BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 022966
(289 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2B5F|A Chain A, Crystal Structure Of The Spinach Aquaporin Sopip2;1 In An
Open Conformation To 3.9 Resolution
pdb|2B5F|B Chain B, Crystal Structure Of The Spinach Aquaporin Sopip2;1 In An
Open Conformation To 3.9 Resolution
pdb|2B5F|C Chain C, Crystal Structure Of The Spinach Aquaporin Sopip2;1 In An
Open Conformation To 3.9 Resolution
pdb|2B5F|D Chain D, Crystal Structure Of The Spinach Aquaporin Sopip2;1 In An
Open Conformation To 3.9 Resolution
Length = 303
Score = 423 bits (1088), Expect = e-119, Method: Compositional matrix adjust.
Identities = 210/269 (78%), Positives = 224/269 (83%), Gaps = 6/269 (2%)
Query: 20 KDYHDPPPAPLIDFEELGKWSFYRAVIAEFIAXXXXXXXXXXXXIGYKSQTDPNLNTDQC 79
KDY DPPPAP D EL WSF+RA IAEFIA IG+ +T C
Sbjct: 16 KDYVDPPPAPFFDLGELKLWSFWRAAIAEFIATLLFLYITVATVIGHSKETV------VC 69
Query: 80 GGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLGRKVSLIRALLYMVAQCLG 139
G VG+LGIAWAFGGMIF+LVYCTAGISGGHINPAVTFGLFL RKVSL+RAL+YM+AQCLG
Sbjct: 70 GSVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLLRALVYMIAQCLG 129
Query: 140 AICGCGFVKAFQKSYYNRYGGGANELADGYNKGTGLGAEIIGTFVLVYTVFSATDPKRSA 199
AICG G VKAF K YN++GGGAN +A GYNKGT LGAEIIGTFVLVYTVFSATDPKRSA
Sbjct: 130 AICGVGLVKAFMKGPYNQFGGGANSVALGYNKGTALGAEIIGTFVLVYTVFSATDPKRSA 189
Query: 200 RDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNKEKAWDDQWIFWVGP 259
RDSHVP+LAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVI+N K WDDQWIFWVGP
Sbjct: 190 RDSHVPILAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIFNSNKVWDDQWIFWVGP 249
Query: 260 FIGAFVAAFYHQYILRAAAIKALGSFRSN 288
FIGA VAA YHQY+LRAAAIKALGSFRSN
Sbjct: 250 FIGAAVAAAYHQYVLRAAAIKALGSFRSN 278
>pdb|1Z98|A Chain A, Crystal Structure Of The Spinach Aquaporin Sopip2;1 In A
Closed Conformation
pdb|1Z98|M Chain M, Crystal Structure Of The Spinach Aquaporin Sopip2;1 In A
Closed Conformation
Length = 281
Score = 422 bits (1086), Expect = e-119, Method: Compositional matrix adjust.
Identities = 210/269 (78%), Positives = 224/269 (83%), Gaps = 6/269 (2%)
Query: 20 KDYHDPPPAPLIDFEELGKWSFYRAVIAEFIAXXXXXXXXXXXXIGYKSQTDPNLNTDQC 79
KDY DPPPAP D EL WSF+RA IAEFIA IG+ +T C
Sbjct: 16 KDYVDPPPAPFFDLGELKLWSFWRAAIAEFIATLLFLYITVATVIGHSKETV------VC 69
Query: 80 GGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLGRKVSLIRALLYMVAQCLG 139
G VG+LGIAWAFGGMIF+LVYCTAGISGGHINPAVTFGLFL RKVSL+RAL+YM+AQCLG
Sbjct: 70 GSVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLLRALVYMIAQCLG 129
Query: 140 AICGCGFVKAFQKSYYNRYGGGANELADGYNKGTGLGAEIIGTFVLVYTVFSATDPKRSA 199
AICG G VKAF K YN++GGGAN +A GYNKGT LGAEIIGTFVLVYTVFSATDPKRSA
Sbjct: 130 AICGVGLVKAFMKGPYNQFGGGANSVALGYNKGTALGAEIIGTFVLVYTVFSATDPKRSA 189
Query: 200 RDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNKEKAWDDQWIFWVGP 259
RDSHVP+LAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVI+N K WDDQWIFWVGP
Sbjct: 190 RDSHVPILAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIFNSNKVWDDQWIFWVGP 249
Query: 260 FIGAFVAAFYHQYILRAAAIKALGSFRSN 288
FIGA VAA YHQY+LRAAAIKALGSFRSN
Sbjct: 250 FIGAAVAAAYHQYVLRAAAIKALGSFRSN 278
>pdb|3CLL|A Chain A, Crystal Structure Of The Spinach Aquaporin Sopip2;1 S115e
Mutant
Length = 300
Score = 421 bits (1082), Expect = e-118, Method: Compositional matrix adjust.
Identities = 209/269 (77%), Positives = 223/269 (82%), Gaps = 6/269 (2%)
Query: 20 KDYHDPPPAPLIDFEELGKWSFYRAVIAEFIAXXXXXXXXXXXXIGYKSQTDPNLNTDQC 79
KDY DPPPAP D EL WSF+RA IAEFIA IG+ +T C
Sbjct: 35 KDYVDPPPAPFFDLGELKLWSFWRAAIAEFIATLLFLYITVATVIGHSKETV------VC 88
Query: 80 GGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLGRKVSLIRALLYMVAQCLG 139
G VG+LGIAWAFGGMIF+LVYCTAGISGGHINPAVTFGLFL RKV L+RAL+YM+AQCLG
Sbjct: 89 GSVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVELLRALVYMIAQCLG 148
Query: 140 AICGCGFVKAFQKSYYNRYGGGANELADGYNKGTGLGAEIIGTFVLVYTVFSATDPKRSA 199
AICG G VKAF K YN++GGGAN +A GYNKGT LGAEIIGTFVLVYTVFSATDPKRSA
Sbjct: 149 AICGVGLVKAFMKGPYNQFGGGANSVALGYNKGTALGAEIIGTFVLVYTVFSATDPKRSA 208
Query: 200 RDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNKEKAWDDQWIFWVGP 259
RDSHVP+LAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVI+N K WDDQWIFWVGP
Sbjct: 209 RDSHVPILAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIFNSNKVWDDQWIFWVGP 268
Query: 260 FIGAFVAAFYHQYILRAAAIKALGSFRSN 288
FIGA VAA YHQY+LRAAAIKALGSFRSN
Sbjct: 269 FIGAAVAAAYHQYVLRAAAIKALGSFRSN 297
>pdb|3CN6|A Chain A, Crystal Structure Of The Spinach Aquaporin Sopip2;1 S274e
Mutant
pdb|3CN6|B Chain B, Crystal Structure Of The Spinach Aquaporin Sopip2;1 S274e
Mutant
Length = 304
Score = 421 bits (1081), Expect = e-118, Method: Compositional matrix adjust.
Identities = 209/269 (77%), Positives = 223/269 (82%), Gaps = 6/269 (2%)
Query: 20 KDYHDPPPAPLIDFEELGKWSFYRAVIAEFIAXXXXXXXXXXXXIGYKSQTDPNLNTDQC 79
KDY DPPPAP D EL WSF+RA IAEFIA IG+ +T C
Sbjct: 39 KDYVDPPPAPFFDLGELKLWSFWRAAIAEFIATLLFLYITVATVIGHSKETV------VC 92
Query: 80 GGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLGRKVSLIRALLYMVAQCLG 139
G VG+LGIAWAFGGMIF+LVYCTAGISGGHINPAVTFGLFL RKVSL+RAL+YM+AQCLG
Sbjct: 93 GSVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLLRALVYMIAQCLG 152
Query: 140 AICGCGFVKAFQKSYYNRYGGGANELADGYNKGTGLGAEIIGTFVLVYTVFSATDPKRSA 199
AICG G VKAF K YN++GGGAN +A GYNKGT LGAEIIGTFVLVYTVFSATDPKRSA
Sbjct: 153 AICGVGLVKAFMKGPYNQFGGGANSVALGYNKGTALGAEIIGTFVLVYTVFSATDPKRSA 212
Query: 200 RDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNKEKAWDDQWIFWVGP 259
RDSHVP+LAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVI+N K WDDQWIFWVGP
Sbjct: 213 RDSHVPILAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIFNSNKVWDDQWIFWVGP 272
Query: 260 FIGAFVAAFYHQYILRAAAIKALGSFRSN 288
FIGA VAA YHQY+LRAAAIKALG FRSN
Sbjct: 273 FIGAAVAAAYHQYVLRAAAIKALGEFRSN 301
>pdb|3CN5|A Chain A, Crystal Structure Of The Spinach Aquaporin Sopip2;1 S115e,
S274e Mutant
Length = 304
Score = 419 bits (1078), Expect = e-118, Method: Compositional matrix adjust.
Identities = 208/269 (77%), Positives = 222/269 (82%), Gaps = 6/269 (2%)
Query: 20 KDYHDPPPAPLIDFEELGKWSFYRAVIAEFIAXXXXXXXXXXXXIGYKSQTDPNLNTDQC 79
KDY DPPPAP D EL WSF+RA IAEFIA IG+ +T C
Sbjct: 39 KDYVDPPPAPFFDLGELKLWSFWRAAIAEFIATLLFLYITVATVIGHSKETV------VC 92
Query: 80 GGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLGRKVSLIRALLYMVAQCLG 139
G VG+LGIAWAFGGMIF+LVYCTAGISGGHINPAVTFGLFL RKV L+RAL+YM+AQCLG
Sbjct: 93 GSVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVELLRALVYMIAQCLG 152
Query: 140 AICGCGFVKAFQKSYYNRYGGGANELADGYNKGTGLGAEIIGTFVLVYTVFSATDPKRSA 199
AICG G VKAF K YN++GGGAN +A GYNKGT LGAEIIGTFVLVYTVFSATDPKRSA
Sbjct: 153 AICGVGLVKAFMKGPYNQFGGGANSVALGYNKGTALGAEIIGTFVLVYTVFSATDPKRSA 212
Query: 200 RDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNKEKAWDDQWIFWVGP 259
RDSHVP+LAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVI+N K WDDQWIFWVGP
Sbjct: 213 RDSHVPILAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIFNSNKVWDDQWIFWVGP 272
Query: 260 FIGAFVAAFYHQYILRAAAIKALGSFRSN 288
FIGA VAA YHQY+LRAAAIKALG FRSN
Sbjct: 273 FIGAAVAAAYHQYVLRAAAIKALGEFRSN 301
>pdb|1FQY|A Chain A, Structure Of Aquaporin-1 At 3.8 A Resolution By Electron
Crystallography
pdb|1IH5|A Chain A, Crystal Structure Of Aquaporin-1
pdb|1H6I|A Chain A, A Refined Structure Of Human Aquaporin 1
Length = 269
Score = 169 bits (428), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 103/241 (42%), Positives = 133/241 (55%), Gaps = 12/241 (4%)
Query: 34 EELGKWSFYRAVIAEFIAXXXXXXXXXXXXIGYKSQTDPNLNTDQCGGVGILGIAWAFGG 93
E K F+RAV+AEF+A +G+K N Q + ++ AFG
Sbjct: 3 SEFKKKLFWRAVVAEFLATTLFVFISIGSALGFKYPVGNNQTAVQDN----VKVSLAFGL 58
Query: 94 MIFILVYCTAGISGGHINPAVTFGLFLGRKVSLIRALLYMVAQCLGAICGCGFVKAFQKS 153
I L ISG H+NPAVT GL L ++S+ RAL+Y++AQC+GAI + S
Sbjct: 59 SIATLAQSVGHISGAHLNPAVTLGLLLSCQISIFRALMYIIAQCVGAIVATAILSGITSS 118
Query: 154 YYNRYGGGANELADGYNKGTGLGAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIG 213
G N+LADG N G GLG EIIGT LV V + TD +R RD + APL IG
Sbjct: 119 LTGN-SLGRNDLADGVNSGQGLGIEIIGTLQLVLCVLATTDRRR--RD--LGGSAPLAIG 173
Query: 214 FAVFMVHLATIPITGTGINPARSFGAAVIYNKEKAWDDQWIFWVGPFIGAFVAAFYHQYI 273
+V + HL I TG GINPARSFG+AVI + + + WIFWVGPFIG +A + +I
Sbjct: 174 LSVALGHLLAIDYTGCGINPARSFGSAVITHN---FSNHWIFWVGPFIGGALAVLIYDFI 230
Query: 274 L 274
L
Sbjct: 231 L 231
>pdb|1J4N|A Chain A, Crystal Structure Of The Aqp1 Water Channel
Length = 271
Score = 165 bits (417), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 103/242 (42%), Positives = 135/242 (55%), Gaps = 12/242 (4%)
Query: 34 EELGKWSFYRAVIAEFIAXXXXXXXXXXXXIGYKSQTDPNLNTDQCGGV-GILGIAWAFG 92
E K F+RAV+AEF+A +G+ N T G V + ++ AFG
Sbjct: 3 SEFKKKLFWRAVVAEFLAMILFIFISIGSALGFHYPIKSNQTT---GAVQDNVKVSLAFG 59
Query: 93 GMIFILVYCTAGISGGHINPAVTFGLFLGRKVSLIRALLYMVAQCLGAICGCGFVKAFQK 152
I L ISG H+NPAVT GL L ++S++RA++Y++AQC+GAI +
Sbjct: 60 LSIATLAQSVGHISGAHLNPAVTLGLLLSCQISVLRAIMYIIAQCVGAIVATAILSGITS 119
Query: 153 SYYNRYGGGANELADGYNKGTGLGAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPI 212
S + G N LA G N G GLG EIIGT LV V + TD +R RD + PL I
Sbjct: 120 SLPDN-SLGLNALAPGVNSGQGLGIEIIGTLQLVLCVLATTDRRR--RD--LGGSGPLAI 174
Query: 213 GFAVFMVHLATIPITGTGINPARSFGAAVIYNKEKAWDDQWIFWVGPFIGAFVAAFYHQY 272
GF+V + HL I TG GINPARSFG++VI + + D WIFWVGPFIGA +A + +
Sbjct: 175 GFSVALGHLLAIDYTGCGINPARSFGSSVITHN---FQDHWIFWVGPFIGAALAVLIYDF 231
Query: 273 IL 274
IL
Sbjct: 232 IL 233
>pdb|2D57|A Chain A, Double Layered 2d Crystal Structure Of Aquaporin-4
(Aqp4m23) At 3.2 A Resolution By Electron
Crystallography
Length = 301
Score = 144 bits (362), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 92/245 (37%), Positives = 134/245 (54%), Gaps = 17/245 (6%)
Query: 30 LIDFEELGKWSFYRAVIAEFIAXXXXXXXXXXXXIGYKSQTDPNLNTDQCGGVGILGIAW 89
++ F+ + +F++AV AEF+A I + +P L D ++ I+
Sbjct: 1 MVAFKGVWTQAFWKAVTAEFLAMLIFVLLSVGSTINWGGSENP-LPVD------MVLISL 53
Query: 90 AFGGMIFILVYCTAGISGGHINPAVTFGLFLGRKVSLIRALLYMVAQCLGAICGCGFVKA 149
FG I +V C ISGGHINPAVT + RK+S+ +++ Y+ AQCLGAI G G +
Sbjct: 54 CFGLSIATMVQCFGHISGGHINPAVTVAMVCTRKISIAKSVFYITAQCLGAIIGAGIL-- 111
Query: 150 FQKSYYNRYGG-GANELADGYNKGTGLGAEIIGTFVLVYTVFSATDPKRSARDSHVPVLA 208
+ + + GG G + G GL E+I TF LV+T+F++ D KR+ V
Sbjct: 112 YLVTPPSVVGGLGVTTVHGNLTAGHGLLVELIITFQLVFTIFASCDSKRTDVTGSV---- 167
Query: 209 PLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNKEKAWDDQWIFWVGPFIGAFVAAF 268
L IGF+V + HL I TG +NPARSFG AVI W++ WI+WVGP IGA +A
Sbjct: 168 ALAIGFSVAIGHLFAINYTGASMNPARSFGPAVIMGN---WENHWIYWVGPIIGAVLAGA 224
Query: 269 YHQYI 273
++Y+
Sbjct: 225 LYEYV 229
>pdb|2ZZ9|A Chain A, Structure Of Aquaporin-4 S180d Mutant At 2.8 A Resolution
By Electron Crystallography
Length = 301
Score = 144 bits (362), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 92/245 (37%), Positives = 134/245 (54%), Gaps = 17/245 (6%)
Query: 30 LIDFEELGKWSFYRAVIAEFIAXXXXXXXXXXXXIGYKSQTDPNLNTDQCGGVGILGIAW 89
++ F+ + +F++AV AEF+A I + +P L D ++ I+
Sbjct: 1 MVAFKGVWTQAFWKAVTAEFLAMLIFVLLSVGSTINWGGSENP-LPVD------MVLISL 53
Query: 90 AFGGMIFILVYCTAGISGGHINPAVTFGLFLGRKVSLIRALLYMVAQCLGAICGCGFVKA 149
FG I +V C ISGGHINPAVT + RK+S+ +++ Y+ AQCLGAI G G +
Sbjct: 54 CFGLSIATMVQCFGHISGGHINPAVTVAMVCTRKISIAKSVFYITAQCLGAIIGAGIL-- 111
Query: 150 FQKSYYNRYGG-GANELADGYNKGTGLGAEIIGTFVLVYTVFSATDPKRSARDSHVPVLA 208
+ + + GG G + G GL E+I TF LV+T+F++ D KR+ V
Sbjct: 112 YLVTPPSVVGGLGVTTVHGNLTAGHGLLVELIITFQLVFTIFASCDDKRTDVTGSV---- 167
Query: 209 PLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNKEKAWDDQWIFWVGPFIGAFVAAF 268
L IGF+V + HL I TG +NPARSFG AVI W++ WI+WVGP IGA +A
Sbjct: 168 ALAIGFSVAIGHLFAINYTGASMNPARSFGPAVIMGN---WENHWIYWVGPIIGAVLAGA 224
Query: 269 YHQYI 273
++Y+
Sbjct: 225 LYEYV 229
>pdb|3IYZ|A Chain A, Structure Of Aquaporin-4 S180d Mutant At 10.0 A Resolution
From Electron Micrograph
Length = 340
Score = 144 bits (362), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 92/245 (37%), Positives = 134/245 (54%), Gaps = 17/245 (6%)
Query: 30 LIDFEELGKWSFYRAVIAEFIAXXXXXXXXXXXXIGYKSQTDPNLNTDQCGGVGILGIAW 89
++ F+ + +F++AV AEF+A I + +P L D ++ I+
Sbjct: 40 MVAFKGVWTQAFWKAVTAEFLAMLIFVLLSVGSTINWGGSENP-LPVD------MVLISL 92
Query: 90 AFGGMIFILVYCTAGISGGHINPAVTFGLFLGRKVSLIRALLYMVAQCLGAICGCGFVKA 149
FG I +V C ISGGHINPAVT + RK+S+ +++ Y+ AQCLGAI G G +
Sbjct: 93 CFGLSIATMVQCFGHISGGHINPAVTVAMVCTRKISIAKSVFYITAQCLGAIIGAGIL-- 150
Query: 150 FQKSYYNRYGG-GANELADGYNKGTGLGAEIIGTFVLVYTVFSATDPKRSARDSHVPVLA 208
+ + + GG G + G GL E+I TF LV+T+F++ D KR+ V
Sbjct: 151 YLVTPPSVVGGLGVTTVHGNLTAGHGLLVELIITFQLVFTIFASCDDKRTDVTGSV---- 206
Query: 209 PLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNKEKAWDDQWIFWVGPFIGAFVAAF 268
L IGF+V + HL I TG +NPARSFG AVI W++ WI+WVGP IGA +A
Sbjct: 207 ALAIGFSVAIGHLFAINYTGASMNPARSFGPAVIMGN---WENHWIYWVGPIIGAVLAGA 263
Query: 269 YHQYI 273
++Y+
Sbjct: 264 LYEYV 268
>pdb|3GD8|A Chain A, Crystal Structure Of Human Aquaporin 4 At 1.8 And Its
Mechanism Of Conductance
Length = 223
Score = 139 bits (349), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 90/235 (38%), Positives = 128/235 (54%), Gaps = 17/235 (7%)
Query: 40 SFYRAVIAEFIAXXXXXXXXXXXXIGYKSQTDPNLNTDQCGGVGILGIAWAFGGMIFILV 99
+F++AV AEF+A I + P L D ++ I+ FG I +V
Sbjct: 2 AFWKAVTAEFLAMLIFVLLSLGSTINWGGTEKP-LPVD------MVLISLCFGLSIATMV 54
Query: 100 YCTAGISGGHINPAVTFGLFLGRKVSLIRALLYMVAQCLGAICGCGFVKAFQKSYYNRYG 159
C ISGGHINPAVT + RK+S+ +++ Y+ AQCLGAI G G + + + + G
Sbjct: 55 QCFGHISGGHINPAVTVAMVCTRKISIAKSVFYIAAQCLGAIIGAGIL--YLVTPPSVVG 112
Query: 160 G-GANELADGYNKGTGLGAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFM 218
G G + G GL E+I TF LV+T+F++ D KR+ + L IGF+V +
Sbjct: 113 GLGVTMVHGNLTAGHGLLVELIITFQLVFTIFASCDSKRTDVTGSI----ALAIGFSVAI 168
Query: 219 VHLATIPITGTGINPARSFGAAVIYNKEKAWDDQWIFWVGPFIGAFVAAFYHQYI 273
HL I TG +NPARSFG AVI W++ WI+WVGP IGA +A ++Y+
Sbjct: 169 GHLFAINYTGASMNPARSFGPAVIMGN---WENHWIYWVGPIIGAVLAGGLYEYV 220
>pdb|3D9S|A Chain A, Human Aquaporin 5 (Aqp5) - High Resolution X-Ray Structure
pdb|3D9S|B Chain B, Human Aquaporin 5 (Aqp5) - High Resolution X-Ray Structure
pdb|3D9S|C Chain C, Human Aquaporin 5 (Aqp5) - High Resolution X-Ray Structure
pdb|3D9S|D Chain D, Human Aquaporin 5 (Aqp5) - High Resolution X-Ray Structure
Length = 266
Score = 126 bits (317), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 88/242 (36%), Positives = 125/242 (51%), Gaps = 20/242 (8%)
Query: 34 EELGKWSFYRAVIAEFIAXXXXXXXXXXXXIGYKSQTDPNLNTDQCGGVGILGIAWAFGG 93
+E+ +F +AV AEF+A + + S IL IA AFG
Sbjct: 4 KEVCSVAFLKAVFAEFLATLIFVFFGLGSALKWPSALPT-----------ILQIALAFGL 52
Query: 94 MIFILVYCTAGISGGHINPAVTFGLFLGRKVSLIRALLYMVAQCLGAICGCGFVKAFQKS 153
I L +SGGHINPA+T L +G ++SL+RA Y+ AQ +GAI G G +
Sbjct: 53 AIGTLAQALGPVSGGHINPAITLALLVGNQISLLRAFFYVAAQLVGAIAGAGILYGV-AP 111
Query: 154 YYNRYGGGANELADGYNKGTGLGAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAP-LPI 212
R N L + +G + E+I TF L +F++TD +R++ PV +P L I
Sbjct: 112 LNARGNLAVNALNNNTTQGQAMVVELILTFQLALCIFASTDSRRTS-----PVGSPALSI 166
Query: 213 GFAVFMVHLATIPITGTGINPARSFGAAVIYNKEKAWDDQWIFWVGPFIGAFVAAFYHQY 272
G +V + HL I TG +NPARSFG AV+ N+ W+FWVGP +GA +AA + Y
Sbjct: 167 GLSVTLGHLVGIYFTGCSMNPARSFGPAVVMNRFS--PAHWVFWVGPIVGAVLAAILYFY 224
Query: 273 IL 274
+L
Sbjct: 225 LL 226
>pdb|1YMG|A Chain A, The Channel Architecture Of Aquaporin O At 2.2 Angstrom
Resolution
pdb|2B6P|A Chain A, X-Ray Structure Of Lens Aquaporin-0 (Aqp0) (Lens Mip) In
An Open Pore State
pdb|2C32|A Chain A, Co-Axial Association Of Recombinant Eye Lens Aquaporin-0
Observed In Loosely Packed 3d-Crystals
Length = 263
Score = 121 bits (303), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 82/240 (34%), Positives = 122/240 (50%), Gaps = 19/240 (7%)
Query: 35 ELGKWSFYRAVIAEFIAXXXXXXXXXXXXIGYKSQTDPNLNTDQCGGVGILGIAWAFGGM 94
EL SF+RA+ AEF A +G + P G + +L +A AFG
Sbjct: 3 ELRSASFWRAICAEFFASLFYVFFG----LGASLRWAP-------GPLHVLQVALAFGLA 51
Query: 95 IFILVYCTAGISGGHINPAVTFGLFLGRKVSLIRALLYMVAQCLGAICGCGFVKAFQKSY 154
+ LV ISG H+NPAVTF +G ++SL+RA+ YMVAQ LGA+ G + +
Sbjct: 52 LATLVQAVGHISGAHVNPAVTFAFLVGSQMSLLRAICYMVAQLLGAVAGAAVLYSVTPPA 111
Query: 155 YNRYGGGANELADGYNKGTGLGAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGF 214
R N L G + G EI T V +F+ D +R+ R V L +GF
Sbjct: 112 V-RGNLALNTLHPGVSVGQATIVEIFLTLQFVLCIFATYDERRNGRLGSV----ALAVGF 166
Query: 215 AVFMVHLATIPITGTGINPARSFGAAVIYNKEKAWDDQWIFWVGPFIGAFVAAFYHQYIL 274
++ + HL + TG G+NPARSF A++ + + + W++WVGP IGA + + + ++L
Sbjct: 167 SLTLGHLFGMYYTGAGMNPARSFAPAIL---TRNFTNHWVYWVGPVIGAGLGSLLYDFLL 223
>pdb|2B6O|A Chain A, Electron Crystallographic Structure Of Lens Aquaporin-0
(Aqp0) (Lens Mip) At 1.9a Resolution, In A Closed Pore
State
Length = 263
Score = 119 bits (299), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 81/240 (33%), Positives = 122/240 (50%), Gaps = 19/240 (7%)
Query: 35 ELGKWSFYRAVIAEFIAXXXXXXXXXXXXIGYKSQTDPNLNTDQCGGVGILGIAWAFGGM 94
EL SF+RA+ AEF A +G + P G + +L +A AFG
Sbjct: 3 ELRSASFWRAIFAEFFATLFYVFFG----LGASLRWAP-------GPLHVLQVALAFGLA 51
Query: 95 IFILVYCTAGISGGHINPAVTFGLFLGRKVSLIRALLYMVAQCLGAICGCGFVKAFQKSY 154
+ LV ISG H+NPAVTF +G ++SL+RA+ Y+VAQ LGA+ G + +
Sbjct: 52 LATLVQAVGHISGAHVNPAVTFAFLVGSQMSLLRAICYVVAQLLGAVAGAAVLYSVTPPA 111
Query: 155 YNRYGGGANELADGYNKGTGLGAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGF 214
R N L G + G EI T V +F+ D +R+ R V L +GF
Sbjct: 112 V-RGNLALNTLHPGVSVGQATIVEIFLTLQFVLCIFATYDERRNGRLGSV----ALAVGF 166
Query: 215 AVFMVHLATIPITGTGINPARSFGAAVIYNKEKAWDDQWIFWVGPFIGAFVAAFYHQYIL 274
++ + HL + TG G+NPARSF A++ + + + W++WVGP IGA + + + ++L
Sbjct: 167 SLTLGHLFGMYYTGAGMNPARSFAPAIL---TRNFTNHWVYWVGPVIGAGLGSLLYDFLL 223
>pdb|1SOR|A Chain A, Aquaporin-0 Membrane Junctions Reveal The Structure Of A
Closed Water Pore
Length = 235
Score = 116 bits (291), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 79/235 (33%), Positives = 120/235 (51%), Gaps = 19/235 (8%)
Query: 40 SFYRAVIAEFIAXXXXXXXXXXXXIGYKSQTDPNLNTDQCGGVGILGIAWAFGGMIFILV 99
SF+RA+ AEF A +G + P G + +L +A AFG + LV
Sbjct: 4 SFWRAIFAEFFATLFYVFFG----LGASLRWAP-------GPLHVLQVALAFGLALATLV 52
Query: 100 YCTAGISGGHINPAVTFGLFLGRKVSLIRALLYMVAQCLGAICGCGFVKAFQKSYYNRYG 159
ISG H+NPAVTF +G ++SL+RA+ Y+VAQ LGA+ G + + R
Sbjct: 53 QAVGHISGAHVNPAVTFAFLVGSQMSLLRAICYVVAQLLGAVAGAAVLYSVTPPAV-RGN 111
Query: 160 GGANELADGYNKGTGLGAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMV 219
N L G + G EI T V +F+ D +R+ R V L +GF++ +
Sbjct: 112 LALNTLHPGVSVGQATIVEIFLTLQFVLCIFATYDERRNGRLGSV----ALAVGFSLTLG 167
Query: 220 HLATIPITGTGINPARSFGAAVIYNKEKAWDDQWIFWVGPFIGAFVAAFYHQYIL 274
HL + TG G+NPARSF A++ + + + W++WVGP IGA + + + ++L
Sbjct: 168 HLFGMYYTGAGMNPARSFAPAIL---TRNFTNHWVYWVGPVIGAGLGSLLYDFLL 219
>pdb|3M9I|A Chain A, Electron Crystallographic Structure Of Lens Aquaporin-0
(Aqp Mip) In E. Coli Polar Lipids
Length = 220
Score = 116 bits (290), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 79/235 (33%), Positives = 120/235 (51%), Gaps = 19/235 (8%)
Query: 40 SFYRAVIAEFIAXXXXXXXXXXXXIGYKSQTDPNLNTDQCGGVGILGIAWAFGGMIFILV 99
SF+RA+ AEF A +G + P G + +L +A AFG + LV
Sbjct: 2 SFWRAIFAEFFATLFYVFFG----LGASLRWAP-------GPLHVLQVALAFGLALATLV 50
Query: 100 YCTAGISGGHINPAVTFGLFLGRKVSLIRALLYMVAQCLGAICGCGFVKAFQKSYYNRYG 159
ISG H+NPAVTF +G ++SL+RA+ Y+VAQ LGA+ G + + R
Sbjct: 51 QAVGHISGAHVNPAVTFAFLVGSQMSLLRAICYVVAQLLGAVAGAAVLYSVTPPAV-RGN 109
Query: 160 GGANELADGYNKGTGLGAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMV 219
N L G + G EI T V +F+ D +R+ R V L +GF++ +
Sbjct: 110 LALNTLHPGVSVGQATIVEIFLTLQFVLCIFATYDERRNGRLGSV----ALAVGFSLTLG 165
Query: 220 HLATIPITGTGINPARSFGAAVIYNKEKAWDDQWIFWVGPFIGAFVAAFYHQYIL 274
HL + TG G+NPARSF A++ + + + W++WVGP IGA + + + ++L
Sbjct: 166 HLFGMYYTGAGMNPARSFAPAIL---TRNFTNHWVYWVGPVIGAGLGSLLYDFLL 217
>pdb|2W1P|A Chain A, 1.4 Angstrom Crystal Structure Of P.Pastoris Aquaporin,
Aqy1, In A Closed Conformation At Ph 8.0
pdb|2W2E|A Chain A, 1.15 Angstrom Crystal Structure Of P.Pastoris Aquaporin,
Aqy1, In A Closed Conformation At Ph 3.5
Length = 279
Score = 87.0 bits (214), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 65/186 (34%), Positives = 93/186 (50%), Gaps = 17/186 (9%)
Query: 84 ILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLGRKVSLIRALLYMVAQCLGAICG 143
++ I++ FG + + V+ T +SGG++NPAVT L L R + R +L Q + +
Sbjct: 85 LIMISFGFGFGVMVGVFITYRVSGGNLNPAVTLALVLARAIPPFRGILMAFTQIVAGMAA 144
Query: 144 CGFVKAF---QKSYYNRYGGGANELADGYNKGTGLGAEIIGTFVLVYTVFSATDPKRSAR 200
G A + ++ N GGGA ++ GL E GT +L TV K A
Sbjct: 145 AGAASAMTPGEIAFANALGGGA-------SRTRGLFLEAFGTAILCLTVLMLAVEKHRAT 197
Query: 201 DSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNKEKAWDDQWIFWVGPF 260
AP IG A+ + HL I TG G+NPARSFG AV + WI+W+GP
Sbjct: 198 -----WFAPFVIGIALLIAHLICIYYTGAGLNPARSFGPAVAARSFP--NYHWIYWLGPI 250
Query: 261 IGAFVA 266
+GAF+A
Sbjct: 251 LGAFLA 256
>pdb|1RC2|B Chain B, 2.5 Angstrom Resolution X-Ray Structure Of Aquaporin Z
pdb|1RC2|A Chain A, 2.5 Angstrom Resolution X-Ray Structure Of Aquaporin Z
pdb|2ABM|A Chain A, Crystal Structure Of Aquaporin Z Tetramer Reveals Both
Open And Closed Water-Conducting Channels
pdb|2ABM|B Chain B, Crystal Structure Of Aquaporin Z Tetramer Reveals Both
Open And Closed Water-Conducting Channels
pdb|2ABM|C Chain C, Crystal Structure Of Aquaporin Z Tetramer Reveals Both
Open And Closed Water-Conducting Channels
pdb|2ABM|D Chain D, Crystal Structure Of Aquaporin Z Tetramer Reveals Both
Open And Closed Water-Conducting Channels
pdb|2ABM|E Chain E, Crystal Structure Of Aquaporin Z Tetramer Reveals Both
Open And Closed Water-Conducting Channels
pdb|2ABM|F Chain F, Crystal Structure Of Aquaporin Z Tetramer Reveals Both
Open And Closed Water-Conducting Channels
pdb|2ABM|G Chain G, Crystal Structure Of Aquaporin Z Tetramer Reveals Both
Open And Closed Water-Conducting Channels
pdb|2ABM|H Chain H, Crystal Structure Of Aquaporin Z Tetramer Reveals Both
Open And Closed Water-Conducting Channels
Length = 231
Score = 85.1 bits (209), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 61/187 (32%), Positives = 88/187 (47%), Gaps = 21/187 (11%)
Query: 81 GVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLGRKVSLIRALLYMVAQCLGA 140
G+G G+A AFG + + + ISGGH NPAVT GL+ G + + Y++AQ +G
Sbjct: 33 GIGFAGVALAFGLTVLTMAFAVGHISGGHFNPAVTIGLWAGGRFPAKEVVGYVIAQVVGG 92
Query: 141 ICGC-----------GFVKAFQKSYYNRYGGGANELADGYNKGTGLGAEIIGTFVLVYTV 189
I GF A N YG GY+ + L E++ + + +
Sbjct: 93 IVAAALLYLIASGKTGFDAAASGFASNGYG---EHSPGGYSMLSALVVELVLSAGFLLVI 149
Query: 190 FSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNKEKAW 249
ATD A AP+ IG A+ ++HL +IP+T T +NPARS A I+ A
Sbjct: 150 HGATDKFAPAG------FAPIAIGLALTLIHLISIPVTNTSVNPARS-TAVAIFQGGWAL 202
Query: 250 DDQWIFW 256
+ W FW
Sbjct: 203 EQLWFFW 209
>pdb|2O9F|A Chain A, Crystal Structure Of Aqpz Mutant L170c
pdb|2O9F|B Chain B, Crystal Structure Of Aqpz Mutant L170c
pdb|2O9G|A Chain A, Crystal Structure Of Aqpz Mutant L170c Complexed With
Mercury
Length = 234
Score = 85.1 bits (209), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 61/187 (32%), Positives = 87/187 (46%), Gaps = 21/187 (11%)
Query: 81 GVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLGRKVSLIRALLYMVAQCLGA 140
G+G G+A AFG + + + ISGGH NPAVT GL+ G + + Y++AQ +G
Sbjct: 36 GIGFAGVALAFGLTVLTMAFAVGHISGGHFNPAVTIGLWAGGRFPAKEVVGYVIAQVVGG 95
Query: 141 ICGC-----------GFVKAFQKSYYNRYGGGANELADGYNKGTGLGAEIIGTFVLVYTV 189
I GF A N YG GY+ + L E++ + + +
Sbjct: 96 IVAAALLYLIASGKTGFDAAASGFASNGYG---EHSPGGYSMLSALVVELVLSAGFLLVI 152
Query: 190 FSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNKEKAW 249
ATD A AP+ IG A ++HL +IP+T T +NPARS A I+ A
Sbjct: 153 HGATDKFAPAG------FAPIAIGLACTLIHLISIPVTNTSVNPARS-TAVAIFQGGWAL 205
Query: 250 DDQWIFW 256
+ W FW
Sbjct: 206 EQLWFFW 212
>pdb|2O9D|A Chain A, Crystal Structure Of Aqpz Mutant T183c.
pdb|2O9D|B Chain B, Crystal Structure Of Aqpz Mutant T183c
Length = 234
Score = 83.6 bits (205), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 60/187 (32%), Positives = 87/187 (46%), Gaps = 21/187 (11%)
Query: 81 GVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLGRKVSLIRALLYMVAQCLGA 140
G+G G+A AFG + + + ISGGH NPAVT GL+ G + + Y++AQ +G
Sbjct: 36 GIGFAGVALAFGLTVLTMAFAVGHISGGHFNPAVTIGLWAGGRFPAKEVVGYVIAQVVGG 95
Query: 141 ICGC-----------GFVKAFQKSYYNRYGGGANELADGYNKGTGLGAEIIGTFVLVYTV 189
I GF A N YG GY+ + L E++ + + +
Sbjct: 96 IVAAALLYLIASGKTGFDAAASGFASNGYG---EHSPGGYSMLSALVVELVLSAGFLLVI 152
Query: 190 FSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNKEKAW 249
ATD A AP+ IG A+ ++HL +IP+T +NPARS A I+ A
Sbjct: 153 HGATDKFAPAG------FAPIAIGLALTLIHLISIPVTNCSVNPARS-TAVAIFQGGWAL 205
Query: 250 DDQWIFW 256
+ W FW
Sbjct: 206 EQLWFFW 212
>pdb|2O9E|A Chain A, Crystal Structure Of Aqpz Mutant T183c Complexed With
Mercury
Length = 234
Score = 83.6 bits (205), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 60/187 (32%), Positives = 87/187 (46%), Gaps = 21/187 (11%)
Query: 81 GVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLGRKVSLIRALLYMVAQCLGA 140
G+G G+A AFG + + + ISGGH NPAVT GL+ G + + Y++AQ +G
Sbjct: 36 GIGFAGVALAFGLTVLTMAFAVGHISGGHFNPAVTIGLWAGGRFPAKEVVGYVIAQVVGG 95
Query: 141 ICGC-----------GFVKAFQKSYYNRYGGGANELADGYNKGTGLGAEIIGTFVLVYTV 189
I GF A N YG GY+ + L E++ + + +
Sbjct: 96 IVAAALLYLIASGKTGFDAAASGFASNGYG---EHSPGGYSMLSALVVELVLSAGFLLVI 152
Query: 190 FSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNKEKAW 249
ATD A AP+ IG A+ ++HL +IP+T +NPARS A I+ A
Sbjct: 153 HGATDKFAPAG------FAPIAIGLALTLIHLISIPVTNCSVNPARS-TAVAIFQGGWAL 205
Query: 250 DDQWIFW 256
+ W FW
Sbjct: 206 EQLWFFW 212
>pdb|3NK5|A Chain A, Crystal Structure Of Aqpz Mutant F43w
pdb|3NK5|B Chain B, Crystal Structure Of Aqpz Mutant F43w
Length = 234
Score = 83.6 bits (205), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 60/187 (32%), Positives = 88/187 (47%), Gaps = 21/187 (11%)
Query: 81 GVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLGRKVSLIRALLYMVAQCLGA 140
G+G G+A A+G + + + ISGGH NPAVT GL+ G + + Y++AQ +G
Sbjct: 36 GIGFAGVALAWGLTVLTMAFAVGHISGGHFNPAVTIGLWAGGRFPAKEVVGYVIAQVVGG 95
Query: 141 ICGC-----------GFVKAFQKSYYNRYGGGANELADGYNKGTGLGAEIIGTFVLVYTV 189
I GF A N YG GY+ + L E++ + + +
Sbjct: 96 IVAAALLYLIASGKTGFDAAASGFASNGYG---EHSPGGYSMLSALVVELVLSAGFLLVI 152
Query: 190 FSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNKEKAW 249
ATD A AP+ IG A+ ++HL +IP+T T +NPARS A I+ A
Sbjct: 153 HGATDKFAPAG------FAPIAIGLALTLIHLISIPVTNTSVNPARS-TAVAIFQGGWAL 205
Query: 250 DDQWIFW 256
+ W FW
Sbjct: 206 EQLWFFW 212
>pdb|3LLQ|A Chain A, Aquaporin Structure From Plant Pathogen Agrobacterium
Tumerfaciens
pdb|3LLQ|B Chain B, Aquaporin Structure From Plant Pathogen Agrobacterium
Tumerfaciens
Length = 256
Score = 81.3 bits (199), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 64/188 (34%), Positives = 97/188 (51%), Gaps = 13/188 (6%)
Query: 81 GVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLGRKVSLIRALLYMVAQCLGA 140
G+G G+A AFG + + Y GISGGH NPAV+ GL + + + Y++AQ GA
Sbjct: 61 GIGFTGVALAFGLTVLTMAYAVGGISGGHFNPAVSVGLTVAGRFPASSLVPYVIAQVAGA 120
Query: 141 ICGCG--FVKAFQKSYYNRYGGGANELAD----GYNKGTGLGAEIIGTFVLVYTVFSATD 194
I +V A K+ + G +N + GY+ + L EII T + + +T
Sbjct: 121 IVAAAALYVIATGKAGIDLGGFASNGYGEHSPGGYSLVSALLIEIILTAFFLIVILGSTH 180
Query: 195 PKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNKEKAWDDQWI 254
+ A AP+ IG A+ ++HL +IP+T T +NPARS G A ++ A W+
Sbjct: 181 GRVPAG------FAPIAIGLALTLIHLISIPVTNTSVNPARSTGQA-LFVGGWALQQLWL 233
Query: 255 FWVGPFIG 262
FW+ P +G
Sbjct: 234 FWLAPIVG 241
>pdb|3NKA|A Chain A, Crystal Structure Of Aqpz H174g,T183f
pdb|3NKA|B Chain B, Crystal Structure Of Aqpz H174g,T183f
Length = 234
Score = 78.2 bits (191), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 59/187 (31%), Positives = 86/187 (45%), Gaps = 21/187 (11%)
Query: 81 GVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLGRKVSLIRALLYMVAQCLGA 140
G+G G+A AFG + + + ISGGH NPAVT GL+ G + + Y++AQ +G
Sbjct: 36 GIGFAGVALAFGLTVLTMAFAVGHISGGHFNPAVTIGLWAGGRFPAKEVVGYVIAQVVGG 95
Query: 141 ICGC-----------GFVKAFQKSYYNRYGGGANELADGYNKGTGLGAEIIGTFVLVYTV 189
I GF A N YG GY+ + L E++ + + +
Sbjct: 96 IVAAALLYLIASGKTGFDAAASGFASNGYG---EHSPGGYSMLSALVVELVLSAGFLLVI 152
Query: 190 FSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNKEKAW 249
ATD A AP+ IG A+ ++ L +IP+T +NPARS A I+ A
Sbjct: 153 HGATDKFAPAG------FAPIAIGLALTLIGLISIPVTNFSVNPARS-TAVAIFQGGWAL 205
Query: 250 DDQWIFW 256
+ W FW
Sbjct: 206 EQLWFFW 212
>pdb|2EVU|A Chain A, Crystal Structure Of Aquaporin Aqpm At 2.3a Resolution
pdb|2F2B|A Chain A, Crystal Structure Of Integral Membrane Protein Aquaporin
Aqpm At 1.68a Resolution
Length = 246
Score = 77.4 bits (189), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 62/193 (32%), Positives = 96/193 (49%), Gaps = 9/193 (4%)
Query: 85 LGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLGRKVSLIRALLYMVAQCLGAICGC 144
+ I AFG I +Y ISG HINPAVT GL+ +K + Y++AQ LGA G
Sbjct: 56 VAIGLAFGFAIAASIYALGNISGCHINPAVTIGLWSVKKFPGREVVPYIIAQLLGAAFGS 115
Query: 145 G-FVKAFQKSYYNRYGGGANELADGYNKGTGLGAEIIGTFVLVYTVFSATDPKRSARDSH 203
F++ G GA G + + AE++GTF+L+ T+ +R+ +
Sbjct: 116 FIFLQCAGIGAATVGGLGATAPFPGISYWQAMLAEVVGTFLLMITIMGIAVDERAPKG-- 173
Query: 204 VPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGA---AVIYNKEKAWDDQWIFWVGPF 260
A + IG V + I+G+ +NPAR+FG +I+ W+ I+ +GP
Sbjct: 174 ---FAGIIIGLTVAGIITTLGNISGSSLNPARTFGPYLNDMIFAGTDLWNYYSIYVIGPI 230
Query: 261 IGAFVAAFYHQYI 273
+GA +AA +QY+
Sbjct: 231 VGAVLAALTYQYL 243
>pdb|3NKC|A Chain A, Crystal Structure Of Aqpz F43w,H174g,T183f
pdb|3NKC|B Chain B, Crystal Structure Of Aqpz F43w,H174g,T183f
Length = 234
Score = 76.3 bits (186), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 58/187 (31%), Positives = 86/187 (45%), Gaps = 21/187 (11%)
Query: 81 GVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLGRKVSLIRALLYMVAQCLGA 140
G+G G+A A+G + + + ISGGH NPAVT GL+ G + + Y++AQ +G
Sbjct: 36 GIGFAGVALAWGLTVLTMAFAVGHISGGHFNPAVTIGLWAGGRFPAKEVVGYVIAQVVGG 95
Query: 141 ICGC-----------GFVKAFQKSYYNRYGGGANELADGYNKGTGLGAEIIGTFVLVYTV 189
I GF A N YG GY+ + L E++ + + +
Sbjct: 96 IVAAALLYLIASGKTGFDAAASGFASNGYG---EHSPGGYSMLSALVVELVLSAGFLLVI 152
Query: 190 FSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNKEKAW 249
ATD A AP+ IG A+ ++ L +IP+T +NPARS A I+ A
Sbjct: 153 HGATDKFAPAG------FAPIAIGLALTLIGLISIPVTNFSVNPARS-TAVAIFQGGWAL 205
Query: 250 DDQWIFW 256
+ W FW
Sbjct: 206 EQLWFFW 212
>pdb|3NE2|A Chain A, Archaeoglobus Fulgidus Aquaporin
pdb|3NE2|B Chain B, Archaeoglobus Fulgidus Aquaporin
pdb|3NE2|C Chain C, Archaeoglobus Fulgidus Aquaporin
pdb|3NE2|D Chain D, Archaeoglobus Fulgidus Aquaporin
pdb|3NE2|E Chain E, Archaeoglobus Fulgidus Aquaporin
pdb|3NE2|F Chain F, Archaeoglobus Fulgidus Aquaporin
pdb|3NE2|G Chain G, Archaeoglobus Fulgidus Aquaporin
pdb|3NE2|H Chain H, Archaeoglobus Fulgidus Aquaporin
Length = 246
Score = 67.0 bits (162), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 65/197 (32%), Positives = 89/197 (45%), Gaps = 18/197 (9%)
Query: 87 IAWAFGGMIFILVYCTAGISGGHINPAVTFGL-----FLGRKVSLIRALLYMVAQCLGAI 141
I AF I ++Y ISG HINPAVT L F GR+V + Y+VAQ +GA
Sbjct: 59 IGMAFALAIAAVIYSLGRISGAHINPAVTIALWSIGRFPGREV-----VPYIVAQFIGAA 113
Query: 142 CGCGFVKAFQKSYYNRYGG-GANELADGYNKGTGLGAEIIGTFVLVYTVFSATDPKRSAR 200
G A GG GA G G + E IGTF+L+ + +R+
Sbjct: 114 LGSLLFLACVGPAAATVGGLGATAPFPGIGYGQAILTEAIGTFLLMLVIMGVAVDERAP- 172
Query: 201 DSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAV--IYNKEKAWDDQWIFWVG 258
P A L IG V + ITG+ +NPAR+FG + W I+ +G
Sbjct: 173 ----PGFAGLVIGLTVGGIITTIGNITGSSLNPARTFGPYLGDSLMGINLWQYFPIYVIG 228
Query: 259 PFIGAFVAAFYHQYILR 275
P +GA AA+ + Y+ +
Sbjct: 229 PIVGAVAAAWLYNYLAK 245
>pdb|1LDF|A Chain A, Crystal Structure Of The E. Coli Glycerol Facilitator
(Glpf) Mutation W48f, F200t
Length = 281
Score = 66.2 bits (160), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 60/220 (27%), Positives = 98/220 (44%), Gaps = 40/220 (18%)
Query: 87 IAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLGRKVSLIRALLYMVAQCLGAICGCGF 146
I+ FG + + +Y TAG+SG H+NPAVT L+L + + ++V+Q GA C
Sbjct: 44 ISVIFGLGVAMAIYLTAGVSGAHLNPAVTIALWLFACFDKRKVIPFIVSQVAGAFCAAAL 103
Query: 147 VKA--------FQKSYYNRYGGGAN-ELADGY--------NKGTGLGAEIIGTFVLVYTV 189
V F+++++ G + +LA + N E++ T +L+ +
Sbjct: 104 VYGLYYNLFFDFEQTHHIVRGSVESVDLAGTFSTYPNPHINFVQAFAVEMVITAILMGLI 163
Query: 190 FSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNKEKAW 249
+ TD LAPL IG + ++ + P+TGT +NPAR FG V AW
Sbjct: 164 LALTDDGNGVPRGP---LAPLLIGLLIAVIGASMGPLTGTAMNPARDFGPKVF-----AW 215
Query: 250 DDQW---------------IFWVGPFIGAFVAAFYHQYIL 274
W + GP +GA V AF ++ ++
Sbjct: 216 LAGWGNVAFTGGRDIPYFLVPLFGPIVGAIVGAFAYRKLI 255
>pdb|1FX8|A Chain A, Crystal Structure Of The E. Coli Glycerol Facilitator
(Glpf) With Substrate Glycerol
pdb|1LDA|A Chain A, Crystal Structure Of The E. Coli Glycerol Facilitator
(glpf) Without Substrate Glycerol
pdb|1LDI|A Chain A, Crystal Structure Of The E. Coli Glycerol Facilitator
(Glpf) Without Substrate Glycerol
Length = 281
Score = 63.5 bits (153), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 58/222 (26%), Positives = 97/222 (43%), Gaps = 42/222 (18%)
Query: 85 LGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLGRKVSLIRALLYMVAQCLGAICGC 144
+ + W G + + +Y TAG+SG H+NPAVT L+L + + ++V+Q GA C
Sbjct: 44 ISVIWGLG--VAMAIYLTAGVSGAHLNPAVTIALWLFACFDKRKVIPFIVSQVAGAFCAA 101
Query: 145 GFVKA--------FQKSYYNRYGGGAN-ELADGY--------NKGTGLGAEIIGTFVLVY 187
V F+++++ G + +LA + N E++ T +L+
Sbjct: 102 ALVYGLYYNLFFDFEQTHHIVRGSVESVDLAGTFSTYPNPHINFVQAFAVEMVITAILMG 161
Query: 188 TVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNKEK 247
+ + TD LAPL IG + ++ + P+TG +NPAR FG V
Sbjct: 162 LILALTDDGNGVPRGP---LAPLLIGLLIAVIGASMGPLTGFAMNPARDFGPKVF----- 213
Query: 248 AWDDQW---------------IFWVGPFIGAFVAAFYHQYIL 274
AW W + GP +GA V AF ++ ++
Sbjct: 214 AWLAGWGNVAFTGGRDIPYFLVPLFGPIVGAIVGAFAYRKLI 255
>pdb|3C02|A Chain A, X-Ray Structure Of The Aquaglyceroporin From Plasmodium
Falciparum
Length = 258
Score = 41.6 bits (96), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 48/200 (24%), Positives = 77/200 (38%), Gaps = 14/200 (7%)
Query: 85 LGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLGRKVSLIRALLYMVAQCLGAICGC 144
L + W G +F + +A +SG H+N AV+ GL K L + +Y AQ LGA G
Sbjct: 46 LCLGW--GLAVFFGILVSAKLSGAHLNLAVSIGLSSINKFDLKKIPVYFFAQLLGAFVGT 103
Query: 145 GFVKAFQKSYYNRYGGGANELADGYNKGTGLGAEIIGTFVLV---YTVFSATDPKRSARD 201
V + + N L +L V +
Sbjct: 104 STVYGLYHGFISNSKIPQFAWETSRNPSISLTGAFFNELILTGILLLVILVVVDENICGK 163
Query: 202 SHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVI----YNKEKAWDDQWIFW- 256
H+ L+ + +G + + + TG +NP+R G+ + Y K+ D + FW
Sbjct: 164 FHILKLSSV-VGLIILCIGITFGGNTGFALNPSRDLGSRFLSLIAYGKDTFTKDNFYFWV 222
Query: 257 --VGPFIGAFV-AAFYHQYI 273
V P +G+ V FY + I
Sbjct: 223 PLVAPCVGSVVFCQFYDKVI 242
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.326 0.143 0.455
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,693,874
Number of Sequences: 62578
Number of extensions: 352256
Number of successful extensions: 844
Number of sequences better than 100.0: 30
Number of HSP's better than 100.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 727
Number of HSP's gapped (non-prelim): 33
length of query: 289
length of database: 14,973,337
effective HSP length: 98
effective length of query: 191
effective length of database: 8,840,693
effective search space: 1688572363
effective search space used: 1688572363
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 51 (24.3 bits)