Query 022966
Match_columns 289
No_of_seqs 190 out of 1551
Neff 8.0
Searched_HMMs 46136
Date Fri Mar 29 07:28:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022966.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/022966hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0223 Aquaporin (major intri 100.0 4.6E-53 9.9E-58 367.3 21.7 231 34-283 3-234 (238)
2 PLN00184 aquaporin NIP1; Provi 100.0 8.7E-50 1.9E-54 358.9 24.8 224 37-277 49-275 (296)
3 KOG0224 Aquaporin (major intri 100.0 1.3E-51 2.7E-56 360.4 11.5 228 38-277 28-277 (316)
4 PTZ00016 aquaglyceroporin; Pro 100.0 1.4E-48 3.1E-53 351.9 26.7 226 39-277 47-292 (294)
5 COG0580 GlpF Glycerol uptake f 100.0 1.2E-48 2.7E-53 338.5 22.5 225 40-275 3-240 (241)
6 PF00230 MIP: Major intrinsic 100.0 1.6E-48 3.4E-53 342.0 23.3 227 35-270 1-227 (227)
7 PLN00182 putative aquaporin NI 100.0 5E-47 1.1E-51 339.0 26.5 216 39-275 39-254 (283)
8 PRK05420 aquaporin Z; Provisio 100.0 5.9E-47 1.3E-51 331.4 25.1 221 42-277 2-230 (231)
9 PLN00167 aquaporin TIP5; Provi 100.0 2.2E-46 4.7E-51 331.6 25.9 237 33-284 13-249 (256)
10 PLN00026 aquaporin NIP; Provi 100.0 2.1E-46 4.5E-51 336.3 23.8 218 38-277 67-284 (298)
11 PLN00166 aquaporin TIP2; Provi 100.0 6.4E-46 1.4E-50 327.8 25.1 229 35-277 11-239 (250)
12 PLN00027 aquaporin TIP; Provis 100.0 9.8E-46 2.1E-50 327.6 25.3 230 34-277 12-241 (252)
13 PLN00183 putative aquaporin NI 100.0 5.4E-44 1.2E-48 318.4 25.4 222 37-280 40-261 (274)
14 cd00333 MIP Major intrinsic pr 100.0 1.9E-43 4.2E-48 309.7 23.8 220 43-273 1-228 (228)
15 TIGR00861 MIP MIP family chann 100.0 1.2E-41 2.5E-46 296.2 21.4 216 47-270 1-216 (216)
16 PLN00026 aquaporin NIP; Provi 99.7 9.9E-17 2.2E-21 144.6 9.2 110 166-277 65-174 (298)
17 PLN00184 aquaporin NIP1; Provi 99.7 1.7E-16 3.6E-21 143.3 9.8 108 168-277 50-157 (296)
18 PLN00183 putative aquaporin NI 99.6 2.2E-15 4.7E-20 134.8 9.0 107 168-276 41-147 (274)
19 PLN00182 putative aquaporin NI 99.6 3.2E-15 7E-20 134.2 9.0 105 169-275 39-143 (283)
20 PLN00166 aquaporin TIP2; Provi 99.6 5.5E-15 1.2E-19 130.9 9.0 106 169-276 15-125 (250)
21 PLN00167 aquaporin TIP5; Provi 99.6 1.1E-14 2.4E-19 129.3 9.3 106 169-276 19-129 (256)
22 PTZ00016 aquaglyceroporin; Pro 99.6 1.2E-14 2.5E-19 131.7 9.3 106 170-277 48-153 (294)
23 PRK05420 aquaporin Z; Provisio 99.5 2.4E-14 5.1E-19 125.6 9.1 103 172-276 2-105 (231)
24 cd00333 MIP Major intrinsic pr 99.5 3.9E-14 8.5E-19 124.3 9.2 105 173-279 1-106 (228)
25 PLN00027 aquaporin TIP; Provis 99.5 4.7E-14 1E-18 125.3 9.7 104 170-275 18-126 (252)
26 COG0580 GlpF Glycerol uptake f 99.5 1.4E-13 2.9E-18 120.0 9.1 117 171-289 4-130 (241)
27 KOG0224 Aquaporin (major intri 99.4 3.4E-13 7.4E-18 119.1 7.5 106 170-277 30-136 (316)
28 TIGR00861 MIP MIP family chann 99.4 4E-13 8.7E-18 116.9 7.4 99 177-277 1-104 (216)
29 KOG0223 Aquaporin (major intri 99.3 2.2E-12 4.7E-17 112.8 7.8 108 168-277 7-114 (238)
30 PF00230 MIP: Major intrinsic 99.3 3.1E-12 6.7E-17 112.1 4.5 106 170-277 6-117 (227)
31 PRK10805 formate transporter; 95.2 2.2 4.7E-05 38.7 16.8 107 84-194 68-184 (285)
32 COG2116 FocA Formate/nitrite f 94.8 2.9 6.4E-05 37.4 18.4 186 82-279 62-262 (265)
33 PRK11562 nitrite transporter N 89.6 15 0.00033 33.0 18.7 187 85-285 59-260 (268)
34 PF01226 Form_Nir_trans: Forma 77.5 51 0.0011 29.2 13.8 112 83-196 56-175 (250)
35 TIGR00790 fnt formate/nitrite 74.1 62 0.0013 28.5 15.9 107 84-193 43-159 (239)
36 PRK09713 focB putative formate 68.8 91 0.002 28.3 18.3 109 85-196 68-185 (282)
37 PF03033 Glyco_transf_28: Glyc 46.3 7.3 0.00016 30.4 0.2 20 104-123 6-25 (139)
38 PF04632 FUSC: Fusaric acid re 41.1 3.8E+02 0.0083 26.8 14.8 54 100-153 357-413 (650)
39 PF08370 PDR_assoc: Plant PDR 40.7 49 0.0011 23.0 3.7 37 234-273 9-46 (65)
40 PF14990 DUF4516: Domain of un 36.3 75 0.0016 20.6 3.7 35 122-156 3-37 (47)
41 PRK12446 undecaprenyldiphospho 35.5 12 0.00025 34.9 -0.2 22 101-122 6-27 (352)
42 COG0730 Predicted permeases [G 33.8 3.2E+02 0.007 23.8 9.5 33 118-150 65-97 (258)
43 PF03842 Silic_transp: Silicon 29.0 4.8E+02 0.01 25.2 9.1 111 89-200 139-253 (512)
44 COG3301 NrfD Formate-dependent 24.5 5E+02 0.011 23.7 8.1 49 227-280 223-274 (305)
45 PRK11427 multidrug efflux syst 21.8 9E+02 0.019 25.0 11.3 28 125-152 394-421 (683)
46 PF09622 DUF2391: Putative int 21.5 2.2E+02 0.0048 25.6 5.4 40 115-154 80-123 (267)
47 PF09512 ThiW: Thiamine-precur 20.9 4.3E+02 0.0094 21.6 6.4 25 126-150 123-147 (150)
No 1
>KOG0223 consensus Aquaporin (major intrinsic protein family) [Carbohydrate transport and metabolism]
Probab=100.00 E-value=4.6e-53 Score=367.31 Aligned_cols=231 Identities=51% Similarity=0.838 Sum_probs=207.2
Q ss_pred cccCchHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHhcCccccccCHH
Q 022966 34 EELGKWSFYRAVIAEFIATLLFLYVTVLTVIGYKSQTDPNLNTDQCGGVGILGIAWAFGGMIFILVYCTAGISGGHINPA 113 (289)
Q Consensus 34 ~~~~~~~l~r~~~aEflgT~llvf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~i~~~~~iSGah~NPa 113 (289)
.+.++++.+|++++||++|++++|++|+++...... +...+.+.+++++|+.+++.+++++++||||+|||
T Consensus 3 ~~~~~~~~~~~~~aEF~~T~~~vf~g~~~~~~~~~~---------~~~~~l~~ial~~Gl~v~v~i~~~g~iSGaH~NPA 73 (238)
T KOG0223|consen 3 GELLSVSFLRALIAEFLATFLFVFAGCGSVVVNPKY---------GGPVGLLGIALAFGLAVFVLVYSTGHISGAHFNPA 73 (238)
T ss_pred cccccHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc---------CCCchhHHHHHHHHHHHHHHHhhhccccccccCHH
Confidence 345678999999999999999999999988765532 12345788999999999999999999999999999
Q ss_pred HHHHHHHhcCCchhHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhcCCCccccCCCCcchhhhHHHHHHHHHHHHHHHH-h
Q 022966 114 VTFGLFLGRKVSLIRALLYMVAQCLGAICGCGFVKAFQKSYYNRYGGGANELADGYNKGTGLGAEIIGTFVLVYTVFS-A 192 (289)
Q Consensus 114 VTla~~l~g~~~~~~~~~Yi~aQ~lGa~~g~~l~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~E~~~T~~Lv~~v~~-~ 192 (289)
||+++++.|++++.+++.|+.+|++|+++|+.+++.+.+++.+..+.+.+.+.++.+..|+++.|++.||+|++++++ .
T Consensus 74 VT~a~~~~~~isl~~~~~Y~vaQ~lGa~~g~~~l~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~E~ilTf~Lv~~v~~~a 153 (238)
T KOG0223|consen 74 VTLAFAVGGKISLFRAVAYIVAQLLGAIAGAALLKVVTPGQYNRKGLGLTGLAPGLSTGQGLVIEIILTFILVFTVFATA 153 (238)
T ss_pred HHHHHHHhCCCcHHHhHHHHHHHHHHHHHHHHHHheecCcccccCCcceeccCCCCCcchhHHHHHHHHHHHhheeEEEe
Confidence 999999999999999999999999999999999999999865555566677889999999999999999999999998 7
Q ss_pred cCCCCCCCCCCCCcchhHHHHHHHHHHHHHhcCCCCCccchhhhHHHHHHhCCCCCCCcceehhhhhHHHHHHHHHHHHH
Q 022966 193 TDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNKEKAWDDQWIFWVGPFIGAFVAAFYHQY 272 (289)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~iGl~v~~~~~~~~~~tG~~~NPAr~lg~~i~~~~~~~~~~~wvy~v~p~lGai~a~~~~~~ 272 (289)
+|+|++ .+.|+.||+++.+.+++.+.+||++|||||+|||+++++ .|+++|+||++|++|+++++++|++
T Consensus 154 ~d~~~~-------~~a~l~IG~~v~~~~l~~g~~TG~sMNPArSfGpAvv~~---~w~~hwiYwvgP~~Ga~~a~~~y~~ 223 (238)
T KOG0223|consen 154 TDPRRS-------ELAPLAIGFSVGLNILAAGPFTGASMNPARSFGPAVVYG---SWDDHWIYWVGPLLGAILAALIYRL 223 (238)
T ss_pred ecCCCc-------ccHHHHHHHHHHHHHHeecCcCcCccCcHHHhhHHHHhc---CCCcEEEEEhhHHHHHHHHHHHHHH
Confidence 777654 478999999999999999999999999999999999976 4999999999999999999999999
Q ss_pred Hhhhhhhhhcc
Q 022966 273 ILRAAAIKALG 283 (289)
Q Consensus 273 ~~~~~~~~~~~ 283 (289)
++++++.+...
T Consensus 224 v~~~~~~~~~~ 234 (238)
T KOG0223|consen 224 VFIPDESEPTK 234 (238)
T ss_pred hccCccccccC
Confidence 99988555443
No 2
>PLN00184 aquaporin NIP1; Provisional
Probab=100.00 E-value=8.7e-50 Score=358.89 Aligned_cols=224 Identities=25% Similarity=0.411 Sum_probs=187.4
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHhcCccccccCHHHHH
Q 022966 37 GKWSFYRAVIAEFIATLLFLYVTVLTVIGYKSQTDPNLNTDQCGGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTF 116 (289)
Q Consensus 37 ~~~~l~r~~~aEflgT~llvf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~i~~~~~iSGah~NPaVTl 116 (289)
.+.+++|++++||+|||+|+|++++++....... ...+++.++++||+++++.+++++++||||+|||||+
T Consensus 49 ~~~~~~~~~~aEfiGTflLvf~g~g~~~~~~~~~---------~~~~~~~iai~~Gl~v~~~i~~~g~iSGaH~NPAVTl 119 (296)
T PLN00184 49 VSVPFLQKLIAEVLGTYFLVFTGCASVVVNMQND---------NVVTLPGIAIVWGLTIMVLIYSLGHISGAHINPAVTI 119 (296)
T ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHhhcccCC---------CccccHHHHHHHHHHHHHHHHHhcCCCccccCHHHHH
Confidence 4567899999999999999999998765322111 1124667899999999999999999999999999999
Q ss_pred HHHHhcCCchhHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhcCCC---ccccCCCCcchhhhHHHHHHHHHHHHHHHHhc
Q 022966 117 GLFLGRKVSLIRALLYMVAQCLGAICGCGFVKAFQKSYYNRYGGG---ANELADGYNKGTGLGAEIIGTFVLVYTVFSAT 193 (289)
Q Consensus 117 a~~l~g~~~~~~~~~Yi~aQ~lGa~~g~~l~~~~~~~~~~~~~~~---~~~~~~~~s~~~~~~~E~~~T~~Lv~~v~~~~ 193 (289)
++++.|+++|.+++.|+++|++|+++|+++++.+++......... .....+..+..++|+.|+++|++|+++++++.
T Consensus 120 a~al~g~~~~~~~~~YiiaQllGA~lga~~~~~l~~~~~~~~~~~~~~~~~t~p~~s~~~af~~E~i~TfvLv~~il~~~ 199 (296)
T PLN00184 120 AFASCGRFPLKQVPAYVISQVIGSTLAAATLRLLFGLDHDVCSGKHDVFIGSSPVGSDLQAFVMEFIVTFYLMFIISGVA 199 (296)
T ss_pred HHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhccccccceeeccCcCCcHHHHHHHHHHHHHHHHHHHHhee
Confidence 999999999999999999999999999999999986543221111 11122345788999999999999999999876
Q ss_pred CCCCCCCCCCCCcchhHHHHHHHHHHHHHhcCCCCCccchhhhHHHHHHhCCCCCCCcceehhhhhHHHHHHHHHHHHHH
Q 022966 194 DPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNKEKAWDDQWIFWVGPFIGAFVAAFYHQYI 273 (289)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~iGl~v~~~~~~~~~~tG~~~NPAr~lg~~i~~~~~~~~~~~wvy~v~p~lGai~a~~~~~~~ 273 (289)
++++.. ..+.|+.||+++.+.+++.+++||++|||||||||+++.+ .|+++||||++|++|+++++++|+++
T Consensus 200 ~~~~~~-----~~~~~l~IG~~v~~~~~~~g~~TG~smNPAR~~GPal~~~---~~~~~WVy~vgPilGa~laal~y~~l 271 (296)
T PLN00184 200 TDNRAI-----GELAGLAIGSTVLLNVLIAAPVSSASMNPGRSLGPAMVYG---CYKGIWIYIVAPTLGAIAGAWVYNTV 271 (296)
T ss_pred ccCcCC-----CcchHHHHHHHHHHHHHHhcccCccccCchhhHHHHHHhh---cccccchHHhHHHHHHHHHHHHHHHH
Confidence 654321 2367999999999999999999999999999999999854 58899999999999999999999999
Q ss_pred hhhh
Q 022966 274 LRAA 277 (289)
Q Consensus 274 ~~~~ 277 (289)
+..+
T Consensus 272 ~~~~ 275 (296)
T PLN00184 272 RYTD 275 (296)
T ss_pred hcCC
Confidence 8654
No 3
>KOG0224 consensus Aquaporin (major intrinsic protein family) [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.3e-51 Score=360.43 Aligned_cols=228 Identities=27% Similarity=0.438 Sum_probs=198.7
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHhcCccccccCHHHHHH
Q 022966 38 KWSFYRAVIAEFIATLLFLYVTVLTVIGYKSQTDPNLNTDQCGGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFG 117 (289)
Q Consensus 38 ~~~l~r~~~aEflgT~llvf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~i~~~~~iSGah~NPaVTla 117 (289)
++++.|++++||+||++|++++++++++...... ...+++.+.++||+++++.+|+.+++||||+|||||++
T Consensus 28 ~~~l~Re~LAEFlGT~vL~~~G~g~v~Q~vls~g--------~~g~~~~vnlgwg~av~~gVyvag~iSGgHlNPAVS~a 99 (316)
T KOG0224|consen 28 RNELLREFLAEFLGTFVLVVFGLGSVAQAVLSGG--------TGGSFIGVNLGWGFAVMMGVYVAGRISGGHLNPAVSLA 99 (316)
T ss_pred HHHHHHHHHHHHHhHHHHHhhccceeEEEEeccC--------CCCceEEEEehHhHHHHHHHHhhccccccccCHHHHHH
Confidence 5679999999999999999999998876554422 12245668889999999999999999999999999999
Q ss_pred HHHhcCCchhHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhcCCCcc--------------ccCCCCcchhhhHHHHHHHH
Q 022966 118 LFLGRKVSLIRALLYMVAQCLGAICGCGFVKAFQKSYYNRYGGGAN--------------ELADGYNKGTGLGAEIIGTF 183 (289)
Q Consensus 118 ~~l~g~~~~~~~~~Yi~aQ~lGa~~g~~l~~~~~~~~~~~~~~~~~--------------~~~~~~s~~~~~~~E~~~T~ 183 (289)
+++.||++|+|+++|+++|++||++|++.+|.+|++.+.++.++.. -+.|..+++++|++|+++|.
T Consensus 100 ~~~~g~~p~~k~p~Y~~aQ~iGAF~gaa~~y~~y~d~i~~f~Gg~~~vtgp~aTAgiFaTyP~p~ls~~n~F~DqfigTa 179 (316)
T KOG0224|consen 100 MCILGRLPWKKFPVYVLAQFIGAFLGAATVYGLYYDAINEFDGGNRTVTGPKATAGIFATYPAPHLSLWNGFFDQFIGTA 179 (316)
T ss_pred HHHhcCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCceEecCCccceEEEeecCchHhhhhHHHHHHHHHHH
Confidence 9999999999999999999999999999999999998887765532 23567889999999999999
Q ss_pred HHHHHHHHhcCCCCCCCCCCCCcchhHHHHHHHHHHHHHhcCCCCCccchhhhHHHHHHh-----CCCCCC---Ccceeh
Q 022966 184 VLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIY-----NKEKAW---DDQWIF 255 (289)
Q Consensus 184 ~Lv~~v~~~~~~~~~~~~~~~~~~~~~~iGl~v~~~~~~~~~~tG~~~NPAr~lg~~i~~-----~~~~~~---~~~wvy 255 (289)
+|+.++++++|++|... ..+.|+.+|+.+.++..+.+.++|..+||||||+||++. +.+..+ .++|++
T Consensus 180 ~L~~~l~aI~D~rN~~p----~g~~p~~iG~lv~~Ig~s~G~N~GyaiNPARDlgPRlF~~~aGyG~~vF~~~~~~~WvP 255 (316)
T KOG0224|consen 180 MLVLCLFAITDKRNPIP----TGLHPLVIGILVVAIGMSLGYNTGYAINPARDLGPRLFTSIAGYGPEVFSAGHNWWWVP 255 (316)
T ss_pred HHHhheeEEecCCCCCC----cchhHHHHHHHHHHHHHHhhcccCcccCcccccchHHHHHHHhcchhhcccCCceeeee
Confidence 99999999999988432 568899999999999999999999999999999999982 222222 568899
Q ss_pred hhhhHHHHHHHHHHHHHHhhhh
Q 022966 256 WVGPFIGAFVAAFYHQYILRAA 277 (289)
Q Consensus 256 ~v~p~lGai~a~~~~~~~~~~~ 277 (289)
|++|++|+++++++|++++..+
T Consensus 256 ivgPl~Gai~G~~iY~~~Ig~h 277 (316)
T KOG0224|consen 256 IVGPLIGAILGGWIYDFFIGFH 277 (316)
T ss_pred ehhhhhhhhhhhhhheeeeecc
Confidence 9999999999999999998554
No 4
>PTZ00016 aquaglyceroporin; Provisional
Probab=100.00 E-value=1.4e-48 Score=351.92 Aligned_cols=226 Identities=26% Similarity=0.382 Sum_probs=189.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHhcCccccccCHHHHHHH
Q 022966 39 WSFYRAVIAEFIATLLFLYVTVLTVIGYKSQTDPNLNTDQCGGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGL 118 (289)
Q Consensus 39 ~~l~r~~~aEflgT~llvf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~i~~~~~iSGah~NPaVTla~ 118 (289)
++++|++++||+||++++|+++++..+..... ...+.+.+++++|+++++.+++++++||||+|||||+++
T Consensus 47 ~~~~~~~laEfigT~llvf~g~g~~~~~~~~~---------~~~~~~~ial~~Glav~~~i~~~g~iSG~h~NPAVTla~ 117 (294)
T PTZ00016 47 RPNVREYVAEFLGTFVLLFFGEGVVATTHTVG---------NNGDYLAITIGWGLGVTFGLLVSAGISGGHLNPAVTLGN 117 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcccccC---------CCCCcHHHHHHHHHHHHHHHHHhcccCcCccCHHHHHHH
Confidence 57889999999999999999998765432211 012356789999999999999999999999999999999
Q ss_pred HHhcCCchhHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhcCCC-------------ccccCCCCcchhhhHHHHHHHHHH
Q 022966 119 FLGRKVSLIRALLYMVAQCLGAICGCGFVKAFQKSYYNRYGGG-------------ANELADGYNKGTGLGAEIIGTFVL 185 (289)
Q Consensus 119 ~l~g~~~~~~~~~Yi~aQ~lGa~~g~~l~~~~~~~~~~~~~~~-------------~~~~~~~~s~~~~~~~E~~~T~~L 185 (289)
++.|+++|++++.|+++|++|+++|++++|.++++.+.+.+.. .....++.+..++|+.|+++|++|
T Consensus 118 ~l~g~i~~~~~~~YiiaQ~lGa~~ga~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~t~p~~s~~~a~~~E~i~T~iL 197 (294)
T PTZ00016 118 AVFGKFPWKKLPGYFVAQLLGAFVGAACVYGLYYGFFKDHGIPELPWETMANGFAGVFATYPREGNFYAIFSELILTAIL 197 (294)
T ss_pred HHhccCCHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhcCcccccccccccccceeeCCCCccHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999998755433211 112234567789999999999999
Q ss_pred HHHHHHhcCCCCCCCCCCCCcchhHHHHHHHHHHHHHhcCCCCCccchhhhHHHHHHhC---CCCCCC----cceehhhh
Q 022966 186 VYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYN---KEKAWD----DQWIFWVG 258 (289)
Q Consensus 186 v~~v~~~~~~~~~~~~~~~~~~~~~~iGl~v~~~~~~~~~~tG~~~NPAr~lg~~i~~~---~~~~~~----~~wvy~v~ 258 (289)
+++++++.|+++... ....|+.+|+++++++++.+++||+++||||||||+++.. +...|. ++|+||++
T Consensus 198 v~~ila~~d~~~~~~----~~~~pl~IGl~v~~i~~~~g~~TG~smNPAR~fGPal~~~~~~g~~~~~~~~~~~WVy~vg 273 (294)
T PTZ00016 198 LLVILAITDPNNCPA----FNYLPVAVGLLVFVIGISFGGNTGYALNPARDLGPRLFSAILWGSEVFTKDNYYFWVPLVA 273 (294)
T ss_pred HHHHHHhccCccCCC----cCcccHHHHHHHHHHHHhccCCCCCcccchhhHHHHHHHHHhccccccCcCCceeeeeehH
Confidence 999999988766432 2357999999999999999999999999999999999852 122343 68999999
Q ss_pred hHHHHHHHHHHHHHHhhhh
Q 022966 259 PFIGAFVAAFYHQYILRAA 277 (289)
Q Consensus 259 p~lGai~a~~~~~~~~~~~ 277 (289)
|++|+++|+++|++++.++
T Consensus 274 P~vGa~~aally~~ll~~~ 292 (294)
T PTZ00016 274 PFVGAVLGMFLYDKFIPPL 292 (294)
T ss_pred HHHHHHHHHHHHHHHhCCC
Confidence 9999999999999998765
No 5
>COG0580 GlpF Glycerol uptake facilitator and related permeases (Major Intrinsic Protein Family) [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.2e-48 Score=338.55 Aligned_cols=225 Identities=33% Similarity=0.535 Sum_probs=190.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHhcCccccccCHHHHHHHH
Q 022966 40 SFYRAVIAEFIATLLFLYVTVLTVIGYKSQTDPNLNTDQCGGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLF 119 (289)
Q Consensus 40 ~l~r~~~aEflgT~llvf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~i~~~~~iSGah~NPaVTla~~ 119 (289)
++.|++++||+||++|++.++++++.......+ ....+++.++++||+++++.+|+++++||||+|||||++++
T Consensus 3 ~~~~~~~aEflGT~~Li~~G~G~~a~~~l~~~~------~~~~~~~~i~~~wGl~V~~~iy~~g~iSGaHlNPAVTi~la 76 (241)
T COG0580 3 TLTKKLLAEFLGTFLLIFFGNGSVAAVALKGSK------ALGGGWLGIALAWGLGVLVAIYAFGGISGAHLNPAVTIALA 76 (241)
T ss_pred cHHHHHHHHHHHHHHHHHhhccHHHHHHhcccc------ccccceeehhHHHHHHHHHHHHhccCcCccccChHHHHHHH
Confidence 456888999999999999999998877655432 23456777999999999999999999999999999999999
Q ss_pred HhcCCchhHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhcCC------CccccC-CCCcchhhhHHHHHHHHHHHHHHHHh
Q 022966 120 LGRKVSLIRALLYMVAQCLGAICGCGFVKAFQKSYYNRYGG------GANELA-DGYNKGTGLGAEIIGTFVLVYTVFSA 192 (289)
Q Consensus 120 l~g~~~~~~~~~Yi~aQ~lGa~~g~~l~~~~~~~~~~~~~~------~~~~~~-~~~s~~~~~~~E~~~T~~Lv~~v~~~ 192 (289)
+.|+++|++++.||++|++||++|+.++|.++++++.+.+. +..... ...+..++|+.|+++||+|++++++.
T Consensus 77 ~~g~fp~~~v~~YivAQ~lGA~~ga~l~~~~~~~~~~~~~~~~~~~~g~~~t~p~~~~~~~~fl~E~v~T~~L~~~Ila~ 156 (241)
T COG0580 77 VRGRFPWRKVLPYIVAQVLGAFAGAALLYLLYYGKILETEGDPLASLGAFSTSPGGYSLGQAFLIEFVGTFVLVLGILAL 156 (241)
T ss_pred HhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhcCCchhhccccccCCCcccHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999987765541 122222 23477899999999999999999998
Q ss_pred cCCCCCCCCCCCCcchhHHHHHHHHHHHHHhcCCCCCccchhhhHHHHHHh---CC---CCCCCcceehhhhhHHHHHHH
Q 022966 193 TDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIY---NK---EKAWDDQWIFWVGPFIGAFVA 266 (289)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~iGl~v~~~~~~~~~~tG~~~NPAr~lg~~i~~---~~---~~~~~~~wvy~v~p~lGai~a 266 (289)
.++++. + ..+.|+.||+.+.++.++.++.||.++|||||+|||+.+ ++ ..++.|.|+||++|++|++++
T Consensus 157 ~~~~~~-~----~~~apl~iGllv~~i~~s~g~~TG~aiNPARdlGprl~~~~~g~~~~~g~~~y~wipvigpiiGa~lg 231 (241)
T COG0580 157 TDDGNA-N----AGFAPLAIGLLVTAIGLSLGPTTGTAINPARDLGPRLAHSLAGWAANKGDSSYFWIPVIGPIVGAILG 231 (241)
T ss_pred hccCcc-c----ccchHHHHHHHHHHHHHHhcCCCCCccChHHHHHHHHHHHhcCcccCCCCCCeEeeeehHHHHHHHHH
Confidence 875544 1 348899999999999999999999999999999999953 21 112268999999999999999
Q ss_pred HHHHHHHhh
Q 022966 267 AFYHQYILR 275 (289)
Q Consensus 267 ~~~~~~~~~ 275 (289)
+++|+.++.
T Consensus 232 ~~~~~~~~~ 240 (241)
T COG0580 232 ALLYKLLLG 240 (241)
T ss_pred HHHHHHHcc
Confidence 999998764
No 6
>PF00230 MIP: Major intrinsic protein; InterPro: IPR000425 A number of transmembrane (TM) channel proteins can be grouped together on the basis of sequence similarities [, , , , ]. These include: Mammalian major intrinsic protein (MIP). MIP is the major component of lens fibre gap junctions. Mammalian aquaporins []. These proteins form water- specific channels that provide the plasma membranes of red cells and kidney prox imal and collecting tubules with high permeability to water, thereby permitting water to move in the direction of an osmotic gradient. Soybean nodulin-26, a major component of the peribacteroid membrane induced during nodulation in legume roots after Rhizobium infection. Plants tonoplast intrinsic proteins (TIP). There are various isoforms of TIP : alpha (seed), gamma, Rt (root), and Wsi (water-stress induced). These proteins may allow the diffusion of water, amino acids and/or peptides from the tonoplas t interior to the cytoplasm. Bacterial glycerol facilitator protein (gene glpF), which facilitates the mo vement of glycerol across the cytoplasmic membrane. Salmonella typhimurium propanediol diffusion fac ilitator (gene pduF). Yeast FPS1, a glycerol uptake/efflux facilitator protein. Drosophila neurogenic protein 'big brain' (bib). This protein may mediate in tercellular communication; it may functions by allowing the transport of certain molecules(s) and thereby sending a signal for an exodermal cell to become an ep idermoblast instead of a neuroblast. Yeast hypothetical protein YFL054c. A hypothetical protein from the pepX region of Lactococcus lactis. The structures of various members of the MIP family have been determined by means of X-ray diffraction [, , ], revealing the fold to comprise a right-handed bundle of 6 transmembrane (TM) alpha-helices [, , ]. Similarities in the N-and C-terminal halves of the molecule suggest that the proteins may have arisen through tandem, intragenic duplication of an ancestral protein that contained 3 TM domains []. Some of the proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins []. Aquaporin-CHIP (Aquaporin 1) belongs to the Colton blood group system and is associated with Co(a/b) antigen.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3NE2_A 2C32_A 1YMG_A 2B6P_A 3C02_A 2B5F_D 3CN6_A 3CN5_A 1Z98_M 3CLL_A ....
Probab=100.00 E-value=1.6e-48 Score=341.96 Aligned_cols=227 Identities=38% Similarity=0.587 Sum_probs=194.6
Q ss_pred ccCchHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHhcCccccccCHHH
Q 022966 35 ELGKWSFYRAVIAEFIATLLFLYVTVLTVIGYKSQTDPNLNTDQCGGVGILGIAWAFGGMIFILVYCTAGISGGHINPAV 114 (289)
Q Consensus 35 ~~~~~~l~r~~~aEflgT~llvf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~i~~~~~iSGah~NPaV 114 (289)
|.++++++|++++||+||++++|+++++.........+. +.....+...+++++|+++++.+++++++||||+||+|
T Consensus 1 ~~~~~~~~r~~~aEfigT~~lvf~~~~~~~~~~~~~~~~---~~~~~~~~~~ial~~g~~~~~~i~~~~~iSGaH~NPaV 77 (227)
T PF00230_consen 1 ELKSPSLWRKFLAEFIGTFLLVFFGCGSVAALNGSTSSS---GSDVSGGWLQIALAWGLALAALIYAFGPISGAHFNPAV 77 (227)
T ss_dssp GCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSTT---STTSSHHHHHHHHHHHHHHHHHHHHHHHHHTSS-SHHH
T ss_pred CcccHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccc---cccccccHHHHHHHHHHhhhhhhhhhhhccccccccch
Confidence 567889999999999999999999998766443322110 01122467789999999999999999999999999999
Q ss_pred HHHHHHhcCCchhHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhcCCCccccCCCCcchhhhHHHHHHHHHHHHHHHHhcC
Q 022966 115 TFGLFLGRKVSLIRALLYMVAQCLGAICGCGFVKAFQKSYYNRYGGGANELADGYNKGTGLGAEIIGTFVLVYTVFSATD 194 (289)
Q Consensus 115 Tla~~l~g~~~~~~~~~Yi~aQ~lGa~~g~~l~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~E~~~T~~Lv~~v~~~~~ 194 (289)
|+++++.|++++++++.|+++|++|+++|+.+++.++++.........+.+.++.+..++++.|+++|++|+++++...+
T Consensus 78 Tla~~l~g~~~~~~~~~Yi~aQ~lGa~~g~~l~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~E~~~t~il~~~i~~~~~ 157 (227)
T PF00230_consen 78 TLAFALTGRISWKKAIVYIIAQFLGAFLGALLVYALYPDSNSAAGIFATTPPPGISLGQAFFSEFIGTFILVLVILAVAD 157 (227)
T ss_dssp HHHHHHTTSSSHHHHHHHHHHHHHHHHHHHHHHHHHSTHHHTCTTTTSCGSTTTSSHHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred hhheeeeeeecccceeeEEeeccccccccccchhhcccCcccccccccccccccchhhhhhhhhhhhhhHHHhhhhhhcc
Confidence 99999999999999999999999999999999999998864444445556778889999999999999999999999999
Q ss_pred CCCCCCCCCCCcchhHHHHHHHHHHHHHhcCCCCCccchhhhHHHHHHhCCCCCCCcceehhhhhHHHHHHHHHHH
Q 022966 195 PKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNKEKAWDDQWIFWVGPFIGAFVAAFYH 270 (289)
Q Consensus 195 ~~~~~~~~~~~~~~~~~iGl~v~~~~~~~~~~tG~~~NPAr~lg~~i~~~~~~~~~~~wvy~v~p~lGai~a~~~~ 270 (289)
+++..+. ..+.|+.||+++.+..+..+..||+++||||+|+|+++.+ .|+++|+||++|++|+++|+++|
T Consensus 158 ~~~~~~~---~~~~p~~ig~~v~~~~~~~~~~tG~~~NPAr~~g~~l~~~---~~~~~wvy~~~P~~Ga~~a~~~Y 227 (227)
T PF00230_consen 158 DKRKFPL---GPLAPLAIGLTVGALVLAGGPYTGASLNPARALGPALFSG---IWDYFWVYWVGPFIGAILAALLY 227 (227)
T ss_dssp TTSSSTS---SGGHHHHHHHHHHHHHHHHHHHHST-SSHHHHHHHHHHHT---HHTTTTHHHHHHHHHHHHHHHHH
T ss_pred ccccccc---ccccceeEEEEEeecccccccccccccCchhhcCceeecc---cCCeEEEEEehHHHHHHHHHhhC
Confidence 8876543 2378999999999999999999999999999999999965 39999999999999999999987
No 7
>PLN00182 putative aquaporin NIP4; Provisional
Probab=100.00 E-value=5e-47 Score=339.02 Aligned_cols=216 Identities=26% Similarity=0.447 Sum_probs=182.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHhcCccccccCHHHHHHH
Q 022966 39 WSFYRAVIAEFIATLLFLYVTVLTVIGYKSQTDPNLNTDQCGGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGL 118 (289)
Q Consensus 39 ~~l~r~~~aEflgT~llvf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~i~~~~~iSGah~NPaVTla~ 118 (289)
++++|++++||+|||+|+|++++++........ ..+.+.+++++|+++++.+++++++||||+|||||+++
T Consensus 39 ~~~~~~~~aEflgTflLvf~g~g~~~~~~~~~~---------~~~~~~iala~Gl~v~~~i~~~g~iSGah~NPAVTla~ 109 (283)
T PLN00182 39 VCLTQKLIAEMIGTYFIIFSGCGVVVVNVLYGG---------TITFPGICVTWGLIVMVMIYSTGHISGAHFNPAVTVTF 109 (283)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCC---------CcchHHHHHHHHHHHHHHHHHhcCCCccccCHHHHHHH
Confidence 478899999999999999999997664321110 12356788899999999999999999999999999999
Q ss_pred HHhcCCchhHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhcCCCccccCCCCcchhhhHHHHHHHHHHHHHHHHhcCCCCC
Q 022966 119 FLGRKVSLIRALLYMVAQCLGAICGCGFVKAFQKSYYNRYGGGANELADGYNKGTGLGAEIIGTFVLVYTVFSATDPKRS 198 (289)
Q Consensus 119 ~l~g~~~~~~~~~Yi~aQ~lGa~~g~~l~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~E~~~T~~Lv~~v~~~~~~~~~ 198 (289)
++.|+++|.+++.|+++|++|+++|+++++.+++... .+.....++.+..++++.|+++|++|+++++...++++.
T Consensus 110 ~~~~~~~~~~~~~Yi~aQ~lGa~~ga~~~~~~~~~~~----~~~~~~~p~~s~~~a~~~E~l~TfiLv~~i~~~~~~~~~ 185 (283)
T PLN00182 110 AIFRRFPWYQVPLYIGAQLTGSLLASLTLRLMFNVTP----EAFFGTTPTDSSGQALVAEIIISFLLMFVISGVATDSRA 185 (283)
T ss_pred HHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccc----cceeeCCCCcchHHHHHHHHHHHHHHHHHHHhheecccc
Confidence 9999999999999999999999999999999985421 111222345578899999999999999999976554432
Q ss_pred CCCCCCCcchhHHHHHHHHHHHHHhcCCCCCccchhhhHHHHHHhCCCCCCCcceehhhhhHHHHHHHHHHHHHHhh
Q 022966 199 ARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNKEKAWDDQWIFWVGPFIGAFVAAFYHQYILR 275 (289)
Q Consensus 199 ~~~~~~~~~~~~~iGl~v~~~~~~~~~~tG~~~NPAr~lg~~i~~~~~~~~~~~wvy~v~p~lGai~a~~~~~~~~~ 275 (289)
. ....++.+|+++++..++.+++||+++||||+|+|+++.+ .|.++|+||++|++|+++++++|+++..
T Consensus 186 ~-----~~~~~l~iGl~V~~~~~~~g~~SGa~lNPARt~gpal~~~---~~~~~wvY~vap~lGA~lgally~~l~~ 254 (283)
T PLN00182 186 V-----GELAGIAVGMTIILNVFVAGPISGASMNPARSLGPAIVMG---RYKGIWVYIVGPFVGIIAGGFVYNLIRF 254 (283)
T ss_pred C-----CcchhHHHHHHHHHHHHHccccCccccChHHHHHHHHHhc---cccceeHHHHHHHHHHHHHHHHHHHHhc
Confidence 1 2357999999999999999999999999999999999843 5899999999999999999999999974
No 8
>PRK05420 aquaporin Z; Provisional
Probab=100.00 E-value=5.9e-47 Score=331.40 Aligned_cols=221 Identities=30% Similarity=0.578 Sum_probs=182.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHhcCccccccCHHHHHHHHHh
Q 022966 42 YRAVIAEFIATLLFLYVTVLTVIGYKSQTDPNLNTDQCGGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLG 121 (289)
Q Consensus 42 ~r~~~aEflgT~llvf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~i~~~~~iSGah~NPaVTla~~l~ 121 (289)
+|++++||+||++|+|++++++....... ....+.+.+++++|+++++.+++++++||+|+|||||+++++.
T Consensus 2 ~~~~laEfigT~~lv~~g~~~~~~~~~~~--------~~~~~~~~ial~~Gl~v~~~i~~~g~iSG~h~NPAvtl~~~~~ 73 (231)
T PRK05420 2 FKKLAAEFFGTFWLVFGGCGSAVLAAAFP--------ELGIGFLGVALAFGLTVLTMAYAVGHISGGHFNPAVSVGLWAG 73 (231)
T ss_pred hHHHHHHHHHHHHHHHHHhhHHHhhcccC--------CCCCchHHHHHHHHHHHHHHHHHHhCcccccCCHHHHHHHHHh
Confidence 68999999999999999999765322111 0112456789999999999999999999999999999999999
Q ss_pred cCCchhHHHHHHHhhhhhHHHHHHHHHHHhhhhh--hhcC-----CCc-cccCCCCcchhhhHHHHHHHHHHHHHHHHhc
Q 022966 122 RKVSLIRALLYMVAQCLGAICGCGFVKAFQKSYY--NRYG-----GGA-NELADGYNKGTGLGAEIIGTFVLVYTVFSAT 193 (289)
Q Consensus 122 g~~~~~~~~~Yi~aQ~lGa~~g~~l~~~~~~~~~--~~~~-----~~~-~~~~~~~s~~~~~~~E~~~T~~Lv~~v~~~~ 193 (289)
|+++|++.+.|+++|++|+++|+.+++.++++.. +..+ .+. ...+...+..++++.|+++|++|+++++...
T Consensus 74 ~~i~~~~~~~Y~~aQ~lGa~~ga~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~v~T~iLv~~i~~~~ 153 (231)
T PRK05420 74 GRFPAKELVPYIIAQVVGGIAAAAVLYLIASGKAGFDLAGSGFASNGYGEHSPGGYSLLAALVCEVVLTAFFLLVILGAT 153 (231)
T ss_pred CCCCHHHhHHHHHHHHHHHHHHHHHHHHHhCCccccccccccccccccccCCCCcccHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999998886431 1100 000 0112345678999999999999999999988
Q ss_pred CCCCCCCCCCCCcchhHHHHHHHHHHHHHhcCCCCCccchhhhHHHHHHhCCCCCCCcceehhhhhHHHHHHHHHHHHHH
Q 022966 194 DPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNKEKAWDDQWIFWVGPFIGAFVAAFYHQYI 273 (289)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~iGl~v~~~~~~~~~~tG~~~NPAr~lg~~i~~~~~~~~~~~wvy~v~p~lGai~a~~~~~~~ 273 (289)
|+++. ....|+.+|+.+.+..++.+++||+++||||||+|+++.+ +..|+++|+||++|++|+++++++|+++
T Consensus 154 ~~~~~------~~~~p~~iGl~v~~~~~~~~~~TG~s~NPAR~~gpal~~g-~~~~~~~wvy~vgP~~Ga~laa~~y~~l 226 (231)
T PRK05420 154 DKRAP------AGFAPIAIGLALTLIHLISIPVTNTSVNPARSTGVALFVG-GWALEQLWLFWVAPIVGAIIGGLIYRLL 226 (231)
T ss_pred CCCCC------CcchHHHHHHHHHHHHHHhhccCCCccCcHHHHHHHHHhC-CCCccceEEeehHHHHHHHHHHHHHHHH
Confidence 86542 2368999999999999999999999999999999999964 3345689999999999999999999998
Q ss_pred hhhh
Q 022966 274 LRAA 277 (289)
Q Consensus 274 ~~~~ 277 (289)
++.+
T Consensus 227 ~~~~ 230 (231)
T PRK05420 227 LEKD 230 (231)
T ss_pred hccC
Confidence 7654
No 9
>PLN00167 aquaporin TIP5; Provisional
Probab=100.00 E-value=2.2e-46 Score=331.59 Aligned_cols=237 Identities=31% Similarity=0.482 Sum_probs=195.2
Q ss_pred ccccCchHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHhcCccccccCH
Q 022966 33 FEELGKWSFYRAVIAEFIATLLFLYVTVLTVIGYKSQTDPNLNTDQCGGVGILGIAWAFGGMIFILVYCTAGISGGHINP 112 (289)
Q Consensus 33 ~~~~~~~~l~r~~~aEflgT~llvf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~i~~~~~iSGah~NP 112 (289)
.++..+++++|++++||+|||+++|+++++.......... +.....+++.+++++|+++++.+++++++||+|+||
T Consensus 13 ~~~~~~~~~~~~~laEflgTf~lv~~~~g~~~~~~~~~~~----~~~~~~~~~~i~l~~Gl~v~~~i~~~g~iSGah~NP 88 (256)
T PLN00167 13 FQQSVTRNALRSYLAEFISTFFFVFAAVGSAMSSRKLMPD----AASDPSSLLIVAIANAFALSSAVYIAANISGGHVNP 88 (256)
T ss_pred hhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccc----ccCCCCcchHHHHHHHHHHHHHHHHhhcccccccCH
Confidence 3444567899999999999999999999987643211000 001122467799999999999999999999999999
Q ss_pred HHHHHHHHhcCCchhHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhcCCCccccCCCCcchhhhHHHHHHHHHHHHHHHHh
Q 022966 113 AVTFGLFLGRKVSLIRALLYMVAQCLGAICGCGFVKAFQKSYYNRYGGGANELADGYNKGTGLGAEIIGTFVLVYTVFSA 192 (289)
Q Consensus 113 aVTla~~l~g~~~~~~~~~Yi~aQ~lGa~~g~~l~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~E~~~T~~Lv~~v~~~ 192 (289)
|||++.++.|+++|++.+.|+++|++|+++|+++++.++++... ......++.+..++++.|+++|++|+++++..
T Consensus 89 Avtl~~~~~g~~~~~~~~~yi~aQ~lGa~~ga~~~~~~~~~~~~----~~~~~~~~~s~~~~~~~E~i~T~~L~~~i~~~ 164 (256)
T PLN00167 89 AVTFGMAVGGHISVPTAMFYWISQMLASVMACLFLKVTTVGQHV----PTYKIAEEMTGFGASVLEGVLTFGLVYTVYAA 164 (256)
T ss_pred HHHHHHHHhCCCcHhhhhHHHHHHHHHHHHHHHHHHHhhccccc----cccccCcccchHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999988664211 11222345567789999999999999999988
Q ss_pred cCCCCCCCCCCCCcchhHHHHHHHHHHHHHhcCCCCCccchhhhHHHHHHhCCCCCCCcceehhhhhHHHHHHHHHHHHH
Q 022966 193 TDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNKEKAWDDQWIFWVGPFIGAFVAAFYHQY 272 (289)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~iGl~v~~~~~~~~~~tG~~~NPAr~lg~~i~~~~~~~~~~~wvy~v~p~lGai~a~~~~~~ 272 (289)
.|+++... +...|+.+|+++.+..++.+++||+++||||||+|+++++ .|+++|+||++|++|+++++++|++
T Consensus 165 ~~~~~~~~----~~~~pl~iGl~v~~~~~~~g~~TG~a~NPAR~~gPal~~~---~~~~~wvywvgP~~Ga~l~a~~y~~ 237 (256)
T PLN00167 165 GDPRRGLL----GAIGPLAIGLVAGANVLAAGPFSGGSMNPACAFGSAVVAG---SFKNQAVYWVGPLLGGAVAGLLYDN 237 (256)
T ss_pred ccccccCC----CCcchHHHHHHHHHHHHhccCCCCcccCcccchHHHHhcc---CccCcEEEeHHHHHHHHHHHHHHHH
Confidence 88765321 3468999999999999999999999999999999999854 5889999999999999999999999
Q ss_pred Hhhhhhhhhccc
Q 022966 273 ILRAAAIKALGS 284 (289)
Q Consensus 273 ~~~~~~~~~~~~ 284 (289)
++.|+.++.-..
T Consensus 238 l~~~~~~~~~~~ 249 (256)
T PLN00167 238 VVFPTQDDRGSS 249 (256)
T ss_pred HhCCCcCCCCCC
Confidence 998876665433
No 10
>PLN00026 aquaporin NIP; Provisional
Probab=100.00 E-value=2.1e-46 Score=336.27 Aligned_cols=218 Identities=27% Similarity=0.424 Sum_probs=183.3
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHhcCccccccCHHHHHH
Q 022966 38 KWSFYRAVIAEFIATLLFLYVTVLTVIGYKSQTDPNLNTDQCGGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFG 117 (289)
Q Consensus 38 ~~~l~r~~~aEflgT~llvf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~i~~~~~iSGah~NPaVTla 117 (289)
..+++|++++||+|||+|+|+++++........ ...+++.+++++|+++++.+++++++||||+|||||++
T Consensus 67 ~~~~~r~~laEfiGTflLvf~g~~~~~~~~~~~---------~~~~~~~ial~~GlaV~~~i~~~g~ISGaHlNPAVTla 137 (298)
T PLN00026 67 DVSLTRKLGAEFVGTFILIFAATAGPIVNQKYD---------GAETLIGNAACAGLAVMIVILSTGHISGAHLNPSLTIA 137 (298)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHhccccC---------CccchHHHHHHHHHHHHHHHHHhhccCccccCHHHHHH
Confidence 456889999999999999999987644211110 11235668899999999999999999999999999999
Q ss_pred HHHhcCCchhHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhcCCCccccCCCCcchhhhHHHHHHHHHHHHHHHHhcCCCC
Q 022966 118 LFLGRKVSLIRALLYMVAQCLGAICGCGFVKAFQKSYYNRYGGGANELADGYNKGTGLGAEIIGTFVLVYTVFSATDPKR 197 (289)
Q Consensus 118 ~~l~g~~~~~~~~~Yi~aQ~lGa~~g~~l~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~E~~~T~~Lv~~v~~~~~~~~ 197 (289)
+++.++++|.+.+.|+++|++|+++|+++++.++++... .+. ..++.+..++++.|+++|++|++++++..++++
T Consensus 138 ~al~g~~~~~~~~~YiiaQilGAi~aa~~~~~~~~~~~~---~g~--t~p~~s~~~a~~~Efi~TfiLv~vi~~v~~~~~ 212 (298)
T PLN00026 138 FAALRHFPWKHVPAYIAAQVSASICASFALKGVFHPFMS---GGV--TVPSVSTGQAFALEFIITFNLLFVVTAVATDTR 212 (298)
T ss_pred HHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhccccc---Cce--eeecccHHHHHHHHHHHHHHHHHhheeeecCCC
Confidence 999999999999999999999999999999999876321 122 224668899999999999999999987654433
Q ss_pred CCCCCCCCcchhHHHHHHHHHHHHHhcCCCCCccchhhhHHHHHHhCCCCCCCcceehhhhhHHHHHHHHHHHHHHhhhh
Q 022966 198 SARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNKEKAWDDQWIFWVGPFIGAFVAAFYHQYILRAA 277 (289)
Q Consensus 198 ~~~~~~~~~~~~~~iGl~v~~~~~~~~~~tG~~~NPAr~lg~~i~~~~~~~~~~~wvy~v~p~lGai~a~~~~~~~~~~~ 277 (289)
.. ....++.+|+++++.+++.+.+||+++||||||+|+++.+ +|+++|+||++|++|+++++++|+++..++
T Consensus 213 ~~-----~~~~~l~iGl~V~~~~l~~g~~TGa~mNPARtlgPal~~~---~~~~~wVy~vaPilGAilga~ly~~~~~~~ 284 (298)
T PLN00026 213 AV-----GELAGIAVGATVMLNILVAGPSTGGSMNPVRTLGPAVAAG---NYRAIWIYLVAPTLGALAGAGTYTAVKLRE 284 (298)
T ss_pred Cc-----CCccchHHHHHHHHHHHHhcccCccccChHHHHHHHHhcC---CchheeHHHHHHHHHHHHHHHHHHHHhCcc
Confidence 21 2357899999999999999999999999999999999843 699999999999999999999999986444
No 11
>PLN00166 aquaporin TIP2; Provisional
Probab=100.00 E-value=6.4e-46 Score=327.81 Aligned_cols=229 Identities=34% Similarity=0.595 Sum_probs=188.3
Q ss_pred ccCchHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHhcCccccccCHHH
Q 022966 35 ELGKWSFYRAVIAEFIATLLFLYVTVLTVIGYKSQTDPNLNTDQCGGVGILGIAWAFGGMIFILVYCTAGISGGHINPAV 114 (289)
Q Consensus 35 ~~~~~~l~r~~~aEflgT~llvf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~i~~~~~iSGah~NPaV 114 (289)
|..+++.+|++++||+|||+|+|+++++........... .....+.+.+++++|+.+++.+++++++||+|+|||+
T Consensus 11 ~~~~~~~~~~~~aEfigTf~lv~~g~g~~~~~~~~~~~~----~~~~~~~~~ial~~Gl~v~~~i~~~g~iSGah~NPAv 86 (250)
T PLN00166 11 DSFSVASLKAYLSEFIATLLFVFAGVGSAIAFAKLTSDA----ALDPAGLVAVAVAHAFALFVGVSIAANISGGHLNPAV 86 (250)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccc----cCCCCccHHHHHHHHHHHHHHHHHHhcccccccCHHH
Confidence 344578899999999999999999999776421111000 0011235678999999999999999999999999999
Q ss_pred HHHHHHhcCCchhHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhcCCCccccCCCCcchhhhHHHHHHHHHHHHHHHHhcC
Q 022966 115 TFGLFLGRKVSLIRALLYMVAQCLGAICGCGFVKAFQKSYYNRYGGGANELADGYNKGTGLGAEIIGTFVLVYTVFSATD 194 (289)
Q Consensus 115 Tla~~l~g~~~~~~~~~Yi~aQ~lGa~~g~~l~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~E~~~T~~Lv~~v~~~~~ 194 (289)
|++.++.|+++|.+.+.|+++|++|+++|+.+++.++++.. .......++.+..++++.|+++|++|+++++...+
T Consensus 87 t~~~~l~g~~~~~~~~~y~~aq~lGa~~~a~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~E~v~Tf~Lv~~i~~~~~ 162 (250)
T PLN00166 87 TLGLAIGGNITIITGFFYWIAQCLGSIVACLLLVFVTNGES----VPTHGVAAGLGAIEGVVMEIVVTFALVYTVYATAA 162 (250)
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHhccCCC----CcccccCCCCcHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 99999999999999999999999999999999998875421 11122345678889999999999999999998766
Q ss_pred CCCCCCCCCCCcchhHHHHHHHHHHHHHhcCCCCCccchhhhHHHHHHhCCCCCCCcceehhhhhHHHHHHHHHHHHHHh
Q 022966 195 PKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNKEKAWDDQWIFWVGPFIGAFVAAFYHQYIL 274 (289)
Q Consensus 195 ~~~~~~~~~~~~~~~~~iGl~v~~~~~~~~~~tG~~~NPAr~lg~~i~~~~~~~~~~~wvy~v~p~lGai~a~~~~~~~~ 274 (289)
++++... ..+.|+.+|+.+++++++.+++||+++||||||||+++.+ .|+++|+||++|++|+++++++|+.++
T Consensus 163 ~~~~~~~---~~~~p~~iGl~v~~~~~~~~~~tG~~~NPAR~~gPal~~~---~~~~~wvywvgPi~Ga~~aa~~y~~l~ 236 (250)
T PLN00166 163 DPKKGSL---GTIAPIAIGFIVGANILAAGPFSGGSMNPARSFGPAVVSG---DFSQIWIYWVGPLVGGALAGLIYGDVF 236 (250)
T ss_pred ccccccc---ccchhHHHHHHHHHHHHcccCCCCCccCchHhhHHHHhcC---CCcccchhhHHHHHHHHHHHHHHHHHh
Confidence 5543211 3478999999999999999999999999999999999854 599999999999999999999999886
Q ss_pred hhh
Q 022966 275 RAA 277 (289)
Q Consensus 275 ~~~ 277 (289)
.+.
T Consensus 237 ~~~ 239 (250)
T PLN00166 237 IGS 239 (250)
T ss_pred ccc
Confidence 443
No 12
>PLN00027 aquaporin TIP; Provisional
Probab=100.00 E-value=9.8e-46 Score=327.63 Aligned_cols=230 Identities=34% Similarity=0.586 Sum_probs=188.4
Q ss_pred cccCchHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHhcCccccccCHH
Q 022966 34 EELGKWSFYRAVIAEFIATLLFLYVTVLTVIGYKSQTDPNLNTDQCGGVGILGIAWAFGGMIFILVYCTAGISGGHINPA 113 (289)
Q Consensus 34 ~~~~~~~l~r~~~aEflgT~llvf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~i~~~~~iSGah~NPa 113 (289)
+|...++.+|++++||+||++|+|+++++.+......... .....+.+.+++++|+++++.+++++++||||+|||
T Consensus 12 ~~~~~~~~~~~~~aEfigTf~lv~~g~g~~~~~~~~~~~~----~~~~~~~l~~~l~~Gl~v~~~i~~~~~iSGah~NPA 87 (252)
T PLN00027 12 GEASHPDALKAALAEFISTLIFVFAGEGSGMAFNKLTDNG----STTPAGLVAAALAHAFALFVAVSVGANISGGHVNPA 87 (252)
T ss_pred HhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCC----CCCCcchHHHHHHHHHHHHHHHHHHcccCccccChH
Confidence 3444567899999999999999999999865432111100 011224567899999999999999999999999999
Q ss_pred HHHHHHHhcCCchhHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhcCCCccccCCCCcchhhhHHHHHHHHHHHHHHHHhc
Q 022966 114 VTFGLFLGRKVSLIRALLYMVAQCLGAICGCGFVKAFQKSYYNRYGGGANELADGYNKGTGLGAEIIGTFVLVYTVFSAT 193 (289)
Q Consensus 114 VTla~~l~g~~~~~~~~~Yi~aQ~lGa~~g~~l~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~E~~~T~~Lv~~v~~~~ 193 (289)
+|++.++.|+++|.+.+.|+++|++|+++|+.+++.+.++.. .+.....++.+..++++.|+++||+|+++++...
T Consensus 88 vtl~~~~~g~~~~~~~~~yi~aQ~lGa~~ga~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~E~i~Tf~Lv~~i~~~~ 163 (252)
T PLN00027 88 VTFGAFIGGNITLLRGILYWIAQLLGSVVACLLLKFSTGGLE----TSAFSLSSGVGVWNAFVFEIVMTFGLVYTVYATA 163 (252)
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCcc----cccccCCCCccHHHHHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999887765321 1223334577889999999999999999999765
Q ss_pred CCCCCCCCCCCCcchhHHHHHHHHHHHHHhcCCCCCccchhhhHHHHHHhCCCCCCCcceehhhhhHHHHHHHHHHHHHH
Q 022966 194 DPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNKEKAWDDQWIFWVGPFIGAFVAAFYHQYI 273 (289)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~iGl~v~~~~~~~~~~tG~~~NPAr~lg~~i~~~~~~~~~~~wvy~v~p~lGai~a~~~~~~~ 273 (289)
.++++... ..+.|+.+|+.+..++++.+.+||+++||||||||+++.+ .|+++|+||++|++|+++++++|+++
T Consensus 164 ~~~~~~~~---~~~~p~~iGl~v~~~~~~~g~~TG~~~NPAR~~gPal~~~---~~~~~wvy~vgP~~Ga~laa~~y~~l 237 (252)
T PLN00027 164 VDPKKGDL---GIIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPAVVSW---TWTNHWVYWAGPLIGGGIAGLVYELI 237 (252)
T ss_pred cccccCCc---cchHHHHHHHHHHHHHHhcccccccccCcchhHHHHHHhh---cchhhhHHHHHHHHHHHHHHHHHHHH
Confidence 33332111 3478999999999999999999999999999999999854 59999999999999999999999999
Q ss_pred hhhh
Q 022966 274 LRAA 277 (289)
Q Consensus 274 ~~~~ 277 (289)
+.++
T Consensus 238 ~~~~ 241 (252)
T PLN00027 238 FIGS 241 (252)
T ss_pred hcCC
Confidence 8654
No 13
>PLN00183 putative aquaporin NIP7; Provisional
Probab=100.00 E-value=5.4e-44 Score=318.42 Aligned_cols=222 Identities=25% Similarity=0.370 Sum_probs=186.2
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHhcCccccccCHHHHH
Q 022966 37 GKWSFYRAVIAEFIATLLFLYVTVLTVIGYKSQTDPNLNTDQCGGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTF 116 (289)
Q Consensus 37 ~~~~l~r~~~aEflgT~llvf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~i~~~~~iSGah~NPaVTl 116 (289)
.+.+.+|++++||+|||+++|++++++....... ...+++.+++++|+++++.+++++++||||+|||+|+
T Consensus 40 ~~~~~~~~~laEfigTfllvf~~~g~~~~~~~~~---------~~~~~~~~al~~Gl~V~~~i~~~g~vSGah~NPAvTl 110 (274)
T PLN00183 40 MDLNPARMVLAEMVGTFILMFCVCGIIASTQLSG---------GEVGLLEYAATAGLTVVVVVFSIGSISGAHVNPSVTI 110 (274)
T ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHhhccccC---------CccchHHHHHHHHHHHHHHHHHhhccCccccCHHHHH
Confidence 3567789999999999999999998765422111 1124566889999999999999999999999999999
Q ss_pred HHHHhcCCchhHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhcCCCccccCCCCcchhhhHHHHHHHHHHHHHHHHhcCCC
Q 022966 117 GLFLGRKVSLIRALLYMVAQCLGAICGCGFVKAFQKSYYNRYGGGANELADGYNKGTGLGAEIIGTFVLVYTVFSATDPK 196 (289)
Q Consensus 117 a~~l~g~~~~~~~~~Yi~aQ~lGa~~g~~l~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~E~~~T~~Lv~~v~~~~~~~ 196 (289)
++++.++++|.+.+.|+++|++|+++|+.+++.+++... ......+..+..++++.|+++|++|+++++...+++
T Consensus 111 a~~l~g~i~~~~~~~Yi~aQ~lGa~~ga~l~~~~~~~~~-----~~~~~~p~~~~~~~~~~E~v~T~iLv~~i~~~~~~~ 185 (274)
T PLN00183 111 AFATFGHFPWSKVPLYITAQTVGSVLATYVGVSVYGVKA-----DLMTTKPAQGCSSAFWVEFIATFIVMFLAASLTSQP 185 (274)
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc-----ccccCCCcccHHHHHHHHHHHHHHHHHhhheeeccc
Confidence 999999999999999999999999999999988876421 111222344568999999999999999999887765
Q ss_pred CCCCCCCCCcchhHHHHHHHHHHHHHhcCCCCCccchhhhHHHHHHhCCCCCCCcceehhhhhHHHHHHHHHHHHHHhhh
Q 022966 197 RSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNKEKAWDDQWIFWVGPFIGAFVAAFYHQYILRA 276 (289)
Q Consensus 197 ~~~~~~~~~~~~~~~iGl~v~~~~~~~~~~tG~~~NPAr~lg~~i~~~~~~~~~~~wvy~v~p~lGai~a~~~~~~~~~~ 276 (289)
++. ....++.+|+++++.+++.+.+||+++||||+|+|+++. ..|+++|+||++|++|+++++++|++++.+
T Consensus 186 ~~~-----~~~~~l~iGl~v~~~v~~~g~~TG~~~NPArtlgpai~~---~~~~~~wvy~vapilGailaa~l~~~l~~~ 257 (274)
T PLN00183 186 QSL-----GHLSGFVIGIAIGLAVLITGPVSGGSMNPARSLGPAIVS---WDFKDIWIYITAPTIGAVAGALMFHLLRLR 257 (274)
T ss_pred cCC-----CCceehHHHHHHHHHHHhccCCCCCEeCHHHHHHHHHhC---CChhheehHHHHHHHHHHHHHHHHHHHhcc
Confidence 321 235689999999999999999999999999999999984 469999999999999999999999999877
Q ss_pred hhhh
Q 022966 277 AAIK 280 (289)
Q Consensus 277 ~~~~ 280 (289)
+...
T Consensus 258 ~~~~ 261 (274)
T PLN00183 258 TQPC 261 (274)
T ss_pred CCCC
Confidence 6543
No 14
>cd00333 MIP Major intrinsic protein (MIP) superfamily. Members of the MIP superfamily function as membrane channels that selectively transport water, small neutral molecules, and ions out of and between cells. The channel proteins share a common fold: the N-terminal cytosolic portion followed by six transmembrane helices, which might have arisen through gene duplication. On the basis of sequence similarity and functional characteristics, the superfamily can be subdivided into two major groups: water-selective channels called aquaporins (AQPs) and glycerol uptake facilitators (GlpFs). AQPs are found in all three kingdoms of life, while GlpFs have been characterized only within microorganisms.
Probab=100.00 E-value=1.9e-43 Score=309.74 Aligned_cols=220 Identities=41% Similarity=0.711 Sum_probs=185.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHhcCccccccCHHHHHHHHHhc
Q 022966 43 RAVIAEFIATLLFLYVTVLTVIGYKSQTDPNLNTDQCGGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLGR 122 (289)
Q Consensus 43 r~~~aEflgT~llvf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~i~~~~~iSGah~NPaVTla~~l~g 122 (289)
|++++||+||++++|.++++......... ...+.+.+++++|+.+.+.+++++++||+|+|||+|++.++.|
T Consensus 1 r~~~~E~~gT~~lv~~~~~~~~~~~~~~~--------~~~~~~~~~~~~gl~v~~~~~~~~~~sga~~NPa~t~~~~~~~ 72 (228)
T cd00333 1 RKYLAEFLGTFLLVFFGCGSVLAVKLAGG--------ASGGLLGIALAWGFAIFVLVYAVGHISGGHINPAVTLALAVGG 72 (228)
T ss_pred ChhhHHHHHHHHHHHHHhHHHhhccccCC--------CCCcHHHHHHHHHHHHHHHHHHhccCCCCeEcHHHHHHHHHhC
Confidence 57899999999999999998764332110 1123566899999999999999999999999999999999999
Q ss_pred CCchhHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhcCCCc--------cccCCCCcchhhhHHHHHHHHHHHHHHHHhcC
Q 022966 123 KVSLIRALLYMVAQCLGAICGCGFVKAFQKSYYNRYGGGA--------NELADGYNKGTGLGAEIIGTFVLVYTVFSATD 194 (289)
Q Consensus 123 ~~~~~~~~~Yi~aQ~lGa~~g~~l~~~~~~~~~~~~~~~~--------~~~~~~~s~~~~~~~E~~~T~~Lv~~v~~~~~ 194 (289)
+++|.+.+.|+++|++|+++|+.+++.++++++++.+... +.+.++.+..++++.|+++|++|+++++...+
T Consensus 73 ~~~~~~~~~y~~aq~~Ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~v~T~~Lv~~i~~~~~ 152 (228)
T cd00333 73 RFPLIRVIPYIIAQLLGAILGAALLYGLYYGLYLEFLGANNIVAGIFGTYPSPGVSNGNAFFVEFIGTFILVLVVFATTD 152 (228)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhcCCccccccceeccCCCCCccHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 9999999999999999999999999999988765543322 23456678899999999999999999998887
Q ss_pred CCCCCCCCCCCcchhHHHHHHHHHHHHHhcCCCCCccchhhhHHHHHHhCCCCCCCcceehhhhhHHHHHHHHHHHHHH
Q 022966 195 PKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNKEKAWDDQWIFWVGPFIGAFVAAFYHQYI 273 (289)
Q Consensus 195 ~~~~~~~~~~~~~~~~~iGl~v~~~~~~~~~~tG~~~NPAr~lg~~i~~~~~~~~~~~wvy~v~p~lGai~a~~~~~~~ 273 (289)
+++.... ....++.+|+++.+..++++.+||+++||||||+|+++.+....|+++|+||++|++|+++++++|+++
T Consensus 153 ~~~~~~~---~~~~~~~iGl~v~~~~~~~g~~sG~~~NPAr~~g~~i~~~~~~~~~~~~vy~vap~lGai~aa~l~~~~ 228 (228)
T cd00333 153 DPNGPPP---GGLAPLAIGLLVAAIGLAGGPITGASMNPARSLGPALFTGLARHWHYFWVYWVGPLIGAIAGALVYDYV 228 (228)
T ss_pred ccccCCC---CCcHHHHHHHHHHHHHHHhhcccccccCHhhchHHHHHhccccccceeehhhhHHHHHHHHHHHHHHhC
Confidence 6543211 346899999999999999999999999999999999985421269999999999999999999999863
No 15
>TIGR00861 MIP MIP family channel proteins. processes. Some members of the family, including the yeast FPS protein (TC #1.A.8.5.1) and tobacco NtTIPA may transport both water and small solutes.
Probab=100.00 E-value=1.2e-41 Score=296.18 Aligned_cols=216 Identities=40% Similarity=0.732 Sum_probs=177.0
Q ss_pred HHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHhcCccccccCHHHHHHHHHhcCCch
Q 022966 47 AEFIATLLFLYVTVLTVIGYKSQTDPNLNTDQCGGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLGRKVSL 126 (289)
Q Consensus 47 aEflgT~llvf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~i~~~~~iSGah~NPaVTla~~l~g~~~~ 126 (289)
+||+||++++|+++++......+..... ....+.+.+++++|+.+++.+++++++||+|+|||+|++.++.++++|
T Consensus 1 aEf~gT~~l~~~g~~~~~~~~~~~~~~~----~~~~~~~~~~l~~Gl~v~~~~~~~~~~sg~h~NPavt~~~~l~~~~~~ 76 (216)
T TIGR00861 1 AEFLGTFLLVFFGVGSALGVNVAGAYGA----VGGGQFLGVALAFGLAVATLVYCVGGISGAHLNPAVTIALLLGRRFPL 76 (216)
T ss_pred CcHHHHHHHHHHHHHHHHhhhcccccCC----CCCcchHHHHHHHHHHHHHHHHHHhcccccccCHHHHHHHHHhCCCCH
Confidence 5999999999999998765332211000 001135678999999999999999999999999999999999999999
Q ss_pred hHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhcCCCccccCCCCcchhhhHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCc
Q 022966 127 IRALLYMVAQCLGAICGCGFVKAFQKSYYNRYGGGANELADGYNKGTGLGAEIIGTFVLVYTVFSATDPKRSARDSHVPV 206 (289)
Q Consensus 127 ~~~~~Yi~aQ~lGa~~g~~l~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~E~~~T~~Lv~~v~~~~~~~~~~~~~~~~~ 206 (289)
.+.+.|+++|++|+++|+.+++.++++.+...........++.+..++++.|+++|++|+++++...+++++... ..
T Consensus 77 ~~~~~y~~aQ~~Ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~i~T~~lv~~~~~~~~~~~~~~~---~~ 153 (216)
T TIGR00861 77 KRVPVYIVAQLIGAILGAALLYGLTSGLFPGNLAVNGSGAAGVSSGQAFFVEFIGTAILVLVIFATTDPRNRVPR---GG 153 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHccccccCCccccCCCCCcccHHHHHHHHHHHHHHHHHHHheeecCCCCCCC---Cc
Confidence 999999999999999999999999887542111111222455688999999999999999999988776543222 23
Q ss_pred chhHHHHHHHHHHHHHhcCCCCCccchhhhHHHHHHhCCCCCCCcceehhhhhHHHHHHHHHHH
Q 022966 207 LAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNKEKAWDDQWIFWVGPFIGAFVAAFYH 270 (289)
Q Consensus 207 ~~~~~iGl~v~~~~~~~~~~tG~~~NPAr~lg~~i~~~~~~~~~~~wvy~v~p~lGai~a~~~~ 270 (289)
..|+.+|+.+++.++..+.+||+++||||+|+|+++.+ ...|+++|+||++|++|+++++++|
T Consensus 154 ~~~~~iG~~v~~~~~~~g~~sG~~~NPAr~l~~~l~~~-~~~~~~~~vy~vap~~Ga~~a~~~y 216 (216)
T TIGR00861 154 FAPLAIGLLVFLIHLSMGPYTGTGMNPARSLGPALFAG-LAGWGNHWVYWVGPIIGAILGALVY 216 (216)
T ss_pred cHHHHHHHHHHHHHHhCCCCcccccCchhhhhHHHHhc-cccccceeHHHHHHHHHHHHHHHhC
Confidence 68999999999999999999999999999999999853 3579999999999999999999875
No 16
>PLN00026 aquaporin NIP; Provisional
Probab=99.68 E-value=9.9e-17 Score=144.56 Aligned_cols=110 Identities=20% Similarity=0.325 Sum_probs=88.0
Q ss_pred CCCCcchhhhHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCcchhHHHHHHHHHHHHHhcCCCCCccchhhhHHHHHHhCC
Q 022966 166 ADGYNKGTGLGAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNK 245 (289)
Q Consensus 166 ~~~~s~~~~~~~E~~~T~~Lv~~v~~~~~~~~~~~~~~~~~~~~~~iGl~v~~~~~~~~~~tG~~~NPAr~lg~~i~~~~ 245 (289)
.++.+.++.++.|+++||+|++++++....+.+..........++.+|+++++.+++++.+||+|+||||++++++. +
T Consensus 65 ~~~~~~~r~~laEfiGTflLvf~g~~~~~~~~~~~~~~~~~~ial~~GlaV~~~i~~~g~ISGaHlNPAVTla~al~--g 142 (298)
T PLN00026 65 PPDVSLTRKLGAEFVGTFILIFAATAGPIVNQKYDGAETLIGNAACAGLAVMIVILSTGHISGAHLNPSLTIAFAAL--R 142 (298)
T ss_pred CCCchHHHHHHHHHHHHHHHHHHHHHHHHhccccCCccchHHHHHHHHHHHHHHHHHhhccCccccCHHHHHHHHHh--C
Confidence 34566789999999999999999985422211111111122346899999999999999999999999999999997 3
Q ss_pred CCCCCcceehhhhhHHHHHHHHHHHHHHhhhh
Q 022966 246 EKAWDDQWIFWVGPFIGAFVAAFYHQYILRAA 277 (289)
Q Consensus 246 ~~~~~~~wvy~v~p~lGai~a~~~~~~~~~~~ 277 (289)
+..|.+.|+||++|++|+++|+++++.++.+.
T Consensus 143 ~~~~~~~~~YiiaQilGAi~aa~~~~~~~~~~ 174 (298)
T PLN00026 143 HFPWKHVPAYIAAQVSASICASFALKGVFHPF 174 (298)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 56899999999999999999999999988653
No 17
>PLN00184 aquaporin NIP1; Provisional
Probab=99.67 E-value=1.7e-16 Score=143.34 Aligned_cols=108 Identities=19% Similarity=0.183 Sum_probs=86.2
Q ss_pred CCcchhhhHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCcchhHHHHHHHHHHHHHhcCCCCCccchhhhHHHHHHhCCCC
Q 022966 168 GYNKGTGLGAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNKEK 247 (289)
Q Consensus 168 ~~s~~~~~~~E~~~T~~Lv~~v~~~~~~~~~~~~~~~~~~~~~~iGl~v~~~~~~~~~~tG~~~NPAr~lg~~i~~~~~~ 247 (289)
+.+..+.++.|+++||+|+++.+.....+............++.+|+++++.+++++.+||+|+||||+|++++. ++.
T Consensus 50 ~~~~~~~~~aEfiGTflLvf~g~g~~~~~~~~~~~~~~~~iai~~Gl~v~~~i~~~g~iSGaH~NPAVTla~al~--g~~ 127 (296)
T PLN00184 50 SVPFLQKLIAEVLGTYFLVFTGCASVVVNMQNDNVVTLPGIAIVWGLTIMVLIYSLGHISGAHINPAVTIAFASC--GRF 127 (296)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCccccHHHHHHHHHHHHHHHHHhcCCCccccCHHHHHHHHHh--CCC
Confidence 345678999999999999999986543222111111122346777999999999999999999999999999996 356
Q ss_pred CCCcceehhhhhHHHHHHHHHHHHHHhhhh
Q 022966 248 AWDDQWIFWVGPFIGAFVAAFYHQYILRAA 277 (289)
Q Consensus 248 ~~~~~wvy~v~p~lGai~a~~~~~~~~~~~ 277 (289)
.|.+.|+||++|++|+++|+++++.++..+
T Consensus 128 ~~~~~~~YiiaQllGA~lga~~~~~l~~~~ 157 (296)
T PLN00184 128 PLKQVPAYVISQVIGSTLAAATLRLLFGLD 157 (296)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHhcch
Confidence 899999999999999999999999888543
No 18
>PLN00183 putative aquaporin NIP7; Provisional
Probab=99.60 E-value=2.2e-15 Score=134.84 Aligned_cols=107 Identities=18% Similarity=0.304 Sum_probs=87.7
Q ss_pred CCcchhhhHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCcchhHHHHHHHHHHHHHhcCCCCCccchhhhHHHHHHhCCCC
Q 022966 168 GYNKGTGLGAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNKEK 247 (289)
Q Consensus 168 ~~s~~~~~~~E~~~T~~Lv~~v~~~~~~~~~~~~~~~~~~~~~~iGl~v~~~~~~~~~~tG~~~NPAr~lg~~i~~~~~~ 247 (289)
+.+.++.++.|+++||+++++.+...+.++....+......++.+|+++.+.+++++.+||+++||||+|++++. ++.
T Consensus 41 ~~~~~~~~laEfigTfllvf~~~g~~~~~~~~~~~~~~~~~al~~Gl~V~~~i~~~g~vSGah~NPAvTla~~l~--g~i 118 (274)
T PLN00183 41 DLNPARMVLAEMVGTFILMFCVCGIIASTQLSGGEVGLLEYAATAGLTVVVVVFSIGSISGAHVNPSVTIAFATF--GHF 118 (274)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCccchHHHHHHHHHHHHHHHHHhhccCccccCHHHHHHHHHh--cCC
Confidence 456678999999999999999987765543322111112257799999999999999999999999999999997 346
Q ss_pred CCCcceehhhhhHHHHHHHHHHHHHHhhh
Q 022966 248 AWDDQWIFWVGPFIGAFVAAFYHQYILRA 276 (289)
Q Consensus 248 ~~~~~wvy~v~p~lGai~a~~~~~~~~~~ 276 (289)
.|.+.|+||++|++|+++|+++++.++..
T Consensus 119 ~~~~~~~Yi~aQ~lGa~~ga~l~~~~~~~ 147 (274)
T PLN00183 119 PWSKVPLYITAQTVGSVLATYVGVSVYGV 147 (274)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 79999999999999999999999888754
No 19
>PLN00182 putative aquaporin NIP4; Provisional
Probab=99.59 E-value=3.2e-15 Score=134.21 Aligned_cols=105 Identities=17% Similarity=0.233 Sum_probs=84.5
Q ss_pred CcchhhhHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCcchhHHHHHHHHHHHHHhcCCCCCccchhhhHHHHHHhCCCCC
Q 022966 169 YNKGTGLGAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNKEKA 248 (289)
Q Consensus 169 ~s~~~~~~~E~~~T~~Lv~~v~~~~~~~~~~~~~~~~~~~~~~iGl~v~~~~~~~~~~tG~~~NPAr~lg~~i~~~~~~~ 248 (289)
.+..+.++.|+++||+|+++.+......+....+......++.+|+++++.+++++.+||+|+|||+++++++. ++..
T Consensus 39 ~~~~~~~~aEflgTflLvf~g~g~~~~~~~~~~~~~~~~iala~Gl~v~~~i~~~g~iSGah~NPAVTla~~~~--~~~~ 116 (283)
T PLN00182 39 VCLTQKLIAEMIGTYFIIFSGCGVVVVNVLYGGTITFPGICVTWGLIVMVMIYSTGHISGAHFNPAVTVTFAIF--RRFP 116 (283)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCcchHHHHHHHHHHHHHHHHHhcCCCccccCHHHHHHHHHH--cCCC
Confidence 45568999999999999998886544322111111122346689999999999999999999999999999997 3578
Q ss_pred CCcceehhhhhHHHHHHHHHHHHHHhh
Q 022966 249 WDDQWIFWVGPFIGAFVAAFYHQYILR 275 (289)
Q Consensus 249 ~~~~wvy~v~p~lGai~a~~~~~~~~~ 275 (289)
|.+.|+||++|++|+++|+++++.++.
T Consensus 117 ~~~~~~Yi~aQ~lGa~~ga~~~~~~~~ 143 (283)
T PLN00182 117 WYQVPLYIGAQLTGSLLASLTLRLMFN 143 (283)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999888874
No 20
>PLN00166 aquaporin TIP2; Provisional
Probab=99.58 E-value=5.5e-15 Score=130.88 Aligned_cols=106 Identities=19% Similarity=0.312 Sum_probs=85.9
Q ss_pred CcchhhhHHHHHHHHHHHHHHHHhcCCC--CCCC---CCCCCcchhHHHHHHHHHHHHHhcCCCCCccchhhhHHHHHHh
Q 022966 169 YNKGTGLGAEIIGTFVLVYTVFSATDPK--RSAR---DSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIY 243 (289)
Q Consensus 169 ~s~~~~~~~E~~~T~~Lv~~v~~~~~~~--~~~~---~~~~~~~~~~~iGl~v~~~~~~~~~~tG~~~NPAr~lg~~i~~ 243 (289)
.+..+.++.|+++|++|+++.+...... .... ........++.+|+.+++.+++++.+||+|+||||++++.+.
T Consensus 15 ~~~~~~~~aEfigTf~lv~~g~g~~~~~~~~~~~~~~~~~~~~~ial~~Gl~v~~~i~~~g~iSGah~NPAvt~~~~l~- 93 (250)
T PLN00166 15 VASLKAYLSEFIATLLFVFAGVGSAIAFAKLTSDAALDPAGLVAVAVAHAFALFVGVSIAANISGGHLNPAVTLGLAIG- 93 (250)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccCCCCccHHHHHHHHHHHHHHHHHHhcccccccCHHHHHHHHHh-
Confidence 4567899999999999999998764431 1110 111123468889999999999999999999999999999996
Q ss_pred CCCCCCCcceehhhhhHHHHHHHHHHHHHHhhh
Q 022966 244 NKEKAWDDQWIFWVGPFIGAFVAAFYHQYILRA 276 (289)
Q Consensus 244 ~~~~~~~~~wvy~v~p~lGai~a~~~~~~~~~~ 276 (289)
++..|.+.|+||++|++|+++++.+++.++..
T Consensus 94 -g~~~~~~~~~y~~aq~lGa~~~a~~~~~~~~~ 125 (250)
T PLN00166 94 -GNITIITGFFYWIAQCLGSIVACLLLVFVTNG 125 (250)
T ss_pred -CCCCHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 34679999999999999999999999988754
No 21
>PLN00167 aquaporin TIP5; Provisional
Probab=99.56 E-value=1.1e-14 Score=129.29 Aligned_cols=106 Identities=21% Similarity=0.350 Sum_probs=86.9
Q ss_pred CcchhhhHHHHHHHHHHHHHHHHhcCCCCC--C---CCCCCCcchhHHHHHHHHHHHHHhcCCCCCccchhhhHHHHHHh
Q 022966 169 YNKGTGLGAEIIGTFVLVYTVFSATDPKRS--A---RDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIY 243 (289)
Q Consensus 169 ~s~~~~~~~E~~~T~~Lv~~v~~~~~~~~~--~---~~~~~~~~~~~~iGl~v~~~~~~~~~~tG~~~NPAr~lg~~i~~ 243 (289)
.+..+.++.|+++|++|+++.+.....++. . ..+......++.+|+++++.+++++.+||+|+|||+++++.+.
T Consensus 19 ~~~~~~~laEflgTf~lv~~~~g~~~~~~~~~~~~~~~~~~~~~i~l~~Gl~v~~~i~~~g~iSGah~NPAvtl~~~~~- 97 (256)
T PLN00167 19 RNALRSYLAEFISTFFFVFAAVGSAMSSRKLMPDAASDPSSLLIVAIANAFALSSAVYIAANISGGHVNPAVTFGMAVG- 97 (256)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccCCCCcchHHHHHHHHHHHHHHHHhhcccccccCHHHHHHHHHh-
Confidence 346789999999999999999876553321 1 1111134679999999999999999999999999999999996
Q ss_pred CCCCCCCcceehhhhhHHHHHHHHHHHHHHhhh
Q 022966 244 NKEKAWDDQWIFWVGPFIGAFVAAFYHQYILRA 276 (289)
Q Consensus 244 ~~~~~~~~~wvy~v~p~lGai~a~~~~~~~~~~ 276 (289)
++..|.+.|+||++|++|+++++.+++.++..
T Consensus 98 -g~~~~~~~~~yi~aQ~lGa~~ga~~~~~~~~~ 129 (256)
T PLN00167 98 -GHISVPTAMFYWISQMLASVMACLFLKVTTVG 129 (256)
T ss_pred -CCCcHhhhhHHHHHHHHHHHHHHHHHHHhhcc
Confidence 35679999999999999999999998887543
No 22
>PTZ00016 aquaglyceroporin; Provisional
Probab=99.56 E-value=1.2e-14 Score=131.67 Aligned_cols=106 Identities=24% Similarity=0.315 Sum_probs=85.3
Q ss_pred cchhhhHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCcchhHHHHHHHHHHHHHhcCCCCCccchhhhHHHHHHhCCCCCC
Q 022966 170 NKGTGLGAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNKEKAW 249 (289)
Q Consensus 170 s~~~~~~~E~~~T~~Lv~~v~~~~~~~~~~~~~~~~~~~~~~iGl~v~~~~~~~~~~tG~~~NPAr~lg~~i~~~~~~~~ 249 (289)
+..+.++.|+++|++|+++.+...........+......++.+|+++++..++.+.+||+|+|||+++++.+. ++..|
T Consensus 48 ~~~~~~laEfigT~llvf~g~g~~~~~~~~~~~~~~~~ial~~Glav~~~i~~~g~iSG~h~NPAVTla~~l~--g~i~~ 125 (294)
T PTZ00016 48 PNVREYVAEFLGTFVLLFFGEGVVATTHTVGNNGDYLAITIGWGLGVTFGLLVSAGISGGHLNPAVTLGNAVF--GKFPW 125 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCCCcHHHHHHHHHHHHHHHHHhcccCcCccCHHHHHHHHHh--ccCCH
Confidence 3457899999999999998887654322211111123467889999999999999999999999999999987 35689
Q ss_pred CcceehhhhhHHHHHHHHHHHHHHhhhh
Q 022966 250 DDQWIFWVGPFIGAFVAAFYHQYILRAA 277 (289)
Q Consensus 250 ~~~wvy~v~p~lGai~a~~~~~~~~~~~ 277 (289)
.+.|+||++|++|+++|+++...++.+.
T Consensus 126 ~~~~~YiiaQ~lGa~~ga~ll~~~~~~~ 153 (294)
T PTZ00016 126 KKLPGYFVAQLLGAFVGAACVYGLYYGF 153 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 9999999999999999999888777653
No 23
>PRK05420 aquaporin Z; Provisional
Probab=99.54 E-value=2.4e-14 Score=125.63 Aligned_cols=103 Identities=22% Similarity=0.186 Sum_probs=81.4
Q ss_pred hhhhHHHHHHHHHHHHHHHHhcCCCCC-CCCCCCCcchhHHHHHHHHHHHHHhcCCCCCccchhhhHHHHHHhCCCCCCC
Q 022966 172 GTGLGAEIIGTFVLVYTVFSATDPKRS-ARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNKEKAWD 250 (289)
Q Consensus 172 ~~~~~~E~~~T~~Lv~~v~~~~~~~~~-~~~~~~~~~~~~~iGl~v~~~~~~~~~~tG~~~NPAr~lg~~i~~~~~~~~~ 250 (289)
.|.++.|+++|++|+++.+......+. ...+......++.+|+++.+.+++++.+||+|+|||+++++.+. ++..|.
T Consensus 2 ~~~~laEfigT~~lv~~g~~~~~~~~~~~~~~~~~~~ial~~Gl~v~~~i~~~g~iSG~h~NPAvtl~~~~~--~~i~~~ 79 (231)
T PRK05420 2 FKKLAAEFFGTFWLVFGGCGSAVLAAAFPELGIGFLGVALAFGLTVLTMAYAVGHISGGHFNPAVSVGLWAG--GRFPAK 79 (231)
T ss_pred hHHHHHHHHHHHHHHHHHhhHHHhhcccCCCCCchHHHHHHHHHHHHHHHHHHhCcccccCCHHHHHHHHHh--CCCCHH
Confidence 478999999999999988764322111 11111122348999999999999999999999999999999997 457899
Q ss_pred cceehhhhhHHHHHHHHHHHHHHhhh
Q 022966 251 DQWIFWVGPFIGAFVAAFYHQYILRA 276 (289)
Q Consensus 251 ~~wvy~v~p~lGai~a~~~~~~~~~~ 276 (289)
+.|+||++|++|+++|+.+.+.++..
T Consensus 80 ~~~~Y~~aQ~lGa~~ga~l~~~~~~~ 105 (231)
T PRK05420 80 ELVPYIIAQVVGGIAAAAVLYLIASG 105 (231)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 99999999999999999777766643
No 24
>cd00333 MIP Major intrinsic protein (MIP) superfamily. Members of the MIP superfamily function as membrane channels that selectively transport water, small neutral molecules, and ions out of and between cells. The channel proteins share a common fold: the N-terminal cytosolic portion followed by six transmembrane helices, which might have arisen through gene duplication. On the basis of sequence similarity and functional characteristics, the superfamily can be subdivided into two major groups: water-selective channels called aquaporins (AQPs) and glycerol uptake facilitators (GlpFs). AQPs are found in all three kingdoms of life, while GlpFs have been characterized only within microorganisms.
Probab=99.52 E-value=3.9e-14 Score=124.27 Aligned_cols=105 Identities=25% Similarity=0.247 Sum_probs=85.7
Q ss_pred hhhHHHHHHHHHHHHHHHHhcCCCCCCC-CCCCCcchhHHHHHHHHHHHHHhcCCCCCccchhhhHHHHHHhCCCCCCCc
Q 022966 173 TGLGAEIIGTFVLVYTVFSATDPKRSAR-DSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNKEKAWDD 251 (289)
Q Consensus 173 ~~~~~E~~~T~~Lv~~v~~~~~~~~~~~-~~~~~~~~~~~iGl~v~~~~~~~~~~tG~~~NPAr~lg~~i~~~~~~~~~~ 251 (289)
|.++.|+++|++|+++.+....+++... ........++.+|+.+.+..++++.+||+++|||+++++.+. ++..|.+
T Consensus 1 r~~~~E~~gT~~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~v~~~~~~~~~~sga~~NPa~t~~~~~~--~~~~~~~ 78 (228)
T cd00333 1 RKYLAEFLGTFLLVFFGCGSVLAVKLAGGASGGLLGIALAWGFAIFVLVYAVGHISGGHINPAVTLALAVG--GRFPLIR 78 (228)
T ss_pred ChhhHHHHHHHHHHHHHhHHHhhccccCCCCCcHHHHHHHHHHHHHHHHHHhccCCCCeEcHHHHHHHHHh--CCCCHHH
Confidence 4578999999999999987655433221 111123568999999999999999999999999999999997 3567999
Q ss_pred ceehhhhhHHHHHHHHHHHHHHhhhhhh
Q 022966 252 QWIFWVGPFIGAFVAAFYHQYILRAAAI 279 (289)
Q Consensus 252 ~wvy~v~p~lGai~a~~~~~~~~~~~~~ 279 (289)
.|+||++|++|+++++.+++.++.++..
T Consensus 79 ~~~y~~aq~~Ga~~~~~~~~~~~~~~~~ 106 (228)
T cd00333 79 VIPYIIAQLLGAILGAALLYGLYYGLYL 106 (228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHh
Confidence 9999999999999999999988876533
No 25
>PLN00027 aquaporin TIP; Provisional
Probab=99.52 E-value=4.7e-14 Score=125.27 Aligned_cols=104 Identities=22% Similarity=0.332 Sum_probs=82.9
Q ss_pred cchhhhHHHHHHHHHHHHHHHHhcC--C--CCCCCC-CCCCcchhHHHHHHHHHHHHHhcCCCCCccchhhhHHHHHHhC
Q 022966 170 NKGTGLGAEIIGTFVLVYTVFSATD--P--KRSARD-SHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYN 244 (289)
Q Consensus 170 s~~~~~~~E~~~T~~Lv~~v~~~~~--~--~~~~~~-~~~~~~~~~~iGl~v~~~~~~~~~~tG~~~NPAr~lg~~i~~~ 244 (289)
...+.++.|+++|++|+++.+.... + ....+. .......++.+|+++.+.+++.+.+||+|+||||++++.+.
T Consensus 18 ~~~~~~~aEfigTf~lv~~g~g~~~~~~~~~~~~~~~~~~~l~~~l~~Gl~v~~~i~~~~~iSGah~NPAvtl~~~~~-- 95 (252)
T PLN00027 18 DALKAALAEFISTLIFVFAGEGSGMAFNKLTDNGSTTPAGLVAAALAHAFALFVAVSVGANISGGHVNPAVTFGAFIG-- 95 (252)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCCCcchHHHHHHHHHHHHHHHHHHcccCccccChHHHHHHHHh--
Confidence 3568899999999999998886531 1 111110 11123579999999999999999999999999999999975
Q ss_pred CCCCCCcceehhhhhHHHHHHHHHHHHHHhh
Q 022966 245 KEKAWDDQWIFWVGPFIGAFVAAFYHQYILR 275 (289)
Q Consensus 245 ~~~~~~~~wvy~v~p~lGai~a~~~~~~~~~ 275 (289)
++..|.+.|+||++|++|+++++++++++..
T Consensus 96 g~~~~~~~~~yi~aQ~lGa~~ga~~~~~~~~ 126 (252)
T PLN00027 96 GNITLLRGILYWIAQLLGSVVACLLLKFSTG 126 (252)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 3567899999999999999999999987753
No 26
>COG0580 GlpF Glycerol uptake facilitator and related permeases (Major Intrinsic Protein Family) [Carbohydrate transport and metabolism]
Probab=99.48 E-value=1.4e-13 Score=120.04 Aligned_cols=117 Identities=25% Similarity=0.314 Sum_probs=89.8
Q ss_pred chhhhHHHHHHHHHHHHHHHHh---cCCCCCCCCCCCCcchhHHHHHHHHHHHHHhcCCCCCccchhhhHHHHHHhCCCC
Q 022966 171 KGTGLGAEIIGTFVLVYTVFSA---TDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNKEK 247 (289)
Q Consensus 171 ~~~~~~~E~~~T~~Lv~~v~~~---~~~~~~~~~~~~~~~~~~~iGl~v~~~~~~~~~~tG~~~NPAr~lg~~i~~~~~~ 247 (289)
..+.++.||++|++|++....+ ..-+..+..........+.+|+.+.+.+++.+.+||+|+|||.+++.++. ++.
T Consensus 4 ~~~~~~aEflGT~~Li~~G~G~~a~~~l~~~~~~~~~~~~i~~~wGl~V~~~iy~~g~iSGaHlNPAVTi~la~~--g~f 81 (241)
T COG0580 4 LTKKLLAEFLGTFLLIFFGNGSVAAVALKGSKALGGGWLGIALAWGLGVLVAIYAFGGISGAHLNPAVTIALAVR--GRF 81 (241)
T ss_pred HHHHHHHHHHHHHHHHHhhccHHHHHHhccccccccceeehhHHHHHHHHHHHHhccCcCccccChHHHHHHHHh--CCC
Confidence 4566899999999999966532 12112111122234579999999999999999999999999999999987 457
Q ss_pred CCCcceehhhhhHHHHHHHHHHHHHHhhhhhhh-------hcccccCCC
Q 022966 248 AWDDQWIFWVGPFIGAFVAAFYHQYILRAAAIK-------ALGSFRSNA 289 (289)
Q Consensus 248 ~~~~~wvy~v~p~lGai~a~~~~~~~~~~~~~~-------~~~~~~~~~ 289 (289)
+|.+...||++|++|+++|+.+...+++++-.+ ..+.+.|.|
T Consensus 82 p~~~v~~YivAQ~lGA~~ga~l~~~~~~~~~~~~~~~~~~~~g~~~t~p 130 (241)
T COG0580 82 PWRKVLPYIVAQVLGAFAGAALLYLLYYGKILETEGDPLASLGAFSTSP 130 (241)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhcCCchhhccccccCC
Confidence 899999999999999999998877777665332 356666665
No 27
>KOG0224 consensus Aquaporin (major intrinsic protein family) [Carbohydrate transport and metabolism]
Probab=99.42 E-value=3.4e-13 Score=119.13 Aligned_cols=106 Identities=26% Similarity=0.310 Sum_probs=84.1
Q ss_pred cchhhhHHHHHHHHHHHHHHHHhcCCCCCCC-CCCCCcchhHHHHHHHHHHHHHhcCCCCCccchhhhHHHHHHhCCCCC
Q 022966 170 NKGTGLGAEIIGTFVLVYTVFSATDPKRSAR-DSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNKEKA 248 (289)
Q Consensus 170 s~~~~~~~E~~~T~~Lv~~v~~~~~~~~~~~-~~~~~~~~~~~iGl~v~~~~~~~~~~tG~~~NPAr~lg~~i~~~~~~~ 248 (289)
...|.+++||++|++|++.-+++..+....+ ..+......+.+|+++++.+++.+.+||+|+|||++|+..++ ++..
T Consensus 30 ~l~Re~LAEFlGT~vL~~~G~g~v~Q~vls~g~~g~~~~vnlgwg~av~~gVyvag~iSGgHlNPAVS~a~~~~--g~~p 107 (316)
T KOG0224|consen 30 ELLREFLAEFLGTFVLVVFGLGSVAQAVLSGGTGGSFIGVNLGWGFAVMMGVYVAGRISGGHLNPAVSLAMCIL--GRLP 107 (316)
T ss_pred HHHHHHHHHHHhHHHHHhhccceeEEEEeccCCCCceEEEEehHhHHHHHHHHhhccccccccCHHHHHHHHHh--cCCC
Confidence 3568899999999999997776554433221 111134558899999999999999999999999999999998 4689
Q ss_pred CCcceehhhhhHHHHHHHHHHHHHHhhhh
Q 022966 249 WDDQWIFWVGPFIGAFVAAFYHQYILRAA 277 (289)
Q Consensus 249 ~~~~wvy~v~p~lGai~a~~~~~~~~~~~ 277 (289)
|.+..+|.++|++||++|+...-.++.+.
T Consensus 108 ~~k~p~Y~~aQ~iGAF~gaa~~y~~y~d~ 136 (316)
T KOG0224|consen 108 WKKFPVYVLAQFIGAFLGAATVYGLYYDA 136 (316)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999986544445444
No 28
>TIGR00861 MIP MIP family channel proteins. processes. Some members of the family, including the yeast FPS protein (TC #1.A.8.5.1) and tobacco NtTIPA may transport both water and small solutes.
Probab=99.41 E-value=4e-13 Score=116.92 Aligned_cols=99 Identities=22% Similarity=0.236 Sum_probs=80.2
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCC---CCCC--CCcchhHHHHHHHHHHHHHhcCCCCCccchhhhHHHHHHhCCCCCCCc
Q 022966 177 AEIIGTFVLVYTVFSATDPKRSA---RDSH--VPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNKEKAWDD 251 (289)
Q Consensus 177 ~E~~~T~~Lv~~v~~~~~~~~~~---~~~~--~~~~~~~~iGl~v~~~~~~~~~~tG~~~NPAr~lg~~i~~~~~~~~~~ 251 (289)
.|+++|++|+++.+....+.+.+ +..+ .....++.+|+.+....++.+.+||+|+|||+++++.+. ++.+|.+
T Consensus 1 aEf~gT~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~Gl~v~~~~~~~~~~sg~h~NPavt~~~~l~--~~~~~~~ 78 (216)
T TIGR00861 1 AEFLGTFLLVFFGVGSALGVNVAGAYGAVGGGQFLGVALAFGLAVATLVYCVGGISGAHLNPAVTIALLLG--RRFPLKR 78 (216)
T ss_pred CcHHHHHHHHHHHHHHHHhhhcccccCCCCCcchHHHHHHHHHHHHHHHHHHhcccccccCHHHHHHHHHh--CCCCHHH
Confidence 49999999999988654331111 1111 123568999999999999999999999999999999997 3567999
Q ss_pred ceehhhhhHHHHHHHHHHHHHHhhhh
Q 022966 252 QWIFWVGPFIGAFVAAFYHQYILRAA 277 (289)
Q Consensus 252 ~wvy~v~p~lGai~a~~~~~~~~~~~ 277 (289)
.|+||++|++|+++++++++.++++.
T Consensus 79 ~~~y~~aQ~~Ga~~~~~~~~~~~~~~ 104 (216)
T TIGR00861 79 VPVYIVAQLIGAILGAALLYGLTSGL 104 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcccc
Confidence 99999999999999999998887664
No 29
>KOG0223 consensus Aquaporin (major intrinsic protein family) [Carbohydrate transport and metabolism]
Probab=99.35 E-value=2.2e-12 Score=112.76 Aligned_cols=108 Identities=21% Similarity=0.217 Sum_probs=88.4
Q ss_pred CCcchhhhHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCcchhHHHHHHHHHHHHHhcCCCCCccchhhhHHHHHHhCCCC
Q 022966 168 GYNKGTGLGAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNKEK 247 (289)
Q Consensus 168 ~~s~~~~~~~E~~~T~~Lv~~v~~~~~~~~~~~~~~~~~~~~~~iGl~v~~~~~~~~~~tG~~~NPAr~lg~~i~~~~~~ 247 (289)
..+..|.++.||++|+++++..+..................++..|+++++.+++.+.+||+|+|||.+++..+. ++.
T Consensus 7 ~~~~~~~~~aEF~~T~~~vf~g~~~~~~~~~~~~~~~l~~ial~~Gl~v~v~i~~~g~iSGaH~NPAVT~a~~~~--~~i 84 (238)
T KOG0223|consen 7 SVSFLRALIAEFLATFLFVFAGCGSVVVNPKYGGPVGLLGIALAFGLAVFVLVYSTGHISGAHFNPAVTLAFAVG--GKI 84 (238)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCchhHHHHHHHHHHHHHHHhhhccccccccCHHHHHHHHHh--CCC
Confidence 345679999999999999998885443322111111134578999999999999999999999999999999986 357
Q ss_pred CCCcceehhhhhHHHHHHHHHHHHHHhhhh
Q 022966 248 AWDDQWIFWVGPFIGAFVAAFYHQYILRAA 277 (289)
Q Consensus 248 ~~~~~wvy~v~p~lGai~a~~~~~~~~~~~ 277 (289)
.+.+...||++|++|+++|+.+.+.+++.+
T Consensus 85 sl~~~~~Y~vaQ~lGa~~g~~~l~~~~~~~ 114 (238)
T KOG0223|consen 85 SLFRAVAYIVAQLLGAIAGAALLKVVTPGQ 114 (238)
T ss_pred cHHHhHHHHHHHHHHHHHHHHHHheecCcc
Confidence 888999999999999999999999888774
No 30
>PF00230 MIP: Major intrinsic protein; InterPro: IPR000425 A number of transmembrane (TM) channel proteins can be grouped together on the basis of sequence similarities [, , , , ]. These include: Mammalian major intrinsic protein (MIP). MIP is the major component of lens fibre gap junctions. Mammalian aquaporins []. These proteins form water- specific channels that provide the plasma membranes of red cells and kidney prox imal and collecting tubules with high permeability to water, thereby permitting water to move in the direction of an osmotic gradient. Soybean nodulin-26, a major component of the peribacteroid membrane induced during nodulation in legume roots after Rhizobium infection. Plants tonoplast intrinsic proteins (TIP). There are various isoforms of TIP : alpha (seed), gamma, Rt (root), and Wsi (water-stress induced). These proteins may allow the diffusion of water, amino acids and/or peptides from the tonoplas t interior to the cytoplasm. Bacterial glycerol facilitator protein (gene glpF), which facilitates the mo vement of glycerol across the cytoplasmic membrane. Salmonella typhimurium propanediol diffusion fac ilitator (gene pduF). Yeast FPS1, a glycerol uptake/efflux facilitator protein. Drosophila neurogenic protein 'big brain' (bib). This protein may mediate in tercellular communication; it may functions by allowing the transport of certain molecules(s) and thereby sending a signal for an exodermal cell to become an ep idermoblast instead of a neuroblast. Yeast hypothetical protein YFL054c. A hypothetical protein from the pepX region of Lactococcus lactis. The structures of various members of the MIP family have been determined by means of X-ray diffraction [, , ], revealing the fold to comprise a right-handed bundle of 6 transmembrane (TM) alpha-helices [, , ]. Similarities in the N-and C-terminal halves of the molecule suggest that the proteins may have arisen through tandem, intragenic duplication of an ancestral protein that contained 3 TM domains []. Some of the proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins []. Aquaporin-CHIP (Aquaporin 1) belongs to the Colton blood group system and is associated with Co(a/b) antigen.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3NE2_A 2C32_A 1YMG_A 2B6P_A 3C02_A 2B5F_D 3CN6_A 3CN5_A 1Z98_M 3CLL_A ....
Probab=99.27 E-value=3.1e-12 Score=112.10 Aligned_cols=106 Identities=25% Similarity=0.369 Sum_probs=82.3
Q ss_pred cchhhhHHHHHHHHHHHHHHHHhc---CCCCCCCC-C--CCCcchhHHHHHHHHHHHHHhcCCCCCccchhhhHHHHHHh
Q 022966 170 NKGTGLGAEIIGTFVLVYTVFSAT---DPKRSARD-S--HVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIY 243 (289)
Q Consensus 170 s~~~~~~~E~~~T~~Lv~~v~~~~---~~~~~~~~-~--~~~~~~~~~iGl~v~~~~~~~~~~tG~~~NPAr~lg~~i~~ 243 (289)
+..|.++.|+++|+++++...... ........ + ......++..|+.+++..++++.+||+|+|||.+++..+.
T Consensus 6 ~~~r~~~aEfigT~~lvf~~~~~~~~~~~~~~~~~~~~~~~~~~ial~~g~~~~~~i~~~~~iSGaH~NPaVTla~~l~- 84 (227)
T PF00230_consen 6 SLWRKFLAEFIGTFLLVFFGCGSVAALNGSTSSSGSDVSGGWLQIALAWGLALAALIYAFGPISGAHFNPAVTLAFALT- 84 (227)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSTTSTTSSHHHHHHHHHHHHHHHHHHHHHHHHHTSS-SHHHHHHHHHT-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccHHHHHHHHHHhhhhhhhhhhhccccccccchhhheeee-
Confidence 467899999999999999777521 22211110 0 0122456677999999999999999999999999999986
Q ss_pred CCCCCCCcceehhhhhHHHHHHHHHHHHHHhhhh
Q 022966 244 NKEKAWDDQWIFWVGPFIGAFVAAFYHQYILRAA 277 (289)
Q Consensus 244 ~~~~~~~~~wvy~v~p~lGai~a~~~~~~~~~~~ 277 (289)
++..|.+...|+++|++|+++|+.+.+.++++.
T Consensus 85 -g~~~~~~~~~Yi~aQ~lGa~~g~~l~~~~~~~~ 117 (227)
T PF00230_consen 85 -GRISWKKAIVYIIAQFLGAFLGALLVYALYPDS 117 (227)
T ss_dssp -TSSSHHHHHHHHHHHHHHHHHHHHHHHHHSTHH
T ss_pred -eeecccceeeEEeeccccccccccchhhcccCc
Confidence 467899999999999999999999998888775
No 31
>PRK10805 formate transporter; Provisional
Probab=95.17 E-value=2.2 Score=38.74 Aligned_cols=107 Identities=10% Similarity=0.078 Sum_probs=60.1
Q ss_pred hHHHHHHHHHHHHHHHHHhcC-ccccccCHHHHHHHHHhcCCchhHHHHHHHhhhhhHHHHHHHHHHHhhh-h-hhhcCC
Q 022966 84 ILGIAWAFGGMIFILVYCTAG-ISGGHINPAVTFGLFLGRKVSLIRALLYMVAQCLGAICGCGFVKAFQKS-Y-YNRYGG 160 (289)
Q Consensus 84 ~~~~~~~~g~~v~~~i~~~~~-iSGah~NPaVTla~~l~g~~~~~~~~~Yi~aQ~lGa~~g~~l~~~~~~~-~-~~~~~~ 160 (289)
.+..++.+.+.+.+.+..-+. .+| |-..++ ..+.+|.++++.+-.|.-=++|=++|++++-.+... . .....+
T Consensus 68 ~ll~~~~F~vGlilIvl~g~eLFTg---n~l~~~-~~~~~~~~~~~~lr~w~iv~~GNliGal~~a~l~~~s~~~~~~~~ 143 (285)
T PRK10805 68 KLVGGICFSLGLILCVVCGADLFTS---TVLIVV-AKASGRITWGQLAKNWLNVYFGNLVGALLFVLLMWLSGEYMTANG 143 (285)
T ss_pred HHHHHHHHHHHHHHHHHhCcccchh---hHHHHH-HHHcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccCcc
Confidence 344466666666666655554 344 655554 467889999999866666666666666554333221 0 000000
Q ss_pred C-------ccccCCCCcchhhhHHHHHHHHHHHHHHHHhcC
Q 022966 161 G-------ANELADGYNKGTGLGAEIIGTFVLVYTVFSATD 194 (289)
Q Consensus 161 ~-------~~~~~~~~s~~~~~~~E~~~T~~Lv~~v~~~~~ 194 (289)
. .....-+.++.+.|+-=.+|-++.+..++....
T Consensus 144 ~~~~~~~~~a~~K~~~~~~~~f~~gI~CN~lVclaV~~~~~ 184 (285)
T PRK10805 144 QWGLNVLQTADHKVHHTFIEAVCLGILANLMVCLAVWMSYS 184 (285)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 0 000012345677787778888888887775443
No 32
>COG2116 FocA Formate/nitrite family of transporters [Inorganic ion transport and metabolism]
Probab=94.75 E-value=2.9 Score=37.39 Aligned_cols=186 Identities=16% Similarity=0.126 Sum_probs=101.4
Q ss_pred chhHHHHHHHHHHHHHHHHHhcCccccccCHHHHHHHHHhcCCchhHHHHHHHhhhhhHHHHHHHHHHHhhhhh-hhcCC
Q 022966 82 VGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLGRKVSLIRALLYMVAQCLGAICGCGFVKAFQKSYY-NRYGG 160 (289)
Q Consensus 82 ~~~~~~~~~~g~~v~~~i~~~~~iSGah~NPaVTla~~l~g~~~~~~~~~Yi~aQ~lGa~~g~~l~~~~~~~~~-~~~~~ 160 (289)
...+.-++.+++++.+.+++.+..-=+ |=-.+..-...++++|++.+.-++-=.+|=++|++++..++.-.- .....
T Consensus 62 ~~~lvg~~~F~~GLilVv~~g~ELfT~--n~m~~t~~~~~k~Is~~~ll~~w~~v~lgNliGa~~~a~l~~~~g~~~~~~ 139 (265)
T COG2116 62 LAKLVGGLVFSLGLILVVIAGSELFTS--NTMLLTVGVLSKKISWGQLLRNWLVVYLGNLIGALFVALLFHLSGFNLTAN 139 (265)
T ss_pred hHHHHHHHHHHHHHHHhhhhCcccccc--chhHHHHHHHhCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccc
Confidence 345666777777777777665543211 444444455678999999999988888888888887766652110 00111
Q ss_pred Ccc--------ccCCCCcchhhhHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCcchhHHHHHHHHHHHHHhcCCCCCccc
Q 022966 161 GAN--------ELADGYNKGTGLGAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGIN 232 (289)
Q Consensus 161 ~~~--------~~~~~~s~~~~~~~E~~~T~~Lv~~v~~~~~~~~~~~~~~~~~~~~~~iGl~v~~~~~~~~~~tG~~~N 232 (289)
+.. .-.-+.+..+.|.--.+|-++.+..++....-|... -. .+.+..-+..+...++.=...|
T Consensus 140 ~~~~~~~~~~a~~K~~~t~~~~F~~GI~cN~lVclAvwm~~~~k~~~-------~K--~~~m~~pv~~Fv~~GfeH~VAN 210 (265)
T COG2116 140 GQWGLFVLGVAEHKLHHTFLEAFAKGILCNWLVCLAVWMSYSAKDGA-------AK--IFAIILPVMLFVASGFEHSVAN 210 (265)
T ss_pred chhHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHhcccchh-------hH--HHHHHHHHHHHHHcCCceeeeh
Confidence 111 001233456777777777777777777654433221 11 2222222333344444545566
Q ss_pred hhhhHHHHHHhCCCCCCCc-ceeh----hhhhHHH-HHHHHHHHHHHhhhhhh
Q 022966 233 PARSFGAAVIYNKEKAWDD-QWIF----WVGPFIG-AFVAAFYHQYILRAAAI 279 (289)
Q Consensus 233 PAr~lg~~i~~~~~~~~~~-~wvy----~v~p~lG-ai~a~~~~~~~~~~~~~ 279 (289)
-..-- ......+...|.+ .|-- .+|-++| +++-++.|+++++.+..
T Consensus 211 m~~i~-~~~~~~~~~~~~~fi~~Nlipv~lGNivGG~v~vgl~Y~~~~~~~~~ 262 (265)
T COG2116 211 MFMIP-WAAVFSGALTWADFILKNLIPVTLGNIVGGAVFVGLMYWYLYRKQNR 262 (265)
T ss_pred HHHHH-HHHHcCChhhhHHHHHHHHHHHHHhchhcchhhhhHHHHHhcccccc
Confidence 33322 2222223345555 3322 2455555 56667888888876544
No 33
>PRK11562 nitrite transporter NirC; Provisional
Probab=89.61 E-value=15 Score=33.01 Aligned_cols=187 Identities=10% Similarity=0.042 Sum_probs=95.5
Q ss_pred HHHHHHHHHHHHHHHHHhcCc-cccccCHHHHHHHHHhcCCchhHHHHHHHhhhhhHHHHHHHHHHHhhhh---hhhcCC
Q 022966 85 LGIAWAFGGMIFILVYCTAGI-SGGHINPAVTFGLFLGRKVSLIRALLYMVAQCLGAICGCGFVKAFQKSY---YNRYGG 160 (289)
Q Consensus 85 ~~~~~~~g~~v~~~i~~~~~i-SGah~NPaVTla~~l~g~~~~~~~~~Yi~aQ~lGa~~g~~l~~~~~~~~---~~~~~~ 160 (289)
+..+..+++++.+.++.-+.. +| |=......++.||.++++.+..+.-=++|=++|+++.-.++... ......
T Consensus 59 li~g~~F~~GLilVi~~G~eLFTg---n~~~~~~~~~~~~~s~~~~lr~w~iv~~GNliGa~~~A~l~~~~~~~~~~~~~ 135 (268)
T PRK11562 59 LVMGATFGIALTLVIIAGSELFTG---HTMFLTFGVKAGTISHGQMWAILPQTWLGNLVGSVFVALLYSWGGGSLLPVDT 135 (268)
T ss_pred HHHHHHHHHHHHHHHHhCcccccc---chHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccchh
Confidence 334556666666666554442 22 44444456677889999998888877777777777655543211 110000
Q ss_pred Cc----cccCCCCcchhhhHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCcchhHHHHHHHHHHHHHhcCCCCCccchhhh
Q 022966 161 GA----NELADGYNKGTGLGAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARS 236 (289)
Q Consensus 161 ~~----~~~~~~~s~~~~~~~E~~~T~~Lv~~v~~~~~~~~~~~~~~~~~~~~~~iGl~v~~~~~~~~~~tG~~~NPAr~ 236 (289)
.. ....-+.+..+.|+-=.+|-++....++.....+.. .....+.+.+.++ ......=...|=- -
T Consensus 136 ~~~~~ia~~K~~~~~~~~f~~gI~CNwLVclavw~~~~~~~~------gKi~~i~~pI~~F----v~~GFEH~IANm~-~ 204 (268)
T PRK11562 136 SIVHSVALAKTTAPAMVLFFKGALCNWLVCLAIWMAIRTEGA------AKFIAIWWCLLAF----IASGYEHSVANMT-L 204 (268)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHhcccc------chhHHHHHHHHHH----HHcCCcchhHhHH-H
Confidence 00 001123456677777788888888777754432211 1122222222222 2233333445522 2
Q ss_pred HHHHHHhCC--CCCCCc---cee-hhhhhHHHH-HHHHHHHHHHhhhhhhhhcccc
Q 022966 237 FGAAVIYNK--EKAWDD---QWI-FWVGPFIGA-FVAAFYHQYILRAAAIKALGSF 285 (289)
Q Consensus 237 lg~~i~~~~--~~~~~~---~wv-y~v~p~lGa-i~a~~~~~~~~~~~~~~~~~~~ 285 (289)
+...++... ...|.. .++ -.+|-++|+ ++-++.|.++++.+..+...+|
T Consensus 205 ~~l~~~~~~~~~~~~~~~~~nlipvtLGNivGG~v~vg~~y~~~~~~~~~~~~~~~ 260 (268)
T PRK11562 205 FALSWFGHHSEAYTLAGIGHNLLWVTLGNTLSGAVFMGLGYWYATPKANRPVAAKF 260 (268)
T ss_pred HHHHHHccCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcCchhhhH
Confidence 333333211 111211 122 247888887 5667888888876655444444
No 34
>PF01226 Form_Nir_trans: Formate/nitrite transporter; InterPro: IPR000292 Proteins in this entry belong to the Formate-Nitrite Transporter (FNT) family (TC 2.A.44). The prokaryotic proteins of the FNT family probably function in the transport of the structurally related compounds, formate and nitrite. The homologous yeast protein may function as a short chain aliphatic carboxylate H+ symporter, transporting formate, acetate and propionate, and functioning primarily as an acetate uptake permease.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3Q7K_H 3KLY_E 3KLZ_A 3TDX_C 3TE2_B 3TDS_B 3TDR_E 3TDO_C 3TE1_B 3TDP_C ....
Probab=77.50 E-value=51 Score=29.22 Aligned_cols=112 Identities=15% Similarity=0.059 Sum_probs=67.6
Q ss_pred hhHHHHHHHHHHHHHHHHHhcCccccccCHHHHHHHHHhcCCchhHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhcCCC-
Q 022966 83 GILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLGRKVSLIRALLYMVAQCLGAICGCGFVKAFQKSYYNRYGGG- 161 (289)
Q Consensus 83 ~~~~~~~~~g~~v~~~i~~~~~iSGah~NPaVTla~~l~g~~~~~~~~~Yi~aQ~lGa~~g~~l~~~~~~~~~~~~~~~- 161 (289)
..+..++.+++++.+.+..-+..-=+ |-......++.||.+|++.+.-+.-=++|=++|+.+.-.+........+.+
T Consensus 56 ~~l~~g~~F~~Gl~lIv~~g~eLfTg--n~~~~~~~~~~~~~~~~~~l~~w~~v~~gNliG~~~~a~l~~~~~~~~~~~~ 133 (250)
T PF01226_consen 56 AKLVGGLVFPIGLVLIVFLGGELFTG--NMMVMTLALLNKRISWKKLLRNWGIVYLGNLIGALLFAYLFAFSGGFMSSPA 133 (250)
T ss_dssp HHHHHHHHHTHHHHHHHHHT---TTT--TCHHHHHHHCTTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTGGGTTTH
T ss_pred HHHHHHHHHHHHHHHHHHhcchhccc--chHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccHH
Confidence 34556777777766666665443212 667666778889999999888888777777777776555543211100000
Q ss_pred -------ccccCCCCcchhhhHHHHHHHHHHHHHHHHhcCCC
Q 022966 162 -------ANELADGYNKGTGLGAEIIGTFVLVYTVFSATDPK 196 (289)
Q Consensus 162 -------~~~~~~~~s~~~~~~~E~~~T~~Lv~~v~~~~~~~ 196 (289)
.....-+.+.++.|+-=.++.++....++.....|
T Consensus 134 ~~~~~~~~a~~K~~~~~~~~f~~gI~cN~lVclav~~~~~~~ 175 (250)
T PF01226_consen 134 MGEYLISVAEHKVSHTFWELFFRGILCNWLVCLAVWLAFAAK 175 (250)
T ss_dssp HHHHHHHHHHCCSSS-HHHHHHHHHHHHHHHHHHHHHHCT-S
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 00111234677888888888888888888665444
No 35
>TIGR00790 fnt formate/nitrite transporter. symport. HCO2 - efflux may be driven by the membrane potential by a uniport mechanism or by H+ antiport.
Probab=74.06 E-value=62 Score=28.46 Aligned_cols=107 Identities=17% Similarity=0.112 Sum_probs=60.8
Q ss_pred hHHHHHHHHHHHHHHHHHhcC-ccccccCHHHHHHHHHhcCCchhHHHHHHHhhhhhHHHHHHHHHHHhhhhhh-hcCC-
Q 022966 84 ILGIAWAFGGMIFILVYCTAG-ISGGHINPAVTFGLFLGRKVSLIRALLYMVAQCLGAICGCGFVKAFQKSYYN-RYGG- 160 (289)
Q Consensus 84 ~~~~~~~~g~~v~~~i~~~~~-iSGah~NPaVTla~~l~g~~~~~~~~~Yi~aQ~lGa~~g~~l~~~~~~~~~~-~~~~- 160 (289)
.+..++.+.+.+.+.++.-+. .+| |-......++.||.+|.+.+-.+.-=++|=++|+.+.-.+...... ....
T Consensus 43 ~~l~~~~F~~gl~~Iv~~g~eLfTg---n~~~~~~~~~~~~~~~~~~l~~w~~~~~gNlvG~~~~a~l~~~~~~~~~~~~ 119 (239)
T TIGR00790 43 KLVGGATFPIGLILVVIAGSDLFTG---NTLFVTMALLRGKISWGDLLINWVVSWLGNLVGALFVAYLFSYLGGILTANG 119 (239)
T ss_pred HHHHHHHHHHHHheeeeeCcccccc---chHHHHHHHHcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCCcc
Confidence 344456666555544444333 122 4444445577899999999988888888888777765554422100 0000
Q ss_pred C-------ccccCCCCcchhhhHHHHHHHHHHHHHHHHhc
Q 022966 161 G-------ANELADGYNKGTGLGAEIIGTFVLVYTVFSAT 193 (289)
Q Consensus 161 ~-------~~~~~~~~s~~~~~~~E~~~T~~Lv~~v~~~~ 193 (289)
. .....-+.+..+.|+-=+++.++..+.++...
T Consensus 120 ~~~~~~~~~a~~K~~~~~~~~f~~gilcn~lV~lav~~~~ 159 (239)
T TIGR00790 120 PWGVGSLAIAEHKAHHTFVEAFFLGILCNWLVCLAVWMSL 159 (239)
T ss_pred HHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 00011234667777777888888888776433
No 36
>PRK09713 focB putative formate transporter; Provisional
Probab=68.81 E-value=91 Score=28.25 Aligned_cols=109 Identities=10% Similarity=0.000 Sum_probs=57.7
Q ss_pred HHHHHHHHHHHHHHHHHhcCccccccCHHHHHHHHHhcCCchhHHHHHHHhhhhhHHHHHHHHHHHhhh-hhhhcCCCc-
Q 022966 85 LGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLGRKVSLIRALLYMVAQCLGAICGCGFVKAFQKS-YYNRYGGGA- 162 (289)
Q Consensus 85 ~~~~~~~g~~v~~~i~~~~~iSGah~NPaVTla~~l~g~~~~~~~~~Yi~aQ~lGa~~g~~l~~~~~~~-~~~~~~~~~- 162 (289)
+..++.+.+.+.+.++.-+..-=+ |=. ++.-...++.+|++.+..+.-=++|=++|+++.-.+... .....+...
T Consensus 68 ll~g~~F~vGLilIv~~g~ELfTg--N~~-~~~~~~~~~i~~~~~l~~w~iv~~GNlvGal~~A~l~~~s~~~~~~~~~~ 144 (282)
T PRK09713 68 LVGGLCFTLGFILLAVCGTSLFTS--SVM-TVMAKSRGVISWRTWLINALLVACGNLAGIACFSLLIWFSGLVMSENAMW 144 (282)
T ss_pred HHHHHHHHHHHHHHHHhCccccHH--HHH-HHHHHHhCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccchhH
Confidence 444666666666666664442212 222 223356788999998865555555555555444333221 110000000
Q ss_pred -------cccCCCCcchhhhHHHHHHHHHHHHHHHHhcCCC
Q 022966 163 -------NELADGYNKGTGLGAEIIGTFVLVYTVFSATDPK 196 (289)
Q Consensus 163 -------~~~~~~~s~~~~~~~E~~~T~~Lv~~v~~~~~~~ 196 (289)
....-+.++.+.|+--.+|-++.+..++.....|
T Consensus 145 ~~~~~~ia~~K~~~~~~~~F~~gI~CN~lVclaV~~~~~~k 185 (282)
T PRK09713 145 GVAVLHCAEGKMHHTFTESVSLGIMCNLMVCLALWMSYCGR 185 (282)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 0011234677888888888888888887554333
No 37
>PF03033 Glyco_transf_28: Glycosyltransferase family 28 N-terminal domain; InterPro: IPR004276 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC).; GO: 0016758 transferase activity, transferring hexosyl groups, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2IYF_B 2YJN_A 2P6P_A 1PNV_A 3H4T_A 3H4I_A 1PN3_B 3IA7_B 1NLM_B 1F0K_B ....
Probab=46.27 E-value=7.3 Score=30.38 Aligned_cols=20 Identities=30% Similarity=0.551 Sum_probs=17.2
Q ss_pred CccccccCHHHHHHHHHhcC
Q 022966 104 GISGGHINPAVTFGLFLGRK 123 (289)
Q Consensus 104 ~iSGah~NPaVTla~~l~g~ 123 (289)
.=|+||+||.+.++..+.++
T Consensus 6 ~Gt~Ghv~P~lala~~L~~r 25 (139)
T PF03033_consen 6 GGTRGHVYPFLALARALRRR 25 (139)
T ss_dssp ESSHHHHHHHHHHHHHHHHT
T ss_pred cCChhHHHHHHHHHHHHhcc
Confidence 34789999999999999865
No 38
>PF04632 FUSC: Fusaric acid resistance protein family; InterPro: IPR006726 This entry represents the p-hydroxybenzoic acid efflux pump subunit AaeB (pHBA efflux pump protein B) whose substrates are p-hydroxybenzoic acid (pHBA), 6-hydroxy-2-naphthoic and 2-hydroxycinnamate. It could function as a metabolic relief valve, allowing to eliminate certain compounds when they accumulate to high levels in the cell []. This family also includes fusaric acid resistance proteins [], which are likely to be membrane transporter proteins, and uncharacterised transporter YdhK.; GO: 0006810 transport, 0005886 plasma membrane
Probab=41.14 E-value=3.8e+02 Score=26.80 Aligned_cols=54 Identities=19% Similarity=0.239 Sum_probs=36.9
Q ss_pred HHhcCccccccC---HHHHHHHHHhcCCchhHHHHHHHhhhhhHHHHHHHHHHHhhh
Q 022966 100 YCTAGISGGHIN---PAVTFGLFLGRKVSLIRALLYMVAQCLGAICGCGFVKAFQKS 153 (289)
Q Consensus 100 ~~~~~iSGah~N---PaVTla~~l~g~~~~~~~~~Yi~aQ~lGa~~g~~l~~~~~~~ 153 (289)
|+.-.=.+|+.- .+|+.+++-....|......++.+.++|+.+|....+.++|.
T Consensus 357 Wi~t~W~~G~~~~~~~~v~~~lfa~~~~P~~~~~~~~~G~l~~~~~a~~~~~~vlP~ 413 (650)
T PF04632_consen 357 WIATGWPSGATAVMMAAVVSSLFATLDNPAPALRLFLIGALLGAVLAFLYLFFVLPH 413 (650)
T ss_pred HHHcCCChhHHHHHHHHHHHHHHcCCcChHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 333333345443 334444444455688999999999999999999998888775
No 39
>PF08370 PDR_assoc: Plant PDR ABC transporter associated; InterPro: IPR013581 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This domain is found on the C terminus of ABC-2 type transporter domains (IPR013525 from INTERPRO). It seems to be associated with the plant pleiotropic drug resistance (PDR) protein family of ABC transporters. Like in yeast, plant PDR ABC transporters may also play a role in the transport of antifungal agents [] (see also IPR010929 from INTERPRO). The PDR family is characterised by a configuration in which the ABC domain is nearer the N terminus of the protein than the transmembrane domain [].
Probab=40.69 E-value=49 Score=22.98 Aligned_cols=37 Identities=22% Similarity=0.655 Sum_probs=21.8
Q ss_pred hhhHHHHHHhCCCCCCCcceehhhhhHHHHHHHH-HHHHHH
Q 022966 234 ARSFGAAVIYNKEKAWDDQWIFWVGPFIGAFVAA-FYHQYI 273 (289)
Q Consensus 234 Ar~lg~~i~~~~~~~~~~~wvy~v~p~lGai~a~-~~~~~~ 273 (289)
..++|-++....+.+.+..| ||++ +|+++|. +++..+
T Consensus 9 ~~tlG~~vL~~rG~~~~~~W-yWIg--vgaL~G~~vlFNil 46 (65)
T PF08370_consen 9 NSTLGVAVLKSRGLFTESYW-YWIG--VGALLGFIVLFNIL 46 (65)
T ss_pred CCcHHHHHHHHcCCCCCCcE-Eeeh--HHHHHHHHHHHHHH
Confidence 47888888755444444444 7765 5666664 334433
No 40
>PF14990 DUF4516: Domain of unknown function (DUF4516)
Probab=36.32 E-value=75 Score=20.60 Aligned_cols=35 Identities=26% Similarity=0.234 Sum_probs=30.5
Q ss_pred cCCchhHHHHHHHhhhhhHHHHHHHHHHHhhhhhh
Q 022966 122 RKVSLIRALLYMVAQCLGAICGCGFVKAFQKSYYN 156 (289)
Q Consensus 122 g~~~~~~~~~Yi~aQ~lGa~~g~~l~~~~~~~~~~ 156 (289)
++.+|.+-+....+-++--++|+-++..+|+++++
T Consensus 3 ~Gv~~~~yl~~~~~s~~sM~aGA~vVH~~ykPdlt 37 (47)
T PF14990_consen 3 AGVSWPSYLKSLVASLLSMLAGASVVHNIYKPDLT 37 (47)
T ss_pred CCCcHHHHHHHHHHHHHHHHhhhHHHHHHhCccCC
Confidence 45789999999999999999999999999988754
No 41
>PRK12446 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; Reviewed
Probab=35.49 E-value=12 Score=34.93 Aligned_cols=22 Identities=32% Similarity=0.539 Sum_probs=18.8
Q ss_pred HhcCccccccCHHHHHHHHHhc
Q 022966 101 CTAGISGGHINPAVTFGLFLGR 122 (289)
Q Consensus 101 ~~~~iSGah~NPaVTla~~l~g 122 (289)
+.+.=+|||+.||+.++-.+..
T Consensus 6 ~~~GGTGGHi~Pala~a~~l~~ 27 (352)
T PRK12446 6 FTGGGSAGHVTPNLAIIPYLKE 27 (352)
T ss_pred EEcCCcHHHHHHHHHHHHHHHh
Confidence 4566789999999999999874
No 42
>COG0730 Predicted permeases [General function prediction only]
Probab=33.80 E-value=3.2e+02 Score=23.80 Aligned_cols=33 Identities=18% Similarity=0.254 Sum_probs=26.3
Q ss_pred HHHhcCCchhHHHHHHHhhhhhHHHHHHHHHHH
Q 022966 118 LFLGRKVSLIRALLYMVAQCLGAICGCGFVKAF 150 (289)
Q Consensus 118 ~~l~g~~~~~~~~~Yi~aQ~lGa~~g~~l~~~~ 150 (289)
.+-.++.+|+....+...=++|+++|+.+...+
T Consensus 65 ~~k~~~v~~~~~~~l~~~~~~G~~lG~~l~~~~ 97 (258)
T COG0730 65 YLKRGNVDWKLALILLLGALIGAFLGALLALLL 97 (258)
T ss_pred HHHcCCccHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 334467799999999999999999997766544
No 43
>PF03842 Silic_transp: Silicon transporter; InterPro: IPR004693 Marine diatoms such as Cylindrotheca fusiformis encode at least six silicon transport protein homologues which exhibit similar size and topology. One characterised member of the family (Sit1) functions in the energy-dependent uptake of either silicic acid [Si(OH)4] or silicate [Si(OH)3O-] by a Na+ symport mechanism. The system is found in marine diatoms, which make their "glass houses" out of silicon.
Probab=29.00 E-value=4.8e+02 Score=25.16 Aligned_cols=111 Identities=11% Similarity=0.110 Sum_probs=68.5
Q ss_pred HHHHHHHHHHHHHhcCccccccCHHHHHHHHHhcCCchhHHHHHHHhhhhhHHHHHHHHHHHhh----hhhhhcCCCccc
Q 022966 89 WAFGGMIFILVYCTAGISGGHINPAVTFGLFLGRKVSLIRALLYMVAQCLGAICGCGFVKAFQK----SYYNRYGGGANE 164 (289)
Q Consensus 89 ~~~g~~v~~~i~~~~~iSGah~NPaVTla~~l~g~~~~~~~~~Yi~aQ~lGa~~g~~l~~~~~~----~~~~~~~~~~~~ 164 (289)
+..|++..+...+.|..+ .+.|-+-..--++...+-.....+-+.-++-|-+=.+.++..+.. +....++.+.+.
T Consensus 139 L~~GlaMil~t~~lGQLt-tQVNAshcMlDyINnyFalFTlyvam~IEfsGvmHssYLIq~i~~~~sGKPI~SNE~Prtg 217 (512)
T PF03842_consen 139 LDIGLAMILFTCVLGQLT-TQVNASHCMLDYINNYFALFTLYVAMAIEFSGVMHSSYLIQNILSALSGKPIESNEPPRTG 217 (512)
T ss_pred hccchHHHHHHHhhcccc-HhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHcCCCcccCCCcchh
Confidence 334555555566666665 677777777777777777777777788888888888877765543 222222222111
Q ss_pred cCCCCcchhhhHHHHHHHHHHHHHHHHhcCCCCCCC
Q 022966 165 LADGYNKGTGLGAEIIGTFVLVYTVFSATDPKRSAR 200 (289)
Q Consensus 165 ~~~~~s~~~~~~~E~~~T~~Lv~~v~~~~~~~~~~~ 200 (289)
...-+-+.|.+++=.+..|.+..++-+....+..-.
T Consensus 218 ~~~~FFWgRvlmSl~ILgF~lAVtl~ALf~G~Ttmw 253 (512)
T PF03842_consen 218 FQFAFFWGRVLMSLAILGFCLAVTLVALFNGKTTMW 253 (512)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCceec
Confidence 112233566777777777777766666666555443
No 44
>COG3301 NrfD Formate-dependent nitrite reductase, membrane component [Inorganic ion transport and metabolism]
Probab=24.46 E-value=5e+02 Score=23.72 Aligned_cols=49 Identities=16% Similarity=0.454 Sum_probs=27.8
Q ss_pred CCCccch---hhhHHHHHHhCCCCCCCcceehhhhhHHHHHHHHHHHHHHhhhhhhh
Q 022966 227 TGTGINP---ARSFGAAVIYNKEKAWDDQWIFWVGPFIGAFVAAFYHQYILRAAAIK 280 (289)
Q Consensus 227 tG~~~NP---Ar~lg~~i~~~~~~~~~~~wvy~v~p~lGai~a~~~~~~~~~~~~~~ 280 (289)
.+.++|| +|.+..++.++ +| .|++|++-..=+++...+.++..+++..+
T Consensus 223 ~l~~~G~~a~~~a~~~al~gg---~~--a~~fwiGV~giGliiplll~~~~~~k~~~ 274 (305)
T COG3301 223 VLLSLGGVAAARALATALAGG---FW--AWVFWIGVLGLGLIIPLLLKFGVNPKVPE 274 (305)
T ss_pred HHHHhCcHHHHHHHHHHHhcc---cH--HHHHHHHHHHHHHHHHHHHhhcccccccc
Confidence 3345555 45667676533 34 77888775544465566666555554433
No 45
>PRK11427 multidrug efflux system protein MdtO; Provisional
Probab=21.78 E-value=9e+02 Score=24.97 Aligned_cols=28 Identities=21% Similarity=0.132 Sum_probs=23.5
Q ss_pred chhHHHHHHHhhhhhHHHHHHHHHHHhh
Q 022966 125 SLIRALLYMVAQCLGAICGCGFVKAFQK 152 (289)
Q Consensus 125 ~~~~~~~Yi~aQ~lGa~~g~~l~~~~~~ 152 (289)
+..|....+++.++|+++|..+...+.+
T Consensus 394 T~sRa~~RiiGTliGallA~ll~v~l~P 421 (683)
T PRK11427 394 SYQKMVLRFGGAFCGAILALLFTLLVMP 421 (683)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 5678888999999999999988877754
No 46
>PF09622 DUF2391: Putative integral membrane protein (DUF2391); InterPro: IPR024464 Members of this protein family are found in archaea and bacteria. Their function is unknown.
Probab=21.49 E-value=2.2e+02 Score=25.61 Aligned_cols=40 Identities=20% Similarity=0.089 Sum_probs=31.9
Q ss_pred HHHHHHhcCC----chhHHHHHHHhhhhhHHHHHHHHHHHhhhh
Q 022966 115 TFGLFLGRKV----SLIRALLYMVAQCLGAICGCGFVKAFQKSY 154 (289)
Q Consensus 115 Tla~~l~g~~----~~~~~~~Yi~aQ~lGa~~g~~l~~~~~~~~ 154 (289)
++-+.+.|++ ++...+-.++-|..=+-+|+.+.+...+++
T Consensus 80 ~~~L~~l~~l~~~~~~~e~lgkiiv~~vP~siGa~la~~~L~~~ 123 (267)
T PF09622_consen 80 AAVLTLLGKLTLDTPPREALGKIIVQSVPASIGAALARSQLGGD 123 (267)
T ss_pred HHHHHHHhhCCCCCCHHHHhHhheeeEecHHHHHHHHHHHcCCC
Confidence 3445566654 688899999999999999999999888754
No 47
>PF09512 ThiW: Thiamine-precursor transporter protein (ThiW); InterPro: IPR012652 Levels of thiamine pyrophosphate (TPP) or thiamine regulate transcription or translation of a number of thiamine biosynthesis, salvage, or transport genes in a wide range of prokaryotes. The mechanism involves direct binding, with no protein involved, to a structural element called THI found in the untranslated upstream region of thiamine metabolism gene operons. This element is called a riboswitch and is seen also for other metabolites such as FMN and glycine. This protein family consists of proteins identified in operons controlled by the THI riboswitch and designated ThiW. The hydrophobic nature of this protein and reconstructed metabolic background suggests that this protein acts in transport of a thiazole precursor of thiamine.
Probab=20.87 E-value=4.3e+02 Score=21.58 Aligned_cols=25 Identities=24% Similarity=0.449 Sum_probs=19.4
Q ss_pred hhHHHHHHHhhhhhHHHHHHHHHHH
Q 022966 126 LIRALLYMVAQCLGAICGCGFVKAF 150 (289)
Q Consensus 126 ~~~~~~Yi~aQ~lGa~~g~~l~~~~ 150 (289)
+...+.+..+-+.|+.+|..+++.+
T Consensus 123 ~~~v~~F~~St~~Ga~ig~~~l~~L 147 (150)
T PF09512_consen 123 FFFVPPFLISTLIGAIIGYILLKAL 147 (150)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 5667777888888888888877765
Done!