g 85 (260)
T PRK07063 7 GKVALVTGAAQG-IGAAIARAFAREGAAVALADLDAALAERAAAAIARDVAGARVLAVPADVTDAASVAAAVAAAEEAFG 85 (260)
T ss_pred CCEEEEECCCch-HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhccCCceEEEEEccCCCHHHHHHHHHHHHHHhC
Confidence 678999998655 577777653 46899999999887766655554421 1258888888875421100 0 14
Q ss_pred CceEEEEcC
Q 022962 192 QYDVAVARA 200 (289)
Q Consensus 192 ~fD~V~sn~ 200 (289)
..|.++.|+
T Consensus 86 ~id~li~~a 94 (260)
T PRK07063 86 PLDVLVNNA 94 (260)
T ss_pred CCcEEEECC
Confidence 689999874
No 484
>cd05197 GH4_glycoside_hydrolases Glycoside Hydrases Family 4. Glycoside hydrolases cleave glycosidic bonds to release smaller sugars from oligo- or polysaccharides. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by GH4 glycoside hydrolases. Other organisms (such as archaea and Thermotoga maritima) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. GH4 family members include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. They require two cofactors, NAD+ and a divalent metal (Mn2+, Ni2+, Mg2+), for activity. Some also require reducing conditions. GH4 glycoside hydrolases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families in
Probab=73.39 E-value=23 Score=34.10 Aligned_cols=68 Identities=18% Similarity=0.136 Sum_probs=43.2
Q ss_pred eEEEEcCCCChHHHHHHH-------HCCCCEEEEEeCChHHHHH----HHHHHHHcCCCCEEEEe-ccccccCCCCcCCC
Q 022962 124 KLVDVGTGAGLPGLVLAI-------ACPDWKVTLLESMNKRCVF----LEHAVSLTQLLNVQIVR-GRAETLGKDVSFRE 191 (289)
Q Consensus 124 ~VLDiGcG~G~~~l~la~-------~~p~~~V~~iD~s~~~l~~----a~~~~~~~~l~ni~~~~-~d~~~~~~~~~~~~ 191 (289)
+|.=||.||. ++..+.. .++..+|+.+|++++.++. +++.+++.|. ++++.. .|..+.- .
T Consensus 2 KI~iIGgGS~-~tp~li~~l~~~~~~l~~~ei~L~Did~~Rl~~v~~l~~~~~~~~g~-~~~v~~ttD~~~Al------~ 73 (425)
T cd05197 2 KIAIIGGGSS-FTPELVSGLLKTPEELPISEVTLYDIDEERLDIILTIAKRYVEEVGA-DIKFEKTMDLEDAI------I 73 (425)
T ss_pred EEEEECCchH-hHHHHHHHHHcChhhCCCCEEEEEcCCHHHHHHHHHHHHHHHHhhCC-CeEEEEeCCHHHHh------C
Confidence 4666899996 5544321 2456899999999987775 5556666665 344432 3433321 2
Q ss_pred CceEEEEc
Q 022962 192 QYDVAVAR 199 (289)
Q Consensus 192 ~fD~V~sn 199 (289)
..|+|++.
T Consensus 74 gADfVi~~ 81 (425)
T cd05197 74 DADFVINQ 81 (425)
T ss_pred CCCEEEEe
Confidence 47898875
No 485
>PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional
Probab=73.34 E-value=18 Score=32.83 Aligned_cols=105 Identities=10% Similarity=0.014 Sum_probs=59.1
Q ss_pred CCChHHHHHHHHC--CCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCcCCCCceEEEEcCcc--cHHH
Q 022962 131 GAGLPGLVLAIAC--PDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAVARAVA--EMRI 206 (289)
Q Consensus 131 G~G~~~l~la~~~--p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~~~~~fD~V~sn~~~--~~~~ 206 (289)
|.|.+|..+|... .+.+|+++|.+++.++.+.+ .+. .. ..+..+.. ...|+|+..-.. ..+.
T Consensus 8 GlG~mG~~mA~~l~~~G~~V~v~d~~~~~~~~~~~----~g~---~~-~~s~~~~~------~~aDvVi~~vp~~~~~~~ 73 (296)
T PRK15461 8 GLGQMGSPMASNLLKQGHQLQVFDVNPQAVDALVD----KGA---TP-AASPAQAA------AGAEFVITMLPNGDLVRS 73 (296)
T ss_pred eeCHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHH----cCC---cc-cCCHHHHH------hcCCEEEEecCCHHHHHH
Confidence 4556666666542 35699999999987655433 232 11 11222221 346888865322 2344
Q ss_pred HHH---HHccccccCeEEEEEEcCCcHHHHHHHHHHHHHhCCeEeEE
Q 022962 207 LAE---YCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLLQL 250 (289)
Q Consensus 207 ll~---~~~~~LkpgG~l~~~~g~~~~~ei~~~~~~l~~~g~~~~~~ 250 (289)
++. .+...+++ |.+++..+........++.+.+...|+..++.
T Consensus 74 vl~~~~~i~~~l~~-g~lvid~sT~~p~~~~~l~~~l~~~g~~~lda 119 (296)
T PRK15461 74 VLFGENGVCEGLSR-DALVIDMSTIHPLQTDKLIADMQAKGFSMMDV 119 (296)
T ss_pred HHcCcccHhhcCCC-CCEEEECCCCCHHHHHHHHHHHHHcCCcEEEc
Confidence 443 23334544 45556565555566667777788888876654
No 486
>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed
Probab=73.31 E-value=20 Score=30.72 Aligned_cols=77 Identities=13% Similarity=0.038 Sum_probs=49.5
Q ss_pred CCeEEEEcCCCChHHHHHHHHC--CCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCC-cC------CCC
Q 022962 122 NLKLVDVGTGAGLPGLVLAIAC--PDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDV-SF------REQ 192 (289)
Q Consensus 122 ~~~VLDiGcG~G~~~l~la~~~--p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~-~~------~~~ 192 (289)
+.+||=.|+ +|.+|..+++.+ .+.+|++++.+...+..+.......+ .++.++.+|+.+...-. .+ -+.
T Consensus 6 ~~~ilItGa-sg~iG~~l~~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~~-~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~ 83 (251)
T PRK12826 6 GRVALVTGA-ARGIGRAIAVRLAADGAEVIVVDICGDDAAATAELVEAAG-GKARARQVDVRDRAALKAAVAAGVEDFGR 83 (251)
T ss_pred CCEEEEcCC-CCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC-CeEEEEECCCCCHHHHHHHHHHHHHHhCC
Confidence 568888886 566788777543 35799999999766555544444433 25888888887642100 00 036
Q ss_pred ceEEEEcC
Q 022962 193 YDVAVARA 200 (289)
Q Consensus 193 fD~V~sn~ 200 (289)
+|.|+.++
T Consensus 84 ~d~vi~~a 91 (251)
T PRK12826 84 LDILVANA 91 (251)
T ss_pred CCEEEECC
Confidence 89998873
No 487
>cd08242 MDR_like Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family, including threonine dehydrogenase. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reducta
Probab=73.26 E-value=33 Score=30.77 Aligned_cols=86 Identities=22% Similarity=0.187 Sum_probs=53.9
Q ss_pred CCCeEEEEcCCCChHHHHH---HHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCcCCCCceEEE
Q 022962 121 SNLKLVDVGTGAGLPGLVL---AIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVSFREQYDVAV 197 (289)
Q Consensus 121 ~~~~VLDiGcG~G~~~l~l---a~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~~~~~fD~V~ 197 (289)
++.+||=.|+ |.++..+ |+.. +.+|++++.+++..+.+++ +|.+.+... .+.. ..+.+|+|+
T Consensus 155 ~g~~vlV~g~--g~vg~~~~q~a~~~-G~~vi~~~~~~~~~~~~~~----~g~~~~~~~----~~~~----~~~~~d~vi 219 (319)
T cd08242 155 PGDKVAVLGD--GKLGLLIAQVLALT-GPDVVLVGRHSEKLALARR----LGVETVLPD----EAES----EGGGFDVVV 219 (319)
T ss_pred CCCEEEEECC--CHHHHHHHHHHHHc-CCeEEEEcCCHHHHHHHHH----cCCcEEeCc----cccc----cCCCCCEEE
Confidence 4778888864 5666654 4333 5679999999988777765 555322111 1111 125699998
Q ss_pred EcCcccHHHHHHHHccccccCeEEEE
Q 022962 198 ARAVAEMRILAEYCLPLVRVGGLFVA 223 (289)
Q Consensus 198 sn~~~~~~~ll~~~~~~LkpgG~l~~ 223 (289)
-..-. ...+..+.+.|+++|+++.
T Consensus 220 d~~g~--~~~~~~~~~~l~~~g~~v~ 243 (319)
T cd08242 220 EATGS--PSGLELALRLVRPRGTVVL 243 (319)
T ss_pred ECCCC--hHHHHHHHHHhhcCCEEEE
Confidence 65322 2345566678899999886
No 488
>PF13561 adh_short_C2: Enoyl-(Acyl carrier protein) reductase; PDB: 2UV8_B 3HMJ_A 2VKZ_C 1O5I_A 2P91_C 2OP0_A 2OL4_B 1NHW_A 1NNU_B 2O2Y_B ....
Probab=73.23 E-value=7.1 Score=33.78 Aligned_cols=94 Identities=21% Similarity=0.236 Sum_probs=59.4
Q ss_pred cCC-CChHHHHHHHHC--CCCEEEEEeCChHHHHH-HHHHHHHcCCCCEEEEeccccccCCC--------CcCCCCceEE
Q 022962 129 GTG-AGLPGLVLAIAC--PDWKVTLLESMNKRCVF-LEHAVSLTQLLNVQIVRGRAETLGKD--------VSFREQYDVA 196 (289)
Q Consensus 129 GcG-~G~~~l~la~~~--p~~~V~~iD~s~~~l~~-a~~~~~~~~l~ni~~~~~d~~~~~~~--------~~~~~~fD~V 196 (289)
|+| ++.+|..+|+.+ .+++|+.+|.+.+.++. +++..++.+. +++..|+.+-..- ..+.+..|++
T Consensus 1 g~~~s~GiG~aia~~l~~~Ga~V~~~~~~~~~~~~~~~~l~~~~~~---~~~~~D~~~~~~v~~~~~~~~~~~~g~iD~l 77 (241)
T PF13561_consen 1 GAGSSSGIGRAIARALAEEGANVILTDRNEEKLADALEELAKEYGA---EVIQCDLSDEESVEALFDEAVERFGGRIDIL 77 (241)
T ss_dssp STSSTSHHHHHHHHHHHHTTEEEEEEESSHHHHHHHHHHHHHHTTS---EEEESCTTSHHHHHHHHHHHHHHHCSSESEE
T ss_pred CCCCCCChHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHHHHHcCC---ceEeecCcchHHHHHHHHHHHhhcCCCeEEE
Confidence 666 345677777653 47899999999987533 3344444542 3588888643210 0112678998
Q ss_pred EEcC----c-----------------------ccHHHHHHHHccccccCeEEEEEE
Q 022962 197 VARA----V-----------------------AEMRILAEYCLPLVRVGGLFVAAK 225 (289)
Q Consensus 197 ~sn~----~-----------------------~~~~~ll~~~~~~LkpgG~l~~~~ 225 (289)
+.|+ . ...-.+.+.+.+.++++|.+++..
T Consensus 78 V~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gsii~is 133 (241)
T PF13561_consen 78 VNNAGISPPSNVEKPLLDLSEEDWDKTFDINVFSPFLLAQAALPLMKKGGSIINIS 133 (241)
T ss_dssp EEEEESCTGGGTSSSGGGSHHHHHHHHHHHHTHHHHHHHHHHHHHHHHEEEEEEEE
T ss_pred EecccccccccCCCChHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCccccc
Confidence 8762 0 013456667777899999998764
No 489
>PRK07533 enoyl-(acyl carrier protein) reductase; Provisional
Probab=72.65 E-value=17 Score=31.84 Aligned_cols=77 Identities=10% Similarity=-0.057 Sum_probs=49.3
Q ss_pred CCeEEEEcCCCC-hHHHHHHHHC--CCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCC-------cCCC
Q 022962 122 NLKLVDVGTGAG-LPGLVLAIAC--PDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDV-------SFRE 191 (289)
Q Consensus 122 ~~~VLDiGcG~G-~~~l~la~~~--p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~-------~~~~ 191 (289)
+..+|=.|+++| .+|..+|+.+ .+.+|+.+|.+++..+.+++..++.+ .+.++..|+.+...-. ..-+
T Consensus 10 ~k~~lItGas~g~GIG~a~a~~la~~G~~v~l~~r~~~~~~~~~~~~~~~~--~~~~~~~D~~~~~~v~~~~~~~~~~~g 87 (258)
T PRK07533 10 GKRGLVVGIANEQSIAWGCARAFRALGAELAVTYLNDKARPYVEPLAEELD--APIFLPLDVREPGQLEAVFARIAEEWG 87 (258)
T ss_pred CCEEEEECCCCCCcHHHHHHHHHHHcCCEEEEEeCChhhHHHHHHHHHhhc--cceEEecCcCCHHHHHHHHHHHHHHcC
Confidence 678999998873 6788887664 46799999988765444444444433 3456777776532100 0014
Q ss_pred CceEEEEcC
Q 022962 192 QYDVAVARA 200 (289)
Q Consensus 192 ~fD~V~sn~ 200 (289)
..|+++.|+
T Consensus 88 ~ld~lv~nA 96 (258)
T PRK07533 88 RLDFLLHSI 96 (258)
T ss_pred CCCEEEEcC
Confidence 689999884
No 490
>PRK07109 short chain dehydrogenase; Provisional
Probab=72.40 E-value=22 Score=32.68 Aligned_cols=77 Identities=21% Similarity=0.062 Sum_probs=52.9
Q ss_pred CCeEEEEcCCCChHHHHHHHHC--CCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCCc-------CCCC
Q 022962 122 NLKLVDVGTGAGLPGLVLAIAC--PDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDVS-------FREQ 192 (289)
Q Consensus 122 ~~~VLDiGcG~G~~~l~la~~~--p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~~-------~~~~ 192 (289)
+.+||=.|+++| +|..+++.+ .+.+|++++.+++.++...+.++..+. ++.++..|+.+...-.. .-+.
T Consensus 8 ~k~vlITGas~g-IG~~la~~la~~G~~Vvl~~R~~~~l~~~~~~l~~~g~-~~~~v~~Dv~d~~~v~~~~~~~~~~~g~ 85 (334)
T PRK07109 8 RQVVVITGASAG-VGRATARAFARRGAKVVLLARGEEGLEALAAEIRAAGG-EALAVVADVADAEAVQAAADRAEEELGP 85 (334)
T ss_pred CCEEEEECCCCH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHcCC-cEEEEEecCCCHHHHHHHHHHHHHHCCC
Confidence 568888886555 677777653 467999999999887776666666554 57888888876431100 0146
Q ss_pred ceEEEEcC
Q 022962 193 YDVAVARA 200 (289)
Q Consensus 193 fD~V~sn~ 200 (289)
.|+++.|+
T Consensus 86 iD~lInnA 93 (334)
T PRK07109 86 IDTWVNNA 93 (334)
T ss_pred CCEEEECC
Confidence 89999884
No 491
>PLN02662 cinnamyl-alcohol dehydrogenase family protein
Probab=72.39 E-value=11 Score=33.91 Aligned_cols=78 Identities=13% Similarity=0.030 Sum_probs=46.5
Q ss_pred CCeEEEEcCCCChHHHHHHHHC--CCCEEEEEeCChHHHHHHHHHHHHcC-CCCEEEEeccccccCCCCcCCCCceEEEE
Q 022962 122 NLKLVDVGTGAGLPGLVLAIAC--PDWKVTLLESMNKRCVFLEHAVSLTQ-LLNVQIVRGRAETLGKDVSFREQYDVAVA 198 (289)
Q Consensus 122 ~~~VLDiGcG~G~~~l~la~~~--p~~~V~~iD~s~~~l~~a~~~~~~~~-l~ni~~~~~d~~~~~~~~~~~~~fD~V~s 198 (289)
+.+||=.|+ +|++|..++... .+.+|++++.+..............+ ..+++++.+|+.+...-...-..+|.|+.
T Consensus 4 ~~~ilVtGa-tGfIG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~Vih 82 (322)
T PLN02662 4 GKVVCVTGA-SGYIASWLVKLLLQRGYTVKATVRDPNDPKKTEHLLALDGAKERLHLFKANLLEEGSFDSVVDGCEGVFH 82 (322)
T ss_pred CCEEEEECC-hHHHHHHHHHHHHHCCCEEEEEEcCCCchhhHHHHHhccCCCCceEEEeccccCcchHHHHHcCCCEEEE
Confidence 567887775 789998887653 35789988877543322222111112 13688999998764321001135798886
Q ss_pred cC
Q 022962 199 RA 200 (289)
Q Consensus 199 n~ 200 (289)
.+
T Consensus 83 ~A 84 (322)
T PLN02662 83 TA 84 (322)
T ss_pred eC
Confidence 63
No 492
>PRK08643 acetoin reductase; Validated
Probab=72.39 E-value=22 Score=30.78 Aligned_cols=77 Identities=14% Similarity=0.117 Sum_probs=49.8
Q ss_pred CCeEEEEcCCCChHHHHHHHHC--CCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCC-------cCCCC
Q 022962 122 NLKLVDVGTGAGLPGLVLAIAC--PDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDV-------SFREQ 192 (289)
Q Consensus 122 ~~~VLDiGcG~G~~~l~la~~~--p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~-------~~~~~ 192 (289)
+.++|=.|+.+ .+|..+++.+ .+.+|+++|.++..++.+.......+ .++.++..|+.+...-. ..-++
T Consensus 2 ~k~~lItGas~-giG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~ 79 (256)
T PRK08643 2 SKVALVTGAGQ-GIGFAIAKRLVEDGFKVAIVDYNEETAQAAADKLSKDG-GKAIAVKADVSDRDQVFAAVRQVVDTFGD 79 (256)
T ss_pred CCEEEEECCCC-hHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC-CeEEEEECCCCCHHHHHHHHHHHHHHcCC
Confidence 34677778554 4677777553 46799999999877766655555444 25778888887642100 00135
Q ss_pred ceEEEEcC
Q 022962 193 YDVAVARA 200 (289)
Q Consensus 193 fD~V~sn~ 200 (289)
.|.++.++
T Consensus 80 id~vi~~a 87 (256)
T PRK08643 80 LNVVVNNA 87 (256)
T ss_pred CCEEEECC
Confidence 89999874
No 493
>cd08243 quinone_oxidoreductase_like_1 Quinone oxidoreductase (QOR). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=72.37 E-value=25 Score=31.19 Aligned_cols=94 Identities=22% Similarity=0.186 Sum_probs=56.7
Q ss_pred CCCCeEEEEcC--CCChHHHHHHHHCCCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccc-cCCCCcCCCCceEE
Q 022962 120 NSNLKLVDVGT--GAGLPGLVLAIACPDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAET-LGKDVSFREQYDVA 196 (289)
Q Consensus 120 ~~~~~VLDiGc--G~G~~~l~la~~~p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~-~~~~~~~~~~fD~V 196 (289)
.++.+||=.|+ +.|..++.+|+.. +.+|++++.+++..+.++ .+|.+.+-....+..+ +.. ....+|+|
T Consensus 141 ~~g~~vlV~ga~g~~g~~~~~~a~~~-g~~v~~~~~~~~~~~~~~----~~g~~~~~~~~~~~~~~i~~---~~~~~d~v 212 (320)
T cd08243 141 QPGDTLLIRGGTSSVGLAALKLAKAL-GATVTATTRSPERAALLK----ELGADEVVIDDGAIAEQLRA---APGGFDKV 212 (320)
T ss_pred CCCCEEEEEcCCChHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHH----hcCCcEEEecCccHHHHHHH---hCCCceEE
Confidence 34778888886 4555556667665 578999999887665553 3555322111111111 111 12569999
Q ss_pred EEcCcccHHHHHHHHccccccCeEEEEE
Q 022962 197 VARAVAEMRILAEYCLPLVRVGGLFVAA 224 (289)
Q Consensus 197 ~sn~~~~~~~ll~~~~~~LkpgG~l~~~ 224 (289)
+...-. ..+..+.+.|+++|+++..
T Consensus 213 l~~~~~---~~~~~~~~~l~~~g~~v~~ 237 (320)
T cd08243 213 LELVGT---ATLKDSLRHLRPGGIVCMT 237 (320)
T ss_pred EECCCh---HHHHHHHHHhccCCEEEEE
Confidence 965332 3567777899999998753
No 494
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=72.28 E-value=27 Score=31.41 Aligned_cols=100 Identities=14% Similarity=0.136 Sum_probs=56.7
Q ss_pred eEEEEcCCCChHHHHHHHH--CCCCEEEEEeCChHHHHHHHHHHHHc---C--------------CCCEEEEeccccccC
Q 022962 124 KLVDVGTGAGLPGLVLAIA--CPDWKVTLLESMNKRCVFLEHAVSLT---Q--------------LLNVQIVRGRAETLG 184 (289)
Q Consensus 124 ~VLDiGcG~G~~~l~la~~--~p~~~V~~iD~s~~~l~~a~~~~~~~---~--------------l~ni~~~~~d~~~~~ 184 (289)
+|.=||+| .+|..+|.. ..+.+|+.+|.+++.++.+.+..... + +.++++. .++.+..
T Consensus 3 ~V~VIG~G--~mG~~iA~~la~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~-~~~~~~~ 79 (288)
T PRK09260 3 KLVVVGAG--VMGRGIAYVFAVSGFQTTLVDIKQEQLESAQQEIASIFEQGVARGKLTEAARQAALARLSYS-LDLKAAV 79 (288)
T ss_pred EEEEECcc--HHHHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEe-CcHHHhh
Confidence 46666764 555555443 23678999999999998876543221 1 0123322 2332211
Q ss_pred CCCcCCCCceEEEEcCccc---HHHHHHHHccccccCeEEEEEEcCCcHHH
Q 022962 185 KDVSFREQYDVAVARAVAE---MRILAEYCLPLVRVGGLFVAAKGHDPQEE 232 (289)
Q Consensus 185 ~~~~~~~~fD~V~sn~~~~---~~~ll~~~~~~LkpgG~l~~~~g~~~~~e 232 (289)
...|+|+..-..+ ...++.++.+.++++..++...+.-...+
T Consensus 80 ------~~aD~Vi~avpe~~~~k~~~~~~l~~~~~~~~il~~~tSt~~~~~ 124 (288)
T PRK09260 80 ------ADADLVIEAVPEKLELKKAVFETADAHAPAECYIATNTSTMSPTE 124 (288)
T ss_pred ------cCCCEEEEeccCCHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHHH
Confidence 3579999653333 34667777788888776654444333333
No 495
>PRK08251 short chain dehydrogenase; Provisional
Probab=72.28 E-value=23 Score=30.42 Aligned_cols=78 Identities=13% Similarity=0.041 Sum_probs=50.7
Q ss_pred CCeEEEEcCCCChHHHHHHHHC--CCCEEEEEeCChHHHHHHHHHHHHcC-CCCEEEEeccccccCCCC-------cCCC
Q 022962 122 NLKLVDVGTGAGLPGLVLAIAC--PDWKVTLLESMNKRCVFLEHAVSLTQ-LLNVQIVRGRAETLGKDV-------SFRE 191 (289)
Q Consensus 122 ~~~VLDiGcG~G~~~l~la~~~--p~~~V~~iD~s~~~l~~a~~~~~~~~-l~ni~~~~~d~~~~~~~~-------~~~~ 191 (289)
+.++|=.|+ +|.+|..+++.+ .+.+|+.++.++...+.......... -.++.++..|+.+...-. ..-+
T Consensus 2 ~k~vlItGa-s~giG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 80 (248)
T PRK08251 2 RQKILITGA-SSGLGAGMAREFAAKGRDLALCARRTDRLEELKAELLARYPGIKVAVAALDVNDHDQVFEVFAEFRDELG 80 (248)
T ss_pred CCEEEEECC-CCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhhCCCceEEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence 457888885 566788877654 35799999999887766555443321 225888888888643100 0013
Q ss_pred CceEEEEcC
Q 022962 192 QYDVAVARA 200 (289)
Q Consensus 192 ~fD~V~sn~ 200 (289)
..|.|+.|+
T Consensus 81 ~id~vi~~a 89 (248)
T PRK08251 81 GLDRVIVNA 89 (248)
T ss_pred CCCEEEECC
Confidence 589999884
No 496
>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E.coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=72.24 E-value=12 Score=32.97 Aligned_cols=77 Identities=18% Similarity=0.082 Sum_probs=41.8
Q ss_pred CCeEEEEcCC-CChHHHH-HHHHCCCCEEEEEeCCh-------------------HHHHHHHHHHHHcCCC-CEEEEecc
Q 022962 122 NLKLVDVGTG-AGLPGLV-LAIACPDWKVTLLESMN-------------------KRCVFLEHAVSLTQLL-NVQIVRGR 179 (289)
Q Consensus 122 ~~~VLDiGcG-~G~~~l~-la~~~p~~~V~~iD~s~-------------------~~l~~a~~~~~~~~l~-ni~~~~~d 179 (289)
..+|+=+||| .|..... |++ ..-.+++.+|.+. ...+.+.+.+.+.... +|+.+...
T Consensus 11 ~~~VlVvG~GGvGs~va~~Lar-~GVg~i~LvD~D~V~~sNlnRq~~~~~~diG~~Kae~~~~~l~~inP~~~V~~~~~~ 89 (231)
T cd00755 11 NAHVAVVGLGGVGSWAAEALAR-SGVGKLTLIDFDVVCVSNLNRQIHALLSTVGKPKVEVMAERIRDINPECEVDAVEEF 89 (231)
T ss_pred CCCEEEECCCHHHHHHHHHHHH-cCCCEEEEECCCEECchhhcchhCcChhhCCCcHHHHHHHHHHHHCCCcEEEEeeee
Confidence 5689999998 4443333 333 3457999999663 2444455555554432 35555444
Q ss_pred ccccCCCCcCCCCceEEEEc
Q 022962 180 AETLGKDVSFREQYDVAVAR 199 (289)
Q Consensus 180 ~~~~~~~~~~~~~fD~V~sn 199 (289)
+..-.....+...||+|+.-
T Consensus 90 i~~~~~~~l~~~~~D~Vvda 109 (231)
T cd00755 90 LTPDNSEDLLGGDPDFVVDA 109 (231)
T ss_pred cCHhHHHHHhcCCCCEEEEc
Confidence 43111110122469998865
No 497
>PRK06113 7-alpha-hydroxysteroid dehydrogenase; Validated
Probab=72.22 E-value=24 Score=30.64 Aligned_cols=77 Identities=17% Similarity=0.083 Sum_probs=50.0
Q ss_pred CCeEEEEcCCCChHHHHHHHHC--CCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCC-------cCCCC
Q 022962 122 NLKLVDVGTGAGLPGLVLAIAC--PDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDV-------SFREQ 192 (289)
Q Consensus 122 ~~~VLDiGcG~G~~~l~la~~~--p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~-------~~~~~ 192 (289)
+.+||=.|+++| +|..+++.+ .+.+|+.++.+......+....+..+. ++.++..|+.+...-. ..-+.
T Consensus 11 ~k~vlVtG~s~g-IG~~la~~l~~~G~~vv~~~r~~~~~~~~~~~l~~~~~-~~~~~~~D~~~~~~i~~~~~~~~~~~~~ 88 (255)
T PRK06113 11 GKCAIITGAGAG-IGKEIAITFATAGASVVVSDINADAANHVVDEIQQLGG-QAFACRCDITSEQELSALADFALSKLGK 88 (255)
T ss_pred CCEEEEECCCch-HHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhcCC-cEEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence 679999996655 577776543 467899999988776655544444332 5777888887543100 00136
Q ss_pred ceEEEEcC
Q 022962 193 YDVAVARA 200 (289)
Q Consensus 193 fD~V~sn~ 200 (289)
+|.++.++
T Consensus 89 ~d~li~~a 96 (255)
T PRK06113 89 VDILVNNA 96 (255)
T ss_pred CCEEEECC
Confidence 79999874
No 498
>cd05298 GH4_GlvA_pagL_like Glycoside Hydrolases Family 4; GlvA- and pagL-like glycosidases. Bacillus subtilis GlvA and Clostridium acetobutylicum pagL are 6-phospho-alpha-glucosidase, catalyzing the hydrolysis of alpha-glucopyranoside bonds to release glucose from oligosaccharides. The substrate specificities of other members of this subgroup are unknown. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP_PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases, which include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. Members of this subfamily are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductas
Probab=72.02 E-value=28 Score=33.65 Aligned_cols=68 Identities=16% Similarity=0.089 Sum_probs=41.8
Q ss_pred eEEEEcCCCChHHHHHHH-------HCCCCEEEEEeCChHHHHH----HHHHHHHcCCCCEEEEe-ccccccCCCCcCCC
Q 022962 124 KLVDVGTGAGLPGLVLAI-------ACPDWKVTLLESMNKRCVF----LEHAVSLTQLLNVQIVR-GRAETLGKDVSFRE 191 (289)
Q Consensus 124 ~VLDiGcG~G~~~l~la~-------~~p~~~V~~iD~s~~~l~~----a~~~~~~~~l~ni~~~~-~d~~~~~~~~~~~~ 191 (289)
+|.=||.||. .+..+.. ..+..+|+.+|++++.++. +++.+++.|. .+++.. .|..+.- .
T Consensus 2 KI~iIGaGS~-~tp~li~~l~~~~~~l~~~ei~L~DId~~rl~~v~~l~~~~~~~~g~-~~~v~~Ttdr~eAl------~ 73 (437)
T cd05298 2 KIVIAGGGST-YTPGIVKSLLDRKEDFPLRELVLYDIDAERQEKVAEAVKILFKENYP-EIKFVYTTDPEEAF------T 73 (437)
T ss_pred eEEEECCcHH-HHHHHHHHHHhCcccCCCCEEEEECCCHHHHHHHHHHHHHHHHhhCC-CeEEEEECCHHHHh------C
Confidence 4667899996 5544321 2456899999999987776 4455556665 344432 2333321 2
Q ss_pred CceEEEEc
Q 022962 192 QYDVAVAR 199 (289)
Q Consensus 192 ~fD~V~sn 199 (289)
..|+|++.
T Consensus 74 gADfVi~~ 81 (437)
T cd05298 74 DADFVFAQ 81 (437)
T ss_pred CCCEEEEE
Confidence 36888875
No 499
>PRK08416 7-alpha-hydroxysteroid dehydrogenase; Provisional
Probab=71.75 E-value=26 Score=30.55 Aligned_cols=77 Identities=10% Similarity=0.006 Sum_probs=46.9
Q ss_pred CCeEEEEcCCCChHHHHHHHHC--CCCEEEEEe-CChHHHHHHHHHHHH-cCCCCEEEEeccccccCCC-------CcCC
Q 022962 122 NLKLVDVGTGAGLPGLVLAIAC--PDWKVTLLE-SMNKRCVFLEHAVSL-TQLLNVQIVRGRAETLGKD-------VSFR 190 (289)
Q Consensus 122 ~~~VLDiGcG~G~~~l~la~~~--p~~~V~~iD-~s~~~l~~a~~~~~~-~~l~ni~~~~~d~~~~~~~-------~~~~ 190 (289)
+.++|=.|+++| +|..+|+.+ .+.+|+.+. .+++.++...+..+. .+ .++.++..|+.+...- ...-
T Consensus 8 ~k~vlItGas~g-IG~~ia~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~D~~~~~~~~~~~~~~~~~~ 85 (260)
T PRK08416 8 GKTLVISGGTRG-IGKAIVYEFAQSGVNIAFTYNSNVEEANKIAEDLEQKYG-IKAKAYPLNILEPETYKELFKKIDEDF 85 (260)
T ss_pred CCEEEEeCCCch-HHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHHhcC-CceEEEEcCCCCHHHHHHHHHHHHHhc
Confidence 678998898776 477777654 467888875 455554443333332 23 2578888888764210 0001
Q ss_pred CCceEEEEcC
Q 022962 191 EQYDVAVARA 200 (289)
Q Consensus 191 ~~fD~V~sn~ 200 (289)
+.+|+++.|+
T Consensus 86 g~id~lv~nA 95 (260)
T PRK08416 86 DRVDFFISNA 95 (260)
T ss_pred CCccEEEECc
Confidence 4689999875
No 500
>PRK05876 short chain dehydrogenase; Provisional
Probab=71.71 E-value=21 Score=31.68 Aligned_cols=77 Identities=16% Similarity=0.067 Sum_probs=50.6
Q ss_pred CCeEEEEcCCCChHHHHHHHHC--CCCEEEEEeCChHHHHHHHHHHHHcCCCCEEEEeccccccCCCC-------cCCCC
Q 022962 122 NLKLVDVGTGAGLPGLVLAIAC--PDWKVTLLESMNKRCVFLEHAVSLTQLLNVQIVRGRAETLGKDV-------SFREQ 192 (289)
Q Consensus 122 ~~~VLDiGcG~G~~~l~la~~~--p~~~V~~iD~s~~~l~~a~~~~~~~~l~ni~~~~~d~~~~~~~~-------~~~~~ 192 (289)
+.++|=.|+++| +|..+|+.+ .+.+|+.+|.++..++.+.+..+..+. ++.++..|+.+...-. ..-+.
T Consensus 6 ~k~vlVTGas~g-IG~ala~~La~~G~~Vv~~~r~~~~l~~~~~~l~~~~~-~~~~~~~Dv~d~~~v~~~~~~~~~~~g~ 83 (275)
T PRK05876 6 GRGAVITGGASG-IGLATGTEFARRGARVVLGDVDKPGLRQAVNHLRAEGF-DVHGVMCDVRHREEVTHLADEAFRLLGH 83 (275)
T ss_pred CCEEEEeCCCch-HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCC-eEEEEeCCCCCHHHHHHHHHHHHHHcCC
Confidence 668998888765 577777653 467999999998776655444444443 5778888887642110 00135
Q ss_pred ceEEEEcC
Q 022962 193 YDVAVARA 200 (289)
Q Consensus 193 fD~V~sn~ 200 (289)
.|+++.|+
T Consensus 84 id~li~nA 91 (275)
T PRK05876 84 VDVVFSNA 91 (275)
T ss_pred CCEEEECC
Confidence 79999884
Done!