Query 022966
Match_columns 289
No_of_seqs 190 out of 1551
Neff 8.0
Searched_HMMs 29240
Date Mon Mar 25 14:06:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022966.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/022966hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3cn5_A Aquaporin; membrane pro 100.0 1.5E-63 5.2E-68 449.1 20.3 279 1-289 24-302 (304)
2 3iyz_A Aquaporin-4; water tran 100.0 6.8E-55 2.3E-59 394.9 25.0 247 17-278 22-273 (340)
3 3gd8_A Aquaporin-4; proton exc 100.0 1.7E-53 5.8E-58 369.8 23.5 222 40-276 2-223 (223)
4 3d9s_A Aquaporin-5, AQP-5; aqu 100.0 5.9E-53 2E-57 374.7 23.2 229 31-278 1-230 (266)
5 2zz9_A Aquaporin-4; water tran 100.0 8E-53 2.7E-57 378.5 21.7 230 33-277 4-233 (301)
6 1j4n_A Aquaporin 1; membrane p 100.0 1.8E-52 6.1E-57 373.1 23.1 234 34-277 3-236 (271)
7 3llq_A Aquaporin Z 2; aquapori 100.0 1.1E-52 3.6E-57 370.0 20.5 223 37-274 25-253 (256)
8 2w2e_A AQY1, aquaporin, aquapo 100.0 4.9E-52 1.7E-56 370.9 24.4 227 39-278 42-268 (279)
9 2o9g_A Aquaporin Z; integral m 100.0 6.4E-52 2.2E-56 362.5 22.0 222 40-276 3-232 (234)
10 2b6o_A Aquaporin-0, lens fiber 100.0 2.9E-51 1E-55 363.7 25.7 225 34-277 2-226 (263)
11 1ldf_A Glycerol uptake facilit 100.0 9.7E-52 3.3E-56 370.6 21.1 229 38-278 4-259 (281)
12 3c02_A Aquaglyceroporin; membr 100.0 1.1E-51 3.7E-56 366.0 18.0 230 39-280 7-248 (258)
13 2f2b_A Aquaporin AQPM; protein 100.0 1E-50 3.5E-55 357.8 23.0 231 40-275 3-245 (246)
14 2b6o_A Aquaporin-0, lens fiber 99.6 6.2E-16 2.1E-20 136.9 8.8 113 170-286 8-120 (263)
15 3gd8_A Aquaporin-4; proton exc 99.6 7.4E-15 2.5E-19 126.9 8.5 116 171-288 3-120 (223)
16 3d9s_A Aquaporin-5, AQP-5; aqu 99.5 8.6E-15 2.9E-19 129.6 8.1 105 170-278 10-114 (266)
17 2zz9_A Aquaporin-4; water tran 99.5 4.8E-14 1.6E-18 126.5 11.1 111 170-282 11-123 (301)
18 2f2b_A Aquaporin AQPM; protein 99.5 4.1E-14 1.4E-18 124.2 10.4 99 40-152 142-245 (246)
19 1j4n_A Aquaporin 1; membrane p 99.5 1.8E-14 6E-19 128.0 7.7 112 171-284 10-128 (271)
20 3llq_A Aquaporin Z 2; aquapori 99.5 2.3E-14 7.9E-19 125.8 7.8 105 169-275 27-132 (256)
21 3iyz_A Aquaporin-4; water tran 99.5 2.2E-14 7.6E-19 129.9 7.4 107 170-278 50-158 (340)
22 3c02_A Aquaglyceroporin; membr 99.5 3.4E-14 1.2E-18 125.4 7.2 107 170-278 8-114 (258)
23 1ldf_A Glycerol uptake facilit 99.5 4.2E-14 1.4E-18 126.3 7.6 106 170-277 6-111 (281)
24 2o9g_A Aquaporin Z; integral m 99.5 4.9E-14 1.7E-18 122.7 6.7 105 171-277 4-109 (234)
25 3cn5_A Aquaporin; membrane pro 99.4 2.1E-13 7E-18 122.7 8.0 106 170-277 59-167 (304)
26 2w2e_A AQY1, aquaporin, aquapo 99.4 1.6E-13 5.6E-18 122.1 7.2 106 170-277 43-155 (279)
27 3kcu_A Probable formate transp 92.6 4.5 0.00015 35.4 14.9 110 84-196 68-186 (285)
28 3kly_A Putative formate transp 88.2 12 0.00043 32.5 15.6 109 84-196 67-185 (280)
29 3tds_E Formate/nitrite transpo 63.3 72 0.0025 27.4 14.9 184 83-279 63-261 (268)
30 4fc4_A Nitrite transporter NIR 46.5 1.4E+02 0.0047 25.5 13.7 108 84-194 58-173 (261)
31 3s2u_A UDP-N-acetylglucosamine 45.0 3.4 0.00012 37.0 -0.9 21 103-123 9-29 (365)
No 1
>3cn5_A Aquaporin; membrane protein, transmembrane, transport, transport protein; 2.05A {Spinacia oleracea} PDB: 3cn6_A 3cll_A 1z98_A 2b5f_A
Probab=100.00 E-value=1.5e-63 Score=449.08 Aligned_cols=279 Identities=80% Similarity=1.319 Sum_probs=210.3
Q ss_pred CCCcHHHHHhhCCCCcccccCCCCCCCCCCCCccccCchHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCC
Q 022966 1 MGKDVEVAEQQGGGGEFSAKDYHDPPPAPLIDFEELGKWSFYRAVIAEFIATLLFLYVTVLTVIGYKSQTDPNLNTDQCG 80 (289)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~r~~~aEflgT~llvf~~~~~~~~~~~~~~~~~~~~~~~ 80 (289)
|.||+|..|+ +..+.||++||++++..+.+|+++++++|++++||+|||+|+|++++++++...+... ..
T Consensus 24 ~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~e~~~~~~~r~~lAEfiGT~lLv~~g~gsv~~~~~~~~~------~~ 93 (304)
T 3cn5_A 24 MSKEVSEEAQ----AHQHGKDYVDPPPAPFFDLGELKLWSFWRAAIAEFIATLLFLYITVATVIGHSKETVV------CG 93 (304)
T ss_dssp -----------------------------------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCST------TC
T ss_pred HHHHhhcccc----ccccCCCccCCCcccccCccccccHHHHHHHHHHHHHHHHHHHHHhHHHeEeccccCC------CC
Confidence 6788766432 3456799999999999999999999999999999999999999999988765433211 23
Q ss_pred CchhHHHHHHHHHHHHHHHHHhcCccccccCHHHHHHHHHhcCCchhHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhcCC
Q 022966 81 GVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLGRKVSLIRALLYMVAQCLGAICGCGFVKAFQKSYYNRYGG 160 (289)
Q Consensus 81 ~~~~~~~~~~~g~~v~~~i~~~~~iSGah~NPaVTla~~l~g~~~~~~~~~Yi~aQ~lGa~~g~~l~~~~~~~~~~~~~~ 160 (289)
..+++.+++++|+++++++|+++++||||+|||||+++++.|+++|++++.||++|++||++|++++|.++++.++..+.
T Consensus 94 ~~g~l~iala~Glav~~~v~~~g~iSGaHlNPAVTla~~l~g~~~~~~~~~YiiAQ~lGAi~Ga~lv~~~~~~~~~~~~~ 173 (304)
T 3cn5_A 94 SVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVELLRALVYMIAQCLGAICGVGLVKAFMKGPYNQFGG 173 (304)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHTTTTCCCCSHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHTTT
T ss_pred CCCceeehhhhhhhhheeeeEeeccCCCccCcHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccC
Confidence 45788999999999999999999999999999999999999999999999999999999999999999999987766665
Q ss_pred CccccCCCCcchhhhHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCcchhHHHHHHHHHHHHHhcCCCCCccchhhhHHHH
Q 022966 161 GANELADGYNKGTGLGAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAA 240 (289)
Q Consensus 161 ~~~~~~~~~s~~~~~~~E~~~T~~Lv~~v~~~~~~~~~~~~~~~~~~~~~~iGl~v~~~~~~~~~~tG~~~NPAr~lg~~ 240 (289)
+.+.+.++.+..++|+.|+++||+|+++++.+.|+++.....+.+.+.|+.||++++++.++++++||+++||||||||+
T Consensus 174 g~~~~~~~~s~~~~f~~E~i~TfiLv~~Il~~~d~~~~~~~~~~~~lapl~IGl~V~~~~l~~g~~TG~amNPAR~~GPa 253 (304)
T 3cn5_A 174 GANSVALGYNKGTALGAEIIGTFVLVYTVFSATDPKRSARDSHVPILAPLPIGFAVFMVHLATIPITGTGINPARSFGAA 253 (304)
T ss_dssp TCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHTEEEEEESTTSCCEEECHHHHHHHHHHHHHHHHHHHSCCCCHHHHHHHH
T ss_pred cccccCCCccHHHHHHHHHHHHHHHHHHHhheecCccCCCCcccccchHHHHHHHHHHHHHhccCCCccccChHHHHHHH
Confidence 66666677889999999999999999999988886654333223458899999999999999999999999999999999
Q ss_pred HHhCCCCCCCcceehhhhhHHHHHHHHHHHHHHhhhhhhhhcccccCCC
Q 022966 241 VIYNKEKAWDDQWIFWVGPFIGAFVAAFYHQYILRAAAIKALGSFRSNA 289 (289)
Q Consensus 241 i~~~~~~~~~~~wvy~v~p~lGai~a~~~~~~~~~~~~~~~~~~~~~~~ 289 (289)
+++++...|+++|+||++|++|+++|+++|++++++++.+..+.||.+|
T Consensus 254 l~~~~~~~w~~~WvywvgPiiGa~laa~~y~~l~~~~~~~~~~~~~~~~ 302 (304)
T 3cn5_A 254 VIFNSNKVWDDQWIFWVGPFIGAAVAAAYHQYVLRAAAIKALGEFRSNP 302 (304)
T ss_dssp HHHCCHHHHHHTTHHHHHHHHHHHHHHHHHHTTSCCCC-----------
T ss_pred HHHccCCCcCceEEEeehHHHHHHHHHHHHHHHhCCCCCCcccccccCC
Confidence 9865455799999999999999999999999999988777776777654
No 2
>3iyz_A Aquaporin-4; water transport, water channel, two-dimensional C membrane protein, baculovirus expression system, glycoprote membrane; 10.00A {Rattus norvegicus}
Probab=100.00 E-value=6.8e-55 Score=394.93 Aligned_cols=247 Identities=38% Similarity=0.660 Sum_probs=206.1
Q ss_pred ccccCCCCCCCCCCC-----CccccCchHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCCCchhHHHHHHH
Q 022966 17 FSAKDYHDPPPAPLI-----DFEELGKWSFYRAVIAEFIATLLFLYVTVLTVIGYKSQTDPNLNTDQCGGVGILGIAWAF 91 (289)
Q Consensus 17 ~~~~~~~~~~~~~~~-----~~~~~~~~~l~r~~~aEflgT~llvf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (289)
-+.++|.+|...|.. ..++..++++||++++||+|||+|+|++++++++...... ....+++.++++|
T Consensus 22 ~~~~~~~~~~~~ps~~~~~~~~~~~~~~~l~r~~lAEflGT~lLV~~G~Gs~a~~~~~~~-------~~~~g~l~Iala~ 94 (340)
T 3iyz_A 22 MGRDLYDDDDKDPSSRSIMVAFKGVWTQAFWKAVTAEFLAMLIFVLLSVGSTINWGGSEN-------PLPVDMVLISLCF 94 (340)
T ss_pred cCCCCCCCCCCCCcchhhhhhhhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCC-------CCCcchHHHHHHH
Confidence 346677766655421 1244556789999999999999999999998875421111 1234678899999
Q ss_pred HHHHHHHHHHhcCccccccCHHHHHHHHHhcCCchhHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhcCCCccccCCCCcc
Q 022966 92 GGMIFILVYCTAGISGGHINPAVTFGLFLGRKVSLIRALLYMVAQCLGAICGCGFVKAFQKSYYNRYGGGANELADGYNK 171 (289)
Q Consensus 92 g~~v~~~i~~~~~iSGah~NPaVTla~~l~g~~~~~~~~~Yi~aQ~lGa~~g~~l~~~~~~~~~~~~~~~~~~~~~~~s~ 171 (289)
|+++++++|+++++||||+|||||+++++.|+++|.+++.||++|++||++|++++|.++++.... ..+.+.+.++.+.
T Consensus 95 GlaV~~~v~~~g~ISGAHlNPAVTlal~l~G~~~~~~~~~YiiAQ~lGA~~GA~lv~~~~~~~~~~-~lg~~~~~~~~s~ 173 (340)
T 3iyz_A 95 GLSIATMVQCFGHISGGHINPAVTVAMVCTRKISIAKSVFYITAQCLGAIIGAGILYLVTPPSVVG-GLGVTTVHGNLTA 173 (340)
T ss_pred HHHHHHheeEeeccCcCeeChHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcchhhcC-ceeeccCCCccCH
Confidence 999999999999999999999999999999999999999999999999999999999998865421 2233445667788
Q ss_pred hhhhHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCcchhHHHHHHHHHHHHHhcCCCCCccchhhhHHHHHHhCCCCCCCc
Q 022966 172 GTGLGAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNKEKAWDD 251 (289)
Q Consensus 172 ~~~~~~E~~~T~~Lv~~v~~~~~~~~~~~~~~~~~~~~~~iGl~v~~~~~~~~~~tG~~~NPAr~lg~~i~~~~~~~~~~ 251 (289)
.++|+.|+++||+|+++++++.|+++... ....|+.||+++.+....++++||++|||||||||+++.+ .|.+
T Consensus 174 ~~~f~~E~i~Tf~Lv~~Ila~~d~~~~~~----~~~~pl~IGl~v~i~~~~g~~~TG~amNPARdlGPal~~~---~w~~ 246 (340)
T 3iyz_A 174 GHGLLVELIITFQLVFTIFASCDDKRTDV----TGSVALAIGFSVAIGHLFAINYTGASMNPARSFGPAVIMG---NWEN 246 (340)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcCccCCc----ccchhhHHHHHHHHHHHhccCCccccccHHHHHHHHHHcc---CCCc
Confidence 99999999999999999999988776432 2467999999998887887899999999999999999854 6999
Q ss_pred ceehhhhhHHHHHHHHHHHHHHhhhhh
Q 022966 252 QWIFWVGPFIGAFVAAFYHQYILRAAA 278 (289)
Q Consensus 252 ~wvy~v~p~lGai~a~~~~~~~~~~~~ 278 (289)
+||||++|++|+++|+++|++++.|++
T Consensus 247 ~WVywvgPiiGailaallY~~l~~p~~ 273 (340)
T 3iyz_A 247 HWIYWVGPIIGAVLAGALYEYVFCPDV 273 (340)
T ss_pred EeehhHHHHHHHHHHHHHHHHHhCCCh
Confidence 999999999999999999999997764
No 3
>3gd8_A Aquaporin-4; proton exclusion, structural genomics protein structure initiative, center for structures of MEMB proteins, CSMP, glycoprotein; HET: BOG; 1.80A {Homo sapiens}
Probab=100.00 E-value=1.7e-53 Score=369.77 Aligned_cols=222 Identities=40% Similarity=0.700 Sum_probs=192.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHhcCccccccCHHHHHHHH
Q 022966 40 SFYRAVIAEFIATLLFLYVTVLTVIGYKSQTDPNLNTDQCGGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLF 119 (289)
Q Consensus 40 ~l~r~~~aEflgT~llvf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~i~~~~~iSGah~NPaVTla~~ 119 (289)
++||++++||+||++|+|++++++++...... ....+++.+++++|+++++.+++++++||||+|||||++++
T Consensus 2 ~~~r~~~aEfiGT~~lv~~g~g~~~~~~~~~~-------~~~~~~~~ia~~~Gl~v~~~v~~~g~iSGaHlNPAVTla~~ 74 (223)
T 3gd8_A 2 AFWKAVTAEFLAMLIFVLLSLGSTINWGGTEK-------PLPVDMVLISLCFGLSIATMVQCFGHISGGHINPAVTVAMV 74 (223)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTCCTTTTTS-------CCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCSHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccCCC-------CCCcchHHHHHHHHHHHHHHHheecccccceEcHHHHHHHH
Confidence 67999999999999999999998875421111 22346788999999999999999999999999999999999
Q ss_pred HhcCCchhHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhcCCCccccCCCCcchhhhHHHHHHHHHHHHHHHHhcCCCCCC
Q 022966 120 LGRKVSLIRALLYMVAQCLGAICGCGFVKAFQKSYYNRYGGGANELADGYNKGTGLGAEIIGTFVLVYTVFSATDPKRSA 199 (289)
Q Consensus 120 l~g~~~~~~~~~Yi~aQ~lGa~~g~~l~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~E~~~T~~Lv~~v~~~~~~~~~~ 199 (289)
+.|+++|++++.|+++|++||++|+.++|.+++++... ..+.+.+.++.+..++++.|+++||+|+++++...|+|+..
T Consensus 75 ~~g~~~~~~~~~Yi~AQ~lGA~~ga~lv~~~~~~~~~~-~lg~~~~~~~~s~~~~~~~E~i~Tf~Lv~~i~~~~~~~~~~ 153 (223)
T 3gd8_A 75 CTRKISIAKSVFYIAAQCLGAIIGAGILYLVTPPSVVG-GLGVTMVHGNLTAGHGLLVELIITFQLVFTIFASCDSKRTD 153 (223)
T ss_dssp HTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHT-TTTCCCCCTTSCHHHHHHHHHHHHHHHHHHHHHHTCTTCSC
T ss_pred HcCCCCHHHHHHHHHHHHHHHHHHHHHHHhhccccccc-ceeeccCCCccCHHHHHHHHHHHHHHHHHHHHHHhccccCC
Confidence 99999999999999999999999999999999876432 22344556677889999999999999999999998877643
Q ss_pred CCCCCCcchhHHHHHHHHHHHHHhcCCCCCccchhhhHHHHHHhCCCCCCCcceehhhhhHHHHHHHHHHHHHHhhh
Q 022966 200 RDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNKEKAWDDQWIFWVGPFIGAFVAAFYHQYILRA 276 (289)
Q Consensus 200 ~~~~~~~~~~~~iGl~v~~~~~~~~~~tG~~~NPAr~lg~~i~~~~~~~~~~~wvy~v~p~lGai~a~~~~~~~~~~ 276 (289)
. ....|+.||+++.+.....++.||++||||||||||++.+ +|+++|+||++|++|+++++++|+++++|
T Consensus 154 ~----~~~~pl~iGl~v~~~~~~g~~~TG~a~NPAR~~GP~l~~~---~w~~~Wvy~vgP~~Ga~la~~~y~~~~~p 223 (223)
T 3gd8_A 154 V----TGSIALAIGFSVAIGHLFAINYTGASMNPARSFGPAVIMG---NWENHWIYWVGPIIGAVLAGGLYEYVFCP 223 (223)
T ss_dssp C----CSCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHT---CCTTTTHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred c----cCCccHHHHHHHHHHHHhccCCccccccHHHHHHHHHHhc---CCCcEEeehhHHHHHHHHHHHHHHHHcCC
Confidence 2 2467999999988777777788999999999999999864 69999999999999999999999998865
No 4
>3d9s_A Aquaporin-5, AQP-5; aquaglyceroporin, membrane protein, water transport, X-RAY diffraction, lipid, phosphatidylserine, PSF, NPA, AR/R, water channel; HET: PS6; 2.00A {Homo sapiens}
Probab=100.00 E-value=5.9e-53 Score=374.71 Aligned_cols=229 Identities=38% Similarity=0.638 Sum_probs=199.0
Q ss_pred CCccccCchHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHhcCcccccc
Q 022966 31 IDFEELGKWSFYRAVIAEFIATLLFLYVTVLTVIGYKSQTDPNLNTDQCGGVGILGIAWAFGGMIFILVYCTAGISGGHI 110 (289)
Q Consensus 31 ~~~~~~~~~~l~r~~~aEflgT~llvf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~i~~~~~iSGah~ 110 (289)
|+.+|+++++++|++++||+|||+|+|+++++++.... ...+++.+++++|+++++.+++++++||||+
T Consensus 1 ~~~~e~~~~~~~r~~laEfiGT~~lv~~g~g~~~~~~~-----------~~~~~l~ial~~Glav~~~i~~~g~iSGaHl 69 (266)
T 3d9s_A 1 MSKKEVCSVAFLKAVFAEFLATLIFVFFGLGSALKWPS-----------ALPTILQIALAFGLAIGTLAQALGPVSGGHI 69 (266)
T ss_dssp -CHHHHTSHHHHHHHHHHHHHHHHHHHHHHHHHSCCSS-----------SCCCHHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_pred CChhhhhChHHHHHHHHHHHHHHHHHHHHHHHHhCCCC-----------CCccHHHHHHHHHHHHHHHHHHHcccCcceE
Confidence 45678889999999999999999999999998752111 1235788999999999999999999999999
Q ss_pred CHHHHHHHHHhcCCchhHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhcCCCccccCCCCcchhhhHHHHHHHHHHHHHHH
Q 022966 111 NPAVTFGLFLGRKVSLIRALLYMVAQCLGAICGCGFVKAFQKSYYNRYGGGANELADGYNKGTGLGAEIIGTFVLVYTVF 190 (289)
Q Consensus 111 NPaVTla~~l~g~~~~~~~~~Yi~aQ~lGa~~g~~l~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~E~~~T~~Lv~~v~ 190 (289)
|||||+++++.|+++|++++.|+++|++||++|+++++.+++++... ..+.+.+.++.+..++|+.|+++||+|+++++
T Consensus 70 NPAVTla~~~~g~~~~~~~~~Yi~AQ~lGA~~ga~l~~~~~~~~~~~-~~g~~~~~~~~s~~~~~~~E~i~Tf~Lv~~il 148 (266)
T 3d9s_A 70 NPAITLALLVGNQISLLRAFFYVAAQLVGAIAGAGILYGVAPLNARG-NLAVNALNNNTTQGQAMVVELILTFQLALCIF 148 (266)
T ss_dssp CHHHHHHHHHTSSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHT-TTTCCCCCTTSCHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHccccccC-ceeeccCCccccHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999875422 23344455677889999999999999999999
Q ss_pred HhcCCCCCCCCCCCCcchhHHHHHHHHHHHHHhcCCCCCccchhhhHHHHHHhCCCCCCCc-ceehhhhhHHHHHHHHHH
Q 022966 191 SATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNKEKAWDD-QWIFWVGPFIGAFVAAFY 269 (289)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~iGl~v~~~~~~~~~~tG~~~NPAr~lg~~i~~~~~~~~~~-~wvy~v~p~lGai~a~~~ 269 (289)
++.|+++... ..+.|+.||+++.+..+.++++||+++||||||||+++.+ .|.+ +|+||++|++|+++|+++
T Consensus 149 ~~~d~~~~~~----~~~~pl~IGl~v~~~~~~~g~~TG~a~NPAR~~GPal~~~---~~~~~~Wvy~vgP~~Ga~la~~~ 221 (266)
T 3d9s_A 149 ASTDSRRTSP----VGSPALSIGLSVTLGHLVGIYFTGCSMNPARSFGPAVVMN---RFSPAHWVFWVGPIVGAVLAAIL 221 (266)
T ss_dssp HHHCTTCCSC----CCCHHHHHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHT---CCCTTHHHHHHHHHHHHHHHHHH
T ss_pred HHhcccCCCc----cchHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHcC---CcccCEeeeehHHHHHHHHHHHH
Confidence 9888765432 3478999999999999999999999999999999999864 6888 999999999999999999
Q ss_pred HHHHhhhhh
Q 022966 270 HQYILRAAA 278 (289)
Q Consensus 270 ~~~~~~~~~ 278 (289)
|++++.|++
T Consensus 222 y~~l~~~~~ 230 (266)
T 3d9s_A 222 YFYLLFPNS 230 (266)
T ss_dssp HHHTTSCCS
T ss_pred HHHHhCCCc
Confidence 999987653
No 5
>2zz9_A Aquaporin-4; water transport, water channel, two-dimensional crystal, electron diffraction, electron microscopy, membrane protein; HET: PEE; 2.80A {Rattus norvegicus} PDB: 2d57_A
Probab=100.00 E-value=8e-53 Score=378.46 Aligned_cols=230 Identities=40% Similarity=0.689 Sum_probs=194.7
Q ss_pred ccccCchHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHhcCccccccCH
Q 022966 33 FEELGKWSFYRAVIAEFIATLLFLYVTVLTVIGYKSQTDPNLNTDQCGGVGILGIAWAFGGMIFILVYCTAGISGGHINP 112 (289)
Q Consensus 33 ~~~~~~~~l~r~~~aEflgT~llvf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~i~~~~~iSGah~NP 112 (289)
.+|..+.++||++++||+|||+|+|++++++++..... .....+++.+++++|+++++++++++++||||+||
T Consensus 4 ~~~~~~~~~~r~~lAEflGT~lLv~~g~Gs~~~~~~~~-------~~~~~~~l~iala~Glav~~~v~~~g~iSGaHlNP 76 (301)
T 2zz9_A 4 FKGVWTQAFWKAVTAEFLAMLIFVLLSVGSTINWGGSE-------NPLPVDMVLISLCFGLSIATMVQCFGHISGGHINP 76 (301)
T ss_dssp ----CCHHHHHHHHHHHHHHHHHHHHHHTTSCCTTCC--------CCCCCCHHHHHHHHHHHHHHHHHHHGGGTCCCCSH
T ss_pred ccccccHHHHHHHHHHHHHHHHHHHHHHHHHhccccCC-------CCCCcchHHHHHHHHHHHHHhhheeccCCcceeCh
Confidence 45667889999999999999999999998776433211 12234578899999999999999999999999999
Q ss_pred HHHHHHHHhcCCchhHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhcCCCccccCCCCcchhhhHHHHHHHHHHHHHHHHh
Q 022966 113 AVTFGLFLGRKVSLIRALLYMVAQCLGAICGCGFVKAFQKSYYNRYGGGANELADGYNKGTGLGAEIIGTFVLVYTVFSA 192 (289)
Q Consensus 113 aVTla~~l~g~~~~~~~~~Yi~aQ~lGa~~g~~l~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~E~~~T~~Lv~~v~~~ 192 (289)
|||+++++.|+++|++++.||++|++||++|++++|.++++.... ..+.+.+.++.+..++|+.|+++||+|+++++++
T Consensus 77 AVTla~~~~g~~~~~~~~~YiiAQ~lGAi~Ga~lv~~~~~~~~~~-~~g~~~~~~~~s~~~~f~~E~i~Tf~Lv~~Il~~ 155 (301)
T 2zz9_A 77 AVTVAMVCTRKISIAKSVFYITAQCLGAIIGAGILYLVTPPSVVG-GLGVTTVHGNLTAGHGLLVELIITFQLVFTIFAS 155 (301)
T ss_dssp HHHHHHHHTSSSCTTTTHHHHHHHHHHHHHHHHHHHTTSCSCGGG-TSSCCCCCSSCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHhccccccC-ceeeecCCcccchHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999875432 2334455677888999999999999999999998
Q ss_pred cCCCCCCCCCCCCcchhHHHHHHHHHHHHHhcCCCCCccchhhhHHHHHHhCCCCCCCcceehhhhhHHHHHHHHHHHHH
Q 022966 193 TDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNKEKAWDDQWIFWVGPFIGAFVAAFYHQY 272 (289)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~iGl~v~~~~~~~~~~tG~~~NPAr~lg~~i~~~~~~~~~~~wvy~v~p~lGai~a~~~~~~ 272 (289)
.|+++... ..+.|+.||+++.+..+.++++||+++||||||||+++.+ .|.++|+||++|++|+++|+++|++
T Consensus 156 ~d~~~~~~----~~~~pl~IGl~v~i~~~~g~~~TG~a~NPAR~~GPal~~~---~w~~~WVy~vgPiiGailaa~ly~~ 228 (301)
T 2zz9_A 156 CDDKRTDV----TGSVALAIGFSVAIGHLFAINYTGASMNPARSFGPAVIMG---NWENHWIYWVGPIIGAVLAGALYEY 228 (301)
T ss_dssp SCSSSSCC----SSCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHC---CCTTTTHHHHHHHHHHHHHHHHHHT
T ss_pred cCCCCCCc----cchHhHHHHHHHHHHHHHhcCCcccccCcHHHHHHHHHhC---CCcceeeeeeHHHHHHHHHHHHHHH
Confidence 88765432 3478999999998888888889999999999999999864 6999999999999999999999999
Q ss_pred Hhhhh
Q 022966 273 ILRAA 277 (289)
Q Consensus 273 ~~~~~ 277 (289)
++.++
T Consensus 229 l~~~~ 233 (301)
T 2zz9_A 229 VFCPD 233 (301)
T ss_dssp TTC--
T ss_pred HhCCc
Confidence 98654
No 6
>1j4n_A Aquaporin 1; membrane protein, channel protein, transmembrane helices; HET: BNG; 2.20A {Bos taurus} SCOP: f.19.1.1 PDB: 1h6i_A 1fqy_A 1ih5_A
Probab=100.00 E-value=1.8e-52 Score=373.10 Aligned_cols=234 Identities=43% Similarity=0.738 Sum_probs=196.4
Q ss_pred cccCchHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHhcCccccccCHH
Q 022966 34 EELGKWSFYRAVIAEFIATLLFLYVTVLTVIGYKSQTDPNLNTDQCGGVGILGIAWAFGGMIFILVYCTAGISGGHINPA 113 (289)
Q Consensus 34 ~~~~~~~l~r~~~aEflgT~llvf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~i~~~~~iSGah~NPa 113 (289)
+|+++++++|++++||+||++|+|++++++++.......+ .+.....+++.+++++|+++++.+++++++||||+|||
T Consensus 3 ~e~~~~~~~r~~~aEflGT~llv~~g~g~~~~~~~~~~~~--~~~g~~~~~~~ial~~Gl~v~~~i~~~g~iSGaHlNPA 80 (271)
T 1j4n_A 3 SEFKKKLFWRAVVAEFLAMILFIFISIGSALGFHYPIKSN--QTTGAVQDNVKVSLAFGLSIATLAQSVGHISGAHLNPA 80 (271)
T ss_dssp STTHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGCCCSSC--CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHH
T ss_pred cccccHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccc--cccCcccchHHHHHHHHHHHHHHHHHHhcCCcceEcHH
Confidence 4667788999999999999999999999887654221100 00112235788999999999999999999999999999
Q ss_pred HHHHHHHhcCCchhHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhcCCCccccCCCCcchhhhHHHHHHHHHHHHHHHHhc
Q 022966 114 VTFGLFLGRKVSLIRALLYMVAQCLGAICGCGFVKAFQKSYYNRYGGGANELADGYNKGTGLGAEIIGTFVLVYTVFSAT 193 (289)
Q Consensus 114 VTla~~l~g~~~~~~~~~Yi~aQ~lGa~~g~~l~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~E~~~T~~Lv~~v~~~~ 193 (289)
||+++++.|+++|++++.||++|++||++|++++|.++++... ...+.+...++.+..++++.|+++||+|++++++..
T Consensus 81 VTla~~~~g~~~~~~~~~Yi~AQ~lGa~~ga~l~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~E~i~T~~Lv~~i~~~~ 159 (271)
T 1j4n_A 81 VTLGLLLSCQISVLRAIMYIIAQCVGAIVATAILSGITSSLPD-NSLGLNALAPGVNSGQGLGIEIIGTLQLVLCVLATT 159 (271)
T ss_dssp HHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHTTTCTT-CCTTCCCCCTTCCTTGGGHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHccCCcc-cccccccCCCccchHHHHHHHHHHHHHHHHHHHhhc
Confidence 9999999999999999999999999999999999999865321 122334455677889999999999999999999988
Q ss_pred CCCCCCCCCCCCcchhHHHHHHHHHHHHHhcCCCCCccchhhhHHHHHHhCCCCCCCcceehhhhhHHHHHHHHHHHHHH
Q 022966 194 DPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNKEKAWDDQWIFWVGPFIGAFVAAFYHQYI 273 (289)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~iGl~v~~~~~~~~~~tG~~~NPAr~lg~~i~~~~~~~~~~~wvy~v~p~lGai~a~~~~~~~ 273 (289)
|+++... ..+.|+.||+++.+..+..+++||+++||||||||+++. ..|.++|+||++|++|+++|+++|+++
T Consensus 160 d~~~~~~----~~~~pl~IGl~v~~~~~~~~~~TG~a~NPAR~~Gpal~~---~~~~~~wv~~vgP~~Ga~la~~~y~~~ 232 (271)
T 1j4n_A 160 DRRRRDL----GGSGPLAIGFSVALGHLLAIDYTGCGINPARSFGSSVIT---HNFQDHWIFWVGPFIGAALAVLIYDFI 232 (271)
T ss_dssp CSSCCCC----CSCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHT---TCCTTTTHHHHHHHHHHHHHHHHHHTT
T ss_pred cccCCCc----cccHHHHHHHHHHHHHHhccCCCccccChHHHHHHHHHh---CCCcceeHHHHHHHHHHHHHHHHHHHH
Confidence 8765432 347899999999888787778999999999999999985 369999999999999999999999999
Q ss_pred hhhh
Q 022966 274 LRAA 277 (289)
Q Consensus 274 ~~~~ 277 (289)
+.++
T Consensus 233 ~~~~ 236 (271)
T 1j4n_A 233 LAPR 236 (271)
T ss_dssp TSCC
T ss_pred hCCC
Confidence 8764
No 7
>3llq_A Aquaporin Z 2; aquaporin tetramer, membrane protein, water channel, structu genomics, PSI-2, protein structure initiative; 2.01A {Agrobacterium tumefaciens str}
Probab=100.00 E-value=1.1e-52 Score=370.00 Aligned_cols=223 Identities=29% Similarity=0.498 Sum_probs=186.6
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHhcCccccccCHHHHH
Q 022966 37 GKWSFYRAVIAEFIATLLFLYVTVLTVIGYKSQTDPNLNTDQCGGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTF 116 (289)
Q Consensus 37 ~~~~l~r~~~aEflgT~llvf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~i~~~~~iSGah~NPaVTl 116 (289)
.+++++|++++||+|||+|+|++++++....... ....+++.++++||+++++.+++++++||||+|||||+
T Consensus 25 ~~~~l~r~~laEflGT~lLv~~G~G~~~~~~~~~--------~~~~~~l~iala~Glav~~~i~~~g~iSGaHlNPAVTl 96 (256)
T 3llq_A 25 QSYVMGRKLLAEFFGTFWLVFGGCGSAVFAAAFP--------ELGIGFTGVALAFGLTVLTMAYAVGGISGGHFNPAVSV 96 (256)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHHHHHHHHTTCT--------TTCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCSHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC--------CCCccHHHHHHHHHHHHHHHHheeeccccceEchHHHH
Confidence 4567899999999999999999999875433211 12346889999999999999999999999999999999
Q ss_pred HHHHhcCCchhHHHHHHHhhhhhHHHHHHHHHHHhhhh--hhhcCCC---c-cccCCCCcchhhhHHHHHHHHHHHHHHH
Q 022966 117 GLFLGRKVSLIRALLYMVAQCLGAICGCGFVKAFQKSY--YNRYGGG---A-NELADGYNKGTGLGAEIIGTFVLVYTVF 190 (289)
Q Consensus 117 a~~l~g~~~~~~~~~Yi~aQ~lGa~~g~~l~~~~~~~~--~~~~~~~---~-~~~~~~~s~~~~~~~E~~~T~~Lv~~v~ 190 (289)
++++.|+++|++++.|+++|++||++|+++++.++++. ++..+.. . .+.+...+..++|+.|+++||+|+++++
T Consensus 97 a~~~~g~~~~~~~~~YiiAQ~lGA~~ga~lv~~~~~~~~~~~~~~~~~~~~~~t~p~~~s~~~~f~~E~i~Tf~Lv~~il 176 (256)
T 3llq_A 97 GLTVAGRFPASSLVPYVIAQVAGAIVAAAALYVIATGKAGIDLGGFASNGYGEHSPGGYSLVSALLIEIILTAFFLIVIL 176 (256)
T ss_dssp HHHHTTSSCGGGHHHHHHHHHHHHHHHHHHHHHHHTTBTTCCCTTTTCCCCGGGSTTCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccccccccccccccCCcccCHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999998642 2110111 1 1123356788999999999999999999
Q ss_pred HhcCCCCCCCCCCCCcchhHHHHHHHHHHHHHhcCCCCCccchhhhHHHHHHhCCCCCCCcceehhhhhHHHHHHHHHHH
Q 022966 191 SATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNKEKAWDDQWIFWVGPFIGAFVAAFYH 270 (289)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~iGl~v~~~~~~~~~~tG~~~NPAr~lg~~i~~~~~~~~~~~wvy~v~p~lGai~a~~~~ 270 (289)
++.|+++. ..+.|+.||+++.++.++.+++||+++|||||||||++.+ +..|+++|+||++|++|+++|+++|
T Consensus 177 ~~~d~~~~------~~~~pl~IGl~v~~i~~~~g~~TG~a~NPAR~lGPal~~g-~~~~~~~WVy~vgPi~Ga~la~~~y 249 (256)
T 3llq_A 177 GSTHGRVP------AGFAPIAIGLALTLIHLISIPVTNTSVNPARSTGQALFVG-GWALQQLWLFWLAPIVGGAAGAVIW 249 (256)
T ss_dssp HHHSTTSC------TTCHHHHHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHC-HHHHHHTTHHHHHHHHHHHHHHHHH
T ss_pred HhcCCCCC------ccchhHHHHHHHHHHHHHhccccccccChHHHHHHHHHcC-CCcccceeeeeeHHHHHHHHHHHHH
Confidence 98886543 3478999999999999999999999999999999999875 3457799999999999999999999
Q ss_pred HHHh
Q 022966 271 QYIL 274 (289)
Q Consensus 271 ~~~~ 274 (289)
+++.
T Consensus 250 ~~l~ 253 (256)
T 3llq_A 250 KLFG 253 (256)
T ss_dssp HHHT
T ss_pred HHhc
Confidence 9874
No 8
>2w2e_A AQY1, aquaporin, aquaporin PIP2-7 7; yeast, gating, membrane protein; HET: BOG; 1.15A {Komagataella pastoris} PDB: 2w1p_A*
Probab=100.00 E-value=4.9e-52 Score=370.90 Aligned_cols=227 Identities=32% Similarity=0.503 Sum_probs=189.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHhcCccccccCHHHHHHH
Q 022966 39 WSFYRAVIAEFIATLLFLYVTVLTVIGYKSQTDPNLNTDQCGGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGL 118 (289)
Q Consensus 39 ~~l~r~~~aEflgT~llvf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~i~~~~~iSGah~NPaVTla~ 118 (289)
++++|++++||+|||+|+|++++++......... .++.....+++.+++++|+++++++++++++||||+|||||+++
T Consensus 42 ~~~~r~~laEfiGT~~Lv~~g~g~~~~~~~~~~~--~~~~~~~~~~l~iala~Glav~~~v~~~g~iSGaHlNPAVTla~ 119 (279)
T 2w2e_A 42 RNHFIAMSGEFVGTFLFLWSAFVIAQIANQAPET--PDGGSNPAQLIMISFGFGFGVMVGVFITYRVSGGNLNPAVTLAL 119 (279)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCC--GGGCCCHHHHHHHHHHHHHHHHHHHHHHTTTTCCCCSHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccc--cccCCCCccHHHHHHHHHHHHHHHHHHHhhcCccccChHHHHHH
Confidence 3678999999999999999998864211111000 00012234678899999999999999999999999999999999
Q ss_pred HHhcCCchhHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhcCCCccccCCCCcchhhhHHHHHHHHHHHHHHHHhcCCCCC
Q 022966 119 FLGRKVSLIRALLYMVAQCLGAICGCGFVKAFQKSYYNRYGGGANELADGYNKGTGLGAEIIGTFVLVYTVFSATDPKRS 198 (289)
Q Consensus 119 ~l~g~~~~~~~~~Yi~aQ~lGa~~g~~l~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~E~~~T~~Lv~~v~~~~~~~~~ 198 (289)
++.|+++|++++.|+++|++||++|++++|.++++... ..+.+.++.+..++|+.|+++||+|+++++...++++.
T Consensus 120 ~~~g~~~~~~~~~YiiAQ~lGA~~ga~lv~~~~~~~~~----~~t~~~~~~s~~~~~~~E~i~Tf~Lv~~Il~~~~~~~~ 195 (279)
T 2w2e_A 120 VLARAIPPFRGILMAFTQIVAGMAAAGAASAMTPGEIA----FANALGGGASRTRGLFLEAFGTAILCLTVLMLAVEKHR 195 (279)
T ss_dssp HHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCSSCC----CSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHTTSCST
T ss_pred HHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHccccce----eeccCCccccHHHHHHHHHHHHHHHHHHHHHHccCCCC
Confidence 99999999999999999999999999999999876531 22334456788899999999999999999988776543
Q ss_pred CCCCCCCcchhHHHHHHHHHHHHHhcCCCCCccchhhhHHHHHHhCCCCCCCcceehhhhhHHHHHHHHHHHHHHhhhhh
Q 022966 199 ARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNKEKAWDDQWIFWVGPFIGAFVAAFYHQYILRAAA 278 (289)
Q Consensus 199 ~~~~~~~~~~~~~iGl~v~~~~~~~~~~tG~~~NPAr~lg~~i~~~~~~~~~~~wvy~v~p~lGai~a~~~~~~~~~~~~ 278 (289)
. ..+.|+.||++++++.++++++||+++||||||||+++.+ ..|.++|+||++|++|+++|+++|++++..+.
T Consensus 196 ~-----~~~~pl~IGl~v~~~~l~~g~~TG~s~NPAR~~GPal~~~--~~~~~~WVy~vgPiiGa~la~~ly~~l~~~~~ 268 (279)
T 2w2e_A 196 A-----TWFAPFVIGIALLIAHLICIYYTGAGLNPARSFGPAVAAR--SFPNYHWIYWLGPILGAFLAYSIWQMWKWLNY 268 (279)
T ss_dssp T-----GGGHHHHHHHHHHHHHHHHHHHHCCCCSHHHHHHHHHHHT--CCCTTTTHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred C-----cCcHHHHHHHHHHHHHHhcccccccccChHHHHHHHHHhc--cchhhhhHHHHHHHHHHHHHHHHHHHHHccCC
Confidence 2 3578999999999999999999999999999999999964 34578999999999999999999999986653
No 9
>2o9g_A Aquaporin Z; integral membrane protein, structural genomics, P protein structure initiative, center for structures of MEMB proteins, CSMP; HET: BOG; 1.90A {Escherichia coli} PDB: 2o9f_A* 2o9d_A* 2o9e_A 1rc2_B* 2abm_A* 3nk5_A* 3nka_A* 3nkc_A*
Probab=100.00 E-value=6.4e-52 Score=362.52 Aligned_cols=222 Identities=28% Similarity=0.526 Sum_probs=188.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHhcCccccccCHHHHHHHH
Q 022966 40 SFYRAVIAEFIATLLFLYVTVLTVIGYKSQTDPNLNTDQCGGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLF 119 (289)
Q Consensus 40 ~l~r~~~aEflgT~llvf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~i~~~~~iSGah~NPaVTla~~ 119 (289)
+++|++++||+||++|+|++++++....... ....+++.+++++|+++++.+++++++||||+|||||++++
T Consensus 3 ~l~r~~~aEf~GT~~lv~~g~g~~~~~~~~~--------~~~~~~l~ia~~~Gl~v~~~i~~~g~iSGaHlNPAVTla~~ 74 (234)
T 2o9g_A 3 HMFRKLAAESFGTFWLVFGGSGSAVLAAGFP--------ELGIGFAGVALAFGLTVLTMAFAVGHISGGHFNPAVTIGLW 74 (234)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHTTTCT--------TTCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCSHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcccCCC--------CCCcChHHHHHHHHHHHHHHHHHhhccCcceeCHHHHHHHH
Confidence 3689999999999999999999875332111 12346888999999999999999999999999999999999
Q ss_pred HhcCCchhHHHHHHHhhhhhHHHHHHHHHHHhhhh--hhhc--C---CCc-cccCCCCcchhhhHHHHHHHHHHHHHHHH
Q 022966 120 LGRKVSLIRALLYMVAQCLGAICGCGFVKAFQKSY--YNRY--G---GGA-NELADGYNKGTGLGAEIIGTFVLVYTVFS 191 (289)
Q Consensus 120 l~g~~~~~~~~~Yi~aQ~lGa~~g~~l~~~~~~~~--~~~~--~---~~~-~~~~~~~s~~~~~~~E~~~T~~Lv~~v~~ 191 (289)
+.|+++|++++.|+++|++||++|+.++|.++++. ++.. + .+. .+.+.+.+..++|+.|+++|++|+++++.
T Consensus 75 ~~g~~~~~~~~~Yi~aQ~lGa~~ga~l~~~~~~~~~~~~~~~~~~~~~~~~~t~p~~~~~~~~~~~E~i~T~~Lv~~i~~ 154 (234)
T 2o9g_A 75 AGGRFPAKEVVGYVIAQVVGGIVAAALLYLIASGKTGFDAAASGFASNGYGEHSPGGYSMLSALVVELVLSAGFLLVIHG 154 (234)
T ss_dssp HTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHTTSTTCCHHHHCTTCCCCGGGSTTCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccccccccceeeecCCCccchHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999998753 2110 0 011 11233567889999999999999999999
Q ss_pred hcCCCCCCCCCCCCcchhHHHHHHHHHHHHHhcCCCCCccchhhhHHHHHHhCCCCCCCcceehhhhhHHHHHHHHHHHH
Q 022966 192 ATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNKEKAWDDQWIFWVGPFIGAFVAAFYHQ 271 (289)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~iGl~v~~~~~~~~~~tG~~~NPAr~lg~~i~~~~~~~~~~~wvy~v~p~lGai~a~~~~~ 271 (289)
..|+++. ..+.|+.||+++.++.++.+++||+++|||||||||++.+ +..|+++|+||++|++|+++++++|+
T Consensus 155 ~~d~~~~------~~~~pl~IGl~v~~~~~~~g~~TG~s~NPAR~lGPal~~g-~~~~~~~Wv~~vgP~~Ga~la~~~y~ 227 (234)
T 2o9g_A 155 ATDKFAP------AGFAPIAIGLACTLIHLISIPVTNTSVNPARSTAVAIFQG-GWALEQLWFFWVVPIVGGIIGGLIYR 227 (234)
T ss_dssp HTSTTSC------TTCHHHHHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHC-SHHHHSHHHHHHHHHHHHHHHHHHHH
T ss_pred hcCCCCc------cchHHHHHHHHHHHHHHHccCCCccccChHHHHHHHHHhC-CCCCceeeeeehHHhHHHHHHHHHHH
Confidence 8875432 3478999999999999999999999999999999999975 44577999999999999999999999
Q ss_pred HHhhh
Q 022966 272 YILRA 276 (289)
Q Consensus 272 ~~~~~ 276 (289)
+++++
T Consensus 228 ~~~~~ 232 (234)
T 2o9g_A 228 TLLEK 232 (234)
T ss_dssp HHTSC
T ss_pred HHcCC
Confidence 98865
No 10
>2b6o_A Aquaporin-0, lens fiber major intrinsic protein; aquaporin-0 junctions, AQP0, lens MIP, lipid-protein interac membrane, lipid bilayer; HET: MC3; 1.90A {Ovis aries} SCOP: f.19.1.1 PDB: 1ymg_A* 2b6p_A 2c32_A 1sor_A 3m9i_A*
Probab=100.00 E-value=2.9e-51 Score=363.75 Aligned_cols=225 Identities=35% Similarity=0.612 Sum_probs=195.2
Q ss_pred cccCchHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHhcCccccccCHH
Q 022966 34 EELGKWSFYRAVIAEFIATLLFLYVTVLTVIGYKSQTDPNLNTDQCGGVGILGIAWAFGGMIFILVYCTAGISGGHINPA 113 (289)
Q Consensus 34 ~~~~~~~l~r~~~aEflgT~llvf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~i~~~~~iSGah~NPa 113 (289)
+|+++.+++|++++||+|||+|+|+++++++.. . ....+++.+++++|+++++.+++++++||||+|||
T Consensus 2 ~e~~~~~~~~~~laEfiGT~~Lv~~g~g~~~~~--~---------~~~~~~l~i~l~~Gl~v~~~i~~~g~iSGahlNPA 70 (263)
T 2b6o_A 2 WELRSASFWRAIFAEFFATLFYVFFGLGASLRW--A---------PGPLHVLQVALAFGLALATLVQAVGHISGAHVNPA 70 (263)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHHHHHHSCC--C---------SSSCHHHHHHHHHHHHHHHHHHHGGGTTCCCCSHH
T ss_pred ccccchHHHHHHHHHHHHHHHHHHHHHHHHhcC--C---------CCCcchHHHHHHHHHHHHHHHHHhhccCcCeeChH
Confidence 466778999999999999999999999887532 1 11235778999999999999999999999999999
Q ss_pred HHHHHHHhcCCchhHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhcCCCccccCCCCcchhhhHHHHHHHHHHHHHHHHhc
Q 022966 114 VTFGLFLGRKVSLIRALLYMVAQCLGAICGCGFVKAFQKSYYNRYGGGANELADGYNKGTGLGAEIIGTFVLVYTVFSAT 193 (289)
Q Consensus 114 VTla~~l~g~~~~~~~~~Yi~aQ~lGa~~g~~l~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~E~~~T~~Lv~~v~~~~ 193 (289)
||+++++.|+++|.+++.|+++|++||++|+.+++.+++++... ..+.+.+.++.+..++|+.|+++||+|+++++.+.
T Consensus 71 VTla~~~~g~~~~~~~~~Yi~AQ~lGa~~ga~l~~~~~~~~~~~-~~~~~~~~~~~s~~~~~~~E~i~Tf~Lv~~il~~~ 149 (263)
T 2b6o_A 71 VTFAFLVGSQMSLLRAICYVVAQLLGAVAGAAVLYSVTPPAVRG-NLALNTLHPGVSVGQATIVEIFLTLQFVLCIFATY 149 (263)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHHHHHSCTTTCS-SCSCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHccccccc-ccccccCCccccHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999875422 22344456777889999999999999999999988
Q ss_pred CCCCCCCCCCCCcchhHHHHHHHHHHHHHhcCCCCCccchhhhHHHHHHhCCCCCCCcceehhhhhHHHHHHHHHHHHHH
Q 022966 194 DPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNKEKAWDDQWIFWVGPFIGAFVAAFYHQYI 273 (289)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~iGl~v~~~~~~~~~~tG~~~NPAr~lg~~i~~~~~~~~~~~wvy~v~p~lGai~a~~~~~~~ 273 (289)
|+++... ..+.|+.||++++++.++++++||+++||||||||+++.+ .|+++|+||++|++|+++|+++|+++
T Consensus 150 d~~~~~~----~~~~pl~IGl~v~~~~~~~g~~TG~a~NPAR~~GPal~~~---~~~~~Wvy~vgP~~Ga~la~~~y~~l 222 (263)
T 2b6o_A 150 DERRNGR----LGSVALAVGFSLTLGHLFGMYYTGAGMNPARSFAPAILTR---NFTNHWVYWVGPVIGAGLGSLLYDFL 222 (263)
T ss_dssp CTTSCSS----CCCHHHHHHHHHHHHHHHHTTTSTTCCCHHHHHHHHHHHT---CCTTCTHHHHHHHHHHHHHHHHHHTT
T ss_pred cccCCCC----cccHHHHHHHHHHHHHHhccCCCcccccHHHHHHHHHHcC---CccceeHHHHHHHHHHHHHHHHHHHH
Confidence 7665432 3478999999999999999999999999999999999854 79999999999999999999999999
Q ss_pred hhhh
Q 022966 274 LRAA 277 (289)
Q Consensus 274 ~~~~ 277 (289)
+.++
T Consensus 223 ~~~~ 226 (263)
T 2b6o_A 223 LFPR 226 (263)
T ss_dssp TSCC
T ss_pred hCCc
Confidence 8765
No 11
>1ldf_A Glycerol uptake facilitator protein; glycerol-conducting membrane channel protein, transport PROT; HET: BOG; 2.10A {Escherichia coli} SCOP: f.19.1.1 PDB: 1fx8_A* 1lda_A* 1ldi_A*
Probab=100.00 E-value=9.7e-52 Score=370.55 Aligned_cols=229 Identities=28% Similarity=0.388 Sum_probs=190.8
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHhcCccccccCHHHHHH
Q 022966 38 KWSFYRAVIAEFIATLLFLYVTVLTVIGYKSQTDPNLNTDQCGGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFG 117 (289)
Q Consensus 38 ~~~l~r~~~aEflgT~llvf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~i~~~~~iSGah~NPaVTla 117 (289)
+.+++|++++||+|||+|+|++++++.+...... ..+.+.+++++|+++++.+++++++||||+|||||++
T Consensus 4 ~~~~~~~~laEflGT~~Lv~~G~g~~~~~~l~~~---------~~g~~~ia~~~Glav~~~i~~~g~iSGaHlNPAVTla 74 (281)
T 1ldf_A 4 TSTLKGQCIAEFLGTGLLIFFGVGCVAALKVAGA---------SFGQWEISVIFGLGVAMAIYLTAGVSGAHLNPAVTIA 74 (281)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCC---------CCCHHHHHHHHHHHHHHHHHHHHHHHCCCCSHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC---------CCchHHHHHHHHHHHHHHhheecccCcCeeChHHHHH
Confidence 3467999999999999999999988765433211 1234569999999999999999999999999999999
Q ss_pred HHHhcCCchhHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhcC-----------------CCccccCCCCcchhhhHHHHH
Q 022966 118 LFLGRKVSLIRALLYMVAQCLGAICGCGFVKAFQKSYYNRYG-----------------GGANELADGYNKGTGLGAEII 180 (289)
Q Consensus 118 ~~l~g~~~~~~~~~Yi~aQ~lGa~~g~~l~~~~~~~~~~~~~-----------------~~~~~~~~~~s~~~~~~~E~~ 180 (289)
+++.|+++|++++.|+++|++||++|++++|.++++++++.+ ...+.+.++.+..++|+.|++
T Consensus 75 ~~~~g~~~~~~~~~Yi~AQ~lGA~~ga~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~f~t~p~~~~s~~~~~~~E~i 154 (281)
T 1ldf_A 75 LWLFACFDKRKVIPFIVSQVAGAFCAAALVYGLYYNLFFDFEQTHHIVRGSVESVDLAGTFSTYPNPHINFVQAFAVEMV 154 (281)
T ss_dssp HHHHSCCCTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCTTSGGGHHHHTTTSCCCCTTCCHHHHHHHHHH
T ss_pred HHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccccccccccccceeeccCCccccHHHHHHHHHH
Confidence 999999999999999999999999999999999987543221 112223456788999999999
Q ss_pred HHHHHHHHHHHhcCCCCCCCCCCCCcchhHHHHHHHHHHHHHhcCCCCCccchhhhHHHHHHhC----CCC------CCC
Q 022966 181 GTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYN----KEK------AWD 250 (289)
Q Consensus 181 ~T~~Lv~~v~~~~~~~~~~~~~~~~~~~~~~iGl~v~~~~~~~~~~tG~~~NPAr~lg~~i~~~----~~~------~~~ 250 (289)
+||+|+++++.+.|+++.... ..+.|+.||+++.++.++.+++||+++|||||||||++.. ++. +|.
T Consensus 155 ~Tf~Lv~~il~~~d~~~~~~~---~~~~pl~IGl~v~~~~~~~g~~TG~a~NPAR~~GPal~~~~~g~g~~~~~~~~~~~ 231 (281)
T 1ldf_A 155 ITAILMGLILALTDDGNGVPR---GPLAPLLIGLLIAVIGASMGPLTGTAMNPARDFGPKVFAWLAGWGNVAFTGGRDIP 231 (281)
T ss_dssp HHHHHHHHHHHHHCTTSSSCC---GGGHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHTTTTTHHHHTTCSSC
T ss_pred HHHHHHHHHHHHhccCCCCcc---cchHHHHHHHHHHHHHHhcccccccccCcHhhHHHHHHHHhcccccccccccCCCc
Confidence 999999999999887664321 3578999999999999999999999999999999999851 111 233
Q ss_pred cceehhhhhHHHHHHHHHHHHHHhhhhh
Q 022966 251 DQWIFWVGPFIGAFVAAFYHQYILRAAA 278 (289)
Q Consensus 251 ~~wvy~v~p~lGai~a~~~~~~~~~~~~ 278 (289)
++||||++|++|+++|+++|+++++++.
T Consensus 232 ~~WVy~vgPi~Ga~la~~~y~~l~~~~~ 259 (281)
T 1ldf_A 232 YFLVPLFGPIVGAIVGAFAYRKLIGRHL 259 (281)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHTGGGC
T ss_pred eeeHHhHHHHHHHHHHHHHHHHHhCccC
Confidence 8999999999999999999999987653
No 12
>3c02_A Aquaglyceroporin; membrane protein, glycerol, water, transport, structural GEN PSI-2, protein structure initiative; HET: BOG; 2.05A {Plasmodium falciparum}
Probab=100.00 E-value=1.1e-51 Score=365.99 Aligned_cols=230 Identities=20% Similarity=0.296 Sum_probs=192.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHhcCccccccCHHHHHHH
Q 022966 39 WSFYRAVIAEFIATLLFLYVTVLTVIGYKSQTDPNLNTDQCGGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGL 118 (289)
Q Consensus 39 ~~l~r~~~aEflgT~llvf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~i~~~~~iSGah~NPaVTla~ 118 (289)
++++|++++||+|||+|+|++++++.+..... ...+++.+++++|+++++.+++++++||||+|||||+++
T Consensus 7 ~~~~~~~~aEflGT~~lv~~G~g~~~~~~~~~---------~~~~~l~ia~~~Glav~~~i~~~g~iSGaHlNPAVTla~ 77 (258)
T 3c02_A 7 KSYVREFIGEFLGTFVLMFLGEGATANFHTTG---------LSGDWYKLCLGWGLAVFFGILVSAKLSGAHLNLAVSIGL 77 (258)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHSS---------STTCHHHHHHHHHHHHHHHHHHHHHHHCCCCSHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcccCC---------CCccHHHHHHHHHHHHHHHHheecccCcCeeChHHHHHH
Confidence 46799999999999999999999876543211 123578899999999999999999999999999999999
Q ss_pred HHhcCCchhHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhcCC----CccccCCCCcchhhhHHHHHHHHHHHHHHHHhcC
Q 022966 119 FLGRKVSLIRALLYMVAQCLGAICGCGFVKAFQKSYYNRYGG----GANELADGYNKGTGLGAEIIGTFVLVYTVFSATD 194 (289)
Q Consensus 119 ~l~g~~~~~~~~~Yi~aQ~lGa~~g~~l~~~~~~~~~~~~~~----~~~~~~~~~s~~~~~~~E~~~T~~Lv~~v~~~~~ 194 (289)
++.|+++|++++.|+++|++||++|++++|.+++++++.... +......+.+..++++.|+++||+|+++++.+.|
T Consensus 78 ~~~g~~~~~~~~~Yi~AQ~lGa~~ga~l~~~~~~~~~~~~~~~~~~~~~~~~~t~p~~~~~~~E~i~Tf~Lv~~i~~~~d 157 (258)
T 3c02_A 78 SSINKFDLKKIPVYFFAQLLGAFVGTSTVYGLYHGFISNSKIPQFAWETSRNPSISLTGAFFNELILTGILLLVILVVVD 157 (258)
T ss_dssp HHTTSSCGGGHHHHHHHHHHHHHHHHHHHHHHTHHHHHTTCSCTTCSSCCCCTTSCHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHcchhhhhccccccccccccCCCCchHHHHHHHHHHHHHHHHHHHHHhC
Confidence 999999999999999999999999999999999987654321 1112223455567999999999999999999888
Q ss_pred CCCCCCCCCCCcch-hHHHHHHHHHHHHHhcCCCCCccchhhhHHHHHHhC---CCCCC----CcceehhhhhHHHHHHH
Q 022966 195 PKRSARDSHVPVLA-PLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYN---KEKAW----DDQWIFWVGPFIGAFVA 266 (289)
Q Consensus 195 ~~~~~~~~~~~~~~-~~~iGl~v~~~~~~~~~~tG~~~NPAr~lg~~i~~~---~~~~~----~~~wvy~v~p~lGai~a 266 (289)
+|+.... ..+. |+.||+++.++.++.+++||+++|||||||||++.+ ++..| .++|+||++|++|++++
T Consensus 158 ~~~~~~~---~~~~~pl~IGl~v~~~~~~~g~~TG~a~NPAR~~GPal~~~~~~g~~~~~~~~~y~Wv~~vgP~~Ga~la 234 (258)
T 3c02_A 158 ENICGKF---HILKLSSVVGLIILCIGITFGGNTGFALNPSRDLGSRFLSLIAYGKDTFTKDNFYFWVPLVAPCVGSVVF 234 (258)
T ss_dssp HHHHCSC---CHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCTHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred cccCCcc---cccHHHHHHHHHHHHHHHhccCccCCCcChHHHHHHHHHHhccccccccccCCceeehHHHHHHHHHHHH
Confidence 7653211 3477 999999999999999999999999999999999862 22344 66999999999999999
Q ss_pred HHHHHHHhhhhhhh
Q 022966 267 AFYHQYILRAAAIK 280 (289)
Q Consensus 267 ~~~~~~~~~~~~~~ 280 (289)
+++|++++.++.++
T Consensus 235 ~~~y~~~~~~~~~~ 248 (258)
T 3c02_A 235 CQFYDKVICPLVDL 248 (258)
T ss_dssp HHHHHHTHHHHHHH
T ss_pred HHHHHHHhcccCCC
Confidence 99999998776543
No 13
>2f2b_A Aquaporin AQPM; protein, integral membrane protein, channel, structural GENO PSI-2, protein structure initiative; 1.68A {Methanothermobacter marburgensis str} PDB: 2evu_A 3ne2_A*
Probab=100.00 E-value=1e-50 Score=357.76 Aligned_cols=231 Identities=30% Similarity=0.406 Sum_probs=190.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcc-CCCCCCC----CCCC---CCCchhHHHHHHHHHHHHHHHHHhcCccccccC
Q 022966 40 SFYRAVIAEFIATLLFLYVTVLTVIGYK-SQTDPNL----NTDQ---CGGVGILGIAWAFGGMIFILVYCTAGISGGHIN 111 (289)
Q Consensus 40 ~l~r~~~aEflgT~llvf~~~~~~~~~~-~~~~~~~----~~~~---~~~~~~~~~~~~~g~~v~~~i~~~~~iSGah~N 111 (289)
+++|++++||+||++|+|++++++++.. ....... +... ....+++.+++++|+++++.+++++++||||+|
T Consensus 3 ~~~~~~~aEfiGT~~lv~~g~g~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~~~ia~~~Gl~v~~~v~~~g~iSGaH~N 82 (246)
T 2f2b_A 3 SLTKRCIAEFIGTFILVFFGAGSAAVTLMIASGGTSPNPFNIGIGLLGGLGDWVAIGLAFGFAIAASIYALGNISGCHIN 82 (246)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCSSTTCCSTTTTTTHHHHHHHHHHHHHHHHHHHHHHTTTTCCCCS
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCccccccccccccccccccchhHHHHHHHHHHHHHhheecccccceeC
Confidence 5789999999999999999999876543 1111000 0000 012346679999999999999999999999999
Q ss_pred HHHHHHHHHhcCCchhHHHHHHHhhhhhHHHHHHHHHHHhhhhhhh-cCCCccccCCCCcchhhhHHHHHHHHHHHHHHH
Q 022966 112 PAVTFGLFLGRKVSLIRALLYMVAQCLGAICGCGFVKAFQKSYYNR-YGGGANELADGYNKGTGLGAEIIGTFVLVYTVF 190 (289)
Q Consensus 112 PaVTla~~l~g~~~~~~~~~Yi~aQ~lGa~~g~~l~~~~~~~~~~~-~~~~~~~~~~~~s~~~~~~~E~~~T~~Lv~~v~ 190 (289)
||||+++++.|+++|+|++.|+++|++||++|+.++|.+++++... ...+.+.+.++.+..++++.|+++|++|+++++
T Consensus 83 PAVTla~~~~g~~~~~~~~~Yi~AQ~lGa~~ga~l~~~~~~~~~~~~~~~~~t~p~~~~~~~~~~~~E~i~Tf~Lv~~i~ 162 (246)
T 2f2b_A 83 PAVTIGLWSVKKFPGREVVPYIIAQLLGAAFGSFIFLQCAGIGAATVGGLGATAPFPGISYWQAMLAEVVGTFLLMITIM 162 (246)
T ss_dssp HHHHHHHHHTTSSCGGGHHHHHHHHHHHHHHHHHHHHHHHCTHHHHTTGGGCCCCCTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHcCccchhcceeeeccCccccchHHHHHHHHHHHHHHHheee
Confidence 9999999999999999999999999999999999999999874221 222233444677889999999999999999999
Q ss_pred HhcCCCCCCCCCCCCcchhHHHHHHHHHHHHHhcCCCCCccchhhhHHHHH--Hh-CCCCCCCcceehhhhhHHHHHHHH
Q 022966 191 SATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAV--IY-NKEKAWDDQWIFWVGPFIGAFVAA 267 (289)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~iGl~v~~~~~~~~~~tG~~~NPAr~lg~~i--~~-~~~~~~~~~wvy~v~p~lGai~a~ 267 (289)
...++++.. ..+.|+.+|+++++.+++.+++||+++||||||+|++ .. +++..|.+.|+||++|++|+++|+
T Consensus 163 ~~~~~~~~~-----~~~~pl~iGl~v~~~~~~~g~~TG~~iNPAr~lgp~l~~~~~g~~~~w~~~~vy~vap~~Ga~laa 237 (246)
T 2f2b_A 163 GIAVDERAP-----KGFAGIIIGLTVAGIITTLGNISGSSLNPARTFGPYLNDMIFAGTDLWNYYSIYVIGPIVGAVLAA 237 (246)
T ss_dssp HHTTSTTSC-----TTCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCGGGTTHHHHHHHHHHHHHH
T ss_pred EEecCCCCC-----CceeeHHHHHHHHHHHhcccccCCCccCHHHHHHHHHHHHHcCCCCCcceEEEeeeHHHHHHHHHH
Confidence 876655432 3478999999999999999999999999999999999 33 446789999999999999999999
Q ss_pred HHHHHHhh
Q 022966 268 FYHQYILR 275 (289)
Q Consensus 268 ~~~~~~~~ 275 (289)
++|+++++
T Consensus 238 ~~y~~l~~ 245 (246)
T 2f2b_A 238 LTYQYLTS 245 (246)
T ss_dssp HHHHHHTC
T ss_pred HHHHHHcC
Confidence 99999875
No 14
>2b6o_A Aquaporin-0, lens fiber major intrinsic protein; aquaporin-0 junctions, AQP0, lens MIP, lipid-protein interac membrane, lipid bilayer; HET: MC3; 1.90A {Ovis aries} SCOP: f.19.1.1 PDB: 1ymg_A* 2b6p_A 2c32_A 1sor_A 3m9i_A*
Probab=99.62 E-value=6.2e-16 Score=136.85 Aligned_cols=113 Identities=19% Similarity=0.145 Sum_probs=91.0
Q ss_pred cchhhhHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCcchhHHHHHHHHHHHHHhcCCCCCccchhhhHHHHHHhCCCCCC
Q 022966 170 NKGTGLGAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNKEKAW 249 (289)
Q Consensus 170 s~~~~~~~E~~~T~~Lv~~v~~~~~~~~~~~~~~~~~~~~~~iGl~v~~~~~~~~~~tG~~~NPAr~lg~~i~~~~~~~~ 249 (289)
+..+.++.|+++|++|+++.+......+.. .......++.+|+++++.+++.+.+||+|+|||++++..+. ++..|
T Consensus 8 ~~~~~~laEfiGT~~Lv~~g~g~~~~~~~~--~~~~l~i~l~~Gl~v~~~i~~~g~iSGahlNPAVTla~~~~--g~~~~ 83 (263)
T 2b6o_A 8 SFWRAIFAEFFATLFYVFFGLGASLRWAPG--PLHVLQVALAFGLALATLVQAVGHISGAHVNPAVTFAFLVG--SQMSL 83 (263)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSCCCSS--SCHHHHHHHHHHHHHHHHHHHGGGTTCCCCSHHHHHHHHHT--TCSCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCC--CcchHHHHHHHHHHHHHHHHHhhccCcCeeChHHHHHHHHh--cCCCH
Confidence 357889999999999999988765432111 11123468899999999999999999999999999999986 45789
Q ss_pred CcceehhhhhHHHHHHHHHHHHHHhhhhhhhhccccc
Q 022966 250 DDQWIFWVGPFIGAFVAAFYHQYILRAAAIKALGSFR 286 (289)
Q Consensus 250 ~~~wvy~v~p~lGai~a~~~~~~~~~~~~~~~~~~~~ 286 (289)
.+.|+||++|++|+++|+.+++.+++++..+.++.+.
T Consensus 84 ~~~~~Yi~AQ~lGa~~ga~l~~~~~~~~~~~~~~~~~ 120 (263)
T 2b6o_A 84 LRAICYVVAQLLGAVAGAAVLYSVTPPAVRGNLALNT 120 (263)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSCTTTCSSCSCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHccccccccccccc
Confidence 9999999999999999999999998765444444443
No 15
>3gd8_A Aquaporin-4; proton exclusion, structural genomics protein structure initiative, center for structures of MEMB proteins, CSMP, glycoprotein; HET: BOG; 1.80A {Homo sapiens}
Probab=99.55 E-value=7.4e-15 Score=126.94 Aligned_cols=116 Identities=16% Similarity=0.162 Sum_probs=90.9
Q ss_pred chhhhHHHHHHHHHHHHHHHHhcCCCCC--CCCCCCCcchhHHHHHHHHHHHHHhcCCCCCccchhhhHHHHHHhCCCCC
Q 022966 171 KGTGLGAEIIGTFVLVYTVFSATDPKRS--ARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNKEKA 248 (289)
Q Consensus 171 ~~~~~~~E~~~T~~Lv~~v~~~~~~~~~--~~~~~~~~~~~~~iGl~v~~~~~~~~~~tG~~~NPAr~lg~~i~~~~~~~ 248 (289)
.+|.++.||++|++|++..+.......+ +.........++.+|+++++.+++.+.+||+|+|||.+++..+. ++.+
T Consensus 3 ~~r~~~aEfiGT~~lv~~g~g~~~~~~~~~~~~~~~~~~ia~~~Gl~v~~~v~~~g~iSGaHlNPAVTla~~~~--g~~~ 80 (223)
T 3gd8_A 3 FWKAVTAEFLAMLIFVLLSLGSTINWGGTEKPLPVDMVLISLCFGLSIATMVQCFGHISGGHINPAVTVAMVCT--RKIS 80 (223)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTCCTTTTTSCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCSHHHHHHHHHT--TSSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCcchHHHHHHHHHHHHHHHheecccccceEcHHHHHHHHHc--CCCC
Confidence 4688999999999999988765432211 11111134568899999999999999999999999999999986 4578
Q ss_pred CCcceehhhhhHHHHHHHHHHHHHHhhhhhhhhcccccCC
Q 022966 249 WDDQWIFWVGPFIGAFVAAFYHQYILRAAAIKALGSFRSN 288 (289)
Q Consensus 249 ~~~~wvy~v~p~lGai~a~~~~~~~~~~~~~~~~~~~~~~ 288 (289)
|.+...|+++|++|+++|+.+.+.+++++....++.+.++
T Consensus 81 ~~~~~~Yi~AQ~lGA~~ga~lv~~~~~~~~~~~lg~~~~~ 120 (223)
T 3gd8_A 81 IAKSVFYIAAQCLGAIIGAGILYLVTPPSVVGGLGVTMVH 120 (223)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHTTTTCCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcccccccceeeccCC
Confidence 9999999999999999999998888876655445544443
No 16
>3d9s_A Aquaporin-5, AQP-5; aquaglyceroporin, membrane protein, water transport, X-RAY diffraction, lipid, phosphatidylserine, PSF, NPA, AR/R, water channel; HET: PS6; 2.00A {Homo sapiens}
Probab=99.54 E-value=8.6e-15 Score=129.59 Aligned_cols=105 Identities=20% Similarity=0.185 Sum_probs=86.9
Q ss_pred cchhhhHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCcchhHHHHHHHHHHHHHhcCCCCCccchhhhHHHHHHhCCCCCC
Q 022966 170 NKGTGLGAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNKEKAW 249 (289)
Q Consensus 170 s~~~~~~~E~~~T~~Lv~~v~~~~~~~~~~~~~~~~~~~~~~iGl~v~~~~~~~~~~tG~~~NPAr~lg~~i~~~~~~~~ 249 (289)
+..+.++.||++|++|++..+.....+.... ......++.+|+++++.+++.+.+||+|+|||++++..+. ++..|
T Consensus 10 ~~~r~~laEfiGT~~lv~~g~g~~~~~~~~~--~~~l~ial~~Glav~~~i~~~g~iSGaHlNPAVTla~~~~--g~~~~ 85 (266)
T 3d9s_A 10 AFLKAVFAEFLATLIFVFFGLGSALKWPSAL--PTILQIALAFGLAIGTLAQALGPVSGGHINPAITLALLVG--NQISL 85 (266)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSCCSSSC--CCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHT--SSSCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCCCC--ccHHHHHHHHHHHHHHHHHHHcccCcceECHHHHHHHHHh--cCCCH
Confidence 3568899999999999998886654322211 1123468899999999999999999999999999999986 45789
Q ss_pred CcceehhhhhHHHHHHHHHHHHHHhhhhh
Q 022966 250 DDQWIFWVGPFIGAFVAAFYHQYILRAAA 278 (289)
Q Consensus 250 ~~~wvy~v~p~lGai~a~~~~~~~~~~~~ 278 (289)
.+.+.|+++|++|+++|+.+.+.+++++.
T Consensus 86 ~~~~~Yi~AQ~lGA~~ga~l~~~~~~~~~ 114 (266)
T 3d9s_A 86 LRAFFYVAAQLVGAIAGAGILYGVAPLNA 114 (266)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSCHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHccccc
Confidence 99999999999999999999998886543
No 17
>2zz9_A Aquaporin-4; water transport, water channel, two-dimensional crystal, electron diffraction, electron microscopy, membrane protein; HET: PEE; 2.80A {Rattus norvegicus} PDB: 2d57_A
Probab=99.52 E-value=4.8e-14 Score=126.51 Aligned_cols=111 Identities=16% Similarity=0.165 Sum_probs=88.4
Q ss_pred cchhhhHHHHHHHHHHHHHHHHhcCCCCCCC--CCCCCcchhHHHHHHHHHHHHHhcCCCCCccchhhhHHHHHHhCCCC
Q 022966 170 NKGTGLGAEIIGTFVLVYTVFSATDPKRSAR--DSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNKEK 247 (289)
Q Consensus 170 s~~~~~~~E~~~T~~Lv~~v~~~~~~~~~~~--~~~~~~~~~~~iGl~v~~~~~~~~~~tG~~~NPAr~lg~~i~~~~~~ 247 (289)
+.++.++.||++|++|+++.+.......... ........++.+|+++++.+++++.+||+|+|||++++..+. ++.
T Consensus 11 ~~~r~~lAEflGT~lLv~~g~Gs~~~~~~~~~~~~~~~l~iala~Glav~~~v~~~g~iSGaHlNPAVTla~~~~--g~~ 88 (301)
T 2zz9_A 11 AFWKAVTAEFLAMLIFVLLSVGSTINWGGSENPLPVDMVLISLCFGLSIATMVQCFGHISGGHINPAVTVAMVCT--RKI 88 (301)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTSCCTTCC-CCCCCCHHHHHHHHHHHHHHHHHHHGGGTCCCCSHHHHHHHHHT--SSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCCCcchHHHHHHHHHHHHHhhheeccCCcceeChHHHHHHHHh--cCC
Confidence 4678999999999999998886443221111 111123468899999999999999999999999999999986 467
Q ss_pred CCCcceehhhhhHHHHHHHHHHHHHHhhhhhhhhc
Q 022966 248 AWDDQWIFWVGPFIGAFVAAFYHQYILRAAAIKAL 282 (289)
Q Consensus 248 ~~~~~wvy~v~p~lGai~a~~~~~~~~~~~~~~~~ 282 (289)
.|.+...|+++|++|+++|+.+.+.+++++.....
T Consensus 89 ~~~~~~~YiiAQ~lGAi~Ga~lv~~~~~~~~~~~~ 123 (301)
T 2zz9_A 89 SIAKSVFYITAQCLGAIIGAGILYLVTPPSVVGGL 123 (301)
T ss_dssp CTTTTHHHHHHHHHHHHHHHHHHHTTSCSCGGGTS
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHhccccccCce
Confidence 89999999999999999999999988876544333
No 18
>2f2b_A Aquaporin AQPM; protein, integral membrane protein, channel, structural GENO PSI-2, protein structure initiative; 1.68A {Methanothermobacter marburgensis str} PDB: 2evu_A 3ne2_A*
Probab=99.52 E-value=4.1e-14 Score=124.17 Aligned_cols=99 Identities=20% Similarity=0.297 Sum_probs=80.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHhcCccccccCHHHHHHHH
Q 022966 40 SFYRAVIAEFIATLLFLYVTVLTVIGYKSQTDPNLNTDQCGGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLF 119 (289)
Q Consensus 40 ~l~r~~~aEflgT~llvf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~i~~~~~iSGah~NPaVTla~~ 119 (289)
+.++.++.|+++|++|++..++.....+.. . ...++.+|+.++..+++.+++||+|+|||+|++..
T Consensus 142 ~~~~~~~~E~i~Tf~Lv~~i~~~~~~~~~~----------~----~~~pl~iGl~v~~~~~~~g~~TG~~iNPAr~lgp~ 207 (246)
T 2f2b_A 142 SYWQAMLAEVVGTFLLMITIMGIAVDERAP----------K----GFAGIIIGLTVAGIITTLGNISGSSLNPARTFGPY 207 (246)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHTTSTTSC----------T----TCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHheeeEEecCCCCC----------C----ceeeHHHHHHHHHHHhcccccCCCccCHHHHHHHH
Confidence 567899999999999999877643211100 0 11578889999999999999999999999999988
Q ss_pred H-----hcCCchhHHHHHHHhhhhhHHHHHHHHHHHhh
Q 022966 120 L-----GRKVSLIRALLYMVAQCLGAICGCGFVKAFQK 152 (289)
Q Consensus 120 l-----~g~~~~~~~~~Yi~aQ~lGa~~g~~l~~~~~~ 152 (289)
+ .++..|.+.++||++|++|+++|+++.+.+++
T Consensus 208 l~~~~~g~~~~w~~~~vy~vap~~Ga~laa~~y~~l~~ 245 (246)
T 2f2b_A 208 LNDMIFAGTDLWNYYSIYVIGPIVGAVLAALTYQYLTS 245 (246)
T ss_dssp HHHHHHHCCCCGGGTTHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHcCCCCCcceEEEeeeHHHHHHHHHHHHHHHHcC
Confidence 8 34668999999999999999999988776643
No 19
>1j4n_A Aquaporin 1; membrane protein, channel protein, transmembrane helices; HET: BNG; 2.20A {Bos taurus} SCOP: f.19.1.1 PDB: 1h6i_A 1fqy_A 1ih5_A
Probab=99.51 E-value=1.8e-14 Score=128.03 Aligned_cols=112 Identities=16% Similarity=0.207 Sum_probs=86.2
Q ss_pred chhhhHHHHHHHHHHHHHHHHhcCC--C---CCCCCC--CCCcchhHHHHHHHHHHHHHhcCCCCCccchhhhHHHHHHh
Q 022966 171 KGTGLGAEIIGTFVLVYTVFSATDP--K---RSARDS--HVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIY 243 (289)
Q Consensus 171 ~~~~~~~E~~~T~~Lv~~v~~~~~~--~---~~~~~~--~~~~~~~~~iGl~v~~~~~~~~~~tG~~~NPAr~lg~~i~~ 243 (289)
.++.++.||++|++|++..+..... . .+.... ......++.+|+++++.+++++.+||+|+|||++++..+.
T Consensus 10 ~~r~~~aEflGT~llv~~g~g~~~~~~~~~~~~~~~g~~~~~~~ial~~Gl~v~~~i~~~g~iSGaHlNPAVTla~~~~- 88 (271)
T 1j4n_A 10 FWRAVVAEFLAMILFIFISIGSALGFHYPIKSNQTTGAVQDNVKVSLAFGLSIATLAQSVGHISGAHLNPAVTLGLLLS- 88 (271)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHGGGCCCSSCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHT-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccCcccchHHHHHHHHHHHHHHHHHHhcCCcceEcHHHHHHHHHc-
Confidence 5688999999999999977643211 0 011111 1123568899999999999999999999999999999986
Q ss_pred CCCCCCCcceehhhhhHHHHHHHHHHHHHHhhhhhhhhccc
Q 022966 244 NKEKAWDDQWIFWVGPFIGAFVAAFYHQYILRAAAIKALGS 284 (289)
Q Consensus 244 ~~~~~~~~~wvy~v~p~lGai~a~~~~~~~~~~~~~~~~~~ 284 (289)
++..|.+...|+++|++|+++|+.+.+.++.+......+.
T Consensus 89 -g~~~~~~~~~Yi~AQ~lGa~~ga~l~~~~~~~~~~~~~g~ 128 (271)
T 1j4n_A 89 -CQISVLRAIMYIIAQCVGAIVATAILSGITSSLPDNSLGL 128 (271)
T ss_dssp -TSSCHHHHHHHHHHHHHHHHHHHHHHHHHTTTCTTCCTTC
T ss_pred -CCCCHHHHHHHHHHHHHHHHHHHHHHHHHccCCccccccc
Confidence 4578999999999999999999999888876544333333
No 20
>3llq_A Aquaporin Z 2; aquaporin tetramer, membrane protein, water channel, structu genomics, PSI-2, protein structure initiative; 2.01A {Agrobacterium tumefaciens str}
Probab=99.51 E-value=2.3e-14 Score=125.84 Aligned_cols=105 Identities=27% Similarity=0.214 Sum_probs=83.5
Q ss_pred CcchhhhHHHHHHHHHHHHHHHHhcCC-CCCCCCCCCCcchhHHHHHHHHHHHHHhcCCCCCccchhhhHHHHHHhCCCC
Q 022966 169 YNKGTGLGAEIIGTFVLVYTVFSATDP-KRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNKEK 247 (289)
Q Consensus 169 ~s~~~~~~~E~~~T~~Lv~~v~~~~~~-~~~~~~~~~~~~~~~~iGl~v~~~~~~~~~~tG~~~NPAr~lg~~i~~~~~~ 247 (289)
.+..+.++.|+++|++|++..+..... ...+.........++.+|+++++.+++.+.+||+++|||++++..+. ++.
T Consensus 27 ~~l~r~~laEflGT~lLv~~G~G~~~~~~~~~~~~~~~l~iala~Glav~~~i~~~g~iSGaHlNPAVTla~~~~--g~~ 104 (256)
T 3llq_A 27 YVMGRKLLAEFFGTFWLVFGGCGSAVFAAAFPELGIGFTGVALAFGLTVLTMAYAVGGISGGHFNPAVSVGLTVA--GRF 104 (256)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTTCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCSHHHHHHHHHT--TSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCccHHHHHHHHHHHHHHHHheeeccccceEchHHHHHHHHh--cCC
Confidence 356889999999999999987754221 11111111123467899999999999999999999999999999986 467
Q ss_pred CCCcceehhhhhHHHHHHHHHHHHHHhh
Q 022966 248 AWDDQWIFWVGPFIGAFVAAFYHQYILR 275 (289)
Q Consensus 248 ~~~~~wvy~v~p~lGai~a~~~~~~~~~ 275 (289)
.|.+.+.|+++|++|+++|+.+.+.+++
T Consensus 105 ~~~~~~~YiiAQ~lGA~~ga~lv~~~~~ 132 (256)
T 3llq_A 105 PASSLVPYVIAQVAGAIVAAAALYVIAT 132 (256)
T ss_dssp CGGGHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 8999999999999999999999888774
No 21
>3iyz_A Aquaporin-4; water transport, water channel, two-dimensional C membrane protein, baculovirus expression system, glycoprote membrane; 10.00A {Rattus norvegicus}
Probab=99.50 E-value=2.2e-14 Score=129.92 Aligned_cols=107 Identities=16% Similarity=0.142 Sum_probs=85.8
Q ss_pred cchhhhHHHHHHHHHHHHHHHHhcCCCC--CCCCCCCCcchhHHHHHHHHHHHHHhcCCCCCccchhhhHHHHHHhCCCC
Q 022966 170 NKGTGLGAEIIGTFVLVYTVFSATDPKR--SARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNKEK 247 (289)
Q Consensus 170 s~~~~~~~E~~~T~~Lv~~v~~~~~~~~--~~~~~~~~~~~~~~iGl~v~~~~~~~~~~tG~~~NPAr~lg~~i~~~~~~ 247 (289)
+.++.++.||++|++|++..+....... ...........++.+|+++++.+++++.+||+|+|||++++..+. ++.
T Consensus 50 ~l~r~~lAEflGT~lLV~~G~Gs~a~~~~~~~~~~~g~l~Iala~GlaV~~~v~~~g~ISGAHlNPAVTlal~l~--G~~ 127 (340)
T 3iyz_A 50 AFWKAVTAEFLAMLIFVLLSVGSTINWGGSENPLPVDMVLISLCFGLSIATMVQCFGHISGGHINPAVTVAMVCT--RKI 127 (340)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCcchHHHHHHHHHHHHHheeEeeccCcCeeChHHHHHHHHc--CCC
Confidence 3578899999999999998775433211 111111234568899999999999999999999999999999986 467
Q ss_pred CCCcceehhhhhHHHHHHHHHHHHHHhhhhh
Q 022966 248 AWDDQWIFWVGPFIGAFVAAFYHQYILRAAA 278 (289)
Q Consensus 248 ~~~~~wvy~v~p~lGai~a~~~~~~~~~~~~ 278 (289)
.|.+...|+++|++|+++|+.+.+.+++++.
T Consensus 128 ~~~~~~~YiiAQ~lGA~~GA~lv~~~~~~~~ 158 (340)
T 3iyz_A 128 SIAKSVFYITAQCLGAIIGAGILYLVTPPSV 158 (340)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHhcchhh
Confidence 8999999999999999999998888876554
No 22
>3c02_A Aquaglyceroporin; membrane protein, glycerol, water, transport, structural GEN PSI-2, protein structure initiative; HET: BOG; 2.05A {Plasmodium falciparum}
Probab=99.48 E-value=3.4e-14 Score=125.45 Aligned_cols=107 Identities=23% Similarity=0.229 Sum_probs=84.7
Q ss_pred cchhhhHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCcchhHHHHHHHHHHHHHhcCCCCCccchhhhHHHHHHhCCCCCC
Q 022966 170 NKGTGLGAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNKEKAW 249 (289)
Q Consensus 170 s~~~~~~~E~~~T~~Lv~~v~~~~~~~~~~~~~~~~~~~~~~iGl~v~~~~~~~~~~tG~~~NPAr~lg~~i~~~~~~~~ 249 (289)
+..+.++.||++|++|++..+...........+......++.+|+++++.+++.+.+||+|+|||++++..+. ++..|
T Consensus 8 ~~~~~~~aEflGT~~lv~~G~g~~~~~~~~~~~~~~l~ia~~~Glav~~~i~~~g~iSGaHlNPAVTla~~~~--g~~~~ 85 (258)
T 3c02_A 8 SYVREFIGEFLGTFVLMFLGEGATANFHTTGLSGDWYKLCLGWGLAVFFGILVSAKLSGAHLNLAVSIGLSSI--NKFDL 85 (258)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSTTCHHHHHHHHHHHHHHHHHHHHHHHCCCCSHHHHHHHHHT--TSSCG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCccHHHHHHHHHHHHHHHHheecccCcCeeChHHHHHHHHh--CCCcH
Confidence 4578899999999999997664321100000011133468889999999999999999999999999999986 46789
Q ss_pred CcceehhhhhHHHHHHHHHHHHHHhhhhh
Q 022966 250 DDQWIFWVGPFIGAFVAAFYHQYILRAAA 278 (289)
Q Consensus 250 ~~~wvy~v~p~lGai~a~~~~~~~~~~~~ 278 (289)
.+...|+++|++|+++|+.+.+.+++++.
T Consensus 86 ~~~~~Yi~AQ~lGa~~ga~l~~~~~~~~~ 114 (258)
T 3c02_A 86 KKIPVYFFAQLLGAFVGTSTVYGLYHGFI 114 (258)
T ss_dssp GGHHHHHHHHHHHHHHHHHHHHHHTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcchhh
Confidence 99999999999999999999998887653
No 23
>1ldf_A Glycerol uptake facilitator protein; glycerol-conducting membrane channel protein, transport PROT; HET: BOG; 2.10A {Escherichia coli} SCOP: f.19.1.1 PDB: 1fx8_A* 1lda_A* 1ldi_A*
Probab=99.48 E-value=4.2e-14 Score=126.34 Aligned_cols=106 Identities=21% Similarity=0.145 Sum_probs=84.0
Q ss_pred cchhhhHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCcchhHHHHHHHHHHHHHhcCCCCCccchhhhHHHHHHhCCCCCC
Q 022966 170 NKGTGLGAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNKEKAW 249 (289)
Q Consensus 170 s~~~~~~~E~~~T~~Lv~~v~~~~~~~~~~~~~~~~~~~~~~iGl~v~~~~~~~~~~tG~~~NPAr~lg~~i~~~~~~~~ 249 (289)
+..+.++.||++|++|++..+..................++.+|+++++.+++.+.+||+|+|||++++..+. ++..|
T Consensus 6 ~~~~~~laEflGT~~Lv~~G~g~~~~~~l~~~~~g~~~ia~~~Glav~~~i~~~g~iSGaHlNPAVTla~~~~--g~~~~ 83 (281)
T 1ldf_A 6 TLKGQCIAEFLGTGLLIFFGVGCVAALKVAGASFGQWEISVIFGLGVAMAIYLTAGVSGAHLNPAVTIALWLF--ACFDK 83 (281)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCSHHHHHHHHHH--SCCCT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHhheecccCcCeeChHHHHHHHHc--CCCCH
Confidence 4678899999999999997664321100000011123468899999999999999999999999999999987 46789
Q ss_pred CcceehhhhhHHHHHHHHHHHHHHhhhh
Q 022966 250 DDQWIFWVGPFIGAFVAAFYHQYILRAA 277 (289)
Q Consensus 250 ~~~wvy~v~p~lGai~a~~~~~~~~~~~ 277 (289)
.+...|+++|++|+++|+.+.+.+++++
T Consensus 84 ~~~~~Yi~AQ~lGA~~ga~l~~~~~~~~ 111 (281)
T 1ldf_A 84 RKVIPFIVSQVAGAFCAAALVYGLYYNL 111 (281)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 9999999999999999999988888664
No 24
>2o9g_A Aquaporin Z; integral membrane protein, structural genomics, P protein structure initiative, center for structures of MEMB proteins, CSMP; HET: BOG; 1.90A {Escherichia coli} PDB: 2o9f_A* 2o9d_A* 2o9e_A 1rc2_B* 2abm_A* 3nk5_A* 3nka_A* 3nkc_A*
Probab=99.47 E-value=4.9e-14 Score=122.71 Aligned_cols=105 Identities=22% Similarity=0.155 Sum_probs=83.9
Q ss_pred chhhhHHHHHHHHHHHHHHHHhcCCCC-CCCCCCCCcchhHHHHHHHHHHHHHhcCCCCCccchhhhHHHHHHhCCCCCC
Q 022966 171 KGTGLGAEIIGTFVLVYTVFSATDPKR-SARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNKEKAW 249 (289)
Q Consensus 171 ~~~~~~~E~~~T~~Lv~~v~~~~~~~~-~~~~~~~~~~~~~~iGl~v~~~~~~~~~~tG~~~NPAr~lg~~i~~~~~~~~ 249 (289)
..+.++.||++|++|++..+.....++ .+.........++.+|+++++.+++.+.+||+|+|||++++..+. ++.+|
T Consensus 4 l~r~~~aEf~GT~~lv~~g~g~~~~~~~~~~~~~~~l~ia~~~Gl~v~~~i~~~g~iSGaHlNPAVTla~~~~--g~~~~ 81 (234)
T 2o9g_A 4 MFRKLAAESFGTFWLVFGGSGSAVLAAGFPELGIGFAGVALAFGLTVLTMAFAVGHISGGHFNPAVTIGLWAG--GRFPA 81 (234)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTTCTTTCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCSHHHHHHHHHT--TSSCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCcChHHHHHHHHHHHHHHHHHhhccCcceeCHHHHHHHHHh--CCCCH
Confidence 467899999999999998775332111 111111123468899999999999999999999999999999986 46789
Q ss_pred CcceehhhhhHHHHHHHHHHHHHHhhhh
Q 022966 250 DDQWIFWVGPFIGAFVAAFYHQYILRAA 277 (289)
Q Consensus 250 ~~~wvy~v~p~lGai~a~~~~~~~~~~~ 277 (289)
.+...|+++|++|+++|+.+.+.++++.
T Consensus 82 ~~~~~Yi~aQ~lGa~~ga~l~~~~~~~~ 109 (234)
T 2o9g_A 82 KEVVGYVIAQVVGGIVAAALLYLIASGK 109 (234)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 9999999999999999999988887643
No 25
>3cn5_A Aquaporin; membrane protein, transmembrane, transport, transport protein; 2.05A {Spinacia oleracea} PDB: 3cn6_A 3cll_A 1z98_A 2b5f_A
Probab=99.43 E-value=2.1e-13 Score=122.65 Aligned_cols=106 Identities=18% Similarity=0.232 Sum_probs=84.7
Q ss_pred cchhhhHHHHHHHHHHHHHHHHhcCC---CCCCCCCCCCcchhHHHHHHHHHHHHHhcCCCCCccchhhhHHHHHHhCCC
Q 022966 170 NKGTGLGAEIIGTFVLVYTVFSATDP---KRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNKE 246 (289)
Q Consensus 170 s~~~~~~~E~~~T~~Lv~~v~~~~~~---~~~~~~~~~~~~~~~~iGl~v~~~~~~~~~~tG~~~NPAr~lg~~i~~~~~ 246 (289)
+..+.++.||++|++|+++.+..... .............++.+|+++++.+++++.+||+|+|||++++..+. ++
T Consensus 59 ~~~r~~lAEfiGT~lLv~~g~gsv~~~~~~~~~~~~~g~l~iala~Glav~~~v~~~g~iSGaHlNPAVTla~~l~--g~ 136 (304)
T 3cn5_A 59 SFWRAAIAEFIATLLFLYITVATVIGHSKETVVCGSVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLA--RK 136 (304)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCSTTCSCHHHHHHHHHHHHHHHHHHHHTTTTCCCCSHHHHHHHHHT--TS
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHeEeccccCCCCCCCceeehhhhhhhhheeeeEeeccCCCccCcHHHHHHHHh--CC
Confidence 45688999999999999987643211 11111111123467899999999999999999999999999999986 45
Q ss_pred CCCCcceehhhhhHHHHHHHHHHHHHHhhhh
Q 022966 247 KAWDDQWIFWVGPFIGAFVAAFYHQYILRAA 277 (289)
Q Consensus 247 ~~~~~~wvy~v~p~lGai~a~~~~~~~~~~~ 277 (289)
..|.+...|+++|++|+++|+.+.+.+++++
T Consensus 137 ~~~~~~~~YiiAQ~lGAi~Ga~lv~~~~~~~ 167 (304)
T 3cn5_A 137 VELLRALVYMIAQCLGAICGVGLVKAFMKGP 167 (304)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHHHCHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 7899999999999999999999999888765
No 26
>2w2e_A AQY1, aquaporin, aquaporin PIP2-7 7; yeast, gating, membrane protein; HET: BOG; 1.15A {Komagataella pastoris} PDB: 2w1p_A*
Probab=99.42 E-value=1.6e-13 Score=122.12 Aligned_cols=106 Identities=15% Similarity=0.274 Sum_probs=82.8
Q ss_pred cchhhhHHHHHHHHHHHHHHHHh---cCCCC--C--CCCCCCCcchhHHHHHHHHHHHHHhcCCCCCccchhhhHHHHHH
Q 022966 170 NKGTGLGAEIIGTFVLVYTVFSA---TDPKR--S--ARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVI 242 (289)
Q Consensus 170 s~~~~~~~E~~~T~~Lv~~v~~~---~~~~~--~--~~~~~~~~~~~~~iGl~v~~~~~~~~~~tG~~~NPAr~lg~~i~ 242 (289)
+..+.++.||++|++|++..+.. ..... + ..........++.+|+++++.+++++.+||+|+|||++++..+.
T Consensus 43 ~~~r~~laEfiGT~~Lv~~g~g~~~~~~~~~~~~~~~~~~~~~l~iala~Glav~~~v~~~g~iSGaHlNPAVTla~~~~ 122 (279)
T 2w2e_A 43 NHFIAMSGEFVGTFLFLWSAFVIAQIANQAPETPDGGSNPAQLIMISFGFGFGVMVGVFITYRVSGGNLNPAVTLALVLA 122 (279)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCGGGCCCHHHHHHHHHHHHHHHHHHHHHHTTTTCCCCSHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccCCCCccHHHHHHHHHHHHHHHHHHHhhcCccccChHHHHHHHHc
Confidence 34677899999999999876642 11111 0 10100122468899999999999999999999999999999986
Q ss_pred hCCCCCCCcceehhhhhHHHHHHHHHHHHHHhhhh
Q 022966 243 YNKEKAWDDQWIFWVGPFIGAFVAAFYHQYILRAA 277 (289)
Q Consensus 243 ~~~~~~~~~~wvy~v~p~lGai~a~~~~~~~~~~~ 277 (289)
++..|.+...|+++|++|+++|+.+.+.+++.+
T Consensus 123 --g~~~~~~~~~YiiAQ~lGA~~ga~lv~~~~~~~ 155 (279)
T 2w2e_A 123 --RAIPPFRGILMAFTQIVAGMAAAGAASAMTPGE 155 (279)
T ss_dssp --TSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCSS
T ss_pred --CCCCHHHHHHHHHHHHHHHHHHHHHHHHHcccc
Confidence 457899999999999999999999988887543
No 27
>3kcu_A Probable formate transporter 1; TCDB ID 2.A.44.1.1, channel, cell inner membrane, cell membrane, membrane, transmembrane; HET: MA5; 2.24A {Escherichia coli O157} PDB: 3kcv_A 3q7k_A
Probab=92.56 E-value=4.5 Score=35.43 Aligned_cols=110 Identities=10% Similarity=0.070 Sum_probs=63.4
Q ss_pred hHHHHHHHHHHHHHHHHHhcCccccccCHHHHHHHHHhcCCchhHHHHHHHhhhhhHHHHHHHHHHHhh--hhhhhcCCC
Q 022966 84 ILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLGRKVSLIRALLYMVAQCLGAICGCGFVKAFQK--SYYNRYGGG 161 (289)
Q Consensus 84 ~~~~~~~~g~~v~~~i~~~~~iSGah~NPaVTla~~l~g~~~~~~~~~Yi~aQ~lGa~~g~~l~~~~~~--~~~~~~~~~ 161 (289)
.+..++.+.+.+++.+..-+..-=+ |--.+ ...+.+|++|.+.+.-|.-=++|=++|++++-.+.. ......++.
T Consensus 68 ~ll~g~~F~vGL~lVvl~G~ELFTg--n~l~~-~a~~~~~is~~~~lr~W~~v~~gNliGal~~a~l~~~s~~~~~~~~~ 144 (285)
T 3kcu_A 68 KLVGGICFSLGLILCVVCGADLFTS--TVLIV-VAKASGRITWGQLAKNWLNVYFGNLVGALLFVLLMWLSGEYMTANGQ 144 (285)
T ss_dssp HHHHHHHHTHHHHHHHHHTCCCTTT--THHHH-HHHTTTCCCHHHHTTTHHHHHHHHHHHHHHHHHHHHHHTGGGTTTTH
T ss_pred HHHHHHHHHHHHHHHHHhCcccccc--chHHH-HHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccCchH
Confidence 4456777777777666665553222 42233 345678999998877776666666666655444422 111000000
Q ss_pred -------ccccCCCCcchhhhHHHHHHHHHHHHHHHHhcCCC
Q 022966 162 -------ANELADGYNKGTGLGAEIIGTFVLVYTVFSATDPK 196 (289)
Q Consensus 162 -------~~~~~~~~s~~~~~~~E~~~T~~Lv~~v~~~~~~~ 196 (289)
.....-+.+..+.|+-=.+|-++.+..++.....|
T Consensus 145 ~~~~~~~ia~~K~~~~~~~~f~~GIlcN~lVclaVw~~~~ak 186 (285)
T 3kcu_A 145 WGLNVLQTADHKVHHTFIEAVCLGILANLMVCLAVWMSYSGR 186 (285)
T ss_dssp HHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 00012234667888888888888888888655444
No 28
>3kly_A Putative formate transporter 1; membrane protein, channel, structural genomics, PSI-2, protein structure initiative; HET: BOG; 2.10A {Vibrio cholerae} PDB: 3klz_A*
Probab=88.16 E-value=12 Score=32.48 Aligned_cols=109 Identities=11% Similarity=0.088 Sum_probs=64.2
Q ss_pred hHHHHHHHHHHHHHHHHHhcC-ccccccCHHHHHHHHHhcCCchhHHHHHHHhhhhhHHHHHHHHHHHhh-hhhhhcCCC
Q 022966 84 ILGIAWAFGGMIFILVYCTAG-ISGGHINPAVTFGLFLGRKVSLIRALLYMVAQCLGAICGCGFVKAFQK-SYYNRYGGG 161 (289)
Q Consensus 84 ~~~~~~~~g~~v~~~i~~~~~-iSGah~NPaVTla~~l~g~~~~~~~~~Yi~aQ~lGa~~g~~l~~~~~~-~~~~~~~~~ 161 (289)
.+..++.+.+.+.+.+..-+. .+|--+ .+ ...+.+|++|++.+.-|.-=++|=++|++++-.+.. ........+
T Consensus 67 ~ll~g~~F~vGL~lVvl~g~ELFTgn~l---~~-~~~~~~~is~~~~lr~W~~v~~gNliGal~~a~l~~~s~~~~~~~~ 142 (280)
T 3kly_A 67 KLLGGLAFSLGLILVVITGGELFTSSVL---IL-VAKASGKISWKELVRNWTVVYFGNLCGSIILVFIMLATRQFMEDGG 142 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCCTTTTCC---CC-SSSSSSSCCSSSHHHHHHHHHHHHHHHHHHHHHHHHHHTGGGTTTT
T ss_pred HHHHHHHHHHHHHHHHHccccccccchH---HH-HHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccCCch
Confidence 345677777777777766655 444333 22 235578889888887777777777777765544432 110000000
Q ss_pred --------ccccCCCCcchhhhHHHHHHHHHHHHHHHHhcCCC
Q 022966 162 --------ANELADGYNKGTGLGAEIIGTFVLVYTVFSATDPK 196 (289)
Q Consensus 162 --------~~~~~~~~s~~~~~~~E~~~T~~Lv~~v~~~~~~~ 196 (289)
.....-+.+..+.|+-=.+|-++.+..++.....|
T Consensus 143 ~~~~~~~~ia~~K~~~~~~~~f~~GIlcN~lVclaVw~~~~ak 185 (280)
T 3kly_A 143 QLGLNAMAISQHKLHHTFLQAFALGLMCNILVCLAVWMTFSAR 185 (280)
T ss_dssp HHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 00012234667888888888888888888665444
No 29
>3tds_E Formate/nitrite transporter; membrane protein; HET: PG4 BOG; 1.98A {Clostridium difficile} PDB: 3tdo_A* 3tdr_A* 3te0_A* 3tdx_A* 3te2_A* 3te1_A* 3tdp_A*
Probab=63.30 E-value=72 Score=27.39 Aligned_cols=184 Identities=10% Similarity=0.072 Sum_probs=91.9
Q ss_pred hhHHHHHHHHHHHHHHHHHhcCccccccCHHHHHHHHHhcCCchhHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhcCCCc
Q 022966 83 GILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLGRKVSLIRALLYMVAQCLGAICGCGFVKAFQKSYYNRYGGGA 162 (289)
Q Consensus 83 ~~~~~~~~~g~~v~~~i~~~~~iSGah~NPaVTla~~l~g~~~~~~~~~Yi~aQ~lGa~~g~~l~~~~~~~~~~~~~~~~ 162 (289)
..+..++.+.+.+.+.+..-+..-=+ |-.....-++.+|.+|.+.+--|.-=++|=++|+.++-.+....-. ...+.
T Consensus 63 ~~ll~g~~F~~Gl~lVvl~g~eLfTg--n~l~~~~~~~~~~~s~~~~lr~W~~v~~gNliGa~~~a~l~~~sg~-~~~~~ 139 (268)
T 3tds_E 63 TKIVMGLSFAIALSLVIMTGTELFTG--NNMVMSAGMLNKGVSIKDTSKIWAYSWVGNLIGALVLGIIFVGTGL-VDKGP 139 (268)
T ss_dssp HHHHHHHTCTHHHHHHHHHTCCCHHH--HHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT-TSSSH
T ss_pred HHHHHHHHHHHHHHHHHHhCcccccc--chHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-CCCcH
Confidence 34555666666666666554332111 4333334557899999999888887778877777665554421100 00000
Q ss_pred -c-------ccCCCCcchhhhHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCcchhHHHHHHHHHHHHHhcCCCCCccchh
Q 022966 163 -N-------ELADGYNKGTGLGAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPA 234 (289)
Q Consensus 163 -~-------~~~~~~s~~~~~~~E~~~T~~Lv~~v~~~~~~~~~~~~~~~~~~~~~~iGl~v~~~~~~~~~~tG~~~NPA 234 (289)
. ...-+.+..+.|+-=.+|-++.+..++.....|... -.-+.+=+.++ .+......=...|=.
T Consensus 140 ~~~~~~~ia~~K~~~~~~~~f~~gIlcN~lVclaVw~~~~~k~~~-------gKi~~i~~pi~--~Fv~~GfEH~VANm~ 210 (268)
T 3tds_E 140 VAEFFANTAASKASMPFTALFFRGILCNILVCVSVLCSFRTNSDT-------AKIIMIFLCLF--AIITSGFEHSVANMT 210 (268)
T ss_dssp HHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHHHHHSCSCHH-------HHHHHHHHHHH--HHHHHTCCCHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHhhcCchh-------hHHHHHHHHHH--HHHHccchHHHHHHH
Confidence 0 001134567778888888888888777654433211 11122222222 222223332233321
Q ss_pred hhHHHHHHhCC--CCCCCcc---eeh-hhhhHHHH-HHHHHHHHHHhhhhhh
Q 022966 235 RSFGAAVIYNK--EKAWDDQ---WIF-WVGPFIGA-FVAAFYHQYILRAAAI 279 (289)
Q Consensus 235 r~lg~~i~~~~--~~~~~~~---wvy-~v~p~lGa-i~a~~~~~~~~~~~~~ 279 (289)
-+...++.+. +..|.+. +++ .+|-++|+ ++-++.|.++++.+++
T Consensus 211 -~~~~~~~~~~~~~~t~~~~~~nlipvtlGNiiGG~~fvgl~y~~~~~~~~~ 261 (268)
T 3tds_E 211 -IYSVSLFSPTISTVTIGGAIYNLVAVTLGNIVGGALFMGLGTYILGKEKLN 261 (268)
T ss_dssp -HHHHHHHSSSCCSCCHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHCCC--
T ss_pred -HHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccc
Confidence 1222333321 2334332 222 36778876 4566777777766543
No 30
>4fc4_A Nitrite transporter NIRC; alpha-helical inner membrane protein, ION channel, cytoplasm membrane, transport protein; HET: BOG; 2.40A {Salmonella enterica subsp}
Probab=46.54 E-value=1.4e+02 Score=25.49 Aligned_cols=108 Identities=10% Similarity=0.053 Sum_probs=59.7
Q ss_pred hHHHHHHHHHHHHHHHHHhcCc-cccccCHHHHHHHHHhcCCchhHHHHHHHhhhhhHHHHHHHHHHHhhhh-hhhcCCC
Q 022966 84 ILGIAWAFGGMIFILVYCTAGI-SGGHINPAVTFGLFLGRKVSLIRALLYMVAQCLGAICGCGFVKAFQKSY-YNRYGGG 161 (289)
Q Consensus 84 ~~~~~~~~g~~v~~~i~~~~~i-SGah~NPaVTla~~l~g~~~~~~~~~Yi~aQ~lGa~~g~~l~~~~~~~~-~~~~~~~ 161 (289)
.+..++.+.+.+.+.+..-+.. +| |-.....-.+.||.+|++.+.-|.-=++|=++|++++-.+.... .......
T Consensus 58 ~ll~g~~F~vGl~lVvl~g~eLfTg---n~l~~~~~~~~~~~s~~~~lr~W~~v~~gNliGa~~~a~l~~~~g~~~~~~~ 134 (261)
T 4fc4_A 58 PLVMGATFGIALTLVIIAGSELFTG---HTMFLTLGVKAGTISHGQMWAILPQTWLGNLVGSVFVALLYSWGGGSLLPVD 134 (261)
T ss_dssp HHHHHHHTTHHHHHHHHTCCCCHHH---HHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTSSCT
T ss_pred HHHHHHHHHHHHHHHHHcCCccccc---chHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccCchH
Confidence 3555666666666555553332 22 44433344556889999998888777777777776554443321 0000000
Q ss_pred -cc--cc---CCCCcchhhhHHHHHHHHHHHHHHHHhcC
Q 022966 162 -AN--EL---ADGYNKGTGLGAEIIGTFVLVYTVFSATD 194 (289)
Q Consensus 162 -~~--~~---~~~~s~~~~~~~E~~~T~~Lv~~v~~~~~ 194 (289)
.. .. .-+.+..+.|+-=.+|-++....++....
T Consensus 135 ~~~~~~ia~~K~~~~~~~~f~~gIlcN~lVclaVw~~~~ 173 (261)
T 4fc4_A 135 TSIVHSVALAKTTAPATVLFFKGALCNWLVCLAIWMAIR 173 (261)
T ss_dssp TSHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 00 00 01234567777777777777777775443
No 31
>3s2u_A UDP-N-acetylglucosamine--N-acetylmuramyl-(pentape pyrophosphoryl-undecaprenol N-acetylglucosamine...; N-acetylglucosaminyl transferase; HET: UD1; 2.23A {Pseudomonas aeruginosa}
Probab=45.00 E-value=3.4 Score=37.05 Aligned_cols=21 Identities=33% Similarity=0.545 Sum_probs=17.3
Q ss_pred cCccccccCHHHHHHHHHhcC
Q 022966 103 AGISGGHINPAVTFGLFLGRK 123 (289)
Q Consensus 103 ~~iSGah~NPaVTla~~l~g~ 123 (289)
+.=||||++||++++-.+..+
T Consensus 9 ~GGTgGHi~palala~~L~~~ 29 (365)
T 3s2u_A 9 AGGTGGHVFPALACAREFQAR 29 (365)
T ss_dssp CCSSHHHHHHHHHHHHHHHHT
T ss_pred cCCCHHHHHHHHHHHHHHHhC
Confidence 444789999999999998753
Done!