Query 022964
Match_columns 289
No_of_seqs 260 out of 1546
Neff 5.5
Searched_HMMs 29240
Date Mon Mar 25 14:05:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022964.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/022964hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2da3_A Alpha-fetoprotein enhan 99.8 1.7E-18 5.8E-23 131.4 7.7 62 47-108 15-76 (80)
2 2dmt_A Homeobox protein BARH-l 99.7 2.6E-18 9.1E-23 131.0 8.6 62 47-108 15-76 (80)
3 2kt0_A Nanog, homeobox protein 99.7 2.4E-18 8.2E-23 132.0 7.7 62 47-108 20-81 (84)
4 2vi6_A Homeobox protein nanog; 99.7 1.2E-18 4.1E-23 126.6 5.5 61 48-108 2-62 (62)
5 2cue_A Paired box protein PAX6 99.7 4.5E-18 1.5E-22 129.7 8.8 63 48-110 6-68 (80)
6 2cra_A Homeobox protein HOX-B1 99.7 1.8E-18 6E-23 128.7 6.3 62 47-108 5-66 (70)
7 2dmu_A Homeobox protein goosec 99.7 3.2E-18 1.1E-22 127.1 7.7 61 48-108 6-66 (70)
8 2h1k_A IPF-1, pancreatic and d 99.7 2.9E-18 1E-22 125.0 7.1 59 49-107 3-61 (63)
9 2dmq_A LIM/homeobox protein LH 99.7 4.5E-18 1.5E-22 129.3 8.0 64 47-110 5-68 (80)
10 1nk2_P Homeobox protein VND; h 99.7 5.4E-18 1.9E-22 128.4 8.4 64 48-111 8-71 (77)
11 2e1o_A Homeobox protein PRH; D 99.7 4.3E-18 1.5E-22 126.6 7.7 61 48-108 6-66 (70)
12 2da2_A Alpha-fetoprotein enhan 99.7 2.9E-18 1E-22 127.2 6.4 62 47-108 5-66 (70)
13 2hdd_A Protein (engrailed home 99.7 3.6E-18 1.2E-22 123.7 6.4 58 49-106 3-60 (61)
14 3a01_A Homeodomain-containing 99.7 4.9E-18 1.7E-22 133.4 7.7 65 48-112 16-80 (93)
15 1ig7_A Homeotic protein MSX-1; 99.7 5.2E-18 1.8E-22 121.4 7.1 57 50-106 1-57 (58)
16 2dms_A Homeobox protein OTX2; 99.7 5.6E-18 1.9E-22 129.1 7.5 63 47-109 5-67 (80)
17 1fjl_A Paired protein; DNA-bin 99.7 7.3E-18 2.5E-22 128.7 7.8 62 47-108 16-77 (81)
18 1puf_A HOX-1.7, homeobox prote 99.7 1.4E-17 4.9E-22 126.0 9.3 62 48-109 12-73 (77)
19 2djn_A Homeobox protein DLX-5; 99.7 4.9E-18 1.7E-22 126.3 6.5 62 47-108 5-66 (70)
20 2da1_A Alpha-fetoprotein enhan 99.7 4.4E-18 1.5E-22 126.3 6.2 62 47-108 5-66 (70)
21 1zq3_P PRD-4, homeotic bicoid 99.7 9.2E-18 3.1E-22 124.3 7.8 61 49-109 2-62 (68)
22 2r5y_A Homeotic protein sex co 99.7 9.2E-18 3.1E-22 130.2 7.4 62 46-107 25-86 (88)
23 1bw5_A ISL-1HD, insulin gene e 99.7 4.5E-18 1.5E-22 125.0 5.3 60 49-108 3-62 (66)
24 1ahd_P Antennapedia protein mu 99.7 6.3E-18 2.2E-22 125.3 6.0 60 49-108 2-61 (68)
25 2l7z_A Homeobox protein HOX-A1 99.7 1.1E-17 3.8E-22 125.5 7.4 62 47-108 5-66 (73)
26 1jgg_A Segmentation protein EV 99.7 9.2E-18 3.1E-22 121.1 6.7 58 50-107 2-59 (60)
27 1wh5_A ZF-HD homeobox family p 99.7 7.5E-18 2.6E-22 129.1 6.5 60 47-106 15-78 (80)
28 1yz8_P Pituitary homeobox 2; D 99.7 4.5E-18 1.5E-22 125.8 4.9 61 48-108 2-62 (68)
29 1uhs_A HOP, homeodomain only p 99.7 1.5E-17 5.1E-22 124.3 7.6 59 50-108 2-61 (72)
30 3rkq_A Homeobox protein NKX-2. 99.7 1.3E-17 4.6E-22 118.7 7.0 57 49-105 2-58 (58)
31 2da5_A Zinc fingers and homeob 99.7 1.1E-17 3.9E-22 126.2 6.9 59 50-108 8-66 (75)
32 2da4_A Hypothetical protein DK 99.7 6.6E-18 2.3E-22 128.6 5.6 61 48-108 7-71 (80)
33 2ecc_A Homeobox and leucine zi 99.7 1.1E-17 3.9E-22 127.5 6.8 59 51-109 5-63 (76)
34 1ftt_A TTF-1 HD, thyroid trans 99.7 1.3E-17 4.6E-22 123.4 7.0 61 49-109 2-62 (68)
35 2k40_A Homeobox expressed in E 99.7 1.1E-17 3.6E-22 123.3 6.2 61 50-110 2-62 (67)
36 2m0c_A Homeobox protein arista 99.7 1.8E-17 6.1E-22 124.1 7.3 62 47-108 7-68 (75)
37 1b8i_A Ultrabithorax, protein 99.7 1.1E-17 3.6E-22 128.1 6.1 61 48-108 19-79 (81)
38 2hi3_A Homeodomain-only protei 99.7 2.1E-17 7.3E-22 123.9 7.3 59 50-108 3-62 (73)
39 1wh7_A ZF-HD homeobox family p 99.7 1.1E-17 3.9E-22 128.4 5.7 59 47-106 15-78 (80)
40 3a03_A T-cell leukemia homeobo 99.7 2.2E-17 7.4E-22 117.9 6.5 54 54-107 2-55 (56)
41 1akh_A Protein (mating-type pr 99.7 1.5E-17 5.1E-22 120.2 5.6 58 48-105 4-61 (61)
42 3a02_A Homeobox protein arista 99.7 1.9E-17 6.5E-22 119.5 5.8 57 52-108 2-58 (60)
43 2dn0_A Zinc fingers and homeob 99.7 1.8E-17 6.2E-22 125.2 5.7 60 49-108 8-67 (76)
44 1b72_A Protein (homeobox prote 99.7 3.1E-17 1E-21 129.5 6.9 63 47-109 32-94 (97)
45 3nar_A ZHX1, zinc fingers and 99.7 2.2E-17 7.7E-22 130.1 6.1 63 48-110 24-86 (96)
46 1x2n_A Homeobox protein pknox1 99.7 5.6E-17 1.9E-21 121.3 7.5 62 48-109 6-70 (73)
47 1puf_B PRE-B-cell leukemia tra 99.7 4.1E-17 1.4E-21 122.1 6.6 62 50-111 2-66 (73)
48 2ecb_A Zinc fingers and homeob 99.7 3.8E-17 1.3E-21 128.0 6.4 57 52-108 14-70 (89)
49 2ly9_A Zinc fingers and homeob 99.7 5.1E-17 1.8E-21 121.7 6.6 59 50-108 7-65 (74)
50 2cqx_A LAG1 longevity assuranc 99.7 2.7E-17 9.3E-22 123.7 4.9 59 50-108 9-68 (72)
51 1k61_A Mating-type protein alp 99.7 6.6E-17 2.3E-21 116.5 6.5 56 52-107 1-59 (60)
52 1b72_B Protein (PBX1); homeodo 99.7 1.2E-16 4E-21 123.3 7.8 61 50-110 2-65 (87)
53 1du6_A PBX1, homeobox protein 99.7 5.1E-17 1.7E-21 118.5 5.4 58 49-106 3-63 (64)
54 1le8_B Mating-type protein alp 99.7 6.6E-17 2.3E-21 124.2 5.6 64 49-112 2-68 (83)
55 2cuf_A FLJ21616 protein; homeo 99.7 1.6E-16 5.3E-21 124.9 7.7 63 47-109 5-82 (95)
56 2dmn_A Homeobox protein TGIF2L 99.7 1.8E-16 6.2E-21 122.0 7.4 64 47-110 5-71 (83)
57 2dmp_A Zinc fingers and homeob 99.6 2.4E-16 8.3E-21 122.9 7.9 58 51-108 15-72 (89)
58 1mnm_C Protein (MAT alpha-2 tr 99.6 1.9E-16 6.6E-21 122.4 7.1 60 47-106 25-87 (87)
59 1au7_A Protein PIT-1, GHF-1; c 99.6 2E-16 6.8E-21 133.7 5.6 61 47-107 85-145 (146)
60 2l9r_A Homeobox protein NKX-3. 99.6 1.1E-16 3.7E-21 119.8 3.4 56 55-110 10-65 (69)
61 1e3o_C Octamer-binding transcr 99.6 3.1E-16 1.1E-20 134.2 5.9 61 47-107 99-159 (160)
62 3nau_A Zinc fingers and homeob 99.6 5.7E-16 1.9E-20 115.0 6.4 53 56-108 11-63 (66)
63 2xsd_C POU domain, class 3, tr 99.6 3.1E-16 1.1E-20 135.0 5.5 63 47-109 97-159 (164)
64 1x2m_A LAG1 longevity assuranc 99.6 3E-16 1E-20 115.9 4.4 50 58-107 9-59 (64)
65 3d1n_I POU domain, class 6, tr 99.6 8.1E-16 2.8E-20 130.3 7.2 60 47-106 91-150 (151)
66 2e19_A Transcription factor 8; 99.6 1.1E-15 3.8E-20 112.4 6.1 53 54-106 8-60 (64)
67 2da6_A Hepatocyte nuclear fact 99.6 2.5E-15 8.5E-20 120.5 8.6 63 47-109 4-87 (102)
68 3l1p_A POU domain, class 5, tr 99.6 1.7E-15 5.7E-20 129.2 7.1 60 48-107 95-154 (155)
69 1wi3_A DNA-binding protein SAT 99.6 2.5E-15 8.4E-20 112.2 6.7 58 48-105 6-64 (71)
70 1lfb_A Liver transcription fac 99.6 1.3E-15 4.4E-20 121.4 4.6 64 47-110 7-91 (99)
71 3k2a_A Homeobox protein MEIS2; 99.6 2.6E-15 9E-20 111.1 5.6 59 55-113 4-65 (67)
72 2d5v_A Hepatocyte nuclear fact 99.5 2.8E-15 9.5E-20 128.3 5.3 62 47-108 95-156 (164)
73 2lk2_A Homeobox protein TGIF1; 99.4 9.6E-13 3.3E-17 103.0 6.6 56 55-110 11-69 (89)
74 2da7_A Zinc finger homeobox pr 99.3 7.6E-13 2.6E-17 99.2 5.4 47 58-104 14-60 (71)
75 1ic8_A Hepatocyte nuclear fact 99.3 3.5E-13 1.2E-17 119.1 3.4 60 47-106 113-193 (194)
76 1mh3_A Maltose binding-A1 home 99.2 3.4E-12 1.2E-16 120.0 4.2 54 52-105 368-421 (421)
77 2h8r_A Hepatocyte nuclear fact 99.2 2.4E-11 8.3E-16 109.2 5.6 56 49-104 142-218 (221)
78 2nzz_A Penetratin conjugated G 98.8 2.2E-10 7.6E-15 75.8 -2.0 27 91-117 1-27 (37)
79 2ys9_A Homeobox and leucine zi 93.5 0.062 2.1E-06 39.9 3.6 41 59-99 16-56 (70)
80 1hjb_A Ccaat/enhancer binding 90.9 0.71 2.4E-05 35.5 6.9 48 100-150 28-75 (87)
81 1gu4_A CAAT/enhancer binding p 89.5 0.63 2.2E-05 35.1 5.5 46 100-148 28-73 (78)
82 1t2k_D Cyclic-AMP-dependent tr 88.4 2.1 7E-05 30.2 7.3 38 112-149 23-60 (61)
83 1gd2_E Transcription factor PA 88.3 1.5 5.1E-05 32.3 6.6 38 112-149 30-67 (70)
84 2jn6_A Protein CGL2762, transp 87.5 0.78 2.7E-05 34.3 4.9 43 53-99 3-46 (97)
85 2wt7_B Transcription factor MA 87.1 4.2 0.00014 31.4 8.8 63 87-149 17-86 (90)
86 1jnm_A Proto-oncogene C-JUN; B 86.1 1 3.4E-05 32.0 4.5 37 113-149 24-60 (62)
87 1ci6_A Transcription factor AT 86.0 2.9 0.0001 29.8 7.0 46 101-149 16-61 (63)
88 2wt7_A Proto-oncogene protein 83.3 5.2 0.00018 28.4 7.3 38 112-149 24-61 (63)
89 2yy0_A C-MYC-binding protein; 79.2 3.1 0.00011 28.9 4.7 30 120-149 21-50 (53)
90 2dgc_A Protein (GCN4); basic d 78.2 3.9 0.00013 29.3 5.1 28 122-149 34-61 (63)
91 2glo_A Brinker CG9653-PA; prot 77.8 2.4 8.3E-05 28.9 3.8 45 53-98 3-47 (59)
92 2jee_A YIIU; FTSZ, septum, coi 77.5 8.3 0.00028 29.2 6.9 45 109-153 25-69 (81)
93 1hlv_A CENP-B, major centromer 76.5 5.3 0.00018 30.9 6.0 50 51-103 3-52 (131)
94 1gd2_E Transcription factor PA 73.5 7.3 0.00025 28.6 5.6 52 93-145 19-70 (70)
95 2oxj_A Hybrid alpha/beta pepti 71.8 5.7 0.0002 25.3 4.0 25 125-149 8-32 (34)
96 2yy0_A C-MYC-binding protein; 71.7 5.8 0.0002 27.5 4.5 31 111-141 19-49 (53)
97 2elh_A CG11849-PA, LD40883P; s 69.8 12 0.00041 27.4 6.2 43 51-98 18-60 (87)
98 1t2k_D Cyclic-AMP-dependent tr 66.9 23 0.00077 24.7 6.9 40 101-140 19-58 (61)
99 3c3g_A Alpha/beta peptide with 66.6 10 0.00034 24.0 4.2 24 126-149 8-31 (33)
100 1tc3_C Protein (TC3 transposas 66.1 9 0.00031 23.6 4.3 40 55-99 5-44 (51)
101 3m48_A General control protein 65.6 8.1 0.00028 24.4 3.7 25 125-149 7-31 (33)
102 3c3f_A Alpha/beta peptide with 65.2 11 0.00037 23.9 4.2 25 125-149 8-32 (34)
103 1gu4_A CAAT/enhancer binding p 63.8 34 0.0012 25.4 7.6 39 111-149 29-67 (78)
104 3s4r_A Vimentin; alpha-helix, 63.4 31 0.0011 26.3 7.6 57 91-148 37-93 (93)
105 1jko_C HIN recombinase, DNA-in 62.5 4.4 0.00015 25.6 2.2 41 55-100 5-45 (52)
106 2jee_A YIIU; FTSZ, septum, coi 62.0 37 0.0013 25.6 7.5 43 107-149 30-72 (81)
107 3iv1_A Tumor susceptibility ge 61.6 39 0.0013 25.3 7.6 51 99-149 13-63 (78)
108 1kd8_B GABH BLL, GCN4 acid bas 61.6 16 0.00055 23.5 4.6 28 123-150 6-33 (36)
109 2wt7_A Proto-oncogene protein 60.2 41 0.0014 23.6 7.2 28 120-147 25-52 (63)
110 3hug_A RNA polymerase sigma fa 60.2 20 0.00067 26.2 5.8 46 56-106 38-83 (92)
111 2wuj_A Septum site-determining 59.8 7.2 0.00025 27.2 3.1 29 120-148 29-57 (57)
112 1kd8_A GABH AIV, GCN4 acid bas 58.6 22 0.00075 22.8 4.8 28 124-151 7-34 (36)
113 3gp4_A Transcriptional regulat 57.5 73 0.0025 25.6 11.6 82 52-148 37-118 (142)
114 3m9b_A Proteasome-associated A 56.4 19 0.00064 32.7 5.9 38 108-145 58-95 (251)
115 3hnw_A Uncharacterized protein 55.4 56 0.0019 26.6 8.3 42 109-150 87-128 (138)
116 2bni_A General control protein 53.8 19 0.00064 22.9 3.9 24 126-149 9-32 (34)
117 1s7o_A Hypothetical UPF0122 pr 53.1 71 0.0024 24.6 8.3 47 55-106 22-68 (113)
118 3gpv_A Transcriptional regulat 52.7 72 0.0024 25.7 8.6 76 52-149 51-126 (148)
119 2hy6_A General control protein 52.6 24 0.00082 22.4 4.2 25 125-149 8-32 (34)
120 1r8e_A Multidrug-efflux transp 52.2 58 0.002 28.1 8.5 35 53-100 42-76 (278)
121 1jnm_A Proto-oncogene C-JUN; B 52.2 21 0.00072 25.0 4.5 31 118-148 22-52 (62)
122 1xsv_A Hypothetical UPF0122 pr 51.5 54 0.0018 25.2 7.3 47 55-106 25-71 (113)
123 1hjb_A Ccaat/enhancer binding 51.0 31 0.0011 26.2 5.6 36 114-149 32-67 (87)
124 2o8x_A Probable RNA polymerase 50.5 14 0.00047 25.0 3.3 47 55-106 15-61 (70)
125 1go4_E MAD1 (mitotic arrest de 50.5 23 0.00078 27.8 4.8 31 119-149 13-43 (100)
126 1uo4_A General control protein 50.3 24 0.00081 22.4 3.9 24 126-149 9-32 (34)
127 3m91_A Proteasome-associated A 50.3 49 0.0017 22.7 6.0 33 116-148 14-46 (51)
128 1ci6_A Transcription factor AT 50.0 52 0.0018 23.1 6.4 40 101-140 20-59 (63)
129 3w03_C DNA repair protein XRCC 49.9 36 0.0012 29.3 6.5 36 113-148 147-182 (184)
130 1dh3_A Transcription factor CR 48.1 52 0.0018 22.6 5.9 27 121-147 25-51 (55)
131 1p4w_A RCSB; solution structur 45.5 39 0.0013 25.5 5.5 47 53-105 32-78 (99)
132 1go4_E MAD1 (mitotic arrest de 45.1 37 0.0013 26.6 5.2 34 111-144 12-45 (100)
133 3c57_A Two component transcrip 44.9 28 0.00097 25.7 4.5 47 55-107 27-73 (95)
134 3mzy_A RNA polymerase sigma-H 43.8 42 0.0015 25.7 5.6 46 55-106 109-154 (164)
135 1je8_A Nitrate/nitrite respons 43.5 55 0.0019 23.4 5.8 48 54-107 20-67 (82)
136 3m91_A Proteasome-associated A 43.2 72 0.0025 21.8 5.9 37 108-144 13-49 (51)
137 2v66_B Nuclear distribution pr 43.2 93 0.0032 24.7 7.4 46 104-149 10-59 (111)
138 1nkp_B MAX protein, MYC proto- 43.1 89 0.0031 22.7 7.0 28 122-149 51-78 (83)
139 1fse_A GERE; helix-turn-helix 42.6 49 0.0017 22.4 5.3 47 54-106 10-56 (74)
140 1dh3_A Transcription factor CR 42.4 30 0.001 23.9 4.0 38 101-141 15-52 (55)
141 2rn7_A IS629 ORFA; helix, all 42.3 35 0.0012 25.4 4.8 46 53-98 4-52 (108)
142 1deb_A APC protein, adenomatou 39.9 42 0.0014 23.2 4.2 23 120-142 5-27 (54)
143 3a5t_A Transcription factor MA 39.5 2.3 7.9E-05 33.8 -2.5 34 112-145 59-92 (107)
144 1x3u_A Transcriptional regulat 39.5 54 0.0018 22.6 5.1 46 56-107 17-62 (79)
145 1nlw_A MAD protein, MAX dimeri 38.9 46 0.0016 24.5 4.8 30 120-149 49-78 (80)
146 2v71_A Nuclear distribution pr 37.6 1E+02 0.0035 26.6 7.4 51 99-149 58-112 (189)
147 3hnw_A Uncharacterized protein 37.5 1.3E+02 0.0044 24.4 7.7 46 107-152 78-123 (138)
148 3s9g_A Protein hexim1; cyclin 37.2 59 0.002 25.5 5.2 21 125-145 65-85 (104)
149 2xi8_A Putative transcription 37.1 25 0.00085 23.0 2.8 23 79-101 17-39 (66)
150 2oto_A M protein; helical coil 36.9 1.2E+02 0.0041 24.6 7.6 21 98-118 23-43 (155)
151 3lph_A Protein REV; helix-loop 36.8 15 0.00052 27.1 1.7 36 61-110 18-53 (72)
152 3mq7_A Bone marrow stromal ant 36.5 1.1E+02 0.0036 24.7 6.8 62 87-148 40-108 (121)
153 2p7v_B Sigma-70, RNA polymeras 36.1 63 0.0022 21.9 5.0 51 55-106 5-55 (68)
154 3he5_A Synzip1; heterodimeric 36.0 94 0.0032 20.6 6.2 39 109-147 8-46 (49)
155 3b7h_A Prophage LP1 protein 11 35.7 26 0.0009 23.9 2.9 23 79-101 23-45 (78)
156 1ku3_A Sigma factor SIGA; heli 35.4 64 0.0022 22.2 4.9 50 55-105 10-59 (73)
157 1a93_A Coiled coil, LZ, MYC pr 35.3 60 0.002 20.6 4.1 27 123-149 5-31 (34)
158 1iuf_A Centromere ABP1 protein 34.7 61 0.0021 25.8 5.3 51 50-100 6-60 (144)
159 2r1j_L Repressor protein C2; p 34.4 22 0.00076 23.4 2.2 24 79-102 21-44 (68)
160 2wq1_A General control protein 34.2 66 0.0022 20.2 4.1 24 126-149 8-31 (33)
161 2x7l_M HIV REV; nuclear export 34.1 8.9 0.00031 30.7 0.1 34 61-108 15-48 (115)
162 2a6c_A Helix-turn-helix motif; 33.9 35 0.0012 24.1 3.4 24 79-102 34-57 (83)
163 2b5a_A C.BCLI; helix-turn-heli 33.8 41 0.0014 22.8 3.6 23 79-101 26-48 (77)
164 1tty_A Sigma-A, RNA polymerase 33.8 65 0.0022 23.2 4.9 50 56-106 19-68 (87)
165 3qq6_A HTH-type transcriptiona 33.6 30 0.001 24.4 2.9 21 79-99 26-46 (78)
166 3bd1_A CRO protein; transcript 32.6 26 0.00089 24.5 2.5 23 79-101 14-36 (79)
167 3s9g_A Protein hexim1; cyclin 32.6 1.4E+02 0.0047 23.4 6.6 22 120-141 67-88 (104)
168 2fxo_A Myosin heavy chain, car 32.4 1.6E+02 0.0055 23.3 7.4 52 101-152 73-124 (129)
169 2eqb_B RAB guanine nucleotide 32.2 1.7E+02 0.006 22.6 7.3 19 130-148 45-63 (97)
170 1rp3_A RNA polymerase sigma fa 32.2 39 0.0013 27.9 3.9 46 56-106 188-233 (239)
171 1p9i_A Cortexillin I/GCN4 hybr 32.1 75 0.0026 19.2 4.0 24 125-148 6-29 (31)
172 1zug_A Phage 434 CRO protein; 31.8 25 0.00086 23.4 2.2 24 79-102 19-42 (71)
173 3mq7_A Bone marrow stromal ant 31.8 1.6E+02 0.0053 23.7 7.0 19 134-152 73-91 (121)
174 3i5g_B Myosin regulatory light 31.7 67 0.0023 25.3 5.1 41 51-91 5-50 (153)
175 3bs3_A Putative DNA-binding pr 31.5 41 0.0014 22.7 3.3 24 79-102 26-49 (76)
176 3he5_B Synzip2; heterodimeric 31.1 1.2E+02 0.0041 20.3 6.5 28 122-149 21-48 (52)
177 1u78_A TC3 transposase, transp 30.6 66 0.0023 24.4 4.7 41 54-99 5-45 (141)
178 1no4_A Late, head morphogenesi 30.1 1.8E+02 0.006 21.9 6.9 49 108-156 30-78 (97)
179 3hh0_A Transcriptional regulat 29.9 2E+02 0.007 23.0 7.8 73 52-149 39-111 (146)
180 2jpc_A SSRB; DNA binding prote 29.9 41 0.0014 22.1 3.0 27 80-106 17-43 (61)
181 2rnj_A Response regulator prot 29.7 73 0.0025 23.0 4.6 46 55-106 29-74 (91)
182 3t76_A VANU, transcriptional r 29.6 43 0.0015 24.7 3.3 37 79-117 40-76 (88)
183 1or7_A Sigma-24, RNA polymeras 29.6 75 0.0026 25.3 5.1 46 56-106 141-186 (194)
184 3omt_A Uncharacterized protein 29.5 45 0.0015 22.6 3.2 23 79-101 24-46 (73)
185 1a93_B MAX protein, coiled coi 29.5 89 0.0031 19.8 4.2 22 127-148 9-30 (34)
186 1t6f_A Geminin; coiled-coil, c 29.5 75 0.0026 20.4 3.8 24 122-145 11-34 (37)
187 3oja_A Leucine-rich immune mol 29.2 1.5E+02 0.0052 27.8 7.9 28 122-149 439-466 (487)
188 1adr_A P22 C2 repressor; trans 29.1 41 0.0014 22.6 3.0 24 79-102 21-44 (76)
189 3ulq_B Transcriptional regulat 29.1 1E+02 0.0034 22.6 5.3 46 53-104 27-72 (90)
190 2lv7_A Calcium-binding protein 28.9 1.7E+02 0.0059 21.4 8.4 47 52-98 26-79 (100)
191 3m9b_A Proteasome-associated A 28.2 72 0.0025 28.8 5.0 42 110-151 53-94 (251)
192 1r69_A Repressor protein CI; g 28.0 33 0.0011 22.7 2.2 24 79-102 17-40 (69)
193 3g7r_A Putative transcriptiona 27.9 1.3E+02 0.0046 24.2 6.5 40 65-105 45-84 (221)
194 2rgt_A Fusion of LIM/homeobox 27.9 3.3 0.00011 34.3 -3.6 29 48-76 135-163 (169)
195 1uii_A Geminin; human, DNA rep 27.8 1.5E+02 0.005 22.4 5.9 30 119-148 47-76 (83)
196 2k27_A Paired box protein PAX- 27.3 1.6E+02 0.0054 23.1 6.7 62 32-98 2-63 (159)
197 2r2v_A GCN4 leucine zipper; co 27.1 1.1E+02 0.0039 19.3 4.3 24 126-149 9-32 (34)
198 2vz4_A Tipal, HTH-type transcr 27.1 2E+02 0.0068 21.5 8.0 34 53-99 37-70 (108)
199 2kpj_A SOS-response transcript 26.9 47 0.0016 23.9 3.1 23 79-101 25-47 (94)
200 1y7y_A C.AHDI; helix-turn-heli 26.2 37 0.0013 22.8 2.3 23 79-101 29-51 (74)
201 1nkp_A C-MYC, MYC proto-oncoge 26.1 99 0.0034 23.1 4.8 28 122-149 56-83 (88)
202 3oa7_A Head morphogenesis prot 25.9 97 0.0033 27.1 5.3 39 108-146 34-72 (206)
203 2j5u_A MREC protein; bacterial 25.7 45 0.0015 29.7 3.3 42 111-152 19-63 (255)
204 2x48_A CAG38821; archeal virus 25.6 44 0.0015 21.6 2.4 36 58-98 18-53 (55)
205 4dzn_A Coiled-coil peptide CC- 25.4 1.2E+02 0.0042 18.5 4.3 24 122-145 6-29 (33)
206 3v86_A De novo design helix; c 25.4 70 0.0024 18.8 2.9 17 126-142 8-24 (27)
207 2cqr_A RSGI RUH-043, DNAJ homo 25.3 1.9E+02 0.0065 20.8 6.1 45 53-97 18-63 (73)
208 1fi6_A EH domain protein REPS1 25.0 81 0.0028 22.5 4.1 43 56-98 3-50 (92)
209 3twe_A Alpha4H; unknown functi 24.8 1E+02 0.0035 18.1 3.5 22 128-149 4-25 (27)
210 2wiu_B HTH-type transcriptiona 24.6 51 0.0018 23.0 2.9 23 79-101 28-50 (88)
211 3a7p_A Autophagy protein 16; c 24.2 3.1E+02 0.011 22.8 7.9 43 111-153 96-138 (152)
212 3kz3_A Repressor protein CI; f 23.9 41 0.0014 23.4 2.2 24 79-102 28-51 (80)
213 2k9q_A Uncharacterized protein 23.7 64 0.0022 22.1 3.2 23 79-101 18-40 (77)
214 1nkp_A C-MYC, MYC proto-oncoge 23.6 1.3E+02 0.0045 22.3 5.1 32 114-145 55-86 (88)
215 2wuj_A Septum site-determining 23.4 39 0.0013 23.4 1.9 36 105-140 21-56 (57)
216 1wt6_A Myotonin-protein kinase 23.3 2.4E+02 0.0081 21.1 6.5 20 130-149 50-69 (81)
217 2eqb_B RAB guanine nucleotide 23.1 99 0.0034 24.0 4.3 30 119-148 6-35 (97)
218 1pdn_C Protein (PRD paired); p 23.0 1.7E+02 0.0057 21.3 5.7 45 54-98 74-125 (128)
219 1pdn_C Protein (PRD paired); p 22.9 1.6E+02 0.0054 21.5 5.5 40 55-99 17-56 (128)
220 3w03_C DNA repair protein XRCC 22.9 1.5E+02 0.0051 25.5 5.8 39 112-150 139-177 (184)
221 3gyk_A 27KDA outer membrane pr 22.8 2.3E+02 0.008 22.0 6.9 41 62-102 86-126 (175)
222 1r8d_A Transcription activator 22.3 2.5E+02 0.0084 21.0 8.3 34 53-99 38-71 (109)
223 3pvv_A Chromosomal replication 22.3 82 0.0028 24.2 3.8 23 129-151 76-98 (101)
224 3hh0_A Transcriptional regulat 22.2 2.8E+02 0.0097 22.1 7.3 20 79-98 7-26 (146)
225 1u78_A TC3 transposase, transp 22.1 1.3E+02 0.0044 22.6 5.0 44 54-101 59-104 (141)
226 1deb_A APC protein, adenomatou 22.0 2E+02 0.0068 19.8 6.2 35 113-147 12-46 (54)
227 2ef8_A C.ECOT38IS, putative tr 22.0 49 0.0017 22.8 2.3 23 79-101 26-48 (84)
228 2dq0_A Seryl-tRNA synthetase; 21.6 2.5E+02 0.0086 26.9 7.9 62 93-154 34-98 (455)
229 1wle_A Seryl-tRNA synthetase; 21.5 5.7E+02 0.019 24.9 11.0 65 91-155 71-146 (501)
230 3q4f_C DNA repair protein XRCC 21.5 1.3E+02 0.0043 26.0 5.1 22 120-141 163-184 (186)
231 2pmy_A RAS and EF-hand domain- 21.4 67 0.0023 22.7 3.0 44 55-98 20-68 (91)
232 1b0n_A Protein (SINR protein); 21.2 64 0.0022 23.5 2.9 20 80-99 18-37 (111)
233 2v4h_A NF-kappa-B essential mo 21.0 3.1E+02 0.011 21.6 7.0 37 112-148 63-99 (110)
234 3bdn_A Lambda repressor; repre 21.0 41 0.0014 28.3 2.0 24 78-101 32-55 (236)
235 4b4t_K 26S protease regulatory 20.8 1.2E+02 0.0041 29.0 5.4 43 100-142 45-87 (428)
236 2wt7_B Transcription factor MA 20.8 2.1E+02 0.0072 21.7 5.7 50 95-144 37-88 (90)
237 2ict_A Antitoxin HIGA; helix-t 20.8 54 0.0019 23.5 2.4 23 79-101 24-46 (94)
238 3f6w_A XRE-family like protein 20.7 94 0.0032 21.4 3.6 23 79-101 30-52 (83)
239 4h22_A Leucine-rich repeat fli 20.7 3.1E+02 0.01 21.4 7.0 54 103-156 36-89 (103)
240 3ilw_A DNA gyrase subunit A; D 20.7 4.7E+02 0.016 25.5 9.6 74 76-149 385-461 (470)
241 1q06_A Transcriptional regulat 20.4 3.1E+02 0.011 21.4 8.9 35 53-100 36-70 (135)
242 2hin_A GP39, repressor protein 20.4 65 0.0022 23.2 2.7 22 79-100 13-34 (71)
243 1zx4_A P1 PARB, plasmid partit 20.3 2.3E+02 0.0079 24.2 6.6 24 77-100 25-48 (192)
244 1nkp_B MAX protein, MYC proto- 20.2 1.3E+02 0.0045 21.7 4.4 29 116-144 52-80 (83)
245 3u06_A Protein claret segregat 20.2 1.3E+02 0.0044 28.7 5.4 30 120-149 12-41 (412)
No 1
>2da3_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.75 E-value=1.7e-18 Score=131.41 Aligned_cols=62 Identities=24% Similarity=0.450 Sum_probs=57.7
Q ss_pred CCCCCCCCcCCHHHHHHHHhhhhccCCCCHHHHHHHHHHhCCChhhhhhHhhhhHHHHHHHH
Q 022964 47 FHQPEKKRRLTVDQVQFLEKSFEVENKLEPERKIQLAKDLGLQPRQVAIWFQNRRARWKTKQ 108 (289)
Q Consensus 47 ~~~~rkR~R~T~eQl~~LE~~F~~~~~P~~~~r~~LA~~LgLs~rQVkvWFQNRRak~Krk~ 108 (289)
..++++|++||.+|+..||..|..++||+..++..||.+|||+++||++||||||+|+|+++
T Consensus 15 ~~~rr~Rt~ft~~Ql~~Le~~f~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~ 76 (80)
T 2da3_A 15 QRDKRLRTTITPEQLEILYQKYLLDSNPTRKMLDHIAHEVGLKKRVVQVWFQNTRARERKSG 76 (80)
T ss_dssp CCCTTCCSSCCTTTHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHSSC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCcCHHHhHHHhHHHHHhHhhhc
Confidence 35566777899999999999999999999999999999999999999999999999999864
No 2
>2dmt_A Homeobox protein BARH-like 1; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.75 E-value=2.6e-18 Score=130.99 Aligned_cols=62 Identities=37% Similarity=0.558 Sum_probs=57.5
Q ss_pred CCCCCCCCcCCHHHHHHHHhhhhccCCCCHHHHHHHHHHhCCChhhhhhHhhhhHHHHHHHH
Q 022964 47 FHQPEKKRRLTVDQVQFLEKSFEVENKLEPERKIQLAKDLGLQPRQVAIWFQNRRARWKTKQ 108 (289)
Q Consensus 47 ~~~~rkR~R~T~eQl~~LE~~F~~~~~P~~~~r~~LA~~LgLs~rQVkvWFQNRRak~Krk~ 108 (289)
...+++|++||..|+..||..|..++||+..++..||..|||+++||++||||||+|+|+..
T Consensus 15 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kk~~ 76 (80)
T 2dmt_A 15 KKGRRSRTVFTELQLMGLEKRFEKQKYLSTPDRIDLAESLGLSQLQVKTWYQNRRMKWKKSG 76 (80)
T ss_dssp CCCCCSCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSCCC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCHHHeeeccHHHHHHhhccc
Confidence 45566777899999999999999999999999999999999999999999999999999854
No 3
>2kt0_A Nanog, homeobox protein nanog; homeodomain, structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; NMR {Homo sapiens}
Probab=99.74 E-value=2.4e-18 Score=131.99 Aligned_cols=62 Identities=26% Similarity=0.402 Sum_probs=57.6
Q ss_pred CCCCCCCCcCCHHHHHHHHhhhhccCCCCHHHHHHHHHHhCCChhhhhhHhhhhHHHHHHHH
Q 022964 47 FHQPEKKRRLTVDQVQFLEKSFEVENKLEPERKIQLAKDLGLQPRQVAIWFQNRRARWKTKQ 108 (289)
Q Consensus 47 ~~~~rkR~R~T~eQl~~LE~~F~~~~~P~~~~r~~LA~~LgLs~rQVkvWFQNRRak~Krk~ 108 (289)
..++++|++||..|+..||..|..++||+..++..||..|||+++||+|||||||+|+|+.+
T Consensus 20 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~vWFqNRR~k~kk~~ 81 (84)
T 2kt0_A 20 VKKQKTRTVFSSTQLCVLNDRFQRQKYLSLQQMQELSNILNLSYKQVKTWFQNQRMKSKRWQ 81 (84)
T ss_dssp SCSCCCSSCCCHHHHHHHHHHHHHSSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHTTTSCC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHh
Confidence 45566777899999999999999999999999999999999999999999999999999864
No 4
>2vi6_A Homeobox protein nanog; homeodomain, DNA-binding, transcription, transcription facto developmental protein, transcription regulation, NUC homeobox; 2.6A {Mus musculus}
Probab=99.74 E-value=1.2e-18 Score=126.58 Aligned_cols=61 Identities=26% Similarity=0.389 Sum_probs=53.3
Q ss_pred CCCCCCCcCCHHHHHHHHhhhhccCCCCHHHHHHHHHHhCCChhhhhhHhhhhHHHHHHHH
Q 022964 48 HQPEKKRRLTVDQVQFLEKSFEVENKLEPERKIQLAKDLGLQPRQVAIWFQNRRARWKTKQ 108 (289)
Q Consensus 48 ~~~rkR~R~T~eQl~~LE~~F~~~~~P~~~~r~~LA~~LgLs~rQVkvWFQNRRak~Krk~ 108 (289)
.++++|++||..|+..||..|..++||+..++..||..|||+++||++||||||+|+|+++
T Consensus 2 ~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kr~q 62 (62)
T 2vi6_A 2 TKQKMRTVFSQAQLCALKDRFQKQKYLSLQQMQELSSILNLSYKQVKTWFQNQRMKCKRWQ 62 (62)
T ss_dssp ------CCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHTCGGGC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCHHHhhHHhHHhhcchhhcC
Confidence 3466778899999999999999999999999999999999999999999999999999863
No 5
>2cue_A Paired box protein PAX6; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.74 E-value=4.5e-18 Score=129.69 Aligned_cols=63 Identities=27% Similarity=0.536 Sum_probs=58.5
Q ss_pred CCCCCCCcCCHHHHHHHHhhhhccCCCCHHHHHHHHHHhCCChhhhhhHhhhhHHHHHHHHHH
Q 022964 48 HQPEKKRRLTVDQVQFLEKSFEVENKLEPERKIQLAKDLGLQPRQVAIWFQNRRARWKTKQLE 110 (289)
Q Consensus 48 ~~~rkR~R~T~eQl~~LE~~F~~~~~P~~~~r~~LA~~LgLs~rQVkvWFQNRRak~Krk~~e 110 (289)
..+++|++||..|+..||..|..++||+..++..||..|||+++||++||||||+|+|+....
T Consensus 6 ~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~~~ 68 (80)
T 2cue_A 6 SGQRNRTSFTQEQIEALEKEFERTHYPDVFARERLAAKIDLPEARIQVWFSNRRAKWRREEKL 68 (80)
T ss_dssp SSCCCCCCSCHHHHHHHHHHHTTCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCccCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCCCHHHhhHHHHHHHHHHHHHhhh
Confidence 456778889999999999999999999999999999999999999999999999999986543
No 6
>2cra_A Homeobox protein HOX-B13; DNA-binding, transcription regulation, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.74 E-value=1.8e-18 Score=128.71 Aligned_cols=62 Identities=24% Similarity=0.449 Sum_probs=57.8
Q ss_pred CCCCCCCCcCCHHHHHHHHhhhhccCCCCHHHHHHHHHHhCCChhhhhhHhhhhHHHHHHHH
Q 022964 47 FHQPEKKRRLTVDQVQFLEKSFEVENKLEPERKIQLAKDLGLQPRQVAIWFQNRRARWKTKQ 108 (289)
Q Consensus 47 ~~~~rkR~R~T~eQl~~LE~~F~~~~~P~~~~r~~LA~~LgLs~rQVkvWFQNRRak~Krk~ 108 (289)
...+++|++||..|+..||..|..++||+..++..||..|||+++||++||||||+|+|+..
T Consensus 5 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kk~~ 66 (70)
T 2cra_A 5 SSGRKKRIPYSKGQLRELEREYAANKFITKDKRRKISAATSLSERQITIWFQNRRVKEKKSG 66 (70)
T ss_dssp CCCCCSCCCSCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHTTTSSC
T ss_pred CCCCCCCCcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCCCHHHhhHhhHhHHHHhcccC
Confidence 35567788899999999999999999999999999999999999999999999999999854
No 7
>2dmu_A Homeobox protein goosecoid; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.74 E-value=3.2e-18 Score=127.14 Aligned_cols=61 Identities=28% Similarity=0.544 Sum_probs=57.5
Q ss_pred CCCCCCCcCCHHHHHHHHhhhhccCCCCHHHHHHHHHHhCCChhhhhhHhhhhHHHHHHHH
Q 022964 48 HQPEKKRRLTVDQVQFLEKSFEVENKLEPERKIQLAKDLGLQPRQVAIWFQNRRARWKTKQ 108 (289)
Q Consensus 48 ~~~rkR~R~T~eQl~~LE~~F~~~~~P~~~~r~~LA~~LgLs~rQVkvWFQNRRak~Krk~ 108 (289)
..+++|++||.+|+..||..|..++||+..++..||..|||+++||++||||||+|+|+..
T Consensus 6 ~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~rr~~ 66 (70)
T 2dmu_A 6 SGRRHRTIFTDEQLEALENLFQETKYPDVGTREQLARKVHLREEKVEVWFKNRRAKWRRSG 66 (70)
T ss_dssp SSCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHTS
T ss_pred CCCCCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCCCHHHeehccccccccccccC
Confidence 4567788899999999999999999999999999999999999999999999999999864
No 8
>2h1k_A IPF-1, pancreatic and duodenal homeobox 1, homeodomain; protein-DNA complex, transcription/DNA complex; 2.42A {Mesocricetus auratus}
Probab=99.74 E-value=2.9e-18 Score=125.04 Aligned_cols=59 Identities=36% Similarity=0.624 Sum_probs=55.2
Q ss_pred CCCCCCcCCHHHHHHHHhhhhccCCCCHHHHHHHHHHhCCChhhhhhHhhhhHHHHHHH
Q 022964 49 QPEKKRRLTVDQVQFLEKSFEVENKLEPERKIQLAKDLGLQPRQVAIWFQNRRARWKTK 107 (289)
Q Consensus 49 ~~rkR~R~T~eQl~~LE~~F~~~~~P~~~~r~~LA~~LgLs~rQVkvWFQNRRak~Krk 107 (289)
.+++|++||..|+..||..|..++||+..++..||..|||+++||++||||||+|+|+.
T Consensus 3 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kk~ 61 (63)
T 2h1k_A 3 NKRTRTAYTRAQLLELEKEFLFNKYISRPRRVELAVMLNLTERHIKIWFQNRRMKWKKE 61 (63)
T ss_dssp --CCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCcCHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCcCHHHhhHHHHhhhhhhhhh
Confidence 46778889999999999999999999999999999999999999999999999999985
No 9
>2dmq_A LIM/homeobox protein LHX9; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.74 E-value=4.5e-18 Score=129.33 Aligned_cols=64 Identities=23% Similarity=0.459 Sum_probs=59.1
Q ss_pred CCCCCCCCcCCHHHHHHHHhhhhccCCCCHHHHHHHHHHhCCChhhhhhHhhhhHHHHHHHHHH
Q 022964 47 FHQPEKKRRLTVDQVQFLEKSFEVENKLEPERKIQLAKDLGLQPRQVAIWFQNRRARWKTKQLE 110 (289)
Q Consensus 47 ~~~~rkR~R~T~eQl~~LE~~F~~~~~P~~~~r~~LA~~LgLs~rQVkvWFQNRRak~Krk~~e 110 (289)
...+++|++||.+|+..||..|..++||+..++..||.+|||+++||++||||||+|+|++...
T Consensus 5 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~~~ 68 (80)
T 2dmq_A 5 SSGKRMRTSFKHHQLRTMKSYFAINHNPDAKDLKQLAQKTGLTKRVLQVWFQNARAKFRRNLLR 68 (80)
T ss_dssp CCCCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHS
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCCCHHHhhHccHHHHHHHHHHHHH
Confidence 3557778889999999999999999999999999999999999999999999999999987543
No 10
>1nk2_P Homeobox protein VND; homeodomain, DNA-binding protein, embryonic development, complex (homeodomain/DNA); HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1nk3_P* 1vnd_A 1qry_A
Probab=99.74 E-value=5.4e-18 Score=128.37 Aligned_cols=64 Identities=34% Similarity=0.466 Sum_probs=58.6
Q ss_pred CCCCCCCcCCHHHHHHHHhhhhccCCCCHHHHHHHHHHhCCChhhhhhHhhhhHHHHHHHHHHH
Q 022964 48 HQPEKKRRLTVDQVQFLEKSFEVENKLEPERKIQLAKDLGLQPRQVAIWFQNRRARWKTKQLEK 111 (289)
Q Consensus 48 ~~~rkR~R~T~eQl~~LE~~F~~~~~P~~~~r~~LA~~LgLs~rQVkvWFQNRRak~Krk~~e~ 111 (289)
.++++|++||..|+..||..|..++||+..++..||..|||+++||++||||||+|+|+.+.++
T Consensus 8 ~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNRR~k~kr~~~~~ 71 (77)
T 1nk2_P 8 KKRKRRVLFTKAQTYELERRFRQQRYLSAPEREHLASLIRLTPTQVKIWFQNHRYKTKRAQNEK 71 (77)
T ss_dssp CCCCCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCccCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCHHHHHHHhHHhhcchhhhhccc
Confidence 4456677799999999999999999999999999999999999999999999999999876554
No 11
>2e1o_A Homeobox protein PRH; DNA binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.74 E-value=4.3e-18 Score=126.58 Aligned_cols=61 Identities=43% Similarity=0.657 Sum_probs=57.3
Q ss_pred CCCCCCCcCCHHHHHHHHhhhhccCCCCHHHHHHHHHHhCCChhhhhhHhhhhHHHHHHHH
Q 022964 48 HQPEKKRRLTVDQVQFLEKSFEVENKLEPERKIQLAKDLGLQPRQVAIWFQNRRARWKTKQ 108 (289)
Q Consensus 48 ~~~rkR~R~T~eQl~~LE~~F~~~~~P~~~~r~~LA~~LgLs~rQVkvWFQNRRak~Krk~ 108 (289)
..+++|++||.+|+..||..|..++||+..++..||..|||+++||++||||||+|+|+..
T Consensus 6 ~~~r~R~~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~rr~~ 66 (70)
T 2e1o_A 6 SGKGGQVRFSNDQTIELEKKFETQKYLSPPERKRLAKMLQLSERQVKTWFQNRRAKWRRSG 66 (70)
T ss_dssp CCCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHS
T ss_pred CCCCCCCCCCHHHHHHHHHHHHcCCCcCHHHHHHHHHHHCCCHHHhhHhhHhhHhhcCCCC
Confidence 4566788899999999999999999999999999999999999999999999999999864
No 12
>2da2_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.73 E-value=2.9e-18 Score=127.23 Aligned_cols=62 Identities=24% Similarity=0.375 Sum_probs=57.8
Q ss_pred CCCCCCCCcCCHHHHHHHHhhhhccCCCCHHHHHHHHHHhCCChhhhhhHhhhhHHHHHHHH
Q 022964 47 FHQPEKKRRLTVDQVQFLEKSFEVENKLEPERKIQLAKDLGLQPRQVAIWFQNRRARWKTKQ 108 (289)
Q Consensus 47 ~~~~rkR~R~T~eQl~~LE~~F~~~~~P~~~~r~~LA~~LgLs~rQVkvWFQNRRak~Krk~ 108 (289)
...+++|++||.+|+..||..|..++||+..++..||..|||+++||++||||||+|+|+..
T Consensus 5 ~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kk~~ 66 (70)
T 2da2_A 5 SSGRSSRTRFTDYQLRVLQDFFDANAYPKDDEFEQLSNLLNLPTRVIVVWFQNARQKARKSG 66 (70)
T ss_dssp CCSCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHSCCCHHHHHHHHHHHHHHHCCCS
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHcCCCcCHHHHHHHHHHhCCCHHHhHHhhHhhhHHHhhcc
Confidence 35567788899999999999999999999999999999999999999999999999999854
No 13
>2hdd_A Protein (engrailed homeodomain Q50K); DNA binding, complex (DNA binding protein/DNA), transcription/DNA complex; HET: DNA; 1.90A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1hdd_C* 2jwt_A 3hdd_A 1p7j_A* 1p7i_A* 2hos_A 2hot_A 1du0_A* 1ztr_A 1enh_A 2p81_A
Probab=99.73 E-value=3.6e-18 Score=123.67 Aligned_cols=58 Identities=31% Similarity=0.611 Sum_probs=52.9
Q ss_pred CCCCCCcCCHHHHHHHHhhhhccCCCCHHHHHHHHHHhCCChhhhhhHhhhhHHHHHH
Q 022964 49 QPEKKRRLTVDQVQFLEKSFEVENKLEPERKIQLAKDLGLQPRQVAIWFQNRRARWKT 106 (289)
Q Consensus 49 ~~rkR~R~T~eQl~~LE~~F~~~~~P~~~~r~~LA~~LgLs~rQVkvWFQNRRak~Kr 106 (289)
.+++|++||..|+..||..|..++||+..++..||..|||+++||++||||||+|+|+
T Consensus 3 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk 60 (61)
T 2hdd_A 3 EKRPRTAFSSEQLARLKREFNENRYLTERRRQQLSSELGLNEAQIKIWFKNKRAKIKK 60 (61)
T ss_dssp ----CCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCcCHHHHHHHhhhhcccccc
Confidence 4677888999999999999999999999999999999999999999999999999986
No 14
>3a01_A Homeodomain-containing protein; homeodomain, protein-DNA complex, DNA-binding, homeobox, NUC developmental protein; 2.70A {Drosophila melanogaster}
Probab=99.73 E-value=4.9e-18 Score=133.39 Aligned_cols=65 Identities=32% Similarity=0.559 Sum_probs=59.2
Q ss_pred CCCCCCCcCCHHHHHHHHhhhhccCCCCHHHHHHHHHHhCCChhhhhhHhhhhHHHHHHHHHHHH
Q 022964 48 HQPEKKRRLTVDQVQFLEKSFEVENKLEPERKIQLAKDLGLQPRQVAIWFQNRRARWKTKQLEKD 112 (289)
Q Consensus 48 ~~~rkR~R~T~eQl~~LE~~F~~~~~P~~~~r~~LA~~LgLs~rQVkvWFQNRRak~Krk~~e~e 112 (289)
.++++|++||..|+..||..|..++||+..++..||..|||+++||+|||||||+|+|+...+..
T Consensus 16 ~~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~~~~~~ 80 (93)
T 3a01_A 16 KRKKPRTSFTRIQVAELEKRFHKQKYLASAERAALARGLKMTDAQVKTWFQNRRTKWRRQTAEER 80 (93)
T ss_dssp CCCCCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHTCC-
T ss_pred CCCCCCcCCCHHHHHHHHHHHHcCCCcCHHHHHHHHHHhCCChhhcccccHhhhhhhhhhhHHHH
Confidence 45667778999999999999999999999999999999999999999999999999999765543
No 15
>1ig7_A Homeotic protein MSX-1; helix-turn-helix, transcription/DNA complex; 2.20A {Mus musculus} SCOP: a.4.1.1
Probab=99.73 E-value=5.2e-18 Score=121.39 Aligned_cols=57 Identities=33% Similarity=0.530 Sum_probs=54.5
Q ss_pred CCCCCcCCHHHHHHHHhhhhccCCCCHHHHHHHHHHhCCChhhhhhHhhhhHHHHHH
Q 022964 50 PEKKRRLTVDQVQFLEKSFEVENKLEPERKIQLAKDLGLQPRQVAIWFQNRRARWKT 106 (289)
Q Consensus 50 ~rkR~R~T~eQl~~LE~~F~~~~~P~~~~r~~LA~~LgLs~rQVkvWFQNRRak~Kr 106 (289)
+++|++||..|+..||..|..++||+..++..||..|||+++||++||||||+|+|+
T Consensus 1 rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kr 57 (58)
T 1ig7_A 1 RKPRTPFTTAQLLALERKFRQKQYLSIAERAEFSSSLSLTETQVKIWFQNRRAKAKR 57 (58)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHhcCCCcCHHHHHHHHHHHCcCHHHhhhhhhHhhhhhcc
Confidence 467788999999999999999999999999999999999999999999999999986
No 16
>2dms_A Homeobox protein OTX2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.73 E-value=5.6e-18 Score=129.06 Aligned_cols=63 Identities=24% Similarity=0.377 Sum_probs=58.5
Q ss_pred CCCCCCCCcCCHHHHHHHHhhhhccCCCCHHHHHHHHHHhCCChhhhhhHhhhhHHHHHHHHH
Q 022964 47 FHQPEKKRRLTVDQVQFLEKSFEVENKLEPERKIQLAKDLGLQPRQVAIWFQNRRARWKTKQL 109 (289)
Q Consensus 47 ~~~~rkR~R~T~eQl~~LE~~F~~~~~P~~~~r~~LA~~LgLs~rQVkvWFQNRRak~Krk~~ 109 (289)
...+++|++||.+|+..||..|..++||+..++..||..|||+++||++||||||+|+|+.+.
T Consensus 5 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNRR~k~rk~~~ 67 (80)
T 2dms_A 5 SSGRRERTTFTRAQLDVLEALFAKTRYPDIFMREEVALKINLPESRVQVWFKNRRAKCRQQQQ 67 (80)
T ss_dssp CCCCCCCSSCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHTHHHHTTC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCcCHHHhhhhhHHHhHHhhHHHH
Confidence 355677888999999999999999999999999999999999999999999999999998653
No 17
>1fjl_A Paired protein; DNA-binding protein, paired BOX, transcription regulation; HET: DNA; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 3a01_B
Probab=99.72 E-value=7.3e-18 Score=128.69 Aligned_cols=62 Identities=27% Similarity=0.478 Sum_probs=57.2
Q ss_pred CCCCCCCCcCCHHHHHHHHhhhhccCCCCHHHHHHHHHHhCCChhhhhhHhhhhHHHHHHHH
Q 022964 47 FHQPEKKRRLTVDQVQFLEKSFEVENKLEPERKIQLAKDLGLQPRQVAIWFQNRRARWKTKQ 108 (289)
Q Consensus 47 ~~~~rkR~R~T~eQl~~LE~~F~~~~~P~~~~r~~LA~~LgLs~rQVkvWFQNRRak~Krk~ 108 (289)
..++++|++||..|+..||..|..++||+..++..||..|||+++||++||||||+|+|++.
T Consensus 16 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~rk~~ 77 (81)
T 1fjl_A 16 RKQRRSRTTFSASQLDELERAFERTQYPDIYTREELAQRTNLTEARIQVWFQNRRARLRKQH 77 (81)
T ss_dssp -CCCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHCcCHHHHHHHHHHHhhhhhhhc
Confidence 34566777899999999999999999999999999999999999999999999999999864
No 18
>1puf_A HOX-1.7, homeobox protein HOX-A9; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Mus musculus} SCOP: a.4.1.1 PDB: 1san_A
Probab=99.72 E-value=1.4e-17 Score=126.04 Aligned_cols=62 Identities=37% Similarity=0.487 Sum_probs=57.7
Q ss_pred CCCCCCCcCCHHHHHHHHhhhhccCCCCHHHHHHHHHHhCCChhhhhhHhhhhHHHHHHHHH
Q 022964 48 HQPEKKRRLTVDQVQFLEKSFEVENKLEPERKIQLAKDLGLQPRQVAIWFQNRRARWKTKQL 109 (289)
Q Consensus 48 ~~~rkR~R~T~eQl~~LE~~F~~~~~P~~~~r~~LA~~LgLs~rQVkvWFQNRRak~Krk~~ 109 (289)
..+++|++||..|+..||..|..++||+..++..||..|||+++||++||||||+|+|+...
T Consensus 12 ~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~k 73 (77)
T 1puf_A 12 STRKKRCPYTKHQTLELEKEFLFNMYLTRDRRYEVARLLNLTERQVKIWFQNRRMKMKKINK 73 (77)
T ss_dssp TTSCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHhhh
Confidence 45667778999999999999999999999999999999999999999999999999998653
No 19
>2djn_A Homeobox protein DLX-5; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.72 E-value=4.9e-18 Score=126.30 Aligned_cols=62 Identities=29% Similarity=0.445 Sum_probs=57.7
Q ss_pred CCCCCCCCcCCHHHHHHHHhhhhccCCCCHHHHHHHHHHhCCChhhhhhHhhhhHHHHHHHH
Q 022964 47 FHQPEKKRRLTVDQVQFLEKSFEVENKLEPERKIQLAKDLGLQPRQVAIWFQNRRARWKTKQ 108 (289)
Q Consensus 47 ~~~~rkR~R~T~eQl~~LE~~F~~~~~P~~~~r~~LA~~LgLs~rQVkvWFQNRRak~Krk~ 108 (289)
...+++|++||..|+..||..|..++||+..++..||..|||+++||++||||||+|+|+..
T Consensus 5 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~ 66 (70)
T 2djn_A 5 SSGRKPRTIYSSFQLAALQRRFQKTQYLALPERAELAASLGLTQTQVKIWFQNKRSKIKKSG 66 (70)
T ss_dssp CCCCCSSCSSCHHHHHHHHHHHTTCSSCCHHHHHHHHHHSSCCHHHHHHHHHHHHHTCSSSS
T ss_pred CCCCCCCCCCCHHHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCHHHHHHHHHHHhhhhcccC
Confidence 35567788899999999999999999999999999999999999999999999999999853
No 20
>2da1_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.72 E-value=4.4e-18 Score=126.28 Aligned_cols=62 Identities=23% Similarity=0.406 Sum_probs=57.7
Q ss_pred CCCCCCCCcCCHHHHHHHHhhhhccCCCCHHHHHHHHHHhCCChhhhhhHhhhhHHHHHHHH
Q 022964 47 FHQPEKKRRLTVDQVQFLEKSFEVENKLEPERKIQLAKDLGLQPRQVAIWFQNRRARWKTKQ 108 (289)
Q Consensus 47 ~~~~rkR~R~T~eQl~~LE~~F~~~~~P~~~~r~~LA~~LgLs~rQVkvWFQNRRak~Krk~ 108 (289)
...+++|++||.+|+..||..|..++||+..++..||..|||+++||++||||||+|+|+..
T Consensus 5 ~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kk~~ 66 (70)
T 2da1_A 5 SSGKRPRTRITDDQLRVLRQYFDINNSPSEEQIKEMADKSGLPQKVIKHWFRNTLFKERQSG 66 (70)
T ss_dssp CCCCSCSCCCCHHHHHHHHHHHHHCSSCCTTHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHhCCCHHHHHHHhhhhhHHHhhhc
Confidence 35567788899999999999999999999999999999999999999999999999999854
No 21
>1zq3_P PRD-4, homeotic bicoid protein; protein-DNA complex, double helix, helix-turn-helix; NMR {Drosophila melanogaster} SCOP: a.4.1.1
Probab=99.72 E-value=9.2e-18 Score=124.26 Aligned_cols=61 Identities=33% Similarity=0.461 Sum_probs=57.2
Q ss_pred CCCCCCcCCHHHHHHHHhhhhccCCCCHHHHHHHHHHhCCChhhhhhHhhhhHHHHHHHHH
Q 022964 49 QPEKKRRLTVDQVQFLEKSFEVENKLEPERKIQLAKDLGLQPRQVAIWFQNRRARWKTKQL 109 (289)
Q Consensus 49 ~~rkR~R~T~eQl~~LE~~F~~~~~P~~~~r~~LA~~LgLs~rQVkvWFQNRRak~Krk~~ 109 (289)
++++|++||..|+..||..|..++||+..++..||..|||+++||++||||||+|+|+...
T Consensus 2 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNRR~k~kk~~~ 62 (68)
T 1zq3_P 2 PRRTRTTFTSSQIAELEQHFLQGRYLTAPRLADLSAKLALGTAQVKIWFKNRRRRHKIQSD 62 (68)
T ss_dssp CSCCSCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCCCcCHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCcCHHHhhHhhHHHHHHHHHHhc
Confidence 4567788999999999999999999999999999999999999999999999999998653
No 22
>2r5y_A Homeotic protein sex combs reduced; homeodomain; HET: DNA; 2.60A {Drosophila melanogaster} PDB: 2r5z_A*
Probab=99.72 E-value=9.2e-18 Score=130.16 Aligned_cols=62 Identities=37% Similarity=0.601 Sum_probs=54.4
Q ss_pred cCCCCCCCCcCCHHHHHHHHhhhhccCCCCHHHHHHHHHHhCCChhhhhhHhhhhHHHHHHH
Q 022964 46 YFHQPEKKRRLTVDQVQFLEKSFEVENKLEPERKIQLAKDLGLQPRQVAIWFQNRRARWKTK 107 (289)
Q Consensus 46 ~~~~~rkR~R~T~eQl~~LE~~F~~~~~P~~~~r~~LA~~LgLs~rQVkvWFQNRRak~Krk 107 (289)
....+++|++||..|+..||..|..++||+..++..||..|||+++||++||||||+|+|+.
T Consensus 25 ~~~~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~vWFqNRR~k~kk~ 86 (88)
T 2r5y_A 25 NGETKRQRTSYTRYQTLELEKEFHFNRYLTRRRRIEIAHALSLTERQIKIWFQNRRMKWKKE 86 (88)
T ss_dssp ------CCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTT
T ss_pred CCCCCCCCCCcCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCcCHHHhhHHhHHHHHHhHhh
Confidence 34566778889999999999999999999999999999999999999999999999999985
No 23
>1bw5_A ISL-1HD, insulin gene enhancer protein ISL-1; DNA-binding protein, homeodomain, LIM domain; NMR {Rattus norvegicus} SCOP: a.4.1.1
Probab=99.72 E-value=4.5e-18 Score=125.01 Aligned_cols=60 Identities=27% Similarity=0.475 Sum_probs=56.7
Q ss_pred CCCCCCcCCHHHHHHHHhhhhccCCCCHHHHHHHHHHhCCChhhhhhHhhhhHHHHHHHH
Q 022964 49 QPEKKRRLTVDQVQFLEKSFEVENKLEPERKIQLAKDLGLQPRQVAIWFQNRRARWKTKQ 108 (289)
Q Consensus 49 ~~rkR~R~T~eQl~~LE~~F~~~~~P~~~~r~~LA~~LgLs~rQVkvWFQNRRak~Krk~ 108 (289)
.+++|++||.+|+..||..|..++||+..++..||..|||+++||++||||||+|+|++.
T Consensus 3 ~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~ 62 (66)
T 1bw5_A 3 TTRVRTVLNEKQLHTLRTCYAANPRPDALMKEQLVEMTGLSPRVIRVWFQNKRCKDKKRS 62 (66)
T ss_dssp CSCCCCCCSHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHCSSCC
T ss_pred CCCCCCCCCHHHHHHHHHHHhcCCCcCHHHHHHHHHHHCcCHHHHHHHhHHHHHHHhHHh
Confidence 467778899999999999999999999999999999999999999999999999999864
No 24
>1ahd_P Antennapedia protein mutant; DNA binding protein/DNA; HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 2hoa_A 1hom_A 1ftz_A
Probab=99.71 E-value=6.3e-18 Score=125.25 Aligned_cols=60 Identities=38% Similarity=0.663 Sum_probs=56.7
Q ss_pred CCCCCCcCCHHHHHHHHhhhhccCCCCHHHHHHHHHHhCCChhhhhhHhhhhHHHHHHHH
Q 022964 49 QPEKKRRLTVDQVQFLEKSFEVENKLEPERKIQLAKDLGLQPRQVAIWFQNRRARWKTKQ 108 (289)
Q Consensus 49 ~~rkR~R~T~eQl~~LE~~F~~~~~P~~~~r~~LA~~LgLs~rQVkvWFQNRRak~Krk~ 108 (289)
++++|++||..|+..||..|..++||+..++..||..|||+++||++||||||+|+|+..
T Consensus 2 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~vWFqNRR~k~kk~~ 61 (68)
T 1ahd_P 2 RKRGRQTYTRYQTLELEKEFHFNRYLTRRRRIEIAHALSLTERQIKIWFQNRRMKWKKEN 61 (68)
T ss_dssp CSCTTCCCCHHHHHHHHHHHHHCSSCCTTHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHS
T ss_pred CCCCCCCcCHHHHHHHHHHHccCCCCCHHHHHHHHHHHCcCHhhhhHHhHHHHhHHhHhc
Confidence 356778899999999999999999999999999999999999999999999999999864
No 25
>2l7z_A Homeobox protein HOX-A13; gene regulation; NMR {Homo sapiens} PDB: 2ld5_A*
Probab=99.71 E-value=1.1e-17 Score=125.55 Aligned_cols=62 Identities=27% Similarity=0.458 Sum_probs=57.7
Q ss_pred CCCCCCCCcCCHHHHHHHHhhhhccCCCCHHHHHHHHHHhCCChhhhhhHhhhhHHHHHHHH
Q 022964 47 FHQPEKKRRLTVDQVQFLEKSFEVENKLEPERKIQLAKDLGLQPRQVAIWFQNRRARWKTKQ 108 (289)
Q Consensus 47 ~~~~rkR~R~T~eQl~~LE~~F~~~~~P~~~~r~~LA~~LgLs~rQVkvWFQNRRak~Krk~ 108 (289)
...+++|++||..|+..||..|..++||+..++..||..|||+++||++||||||+|+|+..
T Consensus 5 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~ 66 (73)
T 2l7z_A 5 LEGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKKVI 66 (73)
T ss_dssp SCCCCCCCCSCHHHHHHHHHHHHHTSCCCHHHHHHHHHHHTSCSHHHHHHHHHHHHHHTTSS
T ss_pred CCCCCCCCCCCHHHHHHHHHHHhhCCCcCHHHHHHHHHHHCCCHHHHHHHHHHHhHHHHHHh
Confidence 34567788899999999999999999999999999999999999999999999999999854
No 26
>1jgg_A Segmentation protein EVEN-skipped; homeodomain, protein-DNA complex, transcription/DNA complex; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1
Probab=99.71 E-value=9.2e-18 Score=121.15 Aligned_cols=58 Identities=36% Similarity=0.535 Sum_probs=54.8
Q ss_pred CCCCCcCCHHHHHHHHhhhhccCCCCHHHHHHHHHHhCCChhhhhhHhhhhHHHHHHH
Q 022964 50 PEKKRRLTVDQVQFLEKSFEVENKLEPERKIQLAKDLGLQPRQVAIWFQNRRARWKTK 107 (289)
Q Consensus 50 ~rkR~R~T~eQl~~LE~~F~~~~~P~~~~r~~LA~~LgLs~rQVkvWFQNRRak~Krk 107 (289)
+++|++||..|+..||..|..++||+..++..||..|||+++||++||||||+|+|++
T Consensus 2 rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kr~ 59 (60)
T 1jgg_A 2 RRYRTAFTRDQLGRLEKEFYKENYVSRPRRCELAAQLNLPESTIKVWFQNRRMKDKRQ 59 (60)
T ss_dssp -CCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHC
T ss_pred CCCCCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHCcCHHHHHHhhHHHHhHhhcc
Confidence 4678889999999999999999999999999999999999999999999999999974
No 27
>1wh5_A ZF-HD homeobox family protein; structural genomics, zinc finger homeobox family protein, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.4.1.1
Probab=99.71 E-value=7.5e-18 Score=129.14 Aligned_cols=60 Identities=12% Similarity=0.228 Sum_probs=55.8
Q ss_pred CCCCCCCCcCCHHHHHHHHhhhhc----cCCCCHHHHHHHHHHhCCChhhhhhHhhhhHHHHHH
Q 022964 47 FHQPEKKRRLTVDQVQFLEKSFEV----ENKLEPERKIQLAKDLGLQPRQVAIWFQNRRARWKT 106 (289)
Q Consensus 47 ~~~~rkR~R~T~eQl~~LE~~F~~----~~~P~~~~r~~LA~~LgLs~rQVkvWFQNRRak~Kr 106 (289)
..++|+|+.||.+|+..||..|+. ++||+..+|.+||..|||+++||+|||||||+|+|+
T Consensus 15 ~~~rR~Rt~ft~~Ql~~Le~~f~~~~~~~~yp~~~~r~~La~~lgL~~~~VkvWFqNrRaK~~~ 78 (80)
T 1wh5_A 15 GIRKRHRTKFTAEQKERMLALAERIGWRIQRQDDEVIQRFCQETGVPRQVLKVWLHNNKHSGPS 78 (80)
T ss_dssp CCSCCCSCCCCHHHHHHHHHHHHHHTSCCCTTTHHHHHHHHHHSCCCHHHHHHHHHHHSSSSSC
T ss_pred CCCCCCCccCCHHHHHHHHHHHHhccCcCCCcCHHHHHHHHHHhCCCcccccCCccccCcCCCC
Confidence 355667778999999999999999 999999999999999999999999999999999885
No 28
>1yz8_P Pituitary homeobox 2; DNA binding protein, transcription/DNA complex; NMR {Homo sapiens} SCOP: a.4.1.1 PDB: 2l7f_P 2lkx_A* 2l7m_P
Probab=99.71 E-value=4.5e-18 Score=125.83 Aligned_cols=61 Identities=28% Similarity=0.547 Sum_probs=57.5
Q ss_pred CCCCCCCcCCHHHHHHHHhhhhccCCCCHHHHHHHHHHhCCChhhhhhHhhhhHHHHHHHH
Q 022964 48 HQPEKKRRLTVDQVQFLEKSFEVENKLEPERKIQLAKDLGLQPRQVAIWFQNRRARWKTKQ 108 (289)
Q Consensus 48 ~~~rkR~R~T~eQl~~LE~~F~~~~~P~~~~r~~LA~~LgLs~rQVkvWFQNRRak~Krk~ 108 (289)
.++++|++||..|+..||..|..++||+..++..||..|||+++||++||||||+|+|+..
T Consensus 2 ~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~rk~~ 62 (68)
T 1yz8_P 2 SQRRQRTHFTSQQLQQLEATFQRNRYPDMSTREEIAVWTNLTEARVRVWFKNRRAKWRKRE 62 (68)
T ss_dssp CSSCSCCCCCHHHHHHHHHHHTTCSSCCTTTTTHHHHHTTSCHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCcCHHHHHHHHHHHhHHHHHHh
Confidence 4567788899999999999999999999999999999999999999999999999999865
No 29
>1uhs_A HOP, homeodomain only protein; structural genomics, cardiac development, riken structural genomics/proteomics initiative, RSGI, transcription; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.71 E-value=1.5e-17 Score=124.30 Aligned_cols=59 Identities=31% Similarity=0.570 Sum_probs=55.6
Q ss_pred CCCCCcCCHHHHHHHHhhhhc-cCCCCHHHHHHHHHHhCCChhhhhhHhhhhHHHHHHHH
Q 022964 50 PEKKRRLTVDQVQFLEKSFEV-ENKLEPERKIQLAKDLGLQPRQVAIWFQNRRARWKTKQ 108 (289)
Q Consensus 50 ~rkR~R~T~eQl~~LE~~F~~-~~~P~~~~r~~LA~~LgLs~rQVkvWFQNRRak~Krk~ 108 (289)
.++|++||..|+..||..|.. ++||+..++..||..|||+++||++||||||+|+|+..
T Consensus 2 ~k~Rt~ft~~Q~~~Le~~F~~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~rk~~ 61 (72)
T 1uhs_A 2 SEGAATMTEDQVEILEYNFNKVNKHPDPTTLCLIAAEAGLTEEQTQKWFKQRLAEWRRSE 61 (72)
T ss_dssp CCCCCCCCHHHHHHHHHHHHSSCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCccCCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHCcCHHHhhHHhHHHHHHHhhhc
Confidence 457788999999999999996 99999999999999999999999999999999999865
No 30
>3rkq_A Homeobox protein NKX-2.5; helix-turn-helix, DNA binding, nucleus, transcription-DNA CO; 1.70A {Homo sapiens}
Probab=99.71 E-value=1.3e-17 Score=118.69 Aligned_cols=57 Identities=37% Similarity=0.483 Sum_probs=53.9
Q ss_pred CCCCCCcCCHHHHHHHHhhhhccCCCCHHHHHHHHHHhCCChhhhhhHhhhhHHHHH
Q 022964 49 QPEKKRRLTVDQVQFLEKSFEVENKLEPERKIQLAKDLGLQPRQVAIWFQNRRARWK 105 (289)
Q Consensus 49 ~~rkR~R~T~eQl~~LE~~F~~~~~P~~~~r~~LA~~LgLs~rQVkvWFQNRRak~K 105 (289)
++++|++||..|+..||..|..++||+..++..||..|||+++||++||||||+|+|
T Consensus 2 ~rr~Rt~~t~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~k 58 (58)
T 3rkq_A 2 RRKPRVLFSQAQVYELERRFKQQRYLSAPERDQLASVLKLTSTQVKIWFQNRRYKSK 58 (58)
T ss_dssp CCCCCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHC
T ss_pred cCCCCCCcCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCcCHHHHHHhhHHhhccCC
Confidence 356778899999999999999999999999999999999999999999999999986
No 31
>2da5_A Zinc fingers and homeoboxes protein 3; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.71 E-value=1.1e-17 Score=126.21 Aligned_cols=59 Identities=24% Similarity=0.400 Sum_probs=55.8
Q ss_pred CCCCCcCCHHHHHHHHhhhhccCCCCHHHHHHHHHHhCCChhhhhhHhhhhHHHHHHHH
Q 022964 50 PEKKRRLTVDQVQFLEKSFEVENKLEPERKIQLAKDLGLQPRQVAIWFQNRRARWKTKQ 108 (289)
Q Consensus 50 ~rkR~R~T~eQl~~LE~~F~~~~~P~~~~r~~LA~~LgLs~rQVkvWFQNRRak~Krk~ 108 (289)
+++|++||.+|+..||..|..++||+..++..||..|||+++||++||||||+|+|++.
T Consensus 8 ~~kr~~~t~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kk~~ 66 (75)
T 2da5_A 8 PTKYKERAPEQLRALESSFAQNPLPLDEELDRLRSETKMTRREIDSWFSERRKKVNAEE 66 (75)
T ss_dssp SCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHTTHHHHSS
T ss_pred CCCCccCCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCCCHHHhhHhhHHHHHHHHHhh
Confidence 45677899999999999999999999999999999999999999999999999999864
No 32
>2da4_A Hypothetical protein DKFZP686K21156; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.71 E-value=6.6e-18 Score=128.65 Aligned_cols=61 Identities=16% Similarity=0.311 Sum_probs=57.0
Q ss_pred CCCCCCCcCCHHHHHHHHhhhhcc----CCCCHHHHHHHHHHhCCChhhhhhHhhhhHHHHHHHH
Q 022964 48 HQPEKKRRLTVDQVQFLEKSFEVE----NKLEPERKIQLAKDLGLQPRQVAIWFQNRRARWKTKQ 108 (289)
Q Consensus 48 ~~~rkR~R~T~eQl~~LE~~F~~~----~~P~~~~r~~LA~~LgLs~rQVkvWFQNRRak~Krk~ 108 (289)
..+++|+.||.+|+..||..|..+ +||+..++..||.+|||+++||+|||||||+|+|+..
T Consensus 7 ~~rr~Rt~ft~~Q~~~Le~~F~~~~~~~~yp~~~~r~~La~~lgL~~~qV~vWFqNrR~k~rk~~ 71 (80)
T 2da4_A 7 GALQDRTQFSDRDLATLKKYWDNGMTSLGSVCREKIEAVATELNVDCEIVRTWIGNRRRKYRLMG 71 (80)
T ss_dssp CCCCSSCCCCHHHHHHHHHHHTTTTTCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCCCCHHHHHHHHHHHHhCCCCCCCcCHHHHHHHHHHhCCCHHHhhHhHHHHHHHHhhcc
Confidence 456677789999999999999999 9999999999999999999999999999999999854
No 33
>2ecc_A Homeobox and leucine zipper protein homez; homeobox domain, transcription factor, leucine zipper- containing factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.71 E-value=1.1e-17 Score=127.52 Aligned_cols=59 Identities=25% Similarity=0.311 Sum_probs=55.6
Q ss_pred CCCCcCCHHHHHHHHhhhhccCCCCHHHHHHHHHHhCCChhhhhhHhhhhHHHHHHHHH
Q 022964 51 EKKRRLTVDQVQFLEKSFEVENKLEPERKIQLAKDLGLQPRQVAIWFQNRRARWKTKQL 109 (289)
Q Consensus 51 rkR~R~T~eQl~~LE~~F~~~~~P~~~~r~~LA~~LgLs~rQVkvWFQNRRak~Krk~~ 109 (289)
.+|++||.+|+.+||..|..++||+..+|.+||..|||+.+||++||||||+|+|+.++
T Consensus 5 ~~r~kfT~~Ql~~Le~~F~~~~YPs~~er~~LA~~tgLte~qIkvWFqNrR~k~Kk~~l 63 (76)
T 2ecc_A 5 SSGKRKTKEQLAILKSFFLQCQWARREDYQKLEQITGLPRPEIIQWFGDTRYALKHGQL 63 (76)
T ss_dssp CCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHTCC
T ss_pred CCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCcCHHHhhHHhHhhHHHHHHHHH
Confidence 45677999999999999999999999999999999999999999999999999998654
No 34
>1ftt_A TTF-1 HD, thyroid transcription factor 1 homeodomain; DNA binding protein; NMR {Rattus norvegicus} SCOP: a.4.1.1
Probab=99.71 E-value=1.3e-17 Score=123.36 Aligned_cols=61 Identities=31% Similarity=0.486 Sum_probs=56.9
Q ss_pred CCCCCCcCCHHHHHHHHhhhhccCCCCHHHHHHHHHHhCCChhhhhhHhhhhHHHHHHHHH
Q 022964 49 QPEKKRRLTVDQVQFLEKSFEVENKLEPERKIQLAKDLGLQPRQVAIWFQNRRARWKTKQL 109 (289)
Q Consensus 49 ~~rkR~R~T~eQl~~LE~~F~~~~~P~~~~r~~LA~~LgLs~rQVkvWFQNRRak~Krk~~ 109 (289)
++++|++||..|+..||..|..++||+..++..||..|||+++||++||||||+|+|+...
T Consensus 2 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kr~~~ 62 (68)
T 1ftt_A 2 RRKRRVLFSQAQVYELERRFKQQKYLSAPEREHLASMIHLTPTQVKIWFQNHRYKMKRQAK 62 (68)
T ss_dssp CSSSCSSCCHHHHHHHHHHHHHSSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTTS
T ss_pred CCCCCCccCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCHHHhHHHhHHHhhhhhhhhh
Confidence 3567778999999999999999999999999999999999999999999999999998653
No 35
>2k40_A Homeobox expressed in ES cells 1; thermostable homeodomain variant, DNA binding protein, developmental protein, disease mutation, DNA-binding; NMR {Homo sapiens}
Probab=99.71 E-value=1.1e-17 Score=123.34 Aligned_cols=61 Identities=33% Similarity=0.498 Sum_probs=57.3
Q ss_pred CCCCCcCCHHHHHHHHhhhhccCCCCHHHHHHHHHHhCCChhhhhhHhhhhHHHHHHHHHH
Q 022964 50 PEKKRRLTVDQVQFLEKSFEVENKLEPERKIQLAKDLGLQPRQVAIWFQNRRARWKTKQLE 110 (289)
Q Consensus 50 ~rkR~R~T~eQl~~LE~~F~~~~~P~~~~r~~LA~~LgLs~rQVkvWFQNRRak~Krk~~e 110 (289)
+++|++||..|+..||..|..++||+..++..||..|||+++||++||||||+|+|+...+
T Consensus 2 rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kr~~~~ 62 (67)
T 2k40_A 2 RRPRTAFTQNQIEVLENVFRVNCYPGIDILEDLAQKLNLELDRIQIWFQNRRAKLKRSHRE 62 (67)
T ss_dssp CCCSCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHCSCCT
T ss_pred cCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCcCHHHhhHhhHhHHHHHhHhchh
Confidence 5678889999999999999999999999999999999999999999999999999986543
No 36
>2m0c_A Homeobox protein aristaless-like 4; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.70 E-value=1.8e-17 Score=124.12 Aligned_cols=62 Identities=31% Similarity=0.507 Sum_probs=57.6
Q ss_pred CCCCCCCCcCCHHHHHHHHhhhhccCCCCHHHHHHHHHHhCCChhhhhhHhhhhHHHHHHHH
Q 022964 47 FHQPEKKRRLTVDQVQFLEKSFEVENKLEPERKIQLAKDLGLQPRQVAIWFQNRRARWKTKQ 108 (289)
Q Consensus 47 ~~~~rkR~R~T~eQl~~LE~~F~~~~~P~~~~r~~LA~~LgLs~rQVkvWFQNRRak~Krk~ 108 (289)
..+++.|++||..|+..||..|..++||+..++..||..|||+++||++||||||+|+|++.
T Consensus 7 ~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~ 68 (75)
T 2m0c_A 7 GKKRRNRTTFTSYQLEELEKVFQKTHYPDVYAREQLAMRTDLTEARVQVWFQNRRAKWRKRE 68 (75)
T ss_dssp SCCCSCSCSSCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTCCC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCHHHHHHHhHHHHHHHHHHH
Confidence 45566777899999999999999999999999999999999999999999999999999864
No 37
>1b8i_A Ultrabithorax, protein (ultrabithorax homeotic protein IV); DNA binding, homeodomain, homeotic proteins, development, specificity; HET: DNA; 2.40A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 9ant_A*
Probab=99.70 E-value=1.1e-17 Score=128.14 Aligned_cols=61 Identities=36% Similarity=0.549 Sum_probs=54.1
Q ss_pred CCCCCCCcCCHHHHHHHHhhhhccCCCCHHHHHHHHHHhCCChhhhhhHhhhhHHHHHHHH
Q 022964 48 HQPEKKRRLTVDQVQFLEKSFEVENKLEPERKIQLAKDLGLQPRQVAIWFQNRRARWKTKQ 108 (289)
Q Consensus 48 ~~~rkR~R~T~eQl~~LE~~F~~~~~P~~~~r~~LA~~LgLs~rQVkvWFQNRRak~Krk~ 108 (289)
..+++|++||..|+..||..|..++||+..++..||..|||+++||++||||||+|+|+..
T Consensus 19 ~~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~ 79 (81)
T 1b8i_A 19 LRRRGRQTYTRYQTLELEKEFHTNHYLTRRRRIEMAHALSLTERQIKIWFQNRRMKLKKEI 79 (81)
T ss_dssp -----CCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHTTC
T ss_pred CCCCCCcccCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCHHHHHHHhHHhhhhhhhhc
Confidence 4567788899999999999999999999999999999999999999999999999999853
No 38
>2hi3_A Homeodomain-only protein; transcription; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.70 E-value=2.1e-17 Score=123.87 Aligned_cols=59 Identities=29% Similarity=0.527 Sum_probs=55.5
Q ss_pred CCCCCcCCHHHHHHHHhhhhc-cCCCCHHHHHHHHHHhCCChhhhhhHhhhhHHHHHHHH
Q 022964 50 PEKKRRLTVDQVQFLEKSFEV-ENKLEPERKIQLAKDLGLQPRQVAIWFQNRRARWKTKQ 108 (289)
Q Consensus 50 ~rkR~R~T~eQl~~LE~~F~~-~~~P~~~~r~~LA~~LgLs~rQVkvWFQNRRak~Krk~ 108 (289)
+++|++||..|+..||..|.. ++||+..++..||..|||+++||++||||||+|+|+..
T Consensus 3 ~k~Rt~ft~~Q~~~Le~~F~~~~~yp~~~~r~~LA~~~~l~~~qV~~WFqNRR~k~rk~~ 62 (73)
T 2hi3_A 3 AQTVSGPTEDQVEILEYNFNKVNKHPDPTTLCLIAAEAGLTEEQTQKWFKQRLAEWRRSE 62 (73)
T ss_dssp CSCCSSCCHHHHHHHHHHHHHTTSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHhc
Confidence 466788999999999999995 99999999999999999999999999999999999865
No 39
>1wh7_A ZF-HD homeobox family protein; homeobox domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: a.4.1.1
Probab=99.70 E-value=1.1e-17 Score=128.36 Aligned_cols=59 Identities=15% Similarity=0.252 Sum_probs=54.6
Q ss_pred CCCCCCCCcCCHHHHHHHHhhhhc-----cCCCCHHHHHHHHHHhCCChhhhhhHhhhhHHHHHH
Q 022964 47 FHQPEKKRRLTVDQVQFLEKSFEV-----ENKLEPERKIQLAKDLGLQPRQVAIWFQNRRARWKT 106 (289)
Q Consensus 47 ~~~~rkR~R~T~eQl~~LE~~F~~-----~~~P~~~~r~~LA~~LgLs~rQVkvWFQNRRak~Kr 106 (289)
..++|+|+.||.+|+..|| .|.. ++||+..+|.+||.+|||+++||+|||||||+|+|+
T Consensus 15 ~~~rR~Rt~ft~~Ql~~Le-~F~~~~~w~~~yp~~~~r~~La~~lgL~e~qVkvWFqNrR~k~~~ 78 (80)
T 1wh7_A 15 GTTKRFRTKFTAEQKEKML-AFAERLGWRIQKHDDVAVEQFCAETGVRRQVLKIWMHNNKNSGPS 78 (80)
T ss_dssp CCSSCCCCCCCHHHHHHHH-HHHHHHTSCCCSSTTHHHHHHHHHSCCCHHHHHHHHHTTSCCSCC
T ss_pred CCCCCCCccCCHHHHHHHH-HHHHHcCcCCCCCCHHHHHHHHHHhCcCcCcccccccccccCCCC
Confidence 3556777789999999999 7999 999999999999999999999999999999999885
No 40
>3a03_A T-cell leukemia homeobox protein 2; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.54A {Homo sapiens}
Probab=99.70 E-value=2.2e-17 Score=117.87 Aligned_cols=54 Identities=35% Similarity=0.611 Sum_probs=50.9
Q ss_pred CcCCHHHHHHHHhhhhccCCCCHHHHHHHHHHhCCChhhhhhHhhhhHHHHHHH
Q 022964 54 RRLTVDQVQFLEKSFEVENKLEPERKIQLAKDLGLQPRQVAIWFQNRRARWKTK 107 (289)
Q Consensus 54 ~R~T~eQl~~LE~~F~~~~~P~~~~r~~LA~~LgLs~rQVkvWFQNRRak~Krk 107 (289)
+.||..|+..||..|..++||+..++..||..|||+++||++||||||+|+|++
T Consensus 2 T~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kr~ 55 (56)
T 3a03_A 2 TSFSRSQVLELERRFLRQKYLASAERAALAKALRMTDAQVKTWFQNRRTKWRRQ 55 (56)
T ss_dssp --CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred CccCHHHHHHHHHHHHhcCCcCHHHHHHHHHHhCcCHHHhhHhhHHhhhhhccc
Confidence 469999999999999999999999999999999999999999999999999984
No 41
>1akh_A Protein (mating-type protein A-1); complex (TWO DNA-binding proteins/DNA), complex, DNA- binding protein, DNA; HET: DNA; 2.50A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1f43_A 1yrn_A*
Probab=99.69 E-value=1.5e-17 Score=120.15 Aligned_cols=58 Identities=34% Similarity=0.620 Sum_probs=48.6
Q ss_pred CCCCCCCcCCHHHHHHHHhhhhccCCCCHHHHHHHHHHhCCChhhhhhHhhhhHHHHH
Q 022964 48 HQPEKKRRLTVDQVQFLEKSFEVENKLEPERKIQLAKDLGLQPRQVAIWFQNRRARWK 105 (289)
Q Consensus 48 ~~~rkR~R~T~eQl~~LE~~F~~~~~P~~~~r~~LA~~LgLs~rQVkvWFQNRRak~K 105 (289)
..+++|++||..|+..||..|..++||+..++..||..|||++.||++||||||+|+|
T Consensus 4 k~rr~Rt~ft~~q~~~Le~~f~~~~yp~~~~r~~La~~~~l~~~qV~~WFqNrR~k~k 61 (61)
T 1akh_A 4 KSPKGKSSISPQARAFLEEVFRRKQSLNSKEKEEVAKKCGITPLQVRVWFINKRMRSK 61 (61)
T ss_dssp --------CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-
T ss_pred CCCCCCCCCCHHHHHHHHHHHHhCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHhccC
Confidence 3456677899999999999999999999999999999999999999999999999986
No 42
>3a02_A Homeobox protein aristaless; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.00A {Drosophila melanogaster} PDB: 3lnq_A 3cmy_A
Probab=99.69 E-value=1.9e-17 Score=119.48 Aligned_cols=57 Identities=32% Similarity=0.586 Sum_probs=50.6
Q ss_pred CCCcCCHHHHHHHHhhhhccCCCCHHHHHHHHHHhCCChhhhhhHhhhhHHHHHHHH
Q 022964 52 KKRRLTVDQVQFLEKSFEVENKLEPERKIQLAKDLGLQPRQVAIWFQNRRARWKTKQ 108 (289)
Q Consensus 52 kR~R~T~eQl~~LE~~F~~~~~P~~~~r~~LA~~LgLs~rQVkvWFQNRRak~Krk~ 108 (289)
.|++||..|+..||..|..++||+..++..||..|||+++||++||||||+|+|+..
T Consensus 2 ~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~rk~~ 58 (60)
T 3a02_A 2 SHMTFTSFQLEELEKAFSRTHYPDVFTREELAMKIGLTEARIQVWFQNRRAKWRKQE 58 (60)
T ss_dssp ---CCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHC---
T ss_pred CCcccCHHHHHHHHHHHHcCCCcCHHHHHHHHHHHCcCHHHHHHHhhhhhhhhHhhc
Confidence 367899999999999999999999999999999999999999999999999999854
No 43
>2dn0_A Zinc fingers and homeoboxes protein 3; triple homeobox 1 protein, KIAA0395, TIX1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.69 E-value=1.8e-17 Score=125.18 Aligned_cols=60 Identities=25% Similarity=0.331 Sum_probs=56.1
Q ss_pred CCCCCCcCCHHHHHHHHhhhhccCCCCHHHHHHHHHHhCCChhhhhhHhhhhHHHHHHHH
Q 022964 49 QPEKKRRLTVDQVQFLEKSFEVENKLEPERKIQLAKDLGLQPRQVAIWFQNRRARWKTKQ 108 (289)
Q Consensus 49 ~~rkR~R~T~eQl~~LE~~F~~~~~P~~~~r~~LA~~LgLs~rQVkvWFQNRRak~Krk~ 108 (289)
..+.|++||.+|+..||..|..++||+..++..||..|||+++||++||||||+|+|+..
T Consensus 8 ~~~~R~~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~~~l~~~qV~~WFqNrR~k~kk~~ 67 (76)
T 2dn0_A 8 ASIYKNKKSHEQLSALKGSFCRNQFPGQSEVEHLTKVTGLSTREVRKWFSDRRYHCRNLK 67 (76)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHHSSSCCSHHHHHHHHHHCCCHHHHHHHHHHHHHHSSSCC
T ss_pred CCCCCccCCHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCCChHHhhHHhHHHhHHHHHhc
Confidence 345678899999999999999999999999999999999999999999999999999854
No 44
>1b72_A Protein (homeobox protein HOX-B1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1
Probab=99.69 E-value=3.1e-17 Score=129.47 Aligned_cols=63 Identities=33% Similarity=0.512 Sum_probs=55.5
Q ss_pred CCCCCCCCcCCHHHHHHHHhhhhccCCCCHHHHHHHHHHhCCChhhhhhHhhhhHHHHHHHHH
Q 022964 47 FHQPEKKRRLTVDQVQFLEKSFEVENKLEPERKIQLAKDLGLQPRQVAIWFQNRRARWKTKQL 109 (289)
Q Consensus 47 ~~~~rkR~R~T~eQl~~LE~~F~~~~~P~~~~r~~LA~~LgLs~rQVkvWFQNRRak~Krk~~ 109 (289)
...+++|++||..|+..||..|..++||+..++..||..|||+++||++||||||+|+|+...
T Consensus 32 ~~~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~~ 94 (97)
T 1b72_A 32 GSPSGLRTNFTTRQLTELEKEFHFNKYLSRARRVEIAATLELNETQVKIWFQNRRMKQKKRER 94 (97)
T ss_dssp -----CCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCcCcCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCCCHHHhHHHHHHHhHHHhHHhc
Confidence 355677888999999999999999999999999999999999999999999999999998653
No 45
>3nar_A ZHX1, zinc fingers and homeoboxes protein 1; corepressor, homeodomain, structural genomics, oxford production facility, OPPF, transcription; 2.60A {Homo sapiens}
Probab=99.69 E-value=2.2e-17 Score=130.11 Aligned_cols=63 Identities=29% Similarity=0.470 Sum_probs=56.9
Q ss_pred CCCCCCCcCCHHHHHHHHhhhhccCCCCHHHHHHHHHHhCCChhhhhhHhhhhHHHHHHHHHH
Q 022964 48 HQPEKKRRLTVDQVQFLEKSFEVENKLEPERKIQLAKDLGLQPRQVAIWFQNRRARWKTKQLE 110 (289)
Q Consensus 48 ~~~rkR~R~T~eQl~~LE~~F~~~~~P~~~~r~~LA~~LgLs~rQVkvWFQNRRak~Krk~~e 110 (289)
..+++|++||..|+..||..|..++||+..++..||.+|||+++||++||||||+|+|+.++.
T Consensus 24 ~~~r~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kk~~lk 86 (96)
T 3nar_A 24 GSTGKICKKTPEQLHMLKSAFVRTQWPSPEEYDKLAKESGLARTDIVSWFGDTRYAWKNGNLK 86 (96)
T ss_dssp ---CCSSSSCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTTCCH
T ss_pred CCCCCCccCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCCCHHHeeecchhhhhHhhhhccc
Confidence 345677889999999999999999999999999999999999999999999999999997644
No 46
>1x2n_A Homeobox protein pknox1; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.68 E-value=5.6e-17 Score=121.34 Aligned_cols=62 Identities=21% Similarity=0.190 Sum_probs=57.1
Q ss_pred CCCCCCCcCCHHHHHHHHhhhhc---cCCCCHHHHHHHHHHhCCChhhhhhHhhhhHHHHHHHHH
Q 022964 48 HQPEKKRRLTVDQVQFLEKSFEV---ENKLEPERKIQLAKDLGLQPRQVAIWFQNRRARWKTKQL 109 (289)
Q Consensus 48 ~~~rkR~R~T~eQl~~LE~~F~~---~~~P~~~~r~~LA~~LgLs~rQVkvWFQNRRak~Krk~~ 109 (289)
..+++|++|+..|+..||..|.. ++||+..++..||.++||+++||++||||||+|+|+..+
T Consensus 6 ~~rr~R~~~~~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~~L~~~qV~~WFqNrR~r~kk~~~ 70 (73)
T 1x2n_A 6 SGKNKRGVLPKHATNVMRSWLFQHIGHPYPTEDEKKQIAAQTNLTLLQVNNWFINARRRILQSGP 70 (73)
T ss_dssp SSCCSSCCCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHTTT
T ss_pred CCCCCCCcCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHCcCHHHHHHHhHHHHhhcccccc
Confidence 45667778999999999999976 999999999999999999999999999999999998654
No 47
>1puf_B PRE-B-cell leukemia transcription factor-1; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Homo sapiens} SCOP: a.4.1.1 PDB: 1b8i_B* 2r5y_B* 2r5z_B*
Probab=99.68 E-value=4.1e-17 Score=122.10 Aligned_cols=62 Identities=29% Similarity=0.420 Sum_probs=57.7
Q ss_pred CCCCCcCCHHHHHHHHhhh---hccCCCCHHHHHHHHHHhCCChhhhhhHhhhhHHHHHHHHHHH
Q 022964 50 PEKKRRLTVDQVQFLEKSF---EVENKLEPERKIQLAKDLGLQPRQVAIWFQNRRARWKTKQLEK 111 (289)
Q Consensus 50 ~rkR~R~T~eQl~~LE~~F---~~~~~P~~~~r~~LA~~LgLs~rQVkvWFQNRRak~Krk~~e~ 111 (289)
+++|++|+..|+..|+..| ..++||+..++..||..+||+++||++||||||+|+|+.....
T Consensus 2 rr~R~~ft~~q~~~Le~~f~~~~~~~yP~~~~r~~La~~~~L~~~qV~~WFqNrR~r~kk~~~~~ 66 (73)
T 1puf_B 2 RRKRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKKNIGKF 66 (73)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHCTTTT
T ss_pred CCCCCcCCHHHHHHHHHHHHHhccCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHhhcccccccc
Confidence 5678889999999999999 8999999999999999999999999999999999999876543
No 48
>2ecb_A Zinc fingers and homeoboxes protein 1; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.68 E-value=3.8e-17 Score=128.04 Aligned_cols=57 Identities=25% Similarity=0.379 Sum_probs=53.8
Q ss_pred CCCcCCHHHHHHHHhhhhccCCCCHHHHHHHHHHhCCChhhhhhHhhhhHHHHHHHH
Q 022964 52 KKRRLTVDQVQFLEKSFEVENKLEPERKIQLAKDLGLQPRQVAIWFQNRRARWKTKQ 108 (289)
Q Consensus 52 kR~R~T~eQl~~LE~~F~~~~~P~~~~r~~LA~~LgLs~rQVkvWFQNRRak~Krk~ 108 (289)
+.++||.+|+..||..|..++||+..+|.+||..|||+++||+|||||||+|||++.
T Consensus 14 k~k~~t~~Ql~~Le~~F~~~~yp~~~~r~~LA~~lgLte~qVkvWFqNRR~k~rk~~ 70 (89)
T 2ecb_A 14 KFKEKTAEQLRVLQASFLNSSVLTDEELNRLRAQTKLTRREIDAWFTEKKKSKALKE 70 (89)
T ss_dssp CCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHSCC
T ss_pred hhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCcChHHCeecccccchHHHHHH
Confidence 445899999999999999999999999999999999999999999999999999854
No 49
>2ly9_A Zinc fingers and homeoboxes protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.67 E-value=5.1e-17 Score=121.73 Aligned_cols=59 Identities=20% Similarity=0.267 Sum_probs=56.1
Q ss_pred CCCCCcCCHHHHHHHHhhhhccCCCCHHHHHHHHHHhCCChhhhhhHhhhhHHHHHHHH
Q 022964 50 PEKKRRLTVDQVQFLEKSFEVENKLEPERKIQLAKDLGLQPRQVAIWFQNRRARWKTKQ 108 (289)
Q Consensus 50 ~rkR~R~T~eQl~~LE~~F~~~~~P~~~~r~~LA~~LgLs~rQVkvWFQNRRak~Krk~ 108 (289)
++.|++||.+|+..||..|..++||+..++..||..|||+++||++||||||+|+|+.+
T Consensus 7 ~~~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~ 65 (74)
T 2ly9_A 7 FGIRAKKTKEQLAELKVSYLKNQFPHDSEIIRLMKITGLTKGEIKKWFSDTRYNQRNSK 65 (74)
T ss_dssp CCTTCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTTTT
T ss_pred CCCCcCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCcCHHHeeeCChhHhHHHHhhC
Confidence 56678899999999999999999999999999999999999999999999999999864
No 50
>2cqx_A LAG1 longevity assurance homolog 5; homeodomain, DNA binding domain, transcription, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.67 E-value=2.7e-17 Score=123.66 Aligned_cols=59 Identities=27% Similarity=0.375 Sum_probs=54.9
Q ss_pred CCCCCcCCHHHHHHHHhhh-hccCCCCHHHHHHHHHHhCCChhhhhhHhhhhHHHHHHHH
Q 022964 50 PEKKRRLTVDQVQFLEKSF-EVENKLEPERKIQLAKDLGLQPRQVAIWFQNRRARWKTKQ 108 (289)
Q Consensus 50 ~rkR~R~T~eQl~~LE~~F-~~~~~P~~~~r~~LA~~LgLs~rQVkvWFQNRRak~Krk~ 108 (289)
.+++++++.+|+..||..| ..++||+..++..||.+|||+++||+|||||||+|+|+..
T Consensus 9 ~k~r~r~~~~ql~~LE~~F~~~~~yp~~~~r~~LA~~l~l~e~qVqvWFqNRR~k~r~~~ 68 (72)
T 2cqx_A 9 IKDSPVNKVEPNDTLEKVFVSVTKYPDEKRLKGLSKQLDWSVRKIQCWFRHRRNQDKPSG 68 (72)
T ss_dssp CCCCCCSCSCSTTHHHHHHHHTCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHSSCC
T ss_pred CCCCCCCCHHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCCChhhcchhhhhcccCCCCCC
Confidence 4567779999999999999 9999999999999999999999999999999999999743
No 51
>1k61_A Mating-type protein alpha-2; protein-DNA complex, homeodomain, hoogsteen base PAIR, transcription/DNA complex; HET: 5IU; 2.10A {Synthetic} SCOP: a.4.1.1
Probab=99.67 E-value=6.6e-17 Score=116.51 Aligned_cols=56 Identities=30% Similarity=0.417 Sum_probs=53.3
Q ss_pred CCCcCCHHHHHHHHhhhhc---cCCCCHHHHHHHHHHhCCChhhhhhHhhhhHHHHHHH
Q 022964 52 KKRRLTVDQVQFLEKSFEV---ENKLEPERKIQLAKDLGLQPRQVAIWFQNRRARWKTK 107 (289)
Q Consensus 52 kR~R~T~eQl~~LE~~F~~---~~~P~~~~r~~LA~~LgLs~rQVkvWFQNRRak~Krk 107 (289)
++++|+.+|+..||..|.. ++||+..++..||.++||+++||++||||||+|+|+.
T Consensus 1 rr~~ft~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~gl~~~qV~~WFqNrR~r~kk~ 59 (60)
T 1k61_A 1 RGHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVSNRRRKEKTI 59 (60)
T ss_dssp CCCSCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCC
T ss_pred CcCcCCHHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHcccccC
Confidence 4678999999999999999 9999999999999999999999999999999999873
No 52
>1b72_B Protein (PBX1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1 PDB: 1lfu_P
Probab=99.67 E-value=1.2e-16 Score=123.30 Aligned_cols=61 Identities=30% Similarity=0.445 Sum_probs=56.6
Q ss_pred CCCCCcCCHHHHHHHHhhh---hccCCCCHHHHHHHHHHhCCChhhhhhHhhhhHHHHHHHHHH
Q 022964 50 PEKKRRLTVDQVQFLEKSF---EVENKLEPERKIQLAKDLGLQPRQVAIWFQNRRARWKTKQLE 110 (289)
Q Consensus 50 ~rkR~R~T~eQl~~LE~~F---~~~~~P~~~~r~~LA~~LgLs~rQVkvWFQNRRak~Krk~~e 110 (289)
+|+|++|+..|+..||.+| ..++||+..++..||..|||+.+||++||||||+|+|+....
T Consensus 2 rr~R~~ft~~q~~~Le~~f~~h~~~~yp~~~~r~~La~~~~l~~~qV~~WFqNrR~r~kk~~~~ 65 (87)
T 1b72_B 2 RRKRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKKNIGK 65 (87)
T ss_dssp -CCCCCCCHHHHHHHHHHHHTTTTSCCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHCGGG
T ss_pred CCCCCCCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHhhhcccc
Confidence 5678889999999999999 899999999999999999999999999999999999987644
No 53
>1du6_A PBX1, homeobox protein PBX1; homeodomain, gene regulation; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.66 E-value=5.1e-17 Score=118.53 Aligned_cols=58 Identities=29% Similarity=0.441 Sum_probs=55.0
Q ss_pred CCCCCCcCCHHHHHHHHhhh---hccCCCCHHHHHHHHHHhCCChhhhhhHhhhhHHHHHH
Q 022964 49 QPEKKRRLTVDQVQFLEKSF---EVENKLEPERKIQLAKDLGLQPRQVAIWFQNRRARWKT 106 (289)
Q Consensus 49 ~~rkR~R~T~eQl~~LE~~F---~~~~~P~~~~r~~LA~~LgLs~rQVkvWFQNRRak~Kr 106 (289)
.+++|++|+..|+..||..| ..++||+..++..||..|||+..||++||||||+|+|+
T Consensus 3 ~rr~R~~ft~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~~L~~~qV~~WFqNrR~r~kk 63 (64)
T 1du6_A 3 GHIEGRHMNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKK 63 (64)
T ss_dssp CCCCCCSSTTTHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTSCHHHHHHHHHHHTTTSSC
T ss_pred CCCCCCcCCHHHHHHHHHHHHHcccCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHhcc
Confidence 46677889999999999999 89999999999999999999999999999999999986
No 54
>1le8_B Mating-type protein alpha-2; matalpha2, isothermal titration calorimetry, protein-DNA complex, transcription/DNA complex; 2.30A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1akh_B* 1apl_C* 1yrn_B*
Probab=99.66 E-value=6.6e-17 Score=124.22 Aligned_cols=64 Identities=28% Similarity=0.416 Sum_probs=56.5
Q ss_pred CCCCCCcCCHHHHHHHHhhhhc---cCCCCHHHHHHHHHHhCCChhhhhhHhhhhHHHHHHHHHHHH
Q 022964 49 QPEKKRRLTVDQVQFLEKSFEV---ENKLEPERKIQLAKDLGLQPRQVAIWFQNRRARWKTKQLEKD 112 (289)
Q Consensus 49 ~~rkR~R~T~eQl~~LE~~F~~---~~~P~~~~r~~LA~~LgLs~rQVkvWFQNRRak~Krk~~e~e 112 (289)
+++++++|+..|+..||..|.. ++||+..++..||..+||+.+||++||||||+|+|+.....+
T Consensus 2 K~krr~rft~~q~~~Le~~f~~h~~~~yP~~~~r~~La~~~gLt~~qV~~WFqNrR~r~kk~~~~~~ 68 (83)
T 1le8_B 2 KPYRGHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVAARRAKEKTITIAPE 68 (83)
T ss_dssp ---CCCCCCHHHHHHHHHHHHHTSSSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTSCCCHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHhhCCCCCcCHHHHHHHHHHHCCCHHHcccccHHHHccccccccCHH
Confidence 3456777999999999999999 999999999999999999999999999999999998765433
No 55
>2cuf_A FLJ21616 protein; homeobox domain, hepatocyte transcription factor, structural genomics, loop insertion, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.66 E-value=1.6e-16 Score=124.94 Aligned_cols=63 Identities=16% Similarity=0.250 Sum_probs=58.4
Q ss_pred CCCCCCCCcCCHHHHHHHHhhhhccCCCCHHHHHHHHHHhC---------------CChhhhhhHhhhhHHHHHHHHH
Q 022964 47 FHQPEKKRRLTVDQVQFLEKSFEVENKLEPERKIQLAKDLG---------------LQPRQVAIWFQNRRARWKTKQL 109 (289)
Q Consensus 47 ~~~~rkR~R~T~eQl~~LE~~F~~~~~P~~~~r~~LA~~Lg---------------Ls~rQVkvWFQNRRak~Krk~~ 109 (289)
.++++.|++||..|+..||..|..++||+..+|..||..|| |++.||++||||||+|+|++..
T Consensus 5 ~~~rr~R~~ft~~ql~~Le~~F~~~~yP~~~~r~~lA~~l~~~~~~~~~~~~~~~~ls~~qV~~WFqNRR~k~kr~~~ 82 (95)
T 2cuf_A 5 SSGRGSRFTWRKECLAVMESYFNENQYPDEAKREEIANACNAVIQKPGKKLSDLERVTSLKVYNWFANRRKEIKRRAN 82 (95)
T ss_dssp SCCCCCSCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHHCCTTCCCCTTTCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCchhhcccccccccCcCCHHHHHHHHHHHHHHHHHHhh
Confidence 35567777899999999999999999999999999999999 9999999999999999998754
No 56
>2dmn_A Homeobox protein TGIF2LX; TGFB-induced factor 2-like protein, X-linked TGF(beta) induced transcription factor 2-like protein, TGIF-like on the X; NMR {Homo sapiens}
Probab=99.65 E-value=1.8e-16 Score=121.96 Aligned_cols=64 Identities=23% Similarity=0.296 Sum_probs=57.5
Q ss_pred CCCCCCCCcCCHHHHHHHHhhhhc---cCCCCHHHHHHHHHHhCCChhhhhhHhhhhHHHHHHHHHH
Q 022964 47 FHQPEKKRRLTVDQVQFLEKSFEV---ENKLEPERKIQLAKDLGLQPRQVAIWFQNRRARWKTKQLE 110 (289)
Q Consensus 47 ~~~~rkR~R~T~eQl~~LE~~F~~---~~~P~~~~r~~LA~~LgLs~rQVkvWFQNRRak~Krk~~e 110 (289)
..++++|++|+.+|+..|+.+|.. ++||+..+|..||.++||+.+||++||||||+|+|+..++
T Consensus 5 ~~~rk~R~~~s~~q~~~L~~~f~~~~~~pYPs~~~r~~LA~~~gLs~~qV~~WFqNrR~r~k~~~~~ 71 (83)
T 2dmn_A 5 SSGKKRKGNLPAESVKILRDWMYKHRFKAYPSEEEKQMLSEKTNLSLLQISNWFINARRRILPDMLQ 71 (83)
T ss_dssp CCCCCCCSSCCHHHHHHHHHHHHHTTTTCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHTHHHHTC
T ss_pred CCCCCCCCcCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHhhHHhhhhHhhhcHHHHH
Confidence 355667778999999999999987 5999999999999999999999999999999999986543
No 57
>2dmp_A Zinc fingers and homeoboxes protein 2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.65 E-value=2.4e-16 Score=122.86 Aligned_cols=58 Identities=26% Similarity=0.339 Sum_probs=54.1
Q ss_pred CCCCcCCHHHHHHHHhhhhccCCCCHHHHHHHHHHhCCChhhhhhHhhhhHHHHHHHH
Q 022964 51 EKKRRLTVDQVQFLEKSFEVENKLEPERKIQLAKDLGLQPRQVAIWFQNRRARWKTKQ 108 (289)
Q Consensus 51 rkR~R~T~eQl~~LE~~F~~~~~P~~~~r~~LA~~LgLs~rQVkvWFQNRRak~Krk~ 108 (289)
++++++|.+|+..||..|..++||+..++..||..|||+++||+|||||||+|+|++.
T Consensus 15 ~k~k~~t~~Ql~~Le~~F~~~~yp~~~~r~~La~~~~l~~~qV~vWFqNRR~k~r~~~ 72 (89)
T 2dmp_A 15 QKFKEKTQGQVKILEDSFLKSSFPTQAELDRLRVETKLSRREIDSWFSERRKLRDSME 72 (89)
T ss_dssp SCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHTSC
T ss_pred cccccCCHHHHHHHHHHHccCCCCCHHHHHHHHHHhCCCHHhccHhhHhHHHHHHHHh
Confidence 4455699999999999999999999999999999999999999999999999998754
No 58
>1mnm_C Protein (MAT alpha-2 transcriptional repressor); transcription regulation, transcriptional repression, DNA- binding protein; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.1
Probab=99.65 E-value=1.9e-16 Score=122.43 Aligned_cols=60 Identities=30% Similarity=0.419 Sum_probs=55.8
Q ss_pred CCCCCCCCcCCHHHHHHHHhhhhc---cCCCCHHHHHHHHHHhCCChhhhhhHhhhhHHHHHH
Q 022964 47 FHQPEKKRRLTVDQVQFLEKSFEV---ENKLEPERKIQLAKDLGLQPRQVAIWFQNRRARWKT 106 (289)
Q Consensus 47 ~~~~rkR~R~T~eQl~~LE~~F~~---~~~P~~~~r~~LA~~LgLs~rQVkvWFQNRRak~Kr 106 (289)
..++++|++|+.+|+..||..|.. ++||+..++..||..+||+++||++||||||+|+|.
T Consensus 25 ~~~~k~r~~ft~~q~~~Le~~f~~~~~~~yP~~~~r~~La~~~gL~~~qV~~WFqNrR~r~k~ 87 (87)
T 1mnm_C 25 STKPYRGHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVSNRRRKEKT 87 (87)
T ss_dssp ESSCCTTCCCCHHHHHHHHHHHHHTTSSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTC
T ss_pred CCCCCCCCcCCHHHHHHHHHHHHHhCCCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHhhccC
Confidence 455667788999999999999999 999999999999999999999999999999999973
No 59
>1au7_A Protein PIT-1, GHF-1; complex (DNA-binding protein/DNA), pituitary, CPHD, POU domain, transcription factor, transcription/DNA complex; HET: DNA; 2.30A {Rattus norvegicus} SCOP: a.4.1.1 a.35.1.1
Probab=99.63 E-value=2e-16 Score=133.73 Aligned_cols=61 Identities=25% Similarity=0.468 Sum_probs=54.8
Q ss_pred CCCCCCCCcCCHHHHHHHHhhhhccCCCCHHHHHHHHHHhCCChhhhhhHhhhhHHHHHHH
Q 022964 47 FHQPEKKRRLTVDQVQFLEKSFEVENKLEPERKIQLAKDLGLQPRQVAIWFQNRRARWKTK 107 (289)
Q Consensus 47 ~~~~rkR~R~T~eQl~~LE~~F~~~~~P~~~~r~~LA~~LgLs~rQVkvWFQNRRak~Krk 107 (289)
..++|+|++||..|+..||..|..++||+..+|..||..|||+++||+|||||||+|+|++
T Consensus 85 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~ 145 (146)
T 1au7_A 85 ERKRKRRTTISIAAKDALERHFGEHSKPSSQEIMRMAEELNLEKEVVRVWFCNRRQREKRV 145 (146)
T ss_dssp ----CCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHTTSC
T ss_pred CCCCCCCcCccHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCCChhhchhhhHhhhhhhhcc
Confidence 3556667789999999999999999999999999999999999999999999999999985
No 60
>2l9r_A Homeobox protein NKX-3.1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.62 E-value=1.1e-16 Score=119.79 Aligned_cols=56 Identities=43% Similarity=0.605 Sum_probs=53.0
Q ss_pred cCCHHHHHHHHhhhhccCCCCHHHHHHHHHHhCCChhhhhhHhhhhHHHHHHHHHH
Q 022964 55 RLTVDQVQFLEKSFEVENKLEPERKIQLAKDLGLQPRQVAIWFQNRRARWKTKQLE 110 (289)
Q Consensus 55 R~T~eQl~~LE~~F~~~~~P~~~~r~~LA~~LgLs~rQVkvWFQNRRak~Krk~~e 110 (289)
.+|..|+..||..|..++||+..+|..||..|||+++||++||||||+|+|+++..
T Consensus 10 ~~t~~ql~~LE~~F~~~~yp~~~~r~~LA~~l~Lte~qVqvWFqNRRak~kr~~~~ 65 (69)
T 2l9r_A 10 HMSHTQVIELERKFSHQKYLSAPERAHLAKNLKLTETQVKIWFQNRRYKTKRKQLS 65 (69)
T ss_dssp CCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHSCCSSSS
T ss_pred cCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCChhheeecchhhhhhhhhhhhh
Confidence 48999999999999999999999999999999999999999999999999987643
No 61
>1e3o_C Octamer-binding transcription factor 1; transcription factor, POU domain, dimer, DNA binding; 1.9A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1 PDB: 1gt0_C 1hf0_A* 1cqt_A* 1o4x_A 1oct_C* 1pou_A 1pog_A 1hdp_A
Probab=99.62 E-value=3.1e-16 Score=134.24 Aligned_cols=61 Identities=26% Similarity=0.406 Sum_probs=54.2
Q ss_pred CCCCCCCCcCCHHHHHHHHhhhhccCCCCHHHHHHHHHHhCCChhhhhhHhhhhHHHHHHH
Q 022964 47 FHQPEKKRRLTVDQVQFLEKSFEVENKLEPERKIQLAKDLGLQPRQVAIWFQNRRARWKTK 107 (289)
Q Consensus 47 ~~~~rkR~R~T~eQl~~LE~~F~~~~~P~~~~r~~LA~~LgLs~rQVkvWFQNRRak~Krk 107 (289)
..++|+|++||..|+..||..|..++||+..+|..||..|||+++||+|||||||+|+|++
T Consensus 99 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~ 159 (160)
T 1e3o_C 99 SRRRKKRTSIETNIRVALEKSFMENQKPTSEDITLIAEQLNMEKEVIRVWFSNRRQKEKRI 159 (160)
T ss_dssp -----CCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTSC
T ss_pred CCCCcCccccCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHCCChHHhhHhhHHhhhhhhcc
Confidence 3566777789999999999999999999999999999999999999999999999999974
No 62
>3nau_A Zinc fingers and homeoboxes protein 2; ZHX2, corepressor, homeodomain, domain swapping, structural oxford protein production facility, OPPF; 2.70A {Homo sapiens}
Probab=99.61 E-value=5.7e-16 Score=115.04 Aligned_cols=53 Identities=23% Similarity=0.340 Sum_probs=50.6
Q ss_pred CCHHHHHHHHhhhhccCCCCHHHHHHHHHHhCCChhhhhhHhhhhHHHHHHHH
Q 022964 56 LTVDQVQFLEKSFEVENKLEPERKIQLAKDLGLQPRQVAIWFQNRRARWKTKQ 108 (289)
Q Consensus 56 ~T~eQl~~LE~~F~~~~~P~~~~r~~LA~~LgLs~rQVkvWFQNRRak~Krk~ 108 (289)
-|.+|+..||..|..++||+..++.+||..|||+.+||++||||||+|+|+.+
T Consensus 11 ~~~~Ql~~LE~~F~~~~YPs~~er~eLA~~tgLt~~qVkvWFqNRR~k~Kkg~ 63 (66)
T 3nau_A 11 KTKEQIAHLKASFLQSQFPDDAEVYRLIEVTGLARSEIKKWFSDHRYRCQRGI 63 (66)
T ss_dssp CCHHHHHHHHHHHHGGGSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCcCHHHhhHhcccchhhhhccC
Confidence 47899999999999999999999999999999999999999999999999754
No 63
>2xsd_C POU domain, class 3, transcription factor 1; transcription-DNA complex, SOX; 2.05A {Mus musculus}
Probab=99.61 E-value=3.1e-16 Score=135.04 Aligned_cols=63 Identities=27% Similarity=0.302 Sum_probs=52.3
Q ss_pred CCCCCCCCcCCHHHHHHHHhhhhccCCCCHHHHHHHHHHhCCChhhhhhHhhhhHHHHHHHHH
Q 022964 47 FHQPEKKRRLTVDQVQFLEKSFEVENKLEPERKIQLAKDLGLQPRQVAIWFQNRRARWKTKQL 109 (289)
Q Consensus 47 ~~~~rkR~R~T~eQl~~LE~~F~~~~~P~~~~r~~LA~~LgLs~rQVkvWFQNRRak~Krk~~ 109 (289)
.+++|+|++||..|+..||..|..++||+..+|..||..|||+++||+|||||||+|+|+...
T Consensus 97 ~~~rr~Rt~ft~~Ql~~LE~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~~~ 159 (164)
T 2xsd_C 97 GRKRKKRTSIEVGVKGALESHFLKCPKPSAHEITGLADSLQLEKEVVRVWFCNRRQKEKRMTP 159 (164)
T ss_dssp ---------CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTBSCC
T ss_pred ccCCCCceeccHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCCChhhhhhhhHHhhHHHhhccC
Confidence 455667778999999999999999999999999999999999999999999999999998653
No 64
>1x2m_A LAG1 longevity assurance homolog 6; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.61 E-value=3e-16 Score=115.92 Aligned_cols=50 Identities=28% Similarity=0.473 Sum_probs=46.8
Q ss_pred HHHHHHHHhhh-hccCCCCHHHHHHHHHHhCCChhhhhhHhhhhHHHHHHH
Q 022964 58 VDQVQFLEKSF-EVENKLEPERKIQLAKDLGLQPRQVAIWFQNRRARWKTK 107 (289)
Q Consensus 58 ~eQl~~LE~~F-~~~~~P~~~~r~~LA~~LgLs~rQVkvWFQNRRak~Krk 107 (289)
+.|+..||..| ..++||+..+|.+||.+|||+++||+|||||||+|+|+.
T Consensus 9 ~~~~~~LE~~F~~~~~yp~~~~r~~LA~~l~LterQVkvWFqNRR~k~k~~ 59 (64)
T 1x2m_A 9 AQPNAILEKVFTAITKHPDEKRLEGLSKQLDWDVRSIQRWFRQRRNQEKPS 59 (64)
T ss_dssp SCHHHHHHHHHHTTCSSCCHHHHHHHHHHHCSCHHHHHHHHHHHHHHSCCS
T ss_pred chHHHHHHHHHHHcCCCcCHHHHHHHHHHhCCCHHHHHHHHHHHHhccCCC
Confidence 56899999999 568999999999999999999999999999999999864
No 65
>3d1n_I POU domain, class 6, transcription factor 1; protein-DNA complex, helix-turn-helix (HTH), DNA-binding, homeobox, nucleus, transcription regulation; 2.51A {Homo sapiens}
Probab=99.60 E-value=8.1e-16 Score=130.31 Aligned_cols=60 Identities=23% Similarity=0.415 Sum_probs=56.1
Q ss_pred CCCCCCCCcCCHHHHHHHHhhhhccCCCCHHHHHHHHHHhCCChhhhhhHhhhhHHHHHH
Q 022964 47 FHQPEKKRRLTVDQVQFLEKSFEVENKLEPERKIQLAKDLGLQPRQVAIWFQNRRARWKT 106 (289)
Q Consensus 47 ~~~~rkR~R~T~eQl~~LE~~F~~~~~P~~~~r~~LA~~LgLs~rQVkvWFQNRRak~Kr 106 (289)
.+++|+|++||..|+..||..|..++||+..++..||.+|||+++||++||||||+|+|+
T Consensus 91 ~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNrR~k~Kk 150 (151)
T 3d1n_I 91 SKKRKRRTSFTPQAIEALNAYFEKNPLPTGQEITEMAKELNYDREVVRVWFSNRRQTLKN 150 (151)
T ss_dssp CCCCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHTC
T ss_pred CCCCCCCcccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCCCHHHhHHHHHHHHhccCC
Confidence 345666778999999999999999999999999999999999999999999999999986
No 66
>2e19_A Transcription factor 8; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.59 E-value=1.1e-15 Score=112.41 Aligned_cols=53 Identities=15% Similarity=0.267 Sum_probs=49.8
Q ss_pred CcCCHHHHHHHHhhhhccCCCCHHHHHHHHHHhCCChhhhhhHhhhhHHHHHH
Q 022964 54 RRLTVDQVQFLEKSFEVENKLEPERKIQLAKDLGLQPRQVAIWFQNRRARWKT 106 (289)
Q Consensus 54 ~R~T~eQl~~LE~~F~~~~~P~~~~r~~LA~~LgLs~rQVkvWFQNRRak~Kr 106 (289)
...+..|+..||..|..++||+..+|..||.+|||+++||+|||||||+|.++
T Consensus 8 ~~p~~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~L~e~qVqvWFqNRRak~~~ 60 (64)
T 2e19_A 8 QPPLKNLLSLLKAYYALNAQPSAEELSKIADSVNLPLDVVKKWFEKMQAGQIS 60 (64)
T ss_dssp CCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHTCSC
T ss_pred CCccHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCcChhhcCcchhcccCCCCC
Confidence 34568999999999999999999999999999999999999999999999876
No 67
>2da6_A Hepatocyte nuclear factor 1-beta; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.59 E-value=2.5e-15 Score=120.47 Aligned_cols=63 Identities=17% Similarity=0.219 Sum_probs=57.8
Q ss_pred CCCCCCCCcCCHHHHHHHHhhhhccCCCCHHHHHHHHHHh---------------------CCChhhhhhHhhhhHHHHH
Q 022964 47 FHQPEKKRRLTVDQVQFLEKSFEVENKLEPERKIQLAKDL---------------------GLQPRQVAIWFQNRRARWK 105 (289)
Q Consensus 47 ~~~~rkR~R~T~eQl~~LE~~F~~~~~P~~~~r~~LA~~L---------------------gLs~rQVkvWFQNRRak~K 105 (289)
..++|.|++|+..|+.+||..|..++||+..+|.+||..| +|++.+|++||||||+++|
T Consensus 4 ~~~Rr~Rt~ft~~ql~~Le~~F~~~~yPs~~~Re~LA~~ln~~~c~q~g~~~~~~~GL~~~~lte~~V~~WFqNRR~k~k 83 (102)
T 2da6_A 4 GSSGRNRFKWGPASQQILYQAYDRQKNPSKEEREALVEECNRAECLQRGVSPSKAHGLGSNLVTEVRVYNWFANRRKEEA 83 (102)
T ss_dssp CCSCCCCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHHHHTSCCTTCGGGGGGGCCCHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCccCCHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHhhhcccccccchhcccccccccccceeeeecchHHHHH
Confidence 3566777789999999999999999999999999999999 7999999999999999999
Q ss_pred HHHH
Q 022964 106 TKQL 109 (289)
Q Consensus 106 rk~~ 109 (289)
+++.
T Consensus 84 r~~~ 87 (102)
T 2da6_A 84 FRQK 87 (102)
T ss_dssp HHHH
T ss_pred HhhH
Confidence 8653
No 68
>3l1p_A POU domain, class 5, transcription factor 1; POU, transcription factor DNA complex, pore, stem cells; HET: DNA; 2.80A {Mus musculus} PDB: 1ocp_A
Probab=99.58 E-value=1.7e-15 Score=129.16 Aligned_cols=60 Identities=27% Similarity=0.383 Sum_probs=55.9
Q ss_pred CCCCCCCcCCHHHHHHHHhhhhccCCCCHHHHHHHHHHhCCChhhhhhHhhhhHHHHHHH
Q 022964 48 HQPEKKRRLTVDQVQFLEKSFEVENKLEPERKIQLAKDLGLQPRQVAIWFQNRRARWKTK 107 (289)
Q Consensus 48 ~~~rkR~R~T~eQl~~LE~~F~~~~~P~~~~r~~LA~~LgLs~rQVkvWFQNRRak~Krk 107 (289)
.++|+|++|+..|+..||..|..++||+..++..||..|||+++||+|||||||+|+|+.
T Consensus 95 ~~rr~Rt~ft~~Q~~~Le~~F~~~~yps~~~r~~LA~~l~L~~~qV~vWFqNRR~k~Kr~ 154 (155)
T 3l1p_A 95 ARKRKRTSIENRVRWSLETMFLKSPKPSLQQITHIANQLGLEKDVVRVWFSNRRQKGKRS 154 (155)
T ss_dssp CSCCCCCCCCHHHHHHHHTTTTTCSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHC-
T ss_pred CCCCCCcccCHHHHHHHHHHHccCCCCCHHHHHHHHHHcCCChhheeeccccccccccCC
Confidence 456677789999999999999999999999999999999999999999999999999973
No 69
>1wi3_A DNA-binding protein SATB2; homeodomain, helix-turn-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.58 E-value=2.5e-15 Score=112.23 Aligned_cols=58 Identities=19% Similarity=0.306 Sum_probs=53.7
Q ss_pred CCCCCCCcCCHHHHHHHHhhhhc-cCCCCHHHHHHHHHHhCCChhhhhhHhhhhHHHHH
Q 022964 48 HQPEKKRRLTVDQVQFLEKSFEV-ENKLEPERKIQLAKDLGLQPRQVAIWFQNRRARWK 105 (289)
Q Consensus 48 ~~~rkR~R~T~eQl~~LE~~F~~-~~~P~~~~r~~LA~~LgLs~rQVkvWFQNRRak~K 105 (289)
.++|.|+.|+.+|+.+|+..|+. ++||+.+.|..||.+|||++++|+|||||||--.+
T Consensus 6 ~~kR~RT~~s~eQL~~Lqs~f~~~~~yPd~~~r~~La~~tGL~~~~IqVWFQNrR~~~~ 64 (71)
T 1wi3_A 6 SGPRSRTKISLEALGILQSFIHDVGLYPDQEAIHTLSAQLDLPKHTIIKFFQNQRYHVK 64 (71)
T ss_dssp CCCCCCCCCCSHHHHHHHHHHHHHCSCCCHHHHHHHHHHSCCCHHHHHHHHHHHHHHCC
T ss_pred CCCCCCccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCHHHHHHhhccceeeec
Confidence 45677888999999999999999 99999999999999999999999999999997544
No 70
>1lfb_A Liver transcription factor (LFB1); transcription regulation; 2.80A {Rattus norvegicus} SCOP: a.4.1.1 PDB: 2lfb_A
Probab=99.57 E-value=1.3e-15 Score=121.42 Aligned_cols=64 Identities=20% Similarity=0.290 Sum_probs=53.8
Q ss_pred CCCCCCCCcCCHHHHHHHHhhhhccCCCCHHHHHHHHHH------------------hC---CChhhhhhHhhhhHHHHH
Q 022964 47 FHQPEKKRRLTVDQVQFLEKSFEVENKLEPERKIQLAKD------------------LG---LQPRQVAIWFQNRRARWK 105 (289)
Q Consensus 47 ~~~~rkR~R~T~eQl~~LE~~F~~~~~P~~~~r~~LA~~------------------Lg---Ls~rQVkvWFQNRRak~K 105 (289)
.++++.|+.|+..|+..||..|..++||+..+|.+||.. || |++.+|++||||||+++|
T Consensus 7 ~k~rr~Rt~ft~~Ql~~LE~~F~~~~yP~~~~R~eLA~~~n~~~~~~~g~~~~~~~~lg~~~lse~qV~vWFqNRR~k~k 86 (99)
T 1lfb_A 7 KKGRRNRFKWGPASQQILFQAYERQKNPSKEERETLVEECNRAECIQRGVSPSQAQGLGSNLVTEVRVYNWFANRRKEEA 86 (99)
T ss_dssp ------CCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHHTTTTCCTTCTTTTGGGCCCHHHHHHHHHHHHHTTS
T ss_pred CCCCCCCcCcCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhccccccccccccccccccCccccCcceeeeccHHHHHHHH
Confidence 345566677999999999999999999999999999999 88 999999999999999998
Q ss_pred HHHHH
Q 022964 106 TKQLE 110 (289)
Q Consensus 106 rk~~e 110 (289)
+++..
T Consensus 87 ~k~~~ 91 (99)
T 1lfb_A 87 FRHKL 91 (99)
T ss_dssp CCC--
T ss_pred Hhchh
Confidence 87643
No 71
>3k2a_A Homeobox protein MEIS2; homeobox domain, DNA-binding, transcription, nucleus, phosphoprotein, DNA bindi protein; 1.95A {Homo sapiens} SCOP: a.4.1.1
Probab=99.56 E-value=2.6e-15 Score=111.15 Aligned_cols=59 Identities=25% Similarity=0.286 Sum_probs=51.0
Q ss_pred cCCHHHHHHHHhhhh---ccCCCCHHHHHHHHHHhCCChhhhhhHhhhhHHHHHHHHHHHHH
Q 022964 55 RLTVDQVQFLEKSFE---VENKLEPERKIQLAKDLGLQPRQVAIWFQNRRARWKTKQLEKDY 113 (289)
Q Consensus 55 R~T~eQl~~LE~~F~---~~~~P~~~~r~~LA~~LgLs~rQVkvWFQNRRak~Krk~~e~e~ 113 (289)
+|+.+|+..|+..|. .++||+..++..||..+||+.+||++||||||+|+|+..+++..
T Consensus 4 ~f~~~~~~~L~~~f~~h~~~pyp~~~~r~~La~~~~l~~~qV~~WFqNrR~r~kk~~~~~~~ 65 (67)
T 3k2a_A 4 IFPKVATNIMRAWLFQHLTHPYPSEEQKKQLAQDTGLTILQVNNWFINARRRIVQPMIDQSN 65 (67)
T ss_dssp --CHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHSCC-----
T ss_pred cCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHhCcCHHHhhhhhHHHHHHHhHHHHHHhc
Confidence 699999999999999 99999999999999999999999999999999999997766543
No 72
>2d5v_A Hepatocyte nuclear factor 6; transcription factor, transcription-DNA complex; 2.00A {Rattus norvegicus} PDB: 1s7e_A
Probab=99.55 E-value=2.8e-15 Score=128.28 Aligned_cols=62 Identities=24% Similarity=0.266 Sum_probs=54.3
Q ss_pred CCCCCCCCcCCHHHHHHHHhhhhccCCCCHHHHHHHHHHhCCChhhhhhHhhhhHHHHHHHH
Q 022964 47 FHQPEKKRRLTVDQVQFLEKSFEVENKLEPERKIQLAKDLGLQPRQVAIWFQNRRARWKTKQ 108 (289)
Q Consensus 47 ~~~~rkR~R~T~eQl~~LE~~F~~~~~P~~~~r~~LA~~LgLs~rQVkvWFQNRRak~Krk~ 108 (289)
...+|+|++||..|+..||..|..++||+..+|..||.+|||+++||++||||||+|+|+..
T Consensus 95 ~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~la~~l~L~~~qV~~WFqNrR~r~k~~~ 156 (164)
T 2d5v_A 95 NTPKKPRLVFTDVQRRTLHAIFKENKRPSKELQITISQQLGLELSTVSNFFMNARRRSLDKW 156 (164)
T ss_dssp -----CCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHTSSCC-
T ss_pred CCCCCCCCcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCcCHHHhhhcChhhhccccccC
Confidence 35567777899999999999999999999999999999999999999999999999999864
No 73
>2lk2_A Homeobox protein TGIF1; NESG, structural genomics, northeast structural genomics CON PSI-biology, transcription; NMR {Homo sapiens}
Probab=99.35 E-value=9.6e-13 Score=103.03 Aligned_cols=56 Identities=27% Similarity=0.309 Sum_probs=52.2
Q ss_pred cCCHHHHHHHHhhhhc---cCCCCHHHHHHHHHHhCCChhhhhhHhhhhHHHHHHHHHH
Q 022964 55 RLTVDQVQFLEKSFEV---ENKLEPERKIQLAKDLGLQPRQVAIWFQNRRARWKTKQLE 110 (289)
Q Consensus 55 R~T~eQl~~LE~~F~~---~~~P~~~~r~~LA~~LgLs~rQVkvWFQNRRak~Krk~~e 110 (289)
.|+.+++.+|+.+|.. ++||+..+|.+||.++||+.+||++||||||.|+++...+
T Consensus 11 ~l~~~~~~iL~~W~~~h~~npYPs~~ek~~LA~~tgLt~~QV~~WF~NrR~R~kk~~~~ 69 (89)
T 2lk2_A 11 MLPKESVQILRDWLYEHRYNAYPSEQEKALLSQQTHLSTLQVCNWFINARRRLLPDMLR 69 (89)
T ss_dssp CCCHHHHHHHHHHHHHTSGGGSCCHHHHHHHHHHSSSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHhhhHHHH
Confidence 4899999999999987 8999999999999999999999999999999999986544
No 74
>2da7_A Zinc finger homeobox protein 1B; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.35 E-value=7.6e-13 Score=99.18 Aligned_cols=47 Identities=17% Similarity=0.413 Sum_probs=44.5
Q ss_pred HHHHHHHHhhhhccCCCCHHHHHHHHHHhCCChhhhhhHhhhhHHHH
Q 022964 58 VDQVQFLEKSFEVENKLEPERKIQLAKDLGLQPRQVAIWFQNRRARW 104 (289)
Q Consensus 58 ~eQl~~LE~~F~~~~~P~~~~r~~LA~~LgLs~rQVkvWFQNRRak~ 104 (289)
.+|+..|+.+|..+++|+.+++..||..+||+.++|+|||||||++.
T Consensus 14 k~ql~~Lk~yF~~n~~Ps~eei~~LA~~lgL~~~VVrVWFqNrRa~~ 60 (71)
T 2da7_A 14 KDHMSVLKAYYAMNMEPNSDELLKISIAVGLPQEFVKEWFEQRKVYQ 60 (71)
T ss_dssp THHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCHHHHHHHHhhccccc
Confidence 47899999999999999999999999999999999999999999843
No 75
>1ic8_A Hepatocyte nuclear factor 1-alpha; transcription regulation, DNA-binding, POU domain, diabetes, disease mutation, MODY3, transcription/DNA comple; 2.60A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1
Probab=99.33 E-value=3.5e-13 Score=119.13 Aligned_cols=60 Identities=18% Similarity=0.250 Sum_probs=52.5
Q ss_pred CCCCCCCCcCCHHHHHHHHhhhhccCCCCHHHHHHHHHHhC---------------------CChhhhhhHhhhhHHHHH
Q 022964 47 FHQPEKKRRLTVDQVQFLEKSFEVENKLEPERKIQLAKDLG---------------------LQPRQVAIWFQNRRARWK 105 (289)
Q Consensus 47 ~~~~rkR~R~T~eQl~~LE~~F~~~~~P~~~~r~~LA~~Lg---------------------Ls~rQVkvWFQNRRak~K 105 (289)
.+++|.|+.|+..|+..||..|..++||+...|.+||..|| |++.+|++||||||+++|
T Consensus 113 ~k~rr~R~~ft~~ql~~Le~~F~~~~yp~~~~Re~la~~~~~~~~~~~G~~~~~~~glg~~~lte~~V~~WFqNRR~~~k 192 (194)
T 1ic8_A 113 KKGRRNRFKWGPASQQILFQAYERQKNPSKEERETLVEECNRAECIQRGVSPSQAQGLGSNLVTEVRVYNWFANRRKEEA 192 (194)
T ss_dssp ----CCCCCCCHHHHHHHHHHHHHHCCCCTTTTHHHHHHHHHHHHHHSSCCCTTCCTTGGGCCCHHHHHHHHHHHHHHCC
T ss_pred ccCCCCCcccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCchhhccccccccccccccccccCccccchhchhhhhhhh
Confidence 34456666799999999999999999999999999999999 999999999999999987
Q ss_pred H
Q 022964 106 T 106 (289)
Q Consensus 106 r 106 (289)
.
T Consensus 193 ~ 193 (194)
T 1ic8_A 193 F 193 (194)
T ss_dssp -
T ss_pred c
Confidence 5
No 76
>1mh3_A Maltose binding-A1 homeodomain protein chimera; MATA1, binding cooperativity, maltose binding protein, MBP, sugar binding, DNA binding protein; 2.10A {Escherichia coli} SCOP: a.4.1.1 c.94.1.1 PDB: 1mh4_A 1le8_A
Probab=99.23 E-value=3.4e-12 Score=120.04 Aligned_cols=54 Identities=33% Similarity=0.586 Sum_probs=51.1
Q ss_pred CCCcCCHHHHHHHHhhhhccCCCCHHHHHHHHHHhCCChhhhhhHhhhhHHHHH
Q 022964 52 KKRRLTVDQVQFLEKSFEVENKLEPERKIQLAKDLGLQPRQVAIWFQNRRARWK 105 (289)
Q Consensus 52 kR~R~T~eQl~~LE~~F~~~~~P~~~~r~~LA~~LgLs~rQVkvWFQNRRak~K 105 (289)
.++.++..|+..||+.|..++||+..+|.+||.+|||+++||++||||||+|+|
T Consensus 368 ~~~~~~~~q~~~Le~~f~~~~yp~~~~~~~la~~~~l~~~qv~~wf~n~r~~~~ 421 (421)
T 1mh3_A 368 AAAAISPQARAFLEQVFRRKQSLNSKEKEEVAKKCGITPLQVRVWFINKRMRSK 421 (421)
T ss_dssp HHCSSCHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTSCHHHHHHHHHHHHCCCC
T ss_pred hhhhhcchHHHHHHHHHhcCCCcCHHHHHHHHHHHCcCHHHhhHhhhhcccccC
Confidence 345699999999999999999999999999999999999999999999999986
No 77
>2h8r_A Hepatocyte nuclear factor 1-beta; trasncription factor, POU, homeo, protein-DNA, human disease; 3.20A {Homo sapiens}
Probab=99.15 E-value=2.4e-11 Score=109.19 Aligned_cols=56 Identities=18% Similarity=0.300 Sum_probs=50.6
Q ss_pred CCCCCCcCCHHHHHHHHhhhhccCCCCHHHHHHHHHHhC---------------------CChhhhhhHhhhhHHHH
Q 022964 49 QPEKKRRLTVDQVQFLEKSFEVENKLEPERKIQLAKDLG---------------------LQPRQVAIWFQNRRARW 104 (289)
Q Consensus 49 ~~rkR~R~T~eQl~~LE~~F~~~~~P~~~~r~~LA~~Lg---------------------Ls~rQVkvWFQNRRak~ 104 (289)
++|.|+.|+..|+..||..|..++||+..+|++||..+| |++.||++||||||++.
T Consensus 142 ~RR~R~~ft~~ql~~Le~~F~~~~YP~~~~ReeLA~~~n~~~~~~rg~~~~~~~~L~~~~lte~~V~~WFqNRR~~~ 218 (221)
T 2h8r_A 142 MRRNRFKWGPASQQILYQAYDRQKNPSKEEREALVEECNRAECLQRGVSPSKAHGLGSNLVTEVRVYNWFANRRKEE 218 (221)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHHHHHTTCCSTTGGGGTTSCCCHHHHHHHHHHHHTTC
T ss_pred CCCCCcCCCHHHHHHHHHHHHcCCCCCHHHHHHHHHHHChhhhcccccccchhccccccccCHHHHHHHhHHhhhhh
Confidence 344455699999999999999999999999999999988 89999999999999865
No 78
>2nzz_A Penetratin conjugated GAS (374-394) peptide; conformational analysis, G protein, GAS subunit, A2A adenosine receptor, cell-penetrating peptides; NMR {Synthetic} PDB: 2o00_A
Probab=98.79 E-value=2.2e-10 Score=75.76 Aligned_cols=27 Identities=48% Similarity=1.067 Sum_probs=22.3
Q ss_pred hhhhhHhhhhHHHHHHHHHHHHHHHHh
Q 022964 91 RQVAIWFQNRRARWKTKQLEKDYDVLQ 117 (289)
Q Consensus 91 rQVkvWFQNRRak~Krk~~e~e~~~l~ 117 (289)
+||+|||||||+|||++..++.++.++
T Consensus 1 rQVkIWFQNRRaK~Kk~~~~~~~~~~~ 27 (37)
T 2nzz_A 1 RQIKIWFQNRRMKWKKRVFNDARDIIQ 27 (37)
T ss_dssp CCTTTTTTCSHHHHTSSHHHHTTTSSS
T ss_pred CCceeccHHHHHHHHHHhHHHHHHHHH
Confidence 599999999999999998876655443
No 79
>2ys9_A Homeobox and leucine zipper protein homez; homeodomain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=93.50 E-value=0.062 Score=39.90 Aligned_cols=41 Identities=27% Similarity=0.420 Sum_probs=37.6
Q ss_pred HHHHHHHhhhhccCCCCHHHHHHHHHHhCCChhhhhhHhhh
Q 022964 59 DQVQFLEKSFEVENKLEPERKIQLAKDLGLQPRQVAIWFQN 99 (289)
Q Consensus 59 eQl~~LE~~F~~~~~P~~~~r~~LA~~LgLs~rQVkvWFQN 99 (289)
.-...|+.+|...+.+.......|+.+.+|+..||+-||-.
T Consensus 16 ~~~e~L~~Yy~~hk~L~EeDl~~L~~kskms~qqvkdwFa~ 56 (70)
T 2ys9_A 16 PDIQPLERYWAAHQQLRETDIPQLSQASRLSTQQVLDWFDS 56 (70)
T ss_dssp CCCHHHHHHHHHTCCCCTTHHHHHHHHTTCCHHHHHHHHHH
T ss_pred CcchHHHHHHHHhcccchhhHHHHHHHhCCCHHHHHHHHHh
Confidence 34578999999999999999999999999999999999954
No 80
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=90.94 E-value=0.71 Score=35.48 Aligned_cols=48 Identities=27% Similarity=0.282 Sum_probs=35.6
Q ss_pred hHHHHHHHHHHHHHHHHhhhhhhHHHhhHHHHHHHHHHHHHHHHHHHHHhh
Q 022964 100 RRARWKTKQLEKDYDVLQNSYNSLKADYDNLFKEKEKLKAEVLKLTDKLQV 150 (289)
Q Consensus 100 RRak~Krk~~e~e~~~l~~~~~~lk~~~~~l~~ene~L~~e~~~l~~~l~~ 150 (289)
||.|.|++..+. .+......|..+|..|..+.+.|+.|+..|+..|..
T Consensus 28 rrSR~krk~r~~---e~~~r~~~Le~EN~~Lr~~v~~L~~E~~~Lr~ll~~ 75 (87)
T 1hjb_A 28 RKSRDKAKMRNL---ETQHKVLELTAENERLQKKVEQLSRELSTLRNLFKQ 75 (87)
T ss_dssp HHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466666665443 355677788888888888888888888888877763
No 81
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=89.54 E-value=0.63 Score=35.06 Aligned_cols=46 Identities=28% Similarity=0.294 Sum_probs=31.9
Q ss_pred hHHHHHHHHHHHHHHHHhhhhhhHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 022964 100 RRARWKTKQLEKDYDVLQNSYNSLKADYDNLFKEKEKLKAEVLKLTDKL 148 (289)
Q Consensus 100 RRak~Krk~~e~e~~~l~~~~~~lk~~~~~l~~ene~L~~e~~~l~~~l 148 (289)
||.|.|++..+. .+......|..+|..|..+.+.|..|+..|+..|
T Consensus 28 krSR~krk~r~~---e~~~r~~~L~~eN~~L~~~v~~L~~E~~~Lr~ll 73 (78)
T 1gu4_A 28 RKSRDKAKMRNL---ETQHKVLELTAENERLQKKVEQLSRELSTLRNLF 73 (78)
T ss_dssp HHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466777665543 3455667777788888888888888887777544
No 82
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=88.37 E-value=2.1 Score=30.24 Aligned_cols=38 Identities=24% Similarity=0.179 Sum_probs=31.6
Q ss_pred HHHHHhhhhhhHHHhhHHHHHHHHHHHHHHHHHHHHHh
Q 022964 112 DYDVLQNSYNSLKADYDNLFKEKEKLKAEVLKLTDKLQ 149 (289)
Q Consensus 112 e~~~l~~~~~~lk~~~~~l~~ene~L~~e~~~l~~~l~ 149 (289)
....|......|...|..|..+...|+.|+..|+..|.
T Consensus 23 ~~~~Le~~~~~L~~~n~~L~~~i~~L~~e~~~Lk~~ll 60 (61)
T 1t2k_D 23 WVQSLEKKAEDLSSLNGQLQSEVTLLRNEVAQLKQLLL 60 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34567778888899999999999999999999988765
No 83
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=88.26 E-value=1.5 Score=32.34 Aligned_cols=38 Identities=21% Similarity=0.306 Sum_probs=26.4
Q ss_pred HHHHHhhhhhhHHHhhHHHHHHHHHHHHHHHHHHHHHh
Q 022964 112 DYDVLQNSYNSLKADYDNLFKEKEKLKAEVLKLTDKLQ 149 (289)
Q Consensus 112 e~~~l~~~~~~lk~~~~~l~~ene~L~~e~~~l~~~l~ 149 (289)
....|......|...+..|..||+.|+.++..|...+.
T Consensus 30 ~i~~LE~~v~~le~~~~~l~~en~~Lr~~i~~L~~El~ 67 (70)
T 1gd2_E 30 HLKALETQVVTLKELHSSTTLENDQLRQKVRQLEEELR 67 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445556666777777778888888888887776654
No 84
>2jn6_A Protein CGL2762, transposase; GFT PSI-2, protein structure, structural genomics, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: a.4.1.19
Probab=87.53 E-value=0.78 Score=34.33 Aligned_cols=43 Identities=16% Similarity=0.248 Sum_probs=30.0
Q ss_pred CCcCCHHHHHHHHhhhhcc-CCCCHHHHHHHHHHhCCChhhhhhHhhh
Q 022964 53 KRRLTVDQVQFLEKSFEVE-NKLEPERKIQLAKDLGLQPRQVAIWFQN 99 (289)
Q Consensus 53 R~R~T~eQl~~LE~~F~~~-~~P~~~~r~~LA~~LgLs~rQVkvWFQN 99 (289)
|++||.++....-..+... .. ....+|+.+|++...|..|...
T Consensus 3 r~~ys~e~k~~~v~~~~~~~g~----s~~~ia~~~gIs~~tl~rW~~~ 46 (97)
T 2jn6_A 3 TKTYSEEFKRDAVALYENSDGA----SLQQIANDLGINRVTLKNWIIK 46 (97)
T ss_dssp CCCCCHHHHHHHHHHHTTGGGS----CHHHHHHHHTSCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHcCCC----hHHHHHHHHCcCHHHHHHHHHH
Confidence 3568888766554444322 22 3678999999999999999753
No 85
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=87.06 E-value=4.2 Score=31.37 Aligned_cols=63 Identities=21% Similarity=0.133 Sum_probs=43.9
Q ss_pred CCChhhhhhHhhhhHHHH-------HHHHHHHHHHHHhhhhhhHHHhhHHHHHHHHHHHHHHHHHHHHHh
Q 022964 87 GLQPRQVAIWFQNRRARW-------KTKQLEKDYDVLQNSYNSLKADYDNLFKEKEKLKAEVLKLTDKLQ 149 (289)
Q Consensus 87 gLs~rQVkvWFQNRRak~-------Krk~~e~e~~~l~~~~~~lk~~~~~l~~ene~L~~e~~~l~~~l~ 149 (289)
||+..+|..|=|-||.-. -+.+.......|......|..+.+.|..|+..+..|...++.++.
T Consensus 17 gls~eev~~lKq~RRtlKNRgyAq~CR~Kr~~q~~~LE~e~~~L~~e~~~L~~e~~~~~~e~d~~k~k~~ 86 (90)
T 2wt7_B 17 GFTKDEVIRLKQKRRTLKNRGYAQSCRYKRVQQKHHLENEKTQLIQQVEQLKQEVSRLARERDAYKVKSE 86 (90)
T ss_dssp TCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777777777766665321 122233455667777788888888888888888888888887764
No 86
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=86.06 E-value=1 Score=32.04 Aligned_cols=37 Identities=24% Similarity=0.337 Sum_probs=24.4
Q ss_pred HHHHhhhhhhHHHhhHHHHHHHHHHHHHHHHHHHHHh
Q 022964 113 YDVLQNSYNSLKADYDNLFKEKEKLKAEVLKLTDKLQ 149 (289)
Q Consensus 113 ~~~l~~~~~~lk~~~~~l~~ene~L~~e~~~l~~~l~ 149 (289)
...|......|..++..|..+...|+.|+..|+..|.
T Consensus 24 ~~~Le~~v~~L~~~n~~L~~~v~~L~~e~~~Lk~~l~ 60 (62)
T 1jnm_A 24 IARLEEKVKTLKAQNSELASTANMLREQVAQLKQKVM 60 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456667777777777777888888888777776554
No 87
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=86.00 E-value=2.9 Score=29.84 Aligned_cols=46 Identities=22% Similarity=0.345 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhHHHhhHHHHHHHHHHHHHHHHHHHHHh
Q 022964 101 RARWKTKQLEKDYDVLQNSYNSLKADYDNLFKEKEKLKAEVLKLTDKLQ 149 (289)
Q Consensus 101 Rak~Krk~~e~e~~~l~~~~~~lk~~~~~l~~ene~L~~e~~~l~~~l~ 149 (289)
|.|.|++ .....|......|...|..|..+...|+.|+..|+.-|.
T Consensus 16 R~R~KKk---~~~~~le~~~~~L~~~N~~L~~~i~~L~~E~~~Lk~ll~ 61 (63)
T 1ci6_A 16 RYRQKKR---AEQEALTGECKELEKKNEALKERADSLAKEIQYLKDLIE 61 (63)
T ss_dssp HHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4444443 344567777888888888888888888888888876653
No 88
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=83.25 E-value=5.2 Score=28.38 Aligned_cols=38 Identities=29% Similarity=0.180 Sum_probs=30.4
Q ss_pred HHHHHhhhhhhHHHhhHHHHHHHHHHHHHHHHHHHHHh
Q 022964 112 DYDVLQNSYNSLKADYDNLFKEKEKLKAEVLKLTDKLQ 149 (289)
Q Consensus 112 e~~~l~~~~~~lk~~~~~l~~ene~L~~e~~~l~~~l~ 149 (289)
....|......|..+|..|..+...|+.|+..|+..|.
T Consensus 24 ~~~~Le~~v~~L~~~n~~L~~ei~~L~~e~~~Lk~~l~ 61 (63)
T 2wt7_A 24 LTDTLQAETDQLEDEKSALQTEIANLLKEKEKLEFILA 61 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567777888888888888888888888888887764
No 89
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=79.17 E-value=3.1 Score=28.91 Aligned_cols=30 Identities=23% Similarity=0.272 Sum_probs=16.0
Q ss_pred hhhHHHhhHHHHHHHHHHHHHHHHHHHHHh
Q 022964 120 YNSLKADYDNLFKEKEKLKAEVLKLTDKLQ 149 (289)
Q Consensus 120 ~~~lk~~~~~l~~ene~L~~e~~~l~~~l~ 149 (289)
++.|+.++..|+.+++.|..++..|+.+|.
T Consensus 21 ~eaLk~E~~eLk~k~~~L~~~~~el~~~l~ 50 (53)
T 2yy0_A 21 IELLRLELAEMKEKYEAIVEENKKLKAKLA 50 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344555555555555555555555555543
No 90
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=78.16 E-value=3.9 Score=29.26 Aligned_cols=28 Identities=21% Similarity=0.368 Sum_probs=17.6
Q ss_pred hHHHhhHHHHHHHHHHHHHHHHHHHHHh
Q 022964 122 SLKADYDNLFKEKEKLKAEVLKLTDKLQ 149 (289)
Q Consensus 122 ~lk~~~~~l~~ene~L~~e~~~l~~~l~ 149 (289)
.|......|..+|..|+.++..|++.|.
T Consensus 34 ~Le~~v~~L~~eN~~L~~ev~~Lr~~l~ 61 (63)
T 2dgc_A 34 QLEDKVEELLSKNYHLENEVARLKKLVG 61 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4445556667777777777777776553
No 91
>2glo_A Brinker CG9653-PA; protein-DNA complex, helix-turn-helix motif, transcription/DNA complex; NMR {Drosophila melanogaster}
Probab=77.76 E-value=2.4 Score=28.93 Aligned_cols=45 Identities=18% Similarity=0.257 Sum_probs=31.0
Q ss_pred CCcCCHHHHHHHHhhhhccCCCCHHHHHHHHHHhCCChhhhhhHhh
Q 022964 53 KRRLTVDQVQFLEKSFEVENKLEPERKIQLAKDLGLQPRQVAIWFQ 98 (289)
Q Consensus 53 R~R~T~eQl~~LE~~F~~~~~P~~~~r~~LA~~LgLs~rQVkvWFQ 98 (289)
+++|+.+....+...+... ........++|+++|++...|..|..
T Consensus 3 r~~ys~efK~~~~~~~~~g-~s~~~~~~~vA~~~gIs~~tl~~W~~ 47 (59)
T 2glo_A 3 RRIFTPHFKLQVLESYRND-NDCKGNQRATARKYNIHRRQIQKWLQ 47 (59)
T ss_dssp CCCCCHHHHHHHHHHHHHC-TTTTTCHHHHHHHTTSCHHHHHHHHT
T ss_pred CCcCCHHHHHHHHHHHHcC-CCcchHHHHHHHHHCcCHHHHHHHHH
Confidence 4568888876664444432 22112366899999999999999964
No 92
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=77.47 E-value=8.3 Score=29.19 Aligned_cols=45 Identities=22% Similarity=0.309 Sum_probs=23.6
Q ss_pred HHHHHHHHhhhhhhHHHhhHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 022964 109 LEKDYDVLQNSYNSLKADYDNLFKEKEKLKAEVLKLTDKLQVKEK 153 (289)
Q Consensus 109 ~e~e~~~l~~~~~~lk~~~~~l~~ene~L~~e~~~l~~~l~~~~~ 153 (289)
++.+.+.|+..+..|..++..+....+.|..|+.+|+.....-..
T Consensus 25 LqmEieELKekN~~L~~e~~e~~~~~~~L~~en~qLk~E~~~wq~ 69 (81)
T 2jee_A 25 LQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQE 69 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555555544444334466677777666554443
No 93
>1hlv_A CENP-B, major centromere autoantigen B; helix-turn-helix, protein-DNA complex, riken structural genomics/proteomics initiative, RSGI; 2.50A {Homo sapiens} SCOP: a.4.1.7 a.4.1.7 PDB: 1bw6_A
Probab=76.52 E-value=5.3 Score=30.95 Aligned_cols=50 Identities=24% Similarity=0.395 Sum_probs=37.4
Q ss_pred CCCCcCCHHHHHHHHhhhhccCCCCHHHHHHHHHHhCCChhhhhhHhhhhHHH
Q 022964 51 EKKRRLTVDQVQFLEKSFEVENKLEPERKIQLAKDLGLQPRQVAIWFQNRRAR 103 (289)
Q Consensus 51 rkR~R~T~eQl~~LE~~F~~~~~P~~~~r~~LA~~LgLs~rQVkvWFQNRRak 103 (289)
++|++||.++...+-..+..+.... ..+||+.+|++...|..|..+++..
T Consensus 3 ~~r~~~t~e~K~~iv~~~~~~g~~~---~~~~A~~~gvs~stl~~~~~~~~~~ 52 (131)
T 1hlv_A 3 PKRRQLTFREKSRIIQEVEENPDLR---KGEIARRFNIPPSTLSTILKNKRAI 52 (131)
T ss_dssp CSSCCCCHHHHHHHHHHHHHCTTSC---HHHHHHHHTCCHHHHHHHHHTHHHH
T ss_pred CcceeCCHHHHHHHHHHHHHCCCCc---HHHHHHHhCCCHHHHHHHHhchhhh
Confidence 4567899999877766664444443 3368999999999999998776553
No 94
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=73.52 E-value=7.3 Score=28.57 Aligned_cols=52 Identities=23% Similarity=0.254 Sum_probs=37.5
Q ss_pred hhhHhhhhHHHHHHHHHHHHHHHHhhhhhhHHHhhHHHHHHHHHHHHHHHHHH
Q 022964 93 VAIWFQNRRARWKTKQLEKDYDVLQNSYNSLKADYDNLFKEKEKLKAEVLKLT 145 (289)
Q Consensus 93 VkvWFQNRRak~Krk~~e~e~~~l~~~~~~lk~~~~~l~~ene~L~~e~~~l~ 145 (289)
-+.=|..|+... .+.++.....|...+..+..++..|...+..|..|+..|+
T Consensus 19 AQRafReRK~~~-i~~LE~~v~~le~~~~~l~~en~~Lr~~i~~L~~El~~lr 70 (70)
T 1gd2_E 19 AQRAFRKRKEDH-LKALETQVVTLKELHSSTTLENDQLRQKVRQLEEELRILK 70 (70)
T ss_dssp HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 344455444433 3456777778888888899999999999999999987654
No 95
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=71.79 E-value=5.7 Score=25.25 Aligned_cols=25 Identities=20% Similarity=0.359 Sum_probs=20.6
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHh
Q 022964 125 ADYDNLFKEKEKLKAEVLKLTDKLQ 149 (289)
Q Consensus 125 ~~~~~l~~ene~L~~e~~~l~~~l~ 149 (289)
...+.|..+|..|+.||.+|++-|.
T Consensus 8 ~kVEeLl~~n~~Le~eV~rLk~ll~ 32 (34)
T 2oxj_A 8 XKVXELLXKNXHLEXEVXRLKXLVX 32 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHh
Confidence 4456788999999999999998764
No 96
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=71.68 E-value=5.8 Score=27.51 Aligned_cols=31 Identities=26% Similarity=0.546 Sum_probs=15.6
Q ss_pred HHHHHHhhhhhhHHHhhHHHHHHHHHHHHHH
Q 022964 111 KDYDVLQNSYNSLKADYDNLFKEKEKLKAEV 141 (289)
Q Consensus 111 ~e~~~l~~~~~~lk~~~~~l~~ene~L~~e~ 141 (289)
.+++.|+..+..|+..+..|.++++.|++++
T Consensus 19 ~d~eaLk~E~~eLk~k~~~L~~~~~el~~~l 49 (53)
T 2yy0_A 19 PEIELLRLELAEMKEKYEAIVEENKKLKAKL 49 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555555555555555443
No 97
>2elh_A CG11849-PA, LD40883P; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Drosophila melanogaster}
Probab=69.79 E-value=12 Score=27.42 Aligned_cols=43 Identities=19% Similarity=0.290 Sum_probs=30.5
Q ss_pred CCCCcCCHHHHHHHHhhhhccCCCCHHHHHHHHHHhCCChhhhhhHhh
Q 022964 51 EKKRRLTVDQVQFLEKSFEVENKLEPERKIQLAKDLGLQPRQVAIWFQ 98 (289)
Q Consensus 51 rkR~R~T~eQl~~LE~~F~~~~~P~~~~r~~LA~~LgLs~rQVkvWFQ 98 (289)
+++++++.++....-..+.. .. -..++|+.+|++...|..|..
T Consensus 18 ~~~~~ys~e~k~~~v~~~~~-g~----s~~~iA~~~gIs~sTl~rW~k 60 (87)
T 2elh_A 18 RPLRSLTPRDKIHAIQRIHD-GE----SKASVARDIGVPESTLRGWCK 60 (87)
T ss_dssp SCCSSCCHHHHHHHHHHHHH-TC----CHHHHHHHHTCCHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHC-CC----CHHHHHHHHCcCHHHHHHHHH
Confidence 34557999886555455542 22 256889999999999999963
No 98
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=66.85 E-value=23 Score=24.69 Aligned_cols=40 Identities=23% Similarity=0.218 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhHHHhhHHHHHHHHHHHHH
Q 022964 101 RARWKTKQLEKDYDVLQNSYNSLKADYDNLFKEKEKLKAE 140 (289)
Q Consensus 101 Rak~Krk~~e~e~~~l~~~~~~lk~~~~~l~~ene~L~~e 140 (289)
|-+.+...++.....|...+..|..+...|..|+..|+..
T Consensus 19 rKk~~~~~Le~~~~~L~~~n~~L~~~i~~L~~e~~~Lk~~ 58 (61)
T 1t2k_D 19 KRKVWVQSLEKKAEDLSSLNGQLQSEVTLLRNEVAQLKQL 58 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444445555555555555555555555555555544
No 99
>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A*
Probab=66.59 E-value=10 Score=23.97 Aligned_cols=24 Identities=4% Similarity=0.184 Sum_probs=20.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHh
Q 022964 126 DYDNLFKEKEKLKAEVLKLTDKLQ 149 (289)
Q Consensus 126 ~~~~l~~ene~L~~e~~~l~~~l~ 149 (289)
..+.|..+|..|+.||.+|++-|.
T Consensus 8 KvEeLl~~~~~Le~EV~RLk~lL~ 31 (33)
T 3c3g_A 8 KLXEIXSKXYHXENXLARIKXLLX 31 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHc
Confidence 445688899999999999998765
No 100
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=66.13 E-value=9 Score=23.58 Aligned_cols=40 Identities=5% Similarity=0.132 Sum_probs=28.2
Q ss_pred cCCHHHHHHHHhhhhccCCCCHHHHHHHHHHhCCChhhhhhHhhh
Q 022964 55 RLTVDQVQFLEKSFEVENKLEPERKIQLAKDLGLQPRQVAIWFQN 99 (289)
Q Consensus 55 R~T~eQl~~LE~~F~~~~~P~~~~r~~LA~~LgLs~rQVkvWFQN 99 (289)
.++.++...+...+... . ...++|+.+|++...|..|...
T Consensus 5 ~l~~~~~~~i~~~~~~g-~----s~~~IA~~lgis~~Tv~~~~~~ 44 (51)
T 1tc3_C 5 ALSDTERAQLDVMKLLN-V----SLHEMSRKISRSRHCIRVYLKD 44 (51)
T ss_dssp CCCHHHHHHHHHHHHTT-C----CHHHHHHHHTCCHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHcC-C----CHHHHHHHHCcCHHHHHHHHhh
Confidence 46777665554555432 2 2568899999999999999853
No 101
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=65.63 E-value=8.1 Score=24.44 Aligned_cols=25 Identities=24% Similarity=0.357 Sum_probs=20.2
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHh
Q 022964 125 ADYDNLFKEKEKLKAEVLKLTDKLQ 149 (289)
Q Consensus 125 ~~~~~l~~ene~L~~e~~~l~~~l~ 149 (289)
...+.|..+|..|+.|+.+|++-|.
T Consensus 7 ~kVEeLl~~n~~Le~EV~RLk~Ll~ 31 (33)
T 3m48_A 7 AKVEELLSKNWNLENEVARLKKLVG 31 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHhh
Confidence 3456788999999999999987654
No 102
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=65.23 E-value=11 Score=23.93 Aligned_cols=25 Identities=8% Similarity=0.148 Sum_probs=20.5
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHh
Q 022964 125 ADYDNLFKEKEKLKAEVLKLTDKLQ 149 (289)
Q Consensus 125 ~~~~~l~~ene~L~~e~~~l~~~l~ 149 (289)
...+.|..+|..|+.||.+|++-|.
T Consensus 8 dKVEeLl~~~~~Le~EV~RLk~ll~ 32 (34)
T 3c3f_A 8 XKLEXILSXLYHXENEXARIXKLLX 32 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHh
Confidence 3455688899999999999998765
No 103
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=63.79 E-value=34 Score=25.40 Aligned_cols=39 Identities=23% Similarity=0.219 Sum_probs=29.4
Q ss_pred HHHHHHhhhhhhHHHhhHHHHHHHHHHHHHHHHHHHHHh
Q 022964 111 KDYDVLQNSYNSLKADYDNLFKEKEKLKAEVLKLTDKLQ 149 (289)
Q Consensus 111 ~e~~~l~~~~~~lk~~~~~l~~ene~L~~e~~~l~~~l~ 149 (289)
+-.+.-+.....+......|..||..|+.++..|+..+.
T Consensus 29 rSR~krk~r~~e~~~r~~~L~~eN~~L~~~v~~L~~E~~ 67 (78)
T 1gu4_A 29 KSRDKAKMRNLETQHKVLELTAENERLQKKVEQLSRELS 67 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334555666667777888888899999999888887765
No 104
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=63.39 E-value=31 Score=26.25 Aligned_cols=57 Identities=18% Similarity=0.318 Sum_probs=30.4
Q ss_pred hhhhhHhhhhHHHHHHHHHHHHHHHHhhhhhhHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 022964 91 RQVAIWFQNRRARWKTKQLEKDYDVLQNSYNSLKADYDNLFKEKEKLKAEVLKLTDKL 148 (289)
Q Consensus 91 rQVkvWFQNRRak~Krk~~e~e~~~l~~~~~~lk~~~~~l~~ene~L~~e~~~l~~~l 148 (289)
.++..|-+....+.+. .-+.+...|+...+.+..++..|..+.+.|..++.+++.+|
T Consensus 37 ~~i~~l~~~~~~~~~~-~ye~~i~~Lr~~i~~~~~ek~~l~~e~dnl~~~~~~~k~KL 93 (93)
T 3s4r_A 37 AELEQLKGQGKSRLGD-LYEEEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLREKL 93 (93)
T ss_dssp HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHhhccCCCcHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 3445554433333322 22444555556666666666666666666666666666553
No 105
>1jko_C HIN recombinase, DNA-invertase HIN; water-mediated recognition, protein-DNA complex, A10G mutant, DNA binding protein/DNA complex; 2.24A {Synthetic} SCOP: a.4.1.2 PDB: 1ijw_C* 1jj6_C* 1jj8_C* 1hcr_A 1jkp_C 1jkq_C 1jkr_C
Probab=62.49 E-value=4.4 Score=25.63 Aligned_cols=41 Identities=15% Similarity=0.221 Sum_probs=28.6
Q ss_pred cCCHHHHHHHHhhhhccCCCCHHHHHHHHHHhCCChhhhhhHhhhh
Q 022964 55 RLTVDQVQFLEKSFEVENKLEPERKIQLAKDLGLQPRQVAIWFQNR 100 (289)
Q Consensus 55 R~T~eQl~~LE~~F~~~~~P~~~~r~~LA~~LgLs~rQVkvWFQNR 100 (289)
.++.++...+...+... ....+||+.+|++...|..|+...
T Consensus 5 ~~~~~~~~~i~~l~~~g-----~s~~~ia~~lgvs~~Tv~r~l~~~ 45 (52)
T 1jko_C 5 AINKHEQEQISRLLEKG-----HPRQQLAIIFGIGVSTLYRYFPAS 45 (52)
T ss_dssp SSCTTHHHHHHHHHHTT-----CCHHHHHHTTSCCHHHHHHHSCTT
T ss_pred CCCHHHHHHHHHHHHcC-----CCHHHHHHHHCCCHHHHHHHHHHc
Confidence 36666655555555433 235688999999999999998643
No 106
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=62.01 E-value=37 Score=25.60 Aligned_cols=43 Identities=19% Similarity=0.318 Sum_probs=25.1
Q ss_pred HHHHHHHHHHhhhhhhHHHhhHHHHHHHHHHHHHHHHHHHHHh
Q 022964 107 KQLEKDYDVLQNSYNSLKADYDNLFKEKEKLKAEVLKLTDKLQ 149 (289)
Q Consensus 107 k~~e~e~~~l~~~~~~lk~~~~~l~~ene~L~~e~~~l~~~l~ 149 (289)
..++.....|......++...+.|..+|++|+.|...-+++|.
T Consensus 30 eELKekN~~L~~e~~e~~~~~~~L~~en~qLk~E~~~wq~Rl~ 72 (81)
T 2jee_A 30 EELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQ 72 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445556666666666666666666666666555555443
No 107
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=61.62 E-value=39 Score=25.26 Aligned_cols=51 Identities=16% Similarity=0.265 Sum_probs=36.4
Q ss_pred hhHHHHHHHHHHHHHHHHhhhhhhHHHhhHHHHHHHHHHHHHHHHHHHHHh
Q 022964 99 NRRARWKTKQLEKDYDVLQNSYNSLKADYDNLFKEKEKLKAEVLKLTDKLQ 149 (289)
Q Consensus 99 NRRak~Krk~~e~e~~~l~~~~~~lk~~~~~l~~ene~L~~e~~~l~~~l~ 149 (289)
+||.+.+-.+...+.++|+...+.|+.-...|..-..+|+.|...|...+.
T Consensus 13 Rrrl~E~~~q~qaEl~sLrrT~~EL~~G~~KL~~mi~~l~~E~~~l~~ni~ 63 (78)
T 3iv1_A 13 RWRMKEEMDRAQAELNALKRTEEDLKKGHQKLEEMVTRLDQEVAEVDKNIE 63 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 467777777777788888777777777777777766666666666655544
No 108
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=61.56 E-value=16 Score=23.46 Aligned_cols=28 Identities=32% Similarity=0.293 Sum_probs=22.1
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHhh
Q 022964 123 LKADYDNLFKEKEKLKAEVLKLTDKLQV 150 (289)
Q Consensus 123 lk~~~~~l~~ene~L~~e~~~l~~~l~~ 150 (289)
|....+.|..+|..|+.||.+|++.+..
T Consensus 6 LE~KVEeLl~~~~~Le~eV~RLk~ll~~ 33 (36)
T 1kd8_B 6 LKAKVEELKSKLWHLKNKVARLKKKNAE 33 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHhcc
Confidence 4445567888999999999999987753
No 109
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=60.21 E-value=41 Score=23.61 Aligned_cols=28 Identities=32% Similarity=0.476 Sum_probs=13.4
Q ss_pred hhhHHHhhHHHHHHHHHHHHHHHHHHHH
Q 022964 120 YNSLKADYDNLFKEKEKLKAEVLKLTDK 147 (289)
Q Consensus 120 ~~~lk~~~~~l~~ene~L~~e~~~l~~~ 147 (289)
...|......|..+|..|+.++..|+..
T Consensus 25 ~~~Le~~v~~L~~~n~~L~~ei~~L~~e 52 (63)
T 2wt7_A 25 TDTLQAETDQLEDEKSALQTEIANLLKE 52 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444555555555554444443
No 110
>3hug_A RNA polymerase sigma factor; ECF sigma factor, zinc binding anti-sigma factor, oxidative transcription regulation; 2.35A {Mycobacterium tuberculosis}
Probab=60.20 E-value=20 Score=26.20 Aligned_cols=46 Identities=17% Similarity=0.253 Sum_probs=33.7
Q ss_pred CCHHHHHHHHhhhhccCCCCHHHHHHHHHHhCCChhhhhhHhhhhHHHHHH
Q 022964 56 LTVDQVQFLEKSFEVENKLEPERKIQLAKDLGLQPRQVAIWFQNRRARWKT 106 (289)
Q Consensus 56 ~T~eQl~~LE~~F~~~~~P~~~~r~~LA~~LgLs~rQVkvWFQNRRak~Kr 106 (289)
++..+..+|...|-... .-.++|..||++...|+.+...-|.+.|+
T Consensus 38 L~~~~r~vl~l~~~~g~-----s~~eIA~~lgis~~tV~~~l~ra~~~Lr~ 83 (92)
T 3hug_A 38 LSAEHRAVIQRSYYRGW-----STAQIATDLGIAEGTVKSRLHYAVRALRL 83 (92)
T ss_dssp SCHHHHHHHHHHHTSCC-----CHHHHHHHHTSCHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHcCC-----CHHHHHHHHCcCHHHHHHHHHHHHHHHHH
Confidence 77888888777553332 35789999999999999988765555544
No 111
>2wuj_A Septum site-determining protein diviva; bacterial cell division, septation, cell cycle, sporulation; 1.40A {Bacillus subtilis} PDB: 2wuk_A
Probab=59.82 E-value=7.2 Score=27.21 Aligned_cols=29 Identities=24% Similarity=0.587 Sum_probs=18.1
Q ss_pred hhhHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 022964 120 YNSLKADYDNLFKEKEKLKAEVLKLTDKL 148 (289)
Q Consensus 120 ~~~lk~~~~~l~~ene~L~~e~~~l~~~l 148 (289)
.+.+..++..|..||..|+.++.+|+++|
T Consensus 29 Ld~v~~~~~~l~~e~~~L~~~~~~l~~~l 57 (57)
T 2wuj_A 29 LAQVRKDYEIVLRKKTELEAKVNELDERI 57 (57)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHC-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 34556677778888888888888877654
No 112
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=58.65 E-value=22 Score=22.84 Aligned_cols=28 Identities=21% Similarity=0.206 Sum_probs=21.7
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHhhh
Q 022964 124 KADYDNLFKEKEKLKAEVLKLTDKLQVK 151 (289)
Q Consensus 124 k~~~~~l~~ene~L~~e~~~l~~~l~~~ 151 (289)
-.....|..+|..|..||.+|++-+...
T Consensus 7 E~kVEeLl~~~~~Le~EV~RL~~ll~~~ 34 (36)
T 1kd8_A 7 EAEVEEIESEVWHLENEVARLEKENAEC 34 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHhccc
Confidence 3445668889999999999999877643
No 113
>3gp4_A Transcriptional regulator, MERR family; structural genomics, DNA-BI transcription regulator, PSI-2; 1.85A {Listeria monocytogenes str}
Probab=57.52 E-value=73 Score=25.58 Aligned_cols=82 Identities=15% Similarity=0.206 Sum_probs=45.8
Q ss_pred CCCcCCHHHHHHHHhhhhccCCCCHHHHHHHHHHhCCChhhhhhHhhhhHHHHHHHHHHHHHHHHhhhhhhHHHhhHHHH
Q 022964 52 KKRRLTVDQVQFLEKSFEVENKLEPERKIQLAKDLGLQPRQVAIWFQNRRARWKTKQLEKDYDVLQNSYNSLKADYDNLF 131 (289)
Q Consensus 52 kR~R~T~eQl~~LE~~F~~~~~P~~~~r~~LA~~LgLs~rQVkvWFQNRRak~Krk~~e~e~~~l~~~~~~lk~~~~~l~ 131 (289)
..+.|+.+++..|.. ....+.+|++-..|+..+...+.... ....-...|......+......|.
T Consensus 37 g~R~Y~~~dl~~l~~-------------I~~lr~~G~sL~eIk~~l~~~~~~~~--~~~~~~~~L~~~~~~l~~~i~~L~ 101 (142)
T 3gp4_A 37 GVRKFGAEDLRWILF-------------TRQMRRAGLSIEALIDYLALFREGEH--TLEARAELLKKQRIELKNRIDVMQ 101 (142)
T ss_dssp SCBCBCHHHHHHHHH-------------HHHHHHTTCCHHHHHHHHHHHHHCGG--GHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCeeeCHHHHHHHHH-------------HHHHHHcCCCHHHHHHHHHHHhccCC--CHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345699999999833 23357899999999888765432211 112223344444444444455555
Q ss_pred HHHHHHHHHHHHHHHHH
Q 022964 132 KEKEKLKAEVLKLTDKL 148 (289)
Q Consensus 132 ~ene~L~~e~~~l~~~l 148 (289)
...+.|...+...++.+
T Consensus 102 ~~~~~L~~~i~~~~~~~ 118 (142)
T 3gp4_A 102 EALDRLDFKIDNYDTHL 118 (142)
T ss_dssp HHHHHHHHHHHHHHHTH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 55555555444444433
No 114
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=56.43 E-value=19 Score=32.65 Aligned_cols=38 Identities=26% Similarity=0.250 Sum_probs=27.9
Q ss_pred HHHHHHHHHhhhhhhHHHhhHHHHHHHHHHHHHHHHHH
Q 022964 108 QLEKDYDVLQNSYNSLKADYDNLFKEKEKLKAEVLKLT 145 (289)
Q Consensus 108 ~~e~e~~~l~~~~~~lk~~~~~l~~ene~L~~e~~~l~ 145 (289)
.++.+...|...+.+|......++.|..+|+.|+.+|+
T Consensus 58 eL~~ql~~L~arNe~L~~~Lk~ar~El~~LkeElerL~ 95 (251)
T 3m9b_A 58 QLEARIDSLAARNSKLMETLKEARQQLLALREEVDRLG 95 (251)
T ss_dssp HHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 44556667777777777777777778888887777775
No 115
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=55.37 E-value=56 Score=26.62 Aligned_cols=42 Identities=19% Similarity=0.204 Sum_probs=24.5
Q ss_pred HHHHHHHHhhhhhhHHHhhHHHHHHHHHHHHHHHHHHHHHhh
Q 022964 109 LEKDYDVLQNSYNSLKADYDNLFKEKEKLKAEVLKLTDKLQV 150 (289)
Q Consensus 109 ~e~e~~~l~~~~~~lk~~~~~l~~ene~L~~e~~~l~~~l~~ 150 (289)
..++...|+.....+...++.+.++++.|+.++..|+.++..
T Consensus 87 ~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~~ 128 (138)
T 3hnw_A 87 KDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKNIVK 128 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555555555556666666666666666666655543
No 116
>2bni_A General control protein GCN4; four helix bundle, antiparallel four helix bundle acyl transferase; HET: TYZ; 1.5A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2ccn_A 1w5k_A* 2ccf_A 2cce_A 1w5j_A* 1uo2_A 1gcl_A 1uo1_A 1unv_A 1uo0_A 1unt_A 1uo5_A 1unz_A 1unx_A 1unu_A 1unw_A 1uo4_A 1uo3_A 1uny_A 1u9f_A* ...
Probab=53.83 E-value=19 Score=22.88 Aligned_cols=24 Identities=8% Similarity=0.293 Sum_probs=19.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHh
Q 022964 126 DYDNLFKEKEKLKAEVLKLTDKLQ 149 (289)
Q Consensus 126 ~~~~l~~ene~L~~e~~~l~~~l~ 149 (289)
..+.|..+|..|..||.+|++-|.
T Consensus 9 KvEeLl~~~~~L~~EV~RLk~lL~ 32 (34)
T 2bni_A 9 KLEEILSKGHHICNELARIKKLLG 32 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHccHHHHHHHHHHHHHhc
Confidence 345688899999999999997664
No 117
>1s7o_A Hypothetical UPF0122 protein SPY1201/SPYM3_0842/SPS1042/SPYM18_1152; putative DNA binding protein, structural genomics; 2.31A {Streptococcus pyogenes serotype M3} SCOP: a.4.13.3
Probab=53.12 E-value=71 Score=24.61 Aligned_cols=47 Identities=17% Similarity=0.235 Sum_probs=35.2
Q ss_pred cCCHHHHHHHHhhhhccCCCCHHHHHHHHHHhCCChhhhhhHhhhhHHHHHH
Q 022964 55 RLTVDQVQFLEKSFEVENKLEPERKIQLAKDLGLQPRQVAIWFQNRRARWKT 106 (289)
Q Consensus 55 R~T~eQl~~LE~~F~~~~~P~~~~r~~LA~~LgLs~rQVkvWFQNRRak~Kr 106 (289)
.+++.+..++...|.... ...++|..+|++...|+.|...-|.+.++
T Consensus 22 ~L~~~~r~vl~l~y~~g~-----s~~EIA~~lgiS~~tV~~~l~ra~~kLr~ 68 (113)
T 1s7o_A 22 LLTDKQMNYIELYYADDY-----SLAEIADEFGVSRQAVYDNIKRTEKILET 68 (113)
T ss_dssp GSCHHHHHHHHHHHHTCC-----CHHHHHHHHTCCHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHcCC-----CHHHHHHHHCcCHHHHHHHHHHHHHHHHH
Confidence 477888888877654332 35789999999999999999766655554
No 118
>3gpv_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.90A {Bacillus thuringiensis serovarkonkukian}
Probab=52.74 E-value=72 Score=25.74 Aligned_cols=76 Identities=14% Similarity=0.230 Sum_probs=42.6
Q ss_pred CCCcCCHHHHHHHHhhhhccCCCCHHHHHHHHHHhCCChhhhhhHhhhhHHHHHHHHHHHHHHHHhhhhhhHHHhhHHHH
Q 022964 52 KKRRLTVDQVQFLEKSFEVENKLEPERKIQLAKDLGLQPRQVAIWFQNRRARWKTKQLEKDYDVLQNSYNSLKADYDNLF 131 (289)
Q Consensus 52 kR~R~T~eQl~~LE~~F~~~~~P~~~~r~~LA~~LgLs~rQVkvWFQNRRak~Krk~~e~e~~~l~~~~~~lk~~~~~l~ 131 (289)
..+.|+.+++..|.. ....+.+|++-..|+..+...+..... ... ...-|......|.
T Consensus 51 g~R~Y~~~dl~~l~~-------------I~~lr~~G~sL~eIk~~l~~~~~~~~~--~~~-------~~~~l~~~~~~l~ 108 (148)
T 3gpv_A 51 GDRIFNEEALKYLEM-------------ILCLKNTGMPIQKIKQFIDWSMEGDST--ILH-------RLKLMKQQEANVL 108 (148)
T ss_dssp CCEEBCHHHHHHHHH-------------HHHHHTTTCCHHHHHHHHHHHHHCGGG--HHH-------HHHHHHHHHHHHH
T ss_pred CCeecCHHHHHHHHH-------------HHHHHHcCCCHHHHHHHHHhhhcCCCC--HHH-------HHHHHHHHHHHHH
Confidence 345699999998832 333588999999999988754332111 111 1122333344455
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 022964 132 KEKEKLKAEVLKLTDKLQ 149 (289)
Q Consensus 132 ~ene~L~~e~~~l~~~l~ 149 (289)
++.+.|+.....|..++.
T Consensus 109 ~~i~~L~~~~~~L~~~i~ 126 (148)
T 3gpv_A 109 QLIQDTEKNLKKIQQKIA 126 (148)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 555555555555554444
No 119
>2hy6_A General control protein GCN4; protein design, parallel heptamer, protein structure, biosyn protein; 1.25A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2nrn_A 3crp_A 2b1f_A 3crp_B 2ipz_A 3ck4_A 3ck4_B 2b22_A 1ce9_A
Probab=52.64 E-value=24 Score=22.38 Aligned_cols=25 Identities=16% Similarity=0.217 Sum_probs=20.3
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHh
Q 022964 125 ADYDNLFKEKEKLKAEVLKLTDKLQ 149 (289)
Q Consensus 125 ~~~~~l~~ene~L~~e~~~l~~~l~ 149 (289)
...+.|..+|..|..||.+|++-|.
T Consensus 8 dkVEeLl~~~~~Le~eV~RL~~ll~ 32 (34)
T 2hy6_A 8 DAVEELASANYHLANAVARLAKAVG 32 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHhc
Confidence 3455688899999999999998765
No 120
>1r8e_A Multidrug-efflux transporter regulator; protein-DNA complex, MERR-family transcription activator, MU binding protein; HET: P4P; 2.40A {Bacillus subtilis} SCOP: a.6.1.3 d.60.1.1 PDB: 1exi_A* 1exj_A* 3iao_A 3q5p_A* 3d71_A* 3q3d_A* 3q1m_A* 3q2y_A* 3q5r_A* 3q5s_A* 3d70_A 3d6z_A* 3d6y_A* 1bow_A 2bow_A*
Probab=52.23 E-value=58 Score=28.15 Aligned_cols=35 Identities=20% Similarity=0.093 Sum_probs=27.0
Q ss_pred CCcCCHHHHHHHHhhhhccCCCCHHHHHHHHHHhCCChhhhhhHhhhh
Q 022964 53 KRRLTVDQVQFLEKSFEVENKLEPERKIQLAKDLGLQPRQVAIWFQNR 100 (289)
Q Consensus 53 R~R~T~eQl~~LE~~F~~~~~P~~~~r~~LA~~LgLs~rQVkvWFQNR 100 (289)
.|.++..++..|. .....+.+|++-.+|+..+.++
T Consensus 42 ~R~y~~~~~~~l~-------------~i~~l~~~g~~l~~i~~~~~~~ 76 (278)
T 1r8e_A 42 YRYYTDSQLIHLD-------------LIKSLKYIGTPLEEMKKAQDLE 76 (278)
T ss_dssp CEEEETGGGGHHH-------------HHHHHHHTTCCHHHHHHHTTSC
T ss_pred ccccCHHHHHHHH-------------HHHHHHHCCCCHHHHHHHHHhC
Confidence 4458999988883 3334589999999999998765
No 121
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=52.23 E-value=21 Score=24.98 Aligned_cols=31 Identities=13% Similarity=0.210 Sum_probs=18.3
Q ss_pred hhhhhHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 022964 118 NSYNSLKADYDNLFKEKEKLKAEVLKLTDKL 148 (289)
Q Consensus 118 ~~~~~lk~~~~~l~~ene~L~~e~~~l~~~l 148 (289)
.....|......|..+|..|+.++..|+..+
T Consensus 22 ~~~~~Le~~v~~L~~~n~~L~~~v~~L~~e~ 52 (62)
T 1jnm_A 22 ERIARLEEKVKTLKAQNSELASTANMLREQV 52 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555666666666666666666665544
No 122
>1xsv_A Hypothetical UPF0122 protein SAV1236; helix-turn-helix, putative DNA-binding protein, signal recognition particle, unknown function; 1.70A {Staphylococcus aureus subsp} SCOP: a.4.13.3
Probab=51.46 E-value=54 Score=25.20 Aligned_cols=47 Identities=15% Similarity=0.095 Sum_probs=34.5
Q ss_pred cCCHHHHHHHHhhhhccCCCCHHHHHHHHHHhCCChhhhhhHhhhhHHHHHH
Q 022964 55 RLTVDQVQFLEKSFEVENKLEPERKIQLAKDLGLQPRQVAIWFQNRRARWKT 106 (289)
Q Consensus 55 R~T~eQl~~LE~~F~~~~~P~~~~r~~LA~~LgLs~rQVkvWFQNRRak~Kr 106 (289)
.++..+..+|...|-... .-.++|..+|++...|+.+...-|.+.+.
T Consensus 25 ~L~~~~r~vl~l~~~~g~-----s~~EIA~~lgiS~~tV~~~l~ra~~kLr~ 71 (113)
T 1xsv_A 25 LLTNKQRNYLELFYLEDY-----SLSEIADTFNVSRQAVYDNIRRTGDLVED 71 (113)
T ss_dssp GSCHHHHHHHHHHHTSCC-----CHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHcCC-----CHHHHHHHHCcCHHHHHHHHHHHHHHHHH
Confidence 367777777777654332 35688999999999999998766666554
No 123
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=51.01 E-value=31 Score=26.19 Aligned_cols=36 Identities=22% Similarity=0.219 Sum_probs=25.2
Q ss_pred HHHhhhhhhHHHhhHHHHHHHHHHHHHHHHHHHHHh
Q 022964 114 DVLQNSYNSLKADYDNLFKEKEKLKAEVLKLTDKLQ 149 (289)
Q Consensus 114 ~~l~~~~~~lk~~~~~l~~ene~L~~e~~~l~~~l~ 149 (289)
+.-+.....+......|..||..|+.++..|+..+.
T Consensus 32 ~krk~r~~e~~~r~~~Le~EN~~Lr~~v~~L~~E~~ 67 (87)
T 1hjb_A 32 DKAKMRNLETQHKVLELTAENERLQKKVEQLSRELS 67 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555566667777777777777777777777665
No 124
>2o8x_A Probable RNA polymerase sigma-C factor; promoter recognition, transcription regulation, helix-turn-H motif, transcription; 3.00A {Mycobacterium tuberculosis}
Probab=50.55 E-value=14 Score=25.05 Aligned_cols=47 Identities=17% Similarity=0.010 Sum_probs=34.1
Q ss_pred cCCHHHHHHHHhhhhccCCCCHHHHHHHHHHhCCChhhhhhHhhhhHHHHHH
Q 022964 55 RLTVDQVQFLEKSFEVENKLEPERKIQLAKDLGLQPRQVAIWFQNRRARWKT 106 (289)
Q Consensus 55 R~T~eQl~~LE~~F~~~~~P~~~~r~~LA~~LgLs~rQVkvWFQNRRak~Kr 106 (289)
.+++.+..+|...|-.. ..-.++|..+|++...|+.+...-|.+.++
T Consensus 15 ~L~~~~r~il~l~~~~g-----~s~~eIA~~lgis~~tv~~~~~ra~~~l~~ 61 (70)
T 2o8x_A 15 DLTTDQREALLLTQLLG-----LSYADAAAVCGCPVGTIRSRVARARDALLA 61 (70)
T ss_dssp SSCHHHHHHHHHHHTSC-----CCHHHHHHHHTSCHHHHHHHHHHHHHHHHC
T ss_pred hCCHHHHHHHHHHHHcC-----CCHHHHHHHHCcCHHHHHHHHHHHHHHHHH
Confidence 37788888887765433 235688999999999999988655555443
No 125
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=50.51 E-value=23 Score=27.76 Aligned_cols=31 Identities=23% Similarity=0.353 Sum_probs=20.8
Q ss_pred hhhhHHHhhHHHHHHHHHHHHHHHHHHHHHh
Q 022964 119 SYNSLKADYDNLFKEKEKLKAEVLKLTDKLQ 149 (289)
Q Consensus 119 ~~~~lk~~~~~l~~ene~L~~e~~~l~~~l~ 149 (289)
.+..|+...+.|..|+++|+.++..|..+|.
T Consensus 13 ~~~~lr~ei~~Le~E~~rLr~~~~~LE~~Le 43 (100)
T 1go4_E 13 EADTLRLKVEELEGERSRLEEEKRMLEAQLE 43 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666777777777777777766664
No 126
>1uo4_A General control protein GCN4; four helix bundle, cavity, iodobenzene; 1.70A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1uo3_A 1unt_A 1uo5_A 1unu_A 1unv_A 1uo1_A 2ccf_A 2cce_A 1unx_A 1unw_A 1w5j_A* 1w5k_A* 1u9f_A* 3f86_A* 3f87_A* 3hez_A* 3c3f_A*
Probab=50.31 E-value=24 Score=22.43 Aligned_cols=24 Identities=8% Similarity=0.237 Sum_probs=19.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHh
Q 022964 126 DYDNLFKEKEKLKAEVLKLTDKLQ 149 (289)
Q Consensus 126 ~~~~l~~ene~L~~e~~~l~~~l~ 149 (289)
..+.|..+|..|..|+.+|++-|.
T Consensus 9 KVEeLl~~n~~Le~EV~RLk~LL~ 32 (34)
T 1uo4_A 9 KGEEILSKLYHIENELARIKKLLG 32 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHc
Confidence 345688899999999999987654
No 127
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=50.30 E-value=49 Score=22.69 Aligned_cols=33 Identities=21% Similarity=0.399 Sum_probs=17.6
Q ss_pred HhhhhhhHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 022964 116 LQNSYNSLKADYDNLFKEKEKLKAEVLKLTDKL 148 (289)
Q Consensus 116 l~~~~~~lk~~~~~l~~ene~L~~e~~~l~~~l 148 (289)
++.....|...|..|......-+.++..|++.|
T Consensus 14 l~~~l~~L~~rN~rL~~~L~~AR~el~~Lkeel 46 (51)
T 3m91_A 14 LEARIDSLAARNSKLMETLKEARQQLLALREEV 46 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444445555555555555555555555555544
No 128
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=49.99 E-value=52 Score=23.13 Aligned_cols=40 Identities=28% Similarity=0.308 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhHHHhhHHHHHHHHHHHHH
Q 022964 101 RARWKTKQLEKDYDVLQNSYNSLKADYDNLFKEKEKLKAE 140 (289)
Q Consensus 101 Rak~Krk~~e~e~~~l~~~~~~lk~~~~~l~~ene~L~~e 140 (289)
|-+.+...++.....|...+..|......|..|+..|+.-
T Consensus 20 KKk~~~~~le~~~~~L~~~N~~L~~~i~~L~~E~~~Lk~l 59 (63)
T 1ci6_A 20 KKRAEQEALTGECKELEKKNEALKERADSLAKEIQYLKDL 59 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444455555555555555555555555555555443
No 129
>3w03_C DNA repair protein XRCC4; coiled-coil, NHEJ, DSBS repair, KU70/80, DNA-PKCS, DNA ligas binding protein; HET: DNA; 8.49A {Homo sapiens}
Probab=49.93 E-value=36 Score=29.34 Aligned_cols=36 Identities=17% Similarity=0.182 Sum_probs=22.6
Q ss_pred HHHHhhhhhhHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 022964 113 YDVLQNSYNSLKADYDNLFKEKEKLKAEVLKLTDKL 148 (289)
Q Consensus 113 ~~~l~~~~~~lk~~~~~l~~ene~L~~e~~~l~~~l 148 (289)
..-+-..+..|++.+..|.++|++|+.|..+..+++
T Consensus 147 id~~ld~~~~L~~~n~~LqkeNeRL~~E~n~~l~ql 182 (184)
T 3w03_C 147 ICYCLDTIAENQAKNEHLQKENERLLRDWNDVQGRF 182 (184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344445555666677777777777777766665554
No 130
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=48.10 E-value=52 Score=22.61 Aligned_cols=27 Identities=26% Similarity=0.251 Sum_probs=17.8
Q ss_pred hhHHHhhHHHHHHHHHHHHHHHHHHHH
Q 022964 121 NSLKADYDNLFKEKEKLKAEVLKLTDK 147 (289)
Q Consensus 121 ~~lk~~~~~l~~ene~L~~e~~~l~~~ 147 (289)
+.|-.....|..||..|+.++..|+..
T Consensus 25 ~~LE~~v~~L~~eN~~L~~~~~~L~~~ 51 (55)
T 1dh3_A 25 KSLENRVAVLENQNKTLIEELKALKDL 51 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455666777777777777777644
No 131
>1p4w_A RCSB; solution structure, DNA binding domain, DNA binding protein; NMR {Erwinia amylovora} SCOP: a.4.6.2
Probab=45.53 E-value=39 Score=25.54 Aligned_cols=47 Identities=15% Similarity=0.098 Sum_probs=35.2
Q ss_pred CCcCCHHHHHHHHhhhhccCCCCHHHHHHHHHHhCCChhhhhhHhhhhHHHHH
Q 022964 53 KRRLTVDQVQFLEKSFEVENKLEPERKIQLAKDLGLQPRQVAIWFQNRRARWK 105 (289)
Q Consensus 53 R~R~T~eQl~~LE~~F~~~~~P~~~~r~~LA~~LgLs~rQVkvWFQNRRak~K 105 (289)
...+|..+..+|...++-- ...++|..||++...|+.+..+-+.|..
T Consensus 32 ~~~Lt~re~~Vl~l~~~G~------s~~EIA~~L~iS~~TV~~~l~ri~~KLg 78 (99)
T 1p4w_A 32 DKRLSPKESEVLRLFAEGF------LVTEIAKKLNRSIKTISSQKKSAMMKLG 78 (99)
T ss_dssp SSSCCHHHHHHHHHHHHTC------CHHHHHHHHTSCHHHHHHHHHHHHHHHT
T ss_pred cCCCCHHHHHHHHHHHcCC------CHHHHHHHHCcCHHHHHHHHHHHHHHHC
Confidence 4459999999997765322 2378999999999999998875554444
No 132
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=45.06 E-value=37 Score=26.56 Aligned_cols=34 Identities=24% Similarity=0.318 Sum_probs=24.0
Q ss_pred HHHHHHhhhhhhHHHhhHHHHHHHHHHHHHHHHH
Q 022964 111 KDYDVLQNSYNSLKADYDNLFKEKEKLKAEVLKL 144 (289)
Q Consensus 111 ~e~~~l~~~~~~lk~~~~~l~~ene~L~~e~~~l 144 (289)
.++..++..++.|..+++.|.++++.|+.++.+.
T Consensus 12 e~~~~lr~ei~~Le~E~~rLr~~~~~LE~~Le~~ 45 (100)
T 1go4_E 12 EEADTLRLKVEELEGERSRLEEEKRMLEAQLERR 45 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566677777777777777777777777776553
No 133
>3c57_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 1.70A {Mycobacterium tuberculosis} PDB: 1zlk_A 1zlj_A
Probab=44.87 E-value=28 Score=25.72 Aligned_cols=47 Identities=19% Similarity=0.098 Sum_probs=35.6
Q ss_pred cCCHHHHHHHHhhhhccCCCCHHHHHHHHHHhCCChhhhhhHhhhhHHHHHHH
Q 022964 55 RLTVDQVQFLEKSFEVENKLEPERKIQLAKDLGLQPRQVAIWFQNRRARWKTK 107 (289)
Q Consensus 55 R~T~eQl~~LE~~F~~~~~P~~~~r~~LA~~LgLs~rQVkvWFQNRRak~Krk 107 (289)
.++..+..+|...+.-. ...++|..||++...|+.+..+-+.|.+..
T Consensus 27 ~Lt~~e~~vl~l~~~g~------s~~eIA~~l~is~~tV~~~l~r~~~kL~~~ 73 (95)
T 3c57_A 27 GLTDQERTLLGLLSEGL------TNKQIADRMFLAEKTVKNYVSRLLAKLGME 73 (95)
T ss_dssp CCCHHHHHHHHHHHTTC------CHHHHHHHHTCCHHHHHHHHHHHHHHHTCC
T ss_pred cCCHHHHHHHHHHHcCC------CHHHHHHHHCcCHHHHHHHHHHHHHHHcCC
Confidence 48999999988864322 247899999999999999887666655543
No 134
>3mzy_A RNA polymerase sigma-H factor; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 2.50A {Fusobacterium nucleatum subsp}
Probab=43.78 E-value=42 Score=25.75 Aligned_cols=46 Identities=11% Similarity=0.016 Sum_probs=31.2
Q ss_pred cCCHHHHHHHHhhhhccCCCCHHHHHHHHHHhCCChhhhhhHhhhhHHHHHH
Q 022964 55 RLTVDQVQFLEKSFEVENKLEPERKIQLAKDLGLQPRQVAIWFQNRRARWKT 106 (289)
Q Consensus 55 R~T~eQl~~LE~~F~~~~~P~~~~r~~LA~~LgLs~rQVkvWFQNRRak~Kr 106 (289)
.++..+..+|. .|- ....-.++|..||++...|+.+...-|.+.|+
T Consensus 109 ~L~~~~r~v~~-~~~-----~g~s~~EIA~~lgis~~tV~~~~~ra~~~Lr~ 154 (164)
T 3mzy_A 109 NFSKFEKEVLT-YLI-----RGYSYREIATILSKNLKSIDNTIQRIRKKSEE 154 (164)
T ss_dssp HSCHHHHHHHH-HHT-----TTCCHHHHHHHHTCCHHHHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHH-HHH-----cCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 36666666666 332 22346789999999999999988755555543
No 135
>1je8_A Nitrate/nitrite response regulator protein NARL; protein-DNA complex, two-component response regulator, helix-turn-helix, DNA bending; 2.12A {Escherichia coli} SCOP: a.4.6.2 PDB: 1zg1_A 1zg5_A
Probab=43.52 E-value=55 Score=23.39 Aligned_cols=48 Identities=17% Similarity=0.192 Sum_probs=35.9
Q ss_pred CcCCHHHHHHHHhhhhccCCCCHHHHHHHHHHhCCChhhhhhHhhhhHHHHHHH
Q 022964 54 RRLTVDQVQFLEKSFEVENKLEPERKIQLAKDLGLQPRQVAIWFQNRRARWKTK 107 (289)
Q Consensus 54 ~R~T~eQl~~LE~~F~~~~~P~~~~r~~LA~~LgLs~rQVkvWFQNRRak~Krk 107 (289)
..++..+..+|...+. . ....++|..||++...|+.+..+-+.|.+..
T Consensus 20 ~~Lt~~e~~vl~l~~~--g----~s~~eIA~~l~is~~tV~~~l~r~~~kL~~~ 67 (82)
T 1je8_A 20 NQLTPRERDILKLIAQ--G----LPNKMIARRLDITESTVKVHVKHMLKKMKLK 67 (82)
T ss_dssp GGSCHHHHHHHHHHTT--T----CCHHHHHHHHTSCHHHHHHHHHHHHHHTTCS
T ss_pred ccCCHHHHHHHHHHHc--C----CCHHHHHHHHCcCHHHHHHHHHHHHHHHcCC
Confidence 3599999999888432 1 2456899999999999999887666555543
No 136
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=43.24 E-value=72 Score=21.84 Aligned_cols=37 Identities=27% Similarity=0.266 Sum_probs=25.4
Q ss_pred HHHHHHHHHhhhhhhHHHhhHHHHHHHHHHHHHHHHH
Q 022964 108 QLEKDYDVLQNSYNSLKADYDNLFKEKEKLKAEVLKL 144 (289)
Q Consensus 108 ~~e~e~~~l~~~~~~lk~~~~~l~~ene~L~~e~~~l 144 (289)
.+......|...+..|-........+..+|+.++.+|
T Consensus 13 ~l~~~l~~L~~rN~rL~~~L~~AR~el~~Lkeele~L 49 (51)
T 3m91_A 13 QLEARIDSLAARNSKLMETLKEARQQLLALREEVDRL 49 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3445556667777777777777777777777777665
No 137
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=43.22 E-value=93 Score=24.65 Aligned_cols=46 Identities=13% Similarity=0.135 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHhhhhhhHHHh----hHHHHHHHHHHHHHHHHHHHHHh
Q 022964 104 WKTKQLEKDYDVLQNSYNSLKAD----YDNLFKEKEKLKAEVLKLTDKLQ 149 (289)
Q Consensus 104 ~Krk~~e~e~~~l~~~~~~lk~~----~~~l~~ene~L~~e~~~l~~~l~ 149 (289)
.+..++..+++.|+..|...+.+ ...|+.|...|+.....|+.++.
T Consensus 10 ~~~~~L~~E~e~~k~K~~~~~~e~~~~~~~Lq~El~~lr~~~~~l~~~iR 59 (111)
T 2v66_B 10 ADNQRLKYEVEALKEKLEHQYAQSYKQVSVLEDDLSQTRAIKEQLHKYVR 59 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555555555443 23355555555555555555443
No 138
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=43.14 E-value=89 Score=22.70 Aligned_cols=28 Identities=11% Similarity=0.195 Sum_probs=21.1
Q ss_pred hHHHhhHHHHHHHHHHHHHHHHHHHHHh
Q 022964 122 SLKADYDNLFKEKEKLKAEVLKLTDKLQ 149 (289)
Q Consensus 122 ~lk~~~~~l~~ene~L~~e~~~l~~~l~ 149 (289)
.|......|..+++.|+.++..|+.+|.
T Consensus 51 ~L~~~~~~l~~e~~~L~~~~~~L~~~l~ 78 (83)
T 1nkp_B 51 YMRRKNHTHQQDIDDLKRQNALLEQQVR 78 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566677777888888888888877764
No 139
>1fse_A GERE; helix-turn-helix DNA-binding protein transcriptional regulat transcription; 2.05A {Bacillus subtilis} SCOP: a.4.6.2
Probab=42.63 E-value=49 Score=22.35 Aligned_cols=47 Identities=17% Similarity=0.184 Sum_probs=34.6
Q ss_pred CcCCHHHHHHHHhhhhccCCCCHHHHHHHHHHhCCChhhhhhHhhhhHHHHHH
Q 022964 54 RRLTVDQVQFLEKSFEVENKLEPERKIQLAKDLGLQPRQVAIWFQNRRARWKT 106 (289)
Q Consensus 54 ~R~T~eQl~~LE~~F~~~~~P~~~~r~~LA~~LgLs~rQVkvWFQNRRak~Kr 106 (289)
..++..+...|...+. .+ ...++|..+|++...|..+..+-+.+.+.
T Consensus 10 ~~L~~~e~~il~~~~~--g~----s~~eIA~~l~is~~tV~~~~~~~~~kl~~ 56 (74)
T 1fse_A 10 PLLTKREREVFELLVQ--DK----TTKEIASELFISEKTVRNHISNAMQKLGV 56 (74)
T ss_dssp CCCCHHHHHHHHHHTT--TC----CHHHHHHHHTSCHHHHHHHHHHHHHHHTC
T ss_pred CCCCHHHHHHHHHHHc--CC----CHHHHHHHHCCCHHHHHHHHHHHHHHHCC
Confidence 3488999998888432 22 35679999999999999988765555443
No 140
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=42.42 E-value=30 Score=23.86 Aligned_cols=38 Identities=26% Similarity=0.280 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhHHHhhHHHHHHHHHHHHHH
Q 022964 101 RARWKTKQLEKDYDVLQNSYNSLKADYDNLFKEKEKLKAEV 141 (289)
Q Consensus 101 Rak~Krk~~e~e~~~l~~~~~~lk~~~~~l~~ene~L~~e~ 141 (289)
|.+.|++ ...+.|......|..+|..|..++..|+.++
T Consensus 15 rSR~RKk---~~~~~LE~~v~~L~~eN~~L~~~~~~L~~~~ 52 (55)
T 1dh3_A 15 ESRRKKK---EYVKSLENRVAVLENQNKTLIEELKALKDLY 52 (55)
T ss_dssp HHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4554443 2334555666677777777777777776543
No 141
>2rn7_A IS629 ORFA; helix, all alpha, unknown function, structural genomics, PSI-2, protein structure initiative; NMR {Shigella flexneri}
Probab=42.33 E-value=35 Score=25.38 Aligned_cols=46 Identities=15% Similarity=0.264 Sum_probs=30.6
Q ss_pred CCcCCHHHHHHHHhhh-hcc-CCCC-HHHHHHHHHHhCCChhhhhhHhh
Q 022964 53 KRRLTVDQVQFLEKSF-EVE-NKLE-PERKIQLAKDLGLQPRQVAIWFQ 98 (289)
Q Consensus 53 R~R~T~eQl~~LE~~F-~~~-~~P~-~~~r~~LA~~LgLs~rQVkvWFQ 98 (289)
+++||.++....-..+ ... .+.+ ......+|..+|+++..|..|..
T Consensus 4 ~~~ys~e~K~~~v~~~~~~~~~~~s~g~s~~~va~~~gIs~~tl~~W~~ 52 (108)
T 2rn7_A 4 NTRFSPEVRQRAVRMVLESQGEYDSQWATICSIAPKIGCTPETLRVWVR 52 (108)
T ss_dssp SCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHTSCHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHhcccccccccccHHHHHHHHCcCHHHHHHHHH
Confidence 4568888775443333 321 1222 24677899999999999999964
No 142
>1deb_A APC protein, adenomatous polyposis coli protein; coiled coil, tumor suppressor, structural protein; 2.40A {Homo sapiens} SCOP: h.1.18.1
Probab=39.92 E-value=42 Score=23.21 Aligned_cols=23 Identities=26% Similarity=0.403 Sum_probs=10.1
Q ss_pred hhhHHHhhHHHHHHHHHHHHHHH
Q 022964 120 YNSLKADYDNLFKEKEKLKAEVL 142 (289)
Q Consensus 120 ~~~lk~~~~~l~~ene~L~~e~~ 142 (289)
|+.|-+..+.|+.||-.|+.|+.
T Consensus 5 YdQL~~QVe~Lk~ENshLrrEL~ 27 (54)
T 1deb_A 5 YDQLLKQVEALKMENSNLRQELE 27 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHH
Confidence 33344444444444444444443
No 143
>3a5t_A Transcription factor MAFG; protein-DNA complex, BZIP factor, acetylation, DNA-binding, isopeptide bond, nucleus; 2.80A {Mus musculus}
Probab=39.50 E-value=2.3 Score=33.83 Aligned_cols=34 Identities=21% Similarity=0.300 Sum_probs=17.6
Q ss_pred HHHHHhhhhhhHHHhhHHHHHHHHHHHHHHHHHH
Q 022964 112 DYDVLQNSYNSLKADYDNLFKEKEKLKAEVLKLT 145 (289)
Q Consensus 112 e~~~l~~~~~~lk~~~~~l~~ene~L~~e~~~l~ 145 (289)
+...|......|..+.+.|..|+..|+.|+..++
T Consensus 59 ~~~~LE~e~~~L~~e~e~L~~En~~l~~E~~~lk 92 (107)
T 3a5t_A 59 QKEELEKQKAELQQEVEKLASENASMKLELDALR 92 (107)
T ss_dssp HHHHHHHHHTTTSSTTTTTTSTTSHHHHTTTSSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444544455555555555555555555554443
No 144
>1x3u_A Transcriptional regulatory protein FIXJ; helix-turn-helix; NMR {Sinorhizobium meliloti}
Probab=39.49 E-value=54 Score=22.59 Aligned_cols=46 Identities=28% Similarity=0.333 Sum_probs=33.7
Q ss_pred CCHHHHHHHHhhhhccCCCCHHHHHHHHHHhCCChhhhhhHhhhhHHHHHHH
Q 022964 56 LTVDQVQFLEKSFEVENKLEPERKIQLAKDLGLQPRQVAIWFQNRRARWKTK 107 (289)
Q Consensus 56 ~T~eQl~~LE~~F~~~~~P~~~~r~~LA~~LgLs~rQVkvWFQNRRak~Krk 107 (289)
++..+..+|...+. .+ ...++|..+|++...|+.+..+-+.|.+..
T Consensus 17 L~~~e~~vl~l~~~--g~----s~~eIA~~l~is~~tV~~~~~r~~~kl~~~ 62 (79)
T 1x3u_A 17 LSERERQVLSAVVA--GL----PNKSIAYDLDISPRTVEVHRANVMAKMKAK 62 (79)
T ss_dssp HCHHHHHHHHHHTT--TC----CHHHHHHHTTSCHHHHHHHHHHHHHHTTCC
T ss_pred CCHHHHHHHHHHHc--CC----CHHHHHHHHCcCHHHHHHHHHHHHHHHcCC
Confidence 77888888877432 22 345899999999999999887666666543
No 145
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=38.92 E-value=46 Score=24.55 Aligned_cols=30 Identities=17% Similarity=0.257 Sum_probs=22.8
Q ss_pred hhhHHHhhHHHHHHHHHHHHHHHHHHHHHh
Q 022964 120 YNSLKADYDNLFKEKEKLKAEVLKLTDKLQ 149 (289)
Q Consensus 120 ~~~lk~~~~~l~~ene~L~~e~~~l~~~l~ 149 (289)
+..|......+..+++.|+.++..|+.+|.
T Consensus 49 I~~L~~~~~~l~~e~~~L~~e~~~L~~~L~ 78 (80)
T 1nlw_A 49 IKKLEDSDRKAVHQIDQLQREQRHLKRQLE 78 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345667777788888888888888887764
No 146
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=37.56 E-value=1e+02 Score=26.58 Aligned_cols=51 Identities=16% Similarity=0.177 Sum_probs=26.3
Q ss_pred hhHHHHHHHHHHHHHHHHhhhhhhHHHh----hHHHHHHHHHHHHHHHHHHHHHh
Q 022964 99 NRRARWKTKQLEKDYDVLQNSYNSLKAD----YDNLFKEKEKLKAEVLKLTDKLQ 149 (289)
Q Consensus 99 NRRak~Krk~~e~e~~~l~~~~~~lk~~----~~~l~~ene~L~~e~~~l~~~l~ 149 (289)
|+-.+.+..++..+.+.++..+.....+ ...|..+...|+..+..|+.++.
T Consensus 58 ~~~L~~~~~~L~~E~e~~k~K~~~~~~e~~~~~~~Lq~el~~l~~~~~~l~~~ir 112 (189)
T 2v71_A 58 NRDLQADNQRLKYEVEALKEKLEHQYAQSYKQVSVLEDDLSQTRAIKEQLHKYVR 112 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444445555555555555555544 44455555555555555555543
No 147
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=37.52 E-value=1.3e+02 Score=24.44 Aligned_cols=46 Identities=15% Similarity=0.141 Sum_probs=28.3
Q ss_pred HHHHHHHHHHhhhhhhHHHhhHHHHHHHHHHHHHHHHHHHHHhhhh
Q 022964 107 KQLEKDYDVLQNSYNSLKADYDNLFKEKEKLKAEVLKLTDKLQVKE 152 (289)
Q Consensus 107 k~~e~e~~~l~~~~~~lk~~~~~l~~ene~L~~e~~~l~~~l~~~~ 152 (289)
..++.+.+.+......|+.+...++.+.+.++.++..|+.++..-.
T Consensus 78 ~~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~ 123 (138)
T 3hnw_A 78 DSLSLDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQ 123 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555666666666666666666666666666666655433
No 148
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=37.18 E-value=59 Score=25.46 Aligned_cols=21 Identities=38% Similarity=0.401 Sum_probs=11.7
Q ss_pred HhhHHHHHHHHHHHHHHHHHH
Q 022964 125 ADYDNLFKEKEKLKAEVLKLT 145 (289)
Q Consensus 125 ~~~~~l~~ene~L~~e~~~l~ 145 (289)
+....|..+.++|+.|+++|.
T Consensus 65 ~~v~eLe~everL~~ENq~L~ 85 (104)
T 3s9g_A 65 ARVRELELELDRLRAENLQLL 85 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHH
Confidence 344455556666666665554
No 149
>2xi8_A Putative transcription regulator; HTH DNA-binding motif; HET: GOL; 1.21A {Enterococcus faecalis} PDB: 2gzu_A 1utx_A* 2xj3_A 2xiu_A
Probab=37.10 E-value=25 Score=23.02 Aligned_cols=23 Identities=17% Similarity=0.118 Sum_probs=19.7
Q ss_pred HHHHHHHhCCChhhhhhHhhhhH
Q 022964 79 KIQLAKDLGLQPRQVAIWFQNRR 101 (289)
Q Consensus 79 r~~LA~~LgLs~rQVkvWFQNRR 101 (289)
..+||+.+|++...|..|..+++
T Consensus 17 ~~~lA~~~gis~~~i~~~e~g~~ 39 (66)
T 2xi8_A 17 QSELAALLEVSRQTINGIEKNKY 39 (66)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTSC
T ss_pred HHHHHHHHCcCHHHHHHHHcCCC
Confidence 46789999999999999998764
No 150
>2oto_A M protein; helical coiled coil, fibrinogen-binding, virulence factor, S active protein, toxin; 3.04A {Streptococcus pyogenes serotype M1} PDB: 2xny_M
Probab=36.88 E-value=1.2e+02 Score=24.62 Aligned_cols=21 Identities=29% Similarity=0.335 Sum_probs=10.5
Q ss_pred hhhHHHHHHHHHHHHHHHHhh
Q 022964 98 QNRRARWKTKQLEKDYDVLQN 118 (289)
Q Consensus 98 QNRRak~Krk~~e~e~~~l~~ 118 (289)
+|.+.+.+...+..+...+..
T Consensus 23 ~n~~l~~eN~~Lk~e~e~l~~ 43 (155)
T 2oto_A 23 QNIRLRHENKDLKARLENAME 43 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHH
Confidence 555555555455544444433
No 151
>3lph_A Protein REV; helix-loop-helix, RNA-binding arginine rich motif, protein oligomerization, AIDS, HOST cytoplasm, HOST nucleus; 2.50A {Human immunodeficiency virus type 1}
Probab=36.83 E-value=15 Score=27.10 Aligned_cols=36 Identities=31% Similarity=0.553 Sum_probs=23.8
Q ss_pred HHHHHhhhhccCCCCHHHHHHHHHHhCCChhhhhhHhhhhHHHHHHHHHH
Q 022964 61 VQFLEKSFEVENKLEPERKIQLAKDLGLQPRQVAIWFQNRRARWKTKQLE 110 (289)
Q Consensus 61 l~~LE~~F~~~~~P~~~~r~~LA~~LgLs~rQVkvWFQNRRak~Krk~~e 110 (289)
+..+.-.|+.++||.++--.+ | =.|||.+|+..+..
T Consensus 18 vRiIkiLyQSNP~P~p~GTrq-a-------------RRNRRRRWR~RQrQ 53 (72)
T 3lph_A 18 VRLIKFLYQSNPPPNPEGTRQ-A-------------RRNRRRRWRERQRQ 53 (72)
T ss_dssp HHHHHHHHHTCCCCCCCSCHH-H-------------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHccCCCCCCCCchH-H-------------HHHHHHHHHHHHHH
Confidence 455666789999987652222 1 15899999876543
No 152
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=36.53 E-value=1.1e+02 Score=24.67 Aligned_cols=62 Identities=19% Similarity=0.222 Sum_probs=31.7
Q ss_pred CCChhhhhhHhhhhHHHHHHHHHH-------HHHHHHhhhhhhHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 022964 87 GLQPRQVAIWFQNRRARWKTKQLE-------KDYDVLQNSYNSLKADYDNLFKEKEKLKAEVLKLTDKL 148 (289)
Q Consensus 87 gLs~rQVkvWFQNRRak~Krk~~e-------~e~~~l~~~~~~lk~~~~~l~~ene~L~~e~~~l~~~l 148 (289)
+|.....+.|=+|+-...-+..++ +....|+..+..|+........|.++|+.++..|.-.+
T Consensus 40 ~l~~~eaQAaTCNqTV~tL~~SL~~ekaq~q~~vqeLqgEI~~Lnq~Lq~a~ae~erlr~~~~~~~~r~ 108 (121)
T 3mq7_A 40 GFQDVEAQAATANHTVMALMASLDAEKAQGQKKVEELEGEITTLNHKLQDASAEVERLRRENQVLSVRI 108 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhhHh
Confidence 344556677888874333333332 33444444555555555555555555555555554443
No 153
>2p7v_B Sigma-70, RNA polymerase sigma factor RPOD; RSD, regulator of sigma 70, sigma 70 domain 4, transcription, regulation, helix-turn-helix; 2.60A {Escherichia coli} SCOP: a.4.13.2
Probab=36.08 E-value=63 Score=21.89 Aligned_cols=51 Identities=10% Similarity=0.153 Sum_probs=34.5
Q ss_pred cCCHHHHHHHHhhhhccCCCCHHHHHHHHHHhCCChhhhhhHhhhhHHHHHH
Q 022964 55 RLTVDQVQFLEKSFEVENKLEPERKIQLAKDLGLQPRQVAIWFQNRRARWKT 106 (289)
Q Consensus 55 R~T~eQl~~LE~~F~~~~~P~~~~r~~LA~~LgLs~rQVkvWFQNRRak~Kr 106 (289)
.+++.+..+|...|....+ ....-.++|..+|++...|+.+...-+.+.+.
T Consensus 5 ~L~~~er~il~l~~~l~~~-~g~s~~eIA~~lgis~~tV~~~~~ra~~kLr~ 55 (68)
T 2p7v_B 5 GLTAREAKVLRMRFGIDMN-TDYTLEEVGKQFDVTRERIRQIEAKALRKLRH 55 (68)
T ss_dssp CCCHHHHHHHHHHTTTTSS-SCCCHHHHHHHHTCCHHHHHHHHHHHHHGGGS
T ss_pred cCCHHHHHHHHHHHccCCC-CCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHH
Confidence 3778888888888732110 11224678999999999999987655554443
No 154
>3he5_A Synzip1; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=35.95 E-value=94 Score=20.56 Aligned_cols=39 Identities=26% Similarity=0.251 Sum_probs=16.3
Q ss_pred HHHHHHHHhhhhhhHHHhhHHHHHHHHHHHHHHHHHHHH
Q 022964 109 LEKDYDVLQNSYNSLKADYDNLFKEKEKLKAEVLKLTDK 147 (289)
Q Consensus 109 ~e~e~~~l~~~~~~lk~~~~~l~~ene~L~~e~~~l~~~ 147 (289)
++.+...|.+.+..|+..+---..-..-|..|+..|+.+
T Consensus 8 lenevaslenenetlkkknlhkkdliaylekeianlrkk 46 (49)
T 3he5_A 8 LENEVASLENENETLKKKNLHKKDLIAYLEKEIANLRKK 46 (49)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhcccHHHHHhcccHHHHHHHHHHHHHHHHHH
Confidence 344444444444444333333333333444555555444
No 155
>3b7h_A Prophage LP1 protein 11; structural genomics, PSI2, MCSG, protein structure initiative, midwest center for structural genomics; 2.00A {Lactobacillus plantarum WCFS1}
Probab=35.72 E-value=26 Score=23.88 Aligned_cols=23 Identities=26% Similarity=0.313 Sum_probs=19.9
Q ss_pred HHHHHHHhCCChhhhhhHhhhhH
Q 022964 79 KIQLAKDLGLQPRQVAIWFQNRR 101 (289)
Q Consensus 79 r~~LA~~LgLs~rQVkvWFQNRR 101 (289)
..+||+.+|++...|..|..+++
T Consensus 23 q~~lA~~~gis~~~i~~~e~g~~ 45 (78)
T 3b7h_A 23 INRVATLAGLNQSTVNAMFEGRS 45 (78)
T ss_dssp HHHHHHHHTCCHHHHHHHHCTTC
T ss_pred HHHHHHHHCcCHHHHHHHHcCCC
Confidence 46789999999999999998766
No 156
>1ku3_A Sigma factor SIGA; helix-turn-helix, transcription; 1.80A {Thermus aquaticus} SCOP: a.4.13.2 PDB: 1ku7_A 1rio_H 3n97_A*
Probab=35.43 E-value=64 Score=22.22 Aligned_cols=50 Identities=8% Similarity=0.084 Sum_probs=34.4
Q ss_pred cCCHHHHHHHHhhhhccCCCCHHHHHHHHHHhCCChhhhhhHhhhhHHHHH
Q 022964 55 RLTVDQVQFLEKSFEVENKLEPERKIQLAKDLGLQPRQVAIWFQNRRARWK 105 (289)
Q Consensus 55 R~T~eQl~~LE~~F~~~~~P~~~~r~~LA~~LgLs~rQVkvWFQNRRak~K 105 (289)
.++..+..+|...|-.... ....-.++|..+|++...|+.+...-+.+.+
T Consensus 10 ~L~~~er~il~l~~~l~~~-~~~s~~eIA~~l~is~~tV~~~~~ra~~kLr 59 (73)
T 1ku3_A 10 KLSEREAMVLKMRKGLIDG-REHTLEEVGAYFGVTRERIRQIENKALRKLK 59 (73)
T ss_dssp TSCHHHHHHHHHHHTTTTS-SCCCHHHHHHHHTCCHHHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHhcccC-CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 3788888888888752100 0112458899999999999998765554444
No 157
>1a93_A Coiled coil, LZ, MYC proto-oncogene protein; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Homo sapiens} SCOP: h.1.3.1 PDB: 2a93_A
Probab=35.31 E-value=60 Score=20.58 Aligned_cols=27 Identities=26% Similarity=0.430 Sum_probs=20.6
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHh
Q 022964 123 LKADYDNLFKEKEKLKAEVLKLTDKLQ 149 (289)
Q Consensus 123 lk~~~~~l~~ene~L~~e~~~l~~~l~ 149 (289)
+.++-..|..|++.|+.....|+.+|.
T Consensus 5 lq~dE~kLl~ekE~l~~r~eqL~~kLe 31 (34)
T 1a93_A 5 VQAEEQKLISEEDLLRKRREQLKHKLE 31 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455556788888888888888887765
No 158
>1iuf_A Centromere ABP1 protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; NMR {Schizosaccharomyces pombe} SCOP: a.4.1.7 a.4.1.7
Probab=34.70 E-value=61 Score=25.82 Aligned_cols=51 Identities=16% Similarity=0.293 Sum_probs=36.7
Q ss_pred CCCCCcCCHHHHHHHHhhh-hccCCCCHHHHHHH-HHHh--CCChhhhhhHhhhh
Q 022964 50 PEKKRRLTVDQVQFLEKSF-EVENKLEPERKIQL-AKDL--GLQPRQVAIWFQNR 100 (289)
Q Consensus 50 ~rkR~R~T~eQl~~LE~~F-~~~~~P~~~~r~~L-A~~L--gLs~rQVkvWFQNR 100 (289)
+++|+++|.+|...|-..+ +.++.....+...- ..++ |++...|..|..|+
T Consensus 6 ~~~R~~lT~~qK~~i~~~~~~~~~~~~q~~la~wa~~~f~~~is~stis~ilk~k 60 (144)
T 1iuf_A 6 KIKRRAITEHEKRALRHYFFQLQNRSGQQDLIEWFREKFGKDISQPSVSQILSSK 60 (144)
T ss_dssp CCSSSCCCSHHHHHHHHHHHSSSSCCCHHHHHHHHHHHHSSCCSSSSTTHHHHHH
T ss_pred CCcCccCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHCCCCcHHHHHHHHhhH
Confidence 5678889999999999998 66776655433332 2267 77888888888653
No 159
>2r1j_L Repressor protein C2; protein-DNA complex, helix-turn-helix, DNA-binding, transcription, transcription regulation; 1.53A {Enterobacteria phage P22} SCOP: a.35.1.2 PDB: 3jxb_C 3jxc_L 3jxd_L
Probab=34.45 E-value=22 Score=23.44 Aligned_cols=24 Identities=17% Similarity=0.386 Sum_probs=20.6
Q ss_pred HHHHHHHhCCChhhhhhHhhhhHH
Q 022964 79 KIQLAKDLGLQPRQVAIWFQNRRA 102 (289)
Q Consensus 79 r~~LA~~LgLs~rQVkvWFQNRRa 102 (289)
..+||+.+|++...|..|..+++.
T Consensus 21 ~~~lA~~~gis~~~i~~~e~g~~~ 44 (68)
T 2r1j_L 21 QAALGKMVGVSNVAISQWERSETE 44 (68)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTSSC
T ss_pred HHHHHHHHCCCHHHHHHHHcCCCC
Confidence 567999999999999999987553
No 160
>2wq1_A General control protein GCN4; TAA, nucleus, coiled coil, DNA-binding, protein export, ION coordination, polar core residues; 1.08A {Saccharomyces cerevisiae} PDB: 2wq0_A 2wq2_A 2wq3_A 2wpz_A 2wpy_A 1ij0_A 1ij1_A 1gcm_A 1rb5_A 1rb6_A 1rb1_A 1rb4_A 1swi_A 3k7z_A 1zii_A 1zij_A 1ij2_A 1ij3_A 1zil_A 1zim_A ...
Probab=34.19 E-value=66 Score=20.23 Aligned_cols=24 Identities=8% Similarity=-0.011 Sum_probs=19.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHh
Q 022964 126 DYDNLFKEKEKLKAEVLKLTDKLQ 149 (289)
Q Consensus 126 ~~~~l~~ene~L~~e~~~l~~~l~ 149 (289)
..+.|..+|..|..|+.+|++-|.
T Consensus 8 KVEell~~~~~le~EV~Rl~~ll~ 31 (33)
T 2wq1_A 8 KIEENTSKIYHNTNEIARNTKLVG 31 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHhhHHHHHHHHHHHHHhc
Confidence 345678889999999999987654
No 161
>2x7l_M HIV REV; nuclear export, immune system, post-transcriptional regulation; 3.17A {Human immunodeficiency virus type 3}
Probab=34.10 E-value=8.9 Score=30.75 Aligned_cols=34 Identities=32% Similarity=0.590 Sum_probs=22.4
Q ss_pred HHHHHhhhhccCCCCHHHHHHHHHHhCCChhhhhhHhhhhHHHHHHHH
Q 022964 61 VQFLEKSFEVENKLEPERKIQLAKDLGLQPRQVAIWFQNRRARWKTKQ 108 (289)
Q Consensus 61 l~~LE~~F~~~~~P~~~~r~~LA~~LgLs~rQVkvWFQNRRak~Krk~ 108 (289)
+..++-.|+.|+||.++--.+ | =.|||.|||..+
T Consensus 15 vRiIkiLyQSNPyP~peGTRq-a-------------RRNRRRRWR~RQ 48 (115)
T 2x7l_M 15 VRLIKFLYQSNPPPNPEGTRQ-A-------------RRNRRRRWRERQ 48 (115)
T ss_dssp HHHHHHHHHSSCCCCCCCCTT-T-------------HHHHHHHHHHHH
T ss_pred HHHHHHHHccCCCCCCCCchh-h-------------hHhHHHHHHHHH
Confidence 445566689999997642111 1 159999999765
No 162
>2a6c_A Helix-turn-helix motif; putative transcriptional regulator, structural genomics, JOI for structural genomics, JCSG; HET: CIT; 1.90A {Nitrosomonas europaea} SCOP: a.35.1.13
Probab=33.93 E-value=35 Score=24.14 Aligned_cols=24 Identities=17% Similarity=0.261 Sum_probs=20.8
Q ss_pred HHHHHHHhCCChhhhhhHhhhhHH
Q 022964 79 KIQLAKDLGLQPRQVAIWFQNRRA 102 (289)
Q Consensus 79 r~~LA~~LgLs~rQVkvWFQNRRa 102 (289)
..+||+.+|++...|..|..+++.
T Consensus 34 q~elA~~~gis~~~is~~e~g~~~ 57 (83)
T 2a6c_A 34 QFKAAELLGVTQPRVSDLMRGKID 57 (83)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTCGG
T ss_pred HHHHHHHHCcCHHHHHHHHcCCCC
Confidence 467999999999999999987763
No 163
>2b5a_A C.BCLI; helix-turn-helix motif, gene regulation; 1.54A {Bacillus caldolyticus} SCOP: a.35.1.3
Probab=33.80 E-value=41 Score=22.80 Aligned_cols=23 Identities=22% Similarity=0.183 Sum_probs=20.0
Q ss_pred HHHHHHHhCCChhhhhhHhhhhH
Q 022964 79 KIQLAKDLGLQPRQVAIWFQNRR 101 (289)
Q Consensus 79 r~~LA~~LgLs~rQVkvWFQNRR 101 (289)
..+||+.+|++...|..|...++
T Consensus 26 q~~lA~~~gis~~~i~~~e~g~~ 48 (77)
T 2b5a_A 26 QEELADLAGLHRTYISEVERGDR 48 (77)
T ss_dssp HHHHHHHHTCCHHHHHHHHTTCS
T ss_pred HHHHHHHHCCCHHHHHHHHCCCC
Confidence 46799999999999999998765
No 164
>1tty_A Sigma-A, RNA polymerase sigma factor RPOD; helix-turn-helix, transcription; NMR {Thermotoga maritima} SCOP: a.4.13.2
Probab=33.78 E-value=65 Score=23.16 Aligned_cols=50 Identities=6% Similarity=0.133 Sum_probs=34.7
Q ss_pred CCHHHHHHHHhhhhccCCCCHHHHHHHHHHhCCChhhhhhHhhhhHHHHHH
Q 022964 56 LTVDQVQFLEKSFEVENKLEPERKIQLAKDLGLQPRQVAIWFQNRRARWKT 106 (289)
Q Consensus 56 ~T~eQl~~LE~~F~~~~~P~~~~r~~LA~~LgLs~rQVkvWFQNRRak~Kr 106 (289)
++..+..+|...|-.... ....-.++|..+|++...|+.+...-+.+.|.
T Consensus 19 L~~~er~vl~l~~~l~~~-~~~s~~EIA~~lgis~~tV~~~~~ra~~kLr~ 68 (87)
T 1tty_A 19 LSPREAMVLRMRYGLLDG-KPKTLEEVGQYFNVTRERIRQIEVKALRKLRH 68 (87)
T ss_dssp SCHHHHHHHHHHHTTTTS-SCCCHHHHHHHHTCCHHHHHHHHHHHHHHHBT
T ss_pred CCHHHHHHHHHHHccCCC-CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 788888888887742100 11235678999999999999988655555543
No 165
>3qq6_A HTH-type transcriptional regulator SINR; helix-turn-helix motif, biofilm, repressor, SINI; 1.90A {Bacillus subtilis}
Probab=33.60 E-value=30 Score=24.37 Aligned_cols=21 Identities=19% Similarity=0.178 Sum_probs=17.0
Q ss_pred HHHHHHHhCCChhhhhhHhhh
Q 022964 79 KIQLAKDLGLQPRQVAIWFQN 99 (289)
Q Consensus 79 r~~LA~~LgLs~rQVkvWFQN 99 (289)
..+||..+|++...|..|-.+
T Consensus 26 q~elA~~~gis~~~is~~E~G 46 (78)
T 3qq6_A 26 LSELAEKAGVAKSYLSSIERN 46 (78)
T ss_dssp HHHHHHHHTCCHHHHHHHHTT
T ss_pred HHHHHHHHCcCHHHHHHHHcC
Confidence 356788888888888888877
No 166
>3bd1_A CRO protein; transcription factor, helix-turn-helix, prophage, structural evolution, transcription; 1.40A {Xylella fastidiosa}
Probab=32.61 E-value=26 Score=24.49 Aligned_cols=23 Identities=26% Similarity=0.469 Sum_probs=20.6
Q ss_pred HHHHHHHhCCChhhhhhHhhhhH
Q 022964 79 KIQLAKDLGLQPRQVAIWFQNRR 101 (289)
Q Consensus 79 r~~LA~~LgLs~rQVkvWFQNRR 101 (289)
..+||+.+|++...|..|..+++
T Consensus 14 q~~lA~~lgvs~~~is~~e~g~~ 36 (79)
T 3bd1_A 14 VSALAASLGVRQSAISNWRARGR 36 (79)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHTC
T ss_pred HHHHHHHHCCCHHHHHHHHHCCC
Confidence 56899999999999999998765
No 167
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=32.60 E-value=1.4e+02 Score=23.38 Aligned_cols=22 Identities=27% Similarity=0.282 Sum_probs=11.3
Q ss_pred hhhHHHhhHHHHHHHHHHHHHH
Q 022964 120 YNSLKADYDNLFKEKEKLKAEV 141 (289)
Q Consensus 120 ~~~lk~~~~~l~~ene~L~~e~ 141 (289)
...|-.+.+.|..||+.|+.|+
T Consensus 67 v~eLe~everL~~ENq~L~~e~ 88 (104)
T 3s9g_A 67 VRELELELDRLRAENLQLLTEN 88 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445555555555555554
No 168
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=32.45 E-value=1.6e+02 Score=23.26 Aligned_cols=52 Identities=19% Similarity=0.161 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhHHHhhHHHHHHHHHHHHHHHHHHHHHhhhh
Q 022964 101 RARWKTKQLEKDYDVLQNSYNSLKADYDNLFKEKEKLKAEVLKLTDKLQVKE 152 (289)
Q Consensus 101 Rak~Krk~~e~e~~~l~~~~~~lk~~~~~l~~ene~L~~e~~~l~~~l~~~~ 152 (289)
|-..++..++.....+..........+..|..++.+|..++..|+..+..-+
T Consensus 73 ~L~~~k~eLe~~l~el~~rleeeee~~~~L~~~kkkle~e~~~Lk~~led~e 124 (129)
T 2fxo_A 73 QLIKNKIQLEAKVKEMNKRLEDEEEMNAELTAKKRKLEDECSELKRDIDDLE 124 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445566777777777778888888899999999999999988876443
No 169
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=32.24 E-value=1.7e+02 Score=22.56 Aligned_cols=19 Identities=42% Similarity=0.433 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 022964 130 LFKEKEKLKAEVLKLTDKL 148 (289)
Q Consensus 130 l~~ene~L~~e~~~l~~~l 148 (289)
...++.++..|+..|+..|
T Consensus 45 aE~~~~~ie~ElEeLTasL 63 (97)
T 2eqb_B 45 AEEEADKLNKEVEDLTASL 63 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444433
No 170
>1rp3_A RNA polymerase sigma factor sigma-28 (FLIA); transcription; 2.30A {Aquifex aeolicus} SCOP: a.4.13.1 a.4.13.2 a.177.1.1 PDB: 1sc5_A
Probab=32.19 E-value=39 Score=27.87 Aligned_cols=46 Identities=17% Similarity=0.080 Sum_probs=32.9
Q ss_pred CCHHHHHHHHhhhhccCCCCHHHHHHHHHHhCCChhhhhhHhhhhHHHHHH
Q 022964 56 LTVDQVQFLEKSFEVENKLEPERKIQLAKDLGLQPRQVAIWFQNRRARWKT 106 (289)
Q Consensus 56 ~T~eQl~~LE~~F~~~~~P~~~~r~~LA~~LgLs~rQVkvWFQNRRak~Kr 106 (289)
++..+..+|...|-.. ....++|..||++...|+.+...-|.+.|+
T Consensus 188 L~~~~r~vl~l~~~~g-----~s~~EIA~~lgis~~~V~~~~~ra~~~Lr~ 233 (239)
T 1rp3_A 188 LPEREKLVIQLIFYEE-----LPAKEVAKILETSVSRVSQLKAKALERLRE 233 (239)
T ss_dssp SCHHHHHHHHHHHTSC-----CCHHHHHHHTTSCHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhcC-----CCHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Confidence 6777777777766332 235678999999999999988755555543
No 171
>1p9i_A Cortexillin I/GCN4 hybrid peptide; coiled-coil, unknown function; 1.17A {Synthetic} SCOP: h.1.10.1
Probab=32.15 E-value=75 Score=19.20 Aligned_cols=24 Identities=38% Similarity=0.360 Sum_probs=15.0
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHH
Q 022964 125 ADYDNLFKEKEKLKAEVLKLTDKL 148 (289)
Q Consensus 125 ~~~~~l~~ene~L~~e~~~l~~~l 148 (289)
+-..+|..||..|++.+.+|-.++
T Consensus 6 allasleaenkqlkakveellakv 29 (31)
T 1p9i_A 6 ALLASLEAENKQLKAKVEELLAKV 29 (31)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334456677777777776665443
No 172
>1zug_A Phage 434 CRO protein; gene regulating protein, transcription regulation; NMR {Phage 434} SCOP: a.35.1.2 PDB: 2cro_A 3cro_L*
Probab=31.85 E-value=25 Score=23.44 Aligned_cols=24 Identities=13% Similarity=0.243 Sum_probs=21.1
Q ss_pred HHHHHHHhCCChhhhhhHhhhhHH
Q 022964 79 KIQLAKDLGLQPRQVAIWFQNRRA 102 (289)
Q Consensus 79 r~~LA~~LgLs~rQVkvWFQNRRa 102 (289)
..+||+.+|++...|..|..+++.
T Consensus 19 q~~lA~~~gis~~~i~~~e~g~~~ 42 (71)
T 1zug_A 19 QTELATKAGVKQQSIQLIEAGVTK 42 (71)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTCCS
T ss_pred HHHHHHHhCCCHHHHHHHHcCCCC
Confidence 467999999999999999988765
No 173
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=31.84 E-value=1.6e+02 Score=23.71 Aligned_cols=19 Identities=37% Similarity=0.457 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHhhhh
Q 022964 134 KEKLKAEVLKLTDKLQVKE 152 (289)
Q Consensus 134 ne~L~~e~~~l~~~l~~~~ 152 (289)
.+.|+.|+..|+.+|+...
T Consensus 73 vqeLqgEI~~Lnq~Lq~a~ 91 (121)
T 3mq7_A 73 VEELEGEITTLNHKLQDAS 91 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 6666777777776666544
No 174
>3i5g_B Myosin regulatory light chain LC-2, mantle muscle; rigor-like, squid, muscle myosin, contractIle protein; 2.60A {Todarodes pacificus} PDB: 3i5f_B 3i5h_B 3i5i_B
Probab=31.68 E-value=67 Score=25.25 Aligned_cols=41 Identities=22% Similarity=0.347 Sum_probs=32.3
Q ss_pred CCCCcCCHHHHHHHHhhhhc-----cCCCCHHHHHHHHHHhCCChh
Q 022964 51 EKKRRLTVDQVQFLEKSFEV-----ENKLEPERKIQLAKDLGLQPR 91 (289)
Q Consensus 51 rkR~R~T~eQl~~LE~~F~~-----~~~P~~~~r~~LA~~LgLs~r 91 (289)
.++..+|.+|+..|...|.. +.+.+..+-..+.+.||..+.
T Consensus 5 ~~~~~Lt~~qi~elk~~F~~~D~d~dG~I~~~El~~~l~~lg~~~~ 50 (153)
T 3i5g_B 5 PRRVKLSQRQMQELKEAFTMIDQDRDGFIGMEDLKDMFSSLGRVPP 50 (153)
T ss_dssp --CTTCCHHHHHHHHHHHHHHCCSTTSCCCHHHHHHHHHHTTSCCC
T ss_pred ccccCCCHHHHHHHHHHHHHHCCCCCCeEcHHHHHHHHHHcCCCcc
Confidence 34567999999999999963 457899998888899987653
No 175
>3bs3_A Putative DNA-binding protein; XRE-family, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.65A {Bacteroides fragilis}
Probab=31.50 E-value=41 Score=22.71 Aligned_cols=24 Identities=21% Similarity=0.459 Sum_probs=20.1
Q ss_pred HHHHHHHhCCChhhhhhHhhhhHH
Q 022964 79 KIQLAKDLGLQPRQVAIWFQNRRA 102 (289)
Q Consensus 79 r~~LA~~LgLs~rQVkvWFQNRRa 102 (289)
..+||+.+|++...|..|..+++.
T Consensus 26 ~~~lA~~~gis~~~i~~~e~g~~~ 49 (76)
T 3bs3_A 26 NRWLAEQMGKSENTISRWCSNKSQ 49 (76)
T ss_dssp HHHHHHHHTCCHHHHHHHHTTSSC
T ss_pred HHHHHHHHCcCHHHHHHHHcCCCC
Confidence 467899999999999999987653
No 176
>3he5_B Synzip2; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=31.10 E-value=1.2e+02 Score=20.28 Aligned_cols=28 Identities=29% Similarity=0.409 Sum_probs=17.3
Q ss_pred hHHHhhHHHHHHHHHHHHHHHHHHHHHh
Q 022964 122 SLKADYDNLFKEKEKLKAEVLKLTDKLQ 149 (289)
Q Consensus 122 ~lk~~~~~l~~ene~L~~e~~~l~~~l~ 149 (289)
.|.++-..|.+-...|+.|+.+|...+.
T Consensus 21 qlerdeqnlekiianlrdeiarleneva 48 (52)
T 3he5_B 21 QLERDEQNLEKIIANLRDEIARLENEVA 48 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred hhhhhHhhHHHHHHHHHHHHHHHHHHHh
Confidence 3444445566666677777777766554
No 177
>1u78_A TC3 transposase, transposable element TC3 transposase; transposon DNA, bipartite DNA-binding, HTH- motif, DNA binding protein/DNA complex; 2.69A {Caenorhabditis elegans} SCOP: a.4.1.2 a.4.1.2
Probab=30.57 E-value=66 Score=24.37 Aligned_cols=41 Identities=5% Similarity=0.127 Sum_probs=30.8
Q ss_pred CcCCHHHHHHHHhhhhccCCCCHHHHHHHHHHhCCChhhhhhHhhh
Q 022964 54 RRLTVDQVQFLEKSFEVENKLEPERKIQLAKDLGLQPRQVAIWFQN 99 (289)
Q Consensus 54 ~R~T~eQl~~LE~~F~~~~~P~~~~r~~LA~~LgLs~rQVkvWFQN 99 (289)
+.++.++...+...+... . ...++|+.+|++...|..|+..
T Consensus 5 ~~~s~~~r~~i~~~~~~G-~----s~~~ia~~lgis~~Tv~r~~~~ 45 (141)
T 1u78_A 5 SALSDTERAQLDVMKLLN-V----SLHEMSRKISRSRHCIRVYLKD 45 (141)
T ss_dssp CCCCHHHHHHHHHHHHTT-C----CHHHHHHHHTCCHHHHHHHHHS
T ss_pred ccCCHHHHHHHHHHHHcC-C----CHHHHHHHHCcCHHHHHHHHHc
Confidence 457888777666666433 2 3567899999999999999964
No 178
>1no4_A Late, head morphogenesis protein; coiled-coil, viral protein; 2.20A {Bacillus phage PHI29} SCOP: h.1.24.1 PDB: 1noh_A
Probab=30.14 E-value=1.8e+02 Score=21.94 Aligned_cols=49 Identities=29% Similarity=0.428 Sum_probs=32.6
Q ss_pred HHHHHHHHHhhhhhhHHHhhHHHHHHHHHHHHHHHHHHHHHhhhhhhcc
Q 022964 108 QLEKDYDVLQNSYNSLKADYDNLFKEKEKLKAEVLKLTDKLQVKEKESK 156 (289)
Q Consensus 108 ~~e~e~~~l~~~~~~lk~~~~~l~~ene~L~~e~~~l~~~l~~~~~~~~ 156 (289)
+++.+|...-..|+.|....+.|.+||..|---+..|=.++...++...
T Consensus 30 qlr~~y~s~~se~~dlt~s~ekl~ae~~dlivsnsklfrqig~t~~~ee 78 (97)
T 1no4_A 30 QLRVNYGSFVSEYNDLTKSHEKLAAEKDDLIVSNSKLFRQIGLTEKQEE 78 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHhccCCeeeecHHHHHHhccchhhHH
Confidence 3455666667777777777777777777777777777666665554433
No 179
>3hh0_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, 11183J, structural genomics; 2.67A {Bacillus cereus atcc 14579}
Probab=29.90 E-value=2e+02 Score=22.96 Aligned_cols=73 Identities=19% Similarity=0.247 Sum_probs=42.0
Q ss_pred CCCcCCHHHHHHHHhhhhccCCCCHHHHHHHHHHhCCChhhhhhHhhhhHHHHHHHHHHHHHHHHhhhhhhHHHhhHHHH
Q 022964 52 KKRRLTVDQVQFLEKSFEVENKLEPERKIQLAKDLGLQPRQVAIWFQNRRARWKTKQLEKDYDVLQNSYNSLKADYDNLF 131 (289)
Q Consensus 52 kR~R~T~eQl~~LE~~F~~~~~P~~~~r~~LA~~LgLs~rQVkvWFQNRRak~Krk~~e~e~~~l~~~~~~lk~~~~~l~ 131 (289)
..+.|+..++..|.. ....+.+|++...|+..+.....-. .. ....|......|.
T Consensus 39 g~R~Y~~~dl~~l~~-------------I~~lr~~G~sl~~I~~~l~~~~~~~-----~~-------~~~~L~~q~~~L~ 93 (146)
T 3hh0_A 39 GHRLYTKDDLYVLQQ-------------IQSFKHLGFSLGEIQNIILQRDIET-----EV-------FLRQMHFQREVLL 93 (146)
T ss_dssp SCEEBCHHHHHHHHH-------------HHHHHHTTCCHHHHHHHHTSSEEEH-----HH-------HHHHHHHHHHHHH
T ss_pred CCEeeCHHHHHHHHH-------------HHHHHHcCCCHHHHHHHHHccCCCH-----HH-------HHHHHHHHHHHHH
Confidence 355699999998832 2335788999999998887542110 10 1112333344455
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 022964 132 KEKEKLKAEVLKLTDKLQ 149 (289)
Q Consensus 132 ~ene~L~~e~~~l~~~l~ 149 (289)
++.+.|+.-+..|...+.
T Consensus 94 ~~i~~l~~~l~~l~~~i~ 111 (146)
T 3hh0_A 94 AEQERIAKVLSHMDEMTK 111 (146)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 555555555555555443
No 180
>2jpc_A SSRB; DNA binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium}
Probab=29.85 E-value=41 Score=22.05 Aligned_cols=27 Identities=11% Similarity=0.116 Sum_probs=22.0
Q ss_pred HHHHHHhCCChhhhhhHhhhhHHHHHH
Q 022964 80 IQLAKDLGLQPRQVAIWFQNRRARWKT 106 (289)
Q Consensus 80 ~~LA~~LgLs~rQVkvWFQNRRak~Kr 106 (289)
.++|..||+++..|+.+..+-+.|.+.
T Consensus 17 ~eIA~~l~is~~tV~~~~~~~~~kl~~ 43 (61)
T 2jpc_A 17 HGISEKLHISIKTVETHRMNMMRKLQV 43 (61)
T ss_dssp HHHHHHTCSCHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHHHCC
Confidence 578999999999999988766655554
No 181
>2rnj_A Response regulator protein VRAR; HTH LUXR-type domain, DNA binding domain, activator, antibiotic resistance, cytoplasm, DNA-binding; NMR {Staphylococcus aureus}
Probab=29.71 E-value=73 Score=22.98 Aligned_cols=46 Identities=13% Similarity=0.072 Sum_probs=34.5
Q ss_pred cCCHHHHHHHHhhhhccCCCCHHHHHHHHHHhCCChhhhhhHhhhhHHHHHH
Q 022964 55 RLTVDQVQFLEKSFEVENKLEPERKIQLAKDLGLQPRQVAIWFQNRRARWKT 106 (289)
Q Consensus 55 R~T~eQl~~LE~~F~~~~~P~~~~r~~LA~~LgLs~rQVkvWFQNRRak~Kr 106 (289)
.++..+..+|...+.- + ...++|..||++...|+.+..+-+.|.+.
T Consensus 29 ~Lt~~e~~vl~l~~~g--~----s~~eIA~~l~is~~tV~~~l~r~~~kL~~ 74 (91)
T 2rnj_A 29 MLTEREMEILLLIAKG--Y----SNQEIASASHITIKTVKTHVSNILSKLEV 74 (91)
T ss_dssp GCCSHHHHHHHHHHTT--C----CTTHHHHHHTCCHHHHHHHHHHHHHHTTC
T ss_pred cCCHHHHHHHHHHHcC--C----CHHHHHHHHCcCHHHHHHHHHHHHHHHCC
Confidence 4899999988875432 2 23578999999999999998766666554
No 182
>3t76_A VANU, transcriptional regulator vanug; structural genomics, center for structural genomics of infec diseases, csgid; HET: MSE; 1.12A {Enterococcus faecalis} PDB: 3t75_A* 3tyr_A* 3tys_A*
Probab=29.58 E-value=43 Score=24.70 Aligned_cols=37 Identities=19% Similarity=0.138 Sum_probs=25.6
Q ss_pred HHHHHHHhCCChhhhhhHhhhhHHHHHHHHHHHHHHHHh
Q 022964 79 KIQLAKDLGLQPRQVAIWFQNRRARWKTKQLEKDYDVLQ 117 (289)
Q Consensus 79 r~~LA~~LgLs~rQVkvWFQNRRak~Krk~~e~e~~~l~ 117 (289)
..+||+.+|++...|..|..+++. ....+.+-...|.
T Consensus 40 q~eLA~~~GiS~~tis~iE~G~~~--s~~~l~kIa~~L~ 76 (88)
T 3t76_A 40 KGELREAVGVSKSTFAKLGKNENV--SLTVLLAICEYLN 76 (88)
T ss_dssp HHHHHHHHTCCHHHHHHHHTTCCC--CHHHHHHHHHHHT
T ss_pred HHHHHHHHCcCHHHHHHHHcCCCc--CHHHHHHHHHHHC
Confidence 567899999999999999988652 3333444444433
No 183
>1or7_A Sigma-24, RNA polymerase sigma-E factor; regulation, DNA-binding, transmembrane, transcription; 2.00A {Escherichia coli} SCOP: a.4.13.2 a.177.1.1 PDB: 2h27_A
Probab=29.57 E-value=75 Score=25.32 Aligned_cols=46 Identities=11% Similarity=-0.112 Sum_probs=32.4
Q ss_pred CCHHHHHHHHhhhhccCCCCHHHHHHHHHHhCCChhhhhhHhhhhHHHHHH
Q 022964 56 LTVDQVQFLEKSFEVENKLEPERKIQLAKDLGLQPRQVAIWFQNRRARWKT 106 (289)
Q Consensus 56 ~T~eQl~~LE~~F~~~~~P~~~~r~~LA~~LgLs~rQVkvWFQNRRak~Kr 106 (289)
++..+..+|...|-.. ..-.++|..||++...|+.+...-|.+.|+
T Consensus 141 L~~~~r~vl~l~~~~g-----~s~~EIA~~lgis~~tV~~~l~ra~~~Lr~ 186 (194)
T 1or7_A 141 LPEDLRMAITLRELDG-----LSYEEIAAIMDCPVGTVRSRIFRAREAIDN 186 (194)
T ss_dssp SCHHHHHHHHHHHTTC-----CCHHHHHHHTTSCHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHhHHHHHcC-----CCHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 6777777776655332 134688999999999999998765555543
No 184
>3omt_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 1.65A {Cytophaga hutchinsonii}
Probab=29.54 E-value=45 Score=22.62 Aligned_cols=23 Identities=22% Similarity=0.377 Sum_probs=19.0
Q ss_pred HHHHHHHhCCChhhhhhHhhhhH
Q 022964 79 KIQLAKDLGLQPRQVAIWFQNRR 101 (289)
Q Consensus 79 r~~LA~~LgLs~rQVkvWFQNRR 101 (289)
..+||+.+|++...|..|..+++
T Consensus 24 q~~lA~~~gis~~~is~~e~g~~ 46 (73)
T 3omt_A 24 NLWLTETLDKNKTTVSKWCTNDV 46 (73)
T ss_dssp HHHHHHHTTCCHHHHHHHHTTSS
T ss_pred HHHHHHHHCcCHHHHHHHHcCCC
Confidence 45789999999999999987763
No 185
>1a93_B MAX protein, coiled coil, LZ; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Mus musculus} SCOP: h.1.3.1 PDB: 2a93_B
Probab=29.51 E-value=89 Score=19.79 Aligned_cols=22 Identities=18% Similarity=0.237 Sum_probs=10.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHH
Q 022964 127 YDNLFKEKEKLKAEVLKLTDKL 148 (289)
Q Consensus 127 ~~~l~~ene~L~~e~~~l~~~l 148 (289)
+.+.+++.+.|+.++..|..++
T Consensus 9 n~a~qqDIddlkrQN~~Le~Qi 30 (34)
T 1a93_B 9 NDTHQQDIDDLKRQNALLEQQV 30 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHhhHhhHHHHHHHHHHHHHHH
Confidence 3444445555555555554443
No 186
>1t6f_A Geminin; coiled-coil, cell cycle; 1.47A {Synthetic} SCOP: h.1.28.1
Probab=29.50 E-value=75 Score=20.37 Aligned_cols=24 Identities=25% Similarity=0.279 Sum_probs=10.8
Q ss_pred hHHHhhHHHHHHHHHHHHHHHHHH
Q 022964 122 SLKADYDNLFKEKEKLKAEVLKLT 145 (289)
Q Consensus 122 ~lk~~~~~l~~ene~L~~e~~~l~ 145 (289)
.|+.+...-..|..+|+.++.+|+
T Consensus 11 kLhk~ie~KdeeIa~Lk~eN~eL~ 34 (37)
T 1t6f_A 11 KLHKEIEQKDNEIARLKKENKELA 34 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHH
Confidence 334444444444445555554443
No 187
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=29.18 E-value=1.5e+02 Score=27.84 Aligned_cols=28 Identities=18% Similarity=0.057 Sum_probs=13.6
Q ss_pred hHHHhhHHHHHHHHHHHHHHHHHHHHHh
Q 022964 122 SLKADYDNLFKEKEKLKAEVLKLTDKLQ 149 (289)
Q Consensus 122 ~lk~~~~~l~~ene~L~~e~~~l~~~l~ 149 (289)
....+...+++|+++++.++..+..++.
T Consensus 439 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 466 (487)
T 3oja_A 439 MYQHKETQLAEENARLKKLNGEADLALA 466 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHhhhhhhhhhhhhhhhH
Confidence 3344444455555555555555544444
No 188
>1adr_A P22 C2 repressor; transcription regulation; NMR {Enterobacteria phage P22} SCOP: a.35.1.2
Probab=29.15 E-value=41 Score=22.63 Aligned_cols=24 Identities=17% Similarity=0.386 Sum_probs=20.2
Q ss_pred HHHHHHHhCCChhhhhhHhhhhHH
Q 022964 79 KIQLAKDLGLQPRQVAIWFQNRRA 102 (289)
Q Consensus 79 r~~LA~~LgLs~rQVkvWFQNRRa 102 (289)
..+||+.+|++...|..|...++.
T Consensus 21 ~~~lA~~~gis~~~i~~~e~g~~~ 44 (76)
T 1adr_A 21 QAALGKMVGVSNVAISQWERSETE 44 (76)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTSSC
T ss_pred HHHHHHHHCcCHHHHHHHHcCCCC
Confidence 467999999999999999887543
No 189
>3ulq_B Transcriptional regulatory protein COMA; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} PDB: 2krf_A
Probab=29.14 E-value=1e+02 Score=22.64 Aligned_cols=46 Identities=15% Similarity=0.147 Sum_probs=33.5
Q ss_pred CCcCCHHHHHHHHhhhhccCCCCHHHHHHHHHHhCCChhhhhhHhhhhHHHH
Q 022964 53 KRRLTVDQVQFLEKSFEVENKLEPERKIQLAKDLGLQPRQVAIWFQNRRARW 104 (289)
Q Consensus 53 R~R~T~eQl~~LE~~F~~~~~P~~~~r~~LA~~LgLs~rQVkvWFQNRRak~ 104 (289)
...||..+..+|...++ .+ ...++|..||++.+.|+....+=+.|.
T Consensus 27 ~~~Lt~rE~~Vl~l~~~--G~----s~~eIA~~L~iS~~TV~~~~~~i~~Kl 72 (90)
T 3ulq_B 27 QDVLTPRECLILQEVEK--GF----TNQEIADALHLSKRSIEYSLTSIFNKL 72 (90)
T ss_dssp --CCCHHHHHHHHHHHT--TC----CHHHHHHHHTCCHHHHHHHHHHHHHHT
T ss_pred ccCCCHHHHHHHHHHHc--CC----CHHHHHHHHCcCHHHHHHHHHHHHHHH
Confidence 44599999999987762 22 367899999999999998876544443
No 190
>2lv7_A Calcium-binding protein 7; metal binding protein; NMR {Homo sapiens}
Probab=28.93 E-value=1.7e+02 Score=21.43 Aligned_cols=47 Identities=13% Similarity=0.274 Sum_probs=36.9
Q ss_pred CCCcCCHHHHHHHHhhhhc-----cCCCCHHHHHHHHHHhCC--ChhhhhhHhh
Q 022964 52 KKRRLTVDQVQFLEKSFEV-----ENKLEPERKIQLAKDLGL--QPRQVAIWFQ 98 (289)
Q Consensus 52 kR~R~T~eQl~~LE~~F~~-----~~~P~~~~r~~LA~~LgL--s~rQVkvWFQ 98 (289)
+...++.+++..|...|.. +.+.+..+-..+.+.+|. +..+|+.+|+
T Consensus 26 ~~~~l~~~~~~el~~~F~~~D~d~~G~I~~~El~~~l~~lg~~~~~~ei~~l~~ 79 (100)
T 2lv7_A 26 RPVDIPEDELEEIREAFKVFDRDGNGFISKQELGTAMRSLGYMPNEVELEVIIQ 79 (100)
T ss_dssp SCCCCCGGGHHHHHHHHHHTCSSCSSCBCHHHHHHHHHHHTCCCCTTTHHHHHH
T ss_pred ccccCCHHHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHhCCCCCHHHHHHHHH
Confidence 3445899999999999863 458999999998898884 6677777774
No 191
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=28.20 E-value=72 Score=28.79 Aligned_cols=42 Identities=19% Similarity=0.333 Sum_probs=35.2
Q ss_pred HHHHHHHhhhhhhHHHhhHHHHHHHHHHHHHHHHHHHHHhhh
Q 022964 110 EKDYDVLQNSYNSLKADYDNLFKEKEKLKAEVLKLTDKLQVK 151 (289)
Q Consensus 110 e~e~~~l~~~~~~lk~~~~~l~~ene~L~~e~~~l~~~l~~~ 151 (289)
+..+..++..+..|...+..|..+...++.|+.+|++.+..-
T Consensus 53 ~~~l~eL~~ql~~L~arNe~L~~~Lk~ar~El~~LkeElerL 94 (251)
T 3m9b_A 53 ARDIHQLEARIDSLAARNSKLMETLKEARQQLLALREEVDRL 94 (251)
T ss_dssp CHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 445667888889999999999999999999999999888643
No 192
>1r69_A Repressor protein CI; gene regulating protein; 2.00A {Phage 434} SCOP: a.35.1.2 PDB: 1pra_A 1per_L 1rpe_L* 2or1_L* 1r63_A 2r63_A 1sq8_A
Probab=27.96 E-value=33 Score=22.69 Aligned_cols=24 Identities=13% Similarity=0.268 Sum_probs=20.9
Q ss_pred HHHHHHHhCCChhhhhhHhhhhHH
Q 022964 79 KIQLAKDLGLQPRQVAIWFQNRRA 102 (289)
Q Consensus 79 r~~LA~~LgLs~rQVkvWFQNRRa 102 (289)
..+||+.+|++...|..|..+++.
T Consensus 17 q~~lA~~~gis~~~i~~~e~g~~~ 40 (69)
T 1r69_A 17 QAELAQKVGTTQQSIEQLENGKTK 40 (69)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTSCS
T ss_pred HHHHHHHHCcCHHHHHHHHcCCCC
Confidence 467999999999999999987665
No 193
>3g7r_A Putative transcriptional regulator; TETR, all-helical, structural genomics, PSI-2, protein structure initiative; 1.38A {Streptomyces coelicolor A3}
Probab=27.91 E-value=1.3e+02 Score=24.16 Aligned_cols=40 Identities=8% Similarity=0.039 Sum_probs=29.0
Q ss_pred HhhhhccCCCCHHHHHHHHHHhCCChhhhhhHhhhhHHHHH
Q 022964 65 EKSFEVENKLEPERKIQLAKDLGLQPRQVAIWFQNRRARWK 105 (289)
Q Consensus 65 E~~F~~~~~P~~~~r~~LA~~LgLs~rQVkvWFQNRRak~K 105 (289)
...|....| .......||+..|++..-|-..|.||-.-..
T Consensus 45 ~~lf~~~G~-~~~t~~~IA~~AGvs~~tlY~~F~sKe~L~~ 84 (221)
T 3g7r_A 45 TRIFYAEGI-HSVGIDRITAEAQVTRATLYRHFSGKDDLIL 84 (221)
T ss_dssp HHHHHHHCS-TTSCHHHHHHHHTCCHHHHHHHCSSHHHHHH
T ss_pred HHHHHHhCc-ccCCHHHHHHHhCCCHHHHHHHCCCHHHHHH
Confidence 344655543 3445678899999999999999998755443
No 194
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein ISL-1; protein-protein complex, LIM domain, Zn finger, activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A
Probab=27.89 E-value=3.3 Score=34.28 Aligned_cols=29 Identities=0% Similarity=-0.104 Sum_probs=20.9
Q ss_pred CCCCCCCcCCHHHHHHHHhhhhccCCCCH
Q 022964 48 HQPEKKRRLTVDQVQFLEKSFEVENKLEP 76 (289)
Q Consensus 48 ~~~rkR~R~T~eQl~~LE~~F~~~~~P~~ 76 (289)
..+|.|+.|+..|++.|+..|+.+++|..
T Consensus 135 ~~~rprt~~~~~q~~~l~~~f~~~~~~~~ 163 (169)
T 2rgt_A 135 GGSGGGTPMVAASPERHDGGLQANPVEVQ 163 (169)
T ss_dssp ------EEEECCCCEECCSSCCCCCCCCC
T ss_pred CCcCCCCcccHHHHHHHHHHHhCCCCccc
Confidence 34555667999999999999999999864
No 195
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=27.83 E-value=1.5e+02 Score=22.42 Aligned_cols=30 Identities=20% Similarity=0.218 Sum_probs=19.0
Q ss_pred hhhhHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 022964 119 SYNSLKADYDNLFKEKEKLKAEVLKLTDKL 148 (289)
Q Consensus 119 ~~~~lk~~~~~l~~ene~L~~e~~~l~~~l 148 (289)
.+..|+.....|..|+..|+.++..|++-.
T Consensus 47 EN~~Lh~~ie~l~eEi~~lk~en~eL~ela 76 (83)
T 1uii_A 47 ENEKLHKEIEQKDNEIARLKKENKELAEVA 76 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566666666777777777776666543
No 196
>2k27_A Paired box protein PAX-8; paired domain, solution structure, triple frequency, 3D NMR, induced FIT, alternative splicing, developmental protein; NMR {Homo sapiens}
Probab=27.34 E-value=1.6e+02 Score=23.14 Aligned_cols=62 Identities=13% Similarity=0.066 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCCccCCCCCCCCcCCHHHHHHHHhhhhccCCCCHHHHHHHHHHhCCChhhhhhHhh
Q 022964 32 PFDRDENGDEDFDEYFHQPEKKRRLTVDQVQFLEKSFEVENKLEPERKIQLAKDLGLQPRQVAIWFQ 98 (289)
Q Consensus 32 ~~~~~e~~~e~~~~~~~~~rkR~R~T~eQl~~LE~~F~~~~~P~~~~r~~LA~~LgLs~rQVkvWFQ 98 (289)
+-.+--.|.......+......+.++.++...+-..+.... ...++|+.+|++...|..|++
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~~~~~~s~e~r~~ii~l~~~G~-----s~~~IA~~lgis~~TV~rwl~ 63 (159)
T 2k27_A 2 PHNSIRSGHGGLNQLGGAFVNGRPLPEVVRQRIVDLAHQGV-----RPCDISRQLRVSHGCVSKILG 63 (159)
T ss_dssp CCSCCCCSCSSCCCCCCTTSSSCSSCHHHHHHHHHHHHHTC-----CHHHHHHHHTCCSHHHHHHHC
T ss_pred CcchhhhcchhhhhcCCcCCCCCCCCHHHHHHHHHHHHcCC-----CHHHHHHHHCcCHHHHHHHHH
No 197
>2r2v_A GCN4 leucine zipper; coiled coils, anti-parallel tetramer, protein design, de novo protein; HET: CIT; 1.90A {Saccharomyces cerevisiae} SCOP: h.1.3.1
Probab=27.13 E-value=1.1e+02 Score=19.29 Aligned_cols=24 Identities=8% Similarity=0.109 Sum_probs=19.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHh
Q 022964 126 DYDNLFKEKEKLKAEVLKLTDKLQ 149 (289)
Q Consensus 126 ~~~~l~~ene~L~~e~~~l~~~l~ 149 (289)
..+.|..+|..|..|+.+|++-|.
T Consensus 9 KvEel~~~~~~l~nEv~Rl~~lLg 32 (34)
T 2r2v_A 9 KLEEVASKLYHNANELARVAKLLG 32 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHHHhc
Confidence 345678889999999999987664
No 198
>2vz4_A Tipal, HTH-type transcriptional activator TIPA; transcription, resistance, antibiotic; 2.90A {Streptomyces lividans}
Probab=27.05 E-value=2e+02 Score=21.53 Aligned_cols=34 Identities=24% Similarity=0.436 Sum_probs=26.0
Q ss_pred CCcCCHHHHHHHHhhhhccCCCCHHHHHHHHHHhCCChhhhhhHhhh
Q 022964 53 KRRLTVDQVQFLEKSFEVENKLEPERKIQLAKDLGLQPRQVAIWFQN 99 (289)
Q Consensus 53 R~R~T~eQl~~LE~~F~~~~~P~~~~r~~LA~~LgLs~rQVkvWFQN 99 (289)
.+.|+.+++..|.. ....+.+|++...|+.++..
T Consensus 37 ~R~Y~~~dl~~l~~-------------I~~lr~~G~sl~~I~~~l~~ 70 (108)
T 2vz4_A 37 HRRYSDADLDRLQQ-------------ILFYRELGFPLDEVAALLDD 70 (108)
T ss_dssp CEEBCHHHHHHHHH-------------HHHHHHTTCCHHHHHHHHTC
T ss_pred CeecCHHHHHHHHH-------------HHHHHHCCCCHHHHHHHHhC
Confidence 45699999988832 22347899999999999865
No 199
>2kpj_A SOS-response transcriptional repressor, LEXA; NESG, GFT, structural genomics, PSI-2, protein structure initiative; NMR {Eubacterium rectale atcc 33656}
Probab=26.89 E-value=47 Score=23.91 Aligned_cols=23 Identities=22% Similarity=0.680 Sum_probs=19.8
Q ss_pred HHHHHHHhCCChhhhhhHhhhhH
Q 022964 79 KIQLAKDLGLQPRQVAIWFQNRR 101 (289)
Q Consensus 79 r~~LA~~LgLs~rQVkvWFQNRR 101 (289)
..+||+.+|++...|..|..+++
T Consensus 25 q~~lA~~~gis~~~is~~e~G~~ 47 (94)
T 2kpj_A 25 QLEIAKSIGVSPQTFNTWCKGIA 47 (94)
T ss_dssp HHHHHHHHTCCHHHHHHHHTTSC
T ss_pred HHHHHHHHCcCHHHHHHHHhCCC
Confidence 46799999999999999987654
No 200
>1y7y_A C.AHDI; helix-turn-helix, DNA-binding protein, transcriptional regulator, transcription regulator; 1.69A {Aeromonas hydrophila} SCOP: a.35.1.3
Probab=26.23 E-value=37 Score=22.76 Aligned_cols=23 Identities=26% Similarity=0.082 Sum_probs=20.0
Q ss_pred HHHHHHHhCCChhhhhhHhhhhH
Q 022964 79 KIQLAKDLGLQPRQVAIWFQNRR 101 (289)
Q Consensus 79 r~~LA~~LgLs~rQVkvWFQNRR 101 (289)
..+||+.+|++...|..|..+++
T Consensus 29 ~~~lA~~~gis~~~i~~~e~g~~ 51 (74)
T 1y7y_A 29 QETLAFLSGLDRSYVGGVERGQR 51 (74)
T ss_dssp HHHHHHHHTCCHHHHHHHHTTCS
T ss_pred HHHHHHHHCcCHHHHHHHHCCCC
Confidence 46799999999999999998764
No 201
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=26.10 E-value=99 Score=23.06 Aligned_cols=28 Identities=29% Similarity=0.440 Sum_probs=16.7
Q ss_pred hHHHhhHHHHHHHHHHHHHHHHHHHHHh
Q 022964 122 SLKADYDNLFKEKEKLKAEVLKLTDKLQ 149 (289)
Q Consensus 122 ~lk~~~~~l~~ene~L~~e~~~l~~~l~ 149 (289)
.|......+..+++.|+.++..|+.+|.
T Consensus 56 ~L~~~~~~l~~~~~~L~~~n~~L~~rl~ 83 (88)
T 1nkp_A 56 SVQAEEQKLISEEDLLRKRREQLKHKLE 83 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555566666666666666666554
No 202
>3oa7_A Head morphogenesis protein, chaotic nuclear migra protein 67 fusion protein; coiled coils, structural protein, spindle POLE BODY; 2.30A {Bacillus phage PHI29}
Probab=25.92 E-value=97 Score=27.08 Aligned_cols=39 Identities=28% Similarity=0.437 Sum_probs=26.7
Q ss_pred HHHHHHHHHhhhhhhHHHhhHHHHHHHHHHHHHHHHHHH
Q 022964 108 QLEKDYDVLQNSYNSLKADYDNLFKEKEKLKAEVLKLTD 146 (289)
Q Consensus 108 ~~e~e~~~l~~~~~~lk~~~~~l~~ene~L~~e~~~l~~ 146 (289)
+++.++.+.-..|+.|......+..|+..|+.-+..|++
T Consensus 34 ~~~a~~~s~~s~~~dl~~s~~~l~ae~~~L~~~l~kLeG 72 (206)
T 3oa7_A 34 QLRVNYGSFVSEYNDLTKSHNTLSKELDNLRSRFGNLEG 72 (206)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHccC
Confidence 445666666666777777777777777777777766654
No 203
>2j5u_A MREC protein; bacterial cell shape determining protein MREC, cell shape regulation; 2.5A {Listeria monocytogenes}
Probab=25.70 E-value=45 Score=29.65 Aligned_cols=42 Identities=24% Similarity=0.296 Sum_probs=0.0
Q ss_pred HHHHHHhhhhhhHHHhhHHHH---HHHHHHHHHHHHHHHHHhhhh
Q 022964 111 KDYDVLQNSYNSLKADYDNLF---KEKEKLKAEVLKLTDKLQVKE 152 (289)
Q Consensus 111 ~e~~~l~~~~~~lk~~~~~l~---~ene~L~~e~~~l~~~l~~~~ 152 (289)
..+..+...+..|+.++..|. .+.+.|+.|+.+|++.|....
T Consensus 19 ~~~~~l~~eN~~Lk~e~~~l~~~~~~~~~l~~En~rLr~lL~~~~ 63 (255)
T 2j5u_A 19 VDLKNTYTENQHLKERLEELAQLESEVADLKKENKDLKESLDITD 63 (255)
T ss_dssp -------CTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcc
No 204
>2x48_A CAG38821; archeal virus, viral protein; 2.60A {Sulfolobus islandicus rod-shaped virusorganism_taxid}
Probab=25.61 E-value=44 Score=21.61 Aligned_cols=36 Identities=22% Similarity=0.288 Sum_probs=25.0
Q ss_pred HHHHHHHHhhhhccCCCCHHHHHHHHHHhCCChhhhhhHhh
Q 022964 58 VDQVQFLEKSFEVENKLEPERKIQLAKDLGLQPRQVAIWFQ 98 (289)
Q Consensus 58 ~eQl~~LE~~F~~~~~P~~~~r~~LA~~LgLs~rQVkvWFQ 98 (289)
.++...+...+... . ...++|+.+|++...|..|..
T Consensus 18 ~~~~~~i~~l~~~g-~----s~~eIA~~lgis~~TV~~~l~ 53 (55)
T 2x48_A 18 DDLVSVAHELAKMG-Y----TVQQIANALGVSERKVRRYLE 53 (55)
T ss_dssp HHHHHHHHHHHHTT-C----CHHHHHHHHTSCHHHHHHHHT
T ss_pred HHHHHHHHHHHHcC-C----CHHHHHHHHCcCHHHHHHHHH
Confidence 55555555444322 2 356789999999999999974
No 205
>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B
Probab=25.40 E-value=1.2e+02 Score=18.52 Aligned_cols=24 Identities=38% Similarity=0.398 Sum_probs=12.9
Q ss_pred hHHHhhHHHHHHHHHHHHHHHHHH
Q 022964 122 SLKADYDNLFKEKEKLKAEVLKLT 145 (289)
Q Consensus 122 ~lk~~~~~l~~ene~L~~e~~~l~ 145 (289)
.|+.+...|++|...|+-|+..|+
T Consensus 6 alkqeiaalkkeiaalkfeiaalk 29 (33)
T 4dzn_A 6 ALKQEIAALKKEIAALKFEIAALK 29 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555555555554
No 206
>3v86_A De novo design helix; computational design of A protein crystal, helical coil, DE designed helix, de novo protein; 2.91A {Synthetic}
Probab=25.37 E-value=70 Score=18.77 Aligned_cols=17 Identities=35% Similarity=0.313 Sum_probs=7.1
Q ss_pred hhHHHHHHHHHHHHHHH
Q 022964 126 DYDNLFKEKEKLKAEVL 142 (289)
Q Consensus 126 ~~~~l~~ene~L~~e~~ 142 (289)
+...|+-|...|+.|+.
T Consensus 8 evgelkgevralkdevk 24 (27)
T 3v86_A 8 EVGELKGEVRALKDEVK 24 (27)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhHHHHHHHHHh
Confidence 33334444444444443
No 207
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=25.34 E-value=1.9e+02 Score=20.78 Aligned_cols=45 Identities=11% Similarity=0.108 Sum_probs=32.3
Q ss_pred CCcCCHHHHHHHHhhhhccCCCCHHHHHHHHHHh-CCChhhhhhHh
Q 022964 53 KRRLTVDQVQFLEKSFEVENKLEPERKIQLAKDL-GLQPRQVAIWF 97 (289)
Q Consensus 53 R~R~T~eQl~~LE~~F~~~~~P~~~~r~~LA~~L-gLs~rQVkvWF 97 (289)
+..+|.++-..|+........-.+..=..||..+ |=+..||+.=|
T Consensus 18 ~~~WT~eEd~~L~~al~~~g~~~~~rW~~IA~~vpGRT~~qcr~Ry 63 (73)
T 2cqr_A 18 EEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVPSKSKEDCIARY 63 (73)
T ss_dssp SCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGGGCSSSCHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCCCCHHHHHHHH
Confidence 4459999999999888775544556667788888 56667766443
No 208
>1fi6_A EH domain protein REPS1; EPS15 homology domain, EF hand, calcium, RAS signal transduction, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: a.39.1.6
Probab=24.98 E-value=81 Score=22.54 Aligned_cols=43 Identities=12% Similarity=0.160 Sum_probs=33.2
Q ss_pred CCHHHHHHHHhhhhc-----cCCCCHHHHHHHHHHhCCChhhhhhHhh
Q 022964 56 LTVDQVQFLEKSFEV-----ENKLEPERKIQLAKDLGLQPRQVAIWFQ 98 (289)
Q Consensus 56 ~T~eQl~~LE~~F~~-----~~~P~~~~r~~LA~~LgLs~rQVkvWFQ 98 (289)
++.+++..+...|.. +.+.+..+-..+...+|++...++.+|.
T Consensus 3 ls~~~~~~~~~~F~~~D~d~dG~I~~~el~~~l~~~g~~~~~~~~i~~ 50 (92)
T 1fi6_A 3 ITDEQRQYYVNQFKTIQPDLNGFIPGSAAKEFFTKSKLPILELSHIWE 50 (92)
T ss_dssp CCHHHHHHHHHHHTTTCCSTTCEEEHHHHHHHHHHHSSCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHcCCCHHHHHHHHH
Confidence 578888899988864 3467888888888888998877776653
No 209
>3twe_A Alpha4H; unknown function; HET: PGE; 1.36A {Synthetic} PDB: 3twf_A* 4g4m_A*
Probab=24.81 E-value=1e+02 Score=18.10 Aligned_cols=22 Identities=45% Similarity=0.685 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q 022964 128 DNLFKEKEKLKAEVLKLTDKLQ 149 (289)
Q Consensus 128 ~~l~~ene~L~~e~~~l~~~l~ 149 (289)
+.|.+|.+.|+..+..|+.+|.
T Consensus 4 delykeledlqerlrklrkklr 25 (27)
T 3twe_A 4 DELYKELEDLQERLRKLRKKLR 25 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhc
Confidence 3456677777777777777664
No 210
>2wiu_B HTH-type transcriptional regulator HIPB; transferase transcription complex, serine kinase, DNA-bindin mercury derivative, repressor; 2.35A {Escherichia coli} PDB: 3dnv_B* 3dnw_B* 3hzi_B*
Probab=24.60 E-value=51 Score=22.96 Aligned_cols=23 Identities=22% Similarity=0.419 Sum_probs=19.8
Q ss_pred HHHHHHHhCCChhhhhhHhhhhH
Q 022964 79 KIQLAKDLGLQPRQVAIWFQNRR 101 (289)
Q Consensus 79 r~~LA~~LgLs~rQVkvWFQNRR 101 (289)
..+||+.+|++...|..|..+++
T Consensus 28 q~~lA~~~gis~~~i~~~e~g~~ 50 (88)
T 2wiu_B 28 QSELAKKIGIKQATISNFENNPD 50 (88)
T ss_dssp HHHHHHHHTCCHHHHHHHHHCGG
T ss_pred HHHHHHHhCCCHHHHHHHHcCCC
Confidence 46799999999999999997744
No 211
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=24.18 E-value=3.1e+02 Score=22.81 Aligned_cols=43 Identities=21% Similarity=0.176 Sum_probs=31.7
Q ss_pred HHHHHHhhhhhhHHHhhHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 022964 111 KDYDVLQNSYNSLKADYDNLFKEKEKLKAEVLKLTDKLQVKEK 153 (289)
Q Consensus 111 ~e~~~l~~~~~~lk~~~~~l~~ene~L~~e~~~l~~~l~~~~~ 153 (289)
+..+.++..+..|..++..+.....+|++|+..|-+....+..
T Consensus 96 K~~e~l~DEl~aLqlq~n~lE~kl~kLq~EN~~LV~RWM~rk~ 138 (152)
T 3a7p_A 96 KNTERLNAALISGTIENNVLQQKLSDLKKEHSQLVARWLKKTE 138 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455677777778888888888888888888888777765443
No 212
>3kz3_A Repressor protein CI; five helix bundle, DNA-binding, transcription, transcription regulation; 1.64A {Enterobacteria phage lambda}
Probab=23.86 E-value=41 Score=23.42 Aligned_cols=24 Identities=25% Similarity=0.333 Sum_probs=20.6
Q ss_pred HHHHHHHhCCChhhhhhHhhhhHH
Q 022964 79 KIQLAKDLGLQPRQVAIWFQNRRA 102 (289)
Q Consensus 79 r~~LA~~LgLs~rQVkvWFQNRRa 102 (289)
..+||..+|++...|..|..+++.
T Consensus 28 q~~lA~~~gvs~~~is~~e~g~~~ 51 (80)
T 3kz3_A 28 YESVADKMGMGQSAVAALFNGINA 51 (80)
T ss_dssp HHHHHHHTTSCHHHHHHHHTTSSC
T ss_pred HHHHHHHhCcCHHHHHHHHcCCCC
Confidence 457999999999999999987654
No 213
>2k9q_A Uncharacterized protein; all helix, helix-turn-helix, plasmid, structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides thetaiotaomicron}
Probab=23.71 E-value=64 Score=22.11 Aligned_cols=23 Identities=17% Similarity=0.278 Sum_probs=19.4
Q ss_pred HHHHHHHhCCChhhhhhHhhhhH
Q 022964 79 KIQLAKDLGLQPRQVAIWFQNRR 101 (289)
Q Consensus 79 r~~LA~~LgLs~rQVkvWFQNRR 101 (289)
..+||+.+|++...|..|-.+++
T Consensus 18 q~~lA~~~gis~~~i~~~e~g~~ 40 (77)
T 2k9q_A 18 AKSVAEEMGISRQQLCNIEQSET 40 (77)
T ss_dssp HHHHHHHHTSCHHHHHHHHTCCS
T ss_pred HHHHHHHhCCCHHHHHHHHcCCC
Confidence 45799999999999999987754
No 214
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=23.60 E-value=1.3e+02 Score=22.34 Aligned_cols=32 Identities=28% Similarity=0.266 Sum_probs=22.8
Q ss_pred HHHhhhhhhHHHhhHHHHHHHHHHHHHHHHHH
Q 022964 114 DVLQNSYNSLKADYDNLFKEKEKLKAEVLKLT 145 (289)
Q Consensus 114 ~~l~~~~~~lk~~~~~l~~ene~L~~e~~~l~ 145 (289)
..|+.....+..+.+.|..+++.|+.++..|+
T Consensus 55 ~~L~~~~~~l~~~~~~L~~~n~~L~~rl~~L~ 86 (88)
T 1nkp_A 55 LSVQAEEQKLISEEDLLRKRREQLKHKLEQLG 86 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 44555555666677778888888888887775
No 215
>2wuj_A Septum site-determining protein diviva; bacterial cell division, septation, cell cycle, sporulation; 1.40A {Bacillus subtilis} PDB: 2wuk_A
Probab=23.42 E-value=39 Score=23.38 Aligned_cols=36 Identities=8% Similarity=0.153 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHhhhhhhHHHhhHHHHHHHHHHHHH
Q 022964 105 KTKQLEKDYDVLQNSYNSLKADYDNLFKEKEKLKAE 140 (289)
Q Consensus 105 Krk~~e~e~~~l~~~~~~lk~~~~~l~~ene~L~~e 140 (289)
....-......+...+..|..++..|..+++.|+.+
T Consensus 21 ~~~EVD~FLd~v~~~~~~l~~e~~~L~~~~~~l~~~ 56 (57)
T 2wuj_A 21 DEDEVNEFLAQVRKDYEIVLRKKTELEAKVNELDER 56 (57)
T ss_dssp EHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 333334444555555556666666666666666543
No 216
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=23.29 E-value=2.4e+02 Score=21.15 Aligned_cols=20 Identities=20% Similarity=0.355 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q 022964 130 LFKEKEKLKAEVLKLTDKLQ 149 (289)
Q Consensus 130 l~~ene~L~~e~~~l~~~l~ 149 (289)
....|+.|..|+.+|++++.
T Consensus 50 ae~rn~eL~~e~~~l~~~~e 69 (81)
T 1wt6_A 50 AEARNRDLEAHVRQLQERME 69 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33445555555555555443
No 217
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=23.07 E-value=99 Score=23.97 Aligned_cols=30 Identities=37% Similarity=0.624 Sum_probs=13.3
Q ss_pred hhhhHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 022964 119 SYNSLKADYDNLFKEKEKLKAEVLKLTDKL 148 (289)
Q Consensus 119 ~~~~lk~~~~~l~~ene~L~~e~~~l~~~l 148 (289)
.|+.++..+..|..++.....++.+|+..|
T Consensus 6 ~~e~lre~l~~le~~~~~~~~e~~~L~~~l 35 (97)
T 2eqb_B 6 NYNQLKEDYNTLKRELSDRDDEVKRLREDI 35 (97)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 334444444444444444444444444433
No 218
>1pdn_C Protein (PRD paired); protein-DNA complex, double helix, PAX, paired domain, DNA-binding protein, gene regulation/DNA complex; HET: DNA; 2.50A {Drosophila melanogaster} SCOP: a.4.1.5
Probab=22.99 E-value=1.7e+02 Score=21.29 Aligned_cols=45 Identities=9% Similarity=-0.061 Sum_probs=29.5
Q ss_pred CcCCHHHHHHHHhhhhccCCCCHHHHHHHHHHhCC-------ChhhhhhHhh
Q 022964 54 RRLTVDQVQFLEKSFEVENKLEPERKIQLAKDLGL-------QPRQVAIWFQ 98 (289)
Q Consensus 54 ~R~T~eQl~~LE~~F~~~~~P~~~~r~~LA~~LgL-------s~rQVkvWFQ 98 (289)
+.++.++...+......++..+..+......+.|+ +...|..|..
T Consensus 74 ~~l~~~~~~~i~~~~~~~~~~s~~~i~~~l~~~g~~~~~~~~s~~tv~r~l~ 125 (128)
T 1pdn_C 74 RIATPEIENRIEEYKRSSPGMFSWEIREKLIREGVCDRSTAPSVSAISRLVR 125 (128)
T ss_dssp CSSCSTHHHHHHHTTTTCTTCCHHHHHHHHHHTSSSCSTTCCCHHHHHHHC-
T ss_pred CcCCHHHHHHHHHHHHhCcchHHHHHHHHHHHcCCccccCCcCHHHHHHHHH
Confidence 35788788888888877776666544433223374 7788888875
No 219
>1pdn_C Protein (PRD paired); protein-DNA complex, double helix, PAX, paired domain, DNA-binding protein, gene regulation/DNA complex; HET: DNA; 2.50A {Drosophila melanogaster} SCOP: a.4.1.5
Probab=22.95 E-value=1.6e+02 Score=21.45 Aligned_cols=40 Identities=10% Similarity=0.013 Sum_probs=29.0
Q ss_pred cCCHHHHHHHHhhhhccCCCCHHHHHHHHHHhCCChhhhhhHhhh
Q 022964 55 RLTVDQVQFLEKSFEVENKLEPERKIQLAKDLGLQPRQVAIWFQN 99 (289)
Q Consensus 55 R~T~eQl~~LE~~F~~~~~P~~~~r~~LA~~LgLs~rQVkvWFQN 99 (289)
.++.++...+-..+.. .+ ...++|+.+|++...|..|+..
T Consensus 17 ~~s~~~r~~i~~~~~~-g~----s~~~ia~~lgis~~Tv~~w~~~ 56 (128)
T 1pdn_C 17 PLPNNIRLKIVEMAAD-GI----RPCVISRQLRVSHGCVSKILNR 56 (128)
T ss_dssp CCCHHHHHHHHHHHHT-TC----CHHHHHHHHTCCHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHc-CC----CHHHHHHHHCcCHHHHHHHHHH
Confidence 4777776666555643 22 2467899999999999999864
No 220
>3w03_C DNA repair protein XRCC4; coiled-coil, NHEJ, DSBS repair, KU70/80, DNA-PKCS, DNA ligas binding protein; HET: DNA; 8.49A {Homo sapiens}
Probab=22.87 E-value=1.5e+02 Score=25.47 Aligned_cols=39 Identities=13% Similarity=0.041 Sum_probs=31.5
Q ss_pred HHHHHhhhhhhHHHhhHHHHHHHHHHHHHHHHHHHHHhh
Q 022964 112 DYDVLQNSYNSLKADYDNLFKEKEKLKAEVLKLTDKLQV 150 (289)
Q Consensus 112 e~~~l~~~~~~lk~~~~~l~~ene~L~~e~~~l~~~l~~ 150 (289)
..+..+.-++.+...+..|..+|++|+.++.+|+.....
T Consensus 139 p~e~i~elid~~ld~~~~L~~~n~~LqkeNeRL~~E~n~ 177 (184)
T 3w03_C 139 PAEVIRELICYCLDTIAENQAKNEHLQKENERLLRDWND 177 (184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445667778888888999999999999999999876653
No 221
>3gyk_A 27KDA outer membrane protein; APC61738.2, silicibacter pomeroyi DSS-3, thioredoxin-like, oxidoreductase, structural genomics, PSI-2; HET: MSE; 1.76A {Silicibacter pomeroyi}
Probab=22.81 E-value=2.3e+02 Score=22.00 Aligned_cols=41 Identities=15% Similarity=0.235 Sum_probs=31.4
Q ss_pred HHHHhhhhccCCCCHHHHHHHHHHhCCChhhhhhHhhhhHH
Q 022964 62 QFLEKSFEVENKLEPERKIQLAKDLGLQPRQVAIWFQNRRA 102 (289)
Q Consensus 62 ~~LE~~F~~~~~P~~~~r~~LA~~LgLs~rQVkvWFQNRRa 102 (289)
...+..|......+......+|.++||....+.-++.....
T Consensus 86 ~~~~~lf~~~~~~~~~~l~~~a~~~Gld~~~~~~~~~~~~~ 126 (175)
T 3gyk_A 86 AFHWALMGMSGKANETGVLRIAREVGLDTEQLQRDMEAPEV 126 (175)
T ss_dssp HHHHHHHTCSSCCSHHHHHHHHHHTTCCHHHHHHHTTCHHH
T ss_pred HHHHHHHhcCCCCCHHHHHHHHHHcCCCHHHHHHHHhChHH
Confidence 34456677777778888999999999999888877765443
No 222
>1r8d_A Transcription activator MTAN; protein-DNA complex, transcription/DNA complex; 2.70A {Bacillus subtilis} SCOP: a.6.1.3 PDB: 1jbg_A
Probab=22.34 E-value=2.5e+02 Score=20.97 Aligned_cols=34 Identities=12% Similarity=0.241 Sum_probs=25.4
Q ss_pred CCcCCHHHHHHHHhhhhccCCCCHHHHHHHHHHhCCChhhhhhHhhh
Q 022964 53 KRRLTVDQVQFLEKSFEVENKLEPERKIQLAKDLGLQPRQVAIWFQN 99 (289)
Q Consensus 53 R~R~T~eQl~~LE~~F~~~~~P~~~~r~~LA~~LgLs~rQVkvWFQN 99 (289)
.+.|+.+++..|... ...+.+|++...|+..+..
T Consensus 38 ~R~Y~~~dl~~l~~I-------------~~l~~~G~~l~~I~~~l~~ 71 (109)
T 1r8d_A 38 YRLYSDADLERLQQI-------------LFFKEIGFRLDEIKEMLDH 71 (109)
T ss_dssp CEEBCHHHHHHHHHH-------------HHHHHTTCCHHHHHHHHHC
T ss_pred CeeeCHHHHHHHHHH-------------HHHHHCCCCHHHHHHHHhC
Confidence 456999999988432 2357889999999888865
No 223
>3pvv_A Chromosomal replication initiator protein DNAA; helix-turn-helix motif, interacting with DNAA-BOX, DNAA-box; HET: DNA; 2.00A {Mycobacterium tuberculosis} PDB: 3pvp_A*
Probab=22.34 E-value=82 Score=24.15 Aligned_cols=23 Identities=17% Similarity=0.335 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhh
Q 022964 129 NLFKEKEKLKAEVLKLTDKLQVK 151 (289)
Q Consensus 129 ~l~~ene~L~~e~~~l~~~l~~~ 151 (289)
.+..++..|+.++..|+.+|...
T Consensus 76 ~~~~~d~~l~~~i~~l~~~l~~~ 98 (101)
T 3pvv_A 76 SEMAERREVFDHVKELTTRIRQR 98 (101)
T ss_dssp HHHHHCHHHHHHHHHHHHHHHHH
T ss_pred HHHHhCHHHHHHHHHHHHHHHhh
Confidence 35556778888888888777643
No 224
>3hh0_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, 11183J, structural genomics; 2.67A {Bacillus cereus atcc 14579}
Probab=22.22 E-value=2.8e+02 Score=22.09 Aligned_cols=20 Identities=10% Similarity=0.022 Sum_probs=16.9
Q ss_pred HHHHHHHhCCChhhhhhHhh
Q 022964 79 KIQLAKDLGLQPRQVAIWFQ 98 (289)
Q Consensus 79 r~~LA~~LgLs~rQVkvWFQ 98 (289)
+.++|+.+|++.+.++.|=+
T Consensus 7 I~evA~~~Gvs~~tLR~ye~ 26 (146)
T 3hh0_A 7 ISEFASVGDVTVRALRYYDK 26 (146)
T ss_dssp HHHHHHHHTCCHHHHHHHHH
T ss_pred HHHHHHHHCcCHHHHHHHHH
Confidence 45789999999999999944
No 225
>1u78_A TC3 transposase, transposable element TC3 transposase; transposon DNA, bipartite DNA-binding, HTH- motif, DNA binding protein/DNA complex; 2.69A {Caenorhabditis elegans} SCOP: a.4.1.2 a.4.1.2
Probab=22.07 E-value=1.3e+02 Score=22.63 Aligned_cols=44 Identities=9% Similarity=0.120 Sum_probs=30.8
Q ss_pred CcCCHHHHHHHHhhhhccCCCCHHHHHHHHHHhC--CChhhhhhHhhhhH
Q 022964 54 RRLTVDQVQFLEKSFEVENKLEPERKIQLAKDLG--LQPRQVAIWFQNRR 101 (289)
Q Consensus 54 ~R~T~eQl~~LE~~F~~~~~P~~~~r~~LA~~Lg--Ls~rQVkvWFQNRR 101 (289)
+.++.++...+... ..++..+. .+|+..|| ++...|..|+....
T Consensus 59 ~~l~~~~~~~i~~~-~~~~~~s~---~~i~~~lg~~~s~~tV~r~l~~~g 104 (141)
T 1u78_A 59 KALSVRDERNVIRA-ASNSCKTA---RDIRNELQLSASKRTILNVIKRSG 104 (141)
T ss_dssp CSSCHHHHHHHHHH-HHHCCCCH---HHHHHHTTCCSCHHHHHHHHHHTC
T ss_pred CcCCHHHHHHHHHH-HhCCCCCH---HHHHHHHCCCccHHHHHHHHHHCC
Confidence 34888887777666 44454444 45778888 78999999986543
No 226
>1deb_A APC protein, adenomatous polyposis coli protein; coiled coil, tumor suppressor, structural protein; 2.40A {Homo sapiens} SCOP: h.1.18.1
Probab=22.03 E-value=2e+02 Score=19.79 Aligned_cols=35 Identities=14% Similarity=0.270 Sum_probs=14.4
Q ss_pred HHHHhhhhhhHHHhhHHHHHHHHHHHHHHHHHHHH
Q 022964 113 YDVLQNSYNSLKADYDNLFKEKEKLKAEVLKLTDK 147 (289)
Q Consensus 113 ~~~l~~~~~~lk~~~~~l~~ene~L~~e~~~l~~~ 147 (289)
.+.|+..+..|+++...-....-+|+.|...+|+-
T Consensus 12 Ve~Lk~ENshLrrEL~dNS~~lskLE~ets~mKev 46 (54)
T 1deb_A 12 VEALKMENSNLRQELEDNSNHLTKLETEASNMKEV 46 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHhhHHHHHHHHhhhhhHHHH
Confidence 33444444444433333333334444444444443
No 227
>2ef8_A C.ECOT38IS, putative transcription factor; helix-turn-helix, DNA binding protein, transcription regulator; HET: CME; 1.95A {Enterobacteria phage P2}
Probab=22.03 E-value=49 Score=22.77 Aligned_cols=23 Identities=26% Similarity=0.221 Sum_probs=20.1
Q ss_pred HHHHHHHhCCChhhhhhHhhhhH
Q 022964 79 KIQLAKDLGLQPRQVAIWFQNRR 101 (289)
Q Consensus 79 r~~LA~~LgLs~rQVkvWFQNRR 101 (289)
..+||+.+|++...|..|-.+++
T Consensus 26 q~~lA~~~gis~~~i~~~e~g~~ 48 (84)
T 2ef8_A 26 QSELAIFLGLSQSDISKIESFER 48 (84)
T ss_dssp HHHHHHHHTCCHHHHHHHHTTSS
T ss_pred HHHHHHHhCCCHHHHHHHHcCCC
Confidence 46799999999999999998764
No 228
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=21.59 E-value=2.5e+02 Score=26.92 Aligned_cols=62 Identities=10% Similarity=0.163 Sum_probs=31.3
Q ss_pred hhhHhhhhHHHHHHHHHHHHHHHHhhhhhhHHHh---hHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 022964 93 VAIWFQNRRARWKTKQLEKDYDVLQNSYNSLKAD---YDNLFKEKEKLKAEVLKLTDKLQVKEKE 154 (289)
Q Consensus 93 VkvWFQNRRak~Krk~~e~e~~~l~~~~~~lk~~---~~~l~~ene~L~~e~~~l~~~l~~~~~~ 154 (289)
+..|=+.|..+.+...++.+.+.+......++.. ...|.++...|+.++..|.+++..-+..
T Consensus 34 ~~l~~~~r~~~~~~~~l~~~~n~~sk~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 98 (455)
T 2dq0_A 34 LKLDTEWRTKLKEINRLRHERNKIAVEIGKRRKKGEPVDELLAKSREIVKRIGELENEVEELKKK 98 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCCTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445444555555555555555555554443322 3445555555555555555555544443
No 229
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=21.53 E-value=5.7e+02 Score=24.88 Aligned_cols=65 Identities=17% Similarity=0.297 Sum_probs=36.0
Q ss_pred hhhhhHhhhhHHHHHHHHHHHHHHHHhhhhhhHHH-----------hhHHHHHHHHHHHHHHHHHHHHHhhhhhhc
Q 022964 91 RQVAIWFQNRRARWKTKQLEKDYDVLQNSYNSLKA-----------DYDNLFKEKEKLKAEVLKLTDKLQVKEKES 155 (289)
Q Consensus 91 rQVkvWFQNRRak~Krk~~e~e~~~l~~~~~~lk~-----------~~~~l~~ene~L~~e~~~l~~~l~~~~~~~ 155 (289)
.-+..|=+.|..+.+...++.+.+.+......++. +...|.++...|+.++..|.+++...+...
T Consensus 71 ~~~~ld~~~r~~~~~~~~l~~~rn~~sk~i~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~i~~l~~~~~~~~~~l 146 (501)
T 1wle_A 71 GIISTWQELRQLREQIRSLEEEKEAVTEAVRALVVNQDNSQVQQDPQYQSLRARGREIRKQLTLLYPKEAQLEEQF 146 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCTTGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556655565656666666666666555554443 223555666666666666655555444433
No 230
>3q4f_C DNA repair protein XRCC4; DSB repair, nuclear, recombination-recombination complex, DN protein-protein binding complex; HET: DNA; 5.50A {Homo sapiens}
Probab=21.49 E-value=1.3e+02 Score=25.98 Aligned_cols=22 Identities=27% Similarity=0.302 Sum_probs=13.1
Q ss_pred hhhHHHhhHHHHHHHHHHHHHH
Q 022964 120 YNSLKADYDNLFKEKEKLKAEV 141 (289)
Q Consensus 120 ~~~lk~~~~~l~~ene~L~~e~ 141 (289)
...|++.+..|++||++|..+-
T Consensus 163 i~~L~a~N~hLqkENeRL~~e~ 184 (186)
T 3q4f_C 163 IAENQAKNEHLQKENERLLRDW 184 (186)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhh
Confidence 3445566666666666666553
No 231
>2pmy_A RAS and EF-hand domain-containing protein; rasef, calcium-binding domain, structural genomics, structural genomics consortium, SGC; 2.30A {Homo sapiens}
Probab=21.38 E-value=67 Score=22.66 Aligned_cols=44 Identities=23% Similarity=0.315 Sum_probs=36.2
Q ss_pred cCCHHHHHHHHhhhhc-----cCCCCHHHHHHHHHHhCCChhhhhhHhh
Q 022964 55 RLTVDQVQFLEKSFEV-----ENKLEPERKIQLAKDLGLQPRQVAIWFQ 98 (289)
Q Consensus 55 R~T~eQl~~LE~~F~~-----~~~P~~~~r~~LA~~LgLs~rQVkvWFQ 98 (289)
.++.+++..|...|.. +.+.+..+-..+...+|++..+|..+|.
T Consensus 20 ~l~~~~~~~l~~~F~~~D~d~~G~I~~~El~~~l~~~g~~~~~~~~~~~ 68 (91)
T 2pmy_A 20 DGDGEELARLRSVFAACDANRSGRLEREEFRALCTELRVRPADAEAVFQ 68 (91)
T ss_dssp HHHHHHHHHHHHHHHHHCTTCSSSEEHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHCCCCCCCCcHHHHHHHHHHcCcCHHHHHHHHH
Confidence 4888999999999863 4478888888888899998888888775
No 232
>1b0n_A Protein (SINR protein); transcription regulator, antagonist, sporulation; 1.90A {Bacillus subtilis} SCOP: a.34.1.1 a.35.1.3 PDB: 2yal_A
Probab=21.22 E-value=64 Score=23.52 Aligned_cols=20 Identities=20% Similarity=0.222 Sum_probs=13.0
Q ss_pred HHHHHHhCCChhhhhhHhhh
Q 022964 80 IQLAKDLGLQPRQVAIWFQN 99 (289)
Q Consensus 80 ~~LA~~LgLs~rQVkvWFQN 99 (289)
.+||..+|++...|..|..+
T Consensus 18 ~~lA~~~gis~~~i~~~e~g 37 (111)
T 1b0n_A 18 SELAEKAGVAKSYLSSIERN 37 (111)
T ss_dssp HHHHHHHTCCHHHHHHHHTT
T ss_pred HHHHHHHCcCHHHHHHHHcC
Confidence 45666666666666666665
No 233
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=21.04 E-value=3.1e+02 Score=21.64 Aligned_cols=37 Identities=27% Similarity=0.311 Sum_probs=21.2
Q ss_pred HHHHHhhhhhhHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 022964 112 DYDVLQNSYNSLKADYDNLFKEKEKLKAEVLKLTDKL 148 (289)
Q Consensus 112 e~~~l~~~~~~lk~~~~~l~~ene~L~~e~~~l~~~l 148 (289)
....|+++.+-.+.+|.+-+..-+++..+..+|..+|
T Consensus 63 ~I~vLkaQv~IY~~DF~aERadREkl~~eKe~L~~ql 99 (110)
T 2v4h_A 63 TVPVLKAQADIYKADFQAERHAREKLVEKKEYLQEQL 99 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHccchhhHHHHHhHHHHHHHHH
Confidence 4566777777666666665555555555544444443
No 234
>3bdn_A Lambda repressor; repressor, allostery; HET: DNA; 3.91A {Enterobacteria phage lambda}
Probab=20.95 E-value=41 Score=28.31 Aligned_cols=24 Identities=17% Similarity=0.310 Sum_probs=20.5
Q ss_pred HHHHHHHHhCCChhhhhhHhhhhH
Q 022964 78 RKIQLAKDLGLQPRQVAIWFQNRR 101 (289)
Q Consensus 78 ~r~~LA~~LgLs~rQVkvWFQNRR 101 (289)
...+||+.+|++...|..|..+++
T Consensus 32 t~~~lA~~~gis~~~i~~~~~g~~ 55 (236)
T 3bdn_A 32 SQESVADKMGMGQSGVGALFNGIN 55 (236)
T ss_dssp CSHHHHHHHTSCHHHHHHHTTTTS
T ss_pred CHHHHHHHHCcCHHHHHHHHcCCC
Confidence 356899999999999999997754
No 235
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=20.84 E-value=1.2e+02 Score=28.99 Aligned_cols=43 Identities=28% Similarity=0.414 Sum_probs=19.3
Q ss_pred hHHHHHHHHHHHHHHHHhhhhhhHHHhhHHHHHHHHHHHHHHH
Q 022964 100 RRARWKTKQLEKDYDVLQNSYNSLKADYDNLFKEKEKLKAEVL 142 (289)
Q Consensus 100 RRak~Krk~~e~e~~~l~~~~~~lk~~~~~l~~ene~L~~e~~ 142 (289)
..-..|-++++++.+.|....+.++.+...+..+...++.|+.
T Consensus 45 ~dl~~~lk~le~~~~~L~~e~e~l~~~~~~~~~e~~~~~ee~~ 87 (428)
T 4b4t_K 45 SDIYFKLKKLEKEYELLTLQEDYIKDEQRHLKRELKRAQEEVK 87 (428)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444455555555555555454444444444444444443
No 236
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=20.82 E-value=2.1e+02 Score=21.73 Aligned_cols=50 Identities=24% Similarity=0.290 Sum_probs=38.2
Q ss_pred hHhhhhHHHHH--HHHHHHHHHHHhhhhhhHHHhhHHHHHHHHHHHHHHHHH
Q 022964 95 IWFQNRRARWK--TKQLEKDYDVLQNSYNSLKADYDNLFKEKEKLKAEVLKL 144 (289)
Q Consensus 95 vWFQNRRak~K--rk~~e~e~~~l~~~~~~lk~~~~~l~~ene~L~~e~~~l 144 (289)
.+-||.|.|-- +..++.+...|....+.|+.++..+..|.+.++..+..|
T Consensus 37 gyAq~CR~Kr~~q~~~LE~e~~~L~~e~~~L~~e~~~~~~e~d~~k~k~~~L 88 (90)
T 2wt7_B 37 GYAQSCRYKRVQQKHHLENEKTQLIQQVEQLKQEVSRLARERDAYKVKSEKL 88 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34456555543 345677788888999999999999999999999887665
No 237
>2ict_A Antitoxin HIGA; helix-turn-helix, structural genomics, PSI-2, protein struct initiative, northeast structural genomics consortium, NESG; 1.63A {Escherichia coli} SCOP: a.35.1.3 PDB: 2icp_A
Probab=20.80 E-value=54 Score=23.46 Aligned_cols=23 Identities=9% Similarity=0.271 Sum_probs=20.3
Q ss_pred HHHHHHHhCCChhhhhhHhhhhH
Q 022964 79 KIQLAKDLGLQPRQVAIWFQNRR 101 (289)
Q Consensus 79 r~~LA~~LgLs~rQVkvWFQNRR 101 (289)
..+||+.+|++...|..|..+++
T Consensus 24 q~~lA~~~gis~~~is~~e~g~~ 46 (94)
T 2ict_A 24 LREFARAMEIAPSTASRLLTGKA 46 (94)
T ss_dssp HHHHHHHHTCCHHHHHHHHHTSS
T ss_pred HHHHHHHhCCCHHHHHHHHcCCC
Confidence 46899999999999999998764
No 238
>3f6w_A XRE-family like protein; helix-turn-helix, DNA binding protein, xenobiotic response E family of transcriptional regulators; HET: MSE BTB; 1.85A {Pseudomonas syringae PV}
Probab=20.73 E-value=94 Score=21.35 Aligned_cols=23 Identities=26% Similarity=0.183 Sum_probs=19.6
Q ss_pred HHHHHHHhCCChhhhhhHhhhhH
Q 022964 79 KIQLAKDLGLQPRQVAIWFQNRR 101 (289)
Q Consensus 79 r~~LA~~LgLs~rQVkvWFQNRR 101 (289)
..+||..+|++...|..|-.+++
T Consensus 30 q~elA~~~gis~~~is~~e~g~~ 52 (83)
T 3f6w_A 30 QKELAARLGRPQSFVSKTENAER 52 (83)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTSS
T ss_pred HHHHHHHHCcCHHHHHHHHCCCC
Confidence 35789999999999999998764
No 239
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=20.66 E-value=3.1e+02 Score=21.43 Aligned_cols=54 Identities=11% Similarity=0.192 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHHhhhhhhHHHhhHHHHHHHHHHHHHHHHHHHHHhhhhhhcc
Q 022964 103 RWKTKQLEKDYDVLQNSYNSLKADYDNLFKEKEKLKAEVLKLTDKLQVKEKESK 156 (289)
Q Consensus 103 k~Krk~~e~e~~~l~~~~~~lk~~~~~l~~ene~L~~e~~~l~~~l~~~~~~~~ 156 (289)
|.+-.-.+.....++..+.....+...++.....|+.++..|+++|..++.-+.
T Consensus 36 KD~LEe~eE~~aql~Re~~eK~re~e~~Kr~~~~L~~~~~~lk~~L~qRD~LI~ 89 (103)
T 4h22_A 36 KDMLLELEEQLAESRRQYEEKNKEFEREKHAHSILQFQFAEVKEALKQREEMLE 89 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSCC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444455555555555666667777777778888888877776654443
No 240
>3ilw_A DNA gyrase subunit A; DNA topology, topoisomerase, antibiotic resistance, breakage-reunion domain, struct genomics; HET: DNA; 1.60A {Mycobacterium tuberculosis} SCOP: e.11.1.0 PDB: 3ifz_A*
Probab=20.66 E-value=4.7e+02 Score=25.52 Aligned_cols=74 Identities=12% Similarity=0.167 Sum_probs=49.8
Q ss_pred HHHHHHHHHHhCCChhhhhhHhh---hhHHHHHHHHHHHHHHHHhhhhhhHHHhhHHHHHHHHHHHHHHHHHHHHHh
Q 022964 76 PERKIQLAKDLGLQPRQVAIWFQ---NRRARWKTKQLEKDYDVLQNSYNSLKADYDNLFKEKEKLKAEVLKLTDKLQ 149 (289)
Q Consensus 76 ~~~r~~LA~~LgLs~rQVkvWFQ---NRRak~Krk~~e~e~~~l~~~~~~lk~~~~~l~~ene~L~~e~~~l~~~l~ 149 (289)
...+..|...++|+..|.+.=.. .|-++....+++.+++.|......|+.-........+-++.|+..++++..
T Consensus 385 ~~a~~~L~~~f~lse~Qa~aIl~mrL~rLt~le~~kl~~E~~~l~~~i~~l~~iL~~~~~~~~~i~~el~~i~~~yg 461 (470)
T 3ilw_A 385 DIARAGLIELLDIDEIQAQAILDMQLRRLAALERQRIIDDLAKIEAEIADLEDILAKPERQRGIVRDELAEIVDRHG 461 (470)
T ss_dssp HHHHHHHHHHHTCCHHHHHHHHTCBGGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhC
Confidence 45677788888999888775542 233455555666667767666666666666666667777777777776653
No 241
>1q06_A Transcriptional regulator CUER; MERR family transcriptional regulator, copper efflux regulator; 2.07A {Escherichia coli} SCOP: a.6.1.3 PDB: 1q05_A 1q07_A
Probab=20.45 E-value=3.1e+02 Score=21.41 Aligned_cols=35 Identities=14% Similarity=0.156 Sum_probs=26.5
Q ss_pred CCcCCHHHHHHHHhhhhccCCCCHHHHHHHHHHhCCChhhhhhHhhhh
Q 022964 53 KRRLTVDQVQFLEKSFEVENKLEPERKIQLAKDLGLQPRQVAIWFQNR 100 (289)
Q Consensus 53 R~R~T~eQl~~LE~~F~~~~~P~~~~r~~LA~~LgLs~rQVkvWFQNR 100 (289)
.+.|+..++..|. .....+.+|++..+|+.++...
T Consensus 36 ~R~Y~~~dl~~l~-------------~I~~lr~~G~sl~eI~~~l~~~ 70 (135)
T 1q06_A 36 YRTYTQQHLNELT-------------LLRQARQVGFNLEESGELVNLF 70 (135)
T ss_dssp CEECCHHHHHHHH-------------HHHHHHHTTCCHHHHHHHHHHH
T ss_pred CeeeCHHHHHHHH-------------HHHHHHHCCCCHHHHHHHHHhh
Confidence 4559999999883 2233588999999999998654
No 242
>2hin_A GP39, repressor protein; transcription factor, dimer interface, helix-turn-helix; 1.05A {Enterobacteria phage N15} PDB: 3qws_A
Probab=20.41 E-value=65 Score=23.16 Aligned_cols=22 Identities=27% Similarity=0.459 Sum_probs=19.5
Q ss_pred HHHHHHHhCCChhhhhhHhhhh
Q 022964 79 KIQLAKDLGLQPRQVAIWFQNR 100 (289)
Q Consensus 79 r~~LA~~LgLs~rQVkvWFQNR 100 (289)
...||+.||++..-|-.|..++
T Consensus 13 ~~~lA~~lGVs~~aVs~W~~g~ 34 (71)
T 2hin_A 13 VEKAAVGVGVTPGAVYQWLQAG 34 (71)
T ss_dssp HHHHHHHHTSCHHHHHHHHHHT
T ss_pred HHHHHHHHCCCHHHHHHHHhCC
Confidence 6789999999999999998653
No 243
>1zx4_A P1 PARB, plasmid partition PAR B protein, PARB; translation; HET: CIT; 2.98A {Enterobacteria phage P1} PDB: 2ntz_A
Probab=20.29 E-value=2.3e+02 Score=24.20 Aligned_cols=24 Identities=21% Similarity=0.195 Sum_probs=20.1
Q ss_pred HHHHHHHHHhCCChhhhhhHhhhh
Q 022964 77 ERKIQLAKDLGLQPRQVAIWFQNR 100 (289)
Q Consensus 77 ~~r~~LA~~LgLs~rQVkvWFQNR 100 (289)
....+||..||++...|..|.+.-
T Consensus 25 ~tQ~eIA~~lGiSr~~VSR~L~~A 48 (192)
T 1zx4_A 25 MSQKDIAAKEGLSQAKVTRALQAA 48 (192)
T ss_dssp CCHHHHHHHHTCCHHHHHHHHHHH
T ss_pred CCHHHHHHHhCcCHHHHHHHHHHh
Confidence 356789999999999999998643
No 244
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=20.19 E-value=1.3e+02 Score=21.74 Aligned_cols=29 Identities=21% Similarity=0.365 Sum_probs=15.3
Q ss_pred HhhhhhhHHHhhHHHHHHHHHHHHHHHHH
Q 022964 116 LQNSYNSLKADYDNLFKEKEKLKAEVLKL 144 (289)
Q Consensus 116 l~~~~~~lk~~~~~l~~ene~L~~e~~~l 144 (289)
|+.....|..+.+.|..+++.|+.++..|
T Consensus 52 L~~~~~~l~~e~~~L~~~~~~L~~~l~~L 80 (83)
T 1nkp_B 52 MRRKNHTHQQDIDDLKRQNALLEQQVRAL 80 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34444445555555566666666555443
No 245
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=20.16 E-value=1.3e+02 Score=28.68 Aligned_cols=30 Identities=20% Similarity=0.261 Sum_probs=12.3
Q ss_pred hhhHHHhhHHHHHHHHHHHHHHHHHHHHHh
Q 022964 120 YNSLKADYDNLFKEKEKLKAEVLKLTDKLQ 149 (289)
Q Consensus 120 ~~~lk~~~~~l~~ene~L~~e~~~l~~~l~ 149 (289)
...++.....|..+++.+++++..++++|.
T Consensus 12 l~~~~~~~~~l~~~~~~~~~~~~~~~~~l~ 41 (412)
T 3u06_A 12 VVHLRQRTEELLRCNEQQAAELETCKEQLF 41 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333334444444444444444444433
Done!