BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 022965
(289 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9CR14|FANCL_MOUSE E3 ubiquitin-protein ligase FANCL OS=Mus musculus GN=Fancl PE=1
SV=1
Length = 375
Score = 197 bits (501), Expect = 8e-50, Method: Compositional matrix adjust.
Identities = 92/274 (33%), Positives = 151/274 (55%), Gaps = 9/274 (3%)
Query: 12 SSSFSRSVYSEIEEVGWEHLVRLSEDLKFLSFRVIDKKGRVHCMEIQLDKNYPRSPPSIS 71
S SF + + +EI +GW+ L + + + D GR H + ++L YP PP
Sbjct: 107 SCSFCKDLLTEIGAIGWDKLACVESSFSTIKLKADDASGRKHLITVKLKAKYPVEPPDCV 166
Query: 72 ADVPYIFNLKWSRKSRLKDLLQQFREHLEKLQEIWNILDEIDKSLWVIDLKNPSRANVCR 131
D P F++ W+ +S L D+ QF LE L+ W+++DEID+ WV++ + P R+ R
Sbjct: 167 VDFPVPFSVSWTPQSSLVDVYSQFLVALETLKVFWDVMDEIDEKTWVLEPEKPPRSATAR 226
Query: 132 QINLGYNCIIMLSIHIDDPSSLPECRFMGSDPMVNSLRKTWQRNSKRWNKDKPFVENVAN 191
+I LG N I + + P+ LPE F+G+D + L + W+ + ++N+ +
Sbjct: 227 RIALGKNVSIAIEVDPRHPTMLPEFCFLGADHVTKPLGMKLSGSIHLWDPENSLLQNLKD 286
Query: 192 LLETQLPRPPEHENNYQQVECGICYAQFLPIDEELGAKSGGGTDYTCDNSSCSKAFHSVC 251
+LE P E + ++CGICYA+ L +G D C+N C + FH +C
Sbjct: 287 VLEIDFPARSILEESDFSMDCGICYARHL---------NGAIPDQVCNNPQCGQPFHEIC 337
Query: 252 LGDWLRSITTTRQSYDVLFGNCPYCSEPVAVKIS 285
L +WLR ++T+RQS++V FG+CPYCS+P+ +K+S
Sbjct: 338 LYEWLRGLSTSRQSFNVFFGDCPYCSKPITLKMS 371
>sp|Q9NW38|FANCL_HUMAN E3 ubiquitin-protein ligase FANCL OS=Homo sapiens GN=FANCL PE=1
SV=2
Length = 375
Score = 194 bits (493), Expect = 6e-49, Method: Compositional matrix adjust.
Identities = 94/271 (34%), Positives = 145/271 (53%), Gaps = 9/271 (3%)
Query: 15 FSRSVYSEIEEVGWEHLVRLSEDLKFLSFRVIDKKGRVHCMEIQLDKNYPRSPPSISADV 74
F S+ EI +GW+ LV + + D GR H + ++L YP P D
Sbjct: 110 FYSSLIEEIGTLGWDKLVYADTCFSTIKLKAEDASGREHLITLKLKAKYPAESPDYFVDF 169
Query: 75 PYIFNLKWSRKSRLKDLLQQFREHLEKLQEIWNILDEIDKSLWVIDLKNPSRANVCRQIN 134
P F W+ +S L + QF +E L+ W+++DEID+ WV++ + P R+ R+I
Sbjct: 170 PVPFCASWTPQSSLISIYSQFLAAIESLKAFWDVMDEIDEKTWVLEPEKPPRSATARRIA 229
Query: 135 LGYNCIIMLSIHIDDPSSLPECRFMGSDPMVNSLRKTWQRNSKRWNKDKPFVENVANLLE 194
LG N I + + P+ LPEC F+G+D +V L RN W+ + ++N+ ++LE
Sbjct: 230 LGNNVSINIEVDPRHPTMLPECFFLGADHVVKPLGIKLSRNIHLWDPENSVLQNLKDVLE 289
Query: 195 TQLPRPPEHENNYQQVECGICYAQFLPIDEELGAKSGGGTDYTCDNSSCSKAFHSVCLGD 254
P E + ++CGICYA L G D CDNS C + FH +CL +
Sbjct: 290 IDFPARAILEKSDFTMDCGICYAYQL---------DGTIPDQVCDNSQCGQPFHQICLYE 340
Query: 255 WLRSITTTRQSYDVLFGNCPYCSEPVAVKIS 285
WLR + T+RQS++++FG CPYCS+P+ +K+S
Sbjct: 341 WLRGLLTSRQSFNIIFGECPYCSKPITLKMS 371
>sp|Q04781|LTN1_YEAST E3 ubiquitin-protein ligase listerin OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=RKR1 PE=1 SV=1
Length = 1562
Score = 36.2 bits (82), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 23/48 (47%), Gaps = 9/48 (18%)
Query: 211 ECGICYAQFLPIDEELGAKSGGGTDYTCDNSSCSKAFHSVCLGDWLRS 258
EC ICY+ +D +L +K TC +C FH CL W RS
Sbjct: 1507 ECAICYSILHAVDRKLPSK-------TC--PTCKNKFHGACLYKWFRS 1545
>sp|B4KBJ0|SLX1_DROMO Structure-specific endonuclease subunit SLX1 homolog OS=Drosophila
mojavensis GN=slx1 PE=3 SV=1
Length = 303
Score = 35.0 bits (79), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
Query: 236 YTCDNSSCSKAFHSVCLGDWLRSITTTRQSYDVLFGNCPYCSEPVAVKISIARK 289
++C N+SC + H +CL +L + Y + GNCP C P+ + RK
Sbjct: 212 FSCLNASCCLSCHMLCLASYL--LDDQPGQYLPIVGNCPLCETPLVWAELLERK 263
>sp|Q7V275|GLGA_PROMP Glycogen synthase OS=Prochlorococcus marinus subsp. pastoris
(strain CCMP1986 / MED4) GN=glgA PE=3 SV=1
Length = 483
Score = 32.7 bits (73), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 31/120 (25%), Positives = 50/120 (41%), Gaps = 12/120 (10%)
Query: 108 ILDEIDKSLWVIDLKNPSRANVCRQINLGYNCIIMLSIHIDDPSSLPECRFMGSDPMVNS 167
+L D + ++ + S + Q+ L Y + + DD SL + GSD +
Sbjct: 297 LLAYTDSQIAILGTGDRSLESGLWQLALDYPGRFSVFLTYDD--SLSRLIYGGSDAFLMP 354
Query: 168 LR----KTWQRNSKRWNKDKPFVENVANLLETQLPRPPEHENNYQQVECGICYAQFLPID 223
R Q + R+ P V V L++T LP PE+ + G C+ +F PID
Sbjct: 355 SRFEPCGISQLLAMRYGS-IPIVRRVGGLVDTVLPHDPENNSG-----TGFCFDRFEPID 408
>sp|O74349|LTN1_SCHPO E3 ubiquitin-protein ligase listerin OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=SPBC21D10.09c PE=3 SV=1
Length = 1610
Score = 32.7 bits (73), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 28/66 (42%), Gaps = 19/66 (28%)
Query: 211 ECGICYAQFLPIDEELGAKSGGGTDYTCDNSSCSKAFHSVCLGDWLRSITTTRQSYDVLF 270
EC ICY+ L ++ L K G +C FH+ CL W +S ++R
Sbjct: 1557 ECAICYS-VLSVERTLPNKRCG---------TCRHKFHASCLYKWFKSSNSSR------- 1599
Query: 271 GNCPYC 276
CP C
Sbjct: 1600 --CPLC 1603
>sp|A2BQ90|GLGA_PROMS Glycogen synthase OS=Prochlorococcus marinus (strain AS9601)
GN=glgA PE=3 SV=1
Length = 483
Score = 32.7 bits (73), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 31/116 (26%), Positives = 45/116 (38%), Gaps = 26/116 (22%)
Query: 112 IDKSLWVIDLKNPSRANVCRQINLGYNCIIMLSIHIDDPSSLPECRFMGSDPMVNSLR-- 169
++ LW + L P R S+ + SL + GSD + R
Sbjct: 315 LESGLWQLALDYPGR----------------FSVFLTYDDSLSRLIYGGSDAFLMPSRFE 358
Query: 170 --KTWQRNSKRWNKDKPFVENVANLLETQLPRPPEHENNYQQVECGICYAQFLPID 223
Q + R+ P V V L++T LP P ENN + G C+ +F PID
Sbjct: 359 PCGISQLLAMRYGS-IPIVRRVGGLVDTVLPHDP--ENN---IGTGFCFDRFEPID 408
>sp|A8G3X5|GLGA_PROM2 Glycogen synthase OS=Prochlorococcus marinus (strain MIT 9215)
GN=glgA PE=3 SV=1
Length = 485
Score = 32.3 bits (72), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 5/40 (12%)
Query: 184 PFVENVANLLETQLPRPPEHENNYQQVECGICYAQFLPID 223
P V V L++T LP PE+ + G C+ +F PID
Sbjct: 374 PIVRRVGGLVDTVLPHDPENNHG-----TGFCFDRFEPID 408
>sp|Q8R1Z9|RN121_MOUSE RING finger protein 121 OS=Mus musculus GN=Rnf121 PE=2 SV=1
Length = 327
Score = 32.0 bits (71), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 31/73 (42%), Gaps = 17/73 (23%)
Query: 212 CGICYAQ-FLPIDEELGAKSGGGTDYTCDNSSCSKAFHSVCLGDWLRSITTTRQSYDVLF 270
C +C Q F+ ++EE G SC+ FH C+ W I +Q+
Sbjct: 226 CAVCGQQIFVDVNEE-------GIIENTYRLSCNHVFHEFCIRGW--CIVGKKQT----- 271
Query: 271 GNCPYCSEPVAVK 283
CPYC E V +K
Sbjct: 272 --CPYCKEKVDLK 282
>sp|Q31BS5|GLGA_PROM9 Glycogen synthase OS=Prochlorococcus marinus (strain MIT 9312)
GN=glgA PE=3 SV=1
Length = 483
Score = 32.0 bits (71), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 44/116 (37%), Gaps = 26/116 (22%)
Query: 112 IDKSLWVIDLKNPSRANVCRQINLGYNCIIMLSIHIDDPSSLPECRFMGSDPMVNSLR-- 169
++ LW + L P R S+ + SL + GSD + R
Sbjct: 315 LESGLWQLALDYPGR----------------FSVFLTYDDSLSRLIYGGSDAFLMPSRFE 358
Query: 170 --KTWQRNSKRWNKDKPFVENVANLLETQLPRPPEHENNYQQVECGICYAQFLPID 223
Q + R+ P V V L++T LP PE+ + G C+ +F PID
Sbjct: 359 PCGISQLLAMRYGS-VPIVRRVGGLVDTVLPHDPENNSG-----TGFCFDRFEPID 408
>sp|A3PBY3|GLGA_PROM0 Glycogen synthase OS=Prochlorococcus marinus (strain MIT 9301)
GN=glgA PE=3 SV=1
Length = 483
Score = 32.0 bits (71), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 5/40 (12%)
Query: 184 PFVENVANLLETQLPRPPEHENNYQQVECGICYAQFLPID 223
P V V L++T LP PE+ + G C+ +F PID
Sbjct: 374 PIVRRVGGLVDTVLPHDPENNSG-----TGFCFDRFEPID 408
>sp|Q6DD32|RN121_XENLA RING finger protein 121 OS=Xenopus laevis GN=rnf121 PE=2 SV=1
Length = 327
Score = 32.0 bits (71), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 31/73 (42%), Gaps = 17/73 (23%)
Query: 212 CGICYAQ-FLPIDEELGAKSGGGTDYTCDNSSCSKAFHSVCLGDWLRSITTTRQSYDVLF 270
C +C Q F+ ++EE G SC+ FH C+ W I +Q+
Sbjct: 226 CAVCGQQIFVDVNEE-------GIIENTYRLSCNHVFHEFCIRGW--CIVGKKQT----- 271
Query: 271 GNCPYCSEPVAVK 283
CPYC E V +K
Sbjct: 272 --CPYCKEKVDLK 282
>sp|Q6P360|RN121_XENTR RING finger protein 121 OS=Xenopus tropicalis GN=rnf121 PE=2 SV=1
Length = 327
Score = 32.0 bits (71), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 31/73 (42%), Gaps = 17/73 (23%)
Query: 212 CGICYAQ-FLPIDEELGAKSGGGTDYTCDNSSCSKAFHSVCLGDWLRSITTTRQSYDVLF 270
C +C Q F+ ++EE G SC+ FH C+ W I +Q+
Sbjct: 226 CAVCGQQIFVDVNEE-------GIIENTYRLSCNHVFHEFCIRGW--CIVGKKQT----- 271
Query: 271 GNCPYCSEPVAVK 283
CPYC E V +K
Sbjct: 272 --CPYCKEKVDLK 282
>sp|B2WM34|SLX1_PYRTR Structure-specific endonuclease subunit slx1 OS=Pyrenophora
tritici-repentis (strain Pt-1C-BFP) GN=slx1 PE=3 SV=1
Length = 364
Score = 31.6 bits (70), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 22/98 (22%), Positives = 36/98 (36%), Gaps = 20/98 (20%)
Query: 183 KPFVENVANLLETQLPRPPEHENNYQQVECGICYAQFLPIDEELGAKSGGGTDYTCDNSS 242
KP+VE + L R +CG+C + +D L C N +
Sbjct: 214 KPYVEKSMSTLRDGKTR-----------DCGVCKKD-VNVDRSLV--------LICPNET 253
Query: 243 CSKAFHSVCLGDWLRSITTTRQSYDVLFGNCPYCSEPV 280
C H CL + ++++ + G CP C P+
Sbjct: 254 CCSVSHMSCLSQRFLAEEANKEAFIPIEGTCPSCHSPI 291
>sp|P0C041|ATL53_ARATH Putative RING-H2 finger protein ATL53 OS=Arabidopsis thaliana
GN=ATL53 PE=3 SV=2
Length = 310
Score = 31.6 bits (70), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 29/118 (24%), Positives = 47/118 (39%), Gaps = 32/118 (27%)
Query: 177 KRWNKDKPFV--ENVANLLETQLPRP-----PEHENNYQ--QVECGICYAQFLPIDEELG 227
+R ++D PF + A L +T + + +H+N ++ +C IC +F DE L
Sbjct: 111 ERGDQDDPFALESSTAGLDDTLIKKIGFFKLKKHQNGFKINGTDCSICLGEFNE-DESLR 169
Query: 228 AKSGGGTDYTCDNSSCSKAFHSVCLGDWLRSITTTRQSYDVLFGNCPYCSEPVAVKIS 285
C+ FH VC+ WL+S NCP C + V +
Sbjct: 170 LLP-----------KCNHTFHVVCIDRWLKS-----------HSNCPLCRAKIIVPTT 205
>sp|Q9H920|RN121_HUMAN RING finger protein 121 OS=Homo sapiens GN=RNF121 PE=2 SV=1
Length = 327
Score = 31.2 bits (69), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 30/73 (41%), Gaps = 17/73 (23%)
Query: 212 CGICYAQ-FLPIDEELGAKSGGGTDYTCDNSSCSKAFHSVCLGDWLRSITTTRQSYDVLF 270
C +C Q F+ + EE G SC+ FH C+ W I +Q+
Sbjct: 226 CAVCGQQIFVDVSEE-------GIIENTYRLSCNHVFHEFCIRGW--CIVGKKQT----- 271
Query: 271 GNCPYCSEPVAVK 283
CPYC E V +K
Sbjct: 272 --CPYCKEKVDLK 282
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.134 0.421
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 112,769,846
Number of Sequences: 539616
Number of extensions: 4731683
Number of successful extensions: 12464
Number of sequences better than 100.0: 34
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 29
Number of HSP's that attempted gapping in prelim test: 12449
Number of HSP's gapped (non-prelim): 34
length of query: 289
length of database: 191,569,459
effective HSP length: 116
effective length of query: 173
effective length of database: 128,974,003
effective search space: 22312502519
effective search space used: 22312502519
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 61 (28.1 bits)