BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 022963
(289 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3PJA|J Chain J, Crystal Structure Of Human C3po Complex
pdb|3PJA|K Chain K, Crystal Structure Of Human C3po Complex
pdb|3PJA|L Chain L, Crystal Structure Of Human C3po Complex
pdb|3QB5|K Chain K, Human C3po Complex In The Presence Of Mnso4
Length = 290
Score = 129 bits (324), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 80/235 (34%), Positives = 133/235 (56%), Gaps = 27/235 (11%)
Query: 56 AFANYAGYLNELNEKRERVVKSSRDITINSKKVIFQVHRI-SRDNKEEVLKKAEADLEAV 114
AF ++ L+ ++K ER+VK SRDIT+ SK+ IF +HRI S + E++L ++E L+ V
Sbjct: 38 AFKSFQQELDARHDKYERLVKLSRDITVESKRTIFLLHRITSAPDMEDILTESEIKLDGV 97
Query: 115 KDQYISRLVKELQGTDFWKLRRAYSPGVQEYVEAATFCKFCRTGTXXXXXXXXXXXXXXS 174
+ Q I ++ +EL G D + RA + G+QEYVEA +F F +T + +
Sbjct: 98 R-QKIFQVAQELSGEDMHQFHRAITTGLQEYVEAVSFQHFIKTRSLISMDEINKQLIFTT 156
Query: 175 D--------PAIEP---------LQINVFDYLLGLADLTGELMRLAIGRISDGELEFAEK 217
+ P+ + L++ DYLLG+ADLTGELMR+ I + +G+++ +
Sbjct: 157 EDNGKENKTPSSDAQDKQFGTWRLRVTPVDYLLGVADLTGELMRMCINSVGNGDIDTPFE 216
Query: 218 ICRFSRDIYRELTLVVPLMDNNS---DMKTKMDTMLQSVLKIENACLSVHVRGSE 269
+ +F R +Y + + N+ ++ K+ T+ QS+ K+ENAC ++ VRGSE
Sbjct: 217 VSQFLRQVYDGFSFI-----GNTGPYEVSKKLYTLKQSLAKVENACYALKVRGSE 266
>pdb|3AXJ|B Chain B, High Resolution Crystal Structure Of C3po
Length = 298
Score = 104 bits (260), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 82/282 (29%), Positives = 129/282 (45%), Gaps = 40/282 (14%)
Query: 33 SGTALQSIAKRPRTITTESYMKDA--FANYAGYLNEL---NEKRERVVKSSRDITINSKK 87
G ++ A R R I +D+ + Y NEL +++ ER+VK SRDITI SK+
Sbjct: 5 GGAGHRNTAPRKRQIPAAQLDEDSPIVQQFRIYSNELIXKHDRHERIVKLSRDITIESKR 64
Query: 88 VIFQVHRIS--RDNKEEVLKKAEADLEAVKDQYISRLVKELQGTDFWKLRRAYSPGVQEY 145
+IF +H I + NKE+VL++A L + + EL+ D ++ R +YSPG+QE+
Sbjct: 65 IIFLLHSIDSRKQNKEKVLEEARQRLNKLIAVNFRAVALELRDQDVYQFRSSYSPGLQEF 124
Query: 146 VEAATFCKF-CR-----------TGTXXXXXXXXXXXXXXSDPAIEPLQ----------- 182
++A T+ ++ C S P EP +
Sbjct: 125 IQAYTYXEYLCHEDAEGENETKSVSDWQAIQAVXQYVEESSQPKEEPTEGEDVQAIAQVE 184
Query: 183 --------INVFDYLLGLADLTGELMRLAIGRISDGELEFAEKICRFSRDIYRELTLVVP 234
++ +Y+LGL+DLTGEL R I + G+ + C+ + Y +
Sbjct: 185 SPKKFQFFVDPTEYILGLSDLTGELXRRCINSLGSGDTDTCLDTCKALQHFYS--GYISL 242
Query: 235 LMDNNSDMKTKMDTMLQSVLKIENACLSVHVRGSEYTLLGSS 276
++ K+ T QSVLK EN C +V VRG E G++
Sbjct: 243 NCQRARELWRKITTXKQSVLKAENVCYNVKVRGGEAAKWGAT 284
>pdb|3RIU|C Chain C, Crystal Structure Of Drosophila Hexameric C3po Formed By
Truncated Translin And Trax
Length = 269
Score = 103 bits (257), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 77/250 (30%), Positives = 118/250 (47%), Gaps = 38/250 (15%)
Query: 63 YLNEL---NEKRERVVKSSRDITINSKKVIFQVHRIS--RDNKEEVLKKAEADLEAVKDQ 117
Y NEL +++ ER+VK SRDITI SK++IF +H I + NKE+VL++A L +
Sbjct: 8 YSNELIXKHDRHERIVKLSRDITIESKRIIFLLHSIDSRKQNKEKVLEEARQRLNKLIAV 67
Query: 118 YISRLVKELQGTDFWKLRRAYSPGVQEYVEAATFCKF-CR-----------TGTXXXXXX 165
+ EL+ D ++ R +YSPG+QE++EA T+ ++ C
Sbjct: 68 NFRAVALELRDQDVYQFRSSYSPGLQEFIEAYTYXEYLCHEDAEGENETKSVSDWQAIQA 127
Query: 166 XXXXXXXXSDPAIEPLQ-------------------INVFDYLLGLADLTGELMRLAIGR 206
S P EP + ++ +Y+LGL+DLTGEL R I
Sbjct: 128 VXQYVEESSQPKEEPTEGEDVQAIAQVESPKKFQFFVDPTEYILGLSDLTGELXRRCINS 187
Query: 207 ISDGELEFAEKICRFSRDIYRELTLVVPLMDNNSDMKTKMDTMLQSVLKIENACLSVHVR 266
+ G+ + C+ + Y + ++ K+ T QSVLK EN C +V VR
Sbjct: 188 LGSGDTDTCLDTCKALQHFYS--GYISLNCQRARELWRKITTXKQSVLKAENVCYNVKVR 245
Query: 267 GSEYTLLGSS 276
G E G++
Sbjct: 246 GGEAAKWGAT 255
>pdb|3AXJ|A Chain A, High Resolution Crystal Structure Of C3po
Length = 249
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 60/226 (26%), Positives = 91/226 (40%), Gaps = 29/226 (12%)
Query: 55 DAFANYAGYLNELNEKRERVVKSSRDITINSKKVIFQVHRISRDNKEEV----LKKAEAD 110
D F+NY Y++ E RE + R+I SK+ ++ I D + L + + +
Sbjct: 22 DIFSNYQKYIDNEQEVRENIRIVVREIEHLSKEAQIKLQIIHSDLSQISAACGLARKQVE 81
Query: 111 LEAVKDQYISRLVKELQG---TDFWKL---RRAYSPGVQEYVEAATFCKFCRTGTXXXXX 164
L A K Q ++ LV Q +D W R + + Y+EA T
Sbjct: 82 LCAQKYQKLAELVPAGQYYRYSDHWTFITQRLIFIIALVIYLEAGFLV------TRETVA 135
Query: 165 XXXXXXXXXSDPAIEPLQINVFDYLLGLADLTGELMRLAIGRISDGELEFAEKICRFSRD 224
S E ++V DYLLG+ L EL R A ++ G+ E I F D
Sbjct: 136 EXLGLKISQS----EGFHLDVEDYLLGILQLASELSRFATNSVTXGDYERPLNISHFIGD 191
Query: 225 I---YRELTLVVPLMDNNSDMKTKMDTMLQSVLKIENACLSVHVRG 267
+ +R L L N ++ + D + V KIE V +RG
Sbjct: 192 LNTGFRLLNL------KNDGLRKRFDALKYDVKKIEEVVYDVSIRG 231
>pdb|2QRX|A Chain A, Crystal Structure Of Drosophila Melanogaster Translin
Protein
Length = 235
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 59/226 (26%), Positives = 91/226 (40%), Gaps = 29/226 (12%)
Query: 55 DAFANYAGYLNELNEKRERVVKSSRDITINSKKVIFQVHRISRDNKEEV----LKKAEAD 110
D F+NY Y++ E RE + R+I SK+ ++ I D + L + + +
Sbjct: 8 DIFSNYQKYIDNEQEVRENIRIVVREIEHLSKEAQIKLQIIHSDLSQISAACGLARKQVE 67
Query: 111 LEAVKDQYISRLVKELQG---TDFWKL---RRAYSPGVQEYVEAATFCKFCRTGTXXXXX 164
L A K Q ++ LV Q +D W R + + Y+EA T
Sbjct: 68 LCAQKYQKLAELVPAGQYYRYSDHWTFITQRLIFIIALVIYLEAGFLV------TRETVA 121
Query: 165 XXXXXXXXXSDPAIEPLQINVFDYLLGLADLTGELMRLAIGRISDGELEFAEKICRFSRD 224
S E ++V DYLLG+ L EL R A ++ G+ E + I F D
Sbjct: 122 EMLGLKISQS----EGFHLDVEDYLLGILQLASELSRFATNSVTMGDYERSLNISHFIGD 177
Query: 225 I---YRELTLVVPLMDNNSDMKTKMDTMLQSVLKIENACLSVHVRG 267
+ +R L L N ++ + D + V KIE V +RG
Sbjct: 178 LNTGFRLLNL------KNDGLRKRFDALKYDVKKIEEVVYDVSIRG 217
>pdb|2QVA|A Chain A, Crystal Structure Of Drosophila Melanogaster Translin
Protein
pdb|2QVA|B Chain B, Crystal Structure Of Drosophila Melanogaster Translin
Protein
pdb|2QVA|C Chain C, Crystal Structure Of Drosophila Melanogaster Translin
Protein
pdb|2QVA|D Chain D, Crystal Structure Of Drosophila Melanogaster Translin
Protein
Length = 247
Score = 48.9 bits (115), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 59/226 (26%), Positives = 91/226 (40%), Gaps = 29/226 (12%)
Query: 55 DAFANYAGYLNELNEKRERVVKSSRDITINSKKVIFQVHRISRDNKEEV----LKKAEAD 110
D F+NY Y++ E RE + R+I SK+ ++ I D + L + + +
Sbjct: 20 DIFSNYQKYIDNEQEVRENIRIVVREIEHLSKEAQIKLQIIHSDLSQISAACGLARKQVE 79
Query: 111 LEAVKDQYISRLVKELQG---TDFWKL---RRAYSPGVQEYVEAATFCKFCRTGTXXXXX 164
L A K Q ++ LV Q +D W R + + Y+EA T
Sbjct: 80 LCAQKYQKLAELVPAGQYYRYSDHWTFITQRLIFIIALVIYLEAGFLV------TRETVA 133
Query: 165 XXXXXXXXXSDPAIEPLQINVFDYLLGLADLTGELMRLAIGRISDGELEFAEKICRFSRD 224
S E ++V DYLLG+ L EL R A ++ G+ E + I F D
Sbjct: 134 EMLGLKISQS----EGFHLDVEDYLLGILQLASELSRFATNSVTMGDYERSLNISHFIGD 189
Query: 225 I---YRELTLVVPLMDNNSDMKTKMDTMLQSVLKIENACLSVHVRG 267
+ +R L L N ++ + D + V KIE V +RG
Sbjct: 190 LNTGFRLLNL------KNDGLRKRFDALKYDVKKIEEVVYDVSIRG 229
>pdb|4DG7|A Chain A, Low Resolution Structure Of Drosophila Translin
pdb|4DG7|B Chain B, Low Resolution Structure Of Drosophila Translin
pdb|4DG7|C Chain C, Low Resolution Structure Of Drosophila Translin
pdb|4DG7|D Chain D, Low Resolution Structure Of Drosophila Translin
pdb|4DG7|E Chain E, Low Resolution Structure Of Drosophila Translin
pdb|4DG7|F Chain F, Low Resolution Structure Of Drosophila Translin
pdb|4DG7|G Chain G, Low Resolution Structure Of Drosophila Translin
pdb|4DG7|H Chain H, Low Resolution Structure Of Drosophila Translin
Length = 255
Score = 48.9 bits (115), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 61/238 (25%), Positives = 95/238 (39%), Gaps = 30/238 (12%)
Query: 44 PRTITTESYMK-DAFANYAGYLNELNEKRERVVKSSRDITINSKKVIFQVHRISRDNKEE 102
PR +++ D F+NY Y++ E RE + R+I SK+ ++ I D +
Sbjct: 16 PRGSHMSNFVNLDIFSNYQKYIDNEQEVRENIRIVVREIEHLSKEAQIKLQIIHSDLSQI 75
Query: 103 V----LKKAEADLEAVKDQYISRLVKELQG---TDFWKL---RRAYSPGVQEYVEAATFC 152
L + + +L A K Q ++ LV Q +D W R + + Y+EA
Sbjct: 76 SAACGLARKQVELCAQKYQKLAELVPAGQYYRYSDHWTFITQRLIFIIALVIYLEAGFLV 135
Query: 153 KFCRTGTXXXXXXXXXXXXXXSDPAIEPLQINVFDYLLGLADLTGELMRLAIGRISDGEL 212
T S E ++V DYLLG+ L EL R A ++ G+
Sbjct: 136 ------TRETVAEMLGLKISQS----EGFHLDVEDYLLGILQLASELSRFATNSVTMGDY 185
Query: 213 EFAEKICRFSRDI---YRELTLVVPLMDNNSDMKTKMDTMLQSVLKIENACLSVHVRG 267
E I F D+ +R L L N ++ + D + V KIE V +RG
Sbjct: 186 ERPLNISHFIGDLNTGFRLLNL------KNDGLRKRFDALKYDVKKIEEVVYDVSIRG 237
>pdb|3RIU|A Chain A, Crystal Structure Of Drosophila Hexameric C3po Formed By
Truncated Translin And Trax
pdb|3RIU|B Chain B, Crystal Structure Of Drosophila Hexameric C3po Formed By
Truncated Translin And Trax
Length = 218
Score = 48.5 bits (114), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 60/226 (26%), Positives = 91/226 (40%), Gaps = 29/226 (12%)
Query: 55 DAFANYAGYLNELNEKRERVVKSSRDITINSKKVIFQVHRISRDNKEEV----LKKAEAD 110
D F+NY Y++ E RE + R+I SK+ ++ I D + L + + +
Sbjct: 9 DIFSNYQKYIDNEQEVRENIRIVVREIEHLSKEAQIKLQIIHSDLSQISAACGLARKQVE 68
Query: 111 LEAVKDQYISRLVKELQG---TDFWKL---RRAYSPGVQEYVEAATFCKFCRTGTXXXXX 164
L A K Q ++ LV Q +D W R + + Y+EA T
Sbjct: 69 LCAQKYQKLAELVPAGQYYRYSDHWTFITQRLIFIIALVIYLEAGFLV------TRETVA 122
Query: 165 XXXXXXXXXSDPAIEPLQINVFDYLLGLADLTGELMRLAIGRISDGELEFAEKICRFSRD 224
S E ++V DYLLG+ L EL R A ++ G+ E I F D
Sbjct: 123 EXLGLKISQS----EGFHLDVEDYLLGILQLASELSRFATNSVTXGDYERPLNISHFIGD 178
Query: 225 I---YRELTLVVPLMDNNSDMKTKMDTMLQSVLKIENACLSVHVRG 267
+ +R L L N ++ + D + V KIE V +RG
Sbjct: 179 LNTGFRLLNL------KNDGLRKRFDALKYDVKKIEEVVYDVSIRG 218
>pdb|3ZC1|A Chain A, Crystal Structure Of Afc3po
pdb|3ZC1|B Chain B, Crystal Structure Of Afc3po
pdb|3ZC1|C Chain C, Crystal Structure Of Afc3po
pdb|3ZC1|D Chain D, Crystal Structure Of Afc3po
pdb|3ZC1|E Chain E, Crystal Structure Of Afc3po
pdb|3ZC1|F Chain F, Crystal Structure Of Afc3po
pdb|3ZC1|G Chain G, Crystal Structure Of Afc3po
pdb|3ZC1|H Chain H, Crystal Structure Of Afc3po
Length = 199
Score = 36.6 bits (83), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 47/174 (27%), Positives = 71/174 (40%), Gaps = 27/174 (15%)
Query: 76 KSSRDITINSKKVIFQVHRISRDNKEEVLKKAEADLEAVKDQYISRLVKELQGTDFWKLR 135
K R++ I+S K I +H + E+ LKKA LE VK +E F+
Sbjct: 25 KVLREMRIHSTKSIALIHAGKVEEAEQELKKAIELLEKVK------AYREYPEIYFYLCN 78
Query: 136 RAYSPGVQEYVEAATFCKFCRTGTXXXXXXXXXXXXXXSDPAIEPLQINVFDYLLGLADL 195
A +QE VEA F K +G L++ +L G AD
Sbjct: 79 DA----MQELVEAIAF-KNAISGEFTFEI---------------DLEVTPAAFLNGFADA 118
Query: 196 TGELMRLAIGRISDGELEFAEKICRFSRDIYRELTLVVPLMDN-NSDMKTKMDT 248
GEL R A+ ++ +G+ + AE++ IY L D S ++ K+D
Sbjct: 119 VGELRRYALTKLIEGDFKSAERMLEVMEKIYERLMEFTTFPDKLVSGLRKKLDV 172
>pdb|3ZC0|A Chain A, Structure Of Afc3po - Duplex Rna Complex
pdb|3ZC0|B Chain B, Structure Of Afc3po - Duplex Rna Complex
pdb|3ZC0|C Chain C, Structure Of Afc3po - Duplex Rna Complex
pdb|3ZC0|D Chain D, Structure Of Afc3po - Duplex Rna Complex
pdb|3ZC0|E Chain E, Structure Of Afc3po - Duplex Rna Complex
pdb|3ZC0|F Chain F, Structure Of Afc3po - Duplex Rna Complex
pdb|3ZC0|G Chain G, Structure Of Afc3po - Duplex Rna Complex
pdb|3ZC0|H Chain H, Structure Of Afc3po - Duplex Rna Complex
pdb|3ZC0|I Chain I, Structure Of Afc3po - Duplex Rna Complex
pdb|3ZC0|J Chain J, Structure Of Afc3po - Duplex Rna Complex
pdb|3ZC0|K Chain K, Structure Of Afc3po - Duplex Rna Complex
pdb|3ZC0|L Chain L, Structure Of Afc3po - Duplex Rna Complex
Length = 199
Score = 33.5 bits (75), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 46/174 (26%), Positives = 70/174 (40%), Gaps = 27/174 (15%)
Query: 76 KSSRDITINSKKVIFQVHRISRDNKEEVLKKAEADLEAVKDQYISRLVKELQGTDFWKLR 135
K R++ I+S K I +H + E+ LKKA LE VK +E F+
Sbjct: 25 KVLREMRIHSTKSIALIHAGKVEEAEQELKKAIELLEKVKA------YREYPEIYFYLCN 78
Query: 136 RAYSPGVQEYVEAATFCKFCRTGTXXXXXXXXXXXXXXSDPAIEPLQINVFDYLLGLADL 195
A +QE VEA F K +G L++ +L G A
Sbjct: 79 DA----MQELVEAIAF-KNAISGEFTFEI---------------DLEVTPAAFLNGFAAA 118
Query: 196 TGELMRLAIGRISDGELEFAEKICRFSRDIYRELTLVVPLMDN-NSDMKTKMDT 248
GEL R A+ ++ +G+ + AE++ IY L D S ++ K+D
Sbjct: 119 VGELRRYALTKLIEGDFKSAERMLEVMEKIYERLMEFTTFPDKLVSGLRKKLDV 172
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.133 0.373
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,927,100
Number of Sequences: 62578
Number of extensions: 240557
Number of successful extensions: 754
Number of sequences better than 100.0: 31
Number of HSP's better than 100.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 694
Number of HSP's gapped (non-prelim): 55
length of query: 289
length of database: 14,973,337
effective HSP length: 98
effective length of query: 191
effective length of database: 8,840,693
effective search space: 1688572363
effective search space used: 1688572363
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.3 bits)