Query 022965
Match_columns 289
No_of_seqs 179 out of 514
Neff 5.2
Searched_HMMs 46136
Date Fri Mar 29 07:27:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022965.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/022965hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3268 Predicted E3 ubiquitin 100.0 6.2E-67 1.4E-71 456.2 1.1 233 46-287 2-234 (234)
2 PF09765 WD-3: WD-repeat regio 100.0 6E-64 1.3E-68 470.2 14.2 188 12-200 97-291 (291)
3 PF11793 FANCL_C: FANCL C-term 99.9 7.5E-23 1.6E-27 155.1 1.9 69 209-285 2-70 (70)
4 PF12861 zf-Apc11: Anaphase-pr 99.3 2.9E-12 6.3E-17 100.8 3.7 62 209-283 21-84 (85)
5 PF13639 zf-RING_2: Ring finge 99.1 1.9E-11 4.1E-16 83.9 1.4 43 211-277 2-44 (44)
6 PF12678 zf-rbx1: RING-H2 zinc 99.0 1.4E-10 3E-15 88.5 2.9 53 209-277 19-73 (73)
7 KOG1493 Anaphase-promoting com 99.0 7.4E-11 1.6E-15 91.0 0.4 61 210-283 21-83 (84)
8 COG5219 Uncharacterized conser 99.0 1.4E-10 3.1E-15 121.5 1.8 60 205-282 1465-1524(1525)
9 COG5194 APC11 Component of SCF 98.9 4E-10 8.6E-15 87.7 2.8 61 210-283 21-83 (88)
10 PHA02929 N1R/p28-like protein; 98.9 2E-09 4.3E-14 99.3 4.5 55 208-282 173-228 (238)
11 COG5243 HRD1 HRD ubiquitin lig 98.6 4.5E-08 9.8E-13 94.9 4.0 64 206-284 284-348 (491)
12 KOG4628 Predicted E3 ubiquitin 98.5 3.5E-08 7.7E-13 95.3 2.6 48 210-280 230-277 (348)
13 COG5540 RING-finger-containing 98.5 7.9E-08 1.7E-12 91.1 2.7 53 206-281 320-372 (374)
14 PLN03208 E3 ubiquitin-protein 98.4 2.8E-07 6E-12 82.7 4.5 61 207-283 16-81 (193)
15 cd00162 RING RING-finger (Real 98.4 3.3E-07 7.1E-12 60.6 3.1 45 211-280 1-45 (45)
16 PHA02926 zinc finger-like prot 98.3 7E-07 1.5E-11 81.7 4.5 62 208-281 169-230 (242)
17 PF13920 zf-C3HC4_3: Zinc fing 98.1 1.3E-06 2.8E-11 61.5 2.4 46 209-281 2-48 (50)
18 KOG0802 E3 ubiquitin ligase [P 98.1 1.4E-06 3E-11 88.7 3.1 53 206-280 288-340 (543)
19 KOG2930 SCF ubiquitin ligase, 98.1 1.2E-06 2.5E-11 71.5 1.9 61 209-282 46-109 (114)
20 PF13923 zf-C3HC4_2: Zinc fing 98.0 3E-06 6.5E-11 56.7 2.4 39 212-276 1-39 (39)
21 smart00184 RING Ring finger. E 98.0 5.8E-06 1.3E-10 52.6 2.7 26 241-276 14-39 (39)
22 KOG0827 Predicted E3 ubiquitin 97.9 3.9E-06 8.4E-11 81.9 2.3 53 208-280 3-55 (465)
23 smart00504 Ubox Modified RING 97.9 9.5E-06 2.1E-10 58.7 3.7 48 210-284 2-49 (63)
24 KOG0317 Predicted E3 ubiquitin 97.9 9.4E-06 2E-10 76.6 3.3 49 207-282 237-285 (293)
25 KOG0320 Predicted E3 ubiquitin 97.9 1E-05 2.2E-10 71.8 3.2 53 207-284 129-181 (187)
26 KOG0828 Predicted E3 ubiquitin 97.8 8.7E-06 1.9E-10 81.6 1.9 62 208-281 570-634 (636)
27 TIGR00599 rad18 DNA repair pro 97.7 3.6E-05 7.8E-10 76.0 4.4 49 207-282 24-72 (397)
28 KOG0823 Predicted E3 ubiquitin 97.7 2.5E-05 5.4E-10 71.7 2.9 56 206-285 44-99 (230)
29 PF00097 zf-C3HC4: Zinc finger 97.6 3.6E-05 7.7E-10 51.5 2.3 41 212-276 1-41 (41)
30 PF14634 zf-RING_5: zinc-RING 97.6 5E-05 1.1E-09 52.2 2.6 44 211-278 1-44 (44)
31 KOG1734 Predicted RING-contain 97.5 2.1E-05 4.6E-10 73.9 0.3 62 208-284 223-284 (328)
32 KOG0287 Postreplication repair 97.2 0.00022 4.7E-09 69.1 3.1 47 208-281 22-68 (442)
33 smart00744 RINGv The RING-vari 97.2 0.0003 6.5E-09 49.9 2.7 24 245-277 26-49 (49)
34 KOG4445 Uncharacterized conser 97.1 0.00048 1E-08 65.7 4.4 127 139-285 47-190 (368)
35 KOG2164 Predicted E3 ubiquitin 96.9 0.00072 1.6E-08 68.3 3.1 53 209-283 186-238 (513)
36 PF15227 zf-C3HC4_4: zinc fing 96.8 0.0011 2.4E-08 45.5 2.6 42 212-276 1-42 (42)
37 KOG0804 Cytoplasmic Zn-finger 96.5 0.00092 2E-08 66.7 0.8 49 208-281 174-222 (493)
38 KOG1645 RING-finger-containing 96.4 0.002 4.3E-08 63.7 2.7 52 207-279 2-54 (463)
39 KOG1039 Predicted E3 ubiquitin 96.0 0.008 1.7E-07 58.6 4.5 64 208-283 160-223 (344)
40 COG5574 PEX10 RING-finger-cont 95.8 0.0063 1.4E-07 57.2 2.7 50 208-283 214-264 (271)
41 KOG1428 Inhibitor of type V ad 95.8 0.0059 1.3E-07 68.1 2.6 62 205-281 3482-3544(3738)
42 PF04564 U-box: U-box domain; 95.7 0.0088 1.9E-07 45.3 2.7 50 209-284 4-53 (73)
43 cd00195 UBCc Ubiquitin-conjuga 95.6 0.072 1.6E-06 44.6 8.3 82 17-99 2-109 (141)
44 COG5432 RAD18 RING-finger-cont 95.6 0.0067 1.4E-07 58.0 2.2 47 207-280 23-69 (391)
45 TIGR00570 cdk7 CDK-activating 95.4 0.015 3.1E-07 56.0 3.6 52 210-283 4-56 (309)
46 KOG1941 Acetylcholine receptor 95.4 0.0061 1.3E-07 60.3 1.0 52 208-280 364-415 (518)
47 PF10272 Tmpp129: Putative tra 95.3 0.15 3.3E-06 50.1 10.3 141 140-282 197-352 (358)
48 PF05883 Baculo_RING: Baculovi 95.3 0.005 1.1E-07 52.6 0.0 52 189-255 14-65 (134)
49 KOG4172 Predicted E3 ubiquitin 95.2 0.0087 1.9E-07 44.0 1.1 48 209-282 7-55 (62)
50 KOG1952 Transcription factor N 95.2 0.013 2.9E-07 62.4 2.8 56 207-278 189-244 (950)
51 PF14835 zf-RING_6: zf-RING of 94.9 0.011 2.4E-07 44.6 1.1 44 211-282 9-52 (65)
52 PF08746 zf-RING-like: RING-li 94.8 0.021 4.5E-07 39.5 2.2 43 212-276 1-43 (43)
53 PTZ00390 ubiquitin-conjugating 94.5 0.4 8.8E-06 41.4 9.9 85 16-100 4-112 (152)
54 PLN00172 ubiquitin conjugating 94.5 0.45 9.7E-06 40.8 10.1 84 17-100 4-111 (147)
55 PF13445 zf-RING_UBOX: RING-ty 94.5 0.028 6E-07 39.0 2.1 34 212-258 1-34 (43)
56 PHA02862 5L protein; Provision 94.4 0.044 9.6E-07 47.6 3.5 55 210-285 3-57 (156)
57 smart00212 UBCc Ubiquitin-conj 94.3 0.22 4.8E-06 41.9 7.7 82 18-99 2-109 (145)
58 PF00179 UQ_con: Ubiquitin-con 94.1 0.61 1.3E-05 38.9 10.0 82 18-99 1-108 (140)
59 KOG2177 Predicted E3 ubiquitin 94.0 0.03 6.5E-07 49.1 1.9 46 206-278 10-55 (386)
60 KOG3268 Predicted E3 ubiquitin 94.0 0.012 2.7E-07 52.7 -0.6 45 183-227 120-166 (234)
61 KOG0825 PHD Zn-finger protein 93.8 0.019 4.1E-07 61.0 0.3 29 241-280 142-170 (1134)
62 KOG2034 Vacuolar sorting prote 93.7 0.026 5.6E-07 60.5 1.1 56 209-278 817-890 (911)
63 KOG0824 Predicted E3 ubiquitin 93.5 0.046 1E-06 52.4 2.3 51 209-285 7-57 (324)
64 PHA02825 LAP/PHD finger-like p 93.5 0.11 2.5E-06 45.6 4.5 54 207-284 6-62 (162)
65 COG5078 Ubiquitin-protein liga 93.3 0.79 1.7E-05 40.0 9.4 84 15-99 6-115 (153)
66 KOG3005 GIY-YIG type nuclease 92.4 0.078 1.7E-06 50.1 2.2 59 210-279 183-241 (276)
67 KOG1002 Nucleotide excision re 92.2 0.093 2E-06 53.9 2.6 60 205-286 532-591 (791)
68 KOG4265 Predicted E3 ubiquitin 91.9 0.13 2.8E-06 50.2 3.0 69 189-284 268-339 (349)
69 KOG0417 Ubiquitin-protein liga 91.6 1.2 2.6E-05 38.8 8.2 82 18-99 5-110 (148)
70 KOG3002 Zn finger protein [Gen 90.7 0.14 3E-06 49.2 1.9 47 206-281 45-91 (299)
71 PF14446 Prok-RING_1: Prokaryo 89.8 0.31 6.7E-06 35.6 2.6 48 208-282 4-53 (54)
72 KOG0311 Predicted E3 ubiquitin 89.5 0.078 1.7E-06 51.9 -0.9 51 208-283 42-92 (381)
73 KOG1814 Predicted E3 ubiquitin 89.4 0.73 1.6E-05 46.1 5.7 52 210-278 185-237 (445)
74 KOG3970 Predicted E3 ubiquitin 89.1 0.35 7.6E-06 45.0 3.1 63 205-284 46-108 (299)
75 KOG1785 Tyrosine kinase negati 87.1 0.3 6.5E-06 48.8 1.5 47 210-281 370-416 (563)
76 PF12906 RINGv: RING-variant d 87.1 0.56 1.2E-05 32.9 2.4 26 242-276 19-47 (47)
77 KOG0427 Ubiquitin conjugating 86.9 5.3 0.00012 34.4 8.6 86 16-101 17-126 (161)
78 KOG0309 Conserved WD40 repeat- 85.8 0.51 1.1E-05 50.5 2.4 27 236-275 1043-1069(1081)
79 KOG0297 TNF receptor-associate 85.7 0.5 1.1E-05 46.8 2.1 52 207-284 19-70 (391)
80 PF11789 zf-Nse: Zinc-finger o 85.3 0.43 9.3E-06 34.9 1.2 46 206-275 8-53 (57)
81 KOG1940 Zn-finger protein [Gen 84.9 0.68 1.5E-05 44.1 2.6 46 210-278 159-204 (276)
82 KOG0978 E3 ubiquitin ligase in 84.8 0.46 1E-05 50.4 1.5 49 208-282 642-690 (698)
83 KOG0827 Predicted E3 ubiquitin 84.3 0.11 2.4E-06 51.4 -3.0 51 208-281 195-245 (465)
84 PHA03096 p28-like protein; Pro 83.7 0.78 1.7E-05 43.8 2.4 58 210-280 179-236 (284)
85 KOG2114 Vacuolar assembly/sort 83.4 0.54 1.2E-05 50.7 1.3 41 210-279 841-881 (933)
86 PF10367 Vps39_2: Vacuolar sor 81.8 0.54 1.2E-05 36.8 0.5 32 208-253 77-108 (109)
87 KOG0418 Ubiquitin-protein liga 81.7 8.7 0.00019 34.9 8.1 57 16-72 5-74 (200)
88 KOG4159 Predicted E3 ubiquitin 81.6 0.97 2.1E-05 45.1 2.3 47 208-281 83-129 (398)
89 KOG4185 Predicted E3 ubiquitin 80.8 1.4 3E-05 41.2 2.9 51 210-280 4-54 (296)
90 KOG4275 Predicted E3 ubiquitin 80.8 0.47 1E-05 45.7 -0.2 87 164-280 253-341 (350)
91 COG5183 SSM4 Protein involved 80.7 1.4 3E-05 47.7 3.1 55 208-283 11-68 (1175)
92 KOG3899 Uncharacterized conser 80.1 6.9 0.00015 37.9 7.3 46 237-282 319-366 (381)
93 KOG1813 Predicted E3 ubiquitin 77.0 1.2 2.5E-05 42.9 1.2 51 208-285 240-290 (313)
94 KOG3053 Uncharacterized conser 76.4 2 4.4E-05 40.7 2.6 66 205-282 16-83 (293)
95 KOG4718 Non-SMC (structural ma 76.2 1.6 3.4E-05 40.3 1.8 50 208-283 180-229 (235)
96 KOG0420 Ubiquitin-protein liga 75.9 10 0.00022 34.0 6.6 54 40-93 61-132 (184)
97 KOG0422 Ubiquitin-protein liga 74.0 16 0.00034 31.9 7.1 83 17-99 5-112 (153)
98 PF05743 UEV: UEV domain; Int 73.4 4.6 0.0001 33.6 3.7 45 54-98 51-114 (121)
99 PF05773 RWD: RWD domain; Int 73.0 7.5 0.00016 30.2 4.7 40 37-76 28-74 (113)
100 KOG0896 Ubiquitin-conjugating 72.1 4.8 0.0001 34.6 3.6 55 108-162 10-81 (138)
101 KOG0825 PHD Zn-finger protein 71.9 2.9 6.2E-05 45.2 2.6 59 208-280 95-153 (1134)
102 smart00591 RWD domain in RING 71.1 39 0.00084 25.9 8.4 21 53-73 43-63 (107)
103 KOG2660 Locus-specific chromos 70.4 1.5 3.3E-05 42.6 0.2 48 208-281 14-61 (331)
104 KOG0424 Ubiquitin-protein liga 69.9 11 0.00023 33.1 5.2 50 50-100 55-121 (158)
105 COG5152 Uncharacterized conser 68.3 3.4 7.4E-05 38.0 2.0 50 205-281 192-241 (259)
106 KOG2879 Predicted E3 ubiquitin 65.7 8.9 0.00019 36.8 4.3 51 207-281 237-287 (298)
107 KOG0802 E3 ubiquitin ligase [P 63.1 4.6 9.9E-05 41.6 2.0 45 207-282 477-521 (543)
108 PF13832 zf-HC5HC2H_2: PHD-zin 62.9 5.9 0.00013 31.6 2.3 34 208-254 54-87 (110)
109 PF07800 DUF1644: Protein of u 62.6 11 0.00024 33.4 4.0 66 209-281 2-91 (162)
110 KOG4692 Predicted E3 ubiquitin 60.4 7 0.00015 38.8 2.6 48 208-282 421-468 (489)
111 COG1996 RPC10 DNA-directed RNA 56.5 4.4 9.5E-05 29.1 0.4 34 235-285 6-39 (49)
112 PF14570 zf-RING_4: RING/Ubox 55.4 13 0.00028 26.6 2.6 47 212-280 1-47 (48)
113 PF00628 PHD: PHD-finger; Int 55.3 5.4 0.00012 27.4 0.7 30 212-254 2-31 (51)
114 PF13717 zinc_ribbon_4: zinc-r 55.2 7.6 0.00017 25.7 1.4 34 210-248 3-36 (36)
115 PF04423 Rad50_zn_hook: Rad50 55.2 5.9 0.00013 28.1 0.9 25 250-281 7-31 (54)
116 PF13670 PepSY_2: Peptidase pr 54.6 56 0.0012 24.8 6.4 45 16-61 31-76 (83)
117 PF13719 zinc_ribbon_5: zinc-r 53.7 7.4 0.00016 25.8 1.1 34 210-248 3-36 (37)
118 COG5175 MOT2 Transcriptional r 52.3 13 0.00028 36.9 2.9 52 207-280 12-63 (480)
119 KOG0677 Actin-related protein 49.8 11 0.00023 36.5 1.9 45 14-58 309-354 (389)
120 PF11023 DUF2614: Protein of u 48.9 12 0.00026 31.3 1.9 35 233-286 67-101 (114)
121 KOG1829 Uncharacterized conser 48.5 7 0.00015 40.9 0.6 17 236-254 532-548 (580)
122 KOG0416 Ubiquitin-protein liga 47.4 28 0.00062 31.2 4.1 40 32-71 23-67 (189)
123 KOG0419 Ubiquitin-protein liga 46.8 48 0.001 28.7 5.2 85 15-99 5-113 (152)
124 smart00249 PHD PHD zinc finger 44.7 14 0.0003 23.9 1.4 17 235-253 14-30 (47)
125 KOG0421 Ubiquitin-protein liga 44.1 41 0.00088 29.5 4.4 27 50-76 75-101 (175)
126 KOG0269 WD40 repeat-containing 43.1 18 0.00039 39.1 2.5 31 236-279 794-826 (839)
127 PF06750 DiS_P_DiS: Bacterial 40.8 21 0.00045 28.4 2.0 37 234-283 32-71 (92)
128 PF13771 zf-HC5HC2H: PHD-like 40.4 16 0.00035 27.9 1.3 32 210-254 37-68 (90)
129 KOG0956 PHD finger protein AF1 39.4 15 0.00032 39.5 1.2 42 206-253 114-155 (900)
130 KOG3821 Heparin sulfate cell s 37.6 67 0.0014 33.7 5.6 78 81-173 370-460 (563)
131 PF04710 Pellino: Pellino; In 37.5 11 0.00024 37.8 0.0 70 208-282 327-402 (416)
132 PF13901 DUF4206: Domain of un 37.0 13 0.00028 33.5 0.4 25 236-278 173-197 (202)
133 PF14255 Cys_rich_CPXG: Cystei 36.6 15 0.00033 26.5 0.6 13 272-284 2-14 (52)
134 PF04641 Rtf2: Rtf2 RING-finge 36.6 26 0.00056 32.6 2.3 121 130-282 28-162 (260)
135 KOG3039 Uncharacterized conser 36.5 29 0.00063 33.0 2.6 53 208-283 220-272 (303)
136 smart00132 LIM Zinc-binding do 35.8 14 0.0003 23.1 0.3 19 244-281 20-38 (39)
137 KOG2817 Predicted E3 ubiquitin 35.6 29 0.00064 34.7 2.6 30 241-278 353-382 (394)
138 PF14311 DUF4379: Domain of un 35.1 24 0.00053 24.9 1.5 7 270-276 49-55 (55)
139 COG3975 Predicted protease wit 34.2 52 0.0011 34.4 4.1 84 42-139 2-86 (558)
140 PF15353 HECA: Headcase protei 34.1 29 0.00063 28.8 1.9 25 235-259 30-56 (107)
141 COG5236 Uncharacterized conser 33.7 41 0.00088 33.6 3.2 52 204-280 56-107 (493)
142 PF05290 Baculo_IE-1: Baculovi 32.8 59 0.0013 28.1 3.7 54 208-283 79-134 (140)
143 KOG2068 MOT2 transcription fac 32.7 43 0.00094 32.8 3.2 54 208-284 248-301 (327)
144 COG0721 GatC Asp-tRNAAsn/Glu-t 32.5 86 0.0019 25.2 4.4 26 90-115 22-47 (96)
145 KOG1571 Predicted E3 ubiquitin 32.4 21 0.00046 35.3 1.0 48 207-284 303-350 (355)
146 KOG0423 Ubiquitin-protein liga 32.2 40 0.00086 30.4 2.6 63 7-69 3-75 (223)
147 COG4357 Zinc finger domain con 31.7 33 0.00071 28.1 1.8 12 271-282 81-92 (105)
148 PF14461 Prok-E2_B: Prokaryoti 31.5 1E+02 0.0023 25.6 5.0 52 49-100 34-105 (133)
149 KOG1609 Protein involved in mR 31.0 38 0.00082 31.3 2.4 58 208-281 77-134 (323)
150 PF10571 UPF0547: Uncharacteri 30.4 31 0.00067 21.4 1.2 23 211-247 2-24 (26)
151 KOG4323 Polycomb-like PHD Zn-f 29.9 29 0.00062 35.5 1.5 36 208-254 167-202 (464)
152 KOG0803 Predicted E3 ubiquitin 29.6 11 0.00025 42.9 -1.5 61 205-283 1057-1117(1312)
153 KOG1538 Uncharacterized conser 28.6 26 0.00056 37.8 0.9 30 237-279 1046-1075(1081)
154 PF14169 YdjO: Cold-inducible 28.3 30 0.00065 25.7 1.0 34 234-281 17-50 (59)
155 PF13467 RHH_4: Ribbon-helix-h 27.8 37 0.0008 25.7 1.5 12 103-114 20-31 (67)
156 PF15225 IL32: Interleukin 32 27.6 92 0.002 25.3 3.7 29 81-109 32-61 (104)
157 KOG1812 Predicted E3 ubiquitin 27.2 37 0.0008 33.7 1.7 51 208-275 145-195 (384)
158 KOG1001 Helicase-like transcri 27.0 25 0.00055 37.5 0.6 47 210-282 455-501 (674)
159 KOG0826 Predicted E3 ubiquitin 26.8 51 0.0011 32.5 2.5 68 189-282 273-347 (357)
160 COG1545 Predicted nucleic-acid 25.4 30 0.00065 29.5 0.7 30 230-280 24-53 (140)
161 PF09538 FYDLN_acid: Protein o 25.3 53 0.0011 27.1 2.1 31 235-283 9-39 (108)
162 KOG3842 Adaptor protein Pellin 24.1 91 0.002 30.8 3.7 70 208-282 340-415 (429)
163 PHA03050 glutaredoxin; Provisi 24.1 29 0.00063 28.1 0.3 25 254-278 4-28 (108)
164 KOG0426 Ubiquitin-protein liga 24.0 1.1E+02 0.0023 26.6 3.7 22 50-71 51-72 (165)
165 KOG0895 Ubiquitin-conjugating 23.8 64 0.0014 36.3 2.9 70 38-107 880-977 (1101)
166 KOG0897 Predicted ubiquitin-co 23.7 1.7E+02 0.0037 24.8 4.7 72 50-121 9-118 (122)
167 TIGR00293 prefoldin, archaeal 23.1 3.1E+02 0.0066 22.2 6.3 22 127-148 46-67 (126)
168 KOG4443 Putative transcription 23.1 39 0.00085 36.0 1.1 39 237-283 37-75 (694)
169 PF07559 FlaE: Flagellar basal 23.0 98 0.0021 24.9 3.3 22 40-61 12-33 (130)
170 COG5242 TFB4 RNA polymerase II 22.5 1.6E+02 0.0035 27.9 4.8 29 86-114 95-124 (296)
171 PF14801 GCD14_N: tRNA methylt 22.0 1.1E+02 0.0023 22.6 2.8 18 42-59 11-28 (54)
172 PF02996 Prefoldin: Prefoldin 21.7 4.1E+02 0.0089 21.0 7.6 50 87-146 7-56 (120)
173 PF04606 Ogr_Delta: Ogr/Delta- 21.4 44 0.00095 23.1 0.7 11 237-247 27-37 (47)
174 PRK00398 rpoP DNA-directed RNA 20.8 39 0.00085 23.1 0.4 16 270-285 21-36 (46)
175 PF05810 NinF: NinF protein; 20.4 72 0.0016 23.7 1.7 14 249-262 36-50 (58)
No 1
>KOG3268 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.2e-67 Score=456.22 Aligned_cols=233 Identities=34% Similarity=0.579 Sum_probs=228.7
Q ss_pred EeCCCCEEEEEEEeCCCCCCCCCCccccCCCccccccCccccHHHHHHHHHHHHHHHHHHHHhHHhhhccceeecCCCCC
Q 022965 46 IDKKGRVHCMEIQLDKNYPRSPPSISADVPYIFNLKWSRKSRLKDLLQQFREHLEKLQEIWNILDEIDKSLWVIDLKNPS 125 (289)
Q Consensus 46 ~D~~~R~H~l~i~l~~~yp~~~P~~~~dlP~~f~l~w~~~s~L~~i~~qF~~~le~lq~fwd~ldeID~~~wVleP~~P~ 125 (289)
.|++||.|.+++++..+||++.|.-.+|.|++|-..|.|+|++..||+||.+++|+++.||+.||++|++|||+||++|.
T Consensus 2 edaSG~~h~i~l~~ea~~pae~pd~fvd~pi~FCad~~pqs~~IsiYsqflaa~esiea~~~~ide~deKT~l~e~ekP~ 81 (234)
T KOG3268|consen 2 EDASGECHGIELCEEAAKPAEFPDKFVDEPINFCADVGPQSCAISIYSQFLAAFESIEACNAPIDEGDEKTLLHELEKPA 81 (234)
T ss_pred CCcccchhHHHHHHHhcCccccchhhhcccccceeecCCcceehHHHHHHHHHHHhHHhhcCcCccccccchhccccCCc
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCceeEEEEeCCceEEEEEEeCCCCCCCCceEEecCchhhhHHHHHhhhcccccCCCCchHHHHHHHhcccCCCCCCCcC
Q 022965 126 RANVCRQINLGYNCIIMLSIHIDDPSSLPECRFMGSDPMVNSLRKTWQRNSKRWNKDKPFVENVANLLETQLPRPPEHEN 205 (289)
Q Consensus 126 ~~~~~RrI~l~~~~sl~i~vdp~~P~~lP~~~flG~~~~v~~lr~~l~~n~~~Wd~~~~i~~NL~~il~~~~P~~~~~~~ 205 (289)
|+.+.|||++||+|+|.|+|||+||.|||+|.|+|+++++.++.-+...|++.|+|..+.+||++..+++.||..+-.++
T Consensus 82 RaaaaRRIa~GNd~~I~ieiD~k~PkmLPEcf~lgadhv~~P~gie~~~~i~L~dPe~~~led~kd~lE~df~a~a~Lek 161 (234)
T KOG3268|consen 82 RAAAARRIAAGNDCIIIIEIDFKDPKMLPECFELGADHVSFPEGIECILGIELPDPEGLQLEDDKDQLECDFCAAAFLEK 161 (234)
T ss_pred hHHHHHHhhcCCceEEEEEecCCCCccchhhHhhccccccccccceEEeccccCCccccccccccceeeeCccHHHhcCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcccccccccccccchhhccccCCCCCcccccCCCCCCcchhhHHHHHHhhhccCccccccccCCCCCCCcccccccc
Q 022965 206 NYQQVECGICYAQFLPIDEELGAKSGGGTDYTCDNSSCSKAFHSVCLGDWLRSITTTRQSYDVLFGNCPYCSEPVAVKIS 285 (289)
Q Consensus 206 ~~~~~eC~ICy~~~l~~d~~~~~~~g~~Pd~~C~n~~C~h~FH~~CL~eWL~~l~~~r~sF~~i~g~CP~Cr~~i~~~~~ 285 (289)
+++...|||||.|.+ +|++||++|+|.+||+.||+-||++|||++.++||||+++||+||||++||++||+
T Consensus 162 dd~~~~cgicyayql---------dGTipDqtCdN~qCgkpFHqiCL~dWLRgilTsRQSFdiiFGeCPYCS~PialKmS 232 (234)
T KOG3268|consen 162 DDELGACGICYAYQL---------DGTIPDQTCDNIQCGKPFHQICLTDWLRGILTSRQSFDIIFGECPYCSDPIALKMS 232 (234)
T ss_pred chhhhcccceeeeec---------CCccccccccccccCCcHHHHHHHHHHHHHhhccceeeeeeccCCCCCCcceeecc
Confidence 999999999999988 79999999999999999999999999999999999999999999999999999998
Q ss_pred cc
Q 022965 286 IA 287 (289)
Q Consensus 286 ~~ 287 (289)
.+
T Consensus 233 gk 234 (234)
T KOG3268|consen 233 GK 234 (234)
T ss_pred CC
Confidence 64
No 2
>PF09765 WD-3: WD-repeat region; InterPro: IPR019162 This entry represents a region of approximately 100 residues containing three WD repeats and six cysteine residues- possibly as three cysteine-bridges associated with FancL. FancL is the ubiquitin ligase protein that mediates ubiquitination of FancD2, a key step in the DNA damage pathway [, ]. FancL belongs to the multisubunit Fanconi anemia (FA) complex, which is composed of subunits: FancA, FancB, FancC, FancE, FancF, FancG, FancL/PHF9 and FancM. The WD repeats are required for interaction of FancL with other subunits of the FA complex []. In humans defects in FancL are a cause of Fanconi anemia (FA) [MIM:227650], and the FA complex is not found in FA patients. FA is a genetically heterogeneous, autosomal recessive disorder characterised by progressive pancytopenia, a diverse assortment of congenital malformations, and a predisposition to the development of malignancies. At the cellular level it is associated with hypersensitivity to DNA-damaging agents, chromosomal instability (increased chromosome breakage), and defective DNA repair.; PDB: 3ZQS_B 3K1L_A.
Probab=100.00 E-value=6e-64 Score=470.15 Aligned_cols=188 Identities=41% Similarity=0.852 Sum_probs=163.8
Q ss_pred ChhHHHHHHHHHHHhccceeeee--cCCcceEEEEEEeCCCCEEEEEEEeCCCCCCCCCCccccCCCccccccCc-cccH
Q 022965 12 SSSFSRSVYSEIEEVGWEHLVRL--SEDLKFLSFRVIDKKGRVHCMEIQLDKNYPRSPPSISADVPYIFNLKWSR-KSRL 88 (289)
Q Consensus 12 ~~~~y~~l~~Ei~~igw~~l~~i--d~~l~~i~l~~~D~~~R~H~l~i~l~~~yp~~~P~~~~dlP~~f~l~w~~-~s~L 88 (289)
|++||++|++||++|||++++++ |++|++|+|+++|++ |+|+|+|+++++||.++|+|++|+|++|.+.|++ +|+|
T Consensus 97 p~~~ys~ll~EIe~IGW~kl~~i~~d~~ls~i~l~~~D~~-R~H~l~l~l~~~yp~~~p~~~~~~P~~~~~~w~~~~ssL 175 (291)
T PF09765_consen 97 PPQYYSNLLKEIEAIGWDKLVQIQFDDDLSTIKLKIFDSS-RQHYLELKLPSNYPFEPPSCSLDLPIPFSLSWSPSQSSL 175 (291)
T ss_dssp --GGC-CHHHHHHHHHCGCCEEEEE-CCCSEEEEEEETTC-EEEEEEEETTTTTTTSEEEECS-TTS-HHHHHHCHT-SH
T ss_pred CcHHHHHHHHHHHHhccccceEEecCCCccEEEEEEEcCC-ceEEEEEEECCCCCCCCceeeCCCCcchhhhhcccccCH
Confidence 49999999999999999999999 999999999999999 9999999999999999999999999999999999 8999
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHhhhccceeecCCCCCCCceeEEEEeCCceEEEEEEeCCCCCCCCceE---EecCchhh
Q 022965 89 KDLLQQFREHLEKLQEIWNILDEIDKSLWVIDLKNPSRANVCRQINLGYNCIIMLSIHIDDPSSLPECR---FMGSDPMV 165 (289)
Q Consensus 89 ~~i~~qF~~~le~lq~fwd~ldeID~~~wVleP~~P~~~~~~RrI~l~~~~sl~i~vdp~~P~~lP~~~---flG~~~~v 165 (289)
.++++||+++||+||+|||+|||||++||||||++|+||+++||||||+||||+|+|||++|+|+|++. |+|++++|
T Consensus 176 ~~v~~qF~~~le~lq~fw~~ld~iD~~~~VleP~~p~~~~~~RrI~l~~~~sl~i~vdP~~P~~~p~~~~l~f~G~~~~v 255 (291)
T PF09765_consen 176 KDVVQQFQEALESLQEFWDVLDEIDENCWVLEPEKPTRSDTYRRIALGNNVSLKIEVDPRHPRMLPECRFLGFIGPDHEV 255 (291)
T ss_dssp HHHHHHHHHHHHHTHHHHHHHHHHHHHS-EEESSS--TT--EEEEEEETTEEEEEEE-TTSTTSTTCCEEECEESSHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhcceecCCCCCCccccEEEEEECCceEEEEEEcCCCCccCcccccccccCCHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999866 55599999
Q ss_pred hHHHHHhhhcccccCCCCchHHHHHHHhcc-cCCCC
Q 022965 166 NSLRKTWQRNSKRWNKDKPFVENVANLLET-QLPRP 200 (289)
Q Consensus 166 ~~lr~~l~~n~~~Wd~~~~i~~NL~~il~~-~~P~~ 200 (289)
++||++|++|+++||+++++++||+++||+ +||+|
T Consensus 256 ~~lr~~~~~n~~~Wd~~~~~~~NL~~il~~~~fP~p 291 (291)
T PF09765_consen 256 NPLREKLNDNLHNWDPDKSLLENLERILEICEFPSP 291 (291)
T ss_dssp HHHHHHHHHHHHC--TTS-HHHHHHHHCT-SS----
T ss_pred HHHHHHHhcchhhcCCCCCHHHHHHHHhCcccCCCC
Confidence 999999999999999999999999999999 89986
No 3
>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.
Probab=99.86 E-value=7.5e-23 Score=155.12 Aligned_cols=69 Identities=46% Similarity=1.053 Sum_probs=41.8
Q ss_pred cccccccccccccchhhccccCCCCCcccccCCCCCCcchhhHHHHHHhhhccCccccccccCCCCCCCcccccccc
Q 022965 209 QVECGICYAQFLPIDEELGAKSGGGTDYTCDNSSCSKAFHSVCLGDWLRSITTTRQSYDVLFGNCPYCSEPVAVKIS 285 (289)
Q Consensus 209 ~~eC~ICy~~~l~~d~~~~~~~g~~Pd~~C~n~~C~h~FH~~CL~eWL~~l~~~r~sF~~i~g~CP~Cr~~i~~~~~ 285 (289)
+.+|+|||++++ +++.+|+.+|+|.+|++.||..||++||++++++|++|+.++|+||||+++|+++++
T Consensus 2 ~~~C~IC~~~~~--------~~~~~p~~~C~n~~C~~~fH~~CL~~wf~~~~~~~~~~~~~~G~CP~C~~~i~~~~~ 70 (70)
T PF11793_consen 2 ELECGICYSYRL--------DDGEIPDVVCPNPSCGKKFHLLCLSEWFLSLEKSRQSFIPIFGECPYCSSPISWSFS 70 (70)
T ss_dssp --S-SSS--SS---------TT-----B--S-TT----B-SGGGHHHHHHHHSSS-TTT--EEE-TTT-SEEEGGG-
T ss_pred CCCCCcCCcEec--------CCCCcCceEcCCcccCCHHHHHHHHHHHHHcccCCeeecccccCCcCCCCeeeEecC
Confidence 468999999986 256789999999999999999999999999999999999999999999999999874
No 4
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger
Probab=99.27 E-value=2.9e-12 Score=100.78 Aligned_cols=62 Identities=31% Similarity=0.656 Sum_probs=47.3
Q ss_pred cccccccccccccchhhccccCCCCCccccc--CCCCCCcchhhHHHHHHhhhccCccccccccCCCCCCCcccccc
Q 022965 209 QVECGICYAQFLPIDEELGAKSGGGTDYTCD--NSSCSKAFHSVCLGDWLRSITTTRQSYDVLFGNCPYCSEPVAVK 283 (289)
Q Consensus 209 ~~eC~ICy~~~l~~d~~~~~~~g~~Pd~~C~--n~~C~h~FH~~CL~eWL~~l~~~r~sF~~i~g~CP~Cr~~i~~~ 283 (289)
++.||||+..|.. ...+-..|...|. ..+|+|.||.+||++||.+.. + .+.||+||+++..|
T Consensus 21 dd~CgICr~~fdg-----~Cp~Ck~Pgd~Cplv~g~C~H~FH~hCI~kWl~~~~-~-------~~~CPmCR~~w~~k 84 (85)
T PF12861_consen 21 DDVCGICRMPFDG-----CCPDCKFPGDDCPLVWGKCSHNFHMHCILKWLSTQS-S-------KGQCPMCRQPWKFK 84 (85)
T ss_pred CCceeeEeccccc-----CCCCccCCCCCCceeeccCccHHHHHHHHHHHcccc-C-------CCCCCCcCCeeeeC
Confidence 5689999999841 0123456777773 468999999999999999832 2 58999999998765
No 5
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=99.12 E-value=1.9e-11 Score=83.93 Aligned_cols=43 Identities=35% Similarity=0.950 Sum_probs=33.1
Q ss_pred cccccccccccchhhccccCCCCCcccccCCCCCCcchhhHHHHHHhhhccCccccccccCCCCCCC
Q 022965 211 ECGICYAQFLPIDEELGAKSGGGTDYTCDNSSCSKAFHSVCLGDWLRSITTTRQSYDVLFGNCPYCS 277 (289)
Q Consensus 211 eC~ICy~~~l~~d~~~~~~~g~~Pd~~C~n~~C~h~FH~~CL~eWL~~l~~~r~sF~~i~g~CP~Cr 277 (289)
+|+||++.+.. +. .. ...+|||.||..||.+||++ .++||+||
T Consensus 2 ~C~IC~~~~~~---------~~---~~-~~l~C~H~fh~~Ci~~~~~~-----------~~~CP~CR 44 (44)
T PF13639_consen 2 ECPICLEEFED---------GE---KV-VKLPCGHVFHRSCIKEWLKR-----------NNSCPVCR 44 (44)
T ss_dssp CETTTTCBHHT---------TS---CE-EEETTSEEEEHHHHHHHHHH-----------SSB-TTTH
T ss_pred CCcCCChhhcC---------CC---eE-EEccCCCeeCHHHHHHHHHh-----------CCcCCccC
Confidence 79999999852 11 11 12559999999999999998 57999997
No 6
>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....
Probab=99.02 E-value=1.4e-10 Score=88.50 Aligned_cols=53 Identities=26% Similarity=0.673 Sum_probs=35.5
Q ss_pred cccccccccccccchhhccccCCCCCcccc--cCCCCCCcchhhHHHHHHhhhccCccccccccCCCCCCC
Q 022965 209 QVECGICYAQFLPIDEELGAKSGGGTDYTC--DNSSCSKAFHSVCLGDWLRSITTTRQSYDVLFGNCPYCS 277 (289)
Q Consensus 209 ~~eC~ICy~~~l~~d~~~~~~~g~~Pd~~C--~n~~C~h~FH~~CL~eWL~~l~~~r~sF~~i~g~CP~Cr 277 (289)
+..|+||++.+...--+-. .+...| ..+.|||.||.+||.+||+. ..+||+||
T Consensus 19 ~d~C~IC~~~l~~~~~~~~-----~~~~~~~i~~~~C~H~FH~~Ci~~Wl~~-----------~~~CP~CR 73 (73)
T PF12678_consen 19 DDNCAICREPLEDPCPECQ-----APQDECPIVWGPCGHIFHFHCISQWLKQ-----------NNTCPLCR 73 (73)
T ss_dssp CSBETTTTSBTTSTTCCHH-----HCTTTS-EEEETTSEEEEHHHHHHHHTT-----------SSB-TTSS
T ss_pred CCcccccChhhhChhhhhc-----CCccccceEecccCCCEEHHHHHHHHhc-----------CCcCCCCC
Confidence 3459999999842110000 011112 34689999999999999998 67999998
No 7
>KOG1493 consensus Anaphase-promoting complex (APC), subunit 11 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.00 E-value=7.4e-11 Score=90.98 Aligned_cols=61 Identities=31% Similarity=0.659 Sum_probs=46.9
Q ss_pred ccccccccccccchhhccccCCCCCccccc--CCCCCCcchhhHHHHHHhhhccCccccccccCCCCCCCcccccc
Q 022965 210 VECGICYAQFLPIDEELGAKSGGGTDYTCD--NSSCSKAFHSVCLGDWLRSITTTRQSYDVLFGNCPYCSEPVAVK 283 (289)
Q Consensus 210 ~eC~ICy~~~l~~d~~~~~~~g~~Pd~~C~--n~~C~h~FH~~CL~eWL~~l~~~r~sF~~i~g~CP~Cr~~i~~~ 283 (289)
+.||||...|.. -..+-.+|...|. .+.|.|.||.+||++||.+ +++ .|.||+||+...++
T Consensus 21 e~CGiCRm~Fdg-----~Cp~Ck~PgDdCPLv~G~C~h~fh~hCI~~wl~~-~ts-------q~~CPmcRq~~~~~ 83 (84)
T KOG1493|consen 21 ETCGICRMPFDG-----CCPDCKLPGDDCPLVWGYCLHAFHAHCILKWLNT-PTS-------QGQCPMCRQTWQFK 83 (84)
T ss_pred CccceEecccCC-----cCCCCcCCCCCCccHHHHHHHHHHHHHHHHHhcC-ccc-------cccCCcchheeEec
Confidence 489999999831 0012357888884 4799999999999999998 333 59999999988765
No 8
>COG5219 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=98.98 E-value=1.4e-10 Score=121.53 Aligned_cols=60 Identities=28% Similarity=0.680 Sum_probs=49.2
Q ss_pred CCCCcccccccccccccchhhccccCCCCCcccccCCCCCCcchhhHHHHHHhhhccCccccccccCCCCCCCccccc
Q 022965 205 NNYQQVECGICYAQFLPIDEELGAKSGGGTDYTCDNSSCSKAFHSVCLGDWLRSITTTRQSYDVLFGNCPYCSEPVAV 282 (289)
Q Consensus 205 ~~~~~~eC~ICy~~~l~~d~~~~~~~g~~Pd~~C~n~~C~h~FH~~CL~eWL~~l~~~r~sF~~i~g~CP~Cr~~i~~ 282 (289)
.=++.+||+|||+.... -+...|.+.| +.|.|.||..|||+|+++- . .++||.||..|+.
T Consensus 1465 ~fsG~eECaICYsvL~~-------vdr~lPskrC--~TCknKFH~~CLyKWf~Ss--~-------~s~CPlCRseitf 1524 (1525)
T COG5219 1465 KFSGHEECAICYSVLDM-------VDRSLPSKRC--ATCKNKFHTRCLYKWFASS--A-------RSNCPLCRSEITF 1524 (1525)
T ss_pred hcCCcchhhHHHHHHHH-------HhccCCcccc--chhhhhhhHHHHHHHHHhc--C-------CCCCCcccccccc
Confidence 34577899999998642 2457899999 8899999999999999982 2 4699999988764
No 9
>COG5194 APC11 Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning]
Probab=98.95 E-value=4e-10 Score=87.66 Aligned_cols=61 Identities=25% Similarity=0.514 Sum_probs=47.0
Q ss_pred ccccccccccccchhhccccCCCCCcccc--cCCCCCCcchhhHHHHHHhhhccCccccccccCCCCCCCcccccc
Q 022965 210 VECGICYAQFLPIDEELGAKSGGGTDYTC--DNSSCSKAFHSVCLGDWLRSITTTRQSYDVLFGNCPYCSEPVAVK 283 (289)
Q Consensus 210 ~eC~ICy~~~l~~d~~~~~~~g~~Pd~~C--~n~~C~h~FH~~CL~eWL~~l~~~r~sF~~i~g~CP~Cr~~i~~~ 283 (289)
..||||...+... =.....|..|+..| ..+.|+|.||.+||+.||.+ .|.||+++++..+.
T Consensus 21 d~CaICRnhim~~--C~eCq~~~~~~~eC~v~wG~CnHaFH~HCI~rWL~T-----------k~~CPld~q~w~~~ 83 (88)
T COG5194 21 DVCAICRNHIMGT--CPECQFGMTPGDECPVVWGVCNHAFHDHCIYRWLDT-----------KGVCPLDRQTWVLA 83 (88)
T ss_pred chhhhhhccccCc--CcccccCCCCCCcceEEEEecchHHHHHHHHHHHhh-----------CCCCCCCCceeEEe
Confidence 4799999988511 11122344577777 36899999999999999999 89999999987654
No 10
>PHA02929 N1R/p28-like protein; Provisional
Probab=98.86 E-value=2e-09 Score=99.31 Aligned_cols=55 Identities=25% Similarity=0.617 Sum_probs=41.0
Q ss_pred CcccccccccccccchhhccccCCCCCc-ccccCCCCCCcchhhHHHHHHhhhccCccccccccCCCCCCCccccc
Q 022965 208 QQVECGICYAQFLPIDEELGAKSGGGTD-YTCDNSSCSKAFHSVCLGDWLRSITTTRQSYDVLFGNCPYCSEPVAV 282 (289)
Q Consensus 208 ~~~eC~ICy~~~l~~d~~~~~~~g~~Pd-~~C~n~~C~h~FH~~CL~eWL~~l~~~r~sF~~i~g~CP~Cr~~i~~ 282 (289)
.+.+|+||++.+.. ..+.. .....+.|||.||..||.+|++. .++||+||.++..
T Consensus 173 ~~~eC~ICle~~~~---------~~~~~~~~~vl~~C~H~FC~~CI~~Wl~~-----------~~tCPlCR~~~~~ 228 (238)
T PHA02929 173 KDKECAICMEKVYD---------KEIKNMYFGILSNCNHVFCIECIDIWKKE-----------KNTCPVCRTPFIS 228 (238)
T ss_pred CCCCCccCCccccc---------CccccccceecCCCCCcccHHHHHHHHhc-----------CCCCCCCCCEeeE
Confidence 45799999998651 11111 11234789999999999999987 6899999998763
No 11
>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]
Probab=98.56 E-value=4.5e-08 Score=94.88 Aligned_cols=64 Identities=28% Similarity=0.612 Sum_probs=45.7
Q ss_pred CCCcccccccccc-cccchhhccccCCCCCcccccCCCCCCcchhhHHHHHHhhhccCccccccccCCCCCCCccccccc
Q 022965 206 NYQQVECGICYAQ-FLPIDEELGAKSGGGTDYTCDNSSCSKAFHSVCLGDWLRSITTTRQSYDVLFGNCPYCSEPVAVKI 284 (289)
Q Consensus 206 ~~~~~eC~ICy~~-~l~~d~~~~~~~g~~Pd~~C~n~~C~h~FH~~CL~eWL~~l~~~r~sF~~i~g~CP~Cr~~i~~~~ 284 (289)
..++..|.||+++ +.++.+.+.......|. ...|||.||-+||+-|+++ ..+||.||.|+-..+
T Consensus 284 ~n~D~~C~ICmde~~h~~~~~~~~~~~~~pK----rLpCGHilHl~CLknW~ER-----------qQTCPICr~p~ifd~ 348 (491)
T COG5243 284 TNSDRTCTICMDEMFHPDHEPLPRGLDMTPK----RLPCGHILHLHCLKNWLER-----------QQTCPICRRPVIFDQ 348 (491)
T ss_pred cCCCCeEEEecccccCCCCccCcccccCCcc----cccccceeeHHHHHHHHHh-----------ccCCCcccCcccccc
Confidence 3466789999999 44322222222223343 3899999999999999999 689999999965443
No 12
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.54 E-value=3.5e-08 Score=95.27 Aligned_cols=48 Identities=33% Similarity=0.764 Sum_probs=37.7
Q ss_pred ccccccccccccchhhccccCCCCCcccccCCCCCCcchhhHHHHHHhhhccCccccccccCCCCCCCccc
Q 022965 210 VECGICYAQFLPIDEELGAKSGGGTDYTCDNSSCSKAFHSVCLGDWLRSITTTRQSYDVLFGNCPYCSEPV 280 (289)
Q Consensus 210 ~eC~ICy~~~l~~d~~~~~~~g~~Pd~~C~n~~C~h~FH~~CL~eWL~~l~~~r~sF~~i~g~CP~Cr~~i 280 (289)
..|+||++.|..+| ++ .-+.|+|.||..||..||.. .| ..||.|++.+
T Consensus 230 ~~CaIClEdY~~Gd------------kl-RiLPC~H~FH~~CIDpWL~~---~r-------~~CPvCK~di 277 (348)
T KOG4628|consen 230 DTCAICLEDYEKGD------------KL-RILPCSHKFHVNCIDPWLTQ---TR-------TFCPVCKRDI 277 (348)
T ss_pred ceEEEeecccccCC------------ee-eEecCCCchhhccchhhHhh---cC-------ccCCCCCCcC
Confidence 69999999996322 11 23889999999999999988 12 3599999965
No 13
>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.46 E-value=7.9e-08 Score=91.14 Aligned_cols=53 Identities=30% Similarity=0.746 Sum_probs=41.5
Q ss_pred CCCcccccccccccccchhhccccCCCCCcccccCCCCCCcchhhHHHHHHhhhccCccccccccCCCCCCCcccc
Q 022965 206 NYQQVECGICYAQFLPIDEELGAKSGGGTDYTCDNSSCSKAFHSVCLGDWLRSITTTRQSYDVLFGNCPYCSEPVA 281 (289)
Q Consensus 206 ~~~~~eC~ICy~~~l~~d~~~~~~~g~~Pd~~C~n~~C~h~FH~~CL~eWL~~l~~~r~sF~~i~g~CP~Cr~~i~ 281 (289)
.++..||+||++.+.-+| + -.-++|.|.||..||.+|+-.- ...||.||.++.
T Consensus 320 a~~GveCaICms~fiK~d------------~-~~vlPC~H~FH~~Cv~kW~~~y----------~~~CPvCrt~iP 372 (374)
T COG5540 320 ADKGVECAICMSNFIKND------------R-LRVLPCDHRFHVGCVDKWLLGY----------SNKCPVCRTAIP 372 (374)
T ss_pred cCCCceEEEEhhhhcccc------------e-EEEeccCceechhHHHHHHhhh----------cccCCccCCCCC
Confidence 346689999999985211 1 2338999999999999999852 579999999875
No 14
>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional
Probab=98.40 E-value=2.8e-07 Score=82.66 Aligned_cols=61 Identities=23% Similarity=0.509 Sum_probs=42.7
Q ss_pred CCcccccccccccccchhhccccCCCCCcccccCCCCCCcchhhHHHHHHhhhccCcccc-----ccccCCCCCCCcccc
Q 022965 207 YQQVECGICYAQFLPIDEELGAKSGGGTDYTCDNSSCSKAFHSVCLGDWLRSITTTRQSY-----DVLFGNCPYCSEPVA 281 (289)
Q Consensus 207 ~~~~eC~ICy~~~l~~d~~~~~~~g~~Pd~~C~n~~C~h~FH~~CL~eWL~~l~~~r~sF-----~~i~g~CP~Cr~~i~ 281 (289)
.+..+|+||++.+. + | +. +.|||.|...||.+|+....++++.. ..-...||.||++++
T Consensus 16 ~~~~~CpICld~~~---------d---P--Vv--T~CGH~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is 79 (193)
T PLN03208 16 GGDFDCNICLDQVR---------D---P--VV--TLCGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVS 79 (193)
T ss_pred CCccCCccCCCcCC---------C---c--EE--cCCCchhHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCC
Confidence 35679999999763 1 2 22 68999999999999997533222211 112468999999987
Q ss_pred cc
Q 022965 282 VK 283 (289)
Q Consensus 282 ~~ 283 (289)
..
T Consensus 80 ~~ 81 (193)
T PLN03208 80 EA 81 (193)
T ss_pred hh
Confidence 54
No 15
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)
Probab=98.36 E-value=3.3e-07 Score=60.59 Aligned_cols=45 Identities=36% Similarity=0.919 Sum_probs=34.0
Q ss_pred cccccccccccchhhccccCCCCCcccccCCCCCCcchhhHHHHHHhhhccCccccccccCCCCCCCccc
Q 022965 211 ECGICYAQFLPIDEELGAKSGGGTDYTCDNSSCSKAFHSVCLGDWLRSITTTRQSYDVLFGNCPYCSEPV 280 (289)
Q Consensus 211 eC~ICy~~~l~~d~~~~~~~g~~Pd~~C~n~~C~h~FH~~CL~eWL~~l~~~r~sF~~i~g~CP~Cr~~i 280 (289)
+|+||++.+. + ......|||.||..|+.+|++. . ...||.|++.+
T Consensus 1 ~C~iC~~~~~---~------------~~~~~~C~H~~c~~C~~~~~~~---~-------~~~Cp~C~~~~ 45 (45)
T cd00162 1 ECPICLEEFR---E------------PVVLLPCGHVFCRSCIDKWLKS---G-------KNTCPLCRTPI 45 (45)
T ss_pred CCCcCchhhh---C------------ceEecCCCChhcHHHHHHHHHh---C-------cCCCCCCCCcC
Confidence 5999998762 0 1112569999999999999986 1 46899999864
No 16
>PHA02926 zinc finger-like protein; Provisional
Probab=98.29 E-value=7e-07 Score=81.70 Aligned_cols=62 Identities=27% Similarity=0.550 Sum_probs=40.7
Q ss_pred CcccccccccccccchhhccccCCCCCcccccCCCCCCcchhhHHHHHHhhhccCccccccccCCCCCCCcccc
Q 022965 208 QQVECGICYAQFLPIDEELGAKSGGGTDYTCDNSSCSKAFHSVCLGDWLRSITTTRQSYDVLFGNCPYCSEPVA 281 (289)
Q Consensus 208 ~~~eC~ICy~~~l~~d~~~~~~~g~~Pd~~C~n~~C~h~FH~~CL~eWL~~l~~~r~sF~~i~g~CP~Cr~~i~ 281 (289)
.+.+||||++....- ... +.... -..+.|+|.|...||.+|-++-.+ ..+...||.||..+.
T Consensus 169 kE~eCgICmE~I~eK--~~~--~eRrF---GIL~~CnHsFCl~CIr~Wr~~r~~-----~~~~rsCPiCR~~f~ 230 (242)
T PHA02926 169 KEKECGICYEVVYSK--RLE--NDRYF---GLLDSCNHIFCITCINIWHRTRRE-----TGASDNCPICRTRFR 230 (242)
T ss_pred CCCCCccCccccccc--ccc--ccccc---cccCCCCchHHHHHHHHHHHhccc-----cCcCCcCCCCcceee
Confidence 457999999976410 000 00001 124789999999999999986221 122568999999865
No 17
>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A ....
Probab=98.15 E-value=1.3e-06 Score=61.46 Aligned_cols=46 Identities=28% Similarity=0.671 Sum_probs=36.0
Q ss_pred cccccccccccccchhhccccCCCCCcccccCCCCCCc-chhhHHHHHHhhhccCccccccccCCCCCCCcccc
Q 022965 209 QVECGICYAQFLPIDEELGAKSGGGTDYTCDNSSCSKA-FHSVCLGDWLRSITTTRQSYDVLFGNCPYCSEPVA 281 (289)
Q Consensus 209 ~~eC~ICy~~~l~~d~~~~~~~g~~Pd~~C~n~~C~h~-FH~~CL~eWL~~l~~~r~sF~~i~g~CP~Cr~~i~ 281 (289)
+..|.||++... +. ...+|||. |-..|+.+|+++ ...||+||++|+
T Consensus 2 ~~~C~iC~~~~~--------------~~--~~~pCgH~~~C~~C~~~~~~~-----------~~~CP~Cr~~i~ 48 (50)
T PF13920_consen 2 DEECPICFENPR--------------DV--VLLPCGHLCFCEECAERLLKR-----------KKKCPICRQPIE 48 (50)
T ss_dssp HSB-TTTSSSBS--------------SE--EEETTCEEEEEHHHHHHHHHT-----------TSBBTTTTBB-S
T ss_pred cCCCccCCccCC--------------ce--EEeCCCChHHHHHHhHHhccc-----------CCCCCcCChhhc
Confidence 458999999742 11 23689999 999999999996 789999999985
No 18
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.12 E-value=1.4e-06 Score=88.69 Aligned_cols=53 Identities=23% Similarity=0.573 Sum_probs=40.5
Q ss_pred CCCcccccccccccccchhhccccCCCCCcccccCCCCCCcchhhHHHHHHhhhccCccccccccCCCCCCCccc
Q 022965 206 NYQQVECGICYAQFLPIDEELGAKSGGGTDYTCDNSSCSKAFHSVCLGDWLRSITTTRQSYDVLFGNCPYCSEPV 280 (289)
Q Consensus 206 ~~~~~eC~ICy~~~l~~d~~~~~~~g~~Pd~~C~n~~C~h~FH~~CL~eWL~~l~~~r~sF~~i~g~CP~Cr~~i 280 (289)
......|.||.+....+ ....| ....|||.||..||++||++ ..+||.||..+
T Consensus 288 ~~~~~~C~IC~e~l~~~-------~~~~~----~rL~C~Hifh~~CL~~W~er-----------~qtCP~CR~~~ 340 (543)
T KOG0802|consen 288 ALSDELCIICLEELHSG-------HNITP----KRLPCGHIFHDSCLRSWFER-----------QQTCPTCRTVL 340 (543)
T ss_pred hhcCCeeeeechhhccc-------ccccc----ceeecccchHHHHHHHHHHH-----------hCcCCcchhhh
Confidence 34578999999987511 01112 23789999999999999999 68999999844
No 19
>KOG2930 consensus SCF ubiquitin ligase, Rbx1 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.12 E-value=1.2e-06 Score=71.47 Aligned_cols=61 Identities=23% Similarity=0.563 Sum_probs=43.0
Q ss_pred cccccccccccccchhhcccc-CCCCCcccc--cCCCCCCcchhhHHHHHHhhhccCccccccccCCCCCCCccccc
Q 022965 209 QVECGICYAQFLPIDEELGAK-SGGGTDYTC--DNSSCSKAFHSVCLGDWLRSITTTRQSYDVLFGNCPYCSEPVAV 282 (289)
Q Consensus 209 ~~eC~ICy~~~l~~d~~~~~~-~g~~Pd~~C--~n~~C~h~FH~~CL~eWL~~l~~~r~sF~~i~g~CP~Cr~~i~~ 282 (289)
...|+||..++.. .=.... +...+..-| ..+-|+|.||-+||..||++ ...||+|.++..+
T Consensus 46 vDnCAICRnHIMd--~CieCQa~~~~~~~EC~VaWG~CNHaFH~hCisrWlkt-----------r~vCPLdn~eW~~ 109 (114)
T KOG2930|consen 46 VDNCAICRNHIMD--LCIECQANQSATSEECTVAWGVCNHAFHFHCISRWLKT-----------RNVCPLDNKEWVF 109 (114)
T ss_pred echhHHHHHHHHH--HHHhhccCCCCCCCceEEEeeecchHHHHHHHHHHHhh-----------cCcCCCcCcceeE
Confidence 4579999998752 100000 112234445 46889999999999999999 7899999987654
No 20
>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A.
Probab=98.04 E-value=3e-06 Score=56.71 Aligned_cols=39 Identities=26% Similarity=0.767 Sum_probs=30.0
Q ss_pred ccccccccccchhhccccCCCCCcccccCCCCCCcchhhHHHHHHhhhccCccccccccCCCCCC
Q 022965 212 CGICYAQFLPIDEELGAKSGGGTDYTCDNSSCSKAFHSVCLGDWLRSITTTRQSYDVLFGNCPYC 276 (289)
Q Consensus 212 C~ICy~~~l~~d~~~~~~~g~~Pd~~C~n~~C~h~FH~~CL~eWL~~l~~~r~sF~~i~g~CP~C 276 (289)
|+||++.+. + |- + ..+|||.|...|+.+|++. ...||.|
T Consensus 1 C~iC~~~~~---------~---~~-~--~~~CGH~fC~~C~~~~~~~-----------~~~CP~C 39 (39)
T PF13923_consen 1 CPICLDELR---------D---PV-V--VTPCGHSFCKECIEKYLEK-----------NPKCPVC 39 (39)
T ss_dssp ETTTTSB-S---------S---EE-E--ECTTSEEEEHHHHHHHHHC-----------TSB-TTT
T ss_pred CCCCCCccc---------C---cC-E--ECCCCCchhHHHHHHHHHC-----------cCCCcCC
Confidence 899999763 1 21 1 2789999999999999998 5799998
No 21
>smart00184 RING Ring finger. E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)
Probab=97.97 E-value=5.8e-06 Score=52.60 Aligned_cols=26 Identities=35% Similarity=1.017 Sum_probs=22.2
Q ss_pred CCCCCcchhhHHHHHHhhhccCccccccccCCCCCC
Q 022965 241 SSCSKAFHSVCLGDWLRSITTTRQSYDVLFGNCPYC 276 (289)
Q Consensus 241 ~~C~h~FH~~CL~eWL~~l~~~r~sF~~i~g~CP~C 276 (289)
..|||.||..|+.+|++. . .+.||.|
T Consensus 14 ~~C~H~~c~~C~~~~~~~---~-------~~~CP~C 39 (39)
T smart00184 14 LPCGHTFCRSCIRKWLKS---G-------NNTCPIC 39 (39)
T ss_pred ecCCChHHHHHHHHHHHh---C-------cCCCCCC
Confidence 679999999999999982 1 4689987
No 22
>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.95 E-value=3.9e-06 Score=81.94 Aligned_cols=53 Identities=36% Similarity=0.825 Sum_probs=40.4
Q ss_pred CcccccccccccccchhhccccCCCCCcccccCCCCCCcchhhHHHHHHhhhccCccccccccCCCCCCCccc
Q 022965 208 QQVECGICYAQFLPIDEELGAKSGGGTDYTCDNSSCSKAFHSVCLGDWLRSITTTRQSYDVLFGNCPYCSEPV 280 (289)
Q Consensus 208 ~~~eC~ICy~~~l~~d~~~~~~~g~~Pd~~C~n~~C~h~FH~~CL~eWL~~l~~~r~sF~~i~g~CP~Cr~~i 280 (289)
..++|.|| +.+.+.+.+++ . -..|||.||..||..|++.-|++| .||.|+=.+
T Consensus 3 i~A~C~Ic-~d~~p~~~~l~----~-------i~~cGhifh~~cl~qwfe~~Ps~R--------~cpic~ik~ 55 (465)
T KOG0827|consen 3 IMAECHIC-IDGRPNDHELG----P-------IGTCGHIFHTTCLTQWFEGDPSNR--------GCPICQIKL 55 (465)
T ss_pred ccceeeEe-ccCCccccccc----c-------ccchhhHHHHHHHHHHHccCCccC--------CCCceeecc
Confidence 34689999 65555555443 1 267999999999999999999764 899999433
No 23
>smart00504 Ubox Modified RING finger domain. Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.
Probab=97.94 E-value=9.5e-06 Score=58.66 Aligned_cols=48 Identities=17% Similarity=0.359 Sum_probs=39.2
Q ss_pred ccccccccccccchhhccccCCCCCcccccCCCCCCcchhhHHHHHHhhhccCccccccccCCCCCCCccccccc
Q 022965 210 VECGICYAQFLPIDEELGAKSGGGTDYTCDNSSCSKAFHSVCLGDWLRSITTTRQSYDVLFGNCPYCSEPVAVKI 284 (289)
Q Consensus 210 ~eC~ICy~~~l~~d~~~~~~~g~~Pd~~C~n~~C~h~FH~~CL~eWL~~l~~~r~sF~~i~g~CP~Cr~~i~~~~ 284 (289)
..|+||...+. + | +. ..|||.|-..||.+|++. .+.||+|+++++.+.
T Consensus 2 ~~Cpi~~~~~~---------~---P--v~--~~~G~v~~~~~i~~~~~~-----------~~~cP~~~~~~~~~~ 49 (63)
T smart00504 2 FLCPISLEVMK---------D---P--VI--LPSGQTYERRAIEKWLLS-----------HGTDPVTGQPLTHED 49 (63)
T ss_pred cCCcCCCCcCC---------C---C--EE--CCCCCEEeHHHHHHHHHH-----------CCCCCCCcCCCChhh
Confidence 35999999864 1 3 33 689999999999999988 589999999986543
No 24
>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.87 E-value=9.4e-06 Score=76.57 Aligned_cols=49 Identities=20% Similarity=0.605 Sum_probs=41.0
Q ss_pred CCcccccccccccccchhhccccCCCCCcccccCCCCCCcchhhHHHHHHhhhccCccccccccCCCCCCCccccc
Q 022965 207 YQQVECGICYAQFLPIDEELGAKSGGGTDYTCDNSSCSKAFHSVCLGDWLRSITTTRQSYDVLFGNCPYCSEPVAV 282 (289)
Q Consensus 207 ~~~~eC~ICy~~~l~~d~~~~~~~g~~Pd~~C~n~~C~h~FH~~CL~eWL~~l~~~r~sF~~i~g~CP~Cr~~i~~ 282 (289)
+....|.||++.+. +-.| +.|||.|==.||.+|+.. ..+||.||++.+-
T Consensus 237 ~a~~kC~LCLe~~~--------------~pSa--TpCGHiFCWsCI~~w~~e-----------k~eCPlCR~~~~p 285 (293)
T KOG0317|consen 237 EATRKCSLCLENRS--------------NPSA--TPCGHIFCWSCILEWCSE-----------KAECPLCREKFQP 285 (293)
T ss_pred CCCCceEEEecCCC--------------CCCc--CcCcchHHHHHHHHHHcc-----------ccCCCcccccCCC
Confidence 35578999999874 2356 899999999999999998 6799999998653
No 25
>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.86 E-value=1e-05 Score=71.80 Aligned_cols=53 Identities=25% Similarity=0.543 Sum_probs=43.4
Q ss_pred CCcccccccccccccchhhccccCCCCCcccccCCCCCCcchhhHHHHHHhhhccCccccccccCCCCCCCccccccc
Q 022965 207 YQQVECGICYAQFLPIDEELGAKSGGGTDYTCDNSSCSKAFHSVCLGDWLRSITTTRQSYDVLFGNCPYCSEPVAVKI 284 (289)
Q Consensus 207 ~~~~eC~ICy~~~l~~d~~~~~~~g~~Pd~~C~n~~C~h~FH~~CL~eWL~~l~~~r~sF~~i~g~CP~Cr~~i~~~~ 284 (289)
++..-|+||+..+. ..+| ..++|||.|=..||.+-|+. ...||.|+++|+.|.
T Consensus 129 ~~~~~CPiCl~~~s----------ek~~----vsTkCGHvFC~~Cik~alk~-----------~~~CP~C~kkIt~k~ 181 (187)
T KOG0320|consen 129 EGTYKCPICLDSVS----------EKVP----VSTKCGHVFCSQCIKDALKN-----------TNKCPTCRKKITHKQ 181 (187)
T ss_pred ccccCCCceecchh----------hccc----cccccchhHHHHHHHHHHHh-----------CCCCCCcccccchhh
Confidence 45578999999874 1333 34899999999999999998 689999999888764
No 26
>KOG0828 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.79 E-value=8.7e-06 Score=81.58 Aligned_cols=62 Identities=23% Similarity=0.446 Sum_probs=40.1
Q ss_pred Cccccccccccccc---chhhccccCCCCCcccccCCCCCCcchhhHHHHHHhhhccCccccccccCCCCCCCcccc
Q 022965 208 QQVECGICYAQFLP---IDEELGAKSGGGTDYTCDNSSCSKAFHSVCLGDWLRSITTTRQSYDVLFGNCPYCSEPVA 281 (289)
Q Consensus 208 ~~~eC~ICy~~~l~---~d~~~~~~~g~~Pd~~C~n~~C~h~FH~~CL~eWL~~l~~~r~sF~~i~g~CP~Cr~~i~ 281 (289)
....|.||++.+-= +.+...+ .-.+.+.-.-++|.|.||..||..|+.+- +-.||.||.++.
T Consensus 570 ~t~dC~ICMt~I~l~~~~s~~~~~--~~~~~~nYm~tPC~HifH~~CL~~WMd~y----------kl~CPvCR~pLP 634 (636)
T KOG0828|consen 570 RTNDCVICMTPIDLRSTGSDCMVA--SMMVRRNYMLTPCHHIFHRQCLLQWMDTY----------KLICPVCRCPLP 634 (636)
T ss_pred ccccceEeccccceeeccCcchhh--hhhhhccccccchHHHHHHHHHHHHHhhh----------cccCCccCCCCC
Confidence 45789999997531 1111000 00111112336999999999999999961 459999999975
No 27
>TIGR00599 rad18 DNA repair protein rad18. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.69 E-value=3.6e-05 Score=76.01 Aligned_cols=49 Identities=29% Similarity=0.549 Sum_probs=39.9
Q ss_pred CCcccccccccccccchhhccccCCCCCcccccCCCCCCcchhhHHHHHHhhhccCccccccccCCCCCCCccccc
Q 022965 207 YQQVECGICYAQFLPIDEELGAKSGGGTDYTCDNSSCSKAFHSVCLGDWLRSITTTRQSYDVLFGNCPYCSEPVAV 282 (289)
Q Consensus 207 ~~~~eC~ICy~~~l~~d~~~~~~~g~~Pd~~C~n~~C~h~FH~~CL~eWL~~l~~~r~sF~~i~g~CP~Cr~~i~~ 282 (289)
+....|+||...+. .|- -..|||.|...||.+|+.. .+.||.|+.++..
T Consensus 24 e~~l~C~IC~d~~~------------~Pv----itpCgH~FCs~CI~~~l~~-----------~~~CP~Cr~~~~~ 72 (397)
T TIGR00599 24 DTSLRCHICKDFFD------------VPV----LTSCSHTFCSLCIRRCLSN-----------QPKCPLCRAEDQE 72 (397)
T ss_pred ccccCCCcCchhhh------------Ccc----CCCCCCchhHHHHHHHHhC-----------CCCCCCCCCcccc
Confidence 45679999999874 121 2789999999999999987 5789999998764
No 28
>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.68 E-value=2.5e-05 Score=71.71 Aligned_cols=56 Identities=23% Similarity=0.564 Sum_probs=43.5
Q ss_pred CCCcccccccccccccchhhccccCCCCCcccccCCCCCCcchhhHHHHHHhhhccCccccccccCCCCCCCcccccccc
Q 022965 206 NYQQVECGICYAQFLPIDEELGAKSGGGTDYTCDNSSCSKAFHSVCLGDWLRSITTTRQSYDVLFGNCPYCSEPVAVKIS 285 (289)
Q Consensus 206 ~~~~~eC~ICy~~~l~~d~~~~~~~g~~Pd~~C~n~~C~h~FH~~CL~eWL~~l~~~r~sF~~i~g~CP~Cr~~i~~~~~ 285 (289)
+...-+|.|||+--. =|-. +-|||.|==.|||+||..-+++ ..||.|+..|+.+..
T Consensus 44 ~~~~FdCNICLd~ak------------dPVv----TlCGHLFCWpClyqWl~~~~~~--------~~cPVCK~~Vs~~~v 99 (230)
T KOG0823|consen 44 DGGFFDCNICLDLAK------------DPVV----TLCGHLFCWPCLYQWLQTRPNS--------KECPVCKAEVSIDTV 99 (230)
T ss_pred CCCceeeeeeccccC------------CCEE----eecccceehHHHHHHHhhcCCC--------eeCCccccccccceE
Confidence 456789999998632 1433 5599999999999999985543 589999999887643
No 29
>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....
Probab=97.63 E-value=3.6e-05 Score=51.49 Aligned_cols=41 Identities=32% Similarity=0.762 Sum_probs=31.7
Q ss_pred ccccccccccchhhccccCCCCCcccccCCCCCCcchhhHHHHHHhhhccCccccccccCCCCCC
Q 022965 212 CGICYAQFLPIDEELGAKSGGGTDYTCDNSSCSKAFHSVCLGDWLRSITTTRQSYDVLFGNCPYC 276 (289)
Q Consensus 212 C~ICy~~~l~~d~~~~~~~g~~Pd~~C~n~~C~h~FH~~CL~eWL~~l~~~r~sF~~i~g~CP~C 276 (289)
|+||++.+.. |. ....|||.|+..||.+|+++ .. ...||.|
T Consensus 1 C~iC~~~~~~------------~~---~~~~C~H~fC~~C~~~~~~~--~~-------~~~CP~C 41 (41)
T PF00097_consen 1 CPICLEPFED------------PV---ILLPCGHSFCRDCLRKWLEN--SG-------SVKCPLC 41 (41)
T ss_dssp ETTTSSBCSS------------EE---EETTTSEEEEHHHHHHHHHH--TS-------SSBTTTT
T ss_pred CCcCCccccC------------CC---EEecCCCcchHHHHHHHHHh--cC-------CccCCcC
Confidence 8999998641 11 23899999999999999996 11 4579988
No 30
>PF14634 zf-RING_5: zinc-RING finger domain
Probab=97.58 E-value=5e-05 Score=52.22 Aligned_cols=44 Identities=25% Similarity=0.662 Sum_probs=33.1
Q ss_pred cccccccccccchhhccccCCCCCcccccCCCCCCcchhhHHHHHHhhhccCccccccccCCCCCCCc
Q 022965 211 ECGICYAQFLPIDEELGAKSGGGTDYTCDNSSCSKAFHSVCLGDWLRSITTTRQSYDVLFGNCPYCSE 278 (289)
Q Consensus 211 eC~ICy~~~l~~d~~~~~~~g~~Pd~~C~n~~C~h~FH~~CL~eWL~~l~~~r~sF~~i~g~CP~Cr~ 278 (289)
+|+||+..+.+ ...| ..+.|||.|...||..+... ...||.|++
T Consensus 1 ~C~~C~~~~~~---------~~~~----~l~~CgH~~C~~C~~~~~~~-----------~~~CP~C~k 44 (44)
T PF14634_consen 1 HCNICFEKYSE---------ERRP----RLTSCGHIFCEKCLKKLKGK-----------SVKCPICRK 44 (44)
T ss_pred CCcCcCccccC---------CCCe----EEcccCCHHHHHHHHhhcCC-----------CCCCcCCCC
Confidence 59999999831 1112 34899999999999998822 479999985
No 31
>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.54 E-value=2.1e-05 Score=73.87 Aligned_cols=62 Identities=29% Similarity=0.586 Sum_probs=43.7
Q ss_pred CcccccccccccccchhhccccCCCCCcccccCCCCCCcchhhHHHHHHhhhccCccccccccCCCCCCCccccccc
Q 022965 208 QQVECGICYAQFLPIDEELGAKSGGGTDYTCDNSSCSKAFHSVCLGDWLRSITTTRQSYDVLFGNCPYCSEPVAVKI 284 (289)
Q Consensus 208 ~~~eC~ICy~~~l~~d~~~~~~~g~~Pd~~C~n~~C~h~FH~~CL~eWL~~l~~~r~sF~~i~g~CP~Cr~~i~~~~ 284 (289)
.+..|+||-..+....|| +|-+-+. -...|+|.||.-||.-|--- +. ..+||||++.+..+-
T Consensus 223 ~d~vCaVCg~~~~~s~~e----egvient--y~LsCnHvFHEfCIrGWciv--GK-------kqtCPYCKekVdl~r 284 (328)
T KOG1734|consen 223 SDSVCAVCGQQIDVSVDE----EGVIENT--YKLSCNHVFHEFCIRGWCIV--GK-------KQTCPYCKEKVDLKR 284 (328)
T ss_pred CcchhHhhcchheeecch----hhhhhhh--eeeecccchHHHhhhhheee--cC-------CCCCchHHHHhhHhh
Confidence 456899999887533332 3433211 24789999999999999764 22 469999999887653
No 32
>KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair]
Probab=97.22 E-value=0.00022 Score=69.06 Aligned_cols=47 Identities=32% Similarity=0.759 Sum_probs=39.6
Q ss_pred CcccccccccccccchhhccccCCCCCcccccCCCCCCcchhhHHHHHHhhhccCccccccccCCCCCCCcccc
Q 022965 208 QQVECGICYAQFLPIDEELGAKSGGGTDYTCDNSSCSKAFHSVCLGDWLRSITTTRQSYDVLFGNCPYCSEPVA 281 (289)
Q Consensus 208 ~~~eC~ICy~~~l~~d~~~~~~~g~~Pd~~C~n~~C~h~FH~~CL~eWL~~l~~~r~sF~~i~g~CP~Cr~~i~ 281 (289)
....|+||++||. +|-. ..|||.|-+-||.+.|.. +..||.|+.+++
T Consensus 22 ~lLRC~IC~eyf~------------ip~i----tpCsHtfCSlCIR~~L~~-----------~p~CP~C~~~~~ 68 (442)
T KOG0287|consen 22 DLLRCGICFEYFN------------IPMI----TPCSHTFCSLCIRKFLSY-----------KPQCPTCCVTVT 68 (442)
T ss_pred HHHHHhHHHHHhc------------Ccee----ccccchHHHHHHHHHhcc-----------CCCCCceecccc
Confidence 4568999999984 4533 679999999999999998 789999998764
No 33
>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class
Probab=97.18 E-value=0.0003 Score=49.92 Aligned_cols=24 Identities=29% Similarity=0.731 Sum_probs=19.5
Q ss_pred CcchhhHHHHHHhhhccCccccccccCCCCCCC
Q 022965 245 KAFHSVCLGDWLRSITTTRQSYDVLFGNCPYCS 277 (289)
Q Consensus 245 h~FH~~CL~eWL~~l~~~r~sF~~i~g~CP~Cr 277 (289)
+.+|..||.+|+..-. ...||.|.
T Consensus 26 ~~vH~~Cl~~W~~~~~---------~~~C~iC~ 49 (49)
T smart00744 26 KYVHQECLERWINESG---------NKTCEICK 49 (49)
T ss_pred hHHHHHHHHHHHHHcC---------CCcCCCCC
Confidence 8999999999998711 23899985
No 34
>KOG4445 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]
Probab=97.14 E-value=0.00048 Score=65.75 Aligned_cols=127 Identities=23% Similarity=0.446 Sum_probs=75.1
Q ss_pred eEEEEEEeCCCCCCCCceEEecC----chhhhHHHHHhhhcccccCCCCchH-HHHHHHhcccCCCCCCCcCCCCccccc
Q 022965 139 CIIMLSIHIDDPSSLPECRFMGS----DPMVNSLRKTWQRNSKRWNKDKPFV-ENVANLLETQLPRPPEHENNYQQVECG 213 (289)
Q Consensus 139 ~sl~i~vdp~~P~~lP~~~flG~----~~~v~~lr~~l~~n~~~Wd~~~~i~-~NL~~il~~~~P~~~~~~~~~~~~eC~ 213 (289)
|.|.++|.+-.|...|.+.+.-| |..+..++..++..++.=. +..|+ +=++..-+ |-. ++.-....|.
T Consensus 47 vtl~m~vs~gYP~esPtvtl~nPRGl~d~~~~~i~~~~~~iikq~~-g~pii~~lie~~~e--~LT----~nn~p~gqCv 119 (368)
T KOG4445|consen 47 VTLEMTVSEGYPAESPTVTLSNPRGLGDPEFREIQRQIQEIIKQNS-GMPIICQLIEHCSE--FLT----ENNHPNGQCV 119 (368)
T ss_pred EEEEEecCCCCCCcCCceEecCCCCCCcHHHHHHHHHHHHHHHhcC-CCchhHHHHHHHHH--Hcc----cCCCCCCceE
Confidence 35566778889999999988765 4556666776766554322 23332 11121111 111 1222346899
Q ss_pred ccccccccchhhccccCCCCCcccccCCCCCCcchhhHHHHHHhhhccC-ccccc-----------cccCCCCCCCcccc
Q 022965 214 ICYAQFLPIDEELGAKSGGGTDYTCDNSSCSKAFHSVCLGDWLRSITTT-RQSYD-----------VLFGNCPYCSEPVA 281 (289)
Q Consensus 214 ICy~~~l~~d~~~~~~~g~~Pd~~C~n~~C~h~FH~~CL~eWL~~l~~~-r~sF~-----------~i~g~CP~Cr~~i~ 281 (289)
||+--|- ++ |..+ -+.|-|.||.+||...|..+.+. |+-|. .....||.||.+|.
T Consensus 120 ICLygfa---------~~--~~ft--~T~C~Hy~H~~ClaRyl~~~~~~lrqe~q~~~~~~qh~~~~~eavcpVcre~i~ 186 (368)
T KOG4445|consen 120 ICLYGFA---------SS--PAFT--VTACDHYMHFACLARYLTECLTGLRQEIQDAQKERQHMKEQVEAVCPVCRERIK 186 (368)
T ss_pred EEEEeec---------CC--Ccee--eehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhhhhHhhhhcc
Confidence 9998774 22 2122 27899999999998877543321 22221 12456999999987
Q ss_pred cccc
Q 022965 282 VKIS 285 (289)
Q Consensus 282 ~~~~ 285 (289)
...+
T Consensus 187 ~e~~ 190 (368)
T KOG4445|consen 187 IEEN 190 (368)
T ss_pred cccc
Confidence 6543
No 35
>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.86 E-value=0.00072 Score=68.27 Aligned_cols=53 Identities=19% Similarity=0.519 Sum_probs=41.6
Q ss_pred cccccccccccccchhhccccCCCCCcccccCCCCCCcchhhHHHHHHhhhccCccccccccCCCCCCCcccccc
Q 022965 209 QVECGICYAQFLPIDEELGAKSGGGTDYTCDNSSCSKAFHSVCLGDWLRSITTTRQSYDVLFGNCPYCSEPVAVK 283 (289)
Q Consensus 209 ~~eC~ICy~~~l~~d~~~~~~~g~~Pd~~C~n~~C~h~FH~~CL~eWL~~l~~~r~sF~~i~g~CP~Cr~~i~~~ 283 (289)
...|+||+++-. +|- .+.|||.|=-.||...+..- +-++ ++.||+|+..|..|
T Consensus 186 ~~~CPICL~~~~------------~p~----~t~CGHiFC~~CiLqy~~~s-~~~~-----~~~CPiC~s~I~~k 238 (513)
T KOG2164|consen 186 DMQCPICLEPPS------------VPV----RTNCGHIFCGPCILQYWNYS-AIKG-----PCSCPICRSTITLK 238 (513)
T ss_pred CCcCCcccCCCC------------ccc----ccccCceeeHHHHHHHHhhh-cccC-----CccCCchhhhcccc
Confidence 678999999743 332 36699999999999988873 2344 79999999998874
No 36
>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A.
Probab=96.78 E-value=0.0011 Score=45.48 Aligned_cols=42 Identities=26% Similarity=0.602 Sum_probs=28.5
Q ss_pred ccccccccccchhhccccCCCCCcccccCCCCCCcchhhHHHHHHhhhccCccccccccCCCCCC
Q 022965 212 CGICYAQFLPIDEELGAKSGGGTDYTCDNSSCSKAFHSVCLGDWLRSITTTRQSYDVLFGNCPYC 276 (289)
Q Consensus 212 C~ICy~~~l~~d~~~~~~~g~~Pd~~C~n~~C~h~FH~~CL~eWL~~l~~~r~sF~~i~g~CP~C 276 (289)
|+||++++.. | ....|||.|=..||..|.+...+. .-.||.|
T Consensus 1 CpiC~~~~~~------------P----v~l~CGH~FC~~Cl~~~~~~~~~~-------~~~CP~C 42 (42)
T PF15227_consen 1 CPICLDLFKD------------P----VSLPCGHSFCRSCLERLWKEPSGS-------GFSCPEC 42 (42)
T ss_dssp ETTTTSB-SS------------E----EE-SSSSEEEHHHHHHHHCCSSSS-------T---SSS
T ss_pred CCccchhhCC------------c----cccCCcCHHHHHHHHHHHHccCCc-------CCCCcCC
Confidence 8999999851 3 238999999999999999873322 1479987
No 37
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=96.47 E-value=0.00092 Score=66.66 Aligned_cols=49 Identities=29% Similarity=0.668 Sum_probs=35.8
Q ss_pred CcccccccccccccchhhccccCCCCCcccccCCCCCCcchhhHHHHHHhhhccCccccccccCCCCCCCcccc
Q 022965 208 QQVECGICYAQFLPIDEELGAKSGGGTDYTCDNSSCSKAFHSVCLGDWLRSITTTRQSYDVLFGNCPYCSEPVA 281 (289)
Q Consensus 208 ~~~eC~ICy~~~l~~d~~~~~~~g~~Pd~~C~n~~C~h~FH~~CL~eWL~~l~~~r~sF~~i~g~CP~Cr~~i~ 281 (289)
+...|++|++-+- ++ .+|-+| .-|.|.||..||.+|=.+ +||.||.-.+
T Consensus 174 ELPTCpVCLERMD---~s---~~gi~t------~~c~Hsfh~~cl~~w~~~-------------scpvcR~~q~ 222 (493)
T KOG0804|consen 174 ELPTCPVCLERMD---SS---TTGILT------ILCNHSFHCSCLMKWWDS-------------SCPVCRYCQS 222 (493)
T ss_pred cCCCcchhHhhcC---cc---ccceee------eecccccchHHHhhcccC-------------cChhhhhhcC
Confidence 4568999999762 21 133333 568999999999999776 8999986433
No 38
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.41 E-value=0.002 Score=63.72 Aligned_cols=52 Identities=27% Similarity=0.586 Sum_probs=39.7
Q ss_pred CCcccccccccccccchhhccccCCCCCcccc-cCCCCCCcchhhHHHHHHhhhccCccccccccCCCCCCCcc
Q 022965 207 YQQVECGICYAQFLPIDEELGAKSGGGTDYTC-DNSSCSKAFHSVCLGDWLRSITTTRQSYDVLFGNCPYCSEP 279 (289)
Q Consensus 207 ~~~~eC~ICy~~~l~~d~~~~~~~g~~Pd~~C-~n~~C~h~FH~~CL~eWL~~l~~~r~sF~~i~g~CP~Cr~~ 279 (289)
+....|+||++.+. .|...| ..++|||.|.+.||.+||-. .+ .-.||.|+.+
T Consensus 2 d~g~tcpiclds~~------------~~g~hr~vsl~cghlFgs~cie~wl~k--~~-------~~~cp~c~~k 54 (463)
T KOG1645|consen 2 DCGTTCPICLDSYT------------TAGNHRIVSLQCGHLFGSQCIEKWLGK--KT-------KMQCPLCSGK 54 (463)
T ss_pred CccccCceeeeeee------------ecCceEEeeecccccccHHHHHHHHhh--hh-------hhhCcccCCh
Confidence 35578999999874 233344 56999999999999999942 11 5699999875
No 39
>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.00 E-value=0.008 Score=58.61 Aligned_cols=64 Identities=22% Similarity=0.486 Sum_probs=41.6
Q ss_pred CcccccccccccccchhhccccCCCCCcccccCCCCCCcchhhHHHHHHhhhccCccccccccCCCCCCCcccccc
Q 022965 208 QQVECGICYAQFLPIDEELGAKSGGGTDYTCDNSSCSKAFHSVCLGDWLRSITTTRQSYDVLFGNCPYCSEPVAVK 283 (289)
Q Consensus 208 ~~~eC~ICy~~~l~~d~~~~~~~g~~Pd~~C~n~~C~h~FH~~CL~eWL~~l~~~r~sF~~i~g~CP~Cr~~i~~~ 283 (289)
.+.+||||++.....- + ..+.. =.++.|.|.|=..||..|=... |+=..+.-.||.||.+...-
T Consensus 160 ~~k~CGICme~i~ek~---~-~~~rf----gilpnC~H~~Cl~Cir~wr~~~----q~~~~~sksCP~CRv~s~~v 223 (344)
T KOG1039|consen 160 SEKECGICMETINEKA---A-SERRF----GILPNCNHSFCLNCIRKWRQAT----QFESKTSKSCPFCRVPSSFV 223 (344)
T ss_pred ccccceehhhhccccc---h-hhhhc----ccCCCcchhhhhcHhHhhhhhh----ccccccccCCCcccCccccc
Confidence 3568999999875110 0 00000 0237899999999999998652 22223356999999986543
No 40
>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.78 E-value=0.0063 Score=57.20 Aligned_cols=50 Identities=26% Similarity=0.650 Sum_probs=39.4
Q ss_pred CcccccccccccccchhhccccCCCCCcccccCCCCCCcchhhHHHH-HHhhhccCccccccccCCCCCCCcccccc
Q 022965 208 QQVECGICYAQFLPIDEELGAKSGGGTDYTCDNSSCSKAFHSVCLGD-WLRSITTTRQSYDVLFGNCPYCSEPVAVK 283 (289)
Q Consensus 208 ~~~eC~ICy~~~l~~d~~~~~~~g~~Pd~~C~n~~C~h~FH~~CL~e-WL~~l~~~r~sF~~i~g~CP~Cr~~i~~~ 283 (289)
.+-.|.||++... .-+| ..|||.|=-.||.- |-.. + ++-||.||+....+
T Consensus 214 ~d~kC~lC~e~~~--------------~ps~--t~CgHlFC~~Cl~~~~t~~-----k-----~~~CplCRak~~pk 264 (271)
T COG5574 214 ADYKCFLCLEEPE--------------VPSC--TPCGHLFCLSCLLISWTKK-----K-----YEFCPLCRAKVYPK 264 (271)
T ss_pred cccceeeeecccC--------------Cccc--ccccchhhHHHHHHHHHhh-----c-----cccCchhhhhccch
Confidence 5668999998753 2356 89999999999999 8765 1 56799999987654
No 41
>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms]
Probab=95.75 E-value=0.0059 Score=68.14 Aligned_cols=62 Identities=24% Similarity=0.542 Sum_probs=47.0
Q ss_pred CCCCcccccccccccccchhhccccCCCCCcccccCCCCCCcchhhHHHHHHhh-hccCccccccccCCCCCCCcccc
Q 022965 205 NNYQQVECGICYAQFLPIDEELGAKSGGGTDYTCDNSSCSKAFHSVCLGDWLRS-ITTTRQSYDVLFGNCPYCSEPVA 281 (289)
Q Consensus 205 ~~~~~~eC~ICy~~~l~~d~~~~~~~g~~Pd~~C~n~~C~h~FH~~CL~eWL~~-l~~~r~sF~~i~g~CP~Cr~~i~ 281 (289)
+.|.+..|-||+.+.+ +..| |...-|+|.||-.|...=|+. --+.|.-|+ |-+||.|.++|.
T Consensus 3482 kQD~DDmCmICFTE~L----------~AAP---~IqL~C~HiFHlqC~R~vLE~RW~GPRItF~--FisCPiC~n~In 3544 (3738)
T KOG1428|consen 3482 KQDADDMCMICFTEAL----------SAAP---AIQLDCSHIFHLQCCRRVLENRWLGPRITFG--FISCPICKNKIN 3544 (3738)
T ss_pred hcccCceEEEEehhhh----------CCCc---ceecCCccchhHHHHHHHHHhcccCCeeEEe--eeecccccchhh
Confidence 4467789999999977 2334 556899999999999877753 234577776 458999999985
No 42
>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis. Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....
Probab=95.69 E-value=0.0088 Score=45.32 Aligned_cols=50 Identities=14% Similarity=0.297 Sum_probs=35.2
Q ss_pred cccccccccccccchhhccccCCCCCcccccCCCCCCcchhhHHHHHHhhhccCccccccccCCCCCCCccccccc
Q 022965 209 QVECGICYAQFLPIDEELGAKSGGGTDYTCDNSSCSKAFHSVCLGDWLRSITTTRQSYDVLFGNCPYCSEPVAVKI 284 (289)
Q Consensus 209 ~~eC~ICy~~~l~~d~~~~~~~g~~Pd~~C~n~~C~h~FH~~CL~eWL~~l~~~r~sF~~i~g~CP~Cr~~i~~~~ 284 (289)
...|.||.+.+.. | +- ..|||.|-+.||.+||+.. .+.||.|+++++...
T Consensus 4 ~f~CpIt~~lM~d------------P--Vi--~~~G~tyer~~I~~~l~~~----------~~~~P~t~~~l~~~~ 53 (73)
T PF04564_consen 4 EFLCPITGELMRD------------P--VI--LPSGHTYERSAIERWLEQN----------GGTDPFTRQPLSESD 53 (73)
T ss_dssp GGB-TTTSSB-SS------------E--EE--ETTSEEEEHHHHHHHHCTT----------SSB-TTT-SB-SGGG
T ss_pred ccCCcCcCcHhhC------------c--ee--CCcCCEEcHHHHHHHHHcC----------CCCCCCCCCcCCccc
Confidence 3579999998741 2 22 5789999999999999971 689999999988753
No 43
>cd00195 UBCc Ubiquitin-conjugating enzyme E2, catalytic (UBCc) domain. This is part of the ubiquitin-mediated protein degradation pathway in which a thiol-ester linkage forms between a conserved cysteine and the C-terminus of ubiquitin and complexes with ubiquitin protein ligase enzymes, E3. This pathway regulates many fundamental cellular processes. There are also other E2s which form thiol-ester linkages without the use of E3s as well as several UBC homologs (TSG101, Mms2, Croc-1 and similar proteins) which lack the active site cysteine essential for ubiquitination and appear to function in DNA repair pathways which were omitted from the scope of this CD.
Probab=95.62 E-value=0.072 Score=44.63 Aligned_cols=82 Identities=18% Similarity=0.391 Sum_probs=56.5
Q ss_pred HHHHHHHHHhcccee----eee-cCCcceEEEEEEeC-----CCCEEEEEEEeCCCCCCCCCCccccCCCccc--c----
Q 022965 17 RSVYSEIEEVGWEHL----VRL-SEDLKFLSFRVIDK-----KGRVHCMEIQLDKNYPRSPPSISADVPYIFN--L---- 80 (289)
Q Consensus 17 ~~l~~Ei~~igw~~l----~~i-d~~l~~i~l~~~D~-----~~R~H~l~i~l~~~yp~~~P~~~~dlP~~f~--l---- 80 (289)
++|.+|+.++.-+.. +.. +.++....+.+.-. .|....++|.+|.+||.+||.+...-+ .+. +
T Consensus 2 ~Rl~~E~~~l~~~~~~~~~v~~~~~~~~~w~~~i~g~~~t~y~g~~~~~~~~~p~~yP~~pP~v~f~~~-i~HpnV~~~G 80 (141)
T cd00195 2 KRLQKELKDLKKDPPSGISAEPVEENLLEWHGTIRGPPDTPYEGGIFKLDIEFPEDYPFKPPKVRFVTK-IYHPNVDENG 80 (141)
T ss_pred chHHHHHHHHHhCCCCCeEEEECCCChhEEEEEEecCCCCCccCCEEEEEEECCCccCCCCCeEEEeCC-cccCCCCCCC
Confidence 578888888754322 223 34788888877743 356788899999999999999987322 111 1
Q ss_pred ---------c-cCccccHHHHHHHHHHHH
Q 022965 81 ---------K-WSRKSRLKDLLQQFREHL 99 (289)
Q Consensus 81 ---------~-w~~~s~L~~i~~qF~~~l 99 (289)
. |++..+|.+|+...+..+
T Consensus 81 ~icl~~l~~~~W~p~~~l~~il~~i~~~l 109 (141)
T cd00195 81 KICLSILKTHGWSPAYTLRTVLLSLQSLL 109 (141)
T ss_pred CCchhhcCCCCcCCcCcHHHHHHHHHHHH
Confidence 3 888778888877665554
No 44
>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]
Probab=95.62 E-value=0.0067 Score=58.00 Aligned_cols=47 Identities=28% Similarity=0.683 Sum_probs=39.4
Q ss_pred CCcccccccccccccchhhccccCCCCCcccccCCCCCCcchhhHHHHHHhhhccCccccccccCCCCCCCccc
Q 022965 207 YQQVECGICYAQFLPIDEELGAKSGGGTDYTCDNSSCSKAFHSVCLGDWLRSITTTRQSYDVLFGNCPYCSEPV 280 (289)
Q Consensus 207 ~~~~eC~ICy~~~l~~d~~~~~~~g~~Pd~~C~n~~C~h~FH~~CL~eWL~~l~~~r~sF~~i~g~CP~Cr~~i 280 (289)
|....|-||-.++. +| | .+.|||.|-+-||..-|.+ +..||.||.+.
T Consensus 23 Ds~lrC~IC~~~i~------------ip---~-~TtCgHtFCslCIR~hL~~-----------qp~CP~Cr~~~ 69 (391)
T COG5432 23 DSMLRCRICDCRIS------------IP---C-ETTCGHTFCSLCIRRHLGT-----------QPFCPVCREDP 69 (391)
T ss_pred hhHHHhhhhhheee------------cc---e-ecccccchhHHHHHHHhcC-----------CCCCccccccH
Confidence 35568999999874 34 2 3789999999999999999 78999999864
No 45
>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1. All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=95.37 E-value=0.015 Score=56.03 Aligned_cols=52 Identities=19% Similarity=0.439 Sum_probs=36.1
Q ss_pred ccccccccccccchhhccccCCCCCcccc-cCCCCCCcchhhHHHHHHhhhccCccccccccCCCCCCCcccccc
Q 022965 210 VECGICYAQFLPIDEELGAKSGGGTDYTC-DNSSCSKAFHSVCLGDWLRSITTTRQSYDVLFGNCPYCSEPVAVK 283 (289)
Q Consensus 210 ~eC~ICy~~~l~~d~~~~~~~g~~Pd~~C-~n~~C~h~FH~~CL~eWL~~l~~~r~sF~~i~g~CP~Cr~~i~~~ 283 (289)
..|+||.+... --|+..- .+ .|||.|=..||...+... .+.||.|+.++.-+
T Consensus 4 ~~CP~Ck~~~y-----------~np~~kl~i~-~CGH~~C~sCv~~l~~~~----------~~~CP~C~~~lrk~ 56 (309)
T TIGR00570 4 QGCPRCKTTKY-----------RNPSLKLMVN-VCGHTLCESCVDLLFVRG----------SGSCPECDTPLRKN 56 (309)
T ss_pred CCCCcCCCCCc-----------cCcccccccC-CCCCcccHHHHHHHhcCC----------CCCCCCCCCccchh
Confidence 47999999532 0133221 23 799999999999966431 46999999987543
No 46
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=95.35 E-value=0.0061 Score=60.25 Aligned_cols=52 Identities=27% Similarity=0.561 Sum_probs=37.1
Q ss_pred CcccccccccccccchhhccccCCCCCcccccCCCCCCcchhhHHHHHHhhhccCccccccccCCCCCCCccc
Q 022965 208 QQVECGICYAQFLPIDEELGAKSGGGTDYTCDNSSCSKAFHSVCLGDWLRSITTTRQSYDVLFGNCPYCSEPV 280 (289)
Q Consensus 208 ~~~eC~ICy~~~l~~d~~~~~~~g~~Pd~~C~n~~C~h~FH~~CL~eWL~~l~~~r~sF~~i~g~CP~Cr~~i 280 (289)
.+.-||.|-+-+.--++ .-.-.+|.|.||..|+++.|.... -.+||-||+-+
T Consensus 364 ~~L~Cg~CGe~~Glk~e------------~LqALpCsHIfH~rCl~e~L~~n~---------~rsCP~Crklr 415 (518)
T KOG1941|consen 364 TELYCGLCGESIGLKNE------------RLQALPCSHIFHLRCLQEILENNG---------TRSCPNCRKLR 415 (518)
T ss_pred HhhhhhhhhhhhcCCcc------------cccccchhHHHHHHHHHHHHHhCC---------CCCCccHHHHH
Confidence 44579999886642111 123489999999999999997622 35999999544
No 47
>PF10272 Tmpp129: Putative transmembrane protein precursor; InterPro: IPR018801 This entry consists of proteins conserved from worms to humans. They are purported to be transmembrane protein-precursors but their function is unknown.
Probab=95.26 E-value=0.15 Score=50.08 Aligned_cols=141 Identities=14% Similarity=0.250 Sum_probs=77.5
Q ss_pred EEEEEEeCCCCCCCCceEEecCchhhhHHHHHhhhccccc---CCCCchHHHHHHHhc--ccCCCCCC-CcCCCCccccc
Q 022965 140 IIMLSIHIDDPSSLPECRFMGSDPMVNSLRKTWQRNSKRW---NKDKPFVENVANLLE--TQLPRPPE-HENNYQQVECG 213 (289)
Q Consensus 140 sl~i~vdp~~P~~lP~~~flG~~~~v~~lr~~l~~n~~~W---d~~~~i~~NL~~il~--~~~P~~~~-~~~~~~~~eC~ 213 (289)
+|.|+|.+.+|.. +...+-=....-..||++|..-+..= ....|+.+-+...|. ++.-.+-. .++.++.+.|=
T Consensus 197 ~i~I~V~~~~~~v-~~F~Irlns~~y~~L~~kL~~PI~~~~ni~i~~tl~drF~e~F~~~V~~Np~y~~~~~~~e~e~Ci 275 (358)
T PF10272_consen 197 FITIRVKSTRPGV-KPFTIRLNSSEYRDLREKLRAPIRIARNIVIHQTLSDRFVEAFKEQVEQNPRYSYPESGQELEPCI 275 (358)
T ss_pred EEEEEEEeCCCCC-cceEEEEcHHHHHHHHHHhhCccccCCCceECCCHHHHHHHHHHHHHHhCCccccCCCccccCCcc
Confidence 5667777777763 34444335567788999997754322 223444443333332 11111111 12334556788
Q ss_pred ccccccccc-------hhhccccCCCCCcccccCCCCCCcchhhHHHHHHhhhcc--CccccccccCCCCCCCccccc
Q 022965 214 ICYAQFLPI-------DEELGAKSGGGTDYTCDNSSCSKAFHSVCLGDWLRSITT--TRQSYDVLFGNCPYCSEPVAV 282 (289)
Q Consensus 214 ICy~~~l~~-------d~~~~~~~g~~Pd~~C~n~~C~h~FH~~CL~eWL~~l~~--~r~sF~~i~g~CP~Cr~~i~~ 282 (289)
=|+..--.. +++ ..+.+..+..-|.+-.|.=..=..|+-+|+.+-.+ -|-..-.....||.||+++-+
T Consensus 276 gC~~~~~~vkl~k~C~~~~-~~g~~~~~~~~C~~C~CRPmWC~~Cm~kwFasrQd~~~~~~Wl~~~~~CPtCRa~FCi 352 (358)
T PF10272_consen 276 GCMQAQPNVKLVKRCADEE-QEGSPLPNEPPCQQCYCRPMWCLECMGKWFASRQDQQHPETWLSGKCPCPTCRAKFCI 352 (358)
T ss_pred ccccCCCCcEEEeccCCcc-cCCcccccCCCCccccccchHHHHHHHHHhhhcCCCCChhhhhcCCCCCCCCccccee
Confidence 888764210 111 01112233446777788888899999999986211 111233457899999998643
No 48
>PF05883 Baculo_RING: Baculovirus U-box/Ring-like domain; InterPro: IPR008573 This family consists of several Baculovirus proteins of around 130 residues in length. The function of this family is unknown, but it appears to be related to the U-box and ring finger domain by profile-profile comparison.
Probab=95.26 E-value=0.005 Score=52.59 Aligned_cols=52 Identities=27% Similarity=0.469 Sum_probs=33.0
Q ss_pred HHHHhcccCCCCCCCcCCCCcccccccccccccchhhccccCCCCCcccccCCCCCCcchhhHHHHH
Q 022965 189 VANLLETQLPRPPEHENNYQQVECGICYAQFLPIDEELGAKSGGGTDYTCDNSSCSKAFHSVCLGDW 255 (289)
Q Consensus 189 L~~il~~~~P~~~~~~~~~~~~eC~ICy~~~l~~d~~~~~~~g~~Pd~~C~n~~C~h~FH~~CL~eW 255 (289)
|.+++.-.+|+. ..||+||++.+.. .+|.++-..-....=.|.||..|+.+|
T Consensus 14 l~~lf~~~w~~~--------~~EC~IC~~~I~~-------~~GvV~vt~~g~lnLEkmfc~~C~~rw 65 (134)
T PF05883_consen 14 LERLFNDQWPRC--------TVECQICFDRIDN-------NDGVVYVTDGGTLNLEKMFCADCDKRW 65 (134)
T ss_pred HHHHHHHHcccc--------Ceeehhhhhhhhc-------CCCEEEEecCCeehHHHHHHHHHHHHH
Confidence 455665556653 4689999999852 134443221122333679999999999
No 49
>KOG4172 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.20 E-value=0.0087 Score=44.00 Aligned_cols=48 Identities=29% Similarity=0.638 Sum_probs=30.3
Q ss_pred cccccccccccccchhhccccCCCCCcccccCCCCCCcc-hhhHHHHHHhhhccCccccccccCCCCCCCccccc
Q 022965 209 QVECGICYAQFLPIDEELGAKSGGGTDYTCDNSSCSKAF-HSVCLGDWLRSITTTRQSYDVLFGNCPYCSEPVAV 282 (289)
Q Consensus 209 ~~eC~ICy~~~l~~d~~~~~~~g~~Pd~~C~n~~C~h~F-H~~CL~eWL~~l~~~r~sF~~i~g~CP~Cr~~i~~ 282 (289)
+.||.|||+.- .|.- .-.|||.. -.+|=.+-++. .+|.||.||.||.-
T Consensus 7 ~dECTICye~p--vdsV--------------lYtCGHMCmCy~Cg~rl~~~----------~~g~CPiCRapi~d 55 (62)
T KOG4172|consen 7 SDECTICYEHP--VDSV--------------LYTCGHMCMCYACGLRLKKA----------LHGCCPICRAPIKD 55 (62)
T ss_pred ccceeeeccCc--chHH--------------HHHcchHHhHHHHHHHHHHc----------cCCcCcchhhHHHH
Confidence 36899999973 2211 24577753 34554443343 18999999999853
No 50
>KOG1952 consensus Transcription factor NF-X1, contains NFX-type Zn2+-binding and R3H domains [Transcription]
Probab=95.15 E-value=0.013 Score=62.38 Aligned_cols=56 Identities=32% Similarity=0.667 Sum_probs=43.4
Q ss_pred CCcccccccccccccchhhccccCCCCCcccccCCCCCCcchhhHHHHHHhhhccCccccccccCCCCCCCc
Q 022965 207 YQQVECGICYAQFLPIDEELGAKSGGGTDYTCDNSSCSKAFHSVCLGDWLRSITTTRQSYDVLFGNCPYCSE 278 (289)
Q Consensus 207 ~~~~eC~ICy~~~l~~d~~~~~~~g~~Pd~~C~n~~C~h~FH~~CL~eWL~~l~~~r~sF~~i~g~CP~Cr~ 278 (289)
....+|.|||+.+.+ ..|.-.| ..|=|.||-.||.+|-++...+++ ..-.||+|..
T Consensus 189 ~~~yeCmIC~e~I~~----------t~~~WSC--~sCYhVFHl~CI~~WArs~ek~~~----~~WrCP~Cqs 244 (950)
T KOG1952|consen 189 NRKYECMICTERIKR----------TAPVWSC--KSCYHVFHLNCIKKWARSSEKTGQ----DGWRCPACQS 244 (950)
T ss_pred cCceEEEEeeeeccc----------cCCceec--chhhhhhhHHHHHHHHHHhhhccC----ccccCCcccc
Confidence 356799999998742 4477889 569999999999999998444333 2568999993
No 51
>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B.
Probab=94.94 E-value=0.011 Score=44.63 Aligned_cols=44 Identities=30% Similarity=0.832 Sum_probs=20.3
Q ss_pred cccccccccccchhhccccCCCCCcccccCCCCCCcchhhHHHHHHhhhccCccccccccCCCCCCCccccc
Q 022965 211 ECGICYAQFLPIDEELGAKSGGGTDYTCDNSSCSKAFHSVCLGDWLRSITTTRQSYDVLFGNCPYCSEPVAV 282 (289)
Q Consensus 211 eC~ICy~~~l~~d~~~~~~~g~~Pd~~C~n~~C~h~FH~~CL~eWL~~l~~~r~sF~~i~g~CP~Cr~~i~~ 282 (289)
-|+||.+.+. .| +| ...|+|.|=+.|+.+=+ ...||.|..|-.+
T Consensus 9 rCs~C~~~l~------------~p--v~-l~~CeH~fCs~Ci~~~~-------------~~~CPvC~~Paw~ 52 (65)
T PF14835_consen 9 RCSICFDILK------------EP--VC-LGGCEHIFCSSCIRDCI-------------GSECPVCHTPAWI 52 (65)
T ss_dssp S-SSS-S--S------------S---B----SSS--B-TTTGGGGT-------------TTB-SSS--B-S-
T ss_pred CCcHHHHHhc------------CC--ce-eccCccHHHHHHhHHhc-------------CCCCCCcCChHHH
Confidence 6999999863 12 34 47899999999995522 2369999998643
No 52
>PF08746 zf-RING-like: RING-like domain; InterPro: IPR014857 This is a zinc finger domain that is related to the C3HC4 RING finger domain (IPR001841 from INTERPRO). ; PDB: 3NW0_A 2CT0_A.
Probab=94.84 E-value=0.021 Score=39.51 Aligned_cols=43 Identities=26% Similarity=0.729 Sum_probs=24.5
Q ss_pred ccccccccccchhhccccCCCCCcccccCCCCCCcchhhHHHHHHhhhccCccccccccCCCCCC
Q 022965 212 CGICYAQFLPIDEELGAKSGGGTDYTCDNSSCSKAFHSVCLGDWLRSITTTRQSYDVLFGNCPYC 276 (289)
Q Consensus 212 C~ICy~~~l~~d~~~~~~~g~~Pd~~C~n~~C~h~FH~~CL~eWL~~l~~~r~sF~~i~g~CP~C 276 (289)
|.+|.+... -++.|.|..|+-.+|..|+..++++.. ...||-|
T Consensus 1 C~~C~~iv~-------------~G~~C~~~~C~~r~H~~C~~~y~r~~~---------~~~CP~C 43 (43)
T PF08746_consen 1 CEACKEIVT-------------QGQRCSNRDCNVRLHDDCFKKYFRHRS---------NPKCPNC 43 (43)
T ss_dssp -TTT-SB-S-------------SSEE-SS--S--EE-HHHHHHHTTT-S---------S-B-TTT
T ss_pred CcccchhHe-------------eeccCCCCccCchHHHHHHHHHHhcCC---------CCCCcCC
Confidence 667777654 356899999999999999999999821 2369987
No 53
>PTZ00390 ubiquitin-conjugating enzyme; Provisional
Probab=94.51 E-value=0.4 Score=41.37 Aligned_cols=85 Identities=16% Similarity=0.290 Sum_probs=59.7
Q ss_pred HHHHHHHHHHhccc-----eeeeecCCcceEEEEEEeC-----CCCEEEEEEEeCCCCCCCCCCccccCCC-c-------
Q 022965 16 SRSVYSEIEEVGWE-----HLVRLSEDLKFLSFRVIDK-----KGRVHCMEIQLDKNYPRSPPSISADVPY-I------- 77 (289)
Q Consensus 16 y~~l~~Ei~~igw~-----~l~~id~~l~~i~l~~~D~-----~~R~H~l~i~l~~~yp~~~P~~~~dlP~-~------- 77 (289)
-++|.+|+.+|.-+ .+.-.+.++...++.+.-. .|....++|.+|.+||..||.+..-=++ .
T Consensus 4 ~kRl~~E~~~l~~~~~~~i~~~~~~~d~~~w~~~i~GP~~tpY~gg~f~~~i~~p~~YP~~pP~v~F~t~i~HPNV~~~G 83 (152)
T PTZ00390 4 SKRIEKETQNLANDPPPGIKAEPDPGNYRHFKILMEGPDGTPYEGGYYKLELFLPEQYPMEPPKVRFLTKIYHPNIDKLG 83 (152)
T ss_pred HHHHHHHHHHHHhCCCCCeEEEECCCCccEEEEEEEcCCCCCCcCcEEEEEEECccccCCCCCEEEEecCCeeceECCCC
Confidence 36889999988533 2233456788888888843 3578899999999999999987643221 0
Q ss_pred -c-----ccccCccccHHHHHHHHHHHHH
Q 022965 78 -F-----NLKWSRKSRLKDLLQQFREHLE 100 (289)
Q Consensus 78 -f-----~l~w~~~s~L~~i~~qF~~~le 100 (289)
+ .=.|++..++.+|+..++..|.
T Consensus 84 ~iCl~iL~~~W~p~~ti~~iL~~i~~ll~ 112 (152)
T PTZ00390 84 RICLDILKDKWSPALQIRTVLLSIQALLS 112 (152)
T ss_pred eEECccCcccCCCCCcHHHHHHHHHHHHh
Confidence 0 1159998888888776666653
No 54
>PLN00172 ubiquitin conjugating enzyme; Provisional
Probab=94.49 E-value=0.45 Score=40.78 Aligned_cols=84 Identities=19% Similarity=0.268 Sum_probs=59.0
Q ss_pred HHHHHHHHHhccce-----eeeecCCcceEEEEEEeC-----CCCEEEEEEEeCCCCCCCCCCccccCCC-ccc------
Q 022965 17 RSVYSEIEEVGWEH-----LVRLSEDLKFLSFRVIDK-----KGRVHCMEIQLDKNYPRSPPSISADVPY-IFN------ 79 (289)
Q Consensus 17 ~~l~~Ei~~igw~~-----l~~id~~l~~i~l~~~D~-----~~R~H~l~i~l~~~yp~~~P~~~~dlP~-~f~------ 79 (289)
++|.+|+.++--+. +.-.+.++....+.+.-. .|....++|.+|.+||..||.+..--++ ..+
T Consensus 4 ~Rl~kE~~~l~~~~~~~~~~~~~~~nl~~w~~~i~GP~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPNv~~~G~ 83 (147)
T PLN00172 4 KRIQKEHKDLLKDPPSNCSAGPSDENLFRWTASIIGPSDSPYAGGVFFLSILFPPDYPFKPPKVQFTTKIYHPNINSNGS 83 (147)
T ss_pred HHHHHHHHHHHhCCCCCeEEEECCCChheEEEEEECCCCCCCCCCEEEEEEECCcccCCCCCEEEEecCcccceECCCCE
Confidence 58889999985332 222345788888887733 3468889999999999999998754432 001
Q ss_pred -------cccCccccHHHHHHHHHHHHH
Q 022965 80 -------LKWSRKSRLKDLLQQFREHLE 100 (289)
Q Consensus 80 -------l~w~~~s~L~~i~~qF~~~le 100 (289)
-.|++..+|.+|+...+..|.
T Consensus 84 iCl~il~~~W~p~~ti~~il~~i~~ll~ 111 (147)
T PLN00172 84 ICLDILRDQWSPALTVSKVLLSISSLLT 111 (147)
T ss_pred EEcccCcCCCCCcCcHHHHHHHHHHHHh
Confidence 159998888888776665553
No 55
>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.
Probab=94.48 E-value=0.028 Score=38.98 Aligned_cols=34 Identities=24% Similarity=0.503 Sum_probs=19.8
Q ss_pred ccccccccccchhhccccCCCCCcccccCCCCCCcchhhHHHHHHhh
Q 022965 212 CGICYAQFLPIDEELGAKSGGGTDYTCDNSSCSKAFHSVCLGDWLRS 258 (289)
Q Consensus 212 C~ICy~~~l~~d~~~~~~~g~~Pd~~C~n~~C~h~FH~~CL~eWL~~ 258 (289)
|.||.+ +. + +...|-. +.|||.|=..||.+++++
T Consensus 1 CpIc~e-~~--~------~~n~P~~----L~CGH~~c~~cl~~l~~~ 34 (43)
T PF13445_consen 1 CPICKE-FS--T------EENPPMV----LPCGHVFCKDCLQKLSKK 34 (43)
T ss_dssp -TTT-------T------TSS-EEE-----SSS-EEEHHHHHHHHHH
T ss_pred CCcccc-cc--C------CCCCCEE----EeCccHHHHHHHHHHHhc
Confidence 899999 64 1 1223432 669999999999999996
No 56
>PHA02862 5L protein; Provisional
Probab=94.36 E-value=0.044 Score=47.57 Aligned_cols=55 Identities=22% Similarity=0.448 Sum_probs=36.5
Q ss_pred ccccccccccccchhhccccCCCCCcccccCCCCCCcchhhHHHHHHhhhccCccccccccCCCCCCCcccccccc
Q 022965 210 VECGICYAQFLPIDEELGAKSGGGTDYTCDNSSCSKAFHSVCLGDWLRSITTTRQSYDVLFGNCPYCSEPVAVKIS 285 (289)
Q Consensus 210 ~eC~ICy~~~l~~d~~~~~~~g~~Pd~~C~n~~C~h~FH~~CL~eWL~~l~~~r~sF~~i~g~CP~Cr~~i~~~~~ 285 (289)
..|=||++.-. + . ..-|.=.--.+.-|+.||.+|+.. ++ ...||.|+.+...+..
T Consensus 3 diCWIC~~~~~---e------~---~~PC~C~GS~K~VHq~CL~~WIn~---S~------k~~CeLCkteY~Ik~~ 57 (156)
T PHA02862 3 DICWICNDVCD---E------R---NNFCGCNEEYKVVHIKCMQLWINY---SK------KKECNLCKTKYNIKKT 57 (156)
T ss_pred CEEEEecCcCC---C------C---cccccccCcchhHHHHHHHHHHhc---CC------CcCccCCCCeEEEEEc
Confidence 47999998621 1 1 122411111678899999999975 32 4699999998776543
No 57
>smart00212 UBCc Ubiquitin-conjugating enzyme E2, catalytic domain homologues. Proteins destined for proteasome-mediated degradation may be ubiquitinated. Ubiquitination follows conjugation of ubiquitin to a conserved cysteine residue of UBC homologues. This pathway functions in regulating many fundamental processes required for cell viability.TSG101 is one of several UBC homologues that lacks this active site cysteine.
Probab=94.28 E-value=0.22 Score=41.87 Aligned_cols=82 Identities=18% Similarity=0.324 Sum_probs=57.5
Q ss_pred HHHHHHHHhcccee----eee--cCCcceEEEEEEeC-----CCCEEEEEEEeCCCCCCCCCCccccCCC----------
Q 022965 18 SVYSEIEEVGWEHL----VRL--SEDLKFLSFRVIDK-----KGRVHCMEIQLDKNYPRSPPSISADVPY---------- 76 (289)
Q Consensus 18 ~l~~Ei~~igw~~l----~~i--d~~l~~i~l~~~D~-----~~R~H~l~i~l~~~yp~~~P~~~~dlP~---------- 76 (289)
+|.+|+.++--+.. +.. ++++....+.+... .|....++|.+|.+||..+|.+...-|.
T Consensus 2 Rl~~E~~~~~~~~~~~~~v~~~~~~~~~~w~~~i~gp~~~~y~g~~f~~~l~~p~~yP~~pP~v~f~~~i~Hp~i~~~G~ 81 (145)
T smart00212 2 RLLKELKELLKDPPPGISAYPVDEDNLLEWTGTIVGPPGTPYEGGIFKLTIEFPPDYPFKPPKVKFITKIYHPNVDSSGE 81 (145)
T ss_pred hHHHHHHHHHhCCCCCeEEEECCCCChheEEEEEEcCCCCCcCCcEEEEEEECCcccCCCCCEEEEeCCceEeeECCCCC
Confidence 67888888754422 122 23788888888742 3577889999999999999998875552
Q ss_pred -----ccccccCccccHHHHHHHHHHHH
Q 022965 77 -----IFNLKWSRKSRLKDLLQQFREHL 99 (289)
Q Consensus 77 -----~f~l~w~~~s~L~~i~~qF~~~l 99 (289)
...-.|++..+|.+++...+.++
T Consensus 82 icl~~l~~~~W~p~~~l~~il~~i~~~l 109 (145)
T smart00212 82 ICLDILKQEKWSPATTLETVLLSIQSLL 109 (145)
T ss_pred EehhhcCCCCCCCCCcHHHHHHHHHHHH
Confidence 11025998888988877766665
No 58
>PF00179 UQ_con: Ubiquitin-conjugating enzyme; InterPro: IPR000608 The post-translational attachment of ubiquitin (IPR000626 from INTERPRO) to proteins (ubiquitinylation) alters the function, location or trafficking of a protein, or targets it to the 26S proteasome for degradation [, , ]. Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade []. The E1 enzyme mediates an ATP-dependent transfer of a thioester-linked ubiquitin molecule to a cysteine residue on the E2 enzyme. The E2 enzyme (6.3.2.19 from EC) then either transfers the ubiquitin moiety directly to a substrate, or to an E3 ligase, which can also ubiquitinylate a substrate. There are several different E2 enzymes (over 30 in humans), which are broadly grouped into four classes, all of which have a core catalytic domain (containing the active site cysteine), and some of which have short N- and C-terminal amino acid extensions: class I enzymes consist of just the catalytic core domain (UBC), class II possess a UBC and a C-terminal extension, class III possess a UBC and an N-terminal extension, and class IV possess a UBC and both N- and C-terminal extensions. These extensions appear to be important for some subfamily function, including E2 localisation and protein-protein interactions []. In addition, there are proteins with an E2-like fold that are devoid of catalytic activity, but which appear to assist in poly-ubiquitin chain formation.; GO: 0016881 acid-amino acid ligase activity; PDB: 2AAK_A 3SY2_C 1FBV_C 3SQV_C 1C4Z_D 1JAT_B 2GMI_B 2H2Y_D 2R0J_A 3E95_B ....
Probab=94.14 E-value=0.61 Score=38.89 Aligned_cols=82 Identities=20% Similarity=0.345 Sum_probs=54.1
Q ss_pred HHHHHHHHhcccee-----eeec-CCcceEEEEEEeC-----CCCEEEEEEEeCCCCCCCCCCccccCCC--c-------
Q 022965 18 SVYSEIEEVGWEHL-----VRLS-EDLKFLSFRVIDK-----KGRVHCMEIQLDKNYPRSPPSISADVPY--I------- 77 (289)
Q Consensus 18 ~l~~Ei~~igw~~l-----~~id-~~l~~i~l~~~D~-----~~R~H~l~i~l~~~yp~~~P~~~~dlP~--~------- 77 (289)
||.+|+.++.-+.. .-.+ .++....+.+.-. .|....++|.+|.+||.+||.+...-|+ +
T Consensus 1 Rl~~E~~~l~~~~~~~~~~~~~~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~~p~~YP~~pP~v~f~t~i~HPni~~~G~ 80 (140)
T PF00179_consen 1 RLQKELKELQKNPPPGISVQPSEDDNLFEWHVTIFGPPGTPYEGGIFKFRISFPPDYPFSPPKVRFLTPIFHPNIDENGR 80 (140)
T ss_dssp HHHHHHHHHHHSHTTTEEEEEESTTETTEEEEEEEBETTSTTTTSEEEEEEEETTTTTTS--EEEESSS-SBTTB-TTSB
T ss_pred CHHHHHHHHhhCCCCCEEEEECCCCChheEEEEEeccCccceeccccccccccccccccccccccccccccccccccccc
Confidence 57788877743322 2233 3788999988751 4678999999999999999988755432 0
Q ss_pred -----ccc-ccCccccHHHHHHHHHHHH
Q 022965 78 -----FNL-KWSRKSRLKDLLQQFREHL 99 (289)
Q Consensus 78 -----f~l-~w~~~s~L~~i~~qF~~~l 99 (289)
+.- .|++..+|.+|+..++..|
T Consensus 81 icl~~l~~~~W~p~~~i~~il~~i~~ll 108 (140)
T PF00179_consen 81 ICLDILNPESWSPSYTIESILLSIQSLL 108 (140)
T ss_dssp BGHGGGTTTTC-TTSHHHHHHHHHHHHH
T ss_pred chhhhhhcccCCcccccccHHHHHHHHH
Confidence 111 3998888888887666655
No 59
>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=93.99 E-value=0.03 Score=49.08 Aligned_cols=46 Identities=24% Similarity=0.516 Sum_probs=37.0
Q ss_pred CCCcccccccccccccchhhccccCCCCCcccccCCCCCCcchhhHHHHHHhhhccCccccccccCCCCCCCc
Q 022965 206 NYQQVECGICYAQFLPIDEELGAKSGGGTDYTCDNSSCSKAFHSVCLGDWLRSITTTRQSYDVLFGNCPYCSE 278 (289)
Q Consensus 206 ~~~~~eC~ICy~~~l~~d~~~~~~~g~~Pd~~C~n~~C~h~FH~~CL~eWL~~l~~~r~sF~~i~g~CP~Cr~ 278 (289)
.++...|.||++++.. | ....|||.|=..||..+... .-.||.||.
T Consensus 10 ~~~~~~C~iC~~~~~~------------p----~~l~C~H~~c~~C~~~~~~~-----------~~~Cp~cr~ 55 (386)
T KOG2177|consen 10 LQEELTCPICLEYFRE------------P----VLLPCGHNFCRACLTRSWEG-----------PLSCPVCRP 55 (386)
T ss_pred ccccccChhhHHHhhc------------C----ccccccchHhHHHHHHhcCC-----------CcCCcccCC
Confidence 3466799999999851 3 23789999999999999881 369999994
No 60
>KOG3268 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=93.96 E-value=0.012 Score=52.73 Aligned_cols=45 Identities=40% Similarity=0.748 Sum_probs=38.2
Q ss_pred CchHHHHHHHhcccCCCCCCC--cCCCCcccccccccccccchhhcc
Q 022965 183 KPFVENVANLLETQLPRPPEH--ENNYQQVECGICYAQFLPIDEELG 227 (289)
Q Consensus 183 ~~i~~NL~~il~~~~P~~~~~--~~~~~~~eC~ICy~~~l~~d~~~~ 227 (289)
.++.+|++-++|+++|.|... +++.++.||+||+..+++.+|++|
T Consensus 120 v~~P~gie~~~~i~L~dPe~~~led~kd~lE~df~a~a~Lekdd~~~ 166 (234)
T KOG3268|consen 120 VSFPEGIECILGIELPDPEGLQLEDDKDQLECDFCAAAFLEKDDELG 166 (234)
T ss_pred ccccccceEEeccccCCccccccccccceeeeCccHHHhcCcchhhh
Confidence 466789999999999999865 456688999999999999888764
No 61
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=93.82 E-value=0.019 Score=61.01 Aligned_cols=29 Identities=24% Similarity=0.584 Sum_probs=26.3
Q ss_pred CCCCCcchhhHHHHHHhhhccCccccccccCCCCCCCccc
Q 022965 241 SSCSKAFHSVCLGDWLRSITTTRQSYDVLFGNCPYCSEPV 280 (289)
Q Consensus 241 ~~C~h~FH~~CL~eWL~~l~~~r~sF~~i~g~CP~Cr~~i 280 (289)
.+|+|+||.+||..|-+. -.+||.||..+
T Consensus 142 k~c~H~FC~~Ci~sWsR~-----------aqTCPiDR~EF 170 (1134)
T KOG0825|consen 142 KHTAHYFCEECVGSWSRC-----------AQTCPVDRGEF 170 (1134)
T ss_pred cccccccHHHHhhhhhhh-----------cccCchhhhhh
Confidence 679999999999999998 68999999854
No 62
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.72 E-value=0.026 Score=60.54 Aligned_cols=56 Identities=30% Similarity=0.596 Sum_probs=42.5
Q ss_pred cccccccccccccchhhccccCCCCCcccccCCCCCCcchhhHHHHHHhhhccC--cccc----------------cccc
Q 022965 209 QVECGICYAQFLPIDEELGAKSGGGTDYTCDNSSCSKAFHSVCLGDWLRSITTT--RQSY----------------DVLF 270 (289)
Q Consensus 209 ~~eC~ICy~~~l~~d~~~~~~~g~~Pd~~C~n~~C~h~FH~~CL~eWL~~l~~~--r~sF----------------~~i~ 270 (289)
+..|+||.-.++ .-|-.+ -.|||.||..||.+=...+-+. ++-+ +++-
T Consensus 817 ~d~C~~C~~~ll-----------~~pF~v---f~CgH~FH~~Cl~~~v~~~~~~~~~~~~a~~l~~k~~~l~~~l~~iia 882 (911)
T KOG2034|consen 817 QDSCDHCGRPLL-----------IKPFYV---FPCGHCFHRDCLIRHVLSLLSEELSQKTAIELQAKRKKLKNELEDIIA 882 (911)
T ss_pred ccchHHhcchhh-----------cCccee---eeccchHHHHHHHHHHHccccHhhhhhhhhhhhhHHHHHHHHHHHHHH
Confidence 458999999887 114333 6899999999999877765543 3666 7778
Q ss_pred CCCCCCCc
Q 022965 271 GNCPYCSE 278 (289)
Q Consensus 271 g~CP~Cr~ 278 (289)
..||+|..
T Consensus 883 aeC~lCg~ 890 (911)
T KOG2034|consen 883 AECPLCGE 890 (911)
T ss_pred hhCccchH
Confidence 89999996
No 63
>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=93.50 E-value=0.046 Score=52.43 Aligned_cols=51 Identities=27% Similarity=0.583 Sum_probs=37.8
Q ss_pred cccccccccccccchhhccccCCCCCcccccCCCCCCcchhhHHHHHHhhhccCccccccccCCCCCCCcccccccc
Q 022965 209 QVECGICYAQFLPIDEELGAKSGGGTDYTCDNSSCSKAFHSVCLGDWLRSITTTRQSYDVLFGNCPYCSEPVAVKIS 285 (289)
Q Consensus 209 ~~eC~ICy~~~l~~d~~~~~~~g~~Pd~~C~n~~C~h~FH~~CL~eWL~~l~~~r~sF~~i~g~CP~Cr~~i~~~~~ 285 (289)
..+|.|||.. +..| .++.|+|.|-..||+-=... -.++|++||.||.-.|.
T Consensus 7 ~~eC~IC~nt------------~n~P----v~l~C~HkFCyiCiKGsy~n----------dk~~CavCR~pids~i~ 57 (324)
T KOG0824|consen 7 KKECLICYNT------------GNCP----VNLYCFHKFCYICIKGSYKN----------DKKTCAVCRFPIDSTID 57 (324)
T ss_pred CCcceeeecc------------CCcC----ccccccchhhhhhhcchhhc----------CCCCCceecCCCCcchh
Confidence 4589999975 2344 46899999999999653332 15799999999876553
No 64
>PHA02825 LAP/PHD finger-like protein; Provisional
Probab=93.48 E-value=0.11 Score=45.59 Aligned_cols=54 Identities=24% Similarity=0.664 Sum_probs=37.2
Q ss_pred CCcccccccccccccchhhccccCCCCCcccccCCCCCC---cchhhHHHHHHhhhccCccccccccCCCCCCCcccccc
Q 022965 207 YQQVECGICYAQFLPIDEELGAKSGGGTDYTCDNSSCSK---AFHSVCLGDWLRSITTTRQSYDVLFGNCPYCSEPVAVK 283 (289)
Q Consensus 207 ~~~~eC~ICy~~~l~~d~~~~~~~g~~Pd~~C~n~~C~h---~FH~~CL~eWL~~l~~~r~sF~~i~g~CP~Cr~~i~~~ 283 (289)
....+|=||++... ... .-| +|.. .-|+.||.+|+.. ++ ...|+.|.++..++
T Consensus 6 ~~~~~CRIC~~~~~---------~~~---~PC---~CkGs~k~VH~sCL~rWi~~---s~------~~~CeiC~~~Y~i~ 61 (162)
T PHA02825 6 LMDKCCWICKDEYD---------VVT---NYC---NCKNENKIVHKECLEEWINT---SK------NKSCKICNGPYNIK 61 (162)
T ss_pred CCCCeeEecCCCCC---------Ccc---CCc---ccCCCchHHHHHHHHHHHhc---CC------CCcccccCCeEEEE
Confidence 35568999987621 011 124 5655 5599999999997 22 35899999987766
Q ss_pred c
Q 022965 284 I 284 (289)
Q Consensus 284 ~ 284 (289)
-
T Consensus 62 ~ 62 (162)
T PHA02825 62 K 62 (162)
T ss_pred E
Confidence 3
No 65
>COG5078 Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=93.28 E-value=0.79 Score=40.05 Aligned_cols=84 Identities=15% Similarity=0.366 Sum_probs=61.4
Q ss_pred HHHHHHHHHHHhccceeee-----ecC-CcceEEEEEEeC-----CCCEEEEEEEeCCCCCCCCCCccccCCCcccc---
Q 022965 15 FSRSVYSEIEEVGWEHLVR-----LSE-DLKFLSFRVIDK-----KGRVHCMEIQLDKNYPRSPPSISADVPYIFNL--- 80 (289)
Q Consensus 15 ~y~~l~~Ei~~igw~~l~~-----id~-~l~~i~l~~~D~-----~~R~H~l~i~l~~~yp~~~P~~~~dlP~~f~l--- 80 (289)
=.++|.+|++.+.-+.... .+. ++..-+..+.-- .|+.-.++|++|.+||..||.+...=++ |+.
T Consensus 6 a~~RL~kE~~~l~~~~~~~~~a~p~~d~~l~~w~~~i~GP~dtpYegg~f~~~l~fP~~YP~~PPkv~F~t~i-~HPNV~ 84 (153)
T COG5078 6 ALKRLLKELKKLQKDPPPGISAGPVDDDNLFHWEATITGPPDTPYEGGIFKLTLEFPEDYPFKPPKVRFTTKI-FHPNVD 84 (153)
T ss_pred HHHHHHHHHHHHhcCCCCceEEEECCCCcceeEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCCeeeeccCC-cCCCcC
Confidence 4679999999998887322 333 777788877754 4688999999999999999998766552 221
Q ss_pred ------------ccCccccHHHHHHHHHHHH
Q 022965 81 ------------KWSRKSRLKDLLQQFREHL 99 (289)
Q Consensus 81 ------------~w~~~s~L~~i~~qF~~~l 99 (289)
.|+|.-+|..|+-..+..|
T Consensus 85 ~~G~vCLdIL~~~WsP~~~l~sILlsl~slL 115 (153)
T COG5078 85 PSGNVCLDILKDRWSPVYTLETILLSLQSLL 115 (153)
T ss_pred CCCCChhHHHhCCCCccccHHHHHHHHHHHH
Confidence 6888777776666555444
No 66
>KOG3005 consensus GIY-YIG type nuclease [General function prediction only]
Probab=92.45 E-value=0.078 Score=50.11 Aligned_cols=59 Identities=31% Similarity=0.598 Sum_probs=44.0
Q ss_pred ccccccccccccchhhccccCCCCCcccccCCCCCCcchhhHHHHHHhhhccCccccccccCCCCCCCcc
Q 022965 210 VECGICYAQFLPIDEELGAKSGGGTDYTCDNSSCSKAFHSVCLGDWLRSITTTRQSYDVLFGNCPYCSEP 279 (289)
Q Consensus 210 ~eC~ICy~~~l~~d~~~~~~~g~~Pd~~C~n~~C~h~FH~~CL~eWL~~l~~~r~sF~~i~g~CP~Cr~~ 279 (289)
.+|-||+..+++.+ .. --.|.|+-|+..+|..||.+ ..+.....-.--+-|.||-|++-
T Consensus 183 ~~celc~~ei~e~~--------~~-~a~c~~~~c~~~~h~~CLa~--~~~~~e~g~~~p~eg~cp~C~~~ 241 (276)
T KOG3005|consen 183 VECELCEKEILETD--------WS-RATCPNPDCDSLNHLTCLAE--ELLEVEPGQLIPLEGMCPKCEKF 241 (276)
T ss_pred hhhHHHHHHhcccc--------ce-eccCCCCCCCchhhhhhhhH--HHhccCCCceeccCCCCCchhce
Confidence 58999999986322 11 13589999999999999999 33334555566678999999984
No 67
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=92.25 E-value=0.093 Score=53.91 Aligned_cols=60 Identities=28% Similarity=0.662 Sum_probs=45.1
Q ss_pred CCCCcccccccccccccchhhccccCCCCCcccccCCCCCCcchhhHHHHHHhhhccCccccccccCCCCCCCccccccc
Q 022965 205 NNYQQVECGICYAQFLPIDEELGAKSGGGTDYTCDNSSCSKAFHSVCLGDWLRSITTTRQSYDVLFGNCPYCSEPVAVKI 284 (289)
Q Consensus 205 ~~~~~~eC~ICy~~~l~~d~~~~~~~g~~Pd~~C~n~~C~h~FH~~CL~eWL~~l~~~r~sF~~i~g~CP~Cr~~i~~~~ 284 (289)
++.+..+||+|-+.-. | . .-.+|-|.|-..||.|+..+...+. .-+||.|..++++-.
T Consensus 532 enk~~~~C~lc~d~ae---d-----------~--i~s~ChH~FCrlCi~eyv~~f~~~~------nvtCP~C~i~LsiDl 589 (791)
T KOG1002|consen 532 ENKGEVECGLCHDPAE---D-----------Y--IESSCHHKFCRLCIKEYVESFMENN------NVTCPVCHIGLSIDL 589 (791)
T ss_pred cccCceeecccCChhh---h-----------h--HhhhhhHHHHHHHHHHHHHhhhccc------CCCCccccccccccc
Confidence 3457789999987531 1 1 1278999999999999999855442 369999999998875
Q ss_pred cc
Q 022965 285 SI 286 (289)
Q Consensus 285 ~~ 286 (289)
+.
T Consensus 590 se 591 (791)
T KOG1002|consen 590 SE 591 (791)
T ss_pred cc
Confidence 53
No 68
>KOG4265 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=91.89 E-value=0.13 Score=50.25 Aligned_cols=69 Identities=22% Similarity=0.412 Sum_probs=41.3
Q ss_pred HHHHhcccCC-CCCCC-cCCCCcccccccccccccchhhccccCCCCCcccccCCCCCCcch-hhHHHHHHhhhccCccc
Q 022965 189 VANLLETQLP-RPPEH-ENNYQQVECGICYAQFLPIDEELGAKSGGGTDYTCDNSSCSKAFH-SVCLGDWLRSITTTRQS 265 (289)
Q Consensus 189 L~~il~~~~P-~~~~~-~~~~~~~eC~ICy~~~l~~d~~~~~~~g~~Pd~~C~n~~C~h~FH-~~CL~eWL~~l~~~r~s 265 (289)
|+.++|++=+ ...+. ++.+...+|-||+++-. |.+ -+.|.|..= +.|- +-|+-
T Consensus 268 LqEiyGien~~v~~~~~~~~~~gkeCVIClse~r--------------dt~--vLPCRHLCLCs~Ca-~~Lr~------- 323 (349)
T KOG4265|consen 268 LQEIYGIENSTVEGTDADESESGKECVICLSESR--------------DTV--VLPCRHLCLCSGCA-KSLRY------- 323 (349)
T ss_pred eehhhccccCCCCCCccccccCCCeeEEEecCCc--------------ceE--EecchhhehhHhHH-HHHHH-------
Confidence 5667887622 22222 12245689999999742 111 167777653 4554 34552
Q ss_pred cccccCCCCCCCccccccc
Q 022965 266 YDVLFGNCPYCSEPVAVKI 284 (289)
Q Consensus 266 F~~i~g~CP~Cr~~i~~~~ 284 (289)
-.+.||.||++|.--+
T Consensus 324 ---q~n~CPICRqpi~~ll 339 (349)
T KOG4265|consen 324 ---QTNNCPICRQPIEELL 339 (349)
T ss_pred ---hhcCCCccccchHhhh
Confidence 1479999999986443
No 69
>KOG0417 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=91.58 E-value=1.2 Score=38.81 Aligned_cols=82 Identities=18% Similarity=0.346 Sum_probs=61.0
Q ss_pred HHHHHHHHhccceeeee-----cCCcceEEEEEEeCC-----CCEEEEEEEeCCCCCCCCCCccccCCC-----------
Q 022965 18 SVYSEIEEVGWEHLVRL-----SEDLKFLSFRVIDKK-----GRVHCMEIQLDKNYPRSPPSISADVPY----------- 76 (289)
Q Consensus 18 ~l~~Ei~~igw~~l~~i-----d~~l~~i~l~~~D~~-----~R~H~l~i~l~~~yp~~~P~~~~dlP~----------- 76 (289)
+|++|+..+.-+....+ +.++.+.+.++..-. |-...|.|.+|..||..||.+..-=++
T Consensus 5 RI~kE~~~l~~dp~~~~~~~~~~dnl~~w~a~I~GP~~SpYEgG~F~l~I~~p~~YP~~PPkV~F~TkIyHPNI~~~G~I 84 (148)
T KOG0417|consen 5 RIIKELQDLLRDPPPGCSAGPVGDNLFHWQATILGPPGSPYEGGVFFLEIHFPEDYPFKPPKVRFLTKIYHPNIDSNGRI 84 (148)
T ss_pred HHHHHHHHHhcCCCCCCccCCCCCceeeEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCCceEeecccccCCcCccccc
Confidence 89999998887776433 345777777777543 578999999999999999987654442
Q ss_pred ---ccccccCccccHHHHHHHHHHHH
Q 022965 77 ---IFNLKWSRKSRLKDLLQQFREHL 99 (289)
Q Consensus 77 ---~f~l~w~~~s~L~~i~~qF~~~l 99 (289)
.+.-+|++..+|..|+...+..|
T Consensus 85 clDILk~~WsPAl~i~~VllsI~sLL 110 (148)
T KOG0417|consen 85 CLDILKDQWSPALTISKVLLSICSLL 110 (148)
T ss_pred hHHhhhccCChhhHHHHHHHHHHHHh
Confidence 11226999888888887777666
No 70
>KOG3002 consensus Zn finger protein [General function prediction only]
Probab=90.74 E-value=0.14 Score=49.22 Aligned_cols=47 Identities=23% Similarity=0.669 Sum_probs=35.0
Q ss_pred CCCcccccccccccccchhhccccCCCCCcccccCCCCCCcchhhHHHHHHhhhccCccccccccCCCCCCCcccc
Q 022965 206 NYQQVECGICYAQFLPIDEELGAKSGGGTDYTCDNSSCSKAFHSVCLGDWLRSITTTRQSYDVLFGNCPYCSEPVA 281 (289)
Q Consensus 206 ~~~~~eC~ICy~~~l~~d~~~~~~~g~~Pd~~C~n~~C~h~FH~~CL~eWL~~l~~~r~sF~~i~g~CP~Cr~~i~ 281 (289)
.....+|.||+.++. .|...|+| +|-.|-.==.+. ...||+||.+|+
T Consensus 45 ~~~lleCPvC~~~l~------------~Pi~QC~n------GHlaCssC~~~~-----------~~~CP~Cr~~~g 91 (299)
T KOG3002|consen 45 DLDLLDCPVCFNPLS------------PPIFQCDN------GHLACSSCRTKV-----------SNKCPTCRLPIG 91 (299)
T ss_pred chhhccCchhhccCc------------ccceecCC------CcEehhhhhhhh-----------cccCCccccccc
Confidence 445679999999986 58889988 566665332222 689999999987
No 71
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1
Probab=89.84 E-value=0.31 Score=35.62 Aligned_cols=48 Identities=23% Similarity=0.612 Sum_probs=36.7
Q ss_pred CcccccccccccccchhhccccCCCCCcccccCCCCCCcchhhHHHHHHhhhccCccccccccCCCCC--CCccccc
Q 022965 208 QQVECGICYAQFLPIDEELGAKSGGGTDYTCDNSSCSKAFHSVCLGDWLRSITTTRQSYDVLFGNCPY--CSEPVAV 282 (289)
Q Consensus 208 ~~~eC~ICy~~~l~~d~~~~~~~g~~Pd~~C~n~~C~h~FH~~CL~eWL~~l~~~r~sF~~i~g~CP~--Cr~~i~~ 282 (289)
...-|.+|-..+.+.|| ..+| +.||-++|+.|-.+ .|.|-+ |..+++.
T Consensus 4 ~~~~C~~Cg~~~~~~dD----------iVvC--p~CgapyHR~C~~~---------------~g~C~~~~c~~~~~~ 53 (54)
T PF14446_consen 4 EGCKCPVCGKKFKDGDD----------IVVC--PECGAPYHRDCWEK---------------AGGCINYSCGTGFEW 53 (54)
T ss_pred cCccChhhCCcccCCCC----------EEEC--CCCCCcccHHHHhh---------------CCceEeccCCCCccc
Confidence 34579999999864332 3579 88999999999754 688888 8877664
No 72
>KOG0311 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=89.49 E-value=0.078 Score=51.87 Aligned_cols=51 Identities=31% Similarity=0.531 Sum_probs=39.7
Q ss_pred CcccccccccccccchhhccccCCCCCcccccCCCCCCcchhhHHHHHHhhhccCccccccccCCCCCCCcccccc
Q 022965 208 QQVECGICYAQFLPIDEELGAKSGGGTDYTCDNSSCSKAFHSVCLGDWLRSITTTRQSYDVLFGNCPYCSEPVAVK 283 (289)
Q Consensus 208 ~~~eC~ICy~~~l~~d~~~~~~~g~~Pd~~C~n~~C~h~FH~~CL~eWL~~l~~~r~sF~~i~g~CP~Cr~~i~~~ 283 (289)
.+..|.||++.+. +.+.+ ..|.|.|-..||.+-|+. + ..+||.||+.+.-|
T Consensus 42 ~~v~c~icl~llk----------~tmtt-----keClhrfc~~ci~~a~r~---g-------n~ecptcRk~l~Sk 92 (381)
T KOG0311|consen 42 IQVICPICLSLLK----------KTMTT-----KECLHRFCFDCIWKALRS---G-------NNECPTCRKKLVSK 92 (381)
T ss_pred hhhccHHHHHHHH----------hhccc-----HHHHHHHHHHHHHHHHHh---c-------CCCCchHHhhcccc
Confidence 5678999999864 23332 578999999999999987 2 57999999976544
No 73
>KOG1814 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=89.43 E-value=0.73 Score=46.10 Aligned_cols=52 Identities=29% Similarity=0.616 Sum_probs=37.3
Q ss_pred ccccccccccccchhhccccCCCCCcccc-cCCCCCCcchhhHHHHHHhhhccCccccccccCCCCCCCc
Q 022965 210 VECGICYAQFLPIDEELGAKSGGGTDYTC-DNSSCSKAFHSVCLGDWLRSITTTRQSYDVLFGNCPYCSE 278 (289)
Q Consensus 210 ~eC~ICy~~~l~~d~~~~~~~g~~Pd~~C-~n~~C~h~FH~~CL~eWL~~l~~~r~sF~~i~g~CP~Cr~ 278 (289)
-+|.|||+... |+ .| .-.+|+|.|=..|+...+...-...+ +..-.||-|.-
T Consensus 185 f~C~ICf~e~~----------G~----~c~~~lpC~Hv~Ck~C~kdY~~~~i~eg~---v~~l~Cp~~~C 237 (445)
T KOG1814|consen 185 FDCCICFEEQM----------GQ----HCFKFLPCSHVFCKSCLKDYFTIQIQEGQ---VSCLKCPDPKC 237 (445)
T ss_pred ccceeeehhhc----------Cc----ceeeecccchHHHHHHHHHHHHHhhhcce---eeeecCCCCCC
Confidence 47999999853 22 33 34899999999999999987553332 33567887654
No 74
>KOG3970 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=89.08 E-value=0.35 Score=45.03 Aligned_cols=63 Identities=21% Similarity=0.465 Sum_probs=45.1
Q ss_pred CCCCcccccccccccccchhhccccCCCCCcccccCCCCCCcchhhHHHHHHhhhccCccccccccCCCCCCCccccccc
Q 022965 205 NNYQQVECGICYAQFLPIDEELGAKSGGGTDYTCDNSSCSKAFHSVCLGDWLRSITTTRQSYDVLFGNCPYCSEPVAVKI 284 (289)
Q Consensus 205 ~~~~~~eC~ICy~~~l~~d~~~~~~~g~~Pd~~C~n~~C~h~FH~~CL~eWL~~l~~~r~sF~~i~g~CP~Cr~~i~~~~ 284 (289)
+.|....|..|-..... | .|....|=|.||=.||.+|-..+|.+.- ----.||-|+.+|--.+
T Consensus 46 DsDY~pNC~LC~t~La~---------g-----dt~RLvCyhlfHW~ClneraA~lPanTA---PaGyqCP~Cs~eiFPp~ 108 (299)
T KOG3970|consen 46 DSDYNPNCRLCNTPLAS---------G-----DTTRLVCYHLFHWKCLNERAANLPANTA---PAGYQCPCCSQEIFPPI 108 (299)
T ss_pred hcCCCCCCceeCCcccc---------C-----cceeehhhhhHHHHHhhHHHhhCCCcCC---CCcccCCCCCCccCCCc
Confidence 34566779999887542 2 2445789999999999999999884321 11358999999875443
No 75
>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]
Probab=87.15 E-value=0.3 Score=48.79 Aligned_cols=47 Identities=26% Similarity=0.595 Sum_probs=34.8
Q ss_pred ccccccccccccchhhccccCCCCCcccccCCCCCCcchhhHHHHHHhhhccCccccccccCCCCCCCcccc
Q 022965 210 VECGICYAQFLPIDEELGAKSGGGTDYTCDNSSCSKAFHSVCLGDWLRSITTTRQSYDVLFGNCPYCSEPVA 281 (289)
Q Consensus 210 ~eC~ICy~~~l~~d~~~~~~~g~~Pd~~C~n~~C~h~FH~~CL~eWL~~l~~~r~sF~~i~g~CP~Cr~~i~ 281 (289)
.-|-||-+.- . |. .-..|||..-..||..|=.+-. ...||+||-.|.
T Consensus 370 eLCKICaend-----------K---dv--kIEPCGHLlCt~CLa~WQ~sd~---------gq~CPFCRcEIK 416 (563)
T KOG1785|consen 370 ELCKICAEND-----------K---DV--KIEPCGHLLCTSCLAAWQDSDE---------GQTCPFCRCEIK 416 (563)
T ss_pred HHHHHhhccC-----------C---Cc--ccccccchHHHHHHHhhcccCC---------CCCCCceeeEec
Confidence 4799997641 1 11 2378999999999999987622 258999998764
No 76
>PF12906 RINGv: RING-variant domain; PDB: 2D8S_A 1VYX_A.
Probab=87.12 E-value=0.56 Score=32.85 Aligned_cols=26 Identities=31% Similarity=0.832 Sum_probs=17.6
Q ss_pred CCCC---cchhhHHHHHHhhhccCccccccccCCCCCC
Q 022965 242 SCSK---AFHSVCLGDWLRSITTTRQSYDVLFGNCPYC 276 (289)
Q Consensus 242 ~C~h---~FH~~CL~eWL~~l~~~r~sF~~i~g~CP~C 276 (289)
+|.- .-|..||.+|++.-. ...|+.|
T Consensus 19 ~C~Gs~~~vH~~CL~~W~~~~~---------~~~C~~C 47 (47)
T PF12906_consen 19 RCKGSMKYVHRSCLERWIRESG---------NRKCEIC 47 (47)
T ss_dssp S-SSCCGSEECCHHHHHHHHHT----------SB-TTT
T ss_pred ccCCCcchhHHHHHHHHHHhcC---------CCcCCCC
Confidence 4554 899999999999711 2468876
No 77
>KOG0427 consensus Ubiquitin conjugating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=86.87 E-value=5.3 Score=34.41 Aligned_cols=86 Identities=15% Similarity=0.292 Sum_probs=65.4
Q ss_pred HHHHHHHHHHhccce----eeeecCCcceEEEEEEeCCC-----CEEEEEEEeCCCCCCCCCCccccCCCccc--c----
Q 022965 16 SRSVYSEIEEVGWEH----LVRLSEDLKFLSFRVIDKKG-----RVHCMEIQLDKNYPRSPPSISADVPYIFN--L---- 80 (289)
Q Consensus 16 y~~l~~Ei~~igw~~----l~~id~~l~~i~l~~~D~~~-----R~H~l~i~l~~~yp~~~P~~~~dlP~~f~--l---- 80 (289)
-.+|.+|+-++.-+- .+.+..+++.-.+.+..+.| ....|-++++..||.+.|.+..-=|.+.. +
T Consensus 17 t~RLqKEl~e~q~~pP~G~~~~v~dnlqqWii~v~Ga~GTLYa~e~~qLq~~F~~~YP~esPqVmF~~~~P~HPHiYSNG 96 (161)
T KOG0427|consen 17 TNRLQKELSEWQNNPPTGFKHRVTDNLQQWIIEVTGAPGTLYANETYQLQVEFPEHYPMESPQVMFVGPAPLHPHIYSNG 96 (161)
T ss_pred HHHHHHHHHHHhcCCCCcceeecccchheeEEEEecCCceeecCcEEEEEEecCCCCCCCCCeEEEecCCCCCCceecCC
Confidence 457888998876553 25678889988888887754 78899999999999999988755454332 2
Q ss_pred ---------ccCccccHHHHHHHHHHHHHH
Q 022965 81 ---------KWSRKSRLKDLLQQFREHLEK 101 (289)
Q Consensus 81 ---------~w~~~s~L~~i~~qF~~~le~ 101 (289)
.|+|.-++..|+-....+|.+
T Consensus 97 HICL~iL~d~WsPAmsv~SvClSIlSMLSS 126 (161)
T KOG0427|consen 97 HICLDILYDSWSPAMSVQSVCLSILSMLSS 126 (161)
T ss_pred eEEEEeecccCCcchhhHHHHHHHHHHHcc
Confidence 699988888888777777754
No 78
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=85.83 E-value=0.51 Score=50.45 Aligned_cols=27 Identities=30% Similarity=0.858 Sum_probs=23.6
Q ss_pred ccccCCCCCCcchhhHHHHHHhhhccCccccccccCCCCC
Q 022965 236 YTCDNSSCSKAFHSVCLGDWLRSITTTRQSYDVLFGNCPY 275 (289)
Q Consensus 236 ~~C~n~~C~h~FH~~CL~eWL~~l~~~r~sF~~i~g~CP~ 275 (289)
..| +.|+|.-|..|..+|+++ ...||.
T Consensus 1043 ~~C--g~C~Hv~H~sc~~eWf~~-----------gd~Cps 1069 (1081)
T KOG0309|consen 1043 NFC--GTCGHVGHTSCMMEWFRT-----------GDVCPS 1069 (1081)
T ss_pred hhh--ccccccccHHHHHHHHhc-----------CCcCCC
Confidence 467 789999999999999999 568884
No 79
>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms]
Probab=85.66 E-value=0.5 Score=46.79 Aligned_cols=52 Identities=23% Similarity=0.532 Sum_probs=40.8
Q ss_pred CCcccccccccccccchhhccccCCCCCcccccCCCCCCcchhhHHHHHHhhhccCccccccccCCCCCCCccccccc
Q 022965 207 YQQVECGICYAQFLPIDEELGAKSGGGTDYTCDNSSCSKAFHSVCLGDWLRSITTTRQSYDVLFGNCPYCSEPVAVKI 284 (289)
Q Consensus 207 ~~~~eC~ICy~~~l~~d~~~~~~~g~~Pd~~C~n~~C~h~FH~~CL~eWL~~l~~~r~sF~~i~g~CP~Cr~~i~~~~ 284 (289)
+....|.||..... -|-++ ..|||.|=..|+.+|+.. +..||-|+..+....
T Consensus 19 ~~~l~C~~C~~vl~------------~p~~~---~~cgh~fC~~C~~~~~~~-----------~~~cp~~~~~~~~~~ 70 (391)
T KOG0297|consen 19 DENLLCPICMSVLR------------DPVQT---TTCGHRFCAGCLLESLSN-----------HQKCPVCRQELTQAE 70 (391)
T ss_pred cccccCcccccccc------------CCCCC---CCCCCcccccccchhhcc-----------CcCCcccccccchhh
Confidence 45568999999864 12221 589999999999999998 689999998876543
No 80
>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C.
Probab=85.35 E-value=0.43 Score=34.88 Aligned_cols=46 Identities=15% Similarity=0.403 Sum_probs=27.6
Q ss_pred CCCcccccccccccccchhhccccCCCCCcccccCCCCCCcchhhHHHHHHhhhccCccccccccCCCCC
Q 022965 206 NYQQVECGICYAQFLPIDEELGAKSGGGTDYTCDNSSCSKAFHSVCLGDWLRSITTTRQSYDVLFGNCPY 275 (289)
Q Consensus 206 ~~~~~eC~ICy~~~l~~d~~~~~~~g~~Pd~~C~n~~C~h~FH~~CL~eWL~~l~~~r~sF~~i~g~CP~ 275 (289)
+.....|+|....+.. |- .+.+|||.|-...|.+||++ +. ...||.
T Consensus 8 ~~~~~~CPiT~~~~~~------------PV---~s~~C~H~fek~aI~~~i~~----~~-----~~~CPv 53 (57)
T PF11789_consen 8 GTISLKCPITLQPFED------------PV---KSKKCGHTFEKEAILQYIQR----NG-----SKRCPV 53 (57)
T ss_dssp SB--SB-TTTSSB-SS------------EE---EESSS--EEEHHHHHHHCTT----TS------EE-SC
T ss_pred cEeccCCCCcCChhhC------------Cc---CcCCCCCeecHHHHHHHHHh----cC-----CCCCCC
Confidence 3456789999998741 21 24699999999999999943 11 468998
No 81
>KOG1940 consensus Zn-finger protein [General function prediction only]
Probab=84.90 E-value=0.68 Score=44.11 Aligned_cols=46 Identities=24% Similarity=0.520 Sum_probs=34.8
Q ss_pred ccccccccccccchhhccccCCCCCcccccCCCCCCcchhhHHHHHHhhhccCccccccccCCCCCCCc
Q 022965 210 VECGICYAQFLPIDEELGAKSGGGTDYTCDNSSCSKAFHSVCLGDWLRSITTTRQSYDVLFGNCPYCSE 278 (289)
Q Consensus 210 ~eC~ICy~~~l~~d~~~~~~~g~~Pd~~C~n~~C~h~FH~~CL~eWL~~l~~~r~sF~~i~g~CP~Cr~ 278 (289)
..|.||++++.... ..| +..+|||.-|..|+.+-..+ .-+||.|.+
T Consensus 159 ~ncPic~e~l~~s~--------~~~----~~~~CgH~~h~~cf~e~~~~-----------~y~CP~C~~ 204 (276)
T KOG1940|consen 159 FNCPICKEYLFLSF--------EDA----GVLKCGHYMHSRCFEEMICE-----------GYTCPICSK 204 (276)
T ss_pred CCCchhHHHhcccc--------ccC----CccCcccchHHHHHHHHhcc-----------CCCCCcccc
Confidence 34999999876211 122 34899999998888887666 479999998
No 82
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=84.75 E-value=0.46 Score=50.36 Aligned_cols=49 Identities=20% Similarity=0.647 Sum_probs=38.1
Q ss_pred CcccccccccccccchhhccccCCCCCcccccCCCCCCcchhhHHHHHHhhhccCccccccccCCCCCCCccccc
Q 022965 208 QQVECGICYAQFLPIDEELGAKSGGGTDYTCDNSSCSKAFHSVCLGDWLRSITTTRQSYDVLFGNCPYCSEPVAV 282 (289)
Q Consensus 208 ~~~eC~ICy~~~l~~d~~~~~~~g~~Pd~~C~n~~C~h~FH~~CL~eWL~~l~~~r~sF~~i~g~CP~Cr~~i~~ 282 (289)
+...|+.|-.-. +.+.-++|||.|=..|+..-+.+ || -.||-|..+++.
T Consensus 642 ~~LkCs~Cn~R~----------------Kd~vI~kC~H~FC~~Cvq~r~et----Rq------RKCP~Cn~aFga 690 (698)
T KOG0978|consen 642 ELLKCSVCNTRW----------------KDAVITKCGHVFCEECVQTRYET----RQ------RKCPKCNAAFGA 690 (698)
T ss_pred hceeCCCccCch----------------hhHHHHhcchHHHHHHHHHHHHH----hc------CCCCCCCCCCCc
Confidence 345799999543 22345899999999999887776 65 699999998765
No 83
>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=84.31 E-value=0.11 Score=51.44 Aligned_cols=51 Identities=18% Similarity=0.408 Sum_probs=40.3
Q ss_pred CcccccccccccccchhhccccCCCCCcccccCCCCCCcchhhHHHHHHhhhccCccccccccCCCCCCCcccc
Q 022965 208 QQVECGICYAQFLPIDEELGAKSGGGTDYTCDNSSCSKAFHSVCLGDWLRSITTTRQSYDVLFGNCPYCSEPVA 281 (289)
Q Consensus 208 ~~~eC~ICy~~~l~~d~~~~~~~g~~Pd~~C~n~~C~h~FH~~CL~eWL~~l~~~r~sF~~i~g~CP~Cr~~i~ 281 (289)
-...|+||+..+.. ++ ..|....|||.+|+.||.+||.+ ...||-|+..+.
T Consensus 195 lv~sl~I~~~slK~---~y---------~k~~~~~~g~~~~~~kL~k~L~~-----------~~kl~~~~rel~ 245 (465)
T KOG0827|consen 195 LVGSLSICFESLKQ---NY---------DKISAIVCGHIYHHGKLSKWLAT-----------KRKLPSCRRELP 245 (465)
T ss_pred HHhhhHhhHHHHHH---HH---------HHHHHHhhcccchhhHHHHHHHH-----------HHHhHHHHhhhh
Confidence 44689999987652 11 24677899999999999999998 578999988654
No 84
>PHA03096 p28-like protein; Provisional
Probab=83.75 E-value=0.78 Score=43.81 Aligned_cols=58 Identities=16% Similarity=0.210 Sum_probs=35.7
Q ss_pred ccccccccccccchhhccccCCCCCcccccCCCCCCcchhhHHHHHHhhhccCccccccccCCCCCCCccc
Q 022965 210 VECGICYAQFLPIDEELGAKSGGGTDYTCDNSSCSKAFHSVCLGDWLRSITTTRQSYDVLFGNCPYCSEPV 280 (289)
Q Consensus 210 ~eC~ICy~~~l~~d~~~~~~~g~~Pd~~C~n~~C~h~FH~~CL~eWL~~l~~~r~sF~~i~g~CP~Cr~~i 280 (289)
.+||||++....-. ..+...|. .+.|.|.|=..|+..|-.+-..+ -+...||-|+.-+
T Consensus 179 k~c~ic~e~~~~k~-~~~~~fgi-------l~~c~h~fc~~ci~~wr~~~~~~-----e~~~~c~~~~~~~ 236 (284)
T PHA03096 179 KICGICLENIKAKY-IIKKYYGI-------LSEIKHEFNIFCIKIWMTESLYK-----ETEPENRRLNTVI 236 (284)
T ss_pred hhcccchhhhhhhc-cccccccc-------cccCCcHHHHHHHHHHHHhhhhc-----ccCccccchhhHH
Confidence 68999999865210 00001122 36799999999999999863322 2345566665543
No 85
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=83.38 E-value=0.54 Score=50.68 Aligned_cols=41 Identities=22% Similarity=0.561 Sum_probs=31.5
Q ss_pred ccccccccccccchhhccccCCCCCcccccCCCCCCcchhhHHHHHHhhhccCccccccccCCCCCCCcc
Q 022965 210 VECGICYAQFLPIDEELGAKSGGGTDYTCDNSSCSKAFHSVCLGDWLRSITTTRQSYDVLFGNCPYCSEP 279 (289)
Q Consensus 210 ~eC~ICy~~~l~~d~~~~~~~g~~Pd~~C~n~~C~h~FH~~CL~eWL~~l~~~r~sF~~i~g~CP~Cr~~ 279 (289)
..|.+|-... .+|-. .-.|||.||++|+. +. -..||-|+-.
T Consensus 841 skCs~C~~~L------------dlP~V---hF~CgHsyHqhC~e---~~-----------~~~CP~C~~e 881 (933)
T KOG2114|consen 841 SKCSACEGTL------------DLPFV---HFLCGHSYHQHCLE---DK-----------EDKCPKCLPE 881 (933)
T ss_pred eeecccCCcc------------cccee---eeecccHHHHHhhc---cC-----------cccCCccchh
Confidence 5799998764 35643 46899999999997 22 4699999874
No 86
>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].
Probab=81.77 E-value=0.54 Score=36.78 Aligned_cols=32 Identities=16% Similarity=0.442 Sum_probs=22.8
Q ss_pred CcccccccccccccchhhccccCCCCCcccccCCCCCCcchhhHHH
Q 022965 208 QQVECGICYAQFLPIDEELGAKSGGGTDYTCDNSSCSKAFHSVCLG 253 (289)
Q Consensus 208 ~~~eC~ICy~~~l~~d~~~~~~~g~~Pd~~C~n~~C~h~FH~~CL~ 253 (289)
....|++|...+. + ....--+|||.||..|+.
T Consensus 77 ~~~~C~vC~k~l~---------~-----~~f~~~p~~~v~H~~C~~ 108 (109)
T PF10367_consen 77 ESTKCSVCGKPLG---------N-----SVFVVFPCGHVVHYSCIK 108 (109)
T ss_pred CCCCccCcCCcCC---------C-----ceEEEeCCCeEEeccccc
Confidence 3457999999864 1 122336789999999974
No 87
>KOG0418 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=81.71 E-value=8.7 Score=34.88 Aligned_cols=57 Identities=25% Similarity=0.392 Sum_probs=43.3
Q ss_pred HHHHHHHHHHhccce--------eeeecCCcceEEEEEEeCC-----CCEEEEEEEeCCCCCCCCCCccc
Q 022965 16 SRSVYSEIEEVGWEH--------LVRLSEDLKFLSFRVIDKK-----GRVHCMEIQLDKNYPRSPPSISA 72 (289)
Q Consensus 16 y~~l~~Ei~~igw~~--------l~~id~~l~~i~l~~~D~~-----~R~H~l~i~l~~~yp~~~P~~~~ 72 (289)
+++|-+|..++--+. +.-++.+++.|+..+..-- |-...|.|++|.+||..||-+..
T Consensus 5 ~~ri~~e~k~v~~~~eisq~~I~ve~vn~~~~~ikG~I~GP~~TPYEGG~FeldI~iPe~YPF~pPkv~F 74 (200)
T KOG0418|consen 5 FKRINREQKEVLDDPEISQAGIIVEMVNENLKEIKGHIAGPEDTPYEGGVFELDIKIPENYPFKPPKVKF 74 (200)
T ss_pred HHHHHHHHHHhccChhhhhcceEEEEccCChhhceeEecCCCCCCCCCceEEEEEecCCCCCCCCCceee
Confidence 466777777665553 3556778999999887543 46788999999999999998843
No 88
>KOG4159 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=81.58 E-value=0.97 Score=45.11 Aligned_cols=47 Identities=26% Similarity=0.675 Sum_probs=35.5
Q ss_pred CcccccccccccccchhhccccCCCCCcccccCCCCCCcchhhHHHHHHhhhccCccccccccCCCCCCCcccc
Q 022965 208 QQVECGICYAQFLPIDEELGAKSGGGTDYTCDNSSCSKAFHSVCLGDWLRSITTTRQSYDVLFGNCPYCSEPVA 281 (289)
Q Consensus 208 ~~~eC~ICy~~~l~~d~~~~~~~g~~Pd~~C~n~~C~h~FH~~CL~eWL~~l~~~r~sF~~i~g~CP~Cr~~i~ 281 (289)
.+-+|.||+..+-+ | .++.|||.|=..||..=|.. ...||.||.++.
T Consensus 83 sef~c~vc~~~l~~------------p----v~tpcghs~c~~Cl~r~ld~-----------~~~cp~Cr~~l~ 129 (398)
T KOG4159|consen 83 SEFECCVCSRALYP------------P----VVTPCGHSFCLECLDRSLDQ-----------ETECPLCRDELV 129 (398)
T ss_pred chhhhhhhHhhcCC------------C----ccccccccccHHHHHHHhcc-----------CCCCcccccccc
Confidence 45789999887641 2 23689999999998773332 689999999874
No 89
>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=80.80 E-value=1.4 Score=41.23 Aligned_cols=51 Identities=24% Similarity=0.513 Sum_probs=38.0
Q ss_pred ccccccccccccchhhccccCCCCCcccccCCCCCCcchhhHHHHHHhhhccCccccccccCCCCCCCccc
Q 022965 210 VECGICYAQFLPIDEELGAKSGGGTDYTCDNSSCSKAFHSVCLGDWLRSITTTRQSYDVLFGNCPYCSEPV 280 (289)
Q Consensus 210 ~eC~ICy~~~l~~d~~~~~~~g~~Pd~~C~n~~C~h~FH~~CL~eWL~~l~~~r~sF~~i~g~CP~Cr~~i 280 (289)
.+|.||-..|..++ ...+| .+++|||.|=..|+..=+.. + ...||+||.+.
T Consensus 4 ~~c~~c~~~~s~~~------~~~~p----~~l~c~h~~c~~c~~~l~~~---~-------~i~cpfcR~~~ 54 (296)
T KOG4185|consen 4 PECEICNEDYSSED------GDHIP----RVLKCGHTICQNCASKLLGN---S-------RILCPFCRETT 54 (296)
T ss_pred CceeecCccccccC------cccCC----cccccCceehHhHHHHHhcC---c-------eeeccCCCCcc
Confidence 47999999997432 22345 35889999999999775554 2 46889999984
No 90
>KOG4275 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=80.75 E-value=0.47 Score=45.67 Aligned_cols=87 Identities=15% Similarity=0.254 Sum_probs=53.4
Q ss_pred hhhHHHHHhhhcccccCCCCchHHHHHHHhcccCCCC--CCCcCCCCcccccccccccccchhhccccCCCCCcccccCC
Q 022965 164 MVNSLRKTWQRNSKRWNKDKPFVENVANLLETQLPRP--PEHENNYQQVECGICYAQFLPIDEELGAKSGGGTDYTCDNS 241 (289)
Q Consensus 164 ~v~~lr~~l~~n~~~Wd~~~~i~~NL~~il~~~~P~~--~~~~~~~~~~eC~ICy~~~l~~d~~~~~~~g~~Pd~~C~n~ 241 (289)
.|.+|.+.+.++...|--=..=.+++.++...---.. +.........-|+|||..- +.|.-+
T Consensus 253 ~v~qLke~l~~d~vsy~gCcek~el~d~vtrl~k~~~g~~~~~s~~~~~LC~ICmDaP----------------~DCvfL 316 (350)
T KOG4275|consen 253 TVRQLKEILDDDFVSYKGCCEKYELDDRVTRLYKGNDGEQHSRSLATRRLCAICMDAP----------------RDCVFL 316 (350)
T ss_pred hHHHhhhhhhccCCcccchhHHHHHHHHHHHHHhcccccccccchhHHHHHHHHhcCC----------------cceEEe
Confidence 4889999888888888544445566666655321111 1111122367899999852 357788
Q ss_pred CCCCcchhhHHHHHHhhhccCccccccccCCCCCCCccc
Q 022965 242 SCSKAFHSVCLGDWLRSITTTRQSYDVLFGNCPYCSEPV 280 (289)
Q Consensus 242 ~C~h~FH~~CL~eWL~~l~~~r~sF~~i~g~CP~Cr~~i 280 (289)
.|||.- .|-.= ++| -..||.||+.|
T Consensus 317 eCGHmV--tCt~C------Gkr------m~eCPICRqyi 341 (350)
T KOG4275|consen 317 ECGHMV--TCTKC------GKR------MNECPICRQYI 341 (350)
T ss_pred ecCcEE--eehhh------ccc------cccCchHHHHH
Confidence 888863 34311 222 35999999976
No 91
>COG5183 SSM4 Protein involved in mRNA turnover and stability [RNA processing and modification]
Probab=80.69 E-value=1.4 Score=47.67 Aligned_cols=55 Identities=27% Similarity=0.595 Sum_probs=38.6
Q ss_pred CcccccccccccccchhhccccCCCCCcccccCCCCC---CcchhhHHHHHHhhhccCccccccccCCCCCCCcccccc
Q 022965 208 QQVECGICYAQFLPIDEELGAKSGGGTDYTCDNSSCS---KAFHSVCLGDWLRSITTTRQSYDVLFGNCPYCSEPVAVK 283 (289)
Q Consensus 208 ~~~eC~ICy~~~l~~d~~~~~~~g~~Pd~~C~n~~C~---h~FH~~CL~eWL~~l~~~r~sF~~i~g~CP~Cr~~i~~~ 283 (289)
+...|-||..+-.+ | +..|.--||. +..|+.||.||+.- +. .-.|-.|..++..|
T Consensus 11 d~~~CRICr~e~~~-d-----------~pLfhPCKC~GSIkYiH~eCL~eW~~~--s~-------~~kCdiChy~~~Fk 68 (1175)
T COG5183 11 DKRSCRICRTEDIR-D-----------DPLFHPCKCSGSIKYIHRECLMEWMEC--SG-------TKKCDICHYEYKFK 68 (1175)
T ss_pred cchhceeecCCCCC-C-----------CcCcccccccchhHHHHHHHHHHHHhc--CC-------Ccceeeecceeeee
Confidence 44789999986331 1 1235444665 57899999999984 22 35899999987765
No 92
>KOG3899 consensus Uncharacterized conserved protein [Function unknown]
Probab=80.12 E-value=6.9 Score=37.95 Aligned_cols=46 Identities=22% Similarity=0.552 Sum_probs=32.9
Q ss_pred cccCCCCCCcchhhHHHHHHhhhccC--ccccccccCCCCCCCccccc
Q 022965 237 TCDNSSCSKAFHSVCLGDWLRSITTT--RQSYDVLFGNCPYCSEPVAV 282 (289)
Q Consensus 237 ~C~n~~C~h~FH~~CL~eWL~~l~~~--r~sF~~i~g~CP~Cr~~i~~ 282 (289)
-|.|--|.-..-..||..|+.+-.+. |.-+.--..+||+||++.-+
T Consensus 319 ~c~nc~crp~wc~~cla~~f~~rq~~v~r~~~~~~~~~cp~cr~~fci 366 (381)
T KOG3899|consen 319 PCENCICRPLWCRSCLAQIFIGRQDNVYRYEYHRGSAQCPTCRKNFCI 366 (381)
T ss_pred cccccccccHHHHHHHHHHHhhcccchhHHHHHhcCCCCcchhhceEE
Confidence 48888899999999999999761111 11233446899999997644
No 93
>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=76.96 E-value=1.2 Score=42.95 Aligned_cols=51 Identities=22% Similarity=0.413 Sum_probs=39.3
Q ss_pred CcccccccccccccchhhccccCCCCCcccccCCCCCCcchhhHHHHHHhhhccCccccccccCCCCCCCcccccccc
Q 022965 208 QQVECGICYAQFLPIDEELGAKSGGGTDYTCDNSSCSKAFHSVCLGDWLRSITTTRQSYDVLFGNCPYCSEPVAVKIS 285 (289)
Q Consensus 208 ~~~eC~ICy~~~l~~d~~~~~~~g~~Pd~~C~n~~C~h~FH~~CL~eWL~~l~~~r~sF~~i~g~CP~Cr~~i~~~~~ 285 (289)
....|.||-.+|.. | +- ++|+|.|-..|-..=++. ...|+.|.+++.--+.
T Consensus 240 ~Pf~c~icr~~f~~------------p--Vv--t~c~h~fc~~ca~~~~qk-----------~~~c~vC~~~t~g~~~ 290 (313)
T KOG1813|consen 240 LPFKCFICRKYFYR------------P--VV--TKCGHYFCEVCALKPYQK-----------GEKCYVCSQQTHGSFN 290 (313)
T ss_pred CCcccccccccccc------------c--hh--hcCCceeehhhhcccccc-----------CCcceecccccccccc
Confidence 44579999999861 2 22 899999999999877766 5799999998755443
No 94
>KOG3053 consensus Uncharacterized conserved protein [Function unknown]
Probab=76.39 E-value=2 Score=40.68 Aligned_cols=66 Identities=26% Similarity=0.492 Sum_probs=37.6
Q ss_pred CCCCcccccccccccccchhhccccCCCCCcccccCCCCCCcchhhHHHHHHhh--hccCccccccccCCCCCCCccccc
Q 022965 205 NNYQQVECGICYAQFLPIDEELGAKSGGGTDYTCDNSSCSKAFHSVCLGDWLRS--ITTTRQSYDVLFGNCPYCSEPVAV 282 (289)
Q Consensus 205 ~~~~~~eC~ICy~~~l~~d~~~~~~~g~~Pd~~C~n~~C~h~FH~~CL~eWL~~--l~~~r~sF~~i~g~CP~Cr~~i~~ 282 (289)
+-+.+.-|=||+.. |++++-..=--| =.|.. =.|=-|++||+.|+.. .-+..| .-.||.|+..-..
T Consensus 16 ~~e~eR~CWiCF~T----deDn~~a~WV~P-CrCRG--t~KWVHqsCL~rWiDEK~~~n~~q-----~V~C~QCqTEYii 83 (293)
T KOG3053|consen 16 NQELERCCWICFAT----DEDNRLAAWVHP-CRCRG--TTKWVHQSCLSRWIDEKQRGNPLQ-----TVSCPQCQTEYII 83 (293)
T ss_pred ccccceeEEEEecc----Ccccchhhhccc-ccccC--ccHHHHHHHHHHHHhHHhcCCCCc-----eeechhhcchhee
Confidence 34566789999985 222110000012 11211 1467899999999954 112233 4689999986544
No 95
>KOG4718 consensus Non-SMC (structural maintenance of chromosomes) element 1 protein (NSE1) [Chromatin structure and dynamics]
Probab=76.24 E-value=1.6 Score=40.31 Aligned_cols=50 Identities=22% Similarity=0.644 Sum_probs=40.2
Q ss_pred CcccccccccccccchhhccccCCCCCcccccCCCCCCcchhhHHHHHHhhhccCccccccccCCCCCCCcccccc
Q 022965 208 QQVECGICYAQFLPIDEELGAKSGGGTDYTCDNSSCSKAFHSVCLGDWLRSITTTRQSYDVLFGNCPYCSEPVAVK 283 (289)
Q Consensus 208 ~~~eC~ICy~~~l~~d~~~~~~~g~~Pd~~C~n~~C~h~FH~~CL~eWL~~l~~~r~sF~~i~g~CP~Cr~~i~~~ 283 (289)
..-.|.+|-+-.. -+..| +.||-.+|..|+-+.|++ -..||.|..-++-.
T Consensus 180 nlk~Cn~Ch~LvI-------------qg~rC--g~c~i~~h~~c~qty~q~-----------~~~cphc~d~w~h~ 229 (235)
T KOG4718|consen 180 NLKNCNLCHCLVI-------------QGIRC--GSCNIQYHRGCIQTYLQR-----------RDICPHCGDLWTHP 229 (235)
T ss_pred HHHHHhHhHHHhh-------------eeecc--CcccchhhhHHHHHHhcc-----------cCcCCchhcccCcc
Confidence 4568999998754 46789 789999999999999998 57999997654443
No 96
>KOG0420 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=75.86 E-value=10 Score=34.03 Aligned_cols=54 Identities=17% Similarity=0.399 Sum_probs=36.1
Q ss_pred eEEEEEEeC----CCCEEEEEEEeCCCCCCCCCCcccc--CCC------------ccccccCccccHHHHHH
Q 022965 40 FLSFRVIDK----KGRVHCMEIQLDKNYPRSPPSISAD--VPY------------IFNLKWSRKSRLKDLLQ 93 (289)
Q Consensus 40 ~i~l~~~D~----~~R~H~l~i~l~~~yp~~~P~~~~d--lP~------------~f~l~w~~~s~L~~i~~ 93 (289)
.+++++.=. .|+....++++|..||++||-+.+- +=. .+...|.|.-.|.+|+.
T Consensus 61 ~~elti~PdEGyY~gGkf~F~~~v~~~Yp~~PPKVkCltkV~HPNId~~GnVCLnILRedW~P~lnL~sIi~ 132 (184)
T KOG0420|consen 61 EFELTITPDEGYYQGGKFRFKFKVPNAYPHEPPKVKCLTKVYHPNIDLDGNVCLNILREDWRPVLNLNSIIY 132 (184)
T ss_pred eEEEEEccCcceecCceEEEEEECCCCCCCCCCeeeeeeccccCCcCCcchHHHHHHHhcCccccchHHHHH
Confidence 477777644 3578899999999999999987532 111 11125887666766554
No 97
>KOG0422 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=74.02 E-value=16 Score=31.85 Aligned_cols=83 Identities=22% Similarity=0.336 Sum_probs=56.6
Q ss_pred HHHHHHHHHhccceee------eecCCcceEEEEEEeCC----CCEEEEEEEeCCCCCCCCCCc---------------c
Q 022965 17 RSVYSEIEEVGWEHLV------RLSEDLKFLSFRVIDKK----GRVHCMEIQLDKNYPRSPPSI---------------S 71 (289)
Q Consensus 17 ~~l~~Ei~~igw~~l~------~id~~l~~i~l~~~D~~----~R~H~l~i~l~~~yp~~~P~~---------------~ 71 (289)
++|-+||..|.-.+.. ..+.++-.-+..+.-.+ .-...|+|.+|..||..||-+ -
T Consensus 5 ~Rl~kEL~dl~~~~~~~~rn~~~~e~nll~wt~llipd~ppY~kgaF~l~I~fp~eYPFKPP~i~f~tkiYHpNVDe~gq 84 (153)
T KOG0422|consen 5 RRLRKELADLQKNKMKFFRNIEVDEANLLKWTGLLIPDKPPYNKGAFRLEIDFPVEYPFKPPKIKFKTKIYHPNVDEKGQ 84 (153)
T ss_pred HHHHHHHHHHHhccHHHHhhhhcccccceeEEeEecCCCCCccCcceEEEeeCCCCCCCCCCeeeeeeeeccCCCCCCCc
Confidence 5788888888777653 23334444455444322 245678999999999888754 4
Q ss_pred ccCCCccccccCccccHHHHHHHHHHHH
Q 022965 72 ADVPYIFNLKWSRKSRLKDLLQQFREHL 99 (289)
Q Consensus 72 ~dlP~~f~l~w~~~s~L~~i~~qF~~~l 99 (289)
++||+.-.-.|-|-++..+|++-....|
T Consensus 85 vClPiis~EnWkP~T~teqVlqaLi~li 112 (153)
T KOG0422|consen 85 VCLPIISAENWKPATRTEQVLQALIALI 112 (153)
T ss_pred eeeeeeecccccCcccHHHHHHHHHHHh
Confidence 6788777779999888887776544443
No 98
>PF05743 UEV: UEV domain; InterPro: IPR008883 The N-terminal ubiquitin E2 variant (UEV) domain is ~145 amino acid residues in length and shows significant sequence similarity to E2 ubiquitin ligases but is unable to catalyze ubiquitin transfer as it lacks the active site cysteine that forms the transient thioester bond with the C terminus of ubiquitin (Ub). Nevertheless, at least some UEVs have retained the ability to bind Ub, and appear to act either as cofactors in ubiquitylation reactions, or as ubiquitin sensors. UEV domains also frequently contain other protein recognition motifs, and may generally serve to couple protein and Ub binding functions to facilitate the formation of multiprotein complexes [, , , ]. The UEV domain consists of a twisted four-stranded antiparallel beta-sheet having a meander topology, with four alpha-helices packed against one face of the sheet. The UEV fold is generally similar to canonical E2 ligases in the hydrophobic core and 'active site' regions, but differs significantly at both its N- and C-termini [, ]. The UEV domain is found in the eukaryotic tumour susceptibility gene 101 protein (TSG101). Altered transcripts of this gene have been detected in sporadic breast cancers and many other Homo sapiens malignancies. However, the involvement of this gene in neoplastic transformation and tumourigenesis is still elusive. TSG101 is required for normal cell function of embryonic and adult tissues but this gene is not a tumour suppressor for sporadic forms of breast cancer [].; GO: 0006464 protein modification process, 0015031 protein transport; PDB: 3R3Q_A 3R42_A 1UZX_A 3OBX_A 3OBS_A 3P9H_A 2F0R_A 3P9G_A 3OBQ_A 3OBU_A ....
Probab=73.39 E-value=4.6 Score=33.59 Aligned_cols=45 Identities=31% Similarity=0.505 Sum_probs=27.9
Q ss_pred EEEEEeCCCCCCCCCCccccCCCcccc------------------ccCc-cccHHHHHHHHHHH
Q 022965 54 CMEIQLDKNYPRSPPSISADVPYIFNL------------------KWSR-KSRLKDLLQQFREH 98 (289)
Q Consensus 54 ~l~i~l~~~yp~~~P~~~~dlP~~f~l------------------~w~~-~s~L~~i~~qF~~~ 98 (289)
-+.|-++.+||..+|.|.++....-.+ +|.. +|+|.++++...++
T Consensus 51 Pi~Iwlp~~yP~~pP~v~v~pt~~m~I~~~~~Vd~~G~v~~pyL~~W~~~~s~L~~lv~~l~~~ 114 (121)
T PF05743_consen 51 PICIWLPENYPYSPPIVYVRPTPSMVIKPSHHVDSNGRVYLPYLQNWNPPSSNLVDLVQELQAV 114 (121)
T ss_dssp EEEEEE-TTTTTSSSEEEE-GCCTECCGGCCCB-TTSBB-SHHHHT--TTTS-HHHHHHHHHHC
T ss_pred eEEEEEcccCCCCCCEEEEeCCCCCCcCCCCeECCCCCEeCchhccCCCCCCCHHHHHHHHHHH
Confidence 456667999999999999974432112 6887 67888887766543
No 99
>PF05773 RWD: RWD domain; InterPro: IPR006575 The RWD eukaryotic domain is found in RING finger (IPR001841 from INTERPRO) and WD repeat (IPR001680 from INTERPRO) containing proteins and DEXDc-like helicase (IPR001410 from INTERPRO) subfamily related to the ubiquitin-conjugating enzymes domain (IPR000608 from INTERPRO). ; GO: 0005515 protein binding; PDB: 2EBM_A 2EBK_A 2DAX_A 2DAW_A 2DAY_A 2DMF_A 1UKX_A 2YZ0_A.
Probab=73.02 E-value=7.5 Score=30.21 Aligned_cols=40 Identities=25% Similarity=0.375 Sum_probs=25.1
Q ss_pred CcceEEEEE-------EeCCCCEEEEEEEeCCCCCCCCCCccccCCC
Q 022965 37 DLKFLSFRV-------IDKKGRVHCMEIQLDKNYPRSPPSISADVPY 76 (289)
Q Consensus 37 ~l~~i~l~~-------~D~~~R~H~l~i~l~~~yp~~~P~~~~dlP~ 76 (289)
.-..+++++ .......-.|.+.+|.+||..+|.+.+.-+.
T Consensus 28 ~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~p~~YP~~~P~i~l~~~~ 74 (113)
T PF05773_consen 28 SPPSLEVKLDESSSSFESSSFPSVTLHFTLPPGYPESPPKISLESPK 74 (113)
T ss_dssp SSEEEEEEE--CEECCTTTTSEEEEEEEEE-SSTTSS--EEEEEEES
T ss_pred CCCceeeeecccccccccccceeEEEEEeCCCcCCCcCCEEEEEcCC
Confidence 355666666 2334456667788899999999998876554
No 100
>KOG0896 consensus Ubiquitin-conjugating enzyme E2 [Posttranslational modification, protein turnover, chaperones]
Probab=72.07 E-value=4.8 Score=34.62 Aligned_cols=55 Identities=16% Similarity=0.059 Sum_probs=42.5
Q ss_pred hHHhhhccceeecCCCCCCCc-----------------eeEEEEeCCceEEEEEEeCCCCCCCCceEEecCc
Q 022965 108 ILDEIDKSLWVIDLKNPSRAN-----------------VCRQINLGYNCIIMLSIHIDDPSSLPECRFMGSD 162 (289)
Q Consensus 108 ~ldeID~~~wVleP~~P~~~~-----------------~~RrI~l~~~~sl~i~vdp~~P~~lP~~~flG~~ 162 (289)
-|+++++-+|+|.|..-+... ..|-++=+.--||+|+-+|..|.+.|.++|.-..
T Consensus 10 lleele~g~kg~g~~~~s~gl~d~~dmtl~rWtg~IiGPprT~yEnRiysLKI~Cgp~YPe~PP~vrf~tki 81 (138)
T KOG0896|consen 10 LLEELEEGEKGIGDGTVSWGLEDDDDMTLTRWTGTIIGPPRTMYENRIYSLKIECGPKYPELPPTVRFGTKI 81 (138)
T ss_pred hhhhhccccccccCceeeccccCCCcceEeeeccceeCCCCcccccceeeEEEecCCCCCCCCceeEEEEEe
Confidence 578889999999998766432 2355665555699999999999999999986543
No 101
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=71.87 E-value=2.9 Score=45.23 Aligned_cols=59 Identities=14% Similarity=0.244 Sum_probs=44.1
Q ss_pred CcccccccccccccchhhccccCCCCCcccccCCCCCCcchhhHHHHHHhhhccCccccccccCCCCCCCccc
Q 022965 208 QQVECGICYAQFLPIDEELGAKSGGGTDYTCDNSSCSKAFHSVCLGDWLRSITTTRQSYDVLFGNCPYCSEPV 280 (289)
Q Consensus 208 ~~~eC~ICy~~~l~~d~~~~~~~g~~Pd~~C~n~~C~h~FH~~CL~eWL~~l~~~r~sF~~i~g~CP~Cr~~i 280 (289)
....|-||..++.+.+|.. -.|....|+|-|=-.||..|+..|..++. ...|++|.+-|
T Consensus 95 ~s~Ss~~C~~E~S~~~ds~---------~i~P~~~~~~~~CP~Ci~s~~DqL~~~~k-----~c~H~FC~~Ci 153 (1134)
T KOG0825|consen 95 ESDTSPVCEKEHSPDVDSS---------NICPVQTHVENQCPNCLKSCNDQLEESEK-----HTAHYFCEECV 153 (1134)
T ss_pred cccccchhheecCCccccc---------CcCchhhhhhhhhhHHHHHHHHHhhcccc-----ccccccHHHHh
Confidence 4456777777766322221 24656678999999999999999998887 88999998744
No 102
>smart00591 RWD domain in RING finger and WD repeat containing proteins and DEXDc-like helicases subfamily related to the UBCc domain.
Probab=71.13 E-value=39 Score=25.94 Aligned_cols=21 Identities=33% Similarity=0.629 Sum_probs=16.6
Q ss_pred EEEEEEeCCCCCCCCCCcccc
Q 022965 53 HCMEIQLDKNYPRSPPSISAD 73 (289)
Q Consensus 53 H~l~i~l~~~yp~~~P~~~~d 73 (289)
-.|.|++|.+||..+|.+..-
T Consensus 43 ~~l~~~~p~~YP~~~P~i~~~ 63 (107)
T smart00591 43 LTLQVKLPENYPDEAPPISLL 63 (107)
T ss_pred EEEEEECCCCCCCCCCCeEEE
Confidence 467788899999988877654
No 103
>KOG2660 consensus Locus-specific chromosome binding proteins [Function unknown]
Probab=70.44 E-value=1.5 Score=42.63 Aligned_cols=48 Identities=21% Similarity=0.601 Sum_probs=37.7
Q ss_pred CcccccccccccccchhhccccCCCCCcccccCCCCCCcchhhHHHHHHhhhccCccccccccCCCCCCCcccc
Q 022965 208 QQVECGICYAQFLPIDEELGAKSGGGTDYTCDNSSCSKAFHSVCLGDWLRSITTTRQSYDVLFGNCPYCSEPVA 281 (289)
Q Consensus 208 ~~~eC~ICy~~~l~~d~~~~~~~g~~Pd~~C~n~~C~h~FH~~CL~eWL~~l~~~r~sF~~i~g~CP~Cr~~i~ 281 (289)
....|++|--|+- | .-.| .-|=|.|=..||.+.|.. ...||.|.--|.
T Consensus 14 ~~itC~LC~GYli--D------ATTI-------~eCLHTFCkSCivk~l~~-----------~~~CP~C~i~ih 61 (331)
T KOG2660|consen 14 PHITCRLCGGYLI--D------ATTI-------TECLHTFCKSCIVKYLEE-----------SKYCPTCDIVIH 61 (331)
T ss_pred cceehhhccceee--c------chhH-------HHHHHHHHHHHHHHHHHH-----------hccCCccceecc
Confidence 5678999999985 1 1122 457899999999999998 689999987553
No 104
>KOG0424 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=69.86 E-value=11 Score=33.07 Aligned_cols=50 Identities=24% Similarity=0.579 Sum_probs=38.8
Q ss_pred CCEEEEEEEeCCCCCCCCCCccccCCCcccc-----------------ccCccccHHHHHHHHHHHHH
Q 022965 50 GRVHCMEIQLDKNYPRSPPSISADVPYIFNL-----------------KWSRKSRLKDLLQQFREHLE 100 (289)
Q Consensus 50 ~R~H~l~i~l~~~yp~~~P~~~~dlP~~f~l-----------------~w~~~s~L~~i~~qF~~~le 100 (289)
|-..-|++.+|.+||..||-|...-|+ |.. .|.+.-+|+.|+--.+..|+
T Consensus 55 Gg~y~l~v~F~~dyP~~PPkckF~~pl-~HPNVypsgtVcLsiL~e~~~W~paitikqiL~gIqdLL~ 121 (158)
T KOG0424|consen 55 GGLYKLTVNFPDDYPSSPPKCKFKPPL-FHPNVYPSGTVCLSILNEEKDWRPAITIKQILLGIQDLLD 121 (158)
T ss_pred CceEEEEEeCCccCCCCCCccccCCCC-cCCCcCCCCcEehhhhccccCCCchhhHHHHHHHHHHHhc
Confidence 456789999999999999999877664 211 39888888888877776664
No 105
>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]
Probab=68.31 E-value=3.4 Score=37.99 Aligned_cols=50 Identities=20% Similarity=0.465 Sum_probs=37.3
Q ss_pred CCCCcccccccccccccchhhccccCCCCCcccccCCCCCCcchhhHHHHHHhhhccCccccccccCCCCCCCcccc
Q 022965 205 NNYQQVECGICYAQFLPIDEELGAKSGGGTDYTCDNSSCSKAFHSVCLGDWLRSITTTRQSYDVLFGNCPYCSEPVA 281 (289)
Q Consensus 205 ~~~~~~eC~ICy~~~l~~d~~~~~~~g~~Pd~~C~n~~C~h~FH~~CL~eWL~~l~~~r~sF~~i~g~CP~Cr~~i~ 281 (289)
.++....|+||-..|. -|.. +.|||.|-..|...=.+. -.+|-.|.+..-
T Consensus 192 ~e~IPF~C~iCKkdy~------------spvv----t~CGH~FC~~Cai~~y~k-----------g~~C~~Cgk~t~ 241 (259)
T COG5152 192 GEKIPFLCGICKKDYE------------SPVV----TECGHSFCSLCAIRKYQK-----------GDECGVCGKATY 241 (259)
T ss_pred CCCCceeehhchhhcc------------chhh----hhcchhHHHHHHHHHhcc-----------CCcceecchhhc
Confidence 3456678999999874 1322 789999999998776665 578999987653
No 106
>KOG2879 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=65.74 E-value=8.9 Score=36.76 Aligned_cols=51 Identities=20% Similarity=0.360 Sum_probs=36.2
Q ss_pred CCcccccccccccccchhhccccCCCCCcccccCCCCCCcchhhHHHHHHhhhccCccccccccCCCCCCCcccc
Q 022965 207 YQQVECGICYAQFLPIDEELGAKSGGGTDYTCDNSSCSKAFHSVCLGDWLRSITTTRQSYDVLFGNCPYCSEPVA 281 (289)
Q Consensus 207 ~~~~eC~ICy~~~l~~d~~~~~~~g~~Pd~~C~n~~C~h~FH~~CL~eWL~~l~~~r~sF~~i~g~CP~Cr~~i~ 281 (289)
+...+|.+|-.. ..+|-. -.+|||.|=.-||..=+... . .=.||.|.++..
T Consensus 237 t~~~~C~~Cg~~------------PtiP~~---~~~C~HiyCY~Ci~ts~~~~----a-----sf~Cp~Cg~~~~ 287 (298)
T KOG2879|consen 237 TSDTECPVCGEP------------PTIPHV---IGKCGHIYCYYCIATSRLWD----A-----SFTCPLCGENVE 287 (298)
T ss_pred cCCceeeccCCC------------CCCCee---eccccceeehhhhhhhhcch----h-----hcccCccCCCCc
Confidence 466799999874 245643 36799999999997644431 1 139999999753
No 107
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=63.06 E-value=4.6 Score=41.55 Aligned_cols=45 Identities=31% Similarity=0.786 Sum_probs=34.1
Q ss_pred CCcccccccccccccchhhccccCCCCCcccccCCCCCCcchhhHHHHHHhhhccCccccccccCCCCCCCccccc
Q 022965 207 YQQVECGICYAQFLPIDEELGAKSGGGTDYTCDNSSCSKAFHSVCLGDWLRSITTTRQSYDVLFGNCPYCSEPVAV 282 (289)
Q Consensus 207 ~~~~eC~ICy~~~l~~d~~~~~~~g~~Pd~~C~n~~C~h~FH~~CL~eWL~~l~~~r~sF~~i~g~CP~Cr~~i~~ 282 (289)
+....|.|||..+ .+.+..|. |..|+.+|+.. ...||+|.+.+..
T Consensus 477 ~~~~~~~~~~~~~-----------------~~~~~~~~---~~~~l~~~~~~-----------~~~~pl~~~~~~~ 521 (543)
T KOG0802|consen 477 EPNDVCAICYQEM-----------------SARITPCS---HALCLRKWLYV-----------QEVCPLCHTYMKE 521 (543)
T ss_pred cccCcchHHHHHH-----------------Hhcccccc---chhHHHhhhhh-----------ccccCCCchhhhc
Confidence 4567899999875 12345565 99999999998 6789999876543
No 108
>PF13832 zf-HC5HC2H_2: PHD-zinc-finger like domain
Probab=62.87 E-value=5.9 Score=31.60 Aligned_cols=34 Identities=32% Similarity=0.752 Sum_probs=26.7
Q ss_pred CcccccccccccccchhhccccCCCCCcccccCCCCCCcchhhHHHH
Q 022965 208 QQVECGICYAQFLPIDEELGAKSGGGTDYTCDNSSCSKAFHSVCLGD 254 (289)
Q Consensus 208 ~~~eC~ICy~~~l~~d~~~~~~~g~~Pd~~C~n~~C~h~FH~~CL~e 254 (289)
....|.||-... | .-..|..+.|...||..|...
T Consensus 54 ~~~~C~iC~~~~-----------G--~~i~C~~~~C~~~fH~~CA~~ 87 (110)
T PF13832_consen 54 FKLKCSICGKSG-----------G--ACIKCSHPGCSTAFHPTCARK 87 (110)
T ss_pred cCCcCcCCCCCC-----------c--eeEEcCCCCCCcCCCHHHHHH
Confidence 456899999862 2 235799999999999999855
No 109
>PF07800 DUF1644: Protein of unknown function (DUF1644); InterPro: IPR012866 This family consists of sequences found in a number of hypothetical plant proteins of unknown function. The region of interest contains nine highly conserved cysteine residues and is approximately 160 amino acids in length, which probably represent a zinc-binding domain.
Probab=62.58 E-value=11 Score=33.36 Aligned_cols=66 Identities=29% Similarity=0.507 Sum_probs=36.0
Q ss_pred cccccccccccccchhhcc----ccCCCCCcccccCCCCCCcchhhHHHHHHhhhccCcc----c---------------
Q 022965 209 QVECGICYAQFLPIDEELG----AKSGGGTDYTCDNSSCSKAFHSVCLGDWLRSITTTRQ----S--------------- 265 (289)
Q Consensus 209 ~~eC~ICy~~~l~~d~~~~----~~~g~~Pd~~C~n~~C~h~FH~~CL~eWL~~l~~~r~----s--------------- 265 (289)
+..|.||+++=. +--+- -+.|.-| .+|+.. .=|+.||...=++-....- +
T Consensus 2 d~~CpICme~PH--NAVLLlCSS~~kgcRp-ymc~Ts----~rhSNCLdqfkka~~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (162)
T PF07800_consen 2 DVTCPICMEHPH--NAVLLLCSSHEKGCRP-YMCDTS----YRHSNCLDQFKKAYGKSSSSSSQSSSSAPSDSSSSESSE 74 (162)
T ss_pred CccCceeccCCC--ceEEEEeccccCCccc-cccCCc----cchhHHHHHHHHHhcCCCCccccccccCcCCCccccccc
Confidence 468999999733 11110 0122222 344332 3599999987655332211 0
Q ss_pred -cccccCCCCCCCcccc
Q 022965 266 -YDVLFGNCPYCSEPVA 281 (289)
Q Consensus 266 -F~~i~g~CP~Cr~~i~ 281 (289)
=....-.||+||-.+.
T Consensus 75 ~~~~~~L~CPLCRG~V~ 91 (162)
T PF07800_consen 75 SQEQPELACPLCRGEVK 91 (162)
T ss_pred ccccccccCccccCcee
Confidence 1223568999998774
No 110
>KOG4692 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=60.36 E-value=7 Score=38.85 Aligned_cols=48 Identities=25% Similarity=0.497 Sum_probs=37.4
Q ss_pred CcccccccccccccchhhccccCCCCCcccccCCCCCCcchhhHHHHHHhhhccCccccccccCCCCCCCccccc
Q 022965 208 QQVECGICYAQFLPIDEELGAKSGGGTDYTCDNSSCSKAFHSVCLGDWLRSITTTRQSYDVLFGNCPYCSEPVAV 282 (289)
Q Consensus 208 ~~~eC~ICy~~~l~~d~~~~~~~g~~Pd~~C~n~~C~h~FH~~CL~eWL~~l~~~r~sF~~i~g~CP~Cr~~i~~ 282 (289)
++..|+|||+.-- + -.-.+|+|.=-..||..=|.. ...|=||+..+.-
T Consensus 421 Ed~lCpICyA~pi---------~-------Avf~PC~H~SC~~CI~qHlmN-----------~k~CFfCktTv~~ 468 (489)
T KOG4692|consen 421 EDNLCPICYAGPI---------N-------AVFAPCSHRSCYGCITQHLMN-----------CKRCFFCKTTVID 468 (489)
T ss_pred ccccCcceecccc---------h-------hhccCCCCchHHHHHHHHHhc-----------CCeeeEecceeee
Confidence 5668999998621 1 123789999999999998887 6799999987653
No 111
>COG1996 RPC10 DNA-directed RNA polymerase, subunit RPC10 (contains C4-type Zn-finger) [Transcription]
Probab=56.54 E-value=4.4 Score=29.08 Aligned_cols=34 Identities=32% Similarity=0.773 Sum_probs=23.1
Q ss_pred cccccCCCCCCcchhhHHHHHHhhhccCccccccccCCCCCCCcccccccc
Q 022965 235 DYTCDNSSCSKAFHSVCLGDWLRSITTTRQSYDVLFGNCPYCSEPVAVKIS 285 (289)
Q Consensus 235 d~~C~n~~C~h~FH~~CL~eWL~~l~~~r~sF~~i~g~CP~Cr~~i~~~~~ 285 (289)
...| .+||..| +=++. .+ --.||||...|-+|.-
T Consensus 6 ~Y~C--~~Cg~~~------~~~~~---~~------~irCp~Cg~rIl~K~R 39 (49)
T COG1996 6 EYKC--ARCGREV------ELDQE---TR------GIRCPYCGSRILVKER 39 (49)
T ss_pred EEEh--hhcCCee------ehhhc---cC------ceeCCCCCcEEEEecc
Confidence 3578 8899999 21222 11 3589999999888754
No 112
>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B.
Probab=55.43 E-value=13 Score=26.58 Aligned_cols=47 Identities=26% Similarity=0.627 Sum_probs=18.1
Q ss_pred ccccccccccchhhccccCCCCCcccccCCCCCCcchhhHHHHHHhhhccCccccccccCCCCCCCccc
Q 022965 212 CGICYAQFLPIDEELGAKSGGGTDYTCDNSSCSKAFHSVCLGDWLRSITTTRQSYDVLFGNCPYCSEPV 280 (289)
Q Consensus 212 C~ICy~~~l~~d~~~~~~~g~~Pd~~C~n~~C~h~FH~~CL~eWL~~l~~~r~sF~~i~g~CP~Cr~~i 280 (289)
|.+|.+.....| ..-.| | .||...=..| |.+.+.+. .|.||-||++-
T Consensus 1 cp~C~e~~d~~d------~~~~P---C---~Cgf~IC~~C---~~~i~~~~-------~g~CPgCr~~Y 47 (48)
T PF14570_consen 1 CPLCDEELDETD------KDFYP---C---ECGFQICRFC---YHDILENE-------GGRCPGCREPY 47 (48)
T ss_dssp -TTTS-B--CCC------TT--S---S---TTS----HHH---HHHHTTSS--------SB-TTT--B-
T ss_pred CCCcccccccCC------Ccccc---C---cCCCcHHHHH---HHHHHhcc-------CCCCCCCCCCC
Confidence 678888762111 11123 3 6776665555 44443322 69999999874
No 113
>PF00628 PHD: PHD-finger; InterPro: IPR019787 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the PHD (homeodomain) zinc finger domain [,], which is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in chromatin-mediated transcriptional regulation. The PHD finger motif is reminiscent of, but distinct from the C3HC4 type RING finger. The function of this domain is not yet known but in analogy with the LIM domain it could be involved in protein-protein interaction and be important for the assembly or activity of multicomponent complexes involved in transcriptional activation or repression. Alternatively, the interactions could be intra-molecular and be important in maintaining the structural integrity of the protein. In similarity to the RING finger and the LIM domain, the PHD finger is thought to bind two zinc ions. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0005515 protein binding; PDB: 3ZVY_A 2LGG_A 3SOW_A 3SOU_B 3ASL_A 3ASK_A 3ZVZ_B 3T6R_A 2LGK_A 3SOX_B ....
Probab=55.28 E-value=5.4 Score=27.38 Aligned_cols=30 Identities=30% Similarity=0.815 Sum_probs=21.1
Q ss_pred ccccccccccchhhccccCCCCCcccccCCCCCCcchhhHHHH
Q 022965 212 CGICYAQFLPIDEELGAKSGGGTDYTCDNSSCSKAFHSVCLGD 254 (289)
Q Consensus 212 C~ICy~~~l~~d~~~~~~~g~~Pd~~C~n~~C~h~FH~~CL~e 254 (289)
|.||.... ..-.-..| ..|+..||..|+.-
T Consensus 2 C~vC~~~~-----------~~~~~i~C--~~C~~~~H~~C~~~ 31 (51)
T PF00628_consen 2 CPVCGQSD-----------DDGDMIQC--DSCNRWYHQECVGP 31 (51)
T ss_dssp BTTTTSSC-----------TTSSEEEB--STTSCEEETTTSTS
T ss_pred CcCCCCcC-----------CCCCeEEc--CCCChhhCcccCCC
Confidence 78888831 11234679 47999999999954
No 114
>PF13717 zinc_ribbon_4: zinc-ribbon domain
Probab=55.21 E-value=7.6 Score=25.69 Aligned_cols=34 Identities=32% Similarity=0.710 Sum_probs=21.4
Q ss_pred ccccccccccccchhhccccCCCCCcccccCCCCCCcch
Q 022965 210 VECGICYAQFLPIDEELGAKSGGGTDYTCDNSSCSKAFH 248 (289)
Q Consensus 210 ~eC~ICy~~~l~~d~~~~~~~g~~Pd~~C~n~~C~h~FH 248 (289)
.+|.=|-..|. .+|+.-.+.|. ...| ++|||.|+
T Consensus 3 i~Cp~C~~~y~-i~d~~ip~~g~--~v~C--~~C~~~f~ 36 (36)
T PF13717_consen 3 ITCPNCQAKYE-IDDEKIPPKGR--KVRC--SKCGHVFF 36 (36)
T ss_pred EECCCCCCEEe-CCHHHCCCCCc--EEEC--CCCCCEeC
Confidence 46888888875 44442212222 4568 88999985
No 115
>PF04423 Rad50_zn_hook: Rad50 zinc hook motif; InterPro: IPR007517 The Mre11 complex (Mre11 Rad50 Nbs1) is central to chromosomal maintenance and functions in homologous recombination, telomere maintenance and sister chromatid association. The Rad50 coiled-coil region contains a dimer interface at the apex of the coiled coils in which pairs of conserved Cys-X-X-Cys motifs form interlocking hooks that bind one Zn ion. This alignment includes the zinc hook motif and a short stretch of coiled-coil on either side.; GO: 0004518 nuclease activity, 0005524 ATP binding, 0008270 zinc ion binding, 0006281 DNA repair; PDB: 1L8D_B.
Probab=55.20 E-value=5.9 Score=28.11 Aligned_cols=25 Identities=24% Similarity=0.686 Sum_probs=13.8
Q ss_pred hHHHHHHhhhccCccccccccCCCCCCCcccc
Q 022965 250 VCLGDWLRSITTTRQSYDVLFGNCPYCSEPVA 281 (289)
Q Consensus 250 ~CL~eWL~~l~~~r~sF~~i~g~CP~Cr~~i~ 281 (289)
.-+.+++..+.+. .|.||.|..+++
T Consensus 7 ~~~~k~i~~l~~~-------~~~CPlC~r~l~ 31 (54)
T PF04423_consen 7 EELKKYIEELKEA-------KGCCPLCGRPLD 31 (54)
T ss_dssp HHHHHHHHHHTT--------SEE-TTT--EE-
T ss_pred HHHHHHHHHHhcC-------CCcCCCCCCCCC
Confidence 3456666665544 569999999875
No 116
>PF13670 PepSY_2: Peptidase propeptide and YPEB domain This Prosite motif covers only the active site. This is family M4 in the peptidase classification.
Probab=54.63 E-value=56 Score=24.80 Aligned_cols=45 Identities=13% Similarity=0.178 Sum_probs=37.3
Q ss_pred HHHHHHHHHHhccceeeeecC-CcceEEEEEEeCCCCEEEEEEEeCC
Q 022965 16 SRSVYSEIEEVGWEHLVRLSE-DLKFLSFRVIDKKGRVHCMEIQLDK 61 (289)
Q Consensus 16 y~~l~~Ei~~igw~~l~~id~-~l~~i~l~~~D~~~R~H~l~i~l~~ 61 (289)
.+.+.+-+++-|| ++..+.- +=...++++.|..|+.+.+.|.-.+
T Consensus 31 ~~~~~~~l~~~G~-~v~~ve~~~~g~yev~~~~~dG~~~ev~vD~~t 76 (83)
T PF13670_consen 31 IEQAVAKLEAQGY-QVREVEFDDDGCYEVEARDKDGKKVEVYVDPAT 76 (83)
T ss_pred HHHHHHHHHhcCC-ceEEEEEcCCCEEEEEEEECCCCEEEEEEcCCC
Confidence 8899999999999 8877666 4445999999999999988886544
No 117
>PF13719 zinc_ribbon_5: zinc-ribbon domain
Probab=53.66 E-value=7.4 Score=25.80 Aligned_cols=34 Identities=26% Similarity=0.642 Sum_probs=21.4
Q ss_pred ccccccccccccchhhccccCCCCCcccccCCCCCCcch
Q 022965 210 VECGICYAQFLPIDEELGAKSGGGTDYTCDNSSCSKAFH 248 (289)
Q Consensus 210 ~eC~ICy~~~l~~d~~~~~~~g~~Pd~~C~n~~C~h~FH 248 (289)
..|.=|-..|.-.++.++...+ ...| ++|+|.|+
T Consensus 3 i~CP~C~~~f~v~~~~l~~~~~---~vrC--~~C~~~f~ 36 (37)
T PF13719_consen 3 ITCPNCQTRFRVPDDKLPAGGR---KVRC--PKCGHVFR 36 (37)
T ss_pred EECCCCCceEEcCHHHcccCCc---EEEC--CCCCcEee
Confidence 4688888877533333432222 3568 89999996
No 118
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=52.31 E-value=13 Score=36.88 Aligned_cols=52 Identities=25% Similarity=0.455 Sum_probs=31.8
Q ss_pred CCcccccccccccccchhhccccCCCCCcccccCCCCCCcchhhHHHHHHhhhccCccccccccCCCCCCCccc
Q 022965 207 YQQVECGICYAQFLPIDEELGAKSGGGTDYTCDNSSCSKAFHSVCLGDWLRSITTTRQSYDVLFGNCPYCSEPV 280 (289)
Q Consensus 207 ~~~~eC~ICy~~~l~~d~~~~~~~g~~Pd~~C~n~~C~h~FH~~CL~eWL~~l~~~r~sF~~i~g~CP~Cr~~i 280 (289)
|++.-|..|.+.+- |.|+.-.--+||-..-+-|- -.- ||. +.|.||-||...
T Consensus 12 deed~cplcie~md------------itdknf~pc~cgy~ic~fc~---~~i----rq~---lngrcpacrr~y 63 (480)
T COG5175 12 DEEDYCPLCIEPMD------------ITDKNFFPCPCGYQICQFCY---NNI----RQN---LNGRCPACRRKY 63 (480)
T ss_pred cccccCcccccccc------------cccCCcccCCcccHHHHHHH---HHH----Hhh---ccCCChHhhhhc
Confidence 34445999999863 23333223478876655554 322 222 479999999854
No 119
>KOG0677 consensus Actin-related protein Arp2/3 complex, subunit Arp2 [Cytoskeleton]
Probab=49.82 E-value=11 Score=36.48 Aligned_cols=45 Identities=18% Similarity=0.301 Sum_probs=39.7
Q ss_pred hHHHHHHHHHHHhccceeeeecCC-cceEEEEEEeCCCCEEEEEEE
Q 022965 14 SFSRSVYSEIEEVGWEHLVRLSED-LKFLSFRVIDKKGRVHCMEIQ 58 (289)
Q Consensus 14 ~~y~~l~~Ei~~igw~~l~~id~~-l~~i~l~~~D~~~R~H~l~i~ 58 (289)
..=|+|=+||.++--+++.+-|++ |+.+++++.|.-.|+|++-+-
T Consensus 309 GLPSRLEkElkqlyl~rVL~~d~~~l~KfkiRIEdPPrRKhMVflG 354 (389)
T KOG0677|consen 309 GLPSRLEKELKQLYLDRVLKGDTDKLKKFKIRIEDPPRRKHMVFLG 354 (389)
T ss_pred CCcHHHHHHHHHHHHHHHHcCChhhhhheEEeccCCCccceeEEEc
Confidence 335789999999999999988886 999999999999999998664
No 120
>PF11023 DUF2614: Protein of unknown function (DUF2614); InterPro: IPR020912 This entry describes proteins of unknown function, which are thought to be membrane proteins.; GO: 0005887 integral to plasma membrane
Probab=48.86 E-value=12 Score=31.32 Aligned_cols=35 Identities=29% Similarity=0.663 Sum_probs=24.1
Q ss_pred CCcccccCCCCCCcchhhHHHHHHhhhccCccccccccCCCCCCCccccccccc
Q 022965 233 GTDYTCDNSSCSKAFHSVCLGDWLRSITTTRQSYDVLFGNCPYCSEPVAVKISI 286 (289)
Q Consensus 233 ~Pd~~C~n~~C~h~FH~~CL~eWL~~l~~~r~sF~~i~g~CP~Cr~~i~~~~~~ 286 (289)
.+...| +.|++..- =| +| ...|+||++|+++.-+.
T Consensus 67 av~V~C--P~C~K~TK------mL-----Gr------~D~CM~C~~pLTLd~~l 101 (114)
T PF11023_consen 67 AVQVEC--PNCGKQTK------ML-----GR------VDACMHCKEPLTLDPSL 101 (114)
T ss_pred ceeeEC--CCCCChHh------hh-----ch------hhccCcCCCcCccCchh
Confidence 356678 77988642 22 22 36999999999987554
No 121
>KOG1829 consensus Uncharacterized conserved protein, contains C1, PH and RUN domains [Signal transduction mechanisms]
Probab=48.51 E-value=7 Score=40.93 Aligned_cols=17 Identities=41% Similarity=0.938 Sum_probs=14.5
Q ss_pred ccccCCCCCCcchhhHHHH
Q 022965 236 YTCDNSSCSKAFHSVCLGD 254 (289)
Q Consensus 236 ~~C~n~~C~h~FH~~CL~e 254 (289)
..| ..|++.||..|+..
T Consensus 532 ~rC--~~C~avfH~~C~~r 548 (580)
T KOG1829|consen 532 RRC--STCLAVFHKKCLRR 548 (580)
T ss_pred eeH--HHHHHHHHHHHHhc
Confidence 678 78999999999943
No 122
>KOG0416 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=47.40 E-value=28 Score=31.25 Aligned_cols=40 Identities=25% Similarity=0.457 Sum_probs=31.4
Q ss_pred eeecCCcceEEEEEEeCC-----CCEEEEEEEeCCCCCCCCCCcc
Q 022965 32 VRLSEDLKFLSFRVIDKK-----GRVHCMEIQLDKNYPRSPPSIS 71 (289)
Q Consensus 32 ~~id~~l~~i~l~~~D~~-----~R~H~l~i~l~~~yp~~~P~~~ 71 (289)
.-++.+.+.+.+++...+ |-.-.|.|.||.+||...|++.
T Consensus 23 ~~ind~m~ef~V~f~GP~ds~YegGvWkv~V~lPd~YP~KSPSIG 67 (189)
T KOG0416|consen 23 TIINDGMQEFYVKFHGPKDSPYEGGVWKVRVELPDNYPFKSPSIG 67 (189)
T ss_pred EEecCcccEEEEEeeCCCCCcccCceEEEEEECCCCCCCCCCccc
Confidence 334445898888887654 4677899999999999999886
No 123
>KOG0419 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=46.85 E-value=48 Score=28.73 Aligned_cols=85 Identities=14% Similarity=0.355 Sum_probs=48.7
Q ss_pred HHHHHHHHHHHhccceeeeec-----CCcceEEEEEEeC-----CCCEEEEEEEeCCCCCCCCCCcc-ccCCCcccc---
Q 022965 15 FSRSVYSEIEEVGWEHLVRLS-----EDLKFLSFRVIDK-----KGRVHCMEIQLDKNYPRSPPSIS-ADVPYIFNL--- 80 (289)
Q Consensus 15 ~y~~l~~Ei~~igw~~l~~id-----~~l~~i~l~~~D~-----~~R~H~l~i~l~~~yp~~~P~~~-~dlP~~f~l--- 80 (289)
-|.+|+.+...+.-+.-.-|+ .++=.-.-.|+.- .|-...|+|+++..||..||.+. +.-+...++
T Consensus 5 ArrrLmrDfkrlqedpp~gisa~P~~~niM~W~a~I~Gp~~tp~e~gtFkLtl~FteeYpnkPP~VrFvs~mFHPNvya~ 84 (152)
T KOG0419|consen 5 ARRRLMRDFKRLQEDPPAGISAAPVENNIMEWNAVIFGPQDTPFEGGTFKLTLEFTEEYPNKPPTVRFVSKMFHPNVYAD 84 (152)
T ss_pred HHHHHHHHHHHhhcCCCCCccCCCCccceeeeeeeEEcCCCCCcCCceEEEEEEcccccCCCCCeeEeeeeccCCCcCCC
Confidence 356777777776655433322 2233333333322 24567788999999999999886 333332222
Q ss_pred ----------ccCccccHHHHHHHHHHHH
Q 022965 81 ----------KWSRKSRLKDLLQQFREHL 99 (289)
Q Consensus 81 ----------~w~~~s~L~~i~~qF~~~l 99 (289)
+|++.-.+..|+...|..|
T Consensus 85 G~iClDiLqNrWsp~Ydva~ILtsiQslL 113 (152)
T KOG0419|consen 85 GSICLDILQNRWSPTYDVASILTSIQSLL 113 (152)
T ss_pred CcchHHHHhcCCCCchhHHHHHHHHHHHh
Confidence 6877555665555444443
No 124
>smart00249 PHD PHD zinc finger. The plant homeodomain (PHD) finger is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in epigenetics and chromatin-mediated transcriptional regulation. The PHD finger binds two zinc ions using the so-called 'cross-brace' motif and is thus structurally related to the KOG0421 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=44.05 E-value=41 Score=29.54 Aligned_cols=27 Identities=26% Similarity=0.544 Sum_probs=22.3
Q ss_pred CCEEEEEEEeCCCCCCCCCCccccCCC
Q 022965 50 GRVHCMEIQLDKNYPRSPPSISADVPY 76 (289)
Q Consensus 50 ~R~H~l~i~l~~~yp~~~P~~~~dlP~ 76 (289)
|-+..|.+++|.+||..||.+..--|+
T Consensus 75 gl~yklSl~Fp~~YPy~pP~vkFltpc 101 (175)
T KOG0421|consen 75 GLKYKLSLSFPNNYPYKPPTVKFLTPC 101 (175)
T ss_pred CcEEEEEEecCCCCCCCCCeeEeeccc
Confidence 456678899999999999999877673
No 126
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=43.07 E-value=18 Score=39.11 Aligned_cols=31 Identities=23% Similarity=0.554 Sum_probs=25.0
Q ss_pred ccccCCCCCCcchhhHHHHHHhhhccCccccccccCCCCC--CCcc
Q 022965 236 YTCDNSSCSKAFHSVCLGDWLRSITTTRQSYDVLFGNCPY--CSEP 279 (289)
Q Consensus 236 ~~C~n~~C~h~FH~~CL~eWL~~l~~~r~sF~~i~g~CP~--Cr~~ 279 (289)
..| ..|||.-|..|+++|+.. ...||. |-.+
T Consensus 794 ~~c--~~C~H~gH~sh~~sw~~~-----------~s~ca~~~C~~~ 826 (839)
T KOG0269|consen 794 VWC--QVCGHGGHDSHLKSWFFK-----------ASPCAKSICPHL 826 (839)
T ss_pred eec--ccccccccHHHHHHHHhc-----------CCCCccccCCcc
Confidence 456 789999999999999998 567776 5543
No 127
>PF06750 DiS_P_DiS: Bacterial Peptidase A24 N-terminal domain; InterPro: IPR010627 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This domain is found at the N terminus of bacterial aspartic peptidases belonging to MEROPS peptidase family A24 (clan AD), subfamily A24A (type IV prepilin peptidase, IPR000045 from INTERPRO). It's function has not been specifically determined; however some of the family have been characterised as bifunctional [], and this domain may contain the N-methylation activity. The domain consists of an intracellular region between a pair of transmembrane domains. This intracellular region contains an invariant proline and four conserved cysteines. These Cys residues are arranged in a two-pair motif, with the Cys residues of a pair separated (usually) by 2 aa and with each pair separated by 21 largely hydrophilic residues (C-X-X-C...X21...C-X-X-C); they have been shown to be essential to the overall function of the enzyme [, ]. The bifunctional enzyme prepilin peptidase (PilD) from Pseudomonas aeruginosa is a key determinant in both type-IV pilus biogenesis and extracellular protein secretion, in its roles as a leader peptidase and methyl transferase (MTase). It is responsible for endopeptidic cleavage of the unique leader peptides that characterise type-IV pilin precursors, as well as proteins with homologous leader sequences that are essential components of the general secretion pathway found in a variety of Gram-negative pathogens. Following removal of the leader peptides, the same enzyme is responsible for the second posttranslational modification that characterises the type-IV pilins and their homologues, namely N-methylation of the newly exposed N-terminal amino acid residue [].
Probab=40.78 E-value=21 Score=28.43 Aligned_cols=37 Identities=22% Similarity=0.640 Sum_probs=23.7
Q ss_pred CcccccCCCCCCcc---hhhHHHHHHhhhccCccccccccCCCCCCCcccccc
Q 022965 234 TDYTCDNSSCSKAF---HSVCLGDWLRSITTTRQSYDVLFGNCPYCSEPVAVK 283 (289)
Q Consensus 234 Pd~~C~n~~C~h~F---H~~CL~eWL~~l~~~r~sF~~i~g~CP~Cr~~i~~~ 283 (289)
|-..| ..|+|.. +.-=|.-||-. .|.|.+|+++|+..
T Consensus 32 ~rS~C--~~C~~~L~~~~lIPi~S~l~l-----------rGrCr~C~~~I~~~ 71 (92)
T PF06750_consen 32 PRSHC--PHCGHPLSWWDLIPILSYLLL-----------RGRCRYCGAPIPPR 71 (92)
T ss_pred CCCcC--cCCCCcCcccccchHHHHHHh-----------CCCCcccCCCCChH
Confidence 33445 4455542 22335667766 89999999999764
No 128
>PF13771 zf-HC5HC2H: PHD-like zinc-binding domain
Probab=40.43 E-value=16 Score=27.88 Aligned_cols=32 Identities=31% Similarity=0.811 Sum_probs=25.4
Q ss_pred ccccccccccccchhhccccCCCCCcccccCCCCCCcchhhHHHH
Q 022965 210 VECGICYAQFLPIDEELGAKSGGGTDYTCDNSSCSKAFHSVCLGD 254 (289)
Q Consensus 210 ~eC~ICy~~~l~~d~~~~~~~g~~Pd~~C~n~~C~h~FH~~CL~e 254 (289)
..|.+|-... | .-..|....|...||..|..+
T Consensus 37 ~~C~~C~~~~-----------G--a~i~C~~~~C~~~fH~~CA~~ 68 (90)
T PF13771_consen 37 LKCSICKKKG-----------G--ACIGCSHPGCSRSFHVPCARK 68 (90)
T ss_pred CCCcCCCCCC-----------C--eEEEEeCCCCCcEEChHHHcc
Confidence 4799998652 2 245799999999999999865
No 129
>KOG0956 consensus PHD finger protein AF10 [General function prediction only]
Probab=39.44 E-value=15 Score=39.49 Aligned_cols=42 Identities=33% Similarity=0.622 Sum_probs=29.4
Q ss_pred CCCcccccccccccccchhhccccCCCCCcccccCCCCCCcchhhHHH
Q 022965 206 NYQQVECGICYAQFLPIDEELGAKSGGGTDYTCDNSSCSKAFHSVCLG 253 (289)
Q Consensus 206 ~~~~~eC~ICy~~~l~~d~~~~~~~g~~Pd~~C~n~~C~h~FH~~CL~ 253 (289)
|-+...|=||-+.=.+ ..+..|. =..|+...|.+.||..|--
T Consensus 114 dRfnKtCYIC~E~Grp----nkA~~GA--CMtCNKs~CkqaFHVTCAQ 155 (900)
T KOG0956|consen 114 DRFNKTCYICNEEGRP----NKAAKGA--CMTCNKSGCKQAFHVTCAQ 155 (900)
T ss_pred hhhcceeeeecccCCc----ccccccc--ceecccccchhhhhhhHhh
Confidence 3467799999987221 2222332 3579999999999999974
No 130
>KOG3821 consensus Heparin sulfate cell surface proteoglycan [Signal transduction mechanisms]
Probab=37.57 E-value=67 Score=33.65 Aligned_cols=78 Identities=18% Similarity=0.351 Sum_probs=54.4
Q ss_pred ccCc-cccHHHHHHHHHHHHHHHHHHHHhHHh----------hhccceeecCCCCCCCceeEEEEeCCceEEEEEEe--C
Q 022965 81 KWSR-KSRLKDLLQQFREHLEKLQEIWNILDE----------IDKSLWVIDLKNPSRANVCRQINLGYNCIIMLSIH--I 147 (289)
Q Consensus 81 ~w~~-~s~L~~i~~qF~~~le~lq~fwd~lde----------ID~~~wVleP~~P~~~~~~RrI~l~~~~sl~i~vd--p 147 (289)
.|+. ..+|...+..|.+-|.+.+.||..|-+ -|..|| +-...- =+++-.|+ +
T Consensus 370 ~~~~~~~~L~~~~~e~~~kL~~~k~F~~~Lp~~lC~~~~~a~~e~~CW-----NG~~~g----------rY~~~vv~~G~ 434 (563)
T KOG3821|consen 370 PTTAAGTTLDRLVTEFKEKLKLSKSFWSSLPDTLCSMAAGASNEERCW-----NGTGVG----------RYLQPVVGNGL 434 (563)
T ss_pred CcCCCcchHHHHHHHHHHHHHHHHHHHHhhhHHHhcccccccCCCccc-----CCcccc----------cccHhhhCCcc
Confidence 4543 467999999999999999999998843 345555 111111 14444555 7
Q ss_pred CCCCCCCceEEecCchhhhHHHHHhh
Q 022965 148 DDPSSLPECRFMGSDPMVNSLRKTWQ 173 (289)
Q Consensus 148 ~~P~~lP~~~flG~~~~v~~lr~~l~ 173 (289)
.++..-||+.+-|+...++..++++.
T Consensus 435 ~nQ~nNPEv~vd~~~p~~~~~~~~lk 460 (563)
T KOG3821|consen 435 ANQFNNPEVKVDASKPDGNIIEQILK 460 (563)
T ss_pred ccccCCCcCCcCCcCCchHHHHHHHH
Confidence 78889999888888877776665553
No 131
>PF04710 Pellino: Pellino; InterPro: IPR006800 Pellino is involved in Toll-like signalling pathways, and associates with the kinase domain of the Pelle Ser/Thr kinase [, , ].; PDB: 3EGB_B 3EGA_A.
Probab=37.48 E-value=11 Score=37.80 Aligned_cols=70 Identities=14% Similarity=0.409 Sum_probs=0.0
Q ss_pred Ccccccccccccccchhhccc-----cCCCCCcccccCCCCCCcchhhHHHHHHh-hhccCccccccccCCCCCCCcccc
Q 022965 208 QQVECGICYAQFLPIDEELGA-----KSGGGTDYTCDNSSCSKAFHSVCLGDWLR-SITTTRQSYDVLFGNCPYCSEPVA 281 (289)
Q Consensus 208 ~~~eC~ICy~~~l~~d~~~~~-----~~g~~Pd~~C~n~~C~h~FH~~CL~eWL~-~l~~~r~sF~~i~g~CP~Cr~~i~ 281 (289)
...+|.+|...-.-..=-+|. .+...|... -..|||.--.....-|-+ .||.....| +..||+|-.++.
T Consensus 327 ~~r~CPlCr~~g~~V~L~mG~E~afyvD~~~ptha--F~PCGHv~SekTa~yWs~i~lPhGt~~f---~a~CPFCa~~L~ 401 (416)
T PF04710_consen 327 RSRTCPLCRQVGPYVPLWMGCEPAFYVDSGPPTHA--FNPCGHVCSEKTAKYWSQIPLPHGTHAF---HAACPFCATPLD 401 (416)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccCCCccccCCceeEeeccccceeecCCCCcee--ecccccccchhhhhhhhcCCCCCCcccc---cccCCcccCccc
Confidence 478999999752210000110 011234332 358999999999999997 567666666 789999999986
Q ss_pred c
Q 022965 282 V 282 (289)
Q Consensus 282 ~ 282 (289)
.
T Consensus 402 g 402 (416)
T PF04710_consen 402 G 402 (416)
T ss_dssp -
T ss_pred C
Confidence 4
No 132
>PF13901 DUF4206: Domain of unknown function (DUF4206)
Probab=36.99 E-value=13 Score=33.46 Aligned_cols=25 Identities=32% Similarity=1.031 Sum_probs=20.3
Q ss_pred ccccCCCCCCcchhhHHHHHHhhhccCccccccccCCCCCCCc
Q 022965 236 YTCDNSSCSKAFHSVCLGDWLRSITTTRQSYDVLFGNCPYCSE 278 (289)
Q Consensus 236 ~~C~n~~C~h~FH~~CL~eWL~~l~~~r~sF~~i~g~CP~Cr~ 278 (289)
..| .+|+..||..|..+ ..||=|..
T Consensus 173 ~~C--~~C~~v~H~~C~~~----------------~~CpkC~R 197 (202)
T PF13901_consen 173 VRC--PKCKSVFHKSCFRK----------------KSCPKCAR 197 (202)
T ss_pred eeC--CcCccccchhhcCC----------------CCCCCcHh
Confidence 468 88999999999952 47999964
No 133
>PF14255 Cys_rich_CPXG: Cysteine-rich CPXCG
Probab=36.60 E-value=15 Score=26.48 Aligned_cols=13 Identities=54% Similarity=1.505 Sum_probs=10.2
Q ss_pred CCCCCCccccccc
Q 022965 272 NCPYCSEPVAVKI 284 (289)
Q Consensus 272 ~CP~Cr~~i~~~~ 284 (289)
.||||.+++.+-+
T Consensus 2 ~CPyCge~~~~~i 14 (52)
T PF14255_consen 2 QCPYCGEPIEILI 14 (52)
T ss_pred CCCCCCCeeEEEE
Confidence 6999999887654
No 134
>PF04641 Rtf2: Rtf2 RING-finger
Probab=36.57 E-value=26 Score=32.64 Aligned_cols=121 Identities=16% Similarity=0.295 Sum_probs=66.8
Q ss_pred eEEEEeCCceEEEEEEeCCCCCCCCc-eEEecCc----hhhhHHHHHhhhccc-ccCCCCchHHHHHHHhcccCCCCC-C
Q 022965 130 CRQINLGYNCIIMLSIHIDDPSSLPE-CRFMGSD----PMVNSLRKTWQRNSK-RWNKDKPFVENVANLLETQLPRPP-E 202 (289)
Q Consensus 130 ~RrI~l~~~~sl~i~vdp~~P~~lP~-~~flG~~----~~v~~lr~~l~~n~~-~Wd~~~~i~~NL~~il~~~~P~~~-~ 202 (289)
..+.+...+|.|..+ |+ ..|. +.-+|.= ..+.-|.+ .... .=.....=+..|.++.++.|-.-. .
T Consensus 28 ~~~~~~w~~CaLS~~--pL---~~PiV~d~~G~LynKeaile~Ll~---~~~~~~~~~~~~hI~~LKDl~~l~~~~n~~~ 99 (260)
T PF04641_consen 28 EEREARWTHCALSQQ--PL---EDPIVSDRLGRLYNKEAILEFLLD---KKKNKDLPKTFSHIKSLKDLVELKFTKNPSY 99 (260)
T ss_pred HHhhCCcCcccCcCC--cc---CCCeeeCCCCeeEcHHHHHHHHHh---cCcCCCCccccccccCccceeeEEeEecCcc
Confidence 345556678887554 55 4476 4667743 33333322 1111 001111112345666666543322 1
Q ss_pred -------CcCCCCcccccccccccccchhhccccCCCCCcccccCCCCCCcchhhHHHHHHhhhccCccccccccCCCCC
Q 022965 203 -------HENNYQQVECGICYAQFLPIDEELGAKSGGGTDYTCDNSSCSKAFHSVCLGDWLRSITTTRQSYDVLFGNCPY 275 (289)
Q Consensus 203 -------~~~~~~~~eC~ICy~~~l~~d~~~~~~~g~~Pd~~C~n~~C~h~FH~~CL~eWL~~l~~~r~sF~~i~g~CP~ 275 (289)
....++.-.|+|....+. |..+ .+ -.-.|||+|=..+|.+= .. ...||.
T Consensus 100 ~~~~~~~~~~~~~~~~CPvt~~~~~----------~~~~-fv-~l~~cG~V~s~~alke~-k~-----------~~~Cp~ 155 (260)
T PF04641_consen 100 KEEDKSSGDNSEGRFICPVTGKEFN----------GKHK-FV-YLRPCGCVFSEKALKEL-KK-----------SKKCPV 155 (260)
T ss_pred ccccccccccCCceeECCCCCcccC----------Ccee-EE-EEcCCCCEeeHHHHHhh-cc-----------cccccc
Confidence 112456778999998873 2222 22 34689999999999773 21 357999
Q ss_pred CCccccc
Q 022965 276 CSEPVAV 282 (289)
Q Consensus 276 Cr~~i~~ 282 (289)
|.++++-
T Consensus 156 c~~~f~~ 162 (260)
T PF04641_consen 156 CGKPFTE 162 (260)
T ss_pred cCCcccc
Confidence 9999763
No 135
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=36.50 E-value=29 Score=33.04 Aligned_cols=53 Identities=9% Similarity=0.126 Sum_probs=40.5
Q ss_pred CcccccccccccccchhhccccCCCCCcccccCCCCCCcchhhHHHHHHhhhccCccccccccCCCCCCCcccccc
Q 022965 208 QQVECGICYAQFLPIDEELGAKSGGGTDYTCDNSSCSKAFHSVCLGDWLRSITTTRQSYDVLFGNCPYCSEPVAVK 283 (289)
Q Consensus 208 ~~~eC~ICy~~~l~~d~~~~~~~g~~Pd~~C~n~~C~h~FH~~CL~eWL~~l~~~r~sF~~i~g~CP~Cr~~i~~~ 283 (289)
..-.|+||..... ..+|-. ...+|||.|-..|..+-++. -+.||.|.+|+.-+
T Consensus 220 ~ryiCpvtrd~Lt----------Nt~~ca--~Lr~sg~Vv~~ecvEklir~-----------D~v~pv~d~plkdr 272 (303)
T KOG3039|consen 220 KRYICPVTRDTLT----------NTTPCA--VLRPSGHVVTKECVEKLIRK-----------DMVDPVTDKPLKDR 272 (303)
T ss_pred cceecccchhhhc----------CccceE--EeccCCcEeeHHHHHHhccc-----------cccccCCCCcCccc
Confidence 3457999998864 123322 34789999999999998888 78999999988644
No 136
>smart00132 LIM Zinc-binding domain present in Lin-11, Isl-1, Mec-3. Zinc-binding domain family. Some LIM domains bind protein partners via tyrosine-containing motifs. LIM domains are found in many key regulators of developmental pathways.
Probab=35.76 E-value=14 Score=23.06 Aligned_cols=19 Identities=32% Similarity=1.032 Sum_probs=14.9
Q ss_pred CCcchhhHHHHHHhhhccCccccccccCCCCCCCcccc
Q 022965 244 SKAFHSVCLGDWLRSITTTRQSYDVLFGNCPYCSEPVA 281 (289)
Q Consensus 244 ~h~FH~~CL~eWL~~l~~~r~sF~~i~g~CP~Cr~~i~ 281 (289)
++.||..|+ .|..|+.+|.
T Consensus 20 ~~~~H~~Cf-------------------~C~~C~~~L~ 38 (39)
T smart00132 20 GKVWHPECF-------------------KCSKCGKPLG 38 (39)
T ss_pred CccccccCC-------------------CCcccCCcCc
Confidence 568999988 7888887764
No 137
>KOG2817 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=35.57 E-value=29 Score=34.73 Aligned_cols=30 Identities=27% Similarity=0.650 Sum_probs=21.8
Q ss_pred CCCCCcchhhHHHHHHhhhccCccccccccCCCCCCCc
Q 022965 241 SSCSKAFHSVCLGDWLRSITTTRQSYDVLFGNCPYCSE 278 (289)
Q Consensus 241 ~~C~h~FH~~CL~eWL~~l~~~r~sF~~i~g~CP~Cr~ 278 (289)
..|||..=..-|.+=.+. ++++| .||||=.
T Consensus 353 L~CGHVISkdAlnrLS~n---g~~sf-----KCPYCP~ 382 (394)
T KOG2817|consen 353 LICGHVISKDALNRLSKN---GSQSF-----KCPYCPV 382 (394)
T ss_pred eeccceecHHHHHHHhhC---CCeee-----eCCCCCc
Confidence 789999988877664443 45554 8999944
No 138
>PF14311 DUF4379: Domain of unknown function (DUF4379)
Probab=35.05 E-value=24 Score=24.94 Aligned_cols=7 Identities=57% Similarity=1.545 Sum_probs=6.1
Q ss_pred cCCCCCC
Q 022965 270 FGNCPYC 276 (289)
Q Consensus 270 ~g~CP~C 276 (289)
...||||
T Consensus 49 ~~~CP~C 55 (55)
T PF14311_consen 49 GKGCPYC 55 (55)
T ss_pred CCCCCCC
Confidence 6899998
No 139
>COG3975 Predicted protease with the C-terminal PDZ domain [General function prediction only]
Probab=34.19 E-value=52 Score=34.38 Aligned_cols=84 Identities=17% Similarity=0.243 Sum_probs=54.2
Q ss_pred EEEEEeCCCCEEEEEEEeCCCCCCCCCCccccCCCcccc-ccCccccHHHHHHHHHHHHHHHHHHHHhHHhhhccceeec
Q 022965 42 SFRVIDKKGRVHCMEIQLDKNYPRSPPSISADVPYIFNL-KWSRKSRLKDLLQQFREHLEKLQEIWNILDEIDKSLWVID 120 (289)
Q Consensus 42 ~l~~~D~~~R~H~l~i~l~~~yp~~~P~~~~dlP~~f~l-~w~~~s~L~~i~~qF~~~le~lq~fwd~ldeID~~~wVle 120 (289)
+.++- ...+.|.++|.+.-. . ..|.+..+.+ .|.|.|-+.-=+.++...+ .. .++.||++.|++-
T Consensus 2 ~y~i~-p~p~~h~~~v~lt~~---a----~~~~~~~l~~p~w~PGsy~Iref~r~~~~i---~a---~~~k~~k~~W~v~ 67 (558)
T COG3975 2 HYKIA-PSPLDHEFRVTLTFR---A----DDDGPLELRLPAWVPGSYLIREFARNVVDI---TA---PLEKIGKNRWQVA 67 (558)
T ss_pred ceEec-CCCCcceEEEEEEee---c----CCCCceEEecccccCchhhHHHHhhCceec---cc---hhhhccccceeee
Confidence 44555 677888888887531 1 1223333332 6888887654444443333 33 8999999999999
Q ss_pred CCCCCCCceeEEEEeCCce
Q 022965 121 LKNPSRANVCRQINLGYNC 139 (289)
Q Consensus 121 P~~P~~~~~~RrI~l~~~~ 139 (289)
+..-+-.-.||..|....+
T Consensus 68 ~~~~~~~VrY~vyA~~~sv 86 (558)
T COG3975 68 AKDGPLTVRYRVYAADLSV 86 (558)
T ss_pred cccCceEEEEEEEEecccc
Confidence 9886666678877776653
No 140
>PF15353 HECA: Headcase protein family homologue
Probab=34.07 E-value=29 Score=28.76 Aligned_cols=25 Identities=36% Similarity=0.878 Sum_probs=19.2
Q ss_pred cccccCCCC--CCcchhhHHHHHHhhh
Q 022965 235 DYTCDNSSC--SKAFHSVCLGDWLRSI 259 (289)
Q Consensus 235 d~~C~n~~C--~h~FH~~CL~eWL~~l 259 (289)
..+|.|..| |+..|..|..+|=.++
T Consensus 30 kv~Cnne~Cp~~~~MH~~CF~~wE~~i 56 (107)
T PF15353_consen 30 KVICNNESCPFGQYMHRECFEKWEDSI 56 (107)
T ss_pred EEEeCCCCCCCCCchHHHHHHHHHHHH
Confidence 346777666 7899999999996553
No 141
>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=33.74 E-value=41 Score=33.59 Aligned_cols=52 Identities=21% Similarity=0.593 Sum_probs=37.1
Q ss_pred cCCCCcccccccccccccchhhccccCCCCCcccccCCCCCCcchhhHHHHHHhhhccCccccccccCCCCCCCccc
Q 022965 204 ENNYQQVECGICYAQFLPIDEELGAKSGGGTDYTCDNSSCSKAFHSVCLGDWLRSITTTRQSYDVLFGNCPYCSEPV 280 (289)
Q Consensus 204 ~~~~~~~eC~ICy~~~l~~d~~~~~~~g~~Pd~~C~n~~C~h~FH~~CL~eWL~~l~~~r~sF~~i~g~CP~Cr~~i 280 (289)
+.+++.+-|-||-.-.. .+| ..+|+|..-..|-.. |++|-. .-.||+||...
T Consensus 56 dtDEen~~C~ICA~~~T---------------Ys~-~~PC~H~~CH~Ca~R-lRALY~--------~K~C~~CrTE~ 107 (493)
T COG5236 56 DTDEENMNCQICAGSTT---------------YSA-RYPCGHQICHACAVR-LRALYM--------QKGCPLCRTET 107 (493)
T ss_pred ccccccceeEEecCCce---------------EEE-eccCCchHHHHHHHH-HHHHHh--------ccCCCcccccc
Confidence 34556778999987542 445 368999988888765 566544 36999999865
No 142
>PF05290 Baculo_IE-1: Baculovirus immediate-early protein (IE-0); InterPro: IPR007954 This entry contains the Baculovirus immediate-early protein IE-0.
Probab=32.80 E-value=59 Score=28.14 Aligned_cols=54 Identities=22% Similarity=0.599 Sum_probs=33.2
Q ss_pred CcccccccccccccchhhccccCCC-CCcccccCCCCCCcchhhHHHH-HHhhhccCccccccccCCCCCCCcccccc
Q 022965 208 QQVECGICYAQFLPIDEELGAKSGG-GTDYTCDNSSCSKAFHSVCLGD-WLRSITTTRQSYDVLFGNCPYCSEPVAVK 283 (289)
Q Consensus 208 ~~~eC~ICy~~~l~~d~~~~~~~g~-~Pd~~C~n~~C~h~FH~~CL~e-WL~~l~~~r~sF~~i~g~CP~Cr~~i~~~ 283 (289)
..-||.||-+.-. | ..- -|+. | ||-..=..|-.. |=-. ..+..||.|+......
T Consensus 79 ~lYeCnIC~etS~--e------e~FLKPne-C----CgY~iCn~Cya~LWK~~---------~~ypvCPvCkTSFKss 134 (140)
T PF05290_consen 79 KLYECNICKETSA--E------ERFLKPNE-C----CGYSICNACYANLWKFC---------NLYPVCPVCKTSFKSS 134 (140)
T ss_pred CceeccCcccccc--h------hhcCCccc-c----cchHHHHHHHHHHHHHc---------ccCCCCCccccccccc
Confidence 4568999998743 1 111 2433 3 676666666544 4333 3489999999876443
No 143
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=32.75 E-value=43 Score=32.81 Aligned_cols=54 Identities=22% Similarity=0.409 Sum_probs=34.4
Q ss_pred CcccccccccccccchhhccccCCCCCcccccCCCCCCcchhhHHHHHHhhhccCccccccccCCCCCCCccccccc
Q 022965 208 QQVECGICYAQFLPIDEELGAKSGGGTDYTCDNSSCSKAFHSVCLGDWLRSITTTRQSYDVLFGNCPYCSEPVAVKI 284 (289)
Q Consensus 208 ~~~eC~ICy~~~l~~d~~~~~~~g~~Pd~~C~n~~C~h~FH~~CL~eWL~~l~~~r~sF~~i~g~CP~Cr~~i~~~~ 284 (289)
....|.||++....+ +.-.+| ..||+.-+..|+..=... .|.||.||++..-.+
T Consensus 248 v~~s~p~~~~~~~~~------d~~~lP------~~~~~~~~l~~~~t~~~~-----------~~~~~~~rk~~~~~t 301 (327)
T KOG2068|consen 248 VPPSCPICYEDLDLT------DSNFLP------CPCGFRLCLFCHKTISDG-----------DGRCPGCRKPYERNT 301 (327)
T ss_pred cCCCCCCCCCccccc------cccccc------ccccccchhhhhhccccc-----------CCCCCccCCccccCc
Confidence 447899999975311 122344 467777666666443333 799999998765443
No 144
>COG0721 GatC Asp-tRNAAsn/Glu-tRNAGln amidotransferase C subunit [Translation, ribosomal structure and biogenesis]
Probab=32.49 E-value=86 Score=25.15 Aligned_cols=26 Identities=27% Similarity=0.471 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHhHHhhhcc
Q 022965 90 DLLQQFREHLEKLQEIWNILDEIDKS 115 (289)
Q Consensus 90 ~i~~qF~~~le~lq~fwd~ldeID~~ 115 (289)
+-..+|...|+..-.|.++|+++|-.
T Consensus 22 ee~e~~~~~l~~Il~~veql~evD~~ 47 (96)
T COG0721 22 EELEKFATQLEDILGYVEQLNEVDTE 47 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 67788999999999999999999943
No 145
>KOG1571 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=32.37 E-value=21 Score=35.28 Aligned_cols=48 Identities=17% Similarity=0.328 Sum_probs=32.6
Q ss_pred CCcccccccccccccchhhccccCCCCCcccccCCCCCCcchhhHHHHHHhhhccCccccccccCCCCCCCccccccc
Q 022965 207 YQQVECGICYAQFLPIDEELGAKSGGGTDYTCDNSSCSKAFHSVCLGDWLRSITTTRQSYDVLFGNCPYCSEPVAVKI 284 (289)
Q Consensus 207 ~~~~eC~ICy~~~l~~d~~~~~~~g~~Pd~~C~n~~C~h~FH~~CL~eWL~~l~~~r~sF~~i~g~CP~Cr~~i~~~~ 284 (289)
.....|-||.+... .|.-..|||..= |...-.. -.+||.||+.|...+
T Consensus 303 ~~p~lcVVcl~e~~----------------~~~fvpcGh~cc--ct~cs~~------------l~~CPvCR~rI~~~~ 350 (355)
T KOG1571|consen 303 PQPDLCVVCLDEPK----------------SAVFVPCGHVCC--CTLCSKH------------LPQCPVCRQRIRLVR 350 (355)
T ss_pred CCCCceEEecCCcc----------------ceeeecCCcEEE--chHHHhh------------CCCCchhHHHHHHHH
Confidence 34568999998743 245578999844 5544222 356999999887654
No 146
>KOG0423 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=32.19 E-value=40 Score=30.44 Aligned_cols=63 Identities=19% Similarity=0.332 Sum_probs=47.3
Q ss_pred ccCCCChhHHHHHHHHHHHhccc-----eeeeecCCcceEEEEEEeCCCCE-----EEEEEEeCCCCCCCCCC
Q 022965 7 RESANSSSFSRSVYSEIEEVGWE-----HLVRLSEDLKFLSFRVIDKKGRV-----HCMEIQLDKNYPRSPPS 69 (289)
Q Consensus 7 ~~~~~~~~~y~~l~~Ei~~igw~-----~l~~id~~l~~i~l~~~D~~~R~-----H~l~i~l~~~yp~~~P~ 69 (289)
.|+--||.....|++|+.++.=+ +++-=+.||+.|+..|....|-- ..+.+.|..+||++||-
T Consensus 3 snenlpp~vik~~~kEl~~l~~~PPdGIKV~~NeeD~tdiqa~IeGP~GTPYa~GlFRmKL~L~kDFP~sPPK 75 (223)
T KOG0423|consen 3 SNENLPPNVIKQLAKELKSLDESPPDGIKVVVNEEDFTDIQADIEGPVGTPYANGLFRMKLALSKDFPHSPPK 75 (223)
T ss_pred cccCCChHHHHHHHHHHHhcccCCCCceEEecChHHhHHHHhhccCCCCCccccceeeehhhhcCCCCCCCCc
Confidence 35566899999999999999654 44555668999999888766632 34555667889999875
No 147
>COG4357 Zinc finger domain containing protein (CHY type) [Function unknown]
Probab=31.68 E-value=33 Score=28.15 Aligned_cols=12 Identities=50% Similarity=1.439 Sum_probs=9.7
Q ss_pred CCCCCCCccccc
Q 022965 271 GNCPYCSEPVAV 282 (289)
Q Consensus 271 g~CP~Cr~~i~~ 282 (289)
+.||||+.|+.-
T Consensus 81 ~~Cp~C~spFNp 92 (105)
T COG4357 81 GSCPYCQSPFNP 92 (105)
T ss_pred CCCCCcCCCCCc
Confidence 789999998753
No 148
>PF14461 Prok-E2_B: Prokaryotic E2 family B
Probab=31.48 E-value=1e+02 Score=25.56 Aligned_cols=52 Identities=23% Similarity=0.462 Sum_probs=36.2
Q ss_pred CCCEEEEEEEeCCCCCCCCCCccccCCCccc-----------------c---ccCccccHHHHHHHHHHHHH
Q 022965 49 KGRVHCMEIQLDKNYPRSPPSISADVPYIFN-----------------L---KWSRKSRLKDLLQQFREHLE 100 (289)
Q Consensus 49 ~~R~H~l~i~l~~~yp~~~P~~~~dlP~~f~-----------------l---~w~~~s~L~~i~~qF~~~le 100 (289)
.|+.-.|+|.+|..||..||.+...-|..+. + .|.|...+.++++|-...|+
T Consensus 34 ~~~~~~l~l~~p~~FP~~pp~v~l~d~~~~~~~pHv~~~G~LCl~~~~~~~D~~~P~~~~~~~l~~a~~lL~ 105 (133)
T PF14461_consen 34 GGGPFPLRLVFPDDFPYLPPRVYLEDPKQFPLLPHVESDGKLCLLDEELVLDPWDPEGIIADCLERAIRLLE 105 (133)
T ss_pred CCeEEEEEEEECCcccCcCCEEEecCccccCccCeEcCCCeEEEecCCcccCccCHHHHHHHHHHHHHHHHH
Confidence 7899999999999999999988765444321 1 24444456677777666654
No 149
>KOG1609 consensus Protein involved in mRNA turnover and stability [RNA processing and modification]
Probab=31.03 E-value=38 Score=31.30 Aligned_cols=58 Identities=17% Similarity=0.284 Sum_probs=33.7
Q ss_pred CcccccccccccccchhhccccCCCCCcccccCCCCCCcchhhHHHHHHhhhccCccccccccCCCCCCCcccc
Q 022965 208 QQVECGICYAQFLPIDEELGAKSGGGTDYTCDNSSCSKAFHSVCLGDWLRSITTTRQSYDVLFGNCPYCSEPVA 281 (289)
Q Consensus 208 ~~~eC~ICy~~~l~~d~~~~~~~g~~Pd~~C~n~~C~h~FH~~CL~eWL~~l~~~r~sF~~i~g~CP~Cr~~i~ 281 (289)
.+..|-||.....+.... .-..| -.|.+ =-+..|+.|+..|+..- + ...|..|.....
T Consensus 77 ~~~~cRIc~~~~~~~~~~----~l~~p-C~C~g--~l~~vH~~cl~~W~~~~---~------~~~CeiC~~~~~ 134 (323)
T KOG1609|consen 77 SGPICRICHEEDEESNGL----LLISP-CSCKG--SLAYVHRSCLEKWFSIK---G------NITCEICKSFFI 134 (323)
T ss_pred CCCcEEEEeccccccccc----ccccC-ccccC--cHHHHHHHHHHhhhccc---c------Ceeeecccccce
Confidence 357899999975421100 00112 12322 13467999999999941 1 458888887543
No 150
>PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines. Several members are annotated as putative helicases.
Probab=30.44 E-value=31 Score=21.39 Aligned_cols=23 Identities=26% Similarity=0.592 Sum_probs=14.7
Q ss_pred cccccccccccchhhccccCCCCCcccccCCCCCCcc
Q 022965 211 ECGICYAQFLPIDEELGAKSGGGTDYTCDNSSCSKAF 247 (289)
Q Consensus 211 eC~ICy~~~l~~d~~~~~~~g~~Pd~~C~n~~C~h~F 247 (289)
.|.-|...+. .-.+.| +.|||.|
T Consensus 2 ~CP~C~~~V~------------~~~~~C--p~CG~~F 24 (26)
T PF10571_consen 2 TCPECGAEVP------------ESAKFC--PHCGYDF 24 (26)
T ss_pred cCCCCcCCch------------hhcCcC--CCCCCCC
Confidence 4677777653 123567 7788887
No 151
>KOG4323 consensus Polycomb-like PHD Zn-finger protein [General function prediction only]
Probab=29.90 E-value=29 Score=35.54 Aligned_cols=36 Identities=22% Similarity=0.675 Sum_probs=24.2
Q ss_pred CcccccccccccccchhhccccCCCCCcccccCCCCCCcchhhHHHH
Q 022965 208 QQVECGICYAQFLPIDEELGAKSGGGTDYTCDNSSCSKAFHSVCLGD 254 (289)
Q Consensus 208 ~~~eC~ICy~~~l~~d~~~~~~~g~~Pd~~C~n~~C~h~FH~~CL~e 254 (289)
...+|..||.-... .+. --.-| -+|+..||+.|-.-
T Consensus 167 ~n~qc~vC~~g~~~--------~~N-rmlqC--~~C~~~fHq~Chqp 202 (464)
T KOG4323|consen 167 VNLQCSVCYCGGPG--------AGN-RMLQC--DKCRQWYHQACHQP 202 (464)
T ss_pred ccceeeeeecCCcC--------ccc-eeeee--cccccHHHHHhccC
Confidence 45679999976431 111 22358 78999999999643
No 152
>KOG0803 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=29.59 E-value=11 Score=42.94 Aligned_cols=61 Identities=23% Similarity=0.409 Sum_probs=42.3
Q ss_pred CCCCcccccccccccccchhhccccCCCCCcccccCCCCCCcchhhHHHHHHhhhccCccccccccCCCCCCCcccccc
Q 022965 205 NNYQQVECGICYAQFLPIDEELGAKSGGGTDYTCDNSSCSKAFHSVCLGDWLRSITTTRQSYDVLFGNCPYCSEPVAVK 283 (289)
Q Consensus 205 ~~~~~~eC~ICy~~~l~~d~~~~~~~g~~Pd~~C~n~~C~h~FH~~CL~eWL~~l~~~r~sF~~i~g~CP~Cr~~i~~~ 283 (289)
..+...+|+||+.... + ..|-..|...-|-..||..|+..|.-. .- . ...||.||+....-
T Consensus 1057 ~~~~~~~~si~~~~~~---------~-~~~~~~~~r~~c~~~f~~~~l~~w~s~---ed----~-s~~~~~~r~~~~~v 1117 (1312)
T KOG0803|consen 1057 VISRLREFSISHGSND---------D-DLPFLSCLRAFCPNKFHTECLVKWKSG---ED----I-SENCPLCRELSTIV 1117 (1312)
T ss_pred HHhHHHHhhhhccccc---------h-hhhHHHHHHHhhhhhhhchhhHHhhcc---cc----c-cccccchhhhhHHH
Confidence 3445678999988743 1 234445534459999999999999987 11 1 36999999976543
No 153
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=28.58 E-value=26 Score=37.81 Aligned_cols=30 Identities=33% Similarity=0.774 Sum_probs=19.7
Q ss_pred cccCCCCCCcchhhHHHHHHhhhccCccccccccCCCCCCCcc
Q 022965 237 TCDNSSCSKAFHSVCLGDWLRSITTTRQSYDVLFGNCPYCSEP 279 (289)
Q Consensus 237 ~C~n~~C~h~FH~~CL~eWL~~l~~~r~sF~~i~g~CP~Cr~~ 279 (289)
.| +.|.+.||..=..--.-. +|.||+||..
T Consensus 1046 ~C--p~C~~~F~~eDFEl~vLq-----------KGHCPFCrTS 1075 (1081)
T KOG1538|consen 1046 MC--PSCFQMFHSEDFELLVLQ-----------KGHCPFCRTS 1075 (1081)
T ss_pred hC--chHHhhhccchhhHHHHh-----------cCCCCccccc
Confidence 46 778888887543322122 5999999975
No 154
>PF14169 YdjO: Cold-inducible protein YdjO
Probab=28.29 E-value=30 Score=25.75 Aligned_cols=34 Identities=24% Similarity=0.764 Sum_probs=21.3
Q ss_pred CcccccCCCCCCcchhhHHHHHHhhhccCccccccccCCCCCCCcccc
Q 022965 234 TDYTCDNSSCSKAFHSVCLGDWLRSITTTRQSYDVLFGNCPYCSEPVA 281 (289)
Q Consensus 234 Pd~~C~n~~C~h~FH~~CL~eWL~~l~~~r~sF~~i~g~CP~Cr~~i~ 281 (289)
+--.|-+..|+ -|.|..-+... ...||+|..+|.
T Consensus 17 ~VW~Ct~e~C~---------gWmR~nFs~~~-----~p~CPlC~s~M~ 50 (59)
T PF14169_consen 17 KVWECTSEDCN---------GWMRDNFSFEE-----EPVCPLCKSPMV 50 (59)
T ss_pred eeEEeCCCCCC---------cccccccccCC-----CccCCCcCCccc
Confidence 34457666664 37776332222 479999999874
No 155
>PF13467 RHH_4: Ribbon-helix-helix domain; PDB: 3KK4_C.
Probab=27.80 E-value=37 Score=25.75 Aligned_cols=12 Identities=33% Similarity=0.833 Sum_probs=9.8
Q ss_pred HHHHHhHHhhhc
Q 022965 103 QEIWNILDEIDK 114 (289)
Q Consensus 103 q~fwd~ldeID~ 114 (289)
..||+.|++|=+
T Consensus 20 ~~FW~~L~eiA~ 31 (67)
T PF13467_consen 20 PAFWDALEEIAA 31 (67)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 689999999843
No 156
>PF15225 IL32: Interleukin 32
Probab=27.60 E-value=92 Score=25.26 Aligned_cols=29 Identities=24% Similarity=0.563 Sum_probs=24.3
Q ss_pred ccCcc-ccHHHHHHHHHHHHHHHHHHHHhH
Q 022965 81 KWSRK-SRLKDLLQQFREHLEKLQEIWNIL 109 (289)
Q Consensus 81 ~w~~~-s~L~~i~~qF~~~le~lq~fwd~l 109 (289)
-|.|. |.-..++.+|+.+|..||..|.-+
T Consensus 32 ~~eP~Esf~dkvmR~FqamlqrLQ~ww~~v 61 (104)
T PF15225_consen 32 VWEPGESFCDKVMRWFQAMLQRLQTWWQAV 61 (104)
T ss_pred cCCcchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47774 668899999999999999999754
No 157
>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=27.25 E-value=37 Score=33.72 Aligned_cols=51 Identities=22% Similarity=0.459 Sum_probs=32.4
Q ss_pred CcccccccccccccchhhccccCCCCCcccccCCCCCCcchhhHHHHHHhhhccCccccccccCCCCC
Q 022965 208 QQVECGICYAQFLPIDEELGAKSGGGTDYTCDNSSCSKAFHSVCLGDWLRSITTTRQSYDVLFGNCPY 275 (289)
Q Consensus 208 ~~~eC~ICy~~~l~~d~~~~~~~g~~Pd~~C~n~~C~h~FH~~CL~eWL~~l~~~r~sF~~i~g~CP~ 275 (289)
...+|+||+......+ +.-+ ..+|+|.|=..|+..-+..- -++..-..||.
T Consensus 145 ~~~~C~iC~~e~~~~~-----------~~f~-~~~C~H~fC~~C~k~~iev~-----~~~~~~~~C~~ 195 (384)
T KOG1812|consen 145 PKEECGICFVEDPEAE-----------DMFS-VLKCGHRFCKDCVKQHIEVK-----LLSGTVIRCPH 195 (384)
T ss_pred ccccCccCccccccHh-----------hhHH-HhcccchhhhHHhHHHhhhh-----hccCCCccCCC
Confidence 3568999994432111 1122 47899999999999888762 23344556654
No 158
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=27.02 E-value=25 Score=37.49 Aligned_cols=47 Identities=23% Similarity=0.518 Sum_probs=32.3
Q ss_pred ccccccccccccchhhccccCCCCCcccccCCCCCCcchhhHHHHHHhhhccCccccccccCCCCCCCccccc
Q 022965 210 VECGICYAQFLPIDEELGAKSGGGTDYTCDNSSCSKAFHSVCLGDWLRSITTTRQSYDVLFGNCPYCSEPVAV 282 (289)
Q Consensus 210 ~eC~ICy~~~l~~d~~~~~~~g~~Pd~~C~n~~C~h~FH~~CL~eWL~~l~~~r~sF~~i~g~CP~Cr~~i~~ 282 (289)
..|.||.. . ..|.-+.|||.|=..|+.+=++. +. ...||.||..+.-
T Consensus 455 ~~c~ic~~--~---------------~~~~it~c~h~~c~~c~~~~i~~---~~------~~~~~~cr~~l~~ 501 (674)
T KOG1001|consen 455 HWCHICCD--L---------------DSFFITRCGHDFCVECLKKSIQQ---SE------NAPCPLCRNVLKE 501 (674)
T ss_pred cccccccc--c---------------ccceeecccchHHHHHHHhcccc---cc------CCCCcHHHHHHHH
Confidence 68999998 2 12445889888877777665554 21 2389999986643
No 159
>KOG0826 consensus Predicted E3 ubiquitin ligase involved in peroxisome organization [Posttranslational modification, protein turnover, chaperones]
Probab=26.77 E-value=51 Score=32.52 Aligned_cols=68 Identities=21% Similarity=0.500 Sum_probs=46.4
Q ss_pred HHHHhcccCCCCCCC----c---CCCCcccccccccccccchhhccccCCCCCcccccCCCCCCcchhhHHHHHHhhhcc
Q 022965 189 VANLLETQLPRPPEH----E---NNYQQVECGICYAQFLPIDEELGAKSGGGTDYTCDNSSCSKAFHSVCLGDWLRSITT 261 (289)
Q Consensus 189 L~~il~~~~P~~~~~----~---~~~~~~eC~ICy~~~l~~d~~~~~~~g~~Pd~~C~n~~C~h~FH~~CL~eWL~~l~~ 261 (289)
+...+.-+.|+|+.. | .+-....|++|.--+- + +-+| .-=|-.|=..|+...+.+
T Consensus 273 ~k~~l~~p~PpPPh~~~~se~e~l~~~~~~CpvClk~r~---------N----ptvl--~vSGyVfCY~Ci~~Yv~~--- 334 (357)
T KOG0826|consen 273 IKSTLDPPIPPPPHKQYNSESELLPPDREVCPVCLKKRQ---------N----PTVL--EVSGYVFCYPCIFSYVVN--- 334 (357)
T ss_pred hccCCCCCCCcCChhhcccccccCCCccccChhHHhccC---------C----CceE--EecceEEeHHHHHHHHHh---
Confidence 334444457777621 1 2235679999998764 1 2233 344889999999999998
Q ss_pred CccccccccCCCCCCCccccc
Q 022965 262 TRQSYDVLFGNCPYCSEPVAV 282 (289)
Q Consensus 262 ~r~sF~~i~g~CP~Cr~~i~~ 282 (289)
+|.||.=-.|+++
T Consensus 335 --------~~~CPVT~~p~~v 347 (357)
T KOG0826|consen 335 --------YGHCPVTGYPASV 347 (357)
T ss_pred --------cCCCCccCCcchH
Confidence 9999987777665
No 160
>COG1545 Predicted nucleic-acid-binding protein containing a Zn-ribbon [General function prediction only]
Probab=25.39 E-value=30 Score=29.49 Aligned_cols=30 Identities=20% Similarity=0.587 Sum_probs=24.2
Q ss_pred CCCCCcccccCCCCCCcchhhHHHHHHhhhccCccccccccCCCCCCCccc
Q 022965 230 SGGGTDYTCDNSSCSKAFHSVCLGDWLRSITTTRQSYDVLFGNCPYCSEPV 280 (289)
Q Consensus 230 ~g~~Pd~~C~n~~C~h~FH~~CL~eWL~~l~~~r~sF~~i~g~CP~Cr~~i 280 (289)
.|.+....| .+||+.||-. ..-||.|..+.
T Consensus 24 ~~kl~g~kC--~~CG~v~~PP-------------------r~~Cp~C~~~~ 53 (140)
T COG1545 24 EGKLLGTKC--KKCGRVYFPP-------------------RAYCPKCGSET 53 (140)
T ss_pred hCcEEEEEc--CCCCeEEcCC-------------------cccCCCCCCCC
Confidence 467778889 8899999853 46999999884
No 161
>PF09538 FYDLN_acid: Protein of unknown function (FYDLN_acid); InterPro: IPR012644 Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown.
Probab=25.32 E-value=53 Score=27.05 Aligned_cols=31 Identities=29% Similarity=0.535 Sum_probs=19.6
Q ss_pred cccccCCCCCCcchhhHHHHHHhhhccCccccccccCCCCCCCcccccc
Q 022965 235 DYTCDNSSCSKAFHSVCLGDWLRSITTTRQSYDVLFGNCPYCSEPVAVK 283 (289)
Q Consensus 235 d~~C~n~~C~h~FH~~CL~eWL~~l~~~r~sF~~i~g~CP~Cr~~i~~~ 283 (289)
.++| +.||..|-- |.+ ---.||||.+.+...
T Consensus 9 KR~C--p~CG~kFYD------Lnk----------~PivCP~CG~~~~~~ 39 (108)
T PF09538_consen 9 KRTC--PSCGAKFYD------LNK----------DPIVCPKCGTEFPPE 39 (108)
T ss_pred cccC--CCCcchhcc------CCC----------CCccCCCCCCccCcc
Confidence 4678 778888754 122 134688888866555
No 162
>KOG3842 consensus Adaptor protein Pellino [Signal transduction mechanisms]
Probab=24.10 E-value=91 Score=30.84 Aligned_cols=70 Identities=19% Similarity=0.502 Sum_probs=43.0
Q ss_pred Cccccccccccc--ccc--hhhcc-ccCCCCCcccccCCCCCCcchhhHHHHHHhh-hccCccccccccCCCCCCCcccc
Q 022965 208 QQVECGICYAQF--LPI--DEELG-AKSGGGTDYTCDNSSCSKAFHSVCLGDWLRS-ITTTRQSYDVLFGNCPYCSEPVA 281 (289)
Q Consensus 208 ~~~eC~ICy~~~--l~~--d~~~~-~~~g~~Pd~~C~n~~C~h~FH~~CL~eWL~~-l~~~r~sF~~i~g~CP~Cr~~i~ 281 (289)
.+.+|.||...= .+. .-|.+ --+...|+..- ..|||..-..=..-|-+. ||-+...| +..||+|-+.+.
T Consensus 340 ~~r~CPmC~~~gp~V~L~lG~E~~f~vD~G~pthaF--~PCGHv~sekt~~YWs~iplPhGT~~f---~a~CPFC~~~L~ 414 (429)
T KOG3842|consen 340 RERECPMCRVVGPYVPLWLGCEAGFYVDAGPPTHAF--NPCGHVCSEKTVKYWSQIPLPHGTHAF---HAACPFCATQLA 414 (429)
T ss_pred ccCcCCeeeeecceeeeeccccceeEecCCCccccc--CCcccccchhhhhHhhcCcCCCccccc---cccCcchhhhhc
Confidence 367999998741 110 00000 00112355443 689999999999999875 44443344 789999998875
Q ss_pred c
Q 022965 282 V 282 (289)
Q Consensus 282 ~ 282 (289)
-
T Consensus 415 g 415 (429)
T KOG3842|consen 415 G 415 (429)
T ss_pred c
Confidence 3
No 163
>PHA03050 glutaredoxin; Provisional
Probab=24.09 E-value=29 Score=28.12 Aligned_cols=25 Identities=12% Similarity=0.436 Sum_probs=14.0
Q ss_pred HHHhhhccCccccccccCCCCCCCc
Q 022965 254 DWLRSITTTRQSYDVLFGNCPYCSE 278 (289)
Q Consensus 254 eWL~~l~~~r~sF~~i~g~CP~Cr~ 278 (289)
+|++.+-+..+.-=.....||||+.
T Consensus 4 ~~v~~~i~~~~V~vys~~~CPyC~~ 28 (108)
T PHA03050 4 EFVQQRLANNKVTIFVKFTCPFCRN 28 (108)
T ss_pred HHHHHHhccCCEEEEECCCChHHHH
Confidence 4555544332222233678999986
No 164
>KOG0426 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=24.05 E-value=1.1e+02 Score=26.60 Aligned_cols=22 Identities=32% Similarity=0.650 Sum_probs=17.8
Q ss_pred CCEEEEEEEeCCCCCCCCCCcc
Q 022965 50 GRVHCMEIQLDKNYPRSPPSIS 71 (289)
Q Consensus 50 ~R~H~l~i~l~~~yp~~~P~~~ 71 (289)
|-..--++++|.+||.+||.+.
T Consensus 51 ~GvfpA~l~FP~DYPLsPPkm~ 72 (165)
T KOG0426|consen 51 GGVFPARLSFPLDYPLSPPKMR 72 (165)
T ss_pred CCccceeeecCCCCCCCCCcee
Confidence 4556678999999999998765
No 165
>KOG0895 consensus Ubiquitin-conjugating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=23.78 E-value=64 Score=36.29 Aligned_cols=70 Identities=20% Similarity=0.411 Sum_probs=43.1
Q ss_pred cceEEEEEEeCCC-----CEEEEEEEeCCCCCCCCCCccccC---CCcccc--------------------ccCccccHH
Q 022965 38 LKFLSFRVIDKKG-----RVHCMEIQLDKNYPRSPPSISADV---PYIFNL--------------------KWSRKSRLK 89 (289)
Q Consensus 38 l~~i~l~~~D~~~-----R~H~l~i~l~~~yp~~~P~~~~dl---P~~f~l--------------------~w~~~s~L~ 89 (289)
+..++..++.+.| --.+..|.+|..||.+||.|..-- =+..+| .|.++|++.
T Consensus 880 ~d~~~~~~~g~~~tpy~~~~f~fd~~~~~~yp~~pp~~~~~s~~~r~npnly~~g~vc~s~l~tw~g~~~e~w~~~s~~l 959 (1101)
T KOG0895|consen 880 MDLLRAVIVGAAGTPYQDGLFFFDFQFPQDYPSSPPLVHYHSGGVRLNPNLYEDGKVCLSLLNTWHGRGNEVWNPSSSIL 959 (1101)
T ss_pred HHHHHHHhhCCCCCccccceEEEEeecCCCCCCCCCceEeecCceeeCcccccccceehhhhccccCCCccccCcchhHH
Confidence 3344444554444 235678999999999999986321 111111 488877877
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 022965 90 DLLQQFREHLEKLQEIWN 107 (289)
Q Consensus 90 ~i~~qF~~~le~lq~fwd 107 (289)
.++--||..+--=++||+
T Consensus 960 q~l~s~q~l~l~~~py~n 977 (1101)
T KOG0895|consen 960 QVLVSIQGLVLNEEPYFN 977 (1101)
T ss_pred HHHHHhhhhhcccccccC
Confidence 777777776655455554
No 166
>KOG0897 consensus Predicted ubiquitin-conjugating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=23.72 E-value=1.7e+02 Score=24.78 Aligned_cols=72 Identities=24% Similarity=0.360 Sum_probs=47.4
Q ss_pred CCEEEEEE-EeCCCCCCCCCCccccCCCcc---cc-------------ccCccccHHHHHHHHHHHH-------------
Q 022965 50 GRVHCMEI-QLDKNYPRSPPSISADVPYIF---NL-------------KWSRKSRLKDLLQQFREHL------------- 99 (289)
Q Consensus 50 ~R~H~l~i-~l~~~yp~~~P~~~~dlP~~f---~l-------------~w~~~s~L~~i~~qF~~~l------------- 99 (289)
|-+|+|.. ..+.+||..||...+.-|+.- .+ .|+..++...++-||-..+
T Consensus 9 ~te~ill~~~f~~~fp~~ppf~rvv~p~~~~Gyvl~ggAIcmellt~qgwssay~Ve~vi~qiaatlVkG~~ri~~~a~k 88 (122)
T KOG0897|consen 9 GTENILLLDIFDDNFPFMPPFPRVVKPLEDEGYVLEGGAICMELLTKQGWSSAYEVERVIMQIAATLVKGGARIEFPAEK 88 (122)
T ss_pred CCceeEeeeecccCCCCCCCcceeeeecccCCEEecchhhHHHHHccccccchhhHHHHHHHHHHHhhccceeEecCcch
Confidence 34455444 458999999999999888732 11 5887778888888887654
Q ss_pred --------HHHHHHHHhHHhhhccceeecC
Q 022965 100 --------EKLQEIWNILDEIDKSLWVIDL 121 (289)
Q Consensus 100 --------e~lq~fwd~ldeID~~~wVleP 121 (289)
..+|.|=+-+.+.-++-||.-|
T Consensus 89 ~sk~~s~~qa~~sfksLv~~heksg~~t~p 118 (122)
T KOG0897|consen 89 SSKLYSHSQAQQSFKSLVQIHEKSGWVTPP 118 (122)
T ss_pred hhhHhhHHHHHHHHHHHHHHHHhcCCcCCC
Confidence 1244555555555666666544
No 167
>TIGR00293 prefoldin, archaeal alpha subunit/eukaryotic subunit 5. This model finds a set of small proteins from the Archaea and from Aquifex aeolicus that may represent two orthologous groups. The proteins are predicted to be mostly coiled coil, and may hit large numbers of proteins that contain coiled coil regions.
Probab=23.08 E-value=3.1e+02 Score=22.18 Aligned_cols=22 Identities=5% Similarity=0.067 Sum_probs=18.4
Q ss_pred CceeEEEEeCCceEEEEEEeCC
Q 022965 127 ANVCRQINLGYNCIIMLSIHID 148 (289)
Q Consensus 127 ~~~~RrI~l~~~~sl~i~vdp~ 148 (289)
......+.||..+++.-+|.+.
T Consensus 46 ~~~~~lv~lg~~~~v~~~v~~~ 67 (126)
T TIGR00293 46 EGKETLVPVGAGSFVKAKVKDT 67 (126)
T ss_pred CCCeEEEEcCCCeEEEEEeCCC
Confidence 3577889999999999998654
No 168
>KOG4443 consensus Putative transcription factor HALR/MLL3, involved in embryonic development [General function prediction only]
Probab=23.07 E-value=39 Score=36.00 Aligned_cols=39 Identities=26% Similarity=0.653 Sum_probs=27.7
Q ss_pred cccCCCCCCcchhhHHHHHHhhhccCccccccccCCCCCCCcccccc
Q 022965 237 TCDNSSCSKAFHSVCLGDWLRSITTTRQSYDVLFGNCPYCSEPVAVK 283 (289)
Q Consensus 237 ~C~n~~C~h~FH~~CL~eWL~~l~~~r~sF~~i~g~CP~Cr~~i~~~ 283 (289)
.| ..|+..||..|+.-|+...- -|+- -.||-||.=..+.
T Consensus 37 ac--~~c~~~yH~~cvt~~~~~~~----l~~g--WrC~~crvCe~c~ 75 (694)
T KOG4443|consen 37 AC--SDCGQKYHPYCVTSWAQHAV----LSGG--WRCPSCRVCEACG 75 (694)
T ss_pred hh--hhhcccCCcchhhHHHhHHH----hcCC--cccCCceeeeecc
Confidence 46 67999999999999998732 1111 2599998755444
No 169
>PF07559 FlaE: Flagellar basal body protein FlaE; InterPro: IPR011491 This domain is found in several bacterial FlaE flagellar proteins. These proteins are part of the flagellar basal body rod complex.; GO: 0030694 bacterial-type flagellum basal body, rod; PDB: 2BGY_A 1WLG_B 2BGZ_A 3A69_A.
Probab=22.96 E-value=98 Score=24.91 Aligned_cols=22 Identities=27% Similarity=0.397 Sum_probs=16.5
Q ss_pred eEEEEEEeCCCCEEEEEEEeCC
Q 022965 40 FLSFRVIDKKGRVHCMEIQLDK 61 (289)
Q Consensus 40 ~i~l~~~D~~~R~H~l~i~l~~ 61 (289)
.-.+++.|+.|.+|.|++.+-.
T Consensus 12 ~ts~~vYDSlG~~h~lt~~f~k 33 (130)
T PF07559_consen 12 STSITVYDSLGNAHTLTVYFTK 33 (130)
T ss_dssp EEEEEEE-TT--EEEEEEEEEE
T ss_pred eeeEEEECCCCCEEEEEEEEEE
Confidence 5679999999999999999854
No 170
>COG5242 TFB4 RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB4 [Transcription / DNA replication, recombination, and repair]
Probab=22.50 E-value=1.6e+02 Score=27.91 Aligned_cols=29 Identities=28% Similarity=0.564 Sum_probs=20.4
Q ss_pred ccHHHHHHHHHHHHH-HHHHHHHhHHhhhc
Q 022965 86 SRLKDLLQQFREHLE-KLQEIWNILDEIDK 114 (289)
Q Consensus 86 s~L~~i~~qF~~~le-~lq~fwd~ldeID~ 114 (289)
.+-.+.|..|+++=| .+.+.+..|+-=|+
T Consensus 95 tr~sd~yrrfr~vde~~i~eiyrl~e~~~k 124 (296)
T COG5242 95 TRNSDMYRRFRNVDETDITEIYRLIEHPHK 124 (296)
T ss_pred ccchhhhhhhcccchHHHHHHHHHHhCccc
Confidence 456789999998776 56666766665444
No 171
>PF14801 GCD14_N: tRNA methyltransferase complex GCD14 subunit N-term; PDB: 1I9G_A.
Probab=21.97 E-value=1.1e+02 Score=22.56 Aligned_cols=18 Identities=28% Similarity=0.549 Sum_probs=11.1
Q ss_pred EEEEEeCCCCEEEEEEEe
Q 022965 42 SFRVIDKKGRVHCMEIQL 59 (289)
Q Consensus 42 ~l~~~D~~~R~H~l~i~l 59 (289)
+++..|.+||.|.+.++-
T Consensus 11 rVQlTD~Kgr~~Ti~L~~ 28 (54)
T PF14801_consen 11 RVQLTDPKGRKHTITLEP 28 (54)
T ss_dssp EEEEEETT--EEEEE--T
T ss_pred EEEEccCCCCeeeEEECC
Confidence 356789999999988764
No 172
>PF02996 Prefoldin: Prefoldin subunit; InterPro: IPR004127 This entry comprises of several prefoldin subunits. Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal alpha subunit, eukaryotic prefoldin subunits 3 and 5 and the UXT (ubiquitously expressed transcript) family. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 1FXK_C 2ZDI_C.
Probab=21.66 E-value=4.1e+02 Score=20.98 Aligned_cols=50 Identities=22% Similarity=0.343 Sum_probs=38.9
Q ss_pred cHHHHHHHHHHHHHHHHHHHHhHHhhhccceeecCCCCCCCceeEEEEeCCceEEEEEEe
Q 022965 87 RLKDLLQQFREHLEKLQEIWNILDEIDKSLWVIDLKNPSRANVCRQINLGYNCIIMLSIH 146 (289)
Q Consensus 87 ~L~~i~~qF~~~le~lq~fwd~ldeID~~~wVleP~~P~~~~~~RrI~l~~~~sl~i~vd 146 (289)
.|..-+.++...+++|+..=+.++.+.+ .....--.|.||.++++..+|.
T Consensus 7 ~l~~~~~~l~~~~~e~~~~~~~l~~l~~----------~~~~~~~lvplg~~~~v~g~i~ 56 (120)
T PF02996_consen 7 NLQQQIEQLEEQIEEYEEAKETLEELKK----------EKKEHEILVPLGSGVFVPGKIP 56 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTT------------TT-EEEEEECTTEEEEEE-S
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhc----------cCCCceeeecCCCCeEEEEEeC
Confidence 4677788888889999999999999887 3345666799999999999983
No 173
>PF04606 Ogr_Delta: Ogr/Delta-like zinc finger; InterPro: IPR007684 This entry is represented by Bacteriophage P2, Ogr. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This is a viral family of phage zinc-binding transcriptional activators, which also contains cryptic members in some bacterial genomes []. The P4 phage delta protein contains two such domains attached covalently, while the P2 phage Ogr proteins possess one domain but function as dimers. All the members of this family have the following consensus sequence: C-X(2)-C-X(3)-A-(X)2-R-X(15)-C-X(4)-C-X(3)-F [].; GO: 0006355 regulation of transcription, DNA-dependent
Probab=21.36 E-value=44 Score=23.12 Aligned_cols=11 Identities=36% Similarity=1.090 Sum_probs=9.9
Q ss_pred cccCCCCCCcc
Q 022965 237 TCDNSSCSKAF 247 (289)
Q Consensus 237 ~C~n~~C~h~F 247 (289)
.|.|..|||.|
T Consensus 27 qC~N~~Cg~tf 37 (47)
T PF04606_consen 27 QCTNPECGHTF 37 (47)
T ss_pred EECCCcCCCEE
Confidence 68999999988
No 174
>PRK00398 rpoP DNA-directed RNA polymerase subunit P; Provisional
Probab=20.76 E-value=39 Score=23.05 Aligned_cols=16 Identities=31% Similarity=0.611 Sum_probs=12.1
Q ss_pred cCCCCCCCcccccccc
Q 022965 270 FGNCPYCSEPVAVKIS 285 (289)
Q Consensus 270 ~g~CP~Cr~~i~~~~~ 285 (289)
...||+|..++..+..
T Consensus 21 ~~~Cp~CG~~~~~~~~ 36 (46)
T PRK00398 21 GVRCPYCGYRILFKER 36 (46)
T ss_pred ceECCCCCCeEEEccC
Confidence 3599999998876543
No 175
>PF05810 NinF: NinF protein; InterPro: IPR008712 This family consists of several bacteriophage NinF proteins as well as related sequences from Escherichia coli.
Probab=20.41 E-value=72 Score=23.66 Aligned_cols=14 Identities=21% Similarity=0.615 Sum_probs=10.6
Q ss_pred hhHHHHHHh-hhccC
Q 022965 249 SVCLGDWLR-SITTT 262 (289)
Q Consensus 249 ~~CL~eWL~-~l~~~ 262 (289)
..|+.|||. +-|++
T Consensus 36 e~C~~E~l~y~DpN~ 50 (58)
T PF05810_consen 36 EECCAEWLVYRDPNS 50 (58)
T ss_pred HHHHHHHHhhcCCcc
Confidence 579999998 65543
Done!