BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 022967
(289 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2V91|A Chain A, Structure Of Strictosidine Synthase In Complex With
Strictosidine
pdb|2V91|B Chain B, Structure Of Strictosidine Synthase In Complex With
Strictosidine
Length = 302
Score = 78.2 bits (191), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 52/158 (32%), Positives = 79/158 (50%), Gaps = 5/158 (3%)
Query: 126 QENEILVCDADKGLLKVTEEG--VTVLASHVNGSRIN-LADDLIAATDGSIYFSVASTKF 182
Q N++ + D L V EG T LA+ V+G L + G +YF+ ST +
Sbjct: 81 QNNQLYIVDCYYHLSVVGSEGGHATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLY 140
Query: 183 GLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANGVALSKDEDYLVVCETFKFRC 242
+ + G+L+KYDPS ET++LL L G +S D +++V E +
Sbjct: 141 DDRGVQQIMDTSDKTGRLIKYDPSTKETTLLLKELHVPGGAEVSADSSFVLVAEFLSHQI 200
Query: 243 LKYWLKGESKEQTEIFVENLPGGPDNIKLAPDGSFWIA 280
+KYWL+G K E+ V+ +P P NIK DG FW++
Sbjct: 201 VKYWLEGPKKGTAEVLVK-IP-NPGNIKRNADGHFWVS 236
>pdb|2FP8|A Chain A, Structure Of Strictosidine Synthase, The Biosynthetic
Entry To The Monoterpenoid Indole Alkaloid Family
pdb|2FP8|B Chain B, Structure Of Strictosidine Synthase, The Biosynthetic
Entry To The Monoterpenoid Indole Alkaloid Family
pdb|2FP9|A Chain A, Crystal Structure Of Native Strictosidine Synthase
pdb|2FP9|B Chain B, Crystal Structure Of Native Strictosidine Synthase
pdb|2FPC|A Chain A, Structure Of Strictosidine Synthase, The Biosynthetic
Entry To The Monoterpenoid Indole Alkaloid Family
pdb|2FPC|B Chain B, Structure Of Strictosidine Synthase, The Biosynthetic
Entry To The Monoterpenoid Indole Alkaloid Family
pdb|2VAQ|A Chain A, Structure Of Strictosidine Synthase In Complex With
Inhibitor
pdb|2VAQ|B Chain B, Structure Of Strictosidine Synthase In Complex With
Inhibitor
pdb|3V1S|A Chain A, Scaffold Tailoring By A Newly Detected Pictet-Spenglerase
Ac-Tivity Of Strictosidine Synthase (Str1): From The
Common Tryp-Toline Skeleton To The Rare
Piperazino-Indole Framework
pdb|3V1S|B Chain B, Scaffold Tailoring By A Newly Detected Pictet-Spenglerase
Ac-Tivity Of Strictosidine Synthase (Str1): From The
Common Tryp-Toline Skeleton To The Rare
Piperazino-Indole Framework
Length = 322
Score = 78.2 bits (191), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 52/158 (32%), Positives = 79/158 (50%), Gaps = 5/158 (3%)
Query: 126 QENEILVCDADKGLLKVTEEG--VTVLASHVNGSRIN-LADDLIAATDGSIYFSVASTKF 182
Q N++ + D L V EG T LA+ V+G L + G +YF+ ST +
Sbjct: 90 QNNQLYIVDCYYHLSVVGSEGGHATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLY 149
Query: 183 GLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANGVALSKDEDYLVVCETFKFRC 242
+ + G+L+KYDPS ET++LL L G +S D +++V E +
Sbjct: 150 DDRGVQQIMDTSDKTGRLIKYDPSTKETTLLLKELHVPGGAEVSADSSFVLVAEFLSHQI 209
Query: 243 LKYWLKGESKEQTEIFVENLPGGPDNIKLAPDGSFWIA 280
+KYWL+G K E+ V+ +P P NIK DG FW++
Sbjct: 210 VKYWLEGPKKGTAEVLVK-IP-NPGNIKRNADGHFWVS 245
>pdb|2FPB|A Chain A, Structure Of Strictosidine Synthase, The Biosynthetic
Entry To The Monoterpenoid Indole Alkaloid Family
pdb|2FPB|B Chain B, Structure Of Strictosidine Synthase, The Biosynthetic
Entry To The Monoterpenoid Indole Alkaloid Family
Length = 322
Score = 72.4 bits (176), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 51/158 (32%), Positives = 75/158 (47%), Gaps = 5/158 (3%)
Query: 126 QENEILVCDADKGLLKVTEEG--VTVLASHVNGSRIN-LADDLIAATDGSIYFSVASTKF 182
Q N+ + D L V EG T LA+ V+G L + G +YF+ ST +
Sbjct: 90 QNNQXYIVDCYYHLSVVGSEGGHATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLY 149
Query: 183 GLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANGVALSKDEDYLVVCETFKFRC 242
+ G+L KYDPS ET++L L G +S D +++V E +
Sbjct: 150 DDRGVQQIXDTSDKTGRLXKYDPSTKETTLLXKELHVPGGAEVSADSSFVLVAEFLSHQI 209
Query: 243 LKYWLKGESKEQTEIFVENLPGGPDNIKLAPDGSFWIA 280
+KYWL+G K E+ V+ +P P NIK DG FW++
Sbjct: 210 VKYWLEGPKKGTAEVLVK-IP-NPGNIKRNADGHFWVS 245
>pdb|3DR2|A Chain A, Structural And Functional Analyses Of Xc5397 From
Xanthomonas Campestris: A Gluconolactonase Important In
Glucose Secondary Metabolic Pathways
pdb|3DR2|B Chain B, Structural And Functional Analyses Of Xc5397 From
Xanthomonas Campestris: A Gluconolactonase Important In
Glucose Secondary Metabolic Pathways
Length = 305
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 42/91 (46%), Gaps = 5/91 (5%)
Query: 149 VLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLH--NWGLDLLEAKPHGKLLKYDPS 206
+L G R+N +DLI A DG+I+F+ FGL + G H + + P
Sbjct: 120 LLVGRYAGKRLNSPNDLIVARDGAIWFT--DPPFGLRKPSQGCPADPELAHHSVYRLPPD 177
Query: 207 LNETSILLDSLFFANGVALSKDEDYLVVCET 237
+ + D L NG+A S DE L V +T
Sbjct: 178 GSPLQRMAD-LDHPNGLAFSPDEQTLYVSQT 207
>pdb|2DG1|A Chain A, Crystal Structure Of Drp35, A 35kda Drug Responsive
Protein From Staphylococcus Aureus, Complexed With Ca2+
pdb|2DG1|B Chain B, Crystal Structure Of Drp35, A 35kda Drug Responsive
Protein From Staphylococcus Aureus, Complexed With Ca2+
pdb|2DG1|C Chain C, Crystal Structure Of Drp35, A 35kda Drug Responsive
Protein From Staphylococcus Aureus, Complexed With Ca2+
pdb|2DG1|D Chain D, Crystal Structure Of Drp35, A 35kda Drug Responsive
Protein From Staphylococcus Aureus, Complexed With Ca2+
pdb|2DG1|E Chain E, Crystal Structure Of Drp35, A 35kda Drug Responsive
Protein From Staphylococcus Aureus, Complexed With Ca2+
pdb|2DG1|F Chain F, Crystal Structure Of Drp35, A 35kda Drug Responsive
Protein From Staphylococcus Aureus, Complexed With Ca2+
Length = 333
Score = 35.0 bits (79), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 36/150 (24%), Positives = 62/150 (41%), Gaps = 18/150 (12%)
Query: 138 GLLKVTEEGVTVLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPH 197
G+ TE G + + S DD++ + G YF T F ++ P
Sbjct: 113 GIFAATENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYF----TDFRGYS-------TNPL 161
Query: 198 GKLLKYDPSLNETSILLDSLFFANGVALSKDEDYLVVCETFKFRCLKYWLKGESKEQTEI 257
G + P + ++ ++ ANG+ALS DE L V ET R + L+ + +
Sbjct: 162 GGVYYVSPDFRTVTPIIQNISVANGIALSTDEKVLWVTETTANRLHRIALE-DDGVTIQP 220
Query: 258 FVENLP------GGPDNIKLAPDGSFWIAI 281
F +P GPD+ + D + ++A+
Sbjct: 221 FGATIPYYFTGHEGPDSCCIDSDDNLYVAM 250
>pdb|2DSO|A Chain A, Crystal Structure Of D138n Mutant Of Drp35, A 35kda Drug
Responsive Protein From Staphylococcus Aureus
pdb|2DSO|B Chain B, Crystal Structure Of D138n Mutant Of Drp35, A 35kda Drug
Responsive Protein From Staphylococcus Aureus
pdb|2DSO|C Chain C, Crystal Structure Of D138n Mutant Of Drp35, A 35kda Drug
Responsive Protein From Staphylococcus Aureus
pdb|2DSO|D Chain D, Crystal Structure Of D138n Mutant Of Drp35, A 35kda Drug
Responsive Protein From Staphylococcus Aureus
pdb|2DSO|E Chain E, Crystal Structure Of D138n Mutant Of Drp35, A 35kda Drug
Responsive Protein From Staphylococcus Aureus
pdb|2DSO|F Chain F, Crystal Structure Of D138n Mutant Of Drp35, A 35kda Drug
Responsive Protein From Staphylococcus Aureus
Length = 333
Score = 33.1 bits (74), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 35/150 (23%), Positives = 62/150 (41%), Gaps = 18/150 (12%)
Query: 138 GLLKVTEEGVTVLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPH 197
G+ TE G + + S +D++ + G YF T F ++ P
Sbjct: 113 GIFAATENGDNLQDIIEDLSTAYCINDMVFDSKGGFYF----TDFRGYS-------TNPL 161
Query: 198 GKLLKYDPSLNETSILLDSLFFANGVALSKDEDYLVVCETFKFRCLKYWLKGESKEQTEI 257
G + P + ++ ++ ANG+ALS DE L V ET R + L+ + +
Sbjct: 162 GGVYYVSPDFRTVTPIIQNISVANGIALSTDEKVLWVTETTANRLHRIALE-DDGVTIQP 220
Query: 258 FVENLP------GGPDNIKLAPDGSFWIAI 281
F +P GPD+ + D + ++A+
Sbjct: 221 FGATIPYYFTGHEGPDSCCIDSDDNLYVAM 250
>pdb|2DG0|A Chain A, Crystal Structure Of Drp35, A 35kda Drug Responsive
Protein From Staphylococcus Aureus
pdb|2DG0|B Chain B, Crystal Structure Of Drp35, A 35kda Drug Responsive
Protein From Staphylococcus Aureus
pdb|2DG0|C Chain C, Crystal Structure Of Drp35, A 35kda Drug Responsive
Protein From Staphylococcus Aureus
pdb|2DG0|D Chain D, Crystal Structure Of Drp35, A 35kda Drug Responsive
Protein From Staphylococcus Aureus
pdb|2DG0|E Chain E, Crystal Structure Of Drp35, A 35kda Drug Responsive
Protein From Staphylococcus Aureus
pdb|2DG0|F Chain F, Crystal Structure Of Drp35, A 35kda Drug Responsive
Protein From Staphylococcus Aureus
pdb|2DG0|G Chain G, Crystal Structure Of Drp35, A 35kda Drug Responsive
Protein From Staphylococcus Aureus
pdb|2DG0|H Chain H, Crystal Structure Of Drp35, A 35kda Drug Responsive
Protein From Staphylococcus Aureus
pdb|2DG0|I Chain I, Crystal Structure Of Drp35, A 35kda Drug Responsive
Protein From Staphylococcus Aureus
pdb|2DG0|J Chain J, Crystal Structure Of Drp35, A 35kda Drug Responsive
Protein From Staphylococcus Aureus
pdb|2DG0|K Chain K, Crystal Structure Of Drp35, A 35kda Drug Responsive
Protein From Staphylococcus Aureus
pdb|2DG0|L Chain L, Crystal Structure Of Drp35, A 35kda Drug Responsive
Protein From Staphylococcus Aureus
Length = 333
Score = 33.1 bits (74), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 36/149 (24%), Positives = 60/149 (40%), Gaps = 18/149 (12%)
Query: 138 GLLKVTEEGVTVLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPH 197
G+ TE G + + S DD + + G YF T F ++ P
Sbjct: 113 GIFAATENGDNLQDIIEDLSTAYCIDDXVFDSKGGFYF----TDFRGYS-------TNPL 161
Query: 198 GKLLKYDPSLNETSILLDSLFFANGVALSKDEDYLVVCETFKFRCLKYWLKGESKEQTEI 257
G + P + ++ ++ ANG+ALS DE L V ET R + L+ + +
Sbjct: 162 GGVYYVSPDFRTVTPIIQNISVANGIALSTDEKVLWVTETTANRLHRIALE-DDGVTIQP 220
Query: 258 FVENLP------GGPDNIKLAPDGSFWIA 280
F +P GPD+ + D + ++A
Sbjct: 221 FGATIPYYFTGHEGPDSCCIDSDDNLYVA 249
>pdb|3GRW|A Chain A, Fgfr3 In Complex With A Fab
Length = 241
Score = 33.1 bits (74), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 31/130 (23%), Positives = 55/130 (42%), Gaps = 29/130 (22%)
Query: 160 NLADDLIAATDGSIYFSVASTKFG--LHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSL 217
+L + + +D Y V KFG + LD+LE PH +L+ N+T++L +
Sbjct: 73 SLVMESVVPSDRGNYTCVVENKFGSIRQTYTLDVLERSPHRPILQAGLPANQTAVLGSDV 132
Query: 218 FFANGVALSKDEDYLVVCETFKFRCLKYWLKGESKEQTEIFVENLPGGPDNIKLAPDGSF 277
F V S + ++ WLK E+ + K+ PDG+
Sbjct: 133 EFHCKV-YSDAQPHI------------QWLK-----HVEV---------NGSKVGPDGTP 165
Query: 278 WIAILQVFIS 287
++ +L+ +IS
Sbjct: 166 YVTVLKSWIS 175
>pdb|1RY7|B Chain B, Crystal Structure Of The 3 Ig Form Of Fgfr3c In Complex
With Fgf1
Length = 334
Score = 32.0 bits (71), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 30/131 (22%), Positives = 54/131 (41%), Gaps = 29/131 (22%)
Query: 160 NLADDLIAATDGSIYFSVASTKFG--LHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSL 217
+L + + +D Y V KFG + LD+LE PH +L+ N+T++L +
Sbjct: 181 SLVMESVVPSDRGNYTCVVENKFGSIRQTYTLDVLERSPHRPILQAGLPANQTAVLGSDV 240
Query: 218 FFANGVALSKDEDYLVVCETFKFRCLKYWLKGESKEQTEIFVENLPGGPDNIKLAPDGSF 277
F V S + ++ WLK E+ + K+ PDG+
Sbjct: 241 EFHCKV-YSDAQPHI------------QWLK-----HVEV---------NGSKVGPDGTP 273
Query: 278 WIAILQVFISN 288
++ +L+ +N
Sbjct: 274 YVTVLKTAGAN 284
>pdb|1EVT|C Chain C, Crystal Structure Of Fgf1 In Complex With The
Extracellular Ligand Binding Domain Of Fgf Receptor 1
(Fgfr1)
pdb|1EVT|D Chain D, Crystal Structure Of Fgf1 In Complex With The
Extracellular Ligand Binding Domain Of Fgf Receptor 1
(Fgfr1)
Length = 225
Score = 27.7 bits (60), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 15/58 (25%), Positives = 28/58 (48%), Gaps = 2/58 (3%)
Query: 164 DLIAATDGSIYFSVASTKFGL--HNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFF 219
D + +D Y + ++G H + LD++E PH +L+ N+T L ++ F
Sbjct: 78 DSVVPSDKGNYTCIVENEYGSINHTYQLDVVERSPHRPILQAGLPANKTVALGSNVEF 135
>pdb|3OJV|C Chain C, Crystal Structure Of Fgf1 Complexed With The Ectodomain Of
Fgfr1c Exhibiting An Ordered Ligand
Specificity-Determining Betac'-Betae Loop
pdb|3OJV|D Chain D, Crystal Structure Of Fgf1 Complexed With The Ectodomain Of
Fgfr1c Exhibiting An Ordered Ligand
Specificity-Determining Betac'-Betae Loop
Length = 226
Score = 27.7 bits (60), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 15/58 (25%), Positives = 28/58 (48%), Gaps = 2/58 (3%)
Query: 164 DLIAATDGSIYFSVASTKFGL--HNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFF 219
D + +D Y + ++G H + LD++E PH +L+ N+T L ++ F
Sbjct: 79 DSVVPSDKGNYTCIVENEYGSINHTYQLDVVERSPHRPILQAGLPANKTVALGSNVEF 136
>pdb|1CVS|C Chain C, Crystal Structure Of A Dimeric Fgf2-Fgfr1 Complex
pdb|1CVS|D Chain D, Crystal Structure Of A Dimeric Fgf2-Fgfr1 Complex
pdb|1FQ9|C Chain C, Crystal Structure Of A Ternary Fgf2-Fgfr1-Heparin Complex
pdb|1FQ9|D Chain D, Crystal Structure Of A Ternary Fgf2-Fgfr1-Heparin Complex
Length = 225
Score = 27.7 bits (60), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 15/58 (25%), Positives = 28/58 (48%), Gaps = 2/58 (3%)
Query: 164 DLIAATDGSIYFSVASTKFGL--HNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFF 219
D + +D Y + ++G H + LD++E PH +L+ N+T L ++ F
Sbjct: 78 DSVVPSDKGNYTCIVENEYGSINHTYQLDVVERSPHRPILQAGLPANKTVALGSNVEF 135
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.139 0.429
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,715,238
Number of Sequences: 62578
Number of extensions: 291647
Number of successful extensions: 767
Number of sequences better than 100.0: 19
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 749
Number of HSP's gapped (non-prelim): 26
length of query: 289
length of database: 14,973,337
effective HSP length: 98
effective length of query: 191
effective length of database: 8,840,693
effective search space: 1688572363
effective search space used: 1688572363
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.3 bits)