Query 022963
Match_columns 289
No_of_seqs 122 out of 415
Neff 6.0
Searched_HMMs 29240
Date Mon Mar 25 14:04:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022963.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/022963hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3qb5_K Translin-associated pro 100.0 8.9E-68 3E-72 492.9 24.2 230 44-277 26-274 (290)
2 3axj_B TRAX, translin associat 100.0 2.4E-66 8.1E-71 484.9 21.4 230 45-276 22-284 (298)
3 3axj_A GM27569P, translin; tra 100.0 7.8E-65 2.7E-69 464.0 22.5 224 50-279 17-242 (249)
4 1j1j_A Translin; testis/brain 100.0 1.6E-64 5.5E-69 459.8 22.8 215 50-269 12-230 (240)
5 3lf9_A 4E10_D0_1IS1A_001_C (T1 48.5 1E+02 0.0035 24.6 8.8 59 68-126 35-103 (121)
6 3hnw_A Uncharacterized protein 47.3 67 0.0023 26.0 7.4 66 185-264 26-95 (138)
7 1is1_A Ribosome recycling fact 42.7 1.1E+02 0.0039 25.9 8.5 101 24-124 46-173 (185)
8 3lhp_S 4E10_D0_1ISEA_004_N (T9 42.3 1.1E+02 0.0039 24.4 7.8 72 54-125 21-112 (123)
9 1wqg_A Ribosome recycling fact 42.2 1.2E+02 0.004 25.8 8.5 101 24-124 46-173 (185)
10 1ge9_A Ribosome recycling fact 41.6 1.6E+02 0.0055 24.9 10.9 102 24-125 49-173 (184)
11 1dd5_A Ribosome recycling fact 39.2 1.1E+02 0.0038 25.9 7.9 101 24-124 46-173 (185)
12 2qyw_A Vesicle transport throu 39.2 1.2E+02 0.0042 22.9 7.9 80 51-145 11-90 (102)
13 1gak_A SP18, fertilization pro 38.8 18 0.0006 29.3 2.5 27 69-95 51-77 (141)
14 1ise_A Ribosome recycling fact 38.8 1.2E+02 0.004 25.8 7.9 101 24-124 46-173 (185)
15 4gfq_A Ribosome-recycling fact 37.3 1.2E+02 0.0041 26.3 7.9 102 24-125 70-198 (209)
16 2kw0_A CCMH protein; oxidoredu 35.7 23 0.00077 26.9 2.6 42 194-237 40-81 (90)
17 1eh1_A Ribosome recycling fact 30.5 1.2E+02 0.0042 25.7 6.7 56 69-124 109-174 (185)
18 2hl7_A Cytochrome C-type bioge 29.7 29 0.00098 26.0 2.3 41 194-236 43-83 (84)
19 3qf7_D MRE11; ABC-ATPase, ATPa 23.3 1.1E+02 0.0038 20.1 3.9 34 55-88 8-41 (50)
No 1
>3qb5_K Translin-associated protein X; alpha helical bundle, ribonuclease, hydrolase; 2.95A {Homo sapiens} PDB: 3pja_J
Probab=100.00 E-value=8.9e-68 Score=492.92 Aligned_cols=230 Identities=36% Similarity=0.615 Sum_probs=205.8
Q ss_pred CCCCCCCchHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCC-ChHHHHHHHHHHHHHHHHHHHHHH
Q 022963 44 PRTITTESYMKDAFANYAGYLNELNEKRERVVKSSRDITINSKKVIFQVHRISRD-NKEEVLKKAEADLEAVKDQYISRL 122 (289)
Q Consensus 44 ~~~~~~~~~~~~~F~~~~~eLd~~~d~REriik~SRdIt~~SKkiIf~LHR~~~~-~~~~~l~~A~~~l~~v~~~~l~~L 122 (289)
+..+++++++.++|++|+++||++||+||+|+|+|||||++||++||+|||++.. +.++++++|++.|.++++ ++++|
T Consensus 26 ~~~~~~~~~v~~~F~~~~~eLd~~~d~REriik~sRdIt~~SK~~If~LhR~~~~~~~~~il~ea~~~L~~i~~-~~~~L 104 (290)
T 3qb5_K 26 GKDVNSSSPVMLAFKSFQQELDARHDKYERLVKLSRDITVESKRTIFLLHRITSAPDMEDILTESEIKLDGVRQ-KIFQV 104 (290)
T ss_dssp -----CCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHH-HHHHH
T ss_pred ccCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHH-HHHHH
Confidence 3457788999999999999999999999999999999999999999999999864 478999999999999976 79999
Q ss_pred HHhhcCCChhhhhhhcchhHHHHHHHHHHHHHHhcCCCCCHHHHhhccCCCCCCCCC-----------------CcccCh
Q 022963 123 VKELQGTDFWKLRRAYSPGVQEYVEAATFCKFCRTGTLLDLEELNAGLLPLSDPAIE-----------------PLQINV 185 (289)
Q Consensus 123 a~~l~~~~~~ry~~~~s~~lQEyVEA~sf~~~L~~~~Llt~eev~~~l~~l~~~~~~-----------------~l~V~~ 185 (289)
++++++.+||+|+++|++|+||||||++|+|||++++|+|++|+++.|......+.. .|+|++
T Consensus 105 a~~l~~~~~yry~~~~s~~lQEyVEA~sf~~yL~~~~Lit~eev~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~ 184 (290)
T 3qb5_K 105 AQELSGEDMHQFHRAITTGLQEYVEAVSFQHFIKTRSLISMDEINKQLIFTTEDNGKENKTPSSDAQDKQFGTWRLRVTP 184 (290)
T ss_dssp HHHHSSSCSTTTGGGTHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHTTEECC--------------------CEECCCCH
T ss_pred HHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHhcccccccccccccccccccccccccceecCCH
Confidence 999999999999999999999999999999999999999999999877533222111 389999
Q ss_pred hhHHhhHHHhHHHHHHHHhhhhcCCchHHHHHHHHHHHHHHHHHhhhcCCCCCCC-cchhhHHHHHHHHHHHHhhhhhee
Q 022963 186 FDYLLGLADLTGELMRLAIGRISDGELEFAEKICRFSRDIYRELTLVVPLMDNNS-DMKTKMDTMLQSVLKIENACLSVH 264 (289)
Q Consensus 186 ~DYLlGL~DLtGELmR~ain~v~~Gd~e~~~~i~~fm~~Iy~~f~~L~~~lk~n~-~LRkK~D~lk~slkKvE~v~Ydl~ 264 (289)
+|||+||+||||||||+|||+|+.||+++|++||+||++||++|++| +++ |+ +||||+|+|||||+|||++|||++
T Consensus 185 eDYLlGL~DLtGELmR~ainsv~~Gd~~~~~~i~~fm~~Ly~gf~~L--~~~-~~~~LrKK~d~lk~svkKvE~v~Ydl~ 261 (290)
T 3qb5_K 185 VDYLLGVADLTGELMRMCINSVGNGDIDTPFEVSQFLRQVYDGFSFI--GNT-GPYEVSKKLYTLKQSLAKVENACYALK 261 (290)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHHH--GGG-SCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHhc--CCC-CChhhhHHHHHHHHHHHHHHHHhhhee
Confidence 99999999999999999999999999999999999999999999999 555 55 999999999999999999999999
Q ss_pred eecccccCCCCCC
Q 022963 265 VRGSEYTLLGSSD 277 (289)
Q Consensus 265 vRg~e~~~~~~~~ 277 (289)
|||+|+|++...|
T Consensus 262 vRg~e~pk~~~~d 274 (290)
T 3qb5_K 262 VRGSEIPKHMLAD 274 (290)
T ss_dssp HHTTCCCCCCC--
T ss_pred eecCCCCcccchh
Confidence 9999999876443
No 2
>3axj_B TRAX, translin associated factor X, isoform B; translin/TRAX heterodimer, passenger RNA cleavage, RNAse, DN protein; 2.10A {Drosophila melanogaster} PDB: 3riu_C
Probab=100.00 E-value=2.4e-66 Score=484.86 Aligned_cols=230 Identities=33% Similarity=0.544 Sum_probs=211.5
Q ss_pred CCCCCCchHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC--CChHHHHHHHHHHHHHHHHHHHHHH
Q 022963 45 RTITTESYMKDAFANYAGYLNELNEKRERVVKSSRDITINSKKVIFQVHRISR--DNKEEVLKKAEADLEAVKDQYISRL 122 (289)
Q Consensus 45 ~~~~~~~~~~~~F~~~~~eLd~~~d~REriik~SRdIt~~SKkiIf~LHR~~~--~~~~~~l~~A~~~l~~v~~~~l~~L 122 (289)
.++++++++.++|++|+++||++||+||+|+|+|||||+.||++||+|||++. .+.+++|++|++.+.++++++++.|
T Consensus 22 ~~~~~~~~v~~~F~~~~~~Ld~~~d~RErIikisRdIt~~Sk~~If~Lhr~~~~~~~~~~~l~eA~~~l~~i~~~~~~~l 101 (298)
T 3axj_B 22 AQLDEDSPIVQQFRIYSNELIMKHDRHERIVKLSRDITIESKRIIFLLHSIDSRKQNKEKVLEEARQRLNKLIAVNFRAV 101 (298)
T ss_dssp -CCCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCGGGHHHHHHHHHHHHHHHHHTHHHHH
T ss_pred cccCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36888999999999999999999999999999999999999999999999987 6688999999999999998788999
Q ss_pred HHhhcCCChhhhhhhcchhHHHHHHHHHHHHHHh---c------CCCCCHHHHhhccCCCCC------------------
Q 022963 123 VKELQGTDFWKLRRAYSPGVQEYVEAATFCKFCR---T------GTLLDLEELNAGLLPLSD------------------ 175 (289)
Q Consensus 123 a~~l~~~~~~ry~~~~s~~lQEyVEA~sf~~~L~---~------~~Llt~eev~~~l~~l~~------------------ 175 (289)
++++++.+||+|+++|++|+||||||++|++||+ + |+|+|++|+++.|.....
T Consensus 102 a~~l~~~~~y~y~~~~s~~lQE~VEA~~f~~yL~~~~~~~~~~~~~L~t~eev~~~L~~~~~~~~~~~~~~~~~~~~~d~ 181 (298)
T 3axj_B 102 ALELRDQDVYQFRSSYSPGLQEFIQAYTYMEYLCHEDAEGENETKSVSDWQAIQAVMQYVEESSQPKEEPTEGEDVQAIA 181 (298)
T ss_dssp HHHTTTSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHTCSSGGGGCCCCCHHHHHHHCEEECCCC----------------
T ss_pred HHHcCccCHHHHHhccCHHHHHHHHHHHHHHHHhccccccccccCCCCCHHHHHHHhccccccccccccccccccccccc
Confidence 9999999999999999999999999999999999 8 999999999987752111
Q ss_pred ----CCCCCcccChhhHHhhHHHhHHHHHHHHhhhhcCCchHHHHHHHHHHHHHHHHHhhhcCCCCCCCcchhhHHHHHH
Q 022963 176 ----PAIEPLQINVFDYLLGLADLTGELMRLAIGRISDGELEFAEKICRFSRDIYRELTLVVPLMDNNSDMKTKMDTMLQ 251 (289)
Q Consensus 176 ----~~~~~l~V~~~DYLlGL~DLtGELmR~ain~v~~Gd~e~~~~i~~fm~~Iy~~f~~L~~~lk~n~~LRkK~D~lk~ 251 (289)
+....|+|+++|||+||+||||||||+|||+|+.||++.|++||.||++||.+|++| +++.+++||||+|+|||
T Consensus 182 ~~~~~~~~~f~v~~edYLlGL~DLtGELmR~ainsv~~Gd~~~~~~i~~fm~~Ly~gf~~L--nlkn~~~LRKK~D~lk~ 259 (298)
T 3axj_B 182 QVESPKKFQFFVDPTEYILGLSDLTGELMRRCINSLGSGDTDTCLDTCKALQHFYSGYISL--NCQRARELWRKITTMKQ 259 (298)
T ss_dssp ----CCEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTC--CCTTCHHHHHHHHHHHH
T ss_pred ccccccccccCCCHHHHHHHHHHHHhHHHHHHHHHHhccchHhHHHHHHHHHHHHHHHHhc--CCCCchHHHHHHHHHHH
Confidence 111268999999999999999999999999999999999999999999999999999 67723899999999999
Q ss_pred HHHHHHhhhhheeeecccccCCCCC
Q 022963 252 SVLKIENACLSVHVRGSEYTLLGSS 276 (289)
Q Consensus 252 slkKvE~v~Ydl~vRg~e~~~~~~~ 276 (289)
||+|||++|||++|||+|+|.|+++
T Consensus 260 svkKvE~v~Ydl~vRg~e~~~~~~~ 284 (298)
T 3axj_B 260 SVLKAENVCYNVKVRGGEAAKWGAT 284 (298)
T ss_dssp HHHHHHHHHHHHHHHCHHHHHTC--
T ss_pred HHHHHHHHHHHheecCCCccccccc
Confidence 9999999999999999999998864
No 3
>3axj_A GM27569P, translin; translin/TRAX heterodimer, passenger RNA cleavage, RNAse, DN protein; 2.10A {Drosophila melanogaster} PDB: 2qva_A 2qrx_A 3riu_A
Probab=100.00 E-value=7.8e-65 Score=464.04 Aligned_cols=224 Identities=22% Similarity=0.326 Sum_probs=203.7
Q ss_pred CchHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCC--ChHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 022963 50 ESYMKDAFANYAGYLNELNEKRERVVKSSRDITINSKKVIFQVHRISRD--NKEEVLKKAEADLEAVKDQYISRLVKELQ 127 (289)
Q Consensus 50 ~~~~~~~F~~~~~eLd~~~d~REriik~SRdIt~~SKkiIf~LHR~~~~--~~~~~l~~A~~~l~~v~~~~l~~La~~l~ 127 (289)
++++.++|+.|+++||++||+||+|+|+|||||+.||++||+|||++.. +.++++++|++.++++++ .+++|+++++
T Consensus 17 ~~~i~~iF~~~~~~Ld~~~d~REriik~sRdIt~~sk~~I~~Lhr~~~~~~~~~~~~~eA~~~l~~i~~-~~~~L~~~l~ 95 (249)
T 3axj_A 17 NFVNLDIFSNYQKYIDNEQEVRENIRIVVREIEHLSKEAQIKLQIIHSDLSQISAACGLARKQVELCAQ-KYQKLAELVP 95 (249)
T ss_dssp HHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGGTCGGGHHHHHHHHHHHHHHHHH-HHHHHHHHSC
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccchHHHHHHHHHHHHHHH-HHHHHHHHhc
Confidence 4788999999999999999999999999999999999999999999853 367899999999999987 6899999999
Q ss_pred CCChhhhhhhcchhHHHHHHHHHHHHHHhcCCCCCHHHHhhccCCCCCCCCCCcccChhhHHhhHHHhHHHHHHHHhhhh
Q 022963 128 GTDFWKLRRAYSPGVQEYVEAATFCKFCRTGTLLDLEELNAGLLPLSDPAIEPLQINVFDYLLGLADLTGELMRLAIGRI 207 (289)
Q Consensus 128 ~~~~~ry~~~~s~~lQEyVEA~sf~~~L~~~~Llt~eev~~~l~~l~~~~~~~l~V~~~DYLlGL~DLtGELmR~ain~v 207 (289)
+.++|+|++.|++|+||||||++|++||++|+|+|++|+++.|. ++.....+|+|+++|||+||+||||||||||||+|
T Consensus 96 ~~~~yrY~~~~s~~lQE~VEA~~f~~yL~~~~L~t~eev~~~L~-~~~~~~~~f~v~~edYLlGL~DLtGEL~R~ain~v 174 (249)
T 3axj_A 96 AGQYYRYSDHWTFITQRLIFIIALVIYLEAGFLVTRETVAEMLG-LKISQSEGFHLDVEDYLLGILQLASELSRFATNSV 174 (249)
T ss_dssp TTCHHHHGGGTHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHT-CBSSTTTSSBCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCchHHHhhhccHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHhc-cccCCCcccccCHHHHHHHHHHHHhHHHHHHHHHH
Confidence 99999999999999999999999999999999999999998774 33334557999999999999999999999999999
Q ss_pred cCCchHHHHHHHHHHHHHHHHHhhhcCCCCCCCcchhhHHHHHHHHHHHHhhhhheeeecccccCCCCCCcc
Q 022963 208 SDGELEFAEKICRFSRDIYRELTLVVPLMDNNSDMKTKMDTMLQSVLKIENACLSVHVRGSEYTLLGSSDPS 279 (289)
Q Consensus 208 ~~Gd~e~~~~i~~fm~~Iy~~f~~L~~~lk~n~~LRkK~D~lk~slkKvE~v~Ydl~vRg~e~~~~~~~~~~ 279 (289)
+.||++.|++|++||++||.+|+.| +++ |++||||+|++||+|+|||++|||++|||+ .|..++++|.
T Consensus 175 ~~Gd~~~~~~i~~fm~~Ly~~f~~L--n~~-n~~LRkK~D~lk~sv~KvE~v~Ydl~vRg~-~~~~~~~~~~ 242 (249)
T 3axj_A 175 TMGDYERPLNISHFIGDLNTGFRLL--NLK-NDGLRKRFDALKYDVKKIEEVVYDVSIRGL-SSKEKDQQEE 242 (249)
T ss_dssp HTTCCSHHHHHHHHHHHHHHHHHHT--CCC-SSHHHHHHHHHHHHHHHHHHHHHHHHHTTC-CCC-------
T ss_pred hcCChHHHHHHHHHHHHHHHHHHhc--CCC-CccHHHHHHHHHHHHHHHHHHHHHhhhcCC-CCCccccCCC
Confidence 9999999999999999999999999 666 899999999999999999999999999999 7888888873
No 4
>1j1j_A Translin; testis/brain RNA binding protein, ssDNA binding protein, RNA protein, DNA binding protein; 2.20A {Homo sapiens} SCOP: a.118.16.1 PDB: 3qb5_A 3pja_A 1key_A
Probab=100.00 E-value=1.6e-64 Score=459.76 Aligned_cols=215 Identities=19% Similarity=0.351 Sum_probs=202.0
Q ss_pred CchHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC----CChHHHHHHHHHHHHHHHHHHHHHHHHh
Q 022963 50 ESYMKDAFANYAGYLNELNEKRERVVKSSRDITINSKKVIFQVHRISR----DNKEEVLKKAEADLEAVKDQYISRLVKE 125 (289)
Q Consensus 50 ~~~~~~~F~~~~~eLd~~~d~REriik~SRdIt~~SKkiIf~LHR~~~----~~~~~~l~~A~~~l~~v~~~~l~~La~~ 125 (289)
++++.++|+.|+++||++||+||+|+|+|||||+.||++||+|||++. .+.++++++|++.++++++ .+++|+++
T Consensus 12 ~~~~~~~f~~~~~~Ld~~~d~REriik~sRdI~~~Sk~~I~~Lhr~~~~~~~~~~~~~~~~A~~~l~~~~~-~~~~L~~~ 90 (240)
T 1j1j_A 12 SMSVSEIFVELQGFLAAEQDIREEIRKVVQSLEQTAREILTLLQGVHQGAGFQDIPKRCLKAREHFGTVKT-HLTSLKTK 90 (240)
T ss_dssp -CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGGSSSSSTTHHHHHHHHHHHHHHHHH-HHHHHHHT
T ss_pred CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccchhHHHHHHHHHHHHHHH-HHHHHHHH
Confidence 578999999999999999999999999999999999999999999972 3478899999999999887 68999999
Q ss_pred hcCCChhhhhhhcchhHHHHHHHHHHHHHHhcCCCCCHHHHhhccCCCCCCCCCCcccChhhHHhhHHHhHHHHHHHHhh
Q 022963 126 LQGTDFWKLRRAYSPGVQEYVEAATFCKFCRTGTLLDLEELNAGLLPLSDPAIEPLQINVFDYLLGLADLTGELMRLAIG 205 (289)
Q Consensus 126 l~~~~~~ry~~~~s~~lQEyVEA~sf~~~L~~~~Llt~eev~~~l~~l~~~~~~~l~V~~~DYLlGL~DLtGELmR~ain 205 (289)
+++.++|+|++.|++++||||||++|++||++|+|+|++|+++.| ++..+...+|+|+++|||+||+||||||||+|||
T Consensus 91 l~~~~~yrY~~~~s~~lQE~VEA~~f~~yL~~~~L~t~eev~~~L-~~~~~~~~~f~v~~edYLlGL~DltGEL~R~avn 169 (240)
T 1j1j_A 91 FPAEQYYRFHEHWRFVLQRLVFLAAFVVYLETETLVTREAVTEIL-GIEPDREKGFHLDVEDYLSGVLILASELSRLSVN 169 (240)
T ss_dssp SCGGGHHHHGGGTHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHH-TCCCSSSSSSCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccchHHHHhccccHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHh-CCCccccccCcCCHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999877 4555566689999999999999999999999999
Q ss_pred hhcCCchHHHHHHHHHHHHHHHHHhhhcCCCCCCCcchhhHHHHHHHHHHHHhhhhheeeeccc
Q 022963 206 RISDGELEFAEKICRFSRDIYRELTLVVPLMDNNSDMKTKMDTMLQSVLKIENACLSVHVRGSE 269 (289)
Q Consensus 206 ~v~~Gd~e~~~~i~~fm~~Iy~~f~~L~~~lk~n~~LRkK~D~lk~slkKvE~v~Ydl~vRg~e 269 (289)
+|+.||++.|++|++||++||.+|++| |++ |++||||+|++||+|+|||++|||++|||++
T Consensus 170 ~v~~Gd~~~~~~i~~fm~~Ly~~f~~L--nl~-n~~LRkK~D~lk~~vkKvE~v~Ydl~vRg~~ 230 (240)
T 1j1j_A 170 SVTAGDYSRPLHISTFINELDSGFRLL--NLK-NDSLRKRYDGLKYDVKKVEEVVYDLSIRGFN 230 (240)
T ss_dssp HHHTTCSSHHHHHHHHHHHHHHHHTTC--CCC-CHHHHHHHTTHHHHHHHHHHHHHHHHTTTC-
T ss_pred HHhcCChHhHHHHHHHHHHHHHHHHhc--CCC-CcchHHHHHHHHHHHHHHHHHHHHheecCCC
Confidence 999999999999999999999999999 666 8999999999999999999999999999995
No 5
>3lf9_A 4E10_D0_1IS1A_001_C (T161); epitope-scaffold, immune system; 2.00A {Artificial gene}
Probab=48.52 E-value=1e+02 Score=24.57 Aligned_cols=59 Identities=17% Similarity=0.224 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccC--------CC--ChHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 022963 68 NEKRERVVKSSRDITINSKKVIFQVHRIS--------RD--NKEEVLKKAEADLEAVKDQYISRLVKEL 126 (289)
Q Consensus 68 ~d~REriik~SRdIt~~SKkiIf~LHR~~--------~~--~~~~~l~~A~~~l~~v~~~~l~~La~~l 126 (289)
.++|..++|.++...-.+|-+|..+.|-. .+ -.+.....+++.++.+.+.+++.+-+.+
T Consensus 35 EERRKeLVK~akk~aEeaKVAIRNIRRDAnd~lKKl~KdkeISEDe~kr~e~eIQKLTDkyIkkID~ll 103 (121)
T 3lf9_A 35 EERRKDLVKIVRGEAEGGRVAVRNIARDAANDLAALGKDKEVNWFDISQALWEIQKLTDVAVKKIDEVL 103 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGCTTSCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhcCCCCHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 47899999999999999999999887731 11 1244566777888888877776665443
No 6
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=47.28 E-value=67 Score=25.95 Aligned_cols=66 Identities=11% Similarity=0.103 Sum_probs=42.9
Q ss_pred hhhHHhhHHHhHHHHHHHHhhh--hcCCchHHH--HHHHHHHHHHHHHHhhhcCCCCCCCcchhhHHHHHHHHHHHHhhh
Q 022963 185 VFDYLLGLADLTGELMRLAIGR--ISDGELEFA--EKICRFSRDIYRELTLVVPLMDNNSDMKTKMDTMLQSVLKIENAC 260 (289)
Q Consensus 185 ~~DYLlGL~DLtGELmR~ain~--v~~Gd~e~~--~~i~~fm~~Iy~~f~~L~~~lk~n~~LRkK~D~lk~slkKvE~v~ 260 (289)
.++||..++..+.+=||-.-.. -..-+.+.. ...+++..+++ .++++.+.++..++..++-.
T Consensus 26 ~ee~L~~vA~~vd~km~ei~~~~~~~~l~~~r~aVLaALNiadEl~--------------k~~~~~~~L~~~l~~~~kE~ 91 (138)
T 3hnw_A 26 SEEYLQRVASYINNKITEFNKEESYRRMSAELRTDMMYLNIADDYF--------------KAKKMADSLSLDIENKDKEI 91 (138)
T ss_dssp CHHHHHHHHHHHHHHHHHHTTCHHHHTSCHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHH
Confidence 5899999999999999988744 433232322 22334444443 23667777777777777777
Q ss_pred hhee
Q 022963 261 LSVH 264 (289)
Q Consensus 261 Ydl~ 264 (289)
|+++
T Consensus 92 ~~lK 95 (138)
T 3hnw_A 92 YDLK 95 (138)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7764
No 7
>1is1_A Ribosome recycling factor; translation; 2.20A {Vibrio parahaemolyticus} SCOP: d.67.3.1 PDB: 3r8n_Y
Probab=42.75 E-value=1.1e+02 Score=25.88 Aligned_cols=101 Identities=14% Similarity=0.160 Sum_probs=63.6
Q ss_pred CccccccccccccccccccCCCCCCCCchHHHHHHHHHHHH-----------------hhHHHHHHHHHHHHHHHHHHHH
Q 022963 24 SKTHRLHQLSGTALQSIAKRPRTITTESYMKDAFANYAGYL-----------------NELNEKRERVVKSSRDITINSK 86 (289)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~~~eL-----------------d~~~d~REriik~SRdIt~~SK 86 (289)
..+.|+.|++.-....+..-.-+.+..+.+..+-..+++.= .=-.++|++++|.++...-.+|
T Consensus 46 G~~~pL~qvA~Isv~~~r~l~I~p~D~~~i~~IekAI~~SdLglnP~~dG~~Iri~iP~lTeErRkelvK~~k~~~E~aK 125 (185)
T 1is1_A 46 GAATPLNQVANVVAEDARTLAITVFDKELTQKVEKAIMMSDLGLNPMSAGTIIRVPLPPLTEERRKDLVKIVRGEAEGGR 125 (185)
T ss_dssp TEEEEGGGTEEEEEEETTEEEEEESSTTTHHHHHHHHHHTTSSCCCEEETTEEEEECCCCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCccHHHceeeecCCCCEEEEEecCHhHHHHHHHHHHHcCCCCCcccCCCEEEEeCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 34677777655444332222223344567777777777640 0123889999999999999999
Q ss_pred HHHHHHhccCC--------C--ChHHHHHHHHHHHHHHHHHHHHHHHH
Q 022963 87 KVIFQVHRISR--------D--NKEEVLKKAEADLEAVKDQYISRLVK 124 (289)
Q Consensus 87 kiIf~LHR~~~--------~--~~~~~l~~A~~~l~~v~~~~l~~La~ 124 (289)
-.|..+.|-.. + -.+.....+++.++++.+++++.+-+
T Consensus 126 vaiRniRrda~~~lKk~~K~~~iseD~~k~~e~~iQkltd~~i~~id~ 173 (185)
T 1is1_A 126 VAVRNIRRDANNDLKALLKDKEISEDEDRKAQEEIQKLTDVAVKKIDE 173 (185)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhcCCCChhHHHHHHHHHHHHHHHHHHHHHH
Confidence 99988876311 1 12445666777777777776666544
No 8
>3lhp_S 4E10_D0_1ISEA_004_N (T93); epitope-scaffold, immune system; 2.70A {Artificial gene} PDB: 1y69_8
Probab=42.35 E-value=1.1e+02 Score=24.37 Aligned_cols=72 Identities=15% Similarity=0.192 Sum_probs=47.8
Q ss_pred HHHHHHHHHHHhhH----------HHHHHHHHHHHHHHHHHHHHHHHHHhccC--------CC--ChHHHHHHHHHHHHH
Q 022963 54 KDAFANYAGYLNEL----------NEKRERVVKSSRDITINSKKVIFQVHRIS--------RD--NKEEVLKKAEADLEA 113 (289)
Q Consensus 54 ~~~F~~~~~eLd~~----------~d~REriik~SRdIt~~SKkiIf~LHR~~--------~~--~~~~~l~~A~~~l~~ 113 (289)
....+.+...+|.. .++|.+++|.++...-.+|-.|..+.|-. .+ -.+.....+++.++.
T Consensus 21 ~~~~~~~~n~~~~~~~~IRl~iPTEERRkeLvK~akk~aEeaKVaIRNIRRDand~lKKl~Kd~eiSEDe~k~~e~eIQK 100 (123)
T 3lhp_S 21 DKAVEAFKNKLDKFKAAVRKVFPTEERIKDWLKIVRGEAEQARVAVRNVGRDANDKAAALGKDKEINWFDISQSLWDVQK 100 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGCTTSCGGGHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCeEEeeCCCHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhcCCCCHHHHHHHHHHHHH
Confidence 33445555555543 47899999999999999999999887731 11 112345667777777
Q ss_pred HHHHHHHHHHHh
Q 022963 114 VKDQYISRLVKE 125 (289)
Q Consensus 114 v~~~~l~~La~~ 125 (289)
+.+.+++.+-+.
T Consensus 101 LTDkyIkkID~l 112 (123)
T 3lhp_S 101 LTDAAIKKIEAA 112 (123)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 777776665443
No 9
>1wqg_A Ribosome recycling factor; translation factor, triple-helix bundle, protein synthesis, translation; 2.15A {Mycobacterium tuberculosis} SCOP: d.67.3.1 PDB: 1wqf_A 1wqh_A
Probab=42.24 E-value=1.2e+02 Score=25.80 Aligned_cols=101 Identities=16% Similarity=0.223 Sum_probs=63.4
Q ss_pred CccccccccccccccccccCCCCCCCCchHHHHHHHHHHH-H----------------hhHHHHHHHHHHHHHHHHHHHH
Q 022963 24 SKTHRLHQLSGTALQSIAKRPRTITTESYMKDAFANYAGY-L----------------NELNEKRERVVKSSRDITINSK 86 (289)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~~~e-L----------------d~~~d~REriik~SRdIt~~SK 86 (289)
..+.|+.|++.-....+..-.-+.+..+.+..+-..+++. | .=-.++|++++|.++...-.+|
T Consensus 46 G~~~pL~qvA~Isv~~~r~l~I~p~D~~~i~~IekAI~~SdLglnP~~dG~~Iri~iP~lTeErRkelvK~~k~~~E~aK 125 (185)
T 1wqg_A 46 GAATPITQLASINVPEARLVVIKPYEANQLRAIETAIRNSDLGVNPTNDGALIRVAVPQLTEERRRELVKQAKHKGEEAK 125 (185)
T ss_dssp TEEEEGGGSEEEEEEETTEEEEEESSGGGHHHHHHHHHHSTTCCCCEECSSCEEEECCCCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCcccHHHceeeecCCCCEEEEEeCCHhHHHHHHHHHHHcCCCCCcccCCCEEEEeCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 3467777765544433222223334456777777777764 0 0123889999999999999999
Q ss_pred HHHHHHhccCC--------C--ChHHHHHHHHHHHHHHHHHHHHHHHH
Q 022963 87 KVIFQVHRISR--------D--NKEEVLKKAEADLEAVKDQYISRLVK 124 (289)
Q Consensus 87 kiIf~LHR~~~--------~--~~~~~l~~A~~~l~~v~~~~l~~La~ 124 (289)
-.|..+.|-.. + -.+.....+++.++++.+++++.+-+
T Consensus 126 vaiRniRrda~~~lKk~~K~~~iseD~~k~~e~~iQkltd~~i~~id~ 173 (185)
T 1wqg_A 126 VSVRNIRRKAMEELHRIRKEGEAGEDEVGRAEKDLDKTTHQYVTQIDE 173 (185)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhcCCCChhHHHHHHHHHHHHHHHHHHHHHH
Confidence 99988766411 1 12445666777777777776666544
No 10
>1ge9_A Ribosome recycling factor; three-helix bundle; NMR {Aquifex aeolicus} SCOP: d.67.3.1
Probab=41.60 E-value=1.6e+02 Score=24.90 Aligned_cols=102 Identities=19% Similarity=0.209 Sum_probs=65.8
Q ss_pred CccccccccccccccccccCCCCCCCCchHHHHHHHHHHHHhh----------------HHHHHHHHHHHHHHHHHHHHH
Q 022963 24 SKTHRLHQLSGTALQSIAKRPRTITTESYMKDAFANYAGYLNE----------------LNEKRERVVKSSRDITINSKK 87 (289)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~~~eLd~----------------~~d~REriik~SRdIt~~SKk 87 (289)
..+.|+.|++.-....+..-.-+.+..+.+..+-..+++.|.- -.++|++++|.++...-.+|-
T Consensus 49 G~~tpL~qvA~Isv~~~r~l~I~p~D~~~i~~IekAI~~dLglnP~~dG~~Iri~iP~lTeErRkelvK~~k~~~E~aKv 128 (184)
T 1ge9_A 49 GSKVPIKQLGTISVPEHNQIVIQVWDQNAVPAIEKAIREELNLNPTVQGNVIRVTLPPLTEERRRELVRLLHKITEEARV 128 (184)
T ss_dssp SCEECTTTTCEEECSSSSEEEEECSSSSHHHHHHHHHHHHHCSCCEEETTEEEEECCCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCccHHHceeeecCCCCEEEEEecCHHHHHHHHHHHHhCCCCCcccCCCEEEEeCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 4467777765543333222223334467788888888873320 238999999999999999999
Q ss_pred HHHHHhccCC------C-ChHHHHHHHHHHHHHHHHHHHHHHHHh
Q 022963 88 VIFQVHRISR------D-NKEEVLKKAEADLEAVKDQYISRLVKE 125 (289)
Q Consensus 88 iIf~LHR~~~------~-~~~~~l~~A~~~l~~v~~~~l~~La~~ 125 (289)
.|..+.|-.. . -.+.....+++.++++.+++++.+-+.
T Consensus 129 aiRniRrda~~~lKk~~kiseD~~k~~e~~iQkltd~~i~~id~~ 173 (184)
T 1ge9_A 129 RVRNVRREAKEMIEELEGISEDEKKRALERLQKLTDKYIDEINKL 173 (184)
T ss_dssp HHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9988766311 1 124456667788888877776666443
No 11
>1dd5_A Ribosome recycling factor; three-helix bundle, beta-alpha-beta sandwich; 2.55A {Thermotoga maritima} SCOP: d.67.3.1 PDB: 1t1m_C
Probab=39.20 E-value=1.1e+02 Score=25.92 Aligned_cols=101 Identities=18% Similarity=0.203 Sum_probs=62.3
Q ss_pred CccccccccccccccccccCCCCCCCCchHHHHHHHHHHH----------------H-hhHHHHHHHHHHHHHHHHHHHH
Q 022963 24 SKTHRLHQLSGTALQSIAKRPRTITTESYMKDAFANYAGY----------------L-NELNEKRERVVKSSRDITINSK 86 (289)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~~~e----------------L-d~~~d~REriik~SRdIt~~SK 86 (289)
..+.|+.|++.-....+..-.-+.+..+.+..+-..+++. + .=-.++|++++|.++...-.+|
T Consensus 46 G~~~pL~qvA~Isv~~~r~l~I~p~D~~~i~~IekAI~~SdLglnP~~dG~~Iri~iP~lTeErRkelvK~~k~~~E~aK 125 (185)
T 1dd5_A 46 GVPTPVNQLATISISEERTLVIKPWDKSVLSLIEKAINASDLGLNPINDGNVIRLVFPSPTTEQREKWVKKAKEIVEEGK 125 (185)
T ss_dssp TEEEEGGGSEEEEECSTTEEEEEESSTTHHHHHHHHHHHSSSCCCCEECSSCEEEECCCCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCcccHHHceeeecCCCCEEEEEecCHhHHHHHHHHHHHcCCCCCcccCCCEEEEeCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 3467777765543333211122333456677777777764 0 0123889999999999999999
Q ss_pred HHHHHHhccCCC----------ChHHHHHHHHHHHHHHHHHHHHHHHH
Q 022963 87 KVIFQVHRISRD----------NKEEVLKKAEADLEAVKDQYISRLVK 124 (289)
Q Consensus 87 kiIf~LHR~~~~----------~~~~~l~~A~~~l~~v~~~~l~~La~ 124 (289)
-.|..+.|-..+ -.+.....+++.++++.+++++.+-+
T Consensus 126 vaiRniRrda~~~lKk~~K~~~iseD~~k~~e~~iQkltd~~i~~id~ 173 (185)
T 1dd5_A 126 IAIRNIRREILKKIKEDQKEGLIPEDDAKRLENEIQKLTDEFIEKLDE 173 (185)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhcCCCChhHHHHHHHHHHHHHHHHHHHHHH
Confidence 999887664211 12345566777777777766666543
No 12
>2qyw_A Vesicle transport through interaction with T-SNAR homolog; HABC domain, protein transport, endocytosis; 2.00A {Mus musculus} PDB: 2v8s_V
Probab=39.17 E-value=1.2e+02 Score=22.87 Aligned_cols=80 Identities=10% Similarity=0.259 Sum_probs=42.9
Q ss_pred chHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHHHHHHHHHhhcCCC
Q 022963 51 SYMKDAFANYAGYLNELNEKRERVVKSSRDITINSKKVIFQVHRISRDNKEEVLKKAEADLEAVKDQYISRLVKELQGTD 130 (289)
Q Consensus 51 ~~~~~~F~~~~~eLd~~~d~REriik~SRdIt~~SKkiIf~LHR~~~~~~~~~l~~A~~~l~~v~~~~l~~La~~l~~~~ 130 (289)
.++.++|+.|.+++... +.+|+..+.++ -.....++....+.+++..+++..+ .+.++--++.+.+
T Consensus 11 ~~mSelFe~YE~df~~l----------~~~i~~kl~~i---~~~~~~e~rk~~i~~ie~~ldEA~e-Ll~qMelE~r~~p 76 (102)
T 2qyw_A 11 AASSEHFEKLHEIFRGL----------LEDLQGVPERL---LGTAGTEEKKKLVRDFDEKQQEANE-TLAEMEEELRYAP 76 (102)
T ss_dssp HHHHHHHHHHHHHHHHH----------HHHHHHHHHHH---HTCCCSHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHTSC
T ss_pred ccHHHHHHHHHHHHHHH----------HHHHHHHHHHh---cccCCcHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhCC
Confidence 34468999998877654 23343333321 0111223344567777777777655 5666666666554
Q ss_pred hhhhhhhcchhHHHH
Q 022963 131 FWKLRRAYSPGVQEY 145 (289)
Q Consensus 131 ~~ry~~~~s~~lQEy 145 (289)
..++..+..-+.+|
T Consensus 77 -~s~R~~~~~klr~Y 90 (102)
T 2qyw_A 77 -LTFRNPMMSKLRNY 90 (102)
T ss_dssp -HHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHH
Confidence 33344444444444
No 13
>1gak_A SP18, fertilization protein; helical bundle, cell adhesion; 1.85A {Haliotis fulgens} SCOP: a.19.1.1
Probab=38.77 E-value=18 Score=29.35 Aligned_cols=27 Identities=30% Similarity=0.309 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 022963 69 EKRERVVKSSRDITINSKKVIFQVHRI 95 (289)
Q Consensus 69 d~REriik~SRdIt~~SKkiIf~LHR~ 95 (289)
=.|||+++.+++-++.||++|-.=|+.
T Consensus 51 ~nreRlm~~C~~y~~~Skkii~L~~~~ 77 (141)
T 1gak_A 51 VNRERMMRYCMDYARYSKKILQLKHLP 77 (141)
T ss_dssp HHHHHHHHBHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCc
Confidence 359999999999999999999776665
No 14
>1ise_A Ribosome recycling factor; translation; 2.20A {Escherichia coli} SCOP: d.67.3.1 PDB: 1ek8_A* 1zn0_A 1zn1_A 2rdo_8
Probab=38.76 E-value=1.2e+02 Score=25.83 Aligned_cols=101 Identities=15% Similarity=0.173 Sum_probs=62.2
Q ss_pred CccccccccccccccccccCCCCCCCCchHHHHHHHHHHH-H----------------hhHHHHHHHHHHHHHHHHHHHH
Q 022963 24 SKTHRLHQLSGTALQSIAKRPRTITTESYMKDAFANYAGY-L----------------NELNEKRERVVKSSRDITINSK 86 (289)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~~~e-L----------------d~~~d~REriik~SRdIt~~SK 86 (289)
..+.|+.|++.-....+..-.-+.+..+.+..+-..++.. | .=-.++|++++|.++...-.+|
T Consensus 46 G~~~pL~qvA~Isv~~~r~l~I~p~D~~~i~~IekAI~~SdLglnP~~dG~~Iri~iP~lTeErRkelvK~~k~~~E~aK 125 (185)
T 1ise_A 46 GTPTPLRQLASVTVEDSRTLKINVFDRSMSPAVEKAIMASDLGLNPNSAGSDIRVPLPPLTEERRKDLTKIVRGEAEQAR 125 (185)
T ss_dssp TEEEEGGGTEEEEEEETTEEEEEESSGGGHHHHHHHHHTTCTTCCCEESSSEEEEECCCCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCcccHHHceeeecCCCCEEEEeccCHhHHHHHHHHHHHcCCCCCcccCCCEEEEeCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 3466777765543333221222333456677777777653 1 0123889999999999999999
Q ss_pred HHHHHHhccCC----------CChHHHHHHHHHHHHHHHHHHHHHHHH
Q 022963 87 KVIFQVHRISR----------DNKEEVLKKAEADLEAVKDQYISRLVK 124 (289)
Q Consensus 87 kiIf~LHR~~~----------~~~~~~l~~A~~~l~~v~~~~l~~La~ 124 (289)
-.|..+.|-.. .-.+.....+++.++++.+++++.+-+
T Consensus 126 vaiRniRrda~~~lKk~~K~~~iseD~~k~~e~~iQkltd~~i~~id~ 173 (185)
T 1ise_A 126 VAVRNVGRDANDKVKALLKDKEISEDDDRRSQDDVQKLTDAAIKKIEA 173 (185)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSSSCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhcCCCChhHHHHHHHHHHHHHHHHHHHHHH
Confidence 99988876421 112345566777777777766666543
No 15
>4gfq_A Ribosome-recycling factor; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.65A {Bacillus anthracis}
Probab=37.27 E-value=1.2e+02 Score=26.30 Aligned_cols=102 Identities=17% Similarity=0.149 Sum_probs=63.5
Q ss_pred CccccccccccccccccccCCCCCCCCchHHHHHHHHHHHHhh-----------------HHHHHHHHHHHHHHHHHHHH
Q 022963 24 SKTHRLHQLSGTALQSIAKRPRTITTESYMKDAFANYAGYLNE-----------------LNEKRERVVKSSRDITINSK 86 (289)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~~~eLd~-----------------~~d~REriik~SRdIt~~SK 86 (289)
..++|+.|++.-....+..-.-+.+..+.+..+-..+++.=-. -.++|++++|.++...-.+|
T Consensus 70 G~~tPL~qvA~Isvpe~rtl~I~p~D~s~i~~IekAI~~S~LglnP~~dG~~Iri~iP~LTeErRkelvK~ak~~~E~aK 149 (209)
T 4gfq_A 70 GAPTPVVQLANITVPEARLLVIQPYDKTSIGDIEKAILKADLGLNPSNDGTVIRIAFPALTEERRRDLVKVVKKYAEEAK 149 (209)
T ss_dssp SCEEEGGGGEEEEEEETTEEEEEESSGGGHHHHHHHHHHHTSSCCCEECSSCEEEECCBCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCccchhhhheeecCCCCEEEEecCcHhhHHHHHHHHHHcCCCCCCCcCCCceeeeCCCccHHHHHHHHHHHHHHHHHHH
Confidence 4567777765544433222223344566777777777663111 23789999999999999999
Q ss_pred HHHHHHhccCCC----------ChHHHHHHHHHHHHHHHHHHHHHHHHh
Q 022963 87 KVIFQVHRISRD----------NKEEVLKKAEADLEAVKDQYISRLVKE 125 (289)
Q Consensus 87 kiIf~LHR~~~~----------~~~~~l~~A~~~l~~v~~~~l~~La~~ 125 (289)
-.|..+.|-..+ -.+.....+++.++++.+++++.+-+.
T Consensus 150 vaIRniRrda~~~lKk~~K~~~isEDe~k~~e~eiQklTd~~i~~iD~~ 198 (209)
T 4gfq_A 150 VAVRNVRRDGNDDLKKLEKAGEITEDDLRGYTEDIQKETDKYIAKVDEI 198 (209)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999887774211 113345566677777777666655443
No 16
>2kw0_A CCMH protein; oxidoreductase, cytochrome C maturation; NMR {Escherichia coli}
Probab=35.69 E-value=23 Score=26.94 Aligned_cols=42 Identities=12% Similarity=0.240 Sum_probs=37.3
Q ss_pred HhHHHHHHHHhhhhcCCchHHHHHHHHHHHHHHHHHhhhcCCCC
Q 022963 194 DLTGELMRLAIGRISDGELEFAEKICRFSRDIYRELTLVVPLMD 237 (289)
Q Consensus 194 DLtGELmR~ain~v~~Gd~e~~~~i~~fm~~Iy~~f~~L~~~lk 237 (289)
+++.+|++..-+.+..|+-+ .+|.+||-+=|..|.++.|+++
T Consensus 40 ~iA~dlR~~Vre~l~~G~Sd--~eI~~~mv~RYGdfVly~Pp~~ 81 (90)
T 2kw0_A 40 MIATDLRQKVYELMQEGKSK--KEIVDYMVARYGNFVTYDPPLT 81 (90)
T ss_dssp HHHHHHHHHHHHHHHHTCCH--HHHHHHHHHHHTTTCBCSCCSC
T ss_pred HHHHHHHHHHHHHHHcCCCH--HHHHHHHHHhcCCeEEeeCCCC
Confidence 78899999999999999854 5899999999999999988774
No 17
>1eh1_A Ribosome recycling factor; translation, hinge variability; 2.60A {Thermus thermophilus} SCOP: d.67.3.1 PDB: 2qbe_6 2qbg_6 2qbi_6* 2qbk_6* 2v46_Y* 2v48_Y* 2z4l_6* 2z4n_6* 3j0d_J 3j0e_G
Probab=30.45 E-value=1.2e+02 Score=25.65 Aligned_cols=56 Identities=25% Similarity=0.460 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCCC----------ChHHHHHHHHHHHHHHHHHHHHHHHH
Q 022963 69 EKRERVVKSSRDITINSKKVIFQVHRISRD----------NKEEVLKKAEADLEAVKDQYISRLVK 124 (289)
Q Consensus 69 d~REriik~SRdIt~~SKkiIf~LHR~~~~----------~~~~~l~~A~~~l~~v~~~~l~~La~ 124 (289)
++|++++|.++...-.+|-.|..+.|-..+ -.+.....+++.++++.+++++.+-+
T Consensus 109 ErRkelvK~~k~~~E~aKvaiRniRrda~~~lKk~~K~~~iseD~~k~~e~~iQkltd~~i~~id~ 174 (185)
T 1eh1_A 109 ERRKDLVRAVRQYAEEGRVAIRNIRREALDKLKKLAKELHLSEDETKRAEAEIQKITDEFIAKADQ 174 (185)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCChhHHHHHHHHHHHHHHHHHHHHHH
Confidence 789999999999999999999888764211 11334556667777777666655543
No 18
>2hl7_A Cytochrome C-type biogenesis protein CCMH; three-helices bundle, oxidoreductase; HET: PG4; 1.70A {Pseudomonas aeruginosa}
Probab=29.66 E-value=29 Score=25.96 Aligned_cols=41 Identities=15% Similarity=0.365 Sum_probs=35.3
Q ss_pred HhHHHHHHHHhhhhcCCchHHHHHHHHHHHHHHHHHhhhcCCC
Q 022963 194 DLTGELMRLAIGRISDGELEFAEKICRFSRDIYRELTLVVPLM 236 (289)
Q Consensus 194 DLtGELmR~ain~v~~Gd~e~~~~i~~fm~~Iy~~f~~L~~~l 236 (289)
++..+|++..-+.+..|+-+ .+|.+||.+=|..|.++.|++
T Consensus 43 ~iA~dlR~~V~~~l~~G~sd--~eI~~~~v~RYG~fVly~Pp~ 83 (84)
T 2hl7_A 43 PIAADLRKQIYGQLQQGKSD--GEIVDYMVARYGDFVRYKPPV 83 (84)
T ss_dssp HHHHHHHHHHHHHHHHTCCH--HHHHHHHHHHHTTTCEECCC-
T ss_pred HHHHHHHHHHHHHHHcCCCH--HHHHHHHHHhcCCeeeeeCCC
Confidence 78899999999999999854 589999999999999887754
No 19
>3qf7_D MRE11; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima}
Probab=23.28 E-value=1.1e+02 Score=20.06 Aligned_cols=34 Identities=26% Similarity=0.418 Sum_probs=27.9
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q 022963 55 DAFANYAGYLNELNEKRERVVKSSRDITINSKKV 88 (289)
Q Consensus 55 ~~F~~~~~eLd~~~d~REriik~SRdIt~~SKki 88 (289)
+-|+-|.+++.....-.|.++|+-.++....|+.
T Consensus 8 d~felfkey~k~r~~~he~l~k~~~ell~evkks 41 (50)
T 3qf7_D 8 DYFELFKEYLKKREENHEKLLKILDELLDEVKKS 41 (50)
T ss_dssp CHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHHC
T ss_pred hHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHh
Confidence 4588888889888888999999988887766654
Done!