Query 022965
Match_columns 289
No_of_seqs 179 out of 514
Neff 5.2
Searched_HMMs 29240
Date Mon Mar 25 14:05:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022965.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/022965hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3k1l_B Fancl; UBC, ring, RWD, 100.0 2.8E-77 9.5E-82 567.6 19.7 256 17-286 109-377 (381)
2 3zqs_A E3 ubiquitin-protein li 100.0 3.4E-73 1.2E-77 500.6 19.1 186 14-199 1-186 (186)
3 2ct0_A Non-SMC element 1 homol 99.3 2.1E-12 7.3E-17 98.0 4.0 56 206-285 12-67 (74)
4 2kiz_A E3 ubiquitin-protein li 99.2 6.6E-12 2.3E-16 91.4 5.5 58 205-286 10-67 (69)
5 1iym_A EL5; ring-H2 finger, ub 99.2 3.6E-12 1.2E-16 88.8 3.3 52 208-282 4-55 (55)
6 2ea6_A Ring finger protein 4; 99.2 1.5E-11 5E-16 88.8 4.0 57 206-282 12-68 (69)
7 2ecl_A Ring-box protein 2; RNF 99.2 1.2E-11 4E-16 94.0 3.7 61 208-284 14-78 (81)
8 2ecm_A Ring finger and CHY zin 99.1 2.3E-11 8E-16 84.4 4.1 51 208-281 4-54 (55)
9 2ep4_A Ring finger protein 24; 99.1 2.4E-11 8.3E-16 89.5 4.3 53 206-282 12-64 (74)
10 2l0b_A E3 ubiquitin-protein li 99.1 1.8E-11 6.2E-16 94.6 3.6 54 206-283 37-90 (91)
11 3dpl_R Ring-box protein 1; ubi 99.1 1.7E-11 5.7E-16 98.6 3.4 65 209-284 37-103 (106)
12 1x4j_A Ring finger protein 38; 99.1 1.6E-11 5.3E-16 91.1 2.9 53 206-282 20-72 (75)
13 2ect_A Ring finger protein 126 99.1 3.6E-11 1.2E-15 89.5 4.1 56 205-284 11-66 (78)
14 1v87_A Deltex protein 2; ring- 99.1 1E-10 3.4E-15 93.0 4.5 70 209-284 25-96 (114)
15 3ng2_A RNF4, snurf, ring finge 99.0 5.6E-11 1.9E-15 86.4 2.6 58 206-283 7-64 (71)
16 4a0k_B E3 ubiquitin-protein li 99.0 4E-11 1.4E-15 98.3 0.4 64 209-283 48-113 (117)
17 2xeu_A Ring finger protein 4; 99.0 6E-11 2.1E-15 84.3 1.0 55 209-283 3-57 (64)
18 2ct2_A Tripartite motif protei 99.0 6.6E-10 2.3E-14 83.8 5.6 60 204-283 10-69 (88)
19 1chc_A Equine herpes virus-1 r 99.0 3.7E-10 1.3E-14 81.7 3.8 50 207-282 3-52 (68)
20 2d8t_A Dactylidin, ring finger 98.9 4.1E-10 1.4E-14 82.7 2.5 53 205-284 11-63 (71)
21 2djb_A Polycomb group ring fin 98.9 1.8E-09 6.1E-14 79.4 5.2 51 207-283 13-63 (72)
22 2d8s_A Cellular modulator of i 98.9 1.3E-09 4.4E-14 83.4 4.6 56 206-284 12-72 (80)
23 2csy_A Zinc finger protein 183 98.8 2.6E-09 9E-14 80.1 5.2 49 206-281 12-60 (81)
24 2ysl_A Tripartite motif-contai 98.8 3.5E-09 1.2E-13 77.4 4.6 54 206-283 17-70 (73)
25 2ecn_A Ring finger protein 141 98.8 4.8E-10 1.6E-14 81.7 -0.2 49 207-283 13-61 (70)
26 4ayc_A E3 ubiquitin-protein li 98.8 2.5E-09 8.4E-14 88.4 2.6 48 209-283 53-100 (138)
27 2ecy_A TNF receptor-associated 98.8 9E-09 3.1E-13 74.2 5.2 51 207-283 13-63 (66)
28 2yur_A Retinoblastoma-binding 98.7 1.1E-08 3.9E-13 75.6 5.4 50 207-281 13-63 (74)
29 2y43_A E3 ubiquitin-protein li 98.7 8E-09 2.8E-13 80.2 4.6 48 209-282 22-69 (99)
30 3lrq_A E3 ubiquitin-protein li 98.7 5.5E-09 1.9E-13 81.9 3.7 50 208-283 21-71 (100)
31 4ap4_A E3 ubiquitin ligase RNF 98.7 6.6E-09 2.3E-13 83.1 2.7 56 208-283 6-61 (133)
32 2ecw_A Tripartite motif-contai 98.6 3.8E-08 1.3E-12 73.1 5.7 56 207-283 17-72 (85)
33 3ztg_A E3 ubiquitin-protein li 98.6 2.9E-08 9.8E-13 75.8 5.0 49 207-280 11-60 (92)
34 1g25_A CDK-activating kinase a 98.6 1.8E-08 6.1E-13 72.4 3.6 53 209-283 3-56 (65)
35 2ecv_A Tripartite motif-contai 98.6 3.8E-08 1.3E-12 73.1 5.5 56 207-283 17-72 (85)
36 4ap4_A E3 ubiquitin ligase RNF 98.6 7.7E-09 2.6E-13 82.8 1.3 58 206-283 69-126 (133)
37 2ckl_A Polycomb group ring fin 98.6 1.9E-08 6.6E-13 79.3 3.1 50 208-283 14-63 (108)
38 2egp_A Tripartite motif-contai 98.6 2.2E-08 7.7E-13 73.9 2.8 57 207-283 10-66 (79)
39 1jm7_A BRCA1, breast cancer ty 98.6 3.6E-08 1.2E-12 77.5 3.9 51 209-283 21-71 (112)
40 3fl2_A E3 ubiquitin-protein li 98.6 3.4E-08 1.1E-12 79.8 3.8 49 208-282 51-99 (124)
41 2ysj_A Tripartite motif-contai 98.6 8.1E-08 2.8E-12 68.4 5.3 47 206-276 17-63 (63)
42 1t1h_A Gspef-atpub14, armadill 98.5 5.3E-08 1.8E-12 72.1 3.8 50 208-283 7-56 (78)
43 2ecj_A Tripartite motif-contai 98.5 9.1E-08 3.1E-12 66.6 4.5 46 207-276 13-58 (58)
44 3hct_A TNF receptor-associated 98.5 9.5E-08 3.3E-12 76.7 3.8 50 207-283 16-66 (118)
45 3nw0_A Non-structural maintena 98.4 9.6E-08 3.3E-12 86.6 4.0 52 208-283 179-230 (238)
46 2ckl_B Ubiquitin ligase protei 98.4 1.3E-07 4.6E-12 79.8 3.8 50 208-282 53-102 (165)
47 1e4u_A Transcriptional repress 98.4 4E-07 1.4E-11 69.0 5.6 57 206-284 8-64 (78)
48 1z6u_A NP95-like ring finger p 98.4 2E-07 6.8E-12 78.5 3.9 50 208-283 77-126 (150)
49 1rmd_A RAG1; V(D)J recombinati 98.3 3E-07 1E-11 73.2 3.9 49 209-283 23-71 (116)
50 2y1n_A E3 ubiquitin-protein li 98.3 2.6E-07 8.9E-12 89.4 3.6 50 209-284 332-381 (389)
51 3l11_A E3 ubiquitin-protein li 98.3 9.3E-08 3.2E-12 76.0 0.4 50 207-282 13-62 (115)
52 1vyx_A ORF K3, K3RING; zinc-bi 98.2 1.1E-06 3.9E-11 63.5 5.1 55 206-283 3-60 (60)
53 1bor_A Transcription factor PM 98.2 4.5E-07 1.5E-11 63.9 2.2 51 205-285 2-52 (56)
54 2kr4_A Ubiquitin conjugation f 98.1 1.6E-06 5.5E-11 66.2 4.3 50 208-284 13-62 (85)
55 3knv_A TNF receptor-associated 98.1 5.6E-07 1.9E-11 75.1 1.4 50 207-282 29-78 (141)
56 1jm7_B BARD1, BRCA1-associated 98.1 7.3E-07 2.5E-11 71.4 1.5 46 209-283 22-68 (117)
57 2kre_A Ubiquitin conjugation f 98.0 2.1E-06 7.1E-11 67.8 2.7 50 208-284 28-77 (100)
58 1wgm_A Ubiquitin conjugation f 98.0 3.1E-06 1.1E-10 66.6 3.6 50 208-284 21-71 (98)
59 3hcs_A TNF receptor-associated 97.9 4.3E-06 1.5E-10 70.7 3.6 51 207-283 16-66 (170)
60 2c2l_A CHIP, carboxy terminus 97.9 7E-06 2.4E-10 73.1 4.0 49 208-283 207-256 (281)
61 2vje_A E3 ubiquitin-protein li 97.9 5.9E-06 2E-10 59.8 2.4 52 208-284 7-59 (64)
62 2vje_B MDM4 protein; proto-onc 97.9 6E-06 2E-10 59.6 2.4 53 207-284 5-58 (63)
63 4ic3_A E3 ubiquitin-protein li 97.8 4E-06 1.4E-10 62.1 0.6 47 208-285 23-70 (74)
64 2f42_A STIP1 homology and U-bo 97.6 4.9E-05 1.7E-09 66.2 4.3 50 208-284 105-155 (179)
65 2yu4_A E3 SUMO-protein ligase 97.5 3.8E-05 1.3E-09 59.4 3.0 56 208-283 6-64 (94)
66 2ecg_A Baculoviral IAP repeat- 97.5 7.1E-05 2.4E-09 55.2 3.9 46 209-285 25-71 (75)
67 2bay_A PRE-mRNA splicing facto 97.5 5E-05 1.7E-09 54.8 2.8 51 210-286 4-54 (61)
68 2ea5_A Cell growth regulator w 97.5 0.00013 4.3E-09 53.5 4.9 50 206-286 12-62 (68)
69 1wim_A KIAA0161 protein; ring 97.2 0.00012 4.2E-09 56.1 2.4 56 208-279 4-61 (94)
70 3htk_C E3 SUMO-protein ligase 97.0 0.00057 1.9E-08 63.1 4.5 52 208-283 180-233 (267)
71 3t6p_A Baculoviral IAP repeat- 96.8 0.00024 8.4E-09 67.5 0.5 47 208-285 294-341 (345)
72 2yho_A E3 ubiquitin-protein li 96.5 0.00051 1.8E-08 51.6 0.4 45 209-284 18-63 (79)
73 2a7l_A Hypothetical ubiquitin- 96.0 0.031 1E-06 46.2 8.8 83 17-99 25-135 (136)
74 2h2y_A Ubiquitin-conjugating e 95.7 0.11 3.6E-06 42.7 11.0 86 14-99 20-130 (136)
75 2fo3_A Ubiquitin-conjugating e 95.7 0.087 3E-06 42.5 10.0 85 16-100 8-117 (125)
76 2ayv_A Ubiquitin-conjugating e 95.5 0.12 3.9E-06 44.0 10.6 93 6-99 13-130 (166)
77 2aak_A UBC1, ubiquitin conjuga 95.3 0.11 3.6E-06 43.3 9.6 83 16-99 6-113 (152)
78 1zdn_A Ubiquitin-conjugating e 95.2 0.17 5.7E-06 42.4 10.6 87 12-99 11-122 (158)
79 3rcz_B SUMO-conjugating enzyme 95.1 0.12 4E-06 43.8 9.3 86 13-99 9-126 (163)
80 1zuo_A Hypothetical protein LO 95.1 0.14 4.9E-06 44.2 10.0 89 12-100 25-154 (186)
81 1jat_A Ubiquitin-conjugating e 95.0 0.13 4.3E-06 43.0 9.1 82 17-99 8-114 (155)
82 4gpr_A Ubiquitin-conjugating e 95.0 0.12 4.2E-06 42.9 9.0 83 16-99 6-113 (151)
83 2bep_A Ubiquitin-conjugating e 94.9 0.19 6.4E-06 42.1 10.1 84 16-99 10-121 (159)
84 2r0j_A Ubiquitin carrier prote 94.9 0.18 6.3E-06 41.7 9.8 82 17-99 4-110 (149)
85 2c2v_B Ubiquitin-conjugating e 94.9 0.16 5.4E-06 42.4 9.4 82 17-99 8-114 (154)
86 3h8k_A Ubiquitin-conjugating e 94.8 0.19 6.4E-06 42.2 9.8 84 16-99 5-126 (164)
87 2c4o_A Ubiquitin-conjugating e 94.7 0.26 9E-06 41.7 10.5 87 13-99 18-128 (165)
88 4ds2_A Ubiquitin-conjugating e 94.6 0.19 6.5E-06 42.5 9.5 83 16-99 10-131 (167)
89 1z2u_A Ubiquitin-conjugating e 94.6 0.23 8E-06 41.1 9.8 84 16-99 6-113 (150)
90 2awf_A Ubiquitin-conjugating e 94.6 0.27 9.1E-06 41.9 10.4 91 9-99 12-140 (172)
91 3k9o_A Ubiquitin-conjugating e 94.5 0.28 9.7E-06 42.6 10.5 84 16-99 7-118 (201)
92 1fxt_A Ubiquitin-conjugating e 94.4 0.31 1E-05 40.3 10.0 83 17-99 4-112 (149)
93 2e2c_A Ubiquitin conjugating e 94.3 0.29 1E-05 40.8 9.9 85 14-99 9-118 (156)
94 1wzv_A Ubiquitin-conjugating e 94.3 0.27 9.2E-06 40.9 9.6 83 16-99 6-114 (155)
95 2gjd_A Ubiquitin-conjugating e 94.3 0.13 4.3E-06 43.1 7.5 84 16-99 6-120 (157)
96 3bzh_A Ubiquitin-conjugating e 94.2 0.23 8E-06 43.2 9.3 87 13-99 47-157 (194)
97 1ayz_A UBC2, ubiquitin-conjuga 94.1 0.32 1.1E-05 41.4 9.8 83 16-99 6-113 (169)
98 2pwq_A Ubiquitin conjugating e 94.1 0.36 1.2E-05 42.8 10.5 91 9-99 18-133 (216)
99 1i7k_A Ubiquitin-conjugating e 94.0 0.22 7.5E-06 42.9 8.6 87 12-99 28-139 (179)
100 3fn1_B NEDD8-conjugating enzym 93.9 0.24 8.2E-06 41.7 8.6 89 10-99 10-129 (167)
101 1c4z_D UBCH7, ubiquitin conjug 93.7 0.25 8.6E-06 41.0 8.3 82 17-99 5-112 (154)
102 2q0v_A Ubiquitin-conjugating e 93.7 0.26 8.9E-06 41.5 8.3 84 16-99 23-136 (156)
103 2grr_A Ubiquitin-conjugating e 93.5 0.27 9.2E-06 41.3 8.2 84 15-99 8-123 (161)
104 1y8x_A Ubiquitin-conjugating e 93.5 0.53 1.8E-05 39.5 9.9 85 14-99 6-113 (160)
105 2ucz_A UBC7, ubiquitin conjuga 93.5 0.56 1.9E-05 39.3 10.1 84 16-99 6-127 (165)
106 1jat_B Ubiquitin-conjugating e 93.4 0.75 2.6E-05 37.5 10.5 83 17-99 9-121 (138)
107 3rz3_A Ubiquitin-conjugating e 93.2 0.46 1.6E-05 40.8 9.3 86 14-99 7-130 (183)
108 3ceg_A Baculoviral IAP repeat- 93.2 0.49 1.7E-05 44.5 10.2 91 9-99 71-202 (323)
109 1yrv_A Ubiquitin-conjugating l 93.2 0.69 2.3E-05 39.3 10.2 86 14-99 23-135 (169)
110 1yh2_A HSPC150 protein similar 93.0 0.9 3.1E-05 38.4 10.7 86 14-99 4-117 (169)
111 3o2u_A NEDD8-conjugating enzym 92.9 0.78 2.7E-05 39.7 10.3 89 10-99 25-142 (190)
112 3e46_A Ubiquitin-conjugating e 92.8 0.62 2.1E-05 42.3 10.0 86 14-99 57-170 (253)
113 2f4w_A Ubiquitin-conjugating e 92.7 0.45 1.5E-05 41.1 8.5 88 12-99 12-124 (187)
114 1yf9_A Ubiquitin carrier prote 92.2 0.74 2.5E-05 39.2 9.1 80 16-95 14-114 (171)
115 2nvu_C NEDD8-conjugating enzym 92.2 1.1 3.8E-05 38.3 10.3 88 11-99 23-133 (180)
116 2y9m_A Ubiquitin-conjugating e 92.1 0.93 3.2E-05 38.4 9.7 85 15-99 7-130 (172)
117 2f4z_A Tgtwinscan_2721 - E2 do 92.0 0.97 3.3E-05 39.3 9.8 86 14-99 32-155 (193)
118 2a4d_A Ubiquitin-conjugating e 91.9 1.3 4.4E-05 37.4 10.2 85 15-99 26-141 (160)
119 2z5d_A Ubiquitin-conjugating e 91.3 0.45 1.6E-05 41.0 6.8 83 14-96 25-128 (179)
120 2onu_A Ubiquitin-conjugating e 90.8 0.73 2.5E-05 38.3 7.5 79 17-95 5-105 (152)
121 2lri_C Autoimmune regulator; Z 90.5 0.12 4.1E-06 37.7 2.1 49 208-279 11-59 (66)
122 4ddg_A Ubiquitin-conjugating e 90.3 1 3.5E-05 43.1 9.0 83 16-99 5-112 (399)
123 2hlw_A Ubiquitin-conjugating e 90.2 1.7 5.9E-05 36.9 9.4 85 15-99 36-151 (170)
124 3vk6_A E3 ubiquitin-protein li 90.1 0.17 5.8E-06 40.2 2.8 32 240-281 17-48 (101)
125 1tte_A Ubiquitin-conjugating e 89.6 0.68 2.3E-05 41.0 6.6 83 17-99 5-113 (215)
126 1wil_A KIAA1045 protein; ring 88.9 0.41 1.4E-05 37.1 4.0 34 208-255 14-47 (89)
127 2l5u_A Chromodomain-helicase-D 85.3 0.33 1.1E-05 34.5 1.6 52 205-279 7-58 (61)
128 2ebk_A RWD domain-containing p 85.1 6.1 0.00021 31.1 9.3 60 14-73 7-78 (128)
129 2ebm_A RWD domain-containing p 82.8 3.2 0.00011 32.7 6.7 60 14-73 10-77 (128)
130 3u5n_A E3 ubiquitin-protein li 81.9 0.24 8.1E-06 43.1 -0.4 54 205-281 3-56 (207)
131 1mm2_A MI2-beta; PHD, zinc fin 80.1 0.35 1.2E-05 34.4 0.0 51 206-279 6-56 (61)
132 3obq_A Tumor susceptibility ge 78.9 4.4 0.00015 33.8 6.4 51 49-100 65-137 (146)
133 4gne_A Histone-lysine N-methyl 78.5 0.69 2.4E-05 36.8 1.3 51 205-278 11-61 (107)
134 2puy_A PHD finger protein 21A; 78.2 0.14 4.9E-06 36.1 -2.6 52 208-282 4-55 (60)
135 2k16_A Transcription initiatio 77.2 0.39 1.3E-05 35.1 -0.5 57 204-280 13-69 (75)
136 3o36_A Transcription intermedi 76.5 0.47 1.6E-05 40.3 -0.3 51 208-281 3-53 (184)
137 2vpb_A Hpygo1, pygopus homolog 76.0 1.4 4.9E-05 31.8 2.3 36 206-252 5-40 (65)
138 2ysm_A Myeloid/lymphoid or mix 75.8 0.69 2.4E-05 36.2 0.6 38 208-258 6-43 (111)
139 2yz0_A Serine/threonine-protei 74.8 12 0.00041 29.7 7.8 60 14-73 10-84 (138)
140 1f62_A Transcription factor WS 74.5 1.2 4.2E-05 30.0 1.5 49 211-279 2-50 (51)
141 2day_A Ring finger protein 25; 73.7 11 0.00037 29.5 7.2 55 19-73 13-81 (128)
142 1fp0_A KAP-1 corepressor; PHD 73.4 1.3 4.5E-05 34.1 1.6 58 205-285 21-78 (88)
143 2yql_A PHD finger protein 21A; 73.3 0.29 9.9E-06 34.1 -2.0 50 206-278 6-55 (56)
144 1wen_A Inhibitor of growth fam 71.9 3 0.0001 30.5 3.2 37 235-280 29-66 (71)
145 2yt5_A Metal-response element- 71.1 0.39 1.3E-05 34.2 -1.8 57 207-281 4-63 (66)
146 1weu_A Inhibitor of growth fam 70.9 2 6.9E-05 33.2 2.1 36 235-279 49-85 (91)
147 2z6o_A UFM1-conjugating enzyme 70.0 5.4 0.00018 34.4 4.8 59 13-72 31-104 (172)
148 3v43_A Histone acetyltransfera 68.9 6.1 0.00021 31.0 4.6 38 210-254 6-43 (112)
149 3r3q_A Suppressor protein STP2 68.4 4.1 0.00014 34.6 3.7 47 53-99 83-154 (162)
150 1ukx_A GCN2, GCN2 EIF2alpha ki 67.5 43 0.0015 26.2 10.2 61 12-72 8-84 (137)
151 2ku3_A Bromodomain-containing 64.3 3.7 0.00013 30.1 2.3 53 207-279 14-66 (71)
152 3v43_A Histone acetyltransfera 63.3 1.7 5.8E-05 34.2 0.3 34 236-278 78-111 (112)
153 2kwj_A Zinc finger protein DPF 62.7 2.1 7.1E-05 33.8 0.7 41 211-257 3-43 (114)
154 2daw_A RWD domain containing p 62.3 17 0.00056 29.9 6.3 24 52-75 76-99 (154)
155 2dax_A Protein C21ORF6; RWD do 60.7 27 0.00092 28.3 7.3 24 52-75 74-97 (152)
156 1xwh_A Autoimmune regulator; P 60.6 0.85 2.9E-05 32.8 -1.8 50 207-279 6-55 (66)
157 2jmi_A Protein YNG1, ING1 homo 58.0 1.4 4.7E-05 34.1 -1.0 51 206-278 23-75 (90)
158 2l43_A N-teminal domain from h 55.5 8.2 0.00028 29.2 3.0 57 207-283 23-79 (88)
159 3c6w_A P28ING5, inhibitor of g 54.9 1.6 5.4E-05 30.9 -1.1 35 235-278 22-57 (59)
160 2vnf_A ING 4, P29ING4, inhibit 53.0 1.7 5.9E-05 30.7 -1.2 34 236-278 24-58 (60)
161 4ayb_P DNA-directed RNA polyme 52.5 3.5 0.00012 28.4 0.4 33 236-283 4-36 (48)
162 2lv9_A Histone-lysine N-methyl 51.6 4.3 0.00015 31.3 0.8 50 207-278 26-75 (98)
163 1wev_A Riken cDNA 1110020M19; 51.5 0.92 3.2E-05 34.5 -3.0 56 208-281 15-74 (88)
164 3shb_A E3 ubiquitin-protein li 50.3 1.9 6.3E-05 32.3 -1.4 35 236-278 42-76 (77)
165 1we9_A PHD finger family prote 49.2 6.9 0.00024 27.4 1.5 56 206-279 3-58 (64)
166 1wew_A DNA-binding family prot 43.7 16 0.00053 26.8 2.8 56 207-279 14-72 (78)
167 2g6q_A Inhibitor of growth pro 42.7 3.2 0.00011 29.6 -1.1 35 235-278 24-59 (62)
168 2jun_A Midline-1; B-BOX, TRIM, 39.5 12 0.00041 28.0 1.6 35 209-256 3-38 (101)
169 3asl_A E3 ubiquitin-protein li 38.9 5.6 0.00019 28.9 -0.3 36 236-279 34-69 (70)
170 2ku7_A MLL1 PHD3-CYP33 RRM chi 38.5 25 0.00085 26.9 3.4 35 237-279 4-44 (140)
171 2kgg_A Histone demethylase jar 38.5 10 0.00034 25.7 0.9 32 211-253 4-35 (52)
172 1wep_A PHF8; structural genomi 35.5 40 0.0014 24.5 3.9 60 207-285 10-69 (79)
173 2lq6_A Bromodomain-containing 33.6 19 0.00065 27.2 1.9 34 209-254 17-50 (87)
174 2e6s_A E3 ubiquitin-protein li 33.5 5.9 0.0002 29.4 -1.0 35 236-278 42-76 (77)
175 2rsd_A E3 SUMO-protein ligase 33.1 11 0.00037 27.0 0.4 34 207-252 8-41 (68)
176 3ql9_A Transcriptional regulat 32.3 49 0.0017 27.0 4.3 50 207-279 55-111 (129)
177 3ask_A E3 ubiquitin-protein li 31.3 7.6 0.00026 34.7 -0.8 36 236-279 190-225 (226)
178 3kpa_A Probable ubiquitin fold 31.2 32 0.0011 29.3 3.1 21 52-72 86-106 (168)
179 2e6r_A Jumonji/ARID domain-con 31.0 3.8 0.00013 31.4 -2.5 52 208-279 15-66 (92)
180 2xb1_A Pygopus homolog 2, B-ce 30.9 18 0.00061 28.2 1.4 56 210-281 4-63 (105)
181 3ipj_A PTS system, iiabc compo 28.8 43 0.0015 25.7 3.2 34 16-49 6-40 (95)
182 2jyp_A Aragonite protein AP7; 28.4 26 0.00089 22.1 1.5 11 210-220 10-20 (36)
183 2l7x_A Envelope glycoprotein; 27.0 19 0.00064 26.9 0.8 16 267-282 27-42 (77)
184 2k9h_A Glycoprotein; hantaviru 26.9 19 0.00066 25.5 0.8 13 270-282 28-40 (57)
185 1l8d_A DNA double-strand break 25.6 15 0.00052 28.2 0.1 13 270-282 47-59 (112)
186 1x4i_A Inhibitor of growth pro 25.1 8.3 0.00029 28.0 -1.4 38 235-281 19-57 (70)
187 2lcq_A Putative toxin VAPC6; P 24.0 24 0.00084 28.9 1.1 27 235-280 132-158 (165)
188 2lbm_A Transcriptional regulat 22.5 70 0.0024 26.4 3.6 51 206-279 60-117 (142)
189 2co8_A NEDD9 interacting prote 21.9 73 0.0025 22.7 3.3 30 208-252 14-43 (82)
190 2ri7_A Nucleosome-remodeling f 21.9 37 0.0013 28.0 1.8 54 207-279 6-59 (174)
No 1
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=100.00 E-value=2.8e-77 Score=567.63 Aligned_cols=256 Identities=21% Similarity=0.419 Sum_probs=236.1
Q ss_pred HHHHHHHHHhcccee--eeecCCcceEEEEEEeCCCCEEEEEEEeCCCCCCCCCCccccCCCcccc---ccCccccHHHH
Q 022965 17 RSVYSEIEEVGWEHL--VRLSEDLKFLSFRVIDKKGRVHCMEIQLDKNYPRSPPSISADVPYIFNL---KWSRKSRLKDL 91 (289)
Q Consensus 17 ~~l~~Ei~~igw~~l--~~id~~l~~i~l~~~D~~~R~H~l~i~l~~~yp~~~P~~~~dlP~~f~l---~w~~~s~L~~i 91 (289)
++|+.||++|..+.- +++|.+++.|+|..++ ..|+|+|+++++ ..-.++++||..+.+ --.++|+|.++
T Consensus 109 ~~i~~~~~~l~~~~~~~l~~~~~~s~i~~~~f~-~~~~h~Lel~~~-----~~~v~~h~LP~~~~~~e~l~k~~ssL~~v 182 (381)
T 3k1l_B 109 GNIYYDILALYKSNEYCLQVDEACSMIRFSEFT-DFEQHYLELKIP-----SLLLLDHSLPDCVSLGEMLTKSAGNLEEA 182 (381)
T ss_dssp CCHHHHHHHHHSCSSCEEEECGGGCEEEEEEET-TEEEEEEEEETT-----TCCEEEESSCTTSCHHHHHHHHCCSHHHH
T ss_pred hhHHHHHHHhcCccceEEEecCCccEEEecccc-CccceEEEEecC-----ceEEecccCCcchhHHHHhcCccccHHHH
Confidence 579999999998866 6677889999999995 779999999998 234778899966532 12447899999
Q ss_pred HHHHHHHHHHHHHHHHhHHhhhccceeecCCCCCCCceeEEEEeCCceEEEEEE-eCCCCCCCCceEEecCchhhhHHHH
Q 022965 92 LQQFREHLEKLQEIWNILDEIDKSLWVIDLKNPSRANVCRQINLGYNCIIMLSI-HIDDPSSLPECRFMGSDPMVNSLRK 170 (289)
Q Consensus 92 ~~qF~~~le~lq~fwd~ldeID~~~wVleP~~P~~~~~~RrI~l~~~~sl~i~v-dp~~P~~lP~~~flG~~~~v~~lr~ 170 (289)
++||+++||+||+|||+|||||++||||||++|+|++++||||||++|||+|+| ||++|+|+|+|+|+|++++|++||+
T Consensus 183 ~~qF~~~LE~Lq~FWd~LdeID~~~wVLEP~kPtrs~t~RRIaLgn~vSl~IeV~DP~~Pr~lPe~~FlGpd~~V~~Lr~ 262 (381)
T 3k1l_B 183 LNLFRKLLEDLRPFYDNFMDIDELCHVLQPSPISSKHKTRLFPLKDRVYLKLTIADPFACIASMSLKIIGPTEEVARLRH 262 (381)
T ss_dssp HHHHHHHHHHTHHHHHHHHHHHHHSCCCBSSSCCTTCCEEEEEEETTEEEEEEESCTTSTTTTEEEEEESSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhccccccCCCCCCCCceEEEEeCCCeEEEEEeCCCCCCCcCceeEEECChhHhHHHHH
Confidence 999999999999999999999999999999999999999999999999999999 9999999999999999999999999
Q ss_pred HhhhcccccCCCCchHHHHHHHhcc-cCCCCCCCc------CCCCcccccccccccccchhhccccCCCCCcccccCCCC
Q 022965 171 TWQRNSKRWNKDKPFVENVANLLET-QLPRPPEHE------NNYQQVECGICYAQFLPIDEELGAKSGGGTDYTCDNSSC 243 (289)
Q Consensus 171 ~l~~n~~~Wd~~~~i~~NL~~il~~-~~P~~~~~~------~~~~~~eC~ICy~~~l~~d~~~~~~~g~~Pd~~C~n~~C 243 (289)
+|++|+++||+++++++||+++||+ +||+|+..+ ++++..+|||||++++ ++|++|+++|+|++|
T Consensus 263 ~l~~Nl~~Wd~d~si~eNL~~IL~i~~fP~p~~~~~~~~~e~ee~~~ECaICys~~l--------~~g~lPdk~C~n~~C 334 (381)
T 3k1l_B 263 VLSDGLSNWDSEMNIHKNLLRMFDLCYFPMPDWSDGPKLDEEDNEELRCNICFAYRL--------DGGEVPLVSCDNAKC 334 (381)
T ss_dssp HHHHHHHTCCTTSCHHHHHHHHTTCSSCCCCCGGGCCSCTTCCCSCCSCSSSCCSSC--------TTCCCCCBCCSCTTC
T ss_pred HHhhhhhhcCccCCHHHHHHHHhCccccCCCcccccccccccccCCccCcccceeec--------CCCCCccccccCCcc
Confidence 9999999999999999999999999 899998764 5778999999999997 358999999999999
Q ss_pred CCcchhhHHHHHHhhhccCccccccccCCCCCCCccccccccc
Q 022965 244 SKAFHSVCLGDWLRSITTTRQSYDVLFGNCPYCSEPVAVKISI 286 (289)
Q Consensus 244 ~h~FH~~CL~eWL~~l~~~r~sF~~i~g~CP~Cr~~i~~~~~~ 286 (289)
||.||+.||++||++++++||||++++|+|||||++|++++.+
T Consensus 335 ~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs~sf~~ 377 (381)
T 3k1l_B 335 VLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLSTSFAA 377 (381)
T ss_dssp CCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEEGGGGG
T ss_pred CCccchHHHHHHHHhCCCccccccccCCCCCCCCCcCCccHHH
Confidence 9999999999999999999999999999999999999998754
No 2
>3zqs_A E3 ubiquitin-protein ligase fancl; HET: P6G; 2.00A {Homo sapiens}
Probab=100.00 E-value=3.4e-73 Score=500.59 Aligned_cols=186 Identities=31% Similarity=0.664 Sum_probs=184.8
Q ss_pred hHHHHHHHHHHHhccceeeeecCCcceEEEEEEeCCCCEEEEEEEeCCCCCCCCCCccccCCCccccccCccccHHHHHH
Q 022965 14 SFSRSVYSEIEEVGWEHLVRLSEDLKFLSFRVIDKKGRVHCMEIQLDKNYPRSPPSISADVPYIFNLKWSRKSRLKDLLQ 93 (289)
Q Consensus 14 ~~y~~l~~Ei~~igw~~l~~id~~l~~i~l~~~D~~~R~H~l~i~l~~~yp~~~P~~~~dlP~~f~l~w~~~s~L~~i~~ 93 (289)
+||++|++||++|||+||+++|++|++|+|+++|++||+|.|+|+|+++||+++|+|.+|||++|.++|+++|+|.++++
T Consensus 1 ~~y~~li~Ei~~iGW~~l~~id~~~~~i~l~~~D~~gR~H~l~v~l~~~yp~~~P~~~~DlP~~~~~~w~~~ssL~~v~~ 80 (186)
T 3zqs_A 1 QFYSSLIEEIGTLGWDKLVYADTCFSTIKLKAEDASGREHLITLKLKAKYPAESPDYFVDFPVPFCASWTPQSSLISIYS 80 (186)
T ss_dssp CCSCSHHHHHHHHCGGGEEEECTTSSEEEEEEECTTSCEEEEEEECCTTTTTSCCEEECCCSSCCCCCCCTTCCHHHHHH
T ss_pred ChHHHHHHHHHHhCCceeeeecCCccEEEEEEEeCCCCeEEEEEEECCCCCCCCCeeEEcCCCCcccccCCCccHHHHHH
Confidence 59999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhHHhhhccceeecCCCCCCCceeEEEEeCCceEEEEEEeCCCCCCCCceEEecCchhhhHHHHHhh
Q 022965 94 QFREHLEKLQEIWNILDEIDKSLWVIDLKNPSRANVCRQINLGYNCIIMLSIHIDDPSSLPECRFMGSDPMVNSLRKTWQ 173 (289)
Q Consensus 94 qF~~~le~lq~fwd~ldeID~~~wVleP~~P~~~~~~RrI~l~~~~sl~i~vdp~~P~~lP~~~flG~~~~v~~lr~~l~ 173 (289)
||+++||+||+|||+||+||++||||||++|+||+++||||||+||||+|+|||++|+|+|+|+|+|++++|++||++|+
T Consensus 81 qF~~~Le~lq~Fwd~ldeID~~~wVleP~~Ptr~~~~RRIalg~~vsl~i~vdP~~P~~lPe~~FlG~~~~v~~lr~~~~ 160 (186)
T 3zqs_A 81 QFLAAIESLKAFWDVMDEIDEKTWVLEPEKPPRSATARRIALGNNVSINIEVDPRHPTMLPECFFLGADHVVKPLGIKLS 160 (186)
T ss_dssp HHHHHHHHTHHHHHHHHHHHHHSCEEESSSCCTTCCEEEEEEETTEEEEEECCTTSTTSCCEEEEEECHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhhcceeccCCCCCccCcEEEEEECCCcEEEEEECCCCCCcCCceEEECChHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcccccCCCCchHHHHHHHhcccCCC
Q 022965 174 RNSKRWNKDKPFVENVANLLETQLPR 199 (289)
Q Consensus 174 ~n~~~Wd~~~~i~~NL~~il~~~~P~ 199 (289)
+|+++||+++++++||+++||++||+
T Consensus 161 ~nl~~Wd~~~~i~~NL~~il~i~~Ps 186 (186)
T 3zqs_A 161 RNIHLWDPENSVLQNLKDVLEIDFPA 186 (186)
T ss_dssp HHGGGCCTTSCHHHHHHHHHTCCCCC
T ss_pred hhHhhcCCCCCHHHHHHHHHCCcCCC
Confidence 99999999999999999999999996
No 3
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.27 E-value=2.1e-12 Score=98.00 Aligned_cols=56 Identities=21% Similarity=0.580 Sum_probs=45.7
Q ss_pred CCCcccccccccccccchhhccccCCCCCcccccCCCCCCcchhhHHHHHHhhhccCccccccccCCCCCCCcccccccc
Q 022965 206 NYQQVECGICYAQFLPIDEELGAKSGGGTDYTCDNSSCSKAFHSVCLGDWLRSITTTRQSYDVLFGNCPYCSEPVAVKIS 285 (289)
Q Consensus 206 ~~~~~eC~ICy~~~l~~d~~~~~~~g~~Pd~~C~n~~C~h~FH~~CL~eWL~~l~~~r~sF~~i~g~CP~Cr~~i~~~~~ 285 (289)
.+...+|+||++.+. |++.|. .|+|.||..||++||++ ++ ..+||+|++++..+..
T Consensus 12 ~~~i~~C~IC~~~i~-------------~g~~C~--~C~h~fH~~Ci~kWl~~----~~-----~~~CP~Cr~~w~~~~~ 67 (74)
T 2ct0_A 12 PDAVKICNICHSLLI-------------QGQSCE--TCGIRMHLPCVAKYFQS----NA-----EPRCPHCNDYWPHEIP 67 (74)
T ss_dssp SSSSCBCSSSCCBCS-------------SSEECS--SSCCEECHHHHHHHSTT----CS-----SCCCTTTCSCCCSCCC
T ss_pred cCCCCcCcchhhHcc-------------cCCccC--CCCchhhHHHHHHHHHh----cC-----CCCCCCCcCcCCCCCC
Confidence 456789999999985 567894 99999999999999987 11 2799999999876643
No 4
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=99.25 E-value=6.6e-12 Score=91.42 Aligned_cols=58 Identities=24% Similarity=0.658 Sum_probs=44.2
Q ss_pred CCCCcccccccccccccchhhccccCCCCCcccccCCCCCCcchhhHHHHHHhhhccCccccccccCCCCCCCccccccc
Q 022965 205 NNYQQVECGICYAQFLPIDEELGAKSGGGTDYTCDNSSCSKAFHSVCLGDWLRSITTTRQSYDVLFGNCPYCSEPVAVKI 284 (289)
Q Consensus 205 ~~~~~~eC~ICy~~~l~~d~~~~~~~g~~Pd~~C~n~~C~h~FH~~CL~eWL~~l~~~r~sF~~i~g~CP~Cr~~i~~~~ 284 (289)
+++...+|+||++.+.. +.. . ....|||.||..||.+|++. .++||+||.++...+
T Consensus 10 ~~~~~~~C~IC~~~~~~---------~~~--~--~~~~C~H~fc~~Ci~~~~~~-----------~~~CP~Cr~~~~~~~ 65 (69)
T 2kiz_A 10 EEDTEEKCTICLSILEE---------GED--V--RRLPCMHLFHQVCVDQWLIT-----------NKKCPICRVDIEAQL 65 (69)
T ss_dssp STTCCCSBTTTTBCCCS---------SSC--E--EECTTSCEEEHHHHHHHHHH-----------CSBCTTTCSBSCSCC
T ss_pred cCCCCCCCeeCCccccC---------CCc--E--EEeCCCCHHHHHHHHHHHHc-----------CCCCcCcCccccCcC
Confidence 44567789999998741 111 1 22679999999999999998 578999999988765
Q ss_pred cc
Q 022965 285 SI 286 (289)
Q Consensus 285 ~~ 286 (289)
..
T Consensus 66 ~~ 67 (69)
T 2kiz_A 66 PS 67 (69)
T ss_dssp CC
T ss_pred CC
Confidence 43
No 5
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=99.23 E-value=3.6e-12 Score=88.79 Aligned_cols=52 Identities=35% Similarity=0.786 Sum_probs=39.7
Q ss_pred CcccccccccccccchhhccccCCCCCcccccCCCCCCcchhhHHHHHHhhhccCccccccccCCCCCCCccccc
Q 022965 208 QQVECGICYAQFLPIDEELGAKSGGGTDYTCDNSSCSKAFHSVCLGDWLRSITTTRQSYDVLFGNCPYCSEPVAV 282 (289)
Q Consensus 208 ~~~eC~ICy~~~l~~d~~~~~~~g~~Pd~~C~n~~C~h~FH~~CL~eWL~~l~~~r~sF~~i~g~CP~Cr~~i~~ 282 (289)
+..+|+||++.+.. +..+ -..+.|||.||..||.+|+++ ..+||+||+++.+
T Consensus 4 ~~~~C~IC~~~~~~---------~~~~---~~~~~C~H~f~~~Ci~~w~~~-----------~~~CP~Cr~~~~v 55 (55)
T 1iym_A 4 DGVECAVCLAELED---------GEEA---RFLPRCGHGFHAECVDMWLGS-----------HSTCPLCRLTVVV 55 (55)
T ss_dssp CSCCCTTTCCCCCT---------TSCC---EECSSSCCEECTTHHHHTTTT-----------CCSCSSSCCCSCC
T ss_pred CCCcCccCCccccC---------CCce---EECCCCCCcccHHHHHHHHHc-----------CCcCcCCCCEeEC
Confidence 45689999999752 1111 112469999999999999987 5799999998864
No 6
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.17 E-value=1.5e-11 Score=88.78 Aligned_cols=57 Identities=26% Similarity=0.547 Sum_probs=42.3
Q ss_pred CCCcccccccccccccchhhccccCCCCCcccccCCCCCCcchhhHHHHHHhhhccCccccccccCCCCCCCccccc
Q 022965 206 NYQQVECGICYAQFLPIDEELGAKSGGGTDYTCDNSSCSKAFHSVCLGDWLRSITTTRQSYDVLFGNCPYCSEPVAV 282 (289)
Q Consensus 206 ~~~~~eC~ICy~~~l~~d~~~~~~~g~~Pd~~C~n~~C~h~FH~~CL~eWL~~l~~~r~sF~~i~g~CP~Cr~~i~~ 282 (289)
.+...+|+||++.+.... .+........|||.||..||.+|++. ...||+||++++-
T Consensus 12 ~~~~~~C~IC~~~~~~~~---------~~~~~~~~~~CgH~fc~~Ci~~~~~~-----------~~~CP~Cr~~~~~ 68 (69)
T 2ea6_A 12 PSGTVSCPICMDGYSEIV---------QNGRLIVSTECGHVFCSQCLRDSLKN-----------ANTCPTCRKKINH 68 (69)
T ss_dssp TTCCCCCTTTCCCHHHHT---------TTTCCEEECSSSCEEEHHHHHHHHHH-----------CSSCTTTCCCCCC
T ss_pred CCCCCCCcccCccccccc---------cccCCeEeCCCCChhcHHHHHHHHHc-----------CCCCCCCCCccCc
Confidence 446678999999875110 01111123789999999999999997 5799999999864
No 7
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.17 E-value=1.2e-11 Score=93.98 Aligned_cols=61 Identities=25% Similarity=0.609 Sum_probs=41.5
Q ss_pred Ccccccccccccccc----hhhccccCCCCCcccccCCCCCCcchhhHHHHHHhhhccCccccccccCCCCCCCcccccc
Q 022965 208 QQVECGICYAQFLPI----DEELGAKSGGGTDYTCDNSSCSKAFHSVCLGDWLRSITTTRQSYDVLFGNCPYCSEPVAVK 283 (289)
Q Consensus 208 ~~~eC~ICy~~~l~~----d~~~~~~~g~~Pd~~C~n~~C~h~FH~~CL~eWL~~l~~~r~sF~~i~g~CP~Cr~~i~~~ 283 (289)
.+..|+||++.+... .++.. .+ +..-..++|||.||..||.+||++ ..+||+||+++..+
T Consensus 14 ~~~~C~IC~~~~~~~C~iC~~~~~--~~---~~~~~~~~C~H~FH~~Ci~~Wl~~-----------~~~CP~CR~~~~~~ 77 (81)
T 2ecl_A 14 ECDTCAICRVQVMDACLRCQAENK--QE---DCVVVWGECNHSFHNCCMSLWVKQ-----------NNRCPLCQQDWVVQ 77 (81)
T ss_dssp CCSCBTTTTBCTTSCCTTHHHHTC--TT---TCCEEEETTSCEEEHHHHHHHTTT-----------CCBCTTTCCBCCEE
T ss_pred CCCCCcccChhhhccCcccccccC--CC---ceEEEeCCCCCccChHHHHHHHHh-----------CCCCCCcCCCcchh
Confidence 345799999987420 00000 11 111223579999999999999998 67999999998765
Q ss_pred c
Q 022965 284 I 284 (289)
Q Consensus 284 ~ 284 (289)
-
T Consensus 78 ~ 78 (81)
T 2ecl_A 78 R 78 (81)
T ss_dssp E
T ss_pred h
Confidence 3
No 8
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=99.15 E-value=2.3e-11 Score=84.43 Aligned_cols=51 Identities=25% Similarity=0.548 Sum_probs=39.7
Q ss_pred CcccccccccccccchhhccccCCCCCcccccCCCCCCcchhhHHHHHHhhhccCccccccccCCCCCCCcccc
Q 022965 208 QQVECGICYAQFLPIDEELGAKSGGGTDYTCDNSSCSKAFHSVCLGDWLRSITTTRQSYDVLFGNCPYCSEPVA 281 (289)
Q Consensus 208 ~~~eC~ICy~~~l~~d~~~~~~~g~~Pd~~C~n~~C~h~FH~~CL~eWL~~l~~~r~sF~~i~g~CP~Cr~~i~ 281 (289)
...+|+||++.+.. .+..+ ....|||.||..||.+|++. ...||+||++++
T Consensus 4 ~~~~C~IC~~~~~~--------~~~~~----~~~~CgH~fc~~Ci~~~~~~-----------~~~CP~Cr~~~~ 54 (55)
T 2ecm_A 4 GSSGCPICLEDIHT--------SRVVA----HVLPCGHLLHRTCYEEMLKE-----------GYRCPLCSGPSS 54 (55)
T ss_dssp CCCSCTTTCCCCCT--------TTSCE----EECTTSCEEETTHHHHHHHH-----------TCCCTTSCCSSC
T ss_pred CCCcCcccChhhcC--------CCcCe----EecCCCCcccHHHHHHHHHc-----------CCcCCCCCCcCC
Confidence 45689999998741 11111 23779999999999999998 579999999875
No 9
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.14 E-value=2.4e-11 Score=89.54 Aligned_cols=53 Identities=34% Similarity=0.716 Sum_probs=40.5
Q ss_pred CCCcccccccccccccchhhccccCCCCCcccccCCCCCCcchhhHHHHHHhhhccCccccccccCCCCCCCccccc
Q 022965 206 NYQQVECGICYAQFLPIDEELGAKSGGGTDYTCDNSSCSKAFHSVCLGDWLRSITTTRQSYDVLFGNCPYCSEPVAV 282 (289)
Q Consensus 206 ~~~~~eC~ICy~~~l~~d~~~~~~~g~~Pd~~C~n~~C~h~FH~~CL~eWL~~l~~~r~sF~~i~g~CP~Cr~~i~~ 282 (289)
.+...+|+||++.+.. + .. .....|||.||..||.+|++. ...||+||+++.-
T Consensus 12 ~~~~~~C~IC~~~~~~---------~---~~-~~~~~C~H~f~~~Ci~~~~~~-----------~~~CP~Cr~~~~~ 64 (74)
T 2ep4_A 12 LNLHELCAVCLEDFKP---------R---DE-LGICPCKHAFHRKCLIKWLEV-----------RKVCPLCNMPVLQ 64 (74)
T ss_dssp CCCSCBCSSSCCBCCS---------S---SC-EEEETTTEEEEHHHHHHHHHH-----------CSBCTTTCCBCSS
T ss_pred CCCCCCCcCCCcccCC---------C---Cc-EEEcCCCCEecHHHHHHHHHc-----------CCcCCCcCccccc
Confidence 3456789999999751 1 11 112479999999999999998 5699999998753
No 10
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=99.14 E-value=1.8e-11 Score=94.59 Aligned_cols=54 Identities=28% Similarity=0.704 Sum_probs=41.5
Q ss_pred CCCcccccccccccccchhhccccCCCCCcccccCCCCCCcchhhHHHHHHhhhccCccccccccCCCCCCCcccccc
Q 022965 206 NYQQVECGICYAQFLPIDEELGAKSGGGTDYTCDNSSCSKAFHSVCLGDWLRSITTTRQSYDVLFGNCPYCSEPVAVK 283 (289)
Q Consensus 206 ~~~~~eC~ICy~~~l~~d~~~~~~~g~~Pd~~C~n~~C~h~FH~~CL~eWL~~l~~~r~sF~~i~g~CP~Cr~~i~~~ 283 (289)
.+...+|+||++.+.. +. ......|||.||..||.+||+. .++||+||+++.-.
T Consensus 37 ~~~~~~C~IC~~~~~~---------~~----~~~~l~C~H~Fh~~Ci~~wl~~-----------~~~CP~Cr~~~~~~ 90 (91)
T 2l0b_A 37 VGQEMCCPICCSEYVK---------GD----VATELPCHHYFHKPCVSIWLQK-----------SGTCPVCRCMFPPP 90 (91)
T ss_dssp SSSCSEETTTTEECCT---------TC----EEEEETTTEEEEHHHHHHHHTT-----------TCBCTTTCCBSSCC
T ss_pred cCCCCCCcccChhhcC---------CC----cEEecCCCChHHHHHHHHHHHc-----------CCcCcCcCccCCCC
Confidence 3456789999998752 11 1122569999999999999987 67999999998653
No 11
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=99.14 E-value=1.7e-11 Score=98.59 Aligned_cols=65 Identities=25% Similarity=0.533 Sum_probs=41.7
Q ss_pred cccccccccccccchhhccccCCCCCcccc--cCCCCCCcchhhHHHHHHhhhccCccccccccCCCCCCCccccccc
Q 022965 209 QVECGICYAQFLPIDEELGAKSGGGTDYTC--DNSSCSKAFHSVCLGDWLRSITTTRQSYDVLFGNCPYCSEPVAVKI 284 (289)
Q Consensus 209 ~~eC~ICy~~~l~~d~~~~~~~g~~Pd~~C--~n~~C~h~FH~~CL~eWL~~l~~~r~sF~~i~g~CP~Cr~~i~~~~ 284 (289)
+..|+||++.+...--.-..+.+..|...| ..++|||.||..||.+||++ ..+||+||+++.++-
T Consensus 37 ~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~-----------~~~CP~Cr~~~~~~~ 103 (106)
T 3dpl_R 37 VDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKT-----------RQVCPLDNREWEFQK 103 (106)
T ss_dssp SCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHTT-----------CSBCSSSCSBCCEEE
T ss_pred CCCCccCChhHhCcCchhhccccccCCccceEeecccCcEECHHHHHHHHHc-----------CCcCcCCCCcceeec
Confidence 457999999875210000000001122222 23689999999999999998 689999999987653
No 12
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.13 E-value=1.6e-11 Score=91.10 Aligned_cols=53 Identities=25% Similarity=0.669 Sum_probs=40.9
Q ss_pred CCCcccccccccccccchhhccccCCCCCcccccCCCCCCcchhhHHHHHHhhhccCccccccccCCCCCCCccccc
Q 022965 206 NYQQVECGICYAQFLPIDEELGAKSGGGTDYTCDNSSCSKAFHSVCLGDWLRSITTTRQSYDVLFGNCPYCSEPVAV 282 (289)
Q Consensus 206 ~~~~~eC~ICy~~~l~~d~~~~~~~g~~Pd~~C~n~~C~h~FH~~CL~eWL~~l~~~r~sF~~i~g~CP~Cr~~i~~ 282 (289)
.++..+|+||++.+.. + + ......|||.||..||.+||+. ...||+||+++..
T Consensus 20 ~~~~~~C~IC~~~~~~---------~---~-~~~~l~C~H~fh~~Ci~~w~~~-----------~~~CP~Cr~~~~~ 72 (75)
T 1x4j_A 20 QSEQTLCVVCMCDFES---------R---Q-LLRVLPCNHEFHAKCVDKWLKA-----------NRTCPICRADSGP 72 (75)
T ss_dssp SSSCCEETTTTEECCB---------T---C-EEEEETTTEEEETTHHHHHHHH-----------CSSCTTTCCCCCC
T ss_pred cCCCCCCeECCcccCC---------C---C-eEEEECCCCHhHHHHHHHHHHc-----------CCcCcCcCCcCCC
Confidence 3456789999998751 1 1 1122569999999999999988 5799999998764
No 13
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.11 E-value=3.6e-11 Score=89.47 Aligned_cols=56 Identities=23% Similarity=0.676 Sum_probs=42.5
Q ss_pred CCCCcccccccccccccchhhccccCCCCCcccccCCCCCCcchhhHHHHHHhhhccCccccccccCCCCCCCccccccc
Q 022965 205 NNYQQVECGICYAQFLPIDEELGAKSGGGTDYTCDNSSCSKAFHSVCLGDWLRSITTTRQSYDVLFGNCPYCSEPVAVKI 284 (289)
Q Consensus 205 ~~~~~~eC~ICy~~~l~~d~~~~~~~g~~Pd~~C~n~~C~h~FH~~CL~eWL~~l~~~r~sF~~i~g~CP~Cr~~i~~~~ 284 (289)
..+...+|+||++.+.. + .. .....|||.||..||.+|++. ...||+||+++..+.
T Consensus 11 ~~~~~~~C~IC~~~~~~---------~---~~-~~~~~C~H~fc~~Ci~~~~~~-----------~~~CP~Cr~~~~~~~ 66 (78)
T 2ect_A 11 HVGSGLECPVCKEDYAL---------G---ES-VRQLPCNHLFHDSCIVPWLEQ-----------HDSCPVCRKSLTGQN 66 (78)
T ss_dssp TSSSSCCCTTTTSCCCT---------T---SC-EEECTTSCEEETTTTHHHHTT-----------TCSCTTTCCCCCCSC
T ss_pred cCCCCCCCeeCCccccC---------C---CC-EEEeCCCCeecHHHHHHHHHc-----------CCcCcCcCCccCCcc
Confidence 34466799999998741 1 11 122579999999999999987 579999999987653
No 14
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=99.05 E-value=1e-10 Score=92.98 Aligned_cols=70 Identities=21% Similarity=0.314 Sum_probs=43.6
Q ss_pred cccccccccccccchhhc--cccCCCCCcccccCCCCCCcchhhHHHHHHhhhccCccccccccCCCCCCCccccccc
Q 022965 209 QVECGICYAQFLPIDEEL--GAKSGGGTDYTCDNSSCSKAFHSVCLGDWLRSITTTRQSYDVLFGNCPYCSEPVAVKI 284 (289)
Q Consensus 209 ~~eC~ICy~~~l~~d~~~--~~~~g~~Pd~~C~n~~C~h~FH~~CL~eWL~~l~~~r~sF~~i~g~CP~Cr~~i~~~~ 284 (289)
+.+|+||++.+....... ......-|..+...++|||.||..||.+||+.-.. +. ..+||+||+.+..+.
T Consensus 25 ~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~~~-~~-----~~~CP~CR~~~~~~~ 96 (114)
T 1v87_A 25 EEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNK-DG-----SLQCPSCKTIYGEKT 96 (114)
T ss_dssp SCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCC-SS-----CCBCTTTCCBSSSCS
T ss_pred CCcCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHHHcccC-CC-----CCcCCCCCCccCCCC
Confidence 358999999985321100 00011122223235789999999999999964111 11 569999999887653
No 15
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=99.05 E-value=5.6e-11 Score=86.44 Aligned_cols=58 Identities=29% Similarity=0.623 Sum_probs=42.6
Q ss_pred CCCcccccccccccccchhhccccCCCCCcccccCCCCCCcchhhHHHHHHhhhccCccccccccCCCCCCCcccccc
Q 022965 206 NYQQVECGICYAQFLPIDEELGAKSGGGTDYTCDNSSCSKAFHSVCLGDWLRSITTTRQSYDVLFGNCPYCSEPVAVK 283 (289)
Q Consensus 206 ~~~~~eC~ICy~~~l~~d~~~~~~~g~~Pd~~C~n~~C~h~FH~~CL~eWL~~l~~~r~sF~~i~g~CP~Cr~~i~~~ 283 (289)
.++..+|+||++.+... . .++.. -....|||.||..||.+|++. ...||+||+++..+
T Consensus 7 ~~~~~~C~IC~~~~~~~---~--~~~~~----~~~~~CgH~fc~~Ci~~~~~~-----------~~~CP~Cr~~~~~~ 64 (71)
T 3ng2_A 7 PSGTVSCPICMDGYSEI---V--QNGRL----IVSTECGHVFCSQCLRDSLKN-----------ANTCPTCRKKINHK 64 (71)
T ss_dssp CTTCCBCTTTCCBHHHH---H--TTTCC----EEECTTSCEEEHHHHHHHHHH-----------CSBCTTTCCBCCCC
T ss_pred CCCCCCCcccChhhhcc---c--cccCC----eEeCCCCChHhHHHHHHHHHc-----------CCCCCCCCCccChh
Confidence 34567899999987511 0 01111 123789999999999999987 57999999998754
No 16
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=99.01 E-value=4e-11 Score=98.29 Aligned_cols=64 Identities=25% Similarity=0.552 Sum_probs=0.4
Q ss_pred cccccccccccccchhhccccCCCCCcccc--cCCCCCCcchhhHHHHHHhhhccCccccccccCCCCCCCcccccc
Q 022965 209 QVECGICYAQFLPIDEELGAKSGGGTDYTC--DNSSCSKAFHSVCLGDWLRSITTTRQSYDVLFGNCPYCSEPVAVK 283 (289)
Q Consensus 209 ~~eC~ICy~~~l~~d~~~~~~~g~~Pd~~C--~n~~C~h~FH~~CL~eWL~~l~~~r~sF~~i~g~CP~Cr~~i~~~ 283 (289)
+..|+||++.+.....+-....+..+...| ..++|+|.||..||.+||++ ..+||+||+++.++
T Consensus 48 ~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~~-----------~~~CP~Cr~~~~~~ 113 (117)
T 4a0k_B 48 VDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKT-----------RQVCPLDNREWEFQ 113 (117)
T ss_dssp C----------------------------------------------------------------------------
T ss_pred CCcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHHc-----------CCcCCCCCCeeeee
Confidence 458999999985210000000000112222 12589999999999999998 67999999997654
No 17
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=99.00 E-value=6e-11 Score=84.31 Aligned_cols=55 Identities=31% Similarity=0.647 Sum_probs=40.9
Q ss_pred cccccccccccccchhhccccCCCCCcccccCCCCCCcchhhHHHHHHhhhccCccccccccCCCCCCCcccccc
Q 022965 209 QVECGICYAQFLPIDEELGAKSGGGTDYTCDNSSCSKAFHSVCLGDWLRSITTTRQSYDVLFGNCPYCSEPVAVK 283 (289)
Q Consensus 209 ~~eC~ICy~~~l~~d~~~~~~~g~~Pd~~C~n~~C~h~FH~~CL~eWL~~l~~~r~sF~~i~g~CP~Cr~~i~~~ 283 (289)
..+|+||++.+....+ .+.. ....+|||.||..||.+|+++ ...||+||+++..+
T Consensus 3 ~~~C~IC~~~~~~~~~-----~~~~----~~~~~CgH~fc~~Ci~~~~~~-----------~~~CP~Cr~~~~~~ 57 (64)
T 2xeu_A 3 MVSCPICMDGYSEIVQ-----NGRL----IVSTECGHVFCSQCLRDSLKN-----------ANTCPTCRKKINHK 57 (64)
T ss_dssp CCBCTTTCCBHHHHHH-----TTCC----EEEETTSCEEEHHHHHHHHHH-----------CSBCTTTCCBCTTT
T ss_pred CCCCCccChhhhCccc-----cCCC----EEeCCCCCchhHHHHHHHHHc-----------CCCCCCCCccCCcc
Confidence 4689999998752100 1111 123689999999999999998 57999999998754
No 18
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.96 E-value=6.6e-10 Score=83.76 Aligned_cols=60 Identities=23% Similarity=0.443 Sum_probs=43.0
Q ss_pred cCCCCcccccccccccccchhhccccCCCCCcccccCCCCCCcchhhHHHHHHhhhccCccccccccCCCCCCCcccccc
Q 022965 204 ENNYQQVECGICYAQFLPIDEELGAKSGGGTDYTCDNSSCSKAFHSVCLGDWLRSITTTRQSYDVLFGNCPYCSEPVAVK 283 (289)
Q Consensus 204 ~~~~~~~eC~ICy~~~l~~d~~~~~~~g~~Pd~~C~n~~C~h~FH~~CL~eWL~~l~~~r~sF~~i~g~CP~Cr~~i~~~ 283 (289)
+..+...+|+||++.+.. ....| ....|||.||..||.+|++.-. ....||+||+++...
T Consensus 10 ~~~~~~~~C~IC~~~~~~--------~~~~~----~~~~CgH~fC~~Ci~~~~~~~~--------~~~~CP~Cr~~~~~~ 69 (88)
T 2ct2_A 10 DALREVLECPICMESFTE--------EQLRP----KLLHCGHTICRQCLEKLLASSI--------NGVRCPFCSKITRIT 69 (88)
T ss_dssp CCCCSCCBCTTTCCBCCT--------TSSCE----EECSSSCEEEHHHHHHHHHHCS--------SCBCCTTTCCCBCCS
T ss_pred hhccCCCCCccCCccccc--------cCCCe----EECCCCChhhHHHHHHHHHcCC--------CCcCCCCCCCcccch
Confidence 334456789999998751 11112 2268999999999999999721 136999999987654
No 19
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=98.95 E-value=3.7e-10 Score=81.66 Aligned_cols=50 Identities=30% Similarity=0.675 Sum_probs=39.6
Q ss_pred CCcccccccccccccchhhccccCCCCCcccccCCCCCCcchhhHHHHHHhhhccCccccccccCCCCCCCccccc
Q 022965 207 YQQVECGICYAQFLPIDEELGAKSGGGTDYTCDNSSCSKAFHSVCLGDWLRSITTTRQSYDVLFGNCPYCSEPVAV 282 (289)
Q Consensus 207 ~~~~eC~ICy~~~l~~d~~~~~~~g~~Pd~~C~n~~C~h~FH~~CL~eWL~~l~~~r~sF~~i~g~CP~Cr~~i~~ 282 (289)
+...+|+||++.+. + |. + ..+|||.||..||.+|++. ..+||+||+++..
T Consensus 3 ~~~~~C~IC~~~~~---------~---~~-~--~~~C~H~fc~~Ci~~~~~~-----------~~~CP~Cr~~~~~ 52 (68)
T 1chc_A 3 TVAERCPICLEDPS---------N---YS-M--ALPCLHAFCYVCITRWIRQ-----------NPTCPLCKVPVES 52 (68)
T ss_dssp CCCCCCSSCCSCCC---------S---CE-E--ETTTTEEESTTHHHHHHHH-----------SCSTTTTCCCCCC
T ss_pred CCCCCCeeCCcccc---------C---Cc-E--ecCCCCeeHHHHHHHHHhC-----------cCcCcCCChhhHh
Confidence 34568999999863 1 11 1 2679999999999999987 5799999999864
No 20
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.90 E-value=4.1e-10 Score=82.66 Aligned_cols=53 Identities=17% Similarity=0.440 Sum_probs=41.5
Q ss_pred CCCCcccccccccccccchhhccccCCCCCcccccCCCCCCcchhhHHHHHHhhhccCccccccccCCCCCCCccccccc
Q 022965 205 NNYQQVECGICYAQFLPIDEELGAKSGGGTDYTCDNSSCSKAFHSVCLGDWLRSITTTRQSYDVLFGNCPYCSEPVAVKI 284 (289)
Q Consensus 205 ~~~~~~eC~ICy~~~l~~d~~~~~~~g~~Pd~~C~n~~C~h~FH~~CL~eWL~~l~~~r~sF~~i~g~CP~Cr~~i~~~~ 284 (289)
......+|+||++.+. + | + ...|||.||..||.+|++. ...||+||+++..+.
T Consensus 11 ~~~~~~~C~IC~~~~~---------~---~--~--~~~CgH~fC~~Ci~~~~~~-----------~~~CP~Cr~~~~~~~ 63 (71)
T 2d8t_A 11 PSLTVPECAICLQTCV---------H---P--V--SLPCKHVFCYLCVKGASWL-----------GKRCALCRQEIPEDF 63 (71)
T ss_dssp SSSSCCBCSSSSSBCS---------S---E--E--EETTTEEEEHHHHHHCTTC-----------SSBCSSSCCBCCHHH
T ss_pred cCCCCCCCccCCcccC---------C---C--E--EccCCCHHHHHHHHHHHHC-----------CCcCcCcCchhCHhh
Confidence 3446678999999864 1 2 1 2579999999999999987 579999999987543
No 21
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.88 E-value=1.8e-09 Score=79.39 Aligned_cols=51 Identities=20% Similarity=0.478 Sum_probs=40.7
Q ss_pred CCcccccccccccccchhhccccCCCCCcccccCCCCCCcchhhHHHHHHhhhccCccccccccCCCCCCCcccccc
Q 022965 207 YQQVECGICYAQFLPIDEELGAKSGGGTDYTCDNSSCSKAFHSVCLGDWLRSITTTRQSYDVLFGNCPYCSEPVAVK 283 (289)
Q Consensus 207 ~~~~eC~ICy~~~l~~d~~~~~~~g~~Pd~~C~n~~C~h~FH~~CL~eWL~~l~~~r~sF~~i~g~CP~Cr~~i~~~ 283 (289)
+....|+||++.+. + |- ....|||.||..||.+|++. ...||+||+++..+
T Consensus 13 ~~~~~C~IC~~~~~---------~---p~---~~~~CgH~fC~~Ci~~~~~~-----------~~~CP~Cr~~~~~~ 63 (72)
T 2djb_A 13 TPYILCSICKGYLI---------D---AT---TITECLHTFCKSCIVRHFYY-----------SNRCPKCNIVVHQT 63 (72)
T ss_dssp CGGGSCTTTSSCCS---------S---CE---ECSSSCCEECHHHHHHHHHH-----------CSSCTTTCCCCCSS
T ss_pred CCCCCCCCCChHHH---------C---cC---EECCCCCHHHHHHHHHHHHc-----------CCcCCCcCcccCcc
Confidence 45678999999874 1 21 12489999999999999987 57999999998754
No 22
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.88 E-value=1.3e-09 Score=83.37 Aligned_cols=56 Identities=21% Similarity=0.446 Sum_probs=40.0
Q ss_pred CCCcccccccccccccchhhccccCCCCCcccccCCCCC-----CcchhhHHHHHHhhhccCccccccccCCCCCCCccc
Q 022965 206 NYQQVECGICYAQFLPIDEELGAKSGGGTDYTCDNSSCS-----KAFHSVCLGDWLRSITTTRQSYDVLFGNCPYCSEPV 280 (289)
Q Consensus 206 ~~~~~eC~ICy~~~l~~d~~~~~~~g~~Pd~~C~n~~C~-----h~FH~~CL~eWL~~l~~~r~sF~~i~g~CP~Cr~~i 280 (289)
++...+|.||++.+.+ +.. . -..|+ |.||..||.+||..-. ..+||+||.++
T Consensus 12 ~~~~~~C~IC~~~~~~--------~~~----l--~~pC~C~Gs~h~fH~~Cl~~Wl~~~~---------~~~CplCr~~~ 68 (80)
T 2d8s_A 12 PSSQDICRICHCEGDD--------ESP----L--ITPCHCTGSLHFVHQACLQQWIKSSD---------TRCCELCKYEF 68 (80)
T ss_dssp CTTSCCCSSSCCCCCS--------SSC----E--ECSSSCCSSSCCEETTHHHHHHHHHC---------CSBCSSSCCBC
T ss_pred CCCCCCCeEcCccccC--------CCe----e--EeccccCCcCCeeCHHHHHHHHhhCC---------CCCCCCCCCee
Confidence 3456789999988641 111 1 14564 9999999999999710 24999999998
Q ss_pred cccc
Q 022965 281 AVKI 284 (289)
Q Consensus 281 ~~~~ 284 (289)
.++.
T Consensus 69 ~~~~ 72 (80)
T 2d8s_A 69 IMET 72 (80)
T ss_dssp CCCC
T ss_pred ecCc
Confidence 7654
No 23
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.85 E-value=2.6e-09 Score=80.07 Aligned_cols=49 Identities=22% Similarity=0.533 Sum_probs=40.0
Q ss_pred CCCcccccccccccccchhhccccCCCCCcccccCCCCCCcchhhHHHHHHhhhccCccccccccCCCCCCCcccc
Q 022965 206 NYQQVECGICYAQFLPIDEELGAKSGGGTDYTCDNSSCSKAFHSVCLGDWLRSITTTRQSYDVLFGNCPYCSEPVA 281 (289)
Q Consensus 206 ~~~~~eC~ICy~~~l~~d~~~~~~~g~~Pd~~C~n~~C~h~FH~~CL~eWL~~l~~~r~sF~~i~g~CP~Cr~~i~ 281 (289)
.+....|+||+..+. + | + ...|||.||..||.+|++. ...||+||+++.
T Consensus 12 ~~~~~~C~IC~~~~~---------~---p--~--~~~CgH~fC~~Ci~~~~~~-----------~~~CP~Cr~~~~ 60 (81)
T 2csy_A 12 EEIPFRCFICRQAFQ---------N---P--V--VTKCRHYFCESCALEHFRA-----------TPRCYICDQPTG 60 (81)
T ss_dssp CCCCSBCSSSCSBCC---------S---E--E--ECTTSCEEEHHHHHHHHHH-----------CSBCSSSCCBCC
T ss_pred CCCCCCCcCCCchhc---------C---e--e--EccCCCHhHHHHHHHHHHC-----------CCcCCCcCcccc
Confidence 345678999999874 1 2 1 2689999999999999987 579999999986
No 24
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.81 E-value=3.5e-09 Score=77.37 Aligned_cols=54 Identities=22% Similarity=0.475 Sum_probs=40.6
Q ss_pred CCCcccccccccccccchhhccccCCCCCcccccCCCCCCcchhhHHHHHHhhhccCccccccccCCCCCCCcccccc
Q 022965 206 NYQQVECGICYAQFLPIDEELGAKSGGGTDYTCDNSSCSKAFHSVCLGDWLRSITTTRQSYDVLFGNCPYCSEPVAVK 283 (289)
Q Consensus 206 ~~~~~eC~ICy~~~l~~d~~~~~~~g~~Pd~~C~n~~C~h~FH~~CL~eWL~~l~~~r~sF~~i~g~CP~Cr~~i~~~ 283 (289)
.+....|+||++.+. + | + ...|||.||..||.+|++.. +. ...||+||+++..+
T Consensus 17 ~~~~~~C~IC~~~~~---------~---~--~--~~~CgH~fC~~Ci~~~~~~~---~~-----~~~CP~Cr~~~~~~ 70 (73)
T 2ysl_A 17 LQEEVICPICLDILQ---------K---P--V--TIDCGHNFCLKCITQIGETS---CG-----FFKCPLCKTSVRKN 70 (73)
T ss_dssp CCCCCBCTTTCSBCS---------S---E--E--ECTTCCEEEHHHHHHHCSSS---CS-----CCCCSSSCCCCCCC
T ss_pred CccCCEeccCCcccC---------C---e--E--EcCCCChhhHHHHHHHHHcC---CC-----CCCCCCCCCcCCcc
Confidence 345678999999864 1 2 1 15899999999999999731 11 46999999998754
No 25
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.80 E-value=4.8e-10 Score=81.65 Aligned_cols=49 Identities=24% Similarity=0.588 Sum_probs=40.1
Q ss_pred CCcccccccccccccchhhccccCCCCCcccccCCCCCCcchhhHHHHHHhhhccCccccccccCCCCCCCcccccc
Q 022965 207 YQQVECGICYAQFLPIDEELGAKSGGGTDYTCDNSSCSKAFHSVCLGDWLRSITTTRQSYDVLFGNCPYCSEPVAVK 283 (289)
Q Consensus 207 ~~~~eC~ICy~~~l~~d~~~~~~~g~~Pd~~C~n~~C~h~FH~~CL~eWL~~l~~~r~sF~~i~g~CP~Cr~~i~~~ 283 (289)
....+|+||++.+. + ...+|||.||..||.+|++. ...||+||+++...
T Consensus 13 ~~~~~C~IC~~~~~---------~--------~~~~CgH~fc~~Ci~~~~~~-----------~~~CP~Cr~~~~~~ 61 (70)
T 2ecn_A 13 TDEEECCICMDGRA---------D--------LILPCAHSFCQKCIDKWSDR-----------HRNCPICRLQMTGA 61 (70)
T ss_dssp CCCCCCSSSCCSCC---------S--------EEETTTEEECHHHHHHSSCC-----------CSSCHHHHHCTTCC
T ss_pred CCCCCCeeCCcCcc---------C--------cccCCCCcccHHHHHHHHHC-----------cCcCCCcCCcccCC
Confidence 45678999999864 1 12679999999999999986 67999999998744
No 26
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=98.75 E-value=2.5e-09 Score=88.38 Aligned_cols=48 Identities=27% Similarity=0.834 Sum_probs=38.9
Q ss_pred cccccccccccccchhhccccCCCCCcccccCCCCCCcchhhHHHHHHhhhccCccccccccCCCCCCCcccccc
Q 022965 209 QVECGICYAQFLPIDEELGAKSGGGTDYTCDNSSCSKAFHSVCLGDWLRSITTTRQSYDVLFGNCPYCSEPVAVK 283 (289)
Q Consensus 209 ~~eC~ICy~~~l~~d~~~~~~~g~~Pd~~C~n~~C~h~FH~~CL~eWL~~l~~~r~sF~~i~g~CP~Cr~~i~~~ 283 (289)
+..|+||++.+. + | + ...|||.||..||.+|++. ..+||.||+++..+
T Consensus 53 ~~~C~iC~~~~~---------~---~--~--~~~CgH~fc~~Ci~~~~~~-----------~~~CP~Cr~~~~~~ 100 (138)
T 4ayc_A 53 ELQCIICSEYFI---------E---A--V--TLNCAHSFCSYCINEWMKR-----------KIECPICRKDIKSK 100 (138)
T ss_dssp HSBCTTTCSBCS---------S---E--E--EETTSCEEEHHHHHHHTTT-----------CSBCTTTCCBCCCE
T ss_pred cCCCcccCcccC---------C---c--e--ECCCCCCccHHHHHHHHHc-----------CCcCCCCCCcCCCC
Confidence 347999999874 1 2 1 2579999999999999987 67899999998654
No 27
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.75 E-value=9e-09 Score=74.25 Aligned_cols=51 Identities=22% Similarity=0.523 Sum_probs=39.5
Q ss_pred CCcccccccccccccchhhccccCCCCCcccccCCCCCCcchhhHHHHHHhhhccCccccccccCCCCCCCcccccc
Q 022965 207 YQQVECGICYAQFLPIDEELGAKSGGGTDYTCDNSSCSKAFHSVCLGDWLRSITTTRQSYDVLFGNCPYCSEPVAVK 283 (289)
Q Consensus 207 ~~~~eC~ICy~~~l~~d~~~~~~~g~~Pd~~C~n~~C~h~FH~~CL~eWL~~l~~~r~sF~~i~g~CP~Cr~~i~~~ 283 (289)
+....|+||++.+. + |.. .+|||.||..||.+|++. . ...||.||+++..+
T Consensus 13 ~~~~~C~IC~~~~~---------~---p~~----~~CgH~fC~~Ci~~~~~~---~-------~~~CP~Cr~~~~~~ 63 (66)
T 2ecy_A 13 EDKYKCEKCHLVLC---------S---PKQ----TECGHRFCESCMAALLSS---S-------SPKCTACQESIVKD 63 (66)
T ss_dssp CCCEECTTTCCEES---------S---CCC----CSSSCCCCHHHHHHHHTT---S-------SCCCTTTCCCCCTT
T ss_pred CcCCCCCCCChHhc---------C---eeE----CCCCCHHHHHHHHHHHHh---C-------cCCCCCCCcCCChh
Confidence 34578999999874 1 211 689999999999999963 1 46899999998754
No 28
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=98.73 E-value=1.1e-08 Score=75.65 Aligned_cols=50 Identities=18% Similarity=0.403 Sum_probs=38.0
Q ss_pred CCcccccccccccccchhhccccCCCCCcccccCCC-CCCcchhhHHHHHHhhhccCccccccccCCCCCCCcccc
Q 022965 207 YQQVECGICYAQFLPIDEELGAKSGGGTDYTCDNSS-CSKAFHSVCLGDWLRSITTTRQSYDVLFGNCPYCSEPVA 281 (289)
Q Consensus 207 ~~~~eC~ICy~~~l~~d~~~~~~~g~~Pd~~C~n~~-C~h~FH~~CL~eWL~~l~~~r~sF~~i~g~CP~Cr~~i~ 281 (289)
.....|+||+..+. + |-. .+ |||.||..||.+|++.. + ...||.||+++.
T Consensus 13 ~~~~~C~IC~~~~~---------~---p~~----~~~CgH~fC~~Ci~~~~~~~---~------~~~CP~Cr~~~~ 63 (74)
T 2yur_A 13 PDELLCLICKDIMT---------D---AVV----IPCCGNSYCDECIRTALLES---D------EHTCPTCHQNDV 63 (74)
T ss_dssp CGGGSCSSSCCCCT---------T---CEE----CSSSCCEECTTHHHHHHHHS---S------SSCCSSSCCSSC
T ss_pred CCCCCCcCCChHHh---------C---CeE----cCCCCCHHHHHHHHHHHHhc---C------CCcCCCCCCcCC
Confidence 45678999999874 1 211 45 99999999999999871 0 258999999853
No 29
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=98.73 E-value=8e-09 Score=80.20 Aligned_cols=48 Identities=29% Similarity=0.701 Sum_probs=38.7
Q ss_pred cccccccccccccchhhccccCCCCCcccccCCCCCCcchhhHHHHHHhhhccCccccccccCCCCCCCccccc
Q 022965 209 QVECGICYAQFLPIDEELGAKSGGGTDYTCDNSSCSKAFHSVCLGDWLRSITTTRQSYDVLFGNCPYCSEPVAV 282 (289)
Q Consensus 209 ~~eC~ICy~~~l~~d~~~~~~~g~~Pd~~C~n~~C~h~FH~~CL~eWL~~l~~~r~sF~~i~g~CP~Cr~~i~~ 282 (289)
...|+||++.+. + |.. ...|||.||..||.+|++. ...||.||+++..
T Consensus 22 ~~~C~IC~~~~~---------~---p~~---~~~CgH~fC~~Ci~~~~~~-----------~~~CP~Cr~~~~~ 69 (99)
T 2y43_A 22 LLRCGICFEYFN---------I---AMI---IPQCSHNYCSLCIRKFLSY-----------KTQCPTCCVTVTE 69 (99)
T ss_dssp HTBCTTTCSBCS---------S---EEE---CTTTCCEEEHHHHHHHHTT-----------CCBCTTTCCBCCG
T ss_pred CCCcccCChhhC---------C---cCE---ECCCCCHhhHHHHHHHHHC-----------CCCCCCCCCcCCh
Confidence 458999999874 1 211 1489999999999999987 5799999999875
No 30
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=98.72 E-value=5.5e-09 Score=81.87 Aligned_cols=50 Identities=28% Similarity=0.757 Sum_probs=40.1
Q ss_pred CcccccccccccccchhhccccCCCCCcccccCCCCCCcchhhHHHHHHhhhccCcccccccc-CCCCCCCcccccc
Q 022965 208 QQVECGICYAQFLPIDEELGAKSGGGTDYTCDNSSCSKAFHSVCLGDWLRSITTTRQSYDVLF-GNCPYCSEPVAVK 283 (289)
Q Consensus 208 ~~~eC~ICy~~~l~~d~~~~~~~g~~Pd~~C~n~~C~h~FH~~CL~eWL~~l~~~r~sF~~i~-g~CP~Cr~~i~~~ 283 (289)
....|+||++.+.. | ..| ..|||.||..||.+|++. . ..||.||.++...
T Consensus 21 ~~~~C~IC~~~~~~------------p-~~~--~~CgH~FC~~Ci~~~~~~-----------~~~~CP~Cr~~~~~~ 71 (100)
T 3lrq_A 21 EVFRCFICMEKLRD------------A-RLC--PHCSKLCCFSCIRRWLTE-----------QRAQCPHCRAPLQLR 71 (100)
T ss_dssp HHTBCTTTCSBCSS------------E-EEC--TTTCCEEEHHHHHHHHHH-----------TCSBCTTTCCBCCGG
T ss_pred CCCCCccCCccccC------------c-ccc--CCCCChhhHHHHHHHHHH-----------CcCCCCCCCCcCCHH
Confidence 34589999998741 2 223 789999999999999998 3 5999999998764
No 31
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=98.67 E-value=6.6e-09 Score=83.14 Aligned_cols=56 Identities=29% Similarity=0.625 Sum_probs=41.1
Q ss_pred CcccccccccccccchhhccccCCCCCcccccCCCCCCcchhhHHHHHHhhhccCccccccccCCCCCCCcccccc
Q 022965 208 QQVECGICYAQFLPIDEELGAKSGGGTDYTCDNSSCSKAFHSVCLGDWLRSITTTRQSYDVLFGNCPYCSEPVAVK 283 (289)
Q Consensus 208 ~~~eC~ICy~~~l~~d~~~~~~~g~~Pd~~C~n~~C~h~FH~~CL~eWL~~l~~~r~sF~~i~g~CP~Cr~~i~~~ 283 (289)
+..+|+||++.+.. .. .++..+ ..++|||.||..||.+||+. ..+||.||+++..+
T Consensus 6 ~~~~C~IC~~~~~~---~~--~~~~~~----~~~~CgH~fc~~Ci~~~~~~-----------~~~CP~Cr~~~~~~ 61 (133)
T 4ap4_A 6 GTVSCPICMDGYSE---IV--QNGRLI----VSTECGHVFCSQCLRDSLKN-----------ANTCPTCRKKINHK 61 (133)
T ss_dssp CSCBCTTTCCBHHH---HH--HTTCCE----EEETTCCEEEHHHHHHHHTT-----------CSBCTTTCCBCTTT
T ss_pred CCCCCcccChhhhC---cc--ccccCe----EecCCCChhhHHHHHHHHHh-----------CCCCCCCCCcCccc
Confidence 45689999998741 10 011111 23789999999999999987 56999999988754
No 32
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=98.64 E-value=3.8e-08 Score=73.10 Aligned_cols=56 Identities=27% Similarity=0.546 Sum_probs=41.4
Q ss_pred CCcccccccccccccchhhccccCCCCCcccccCCCCCCcchhhHHHHHHhhhccCccccccccCCCCCCCcccccc
Q 022965 207 YQQVECGICYAQFLPIDEELGAKSGGGTDYTCDNSSCSKAFHSVCLGDWLRSITTTRQSYDVLFGNCPYCSEPVAVK 283 (289)
Q Consensus 207 ~~~~eC~ICy~~~l~~d~~~~~~~g~~Pd~~C~n~~C~h~FH~~CL~eWL~~l~~~r~sF~~i~g~CP~Cr~~i~~~ 283 (289)
+....|+||+..+. + |. ...|||.||..||.+|++...... ....||+||+++...
T Consensus 17 ~~~~~C~IC~~~~~---------~---p~----~~~CgH~fC~~Ci~~~~~~~~~~~-----~~~~CP~Cr~~~~~~ 72 (85)
T 2ecw_A 17 KEEVTCPICLELLK---------E---PV----SADCNHSFCRACITLNYESNRNTD-----GKGNCPVCRVPYPFG 72 (85)
T ss_dssp CTTTSCTTTCSCCS---------S---CE----ECTTSCCBCHHHHHHHHHHSBCTT-----SCBCCTTTCCCCCTT
T ss_pred ccCCCCcCCChhhC---------c---ce----eCCCCCHHHHHHHHHHHHhccCCC-----CCCCCCCCCCcCCHH
Confidence 35678999999874 1 21 257999999999999998732111 146899999998754
No 33
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=98.63 E-value=2.9e-08 Score=75.81 Aligned_cols=49 Identities=18% Similarity=0.403 Sum_probs=37.9
Q ss_pred CCcccccccccccccchhhccccCCCCCcccccCCC-CCCcchhhHHHHHHhhhccCccccccccCCCCCCCccc
Q 022965 207 YQQVECGICYAQFLPIDEELGAKSGGGTDYTCDNSS-CSKAFHSVCLGDWLRSITTTRQSYDVLFGNCPYCSEPV 280 (289)
Q Consensus 207 ~~~~eC~ICy~~~l~~d~~~~~~~g~~Pd~~C~n~~-C~h~FH~~CL~eWL~~l~~~r~sF~~i~g~CP~Cr~~i 280 (289)
+....|+||+..+. + |- ... |||.|+..||.+|+... + ...||.||+++
T Consensus 11 ~~~~~C~IC~~~~~---------~---p~----~~~~CgH~fC~~Ci~~~~~~~---~------~~~CP~Cr~~~ 60 (92)
T 3ztg_A 11 PDELLCLICKDIMT---------D---AV----VIPCCGNSYCDECIRTALLES---D------EHTCPTCHQND 60 (92)
T ss_dssp CTTTEETTTTEECS---------S---CE----ECTTTCCEECHHHHHHHHHHC---T------TCCCTTTCCSS
T ss_pred CcCCCCCCCChhhc---------C---ce----ECCCCCCHHHHHHHHHHHHhc---C------CCcCcCCCCcC
Confidence 45678999999874 1 21 145 99999999999999861 0 24999999997
No 34
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.63 E-value=1.8e-08 Score=72.45 Aligned_cols=53 Identities=19% Similarity=0.499 Sum_probs=38.6
Q ss_pred ccccccccc-ccccchhhccccCCCCCcccccCCCCCCcchhhHHHHHHhhhccCccccccccCCCCCCCcccccc
Q 022965 209 QVECGICYA-QFLPIDEELGAKSGGGTDYTCDNSSCSKAFHSVCLGDWLRSITTTRQSYDVLFGNCPYCSEPVAVK 283 (289)
Q Consensus 209 ~~eC~ICy~-~~l~~d~~~~~~~g~~Pd~~C~n~~C~h~FH~~CL~eWL~~l~~~r~sF~~i~g~CP~Cr~~i~~~ 283 (289)
+..|+||++ .+. + |...-...+|||.||..||.+|+.. . ...||.||++++.+
T Consensus 3 ~~~C~IC~~~~~~---------~---~~~~~~~~~CgH~fC~~Ci~~~~~~---~-------~~~CP~Cr~~~~~~ 56 (65)
T 1g25_A 3 DQGCPRCKTTKYR---------N---PSLKLMVNVCGHTLCESCVDLLFVR---G-------AGNCPECGTPLRKS 56 (65)
T ss_dssp TTCCSTTTTHHHH---------C---SSCCEEECTTCCCEEHHHHHHHHHT---T-------SSSCTTTCCCCSSC
T ss_pred CCcCCcCCCCccC---------C---CccCeecCCCCCHhHHHHHHHHHHc---C-------CCcCCCCCCccccc
Confidence 457999999 654 1 2211112689999999999999875 1 36899999998643
No 35
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.63 E-value=3.8e-08 Score=73.10 Aligned_cols=56 Identities=20% Similarity=0.455 Sum_probs=41.4
Q ss_pred CCcccccccccccccchhhccccCCCCCcccccCCCCCCcchhhHHHHHHhhhccCccccccccCCCCCCCcccccc
Q 022965 207 YQQVECGICYAQFLPIDEELGAKSGGGTDYTCDNSSCSKAFHSVCLGDWLRSITTTRQSYDVLFGNCPYCSEPVAVK 283 (289)
Q Consensus 207 ~~~~eC~ICy~~~l~~d~~~~~~~g~~Pd~~C~n~~C~h~FH~~CL~eWL~~l~~~r~sF~~i~g~CP~Cr~~i~~~ 283 (289)
+...+|+||+..+. + |. ..+|||.||..||.+|++....... ...||+||+++...
T Consensus 17 ~~~~~C~IC~~~~~---------~---p~----~~~CgH~fC~~Ci~~~~~~~~~~~~-----~~~CP~Cr~~~~~~ 72 (85)
T 2ecv_A 17 KEEVTCPICLELLT---------Q---PL----SLDCGHSFCQACLTANHKKSMLDKG-----ESSCPVCRISYQPE 72 (85)
T ss_dssp CCCCCCTTTCSCCS---------S---CB----CCSSSCCBCTTHHHHHHHHHHHTTS-----CCCCTTTCCSSCSS
T ss_pred cCCCCCCCCCcccC---------C---ce----eCCCCCHHHHHHHHHHHHHhhcCCC-----CCcCCCCCCccCHH
Confidence 35678999999874 1 21 2579999999999999987321111 47999999998754
No 36
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=98.61 E-value=7.7e-09 Score=82.78 Aligned_cols=58 Identities=29% Similarity=0.624 Sum_probs=42.8
Q ss_pred CCCcccccccccccccchhhccccCCCCCcccccCCCCCCcchhhHHHHHHhhhccCccccccccCCCCCCCcccccc
Q 022965 206 NYQQVECGICYAQFLPIDEELGAKSGGGTDYTCDNSSCSKAFHSVCLGDWLRSITTTRQSYDVLFGNCPYCSEPVAVK 283 (289)
Q Consensus 206 ~~~~~eC~ICy~~~l~~d~~~~~~~g~~Pd~~C~n~~C~h~FH~~CL~eWL~~l~~~r~sF~~i~g~CP~Cr~~i~~~ 283 (289)
++...+|+||++.+....+ .+..+ + ...|||.||..||.+||+. ..+||+||+++..+
T Consensus 69 ~~~~~~C~iC~~~~~~~~~-----~~~~~--~--~~~CgH~fc~~Ci~~~~~~-----------~~~CP~Cr~~~~~~ 126 (133)
T 4ap4_A 69 GSGTVSCPICMDGYSEIVQ-----NGRLI--V--STECGHVFCSQCLRDSLKN-----------ANTCPTCRKKINHK 126 (133)
T ss_dssp SSSSCBCTTTCCBHHHHHH-----TTCCE--E--EETTSBEEEHHHHHHHHHH-----------CSBCTTTCCBCCGG
T ss_pred CCCCCCCCCCCCccccccc-----cCcce--E--eCCCCChhhHHHHHHHHHc-----------CCCCCCCCCcCChh
Confidence 3456789999998752111 11211 2 2689999999999999998 67999999998754
No 37
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=98.59 E-value=1.9e-08 Score=79.34 Aligned_cols=50 Identities=22% Similarity=0.555 Sum_probs=39.8
Q ss_pred CcccccccccccccchhhccccCCCCCcccccCCCCCCcchhhHHHHHHhhhccCccccccccCCCCCCCcccccc
Q 022965 208 QQVECGICYAQFLPIDEELGAKSGGGTDYTCDNSSCSKAFHSVCLGDWLRSITTTRQSYDVLFGNCPYCSEPVAVK 283 (289)
Q Consensus 208 ~~~eC~ICy~~~l~~d~~~~~~~g~~Pd~~C~n~~C~h~FH~~CL~eWL~~l~~~r~sF~~i~g~CP~Cr~~i~~~ 283 (289)
....|+||+..+.. |-. ...|||.||..||.+|+.. ...||.||.++...
T Consensus 14 ~~~~C~IC~~~~~~------------p~~---~~~CgH~fC~~Ci~~~~~~-----------~~~CP~Cr~~~~~~ 63 (108)
T 2ckl_A 14 PHLMCVLCGGYFID------------ATT---IIECLHSFCKTCIVRYLET-----------SKYCPICDVQVHKT 63 (108)
T ss_dssp GGTBCTTTSSBCSS------------EEE---ETTTCCEEEHHHHHHHHTS-----------CSBCTTTCCBSCSS
T ss_pred CcCCCccCChHHhC------------cCE---eCCCCChhhHHHHHHHHHh-----------CCcCcCCCcccccc
Confidence 45689999998741 211 1489999999999999987 57999999998753
No 38
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=98.57 E-value=2.2e-08 Score=73.94 Aligned_cols=57 Identities=18% Similarity=0.392 Sum_probs=41.6
Q ss_pred CCcccccccccccccchhhccccCCCCCcccccCCCCCCcchhhHHHHHHhhhccCccccccccCCCCCCCcccccc
Q 022965 207 YQQVECGICYAQFLPIDEELGAKSGGGTDYTCDNSSCSKAFHSVCLGDWLRSITTTRQSYDVLFGNCPYCSEPVAVK 283 (289)
Q Consensus 207 ~~~~eC~ICy~~~l~~d~~~~~~~g~~Pd~~C~n~~C~h~FH~~CL~eWL~~l~~~r~sF~~i~g~CP~Cr~~i~~~ 283 (289)
+....|+||++.+. + |. ...|||.||..||.+|++...... .....||+||+++...
T Consensus 10 ~~~~~C~IC~~~~~---------~---p~----~l~CgH~fC~~Ci~~~~~~~~~~~----~~~~~CP~Cr~~~~~~ 66 (79)
T 2egp_A 10 QEEVTCPICLELLT---------E---PL----SLDCGHSLCRACITVSNKEAVTSM----GGKSSCPVCGISYSFE 66 (79)
T ss_dssp CCCCEETTTTEECS---------S---CC----CCSSSCCCCHHHHSCCCCCCSSSC----CCCCCCSSSCCCCCSS
T ss_pred ccCCCCcCCCcccC---------C---ee----ECCCCCHHHHHHHHHHHHhcccCC----CCCCcCCCCCCcCCHh
Confidence 35678999999874 1 21 257999999999999998622111 1256999999998754
No 39
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.56 E-value=3.6e-08 Score=77.47 Aligned_cols=51 Identities=22% Similarity=0.574 Sum_probs=38.7
Q ss_pred cccccccccccccchhhccccCCCCCcccccCCCCCCcchhhHHHHHHhhhccCccccccccCCCCCCCcccccc
Q 022965 209 QVECGICYAQFLPIDEELGAKSGGGTDYTCDNSSCSKAFHSVCLGDWLRSITTTRQSYDVLFGNCPYCSEPVAVK 283 (289)
Q Consensus 209 ~~eC~ICy~~~l~~d~~~~~~~g~~Pd~~C~n~~C~h~FH~~CL~eWL~~l~~~r~sF~~i~g~CP~Cr~~i~~~ 283 (289)
...|+||++.+. + |. ...|||.||..||.+|+..-.+ ...||.||+++...
T Consensus 21 ~~~C~IC~~~~~---------~---p~----~~~CgH~fC~~Ci~~~~~~~~~--------~~~CP~Cr~~~~~~ 71 (112)
T 1jm7_A 21 ILECPICLELIK---------E---PV----STKCDHIFCKFCMLKLLNQKKG--------PSQCPLCKNDITKR 71 (112)
T ss_dssp HTSCSSSCCCCS---------S---CC----BCTTSCCCCSHHHHHHHHSSSS--------SCCCTTTSCCCCTT
T ss_pred CCCCcccChhhc---------C---eE----ECCCCCHHHHHHHHHHHHhCCC--------CCCCcCCCCcCCHh
Confidence 457999999864 1 21 1579999999999999987210 24899999998754
No 40
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=98.56 E-value=3.4e-08 Score=79.76 Aligned_cols=49 Identities=18% Similarity=0.463 Sum_probs=38.6
Q ss_pred CcccccccccccccchhhccccCCCCCcccccCCCCCCcchhhHHHHHHhhhccCccccccccCCCCCCCccccc
Q 022965 208 QQVECGICYAQFLPIDEELGAKSGGGTDYTCDNSSCSKAFHSVCLGDWLRSITTTRQSYDVLFGNCPYCSEPVAV 282 (289)
Q Consensus 208 ~~~eC~ICy~~~l~~d~~~~~~~g~~Pd~~C~n~~C~h~FH~~CL~eWL~~l~~~r~sF~~i~g~CP~Cr~~i~~ 282 (289)
....|+||+..+.. | + ...|||.||..||..|+.. . ...||.||++++.
T Consensus 51 ~~~~C~IC~~~~~~------------p--~--~~~CgH~fC~~Ci~~~~~~---~-------~~~CP~Cr~~~~~ 99 (124)
T 3fl2_A 51 ETFQCICCQELVFR------------P--I--TTVCQHNVCKDCLDRSFRA---Q-------VFSCPACRYDLGR 99 (124)
T ss_dssp HHTBCTTTSSBCSS------------E--E--ECTTSCEEEHHHHHHHHHT---T-------CCBCTTTCCBCCT
T ss_pred cCCCCCcCChHHcC------------c--E--EeeCCCcccHHHHHHHHhH---C-------cCCCCCCCccCCC
Confidence 34689999998741 2 1 2589999999999999984 0 3499999999865
No 41
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.55 E-value=8.1e-08 Score=68.44 Aligned_cols=47 Identities=23% Similarity=0.504 Sum_probs=35.1
Q ss_pred CCCcccccccccccccchhhccccCCCCCcccccCCCCCCcchhhHHHHHHhhhccCccccccccCCCCCC
Q 022965 206 NYQQVECGICYAQFLPIDEELGAKSGGGTDYTCDNSSCSKAFHSVCLGDWLRSITTTRQSYDVLFGNCPYC 276 (289)
Q Consensus 206 ~~~~~eC~ICy~~~l~~d~~~~~~~g~~Pd~~C~n~~C~h~FH~~CL~eWL~~l~~~r~sF~~i~g~CP~C 276 (289)
-+....|+||++.+. + |.. ..|||.||..||.+|++.. .+ ...||+|
T Consensus 17 ~~~~~~C~IC~~~~~---------~---p~~----~~CgH~fC~~Ci~~~~~~~--~~------~~~CP~C 63 (63)
T 2ysj_A 17 LQEEVICPICLDILQ---------K---PVT----IDCGHNFCLKCITQIGETS--CG------FFKCPLC 63 (63)
T ss_dssp CCCCCBCTTTCSBCS---------S---CEE----CTTSSEECHHHHHHHHHHC--SS------CCCCSCC
T ss_pred CccCCCCCcCCchhC---------C---eEE----eCCCCcchHHHHHHHHHcC--CC------CCcCcCC
Confidence 345678999999874 1 222 5899999999999999851 11 4589998
No 42
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=98.52 E-value=5.3e-08 Score=72.14 Aligned_cols=50 Identities=16% Similarity=0.389 Sum_probs=39.4
Q ss_pred CcccccccccccccchhhccccCCCCCcccccCCCCCCcchhhHHHHHHhhhccCccccccccCCCCCCCcccccc
Q 022965 208 QQVECGICYAQFLPIDEELGAKSGGGTDYTCDNSSCSKAFHSVCLGDWLRSITTTRQSYDVLFGNCPYCSEPVAVK 283 (289)
Q Consensus 208 ~~~eC~ICy~~~l~~d~~~~~~~g~~Pd~~C~n~~C~h~FH~~CL~eWL~~l~~~r~sF~~i~g~CP~Cr~~i~~~ 283 (289)
....|+||++.+. + | +. ..|||.|+..||.+|++. + ...||.||+++...
T Consensus 7 ~~~~C~IC~~~~~---------~---P--v~--~~CgH~fc~~Ci~~~~~~---~-------~~~CP~C~~~~~~~ 56 (78)
T 1t1h_A 7 EYFRCPISLELMK---------D---P--VI--VSTGQTYERSSIQKWLDA---G-------HKTCPKSQETLLHA 56 (78)
T ss_dssp SSSSCTTTSCCCS---------S---E--EE--ETTTEEEEHHHHHHHHTT---T-------CCBCTTTCCBCSSC
T ss_pred ccCCCCCcccccc---------C---C--EE--cCCCCeecHHHHHHHHHH---C-------cCCCCCCcCCCChh
Confidence 4568999999874 1 2 22 479999999999999975 1 46899999998754
No 43
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.51 E-value=9.1e-08 Score=66.58 Aligned_cols=46 Identities=20% Similarity=0.604 Sum_probs=34.9
Q ss_pred CCcccccccccccccchhhccccCCCCCcccccCCCCCCcchhhHHHHHHhhhccCccccccccCCCCCC
Q 022965 207 YQQVECGICYAQFLPIDEELGAKSGGGTDYTCDNSSCSKAFHSVCLGDWLRSITTTRQSYDVLFGNCPYC 276 (289)
Q Consensus 207 ~~~~eC~ICy~~~l~~d~~~~~~~g~~Pd~~C~n~~C~h~FH~~CL~eWL~~l~~~r~sF~~i~g~CP~C 276 (289)
+....|+||++.+. + |. ..+|||.||..||.+|+..+.. ...||+|
T Consensus 13 ~~~~~C~IC~~~~~---------~---p~----~~~CgH~fC~~Ci~~~~~~~~~--------~~~CP~C 58 (58)
T 2ecj_A 13 QVEASCSVCLEYLK---------E---PV----IIECGHNFCKACITRWWEDLER--------DFPCPVC 58 (58)
T ss_dssp CCCCBCSSSCCBCS---------S---CC----CCSSCCCCCHHHHHHHTTSSCC--------SCCCSCC
T ss_pred ccCCCCccCCcccC---------c---cE----eCCCCCccCHHHHHHHHHhcCC--------CCCCCCC
Confidence 45678999999874 1 21 2679999999999999875221 4799998
No 44
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=98.45 E-value=9.5e-08 Score=76.66 Aligned_cols=50 Identities=24% Similarity=0.549 Sum_probs=39.7
Q ss_pred CCcccccccccccccchhhccccCCCCCcccccCCCCCCcchhhHHHHHHhhhccCccccccccC-CCCCCCcccccc
Q 022965 207 YQQVECGICYAQFLPIDEELGAKSGGGTDYTCDNSSCSKAFHSVCLGDWLRSITTTRQSYDVLFG-NCPYCSEPVAVK 283 (289)
Q Consensus 207 ~~~~eC~ICy~~~l~~d~~~~~~~g~~Pd~~C~n~~C~h~FH~~CL~eWL~~l~~~r~sF~~i~g-~CP~Cr~~i~~~ 283 (289)
+....|+||+..+. -| + ...|||.|+..||.+|++. .+ .||.||.++...
T Consensus 16 ~~~~~C~IC~~~~~------------~p--~--~~~CgH~fC~~Ci~~~~~~-----------~~~~CP~Cr~~~~~~ 66 (118)
T 3hct_A 16 ESKYECPICLMALR------------EA--V--QTPCGHRFCKACIIKSIRD-----------AGHKCPVDNEILLEN 66 (118)
T ss_dssp CGGGBCTTTCSBCS------------SE--E--ECTTSCEEEHHHHHHHHHH-----------HCSBCTTTCCBCCGG
T ss_pred CCCCCCCcCChhhc------------Ce--E--ECCcCChhhHHHHHHHHhh-----------CCCCCCCCCCCcCHH
Confidence 35578999999874 12 1 1579999999999999987 33 999999998754
No 45
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=98.44 E-value=9.6e-08 Score=86.58 Aligned_cols=52 Identities=21% Similarity=0.614 Sum_probs=43.4
Q ss_pred CcccccccccccccchhhccccCCCCCcccccCCCCCCcchhhHHHHHHhhhccCccccccccCCCCCCCcccccc
Q 022965 208 QQVECGICYAQFLPIDEELGAKSGGGTDYTCDNSSCSKAFHSVCLGDWLRSITTTRQSYDVLFGNCPYCSEPVAVK 283 (289)
Q Consensus 208 ~~~eC~ICy~~~l~~d~~~~~~~g~~Pd~~C~n~~C~h~FH~~CL~eWL~~l~~~r~sF~~i~g~CP~Cr~~i~~~ 283 (289)
...+|.||++... +++.|.+ |++.||..|+.+|+++ ++ ...||.|+++++..
T Consensus 179 ~i~~C~iC~~iv~-------------~g~~C~~--C~~~~H~~C~~~~~~~----~~-----~~~CP~C~~~W~~~ 230 (238)
T 3nw0_A 179 AVKICNICHSLLI-------------QGQSCET--CGIRMHLPCVAKYFQS----NA-----EPRCPHCNDYWPHE 230 (238)
T ss_dssp TCCBCTTTCSBCS-------------SCEECSS--SCCEECHHHHHHHTTT----CS-----SCBCTTTCCBCCSC
T ss_pred CCCcCcchhhHHh-------------CCcccCc--cChHHHHHHHHHHHHh----CC-----CCCCCCCCCCCCCC
Confidence 4678999999875 6789955 9999999999999987 11 35999999998765
No 46
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=98.41 E-value=1.3e-07 Score=79.76 Aligned_cols=50 Identities=28% Similarity=0.563 Sum_probs=38.7
Q ss_pred CcccccccccccccchhhccccCCCCCcccccCCCCCCcchhhHHHHHHhhhccCccccccccCCCCCCCccccc
Q 022965 208 QQVECGICYAQFLPIDEELGAKSGGGTDYTCDNSSCSKAFHSVCLGDWLRSITTTRQSYDVLFGNCPYCSEPVAV 282 (289)
Q Consensus 208 ~~~eC~ICy~~~l~~d~~~~~~~g~~Pd~~C~n~~C~h~FH~~CL~eWL~~l~~~r~sF~~i~g~CP~Cr~~i~~ 282 (289)
....|+||+..+. + |- .+ ..|||.||..||.+|++. . ...||+||.++..
T Consensus 53 ~~~~C~IC~~~~~---------~---p~-~~--~~CgH~fC~~Ci~~~~~~---~-------~~~CP~Cr~~~~~ 102 (165)
T 2ckl_B 53 SELMCPICLDMLK---------N---TM-TT--KECLHRFCADCIITALRS---G-------NKECPTCRKKLVS 102 (165)
T ss_dssp HHHBCTTTSSBCS---------S---EE-EE--TTTCCEEEHHHHHHHHHT---T-------CCBCTTTCCBCCS
T ss_pred CCCCCcccChHhh---------C---cC-Ee--CCCCChhHHHHHHHHHHh---C-------cCCCCCCCCcCCC
Confidence 3458999999874 1 21 12 589999999999999985 1 4689999999853
No 47
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=98.38 E-value=4e-07 Score=68.99 Aligned_cols=57 Identities=21% Similarity=0.430 Sum_probs=40.1
Q ss_pred CCCcccccccccccccchhhccccCCCCCcccccCCCCCCcchhhHHHHHHhhhccCccccccccCCCCCCCccccccc
Q 022965 206 NYQQVECGICYAQFLPIDEELGAKSGGGTDYTCDNSSCSKAFHSVCLGDWLRSITTTRQSYDVLFGNCPYCSEPVAVKI 284 (289)
Q Consensus 206 ~~~~~eC~ICy~~~l~~d~~~~~~~g~~Pd~~C~n~~C~h~FH~~CL~eWL~~l~~~r~sF~~i~g~CP~Cr~~i~~~~ 284 (289)
.+++..|+||++.+.. ++..-....|||.|+..||..+++. . .+.||.||+++..+.
T Consensus 8 ~~~~~~CpICle~~~~------------~d~~~~p~~CGH~fC~~Cl~~~~~~---~-------~~~CP~CR~~~~~~~ 64 (78)
T 1e4u_A 8 KEDPVECPLCMEPLEI------------DDINFFPCTCGYQICRFCWHRIRTD---E-------NGLCPACRKPYPEDP 64 (78)
T ss_dssp CCCCCBCTTTCCBCCT------------TTTTCCSSTTSCCCCHHHHHHHTTS---S-------CSBCTTTCCBCSSCS
T ss_pred cccCCcCCccCccCcc------------ccccccccCCCCCcCHHHHHHHHhc---C-------CCCCCCCCCccCCCc
Confidence 3456789999997631 1111111369999999999998754 1 479999999987654
No 48
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=98.36 E-value=2e-07 Score=78.51 Aligned_cols=50 Identities=18% Similarity=0.418 Sum_probs=39.3
Q ss_pred CcccccccccccccchhhccccCCCCCcccccCCCCCCcchhhHHHHHHhhhccCccccccccCCCCCCCcccccc
Q 022965 208 QQVECGICYAQFLPIDEELGAKSGGGTDYTCDNSSCSKAFHSVCLGDWLRSITTTRQSYDVLFGNCPYCSEPVAVK 283 (289)
Q Consensus 208 ~~~eC~ICy~~~l~~d~~~~~~~g~~Pd~~C~n~~C~h~FH~~CL~eWL~~l~~~r~sF~~i~g~CP~Cr~~i~~~ 283 (289)
....|.||+..+.. |. ...|||.|+..||.+|++. . ...||.||+++...
T Consensus 77 ~~~~C~IC~~~~~~------------pv----~~~CgH~fC~~Ci~~~~~~---~-------~~~CP~Cr~~~~~~ 126 (150)
T 1z6u_A 77 QSFMCVCCQELVYQ------------PV----TTECFHNVCKDCLQRSFKA---Q-------VFSCPACRHDLGQN 126 (150)
T ss_dssp HHTBCTTTSSBCSS------------EE----ECTTSCEEEHHHHHHHHHT---T-------CCBCTTTCCBCCTT
T ss_pred cCCEeecCChhhcC------------CE----EcCCCCchhHHHHHHHHHh---C-------CCcCCCCCccCCCC
Confidence 34689999998741 21 1689999999999999986 1 23899999998765
No 49
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=98.33 E-value=3e-07 Score=73.22 Aligned_cols=49 Identities=24% Similarity=0.558 Sum_probs=38.8
Q ss_pred cccccccccccccchhhccccCCCCCcccccCCCCCCcchhhHHHHHHhhhccCccccccccCCCCCCCcccccc
Q 022965 209 QVECGICYAQFLPIDEELGAKSGGGTDYTCDNSSCSKAFHSVCLGDWLRSITTTRQSYDVLFGNCPYCSEPVAVK 283 (289)
Q Consensus 209 ~~eC~ICy~~~l~~d~~~~~~~g~~Pd~~C~n~~C~h~FH~~CL~eWL~~l~~~r~sF~~i~g~CP~Cr~~i~~~ 283 (289)
...|+||+..+.. |.. .+|||.|+..||.+|++.. ...||.||.++...
T Consensus 23 ~~~C~IC~~~~~~------------p~~----~~CgH~fC~~Ci~~~~~~~----------~~~CP~Cr~~~~~~ 71 (116)
T 1rmd_A 23 SISCQICEHILAD------------PVE----TSCKHLFCRICILRCLKVM----------GSYCPSCRYPCFPT 71 (116)
T ss_dssp HTBCTTTCSBCSS------------EEE----CTTSCEEEHHHHHHHHHHT----------CSBCTTTCCBCCGG
T ss_pred CCCCCCCCcHhcC------------cEE----cCCCCcccHHHHHHHHhHC----------cCcCCCCCCCCCHh
Confidence 4689999998741 211 6899999999999999861 35899999998753
No 50
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=98.30 E-value=2.6e-07 Score=89.38 Aligned_cols=50 Identities=24% Similarity=0.529 Sum_probs=39.4
Q ss_pred cccccccccccccchhhccccCCCCCcccccCCCCCCcchhhHHHHHHhhhccCccccccccCCCCCCCccccccc
Q 022965 209 QVECGICYAQFLPIDEELGAKSGGGTDYTCDNSSCSKAFHSVCLGDWLRSITTTRQSYDVLFGNCPYCSEPVAVKI 284 (289)
Q Consensus 209 ~~eC~ICy~~~l~~d~~~~~~~g~~Pd~~C~n~~C~h~FH~~CL~eWL~~l~~~r~sF~~i~g~CP~Cr~~i~~~~ 284 (289)
..+|+||++.+. +.+. .+|||.||..||.+|+++ . ...||.||+++....
T Consensus 332 ~~~C~ICle~~~--------------~pv~--lpCGH~FC~~Ci~~wl~~---~-------~~~CP~CR~~i~~~~ 381 (389)
T 2y1n_A 332 FQLCKICAENDK--------------DVKI--EPCGHLMCTSCLTSWQES---E-------GQGCPFCRCEIKGTE 381 (389)
T ss_dssp SSBCTTTSSSBC--------------CEEE--ETTCCEECHHHHHHHHHH---T-------CSBCTTTCCBCCEEE
T ss_pred CCCCCccCcCCC--------------CeEE--eCCCChhhHHHHHHHHhc---C-------CCCCCCCCCccCCce
Confidence 368999998763 1122 789999999999999984 0 579999999987543
No 51
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=98.30 E-value=9.3e-08 Score=76.04 Aligned_cols=50 Identities=20% Similarity=0.598 Sum_probs=39.0
Q ss_pred CCcccccccccccccchhhccccCCCCCcccccCCCCCCcchhhHHHHHHhhhccCccccccccCCCCCCCccccc
Q 022965 207 YQQVECGICYAQFLPIDEELGAKSGGGTDYTCDNSSCSKAFHSVCLGDWLRSITTTRQSYDVLFGNCPYCSEPVAV 282 (289)
Q Consensus 207 ~~~~eC~ICy~~~l~~d~~~~~~~g~~Pd~~C~n~~C~h~FH~~CL~eWL~~l~~~r~sF~~i~g~CP~Cr~~i~~ 282 (289)
.....|+||+..+. + |. ...|||.|+..||.+|+.. + ...||.||++++.
T Consensus 13 ~~~~~C~iC~~~~~---------~---p~----~~~CgH~fC~~Ci~~~~~~---~-------~~~CP~Cr~~~~~ 62 (115)
T 3l11_A 13 LSECQCGICMEILV---------E---PV----TLPCNHTLCKPCFQSTVEK---A-------SLCCPFCRRRVSS 62 (115)
T ss_dssp HHHHBCTTTCSBCS---------S---CE----ECTTSCEECHHHHCCCCCT---T-------TSBCTTTCCBCHH
T ss_pred CCCCCCccCCcccC---------c---ee----EcCCCCHHhHHHHHHHHhH---C-------cCCCCCCCcccCc
Confidence 35678999999874 1 22 2589999999999999965 1 3689999999864
No 52
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=98.24 E-value=1.1e-06 Score=63.45 Aligned_cols=55 Identities=22% Similarity=0.532 Sum_probs=38.3
Q ss_pred CCCcccccccccccccchhhccccCCCCCcccccCCCCCC---cchhhHHHHHHhhhccCccccccccCCCCCCCccccc
Q 022965 206 NYQQVECGICYAQFLPIDEELGAKSGGGTDYTCDNSSCSK---AFHSVCLGDWLRSITTTRQSYDVLFGNCPYCSEPVAV 282 (289)
Q Consensus 206 ~~~~~eC~ICy~~~l~~d~~~~~~~g~~Pd~~C~n~~C~h---~FH~~CL~eWL~~l~~~r~sF~~i~g~CP~Cr~~i~~ 282 (289)
+++...|.||++.. + +.+ ..-| +|.+ .||..||.+||..-. ..+||.|+.++.+
T Consensus 3 ~~~~~~CrIC~~~~---~-------~~l-~~PC---~C~gs~~~~H~~Cl~~W~~~~~---------~~~C~~C~~~~~~ 59 (60)
T 1vyx_A 3 DEDVPVCWICNEEL---G-------NER-FRAC---GCTGELENVHRSCLSTWLTISR---------NTACQICGVVYNT 59 (60)
T ss_dssp TCSCCEETTTTEEC---S-------CCC-CCSC---CCSSGGGSCCHHHHHHHHHHHT---------CSBCTTTCCBCCC
T ss_pred CCCCCEeEEeecCC---C-------Cce-ecCc---CCCCchhhhHHHHHHHHHHhCC---------CCccCCCCCeeec
Confidence 45667899999862 1 111 1113 4655 999999999998611 3689999999876
Q ss_pred c
Q 022965 283 K 283 (289)
Q Consensus 283 ~ 283 (289)
|
T Consensus 60 r 60 (60)
T 1vyx_A 60 R 60 (60)
T ss_dssp C
T ss_pred C
Confidence 4
No 53
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.21 E-value=4.5e-07 Score=63.87 Aligned_cols=51 Identities=24% Similarity=0.474 Sum_probs=38.6
Q ss_pred CCCCcccccccccccccchhhccccCCCCCcccccCCCCCCcchhhHHHHHHhhhccCccccccccCCCCCCCccccccc
Q 022965 205 NNYQQVECGICYAQFLPIDEELGAKSGGGTDYTCDNSSCSKAFHSVCLGDWLRSITTTRQSYDVLFGNCPYCSEPVAVKI 284 (289)
Q Consensus 205 ~~~~~~eC~ICy~~~l~~d~~~~~~~g~~Pd~~C~n~~C~h~FH~~CL~eWL~~l~~~r~sF~~i~g~CP~Cr~~i~~~~ 284 (289)
+++....|+||+..+. + | ....|||.|+..||.+| ...||+||+++....
T Consensus 2 ee~~~~~C~IC~~~~~---------~---p----~~l~CgH~fC~~Ci~~~--------------~~~CP~Cr~~~~~~~ 51 (56)
T 1bor_A 2 EEFQFLRCQQCQAEAK---------C---P----KLLPCLHTLCSGCLEAS--------------GMQCPICQAPWPLGA 51 (56)
T ss_dssp CSCCCSSCSSSCSSCB---------C---C----SCSTTSCCSBTTTCSSS--------------SSSCSSCCSSSSCCS
T ss_pred CcccCCCceEeCCccC---------C---e----EEcCCCCcccHHHHccC--------------CCCCCcCCcEeecCC
Confidence 3456678999999874 1 3 12679999999999762 368999999988754
Q ss_pred c
Q 022965 285 S 285 (289)
Q Consensus 285 ~ 285 (289)
.
T Consensus 52 ~ 52 (56)
T 1bor_A 52 D 52 (56)
T ss_dssp S
T ss_pred c
Confidence 3
No 54
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=98.15 E-value=1.6e-06 Score=66.19 Aligned_cols=50 Identities=6% Similarity=0.008 Sum_probs=41.1
Q ss_pred CcccccccccccccchhhccccCCCCCcccccCCCCCCcchhhHHHHHHhhhccCccccccccCCCCCCCccccccc
Q 022965 208 QQVECGICYAQFLPIDEELGAKSGGGTDYTCDNSSCSKAFHSVCLGDWLRSITTTRQSYDVLFGNCPYCSEPVAVKI 284 (289)
Q Consensus 208 ~~~eC~ICy~~~l~~d~~~~~~~g~~Pd~~C~n~~C~h~FH~~CL~eWL~~l~~~r~sF~~i~g~CP~Cr~~i~~~~ 284 (289)
....|+||+..+. |-+. ..|||.|-+.||.+|+++ .++||.|+++++.+.
T Consensus 13 ~~~~CpI~~~~m~--------------dPV~--~~cGhtf~r~~I~~~l~~-----------~~~cP~~~~~l~~~~ 62 (85)
T 2kr4_A 13 DEFRDPLMDTLMT--------------DPVR--LPSGTVMDRSIILRHLLN-----------SPTDPFNRQMLTESM 62 (85)
T ss_dssp TTTBCTTTCSBCS--------------SEEE--CTTSCEEEHHHHHHHHHH-----------CSBCTTTCCBCCGGG
T ss_pred hheECcccCchhc--------------CCeE--CCCCCEECHHHHHHHHhc-----------CCCCCCCcCCCChHh
Confidence 4568999999975 2233 569999999999999997 689999999987653
No 55
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=98.12 E-value=5.6e-07 Score=75.09 Aligned_cols=50 Identities=22% Similarity=0.427 Sum_probs=38.7
Q ss_pred CCcccccccccccccchhhccccCCCCCcccccCCCCCCcchhhHHHHHHhhhccCccccccccCCCCCCCccccc
Q 022965 207 YQQVECGICYAQFLPIDEELGAKSGGGTDYTCDNSSCSKAFHSVCLGDWLRSITTTRQSYDVLFGNCPYCSEPVAV 282 (289)
Q Consensus 207 ~~~~eC~ICy~~~l~~d~~~~~~~g~~Pd~~C~n~~C~h~FH~~CL~eWL~~l~~~r~sF~~i~g~CP~Cr~~i~~ 282 (289)
+....|+||+..+.. | + ...|||.|+..||.+|++. . ...||.||.++..
T Consensus 29 ~~~~~C~IC~~~~~~------------p--v--~~~CgH~FC~~Ci~~~~~~---~-------~~~CP~Cr~~~~~ 78 (141)
T 3knv_A 29 EAKYLCSACRNVLRR------------P--F--QAQCGHRYCSFCLASILSS---G-------PQNCAACVHEGIY 78 (141)
T ss_dssp CGGGBCTTTCSBCSS------------E--E--ECTTSCEEEHHHHHHHGGG---S-------CEECHHHHHTTCC
T ss_pred CcCcCCCCCChhhcC------------c--E--ECCCCCccCHHHHHHHHhc---C-------CCCCCCCCCcccc
Confidence 356789999998741 3 1 1689999999999999985 1 2389999998743
No 56
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.09 E-value=7.3e-07 Score=71.36 Aligned_cols=46 Identities=24% Similarity=0.603 Sum_probs=36.5
Q ss_pred cccccccccccccchhhccccCCCCCcccccCC-CCCCcchhhHHHHHHhhhccCccccccccCCCCCCCcccccc
Q 022965 209 QVECGICYAQFLPIDEELGAKSGGGTDYTCDNS-SCSKAFHSVCLGDWLRSITTTRQSYDVLFGNCPYCSEPVAVK 283 (289)
Q Consensus 209 ~~eC~ICy~~~l~~d~~~~~~~g~~Pd~~C~n~-~C~h~FH~~CL~eWL~~l~~~r~sF~~i~g~CP~Cr~~i~~~ 283 (289)
...|+||+..+. + |- .. .|||.|+..||..|+. ..||.||.++...
T Consensus 22 ~~~C~IC~~~~~---------~---pv----~~~~CgH~fC~~Ci~~~~~-------------~~CP~Cr~~~~~~ 68 (117)
T 1jm7_B 22 LLRCSRCTNILR---------E---PV----CLGGCEHIFCSNCVSDCIG-------------TGCPVCYTPAWIQ 68 (117)
T ss_dssp TTSCSSSCSCCS---------S---CB----CCCSSSCCBCTTTGGGGTT-------------TBCSSSCCBCSCS
T ss_pred CCCCCCCChHhh---------C---cc----EeCCCCCHHHHHHHHHHhc-------------CCCcCCCCcCccc
Confidence 458999999874 1 21 14 8999999999999987 3899999998543
No 57
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=98.02 E-value=2.1e-06 Score=67.81 Aligned_cols=50 Identities=6% Similarity=0.018 Sum_probs=40.8
Q ss_pred CcccccccccccccchhhccccCCCCCcccccCCCCCCcchhhHHHHHHhhhccCccccccccCCCCCCCccccccc
Q 022965 208 QQVECGICYAQFLPIDEELGAKSGGGTDYTCDNSSCSKAFHSVCLGDWLRSITTTRQSYDVLFGNCPYCSEPVAVKI 284 (289)
Q Consensus 208 ~~~eC~ICy~~~l~~d~~~~~~~g~~Pd~~C~n~~C~h~FH~~CL~eWL~~l~~~r~sF~~i~g~CP~Cr~~i~~~~ 284 (289)
....|+||+..+. |-+. ..|||.|-+.||.+||.. .++||.|+++++...
T Consensus 28 ~~~~CpI~~~~m~--------------dPV~--~~cGhtf~r~~I~~~l~~-----------~~~cP~~~~~l~~~~ 77 (100)
T 2kre_A 28 DEFRDPLMDTLMT--------------DPVR--LPSGTIMDRSIILRHLLN-----------SPTDPFNRQTLTESM 77 (100)
T ss_dssp TTTBCTTTCSBCS--------------SEEE--ETTTEEEEHHHHHHHTTS-----------CSBCSSSCCBCCTTS
T ss_pred HhhCCcCccCccc--------------CCeE--CCCCCEEchHHHHHHHHc-----------CCCCCCCCCCCChhh
Confidence 3568999999875 2233 569999999999999987 589999999987653
No 58
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=98.01 E-value=3.1e-06 Score=66.56 Aligned_cols=50 Identities=14% Similarity=0.098 Sum_probs=41.1
Q ss_pred CcccccccccccccchhhccccCCCCCcccccCCCCC-CcchhhHHHHHHhhhccCccccccccCCCCCCCccccccc
Q 022965 208 QQVECGICYAQFLPIDEELGAKSGGGTDYTCDNSSCS-KAFHSVCLGDWLRSITTTRQSYDVLFGNCPYCSEPVAVKI 284 (289)
Q Consensus 208 ~~~eC~ICy~~~l~~d~~~~~~~g~~Pd~~C~n~~C~-h~FH~~CL~eWL~~l~~~r~sF~~i~g~CP~Cr~~i~~~~ 284 (289)
....|+||+..+. |-+. ..|| |.|-+.||.+||.. .++||.|+++++.+.
T Consensus 21 ~~~~CpI~~~~m~--------------dPV~--~~cG~htf~r~cI~~~l~~-----------~~~cP~~~~~l~~~~ 71 (98)
T 1wgm_A 21 DEFLDPIMSTLMC--------------DPVV--LPSSRVTVDRSTIARHLLS-----------DQTDPFNRSPLTMDQ 71 (98)
T ss_dssp TTTBCTTTCSBCS--------------SEEE--CTTTCCEEEHHHHHHHTTT-----------SCBCTTTCSBCCTTT
T ss_pred HhcCCcCcccccc--------------CCeE--CCCCCeEECHHHHHHHHHh-----------CCCCCCCCCCCChhh
Confidence 3568999999875 2244 6799 99999999999997 579999999987653
No 59
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=97.95 E-value=4.3e-06 Score=70.67 Aligned_cols=51 Identities=22% Similarity=0.439 Sum_probs=39.9
Q ss_pred CCcccccccccccccchhhccccCCCCCcccccCCCCCCcchhhHHHHHHhhhccCccccccccCCCCCCCcccccc
Q 022965 207 YQQVECGICYAQFLPIDEELGAKSGGGTDYTCDNSSCSKAFHSVCLGDWLRSITTTRQSYDVLFGNCPYCSEPVAVK 283 (289)
Q Consensus 207 ~~~~eC~ICy~~~l~~d~~~~~~~g~~Pd~~C~n~~C~h~FH~~CL~eWL~~l~~~r~sF~~i~g~CP~Cr~~i~~~ 283 (289)
+....|+||+..+. -|- . ..|||.|...||.+|++.- ...||.||.+++..
T Consensus 16 ~~~~~C~IC~~~~~------------~pv-~---~~CgH~fC~~Ci~~~~~~~----------~~~CP~Cr~~~~~~ 66 (170)
T 3hcs_A 16 ESKYECPICLMALR------------EAV-Q---TPCGHRFCKACIIKSIRDA----------GHKCPVDNEILLEN 66 (170)
T ss_dssp CGGGBCTTTCSBCS------------SEE-E---CTTSCEEEHHHHHHHHHHH----------CSBCTTTCCBCCGG
T ss_pred CCCCCCCCCChhhc------------CcE-E---CCCCCHHHHHHHHHHHHhC----------CCCCCCCccCcchh
Confidence 35578999999874 131 1 5799999999999999871 23999999998764
No 60
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=97.88 E-value=7e-06 Score=73.06 Aligned_cols=49 Identities=10% Similarity=0.192 Sum_probs=39.4
Q ss_pred CcccccccccccccchhhccccCCCCCcccccCCCCCCcchhhHHHHHHhhhccCccccccccC-CCCCCCcccccc
Q 022965 208 QQVECGICYAQFLPIDEELGAKSGGGTDYTCDNSSCSKAFHSVCLGDWLRSITTTRQSYDVLFG-NCPYCSEPVAVK 283 (289)
Q Consensus 208 ~~~eC~ICy~~~l~~d~~~~~~~g~~Pd~~C~n~~C~h~FH~~CL~eWL~~l~~~r~sF~~i~g-~CP~Cr~~i~~~ 283 (289)
....|+||+..+. +.+. ..|||.|-..||.+|+.. .+ .||.|+++++.+
T Consensus 207 ~~~~c~i~~~~~~--------------dPv~--~~~gh~f~~~~i~~~~~~-----------~~~~cP~~~~~~~~~ 256 (281)
T 2c2l_A 207 DYLCGKISFELMR--------------EPCI--TPSGITYDRKDIEEHLQR-----------VGHFNPVTRSPLTQE 256 (281)
T ss_dssp STTBCTTTCSBCS--------------SEEE--CSSCCEEETTHHHHHHHH-----------TCSSCTTTCCCCCGG
T ss_pred cccCCcCcCCHhc--------------CCeE--CCCCCEECHHHHHHHHHH-----------CCCCCcCCCCCCchh
Confidence 4568999999875 2233 679999999999999987 23 499999998754
No 61
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=97.85 E-value=5.9e-06 Score=59.82 Aligned_cols=52 Identities=15% Similarity=0.324 Sum_probs=38.6
Q ss_pred CcccccccccccccchhhccccCCCCCcccccCCCCCCc-chhhHHHHHHhhhccCccccccccCCCCCCCccccccc
Q 022965 208 QQVECGICYAQFLPIDEELGAKSGGGTDYTCDNSSCSKA-FHSVCLGDWLRSITTTRQSYDVLFGNCPYCSEPVAVKI 284 (289)
Q Consensus 208 ~~~eC~ICy~~~l~~d~~~~~~~g~~Pd~~C~n~~C~h~-FH~~CL~eWL~~l~~~r~sF~~i~g~CP~Cr~~i~~~~ 284 (289)
...+|.||++... +.+-....|||. |=..|+..|.+. .+.||+||++|.-.+
T Consensus 7 ~~~~C~IC~~~~~--------------~~~~~~~pCgH~~~C~~C~~~~~~~-----------~~~CPiCR~~i~~~i 59 (64)
T 2vje_A 7 AIEPCVICQGRPK--------------NGCIVHGKTGHLMACFTCAKKLKKR-----------NKPCPVCRQPIQMIV 59 (64)
T ss_dssp GGSCCTTTSSSCS--------------CEEEEETTEEEEEECHHHHHHHHHT-----------TCCCTTTCCCCCEEE
T ss_pred CcCCCCcCCCCCC--------------CEEEECCCCCChhhHHHHHHHHHHc-----------CCcCCCcCcchhceE
Confidence 4568999998753 112112389999 568999999986 579999999986544
No 62
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=97.85 E-value=6e-06 Score=59.60 Aligned_cols=53 Identities=15% Similarity=0.281 Sum_probs=39.8
Q ss_pred CCcccccccccccccchhhccccCCCCCcccccCCCCCCc-chhhHHHHHHhhhccCccccccccCCCCCCCccccccc
Q 022965 207 YQQVECGICYAQFLPIDEELGAKSGGGTDYTCDNSSCSKA-FHSVCLGDWLRSITTTRQSYDVLFGNCPYCSEPVAVKI 284 (289)
Q Consensus 207 ~~~~eC~ICy~~~l~~d~~~~~~~g~~Pd~~C~n~~C~h~-FH~~CL~eWL~~l~~~r~sF~~i~g~CP~Cr~~i~~~~ 284 (289)
+...+|.||++... +.+-...+|||. |=..|+..|.+. .+.||+||++|.-.+
T Consensus 5 ~~~~~C~IC~~~~~--------------~~~~~~~pCgH~~~C~~C~~~~~~~-----------~~~CPiCR~~i~~~i 58 (63)
T 2vje_B 5 NLLKPCSLCEKRPR--------------DGNIIHGRTGHLVTCFHCARRLKKA-----------GASCPICKKEIQLVI 58 (63)
T ss_dssp GGGSBCTTTSSSBS--------------CEEEEETTEEEEEECHHHHHHHHHT-----------TCBCTTTCCBCCEEE
T ss_pred CcCCCCcccCCcCC--------------CeEEEecCCCCHhHHHHHHHHHHHh-----------CCcCCCcCchhhceE
Confidence 34568999999742 111112489998 999999999876 579999999986544
No 63
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=97.79 E-value=4e-06 Score=62.14 Aligned_cols=47 Identities=19% Similarity=0.473 Sum_probs=36.2
Q ss_pred CcccccccccccccchhhccccCCCCCcccccCCCCCCc-chhhHHHHHHhhhccCccccccccCCCCCCCcccccccc
Q 022965 208 QQVECGICYAQFLPIDEELGAKSGGGTDYTCDNSSCSKA-FHSVCLGDWLRSITTTRQSYDVLFGNCPYCSEPVAVKIS 285 (289)
Q Consensus 208 ~~~eC~ICy~~~l~~d~~~~~~~g~~Pd~~C~n~~C~h~-FH~~CL~eWL~~l~~~r~sF~~i~g~CP~Cr~~i~~~~~ 285 (289)
+...|.||++.+. +.+ ..+|||. |...|+..| ..||+||+++.-.+.
T Consensus 23 ~~~~C~iC~~~~~--------------~~~--~~pCgH~~~C~~C~~~~---------------~~CP~Cr~~i~~~~~ 70 (74)
T 4ic3_A 23 EEKLCKICMDRNI--------------AIV--FVPCGHLVTCKQCAEAV---------------DKCPMCYTVITFKQK 70 (74)
T ss_dssp HHTBCTTTSSSBC--------------CEE--EETTCCBCCCHHHHTTC---------------SBCTTTCCBCSEEEE
T ss_pred cCCCCCCCCCCCC--------------CEE--EcCCCChhHHHHhhhcC---------------ccCCCcCcCccCcEE
Confidence 3458999999763 112 2689999 999999877 489999999876543
No 64
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=97.57 E-value=4.9e-05 Score=66.25 Aligned_cols=50 Identities=10% Similarity=0.161 Sum_probs=40.2
Q ss_pred CcccccccccccccchhhccccCCCCCcccccCCCCCCcchhhHHHHHHhhhccCccccccccC-CCCCCCccccccc
Q 022965 208 QQVECGICYAQFLPIDEELGAKSGGGTDYTCDNSSCSKAFHSVCLGDWLRSITTTRQSYDVLFG-NCPYCSEPVAVKI 284 (289)
Q Consensus 208 ~~~eC~ICy~~~l~~d~~~~~~~g~~Pd~~C~n~~C~h~FH~~CL~eWL~~l~~~r~sF~~i~g-~CP~Cr~~i~~~~ 284 (289)
....|+||...+. |.++ ..|||.|=..||.+||.. .| +||.|+++++...
T Consensus 105 ~~f~CPI~~elm~--------------DPV~--~~~Ghtfer~~I~~~l~~-----------~~~tcP~t~~~l~~~~ 155 (179)
T 2f42_A 105 DYLCGKISFELMR--------------EPCI--TPSGITYDRKDIEEHLQR-----------VGHFDPVTRSPLTQDQ 155 (179)
T ss_dssp GGGBCTTTCSBCS--------------SEEE--CTTSCEEEHHHHHHHHHH-----------TCSBCTTTCCBCCGGG
T ss_pred HhhcccCccccCC--------------CCeE--CCCCCEECHHHHHHHHHh-----------CCCCCCCCcCCCChhh
Confidence 3468999999875 2344 579999999999999987 33 5999999987653
No 65
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.55 E-value=3.8e-05 Score=59.42 Aligned_cols=56 Identities=16% Similarity=0.354 Sum_probs=38.9
Q ss_pred CcccccccccccccchhhccccCCCCCcccccCCCCCCcchhhHHHHHHhhhccCccccccccCCCCC--CCcc-cccc
Q 022965 208 QQVECGICYAQFLPIDEELGAKSGGGTDYTCDNSSCSKAFHSVCLGDWLRSITTTRQSYDVLFGNCPY--CSEP-VAVK 283 (289)
Q Consensus 208 ~~~eC~ICy~~~l~~d~~~~~~~g~~Pd~~C~n~~C~h~FH~~CL~eWL~~l~~~r~sF~~i~g~CP~--Cr~~-i~~~ 283 (289)
....|+||+..+. +-+. .+.|||.|-..||.+||+...+.+. ...||. |++. ++..
T Consensus 6 ~~~~CPI~~~~~~--------------dPV~-~~~cGh~f~r~cI~~~l~~~~~~~~-----~~~CP~tgc~~~~l~~~ 64 (94)
T 2yu4_A 6 SGFTCPITKEEMK--------------KPVK-NKVCGHTYEEDAIVRMIESRQKRKK-----KAYCPQIGCSHTDIRKS 64 (94)
T ss_dssp SCCBCTTTCSBCS--------------SEEE-ESSSCCEEEHHHHHHHHHHHHTTTC-----CBCCCSTTCCCCCBCGG
T ss_pred cEeECcCcCchhc--------------CCEE-cCCCCCeecHHHHHHHHHHccCcCC-----CCCCCcCcCcccccCHh
Confidence 3467999999875 1233 2359999999999999987311111 248999 9876 6544
No 66
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.51 E-value=7.1e-05 Score=55.25 Aligned_cols=46 Identities=20% Similarity=0.480 Sum_probs=34.7
Q ss_pred cccccccccccccchhhccccCCCCCcccccCCCCCCc-chhhHHHHHHhhhccCccccccccCCCCCCCcccccccc
Q 022965 209 QVECGICYAQFLPIDEELGAKSGGGTDYTCDNSSCSKA-FHSVCLGDWLRSITTTRQSYDVLFGNCPYCSEPVAVKIS 285 (289)
Q Consensus 209 ~~eC~ICy~~~l~~d~~~~~~~g~~Pd~~C~n~~C~h~-FH~~CL~eWL~~l~~~r~sF~~i~g~CP~Cr~~i~~~~~ 285 (289)
..+|.||++.+. + | ...+|||. |...|+.. ...||+||+++.-.+.
T Consensus 25 ~~~C~IC~~~~~---------~---~----~~~pCgH~~~C~~C~~~---------------~~~CP~Cr~~i~~~~~ 71 (75)
T 2ecg_A 25 EKLCKICMDRNI---------A---I----VFVPCGHLVTCKQCAEA---------------VDKCPMCYTVITFKQK 71 (75)
T ss_dssp HHSCSSSCSSCC---------C---B----CCSSSCCCCBCHHHHHH---------------CSBCTTTCCBCCCCCB
T ss_pred CCCCCcCCCCCC---------C---E----EEecCCCHHHHHHHhhC---------------CCCCccCCceecCcEE
Confidence 457999998753 1 1 23689999 99999942 3699999999876543
No 67
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=97.50 E-value=5e-05 Score=54.81 Aligned_cols=51 Identities=18% Similarity=0.303 Sum_probs=40.9
Q ss_pred ccccccccccccchhhccccCCCCCcccccCCCCCCcchhhHHHHHHhhhccCccccccccCCCCCCCccccccccc
Q 022965 210 VECGICYAQFLPIDEELGAKSGGGTDYTCDNSSCSKAFHSVCLGDWLRSITTTRQSYDVLFGNCPYCSEPVAVKISI 286 (289)
Q Consensus 210 ~eC~ICy~~~l~~d~~~~~~~g~~Pd~~C~n~~C~h~FH~~CL~eWL~~l~~~r~sF~~i~g~CP~Cr~~i~~~~~~ 286 (289)
..|+||+..+. |-++ ...|||.|=..||.+||+. +|.||.++++++.+-.+
T Consensus 4 ~~CpIs~~~m~--------------dPV~-~~~sG~~yer~~I~~~l~~-----------~~~cP~t~~~L~~~~Li 54 (61)
T 2bay_A 4 MLCAISGKVPR--------------RPVL-SPKSRTIFEKSLLEQYVKD-----------TGNDPITNEPLSIEEIV 54 (61)
T ss_dssp CCCTTTCSCCS--------------SEEE-ETTTTEEEEHHHHHHHHHH-----------HSBCTTTCCBCCGGGCE
T ss_pred EEecCCCCCCC--------------CCEE-eCCCCcEEcHHHHHHHHHh-----------CCCCcCCcCCCChhhcE
Confidence 46999999874 2244 1389999999999999998 68999999999876543
No 68
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.48 E-value=0.00013 Score=53.51 Aligned_cols=50 Identities=18% Similarity=0.547 Sum_probs=37.7
Q ss_pred CCCcccccccccccccchhhccccCCCCCcccccCCCCCCc-chhhHHHHHHhhhccCccccccccCCCCCCCccccccc
Q 022965 206 NYQQVECGICYAQFLPIDEELGAKSGGGTDYTCDNSSCSKA-FHSVCLGDWLRSITTTRQSYDVLFGNCPYCSEPVAVKI 284 (289)
Q Consensus 206 ~~~~~eC~ICy~~~l~~d~~~~~~~g~~Pd~~C~n~~C~h~-FH~~CL~eWL~~l~~~r~sF~~i~g~CP~Cr~~i~~~~ 284 (289)
++...+|.||++... +.+ ...|||. |-..|+.. ...||+||++|...+
T Consensus 12 ~~~~~~C~IC~~~~~--------------~~v--~~pCgH~~~C~~C~~~---------------~~~CP~CR~~i~~~~ 60 (68)
T 2ea5_A 12 EENSKDCVVCQNGTV--------------NWV--LLPCRHTCLCDGCVKY---------------FQQCPMCRQFVQESF 60 (68)
T ss_dssp CCCSSCCSSSSSSCC--------------CCE--ETTTTBCCSCTTHHHH---------------CSSCTTTCCCCCCEE
T ss_pred CCCCCCCCCcCcCCC--------------CEE--EECCCChhhhHHHHhc---------------CCCCCCCCcchhceE
Confidence 345678999998642 122 3789999 99999972 369999999987665
Q ss_pred cc
Q 022965 285 SI 286 (289)
Q Consensus 285 ~~ 286 (289)
..
T Consensus 61 ~i 62 (68)
T 2ea5_A 61 AL 62 (68)
T ss_dssp CC
T ss_pred Ee
Confidence 44
No 69
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=97.23 E-value=0.00012 Score=56.07 Aligned_cols=56 Identities=16% Similarity=0.478 Sum_probs=37.6
Q ss_pred CcccccccccccccchhhccccCCCCCcccccCCCCCCcchhhHHHHHHhhhccCccccccccCCCCC--CCcc
Q 022965 208 QQVECGICYAQFLPIDEELGAKSGGGTDYTCDNSSCSKAFHSVCLGDWLRSITTTRQSYDVLFGNCPY--CSEP 279 (289)
Q Consensus 208 ~~~eC~ICy~~~l~~d~~~~~~~g~~Pd~~C~n~~C~h~FH~~CL~eWL~~l~~~r~sF~~i~g~CP~--Cr~~ 279 (289)
...+|+||++.+.. |+. -....|||.|-..||..+++.....+. +..-.||. |+..
T Consensus 4 ~~~~C~IC~~~~~~------------~~~-~~l~~CgH~FC~~Cl~~~~~~~i~~g~---~~~i~CP~~~C~~~ 61 (94)
T 1wim_A 4 GSSGCKLCLGEYPV------------EQM-TTIAQCQCIFCTLCLKQYVELLIKEGL---ETAISCPDAACPKQ 61 (94)
T ss_dssp SBCCCSSSCCCCBG------------GGE-EEETTTTEEEEHHHHHHHHHHHHHHCS---CCCEECSCTTCSSC
T ss_pred CCcCCcccCccccc------------ccc-eEcCCCCCcccHHHHHHHHHHHhhcCC---cccccCccccCCCC
Confidence 45689999998641 111 112469999999999999986321111 01348999 9998
No 70
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=96.97 E-value=0.00057 Score=63.06 Aligned_cols=52 Identities=19% Similarity=0.513 Sum_probs=39.8
Q ss_pred CcccccccccccccchhhccccCCCCCcccccCCCCCCcchhhHHHHHHhhhccCccccccccCCCCC--CCcccccc
Q 022965 208 QQVECGICYAQFLPIDEELGAKSGGGTDYTCDNSSCSKAFHSVCLGDWLRSITTTRQSYDVLFGNCPY--CSEPVAVK 283 (289)
Q Consensus 208 ~~~eC~ICy~~~l~~d~~~~~~~g~~Pd~~C~n~~C~h~FH~~CL~eWL~~l~~~r~sF~~i~g~CP~--Cr~~i~~~ 283 (289)
....|+||+.++.. |-. ...|||.|=..||.+|++.- . ...||. |+++++..
T Consensus 180 ~el~CPIcl~~f~D------------PVt---s~~CGHsFcR~cI~~~~~~~---~------~~~CPvtGCr~~l~~~ 233 (267)
T 3htk_C 180 IELTCPITCKPYEA------------PLI---SRKCNHVFDRDGIQNYLQGY---T------TRDCPQAACSQVVSMR 233 (267)
T ss_dssp CCSBCTTTSSBCSS------------EEE---ESSSCCEEEHHHHHHHSTTC---S------CEECSGGGCSCEECGG
T ss_pred eeeECcCccCcccC------------Cee---eCCCCCcccHHHHHHHHHhC---C------CCCCCcccccCcCchh
Confidence 45689999999851 321 35899999999999999861 1 258999 99987654
No 71
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=96.78 E-value=0.00024 Score=67.46 Aligned_cols=47 Identities=15% Similarity=0.465 Sum_probs=36.6
Q ss_pred CcccccccccccccchhhccccCCCCCcccccCCCCCCc-chhhHHHHHHhhhccCccccccccCCCCCCCcccccccc
Q 022965 208 QQVECGICYAQFLPIDEELGAKSGGGTDYTCDNSSCSKA-FHSVCLGDWLRSITTTRQSYDVLFGNCPYCSEPVAVKIS 285 (289)
Q Consensus 208 ~~~eC~ICy~~~l~~d~~~~~~~g~~Pd~~C~n~~C~h~-FH~~CL~eWL~~l~~~r~sF~~i~g~CP~Cr~~i~~~~~ 285 (289)
....|.||++.+. +.+ ..+|||. |...|+..| ..||+||.++.-.+.
T Consensus 294 ~~~~C~IC~~~~~--------------~~v--~lpCgH~~fC~~C~~~~---------------~~CP~CR~~i~~~~~ 341 (345)
T 3t6p_A 294 EERTCKVCMDKEV--------------SVV--FIPCGHLVVCQECAPSL---------------RKCPICRGIIKGTVR 341 (345)
T ss_dssp TTCBCTTTSSSBC--------------CEE--EETTCCEEECTTTGGGC---------------SBCTTTCCBCCEEEE
T ss_pred CCCCCCccCCcCC--------------ceE--EcCCCChhHhHHHHhcC---------------CcCCCCCCCccCeEE
Confidence 4568999999864 112 2689999 999999866 489999999876553
No 72
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=96.49 E-value=0.00051 Score=51.57 Aligned_cols=45 Identities=20% Similarity=0.512 Sum_probs=34.0
Q ss_pred cccccccccccccchhhccccCCCCCcccccCCCCCCc-chhhHHHHHHhhhccCccccccccCCCCCCCccccccc
Q 022965 209 QVECGICYAQFLPIDEELGAKSGGGTDYTCDNSSCSKA-FHSVCLGDWLRSITTTRQSYDVLFGNCPYCSEPVAVKI 284 (289)
Q Consensus 209 ~~eC~ICy~~~l~~d~~~~~~~g~~Pd~~C~n~~C~h~-FH~~CL~eWL~~l~~~r~sF~~i~g~CP~Cr~~i~~~~ 284 (289)
...|.||++... +.+ ..+|||. |=..|+..| ..||+||+++.-.+
T Consensus 18 ~~~C~IC~~~~~--------------~~v--~~pCgH~~~C~~C~~~~---------------~~CP~Cr~~i~~~~ 63 (79)
T 2yho_A 18 AMLCMVCCEEEI--------------NST--FCPCGHTVCCESCAAQL---------------QSCPVCRSRVEHVQ 63 (79)
T ss_dssp HTBCTTTSSSBC--------------CEE--EETTCBCCBCHHHHTTC---------------SBCTTTCCBCCEEE
T ss_pred CCEeEEeCcccC--------------cEE--EECCCCHHHHHHHHHhc---------------CcCCCCCchhhCeE
Confidence 458999998753 112 2689999 889999653 39999999987654
No 73
>2a7l_A Hypothetical ubiquitin-conjugating enzyme LOC55284; structural genomics consortium, (SGC), ligase; 1.82A {Homo sapiens} SCOP: d.20.1.1
Probab=96.00 E-value=0.031 Score=46.21 Aligned_cols=83 Identities=11% Similarity=0.191 Sum_probs=61.3
Q ss_pred HHHHHHHHHhcccee--ee-----ecCCcceEEEEEEeCC-----CCEEEEEEEeCCCCCCCCCCccccCCCc---ccc-
Q 022965 17 RSVYSEIEEVGWEHL--VR-----LSEDLKFLSFRVIDKK-----GRVHCMEIQLDKNYPRSPPSISADVPYI---FNL- 80 (289)
Q Consensus 17 ~~l~~Ei~~igw~~l--~~-----id~~l~~i~l~~~D~~-----~R~H~l~i~l~~~yp~~~P~~~~dlP~~---f~l- 80 (289)
.+|.+|+.++.-+.. +. .+.++...++.+.-.. |....++|.+|.+||..||.+...=|.- .++
T Consensus 25 ~RL~kEl~~l~~~~~~gi~v~~~~~~~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~v~F~T~i~~~HPNV~ 104 (136)
T 2a7l_A 25 KRLQKELLALQNDPPPGMTLNEKSVQNSITQWIVDMEGAPGTLYEGEKFQLLFKFSSRYPFDSPQVMFTGENIPVHPHVY 104 (136)
T ss_dssp HHHHHHHHHHHHSCCTTCCCCTTCCCCSCEEEEEEEECCTTSTTTTCEEEEEEEECTTTTTSCCEEEEESSCCCCBTTBC
T ss_pred HHHHHHHHHHHhCCCCCEEEEEeeCccccceeEEEEECCCCCccccEEEEEEEECCCCCCCCCCEEEEeCCCcCCCccCC
Confidence 899999999965433 22 2457888888887443 4789999999999999999987654531 111
Q ss_pred ------------ccCccccHHHHHHHHHHHH
Q 022965 81 ------------KWSRKSRLKDLLQQFREHL 99 (289)
Q Consensus 81 ------------~w~~~s~L~~i~~qF~~~l 99 (289)
.|++..++..|+...+..|
T Consensus 105 ~~G~ICL~iL~~~WsP~~ti~~vL~sI~slL 135 (136)
T 2a7l_A 105 SNGHICLSILTEDWSPALSVQSVCLSIISML 135 (136)
T ss_dssp TTCBBCCGGGTTTCCTTSCHHHHHHHHHHHT
T ss_pred CCCeEEchhcCCCCCCCCcHHHHHHHHHHHh
Confidence 5999888888887766554
No 74
>2h2y_A Ubiquitin-conjugating enzyme; structural genomics, unknown function, structural genomics consortium, SGC; 2.80A {Plasmodium falciparum 3D7}
Probab=95.74 E-value=0.11 Score=42.72 Aligned_cols=86 Identities=12% Similarity=0.172 Sum_probs=63.4
Q ss_pred hHHHHHHHHHHHhcccee----ee-ecCCcceEEEEEEeCC-----CCEEEEEEEeCCCCCCCCCCccccCCCcc--cc-
Q 022965 14 SFSRSVYSEIEEVGWEHL----VR-LSEDLKFLSFRVIDKK-----GRVHCMEIQLDKNYPRSPPSISADVPYIF--NL- 80 (289)
Q Consensus 14 ~~y~~l~~Ei~~igw~~l----~~-id~~l~~i~l~~~D~~-----~R~H~l~i~l~~~yp~~~P~~~~dlP~~f--~l- 80 (289)
.--.+|.+|+.++.-+.. +. .+.++....+.+.-.. |....++|.+|.+||..||.+...=|..+ ++
T Consensus 20 ~~~~RL~kEl~~l~~~~~~~~~~~~~~~nl~~W~~~I~GP~~tpYegg~f~~~i~fp~~YP~~PP~v~f~t~i~~HPnv~ 99 (136)
T 2h2y_A 20 NANYRIQKELNNFLKNPPINCTIDVHPSNIRIWIVQYVGLENTIYANEVYKIKIIFPDNYPLKPPIVYFLQKPPKHTHVY 99 (136)
T ss_dssp SHHHHHHHHHHHHHHSCCTTEEEEECTTCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEECSSCCCCTTBC
T ss_pred HHHHHHHHHHHHHHhCCCCCeEEEeccccccccEEEEECCCCCceeCCEEEEEEEeCCCCCCCCCEEEEeCCCCCCCcCC
Confidence 346899999999865432 22 2457888888887433 57899999999999999999986654312 11
Q ss_pred ------------ccCccccHHHHHHHHHHHH
Q 022965 81 ------------KWSRKSRLKDLLQQFREHL 99 (289)
Q Consensus 81 ------------~w~~~s~L~~i~~qF~~~l 99 (289)
.|++..++..|+...+..|
T Consensus 100 ~~G~ICl~iL~~~WsP~~ti~~vL~si~sll 130 (136)
T 2h2y_A 100 SNGDICLSVLGDDYNPSLSISGLILSIISML 130 (136)
T ss_dssp TTCCBCCGGGTTTCCTTCCHHHHHHHHHHHH
T ss_pred CCCEEECccccCCCCCCCcHHHHHHHHHHHH
Confidence 5999888998888777665
No 75
>2fo3_A Ubiquitin-conjugating enzyme; SGC, UBC, structural genomics, structural genomics consortium, unknown function; 1.86A {Plasmodium vivax} SCOP: d.20.1.1
Probab=95.66 E-value=0.087 Score=42.52 Aligned_cols=85 Identities=11% Similarity=0.171 Sum_probs=62.2
Q ss_pred HHHHHHHHHHhcccee----ee-ecCCcceEEEEEEeCC-----CCEEEEEEEeCCCCCCCCCCccccCCCcc--cc---
Q 022965 16 SRSVYSEIEEVGWEHL----VR-LSEDLKFLSFRVIDKK-----GRVHCMEIQLDKNYPRSPPSISADVPYIF--NL--- 80 (289)
Q Consensus 16 y~~l~~Ei~~igw~~l----~~-id~~l~~i~l~~~D~~-----~R~H~l~i~l~~~yp~~~P~~~~dlP~~f--~l--- 80 (289)
..+|.+|+.++.-+.. +. .+.++...+..+.-.. |....++|.+|.+||..||.+...=|..+ ++
T Consensus 8 ~~RL~kEl~~l~~~~~~~~~~~~~~~~l~~w~~~i~GP~~tpYegg~f~~~i~fp~~YP~~PP~v~f~t~i~~HPnv~~~ 87 (125)
T 2fo3_A 8 NYRIQKELHNFLNNPPINCTLDVHPNNIRIWIVKYVGLENTIYANEVYKLKIIFPDDYPLKPPIVYFLQKPPKHTHVYSN 87 (125)
T ss_dssp -CHHHHHHHHHHHSCCTTEEEEECTTCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEECSSCCCBTTBCTT
T ss_pred HHHHHHHHHHHHhCCCCCEEEEeCcchhhhhheEEeCCCCCCcCCCEEEEEEEcCCCCCCCCCEEEEeCCCCCCCcCCCC
Confidence 3589999999854432 22 2457888888887433 57889999999999999999986654312 11
Q ss_pred ----------ccCccccHHHHHHHHHHHHH
Q 022965 81 ----------KWSRKSRLKDLLQQFREHLE 100 (289)
Q Consensus 81 ----------~w~~~s~L~~i~~qF~~~le 100 (289)
.|++..++..|+...+..|.
T Consensus 88 G~iCl~iL~~~W~P~~~i~~vl~si~~ll~ 117 (125)
T 2fo3_A 88 GDICLSLLGDDYNPSLSISGLVLSIISMLS 117 (125)
T ss_dssp SBBCCGGGTTTCCTTCCHHHHHHHHHHHHC
T ss_pred CEEEchhcCCCCCCCCcHHHHHHHHHHHHh
Confidence 69998889988887777664
No 76
>2ayv_A Ubiquitin-conjugating enzyme E2; structural genomics, structural genomics consortium, ubiquit ubiquitin-conjugating enzyme, SGC, ligase; 2.00A {Toxoplasma gondii} SCOP: d.20.1.1
Probab=95.50 E-value=0.12 Score=43.99 Aligned_cols=93 Identities=17% Similarity=0.365 Sum_probs=63.6
Q ss_pred cccCCCChhHHHHHHHHHHHhcccee-----eeecCCcceEEEEEEeC-----CCCEEEEEEEeCCCCCCCCCCccccCC
Q 022965 6 CRESANSSSFSRSVYSEIEEVGWEHL-----VRLSEDLKFLSFRVIDK-----KGRVHCMEIQLDKNYPRSPPSISADVP 75 (289)
Q Consensus 6 ~~~~~~~~~~y~~l~~Ei~~igw~~l-----~~id~~l~~i~l~~~D~-----~~R~H~l~i~l~~~yp~~~P~~~~dlP 75 (289)
.|+....+.--.+|.+|+.++.-+.. .-.+.++....+.+.-. .|....++|.+|.+||..||.+...=|
T Consensus 13 ~~~~~~~~~~~~RL~kEl~~l~~~~~~gi~~~~~~~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~V~F~T~ 92 (166)
T 2ayv_A 13 GRENLYFQGALKRINKELNDLSKDPPTNCSAGPVGDDMFHWQATIMGPEDSPYSGGVFFLNIHFPSDYPFKPPKVNFTTK 92 (166)
T ss_dssp ------CTTHHHHHHHHHHHHHHSCCTTEEEEECSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEECSC
T ss_pred ccccccCcHHHHHHHHHHHHHHhCCCCCEEEEEcCCCcceeeEEEECCCCCCcCCCEEEEEEeCCCcCCCCCceeeeccC
Confidence 34444455567899999999854422 22345788888888843 367899999999999999998875444
Q ss_pred Cccc-------------c--ccCccccHHHHHHHHHHHH
Q 022965 76 YIFN-------------L--KWSRKSRLKDLLQQFREHL 99 (289)
Q Consensus 76 ~~f~-------------l--~w~~~s~L~~i~~qF~~~l 99 (289)
+ |. | .|++..+|..|+...+..|
T Consensus 93 i-~HPNI~~~G~ICL~iL~~~WsP~~ti~~vL~sI~sll 130 (166)
T 2ayv_A 93 I-YHPNINSQGAICLDILKDQWSPALTISKVLLSISSLL 130 (166)
T ss_dssp C-CBTTBCTTCBBCCGGGTTTCCTTCCHHHHHHHHHHHH
T ss_pred C-cCCcCCCCCeEEcccccccCCCCCcHHHHHHHHHHHH
Confidence 2 11 1 6999888888877666555
No 77
>2aak_A UBC1, ubiquitin conjugating enzyme; ubiquitin conjugation, ligase; 2.40A {Arabidopsis thaliana} SCOP: d.20.1.1 PDB: 1jas_A 2y4w_A 2yb6_A 2ybf_A 1q34_A 1z3d_A
Probab=95.31 E-value=0.11 Score=43.28 Aligned_cols=83 Identities=13% Similarity=0.351 Sum_probs=59.7
Q ss_pred HHHHHHHHHHhcccee-----eeecCCcceEEEEEEeC-----CCCEEEEEEEeCCCCCCCCCCccccCCCccc------
Q 022965 16 SRSVYSEIEEVGWEHL-----VRLSEDLKFLSFRVIDK-----KGRVHCMEIQLDKNYPRSPPSISADVPYIFN------ 79 (289)
Q Consensus 16 y~~l~~Ei~~igw~~l-----~~id~~l~~i~l~~~D~-----~~R~H~l~i~l~~~yp~~~P~~~~dlP~~f~------ 79 (289)
-.+|.+|+.++.-+.. .-.+.++......+.-. .|....++|.+|.+||..||.+...=|. |+
T Consensus 6 ~~RL~~E~~~l~~~~~~~i~~~~~~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i-~HPnv~~~ 84 (152)
T 2aak_A 6 RKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLSLQFSEDYPNKPPTVRFVSRM-FHPNIYAD 84 (152)
T ss_dssp HHHHHHHHHHHHHSCCTTEEEEEETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCC-CCTTBCTT
T ss_pred HHHHHHHHHHHHhCCCCCEEEEeCCCCccEEEEEEeCCCCCCccCCEEEEEEECCCCCCCCCCEEEEecCc-ccCCCCCC
Confidence 4789999999854432 22355688888888753 4678999999999999999998754332 11
Q ss_pred ---------cccCccccHHHHHHHHHHHH
Q 022965 80 ---------LKWSRKSRLKDLLQQFREHL 99 (289)
Q Consensus 80 ---------l~w~~~s~L~~i~~qF~~~l 99 (289)
-.|++..+|..|+...+..|
T Consensus 85 G~iCl~iL~~~W~p~~~i~~vl~~i~~ll 113 (152)
T 2aak_A 85 GSICLDILQNQWSPIYDVAAILTSIQSLL 113 (152)
T ss_dssp SBBCCGGGTTSCCTTCCHHHHHHHHHHHH
T ss_pred CEEechhhcCCCCCCCcHHHHHHHHHHHH
Confidence 16999888887776655544
No 78
>1zdn_A Ubiquitin-conjugating enzyme E2S; structural genomics consortium, ubiquitin-conjuga enzyme, ligase, SGC; 1.93A {Homo sapiens} SCOP: d.20.1.1
Probab=95.21 E-value=0.17 Score=42.44 Aligned_cols=87 Identities=24% Similarity=0.371 Sum_probs=63.7
Q ss_pred ChhHHHHHHHHHHHhcccee----ee-ecCCcceEEEEEEeCC-----CCEEEEEEEeCCCCCCCCCCccccCCCccc--
Q 022965 12 SSSFSRSVYSEIEEVGWEHL----VR-LSEDLKFLSFRVIDKK-----GRVHCMEIQLDKNYPRSPPSISADVPYIFN-- 79 (289)
Q Consensus 12 ~~~~y~~l~~Ei~~igw~~l----~~-id~~l~~i~l~~~D~~-----~R~H~l~i~l~~~yp~~~P~~~~dlP~~f~-- 79 (289)
++..-.+|.+|+.+|.-+.. +. .+.++...+..+.-.. |....++|.+|.+||..||.+...-|. |+
T Consensus 11 s~~~~~RL~kEl~~l~~~~~~gi~~~~~~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i-~HPn 89 (158)
T 1zdn_A 11 PPHIIRLVYKEVTTLTADPPDGIKVFPNEEDLTDLQVTIEGPEGTPYAGGLFRMKLLLGKDFPASPPKGYFLTKI-FHPN 89 (158)
T ss_dssp CHHHHHHHHHHHHHHHHSCCTTEEEEECSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCC-CCTT
T ss_pred CHHHHHHHHHHHHHHHhCCCCCEEEEECCCChhheeEEEECCCCCCccCcEEEEEEEcCCCCCCCCCEEEeccCc-ccCC
Confidence 55678899999999865432 22 3457888888887433 478899999999999999998765553 21
Q ss_pred -------------cccCccccHHHHHHHHHHHH
Q 022965 80 -------------LKWSRKSRLKDLLQQFREHL 99 (289)
Q Consensus 80 -------------l~w~~~s~L~~i~~qF~~~l 99 (289)
-.|++..++..|+...+..|
T Consensus 90 v~~~G~iCl~iL~~~W~p~~~i~~vL~~i~~ll 122 (158)
T 1zdn_A 90 VGANGEICVNVLKRDWTAELGIRHVLLTIKCLL 122 (158)
T ss_dssp BCTTSBBCHHHHTTTCCTTCCHHHHHHHHHHHH
T ss_pred CCCCCEEehhhcCCCCCCCCcHHHHHHHHHHHH
Confidence 16999888887776655554
No 79
>3rcz_B SUMO-conjugating enzyme UBC9; SUMO-like domain, protein:protein interaction, protein ligase complex; HET: DNA; 1.90A {Schizosaccharomyces pombe} SCOP: d.20.1.1
Probab=95.08 E-value=0.12 Score=43.84 Aligned_cols=86 Identities=21% Similarity=0.359 Sum_probs=61.4
Q ss_pred hhHHHHHHHHHHHhccceee-----eecC-----CcceEEEEEEeCC-----CCEEEEEEEeCCCCCCCCCCccccCCCc
Q 022965 13 SSFSRSVYSEIEEVGWEHLV-----RLSE-----DLKFLSFRVIDKK-----GRVHCMEIQLDKNYPRSPPSISADVPYI 77 (289)
Q Consensus 13 ~~~y~~l~~Ei~~igw~~l~-----~id~-----~l~~i~l~~~D~~-----~R~H~l~i~l~~~yp~~~P~~~~dlP~~ 77 (289)
.+=-.+|.+|+.++.-+... -.+. ++......+.-.. |....++|.+|.+||..||.+...-|.
T Consensus 9 ~~~~~RL~kEl~~l~~~~p~gi~~~p~~~~d~~~nl~~W~~~I~Gp~~Tpyegg~f~l~i~fp~~YP~~pP~v~F~t~i- 87 (163)
T 3rcz_B 9 SLCKTRLQEERKQWRRDHPFGFYAKPCKSSDGGLDLMNWKVGIPGKPKTSWEGGLYKLTMAFPEEYPTRPPKCRFTPPL- 87 (163)
T ss_dssp CHHHHHHHHHHHHHHHSCCTTCEEEEEECTTSSEEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCC-
T ss_pred HHHHHHHHHHHHHHHhCCCCCEEEEEccCcCCCCCccEEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCCEEEEeCCC-
Confidence 44568999999999766431 1222 6777888887444 588999999999999999998654332
Q ss_pred cc-------------c----ccCccccHHHHHHHHHHHH
Q 022965 78 FN-------------L----KWSRKSRLKDLLQQFREHL 99 (289)
Q Consensus 78 f~-------------l----~w~~~s~L~~i~~qF~~~l 99 (289)
|. | .|++..++..|+...+..|
T Consensus 88 ~HPnV~~~G~iCl~iL~~~~~W~p~~ti~~vL~~i~~ll 126 (163)
T 3rcz_B 88 FHPNVYPSGTVCLSILNEEEGWKPAITIKQILLGIQDLL 126 (163)
T ss_dssp CSTTBCTTSBBCCGGGCTTTTCCTTCCHHHHHHHHHHHH
T ss_pred ccCCCCCCCcEeccccCCCCCcCCcCcHHHHHHHHHHHH
Confidence 11 1 3999888888776655554
No 80
>1zuo_A Hypothetical protein LOC92912; ligase, ubiquitin-conjugating enzyme, structural genomics consortium ,SGC; 1.80A {Homo sapiens} SCOP: d.20.1.1 PDB: 2qgx_A
Probab=95.06 E-value=0.14 Score=44.25 Aligned_cols=89 Identities=16% Similarity=0.301 Sum_probs=63.3
Q ss_pred ChhHHHHHHHHHHHhccce--------eeeecCCcceEEEEEEe--CCC---------------CEEEEEEEeCCCCCCC
Q 022965 12 SSSFSRSVYSEIEEVGWEH--------LVRLSEDLKFLSFRVID--KKG---------------RVHCMEIQLDKNYPRS 66 (289)
Q Consensus 12 ~~~~y~~l~~Ei~~igw~~--------l~~id~~l~~i~l~~~D--~~~---------------R~H~l~i~l~~~yp~~ 66 (289)
+..--.+|.+|+.+|.-+. +.-.+.++....+.+.- ... ....++|.+|.+||..
T Consensus 25 s~~a~~RL~kEl~~l~~~~~~~~~~~~~~p~~dnl~~W~~~I~Gp~~~tpy~ggl~~~~~~~g~g~f~l~i~fp~~YP~~ 104 (186)
T 1zuo_A 25 SVQASDRLMKELRDIYRSQSYKTGIYSVELINDSLYDWHVKLQKVDPDSPLHSDLQILKEKEGIEYILLNFSFKDNFPFD 104 (186)
T ss_dssp CHHHHHHHHHHHHHHHTSHHHHTTSEEEEEETTEEEEEEEEECCCCTTSHHHHHHHHHHHHHSCCSEEEEEECCTTTTSS
T ss_pred cHHHHHHHHHHHHHHHhCCCCCCCcEEEEEcCCccceeEEEEECCCCCCCccccchhhccccCceEEEEEEECCCCCCCC
Confidence 3455789999999986543 22245678888888873 221 6788999999999999
Q ss_pred CCCccccCCCc-------------ccc---ccCccccHHHHHHHHHHHHH
Q 022965 67 PPSISADVPYI-------------FNL---KWSRKSRLKDLLQQFREHLE 100 (289)
Q Consensus 67 ~P~~~~dlP~~-------------f~l---~w~~~s~L~~i~~qF~~~le 100 (289)
||.+..-=|.- -.| .|+|..++..|+...+..|.
T Consensus 105 PP~V~f~tpi~hPnnV~~~G~ICL~iL~~~~WsP~~ti~~VL~sI~slL~ 154 (186)
T 1zuo_A 105 PPFVRVVLPVLSGGYVLGGGALCMELLTKQGWSSAYSIESVIMQINATLV 154 (186)
T ss_dssp CCEEEEEESCEESTTBCGGGBBCCGGGSTTTCCTTSCHHHHHHHHHHHHH
T ss_pred CCeEEEeCCccCCCccCCCCcEEeccCCCCCCCCcCcHHHHHHHHHHHHc
Confidence 99886543421 012 59998899988887777663
No 81
>1jat_A Ubiquitin-conjugating enzyme E2-17.5 kDa; UEV, ligase; 1.60A {Saccharomyces cerevisiae} SCOP: d.20.1.1 PDB: 1jbb_A 2gmi_A 3hct_B 3hcu_B 4dhi_D 1j7d_B 4dhj_C 4dhz_F
Probab=94.97 E-value=0.13 Score=43.01 Aligned_cols=82 Identities=15% Similarity=0.372 Sum_probs=59.0
Q ss_pred HHHHHHHHHhcccee-----eeecCCcceEEEEEEeC-----CCCEEEEEEEeCCCCCCCCCCccccCCCcc--------
Q 022965 17 RSVYSEIEEVGWEHL-----VRLSEDLKFLSFRVIDK-----KGRVHCMEIQLDKNYPRSPPSISADVPYIF-------- 78 (289)
Q Consensus 17 ~~l~~Ei~~igw~~l-----~~id~~l~~i~l~~~D~-----~~R~H~l~i~l~~~yp~~~P~~~~dlP~~f-------- 78 (289)
.+|.+|+.+|.-+.. .-.+.++...++.+.-. .|....++|.+|.+||..||.+...=|. |
T Consensus 8 ~RL~kE~~~l~~~~~~~i~~~~~~~~l~~w~~~I~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i-~HPnv~~~G 86 (155)
T 1jat_A 8 KRIIKETEKLVSDPVPGITAEPHDDNLRYFQVTIEGPEQSPYEDGIFELELYLPDDYPMEAPKVRFLTKI-YHPNIDRLG 86 (155)
T ss_dssp HHHHHHHHHHHHSCCTTEEEEEETTEEEEEEEEEECCTTSTTTTEEEEEEEECCTTTTTSCCEEEECSCC-CBTTBCTTC
T ss_pred HHHHHHHHHHHhCCCCCEEEEECCCchhEEEEEEECCCCCCccCcEEEEEEEcCCCCCCCCCcceeeccc-ccCCCCCCC
Confidence 689999999854422 22345688888888743 3578899999999999999998654332 1
Q ss_pred -------ccccCccccHHHHHHHHHHHH
Q 022965 79 -------NLKWSRKSRLKDLLQQFREHL 99 (289)
Q Consensus 79 -------~l~w~~~s~L~~i~~qF~~~l 99 (289)
.=.|++..++..|+...+..|
T Consensus 87 ~iCl~iL~~~W~p~~~i~~vl~~i~~ll 114 (155)
T 1jat_A 87 RICLDVLKTNWSPALQIRTVLLSIQALL 114 (155)
T ss_dssp CBCCGGGTTTCCTTCCHHHHHHHHHHHH
T ss_pred EEEchhhccCCCCCCCHHHHHHHHHHHH
Confidence 116999888888877665554
No 82
>4gpr_A Ubiquitin-conjugating enzyme family protein; ubiquitin conjugation, EHU ehring1, thiol esterification, ligase; 1.60A {Entamoeba histolytica}
Probab=94.96 E-value=0.12 Score=42.93 Aligned_cols=83 Identities=16% Similarity=0.338 Sum_probs=61.4
Q ss_pred HHHHHHHHHHhcccee-----eeecCCcceEEEEEEeC-----CCCEEEEEEEeCCCCCCCCCCccccCCCccc------
Q 022965 16 SRSVYSEIEEVGWEHL-----VRLSEDLKFLSFRVIDK-----KGRVHCMEIQLDKNYPRSPPSISADVPYIFN------ 79 (289)
Q Consensus 16 y~~l~~Ei~~igw~~l-----~~id~~l~~i~l~~~D~-----~~R~H~l~i~l~~~yp~~~P~~~~dlP~~f~------ 79 (289)
.++|.+|+.++.-+.. .-.+.++....+.+... .|....++|.+|.+||..||.+...=|+ |+
T Consensus 6 ~~RL~kEl~~l~~~~~~~i~~~p~~~nl~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i-~HPnv~~~ 84 (151)
T 4gpr_A 6 MRRIQKELREIQQDPPCNCSAGPVGDDIFHWTATITGPDDSPYQGGLFFLDVHFPVDYPFKAPRVTFMTKV-YHPNINKN 84 (151)
T ss_dssp HHHHHHHHHHHHHSCCTTEEEEESSSCTTEEEEEEECCSSSTTTTCEEEEEEECCTTTTSSCCEEEESSCC-CBTTBCTT
T ss_pred HHHHHHHHHHHHhCCCCCEEEEEcCCCceEEEEEEeCCCCCCcCCCEEEEEEECCCCCCCCcceeEEecCc-ccceECCC
Confidence 5799999999965432 22356788899998843 3578899999999999999998654442 11
Q ss_pred ---------cccCccccHHHHHHHHHHHH
Q 022965 80 ---------LKWSRKSRLKDLLQQFREHL 99 (289)
Q Consensus 80 ---------l~w~~~s~L~~i~~qF~~~l 99 (289)
-.|++..++..|+...+..|
T Consensus 85 G~iCl~iL~~~W~p~~~i~~vl~~i~~ll 113 (151)
T 4gpr_A 85 GVICLDILKDQWSPALTLSRVLLSISSLL 113 (151)
T ss_dssp CBBCCGGGTTTCCTTCCHHHHHHHHHHHH
T ss_pred CEEEcccccCCCCCCCcHHHHHHHHHHHh
Confidence 26999888888877666555
No 83
>2bep_A Ubiquitin-conjugating enzyme E2-25 kDa; ligase, E2 conjugating enzyme, protein degradatio structural proteomics in europe, spine; 1.8A {Bos taurus} SCOP: d.20.1.1 PDB: 2bf8_A
Probab=94.93 E-value=0.19 Score=42.11 Aligned_cols=84 Identities=21% Similarity=0.341 Sum_probs=59.8
Q ss_pred HHHHHHHHHHhccc-----ee---eeecCCcceEEEEEEeC-----CCCEEEEEEEeCCCCCCCCCCccccCCC----c-
Q 022965 16 SRSVYSEIEEVGWE-----HL---VRLSEDLKFLSFRVIDK-----KGRVHCMEIQLDKNYPRSPPSISADVPY----I- 77 (289)
Q Consensus 16 y~~l~~Ei~~igw~-----~l---~~id~~l~~i~l~~~D~-----~~R~H~l~i~l~~~yp~~~P~~~~dlP~----~- 77 (289)
-.+|.+|+.+|.-+ .. .-.+.++...++.+.-. .|....++|.+|.+||..||.+...=|+ .
T Consensus 10 ~~RL~kEl~~l~~~~~~~~~~i~~~~~~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPni~ 89 (159)
T 2bep_A 10 VQRIKREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIWHPNIS 89 (159)
T ss_dssp HHHHHHHHHHHHHCHHHHTTSEEEEECSSSSSEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCBTTBC
T ss_pred HHHHHHHHHHHHhcCCCCCCCEEEEeCCCchheEEEEEECCCCCCccCCEEEEEEeCCCcCCCCCCEEEeeCCCCccCCC
Confidence 47899999998542 11 22355788999888742 3578889999999999999998754432 0
Q ss_pred -----ccc-----ccCccccHHHHHHHHHHHH
Q 022965 78 -----FNL-----KWSRKSRLKDLLQQFREHL 99 (289)
Q Consensus 78 -----f~l-----~w~~~s~L~~i~~qF~~~l 99 (289)
+.+ .|++..++..|+...+..|
T Consensus 90 ~~~G~iCl~iL~~~W~p~~~i~~vl~~i~~ll 121 (159)
T 2bep_A 90 SVTGAICLDILKDQWAAAMTLRTVLLSLQALL 121 (159)
T ss_dssp TTTCBBCCGGGTTTCCTTCCHHHHHHHHHHHH
T ss_pred CCCCEEeChhhhccCCCCCcHHHHHHHHHHHH
Confidence 001 4999888888877666655
No 84
>2r0j_A Ubiquitin carrier protein; ubiquitin conjugating, malaria, ligas conjugation pathway, structural genomics, structural genomi consortium; 1.85A {Plasmodium falciparum} PDB: 3e95_A
Probab=94.88 E-value=0.18 Score=41.74 Aligned_cols=82 Identities=21% Similarity=0.398 Sum_probs=59.5
Q ss_pred HHHHHHHHHhcccee-----eeecCCcceEEEEEEeC-----CCCEEEEEEEeCCCCCCCCCCccccCCCccc-------
Q 022965 17 RSVYSEIEEVGWEHL-----VRLSEDLKFLSFRVIDK-----KGRVHCMEIQLDKNYPRSPPSISADVPYIFN------- 79 (289)
Q Consensus 17 ~~l~~Ei~~igw~~l-----~~id~~l~~i~l~~~D~-----~~R~H~l~i~l~~~yp~~~P~~~~dlP~~f~------- 79 (289)
.+|.+|+.++.-+.. .-.+.++...++.+.-. .|....++|.+|.+||..||.+...=|. |+
T Consensus 4 ~RL~kEl~~l~~~~~~~i~~~~~~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i-~HPnv~~~G 82 (149)
T 2r0j_A 4 RRITKETQNLANEPPPGIMAVPVPENYRHFNILINGPDGTPYEGGTYKLELFLPEQYPMEPPKVRFLTKI-YHPNIDKLG 82 (149)
T ss_dssp HHHHHHHHHHHHSCCTTEEEEEETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEECSCC-CBTTBCTTC
T ss_pred HHHHHHHHHHHhCCCCCEEEEECCCcccEEEEEEECCCCCCcCCCEEEEEEeCCcccCCCCCeeEeccCC-ccCCCCCCC
Confidence 589999999854422 22345688888888743 2578999999999999999998765442 11
Q ss_pred --------cccCccccHHHHHHHHHHHH
Q 022965 80 --------LKWSRKSRLKDLLQQFREHL 99 (289)
Q Consensus 80 --------l~w~~~s~L~~i~~qF~~~l 99 (289)
-.|++..++..|+...+..|
T Consensus 83 ~iCl~iL~~~W~p~~~i~~vl~~i~~ll 110 (149)
T 2r0j_A 83 RICLDILKDKWSPALQIRTVLLSIQALL 110 (149)
T ss_dssp BBCCGGGTTTCCTTSCHHHHHHHHHHHH
T ss_pred EEechhcCCCCCCCCcHHHHHHHHHHHH
Confidence 16999888888877666554
No 85
>2c2v_B Ubiquitin-conjugating enzyme E2 N; chaperone, heat-shock protein complex, E3 ligase, ubiquitiny TPR, heat-shock protein; 2.9A {Homo sapiens} SCOP: d.20.1.1
Probab=94.86 E-value=0.16 Score=42.43 Aligned_cols=82 Identities=17% Similarity=0.342 Sum_probs=59.6
Q ss_pred HHHHHHHHHhcccee-----eeecCCcceEEEEEEeC-----CCCEEEEEEEeCCCCCCCCCCccccCCCccc-------
Q 022965 17 RSVYSEIEEVGWEHL-----VRLSEDLKFLSFRVIDK-----KGRVHCMEIQLDKNYPRSPPSISADVPYIFN------- 79 (289)
Q Consensus 17 ~~l~~Ei~~igw~~l-----~~id~~l~~i~l~~~D~-----~~R~H~l~i~l~~~yp~~~P~~~~dlP~~f~------- 79 (289)
.+|.+|+.++.-+.. .-.+.++...+..+.-. .|....++|.+|.+||..||.+...=|+ |+
T Consensus 8 ~RL~kEl~~l~~~~~~~i~~~~~~~~l~~w~~~i~GP~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i-~HPnv~~~G 86 (154)
T 2c2v_B 8 RRIIKETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTKI-YHPNVDKLG 86 (154)
T ss_dssp HHHHHHHHHHHHSCCTTEEEEECSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEECSCC-CCTTBCTTC
T ss_pred HHHHHHHHHHHhCCCCCEEEEECCCchheEEEEEECCCCCCcCCCeEEEEEEcCCCCCCCCCEEEeecCc-ccCcCccCC
Confidence 689999999865432 22345788888888743 2578899999999999999998765442 11
Q ss_pred --------cccCccccHHHHHHHHHHHH
Q 022965 80 --------LKWSRKSRLKDLLQQFREHL 99 (289)
Q Consensus 80 --------l~w~~~s~L~~i~~qF~~~l 99 (289)
-.|++..+|..|+...+..|
T Consensus 87 ~iCl~iL~~~W~p~~~i~~vl~~i~~ll 114 (154)
T 2c2v_B 87 RICLDILKDKWSPALQIRTVLLSIQALL 114 (154)
T ss_dssp BBCCHHHHTSCCTTCCHHHHHHHHHHHT
T ss_pred eEEchhccCCCCCCCcHHHHHHHHHHHH
Confidence 16999888888776555544
No 86
>3h8k_A Ubiquitin-conjugating enzyme E2 G2; alpha beta, all alpha, ligase, UBL conjugation pathway, endo reticulum, membrane, metal-binding; 1.80A {Homo sapiens} SCOP: d.20.1.1 PDB: 3fsh_A 2cyx_A 2kly_A
Probab=94.79 E-value=0.19 Score=42.23 Aligned_cols=84 Identities=14% Similarity=0.260 Sum_probs=60.4
Q ss_pred HHHHHHHHHHhcccee--e---eecC-CcceEEEEEEeC-----CCCEEEEEEEeCCCCCCCCCCccccCCC--------
Q 022965 16 SRSVYSEIEEVGWEHL--V---RLSE-DLKFLSFRVIDK-----KGRVHCMEIQLDKNYPRSPPSISADVPY-------- 76 (289)
Q Consensus 16 y~~l~~Ei~~igw~~l--~---~id~-~l~~i~l~~~D~-----~~R~H~l~i~l~~~yp~~~P~~~~dlP~-------- 76 (289)
.++|.+|+.++.-+.. + -.+. ++....+.+.-. .|....++|.+|.+||..||.+...=|.
T Consensus 5 ~~RL~kEl~~l~~~~~~gi~~~~~~~~nl~~w~~~I~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPNV~~~ 84 (164)
T 3h8k_A 5 LKRLMAEYKQLTLNPPEGIVAGPMNEENFFEWEALIMGPEDTCFEFGVFPAILSFPLDYPLSPPKMRFTCEMFHPNIYPD 84 (164)
T ss_dssp HHHHHHHHHHHHHSCCTTEEEEESSTTCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEECSCCCCTTBCTT
T ss_pred HHHHHHHHHHHHhCCCCCEEEEECCCCCccEEEEEEeCCCCCCCCCCEEEEEEECCCCCCCCCCEEEEcCCCccCCCCCC
Confidence 5789999999865432 2 2344 788999988843 3578889999999999999998644331
Q ss_pred -------cc------------ccccCccccHHHHHHHHHHHH
Q 022965 77 -------IF------------NLKWSRKSRLKDLLQQFREHL 99 (289)
Q Consensus 77 -------~f------------~l~w~~~s~L~~i~~qF~~~l 99 (289)
.. .=.|++..++..|+...+..|
T Consensus 85 G~iCl~iL~~~~~~~~~~~~~~~~W~p~~ti~~vL~~i~~ll 126 (164)
T 3h8k_A 85 GRVCISILHAPGDDPMGYESSAERWSPVQSVEKILLSVVSML 126 (164)
T ss_dssp SBBCCGGGSCSCSCCCSCCTTCCCCCTTCCHHHHHHHHHHHH
T ss_pred CcEeeecccCcccccccccccccCCCCCCcHHHHHHHHHHHH
Confidence 11 025999888888877666555
No 87
>2c4o_A Ubiquitin-conjugating enzyme E2 D2; thioesterification, ligase, UBL conjugation pathway; HET: CME; 1.94A {Homo sapiens} SCOP: d.20.1.1 PDB: 2clw_A* 2c4p_A
Probab=94.69 E-value=0.26 Score=41.65 Aligned_cols=87 Identities=17% Similarity=0.338 Sum_probs=62.8
Q ss_pred hhHHHHHHHHHHHhcccee-----eeecCCcceEEEEEEeCC-----CCEEEEEEEeCCCCCCCCCCccccCCC--c---
Q 022965 13 SSFSRSVYSEIEEVGWEHL-----VRLSEDLKFLSFRVIDKK-----GRVHCMEIQLDKNYPRSPPSISADVPY--I--- 77 (289)
Q Consensus 13 ~~~y~~l~~Ei~~igw~~l-----~~id~~l~~i~l~~~D~~-----~R~H~l~i~l~~~yp~~~P~~~~dlP~--~--- 77 (289)
+.--.+|.+|+.++.-+.. .-.+.++....+.+.-.. |....++|.+|.+||..||.+...-|+ +
T Consensus 18 ~~~~~RL~kEl~~l~~~~~~gi~~~p~~~nl~~W~~~I~GP~~TpYegg~f~l~i~fp~~YP~~PP~v~F~T~i~HPnV~ 97 (165)
T 2c4o_A 18 SMALKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNIN 97 (165)
T ss_dssp HHHHHHHHHHHHHHHSSCCTTEEEEESSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEECSCCCBTTBC
T ss_pred cHHHHHHHHHHHHHHhCCCCCEEEEEcCCCcceeEEEEECCCCCCccCceEEEEEECCCcCCCCCCEEEEecCCcCCcCC
Confidence 4456899999999965432 223567888888887432 578899999999999999998765442 0
Q ss_pred ----c---cc--ccCccccHHHHHHHHHHHH
Q 022965 78 ----F---NL--KWSRKSRLKDLLQQFREHL 99 (289)
Q Consensus 78 ----f---~l--~w~~~s~L~~i~~qF~~~l 99 (289)
+ .| .|++..+|..|+...+..|
T Consensus 98 ~~G~ICl~iL~~~W~P~~ti~~vL~si~~ll 128 (165)
T 2c4o_A 98 SNGSICLDILRSQWSPALTISKVLLSICSLL 128 (165)
T ss_dssp TTCBBCCGGGTTTCCTTCCHHHHHHHHHHHH
T ss_pred CCCeEeehhhcCCCCCcCcHHHHHHHHHHHH
Confidence 0 11 6999888888877666555
No 88
>4ds2_A Ubiquitin-conjugating enzyme E2, putative; structural genomics, PSI, protein structure initiative; 2.63A {Trypanosoma cruzi}
Probab=94.63 E-value=0.19 Score=42.47 Aligned_cols=83 Identities=12% Similarity=0.332 Sum_probs=59.9
Q ss_pred HHHHHHHHHHhccce----------------eee-ecCCcceEEEEEEeCC-------CCEEEEEEEeCCCCCCCCCCcc
Q 022965 16 SRSVYSEIEEVGWEH----------------LVR-LSEDLKFLSFRVIDKK-------GRVHCMEIQLDKNYPRSPPSIS 71 (289)
Q Consensus 16 y~~l~~Ei~~igw~~----------------l~~-id~~l~~i~l~~~D~~-------~R~H~l~i~l~~~yp~~~P~~~ 71 (289)
-++|.+|+.+|.-+. .+. .+.++....+.+.-.. |....++|.+|.+||..||.+.
T Consensus 10 ~kRL~kEl~~l~~~~~~~~~~~~~~~~~~~i~~~~~~~nl~~w~~~i~Gp~~tpye~~gg~f~~~i~fp~~YP~~pP~v~ 89 (167)
T 4ds2_A 10 NKRIIKDLKLLLEEVDANNEANSSGSPHSTAIFSVDTDTIYNWILKVKAPADSVYGGAGNTYQLSVLFSDDYPHEPPTVR 89 (167)
T ss_dssp CHHHHHHHHHHHHHHHHHTTC----CCSSCEEEEEEESSTTEEEEEEECCTTSGGGTTCCEEEEEEECCTTTTTSCCEEE
T ss_pred HHHHHHHHHHHHhCcccccccccccCCCCcEEEEeCCCcccEEEEEEECCCCCCccCCCCEEEEEEECCCCCCCCCCEEE
Confidence 468889988886544 122 3567889999988432 7889999999999999999987
Q ss_pred ccCCCccc---------------cccCccccHHHHHHHHHHHH
Q 022965 72 ADVPYIFN---------------LKWSRKSRLKDLLQQFREHL 99 (289)
Q Consensus 72 ~dlP~~f~---------------l~w~~~s~L~~i~~qF~~~l 99 (289)
..-|. |+ -.|++..++..++-+....|
T Consensus 90 f~t~i-~HPnv~~~G~iCl~il~~~W~p~~~i~~vll~~l~~l 131 (167)
T 4ds2_A 90 FVTPV-YSPLVTGEGGICDRMVNDFWTPDQHASDVIKLVLDRV 131 (167)
T ss_dssp ESSCC-CCSSCCTTSCCCTHHHHTTCCTTSCHHHHHHHHHHHH
T ss_pred EeCCc-ccccCCCCCEEEcccCcCCCCCCCChHHHHHHHHHHH
Confidence 66553 22 15998888887665544443
No 89
>1z2u_A Ubiquitin-conjugating enzyme E2 2; PSI, secsg, proteosome pathway, structural genomics, protein structure initiative; 1.10A {Caenorhabditis elegans} SCOP: d.20.1.1 PDB: 3tgd_A 2esk_A 1ur6_A 1w4u_A 4a49_B* 4a4b_C* 4a4c_C* 3eb6_B 3l1y_A 2esp_A 2eso_A 2esq_A 3l1z_A 2oxq_A 3a33_A 4ddg_D 4ddi_D 1x23_A 3rpg_A 2fuh_A ...
Probab=94.61 E-value=0.23 Score=41.08 Aligned_cols=84 Identities=18% Similarity=0.385 Sum_probs=59.9
Q ss_pred HHHHHHHHHHhcccee-----eeecCCcceEEEEEEeC-----CCCEEEEEEEeCCCCCCCCCCccccCCC--c------
Q 022965 16 SRSVYSEIEEVGWEHL-----VRLSEDLKFLSFRVIDK-----KGRVHCMEIQLDKNYPRSPPSISADVPY--I------ 77 (289)
Q Consensus 16 y~~l~~Ei~~igw~~l-----~~id~~l~~i~l~~~D~-----~~R~H~l~i~l~~~yp~~~P~~~~dlP~--~------ 77 (289)
-.+|.+|+.++.-+.. .-.+.++....+.+.-. .|....++|.+|.+||..||.+...-|+ +
T Consensus 6 ~~RL~kEl~~l~~~~~~~~~~~~~~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnv~~~G 85 (150)
T 1z2u_A 6 LKRIQKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPESPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNG 85 (150)
T ss_dssp HHHHHHHHHHHHHSCCSSEEEEEETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCBTTBCTTC
T ss_pred HHHHHHHHHHHHhCCCCCEEEEECCCcceEEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCcEEEEecCcccCcCCCCC
Confidence 4789999999854422 22345688888888732 3578899999999999999998765442 0
Q ss_pred ------cccccCccccHHHHHHHHHHHH
Q 022965 78 ------FNLKWSRKSRLKDLLQQFREHL 99 (289)
Q Consensus 78 ------f~l~w~~~s~L~~i~~qF~~~l 99 (289)
+.-.|++..++..|+...+..|
T Consensus 86 ~iCl~iL~~~W~p~~~i~~vl~~i~~ll 113 (150)
T 1z2u_A 86 SICLDILRSQWSPALTISKVLLSICSLL 113 (150)
T ss_dssp BBCCGGGTTTCCTTCCHHHHHHHHHHHH
T ss_pred eEeeccccCCCCCCCCHHHHHHHHHHHh
Confidence 0116999888888877666555
No 90
>2awf_A Ubiquitin-conjugating enzyme E2 G1; ligase, UBL conjugation pathway, structural genomics, structural genomics consortium SGC; 2.10A {Homo sapiens} SCOP: d.20.1.1 PDB: 1pzv_A
Probab=94.61 E-value=0.27 Score=41.90 Aligned_cols=91 Identities=18% Similarity=0.269 Sum_probs=64.4
Q ss_pred CCCChhHHHHHHHHHHHhcccee--ee---ec-CCcceEEEEEEeCC-----CCEEEEEEEeCCCCCCCCCCccccCCC-
Q 022965 9 SANSSSFSRSVYSEIEEVGWEHL--VR---LS-EDLKFLSFRVIDKK-----GRVHCMEIQLDKNYPRSPPSISADVPY- 76 (289)
Q Consensus 9 ~~~~~~~y~~l~~Ei~~igw~~l--~~---id-~~l~~i~l~~~D~~-----~R~H~l~i~l~~~yp~~~P~~~~dlP~- 76 (289)
++.......+|.+|+.+|.-+.. ++ .+ .++....+.+.-.. |....++|.+|.+||..||.+...=|+
T Consensus 12 ~~~~~~~~~rL~kEl~~l~~~~~~gi~~~p~~~~nl~~W~~~I~GP~~TpYegG~f~~~i~fp~~YP~~PP~v~F~T~i~ 91 (172)
T 2awf_A 12 SGLVPRGSLLLRRQLAELNKNPVEGFSAGLIDDNDLYRWEVLIIGPPDTLYEGGVFKAHLTFPKDYPLRPPKMKFITEIW 91 (172)
T ss_dssp -CCCCTTHHHHHHHHHHHHHSCCTTEEEEESSTTCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEECSCCC
T ss_pred CCChHHHHHHHHHHHHHHHhCCCCCEEEEECCCccccccEEEEeCCCCCCcCCcEEEEEEECCcccCCCCCcccccCCCc
Confidence 45566778899999999854432 22 34 47888888887543 678999999999999999998654442
Q ss_pred -------------ccc-------------cccCccccHHHHHHHHHHHH
Q 022965 77 -------------IFN-------------LKWSRKSRLKDLLQQFREHL 99 (289)
Q Consensus 77 -------------~f~-------------l~w~~~s~L~~i~~qF~~~l 99 (289)
.+. -.|++..+|..|+...+..|
T Consensus 92 HPNV~~~G~IClsiL~~~~~d~~~~~~~~~~WsP~~ti~~vL~sI~sll 140 (172)
T 2awf_A 92 HPNVDKNGDVCISILHEPGEDKYGYEKPEERWLPIHTVETIMISVISML 140 (172)
T ss_dssp CTTBCTTCBBCCGGGSCC---------CTTSCCTTCCHHHHHHHHHHHH
T ss_pred cCCCCCCCcEehhhcCCcccccccccccCCCCCCcCcHHHHHHHHHHHH
Confidence 000 15999888888877666555
No 91
>3k9o_A Ubiquitin-conjugating enzyme E2 K; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 3k9p_A 1yla_A 2o25_A
Probab=94.50 E-value=0.28 Score=42.60 Aligned_cols=84 Identities=20% Similarity=0.330 Sum_probs=60.1
Q ss_pred HHHHHHHHHHhccce--------eeeecCCcceEEEEEEeC-----CCCEEEEEEEeCCCCCCCCCCccccCCC----c-
Q 022965 16 SRSVYSEIEEVGWEH--------LVRLSEDLKFLSFRVIDK-----KGRVHCMEIQLDKNYPRSPPSISADVPY----I- 77 (289)
Q Consensus 16 y~~l~~Ei~~igw~~--------l~~id~~l~~i~l~~~D~-----~~R~H~l~i~l~~~yp~~~P~~~~dlP~----~- 77 (289)
-++|.+|+.+|.-+. +.-.+.++......+.-. .|....++|.+|.+||..||.+...=|+ .
T Consensus 7 ~~Rl~kEl~~l~~~~~~~~~~i~~~~~~~nl~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnv~ 86 (201)
T 3k9o_A 7 VQRIKREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIWHPNIS 86 (201)
T ss_dssp HHHHHHHHHHHHTCHHHHTTSEEEEECSTTSSEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCBTTBC
T ss_pred HHHHHHHHHHHHhCCCCCCCCEEEEECCCCccEEEEEEECCCCCCCCCCEEEEEEECCCcCCCCCCccccccCcccCCCc
Confidence 478999999986541 223456799999999843 3578999999999999999988654332 0
Q ss_pred -----c-----ccccCccccHHHHHHHHHHHH
Q 022965 78 -----F-----NLKWSRKSRLKDLLQQFREHL 99 (289)
Q Consensus 78 -----f-----~l~w~~~s~L~~i~~qF~~~l 99 (289)
+ .=.|++..+|..|+...+..|
T Consensus 87 ~~~G~iCl~iL~~~W~p~~~i~~vL~~i~~ll 118 (201)
T 3k9o_A 87 SVTGAICLDILKDQWAAAMTLRTVLLSLQALL 118 (201)
T ss_dssp TTTCBBCCGGGTTTCCTTCCHHHHHHHHHHHH
T ss_pred CCCCeeeCcccccCCCCCCCHHHHHHHHHHHh
Confidence 0 116999888887776555544
No 92
>1fxt_A Ubiquitin-conjugating enzyme E2-24 kDa; ligase; NMR {Saccharomyces cerevisiae} SCOP: d.20.1.1 PDB: 1fzy_A
Probab=94.38 E-value=0.31 Score=40.31 Aligned_cols=83 Identities=27% Similarity=0.417 Sum_probs=58.5
Q ss_pred HHHHHHHHHhcccee-----eeecC-CcceEEEEEEeC-----CCCEEEEEEEeCCCCCCCCCCccccCCC----c----
Q 022965 17 RSVYSEIEEVGWEHL-----VRLSE-DLKFLSFRVIDK-----KGRVHCMEIQLDKNYPRSPPSISADVPY----I---- 77 (289)
Q Consensus 17 ~~l~~Ei~~igw~~l-----~~id~-~l~~i~l~~~D~-----~~R~H~l~i~l~~~yp~~~P~~~~dlP~----~---- 77 (289)
.+|.+|+.++.-+.. .-.+. ++...+..+.-. .|....++|.+|.+||..||.+...=|. .
T Consensus 4 ~RL~~El~~l~~~~~~~i~~~~~~~~~l~~w~~~I~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPni~~~~ 83 (149)
T 1fxt_A 4 KRIMKEIQAVKDDPAAHITLEFVSESDIHHLKGTFLGPPGTPYEGGKFVVDIEVPMEYPFKPPKMQFDTKVYHPNISSVT 83 (149)
T ss_dssp HHHHHHHHHHHHCGGGCCEEEESSSSCSSEEEEEEECCSSSTTCSSEEEEEEECCTTTTSSCCEEEESSCCCBTTBCSSS
T ss_pred HHHHHHHHHHHhCCCCCEEEEECCCCCceEEEEEEECCCCCCcCCcEEEEEEECCCCCCCCCCEEEEeCCCccCCCcCCC
Confidence 589999999854432 22344 788888888742 3578899999999999999998754432 0
Q ss_pred --ccc-----ccCccccHHHHHHHHHHHH
Q 022965 78 --FNL-----KWSRKSRLKDLLQQFREHL 99 (289)
Q Consensus 78 --f~l-----~w~~~s~L~~i~~qF~~~l 99 (289)
+.+ .|++..++..|+...+..|
T Consensus 84 G~iCl~iL~~~W~p~~~i~~vl~~i~~ll 112 (149)
T 1fxt_A 84 GAICLDILKNAWSPVITLKSALISLQALL 112 (149)
T ss_dssp CCBCCHHHHTSCCTTCCHHHHHHHHHHHH
T ss_pred CeEeCCcCCCCCCCCCcHHHHHHHHHHHH
Confidence 001 5998888888777655544
No 93
>2e2c_A Ubiquitin conjugating enzyme; ubiquitin conjugation, ubiquitin carrier protein, thioester ligase; 2.00A {Spisula solidissima} SCOP: d.20.1.1
Probab=94.32 E-value=0.29 Score=40.77 Aligned_cols=85 Identities=14% Similarity=0.257 Sum_probs=60.8
Q ss_pred hHHHHHHHHHHHhcccee----ee-ecCCcceEEEEEEeC-----CCCEEEEEEEeCCCCCCCCCCccccCCCccc----
Q 022965 14 SFSRSVYSEIEEVGWEHL----VR-LSEDLKFLSFRVIDK-----KGRVHCMEIQLDKNYPRSPPSISADVPYIFN---- 79 (289)
Q Consensus 14 ~~y~~l~~Ei~~igw~~l----~~-id~~l~~i~l~~~D~-----~~R~H~l~i~l~~~yp~~~P~~~~dlP~~f~---- 79 (289)
.--.+|.+|+.+|.-+.. +. .+.++....+.+.-. .|....++|.+|.+||..||.+...=|. |+
T Consensus 9 ~~~~RL~kEl~~l~~~~~~~i~~~p~~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i-~HPnv~ 87 (156)
T 2e2c_A 9 SVSKRLQQELRTLLMSGDPGITAFPDGDNLFKWVATLDGPKDTVYESLKYKLTLEFPSDYPYKPPVVKFTTPC-WHPNVD 87 (156)
T ss_dssp CHHHHHHHHHHHHHHHCCTTEEEEESSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCC-CBTTBC
T ss_pred HHHHHHHHHHHHHHhCCCCCEEEEECCCCccEEEEEEECCCCCCcCCcEEEEEEECCCCCCCCCCEEEEeCCc-ccCCCc
Confidence 345899999999864422 12 344788888888743 3678899999999999999998765442 21
Q ss_pred -----------cccCccccHHHHHHHHHHHH
Q 022965 80 -----------LKWSRKSRLKDLLQQFREHL 99 (289)
Q Consensus 80 -----------l~w~~~s~L~~i~~qF~~~l 99 (289)
-.|++..++..|+...+..|
T Consensus 88 ~~G~iCl~iL~~~W~p~~~i~~vL~si~~ll 118 (156)
T 2e2c_A 88 QSGNICLDILKENWTASYDVRTILLSLQSLL 118 (156)
T ss_dssp TTCBBCCGGGTTTCCTTCCHHHHHHHHHHHT
T ss_pred cCceEECccccccCCCCCcHHHHHHHHHHHH
Confidence 15999888888877655544
No 94
>1wzv_A Ubiquitin-conjugating enzyme E2 L6; ligase; 2.10A {Homo sapiens} SCOP: d.20.1.1 PDB: 1wzw_A 2kjh_A
Probab=94.30 E-value=0.27 Score=40.93 Aligned_cols=83 Identities=16% Similarity=0.262 Sum_probs=59.0
Q ss_pred HHHHHHHHHHhcccee--e---e-ecCCcceEEEEEEeCC-----CCEEEEEEEeCCCCCCCCCCccccCCC--------
Q 022965 16 SRSVYSEIEEVGWEHL--V---R-LSEDLKFLSFRVIDKK-----GRVHCMEIQLDKNYPRSPPSISADVPY-------- 76 (289)
Q Consensus 16 y~~l~~Ei~~igw~~l--~---~-id~~l~~i~l~~~D~~-----~R~H~l~i~l~~~yp~~~P~~~~dlP~-------- 76 (289)
-.+|.+|+.++.-+.. + . .+.++...++.+. .. |....++|.+|.+||..||.+...=|.
T Consensus 6 ~~RL~kEl~~l~~~~~~~i~~~~~~~~~l~~w~~~I~-P~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnV~~~ 84 (155)
T 1wzv_A 6 SMRVVKELEDLQKKPPPYLRNLSSDDANVLVWHALLL-PDQPPYHLKAFNLRISFPPEYPFKPPMIKFTTKIYHPNVDEN 84 (155)
T ss_dssp HHHHHHHHHHHHHSCCTTEEEEEECSSCTTEEEEEEC-CCSTTGGGEEEEEEEECCTTTTSSCCEEEESSCCCBTTBCTT
T ss_pred HHHHHHHHHHHHhCCCCCEEEEecCCCchheEEEEEc-CCCCCCCCCEEEEEEECCCCCCCCCCcceeeCCCccCcCCCC
Confidence 3689999999854432 1 2 2457888888887 44 367889999999999999998654442
Q ss_pred ------cc-ccccCccccHHHHHHHHHHHH
Q 022965 77 ------IF-NLKWSRKSRLKDLLQQFREHL 99 (289)
Q Consensus 77 ------~f-~l~w~~~s~L~~i~~qF~~~l 99 (289)
.+ .=.|++..+|..|+...+..|
T Consensus 85 G~iCl~iL~~~~W~p~~~i~~vl~~i~~ll 114 (155)
T 1wzv_A 85 GQICLPIISSENWKPCTKTCQVLEALNVLV 114 (155)
T ss_dssp CBCCCGGGCTTTCCTTCCHHHHHHHHHHHH
T ss_pred CeEeecCCCccCCCCCCcHHHHHHHHHHHH
Confidence 00 126998888888777665554
No 95
>2gjd_A Ubiquitin-conjugating enzyme E2-18 kDa; UBC9P, SMT3, crystallography, ligase; 1.75A {Saccharomyces cerevisiae} PDB: 2eke_A 3ong_B
Probab=94.25 E-value=0.13 Score=43.14 Aligned_cols=84 Identities=20% Similarity=0.375 Sum_probs=58.0
Q ss_pred HHHHHHHHHHhccceee----e-ec-----CCcceEEEEEEeCC-----CCEEEEEEEeCCCCCCCCCCccccCCC----
Q 022965 16 SRSVYSEIEEVGWEHLV----R-LS-----EDLKFLSFRVIDKK-----GRVHCMEIQLDKNYPRSPPSISADVPY---- 76 (289)
Q Consensus 16 y~~l~~Ei~~igw~~l~----~-id-----~~l~~i~l~~~D~~-----~R~H~l~i~l~~~yp~~~P~~~~dlP~---- 76 (289)
..+|.+|+.++.-+... . .+ .++......+.-.. |....++|.+|.+||..||.+...-+.
T Consensus 6 ~~RL~kE~~~l~~~~~~g~~~~p~~~~~~~~nl~~w~~~I~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPn 85 (157)
T 2gjd_A 6 LQRLQEERKKWRKDHPFGFYAKPVKKADGSMDLQKWEAGIPGKEGTNWAGGVYPITVEYPNEYPSKPPKVKFPAGFYHPN 85 (157)
T ss_dssp HHHHHHHHHHHHHCCCTTCEEEEEECTTSCEEEEEEEEEEECCTTSTTTTBEEEEEEECCTTTTTSCCEEECCTTCCCTT
T ss_pred HHHHHHHHHHHHhCCCCCEEEEeccccCCCCcccEEEEEEECCCCCCcCCeEEEEEEEcCCCCCCCCCeeeccCCCccCC
Confidence 47899999998755431 1 11 25777777776432 567889999999999999998754332
Q ss_pred ----------cccc--ccCccccHHHHHHHHHHHH
Q 022965 77 ----------IFNL--KWSRKSRLKDLLQQFREHL 99 (289)
Q Consensus 77 ----------~f~l--~w~~~s~L~~i~~qF~~~l 99 (289)
.+.- .|++..+|..|+...+..|
T Consensus 86 v~~~G~iCl~iL~~~~~W~p~~~i~~vl~~i~~ll 120 (157)
T 2gjd_A 86 VYPSGTICLSILNEDQDWRPAITLKQIVLGVQDLL 120 (157)
T ss_dssp BCTTSBBCCGGGCTTTTCCTTCCHHHHHHHHHHHH
T ss_pred CCCCCcEeeecccCCCCCCCCCcHHHHHHHHHHHH
Confidence 0111 4999888888777655554
No 96
>3bzh_A Ubiquitin-conjugating enzyme E2 E1; structural genomics consortium, ubiquitin-conjuga enzyme, ligase, SGC, UBL conjugation pathway; 1.60A {Homo sapiens} PDB: 1y6l_A
Probab=94.21 E-value=0.23 Score=43.24 Aligned_cols=87 Identities=16% Similarity=0.329 Sum_probs=61.9
Q ss_pred hhHHHHHHHHHHHhcccee-----eeecCCcceEEEEEEeCC-----CCEEEEEEEeCCCCCCCCCCccccCCC------
Q 022965 13 SSFSRSVYSEIEEVGWEHL-----VRLSEDLKFLSFRVIDKK-----GRVHCMEIQLDKNYPRSPPSISADVPY------ 76 (289)
Q Consensus 13 ~~~y~~l~~Ei~~igw~~l-----~~id~~l~~i~l~~~D~~-----~R~H~l~i~l~~~yp~~~P~~~~dlP~------ 76 (289)
+.--.+|.+|+.+|.-+.. .-.+.++....+.+.... |....++|.+|.+||..||.|...=|+
T Consensus 47 s~a~~RL~kEl~~l~~~~~~gi~~~p~~~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~V~F~T~i~HPNV~ 126 (194)
T 3bzh_A 47 STSAKRIQKELADITLDPPPNCSAGPKGDNIYEWRSTILGPPGSVYEGGVFFLDITFTPEYPFKPPKVTFRTRIYHCNIN 126 (194)
T ss_dssp HHHHHHHHHHHHHHHHSCCTTEEEEESSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCBTTBC
T ss_pred cHHHHHHHHHHHHHHhCCCCCceeecccCccccceEEEeCCCCCCccCCEEEEEEECCCcCCCCCccccccCCCccceEC
Confidence 3457899999999865432 123557888888887433 588999999999999999998654332
Q ss_pred --------ccccccCccccHHHHHHHHHHHH
Q 022965 77 --------IFNLKWSRKSRLKDLLQQFREHL 99 (289)
Q Consensus 77 --------~f~l~w~~~s~L~~i~~qF~~~l 99 (289)
.+.-.|++..+|..|+...+..|
T Consensus 127 ~~G~ICL~iL~~~WsP~~ti~~vL~sI~~ll 157 (194)
T 3bzh_A 127 SQGVICLDILKDNWSPALTISKVLLSICSLL 157 (194)
T ss_dssp TTCBBCCGGGTTTCCTTCCHHHHHHHHHHHH
T ss_pred CCCceechhhhccCCCcCcHHHHHHHHHHHH
Confidence 00116999888888876655554
No 97
>1ayz_A UBC2, ubiquitin-conjugating enzyme RAD6; ubiquitin conjugation; 2.60A {Saccharomyces cerevisiae} SCOP: d.20.1.1
Probab=94.15 E-value=0.32 Score=41.36 Aligned_cols=83 Identities=13% Similarity=0.345 Sum_probs=58.9
Q ss_pred HHHHHHHHHHhcccee-----eeecCCcceEEEEEEeCC-----CCEEEEEEEeCCCCCCCCCCccccCCCccc------
Q 022965 16 SRSVYSEIEEVGWEHL-----VRLSEDLKFLSFRVIDKK-----GRVHCMEIQLDKNYPRSPPSISADVPYIFN------ 79 (289)
Q Consensus 16 y~~l~~Ei~~igw~~l-----~~id~~l~~i~l~~~D~~-----~R~H~l~i~l~~~yp~~~P~~~~dlP~~f~------ 79 (289)
-.+|.+|+.+|.-+.. .-.+.++...+..+.-.. |....++|.+|.+||..||.+...=|+ |+
T Consensus 6 ~~RL~kEl~~l~~~~~~gi~~~p~~~nl~~W~~~I~GP~~tpYegG~f~l~i~fp~~YP~~PP~v~F~t~i-~HPNI~~~ 84 (169)
T 1ayz_A 6 RRRLMRDFKRMKEDAPPGVSASPLPDNVMVWNAMIIGPADTPYEDGTFRLLLEFDEEYPNKPPHVKFLSEM-FHPNVYAN 84 (169)
T ss_dssp HHHHHHHHHHHHHSCCTTEEEEEETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCC-CCTTBCTT
T ss_pred HHHHHHHHHHHHhCCCCCEEEEecCCccccceEEEECCCCCCcCCCEEEEEEECcccCCCCCCccccccCC-ccCCCCCC
Confidence 4799999999864432 223556888888887432 578899999999999999998754432 11
Q ss_pred ---------cccCccccHHHHHHHHHHHH
Q 022965 80 ---------LKWSRKSRLKDLLQQFREHL 99 (289)
Q Consensus 80 ---------l~w~~~s~L~~i~~qF~~~l 99 (289)
-.|++..+|..|+...+..|
T Consensus 85 G~ICl~iL~~~WsP~~~i~~vL~si~~ll 113 (169)
T 1ayz_A 85 GEICLDILQNRWTPTYDVASILTSIQSLF 113 (169)
T ss_dssp SBBCCGGGTTTCCTTCCHHHHHHHHHHHH
T ss_pred CeEeehhhccCCCCcCcHHHHHHHHHHHH
Confidence 15999888887776554443
No 98
>2pwq_A Ubiquitin conjugating enzyme; structural genomics consortium, SGC, ligase; 1.90A {Plasmodium yoelii}
Probab=94.15 E-value=0.36 Score=42.80 Aligned_cols=91 Identities=18% Similarity=0.238 Sum_probs=63.5
Q ss_pred CCCChhHHHHHHHHHHHhcccee-----eeecCCcceEEEEEEeCC-----CCEEEEEEEeCCCCCCCCCCccccCCC--
Q 022965 9 SANSSSFSRSVYSEIEEVGWEHL-----VRLSEDLKFLSFRVIDKK-----GRVHCMEIQLDKNYPRSPPSISADVPY-- 76 (289)
Q Consensus 9 ~~~~~~~y~~l~~Ei~~igw~~l-----~~id~~l~~i~l~~~D~~-----~R~H~l~i~l~~~yp~~~P~~~~dlP~-- 76 (289)
....+.--.+|.+|+.+|.-+.. .-.+.++...+..+.-.. |....++|.+|.+||..||.+...=|+
T Consensus 18 ~~~~s~a~~RL~kEl~~l~~~~~~gi~~~p~~~nl~~W~~~I~GP~~TpYegG~f~l~i~fP~~YP~~PP~V~F~T~i~H 97 (216)
T 2pwq_A 18 YFQGSKELLRLQKELKDIENENVQEIDAHIKDSNFFEWVGFIKGPEGTPYEGGHFTLAITIPNDYPYNPPKIKFVTKIWH 97 (216)
T ss_dssp -CCSCHHHHHHHHHHHHHHHSCTTTEEEEECSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCB
T ss_pred ccccCHHHHHHHHHHHHHHhCCCCCEEEEEcCCccceeEEEEeCCCCCCccceEEEEEEECCCcCCCCCCcccccCCCcC
Confidence 33344557899999999865422 223567999998887433 578999999999999999998754432
Q ss_pred --c------ccc-----ccCccccHHHHHHHHHHHH
Q 022965 77 --I------FNL-----KWSRKSRLKDLLQQFREHL 99 (289)
Q Consensus 77 --~------f~l-----~w~~~s~L~~i~~qF~~~l 99 (289)
. +.| .|+|..+|..|+...+..|
T Consensus 98 PNI~~~~G~ICL~iL~~~WsP~~ti~~VL~sI~sLL 133 (216)
T 2pwq_A 98 PNISSQTGAICLDVLKNEWSPALTIRTALLSIQALL 133 (216)
T ss_dssp TTBCTTTCBBCCHHHHHHCCTTCCHHHHHHHHHHHH
T ss_pred CCCcCCCCEEEchhhcccCCCCCcHHHHHHHHHHHH
Confidence 0 011 4998888887776655554
No 99
>1i7k_A Ubiquitin-conjugating enzyme E2 H10; ligase; 1.95A {Homo sapiens} SCOP: d.20.1.1
Probab=94.00 E-value=0.22 Score=42.88 Aligned_cols=87 Identities=14% Similarity=0.205 Sum_probs=60.8
Q ss_pred ChhHHHHHHHHHHHhcccee----ee-ecCCcceEEEEEEeCC-----CCEEEEEEEeCCCCCCCCCCccccCCCccc--
Q 022965 12 SSSFSRSVYSEIEEVGWEHL----VR-LSEDLKFLSFRVIDKK-----GRVHCMEIQLDKNYPRSPPSISADVPYIFN-- 79 (289)
Q Consensus 12 ~~~~y~~l~~Ei~~igw~~l----~~-id~~l~~i~l~~~D~~-----~R~H~l~i~l~~~yp~~~P~~~~dlP~~f~-- 79 (289)
...--.+|.+|+.+|.-+.. +. .+.++......+.-.. |....++|.+|.+||..||.+...=|. |+
T Consensus 28 ~~~~~~RL~kEl~~l~~~~~~gi~~~p~~~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~V~F~T~i-~HPN 106 (179)
T 1i7k_A 28 RGPVGKRLQQELMTLMMSGDKGISAFPESDNLFKWVGTIHGAAGTVYEDLRYKLSLEFPSGYPYNAPTVKFLTPC-YHPN 106 (179)
T ss_dssp --CHHHHHHHHHHHHHHHCCTTEEEEEETTEEEEEEEEEEBCTTSTTBTCEEEEEEECCTTTTTSCCEEEESSCC-CSTT
T ss_pred ChHHHHHHHHHHHHHHhCCCCCEEEEEcCCcccccEEEEECCCCCCcCCCEEEEEEECCCcCCCCCceEEEecCC-ccCc
Confidence 34457899999999865422 12 3446777787877433 578999999999999999998765443 21
Q ss_pred -------------cccCccccHHHHHHHHHHHH
Q 022965 80 -------------LKWSRKSRLKDLLQQFREHL 99 (289)
Q Consensus 80 -------------l~w~~~s~L~~i~~qF~~~l 99 (289)
-.|++..+|..|+...+..|
T Consensus 107 V~~~G~ICL~iL~~~WsP~~ti~~vL~sI~sll 139 (179)
T 1i7k_A 107 VDTQGNISLDILKEKWSALYDVRTILLSIQSLL 139 (179)
T ss_dssp BCTTCBBCCGGGTTTCCTTCCHHHHHHHHHHHH
T ss_pred cccCCeEEcccCcCcCCCCCCHHHHHHHHHHHH
Confidence 15999888888776655544
No 100
>3fn1_B NEDD8-conjugating enzyme UBE2F; ligase, ATP-binding, cell cycle, nucleotide-binding, UBL CON pathway; 2.50A {Homo sapiens} PDB: 2edi_A
Probab=93.90 E-value=0.24 Score=41.72 Aligned_cols=89 Identities=18% Similarity=0.307 Sum_probs=61.1
Q ss_pred CCChhHHHHHHHHHHHhcccee----ee-e-cCCcceEEEEEEeC----CCCEEEEEEEeCCCCCCCCCCccccCCCccc
Q 022965 10 ANSSSFSRSVYSEIEEVGWEHL----VR-L-SEDLKFLSFRVIDK----KGRVHCMEIQLDKNYPRSPPSISADVPYIFN 79 (289)
Q Consensus 10 ~~~~~~y~~l~~Ei~~igw~~l----~~-i-d~~l~~i~l~~~D~----~~R~H~l~i~l~~~yp~~~P~~~~dlP~~f~ 79 (289)
...+.--.+|.+|+.+|.-+.. +. . +.++....+.+-.. .|....++|.+|.+||..||.+...-|+ |+
T Consensus 10 ~~~s~~~~RL~kEl~~l~~~~~~gi~~~~~~~~~l~~w~~~igp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i-~H 88 (167)
T 3fn1_B 10 RRVSVRDKLLVKEVAELEANLPCTCKVHFPDPNKLHCFQLTVTPDEGYYQGGKFQFETEVPDAYNMVPPKVKCLTKI-WH 88 (167)
T ss_dssp CCCCHHHHHHHHHHHHHGGGSCTTEEEECSSSSCTTEEEEEECCSSSTTTTCCEEEEEECCTTBTTBCCEEEECSCC-CC
T ss_pred cchhHHHHHHHHHHHHHHhCCCCCEEEEeCCCCcceeEEEEECCCCCccCCCEEEEEEECCCCCCCCCCeeEecCCc-cc
Confidence 3455667899999999976533 22 2 23577777777432 2577889999999999999998654332 11
Q ss_pred -------------c--------ccCccccHHHHHHHHHHHH
Q 022965 80 -------------L--------KWSRKSRLKDLLQQFREHL 99 (289)
Q Consensus 80 -------------l--------~w~~~s~L~~i~~qF~~~l 99 (289)
| .|++..++..|+...+.+|
T Consensus 89 Pnv~~~G~iCl~iL~~~~~~~~~W~p~~~i~~vl~~i~~ll 129 (167)
T 3fn1_B 89 PNITETGEICLSLLREHSIDGTGWAPTRTLKDVVWGLNSLF 129 (167)
T ss_dssp SSBCTTCCBCCGGGSBCSSSTTSBCTTCCHHHHHHHHHHTT
T ss_pred CCCCCCCEEechhhccCCCCCCCCCCcCcHHHHHHHHHHHH
Confidence 1 5999888887776555543
No 101
>1c4z_D UBCH7, ubiquitin conjugating enzyme E2; bilobal structure, elongated shape, E3 ubiquitin ligase, E2 ubiquitin conjugating enzyme; 2.60A {Homo sapiens} SCOP: d.20.1.1 PDB: 1fbv_C* 3sy2_C 3sqv_C
Probab=93.75 E-value=0.25 Score=41.04 Aligned_cols=82 Identities=17% Similarity=0.379 Sum_probs=57.4
Q ss_pred HHHHHHHHHhcccee-----eee-cCCcceEEEEEEeC----CCCEEEEEEEeCCCCCCCCCCccccCCCcc--------
Q 022965 17 RSVYSEIEEVGWEHL-----VRL-SEDLKFLSFRVIDK----KGRVHCMEIQLDKNYPRSPPSISADVPYIF-------- 78 (289)
Q Consensus 17 ~~l~~Ei~~igw~~l-----~~i-d~~l~~i~l~~~D~----~~R~H~l~i~l~~~yp~~~P~~~~dlP~~f-------- 78 (289)
.+|.+|+.+|.-+.. +.. +.++....+.+.-. .|....++|.+|.+||..||.+...=|. |
T Consensus 5 ~RL~kEl~~l~~~~~~~~~~~~~~~~~l~~w~~~i~P~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i-~HPnv~~~G 83 (154)
T 1c4z_D 5 RRLMKELEEIRKCGMKNFRNIQVDEANLLTWQGLIVPDNPPYDKGAFRIEINFPAEYPFKPPKITFKTKI-YHPNIDEKG 83 (154)
T ss_dssp TTHHHHHTTCSSSCCSSCEEECSSCSSSSEEEEEECCCSSSCCSCCEEEEEECCTTTTTSCCEEEESSCC-CCTTBCTTC
T ss_pred HHHHHHHHHHHhCCCCCEEEeeCCCCchheEEEEEeCCCCCccCCeEEEEEEeCCCCCCCCCEEEEeCCC-ccccCCCCC
Confidence 478999999865432 222 34688888888621 2567889999999999999998764442 1
Q ss_pred -----cc---ccCccccHHHHHHHHHHHH
Q 022965 79 -----NL---KWSRKSRLKDLLQQFREHL 99 (289)
Q Consensus 79 -----~l---~w~~~s~L~~i~~qF~~~l 99 (289)
.| .|++..++..|+...+..|
T Consensus 84 ~iCl~iL~~~~W~p~~~i~~vl~~i~~ll 112 (154)
T 1c4z_D 84 QVCLPVISAENWKPATKTDQVIQSLIALV 112 (154)
T ss_dssp BBCCTTTSSSSCCTTCCHHHHHHHHHHHH
T ss_pred EEECCCCCCCCCCCCCcHHHHHHHHHHHH
Confidence 11 5999888887777655544
No 102
>2q0v_A Ubiquitin-conjugating enzyme E2, putative; malaria, structural G structural genomics consortium, SGC, ligase; 2.40A {Plasmodium falciparum} PDB: 3e95_C
Probab=93.69 E-value=0.26 Score=41.45 Aligned_cols=84 Identities=27% Similarity=0.470 Sum_probs=59.3
Q ss_pred HHHHHHHHHHhccce-e----eee-c-C--CcceEEEEEEeCC-----CCEEEEEEEeCCCCCCCCCCccccCCC-----
Q 022965 16 SRSVYSEIEEVGWEH-L----VRL-S-E--DLKFLSFRVIDKK-----GRVHCMEIQLDKNYPRSPPSISADVPY----- 76 (289)
Q Consensus 16 y~~l~~Ei~~igw~~-l----~~i-d-~--~l~~i~l~~~D~~-----~R~H~l~i~l~~~yp~~~P~~~~dlP~----- 76 (289)
-.+|.+|+.++.-+. . +.. + . ++......+.-.. |....++|.+|.+||..||.+...=|+
T Consensus 23 ~~RL~kEl~~l~~~~~~~~i~~~~~~~~d~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~v~F~t~i~HPNV 102 (156)
T 2q0v_A 23 SFRLLDELERGQKGNVSEGVSFGLESADDITLSNWSCTIFGQPGTVFENRIYSLTIFCDDNYPDSPPTVKFDTKIEMSCV 102 (156)
T ss_dssp HHHHHHHHHHHHCC-CCTTEEEEESSTTCTTCCEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESBCCCCTTB
T ss_pred HHHHHHHHHHHHhCCCCCCeEEEECCCccccceeeEEEEECCCCCCcCCcEEEEEEECCCcCCCCCCeEEEEcccccCCC
Confidence 479999999997652 1 222 2 2 3888888888433 578999999999999999998654332
Q ss_pred ----cc---cc----ccCccccHHHHHHHHHHHH
Q 022965 77 ----IF---NL----KWSRKSRLKDLLQQFREHL 99 (289)
Q Consensus 77 ----~f---~l----~w~~~s~L~~i~~qF~~~l 99 (289)
.+ .+ .|++..+|..|+...+..|
T Consensus 103 ~~~G~icisCL~iL~~WsP~~ti~~vL~sI~~ll 136 (156)
T 2q0v_A 103 DNCGRVIKNNLHILKNWNRNYTIETILISLRQEM 136 (156)
T ss_dssp CTTSBBCGGGSHHHHTCCTTCCHHHHHHHHHHHT
T ss_pred ccCCeEehhhcccccCCCCcCcHHHHHHHHHHHH
Confidence 11 11 6999888888777655554
No 103
>2grr_A Ubiquitin-conjugating enzyme E2 I; ubiquitin, conjugation, small ubiquitin like modifer, SMT3, ligase; 1.30A {Homo sapiens} PDB: 2grq_A 2grn_A 2pe6_A 2gro_A 2grp_A 1u9a_A 1u9b_A 2vrr_A 2px9_B 1z5s_A 2xwu_A 3uin_A 3uio_A 3uip_A* 1kps_A 2o25_C 1a3s_A 3a4s_A 2uyz_A
Probab=93.54 E-value=0.27 Score=41.30 Aligned_cols=84 Identities=21% Similarity=0.351 Sum_probs=59.0
Q ss_pred HHHHHHHHHHHhcccee----ee-e-----cCCcceEEEEEEeC-----CCCEEEEEEEeCCCCCCCCCCccccCCCcc-
Q 022965 15 FSRSVYSEIEEVGWEHL----VR-L-----SEDLKFLSFRVIDK-----KGRVHCMEIQLDKNYPRSPPSISADVPYIF- 78 (289)
Q Consensus 15 ~y~~l~~Ei~~igw~~l----~~-i-----d~~l~~i~l~~~D~-----~~R~H~l~i~l~~~yp~~~P~~~~dlP~~f- 78 (289)
--.+|.+|+.+|.-+.. +. . +.++...++.+.-. .|....++|.+|.+||..||.+...-|. |
T Consensus 8 a~~RL~kE~~~l~~~~~~g~~~~p~~~~~~~~nl~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i-~H 86 (161)
T 2grr_A 8 ALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPL-FH 86 (161)
T ss_dssp HHHHHHHHHHHHHHSCCTTCEEEEEECTTSCEEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCC-CS
T ss_pred HHHHHHHHHHHHHhCCCCCEEEEeccccCCCCCccEEEEEEECCCCCCccCCEEEEEEEcCcccCCCCCEEEEecCc-cc
Confidence 45799999999865542 11 1 14677778888742 3578899999999999999998765442 1
Q ss_pred ------------cc----ccCccccHHHHHHHHHHHH
Q 022965 79 ------------NL----KWSRKSRLKDLLQQFREHL 99 (289)
Q Consensus 79 ------------~l----~w~~~s~L~~i~~qF~~~l 99 (289)
.| .|++..+|..|+...+..|
T Consensus 87 Pnv~~~G~iCl~iL~~~~~W~p~~~i~~vl~~i~~ll 123 (161)
T 2grr_A 87 PNVYPSGTVCLSILEEDKDWRPAITIKQILLGIQELL 123 (161)
T ss_dssp TTBCTTSBBCCGGGCTTTTCCTTCCHHHHHHHHHHHH
T ss_pred CCCCCCCeEeehhcCCCCCcCCCCcHHHHHHHHHHHH
Confidence 11 4999888888777655544
No 104
>1y8x_A Ubiquitin-conjugating enzyme E2 M; ubiquitin-conjugating enzyme E2 M, ligase; 2.40A {Homo sapiens} SCOP: d.20.1.1
Probab=93.46 E-value=0.53 Score=39.52 Aligned_cols=85 Identities=12% Similarity=0.344 Sum_probs=58.7
Q ss_pred hHHHHHHHHHHHhccceeeee----cCCcceEEEEEEeC----CCCEEEEEEEeCCCCCCCCCCccccCCCccc------
Q 022965 14 SFSRSVYSEIEEVGWEHLVRL----SEDLKFLSFRVIDK----KGRVHCMEIQLDKNYPRSPPSISADVPYIFN------ 79 (289)
Q Consensus 14 ~~y~~l~~Ei~~igw~~l~~i----d~~l~~i~l~~~D~----~~R~H~l~i~l~~~yp~~~P~~~~dlP~~f~------ 79 (289)
.--.+|.+|+.++.-..-+++ +.++....+.+--. .|....++|.+|.+||..||.+...-|. |+
T Consensus 6 ~~~~RL~kEl~~l~~~~~~~~~~~~~~~l~~w~~~igp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i-~HPnv~~~ 84 (160)
T 1y8x_A 6 AAQLRIQKDINELNLPKTCDISFSDPDDLLNFKLVICPDEGFYKSGKFVFSFKVGQGYPHDPPKVKCETMV-YHPNIDLE 84 (160)
T ss_dssp HHHHHHHHHHHTCCCCTTEEEECSSTTCTTEEEEEECCSSSTTTTBCEEEEEECCTTTTTSCCEEEECSCC-CBTTBCTT
T ss_pred HHHHHHHHHHHhcCCCCCeEEEeccCCccceEEEEECCCCCCCCCCEEEEEEeCCCcCCCCCCEEEEecCC-ccCcCCCC
Confidence 456899999999842222322 35688877776322 1467889999999999999998765442 11
Q ss_pred ---------cccCccccHHHHHHHHHHHH
Q 022965 80 ---------LKWSRKSRLKDLLQQFREHL 99 (289)
Q Consensus 80 ---------l~w~~~s~L~~i~~qF~~~l 99 (289)
-.|++..++..|+...+..|
T Consensus 85 G~iCl~iL~~~W~p~~~i~~vL~~i~~ll 113 (160)
T 1y8x_A 85 GNVCLNILREDWKPVLTINSIIYGLQYLF 113 (160)
T ss_dssp CBBCCGGGTTTCCTTCCHHHHHHHHHHHH
T ss_pred CeEEcccchhhccCCCCHHHHHHHHHHHH
Confidence 15999888888777665544
No 105
>2ucz_A UBC7, ubiquitin conjugating enzyme; ubiquitin conjugation, ligase, yeast; 2.93A {Saccharomyces cerevisiae} SCOP: d.20.1.1
Probab=93.46 E-value=0.56 Score=39.34 Aligned_cols=84 Identities=17% Similarity=0.338 Sum_probs=59.4
Q ss_pred HHHHHHHHHHhcccee--e---eec-CCcceEEEEEEeCC-----CCEEEEEEEeCCCCCCCCCCccccCCC--------
Q 022965 16 SRSVYSEIEEVGWEHL--V---RLS-EDLKFLSFRVIDKK-----GRVHCMEIQLDKNYPRSPPSISADVPY-------- 76 (289)
Q Consensus 16 y~~l~~Ei~~igw~~l--~---~id-~~l~~i~l~~~D~~-----~R~H~l~i~l~~~yp~~~P~~~~dlP~-------- 76 (289)
-.+|.+|+.+|.-+.. + -.+ .++......+.-.. |....++|.+|.+||..||.+...=|+
T Consensus 6 ~~RL~kEl~~l~~~~~~gi~~~~~~~~~l~~w~~~i~GP~~tpYegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPNv~~~ 85 (165)
T 2ucz_A 6 QKRLLKELQQLIKDSPPGIVAGPKSENNIFIWDCLIQGPPDTPYADGVFNAKLEFPKDYPLSPPKLTFTPSILHPNIYPN 85 (165)
T ss_dssp HHHHHHHHHHHHHSCCTTEEEEESSSSCCSEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCSCTTBCTT
T ss_pred HHHHHHHHHHHHhCCCCCEEEEECCCCCccEEEEEEECCCCCCccCcEEEEEEECCccCCCCCCEEEEeCCCccCCCCCC
Confidence 4789999999865432 2 234 47888888887543 578899999999999999988643332
Q ss_pred ------cc-------------ccccCccccHHHHHHHHHHHH
Q 022965 77 ------IF-------------NLKWSRKSRLKDLLQQFREHL 99 (289)
Q Consensus 77 ------~f-------------~l~w~~~s~L~~i~~qF~~~l 99 (289)
.+ .=.|++..++..|+...+..|
T Consensus 86 G~iCl~iL~~~~~~~~~~~~~~~~W~p~~~i~~vL~si~~ll 127 (165)
T 2ucz_A 86 GEVCISILHSPGDDPNMYELAEERWSPVQSVEKILLSVMSML 127 (165)
T ss_dssp SBBCCGGGSCCCSCTTSTTTTTTSCCTTCCHHHHHHHHHHHH
T ss_pred CcEeehhhCCccccccccCCCCCCCCCcCcHHHHHHHHHHHH
Confidence 00 125998888888777666554
No 106
>1jat_B Ubiquitin-conjugating enzyme variant MMS2; UEV, ligase; 1.60A {Saccharomyces cerevisiae} SCOP: d.20.1.1 PDB: 2gmi_B
Probab=93.38 E-value=0.75 Score=37.54 Aligned_cols=83 Identities=19% Similarity=0.366 Sum_probs=57.1
Q ss_pred HHHHHHHHHhccce-e----eee-c-C--CcceEEEEEEeC-----CCCEEEEEEEeCCCCCCCCCCccccCCC------
Q 022965 17 RSVYSEIEEVGWEH-L----VRL-S-E--DLKFLSFRVIDK-----KGRVHCMEIQLDKNYPRSPPSISADVPY------ 76 (289)
Q Consensus 17 ~~l~~Ei~~igw~~-l----~~i-d-~--~l~~i~l~~~D~-----~~R~H~l~i~l~~~yp~~~P~~~~dlP~------ 76 (289)
.+|.+|+.++.-+. . +.. + . ++...+..+.-. .|....++|.+|.+||..||.+...=|+
T Consensus 9 ~RL~kEl~~l~~~~~~~~~~~~~~~~~d~nl~~w~~~i~GP~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnv~ 88 (138)
T 1jat_B 9 FRLLEELEKGEKGFGPESCSYGLADSDDITMTKWNGTILGPPHSNHENRIYSLSIDCGPNYPDSPPKVTFISKINLPCVN 88 (138)
T ss_dssp HHHHHHHHHHHC----CCEEEEESSTTCTTCCEEEEEEECCSSSTTTTCEEEEEEECCTTTTTSCCEEEESBCCCCTTBC
T ss_pred HHHHHHHHHHHhcCCCCCEEEEeCCCCCCcceEEEEEEECCCCCCccceEEEEEEECCCCCCCCCCceEEEcccccCCEe
Confidence 69999999996652 2 223 2 2 377888888733 2578999999999999999988643322
Q ss_pred ----cc--cc----ccCccccHHHHHHHHHHHH
Q 022965 77 ----IF--NL----KWSRKSRLKDLLQQFREHL 99 (289)
Q Consensus 77 ----~f--~l----~w~~~s~L~~i~~qF~~~l 99 (289)
.. .| .|++..++..|+...+..|
T Consensus 89 ~~~G~i~~cL~~l~~W~p~~~i~~vl~~i~~ll 121 (138)
T 1jat_B 89 PTTGEVQTDFHTLRDWKRAYTMETLLLDLRKEM 121 (138)
T ss_dssp TTTCBBCTTSHHHHTCCTTCCHHHHHHHHHHHH
T ss_pred CCCCEEeeecccCCCCCCcCcHHHHHHHHHHHH
Confidence 11 11 6998888888877666555
No 107
>3rz3_A Ubiquitin-conjugating enzyme E2 R1; ubiquitin conjugating enzyme domain, E2 domain, ligase-ligas inhibitor complex; HET: U94; 2.30A {Homo sapiens} PDB: 2ob4_A
Probab=93.24 E-value=0.46 Score=40.76 Aligned_cols=86 Identities=19% Similarity=0.339 Sum_probs=61.4
Q ss_pred hHHHHHHHHHHHhcccee----ee-e-cCCcceEEEEEEeC-----CCCEEEEEEEeCCCCCCCCCCccccCCC------
Q 022965 14 SFSRSVYSEIEEVGWEHL----VR-L-SEDLKFLSFRVIDK-----KGRVHCMEIQLDKNYPRSPPSISADVPY------ 76 (289)
Q Consensus 14 ~~y~~l~~Ei~~igw~~l----~~-i-d~~l~~i~l~~~D~-----~~R~H~l~i~l~~~yp~~~P~~~~dlP~------ 76 (289)
.--++|.+|+.+|.-+.. +. . +.++....+.+.-. .|....++|.+|.+||..||.+...=|.
T Consensus 7 ~a~kRL~kEl~~l~~~~~~gi~~~~~~~~nl~~W~~~I~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnV~ 86 (183)
T 3rz3_A 7 SSQKALLLELKGLQEEPVEGFRVTLVDEGDLYNWEVAIFGPPNTYYEGGYFKARLKFPIDYPYSPPAFRFLTKMWHPNIY 86 (183)
T ss_dssp HHHHHHHHHHHHHHHSCCTTEEEEECTTCCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCCTTBC
T ss_pred HHHHHHHHHHHHHHhCCCCCEEEEecCccchhheeeeeeCCCCCCCCCCeEEEEEECCCCCCCCCCeeEecCCCccCCCC
Confidence 346899999999865543 22 2 34688889988732 3578889999999999999998654332
Q ss_pred --------ccc-------------cccCccccHHHHHHHHHHHH
Q 022965 77 --------IFN-------------LKWSRKSRLKDLLQQFREHL 99 (289)
Q Consensus 77 --------~f~-------------l~w~~~s~L~~i~~qF~~~l 99 (289)
.+. -.|++..++..|+...+.+|
T Consensus 87 ~~G~iClsiL~~~~~~~~~~~~~~~~W~p~~~i~~vL~si~~ll 130 (183)
T 3rz3_A 87 ETGDVCISILHPPVDDPQSGELPSERWNPTQNVRTILLSVISLL 130 (183)
T ss_dssp TTSBBCCTTC--------------CCCCTTCCHHHHHHHHHHHH
T ss_pred CCCcEehhhcCcccccccccccccCCCCCcCcHHHHHHHHHHHH
Confidence 011 25999888888877666555
No 108
>3ceg_A Baculoviral IAP repeat-containing protein 6; apoptosis, ligase, protease inhibitor, thiol protease inhibitor, UBL conjugation pathway; HET: MSE; 2.01A {Homo sapiens}
Probab=93.19 E-value=0.49 Score=44.54 Aligned_cols=91 Identities=21% Similarity=0.357 Sum_probs=64.6
Q ss_pred CCCChhHHHHHHHHHHHhcccee--------e-eecCCcceEEEEEEeCC-----CCEEEEEEEeCCCCCCCCCCccccC
Q 022965 9 SANSSSFSRSVYSEIEEVGWEHL--------V-RLSEDLKFLSFRVIDKK-----GRVHCMEIQLDKNYPRSPPSISADV 74 (289)
Q Consensus 9 ~~~~~~~y~~l~~Ei~~igw~~l--------~-~id~~l~~i~l~~~D~~-----~R~H~l~i~l~~~yp~~~P~~~~dl 74 (289)
+..++.-..+|.+|+.+|.-+.. + -.+.++...++.+.-.. |....++|.+|.+||..||.|...-
T Consensus 71 ~~~s~~~~kRL~kEl~~L~k~~p~g~~~~i~v~~~ednl~~w~~~I~GP~~TpYegG~F~l~I~fP~dYP~~PP~V~F~T 150 (323)
T 3ceg_A 71 DANSAARARRLAQEAVTLSTSLPLSSSSSVFVRCDEERLDIMKVLITGPADTPYANGCFEFDVYFPQDYPSSPPLVNLET 150 (323)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHCCCCSSCCEEEEEESSCTTEEEEEEEBCTTSTTBTCEEEEEEECCTTTTTSCCEEEECC
T ss_pred CCCCHHHHHHHHHHHHHHHhCCCCCcccceeecccCCCccccEEEEeCCCCCCcCCCEEEEEEeCCCCCCCCCCeEEEec
Confidence 44567788999999999864422 1 13557888888887543 4788999999999999999998655
Q ss_pred CC----ccc-------------c---------ccCccc-cHHHHHHHHHHHH
Q 022965 75 PY----IFN-------------L---------KWSRKS-RLKDLLQQFREHL 99 (289)
Q Consensus 75 P~----~f~-------------l---------~w~~~s-~L~~i~~qF~~~l 99 (289)
|. .|+ | .|+|.. +|..|+...+..|
T Consensus 151 ~~g~~~ifHPNV~~~G~ICLsiL~~~~g~~~e~WsPa~stI~~VLlsIqsLL 202 (323)
T 3ceg_A 151 TGGHSVRFNPNLYNDGKVCLSILNTWHGRPEEKWNPQTSSFLQVLVSVQSLI 202 (323)
T ss_dssp STTTTCCCBTTBCTTCBBCCGGGTSSCCCGGGSCCTTTCCHHHHHHHHHHHT
T ss_pred cCCCcccccCCCCcCCeEechhhccccCCCcCCCCcCcCCHHHHHHHHHHHH
Confidence 41 111 1 588865 7887776655554
No 109
>1yrv_A Ubiquitin-conjugating ligase MGC351130; structural genomics consortium, SGC, ubiquitin- conjugating enzyme; 2.18A {Homo sapiens} SCOP: d.20.1.1
Probab=93.16 E-value=0.69 Score=39.29 Aligned_cols=86 Identities=16% Similarity=0.223 Sum_probs=60.6
Q ss_pred hHHHHHHHHHHHhcccee-----eeecCCcceEEEEEEeCC-----CCEEEEEEEeCCCCCCCCCCccccCCC----c--
Q 022965 14 SFSRSVYSEIEEVGWEHL-----VRLSEDLKFLSFRVIDKK-----GRVHCMEIQLDKNYPRSPPSISADVPY----I-- 77 (289)
Q Consensus 14 ~~y~~l~~Ei~~igw~~l-----~~id~~l~~i~l~~~D~~-----~R~H~l~i~l~~~yp~~~P~~~~dlP~----~-- 77 (289)
.-..+|.+|+.+|.-+.. .-.+.++....+.+.-.. |....++|.+|.+||..||.+...=|+ .
T Consensus 23 ~a~~RL~kEl~~l~~~~~~gi~~~p~~~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~V~F~T~i~HPNI~~ 102 (169)
T 1yrv_A 23 RAYLLLHRDFCDLKENNYKGITAKPVSEDMMEWEVEIEGLQNSVWQGLVFQLTIHFTSEYNYAPPVVKFITIPFHPNVDP 102 (169)
T ss_dssp HHHHHHHHHHHHHHHHCCTTEEEEECSTTSCEEEEEEECCTTSTTTTCEEEEEEECCTTBTTBCCEEEESSCCCCTTBCT
T ss_pred HHHHHHHHHHHHHHhCCCCCEEEEEcCCccccceeEEECCCCCCccceEEEEEEECCccCCCCCCcceecCCCccCcccC
Confidence 346899999999854322 234567888898887433 578999999999999999998754432 1
Q ss_pred ----c-----c--cccCccccHHHHHHHHHHHH
Q 022965 78 ----F-----N--LKWSRKSRLKDLLQQFREHL 99 (289)
Q Consensus 78 ----f-----~--l~w~~~s~L~~i~~qF~~~l 99 (289)
+ . -.|++..+|..|+...+..|
T Consensus 103 ~~G~ICL~iL~~~~~WsP~~ti~~vL~sI~sll 135 (169)
T 1yrv_A 103 HTGQPCIDFLDNPEKWNTNYTLSSILLALQVML 135 (169)
T ss_dssp TTCCBCCHHHHCGGGCCTTCCHHHHHHHHHHHH
T ss_pred CCCeEeehhhcCCcCCCCcCCHHHHHHHHHHHH
Confidence 0 0 15888888887776655554
No 110
>1yh2_A HSPC150 protein similar to ubiquitin-conjugating enzyme; structural genomics consortium, HSCP150, ligase, SGC; 2.00A {Homo sapiens} SCOP: d.20.1.1
Probab=92.98 E-value=0.9 Score=38.36 Aligned_cols=86 Identities=15% Similarity=0.268 Sum_probs=60.5
Q ss_pred hHHHHHHHHHHHhcccee----ee-ecCCcceEEEEEEeCC-----CCEEEEEEEeCCCCCCCCCCccccCCC-------
Q 022965 14 SFSRSVYSEIEEVGWEHL----VR-LSEDLKFLSFRVIDKK-----GRVHCMEIQLDKNYPRSPPSISADVPY------- 76 (289)
Q Consensus 14 ~~y~~l~~Ei~~igw~~l----~~-id~~l~~i~l~~~D~~-----~R~H~l~i~l~~~yp~~~P~~~~dlP~------- 76 (289)
+--.+|.+|+.++.-+.. +. .+.++......+.-.. |....++|.+|.+||..||.+...=|.
T Consensus 4 ~~~~RL~kEl~~l~~~~~~gi~~~~~~~~l~~w~~~I~GP~~tpYegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPNv~~ 83 (169)
T 1yh2_A 4 QRASRLKRELHMLATEPPPGITCWQDKDQMDDLRAQILGGANTPYEKGVFKLEVIIPERYPFEPPQIRFLTPIYHPNIDS 83 (169)
T ss_dssp HHHHHHHHHHHHHHHSCCTTEEEEESSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCBTTBCT
T ss_pred HHHHHHHHHHHHHHhCCCCCEEEEeCCCchheEEEEEECCCCCCccCCEEEEEEEeCCCCCCCCcEEEeecCCccccCCc
Confidence 445799999999854432 22 2456888888887433 578999999999999999998754442
Q ss_pred -------ccc----cccCccccHHHHHHHHHHHH
Q 022965 77 -------IFN----LKWSRKSRLKDLLQQFREHL 99 (289)
Q Consensus 77 -------~f~----l~w~~~s~L~~i~~qF~~~l 99 (289)
.+. -.|++..+|..|+...+..|
T Consensus 84 ~G~iCl~iL~~~~~~~W~p~~~i~~vL~si~~ll 117 (169)
T 1yh2_A 84 AGRICLDVLKLPPKGAWRPSLNIATVLTSIQLLM 117 (169)
T ss_dssp TCBBCCGGGSCTTTSCCCTTSCHHHHHHHHHHHH
T ss_pred CCeEecccccCCcccCCCCCCcHHHHHHHHHHHH
Confidence 011 25998888888776555444
No 111
>3o2u_A NEDD8-conjugating enzyme UBC12; E2 conjugase, ligase; 2.00A {Saccharomyces cerevisiae} PDB: 3tdi_C
Probab=92.88 E-value=0.78 Score=39.67 Aligned_cols=89 Identities=18% Similarity=0.255 Sum_probs=62.3
Q ss_pred CCChhHHHHHHHHHHHhccceeeee-------cCCcc---eEEEEEEeCC----CCEEEEEEEeCCCCCCCCCCccccCC
Q 022965 10 ANSSSFSRSVYSEIEEVGWEHLVRL-------SEDLK---FLSFRVIDKK----GRVHCMEIQLDKNYPRSPPSISADVP 75 (289)
Q Consensus 10 ~~~~~~y~~l~~Ei~~igw~~l~~i-------d~~l~---~i~l~~~D~~----~R~H~l~i~l~~~yp~~~P~~~~dlP 75 (289)
.....--.+|.+|+.+|.=..-+.+ +.|+. ...+.+.... |....++|.+|.+||..||.+...-|
T Consensus 25 ~~~s~a~~RL~kEl~~l~~~~~i~~~~~~~p~~~nl~~~~~w~~~I~p~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~ 104 (190)
T 3o2u_A 25 PNLSAARIRLKRDLDSLDLPPTVTLNVITSPDSADRSQSPKLEVIVRPDEGYYNYGSINFNLDFNEVYPIEPPKVVCLKK 104 (190)
T ss_dssp CCCCHHHHHHHHHHHTCCCCTTEEEEEEECTTCCCTTSCCEEEEEECCSSSTTTTCCEEEEEECCTTTTTSCCEEEECSC
T ss_pred CCccHHHHHHHHHHHhccCCCCEEEEecCCCCCccCCcCCeEEEEEcCCCCCCCCCEEEEEEECCCCCCCCCceeEEecC
Confidence 3445568899999999962212222 34677 7788877432 57788999999999999999865544
Q ss_pred Cccc---------------cccCccccHHHHHHHHHHHH
Q 022965 76 YIFN---------------LKWSRKSRLKDLLQQFREHL 99 (289)
Q Consensus 76 ~~f~---------------l~w~~~s~L~~i~~qF~~~l 99 (289)
. |+ -.|++..++..|+...+..|
T Consensus 105 i-~HPnV~~~G~iCl~iL~~~W~p~~~i~~vL~~i~~ll 142 (190)
T 3o2u_A 105 I-FHPNIDLKGNVCLNILREDWSPALDLQSIITGLLFLF 142 (190)
T ss_dssp C-CCTTBCTTSBBCCGGGTTTCCTTCCHHHHHHHHHHHH
T ss_pred c-ccCCCCCCCeEechhccCCCCCCCCHHHHHHHHHHHH
Confidence 2 11 25999888888877665544
No 112
>3e46_A Ubiquitin-conjugating enzyme E2-25 kDa; huntington interacting, ligase, alternative splicing, cytoplasm, UBL conjugation, UBL conjugation pathway; 1.86A {Homo sapiens} SCOP: a.5.2.1 d.20.1.1 PDB: 3f92_A*
Probab=92.82 E-value=0.62 Score=42.27 Aligned_cols=86 Identities=20% Similarity=0.308 Sum_probs=61.5
Q ss_pred hHHHHHHHHHHHhccc--------eeeeecCCcceEEEEEEeC-----CCCEEEEEEEeCCCCCCCCCCccccCCC----
Q 022965 14 SFSRSVYSEIEEVGWE--------HLVRLSEDLKFLSFRVIDK-----KGRVHCMEIQLDKNYPRSPPSISADVPY---- 76 (289)
Q Consensus 14 ~~y~~l~~Ei~~igw~--------~l~~id~~l~~i~l~~~D~-----~~R~H~l~i~l~~~yp~~~P~~~~dlP~---- 76 (289)
.-..+|.+|+.+|.-+ .+.-.+.++......+.-. .|....++|.+|.+||..||.+...=|+
T Consensus 57 ~a~~RL~kEl~~l~~~~~~~~~gi~v~p~~dnl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~V~F~T~i~HPN 136 (253)
T 3e46_A 57 IAVQRIKREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIWHPN 136 (253)
T ss_dssp HHHHHHHHHHHHHHHCHHHHTTSEEEEECSTTSSEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCBTT
T ss_pred HHHHHHHHHHHHHHhCCCCCCCCEEEEECCCcccEEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCCeeeecCCCccCC
Confidence 3478999999998543 1233466799999998832 3578999999999999999987654331
Q ss_pred c------c-----ccccCccccHHHHHHHHHHHH
Q 022965 77 I------F-----NLKWSRKSRLKDLLQQFREHL 99 (289)
Q Consensus 77 ~------f-----~l~w~~~s~L~~i~~qF~~~l 99 (289)
. + .-.|++..+|..|+...+..|
T Consensus 137 V~~~~G~ICL~iL~~~WsP~~ti~~vL~sI~~ll 170 (253)
T 3e46_A 137 ISSVTGAICLDILKDQWAAAMTLRTVLLSLQALL 170 (253)
T ss_dssp BCTTTCBBCCGGGTTCCCTTCCHHHHHHHHHHHH
T ss_pred ccCCCCeeecccccCCCCCCCCHHHHHHHHHHHh
Confidence 0 0 116999888888776555544
No 113
>2f4w_A Ubiquitin-conjugating enzyme E2, J2; endoplasmic reticulum, ligase, UBL conjugation pathway, structural genomics consortium (SGC); 2.00A {Homo sapiens} SCOP: d.20.1.1
Probab=92.72 E-value=0.45 Score=41.12 Aligned_cols=88 Identities=14% Similarity=0.246 Sum_probs=59.4
Q ss_pred ChhHHHHHHHHHHHhcccee-----eeecCCcceEEEEEEeC-----CCCEEEEEEEeCCCCCCCCCCccccCCCc-c--
Q 022965 12 SSSFSRSVYSEIEEVGWEHL-----VRLSEDLKFLSFRVIDK-----KGRVHCMEIQLDKNYPRSPPSISADVPYI-F-- 78 (289)
Q Consensus 12 ~~~~y~~l~~Ei~~igw~~l-----~~id~~l~~i~l~~~D~-----~~R~H~l~i~l~~~yp~~~P~~~~dlP~~-f-- 78 (289)
+..--.+|.+|+.+|.-+.. .-.+.++...++.+.-. .|....++|.+|.+||..||.+...=|.+ |
T Consensus 12 ~~~a~~RL~kEl~~l~~~~~~~i~~~p~~~nl~~W~~~I~GP~~TpYegG~f~l~i~fP~~YP~~PP~v~f~T~~~~~~~ 91 (187)
T 2f4w_A 12 PTTATQRLKQDYLRIKKDPVPYICAEPLPSNILEWHYVVRGPEMTPYEGGYYHGKLIFPREFPFKPPSIYMITPNGRFKC 91 (187)
T ss_dssp --CHHHHHHHHHHHHHHSCCTTEEEEEETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEECSCCSSBCT
T ss_pred ccHHHHHHHHHHHHHHhCCCCCEEEEEcCCccceeEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCcccccCCCceecc
Confidence 34557899999999864432 22355788888888733 35788899999999999999986544410 0
Q ss_pred -------cc-----ccCccccHHHHHHHHHHHH
Q 022965 79 -------NL-----KWSRKSRLKDLLQQFREHL 99 (289)
Q Consensus 79 -------~l-----~w~~~s~L~~i~~qF~~~l 99 (289)
.+ .|++..++..|+...+..|
T Consensus 92 ~G~ICL~iL~~~~~~W~P~~ti~~vL~si~sll 124 (187)
T 2f4w_A 92 NTRLCLSITDFHPDTWNPAWSVSTILTGLLSFM 124 (187)
T ss_dssp TSCBC----------CCTTCCHHHHHHHHHHHH
T ss_pred CCeEeeeccccCccCCCCcCcHHHHHHHHHHHh
Confidence 12 5998888887765544444
No 114
>1yf9_A Ubiquitin carrier protein 4; SGPP, structural genomics, PSI, protein structure initiative ubiquitin conjugating enzyme; 2.00A {Leishmania major} SCOP: d.20.1.1
Probab=92.19 E-value=0.74 Score=39.18 Aligned_cols=80 Identities=18% Similarity=0.251 Sum_probs=56.9
Q ss_pred HHHHHHHHHHhcccee-eeecCCcceEEEEEEeCC-----CCEEEEEEEeCCCCCCCCCCccccCCC----c------cc
Q 022965 16 SRSVYSEIEEVGWEHL-VRLSEDLKFLSFRVIDKK-----GRVHCMEIQLDKNYPRSPPSISADVPY----I------FN 79 (289)
Q Consensus 16 y~~l~~Ei~~igw~~l-~~id~~l~~i~l~~~D~~-----~R~H~l~i~l~~~yp~~~P~~~~dlP~----~------f~ 79 (289)
-.+|.+|+.+|.-+.. +..+.++....+.+.-.. |....++|.+|.+||..||.+...=++ . +.
T Consensus 14 ~~RL~~El~~l~~~~~~v~~~~~l~~w~~~I~GP~~tpyegg~f~~~i~fp~~YP~~PP~v~F~t~i~HPNi~~~~G~iC 93 (171)
T 1yf9_A 14 NRRREMDYMRLCNSTRKVYPSDTVAEFWVEFKGPEGTPYEDGTWMLHVQLPSDYPFKSPSIGFCNRILHPNVDERSGSVC 93 (171)
T ss_dssp CHHHHHHHHHHHSSSSCEEECSSTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCBTTBCTTTCBBC
T ss_pred HHHHHHHHHHHHhCCCCCCCCCCceEEEEEEECCCCCCccCceEEEEEEcCCCCCCCCCeEEeecCcccccCcccCCeEe
Confidence 3789999998865532 245678999999887433 578899999999999999998744321 0 00
Q ss_pred c-----ccCccccHHHHHHHH
Q 022965 80 L-----KWSRKSRLKDLLQQF 95 (289)
Q Consensus 80 l-----~w~~~s~L~~i~~qF 95 (289)
+ .|++..++..|+..+
T Consensus 94 l~iL~~~W~p~~~i~~vL~si 114 (171)
T 1yf9_A 94 LDVINQTWTPMYQLENIFDVF 114 (171)
T ss_dssp HHHHHHHCCTTCCTHHHHHTH
T ss_pred ccccccCCCCCCcHHHHHHHH
Confidence 1 588777777776654
No 115
>2nvu_C NEDD8-conjugating enzyme UBC12; multifunction macromolecular complex, ubiquitin, ATP, conformational change, thioester, switch, adenylation, protein turnover, ligase; HET: ATP; 2.80A {Homo sapiens} SCOP: d.20.1.1
Probab=92.17 E-value=1.1 Score=38.34 Aligned_cols=88 Identities=13% Similarity=0.348 Sum_probs=60.6
Q ss_pred CChhHHHHHHHHHHHhccceeeee----cCCcceEEEEEEeC----CCCEEEEEEEeCCCCCCCCCCccccCCCccc---
Q 022965 11 NSSSFSRSVYSEIEEVGWEHLVRL----SEDLKFLSFRVIDK----KGRVHCMEIQLDKNYPRSPPSISADVPYIFN--- 79 (289)
Q Consensus 11 ~~~~~y~~l~~Ei~~igw~~l~~i----d~~l~~i~l~~~D~----~~R~H~l~i~l~~~yp~~~P~~~~dlP~~f~--- 79 (289)
....--.+|.+|+.++.-..-+++ +.++....+.+--. .|....++|.+|.+||..||.+...=|+ |+
T Consensus 23 ~~~~~~~RL~kEl~~l~~~~~i~~~~p~~~nl~~W~~~igP~~tpYegg~f~~~i~fp~~YP~~PP~v~F~t~i-~HPNV 101 (180)
T 2nvu_C 23 KASAAQLRIQKDINELNLPKTCDISFSDPDDLLNFKLVICPDEGFYKSGKFVFSFKVGQGYPHDPPKVKCETMV-YHPNI 101 (180)
T ss_dssp SCCHHHHHHHHHHHTCCCCTTEEEECSSTTCTTEEEEEECCCSGGGTTBCEEEEEECCTTTTTSCCEEEECSCC-CBTTB
T ss_pred CccHHHHHHHHHHHhcCCCCCeEEEecccccccceEEEECCCCCCCCCCEEEEEEeCCCcCCCCCCcCceeccC-ccCCC
Confidence 355567999999999932222222 35688887776321 2467889999999999999998765442 11
Q ss_pred ------------cccCccccHHHHHHHHHHHH
Q 022965 80 ------------LKWSRKSRLKDLLQQFREHL 99 (289)
Q Consensus 80 ------------l~w~~~s~L~~i~~qF~~~l 99 (289)
-.|++..++..|+...+..|
T Consensus 102 ~~~G~iCl~iL~~~W~p~~~i~~vL~si~~ll 133 (180)
T 2nvu_C 102 DLEGNVALNILREDWKPVLTINSIIYGLQYLF 133 (180)
T ss_dssp CTTSBBCCGGGTTSCCTTCCHHHHHHHHHHHH
T ss_pred CCCCcEEcccccccCCCCCCHHHHHHHHHHHH
Confidence 15999888888777665554
No 116
>2y9m_A Ubiquitin-conjugating enzyme E2-21 kDa; ligase-transport protein complex, ubiquitin conjugating ENZY complex, peroxisomal protein; 2.60A {Saccharomyces cerevisiae} PDB: 2y9p_A 2y9o_A
Probab=92.11 E-value=0.93 Score=38.43 Aligned_cols=85 Identities=15% Similarity=0.119 Sum_probs=59.2
Q ss_pred HHHHHHHHHHHhcc-c---------e---ee--e--ecCCcceEEEEEEeCC-----CCEEEEEEEeCCCCCCCCCCccc
Q 022965 15 FSRSVYSEIEEVGW-E---------H---LV--R--LSEDLKFLSFRVIDKK-----GRVHCMEIQLDKNYPRSPPSISA 72 (289)
Q Consensus 15 ~y~~l~~Ei~~igw-~---------~---l~--~--id~~l~~i~l~~~D~~-----~R~H~l~i~l~~~yp~~~P~~~~ 72 (289)
--.+|.+|+.+|.- + . .+ . -+.++...+..+.-.. |....++|.+|.+||..||.+..
T Consensus 7 ~~~RL~kEl~~l~~~~~~~~~~~~p~~g~~~~~~p~~~~nl~~w~~~I~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f 86 (172)
T 2y9m_A 7 CMSRIVKEYKVILKTLASDDPIANPYRGIIESLNPIDETDLSKWEAIISGPSDTPYENHQFRILIEVPSSYPMNPPKISF 86 (172)
T ss_dssp HHHHHHHHHHHHHHHHTCCCTTTCTTTTTEEEEEESSTTCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEE
T ss_pred HHHHHHHHHHHHHhccCCcccccCCCCcceEEEecCCCCchhEEEEEEECCCCCcccCCEEEEEEECCCcCCCCCCEEEE
Confidence 34788888888764 1 1 12 1 2346888888888433 57899999999999999999876
Q ss_pred cC-----CCc-c--------c---cccCccccHHHHHHHHHHHH
Q 022965 73 DV-----PYI-F--------N---LKWSRKSRLKDLLQQFREHL 99 (289)
Q Consensus 73 dl-----P~~-f--------~---l~w~~~s~L~~i~~qF~~~l 99 (289)
.- |-. + . -.|++..+|..|+...+..|
T Consensus 87 ~t~~i~HPni~~~~G~iCl~iL~~~~W~p~~~i~~vL~si~~ll 130 (172)
T 2y9m_A 87 MQNNILHCNVKSATGEICLNILKPEEWTPVWDLLHCVHAVWRLL 130 (172)
T ss_dssp CTTSCCCTTEETTTTEECCGGGSTTTCCTTCCHHHHHHHHHHHH
T ss_pred eeCCeecCCCcCCCCEEeccccCCCCCCCcCcHHHHHHHHHHHH
Confidence 54 211 1 1 15998888888877666554
No 117
>2f4z_A Tgtwinscan_2721 - E2 domain; ubiquitin conjugating tgtwinscan_2721, structural genomics, structural genomics consortium, SGC; 2.11A {Toxoplasma gondii} SCOP: d.20.1.1
Probab=91.99 E-value=0.97 Score=39.28 Aligned_cols=86 Identities=17% Similarity=0.299 Sum_probs=59.9
Q ss_pred hHHHHHHHHHHHhcccee---------------e---eecCCcceEEEEEEeC-----CCCEEEEEEEeCCCCCCCCCCc
Q 022965 14 SFSRSVYSEIEEVGWEHL---------------V---RLSEDLKFLSFRVIDK-----KGRVHCMEIQLDKNYPRSPPSI 70 (289)
Q Consensus 14 ~~y~~l~~Ei~~igw~~l---------------~---~id~~l~~i~l~~~D~-----~~R~H~l~i~l~~~yp~~~P~~ 70 (289)
.-.++|.+|+.+|.-+.. + -.+.++....+.+.-. .|....++|.+|.+||..||.+
T Consensus 32 ~a~~RL~kEl~~l~k~~~~~~~~p~~~~~~~~gi~v~~~~~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~V 111 (193)
T 2f4z_A 32 REQARLLKELADIQQLQRAHDSEPAATHSTSHGVSAQIVGGDIHRWRGFIAGPLGTPYEGGHFTLDIVIPPDYPYNPPKM 111 (193)
T ss_dssp CHHHHHHHHHHHHHHC----------------CEEEEEETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEE
T ss_pred HHHHHHHHHHHHHHhCCCccccccccccCCCCcEEEEEcCCCcceEEEEEeCCCCCCcCCCEEEEEEECCCcCCCCCCeE
Confidence 346899999999865432 1 2355688888888743 2578899999999999999988
Q ss_pred cccCCC----c------cc---c--ccCccccHHHHHHHHHHHH
Q 022965 71 SADVPY----I------FN---L--KWSRKSRLKDLLQQFREHL 99 (289)
Q Consensus 71 ~~dlP~----~------f~---l--~w~~~s~L~~i~~qF~~~l 99 (289)
...=|+ . +. | .|++..+|..|+...+..|
T Consensus 112 ~F~T~i~HPNI~~~~G~ICL~iL~~~WsP~~ti~~vL~sI~sll 155 (193)
T 2f4z_A 112 KFVTKIWHPNISSQTGAICLDILKHEWSPALTIRTALLSIQAML 155 (193)
T ss_dssp EESSCCCBTTBCTTTCBBCCGGGTTTCCTTSCHHHHHHHHHHHH
T ss_pred EEecCCccCCCcCCCCEEECccccccCCCCCCHHHHHHHHHHHH
Confidence 654431 1 00 1 5999888887776655544
No 118
>2a4d_A Ubiquitin-conjugating enzyme E2 variant 1; alternative splicing, nuclear protein, UBL conjugation pathway,ubiquitin, ligase, structural genomics; 1.69A {Homo sapiens} SCOP: d.20.1.1 PDB: 2c2v_C 1j7d_A 1j74_A 1zgu_A
Probab=91.93 E-value=1.3 Score=37.43 Aligned_cols=85 Identities=22% Similarity=0.332 Sum_probs=59.4
Q ss_pred HHHHHHHHHHHhcccee-----eee-cC-C--cceEEEEEEeCC-----CCEEEEEEEeCCCCCCCCCCccccCCC----
Q 022965 15 FSRSVYSEIEEVGWEHL-----VRL-SE-D--LKFLSFRVIDKK-----GRVHCMEIQLDKNYPRSPPSISADVPY---- 76 (289)
Q Consensus 15 ~y~~l~~Ei~~igw~~l-----~~i-d~-~--l~~i~l~~~D~~-----~R~H~l~i~l~~~yp~~~P~~~~dlP~---- 76 (289)
--.+|.+|+.++.-+.. +.. +. + +...++.+.-.. |....++|.+|.+||..||.+...=|+
T Consensus 26 ~~~RL~kEl~~l~~~~~~g~~~~~~~~~~d~~l~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~v~F~T~i~HPN 105 (160)
T 2a4d_A 26 RNFRLLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTIYENRIYSLKIECGPKYPEAPPFVRFVTKINMNG 105 (160)
T ss_dssp HHHHHHHHHHHHHSCCTTSSEEEEESSTTCTTCCEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESBCCCCTT
T ss_pred HHHHHHHHHHHHHhCCCCCcEEEEecCCccccceeeEEEEECCCCCCccCeEEEEEEECCCcCCCCCcEEEEecCceeCC
Confidence 35799999999875421 222 33 3 788888888433 578999999999999999988654332
Q ss_pred ------cc-----c--cccCccccHHHHHHHHHHHH
Q 022965 77 ------IF-----N--LKWSRKSRLKDLLQQFREHL 99 (289)
Q Consensus 77 ------~f-----~--l~w~~~s~L~~i~~qF~~~l 99 (289)
.+ . -.|++..++..|+...+..|
T Consensus 106 V~~~~G~ICl~iL~~~~~WsP~~ti~~vL~sI~~ll 141 (160)
T 2a4d_A 106 VNSSNGVVDPRAISVLAKWQNSYSIKVVLQELRRLM 141 (160)
T ss_dssp BCTTTCBBCGGGSHHHHTCCTTCCHHHHHHHHHHHH
T ss_pred EECCCCEEehhhcCCccCCCccCcHHHHHHHHHHHH
Confidence 01 1 15988888887777655554
No 119
>2z5d_A Ubiquitin-conjugating enzyme E2 H; UBE2H, SGC, ligase, structural genomics, structural genomics consortium; 2.10A {Homo sapiens}
Probab=91.26 E-value=0.45 Score=40.95 Aligned_cols=83 Identities=18% Similarity=0.266 Sum_probs=56.2
Q ss_pred hHHHHHHHHHHHhcccee-eeecCCcceEEEEEEeC-----CCCEEEEEEEeCCCCCCCCCCccccCCC----ccc----
Q 022965 14 SFSRSVYSEIEEVGWEHL-VRLSEDLKFLSFRVIDK-----KGRVHCMEIQLDKNYPRSPPSISADVPY----IFN---- 79 (289)
Q Consensus 14 ~~y~~l~~Ei~~igw~~l-~~id~~l~~i~l~~~D~-----~~R~H~l~i~l~~~yp~~~P~~~~dlP~----~f~---- 79 (289)
.--.+|.+|+.++.-+.+ +....++....+.+.-. .|....++|.+|.+||..||.+...=|+ ...
T Consensus 25 ~a~~RL~kEl~~l~~~g~~v~~~ddl~~W~~~I~GP~~tpYegG~f~l~i~fp~~YP~~PP~V~F~t~i~HPNV~~~~G~ 104 (179)
T 2z5d_A 25 PGKRRMDTDVIKLIESKHEVTILGGLNEFVVKFYGPQGTPYEGGVWKVRVDLPDKYPFKSPSIGFMNKIFHPNIDEASGT 104 (179)
T ss_dssp HHHHHHHHHHHHHHHSSSCEEEEEETTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCBTTBCTTTCB
T ss_pred HHHHHHHHHHHhcCcCCCEEEECCCCceeEEEEECCCCCCccCCEEEEEeeCCCCCCCCCceEEEecCCccCcCCCCCCe
Confidence 356799999999842221 22334677777777642 2578899999999999999998754432 111
Q ss_pred -------cccCccccHHHHHHHHH
Q 022965 80 -------LKWSRKSRLKDLLQQFR 96 (289)
Q Consensus 80 -------l~w~~~s~L~~i~~qF~ 96 (289)
-.|++..++..|+..|.
T Consensus 105 ICL~iL~~~WsP~~ti~~iL~s~I 128 (179)
T 2z5d_A 105 VCLDVINQTWTALYDLTNIFESFL 128 (179)
T ss_dssp BCHHHHHHHCCTTCCTTHHHHTHH
T ss_pred EeccccccCCCCCCCHHHHHHHHH
Confidence 14888777777777643
No 120
>2onu_A Ubiquitin-conjugating enzyme, putative; UBC, plasmodium FAL structural genomics consortium, SGC, ligase; HET: PG4; 2.38A {Plasmodium falciparum}
Probab=90.81 E-value=0.73 Score=38.33 Aligned_cols=79 Identities=15% Similarity=0.215 Sum_probs=53.6
Q ss_pred HHHHHHHHHhccce--eeeecCCcceEEEEEEeC-----CCCEEEEEEEeCCCCCCCCCCccccCCC-cccc--------
Q 022965 17 RSVYSEIEEVGWEH--LVRLSEDLKFLSFRVIDK-----KGRVHCMEIQLDKNYPRSPPSISADVPY-IFNL-------- 80 (289)
Q Consensus 17 ~~l~~Ei~~igw~~--l~~id~~l~~i~l~~~D~-----~~R~H~l~i~l~~~yp~~~P~~~~dlP~-~f~l-------- 80 (289)
.+|.+|+.++.-+. +.-.+.++...++.+.-. .|....++|.+|.+||..||.+...=|+ ..++
T Consensus 5 ~Rl~kEl~~l~~~~~~v~~~~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPni~~~~G~iC 84 (152)
T 2onu_A 5 TRKQCDFTKLIMAGYDLELNNGSTQDFDVMFHGPNGTAYEGGIWKVHVTLPDDYPFASPSIGFMNKLLHPNVDEASGSVC 84 (152)
T ss_dssp CHHHHTHHHHHHHTCCEEEETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCCTTBCTTTCBBC
T ss_pred HHHHHHHHhcCcCCCEEEEccCccceEEEEEECCCCCcccceEEEEEEcCcccCCCCCCeEEEecCCccCcCcCcCCeEe
Confidence 46777777763222 233456788888888732 3578899999999999999998654332 0011
Q ss_pred ------ccCccccHHHHHHHH
Q 022965 81 ------KWSRKSRLKDLLQQF 95 (289)
Q Consensus 81 ------~w~~~s~L~~i~~qF 95 (289)
.|++..++..|+..+
T Consensus 85 l~il~~~W~p~~~i~~vl~~i 105 (152)
T 2onu_A 85 LDVINQTWTPLYSLVNVFEVF 105 (152)
T ss_dssp HHHHHHHCCTTCCHHHHHHTH
T ss_pred cccccccCCCCCCHHHHHHHH
Confidence 488877888777664
No 121
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=90.49 E-value=0.12 Score=37.70 Aligned_cols=49 Identities=29% Similarity=0.440 Sum_probs=36.6
Q ss_pred CcccccccccccccchhhccccCCCCCcccccCCCCCCcchhhHHHHHHhhhccCccccccccCCCCCCCcc
Q 022965 208 QQVECGICYAQFLPIDEELGAKSGGGTDYTCDNSSCSKAFHSVCLGDWLRSITTTRQSYDVLFGNCPYCSEP 279 (289)
Q Consensus 208 ~~~eC~ICy~~~l~~d~~~~~~~g~~Pd~~C~n~~C~h~FH~~CL~eWL~~l~~~r~sF~~i~g~CP~Cr~~ 279 (289)
....|.||-.. |. ...|+ .|...||..||.-.|...|.+ .=.||.|+..
T Consensus 11 ~~~~C~vC~~~------------~~--ll~Cd--~C~~~~H~~Cl~P~l~~~P~g-------~W~C~~C~~~ 59 (66)
T 2lri_C 11 PGARCGVCGDG------------TD--VLRCT--HCAAAFHWRCHFPAGTSRPGT-------GLRCRSCSGD 59 (66)
T ss_dssp TTCCCTTTSCC------------TT--CEECS--SSCCEECHHHHCTTTCCCCSS-------SCCCTTTTTC
T ss_pred CCCCcCCCCCC------------Ce--EEECC--CCCCceecccCCCccCcCCCC-------CEECccccCC
Confidence 44679999632 11 35684 699999999999888887765 3589999865
No 122
>4ddg_A Ubiquitin-conjugating enzyme E2 D2, ubiquitin THI OTUB1; inhibition, hydrolase-ligase complex; 3.30A {Homo sapiens} PDB: 4ddi_A
Probab=90.27 E-value=1 Score=43.08 Aligned_cols=83 Identities=16% Similarity=0.378 Sum_probs=59.4
Q ss_pred HHHHHHHHHHhcccee-----eeecCCcceEEEEEEeC-----CCCEEEEEEEeCCCCCCCCCCccccCCCcc-------
Q 022965 16 SRSVYSEIEEVGWEHL-----VRLSEDLKFLSFRVIDK-----KGRVHCMEIQLDKNYPRSPPSISADVPYIF------- 78 (289)
Q Consensus 16 y~~l~~Ei~~igw~~l-----~~id~~l~~i~l~~~D~-----~~R~H~l~i~l~~~yp~~~P~~~~dlP~~f------- 78 (289)
-++|.+|+.++.-+.. .-.+.++......+.-. .|....++|.+|.+||..||.+...-|. |
T Consensus 5 ~~RL~kEl~~l~~~~~~~~~~~p~~~nl~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i-~HPnv~~~ 83 (399)
T 4ddg_A 5 LKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRI-YHPNINSN 83 (399)
T ss_dssp HHHHHHHHHHHHHSCCSSEEEEEETTEEEEEEEEEECCTTSSSTTCEEEEEEECCSSTTTSCCEEEESSCC-CCTTBCTT
T ss_pred HHHHHHHHHHHHhCCCCCEEEEEcCCcceEEEEEEECCCCCCCCCCEEEEEEECCcccCCCCcEEEeeccc-cccccCCC
Confidence 4689999999865433 12355788888888733 3578889999999999999998654442 1
Q ss_pred --------ccccCccccHHHHHHHHHHHH
Q 022965 79 --------NLKWSRKSRLKDLLQQFREHL 99 (289)
Q Consensus 79 --------~l~w~~~s~L~~i~~qF~~~l 99 (289)
.=.|+|..++..|+...+..|
T Consensus 84 G~iCl~il~~~W~p~~~i~~vL~~i~~ll 112 (399)
T 4ddg_A 84 GSISLDILRSQWSPALTISKVLLSICSLL 112 (399)
T ss_dssp CBBCCGGGTTSCCTTCCHHHHHHHHHHHH
T ss_pred CeEeCcccccCCCccccHHHHHHHHHHHH
Confidence 116999888887776555444
No 123
>2hlw_A Ubiquitin-conjugating enzyme E2 variant 1; ubiquitin-conjugating enzyme variant, UBC13, HUBC13, polyubiquitination, ligase, signaling protein; NMR {Homo sapiens}
Probab=90.17 E-value=1.7 Score=36.92 Aligned_cols=85 Identities=22% Similarity=0.336 Sum_probs=59.0
Q ss_pred HHHHHHHHHHHhcccee-----eee-cC-C--cceEEEEEEeCC-----CCEEEEEEEeCCCCCCCCCCccccCCC----
Q 022965 15 FSRSVYSEIEEVGWEHL-----VRL-SE-D--LKFLSFRVIDKK-----GRVHCMEIQLDKNYPRSPPSISADVPY---- 76 (289)
Q Consensus 15 ~y~~l~~Ei~~igw~~l-----~~i-d~-~--l~~i~l~~~D~~-----~R~H~l~i~l~~~yp~~~P~~~~dlP~---- 76 (289)
--.+|.+|+.++.-+.. +.+ +. + +...+..+.-.. |....++|.+|.+||..||.+...=|+
T Consensus 36 ~~~RL~kEl~~l~~~~~~g~~~~~~~~~~d~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~v~F~T~i~HPN 115 (170)
T 2hlw_A 36 RNFRLLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTIYENRIYSLKIECGPKYPEAPPFVRFVTKINMNG 115 (170)
T ss_dssp HHHHHHHHHHHHHHCCGGGCEEEEESSTTCSSCCBEEEEECCCSSSTTSSCCBCEEEECCSSCTTSCCEEEECBCCCCSS
T ss_pred HHHHHHHHHHHHHhCCCCCcEEEEecCcccccceeeEEEEeCCCCCCcCCcEEEEEEECCCCCCCCCCeeEEecccccCC
Confidence 35899999999865421 222 43 3 788888887432 567889999999999999988654332
Q ss_pred ------c-----cc--cccCccccHHHHHHHHHHHH
Q 022965 77 ------I-----FN--LKWSRKSRLKDLLQQFREHL 99 (289)
Q Consensus 77 ------~-----f~--l~w~~~s~L~~i~~qF~~~l 99 (289)
. +. =.|++..++..|+...+..|
T Consensus 116 V~~~~G~ICl~iL~~~~~WsP~~ti~~vL~sI~~ll 151 (170)
T 2hlw_A 116 VNSSNGVVDPRAISVLAKWQNSYSIKVVLQELRRLM 151 (170)
T ss_dssp BCSSSCBBCTTTCHHHHTCCSSCCHHHHHHHHHHHH
T ss_pred EeCCCCEEEhhhcCCCCCCCccCcHHHHHHHHHHHH
Confidence 0 11 15998888888777665554
No 124
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=90.09 E-value=0.17 Score=40.25 Aligned_cols=32 Identities=28% Similarity=0.424 Sum_probs=27.1
Q ss_pred CCCCCCcchhhHHHHHHhhhccCccccccccCCCCCCCcccc
Q 022965 240 NSSCSKAFHSVCLGDWLRSITTTRQSYDVLFGNCPYCSEPVA 281 (289)
Q Consensus 240 n~~C~h~FH~~CL~eWL~~l~~~r~sF~~i~g~CP~Cr~~i~ 281 (289)
...|+|.|=..|...|.+.- .+.||.|+++|.
T Consensus 17 mIPCkHvFCydCa~~~~~~~----------~k~Cp~C~~~V~ 48 (101)
T 3vk6_A 17 MIPCKHVFCYDCAILHEKKG----------DKMCPGCSDPVQ 48 (101)
T ss_dssp EETTCCEEEHHHHHHHHHTT----------CCBCTTTCCBCS
T ss_pred eccccccHHHHHHHHHHhcc----------CCCCcCcCCeee
Confidence 36899999999999998641 479999999874
No 125
>1tte_A Ubiquitin-conjugating enzyme E2-24 kDa; UBC1, ubiquitin-dependent degradation, ligase; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1 d.20.1.1
Probab=89.60 E-value=0.68 Score=40.98 Aligned_cols=83 Identities=24% Similarity=0.407 Sum_probs=55.2
Q ss_pred HHHHHHHHHhcccee--ee---ecC-CcceEEEEEEeC-----CCCEEEEEEEeCCCCCCCCCCccccCCC--c------
Q 022965 17 RSVYSEIEEVGWEHL--VR---LSE-DLKFLSFRVIDK-----KGRVHCMEIQLDKNYPRSPPSISADVPY--I------ 77 (289)
Q Consensus 17 ~~l~~Ei~~igw~~l--~~---id~-~l~~i~l~~~D~-----~~R~H~l~i~l~~~yp~~~P~~~~dlP~--~------ 77 (289)
.+|.+|+.++.-+.. ++ .+. ++...+..+.-. .|....++|.+|.+||..||.+...=|+ +
T Consensus 5 ~RL~kEl~~l~~~~~~gi~~~p~~~~~l~~w~~~I~GP~~TpYegG~f~l~i~fP~~YP~~PP~V~F~T~i~HPNI~~~~ 84 (215)
T 1tte_A 5 KRIMKEIQAVKDDPAAHITLEFVSESDIHHLKGTFLGPPGTPYEGGKFVVDIEVPMEYPFKPPKMQFDTKVYHPNISSVT 84 (215)
T ss_dssp HHHHHHHHHHHTTTCTTCEECCCSSSSCCEEEEECCEEEEETTEEECCEEEEECCSCSSSCCCEEEETTTCCCSSSCSSS
T ss_pred HHHHHHHHHHHhCCCCCEEEEECCCccccccEEEEeCCCCCCcCCCEEEEEEeCCccCCCCCCcccccCCCccCcCcCCC
Confidence 689999999865433 22 233 466777666532 2456789999999999999988654332 0
Q ss_pred -------cccccCccccHHHHHHHHHHHH
Q 022965 78 -------FNLKWSRKSRLKDLLQQFREHL 99 (289)
Q Consensus 78 -------f~l~w~~~s~L~~i~~qF~~~l 99 (289)
+.=.|+|..++..|+...+..|
T Consensus 85 G~ICL~iL~~~WsP~~ti~~VL~sI~sLL 113 (215)
T 1tte_A 85 GAICLDILRNAWSPVITLKSALISLQALL 113 (215)
T ss_dssp SCCCSSTTTCCSCTTCCHHHHHHHHHHHH
T ss_pred CEEECccCCCCCCCcCcHHHHHHHHHHHH
Confidence 0115999888888777655554
No 126
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=88.92 E-value=0.41 Score=37.06 Aligned_cols=34 Identities=24% Similarity=0.548 Sum_probs=23.6
Q ss_pred CcccccccccccccchhhccccCCCCCcccccCCCCCCcchhhHHHHH
Q 022965 208 QQVECGICYAQFLPIDEELGAKSGGGTDYTCDNSSCSKAFHSVCLGDW 255 (289)
Q Consensus 208 ~~~eC~ICy~~~l~~d~~~~~~~g~~Pd~~C~n~~C~h~FH~~CL~eW 255 (289)
.+..|.||-..-. +.-+| | --|++.||..||.+=
T Consensus 14 ~D~~C~VC~~~t~---------~~l~p---C--RvC~RvfH~~CL~r~ 47 (89)
T 1wil_A 14 NDEMCDVCEVWTA---------ESLFP---C--RVCTRVFHDGCLRRM 47 (89)
T ss_dssp CSCCCTTTCCCCS---------SCCSS---C--SSSSSCCCHHHHHHH
T ss_pred CCcccCccccccc---------cceec---c--ccccccccHhhcccc
Confidence 4568999986532 22344 4 346899999999884
No 127
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=85.30 E-value=0.33 Score=34.54 Aligned_cols=52 Identities=29% Similarity=0.653 Sum_probs=36.0
Q ss_pred CCCCcccccccccccccchhhccccCCCCCcccccCCCCCCcchhhHHHHHHhhhccCccccccccCCCCCCCcc
Q 022965 205 NNYQQVECGICYAQFLPIDEELGAKSGGGTDYTCDNSSCSKAFHSVCLGDWLRSITTTRQSYDVLFGNCPYCSEP 279 (289)
Q Consensus 205 ~~~~~~eC~ICy~~~l~~d~~~~~~~g~~Pd~~C~n~~C~h~FH~~CL~eWL~~l~~~r~sF~~i~g~CP~Cr~~ 279 (289)
+++....|.||... | --..|+ .|...||..||..=|...|.. .=.||.|+..
T Consensus 7 ~~~~~~~C~vC~~~------------g--~ll~CD--~C~~~fH~~Cl~p~l~~~p~g-------~W~C~~C~~~ 58 (61)
T 2l5u_A 7 ETDHQDYCEVCQQG------------G--EIILCD--TCPRAYHMVCLDPDMEKAPEG-------KWSCPHCEKE 58 (61)
T ss_dssp SSCCCSSCTTTSCC------------S--SEEECS--SSSCEEEHHHHCTTCCSCCCS-------SCCCTTGGGG
T ss_pred cCCCCCCCccCCCC------------C--cEEECC--CCChhhhhhccCCCCCCCCCC-------ceECcccccc
Confidence 34566789999752 1 124685 699999999997655554543 4579999764
No 128
>2ebk_A RWD domain-containing protein 3; alpha+beta sandwich fold, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=85.06 E-value=6.1 Score=31.13 Aligned_cols=60 Identities=20% Similarity=0.245 Sum_probs=36.9
Q ss_pred hHHHHHHHHHHHhc---cc--eeeeec---CCcceEEEEEEeCC----CCEEEEEEEeCCCCCCCCCCcccc
Q 022965 14 SFSRSVYSEIEEVG---WE--HLVRLS---EDLKFLSFRVIDKK----GRVHCMEIQLDKNYPRSPPSISAD 73 (289)
Q Consensus 14 ~~y~~l~~Ei~~ig---w~--~l~~id---~~l~~i~l~~~D~~----~R~H~l~i~l~~~yp~~~P~~~~d 73 (289)
.+......||++|. =+ .+..++ .+...+++++.... .-.-.|.|.+|.+||..+|.+.+.
T Consensus 7 ~~~e~q~~EleaL~SIy~d~~e~~~~~~~~~~~~~f~i~l~~~~~~~~~~~~~L~~~~p~~YP~~~P~i~l~ 78 (128)
T 2ebk_A 7 GMAEPVQEELSVLAAIFCRPHEWEVLSRSETDGTVFRIHTKAEGFMDADIPLELVFHLPVNYPSCLPGISIN 78 (128)
T ss_dssp CSCHHHHHHHHHHHHHHCCTTTCCCSEECSSSCEEEEEEEECCTTTTCCCEEEEEEEECSSTTSSCCCCCCC
T ss_pred hHHHHHHHHHHHHHHHcCCCCceEEecCCCCCCCeEEEEecCCCCCCCCeEEEEEEECCCCCCCCCCeEEEE
Confidence 34455677887662 11 222222 22356777776332 234568889999999999988766
No 129
>2ebm_A RWD domain-containing protein 1; alpha+beta sandwich fold, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=82.77 E-value=3.2 Score=32.67 Aligned_cols=60 Identities=15% Similarity=0.251 Sum_probs=39.4
Q ss_pred hHHHHHHHHHHHhc---cceeeeecCCcceEEEEEEeCC-----CCEEEEEEEeCCCCCCCCCCcccc
Q 022965 14 SFSRSVYSEIEEVG---WEHLVRLSEDLKFLSFRVIDKK-----GRVHCMEIQLDKNYPRSPPSISAD 73 (289)
Q Consensus 14 ~~y~~l~~Ei~~ig---w~~l~~id~~l~~i~l~~~D~~-----~R~H~l~i~l~~~yp~~~P~~~~d 73 (289)
.+-.....||++|. =+.+..++..-..+++++.... .-.-.|.|.+|.+||.++|.+..-
T Consensus 10 ~~~e~q~~EleaL~sIy~d~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~L~v~~p~~YP~~~P~i~l~ 77 (128)
T 2ebm_A 10 DYGEEQRNELEALESIYPDSFTVLSENPPSFTITVTSEAGENDETVQTTLKFTYSEKYPDEAPLYEIF 77 (128)
T ss_dssp CHHHHHHHHHHHHHHHCSSSEEECCSSSCEEEECCBCCCCTTSCCCBEEEEEECCSSTTTSCCEEEEE
T ss_pred ChHHHHHHHHHHHHHHccCceEEccCCCCEEEEEEecCCCCCcCceeEEEEEEeCCCCCCCCceEEEE
Confidence 46677788887762 1444445544466677765321 224468999999999999987754
No 130
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=81.93 E-value=0.24 Score=43.13 Aligned_cols=54 Identities=24% Similarity=0.516 Sum_probs=38.0
Q ss_pred CCCCcccccccccccccchhhccccCCCCCcccccCCCCCCcchhhHHHHHHhhhccCccccccccCCCCCCCcccc
Q 022965 205 NNYQQVECGICYAQFLPIDEELGAKSGGGTDYTCDNSSCSKAFHSVCLGDWLRSITTTRQSYDVLFGNCPYCSEPVA 281 (289)
Q Consensus 205 ~~~~~~eC~ICy~~~l~~d~~~~~~~g~~Pd~~C~n~~C~h~FH~~CL~eWL~~l~~~r~sF~~i~g~CP~Cr~~i~ 281 (289)
+++....|++|-.. |. -..|+ .|...||..||..-|...|.+ .=.||.|+..-.
T Consensus 3 ~d~~~~~C~~C~~~------------g~--ll~Cd--~C~~~~H~~Cl~p~l~~~p~~-------~W~C~~C~~~~~ 56 (207)
T 3u5n_A 3 DDPNEDWCAVCQNG------------GD--LLCCE--KCPKVFHLTCHVPTLLSFPSG-------DWICTFCRDIGK 56 (207)
T ss_dssp CCSSCSSBTTTCCC------------EE--EEECS--SSSCEECTTTSSSCCSSCCSS-------CCCCTTTSCSSS
T ss_pred CCCCCCCCCCCCCC------------Cc--eEEcC--CCCCccCCccCCCCCCCCCCC-------CEEeCceeCccc
Confidence 34456679999742 11 24684 499999999998777766654 358999998543
No 131
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=80.08 E-value=0.35 Score=34.40 Aligned_cols=51 Identities=29% Similarity=0.631 Sum_probs=34.7
Q ss_pred CCCcccccccccccccchhhccccCCCCCcccccCCCCCCcchhhHHHHHHhhhccCccccccccCCCCCCCcc
Q 022965 206 NYQQVECGICYAQFLPIDEELGAKSGGGTDYTCDNSSCSKAFHSVCLGDWLRSITTTRQSYDVLFGNCPYCSEP 279 (289)
Q Consensus 206 ~~~~~eC~ICy~~~l~~d~~~~~~~g~~Pd~~C~n~~C~h~FH~~CL~eWL~~l~~~r~sF~~i~g~CP~Cr~~ 279 (289)
+.....|.||... |. -..|+ .|...||..||..=|...|.. .=.||.|+.+
T Consensus 6 d~~~~~C~vC~~~------------g~--ll~Cd--~C~~~fH~~Cl~ppl~~~p~g-------~W~C~~C~~~ 56 (61)
T 1mm2_A 6 DHHMEFCRVCKDG------------GE--LLCCD--TCPSSYHIHCLNPPLPEIPNG-------EWLCPRCTCP 56 (61)
T ss_dssp CSSCSSCTTTCCC------------SS--CBCCS--SSCCCBCSSSSSSCCSSCCSS-------CCCCTTTTTT
T ss_pred cCCCCcCCCCCCC------------CC--EEEcC--CCCHHHcccccCCCcCcCCCC-------ccCChhhcCc
Confidence 4456679999752 11 24685 599999999997655554433 3469999875
No 132
>3obq_A Tumor susceptibility gene 101 protein; protein transprot, ubiquitin binding, protein transport; 1.40A {Homo sapiens} SCOP: d.20.1.2 PDB: 3obs_A 3obu_A 3obx_A 3p9g_A* 3p9h_A* 2f0r_A 1kpp_A 1kpq_A 1m4p_A 1m4q_A 1s1q_A
Probab=78.86 E-value=4.4 Score=33.82 Aligned_cols=51 Identities=22% Similarity=0.341 Sum_probs=35.8
Q ss_pred CCCEEE--EEEEeCCCCCCCCCCccccC-------CCcccc------------ccCc-cccHHHHHHHHHHHHH
Q 022965 49 KGRVHC--MEIQLDKNYPRSPPSISADV-------PYIFNL------------KWSR-KSRLKDLLQQFREHLE 100 (289)
Q Consensus 49 ~~R~H~--l~i~l~~~yp~~~P~~~~dl-------P~~f~l------------~w~~-~s~L~~i~~qF~~~le 100 (289)
+|..+. |.|-++.+||..||.|.+.- +.+ .+ +|++ +++|.++++..+.++.
T Consensus 65 ~g~~y~iPi~Iwlp~~YP~~pP~vfv~pt~~m~I~~~~-~Vd~~G~i~lpyL~~W~~~~snL~~ll~~l~~~F~ 137 (146)
T 3obq_A 65 RGNTYNIPICLWLLDTYPYNPPICFVKPTSSMTIKTGK-HVDANGKIYLPYLHEWKHPQSDLLGLIQVMIVVFG 137 (146)
T ss_dssp SSCEEEEEEEEECCTTTTTSCCEEEECCCTTEEECCBT-TBCTTCBBCCHHHHTCCTTTCCHHHHHHHHHHHHH
T ss_pred cCccccceEEEEeCccCCCCCCEEEEeCCCCCEECCCC-CCCCCCCEecccccccCCCCCCHHHHHHHHHHHHh
Confidence 445555 58889999999999998763 111 11 6986 6788888877666553
No 133
>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A*
Probab=78.53 E-value=0.69 Score=36.84 Aligned_cols=51 Identities=27% Similarity=0.543 Sum_probs=35.0
Q ss_pred CCCCcccccccccccccchhhccccCCCCCcccccCCCCCCcchhhHHHHHHhhhccCccccccccCCCCCCCc
Q 022965 205 NNYQQVECGICYAQFLPIDEELGAKSGGGTDYTCDNSSCSKAFHSVCLGDWLRSITTTRQSYDVLFGNCPYCSE 278 (289)
Q Consensus 205 ~~~~~~eC~ICy~~~l~~d~~~~~~~g~~Pd~~C~n~~C~h~FH~~CL~eWL~~l~~~r~sF~~i~g~CP~Cr~ 278 (289)
+.+.+..|.+|.+. | .-..|++..|-..||..||. |...|.+ .=.||.|.-
T Consensus 11 ~~~~~~~C~~C~~~------------G--~ll~CD~~~Cp~~fH~~Cl~--L~~~P~g-------~W~Cp~c~C 61 (107)
T 4gne_A 11 KQMHEDYCFQCGDG------------G--ELVMCDKKDCPKAYHLLCLN--LTQPPYG-------KWECPWHQC 61 (107)
T ss_dssp CCSSCSSCTTTCCC------------S--EEEECCSTTCCCEECTGGGT--CSSCCSS-------CCCCGGGBC
T ss_pred cCCCCCCCCcCCCC------------C--cEeEECCCCCCcccccccCc--CCcCCCC-------CEECCCCCC
Confidence 34566779999842 1 13468888899999999997 6665543 235887653
No 134
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens}
Probab=78.17 E-value=0.14 Score=36.14 Aligned_cols=52 Identities=29% Similarity=0.699 Sum_probs=35.7
Q ss_pred CcccccccccccccchhhccccCCCCCcccccCCCCCCcchhhHHHHHHhhhccCccccccccCCCCCCCccccc
Q 022965 208 QQVECGICYAQFLPIDEELGAKSGGGTDYTCDNSSCSKAFHSVCLGDWLRSITTTRQSYDVLFGNCPYCSEPVAV 282 (289)
Q Consensus 208 ~~~eC~ICy~~~l~~d~~~~~~~g~~Pd~~C~n~~C~h~FH~~CL~eWL~~l~~~r~sF~~i~g~CP~Cr~~i~~ 282 (289)
.+..|.||... | .-..|+ .|...||..||..=|...|.+ .=.||.|+....-
T Consensus 4 ~~~~C~vC~~~------------g--~ll~Cd--~C~~~fH~~Cl~ppl~~~p~g-------~W~C~~C~~~~~~ 55 (60)
T 2puy_A 4 HEDFCSVCRKS------------G--QLLMCD--TCSRVYHLDCLDPPLKTIPKG-------MWICPRCQDQMLK 55 (60)
T ss_dssp CCSSCTTTCCC------------S--SCEECS--SSSCEECGGGSSSCCSSCCCS-------CCCCHHHHHHHHH
T ss_pred CCCCCcCCCCC------------C--cEEEcC--CCCcCEECCcCCCCcCCCCCC-------ceEChhccChhhc
Confidence 45679999853 1 134685 799999999997655555533 3469999876543
No 135
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=77.22 E-value=0.39 Score=35.10 Aligned_cols=57 Identities=25% Similarity=0.447 Sum_probs=34.6
Q ss_pred cCCCCcccccccccccccchhhccccCCCCCcccccCCCCCCcchhhHHHHHHhhhccCccccccccCCCCCCCccc
Q 022965 204 ENNYQQVECGICYAQFLPIDEELGAKSGGGTDYTCDNSSCSKAFHSVCLGDWLRSITTTRQSYDVLFGNCPYCSEPV 280 (289)
Q Consensus 204 ~~~~~~~eC~ICy~~~l~~d~~~~~~~g~~Pd~~C~n~~C~h~FH~~CL~eWL~~l~~~r~sF~~i~g~CP~Cr~~i 280 (289)
+.++....|.||-... ++. .-..|+ .|..-||..||.--+...+. ..-.||.|+..+
T Consensus 13 ~~~~~~~~C~~C~~~~----------~~~-~mi~CD--~C~~wfH~~Cv~~~~~~~~~-------~~w~C~~C~~~~ 69 (75)
T 2k16_A 13 EWGNQIWICPGCNKPD----------DGS-PMIGCD--DCDDWYHWPCVGIMAAPPEE-------MQWFCPKCANKI 69 (75)
T ss_dssp SSSCEEECBTTTTBCC----------SSC-CEEECS--SSSSEEEHHHHTCSSCCCSS-------SCCCCTTTHHHH
T ss_pred ccCCCCcCCCCCCCCC----------CCC-CEEEcC--CCCcccccccCCCCccCCCC-------CCEEChhccCch
Confidence 3344556799997652 111 234686 59999999999532221111 145799998764
No 136
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Probab=76.47 E-value=0.47 Score=40.34 Aligned_cols=51 Identities=24% Similarity=0.550 Sum_probs=36.0
Q ss_pred CcccccccccccccchhhccccCCCCCcccccCCCCCCcchhhHHHHHHhhhccCccccccccCCCCCCCcccc
Q 022965 208 QQVECGICYAQFLPIDEELGAKSGGGTDYTCDNSSCSKAFHSVCLGDWLRSITTTRQSYDVLFGNCPYCSEPVA 281 (289)
Q Consensus 208 ~~~eC~ICy~~~l~~d~~~~~~~g~~Pd~~C~n~~C~h~FH~~CL~eWL~~l~~~r~sF~~i~g~CP~Cr~~i~ 281 (289)
.+..|.+|-.. |. -..|+ .|...||..|+..-|.+.|.+ .=.||.|+....
T Consensus 3 ~~~~C~~C~~~------------g~--ll~Cd--~C~~~~H~~C~~p~l~~~p~~-------~W~C~~C~~~~~ 53 (184)
T 3o36_A 3 NEDWCAVCQNG------------GE--LLCCE--KCPKVFHLSCHVPTLTNFPSG-------EWICTFCRDLSK 53 (184)
T ss_dssp SCSSCTTTCCC------------SS--CEECS--SSSCEECTTTSSSCCSSCCSS-------CCCCTTTSCSSS
T ss_pred CCCccccCCCC------------Ce--eeecC--CCCcccCccccCCCCCCCCCC-------CEECccccCccc
Confidence 34569999732 22 24684 599999999997777666544 357999998654
No 137
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A*
Probab=75.97 E-value=1.4 Score=31.77 Aligned_cols=36 Identities=31% Similarity=0.691 Sum_probs=24.3
Q ss_pred CCCcccccccccccccchhhccccCCCCCcccccCCCCCCcchhhHH
Q 022965 206 NYQQVECGICYAQFLPIDEELGAKSGGGTDYTCDNSSCSKAFHSVCL 252 (289)
Q Consensus 206 ~~~~~eC~ICy~~~l~~d~~~~~~~g~~Pd~~C~n~~C~h~FH~~CL 252 (289)
++....|++|...+.+ ...-..|++ .|..-||..|+
T Consensus 5 ~~~~~~C~~C~~p~~~----------~~~mI~CD~-~C~~WfH~~Cv 40 (65)
T 2vpb_A 5 SDPVYPCGICTNEVND----------DQDAILCEA-SCQKWFHRICT 40 (65)
T ss_dssp ----CBCTTTCSBCCT----------TSCEEEBTT-TTCCEEEHHHH
T ss_pred CCCcCcCccCCCccCC----------CCCeEeccc-CccccCchhcc
Confidence 4456689999987631 113456874 89999999998
No 138
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=75.82 E-value=0.69 Score=36.18 Aligned_cols=38 Identities=21% Similarity=0.613 Sum_probs=26.3
Q ss_pred CcccccccccccccchhhccccCCCCCcccccCCCCCCcchhhHHHHHHhh
Q 022965 208 QQVECGICYAQFLPIDEELGAKSGGGTDYTCDNSSCSKAFHSVCLGDWLRS 258 (289)
Q Consensus 208 ~~~eC~ICy~~~l~~d~~~~~~~g~~Pd~~C~n~~C~h~FH~~CL~eWL~~ 258 (289)
.+..|.||...- + ...-..| ..|++.||..||...+..
T Consensus 6 ~~~~C~~C~~~g---~--------~~~ll~C--~~C~~~~H~~Cl~~~~~~ 43 (111)
T 2ysm_A 6 SGANCAVCDSPG---D--------LLDQFFC--TTCGQHYHGMCLDIAVTP 43 (111)
T ss_dssp CCSCBTTTCCCC---C--------TTTSEEC--SSSCCEECTTTTTCCCCT
T ss_pred CCCCCcCCCCCC---C--------CcCCeEC--CCCCCCcChHHhCCcccc
Confidence 456799998741 1 0123568 689999999999876544
No 139
>2yz0_A Serine/threonine-protein kinase GCN2; A-B-B-B-B-A-A, amino acid starvation signal response, EIF2alpha kinase, transferase; NMR {Saccharomyces cerevisiae}
Probab=74.77 E-value=12 Score=29.75 Aligned_cols=60 Identities=12% Similarity=0.261 Sum_probs=37.4
Q ss_pred hHHHHHHHHHHHhc---cceeeeecC--------CcceEEEEEEeCC----CCEEEEEEEeCCCCCCCCCCcccc
Q 022965 14 SFSRSVYSEIEEVG---WEHLVRLSE--------DLKFLSFRVIDKK----GRVHCMEIQLDKNYPRSPPSISAD 73 (289)
Q Consensus 14 ~~y~~l~~Ei~~ig---w~~l~~id~--------~l~~i~l~~~D~~----~R~H~l~i~l~~~yp~~~P~~~~d 73 (289)
.|-..-..||++|. =+.+..++. .-..+++++.... .-.-.|.|.+|.+||.++|.+...
T Consensus 10 ~~~e~q~~EleaL~SIY~d~~~~~~~~~~~~~~~~~~~f~I~l~~~~~~~~~~~~~L~~~~p~~YP~~~P~i~l~ 84 (138)
T 2yz0_A 10 QYYEIQCNELEAIRSIYMDDFTDLTKRKSSWDKQPQIIFEITLRSVDKEPVESSITLHFAMTPMYPYTAPEIEFK 84 (138)
T ss_dssp HHHHHHHHHHHHHHTTSSSSEECCSTTSSSSCSSCCSCEEEEEECSSCSSCCCEEEEEEECCSSTTSSCCEEEEE
T ss_pred chHHHHHHHHHHHHHHChhhheecccccccccCCCCcEEEEEEecCCCCCCceEEEEEEECCCCCCCCCCeEEEe
Confidence 45555677887663 133333443 2456777776322 234467888899999999988764
No 140
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=74.53 E-value=1.2 Score=30.01 Aligned_cols=49 Identities=31% Similarity=0.631 Sum_probs=30.9
Q ss_pred cccccccccccchhhccccCCCCCcccccCCCCCCcchhhHHHHHHhhhccCccccccccCCCCCCCcc
Q 022965 211 ECGICYAQFLPIDEELGAKSGGGTDYTCDNSSCSKAFHSVCLGDWLRSITTTRQSYDVLFGNCPYCSEP 279 (289)
Q Consensus 211 eC~ICy~~~l~~d~~~~~~~g~~Pd~~C~n~~C~h~FH~~CL~eWL~~l~~~r~sF~~i~g~CP~Cr~~ 279 (289)
.|.||...-. .+ .-..|+ .|...||..||..=|...|.. .=.||.|+..
T Consensus 2 ~C~vC~~~~~---------~~--~ll~Cd--~C~~~~H~~Cl~p~l~~~P~g-------~W~C~~C~~~ 50 (51)
T 1f62_A 2 RCKVCRKKGE---------DD--KLILCD--ECNKAFHLFCLRPALYEVPDG-------EWQCPACQPA 50 (51)
T ss_dssp CCTTTCCSSC---------CS--CCEECT--TTCCEECHHHHCTTCCSCCSS-------CCSCTTTSCC
T ss_pred CCCCCCCCCC---------CC--CEEECC--CCChhhCcccCCCCcCCCCCC-------cEECcCcccc
Confidence 5888876411 11 234685 699999999996534444432 3469999753
No 141
>2day_A Ring finger protein 25; ligase, metal-binding, UB1 conjugation, UB1 conjugation pathway, RWD domain, alpha+beta sandwich fold, structural genomics; NMR {Homo sapiens} SCOP: d.20.1.3 PDB: 2dmf_A
Probab=73.73 E-value=11 Score=29.53 Aligned_cols=55 Identities=18% Similarity=0.223 Sum_probs=33.2
Q ss_pred HHHHHHHhc---cceeeeecC----CcceEEEEEEeC----C---CCEEEEEEEeCCCCCCCCCCcccc
Q 022965 19 VYSEIEEVG---WEHLVRLSE----DLKFLSFRVIDK----K---GRVHCMEIQLDKNYPRSPPSISAD 73 (289)
Q Consensus 19 l~~Ei~~ig---w~~l~~id~----~l~~i~l~~~D~----~---~R~H~l~i~l~~~yp~~~P~~~~d 73 (289)
...||++|. =+.+..++. .-..+++++.-. . .-.-.|.|.+|.+||..+|.+...
T Consensus 13 ~~~EleaL~SIY~de~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~~L~~~~p~~YP~~~P~i~~~ 81 (128)
T 2day_A 13 LPSEVEVLESIYLDELQVIKGNGRTSPWEIYITLHPATAEDQDSQYVCFTLVLQVPAEYPHEVPQISIR 81 (128)
T ss_dssp HHHHHHHHHHHSTTTEEEECCTTSSCCEEEEEEECCSCCSSSSCCCCEEEEEEEECSSTTSSCCEEEEE
T ss_pred HHHHHHHHHHHCCCceEEecCCCCCCCeEEEEEEecCCCCCccccceeEEEEEEcCCCCCCCCCCeEEE
Confidence 456665542 134444442 345677777411 1 124457888999999998887754
No 142
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=73.42 E-value=1.3 Score=34.12 Aligned_cols=58 Identities=21% Similarity=0.401 Sum_probs=40.0
Q ss_pred CCCCcccccccccccccchhhccccCCCCCcccccCCCCCCcchhhHHHHHHhhhccCccccccccCCCCCCCccccccc
Q 022965 205 NNYQQVECGICYAQFLPIDEELGAKSGGGTDYTCDNSSCSKAFHSVCLGDWLRSITTTRQSYDVLFGNCPYCSEPVAVKI 284 (289)
Q Consensus 205 ~~~~~~eC~ICy~~~l~~d~~~~~~~g~~Pd~~C~n~~C~h~FH~~CL~eWL~~l~~~r~sF~~i~g~CP~Cr~~i~~~~ 284 (289)
.++....|.+|... |. -..|+ .|...||..||..=|...|.+ .=.||.|+..-.+|.
T Consensus 21 ~d~n~~~C~vC~~~------------g~--LL~CD--~C~~~fH~~Cl~PpL~~~P~g-------~W~C~~C~~~~~~ke 77 (88)
T 1fp0_A 21 LDDSATICRVCQKP------------GD--LVMCN--QCEFCFHLDCHLPALQDVPGE-------EWSCSLCHVLPDLKE 77 (88)
T ss_dssp SSSSSSCCSSSCSS------------SC--CEECT--TSSCEECTTSSSTTCCCCCSS-------SCCCCSCCCCCSSCC
T ss_pred cCCCCCcCcCcCCC------------CC--EEECC--CCCCceecccCCCCCCCCcCC-------CcCCccccCCCccch
Confidence 34456689999853 11 24684 799999999997655555543 357999997655554
Q ss_pred c
Q 022965 285 S 285 (289)
Q Consensus 285 ~ 285 (289)
+
T Consensus 78 ~ 78 (88)
T 1fp0_A 78 E 78 (88)
T ss_dssp S
T ss_pred h
Confidence 4
No 143
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=73.30 E-value=0.29 Score=34.09 Aligned_cols=50 Identities=30% Similarity=0.717 Sum_probs=33.5
Q ss_pred CCCcccccccccccccchhhccccCCCCCcccccCCCCCCcchhhHHHHHHhhhccCccccccccCCCCCCCc
Q 022965 206 NYQQVECGICYAQFLPIDEELGAKSGGGTDYTCDNSSCSKAFHSVCLGDWLRSITTTRQSYDVLFGNCPYCSE 278 (289)
Q Consensus 206 ~~~~~eC~ICy~~~l~~d~~~~~~~g~~Pd~~C~n~~C~h~FH~~CL~eWL~~l~~~r~sF~~i~g~CP~Cr~ 278 (289)
+..+..|.||... | .-..|+ .|...||..||..=|...|.. .=.||.|.+
T Consensus 6 ~~~~~~C~vC~~~------------g--~ll~Cd--~C~~~~H~~Cl~ppl~~~p~g-------~W~C~~C~~ 55 (56)
T 2yql_A 6 SGHEDFCSVCRKS------------G--QLLMCD--TCSRVYHLDCLDPPLKTIPKG-------MWICPRCQD 55 (56)
T ss_dssp CSSCCSCSSSCCS------------S--CCEECS--SSSCEECSSSSSSCCCSCCCS-------SCCCHHHHC
T ss_pred CCCCCCCccCCCC------------C--eEEEcC--CCCcceECccCCCCcCCCCCC-------ceEChhhhC
Confidence 3456679999863 1 134685 799999999997655554432 245888864
No 144
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A
Probab=71.93 E-value=3 Score=30.53 Aligned_cols=37 Identities=38% Similarity=0.724 Sum_probs=27.0
Q ss_pred cccccCCCCC-CcchhhHHHHHHhhhccCccccccccCCCCCCCccc
Q 022965 235 DYTCDNSSCS-KAFHSVCLGDWLRSITTTRQSYDVLFGNCPYCSEPV 280 (289)
Q Consensus 235 d~~C~n~~C~-h~FH~~CL~eWL~~l~~~r~sF~~i~g~CP~Cr~~i 280 (289)
-.-|++..|. .-||..||- |...|.. .=.||.|+...
T Consensus 29 MI~CD~~~C~~~wfH~~Cvg--l~~~p~g-------~w~Cp~C~~~~ 66 (71)
T 1wen_A 29 MIGCDNPDCSIEWFHFACVG--LTTKPRG-------KWFCPRCSQES 66 (71)
T ss_dssp EECCSCSSCSCCCEETTTTT--CSSCCSS-------CCCCTTTSSCS
T ss_pred EeEeeCCCCCCccEecccCC--cCcCCCC-------CEECCCCCccc
Confidence 3568887788 699999997 5554432 45799998754
No 145
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}
Probab=71.06 E-value=0.39 Score=34.19 Aligned_cols=57 Identities=19% Similarity=0.452 Sum_probs=35.6
Q ss_pred CCcccccccccccccchhhccccCCCCCcccccCCCCCCcchhhHHHHHHhh--h-ccCccccccccCCCCCCCcccc
Q 022965 207 YQQVECGICYAQFLPIDEELGAKSGGGTDYTCDNSSCSKAFHSVCLGDWLRS--I-TTTRQSYDVLFGNCPYCSEPVA 281 (289)
Q Consensus 207 ~~~~eC~ICy~~~l~~d~~~~~~~g~~Pd~~C~n~~C~h~FH~~CL~eWL~~--l-~~~r~sF~~i~g~CP~Cr~~i~ 281 (289)
.....|.||....... .+ .-..| -.|...||..|+..=|.+ + |.. .=.||.|....+
T Consensus 4 ~~~~~C~vC~~~~~~~-------~~--~ll~C--d~C~~~~H~~C~~p~l~~~~~~p~~-------~W~C~~C~~~~~ 63 (66)
T 2yt5_A 4 GSSGVCTICQEEYSEA-------PN--EMVIC--DKCGQGYHQLCHTPHIDSSVIDSDE-------KWLCRQCVFATT 63 (66)
T ss_dssp CCCCCBSSSCCCCCBT-------TB--CEEEC--SSSCCEEETTTSSSCCCHHHHHSSC-------CCCCHHHHHTTS
T ss_pred CCCCCCCCCCCCCCCC-------CC--CEEEC--CCCChHHHhhhCCCcccccccCCCC-------CEECCCCcCccc
Confidence 4567899999753210 11 23568 479999999999653322 1 222 347998876544
No 146
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2
Probab=70.93 E-value=2 Score=33.20 Aligned_cols=36 Identities=39% Similarity=0.754 Sum_probs=26.0
Q ss_pred cccccCCCCC-CcchhhHHHHHHhhhccCccccccccCCCCCCCcc
Q 022965 235 DYTCDNSSCS-KAFHSVCLGDWLRSITTTRQSYDVLFGNCPYCSEP 279 (289)
Q Consensus 235 d~~C~n~~C~-h~FH~~CL~eWL~~l~~~r~sF~~i~g~CP~Cr~~ 279 (289)
-.-|++..|. .-||..|+- |...|.. .=.||.|+..
T Consensus 49 MI~CD~~dC~~~WfH~~CVg--l~~~p~g-------~W~Cp~C~~~ 85 (91)
T 1weu_A 49 MIGCDNPDCSIEWFHFACVG--LTTKPRG-------KWFCPRCSQE 85 (91)
T ss_dssp CCCCSCSSCSCCCCCSTTTT--CSSCCCS-------SCCCTTTCCC
T ss_pred EeEecCCCCCCCCEecccCC--cCcCCCC-------CEECcCccCc
Confidence 3568887788 689999997 4443332 4589999875
No 147
>2z6o_A UFM1-conjugating enzyme 1; UFC1, ubiquitin, UBL, polymorphism, UBL conjugation pathway, ligase; 1.60A {Homo sapiens} PDB: 2z6p_A 1ywz_A 2in1_A 2k07_A 3e2g_A 3evx_A
Probab=70.01 E-value=5.4 Score=34.39 Aligned_cols=59 Identities=14% Similarity=0.138 Sum_probs=38.6
Q ss_pred hhHHHHHHHHHHHhccceeeeecCCcceEEEEEEeCCCC---------------EEEEEEEeCCCCCCCCCCccc
Q 022965 13 SSFSRSVYSEIEEVGWEHLVRLSEDLKFLSFRVIDKKGR---------------VHCMEIQLDKNYPRSPPSISA 72 (289)
Q Consensus 13 ~~~y~~l~~Ei~~igw~~l~~id~~l~~i~l~~~D~~~R---------------~H~l~i~l~~~yp~~~P~~~~ 72 (289)
...-+||.+|..++.- .+.-...++....-.+.+..|- ...|++.+|.+||..||.|..
T Consensus 31 ~~w~~RL~eE~k~L~k-~v~p~k~n~~~W~~ii~Gp~gT~WeGgcw~~~~~~~y~F~L~~~fPe~YP~~PPeV~F 104 (172)
T 2z6o_A 31 ELWVQRLKEEYQSLIR-YVENNKNADNDWFRLESNKEGTRWFGKCWYIHDLLKYEFDIEFDIPITYPTTAPEIAV 104 (172)
T ss_dssp HHHHHHHHHHHHHHHH-HHHHHHHTTCCCEEEEECTTSCEEEEEEEEEETTEEEEEEEEEECCTTTTTSCCCCBC
T ss_pred HHHHHHHHHHHHHHHH-HhccCccccceeEEeecCCCCCcccCcccccccccceEEEEEEECCCCCCCCCCeeee
Confidence 5667888888887653 2222223343333333444442 778999999999999999876
No 148
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=68.86 E-value=6.1 Score=30.95 Aligned_cols=38 Identities=18% Similarity=0.383 Sum_probs=23.7
Q ss_pred ccccccccccccchhhccccCCCCCcccccCCCCCCcchhhHHHH
Q 022965 210 VECGICYAQFLPIDEELGAKSGGGTDYTCDNSSCSKAFHSVCLGD 254 (289)
Q Consensus 210 ~eC~ICy~~~l~~d~~~~~~~g~~Pd~~C~n~~C~h~FH~~CL~e 254 (289)
..|++|...-. ... ....-.-..| ..|+..||..||..
T Consensus 6 ~~C~~C~~~~~----~~~-~g~~~~Ll~C--~~C~~~~H~~Cl~~ 43 (112)
T 3v43_A 6 PICSFCLGTKE----QNR-EKKPEELISC--ADCGNSGHPSCLKF 43 (112)
T ss_dssp SSBTTTCCCTT----CCT-TSCCCCCEEC--TTTCCEECHHHHTC
T ss_pred ccccccCCchh----hCc-CCCchhceEh--hhcCCCCCCchhcC
Confidence 47999987521 110 0111234568 66999999999953
No 149
>3r3q_A Suppressor protein STP22 of temperature-sensitive factor receptor and arginine permease...; endosomal sorting, ESCRT-I; 1.45A {Saccharomyces cerevisiae} SCOP: d.20.1.2 PDB: 3r42_A 1uzx_A*
Probab=68.38 E-value=4.1 Score=34.57 Aligned_cols=47 Identities=21% Similarity=0.310 Sum_probs=34.1
Q ss_pred EEEEEEeCCCCCCCCCCccccCC----------Cc--ccc------------ccCc-cccHHHHHHHHHHHH
Q 022965 53 HCMEIQLDKNYPRSPPSISADVP----------YI--FNL------------KWSR-KSRLKDLLQQFREHL 99 (289)
Q Consensus 53 H~l~i~l~~~yp~~~P~~~~dlP----------~~--f~l------------~w~~-~s~L~~i~~qF~~~l 99 (289)
.-|.|.+|.+||..||.|.+.-+ +. -.+ .|++ .++|.++++.....+
T Consensus 83 ~pi~IwlP~~YP~~PP~v~v~p~t~~m~~~~~~I~~hpnVD~~G~I~lpyL~~W~p~~s~L~~ll~~l~~lf 154 (162)
T 3r3q_A 83 IPVIMWVPSMYPVKPPFISINLENFDMNTISSSLPIQEYIDSNGWIALPILHAWDPAAMNLIMVVQELMSLL 154 (162)
T ss_dssp EEEEEECCTTTTTSCCEEEECGGGCCTTTSCTTSTHHHHBCTTSBBCCGGGGSCCGGGCCHHHHHHHHHHTT
T ss_pred ccEEEEeCcccCCCCCEEEEECCCccccccccccCCCCCCCCCCcEeCcccccCCCCcCcHHHHHHHHHHHh
Confidence 56899999999999999988531 11 011 6998 578998887666544
No 150
>1ukx_A GCN2, GCN2 EIF2alpha kinase; UBC-like fold, triple beta-turns, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.20.1.3
Probab=67.52 E-value=43 Score=26.25 Aligned_cols=61 Identities=16% Similarity=0.244 Sum_probs=37.8
Q ss_pred ChhHHHHHHHHHHHhc---cceeeeecCC-------cceEEEEEEeC--CC----CEEEEEEEeCCCCCCCCCCccc
Q 022965 12 SSSFSRSVYSEIEEVG---WEHLVRLSED-------LKFLSFRVIDK--KG----RVHCMEIQLDKNYPRSPPSISA 72 (289)
Q Consensus 12 ~~~~y~~l~~Ei~~ig---w~~l~~id~~-------l~~i~l~~~D~--~~----R~H~l~i~l~~~yp~~~P~~~~ 72 (289)
...|-.....||++|. =+.+..++.. -..+++++.-. .+ -.-.|.|.+|.+||.++|.+..
T Consensus 8 ~~~~~e~q~~EleaL~SIY~d~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~L~v~~p~~YP~~~P~i~l 84 (137)
T 1ukx_A 8 MESYSQRQDHELQALEAIYGSDFQDLRPDARGRVREPPEINLVLYPQGLAGEEVYVQVELRVKCPPTYPDVVPEIDL 84 (137)
T ss_dssp CCCHHHHHHHHHHHHHHHTSSSEEECCCCCSSSCCCCCCEEEEECCTTSCSSSCSCEEEEEECCCTTTTSSCCCCEE
T ss_pred CcchHHHHHHHHHHHHHHCcccceeccCcccCccCCCcEEEEEEecCCcCCcccceEEEEEEECCCCCCCCCCcEEE
Confidence 3467777888887762 1333444431 24566666521 11 2345788889999999998876
No 151
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens}
Probab=64.26 E-value=3.7 Score=30.06 Aligned_cols=53 Identities=26% Similarity=0.458 Sum_probs=32.8
Q ss_pred CCcccccccccccccchhhccccCCCCCcccccCCCCCCcchhhHHHHHHhhhccCccccccccCCCCCCCcc
Q 022965 207 YQQVECGICYAQFLPIDEELGAKSGGGTDYTCDNSSCSKAFHSVCLGDWLRSITTTRQSYDVLFGNCPYCSEP 279 (289)
Q Consensus 207 ~~~~eC~ICy~~~l~~d~~~~~~~g~~Pd~~C~n~~C~h~FH~~CL~eWL~~l~~~r~sF~~i~g~CP~Cr~~ 279 (289)
.....|.||...-.. + ++ .-..|+ .|...||..|+.- ..+|++ .=.||.|+..
T Consensus 14 ~~~~~C~vC~~~~s~--~-----~~--~ll~CD--~C~~~~H~~Cl~~--~~vP~g-------~W~C~~C~~~ 66 (71)
T 2ku3_A 14 DEDAVCSICMDGESQ--N-----SN--VILFCD--MCNLAVHQECYGV--PYIPEG-------QWLCRHCLQS 66 (71)
T ss_dssp CSSCSCSSSCCCCCC--S-----SS--CEEECS--SSCCEEEHHHHTC--SSCCSS-------CCCCHHHHHH
T ss_pred CCCCCCCCCCCCCCC--C-----CC--CEEECC--CCCCccccccCCC--CcCCCC-------CcCCccCcCc
Confidence 356689999875211 0 11 235685 7999999999953 123332 3468888653
No 152
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=63.31 E-value=1.7 Score=34.24 Aligned_cols=34 Identities=26% Similarity=0.615 Sum_probs=26.0
Q ss_pred ccccCCCCCCcchhhHHHHHHhhhccCccccccccCCCCCCCc
Q 022965 236 YTCDNSSCSKAFHSVCLGDWLRSITTTRQSYDVLFGNCPYCSE 278 (289)
Q Consensus 236 ~~C~n~~C~h~FH~~CL~eWL~~l~~~r~sF~~i~g~CP~Cr~ 278 (289)
..| -.|.+.||..||..=|..+|.. .=.||.|+.
T Consensus 78 l~C--d~C~~~yH~~Cl~p~l~~~P~~-------~W~C~~C~~ 111 (112)
T 3v43_A 78 LFC--DSCDRGFHMECCDPPLTRMPKG-------MWICQICRP 111 (112)
T ss_dssp EEC--TTTCCEECGGGCSSCCSSCCSS-------CCCCTTTSC
T ss_pred EEc--CCCCCeeecccCCCCCCCCCCC-------CeECCCCCC
Confidence 467 4599999999997666666654 347999985
No 153
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=62.70 E-value=2.1 Score=33.85 Aligned_cols=41 Identities=22% Similarity=0.459 Sum_probs=24.7
Q ss_pred cccccccccccchhhccccCCCCCcccccCCCCCCcchhhHHHHHHh
Q 022965 211 ECGICYAQFLPIDEELGAKSGGGTDYTCDNSSCSKAFHSVCLGDWLR 257 (289)
Q Consensus 211 eC~ICy~~~l~~d~~~~~~~g~~Pd~~C~n~~C~h~FH~~CL~eWL~ 257 (289)
.|.||...-.. +...| + .-.-..| ..|+..||..||.-+++
T Consensus 3 ~C~~C~~~~~~-n~k~g--~-~~~Li~C--~~C~~~~H~~Cl~~~~~ 43 (114)
T 2kwj_A 3 YCDFCLGGSNM-NKKSG--R-PEELVSC--ADCGRSGHPTCLQFTLN 43 (114)
T ss_dssp CCSSSCCBTTB-CTTTC--C-CCCCEEC--SSSCCEECTTTTTCCHH
T ss_pred cCccCCCCccc-cccCC--C-CCCCeEe--CCCCCccchhhCCChhh
Confidence 59999764210 00001 1 1134568 57999999999976644
No 154
>2daw_A RWD domain containing protein 2; alpha+beta sandwich fold, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.20.1.3
Probab=62.28 E-value=17 Score=29.92 Aligned_cols=24 Identities=8% Similarity=0.188 Sum_probs=20.7
Q ss_pred EEEEEEEeCCCCCCCCCCccccCC
Q 022965 52 VHCMEIQLDKNYPRSPPSISADVP 75 (289)
Q Consensus 52 ~H~l~i~l~~~yp~~~P~~~~dlP 75 (289)
.-.|.|.+|.+||..+|.+.+.-+
T Consensus 76 ~i~L~v~lP~~YP~~~P~i~l~~~ 99 (154)
T 2daw_A 76 KIDLQVTMPHSYPYLALQLFGRSS 99 (154)
T ss_dssp EEEEEEEECSSTTSSCCEEEEECS
T ss_pred eEEEEEEcCCCCCCCCCcEEEEeC
Confidence 577899999999999999987754
No 155
>2dax_A Protein C21ORF6; RWD domain, alpha+beta sandwich fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.20.1.3
Probab=60.72 E-value=27 Score=28.30 Aligned_cols=24 Identities=21% Similarity=0.335 Sum_probs=19.4
Q ss_pred EEEEEEEeCCCCCCCCCCccccCC
Q 022965 52 VHCMEIQLDKNYPRSPPSISADVP 75 (289)
Q Consensus 52 ~H~l~i~l~~~yp~~~P~~~~dlP 75 (289)
.-.|.|.+|.+||.++|.+.+.-+
T Consensus 74 ~l~L~v~lP~~YP~~~P~i~l~~~ 97 (152)
T 2dax_A 74 MFSLACILPFKYPAVLPEITVRSV 97 (152)
T ss_dssp EEEEEEEECSSTTSSCCCCEEECT
T ss_pred eEEEEEECCCCCCCCCCeEEEEcc
Confidence 456778889999999999987654
No 156
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A
Probab=60.61 E-value=0.85 Score=32.77 Aligned_cols=50 Identities=34% Similarity=0.725 Sum_probs=34.4
Q ss_pred CCcccccccccccccchhhccccCCCCCcccccCCCCCCcchhhHHHHHHhhhccCccccccccCCCCCCCcc
Q 022965 207 YQQVECGICYAQFLPIDEELGAKSGGGTDYTCDNSSCSKAFHSVCLGDWLRSITTTRQSYDVLFGNCPYCSEP 279 (289)
Q Consensus 207 ~~~~eC~ICy~~~l~~d~~~~~~~g~~Pd~~C~n~~C~h~FH~~CL~eWL~~l~~~r~sF~~i~g~CP~Cr~~ 279 (289)
+.+..|.||-.. |. -..|+ .|...||..||..=|...|.. .=.||.|...
T Consensus 6 ~~~~~C~vC~~~------------g~--ll~CD--~C~~~fH~~Cl~ppl~~~P~g-------~W~C~~C~~~ 55 (66)
T 1xwh_A 6 KNEDECAVCRDG------------GE--LICCD--GCPRAFHLACLSPPLREIPSG-------TWRCSSCLQA 55 (66)
T ss_dssp SCCCSBSSSSCC------------SS--CEECS--SCCCEECTTTSSSCCSSCCSS-------CCCCHHHHHT
T ss_pred CCCCCCccCCCC------------CC--EEEcC--CCChhhcccccCCCcCcCCCC-------CeECccccCc
Confidence 456689999853 11 34685 699999999997545554432 3469999765
No 157
>2jmi_A Protein YNG1, ING1 homolog 1; PHD, histone, recognition, yeast, protein binding; NMR {Saccharomyces cerevisiae} PDB: 2jmj_A*
Probab=57.96 E-value=1.4 Score=34.06 Aligned_cols=51 Identities=33% Similarity=0.677 Sum_probs=32.4
Q ss_pred CCCcccccccccccccchhhccccCCCCCcccccCCCCC-CcchhhHHHHHHhhhccCccccccccCCCCC-CCc
Q 022965 206 NYQQVECGICYAQFLPIDEELGAKSGGGTDYTCDNSSCS-KAFHSVCLGDWLRSITTTRQSYDVLFGNCPY-CSE 278 (289)
Q Consensus 206 ~~~~~eC~ICy~~~l~~d~~~~~~~g~~Pd~~C~n~~C~-h~FH~~CL~eWL~~l~~~r~sF~~i~g~CP~-Cr~ 278 (289)
++...-| ||-... .|. -.-|++-.|. .-||..||- |...|.. .=.||. |++
T Consensus 23 ~~~~~yC-iC~~~~----------~g~--MI~CD~c~C~~eWfH~~CVg--l~~~p~~-------~W~Cp~cC~~ 75 (90)
T 2jmi_A 23 NQEEVYC-FCRNVS----------YGP--MVACDNPACPFEWFHYGCVG--LKQAPKG-------KWYCSKDCKE 75 (90)
T ss_dssp -CCSCCS-TTTCCC----------SSS--EECCCSSSCSCSCEETTTSS--CSSCTTS-------CCCSSHHHHH
T ss_pred CCCCcEE-EeCCCC----------CCC--EEEecCCCCccccCcCccCC--CCcCCCC-------CccCChhhcc
Confidence 3445566 997642 222 3568887777 689999995 3333321 457999 975
No 158
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}
Probab=55.53 E-value=8.2 Score=29.22 Aligned_cols=57 Identities=25% Similarity=0.361 Sum_probs=36.0
Q ss_pred CCcccccccccccccchhhccccCCCCCcccccCCCCCCcchhhHHHHHHhhhccCccccccccCCCCCCCcccccc
Q 022965 207 YQQVECGICYAQFLPIDEELGAKSGGGTDYTCDNSSCSKAFHSVCLGDWLRSITTTRQSYDVLFGNCPYCSEPVAVK 283 (289)
Q Consensus 207 ~~~~eC~ICy~~~l~~d~~~~~~~g~~Pd~~C~n~~C~h~FH~~CL~eWL~~l~~~r~sF~~i~g~CP~Cr~~i~~~ 283 (289)
+.+..|.||...-...++ .-..|+ .|...||..|+.-= .+|.+ .=.||.|......+
T Consensus 23 ~~~~~C~vC~~~~s~~~~---------~ll~CD--~C~~~fH~~Cl~p~--~vP~g-------~W~C~~C~~~~~~~ 79 (88)
T 2l43_A 23 DEDAVCSICMDGESQNSN---------VILFCD--MCNLAVHQECYGVP--YIPEG-------QWLCRHCLQSRARP 79 (88)
T ss_dssp CCCCCCSSCCSSSSCSEE---------EEEECS--SSCCCCCHHHHTCS--SCCSS-------CCCCHHHHHHTTSC
T ss_pred CCCCcCCcCCCCCCCCCC---------CEEECC--CCCchhhcccCCCC--ccCCC-------ceECccccCccchh
Confidence 456789999864211011 124685 69999999999641 23432 35799998765544
No 159
>3c6w_A P28ING5, inhibitor of growth protein 5; chromatin, PHD, ING, epigenetics, alternative splicing, metal-binding, phosphoprotein, zinc; HET: M3L; 1.75A {Homo sapiens} PDB: 2pnx_A*
Probab=54.87 E-value=1.6 Score=30.86 Aligned_cols=35 Identities=31% Similarity=0.673 Sum_probs=25.2
Q ss_pred cccccCCCCC-CcchhhHHHHHHhhhccCccccccccCCCCCCCc
Q 022965 235 DYTCDNSSCS-KAFHSVCLGDWLRSITTTRQSYDVLFGNCPYCSE 278 (289)
Q Consensus 235 d~~C~n~~C~-h~FH~~CL~eWL~~l~~~r~sF~~i~g~CP~Cr~ 278 (289)
-.-|++..|. .-||..|+. |...|.+ .=.||.|+.
T Consensus 22 mi~CD~~~C~~~wfH~~Cvg--l~~~p~~-------~w~Cp~C~~ 57 (59)
T 3c6w_A 22 MIGCDNPDCPIEWFHFACVD--LTTKPKG-------KWFCPRCVQ 57 (59)
T ss_dssp EEECSCTTCSSCEEETGGGT--CSSCCSS-------CCCCHHHHC
T ss_pred eeEeeCCCCCCCCEecccCC--cccCCCC-------CEECcCccC
Confidence 3568887898 699999997 5544432 357998865
No 160
>2vnf_A ING 4, P29ING4, inhibitor of growth protein 4; acetylation, alternative splicing, anti-oncogene, cell cycle, coiled C nucleus, zinc, zinc-finger, ING4; HET: M3L; 1.76A {Homo sapiens} SCOP: g.50.1.2 PDB: 2k1j_A 2jmq_A 2qic_A*
Probab=53.01 E-value=1.7 Score=30.70 Aligned_cols=34 Identities=41% Similarity=0.832 Sum_probs=24.7
Q ss_pred ccccCCCCC-CcchhhHHHHHHhhhccCccccccccCCCCCCCc
Q 022965 236 YTCDNSSCS-KAFHSVCLGDWLRSITTTRQSYDVLFGNCPYCSE 278 (289)
Q Consensus 236 ~~C~n~~C~-h~FH~~CL~eWL~~l~~~r~sF~~i~g~CP~Cr~ 278 (289)
..|++..|. .-||..|+. |...|.+ .=.||.|+.
T Consensus 24 i~CD~cdC~~~wfH~~Cvg--l~~~p~g-------~w~C~~C~~ 58 (60)
T 2vnf_A 24 IGCDNPDCSIEWFHFACVG--LTTKPRG-------KWFCPRCSQ 58 (60)
T ss_dssp EECSCTTCSSCEEETGGGT--CSSCCSS-------CCCCHHHHC
T ss_pred EEeCCCCCCCceEehhcCC--CCcCCCC-------CEECcCccC
Confidence 568777788 789999997 5554433 357888865
No 161
>4ayb_P DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2pmz_P 2wb1_P 2y0s_P 3hkz_P 2waq_P 4b1o_P 4b1p_X
Probab=52.45 E-value=3.5 Score=28.43 Aligned_cols=33 Identities=30% Similarity=0.762 Sum_probs=22.2
Q ss_pred ccccCCCCCCcchhhHHHHHHhhhccCccccccccCCCCCCCcccccc
Q 022965 236 YTCDNSSCSKAFHSVCLGDWLRSITTTRQSYDVLFGNCPYCSEPVAVK 283 (289)
Q Consensus 236 ~~C~n~~C~h~FH~~CL~eWL~~l~~~r~sF~~i~g~CP~Cr~~i~~~ 283 (289)
..| ++||+.|-.+=| +.+|+ -.||||.-.|-.|
T Consensus 4 Y~C--~rCg~~fs~~el----~~lP~---------IrCpyCGyrii~K 36 (48)
T 4ayb_P 4 YRC--GKCWKTFTDEQL----KVLPG---------VRCPYCGYKIIFM 36 (48)
T ss_dssp -CC--CCTTTTCCCCCS----CCCSS---------SCCTTTCCSCEEC
T ss_pred EEe--eccCCCccHHHH----hhCCC---------cccCccCcEEEEE
Confidence 457 888888876543 55554 3799998766554
No 162
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=51.58 E-value=4.3 Score=31.34 Aligned_cols=50 Identities=26% Similarity=0.408 Sum_probs=30.3
Q ss_pred CCcccccccccccccchhhccccCCCCCcccccCCCCCCcchhhHHHHHHhhhccCccccccccCCCCCCCc
Q 022965 207 YQQVECGICYAQFLPIDEELGAKSGGGTDYTCDNSSCSKAFHSVCLGDWLRSITTTRQSYDVLFGNCPYCSE 278 (289)
Q Consensus 207 ~~~~eC~ICy~~~l~~d~~~~~~~g~~Pd~~C~n~~C~h~FH~~CL~eWL~~l~~~r~sF~~i~g~CP~Cr~ 278 (289)
++...| ||-.... +| .-..| -.|..-||..|+.-=+..+|. .=.||.|+.
T Consensus 26 ~d~vrC-iC~~~~~---------~~--~mi~C--d~C~~w~H~~C~~~~~~~~p~--------~w~C~~C~~ 75 (98)
T 2lv9_A 26 TDVTRC-ICGFTHD---------DG--YMICC--DKCSVWQHIDCMGIDRQHIPD--------TYLCERCQP 75 (98)
T ss_dssp CCBCCC-TTSCCSC---------SS--CEEEB--TTTCBEEETTTTTCCTTSCCS--------SBCCTTTSS
T ss_pred CCCEEe-ECCCccC---------CC--cEEEc--CCCCCcCcCcCCCCCccCCCC--------CEECCCCcC
Confidence 344567 8876531 22 23568 469999999998431111111 248999984
No 163
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=51.49 E-value=0.92 Score=34.54 Aligned_cols=56 Identities=16% Similarity=0.446 Sum_probs=35.6
Q ss_pred CcccccccccccccchhhccccCCCCCcccccCCCCCCcchhhHHHHHHhh----hccCccccccccCCCCCCCcccc
Q 022965 208 QQVECGICYAQFLPIDEELGAKSGGGTDYTCDNSSCSKAFHSVCLGDWLRS----ITTTRQSYDVLFGNCPYCSEPVA 281 (289)
Q Consensus 208 ~~~eC~ICy~~~l~~d~~~~~~~g~~Pd~~C~n~~C~h~FH~~CL~eWL~~----l~~~r~sF~~i~g~CP~Cr~~i~ 281 (289)
....|.||...-.+ ..-....|+ .|...||..|+..=|.. .|.. .=.|+.|.....
T Consensus 15 ~~~~C~vC~~~~~~---------~~~~ll~CD--~C~~~yH~~Cl~Ppl~~~~~~~p~g-------~W~C~~C~~~~~ 74 (88)
T 1wev_A 15 MGLACVVCRQMTVA---------SGNQLVECQ--ECHNLYHQDCHKPQVTDKEVNDPRL-------VWYCARCTRQMK 74 (88)
T ss_dssp HCCSCSSSCCCCCC---------TTCCEEECS--SSCCEEETTTSSSCCCHHHHHCTTC-------CCCCHHHHHHHC
T ss_pred CCCcCCCCCCCCCC---------CCCceEECC--CCCCeEcCccCCCcccccccCCCCC-------CeeCccccchhh
Confidence 44579999975321 011245684 69999999999754442 2322 357999987654
No 164
>3shb_A E3 ubiquitin-protein ligase UHRF1; unmodified histone, methylation, UHRF1, PHD, ligase-NUCL protein complex; 1.80A {Homo sapiens}
Probab=50.33 E-value=1.9 Score=32.28 Aligned_cols=35 Identities=37% Similarity=0.747 Sum_probs=25.6
Q ss_pred ccccCCCCCCcchhhHHHHHHhhhccCccccccccCCCCCCCc
Q 022965 236 YTCDNSSCSKAFHSVCLGDWLRSITTTRQSYDVLFGNCPYCSE 278 (289)
Q Consensus 236 ~~C~n~~C~h~FH~~CL~eWL~~l~~~r~sF~~i~g~CP~Cr~ 278 (289)
..|+ .|...||..||..=|..+|... .=.||.|++
T Consensus 42 l~CD--~C~~~yH~~Cl~PpL~~~P~g~------~W~C~~C~~ 76 (77)
T 3shb_A 42 LMCD--ECDMAFHIYCLDPPLSSVPSED------EWYCPECRN 76 (77)
T ss_dssp EECT--TTCCEEETTTSSSCCSSCCSSS------CCCCTTTC-
T ss_pred eEeC--CCCCccCcccCCCcccCCCCCC------ceECcCccc
Confidence 4674 6999999999987777766541 147999985
No 165
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=49.18 E-value=6.9 Score=27.36 Aligned_cols=56 Identities=27% Similarity=0.536 Sum_probs=34.1
Q ss_pred CCCcccccccccccccchhhccccCCCCCcccccCCCCCCcchhhHHHHHHhhhccCccccccccCCCCCCCcc
Q 022965 206 NYQQVECGICYAQFLPIDEELGAKSGGGTDYTCDNSSCSKAFHSVCLGDWLRSITTTRQSYDVLFGNCPYCSEP 279 (289)
Q Consensus 206 ~~~~~eC~ICy~~~l~~d~~~~~~~g~~Pd~~C~n~~C~h~FH~~CL~eWL~~l~~~r~sF~~i~g~CP~Cr~~ 279 (289)
+++...|+||-..+.+ ++ .-..|+ .|..=||..|+-- +... .=....-.||.|+.+
T Consensus 3 ~~e~~~C~~C~~~~~~--------~~--~mI~Cd--~C~~WfH~~Cvgl-----~~~~-~~~~~~~~C~~C~~k 58 (64)
T 1we9_A 3 SGSSGQCGACGESYAA--------DE--FWICCD--LCEMWFHGKCVKI-----TPAR-AEHIKQYKCPSCSNK 58 (64)
T ss_dssp CSSCCCCSSSCCCCCS--------SS--CEEECS--SSCCEEETTTTTC-----CTTG-GGGCSSCCCHHHHTT
T ss_pred CCCCCCCCCCCCccCC--------CC--CEEEcc--CCCCCCCccccCc-----ChhH-hcCCCcEECCCCcCc
Confidence 3456779999876521 11 235685 7999999999832 1110 001124689999764
No 166
>1wew_A DNA-binding family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=43.74 E-value=16 Score=26.81 Aligned_cols=56 Identities=16% Similarity=0.306 Sum_probs=34.2
Q ss_pred CCcccccccccccccchhhccccCCCCCcccccCCCCCCcchhhHHHHHHhhhccCccc---cccccCCCCCCCcc
Q 022965 207 YQQVECGICYAQFLPIDEELGAKSGGGTDYTCDNSSCSKAFHSVCLGDWLRSITTTRQS---YDVLFGNCPYCSEP 279 (289)
Q Consensus 207 ~~~~eC~ICy~~~l~~d~~~~~~~g~~Pd~~C~n~~C~h~FH~~CL~eWL~~l~~~r~s---F~~i~g~CP~Cr~~ 279 (289)
+....| ||-.... +| .-.-|+|..|..=||..|+- ++..... =..-.-.||.|+..
T Consensus 14 ~~~~~C-iC~~~~~---------~g--~MI~CD~~~C~~W~H~~CVg-----i~~~~~~~~~~~~~~~~C~~C~~~ 72 (78)
T 1wew_A 14 EIKVRC-VCGNSLE---------TD--SMIQCEDPRCHVWQHVGCVI-----LPDKPMDGNPPLPESFYCEICRLT 72 (78)
T ss_dssp CCCCCC-SSCCCCC---------CS--CEEECSSTTTCCEEEHHHHS-----CCCTTTCSCSCSCSSCCCHHHHHC
T ss_pred CCCEEe-ECCCcCC---------CC--CEEEECCccCCccccCEEEc-----cccccccccccCCCCEECCCCCcc
Confidence 345667 8887621 22 34679999999999999993 2211000 00124589999764
No 167
>2g6q_A Inhibitor of growth protein 2; protein-peptide complex, gene regulation, apoptosis; HET: M3L; 2.00A {Mus musculus}
Probab=42.68 E-value=3.2 Score=29.56 Aligned_cols=35 Identities=31% Similarity=0.626 Sum_probs=24.5
Q ss_pred cccccCCCCC-CcchhhHHHHHHhhhccCccccccccCCCCCCCc
Q 022965 235 DYTCDNSSCS-KAFHSVCLGDWLRSITTTRQSYDVLFGNCPYCSE 278 (289)
Q Consensus 235 d~~C~n~~C~-h~FH~~CL~eWL~~l~~~r~sF~~i~g~CP~Cr~ 278 (289)
-.-|++..|. .-||..|+. |...|.+ .=.||.|+.
T Consensus 24 MI~CD~c~C~~~WfH~~Cvg--l~~~p~~-------~w~Cp~C~~ 59 (62)
T 2g6q_A 24 MIGCDNEQCPIEWFHFSCVS--LTYKPKG-------KWYCPKCRG 59 (62)
T ss_dssp EEECSCTTCSSCEEETGGGT--CSSCCSS-------CCCCHHHHT
T ss_pred eeeeeCCCCCcccEecccCC--cCcCCCC-------CEECcCccc
Confidence 3568877787 899999996 4433322 457999975
No 168
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=39.50 E-value=12 Score=27.97 Aligned_cols=35 Identities=23% Similarity=0.493 Sum_probs=26.4
Q ss_pred cccccccccccccchhhccccCCCCCcccccCCCCCCcchhhHHHH-HH
Q 022965 209 QVECGICYAQFLPIDEELGAKSGGGTDYTCDNSSCSKAFHSVCLGD-WL 256 (289)
Q Consensus 209 ~~eC~ICy~~~l~~d~~~~~~~g~~Pd~~C~n~~C~h~FH~~CL~e-WL 256 (289)
+..|.||.+.+. .-|...| ..|+|.|=..||.. |-
T Consensus 3 e~~C~~C~~~~~-----------~~av~~C--~~C~~~~C~~Cl~~~h~ 38 (101)
T 2jun_A 3 KVLCQFCDQDPA-----------QDAVKTC--VTCEVSYCDECLKATHP 38 (101)
T ss_dssp CCBCTTCCSSSC-----------CBCCEEE--TTTTEEECHHHHHHHSC
T ss_pred CCCCcCCCCCCC-----------CCceEEC--CcCChHHhHHHCHHHhc
Confidence 467999996432 1245678 88999999999998 44
No 169
>3asl_A E3 ubiquitin-protein ligase UHRF1; histone reader module, epigenetic regulation, LI binding protein complex; 1.41A {Homo sapiens} PDB: 3sou_A 3sow_A* 3sox_A 3zvy_A 2lgg_A 2lgk_A* 2lgl_A 3t6r_A 3zvz_B
Probab=38.95 E-value=5.6 Score=28.90 Aligned_cols=36 Identities=36% Similarity=0.719 Sum_probs=24.1
Q ss_pred ccccCCCCCCcchhhHHHHHHhhhccCccccccccCCCCCCCcc
Q 022965 236 YTCDNSSCSKAFHSVCLGDWLRSITTTRQSYDVLFGNCPYCSEP 279 (289)
Q Consensus 236 ~~C~n~~C~h~FH~~CL~eWL~~l~~~r~sF~~i~g~CP~Cr~~ 279 (289)
..|+ .|...||..||..=|..+|.+. .=.||.|+..
T Consensus 34 l~CD--~C~~~yH~~Cl~Ppl~~~P~g~------~W~C~~C~~~ 69 (70)
T 3asl_A 34 LMCD--ECDMAFHIYCLDPPLSSVPSED------EWYCPECRND 69 (70)
T ss_dssp EECT--TTCCEEEGGGSSSCCSSCCSSS------CCCCTTTSCC
T ss_pred EEcC--CCCCceecccCCCCcCCCCCCC------CcCCcCccCc
Confidence 4685 6999999999965444444221 2389999753
No 170
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=38.52 E-value=25 Score=26.92 Aligned_cols=35 Identities=26% Similarity=0.577 Sum_probs=24.1
Q ss_pred cccCCCCCCcchhhHH------HHHHhhhccCccccccccCCCCCCCcc
Q 022965 237 TCDNSSCSKAFHSVCL------GDWLRSITTTRQSYDVLFGNCPYCSEP 279 (289)
Q Consensus 237 ~C~n~~C~h~FH~~CL------~eWL~~l~~~r~sF~~i~g~CP~Cr~~ 279 (289)
.| -.|+.-||..|+ ++=|..+|.+. ...||.|..+
T Consensus 4 ~c--~~c~~w~H~~c~~~~~~~~~~l~~lp~~~------~~~c~~C~~~ 44 (140)
T 2ku7_A 4 QC--GKCDRWVHSKCENLSDEMYEILSNLPESV------AYTCVNCTER 44 (140)
T ss_dssp CC--SCCSSCHHHHHCCCCHHHHHHHHSSCTTT------TCCSSCCTTT
T ss_pred cc--ccCCCccCCcccccCHHHHHHHhhccccc------eeeCcccccc
Confidence 46 459999999995 34444444333 4799999864
No 171
>2kgg_A Histone demethylase jarid1A; PHD finger, histone modification, leukemia, alternative splicing, chromatin regulator, developmental protein; NMR {Homo sapiens} PDB: 2kgi_A* 3gl6_A*
Probab=38.46 E-value=10 Score=25.73 Aligned_cols=32 Identities=28% Similarity=0.581 Sum_probs=22.3
Q ss_pred cccccccccccchhhccccCCCCCcccccCCCCCCcchhhHHH
Q 022965 211 ECGICYAQFLPIDEELGAKSGGGTDYTCDNSSCSKAFHSVCLG 253 (289)
Q Consensus 211 eC~ICy~~~l~~d~~~~~~~g~~Pd~~C~n~~C~h~FH~~CL~ 253 (289)
.|+||...+. ++ ..-..|++ .|..=||..|+-
T Consensus 4 ~cc~C~~p~~---------~~-~~mI~Cd~-~C~~WfH~~Cvg 35 (52)
T 2kgg_A 4 AAQNCQRPCK---------DK-VDWVQCDG-GCDEWFHQVCVG 35 (52)
T ss_dssp SCTTCCCCCC---------TT-CCEEECTT-TTCCEEETTTTT
T ss_pred cCCCCcCccC---------CC-CcEEEeCC-CCCccCcccccC
Confidence 5888877652 11 12346877 899999999984
No 172
>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2
Probab=35.49 E-value=40 Score=24.49 Aligned_cols=60 Identities=23% Similarity=0.479 Sum_probs=34.1
Q ss_pred CCcccccccccccccchhhccccCCCCCcccccCCCCCCcchhhHHHHHHhhhccCccccccccCCCCCCCcccccccc
Q 022965 207 YQQVECGICYAQFLPIDEELGAKSGGGTDYTCDNSSCSKAFHSVCLGDWLRSITTTRQSYDVLFGNCPYCSEPVAVKIS 285 (289)
Q Consensus 207 ~~~~eC~ICy~~~l~~d~~~~~~~g~~Pd~~C~n~~C~h~FH~~CL~eWL~~l~~~r~sF~~i~g~CP~Cr~~i~~~~~ 285 (289)
+...-| ||-..+- + + ..-..|+ .|..=||..|+--=-.... ....-.||.|+..-...+.
T Consensus 10 ~~~~~C-~C~~~~d---~-----~--~~MIqCd--~C~~WfH~~Cvgl~~~~~~------~~~~~~C~~C~~~~~~~~~ 69 (79)
T 1wep_A 10 LVPVYC-LCRQPYN---V-----N--HFMIECG--LCQDWFHGSCVGIEEENAV------DIDIYHCPDCEAVFGPSIM 69 (79)
T ss_dssp CCCCCS-TTSCSCC---S-----S--SCEEEBT--TTCCEEEHHHHTCCHHHHT------TCSBBCCTTTTTTSCSCBC
T ss_pred CCccEE-EcCCccC---C-----C--CceEEcC--CCCCcEEeeecCccccccc------CCCeEECCCcccccCCCce
Confidence 344556 8977541 0 1 1335686 5999999999942111100 0114589999986544333
No 173
>2lq6_A Bromodomain-containing protein 1; PHD finger, metal binding protein; NMR {Homo sapiens}
Probab=33.59 E-value=19 Score=27.18 Aligned_cols=34 Identities=26% Similarity=0.722 Sum_probs=25.1
Q ss_pred cccccccccccccchhhccccCCCCCcccccCCCCCCcchhhHHHH
Q 022965 209 QVECGICYAQFLPIDEELGAKSGGGTDYTCDNSSCSKAFHSVCLGD 254 (289)
Q Consensus 209 ~~eC~ICy~~~l~~d~~~~~~~g~~Pd~~C~n~~C~h~FH~~CL~e 254 (289)
...|.||-..- .| .-..|...+|...||..|-.+
T Consensus 17 ~l~C~iC~~~~----------~G--AciqC~~~~C~~~fHv~CA~~ 50 (87)
T 2lq6_A 17 KLTCYLCKQKG----------VG--ASIQCHKANCYTAFHVTCAQK 50 (87)
T ss_dssp CCCBTTTTBCC----------SS--CEEECSCTTTCCEEEHHHHHH
T ss_pred cCCCcCCCCCC----------Cc--EeEecCCCCCCCcCcHHHHHH
Confidence 45799996421 12 235799999999999999865
No 174
>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=33.53 E-value=5.9 Score=29.41 Aligned_cols=35 Identities=31% Similarity=0.783 Sum_probs=23.6
Q ss_pred ccccCCCCCCcchhhHHHHHHhhhccCccccccccCCCCCCCc
Q 022965 236 YTCDNSSCSKAFHSVCLGDWLRSITTTRQSYDVLFGNCPYCSE 278 (289)
Q Consensus 236 ~~C~n~~C~h~FH~~CL~eWL~~l~~~r~sF~~i~g~CP~Cr~ 278 (289)
..|+ .|...||..||..=|..+|.+. .=.||.|..
T Consensus 42 l~CD--~C~~~yH~~Cl~Ppl~~~P~g~------~W~C~~C~~ 76 (77)
T 2e6s_A 42 LLCD--ECNVAYHIYCLNPPLDKVPEEE------YWYCPSCKT 76 (77)
T ss_dssp EECS--SSCCEEETTSSSSCCSSCCCSS------CCCCTTTCC
T ss_pred EEcC--CCCccccccccCCCccCCCCCC------CcCCcCccC
Confidence 4684 7999999999965444444321 137999875
No 175
>2rsd_A E3 SUMO-protein ligase SIZ1; E3 SUMO ligase, plant homeodomain (PHD), histone binding; NMR {Oryza sativa japonica group}
Probab=33.07 E-value=11 Score=26.96 Aligned_cols=34 Identities=24% Similarity=0.637 Sum_probs=23.7
Q ss_pred CCcccccccccccccchhhccccCCCCCcccccCCCCCCcchhhHH
Q 022965 207 YQQVECGICYAQFLPIDEELGAKSGGGTDYTCDNSSCSKAFHSVCL 252 (289)
Q Consensus 207 ~~~~eC~ICy~~~l~~d~~~~~~~g~~Pd~~C~n~~C~h~FH~~CL 252 (289)
+....| ||-.... +|. -..|++.+|..=||..|+
T Consensus 8 e~~v~C-~C~~~~~---------~g~--mI~CD~~~C~~W~H~~Cv 41 (68)
T 2rsd_A 8 EAKVRC-ICSSTMV---------NDS--MIQCEDQRCQVWQHLNCV 41 (68)
T ss_dssp SCEECC-TTCCCSC---------CSC--EEECSCTTTCEEEETTTS
T ss_pred CCCEEe-ECCCCcC---------CCC--EEEECCCCCCCeEchhhC
Confidence 344567 8965421 232 356988899999999998
No 176
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A
Probab=32.32 E-value=49 Score=26.95 Aligned_cols=50 Identities=26% Similarity=0.483 Sum_probs=32.2
Q ss_pred CCcccccccccccccchhhccccCCCCCcccccCCCCCCcchhhHHHHH-----Hhhh--ccCccccccccCCCCCCCcc
Q 022965 207 YQQVECGICYAQFLPIDEELGAKSGGGTDYTCDNSSCSKAFHSVCLGDW-----LRSI--TTTRQSYDVLFGNCPYCSEP 279 (289)
Q Consensus 207 ~~~~eC~ICy~~~l~~d~~~~~~~g~~Pd~~C~n~~C~h~FH~~CL~eW-----L~~l--~~~r~sF~~i~g~CP~Cr~~ 279 (289)
..+..|.||-.- |.+ .-|+ .|-+.||..||..= |..+ +.. .=.|+.|+.+
T Consensus 55 g~~~~C~vC~dG------------G~L--lcCd--~Cpr~Fc~~Cl~~~lg~~~l~~i~~~~~-------~W~C~~C~~~ 111 (129)
T 3ql9_A 55 GMDEQCRWCAEG------------GNL--ICCD--FCHNAFCKKCILRNLGRRELSTIMDENN-------QWYCYICHPE 111 (129)
T ss_dssp SCBSSCTTTCCC------------SEE--EECS--SSSCEEEHHHHHHHTCHHHHHHHTCTTS-------CCCCTTTCCG
T ss_pred CCCCcCeecCCC------------Cee--EecC--CCchhhhHHHhCCCcchhHHHHhccCCC-------CeEcCCcCCH
Confidence 345568888752 221 2464 79999999999863 3332 222 4689999764
No 177
>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic regulation, trimethylaion of lysine residue, ligase-DNA binding protein; HET: M3L; 2.90A {Homo sapiens}
Probab=31.26 E-value=7.6 Score=34.74 Aligned_cols=36 Identities=36% Similarity=0.719 Sum_probs=21.8
Q ss_pred ccccCCCCCCcchhhHHHHHHhhhccCccccccccCCCCCCCcc
Q 022965 236 YTCDNSSCSKAFHSVCLGDWLRSITTTRQSYDVLFGNCPYCSEP 279 (289)
Q Consensus 236 ~~C~n~~C~h~FH~~CL~eWL~~l~~~r~sF~~i~g~CP~Cr~~ 279 (289)
..|+ .|...||..||..=|...|.+. .=.||.|+..
T Consensus 190 L~CD--~C~~~yH~~CL~PPL~~vP~G~------~W~Cp~C~~~ 225 (226)
T 3ask_A 190 LMCD--ECDMAFHIYCLDPPLSSVPSED------EWYCPECRND 225 (226)
T ss_dssp EECS--SSCCEECSCC--CCCCSCCSSS------CCCCGGGC--
T ss_pred EEcC--CCCcceeCccCCCCcccCCCCC------CCCCcCCcCc
Confidence 4685 6999999999975445544320 1269999753
No 178
>3kpa_A Probable ubiquitin fold modifier conjugating ENZY; UBL conjugation pathway, ligase, structural genomics, PSI; 2.20A {Leishmania major} SCOP: d.20.1.4
Probab=31.23 E-value=32 Score=29.32 Aligned_cols=21 Identities=29% Similarity=0.640 Sum_probs=18.2
Q ss_pred EEEEEEEeCCCCCCCCCCccc
Q 022965 52 VHCMEIQLDKNYPRSPPSISA 72 (289)
Q Consensus 52 ~H~l~i~l~~~yp~~~P~~~~ 72 (289)
+-.|++.+|.+||..||.+..
T Consensus 86 eFkLefdiP~tYP~tPPeI~F 106 (168)
T 3kpa_A 86 EFEMNFDIPVTYPQAPPEIAL 106 (168)
T ss_dssp EEEEEEECCTTTTTSCCCCBC
T ss_pred EEEEEEeCCccCCCCCCEeec
Confidence 556889999999999999875
No 179
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=30.95 E-value=3.8 Score=31.36 Aligned_cols=52 Identities=25% Similarity=0.510 Sum_probs=33.2
Q ss_pred CcccccccccccccchhhccccCCCCCcccccCCCCCCcchhhHHHHHHhhhccCccccccccCCCCCCCcc
Q 022965 208 QQVECGICYAQFLPIDEELGAKSGGGTDYTCDNSSCSKAFHSVCLGDWLRSITTTRQSYDVLFGNCPYCSEP 279 (289)
Q Consensus 208 ~~~eC~ICy~~~l~~d~~~~~~~g~~Pd~~C~n~~C~h~FH~~CL~eWL~~l~~~r~sF~~i~g~CP~Cr~~ 279 (289)
....|.||-..-. + + .-..|+ .|...||..||..=|..+|.. .=.||.|...
T Consensus 15 ~~~~C~vC~~~~~---~------~--~ll~CD--~C~~~~H~~Cl~Ppl~~~P~g-------~W~C~~C~~~ 66 (92)
T 2e6r_A 15 DSYICQVCSRGDE---D------D--KLLFCD--GCDDNYHIFCLLPPLPEIPRG-------IWRCPKCILA 66 (92)
T ss_dssp CCCCCSSSCCSGG---G------G--GCEECT--TTCCEECSSSSSSCCSSCCSS-------CCCCHHHHHH
T ss_pred CCCCCccCCCcCC---C------C--CEEEcC--CCCchhccccCCCCcccCCCC-------CcCCccCcCc
Confidence 4457999986521 1 0 134685 699999999996434444432 2359999764
No 180
>2xb1_A Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; fusion protein, signal transduction, transcription, metal BI WNT proteins; 1.90A {Homo sapiens}
Probab=30.90 E-value=18 Score=28.18 Aligned_cols=56 Identities=25% Similarity=0.530 Sum_probs=33.0
Q ss_pred ccccccccccccchhhccccCCCCCcccccCCCCCCcchhhHHHH--H-Hhhh-ccCccccccccCCCCCCCcccc
Q 022965 210 VECGICYAQFLPIDEELGAKSGGGTDYTCDNSSCSKAFHSVCLGD--W-LRSI-TTTRQSYDVLFGNCPYCSEPVA 281 (289)
Q Consensus 210 ~eC~ICy~~~l~~d~~~~~~~g~~Pd~~C~n~~C~h~FH~~CL~e--W-L~~l-~~~r~sF~~i~g~CP~Cr~~i~ 281 (289)
..|+||...+.+ ++. -..|+ ..|..=||..|+-- - ++.+ +... ..-.||.|+..-.
T Consensus 4 ~~C~iC~~p~~~--------~~~--mi~Cd-d~C~~WfH~~CVglt~~~~~~i~~~~~-----~~~~Cp~C~~~~~ 63 (105)
T 2xb1_A 4 YPCGACRSEVND--------DQD--AILCE-ASCQKWFHRECTGMTESAYGLLTTEAS-----AVWACDLCLKTKE 63 (105)
T ss_dssp CBCTTTCSBCCT--------TSC--EEECT-TTTCCEEEGGGTTCCHHHHHHHHHCTT-----EEECCHHHHHTTT
T ss_pred CCCCCCCCccCC--------CCC--EEEec-CCcccccccccCCcCHHHHHhhccCCC-----CCEECccccCcCC
Confidence 369999987631 221 34686 38999999999831 0 0000 0000 1358999987543
No 181
>3ipj_A PTS system, iiabc component; iiabc component,PSI, structural genomics, MCSG, structure initiative; 1.20A {Clostridium difficile}
Probab=28.75 E-value=43 Score=25.68 Aligned_cols=34 Identities=18% Similarity=0.303 Sum_probs=27.3
Q ss_pred HHHHHHH-HHHhccceeeeecCCcceEEEEEEeCC
Q 022965 16 SRSVYSE-IEEVGWEHLVRLSEDLKFLSFRVIDKK 49 (289)
Q Consensus 16 y~~l~~E-i~~igw~~l~~id~~l~~i~l~~~D~~ 49 (289)
|..+.++ |+.||.+++.+++...+.++|++.|.+
T Consensus 6 y~~~A~~Ii~~lG~eNI~~v~~C~TRLR~~lkD~~ 40 (95)
T 3ipj_A 6 YNKIANELIKIIGEDNIISITHCATRLRVMVKDRE 40 (95)
T ss_dssp HHHHHHHHHHHHCGGGEEEEEECSSEEEEEESCGG
T ss_pred HHHHHHHHHHHHCHHHhhhhhhccceeEEEEeCcc
Confidence 5555555 345599999999999999999999954
No 182
>2jyp_A Aragonite protein AP7; protein C-terminal fragment, unknown function; NMR {Synthetic}
Probab=28.37 E-value=26 Score=22.10 Aligned_cols=11 Identities=36% Similarity=0.869 Sum_probs=8.9
Q ss_pred ccccccccccc
Q 022965 210 VECGICYAQFL 220 (289)
Q Consensus 210 ~eC~ICy~~~l 220 (289)
.+|+.||+.--
T Consensus 10 hecalcysitd 20 (36)
T 2jyp_A 10 HECALCYSITD 20 (36)
T ss_dssp TCCSSSTTTTT
T ss_pred chheeEEeecC
Confidence 37999999854
No 183
>2l7x_A Envelope glycoprotein; cytoplasmic tail, viral protein; NMR {Crimean-congo hemorrhagic fever virus}
Probab=27.05 E-value=19 Score=26.86 Aligned_cols=16 Identities=25% Similarity=0.895 Sum_probs=12.3
Q ss_pred ccccCCCCCCCccccc
Q 022965 267 DVLFGNCPYCSEPVAV 282 (289)
Q Consensus 267 ~~i~g~CP~Cr~~i~~ 282 (289)
|-+++-||||-..++-
T Consensus 27 nCs~NiCPYC~nRls~ 42 (77)
T 2l7x_A 27 NCSYNICPYCASRLTS 42 (77)
T ss_dssp HHTTTCCTTTCCCCCT
T ss_pred CCCcccChhhhccCCc
Confidence 3448999999987764
No 184
>2k9h_A Glycoprotein; hantavirus, zinc finger, CCHC, metal binding protein; NMR {Andes virus}
Probab=26.94 E-value=19 Score=25.48 Aligned_cols=13 Identities=38% Similarity=0.989 Sum_probs=10.2
Q ss_pred cCCCCCCCccccc
Q 022965 270 FGNCPYCSEPVAV 282 (289)
Q Consensus 270 ~g~CP~Cr~~i~~ 282 (289)
.|.||||-.+...
T Consensus 28 ~gqCPYC~~~~e~ 40 (57)
T 2k9h_A 28 NGQCPYCMTITEA 40 (57)
T ss_dssp TTBCTTTCCBCCS
T ss_pred CCCCCcccCcCCc
Confidence 6999999886543
No 185
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=25.59 E-value=15 Score=28.20 Aligned_cols=13 Identities=31% Similarity=0.856 Sum_probs=10.6
Q ss_pred cCCCCCCCccccc
Q 022965 270 FGNCPYCSEPVAV 282 (289)
Q Consensus 270 ~g~CP~Cr~~i~~ 282 (289)
.+.||.|.+++.-
T Consensus 47 g~~CPvCgs~l~~ 59 (112)
T 1l8d_A 47 KGKCPVCGRELTD 59 (112)
T ss_dssp SEECTTTCCEECH
T ss_pred CCCCCCCCCcCCH
Confidence 5789999998763
No 186
>1x4i_A Inhibitor of growth protein 3; structural genomics, PHD domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=25.13 E-value=8.3 Score=28.02 Aligned_cols=38 Identities=32% Similarity=0.638 Sum_probs=25.2
Q ss_pred cccccCCCC-CCcchhhHHHHHHhhhccCccccccccCCCCCCCcccc
Q 022965 235 DYTCDNSSC-SKAFHSVCLGDWLRSITTTRQSYDVLFGNCPYCSEPVA 281 (289)
Q Consensus 235 d~~C~n~~C-~h~FH~~CL~eWL~~l~~~r~sF~~i~g~CP~Cr~~i~ 281 (289)
-.-|++-.| ..-||..|+- |...+. -.-.||.|+....
T Consensus 19 MI~CD~cdC~~~WfH~~Cvg--l~~~p~-------~~w~Cp~C~~~~~ 57 (70)
T 1x4i_A 19 MVGCDNQDCPIEWFHYGCVG--LTEAPK-------GKWYCPQCTAAMK 57 (70)
T ss_dssp EECCSCTTCSCCCEEHHHHT--CSSCCS-------SCCCCHHHHHHHH
T ss_pred EeEeCCCCCCccCCcccccc--cCcCCC-------CCEECCCCCcccc
Confidence 456877667 4789999996 333221 1446999987653
No 187
>2lcq_A Putative toxin VAPC6; PIN domain, Zn ribbon domain, ribosome biogenesis, metal BIN protein; NMR {Pyrococcus horikoshii}
Probab=23.97 E-value=24 Score=28.90 Aligned_cols=27 Identities=33% Similarity=0.886 Sum_probs=18.0
Q ss_pred cccccCCCCCCcchhhHHHHHHhhhccCccccccccCCCCCCCccc
Q 022965 235 DYTCDNSSCSKAFHSVCLGDWLRSITTTRQSYDVLFGNCPYCSEPV 280 (289)
Q Consensus 235 d~~C~n~~C~h~FH~~CL~eWL~~l~~~r~sF~~i~g~CP~Cr~~i 280 (289)
...| ..||+.|-.. .. ...||.|..++
T Consensus 132 ~y~C--~~Cg~~~~~~------~~-----------~~~Cp~CG~~~ 158 (165)
T 2lcq_A 132 RYVC--IGCGRKFSTL------PP-----------GGVCPDCGSKV 158 (165)
T ss_dssp CEEE--SSSCCEESSC------CG-----------GGBCTTTCCBE
T ss_pred EEEC--CCCCCcccCC------CC-----------CCcCCCCCCcc
Confidence 4567 7788888543 11 35899998874
No 188
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=22.48 E-value=70 Score=26.40 Aligned_cols=51 Identities=25% Similarity=0.485 Sum_probs=33.2
Q ss_pred CCCcccccccccccccchhhccccCCCCCcccccCCCCCCcchhhHHHHHHh-----hh--ccCccccccccCCCCCCCc
Q 022965 206 NYQQVECGICYAQFLPIDEELGAKSGGGTDYTCDNSSCSKAFHSVCLGDWLR-----SI--TTTRQSYDVLFGNCPYCSE 278 (289)
Q Consensus 206 ~~~~~eC~ICy~~~l~~d~~~~~~~g~~Pd~~C~n~~C~h~FH~~CL~eWL~-----~l--~~~r~sF~~i~g~CP~Cr~ 278 (289)
+..+..|.||-.- |. -.-|+ .|-+.||..||..=|. .+ +.. .=.||.|+.
T Consensus 60 Dg~~d~C~vC~~G------------G~--LlcCD--~Cpr~Fh~~Cl~p~l~~~~l~~i~~p~~-------~W~C~~C~~ 116 (142)
T 2lbm_A 60 DGMDEQCRWCAEG------------GN--LICCD--FCHNAFCKKCILRNLGRKELSTIMDENN-------QWYCYICHP 116 (142)
T ss_dssp TSCBCSCSSSCCC------------SS--EEECS--SSCCEEEHHHHHHHTCHHHHHHHHTSTT-------CCCCTTTCC
T ss_pred CCCCCeecccCCC------------Cc--EEeCC--CCCCeeeHhhcCCCCChhhhhhcccCCC-------CCEeecccC
Confidence 4456789999753 22 23564 7999999999975432 11 222 457999985
Q ss_pred c
Q 022965 279 P 279 (289)
Q Consensus 279 ~ 279 (289)
+
T Consensus 117 ~ 117 (142)
T 2lbm_A 117 E 117 (142)
T ss_dssp C
T ss_pred c
Confidence 4
No 189
>2co8_A NEDD9 interacting protein with calponin homology and LIM domains; zinc finger protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=21.92 E-value=73 Score=22.75 Aligned_cols=30 Identities=17% Similarity=0.451 Sum_probs=18.6
Q ss_pred CcccccccccccccchhhccccCCCCCcccccCCCCCCcchhhHH
Q 022965 208 QQVECGICYAQFLPIDEELGAKSGGGTDYTCDNSSCSKAFHSVCL 252 (289)
Q Consensus 208 ~~~eC~ICy~~~l~~d~~~~~~~g~~Pd~~C~n~~C~h~FH~~CL 252 (289)
....|+-|-..+...+ .+ ..=++.||..|+
T Consensus 14 ~~~~C~~C~~~I~~~e------------~v---~a~~~~wH~~CF 43 (82)
T 2co8_A 14 AGDLCALCGEHLYVLE------------RL---CVNGHFFHRSCF 43 (82)
T ss_dssp SSCBCSSSCCBCCTTT------------BC---CBTTBCCBTTTC
T ss_pred CCCCCcccCCCcccce------------EE---EECCCeeCCCcC
Confidence 4567999998764111 11 122668998887
No 190
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*
Probab=21.91 E-value=37 Score=27.96 Aligned_cols=54 Identities=26% Similarity=0.463 Sum_probs=30.9
Q ss_pred CCcccccccccccccchhhccccCCCCCcccccCCCCCCcchhhHHHHHHhhhccCccccccccCCCCCCCcc
Q 022965 207 YQQVECGICYAQFLPIDEELGAKSGGGTDYTCDNSSCSKAFHSVCLGDWLRSITTTRQSYDVLFGNCPYCSEP 279 (289)
Q Consensus 207 ~~~~eC~ICy~~~l~~d~~~~~~~g~~Pd~~C~n~~C~h~FH~~CL~eWL~~l~~~r~sF~~i~g~CP~Cr~~ 279 (289)
+...-| ||-.... + +| .-.-|+ .|..-||..|+.---... . ..-.-.||.|+..
T Consensus 6 ~~~~~C-~C~~~~~---~-----~~--~mi~Cd--~C~~WfH~~Cv~~~~~~~-~-----~~~~~~C~~C~~~ 59 (174)
T 2ri7_A 6 DTKLYC-ICKTPED---E-----SK--FYIGCD--RCQNWYHGRCVGILQSEA-E-----LIDEYVCPQCQST 59 (174)
T ss_dssp -CCEET-TTTEECC---T-----TS--CEEECT--TTCCEEEHHHHTCCHHHH-T-----TCSSCCCHHHHHH
T ss_pred CCCcEe-eCCCCCC---C-----CC--CEeECC--CCCchhChhhcCCchhhc-c-----CccCeecCCCcch
Confidence 455678 9977531 0 12 235685 799999999993110000 0 0114589999864
Done!