Query 022967
Match_columns 289
No_of_seqs 209 out of 1978
Neff 9.8
Searched_HMMs 46136
Date Fri Mar 29 07:28:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022967.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/022967hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1520 Predicted alkaloid syn 100.0 4.6E-34 1E-38 241.9 21.5 255 29-285 16-286 (376)
2 PF08450 SGL: SMP-30/Gluconola 99.9 6.6E-25 1.4E-29 184.5 22.2 193 79-284 2-204 (246)
3 COG3386 Gluconolactonase [Carb 99.9 2.4E-23 5.3E-28 177.8 23.1 193 83-284 31-233 (307)
4 PF03088 Str_synth: Strictosid 99.8 5.9E-19 1.3E-23 121.8 7.5 88 163-250 1-89 (89)
5 PLN02919 haloacid dehalogenase 99.7 4.8E-16 1E-20 153.4 23.8 192 75-284 566-824 (1057)
6 COG4257 Vgb Streptogramin lyas 99.7 1.4E-15 3E-20 123.6 17.7 193 70-286 55-255 (353)
7 PLN02919 haloacid dehalogenase 99.7 3.4E-15 7.4E-20 147.4 24.1 191 76-285 623-880 (1057)
8 TIGR02604 Piru_Ver_Nterm putat 99.7 4.5E-15 9.8E-20 131.7 20.8 172 69-244 5-209 (367)
9 COG4257 Vgb Streptogramin lyas 99.6 5E-14 1.1E-18 114.6 19.2 198 66-288 93-300 (353)
10 PF08450 SGL: SMP-30/Gluconola 99.6 5.7E-14 1.2E-18 118.1 18.5 176 78-282 41-245 (246)
11 PF07995 GSDH: Glucose / Sorbo 99.6 2E-13 4.2E-18 119.4 18.0 159 76-239 1-202 (331)
12 KOG4499 Ca2+-binding protein R 99.5 7.6E-13 1.6E-17 105.5 16.3 190 87-285 26-233 (310)
13 PF10282 Lactonase: Lactonase, 99.5 8.3E-12 1.8E-16 110.1 22.9 201 64-283 75-312 (345)
14 TIGR03606 non_repeat_PQQ dehyd 99.4 7.5E-11 1.6E-15 105.7 21.5 170 67-239 21-250 (454)
15 COG3386 Gluconolactonase [Carb 99.4 1.3E-10 2.8E-15 99.7 18.8 146 75-239 109-277 (307)
16 PRK11028 6-phosphogluconolacto 99.3 6.2E-10 1.3E-14 97.6 23.1 187 77-282 80-293 (330)
17 TIGR02604 Piru_Ver_Nterm putat 99.3 3.1E-10 6.7E-15 100.9 20.5 205 68-283 64-340 (367)
18 COG2706 3-carboxymuconate cycl 99.3 3.2E-09 7E-14 89.8 23.2 188 77-282 89-309 (346)
19 PF10282 Lactonase: Lactonase, 99.3 3.3E-09 7.1E-14 93.6 23.6 190 76-283 36-265 (345)
20 PRK11028 6-phosphogluconolacto 99.3 4E-09 8.7E-14 92.5 23.6 197 64-282 24-247 (330)
21 KOG4659 Uncharacterized conser 99.3 1.1E-09 2.3E-14 105.1 20.8 198 63-283 393-681 (1899)
22 COG2133 Glucose/sorbosone dehy 99.2 1E-09 2.2E-14 96.3 17.0 169 68-241 59-262 (399)
23 COG3391 Uncharacterized conser 99.1 4.2E-08 9.1E-13 87.6 22.6 181 76-281 73-270 (381)
24 KOG4659 Uncharacterized conser 99.1 1E-08 2.2E-13 98.6 17.9 190 76-289 364-618 (1899)
25 PF06977 SdiA-regulated: SdiA- 99.0 2.4E-07 5.2E-12 77.2 19.9 190 76-283 21-241 (248)
26 TIGR03866 PQQ_ABC_repeats PQQ- 98.9 9.5E-07 2.1E-11 75.6 24.0 182 77-281 31-225 (300)
27 COG3391 Uncharacterized conser 98.9 4E-07 8.6E-12 81.4 21.7 185 77-283 31-227 (381)
28 TIGR03866 PQQ_ABC_repeats PQQ- 98.9 2.1E-06 4.6E-11 73.4 24.3 177 77-280 73-266 (300)
29 COG2706 3-carboxymuconate cycl 98.9 2.4E-06 5.2E-11 72.7 23.2 190 76-284 39-264 (346)
30 COG3204 Uncharacterized protei 98.8 6.8E-06 1.5E-10 68.5 22.8 193 76-286 85-306 (316)
31 KOG1214 Nidogen and related ba 98.7 2.6E-07 5.6E-12 85.8 14.1 179 79-282 1027-1215(1289)
32 PF03022 MRJP: Major royal jel 98.7 3.2E-06 6.9E-11 72.5 18.2 184 80-282 4-254 (287)
33 COG3292 Predicted periplasmic 98.6 6.7E-07 1.5E-11 80.3 12.5 197 81-285 210-440 (671)
34 TIGR03032 conserved hypothetic 98.6 8.1E-06 1.8E-10 69.0 17.1 192 76-285 48-263 (335)
35 PF02239 Cytochrom_D1: Cytochr 98.5 7.8E-06 1.7E-10 72.6 17.5 164 68-249 29-203 (369)
36 PF03022 MRJP: Major royal jel 98.5 5.7E-06 1.2E-10 70.9 15.9 145 121-283 5-205 (287)
37 KOG0291 WD40-repeat-containing 98.5 2.4E-05 5.1E-10 72.5 19.5 186 76-286 350-544 (893)
38 PF02239 Cytochrom_D1: Cytochr 98.5 2E-05 4.4E-10 70.0 18.8 169 88-281 5-189 (369)
39 KOG4499 Ca2+-binding protein R 98.5 1E-05 2.2E-10 65.3 14.9 140 79-236 111-273 (310)
40 TIGR03606 non_repeat_PQQ dehyd 98.5 2.4E-05 5.3E-10 70.6 18.6 166 108-284 22-250 (454)
41 PF01731 Arylesterase: Arylest 98.5 2.3E-06 5E-11 58.9 9.3 81 164-248 2-84 (86)
42 KOG1520 Predicted alkaloid syn 98.4 2.7E-06 5.9E-11 73.5 11.3 136 77-236 115-282 (376)
43 PRK04792 tolB translocation pr 98.4 0.00016 3.5E-09 66.1 21.9 149 81-250 222-384 (448)
44 PF07995 GSDH: Glucose / Sorbo 98.4 1.8E-05 3.8E-10 69.5 14.7 157 116-284 2-202 (331)
45 cd00200 WD40 WD40 domain, foun 98.3 0.00029 6.4E-09 58.6 21.7 178 78-283 95-281 (289)
46 KOG1214 Nidogen and related ba 98.3 1.3E-05 2.8E-10 74.9 13.9 153 74-250 1065-1228(1289)
47 KOG1446 Histone H3 (Lys4) meth 98.3 0.0003 6.6E-09 59.0 20.6 148 79-249 103-263 (311)
48 cd00200 WD40 WD40 domain, foun 98.3 0.00029 6.3E-09 58.7 21.1 176 80-282 55-238 (289)
49 COG3292 Predicted periplasmic 98.3 4.3E-06 9.3E-11 75.3 9.5 137 121-286 169-312 (671)
50 TIGR02658 TTQ_MADH_Hv methylam 98.3 0.00072 1.6E-08 59.3 22.9 177 78-281 106-317 (352)
51 PF05096 Glu_cyclase_2: Glutam 98.3 0.00044 9.6E-09 57.7 20.2 151 77-248 90-261 (264)
52 PRK04922 tolB translocation pr 98.2 0.00053 1.1E-08 62.5 22.0 149 81-250 208-370 (433)
53 PRK00178 tolB translocation pr 98.2 0.00098 2.1E-08 60.7 22.2 150 80-250 202-365 (430)
54 PRK02889 tolB translocation pr 98.2 0.0012 2.5E-08 60.2 22.5 149 81-250 200-362 (427)
55 PRK05137 tolB translocation pr 98.2 0.0016 3.5E-08 59.4 23.5 150 80-250 205-368 (435)
56 TIGR02658 TTQ_MADH_Hv methylam 98.2 0.00066 1.4E-08 59.6 19.9 79 164-250 252-332 (352)
57 KOG0318 WD40 repeat stress pro 98.1 0.00078 1.7E-08 60.3 20.0 179 78-283 322-507 (603)
58 PRK03629 tolB translocation pr 98.1 0.0013 2.8E-08 60.0 22.5 150 80-250 202-365 (429)
59 PF06977 SdiA-regulated: SdiA- 98.1 0.00037 8E-09 58.2 17.1 159 68-245 56-247 (248)
60 PF13360 PQQ_2: PQQ-like domai 98.1 0.0025 5.5E-08 52.7 22.4 176 83-286 32-224 (238)
61 KOG0315 G-protein beta subunit 98.1 0.00084 1.8E-08 54.8 18.1 182 77-283 84-278 (311)
62 TIGR03300 assembly_YfgL outer 98.0 0.0059 1.3E-07 54.5 24.6 139 83-249 62-209 (377)
63 PF07433 DUF1513: Protein of u 98.0 0.0019 4.1E-08 55.1 19.9 157 82-251 56-250 (305)
64 PRK02888 nitrous-oxide reducta 98.0 0.00062 1.3E-08 63.3 17.6 85 198-282 296-393 (635)
65 TIGR02800 propeller_TolB tol-p 98.0 0.0042 9.2E-08 56.1 23.1 147 82-249 195-355 (417)
66 PRK04043 tolB translocation pr 98.0 0.0047 1E-07 56.0 22.8 145 82-250 193-359 (419)
67 PRK05137 tolB translocation pr 98.0 0.0029 6.2E-08 57.8 21.4 133 98-251 183-325 (435)
68 PRK04792 tolB translocation pr 98.0 0.0028 6.1E-08 58.1 21.3 110 121-250 222-340 (448)
69 PF05096 Glu_cyclase_2: Glutam 97.9 0.00083 1.8E-08 56.1 15.6 184 69-281 37-249 (264)
70 PRK03629 tolB translocation pr 97.9 0.0037 8E-08 57.0 21.3 132 98-250 180-321 (429)
71 KOG2055 WD40 repeat protein [G 97.9 0.001 2.2E-08 58.6 16.5 187 79-286 216-410 (514)
72 PF01436 NHL: NHL repeat; Int 97.9 2.1E-05 4.6E-10 42.0 3.9 28 217-245 1-28 (28)
73 PRK11138 outer membrane biogen 97.9 0.014 2.9E-07 52.6 24.4 139 83-250 66-225 (394)
74 KOG2106 Uncharacterized conser 97.9 0.0046 1E-07 55.3 20.3 146 76-249 329-478 (626)
75 PRK01742 tolB translocation pr 97.9 0.0047 1E-07 56.3 21.0 145 80-250 207-363 (429)
76 PF13449 Phytase-like: Esteras 97.9 0.0078 1.7E-07 52.7 21.4 169 76-248 19-251 (326)
77 PRK02889 tolB translocation pr 97.9 0.0081 1.8E-07 54.7 22.1 132 98-250 177-318 (427)
78 PRK04922 tolB translocation pr 97.8 0.0033 7.2E-08 57.3 19.4 148 81-250 252-413 (433)
79 KOG0266 WD40 repeat-containing 97.8 0.0036 7.8E-08 57.5 18.9 150 76-249 203-365 (456)
80 PF05787 DUF839: Bacterial pro 97.8 0.0041 8.8E-08 57.8 18.7 201 77-283 244-522 (524)
81 PRK00178 tolB translocation pr 97.7 0.0081 1.8E-07 54.7 20.4 110 121-250 203-321 (430)
82 COG2133 Glucose/sorbosone dehy 97.7 0.0032 6.9E-08 55.9 16.5 60 77-137 177-260 (399)
83 KOG0318 WD40 repeat stress pro 97.7 0.014 3E-07 52.6 19.7 183 79-283 193-426 (603)
84 PRK01742 tolB translocation pr 97.7 0.016 3.5E-07 52.8 21.3 131 98-249 185-325 (429)
85 PRK04043 tolB translocation pr 97.6 0.0084 1.8E-07 54.4 18.5 133 98-251 170-312 (419)
86 PTZ00421 coronin; Provisional 97.6 0.054 1.2E-06 50.2 23.7 149 78-249 77-246 (493)
87 COG3204 Uncharacterized protei 97.6 0.0077 1.7E-07 50.7 16.0 159 69-247 121-311 (316)
88 KOG0286 G-protein beta subunit 97.6 0.033 7.2E-07 46.8 19.8 170 80-276 149-328 (343)
89 PF05787 DUF839: Bacterial pro 97.6 0.0023 5E-08 59.4 14.3 78 157-235 433-519 (524)
90 KOG0278 Serine/threonine kinas 97.6 0.015 3.3E-07 47.7 16.7 141 85-248 153-297 (334)
91 PRK11138 outer membrane biogen 97.5 0.0067 1.5E-07 54.6 16.5 132 87-246 256-392 (394)
92 KOG2139 WD40 repeat protein [G 97.5 0.0083 1.8E-07 51.7 15.7 187 76-285 140-367 (445)
93 KOG0289 mRNA splicing factor [ 97.5 0.026 5.6E-07 49.8 18.7 142 117-281 304-450 (506)
94 COG4946 Uncharacterized protei 97.5 0.0043 9.3E-08 55.2 14.1 129 90-236 374-507 (668)
95 TIGR02800 propeller_TolB tol-p 97.5 0.032 6.8E-07 50.5 20.6 132 98-250 171-312 (417)
96 PF08662 eIF2A: Eukaryotic tra 97.5 0.017 3.6E-07 46.6 16.5 131 98-251 40-182 (194)
97 KOG0279 G protein beta subunit 97.5 0.024 5.3E-07 47.2 17.1 188 77-286 106-307 (315)
98 PRK13684 Ycf48-like protein; P 97.5 0.066 1.4E-06 47.1 22.6 142 78-244 47-197 (334)
99 KOG0266 WD40 repeat-containing 97.5 0.031 6.7E-07 51.4 20.0 147 81-251 164-321 (456)
100 PF03088 Str_synth: Strictosid 97.5 0.00081 1.7E-08 46.6 7.3 62 81-143 2-85 (89)
101 KOG0315 G-protein beta subunit 97.5 0.017 3.7E-07 47.4 15.9 169 94-285 17-189 (311)
102 KOG0289 mRNA splicing factor [ 97.4 0.0054 1.2E-07 53.9 13.6 143 79-245 350-502 (506)
103 KOG1539 WD repeat protein [Gen 97.4 0.0078 1.7E-07 56.9 15.5 151 78-252 450-610 (910)
104 cd00216 PQQ_DH Dehydrogenases 97.4 0.035 7.5E-07 51.5 19.9 191 82-285 222-459 (488)
105 PRK01029 tolB translocation pr 97.4 0.096 2.1E-06 47.8 23.1 149 83-251 191-362 (428)
106 PF13360 PQQ_2: PQQ-like domai 97.4 0.03 6.5E-07 46.2 17.8 140 87-250 76-232 (238)
107 KOG2106 Uncharacterized conser 97.4 0.015 3.2E-07 52.2 16.1 145 80-246 250-396 (626)
108 KOG1446 Histone H3 (Lys4) meth 97.4 0.032 7E-07 47.1 17.3 139 76-235 140-292 (311)
109 smart00135 LY Low-density lipo 97.4 0.00078 1.7E-08 39.6 6.0 38 213-250 4-41 (43)
110 PF07433 DUF1513: Protein of u 97.4 0.025 5.3E-07 48.4 16.8 154 116-285 5-184 (305)
111 PTZ00420 coronin; Provisional 97.4 0.13 2.8E-06 48.4 23.6 149 77-249 75-249 (568)
112 KOG1274 WD40 repeat protein [G 97.4 0.018 3.9E-07 55.1 17.1 139 89-250 68-220 (933)
113 KOG0294 WD40 repeat-containing 97.4 0.023 5E-07 48.1 16.0 177 80-284 47-229 (362)
114 TIGR03032 conserved hypothetic 97.3 0.0054 1.2E-07 52.2 12.1 136 79-237 105-260 (335)
115 PF13449 Phytase-like: Esteras 97.3 0.019 4.1E-07 50.3 16.1 111 161-282 86-233 (326)
116 KOG1273 WD40 repeat protein [G 97.3 0.038 8.2E-07 46.9 16.6 184 79-288 26-221 (405)
117 KOG0263 Transcription initiati 97.3 0.023 4.9E-07 53.4 16.6 177 81-283 456-639 (707)
118 COG3823 Glutamine cyclotransfe 97.3 0.066 1.4E-06 43.0 17.2 40 198-237 196-248 (262)
119 KOG0278 Serine/threonine kinas 97.3 0.01 2.3E-07 48.7 12.7 89 137-250 165-256 (334)
120 PTZ00421 coronin; Provisional 97.2 0.086 1.9E-06 48.9 19.9 155 79-251 128-293 (493)
121 KOG2055 WD40 repeat protein [G 97.2 0.01 2.3E-07 52.5 12.9 185 78-286 305-506 (514)
122 PF14517 Tachylectin: Tachylec 97.2 0.019 4.1E-07 47.0 13.5 161 65-248 23-206 (229)
123 PF01436 NHL: NHL repeat; Int 97.2 0.00077 1.7E-08 35.9 3.7 27 76-102 1-28 (28)
124 KOG0272 U4/U6 small nuclear ri 97.1 0.015 3.2E-07 51.0 13.1 179 78-281 219-406 (459)
125 TIGR03300 assembly_YfgL outer 97.1 0.033 7.2E-07 49.7 16.1 131 87-245 241-376 (377)
126 COG3211 PhoX Predicted phospha 97.1 0.005 1.1E-07 56.2 10.4 74 157-236 497-572 (616)
127 KOG1274 WD40 repeat protein [G 97.1 0.045 9.7E-07 52.5 16.7 152 79-249 99-263 (933)
128 COG3211 PhoX Predicted phospha 97.1 0.085 1.8E-06 48.5 17.6 126 157-285 414-576 (616)
129 PTZ00420 coronin; Provisional 97.0 0.14 2.9E-06 48.3 19.5 158 78-250 127-295 (568)
130 COG3490 Uncharacterized protei 97.0 0.087 1.9E-06 44.4 16.0 129 84-237 43-181 (366)
131 KOG0291 WD40-repeat-containing 97.0 0.17 3.7E-06 47.9 19.5 149 76-249 14-176 (893)
132 PLN00033 photosystem II stabil 96.9 0.12 2.6E-06 46.4 17.4 143 83-245 245-396 (398)
133 KOG0272 U4/U6 small nuclear ri 96.9 0.035 7.6E-07 48.7 13.2 109 118-248 306-418 (459)
134 COG1520 FOG: WD40-like repeat 96.9 0.18 3.8E-06 45.0 18.1 142 84-249 65-218 (370)
135 PLN00181 protein SPA1-RELATED; 96.9 0.53 1.2E-05 46.5 23.0 147 79-249 486-649 (793)
136 KOG1036 Mitotic spindle checkp 96.9 0.23 5.1E-06 42.0 17.2 144 80-249 17-164 (323)
137 cd00216 PQQ_DH Dehydrogenases 96.8 0.26 5.6E-06 45.8 19.5 114 87-211 61-188 (488)
138 PRK13684 Ycf48-like protein; P 96.8 0.21 4.7E-06 43.9 17.9 179 81-287 94-283 (334)
139 PF14870 PSII_BNR: Photosynthe 96.8 0.23 5E-06 42.9 17.6 180 82-287 67-256 (302)
140 PF08662 eIF2A: Eukaryotic tra 96.8 0.13 2.9E-06 41.4 15.3 118 138-282 40-162 (194)
141 PRK13616 lipoprotein LpqB; Pro 96.8 0.5 1.1E-05 44.9 21.1 153 77-251 350-530 (591)
142 PF02333 Phytase: Phytase; In 96.7 0.11 2.3E-06 46.2 15.1 144 87-250 67-239 (381)
143 KOG0282 mRNA splicing factor [ 96.7 0.013 2.8E-07 52.2 9.3 150 77-250 300-464 (503)
144 KOG0646 WD40 repeat protein [G 96.6 0.32 7E-06 43.4 17.2 182 80-282 85-296 (476)
145 KOG0283 WD40 repeat-containing 96.6 0.11 2.3E-06 49.4 15.0 152 78-249 411-577 (712)
146 KOG4649 PQQ (pyrrolo-quinoline 96.6 0.35 7.6E-06 40.3 18.1 139 89-250 65-219 (354)
147 PLN00033 photosystem II stabil 96.6 0.53 1.2E-05 42.4 19.6 142 122-288 244-395 (398)
148 PF14517 Tachylectin: Tachylec 96.5 0.0088 1.9E-07 48.9 6.7 120 66-207 70-207 (229)
149 TIGR03118 PEPCTERM_chp_1 conse 96.5 0.44 9.6E-06 40.7 19.7 120 121-248 142-279 (336)
150 KOG2048 WD40 repeat protein [G 96.5 0.37 8E-06 45.0 17.2 156 79-252 385-552 (691)
151 KOG2048 WD40 repeat protein [G 96.5 0.51 1.1E-05 44.1 17.9 184 77-286 70-269 (691)
152 KOG1273 WD40 repeat protein [G 96.5 0.44 9.5E-06 40.7 16.2 150 79-248 68-226 (405)
153 KOG0973 Histone transcription 96.4 0.14 3.1E-06 49.9 15.0 100 79-179 132-239 (942)
154 PF14583 Pectate_lyase22: Olig 96.4 0.11 2.5E-06 45.9 13.2 142 83-227 42-197 (386)
155 KOG0263 Transcription initiati 96.4 0.099 2.1E-06 49.3 13.3 105 121-248 540-649 (707)
156 TIGR03075 PQQ_enz_alc_DH PQQ-d 96.3 0.96 2.1E-05 42.4 20.3 58 87-146 69-140 (527)
157 COG3490 Uncharacterized protei 96.3 0.096 2.1E-06 44.1 11.4 113 158-287 224-343 (366)
158 COG0823 TolB Periplasmic compo 96.3 0.48 1E-05 43.1 17.0 108 121-248 242-358 (425)
159 COG4946 Uncharacterized protei 96.3 0.67 1.5E-05 41.8 17.0 52 199-251 383-434 (668)
160 KOG0772 Uncharacterized conser 96.2 0.21 4.5E-06 45.3 13.9 185 79-280 170-381 (641)
161 KOG0286 G-protein beta subunit 96.2 0.67 1.4E-05 39.2 18.8 178 79-282 100-292 (343)
162 PRK02888 nitrous-oxide reducta 96.1 0.86 1.9E-05 43.0 17.9 143 78-249 236-405 (635)
163 KOG1539 WD repeat protein [Gen 96.1 0.14 3E-06 48.9 12.8 146 79-246 496-646 (910)
164 PRK01029 tolB translocation pr 96.1 1 2.3E-05 41.0 21.9 130 98-248 166-313 (428)
165 KOG0771 Prolactin regulatory e 96.1 0.25 5.4E-06 43.4 13.4 149 80-248 148-311 (398)
166 PF07494 Reg_prop: Two compone 96.1 0.0056 1.2E-07 31.2 2.1 19 265-283 6-24 (24)
167 KOG0271 Notchless-like WD40 re 96.1 0.46 9.9E-06 41.6 14.6 74 161-252 369-443 (480)
168 KOG0293 WD40 repeat-containing 96.0 0.51 1.1E-05 41.7 14.8 149 79-249 227-385 (519)
169 PLN00181 protein SPA1-RELATED; 95.9 2 4.2E-05 42.6 23.4 143 80-248 536-690 (793)
170 KOG0296 Angio-associated migra 95.9 1 2.2E-05 39.2 19.5 146 81-249 69-221 (399)
171 KOG0282 mRNA splicing factor [ 95.9 0.2 4.3E-06 44.9 12.0 176 81-280 263-449 (503)
172 PF14870 PSII_BNR: Photosynthe 95.9 1 2.2E-05 38.9 19.7 183 77-286 17-209 (302)
173 TIGR03118 PEPCTERM_chp_1 conse 95.8 0.65 1.4E-05 39.7 14.4 29 220-248 140-170 (336)
174 KOG0646 WD40 repeat protein [G 95.8 1 2.2E-05 40.4 16.1 150 76-250 123-309 (476)
175 PF02333 Phytase: Phytase; In 95.8 0.51 1.1E-05 42.0 14.3 100 78-179 157-280 (381)
176 PF05694 SBP56: 56kDa selenium 95.8 0.7 1.5E-05 41.6 15.0 199 87-289 87-338 (461)
177 KOG1407 WD40 repeat protein [F 95.7 0.99 2.2E-05 37.6 15.5 148 78-248 66-219 (313)
178 KOG0279 G protein beta subunit 95.7 1 2.3E-05 37.8 18.8 165 90-280 31-209 (315)
179 TIGR03075 PQQ_enz_alc_DH PQQ-d 95.6 2.1 4.4E-05 40.3 19.2 162 82-249 116-334 (527)
180 KOG0265 U5 snRNP-specific prot 95.6 0.53 1.2E-05 39.9 12.8 65 81-146 52-122 (338)
181 KOG0273 Beta-transducin family 95.4 1.5 3.2E-05 39.5 15.7 146 77-247 236-388 (524)
182 KOG0772 Uncharacterized conser 95.4 0.29 6.3E-06 44.4 11.2 153 77-246 318-485 (641)
183 KOG0271 Notchless-like WD40 re 95.3 0.52 1.1E-05 41.3 12.1 142 117-283 117-267 (480)
184 KOG0301 Phospholipase A2-activ 95.2 1.3 2.9E-05 41.6 15.4 101 121-246 145-247 (745)
185 KOG1445 Tumor-specific antigen 95.2 0.28 6.2E-06 45.6 10.8 146 80-248 631-798 (1012)
186 PF10647 Gmad1: Lipoprotein Lp 95.1 1.8 3.9E-05 36.4 20.4 154 78-250 25-199 (253)
187 TIGR02276 beta_rpt_yvtn 40-res 95.0 0.086 1.9E-06 30.5 5.0 42 227-272 1-42 (42)
188 PF00058 Ldl_recept_b: Low-den 95.0 0.16 3.5E-06 29.7 6.0 40 171-227 1-42 (42)
189 PF06433 Me-amine-dh_H: Methyl 95.0 2.3 5E-05 37.2 18.2 167 76-250 134-322 (342)
190 PF00058 Ldl_recept_b: Low-den 94.9 0.095 2E-06 30.7 4.9 40 231-273 2-42 (42)
191 KOG0319 WD40-repeat-containing 94.9 1.6 3.5E-05 41.4 14.9 147 82-249 25-180 (775)
192 KOG0293 WD40 repeat-containing 94.8 0.59 1.3E-05 41.4 11.3 147 81-250 274-427 (519)
193 KOG2919 Guanine nucleotide-bin 94.8 0.67 1.5E-05 39.8 11.2 147 83-248 118-281 (406)
194 KOG0283 WD40 repeat-containing 94.7 2.7 5.8E-05 40.3 16.2 144 82-250 375-534 (712)
195 PF00930 DPPIV_N: Dipeptidyl p 94.7 2.8 6.2E-05 37.1 17.3 142 122-284 189-348 (353)
196 KOG0275 Conserved WD40 repeat- 94.7 0.43 9.3E-06 40.8 9.9 107 121-250 311-425 (508)
197 KOG1538 Uncharacterized conser 94.7 4.1 8.8E-05 38.7 17.1 56 78-134 14-71 (1081)
198 PF08553 VID27: VID27 cytoplas 94.5 1.1 2.4E-05 43.7 13.6 150 77-246 481-645 (794)
199 KOG0285 Pleiotropic regulator 94.5 1.3 2.8E-05 38.6 12.4 143 81-248 282-439 (460)
200 KOG2139 WD40 repeat protein [G 94.5 3.1 6.6E-05 36.4 15.2 70 159-246 195-265 (445)
201 KOG0275 Conserved WD40 repeat- 94.5 2.9 6.3E-05 36.0 14.9 53 198-252 415-471 (508)
202 COG1520 FOG: WD40-like repeat 94.4 0.76 1.6E-05 41.0 11.8 90 87-178 111-205 (370)
203 PF14583 Pectate_lyase22: Olig 94.4 0.64 1.4E-05 41.3 10.8 82 197-282 59-143 (386)
204 KOG1963 WD40 repeat protein [G 94.3 2.5 5.4E-05 40.8 15.0 148 80-250 209-377 (792)
205 KOG1215 Low-density lipoprotei 94.3 2.5 5.5E-05 42.3 16.2 169 87-279 448-626 (877)
206 KOG0643 Translation initiation 94.1 3 6.5E-05 35.0 18.1 178 82-282 16-209 (327)
207 KOG1272 WD40-repeat-containing 94.1 1.4 3E-05 39.7 12.2 172 76-249 129-324 (545)
208 KOG0639 Transducin-like enhanc 94.1 0.63 1.4E-05 42.2 10.2 136 121-284 514-654 (705)
209 KOG0310 Conserved WD40 repeat- 94.1 3.8 8.3E-05 37.0 14.9 149 77-248 69-225 (487)
210 KOG0973 Histone transcription 94.0 2.2 4.7E-05 42.1 14.4 139 79-240 72-242 (942)
211 KOG0640 mRNA cleavage stimulat 93.7 0.89 1.9E-05 38.8 9.8 135 80-233 176-321 (430)
212 KOG0310 Conserved WD40 repeat- 93.5 5.7 0.00012 36.0 16.4 178 83-287 117-304 (487)
213 KOG0303 Actin-binding protein 93.4 3.2 7E-05 36.7 13.0 141 92-250 149-296 (472)
214 KOG0284 Polyadenylation factor 93.4 0.79 1.7E-05 40.5 9.3 145 82-248 102-252 (464)
215 COG0823 TolB Periplasmic compo 93.4 5.2 0.00011 36.5 15.1 74 164-252 242-318 (425)
216 KOG0299 U3 snoRNP-associated p 93.4 5.8 0.00013 35.7 14.8 198 81-281 207-444 (479)
217 KOG0639 Transducin-like enhanc 93.3 1 2.2E-05 41.0 10.0 101 160-283 466-572 (705)
218 PF05935 Arylsulfotrans: Aryls 93.2 7 0.00015 36.3 16.8 156 87-249 113-302 (477)
219 KOG0319 WD40-repeat-containing 93.2 3.2 6.9E-05 39.5 13.4 92 82-177 111-210 (775)
220 KOG2315 Predicted translation 93.2 6.1 0.00013 36.5 14.8 131 98-250 252-392 (566)
221 KOG4378 Nuclear protein COP1 [ 93.1 2.6 5.6E-05 38.4 12.2 86 197-286 186-274 (673)
222 TIGR02276 beta_rpt_yvtn 40-res 93.1 0.59 1.3E-05 26.8 5.9 41 169-226 1-42 (42)
223 KOG0273 Beta-transducin family 93.1 6.7 0.00014 35.5 14.9 138 119-283 238-379 (524)
224 KOG0643 Translation initiation 93.0 4.9 0.00011 33.8 14.4 142 79-241 55-213 (327)
225 KOG0645 WD40 repeat protein [G 92.9 5 0.00011 33.7 22.2 154 76-248 14-180 (312)
226 KOG0288 WD40 repeat protein Ti 92.9 4.9 0.00011 35.7 13.3 124 95-237 320-451 (459)
227 KOG0306 WD40-repeat-containing 92.6 5.2 0.00011 38.4 13.9 148 78-249 510-665 (888)
228 KOG0281 Beta-TrCP (transducin 92.6 0.79 1.7E-05 39.7 8.0 50 199-250 341-390 (499)
229 KOG0645 WD40 repeat protein [G 92.5 5.7 0.00012 33.4 14.3 112 117-248 16-135 (312)
230 COG4247 Phy 3-phytase (myo-ino 92.4 5.8 0.00013 33.2 13.0 23 121-143 209-232 (364)
231 KOG4378 Nuclear protein COP1 [ 92.3 1.6 3.5E-05 39.7 9.9 93 92-207 182-281 (673)
232 KOG4328 WD40 protein [Function 92.3 2.6 5.7E-05 37.8 11.0 148 79-248 189-353 (498)
233 KOG0292 Vesicle coat complex C 92.3 11 0.00024 37.2 15.7 126 76-236 250-384 (1202)
234 PF14269 Arylsulfotran_2: Aryl 91.9 7.7 0.00017 33.6 13.7 121 121-249 148-290 (299)
235 KOG0299 U3 snoRNP-associated p 91.8 9.6 0.00021 34.4 14.7 73 161-248 382-456 (479)
236 PF07494 Reg_prop: Two compone 91.7 0.26 5.5E-06 25.0 2.6 18 160-177 5-22 (24)
237 KOG0313 Microtubule binding pr 91.6 9 0.0002 33.8 14.3 152 76-250 193-378 (423)
238 PF06433 Me-amine-dh_H: Methyl 91.5 9.1 0.0002 33.6 14.5 110 87-219 195-333 (342)
239 PF05935 Arylsulfotrans: Aryls 91.4 9.9 0.00022 35.3 14.7 112 82-212 153-307 (477)
240 KOG0268 Sof1-like rRNA process 91.2 3 6.6E-05 36.4 10.1 49 197-247 209-258 (433)
241 KOG4441 Proteins containing BT 91.2 8.9 0.00019 36.5 14.3 144 87-250 332-501 (571)
242 KOG1408 WD40 repeat protein [F 90.5 16 0.00034 35.3 14.6 100 161-279 598-709 (1080)
243 KOG0268 Sof1-like rRNA process 90.4 6.6 0.00014 34.4 11.4 148 76-250 66-220 (433)
244 PF05694 SBP56: 56kDa selenium 90.4 1.3 2.7E-05 40.0 7.3 63 220-282 314-393 (461)
245 KOG0641 WD40 repeat protein [G 90.2 9.2 0.0002 31.3 15.6 72 161-250 233-305 (350)
246 PF06739 SBBP: Beta-propeller 90.1 0.29 6.2E-06 28.0 2.2 21 265-285 14-34 (38)
247 KOG0650 WD40 repeat nucleolar 90.0 17 0.00037 34.2 15.5 63 218-285 567-630 (733)
248 COG5276 Uncharacterized conser 90.0 12 0.00025 32.2 15.6 179 80-287 175-364 (370)
249 TIGR03074 PQQ_membr_DH membran 89.8 22 0.00048 35.1 18.8 121 87-211 260-427 (764)
250 KOG0284 Polyadenylation factor 89.7 3.9 8.5E-05 36.3 9.6 149 77-248 181-337 (464)
251 KOG1215 Low-density lipoprotei 89.4 18 0.00038 36.5 15.5 149 76-247 479-638 (877)
252 PHA02713 hypothetical protein; 89.3 20 0.00044 34.0 16.1 156 87-249 303-489 (557)
253 smart00135 LY Low-density lipo 89.2 1.2 2.7E-05 25.4 4.6 33 75-107 7-41 (43)
254 KOG0285 Pleiotropic regulator 89.1 15 0.00033 32.3 13.7 99 74-178 149-254 (460)
255 PHA02713 hypothetical protein; 89.1 9.6 0.00021 36.1 12.7 70 168-250 461-535 (557)
256 KOG0316 Conserved WD40 repeat- 89.0 12 0.00026 31.0 15.9 172 79-281 20-201 (307)
257 KOG1407 WD40 repeat protein [F 88.9 13 0.00028 31.3 17.7 176 76-280 20-206 (313)
258 KOG4547 WD40 repeat-containing 88.5 21 0.00045 33.2 16.9 125 91-238 74-210 (541)
259 KOG2110 Uncharacterized conser 88.3 17 0.00037 31.9 12.9 81 95-179 151-238 (391)
260 KOG2096 WD40 repeat protein [G 87.8 17 0.00037 31.5 14.9 151 78-246 88-256 (420)
261 KOG2110 Uncharacterized conser 87.7 16 0.00036 32.1 11.9 70 161-248 175-248 (391)
262 PF01731 Arylesterase: Arylest 87.5 2.4 5.1E-05 29.2 5.6 47 95-143 34-82 (86)
263 KOG1445 Tumor-specific antigen 87.2 11 0.00023 35.8 11.1 116 116-248 721-844 (1012)
264 KOG0265 U5 snRNP-specific prot 87.0 19 0.0004 30.9 13.0 50 198-248 196-246 (338)
265 KOG0292 Vesicle coat complex C 86.9 20 0.00043 35.5 13.0 148 78-250 11-167 (1202)
266 KOG2096 WD40 repeat protein [G 86.6 20 0.00044 31.0 16.0 61 217-281 331-391 (420)
267 COG3823 Glutamine cyclotransfe 86.6 13 0.00027 30.4 9.9 51 127-177 185-247 (262)
268 KOG0306 WD40-repeat-containing 86.5 33 0.00071 33.3 16.5 160 78-250 375-540 (888)
269 KOG2919 Guanine nucleotide-bin 86.3 11 0.00024 32.7 10.0 145 82-248 213-369 (406)
270 KOG2321 WD40 repeat protein [G 86.3 9 0.0002 35.7 10.1 106 121-249 138-259 (703)
271 KOG0301 Phospholipase A2-activ 86.2 32 0.0007 32.9 14.5 91 82-178 146-238 (745)
272 PF02897 Peptidase_S9_N: Proly 86.0 8.3 0.00018 34.8 10.1 103 162-279 126-242 (414)
273 PF08553 VID27: VID27 cytoplas 85.9 2 4.3E-05 42.0 6.2 65 79-143 580-645 (794)
274 KOG0771 Prolactin regulatory e 85.5 26 0.00057 31.2 13.1 149 79-248 189-354 (398)
275 KOG0295 WD40 repeat-containing 85.0 26 0.00057 30.8 14.8 53 197-250 313-366 (406)
276 PF00930 DPPIV_N: Dipeptidyl p 84.6 11 0.00024 33.3 10.1 92 129-237 250-347 (353)
277 KOG3881 Uncharacterized conser 84.6 29 0.00062 30.9 16.4 83 195-280 223-307 (412)
278 KOG1524 WD40 repeat-containing 84.0 22 0.00048 33.1 11.3 85 89-179 77-166 (737)
279 PF04053 Coatomer_WDAD: Coatom 84.0 35 0.00076 31.4 13.5 147 69-248 26-175 (443)
280 PF11768 DUF3312: Protein of u 83.9 9.1 0.0002 35.6 9.1 65 78-143 261-327 (545)
281 PRK14131 N-acetylneuraminic ac 83.6 32 0.00069 30.7 16.1 39 198-236 189-228 (376)
282 KOG1538 Uncharacterized conser 83.6 43 0.00094 32.2 16.3 113 117-250 134-254 (1081)
283 PHA03098 kelch-like protein; P 83.3 40 0.00087 31.6 16.5 145 87-250 294-466 (534)
284 KOG0264 Nucleosome remodeling 83.0 35 0.00076 30.7 12.5 146 82-248 183-347 (422)
285 KOG0296 Angio-associated migra 83.0 32 0.0007 30.3 20.0 70 77-146 149-222 (399)
286 TIGR03074 PQQ_membr_DH membran 82.5 54 0.0012 32.5 15.8 59 87-146 194-280 (764)
287 KOG3881 Uncharacterized conser 82.2 29 0.00063 30.8 11.0 108 121-250 207-322 (412)
288 KOG3914 WD repeat protein WDR4 82.1 26 0.00057 31.1 10.7 40 208-248 142-181 (390)
289 KOG0294 WD40 repeat-containing 81.5 35 0.00075 29.6 16.1 147 79-250 130-283 (362)
290 KOG2321 WD40 repeat protein [G 81.4 18 0.0004 33.8 9.9 45 203-248 299-343 (703)
291 KOG3914 WD repeat protein WDR4 81.0 40 0.00086 30.0 12.9 147 79-249 65-224 (390)
292 KOG0647 mRNA export protein (c 80.8 36 0.00077 29.3 16.4 72 79-151 30-110 (347)
293 KOG1036 Mitotic spindle checkp 80.7 35 0.00077 29.3 10.7 101 121-246 18-122 (323)
294 PHA02790 Kelch-like protein; P 80.7 48 0.0011 30.7 15.1 136 87-249 318-471 (480)
295 KOG1408 WD40 repeat protein [F 79.7 15 0.00033 35.3 9.0 65 80-146 600-673 (1080)
296 PRK13616 lipoprotein LpqB; Pro 78.3 65 0.0014 30.9 14.7 110 117-246 449-565 (591)
297 smart00564 PQQ beta-propeller 78.1 4.9 0.00011 21.4 3.6 23 87-109 6-29 (33)
298 COG4247 Phy 3-phytase (myo-ino 77.7 42 0.00091 28.3 14.0 88 199-286 127-228 (364)
299 PHA03098 kelch-like protein; P 77.5 63 0.0014 30.3 16.4 147 87-250 342-513 (534)
300 TIGR02608 delta_60_rpt delta-6 76.8 8.9 0.00019 23.9 4.7 35 162-206 3-37 (55)
301 KOG1009 Chromatin assembly com 76.4 28 0.0006 31.1 9.2 96 117-230 67-178 (434)
302 KOG0640 mRNA cleavage stimulat 75.7 53 0.0011 28.5 13.6 95 79-178 219-324 (430)
303 KOG0649 WD40 repeat protein [G 75.1 48 0.001 27.7 16.1 70 160-249 115-187 (325)
304 KOG0305 Anaphase promoting com 75.0 72 0.0016 29.7 13.9 149 79-249 304-462 (484)
305 KOG0281 Beta-TrCP (transducin 74.3 21 0.00046 31.3 7.8 171 77-282 198-377 (499)
306 PF11725 AvrE: Pathogenicity f 73.9 29 0.00062 36.9 9.8 139 82-248 368-516 (1774)
307 PF14269 Arylsulfotran_2: Aryl 73.7 59 0.0013 28.1 15.3 36 76-111 143-180 (299)
308 PF13570 PQQ_3: PQQ-like domai 73.6 5.8 0.00013 22.5 3.2 22 82-104 17-38 (40)
309 KOG4441 Proteins containing BT 73.4 87 0.0019 29.9 13.7 137 98-251 302-455 (571)
310 PF14339 DUF4394: Domain of un 73.1 53 0.0012 27.3 12.4 73 121-211 31-108 (236)
311 PF14339 DUF4394: Domain of un 72.5 33 0.00071 28.5 8.3 70 161-249 28-104 (236)
312 PF04762 IKI3: IKI3 family; I 71.0 1.2E+02 0.0027 30.8 13.6 49 197-246 96-148 (928)
313 KOG1963 WD40 repeat protein [G 69.7 1.2E+02 0.0026 29.9 16.4 146 79-248 163-322 (792)
314 KOG0649 WD40 repeat protein [G 68.8 69 0.0015 26.9 15.2 66 80-146 118-188 (325)
315 smart00284 OLF Olfactomedin-li 68.7 71 0.0015 27.0 17.4 149 76-247 74-251 (255)
316 PRK10115 protease 2; Provision 68.3 69 0.0015 31.3 11.0 74 161-250 128-209 (686)
317 KOG0307 Vesicle coat complex C 68.2 25 0.00054 35.4 7.8 133 95-250 182-329 (1049)
318 KOG0308 Conserved WD40 repeat- 68.1 1.2E+02 0.0025 29.2 11.8 65 74-139 169-236 (735)
319 PF00400 WD40: WD domain, G-be 67.7 18 0.00039 19.8 5.5 30 216-246 10-39 (39)
320 KOG0322 G-protein beta subunit 66.2 19 0.0004 30.4 5.6 69 161-247 253-322 (323)
321 PF01011 PQQ: PQQ enzyme repea 66.2 20 0.00044 20.0 4.3 22 88-109 1-23 (38)
322 PF11768 DUF3312: Protein of u 66.1 46 0.001 31.2 8.7 50 197-248 280-329 (545)
323 KOG2394 WD40 protein DMR-N9 [G 65.5 28 0.0006 32.4 7.0 71 161-249 292-363 (636)
324 KOG0308 Conserved WD40 repeat- 65.4 1.3E+02 0.0029 28.8 15.4 182 78-286 119-321 (735)
325 PHA02790 Kelch-like protein; P 65.3 1.2E+02 0.0025 28.2 16.2 140 87-250 271-425 (480)
326 KOG0321 WD40 repeat-containing 64.6 1.4E+02 0.0029 28.7 13.4 64 223-286 223-295 (720)
327 KOG0650 WD40 repeat nucleolar 64.3 49 0.0011 31.3 8.4 68 161-248 568-637 (733)
328 KOG0918 Selenium-binding prote 63.5 23 0.0005 31.7 6.0 29 222-250 316-344 (476)
329 KOG0277 Peroxisomal targeting 63.3 56 0.0012 27.5 7.8 76 162-248 11-91 (311)
330 KOG0303 Actin-binding protein 63.1 68 0.0015 28.8 8.7 52 197-249 153-204 (472)
331 COG5276 Uncharacterized conser 63.1 1E+02 0.0022 26.7 17.1 107 121-250 176-287 (370)
332 KOG0277 Peroxisomal targeting 62.7 95 0.0021 26.2 12.1 51 197-248 171-221 (311)
333 KOG1009 Chromatin assembly com 62.3 1.1E+02 0.0025 27.4 9.9 31 218-249 124-154 (434)
334 KOG0276 Vesicle coat complex C 62.2 1.5E+02 0.0033 28.4 13.1 27 77-103 352-378 (794)
335 COG4222 Uncharacterized protei 60.3 1.3E+02 0.0028 27.1 10.2 31 221-251 203-248 (391)
336 KOG0305 Anaphase promoting com 59.5 1.5E+02 0.0033 27.6 17.0 135 92-247 275-418 (484)
337 KOG0288 WD40 repeat protein Ti 58.0 28 0.00062 31.1 5.6 48 82-129 393-444 (459)
338 KOG2395 Protein involved in va 56.6 78 0.0017 29.7 8.2 65 163-247 434-499 (644)
339 KOG0316 Conserved WD40 repeat- 56.2 1.2E+02 0.0026 25.4 13.4 118 116-257 18-140 (307)
340 KOG1188 WD40 repeat protein [G 54.8 1.5E+02 0.0033 26.1 14.2 146 88-250 41-198 (376)
341 KOG1310 WD40 repeat protein [G 54.7 1.3E+02 0.0028 28.4 9.3 108 161-285 52-171 (758)
342 PRK13613 lipoprotein LpqB; Pro 54.3 2.1E+02 0.0045 27.6 19.7 155 78-251 364-542 (599)
343 PRK10893 lipopolysaccharide ex 54.3 89 0.0019 25.1 7.6 23 17-39 3-25 (192)
344 KOG2314 Translation initiation 54.2 2E+02 0.0043 27.3 11.1 82 199-283 473-557 (698)
345 PF13964 Kelch_6: Kelch motif 54.1 34 0.00073 20.2 4.1 37 167-214 8-44 (50)
346 KOG4283 Transcription-coupled 53.8 1.5E+02 0.0032 25.7 10.0 56 90-146 204-278 (397)
347 KOG0307 Vesicle coat complex C 53.5 36 0.00079 34.3 6.1 75 160-249 207-285 (1049)
348 KOG2395 Protein involved in va 53.0 39 0.00084 31.5 5.8 65 79-143 433-498 (644)
349 KOG0647 mRNA export protein (c 52.4 1.6E+02 0.0034 25.6 13.0 59 216-279 250-309 (347)
350 TIGR03548 mutarot_permut cycli 52.0 1.6E+02 0.0034 25.5 18.8 73 127-215 123-203 (323)
351 PF08309 LVIVD: LVIVD repeat; 50.0 50 0.0011 19.2 4.2 28 221-251 5-32 (42)
352 KOG3567 Peptidylglycine alpha- 49.8 35 0.00075 31.2 4.9 20 264-283 467-486 (501)
353 COG4447 Uncharacterized protei 49.4 1.3E+02 0.0027 25.9 7.8 21 217-237 170-190 (339)
354 KOG4649 PQQ (pyrrolo-quinoline 49.4 1.7E+02 0.0036 25.0 16.7 137 85-249 21-166 (354)
355 KOG0321 WD40 repeat-containing 48.4 2.6E+02 0.0056 26.9 10.7 63 81-143 223-299 (720)
356 KOG0276 Vesicle coat complex C 45.8 2.9E+02 0.0062 26.7 17.1 142 87-249 67-216 (794)
357 KOG0313 Microtubule binding pr 45.5 2.3E+02 0.0049 25.4 14.3 99 77-177 261-364 (423)
358 PF15240 Pro-rich: Proline-ric 45.4 14 0.0003 29.2 1.6 15 21-35 1-15 (179)
359 PRK07021 fliL flagellar basal 45.3 40 0.00088 26.1 4.3 15 3-17 3-17 (162)
360 PF06796 NapE: Periplasmic nit 45.1 53 0.0012 20.5 3.8 16 8-23 5-20 (56)
361 TIGR03548 mutarot_permut cycli 44.9 2.1E+02 0.0044 24.8 12.5 69 169-250 122-196 (323)
362 PF07676 PD40: WD40-like Beta 43.7 57 0.0012 18.0 4.4 18 221-238 12-29 (39)
363 PLN02193 nitrile-specifier pro 43.1 2.7E+02 0.0059 25.7 16.3 112 87-214 228-359 (470)
364 PF10647 Gmad1: Lipoprotein Lp 43.1 2E+02 0.0043 24.1 18.3 107 118-247 26-143 (253)
365 PF13807 GNVR: G-rich domain o 41.8 47 0.001 22.3 3.7 31 4-35 46-76 (82)
366 PLN02153 epithiospecifier prot 40.8 2.5E+02 0.0054 24.5 14.2 17 198-214 101-117 (341)
367 KOG1645 RING-finger-containing 40.6 1.2E+02 0.0026 27.3 6.7 52 198-249 216-267 (463)
368 KOG1034 Transcriptional repres 40.1 2.6E+02 0.0057 24.6 10.9 54 197-250 114-168 (385)
369 smart00284 OLF Olfactomedin-li 39.8 2.3E+02 0.005 23.9 15.2 116 121-251 78-211 (255)
370 KOG0295 WD40 repeat-containing 38.9 2.9E+02 0.0062 24.7 12.7 51 230-283 304-354 (406)
371 PF02897 Peptidase_S9_N: Proly 38.8 2.9E+02 0.0063 24.7 19.1 75 162-252 229-313 (414)
372 COG4880 Secreted protein conta 38.6 3.2E+02 0.0069 25.1 9.4 10 240-249 170-179 (603)
373 PHA02819 hypothetical protein; 38.0 71 0.0015 20.9 3.7 17 7-23 36-52 (71)
374 TIGR03803 Gloeo_Verruco Gloeo_ 37.5 75 0.0016 17.6 4.1 28 170-209 1-28 (34)
375 KOG0641 WD40 repeat protein [G 37.0 2.4E+02 0.0053 23.3 18.6 60 223-282 187-250 (350)
376 PHA02844 putative transmembran 36.7 77 0.0017 21.0 3.8 20 7-26 38-57 (75)
377 KOG3567 Peptidylglycine alpha- 36.2 64 0.0014 29.6 4.5 24 156-179 463-486 (501)
378 PF15416 DUF4623: Domain of un 35.2 3.2E+02 0.007 24.2 12.9 110 129-250 145-273 (442)
379 KOG2394 WD40 protein DMR-N9 [G 35.1 2.4E+02 0.0052 26.6 7.9 58 116-178 291-351 (636)
380 KOG2111 Uncharacterized conser 35.0 3.1E+02 0.0067 24.0 17.0 128 97-248 75-212 (346)
381 KOG0269 WD40 repeat-containing 33.8 4E+02 0.0087 26.3 9.4 133 93-250 106-252 (839)
382 COG3308 Predicted membrane pro 33.5 81 0.0018 23.0 3.8 40 1-44 1-41 (131)
383 KOG0269 WD40 repeat-containing 32.5 5.1E+02 0.011 25.7 10.1 87 197-286 109-200 (839)
384 PF02191 OLF: Olfactomedin-lik 32.5 3E+02 0.0066 23.1 18.4 141 76-238 69-239 (250)
385 PRK13614 lipoprotein LpqB; Pro 32.4 4.6E+02 0.01 25.2 15.9 96 83-178 389-504 (573)
386 KOG1517 Guanine nucleotide bin 32.1 6.1E+02 0.013 26.5 14.0 55 197-253 1278-1338(1387)
387 PF12894 Apc4_WD40: Anaphase-p 32.0 1.2E+02 0.0025 18.1 4.1 29 221-250 15-43 (47)
388 KOG1272 WD40-repeat-containing 31.0 1.6E+02 0.0035 27.1 6.1 94 81-178 256-353 (545)
389 KOG1034 Transcriptional repres 29.6 2.1E+02 0.0046 25.1 6.3 25 222-247 358-382 (385)
390 KOG2114 Vacuolar assembly/sort 29.3 6E+02 0.013 25.6 15.1 61 82-143 131-199 (933)
391 KOG1517 Guanine nucleotide bin 29.2 6.8E+02 0.015 26.1 13.4 148 78-248 1210-1381(1387)
392 KOG0322 G-protein beta subunit 29.2 1.1E+02 0.0024 26.0 4.5 55 79-134 254-311 (323)
393 COG1770 PtrB Protease II [Amin 29.2 5.5E+02 0.012 25.1 11.2 76 158-249 127-209 (682)
394 KOG3621 WD40 repeat-containing 28.4 2.1E+02 0.0045 27.9 6.6 20 160-179 125-145 (726)
395 KOG1063 RNA polymerase II elon 27.7 5.9E+02 0.013 24.9 11.9 129 118-265 270-408 (764)
396 KOG0267 Microtubule severing p 27.6 4.4E+02 0.0095 25.9 8.5 172 80-280 74-255 (825)
397 PF01344 Kelch_1: Kelch motif; 27.2 1.3E+02 0.0028 17.1 3.7 35 169-214 10-44 (47)
398 PF03178 CPSF_A: CPSF A subuni 27.0 3.1E+02 0.0068 23.6 7.4 98 170-287 98-197 (321)
399 COG3117 Uncharacterized protei 27.0 1.6E+02 0.0034 23.5 4.8 18 24-41 9-26 (188)
400 KOG0264 Nucleosome remodeling 26.6 5E+02 0.011 23.7 12.2 53 197-249 249-304 (422)
401 PRK13717 conjugal transfer pro 26.5 1.4E+02 0.003 22.2 4.1 26 1-26 1-26 (128)
402 COG5167 VID27 Protein involved 25.8 5.8E+02 0.013 24.2 9.6 48 198-247 583-631 (776)
403 PRK13614 lipoprotein LpqB; Pro 25.5 6.1E+02 0.013 24.4 16.5 92 78-171 344-445 (573)
404 KOG1920 IkappaB kinase complex 25.4 3.9E+02 0.0085 27.9 8.2 47 197-244 89-135 (1265)
405 PF07423 DUF1510: Protein of u 25.1 52 0.0011 27.0 2.0 19 21-39 18-36 (217)
406 PF14157 YmzC: YmzC-like prote 25.0 1.1E+02 0.0024 19.6 2.9 16 198-213 41-56 (63)
407 PF05385 Adeno_E4: Mastadenovi 24.6 1.5E+02 0.0034 21.2 3.9 30 1-30 1-30 (109)
408 PF15533 Toxin_54: Putative to 24.1 62 0.0013 20.8 1.7 15 267-281 37-51 (66)
409 PHA03283 envelope glycoprotein 24.0 1.2E+02 0.0026 28.3 4.1 25 17-41 398-422 (542)
410 PLN02153 epithiospecifier prot 23.9 4.8E+02 0.01 22.7 17.9 155 87-250 32-227 (341)
411 PLN02193 nitrile-specifier pro 23.8 5.8E+02 0.013 23.6 18.6 109 127-250 228-353 (470)
412 TIGR03547 muta_rot_YjhT mutatr 23.8 4.9E+02 0.011 22.6 15.2 17 198-214 168-184 (346)
413 KOG2114 Vacuolar assembly/sort 23.5 7.8E+02 0.017 24.9 18.5 53 197-251 146-204 (933)
414 PF05567 Neisseria_PilC: Neiss 23.3 1.7E+02 0.0036 25.8 4.9 52 138-207 182-240 (335)
415 KOG2280 Vacuolar assembly/sort 23.1 7.5E+02 0.016 24.6 12.0 73 71-146 38-113 (829)
416 TIGR03547 muta_rot_YjhT mutatr 22.8 5.1E+02 0.011 22.5 13.7 17 198-214 85-101 (346)
417 PRK12690 flgF flagellar basal 22.7 4.5E+02 0.0098 21.9 7.4 12 164-175 137-148 (238)
418 COG4590 ABC-type uncharacteriz 22.7 3.5E+02 0.0076 25.1 6.7 32 217-250 357-388 (733)
419 KOG4497 Uncharacterized conser 22.6 5.5E+02 0.012 22.8 10.7 59 215-277 89-147 (447)
420 TIGR02171 Fb_sc_TIGR02171 Fibr 22.6 8.3E+02 0.018 24.9 9.9 127 130-274 322-464 (912)
421 TIGR03726 strep_RK_lipo putati 22.4 82 0.0018 17.4 1.7 18 13-30 4-21 (34)
422 PF15390 DUF4613: Domain of un 22.2 7.2E+02 0.016 24.0 9.3 64 214-277 335-398 (671)
423 PHA03405 hypothetical protein; 22.2 56 0.0012 23.3 1.4 12 1-12 26-37 (130)
424 PRK14131 N-acetylneuraminic ac 22.0 5.6E+02 0.012 22.7 14.0 18 198-215 106-123 (376)
425 PF14779 BBS1: Ciliary BBSome 21.8 3.2E+02 0.0069 23.1 6.0 54 88-142 196-255 (257)
426 KOG1524 WD40 repeat-containing 21.6 7.1E+02 0.015 23.7 12.8 13 223-235 262-274 (737)
427 PF15492 Nbas_N: Neuroblastoma 21.3 5.3E+02 0.011 22.1 16.8 57 122-179 3-63 (282)
428 KOG1310 WD40 repeat protein [G 21.1 7.3E+02 0.016 23.7 9.5 112 116-249 51-179 (758)
429 KOG4328 WD40 protein [Function 21.1 6.7E+02 0.014 23.2 13.9 150 79-246 325-493 (498)
430 PF12275 DUF3616: Protein of u 21.1 3.1E+02 0.0068 24.2 6.0 62 221-284 3-78 (330)
431 KOG4532 WD40-like repeat conta 20.9 5.4E+02 0.012 22.1 11.2 52 197-250 139-190 (344)
432 PHA02975 hypothetical protein; 20.6 2.1E+02 0.0046 18.6 3.6 17 13-29 40-56 (69)
433 PF13088 BNR_2: BNR repeat-lik 20.5 4.9E+02 0.011 21.5 8.1 13 163-175 263-275 (275)
434 PF15176 LRR19-TM: Leucine-ric 20.4 1.5E+02 0.0034 20.9 3.2 19 24-42 23-41 (102)
435 KOG1379 Serine/threonine prote 20.4 5.9E+02 0.013 22.3 7.4 77 122-215 174-253 (330)
436 KOG3621 WD40 repeat-containing 20.2 3E+02 0.0064 26.8 6.0 88 197-286 54-148 (726)
437 PRK10626 hypothetical protein; 20.1 3.3E+02 0.0072 22.7 5.7 20 81-103 47-66 (239)
438 KOG2314 Translation initiation 20.1 7.7E+02 0.017 23.6 11.3 77 160-250 493-575 (698)
439 KOG2079 Vacuolar assembly/sort 20.1 4.4E+02 0.0096 27.3 7.3 55 92-146 104-162 (1206)
No 1
>KOG1520 consensus Predicted alkaloid synthase/Surface mucin Hemomucin [General function prediction only]
Probab=100.00 E-value=4.6e-34 Score=241.91 Aligned_cols=255 Identities=30% Similarity=0.499 Sum_probs=199.4
Q ss_pred HHHHHHHHHhccCCCcccccc-CCCCCCCCCCCCCccccceeEeccCCcCCcceEEEccCCC--EEEEecCCeEEEEec-
Q 022967 29 CLLAFTLQIFFFSPISPDLLL-LPPASSASLIPTTSDIQSVTRLGEGILNGPEDVCVDRNGV--LYTATRDGWIKRLHK- 104 (289)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~d~~g~--l~v~~~~g~i~~~~~- 104 (289)
++.+++..+....+..+.... .+..|..+...++..+...+.+..+....|+.+.+. +|+ .|.+...|.|-+.+.
T Consensus 16 ~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~E~~~fd~~~~gp~~~v~-dg~il~~~g~~~Gwv~~~~~~ 94 (376)
T KOG1520|consen 16 AVIILLYLLSGSSIAGSPDDRLFSKLPLLGKLIPNNHLTGPESLLFDPQGGGPYTGVV-DGRILKYTGNDDGWVKFADTK 94 (376)
T ss_pred HHHHhhhccCcccccCCchhcccCCCCcccccccccccCChhhheecccCCCceEEEE-CCceEEEeccCceEEEEEecc
Confidence 333334444444444333333 233333344555555555555555555545555544 334 567777777766652
Q ss_pred ----CCc-----eEEeeeecCcCccCeEEcCCC-cEEEEeCCCceEEEeC-CC-eEEEEeccCCccccCccceEEcCCCc
Q 022967 105 ----NGT-----WENWKLIGGDTLLGITTTQEN-EILVCDADKGLLKVTE-EG-VTVLASHVNGSRINLADDLIAATDGS 172 (289)
Q Consensus 105 ----~g~-----~~~~~~~~~~p~~gl~~d~~g-~l~v~~~~~~i~~~~~-~g-~~~~~~~~~~~~~~~~~~l~~~~dG~ 172 (289)
.+. .......|++|+ ||+++..| +|||||.+.|++.++. .| .+.+.....+.++...+++.++++|.
T Consensus 95 ~s~~~~~~~~~~~~~~e~~CGRPL-Gl~f~~~ggdL~VaDAYlGL~~V~p~g~~a~~l~~~~~G~~~kf~N~ldI~~~g~ 173 (376)
T KOG1520|consen 95 DSTNRSQCCDPGSFETEPLCGRPL-GIRFDKKGGDLYVADAYLGLLKVGPEGGLAELLADEAEGKPFKFLNDLDIDPEGV 173 (376)
T ss_pred ccccccccCCCcceecccccCCcc-eEEeccCCCeEEEEecceeeEEECCCCCcceeccccccCeeeeecCceeEcCCCe
Confidence 111 122234589999 99999877 9999999999999995 45 67777788888999999999999999
Q ss_pred EEEeeCCCccCccccccccceecCCCEEEEEeCCCCeEEEeeCCCCCcceEEEecCCCEEEEEeCCCCeEEEEEecCCCC
Q 022967 173 IYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANGVALSKDEDYLVVCETFKFRCLKYWLKGESK 252 (289)
Q Consensus 173 lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~p~gl~~~~d~~~l~v~~~~~~~i~~~~~~~~~~ 252 (289)
+||+|.+++|..++....++++..+|++++||+.++..+++.+++.+|||+++++|+..+.++++...+|.+|++.|++.
T Consensus 174 vyFTDSSsk~~~rd~~~a~l~g~~~GRl~~YD~~tK~~~VLld~L~F~NGlaLS~d~sfvl~~Et~~~ri~rywi~g~k~ 253 (376)
T KOG1520|consen 174 VYFTDSSSKYDRRDFVFAALEGDPTGRLFRYDPSTKVTKVLLDGLYFPNGLALSPDGSFVLVAETTTARIKRYWIKGPKA 253 (376)
T ss_pred EEEeccccccchhheEEeeecCCCccceEEecCcccchhhhhhcccccccccCCCCCCEEEEEeeccceeeeeEecCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cceeeeeccCCCCCCceeeCCCCCEEEEEeCcc
Q 022967 253 EQTEIFVENLPGGPDNIKLAPDGSFWIAILQVF 285 (289)
Q Consensus 253 ~~~~~~~~~~~~~p~~i~~d~~G~lwv~~~~g~ 285 (289)
++.+.|.+++|++||||..|++|.+||+.....
T Consensus 254 gt~EvFa~~LPG~PDNIR~~~~G~fWVal~~~~ 286 (376)
T KOG1520|consen 254 GTSEVFAEGLPGYPDNIRRDSTGHFWVALHSKR 286 (376)
T ss_pred CchhhHhhcCCCCCcceeECCCCCEEEEEeccc
Confidence 999999999999999999999999999987543
No 2
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=99.94 E-value=6.6e-25 Score=184.53 Aligned_cols=193 Identities=26% Similarity=0.443 Sum_probs=147.2
Q ss_pred cceEEEcc-CCCEEEEe-cCCeEEEEecCCceEEeeeecCcCccCeEEc-CCCcEEEEeCCCceEEEe-CCC-eEEEEec
Q 022967 79 PEDVCVDR-NGVLYTAT-RDGWIKRLHKNGTWENWKLIGGDTLLGITTT-QENEILVCDADKGLLKVT-EEG-VTVLASH 153 (289)
Q Consensus 79 p~~l~~d~-~g~l~v~~-~~g~i~~~~~~g~~~~~~~~~~~p~~gl~~d-~~g~l~v~~~~~~i~~~~-~~g-~~~~~~~ 153 (289)
||++++|+ +|.||+.+ .+++|++++.++.......... |. |++++ ++|.+|+++. .++..+| .+| ++.+...
T Consensus 2 ~Egp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~~~~~~-~~-G~~~~~~~g~l~v~~~-~~~~~~d~~~g~~~~~~~~ 78 (246)
T PF08450_consen 2 GEGPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEVIDLPG-PN-GMAFDRPDGRLYVADS-GGIAVVDPDTGKVTVLADL 78 (246)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEESSS-EE-EEEEECTTSEEEEEET-TCEEEEETTTTEEEEEEEE
T ss_pred CcceEEECCCCEEEEEEcCCCEEEEEECCCCeEEEEecCC-Cc-eEEEEccCCEEEEEEc-CceEEEecCCCcEEEEeec
Confidence 68899997 89999655 7899999996555443333223 88 99999 7899999996 6677778 778 7777665
Q ss_pred cCCc-cccCccceEEcCCCcEEEeeCCCccCccccccccceecCCCEEEEEeCCCCeEEEeeCCCCCcceEEEecCCCEE
Q 022967 154 VNGS-RINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANGVALSKDEDYL 232 (289)
Q Consensus 154 ~~~~-~~~~~~~l~~~~dG~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~p~gl~~~~d~~~l 232 (289)
..+. ++..+++++++++|+|||+++..... .....|+|++++++ ++...+..++..||||++++|++.|
T Consensus 79 ~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~---------~~~~~g~v~~~~~~-~~~~~~~~~~~~pNGi~~s~dg~~l 148 (246)
T PF08450_consen 79 PDGGVPFNRPNDVAVDPDGNLYVTDSGGGGA---------SGIDPGSVYRIDPD-GKVTVVADGLGFPNGIAFSPDGKTL 148 (246)
T ss_dssp ETTCSCTEEEEEEEE-TTS-EEEEEECCBCT---------TCGGSEEEEEEETT-SEEEEEEEEESSEEEEEEETTSSEE
T ss_pred cCCCcccCCCceEEEcCCCCEEEEecCCCcc---------ccccccceEEECCC-CeEEEEecCcccccceEECCcchhe
Confidence 4343 67899999999999999998752110 00011789999998 8888888889999999999999999
Q ss_pred EEEeCCCCeEEEEEecCC--CCcceeeeecc--CCCCCCceeeCCCCCEEEEEeCc
Q 022967 233 VVCETFKFRCLKYWLKGE--SKEQTEIFVEN--LPGGPDNIKLAPDGSFWIAILQV 284 (289)
Q Consensus 233 ~v~~~~~~~i~~~~~~~~--~~~~~~~~~~~--~~~~p~~i~~d~~G~lwv~~~~g 284 (289)
|++++..++|++|+++.. .+...+.+.+. ..+.|+|+++|++|+|||+.+.+
T Consensus 149 yv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~ 204 (246)
T PF08450_consen 149 YVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGG 204 (246)
T ss_dssp EEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETT
T ss_pred eecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCC
Confidence 999999999999999743 24445555432 22469999999999999998754
No 3
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=99.92 E-value=2.4e-23 Score=177.82 Aligned_cols=193 Identities=28% Similarity=0.443 Sum_probs=147.7
Q ss_pred EEcc-CCCEE-EEecCCeEEEEec-CCceEEeeeecCcCccCeEEcCCCcEEEEeCCCceEEEe-CCC-e-EEEEeccCC
Q 022967 83 CVDR-NGVLY-TATRDGWIKRLHK-NGTWENWKLIGGDTLLGITTTQENEILVCDADKGLLKVT-EEG-V-TVLASHVNG 156 (289)
Q Consensus 83 ~~d~-~g~l~-v~~~~g~i~~~~~-~g~~~~~~~~~~~p~~gl~~d~~g~l~v~~~~~~i~~~~-~~g-~-~~~~~~~~~ 156 (289)
..++ .+.|| ++...++|+++++ +|+...+......+. ++.++..|.|++++ +++++++ +.+ . +.+.....+
T Consensus 31 ~w~~~~~~L~w~DI~~~~i~r~~~~~g~~~~~~~p~~~~~-~~~~d~~g~Lv~~~--~g~~~~~~~~~~~~t~~~~~~~~ 107 (307)
T COG3386 31 VWDPDRGALLWVDILGGRIHRLDPETGKKRVFPSPGGFSS-GALIDAGGRLIACE--HGVRLLDPDTGGKITLLAEPEDG 107 (307)
T ss_pred cCcCCCCEEEEEeCCCCeEEEecCCcCceEEEECCCCccc-ceeecCCCeEEEEc--cccEEEeccCCceeEEeccccCC
Confidence 4444 44455 7778999999995 688888888777788 99999888888887 4566665 555 4 777777777
Q ss_pred ccccCccceEEcCCCcEEEeeCCCccCccccccccceecCCCEEEEEeCCCCeEEEeeCCCCCcceEEEecCCCEEEEEe
Q 022967 157 SRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANGVALSKDEDYLVVCE 236 (289)
Q Consensus 157 ~~~~~~~~l~~~~dG~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~p~gl~~~~d~~~l~v~~ 236 (289)
.+.+.+|+..++++|++||+++.. .+ ....+....|.||+++|.++..+.+...+..||||+||||++.||++|
T Consensus 108 ~~~~r~ND~~v~pdG~~wfgt~~~----~~--~~~~~~~~~G~lyr~~p~g~~~~l~~~~~~~~NGla~SpDg~tly~aD 181 (307)
T COG3386 108 LPLNRPNDGVVDPDGRIWFGDMGY----FD--LGKSEERPTGSLYRVDPDGGVVRLLDDDLTIPNGLAFSPDGKTLYVAD 181 (307)
T ss_pred CCcCCCCceeEcCCCCEEEeCCCc----cc--cCccccCCcceEEEEcCCCCEEEeecCcEEecCceEECCCCCEEEEEe
Confidence 788999999999999999999872 11 223344567899999997555555555599999999999999999999
Q ss_pred CCCCeEEEEEec---CCCCcce-eeeeccCCCCCCceeeCCCCCEEEEEeCc
Q 022967 237 TFKFRCLKYWLK---GESKEQT-EIFVENLPGGPDNIKLAPDGSFWIAILQV 284 (289)
Q Consensus 237 ~~~~~i~~~~~~---~~~~~~~-~~~~~~~~~~p~~i~~d~~G~lwv~~~~g 284 (289)
+..++|++|+.+ +...... ..+.+..++.|||+++|++|++|++...+
T Consensus 182 T~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~ 233 (307)
T COG3386 182 TPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWG 233 (307)
T ss_pred CCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccC
Confidence 999999999987 3222222 33444556899999999999999655443
No 4
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=99.78 E-value=5.9e-19 Score=121.85 Aligned_cols=88 Identities=51% Similarity=1.009 Sum_probs=74.1
Q ss_pred cceEEcCC-CcEEEeeCCCccCccccccccceecCCCEEEEEeCCCCeEEEeeCCCCCcceEEEecCCCEEEEEeCCCCe
Q 022967 163 DDLIAATD-GSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANGVALSKDEDYLVVCETFKFR 241 (289)
Q Consensus 163 ~~l~~~~d-G~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~p~gl~~~~d~~~l~v~~~~~~~ 241 (289)
++++++++ |.|||++.+++|...++..+++|+.++|+|++|||.+++.+++.+++.+|||+++++|++.++|+|+...|
T Consensus 1 ndldv~~~~g~vYfTdsS~~~~~~~~~~~~le~~~~GRll~ydp~t~~~~vl~~~L~fpNGVals~d~~~vlv~Et~~~R 80 (89)
T PF03088_consen 1 NDLDVDQDTGTVYFTDSSSRYDRRDWVYDLLEGRPTGRLLRYDPSTKETTVLLDGLYFPNGVALSPDESFVLVAETGRYR 80 (89)
T ss_dssp -EEEE-TTT--EEEEES-SS--TTGHHHHHHHT---EEEEEEETTTTEEEEEEEEESSEEEEEE-TTSSEEEEEEGGGTE
T ss_pred CceeEecCCCEEEEEeCccccCccceeeeeecCCCCcCEEEEECCCCeEEEehhCCCccCeEEEcCCCCEEEEEeccCce
Confidence 57899998 99999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEecCC
Q 022967 242 CLKYWLKGE 250 (289)
Q Consensus 242 i~~~~~~~~ 250 (289)
|.||+++|+
T Consensus 81 i~rywl~Gp 89 (89)
T PF03088_consen 81 ILRYWLKGP 89 (89)
T ss_dssp EEEEESSST
T ss_pred EEEEEEeCC
Confidence 999999874
No 5
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.74 E-value=4.8e-16 Score=153.38 Aligned_cols=192 Identities=19% Similarity=0.217 Sum_probs=138.8
Q ss_pred CcCCcceEEEcc-CCCEEEEe-cCCeEEEEecCCceEEeeee---------------cCcCccCeEEcCCCc-EEEEeCC
Q 022967 75 ILNGPEDVCVDR-NGVLYTAT-RDGWIKRLHKNGTWENWKLI---------------GGDTLLGITTTQENE-ILVCDAD 136 (289)
Q Consensus 75 ~~~~p~~l~~d~-~g~l~v~~-~~g~i~~~~~~g~~~~~~~~---------------~~~p~~gl~~d~~g~-l~v~~~~ 136 (289)
++..|.++++|+ +|+||+++ .+++|.+++.+|........ ...|. ||+++++++ |||+|.+
T Consensus 566 ~l~~P~gvavd~~~g~lyVaDs~n~rI~v~d~~G~~i~~ig~~g~~G~~dG~~~~a~f~~P~-GIavd~~gn~LYVaDt~ 644 (1057)
T PLN02919 566 PLKFPGKLAIDLLNNRLFISDSNHNRIVVTDLDGNFIVQIGSTGEEGLRDGSFEDATFNRPQ-GLAYNAKKNLLYVADTE 644 (1057)
T ss_pred cCCCCceEEEECCCCeEEEEECCCCeEEEEeCCCCEEEEEccCCCcCCCCCchhccccCCCc-EEEEeCCCCEEEEEeCC
Confidence 478899999997 68899877 67899999988875433221 13588 999998765 8999976
Q ss_pred -CceEEEe-CCC-eEEEEec------cCC------ccccCccceEEcC-CCcEEEeeCCCccCccccccccceecCCCEE
Q 022967 137 -KGLLKVT-EEG-VTVLASH------VNG------SRINLADDLIAAT-DGSIYFSVASTKFGLHNWGLDLLEAKPHGKL 200 (289)
Q Consensus 137 -~~i~~~~-~~g-~~~~~~~------~~~------~~~~~~~~l~~~~-dG~lyv~~~~~~~~~~~~~~~~~~~~~~g~i 200 (289)
+.|.+++ .++ ++.+... ..+ ..++.|.++++++ +|.+||++.. +++|
T Consensus 645 n~~Ir~id~~~~~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~-----------------~~~I 707 (1057)
T PLN02919 645 NHALREIDFVNETVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAG-----------------QHQI 707 (1057)
T ss_pred CceEEEEecCCCEEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECC-----------------CCeE
Confidence 4577788 667 6666432 011 1256889999999 6899999864 4678
Q ss_pred EEEeCCCCeEEEee---------------CCCCCcceEEEecCCCEEEEEeCCCCeEEEEEecCCCCcce----------
Q 022967 201 LKYDPSLNETSILL---------------DSLFFANGVALSKDEDYLVVCETFKFRCLKYWLKGESKEQT---------- 255 (289)
Q Consensus 201 ~~~~~~~~~~~~~~---------------~~~~~p~gl~~~~d~~~l~v~~~~~~~i~~~~~~~~~~~~~---------- 255 (289)
+++|..++....+. ..+..|+||++++++++|||++..+++|++||+++......
T Consensus 708 ~v~d~~~g~v~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~ 787 (1057)
T PLN02919 708 WEYNISDGVTRVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDN 787 (1057)
T ss_pred EEEECCCCeEEEEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcc
Confidence 88887766554432 12567999999999999999999999999999864321000
Q ss_pred -eeeec-------cCCCCCCceeeCCCCCEEEEEeCc
Q 022967 256 -EIFVE-------NLPGGPDNIKLAPDGSFWIAILQV 284 (289)
Q Consensus 256 -~~~~~-------~~~~~p~~i~~d~~G~lwv~~~~g 284 (289)
..+.+ .....|.++++|.+|++||+....
T Consensus 788 l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N 824 (1057)
T PLN02919 788 LFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYN 824 (1057)
T ss_pred cccccCCCCchhhhhccCCceeeEeCCCcEEEEECCC
Confidence 00100 011368999999999999998654
No 6
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=99.71 E-value=1.4e-15 Score=123.63 Aligned_cols=193 Identities=17% Similarity=0.169 Sum_probs=141.6
Q ss_pred EeccCCcCCcceEEEccCCCEEEEe-cCCeEEEEe-cCCceEEeeeec-CcCccCeEEcCCCcEEEEeCCCceEEEe-CC
Q 022967 70 RLGEGILNGPEDVCVDRNGVLYTAT-RDGWIKRLH-KNGTWENWKLIG-GDTLLGITTTQENEILVCDADKGLLKVT-EE 145 (289)
Q Consensus 70 ~~~~~~~~~p~~l~~d~~g~l~v~~-~~g~i~~~~-~~g~~~~~~~~~-~~p~~gl~~d~~g~l~v~~~~~~i~~~~-~~ 145 (289)
..+...-..|..++.++||.+|++. ..+.|-++| .+|+.+.+.... ..|+ +|.+++||..||+|.+..|.|++ ++
T Consensus 55 ~fpvp~G~ap~dvapapdG~VWft~qg~gaiGhLdP~tGev~~ypLg~Ga~Ph-giv~gpdg~~Witd~~~aI~R~dpkt 133 (353)
T COG4257 55 EFPVPNGSAPFDVAPAPDGAVWFTAQGTGAIGHLDPATGEVETYPLGSGASPH-GIVVGPDGSAWITDTGLAIGRLDPKT 133 (353)
T ss_pred eeccCCCCCccccccCCCCceEEecCccccceecCCCCCceEEEecCCCCCCc-eEEECCCCCeeEecCcceeEEecCcc
Confidence 3333334679999999999999554 678888999 689988886554 5799 99999999999999888999999 66
Q ss_pred C-eEEEEeccCCccccCccceEEcCCCcEEEeeCCCccCccccccccceecCCCEEEEEeCCCCeEEEee-CCCCCcceE
Q 022967 146 G-VTVLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILL-DSLFFANGV 223 (289)
Q Consensus 146 g-~~~~~~~~~~~~~~~~~~l~~~~dG~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~-~~~~~p~gl 223 (289)
+ ++.+..... ......+...+|++|+|||+... |--=|+||..+.++++. .....|+||
T Consensus 134 ~evt~f~lp~~-~a~~nlet~vfD~~G~lWFt~q~------------------G~yGrLdPa~~~i~vfpaPqG~gpyGi 194 (353)
T COG4257 134 LEVTRFPLPLE-HADANLETAVFDPWGNLWFTGQI------------------GAYGRLDPARNVISVFPAPQGGGPYGI 194 (353)
T ss_pred cceEEeecccc-cCCCcccceeeCCCccEEEeecc------------------ccceecCcccCceeeeccCCCCCCcce
Confidence 6 766643211 11123456799999999999643 22227888877777764 345679999
Q ss_pred EEecCCCEEEEEeCCCCeEEEEEecCCCCcceeeeec--cCCCCCCceeeCCCCCEEEEEeCccc
Q 022967 224 ALSKDEDYLVVCETFKFRCLKYWLKGESKEQTEIFVE--NLPGGPDNIKLAPDGSFWIAILQVFI 286 (289)
Q Consensus 224 ~~~~d~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~--~~~~~p~~i~~d~~G~lwv~~~~g~i 286 (289)
+..|||. +|+++...+-|.++|.... ..+++.. .+....+.+-.|..|.+|++++..+-
T Consensus 195 ~atpdGs-vwyaslagnaiaridp~~~---~aev~p~P~~~~~gsRriwsdpig~~wittwg~g~ 255 (353)
T COG4257 195 CATPDGS-VWYASLAGNAIARIDPFAG---HAEVVPQPNALKAGSRRIWSDPIGRAWITTWGTGS 255 (353)
T ss_pred EECCCCc-EEEEeccccceEEcccccC---CcceecCCCcccccccccccCccCcEEEeccCCce
Confidence 9999999 9999888889999986532 2233321 11233456888999999999987653
No 7
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.70 E-value=3.4e-15 Score=147.45 Aligned_cols=191 Identities=14% Similarity=0.220 Sum_probs=135.1
Q ss_pred cCCcceEEEccCCC-EEEEe-cCCeEEEEe-cCCceEEeeee-----------------cCcCccCeEEcC-CCcEEEEe
Q 022967 76 LNGPEDVCVDRNGV-LYTAT-RDGWIKRLH-KNGTWENWKLI-----------------GGDTLLGITTTQ-ENEILVCD 134 (289)
Q Consensus 76 ~~~p~~l~~d~~g~-l~v~~-~~g~i~~~~-~~g~~~~~~~~-----------------~~~p~~gl~~d~-~g~l~v~~ 134 (289)
+..|.+|++|++|+ ||+++ .+++|.+++ .++.+..+... ...|. ++++++ +|.+||++
T Consensus 623 f~~P~GIavd~~gn~LYVaDt~n~~Ir~id~~~~~V~tlag~G~~g~~~~gg~~~~~~~ln~P~-gVa~dp~~g~LyVad 701 (1057)
T PLN02919 623 FNRPQGLAYNAKKNLLYVADTENHALREIDFVNETVRTLAGNGTKGSDYQGGKKGTSQVLNSPW-DVCFEPVNEKVYIAM 701 (1057)
T ss_pred cCCCcEEEEeCCCCEEEEEeCCCceEEEEecCCCEEEEEeccCcccCCCCCChhhhHhhcCCCe-EEEEecCCCeEEEEE
Confidence 56799999998665 89877 567888888 45555544321 23578 999998 67899998
Q ss_pred CC-CceEEEe-CCC-eEEEEec-----cC-----CccccCccceEEcCCCc-EEEeeCCCccCccccccccceecCCCEE
Q 022967 135 AD-KGLLKVT-EEG-VTVLASH-----VN-----GSRINLADDLIAATDGS-IYFSVASTKFGLHNWGLDLLEAKPHGKL 200 (289)
Q Consensus 135 ~~-~~i~~~~-~~g-~~~~~~~-----~~-----~~~~~~~~~l~~~~dG~-lyv~~~~~~~~~~~~~~~~~~~~~~g~i 200 (289)
.+ +.|++++ .+| +..+... .. ...+..|.+|++++||. |||++.. +++|
T Consensus 702 ~~~~~I~v~d~~~g~v~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~-----------------n~~I 764 (1057)
T PLN02919 702 AGQHQIWEYNISDGVTRVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSE-----------------SSSI 764 (1057)
T ss_pred CCCCeEEEEECCCCeEEEEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECC-----------------CCeE
Confidence 76 5688888 566 5544321 00 12356799999999986 9999864 4688
Q ss_pred EEEeCCCCeEEEeeC----------------------CCCCcceEEEecCCCEEEEEeCCCCeEEEEEecCCCCcceee-
Q 022967 201 LKYDPSLNETSILLD----------------------SLFFANGVALSKDEDYLVVCETFKFRCLKYWLKGESKEQTEI- 257 (289)
Q Consensus 201 ~~~~~~~~~~~~~~~----------------------~~~~p~gl~~~~d~~~l~v~~~~~~~i~~~~~~~~~~~~~~~- 257 (289)
.++|++++....+.. .+..|.|++++++|+ +||+++.+++|.+||.++........
T Consensus 765 rv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~-LYVADs~N~rIrviD~~tg~v~tiaG~ 843 (1057)
T PLN02919 765 RALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQ-IYVADSYNHKIKKLDPATKRVTTLAGT 843 (1057)
T ss_pred EEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCc-EEEEECCCCEEEEEECCCCeEEEEecc
Confidence 899887655433211 145789999999998 99999999999999987643221110
Q ss_pred ----eec-----cCCCCCCceeeCCCCCEEEEEeCcc
Q 022967 258 ----FVE-----NLPGGPDNIKLAPDGSFWIAILQVF 285 (289)
Q Consensus 258 ----~~~-----~~~~~p~~i~~d~~G~lwv~~~~g~ 285 (289)
+.+ .....|.+|++|.+|++||+....+
T Consensus 844 G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn 880 (1057)
T PLN02919 844 GKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNS 880 (1057)
T ss_pred CCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCC
Confidence 000 1113699999999999999986543
No 8
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=99.69 E-value=4.5e-15 Score=131.73 Aligned_cols=172 Identities=20% Similarity=0.265 Sum_probs=121.9
Q ss_pred eEeccC-CcCCcceEEEccCCCEEEEec------------C-CeEEEEe-c--CCc---eEEeeeecCcCccCeEEcCCC
Q 022967 69 TRLGEG-ILNGPEDVCVDRNGVLYTATR------------D-GWIKRLH-K--NGT---WENWKLIGGDTLLGITTTQEN 128 (289)
Q Consensus 69 ~~~~~~-~~~~p~~l~~d~~g~l~v~~~------------~-g~i~~~~-~--~g~---~~~~~~~~~~p~~gl~~d~~g 128 (289)
+.+++. .+..|+.|++|++|+|||++. . ++|++++ . ||+ .+.+......|. ||++.++|
T Consensus 5 ~l~A~~p~~~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~-Gi~~~~~G 83 (367)
T TIGR02604 5 TLFAAEPLLRNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVT-GLAVAVGG 83 (367)
T ss_pred EEEECCCccCCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCcc-ceeEecCC
Confidence 344433 378999999999999998862 2 3899987 3 565 355666677899 99999888
Q ss_pred cEEEEeCCCceEEEe-C--C----C-eEEEEeccCCc---cccCccceEEcCCCcEEEeeCCCccCcccc--ccccceec
Q 022967 129 EILVCDADKGLLKVT-E--E----G-VTVLASHVNGS---RINLADDLIAATDGSIYFSVASTKFGLHNW--GLDLLEAK 195 (289)
Q Consensus 129 ~l~v~~~~~~i~~~~-~--~----g-~~~~~~~~~~~---~~~~~~~l~~~~dG~lyv~~~~~~~~~~~~--~~~~~~~~ 195 (289)
|||++. ..|+++. . + + .+++....... ..+.++++++++||.|||+.+......... .....+..
T Consensus 84 -lyV~~~-~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~ 161 (367)
T TIGR02604 84 -VYVATP-PDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQG 161 (367)
T ss_pred -EEEeCC-CeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccc
Confidence 999975 5688884 2 2 2 34555544332 356789999999999999987421100000 00111223
Q ss_pred CCCEEEEEeCCCCeEEEeeCCCCCcceEEEecCCCEEEEEeCCCCeEEE
Q 022967 196 PHGKLLKYDPSLNETSILLDSLFFANGVALSKDEDYLVVCETFKFRCLK 244 (289)
Q Consensus 196 ~~g~i~~~~~~~~~~~~~~~~~~~p~gl~~~~d~~~l~v~~~~~~~i~~ 244 (289)
..+.|++++|++++++.++.++++|+|++|+++|+ +|++|.......+
T Consensus 162 ~~g~i~r~~pdg~~~e~~a~G~rnp~Gl~~d~~G~-l~~tdn~~~~~~~ 209 (367)
T TIGR02604 162 LGGGLFRYNPDGGKLRVVAHGFQNPYGHSVDSWGD-VFFCDNDDPPLCR 209 (367)
T ss_pred cCceEEEEecCCCeEEEEecCcCCCccceECCCCC-EEEEccCCCceeE
Confidence 35789999999999999999999999999999887 8999875544443
No 9
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=99.64 E-value=5e-14 Score=114.63 Aligned_cols=198 Identities=11% Similarity=0.074 Sum_probs=140.7
Q ss_pred cceeEeccCCcCCcceEEEccCCCEEEEecCCeEEEEe-cCCceEEeeeecCc----CccCeEEcCCCcEEEEeCCCceE
Q 022967 66 QSVTRLGEGILNGPEDVCVDRNGVLYTATRDGWIKRLH-KNGTWENWKLIGGD----TLLGITTTQENEILVCDADKGLL 140 (289)
Q Consensus 66 ~~~~~~~~~~~~~p~~l~~d~~g~l~v~~~~g~i~~~~-~~g~~~~~~~~~~~----p~~gl~~d~~g~l~v~~~~~~i~ 140 (289)
.++++.+.+.-..|.+|.+++||..|+.+....|.|++ +++.+++|.....+ -. ...||+.|+||++....---
T Consensus 93 Gev~~ypLg~Ga~Phgiv~gpdg~~Witd~~~aI~R~dpkt~evt~f~lp~~~a~~nle-t~vfD~~G~lWFt~q~G~yG 171 (353)
T COG4257 93 GEVETYPLGSGASPHGIVVGPDGSAWITDTGLAIGRLDPKTLEVTRFPLPLEHADANLE-TAVFDPWGNLWFTGQIGAYG 171 (353)
T ss_pred CceEEEecCCCCCCceEEECCCCCeeEecCcceeEEecCcccceEEeecccccCCCccc-ceeeCCCccEEEeeccccce
Confidence 35566666666789999999999999877655899999 57888888654433 23 67799999999997532234
Q ss_pred EEe-CCC-eEEEEeccCCccccCccceEEcCCCcEEEeeCCCccCccccccccceecCCCEEEEEeCCCCeEEEeeC--C
Q 022967 141 KVT-EEG-VTVLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLD--S 216 (289)
Q Consensus 141 ~~~-~~g-~~~~~~~~~~~~~~~~~~l~~~~dG~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~--~ 216 (289)
|+| ..+ ++++... .-..+++|++.|||.+|++.-. ...|-++|+..+..+++.. .
T Consensus 172 rLdPa~~~i~vfpaP----qG~gpyGi~atpdGsvwyasla-----------------gnaiaridp~~~~aev~p~P~~ 230 (353)
T COG4257 172 RLDPARNVISVFPAP----QGGGPYGICATPDGSVWYASLA-----------------GNAIARIDPFAGHAEVVPQPNA 230 (353)
T ss_pred ecCcccCceeeeccC----CCCCCcceEECCCCcEEEEecc-----------------ccceEEcccccCCcceecCCCc
Confidence 778 556 7766332 2347899999999999998542 2468899998775555432 1
Q ss_pred -CCCcceEEEecCCCEEEEEeCCCCeEEEEEecCCCCcceeeeeccCCCCCCceeeCCCCCEEEEEeCccccC
Q 022967 217 -LFFANGVALSKDEDYLVVCETFKFRCLKYWLKGESKEQTEIFVENLPGGPDNIKLAPDGSFWIAILQVFISN 288 (289)
Q Consensus 217 -~~~p~gl~~~~d~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~lwv~~~~g~i~~ 288 (289)
-....++-.++.++ +|+++.++.++.+||..... ..+--.......|..+.+|+.|++|....+.+..+
T Consensus 231 ~~~gsRriwsdpig~-~wittwg~g~l~rfdPs~~s--W~eypLPgs~arpys~rVD~~grVW~sea~agai~ 300 (353)
T COG4257 231 LKAGSRRIWSDPIGR-AWITTWGTGSLHRFDPSVTS--WIEYPLPGSKARPYSMRVDRHGRVWLSEADAGAIG 300 (353)
T ss_pred ccccccccccCccCc-EEEeccCCceeeEeCccccc--ceeeeCCCCCCCcceeeeccCCcEEeeccccCcee
Confidence 12223444566776 99999999999999976543 22222223334688899999999999887766544
No 10
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=99.62 E-value=5.7e-14 Score=118.06 Aligned_cols=176 Identities=20% Similarity=0.384 Sum_probs=124.6
Q ss_pred CcceEEEc-cCCCEEEEecCCeEEEEe-cCCceEEeeee------cCcCccCeEEcCCCcEEEEeCCC---------ceE
Q 022967 78 GPEDVCVD-RNGVLYTATRDGWIKRLH-KNGTWENWKLI------GGDTLLGITTTQENEILVCDADK---------GLL 140 (289)
Q Consensus 78 ~p~~l~~d-~~g~l~v~~~~g~i~~~~-~~g~~~~~~~~------~~~p~~gl~~d~~g~l~v~~~~~---------~i~ 140 (289)
.|.+++++ ++|.+|++...+ +.+++ .+|+++.+... ...|+ ++++|++|+||+++... +++
T Consensus 41 ~~~G~~~~~~~g~l~v~~~~~-~~~~d~~~g~~~~~~~~~~~~~~~~~~N-D~~vd~~G~ly~t~~~~~~~~~~~~g~v~ 118 (246)
T PF08450_consen 41 GPNGMAFDRPDGRLYVADSGG-IAVVDPDTGKVTVLADLPDGGVPFNRPN-DVAVDPDGNLYVTDSGGGGASGIDPGSVY 118 (246)
T ss_dssp SEEEEEEECTTSEEEEEETTC-EEEEETTTTEEEEEEEEETTCSCTEEEE-EEEE-TTS-EEEEEECCBCTTCGGSEEEE
T ss_pred CCceEEEEccCCEEEEEEcCc-eEEEecCCCcEEEEeeccCCCcccCCCc-eEEEcCCCCEEEEecCCCccccccccceE
Confidence 39999999 799999988755 55558 66777666543 23577 99999999999997532 389
Q ss_pred EEeCCC-eEEEEeccCCccccCccceEEcCCCc-EEEeeCCCccCccccccccceecCCCEEEEEeCC--CCeE---EEe
Q 022967 141 KVTEEG-VTVLASHVNGSRINLADDLIAATDGS-IYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPS--LNET---SIL 213 (289)
Q Consensus 141 ~~~~~g-~~~~~~~~~~~~~~~~~~l~~~~dG~-lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~--~~~~---~~~ 213 (289)
+++.++ .+.+... +..|++|++++||+ ||+++.. .++|++++.+ ++++ +.+
T Consensus 119 ~~~~~~~~~~~~~~-----~~~pNGi~~s~dg~~lyv~ds~-----------------~~~i~~~~~~~~~~~~~~~~~~ 176 (246)
T PF08450_consen 119 RIDPDGKVTVVADG-----LGFPNGIAFSPDGKTLYVADSF-----------------NGRIWRFDLDADGGELSNRRVF 176 (246)
T ss_dssp EEETTSEEEEEEEE-----ESSEEEEEEETTSSEEEEEETT-----------------TTEEEEEEEETTTCCEEEEEEE
T ss_pred EECCCCeEEEEecC-----cccccceEECCcchheeecccc-----------------cceeEEEeccccccceeeeeeE
Confidence 999667 6655443 46799999999995 8999865 4789998875 3312 223
Q ss_pred e---CCCCCcceEEEecCCCEEEEEeCCCCeEEEEEecCCCCcceeeeeccCCCCCCceeeC-CC-CCEEEEEe
Q 022967 214 L---DSLFFANGVALSKDEDYLVVCETFKFRCLKYWLKGESKEQTEIFVENLPGGPDNIKLA-PD-GSFWIAIL 282 (289)
Q Consensus 214 ~---~~~~~p~gl~~~~d~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d-~~-G~lwv~~~ 282 (289)
. .....|.|++++.+|+ ||++....++|++|+.+|..+...+ . . ...|.++++. ++ +.|||.+.
T Consensus 177 ~~~~~~~g~pDG~~vD~~G~-l~va~~~~~~I~~~~p~G~~~~~i~--~-p-~~~~t~~~fgg~~~~~L~vTta 245 (246)
T PF08450_consen 177 IDFPGGPGYPDGLAVDSDGN-LWVADWGGGRIVVFDPDGKLLREIE--L-P-VPRPTNCAFGGPDGKTLYVTTA 245 (246)
T ss_dssp EE-SSSSCEEEEEEEBTTS--EEEEEETTTEEEEEETTSCEEEEEE----S-SSSEEEEEEESTTSSEEEEEEB
T ss_pred EEcCCCCcCCCcceEcCCCC-EEEEEcCCCEEEEECCCccEEEEEc--C-C-CCCEEEEEEECCCCCEEEEEeC
Confidence 2 2223599999999997 9999999999999998864222111 1 2 1478999983 33 58999874
No 11
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=99.57 E-value=2e-13 Score=119.41 Aligned_cols=159 Identities=23% Similarity=0.307 Sum_probs=102.3
Q ss_pred cCCcceEEEccCCCEEEEecCCeEEEEecCCce-EEeeee-------cCcCccCeEEcCC----CcEEEEeCC-------
Q 022967 76 LNGPEDVCVDRNGVLYTATRDGWIKRLHKNGTW-ENWKLI-------GGDTLLGITTTQE----NEILVCDAD------- 136 (289)
Q Consensus 76 ~~~p~~l~~d~~g~l~v~~~~g~i~~~~~~g~~-~~~~~~-------~~~p~~gl~~d~~----g~l~v~~~~------- 136 (289)
|..|++|++.|+|+||++...|+|++++.+|.. ..+... ....+ |++++++ +.||++...
T Consensus 1 L~~P~~~a~~pdG~l~v~e~~G~i~~~~~~g~~~~~v~~~~~v~~~~~~gll-gia~~p~f~~n~~lYv~~t~~~~~~~~ 79 (331)
T PF07995_consen 1 LNNPRSMAFLPDGRLLVAERSGRIWVVDKDGSLKTPVADLPEVFADGERGLL-GIAFHPDFASNGYLYVYYTNADEDGGD 79 (331)
T ss_dssp ESSEEEEEEETTSCEEEEETTTEEEEEETTTEECEEEEE-TTTBTSTTBSEE-EEEE-TTCCCC-EEEEEEEEE-TSSSS
T ss_pred CCCceEEEEeCCCcEEEEeCCceEEEEeCCCcCcceecccccccccccCCcc-cceeccccCCCCEEEEEEEcccCCCCC
Confidence 467999999999999999999999999977765 322221 23456 8999984 789987542
Q ss_pred --CceEEEe--CC-C----eEEEEeccCC--ccccCccceEEcCCCcEEEeeCCCccCccccccccceecCCCEEEEEeC
Q 022967 137 --KGLLKVT--EE-G----VTVLASHVNG--SRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDP 205 (289)
Q Consensus 137 --~~i~~~~--~~-g----~~~~~~~~~~--~~~~~~~~l~~~~dG~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~ 205 (289)
..|.|+. .+ . .+.+....+. ...+....|+++|||.|||+.+.... ....++. ....|.|+|+++
T Consensus 80 ~~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~~~~--~~~~~~~--~~~~G~ilri~~ 155 (331)
T PF07995_consen 80 NDNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGDGGN--DDNAQDP--NSLRGKILRIDP 155 (331)
T ss_dssp EEEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-TTT--GGGGCST--TSSTTEEEEEET
T ss_pred cceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCCCCC--ccccccc--ccccceEEEecc
Confidence 2577776 22 1 2333333222 34566778999999999999876221 1111111 223578999998
Q ss_pred CCC-------------eEEEeeCCCCCcceEEEecCCCEEEEEeCCC
Q 022967 206 SLN-------------ETSILLDSLFFANGVALSKDEDYLVVCETFK 239 (289)
Q Consensus 206 ~~~-------------~~~~~~~~~~~p~gl~~~~d~~~l~v~~~~~ 239 (289)
++. ..++++.++++|.+++|+|....||++|.+.
T Consensus 156 dG~~p~dnP~~~~~~~~~~i~A~GlRN~~~~~~d~~tg~l~~~d~G~ 202 (331)
T PF07995_consen 156 DGSIPADNPFVGDDGADSEIYAYGLRNPFGLAFDPNTGRLWAADNGP 202 (331)
T ss_dssp TSSB-TTSTTTTSTTSTTTEEEE--SEEEEEEEETTTTEEEEEEE-S
T ss_pred cCcCCCCCccccCCCceEEEEEeCCCccccEEEECCCCcEEEEccCC
Confidence 754 3466788899999999998855588888654
No 12
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=99.53 E-value=7.6e-13 Score=105.48 Aligned_cols=190 Identities=17% Similarity=0.257 Sum_probs=119.4
Q ss_pred CCC-EEEEecCCeEEEEecCCceEEeeeecCcCccCeEEcCCC--cEEEEeCCCceEEEeCCC----eEEEEe---ccCC
Q 022967 87 NGV-LYTATRDGWIKRLHKNGTWENWKLIGGDTLLGITTTQEN--EILVCDADKGLLKVTEEG----VTVLAS---HVNG 156 (289)
Q Consensus 87 ~g~-l~v~~~~g~i~~~~~~g~~~~~~~~~~~p~~gl~~d~~g--~l~v~~~~~~i~~~~~~g----~~~~~~---~~~~ 156 (289)
.+. +||....+.|+|+|...+...-....+.|..|..+--.| ..|++..+.+....+-+| ..++.. ..+.
T Consensus 26 ~~sLl~VDi~ag~v~r~D~~qn~v~ra~ie~p~~ag~ilpv~~~~q~~~v~~G~kf~i~nwd~~~~~a~v~~t~~ev~~d 105 (310)
T KOG4499|consen 26 RQSLLYVDIEAGEVHRYDIEQNKVYRAKIEGPPSAGFILPVEGGPQEFAVGCGSKFVIVNWDGVSESAKVYRTLFEVQPD 105 (310)
T ss_pred cceEEEEEeccCceehhhhhhhheEEEEEecCcceeEEEEecCCCceEEEeecceEEEEEcccccceeeeeeeccccCch
Confidence 345 558888999999983222111122223333355554232 355555454443333222 222211 2223
Q ss_pred ccccCccceEEcCCCcEEEeeCCCccCccccccccceecCCCEEEEEeCCCCeEEEeeCCCCCcceEEEecCCCEEEEEe
Q 022967 157 SRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANGVALSKDEDYLVVCE 236 (289)
Q Consensus 157 ~~~~~~~~l~~~~dG~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~p~gl~~~~d~~~l~v~~ 236 (289)
...+..++-.+||+|+.|.+.+.. ++ ..+|.. .|.+++.-+ +++++.+...+..+||++|+.|.+.+|+.|
T Consensus 106 ~kknR~NDgkvdP~Gryy~GtMad-~~------~~le~~-~g~Ly~~~~-~h~v~~i~~~v~IsNgl~Wd~d~K~fY~iD 176 (310)
T KOG4499|consen 106 RKKNRLNDGKVDPDGRYYGGTMAD-FG------DDLEPI-GGELYSWLA-GHQVELIWNCVGISNGLAWDSDAKKFYYID 176 (310)
T ss_pred HHhcccccCccCCCCceeeeeecc-cc------cccccc-ccEEEEecc-CCCceeeehhccCCccccccccCcEEEEEc
Confidence 334566788999999999988752 11 122221 244555544 588888888899999999999999999999
Q ss_pred CCCCeE--EEEEecCCCCcceeeeec--c----CCCCCCceeeCCCCCEEEEEeCcc
Q 022967 237 TFKFRC--LKYWLKGESKEQTEIFVE--N----LPGGPDNIKLAPDGSFWIAILQVF 285 (289)
Q Consensus 237 ~~~~~i--~~~~~~~~~~~~~~~~~~--~----~~~~p~~i~~d~~G~lwv~~~~g~ 285 (289)
+.+..| +.||..+..+.+....++ + .+-.|||+++|.+|+|||++++|+
T Consensus 177 sln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~ 233 (310)
T KOG4499|consen 177 SLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGG 233 (310)
T ss_pred cCceEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCc
Confidence 999999 555576655554443332 1 224799999999999999999876
No 13
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.51 E-value=8.3e-12 Score=110.07 Aligned_cols=201 Identities=17% Similarity=0.230 Sum_probs=126.6
Q ss_pred cccceeEeccCCcCCcceEEEccCCC-EEEEe-cCCeEEEEe--cCCceEEee--------------eecCcCccCeEEc
Q 022967 64 DIQSVTRLGEGILNGPEDVCVDRNGV-LYTAT-RDGWIKRLH--KNGTWENWK--------------LIGGDTLLGITTT 125 (289)
Q Consensus 64 ~~~~~~~~~~~~~~~p~~l~~d~~g~-l~v~~-~~g~i~~~~--~~g~~~~~~--------------~~~~~p~~gl~~d 125 (289)
.+..+...... -..|..++++++|+ ||++. ..|.|..++ .+|.+.... .....|+ .+.++
T Consensus 75 ~L~~~~~~~~~-g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H-~v~~~ 152 (345)
T PF10282_consen 75 TLTLLNSVPSG-GSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPH-QVVFS 152 (345)
T ss_dssp EEEEEEEEEES-SSCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEE-EEEE-
T ss_pred eeEEeeeeccC-CCCcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccce-eEEEC
Confidence 44455555533 36899999999776 66777 567787776 557544321 1224577 89999
Q ss_pred CCCc-EEEEeCC-CceEEEe--C-CC-eEEEEeccCCccccCccceEEcCCC-cEEEeeCCCccCccccccccceecCCC
Q 022967 126 QENE-ILVCDAD-KGLLKVT--E-EG-VTVLASHVNGSRINLADDLIAATDG-SIYFSVASTKFGLHNWGLDLLEAKPHG 198 (289)
Q Consensus 126 ~~g~-l~v~~~~-~~i~~~~--~-~g-~~~~~~~~~~~~~~~~~~l~~~~dG-~lyv~~~~~~~~~~~~~~~~~~~~~~g 198 (289)
++|+ +|+++.+ ..|+.++ . .+ +..... ..-.....|+.+++.||| .+|+..... ..-
T Consensus 153 pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~-~~~~~G~GPRh~~f~pdg~~~Yv~~e~s---------------~~v 216 (345)
T PF10282_consen 153 PDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDS-IKVPPGSGPRHLAFSPDGKYAYVVNELS---------------NTV 216 (345)
T ss_dssp TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEE-EECSTTSSEEEEEE-TTSSEEEEEETTT---------------TEE
T ss_pred CCCCEEEEEecCCCEEEEEEEeCCCceEEEeec-cccccCCCCcEEEEcCCcCEEEEecCCC---------------CcE
Confidence 9986 8888876 4566665 2 33 433221 122234579999999998 588886531 112
Q ss_pred EEEEEeCCCCeEEEee------C---CCCCcceEEEecCCCEEEEEeCCCCeEEEEEecCC--CCcceeeeeccCCCCCC
Q 022967 199 KLLKYDPSLNETSILL------D---SLFFANGVALSKDEDYLVVCETFKFRCLKYWLKGE--SKEQTEIFVENLPGGPD 267 (289)
Q Consensus 199 ~i~~~~~~~~~~~~~~------~---~~~~p~gl~~~~d~~~l~v~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~~~p~ 267 (289)
.++.++..++.++... . +...+.+|+++|||++||+++++.+.|..|+++.. .+....... .....|+
T Consensus 217 ~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~-~~G~~Pr 295 (345)
T PF10282_consen 217 SVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVP-TGGKFPR 295 (345)
T ss_dssp EEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEE-ESSSSEE
T ss_pred EEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEe-CCCCCcc
Confidence 3455664456554431 1 12368899999999999999999999999999542 333322222 2235699
Q ss_pred ceeeCCCCC-EEEEEeC
Q 022967 268 NIKLAPDGS-FWIAILQ 283 (289)
Q Consensus 268 ~i~~d~~G~-lwv~~~~ 283 (289)
++++|++|+ |||+...
T Consensus 296 ~~~~s~~g~~l~Va~~~ 312 (345)
T PF10282_consen 296 HFAFSPDGRYLYVANQD 312 (345)
T ss_dssp EEEE-TTSSEEEEEETT
T ss_pred EEEEeCCCCEEEEEecC
Confidence 999999996 6777644
No 14
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=99.41 E-value=7.5e-11 Score=105.65 Aligned_cols=170 Identities=19% Similarity=0.208 Sum_probs=113.4
Q ss_pred ceeEeccCCcCCcceEEEccCCCEEEEec-CCeEEEEecC-CceEEe------e-e-ecCcCccCeEEcCC-------Cc
Q 022967 67 SVTRLGEGILNGPEDVCVDRNGVLYTATR-DGWIKRLHKN-GTWENW------K-L-IGGDTLLGITTTQE-------NE 129 (289)
Q Consensus 67 ~~~~~~~~~~~~p~~l~~d~~g~l~v~~~-~g~i~~~~~~-g~~~~~------~-~-~~~~p~~gl~~d~~-------g~ 129 (289)
+++.+.++ +..|++|++.++|++|++.. .|+|++++.+ +..... . . ..+..+ ||+++++ +.
T Consensus 21 ~~~~va~G-L~~Pw~maflPDG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLl-glal~PdF~~~~~n~~ 98 (454)
T TIGR03606 21 DKKVLLSG-LNKPWALLWGPDNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLL-GLALHPDFMQEKGNPY 98 (454)
T ss_pred EEEEEECC-CCCceEEEEcCCCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCcee-eEEECCCccccCCCcE
Confidence 35667777 89999999999999999997 5999999843 332211 1 1 235567 9999865 35
Q ss_pred EEEEe----------CCCceEEEe-C-C-C----eEEEEeccCCccccCccceEEcCCCcEEEeeCCCccC------ccc
Q 022967 130 ILVCD----------ADKGLLKVT-E-E-G----VTVLASHVNGSRINLADDLIAATDGSIYFSVASTKFG------LHN 186 (289)
Q Consensus 130 l~v~~----------~~~~i~~~~-~-~-g----~~~~~~~~~~~~~~~~~~l~~~~dG~lyv~~~~~~~~------~~~ 186 (289)
||++- ....|.|+. . + . .+.+....+....|.-..|+++|||.|||+.+..-.. ...
T Consensus 99 lYvsyt~~~~~~~~~~~~~I~R~~l~~~~~~l~~~~~Il~~lP~~~~H~GgrI~FgPDG~LYVs~GD~g~~~~~n~~~~~ 178 (454)
T TIGR03606 99 VYISYTYKNGDKELPNHTKIVRYTYDKSTQTLEKPVDLLAGLPAGNDHNGGRLVFGPDGKIYYTIGEQGRNQGANFFLPN 178 (454)
T ss_pred EEEEEeccCCCCCccCCcEEEEEEecCCCCccccceEEEecCCCCCCcCCceEEECCCCcEEEEECCCCCCCcccccCcc
Confidence 88873 124577775 2 2 1 2344433333345667789999999999987763110 000
Q ss_pred cccc------c---ceecCCCEEEEEeCCCC-----------eEEEeeCCCCCcceEEEecCCCEEEEEeCCC
Q 022967 187 WGLD------L---LEAKPHGKLLKYDPSLN-----------ETSILLDSLFFANGVALSKDEDYLVVCETFK 239 (289)
Q Consensus 187 ~~~~------~---~~~~~~g~i~~~~~~~~-----------~~~~~~~~~~~p~gl~~~~d~~~l~v~~~~~ 239 (289)
..+. . -.....|.|+|+++++. ..++++.++++|.|++|+|+++ ||++|.+.
T Consensus 179 ~aQ~~~~~~~~~~~d~~~~~GkILRin~DGsiP~dNPf~~g~~~eIyA~G~RNp~Gla~dp~G~-Lw~~e~Gp 250 (454)
T TIGR03606 179 QAQHTPTQQELNGKDYHAYMGKVLRLNLDGSIPKDNPSINGVVSHIFTYGHRNPQGLAFTPDGT-LYASEQGP 250 (454)
T ss_pred hhccccccccccccCcccCceEEEEEcCCCCCCCCCCccCCCcceEEEEeccccceeEECCCCC-EEEEecCC
Confidence 0000 0 01124679999999853 2367888999999999999766 99999765
No 15
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=99.35 E-value=1.3e-10 Score=99.74 Aligned_cols=146 Identities=16% Similarity=0.247 Sum_probs=105.6
Q ss_pred CcCCcceEEEccCCCEEEEecC------------CeEEEEecCCceEEeeee-cCcCccCeEEcCCC-cEEEEeCC-Cce
Q 022967 75 ILNGPEDVCVDRNGVLYTATRD------------GWIKRLHKNGTWENWKLI-GGDTLLGITTTQEN-EILVCDAD-KGL 139 (289)
Q Consensus 75 ~~~~p~~l~~d~~g~l~v~~~~------------g~i~~~~~~g~~~~~~~~-~~~p~~gl~~d~~g-~l~v~~~~-~~i 139 (289)
....|.++.++++|++|+++.. |.|++++++|...+.... ...|+ ||+|++|| .+|++|.. +.+
T Consensus 109 ~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~~~~l~~~~~~~~N-Gla~SpDg~tly~aDT~~~~i 187 (307)
T COG3386 109 PLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDPDGGVVRLLDDDLTIPN-GLAFSPDGKTLYVADTPANRI 187 (307)
T ss_pred CcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcCCCCEEEeecCcEEecC-ceEECCCCCEEEEEeCCCCeE
Confidence 3678999999999999988743 569999987877766655 67789 99999999 69999976 678
Q ss_pred EEEe-C--CC-e---EEEEeccCCccccCccceEEcCCCcEEEeeCCCccCccccccccceecCCCEEEEEeCCCCeEEE
Q 022967 140 LKVT-E--EG-V---TVLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSI 212 (289)
Q Consensus 140 ~~~~-~--~g-~---~~~~~~~~~~~~~~~~~l~~~~dG~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~ 212 (289)
++++ + ++ + ..... ... .-..|.++++|.+|++|++... ..++|.+++|++.....
T Consensus 188 ~r~~~d~~~g~~~~~~~~~~-~~~-~~G~PDG~~vDadG~lw~~a~~----------------~g~~v~~~~pdG~l~~~ 249 (307)
T COG3386 188 HRYDLDPATGPIGGRRGFVD-FDE-EPGLPDGMAVDADGNLWVAAVW----------------GGGRVVRFNPDGKLLGE 249 (307)
T ss_pred EEEecCcccCccCCcceEEE-ccC-CCCCCCceEEeCCCCEEEeccc----------------CCceEEEECCCCcEEEE
Confidence 8887 3 23 1 11111 111 1236899999999999975432 12489999999555555
Q ss_pred eeCCCCCcceEEE-ecCCCEEEEEeCCC
Q 022967 213 LLDSLFFANGVAL-SKDEDYLVVCETFK 239 (289)
Q Consensus 213 ~~~~~~~p~gl~~-~~d~~~l~v~~~~~ 239 (289)
+.-....|...+| .++.+.|||+....
T Consensus 250 i~lP~~~~t~~~FgG~~~~~L~iTs~~~ 277 (307)
T COG3386 250 IKLPVKRPTNPAFGGPDLNTLYITSARS 277 (307)
T ss_pred EECCCCCCccceEeCCCcCEEEEEecCC
Confidence 5444466677777 46788999997654
No 16
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.34 E-value=6.2e-10 Score=97.63 Aligned_cols=187 Identities=12% Similarity=0.108 Sum_probs=115.3
Q ss_pred CCcceEEEccCCC-EEEEe-cCCeEEEEe--cCCceEE-ee--eecCcCccCeEEcCCCc-EEEEeCC-CceEEEe--CC
Q 022967 77 NGPEDVCVDRNGV-LYTAT-RDGWIKRLH--KNGTWEN-WK--LIGGDTLLGITTTQENE-ILVCDAD-KGLLKVT--EE 145 (289)
Q Consensus 77 ~~p~~l~~d~~g~-l~v~~-~~g~i~~~~--~~g~~~~-~~--~~~~~p~~gl~~d~~g~-l~v~~~~-~~i~~~~--~~ 145 (289)
..|..++++++|+ ||++. .++.|..++ .+|.... .. .....|+ +++++++|+ +|+++.+ +.|..++ .+
T Consensus 80 ~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~-~~~~~p~g~~l~v~~~~~~~v~v~d~~~~ 158 (330)
T PRK11028 80 GSPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIEGLEGCH-SANIDPDNRTLWVPCLKEDRIRLFTLSDD 158 (330)
T ss_pred CCceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeeccCCCccc-EeEeCCCCCEEEEeeCCCCEEEEEEECCC
Confidence 4689999999886 66665 568888887 3454321 11 1224578 999999885 7788765 4566666 33
Q ss_pred C-eEEEE-eccCCccccCccceEEcCCCc-EEEeeCCCccCccccccccceecCCCEEEE--EeCCCCeEEEee------
Q 022967 146 G-VTVLA-SHVNGSRINLADDLIAATDGS-IYFSVASTKFGLHNWGLDLLEAKPHGKLLK--YDPSLNETSILL------ 214 (289)
Q Consensus 146 g-~~~~~-~~~~~~~~~~~~~l~~~~dG~-lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~--~~~~~~~~~~~~------ 214 (289)
| +.... ..........|++++++|||+ +|+++.. .+.|.. ++..+++.+.+.
T Consensus 159 g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~-----------------~~~v~v~~~~~~~~~~~~~~~~~~~p 221 (330)
T PRK11028 159 GHLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNEL-----------------NSSVDVWQLKDPHGEIECVQTLDMMP 221 (330)
T ss_pred CcccccCCCceecCCCCCCceEEECCCCCEEEEEecC-----------------CCEEEEEEEeCCCCCEEEEEEEecCC
Confidence 5 42110 000001124688999999985 7787642 244544 443344443321
Q ss_pred C---CCCCcceEEEecCCCEEEEEeCCCCeEEEEEecCCCC-cceeeeeccCCCCCCceeeCCCC-CEEEEEe
Q 022967 215 D---SLFFANGVALSKDEDYLVVCETFKFRCLKYWLKGESK-EQTEIFVENLPGGPDNIKLAPDG-SFWIAIL 282 (289)
Q Consensus 215 ~---~~~~p~gl~~~~d~~~l~v~~~~~~~i~~~~~~~~~~-~~~~~~~~~~~~~p~~i~~d~~G-~lwv~~~ 282 (289)
. +...+.+++++||++++|+++...+.|..|+++.+.. ....... .....|.++.++.+| .+|++..
T Consensus 222 ~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~-~~~~~p~~~~~~~dg~~l~va~~ 293 (330)
T PRK11028 222 ADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSEDGSVLSFEGHQ-PTETQPRGFNIDHSGKYLIAAGQ 293 (330)
T ss_pred CcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCCCCeEEEeEEE-eccccCCceEECCCCCEEEEEEc
Confidence 1 1234557899999999999988889999998864321 1111111 112468999999999 5676654
No 17
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=99.33 E-value=3.1e-10 Score=100.90 Aligned_cols=205 Identities=17% Similarity=0.154 Sum_probs=121.9
Q ss_pred eeEeccCCcCCcceEEEccCCCEEEEecCCeEEEEe-cC--C----ceEEeeeec--------CcCccCeEEcCCCcEEE
Q 022967 68 VTRLGEGILNGPEDVCVDRNGVLYTATRDGWIKRLH-KN--G----TWENWKLIG--------GDTLLGITTTQENEILV 132 (289)
Q Consensus 68 ~~~~~~~~~~~p~~l~~d~~g~l~v~~~~g~i~~~~-~~--g----~~~~~~~~~--------~~p~~gl~~d~~g~l~v 132 (289)
...+..+ +..|++|++.++| ||+++. .+|+++. .+ + +.+.+.... ..++ ++++++||.||+
T Consensus 64 ~~vfa~~-l~~p~Gi~~~~~G-lyV~~~-~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~-~l~~gpDG~LYv 139 (367)
T TIGR02604 64 SNVFAEE-LSMVTGLAVAVGG-VYVATP-PDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLN-SLAWGPDGWLYF 139 (367)
T ss_pred eEEeecC-CCCccceeEecCC-EEEeCC-CeEEEEeCCCCCCCCCCccEEEEEccCCCCCccccccc-CceECCCCCEEE
Confidence 3444444 7889999999888 999764 4588884 32 2 444443321 2266 999999999999
Q ss_pred EeCC--------------------CceEEEeCCC--eEEEEeccCCccccCccceEEcCCCcEEEeeCCCccCccccccc
Q 022967 133 CDAD--------------------KGLLKVTEEG--VTVLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLD 190 (289)
Q Consensus 133 ~~~~--------------------~~i~~~~~~g--~~~~~~~~~~~~~~~~~~l~~~~dG~lyv~~~~~~~~~~~~~~~ 190 (289)
+... .+++++++++ ++++.. .+..+++++++++|.+|+++.... .......
T Consensus 140 ~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~pdg~~~e~~a~-----G~rnp~Gl~~d~~G~l~~tdn~~~--~~~~i~~ 212 (367)
T TIGR02604 140 NHGNTLASKVTRPGTSDESRQGLGGGLFRYNPDGGKLRVVAH-----GFQNPYGHSVDSWGDVFFCDNDDP--PLCRVTP 212 (367)
T ss_pred ecccCCCceeccCCCccCcccccCceEEEEecCCCeEEEEec-----CcCCCccceECCCCCEEEEccCCC--ceeEEcc
Confidence 7541 2488888555 665532 356799999999999999986421 0000000
Q ss_pred cceecCCCEEEE-----EeCCCC---eE---------------EEeeCCCCCcceEEEec-------CCCEEEEEeCCCC
Q 022967 191 LLEAKPHGKLLK-----YDPSLN---ET---------------SILLDSLFFANGVALSK-------DEDYLVVCETFKF 240 (289)
Q Consensus 191 ~~~~~~~g~i~~-----~~~~~~---~~---------------~~~~~~~~~p~gl~~~~-------d~~~l~v~~~~~~ 240 (289)
+.+....+..+. .++..+ +. .........|.|+++.. -.+.+++++...+
T Consensus 213 ~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ap~G~~~y~g~~fp~~~~g~~fv~~~~~~ 292 (367)
T TIGR02604 213 VAEGGRNGYQSFNGRRYDHADRGADHEVPTGEWRQDDRGVETVGDVAGGGTAPCGIAFYRGDALPEEYRGLLLVGDAHGQ 292 (367)
T ss_pred cccccccCCCCCCCcccccccccccccccccccccccccccccccccCCCccccEEEEeCCCcCCHHHCCCEEeeeccCC
Confidence 000000000000 000000 00 00011223678888773 2344899999999
Q ss_pred eEEEEEec--CCCCcce-eeeeccCC--CCCCceeeCCCCCEEEEEeC
Q 022967 241 RCLKYWLK--GESKEQT-EIFVENLP--GGPDNIKLAPDGSFWIAILQ 283 (289)
Q Consensus 241 ~i~~~~~~--~~~~~~~-~~~~~~~~--~~p~~i~~d~~G~lwv~~~~ 283 (289)
+|.++.++ +...... ..|..... ..|..+.++.||.|||+++.
T Consensus 293 ~v~~~~l~~~g~~~~~~~~~~l~~~~~~~rp~dv~~~pDG~Lyv~d~~ 340 (367)
T TIGR02604 293 LIVRYSLEPKGAGFKGERPEFLRSNDTWFRPVNVTVGPDGALYVSDWY 340 (367)
T ss_pred EEEEEEeecCCCccEeecCceEecCCCcccccceeECCCCCEEEEEec
Confidence 99999886 3222211 23333222 47888999999999999954
No 18
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.29 E-value=3.2e-09 Score=89.78 Aligned_cols=188 Identities=17% Similarity=0.236 Sum_probs=122.7
Q ss_pred CCcceEEEccCCCEE-EEe-cCCeEEEEe--cCCceEEe----eeec---------CcCccCeEEcCCCc-EEEEeCC-C
Q 022967 77 NGPEDVCVDRNGVLY-TAT-RDGWIKRLH--KNGTWENW----KLIG---------GDTLLGITTTQENE-ILVCDAD-K 137 (289)
Q Consensus 77 ~~p~~l~~d~~g~l~-v~~-~~g~i~~~~--~~g~~~~~----~~~~---------~~p~~gl~~d~~g~-l~v~~~~-~ 137 (289)
..|..+++|++|++. ++. ..|.|.++. .+|.+... ...+ ..++ ...++++++ |+++|-+ .
T Consensus 89 ~~p~yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H-~a~~tP~~~~l~v~DLG~D 167 (346)
T COG2706 89 SPPCYVSVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVH-SANFTPDGRYLVVPDLGTD 167 (346)
T ss_pred CCCeEEEECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccc-eeeeCCCCCEEEEeecCCc
Confidence 557899999999654 666 346666665 56754322 1111 1255 677889995 6677765 5
Q ss_pred ceEEEe-CCC-eEEEEeccCCccccCccceEEcCCCc-EEEeeCCCccCccccccccceecCCCEEEEEeCCCCeEEEee
Q 022967 138 GLLKVT-EEG-VTVLASHVNGSRINLADDLIAATDGS-IYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILL 214 (289)
Q Consensus 138 ~i~~~~-~~g-~~~~~~~~~~~~~~~~~~l~~~~dG~-lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~ 214 (289)
+++.++ .+| ++......- .+-..|+.|++.|+|. .|+... .+.+-.++.|++..++++.+.
T Consensus 168 ri~~y~~~dg~L~~~~~~~v-~~G~GPRHi~FHpn~k~aY~v~E---------------L~stV~v~~y~~~~g~~~~lQ 231 (346)
T COG2706 168 RIFLYDLDDGKLTPADPAEV-KPGAGPRHIVFHPNGKYAYLVNE---------------LNSTVDVLEYNPAVGKFEELQ 231 (346)
T ss_pred eEEEEEcccCcccccccccc-CCCCCcceEEEcCCCcEEEEEec---------------cCCEEEEEEEcCCCceEEEee
Confidence 677777 677 544322111 2335799999999996 677653 223335677887767776542
Q ss_pred ------C---CCCCcceEEEecCCCEEEEEeCCCCeEEEEEecCC--CCcceeeeeccCCCCCCceeeCCCCCEEEEEe
Q 022967 215 ------D---SLFFANGVALSKDEDYLVVCETFKFRCLKYWLKGE--SKEQTEIFVENLPGGPDNIKLAPDGSFWIAIL 282 (289)
Q Consensus 215 ------~---~~~~p~gl~~~~d~~~l~v~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~~~p~~i~~d~~G~lwv~~~ 282 (289)
+ +..+...|.+++||++||+++++.+.|..|.++.. .+.-. .........|+.+.++..|++.++..
T Consensus 232 ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~-~~~~teg~~PR~F~i~~~g~~Liaa~ 309 (346)
T COG2706 232 TIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPDGGKLELV-GITPTEGQFPRDFNINPSGRFLIAAN 309 (346)
T ss_pred eeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEEEEEcCCCCEEEEE-EEeccCCcCCccceeCCCCCEEEEEc
Confidence 2 23444567899999999999999999998887642 22111 11212223599999999998888764
No 19
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.27 E-value=3.3e-09 Score=93.62 Aligned_cols=190 Identities=16% Similarity=0.264 Sum_probs=119.1
Q ss_pred cCCcceEEEccCC-CEEEEec----CCeEEEEe--cC-CceEEeee---ecCcCccCeEEcCCCc-EEEEeCCCc-e--E
Q 022967 76 LNGPEDVCVDRNG-VLYTATR----DGWIKRLH--KN-GTWENWKL---IGGDTLLGITTTQENE-ILVCDADKG-L--L 140 (289)
Q Consensus 76 ~~~p~~l~~d~~g-~l~v~~~----~g~i~~~~--~~-g~~~~~~~---~~~~p~~gl~~d~~g~-l~v~~~~~~-i--~ 140 (289)
...|..|++++++ .||+... .+.|..+. .+ |+++.+.. .+..|. .++++++++ ||+++...+ + +
T Consensus 36 ~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~-~i~~~~~g~~l~vany~~g~v~v~ 114 (345)
T PF10282_consen 36 GENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPC-HIAVDPDGRFLYVANYGGGSVSVF 114 (345)
T ss_dssp SSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEE-EEEECTTSSEEEEEETTTTEEEEE
T ss_pred CCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcE-EEEEecCCCEEEEEEccCCeEEEE
Confidence 5789999999855 5786654 46887776 45 76665432 345678 899998885 788876543 4 4
Q ss_pred EEeCCC-eEEEEecc------C---CccccCccceEEcCCCc-EEEeeCCCccCccccccccceecCCCEEEEEeCCC--
Q 022967 141 KVTEEG-VTVLASHV------N---GSRINLADDLIAATDGS-IYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSL-- 207 (289)
Q Consensus 141 ~~~~~g-~~~~~~~~------~---~~~~~~~~~l~~~~dG~-lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~-- 207 (289)
.++.+| +....... + .....++..+.++|||+ +|+++.. ..+|+.|+.+.
T Consensus 115 ~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG-----------------~D~v~~~~~~~~~ 177 (345)
T PF10282_consen 115 PLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLG-----------------ADRVYVYDIDDDT 177 (345)
T ss_dssp EECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETT-----------------TTEEEEEEE-TTS
T ss_pred EccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecC-----------------CCEEEEEEEeCCC
Confidence 444567 43321110 1 11234677899999985 8888754 34666665543
Q ss_pred CeEEE----eeCCCCCcceEEEecCCCEEEEEeCCCCeEEEEEecC--CCCcceeeee---ccCC--CCCCceeeCCCCC
Q 022967 208 NETSI----LLDSLFFANGVALSKDEDYLVVCETFKFRCLKYWLKG--ESKEQTEIFV---ENLP--GGPDNIKLAPDGS 276 (289)
Q Consensus 208 ~~~~~----~~~~~~~p~gl~~~~d~~~l~v~~~~~~~i~~~~~~~--~~~~~~~~~~---~~~~--~~p~~i~~d~~G~ 276 (289)
+++.. -......|..++|+||++++||++...+.|..|+.+. ..+...+... .... ..|..|++++||+
T Consensus 178 ~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~ 257 (345)
T PF10282_consen 178 GKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGR 257 (345)
T ss_dssp -TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSS
T ss_pred ceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCC
Confidence 33433 2345678999999999999999999999999999883 2222222111 1111 2577799999995
Q ss_pred -EEEEEeC
Q 022967 277 -FWIAILQ 283 (289)
Q Consensus 277 -lwv~~~~ 283 (289)
+||+..+
T Consensus 258 ~lyvsnr~ 265 (345)
T PF10282_consen 258 FLYVSNRG 265 (345)
T ss_dssp EEEEEECT
T ss_pred EEEEEecc
Confidence 6777654
No 20
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.26 E-value=4e-09 Score=92.49 Aligned_cols=197 Identities=9% Similarity=0.118 Sum_probs=120.9
Q ss_pred cccceeEeccCCcCCcceEEEccCCC-EEEEe-cCCeEEEEe--cCCceEEee--eecCcCccCeEEcCCCc-EEEEeCC
Q 022967 64 DIQSVTRLGEGILNGPEDVCVDRNGV-LYTAT-RDGWIKRLH--KNGTWENWK--LIGGDTLLGITTTQENE-ILVCDAD 136 (289)
Q Consensus 64 ~~~~~~~~~~~~~~~p~~l~~d~~g~-l~v~~-~~g~i~~~~--~~g~~~~~~--~~~~~p~~gl~~d~~g~-l~v~~~~ 136 (289)
.+..+..+..+ ..|..++++++|+ ||++. .++.|..++ .+|+++... ...+.|. +++++++|+ +|++...
T Consensus 24 ~l~~~~~~~~~--~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~~~~~p~-~i~~~~~g~~l~v~~~~ 100 (330)
T PRK11028 24 ALTLLQVVDVP--GQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESPLPGSPT-HISTDHQGRFLFSASYN 100 (330)
T ss_pred ceeeeeEEecC--CCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeecCCCCce-EEEECCCCCEEEEEEcC
Confidence 33344444433 5688999999886 67765 567787666 356554332 2235688 999999986 7777643
Q ss_pred -CceEEEe--CCC-eEEEEeccCCccccCccceEEcCCCc-EEEeeCCCccCccccccccceecCCCEEEEEeCCC-CeE
Q 022967 137 -KGLLKVT--EEG-VTVLASHVNGSRINLADDLIAATDGS-IYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSL-NET 210 (289)
Q Consensus 137 -~~i~~~~--~~g-~~~~~~~~~~~~~~~~~~l~~~~dG~-lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~-~~~ 210 (289)
+.+..++ .+| .........+ ...+.+++++|+|+ +|+++.. .+.|..+|.++ +.+
T Consensus 101 ~~~v~v~~~~~~g~~~~~~~~~~~--~~~~~~~~~~p~g~~l~v~~~~-----------------~~~v~v~d~~~~g~l 161 (330)
T PRK11028 101 ANCVSVSPLDKDGIPVAPIQIIEG--LEGCHSANIDPDNRTLWVPCLK-----------------EDRIRLFTLSDDGHL 161 (330)
T ss_pred CCeEEEEEECCCCCCCCceeeccC--CCcccEeEeCCCCCEEEEeeCC-----------------CCEEEEEEECCCCcc
Confidence 4455555 455 3221111111 23577889999985 7777643 35666666543 322
Q ss_pred EE------eeCCCCCcceEEEecCCCEEEEEeCCCCeEEEEEecCC--CCcceeeee---cc--CCCCCCceeeCCCCC-
Q 022967 211 SI------LLDSLFFANGVALSKDEDYLVVCETFKFRCLKYWLKGE--SKEQTEIFV---EN--LPGGPDNIKLAPDGS- 276 (289)
Q Consensus 211 ~~------~~~~~~~p~gl~~~~d~~~l~v~~~~~~~i~~~~~~~~--~~~~~~~~~---~~--~~~~p~~i~~d~~G~- 276 (289)
.. -......|.+++|+||++++|+++...+.|..|+++.. ++....... .. .+..+..+.++++|+
T Consensus 162 ~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~ 241 (330)
T PRK11028 162 VAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRH 241 (330)
T ss_pred cccCCCceecCCCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCE
Confidence 11 11224568999999999999999998899999998732 221111111 00 112344588889885
Q ss_pred EEEEEe
Q 022967 277 FWIAIL 282 (289)
Q Consensus 277 lwv~~~ 282 (289)
+|++..
T Consensus 242 lyv~~~ 247 (330)
T PRK11028 242 LYACDR 247 (330)
T ss_pred EEEecC
Confidence 677754
No 21
>KOG4659 consensus Uncharacterized conserved protein (Rhs family) [Function unknown]
Probab=99.26 E-value=1.1e-09 Score=105.14 Aligned_cols=198 Identities=17% Similarity=0.234 Sum_probs=128.5
Q ss_pred ccccceeEeccCCcCCcceEEEcc-CCCEEEEec-CCeEEEEe-c-----CCceEEeee----------ec---------
Q 022967 63 SDIQSVTRLGEGILNGPEDVCVDR-NGVLYTATR-DGWIKRLH-K-----NGTWENWKL----------IG--------- 115 (289)
Q Consensus 63 ~~~~~~~~~~~~~~~~p~~l~~d~-~g~l~v~~~-~g~i~~~~-~-----~g~~~~~~~----------~~--------- 115 (289)
..+..+-++......+-..+|++| +|.||+++. ..+|+|+. . .++++.++. .|
T Consensus 393 g~v~tIl~L~~t~~sh~Yy~AvsPvdgtlyvSdp~s~qv~rv~sl~~~d~~~N~evvaG~Ge~Clp~desCGDGalA~dA 472 (1899)
T KOG4659|consen 393 GQVSTILTLGLTDTSHSYYIAVSPVDGTLYVSDPLSKQVWRVSSLEPQDSRNNYEVVAGDGEVCLPADESCGDGALAQDA 472 (1899)
T ss_pred CceEEEEEecCCCccceeEEEecCcCceEEecCCCcceEEEeccCCccccccCeeEEeccCcCccccccccCcchhcccc
Confidence 334444444433234556699999 999999884 46799886 1 223444321 12
Q ss_pred --CcCccCeEEcCCCcEEEEeCCCceEEEeCCC-eEEEEecc---------------CCccccCccceEEcC-CCcEEEe
Q 022967 116 --GDTLLGITTTQENEILVCDADKGLLKVTEEG-VTVLASHV---------------NGSRINLADDLIAAT-DGSIYFS 176 (289)
Q Consensus 116 --~~p~~gl~~d~~g~l~v~~~~~~i~~~~~~g-~~~~~~~~---------------~~~~~~~~~~l~~~~-dG~lyv~ 176 (289)
..|. ||++|++|.||++|. ..|..+|.+| ++.+.... ..-.+..|.+|+++| |+.|||-
T Consensus 473 ~L~~Pk-GIa~dk~g~lYfaD~-t~IR~iD~~giIstlig~~~~~~~p~~C~~~~kl~~~~leWPT~LaV~Pmdnsl~Vl 550 (1899)
T KOG4659|consen 473 QLIFPK-GIAFDKMGNLYFADG-TRIRVIDTTGIISTLIGTTPDQHPPRTCAQITKLVDLQLEWPTSLAVDPMDNSLLVL 550 (1899)
T ss_pred eeccCC-ceeEccCCcEEEecc-cEEEEeccCceEEEeccCCCCccCccccccccchhheeeecccceeecCCCCeEEEe
Confidence 2588 999999999999995 7788899888 76654321 112456899999999 8999999
Q ss_pred eCCCccCccccccccceecCCCEEEEEeCCCCeEEEee---------------------CCCCCcceEEEecCCCEEEEE
Q 022967 177 VASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILL---------------------DSLFFANGVALSKDEDYLVVC 235 (289)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~---------------------~~~~~p~gl~~~~d~~~l~v~ 235 (289)
|.. -|+++++. +++.+.+ ..+..+..++++++|. |||+
T Consensus 551 d~n-------------------vvlrit~~-~rV~Ii~GrP~hC~~a~~t~~~skla~H~tl~~~r~Iavg~~G~-lyva 609 (1899)
T KOG4659|consen 551 DTN-------------------VVLRITVV-HRVRIILGRPTHCDLANATSSASKLADHRTLLIQRDIAVGTDGA-LYVA 609 (1899)
T ss_pred ecc-------------------eEEEEccC-ccEEEEcCCccccccCCCchhhhhhhhhhhhhhhhceeecCCce-EEEE
Confidence 853 45666554 3333221 1134467889999997 9999
Q ss_pred eCCCCeEEEEEe---cCC------CCcce--eeee--c-----------cCCCCCCceeeCCCCCEEEEEeC
Q 022967 236 ETFKFRCLKYWL---KGE------SKEQT--EIFV--E-----------NLPGGPDNIKLAPDGSFWIAILQ 283 (289)
Q Consensus 236 ~~~~~~i~~~~~---~~~------~~~~~--~~~~--~-----------~~~~~p~~i~~d~~G~lwv~~~~ 283 (289)
++..++|.+... +|. ....+ ..-. + ..-+.|..+++.+||.++||+.+
T Consensus 610 EsD~rriNrvr~~~tdg~i~ilaGa~S~C~C~~~~~cdcfs~~~~~At~A~lnsp~alaVsPdg~v~IAD~g 681 (1899)
T KOG4659|consen 610 ESDGRRINRVRKLSTDGTISILAGAKSPCSCDVAACCDCFSLRDVAATQAKLNSPYALAVSPDGDVIIADSG 681 (1899)
T ss_pred eccchhhhheEEeccCceEEEecCCCCCCCcccccCCccccccchhhhccccCCcceEEECCCCcEEEecCC
Confidence 998877766543 221 00111 0000 0 01135888999999999999864
No 22
>COG2133 Glucose/sorbosone dehydrogenases [Carbohydrate transport and metabolism]
Probab=99.21 E-value=1e-09 Score=96.27 Aligned_cols=169 Identities=15% Similarity=0.136 Sum_probs=105.7
Q ss_pred eeEeccCCcCCcceEEEccCCCEEEEecC-CeEEEEecCC--------ceEEee----------------eecCcCccCe
Q 022967 68 VTRLGEGILNGPEDVCVDRNGVLYTATRD-GWIKRLHKNG--------TWENWK----------------LIGGDTLLGI 122 (289)
Q Consensus 68 ~~~~~~~~~~~p~~l~~d~~g~l~v~~~~-g~i~~~~~~g--------~~~~~~----------------~~~~~p~~gl 122 (289)
++.+..+ ++.|..++..++|.+.+.... |.+..+...+ ...... .....++ ++
T Consensus 59 ~~~~a~g-Le~p~~~~~lP~G~~~v~er~~G~l~~i~~g~~~~~~~~~~~~~~~~~~~Gll~~al~~~fa~~~~~~~-~~ 136 (399)
T COG2133 59 VEVVAQG-LEHPWGLARLPDGVLLVTERPTGRLRLISDGGSASPPVSTVPIVLLRGQGGLLDIALSPDFAQGRLVYF-GI 136 (399)
T ss_pred ccccccc-ccCchhheecCCceEEEEccCCccEEEecCCCcccccccccceEEeccCCCccceEecccccccceeee-EE
Confidence 4555667 899999999999966676655 7666654211 111111 1112344 55
Q ss_pred EEcCCCcEEEEeCCCceEEEe-CCC----eEEEEeccCCccccCccceEEcCCCcEEEeeCCCccCcc--ccc---cccc
Q 022967 123 TTTQENEILVCDADKGLLKVT-EEG----VTVLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLH--NWG---LDLL 192 (289)
Q Consensus 123 ~~d~~g~l~v~~~~~~i~~~~-~~g----~~~~~~~~~~~~~~~~~~l~~~~dG~lyv~~~~~~~~~~--~~~---~~~~ 192 (289)
++. .+.+|+++. ..+.+++ .+. ..++....++..+|+...|+++|||+||++.++...... +.. ..++
T Consensus 137 a~~-~~~~~~~n~-~~~~~~~~g~~~l~~~~~i~~~lP~~~~H~g~~l~f~pDG~Lyvs~G~~~~~~~aq~~~~~~Gk~~ 214 (399)
T COG2133 137 SEP-GGGLYVANR-VAIGRLPGGDTKLSEPKVIFRGIPKGGHHFGGRLVFGPDGKLYVTTGSNGDPALAQDNVSLAGKVL 214 (399)
T ss_pred Eee-cCCceEEEE-EEEEEcCCCccccccccEEeecCCCCCCcCcccEEECCCCcEEEEeCCCCCcccccCcccccccee
Confidence 553 345666654 4466676 222 344445556555788899999999999999876311100 111 1122
Q ss_pred eecCCCEEEEEeCCCCeEEEeeCCCCCcceEEEecCCCEEEEEeCCCCe
Q 022967 193 EAKPHGKLLKYDPSLNETSILLDSLFFANGVALSKDEDYLVVCETFKFR 241 (289)
Q Consensus 193 ~~~~~g~i~~~~~~~~~~~~~~~~~~~p~gl~~~~d~~~l~v~~~~~~~ 241 (289)
+... ..++..|.++...++++.++++|+|++|+|..+.||+++.+...
T Consensus 215 r~~~-a~~~~~d~p~~~~~i~s~G~RN~qGl~w~P~tg~Lw~~e~g~d~ 262 (399)
T COG2133 215 RIDR-AGIIPADNPFPNSEIWSYGHRNPQGLAWHPVTGALWTTEHGPDA 262 (399)
T ss_pred eecc-CcccccCCCCCCcceEEeccCCccceeecCCCCcEEEEecCCCc
Confidence 2222 34566666666677889999999999999986779999987633
No 23
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=99.10 E-value=4.2e-08 Score=87.64 Aligned_cols=181 Identities=18% Similarity=0.207 Sum_probs=126.3
Q ss_pred cCCcceEEEccCCC-EEEEe-cCCeEEEEe-cCCceEEeeeecCcCccCeEEcCCC-cEEEEeCC---CceEEEe-CCC-
Q 022967 76 LNGPEDVCVDRNGV-LYTAT-RDGWIKRLH-KNGTWENWKLIGGDTLLGITTTQEN-EILVCDAD---KGLLKVT-EEG- 146 (289)
Q Consensus 76 ~~~p~~l~~d~~g~-l~v~~-~~g~i~~~~-~~g~~~~~~~~~~~p~~gl~~d~~g-~l~v~~~~---~~i~~~~-~~g- 146 (289)
...|.++++.+.|. +|+.+ .++.|..++ ..-+.......+..|. ++++++++ .+||++.. +.+..+| ..+
T Consensus 73 ~~~p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG~~P~-~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~ 151 (381)
T COG3391 73 GVYPAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVGLGPV-GLAVDPDGKYVYVANAGNGNNTVSVIDAATNK 151 (381)
T ss_pred CccccceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeeeccCCc-eEEECCCCCEEEEEecccCCceEEEEeCCCCe
Confidence 37799999998665 99776 458899998 3333333344445899 99999887 79999973 4588888 444
Q ss_pred eEEEEeccCCccccCccceEEcCCCc-EEEeeCCCccCccccccccceecCCCEEEEEeCCCCeEEE-----eeCCCCCc
Q 022967 147 VTVLASHVNGSRINLADDLIAATDGS-IYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSI-----LLDSLFFA 220 (289)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~l~~~~dG~-lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~-----~~~~~~~p 220 (289)
+..... .+ ..|.+++++|+|. +|+++.. .+.|..+|.++..... .......|
T Consensus 152 ~~~~~~--vG---~~P~~~a~~p~g~~vyv~~~~-----------------~~~v~vi~~~~~~v~~~~~~~~~~~~~~P 209 (381)
T COG3391 152 VTATIP--VG---NTPTGVAVDPDGNKVYVTNSD-----------------DNTVSVIDTSGNSVVRGSVGSLVGVGTGP 209 (381)
T ss_pred EEEEEe--cC---CCcceEEECCCCCeEEEEecC-----------------CCeEEEEeCCCcceeccccccccccCCCC
Confidence 222211 21 1458999999996 9999843 4788899977554442 13446789
Q ss_pred ceEEEecCCCEEEEEeCCC--CeEEEEEecCCCCcceeeeeccCCCCCCceeeCCCCCEEEEE
Q 022967 221 NGVALSKDEDYLVVCETFK--FRCLKYWLKGESKEQTEIFVENLPGGPDNIKLAPDGSFWIAI 281 (289)
Q Consensus 221 ~gl~~~~d~~~l~v~~~~~--~~i~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~lwv~~ 281 (289)
.+++++++++.+|+++..+ +.+.++|...........-. ... .|.+++++.+|..+...
T Consensus 210 ~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~~~-~~~-~~~~v~~~p~g~~~yv~ 270 (381)
T COG3391 210 AGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTATDLPV-GSG-APRGVAVDPAGKAAYVA 270 (381)
T ss_pred ceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEecccc-ccC-CCCceeECCCCCEEEEE
Confidence 9999999999999999987 68999987654332221112 222 68899999999655444
No 24
>KOG4659 consensus Uncharacterized conserved protein (Rhs family) [Function unknown]
Probab=99.07 E-value=1e-08 Score=98.64 Aligned_cols=190 Identities=17% Similarity=0.259 Sum_probs=126.9
Q ss_pred cCCcceEEEccCCCEEEEecCCeEEEEecCCceEEeeeec-C---cCccCeEEcC-CCcEEEEeCC-CceEEEe---C-C
Q 022967 76 LNGPEDVCVDRNGVLYTATRDGWIKRLHKNGTWENWKLIG-G---DTLLGITTTQ-ENEILVCDAD-KGLLKVT---E-E 145 (289)
Q Consensus 76 ~~~p~~l~~d~~g~l~v~~~~g~i~~~~~~g~~~~~~~~~-~---~p~~gl~~d~-~g~l~v~~~~-~~i~~~~---~-~ 145 (289)
+..|-.+|..+||.||+++.+ .|.|+.++|++..+..-. . ... -||+++ +|.|||++.. +.|+|+. + +
T Consensus 364 L~aPvala~a~DGSl~VGDfN-yIRRI~~dg~v~tIl~L~~t~~sh~Y-y~AvsPvdgtlyvSdp~s~qv~rv~sl~~~d 441 (1899)
T KOG4659|consen 364 LFAPVALAYAPDGSLIVGDFN-YIRRISQDGQVSTILTLGLTDTSHSY-YIAVSPVDGTLYVSDPLSKQVWRVSSLEPQD 441 (1899)
T ss_pred eeceeeEEEcCCCcEEEccch-heeeecCCCceEEEEEecCCCcccee-EEEecCcCceEEecCCCcceEEEeccCCccc
Confidence 778999999999999999875 489998999877665432 2 233 588886 8899999876 5688885 1 1
Q ss_pred --C-eEEEEec----------------cCCccccCccceEEcCCCcEEEeeCCCccCccccccccceecCCCEEEEEeCC
Q 022967 146 --G-VTVLASH----------------VNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPS 206 (289)
Q Consensus 146 --g-~~~~~~~----------------~~~~~~~~~~~l~~~~dG~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~ 206 (289)
+ .++++.. .....+.+|.||++|++|.|||+|+. .|-++|..
T Consensus 442 ~~~N~evvaG~Ge~Clp~desCGDGalA~dA~L~~PkGIa~dk~g~lYfaD~t-------------------~IR~iD~~ 502 (1899)
T KOG4659|consen 442 SRNNYEVVAGDGEVCLPADESCGDGALAQDAQLIFPKGIAFDKMGNLYFADGT-------------------RIRVIDTT 502 (1899)
T ss_pred cccCeeEEeccCcCccccccccCcchhcccceeccCCceeEccCCcEEEeccc-------------------EEEEeccC
Confidence 2 4555421 01234678999999999999999865 34455543
Q ss_pred CCeEEEe--------------------eCCCCCcceEEEecCCCEEEEEeCCCCeEEEEEecCC------CCccee----
Q 022967 207 LNETSIL--------------------LDSLFFANGVALSKDEDYLVVCETFKFRCLKYWLKGE------SKEQTE---- 256 (289)
Q Consensus 207 ~~~~~~~--------------------~~~~~~p~gl~~~~d~~~l~v~~~~~~~i~~~~~~~~------~~~~~~---- 256 (289)
|-+..+ .-.+.+|..++++|=.+.|||-|+ +-|++++.... .-..+.
T Consensus 503 -giIstlig~~~~~~~p~~C~~~~kl~~~~leWPT~LaV~Pmdnsl~Vld~--nvvlrit~~~rV~Ii~GrP~hC~~a~~ 579 (1899)
T KOG4659|consen 503 -GIISTLIGTTPDQHPPRTCAQITKLVDLQLEWPTSLAVDPMDNSLLVLDT--NVVLRITVVHRVRIILGRPTHCDLANA 579 (1899)
T ss_pred -ceEEEeccCCCCccCccccccccchhheeeecccceeecCCCCeEEEeec--ceEEEEccCccEEEEcCCccccccCCC
Confidence 222221 112678999999996666999976 56666654322 000010
Q ss_pred -eeeccC-----CCCCCceeeCCCCCEEEEEeCccccCC
Q 022967 257 -IFVENL-----PGGPDNIKLAPDGSFWIAILQVFISNQ 289 (289)
Q Consensus 257 -~~~~~~-----~~~p~~i~~d~~G~lwv~~~~g~i~~~ 289 (289)
.+...+ --.+..|++..+|.|||+-.++.=.||
T Consensus 580 t~~~skla~H~tl~~~r~Iavg~~G~lyvaEsD~rriNr 618 (1899)
T KOG4659|consen 580 TSSASKLADHRTLLIQRDIAVGTDGALYVAESDGRRINR 618 (1899)
T ss_pred chhhhhhhhhhhhhhhhceeecCCceEEEEeccchhhhh
Confidence 000000 024678999999999999887765554
No 25
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=98.96 E-value=2.4e-07 Score=77.18 Aligned_cols=190 Identities=15% Similarity=0.153 Sum_probs=105.5
Q ss_pred cCCcceEEEcc-CCCEE-EEecCCeEEEEecCCceEEeee--ecCcCccCeEEcCCCcEEEEeCC-CceEEEe--CCC--
Q 022967 76 LNGPEDVCVDR-NGVLY-TATRDGWIKRLHKNGTWENWKL--IGGDTLLGITTTQENEILVCDAD-KGLLKVT--EEG-- 146 (289)
Q Consensus 76 ~~~p~~l~~d~-~g~l~-v~~~~g~i~~~~~~g~~~~~~~--~~~~p~~gl~~d~~g~l~v~~~~-~~i~~~~--~~g-- 146 (289)
...+.+|++++ .+.|| |.+..+.|+.++.+|++..-.. ..+-+- ||++-.+|.+.+++.. +.++.+. .++
T Consensus 21 ~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~G~vlr~i~l~g~~D~E-gI~y~g~~~~vl~~Er~~~L~~~~~~~~~~~ 99 (248)
T PF06977_consen 21 LDELSGLTYNPDTGTLFAVQDEPGEIYELSLDGKVLRRIPLDGFGDYE-GITYLGNGRYVLSEERDQRLYIFTIDDDTTS 99 (248)
T ss_dssp -S-EEEEEEETTTTEEEEEETTTTEEEEEETT--EEEEEE-SS-SSEE-EEEE-STTEEEEEETTTTEEEEEEE----TT
T ss_pred cCCccccEEcCCCCeEEEEECCCCEEEEEcCCCCEEEEEeCCCCCCce-eEEEECCCEEEEEEcCCCcEEEEEEeccccc
Confidence 45689999998 47799 6667899999998887543322 224466 8999877777777743 5576666 222
Q ss_pred eE-----EEEeccCCccccCccceEEcCC-CcEEEeeCCCccCccccccccceecCCCEEEEEeC--CCCeEEEee----
Q 022967 147 VT-----VLASHVNGSRINLADDLIAATD-GSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDP--SLNETSILL---- 214 (289)
Q Consensus 147 ~~-----~~~~~~~~~~~~~~~~l~~~~d-G~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~--~~~~~~~~~---- 214 (289)
+. .+............-||+.|+. +++|++... .+ .+|+.++. .........
T Consensus 100 ~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~---------------~P-~~l~~~~~~~~~~~~~~~~~~~~ 163 (248)
T PF06977_consen 100 LDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKER---------------KP-KRLYEVNGFPGGFDLFVSDDQDL 163 (248)
T ss_dssp --EEEEEEEE---S---SS--EEEEEETTTTEEEEEEES---------------SS-EEEEEEESTT-SS--EEEE-HHH
T ss_pred cchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCC---------------CC-hhhEEEccccCccceeecccccc
Confidence 21 1211222222335679999996 578887432 12 35777764 212222111
Q ss_pred ----CCCCCcceEEEecCCCEEEEEeCCCCeEEEEEecCCCCcceeeeecc---C---CCCCCceeeCCCCCEEEEEeC
Q 022967 215 ----DSLFFANGVALSKDEDYLVVCETFKFRCLKYWLKGESKEQTEIFVEN---L---PGGPDNIKLAPDGSFWIAILQ 283 (289)
Q Consensus 215 ----~~~~~p~gl~~~~d~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~---~---~~~p~~i~~d~~G~lwv~~~~ 283 (289)
.....+.+++++|..+.||+-...+++|..+|.+|.-.... .+... + -..|.||++|++|+|||..-.
T Consensus 164 ~~~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d~~G~~~~~~-~L~~g~~gl~~~~~QpEGIa~d~~G~LYIvsEp 241 (248)
T PF06977_consen 164 DDDKLFVRDLSGLSYDPRTGHLLILSDESRLLLELDRQGRVVSSL-SLDRGFHGLSKDIPQPEGIAFDPDGNLYIVSEP 241 (248)
T ss_dssp H-HT--SS---EEEEETTTTEEEEEETTTTEEEEE-TT--EEEEE-E-STTGGG-SS---SEEEEEE-TT--EEEEETT
T ss_pred ccccceeccccceEEcCCCCeEEEEECCCCeEEEECCCCCEEEEE-EeCCcccCcccccCCccEEEECCCCCEEEEcCC
Confidence 13556899999999999999988899999999776522211 11110 0 126899999999999999754
No 26
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=98.94 E-value=9.5e-07 Score=75.57 Aligned_cols=182 Identities=14% Similarity=0.118 Sum_probs=111.5
Q ss_pred CCcceEEEccCCC-EEEE-ecCCeEEEEe-cCCceEEeeeecCcCccCeEEcCCCc-EEEEeCC-CceEEEe-CCC--eE
Q 022967 77 NGPEDVCVDRNGV-LYTA-TRDGWIKRLH-KNGTWENWKLIGGDTLLGITTTQENE-ILVCDAD-KGLLKVT-EEG--VT 148 (289)
Q Consensus 77 ~~p~~l~~d~~g~-l~v~-~~~g~i~~~~-~~g~~~~~~~~~~~p~~gl~~d~~g~-l~v~~~~-~~i~~~~-~~g--~~ 148 (289)
..|.+++++++|. +|+. ..++.|..++ .+++..........+. .++++++|+ +|++... ..+..+| .++ +.
T Consensus 31 ~~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~-~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~ 109 (300)
T TIGR03866 31 QRPRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSGPDPE-LFALHPNGKILYIANEDDNLVTVIDIETRKVLA 109 (300)
T ss_pred CCCCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCCCCcc-EEEECCCCCEEEEEcCCCCeEEEEECCCCeEEe
Confidence 4578899999886 5654 4678899998 4555443222234466 788988886 6666543 4577777 444 33
Q ss_pred EEEeccCCccccCccceEEcCCCcEEEeeCCCccCccccccccceecCCCEEEEEeCCCCeEEEeeCCCCCcceEEEecC
Q 022967 149 VLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANGVALSKD 228 (289)
Q Consensus 149 ~~~~~~~~~~~~~~~~l~~~~dG~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~p~gl~~~~d 228 (289)
.+.. ...+.+++++|||.+++.... ....++.+|.++++..........|..++++++
T Consensus 110 ~~~~------~~~~~~~~~~~dg~~l~~~~~----------------~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~s~d 167 (300)
T TIGR03866 110 EIPV------GVEPEGMAVSPDGKIVVNTSE----------------TTNMAHFIDTKTYEIVDNVLVDQRPRFAEFTAD 167 (300)
T ss_pred EeeC------CCCcceEEECCCCCEEEEEec----------------CCCeEEEEeCCCCeEEEEEEcCCCccEEEECCC
Confidence 2211 124678999999987665432 112355678766554332222345788999999
Q ss_pred CCEEEEEeCCCCeEEEEEecCCCCcceeeee-cc---CCCCCCceeeCCCCCE-EEEE
Q 022967 229 EDYLVVCETFKFRCLKYWLKGESKEQTEIFV-EN---LPGGPDNIKLAPDGSF-WIAI 281 (289)
Q Consensus 229 ~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~-~~---~~~~p~~i~~d~~G~l-wv~~ 281 (289)
++.||++....+.|..||+.+.+....-.+. .. ....|.+++++++|+. |++.
T Consensus 168 g~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~ 225 (300)
T TIGR03866 168 GKELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVAL 225 (300)
T ss_pred CCEEEEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEc
Confidence 9988887655688999998754321111110 00 1123567888888864 6654
No 27
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=98.93 E-value=4e-07 Score=81.41 Aligned_cols=185 Identities=18% Similarity=0.232 Sum_probs=127.0
Q ss_pred CCcceEEEccCC-CEEEEecC-CeEEEEecC-CceEEeeeec-CcCccCeEEcCCCc-EEEEeCC-CceEEEe-CCC--e
Q 022967 77 NGPEDVCVDRNG-VLYTATRD-GWIKRLHKN-GTWENWKLIG-GDTLLGITTTQENE-ILVCDAD-KGLLKVT-EEG--V 147 (289)
Q Consensus 77 ~~p~~l~~d~~g-~l~v~~~~-g~i~~~~~~-g~~~~~~~~~-~~p~~gl~~d~~g~-l~v~~~~-~~i~~~~-~~g--~ 147 (289)
..|..++++++| .+|+.... +.+..++.. ...+.+...+ ..|. ++++.+.++ +|+.+.. +.+..++ ..- .
T Consensus 31 ~~~~~v~~~~~g~~~~v~~~~~~~~~~~~~~~n~~~~~~~~g~~~p~-~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~ 109 (381)
T COG3391 31 RGPGGVAVNPDGTQVYVANSGSNDVSVIDATSNTVTQSLSVGGVYPA-GVAVNPAGNKVYVTTGDSNTVSVIDTATNTVL 109 (381)
T ss_pred CCCceeEEcCccCEEEEEeecCceeeecccccceeeeeccCCCcccc-ceeeCCCCCeEEEecCCCCeEEEEcCccccee
Confidence 479999999987 78877633 345555422 1222222223 5678 999988775 9998755 5677787 322 2
Q ss_pred EEEEeccCCccccCccceEEcCCC-cEEEeeCCCccCccccccccceecCCCEEEEEeCCCCeEEEeeCCCCCcceEEEe
Q 022967 148 TVLASHVNGSRINLADDLIAATDG-SIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANGVALS 226 (289)
Q Consensus 148 ~~~~~~~~~~~~~~~~~l~~~~dG-~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~p~gl~~~ 226 (289)
..+ ..+ ..|.+++++++| .+|+++... ..+.+..+|..+++..........|.+++++
T Consensus 110 ~~~---~vG---~~P~~~~~~~~~~~vYV~n~~~---------------~~~~vsvid~~t~~~~~~~~vG~~P~~~a~~ 168 (381)
T COG3391 110 GSI---PVG---LGPVGLAVDPDGKYVYVANAGN---------------GNNTVSVIDAATNKVTATIPVGNTPTGVAVD 168 (381)
T ss_pred eEe---eec---cCCceEEECCCCCEEEEEeccc---------------CCceEEEEeCCCCeEEEEEecCCCcceEEEC
Confidence 221 111 278899999988 799998641 2478999999877765554334468999999
Q ss_pred cCCCEEEEEeCCCCeEEEEEecCCCCcc-eeeeeccCCCCCCceeeCCCCC-EEEEEeC
Q 022967 227 KDEDYLVVCETFKFRCLKYWLKGESKEQ-TEIFVENLPGGPDNIKLAPDGS-FWIAILQ 283 (289)
Q Consensus 227 ~d~~~l~v~~~~~~~i~~~~~~~~~~~~-~~~~~~~~~~~p~~i~~d~~G~-lwv~~~~ 283 (289)
|+++.+|+++...++|..++.++..... ...........|.+++++.+|+ +||....
T Consensus 169 p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~ 227 (381)
T COG3391 169 PDGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDG 227 (381)
T ss_pred CCCCeEEEEecCCCeEEEEeCCCcceeccccccccccCCCCceEEECCCCCEEEEEecc
Confidence 9999999999999999999976654331 1110113345799999999996 8888754
No 28
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=98.89 E-value=2.1e-06 Score=73.40 Aligned_cols=177 Identities=15% Similarity=0.114 Sum_probs=108.7
Q ss_pred CCcceEEEccCCC-EEEEe-cCCeEEEEec-CCceEEeeeecCcCccCeEEcCCCcEEEEeCCC--ceEEEe-CCC-eEE
Q 022967 77 NGPEDVCVDRNGV-LYTAT-RDGWIKRLHK-NGTWENWKLIGGDTLLGITTTQENEILVCDADK--GLLKVT-EEG-VTV 149 (289)
Q Consensus 77 ~~p~~l~~d~~g~-l~v~~-~~g~i~~~~~-~g~~~~~~~~~~~p~~gl~~d~~g~l~v~~~~~--~i~~~~-~~g-~~~ 149 (289)
..+..++++++|+ +|++. .++.|..++. +++..........+. +++++++|.++++.... .+..++ .++ ...
T Consensus 73 ~~~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~-~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~ 151 (300)
T TIGR03866 73 PDPELFALHPNGKILYIANEDDNLVTVIDIETRKVLAEIPVGVEPE-GMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVD 151 (300)
T ss_pred CCccEEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeCCCCcc-eEEECCCCCEEEEEecCCCeEEEEeCCCCeEEE
Confidence 3477889999876 66665 4688999984 333222122233467 99999999876654332 355567 444 221
Q ss_pred EEeccCCccccCccceEEcCCCc-EEEeeCCCccCccccccccceecCCCEEEEEeCCCCeEEE-ee-------CCCCCc
Q 022967 150 LASHVNGSRINLADDLIAATDGS-IYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSI-LL-------DSLFFA 220 (289)
Q Consensus 150 ~~~~~~~~~~~~~~~l~~~~dG~-lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~-~~-------~~~~~p 220 (289)
... .+ ..+..+.++++|. +|++... .+.|..+|.++++... +. .....|
T Consensus 152 ~~~--~~---~~~~~~~~s~dg~~l~~~~~~-----------------~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~ 209 (300)
T TIGR03866 152 NVL--VD---QRPRFAEFTADGKELWVSSEI-----------------GGTVSVIDVATRKVIKKITFEIPGVHPEAVQP 209 (300)
T ss_pred EEE--cC---CCccEEEECCCCCEEEEEcCC-----------------CCEEEEEEcCcceeeeeeeecccccccccCCc
Confidence 111 11 2456789999996 5555321 3678888887665322 11 112346
Q ss_pred ceEEEecCCCEEEEEeCCCCeEEEEEecCCCCcceeeeeccCCCCCCceeeCCCCCE-EEE
Q 022967 221 NGVALSKDEDYLVVCETFKFRCLKYWLKGESKEQTEIFVENLPGGPDNIKLAPDGSF-WIA 280 (289)
Q Consensus 221 ~gl~~~~d~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l-wv~ 280 (289)
.+++++++++.+|++....+++.+||..+.+.. ... .....+..+++.++|.. +++
T Consensus 210 ~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~~~--~~~--~~~~~~~~~~~~~~g~~l~~~ 266 (300)
T TIGR03866 210 VGIKLTKDGKTAFVALGPANRVAVVDAKTYEVL--DYL--LVGQRVWQLAFTPDEKYLLTT 266 (300)
T ss_pred cceEECCCCCEEEEEcCCCCeEEEEECCCCcEE--EEE--EeCCCcceEEECCCCCEEEEE
Confidence 789999999999998777788999987643221 111 11245778888888864 444
No 29
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=98.88 E-value=2.4e-06 Score=72.67 Aligned_cols=190 Identities=15% Similarity=0.236 Sum_probs=116.9
Q ss_pred cCCcceEEEccCC-CEEEEe-c--CCeEEEEe--c-CCceEEeee--ecC-cCccCeEEcCCCc-EEEEeCCCce---EE
Q 022967 76 LNGPEDVCVDRNG-VLYTAT-R--DGWIKRLH--K-NGTWENWKL--IGG-DTLLGITTTQENE-ILVCDADKGL---LK 141 (289)
Q Consensus 76 ~~~p~~l~~d~~g-~l~v~~-~--~g~i~~~~--~-~g~~~~~~~--~~~-~p~~gl~~d~~g~-l~v~~~~~~i---~~ 141 (289)
+..|.-|++++++ .||+.. . .|+|..+. . +|+++.+.. ..+ .|. -+++|++|+ |++++...+. +.
T Consensus 39 ~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~-yvsvd~~g~~vf~AnY~~g~v~v~p 117 (346)
T COG2706 39 LGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPC-YVSVDEDGRFVFVANYHSGSVSVYP 117 (346)
T ss_pred cCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCe-EEEECCCCCEEEEEEccCceEEEEE
Confidence 5789999999976 689665 3 56776554 3 477765532 223 346 899999996 5555544443 33
Q ss_pred EeCCC-eEEEE---eccCC---cc--ccCccceEEcCCCc-EEEeeCCCccCccccccccceecCCCEEEEEeCCCCeEE
Q 022967 142 VTEEG-VTVLA---SHVNG---SR--INLADDLIAATDGS-IYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETS 211 (289)
Q Consensus 142 ~~~~g-~~~~~---~~~~~---~~--~~~~~~l~~~~dG~-lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~ 211 (289)
+.++| +.... ..... .+ ..++....++|+|+ |++.|-+ .-+|+.|+.+.|..+
T Consensus 118 ~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG-----------------~Dri~~y~~~dg~L~ 180 (346)
T COG2706 118 LQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLG-----------------TDRIFLYDLDDGKLT 180 (346)
T ss_pred cccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecC-----------------CceEEEEEcccCccc
Confidence 33567 33221 11111 11 12356678999995 5555533 356777776656654
Q ss_pred Ee----eCCCCCcceEEEecCCCEEEEEeCCCCeEEEEEecCC--CCcceeeeeccCC----C--CCCceeeCCCCCEEE
Q 022967 212 IL----LDSLFFANGVALSKDEDYLVVCETFKFRCLKYWLKGE--SKEQTEIFVENLP----G--GPDNIKLAPDGSFWI 279 (289)
Q Consensus 212 ~~----~~~~~~p~gl~~~~d~~~l~v~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~----~--~p~~i~~d~~G~lwv 279 (289)
.. ......|.-|+|+|+++..|+...-+++|.+|..++. ++...+... .+| + ....|.+..||++..
T Consensus 181 ~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~-tlP~dF~g~~~~aaIhis~dGrFLY 259 (346)
T COG2706 181 PADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTID-TLPEDFTGTNWAAAIHISPDGRFLY 259 (346)
T ss_pred cccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeec-cCccccCCCCceeEEEECCCCCEEE
Confidence 33 2446778999999999999999888899988877653 222222211 122 1 122377899998766
Q ss_pred EEeCc
Q 022967 280 AILQV 284 (289)
Q Consensus 280 ~~~~g 284 (289)
++..+
T Consensus 260 asNRg 264 (346)
T COG2706 260 ASNRG 264 (346)
T ss_pred EecCC
Confidence 66544
No 30
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.80 E-value=6.8e-06 Score=68.50 Aligned_cols=193 Identities=15% Similarity=0.153 Sum_probs=116.0
Q ss_pred cCCcceEEEcc-CCCEE-EEecCCeEEEEecCCceEEee--eecCcCccCeEEcCCCcEEEEeCC-CceEEEe--CCC-e
Q 022967 76 LNGPEDVCVDR-NGVLY-TATRDGWIKRLHKNGTWENWK--LIGGDTLLGITTTQENEILVCDAD-KGLLKVT--EEG-V 147 (289)
Q Consensus 76 ~~~p~~l~~d~-~g~l~-v~~~~g~i~~~~~~g~~~~~~--~~~~~p~~gl~~d~~g~l~v~~~~-~~i~~~~--~~g-~ 147 (289)
...-.++.++| +..|| +.+..-.|..++.+|++-... .....|- +|+.-.+|.+.+++.. +.++.+. ++. .
T Consensus 85 ~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE-~Ieyig~n~fvi~dER~~~l~~~~vd~~t~~ 163 (316)
T COG3204 85 TANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPE-TIEYIGGNQFVIVDERDRALYLFTVDADTTV 163 (316)
T ss_pred cccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChh-HeEEecCCEEEEEehhcceEEEEEEcCCccE
Confidence 44567789998 45677 444556788888888754332 2234566 7887666666666643 3455554 444 2
Q ss_pred EEEEe-----ccCCccccCccceEEcCC-CcEEEeeCCCccCccccccccceecCCCEEEEEeCCCCeEEEee-----CC
Q 022967 148 TVLAS-----HVNGSRINLADDLIAATD-GSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILL-----DS 216 (289)
Q Consensus 148 ~~~~~-----~~~~~~~~~~~~l~~~~d-G~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~-----~~ 216 (289)
..+.. .....+...-.|++.++. +++||+-.. ++ -+||.++........-. ..
T Consensus 164 ~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr---------------~P-~~I~~~~~~~~~l~~~~~~~~~~~ 227 (316)
T COG3204 164 ISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKER---------------NP-IGIFEVTQSPSSLSVHASLDPTAD 227 (316)
T ss_pred EeccceEEeccccCCCCcCceeeecCCCCceEEEEEcc---------------CC-cEEEEEecCCcccccccccCcccc
Confidence 22211 111112345669999994 579998643 22 35777764322221110 00
Q ss_pred ----CCCcceEEEecCCCEEEEEeCCCCeEEEEEecCCCCccee------eeeccCCCCCCceeeCCCCCEEEEEeCccc
Q 022967 217 ----LFFANGVALSKDEDYLVVCETFKFRCLKYWLKGESKEQTE------IFVENLPGGPDNIKLAPDGSFWIAILQVFI 286 (289)
Q Consensus 217 ----~~~p~gl~~~~d~~~l~v~~~~~~~i~~~~~~~~~~~~~~------~~~~~~~~~p~~i~~d~~G~lwv~~~~g~i 286 (289)
+..-.|+.+++..+.|+|-...++.|..++.+|+..+... .+-... ..+.||+.|++|+|||....+..
T Consensus 228 ~~~f~~DvSgl~~~~~~~~LLVLS~ESr~l~Evd~~G~~~~~lsL~~g~~gL~~di-pqaEGiamDd~g~lYIvSEPnlf 306 (316)
T COG3204 228 RDLFVLDVSGLEFNAITNSLLVLSDESRRLLEVDLSGEVIELLSLTKGNHGLSSDI-PQAEGIAMDDDGNLYIVSEPNLF 306 (316)
T ss_pred cceEeeccccceecCCCCcEEEEecCCceEEEEecCCCeeeeEEeccCCCCCcccC-CCcceeEECCCCCEEEEecCCcc
Confidence 2345788999888888887777789999998876322111 011122 25789999999999999866543
No 31
>KOG1214 consensus Nidogen and related basement membrane protein proteins [Cell wall/membrane/envelope biogenesis; Extracellular structures]
Probab=98.74 E-value=2.6e-07 Score=85.78 Aligned_cols=179 Identities=16% Similarity=0.106 Sum_probs=116.5
Q ss_pred cceEEEcc-CCCEE-EEecCCeEEEEecCC-ce-EEeeeecCcCccCeEEcCCC-cEEEEeCCC-ceEEEeCCC--eEEE
Q 022967 79 PEDVCVDR-NGVLY-TATRDGWIKRLHKNG-TW-ENWKLIGGDTLLGITTTQEN-EILVCDADK-GLLKVTEEG--VTVL 150 (289)
Q Consensus 79 p~~l~~d~-~g~l~-v~~~~g~i~~~~~~g-~~-~~~~~~~~~p~~gl~~d~~g-~l~v~~~~~-~i~~~~~~g--~~~~ 150 (289)
+-+|.+|- +..+| .+.....|.+...+| +. +.+......|- |||+|.-+ ++|.+|.-. .|-...-+| .+++
T Consensus 1027 iVGidfDC~e~mvyWtDv~g~SI~rasL~G~Ep~ti~n~~L~SPE-GiAVDh~~Rn~ywtDS~lD~IevA~LdG~~rkvL 1105 (1289)
T KOG1214|consen 1027 IVGIDFDCRERMVYWTDVAGRSISRASLEGAEPETIVNSGLISPE-GIAVDHIRRNMYWTDSVLDKIEVALLDGSERKVL 1105 (1289)
T ss_pred eeeeecccccceEEEeecCCCccccccccCCCCceeecccCCCcc-ceeeeeccceeeeeccccchhheeecCCceeeEE
Confidence 34456665 33333 444555566665444 22 33345567888 99999655 699998642 222222345 3444
Q ss_pred EeccCCccccCccceEEcC-CCcEEEeeCCCccCccccccccceecCCCEEEEEeCCCCeEEEe-eCCCCCcceEEEecC
Q 022967 151 ASHVNGSRINLADDLIAAT-DGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSIL-LDSLFFANGVALSKD 228 (289)
Q Consensus 151 ~~~~~~~~~~~~~~l~~~~-dG~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~-~~~~~~p~gl~~~~d 228 (289)
.. ..+..|++|++|+ .|+||++|=. +.+-.|-+.+.|+...+++ -+++.-||||.|+|-
T Consensus 1106 f~----tdLVNPR~iv~D~~rgnLYwtDWn---------------RenPkIets~mDG~NrRilin~DigLPNGLtfdpf 1166 (1289)
T KOG1214|consen 1106 FY----TDLVNPRAIVVDPIRGNLYWTDWN---------------RENPKIETSSMDGENRRILINTDIGLPNGLTFDPF 1166 (1289)
T ss_pred Ee----ecccCcceEEeecccCceeecccc---------------ccCCcceeeccCCccceEEeecccCCCCCceeCcc
Confidence 33 2345789999999 7799999832 2234566777775554444 467888999999999
Q ss_pred CCEEEEEeCCCCeEEEEEecCCCCcceeeeeccCCCCCCceeeCCCCCEEEEEe
Q 022967 229 EDYLVVCETFKFRCLKYWLKGESKEQTEIFVENLPGGPDNIKLAPDGSFWIAIL 282 (289)
Q Consensus 229 ~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~lwv~~~ 282 (289)
.+.|-|+|.+++|+.....++. +++.++ .++ .+|-+|.-+.+. +|-.+|
T Consensus 1167 s~~LCWvDAGt~rleC~~p~g~--gRR~i~-~~L-qYPF~itsy~~~-fY~TDW 1215 (1289)
T KOG1214|consen 1167 SKLLCWVDAGTKRLECTLPDGT--GRRVIQ-NNL-QYPFSITSYADH-FYHTDW 1215 (1289)
T ss_pred cceeeEEecCCcceeEecCCCC--cchhhh-hcc-cCceeeeecccc-ceeecc
Confidence 9999999999999999887764 222222 244 478888888775 666655
No 32
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=98.68 E-value=3.2e-06 Score=72.46 Aligned_cols=184 Identities=20% Similarity=0.258 Sum_probs=105.8
Q ss_pred ceEEEccCCCEEEEecC-------------CeEEEEe-cCCce-EEeeee------cCcCccCeEEcC-C-----CcEEE
Q 022967 80 EDVCVDRNGVLYTATRD-------------GWIKRLH-KNGTW-ENWKLI------GGDTLLGITTTQ-E-----NEILV 132 (289)
Q Consensus 80 ~~l~~d~~g~l~v~~~~-------------g~i~~~~-~~g~~-~~~~~~------~~~p~~gl~~d~-~-----g~l~v 132 (289)
..+.+|+.|+||+-+.. -+|+.+| .++++ ..+.-. ..... .+++|. + +.+|+
T Consensus 4 ~~v~iD~~~rLWVlD~G~~~~~~~~~~~~~pKLv~~Dl~t~~li~~~~~p~~~~~~~s~ln-dl~VD~~~~~~~~~~aYI 82 (287)
T PF03022_consen 4 QRVQIDECGRLWVLDSGRPNGLQPPKQVCPPKLVAFDLKTNQLIRRYPFPPDIAPPDSFLN-DLVVDVRDGNCDDGFAYI 82 (287)
T ss_dssp EEEEE-TTSEEEEEE-CCHSSSSTTGHTS--EEEEEETTTTCEEEEEE--CCCS-TCGGEE-EEEEECTTTTS-SEEEEE
T ss_pred cEEEEcCCCCEEEEeCCCcCCCCCCCCCCCcEEEEEECCCCcEEEEEECChHHcccccccc-eEEEEccCCCCcceEEEE
Confidence 46789999999964411 2789999 45543 333211 12233 677774 1 46999
Q ss_pred EeCC-CceEEEe-CCC--eEEEEecc-----------CCcccc---CccceEEcC---CC-cEEEeeCCCccCccccccc
Q 022967 133 CDAD-KGLLKVT-EEG--VTVLASHV-----------NGSRIN---LADDLIAAT---DG-SIYFSVASTKFGLHNWGLD 190 (289)
Q Consensus 133 ~~~~-~~i~~~~-~~g--~~~~~~~~-----------~~~~~~---~~~~l~~~~---dG-~lyv~~~~~~~~~~~~~~~ 190 (289)
+|.+ .+|+.+| .+| .+++.... .+..+. ...+++..+ || .||+...+
T Consensus 83 tD~~~~glIV~dl~~~~s~Rv~~~~~~~~p~~~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf~~ls----------- 151 (287)
T PF03022_consen 83 TDSGGPGLIVYDLATGKSWRVLHNSFSPDPDAGPFTIGGESFQWPDGIFGIALSPISPDGRWLYFHPLS----------- 151 (287)
T ss_dssp EETTTCEEEEEETTTTEEEEEETCGCTTS-SSEEEEETTEEEEETTSEEEEEE-TTSTTS-EEEEEETT-----------
T ss_pred eCCCcCcEEEEEccCCcEEEEecCCcceeccccceeccCceEecCCCccccccCCCCCCccEEEEEeCC-----------
Confidence 9987 5799999 777 33332211 111111 234556654 54 48887654
Q ss_pred cceecCCCEEEEEeCC---C----------CeEEEeeCCCCCcceEEEecCCCEEEEEeCCCCeEEEEEecCCC-Cccee
Q 022967 191 LLEAKPHGKLLKYDPS---L----------NETSILLDSLFFANGVALSKDEDYLVVCETFKFRCLKYWLKGES-KEQTE 256 (289)
Q Consensus 191 ~~~~~~~g~i~~~~~~---~----------~~~~~~~~~~~~p~gl~~~~d~~~l~v~~~~~~~i~~~~~~~~~-~~~~~ 256 (289)
...+|++..+ . ..++.+........|++++++|. ||+++...+.|.+++.+++- ..+.+
T Consensus 152 ------s~~ly~v~T~~L~~~~~~~~~~~~~~v~~lG~k~~~s~g~~~D~~G~-ly~~~~~~~aI~~w~~~~~~~~~~~~ 224 (287)
T PF03022_consen 152 ------SRKLYRVPTSVLRDPSLSDAQALASQVQDLGDKGSQSDGMAIDPNGN-LYFTDVEQNAIGCWDPDGPYTPENFE 224 (287)
T ss_dssp -------SEEEEEEHHHHCSTT--HHH-HHHT-EEEEE---SECEEEEETTTE-EEEEECCCTEEEEEETTTSB-GCCEE
T ss_pred ------CCcEEEEEHHHhhCccccccccccccceeccccCCCCceEEECCCCc-EEEecCCCCeEEEEeCCCCcCccchh
Confidence 1346665421 0 01222322224567899999776 99999999999999987632 12333
Q ss_pred eeeccCC--CCCCceeeCC--CCCEEEEEe
Q 022967 257 IFVENLP--GGPDNIKLAP--DGSFWIAIL 282 (289)
Q Consensus 257 ~~~~~~~--~~p~~i~~d~--~G~lwv~~~ 282 (289)
....... .+|+++.++. +|.||+-+.
T Consensus 225 ~l~~d~~~l~~pd~~~i~~~~~g~L~v~sn 254 (287)
T PF03022_consen 225 ILAQDPRTLQWPDGLKIDPEGDGYLWVLSN 254 (287)
T ss_dssp EEEE-CC-GSSEEEEEE-T--TS-EEEEE-
T ss_pred eeEEcCceeeccceeeeccccCceEEEEEC
Confidence 3433222 5899999999 999999875
No 33
>COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms]
Probab=98.62 E-value=6.7e-07 Score=80.28 Aligned_cols=197 Identities=18% Similarity=0.231 Sum_probs=107.3
Q ss_pred eEEEccCCCEEEEecCCeEEEEecCCc-eEEee--eecCcCccCeEEcCCCcEEEEeCCCceEEEe-CCC-eEEEEeccC
Q 022967 81 DVCVDRNGVLYTATRDGWIKRLHKNGT-WENWK--LIGGDTLLGITTTQENEILVCDADKGLLKVT-EEG-VTVLASHVN 155 (289)
Q Consensus 81 ~l~~d~~g~l~v~~~~g~i~~~~~~g~-~~~~~--~~~~~p~~gl~~d~~g~l~v~~~~~~i~~~~-~~g-~~~~~~~~~ 155 (289)
.++.|.+|+||+++..| |++.++.|. +.... .+.+... -+..|.+|++|++.. +|+++.. +++ +... ....
T Consensus 210 al~~d~qg~LWVGTdqG-v~~~e~~G~~~sn~~~~lp~~~I~-ll~qD~qG~lWiGTe-nGl~r~~l~rq~Lq~~-~~~~ 285 (671)
T COG3292 210 ALIADVQGRLWVGTDQG-VYLQEAEGWRASNWGPMLPSGNIL-LLVQDAQGELWIGTE-NGLWRTRLPRQGLQIP-LSKM 285 (671)
T ss_pred HHHHHhcCcEEEEeccc-eEEEchhhccccccCCCCcchhee-eeecccCCCEEEeec-ccceeEecCCCCcccc-cccc
Confidence 46677789999999877 888876661 21111 1123344 677789999999985 7888887 554 3322 1112
Q ss_pred CccccCccceEEcCCCcEEEeeCCCc--cCcccccc------------------------ccceecCCCEEEEEeCCCCe
Q 022967 156 GSRINLADDLIAATDGSIYFSVASTK--FGLHNWGL------------------------DLLEAKPHGKLLKYDPSLNE 209 (289)
Q Consensus 156 ~~~~~~~~~l~~~~dG~lyv~~~~~~--~~~~~~~~------------------------~~~~~~~~g~i~~~~~~~~~ 209 (289)
..+....+++..|.||.+|+++.... +...++.. .+......|-+...++.+|.
T Consensus 286 ~l~~S~vnsL~~D~dGsLWv~t~~giv~~~~a~w~~ma~in~~dG~v~~~~~~a~~ll~~~v~~~ns~g~L~van~stG~ 365 (671)
T COG3292 286 HLGVSTVNSLWLDTDGSLWVGTYGGIVRYLTADWKRMAVINDSDGGVSQYEAVAPALLSWGVRQLNSIGELMVANGSTGE 365 (671)
T ss_pred CCccccccceeeccCCCEeeeccCceEEEecchhhheeeeecCCCchhhhhccCchhcccceeeccccceEEEecCCCCc
Confidence 23445668999999999999876522 11111110 00011111222333333333
Q ss_pred EEEeeCCC--CCcceEEEecCCCEEEEEeCCCCeEEEEEecCCCCcceeeeeccCCC-CCCceeeCCCCCEEEEEeCcc
Q 022967 210 TSILLDSL--FFANGVALSKDEDYLVVCETFKFRCLKYWLKGESKEQTEIFVENLPG-GPDNIKLAPDGSFWIAILQVF 285 (289)
Q Consensus 210 ~~~~~~~~--~~p~gl~~~~d~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~-~p~~i~~d~~G~lwv~~~~g~ 285 (289)
.-...... .+..-..++.+++ +|+..+ ++++.+++....... .. -..+++. ...-|..|.++++||++..|-
T Consensus 366 ~v~sv~q~Rg~nit~~~~d~~g~-lWlgs~-q~GLsrl~n~n~~av-ld-e~agl~ss~V~aived~dnsLWIGTs~Gl 440 (671)
T COG3292 366 LVRSVHQLRGMNITTTLEDSRGR-LWLGSM-QNGLSRLDNKNEWAV-LD-EDAGLPSSEVSAIVEDPDNSLWIGTSGGL 440 (671)
T ss_pred EEEEeeeccccccchhhhccCCc-EEEEec-ccchhhhccCCcccc-cc-cccCCcccceeeeeecCCCCEEEeccCCe
Confidence 22111111 2233345555555 888854 468888875431110 00 0112222 223477899999999997653
No 34
>TIGR03032 conserved hypothetical protein TIGR03032. This protein family is uncharacterized. A number of motifs are conserved perfectly among all member sequences. The function of this protein is unknown.
Probab=98.57 E-value=8.1e-06 Score=68.97 Aligned_cols=192 Identities=12% Similarity=0.081 Sum_probs=117.0
Q ss_pred cCCcceEEEccCCCEEEEecCCeEEEE---e---c----CCceEEee-------eecCcCccCeEEcCCCcEEEEeCC-C
Q 022967 76 LNGPEDVCVDRNGVLYTATRDGWIKRL---H---K----NGTWENWK-------LIGGDTLLGITTTQENEILVCDAD-K 137 (289)
Q Consensus 76 ~~~p~~l~~d~~g~l~v~~~~g~i~~~---~---~----~g~~~~~~-------~~~~~p~~gl~~d~~g~l~v~~~~-~ 137 (289)
+..|++++..+ ++||+++... |+++ + . .+...... .+.-..+ .|++ .++.+|+.+.. +
T Consensus 48 F~r~MGl~~~~-~~l~~~t~~q-iw~f~~~~n~l~~~~~~~~~D~~yvPr~~~~TGdidiH-dia~-~~~~l~fVNT~fS 123 (335)
T TIGR03032 48 FPRPMGLAVSP-QSLTLGTRYQ-LWRFANVDNLLPAGQTHPGYDRLYVPRASYVTGDIDAH-DLAL-GAGRLLFVNTLFS 123 (335)
T ss_pred cCccceeeeeC-CeEEEEEcce-eEEcccccccccccccCCCCCeEEeeeeeeeccCcchh-heee-cCCcEEEEECcce
Confidence 78999999975 5899987644 8888 3 1 12221111 1111345 7888 56788887754 5
Q ss_pred ceEEEeCCC-eEEE-----EeccCCccccCccceEEcCCCcEEEeeCCCccCccccccccceecCCCEEEEEeCCCCeEE
Q 022967 138 GLLKVTEEG-VTVL-----ASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETS 211 (289)
Q Consensus 138 ~i~~~~~~g-~~~~-----~~~~~~~~~~~~~~l~~~~dG~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~ 211 (289)
.+..+++.. +.+. +.......-=+.|||+.....--||+.-+. .+-...=-+.+..|+++ +|..++ +
T Consensus 124 CLatl~~~~SF~P~WkPpFIs~la~eDRCHLNGlA~~~g~p~yVTa~~~----sD~~~gWR~~~~~gG~v-idv~s~--e 196 (335)
T TIGR03032 124 CLATVSPDYSFVPLWKPPFISKLAPEDRCHLNGMALDDGEPRYVTALSQ----SDVADGWREGRRDGGCV-IDIPSG--E 196 (335)
T ss_pred eEEEECCCCccccccCCccccccCccCceeecceeeeCCeEEEEEEeec----cCCcccccccccCCeEE-EEeCCC--C
Confidence 677777544 3332 222221222257899997544578775431 11110111222344443 565544 4
Q ss_pred EeeCCCCCcceEEEecCCCEEEEEeCCCCeEEEEEecCCCCcceeeeeccCCCCCCceeeCCCCCEEEEEeCcc
Q 022967 212 ILLDSLFFANGVALSKDEDYLVVCETFKFRCLKYWLKGESKEQTEIFVENLPGGPDNIKLAPDGSFWIAILQVF 285 (289)
Q Consensus 212 ~~~~~~~~p~gl~~~~d~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~lwv~~~~g~ 285 (289)
++.+++..|.+-.|. +|+ ||+.|++.+.+.++|.++. ..+.. ...+++|+||... ...++|++...+
T Consensus 197 vl~~GLsmPhSPRWh-dgr-LwvldsgtGev~~vD~~~G---~~e~V-a~vpG~~rGL~f~-G~llvVgmSk~R 263 (335)
T TIGR03032 197 VVASGLSMPHSPRWY-QGK-LWLLNSGRGELGYVDPQAG---KFQPV-AFLPGFTRGLAFA-GDFAFVGLSKLR 263 (335)
T ss_pred EEEcCccCCcCCcEe-CCe-EEEEECCCCEEEEEcCCCC---cEEEE-EECCCCCccccee-CCEEEEEecccc
Confidence 577999999998887 455 9999999999999997632 23333 3567899999998 235567776655
No 35
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=98.55 E-value=7.8e-06 Score=72.63 Aligned_cols=164 Identities=16% Similarity=0.202 Sum_probs=98.2
Q ss_pred eeEeccCCcCCcceEEEccCCC-EEEEecCCeEEEEe-cCCceEEeeeecCcCccCeEEcCCCc-EEEEeCC-CceEEEe
Q 022967 68 VTRLGEGILNGPEDVCVDRNGV-LYTATRDGWIKRLH-KNGTWENWKLIGGDTLLGITTTQENE-ILVCDAD-KGLLKVT 143 (289)
Q Consensus 68 ~~~~~~~~~~~p~~l~~d~~g~-l~v~~~~g~i~~~~-~~g~~~~~~~~~~~p~~gl~~d~~g~-l~v~~~~-~~i~~~~ 143 (289)
+.+++.+. .-+..+++.+||+ +|+.+.+|.|.++| .+++...-...+..|. |+++.+||+ +|+++.. +.+..+|
T Consensus 29 ~~~i~~~~-~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G~~~~-~i~~s~DG~~~~v~n~~~~~v~v~D 106 (369)
T PF02239_consen 29 VARIPTGG-APHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVGGNPR-GIAVSPDGKYVYVANYEPGTVSVID 106 (369)
T ss_dssp EEEEE-ST-TEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-SSEEE-EEEE--TTTEEEEEEEETTEEEEEE
T ss_pred EEEEcCCC-CceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecCCCcc-eEEEcCCCCEEEEEecCCCceeEec
Confidence 44555442 2244567788876 78888899999999 5666555556677899 999999997 6666543 5677888
Q ss_pred -CCC--eEEEEec-cCC-ccccCccceEEcCCCcEEEeeCCCccCccccccccceecCCCEEEEEeCCCCe--EEEeeCC
Q 022967 144 -EEG--VTVLASH-VNG-SRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNE--TSILLDS 216 (289)
Q Consensus 144 -~~g--~~~~~~~-~~~-~~~~~~~~l~~~~dG~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~--~~~~~~~ 216 (289)
.+. ++.+... ... ..-....+|...+....|+.... ..+.|+.+|....+ ......-
T Consensus 107 ~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lk----------------d~~~I~vVdy~d~~~~~~~~i~~ 170 (369)
T PF02239_consen 107 AETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLK----------------DTGEIWVVDYSDPKNLKVTTIKV 170 (369)
T ss_dssp TTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEET----------------TTTEEEEEETTTSSCEEEEEEE-
T ss_pred cccccceeecccccccccccCCCceeEEecCCCCEEEEEEc----------------cCCeEEEEEeccccccceeeecc
Confidence 444 4433221 111 11123446777777765654322 35789999865332 2223344
Q ss_pred CCCcceEEEecCCCEEEEEeCCCCeEEEEEecC
Q 022967 217 LFFANGVALSKDEDYLVVCETFKFRCLKYWLKG 249 (289)
Q Consensus 217 ~~~p~gl~~~~d~~~l~v~~~~~~~i~~~~~~~ 249 (289)
..+|....++|++++++++....+.|..+|...
T Consensus 171 g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~ 203 (369)
T PF02239_consen 171 GRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKT 203 (369)
T ss_dssp -TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTT
T ss_pred cccccccccCcccceeeecccccceeEEEeecc
Confidence 578899999999999999877778888888654
No 36
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=98.54 E-value=5.7e-06 Score=70.91 Aligned_cols=145 Identities=15% Similarity=0.198 Sum_probs=89.8
Q ss_pred CeEEcCCCcEEEEeCCC-------------ceEEEe-CCC--eEEEEec-cCCccccCccceEEcC-C-----CcEEEee
Q 022967 121 GITTTQENEILVCDADK-------------GLLKVT-EEG--VTVLASH-VNGSRINLADDLIAAT-D-----GSIYFSV 177 (289)
Q Consensus 121 gl~~d~~g~l~v~~~~~-------------~i~~~~-~~g--~~~~~~~-~~~~~~~~~~~l~~~~-d-----G~lyv~~ 177 (289)
++.+|+.|+|||.|.+. .|+.+| .++ ++.+.-. ..-.+....+++.+|. + +.+|++|
T Consensus 5 ~v~iD~~~rLWVlD~G~~~~~~~~~~~~~pKLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aYItD 84 (287)
T PF03022_consen 5 RVQIDECGRLWVLDSGRPNGLQPPKQVCPPKLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAYITD 84 (287)
T ss_dssp EEEE-TTSEEEEEE-CCHSSSSTTGHTS--EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEEEEE
T ss_pred EEEEcCCCCEEEEeCCCcCCCCCCCCCCCcEEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEEEeC
Confidence 78899999999998652 488889 555 4444321 1111334677898887 2 5799999
Q ss_pred CCCccCccccccccceecCCCEEEEEeCCCCeEEEeeCCC--------------------CCcceEEEec---CCCEEEE
Q 022967 178 ASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSL--------------------FFANGVALSK---DEDYLVV 234 (289)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~--------------------~~p~gl~~~~---d~~~l~v 234 (289)
.+ .++|+.||..+++...+..+. ....|++.++ ++++||+
T Consensus 85 ~~-----------------~~glIV~dl~~~~s~Rv~~~~~~~~p~~~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf 147 (287)
T PF03022_consen 85 SG-----------------GPGLIVYDLATGKSWRVLHNSFSPDPDAGPFTIGGESFQWPDGIFGIALSPISPDGRWLYF 147 (287)
T ss_dssp TT-----------------TCEEEEEETTTTEEEEEETCGCTTS-SSEEEEETTEEEEETTSEEEEEE-TTSTTS-EEEE
T ss_pred CC-----------------cCcEEEEEccCCcEEEEecCCcceeccccceeccCceEecCCCccccccCCCCCCccEEEE
Confidence 76 247888888776655443221 1245677766 8899999
Q ss_pred EeCCCCeEEEEEec---CCCCcc-------eeeeeccCCCCCCceeeCCCCCEEEEEeC
Q 022967 235 CETFKFRCLKYWLK---GESKEQ-------TEIFVENLPGGPDNIKLAPDGSFWIAILQ 283 (289)
Q Consensus 235 ~~~~~~~i~~~~~~---~~~~~~-------~~~~~~~~~~~p~~i~~d~~G~lwv~~~~ 283 (289)
.-....+++++..+ ...... .+.+. ..++..+++++|++|++|.+...
T Consensus 148 ~~lss~~ly~v~T~~L~~~~~~~~~~~~~~v~~lG-~k~~~s~g~~~D~~G~ly~~~~~ 205 (287)
T PF03022_consen 148 HPLSSRKLYRVPTSVLRDPSLSDAQALASQVQDLG-DKGSQSDGMAIDPNGNLYFTDVE 205 (287)
T ss_dssp EETT-SEEEEEEHHHHCSTT--HHH-HHHT-EEEE-E---SECEEEEETTTEEEEEECC
T ss_pred EeCCCCcEEEEEHHHhhCccccccccccccceecc-ccCCCCceEEECCCCcEEEecCC
Confidence 99888899998753 222211 12222 22245688999999999999764
No 37
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=98.50 E-value=2.4e-05 Score=72.46 Aligned_cols=186 Identities=13% Similarity=0.144 Sum_probs=122.2
Q ss_pred cCCcceEEEccCCCEE-EEecCCeEEEEe-cCCc-eEEeeeecCcCccCeEEcCCCcEEEEeCCC-ceEEEe-CCC--eE
Q 022967 76 LNGPEDVCVDRNGVLY-TATRDGWIKRLH-KNGT-WENWKLIGGDTLLGITTTQENEILVCDADK-GLLKVT-EEG--VT 148 (289)
Q Consensus 76 ~~~p~~l~~d~~g~l~-v~~~~g~i~~~~-~~g~-~~~~~~~~~~p~~gl~~d~~g~l~v~~~~~-~i~~~~-~~g--~~ 148 (289)
+..-.+++..|||.+. ++..+|+|..|+ ..|. +.+|.+...... ++.|...|+..++..-. .+..+| ... ++
T Consensus 350 ~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vTFteHts~Vt-~v~f~~~g~~llssSLDGtVRAwDlkRYrNfR 428 (893)
T KOG0291|consen 350 SDRITSLAYSPDGQLIATGAEDGKVKVWNTQSGFCFVTFTEHTSGVT-AVQFTARGNVLLSSSLDGTVRAWDLKRYRNFR 428 (893)
T ss_pred ccceeeEEECCCCcEEEeccCCCcEEEEeccCceEEEEeccCCCceE-EEEEEecCCEEEEeecCCeEEeeeecccceee
Confidence 4456678999999877 667889999998 4554 334444334444 89999999888775444 455566 554 66
Q ss_pred EEEeccCCccccCccceEEcCCCcEEEeeCCCccCccccccccceecCCCEEEEEeCCCCeEEEeeCCCCCc-ceEEEec
Q 022967 149 VLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFA-NGVALSK 227 (289)
Q Consensus 149 ~~~~~~~~~~~~~~~~l~~~~dG~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~p-~gl~~~~ 227 (289)
.+.... -.....+++||.|.|.++.... .=.|+.++.++|+..-+..|...| .+++|++
T Consensus 429 Tft~P~----p~QfscvavD~sGelV~AG~~d----------------~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~ 488 (893)
T KOG0291|consen 429 TFTSPE----PIQFSCVAVDPSGELVCAGAQD----------------SFEIFVWSVQTGQLLDILSGHEGPVSGLSFSP 488 (893)
T ss_pred eecCCC----ceeeeEEEEcCCCCEEEeeccc----------------eEEEEEEEeecCeeeehhcCCCCcceeeEEcc
Confidence 654321 1345689999999988875431 225888888889887777776666 5789999
Q ss_pred CCCEEEEEeCCCCeEEEEEecCCCCcceeeeeccCCCCCCceeeCCCC-CEEEEEeCccc
Q 022967 228 DEDYLVVCETFKFRCLKYWLKGESKEQTEIFVENLPGGPDNIKLAPDG-SFWIAILQVFI 286 (289)
Q Consensus 228 d~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G-~lwv~~~~g~i 286 (289)
++. +.++-+..++|.+|++-+.+ +..+.+. ...-..++++-++| .+-|++.+|-|
T Consensus 489 ~~~-~LaS~SWDkTVRiW~if~s~-~~vEtl~--i~sdvl~vsfrPdG~elaVaTldgqI 544 (893)
T KOG0291|consen 489 DGS-LLASGSWDKTVRIWDIFSSS-GTVETLE--IRSDVLAVSFRPDGKELAVATLDGQI 544 (893)
T ss_pred ccC-eEEeccccceEEEEEeeccC-ceeeeEe--eccceeEEEEcCCCCeEEEEEecceE
Confidence 999 66677888999999985431 1222221 11223345555666 56666665543
No 38
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=98.50 E-value=2e-05 Score=70.03 Aligned_cols=169 Identities=14% Similarity=0.190 Sum_probs=97.7
Q ss_pred CCEE-EEe-cCCeEEEEe-cCCceEEeeeecCcCccCeEEcCCCc-EEEEeCCCceEEEe-CCC--eEEEEeccCCcccc
Q 022967 88 GVLY-TAT-RDGWIKRLH-KNGTWENWKLIGGDTLLGITTTQENE-ILVCDADKGLLKVT-EEG--VTVLASHVNGSRIN 160 (289)
Q Consensus 88 g~l~-v~~-~~g~i~~~~-~~g~~~~~~~~~~~p~~gl~~d~~g~-l~v~~~~~~i~~~~-~~g--~~~~~~~~~~~~~~ 160 (289)
++|+ |.. .+|.|..+| .+.+.......++.++.++.+.+||+ +|+++....+..+| .++ +..+.. + .
T Consensus 5 ~~l~~V~~~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~---G---~ 78 (369)
T PF02239_consen 5 GNLFYVVERGSGSVAVIDGATNKVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKV---G---G 78 (369)
T ss_dssp GGEEEEEEGGGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE----S---S
T ss_pred ccEEEEEecCCCEEEEEECCCCeEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEec---C---C
Confidence 3454 555 578999998 34444333333344442678888885 89988766788888 555 443321 1 3
Q ss_pred CccceEEcCCCc-EEEeeCCCccCccccccccceecCCCEEEEEeCCCCeEEEeeC-C-------CCCcceEEEecCCCE
Q 022967 161 LADDLIAATDGS-IYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLD-S-------LFFANGVALSKDEDY 231 (289)
Q Consensus 161 ~~~~l~~~~dG~-lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~-~-------~~~p~gl~~~~d~~~ 231 (289)
.+.++++++||+ +|++... .+.+..+|.++.+...... + .....++..++....
T Consensus 79 ~~~~i~~s~DG~~~~v~n~~-----------------~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~ 141 (369)
T PF02239_consen 79 NPRGIAVSPDGKYVYVANYE-----------------PGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPE 141 (369)
T ss_dssp EEEEEEE--TTTEEEEEEEE-----------------TTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSE
T ss_pred CcceEEEcCCCCEEEEEecC-----------------CCceeEeccccccceeecccccccccccCCCceeEEecCCCCE
Confidence 578999999996 6666532 3678889987655432211 1 112346777788876
Q ss_pred EEEEeCCCCeEEEEEecCCCCcceeeeeccCCCCCCceeeCCCCCEEEEE
Q 022967 232 LVVCETFKFRCLKYWLKGESKEQTEIFVENLPGGPDNIKLAPDGSFWIAI 281 (289)
Q Consensus 232 l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~lwv~~ 281 (289)
++++-....+|+.+|....+.... ..+ ....+|.+..+|++|+++++.
T Consensus 142 fVv~lkd~~~I~vVdy~d~~~~~~-~~i-~~g~~~~D~~~dpdgry~~va 189 (369)
T PF02239_consen 142 FVVNLKDTGEIWVVDYSDPKNLKV-TTI-KVGRFPHDGGFDPDGRYFLVA 189 (369)
T ss_dssp EEEEETTTTEEEEEETTTSSCEEE-EEE-E--TTEEEEEE-TTSSEEEEE
T ss_pred EEEEEccCCeEEEEEeccccccce-eee-cccccccccccCcccceeeec
Confidence 666667778999998765321111 122 334678899999999776553
No 39
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=98.49 E-value=1e-05 Score=65.30 Aligned_cols=140 Identities=18% Similarity=0.154 Sum_probs=89.8
Q ss_pred cceEEEccCCCEEEEe-c---------CCeEEEEecCCceEEeeeecCcCccCeEEcCCC-cEEEEeCC-Cce--EEEe-
Q 022967 79 PEDVCVDRNGVLYTAT-R---------DGWIKRLHKNGTWENWKLIGGDTLLGITTTQEN-EILVCDAD-KGL--LKVT- 143 (289)
Q Consensus 79 p~~l~~d~~g~l~v~~-~---------~g~i~~~~~~g~~~~~~~~~~~p~~gl~~d~~g-~l~v~~~~-~~i--~~~~- 143 (289)
-.+--+||+|+.|.++ + .|.++++-..++++.+....+.++ ||++|.+- .+|+.|.- ..+ +.+|
T Consensus 111 ~NDgkvdP~Gryy~GtMad~~~~le~~~g~Ly~~~~~h~v~~i~~~v~IsN-gl~Wd~d~K~fY~iDsln~~V~a~dyd~ 189 (310)
T KOG4499|consen 111 LNDGKVDPDGRYYGGTMADFGDDLEPIGGELYSWLAGHQVELIWNCVGISN-GLAWDSDAKKFYYIDSLNYEVDAYDYDC 189 (310)
T ss_pred cccCccCCCCceeeeeeccccccccccccEEEEeccCCCceeeehhccCCc-cccccccCcEEEEEccCceEEeeeecCC
Confidence 3344678899999875 1 244555557778877777778899 99999765 58888754 346 5556
Q ss_pred CCC-e---EEEEec--cCCccccCccceEEcCCCcEEEeeCCCccCccccccccceecCCCEEEEEeCCCCeEEEe-eCC
Q 022967 144 EEG-V---TVLASH--VNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSIL-LDS 216 (289)
Q Consensus 144 ~~g-~---~~~~~~--~~~~~~~~~~~l~~~~dG~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~-~~~ 216 (289)
+.| + +.+.+- ........|.++++|.+|+|||+.-. .++|+++||.+|++..- .-.
T Consensus 190 ~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~n-----------------g~~V~~~dp~tGK~L~eiklP 252 (310)
T KOG4499|consen 190 PTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFN-----------------GGTVQKVDPTTGKILLEIKLP 252 (310)
T ss_pred CcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEec-----------------CcEEEEECCCCCcEEEEEEcC
Confidence 666 2 233221 12222346899999999999999754 47899999998875432 111
Q ss_pred CCCcceEEEe-cCCCEEEEEe
Q 022967 217 LFFANGVALS-KDEDYLVVCE 236 (289)
Q Consensus 217 ~~~p~gl~~~-~d~~~l~v~~ 236 (289)
.......+|. ++-+.+|++.
T Consensus 253 t~qitsccFgGkn~d~~yvT~ 273 (310)
T KOG4499|consen 253 TPQITSCCFGGKNLDILYVTT 273 (310)
T ss_pred CCceEEEEecCCCccEEEEEe
Confidence 2223444553 3334567764
No 40
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=98.47 E-value=2.4e-05 Score=70.58 Aligned_cols=166 Identities=18% Similarity=0.200 Sum_probs=97.5
Q ss_pred eEEeeeecCcCccCeEEcCCCcEEEEeCC-CceEEEeC-CC-eEEEEe--c-cCCccccCccceEEcCC-------CcEE
Q 022967 108 WENWKLIGGDTLLGITTTQENEILVCDAD-KGLLKVTE-EG-VTVLAS--H-VNGSRINLADDLIAATD-------GSIY 174 (289)
Q Consensus 108 ~~~~~~~~~~p~~gl~~d~~g~l~v~~~~-~~i~~~~~-~g-~~~~~~--~-~~~~~~~~~~~l~~~~d-------G~ly 174 (289)
.+++......|. +|++.+||++||++.. .+|++++. ++ .+.+.. . ........+.+|+++|+ +.||
T Consensus 22 ~~~va~GL~~Pw-~maflPDG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF~~~~~n~~lY 100 (454)
T TIGR03606 22 KKVLLSGLNKPW-ALLWGPDNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDFMQEKGNPYVY 100 (454)
T ss_pred EEEEECCCCCce-EEEEcCCCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCccccCCCcEEE
Confidence 345566677899 9999999999999974 67888873 34 333221 1 11112456779999876 3689
Q ss_pred EeeCCCccCccccccccceecCCCEEEEEeCCC--Ce---EEEeeCC-----CCCcceEEEecCCCEEEEEeCCC-----
Q 022967 175 FSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSL--NE---TSILLDS-----LFFANGVALSKDEDYLVVCETFK----- 239 (289)
Q Consensus 175 v~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~--~~---~~~~~~~-----~~~p~gl~~~~d~~~l~v~~~~~----- 239 (289)
++-....-. -+.....+|.|+..+. .. .+.+... ..+-..|+|+|||+ |||+--..
T Consensus 101 vsyt~~~~~--------~~~~~~~~I~R~~l~~~~~~l~~~~~Il~~lP~~~~H~GgrI~FgPDG~-LYVs~GD~g~~~~ 171 (454)
T TIGR03606 101 ISYTYKNGD--------KELPNHTKIVRYTYDKSTQTLEKPVDLLAGLPAGNDHNGGRLVFGPDGK-IYYTIGEQGRNQG 171 (454)
T ss_pred EEEeccCCC--------CCccCCcEEEEEEecCCCCccccceEEEecCCCCCCcCCceEEECCCCc-EEEEECCCCCCCc
Confidence 874321000 0000134677765431 11 1222222 23345689999997 99853221
Q ss_pred ---------------------------CeEEEEEecCCCCc--------ceeeeeccCCCCCCceeeCCCCCEEEEEeCc
Q 022967 240 ---------------------------FRCLKYWLKGESKE--------QTEIFVENLPGGPDNIKLAPDGSFWIAILQV 284 (289)
Q Consensus 240 ---------------------------~~i~~~~~~~~~~~--------~~~~~~~~~~~~p~~i~~d~~G~lwv~~~~g 284 (289)
.+|.|++.+|.-.. ..+++.-.+ -.|-++++|++|.||++.++.
T Consensus 172 ~n~~~~~~aQ~~~~~~~~~~~d~~~~~GkILRin~DGsiP~dNPf~~g~~~eIyA~G~-RNp~Gla~dp~G~Lw~~e~Gp 250 (454)
T TIGR03606 172 ANFFLPNQAQHTPTQQELNGKDYHAYMGKVLRLNLDGSIPKDNPSINGVVSHIFTYGH-RNPQGLAFTPDGTLYASEQGP 250 (454)
T ss_pred ccccCcchhccccccccccccCcccCceEEEEEcCCCCCCCCCCccCCCcceEEEEec-cccceeEECCCCCEEEEecCC
Confidence 25788887763110 123333222 247889999999999998754
No 41
>PF01731 Arylesterase: Arylesterase; InterPro: IPR002640 The serum paraoxonases/arylesterases are enzymes that catalyse the hydrolysis of the toxic metabolites of a variety of organophosphorus insecticides. The enzymes hydrolyse a broad spectrum of organophosphate substrates, including paraoxon and a number of aromatic carboxylic acid esters (e.g., phenyl acetate), and hence confer resistance to organophosphate toxicity []. Mammals have 3 distinct paraoxonase types, termed PON1-3 [, ]. In mice and humans, the PON genes are found on the same chromosome in close proximity. PON activity has been found in variety of tissues, with highest levels in liver and serum - the source of serum PON is thought to be the liver. Unlike mammals, fish and avian species lack paraoxonase activity. Human and rabbit PONs appear to have two distinct Ca2+ binding sites, one required for stability and one required for catalytic activity. The Ca2+ dependency of PONs suggests a mechanism of hydrolysis where Ca2+ acts as the electrophillic catalyst, like that proposed for phospholipase A2. The paraoxonase enzymes, PON1 and PON3, are high density lipoprotein (HDL)- associated proteins capable of preventing oxidative modification of low density lipoproteins (LPL) []. Although PON2 has oxidative properties, the enzyme does not associate with HDL. Within a given species, PON1, PON2 and PON3 share ~60% amino acid sequence identity, whereas between mammalian species particular PONs (1,2 or 3) share 79-90% identity at the amino acid level. Human PON1 and PON3 share numerous conserved phosphorylation and N-glycosylation sites; however, it is not known whether the PON proteins are modified at these sites, or whether modification at these sites is required for activity in vivo []. This family consists of arylesterases (Also known as serum paraoxonase) 3.1.1.2 from EC. These enzymes hydrolyse organophosphorus esters such as paraoxon and are found in the liver and blood. They confer resistance to organophosphate toxicity []. Human arylesterase (PON1) P27169 from SWISSPROT is associated with HDL and may protect against LDL oxidation [].; GO: 0004064 arylesterase activity
Probab=98.46 E-value=2.3e-06 Score=58.89 Aligned_cols=81 Identities=25% Similarity=0.413 Sum_probs=57.0
Q ss_pred ceEEcCCCcEEEeeCCCccCcccccc--ccceecCCCEEEEEeCCCCeEEEeeCCCCCcceEEEecCCCEEEEEeCCCCe
Q 022967 164 DLIAATDGSIYFSVASTKFGLHNWGL--DLLEAKPHGKLLKYDPSLNETSILLDSLFFANGVALSKDEDYLVVCETFKFR 241 (289)
Q Consensus 164 ~l~~~~dG~lyv~~~~~~~~~~~~~~--~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~p~gl~~~~d~~~l~v~~~~~~~ 241 (289)
+|+.-....+|++... +....++. +..-+.+-+.++.||+ ++...+++++..||||+++|+++.|||++...+.
T Consensus 2 DIvavG~~sFy~TNDh--yf~~~~l~~lE~~l~~~~~~Vvyyd~--~~~~~va~g~~~aNGI~~s~~~k~lyVa~~~~~~ 77 (86)
T PF01731_consen 2 DIVAVGPDSFYVTNDH--YFTDPFLRLLETYLGLPWGNVVYYDG--KEVKVVASGFSFANGIAISPDKKYLYVASSLAHS 77 (86)
T ss_pred CEEEECcCcEEEECch--hhCcHHHHHHHHHhcCCCceEEEEeC--CEeEEeeccCCCCceEEEcCCCCEEEEEeccCCe
Confidence 3433333367777654 22122221 2223334577888997 4677889999999999999999999999999999
Q ss_pred EEEEEec
Q 022967 242 CLKYWLK 248 (289)
Q Consensus 242 i~~~~~~ 248 (289)
|.+|...
T Consensus 78 I~vy~~~ 84 (86)
T PF01731_consen 78 IHVYKRH 84 (86)
T ss_pred EEEEEec
Confidence 9999764
No 42
>KOG1520 consensus Predicted alkaloid synthase/Surface mucin Hemomucin [General function prediction only]
Probab=98.44 E-value=2.7e-06 Score=73.50 Aligned_cols=136 Identities=14% Similarity=0.193 Sum_probs=91.5
Q ss_pred CCcceEEEccCC-CEEEEecCCeEEEEecCCceE-Eeee-ecC----cCccCeEEcCCCcEEEEeCCC------------
Q 022967 77 NGPEDVCVDRNG-VLYTATRDGWIKRLHKNGTWE-NWKL-IGG----DTLLGITTTQENEILVCDADK------------ 137 (289)
Q Consensus 77 ~~p~~l~~d~~g-~l~v~~~~g~i~~~~~~g~~~-~~~~-~~~----~p~~gl~~d~~g~l~v~~~~~------------ 137 (289)
.+|-+|+++..| +||++++.=+++++++.|... .... ..+ ..+ ++.++++|.+|++|...
T Consensus 115 GRPLGl~f~~~ggdL~VaDAYlGL~~V~p~g~~a~~l~~~~~G~~~kf~N-~ldI~~~g~vyFTDSSsk~~~rd~~~a~l 193 (376)
T KOG1520|consen 115 GRPLGIRFDKKGGDLYVADAYLGLLKVGPEGGLAELLADEAEGKPFKFLN-DLDIDPEGVVYFTDSSSKYDRRDFVFAAL 193 (376)
T ss_pred CCcceEEeccCCCeEEEEecceeeEEECCCCCcceeccccccCeeeeecC-ceeEcCCCeEEEeccccccchhheEEeee
Confidence 468899999955 999999887799999666443 2222 122 245 88899999999997532
Q ss_pred ------ceEEEe-CCC-eEEEEeccCCccccCccceEEcCCCcE-EEeeCCCccCccccccccceecCCCEEEEEeCCCC
Q 022967 138 ------GLLKVT-EEG-VTVLASHVNGSRINLADDLIAATDGSI-YFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLN 208 (289)
Q Consensus 138 ------~i~~~~-~~g-~~~~~~~~~~~~~~~~~~l~~~~dG~l-yv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~ 208 (289)
+++++| .+. .+++. ..+.++||++.++|+.+ .++... ..+|.||-.++.
T Consensus 194 ~g~~~GRl~~YD~~tK~~~VLl-----d~L~F~NGlaLS~d~sfvl~~Et~-----------------~~ri~rywi~g~ 251 (376)
T KOG1520|consen 194 EGDPTGRLFRYDPSTKVTKVLL-----DGLYFPNGLALSPDGSFVLVAETT-----------------TARIKRYWIKGP 251 (376)
T ss_pred cCCCccceEEecCcccchhhhh-----hcccccccccCCCCCCEEEEEeec-----------------cceeeeeEecCC
Confidence 233443 112 22222 24578999999999964 445433 357888776544
Q ss_pred eE---EEeeCC-CCCcceEEEecCCCEEEEEe
Q 022967 209 ET---SILLDS-LFFANGVALSKDEDYLVVCE 236 (289)
Q Consensus 209 ~~---~~~~~~-~~~p~gl~~~~d~~~l~v~~ 236 (289)
+. ++++.+ ..+|.-|..+.+|+ +||+-
T Consensus 252 k~gt~EvFa~~LPG~PDNIR~~~~G~-fWVal 282 (376)
T KOG1520|consen 252 KAGTSEVFAEGLPGYPDNIRRDSTGH-FWVAL 282 (376)
T ss_pred ccCchhhHhhcCCCCCcceeECCCCC-EEEEE
Confidence 43 777774 45788888888887 78775
No 43
>PRK04792 tolB translocation protein TolB; Provisional
Probab=98.37 E-value=0.00016 Score=66.15 Aligned_cols=149 Identities=13% Similarity=0.096 Sum_probs=91.3
Q ss_pred eEEEccCCC-EE-EEecC--CeEEEEe-cCCceEEeeeecCcCccCeEEcCCCc-EEEE-eCC--CceEEEe-CCC-eEE
Q 022967 81 DVCVDRNGV-LY-TATRD--GWIKRLH-KNGTWENWKLIGGDTLLGITTTQENE-ILVC-DAD--KGLLKVT-EEG-VTV 149 (289)
Q Consensus 81 ~l~~d~~g~-l~-v~~~~--g~i~~~~-~~g~~~~~~~~~~~p~~gl~~d~~g~-l~v~-~~~--~~i~~~~-~~g-~~~ 149 (289)
...+.|||+ |+ +...+ ..|+.++ ..|+...+....+... ..++.+||+ |+++ +.. ..|+.++ .++ .+.
T Consensus 222 ~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~lt~~~g~~~-~~~wSPDG~~La~~~~~~g~~~Iy~~dl~tg~~~~ 300 (448)
T PRK04792 222 SPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREKVTSFPGING-APRFSPDGKKLALVLSKDGQPEIYVVDIATKALTR 300 (448)
T ss_pred CceECCCCCEEEEEEecCCCcEEEEEECCCCCeEEecCCCCCcC-CeeECCCCCEEEEEEeCCCCeEEEEEECCCCCeEE
Confidence 457888886 43 44333 3688888 4455544433333344 678889986 6554 322 2488888 556 555
Q ss_pred EEeccCCccccCccceEEcCCCc-EEEeeCCCccCccccccccceecCCCEEEEEeCCCCeEEEeeCCCCCcceEEEecC
Q 022967 150 LASHVNGSRINLADDLIAATDGS-IYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANGVALSKD 228 (289)
Q Consensus 150 ~~~~~~~~~~~~~~~l~~~~dG~-lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~p~gl~~~~d 228 (289)
+.... .......+.|||+ |+++... .....||++|.++++.+.+........+.+|+||
T Consensus 301 lt~~~-----~~~~~p~wSpDG~~I~f~s~~---------------~g~~~Iy~~dl~~g~~~~Lt~~g~~~~~~~~SpD 360 (448)
T PRK04792 301 ITRHR-----AIDTEPSWHPDGKSLIFTSER---------------GGKPQIYRVNLASGKVSRLTFEGEQNLGGSITPD 360 (448)
T ss_pred CccCC-----CCccceEECCCCCEEEEEECC---------------CCCceEEEEECCCCCEEEEecCCCCCcCeeECCC
Confidence 43211 1234568899985 6665321 1234799999987776655322223345689999
Q ss_pred CCEEEEEeCC--CCeEEEEEecCC
Q 022967 229 EDYLVVCETF--KFRCLKYWLKGE 250 (289)
Q Consensus 229 ~~~l~v~~~~--~~~i~~~~~~~~ 250 (289)
|+.++++... ...|+++|+++.
T Consensus 361 G~~l~~~~~~~g~~~I~~~dl~~g 384 (448)
T PRK04792 361 GRSMIMVNRTNGKFNIARQDLETG 384 (448)
T ss_pred CCEEEEEEecCCceEEEEEECCCC
Confidence 9999887553 346788887764
No 44
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=98.36 E-value=1.8e-05 Score=69.47 Aligned_cols=157 Identities=18% Similarity=0.277 Sum_probs=92.9
Q ss_pred CcCccCeEEcCCCcEEEEeCCCceEEEeCCC-e-EEEEe--ccCCccccCccceEEcCC----CcEEEeeCCCccCcccc
Q 022967 116 GDTLLGITTTQENEILVCDADKGLLKVTEEG-V-TVLAS--HVNGSRINLADDLIAATD----GSIYFSVASTKFGLHNW 187 (289)
Q Consensus 116 ~~p~~gl~~d~~g~l~v~~~~~~i~~~~~~g-~-~~~~~--~~~~~~~~~~~~l~~~~d----G~lyv~~~~~~~~~~~~ 187 (289)
..|. +|++.+||++||++....|++++.+| . ..+.. ...........+|+++|+ +.||+.....
T Consensus 2 ~~P~-~~a~~pdG~l~v~e~~G~i~~~~~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~------- 73 (331)
T PF07995_consen 2 NNPR-SMAFLPDGRLLVAERSGRIWVVDKDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNA------- 73 (331)
T ss_dssp SSEE-EEEEETTSCEEEEETTTEEEEEETTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-------
T ss_pred CCce-EEEEeCCCcEEEEeCCceEEEEeCCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcc-------
Confidence 3577 99999999999999866788888677 5 44433 222233456789999995 8899975420
Q ss_pred ccccceecCCCEEEEEeCCCC--e---EEEe----eC---CCCCcceEEEecCCCEEEEEeC-------------CCCeE
Q 022967 188 GLDLLEAKPHGKLLKYDPSLN--E---TSIL----LD---SLFFANGVALSKDEDYLVVCET-------------FKFRC 242 (289)
Q Consensus 188 ~~~~~~~~~~g~i~~~~~~~~--~---~~~~----~~---~~~~p~gl~~~~d~~~l~v~~~-------------~~~~i 242 (289)
.........+|.|+..+.+ . .+.+ .. ......+|+|+||| .|||+-- ...+|
T Consensus 74 --~~~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG-~LYvs~G~~~~~~~~~~~~~~~G~i 150 (331)
T PF07995_consen 74 --DEDGGDNDNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDG-KLYVSVGDGGNDDNAQDPNSLRGKI 150 (331)
T ss_dssp ---TSSSSEEEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTS-EEEEEEB-TTTGGGGCSTTSSTTEE
T ss_pred --cCCCCCcceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCC-cEEEEeCCCCCcccccccccccceE
Confidence 0000011235666654333 1 1222 11 23445679999999 5998752 23578
Q ss_pred EEEEecCCCC----------cceeeeeccCCCCCCceeeCCC-CCEEEEEeCc
Q 022967 243 LKYWLKGESK----------EQTEIFVENLPGGPDNIKLAPD-GSFWIAILQV 284 (289)
Q Consensus 243 ~~~~~~~~~~----------~~~~~~~~~~~~~p~~i~~d~~-G~lwv~~~~g 284 (289)
.|++.+|... ...+.+...+ -.|-++++|+. |+||++..+.
T Consensus 151 lri~~dG~~p~dnP~~~~~~~~~~i~A~Gl-RN~~~~~~d~~tg~l~~~d~G~ 202 (331)
T PF07995_consen 151 LRIDPDGSIPADNPFVGDDGADSEIYAYGL-RNPFGLAFDPNTGRLWAADNGP 202 (331)
T ss_dssp EEEETTSSB-TTSTTTTSTTSTTTEEEE---SEEEEEEEETTTTEEEEEEE-S
T ss_pred EEecccCcCCCCCccccCCCceEEEEEeCC-CccccEEEECCCCcEEEEccCC
Confidence 9999776411 1234444333 24778999999 9999998653
No 45
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=98.35 E-value=0.00029 Score=58.63 Aligned_cols=178 Identities=16% Similarity=0.134 Sum_probs=107.3
Q ss_pred CcceEEEccCCCEEEEec-CCeEEEEecC-CceEE-eeeecCcCccCeEEcCCCcEEEEeC-CCceEEEe-CCC--eEEE
Q 022967 78 GPEDVCVDRNGVLYTATR-DGWIKRLHKN-GTWEN-WKLIGGDTLLGITTTQENEILVCDA-DKGLLKVT-EEG--VTVL 150 (289)
Q Consensus 78 ~p~~l~~d~~g~l~v~~~-~g~i~~~~~~-g~~~~-~~~~~~~p~~gl~~d~~g~l~v~~~-~~~i~~~~-~~g--~~~~ 150 (289)
...++.+.+++.++++.. ++.|..++.. ++... +........ .+.+++++.++++.. ...+..++ ..+ ...+
T Consensus 95 ~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~-~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~ 173 (289)
T cd00200 95 YVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVN-SVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATL 173 (289)
T ss_pred cEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEeccCCCcEE-EEEEcCcCCEEEEEcCCCcEEEEEccccccceeE
Confidence 466788888877776554 8999999843 44322 222223345 888988877776654 45577777 444 3333
Q ss_pred EeccCCccccCccceEEcCCCc-EEEeeCCCccCccccccccceecCCCEEEEEeCCCCeEEEee-CCCCCcceEEEecC
Q 022967 151 ASHVNGSRINLADDLIAATDGS-IYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILL-DSLFFANGVALSKD 228 (289)
Q Consensus 151 ~~~~~~~~~~~~~~l~~~~dG~-lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~-~~~~~p~gl~~~~d 228 (289)
... ......+.+.+++. ++++.. .+.+..+|...++..... ........++++++
T Consensus 174 ~~~-----~~~i~~~~~~~~~~~l~~~~~------------------~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~ 230 (289)
T cd00200 174 TGH-----TGEVNSVAFSPDGEKLLSSSS------------------DGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPD 230 (289)
T ss_pred ecC-----ccccceEEECCCcCEEEEecC------------------CCcEEEEECCCCceecchhhcCCceEEEEEcCC
Confidence 211 12467889999984 555532 366888887654443332 22335677899998
Q ss_pred CCEEEEEeCCCCeEEEEEecCCCCcceeeeeccCCCCCCceeeCCCCCEEEEEeC
Q 022967 229 EDYLVVCETFKFRCLKYWLKGESKEQTEIFVENLPGGPDNIKLAPDGSFWIAILQ 283 (289)
Q Consensus 229 ~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~lwv~~~~ 283 (289)
+. ++++....+.|..|+...... ...+. ........+..+++|.++++...
T Consensus 231 ~~-~~~~~~~~~~i~i~~~~~~~~--~~~~~-~~~~~i~~~~~~~~~~~l~~~~~ 281 (289)
T cd00200 231 GY-LLASGSEDGTIRVWDLRTGEC--VQTLS-GHTNSVTSLAWSPDGKRLASGSA 281 (289)
T ss_pred Cc-EEEEEcCCCcEEEEEcCCcee--EEEcc-ccCCcEEEEEECCCCCEEEEecC
Confidence 66 555545568899998764221 11111 22234567888888766555443
No 46
>KOG1214 consensus Nidogen and related basement membrane protein proteins [Cell wall/membrane/envelope biogenesis; Extracellular structures]
Probab=98.35 E-value=1.3e-05 Score=74.92 Aligned_cols=153 Identities=14% Similarity=0.099 Sum_probs=109.3
Q ss_pred CCcCCcceEEEcc-CCCEE-EEecCCeEEEEecCCceEEe--eeecCcCccCeEEcC-CCcEEEEeCCC---ceEEEeCC
Q 022967 74 GILNGPEDVCVDR-NGVLY-TATRDGWIKRLHKNGTWENW--KLIGGDTLLGITTTQ-ENEILVCDADK---GLLKVTEE 145 (289)
Q Consensus 74 ~~~~~p~~l~~d~-~g~l~-v~~~~g~i~~~~~~g~~~~~--~~~~~~p~~gl~~d~-~g~l~v~~~~~---~i~~~~~~ 145 (289)
..+..||+||+|- ..++| +++...+|-+...||+.++. ....-+|. +|++|+ .|+||.+|..+ .|-+.+-|
T Consensus 1065 ~~L~SPEGiAVDh~~Rn~ywtDS~lD~IevA~LdG~~rkvLf~tdLVNPR-~iv~D~~rgnLYwtDWnRenPkIets~mD 1143 (1289)
T KOG1214|consen 1065 SGLISPEGIAVDHIRRNMYWTDSVLDKIEVALLDGSERKVLFYTDLVNPR-AIVVDPIRGNLYWTDWNRENPKIETSSMD 1143 (1289)
T ss_pred ccCCCccceeeeeccceeeeeccccchhheeecCCceeeEEEeecccCcc-eEEeecccCceeeccccccCCcceeeccC
Confidence 3478999999997 55676 65566777776677876554 34456788 999996 46899998642 36666656
Q ss_pred C--eEEEEeccCCccccCccceEEcCCCc-EEEeeCCCccCccccccccceecCCCEEEEEeCCCCeEEEeeCCCCCcce
Q 022967 146 G--VTVLASHVNGSRINLADDLIAATDGS-IYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANG 222 (289)
Q Consensus 146 g--~~~~~~~~~~~~~~~~~~l~~~~dG~-lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~p~g 222 (289)
| -++++.. .+..|++|.++|..+ |-+.|.. +.++-.+.+++-..+++..++..|-+
T Consensus 1144 G~NrRilin~----DigLPNGLtfdpfs~~LCWvDAG-----------------t~rleC~~p~g~gRR~i~~~LqYPF~ 1202 (1289)
T KOG1214|consen 1144 GENRRILINT----DIGLPNGLTFDPFSKLLCWVDAG-----------------TKRLECTLPDGTGRRVIQNNLQYPFS 1202 (1289)
T ss_pred CccceEEeec----ccCCCCCceeCcccceeeEEecC-----------------CcceeEecCCCCcchhhhhcccCcee
Confidence 6 5555542 245799999999764 5555654 35677777775455566688888888
Q ss_pred EEEecCCCEEEEEeCCCCeEEEEEecCC
Q 022967 223 VALSKDEDYLVVCETFKFRCLKYWLKGE 250 (289)
Q Consensus 223 l~~~~d~~~l~v~~~~~~~i~~~~~~~~ 250 (289)
|.- +++.+|++|...++|...++.+.
T Consensus 1203 its--y~~~fY~TDWk~n~vvsv~~~~~ 1228 (1289)
T KOG1214|consen 1203 ITS--YADHFYHTDWKRNGVVSVNKHSG 1228 (1289)
T ss_pred eee--ccccceeeccccCceEEeecccc
Confidence 764 45569999999999999887654
No 47
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=98.34 E-value=0.0003 Score=58.96 Aligned_cols=148 Identities=11% Similarity=0.077 Sum_probs=94.1
Q ss_pred cceEEEccCCCEEEEe-cCCeEEEEecC-CceEEeeeecCcCccCeEEcCCCcEEEEeCCC-ceEEEe----CCC-eEEE
Q 022967 79 PEDVCVDRNGVLYTAT-RDGWIKRLHKN-GTWENWKLIGGDTLLGITTTQENEILVCDADK-GLLKVT----EEG-VTVL 150 (289)
Q Consensus 79 p~~l~~d~~g~l~v~~-~~g~i~~~~~~-g~~~~~~~~~~~p~~gl~~d~~g~l~v~~~~~-~i~~~~----~~g-~~~~ 150 (289)
-..|.+.|.+..+++. .+..|..||.. -+-.......+.|. .|+|++|-++++..+. .|..+| ..| ++.+
T Consensus 103 V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~pi--~AfDp~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf 180 (311)
T KOG1446|consen 103 VNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNLSGRPI--AAFDPEGLIFALANGSELIKLYDLRSFDKGPFTTF 180 (311)
T ss_pred EEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEecCCCcc--eeECCCCcEEEEecCCCeEEEEEecccCCCCceeE
Confidence 4456777766777544 56677777732 22233333345554 8999999877765543 566666 245 6655
Q ss_pred EeccCCccccCccceEEcCCCc-EEEeeCCCccCccccccccceecCCCEEEEEeCCCCeEEEeeC----CCCCcceEEE
Q 022967 151 ASHVNGSRINLADDLIAATDGS-IYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLD----SLFFANGVAL 225 (289)
Q Consensus 151 ~~~~~~~~~~~~~~l~~~~dG~-lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~----~~~~p~gl~~ 225 (289)
.... ......++|.+.+||. |.+++.. +.++.+|.-+|.+..-.. ....|-+-++
T Consensus 181 ~i~~--~~~~ew~~l~FS~dGK~iLlsT~~------------------s~~~~lDAf~G~~~~tfs~~~~~~~~~~~a~f 240 (311)
T KOG1446|consen 181 SITD--NDEAEWTDLEFSPDGKSILLSTNA------------------SFIYLLDAFDGTVKSTFSGYPNAGNLPLSATF 240 (311)
T ss_pred ccCC--CCccceeeeEEcCCCCEEEEEeCC------------------CcEEEEEccCCcEeeeEeeccCCCCcceeEEE
Confidence 4321 2234567999999996 6777643 668888876676443322 3344556789
Q ss_pred ecCCCEEEEEeCCCCeEEEEEecC
Q 022967 226 SKDEDYLVVCETFKFRCLKYWLKG 249 (289)
Q Consensus 226 ~~d~~~l~v~~~~~~~i~~~~~~~ 249 (289)
+||++.++.+ ...++|..|+++.
T Consensus 241 tPds~Fvl~g-s~dg~i~vw~~~t 263 (311)
T KOG1446|consen 241 TPDSKFVLSG-SDDGTIHVWNLET 263 (311)
T ss_pred CCCCcEEEEe-cCCCcEEEEEcCC
Confidence 9999965555 5668999999864
No 48
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=98.33 E-value=0.00029 Score=58.67 Aligned_cols=176 Identities=18% Similarity=0.193 Sum_probs=106.9
Q ss_pred ceEEEccCC-CEEEEecCCeEEEEec-CC-ceEEeeeecCcCccCeEEcCCCcEEEEeC-CCceEEEe-CCC--eEEEEe
Q 022967 80 EDVCVDRNG-VLYTATRDGWIKRLHK-NG-TWENWKLIGGDTLLGITTTQENEILVCDA-DKGLLKVT-EEG--VTVLAS 152 (289)
Q Consensus 80 ~~l~~d~~g-~l~v~~~~g~i~~~~~-~g-~~~~~~~~~~~p~~gl~~d~~g~l~v~~~-~~~i~~~~-~~g--~~~~~~ 152 (289)
..+.+.+++ .++++..+|.|..++. ++ ....+........ .+.+.+++.++++.. ...+..++ .++ ...+.
T Consensus 55 ~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~-~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~- 132 (289)
T cd00200 55 RDVAASADGTYLASGSSDKTIRLWDLETGECVRTLTGHTSYVS-SVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLR- 132 (289)
T ss_pred eEEEECCCCCEEEEEcCCCeEEEEEcCcccceEEEeccCCcEE-EEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEec-
Confidence 367777777 4567777899999984 33 3333333233455 888988877777765 45577777 444 33222
Q ss_pred ccCCccccCccceEEcCCCcEEEeeCCCccCccccccccceecCCCEEEEEeCCCCeEE-EeeCCCCCcceEEEecCCCE
Q 022967 153 HVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETS-ILLDSLFFANGVALSKDEDY 231 (289)
Q Consensus 153 ~~~~~~~~~~~~l~~~~dG~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~-~~~~~~~~p~gl~~~~d~~~ 231 (289)
.. ...+..+.+.+++.++++... .+.|..+|..+++.. .+.........+.++++++.
T Consensus 133 ~~----~~~i~~~~~~~~~~~l~~~~~-----------------~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 191 (289)
T cd00200 133 GH----TDWVNSVAFSPDGTFVASSSQ-----------------DGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEK 191 (289)
T ss_pred cC----CCcEEEEEEcCcCCEEEEEcC-----------------CCcEEEEEccccccceeEecCccccceEEECCCcCE
Confidence 11 124678899998876665431 356778887644432 23223335678899999987
Q ss_pred EEEEeCCCCeEEEEEecCCCCcceeeeeccCCCCCCceeeCCCCCEEEEEe
Q 022967 232 LVVCETFKFRCLKYWLKGESKEQTEIFVENLPGGPDNIKLAPDGSFWIAIL 282 (289)
Q Consensus 232 l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~lwv~~~ 282 (289)
++++.. .+.|..|+....... ..+. ........+..++++.++++..
T Consensus 192 l~~~~~-~~~i~i~d~~~~~~~--~~~~-~~~~~i~~~~~~~~~~~~~~~~ 238 (289)
T cd00200 192 LLSSSS-DGTIKLWDLSTGKCL--GTLR-GHENGVNSVAFSPDGYLLASGS 238 (289)
T ss_pred EEEecC-CCcEEEEECCCCcee--cchh-hcCCceEEEEEcCCCcEEEEEc
Confidence 887755 688999987642211 1110 1122345577777776666654
No 49
>COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms]
Probab=98.30 E-value=4.3e-06 Score=75.26 Aligned_cols=137 Identities=15% Similarity=0.164 Sum_probs=87.2
Q ss_pred CeEEcCCCcEEEEeCCCceEEEe-CCC-eEEEEeccCCccc-cCccceEEcCCCcEEEeeCCCccCccccccccceecCC
Q 022967 121 GITTTQENEILVCDADKGLLKVT-EEG-VTVLASHVNGSRI-NLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPH 197 (289)
Q Consensus 121 gl~~d~~g~l~v~~~~~~i~~~~-~~g-~~~~~~~~~~~~~-~~~~~l~~~~dG~lyv~~~~~~~~~~~~~~~~~~~~~~ 197 (289)
.+.+|.+|++||+.. .|+++++ ..| +-.+.. .++ +..+.+..|-.|++||++.
T Consensus 169 aLv~D~~g~lWvgT~-dGL~~fd~~~gkalql~s----~~~dk~I~al~~d~qg~LWVGTd------------------- 224 (671)
T COG3292 169 ALVFDANGRLWVGTP-DGLSYFDAGRGKALQLAS----PPLDKAINALIADVQGRLWVGTD------------------- 224 (671)
T ss_pred eeeeeccCcEEEecC-CcceEEccccceEEEcCC----CcchhhHHHHHHHhcCcEEEEec-------------------
Confidence 788999999999985 8899999 556 433322 222 4567888889999999874
Q ss_pred CEEEEEeCCCCeEEEeeCCCCCcceE----EEecCCCEEEEEeCCCCeEEEEEecCCCCcceeeeeccCCCCCCceeeCC
Q 022967 198 GKLLKYDPSLNETSILLDSLFFANGV----ALSKDEDYLVVCETFKFRCLKYWLKGESKEQTEIFVENLPGGPDNIKLAP 273 (289)
Q Consensus 198 g~i~~~~~~~~~~~~~~~~~~~p~gl----~~~~d~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~ 273 (289)
-+++++++.+.++.. .+...|.+. .-+.+|. +|+... +.+.|+......+...........+....+..|.
T Consensus 225 qGv~~~e~~G~~~sn--~~~~lp~~~I~ll~qD~qG~-lWiGTe--nGl~r~~l~rq~Lq~~~~~~~l~~S~vnsL~~D~ 299 (671)
T COG3292 225 QGVYLQEAEGWRASN--WGPMLPSGNILLLVQDAQGE-LWIGTE--NGLWRTRLPRQGLQIPLSKMHLGVSTVNSLWLDT 299 (671)
T ss_pred cceEEEchhhccccc--cCCCCcchheeeeecccCCC-EEEeec--ccceeEecCCCCccccccccCCccccccceeecc
Confidence 358888887533322 333444443 3344555 888743 5667666543333222211111112345688999
Q ss_pred CCCEEEEEeCccc
Q 022967 274 DGSFWIAILQVFI 286 (289)
Q Consensus 274 ~G~lwv~~~~g~i 286 (289)
+|++|+++.++.+
T Consensus 300 dGsLWv~t~~giv 312 (671)
T COG3292 300 DGSLWVGTYGGIV 312 (671)
T ss_pred CCCEeeeccCceE
Confidence 9999999987654
No 50
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=98.28 E-value=0.00072 Score=59.35 Aligned_cols=177 Identities=14% Similarity=0.140 Sum_probs=94.4
Q ss_pred CcceEEEccCCC-EEEEe-c-CCeEEEEe-cCCceEEeeeecCcCccCeEEcCCCcEEEEeCCC-ceEEEeCCC-eEEEE
Q 022967 78 GPEDVCVDRNGV-LYTAT-R-DGWIKRLH-KNGTWENWKLIGGDTLLGITTTQENEILVCDADK-GLLKVTEEG-VTVLA 151 (289)
Q Consensus 78 ~p~~l~~d~~g~-l~v~~-~-~g~i~~~~-~~g~~~~~~~~~~~p~~gl~~d~~g~l~v~~~~~-~i~~~~~~g-~~~~~ 151 (289)
.|+.+++.+||+ ||+.+ . ++.|.++| ..+++..-...++... ......+.++..|-.+. ..+.++.+| ...-.
T Consensus 106 ~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~~~~-vy~t~e~~~~~~~~Dg~~~~v~~d~~g~~~~~~ 184 (352)
T TIGR02658 106 YPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPDCYH-IFPTANDTFFMHCRDGSLAKVGYGTKGNPKIKP 184 (352)
T ss_pred ccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCCCcE-EEEecCCccEEEeecCceEEEEecCCCceEEee
Confidence 345899999886 78776 3 78899999 5565543333333233 33333333443343222 122333445 22111
Q ss_pred ecc----CCccccCccceEEcC-CCc-EEEeeCCCccCccccccccceecCCCEEEEEeCCCCeEE------EeeC----
Q 022967 152 SHV----NGSRINLADDLIAAT-DGS-IYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETS------ILLD---- 215 (289)
Q Consensus 152 ~~~----~~~~~~~~~~l~~~~-dG~-lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~------~~~~---- 215 (289)
... ...-+..| .+.+ ||+ +|++. .|.|+.+|..+.... .+..
T Consensus 185 ~~vf~~~~~~v~~rP---~~~~~dg~~~~vs~-------------------eG~V~~id~~~~~~~~~~~~~~~~~~~~~ 242 (352)
T TIGR02658 185 TEVFHPEDEYLINHP---AYSNKSGRLVWPTY-------------------TGKIFQIDLSSGDAKFLPAIEAFTEAEKA 242 (352)
T ss_pred eeeecCCccccccCC---ceEcCCCcEEEEec-------------------CCeEEEEecCCCcceecceeeeccccccc
Confidence 011 11112233 2234 665 55552 277888884332211 1111
Q ss_pred CCCCcce---EEEecCCCEEEEEe---------CCCCeEEEEEecCCCCcceeeeeccCCCCCCceeeCCCCC-EEEEE
Q 022967 216 SLFFANG---VALSKDEDYLVVCE---------TFKFRCLKYWLKGESKEQTEIFVENLPGGPDNIKLAPDGS-FWIAI 281 (289)
Q Consensus 216 ~~~~p~g---l~~~~d~~~l~v~~---------~~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~-lwv~~ 281 (289)
....|-| +++++|++++||.. ...+.|+++|....+.. .. + .....|.+|++.+||. +.+.+
T Consensus 243 ~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi--~~-i-~vG~~~~~iavS~Dgkp~lyvt 317 (352)
T TIGR02658 243 DGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRL--RK-I-ELGHEIDSINVSQDAKPLLYAL 317 (352)
T ss_pred cccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCeEE--EE-E-eCCCceeeEEECCCCCeEEEEe
Confidence 1234555 99999999999953 23368999997653221 11 1 2235788999999997 44433
No 51
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=98.27 E-value=0.00044 Score=57.66 Aligned_cols=151 Identities=20% Similarity=0.223 Sum_probs=93.4
Q ss_pred CCcceEEEccCCCEEEEe-cCCeEEEEecCC-ceEEeeeecCcCccCeEEcCCCcEEEEeCCCceEEEeCCC---eEEEE
Q 022967 77 NGPEDVCVDRNGVLYTAT-RDGWIKRLHKNG-TWENWKLIGGDTLLGITTTQENEILVCDADKGLLKVTEEG---VTVLA 151 (289)
Q Consensus 77 ~~p~~l~~d~~g~l~v~~-~~g~i~~~~~~g-~~~~~~~~~~~p~~gl~~d~~g~l~v~~~~~~i~~~~~~g---~~~~~ 151 (289)
..-|++++- +++||.-+ .++..+++|.+. +...-....+... ||+.|. ..||++|....++.+|+.. .+.+.
T Consensus 90 ~FgEGit~~-~d~l~qLTWk~~~~f~yd~~tl~~~~~~~y~~EGW-GLt~dg-~~Li~SDGS~~L~~~dP~~f~~~~~i~ 166 (264)
T PF05096_consen 90 YFGEGITIL-GDKLYQLTWKEGTGFVYDPNTLKKIGTFPYPGEGW-GLTSDG-KRLIMSDGSSRLYFLDPETFKEVRTIQ 166 (264)
T ss_dssp --EEEEEEE-TTEEEEEESSSSEEEEEETTTTEEEEEEE-SSS---EEEECS-SCEEEE-SSSEEEEE-TTT-SEEEEEE
T ss_pred ccceeEEEE-CCEEEEEEecCCeEEEEccccceEEEEEecCCcce-EEEcCC-CEEEEECCccceEEECCcccceEEEEE
Confidence 346777776 55788444 667788888542 2211122345667 999763 4799999778899999543 33332
Q ss_pred eccCCccccCccceEEcCCCcEEEeeCCCccCccccccccceecCCCEEEEEeCCCCeEEEeeC-----------C----
Q 022967 152 SHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLD-----------S---- 216 (289)
Q Consensus 152 ~~~~~~~~~~~~~l~~~~dG~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~-----------~---- 216 (289)
-...+.+....|.|..- +|.||...-. +..|.++||.+|++....+ .
T Consensus 167 V~~~g~pv~~LNELE~i-~G~IyANVW~-----------------td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~ 228 (264)
T PF05096_consen 167 VTDNGRPVSNLNELEYI-NGKIYANVWQ-----------------TDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQP 228 (264)
T ss_dssp -EETTEE---EEEEEEE-TTEEEEEETT-----------------SSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--
T ss_pred EEECCEECCCcEeEEEE-cCEEEEEeCC-----------------CCeEEEEeCCCCeEEEEEEhhHhhhcccccccccc
Confidence 23455666777888765 7899876532 3689999999998876431 1
Q ss_pred -CCCcceEEEecCCCEEEEEeCCCCeEEEEEec
Q 022967 217 -LFFANGVALSKDEDYLVVCETFKFRCLKYWLK 248 (289)
Q Consensus 217 -~~~p~gl~~~~d~~~l~v~~~~~~~i~~~~~~ 248 (289)
..--||||++++.+.+||+--.--.++++.+.
T Consensus 229 ~~dVLNGIAyd~~~~~l~vTGK~Wp~lyeV~l~ 261 (264)
T PF05096_consen 229 DDDVLNGIAYDPETDRLFVTGKLWPKLYEVKLV 261 (264)
T ss_dssp TTS-EEEEEEETTTTEEEEEETT-SEEEEEEEE
T ss_pred cCCeeEeEeEeCCCCEEEEEeCCCCceEEEEEE
Confidence 23459999999999999997666677776653
No 52
>PRK04922 tolB translocation protein TolB; Provisional
Probab=98.23 E-value=0.00053 Score=62.54 Aligned_cols=149 Identities=15% Similarity=0.137 Sum_probs=90.3
Q ss_pred eEEEccCCC-EEEEe-c--CCeEEEEe-cCCceEEeeeecCcCccCeEEcCCCc-EEEE-eCC--CceEEEe-CCC-eEE
Q 022967 81 DVCVDRNGV-LYTAT-R--DGWIKRLH-KNGTWENWKLIGGDTLLGITTTQENE-ILVC-DAD--KGLLKVT-EEG-VTV 149 (289)
Q Consensus 81 ~l~~d~~g~-l~v~~-~--~g~i~~~~-~~g~~~~~~~~~~~p~~gl~~d~~g~-l~v~-~~~--~~i~~~~-~~g-~~~ 149 (289)
+.++.++|+ |++.. . ...|++++ ..|+...+....+... ..++.+||+ |+++ +.. ..|+.++ .+| .+.
T Consensus 208 ~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~l~~~~g~~~-~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~~~~ 286 (433)
T PRK04922 208 SPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRELVASFRGING-APSFSPDGRRLALTLSRDGNPEIYVMDLGSRQLTR 286 (433)
T ss_pred cccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEEeccCCCCcc-CceECCCCCEEEEEEeCCCCceEEEEECCCCCeEE
Confidence 346777775 44333 2 34688888 4555554443334444 678999996 5444 322 2489998 566 555
Q ss_pred EEeccCCccccCccceEEcCCCc-EEEeeCCCccCccccccccceecCCCEEEEEeCCCCeEEEeeCCCCCcceEEEecC
Q 022967 150 LASHVNGSRINLADDLIAATDGS-IYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANGVALSKD 228 (289)
Q Consensus 150 ~~~~~~~~~~~~~~~l~~~~dG~-lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~p~gl~~~~d 228 (289)
+.... .......++|||+ |+++... .+...||.++.++++.+.+..........+|+||
T Consensus 287 lt~~~-----~~~~~~~~spDG~~l~f~sd~---------------~g~~~iy~~dl~~g~~~~lt~~g~~~~~~~~SpD 346 (433)
T PRK04922 287 LTNHF-----GIDTEPTWAPDGKSIYFTSDR---------------GGRPQIYRVAASGGSAERLTFQGNYNARASVSPD 346 (433)
T ss_pred CccCC-----CCccceEECCCCCEEEEEECC---------------CCCceEEEEECCCCCeEEeecCCCCccCEEECCC
Confidence 43211 1234578999996 6555321 0123699999877766555333233446899999
Q ss_pred CCEEEEEeCC--CCeEEEEEecCC
Q 022967 229 EDYLVVCETF--KFRCLKYWLKGE 250 (289)
Q Consensus 229 ~~~l~v~~~~--~~~i~~~~~~~~ 250 (289)
|+.++++... ...|+.+++++.
T Consensus 347 G~~Ia~~~~~~~~~~I~v~d~~~g 370 (433)
T PRK04922 347 GKKIAMVHGSGGQYRIAVMDLSTG 370 (433)
T ss_pred CCEEEEEECCCCceeEEEEECCCC
Confidence 9998887543 346888888654
No 53
>PRK00178 tolB translocation protein TolB; Provisional
Probab=98.16 E-value=0.00098 Score=60.70 Aligned_cols=150 Identities=13% Similarity=0.124 Sum_probs=91.5
Q ss_pred ceEEEccCCC-E-EEEecC--CeEEEEe-cCCceEEeeeecCcCccCeEEcCCCc-EEEEe-CC--CceEEEe-CCC-eE
Q 022967 80 EDVCVDRNGV-L-YTATRD--GWIKRLH-KNGTWENWKLIGGDTLLGITTTQENE-ILVCD-AD--KGLLKVT-EEG-VT 148 (289)
Q Consensus 80 ~~l~~d~~g~-l-~v~~~~--g~i~~~~-~~g~~~~~~~~~~~p~~gl~~d~~g~-l~v~~-~~--~~i~~~~-~~g-~~ 148 (289)
....+.|||+ | |++..+ ..|++++ .+|+.+.+....+... ..++.+||+ |+++. .. ..|+.++ .++ .+
T Consensus 202 ~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~l~~~~g~~~-~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~~~~~ 280 (430)
T PRK00178 202 LSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQITNFEGLNG-APAWSPDGSKLAFVLSKDGNPEIYVMDLASRQLS 280 (430)
T ss_pred eeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEEccCCCCCcC-CeEECCCCCEEEEEEccCCCceEEEEECCCCCeE
Confidence 4457778775 4 344333 4688888 4566555443334444 678989986 54443 22 2588898 556 55
Q ss_pred EEEeccCCccccCccceEEcCCCc-EEEeeCCCccCccccccccceecCCCEEEEEeCCCCeEEEeeCCCCCcceEEEec
Q 022967 149 VLASHVNGSRINLADDLIAATDGS-IYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANGVALSK 227 (289)
Q Consensus 149 ~~~~~~~~~~~~~~~~l~~~~dG~-lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~p~gl~~~~ 227 (289)
.+... . .......+.|||. |+++... .+...||+++.++++.+.+...........|+|
T Consensus 281 ~lt~~-~----~~~~~~~~spDg~~i~f~s~~---------------~g~~~iy~~d~~~g~~~~lt~~~~~~~~~~~Sp 340 (430)
T PRK00178 281 RVTNH-P----AIDTEPFWGKDGRTLYFTSDR---------------GGKPQIYKVNVNGGRAERVTFVGNYNARPRLSA 340 (430)
T ss_pred EcccC-C----CCcCCeEECCCCCEEEEEECC---------------CCCceEEEEECCCCCEEEeecCCCCccceEECC
Confidence 54321 1 1233567889985 6665422 123479999988777665543322333468999
Q ss_pred CCCEEEEEeCCC--CeEEEEEecCC
Q 022967 228 DEDYLVVCETFK--FRCLKYWLKGE 250 (289)
Q Consensus 228 d~~~l~v~~~~~--~~i~~~~~~~~ 250 (289)
|++.++++.... ..|+.+|+++.
T Consensus 341 dg~~i~~~~~~~~~~~l~~~dl~tg 365 (430)
T PRK00178 341 DGKTLVMVHRQDGNFHVAAQDLQRG 365 (430)
T ss_pred CCCEEEEEEccCCceEEEEEECCCC
Confidence 999998876532 36888887754
No 54
>PRK02889 tolB translocation protein TolB; Provisional
Probab=98.16 E-value=0.0012 Score=60.23 Aligned_cols=149 Identities=13% Similarity=0.142 Sum_probs=88.4
Q ss_pred eEEEccCCC-EEEEe-c--CCeEEEEe-cCCceEEeeeecCcCccCeEEcCCCc-EEEE-eCC--CceEEEe-CCC-eEE
Q 022967 81 DVCVDRNGV-LYTAT-R--DGWIKRLH-KNGTWENWKLIGGDTLLGITTTQENE-ILVC-DAD--KGLLKVT-EEG-VTV 149 (289)
Q Consensus 81 ~l~~d~~g~-l~v~~-~--~g~i~~~~-~~g~~~~~~~~~~~p~~gl~~d~~g~-l~v~-~~~--~~i~~~~-~~g-~~~ 149 (289)
+.++.|||+ |++.. . +..|+.++ ..|+...+....+... ..++.+||+ |+++ +.. ..||.++ ..+ .+.
T Consensus 200 ~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~l~~~~g~~~-~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~~~ 278 (427)
T PRK02889 200 SPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRVVANFKGSNS-APAWSPDGRTLAVALSRDGNSQIYTVNADGSGLRR 278 (427)
T ss_pred cceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEEeecCCCCcc-ceEECCCCCEEEEEEccCCCceEEEEECCCCCcEE
Confidence 347778875 44333 2 24588888 4566555543334445 788999985 5544 322 3588888 444 554
Q ss_pred EEeccCCccccCccceEEcCCCc-EEEeeCCCccCccccccccceecCCCEEEEEeCCCCeEEEeeCCCCCcceEEEecC
Q 022967 150 LASHVNGSRINLADDLIAATDGS-IYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANGVALSKD 228 (289)
Q Consensus 150 ~~~~~~~~~~~~~~~l~~~~dG~-lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~p~gl~~~~d 228 (289)
+... . .......+.|||+ |+++... .....||.++.++++.+.+..........+|+||
T Consensus 279 lt~~-~----~~~~~~~wSpDG~~l~f~s~~---------------~g~~~Iy~~~~~~g~~~~lt~~g~~~~~~~~SpD 338 (427)
T PRK02889 279 LTQS-S----GIDTEPFFSPDGRSIYFTSDR---------------GGAPQIYRMPASGGAAQRVTFTGSYNTSPRISPD 338 (427)
T ss_pred CCCC-C----CCCcCeEEcCCCCEEEEEecC---------------CCCcEEEEEECCCCceEEEecCCCCcCceEECCC
Confidence 4221 1 1233567999996 6654321 0224689998776665554322222335689999
Q ss_pred CCEEEEEeCC--CCeEEEEEecCC
Q 022967 229 EDYLVVCETF--KFRCLKYWLKGE 250 (289)
Q Consensus 229 ~~~l~v~~~~--~~~i~~~~~~~~ 250 (289)
|++++++... ...|+.+++++.
T Consensus 339 G~~Ia~~s~~~g~~~I~v~d~~~g 362 (427)
T PRK02889 339 GKLLAYISRVGGAFKLYVQDLATG 362 (427)
T ss_pred CCEEEEEEccCCcEEEEEEECCCC
Confidence 9988776543 246888888754
No 55
>PRK05137 tolB translocation protein TolB; Provisional
Probab=98.16 E-value=0.0016 Score=59.43 Aligned_cols=150 Identities=13% Similarity=0.056 Sum_probs=92.9
Q ss_pred ceEEEccCCC-EE-EEe--cCCeEEEEe-cCCceEEeeeecCcCccCeEEcCCCc-EEEEeC-C--CceEEEe-CCC-eE
Q 022967 80 EDVCVDRNGV-LY-TAT--RDGWIKRLH-KNGTWENWKLIGGDTLLGITTTQENE-ILVCDA-D--KGLLKVT-EEG-VT 148 (289)
Q Consensus 80 ~~l~~d~~g~-l~-v~~--~~g~i~~~~-~~g~~~~~~~~~~~p~~gl~~d~~g~-l~v~~~-~--~~i~~~~-~~g-~~ 148 (289)
....+.|||+ |+ ++. .+..|+.++ ..|+...+....+... ..++.+||+ |+++.. . ..|+.++ .++ .+
T Consensus 205 ~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~~l~~~~g~~~-~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~~ 283 (435)
T PRK05137 205 LTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRELVGNFPGMTF-APRFSPDGRKVVMSLSQGGNTDIYTMDLRSGTTT 283 (435)
T ss_pred EeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEEEeecCCCccc-CcEECCCCCEEEEEEecCCCceEEEEECCCCceE
Confidence 3457778876 43 443 245788888 4565555544344445 788999996 544432 2 3489898 556 55
Q ss_pred EEEeccCCccccCccceEEcCCCc-EEEeeCCCccCccccccccceecCCCEEEEEeCCCCeEEEeeCCCCCcceEEEec
Q 022967 149 VLASHVNGSRINLADDLIAATDGS-IYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANGVALSK 227 (289)
Q Consensus 149 ~~~~~~~~~~~~~~~~l~~~~dG~-lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~p~gl~~~~ 227 (289)
.+... . .......++|||+ |+++... .+...||++|.++++.+.+..+........|+|
T Consensus 284 ~Lt~~-~----~~~~~~~~spDG~~i~f~s~~---------------~g~~~Iy~~d~~g~~~~~lt~~~~~~~~~~~Sp 343 (435)
T PRK05137 284 RLTDS-P----AIDTSPSYSPDGSQIVFESDR---------------SGSPQLYVMNADGSNPRRISFGGGRYSTPVWSP 343 (435)
T ss_pred EccCC-C----CccCceeEcCCCCEEEEEECC---------------CCCCeEEEEECCCCCeEEeecCCCcccCeEECC
Confidence 54321 1 1234568899995 6655321 123479999988777766644333334578999
Q ss_pred CCCEEEEEeCC--CCeEEEEEecCC
Q 022967 228 DEDYLVVCETF--KFRCLKYWLKGE 250 (289)
Q Consensus 228 d~~~l~v~~~~--~~~i~~~~~~~~ 250 (289)
||+.++++... ..+|+.+++++.
T Consensus 344 dG~~ia~~~~~~~~~~i~~~d~~~~ 368 (435)
T PRK05137 344 RGDLIAFTKQGGGQFSIGVMKPDGS 368 (435)
T ss_pred CCCEEEEEEcCCCceEEEEEECCCC
Confidence 99998887543 357888887654
No 56
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=98.15 E-value=0.00066 Score=59.58 Aligned_cols=79 Identities=10% Similarity=-0.005 Sum_probs=57.9
Q ss_pred ceEEcCCC-cEEEeeCCCccCccccccccceecCCCEEEEEeCCCCeEEEeeCCCCCcceEEEecCCC-EEEEEeCCCCe
Q 022967 164 DLIAATDG-SIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANGVALSKDED-YLVVCETFKFR 241 (289)
Q Consensus 164 ~l~~~~dG-~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~p~gl~~~~d~~-~l~v~~~~~~~ 241 (289)
.+++.+|| ++||.......+. ...+.+.|+.+|..+++......-...|.++++++|++ .||+++...+.
T Consensus 252 ~ia~~~dg~~lyV~~~~~~~~t--------hk~~~~~V~ViD~~t~kvi~~i~vG~~~~~iavS~Dgkp~lyvtn~~s~~ 323 (352)
T TIGR02658 252 QVAYHRARDRIYLLADQRAKWT--------HKTASRFLFVVDAKTGKRLRKIELGHEIDSINVSQDAKPLLYALSTGDKT 323 (352)
T ss_pred eEEEcCCCCEEEEEecCCcccc--------ccCCCCEEEEEECCCCeEEEEEeCCCceeeEEECCCCCeEEEEeCCCCCc
Confidence 39999986 6998532100000 00133579999999888766655567899999999999 99999988899
Q ss_pred EEEEEecCC
Q 022967 242 CLKYWLKGE 250 (289)
Q Consensus 242 i~~~~~~~~ 250 (289)
|.++|....
T Consensus 324 VsViD~~t~ 332 (352)
T TIGR02658 324 LYIFDAETG 332 (352)
T ss_pred EEEEECcCC
Confidence 999997654
No 57
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=98.14 E-value=0.00078 Score=60.30 Aligned_cols=179 Identities=16% Similarity=0.247 Sum_probs=112.6
Q ss_pred CcceEEEccCCC-EEEEecCCeEEEEe-cCCceEEee-e-ecCcCccCeEEcCCCcEEEEeCCCceEEEe-C-CC-eEEE
Q 022967 78 GPEDVCVDRNGV-LYTATRDGWIKRLH-KNGTWENWK-L-IGGDTLLGITTTQENEILVCDADKGLLKVT-E-EG-VTVL 150 (289)
Q Consensus 78 ~p~~l~~d~~g~-l~v~~~~g~i~~~~-~~g~~~~~~-~-~~~~p~~gl~~d~~g~l~v~~~~~~i~~~~-~-~g-~~~~ 150 (289)
.-.++.+.++|. ||.++.+|.|..|+ ..|....+. . ...... +|+....+.++.+..+..+.+++ . +| -...
T Consensus 322 ~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~-~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~ 400 (603)
T KOG0318|consen 322 SITALTVSPDGKTIYSGSYDGHINSWDSGSGTSDRLAGKGHTNQIK-GMAASESGELFTIGWDDTLRVISLKDNGYTKSE 400 (603)
T ss_pred ceeEEEEcCCCCEEEeeccCceEEEEecCCccccccccccccceEE-EEeecCCCcEEEEecCCeEEEEecccCcccccc
Confidence 345577777654 77888999999998 445444332 1 123344 88888778899888777788777 3 33 2211
Q ss_pred EeccCCccccCccceEEcCCCcEEEeeCCCccCccccccccceecCCCEEEEEeCCCCeEEEeeCCCCCcceEEEecCCC
Q 022967 151 ASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANGVALSKDED 230 (289)
Q Consensus 151 ~~~~~~~~~~~~~~l~~~~dG~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~p~gl~~~~d~~ 230 (289)
..+.. ..|.++++.+||.+.+... ...|..+.-.++ .... .-...+..++++|++.
T Consensus 401 ~~~lg----~QP~~lav~~d~~~avv~~------------------~~~iv~l~~~~~-~~~~-~~~y~~s~vAv~~~~~ 456 (603)
T KOG0318|consen 401 VVKLG----SQPKGLAVLSDGGTAVVAC------------------ISDIVLLQDQTK-VSSI-PIGYESSAVAVSPDGS 456 (603)
T ss_pred eeecC----CCceeEEEcCCCCEEEEEe------------------cCcEEEEecCCc-ceee-ccccccceEEEcCCCC
Confidence 11112 4677999999985443321 134555543322 2222 3446788999999999
Q ss_pred EEEEEeCCCCeEEEEEecCCCCcceeeeeccCCCCCCceeeCCCCCEEEEEeC
Q 022967 231 YLVVCETFKFRCLKYWLKGESKEQTEIFVENLPGGPDNIKLAPDGSFWIAILQ 283 (289)
Q Consensus 231 ~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~lwv~~~~ 283 (289)
.+.|.-. ...|..|.+.|..+....... ...+-+..++..+||.+++++..
T Consensus 457 ~vaVGG~-Dgkvhvysl~g~~l~ee~~~~-~h~a~iT~vaySpd~~yla~~Da 507 (603)
T KOG0318|consen 457 EVAVGGQ-DGKVHVYSLSGDELKEEAKLL-EHRAAITDVAYSPDGAYLAAGDA 507 (603)
T ss_pred EEEEecc-cceEEEEEecCCcccceeeee-cccCCceEEEECCCCcEEEEecc
Confidence 7777643 467999999886553322222 33355777888899888777643
No 58
>PRK03629 tolB translocation protein TolB; Provisional
Probab=98.14 E-value=0.0013 Score=59.96 Aligned_cols=150 Identities=8% Similarity=0.007 Sum_probs=92.0
Q ss_pred ceEEEccCCCEE--EEe--cCCeEEEEe-cCCceEEeeeecCcCccCeEEcCCCc-EEEEeCC---CceEEEe-CCC-eE
Q 022967 80 EDVCVDRNGVLY--TAT--RDGWIKRLH-KNGTWENWKLIGGDTLLGITTTQENE-ILVCDAD---KGLLKVT-EEG-VT 148 (289)
Q Consensus 80 ~~l~~d~~g~l~--v~~--~~g~i~~~~-~~g~~~~~~~~~~~p~~gl~~d~~g~-l~v~~~~---~~i~~~~-~~g-~~ 148 (289)
.+.++.|||+.. +.. .+..|+.++ ..|+.+.+....+... ..++.+||+ |+++... ..|+.++ ++| .+
T Consensus 202 ~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~~~~~~~~-~~~~SPDG~~La~~~~~~g~~~I~~~d~~tg~~~ 280 (429)
T PRK03629 202 MSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRHNG-APAFSPDGSKLAFALSKTGSLNLYVMDLASGQIR 280 (429)
T ss_pred eeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEccCCCCCcC-CeEECCCCCEEEEEEcCCCCcEEEEEECCCCCEE
Confidence 346888888633 333 234677777 4555554443334444 788999996 5554222 2488888 666 65
Q ss_pred EEEeccCCccccCccceEEcCCCc-EEEeeCCCccCccccccccceecCCCEEEEEeCCCCeEEEeeCCCCCcceEEEec
Q 022967 149 VLASHVNGSRINLADDLIAATDGS-IYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANGVALSK 227 (289)
Q Consensus 149 ~~~~~~~~~~~~~~~~l~~~~dG~-lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~p~gl~~~~ 227 (289)
.+.... .......+.|||+ |+++... .....||+++.++++.+.+...........|+|
T Consensus 281 ~lt~~~-----~~~~~~~wSPDG~~I~f~s~~---------------~g~~~Iy~~d~~~g~~~~lt~~~~~~~~~~~Sp 340 (429)
T PRK03629 281 QVTDGR-----SNNTEPTWFPDSQNLAYTSDQ---------------AGRPQVYKVNINGGAPQRITWEGSQNQDADVSS 340 (429)
T ss_pred EccCCC-----CCcCceEECCCCCEEEEEeCC---------------CCCceEEEEECCCCCeEEeecCCCCccCEEECC
Confidence 553321 1234678999996 5554321 012379999998777666543333345678999
Q ss_pred CCCEEEEEeCC--CCeEEEEEecCC
Q 022967 228 DEDYLVVCETF--KFRCLKYWLKGE 250 (289)
Q Consensus 228 d~~~l~v~~~~--~~~i~~~~~~~~ 250 (289)
||++++++... ...|+.+|+++.
T Consensus 341 DG~~Ia~~~~~~g~~~I~~~dl~~g 365 (429)
T PRK03629 341 DGKFMVMVSSNGGQQHIAKQDLATG 365 (429)
T ss_pred CCCEEEEEEccCCCceEEEEECCCC
Confidence 99988776543 346888887654
No 59
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=98.13 E-value=0.00037 Score=58.22 Aligned_cols=159 Identities=18% Similarity=0.195 Sum_probs=85.5
Q ss_pred eeEeccCCcCCcceEEEccCCCEEEEe-cCCeEEEEec--CCc---e---EEeeee----cCcCccCeEEcCC-CcEEEE
Q 022967 68 VTRLGEGILNGPEDVCVDRNGVLYTAT-RDGWIKRLHK--NGT---W---ENWKLI----GGDTLLGITTTQE-NEILVC 133 (289)
Q Consensus 68 ~~~~~~~~~~~p~~l~~d~~g~l~v~~-~~g~i~~~~~--~g~---~---~~~~~~----~~~p~~gl~~d~~-g~l~v~ 133 (289)
+++++...+..+|+|+.-.+|.+++.+ .+++++.++. ++. . ..+... .+.-..||++|+. ++||++
T Consensus 56 lr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~ 135 (248)
T PF06977_consen 56 LRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVA 135 (248)
T ss_dssp EEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEE
T ss_pred EEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEEEeccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEE
Confidence 344554557889999998777666655 6788888872 221 1 122111 1111238999975 568887
Q ss_pred eCC--CceEEEeC--CC--eEEEEe-cc--CCccccCccceEEcC-CCcEEEeeCCCccCccccccccceecCCCEEEEE
Q 022967 134 DAD--KGLLKVTE--EG--VTVLAS-HV--NGSRINLADDLIAAT-DGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKY 203 (289)
Q Consensus 134 ~~~--~~i~~~~~--~g--~~~~~~-~~--~~~~~~~~~~l~~~~-dG~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~ 203 (289)
-.. .+++.++. .+ ...... .. ......-+.++.++| .|++|+-... ...|+.+
T Consensus 136 kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S~l~~~p~t~~lliLS~e-----------------s~~l~~~ 198 (248)
T PF06977_consen 136 KERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDLSGLSYDPRTGHLLILSDE-----------------SRLLLEL 198 (248)
T ss_dssp EESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS---EEEEETTTTEEEEEETT-----------------TTEEEEE
T ss_pred eCCCChhhEEEccccCccceeeccccccccccceeccccceEEcCCCCeEEEEECC-----------------CCeEEEE
Confidence 533 35777773 23 332222 11 122334578999998 4788886543 3678999
Q ss_pred eCCCCeEEEe--eC-------CCCCcceEEEecCCCEEEEEeCCCCeEEEE
Q 022967 204 DPSLNETSIL--LD-------SLFFANGVALSKDEDYLVVCETFKFRCLKY 245 (289)
Q Consensus 204 ~~~~~~~~~~--~~-------~~~~p~gl~~~~d~~~l~v~~~~~~~i~~~ 245 (289)
|.++.-...+ .. .+..|-||+++++|+ |||+.- -+..|+|
T Consensus 199 d~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~-LYIvsE-pNlfy~f 247 (248)
T PF06977_consen 199 DRQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGN-LYIVSE-PNLFYRF 247 (248)
T ss_dssp -TT--EEEEEE-STTGGG-SS---SEEEEEE-TT---EEEEET-TTEEEEE
T ss_pred CCCCCEEEEEEeCCcccCcccccCCccEEEECCCCC-EEEEcC-CceEEEe
Confidence 9774322222 12 246789999999987 898865 4788877
No 60
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.12 E-value=0.0025 Score=52.71 Aligned_cols=176 Identities=18% Similarity=0.189 Sum_probs=95.8
Q ss_pred EEccCCCEEEEecCCeEEEEe-cCCceEEeeeecCcCccCeEEcCCCcEEEEeCCCceEEEe-CCC-eEEEE-ecc-CCc
Q 022967 83 CVDRNGVLYTATRDGWIKRLH-KNGTWENWKLIGGDTLLGITTTQENEILVCDADKGLLKVT-EEG-VTVLA-SHV-NGS 157 (289)
Q Consensus 83 ~~d~~g~l~v~~~~g~i~~~~-~~g~~~~~~~~~~~p~~gl~~d~~g~l~v~~~~~~i~~~~-~~g-~~~~~-~~~-~~~ 157 (289)
++..++.+|+++.++.|+.++ .+|+...-....+... ......++.+|+....+.++.+| .+| +..-. ... +..
T Consensus 32 ~~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~~~-~~~~~~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~ 110 (238)
T PF13360_consen 32 AVPDGGRVYVASGDGNLYALDAKTGKVLWRFDLPGPIS-GAPVVDGGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPA 110 (238)
T ss_dssp EEEETTEEEEEETTSEEEEEETTTSEEEEEEECSSCGG-SGEEEETTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTC
T ss_pred EEEeCCEEEEEcCCCEEEEEECCCCCEEEEeecccccc-ceeeecccccccccceeeeEecccCCcceeeeecccccccc
Confidence 454588999998999999999 4887543333222222 33233467899988656799999 888 43321 211 111
Q ss_pred cccCccceEEcCCCcEEEeeCCCccCccccccccceecCCCEEEEEeCCCCeEEEeeCCCCCc------------ceEEE
Q 022967 158 RINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFA------------NGVAL 225 (289)
Q Consensus 158 ~~~~~~~l~~~~dG~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~p------------~gl~~ 225 (289)
.........++ ++.+|+... .+.|+.+|+++|+..--... ..+ .+-.+
T Consensus 111 ~~~~~~~~~~~-~~~~~~~~~------------------~g~l~~~d~~tG~~~w~~~~-~~~~~~~~~~~~~~~~~~~~ 170 (238)
T PF13360_consen 111 GVRSSSSPAVD-GDRLYVGTS------------------SGKLVALDPKTGKLLWKYPV-GEPRGSSPISSFSDINGSPV 170 (238)
T ss_dssp STB--SEEEEE-TTEEEEEET------------------CSEEEEEETTTTEEEEEEES-STT-SS--EEEETTEEEEEE
T ss_pred ccccccCceEe-cCEEEEEec------------------cCcEEEEecCCCcEEEEeec-CCCCCCcceeeecccccceE
Confidence 22223334444 456777753 37899999988876332211 111 11122
Q ss_pred ecCCCEEEEEeCCCCeEEEEEecCCCCcceeeeeccCCCCCCceeeCCCCCEEEEEeCccc
Q 022967 226 SKDEDYLVVCETFKFRCLKYWLKGESKEQTEIFVENLPGGPDNIKLAPDGSFWIAILQVFI 286 (289)
Q Consensus 226 ~~d~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~lwv~~~~g~i 286 (289)
..++ .+|++... +++..+|..+... ..... ...+..+..-.++.+|+++..+.+
T Consensus 171 ~~~~-~v~~~~~~-g~~~~~d~~tg~~----~w~~~-~~~~~~~~~~~~~~l~~~~~~~~l 224 (238)
T PF13360_consen 171 ISDG-RVYVSSGD-GRVVAVDLATGEK----LWSKP-ISGIYSLPSVDGGTLYVTSSDGRL 224 (238)
T ss_dssp CCTT-EEEEECCT-SSEEEEETTTTEE----EEEEC-SS-ECECEECCCTEEEEEETTTEE
T ss_pred EECC-EEEEEcCC-CeEEEEECCCCCE----EEEec-CCCccCCceeeCCEEEEEeCCCEE
Confidence 2234 68888654 4466667654321 12111 122333334455678887744443
No 61
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=98.12 E-value=0.00084 Score=54.83 Aligned_cols=182 Identities=14% Similarity=0.103 Sum_probs=103.9
Q ss_pred CCcceEEEccCCC-EEEEecCCeEEEEe-cCCceEEeeeecCcCccCeEEcCC-CcEEEEeCCCceEEEe-C-CC-eEEE
Q 022967 77 NGPEDVCVDRNGV-LYTATRDGWIKRLH-KNGTWENWKLIGGDTLLGITTTQE-NEILVCDADKGLLKVT-E-EG-VTVL 150 (289)
Q Consensus 77 ~~p~~l~~d~~g~-l~v~~~~g~i~~~~-~~g~~~~~~~~~~~p~~gl~~d~~-g~l~v~~~~~~i~~~~-~-~g-~~~~ 150 (289)
..-..+.+-.+|+ +|.+..+|.+..+| ..-........ ..|.+.+..+++ ++|+++|....|..+| . +- ...+
T Consensus 84 kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~~~~qR~~~~-~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~l 162 (311)
T KOG0315|consen 84 KNVTAVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQRNYQH-NSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHEL 162 (311)
T ss_pred CceEEEEEeecCeEEEecCCCceEEEEeccCcccchhccC-CCCcceEEecCCcceEEeecCCCcEEEEEccCCcccccc
Confidence 3345567767777 56777888877777 22222222221 244437777764 5788888666688888 3 33 4444
Q ss_pred EeccCCccccCccceEEcCCCcEEEeeCCCccCccccccccceecCCCEEEEEeCCCCeE-EEe------eCCCCCcceE
Q 022967 151 ASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNET-SIL------LDSLFFANGV 223 (289)
Q Consensus 151 ~~~~~~~~~~~~~~l~~~~dG~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~-~~~------~~~~~~p~gl 223 (289)
+++. ......+.+.+||.+.++... .|.+|..+.-++.. ..+ ...-...-..
T Consensus 163 iPe~----~~~i~sl~v~~dgsml~a~nn-----------------kG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C 221 (311)
T KOG0315|consen 163 IPED----DTSIQSLTVMPDGSMLAAANN-----------------KGNCYVWRLLNHQTASELEPVHKFQAHNGHILRC 221 (311)
T ss_pred CCCC----CcceeeEEEcCCCcEEEEecC-----------------CccEEEEEccCCCccccceEhhheecccceEEEE
Confidence 4322 246789999999988776543 35666665433221 111 1111222334
Q ss_pred EEecCCCEEEEEeCCCCeEEEEEecCCCCcceeeeeccCCCCCCceeeCCCCCEEEEEeC
Q 022967 224 ALSKDEDYLVVCETFKFRCLKYWLKGESKEQTEIFVENLPGGPDNIKLAPDGSFWIAILQ 283 (289)
Q Consensus 224 ~~~~d~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~lwv~~~~ 283 (289)
.++||+++ +++.+....+++|+.++- + ..+...+......-+-++..||.+.|...+
T Consensus 222 ~lSPd~k~-lat~ssdktv~iwn~~~~-~-kle~~l~gh~rWvWdc~FS~dg~YlvTass 278 (311)
T KOG0315|consen 222 LLSPDVKY-LATCSSDKTVKIWNTDDF-F-KLELVLTGHQRWVWDCAFSADGEYLVTASS 278 (311)
T ss_pred EECCCCcE-EEeecCCceEEEEecCCc-e-eeEEEeecCCceEEeeeeccCccEEEecCC
Confidence 68999995 455566788999987764 2 222222222233444556667766665543
No 62
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=98.05 E-value=0.0059 Score=54.53 Aligned_cols=139 Identities=15% Similarity=0.170 Sum_probs=77.7
Q ss_pred EEccCCCEEEEecCCeEEEEe-cCCceEEeeeecCcCccCeEEcCCCcEEEEeCCCceEEEe-CCC-eEEEEeccCCccc
Q 022967 83 CVDRNGVLYTATRDGWIKRLH-KNGTWENWKLIGGDTLLGITTTQENEILVCDADKGLLKVT-EEG-VTVLASHVNGSRI 159 (289)
Q Consensus 83 ~~d~~g~l~v~~~~g~i~~~~-~~g~~~~~~~~~~~p~~gl~~d~~g~l~v~~~~~~i~~~~-~~g-~~~~~~~~~~~~~ 159 (289)
+++ ++.+|+++.+|.|+.++ .+|+...-.........+.+.+ ++.+|++.....++.+| .+| +..-. ...+...
T Consensus 62 ~v~-~~~v~v~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~p~v~-~~~v~v~~~~g~l~ald~~tG~~~W~~-~~~~~~~ 138 (377)
T TIGR03300 62 AVA-GGKVYAADADGTVVALDAETGKRLWRVDLDERLSGGVGAD-GGLVFVGTEKGEVIALDAEDGKELWRA-KLSSEVL 138 (377)
T ss_pred EEE-CCEEEEECCCCeEEEEEccCCcEeeeecCCCCcccceEEc-CCEEEEEcCCCEEEEEECCCCcEeeee-ccCceee
Confidence 444 67999999899999999 6787543222222222155564 67899987666799999 678 43221 1222111
Q ss_pred cCccceEEcCCCcEEEeeCCCccCccccccccceecCCCEEEEEeCCCCeEEEeeCCCC------CcceEEEecCCCEEE
Q 022967 160 NLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLF------FANGVALSKDEDYLV 233 (289)
Q Consensus 160 ~~~~~l~~~~dG~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~------~p~gl~~~~d~~~l~ 233 (289)
. ...+ .++.+|+... .+.|+.+|+++|+..--..... ......+. + +.+|
T Consensus 139 ~---~p~v-~~~~v~v~~~------------------~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~~-~-~~v~ 194 (377)
T TIGR03300 139 S---PPLV-ANGLVVVRTN------------------DGRLTALDAATGERLWTYSRVTPALTLRGSASPVIA-D-GGVL 194 (377)
T ss_pred c---CCEE-ECCEEEEECC------------------CCeEEEEEcCCCceeeEEccCCCceeecCCCCCEEE-C-CEEE
Confidence 1 1122 2567777643 3678999987776432111100 00111222 2 3466
Q ss_pred EEeCCCCeEEEEEecC
Q 022967 234 VCETFKFRCLKYWLKG 249 (289)
Q Consensus 234 v~~~~~~~i~~~~~~~ 249 (289)
+. .....++.+|..+
T Consensus 195 ~~-~~~g~v~ald~~t 209 (377)
T TIGR03300 195 VG-FAGGKLVALDLQT 209 (377)
T ss_pred EE-CCCCEEEEEEccC
Confidence 65 3456788888754
No 63
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.05 E-value=0.0019 Score=55.13 Aligned_cols=157 Identities=13% Similarity=0.137 Sum_probs=93.0
Q ss_pred EEEccCCCE-EEEe-----cCCeEEEEecCCc---eEEeeeecCcCccCeEEcCCC-cEEEEeCC---C-----------
Q 022967 82 VCVDRNGVL-YTAT-----RDGWIKRLHKNGT---WENWKLIGGDTLLGITTTQEN-EILVCDAD---K----------- 137 (289)
Q Consensus 82 l~~d~~g~l-~v~~-----~~g~i~~~~~~g~---~~~~~~~~~~p~~gl~~d~~g-~l~v~~~~---~----------- 137 (289)
-++.+||++ |++. ..|.|-++|.... +.+|...+-.|+ -|.+.+|| .|.|++.+ +
T Consensus 56 g~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~~~ri~E~~s~GIGPH-el~l~pDG~tLvVANGGI~Thpd~GR~kLNl~ 134 (305)
T PF07433_consen 56 GVFSPDGRLLYTTENDYETGRGVIGVYDAARGYRRIGEFPSHGIGPH-ELLLMPDGETLVVANGGIETHPDSGRAKLNLD 134 (305)
T ss_pred EEEcCCCCEEEEeccccCCCcEEEEEEECcCCcEEEeEecCCCcChh-hEEEcCCCCEEEEEcCCCccCcccCceecChh
Confidence 467777875 5543 3478888885433 344444455688 99999999 78888532 1
Q ss_pred ----ceEEEe-CCC--eEEEEeccCCccccCccceEEcCCCcEEEeeCCCccCccccccccceecCCCEEEEEeCCCCeE
Q 022967 138 ----GLLKVT-EEG--VTVLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNET 210 (289)
Q Consensus 138 ----~i~~~~-~~g--~~~~~~~~~~~~~~~~~~l~~~~dG~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~ 210 (289)
.+..+| .+| ++.... .+.....+.+.|+++++|.++++.... +... + ..--|...+.. +..
T Consensus 135 tM~psL~~ld~~sG~ll~q~~L-p~~~~~lSiRHLa~~~~G~V~~a~Q~q--g~~~------~--~~PLva~~~~g-~~~ 202 (305)
T PF07433_consen 135 TMQPSLVYLDARSGALLEQVEL-PPDLHQLSIRHLAVDGDGTVAFAMQYQ--GDPG------D--APPLVALHRRG-GAL 202 (305)
T ss_pred hcCCceEEEecCCCceeeeeec-CccccccceeeEEecCCCcEEEEEecC--CCCC------c--cCCeEEEEcCC-Ccc
Confidence 245554 455 333211 112234578899999999999986431 1100 0 01123344332 223
Q ss_pred EEeeC------CCC-CcceEEEecCCCEEEEEeCCCCeEEEEEecCCC
Q 022967 211 SILLD------SLF-FANGVALSKDEDYLVVCETFKFRCLKYWLKGES 251 (289)
Q Consensus 211 ~~~~~------~~~-~p~gl~~~~d~~~l~v~~~~~~~i~~~~~~~~~ 251 (289)
+.+.. .+. ..-.|+++.+++.+.++.-..+++..||..+..
T Consensus 203 ~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg~ 250 (305)
T PF07433_consen 203 RLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGGRVAVWDAATGR 250 (305)
T ss_pred eeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCCCEEEEEECCCCC
Confidence 33211 122 234689999999888888778899999876543
No 64
>PRK02888 nitrous-oxide reductase; Validated
Probab=98.01 E-value=0.00062 Score=63.29 Aligned_cols=85 Identities=14% Similarity=0.140 Sum_probs=61.8
Q ss_pred CEEEEEeCCC-----CeEEEeeCCCCCcceEEEecCCCEEEEEeCCCCeEEEEEecCCC------Ccceeeeec--cCCC
Q 022967 198 GKLLKYDPSL-----NETSILLDSLFFANGVALSKDEDYLVVCETFKFRCLKYWLKGES------KEQTEIFVE--NLPG 264 (289)
Q Consensus 198 g~i~~~~~~~-----~~~~~~~~~~~~p~gl~~~~d~~~l~v~~~~~~~i~~~~~~~~~------~~~~~~~~~--~~~~ 264 (289)
+.|-.+|..+ .++..+..-...|.|+.++|||+++|++...+..+.++|++..+ +.-...... .+.-
T Consensus 296 n~V~VID~~t~~~~~~~v~~yIPVGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaevevGl 375 (635)
T PRK02888 296 SKVPVVDGRKAANAGSALTRYVPVPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPELGL 375 (635)
T ss_pred CEEEEEECCccccCCcceEEEEECCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeeccCC
Confidence 4688888876 34555556678899999999999999999999999999986421 111111111 2234
Q ss_pred CCCceeeCCCCCEEEEEe
Q 022967 265 GPDNIKLAPDGSFWIAIL 282 (289)
Q Consensus 265 ~p~~i~~d~~G~lwv~~~ 282 (289)
.|...++|.+|+.|++..
T Consensus 376 GPLHTaFDg~G~aytslf 393 (635)
T PRK02888 376 GPLHTAFDGRGNAYTTLF 393 (635)
T ss_pred CcceEEECCCCCEEEeEe
Confidence 688899999999998864
No 65
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=98.00 E-value=0.0042 Score=56.13 Aligned_cols=147 Identities=14% Similarity=0.086 Sum_probs=90.0
Q ss_pred EEEccCCCE-EEEe-c--CCeEEEEe-cCCceEEeeeecCcCccCeEEcCCCc-EEEEeCC---CceEEEe-CCC-eEEE
Q 022967 82 VCVDRNGVL-YTAT-R--DGWIKRLH-KNGTWENWKLIGGDTLLGITTTQENE-ILVCDAD---KGLLKVT-EEG-VTVL 150 (289)
Q Consensus 82 l~~d~~g~l-~v~~-~--~g~i~~~~-~~g~~~~~~~~~~~p~~gl~~d~~g~-l~v~~~~---~~i~~~~-~~g-~~~~ 150 (289)
.++.++|+. ++.. . ...|+.++ .+|+...+....+... .+++.+||+ |+++... ..|+.++ .++ .+.+
T Consensus 195 p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~~~~~~~~~-~~~~spDg~~l~~~~~~~~~~~i~~~d~~~~~~~~l 273 (417)
T TIGR02800 195 PAWSPDGQKLAYVSFESGKPEIYVQDLATGQREKVASFPGMNG-APAFSPDGSKLAVSLSKDGNPDIYVMDLDGKQLTRL 273 (417)
T ss_pred ccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEeecCCCCcc-ceEECCCCCEEEEEECCCCCccEEEEECCCCCEEEC
Confidence 356677763 3333 2 24688888 4565555444334455 788989985 6555322 3488888 555 5444
Q ss_pred EeccCCccccCccceEEcCCCc-EEEeeCCCccCccccccccceecCCCEEEEEeCCCCeEEEeeCCCCCcceEEEecCC
Q 022967 151 ASHVNGSRINLADDLIAATDGS-IYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANGVALSKDE 229 (289)
Q Consensus 151 ~~~~~~~~~~~~~~l~~~~dG~-lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~p~gl~~~~d~ 229 (289)
... . .......+.+||. |+++... .....||.++.++++...+..........+++||+
T Consensus 274 ~~~-~----~~~~~~~~s~dg~~l~~~s~~---------------~g~~~iy~~d~~~~~~~~l~~~~~~~~~~~~spdg 333 (417)
T TIGR02800 274 TNG-P----GIDTEPSWSPDGKSIAFTSDR---------------GGSPQIYMMDADGGEVRRLTFRGGYNASPSWSPDG 333 (417)
T ss_pred CCC-C----CCCCCEEECCCCCEEEEEECC---------------CCCceEEEEECCCCCEEEeecCCCCccCeEECCCC
Confidence 221 1 1122457788885 5554321 12247999998877766655444455677899999
Q ss_pred CEEEEEeCCC--CeEEEEEecC
Q 022967 230 DYLVVCETFK--FRCLKYWLKG 249 (289)
Q Consensus 230 ~~l~v~~~~~--~~i~~~~~~~ 249 (289)
+.++++.... .+|+.+++++
T Consensus 334 ~~i~~~~~~~~~~~i~~~d~~~ 355 (417)
T TIGR02800 334 DLIAFVHREGGGFNIAVMDLDG 355 (417)
T ss_pred CEEEEEEccCCceEEEEEeCCC
Confidence 9888876543 3788888765
No 66
>PRK04043 tolB translocation protein TolB; Provisional
Probab=97.99 E-value=0.0047 Score=56.04 Aligned_cols=145 Identities=11% Similarity=0.074 Sum_probs=90.3
Q ss_pred EEEccCCC--EEEEe-c--CCeEEEEe-cCCceEEeeeecCcCccCeEEcCCCc-EEEEeC-C--CceEEEe-CCC-eEE
Q 022967 82 VCVDRNGV--LYTAT-R--DGWIKRLH-KNGTWENWKLIGGDTLLGITTTQENE-ILVCDA-D--KGLLKVT-EEG-VTV 149 (289)
Q Consensus 82 l~~d~~g~--l~v~~-~--~g~i~~~~-~~g~~~~~~~~~~~p~~gl~~d~~g~-l~v~~~-~--~~i~~~~-~~g-~~~ 149 (289)
..+.|+|+ +|+.. . +..|+.++ .+|+.+.+....+... ...+.+||+ |.++.. . ..|+.++ ++| .+.
T Consensus 193 p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~~~g~~~-~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g~~~~ 271 (419)
T PRK04043 193 PKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIASSQGMLV-VSDVSKDGSKLLLTMAPKGQPDIYLYDTNTKTLTQ 271 (419)
T ss_pred EEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEecCCCcEE-eeEECCCCCEEEEEEccCCCcEEEEEECCCCcEEE
Confidence 46677775 55433 2 35688888 5666666554334333 566888885 554432 1 3589998 566 665
Q ss_pred EEeccCCccccCccceEEcCCC-cEEEeeCCCccCccccccccceecCCCEEEEEeCCCCeEEEeeC-CCCCcceEEEec
Q 022967 150 LASHVNGSRINLADDLIAATDG-SIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLD-SLFFANGVALSK 227 (289)
Q Consensus 150 ~~~~~~~~~~~~~~~l~~~~dG-~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~-~~~~p~gl~~~~ 227 (289)
+... .+ ......+.||| .|||+... .....||++|.++++.+.+.. +.. + ..|+|
T Consensus 272 LT~~-~~----~d~~p~~SPDG~~I~F~Sdr---------------~g~~~Iy~~dl~~g~~~rlt~~g~~--~-~~~SP 328 (419)
T PRK04043 272 ITNY-PG----IDVNGNFVEDDKRIVFVSDR---------------LGYPNIFMKKLNSGSVEQVVFHGKN--N-SSVST 328 (419)
T ss_pred cccC-CC----ccCccEECCCCCEEEEEECC---------------CCCceEEEEECCCCCeEeCccCCCc--C-ceECC
Confidence 5432 11 11234789999 58887532 123479999999888765543 222 2 48999
Q ss_pred CCCEEEEEeCCC--------CeEEEEEecCC
Q 022967 228 DEDYLVVCETFK--------FRCLKYWLKGE 250 (289)
Q Consensus 228 d~~~l~v~~~~~--------~~i~~~~~~~~ 250 (289)
||+.+.++.... ..|+.+++++.
T Consensus 329 DG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g 359 (419)
T PRK04043 329 YKNYIVYSSRETNNEFGKNTFNLYLISTNSD 359 (419)
T ss_pred CCCEEEEEEcCCCcccCCCCcEEEEEECCCC
Confidence 999887765432 47888888765
No 67
>PRK05137 tolB translocation protein TolB; Provisional
Probab=97.97 E-value=0.0029 Score=57.78 Aligned_cols=133 Identities=14% Similarity=0.104 Sum_probs=80.6
Q ss_pred eEEEEecCCce-EEeeeecCcCccCeEEcCCCc-EEEE-eCC--CceEEEe-CCC-eEEEEeccCCccccCccceEEcCC
Q 022967 98 WIKRLHKNGTW-ENWKLIGGDTLLGITTTQENE-ILVC-DAD--KGLLKVT-EEG-VTVLASHVNGSRINLADDLIAATD 170 (289)
Q Consensus 98 ~i~~~~~~g~~-~~~~~~~~~p~~gl~~d~~g~-l~v~-~~~--~~i~~~~-~~g-~~~~~~~~~~~~~~~~~~l~~~~d 170 (289)
.|+.++.+|.. ..+........ ..++.+||+ |+++ ... ..|+.++ ..| .+.+.. ..+ ......+.||
T Consensus 183 ~l~~~d~dg~~~~~lt~~~~~v~-~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~~l~~-~~g----~~~~~~~SPD 256 (435)
T PRK05137 183 RLAIMDQDGANVRYLTDGSSLVL-TPRFSPNRQEITYMSYANGRPRVYLLDLETGQRELVGN-FPG----MTFAPRFSPD 256 (435)
T ss_pred EEEEECCCCCCcEEEecCCCCeE-eeEECCCCCEEEEEEecCCCCEEEEEECCCCcEEEeec-CCC----cccCcEECCC
Confidence 56666655532 23332223344 778888986 4333 321 3588888 666 555432 121 2346689999
Q ss_pred Cc-EEEeeCCCccCccccccccceecCCCEEEEEeCCCCeEEEeeCCCCCcceEEEecCCCEEEEEeC--CCCeEEEEEe
Q 022967 171 GS-IYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANGVALSKDEDYLVVCET--FKFRCLKYWL 247 (289)
Q Consensus 171 G~-lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~p~gl~~~~d~~~l~v~~~--~~~~i~~~~~ 247 (289)
|+ |+++... .....||.+|.++++...+...........|+|||++++++.. +...|+++++
T Consensus 257 G~~la~~~~~---------------~g~~~Iy~~d~~~~~~~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~ 321 (435)
T PRK05137 257 GRKVVMSLSQ---------------GGNTDIYTMDLRSGTTTRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNA 321 (435)
T ss_pred CCEEEEEEec---------------CCCceEEEEECCCCceEEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEEC
Confidence 95 6555321 1235699999988877666544334456789999998877643 2357999988
Q ss_pred cCCC
Q 022967 248 KGES 251 (289)
Q Consensus 248 ~~~~ 251 (289)
++..
T Consensus 322 ~g~~ 325 (435)
T PRK05137 322 DGSN 325 (435)
T ss_pred CCCC
Confidence 7643
No 68
>PRK04792 tolB translocation protein TolB; Provisional
Probab=97.97 E-value=0.0028 Score=58.06 Aligned_cols=110 Identities=8% Similarity=0.044 Sum_probs=70.5
Q ss_pred CeEEcCCCc-EEEE-eCC--CceEEEe-CCC-eEEEEeccCCccccCccceEEcCCCc-EEEeeCCCccCccccccccce
Q 022967 121 GITTTQENE-ILVC-DAD--KGLLKVT-EEG-VTVLASHVNGSRINLADDLIAATDGS-IYFSVASTKFGLHNWGLDLLE 193 (289)
Q Consensus 121 gl~~d~~g~-l~v~-~~~--~~i~~~~-~~g-~~~~~~~~~~~~~~~~~~l~~~~dG~-lyv~~~~~~~~~~~~~~~~~~ 193 (289)
...+.+||+ |+++ ... ..|+.++ ..| .+.+.. ..+ ......++|||+ |+++...
T Consensus 222 ~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~lt~-~~g----~~~~~~wSPDG~~La~~~~~-------------- 282 (448)
T PRK04792 222 SPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREKVTS-FPG----INGAPRFSPDGKKLALVLSK-------------- 282 (448)
T ss_pred CceECCCCCEEEEEEecCCCcEEEEEECCCCCeEEecC-CCC----CcCCeeECCCCCEEEEEEeC--------------
Confidence 678889986 4443 322 2488888 556 544432 121 223578999996 6665321
Q ss_pred ecCCCEEEEEeCCCCeEEEeeCCCCCcceEEEecCCCEEEEEeC--CCCeEEEEEecCC
Q 022967 194 AKPHGKLLKYDPSLNETSILLDSLFFANGVALSKDEDYLVVCET--FKFRCLKYWLKGE 250 (289)
Q Consensus 194 ~~~~g~i~~~~~~~~~~~~~~~~~~~p~gl~~~~d~~~l~v~~~--~~~~i~~~~~~~~ 250 (289)
.+...||.+|.++++.+.+..........+|+||+++++++.. +...|+++++++.
T Consensus 283 -~g~~~Iy~~dl~tg~~~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g 340 (448)
T PRK04792 283 -DGQPEIYVVDIATKALTRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASG 340 (448)
T ss_pred -CCCeEEEEEECCCCCeEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCC
Confidence 1234699999988877766544444566789999998877643 3457888887654
No 69
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=97.94 E-value=0.00083 Score=56.05 Aligned_cols=184 Identities=10% Similarity=0.019 Sum_probs=101.5
Q ss_pred eEeccCCcCCcceEEEccCCCEEEEec-C--CeEEEEe-cCCceEEeeeecC--cCccCeEEcCCCcEEEEeCCC-ceEE
Q 022967 69 TRLGEGILNGPEDVCVDRNGVLYTATR-D--GWIKRLH-KNGTWENWKLIGG--DTLLGITTTQENEILVCDADK-GLLK 141 (289)
Q Consensus 69 ~~~~~~~~~~p~~l~~d~~g~l~v~~~-~--g~i~~~~-~~g~~~~~~~~~~--~p~~gl~~d~~g~l~v~~~~~-~i~~ 141 (289)
+..+-++-..-+++.++.+|.||-++. . .+|.+++ .+|+......-.. ..- ||+.. +++||.-.... ..+.
T Consensus 37 ~~ypHd~~aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgE-Git~~-~d~l~qLTWk~~~~f~ 114 (264)
T PF05096_consen 37 ETYPHDPTAFTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGE-GITIL-GDKLYQLTWKEGTGFV 114 (264)
T ss_dssp EEEE--TT-EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EE-EEEEE-TTEEEEEESSSSEEEE
T ss_pred EECCCCCcccCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccce-eEEEE-CCEEEEEEecCCeEEE
Confidence 334333334456788877899997762 3 3688888 5676554332221 223 77775 45899888654 4677
Q ss_pred EeCCC---eEEEEeccCCccccCccceEEcCCCcEEEeeCCCccCccccccccceecCCCEEEEEeCCCCeEE----Eee
Q 022967 142 VTEEG---VTVLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETS----ILL 214 (289)
Q Consensus 142 ~~~~g---~~~~~~~~~~~~~~~~~~l~~~~dG~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~----~~~ 214 (289)
+|.+- +..+.. ++ .-.||+.+ +..||++|++ ..|+.+||++-+.. +..
T Consensus 115 yd~~tl~~~~~~~y--~~----EGWGLt~d-g~~Li~SDGS------------------~~L~~~dP~~f~~~~~i~V~~ 169 (264)
T PF05096_consen 115 YDPNTLKKIGTFPY--PG----EGWGLTSD-GKRLIMSDGS------------------SRLYFLDPETFKEVRTIQVTD 169 (264)
T ss_dssp EETTTTEEEEEEE---SS----S--EEEEC-SSCEEEE-SS------------------SEEEEE-TTT-SEEEEEE-EE
T ss_pred EccccceEEEEEec--CC----cceEEEcC-CCEEEEECCc------------------cceEEECCcccceEEEEEEEE
Confidence 88543 333321 21 34578744 3379999976 68999999753322 222
Q ss_pred CC--CCCcceEEEecCCCEEEEEeCCCCeEEEEEecCCCCcce---eeeecc---------CCCCCCceeeCCCC-CEEE
Q 022967 215 DS--LFFANGVALSKDEDYLVVCETFKFRCLKYWLKGESKEQT---EIFVEN---------LPGGPDNIKLAPDG-SFWI 279 (289)
Q Consensus 215 ~~--~~~p~gl~~~~d~~~l~v~~~~~~~i~~~~~~~~~~~~~---~~~~~~---------~~~~p~~i~~d~~G-~lwv 279 (289)
.+ ...-|.+-+- +| .+|.---.+.+|.++|+.+...... ..+... ....-+|||.|+++ ++||
T Consensus 170 ~g~pv~~LNELE~i-~G-~IyANVW~td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~v 247 (264)
T PF05096_consen 170 NGRPVSNLNELEYI-NG-KIYANVWQTDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFV 247 (264)
T ss_dssp TTEE---EEEEEEE-TT-EEEEEETTSSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEE
T ss_pred CCEECCCcEeEEEE-cC-EEEEEeCCCCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEE
Confidence 22 3345666664 44 4888777889999999875433211 000000 01345789998664 7888
Q ss_pred EE
Q 022967 280 AI 281 (289)
Q Consensus 280 ~~ 281 (289)
..
T Consensus 248 TG 249 (264)
T PF05096_consen 248 TG 249 (264)
T ss_dssp EE
T ss_pred Ee
Confidence 74
No 70
>PRK03629 tolB translocation protein TolB; Provisional
Probab=97.93 E-value=0.0037 Score=56.96 Aligned_cols=132 Identities=14% Similarity=0.048 Sum_probs=78.2
Q ss_pred eEEEEecCCc-eEEeeeecCcCccCeEEcCCCc-EEE-EeC-C-CceEEEe-CCC-eEEEEeccCCccccCccceEEcCC
Q 022967 98 WIKRLHKNGT-WENWKLIGGDTLLGITTTQENE-ILV-CDA-D-KGLLKVT-EEG-VTVLASHVNGSRINLADDLIAATD 170 (289)
Q Consensus 98 ~i~~~~~~g~-~~~~~~~~~~p~~gl~~d~~g~-l~v-~~~-~-~~i~~~~-~~g-~~~~~~~~~~~~~~~~~~l~~~~d 170 (289)
+|+..+.+|. ...+........ ..++.+||+ |.+ +.. + ..++.++ ..| .+.+.. ..+ ......++||
T Consensus 180 ~l~~~d~dg~~~~~lt~~~~~~~-~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~~-~~~----~~~~~~~SPD 253 (429)
T PRK03629 180 ELRVSDYDGYNQFVVHRSPQPLM-SPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVAS-FPR----HNGAPAFSPD 253 (429)
T ss_pred eEEEEcCCCCCCEEeecCCCcee-eeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEccC-CCC----CcCCeEECCC
Confidence 3555554443 222322222334 788999996 333 322 1 3477777 556 554432 111 2336789999
Q ss_pred Cc-EEEeeCCCccCccccccccceecCCCEEEEEeCCCCeEEEeeCCCCCcceEEEecCCCEEEEEeC--CCCeEEEEEe
Q 022967 171 GS-IYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANGVALSKDEDYLVVCET--FKFRCLKYWL 247 (289)
Q Consensus 171 G~-lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~p~gl~~~~d~~~l~v~~~--~~~~i~~~~~ 247 (289)
|+ |+++... .+...||.+|.++++.+.+..+........|+|||+.|+++.. +...|+++++
T Consensus 254 G~~La~~~~~---------------~g~~~I~~~d~~tg~~~~lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~ 318 (429)
T PRK03629 254 GSKLAFALSK---------------TGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNI 318 (429)
T ss_pred CCEEEEEEcC---------------CCCcEEEEEECCCCCEEEccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEEC
Confidence 95 6665321 0223699999988877776554444567899999997765533 2347888887
Q ss_pred cCC
Q 022967 248 KGE 250 (289)
Q Consensus 248 ~~~ 250 (289)
++.
T Consensus 319 ~~g 321 (429)
T PRK03629 319 NGG 321 (429)
T ss_pred CCC
Confidence 754
No 71
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=97.93 E-value=0.001 Score=58.61 Aligned_cols=187 Identities=14% Similarity=0.098 Sum_probs=107.5
Q ss_pred cceEEEccCCCEE-EEecCCeEEEEecCCceEEee---eecCcCccCeEEcCCCc-EEEE-eCCCceEEEe-CCC-eEEE
Q 022967 79 PEDVCVDRNGVLY-TATRDGWIKRLHKNGTWENWK---LIGGDTLLGITTTQENE-ILVC-DADKGLLKVT-EEG-VTVL 150 (289)
Q Consensus 79 p~~l~~d~~g~l~-v~~~~g~i~~~~~~g~~~~~~---~~~~~p~~gl~~d~~g~-l~v~-~~~~~i~~~~-~~g-~~~~ 150 (289)
-.+|.+.|.-.|. ++..++.+..+..||+..... .-...|+--..|.++|. ..++ ....-+|.+| ..+ +..+
T Consensus 216 I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~~k~ 295 (514)
T KOG2055|consen 216 ITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKVTKL 295 (514)
T ss_pred ceEEEecCCCceEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCCCceEEEecccceEEEEeeccccccccc
Confidence 4557788766655 666677666665566543322 12344553566778887 3333 3323477788 555 5444
Q ss_pred EeccCCccccCccceEEcCCCcEEEeeCCCccCccccccccceecCCCEEEEEeCCCCeEEEeeCCCCCcceEEEecCCC
Q 022967 151 ASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANGVALSKDED 230 (289)
Q Consensus 151 ~~~~~~~~~~~~~~l~~~~dG~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~p~gl~~~~d~~ 230 (289)
.. ..+.+..+..-+.+.+++.+....+. .|.|+.+...++++..-..--....+++|+.|++
T Consensus 296 ~~-~~g~e~~~~e~FeVShd~~fia~~G~-----------------~G~I~lLhakT~eli~s~KieG~v~~~~fsSdsk 357 (514)
T KOG2055|consen 296 KP-PYGVEEKSMERFEVSHDSNFIAIAGN-----------------NGHIHLLHAKTKELITSFKIEGVVSDFTFSSDSK 357 (514)
T ss_pred cC-CCCcccchhheeEecCCCCeEEEccc-----------------CceEEeehhhhhhhhheeeeccEEeeEEEecCCc
Confidence 22 22333345667889999986555443 4778888777665432211122346788999999
Q ss_pred EEEEEeCCCCeEEEEEecCCCCcceeeeeccCCCCCCceeeCCCCCEEEEEeCccc
Q 022967 231 YLVVCETFKFRCLKYWLKGESKEQTEIFVENLPGGPDNIKLAPDGSFWIAILQVFI 286 (289)
Q Consensus 231 ~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~lwv~~~~g~i 286 (289)
.||++.. .+.|++||+..... ...|.+...-.-..++...+|.++......||
T Consensus 358 ~l~~~~~-~GeV~v~nl~~~~~--~~rf~D~G~v~gts~~~S~ng~ylA~GS~~Gi 410 (514)
T KOG2055|consen 358 ELLASGG-TGEVYVWNLRQNSC--LHRFVDDGSVHGTSLCISLNGSYLATGSDSGI 410 (514)
T ss_pred EEEEEcC-CceEEEEecCCcce--EEEEeecCccceeeeeecCCCceEEeccCcce
Confidence 8888854 46999999876522 23454432222233665666763333334444
No 72
>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins. For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.
Probab=97.92 E-value=2.1e-05 Score=42.05 Aligned_cols=28 Identities=21% Similarity=0.456 Sum_probs=24.6
Q ss_pred CCCcceEEEecCCCEEEEEeCCCCeEEEE
Q 022967 217 LFFANGVALSKDEDYLVVCETFKFRCLKY 245 (289)
Q Consensus 217 ~~~p~gl~~~~d~~~l~v~~~~~~~i~~~ 245 (289)
+..|.|++++++|+ +||+|+++++|.+|
T Consensus 1 f~~P~gvav~~~g~-i~VaD~~n~rV~vf 28 (28)
T PF01436_consen 1 FNYPHGVAVDSDGN-IYVADSGNHRVQVF 28 (28)
T ss_dssp BSSEEEEEEETTSE-EEEEECCCTEEEEE
T ss_pred CcCCcEEEEeCCCC-EEEEECCCCEEEEC
Confidence 35799999997776 99999999999986
No 73
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=97.91 E-value=0.014 Score=52.62 Aligned_cols=139 Identities=17% Similarity=0.164 Sum_probs=77.2
Q ss_pred EEccCCCEEEEecCCeEEEEe-cCCceEEeeeecC-----------cCccCeEEcCCCcEEEEeCCCceEEEe-CCC-eE
Q 022967 83 CVDRNGVLYTATRDGWIKRLH-KNGTWENWKLIGG-----------DTLLGITTTQENEILVCDADKGLLKVT-EEG-VT 148 (289)
Q Consensus 83 ~~d~~g~l~v~~~~g~i~~~~-~~g~~~~~~~~~~-----------~p~~gl~~d~~g~l~v~~~~~~i~~~~-~~g-~~ 148 (289)
+++ +|.+|+.+.+|.++.++ .+|+...-..... ....+++++ ++++|++.....++.+| ++| ..
T Consensus 66 vv~-~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v~-~~~v~v~~~~g~l~ald~~tG~~~ 143 (394)
T PRK11138 66 AVA-YNKVYAADRAGLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTVA-GGKVYIGSEKGQVYALNAEDGEVA 143 (394)
T ss_pred EEE-CCEEEEECCCCeEEEEECCCCcEeeEEcCCCcccccccccccccccccEEE-CCEEEEEcCCCEEEEEECCCCCCc
Confidence 443 68999999889999999 5786432211111 111134554 57899987656799999 678 43
Q ss_pred EEEeccCCccccCccceEEcCCCcEEEeeCCCccCccccccccceecCCCEEEEEeCCCCeEEEeeCCCCCc-------c
Q 022967 149 VLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFA-------N 221 (289)
Q Consensus 149 ~~~~~~~~~~~~~~~~l~~~~dG~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~p-------~ 221 (289)
.-.. ..+.....| .+ .++.+|+... .+.|+.+|+++|+..--... ..| .
T Consensus 144 W~~~-~~~~~~ssP---~v-~~~~v~v~~~------------------~g~l~ald~~tG~~~W~~~~-~~~~~~~~~~~ 199 (394)
T PRK11138 144 WQTK-VAGEALSRP---VV-SDGLVLVHTS------------------NGMLQALNESDGAVKWTVNL-DVPSLTLRGES 199 (394)
T ss_pred cccc-CCCceecCC---EE-ECCEEEEECC------------------CCEEEEEEccCCCEeeeecC-CCCcccccCCC
Confidence 3221 122111111 22 2678888753 36799999887765422111 011 1
Q ss_pred eEEEecCCCEEEEEeCCCCeEEEEEecCC
Q 022967 222 GVALSKDEDYLVVCETFKFRCLKYWLKGE 250 (289)
Q Consensus 222 gl~~~~d~~~l~v~~~~~~~i~~~~~~~~ 250 (289)
.-++ .++.+|+. +.++.++.++..+.
T Consensus 200 sP~v--~~~~v~~~-~~~g~v~a~d~~~G 225 (394)
T PRK11138 200 APAT--AFGGAIVG-GDNGRVSAVLMEQG 225 (394)
T ss_pred CCEE--ECCEEEEE-cCCCEEEEEEccCC
Confidence 1112 23346666 34577888876543
No 74
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=97.91 E-value=0.0046 Score=55.31 Aligned_cols=146 Identities=14% Similarity=0.123 Sum_probs=93.5
Q ss_pred cCCcceEEEccCCCEEEEecCCeEEEEecCCceEEeeeecC-cCccCeEEcCCCcEEEEeCCCceEEEe-CCC--eEEEE
Q 022967 76 LNGPEDVCVDRNGVLYTATRDGWIKRLHKNGTWENWKLIGG-DTLLGITTTQENEILVCDADKGLLKVT-EEG--VTVLA 151 (289)
Q Consensus 76 ~~~p~~l~~d~~g~l~v~~~~g~i~~~~~~g~~~~~~~~~~-~p~~gl~~d~~g~l~v~~~~~~i~~~~-~~g--~~~~~ 151 (289)
+..++.++... +.||+++..+.|++=+-...+.......+ .-. |++.+++.++|++....+.+++- +.. ...+.
T Consensus 329 ~G~iRtv~e~~-~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delw-gla~hps~~q~~T~gqdk~v~lW~~~k~~wt~~~ 406 (626)
T KOG2106|consen 329 FGPIRTVAEGK-GDILVGTTRNFILQGTLENGFTLTVQGHGDELW-GLATHPSKNQLLTCGQDKHVRLWNDHKLEWTKII 406 (626)
T ss_pred cCCeeEEecCC-CcEEEeeccceEEEeeecCCceEEEEeccccee-eEEcCCChhheeeccCcceEEEccCCceeEEEEe
Confidence 45567677664 45999998888887763333333333333 445 99999988888876544444443 222 33322
Q ss_pred eccCCccccCccceEEcCCCcEEEeeCCCccCccccccccceecCCCEEEEEeCCCCeEEEeeCCCCCcceEEEecCCCE
Q 022967 152 SHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANGVALSKDEDY 231 (289)
Q Consensus 152 ~~~~~~~~~~~~~l~~~~dG~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~p~gl~~~~d~~~ 231 (289)
.. ....+.++|.|.+-++.. .|+.+.+|.++.....+......-+-+.++|||..
T Consensus 407 ~d-------~~~~~~fhpsg~va~Gt~------------------~G~w~V~d~e~~~lv~~~~d~~~ls~v~ysp~G~~ 461 (626)
T KOG2106|consen 407 ED-------PAECADFHPSGVVAVGTA------------------TGRWFVLDTETQDLVTIHTDNEQLSVVRYSPDGAF 461 (626)
T ss_pred cC-------ceeEeeccCcceEEEeec------------------cceEEEEecccceeEEEEecCCceEEEEEcCCCCE
Confidence 21 244678889886666543 47888999886555444444344467899999997
Q ss_pred EEEEeCCCCeEEEEEecC
Q 022967 232 LVVCETFKFRCLKYWLKG 249 (289)
Q Consensus 232 l~v~~~~~~~i~~~~~~~ 249 (289)
|-+. +.++-|+.|.++.
T Consensus 462 lAvg-s~d~~iyiy~Vs~ 478 (626)
T KOG2106|consen 462 LAVG-SHDNHIYIYRVSA 478 (626)
T ss_pred EEEe-cCCCeEEEEEECC
Confidence 6666 6668888888764
No 75
>PRK01742 tolB translocation protein TolB; Provisional
Probab=97.88 E-value=0.0047 Score=56.31 Aligned_cols=145 Identities=14% Similarity=0.122 Sum_probs=87.8
Q ss_pred ceEEEccCCC-EE-EEec--CCeEEEEe-cCCceEEeeeecCcCccCeEEcCCCc-EEEEe-CCC--ceEEEe-CCC-eE
Q 022967 80 EDVCVDRNGV-LY-TATR--DGWIKRLH-KNGTWENWKLIGGDTLLGITTTQENE-ILVCD-ADK--GLLKVT-EEG-VT 148 (289)
Q Consensus 80 ~~l~~d~~g~-l~-v~~~--~g~i~~~~-~~g~~~~~~~~~~~p~~gl~~d~~g~-l~v~~-~~~--~i~~~~-~~g-~~ 148 (289)
.++.+.|+|+ |. ++.. +..|+.++ .+|+.+.+....+... .+++.+||+ |+++. ... .|+.++ ..+ .+
T Consensus 207 ~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~~~-~~~wSPDG~~La~~~~~~g~~~Iy~~d~~~~~~~ 285 (429)
T PRK01742 207 MSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRGHNG-APAFSPDGSRLAFASSKDGVLNIYVMGANGGTPS 285 (429)
T ss_pred ccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCCccC-ceeECCCCCEEEEEEecCCcEEEEEEECCCCCeE
Confidence 4468888886 33 3332 24688888 4555544443334445 788999996 55443 222 378888 555 55
Q ss_pred EEEeccCCccccCccceEEcCCCc-EEEeeCCCccCccccccccceecCCCEEEEEeCCCCeEEEeeCCCCCcceEEEec
Q 022967 149 VLASHVNGSRINLADDLIAATDGS-IYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANGVALSK 227 (289)
Q Consensus 149 ~~~~~~~~~~~~~~~~l~~~~dG~-lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~p~gl~~~~ 227 (289)
.+... . .......+.|||. |+++... .+.-.||.++.+++..+.+ .... ....++|
T Consensus 286 ~lt~~-~----~~~~~~~wSpDG~~i~f~s~~---------------~g~~~I~~~~~~~~~~~~l-~~~~--~~~~~Sp 342 (429)
T PRK01742 286 QLTSG-A----GNNTEPSWSPDGQSILFTSDR---------------SGSPQVYRMSASGGGASLV-GGRG--YSAQISA 342 (429)
T ss_pred eeccC-C----CCcCCEEECCCCCEEEEEECC---------------CCCceEEEEECCCCCeEEe-cCCC--CCccCCC
Confidence 54321 1 1245678999996 6665321 1234789998876655544 2211 3367999
Q ss_pred CCCEEEEEeCCCCeEEEEEecCC
Q 022967 228 DEDYLVVCETFKFRCLKYWLKGE 250 (289)
Q Consensus 228 d~~~l~v~~~~~~~i~~~~~~~~ 250 (289)
||+.++++.. ..+.++|+.+.
T Consensus 343 DG~~ia~~~~--~~i~~~Dl~~g 363 (429)
T PRK01742 343 DGKTLVMING--DNVVKQDLTSG 363 (429)
T ss_pred CCCEEEEEcC--CCEEEEECCCC
Confidence 9998877743 66888887654
No 76
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=97.86 E-value=0.0078 Score=52.75 Aligned_cols=169 Identities=17% Similarity=0.194 Sum_probs=94.1
Q ss_pred cCCcceEEEcc-CCCEEEEecCCe------EEEEe--c-CC---ceE-----EeeeecCc--------CccCeEEcCCCc
Q 022967 76 LNGPEDVCVDR-NGVLYTATRDGW------IKRLH--K-NG---TWE-----NWKLIGGD--------TLLGITTTQENE 129 (289)
Q Consensus 76 ~~~p~~l~~d~-~g~l~v~~~~g~------i~~~~--~-~g---~~~-----~~~~~~~~--------p~~gl~~d~~g~ 129 (289)
+.+=.+|..++ +|.+|+-+.+|. ++.+. . .+ .+. .+....+. +- ||++.++|.
T Consensus 19 ~GGlSgl~~~~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~E-gi~~~~~g~ 97 (326)
T PF13449_consen 19 FGGLSGLDYDPDDGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPE-GIAVPPDGS 97 (326)
T ss_pred cCcEeeEEEeCCCCEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChh-HeEEecCCC
Confidence 44557788884 677775454555 66555 2 11 111 11111122 33 788888999
Q ss_pred EEEEeCCC-------ceEEEeCCC--eEEE-Eec-c-------CC-ccccCccceEEcCCCc-EEEeeCCCccCcccccc
Q 022967 130 ILVCDADK-------GLLKVTEEG--VTVL-ASH-V-------NG-SRINLADDLIAATDGS-IYFSVASTKFGLHNWGL 189 (289)
Q Consensus 130 l~v~~~~~-------~i~~~~~~g--~~~~-~~~-~-------~~-~~~~~~~~l~~~~dG~-lyv~~~~~~~~~~~~~~ 189 (289)
+||++.+. .|++++.+| .+.+ .+. . .+ .......+|++.+||+ ||+...+....... .
T Consensus 98 ~~is~E~~~~~~~~p~I~~~~~~G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E~~l~~d~~--~ 175 (326)
T PF13449_consen 98 FWISSEGGRTGGIPPRIRRFDLDGRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAMESPLKQDGP--R 175 (326)
T ss_pred EEEEeCCccCCCCCCEEEEECCCCcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEECccccCCCc--c
Confidence 99997543 589999667 3443 111 1 11 1223556899999997 88876552111100 0
Q ss_pred ccceecCCCEEEEEeCCCCe--EEEe---eC------CCCCcceEEEecCCCEEEEEeCC-------CCeEEEEEec
Q 022967 190 DLLEAKPHGKLLKYDPSLNE--TSIL---LD------SLFFANGVALSKDEDYLVVCETF-------KFRCLKYWLK 248 (289)
Q Consensus 190 ~~~~~~~~g~i~~~~~~~~~--~~~~---~~------~~~~p~gl~~~~d~~~l~v~~~~-------~~~i~~~~~~ 248 (289)
.........+|++||+.+.. ...+ .+ ....+..++.-++++ |+|-++. ..+|+++++.
T Consensus 176 ~~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~-lLvLER~~~~~~~~~~ri~~v~l~ 251 (326)
T PF13449_consen 176 ANPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGR-LLVLERDFSPGTGNYKRIYRVDLS 251 (326)
T ss_pred cccccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCc-EEEEEccCCCCccceEEEEEEEcc
Confidence 00011112578999987522 2222 12 234556677777887 8888775 3467777765
No 77
>PRK02889 tolB translocation protein TolB; Provisional
Probab=97.85 E-value=0.0081 Score=54.72 Aligned_cols=132 Identities=9% Similarity=0.030 Sum_probs=76.3
Q ss_pred eEEEEecCCce-EEeeeecCcCccCeEEcCCCc-EEEEeCC---CceEEEe-CCC-eEEEEeccCCccccCccceEEcCC
Q 022967 98 WIKRLHKNGTW-ENWKLIGGDTLLGITTTQENE-ILVCDAD---KGLLKVT-EEG-VTVLASHVNGSRINLADDLIAATD 170 (289)
Q Consensus 98 ~i~~~~~~g~~-~~~~~~~~~p~~gl~~d~~g~-l~v~~~~---~~i~~~~-~~g-~~~~~~~~~~~~~~~~~~l~~~~d 170 (289)
+|+.+|.+|.. ..+........ ..++.+||+ |+++... ..|+.++ .+| ...+.. ..+ ......+.||
T Consensus 177 ~L~~~D~dG~~~~~l~~~~~~v~-~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~l~~-~~g----~~~~~~~SPD 250 (427)
T PRK02889 177 QLQISDADGQNAQSALSSPEPII-SPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRVVAN-FKG----SNSAPAWSPD 250 (427)
T ss_pred EEEEECCCCCCceEeccCCCCcc-cceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEEeec-CCC----CccceEECCC
Confidence 45555544432 22222222234 788889986 4444322 2488888 666 555432 121 2346789999
Q ss_pred Cc-EEEeeCCCccCccccccccceecCCCEEEEEeCCCCeEEEeeCCCCCcceEEEecCCCEEEEEeC--CCCeEEEEEe
Q 022967 171 GS-IYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANGVALSKDEDYLVVCET--FKFRCLKYWL 247 (289)
Q Consensus 171 G~-lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~p~gl~~~~d~~~l~v~~~--~~~~i~~~~~ 247 (289)
|+ |+++... .+...||.+|.+++..+.+...........|+|||++++++.. +...|++++.
T Consensus 251 G~~la~~~~~---------------~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~ 315 (427)
T PRK02889 251 GRTLAVALSR---------------DGNSQIYTVNADGSGLRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPA 315 (427)
T ss_pred CCEEEEEEcc---------------CCCceEEEEECCCCCcEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEEC
Confidence 95 6665321 1234799999887766655443333345689999998876543 3346777776
Q ss_pred cCC
Q 022967 248 KGE 250 (289)
Q Consensus 248 ~~~ 250 (289)
++.
T Consensus 316 ~~g 318 (427)
T PRK02889 316 SGG 318 (427)
T ss_pred CCC
Confidence 553
No 78
>PRK04922 tolB translocation protein TolB; Provisional
Probab=97.84 E-value=0.0033 Score=57.34 Aligned_cols=148 Identities=14% Similarity=0.096 Sum_probs=90.1
Q ss_pred eEEEccCCC-EEEE-ecC--CeEEEEe-cCCceEEeeeecCcCccCeEEcCCCc-EEEEe-CC--CceEEEe-CCC-eEE
Q 022967 81 DVCVDRNGV-LYTA-TRD--GWIKRLH-KNGTWENWKLIGGDTLLGITTTQENE-ILVCD-AD--KGLLKVT-EEG-VTV 149 (289)
Q Consensus 81 ~l~~d~~g~-l~v~-~~~--g~i~~~~-~~g~~~~~~~~~~~p~~gl~~d~~g~-l~v~~-~~--~~i~~~~-~~g-~~~ 149 (289)
.+.+.++|+ |++. +.+ ..|+.++ .+|+...+........ ...+.+||+ |+++. .. ..++.++ .++ .+.
T Consensus 252 ~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~~~~lt~~~~~~~-~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~ 330 (433)
T PRK04922 252 APSFSPDGRRLALTLSRDGNPEIYVMDLGSRQLTRLTNHFGIDT-EPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAER 330 (433)
T ss_pred CceECCCCCEEEEEEeCCCCceEEEEECCCCCeEECccCCCCcc-ceEECCCCCEEEEEECCCCCceEEEEECCCCCeEE
Confidence 467888886 5443 333 3688888 4555555443333334 788989986 44443 22 2488888 556 555
Q ss_pred EEeccCCccccCccceEEcCCCc-EEEeeCCCccCccccccccceecCCCEEEEEeCCCCeEEEeeCCCCCcceEEEecC
Q 022967 150 LASHVNGSRINLADDLIAATDGS-IYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANGVALSKD 228 (289)
Q Consensus 150 ~~~~~~~~~~~~~~~l~~~~dG~-lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~p~gl~~~~d 228 (289)
+.. .+ .......+.|||+ |+++... .....|+.+|.++++...+..+. ......|+||
T Consensus 331 lt~--~g---~~~~~~~~SpDG~~Ia~~~~~---------------~~~~~I~v~d~~~g~~~~Lt~~~-~~~~p~~spd 389 (433)
T PRK04922 331 LTF--QG---NYNARASVSPDGKKIAMVHGS---------------GGQYRIAVMDLSTGSVRTLTPGS-LDESPSFAPN 389 (433)
T ss_pred eec--CC---CCccCEEECCCCCEEEEEECC---------------CCceeEEEEECCCCCeEECCCCC-CCCCceECCC
Confidence 432 11 1233678999995 6665422 01236888998877766554332 2345689999
Q ss_pred CCEEEEEeC--CCCeEEEEEecCC
Q 022967 229 EDYLVVCET--FKFRCLKYWLKGE 250 (289)
Q Consensus 229 ~~~l~v~~~--~~~~i~~~~~~~~ 250 (289)
|+.++++.. +...|+.++.++.
T Consensus 390 G~~i~~~s~~~g~~~L~~~~~~g~ 413 (433)
T PRK04922 390 GSMVLYATREGGRGVLAAVSTDGR 413 (433)
T ss_pred CCEEEEEEecCCceEEEEEECCCC
Confidence 998777654 3456888887653
No 79
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=97.80 E-value=0.0036 Score=57.51 Aligned_cols=150 Identities=18% Similarity=0.238 Sum_probs=99.0
Q ss_pred cCCcceEEEccCCCEE-EEecCCeEEEEec-CC-ce-EEeeeecCcCccCeEEcCCCcEEEEeCCCc-eEEEe-CCC--e
Q 022967 76 LNGPEDVCVDRNGVLY-TATRDGWIKRLHK-NG-TW-ENWKLIGGDTLLGITTTQENEILVCDADKG-LLKVT-EEG--V 147 (289)
Q Consensus 76 ~~~p~~l~~d~~g~l~-v~~~~g~i~~~~~-~g-~~-~~~~~~~~~p~~gl~~d~~g~l~v~~~~~~-i~~~~-~~g--~ 147 (289)
...-.++++.++|... .+..+..|..++. +. .. ..+........ .++|.++|+++++....+ +..++ ..| .
T Consensus 203 ~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~~~~~~~l~gH~~~v~-~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~ 281 (456)
T KOG0266|consen 203 TRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDDGRNLKTLKGHSTYVT-SVAFSPDGNLLVSGSDDGTVRIWDVRTGECV 281 (456)
T ss_pred ccceeeeEECCCCcEEEEecCCceEEEeeccCCCeEEEEecCCCCceE-EEEecCCCCEEEEecCCCcEEEEeccCCeEE
Confidence 3455668888998755 4457788888883 33 33 33333334455 999999998888765544 55556 556 4
Q ss_pred EEEEeccCCccccCccceEEcCCCcEEEeeCCCccCccccccccceecCCCEEEEEeCCCCeEE--EeeCCCCCc---ce
Q 022967 148 TVLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETS--ILLDSLFFA---NG 222 (289)
Q Consensus 148 ~~~~~~~~~~~~~~~~~l~~~~dG~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~--~~~~~~~~p---~g 222 (289)
+.+.... ....++++.+||++.++... .+.|..+|..++... ....+...+ .-
T Consensus 282 ~~l~~hs-----~~is~~~f~~d~~~l~s~s~-----------------d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~ 339 (456)
T KOG0266|consen 282 RKLKGHS-----DGISGLAFSPDGNLLVSASY-----------------DGTIRVWDLETGSKLCLKLLSGAENSAPVTS 339 (456)
T ss_pred EeeeccC-----CceEEEEECCCCCEEEEcCC-----------------CccEEEEECCCCceeeeecccCCCCCCceeE
Confidence 4443321 24678899999987776532 477888999887732 233333444 67
Q ss_pred EEEecCCCEEEEEeCCCCeEEEEEecC
Q 022967 223 VALSKDEDYLVVCETFKFRCLKYWLKG 249 (289)
Q Consensus 223 l~~~~d~~~l~v~~~~~~~i~~~~~~~ 249 (289)
+.|+|++++++++. .++.+..|++..
T Consensus 340 ~~fsp~~~~ll~~~-~d~~~~~w~l~~ 365 (456)
T KOG0266|consen 340 VQFSPNGKYLLSAS-LDRTLKLWDLRS 365 (456)
T ss_pred EEECCCCcEEEEec-CCCeEEEEEccC
Confidence 78999999888774 446787777763
No 80
>PF05787 DUF839: Bacterial protein of unknown function (DUF839); InterPro: IPR008557 This family consists of bacterial proteins of unknown function.
Probab=97.77 E-value=0.0041 Score=57.82 Aligned_cols=201 Identities=17% Similarity=0.264 Sum_probs=105.1
Q ss_pred CCcceEEE---ccC-CCEEEEe--cCCeEEEEecCCceEEeeeecCcCccCeEEcCCCcEEEEeCCC--ceEEEe-CC--
Q 022967 77 NGPEDVCV---DRN-GVLYTAT--RDGWIKRLHKNGTWENWKLIGGDTLLGITTTQENEILVCDADK--GLLKVT-EE-- 145 (289)
Q Consensus 77 ~~p~~l~~---d~~-g~l~v~~--~~g~i~~~~~~g~~~~~~~~~~~p~~gl~~d~~g~l~v~~~~~--~i~~~~-~~-- 145 (289)
..-|.+++ +++ ..+|.++ .++.|+|+-.+........ .. .-..-..|.||++-... .+-.+. ..
T Consensus 244 f~HE~a~v~~~~~~~~vvY~gDD~~~~~lYkFVs~~~~~~~~~----~~-~~~ll~~GtLyaak~~~~g~~~Wv~L~~~~ 318 (524)
T PF05787_consen 244 FAHEAAAVVLADPGRVVVYMGDDGRNGYLYKFVSDKPWDPGDR----AA-NRDLLDEGTLYAAKFNQDGTGEWVPLGHGQ 318 (524)
T ss_pred ccccceeEEeecCCeEEEEEEecCCCCeEEEEecCCCCCCccc----ch-hhhhhhCCEeceEEECCCCcEEEEECCCcc
Confidence 45677777 653 4567666 4577888864443221100 01 11112467777774321 122222 11
Q ss_pred C-e----------EEE------EeccCCccccCccceEEcC-CCcEEEeeCCCccCc-c-ccccccceecCCCEEEEEeC
Q 022967 146 G-V----------TVL------ASHVNGSRINLADDLIAAT-DGSIYFSVASTKFGL-H-NWGLDLLEAKPHGKLLKYDP 205 (289)
Q Consensus 146 g-~----------~~~------~~~~~~~~~~~~~~l~~~~-dG~lyv~~~~~~~~~-~-~~~~~~~~~~~~g~i~~~~~ 205 (289)
+ + .++ +......++..+.++.++| +|.+||+.....-.. . .........+..|.|+++++
T Consensus 319 ~~l~~~~~~~~~a~v~~~tr~aA~~~GAT~f~RpEgi~~~p~~g~vY~a~T~~~~r~~~~~~~~n~~~~n~~G~I~r~~~ 398 (524)
T PF05787_consen 319 GGLTAKNGFADQADVLIETRRAADAVGATPFDRPEGITVNPDDGEVYFALTNNSGRGESDVDAANPRAGNGYGQIYRYDP 398 (524)
T ss_pred cccccCCCCCChHHhhhhhhhccccCccccccCccCeeEeCCCCEEEEEEecCCCCcccccccCCcccCCcccEEEEecc
Confidence 0 1 000 1112234677889999999 589999865421000 0 00111223456789999998
Q ss_pred CCC-------eEEEee------------------CCCCCcceEEEecCCCEEEEEeCCCCeE------------EEEE--
Q 022967 206 SLN-------ETSILL------------------DSLFFANGVALSKDEDYLVVCETFKFRC------------LKYW-- 246 (289)
Q Consensus 206 ~~~-------~~~~~~------------------~~~~~p~gl~~~~d~~~l~v~~~~~~~i------------~~~~-- 246 (289)
+++ +++.+. ..+..|..|+|+++|+ |||++.....- +.+.
T Consensus 399 ~~~d~~~~~f~~~~~~~~g~~~~~~~~~~~~~~~~~f~sPDNL~~d~~G~-LwI~eD~~~~~~~l~g~t~~G~~~~~~~~ 477 (524)
T PF05787_consen 399 DGNDHAATTFTWELFLVGGDPTDASGNGSNKCDDNGFASPDNLAFDPDGN-LWIQEDGGGSNNNLPGVTPDGEVYDFARN 477 (524)
T ss_pred cCCccccceeEEEEEEEecCcccccccccCcccCCCcCCCCceEECCCCC-EEEEeCCCCCCcccccccccCceeeeeec
Confidence 765 333332 1266889999999998 77776543321 1111
Q ss_pred ------ecCCCCcceeeeec-cCCCCCCceeeCCCC-CEEEEEeC
Q 022967 247 ------LKGESKEQTEIFVE-NLPGGPDNIKLAPDG-SFWIAILQ 283 (289)
Q Consensus 247 ------~~~~~~~~~~~~~~-~~~~~p~~i~~d~~G-~lwv~~~~ 283 (289)
..+...+....|.. .......|+++..|| .|||....
T Consensus 478 ~G~~~~~~~~~~g~~~rf~~~P~gaE~tG~~fspDg~tlFvniQH 522 (524)
T PF05787_consen 478 DGNNVWAYDPDTGELKRFLVGPNGAEITGPCFSPDGRTLFVNIQH 522 (524)
T ss_pred ccceeeeccccccceeeeccCCCCcccccceECCCCCEEEEEEeC
Confidence 11122233334432 222456678898888 57776544
No 81
>PRK00178 tolB translocation protein TolB; Provisional
Probab=97.75 E-value=0.0081 Score=54.69 Aligned_cols=110 Identities=15% Similarity=0.131 Sum_probs=69.3
Q ss_pred CeEEcCCCc-EEE-EeCC--CceEEEe-CCC-eEEEEeccCCccccCccceEEcCCCc-EEEeeCCCccCccccccccce
Q 022967 121 GITTTQENE-ILV-CDAD--KGLLKVT-EEG-VTVLASHVNGSRINLADDLIAATDGS-IYFSVASTKFGLHNWGLDLLE 193 (289)
Q Consensus 121 gl~~d~~g~-l~v-~~~~--~~i~~~~-~~g-~~~~~~~~~~~~~~~~~~l~~~~dG~-lyv~~~~~~~~~~~~~~~~~~ 193 (289)
...+.+||+ |++ +... ..|+.++ .+| .+.+.. ..+ ......+.|||+ |+++...
T Consensus 203 ~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~l~~-~~g----~~~~~~~SpDG~~la~~~~~-------------- 263 (430)
T PRK00178 203 SPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQITN-FEG----LNGAPAWSPDGSKLAFVLSK-------------- 263 (430)
T ss_pred eeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEEccC-CCC----CcCCeEECCCCCEEEEEEcc--------------
Confidence 678888886 433 3322 3488888 566 554432 111 223578999995 6655322
Q ss_pred ecCCCEEEEEeCCCCeEEEeeCCCCCcceEEEecCCCEEEEEeC--CCCeEEEEEecCC
Q 022967 194 AKPHGKLLKYDPSLNETSILLDSLFFANGVALSKDEDYLVVCET--FKFRCLKYWLKGE 250 (289)
Q Consensus 194 ~~~~g~i~~~~~~~~~~~~~~~~~~~p~gl~~~~d~~~l~v~~~--~~~~i~~~~~~~~ 250 (289)
.+...||.+|.++++.+.+...........|+||++.++++.. +...|+++++++.
T Consensus 264 -~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g 321 (430)
T PRK00178 264 -DGNPEIYVMDLASRQLSRVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGG 321 (430)
T ss_pred -CCCceEEEEECCCCCeEEcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCC
Confidence 1224799999988877666443333455689999998877643 2357888887654
No 82
>COG2133 Glucose/sorbosone dehydrogenases [Carbohydrate transport and metabolism]
Probab=97.72 E-value=0.0032 Score=55.89 Aligned_cols=60 Identities=17% Similarity=0.285 Sum_probs=41.8
Q ss_pred CCcceEEEccCCCEEEEe--c------------CCeEEEEecCC---------ceEEeeeecCcCccCeEEcCC-CcEEE
Q 022967 77 NGPEDVCVDRNGVLYTAT--R------------DGWIKRLHKNG---------TWENWKLIGGDTLLGITTTQE-NEILV 132 (289)
Q Consensus 77 ~~p~~l~~d~~g~l~v~~--~------------~g~i~~~~~~g---------~~~~~~~~~~~p~~gl~~d~~-g~l~v 132 (289)
+.=..|+++|||.||++. . .|+|++++.++ ..+.+.-+.-+|. |+++++. |.||+
T Consensus 177 H~g~~l~f~pDG~Lyvs~G~~~~~~~aq~~~~~~Gk~~r~~~a~~~~~d~p~~~~~i~s~G~RN~q-Gl~w~P~tg~Lw~ 255 (399)
T COG2133 177 HFGGRLVFGPDGKLYVTTGSNGDPALAQDNVSLAGKVLRIDRAGIIPADNPFPNSEIWSYGHRNPQ-GLAWHPVTGALWT 255 (399)
T ss_pred cCcccEEECCCCcEEEEeCCCCCcccccCccccccceeeeccCcccccCCCCCCcceEEeccCCcc-ceeecCCCCcEEE
Confidence 334559999999999754 2 14566666333 2334555556789 9999986 89999
Q ss_pred EeCCC
Q 022967 133 CDADK 137 (289)
Q Consensus 133 ~~~~~ 137 (289)
++++.
T Consensus 256 ~e~g~ 260 (399)
T COG2133 256 TEHGP 260 (399)
T ss_pred EecCC
Confidence 98764
No 83
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=97.69 E-value=0.014 Score=52.64 Aligned_cols=183 Identities=18% Similarity=0.217 Sum_probs=97.5
Q ss_pred cceEEEccCCCEEEE-ecCCeEEEEe-cCCce-EEeee---ecCcCccCeEEcCCCcEEEE-eCCCceEEEe-CC-C-eE
Q 022967 79 PEDVCVDRNGVLYTA-TRDGWIKRLH-KNGTW-ENWKL---IGGDTLLGITTTQENEILVC-DADKGLLKVT-EE-G-VT 148 (289)
Q Consensus 79 p~~l~~d~~g~l~v~-~~~g~i~~~~-~~g~~-~~~~~---~~~~p~~gl~~d~~g~l~v~-~~~~~i~~~~-~~-g-~~ 148 (289)
-.++-+.|||..+++ ..+|+|+.|| .+|+. .++.. ..+... +|++.+|+.=+++ ..+..+-.+| .. . ++
T Consensus 193 V~~VRysPDG~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIf-alsWsPDs~~~~T~SaDkt~KIWdVs~~slv~ 271 (603)
T KOG0318|consen 193 VNCVRYSPDGSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIF-ALSWSPDSTQFLTVSADKTIKIWDVSTNSLVS 271 (603)
T ss_pred eeeEEECCCCCeEEEecCCccEEEEcCCCccEEEEecCCCCccccEE-EEEECCCCceEEEecCCceEEEEEeeccceEE
Confidence 466888999999954 4889999998 66653 33331 123345 6778777753333 3323232233 22 2 22
Q ss_pred EEEec--cCC-----------------------------c-------cccCccceEEcCCCcEEEeeCCCccCccccccc
Q 022967 149 VLASH--VNG-----------------------------S-------RINLADDLIAATDGSIYFSVASTKFGLHNWGLD 190 (289)
Q Consensus 149 ~~~~~--~~~-----------------------------~-------~~~~~~~l~~~~dG~lyv~~~~~~~~~~~~~~~ 190 (289)
.+... ... . -.+....+++.+||...++.
T Consensus 272 t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~Sg------------- 338 (603)
T KOG0318|consen 272 TWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSG------------- 338 (603)
T ss_pred EeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCCCEEEee-------------
Confidence 22100 000 0 01123345555555322221
Q ss_pred cceecCCCEEEEEeCCCCeEEEeeC--CCCCcceEEEecCCCEEEEEeCCCCeEEEEEecCCCCcceeeeeccCCCCCCc
Q 022967 191 LLEAKPHGKLLKYDPSLNETSILLD--SLFFANGVALSKDEDYLVVCETFKFRCLKYWLKGESKEQTEIFVENLPGGPDN 268 (289)
Q Consensus 191 ~~~~~~~g~i~~~~~~~~~~~~~~~--~~~~p~gl~~~~d~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~ 268 (289)
...|.|..++..++.-..+.. .-....+++.+..+. ++.+ .....|.++++.+......+.+ .+...|-+
T Consensus 339 ----syDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~-~~t~-g~Dd~l~~~~~~~~~~t~~~~~--~lg~QP~~ 410 (603)
T KOG0318|consen 339 ----SYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASESGE-LFTI-GWDDTLRVISLKDNGYTKSEVV--KLGSQPKG 410 (603)
T ss_pred ----ccCceEEEEecCCccccccccccccceEEEEeecCCCc-EEEE-ecCCeEEEEecccCccccccee--ecCCCcee
Confidence 124667667665444333321 122345666665454 4444 4568899998876554444432 45578999
Q ss_pred eeeCCCCCE-EEEEeC
Q 022967 269 IKLAPDGSF-WIAILQ 283 (289)
Q Consensus 269 i~~d~~G~l-wv~~~~ 283 (289)
+++.++|.+ .+++.+
T Consensus 411 lav~~d~~~avv~~~~ 426 (603)
T KOG0318|consen 411 LAVLSDGGTAVVACIS 426 (603)
T ss_pred EEEcCCCCEEEEEecC
Confidence 999999755 444443
No 84
>PRK01742 tolB translocation protein TolB; Provisional
Probab=97.69 E-value=0.016 Score=52.78 Aligned_cols=131 Identities=12% Similarity=0.047 Sum_probs=75.2
Q ss_pred eEEEEecCCce-EEeeeecCcCccCeEEcCCCc-EEEEeCC---CceEEEe-CCC-eEEEEeccCCccccCccceEEcCC
Q 022967 98 WIKRLHKNGTW-ENWKLIGGDTLLGITTTQENE-ILVCDAD---KGLLKVT-EEG-VTVLASHVNGSRINLADDLIAATD 170 (289)
Q Consensus 98 ~i~~~~~~g~~-~~~~~~~~~p~~gl~~d~~g~-l~v~~~~---~~i~~~~-~~g-~~~~~~~~~~~~~~~~~~l~~~~d 170 (289)
.|+.++.+|.- ..+........ ...+.+||+ |.++... ..|+.++ .+| .+.+.. ..+ ....+++.||
T Consensus 185 ~i~i~d~dg~~~~~lt~~~~~v~-~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~-~~g----~~~~~~wSPD 258 (429)
T PRK01742 185 EVRVADYDGFNQFIVNRSSQPLM-SPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVAS-FRG----HNGAPAFSPD 258 (429)
T ss_pred EEEEECCCCCCceEeccCCCccc-cceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEec-CCC----ccCceeECCC
Confidence 45555544532 22222222344 788999996 4333222 2488888 556 554432 221 2236789999
Q ss_pred Cc-EEEeeCCCccCccccccccceecCCCEEEEEeCCCCeEEEeeCCCCCcceEEEecCCCEEEEEeC--CCCeEEEEEe
Q 022967 171 GS-IYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANGVALSKDEDYLVVCET--FKFRCLKYWL 247 (289)
Q Consensus 171 G~-lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~p~gl~~~~d~~~l~v~~~--~~~~i~~~~~ 247 (289)
|+ |+++... .+.-.||.+|.++++...+..+.......+|+|||+.++++.. +.-+|+.++.
T Consensus 259 G~~La~~~~~---------------~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~ 323 (429)
T PRK01742 259 GSRLAFASSK---------------DGVLNIYVMGANGGTPSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSA 323 (429)
T ss_pred CCEEEEEEec---------------CCcEEEEEEECCCCCeEeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEEC
Confidence 96 5554321 1123589999887776666444444567899999998777643 3345666665
Q ss_pred cC
Q 022967 248 KG 249 (289)
Q Consensus 248 ~~ 249 (289)
.+
T Consensus 324 ~~ 325 (429)
T PRK01742 324 SG 325 (429)
T ss_pred CC
Confidence 44
No 85
>PRK04043 tolB translocation protein TolB; Provisional
Probab=97.64 E-value=0.0084 Score=54.40 Aligned_cols=133 Identities=15% Similarity=0.097 Sum_probs=81.1
Q ss_pred eEEEEecCCceEEeeeecCcCccCeEEcCCCc--EEEEeCC---CceEEEe-CCC-eEEEEeccCCccccCccceEEcCC
Q 022967 98 WIKRLHKNGTWENWKLIGGDTLLGITTTQENE--ILVCDAD---KGLLKVT-EEG-VTVLASHVNGSRINLADDLIAATD 170 (289)
Q Consensus 98 ~i~~~~~~g~~~~~~~~~~~p~~gl~~d~~g~--l~v~~~~---~~i~~~~-~~g-~~~~~~~~~~~~~~~~~~l~~~~d 170 (289)
+|+..|.||.-.......+... ...+.+||+ +|++... ..|+.++ ..| .+.+.. ..+ ......+.||
T Consensus 170 ~l~~~d~dg~~~~~~~~~~~~~-~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~-~~g----~~~~~~~SPD 243 (419)
T PRK04043 170 NIVLADYTLTYQKVIVKGGLNI-FPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIAS-SQG----MLVVSDVSKD 243 (419)
T ss_pred eEEEECCCCCceeEEccCCCeE-eEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEec-CCC----cEEeeEECCC
Confidence 5666666775333222223333 677888885 6654432 3489999 667 666543 221 1223468999
Q ss_pred C-cEEEeeCCCccCccccccccceecCCCEEEEEeCCCCeEEEeeCCCCCcceEEEecCCCEEEEEeC--CCCeEEEEEe
Q 022967 171 G-SIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANGVALSKDEDYLVVCET--FKFRCLKYWL 247 (289)
Q Consensus 171 G-~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~p~gl~~~~d~~~l~v~~~--~~~~i~~~~~ 247 (289)
| .|.++... .+...||.++.++++.+.+......-..-.|+|||+.++++.. +...|+++++
T Consensus 244 G~~la~~~~~---------------~g~~~Iy~~dl~~g~~~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl 308 (419)
T PRK04043 244 GSKLLLTMAP---------------KGQPDIYLYDTNTKTLTQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKL 308 (419)
T ss_pred CCEEEEEEcc---------------CCCcEEEEEECCCCcEEEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEEC
Confidence 9 46665432 1246799999888877665433222233479999998888753 3347999998
Q ss_pred cCCC
Q 022967 248 KGES 251 (289)
Q Consensus 248 ~~~~ 251 (289)
++..
T Consensus 309 ~~g~ 312 (419)
T PRK04043 309 NSGS 312 (419)
T ss_pred CCCC
Confidence 7643
No 86
>PTZ00421 coronin; Provisional
Probab=97.62 E-value=0.054 Score=50.20 Aligned_cols=149 Identities=16% Similarity=0.105 Sum_probs=87.8
Q ss_pred CcceEEEcc-CCCE-EEEecCCeEEEEe-cCCc--------eEEeeeecCcCccCeEEcCCC-cEEEE-eCCCceEEEe-
Q 022967 78 GPEDVCVDR-NGVL-YTATRDGWIKRLH-KNGT--------WENWKLIGGDTLLGITTTQEN-EILVC-DADKGLLKVT- 143 (289)
Q Consensus 78 ~p~~l~~d~-~g~l-~v~~~~g~i~~~~-~~g~--------~~~~~~~~~~p~~gl~~d~~g-~l~v~-~~~~~i~~~~- 143 (289)
.-.++++.+ ++++ +++..++.|..|+ .++. ...+........ .++|++++ +++++ ..+..|..+|
T Consensus 77 ~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~-~l~f~P~~~~iLaSgs~DgtVrIWDl 155 (493)
T PTZ00421 77 PIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVG-IVSFHPSAMNVLASAGADMVVNVWDV 155 (493)
T ss_pred CEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEE-EEEeCcCCCCEEEEEeCCCEEEEEEC
Confidence 346788888 6664 4677889999998 3332 112222223344 78898865 45554 3334466667
Q ss_pred CCC--eEEEEeccCCccccCccceEEcCCCcEEEeeCCCccCccccccccceecCCCEEEEEeCCCCeEEEeeCCC--CC
Q 022967 144 EEG--VTVLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSL--FF 219 (289)
Q Consensus 144 ~~g--~~~~~~~~~~~~~~~~~~l~~~~dG~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~--~~ 219 (289)
..+ ...+.. . .....++++.++|.+.++... .+.|..+|+.+++......+. ..
T Consensus 156 ~tg~~~~~l~~-h----~~~V~sla~spdG~lLatgs~-----------------Dg~IrIwD~rsg~~v~tl~~H~~~~ 213 (493)
T PTZ00421 156 ERGKAVEVIKC-H----SDQITSLEWNLDGSLLCTTSK-----------------DKKLNIIDPRDGTIVSSVEAHASAK 213 (493)
T ss_pred CCCeEEEEEcC-C----CCceEEEEEECCCCEEEEecC-----------------CCEEEEEECCCCcEEEEEecCCCCc
Confidence 555 333211 1 124678999999987776432 467888898766543222221 12
Q ss_pred cceEEEecCCCEEEEEeC---CCCeEEEEEecC
Q 022967 220 ANGVALSKDEDYLVVCET---FKFRCLKYWLKG 249 (289)
Q Consensus 220 p~gl~~~~d~~~l~v~~~---~~~~i~~~~~~~ 249 (289)
...+.|.++++.+..+.. ..+.|..||+..
T Consensus 214 ~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~ 246 (493)
T PTZ00421 214 SQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRK 246 (493)
T ss_pred ceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCC
Confidence 345677887775554322 246788888753
No 87
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.59 E-value=0.0077 Score=50.68 Aligned_cols=159 Identities=18% Similarity=0.169 Sum_probs=90.6
Q ss_pred eEeccCCcCCcceEEEccCCCEEEEe-cCCeEEEEe--cCCceEE-----eee--ec--CcCccCeEEcCCC-cEEEEeC
Q 022967 69 TRLGEGILNGPEDVCVDRNGVLYTAT-RDGWIKRLH--KNGTWEN-----WKL--IG--GDTLLGITTTQEN-EILVCDA 135 (289)
Q Consensus 69 ~~~~~~~~~~p~~l~~d~~g~l~v~~-~~g~i~~~~--~~g~~~~-----~~~--~~--~~p~~gl~~d~~g-~l~v~~~ 135 (289)
..++..++..||+|..-.+|...+++ .+.+++.+. +++.... +.. .. +.-..|+|+|+.+ +||++-.
T Consensus 121 rtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKE 200 (316)
T COG3204 121 RTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVDADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKE 200 (316)
T ss_pred EEecccccCChhHeEEecCCEEEEEehhcceEEEEEEcCCccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEc
Confidence 34555558889999887655555554 677787776 4432221 111 01 1122389999754 7999864
Q ss_pred C--CceEEEe--CCCeEEEEec--cCC--ccccCccceEEcC-CCcEEE-eeCCCccCccccccccceecCCCEEEEEeC
Q 022967 136 D--KGLLKVT--EEGVTVLASH--VNG--SRINLADDLIAAT-DGSIYF-SVASTKFGLHNWGLDLLEAKPHGKLLKYDP 205 (289)
Q Consensus 136 ~--~~i~~~~--~~g~~~~~~~--~~~--~~~~~~~~l~~~~-dG~lyv-~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~ 205 (289)
. .+|+.++ ++....-... ... --..-..++.+++ .++++| ++.+ ..|..+|.
T Consensus 201 r~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl~~~~~~~~LLVLS~ES------------------r~l~Evd~ 262 (316)
T COG3204 201 RNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSGLEFNAITNSLLVLSDES------------------RRLLEVDL 262 (316)
T ss_pred cCCcEEEEEecCCcccccccccCcccccceEeeccccceecCCCCcEEEEecCC------------------ceEEEEec
Confidence 4 4688887 2232111111 011 1123456778886 456555 4433 56777777
Q ss_pred CCCeEEEe---------eCCCCCcceEEEecCCCEEEEEeCCCCeEEEEEe
Q 022967 206 SLNETSIL---------LDSLFFANGVALSKDEDYLVVCETFKFRCLKYWL 247 (289)
Q Consensus 206 ~~~~~~~~---------~~~~~~p~gl~~~~d~~~l~v~~~~~~~i~~~~~ 247 (289)
++.-.+.+ ......+-|++++.+|. ||++.- -+..|+|..
T Consensus 263 ~G~~~~~lsL~~g~~gL~~dipqaEGiamDd~g~-lYIvSE-Pnlfy~F~~ 311 (316)
T COG3204 263 SGEVIELLSLTKGNHGLSSDIPQAEGIAMDDDGN-LYIVSE-PNLFYRFTP 311 (316)
T ss_pred CCCeeeeEEeccCCCCCcccCCCcceeEECCCCC-EEEEec-CCcceeccc
Confidence 64333322 13356678999998888 888743 467777754
No 88
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=97.59 E-value=0.033 Score=46.75 Aligned_cols=170 Identities=15% Similarity=0.187 Sum_probs=106.1
Q ss_pred ceEEEccCCCEEEEecCCeEEEEe-cCCc-eEEeeeecCcCccCeEEcC-CCcEEEEeCC-CceEEEe-CCC--eEEEEe
Q 022967 80 EDVCVDRNGVLYTATRDGWIKRLH-KNGT-WENWKLIGGDTLLGITTTQ-ENEILVCDAD-KGLLKVT-EEG--VTVLAS 152 (289)
Q Consensus 80 ~~l~~d~~g~l~v~~~~g~i~~~~-~~g~-~~~~~~~~~~p~~gl~~d~-~g~l~v~~~~-~~i~~~~-~~g--~~~~~~ 152 (289)
.+..+-.|+.|.+++.+.....|| ..|+ ...|....+..+ +|.+.+ +++.||+..- .....+| .+| .+.+..
T Consensus 149 ScC~f~dD~~ilT~SGD~TCalWDie~g~~~~~f~GH~gDV~-slsl~p~~~ntFvSg~cD~~aklWD~R~~~c~qtF~g 227 (343)
T KOG0286|consen 149 SCCRFLDDNHILTGSGDMTCALWDIETGQQTQVFHGHTGDVM-SLSLSPSDGNTFVSGGCDKSAKLWDVRSGQCVQTFEG 227 (343)
T ss_pred EEEEEcCCCceEecCCCceEEEEEcccceEEEEecCCcccEE-EEecCCCCCCeEEecccccceeeeeccCcceeEeecc
Confidence 344555588999999998889998 5664 555666666777 888887 8899997533 3344555 444 555533
Q ss_pred ccCCccccCccceEEcCCCcEEEeeCCCccCccccccccceecCCCEEEEEeCCCCeEEEeeCC--CCCcceEEEecCCC
Q 022967 153 HVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDS--LFFANGVALSKDED 230 (289)
Q Consensus 153 ~~~~~~~~~~~~l~~~~dG~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~--~~~p~gl~~~~d~~ 230 (289)
.. .-.+.+.+-|+|.-+.+-.. ..+.++|-+..+ .++..+... ....++++|+..|+
T Consensus 228 he-----sDINsv~ffP~G~afatGSD---------------D~tcRlyDlRaD-~~~a~ys~~~~~~gitSv~FS~SGR 286 (343)
T KOG0286|consen 228 HE-----SDINSVRFFPSGDAFATGSD---------------DATCRLYDLRAD-QELAVYSHDSIICGITSVAFSKSGR 286 (343)
T ss_pred cc-----cccceEEEccCCCeeeecCC---------------CceeEEEeecCC-cEEeeeccCcccCCceeEEEccccc
Confidence 21 13678899999987766432 123455555444 455555432 34458899999999
Q ss_pred EEEEEeCCCCeEEEEEe-cCCCCcceeeeeccCCCCCCceeeCCCCC
Q 022967 231 YLVVCETFKFRCLKYWL-KGESKEQTEIFVENLPGGPDNIKLAPDGS 276 (289)
Q Consensus 231 ~l~v~~~~~~~i~~~~~-~~~~~~~~~~~~~~~~~~p~~i~~d~~G~ 276 (289)
.||.. .....+.+||. .++..+ .+. ...+...+|.+.+||.
T Consensus 287 lLfag-y~d~~c~vWDtlk~e~vg---~L~-GHeNRvScl~~s~DG~ 328 (343)
T KOG0286|consen 287 LLFAG-YDDFTCNVWDTLKGERVG---VLA-GHENRVSCLGVSPDGM 328 (343)
T ss_pred EEEee-ecCCceeEeeccccceEE---Eee-ccCCeeEEEEECCCCc
Confidence 76665 45678888874 232211 121 3334556677777764
No 89
>PF05787 DUF839: Bacterial protein of unknown function (DUF839); InterPro: IPR008557 This family consists of bacterial proteins of unknown function.
Probab=97.58 E-value=0.0023 Score=59.42 Aligned_cols=78 Identities=19% Similarity=0.218 Sum_probs=46.6
Q ss_pred ccccCccceEEcCCCcEEEeeCCCccCcc--ccc-----cccceecCCCEEEEEeCCCCeEEEeeCC--CCCcceEEEec
Q 022967 157 SRINLADDLIAATDGSIYFSVASTKFGLH--NWG-----LDLLEAKPHGKLLKYDPSLNETSILLDS--LFFANGVALSK 227 (289)
Q Consensus 157 ~~~~~~~~l~~~~dG~lyv~~~~~~~~~~--~~~-----~~~~~~~~~g~i~~~~~~~~~~~~~~~~--~~~p~gl~~~~ 227 (289)
..+..|..|+++++|+|||.......... ... ..+....+.. ++..++..+++..+... ..-..|++|+|
T Consensus 433 ~~f~sPDNL~~d~~G~LwI~eD~~~~~~~l~g~t~~G~~~~~~~~~G~~-~~~~~~~~g~~~rf~~~P~gaE~tG~~fsp 511 (524)
T PF05787_consen 433 NGFASPDNLAFDPDGNLWIQEDGGGSNNNLPGVTPDGEVYDFARNDGNN-VWAYDPDTGELKRFLVGPNGAEITGPCFSP 511 (524)
T ss_pred CCcCCCCceEECCCCCEEEEeCCCCCCcccccccccCceeeeeecccce-eeeccccccceeeeccCCCCcccccceECC
Confidence 45678999999999999997664211100 000 0000011111 55566777777766543 23347899999
Q ss_pred CCCEEEEE
Q 022967 228 DEDYLVVC 235 (289)
Q Consensus 228 d~~~l~v~ 235 (289)
|+++|||.
T Consensus 512 Dg~tlFvn 519 (524)
T PF05787_consen 512 DGRTLFVN 519 (524)
T ss_pred CCCEEEEE
Confidence 99999986
No 90
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=97.55 E-value=0.015 Score=47.69 Aligned_cols=141 Identities=12% Similarity=0.090 Sum_probs=87.6
Q ss_pred ccCCCEEEEecCCeEEEEe-cCCceEEeeeecCcCccCeEEcCCCcEEEEeCCCceEEEeCCCeEEEEe-ccCCccccCc
Q 022967 85 DRNGVLYTATRDGWIKRLH-KNGTWENWKLIGGDTLLGITTTQENEILVCDADKGLLKVTEEGVTVLAS-HVNGSRINLA 162 (289)
Q Consensus 85 d~~g~l~v~~~~g~i~~~~-~~g~~~~~~~~~~~p~~gl~~d~~g~l~v~~~~~~i~~~~~~g~~~~~~-~~~~~~~~~~ 162 (289)
..+..+..+..++.|..|| .+|...........+. ++.+..+|++.....+.+|..++.+.+..+.. +.+ . ..
T Consensus 153 ~eD~~iLSSadd~tVRLWD~rTgt~v~sL~~~s~Vt-SlEvs~dG~ilTia~gssV~Fwdaksf~~lKs~k~P---~-nV 227 (334)
T KOG0278|consen 153 HEDKCILSSADDKTVRLWDHRTGTEVQSLEFNSPVT-SLEVSQDGRILTIAYGSSVKFWDAKSFGLLKSYKMP---C-NV 227 (334)
T ss_pred ccCceEEeeccCCceEEEEeccCcEEEEEecCCCCc-ceeeccCCCEEEEecCceeEEeccccccceeeccCc---c-cc
Confidence 3355555556778888898 5665444333334445 99999999987766667777777433222211 111 0 12
Q ss_pred cceEEcCCCcEEEeeCCCccCccccccccceecCCCEEEEEeCCCCeEE-EeeCCCCCc-ceEEEecCCCEEEEEeCCCC
Q 022967 163 DDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETS-ILLDSLFFA-NGVALSKDEDYLVVCETFKF 240 (289)
Q Consensus 163 ~~l~~~~dG~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~-~~~~~~~~p-~gl~~~~d~~~l~v~~~~~~ 240 (289)
..-...|+-.+||+-+. ...+++||-++++-. .+..+-..| ..+.|+|||. +|.+-+..+
T Consensus 228 ~SASL~P~k~~fVaGge-----------------d~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFSPdGE-~yAsGSEDG 289 (334)
T KOG0278|consen 228 ESASLHPKKEFFVAGGE-----------------DFKVYKFDYNTGEEIGSYNKGHFGPVHCVRFSPDGE-LYASGSEDG 289 (334)
T ss_pred ccccccCCCceEEecCc-----------------ceEEEEEeccCCceeeecccCCCCceEEEEECCCCc-eeeccCCCc
Confidence 23345677788887542 467999998877533 322333333 5678999998 999877777
Q ss_pred eEEEEEec
Q 022967 241 RCLKYWLK 248 (289)
Q Consensus 241 ~i~~~~~~ 248 (289)
.|+.|...
T Consensus 290 TirlWQt~ 297 (334)
T KOG0278|consen 290 TIRLWQTT 297 (334)
T ss_pred eEEEEEec
Confidence 77766543
No 91
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=97.54 E-value=0.0067 Score=54.58 Aligned_cols=132 Identities=15% Similarity=0.155 Sum_probs=78.6
Q ss_pred CCCEEEEecCCeEEEEe-cCCceEEeeeecCcCccCeEEcCCCcEEEEeCCCceEEEe-CCC-eEEEEeccCCccccCcc
Q 022967 87 NGVLYTATRDGWIKRLH-KNGTWENWKLIGGDTLLGITTTQENEILVCDADKGLLKVT-EEG-VTVLASHVNGSRINLAD 163 (289)
Q Consensus 87 ~g~l~v~~~~g~i~~~~-~~g~~~~~~~~~~~p~~gl~~d~~g~l~v~~~~~~i~~~~-~~g-~~~~~~~~~~~~~~~~~ 163 (289)
++.+|+.+.+|.++.++ .+|+.. |....+.+. .++.+ +++||+++....++.++ .+| ...-.....+.. ..
T Consensus 256 ~~~vy~~~~~g~l~ald~~tG~~~-W~~~~~~~~-~~~~~-~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~---~~ 329 (394)
T PRK11138 256 GGVVYALAYNGNLVALDLRSGQIV-WKREYGSVN-DFAVD-GGRIYLVDQNDRVYALDTRGGVELWSQSDLLHRL---LT 329 (394)
T ss_pred CCEEEEEEcCCeEEEEECCCCCEE-EeecCCCcc-CcEEE-CCEEEEEcCCCeEEEEECCCCcEEEcccccCCCc---cc
Confidence 67899888889999999 577643 333233344 55553 67899998777899999 677 322111111111 11
Q ss_pred ceEEcCCCcEEEeeCCCccCccccccccceecCCCEEEEEeCCCCeEEEeeC--CCCCcceEEEecCCCEEEEEeCCCCe
Q 022967 164 DLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLD--SLFFANGVALSKDEDYLVVCETFKFR 241 (289)
Q Consensus 164 ~l~~~~dG~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~--~~~~p~gl~~~~d~~~l~v~~~~~~~ 241 (289)
..++ .+|+||+.+.. |.|+.+|+++|+..--.. +........+ .++.|||... .+.
T Consensus 330 sp~v-~~g~l~v~~~~------------------G~l~~ld~~tG~~~~~~~~~~~~~~s~P~~--~~~~l~v~t~-~G~ 387 (394)
T PRK11138 330 APVL-YNGYLVVGDSE------------------GYLHWINREDGRFVAQQKVDSSGFLSEPVV--ADDKLLIQAR-DGT 387 (394)
T ss_pred CCEE-ECCEEEEEeCC------------------CEEEEEECCCCCEEEEEEcCCCcceeCCEE--ECCEEEEEeC-Cce
Confidence 2223 37899998743 789999998887542211 1111111122 2445998854 477
Q ss_pred EEEEE
Q 022967 242 CLKYW 246 (289)
Q Consensus 242 i~~~~ 246 (289)
|+.+.
T Consensus 388 l~~~~ 392 (394)
T PRK11138 388 VYAIT 392 (394)
T ss_pred EEEEe
Confidence 88775
No 92
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=97.54 E-value=0.0083 Score=51.67 Aligned_cols=187 Identities=12% Similarity=0.109 Sum_probs=112.1
Q ss_pred cCCcceEEEcc-CC-CEEEEecCCeEEEEe--cCC------------ceEEeeeecCcCccCeEEcCCCcEEEEeCC--C
Q 022967 76 LNGPEDVCVDR-NG-VLYTATRDGWIKRLH--KNG------------TWENWKLIGGDTLLGITTTQENEILVCDAD--K 137 (289)
Q Consensus 76 ~~~p~~l~~d~-~g-~l~v~~~~g~i~~~~--~~g------------~~~~~~~~~~~p~~gl~~d~~g~l~v~~~~--~ 137 (289)
-..-.+++.-| .+ .|-++...| |..+. ..+ ..+.+...+..|++.|.+.+||..|++... .
T Consensus 140 QrnvtclawRPlsaselavgCr~g-IciW~~s~tln~~r~~~~~s~~~~qvl~~pgh~pVtsmqwn~dgt~l~tAS~gss 218 (445)
T KOG2139|consen 140 QRNVTCLAWRPLSASELAVGCRAG-ICIWSDSRTLNANRNIRMMSTHHLQVLQDPGHNPVTSMQWNEDGTILVTASFGSS 218 (445)
T ss_pred hcceeEEEeccCCcceeeeeecce-eEEEEcCcccccccccccccccchhheeCCCCceeeEEEEcCCCCEEeecccCcc
Confidence 34566777777 23 345777655 65554 222 112223334456679999999998887543 3
Q ss_pred ceEEEe-CCC-eEEEEeccCCccccCccceEEcCCCcEEEeeCCCccCccccccccceecCCCEEEEEeCCC--CeEEEe
Q 022967 138 GLLKVT-EEG-VTVLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSL--NETSIL 213 (289)
Q Consensus 138 ~i~~~~-~~g-~~~~~~~~~~~~~~~~~~l~~~~dG~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~--~~~~~~ 213 (289)
.|..++ +.| ..++... ......-+.+.|||..+|+..- .+++++-... ...+..
T Consensus 219 si~iWdpdtg~~~pL~~~----glgg~slLkwSPdgd~lfaAt~------------------davfrlw~e~q~wt~erw 276 (445)
T KOG2139|consen 219 SIMIWDPDTGQKIPLIPK----GLGGFSLLKWSPDGDVLFAATC------------------DAVFRLWQENQSWTKERW 276 (445)
T ss_pred eEEEEcCCCCCccccccc----CCCceeeEEEcCCCCEEEEecc------------------cceeeeehhcccceecce
Confidence 477777 556 4444321 1123456789999987776542 2344443221 222222
Q ss_pred eCCCCCcceEEEecCCCEEEEEeCCCCeEEEEEecCCCCc------ceeeee-cc------------CCCCCCceeeCCC
Q 022967 214 LDSLFFANGVALSKDEDYLVVCETFKFRCLKYWLKGESKE------QTEIFV-EN------------LPGGPDNIKLAPD 274 (289)
Q Consensus 214 ~~~~~~p~gl~~~~d~~~l~v~~~~~~~i~~~~~~~~~~~------~~~~~~-~~------------~~~~p~~i~~d~~ 274 (289)
.-+....++-.|+|+|++|.++-.+.-+||....+++... .++... .. ..+.+..|+-|..
T Consensus 277 ~lgsgrvqtacWspcGsfLLf~~sgsp~lysl~f~~~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDps 356 (445)
T KOG2139|consen 277 ILGSGRVQTACWSPCGSFLLFACSGSPRLYSLTFDGEDSVFLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPS 356 (445)
T ss_pred eccCCceeeeeecCCCCEEEEEEcCCceEEEEeecCCCccccCcccceeeeeeccchhhhhhcCcccccCccceeeECCC
Confidence 2223355777899999999999999999999888754211 111111 11 1246778999999
Q ss_pred CCEEEEEeCcc
Q 022967 275 GSFWIAILQVF 285 (289)
Q Consensus 275 G~lwv~~~~g~ 285 (289)
|+..+....+.
T Consensus 357 GeyLav~fKg~ 367 (445)
T KOG2139|consen 357 GEYLAVIFKGQ 367 (445)
T ss_pred CCEEEEEEcCC
Confidence 98888877654
No 93
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=97.52 E-value=0.026 Score=49.78 Aligned_cols=142 Identities=13% Similarity=0.152 Sum_probs=80.2
Q ss_pred cCccCeEEcCCCcEEEEeCCCceEEEe--CCC--eEEEEeccCCccccCccceEEcCCCcEEEeeCCCccCccccccccc
Q 022967 117 DTLLGITTTQENEILVCDADKGLLKVT--EEG--VTVLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLL 192 (289)
Q Consensus 117 ~p~~gl~~d~~g~l~v~~~~~~i~~~~--~~g--~~~~~~~~~~~~~~~~~~l~~~~dG~lyv~~~~~~~~~~~~~~~~~ 192 (289)
.|++++..++.|+.+++....+-|.|. .+| +...... .. .-.....++.|||.|+.+-.
T Consensus 304 ~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~--~s-~v~~ts~~fHpDgLifgtgt-------------- 366 (506)
T KOG0289|consen 304 EPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDE--TS-DVEYTSAAFHPDGLIFGTGT-------------- 366 (506)
T ss_pred ccceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEeec--cc-cceeEEeeEcCCceEEeccC--------------
Confidence 344489999999877766556667665 566 4433222 11 12355789999998887643
Q ss_pred eecCCCEEEEEeCCCCe-EEEeeCCCCCcceEEEecCCCEEEEEeCCCCeEEEEEecCCCCcceeeeeccCCCCCCceee
Q 022967 193 EAKPHGKLLKYDPSLNE-TSILLDSLFFANGVALSKDEDYLVVCETFKFRCLKYWLKGESKEQTEIFVENLPGGPDNIKL 271 (289)
Q Consensus 193 ~~~~~g~i~~~~~~~~~-~~~~~~~~~~p~gl~~~~d~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~i~~ 271 (289)
..+.|-.+|.+.+. ...+...-.-...++|+.+|=+| ++......|..||+.- +.....+.-........+.+
T Consensus 367 ---~d~~vkiwdlks~~~~a~Fpght~~vk~i~FsENGY~L-at~add~~V~lwDLRK--l~n~kt~~l~~~~~v~s~~f 440 (506)
T KOG0289|consen 367 ---PDGVVKIWDLKSQTNVAKFPGHTGPVKAISFSENGYWL-ATAADDGSVKLWDLRK--LKNFKTIQLDEKKEVNSLSF 440 (506)
T ss_pred ---CCceEEEEEcCCccccccCCCCCCceeEEEeccCceEE-EEEecCCeEEEEEehh--hcccceeeccccccceeEEE
Confidence 24556666765333 22222222223568898766444 4445556699999853 22333332111112445888
Q ss_pred CCCCCEEEEE
Q 022967 272 APDGSFWIAI 281 (289)
Q Consensus 272 d~~G~lwv~~ 281 (289)
|..|.+.+..
T Consensus 441 D~SGt~L~~~ 450 (506)
T KOG0289|consen 441 DQSGTYLGIA 450 (506)
T ss_pred cCCCCeEEee
Confidence 9888665543
No 94
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=97.52 E-value=0.0043 Score=55.21 Aligned_cols=129 Identities=15% Similarity=0.181 Sum_probs=79.1
Q ss_pred EEEEecCC-eEEEEecC-CceEEeeeecCcCccCeEEcCCCc-EEEEeCCCceEEEe-CCC-eEEEEeccCCccccCccc
Q 022967 90 LYTATRDG-WIKRLHKN-GTWENWKLIGGDTLLGITTTQENE-ILVCDADKGLLKVT-EEG-VTVLASHVNGSRINLADD 164 (289)
Q Consensus 90 l~v~~~~g-~i~~~~~~-g~~~~~~~~~~~p~~gl~~d~~g~-l~v~~~~~~i~~~~-~~g-~~~~~~~~~~~~~~~~~~ 164 (289)
+.+++.+| .+-.++.+ |+.+.+....+... .+.++++|. +.+++....++.++ .+| .+.+..... ....+
T Consensus 374 ~vigt~dgD~l~iyd~~~~e~kr~e~~lg~I~-av~vs~dGK~~vvaNdr~el~vididngnv~~idkS~~----~lItd 448 (668)
T COG4946 374 DVIGTNDGDKLGIYDKDGGEVKRIEKDLGNIE-AVKVSPDGKKVVVANDRFELWVIDIDNGNVRLIDKSEY----GLITD 448 (668)
T ss_pred eEEeccCCceEEEEecCCceEEEeeCCccceE-EEEEcCCCcEEEEEcCceEEEEEEecCCCeeEeccccc----ceeEE
Confidence 44455554 56666643 45566666667777 888999997 66666556799999 888 766533222 24568
Q ss_pred eEEcCCCcEEEeeCCCccCccccccccceecCCCEEEEEeCCCCeEEEeeCCCCCcceEEEecCCCEEEEEe
Q 022967 165 LIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANGVALSKDEDYLVVCE 236 (289)
Q Consensus 165 l~~~~dG~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~p~gl~~~~d~~~l~v~~ 236 (289)
+++.|+++. ++ |+++ ++--.-.|..+|.+++++-.+...-..--.-+|+||+++||.-.
T Consensus 449 f~~~~nsr~-iA-----YafP-------~gy~tq~Iklydm~~~Kiy~vTT~ta~DfsPaFD~d~ryLYfLs 507 (668)
T COG4946 449 FDWHPNSRW-IA-----YAFP-------EGYYTQSIKLYDMDGGKIYDVTTPTAYDFSPAFDPDGRYLYFLS 507 (668)
T ss_pred EEEcCCcee-EE-----EecC-------cceeeeeEEEEecCCCeEEEecCCcccccCcccCCCCcEEEEEe
Confidence 888888874 33 2221 11112346677887766544433322233347899999999864
No 95
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=97.51 E-value=0.032 Score=50.46 Aligned_cols=132 Identities=11% Similarity=0.058 Sum_probs=77.6
Q ss_pred eEEEEecCCc-eEEeeeecCcCccCeEEcCCCc-EEEEeCC---CceEEEe-CCC-eEEEEeccCCccccCccceEEcCC
Q 022967 98 WIKRLHKNGT-WENWKLIGGDTLLGITTTQENE-ILVCDAD---KGLLKVT-EEG-VTVLASHVNGSRINLADDLIAATD 170 (289)
Q Consensus 98 ~i~~~~~~g~-~~~~~~~~~~p~~gl~~d~~g~-l~v~~~~---~~i~~~~-~~g-~~~~~~~~~~~~~~~~~~l~~~~d 170 (289)
.|+..+.+|. ...+........ ..++.+||+ |+++... ..|+.++ .+| .+.+.. ..+ ....+++.||
T Consensus 171 ~l~~~d~~g~~~~~l~~~~~~~~-~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~~~-~~~----~~~~~~~spD 244 (417)
T TIGR02800 171 ELQVADYDGANPQTITRSREPIL-SPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREKVAS-FPG----MNGAPAFSPD 244 (417)
T ss_pred eEEEEcCCCCCCEEeecCCCcee-cccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEeec-CCC----CccceEECCC
Confidence 4666665543 333333222344 677888886 4444322 3488888 666 544432 111 2345789999
Q ss_pred Cc-EEEeeCCCccCccccccccceecCCCEEEEEeCCCCeEEEeeCCCCCcceEEEecCCCEEEEEeC--CCCeEEEEEe
Q 022967 171 GS-IYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANGVALSKDEDYLVVCET--FKFRCLKYWL 247 (289)
Q Consensus 171 G~-lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~p~gl~~~~d~~~l~v~~~--~~~~i~~~~~ 247 (289)
|. |+++... .....||.++.+++..+.+...........|++|+++|+++.. +...|+++++
T Consensus 245 g~~l~~~~~~---------------~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~ 309 (417)
T TIGR02800 245 GSKLAVSLSK---------------DGNPDIYVMDLDGKQLTRLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDA 309 (417)
T ss_pred CCEEEEEECC---------------CCCccEEEEECCCCCEEECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEEC
Confidence 85 7665322 1234699999887766655433333345689999998876543 2347888887
Q ss_pred cCC
Q 022967 248 KGE 250 (289)
Q Consensus 248 ~~~ 250 (289)
++.
T Consensus 310 ~~~ 312 (417)
T TIGR02800 310 DGG 312 (417)
T ss_pred CCC
Confidence 654
No 96
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=97.48 E-value=0.017 Score=46.64 Aligned_cols=131 Identities=16% Similarity=0.093 Sum_probs=76.8
Q ss_pred eEEEEe-cCCceEEeeeec-CcCccCeEEcCCCc-EEEEe--CCCceEEEeCCC--eEEEEeccCCccccCccceEEcCC
Q 022967 98 WIKRLH-KNGTWENWKLIG-GDTLLGITTTQENE-ILVCD--ADKGLLKVTEEG--VTVLASHVNGSRINLADDLIAATD 170 (289)
Q Consensus 98 ~i~~~~-~~g~~~~~~~~~-~~p~~gl~~d~~g~-l~v~~--~~~~i~~~~~~g--~~~~~~~~~~~~~~~~~~l~~~~d 170 (289)
.|++++ .+.....+.... +... .+++.++|+ +.+.. ....+..++.++ +..+. ....+.|.++|+
T Consensus 40 ~l~~~~~~~~~~~~i~l~~~~~I~-~~~WsP~g~~favi~g~~~~~v~lyd~~~~~i~~~~-------~~~~n~i~wsP~ 111 (194)
T PF08662_consen 40 ELFYLNEKNIPVESIELKKEGPIH-DVAWSPNGNEFAVIYGSMPAKVTLYDVKGKKIFSFG-------TQPRNTISWSPD 111 (194)
T ss_pred EEEEEecCCCccceeeccCCCceE-EEEECcCCCEEEEEEccCCcccEEEcCcccEeEeec-------CCCceEEEECCC
Confidence 466666 333333332222 2345 899999886 43442 123466666334 32221 124568999999
Q ss_pred CcEEEeeCCCccCccccccccceecCCCEEEEEeCCCCeEEEeeCCCCCcceEEEecCCCEEEEEeCC-----CCeEEEE
Q 022967 171 GSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANGVALSKDEDYLVVCETF-----KFRCLKY 245 (289)
Q Consensus 171 G~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~p~gl~~~~d~~~l~v~~~~-----~~~i~~~ 245 (289)
|++.+..+. ++..|.|..+|.++.+.... ........++|+|||+++..+.+. .+.+..|
T Consensus 112 G~~l~~~g~--------------~n~~G~l~~wd~~~~~~i~~-~~~~~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw 176 (194)
T PF08662_consen 112 GRFLVLAGF--------------GNLNGDLEFWDVRKKKKIST-FEHSDATDVEWSPDGRYLATATTSPRLRVDNGFKIW 176 (194)
T ss_pred CCEEEEEEc--------------cCCCcEEEEEECCCCEEeec-cccCcEEEEEEcCCCCEEEEEEeccceeccccEEEE
Confidence 987665432 11236788888874443222 223346789999999988877653 4566777
Q ss_pred EecCCC
Q 022967 246 WLKGES 251 (289)
Q Consensus 246 ~~~~~~ 251 (289)
+..|+.
T Consensus 177 ~~~G~~ 182 (194)
T PF08662_consen 177 SFQGRL 182 (194)
T ss_pred EecCeE
Confidence 777753
No 97
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=97.47 E-value=0.024 Score=47.18 Aligned_cols=188 Identities=14% Similarity=0.190 Sum_probs=105.1
Q ss_pred CCcceEEEccCCC-EEEEecCCeEEEEecCCceE-Eeeeec--CcCccCeEEcCCC-cEEEEeC-CCceEEE-eCCCeEE
Q 022967 77 NGPEDVCVDRNGV-LYTATRDGWIKRLHKNGTWE-NWKLIG--GDTLLGITTTQEN-EILVCDA-DKGLLKV-TEEGVTV 149 (289)
Q Consensus 77 ~~p~~l~~d~~g~-l~v~~~~g~i~~~~~~g~~~-~~~~~~--~~p~~gl~~d~~g-~l~v~~~-~~~i~~~-~~~g~~~ 149 (289)
..-.++++++|.+ +..++.+..|..++.-|... +....+ +-.. -+.|.|+. +.++... ..+.+++ |-++.+.
T Consensus 106 ~dVlsva~s~dn~qivSGSrDkTiklwnt~g~ck~t~~~~~~~~WVs-cvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l 184 (315)
T KOG0279|consen 106 KDVLSVAFSTDNRQIVSGSRDKTIKLWNTLGVCKYTIHEDSHREWVS-CVRFSPNESNPIIVSASWDKTVKVWNLRNCQL 184 (315)
T ss_pred CceEEEEecCCCceeecCCCcceeeeeeecccEEEEEecCCCcCcEE-EEEEcCCCCCcEEEEccCCceEEEEccCCcch
Confidence 4456688888655 45666788888887434322 122221 2234 67888764 4555433 3444444 4333111
Q ss_pred EEeccCCccccCccceEEcCCCcEEEeeCCCccCccccccccceecCCCEEEEEeCCCCeEEEeeCCCCCcceEEEecCC
Q 022967 150 LASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANGVALSKDE 229 (289)
Q Consensus 150 ~~~~~~~~~~~~~~~l~~~~dG~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~p~gl~~~~d~ 229 (289)
. ....+ .....+.+++.|||.+-.+.+. .|.++..|.+.++--...+.....+.++|+|..
T Consensus 185 ~-~~~~g-h~~~v~t~~vSpDGslcasGgk-----------------dg~~~LwdL~~~k~lysl~a~~~v~sl~fspnr 245 (315)
T KOG0279|consen 185 R-TTFIG-HSGYVNTVTVSPDGSLCASGGK-----------------DGEAMLWDLNEGKNLYSLEAFDIVNSLCFSPNR 245 (315)
T ss_pred h-hcccc-ccccEEEEEECCCCCEEecCCC-----------------CceEEEEEccCCceeEeccCCCeEeeEEecCCc
Confidence 1 11111 2246789999999999877432 466666666555544445666777899999864
Q ss_pred CEEEEEeCCCCeEEEEEecCCCC-cceee-eec--cCCCCCCc--eeeCCCC-CEEEEEeCccc
Q 022967 230 DYLVVCETFKFRCLKYWLKGESK-EQTEI-FVE--NLPGGPDN--IKLAPDG-SFWIAILQVFI 286 (289)
Q Consensus 230 ~~l~v~~~~~~~i~~~~~~~~~~-~~~~~-~~~--~~~~~p~~--i~~d~~G-~lwv~~~~g~i 286 (289)
.|++-.....|.+||++.... ..... +.. ...+.|.+ ++-..|| +||-+..++.|
T Consensus 246 --ywL~~at~~sIkIwdl~~~~~v~~l~~d~~g~s~~~~~~~clslaws~dG~tLf~g~td~~i 307 (315)
T KOG0279|consen 246 --YWLCAATATSIKIWDLESKAVVEELKLDGIGPSSKAGDPICLSLAWSADGQTLFAGYTDNVI 307 (315)
T ss_pred --eeEeeccCCceEEEeccchhhhhhccccccccccccCCcEEEEEEEcCCCcEEEeeecCCcE
Confidence 444444456688899876532 11111 110 11123444 5556778 67777666665
No 98
>PRK13684 Ycf48-like protein; Provisional
Probab=97.47 E-value=0.066 Score=47.10 Aligned_cols=142 Identities=16% Similarity=0.166 Sum_probs=69.3
Q ss_pred CcceEEEccCCCEEEEecCCeEEEEecCC-ceEEeeee---cCcCccCeEEcCCCcEEEEeCCCceEEEeCCC--eEEEE
Q 022967 78 GPEDVCVDRNGVLYTATRDGWIKRLHKNG-TWENWKLI---GGDTLLGITTTQENEILVCDADKGLLKVTEEG--VTVLA 151 (289)
Q Consensus 78 ~p~~l~~d~~g~l~v~~~~g~i~~~~~~g-~~~~~~~~---~~~p~~gl~~d~~g~l~v~~~~~~i~~~~~~g--~~~~~ 151 (289)
...+|++..+.+.|+....|.|++=...| .++..... ...+...++++. ++.|++.....+++-.+.| .+.+.
T Consensus 47 ~l~~v~F~d~~~g~avG~~G~il~T~DgG~tW~~~~~~~~~~~~~l~~v~~~~-~~~~~~G~~g~i~~S~DgG~tW~~~~ 125 (334)
T PRK13684 47 NLLDIAFTDPNHGWLVGSNRTLLETNDGGETWEERSLDLPEENFRLISISFKG-DEGWIVGQPSLLLHTTDGGKNWTRIP 125 (334)
T ss_pred ceEEEEEeCCCcEEEEECCCEEEEEcCCCCCceECccCCcccccceeeeEEcC-CcEEEeCCCceEEEECCCCCCCeEcc
Confidence 34556666555666433456666654333 34433221 112222777764 4577776445566665545 44432
Q ss_pred ec--cCCccccCccceEEcCCCcEEEeeCCCccCccccccccceecCCCEEEEEeCCCCeEEEeeCCC-CCcceEEEecC
Q 022967 152 SH--VNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSL-FFANGVALSKD 228 (289)
Q Consensus 152 ~~--~~~~~~~~~~~l~~~~dG~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~-~~p~gl~~~~d 228 (289)
.. .++ .+..+....++.+|+... .|.|++-+-.+...+.+..+. ...+.+.+.++
T Consensus 126 ~~~~~~~----~~~~i~~~~~~~~~~~g~------------------~G~i~~S~DgG~tW~~~~~~~~g~~~~i~~~~~ 183 (334)
T PRK13684 126 LSEKLPG----SPYLITALGPGTAEMATN------------------VGAIYRTTDGGKNWEALVEDAAGVVRNLRRSPD 183 (334)
T ss_pred CCcCCCC----CceEEEEECCCcceeeec------------------cceEEEECCCCCCceeCcCCCcceEEEEEECCC
Confidence 11 111 233343334445555432 356777654444555543332 23356777777
Q ss_pred CCEEEEEeCCCCeEEE
Q 022967 229 EDYLVVCETFKFRCLK 244 (289)
Q Consensus 229 ~~~l~v~~~~~~~i~~ 244 (289)
+..+.+. ....+++
T Consensus 184 g~~v~~g--~~G~i~~ 197 (334)
T PRK13684 184 GKYVAVS--SRGNFYS 197 (334)
T ss_pred CeEEEEe--CCceEEE
Confidence 7533333 2345554
No 99
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=97.47 E-value=0.031 Score=51.40 Aligned_cols=147 Identities=18% Similarity=0.161 Sum_probs=89.7
Q ss_pred eEEEccCCCEEEEe-cCCeEEEEec-CCc--eEEeeeecC-cCccCeEEcCCCcEEEEeCC-CceEEEe-CC-C--eEEE
Q 022967 81 DVCVDRNGVLYTAT-RDGWIKRLHK-NGT--WENWKLIGG-DTLLGITTTQENEILVCDAD-KGLLKVT-EE-G--VTVL 150 (289)
Q Consensus 81 ~l~~d~~g~l~v~~-~~g~i~~~~~-~g~--~~~~~~~~~-~p~~gl~~d~~g~l~v~~~~-~~i~~~~-~~-g--~~~~ 150 (289)
++.+.++|+..+.. .++.+..+.. .++ ......... ... +++|.++|.+.++... ..+..++ .+ + .+.+
T Consensus 164 ~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~-~~~fs~d~~~l~s~s~D~tiriwd~~~~~~~~~~l 242 (456)
T KOG0266|consen 164 CVDFSPDGRALAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVS-DVAFSPDGSYLLSGSDDKTLRIWDLKDDGRNLKTL 242 (456)
T ss_pred EEEEcCCCCeEEEccCCCcEEEeecccccchhhcccccccccee-eeEECCCCcEEEEecCCceEEEeeccCCCeEEEEe
Confidence 35666777766443 5555555543 222 111111122 234 8999999986666443 4455555 23 3 3444
Q ss_pred EeccCCccccCccceEEcCCCcEEEeeCCCccCccccccccceecCCCEEEEEeCCCCeEEEe-eCCCCCcceEEEecCC
Q 022967 151 ASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSIL-LDSLFFANGVALSKDE 229 (289)
Q Consensus 151 ~~~~~~~~~~~~~~l~~~~dG~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~-~~~~~~p~gl~~~~d~ 229 (289)
... ....+++++.++|++.++... .+.|..+|..+++.... .......++++|++|+
T Consensus 243 ~gH-----~~~v~~~~f~p~g~~i~Sgs~-----------------D~tvriWd~~~~~~~~~l~~hs~~is~~~f~~d~ 300 (456)
T KOG0266|consen 243 KGH-----STYVTSVAFSPDGNLLVSGSD-----------------DGTVRIWDVRTGECVRKLKGHSDGISGLAFSPDG 300 (456)
T ss_pred cCC-----CCceEEEEecCCCCEEEEecC-----------------CCcEEEEeccCCeEEEeeeccCCceEEEEECCCC
Confidence 221 124589999999988887543 35677777776665544 3444566889999999
Q ss_pred CEEEEEeCCCCeEEEEEecCCC
Q 022967 230 DYLVVCETFKFRCLKYWLKGES 251 (289)
Q Consensus 230 ~~l~v~~~~~~~i~~~~~~~~~ 251 (289)
+.|+.+ ...+.|..||..+..
T Consensus 301 ~~l~s~-s~d~~i~vwd~~~~~ 321 (456)
T KOG0266|consen 301 NLLVSA-SYDGTIRVWDLETGS 321 (456)
T ss_pred CEEEEc-CCCccEEEEECCCCc
Confidence 966666 667899999987543
No 100
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=97.46 E-value=0.00081 Score=46.65 Aligned_cols=62 Identities=18% Similarity=0.194 Sum_probs=44.7
Q ss_pred eEEEccC-CCEEEEe------------------cCCeEEEEec-CCceEEeeeecCcCccCeEEcCCCc-EEEEeCC-Cc
Q 022967 81 DVCVDRN-GVLYTAT------------------RDGWIKRLHK-NGTWENWKLIGGDTLLGITTTQENE-ILVCDAD-KG 138 (289)
Q Consensus 81 ~l~~d~~-g~l~v~~------------------~~g~i~~~~~-~g~~~~~~~~~~~p~~gl~~d~~g~-l~v~~~~-~~ 138 (289)
++.++++ |.+|+++ ..|+++++++ +++.+.+......|+ |+++.+|+. |+|++.. .+
T Consensus 2 dldv~~~~g~vYfTdsS~~~~~~~~~~~~le~~~~GRll~ydp~t~~~~vl~~~L~fpN-GVals~d~~~vlv~Et~~~R 80 (89)
T PF03088_consen 2 DLDVDQDTGTVYFTDSSSRYDRRDWVYDLLEGRPTGRLLRYDPSTKETTVLLDGLYFPN-GVALSPDESFVLVAETGRYR 80 (89)
T ss_dssp EEEE-TTT--EEEEES-SS--TTGHHHHHHHT---EEEEEEETTTTEEEEEEEEESSEE-EEEE-TTSSEEEEEEGGGTE
T ss_pred ceeEecCCCEEEEEeCccccCccceeeeeecCCCCcCEEEEECCCCeEEEehhCCCccC-eEEEcCCCCEEEEEeccCce
Confidence 5788886 9999753 3478999995 567778888888999 999999987 7788765 56
Q ss_pred eEEEe
Q 022967 139 LLKVT 143 (289)
Q Consensus 139 i~~~~ 143 (289)
|.|+.
T Consensus 81 i~ryw 85 (89)
T PF03088_consen 81 ILRYW 85 (89)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 77775
No 101
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=97.46 E-value=0.017 Score=47.37 Aligned_cols=169 Identities=14% Similarity=0.088 Sum_probs=96.9
Q ss_pred ecCCeEEEEe-cCCceE-EeeeecCcCccCeEEcCCCcEEEEeCCCceEEEe-CCC-eEEEEeccCCccccCccceEEcC
Q 022967 94 TRDGWIKRLH-KNGTWE-NWKLIGGDTLLGITTTQENEILVCDADKGLLKVT-EEG-VTVLASHVNGSRINLADDLIAAT 169 (289)
Q Consensus 94 ~~~g~i~~~~-~~g~~~-~~~~~~~~p~~gl~~d~~g~l~v~~~~~~i~~~~-~~g-~~~~~~~~~~~~~~~~~~l~~~~ 169 (289)
..+..|..+. .+|... .+....+..+ .|.+.++++...+.....|..+| .++ ..+++. ..+ ..+....+.|..
T Consensus 17 ~YDhTIRfWqa~tG~C~rTiqh~dsqVN-rLeiTpdk~~LAaa~~qhvRlyD~~S~np~Pv~t-~e~-h~kNVtaVgF~~ 93 (311)
T KOG0315|consen 17 GYDHTIRFWQALTGICSRTIQHPDSQVN-RLEITPDKKDLAAAGNQHVRLYDLNSNNPNPVAT-FEG-HTKNVTAVGFQC 93 (311)
T ss_pred cCcceeeeeehhcCeEEEEEecCcccee-eEEEcCCcchhhhccCCeeEEEEccCCCCCceeE-Eec-cCCceEEEEEee
Confidence 3667777776 567543 3334445566 88888888776666556677777 444 322222 111 113455777888
Q ss_pred CCcEEEeeCCCccCccccccccceecCCCEEEEEeCCCCeEEEeeCCCCCcceEEEecCCCEEEEEeCCCCeEEEEEecC
Q 022967 170 DGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANGVALSKDEDYLVVCETFKFRCLKYWLKG 249 (289)
Q Consensus 170 dG~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~p~gl~~~~d~~~l~v~~~~~~~i~~~~~~~ 249 (289)
||+.-.+.+ ..|.+-..|...-..........-.|.+.++|....|+++|. +..|+++|+..
T Consensus 94 dgrWMyTgs-----------------eDgt~kIWdlR~~~~qR~~~~~spVn~vvlhpnQteLis~dq-sg~irvWDl~~ 155 (311)
T KOG0315|consen 94 DGRWMYTGS-----------------EDGTVKIWDLRSLSCQRNYQHNSPVNTVVLHPNQTELISGDQ-SGNIRVWDLGE 155 (311)
T ss_pred cCeEEEecC-----------------CCceEEEEeccCcccchhccCCCCcceEEecCCcceEEeecC-CCcEEEEEccC
Confidence 897444322 234454455443222222222234478899998888999875 47899999865
Q ss_pred CCCcceeeeeccCCCCCCceeeCCCCCEEEEEeCcc
Q 022967 250 ESKEQTEIFVENLPGGPDNIKLAPDGSFWIAILQVF 285 (289)
Q Consensus 250 ~~~~~~~~~~~~~~~~p~~i~~d~~G~lwv~~~~g~ 285 (289)
.... .+ ++.........++++.||.+.+|..+.|
T Consensus 156 ~~c~-~~-liPe~~~~i~sl~v~~dgsml~a~nnkG 189 (311)
T KOG0315|consen 156 NSCT-HE-LIPEDDTSIQSLTVMPDGSMLAAANNKG 189 (311)
T ss_pred Cccc-cc-cCCCCCcceeeEEEcCCCcEEEEecCCc
Confidence 4221 11 1211123345688888888887766543
No 102
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=97.43 E-value=0.0054 Score=53.88 Aligned_cols=143 Identities=15% Similarity=0.141 Sum_probs=89.0
Q ss_pred cceEEEccCCCEE-EEecCCeEEEEe-cCC-ceEEeeeecCcCccCeEEcCCCcEEEEeCCCc-eEEEe--CCC-eEEEE
Q 022967 79 PEDVCVDRNGVLY-TATRDGWIKRLH-KNG-TWENWKLIGGDTLLGITTTQENEILVCDADKG-LLKVT--EEG-VTVLA 151 (289)
Q Consensus 79 p~~l~~d~~g~l~-v~~~~g~i~~~~-~~g-~~~~~~~~~~~p~~gl~~d~~g~l~v~~~~~~-i~~~~--~~g-~~~~~ 151 (289)
-.+.++.|||.|+ .+..++.|-.|+ .++ ....|....+ |++.|.|..+|...++..+.+ +..+| +.. +..+.
T Consensus 350 ~ts~~fHpDgLifgtgt~d~~vkiwdlks~~~~a~Fpght~-~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~ 428 (506)
T KOG0289|consen 350 YTSAAFHPDGLIFGTGTPDGVVKIWDLKSQTNVAKFPGHTG-PVKAISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQ 428 (506)
T ss_pred eEEeeEcCCceEEeccCCCceEEEEEcCCccccccCCCCCC-ceeEEEeccCceEEEEEecCCeEEEEEehhhcccceee
Confidence 3457888899988 667888777777 333 3444443333 444899998887666655555 77777 333 44443
Q ss_pred eccCCccccCccceEEcCCCcEEEeeCCCccCccccccccceecCCCEEEEEeCCCCeEEEe---eCCCCCcceEEEecC
Q 022967 152 SHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSIL---LDSLFFANGVALSKD 228 (289)
Q Consensus 152 ~~~~~~~~~~~~~l~~~~dG~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~---~~~~~~p~gl~~~~d 228 (289)
.. .....+.+.+|..|...+..+. .-.||.++..++.++.+ .+.....+++.|...
T Consensus 429 l~----~~~~v~s~~fD~SGt~L~~~g~-----------------~l~Vy~~~k~~k~W~~~~~~~~~sg~st~v~Fg~~ 487 (506)
T KOG0289|consen 429 LD----EKKEVNSLSFDQSGTYLGIAGS-----------------DLQVYICKKKTKSWTEIKELADHSGLSTGVRFGEH 487 (506)
T ss_pred cc----ccccceeEEEcCCCCeEEeecc-----------------eeEEEEEecccccceeeehhhhcccccceeeeccc
Confidence 21 1235779999999976555332 24688888776666544 233445677888754
Q ss_pred CCEEEEEeCCCCeEEEE
Q 022967 229 EDYLVVCETFKFRCLKY 245 (289)
Q Consensus 229 ~~~l~v~~~~~~~i~~~ 245 (289)
. -|++.++..++.++
T Consensus 488 a--q~l~s~smd~~l~~ 502 (506)
T KOG0289|consen 488 A--QYLASTSMDAILRL 502 (506)
T ss_pred c--eEEeeccchhheEE
Confidence 4 45665666666543
No 103
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=97.43 E-value=0.0078 Score=56.92 Aligned_cols=151 Identities=14% Similarity=0.149 Sum_probs=89.3
Q ss_pred CcceEEEccCCCEE-EEecCCeEEEEe-cCCceE-Eee--eecCcCccCeEEcCCCcEEEEeCCCceEEEe--CCC--eE
Q 022967 78 GPEDVCVDRNGVLY-TATRDGWIKRLH-KNGTWE-NWK--LIGGDTLLGITTTQENEILVCDADKGLLKVT--EEG--VT 148 (289)
Q Consensus 78 ~p~~l~~d~~g~l~-v~~~~g~i~~~~-~~g~~~-~~~--~~~~~p~~gl~~d~~g~l~v~~~~~~i~~~~--~~g--~~ 148 (289)
...+++++.=|+.. +|...|.|-+++ +.|-.. .+. .....+++|+++|.-+++.|+....|+..+. ... +.
T Consensus 450 ~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~ 529 (910)
T KOG1539|consen 450 NATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKK 529 (910)
T ss_pred ceEEEEEeccCceEEEeccCCeEEEEEcccCeeecccccCccccCceeEEEecCCCceEEEccCcceEEEEecCCcceee
Confidence 34567888766654 888999999999 666433 231 1123444599999888888887778887776 222 11
Q ss_pred EEEeccCCccccCccceEEcCCCcEEEeeCCCccCccccccccceecCCCEEEEEeCCCCeEE-EeeCCCCCcceEEEec
Q 022967 149 VLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETS-ILLDSLFFANGVALSK 227 (289)
Q Consensus 149 ~~~~~~~~~~~~~~~~l~~~~dG~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~-~~~~~~~~p~gl~~~~ 227 (289)
.+... ..+..+.-.....++.... ..-.|..+|..+.++. .+.......+.++|+|
T Consensus 530 ~l~l~------~~~~~iv~hr~s~l~a~~~-----------------ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~ 586 (910)
T KOG1539|consen 530 SLRLG------SSITGIVYHRVSDLLAIAL-----------------DDFSIRVVDVVTRKVVREFWGHGNRITDMTFSP 586 (910)
T ss_pred eeccC------CCcceeeeeehhhhhhhhc-----------------CceeEEEEEchhhhhhHHhhccccceeeeEeCC
Confidence 11110 0111221111111111100 1235777887654432 2333445568899999
Q ss_pred CCCEEEEEeCCCCeEEEEEecCCCC
Q 022967 228 DEDYLVVCETFKFRCLKYWLKGESK 252 (289)
Q Consensus 228 d~~~l~v~~~~~~~i~~~~~~~~~~ 252 (289)
||+||..+.. ...|+.||+....+
T Consensus 587 DgrWlisasm-D~tIr~wDlpt~~l 610 (910)
T KOG1539|consen 587 DGRWLISASM-DSTIRTWDLPTGTL 610 (910)
T ss_pred CCcEEEEeec-CCcEEEEeccCcce
Confidence 9999988865 48899999875443
No 104
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=97.42 E-value=0.035 Score=51.54 Aligned_cols=191 Identities=11% Similarity=0.093 Sum_probs=95.3
Q ss_pred EEEcc-CCCEEEEecCC------------------eEEEEe-cCCceEEeeeecC-------cCccCeEE---cCCCc--
Q 022967 82 VCVDR-NGVLYTATRDG------------------WIKRLH-KNGTWENWKLIGG-------DTLLGITT---TQENE-- 129 (289)
Q Consensus 82 l~~d~-~g~l~v~~~~g------------------~i~~~~-~~g~~~~~~~~~~-------~p~~gl~~---d~~g~-- 129 (289)
.++|+ +|.+|++..++ .|+.+| .+|+......... .+..-+.. +-+|.
T Consensus 222 pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~~ 301 (488)
T cd00216 222 PTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQTTPHDLWDYDGPNQPSLADIKPKDGKPV 301 (488)
T ss_pred eeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEeeCCCCCCcccccCCCCeEEeccccCCCee
Confidence 46675 67889887554 799998 5676543222110 00000111 12343
Q ss_pred --EEEEeCCCceEEEe-CCC-eEEEEeccCCccccCccceEEcCCCcEEEeeCCCccCccccccccceecCCCEEEEEeC
Q 022967 130 --ILVCDADKGLLKVT-EEG-VTVLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDP 205 (289)
Q Consensus 130 --l~v~~~~~~i~~~~-~~g-~~~~~~~~~~~~~~~~~~l~~~~dG~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~ 205 (289)
+|++.....++.+| .+| ...-... . ..+++.++ +.+|+.......+..+-..........|.|+.+|.
T Consensus 302 ~~V~~g~~~G~l~ald~~tG~~~W~~~~-~------~~~~~~~~-~~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~ 373 (488)
T cd00216 302 PAIVHAPKNGFFYVLDRTTGKLISARPE-V------EQPMAYDP-GLVYLGAFHIPLGLPPQKKKRCKKPGKGGLAALDP 373 (488)
T ss_pred EEEEEECCCceEEEEECCCCcEeeEeEe-e------ccccccCC-ceEEEccccccccCcccccCCCCCCCceEEEEEeC
Confidence 66666545689999 777 3221111 1 12344454 77888542211111000000001123578999998
Q ss_pred CCCeEEEeeCCCC--------Cc---ceEEEecCCCEEEEEeCCCCeEEEEEecCCCCcceeeeeccCCCCCCceeeCCC
Q 022967 206 SLNETSILLDSLF--------FA---NGVALSKDEDYLVVCETFKFRCLKYWLKGESKEQTEIFVENLPGGPDNIKLAPD 274 (289)
Q Consensus 206 ~~~~~~~~~~~~~--------~p---~gl~~~~d~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~ 274 (289)
.+|+..--..... .+ ..++. .++.+|+.+ ..+.|+.+|.++.+..............| +....+
T Consensus 374 ~tG~~~W~~~~~~~~~~~~~g~~~~~~~~~~--~g~~v~~g~-~dG~l~ald~~tG~~lW~~~~~~~~~a~P--~~~~~~ 448 (488)
T cd00216 374 KTGKVVWEKREGTIRDSWNIGFPHWGGSLAT--AGNLVFAGA-ADGYFRAFDATTGKELWKFRTPSGIQATP--MTYEVN 448 (488)
T ss_pred CCCcEeeEeeCCccccccccCCcccCcceEe--cCCeEEEEC-CCCeEEEEECCCCceeeEEECCCCceEcC--EEEEeC
Confidence 8886532211110 11 12232 456688886 46889999976543322211111111112 444567
Q ss_pred CCEEEEEeCcc
Q 022967 275 GSFWIAILQVF 285 (289)
Q Consensus 275 G~lwv~~~~g~ 285 (289)
|++||++..|+
T Consensus 449 g~~yv~~~~g~ 459 (488)
T cd00216 449 GKQYVGVMVGG 459 (488)
T ss_pred CEEEEEEEecC
Confidence 89999998765
No 105
>PRK01029 tolB translocation protein TolB; Provisional
Probab=97.41 E-value=0.096 Score=47.75 Aligned_cols=149 Identities=14% Similarity=0.096 Sum_probs=84.0
Q ss_pred EEccCCC---E-EEEecC--CeEEEEec-CCceEEeeeecCcCccCeEEcCCCc-EEEEeCC---CceEE--Ee-CC---
Q 022967 83 CVDRNGV---L-YTATRD--GWIKRLHK-NGTWENWKLIGGDTLLGITTTQENE-ILVCDAD---KGLLK--VT-EE--- 145 (289)
Q Consensus 83 ~~d~~g~---l-~v~~~~--g~i~~~~~-~g~~~~~~~~~~~p~~gl~~d~~g~-l~v~~~~---~~i~~--~~-~~--- 145 (289)
++.|||+ + |++..+ ..|+..+. .|+...+....+... ..++.+||+ |.++... ..++. ++ ..
T Consensus 191 ~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt~~~g~~~-~p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~~ 269 (428)
T PRK01029 191 TWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKILALQGNQL-MPTFSPRKKLLAFISDRYGNPDLFIQSFSLETGAI 269 (428)
T ss_pred eEccCCCceEEEEEEccCCCceEEEEECCCCCceEeecCCCCcc-ceEECCCCCEEEEEECCCCCcceeEEEeecccCCC
Confidence 7778874 2 355543 46888884 455555554445555 778999995 4444321 13444 34 22
Q ss_pred C-eEEEEeccCCccccCccceEEcCCCc-EEEeeCCCccCccccccccceecCCCEEEEEeCC--CCeEEEeeCCCCCcc
Q 022967 146 G-VTVLASHVNGSRINLADDLIAATDGS-IYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPS--LNETSILLDSLFFAN 221 (289)
Q Consensus 146 g-~~~~~~~~~~~~~~~~~~l~~~~dG~-lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~--~~~~~~~~~~~~~p~ 221 (289)
| .+.+.... ........+.|||+ |+++... .+...||+++.+ ++..+.+........
T Consensus 270 g~~~~lt~~~----~~~~~~p~wSPDG~~Laf~s~~---------------~g~~~ly~~~~~~~g~~~~~lt~~~~~~~ 330 (428)
T PRK01029 270 GKPRRLLNEA----FGTQGNPSFSPDGTRLVFVSNK---------------DGRPRIYIMQIDPEGQSPRLLTKKYRNSS 330 (428)
T ss_pred CcceEeecCC----CCCcCCeEECCCCCEEEEEECC---------------CCCceEEEEECcccccceEEeccCCCCcc
Confidence 3 33333211 11223568999996 6655321 012368887654 233444433323335
Q ss_pred eEEEecCCCEEEEEeCC--CCeEEEEEecCCC
Q 022967 222 GVALSKDEDYLVVCETF--KFRCLKYWLKGES 251 (289)
Q Consensus 222 gl~~~~d~~~l~v~~~~--~~~i~~~~~~~~~ 251 (289)
...|+|||++|+++... ...|+++|+++..
T Consensus 331 ~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~ 362 (428)
T PRK01029 331 CPAWSPDGKKIAFCSVIKGVRQICVYDLATGR 362 (428)
T ss_pred ceeECCCCCEEEEEEcCCCCcEEEEEECCCCC
Confidence 67899999988876542 3579999987653
No 106
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=97.41 E-value=0.03 Score=46.21 Aligned_cols=140 Identities=19% Similarity=0.161 Sum_probs=82.4
Q ss_pred CCCEEEEecCCeEEEEe-cCCceEEe-eeecC------cCccCeEEcCCCcEEEEeCCCceEEEe-CCC-eEEEEeccCC
Q 022967 87 NGVLYTATRDGWIKRLH-KNGTWENW-KLIGG------DTLLGITTTQENEILVCDADKGLLKVT-EEG-VTVLASHVNG 156 (289)
Q Consensus 87 ~g~l~v~~~~g~i~~~~-~~g~~~~~-~~~~~------~p~~gl~~d~~g~l~v~~~~~~i~~~~-~~g-~~~~~~~~~~ 156 (289)
++.+|+...+++++.++ .+|+...- ..... .+. ..+++ ++.+|++.....++.+| .+| ...-... ..
T Consensus 76 ~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~g~l~~~d~~tG~~~w~~~~-~~ 152 (238)
T PF13360_consen 76 GGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSS-SPAVD-GDRLYVGTSSGKLVALDPKTGKLLWKYPV-GE 152 (238)
T ss_dssp TTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--S-EEEEE-TTEEEEEETCSEEEEEETTTTEEEEEEES-ST
T ss_pred ccccccccceeeeEecccCCcceeeeecccccccccccccc-CceEe-cCEEEEEeccCcEEEEecCCCcEEEEeec-CC
Confidence 67899888888999999 78876533 12111 112 23343 45688887667799999 788 4222221 11
Q ss_pred ccc-------cCccceEEcCCCcEEEeeCCCccCccccccccceecCCCEEEEEeCCCCeEEEeeCCCCCcceEEEecCC
Q 022967 157 SRI-------NLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANGVALSKDE 229 (289)
Q Consensus 157 ~~~-------~~~~~l~~~~dG~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~p~gl~~~~d~ 229 (289)
... ....+-.+-.+|.+|++... +.++.+|..+++.. .........+ ....++
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~------------------g~~~~~d~~tg~~~-w~~~~~~~~~-~~~~~~ 212 (238)
T PF13360_consen 153 PRGSSPISSFSDINGSPVISDGRVYVSSGD------------------GRVVAVDLATGEKL-WSKPISGIYS-LPSVDG 212 (238)
T ss_dssp T-SS--EEEETTEEEEEECCTTEEEEECCT------------------SSEEEEETTTTEEE-EEECSS-ECE-CEECCC
T ss_pred CCCCcceeeecccccceEEECCEEEEEcCC------------------CeEEEEECCCCCEE-EEecCCCccC-CceeeC
Confidence 111 01112222235688888653 45777788888744 2222222232 145678
Q ss_pred CEEEEEeCCCCeEEEEEecCC
Q 022967 230 DYLVVCETFKFRCLKYWLKGE 250 (289)
Q Consensus 230 ~~l~v~~~~~~~i~~~~~~~~ 250 (289)
+.||+.+ ..+.|+.+|+.+.
T Consensus 213 ~~l~~~~-~~~~l~~~d~~tG 232 (238)
T PF13360_consen 213 GTLYVTS-SDGRLYALDLKTG 232 (238)
T ss_dssp TEEEEEE-TTTEEEEEETTTT
T ss_pred CEEEEEe-CCCEEEEEECCCC
Confidence 8899998 6799999998754
No 107
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=97.41 E-value=0.015 Score=52.22 Aligned_cols=145 Identities=11% Similarity=0.017 Sum_probs=76.0
Q ss_pred ceEEEccCCCEEEEecCCeEEEEecCCceEE--eeeecCcCccCeEEcCCCcEEEEeCCCceEEEeCCCeEEEEeccCCc
Q 022967 80 EDVCVDRNGVLYTATRDGWIKRLHKNGTWEN--WKLIGGDTLLGITTTQENEILVCDADKGLLKVTEEGVTVLASHVNGS 157 (289)
Q Consensus 80 ~~l~~d~~g~l~v~~~~g~i~~~~~~g~~~~--~~~~~~~p~~gl~~d~~g~l~v~~~~~~i~~~~~~g~~~~~~~~~~~ 157 (289)
.++.+.++|.+.+++.+|.|..|++.+.... .....+... +|..-.+|.|.-...++.|..+|.+ .+.+.+..-..
T Consensus 250 l~v~F~engdviTgDS~G~i~Iw~~~~~~~~k~~~aH~ggv~-~L~~lr~GtllSGgKDRki~~Wd~~-y~k~r~~elPe 327 (626)
T KOG2106|consen 250 LCVTFLENGDVITGDSGGNILIWSKGTNRISKQVHAHDGGVF-SLCMLRDGTLLSGGKDRKIILWDDN-YRKLRETELPE 327 (626)
T ss_pred EEEEEcCCCCEEeecCCceEEEEeCCCceEEeEeeecCCceE-EEEEecCccEeecCccceEEecccc-ccccccccCch
Confidence 4588888999999999999999986553211 112234444 5666678887664333446666522 11111111111
Q ss_pred cccCccceEEcCCCcEEEeeCCCccCccccccccceecCCCEEEEEeCCCCeEEEeeCCCCCcceEEEecCCCEEEEEeC
Q 022967 158 RINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANGVALSKDEDYLVVCET 237 (289)
Q Consensus 158 ~~~~~~~l~~~~dG~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~p~gl~~~~d~~~l~v~~~ 237 (289)
.+..++.++.... .|||++.. +.|+.=..+++....+......--|++.+|+.+ +|++..
T Consensus 328 ~~G~iRtv~e~~~-di~vGTtr------------------N~iL~Gt~~~~f~~~v~gh~delwgla~hps~~-q~~T~g 387 (626)
T KOG2106|consen 328 QFGPIRTVAEGKG-DILVGTTR------------------NFILQGTLENGFTLTVQGHGDELWGLATHPSKN-QLLTCG 387 (626)
T ss_pred hcCCeeEEecCCC-cEEEeecc------------------ceEEEeeecCCceEEEEecccceeeEEcCCChh-heeecc
Confidence 2234555555443 38988754 334444433332222222223445677777666 566644
Q ss_pred CCCeEEEEE
Q 022967 238 FKFRCLKYW 246 (289)
Q Consensus 238 ~~~~i~~~~ 246 (289)
....+..|+
T Consensus 388 qdk~v~lW~ 396 (626)
T KOG2106|consen 388 QDKHVRLWN 396 (626)
T ss_pred CcceEEEcc
Confidence 434444443
No 108
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=97.40 E-value=0.032 Score=47.11 Aligned_cols=139 Identities=14% Similarity=0.195 Sum_probs=85.0
Q ss_pred cCCcceEEEccCCCEE-EEecCCeEEEEe----cCCceEEeeee---cCcCccCeEEcCCCc-EEEEeCCCceEEEe-CC
Q 022967 76 LNGPEDVCVDRNGVLY-TATRDGWIKRLH----KNGTWENWKLI---GGDTLLGITTTQENE-ILVCDADKGLLKVT-EE 145 (289)
Q Consensus 76 ~~~p~~l~~d~~g~l~-v~~~~g~i~~~~----~~g~~~~~~~~---~~~p~~gl~~d~~g~-l~v~~~~~~i~~~~-~~ 145 (289)
+.++-..|+||+|-++ ++...+.|..+| ..|-++.+.-. ..+-. .|.|.+||+ +.+++...-++.+| -+
T Consensus 140 ~~~~pi~AfDp~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~-~l~FS~dGK~iLlsT~~s~~~~lDAf~ 218 (311)
T KOG1446|consen 140 LSGRPIAAFDPEGLIFALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWT-DLEFSPDGKSILLSTNASFIYLLDAFD 218 (311)
T ss_pred cCCCcceeECCCCcEEEEecCCCeEEEEEecccCCCCceeEccCCCCcccee-eeEEcCCCCEEEEEeCCCcEEEEEccC
Confidence 4456668999999998 445555787777 23445555432 12234 899999997 66666656688888 57
Q ss_pred C--eEEEEeccCCccccCccceEEcCCCcEEEeeCCCccCccccccccceecCCCEEEEEeCCCCeEEEeeCCC-CCc-c
Q 022967 146 G--VTVLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSL-FFA-N 221 (289)
Q Consensus 146 g--~~~~~~~~~~~~~~~~~~l~~~~dG~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~-~~p-~ 221 (289)
| ...+.... ...+.+-+..+.|||...++... .|+|..++.+++.......+. ..| .
T Consensus 219 G~~~~tfs~~~--~~~~~~~~a~ftPds~Fvl~gs~-----------------dg~i~vw~~~tg~~v~~~~~~~~~~~~ 279 (311)
T KOG1446|consen 219 GTVKSTFSGYP--NAGNLPLSATFTPDSKFVLSGSD-----------------DGTIHVWNLETGKKVAVLRGPNGGPVS 279 (311)
T ss_pred CcEeeeEeecc--CCCCcceeEEECCCCcEEEEecC-----------------CCcEEEEEcCCCcEeeEecCCCCCCcc
Confidence 7 34333221 12234567789999988777543 478888888776654433331 222 2
Q ss_pred eEEEecCCCEEEEE
Q 022967 222 GVALSKDEDYLVVC 235 (289)
Q Consensus 222 gl~~~~d~~~l~v~ 235 (289)
-+.|.|.-- ++++
T Consensus 280 ~~~fnP~~~-mf~s 292 (311)
T KOG1446|consen 280 CVRFNPRYA-MFVS 292 (311)
T ss_pred ccccCCcee-eeee
Confidence 345666443 4444
No 109
>smart00135 LY Low-density lipoprotein-receptor YWTD domain. Type "B" repeats in low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. Also present in a variety of molecules similar to gp300/megalin.
Probab=97.40 E-value=0.00078 Score=39.61 Aligned_cols=38 Identities=24% Similarity=0.005 Sum_probs=33.6
Q ss_pred eeCCCCCcceEEEecCCCEEEEEeCCCCeEEEEEecCC
Q 022967 213 LLDSLFFANGVALSKDEDYLVVCETFKFRCLKYWLKGE 250 (289)
Q Consensus 213 ~~~~~~~p~gl~~~~d~~~l~v~~~~~~~i~~~~~~~~ 250 (289)
+..++..|+|+++++.++.||++|...+.|.+.+++|.
T Consensus 4 ~~~~~~~~~~la~d~~~~~lYw~D~~~~~I~~~~~~g~ 41 (43)
T smart00135 4 LSEGLGHPNGLAVDWIEGRLYWTDWGLDVIEVANLDGT 41 (43)
T ss_pred EECCCCCcCEEEEeecCCEEEEEeCCCCEEEEEeCCCC
Confidence 34577889999999999999999999999999998764
No 110
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=97.38 E-value=0.025 Score=48.45 Aligned_cols=154 Identities=14% Similarity=0.053 Sum_probs=85.9
Q ss_pred CcCccCeEEcCCCcEEE--EeC-CCceEEEe-CCC-eEEEEeccCCccccCccceEEcCCCc-EEEeeCCCccCcccccc
Q 022967 116 GDTLLGITTTQENEILV--CDA-DKGLLKVT-EEG-VTVLASHVNGSRINLADDLIAATDGS-IYFSVASTKFGLHNWGL 189 (289)
Q Consensus 116 ~~p~~gl~~d~~g~l~v--~~~-~~~i~~~~-~~g-~~~~~~~~~~~~~~~~~~l~~~~dG~-lyv~~~~~~~~~~~~~~ 189 (289)
.+.+ +++.++.....| +-. +.-.+.+| .+| ....... + ...++.-.-++++||+ ||.+...
T Consensus 5 ~RgH-~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a-~-~gRHFyGHg~fs~dG~~LytTEnd---------- 71 (305)
T PF07433_consen 5 ARGH-GVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWA-P-PGRHFYGHGVFSPDGRLLYTTEND---------- 71 (305)
T ss_pred cccc-ceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcC-C-CCCEEecCEEEcCCCCEEEEeccc----------
Confidence 4567 899988543333 322 23478888 667 3322222 2 2223444568999997 5555432
Q ss_pred ccceecCCCEEEEEeCCCC--eEEEeeCCCCCcceEEEecCCCEEEEEeCCCCeE-----EEEEec------------CC
Q 022967 190 DLLEAKPHGKLLKYDPSLN--ETSILLDSLFFANGVALSKDEDYLVVCETFKFRC-----LKYWLK------------GE 250 (289)
Q Consensus 190 ~~~~~~~~g~i~~~~~~~~--~~~~~~~~~~~p~gl~~~~d~~~l~v~~~~~~~i-----~~~~~~------------~~ 250 (289)
.....|.|-.||...+ ++..+....-.|..+.+.|||+.|.|++-+-.+- .+++++ +.
T Consensus 72 ---~~~g~G~IgVyd~~~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG 148 (305)
T PF07433_consen 72 ---YETGRGVIGVYDAARGYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSG 148 (305)
T ss_pred ---cCCCcEEEEEEECcCCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCC
Confidence 1234578888888722 2333455667799999999999999997542111 122222 11
Q ss_pred CCcceeeeeccCC-CCCCceeeCCCCCEEEEEeCcc
Q 022967 251 SKEQTEIFVENLP-GGPDNIKLAPDGSFWIAILQVF 285 (289)
Q Consensus 251 ~~~~~~~~~~~~~-~~p~~i~~d~~G~lwv~~~~g~ 285 (289)
++.....+...+. ...+-|+++.+|.+|++...-|
T Consensus 149 ~ll~q~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~qg 184 (305)
T PF07433_consen 149 ALLEQVELPPDLHQLSIRHLAVDGDGTVAFAMQYQG 184 (305)
T ss_pred ceeeeeecCccccccceeeEEecCCCcEEEEEecCC
Confidence 1111101100110 1244589999999999986544
No 111
>PTZ00420 coronin; Provisional
Probab=97.38 E-value=0.13 Score=48.41 Aligned_cols=149 Identities=13% Similarity=0.021 Sum_probs=85.2
Q ss_pred CCcceEEEccC-CCEE-EEecCCeEEEEe-cCCc--eE-------EeeeecCcCccCeEEcCCCcE-EEE-eCCCceEEE
Q 022967 77 NGPEDVCVDRN-GVLY-TATRDGWIKRLH-KNGT--WE-------NWKLIGGDTLLGITTTQENEI-LVC-DADKGLLKV 142 (289)
Q Consensus 77 ~~p~~l~~d~~-g~l~-v~~~~g~i~~~~-~~g~--~~-------~~~~~~~~p~~gl~~d~~g~l-~v~-~~~~~i~~~ 142 (289)
....++++.++ +++. .+..++.|..|+ .++. .. .+........ .++|++++.. +++ ..+..|..+
T Consensus 75 ~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~-sVaf~P~g~~iLaSgS~DgtIrIW 153 (568)
T PTZ00420 75 SSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKIS-IIDWNPMNYYIMCSSGFDSFVNIW 153 (568)
T ss_pred CCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEE-EEEECCCCCeEEEEEeCCCeEEEE
Confidence 34567888884 5555 667889999998 3331 11 1111223344 8999988764 333 333456666
Q ss_pred e-CCC--eEEEEeccCCccccCccceEEcCCCcEEEeeCCCccCccccccccceecCCCEEEEEeCCCCeEEEeeCCCCC
Q 022967 143 T-EEG--VTVLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFF 219 (289)
Q Consensus 143 ~-~~g--~~~~~~~~~~~~~~~~~~l~~~~dG~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~ 219 (289)
| ..+ ...+. .. ..+..+.++++|.+.++... .+.|..+|+.+++......+...
T Consensus 154 Dl~tg~~~~~i~--~~----~~V~SlswspdG~lLat~s~-----------------D~~IrIwD~Rsg~~i~tl~gH~g 210 (568)
T PTZ00420 154 DIENEKRAFQIN--MP----KKLSSLKWNIKGNLLSGTCV-----------------GKHMHIIDPRKQEIASSFHIHDG 210 (568)
T ss_pred ECCCCcEEEEEe--cC----CcEEEEEECCCCCEEEEEec-----------------CCEEEEEECCCCcEEEEEecccC
Confidence 7 555 22221 11 24678999999998776432 35688889887654432222111
Q ss_pred c-ceE-----EEecCCCEEEEEeCCC---CeEEEEEecC
Q 022967 220 A-NGV-----ALSKDEDYLVVCETFK---FRCLKYWLKG 249 (289)
Q Consensus 220 p-~gl-----~~~~d~~~l~v~~~~~---~~i~~~~~~~ 249 (289)
. ... .++++++++..+.... +.|..||+..
T Consensus 211 ~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~ 249 (568)
T PTZ00420 211 GKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKN 249 (568)
T ss_pred CceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCC
Confidence 1 111 2347777555544332 4688898763
No 112
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=97.37 E-value=0.018 Score=55.09 Aligned_cols=139 Identities=14% Similarity=0.100 Sum_probs=87.0
Q ss_pred CEEEEecCCeEEEEe-cCCceEEeeeecCcCccCeEEcCCCcEEEEeCC-CceEEEe-CCC--eEEEEeccCCccccCcc
Q 022967 89 VLYTATRDGWIKRLH-KNGTWENWKLIGGDTLLGITTTQENEILVCDAD-KGLLKVT-EEG--VTVLASHVNGSRINLAD 163 (289)
Q Consensus 89 ~l~v~~~~g~i~~~~-~~g~~~~~~~~~~~p~~gl~~d~~g~l~v~~~~-~~i~~~~-~~g--~~~~~~~~~~~~~~~~~ 163 (289)
.+.+++.++.|.++. +++....+..-...|...++++.+|+..++... ..|-.++ .++ ...+.. ..+ ...
T Consensus 68 ~f~~~s~~~tv~~y~fps~~~~~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrg-h~a----pVl 142 (933)
T KOG1274|consen 68 HFLTGSEQNTVLRYKFPSGEEDTILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRG-HDA----PVL 142 (933)
T ss_pred ceEEeeccceEEEeeCCCCCccceeeeeeccceEEEEecCCcEEEeecCceeEEEEeccccchheeecc-cCC----cee
Confidence 555677788888887 555544343333445547888888877666443 4455555 444 333322 121 345
Q ss_pred ceEEcCCCcEEEeeCCCccCccccccccceecCCCEEEEEeCCCCeEEEeeCCC---------CCcceEEEecCCCEEEE
Q 022967 164 DLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSL---------FFANGVALSKDEDYLVV 234 (289)
Q Consensus 164 ~l~~~~dG~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~---------~~p~gl~~~~d~~~l~v 234 (289)
.+..+|+|++..+.+ .+|.|..++.+.+.......++ .-..-++|+|+++.+.+
T Consensus 143 ~l~~~p~~~fLAvss-----------------~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~ 205 (933)
T KOG1274|consen 143 QLSYDPKGNFLAVSS-----------------CDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAV 205 (933)
T ss_pred eeeEcCCCCEEEEEe-----------------cCceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEe
Confidence 889999998766543 3588888888766554433322 12245689999877776
Q ss_pred EeCCCCeEEEEEecCC
Q 022967 235 CETFKFRCLKYWLKGE 250 (289)
Q Consensus 235 ~~~~~~~i~~~~~~~~ 250 (289)
.-. .+.|..|+.++-
T Consensus 206 ~~~-d~~Vkvy~r~~w 220 (933)
T KOG1274|consen 206 PPV-DNTVKVYSRKGW 220 (933)
T ss_pred ecc-CCeEEEEccCCc
Confidence 644 588999987764
No 113
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=97.36 E-value=0.023 Score=48.13 Aligned_cols=177 Identities=16% Similarity=0.101 Sum_probs=94.7
Q ss_pred ceEEEccCCCEE-EEecCCeEEEEec--CCceEEeeeecCcCccCeEEcCCC---cEEEEeCCCceEEEeCCCeEEEEec
Q 022967 80 EDVCVDRNGVLY-TATRDGWIKRLHK--NGTWENWKLIGGDTLLGITTTQEN---EILVCDADKGLLKVTEEGVTVLASH 153 (289)
Q Consensus 80 ~~l~~d~~g~l~-v~~~~g~i~~~~~--~g~~~~~~~~~~~p~~gl~~d~~g---~l~v~~~~~~i~~~~~~g~~~~~~~ 153 (289)
.++|++ |... .+..+.+|..||. .-+...+....+... .+.|+..- .|.-+..++.|..++.+.++.+..
T Consensus 47 tavAVs--~~~~aSGssDetI~IYDm~k~~qlg~ll~Hagsit-aL~F~~~~S~shLlS~sdDG~i~iw~~~~W~~~~s- 122 (362)
T KOG0294|consen 47 TALAVS--GPYVASGSSDETIHIYDMRKRKQLGILLSHAGSIT-ALKFYPPLSKSHLLSGSDDGHIIIWRVGSWELLKS- 122 (362)
T ss_pred eEEEec--ceeEeccCCCCcEEEEeccchhhhcceeccccceE-EEEecCCcchhheeeecCCCcEEEEEcCCeEEeee-
Confidence 346664 3333 3447889999992 223333333334444 66665432 444444333344444222322211
Q ss_pred cCCccccCccceEEcCCCcEEEeeCCCccCccccccccceecCCCEEEEEeCCCCeEEEeeCCCCCcceEEEecCCCEEE
Q 022967 154 VNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANGVALSKDEDYLV 233 (289)
Q Consensus 154 ~~~~~~~~~~~l~~~~dG~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~p~gl~~~~d~~~l~ 233 (289)
..... ...++|++.|.|+|-++.+. .+.+-.+|.-.|+...+..--..+.-+.|+|.|++++
T Consensus 123 lK~H~-~~Vt~lsiHPS~KLALsVg~-----------------D~~lr~WNLV~Gr~a~v~~L~~~at~v~w~~~Gd~F~ 184 (362)
T KOG0294|consen 123 LKAHK-GQVTDLSIHPSGKLALSVGG-----------------DQVLRTWNLVRGRVAFVLNLKNKATLVSWSPQGDHFV 184 (362)
T ss_pred ecccc-cccceeEecCCCceEEEEcC-----------------CceeeeehhhcCccceeeccCCcceeeEEcCCCCEEE
Confidence 11111 24889999999999988754 2233334433344333333334455689999999888
Q ss_pred EEeCCCCeEEEEEecCCCCcceeeeeccCCCCCCceeeCCCCCEEEEEeCc
Q 022967 234 VCETFKFRCLKYWLKGESKEQTEIFVENLPGGPDNIKLAPDGSFWIAILQV 284 (289)
Q Consensus 234 v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~lwv~~~~g 284 (289)
+. .+++|-+|.++..++.. ++.+ +..+.++..+.++.+.||....
T Consensus 185 v~--~~~~i~i~q~d~A~v~~---~i~~-~~r~l~~~~l~~~~L~vG~d~~ 229 (362)
T KOG0294|consen 185 VS--GRNKIDIYQLDNASVFR---EIEN-PKRILCATFLDGSELLVGGDNE 229 (362)
T ss_pred EE--eccEEEEEecccHhHhh---hhhc-cccceeeeecCCceEEEecCCc
Confidence 87 55788888776533221 1111 1235556666666777766544
No 114
>TIGR03032 conserved hypothetical protein TIGR03032. This protein family is uncharacterized. A number of motifs are conserved perfectly among all member sequences. The function of this protein is unknown.
Probab=97.33 E-value=0.0054 Score=52.24 Aligned_cols=136 Identities=16% Similarity=0.173 Sum_probs=79.7
Q ss_pred cceEEEccCCCEE-EEecCCeEEEEecCCceEEeee--------ecC--cCccCeEEcCCCc-EEEEeCC----CceEEE
Q 022967 79 PEDVCVDRNGVLY-TATRDGWIKRLHKNGTWENWKL--------IGG--DTLLGITTTQENE-ILVCDAD----KGLLKV 142 (289)
Q Consensus 79 p~~l~~d~~g~l~-v~~~~g~i~~~~~~g~~~~~~~--------~~~--~p~~gl~~d~~g~-l~v~~~~----~~i~~~ 142 (289)
-..|++ .++.+| |.+.-.-+..++++-++...-+ ... +-+ |||++ +|+ -||+.-+ .+-||-
T Consensus 105 iHdia~-~~~~l~fVNT~fSCLatl~~~~SF~P~WkPpFIs~la~eDRCHLN-GlA~~-~g~p~yVTa~~~sD~~~gWR~ 181 (335)
T TIGR03032 105 AHDLAL-GAGRLLFVNTLFSCLATVSPDYSFVPLWKPPFISKLAPEDRCHLN-GMALD-DGEPRYVTALSQSDVADGWRE 181 (335)
T ss_pred hhheee-cCCcEEEEECcceeEEEECCCCccccccCCccccccCccCceeec-ceeee-CCeEEEEEEeeccCCcccccc
Confidence 344666 456777 5555555666765554332211 112 345 99996 554 6766322 134554
Q ss_pred e-CCC--eEEEEe-ccCCccccCccceEEcCCCcEEEeeCCCccCccccccccceecCCCEEEEEeCCCCeEEEeeCCCC
Q 022967 143 T-EEG--VTVLAS-HVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLF 218 (289)
Q Consensus 143 ~-~~g--~~~~~~-~~~~~~~~~~~~l~~~~dG~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~ 218 (289)
+ .+| +--+.. ..--..+..|.+-.+ -+|+||+.|.. .|.+.++|+++|+.+.++.-..
T Consensus 182 ~~~~gG~vidv~s~evl~~GLsmPhSPRW-hdgrLwvldsg-----------------tGev~~vD~~~G~~e~Va~vpG 243 (335)
T TIGR03032 182 GRRDGGCVIDIPSGEVVASGLSMPHSPRW-YQGKLWLLNSG-----------------RGELGYVDPQAGKFQPVAFLPG 243 (335)
T ss_pred cccCCeEEEEeCCCCEEEcCccCCcCCcE-eCCeEEEEECC-----------------CCEEEEEcCCCCcEEEEEECCC
Confidence 4 333 211111 000011223333222 27899999975 5899999999899998887777
Q ss_pred CcceEEEecCCCEEEEEeC
Q 022967 219 FANGVALSKDEDYLVVCET 237 (289)
Q Consensus 219 ~p~gl~~~~d~~~l~v~~~ 237 (289)
+|.|++|. |+.++|+-+
T Consensus 244 ~~rGL~f~--G~llvVgmS 260 (335)
T TIGR03032 244 FTRGLAFA--GDFAFVGLS 260 (335)
T ss_pred CCccccee--CCEEEEEec
Confidence 89999998 887777654
No 115
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=97.32 E-value=0.019 Score=50.34 Aligned_cols=111 Identities=17% Similarity=0.176 Sum_probs=61.7
Q ss_pred CccceEEcCCCcEEEeeCCCccCccccccccceecCCCEEEEEeCCCCeEEEe--eCC-------------CCCcceEEE
Q 022967 161 LADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSIL--LDS-------------LFFANGVAL 225 (289)
Q Consensus 161 ~~~~l~~~~dG~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~--~~~-------------~~~p~gl~~ 225 (289)
-+.+|++.++|.+||++.... .......|++++.++.....+ ... -...-+|++
T Consensus 86 D~Egi~~~~~g~~~is~E~~~-----------~~~~~p~I~~~~~~G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~ 154 (326)
T PF13449_consen 86 DPEGIAVPPDGSFWISSEGGR-----------TGGIPPRIRRFDLDGRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAV 154 (326)
T ss_pred ChhHeEEecCCCEEEEeCCcc-----------CCCCCCEEEEECCCCcccceEccccccccccCccccccCCCCeEEEEE
Confidence 345899988999999986410 000125799999873322222 111 122347899
Q ss_pred ecCCCEEEEEeCCC---------------CeEEEEEecCCC--Ccceeeeecc-----CCCCCCceeeCCCCCEEEEEe
Q 022967 226 SKDEDYLVVCETFK---------------FRCLKYWLKGES--KEQTEIFVEN-----LPGGPDNIKLAPDGSFWIAIL 282 (289)
Q Consensus 226 ~~d~~~l~v~~~~~---------------~~i~~~~~~~~~--~~~~~~~~~~-----~~~~p~~i~~d~~G~lwv~~~ 282 (289)
++||+.||++.-.. .+|++||..... ........+. ....+..+....+|.++|=-.
T Consensus 155 ~~dG~~l~~~~E~~l~~d~~~~~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvLER 233 (326)
T PF13449_consen 155 SPDGRTLFAAMESPLKQDGPRANPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVLER 233 (326)
T ss_pred CCCCCEEEEEECccccCCCcccccccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEEEc
Confidence 99999888765322 467778765421 2222211221 112344455566677777543
No 116
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=97.30 E-value=0.038 Score=46.92 Aligned_cols=184 Identities=11% Similarity=0.019 Sum_probs=98.2
Q ss_pred cceEEEccCCCEE-EEecCCeEEEEec-CCceEEeeeecCcCccCeEEcCCCcEEEEeC-CCceEEEe-CCC--eEEEEe
Q 022967 79 PEDVCVDRNGVLY-TATRDGWIKRLHK-NGTWENWKLIGGDTLLGITTTQENEILVCDA-DKGLLKVT-EEG--VTVLAS 152 (289)
Q Consensus 79 p~~l~~d~~g~l~-v~~~~g~i~~~~~-~g~~~~~~~~~~~p~~gl~~d~~g~l~v~~~-~~~i~~~~-~~g--~~~~~~ 152 (289)
.+++.+.+.|.+. +|+.+|+|..||- +-.........-+|.+.+.+.++|+.+++.. +..+..+| .+| ...+.-
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~rirf 105 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRIRF 105 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEccccchhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCceeEEEc
Confidence 7888999988766 8999999999993 2222222233345666999999998777654 35677777 566 444322
Q ss_pred ccCCccccCccceEEcC-CCcEEEeeCCCccCccccccccceecCCCEEEEEeCCCCeEEEeeC-----CCCCcceEEEe
Q 022967 153 HVNGSRINLADDLIAAT-DGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLD-----SLFFANGVALS 226 (289)
Q Consensus 153 ~~~~~~~~~~~~l~~~~-dG~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~-----~~~~p~gl~~~ 226 (289)
..+ ..+..+.| +.+..+.... +....+..++. ..-..+.. ....+.-..++
T Consensus 106 ~sp------v~~~q~hp~k~n~~va~~~---------------~~sp~vi~~s~--~~h~~Lp~d~d~dln~sas~~~fd 162 (405)
T KOG1273|consen 106 DSP------VWGAQWHPRKRNKCVATIM---------------EESPVVIDFSD--PKHSVLPKDDDGDLNSSASHGVFD 162 (405)
T ss_pred cCc------cceeeeccccCCeEEEEEe---------------cCCcEEEEecC--CceeeccCCCcccccccccccccc
Confidence 111 12333333 2333333211 01123333332 11111110 01122223688
Q ss_pred cCCCEEEEEeCCCCeEEEEEecCCCCcceeeeeccCCCCCCceeeCCCCCEEEEEeCccccC
Q 022967 227 KDEDYLVVCETFKFRCLKYWLKGESKEQTEIFVENLPGGPDNIKLAPDGSFWIAILQVFISN 288 (289)
Q Consensus 227 ~d~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~lwv~~~~g~i~~ 288 (289)
+.|+++|.. +..+++..|+..+-+. ...+--..-.....|.+...|..++-..+.++.+
T Consensus 163 r~g~yIitG-tsKGkllv~~a~t~e~--vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR 221 (405)
T KOG1273|consen 163 RRGKYIITG-TSKGKLLVYDAETLEC--VASFRITSVQAIKQIIVSRKGRFLIINTSDRVIR 221 (405)
T ss_pred CCCCEEEEe-cCcceEEEEecchhee--eeeeeechheeeeEEEEeccCcEEEEecCCceEE
Confidence 899977777 4558899998664321 1111000001234466777777666665555554
No 117
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=97.28 E-value=0.023 Score=53.36 Aligned_cols=177 Identities=10% Similarity=0.028 Sum_probs=98.3
Q ss_pred eEEEccCCCEEEEe-cCCeEEEEecCC-ceEEeeeecCcCccCeEEcCCCcEEEEeCCCc---eEEEeCCC-eEEEEecc
Q 022967 81 DVCVDRNGVLYTAT-RDGWIKRLHKNG-TWENWKLIGGDTLLGITTTQENEILVCDADKG---LLKVTEEG-VTVLASHV 154 (289)
Q Consensus 81 ~l~~d~~g~l~v~~-~~g~i~~~~~~g-~~~~~~~~~~~p~~gl~~d~~g~l~v~~~~~~---i~~~~~~g-~~~~~~~~ 154 (289)
+..+.|+.++.+++ .+..+..|..+- ...+...+...|...+.|.+-|..+++....+ +|..|... .++++...
T Consensus 456 g~sFsPd~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d~~~PlRifaghl 535 (707)
T KOG0263|consen 456 GCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRGYYFATASHDQTARLWSTDHNKPLRIFAGHL 535 (707)
T ss_pred eeeecccccceeeccCCcceeeeecccceeEEEecCCCcceeeEEecCCceEEEecCCCceeeeeecccCCchhhhcccc
Confidence 35667777777665 456666666322 22223334456665788888875544433333 44444434 55554432
Q ss_pred CCccccCccceEEcCCCcEEEeeCCCccCccccccccceecCCCEEEEEeCCCCe-EEEeeCCCCCcceEEEecCCCEEE
Q 022967 155 NGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNE-TSILLDSLFFANGVALSKDEDYLV 233 (289)
Q Consensus 155 ~~~~~~~~~~l~~~~dG~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~-~~~~~~~~~~p~gl~~~~d~~~l~ 233 (289)
.-...+.+.|+.+...+ ++. .-.+-.+|..+|. ++++...-..-..++++|+|++|-
T Consensus 536 -----sDV~cv~FHPNs~Y~aT-GSs----------------D~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr~La 593 (707)
T KOG0263|consen 536 -----SDVDCVSFHPNSNYVAT-GSS----------------DRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGRYLA 593 (707)
T ss_pred -----cccceEEECCccccccc-CCC----------------CceEEEEEcCCCcEEEEecCCCCceEEEEEcCCCceEe
Confidence 23456788898764444 331 1223334444444 444433333346789999998655
Q ss_pred EEeCCCCeEEEEEecCCCCcceeeeeccCCCCCCceeeCCCCCEEEEEeC
Q 022967 234 VCETFKFRCLKYWLKGESKEQTEIFVENLPGGPDNIKLAPDGSFWIAILQ 283 (289)
Q Consensus 234 v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~lwv~~~~ 283 (289)
-+ ...+.|..||+.+.++-. .+... .+....|.+..+|++.++...
T Consensus 594 Sg-~ed~~I~iWDl~~~~~v~--~l~~H-t~ti~SlsFS~dg~vLasgg~ 639 (707)
T KOG0263|consen 594 SG-DEDGLIKIWDLANGSLVK--QLKGH-TGTIYSLSFSRDGNVLASGGA 639 (707)
T ss_pred ec-ccCCcEEEEEcCCCcchh--hhhcc-cCceeEEEEecCCCEEEecCC
Confidence 44 445788889987643311 12211 244556778888888887643
No 118
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=97.28 E-value=0.066 Score=43.02 Aligned_cols=40 Identities=18% Similarity=0.331 Sum_probs=30.4
Q ss_pred CEEEEEeCCCCeEEEeeC-------------CCCCcceEEEecCCCEEEEEeC
Q 022967 198 GKLLKYDPSLNETSILLD-------------SLFFANGVALSKDEDYLVVCET 237 (289)
Q Consensus 198 g~i~~~~~~~~~~~~~~~-------------~~~~p~gl~~~~d~~~l~v~~~ 237 (289)
.+|.|++|++|++....+ ...-+||+|+.++++++|++.-
T Consensus 196 ~~I~rI~p~sGrV~~widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTGK 248 (262)
T COG3823 196 TRIARIDPDSGRVVAWIDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLITGK 248 (262)
T ss_pred cceEEEcCCCCcEEEEEEccCCchhcCccccccccccceeecCcCCeEEEecC
Confidence 478999999998764421 2345799999999988999843
No 119
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=97.28 E-value=0.01 Score=48.66 Aligned_cols=89 Identities=15% Similarity=0.106 Sum_probs=54.9
Q ss_pred CceEEEe-CCC--eEEEEeccCCccccCccceEEcCCCcEEEeeCCCccCccccccccceecCCCEEEEEeCCCCeEEEe
Q 022967 137 KGLLKVT-EEG--VTVLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSIL 213 (289)
Q Consensus 137 ~~i~~~~-~~g--~~~~~~~~~~~~~~~~~~l~~~~dG~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~ 213 (289)
..+..+| ..| +..+... ..+..+.+.+||++...... +.|...|++.-....-
T Consensus 165 ~tVRLWD~rTgt~v~sL~~~------s~VtSlEvs~dG~ilTia~g------------------ssV~Fwdaksf~~lKs 220 (334)
T KOG0278|consen 165 KTVRLWDHRTGTEVQSLEFN------SPVTSLEVSQDGRILTIAYG------------------SSVKFWDAKSFGLLKS 220 (334)
T ss_pred CceEEEEeccCcEEEEEecC------CCCcceeeccCCCEEEEecC------------------ceeEEeccccccceee
Confidence 4566666 566 3333221 35678999999987665432 4577777763222111
Q ss_pred eCCCCCcceEEEecCCCEEEEEeCCCCeEEEEEecCC
Q 022967 214 LDSLFFANGVALSKDEDYLVVCETFKFRCLKYWLKGE 250 (289)
Q Consensus 214 ~~~~~~p~gl~~~~d~~~l~v~~~~~~~i~~~~~~~~ 250 (289)
.+-..+...-.++|+.+ +||+-.....+++||.+..
T Consensus 221 ~k~P~nV~SASL~P~k~-~fVaGged~~~~kfDy~Tg 256 (334)
T KOG0278|consen 221 YKMPCNVESASLHPKKE-FFVAGGEDFKVYKFDYNTG 256 (334)
T ss_pred ccCccccccccccCCCc-eEEecCcceEEEEEeccCC
Confidence 12223344556788775 8999777789999998753
No 120
>PTZ00421 coronin; Provisional
Probab=97.22 E-value=0.086 Score=48.90 Aligned_cols=155 Identities=12% Similarity=0.090 Sum_probs=86.4
Q ss_pred cceEEEccCC-CE-EEEecCCeEEEEe-cCCceEE-eeeecCcCccCeEEcCCCcEEEEeCC-CceEEEe-CCC--eEEE
Q 022967 79 PEDVCVDRNG-VL-YTATRDGWIKRLH-KNGTWEN-WKLIGGDTLLGITTTQENEILVCDAD-KGLLKVT-EEG--VTVL 150 (289)
Q Consensus 79 p~~l~~d~~g-~l-~v~~~~g~i~~~~-~~g~~~~-~~~~~~~p~~gl~~d~~g~l~v~~~~-~~i~~~~-~~g--~~~~ 150 (289)
..++++.+++ ++ ..+..++.|..|| .+++... +........ ++++.++|.++++... ..|..+| .++ +..+
T Consensus 128 V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l~~h~~~V~-sla~spdG~lLatgs~Dg~IrIwD~rsg~~v~tl 206 (493)
T PTZ00421 128 VGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIKCHSDQIT-SLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVSSV 206 (493)
T ss_pred EEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEEcCCCCceE-EEEEECCCCEEEEecCCCEEEEEECCCCcEEEEE
Confidence 4568888854 44 4667889999999 4454332 222223345 8999999987776544 4466667 555 3322
Q ss_pred EeccCCccccCccceEEcCCCcEEEeeCCCccCccccccccceecCCCEEEEEeCCCCe--EEEee-CCCCCcceEEEec
Q 022967 151 ASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNE--TSILL-DSLFFANGVALSK 227 (289)
Q Consensus 151 ~~~~~~~~~~~~~~l~~~~dG~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~--~~~~~-~~~~~p~gl~~~~ 227 (289)
... .+ .....+.+.+++...++.+.. ....+.|..+|..... ..... +......-..+++
T Consensus 207 ~~H-~~---~~~~~~~w~~~~~~ivt~G~s-------------~s~Dr~VklWDlr~~~~p~~~~~~d~~~~~~~~~~d~ 269 (493)
T PTZ00421 207 EAH-AS---AKSQRCLWAKRKDLIITLGCS-------------KSQQRQIMLWDTRKMASPYSTVDLDQSSALFIPFFDE 269 (493)
T ss_pred ecC-CC---CcceEEEEcCCCCeEEEEecC-------------CCCCCeEEEEeCCCCCCceeEeccCCCCceEEEEEcC
Confidence 111 11 112244566666655554321 0113457777765322 11111 1111112235789
Q ss_pred CCCEEEEEeCCCCeEEEEEecCCC
Q 022967 228 DEDYLVVCETFKFRCLKYWLKGES 251 (289)
Q Consensus 228 d~~~l~v~~~~~~~i~~~~~~~~~ 251 (289)
|++.||++..+.+.|..|++....
T Consensus 270 d~~~L~lggkgDg~Iriwdl~~~~ 293 (493)
T PTZ00421 270 DTNLLYIGSKGEGNIRCFELMNER 293 (493)
T ss_pred CCCEEEEEEeCCCeEEEEEeeCCc
Confidence 999888886667889999987543
No 121
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=97.21 E-value=0.01 Score=52.50 Aligned_cols=185 Identities=16% Similarity=0.170 Sum_probs=104.6
Q ss_pred CcceEEEccCCCEE-EEecCCeEEEEe-cCCceEEeeeecCcCccCeEEcCCCc-EEEEeCCCceEEEe-CC-C-eEEEE
Q 022967 78 GPEDVCVDRNGVLY-TATRDGWIKRLH-KNGTWENWKLIGGDTLLGITTTQENE-ILVCDADKGLLKVT-EE-G-VTVLA 151 (289)
Q Consensus 78 ~p~~l~~d~~g~l~-v~~~~g~i~~~~-~~g~~~~~~~~~~~p~~gl~~d~~g~-l~v~~~~~~i~~~~-~~-g-~~~~~ 151 (289)
.-+...+.+++++. +...+|.|+.+. .++.+...-+..+... ++.|+.+|+ ||++.....||.+| .. . ...+.
T Consensus 305 ~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~KieG~v~-~~~fsSdsk~l~~~~~~GeV~v~nl~~~~~~~rf~ 383 (514)
T KOG2055|consen 305 SMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFKIEGVVS-DFTFSSDSKELLASGGTGEVYVWNLRQNSCLHRFV 383 (514)
T ss_pred hhheeEecCCCCeEEEcccCceEEeehhhhhhhhheeeeccEEe-eEEEecCCcEEEEEcCCceEEEEecCCcceEEEEe
Confidence 34556777777654 444678888887 4554433333445556 888988885 66665556688888 33 3 55554
Q ss_pred eccCCccccCccceEEcCCCcEEEeeCCCccCccccccccceecCCCEEEEEeCCCCe----EEEe--eCCC-CCcceEE
Q 022967 152 SHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNE----TSIL--LDSL-FFANGVA 224 (289)
Q Consensus 152 ~~~~~~~~~~~~~l~~~~dG~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~----~~~~--~~~~-~~p~gl~ 224 (289)
+.- . .+...++...+|. |++.++ ..|-|-.||.++.. .+.+ .+.+ ...+.|.
T Consensus 384 D~G---~-v~gts~~~S~ng~-ylA~GS----------------~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~Itsl~ 442 (514)
T KOG2055|consen 384 DDG---S-VHGTSLCISLNGS-YLATGS----------------DSGIVNIYDGNSCFASTNPKPIKTVDNLTTAITSLQ 442 (514)
T ss_pred ecC---c-cceeeeeecCCCc-eEEecc----------------CcceEEEeccchhhccCCCCchhhhhhhheeeeeee
Confidence 421 1 2344778888888 666655 24656667644211 1111 1122 2346789
Q ss_pred EecCCCEEEEEeCCC-CeEEEEEecCCCCcceeeeec-cC-CCCCCceeeCCC-CCEEEEEeCccc
Q 022967 225 LSKDEDYLVVCETFK-FRCLKYWLKGESKEQTEIFVE-NL-PGGPDNIKLAPD-GSFWIAILQVFI 286 (289)
Q Consensus 225 ~~~d~~~l~v~~~~~-~~i~~~~~~~~~~~~~~~~~~-~~-~~~p~~i~~d~~-G~lwv~~~~g~i 286 (289)
|++|...|-++.+.. +.+....+..-+ ....|.. +. -+++.++++.+. |.+-||.-.|++
T Consensus 443 Fn~d~qiLAiaS~~~knalrLVHvPS~T--VFsNfP~~n~~vg~vtc~aFSP~sG~lAvGNe~grv 506 (514)
T KOG2055|consen 443 FNHDAQILAIASRVKKNALRLVHVPSCT--VFSNFPTSNTKVGHVTCMAFSPNSGYLAVGNEAGRV 506 (514)
T ss_pred eCcchhhhhhhhhccccceEEEecccee--eeccCCCCCCcccceEEEEecCCCceEEeecCCCce
Confidence 999999777765543 334433433211 1111111 11 157788999885 577777766654
No 122
>PF14517 Tachylectin: Tachylectin; PDB: 1TL2_A.
Probab=97.19 E-value=0.019 Score=46.98 Aligned_cols=161 Identities=16% Similarity=0.132 Sum_probs=84.3
Q ss_pred ccceeEeccCCcCCcceEEEccCCCEEEEecCCeEEEEe--cCCc------eEEeeee-cCcCccCeEEcCCCcEEEEeC
Q 022967 65 IQSVTRLGEGILNGPEDVCVDRNGVLYTATRDGWIKRLH--KNGT------WENWKLI-GGDTLLGITTTQENEILVCDA 135 (289)
Q Consensus 65 ~~~~~~~~~~~~~~p~~l~~d~~g~l~v~~~~g~i~~~~--~~g~------~~~~~~~-~~~p~~gl~~d~~g~l~v~~~ 135 (289)
..+..++..+ ..+-..|+..|+|.||.-.. +.+++.. .++. .+.+... -+.=. .|.+|+.|.||..+.
T Consensus 23 ~~~a~~iG~g-w~~~~~i~~~P~g~lY~I~~-~~lY~~~~~~~~~~~~~~~~~~Ig~g~W~~F~-~i~~d~~G~LYaV~~ 99 (229)
T PF14517_consen 23 SDRAITIGSG-WNNFRDIAAGPNGRLYAIRN-DGLYRGSPSSSGGNTWDSGSKQIGDGGWNSFK-FIFFDPTGVLYAVTP 99 (229)
T ss_dssp HHHSEEEESS--TT-SEEEE-TTS-EEEEET-TEEEEES---STT--HHHH-EEEE-S-GGG-S-EEEE-TTS-EEEEET
T ss_pred cchhhhcCcc-ccccceEEEcCCceEEEEEC-CceEEecCCccCcccccccCcccccCccccee-EEEecCCccEEEecc
Confidence 3455667665 56777889999999996554 4687773 1221 1222222 11223 789999999998887
Q ss_pred CCceEEEe--CCC-eEE---EEeccCCccccCccceEEcCCCcEEEeeCCCccCccccccccceecCCCEEEEE-eCCCC
Q 022967 136 DKGLLKVT--EEG-VTV---LASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKY-DPSLN 208 (289)
Q Consensus 136 ~~~i~~~~--~~g-~~~---~~~~~~~~~~~~~~~l~~~~dG~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~-~~~~~ 208 (289)
...++|.. .++ ... ....+.+...+....+.++++|.||..+.. +++++. .|+.+
T Consensus 100 ~G~lyR~~~~~~~~~~W~~~~~~~iG~~GW~~f~~vfa~~~GvLY~i~~d------------------g~~~~~~~p~~~ 161 (229)
T PF14517_consen 100 DGKLYRHPRPTNGSDNWIGGSGKKIGGTGWNDFDAVFAGPNGVLYAITPD------------------GRLYRRYRPDGG 161 (229)
T ss_dssp T-EEEEES---STT--HHH-HSEEEE-SSGGGEEEEEE-TTS-EEEEETT------------------E-EEEE---SST
T ss_pred ccceeeccCCCccCcchhhccceecccCCCccceEEEeCCCccEEEEcCC------------------CceEEeCCCCCC
Confidence 55678876 222 211 111121223344567889999999998743 567776 44432
Q ss_pred e-------EEEeeCCCCCcceEEEecCCCEEEEEeCCCCeEEEEEec
Q 022967 209 E-------TSILLDSLFFANGVALSKDEDYLVVCETFKFRCLKYWLK 248 (289)
Q Consensus 209 ~-------~~~~~~~~~~p~gl~~~~d~~~l~v~~~~~~~i~~~~~~ 248 (289)
. ..+...+...+.-|.+++++. ||.+++ +..|+|+...
T Consensus 162 ~~~W~~~s~~v~~~gw~~~~~i~~~~~g~-L~~V~~-~G~lyr~~~p 206 (229)
T PF14517_consen 162 SDRWLSGSGLVGGGGWDSFHFIFFSPDGN-LWAVKS-NGKLYRGRPP 206 (229)
T ss_dssp T--HHHH-EEEESSSGGGEEEEEE-TTS--EEEE-E-TTEEEEES--
T ss_pred CCccccccceeccCCcccceEEeeCCCCc-EEEEec-CCEEeccCCc
Confidence 1 112223444567788888887 888854 4888887543
No 123
>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins. For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.
Probab=97.18 E-value=0.00077 Score=35.90 Aligned_cols=27 Identities=30% Similarity=0.545 Sum_probs=21.2
Q ss_pred cCCcceEEEccCCCEEEEe-cCCeEEEE
Q 022967 76 LNGPEDVCVDRNGVLYTAT-RDGWIKRL 102 (289)
Q Consensus 76 ~~~p~~l~~d~~g~l~v~~-~~g~i~~~ 102 (289)
+..|.+|+++++|+||+++ .+++|.++
T Consensus 1 f~~P~gvav~~~g~i~VaD~~n~rV~vf 28 (28)
T PF01436_consen 1 FNYPHGVAVDSDGNIYVADSGNHRVQVF 28 (28)
T ss_dssp BSSEEEEEEETTSEEEEEECCCTEEEEE
T ss_pred CcCCcEEEEeCCCCEEEEECCCCEEEEC
Confidence 3579999999999999877 55677654
No 124
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=97.15 E-value=0.015 Score=50.97 Aligned_cols=179 Identities=14% Similarity=0.099 Sum_probs=103.6
Q ss_pred CcceEEEccC---CCEEEEecCCeEEEEecCCc--eEEeeeecCcCccCeEEcCCCcEEEEeCCCceEEEe--CCCeEEE
Q 022967 78 GPEDVCVDRN---GVLYTATRDGWIKRLHKNGT--WENWKLIGGDTLLGITTTQENEILVCDADKGLLKVT--EEGVTVL 150 (289)
Q Consensus 78 ~p~~l~~d~~---g~l~v~~~~g~i~~~~~~g~--~~~~~~~~~~p~~gl~~d~~g~l~v~~~~~~i~~~~--~~g~~~~ 150 (289)
...++.+.|. -.|..+..+|.+..|+.+++ +..+.....+.. .++|+++|++..+.....-+|+- ..+.+.+
T Consensus 219 ~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~~l~~l~gH~~RVs-~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL 297 (459)
T KOG0272|consen 219 RVGAAVFHPVDSDLNLATASADGTVKLWKLSQETPLQDLEGHLARVS-RVAFHPSGKFLGTASFDSTWRLWDLETKSELL 297 (459)
T ss_pred ceeeEEEccCCCccceeeeccCCceeeeccCCCcchhhhhcchhhhe-eeeecCCCceeeecccccchhhcccccchhhH
Confidence 3444555553 25556667787776664442 233333344566 89999999988876554444443 2332211
Q ss_pred EeccCCccccCccceEEcCCCcEEEeeCCCccCccccccccceecCCCEEEEEeCCCCeEEEeeC-CCCCcceEEEecCC
Q 022967 151 ASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLD-SLFFANGVALSKDE 229 (289)
Q Consensus 151 ~~~~~~~~~~~~~~l~~~~dG~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~-~~~~p~gl~~~~d~ 229 (289)
... | --....++++.+||.|..+-+. ...++||-+ .+|+-..+.. ...-..+++|+|.|
T Consensus 298 ~QE--G-Hs~~v~~iaf~~DGSL~~tGGl---------------D~~~RvWDl--Rtgr~im~L~gH~k~I~~V~fsPNG 357 (459)
T KOG0272|consen 298 LQE--G-HSKGVFSIAFQPDGSLAATGGL---------------DSLGRVWDL--RTGRCIMFLAGHIKEILSVAFSPNG 357 (459)
T ss_pred hhc--c-cccccceeEecCCCceeeccCc---------------cchhheeec--ccCcEEEEecccccceeeEeECCCc
Confidence 111 1 1135779999999999887543 234677654 4565555544 45556789999987
Q ss_pred CEEEEEeCCCCeEEEEEecCCCCcceeeeeccCCCCCCceeeCC-CCCEEEEE
Q 022967 230 DYLVVCETFKFRCLKYWLKGESKEQTEIFVENLPGGPDNIKLAP-DGSFWIAI 281 (289)
Q Consensus 230 ~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~-~G~lwv~~ 281 (289)
- ...+....+.+.+||+...... ..+....+....+...+ .|++.+..
T Consensus 358 y-~lATgs~Dnt~kVWDLR~r~~l---y~ipAH~nlVS~Vk~~p~~g~fL~Ta 406 (459)
T KOG0272|consen 358 Y-HLATGSSDNTCKVWDLRMRSEL---YTIPAHSNLVSQVKYSPQEGYFLVTA 406 (459)
T ss_pred e-EEeecCCCCcEEEeeecccccc---eecccccchhhheEecccCCeEEEEc
Confidence 5 6677677888999988754321 11111123445566664 34444443
No 125
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=97.14 E-value=0.033 Score=49.69 Aligned_cols=131 Identities=16% Similarity=0.179 Sum_probs=74.5
Q ss_pred CCCEEEEecCCeEEEEe-cCCceEEeeeecCcCccCeEEcCCCcEEEEeCCCceEEEe-CCC-eEEEEeccCCccccCcc
Q 022967 87 NGVLYTATRDGWIKRLH-KNGTWENWKLIGGDTLLGITTTQENEILVCDADKGLLKVT-EEG-VTVLASHVNGSRINLAD 163 (289)
Q Consensus 87 ~g~l~v~~~~g~i~~~~-~~g~~~~~~~~~~~p~~gl~~d~~g~l~v~~~~~~i~~~~-~~g-~~~~~~~~~~~~~~~~~ 163 (289)
++.+|+.+.+|.++.++ .+|+.. +........ ..+++ ++.+|+++....++.++ .+| ...-.....+....
T Consensus 241 ~~~vy~~~~~g~l~a~d~~tG~~~-W~~~~~~~~-~p~~~-~~~vyv~~~~G~l~~~d~~tG~~~W~~~~~~~~~~s--- 314 (377)
T TIGR03300 241 GGQVYAVSYQGRVAALDLRSGRVL-WKRDASSYQ-GPAVD-DNRLYVTDADGVVVALDRRSGSELWKNDELKYRQLT--- 314 (377)
T ss_pred CCEEEEEEcCCEEEEEECCCCcEE-EeeccCCcc-CceEe-CCEEEEECCCCeEEEEECCCCcEEEccccccCCccc---
Confidence 57888888889999999 567643 322222333 45554 57899988666799999 667 33211111111111
Q ss_pred ceEEcCCCcEEEeeCCCccCccccccccceecCCCEEEEEeCCCCeEEEeeC--CCCCcceEEEecCCCEEEEEeCCCCe
Q 022967 164 DLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLD--SLFFANGVALSKDEDYLVVCETFKFR 241 (289)
Q Consensus 164 ~l~~~~dG~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~--~~~~p~gl~~~~d~~~l~v~~~~~~~ 241 (289)
...+ .++.||+.+. .|.|+.+|+++|+..--.. +.......++. ++ .||+... ++.
T Consensus 315 sp~i-~g~~l~~~~~------------------~G~l~~~d~~tG~~~~~~~~~~~~~~~sp~~~-~~-~l~v~~~-dG~ 372 (377)
T TIGR03300 315 APAV-VGGYLVVGDF------------------EGYLHWLSREDGSFVARLKTDGSGIASPPVVV-GD-GLLVQTR-DGD 372 (377)
T ss_pred cCEE-ECCEEEEEeC------------------CCEEEEEECCCCCEEEEEEcCCCccccCCEEE-CC-EEEEEeC-Cce
Confidence 2223 3568888764 3789999988776543221 11111111222 34 4888854 467
Q ss_pred EEEE
Q 022967 242 CLKY 245 (289)
Q Consensus 242 i~~~ 245 (289)
|+.|
T Consensus 373 l~~~ 376 (377)
T TIGR03300 373 LYAF 376 (377)
T ss_pred EEEe
Confidence 7765
No 126
>COG3211 PhoX Predicted phosphatase [General function prediction only]
Probab=97.12 E-value=0.005 Score=56.22 Aligned_cols=74 Identities=20% Similarity=0.213 Sum_probs=45.0
Q ss_pred ccccCccceEEcCCCcEEEeeCCCccCccccccccceecCCCEEEEEeCCCCeEEEeeCCC--CCcceEEEecCCCEEEE
Q 022967 157 SRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSL--FFANGVALSKDEDYLVV 234 (289)
Q Consensus 157 ~~~~~~~~l~~~~dG~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~--~~p~gl~~~~d~~~l~v 234 (289)
.-+..|.+|++|+.|+||+.+....-...+. +. +-..+..=+++.+++..+..+- .--.|.+|+||+++|+|
T Consensus 497 ~~f~~PDnl~fD~~GrLWi~TDg~~s~~~~~----~~--G~~~m~~~~p~~g~~~rf~t~P~g~E~tG~~FspD~~TlFV 570 (616)
T COG3211 497 NWFNSPDNLAFDPWGRLWIQTDGSGSTLRNR----FR--GVTQMLTPDPKTGTIKRFLTGPIGCEFTGPCFSPDGKTLFV 570 (616)
T ss_pred ccccCCCceEECCCCCEEEEecCCCCccCcc----cc--cccccccCCCccceeeeeccCCCcceeecceeCCCCceEEE
Confidence 4467899999999999999765421000000 00 1113344455556665554322 23468899999999999
Q ss_pred Ee
Q 022967 235 CE 236 (289)
Q Consensus 235 ~~ 236 (289)
.-
T Consensus 571 ~v 572 (616)
T COG3211 571 NV 572 (616)
T ss_pred Ee
Confidence 74
No 127
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=97.10 E-value=0.045 Score=52.52 Aligned_cols=152 Identities=15% Similarity=0.181 Sum_probs=89.0
Q ss_pred cceEEEccCCCEEE-EecCCeEEEEe-cCCceEEeeeecCcCccCeEEcCCCcEEEEeCCCc-eEEEe-CCC--eEEEEe
Q 022967 79 PEDVCVDRNGVLYT-ATRDGWIKRLH-KNGTWENWKLIGGDTLLGITTTQENEILVCDADKG-LLKVT-EEG--VTVLAS 152 (289)
Q Consensus 79 p~~l~~d~~g~l~v-~~~~g~i~~~~-~~g~~~~~~~~~~~p~~gl~~d~~g~l~v~~~~~~-i~~~~-~~g--~~~~~~ 152 (289)
-++++++-+|+..+ +..+-.|..++ .|+..+....+...|+.++.+++++++.++..-+| +..++ .++ ...+..
T Consensus 99 ~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~~fLAvss~dG~v~iw~~~~~~~~~tl~~ 178 (933)
T KOG1274|consen 99 IRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKGNFLAVSSCDGKVQIWDLQDGILSKTLTG 178 (933)
T ss_pred ceEEEEecCCcEEEeecCceeEEEEeccccchheeecccCCceeeeeEcCCCCEEEEEecCceEEEEEcccchhhhhccc
Confidence 45688888888774 44555566666 44443333333344444999999998777654454 55666 666 222222
Q ss_pred ccCCcc---ccCccceEEcCCC-cEEEeeCCCccCccccccccceecCCCEEEEEeCCCCeEEEee-CCC--CCcceEEE
Q 022967 153 HVNGSR---INLADDLIAATDG-SIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILL-DSL--FFANGVAL 225 (289)
Q Consensus 153 ~~~~~~---~~~~~~l~~~~dG-~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~-~~~--~~p~gl~~ 225 (289)
...... -+...-+++.|+| .+.+... .+.|..|++++.+..-.. +.. ..-+-++|
T Consensus 179 v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~------------------d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~w 240 (933)
T KOG1274|consen 179 VDKDNEFILSRICTRLAWHPKGGTLAVPPV------------------DNTVKVYSRKGWELQFKLRDKLSSSKFSDLQW 240 (933)
T ss_pred CCccccccccceeeeeeecCCCCeEEeecc------------------CCeEEEEccCCceeheeecccccccceEEEEE
Confidence 111111 1234567899985 5544322 356778887765433221 221 12456789
Q ss_pred ecCCCEEEEEeCCCCeEEEEEecC
Q 022967 226 SKDEDYLVVCETFKFRCLKYWLKG 249 (289)
Q Consensus 226 ~~d~~~l~v~~~~~~~i~~~~~~~ 249 (289)
+|.|++|-.+ +..+.|.+||.+.
T Consensus 241 sPnG~YiAAs-~~~g~I~vWnv~t 263 (933)
T KOG1274|consen 241 SPNGKYIAAS-TLDGQILVWNVDT 263 (933)
T ss_pred cCCCcEEeee-ccCCcEEEEeccc
Confidence 9999865444 4568899999874
No 128
>COG3211 PhoX Predicted phosphatase [General function prediction only]
Probab=97.07 E-value=0.085 Score=48.48 Aligned_cols=126 Identities=10% Similarity=0.158 Sum_probs=78.7
Q ss_pred ccccCccceEEcC-CCcEEEeeCCCccCcccc-ccccceecCCCEEEEEeCCCC-------eEEEee--------CC---
Q 022967 157 SRINLADDLIAAT-DGSIYFSVASTKFGLHNW-GLDLLEAKPHGKLLKYDPSLN-------ETSILL--------DS--- 216 (289)
Q Consensus 157 ~~~~~~~~l~~~~-dG~lyv~~~~~~~~~~~~-~~~~~~~~~~g~i~~~~~~~~-------~~~~~~--------~~--- 216 (289)
.++-.|.++++.| .|.+|++... .+.+.. ....-+.+..|.|+|+-+.++ ++..+. ..
T Consensus 414 T~mdRpE~i~~~p~~g~Vy~~lTN--n~~r~~~~aNpr~~n~~G~I~r~~p~~~d~t~~~ftWdlF~~aG~~~~~~~~~~ 491 (616)
T COG3211 414 TPMDRPEWIAVNPGTGEVYFTLTN--NGKRSDDAANPRAKNGYGQIVRWIPATGDHTDTKFTWDLFVEAGNPSVLEGGAS 491 (616)
T ss_pred ccccCccceeecCCcceEEEEeCC--CCccccccCCCcccccccceEEEecCCCCccCccceeeeeeecCCccccccccc
Confidence 3455788999998 4789998765 221111 112223445688999988765 444442 11
Q ss_pred -------CCCcceEEEecCCCEEEEEeCCCC--------eEEEEEecCCCCcceeeeeccC-CCCCCceeeCCCC-CEEE
Q 022967 217 -------LFFANGVALSKDEDYLVVCETFKF--------RCLKYWLKGESKEQTEIFVENL-PGGPDNIKLAPDG-SFWI 279 (289)
Q Consensus 217 -------~~~p~gl~~~~d~~~l~v~~~~~~--------~i~~~~~~~~~~~~~~~~~~~~-~~~p~~i~~d~~G-~lwv 279 (289)
+..|.+|+|++.|+ ||+++.++. .+......+.+....+.|.... .+...|.++..|| +++|
T Consensus 492 ~~~~~~~f~~PDnl~fD~~Gr-LWi~TDg~~s~~~~~~~G~~~m~~~~p~~g~~~rf~t~P~g~E~tG~~FspD~~TlFV 570 (616)
T COG3211 492 ANINANWFNSPDNLAFDPWGR-LWIQTDGSGSTLRNRFRGVTQMLTPDPKTGTIKRFLTGPIGCEFTGPCFSPDGKTLFV 570 (616)
T ss_pred cCcccccccCCCceEECCCCC-EEEEecCCCCccCcccccccccccCCCccceeeeeccCCCcceeecceeCCCCceEEE
Confidence 34589999999999 888765432 2333333444555666665432 2456678888887 7999
Q ss_pred EEeCcc
Q 022967 280 AILQVF 285 (289)
Q Consensus 280 ~~~~g~ 285 (289)
+....|
T Consensus 571 ~vQHPG 576 (616)
T COG3211 571 NVQHPG 576 (616)
T ss_pred EecCCC
Confidence 876654
No 129
>PTZ00420 coronin; Provisional
Probab=97.05 E-value=0.14 Score=48.28 Aligned_cols=158 Identities=7% Similarity=-0.031 Sum_probs=83.9
Q ss_pred CcceEEEccCCC-EE-EEecCCeEEEEe-cCCceEEeeeecCcCccCeEEcCCCcEEEEeCC-CceEEEe-CCC--eEEE
Q 022967 78 GPEDVCVDRNGV-LY-TATRDGWIKRLH-KNGTWENWKLIGGDTLLGITTTQENEILVCDAD-KGLLKVT-EEG--VTVL 150 (289)
Q Consensus 78 ~p~~l~~d~~g~-l~-v~~~~g~i~~~~-~~g~~~~~~~~~~~p~~gl~~d~~g~l~v~~~~-~~i~~~~-~~g--~~~~ 150 (289)
...++++.|++. +. .+..++.|..|| ..++............ .++|+++|.++++... ..+..+| .++ +..+
T Consensus 127 ~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~~~~~V~-SlswspdG~lLat~s~D~~IrIwD~Rsg~~i~tl 205 (568)
T PTZ00420 127 KISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQINMPKKLS-SLKWNIKGNLLSGTCVGKHMHIIDPRKQEIASSF 205 (568)
T ss_pred cEEEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEecCCcEE-EEEECCCCCEEEEEecCCEEEEEECCCCcEEEEE
Confidence 356788888765 33 456789999999 4454322112223445 8999999998876543 4577777 555 3333
Q ss_pred EeccCCccc-cCccceEEcCCCcEEEeeCCCccCccccccccceecCCCEEEEEeCCC-CeEEEeeCCCCCcceE--EEe
Q 022967 151 ASHVNGSRI-NLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSL-NETSILLDSLFFANGV--ALS 226 (289)
Q Consensus 151 ~~~~~~~~~-~~~~~l~~~~dG~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~-~~~~~~~~~~~~p~gl--~~~ 226 (289)
.. ..+... .......+.+++..+++.+... .....|..+|.+. ++.......-..+..+ .++
T Consensus 206 ~g-H~g~~~s~~v~~~~fs~d~~~IlTtG~d~-------------~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D 271 (568)
T PTZ00420 206 HI-HDGGKNTKNIWIDGLGGDDNYILSTGFSK-------------NNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYD 271 (568)
T ss_pred ec-ccCCceeEEEEeeeEcCCCCEEEEEEcCC-------------CCccEEEEEECCCCCCceEEEEecCCccceEEeee
Confidence 21 111100 0001112346776666644310 0112466666552 2221111111122222 455
Q ss_pred cCCCEEEEEeCCCCeEEEEEecCC
Q 022967 227 KDEDYLVVCETFKFRCLKYWLKGE 250 (289)
Q Consensus 227 ~d~~~l~v~~~~~~~i~~~~~~~~ 250 (289)
++.+.+|++-.+.+.|+.|++..+
T Consensus 272 ~~tg~l~lsGkGD~tIr~~e~~~~ 295 (568)
T PTZ00420 272 ESTGLIYLIGKGDGNCRYYQHSLG 295 (568)
T ss_pred CCCCCEEEEEECCCeEEEEEccCC
Confidence 665668888888899999988644
No 130
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.04 E-value=0.087 Score=44.37 Aligned_cols=129 Identities=18% Similarity=0.146 Sum_probs=69.2
Q ss_pred EccCCCEEEEecCCeEEEEecCCceEEeeeecCcCccCeEEcCCCc--EEEEeC-CCceEEEeCCC---eEEEEeccCCc
Q 022967 84 VDRNGVLYTATRDGWIKRLHKNGTWENWKLIGGDTLLGITTTQENE--ILVCDA-DKGLLKVTEEG---VTVLASHVNGS 157 (289)
Q Consensus 84 ~d~~g~l~v~~~~g~i~~~~~~g~~~~~~~~~~~p~~gl~~d~~g~--l~v~~~-~~~i~~~~~~g---~~~~~~~~~~~ 157 (289)
.++||..++...+ ..|+...-..-..+.+ ||++++.-. +.++-. +.-.+.+|.++ ...+.. ...
T Consensus 43 ~~~dgs~g~a~~~-------eaGk~v~~~~lpaR~H-gi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s--~~~ 112 (366)
T COG3490 43 DARDGSFGAATLS-------EAGKIVFATALPARGH-GIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVS--QEG 112 (366)
T ss_pred eccCCceeEEEEc-------cCCceeeeeecccccC-CeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEec--ccC
Confidence 3457887754421 2344332223345667 888886542 444432 23356677444 333322 222
Q ss_pred cccCccceEEcCCCc-EEEeeCCCccCccccccccceecCCCEEEEEeCCCCeEEE---eeCCCCCcceEEEecCCCEEE
Q 022967 158 RINLADDLIAATDGS-IYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSI---LLDSLFFANGVALSKDEDYLV 233 (289)
Q Consensus 158 ~~~~~~~l~~~~dG~-lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~---~~~~~~~p~gl~~~~d~~~l~ 233 (289)
++ +--.=.+.+||. ||-+.... ....|.|=.||.+ ..+.. +..-.-.|..+.+.+||+.+.
T Consensus 113 RH-fyGHGvfs~dG~~LYATEndf-------------d~~rGViGvYd~r-~~fqrvgE~~t~GiGpHev~lm~DGrtlv 177 (366)
T COG3490 113 RH-FYGHGVFSPDGRLLYATENDF-------------DPNRGVIGVYDAR-EGFQRVGEFSTHGIGPHEVTLMADGRTLV 177 (366)
T ss_pred ce-eecccccCCCCcEEEeecCCC-------------CCCCceEEEEecc-cccceecccccCCcCcceeEEecCCcEEE
Confidence 22 222336889996 67765431 1233555566654 23333 233345688899999999888
Q ss_pred EEeC
Q 022967 234 VCET 237 (289)
Q Consensus 234 v~~~ 237 (289)
+++-
T Consensus 178 vanG 181 (366)
T COG3490 178 VANG 181 (366)
T ss_pred EeCC
Confidence 8854
No 131
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=97.04 E-value=0.17 Score=47.87 Aligned_cols=149 Identities=11% Similarity=0.121 Sum_probs=87.4
Q ss_pred cCCcceEEEccCCCEEEEecCCeEEEEe-cCCceEEee-eecCcCccCeEEcCCCcEEEEeCCCc-eEEEe-CCC--eEE
Q 022967 76 LNGPEDVCVDRNGVLYTATRDGWIKRLH-KNGTWENWK-LIGGDTLLGITTTQENEILVCDADKG-LLKVT-EEG--VTV 149 (289)
Q Consensus 76 ~~~p~~l~~d~~g~l~v~~~~g~i~~~~-~~g~~~~~~-~~~~~p~~gl~~d~~g~l~v~~~~~~-i~~~~-~~g--~~~ 149 (289)
...-..+++++||+=.++--+++|.++| .+.+..++. ....... +++..++|.++++....| ...++ ... +..
T Consensus 14 vyr~Gnl~ft~dG~sviSPvGNrvsv~dLknN~S~Tl~~e~~~NI~-~ialSp~g~lllavdE~g~~~lvs~~~r~Vlh~ 92 (893)
T KOG0291|consen 14 VYRAGNLVFTKDGNSVISPVGNRVSVFDLKNNKSYTLPLETRYNIT-RIALSPDGTLLLAVDERGRALLVSLLSRSVLHR 92 (893)
T ss_pred eeecCcEEECCCCCEEEeccCCEEEEEEccCCcceeEEeecCCceE-EEEeCCCceEEEEEcCCCcEEEEecccceeeEE
Confidence 4455678999998877777788999999 443333333 3334445 899999999888765544 34444 322 222
Q ss_pred EEeccCCccccCccceEEcCCCcEEEeeCCCccCccccccccceecCCCEEEEEeCCCCe--------EEEeeCCCCCcc
Q 022967 150 LASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNE--------TSILLDSLFFAN 221 (289)
Q Consensus 150 ~~~~~~~~~~~~~~~l~~~~dG~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~--------~~~~~~~~~~p~ 221 (289)
+.- . .....|.+.|||++++...+. .-.||+. |+..+ .+.+...+....
T Consensus 93 f~f--k----~~v~~i~fSPng~~fav~~gn----------------~lqiw~~-P~~~~~~~~pFvl~r~~~g~fddi~ 149 (893)
T KOG0291|consen 93 FNF--K----RGVGAIKFSPNGKFFAVGCGN----------------LLQIWHA-PGEIKNEFNPFVLHRTYLGHFDDIT 149 (893)
T ss_pred Eee--c----CccceEEECCCCcEEEEEecc----------------eeEEEec-CcchhcccCcceEeeeecCCcccee
Confidence 211 1 245689999999877654320 1234443 21111 122334455567
Q ss_pred eEEEecCCCEEEEEeCCCCeEEEEEecC
Q 022967 222 GVALSKDEDYLVVCETFKFRCLKYWLKG 249 (289)
Q Consensus 222 gl~~~~d~~~l~v~~~~~~~i~~~~~~~ 249 (289)
.+.|+.|.+ ++++.......+.+.+++
T Consensus 150 si~Ws~DSr-~l~~gsrD~s~rl~~v~~ 176 (893)
T KOG0291|consen 150 SIDWSDDSR-LLVTGSRDLSARLFGVDG 176 (893)
T ss_pred EEEeccCCc-eEEeccccceEEEEEecc
Confidence 789998888 555544445566666654
No 132
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=96.92 E-value=0.12 Score=46.43 Aligned_cols=143 Identities=14% Similarity=0.067 Sum_probs=78.7
Q ss_pred EEccCCCEEEEecCCeEEEEecCCc--eEEeeeecCcCccCeEEcCCCcEEEEeCCCceEEEeCCC--eE--EEEeccCC
Q 022967 83 CVDRNGVLYTATRDGWIKRLHKNGT--WENWKLIGGDTLLGITTTQENEILVCDADKGLLKVTEEG--VT--VLASHVNG 156 (289)
Q Consensus 83 ~~d~~g~l~v~~~~g~i~~~~~~g~--~~~~~~~~~~p~~gl~~d~~g~l~v~~~~~~i~~~~~~g--~~--~~~~~~~~ 156 (289)
...++|.+++....|.+++-..+|. ++..........+++.+..+|.+|++....++++-..+| .+ .+......
T Consensus 245 ~~~~dG~~~~vg~~G~~~~s~d~G~~~W~~~~~~~~~~l~~v~~~~dg~l~l~g~~G~l~~S~d~G~~~~~~~f~~~~~~ 324 (398)
T PLN00033 245 NRSPDGDYVAVSSRGNFYLTWEPGQPYWQPHNRASARRIQNMGWRADGGLWLLTRGGGLYVSKGTGLTEEDFDFEEADIK 324 (398)
T ss_pred EEcCCCCEEEEECCccEEEecCCCCcceEEecCCCccceeeeeEcCCCCEEEEeCCceEEEecCCCCcccccceeecccC
Confidence 4455777775555566666655554 344433333333488888899999988666676666555 21 23221111
Q ss_pred ccccCccceEEcCCCcEEEeeCCCccCccccccccceecCCCEEEEEeCCCCeEEEee--CCC-CCcceEEEecCCCEEE
Q 022967 157 SRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILL--DSL-FFANGVALSKDEDYLV 233 (289)
Q Consensus 157 ~~~~~~~~l~~~~dG~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~--~~~-~~p~gl~~~~d~~~l~ 233 (289)
.....+.++.+.+++.+|++-.. |.+++-...++.++... ... .+-..+.|..+++ .|
T Consensus 325 ~~~~~l~~v~~~~d~~~~a~G~~------------------G~v~~s~D~G~tW~~~~~~~~~~~~ly~v~f~~~~~-g~ 385 (398)
T PLN00033 325 SRGFGILDVGYRSKKEAWAAGGS------------------GILLRSTDGGKSWKRDKGADNIAANLYSVKFFDDKK-GF 385 (398)
T ss_pred CCCcceEEEEEcCCCcEEEEECC------------------CcEEEeCCCCcceeEccccCCCCcceeEEEEcCCCc-eE
Confidence 11134567888889999987532 55555544433444432 211 1223566665555 66
Q ss_pred EEeCCCCeEEEE
Q 022967 234 VCETFKFRCLKY 245 (289)
Q Consensus 234 v~~~~~~~i~~~ 245 (289)
+.-. +..|.+|
T Consensus 386 ~~G~-~G~il~~ 396 (398)
T PLN00033 386 VLGN-DGVLLRY 396 (398)
T ss_pred EEeC-CcEEEEe
Confidence 6632 3455555
No 133
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=96.91 E-value=0.035 Score=48.74 Aligned_cols=109 Identities=14% Similarity=0.145 Sum_probs=68.0
Q ss_pred CccCeEEcCCCcEEEEeCCCceEE-Ee-CCC--eEEEEeccCCccccCccceEEcCCCcEEEeeCCCccCccccccccce
Q 022967 118 TLLGITTTQENEILVCDADKGLLK-VT-EEG--VTVLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLE 193 (289)
Q Consensus 118 p~~gl~~d~~g~l~v~~~~~~i~~-~~-~~g--~~~~~~~~~~~~~~~~~~l~~~~dG~lyv~~~~~~~~~~~~~~~~~~ 193 (289)
.. +++|.+||.|..+..-..+-| +| .+| +-.+.. -.....++.++|+|....+-++
T Consensus 306 v~-~iaf~~DGSL~~tGGlD~~~RvWDlRtgr~im~L~g-----H~k~I~~V~fsPNGy~lATgs~-------------- 365 (459)
T KOG0272|consen 306 VF-SIAFQPDGSLAATGGLDSLGRVWDLRTGRCIMFLAG-----HIKEILSVAFSPNGYHLATGSS-------------- 365 (459)
T ss_pred cc-eeEecCCCceeeccCccchhheeecccCcEEEEecc-----cccceeeEeECCCceEEeecCC--------------
Confidence 44 899999999877642222333 23 455 333322 1235679999999987766433
Q ss_pred ecCCCEEEEEeCCCCeEEEeeCCCCCcceEEEecCCCEEEEEeCCCCeEEEEEec
Q 022967 194 AKPHGKLLKYDPSLNETSILLDSLFFANGVALSKDEDYLVVCETFKFRCLKYWLK 248 (289)
Q Consensus 194 ~~~~g~i~~~~~~~~~~~~~~~~~~~p~gl~~~~d~~~l~v~~~~~~~i~~~~~~ 248 (289)
..+.+||.+... .....+.....-...+.++|+.+.+.++....+.+..|...
T Consensus 366 -Dnt~kVWDLR~r-~~ly~ipAH~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~ 418 (459)
T KOG0272|consen 366 -DNTCKVWDLRMR-SELYTIPAHSNLVSQVKYSPQEGYFLVTASYDNTVKIWSTR 418 (459)
T ss_pred -CCcEEEeeeccc-ccceecccccchhhheEecccCCeEEEEcccCcceeeecCC
Confidence 123467766543 23333333344456789999777788888888888777543
No 134
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=96.86 E-value=0.18 Score=45.01 Aligned_cols=142 Identities=20% Similarity=0.196 Sum_probs=80.5
Q ss_pred EccCCCEEEEecCCeEEEEecCCceEEeeeec----CcCccCeEEcCCCcEEEEeCCCceEEEe-CCC-eEEEEeccCCc
Q 022967 84 VDRNGVLYTATRDGWIKRLHKNGTWENWKLIG----GDTLLGITTTQENEILVCDADKGLLKVT-EEG-VTVLASHVNGS 157 (289)
Q Consensus 84 ~d~~g~l~v~~~~g~i~~~~~~g~~~~~~~~~----~~p~~gl~~d~~g~l~v~~~~~~i~~~~-~~g-~~~~~~~~~~~ 157 (289)
++.+|++|++..+|.|+.++.+.....|.... .... +-.+..+|++|+++....++.+| .+| ...... ..+.
T Consensus 65 ~~~dg~v~~~~~~G~i~A~d~~~g~~~W~~~~~~~~~~~~-~~~~~~~G~i~~g~~~g~~y~ld~~~G~~~W~~~-~~~~ 142 (370)
T COG1520 65 ADGDGTVYVGTRDGNIFALNPDTGLVKWSYPLLGAVAQLS-GPILGSDGKIYVGSWDGKLYALDASTGTLVWSRN-VGGS 142 (370)
T ss_pred EeeCCeEEEecCCCcEEEEeCCCCcEEecccCcCcceecc-CceEEeCCeEEEecccceEEEEECCCCcEEEEEe-cCCC
Confidence 55689999998899999999544332232211 1222 33333489999998645599999 488 443322 1221
Q ss_pred cccCccceEEcCCCcEEEeeCCCccCccccccccceecCCCEEEEEeCCCCeEEEe--e-C--CCCCcceEEEecCCCEE
Q 022967 158 RINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSIL--L-D--SLFFANGVALSKDEDYL 232 (289)
Q Consensus 158 ~~~~~~~l~~~~dG~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~--~-~--~~~~p~gl~~~~d~~~l 232 (289)
. ...+-++-.++.+|+... .+.++.++.++|+..-. . . ......... ..++ .+
T Consensus 143 -~-~~~~~~v~~~~~v~~~s~------------------~g~~~al~~~tG~~~W~~~~~~~~~~~~~~~~~-~~~~-~v 200 (370)
T COG1520 143 -P-YYASPPVVGDGTVYVGTD------------------DGHLYALNADTGTLKWTYETPAPLSLSIYGSPA-IASG-TV 200 (370)
T ss_pred -e-EEecCcEEcCcEEEEecC------------------CCeEEEEEccCCcEEEEEecCCccccccccCce-eecc-eE
Confidence 1 111224556888888742 26788888887765322 1 1 111112222 2233 47
Q ss_pred EEEeCC-CCeEEEEEecC
Q 022967 233 VVCETF-KFRCLKYWLKG 249 (289)
Q Consensus 233 ~v~~~~-~~~i~~~~~~~ 249 (289)
|+...+ +..++.++...
T Consensus 201 y~~~~~~~~~~~a~~~~~ 218 (370)
T COG1520 201 YVGSDGYDGILYALNAED 218 (370)
T ss_pred EEecCCCcceEEEEEccC
Confidence 777553 34688888743
No 135
>PLN00181 protein SPA1-RELATED; Provisional
Probab=96.86 E-value=0.53 Score=46.54 Aligned_cols=147 Identities=12% Similarity=0.045 Sum_probs=82.1
Q ss_pred cceEEEccCCCEE-EEecCCeEEEEecC-----CceE---Eee-eecCcCccCeEEcCC-CcEEEE-eCCCceEEEe-CC
Q 022967 79 PEDVCVDRNGVLY-TATRDGWIKRLHKN-----GTWE---NWK-LIGGDTLLGITTTQE-NEILVC-DADKGLLKVT-EE 145 (289)
Q Consensus 79 p~~l~~d~~g~l~-v~~~~g~i~~~~~~-----g~~~---~~~-~~~~~p~~gl~~d~~-g~l~v~-~~~~~i~~~~-~~ 145 (289)
-.+++++++|++. ++..++.|..|+.+ +... ... ....... ++.+.+. +...++ ..+..+..+| .+
T Consensus 486 V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~~~~~v~-~l~~~~~~~~~las~~~Dg~v~lWd~~~ 564 (793)
T PLN00181 486 VCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELASRSKLS-GICWNSYIKSQVASSNFEGVVQVWDVAR 564 (793)
T ss_pred EEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEecccCcee-eEEeccCCCCEEEEEeCCCeEEEEECCC
Confidence 4558899988876 56678889888732 1110 011 1112234 7777653 444444 4334455566 44
Q ss_pred C--eEEEEeccCCccccCccceEEcC-CCcEEEeeCCCccCccccccccceecCCCEEEEEeCCCCeEEEeeCCCCCcce
Q 022967 146 G--VTVLASHVNGSRINLADDLIAAT-DGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANG 222 (289)
Q Consensus 146 g--~~~~~~~~~~~~~~~~~~l~~~~-dG~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~p~g 222 (289)
+ +..+.. . .....++++.+ ++.++++... .+.|..+|..++..............
T Consensus 565 ~~~~~~~~~-H----~~~V~~l~~~p~~~~~L~Sgs~-----------------Dg~v~iWd~~~~~~~~~~~~~~~v~~ 622 (793)
T PLN00181 565 SQLVTEMKE-H----EKRVWSIDYSSADPTLLASGSD-----------------DGSVKLWSINQGVSIGTIKTKANICC 622 (793)
T ss_pred CeEEEEecC-C----CCCEEEEEEcCCCCCEEEEEcC-----------------CCEEEEEECCCCcEEEEEecCCCeEE
Confidence 5 333211 1 12467889986 7777766432 35677777765543322222234456
Q ss_pred EEEec-CCCEEEEEeCCCCeEEEEEecC
Q 022967 223 VALSK-DEDYLVVCETFKFRCLKYWLKG 249 (289)
Q Consensus 223 l~~~~-d~~~l~v~~~~~~~i~~~~~~~ 249 (289)
+.|.+ ++.. +++....+.|+.||+..
T Consensus 623 v~~~~~~g~~-latgs~dg~I~iwD~~~ 649 (793)
T PLN00181 623 VQFPSESGRS-LAFGSADHKVYYYDLRN 649 (793)
T ss_pred EEEeCCCCCE-EEEEeCCCeEEEEECCC
Confidence 67754 5664 44446678999999764
No 136
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=96.85 E-value=0.23 Score=42.01 Aligned_cols=144 Identities=17% Similarity=0.150 Sum_probs=81.9
Q ss_pred ceEEEcc-CCCEEEEecCCeEEEEecCCceEEeeeecCcCccCeEEcCCCcEEEEeCCCceEEEe-CCC-eEEEEeccCC
Q 022967 80 EDVCVDR-NGVLYTATRDGWIKRLHKNGTWENWKLIGGDTLLGITTTQENEILVCDADKGLLKVT-EEG-VTVLASHVNG 156 (289)
Q Consensus 80 ~~l~~d~-~g~l~v~~~~g~i~~~~~~g~~~~~~~~~~~p~~gl~~d~~g~l~v~~~~~~i~~~~-~~g-~~~~~~~~~~ 156 (289)
..|-+++ .+.|.+++.+|.+..++.+..........+.|+...+|.++..+|+.+.++.|.++| ..+ ...+-...
T Consensus 17 S~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~~~~~~~plL~c~F~d~~~~~~G~~dg~vr~~Dln~~~~~~igth~-- 94 (323)
T KOG1036|consen 17 SSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKLKFKHGAPLLDCAFADESTIVTGGLDGQVRRYDLNTGNEDQIGTHD-- 94 (323)
T ss_pred eeEEEcCcCCcEEEEeccCcEEEEeccchhhhhheecCCceeeeeccCCceEEEeccCceEEEEEecCCcceeeccCC--
Confidence 4456665 567889999999999984332111112234555478887777899988777788888 555 33332211
Q ss_pred ccccCccceEEcCCCcEEEeeCCCccCccccccccceecCCCEEEEEeCCCCeEEEeeCCCCCcceE-EEecCCCEEEEE
Q 022967 157 SRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANGV-ALSKDEDYLVVC 235 (289)
Q Consensus 157 ~~~~~~~~l~~~~dG~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~p~gl-~~~~d~~~l~v~ 235 (289)
.....|.-.+.-...++.+ -...|-.+|+.... .......++.+ +.+-.++.|.|+
T Consensus 95 ---~~i~ci~~~~~~~~vIsgs-----------------WD~~ik~wD~R~~~---~~~~~d~~kkVy~~~v~g~~LvVg 151 (323)
T KOG1036|consen 95 ---EGIRCIEYSYEVGCVISGS-----------------WDKTIKFWDPRNKV---VVGTFDQGKKVYCMDVSGNRLVVG 151 (323)
T ss_pred ---CceEEEEeeccCCeEEEcc-----------------cCccEEEEeccccc---cccccccCceEEEEeccCCEEEEe
Confidence 1233444443223344432 23567777776311 11222223322 556667777776
Q ss_pred eCCCCeEEEEEecC
Q 022967 236 ETFKFRCLKYWLKG 249 (289)
Q Consensus 236 ~~~~~~i~~~~~~~ 249 (289)
+..+++..||+..
T Consensus 152 -~~~r~v~iyDLRn 164 (323)
T KOG1036|consen 152 -TSDRKVLIYDLRN 164 (323)
T ss_pred -ecCceEEEEEccc
Confidence 4558899999753
No 137
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=96.82 E-value=0.26 Score=45.77 Aligned_cols=114 Identities=13% Similarity=0.118 Sum_probs=62.1
Q ss_pred CCCEEEEecCCeEEEEe-cCCceEEeeeecC---------cCccCeEEcCCCcEEEEeCCCceEEEe-CCC-eEEEEecc
Q 022967 87 NGVLYTATRDGWIKRLH-KNGTWENWKLIGG---------DTLLGITTTQENEILVCDADKGLLKVT-EEG-VTVLASHV 154 (289)
Q Consensus 87 ~g~l~v~~~~g~i~~~~-~~g~~~~~~~~~~---------~p~~gl~~d~~g~l~v~~~~~~i~~~~-~~g-~~~~~~~~ 154 (289)
+|.+|+++.++.|+.+| .+|+...-..... ... ++++..++.+|+++....++.+| .+| ...-....
T Consensus 61 ~g~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~-g~~~~~~~~V~v~~~~g~v~AlD~~TG~~~W~~~~~ 139 (488)
T cd00216 61 DGDMYFTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNR-GVAYWDPRKVFFGTFDGRLVALDAETGKQVWKFGNN 139 (488)
T ss_pred CCEEEEeCCCCcEEEEECCCChhhceeCCCCCccccccccccC-CcEEccCCeEEEecCCCeEEEEECCCCCEeeeecCC
Confidence 78999999889999999 5775432111110 112 44453337899988767799999 678 43322211
Q ss_pred CC--ccccCccceEEcCCCcEEEeeCCCccCccccccccceecCCCEEEEEeCCCCeEE
Q 022967 155 NG--SRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETS 211 (289)
Q Consensus 155 ~~--~~~~~~~~l~~~~dG~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~ 211 (289)
.. ..........+. ++.+|+......+ ......+.++.+|.++|+..
T Consensus 140 ~~~~~~~~i~ssP~v~-~~~v~vg~~~~~~---------~~~~~~g~v~alD~~TG~~~ 188 (488)
T cd00216 140 DQVPPGYTMTGAPTIV-KKLVIIGSSGAEF---------FACGVRGALRAYDVETGKLL 188 (488)
T ss_pred CCcCcceEecCCCEEE-CCEEEEecccccc---------ccCCCCcEEEEEECCCCcee
Confidence 10 000011222333 3677776432110 00012467889998877643
No 138
>PRK13684 Ycf48-like protein; Provisional
Probab=96.81 E-value=0.21 Score=43.87 Aligned_cols=179 Identities=12% Similarity=0.111 Sum_probs=84.9
Q ss_pred eEEEccCCCEEEEecCCeEEEEecCC-ceEEeee---ecCcCccCeEEcCCCcEEEEeCCCceEEEeCCC--eEEEEecc
Q 022967 81 DVCVDRNGVLYTATRDGWIKRLHKNG-TWENWKL---IGGDTLLGITTTQENEILVCDADKGLLKVTEEG--VTVLASHV 154 (289)
Q Consensus 81 ~l~~d~~g~l~v~~~~g~i~~~~~~g-~~~~~~~---~~~~p~~gl~~d~~g~l~v~~~~~~i~~~~~~g--~~~~~~~~ 154 (289)
+++++ .++.|+....+.|++-...| +++.... ..+.+. .+....++.+|++.....+++-++.| .+.+....
T Consensus 94 ~v~~~-~~~~~~~G~~g~i~~S~DgG~tW~~~~~~~~~~~~~~-~i~~~~~~~~~~~g~~G~i~~S~DgG~tW~~~~~~~ 171 (334)
T PRK13684 94 SISFK-GDEGWIVGQPSLLLHTTDGGKNWTRIPLSEKLPGSPY-LITALGPGTAEMATNVGAIYRTTDGGKNWEALVEDA 171 (334)
T ss_pred eeEEc-CCcEEEeCCCceEEEECCCCCCCeEccCCcCCCCCce-EEEEECCCcceeeeccceEEEECCCCCCceeCcCCC
Confidence 34444 23455444445555543222 3443321 123344 44443345567666545577766555 44433222
Q ss_pred CCccccCccceEEcCCCcEEEeeCCCccCccccccccceecCCCEEEEEeCCCC-eEEEeeC-CCCCcceEEEecCCCEE
Q 022967 155 NGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLN-ETSILLD-SLFFANGVALSKDEDYL 232 (289)
Q Consensus 155 ~~~~~~~~~~l~~~~dG~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~-~~~~~~~-~~~~p~gl~~~~d~~~l 232 (289)
....+++.+.++|.+++... .|.+++-..+++ .++.+.. .....+++++.++++ +
T Consensus 172 ----~g~~~~i~~~~~g~~v~~g~------------------~G~i~~s~~~gg~tW~~~~~~~~~~l~~i~~~~~g~-~ 228 (334)
T PRK13684 172 ----AGVVRNLRRSPDGKYVAVSS------------------RGNFYSTWEPGQTAWTPHQRNSSRRLQSMGFQPDGN-L 228 (334)
T ss_pred ----cceEEEEEECCCCeEEEEeC------------------CceEEEEcCCCCCeEEEeeCCCcccceeeeEcCCCC-E
Confidence 22456788888876554432 256666522323 3544432 234457788888887 5
Q ss_pred EEEeCCCCeEEEEE-ecC-CCCcceeeeeccCC-CCCCceeeCCCCCEEEEEeCcccc
Q 022967 233 VVCETFKFRCLKYW-LKG-ESKEQTEIFVENLP-GGPDNIKLAPDGSFWIAILQVFIS 287 (289)
Q Consensus 233 ~v~~~~~~~i~~~~-~~~-~~~~~~~~~~~~~~-~~p~~i~~d~~G~lwv~~~~g~i~ 287 (289)
|++.. ....++. .++ .+..... ...... .....+++..++.+|++...|.+.
T Consensus 229 ~~vg~--~G~~~~~s~d~G~sW~~~~-~~~~~~~~~l~~v~~~~~~~~~~~G~~G~v~ 283 (334)
T PRK13684 229 WMLAR--GGQIRFNDPDDLESWSKPI-IPEITNGYGYLDLAYRTPGEIWAGGGNGTLL 283 (334)
T ss_pred EEEec--CCEEEEccCCCCCcccccc-CCccccccceeeEEEcCCCCEEEEcCCCeEE
Confidence 55533 2333342 222 2221110 000000 012335556667788877666543
No 139
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=96.81 E-value=0.23 Score=42.85 Aligned_cols=180 Identities=16% Similarity=0.191 Sum_probs=81.0
Q ss_pred EEEccCCCEEEEecCCeEEEEecCC-ceEEeee---ecCcCccCeEEcCCCcEEEEeCCCceEEEeCCC--eEEEEeccC
Q 022967 82 VCVDRNGVLYTATRDGWIKRLHKNG-TWENWKL---IGGDTLLGITTTQENEILVCDADKGLLKVTEEG--VTVLASHVN 155 (289)
Q Consensus 82 l~~d~~g~l~v~~~~g~i~~~~~~g-~~~~~~~---~~~~p~~gl~~d~~g~l~v~~~~~~i~~~~~~g--~~~~~~~~~ 155 (289)
|.++ +...|+....+.|++-...| +++.+.. ..+.+. ++....++..+++.....|++-.+.| .+.+.....
T Consensus 67 I~f~-~~~g~ivG~~g~ll~T~DgG~tW~~v~l~~~lpgs~~-~i~~l~~~~~~l~~~~G~iy~T~DgG~tW~~~~~~~~ 144 (302)
T PF14870_consen 67 ISFD-GNEGWIVGEPGLLLHTTDGGKTWERVPLSSKLPGSPF-GITALGDGSAELAGDRGAIYRTTDGGKTWQAVVSETS 144 (302)
T ss_dssp EEEE-TTEEEEEEETTEEEEESSTTSS-EE----TT-SS-EE-EEEEEETTEEEEEETT--EEEESSTTSSEEEEE-S--
T ss_pred EEec-CCceEEEcCCceEEEecCCCCCcEEeecCCCCCCCee-EEEEcCCCcEEEEcCCCcEEEeCCCCCCeeEcccCCc
Confidence 4444 34567544456455554333 4555432 234455 55554556677666545677776555 555443322
Q ss_pred CccccCccceEEcCCCcEEEeeCCCccCccccccccceecCCCEEEE-EeCCCCeEEEeeC-CCCCcceEEEecCCCEEE
Q 022967 156 GSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLK-YDPSLNETSILLD-SLFFANGVALSKDEDYLV 233 (289)
Q Consensus 156 ~~~~~~~~~l~~~~dG~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~-~~~~~~~~~~~~~-~~~~p~gl~~~~d~~~l~ 233 (289)
...+++...+||++..... .|.+|+ .++.......... ..+.-+.|.|++++. ||
T Consensus 145 ----gs~~~~~r~~dG~~vavs~------------------~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~-lw 201 (302)
T PF14870_consen 145 ----GSINDITRSSDGRYVAVSS------------------RGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGN-LW 201 (302)
T ss_dssp ------EEEEEE-TTS-EEEEET------------------TSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS--EE
T ss_pred ----ceeEeEEECCCCcEEEEEC------------------cccEEEEecCCCccceEEccCccceehhceecCCCC-EE
Confidence 2456777788887443332 255554 4543223444433 345667889999977 77
Q ss_pred EEeCCCCeEEEEEecCCCCcceeeeecc-CCCC-CCceeeCCCCCEEEEEeCcccc
Q 022967 234 VCETFKFRCLKYWLKGESKEQTEIFVEN-LPGG-PDNIKLAPDGSFWIAILQVFIS 287 (289)
Q Consensus 234 v~~~~~~~i~~~~~~~~~~~~~~~~~~~-~~~~-p~~i~~d~~G~lwv~~~~g~i~ 287 (289)
+...+ ..|+.=+.......-.+...+. ..++ --.++...++.+|++..+|.+.
T Consensus 202 ~~~~G-g~~~~s~~~~~~~~w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg~G~l~ 256 (302)
T PF14870_consen 202 MLARG-GQIQFSDDPDDGETWSEPIIPIKTNGYGILDLAYRPPNEIWAVGGSGTLL 256 (302)
T ss_dssp EEETT-TEEEEEE-TTEEEEE---B-TTSS--S-EEEEEESSSS-EEEEESTT-EE
T ss_pred EEeCC-cEEEEccCCCCccccccccCCcccCceeeEEEEecCCCCEEEEeCCccEE
Confidence 77643 5565544111100001111111 0111 1236777788899988777553
No 140
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=96.80 E-value=0.13 Score=41.41 Aligned_cols=118 Identities=14% Similarity=0.101 Sum_probs=67.7
Q ss_pred ceEEEe-CCC-eEEEEeccCCccccCccceEEcCCCc-EEEeeCCCccCccccccccceecCCCEEEEEeCCCCeEEEee
Q 022967 138 GLLKVT-EEG-VTVLASHVNGSRINLADDLIAATDGS-IYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILL 214 (289)
Q Consensus 138 ~i~~~~-~~g-~~~~~~~~~~~~~~~~~~l~~~~dG~-lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~ 214 (289)
.+++++ .+. ...+..... ....++++.|+|. +.+..+. ....+..||.+...+..+.
T Consensus 40 ~l~~~~~~~~~~~~i~l~~~----~~I~~~~WsP~g~~favi~g~----------------~~~~v~lyd~~~~~i~~~~ 99 (194)
T PF08662_consen 40 ELFYLNEKNIPVESIELKKE----GPIHDVAWSPNGNEFAVIYGS----------------MPAKVTLYDVKGKKIFSFG 99 (194)
T ss_pred EEEEEecCCCccceeeccCC----CceEEEEECcCCCEEEEEEcc----------------CCcccEEEcCcccEeEeec
Confidence 477776 334 443322111 1367999999996 4444322 1135666776643333332
Q ss_pred CCCCCcceEEEecCCCEEEEEeCC--CCeEEEEEecCCCCcceeeeeccCCCCCCceeeCCCCCEEEEEe
Q 022967 215 DSLFFANGVALSKDEDYLVVCETF--KFRCLKYWLKGESKEQTEIFVENLPGGPDNIKLAPDGSFWIAIL 282 (289)
Q Consensus 215 ~~~~~p~gl~~~~d~~~l~v~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~lwv~~~ 282 (289)
-...|.+.|+|+|++|.++..+ .+.|..||....+ ............+.-+++|++.++..
T Consensus 100 --~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~-----~i~~~~~~~~t~~~WsPdGr~~~ta~ 162 (194)
T PF08662_consen 100 --TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKK-----KISTFEHSDATDVEWSPDGRYLATAT 162 (194)
T ss_pred --CCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCE-----EeeccccCcEEEEEEcCCCCEEEEEE
Confidence 2345789999999988888654 3468888876321 11111111245577788887766653
No 141
>PRK13616 lipoprotein LpqB; Provisional
Probab=96.78 E-value=0.5 Score=44.89 Aligned_cols=153 Identities=14% Similarity=0.091 Sum_probs=83.5
Q ss_pred CCcceEEEccCCCEE--EEe-------cCCeEEEEecCCceEEeeeecCcCccCeEEcCCC-cEEEEeCCCceEEEe-CC
Q 022967 77 NGPEDVCVDRNGVLY--TAT-------RDGWIKRLHKNGTWENWKLIGGDTLLGITTTQEN-EILVCDADKGLLKVT-EE 145 (289)
Q Consensus 77 ~~p~~l~~d~~g~l~--v~~-------~~g~i~~~~~~g~~~~~~~~~~~p~~gl~~d~~g-~l~v~~~~~~i~~~~-~~ 145 (289)
..+.+.++.++|+.. +.. ....|+..+..|....+.. ... .+.-.|+++| .||+...+..+.++. .+
T Consensus 350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg~~~~lt~-g~~-~t~PsWspDG~~lw~v~dg~~~~~v~~~~ 427 (591)
T PRK13616 350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGGVAVQVLE-GHS-LTRPSWSLDADAVWVVVDGNTVVRVIRDP 427 (591)
T ss_pred cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCCcceeeec-CCC-CCCceECCCCCceEEEecCcceEEEeccC
Confidence 456678888888643 331 1235677665444443322 122 3366788985 688876544455544 22
Q ss_pred --C-eEEEEeccCCcc---ccCccceEEcCCCc-EEEeeCCCccCccccccccceecCCCEEEE---EeCCCCeEEE---
Q 022967 146 --G-VTVLASHVNGSR---INLADDLIAATDGS-IYFSVASTKFGLHNWGLDLLEAKPHGKLLK---YDPSLNETSI--- 212 (289)
Q Consensus 146 --g-~~~~~~~~~~~~---~~~~~~l~~~~dG~-lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~---~~~~~~~~~~--- 212 (289)
+ +..+.-...... -..+..+.+.+||. |.+... ++|+. ...++|+.+.
T Consensus 428 ~~gql~~~~vd~ge~~~~~~g~Issl~wSpDG~RiA~i~~-------------------g~v~Va~Vvr~~~G~~~l~~~ 488 (591)
T PRK13616 428 ATGQLARTPVDASAVASRVPGPISELQLSRDGVRAAMIIG-------------------GKVYLAVVEQTEDGQYALTNP 488 (591)
T ss_pred CCceEEEEeccCchhhhccCCCcCeEEECCCCCEEEEEEC-------------------CEEEEEEEEeCCCCceeeccc
Confidence 3 322211111111 12477899999994 665432 23333 2333344332
Q ss_pred --eeCCCCC-cceEEEecCCCEEEEEe-CCCCeEEEEEecCCC
Q 022967 213 --LLDSLFF-ANGVALSKDEDYLVVCE-TFKFRCLKYWLKGES 251 (289)
Q Consensus 213 --~~~~~~~-p~gl~~~~d~~~l~v~~-~~~~~i~~~~~~~~~ 251 (289)
+...+.. +..+.|..++. |++.. .....++++.++|..
T Consensus 489 ~~l~~~l~~~~~~l~W~~~~~-L~V~~~~~~~~v~~v~vDG~~ 530 (591)
T PRK13616 489 REVGPGLGDTAVSLDWRTGDS-LVVGRSDPEHPVWYVNLDGSN 530 (591)
T ss_pred EEeecccCCccccceEecCCE-EEEEecCCCCceEEEecCCcc
Confidence 3344444 47788998888 55543 344678899988764
No 142
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=96.73 E-value=0.11 Score=46.17 Aligned_cols=144 Identities=15% Similarity=0.196 Sum_probs=74.5
Q ss_pred CCCEEEEe-cCCeEEEEecCCceEEeeeecCcCcc-----CeEEcCCCc---EEEE-eCC---C--ceEEEe-CCC-eEE
Q 022967 87 NGVLYTAT-RDGWIKRLHKNGTWENWKLIGGDTLL-----GITTTQENE---ILVC-DAD---K--GLLKVT-EEG-VTV 149 (289)
Q Consensus 87 ~g~l~v~~-~~g~i~~~~~~g~~~~~~~~~~~p~~-----gl~~d~~g~---l~v~-~~~---~--~i~~~~-~~g-~~~ 149 (289)
...+++++ .+++++.|+.+|+...... .+++++ |+.+ +|. |.++ ++. + ++|+++ .+| ++.
T Consensus 67 ~kSlIigTdK~~GL~VYdL~Gk~lq~~~-~Gr~NNVDvrygf~l--~g~~vDlavas~R~~g~n~l~~f~id~~~g~L~~ 143 (381)
T PF02333_consen 67 AKSLIIGTDKKGGLYVYDLDGKELQSLP-VGRPNNVDVRYGFPL--NGKTVDLAVASDRSDGRNSLRLFRIDPDTGELTD 143 (381)
T ss_dssp GG-EEEEEETTTEEEEEETTS-EEEEE--SS-EEEEEEEEEEEE--TTEEEEEEEEEE-CCCT-EEEEEEEETTTTEEEE
T ss_pred ccceEEEEeCCCCEEEEcCCCcEEEeec-CCCcceeeeecceec--CCceEEEEEEecCcCCCCeEEEEEecCCCCcceE
Confidence 45666555 6678999998887544332 234330 2222 232 4343 432 2 378888 567 665
Q ss_pred EEeccC--CccccCccceEEc--C-CCcEEEeeCCCccCccccccccceecCCCEE--EEEeC-CCCeE--EEe--eCCC
Q 022967 150 LASHVN--GSRINLADDLIAA--T-DGSIYFSVASTKFGLHNWGLDLLEAKPHGKL--LKYDP-SLNET--SIL--LDSL 217 (289)
Q Consensus 150 ~~~~~~--~~~~~~~~~l~~~--~-dG~lyv~~~~~~~~~~~~~~~~~~~~~~g~i--~~~~~-~~~~~--~~~--~~~~ 217 (289)
+..... ...+..+++++.- + +|.+|+.... ..|.+ |++.. ..+.+ +.+ ....
T Consensus 144 v~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~----------------k~G~~~Qy~L~~~~~g~v~~~lVR~f~~~ 207 (381)
T PF02333_consen 144 VTDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNG----------------KDGRVEQYELTDDGDGKVSATLVREFKVG 207 (381)
T ss_dssp -CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEE----------------TTSEEEEEEEEE-TTSSEEEEEEEEEE-S
T ss_pred cCCCCcccccccccceeeEEeecCCCCcEEEEEec----------------CCceEEEEEEEeCCCCcEeeEEEEEecCC
Confidence 532110 1123346777763 3 5777765432 12333 44432 22322 111 1233
Q ss_pred CCcceEEEecCCCEEEEEeCCCCeEEEEEecCC
Q 022967 218 FFANGVALSKDEDYLVVCETFKFRCLKYWLKGE 250 (289)
Q Consensus 218 ~~p~gl~~~~d~~~l~v~~~~~~~i~~~~~~~~ 250 (289)
..+.|++.+....+||+++-. ..||+|+.+..
T Consensus 208 sQ~EGCVVDDe~g~LYvgEE~-~GIW~y~Aep~ 239 (381)
T PF02333_consen 208 SQPEGCVVDDETGRLYVGEED-VGIWRYDAEPE 239 (381)
T ss_dssp S-EEEEEEETTTTEEEEEETT-TEEEEEESSCC
T ss_pred CcceEEEEecccCCEEEecCc-cEEEEEecCCC
Confidence 467899999999999999976 89999998643
No 143
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=96.72 E-value=0.013 Score=52.16 Aligned_cols=150 Identities=13% Similarity=0.112 Sum_probs=88.8
Q ss_pred CCcceEEEccCC-CEE-EEecCCeEEEEe-cCCce-EEeeeecCcCccCeEEcCCCcEEEEeCCCc-eEEEe-CCC--eE
Q 022967 77 NGPEDVCVDRNG-VLY-TATRDGWIKRLH-KNGTW-ENWKLIGGDTLLGITTTQENEILVCDADKG-LLKVT-EEG--VT 148 (289)
Q Consensus 77 ~~p~~l~~d~~g-~l~-v~~~~g~i~~~~-~~g~~-~~~~~~~~~p~~gl~~d~~g~l~v~~~~~~-i~~~~-~~g--~~ 148 (289)
.-|.++-+.|++ +++ +|..+++|..+| ..|++ ..+....+..+ .|.|-++|+-+|+..+.. +..++ ..+ ++
T Consensus 300 ~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~-~i~F~~~g~rFissSDdks~riWe~~~~v~ik 378 (503)
T KOG0282|consen 300 KVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAIL-DITFVDEGRRFISSSDDKSVRIWENRIPVPIK 378 (503)
T ss_pred CCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhhhhee-eeEEccCCceEeeeccCccEEEEEcCCCccch
Confidence 458888888866 777 788999999999 56653 23333345556 788878888777765543 33333 222 22
Q ss_pred EEEeccCCccccCccceEEcCCCcEEEeeCCCccCccccccccceecCCCEEEEEeCCC-------CeEEEeeCCCCCcc
Q 022967 149 VLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSL-------NETSILLDSLFFAN 221 (289)
Q Consensus 149 ~~~~~~~~~~~~~~~~l~~~~dG~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~-------~~~~~~~~~~~~p~ 221 (289)
.+.. ...+..-.+...|+|..+.+... .+.|+.+.... +.++-. .-...+.
T Consensus 379 ~i~~----~~~hsmP~~~~~P~~~~~~aQs~-----------------dN~i~ifs~~~~~r~nkkK~feGh-~vaGys~ 436 (503)
T KOG0282|consen 379 NIAD----PEMHTMPCLTLHPNGKWFAAQSM-----------------DNYIAIFSTVPPFRLNKKKRFEGH-SVAGYSC 436 (503)
T ss_pred hhcc----hhhccCcceecCCCCCeehhhcc-----------------CceEEEEecccccccCHhhhhcce-eccCcee
Confidence 2211 12233447788888887666432 23344443210 111111 1123457
Q ss_pred eEEEecCCCEEEEEeCCCCeEEEEEecCC
Q 022967 222 GVALSKDEDYLVVCETFKFRCLKYWLKGE 250 (289)
Q Consensus 222 gl~~~~d~~~l~v~~~~~~~i~~~~~~~~ 250 (289)
.+.|+|||++|.-.+ ..++++.||....
T Consensus 437 ~v~fSpDG~~l~SGd-sdG~v~~wdwkt~ 464 (503)
T KOG0282|consen 437 QVDFSPDGRTLCSGD-SDGKVNFWDWKTT 464 (503)
T ss_pred eEEEcCCCCeEEeec-CCccEEEeechhh
Confidence 789999999665554 5688999987643
No 144
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=96.63 E-value=0.32 Score=43.40 Aligned_cols=182 Identities=15% Similarity=0.147 Sum_probs=98.4
Q ss_pred ceEEEccCCCEEEEe-cCCeEEEEe-cCCceEEeeeecCcCccCeEEcCCCcEEEEeCCCc-eEEEe--------CCC-e
Q 022967 80 EDVCVDRNGVLYTAT-RDGWIKRLH-KNGTWENWKLIGGDTLLGITTTQENEILVCDADKG-LLKVT--------EEG-V 147 (289)
Q Consensus 80 ~~l~~d~~g~l~v~~-~~g~i~~~~-~~g~~~~~~~~~~~p~~gl~~d~~g~l~v~~~~~~-i~~~~--------~~g-~ 147 (289)
.+++.++.|.+.++. -.|.||.|. ..|..-.+....-.++|-|.|..||..+++....| +..+. .++ .
T Consensus 85 ~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~ 164 (476)
T KOG0646|consen 85 HALASSNLGYFLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSADNDHSV 164 (476)
T ss_pred eeeecCCCceEEEeecccCcEEEEEeccccHHHHHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEeecccccCCCc
Confidence 456777788877655 778899998 67765443332233444788888888888765443 22221 122 2
Q ss_pred EEEEeccCCccccCccceEEcCCC---cEEEeeCCCccCccccccccceecCCCEEEEEeCCCCeEEEeeCCCCCcceEE
Q 022967 148 TVLASHVNGSRINLADDLIAATDG---SIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANGVA 224 (289)
Q Consensus 148 ~~~~~~~~~~~~~~~~~l~~~~dG---~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~p~gl~ 224 (289)
..+.. ..+.. ....+|.+++.| ++|-+.. ...+..+|...+.+..-..-...+..++
T Consensus 165 ~p~~~-f~~Ht-lsITDl~ig~Gg~~~rl~TaS~------------------D~t~k~wdlS~g~LLlti~fp~si~av~ 224 (476)
T KOG0646|consen 165 KPLHI-FSDHT-LSITDLQIGSGGTNARLYTASE------------------DRTIKLWDLSLGVLLLTITFPSSIKAVA 224 (476)
T ss_pred cceee-eccCc-ceeEEEEecCCCccceEEEecC------------------CceEEEEEeccceeeEEEecCCcceeEE
Confidence 22211 11111 124466665443 4544322 1234444544454432223334567889
Q ss_pred EecCCCEEEEEeCCCCeEEEEEecCCC---C---------c--ceeeeeccCC-CCCCceeeCCCCCEEEEEe
Q 022967 225 LSKDEDYLVVCETFKFRCLKYWLKGES---K---------E--QTEIFVENLP-GGPDNIKLAPDGSFWIAIL 282 (289)
Q Consensus 225 ~~~d~~~l~v~~~~~~~i~~~~~~~~~---~---------~--~~~~~~~~~~-~~p~~i~~d~~G~lwv~~~ 282 (289)
++|-++.+|+... .+.|+..++.+-. . . +...+...-. ....++++.-||++.++..
T Consensus 225 lDpae~~~yiGt~-~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd 296 (476)
T KOG0646|consen 225 LDPAERVVYIGTE-EGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGD 296 (476)
T ss_pred EcccccEEEecCC-cceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEEeeC
Confidence 9999999999854 5788887764321 1 0 1112221111 1345688888888776654
No 145
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=96.61 E-value=0.11 Score=49.36 Aligned_cols=152 Identities=9% Similarity=0.071 Sum_probs=92.9
Q ss_pred CcceEEEcc-CCCEE-EEecCCeEEEEe-cCCceEEeeeecCcCccCeEEcCCCcEEEEeCCCceEEE-eCCC--eEE--
Q 022967 78 GPEDVCVDR-NGVLY-TATRDGWIKRLH-KNGTWENWKLIGGDTLLGITTTQENEILVCDADKGLLKV-TEEG--VTV-- 149 (289)
Q Consensus 78 ~p~~l~~d~-~g~l~-v~~~~g~i~~~~-~~g~~~~~~~~~~~p~~gl~~d~~g~l~v~~~~~~i~~~-~~~g--~~~-- 149 (289)
..++|++.| |.+.+ .|+-||++..|+ .+-++..|.+...... .+.+.+||...|.....|..++ +..| +..
T Consensus 411 fVTcVaFnPvDDryFiSGSLD~KvRiWsI~d~~Vv~W~Dl~~lIT-Avcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~ 489 (712)
T KOG0283|consen 411 FVTCVAFNPVDDRYFISGSLDGKVRLWSISDKKVVDWNDLRDLIT-AVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDF 489 (712)
T ss_pred eeEEEEecccCCCcEeecccccceEEeecCcCeeEeehhhhhhhe-eEEeccCCceEEEEEeccEEEEEEccCCeEEEee
Confidence 356799999 66666 566889999998 5667766665444455 8999999986655445665554 4444 211
Q ss_pred EEecc--CCccccCccceEEcCCC--cEEEeeCCCccCccccccccceecCCCEEEEEeCCCCeEEEeeCCCCCc---ce
Q 022967 150 LASHV--NGSRINLADDLIAATDG--SIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFA---NG 222 (289)
Q Consensus 150 ~~~~~--~~~~~~~~~~l~~~~dG--~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~p---~g 222 (289)
.+... .....+.+.|+.+.|-. .|.|+... .+|-.||.....+..-..++.+. ..
T Consensus 490 ~I~~~~~Kk~~~~rITG~Q~~p~~~~~vLVTSnD------------------SrIRI~d~~~~~lv~KfKG~~n~~SQ~~ 551 (712)
T KOG0283|consen 490 HIRLHNKKKKQGKRITGLQFFPGDPDEVLVTSND------------------SRIRIYDGRDKDLVHKFKGFRNTSSQIS 551 (712)
T ss_pred eEeeccCccccCceeeeeEecCCCCCeEEEecCC------------------CceEEEeccchhhhhhhcccccCCccee
Confidence 11111 11112245677776522 57777643 56778886433332222333333 33
Q ss_pred EEEecCCCEEEEEeCCCCeEEEEEecC
Q 022967 223 VALSKDEDYLVVCETFKFRCLKYWLKG 249 (289)
Q Consensus 223 l~~~~d~~~l~v~~~~~~~i~~~~~~~ 249 (289)
-.|+.||+++..+. ..+.||.|+.+.
T Consensus 552 Asfs~Dgk~IVs~s-eDs~VYiW~~~~ 577 (712)
T KOG0283|consen 552 ASFSSDGKHIVSAS-EDSWVYIWKNDS 577 (712)
T ss_pred eeEccCCCEEEEee-cCceEEEEeCCC
Confidence 46888999777664 679999998754
No 146
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=96.58 E-value=0.35 Score=40.30 Aligned_cols=139 Identities=16% Similarity=0.153 Sum_probs=77.0
Q ss_pred CEEEEecCCeEEEEe-cCCc-eEEeeeecCcCccCeEEcCC-CcEEEEeCCCceEEEe-CCCeEEEEeccCCccccCccc
Q 022967 89 VLYTATRDGWIKRLH-KNGT-WENWKLIGGDTLLGITTTQE-NEILVCDADKGLLKVT-EEGVTVLASHVNGSRINLADD 164 (289)
Q Consensus 89 ~l~v~~~~g~i~~~~-~~g~-~~~~~~~~~~p~~gl~~d~~-g~l~v~~~~~~i~~~~-~~g~~~~~~~~~~~~~~~~~~ 164 (289)
.+.++..+|.++.++ .+|+ .-.+......-. .-..|.+ |-+|.+.+++..+.+| ...-.++..+..|.-+..|
T Consensus 65 fVV~GCy~g~lYfl~~~tGs~~w~f~~~~~vk~-~a~~d~~~glIycgshd~~~yalD~~~~~cVykskcgG~~f~sP-- 141 (354)
T KOG4649|consen 65 FVVLGCYSGGLYFLCVKTGSQIWNFVILETVKV-RAQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKCGGGTFVSP-- 141 (354)
T ss_pred EEEEEEccCcEEEEEecchhheeeeeehhhhcc-ceEEcCCCceEEEecCCCcEEEecccccceEEecccCCceeccc--
Confidence 455788888888888 5663 222221111111 2234444 4688888777788888 3222222234455444444
Q ss_pred eEEcC-CCcEEEeeCCCccCccccccccceecCCCEEEEEeCCCCeEEEeeC------CCCCc----ceEEE-ecCCCEE
Q 022967 165 LIAAT-DGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLD------SLFFA----NGVAL-SKDEDYL 232 (289)
Q Consensus 165 l~~~~-dG~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~------~~~~p----~gl~~-~~d~~~l 232 (289)
++++ +|.||++... |.+++.++.......+.. -+..| ..+.. .-||..+
T Consensus 142 -~i~~g~~sly~a~t~------------------G~vlavt~~~~~~~~~w~~~~~~PiF~splcv~~sv~i~~VdG~l~ 202 (354)
T KOG4649|consen 142 -VIAPGDGSLYAAITA------------------GAVLAVTKNPYSSTEFWAATRFGPIFASPLCVGSSVIITTVDGVLT 202 (354)
T ss_pred -eecCCCceEEEEecc------------------ceEEEEccCCCCcceehhhhcCCccccCceeccceEEEEEeccEEE
Confidence 6677 8999998754 789999887664443321 11111 12222 2366644
Q ss_pred EEEeCCCCeEEEEEecCC
Q 022967 233 VVCETFKFRCLKYWLKGE 250 (289)
Q Consensus 233 ~v~~~~~~~i~~~~~~~~ 250 (289)
-+.+.+ ..|+|+...|+
T Consensus 203 ~f~~sG-~qvwr~~t~Gp 219 (354)
T KOG4649|consen 203 SFDESG-RQVWRPATKGP 219 (354)
T ss_pred EEcCCC-cEEEeecCCCc
Confidence 444444 77787765554
No 147
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=96.58 E-value=0.53 Score=42.38 Aligned_cols=142 Identities=10% Similarity=0.021 Sum_probs=70.9
Q ss_pred eEEcCCCcEEEEeCCCceEEEeCCC-e--EEEEeccCCccccCccceEEcCCCcEEEeeCCCccCccccccccceecCCC
Q 022967 122 ITTTQENEILVCDADKGLLKVTEEG-V--TVLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHG 198 (289)
Q Consensus 122 l~~d~~g~l~v~~~~~~i~~~~~~g-~--~~~~~~~~~~~~~~~~~l~~~~dG~lyv~~~~~~~~~~~~~~~~~~~~~~g 198 (289)
+...++|.+++......+++-..+| . +.+... ......++.+.++|.+|+.... |
T Consensus 244 v~~~~dG~~~~vg~~G~~~~s~d~G~~~W~~~~~~----~~~~l~~v~~~~dg~l~l~g~~------------------G 301 (398)
T PLN00033 244 VNRSPDGDYVAVSSRGNFYLTWEPGQPYWQPHNRA----SARRIQNMGWRADGGLWLLTRG------------------G 301 (398)
T ss_pred EEEcCCCCEEEEECCccEEEecCCCCcceEEecCC----CccceeeeeEcCCCCEEEEeCC------------------c
Confidence 3445666666665434455555444 2 333211 1134567788889999987542 6
Q ss_pred EEEEEeCCCC-----eEEEeeC--CCCCcceEEEecCCCEEEEEeCCCCeEEEEEecCCCCcceeeeeccCCCCCCceee
Q 022967 199 KLLKYDPSLN-----ETSILLD--SLFFANGVALSKDEDYLVVCETFKFRCLKYWLKGESKEQTEIFVENLPGGPDNIKL 271 (289)
Q Consensus 199 ~i~~~~~~~~-----~~~~~~~--~~~~p~gl~~~~d~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~i~~ 271 (289)
.+++-+.++. ++..... .......+.+..++. +|++-. ...+++-.-.|++..... .....+..-..+.+
T Consensus 302 ~l~~S~d~G~~~~~~~f~~~~~~~~~~~l~~v~~~~d~~-~~a~G~-~G~v~~s~D~G~tW~~~~-~~~~~~~~ly~v~f 378 (398)
T PLN00033 302 GLYVSKGTGLTEEDFDFEEADIKSRGFGILDVGYRSKKE-AWAAGG-SGILLRSTDGGKSWKRDK-GADNIAANLYSVKF 378 (398)
T ss_pred eEEEecCCCCcccccceeecccCCCCcceEEEEEcCCCc-EEEEEC-CCcEEEeCCCCcceeEcc-ccCCCCcceeEEEE
Confidence 6666544422 1222211 112245567776666 777632 233444322233222111 01122111235666
Q ss_pred CCCCCEEEEEeCccccC
Q 022967 272 APDGSFWIAILQVFISN 288 (289)
Q Consensus 272 d~~G~lwv~~~~g~i~~ 288 (289)
..++..|+....|-|.+
T Consensus 379 ~~~~~g~~~G~~G~il~ 395 (398)
T PLN00033 379 FDDKKGFVLGNDGVLLR 395 (398)
T ss_pred cCCCceEEEeCCcEEEE
Confidence 67788999887776654
No 148
>PF14517 Tachylectin: Tachylectin; PDB: 1TL2_A.
Probab=96.54 E-value=0.0088 Score=48.90 Aligned_cols=120 Identities=22% Similarity=0.295 Sum_probs=64.2
Q ss_pred cceeEeccCCcCCcceEEEccCCCEEEEecCCeEEEEe--cCCc-------eEEee-eecCcCccCeEEcCCCcEEEEeC
Q 022967 66 QSVTRLGEGILNGPEDVCVDRNGVLYTATRDGWIKRLH--KNGT-------WENWK-LIGGDTLLGITTTQENEILVCDA 135 (289)
Q Consensus 66 ~~~~~~~~~~~~~p~~l~~d~~g~l~v~~~~g~i~~~~--~~g~-------~~~~~-~~~~~p~~gl~~d~~g~l~v~~~ 135 (289)
....+|..+....=..|++|+.|.||.-..+|.+++.. .++. .+.+. ..-.... .+.++++|.||+.+.
T Consensus 70 ~~~~~Ig~g~W~~F~~i~~d~~G~LYaV~~~G~lyR~~~~~~~~~~W~~~~~~~iG~~GW~~f~-~vfa~~~GvLY~i~~ 148 (229)
T PF14517_consen 70 SGSKQIGDGGWNSFKFIFFDPTGVLYAVTPDGKLYRHPRPTNGSDNWIGGSGKKIGGTGWNDFD-AVFAGPNGVLYAITP 148 (229)
T ss_dssp HH-EEEE-S-GGG-SEEEE-TTS-EEEEETT-EEEEES---STT--HHH-HSEEEE-SSGGGEE-EEEE-TTS-EEEEET
T ss_pred ccCcccccCcccceeEEEecCCccEEEeccccceeeccCCCccCcchhhccceecccCCCccce-EEEeCCCccEEEEcC
Confidence 44567777744445589999999999777889998887 2221 12221 1112234 688899999999886
Q ss_pred CCceEEEe-CCC-----e--EEEEeccCCccccCccceEEcCCCcEEEeeCCCccCccccccccceecCCCEEEEEeCCC
Q 022967 136 DKGLLKVT-EEG-----V--TVLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSL 207 (289)
Q Consensus 136 ~~~i~~~~-~~g-----~--~~~~~~~~~~~~~~~~~l~~~~dG~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~ 207 (289)
+..+++.. +++ . ..++. +.......-|.+.++|.||..+. +|.|||..+.+
T Consensus 149 dg~~~~~~~p~~~~~~W~~~s~~v~---~~gw~~~~~i~~~~~g~L~~V~~------------------~G~lyr~~~p~ 207 (229)
T PF14517_consen 149 DGRLYRRYRPDGGSDRWLSGSGLVG---GGGWDSFHFIFFSPDGNLWAVKS------------------NGKLYRGRPPQ 207 (229)
T ss_dssp TE-EEEE---SSTT--HHHH-EEEE---SSSGGGEEEEEE-TTS-EEEE-E------------------TTEEEEES---
T ss_pred CCceEEeCCCCCCCCccccccceec---cCCcccceEEeeCCCCcEEEEec------------------CCEEeccCCcc
Confidence 55577774 322 1 12221 12223355788899999998853 48899887654
No 149
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=96.52 E-value=0.44 Score=40.70 Aligned_cols=120 Identities=9% Similarity=0.031 Sum_probs=73.8
Q ss_pred CeEEcCC---CcEEEEeCCC-ceEEEeCCCeEEEE--eccCCc---cccCccceEEcCCCcEEEeeCCCccCccccc-cc
Q 022967 121 GITTTQE---NEILVCDADK-GLLKVTEEGVTVLA--SHVNGS---RINLADDLIAATDGSIYFSVASTKFGLHNWG-LD 190 (289)
Q Consensus 121 gl~~d~~---g~l~v~~~~~-~i~~~~~~g~~~~~--~~~~~~---~~~~~~~l~~~~dG~lyv~~~~~~~~~~~~~-~~ 190 (289)
|+++... ..||.++..+ +|-.+|.+ +..+. ....+. .-..|..|.. -.|+|||+ |..++.. ++
T Consensus 142 GLAi~~~~~~~~LYaadF~~g~IDVFd~~-f~~~~~~g~F~DP~iPagyAPFnIqn-ig~~lyVt-----YA~qd~~~~d 214 (336)
T TIGR03118 142 GLAVGPTGGGDYLYAANFRQGRIDVFKGS-FRPPPLPGSFIDPALPAGYAPFNVQN-LGGTLYVT-----YAQQDADRND 214 (336)
T ss_pred eeEEeecCCCceEEEeccCCCceEEecCc-cccccCCCCccCCCCCCCCCCcceEE-ECCeEEEE-----EEecCCcccc
Confidence 7776532 3588888653 35555421 22111 111111 1124555533 35799998 4444333 24
Q ss_pred cceecCCCEEEEEeCCCCeEEEeeC--CCCCcceEEEec------CCCEEEEEeCCCCeEEEEEec
Q 022967 191 LLEAKPHGKLLKYDPSLNETSILLD--SLFFANGVALSK------DEDYLVVCETFKFRCLKYWLK 248 (289)
Q Consensus 191 ~~~~~~~g~i~~~~~~~~~~~~~~~--~~~~p~gl~~~~------d~~~l~v~~~~~~~i~~~~~~ 248 (289)
-+.+.+.|.|-.||+++.-++.+.. .+..|.||++.| .+. |+|.+.+..+|..||..
T Consensus 215 ~v~G~G~G~VdvFd~~G~l~~r~as~g~LNaPWG~a~APa~FG~~sg~-lLVGNFGDG~InaFD~~ 279 (336)
T TIGR03118 215 EVAGAGLGYVNVFTLNGQLLRRVASSGRLNAPWGLAIAPESFGSLSGA-LLVGNFGDGTINAYDPQ 279 (336)
T ss_pred cccCCCcceEEEEcCCCcEEEEeccCCcccCCceeeeChhhhCCCCCC-eEEeecCCceeEEecCC
Confidence 4455677889999998655565654 378899999866 344 99999999999999976
No 150
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=96.48 E-value=0.37 Score=45.00 Aligned_cols=156 Identities=16% Similarity=0.172 Sum_probs=84.9
Q ss_pred cceEEEccCCCEE-EEe-cCCeEEEEecCCceEEee--eec--CcCccCeEEcCCCc-EEEEe-CCCceEEEe-CCC-eE
Q 022967 79 PEDVCVDRNGVLY-TAT-RDGWIKRLHKNGTWENWK--LIG--GDTLLGITTTQENE-ILVCD-ADKGLLKVT-EEG-VT 148 (289)
Q Consensus 79 p~~l~~d~~g~l~-v~~-~~g~i~~~~~~g~~~~~~--~~~--~~p~~gl~~d~~g~-l~v~~-~~~~i~~~~-~~g-~~ 148 (289)
=.+-++.|+|++. +++ .+=+|+++.+++.+.+.. ... ..+.+.+.|..|++ ++++. ....+..+. ... .+
T Consensus 385 Is~~aiSPdg~~Ia~st~~~~~iy~L~~~~~vk~~~v~~~~~~~~~a~~i~ftid~~k~~~~s~~~~~le~~el~~ps~k 464 (691)
T KOG2048|consen 385 ISCAAISPDGNLIAISTVSRTKIYRLQPDPNVKVINVDDVPLALLDASAISFTIDKNKLFLVSKNIFSLEEFELETPSFK 464 (691)
T ss_pred eeeeccCCCCCEEEEeeccceEEEEeccCcceeEEEeccchhhhccceeeEEEecCceEEEEecccceeEEEEecCcchh
Confidence 3445677888877 555 566788888766433221 111 11111344433333 33333 223355554 222 22
Q ss_pred EEEeccCCccccCccceEEcCCCcEEEeeCCCccCccccccccceecCCCEEEEEeCCCCeEEEeeCCCCCc-ceEEEec
Q 022967 149 VLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFA-NGVALSK 227 (289)
Q Consensus 149 ~~~~~~~~~~~~~~~~l~~~~dG~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~p-~gl~~~~ 227 (289)
.+....+-..-.....|++.++|+...+-.+ .|.|+.|+.++++...+...+..+ ..++++|
T Consensus 465 el~~~~~~~~~~~I~~l~~SsdG~yiaa~~t-----------------~g~I~v~nl~~~~~~~l~~rln~~vTa~~~~~ 527 (691)
T KOG2048|consen 465 ELKSIQSQAKCPSISRLVVSSDGNYIAAIST-----------------RGQIFVYNLETLESHLLKVRLNIDVTAAAFSP 527 (691)
T ss_pred hhhccccccCCCcceeEEEcCCCCEEEEEec-----------------cceEEEEEcccceeecchhccCcceeeeeccc
Confidence 2222111123345668899999964333222 478999999988776665343332 3456664
Q ss_pred -CCCEEEEEeCCCCeEEEEEecCCCC
Q 022967 228 -DEDYLVVCETFKFRCLKYWLKGESK 252 (289)
Q Consensus 228 -d~~~l~v~~~~~~~i~~~~~~~~~~ 252 (289)
+.+.|.+++ .+++++.||+..+.+
T Consensus 528 ~~~~~lvvat-s~nQv~efdi~~~~l 552 (691)
T KOG2048|consen 528 FVRNRLVVAT-SNNQVFEFDIEARNL 552 (691)
T ss_pred cccCcEEEEe-cCCeEEEEecchhhh
Confidence 555677775 469999999965443
No 151
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=96.45 E-value=0.51 Score=44.11 Aligned_cols=184 Identities=15% Similarity=0.078 Sum_probs=100.2
Q ss_pred CCcceEEEccCCCEEEEecCCeEEEEe-cCCceEEeeeecCcCccCeEEcCCCc-EEEEeCCCc-eEEEe-CCC-eEEEE
Q 022967 77 NGPEDVCVDRNGVLYTATRDGWIKRLH-KNGTWENWKLIGGDTLLGITTTQENE-ILVCDADKG-LLKVT-EEG-VTVLA 151 (289)
Q Consensus 77 ~~p~~l~~d~~g~l~v~~~~g~i~~~~-~~g~~~~~~~~~~~p~~gl~~d~~g~-l~v~~~~~~-i~~~~-~~g-~~~~~ 151 (289)
..-|++++-+.|+|+....+|.|..|| .+++...-.+..+.+.+.|+..+.+. +-|.-. .| ++-++ ..+ ++ +.
T Consensus 70 rsIE~L~W~e~~RLFS~g~sg~i~EwDl~~lk~~~~~d~~gg~IWsiai~p~~~~l~Igcd-dGvl~~~s~~p~~I~-~~ 147 (691)
T KOG2048|consen 70 RSIESLAWAEGGRLFSSGLSGSITEWDLHTLKQKYNIDSNGGAIWSIAINPENTILAIGCD-DGVLYDFSIGPDKIT-YK 147 (691)
T ss_pred CceeeEEEccCCeEEeecCCceEEEEecccCceeEEecCCCcceeEEEeCCccceEEeecC-CceEEEEecCCceEE-EE
Confidence 456778988899999888899999999 67766555554555555888877664 445422 33 33333 223 21 11
Q ss_pred eccCCccccCccceEEcCCCc-EEEeeCCCccCccccccccceecCCCEEEEEeCCCCeEEEe----eCCCCC-c----c
Q 022967 152 SHVNGSRINLADDLIAATDGS-IYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSIL----LDSLFF-A----N 221 (289)
Q Consensus 152 ~~~~~~~~~~~~~l~~~~dG~-lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~----~~~~~~-p----~ 221 (289)
.... ..-....++.++++|. |..+.. .|.|..+|...+..... .+++.. - -
T Consensus 148 r~l~-rq~sRvLslsw~~~~~~i~~Gs~------------------Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVW 208 (691)
T KOG2048|consen 148 RSLM-RQKSRVLSLSWNPTGTKIAGGSI------------------DGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVW 208 (691)
T ss_pred eecc-cccceEEEEEecCCccEEEeccc------------------CceEEEEEcCCCceEEEeeecccccccCCceEEE
Confidence 1111 1112455888889886 444321 35566677665543221 122222 2 2
Q ss_pred eEEEecCCCEEEEEeCCCCeEEEEEecCCCCcceeeeeccCCCCCCceeeCCC-CCEEEEEeCccc
Q 022967 222 GVALSKDEDYLVVCETFKFRCLKYWLKGESKEQTEIFVENLPGGPDNIKLAPD-GSFWIAILQVFI 286 (289)
Q Consensus 222 gl~~~~d~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~-G~lwv~~~~g~i 286 (289)
++.+-.|+. +.-+| ..+.|..||.+..++.+. +- ....-...|+++.+ .+++++...+-+
T Consensus 209 Sv~~Lrd~t-I~sgD-S~G~V~FWd~~~gTLiqS--~~-~h~adVl~Lav~~~~d~vfsaGvd~~i 269 (691)
T KOG2048|consen 209 SVLFLRDST-IASGD-SAGTVTFWDSIFGTLIQS--HS-CHDADVLALAVADNEDRVFSAGVDPKI 269 (691)
T ss_pred EEEEeecCc-EEEec-CCceEEEEcccCcchhhh--hh-hhhcceeEEEEcCCCCeEEEccCCCce
Confidence 344444543 44444 457888887654433221 10 12233445777666 466777666544
No 152
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=96.45 E-value=0.44 Score=40.72 Aligned_cols=150 Identities=19% Similarity=0.181 Sum_probs=83.6
Q ss_pred cceEEEccCCCEE-EEecCCeEEEEe-cCCceEEeeeecCcCccCeEEcC-CCcEEEE-eCCCceEEEe-CCC-eEEEEe
Q 022967 79 PEDVCVDRNGVLY-TATRDGWIKRLH-KNGTWENWKLIGGDTLLGITTTQ-ENEILVC-DADKGLLKVT-EEG-VTVLAS 152 (289)
Q Consensus 79 p~~l~~d~~g~l~-v~~~~g~i~~~~-~~g~~~~~~~~~~~p~~gl~~d~-~g~l~v~-~~~~~i~~~~-~~g-~~~~~~ 152 (289)
-.+++..++|+.. .++.+..|..+| .+|....-. -...|.++..+++ +.+..|+ -....-+.++ .++ -+.+..
T Consensus 68 i~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~ri-rf~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~ 146 (405)
T KOG1273|consen 68 ITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRI-RFDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPK 146 (405)
T ss_pred eeEEEecCCCCEeeeecCCceeEEEeccCCCceeEE-EccCccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccC
Confidence 4568888999877 566888898998 566532211 1234444666664 2344443 2222233333 334 333333
Q ss_pred ccCCccccCccceEEcCCCc-EEEeeCCCccCccccccccceecCCCEEEEEeCCCCeEEEee--CCCCCcceEEEecCC
Q 022967 153 HVNGSRINLADDLIAATDGS-IYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILL--DSLFFANGVALSKDE 229 (289)
Q Consensus 153 ~~~~~~~~~~~~l~~~~dG~-lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~--~~~~~p~gl~~~~d~ 229 (289)
..++.-...+....+++.|. ||.++ ..|.+..|+.++-+...-. ........+.++..|
T Consensus 147 d~d~dln~sas~~~fdr~g~yIitGt------------------sKGkllv~~a~t~e~vas~rits~~~IK~I~~s~~g 208 (405)
T KOG1273|consen 147 DDDGDLNSSASHGVFDRRGKYIITGT------------------SKGKLLVYDAETLECVASFRITSVQAIKQIIVSRKG 208 (405)
T ss_pred CCccccccccccccccCCCCEEEEec------------------CcceEEEEecchheeeeeeeechheeeeEEEEeccC
Confidence 33332223444457888886 44443 3489999998754322110 112334456778788
Q ss_pred CEEEEEeCCCCeEEEEEec
Q 022967 230 DYLVVCETFKFRCLKYWLK 248 (289)
Q Consensus 230 ~~l~v~~~~~~~i~~~~~~ 248 (289)
+ .++.++..+-|+.|++.
T Consensus 209 ~-~liiNtsDRvIR~ye~~ 226 (405)
T KOG1273|consen 209 R-FLIINTSDRVIRTYEIS 226 (405)
T ss_pred c-EEEEecCCceEEEEehh
Confidence 8 55555777888888865
No 153
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=96.43 E-value=0.14 Score=49.88 Aligned_cols=100 Identities=12% Similarity=0.037 Sum_probs=61.9
Q ss_pred cceEEEccCCCEEEEe-cCCeEEEEe-cCC-ceEEeeeecCcCccCeEEcCCCcEEEEeCCCce---EEEeCCC-eEEEE
Q 022967 79 PEDVCVDRNGVLYTAT-RDGWIKRLH-KNG-TWENWKLIGGDTLLGITTTQENEILVCDADKGL---LKVTEEG-VTVLA 151 (289)
Q Consensus 79 p~~l~~d~~g~l~v~~-~~g~i~~~~-~~g-~~~~~~~~~~~p~~gl~~d~~g~l~v~~~~~~i---~~~~~~g-~~~~~ 151 (289)
-.++..+|++.+.++. .++.|..|+ ... ..+++....+.+. |+.||+-|+.+.+..+.+. |+.++-| .+.+.
T Consensus 132 V~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF~~~~vl~~H~s~VK-Gvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It 210 (942)
T KOG0973|consen 132 VLDVNWSPDDSLLVSVSLDNSVIIWNAKTFELLKVLRGHQSLVK-GVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSIT 210 (942)
T ss_pred cceeccCCCccEEEEecccceEEEEccccceeeeeeeccccccc-ceEECCccCeeeeecCCceEEEEEcccceeeEeec
Confidence 4457888888888654 678999998 333 3444555567788 9999999998877655543 3333445 33332
Q ss_pred eccCC-ccccCccceEEcCCCcEEEeeCC
Q 022967 152 SHVNG-SRINLADDLIAATDGSIYFSVAS 179 (289)
Q Consensus 152 ~~~~~-~~~~~~~~l~~~~dG~lyv~~~~ 179 (289)
..... ..-.+..-+-+.|||....+...
T Consensus 211 ~pf~~~~~~T~f~RlSWSPDG~~las~nA 239 (942)
T KOG0973|consen 211 KPFEESPLTTFFLRLSWSPDGHHLASPNA 239 (942)
T ss_pred cchhhCCCcceeeecccCCCcCeecchhh
Confidence 22111 11123446778889977665544
No 154
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=96.40 E-value=0.11 Score=45.87 Aligned_cols=142 Identities=15% Similarity=0.201 Sum_probs=68.6
Q ss_pred EEccCCC-EE-EEecC--CeEEEEe-cCCceEEeeeecC-cCccCeEEcCCC-cEEEEeCCCceEEEe-CCC-eEEEEec
Q 022967 83 CVDRNGV-LY-TATRD--GWIKRLH-KNGTWENWKLIGG-DTLLGITTTQEN-EILVCDADKGLLKVT-EEG-VTVLASH 153 (289)
Q Consensus 83 ~~d~~g~-l~-v~~~~--g~i~~~~-~~g~~~~~~~~~~-~p~~gl~~d~~g-~l~v~~~~~~i~~~~-~~g-~~~~~~~ 153 (289)
.+..+|+ |. .++.+ ..++.++ .+++.+.+....+ ... |..+.+++ .+|.......|++++ .+. .+.+...
T Consensus 42 ~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~-g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e~~~vy~~ 120 (386)
T PF14583_consen 42 CFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTF-GGFLSPDDRALYYVKNGRSLRRVDLDTLEERVVYEV 120 (386)
T ss_dssp -B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TT-T-EE-TTSSEEEEEETTTEEEEEETTT--EEEEEE-
T ss_pred CcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCcc-ceEEecCCCeEEEEECCCeEEEEECCcCcEEEEEEC
Confidence 3445663 44 45433 4578888 6777777665433 244 55554444 455444457899999 665 4444332
Q ss_pred cCCccccCccceEEcCCCcEEEeeCCCcc-----CccccccccceecCCCEEEEEeCCCCeEEEeeCCCCCcceEEEec
Q 022967 154 VNGSRINLADDLIAATDGSIYFSVASTKF-----GLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANGVALSK 227 (289)
Q Consensus 154 ~~~~~~~~~~~l~~~~dG~lyv~~~~~~~-----~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~p~gl~~~~ 227 (289)
..+ +.......++.|++.++.....+. .....+.+..+..+..+|+.+|.++|+.+.+...-.+-+-+.++|
T Consensus 121 p~~--~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~~~~~wlgH~~fsP 197 (386)
T PF14583_consen 121 PDD--WKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKVVFEDTDWLGHVQFSP 197 (386)
T ss_dssp -TT--EEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEEEEEESS-EEEEEEET
T ss_pred Ccc--cccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeEEEecCccccCcccCC
Confidence 221 111123345668887765432111 111233466777788899999999999988766555545555666
No 155
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=96.40 E-value=0.099 Score=49.27 Aligned_cols=105 Identities=11% Similarity=0.088 Sum_probs=67.6
Q ss_pred CeEEcCCCcEEEEeCC-CceEEEe-CCC--eEEEEeccCCccccCccceEEcCCCcEEEeeCCCccCccccccccceecC
Q 022967 121 GITTTQENEILVCDAD-KGLLKVT-EEG--VTVLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKP 196 (289)
Q Consensus 121 gl~~d~~g~l~v~~~~-~~i~~~~-~~g--~~~~~~~~~~~~~~~~~~l~~~~dG~lyv~~~~~~~~~~~~~~~~~~~~~ 196 (289)
-+.|+|+.+...+... +.+..+| ..| ++++... ......+++.|+|+...+.. .
T Consensus 540 cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH-----~~~V~al~~Sp~Gr~LaSg~-----------------e 597 (707)
T KOG0263|consen 540 CVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFTGH-----KGPVTALAFSPCGRYLASGD-----------------E 597 (707)
T ss_pred eEEECCcccccccCCCCceEEEEEcCCCcEEEEecCC-----CCceEEEEEcCCCceEeecc-----------------c
Confidence 4788888764444332 4455566 667 5555221 12456899999997555532 2
Q ss_pred CCEEEEEeCCCCeEE-EeeCCCCCcceEEEecCCCEEEEEeCCCCeEEEEEec
Q 022967 197 HGKLLKYDPSLNETS-ILLDSLFFANGVALSKDEDYLVVCETFKFRCLKYWLK 248 (289)
Q Consensus 197 ~g~i~~~~~~~~~~~-~~~~~~~~p~gl~~~~d~~~l~v~~~~~~~i~~~~~~ 248 (289)
.+.|..+|..+++.. .+.+.-.....+.|+.||. ++++....+.|..||+.
T Consensus 598 d~~I~iWDl~~~~~v~~l~~Ht~ti~SlsFS~dg~-vLasgg~DnsV~lWD~~ 649 (707)
T KOG0263|consen 598 DGLIKIWDLANGSLVKQLKGHTGTIYSLSFSRDGN-VLASGGADNSVRLWDLT 649 (707)
T ss_pred CCcEEEEEcCCCcchhhhhcccCceeEEEEecCCC-EEEecCCCCeEEEEEch
Confidence 466777787665432 2333344567889999999 66666778999999975
No 156
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=96.32 E-value=0.96 Score=42.45 Aligned_cols=58 Identities=19% Similarity=0.207 Sum_probs=39.7
Q ss_pred CCCEEEEecCCeEEEEe-cCCceEEeeeec----Cc--------CccCeEEcCCCcEEEEeCCCceEEEe-CCC
Q 022967 87 NGVLYTATRDGWIKRLH-KNGTWENWKLIG----GD--------TLLGITTTQENEILVCDADKGLLKVT-EEG 146 (289)
Q Consensus 87 ~g~l~v~~~~g~i~~~~-~~g~~~~~~~~~----~~--------p~~gl~~d~~g~l~v~~~~~~i~~~~-~~g 146 (289)
+|.||+++.++.|+.+| .+|+..--.... .. .. ++++. ++++|+++....++.+| .+|
T Consensus 69 ~g~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~r-g~av~-~~~v~v~t~dg~l~ALDa~TG 140 (527)
T TIGR03075 69 DGVMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNR-GVALY-DGKVFFGTLDARLVALDAKTG 140 (527)
T ss_pred CCEEEEECCCCcEEEEECCCCceeeEecCCCCcccccccccccccc-cceEE-CCEEEEEcCCCEEEEEECCCC
Confidence 68999988888999999 577643211110 00 12 45554 57899988767899999 678
No 157
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.28 E-value=0.096 Score=44.11 Aligned_cols=113 Identities=14% Similarity=0.094 Sum_probs=58.7
Q ss_pred cccCccceEEcCCCcEEEeeCCCccCccccccccceecCCCEEEEEeCCCCeEEEee--C----CCC-CcceEEEecCCC
Q 022967 158 RINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILL--D----SLF-FANGVALSKDED 230 (289)
Q Consensus 158 ~~~~~~~l~~~~dG~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~--~----~~~-~p~gl~~~~d~~ 230 (289)
...+.+.++.++||++|++... .|.++.... ++-.-.+++.++.+. + .+. ..-.++.+.+.+
T Consensus 224 ~~lSiRHld~g~dgtvwfgcQy--~G~~~d~pp---------Lvg~~~~g~~l~~~~~pee~~~~~anYigsiA~n~~~g 292 (366)
T COG3490 224 RQLSIRHLDIGRDGTVWFGCQY--RGPRNDLPP---------LVGHFRKGEPLEFLDLPEEQTAAFANYIGSIAANRRDG 292 (366)
T ss_pred hhcceeeeeeCCCCcEEEEEEe--eCCCccCCc---------ceeeccCCCcCcccCCCHHHHHHHHhhhhheeecccCC
Confidence 3456789999999999998643 122221111 111112223333221 0 112 223567777777
Q ss_pred EEEEEeCCCCeEEEEEecCCCCcceeeeeccCCCCCCceeeCCCCCEEEEEeCcccc
Q 022967 231 YLVVCETFKFRCLKYWLKGESKEQTEIFVENLPGGPDNIKLAPDGSFWIAILQVFIS 287 (289)
Q Consensus 231 ~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~lwv~~~~g~i~ 287 (289)
++-++.-..++...+|.++..+-....+. -..|++.+. |-+-|++..|.+.
T Consensus 293 lV~lTSP~GN~~vi~da~tG~vv~~a~l~-----daaGva~~~-~gf~vssg~G~~~ 343 (366)
T COG3490 293 LVALTSPRGNRAVIWDAATGAVVSEAALP-----DAAGVAAAK-GGFAVSSGQGRII 343 (366)
T ss_pred eEEEecCCCCeEEEEEcCCCcEEeccccc-----ccccceecc-CceEEecCCceEE
Confidence 67777667788888887654332111111 123455554 3355566556554
No 158
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=96.28 E-value=0.48 Score=43.10 Aligned_cols=108 Identities=16% Similarity=0.063 Sum_probs=61.0
Q ss_pred CeEEcCCCc-EEEEeCC---CceEEEe-CCC-eEEEEeccCCccccCccceEEcCCCc-EEEeeCCCccCccccccccce
Q 022967 121 GITTTQENE-ILVCDAD---KGLLKVT-EEG-VTVLASHVNGSRINLADDLIAATDGS-IYFSVASTKFGLHNWGLDLLE 193 (289)
Q Consensus 121 gl~~d~~g~-l~v~~~~---~~i~~~~-~~g-~~~~~~~~~~~~~~~~~~l~~~~dG~-lyv~~~~~~~~~~~~~~~~~~ 193 (289)
..+|.+||+ |.++... ..||.+| ..+ ...+... .+.. . .=.+.|||+ |+|+...
T Consensus 242 ~P~fspDG~~l~f~~~rdg~~~iy~~dl~~~~~~~Lt~~-~gi~-~---~Ps~spdG~~ivf~Sdr-------------- 302 (425)
T COG0823 242 APAFSPDGSKLAFSSSRDGSPDIYLMDLDGKNLPRLTNG-FGIN-T---SPSWSPDGSKIVFTSDR-------------- 302 (425)
T ss_pred CccCCCCCCEEEEEECCCCCccEEEEcCCCCcceecccC-Cccc-c---CccCCCCCCEEEEEeCC--------------
Confidence 456777885 3334222 2478888 333 4333221 1100 1 225678984 5555332
Q ss_pred ecCCCEEEEEeCCCCeEEEeeCCCCCcceEEEecCCCEEEEEeCCCC--eEEEEEec
Q 022967 194 AKPHGKLLKYDPSLNETSILLDSLFFANGVALSKDEDYLVVCETFKF--RCLKYWLK 248 (289)
Q Consensus 194 ~~~~g~i~~~~~~~~~~~~~~~~~~~p~gl~~~~d~~~l~v~~~~~~--~i~~~~~~ 248 (289)
.+.-.||+++++++..+.+........--.++|||+++.+.....+ .|..+++.
T Consensus 303 -~G~p~I~~~~~~g~~~~riT~~~~~~~~p~~SpdG~~i~~~~~~~g~~~i~~~~~~ 358 (425)
T COG0823 303 -GGRPQIYLYDLEGSQVTRLTFSGGGNSNPVWSPDGDKIVFESSSGGQWDIDKNDLA 358 (425)
T ss_pred -CCCcceEEECCCCCceeEeeccCCCCcCccCCCCCCEEEEEeccCCceeeEEeccC
Confidence 1234799999998887766555444445578999997777653222 35555553
No 159
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=96.25 E-value=0.67 Score=41.81 Aligned_cols=52 Identities=23% Similarity=0.169 Sum_probs=43.7
Q ss_pred EEEEEeCCCCeEEEeeCCCCCcceEEEecCCCEEEEEeCCCCeEEEEEecCCC
Q 022967 199 KLLKYDPSLNETSILLDSLFFANGVALSKDEDYLVVCETFKFRCLKYWLKGES 251 (289)
Q Consensus 199 ~i~~~~~~~~~~~~~~~~~~~p~gl~~~~d~~~l~v~~~~~~~i~~~~~~~~~ 251 (289)
.|-.||.++++.+....++.+.-.+..++||+.+.+++ .+..|+.+|++..+
T Consensus 383 ~l~iyd~~~~e~kr~e~~lg~I~av~vs~dGK~~vvaN-dr~el~vididngn 434 (668)
T COG4946 383 KLGIYDKDGGEVKRIEKDLGNIEAVKVSPDGKKVVVAN-DRFELWVIDIDNGN 434 (668)
T ss_pred eEEEEecCCceEEEeeCCccceEEEEEcCCCcEEEEEc-CceEEEEEEecCCC
Confidence 67788988899888888888888999999999777775 45889999998653
No 160
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=96.24 E-value=0.21 Score=45.32 Aligned_cols=185 Identities=9% Similarity=0.122 Sum_probs=97.1
Q ss_pred cceEEEccCC-CEEEEecCCeEEEEecCC---ce---EEeeeecCcCccCeEEcCCCcEEEEeCCC-ceEEEeCCC--eE
Q 022967 79 PEDVCVDRNG-VLYTATRDGWIKRLHKNG---TW---ENWKLIGGDTLLGITTTQENEILVCDADK-GLLKVTEEG--VT 148 (289)
Q Consensus 79 p~~l~~d~~g-~l~v~~~~g~i~~~~~~g---~~---~~~~~~~~~p~~gl~~d~~g~l~v~~~~~-~i~~~~~~g--~~ 148 (289)
-..+++|+.| +++.+..+..|..||-.| .. ..+.....++...+.+...|..+++-.++ ....+|.+| +.
T Consensus 170 Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~aqakl~DRdG~~~~ 249 (641)
T KOG0772|consen 170 VSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGSAQAKLLDRDGFEIV 249 (641)
T ss_pred EEEeeecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEecCcceeEEccCCceee
Confidence 4458899966 567778888899998444 22 22222234443378888777644443343 355566667 22
Q ss_pred EEEe------ccCCcccc--CccceEEcCCC-cEEEeeCCCccCccccccccceecCCCEEEEEeCCCCeEEEee----C
Q 022967 149 VLAS------HVNGSRIN--LADDLIAATDG-SIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILL----D 215 (289)
Q Consensus 149 ~~~~------~~~~~~~~--~~~~l~~~~dG-~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~----~ 215 (289)
.+.. +....+.+ ....-++.|+. ..+++... .++-+||-++....+..++. .
T Consensus 250 e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~---------------DgtlRiWdv~~~k~q~qVik~k~~~ 314 (641)
T KOG0772|consen 250 EFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSY---------------DGTLRIWDVNNTKSQLQVIKTKPAG 314 (641)
T ss_pred eeeccchhhhhhhccCCceeeeeccccccCcccceEEecC---------------CCcEEEEecCCchhheeEEeeccCC
Confidence 2211 11111111 12334555543 34444321 23446776665444455442 2
Q ss_pred CCC-CcceEEEecCCCEEEEEeCCCCeEEEEEecCCCCcceeeeec--cCC-CCCCceeeCCCCCEEEE
Q 022967 216 SLF-FANGVALSKDEDYLVVCETFKFRCLKYWLKGESKEQTEIFVE--NLP-GGPDNIKLAPDGSFWIA 280 (289)
Q Consensus 216 ~~~-~p~gl~~~~d~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~--~~~-~~p~~i~~d~~G~lwv~ 280 (289)
+.+ .+..-+|++|++ ++.+.-..+.|..|+..+.. ......+. ..+ ....+|.+..||++..+
T Consensus 315 g~Rv~~tsC~~nrdg~-~iAagc~DGSIQ~W~~~~~~-v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlS 381 (641)
T KOG0772|consen 315 GKRVPVTSCAWNRDGK-LIAAGCLDGSIQIWDKGSRT-VRPVMKVKDAHLPGQDITSISFSYDGNYLLS 381 (641)
T ss_pred CcccCceeeecCCCcc-hhhhcccCCceeeeecCCcc-cccceEeeeccCCCCceeEEEeccccchhhh
Confidence 233 345668999999 46665667888888763221 11111111 111 23456778888876654
No 161
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=96.17 E-value=0.67 Score=39.21 Aligned_cols=178 Identities=17% Similarity=0.164 Sum_probs=99.7
Q ss_pred cceEEEccCCCEE-EEecCCe--EEEEe-c--CCceEEee---eecCcCccCeEEcCCCcEEEEeCCCceEEEe-CCC--
Q 022967 79 PEDVCVDRNGVLY-TATRDGW--IKRLH-K--NGTWENWK---LIGGDTLLGITTTQENEILVCDADKGLLKVT-EEG-- 146 (289)
Q Consensus 79 p~~l~~d~~g~l~-v~~~~g~--i~~~~-~--~g~~~~~~---~~~~~p~~gl~~d~~g~l~v~~~~~~i~~~~-~~g-- 146 (289)
-+..|+.|.|++. .+--++. |+.+. . +|...+.. ...+... ...|-.|+.|..+..+.....+| +.|
T Consensus 100 VMtCA~sPSg~~VAcGGLdN~Csiy~ls~~d~~g~~~v~r~l~gHtgylS-cC~f~dD~~ilT~SGD~TCalWDie~g~~ 178 (343)
T KOG0286|consen 100 VMTCAYSPSGNFVACGGLDNKCSIYPLSTRDAEGNVRVSRELAGHTGYLS-CCRFLDDNHILTGSGDMTCALWDIETGQQ 178 (343)
T ss_pred EEEEEECCCCCeEEecCcCceeEEEecccccccccceeeeeecCccceeE-EEEEcCCCceEecCCCceEEEEEcccceE
Confidence 3456777877766 4433443 33333 2 34333221 1222222 45565577776655445677777 777
Q ss_pred eEEEEeccCCccccCccceEEcC-CCcEEEeeCCCccCccccccccceecCCCEEEEEeCCCCe-EEEeeCCCCCcceEE
Q 022967 147 VTVLASHVNGSRINLADDLIAAT-DGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNE-TSILLDSLFFANGVA 224 (289)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~l~~~~-dG~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~-~~~~~~~~~~p~gl~ 224 (289)
...+... .+ -..+|.+.| +++.|++-+. .....||-+ ..+. ...+.....-.|.+.
T Consensus 179 ~~~f~GH-~g----DV~slsl~p~~~ntFvSg~c---------------D~~aklWD~--R~~~c~qtF~ghesDINsv~ 236 (343)
T KOG0286|consen 179 TQVFHGH-TG----DVMSLSLSPSDGNTFVSGGC---------------DKSAKLWDV--RSGQCVQTFEGHESDINSVR 236 (343)
T ss_pred EEEecCC-cc----cEEEEecCCCCCCeEEeccc---------------ccceeeeec--cCcceeEeecccccccceEE
Confidence 4444321 11 244778888 8999998543 123445544 3333 334444555678999
Q ss_pred EecCCCEEEEEeCCCCeEEEEEecCCCCcceeeeec-cCCCCCCceeeCCCCCEEEEEe
Q 022967 225 LSKDEDYLVVCETFKFRCLKYWLKGESKEQTEIFVE-NLPGGPDNIKLAPDGSFWIAIL 282 (289)
Q Consensus 225 ~~~d~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~-~~~~~p~~i~~d~~G~lwv~~~ 282 (289)
|.|+|. -+++.+.....+.||+..+. ....|.. +.-.....+++...|+|..+..
T Consensus 237 ffP~G~-afatGSDD~tcRlyDlRaD~--~~a~ys~~~~~~gitSv~FS~SGRlLfagy 292 (343)
T KOG0286|consen 237 FFPSGD-AFATGSDDATCRLYDLRADQ--ELAVYSHDSIICGITSVAFSKSGRLLFAGY 292 (343)
T ss_pred EccCCC-eeeecCCCceeEEEeecCCc--EEeeeccCcccCCceeEEEcccccEEEeee
Confidence 999998 56776777888889886431 1222221 1112245588888888766643
No 162
>PRK02888 nitrous-oxide reductase; Validated
Probab=96.13 E-value=0.86 Score=43.04 Aligned_cols=143 Identities=8% Similarity=0.022 Sum_probs=79.3
Q ss_pred CcceEEEccCCC-EEEEecC----CeEEEEec-CCceEEeeeecCcCccCeEEcCCCc-EEEEeCCCceEEEe-CC----
Q 022967 78 GPEDVCVDRNGV-LYTATRD----GWIKRLHK-NGTWENWKLIGGDTLLGITTTQENE-ILVCDADKGLLKVT-EE---- 145 (289)
Q Consensus 78 ~p~~l~~d~~g~-l~v~~~~----g~i~~~~~-~g~~~~~~~~~~~p~~gl~~d~~g~-l~v~~~~~~i~~~~-~~---- 145 (289)
.|..++++++|. +|+++.+ +.+..++. +....... .... ..+..++|+ .|+ .++.+..+| ..
T Consensus 236 npd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvf---ni~~-iea~vkdGK~~~V--~gn~V~VID~~t~~~~ 309 (635)
T PRK02888 236 NLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVF---NIAR-IEEAVKAGKFKTI--GGSKVPVVDGRKAANA 309 (635)
T ss_pred CcccceECCCCCEEEEeccCcccCcceeeeccccCceEEEE---chHH-HHHhhhCCCEEEE--CCCEEEEEECCccccC
Confidence 688888888665 5566422 23334431 11111111 1000 112224564 444 246688888 44
Q ss_pred C--eEEEEeccCCccccCccceEEcCCCc-EEEeeCCCccCccccccccceecCCCEEEEEeCCCCe------------E
Q 022967 146 G--VTVLASHVNGSRINLADDLIAATDGS-IYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNE------------T 210 (289)
Q Consensus 146 g--~~~~~~~~~~~~~~~~~~l~~~~dG~-lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~------------~ 210 (289)
+ +...+. . -+.|.++.++|||+ +|++... ...+-.+|..+.+ +
T Consensus 310 ~~~v~~yIP--V---GKsPHGV~vSPDGkylyVankl-----------------S~tVSVIDv~k~k~~~~~~~~~~~~v 367 (635)
T PRK02888 310 GSALTRYVP--V---PKNPHGVNTSPDGKYFIANGKL-----------------SPTVTVIDVRKLDDLFDGKIKPRDAV 367 (635)
T ss_pred CcceEEEEE--C---CCCccceEECCCCCEEEEeCCC-----------------CCcEEEEEChhhhhhhhccCCccceE
Confidence 3 222222 1 14789999999995 6776543 2345555544211 1
Q ss_pred EEeeCCCCCcceEEEecCCCEEEEEeCCCCeEEEEEecC
Q 022967 211 SILLDSLFFANGVALSKDEDYLVVCETFKFRCLKYWLKG 249 (289)
Q Consensus 211 ~~~~~~~~~p~gl~~~~d~~~l~v~~~~~~~i~~~~~~~ 249 (289)
..-..-...|-..+|+.+|+ .|.+-.....|.+|+++.
T Consensus 368 vaevevGlGPLHTaFDg~G~-aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 368 VAEPELGLGPLHTAFDGRGN-AYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred EEeeccCCCcceEEECCCCC-EEEeEeecceeEEEehHH
Confidence 11112245677789999987 999988889999999864
No 163
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=96.13 E-value=0.14 Score=48.86 Aligned_cols=146 Identities=17% Similarity=0.123 Sum_probs=82.0
Q ss_pred cceEEEccCCCEEEEe-cCCeEEEEecCCceEEeeeecCcCccCeEEcCCCcEEEE-eCCCceEEEe-CCC--eEEEEec
Q 022967 79 PEDVCVDRNGVLYTAT-RDGWIKRLHKNGTWENWKLIGGDTLLGITTTQENEILVC-DADKGLLKVT-EEG--VTVLASH 153 (289)
Q Consensus 79 p~~l~~d~~g~l~v~~-~~g~i~~~~~~g~~~~~~~~~~~p~~gl~~d~~g~l~v~-~~~~~i~~~~-~~g--~~~~~~~ 153 (289)
-.++++|.-+++.++. .+|-+..|+-.++.-.-....+.+.+++..+....+++. .....|..+| ... ++.+.
T Consensus 496 V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~-- 573 (910)
T KOG1539|consen 496 VTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKSLRLGSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREFW-- 573 (910)
T ss_pred eeEEEecCCCceEEEccCcceEEEEecCCcceeeeeccCCCcceeeeeehhhhhhhhcCceeEEEEEchhhhhhHHhh--
Confidence 4568888866766554 566555566333321111111222225555443333332 2234566666 322 22221
Q ss_pred cCCccccCccceEEcCCCcEEEeeCCCccCccccccccceecCCCEEEEEeCCCCeEEEeeCCCCCcceEEEecCCCEEE
Q 022967 154 VNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANGVALSKDEDYLV 233 (289)
Q Consensus 154 ~~~~~~~~~~~l~~~~dG~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~p~gl~~~~d~~~l~ 233 (289)
|. .+..+++++.|||+..++... .+.|..+|.-++...-...-..-+..+.++|.|++|-
T Consensus 574 --gh-~nritd~~FS~DgrWlisasm-----------------D~tIr~wDlpt~~lID~~~vd~~~~sls~SPngD~LA 633 (910)
T KOG1539|consen 574 --GH-GNRITDMTFSPDGRWLISASM-----------------DSTIRTWDLPTGTLIDGLLVDSPCTSLSFSPNGDFLA 633 (910)
T ss_pred --cc-ccceeeeEeCCCCcEEEEeec-----------------CCcEEEEeccCcceeeeEecCCcceeeEECCCCCEEE
Confidence 11 135779999999997666432 3567777765555432211223356789999999888
Q ss_pred EEeCCCCeEEEEE
Q 022967 234 VCETFKFRCLKYW 246 (289)
Q Consensus 234 v~~~~~~~i~~~~ 246 (289)
.+..+.+.|+.|.
T Consensus 634 T~Hvd~~gIylWs 646 (910)
T KOG1539|consen 634 TVHVDQNGIYLWS 646 (910)
T ss_pred EEEecCceEEEEE
Confidence 8888888898775
No 164
>PRK01029 tolB translocation protein TolB; Provisional
Probab=96.13 E-value=1 Score=41.03 Aligned_cols=130 Identities=11% Similarity=0.025 Sum_probs=67.1
Q ss_pred eEEEEecCCc-eEEeeeecCcCccCeEEcCCCc----EEEEeCC--CceEEEe-CCC-eEEEEeccCCccccCccceEEc
Q 022967 98 WIKRLHKNGT-WENWKLIGGDTLLGITTTQENE----ILVCDAD--KGLLKVT-EEG-VTVLASHVNGSRINLADDLIAA 168 (289)
Q Consensus 98 ~i~~~~~~g~-~~~~~~~~~~p~~gl~~d~~g~----l~v~~~~--~~i~~~~-~~g-~~~~~~~~~~~~~~~~~~l~~~ 168 (289)
+|+..+.||. ...+........ .-++.+||+ +|++... ..|+..+ ..| .+.+.. ..+ ......+.
T Consensus 166 ~l~~~d~dG~~~~~lt~~~~~~~-sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt~-~~g----~~~~p~wS 239 (428)
T PRK01029 166 ELWSVDYDGQNLRPLTQEHSLSI-TPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKILA-LQG----NQLMPTFS 239 (428)
T ss_pred eEEEEcCCCCCceEcccCCCCcc-cceEccCCCceEEEEEEccCCCceEEEEECCCCCceEeec-CCC----CccceEEC
Confidence 4566665553 222222222223 567888884 2344432 3588888 555 555533 222 12346899
Q ss_pred CCC-cEEEeeCCCccCccccccccceecCCCEEEE--EeCCC---CeEEEeeCC-CCCcceEEEecCCCEEEEEeC--CC
Q 022967 169 TDG-SIYFSVASTKFGLHNWGLDLLEAKPHGKLLK--YDPSL---NETSILLDS-LFFANGVALSKDEDYLVVCET--FK 239 (289)
Q Consensus 169 ~dG-~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~--~~~~~---~~~~~~~~~-~~~p~gl~~~~d~~~l~v~~~--~~ 239 (289)
||| .|.++... . +...++. ++.++ ++.+.+..+ .......+|+|||+.|+++.. +.
T Consensus 240 PDG~~Laf~s~~--~-------------g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~ 304 (428)
T PRK01029 240 PRKKLLAFISDR--Y-------------GNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGR 304 (428)
T ss_pred CCCCEEEEEECC--C-------------CCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCC
Confidence 999 46554321 0 1112333 34332 333333332 223345789999997776543 33
Q ss_pred CeEEEEEec
Q 022967 240 FRCLKYWLK 248 (289)
Q Consensus 240 ~~i~~~~~~ 248 (289)
.+|++++++
T Consensus 305 ~~ly~~~~~ 313 (428)
T PRK01029 305 PRIYIMQID 313 (428)
T ss_pred ceEEEEECc
Confidence 468888765
No 165
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.09 E-value=0.25 Score=43.42 Aligned_cols=149 Identities=13% Similarity=0.103 Sum_probs=79.5
Q ss_pred ceEEEccCCCEE-EEecCCeEEEEe-cCCce-EEeeeecCcCccCeEEcCCCcEEEEeCCCceEEEe-CCC--eEEEEec
Q 022967 80 EDVCVDRNGVLY-TATRDGWIKRLH-KNGTW-ENWKLIGGDTLLGITTTQENEILVCDADKGLLKVT-EEG--VTVLASH 153 (289)
Q Consensus 80 ~~l~~d~~g~l~-v~~~~g~i~~~~-~~g~~-~~~~~~~~~p~~gl~~d~~g~l~v~~~~~~i~~~~-~~g--~~~~~~~ 153 (289)
..+++..+|.+. ++..+|.+..++ ++-.. .......+... .|.|.+||.+.++-.......++ .+| +....+.
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~-DL~FS~dgk~lasig~d~~~VW~~~~g~~~a~~t~~ 226 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVK-DLDFSPDGKFLASIGADSARVWSVNTGAALARKTPF 226 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccc-cceeCCCCcEEEEecCCceEEEEeccCchhhhcCCc
Confidence 446676666655 555677676666 43321 11223345566 99999999877765444444444 455 4333221
Q ss_pred cCCccccCccceEEcCCC---cEEEeeCCCccCccccccccceecCCCEEEEEeCC--CC----eEEEeeCCCCCcceEE
Q 022967 154 VNGSRINLADDLIAATDG---SIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPS--LN----ETSILLDSLFFANGVA 224 (289)
Q Consensus 154 ~~~~~~~~~~~l~~~~dG---~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~--~~----~~~~~~~~~~~p~gl~ 224 (289)
.....+. .+-+..|+ .+++.+... +.++|..++.. .+ +.............++
T Consensus 227 ~k~~~~~---~cRF~~d~~~~~l~laa~~~---------------~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~ 288 (398)
T KOG0771|consen 227 SKDEMFS---SCRFSVDNAQETLRLAASQF---------------PGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLA 288 (398)
T ss_pred ccchhhh---hceecccCCCceEEEEEecC---------------CCCceeEEEeeeeccccccchhhhhhccCcceeEE
Confidence 1111222 22333333 667665431 22344443321 11 1111223344567889
Q ss_pred EecCCCEEEEEeCCCCeEEEEEec
Q 022967 225 LSKDEDYLVVCETFKFRCLKYWLK 248 (289)
Q Consensus 225 ~~~d~~~l~v~~~~~~~i~~~~~~ 248 (289)
++.||+.+-+. +..+.|..|+..
T Consensus 289 VS~dGkf~AlG-T~dGsVai~~~~ 311 (398)
T KOG0771|consen 289 VSDDGKFLALG-TMDGSVAIYDAK 311 (398)
T ss_pred EcCCCcEEEEe-ccCCcEEEEEec
Confidence 99999966666 557888888754
No 166
>PF07494 Reg_prop: Two component regulator propeller; InterPro: IPR011110 A large group of two component regulator proteins appear to have the same N-terminal structure of 14 tandem repeats. These repeats show homology to members of IPR002372 from INTERPRO and IPR001680 from INTERPRO indicating that they are likely to form a beta-propeller. This family has been built with artificially high cut-offs in order to avoid overlaps with other beta-propeller families. The fourteen repeats are likely to form two propellers; it is not clear if these structures are likely to recruit other proteins or interact with DNA.; PDB: 3V9F_D 3VA6_B 3OTT_B 4A2M_D 4A2L_B.
Probab=96.08 E-value=0.0056 Score=31.21 Aligned_cols=19 Identities=26% Similarity=0.494 Sum_probs=14.7
Q ss_pred CCCceeeCCCCCEEEEEeC
Q 022967 265 GPDNIKLAPDGSFWIAILQ 283 (289)
Q Consensus 265 ~p~~i~~d~~G~lwv~~~~ 283 (289)
....|..|++|+||||+.+
T Consensus 6 ~I~~i~~D~~G~lWigT~~ 24 (24)
T PF07494_consen 6 NIYSIYEDSDGNLWIGTYN 24 (24)
T ss_dssp CEEEEEE-TTSCEEEEETS
T ss_pred eEEEEEEcCCcCEEEEeCC
Confidence 3456899999999999863
No 167
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=96.06 E-value=0.46 Score=41.63 Aligned_cols=74 Identities=15% Similarity=0.088 Sum_probs=51.2
Q ss_pred CccceEEcCCCcEEEeeCCCccCccccccccceecCCCEEEEEeCCCCeEEEeeC-CCCCcceEEEecCCCEEEEEeCCC
Q 022967 161 LADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLD-SLFFANGVALSKDEDYLVVCETFK 239 (289)
Q Consensus 161 ~~~~l~~~~dG~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~-~~~~p~gl~~~~d~~~l~v~~~~~ 239 (289)
..+.+.+.|||+...+... ...|-..+.++|++..... ....-.-++|+.|.+ |.|+.+..
T Consensus 369 lVn~V~fSPd~r~IASaSF-----------------DkSVkLW~g~tGk~lasfRGHv~~VYqvawsaDsR-LlVS~SkD 430 (480)
T KOG0271|consen 369 LVNHVSFSPDGRYIASASF-----------------DKSVKLWDGRTGKFLASFRGHVAAVYQVAWSADSR-LLVSGSKD 430 (480)
T ss_pred heeeEEECCCccEEEEeec-----------------ccceeeeeCCCcchhhhhhhccceeEEEEeccCcc-EEEEcCCC
Confidence 5788999999976555432 2345556766676543333 333345689999888 99998988
Q ss_pred CeEEEEEecCCCC
Q 022967 240 FRCLKYWLKGESK 252 (289)
Q Consensus 240 ~~i~~~~~~~~~~ 252 (289)
..|-.|++..+++
T Consensus 431 sTLKvw~V~tkKl 443 (480)
T KOG0271|consen 431 STLKVWDVRTKKL 443 (480)
T ss_pred ceEEEEEeeeeee
Confidence 9999999876543
No 168
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=96.00 E-value=0.51 Score=41.74 Aligned_cols=149 Identities=14% Similarity=0.094 Sum_probs=85.4
Q ss_pred cceEEEccCCCEE-EEecCC--eEEEEecCCceEEeeee--cCcCccCeEEcCCCcEEEE-eCCCceEEEe-CCC-eEEE
Q 022967 79 PEDVCVDRNGVLY-TATRDG--WIKRLHKNGTWENWKLI--GGDTLLGITTTQENEILVC-DADKGLLKVT-EEG-VTVL 150 (289)
Q Consensus 79 p~~l~~d~~g~l~-v~~~~g--~i~~~~~~g~~~~~~~~--~~~p~~gl~~d~~g~l~v~-~~~~~i~~~~-~~g-~~~~ 150 (289)
-+.+.+..+|+-. .++.+- .|+.+..|+++.....- ...|+.-|.+.||.+-.++ ....-+...| ..| ....
T Consensus 227 VWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~tgd~~~~ 306 (519)
T KOG0293|consen 227 VWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSLWDVDTGDLRHL 306 (519)
T ss_pred EEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeEEecCchHheeeccCCcchhhhh
Confidence 3445666666644 333332 24444466664332221 1234337888998875554 3334466667 566 3222
Q ss_pred EeccCCccccCccceEEcCCCcEEEeeCCCccCccccccccceecCCCEEEEEeCCCCeEEEeeCCCCC--cceEEEecC
Q 022967 151 ASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFF--ANGVALSKD 228 (289)
Q Consensus 151 ~~~~~~~~~~~~~~l~~~~dG~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~--p~gl~~~~d 228 (289)
.... -...+...++-|||.=+|+.+ +...++.+|.++... .-..+.+. -..+++++|
T Consensus 307 y~~~---~~~S~~sc~W~pDg~~~V~Gs-----------------~dr~i~~wdlDgn~~-~~W~gvr~~~v~dlait~D 365 (519)
T KOG0293|consen 307 YPSG---LGFSVSSCAWCPDGFRFVTGS-----------------PDRTIIMWDLDGNIL-GNWEGVRDPKVHDLAITYD 365 (519)
T ss_pred cccC---cCCCcceeEEccCCceeEecC-----------------CCCcEEEecCCcchh-hcccccccceeEEEEEcCC
Confidence 2211 113566788999996666533 236788898885432 22233333 356889999
Q ss_pred CCEEEEEeCCCCeEEEEEecC
Q 022967 229 EDYLVVCETFKFRCLKYWLKG 249 (289)
Q Consensus 229 ~~~l~v~~~~~~~i~~~~~~~ 249 (289)
|++++.... ...|..|+...
T Consensus 366 gk~vl~v~~-d~~i~l~~~e~ 385 (519)
T KOG0293|consen 366 GKYVLLVTV-DKKIRLYNREA 385 (519)
T ss_pred CcEEEEEec-ccceeeechhh
Confidence 999998864 47788887654
No 169
>PLN00181 protein SPA1-RELATED; Provisional
Probab=95.94 E-value=2 Score=42.60 Aligned_cols=143 Identities=11% Similarity=0.098 Sum_probs=79.2
Q ss_pred ceEEEcc-CCC-EEEEecCCeEEEEe-cCCce-EEeeeecCcCccCeEEcC-CCcEEEEeCCC-ceEEEe-CCC--eEEE
Q 022967 80 EDVCVDR-NGV-LYTATRDGWIKRLH-KNGTW-ENWKLIGGDTLLGITTTQ-ENEILVCDADK-GLLKVT-EEG--VTVL 150 (289)
Q Consensus 80 ~~l~~d~-~g~-l~v~~~~g~i~~~~-~~g~~-~~~~~~~~~p~~gl~~d~-~g~l~v~~~~~-~i~~~~-~~g--~~~~ 150 (289)
.++++.+ ++. |.++..+|.|..|+ .+++. ..+....+... ++++++ ++.++++.... .+..+| ..+ +..+
T Consensus 536 ~~l~~~~~~~~~las~~~Dg~v~lWd~~~~~~~~~~~~H~~~V~-~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~ 614 (793)
T PLN00181 536 SGICWNSYIKSQVASSNFEGVVQVWDVARSQLVTEMKEHEKRVW-SIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTI 614 (793)
T ss_pred eeEEeccCCCCEEEEEeCCCeEEEEECCCCeEEEEecCCCCCEE-EEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEE
Confidence 4566665 344 44666889999998 44443 22322233445 899985 67766665444 455566 455 3333
Q ss_pred EeccCCccccCccceEEc-CCCcEEEeeCCCccCccccccccceecCCCEEEEEeCCCCeE--EEeeCCCCCcceEEEec
Q 022967 151 ASHVNGSRINLADDLIAA-TDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNET--SILLDSLFFANGVALSK 227 (289)
Q Consensus 151 ~~~~~~~~~~~~~~l~~~-~dG~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~--~~~~~~~~~p~gl~~~~ 227 (289)
.. . .....+.+. ++|.++++.. ..+.|..+|...... ..+.........+.|.
T Consensus 615 ~~--~----~~v~~v~~~~~~g~~latgs-----------------~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~- 670 (793)
T PLN00181 615 KT--K----ANICCVQFPSESGRSLAFGS-----------------ADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV- 670 (793)
T ss_pred ec--C----CCeEEEEEeCCCCCEEEEEe-----------------CCCeEEEEECCCCCccceEecCCCCCEEEEEEe-
Confidence 21 1 123456664 4676555432 246788888764431 2222222233566776
Q ss_pred CCCEEEEEeCCCCeEEEEEec
Q 022967 228 DEDYLVVCETFKFRCLKYWLK 248 (289)
Q Consensus 228 d~~~l~v~~~~~~~i~~~~~~ 248 (289)
+++.++ +-...+.|..||+.
T Consensus 671 ~~~~lv-s~s~D~~ikiWd~~ 690 (793)
T PLN00181 671 DSSTLV-SSSTDNTLKLWDLS 690 (793)
T ss_pred CCCEEE-EEECCCEEEEEeCC
Confidence 566444 44556788888875
No 170
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=95.93 E-value=1 Score=39.21 Aligned_cols=146 Identities=12% Similarity=0.062 Sum_probs=79.2
Q ss_pred eEEEccCCCEE-EEecCCeEEEEe-cCCceEEeeeecCcCccCeEEcCCCcEEEEeCCCc-eEEEe-CCC-e-EEEEecc
Q 022967 81 DVCVDRNGVLY-TATRDGWIKRLH-KNGTWENWKLIGGDTLLGITTTQENEILVCDADKG-LLKVT-EEG-V-TVLASHV 154 (289)
Q Consensus 81 ~l~~d~~g~l~-v~~~~g~i~~~~-~~g~~~~~~~~~~~p~~gl~~d~~g~l~v~~~~~~-i~~~~-~~g-~-~~~~~~~ 154 (289)
+++.+|+.++. ++..+..-+.|+ .+|.+..-....+..++.+.|..+|.+.++..-.| ++.+. ..| . ..+....
T Consensus 69 avsl~P~~~l~aTGGgDD~AflW~~~~ge~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~stg~~~~~~~~e~ 148 (399)
T KOG0296|consen 69 AVSLHPNNNLVATGGGDDLAFLWDISTGEFAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVSTGGEQWKLDQEV 148 (399)
T ss_pred EEEeCCCCceEEecCCCceEEEEEccCCcceeEecCCCCceEEEEEccCceEEEecCCCccEEEEEcccCceEEEeeccc
Confidence 46677766666 334566667776 45553221111222223788888887766543344 44444 445 2 2222111
Q ss_pred CCccccCccceEEcCCCcEEEeeCCCccCccccccccceecCCCEEEEEeCCCCeEEEeeCCCCCc-ceEEEecCCCEEE
Q 022967 155 NGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFA-NGVALSKDEDYLV 233 (289)
Q Consensus 155 ~~~~~~~~~~l~~~~dG~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~p-~gl~~~~d~~~l~ 233 (289)
.-..-|...|.+.+.++-. ..|.+|.+....+....+..+...| +-=.|.|||+.+.
T Consensus 149 -----~dieWl~WHp~a~illAG~-----------------~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~~ 206 (399)
T KOG0296|consen 149 -----EDIEWLKWHPRAHILLAGS-----------------TDGSVWMWQIPSQALCKVMSGHNSPCTCGEFIPDGKRIL 206 (399)
T ss_pred -----CceEEEEecccccEEEeec-----------------CCCcEEEEECCCcceeeEecCCCCCcccccccCCCceEE
Confidence 1223456677777666532 2466777765543333333332222 2226889999777
Q ss_pred EEeCCCCeEEEEEecC
Q 022967 234 VCETFKFRCLKYWLKG 249 (289)
Q Consensus 234 v~~~~~~~i~~~~~~~ 249 (289)
.... ...|.+|++..
T Consensus 207 tgy~-dgti~~Wn~kt 221 (399)
T KOG0296|consen 207 TGYD-DGTIIVWNPKT 221 (399)
T ss_pred EEec-CceEEEEecCC
Confidence 7755 58899998764
No 171
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=95.88 E-value=0.2 Score=44.89 Aligned_cols=176 Identities=13% Similarity=0.195 Sum_probs=92.8
Q ss_pred eEEEccCCCEE-EEecCCeEEEEe-cCCceEEeeeecCcCccCeEEcCCC-cEEEEe-CCCceEEEe-CCC--eEEEEec
Q 022967 81 DVCVDRNGVLY-TATRDGWIKRLH-KNGTWENWKLIGGDTLLGITTTQEN-EILVCD-ADKGLLKVT-EEG--VTVLASH 153 (289)
Q Consensus 81 ~l~~d~~g~l~-v~~~~g~i~~~~-~~g~~~~~~~~~~~p~~gl~~d~~g-~l~v~~-~~~~i~~~~-~~g--~~~~~~~ 153 (289)
++.+..+|.=+ .+..+..|..+| .+|+...--.....|. -+-+.+++ +++++. ....|..+| ..| +..+
T Consensus 263 d~~~s~~g~~fLS~sfD~~lKlwDtETG~~~~~f~~~~~~~-cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeY--- 338 (503)
T KOG0282|consen 263 DASFNNCGTSFLSASFDRFLKLWDTETGQVLSRFHLDKVPT-CVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEY--- 338 (503)
T ss_pred hhhccccCCeeeeeecceeeeeeccccceEEEEEecCCCce-eeecCCCCCcEEEEecCCCcEEEEeccchHHHHHH---
Confidence 34555555544 334555566666 4565433222233344 67788877 677664 335688888 555 2222
Q ss_pred cCCccccCccceEEcCCCcEEEeeCCCccCccccccccceecCCCEEEEEeCCCCeEE-EeeC-CCCCcceEEEecCCCE
Q 022967 154 VNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETS-ILLD-SLFFANGVALSKDEDY 231 (289)
Q Consensus 154 ~~~~~~~~~~~l~~~~dG~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~-~~~~-~~~~p~gl~~~~d~~~ 231 (289)
+..+...++|.+-++|+=+++... ...+..++-+..... ...+ .....-.+..+|.++
T Consensus 339 --d~hLg~i~~i~F~~~g~rFissSD-----------------dks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~- 398 (503)
T KOG0282|consen 339 --DRHLGAILDITFVDEGRRFISSSD-----------------DKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGK- 398 (503)
T ss_pred --HhhhhheeeeEEccCCceEeeecc-----------------CccEEEEEcCCCccchhhcchhhccCcceecCCCCC-
Confidence 122346778899999987777543 123333332211111 1111 122223467889888
Q ss_pred EEEEeCCCCeEEEEEecCC-CCcceeeeec-cCCCCCCceeeCCCCCEEEE
Q 022967 232 LVVCETFKFRCLKYWLKGE-SKEQTEIFVE-NLPGGPDNIKLAPDGSFWIA 280 (289)
Q Consensus 232 l~v~~~~~~~i~~~~~~~~-~~~~~~~~~~-~~~~~p~~i~~d~~G~lwv~ 280 (289)
.+++.+..+.|++|..... .+...+.|.. ..+|++-.+.+..||.+.+.
T Consensus 399 ~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSpDG~~l~S 449 (503)
T KOG0282|consen 399 WFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSPDGRTLCS 449 (503)
T ss_pred eehhhccCceEEEEecccccccCHhhhhcceeccCceeeEEEcCCCCeEEe
Confidence 5667777899999876533 2223333321 22345555555555544443
No 172
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=95.88 E-value=1 Score=38.91 Aligned_cols=183 Identities=19% Similarity=0.208 Sum_probs=81.1
Q ss_pred CCcceEEEccCCCEEEEecCCeEEEEecCC-ceEEeeeecCc----CccCeEEcCCCcEEEEeCCCceEEEeCCC--eEE
Q 022967 77 NGPEDVCVDRNGVLYTATRDGWIKRLHKNG-TWENWKLIGGD----TLLGITTTQENEILVCDADKGLLKVTEEG--VTV 149 (289)
Q Consensus 77 ~~p~~l~~d~~g~l~v~~~~g~i~~~~~~g-~~~~~~~~~~~----p~~gl~~d~~g~l~v~~~~~~i~~~~~~g--~~~ 149 (289)
....+|++..+.+-|+.-..+.|++=..-| .++........ .+..+.++. .+.|++.....+++-.+.| .+.
T Consensus 17 ~~l~dV~F~d~~~G~~VG~~g~il~T~DGG~tW~~~~~~~~~~~~~~l~~I~f~~-~~g~ivG~~g~ll~T~DgG~tW~~ 95 (302)
T PF14870_consen 17 KPLLDVAFVDPNHGWAVGAYGTILKTTDGGKTWQPVSLDLDNPFDYHLNSISFDG-NEGWIVGEPGLLLHTTDGGKTWER 95 (302)
T ss_dssp S-EEEEEESSSS-EEEEETTTEEEEESSTTSS-EE-----S-----EEEEEEEET-TEEEEEEETTEEEEESSTTSS-EE
T ss_pred CceEEEEEecCCEEEEEecCCEEEEECCCCccccccccCCCccceeeEEEEEecC-CceEEEcCCceEEEecCCCCCcEE
Confidence 456677887666777544556666554323 34433222111 122566653 4677775423344444545 554
Q ss_pred EEe--ccCCccccCccceEEcCCCcEEEeeCCCccCccccccccceecCCCEEEEEeCCCCeEEEeeC-CCCCcceEEEe
Q 022967 150 LAS--HVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLD-SLFFANGVALS 226 (289)
Q Consensus 150 ~~~--~~~~~~~~~~~~l~~~~dG~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~-~~~~p~gl~~~ 226 (289)
+.. ..++ .+..+....++.+++... .|.||+=.-.+...+.+.. ....-+.+..+
T Consensus 96 v~l~~~lpg----s~~~i~~l~~~~~~l~~~------------------~G~iy~T~DgG~tW~~~~~~~~gs~~~~~r~ 153 (302)
T PF14870_consen 96 VPLSSKLPG----SPFGITALGDGSAELAGD------------------RGAIYRTTDGGKTWQAVVSETSGSINDITRS 153 (302)
T ss_dssp ----TT-SS-----EEEEEEEETTEEEEEET------------------T--EEEESSTTSSEEEEE-S----EEEEEE-
T ss_pred eecCCCCCC----CeeEEEEcCCCcEEEEcC------------------CCcEEEeCCCCCCeeEcccCCcceeEeEEEC
Confidence 421 2222 233455555566655432 2667776544444554432 22334556677
Q ss_pred cCCCEEEEEeCCCCeEEEEEecCCCCcceeeeeccCCCCCCceeeCCCCCEEEEEeCccc
Q 022967 227 KDEDYLVVCETFKFRCLKYWLKGESKEQTEIFVENLPGGPDNIKLAPDGSFWIAILQVFI 286 (289)
Q Consensus 227 ~d~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~lwv~~~~g~i 286 (289)
+||+++.|+.. ..+++-.-.|.. ..+.+...-.....++.++++|++|+.+.+|.+
T Consensus 154 ~dG~~vavs~~--G~~~~s~~~G~~--~w~~~~r~~~~riq~~gf~~~~~lw~~~~Gg~~ 209 (302)
T PF14870_consen 154 SDGRYVAVSSR--GNFYSSWDPGQT--TWQPHNRNSSRRIQSMGFSPDGNLWMLARGGQI 209 (302)
T ss_dssp TTS-EEEEETT--SSEEEEE-TT-S--S-EEEE--SSS-EEEEEE-TTS-EEEEETTTEE
T ss_pred CCCcEEEEECc--ccEEEEecCCCc--cceEEccCccceehhceecCCCCEEEEeCCcEE
Confidence 89986666643 444433222321 112222122234566888999999999866654
No 173
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=95.84 E-value=0.65 Score=39.74 Aligned_cols=29 Identities=21% Similarity=0.155 Sum_probs=23.0
Q ss_pred cceEEEec--CCCEEEEEeCCCCeEEEEEec
Q 022967 220 ANGVALSK--DEDYLVVCETFKFRCLKYWLK 248 (289)
Q Consensus 220 p~gl~~~~--d~~~l~v~~~~~~~i~~~~~~ 248 (289)
..|+++.. .+.+||.++..+++|-+||-.
T Consensus 140 YkGLAi~~~~~~~~LYaadF~~g~IDVFd~~ 170 (336)
T TIGR03118 140 YKGLAVGPTGGGDYLYAANFRQGRIDVFKGS 170 (336)
T ss_pred eeeeEEeecCCCceEEEeccCCCceEEecCc
Confidence 46777764 367899999999999999743
No 174
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=95.82 E-value=1 Score=40.37 Aligned_cols=150 Identities=9% Similarity=0.096 Sum_probs=81.9
Q ss_pred cCCcceEEEccCCCEE-EEecCCeEEEEe------c--CCceEEee--eecCcCccCeEEcC---CCcEEEEeCCCceEE
Q 022967 76 LNGPEDVCVDRNGVLY-TATRDGWIKRLH------K--NGTWENWK--LIGGDTLLGITTTQ---ENEILVCDADKGLLK 141 (289)
Q Consensus 76 ~~~p~~l~~d~~g~l~-v~~~~g~i~~~~------~--~g~~~~~~--~~~~~p~~gl~~d~---~g~l~v~~~~~~i~~ 141 (289)
+..-.++.+..||.++ .+..||.|+.|. + ++....+. .....+.+.+..+. +.+||-+..++.+..
T Consensus 123 YQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~ 202 (476)
T KOG0646|consen 123 YQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKL 202 (476)
T ss_pred ccceeEEEEeCCCcEEEecCCCccEEEEEEEeecccccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEE
Confidence 3445667777777766 555778887776 1 22221111 11223444555553 346777765555555
Q ss_pred Ee-CCC--eEEEEeccCCccccCccceEEcCCC-cEEEeeCCCccCccccccccceecCCCEEEEEe-------------
Q 022967 142 VT-EEG--VTVLASHVNGSRINLADDLIAATDG-SIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYD------------- 204 (289)
Q Consensus 142 ~~-~~g--~~~~~~~~~~~~~~~~~~l~~~~dG-~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~------------- 204 (289)
++ ..| +..+.. + ..+..+++||-+ .+|++... |.|+..+
T Consensus 203 wdlS~g~LLlti~f--p----~si~av~lDpae~~~yiGt~~------------------G~I~~~~~~~~~~~~~~v~~ 258 (476)
T KOG0646|consen 203 WDLSLGVLLLTITF--P----SSIKAVALDPAERVVYIGTEE------------------GKIFQNLLFKLSGQSAGVNQ 258 (476)
T ss_pred EEeccceeeEEEec--C----CcceeEEEcccccEEEecCCc------------------ceEEeeehhcCCcccccccc
Confidence 66 555 332222 1 356788999965 58887543 3333332
Q ss_pred ----CCCCeEEEeeCCCC--CcceEEEecCCCEEEEEeCCCCeEEEEEecCC
Q 022967 205 ----PSLNETSILLDSLF--FANGVALSKDEDYLVVCETFKFRCLKYWLKGE 250 (289)
Q Consensus 205 ----~~~~~~~~~~~~~~--~p~gl~~~~d~~~l~v~~~~~~~i~~~~~~~~ 250 (289)
.++-++..+..+-. ...-++++-||. |.++-...+.+.+||+...
T Consensus 259 k~~~~~~t~~~~~~Gh~~~~~ITcLais~Dgt-lLlSGd~dg~VcvWdi~S~ 309 (476)
T KOG0646|consen 259 KGRHEENTQINVLVGHENESAITCLAISTDGT-LLLSGDEDGKVCVWDIYSK 309 (476)
T ss_pred cccccccceeeeeccccCCcceeEEEEecCcc-EEEeeCCCCCEEEEecchH
Confidence 11112222222222 445688999998 5555555688888887643
No 175
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=95.78 E-value=0.51 Score=41.95 Aligned_cols=100 Identities=21% Similarity=0.452 Sum_probs=52.2
Q ss_pred CcceEEE--cc-CCCEE--EEecCCeEEEEe----cCCce-----EEeeeecCcCccCeEEcC-CCcEEEEeCCCceEEE
Q 022967 78 GPEDVCV--DR-NGVLY--TATRDGWIKRLH----KNGTW-----ENWKLIGGDTLLGITTTQ-ENEILVCDADKGLLKV 142 (289)
Q Consensus 78 ~p~~l~~--d~-~g~l~--v~~~~g~i~~~~----~~g~~-----~~~~~~~~~p~~gl~~d~-~g~l~v~~~~~~i~~~ 142 (289)
.|++++. ++ +|.+| +...+|.+..+. .+|.+ +.| .....+- |+++|. .|.||+++...|||++
T Consensus 157 e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f-~~~sQ~E-GCVVDDe~g~LYvgEE~~GIW~y 234 (381)
T PF02333_consen 157 EPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREF-KVGSQPE-GCVVDDETGRLYVGEEDVGIWRY 234 (381)
T ss_dssp SEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEE-E-SS-EE-EEEEETTTTEEEEEETTTEEEEE
T ss_pred cceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEe-cCCCcce-EEEEecccCCEEEecCccEEEEE
Confidence 3555554 33 57777 445667776654 24432 222 2234566 899984 5789999988999999
Q ss_pred e--CCC--eEEEEeccCCcccc-CccceEE--cCC--CcEEEeeCC
Q 022967 143 T--EEG--VTVLASHVNGSRIN-LADDLIA--ATD--GSIYFSVAS 179 (289)
Q Consensus 143 ~--~~g--~~~~~~~~~~~~~~-~~~~l~~--~~d--G~lyv~~~~ 179 (289)
+ +++ ...++....+..+. -..+|++ ..+ |.|.+++..
T Consensus 235 ~Aep~~~~~~~~v~~~~g~~l~aDvEGlaly~~~~g~gYLivSsQG 280 (381)
T PF02333_consen 235 DAEPEGGNDRTLVASADGDGLVADVEGLALYYGSDGKGYLIVSSQG 280 (381)
T ss_dssp ESSCCC-S--EEEEEBSSSSB-S-EEEEEEEE-CCC-EEEEEEEGG
T ss_pred ecCCCCCCcceeeecccccccccCccceEEEecCCCCeEEEEEcCC
Confidence 9 333 33333322332221 2345554 344 457777643
No 176
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=95.76 E-value=0.7 Score=41.58 Aligned_cols=199 Identities=13% Similarity=0.075 Sum_probs=93.3
Q ss_pred CCCEEEEe-cCCeEEEEe--cCC---ceEEeee--------ecCcCccCeEEcCCCcEEEEeCC-------CceEEEeCC
Q 022967 87 NGVLYTAT-RDGWIKRLH--KNG---TWENWKL--------IGGDTLLGITTTQENEILVCDAD-------KGLLKVTEE 145 (289)
Q Consensus 87 ~g~l~v~~-~~g~i~~~~--~~g---~~~~~~~--------~~~~p~~gl~~d~~g~l~v~~~~-------~~i~~~~~~ 145 (289)
...|++-. ..++|+.+| .|- ++.+..+ ....|+ -...-++|+++|+.-+ .+++.+|.+
T Consensus 87 Rr~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PH-T~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~ 165 (461)
T PF05694_consen 87 RRYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPH-TVHCLPDGRIMISALGDADGNGPGGFVLLDGE 165 (461)
T ss_dssp S-EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEE-EEEE-SS--EEEEEEEETTS-S--EEEEE-TT
T ss_pred CCcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCc-eeeecCCccEEEEeccCCCCCCCCcEEEEcCc
Confidence 34677655 778999999 232 2333222 124566 5556688999997321 358888855
Q ss_pred CeEEEEec-cCCccccCccceEEcCCCcEEEeeCCCccCccccc------cccceecCCCEEEEEeCCCCeEEEeeCCC-
Q 022967 146 GVTVLASH-VNGSRINLADDLIAATDGSIYFSVASTKFGLHNWG------LDLLEAKPHGKLLKYDPSLNETSILLDSL- 217 (289)
Q Consensus 146 g~~~~~~~-~~~~~~~~~~~l~~~~dG~lyv~~~~~~~~~~~~~------~~~~~~~~~g~i~~~~~~~~~~~~~~~~~- 217 (289)
.+++.... .........+++-..|..++-++.. |+.+..+ .++..+.-...|..+|-.+.+.....+-.
T Consensus 166 tf~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSe---Wg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~ 242 (461)
T PF05694_consen 166 TFEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSE---WGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGE 242 (461)
T ss_dssp T--EEEE--SB-TT------EEEETTTTEEEE-B------HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-T
T ss_pred cccccceeccCCCCCCCCCCeEEcCCCCEEEEec---cCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecCC
Confidence 43332221 2222345677999999888888864 5544322 23333333457888998877776654322
Q ss_pred --CCcceEE--EecCCCEEEEEeCCCCeEEEEEec-CCCCcceeee-ec----------cC-------CCCCCceeeCCC
Q 022967 218 --FFANGVA--LSKDEDYLVVCETFKFRCLKYWLK-GESKEQTEIF-VE----------NL-------PGGPDNIKLAPD 274 (289)
Q Consensus 218 --~~p~gl~--~~~d~~~l~v~~~~~~~i~~~~~~-~~~~~~~~~~-~~----------~~-------~~~p~~i~~d~~ 274 (289)
..|-.+. .+|+..+-||...-+..|++|..+ +......++. +. .+ +.++..|.+.-|
T Consensus 243 ~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSlD 322 (461)
T PF05694_consen 243 EGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILISLD 322 (461)
T ss_dssp TEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE------EEE-TT
T ss_pred CCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceEeEEEccC
Confidence 2344444 456677788877778889988773 2221111110 00 11 456677666655
Q ss_pred C-CEEEEEeCccccCC
Q 022967 275 G-SFWIAILQVFISNQ 289 (289)
Q Consensus 275 G-~lwv~~~~g~i~~~ 289 (289)
. .|||+++.-|-.+|
T Consensus 323 DrfLYvs~W~~Gdvrq 338 (461)
T PF05694_consen 323 DRFLYVSNWLHGDVRQ 338 (461)
T ss_dssp S-EEEEEETTTTEEEE
T ss_pred CCEEEEEcccCCcEEE
Confidence 5 78999998776655
No 177
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=95.74 E-value=0.99 Score=37.63 Aligned_cols=148 Identities=16% Similarity=0.231 Sum_probs=79.7
Q ss_pred CcceEEEcc-CCCEE-EEecCCeEEEEe-cCCceEEeeeecCcCccCeEEcCCCc-EEEEeCCCceEEEeCCCeEEEEec
Q 022967 78 GPEDVCVDR-NGVLY-TATRDGWIKRLH-KNGTWENWKLIGGDTLLGITTTQENE-ILVCDADKGLLKVTEEGVTVLASH 153 (289)
Q Consensus 78 ~p~~l~~d~-~g~l~-v~~~~g~i~~~~-~~g~~~~~~~~~~~p~~gl~~d~~g~-l~v~~~~~~i~~~~~~g~~~~~~~ 153 (289)
..+.++.++ .-.++ ++..+..|.+++ ..++...-....+.-+ -+.+.++|. +.+.+....|..+|....++...
T Consensus 66 svdql~w~~~~~d~~atas~dk~ir~wd~r~~k~~~~i~~~~eni-~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~- 143 (313)
T KOG1407|consen 66 SVDQLCWDPKHPDLFATASGDKTIRIWDIRSGKCTARIETKGENI-NITWSPDGEYIAVGNKDDRITFIDARTYKIVNE- 143 (313)
T ss_pred chhhheeCCCCCcceEEecCCceEEEEEeccCcEEEEeeccCcce-EEEEcCCCCEEEEecCcccEEEEEecccceeeh-
Confidence 345577777 44555 666777888888 4555443333334444 577777775 44445445666666211111111
Q ss_pred cCCccccCccceEEcCCCcEEEeeCCCccCccccccccceecCCCE--EEEEeCCCCeEEEeeCCCCCcceEEEecCCCE
Q 022967 154 VNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGK--LLKYDPSLNETSILLDSLFFANGVALSKDEDY 231 (289)
Q Consensus 154 ~~~~~~~~~~~l~~~~dG~lyv~~~~~~~~~~~~~~~~~~~~~~g~--i~~~~~~~~~~~~~~~~~~~p~gl~~~~d~~~ 231 (289)
.......+.+.+..++.++|.+.+ .|. |+.| |.-+.+..+.....+..-|.|+|+|++
T Consensus 144 --~~~~~e~ne~~w~~~nd~Fflt~G-----------------lG~v~ILsy-psLkpv~si~AH~snCicI~f~p~Gry 203 (313)
T KOG1407|consen 144 --EQFKFEVNEISWNNSNDLFFLTNG-----------------LGCVEILSY-PSLKPVQSIKAHPSNCICIEFDPDGRY 203 (313)
T ss_pred --hcccceeeeeeecCCCCEEEEecC-----------------CceEEEEec-cccccccccccCCcceEEEEECCCCce
Confidence 011134567778777888877543 233 4455 221222222222334456789999996
Q ss_pred EEEEeCCCCeEEEEEec
Q 022967 232 LVVCETFKFRCLKYWLK 248 (289)
Q Consensus 232 l~v~~~~~~~i~~~~~~ 248 (289)
+-+. .....+..+|++
T Consensus 204 fA~G-sADAlvSLWD~~ 219 (313)
T KOG1407|consen 204 FATG-SADALVSLWDVD 219 (313)
T ss_pred Eeec-cccceeeccChh
Confidence 6555 333556666655
No 178
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=95.73 E-value=1 Score=37.81 Aligned_cols=165 Identities=15% Similarity=0.163 Sum_probs=93.4
Q ss_pred EEEEecCCeEEEEe---cC---CceEE-eeeecCcCccCeEEcCCCcEEEEeCCCceEE-Ee-CCC--eEEEEeccCCcc
Q 022967 90 LYTATRDGWIKRLH---KN---GTWEN-WKLIGGDTLLGITTTQENEILVCDADKGLLK-VT-EEG--VTVLASHVNGSR 158 (289)
Q Consensus 90 l~v~~~~g~i~~~~---~~---g~~~~-~~~~~~~p~~gl~~d~~g~l~v~~~~~~i~~-~~-~~g--~~~~~~~~~~~~ 158 (289)
++-++.+-.+..++ .| |...+ +........ +++..+||+..++....+..| .| ..| .+++....
T Consensus 31 l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~-dv~~s~dg~~alS~swD~~lrlWDl~~g~~t~~f~GH~---- 105 (315)
T KOG0279|consen 31 LVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVS-DVVLSSDGNFALSASWDGTLRLWDLATGESTRRFVGHT---- 105 (315)
T ss_pred EEEcccceEEEEEEeccCccccCceeeeeeccceEec-ceEEccCCceEEeccccceEEEEEecCCcEEEEEEecC----
Confidence 33455666676665 12 22222 222233444 888889999888876666554 56 666 44554321
Q ss_pred ccCccceEEcCCCcEEEeeCCCccCccccccccceecCCCEEEEEeCCCCeEEEeeCC--CCCcceEEEecCC-CEEEEE
Q 022967 159 INLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDS--LFFANGVALSKDE-DYLVVC 235 (289)
Q Consensus 159 ~~~~~~l~~~~dG~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~--~~~p~gl~~~~d~-~~l~v~ 235 (289)
.-..++++++|.+-.++... ...|..++..+.......++ -..-+-+.|+|.. +-.+++
T Consensus 106 -~dVlsva~s~dn~qivSGSr-----------------DkTiklwnt~g~ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs 167 (315)
T KOG0279|consen 106 -KDVLSVAFSTDNRQIVSGSR-----------------DKTIKLWNTLGVCKYTIHEDSHREWVSCVRFSPNESNPIIVS 167 (315)
T ss_pred -CceEEEEecCCCceeecCCC-----------------cceeeeeeecccEEEEEecCCCcCcEEEEEEcCCCCCcEEEE
Confidence 23568899999887776432 24566666654433333333 4566788999976 434455
Q ss_pred eCCCCeEEEEEecCCCCcceeeeeccCCCCCCceeeCCCCCEEEE
Q 022967 236 ETFKFRCLKYWLKGESKEQTEIFVENLPGGPDNIKLAPDGSFWIA 280 (289)
Q Consensus 236 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~lwv~ 280 (289)
......|..+|+++-.+.. .|. ...++..-+++..||.+-..
T Consensus 168 ~s~DktvKvWnl~~~~l~~--~~~-gh~~~v~t~~vSpDGslcas 209 (315)
T KOG0279|consen 168 ASWDKTVKVWNLRNCQLRT--TFI-GHSGYVNTVTVSPDGSLCAS 209 (315)
T ss_pred ccCCceEEEEccCCcchhh--ccc-cccccEEEEEECCCCCEEec
Confidence 5556677778876543321 222 22234455666666666544
No 179
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=95.60 E-value=2.1 Score=40.28 Aligned_cols=162 Identities=15% Similarity=0.066 Sum_probs=81.6
Q ss_pred EEEccCCCEEEEecCCeEEEEe-cCCceEEeeeecC----cCcc-CeEEcCCCcEEEEeC------CCceEEEe-CCC-e
Q 022967 82 VCVDRNGVLYTATRDGWIKRLH-KNGTWENWKLIGG----DTLL-GITTTQENEILVCDA------DKGLLKVT-EEG-V 147 (289)
Q Consensus 82 l~~d~~g~l~v~~~~g~i~~~~-~~g~~~~~~~~~~----~p~~-gl~~d~~g~l~v~~~------~~~i~~~~-~~g-~ 147 (289)
+++. ++++|+++.+++++.+| .+|+...-..... ...+ .-.+ .++.+|+... ...++.+| .+| .
T Consensus 116 ~av~-~~~v~v~t~dg~l~ALDa~TGk~~W~~~~~~~~~~~~~tssP~v-~~g~Vivg~~~~~~~~~G~v~AlD~~TG~~ 193 (527)
T TIGR03075 116 VALY-DGKVFFGTLDARLVALDAKTGKVVWSKKNGDYKAGYTITAAPLV-VKGKVITGISGGEFGVRGYVTAYDAKTGKL 193 (527)
T ss_pred ceEE-CCEEEEEcCCCEEEEEECCCCCEEeecccccccccccccCCcEE-ECCEEEEeecccccCCCcEEEEEECCCCce
Confidence 3443 57899999899999999 5787543221111 1110 1222 2567887643 13477788 677 3
Q ss_pred EEEEeccCCc----------------------------cccCccceEEcC-CCcEEEeeCCCccCcccccccccee--cC
Q 022967 148 TVLASHVNGS----------------------------RINLADDLIAAT-DGSIYFSVASTKFGLHNWGLDLLEA--KP 196 (289)
Q Consensus 148 ~~~~~~~~~~----------------------------~~~~~~~l~~~~-dG~lyv~~~~~~~~~~~~~~~~~~~--~~ 196 (289)
..-....+.. .-..-..+.+|+ .|.||+..+.- .+ +......+ ..
T Consensus 194 lW~~~~~p~~~~~~~~~~~~~~~~~~~~tw~~~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp---~p-~~~~~r~gdnl~ 269 (527)
T TIGR03075 194 VWRRYTVPGDMGYLDKADKPVGGEPGAKTWPGDAWKTGGGATWGTGSYDPETNLIYFGTGNP---SP-WNSHLRPGDNLY 269 (527)
T ss_pred eEeccCcCCCcccccccccccccccccCCCCCCccccCCCCccCceeEcCCCCeEEEeCCCC---CC-CCCCCCCCCCcc
Confidence 2221111100 001112468888 46799987531 00 11000001 12
Q ss_pred CCEEEEEeCCCCeEEEee----C---CC---CCcceEEEecCCC--EEEEEeCCCCeEEEEEecC
Q 022967 197 HGKLLKYDPSLNETSILL----D---SL---FFANGVALSKDED--YLVVCETFKFRCLKYWLKG 249 (289)
Q Consensus 197 ~g~i~~~~~~~~~~~~~~----~---~~---~~p~gl~~~~d~~--~l~v~~~~~~~i~~~~~~~ 249 (289)
...|+.+|.++|++.-.. . +. ..|.-+.+..+|+ .+++.-+.+..++.+|..+
T Consensus 270 ~~s~vAld~~TG~~~W~~Q~~~~D~wD~d~~~~p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~t 334 (527)
T TIGR03075 270 TSSIVARDPDTGKIKWHYQTTPHDEWDYDGVNEMILFDLKKDGKPRKLLAHADRNGFFYVLDRTN 334 (527)
T ss_pred ceeEEEEccccCCEEEeeeCCCCCCccccCCCCcEEEEeccCCcEEEEEEEeCCCceEEEEECCC
Confidence 347999999999875321 1 11 2222222324554 3555555666677777653
No 180
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=95.57 E-value=0.53 Score=39.87 Aligned_cols=65 Identities=20% Similarity=0.331 Sum_probs=45.1
Q ss_pred eEEEccCCCEEEEe-cCCeEEEEecCCceEEe---eeecCcCccCeEEcCCCcEEE-EeCCCceEEEe-CCC
Q 022967 81 DVCVDRNGVLYTAT-RDGWIKRLHKNGTWENW---KLIGGDTLLGITTTQENEILV-CDADKGLLKVT-EEG 146 (289)
Q Consensus 81 ~l~~d~~g~l~v~~-~~g~i~~~~~~g~~~~~---~~~~~~p~~gl~~d~~g~l~v-~~~~~~i~~~~-~~g 146 (289)
.+.++|+|..+++. .+..|+.|+..|..+.+ ....+..+ ++.+.+|++..+ +..+..++.+| ..|
T Consensus 52 ~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM-~l~~~~d~s~i~S~gtDk~v~~wD~~tG 122 (338)
T KOG0265|consen 52 TIKFHPDGSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVM-ELHGMRDGSHILSCGTDKTVRGWDAETG 122 (338)
T ss_pred EEEECCCCCeEeecCCcceEEEEeccccccceeeeccccceeE-eeeeccCCCEEEEecCCceEEEEecccc
Confidence 36788899988554 67788888855544333 23345567 888888887555 44557788899 667
No 181
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=95.45 E-value=1.5 Score=39.52 Aligned_cols=146 Identities=11% Similarity=0.066 Sum_probs=81.8
Q ss_pred CCcceEEEccCCCEE-EEecCCeEEEEecCCceEEeeeecCcCccCeEEcCCCcEEEE-eCCCceEEEe-CCC-eEEEEe
Q 022967 77 NGPEDVCVDRNGVLY-TATRDGWIKRLHKNGTWENWKLIGGDTLLGITTTQENEILVC-DADKGLLKVT-EEG-VTVLAS 152 (289)
Q Consensus 77 ~~p~~l~~d~~g~l~-v~~~~g~i~~~~~~g~~~~~~~~~~~p~~gl~~d~~g~l~v~-~~~~~i~~~~-~~g-~~~~~~ 152 (289)
..-.+++...+|.+. ++..+|.+..|+.+|...........|+..|.+.++|+..++ ..++.+..+| ..| ..+...
T Consensus 236 kdVT~L~Wn~~G~~LatG~~~G~~riw~~~G~l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q~f~ 315 (524)
T KOG0273|consen 236 KDVTSLDWNNDGTLLATGSEDGEARIWNKDGNLISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQQFE 315 (524)
T ss_pred CCcceEEecCCCCeEEEeecCcEEEEEecCchhhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceEEEeee
Confidence 456778888889887 677889888888888654333323344448888888875554 3335677778 667 443322
Q ss_pred ccCCccccCc-cceEEcCCCcEEEeeCCCccCccccccccceecCCCE--EEEEeCCCCeEEEeeCCCCCcceEEEecCC
Q 022967 153 HVNGSRINLA-DDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGK--LLKYDPSLNETSILLDSLFFANGVALSKDE 229 (289)
Q Consensus 153 ~~~~~~~~~~-~~l~~~~dG~lyv~~~~~~~~~~~~~~~~~~~~~~g~--i~~~~~~~~~~~~~~~~~~~p~gl~~~~d~ 229 (289)
-.. .+ .++.+-.+..+-.+. ..+. |++++.+ .-+..+...-.-.+.|.|+|.+
T Consensus 316 ~~s-----~~~lDVdW~~~~~F~ts~------------------td~~i~V~kv~~~-~P~~t~~GH~g~V~alk~n~tg 371 (524)
T KOG0273|consen 316 FHS-----APALDVDWQSNDEFATSS------------------TDGCIHVCKVGED-RPVKTFIGHHGEVNALKWNPTG 371 (524)
T ss_pred ecc-----CCccceEEecCceEeecC------------------CCceEEEEEecCC-CcceeeecccCceEEEEECCCC
Confidence 111 12 233333332222221 1233 4444443 2222333333445778888888
Q ss_pred CEEEEEeCCCCeEEEEEe
Q 022967 230 DYLVVCETFKFRCLKYWL 247 (289)
Q Consensus 230 ~~l~v~~~~~~~i~~~~~ 247 (289)
. |..+.+...++..|..
T Consensus 372 ~-LLaS~SdD~TlkiWs~ 388 (524)
T KOG0273|consen 372 S-LLASCSDDGTLKIWSM 388 (524)
T ss_pred c-eEEEecCCCeeEeeec
Confidence 7 6666666666666653
No 182
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=95.37 E-value=0.29 Score=44.42 Aligned_cols=153 Identities=13% Similarity=0.095 Sum_probs=85.5
Q ss_pred CCcceEEEccCCCEE-EEecCCeEEEEecCCc---eE-Ee--eeecCcCccCeEEcCCCcEEEEeCC-CceEEEeC---C
Q 022967 77 NGPEDVCVDRNGVLY-TATRDGWIKRLHKNGT---WE-NW--KLIGGDTLLGITTTQENEILVCDAD-KGLLKVTE---E 145 (289)
Q Consensus 77 ~~p~~l~~d~~g~l~-v~~~~g~i~~~~~~g~---~~-~~--~~~~~~p~~gl~~d~~g~l~v~~~~-~~i~~~~~---~ 145 (289)
..|...+++++|.+. .+..+|.|..|+..+. .. .+ +...+.-.+.|.|..||+.+.+-.. ..+-.+|- +
T Consensus 318 v~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~k 397 (641)
T KOG0772|consen 318 VPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQFK 397 (641)
T ss_pred cCceeeecCCCcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhccCCCceeeeeccccc
Confidence 357888999999987 5668999999984221 11 11 1222223348999999987776433 22333331 1
Q ss_pred C-eEEEEeccCCccccCccceEEcCCCcEEEeeCCCccCccccccccceecCCCEEEEEeCCCCeEEEeeC-C--CCCcc
Q 022967 146 G-VTVLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLD-S--LFFAN 221 (289)
Q Consensus 146 g-~~~~~~~~~~~~~~~~~~l~~~~dG~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~-~--~~~p~ 221 (289)
. +.+... .. .. .--.+.+|.||..|.++-.+...+ ...|.|+.||+.+ +..+.. . -....
T Consensus 398 kpL~~~tg-L~-t~-~~~tdc~FSPd~kli~TGtS~~~~-----------~~~g~L~f~d~~t--~d~v~ki~i~~aSvv 461 (641)
T KOG0772|consen 398 KPLNVRTG-LP-TP-FPGTDCCFSPDDKLILTGTSAPNG-----------MTAGTLFFFDRMT--LDTVYKIDISTASVV 461 (641)
T ss_pred cchhhhcC-CC-cc-CCCCccccCCCceEEEecccccCC-----------CCCceEEEEeccc--eeeEEEecCCCceEE
Confidence 2 221111 11 01 112367999999999987653322 2345688888753 333221 1 12224
Q ss_pred eEEEecCCCEEEEEeCCCCeEEEEE
Q 022967 222 GVALSKDEDYLVVCETFKFRCLKYW 246 (289)
Q Consensus 222 gl~~~~d~~~l~v~~~~~~~i~~~~ 246 (289)
.+.|+|.=+.++++ ++++.+.+|.
T Consensus 462 ~~~WhpkLNQi~~g-sgdG~~~vyY 485 (641)
T KOG0772|consen 462 RCLWHPKLNQIFAG-SGDGTAHVYY 485 (641)
T ss_pred EEeecchhhheeee-cCCCceEEEE
Confidence 45788866666666 4556666653
No 183
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=95.27 E-value=0.52 Score=41.31 Aligned_cols=142 Identities=11% Similarity=0.093 Sum_probs=80.9
Q ss_pred cCccCeEEcCCCcEEEEeCCCceEEE-e-CCCeEEEEeccCCccccCccceEEcCCCcEEEeeCCCccCcccccccccee
Q 022967 117 DTLLGITTTQENEILVCDADKGLLKV-T-EEGVTVLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEA 194 (289)
Q Consensus 117 ~p~~gl~~d~~g~l~v~~~~~~i~~~-~-~~g~~~~~~~~~~~~~~~~~~l~~~~dG~lyv~~~~~~~~~~~~~~~~~~~ 194 (289)
..+ .++|.++|...++..+..-+|+ | ......+. ..+ -.+....+++.|||....+..
T Consensus 117 ~Vl-~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~t--~Kg-H~~WVlcvawsPDgk~iASG~---------------- 176 (480)
T KOG0271|consen 117 AVL-SVQFSPTGSRLVTGSGDTTVRLWDLDTETPLFT--CKG-HKNWVLCVAWSPDGKKIASGS---------------- 176 (480)
T ss_pred cEE-EEEecCCCceEEecCCCceEEeeccCCCCccee--ecC-CccEEEEEEECCCcchhhccc----------------
Confidence 345 7889899988887665444443 4 22210000 111 124677899999998766533
Q ss_pred cCCCEEEEEeCCCCeEE--EeeCCCCCcceEEEec-----CCCEEEEEeCCCCeEEEEEecCCCCcceeeeeccCCCCCC
Q 022967 195 KPHGKLLKYDPSLNETS--ILLDSLFFANGVALSK-----DEDYLVVCETFKFRCLKYWLKGESKEQTEIFVENLPGGPD 267 (289)
Q Consensus 195 ~~~g~i~~~~~~~~~~~--~~~~~~~~p~gl~~~~-----d~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~ 267 (289)
..|.|..+||++|+-. .+...-....+++|-| ..+ .+.+.+..+.+.++|..... ..........-..
T Consensus 177 -~dg~I~lwdpktg~~~g~~l~gH~K~It~Lawep~hl~p~~r-~las~skDg~vrIWd~~~~~---~~~~lsgHT~~VT 251 (480)
T KOG0271|consen 177 -KDGSIRLWDPKTGQQIGRALRGHKKWITALAWEPLHLVPPCR-RLASSSKDGSVRIWDTKLGT---CVRTLSGHTASVT 251 (480)
T ss_pred -cCCeEEEecCCCCCcccccccCcccceeEEeecccccCCCcc-ceecccCCCCEEEEEccCce---EEEEeccCccceE
Confidence 3588999999877532 2333345567777765 344 66777778889988875431 1111111112233
Q ss_pred ceeeCCCCCEEEEEeC
Q 022967 268 NIKLAPDGSFWIAILQ 283 (289)
Q Consensus 268 ~i~~d~~G~lwv~~~~ 283 (289)
++.-..+|.||-+..+
T Consensus 252 CvrwGG~gliySgS~D 267 (480)
T KOG0271|consen 252 CVRWGGEGLIYSGSQD 267 (480)
T ss_pred EEEEcCCceEEecCCC
Confidence 4445555666655544
No 184
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=95.25 E-value=1.3 Score=41.65 Aligned_cols=101 Identities=13% Similarity=0.167 Sum_probs=55.7
Q ss_pred CeEEcCCCcEEEEeCCCceEEEeCCC--eEEEEeccCCccccCccceEEcCCCcEEEeeCCCccCccccccccceecCCC
Q 022967 121 GITTTQENEILVCDADKGLLKVTEEG--VTVLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHG 198 (289)
Q Consensus 121 gl~~d~~g~l~v~~~~~~i~~~~~~g--~~~~~~~~~~~~~~~~~~l~~~~dG~lyv~~~~~~~~~~~~~~~~~~~~~~g 198 (289)
.++.=+++ .|++.......++-..| ++.+... ....+++++-+++.+.=+.. .|
T Consensus 145 Av~~l~e~-~~vTgsaDKtIklWk~~~~l~tf~gH-----tD~VRgL~vl~~~~flScsN------------------Dg 200 (745)
T KOG0301|consen 145 AVASLPEN-TYVTGSADKTIKLWKGGTLLKTFSGH-----TDCVRGLAVLDDSHFLSCSN------------------DG 200 (745)
T ss_pred eeeecCCC-cEEeccCcceeeeccCCchhhhhccc-----hhheeeeEEecCCCeEeecC------------------Cc
Confidence 44444555 66765555555555334 4444221 12567888888765443321 35
Q ss_pred EEEEEeCCCCeEEEeeCCCCCcceEEEecCCCEEEEEeCCCCeEEEEE
Q 022967 199 KLLKYDPSLNETSILLDSLFFANGVALSKDEDYLVVCETFKFRCLKYW 246 (289)
Q Consensus 199 ~i~~~~~~~~~~~~~~~~~~~p~gl~~~~d~~~l~v~~~~~~~i~~~~ 246 (289)
.|.+.+.++..+..+...-.+-..+....+++ ++++....+.+..|+
T Consensus 201 ~Ir~w~~~ge~l~~~~ghtn~vYsis~~~~~~-~Ivs~gEDrtlriW~ 247 (745)
T KOG0301|consen 201 SIRLWDLDGEVLLEMHGHTNFVYSISMALSDG-LIVSTGEDRTLRIWK 247 (745)
T ss_pred eEEEEeccCceeeeeeccceEEEEEEecCCCC-eEEEecCCceEEEee
Confidence 67777776555555544444555566455555 677755555555554
No 185
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=95.18 E-value=0.28 Score=45.65 Aligned_cols=146 Identities=18% Similarity=0.153 Sum_probs=79.9
Q ss_pred ceEEEcc--CCCEEEEecCCeEEEEe--cCCce------EEeeeec-CcCccCeEEcCCC--cEEEEeCCCceEEEe-CC
Q 022967 80 EDVCVDR--NGVLYTATRDGWIKRLH--KNGTW------ENWKLIG-GDTLLGITTTQEN--EILVCDADKGLLKVT-EE 145 (289)
Q Consensus 80 ~~l~~d~--~g~l~v~~~~g~i~~~~--~~g~~------~~~~~~~-~~p~~gl~~d~~g--~l~v~~~~~~i~~~~-~~ 145 (289)
.++..|| +.+|-|++.+|+|..|. .+|-. +...... .... .|.|++-- -|.++..+..|-.+| .+
T Consensus 631 tDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~-slRfHPLAadvLa~asyd~Ti~lWDl~~ 709 (1012)
T KOG1445|consen 631 TDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEKIT-SLRFHPLAADVLAVASYDSTIELWDLAN 709 (1012)
T ss_pred eecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceeeecccceEE-EEEecchhhhHhhhhhccceeeeeehhh
Confidence 4466777 45788888888775555 44421 1111111 2233 66776422 233444334455556 44
Q ss_pred C--eEEEEeccCCccccCccceEEcCCCcEEEeeCCCccCccccccccceecCCCEEEEEeCCCCeEEEeeC-CCC--Cc
Q 022967 146 G--VTVLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLD-SLF--FA 220 (289)
Q Consensus 146 g--~~~~~~~~~~~~~~~~~~l~~~~dG~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~-~~~--~p 220 (289)
+ ...+... . ....++++.|||+...+... .|+|..|.|..++..+... +.. ..
T Consensus 710 ~~~~~~l~gH-t----dqIf~~AWSpdGr~~AtVcK-----------------Dg~~rVy~Prs~e~pv~Eg~gpvgtRg 767 (1012)
T KOG1445|consen 710 AKLYSRLVGH-T----DQIFGIAWSPDGRRIATVCK-----------------DGTLRVYEPRSREQPVYEGKGPVGTRG 767 (1012)
T ss_pred hhhhheeccC-c----CceeEEEECCCCcceeeeec-----------------CceEEEeCCCCCCCccccCCCCccCcc
Confidence 4 2223221 1 24679999999998776543 5889999998665433321 111 11
Q ss_pred ceEEEecCCCEEEEEeCC---CCeEEEEEec
Q 022967 221 NGVALSKDEDYLVVCETF---KFRCLKYWLK 248 (289)
Q Consensus 221 ~gl~~~~d~~~l~v~~~~---~~~i~~~~~~ 248 (289)
..|.|.-||+.++++... .++|..|+..
T Consensus 768 ARi~wacdgr~viv~Gfdk~SeRQv~~Y~Aq 798 (1012)
T KOG1445|consen 768 ARILWACDGRIVIVVGFDKSSERQVQMYDAQ 798 (1012)
T ss_pred eeEEEEecCcEEEEecccccchhhhhhhhhh
Confidence 235666678866666432 3456666643
No 186
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=95.06 E-value=1.8 Score=36.44 Aligned_cols=154 Identities=16% Similarity=0.111 Sum_probs=80.9
Q ss_pred CcceEEEccCCCEE--EE--ecCCeEEEEecCCceEEeeeecCcCccCeEEcCCCcEEEEeCCCceEEE--e-CCC-eEE
Q 022967 78 GPEDVCVDRNGVLY--TA--TRDGWIKRLHKNGTWENWKLIGGDTLLGITTTQENEILVCDADKGLLKV--T-EEG-VTV 149 (289)
Q Consensus 78 ~p~~l~~d~~g~l~--v~--~~~g~i~~~~~~g~~~~~~~~~~~p~~gl~~d~~g~l~v~~~~~~i~~~--~-~~g-~~~ 149 (289)
.+...++.++|..+ +. .....++....++....... ..... .-.+|.+|.+|+++......++ + .+| ...
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~~~~~~~-g~~l~-~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~~~ 102 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGPVRPVLT-GGSLT-RPSWDPDGWVWTVDDGSGGVRVVRDSASGTGEP 102 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCCCcceeecc-CCccc-cccccCCCCEEEEEcCCCceEEEEecCCCccee
Confidence 56777888888755 33 23345666655555444332 22233 6779999999999765443222 2 344 332
Q ss_pred EEeccCCccccCccceEEcCCC-cEEEeeCCCccCccccccccceecCCCEEEEE----eCCCC-e------EEEeeCCC
Q 022967 150 LASHVNGSRINLADDLIAATDG-SIYFSVASTKFGLHNWGLDLLEAKPHGKLLKY----DPSLN-E------TSILLDSL 217 (289)
Q Consensus 150 ~~~~~~~~~~~~~~~l~~~~dG-~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~----~~~~~-~------~~~~~~~~ 217 (289)
..-....... ....|.+++|| ++-+.... ...++|+.- +.+ + . .+......
T Consensus 103 ~~v~~~~~~~-~I~~l~vSpDG~RvA~v~~~---------------~~~~~v~va~V~r~~~-g~~~~l~~~~~~~~~~~ 165 (253)
T PF10647_consen 103 VEVDWPGLRG-RITALRVSPDGTRVAVVVED---------------GGGGRVYVAGVVRDGD-GVPRRLTGPRRVAPPLL 165 (253)
T ss_pred EEecccccCC-ceEEEEECCCCcEEEEEEec---------------CCCCeEEEEEEEeCCC-CCcceeccceEeccccc
Confidence 2111111110 56789999999 44433211 012344432 222 2 1 11111224
Q ss_pred CCcceEEEecCCCEEEEEeCCCCeEEE-EEecCC
Q 022967 218 FFANGVALSKDEDYLVVCETFKFRCLK-YWLKGE 250 (289)
Q Consensus 218 ~~p~gl~~~~d~~~l~v~~~~~~~i~~-~~~~~~ 250 (289)
.....++|..++..++++......+.. +..+|.
T Consensus 166 ~~v~~v~W~~~~~L~V~~~~~~~~~~~~v~~dG~ 199 (253)
T PF10647_consen 166 SDVTDVAWSDDSTLVVLGRSAGGPVVRLVSVDGG 199 (253)
T ss_pred CcceeeeecCCCEEEEEeCCCCCceeEEEEccCC
Confidence 456788999888855556555555655 555553
No 187
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=95.02 E-value=0.086 Score=30.52 Aligned_cols=42 Identities=12% Similarity=-0.005 Sum_probs=28.8
Q ss_pred cCCCEEEEEeCCCCeEEEEEecCCCCcceeeeeccCCCCCCceeeC
Q 022967 227 KDEDYLVVCETFKFRCLKYWLKGESKEQTEIFVENLPGGPDNIKLA 272 (289)
Q Consensus 227 ~d~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d 272 (289)
||+++||+++...+.|..+|...... .. .+ .....|.+++++
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~~~--~~-~i-~vg~~P~~i~~~ 42 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATNKV--IA-TI-PVGGYPFGVAVS 42 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCeE--EE-EE-ECCCCCceEEeC
Confidence 57889999999999999998754321 11 22 223568887764
No 188
>PF00058 Ldl_recept_b: Low-density lipoprotein receptor repeat class B; InterPro: IPR000033 The low-density lipoprotein receptor (LDLR) is the major cholesterol-carrying lipoprotein of plasma, acting to regulate cholesterol homeostasis in mammalian cells. The LDL receptor binds LDL and transports it into cells by acidic endocytosis. In order to be internalized, the receptor-ligand complex must first cluster into clathrin-coated pits. Once inside the cell, the LDLR separates from its ligand, which is degraded in the lysosomes, while the receptor returns to the cell surface []. The internal dissociation of the LDLR with its ligand is mediated by proton pumps within the walls of the endosome that lower the pH. The LDLR is a multi-domain protein, containing: The ligand-binding domain contains seven or eight 40-amino acid LDLR class A (cysteine-rich) repeats, each of which contains a coordinated calcium ion and six cysteine residues involved in disulphide bond formation []. Similar domains have been found in other extracellular and membrane proteins []. The second conserved region contains two EGF repeats, followed by six LDLR class B (YWTD) repeats, and another EGF repeat. The LDLR class B repeats each contain a conserved YWTD motif, and is predicted to form a beta-propeller structure []. This region is critical for ligand release and recycling of the receptor []. The third domain is rich in serine and threonine residues and contains clustered O-linked carbohydrate chains. The fourth domain is the hydrophobic transmembrane region. The fifth domain is the cytoplasmic tail that directs the receptor to clathrin-coated pits. LDLR is closely related in structure to several other receptors, including LRP1, LRP1b, megalin/LRP2, VLDL receptor, lipoprotein receptor, MEGF7/LRP4, and LRP8/apolipoprotein E receptor2); these proteins participate in a wide range of physiological processes, including the regulation of lipid metabolism, protection against atherosclerosis, neurodevelopment, and transport of nutrients and vitamins []. This entry represents the LDLR classB (YWTD) repeat, the structure of which has been solved []. The six YWTD repeats together fold into a six-bladed beta-propeller. Each blade of the propeller consists of four antiparallel beta-strands; the innermost strand of each blade is labeled 1 and the outermost strand, 4. The sequence repeats are offset with respect to the blades of the propeller, such that any given 40-residue YWTD repeat spans strands 24 of one propeller blade and strand 1 of the subsequent blade. This offset ensures circularization of the propeller because the last strand of the final sequence repeat acts as an innermost strand 1 of the blade that harbors strands 24 from the first sequence repeat. The repeat is found in a variety of proteins that include, vitellogenin receptor from Drosophila melanogaster, low-density lipoprotein (LDL) receptor [], preproepidermal growth factor, and nidogen (entactin).; PDB: 3S2K_A 3S8Z_A 3S8V_B 4A0P_A 3SOB_B 3S94_B 4DG6_A 3SOV_A 3SOQ_A 1NPE_A ....
Probab=95.01 E-value=0.16 Score=29.73 Aligned_cols=40 Identities=20% Similarity=0.343 Sum_probs=30.6
Q ss_pred CcEEEeeCCCccCccccccccceecCCC-EEEEEeCCCCeEE-EeeCCCCCcceEEEec
Q 022967 171 GSIYFSVASTKFGLHNWGLDLLEAKPHG-KLLKYDPSLNETS-ILLDSLFFANGVALSK 227 (289)
Q Consensus 171 G~lyv~~~~~~~~~~~~~~~~~~~~~~g-~i~~~~~~~~~~~-~~~~~~~~p~gl~~~~ 227 (289)
++||++|.. .. .|.+.+.++...+ .+...+..|.||++++
T Consensus 1 ~~iYWtD~~-----------------~~~~I~~a~~dGs~~~~vi~~~l~~P~giaVD~ 42 (42)
T PF00058_consen 1 GKIYWTDWS-----------------QDPSIERANLDGSNRRTVISDDLQHPEGIAVDW 42 (42)
T ss_dssp TEEEEEETT-----------------TTEEEEEEETTSTSEEEEEESSTSSEEEEEEET
T ss_pred CEEEEEECC-----------------CCcEEEEEECCCCCeEEEEECCCCCcCEEEECC
Confidence 579999976 24 7888888876644 4467799999999874
No 189
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=94.96 E-value=2.3 Score=37.16 Aligned_cols=167 Identities=12% Similarity=0.076 Sum_probs=90.2
Q ss_pred cCCcceEEEcc--CCCEEEEecCCeEEEEe--cCCceEEeeeec----CcCcc--CeEEcCCCcEEEEeCCCceEEEe-C
Q 022967 76 LNGPEDVCVDR--NGVLYTATRDGWIKRLH--KNGTWENWKLIG----GDTLL--GITTTQENEILVCDADKGLLKVT-E 144 (289)
Q Consensus 76 ~~~p~~l~~d~--~g~l~v~~~~g~i~~~~--~~g~~~~~~~~~----~~p~~--gl~~d~~g~l~v~~~~~~i~~~~-~ 144 (289)
+.-|-|..+=| +.+++.-+.+|++..+. .+|+........ ..|.. ......++.+|+......++.++ .
T Consensus 134 i~~PGC~~iyP~~~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dls 213 (342)
T PF06433_consen 134 IDTPGCWLIYPSGNRGFSMLCGDGSLLTVTLDADGKEAQKSTKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLS 213 (342)
T ss_dssp EEGTSEEEEEEEETTEEEEEETTSCEEEEEETSTSSEEEEEEEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEET
T ss_pred ecCCCEEEEEecCCCceEEEecCCceEEEEECCCCCEeEeeccccCCCCcccccccceECCCCeEEEEecCCEEEEEecc
Confidence 45566654444 45666778999998776 577654322111 12210 11122345677766555688888 3
Q ss_pred CC-eEEEEec--c------CCccccCccceEEcC-CCcEEEeeCCCccCccccccccceecCCCEEEEEeCCCCeEEEee
Q 022967 145 EG-VTVLASH--V------NGSRINLADDLIAAT-DGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILL 214 (289)
Q Consensus 145 ~g-~~~~~~~--~------~~~~~~~~~~l~~~~-dG~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~ 214 (289)
.. .+..... . .+-+-..-.-+++.+ .++||+.-.. +. .+.+. .+.-.||.+|.++++...-.
T Consensus 214 g~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~---g~-~gsHK----dpgteVWv~D~~t~krv~Ri 285 (342)
T PF06433_consen 214 GDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQ---GG-EGSHK----DPGTEVWVYDLKTHKRVARI 285 (342)
T ss_dssp TSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE------TT-TT----S-EEEEEEEETTTTEEEEEE
T ss_pred CCcccccCcccccCccccccCcCCcceeeeeeccccCeEEEEecC---CC-CCCcc----CCceEEEEEECCCCeEEEEE
Confidence 32 3322211 0 111112334578875 6789985321 10 01110 12236999999987654332
Q ss_pred CCCCCcceEEEecCCC-EEEEEeCCCCeEEEEEecCC
Q 022967 215 DSLFFANGVALSKDED-YLVVCETFKFRCLKYWLKGE 250 (289)
Q Consensus 215 ~~~~~p~gl~~~~d~~-~l~v~~~~~~~i~~~~~~~~ 250 (289)
.......+|+++.|.+ .||..+.....|.+||..+.
T Consensus 286 ~l~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tG 322 (342)
T PF06433_consen 286 PLEHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATG 322 (342)
T ss_dssp EEEEEESEEEEESSSS-EEEEEETTTTEEEEEETTT-
T ss_pred eCCCccceEEEccCCCcEEEEEcCCCCeEEEEeCcCC
Confidence 2222345899998887 66667777789999997653
No 190
>PF00058 Ldl_recept_b: Low-density lipoprotein receptor repeat class B; InterPro: IPR000033 The low-density lipoprotein receptor (LDLR) is the major cholesterol-carrying lipoprotein of plasma, acting to regulate cholesterol homeostasis in mammalian cells. The LDL receptor binds LDL and transports it into cells by acidic endocytosis. In order to be internalized, the receptor-ligand complex must first cluster into clathrin-coated pits. Once inside the cell, the LDLR separates from its ligand, which is degraded in the lysosomes, while the receptor returns to the cell surface []. The internal dissociation of the LDLR with its ligand is mediated by proton pumps within the walls of the endosome that lower the pH. The LDLR is a multi-domain protein, containing: The ligand-binding domain contains seven or eight 40-amino acid LDLR class A (cysteine-rich) repeats, each of which contains a coordinated calcium ion and six cysteine residues involved in disulphide bond formation []. Similar domains have been found in other extracellular and membrane proteins []. The second conserved region contains two EGF repeats, followed by six LDLR class B (YWTD) repeats, and another EGF repeat. The LDLR class B repeats each contain a conserved YWTD motif, and is predicted to form a beta-propeller structure []. This region is critical for ligand release and recycling of the receptor []. The third domain is rich in serine and threonine residues and contains clustered O-linked carbohydrate chains. The fourth domain is the hydrophobic transmembrane region. The fifth domain is the cytoplasmic tail that directs the receptor to clathrin-coated pits. LDLR is closely related in structure to several other receptors, including LRP1, LRP1b, megalin/LRP2, VLDL receptor, lipoprotein receptor, MEGF7/LRP4, and LRP8/apolipoprotein E receptor2); these proteins participate in a wide range of physiological processes, including the regulation of lipid metabolism, protection against atherosclerosis, neurodevelopment, and transport of nutrients and vitamins []. This entry represents the LDLR classB (YWTD) repeat, the structure of which has been solved []. The six YWTD repeats together fold into a six-bladed beta-propeller. Each blade of the propeller consists of four antiparallel beta-strands; the innermost strand of each blade is labeled 1 and the outermost strand, 4. The sequence repeats are offset with respect to the blades of the propeller, such that any given 40-residue YWTD repeat spans strands 24 of one propeller blade and strand 1 of the subsequent blade. This offset ensures circularization of the propeller because the last strand of the final sequence repeat acts as an innermost strand 1 of the blade that harbors strands 24 from the first sequence repeat. The repeat is found in a variety of proteins that include, vitellogenin receptor from Drosophila melanogaster, low-density lipoprotein (LDL) receptor [], preproepidermal growth factor, and nidogen (entactin).; PDB: 3S2K_A 3S8Z_A 3S8V_B 4A0P_A 3SOB_B 3S94_B 4DG6_A 3SOV_A 3SOQ_A 1NPE_A ....
Probab=94.91 E-value=0.095 Score=30.73 Aligned_cols=40 Identities=10% Similarity=0.021 Sum_probs=29.7
Q ss_pred EEEEEeCCCC-eEEEEEecCCCCcceeeeeccCCCCCCceeeCC
Q 022967 231 YLVVCETFKF-RCLKYWLKGESKEQTEIFVENLPGGPDNIKLAP 273 (289)
Q Consensus 231 ~l~v~~~~~~-~i~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~ 273 (289)
.||++|...+ .|.+-+++|.. .+..+...-..|.+|++|.
T Consensus 2 ~iYWtD~~~~~~I~~a~~dGs~---~~~vi~~~l~~P~giaVD~ 42 (42)
T PF00058_consen 2 KIYWTDWSQDPSIERANLDGSN---RRTVISDDLQHPEGIAVDW 42 (42)
T ss_dssp EEEEEETTTTEEEEEEETTSTS---EEEEEESSTSSEEEEEEET
T ss_pred EEEEEECCCCcEEEEEECCCCC---eEEEEECCCCCcCEEEECC
Confidence 5999999999 99999988853 3333333335799999983
No 191
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=94.86 E-value=1.6 Score=41.40 Aligned_cols=147 Identities=12% Similarity=0.120 Sum_probs=86.1
Q ss_pred EEEccCCCEEEEecCCeEEEEe-cCCceE-Eeee-ecCcCccCeEEcCCCcEEEEeCCCceEEEe--CCC--eEEEEecc
Q 022967 82 VCVDRNGVLYTATRDGWIKRLH-KNGTWE-NWKL-IGGDTLLGITTTQENEILVCDADKGLLKVT--EEG--VTVLASHV 154 (289)
Q Consensus 82 l~~d~~g~l~v~~~~g~i~~~~-~~g~~~-~~~~-~~~~p~~gl~~d~~g~l~v~~~~~~i~~~~--~~g--~~~~~~~~ 154 (289)
++++++|...+....++|..++ .+|+.. .+.. ......+.+++++|+.+.++....++.++- +.| ++......
T Consensus 25 ~~~s~nG~~L~t~~~d~Vi~idv~t~~~~l~s~~~ed~d~ita~~l~~d~~~L~~a~rs~llrv~~L~tgk~irswKa~H 104 (775)
T KOG0319|consen 25 VAWSSNGQHLYTACGDRVIIIDVATGSIALPSGSNEDEDEITALALTPDEEVLVTASRSQLLRVWSLPTGKLIRSWKAIH 104 (775)
T ss_pred eeECCCCCEEEEecCceEEEEEccCCceecccCCccchhhhheeeecCCccEEEEeeccceEEEEEcccchHhHhHhhcc
Confidence 8999999876555566788887 666653 1111 112223378888888655554445555543 556 33221111
Q ss_pred CCccccCccceEEcCCCcEEEeeCCCccCccccccccceecCCCEEEEEeCCCCeEEEeeCCCCCc-ceEEEecCCC-EE
Q 022967 155 NGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFA-NGVALSKDED-YL 232 (289)
Q Consensus 155 ~~~~~~~~~~l~~~~dG~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~p-~gl~~~~d~~-~l 232 (289)
.+ -...++++|-|.+.-+ ++ ..+.+..+|-+.+..+....+...+ ..+.|+|+-. ++
T Consensus 105 e~----Pvi~ma~~~~g~LlAt-gg----------------aD~~v~VWdi~~~~~th~fkG~gGvVssl~F~~~~~~~l 163 (775)
T KOG0319|consen 105 EA----PVITMAFDPTGTLLAT-GG----------------ADGRVKVWDIKNGYCTHSFKGHGGVVSSLLFHPHWNRWL 163 (775)
T ss_pred CC----CeEEEEEcCCCceEEe-cc----------------ccceEEEEEeeCCEEEEEecCCCceEEEEEeCCccchhh
Confidence 11 1347899998865444 32 2466666676666666555554444 5567887554 34
Q ss_pred EEEeCCCCeEEEEEecC
Q 022967 233 VVCETFKFRCLKYWLKG 249 (289)
Q Consensus 233 ~v~~~~~~~i~~~~~~~ 249 (289)
.++......++.||+..
T Consensus 164 L~sg~~D~~v~vwnl~~ 180 (775)
T KOG0319|consen 164 LASGATDGTVRVWNLND 180 (775)
T ss_pred eeecCCCceEEEEEccc
Confidence 45555568899999874
No 192
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=94.82 E-value=0.59 Score=41.37 Aligned_cols=147 Identities=14% Similarity=0.113 Sum_probs=82.0
Q ss_pred eEEEccCCCEEEEe-cCCeEEEEe-cCCce-EEeeeecCcCccCeEEcCCCcEEEEe-CCCceEEEeCCC-e-EEEEecc
Q 022967 81 DVCVDRNGVLYTAT-RDGWIKRLH-KNGTW-ENWKLIGGDTLLGITTTQENEILVCD-ADKGLLKVTEEG-V-TVLASHV 154 (289)
Q Consensus 81 ~l~~d~~g~l~v~~-~~g~i~~~~-~~g~~-~~~~~~~~~p~~gl~~d~~g~l~v~~-~~~~i~~~~~~g-~-~~~~~~~ 154 (289)
.+.+.||.+-.+++ .+.-+..+| ..|.. ..+..+.+...+..++-+||.=+|+. ....++.++.+| + ...
T Consensus 274 yi~wSPDdryLlaCg~~e~~~lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn~~~~W---- 349 (519)
T KOG0293|consen 274 YIMWSPDDRYLLACGFDEVLSLWDVDTGDLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDGNILGNW---- 349 (519)
T ss_pred EEEECCCCCeEEecCchHheeeccCCcchhhhhcccCcCCCcceeEEccCCceeEecCCCCcEEEecCCcchhhcc----
Confidence 35666766655555 233355666 34432 22333323332278888998655554 346688888666 3 211
Q ss_pred CCccccCccceEEcCCCc-EEEeeCCCccCccccccccceecCCCEEEEEeCCCCeEEEeeCCCCCcceEEEecCCCEEE
Q 022967 155 NGSRINLADDLIAATDGS-IYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANGVALSKDEDYLV 233 (289)
Q Consensus 155 ~~~~~~~~~~l~~~~dG~-lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~p~gl~~~~d~~~l~ 233 (289)
.+-+.....++++.+||. ++..... -.+..|+..+..-..+...-.....+.++.|++ +.
T Consensus 350 ~gvr~~~v~dlait~Dgk~vl~v~~d------------------~~i~l~~~e~~~dr~lise~~~its~~iS~d~k-~~ 410 (519)
T KOG0293|consen 350 EGVRDPKVHDLAITYDGKYVLLVTVD------------------KKIRLYNREARVDRGLISEEQPITSFSISKDGK-LA 410 (519)
T ss_pred cccccceeEEEEEcCCCcEEEEEecc------------------cceeeechhhhhhhccccccCceeEEEEcCCCc-EE
Confidence 111223467999999996 4443321 245555543221111222233346678999999 55
Q ss_pred EEeCCCCeEEEEEecCC
Q 022967 234 VCETFKFRCLKYWLKGE 250 (289)
Q Consensus 234 v~~~~~~~i~~~~~~~~ 250 (289)
..+...+.+.-||+...
T Consensus 411 LvnL~~qei~LWDl~e~ 427 (519)
T KOG0293|consen 411 LVNLQDQEIHLWDLEEN 427 (519)
T ss_pred EEEcccCeeEEeecchh
Confidence 66677799999998754
No 193
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=94.76 E-value=0.67 Score=39.76 Aligned_cols=147 Identities=11% Similarity=0.031 Sum_probs=82.5
Q ss_pred EEccCCCEE-EEecCCeEEEEe-cCCceEEeee------ecCcCccCeEEcCCCcEEEEeCCCceEEEe--CCC--eEEE
Q 022967 83 CVDRNGVLY-TATRDGWIKRLH-KNGTWENWKL------IGGDTLLGITTTQENEILVCDADKGLLKVT--EEG--VTVL 150 (289)
Q Consensus 83 ~~d~~g~l~-v~~~~g~i~~~~-~~g~~~~~~~------~~~~p~~gl~~d~~g~l~v~~~~~~i~~~~--~~g--~~~~ 150 (289)
..+|+-++| ++..+.-|..++ -+|+...... .-...+ .+.|.+||.-.++...+.|..++ .-| ..+.
T Consensus 118 s~qP~t~l~a~ssr~~PIh~wdaftG~lraSy~~ydh~de~taAh-sL~Fs~DGeqlfaGykrcirvFdt~RpGr~c~vy 196 (406)
T KOG2919|consen 118 SDQPSTNLFAVSSRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAH-SLQFSPDGEQLFAGYKRCIRVFDTSRPGRDCPVY 196 (406)
T ss_pred cCCCccceeeeccccCceeeeeccccccccchhhhhhHHhhhhhe-eEEecCCCCeEeecccceEEEeeccCCCCCCcch
Confidence 335567788 444677788888 5776553211 112456 89999999866666556666677 234 2222
Q ss_pred EeccCC-c-cccCccceEEcCC-C-cEEEeeCCCccCccccccccceecCCCEEEEEeCCCCeEEEeeC-CCCCcceEEE
Q 022967 151 ASHVNG-S-RINLADDLIAATD-G-SIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLD-SLFFANGVAL 225 (289)
Q Consensus 151 ~~~~~~-~-~~~~~~~l~~~~d-G-~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~-~~~~p~gl~~ 225 (289)
.....+ . .......+++.|- - .+-+..... +-+|+.-+ +++.-.+.. ......-+.|
T Consensus 197 ~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q----------------~~giy~~~--~~~pl~llggh~gGvThL~~ 258 (406)
T KOG2919|consen 197 TTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQ----------------RVGIYNDD--GRRPLQLLGGHGGGVTHLQW 258 (406)
T ss_pred hhhhcccccccceeeeeeccCCCCcceeeecccc----------------eeeeEecC--CCCceeeecccCCCeeeEEe
Confidence 111111 1 1123445677763 2 333333221 12344433 233322222 2233455688
Q ss_pred ecCCCEEEEEeCCCCeEEEEEec
Q 022967 226 SKDEDYLVVCETFKFRCLKYWLK 248 (289)
Q Consensus 226 ~~d~~~l~v~~~~~~~i~~~~~~ 248 (289)
.+||+.||...+....|.+||+.
T Consensus 259 ~edGn~lfsGaRk~dkIl~WDiR 281 (406)
T KOG2919|consen 259 CEDGNKLFSGARKDDKILCWDIR 281 (406)
T ss_pred ccCcCeecccccCCCeEEEEeeh
Confidence 99999999998888999999975
No 194
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=94.74 E-value=2.7 Score=40.27 Aligned_cols=144 Identities=13% Similarity=0.096 Sum_probs=81.5
Q ss_pred EEEccCCCEEEEecCCeEEEEecC--CceEEeeeecCcCccCeEEcC-CCcEEEEeCCCc-eEEEe-CCC-eEEEEeccC
Q 022967 82 VCVDRNGVLYTATRDGWIKRLHKN--GTWENWKLIGGDTLLGITTTQ-ENEILVCDADKG-LLKVT-EEG-VTVLASHVN 155 (289)
Q Consensus 82 l~~d~~g~l~v~~~~g~i~~~~~~--g~~~~~~~~~~~p~~gl~~d~-~g~l~v~~~~~~-i~~~~-~~g-~~~~~~~~~ 155 (289)
|....++.|..+.-|..|..|++. .-+..|.. ..... .++|.| |.+.+++..-.+ +..++ .+. +... .+..
T Consensus 375 lSWSKn~fLLSSSMDKTVRLWh~~~~~CL~~F~H-ndfVT-cVaFnPvDDryFiSGSLD~KvRiWsI~d~~Vv~W-~Dl~ 451 (712)
T KOG0283|consen 375 LSWSKNNFLLSSSMDKTVRLWHPGRKECLKVFSH-NDFVT-CVAFNPVDDRYFISGSLDGKVRLWSISDKKVVDW-NDLR 451 (712)
T ss_pred cccccCCeeEeccccccEEeecCCCcceeeEEec-CCeeE-EEEecccCCCcEeecccccceEEeecCcCeeEee-hhhh
Confidence 555556667766677777777642 22344432 33444 899986 456777643333 33333 333 2211 1111
Q ss_pred CccccCccceEEcCCCcEEEeeCCCccCccccccccceecCCCEEEEEeCCCCeEEEe----eCC-----CCCcceEEEe
Q 022967 156 GSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSIL----LDS-----LFFANGVALS 226 (289)
Q Consensus 156 ~~~~~~~~~l~~~~dG~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~----~~~-----~~~p~gl~~~ 226 (289)
..+..++..|||...|.-. .+|.+..|+..+.++..- ... .....|+.+.
T Consensus 452 ----~lITAvcy~PdGk~avIGt-----------------~~G~C~fY~t~~lk~~~~~~I~~~~~Kk~~~~rITG~Q~~ 510 (712)
T KOG0283|consen 452 ----DLITAVCYSPDGKGAVIGT-----------------FNGYCRFYDTEGLKLVSDFHIRLHNKKKKQGKRITGLQFF 510 (712)
T ss_pred ----hhheeEEeccCCceEEEEE-----------------eccEEEEEEccCCeEEEeeeEeeccCccccCceeeeeEec
Confidence 3567899999996444322 247777888765544321 110 1245788887
Q ss_pred c-CCCEEEEEeCCCCeEEEEEecCC
Q 022967 227 K-DEDYLVVCETFKFRCLKYWLKGE 250 (289)
Q Consensus 227 ~-d~~~l~v~~~~~~~i~~~~~~~~ 250 (289)
| +-+.+.|+ +...+|++||....
T Consensus 511 p~~~~~vLVT-SnDSrIRI~d~~~~ 534 (712)
T KOG0283|consen 511 PGDPDEVLVT-SNDSRIRIYDGRDK 534 (712)
T ss_pred CCCCCeEEEe-cCCCceEEEeccch
Confidence 6 33357777 56799999997433
No 195
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=94.72 E-value=2.8 Score=37.06 Aligned_cols=142 Identities=14% Similarity=0.220 Sum_probs=78.8
Q ss_pred eEEcCCCc-EEEE--eCCC---ceEEEe-CCC-eEEEEeccCCccccCccceEEc-CCC--cEEEeeCCCccCccccccc
Q 022967 122 ITTTQENE-ILVC--DADK---GLLKVT-EEG-VTVLASHVNGSRINLADDLIAA-TDG--SIYFSVASTKFGLHNWGLD 190 (289)
Q Consensus 122 l~~d~~g~-l~v~--~~~~---~i~~~~-~~g-~~~~~~~~~~~~~~~~~~l~~~-~dG--~lyv~~~~~~~~~~~~~~~ 190 (289)
+.+.+++. |++. ++.+ .++.+| ..| .+.+.......=......+.+- +++ .+|++...
T Consensus 189 v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~----------- 257 (353)
T PF00930_consen 189 VGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYDPPHFLGPDGNEFLWISERD----------- 257 (353)
T ss_dssp EEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSSEEEE-TTTSSEEEEEEETT-----------
T ss_pred ceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEecCCcceeeecccccccCCCCEEEEEEEcC-----------
Confidence 34445555 6654 2222 255556 456 5444433222222223344443 444 35555421
Q ss_pred cceecCCCEEEEEeCCCCeEEEeeCCCCCc-ceEEEecCCCEEEEEeCC----CCeEEEEEec-CCCCcceeeeeccCCC
Q 022967 191 LLEAKPHGKLLKYDPSLNETSILLDSLFFA-NGVALSKDEDYLVVCETF----KFRCLKYWLK-GESKEQTEIFVENLPG 264 (289)
Q Consensus 191 ~~~~~~~g~i~~~~~~~~~~~~~~~~~~~p-~gl~~~~d~~~l~v~~~~----~~~i~~~~~~-~~~~~~~~~~~~~~~~ 264 (289)
+-..|+.++.+++..+.+..+-... .-+.++++++.+|+.... .+.|++.+++ +.. .+.+. .. .
T Consensus 258 -----G~~hly~~~~~~~~~~~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~~~---~~~LT-~~-~ 327 (353)
T PF00930_consen 258 -----GYRHLYLYDLDGGKPRQLTSGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSGGE---PKCLT-CE-D 327 (353)
T ss_dssp -----SSEEEEEEETTSSEEEESS-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTETTE---EEESS-TT-S
T ss_pred -----CCcEEEEEcccccceeccccCceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCCCC---eEecc-CC-C
Confidence 3457999999987766655444333 346789999999988764 4578998877 432 22222 21 1
Q ss_pred CCC-ceeeCCCCCEEEEEeCc
Q 022967 265 GPD-NIKLAPDGSFWIAILQV 284 (289)
Q Consensus 265 ~p~-~i~~d~~G~lwv~~~~g 284 (289)
... .+.+.++|.++|-+.++
T Consensus 328 ~~~~~~~~Spdg~y~v~~~s~ 348 (353)
T PF00930_consen 328 GDHYSASFSPDGKYYVDTYSG 348 (353)
T ss_dssp STTEEEEE-TTSSEEEEEEES
T ss_pred CCceEEEECCCCCEEEEEEcC
Confidence 233 68899999988877653
No 196
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=94.70 E-value=0.43 Score=40.85 Aligned_cols=107 Identities=14% Similarity=0.268 Sum_probs=58.4
Q ss_pred CeEEcCCCcEEEEeCCCceEEEe--CCC--eEEEEeccCCccccCccceEEcCCCcEEEeeCCCccCccccccccceecC
Q 022967 121 GITTTQENEILVCDADKGLLKVT--EEG--VTVLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKP 196 (289)
Q Consensus 121 gl~~d~~g~l~v~~~~~~i~~~~--~~g--~~~~~~~~~~~~~~~~~~l~~~~dG~lyv~~~~~~~~~~~~~~~~~~~~~ 196 (289)
.+.|..|+.-..+.......|+. ++| ++.+-.. -...+...+.+||+-.++..+
T Consensus 311 ~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKEfrGH-----sSyvn~a~ft~dG~~iisaSs----------------- 368 (508)
T KOG0275|consen 311 CLSFSRDNSQILSASFDQTVRIHGLKSGKCLKEFRGH-----SSYVNEATFTDDGHHIISASS----------------- 368 (508)
T ss_pred EEEEccCcchhhcccccceEEEeccccchhHHHhcCc-----cccccceEEcCCCCeEEEecC-----------------
Confidence 67787777543443334566776 455 3332111 135678889999987776544
Q ss_pred CCEEEEEeCCCCeEEE-ee--CCCCCcceEEEec-CCCEEEEEeCCCCeEEEEEecCC
Q 022967 197 HGKLLKYDPSLNETSI-LL--DSLFFANGVALSK-DEDYLVVCETFKFRCLKYWLKGE 250 (289)
Q Consensus 197 ~g~i~~~~~~~~~~~~-~~--~~~~~p~gl~~~~-d~~~l~v~~~~~~~i~~~~~~~~ 250 (289)
.|.+-.++.++.+... +. ......|.+.+-| .-.++.|++. .+.|++.++.|.
T Consensus 369 DgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNr-sntv~imn~qGQ 425 (508)
T KOG0275|consen 369 DGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNR-SNTVYIMNMQGQ 425 (508)
T ss_pred CccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcC-CCeEEEEeccce
Confidence 3556666655443211 11 1112234444444 3445666654 478888887764
No 197
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=94.68 E-value=4.1 Score=38.65 Aligned_cols=56 Identities=9% Similarity=0.096 Sum_probs=35.1
Q ss_pred CcceEEEccCCCEEEEecCCeEEEEe-cCCceE-EeeeecCcCccCeEEcCCCcEEEEe
Q 022967 78 GPEDVCVDRNGVLYTATRDGWIKRLH-KNGTWE-NWKLIGGDTLLGITTTQENEILVCD 134 (289)
Q Consensus 78 ~p~~l~~d~~g~l~v~~~~g~i~~~~-~~g~~~-~~~~~~~~p~~gl~~d~~g~l~v~~ 134 (289)
--.++++.|||.=.+-..+++++.+| .+|... .+...-.... -+++..||+.+.+.
T Consensus 14 ci~d~afkPDGsqL~lAAg~rlliyD~ndG~llqtLKgHKDtVy-cVAys~dGkrFASG 71 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAAGSRLLVYDTSDGTLLQPLKGHKDTVY-CVAYAKDGKRFASG 71 (1081)
T ss_pred chheeEECCCCceEEEecCCEEEEEeCCCcccccccccccceEE-EEEEccCCceeccC
Confidence 45668999999766555677899999 466432 2222222334 66777777776654
No 198
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=94.53 E-value=1.1 Score=43.73 Aligned_cols=150 Identities=15% Similarity=0.217 Sum_probs=82.7
Q ss_pred CCcceEEEcc-CCCEEEEe--cCCeEEEEe-cCCce-EEeeeecCcCccCeEEc------CCCcEEEEeCCCceEEEeC-
Q 022967 77 NGPEDVCVDR-NGVLYTAT--RDGWIKRLH-KNGTW-ENWKLIGGDTLLGITTT------QENEILVCDADKGLLKVTE- 144 (289)
Q Consensus 77 ~~p~~l~~d~-~g~l~v~~--~~g~i~~~~-~~g~~-~~~~~~~~~p~~gl~~d------~~g~l~v~~~~~~i~~~~~- 144 (289)
..|..+.... +.++.+-+ ..+.|+++| ..|++ +.|......++..++-+ ....-|++-..++++++|+
T Consensus 481 ~~P~k~mL~~~d~~mil~~~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR 560 (794)
T PF08553_consen 481 FTPKKAMLHDQDRNMILLDPNNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPR 560 (794)
T ss_pred cCcchhhhhccccceEeecCCCCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccC
Confidence 3455544433 44555433 346788888 56653 44433222212122221 1234677766689999993
Q ss_pred -CCeEEEEeccCC-ccccCccceEEcCCCcEEEeeCCCccCccccccccceecCCCEEEEEeCCCCeEEEeeCCCCCc-c
Q 022967 145 -EGVTVLASHVNG-SRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFA-N 221 (289)
Q Consensus 145 -~g~~~~~~~~~~-~~~~~~~~l~~~~dG~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~p-~ 221 (289)
.|-..+...... ...+.-..++.+.+|+|.|+.. .|.|-.||.-+.+......++..| .
T Consensus 561 ~~~~k~v~~~~k~Y~~~~~Fs~~aTt~~G~iavgs~------------------~G~IRLyd~~g~~AKT~lp~lG~pI~ 622 (794)
T PF08553_consen 561 LSGNKLVDSQSKQYSSKNNFSCFATTEDGYIAVGSN------------------KGDIRLYDRLGKRAKTALPGLGDPII 622 (794)
T ss_pred CCCCceeeccccccccCCCceEEEecCCceEEEEeC------------------CCcEEeecccchhhhhcCCCCCCCee
Confidence 341111111100 1112234778888999998864 377777886544444444565555 6
Q ss_pred eEEEecCCCEEEEEeCCCCeEEEEE
Q 022967 222 GVALSKDEDYLVVCETFKFRCLKYW 246 (289)
Q Consensus 222 gl~~~~d~~~l~v~~~~~~~i~~~~ 246 (289)
+|.++.||+|+..+.. .-|..++
T Consensus 623 ~iDvt~DGkwilaTc~--tyLlLi~ 645 (794)
T PF08553_consen 623 GIDVTADGKWILATCK--TYLLLID 645 (794)
T ss_pred EEEecCCCcEEEEeec--ceEEEEE
Confidence 8999999998777743 3344454
No 199
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=94.51 E-value=1.3 Score=38.64 Aligned_cols=143 Identities=13% Similarity=0.098 Sum_probs=81.2
Q ss_pred eEEEcc-CCCEEEEecCCeEEEEe-cCCceEEeeeec-CcCccCeEEcCCCcEEEEeCCCceEEEe-CCC-e-EEEEecc
Q 022967 81 DVCVDR-NGVLYTATRDGWIKRLH-KNGTWENWKLIG-GDTLLGITTTQENEILVCDADKGLLKVT-EEG-V-TVLASHV 154 (289)
Q Consensus 81 ~l~~d~-~g~l~v~~~~g~i~~~~-~~g~~~~~~~~~-~~p~~gl~~d~~g~l~v~~~~~~i~~~~-~~g-~-~~~~~~~ 154 (289)
.+.+.+ ++.++.++-++.|..|| ..|+........ .... .++.+++.+++.+...+.+-.++ +.| + ..+
T Consensus 282 ~V~~~~~dpqvit~S~D~tvrlWDl~agkt~~tlt~hkksvr-al~lhP~e~~fASas~dnik~w~~p~g~f~~nl---- 356 (460)
T KOG0285|consen 282 SVMCQPTDPQVITGSHDSTVRLWDLRAGKTMITLTHHKKSVR-ALCLHPKENLFASASPDNIKQWKLPEGEFLQNL---- 356 (460)
T ss_pred eEEeecCCCceEEecCCceEEEeeeccCceeEeeecccceee-EEecCCchhhhhccCCccceeccCCccchhhcc----
Confidence 345555 78899888889999998 566543322222 2344 67777877777765545566666 666 2 221
Q ss_pred CCccccCccceEEcCCCcEEEeeCCCccCccccccccceecCCCEEEEEeCCCCeEEEee------CCCCC---cceEEE
Q 022967 155 NGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILL------DSLFF---ANGVAL 225 (289)
Q Consensus 155 ~~~~~~~~~~l~~~~dG~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~------~~~~~---p~gl~~ 225 (289)
.+ .....+.|.+..||.++.+. .+|.|+.+|-++|---... ..+.. ....+|
T Consensus 357 sg-h~~iintl~~nsD~v~~~G~------------------dng~~~fwdwksg~nyQ~~~t~vqpGSl~sEagI~as~f 417 (460)
T KOG0285|consen 357 SG-HNAIINTLSVNSDGVLVSGG------------------DNGSIMFWDWKSGHNYQRGQTIVQPGSLESEAGIFASCF 417 (460)
T ss_pred cc-ccceeeeeeeccCceEEEcC------------------CceEEEEEecCcCcccccccccccCCccccccceeEEee
Confidence 11 11246678888887655442 2467888876654211111 11111 122367
Q ss_pred ecCCCEEEEEeCCCCeEEEEEec
Q 022967 226 SKDEDYLVVCETFKFRCLKYWLK 248 (289)
Q Consensus 226 ~~d~~~l~v~~~~~~~i~~~~~~ 248 (289)
+..|..|+-++.. ..|-.|.-+
T Consensus 418 Dktg~rlit~ead-KtIk~~keD 439 (460)
T KOG0285|consen 418 DKTGSRLITGEAD-KTIKMYKED 439 (460)
T ss_pred cccCceEEeccCC-cceEEEecc
Confidence 7777767666554 556555443
No 200
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=94.49 E-value=3.1 Score=36.45 Aligned_cols=70 Identities=19% Similarity=0.251 Sum_probs=49.2
Q ss_pred ccCccceEEcCCCcEEEeeCCCccCccccccccceecCCCEEEEEeCCCCeEEEee-CCCCCcceEEEecCCCEEEEEeC
Q 022967 159 INLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILL-DSLFFANGVALSKDEDYLVVCET 237 (289)
Q Consensus 159 ~~~~~~l~~~~dG~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~-~~~~~p~gl~~~~d~~~l~v~~~ 237 (289)
+.....|...+||..+++... ....|...|++++....+. .++..-.-+.|+||+++|+.+.-
T Consensus 195 h~pVtsmqwn~dgt~l~tAS~----------------gsssi~iWdpdtg~~~pL~~~glgg~slLkwSPdgd~lfaAt~ 258 (445)
T KOG2139|consen 195 HNPVTSMQWNEDGTILVTASF----------------GSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDGDVLFAATC 258 (445)
T ss_pred CceeeEEEEcCCCCEEeeccc----------------CcceEEEEcCCCCCcccccccCCCceeeEEEcCCCCEEEEecc
Confidence 345678999999999988653 2356888899888766554 44444455789999998777743
Q ss_pred CCCeEEEEE
Q 022967 238 FKFRCLKYW 246 (289)
Q Consensus 238 ~~~~i~~~~ 246 (289)
.++++.+
T Consensus 259 --davfrlw 265 (445)
T KOG2139|consen 259 --DAVFRLW 265 (445)
T ss_pred --cceeeee
Confidence 4555555
No 201
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=94.46 E-value=2.9 Score=35.99 Aligned_cols=53 Identities=8% Similarity=-0.038 Sum_probs=32.9
Q ss_pred CEEEEEeCCCCeEEEeeCC----CCCcceEEEecCCCEEEEEeCCCCeEEEEEecCCCC
Q 022967 198 GKLLKYDPSLNETSILLDS----LFFANGVALSKDEDYLVVCETFKFRCLKYWLKGESK 252 (289)
Q Consensus 198 g~i~~~~~~~~~~~~~~~~----~~~p~gl~~~~d~~~l~v~~~~~~~i~~~~~~~~~~ 252 (289)
+.++..+..+.-++.+..+ ..+.+ -+++|.|+|+|.... ...+|+|.....++
T Consensus 415 ntv~imn~qGQvVrsfsSGkREgGdFi~-~~lSpkGewiYcigE-D~vlYCF~~~sG~L 471 (508)
T KOG0275|consen 415 NTVYIMNMQGQVVRSFSSGKREGGDFIN-AILSPKGEWIYCIGE-DGVLYCFSVLSGKL 471 (508)
T ss_pred CeEEEEeccceEEeeeccCCccCCceEE-EEecCCCcEEEEEcc-CcEEEEEEeecCce
Confidence 5566666664333444322 23323 468999999998843 47889998765444
No 202
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=94.43 E-value=0.76 Score=40.97 Aligned_cols=90 Identities=17% Similarity=0.267 Sum_probs=53.6
Q ss_pred CCCEEEEecCCeEEEEec-CCceEEeeeecC--cCccCeEEcCCCcEEEEeCCCceEEEe-CCC-eEEEEeccCCccccC
Q 022967 87 NGVLYTATRDGWIKRLHK-NGTWENWKLIGG--DTLLGITTTQENEILVCDADKGLLKVT-EEG-VTVLASHVNGSRINL 161 (289)
Q Consensus 87 ~g~l~v~~~~g~i~~~~~-~g~~~~~~~~~~--~p~~gl~~d~~g~l~v~~~~~~i~~~~-~~g-~~~~~~~~~~~~~~~ 161 (289)
+|+||+++.++.++.++. +|+........+ .-. +-.+..++.+|+......++.++ .+| ...............
T Consensus 111 ~G~i~~g~~~g~~y~ld~~~G~~~W~~~~~~~~~~~-~~~v~~~~~v~~~s~~g~~~al~~~tG~~~W~~~~~~~~~~~~ 189 (370)
T COG1520 111 DGKIYVGSWDGKLYALDASTGTLVWSRNVGGSPYYA-SPPVVGDGTVYVGTDDGHLYALNADTGTLKWTYETPAPLSLSI 189 (370)
T ss_pred CCeEEEecccceEEEEECCCCcEEEEEecCCCeEEe-cCcEEcCcEEEEecCCCeEEEEEccCCcEEEEEecCCcccccc
Confidence 899999999999999996 787654433333 122 33333578888885446699999 557 433322111011112
Q ss_pred ccceEEcCCCcEEEeeC
Q 022967 162 ADDLIAATDGSIYFSVA 178 (289)
Q Consensus 162 ~~~l~~~~dG~lyv~~~ 178 (289)
..... ..+|.+|++..
T Consensus 190 ~~~~~-~~~~~vy~~~~ 205 (370)
T COG1520 190 YGSPA-IASGTVYVGSD 205 (370)
T ss_pred ccCce-eecceEEEecC
Confidence 22222 56788888854
No 203
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=94.41 E-value=0.64 Score=41.28 Aligned_cols=82 Identities=16% Similarity=0.020 Sum_probs=46.0
Q ss_pred CCEEEEEeCCCCeEEEeeCCC-CCcceEEEecCCCEEEEEeCCCCeEEEEEecCCCCcceeeeeccCCCCC--CceeeCC
Q 022967 197 HGKLLKYDPSLNETSILLDSL-FFANGVALSKDEDYLVVCETFKFRCLKYWLKGESKEQTEIFVENLPGGP--DNIKLAP 273 (289)
Q Consensus 197 ~g~i~~~~~~~~~~~~~~~~~-~~p~gl~~~~d~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~p--~~i~~d~ 273 (289)
...+|.+|.++++.+++-++- .+..|..++++.+.+|.... .+.|+++|+++.+. ..++. ....+. .....++
T Consensus 59 ~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~~~Yv~~-~~~l~~vdL~T~e~--~~vy~-~p~~~~g~gt~v~n~ 134 (386)
T PF14583_consen 59 NRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDRALYYVKN-GRSLRRVDLDTLEE--RVVYE-VPDDWKGYGTWVANS 134 (386)
T ss_dssp S-EEEEEETTT-EEEE---SS-B-TTT-EE-TTSSEEEEEET-TTEEEEEETTT--E--EEEEE---TTEEEEEEEEE-T
T ss_pred CcceEEEEcccCEEEECccCCCCCccceEEecCCCeEEEEEC-CCeEEEEECCcCcE--EEEEE-CCcccccccceeeCC
Confidence 457999999999998886643 33447788898888866543 37899999886432 22222 111222 1244577
Q ss_pred CCCEEEEEe
Q 022967 274 DGSFWIAIL 282 (289)
Q Consensus 274 ~G~lwv~~~ 282 (289)
|++..++..
T Consensus 135 d~t~~~g~e 143 (386)
T PF14583_consen 135 DCTKLVGIE 143 (386)
T ss_dssp TSSEEEEEE
T ss_pred CccEEEEEE
Confidence 888888764
No 204
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=94.31 E-value=2.5 Score=40.78 Aligned_cols=148 Identities=15% Similarity=0.164 Sum_probs=80.9
Q ss_pred ceEEEccCCCEE-EEecCCeEEEEecCC------ceEEeeeecCcCccCeEEcCCCcEEEEeCCCceEEEe--CCCeEEE
Q 022967 80 EDVCVDRNGVLY-TATRDGWIKRLHKNG------TWENWKLIGGDTLLGITTTQENEILVCDADKGLLKVT--EEGVTVL 150 (289)
Q Consensus 80 ~~l~~d~~g~l~-v~~~~g~i~~~~~~g------~~~~~~~~~~~p~~gl~~d~~g~l~v~~~~~~i~~~~--~~g~~~~ 150 (289)
.+.++.+.++.. +++.+|+|..+..-| ..+.+........ +++|..+|....+....+++..- ..+.+.+
T Consensus 209 t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~-~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~kqf 287 (792)
T KOG1963|consen 209 TCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVN-SLSFSSDGAYLLSGGREGVLVLWQLETGKKQF 287 (792)
T ss_pred eeEEeccccceEEEeccCCcEEEEeccccccccccceEEEecccccc-eeEEecCCceEeecccceEEEEEeecCCCccc
Confidence 446777777766 666889999997333 2334444445667 99999898644443224444433 3332223
Q ss_pred EeccCCccccCccceEEcCCCcEEEeeCCCccCccccccccceecCCCEEEEEeCCCCeEEEeeCC------------CC
Q 022967 151 ASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDS------------LF 218 (289)
Q Consensus 151 ~~~~~~~~~~~~~~l~~~~dG~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~------------~~ 218 (289)
.+... ....++.+.||+.+|-.... .+.|..+...+-+......+ -.
T Consensus 288 LPRLg----s~I~~i~vS~ds~~~sl~~~-----------------DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~ 346 (792)
T KOG1963|consen 288 LPRLG----SPILHIVVSPDSDLYSLVLE-----------------DNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQS 346 (792)
T ss_pred ccccC----CeeEEEEEcCCCCeEEEEec-----------------CceEEEEeccchhhhhhccCccCCCccccccccc
Confidence 22222 13458899999988765432 23344443321111111111 23
Q ss_pred CcceEEEecCCCEEEEEeCCCCeEEEEEecCC
Q 022967 219 FANGVALSKDEDYLVVCETFKFRCLKYWLKGE 250 (289)
Q Consensus 219 ~p~gl~~~~d~~~l~v~~~~~~~i~~~~~~~~ 250 (289)
.+.++.++|--+ -.+-+...+.|+.||+-.+
T Consensus 347 l~t~~~idpr~~-~~vln~~~g~vQ~ydl~td 377 (792)
T KOG1963|consen 347 LTTGVSIDPRTN-SLVLNGHPGHVQFYDLYTD 377 (792)
T ss_pred cceeEEEcCCCC-ceeecCCCceEEEEecccc
Confidence 456778888444 2333345678888887544
No 205
>KOG1215 consensus Low-density lipoprotein receptors containing Ca2+-binding EGF-like domains [Signal transduction mechanisms]
Probab=94.27 E-value=2.5 Score=42.34 Aligned_cols=169 Identities=15% Similarity=0.193 Sum_probs=102.7
Q ss_pred CCCEEEE-ecCCeEEEEecCCceEEe--eeecCcCccCeEEcC-CCcEEEEeCCCc-eEEEeCCC-e-EEEEeccCCccc
Q 022967 87 NGVLYTA-TRDGWIKRLHKNGTWENW--KLIGGDTLLGITTTQ-ENEILVCDADKG-LLKVTEEG-V-TVLASHVNGSRI 159 (289)
Q Consensus 87 ~g~l~v~-~~~g~i~~~~~~g~~~~~--~~~~~~p~~gl~~d~-~g~l~v~~~~~~-i~~~~~~g-~-~~~~~~~~~~~~ 159 (289)
++.+|-. .....|.+...++..... ......+- ++++|. .+++|.+|.... +...+.+| . .+++... +
T Consensus 448 ~~~i~~~d~~~~~i~~~~~~~~~~~~~~~~g~~~~~-~lavD~~~~~~y~tDe~~~~i~v~~~~g~~~~vl~~~~----l 522 (877)
T KOG1215|consen 448 NNRIYWADLSDEKICRASQDGSSECELCGDGLCIPE-GLAVDWIGDNIYWTDEGNCLIEVADLDGSSRKVLVSKD----L 522 (877)
T ss_pred CCEEEEEeccCCeEeeeccCCCccceEeccCccccC-cEEEEeccCCceecccCCceeEEEEccCCceeEEEecC----C
Confidence 4455533 356667777655543332 33344577 999985 447999987643 33333455 3 3333321 1
Q ss_pred cCccceEEcC-CCcEEEeeCCCccCccccccccceecCCCEEEEEeCCCCeEEE-eeCCCCCcceEEEecCCCEEEEEeC
Q 022967 160 NLADDLIAAT-DGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSI-LLDSLFFANGVALSKDEDYLVVCET 237 (289)
Q Consensus 160 ~~~~~l~~~~-dG~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~-~~~~~~~p~gl~~~~d~~~l~v~~~ 237 (289)
..+..++++| .|.+|+++-.. ..++.|-..++..... +..+...|+|++.+-..+.+|+++.
T Consensus 523 ~~~r~~~v~p~~g~~~wtd~~~----------------~~~i~ra~~dg~~~~~l~~~~~~~p~glt~d~~~~~~yw~d~ 586 (877)
T KOG1215|consen 523 DLPRSIAVDPEKGLMFWTDWGQ----------------PPRIERASLDGSERAVLVTNGILWPNGLTIDYETDRLYWADA 586 (877)
T ss_pred CCccceeeccccCeeEEecCCC----------------CchhhhhcCCCCCceEEEeCCccCCCcceEEeecceeEEEcc
Confidence 3578899999 67899998541 1245565565444333 3445789999999988888999998
Q ss_pred CCC-eEEEEEecCCCCcceeeeeccCCCCCCceeeCCCCCEEE
Q 022967 238 FKF-RCLKYWLKGESKEQTEIFVENLPGGPDNIKLAPDGSFWI 279 (289)
Q Consensus 238 ~~~-~i~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~lwv 279 (289)
... .+...+.+|.... .........|..+++-.+..+|.
T Consensus 587 ~~~~~i~~~~~~g~~r~---~~~~~~~~~p~~~~~~~~~iyw~ 626 (877)
T KOG1215|consen 587 KLDYTIESANMDGQNRR---VVDSEDLPHPFGLSVFEDYIYWT 626 (877)
T ss_pred cCCcceeeeecCCCceE---EeccccCCCceEEEEecceeEEe
Confidence 877 6888887764221 12212224577777766544443
No 206
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=94.15 E-value=3 Score=35.00 Aligned_cols=178 Identities=10% Similarity=0.067 Sum_probs=93.9
Q ss_pred EEEccCCCEEEEec-CCeEEEEe-cCCc-eEEeeeecCcCccCeEEcCCCcEEEEeC-CCceEEEe-CCC--eEEEEecc
Q 022967 82 VCVDRNGVLYTATR-DGWIKRLH-KNGT-WENWKLIGGDTLLGITTTQENEILVCDA-DKGLLKVT-EEG--VTVLASHV 154 (289)
Q Consensus 82 l~~d~~g~l~v~~~-~g~i~~~~-~~g~-~~~~~~~~~~p~~gl~~d~~g~l~v~~~-~~~i~~~~-~~g--~~~~~~~~ 154 (289)
|-.+.+|.|.+++. +...-+|- .+|+ +-.+....+... .+.+|.+.+..++.. ++.+..+| +.| +-.+...
T Consensus 16 iKyN~eGDLlFscaKD~~~~vw~s~nGerlGty~GHtGavW-~~Did~~s~~liTGSAD~t~kLWDv~tGk~la~~k~~- 93 (327)
T KOG0643|consen 16 IKYNREGDLLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVW-CCDIDWDSKHLITGSADQTAKLWDVETGKQLATWKTN- 93 (327)
T ss_pred EEecCCCcEEEEecCCCCceEEEecCCceeeeecCCCceEE-EEEecCCcceeeeccccceeEEEEcCCCcEEEEeecC-
Confidence 45566888876663 33333333 3564 333333334444 666666655555533 35566666 677 2222111
Q ss_pred CCccccCccceEEcCCCcEEEeeCCCccCccccccccceecCCCEEEEEeCC-------CCe-EEEeeCCCCCcceEEEe
Q 022967 155 NGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPS-------LNE-TSILLDSLFFANGVALS 226 (289)
Q Consensus 155 ~~~~~~~~~~l~~~~dG~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~-------~~~-~~~~~~~~~~p~gl~~~ 226 (289)
.....+.++.+|++.+......-| ..+.|..+|.. ..+ +..+...-..++...|+
T Consensus 94 -----~~Vk~~~F~~~gn~~l~~tD~~mg------------~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg 156 (327)
T KOG0643|consen 94 -----SPVKRVDFSFGGNLILASTDKQMG------------YTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWG 156 (327)
T ss_pred -----CeeEEEeeccCCcEEEEEehhhcC------------cceEEEEEEccCChhhhcccCceEEecCCccceeeeeec
Confidence 235677888888754433221111 12334444433 122 22333334567778899
Q ss_pred cCCCEEEEEeCCCCeEEEEEecCC-CCcceeeeeccCCCCCCceeeCCCCCEEEEEe
Q 022967 227 KDEDYLVVCETFKFRCLKYWLKGE-SKEQTEIFVENLPGGPDNIKLAPDGSFWIAIL 282 (289)
Q Consensus 227 ~d~~~l~v~~~~~~~i~~~~~~~~-~~~~~~~~~~~~~~~p~~i~~d~~G~lwv~~~ 282 (289)
|-++.++.. .....|.+||.... .+.+... ......++|...++..++|...
T Consensus 157 ~l~~~ii~G-he~G~is~~da~~g~~~v~s~~---~h~~~Ind~q~s~d~T~FiT~s 209 (327)
T KOG0643|consen 157 PLGETIIAG-HEDGSISIYDARTGKELVDSDE---EHSSKINDLQFSRDRTYFITGS 209 (327)
T ss_pred ccCCEEEEe-cCCCcEEEEEcccCceeeechh---hhccccccccccCCcceEEecc
Confidence 999955444 55689999998643 1111100 1112456677778888877654
No 207
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=94.13 E-value=1.4 Score=39.72 Aligned_cols=172 Identities=15% Similarity=0.177 Sum_probs=78.9
Q ss_pred cCCcceEEEccCCCE-EEEecCCeEEEEe-cCCceEEeeeecCcCccCeEEcCCCcEEEEeCCCceEEEeCCC--eEEEE
Q 022967 76 LNGPEDVCVDRNGVL-YTATRDGWIKRLH-KNGTWENWKLIGGDTLLGITTTQENEILVCDADKGLLKVTEEG--VTVLA 151 (289)
Q Consensus 76 ~~~p~~l~~d~~g~l-~v~~~~g~i~~~~-~~g~~~~~~~~~~~p~~gl~~d~~g~l~v~~~~~~i~~~~~~g--~~~~~ 151 (289)
-.+|..+-...+|+- .++...|.|..+| .++++..-........ .+.|-.+..+|.+.-.+-++.+|.+| +..+-
T Consensus 129 eFGPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~v~Etv~-Dv~~LHneq~~AVAQK~y~yvYD~~GtElHClk 207 (545)
T KOG1272|consen 129 EFGPYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEINVMETVR-DVTFLHNEQFFAVAQKKYVYVYDNNGTELHCLK 207 (545)
T ss_pred ccCCeeeeecCCccEEEecCCccceeeeecccceeeeeeehhhhhh-hhhhhcchHHHHhhhhceEEEecCCCcEEeehh
Confidence 468999999888875 4777889999998 5665432111111222 33332232222222123455565555 22221
Q ss_pred eccCCcccc-Cccce---EEcCCCcEEEeeCCC-----ccCccccccccceecCCCEEEEEeCCCCeEEEeeCC------
Q 022967 152 SHVNGSRIN-LADDL---IAATDGSIYFSVAST-----KFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDS------ 216 (289)
Q Consensus 152 ~~~~~~~~~-~~~~l---~~~~dG~lyv~~~~~-----~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~------ 216 (289)
....-..+. .|+.+ +.+..|.+=.-|-++ .+....-...++..++.+.|..+.-.+|.+......
T Consensus 208 ~~~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~skePLv 287 (545)
T KOG1272|consen 208 RHIRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNAVIHLGHSNGTVSLWSPNSKEPLV 287 (545)
T ss_pred hcCchhhhcccchhheeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCccceEEEcCCCceEEecCCCCcchHH
Confidence 111000000 11111 111223221111110 000000011334455555666665544544433221
Q ss_pred -----CCCcceEEEecCCCEEEEEeCCCCeEEEEEecC
Q 022967 217 -----LFFANGVALSKDEDYLVVCETFKFRCLKYWLKG 249 (289)
Q Consensus 217 -----~~~p~gl~~~~d~~~l~v~~~~~~~i~~~~~~~ 249 (289)
...-++|+++++|.++ ++....+.+.+||+..
T Consensus 288 KiLcH~g~V~siAv~~~G~YM-aTtG~Dr~~kIWDlR~ 324 (545)
T KOG1272|consen 288 KILCHRGPVSSIAVDRGGRYM-ATTGLDRKVKIWDLRN 324 (545)
T ss_pred HHHhcCCCcceEEECCCCcEE-eecccccceeEeeecc
Confidence 2233689999999843 4434467888898864
No 208
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=94.12 E-value=0.63 Score=42.22 Aligned_cols=136 Identities=10% Similarity=0.055 Sum_probs=71.8
Q ss_pred CeEEcCCCcEEEEeCC-CceEEEe-CCC--eEEEEeccCCccccCccceEEcCCC-cEEEeeCCCccCccccccccceec
Q 022967 121 GITTTQENEILVCDAD-KGLLKVT-EEG--VTVLASHVNGSRINLADDLIAATDG-SIYFSVASTKFGLHNWGLDLLEAK 195 (289)
Q Consensus 121 gl~~d~~g~l~v~~~~-~~i~~~~-~~g--~~~~~~~~~~~~~~~~~~l~~~~dG-~lyv~~~~~~~~~~~~~~~~~~~~ 195 (289)
.|++.+|.++-++-.. ..|..+| .+. ++.+....+ ....|.+.+|| +||-+--
T Consensus 514 ALa~spDakvcFsccsdGnI~vwDLhnq~~VrqfqGhtD-----GascIdis~dGtklWTGGl----------------- 571 (705)
T KOG0639|consen 514 ALAISPDAKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTD-----GASCIDISKDGTKLWTGGL----------------- 571 (705)
T ss_pred hhhcCCccceeeeeccCCcEEEEEcccceeeecccCCCC-----CceeEEecCCCceeecCCC-----------------
Confidence 5677778777665433 4466677 554 444422222 45688999999 5775432
Q ss_pred CCCEEEEEeCCCCeEEEeeCCCCCcceEEEecCCCEEEEEeCCCCeEEEEEecCCCCcceeeeeccCCCCCCceeeCCCC
Q 022967 196 PHGKLLKYDPSLNETSILLDSLFFANGVALSKDEDYLVVCETFKFRCLKYWLKGESKEQTEIFVENLPGGPDNIKLAPDG 275 (289)
Q Consensus 196 ~~g~i~~~~~~~~~~~~~~~~~~~p~gl~~~~d~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G 275 (289)
.+.|..+|...++-..-.+-....-.+...|.++||.|. +.+..+.+....+. .++..- ....-.-.+.+..-|
T Consensus 572 -DntvRcWDlregrqlqqhdF~SQIfSLg~cP~~dWlavG-Mens~vevlh~skp--~kyqlh--lheScVLSlKFa~cG 645 (705)
T KOG0639|consen 572 -DNTVRCWDLREGRQLQQHDFSSQIFSLGYCPTGDWLAVG-MENSNVEVLHTSKP--EKYQLH--LHESCVLSLKFAYCG 645 (705)
T ss_pred -ccceeehhhhhhhhhhhhhhhhhheecccCCCccceeee-cccCcEEEEecCCc--cceeec--ccccEEEEEEecccC
Confidence 245666665433211111111122344566888888877 44566766654432 111110 111122345666778
Q ss_pred CEEEEEeCc
Q 022967 276 SFWIAILQV 284 (289)
Q Consensus 276 ~lwv~~~~g 284 (289)
.+||++-..
T Consensus 646 kwfvStGkD 654 (705)
T KOG0639|consen 646 KWFVSTGKD 654 (705)
T ss_pred ceeeecCch
Confidence 888877543
No 209
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=94.10 E-value=3.8 Score=37.02 Aligned_cols=149 Identities=11% Similarity=0.065 Sum_probs=76.9
Q ss_pred CCcceEEEccCCCEE-EEecCCeEEEEecCCc--eEEeeeecCcCccCeEEcCCC-cEEEEeCCCceEEEe-CCC-eEEE
Q 022967 77 NGPEDVCVDRNGVLY-TATRDGWIKRLHKNGT--WENWKLIGGDTLLGITTTQEN-EILVCDADKGLLKVT-EEG-VTVL 150 (289)
Q Consensus 77 ~~p~~l~~d~~g~l~-v~~~~g~i~~~~~~g~--~~~~~~~~~~p~~gl~~d~~g-~l~v~~~~~~i~~~~-~~g-~~~~ 150 (289)
....++.+-.||+|. +++..|.|..+|..-+ +..+ .....|..-+.|.+.+ .++++..+.++.++. .++ ..++
T Consensus 69 ~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~r~iLR~~-~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~ 147 (487)
T KOG0310|consen 69 DVVYSVDFRSDGRLLAAGDESGHVKVFDMKSRVILRQL-YAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQA 147 (487)
T ss_pred cceeEEEeecCCeEEEccCCcCcEEEeccccHHHHHHH-hhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEE
Confidence 345556666678877 5556677777772110 1111 1122333255666544 566655556666665 444 3221
Q ss_pred EeccCCccccCccceEEcC-CCcEEEeeCCCccCccccccccceecCCCEEEEEeCCCCeEEEeeCCCCCc-ceEEEecC
Q 022967 151 ASHVNGSRINLADDLIAAT-DGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFA-NGVALSKD 228 (289)
Q Consensus 151 ~~~~~~~~~~~~~~l~~~~-dG~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~p-~gl~~~~d 228 (289)
. ..+.. -..+..++.| ++.|.++-+. .|.|-.+|.......++.-+-..| ..+.+-|.
T Consensus 148 -~-l~~ht-DYVR~g~~~~~~~hivvtGsY-----------------Dg~vrl~DtR~~~~~v~elnhg~pVe~vl~lps 207 (487)
T KOG0310|consen 148 -E-LSGHT-DYVRCGDISPANDHIVVTGSY-----------------DGKVRLWDTRSLTSRVVELNHGCPVESVLALPS 207 (487)
T ss_pred -E-ecCCc-ceeEeeccccCCCeEEEecCC-----------------CceEEEEEeccCCceeEEecCCCceeeEEEcCC
Confidence 1 11111 1455566665 5678777442 466666665543222222222233 33455566
Q ss_pred CCEEEEEeCCCCeEEEEEec
Q 022967 229 EDYLVVCETFKFRCLKYWLK 248 (289)
Q Consensus 229 ~~~l~v~~~~~~~i~~~~~~ 248 (289)
|. ++++. +.+.+.+||+.
T Consensus 208 gs-~iasA-gGn~vkVWDl~ 225 (487)
T KOG0310|consen 208 GS-LIASA-GGNSVKVWDLT 225 (487)
T ss_pred CC-EEEEc-CCCeEEEEEec
Confidence 65 66664 55889999987
No 210
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=94.05 E-value=2.2 Score=42.09 Aligned_cols=139 Identities=17% Similarity=0.185 Sum_probs=76.9
Q ss_pred cceEEEccCCCEE-EEecCCeEEEEecC--C------------ceEEe------eeecCcCccCeEEcCCCcEEEEeC-C
Q 022967 79 PEDVCVDRNGVLY-TATRDGWIKRLHKN--G------------TWENW------KLIGGDTLLGITTTQENEILVCDA-D 136 (289)
Q Consensus 79 p~~l~~d~~g~l~-v~~~~g~i~~~~~~--g------------~~~~~------~~~~~~p~~gl~~d~~g~l~v~~~-~ 136 (289)
-.++-+.+||..+ .|..+.-|..+..+ | ..+.| ....+... .+.+++++.++++-. +
T Consensus 72 v~CVR~S~dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~-Dv~Wsp~~~~lvS~s~D 150 (942)
T KOG0973|consen 72 VNCVRFSPDGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVL-DVNWSPDDSLLVSVSLD 150 (942)
T ss_pred eeEEEECCCCCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccc-eeccCCCccEEEEeccc
Confidence 4556688888755 66666555555522 1 11222 12223445 788899888777643 3
Q ss_pred CceEEEe-CCC--eEEEEeccCCccccCccceEEcCCCcEEEeeCCCccCccccccccceecCCCEEEEEeCCCCeEEEe
Q 022967 137 KGLLKVT-EEG--VTVLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSIL 213 (289)
Q Consensus 137 ~~i~~~~-~~g--~~~~~~~~~~~~~~~~~~l~~~~dG~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~ 213 (289)
+.|..++ ... ++++... ...+.|+.+||-|..+.+... ...|..++..+-.++..
T Consensus 151 nsViiwn~~tF~~~~vl~~H-----~s~VKGvs~DP~Gky~ASqsd-----------------Drtikvwrt~dw~i~k~ 208 (942)
T KOG0973|consen 151 NSVIIWNAKTFELLKVLRGH-----QSLVKGVSWDPIGKYFASQSD-----------------DRTLKVWRTSDWGIEKS 208 (942)
T ss_pred ceEEEEccccceeeeeeecc-----cccccceEECCccCeeeeecC-----------------CceEEEEEcccceeeEe
Confidence 6688887 332 4444221 235789999999987666543 22333333222222222
Q ss_pred eCC-------CCCcceEEEecCCCEEEEEeCCCC
Q 022967 214 LDS-------LFFANGVALSKDEDYLVVCETFKF 240 (289)
Q Consensus 214 ~~~-------~~~p~gl~~~~d~~~l~v~~~~~~ 240 (289)
..+ ..+-..+.|+|||++|-.....++
T Consensus 209 It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n~ 242 (942)
T KOG0973|consen 209 ITKPFEESPLTTFFLRLSWSPDGHHLASPNAVNG 242 (942)
T ss_pred eccchhhCCCcceeeecccCCCcCeecchhhccC
Confidence 111 112245789999998877665443
No 211
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=93.70 E-value=0.89 Score=38.82 Aligned_cols=135 Identities=13% Similarity=0.210 Sum_probs=69.7
Q ss_pred ceEEEccCCCEEE-EecCCeEEEEecCC-----ceEEeeeecCcCccCeEEcCCCcEEEEeCCCceEEE-eCCCeEEEEe
Q 022967 80 EDVCVDRNGVLYT-ATRDGWIKRLHKNG-----TWENWKLIGGDTLLGITTTQENEILVCDADKGLLKV-TEEGVTVLAS 152 (289)
Q Consensus 80 ~~l~~d~~g~l~v-~~~~g~i~~~~~~g-----~~~~~~~~~~~p~~gl~~d~~g~l~v~~~~~~i~~~-~~~g~~~~~~ 152 (289)
..+.+.|...+.+ +..++.|-.+|-.. ....+. ...... .|.|++.|++..+...+-+.|+ |-+-.+-++.
T Consensus 176 n~l~FHPre~ILiS~srD~tvKlFDfsK~saKrA~K~~q-d~~~vr-siSfHPsGefllvgTdHp~~rlYdv~T~Qcfvs 253 (430)
T KOG0640|consen 176 NDLDFHPRETILISGSRDNTVKLFDFSKTSAKRAFKVFQ-DTEPVR-SISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVS 253 (430)
T ss_pred cceeecchhheEEeccCCCeEEEEecccHHHHHHHHHhh-ccceee-eEeecCCCceEEEecCCCceeEEeccceeEeee
Confidence 3466666556653 44667777776211 111111 122334 8999999986655445544443 3111233333
Q ss_pred ccCCccc-cCccceEEcCCCcEEEeeCCCccCccccccccceecCCCEEEEEeCCCCeE-EEe--eCCCCCcceEEEecC
Q 022967 153 HVNGSRI-NLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNET-SIL--LDSLFFANGVALSKD 228 (289)
Q Consensus 153 ~~~~~~~-~~~~~l~~~~dG~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~-~~~--~~~~~~p~gl~~~~d 228 (289)
..+...+ .....+.-.+.|+||++... .|.|-.+|.-.++. +.+ +.+....-...|+.+
T Consensus 254 anPd~qht~ai~~V~Ys~t~~lYvTaSk-----------------DG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn 316 (430)
T KOG0640|consen 254 ANPDDQHTGAITQVRYSSTGSLYVTASK-----------------DGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKN 316 (430)
T ss_pred cCcccccccceeEEEecCCccEEEEecc-----------------CCcEEeeccccHHHHHHHHhhcCCceeeeEEEccC
Confidence 2222222 24556777889999998653 46666666443321 111 122222334567777
Q ss_pred CCEEE
Q 022967 229 EDYLV 233 (289)
Q Consensus 229 ~~~l~ 233 (289)
++++.
T Consensus 317 ~kyiL 321 (430)
T KOG0640|consen 317 GKYIL 321 (430)
T ss_pred CeEEe
Confidence 77443
No 212
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=93.50 E-value=5.7 Score=35.98 Aligned_cols=178 Identities=11% Similarity=0.139 Sum_probs=91.9
Q ss_pred EEcc-CCCEEEEecCCeEEEEe-cCCceEEe--eeecCcCccCeEEc-CCCcEEEEeCCCceEEEeCCC--eEEEEeccC
Q 022967 83 CVDR-NGVLYTATRDGWIKRLH-KNGTWENW--KLIGGDTLLGITTT-QENEILVCDADKGLLKVTEEG--VTVLASHVN 155 (289)
Q Consensus 83 ~~d~-~g~l~v~~~~g~i~~~~-~~g~~~~~--~~~~~~p~~gl~~d-~~g~l~v~~~~~~i~~~~~~g--~~~~~~~~~ 155 (289)
.+.+ ++.+++...++++.++. .++..... .......- ..++. .++.+.++..+.|.+|+-... -..+..-..
T Consensus 117 ~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR-~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~elnh 195 (487)
T KOG0310|consen 117 KFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELSGHTDYVR-CGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVELNH 195 (487)
T ss_pred EecccCCeEEEecCCCceEEEEEcCCcEEEEEecCCcceeE-eeccccCCCeEEEecCCCceEEEEEeccCCceeEEecC
Confidence 3444 56677666666676665 44433211 11112233 23333 355688887776655554111 112211111
Q ss_pred CccccCccceEEcCCCcEEEeeCCCccCccccccccceecCCCEEEEEeCCCCeEEE--eeCCCCCcceEEEecCCCEEE
Q 022967 156 GSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSI--LLDSLFFANGVALSKDEDYLV 233 (289)
Q Consensus 156 ~~~~~~~~~l~~~~dG~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~--~~~~~~~p~gl~~~~d~~~l~ 233 (289)
+ .....+.+-|.|.+.++.++ ..+-.+|.-+|.... .......-..+.+..++..|+
T Consensus 196 g---~pVe~vl~lpsgs~iasAgG------------------n~vkVWDl~~G~qll~~~~~H~KtVTcL~l~s~~~rLl 254 (487)
T KOG0310|consen 196 G---CPVESVLALPSGSLIASAGG------------------NSVKVWDLTTGGQLLTSMFNHNKTVTCLRLASDSTRLL 254 (487)
T ss_pred C---CceeeEEEcCCCCEEEEcCC------------------CeEEEEEecCCceehhhhhcccceEEEEEeecCCceEe
Confidence 2 12457778888888888654 234445554333222 222333446677887887666
Q ss_pred EEeCCCCeEEEEEecCCCCcceeeeeccCCCCCCceeeCCCC-CEEEEEeCcccc
Q 022967 234 VCETFKFRCLKYWLKGESKEQTEIFVENLPGGPDNIKLAPDG-SFWIAILQVFIS 287 (289)
Q Consensus 234 v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G-~lwv~~~~g~i~ 287 (289)
-+ .-.+.+.+|+...-+... .+ ..++-.-.+++.+++ ++.+|+.+|.++
T Consensus 255 S~-sLD~~VKVfd~t~~Kvv~--s~--~~~~pvLsiavs~dd~t~viGmsnGlv~ 304 (487)
T KOG0310|consen 255 SG-SLDRHVKVFDTTNYKVVH--SW--KYPGPVLSIAVSPDDQTVVIGMSNGLVS 304 (487)
T ss_pred ec-ccccceEEEEccceEEEE--ee--ecccceeeEEecCCCceEEEecccceee
Confidence 66 445778888744321111 11 112222346665554 789998888764
No 213
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=93.44 E-value=3.2 Score=36.69 Aligned_cols=141 Identities=17% Similarity=0.193 Sum_probs=76.1
Q ss_pred EEecCCeEEEEe-cCCceEEeeeecCcCccCeEEcCCCcEEEEeCC-CceEEEe-CCC-eEEEEeccCCccccCccceEE
Q 022967 92 TATRDGWIKRLH-KNGTWENWKLIGGDTLLGITTTQENEILVCDAD-KGLLKVT-EEG-VTVLASHVNGSRINLADDLIA 167 (289)
Q Consensus 92 v~~~~g~i~~~~-~~g~~~~~~~~~~~p~~gl~~d~~g~l~v~~~~-~~i~~~~-~~g-~~~~~~~~~~~~~~~~~~l~~ 167 (289)
.+..++.|..|+ .+|....-........ .+.|..||.++++... ..|..+| ..| +........| ..+.-..+
T Consensus 149 sag~Dn~v~iWnv~tgeali~l~hpd~i~-S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG---~k~~Raif 224 (472)
T KOG0303|consen 149 SAGSDNTVSIWNVGTGEALITLDHPDMVY-SMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEG---AKPARAIF 224 (472)
T ss_pred hccCCceEEEEeccCCceeeecCCCCeEE-EEEeccCCceeeeecccceeEEEcCCCCcEeeecccccC---CCcceeEE
Confidence 334566777777 4554333233444556 7889899998887654 4566677 455 3221111111 23344556
Q ss_pred cCCCcEEEeeCCCccCccccccccceecCCCEEEEEeCCCCeEEEeeCCCCCcceEE---EecCCCEEEEEeCCCCeEEE
Q 022967 168 ATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANGVA---LSKDEDYLVVCETFKFRCLK 244 (289)
Q Consensus 168 ~~dG~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~p~gl~---~~~d~~~l~v~~~~~~~i~~ 244 (289)
-.+|.+ ++++.++...+ .+-..|++.-+.-.....+...+|+. +++|.+.+|++.-+...|+-
T Consensus 225 l~~g~i-~tTGfsr~seR-------------q~aLwdp~nl~eP~~~~elDtSnGvl~PFyD~dt~ivYl~GKGD~~IRY 290 (472)
T KOG0303|consen 225 LASGKI-FTTGFSRMSER-------------QIALWDPNNLEEPIALQELDTSNGVLLPFYDPDTSIVYLCGKGDSSIRY 290 (472)
T ss_pred eccCce-eeecccccccc-------------ceeccCcccccCcceeEEeccCCceEEeeecCCCCEEEEEecCCcceEE
Confidence 667774 44443222111 12223443211111223344456653 57899999999888888877
Q ss_pred EEecCC
Q 022967 245 YWLKGE 250 (289)
Q Consensus 245 ~~~~~~ 250 (289)
|.+..+
T Consensus 291 yEit~d 296 (472)
T KOG0303|consen 291 FEITNE 296 (472)
T ss_pred EEecCC
Confidence 776544
No 214
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=93.41 E-value=0.79 Score=40.48 Aligned_cols=145 Identities=12% Similarity=0.166 Sum_probs=84.6
Q ss_pred EEEccCC-CEEEEecCCeEEEEecCC-ceEEeeeecCcCccCeEEcCCCcEEEEeCCCceEEEe-CCC--eEEEEeccCC
Q 022967 82 VCVDRNG-VLYTATRDGWIKRLHKNG-TWENWKLIGGDTLLGITTTQENEILVCDADKGLLKVT-EEG--VTVLASHVNG 156 (289)
Q Consensus 82 l~~d~~g-~l~v~~~~g~i~~~~~~g-~~~~~~~~~~~p~~gl~~d~~g~l~v~~~~~~i~~~~-~~g--~~~~~~~~~~ 156 (289)
|...|+| +|.+++..|....++... .++.+......++..+.+..+|...|+....|.+++- .+= +..+..
T Consensus 102 v~WtPeGRRLltgs~SGEFtLWNg~~fnFEtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmnnVk~~~a---- 177 (464)
T KOG0284|consen 102 VRWTPEGRRLLTGSQSGEFTLWNGTSFNFETILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMNNVKIIQA---- 177 (464)
T ss_pred EEEcCCCceeEeecccccEEEecCceeeHHHHhhhhcccceeEEEccCCCEEEEcCCCceEEecccchhhhHHhhH----
Confidence 4556665 467777777777775211 1222222223444488888888887876656666665 221 222211
Q ss_pred ccccCccceEEcCCCcEEEeeCCCccCccccccccceecCCCEEEEEeCCCC-eEEEeeCCCCCcceEEEecCCCEEEEE
Q 022967 157 SRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLN-ETSILLDSLFFANGVALSKDEDYLVVC 235 (289)
Q Consensus 157 ~~~~~~~~l~~~~dG~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~-~~~~~~~~~~~p~gl~~~~d~~~l~v~ 235 (289)
..-...++++++|+...|++... .+.|...|-.-. +-.++.....-+..++|+|... |+++
T Consensus 178 hh~eaIRdlafSpnDskF~t~Sd-----------------Dg~ikiWdf~~~kee~vL~GHgwdVksvdWHP~kg-Lias 239 (464)
T KOG0284|consen 178 HHAEAIRDLAFSPNDSKFLTCSD-----------------DGTIKIWDFRMPKEERVLRGHGWDVKSVDWHPTKG-LIAS 239 (464)
T ss_pred hhhhhhheeccCCCCceeEEecC-----------------CCeEEEEeccCCchhheeccCCCCcceeccCCccc-eeEE
Confidence 11135789999997777776542 355555554322 2223344456678899999877 6666
Q ss_pred eCCCCeEEEEEec
Q 022967 236 ETFKFRCLKYWLK 248 (289)
Q Consensus 236 ~~~~~~i~~~~~~ 248 (289)
-...+-|..+|..
T Consensus 240 gskDnlVKlWDpr 252 (464)
T KOG0284|consen 240 GSKDNLVKLWDPR 252 (464)
T ss_pred ccCCceeEeecCC
Confidence 6666666666654
No 215
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=93.36 E-value=5.2 Score=36.45 Aligned_cols=74 Identities=18% Similarity=0.151 Sum_probs=45.9
Q ss_pred ceEEcCCCc-EEEeeCCCccCccccccccceecCCCEEEEEeCCCCeEEEeeCCCCCcceEEEecCCCEEEEEeCC--CC
Q 022967 164 DLIAATDGS-IYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANGVALSKDEDYLVVCETF--KF 240 (289)
Q Consensus 164 ~l~~~~dG~-lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~p~gl~~~~d~~~l~v~~~~--~~ 240 (289)
.-.+.|||+ |.|+... .+.-.||.+|.+++....+-.....-..=.|+|||++++++... .-
T Consensus 242 ~P~fspDG~~l~f~~~r---------------dg~~~iy~~dl~~~~~~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p 306 (425)
T COG0823 242 APAFSPDGSKLAFSSSR---------------DGSPDIYLMDLDGKNLPRLTNGFGINTSPSWSPDGSKIVFTSDRGGRP 306 (425)
T ss_pred CccCCCCCCEEEEEECC---------------CCCccEEEEcCCCCcceecccCCccccCccCCCCCCEEEEEeCCCCCc
Confidence 447788885 5554322 23457999999877755533222222233689999988776442 34
Q ss_pred eEEEEEecCCCC
Q 022967 241 RCLKYWLKGESK 252 (289)
Q Consensus 241 ~i~~~~~~~~~~ 252 (289)
.|++++.++...
T Consensus 307 ~I~~~~~~g~~~ 318 (425)
T COG0823 307 QIYLYDLEGSQV 318 (425)
T ss_pred ceEEECCCCCce
Confidence 688888887543
No 216
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=93.35 E-value=5.8 Score=35.70 Aligned_cols=198 Identities=13% Similarity=0.204 Sum_probs=98.4
Q ss_pred eEEEccCCCEEE-EecCCeEEEEe-cCCc-eEEeeeecCcCccCeEEcC-CCcEEEEeCCCceEEEe--CCC-eEEEEec
Q 022967 81 DVCVDRNGVLYT-ATRDGWIKRLH-KNGT-WENWKLIGGDTLLGITTTQ-ENEILVCDADKGLLKVT--EEG-VTVLASH 153 (289)
Q Consensus 81 ~l~~d~~g~l~v-~~~~g~i~~~~-~~g~-~~~~~~~~~~p~~gl~~d~-~g~l~v~~~~~~i~~~~--~~g-~~~~~~~ 153 (289)
++++.+||+.++ +..+..|..|+ .+.+ ...+....+... +++|-. ..+||.+.....+-.++ +-. ++.+...
T Consensus 207 ~~avS~Dgkylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~-~L~fr~gt~~lys~s~Drsvkvw~~~~~s~vetlyGH 285 (479)
T KOG0299|consen 207 TLAVSSDGKYLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVS-SLAFRKGTSELYSASADRSVKVWSIDQLSYVETLYGH 285 (479)
T ss_pred EEEEcCCCcEEEecCCCceEEEecCcccchhhccccccccee-eeeeecCccceeeeecCCceEEEehhHhHHHHHHhCC
Confidence 588889998774 44666677887 3443 334455556667 888853 23688887655544443 222 2221110
Q ss_pred cCC----ccccCccceEEc-CCC--cEEEeeCCCcc---C---cccc-----ccccceecCCCEEEEEeCCCCeEE---E
Q 022967 154 VNG----SRINLADDLIAA-TDG--SIYFSVASTKF---G---LHNW-----GLDLLEAKPHGKLLKYDPSLNETS---I 212 (289)
Q Consensus 154 ~~~----~~~~~~~~l~~~-~dG--~lyv~~~~~~~---~---~~~~-----~~~~~~~~~~g~i~~~~~~~~~~~---~ 212 (289)
..+ ..+..-..+++. .|. ++|=....++. + ..+. ...++.+..+|.|..++..+++.. .
T Consensus 286 qd~v~~IdaL~reR~vtVGgrDrT~rlwKi~eesqlifrg~~~sidcv~~In~~HfvsGSdnG~IaLWs~~KKkplf~~~ 365 (479)
T KOG0299|consen 286 QDGVLGIDALSRERCVTVGGRDRTVRLWKIPEESQLIFRGGEGSIDCVAFINDEHFVSGSDNGSIALWSLLKKKPLFTSR 365 (479)
T ss_pred ccceeeechhcccceEEeccccceeEEEeccccceeeeeCCCCCeeeEEEecccceeeccCCceEEEeeecccCceeEee
Confidence 000 000011122222 122 12211111100 0 0000 012334445676766665443321 1
Q ss_pred eeCC-------C---CCcceEEEecCCCEEEEEeCCCCeEEEEEecCCCCcceeeeec-cCCCCCCceeeCCCCC-EEEE
Q 022967 213 LLDS-------L---FFANGVALSKDEDYLVVCETFKFRCLKYWLKGESKEQTEIFVE-NLPGGPDNIKLAPDGS-FWIA 280 (289)
Q Consensus 213 ~~~~-------~---~~p~gl~~~~d~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~-~~~~~p~~i~~d~~G~-lwv~ 280 (289)
.+.+ + .+.++++.-+..+ |..+.++++.|..|.+... +.....+.. .+.++.+.|++..+|. +|+|
T Consensus 366 ~AHgv~~~~~~~~~~~Witsla~i~~sd-L~asGS~~G~vrLW~i~~g-~r~i~~l~~ls~~GfVNsl~f~~sgk~ivag 443 (479)
T KOG0299|consen 366 LAHGVIPELDPVNGNFWITSLAVIPGSD-LLASGSWSGCVRLWKIEDG-LRAINLLYSLSLVGFVNSLAFSNSGKRIVAG 443 (479)
T ss_pred ccccccCCccccccccceeeeEecccCc-eEEecCCCCceEEEEecCC-ccccceeeecccccEEEEEEEccCCCEEEEe
Confidence 1111 1 2567888888666 8888777777766665432 222333221 3457888899888886 7777
Q ss_pred E
Q 022967 281 I 281 (289)
Q Consensus 281 ~ 281 (289)
+
T Consensus 444 i 444 (479)
T KOG0299|consen 444 I 444 (479)
T ss_pred c
Confidence 5
No 217
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=93.31 E-value=1 Score=41.01 Aligned_cols=101 Identities=18% Similarity=0.240 Sum_probs=59.5
Q ss_pred cCccceEEcCCCc-EEEeeCCCccCccccccccceecCCCEEEEEeCCCCeEEEee-CCCCCcceEEEecCCCEEEEEeC
Q 022967 160 NLADDLIAATDGS-IYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILL-DSLFFANGVALSKDEDYLVVCET 237 (289)
Q Consensus 160 ~~~~~l~~~~dG~-lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~-~~~~~p~gl~~~~d~~~l~v~~~ 237 (289)
++.+.....+||+ |.++-.. .+-.||-+...+-.+..-. ........++++||.+.++-+ .
T Consensus 466 nyiRSckL~pdgrtLivGGea----------------stlsiWDLAapTprikaeltssapaCyALa~spDakvcFsc-c 528 (705)
T KOG0639|consen 466 NYIRSCKLLPDGRTLIVGGEA----------------STLSIWDLAAPTPRIKAELTSSAPACYALAISPDAKVCFSC-C 528 (705)
T ss_pred cceeeeEecCCCceEEecccc----------------ceeeeeeccCCCcchhhhcCCcchhhhhhhcCCccceeeee-c
Confidence 4667778889996 4443211 1224555544333332211 112344678999999955444 5
Q ss_pred CCCeEEEEEecCCCCcceeeeeccCCCCCCc---eeeCCCC-CEEEEEeC
Q 022967 238 FKFRCLKYWLKGESKEQTEIFVENLPGGPDN---IKLAPDG-SFWIAILQ 283 (289)
Q Consensus 238 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~---i~~d~~G-~lwv~~~~ 283 (289)
..+.|.+||+.... .+..+.+++|| |-+..|| +||.|..+
T Consensus 529 sdGnI~vwDLhnq~------~VrqfqGhtDGascIdis~dGtklWTGGlD 572 (705)
T KOG0639|consen 529 SDGNIAVWDLHNQT------LVRQFQGHTDGASCIDISKDGTKLWTGGLD 572 (705)
T ss_pred cCCcEEEEEcccce------eeecccCCCCCceeEEecCCCceeecCCCc
Confidence 55789999987542 23344566666 6677778 79988543
No 218
>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins. Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.
Probab=93.24 E-value=7 Score=36.26 Aligned_cols=156 Identities=13% Similarity=0.184 Sum_probs=74.4
Q ss_pred CCCEEEEec-----CCeEEEEecCCceEEeeeecCcCccCeEEcCCCcEEEEeCCCceEEEeCCC-eEEEEeccCCcccc
Q 022967 87 NGVLYTATR-----DGWIKRLHKNGTWENWKLIGGDTLLGITTTQENEILVCDADKGLLKVTEEG-VTVLASHVNGSRIN 160 (289)
Q Consensus 87 ~g~l~v~~~-----~g~i~~~~~~g~~~~~~~~~~~p~~gl~~d~~g~l~v~~~~~~i~~~~~~g-~~~~~~~~~~~~~~ 160 (289)
...||+-.. ....+.+|.+|.+.............+..-++|+|++... ..+..+|-.| +... ...++....
T Consensus 113 ~~gl~~~~~~~~~~~~~~~~iD~~G~Vrw~~~~~~~~~~~~~~l~nG~ll~~~~-~~~~e~D~~G~v~~~-~~l~~~~~~ 190 (477)
T PF05935_consen 113 EDGLYFVNGNDWDSSSYTYLIDNNGDVRWYLPLDSGSDNSFKQLPNGNLLIGSG-NRLYEIDLLGKVIWE-YDLPGGYYD 190 (477)
T ss_dssp TT-EEEEEETT--BEEEEEEEETTS-EEEEE-GGGT--SSEEE-TTS-EEEEEB-TEEEEE-TT--EEEE-EE--TTEE-
T ss_pred CCcEEEEeCCCCCCCceEEEECCCccEEEEEccCccccceeeEcCCCCEEEecC-CceEEEcCCCCEEEe-eecCCcccc
Confidence 446664333 4567888888987654432222220255668999988775 7799999667 3222 122322112
Q ss_pred CccceEEcCCCcEEEeeCCCccCccccccccceecCCCEEEEEeCCCCeEEEee---C----------------------
Q 022967 161 LADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILL---D---------------------- 215 (289)
Q Consensus 161 ~~~~l~~~~dG~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~---~---------------------- 215 (289)
.-.++...++|++.+............. .......|+.+| .+|++.... +
T Consensus 191 ~HHD~~~l~nGn~L~l~~~~~~~~~~~~----~~~~~D~Ivevd-~tG~vv~~wd~~d~ld~~~~~~~~~~~~~~~~~~~ 265 (477)
T PF05935_consen 191 FHHDIDELPNGNLLILASETKYVDEDKD----VDTVEDVIVEVD-PTGEVVWEWDFFDHLDPYRDTVLKPYPYGDISGSG 265 (477)
T ss_dssp B-S-EEE-TTS-EEEEEEETTEE-TS-E----E---S-EEEEE--TTS-EEEEEEGGGTS-TT--TTGGT--SSSSS-SS
T ss_pred cccccEECCCCCEEEEEeecccccCCCC----ccEecCEEEEEC-CCCCEEEEEehHHhCCcccccccccccccccccCC
Confidence 3358889999986654431111000000 001123466666 334433210 0
Q ss_pred ---CCCCcceEEEecCCCEEEEEeCCCCeEEEEEecC
Q 022967 216 ---SLFFANGVALSKDEDYLVVCETFKFRCLKYWLKG 249 (289)
Q Consensus 216 ---~~~~p~gl~~~~d~~~l~v~~~~~~~i~~~~~~~ 249 (289)
+..+.|++..++..+.|+++.+..+.|+++|..+
T Consensus 266 ~~~DW~H~Nsi~yd~~dd~iivSsR~~s~V~~Id~~t 302 (477)
T PF05935_consen 266 GGRDWLHINSIDYDPSDDSIIVSSRHQSAVIKIDYRT 302 (477)
T ss_dssp TTSBS--EEEEEEETTTTEEEEEETTT-EEEEEE-TT
T ss_pred CCCCccccCccEEeCCCCeEEEEcCcceEEEEEECCC
Confidence 0134578888886777999999888999999544
No 219
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=93.21 E-value=3.2 Score=39.51 Aligned_cols=92 Identities=20% Similarity=0.140 Sum_probs=52.4
Q ss_pred EEEccCCCEE-EEecCCeEEEEe-cCCceEEeeee-cCcCccCeEEcCCCcE---EEEeCCCceEEEe-CCC-eEEEEec
Q 022967 82 VCVDRNGVLY-TATRDGWIKRLH-KNGTWENWKLI-GGDTLLGITTTQENEI---LVCDADKGLLKVT-EEG-VTVLASH 153 (289)
Q Consensus 82 l~~d~~g~l~-v~~~~g~i~~~~-~~g~~~~~~~~-~~~p~~gl~~d~~g~l---~v~~~~~~i~~~~-~~g-~~~~~~~ 153 (289)
+++++.|.+. ++..+|++.+|| ..+..+....+ ++... .+.|+++-+. +....+..+..+| .++ .. +. .
T Consensus 111 ma~~~~g~LlAtggaD~~v~VWdi~~~~~th~fkG~gGvVs-sl~F~~~~~~~lL~sg~~D~~v~vwnl~~~~tc-l~-~ 187 (775)
T KOG0319|consen 111 MAFDPTGTLLATGGADGRVKVWDIKNGYCTHSFKGHGGVVS-SLLFHPHWNRWLLASGATDGTVRVWNLNDKRTC-LH-T 187 (775)
T ss_pred EEEcCCCceEEeccccceEEEEEeeCCEEEEEecCCCceEE-EEEeCCccchhheeecCCCceEEEEEcccCchH-HH-H
Confidence 7899987777 667899999999 44444433333 44445 8888876543 2223334455555 333 20 00 0
Q ss_pred cCCccccCccceEEcCCCcEEEee
Q 022967 154 VNGSRINLADDLIAATDGSIYFSV 177 (289)
Q Consensus 154 ~~~~~~~~~~~l~~~~dG~lyv~~ 177 (289)
.. .-.....+|++.+|+.-.++.
T Consensus 188 ~~-~H~S~vtsL~~~~d~~~~ls~ 210 (775)
T KOG0319|consen 188 MI-LHKSAVTSLAFSEDSLELLSV 210 (775)
T ss_pred HH-hhhhheeeeeeccCCceEEEe
Confidence 00 012346688888888655554
No 220
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=93.20 E-value=6.1 Score=36.49 Aligned_cols=131 Identities=12% Similarity=0.109 Sum_probs=70.6
Q ss_pred eEEEEecCCceEEeeeecCcCccCeEEcCCCcEEEEeCC---CceEEEeCCC-eEEEEeccCCccccCccceEEcCCCcE
Q 022967 98 WIKRLHKNGTWENWKLIGGDTLLGITTTQENEILVCDAD---KGLLKVTEEG-VTVLASHVNGSRINLADDLIAATDGSI 173 (289)
Q Consensus 98 ~i~~~~~~g~~~~~~~~~~~p~~gl~~d~~g~l~v~~~~---~~i~~~~~~g-~~~~~~~~~~~~~~~~~~l~~~~dG~l 173 (289)
.++.++.+|....+......|+..+.+.++|+=+.+-.+ ..+-.+|.++ .. + +-..+ --+.+.+.|.|+|
T Consensus 252 ~Lyll~t~g~s~~V~L~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~~~v-~-df~eg----pRN~~~fnp~g~i 325 (566)
T KOG2315|consen 252 TLYLLATQGESVSVPLLKEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLRGKPV-F-DFPEG----PRNTAFFNPHGNI 325 (566)
T ss_pred eEEEEEecCceEEEecCCCCCceEEEECCCCCEEEEEEecccceEEEEcCCCCEe-E-eCCCC----CccceEECCCCCE
Confidence 455665555444433332334338888888865444333 2355555445 21 1 11111 1257889999987
Q ss_pred EEeeCCCccCccccccccceecCCCEEEEEeCCCCeEEEee-CCCCCcceEEEecCCCEEEEEeCC-----CCeEEEEEe
Q 022967 174 YFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILL-DSLFFANGVALSKDEDYLVVCETF-----KFRCLKYWL 247 (289)
Q Consensus 174 yv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~-~~~~~p~gl~~~~d~~~l~v~~~~-----~~~i~~~~~ 247 (289)
.+-.+. | +-.|.|-.+|..+. +.+. ....+..-..|+|||++++.+.+. ++.+-+|+.
T Consensus 326 i~lAGF---G-----------NL~G~mEvwDv~n~--K~i~~~~a~~tt~~eW~PdGe~flTATTaPRlrvdNg~Kiwhy 389 (566)
T KOG2315|consen 326 ILLAGF---G-----------NLPGDMEVWDVPNR--KLIAKFKAANTTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHY 389 (566)
T ss_pred EEEeec---C-----------CCCCceEEEeccch--hhccccccCCceEEEEcCCCcEEEEEeccccEEecCCeEEEEe
Confidence 665442 1 22466666665532 1121 122344556899999998888764 344555665
Q ss_pred cCC
Q 022967 248 KGE 250 (289)
Q Consensus 248 ~~~ 250 (289)
.|.
T Consensus 390 tG~ 392 (566)
T KOG2315|consen 390 TGS 392 (566)
T ss_pred cCc
Confidence 664
No 221
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=93.11 E-value=2.6 Score=38.40 Aligned_cols=86 Identities=10% Similarity=0.124 Sum_probs=52.7
Q ss_pred CCEEEEEeCCCCeEEEee--CCCCCcceEEEecCCCEEEEEeCCCCeEEEEEecCCCCcceeeeeccCCCCCCceeeCCC
Q 022967 197 HGKLLKYDPSLNETSILL--DSLFFANGVALSKDEDYLVVCETFKFRCLKYWLKGESKEQTEIFVENLPGGPDNIKLAPD 274 (289)
Q Consensus 197 ~g~i~~~~~~~~~~~~~~--~~~~~p~gl~~~~d~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~ 274 (289)
.|.|..+|..+.....-+ ....-..||+|+|.+..|+|+-....+|+.||........+-.+-.. -..+++.++
T Consensus 186 ~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l~y~~P----lstvaf~~~ 261 (673)
T KOG4378|consen 186 KGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQASTDRLTYSHP----LSTVAFSEC 261 (673)
T ss_pred CCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEEEecccceEEEeecccccccceeeecCC----cceeeecCC
Confidence 356666676532221111 12233579999999998999988889999999875544333332211 134888888
Q ss_pred CCEEEEEe-Cccc
Q 022967 275 GSFWIAIL-QVFI 286 (289)
Q Consensus 275 G~lwv~~~-~g~i 286 (289)
|.+.++.. .|.+
T Consensus 262 G~~L~aG~s~G~~ 274 (673)
T KOG4378|consen 262 GTYLCAGNSKGEL 274 (673)
T ss_pred ceEEEeecCCceE
Confidence 87666654 4443
No 222
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=93.07 E-value=0.59 Score=26.81 Aligned_cols=41 Identities=22% Similarity=0.298 Sum_probs=27.7
Q ss_pred CCC-cEEEeeCCCccCccccccccceecCCCEEEEEeCCCCeEEEeeCCCCCcceEEEe
Q 022967 169 TDG-SIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANGVALS 226 (289)
Q Consensus 169 ~dG-~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~p~gl~~~ 226 (289)
|+| +||+++.. .+.|..+|+.+++......-...|.+++++
T Consensus 1 pd~~~lyv~~~~-----------------~~~v~~id~~~~~~~~~i~vg~~P~~i~~~ 42 (42)
T TIGR02276 1 PDGTKLYVTNSG-----------------SNTVSVIDTATNKVIATIPVGGYPFGVAVS 42 (42)
T ss_pred CCCCEEEEEeCC-----------------CCEEEEEECCCCeEEEEEECCCCCceEEeC
Confidence 344 58998743 467888998776654444445778888764
No 223
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=93.05 E-value=6.7 Score=35.52 Aligned_cols=138 Identities=13% Similarity=0.191 Sum_probs=80.1
Q ss_pred ccCeEEcCCCcEEEEeCCCceEEEe-CCC--eEEEEeccCCccccCccceEEcCCCcEEEeeCCCccCccccccccceec
Q 022967 119 LLGITTTQENEILVCDADKGLLKVT-EEG--VTVLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAK 195 (289)
Q Consensus 119 ~~gl~~d~~g~l~v~~~~~~i~~~~-~~g--~~~~~~~~~~~~~~~~~~l~~~~dG~lyv~~~~~~~~~~~~~~~~~~~~ 195 (289)
+|++++..+|.+.++....|..|+- .+| +..+... .+ ....|....+|+..++.+
T Consensus 238 VT~L~Wn~~G~~LatG~~~G~~riw~~~G~l~~tl~~H-kg----PI~slKWnk~G~yilS~~----------------- 295 (524)
T KOG0273|consen 238 VTSLDWNNDGTLLATGSEDGEARIWNKDGNLISTLGQH-KG----PIFSLKWNKKGTYILSGG----------------- 295 (524)
T ss_pred cceEEecCCCCeEEEeecCcEEEEEecCchhhhhhhcc-CC----ceEEEEEcCCCCEEEecc-----------------
Confidence 3489999999999887777776665 666 4444321 11 245788888887555532
Q ss_pred CCCEEEEEeCCCCeEEEeeCCCCCc-ceEEEecCCCEEEEEeCCCCeEEEEEecCCCCcceeeeeccCCCCCCceeeCCC
Q 022967 196 PHGKLLKYDPSLNETSILLDSLFFA-NGVALSKDEDYLVVCETFKFRCLKYWLKGESKEQTEIFVENLPGGPDNIKLAPD 274 (289)
Q Consensus 196 ~~g~i~~~~~~~~~~~~~~~~~~~p-~gl~~~~d~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~ 274 (289)
..+.+..+|..+++......--..| -.+.|-.+. -+++......|++|.+..+.- ...|.. ..+....|..+..
T Consensus 296 vD~ttilwd~~~g~~~q~f~~~s~~~lDVdW~~~~--~F~ts~td~~i~V~kv~~~~P--~~t~~G-H~g~V~alk~n~t 370 (524)
T KOG0273|consen 296 VDGTTILWDAHTGTVKQQFEFHSAPALDVDWQSND--EFATSSTDGCIHVCKVGEDRP--VKTFIG-HHGEVNALKWNPT 370 (524)
T ss_pred CCccEEEEeccCceEEEeeeeccCCccceEEecCc--eEeecCCCceEEEEEecCCCc--ceeeec-ccCceEEEEECCC
Confidence 2467888888877766543322233 223443222 344445567788887765422 122332 2234455666666
Q ss_pred CCEEEEEeC
Q 022967 275 GSFWIAILQ 283 (289)
Q Consensus 275 G~lwv~~~~ 283 (289)
|.|..++.+
T Consensus 371 g~LLaS~Sd 379 (524)
T KOG0273|consen 371 GSLLASCSD 379 (524)
T ss_pred CceEEEecC
Confidence 666555443
No 224
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=92.99 E-value=4.9 Score=33.80 Aligned_cols=142 Identities=11% Similarity=0.040 Sum_probs=76.5
Q ss_pred cceEEEccC-CCEEEEecCCeEEEEe-cCCceEEeeeecCcCccCeEEcCCCcEEEEeCCC-----c-eEEEe-C--C--
Q 022967 79 PEDVCVDRN-GVLYTATRDGWIKRLH-KNGTWENWKLIGGDTLLGITTTQENEILVCDADK-----G-LLKVT-E--E-- 145 (289)
Q Consensus 79 p~~l~~d~~-g~l~v~~~~g~i~~~~-~~g~~~~~~~~~~~p~~gl~~d~~g~l~v~~~~~-----~-i~~~~-~--~-- 145 (289)
-+++.+|.+ ..+..++.+..+..|| ++|+.....+...... .+.|+.+|++.++..++ + |..++ . +
T Consensus 55 vW~~Did~~s~~liTGSAD~t~kLWDv~tGk~la~~k~~~~Vk-~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~ 133 (327)
T KOG0643|consen 55 VWCCDIDWDSKHLITGSADQTAKLWDVETGKQLATWKTNSPVK-RVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSD 133 (327)
T ss_pred EEEEEecCCcceeeeccccceeEEEEcCCCcEEEEeecCCeeE-EEeeccCCcEEEEEehhhcCcceEEEEEEccCChhh
Confidence 445666653 3455667777777887 6776554444333344 78888888765543221 1 33333 1 1
Q ss_pred --CeEEEEeccCCccccCccceEEcCCCcEEEeeCCCccCccccccccceecCCCEEEEEeCCCCeEEEee--CCCCCcc
Q 022967 146 --GVTVLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILL--DSLFFAN 221 (289)
Q Consensus 146 --g~~~~~~~~~~~~~~~~~~l~~~~dG~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~--~~~~~p~ 221 (289)
+-+++.. +.-. -..+....+++-|...|+-. ..|.|-+||..+|...+-. ......+
T Consensus 134 ~~s~ep~~k-I~t~-~skit~a~Wg~l~~~ii~Gh-----------------e~G~is~~da~~g~~~v~s~~~h~~~In 194 (327)
T KOG0643|consen 134 IDSEEPYLK-IPTP-DSKITSALWGPLGETIIAGH-----------------EDGSISIYDARTGKELVDSDEEHSSKIN 194 (327)
T ss_pred hcccCceEE-ecCC-ccceeeeeecccCCEEEEec-----------------CCCcEEEEEcccCceeeechhhhccccc
Confidence 1111111 0000 12345566777776555432 3588999999876432221 2234567
Q ss_pred eEEEecCCCEEEEEeCCCCe
Q 022967 222 GVALSKDEDYLVVCETFKFR 241 (289)
Q Consensus 222 gl~~~~d~~~l~v~~~~~~~ 241 (289)
.|.+++|.. .+++.+....
T Consensus 195 d~q~s~d~T-~FiT~s~Dtt 213 (327)
T KOG0643|consen 195 DLQFSRDRT-YFITGSKDTT 213 (327)
T ss_pred cccccCCcc-eEEecccCcc
Confidence 889999887 5565554333
No 225
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=92.91 E-value=5 Score=33.75 Aligned_cols=154 Identities=13% Similarity=0.153 Sum_probs=91.8
Q ss_pred cCCcceEEEccC-CCEEEEe-cCCeEEEEecC-C-ceEE---eeeecCcCccCeEEcCCCcEEEEeCCCceEEEe--CCC
Q 022967 76 LNGPEDVCVDRN-GVLYTAT-RDGWIKRLHKN-G-TWEN---WKLIGGDTLLGITTTQENEILVCDADKGLLKVT--EEG 146 (289)
Q Consensus 76 ~~~p~~l~~d~~-g~l~v~~-~~g~i~~~~~~-g-~~~~---~~~~~~~p~~gl~~d~~g~l~v~~~~~~i~~~~--~~g 146 (289)
..+-..+++.|. |+++.+. .+..|..++.. + .+.. +.....+..-.+|+.+.|++..+........+. .++
T Consensus 14 ~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~t~~Iw~k~~~ 93 (312)
T KOG0645|consen 14 KDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDATVVIWKKEDG 93 (312)
T ss_pred CCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeeccceEEEeecCCC
Confidence 445677899886 8876554 55666666643 2 2221 112223322289999999966654444433333 345
Q ss_pred -eEEEEeccCCccccCccceEEcCCCcEEEeeCCCccCccccccccceecCCCEEEEEeCCCCeEEEe---eCCCCCcce
Q 022967 147 -VTVLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSIL---LDSLFFANG 222 (289)
Q Consensus 147 -~~~~~~~~~~~~~~~~~~l~~~~dG~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~---~~~~~~p~g 222 (289)
++.+.. ..|.. +....+++.++|++..+-.. ...-.|+..|.+ ++++.. .+...--..
T Consensus 94 efecv~~-lEGHE-nEVK~Vaws~sG~~LATCSR---------------DKSVWiWe~ded-dEfec~aVL~~HtqDVK~ 155 (312)
T KOG0645|consen 94 EFECVAT-LEGHE-NEVKCVAWSASGNYLATCSR---------------DKSVWIWEIDED-DEFECIAVLQEHTQDVKH 155 (312)
T ss_pred ceeEEee-eeccc-cceeEEEEcCCCCEEEEeeC---------------CCeEEEEEecCC-CcEEEEeeeccccccccE
Confidence 665433 22221 35678999999987665432 122356666633 565543 233444567
Q ss_pred EEEecCCCEEEEEeCCCCeEEEEEec
Q 022967 223 VALSKDEDYLVVCETFKFRCLKYWLK 248 (289)
Q Consensus 223 l~~~~d~~~l~v~~~~~~~i~~~~~~ 248 (289)
+.|+|... |+++.+..+.|..|+..
T Consensus 156 V~WHPt~d-lL~S~SYDnTIk~~~~~ 180 (312)
T KOG0645|consen 156 VIWHPTED-LLFSCSYDNTIKVYRDE 180 (312)
T ss_pred EEEcCCcc-eeEEeccCCeEEEEeec
Confidence 88999777 88888888888877654
No 226
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=92.86 E-value=4.9 Score=35.75 Aligned_cols=124 Identities=13% Similarity=0.150 Sum_probs=68.9
Q ss_pred cCCeEEEEe-cCCceEEeeeecCcCccCeEEcCCC-cEEEEeCCCceEEEeCCC--eEEEEeccCCcc-ccCccceEEcC
Q 022967 95 RDGWIKRLH-KNGTWENWKLIGGDTLLGITTTQEN-EILVCDADKGLLKVTEEG--VTVLASHVNGSR-INLADDLIAAT 169 (289)
Q Consensus 95 ~~g~i~~~~-~~g~~~~~~~~~~~p~~gl~~d~~g-~l~v~~~~~~i~~~~~~g--~~~~~~~~~~~~-~~~~~~l~~~~ 169 (289)
.++.|..|| ..+........++... .+....+| .|..+...+.+-.+|-.+ +..... ..+.. -.-.+.+.+.|
T Consensus 320 ~DkkvRfwD~Rs~~~~~sv~~gg~vt-Sl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~s-A~g~k~asDwtrvvfSp 397 (459)
T KOG0288|consen 320 FDKKVRFWDIRSADKTRSVPLGGRVT-SLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFS-AEGFKCASDWTRVVFSP 397 (459)
T ss_pred cccceEEEeccCCceeeEeecCccee-eEeeccCCeEEeeecCCCceeeeecccccEEEEee-ccccccccccceeEECC
Confidence 555666666 3333332233334444 66666666 365565545566666222 332221 11111 11245678888
Q ss_pred CCcEEEeeCCCccCccccccccceecCCCEEEEEeCCCCeEEEeeCCCC---CcceEEEecCCCEEEEEeC
Q 022967 170 DGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLF---FANGVALSKDEDYLVVCET 237 (289)
Q Consensus 170 dG~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~---~p~gl~~~~d~~~l~v~~~ 237 (289)
+|.. +..++ ..|.|+.++..+++.+....... ....++|++.|..|.-++.
T Consensus 398 d~~Y-vaAGS----------------~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~Llsadk 451 (459)
T KOG0288|consen 398 DGSY-VAAGS----------------ADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPSGSGLLSADK 451 (459)
T ss_pred CCce-eeecc----------------CCCcEEEEEccCceEEEEeccCCCCcceEEEEEcCCCchhhcccC
Confidence 8864 44333 46889999999888887654322 2456789998887766654
No 227
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=92.58 E-value=5.2 Score=38.38 Aligned_cols=148 Identities=14% Similarity=0.095 Sum_probs=83.8
Q ss_pred CcceEEEccCCCEE-EEecCCeEEEEecCC-ceEEeeeecCcCccCeEEcCCCcEEEEeCCC-ceEEEe-CCC---eEEE
Q 022967 78 GPEDVCVDRNGVLY-TATRDGWIKRLHKNG-TWENWKLIGGDTLLGITTTQENEILVCDADK-GLLKVT-EEG---VTVL 150 (289)
Q Consensus 78 ~p~~l~~d~~g~l~-v~~~~g~i~~~~~~g-~~~~~~~~~~~p~~gl~~d~~g~l~v~~~~~-~i~~~~-~~g---~~~~ 150 (289)
.--++.+.|||.+. ++.-++.+..|--|. ++-...-+...|...|-..+|+++.++.... .+-.+. +-| ...+
T Consensus 510 dvL~v~~Spdgk~LaVsLLdnTVkVyflDtlKFflsLYGHkLPV~smDIS~DSklivTgSADKnVKiWGLdFGDCHKS~f 589 (888)
T KOG0306|consen 510 DVLCVSVSPDGKLLAVSLLDNTVKVYFLDTLKFFLSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIWGLDFGDCHKSFF 589 (888)
T ss_pred cEEEEEEcCCCcEEEEEeccCeEEEEEecceeeeeeecccccceeEEeccCCcCeEEeccCCCceEEeccccchhhhhhh
Confidence 34567788888877 666677666654222 2211111123354366666788888875433 232222 223 2222
Q ss_pred EeccCCccccCccceEEcCCCcEEEeeCCCccCccccccccceecCCCEEEEEeCCCCe-EEEeeCCCCCcceEEEecCC
Q 022967 151 ASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNE-TSILLDSLFFANGVALSKDE 229 (289)
Q Consensus 151 ~~~~~~~~~~~~~~l~~~~dG~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~-~~~~~~~~~~p~gl~~~~d~ 229 (289)
+.+ -+...+.+-|+-.++|+.+. .+.+-++|.+.-+ +..+.....-..-++++|+|
T Consensus 590 AHd------DSvm~V~F~P~~~~FFt~gK-----------------D~kvKqWDg~kFe~iq~L~~H~~ev~cLav~~~G 646 (888)
T KOG0306|consen 590 AHD------DSVMSVQFLPKTHLFFTCGK-----------------DGKVKQWDGEKFEEIQKLDGHHSEVWCLAVSPNG 646 (888)
T ss_pred ccc------CceeEEEEcccceeEEEecC-----------------cceEEeechhhhhhheeeccchheeeeeEEcCCC
Confidence 211 13456788898888888654 4677778765211 22222333345668899999
Q ss_pred CEEEEEeCCCCeEEEEEecC
Q 022967 230 DYLVVCETFKFRCLKYWLKG 249 (289)
Q Consensus 230 ~~l~v~~~~~~~i~~~~~~~ 249 (289)
+ ..|+.+..+.|..|....
T Consensus 647 ~-~vvs~shD~sIRlwE~td 665 (888)
T KOG0306|consen 647 S-FVVSSSHDKSIRLWERTD 665 (888)
T ss_pred C-eEEeccCCceeEeeeccC
Confidence 8 566666667787776543
No 228
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=92.57 E-value=0.79 Score=39.72 Aligned_cols=50 Identities=18% Similarity=0.117 Sum_probs=33.1
Q ss_pred EEEEEeCCCCeEEEeeCCCCCcceEEEecCCCEEEEEeCCCCeEEEEEecCC
Q 022967 199 KLLKYDPSLNETSILLDSLFFANGVALSKDEDYLVVCETFKFRCLKYWLKGE 250 (289)
Q Consensus 199 ~i~~~~~~~~~~~~~~~~~~~p~gl~~~~d~~~l~v~~~~~~~i~~~~~~~~ 250 (289)
.|-..+..++++.....+ +-.|+|--.-.+.|.|+.+..+.|..||+...
T Consensus 341 TikvW~~st~efvRtl~g--HkRGIAClQYr~rlvVSGSSDntIRlwdi~~G 390 (499)
T KOG0281|consen 341 TIKVWSTSTCEFVRTLNG--HKRGIACLQYRDRLVVSGSSDNTIRLWDIECG 390 (499)
T ss_pred eEEEEeccceeeehhhhc--ccccceehhccCeEEEecCCCceEEEEecccc
Confidence 455566666665443332 34667655545569999888999999998743
No 229
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=92.54 E-value=5.7 Score=33.44 Aligned_cols=112 Identities=13% Similarity=0.088 Sum_probs=63.2
Q ss_pred cCccCeEEcCC-CcEEEEeCCCc-eEEEeCC-C--eEEEEeccCCccccCccceEEcCCCcEEEeeCCCccCcccccccc
Q 022967 117 DTLLGITTTQE-NEILVCDADKG-LLKVTEE-G--VTVLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDL 191 (289)
Q Consensus 117 ~p~~gl~~d~~-g~l~v~~~~~~-i~~~~~~-g--~~~~~~~~~~~~~~~~~~l~~~~dG~lyv~~~~~~~~~~~~~~~~ 191 (289)
+.. .+++++. |.++.+-...+ |..++.. + .... ....+.-.+..+.++..|.|+ |++..+
T Consensus 16 r~W-~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck-~vld~~hkrsVRsvAwsp~g~-~La~aS------------ 80 (312)
T KOG0645|consen 16 RVW-SVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCK-TVLDDGHKRSVRSVAWSPHGR-YLASAS------------ 80 (312)
T ss_pred cEE-EEEeccCCceEEEeecCCceEEEEecCCCCcEEEE-EeccccchheeeeeeecCCCc-EEEEee------------
Confidence 445 7888876 66655543443 4334422 3 2211 112333345788999999999 444443
Q ss_pred ceecCCCEEEEEeCCCCeEEEee--CC-CCCcceEEEecCCCEEEEEeCCCCeEEEEEec
Q 022967 192 LEAKPHGKLLKYDPSLNETSILL--DS-LFFANGVALSKDEDYLVVCETFKFRCLKYWLK 248 (289)
Q Consensus 192 ~~~~~~g~i~~~~~~~~~~~~~~--~~-~~~p~gl~~~~d~~~l~v~~~~~~~i~~~~~~ 248 (289)
..+.+..+....++++.+. ++ -.--..++|+++|++|- +.+....|+++.++
T Consensus 81 ----FD~t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~~LA-TCSRDKSVWiWe~d 135 (312)
T KOG0645|consen 81 ----FDATVVIWKKEDGEFECVATLEGHENEVKCVAWSASGNYLA-TCSRDKSVWIWEID 135 (312)
T ss_pred ----ccceEEEeecCCCceeEEeeeeccccceeEEEEcCCCCEEE-EeeCCCeEEEEEec
Confidence 1233444433346666543 23 23346789999999544 44556778887766
No 230
>COG4247 Phy 3-phytase (myo-inositol-hexaphosphate 3-phosphohydrolase) [Lipid metabolism]
Probab=92.41 E-value=5.8 Score=33.22 Aligned_cols=23 Identities=13% Similarity=0.356 Sum_probs=19.2
Q ss_pred CeEEc-CCCcEEEEeCCCceEEEe
Q 022967 121 GITTT-QENEILVCDADKGLLKVT 143 (289)
Q Consensus 121 gl~~d-~~g~l~v~~~~~~i~~~~ 143 (289)
|+..| ..|.|||+...-.||++.
T Consensus 209 G~VaDdEtG~LYIaeEdvaiWK~~ 232 (364)
T COG4247 209 GMVADDETGFLYIAEEDVAIWKYE 232 (364)
T ss_pred ceeeccccceEEEeeccceeeecc
Confidence 77766 568999999878899998
No 231
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=92.32 E-value=1.6 Score=39.68 Aligned_cols=93 Identities=19% Similarity=0.179 Sum_probs=57.1
Q ss_pred EEecCCeEEEEecCCceEEe--eeecCcCccCeEEcCCCc-EEEEeC-CCceEEEe-CCC--eEEEEeccCCccccCccc
Q 022967 92 TATRDGWIKRLHKNGTWENW--KLIGGDTLLGITTTQENE-ILVCDA-DKGLLKVT-EEG--VTVLASHVNGSRINLADD 164 (289)
Q Consensus 92 v~~~~g~i~~~~~~g~~~~~--~~~~~~p~~gl~~d~~g~-l~v~~~-~~~i~~~~-~~g--~~~~~~~~~~~~~~~~~~ 164 (289)
++..+|.|..||..|....+ ......|..||.|.+... |+|+-. +..|+.+| ... ...++... -...
T Consensus 182 ~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l~y~~------Plst 255 (673)
T KOG4378|consen 182 IASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQASTDRLTYSH------PLST 255 (673)
T ss_pred eeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEEEecccceEEEeecccccccceeeecC------Ccce
Confidence 44466777788766654333 222345555999987664 555542 25788888 322 44443321 2357
Q ss_pred eEEcCCCcEEEeeCCCccCccccccccceecCCCEEEEEeCCC
Q 022967 165 LIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSL 207 (289)
Q Consensus 165 l~~~~dG~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~ 207 (289)
+++.++|.+.++..+ .|+|+.||...
T Consensus 256 vaf~~~G~~L~aG~s-----------------~G~~i~YD~R~ 281 (673)
T KOG4378|consen 256 VAFSECGTYLCAGNS-----------------KGELIAYDMRS 281 (673)
T ss_pred eeecCCceEEEeecC-----------------CceEEEEeccc
Confidence 899999976665433 58899999764
No 232
>KOG4328 consensus WD40 protein [Function unknown]
Probab=92.26 E-value=2.6 Score=37.83 Aligned_cols=148 Identities=13% Similarity=0.075 Sum_probs=80.1
Q ss_pred cceEEEcc-CC-CEE-EEecCCeEEEEecCCc------eEEeeeecCcCccCeEEcCCC--cEEEEeCCCceEEE-e-CC
Q 022967 79 PEDVCVDR-NG-VLY-TATRDGWIKRLHKNGT------WENWKLIGGDTLLGITTTQEN--EILVCDADKGLLKV-T-EE 145 (289)
Q Consensus 79 p~~l~~d~-~g-~l~-v~~~~g~i~~~~~~g~------~~~~~~~~~~p~~gl~~d~~g--~l~v~~~~~~i~~~-~-~~ 145 (289)
-.++++.| .. .+. +|+..|.|-.|+-+++ +..+. ..+.|+++|.|.+.+ .+|-+.. .|..|+ | ..
T Consensus 189 it~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~-~hs~~Vs~l~F~P~n~s~i~ssSy-DGtiR~~D~~~ 266 (498)
T KOG4328|consen 189 ITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFT-PHSGPVSGLKFSPANTSQIYSSSY-DGTIRLQDFEG 266 (498)
T ss_pred eEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEec-cCCccccceEecCCChhheeeecc-Cceeeeeeecc
Confidence 45577777 22 454 7777788888874221 11222 223344489888654 4666654 554444 4 44
Q ss_pred C-eEEEEeccCCccccCccceEEcC-CCcEEEeeCCCccCccccccccceecCCCEEEEEe--CCCCeEEEeeCCCCCcc
Q 022967 146 G-VTVLASHVNGSRINLADDLIAAT-DGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYD--PSLNETSILLDSLFFAN 221 (289)
Q Consensus 146 g-~~~~~~~~~~~~~~~~~~l~~~~-dG~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~--~~~~~~~~~~~~~~~p~ 221 (289)
+ .+.+..... ......++.+.. ++.+++.+.- |.+-.+| .++.+.+.+.-.-....
T Consensus 267 ~i~e~v~s~~~--d~~~fs~~d~~~e~~~vl~~~~~------------------G~f~~iD~R~~~s~~~~~~lh~kKI~ 326 (498)
T KOG4328|consen 267 NISEEVLSLDT--DNIWFSSLDFSAESRSVLFGDNV------------------GNFNVIDLRTDGSEYENLRLHKKKIT 326 (498)
T ss_pred hhhHHHhhcCc--cceeeeeccccCCCccEEEeecc------------------cceEEEEeecCCccchhhhhhhcccc
Confidence 4 433322110 111233455554 4567776542 3222333 33333333222223568
Q ss_pred eEEEecCCCEEEEEeCCCCeEEEEEec
Q 022967 222 GVALSKDEDYLVVCETFKFRCLKYWLK 248 (289)
Q Consensus 222 gl~~~~d~~~l~v~~~~~~~i~~~~~~ 248 (289)
+++++|...+++.+....+...+||+.
T Consensus 327 sv~~NP~~p~~laT~s~D~T~kIWD~R 353 (498)
T KOG4328|consen 327 SVALNPVCPWFLATASLDQTAKIWDLR 353 (498)
T ss_pred eeecCCCCchheeecccCcceeeeehh
Confidence 899999998888888877778788864
No 233
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.26 E-value=11 Score=37.17 Aligned_cols=126 Identities=11% Similarity=0.164 Sum_probs=68.1
Q ss_pred cCCcceEEEccCCCEEEEe-cCCeEEEEecCC--ceEEeeeecCcCccCeEEcCCCcEEEEeCCCceEEEeCCCeEEEEe
Q 022967 76 LNGPEDVCVDRNGVLYTAT-RDGWIKRLHKNG--TWENWKLIGGDTLLGITTTQENEILVCDADKGLLKVTEEGVTVLAS 152 (289)
Q Consensus 76 ~~~p~~l~~d~~g~l~v~~-~~g~i~~~~~~g--~~~~~~~~~~~p~~gl~~d~~g~l~v~~~~~~i~~~~~~g~~~~~~ 152 (289)
.....++.++|..++.++. .++.|.+||.+. .+..+.....+-. -++.++..+||.+.++.|+..+- -
T Consensus 250 ~nnVssvlfhp~q~lIlSnsEDksirVwDm~kRt~v~tfrrendRFW-~laahP~lNLfAAgHDsGm~VFk--------l 320 (1202)
T KOG0292|consen 250 YNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKRTSVQTFRRENDRFW-ILAAHPELNLFAAGHDSGMIVFK--------L 320 (1202)
T ss_pred cCCcceEEecCccceeEecCCCccEEEEecccccceeeeeccCCeEE-EEEecCCcceeeeecCCceEEEE--------E
Confidence 4556677888866776555 566777777332 3444433334444 56777777777776655544332 1
Q ss_pred ccCCccccCccceEEcCCCcEEEeeCCCccCccccccccceecCCCEEEEEeCCCCeEEEee---CC---CCCcceEEEe
Q 022967 153 HVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILL---DS---LFFANGVALS 226 (289)
Q Consensus 153 ~~~~~~~~~~~~l~~~~dG~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~---~~---~~~p~gl~~~ 226 (289)
. +..-..++..++-+|+-+ -.|..+|-.+.+-..+. .. ...|..+.++
T Consensus 321 e------RErpa~~v~~n~LfYvkd--------------------~~i~~~d~~t~~d~~v~~lr~~g~~~~~~~smsYN 374 (1202)
T KOG0292|consen 321 E------RERPAYAVNGNGLFYVKD--------------------RFIRSYDLRTQKDTAVASLRRPGTLWQPPRSLSYN 374 (1202)
T ss_pred c------ccCceEEEcCCEEEEEcc--------------------ceEEeeeccccccceeEeccCCCcccCCcceeeec
Confidence 0 011133455455566653 24666665542222221 11 2335678888
Q ss_pred cCCCEEEEEe
Q 022967 227 KDEDYLVVCE 236 (289)
Q Consensus 227 ~d~~~l~v~~ 236 (289)
|..+.+.++.
T Consensus 375 pae~~vlics 384 (1202)
T KOG0292|consen 375 PAENAVLICS 384 (1202)
T ss_pred cccCeEEEEe
Confidence 8777677763
No 234
>PF14269 Arylsulfotran_2: Arylsulfotransferase (ASST)
Probab=91.94 E-value=7.7 Score=33.58 Aligned_cols=121 Identities=12% Similarity=0.159 Sum_probs=63.8
Q ss_pred CeEEcCCCcEEEEeCC-CceEEEe-CCC-eEEEEeccCC-------ccccCccceEEc----CCCcEEEeeCCCccCccc
Q 022967 121 GITTTQENEILVCDAD-KGLLKVT-EEG-VTVLASHVNG-------SRINLADDLIAA----TDGSIYFSVASTKFGLHN 186 (289)
Q Consensus 121 gl~~d~~g~l~v~~~~-~~i~~~~-~~g-~~~~~~~~~~-------~~~~~~~~l~~~----~dG~lyv~~~~~~~~~~~ 186 (289)
++..+.+|+++|+.+. ..|+.++ .+| +........+ ..+..-.+..+- .++.|-+-|.... .
T Consensus 148 sV~~~~~G~yLiS~R~~~~i~~I~~~tG~I~W~lgG~~~~df~~~~~~f~~QHdar~~~~~~~~~~IslFDN~~~-~--- 223 (299)
T PF14269_consen 148 SVDKDDDGDYLISSRNTSTIYKIDPSTGKIIWRLGGKRNSDFTLPATNFSWQHDARFLNESNDDGTISLFDNANS-D--- 223 (299)
T ss_pred eeeecCCccEEEEecccCEEEEEECCCCcEEEEeCCCCCCcccccCCcEeeccCCEEeccCCCCCEEEEEcCCCC-C---
Confidence 7777788999888765 5699999 778 5443322101 112222233333 4556555554200 0
Q ss_pred cccccceecCCCEEEEEeCCCCeEEEeeCCCCCcce--------EEEecCCCEEEEEeCCCCeEEEEEecC
Q 022967 187 WGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANG--------VALSKDEDYLVVCETFKFRCLKYWLKG 249 (289)
Q Consensus 187 ~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~p~g--------l~~~~d~~~l~v~~~~~~~i~~~~~~~ 249 (289)
........+.++.+|+.+.+.+.+..-...+.+ +..-|+|+ ++|+.....++..|+.+|
T Consensus 224 ---~~~~~~s~~~v~~ld~~~~~~~~~~~~~~~~~~~~s~~~G~~Q~L~nGn-~li~~g~~g~~~E~~~~G 290 (299)
T PF14269_consen 224 ---FNGTEPSRGLVLELDPETMTVTLVREYSDHPDGFYSPSQGSAQRLPNGN-VLIGWGNNGRISEFTPDG 290 (299)
T ss_pred ---CCCCcCCCceEEEEECCCCEEEEEEEeecCCCcccccCCCcceECCCCC-EEEecCCCceEEEECCCC
Confidence 011223457888899886655544321112222 23344555 666666666666666554
No 235
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=91.79 E-value=9.6 Score=34.38 Aligned_cols=73 Identities=18% Similarity=0.205 Sum_probs=46.9
Q ss_pred CccceEEcCCCcEEEeeCCCccCccccccccceecCCCEEEEEeCCCCeEEEee--CCCCCcceEEEecCCCEEEEEeCC
Q 022967 161 LADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILL--DSLFFANGVALSKDEDYLVVCETF 238 (289)
Q Consensus 161 ~~~~l~~~~dG~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~--~~~~~p~gl~~~~d~~~l~v~~~~ 238 (289)
..+++++-+.-.|+.+... .+.-++|.+...-..+..+. .-..+.|+|+|+.+|++++++-..
T Consensus 382 Witsla~i~~sdL~asGS~---------------~G~vrLW~i~~g~r~i~~l~~ls~~GfVNsl~f~~sgk~ivagiGk 446 (479)
T KOG0299|consen 382 WITSLAVIPGSDLLASGSW---------------SGCVRLWKIEDGLRAINLLYSLSLVGFVNSLAFSNSGKRIVAGIGK 446 (479)
T ss_pred ceeeeEecccCceEEecCC---------------CCceEEEEecCCccccceeeecccccEEEEEEEccCCCEEEEeccc
Confidence 4567777776666665332 12336677754322343332 224467899999999999998777
Q ss_pred CCeEEEEEec
Q 022967 239 KFRCLKYWLK 248 (289)
Q Consensus 239 ~~~i~~~~~~ 248 (289)
.+++-||+..
T Consensus 447 EhRlGRW~~~ 456 (479)
T KOG0299|consen 447 EHRLGRWWCL 456 (479)
T ss_pred ccccceeeEe
Confidence 7889888764
No 236
>PF07494 Reg_prop: Two component regulator propeller; InterPro: IPR011110 A large group of two component regulator proteins appear to have the same N-terminal structure of 14 tandem repeats. These repeats show homology to members of IPR002372 from INTERPRO and IPR001680 from INTERPRO indicating that they are likely to form a beta-propeller. This family has been built with artificially high cut-offs in order to avoid overlaps with other beta-propeller families. The fourteen repeats are likely to form two propellers; it is not clear if these structures are likely to recruit other proteins or interact with DNA.; PDB: 3V9F_D 3VA6_B 3OTT_B 4A2M_D 4A2L_B.
Probab=91.69 E-value=0.26 Score=24.97 Aligned_cols=18 Identities=17% Similarity=0.399 Sum_probs=14.8
Q ss_pred cCccceEEcCCCcEEEee
Q 022967 160 NLADDLIAATDGSIYFSV 177 (289)
Q Consensus 160 ~~~~~l~~~~dG~lyv~~ 177 (289)
+...+|..|++|+|||++
T Consensus 5 n~I~~i~~D~~G~lWigT 22 (24)
T PF07494_consen 5 NNIYSIYEDSDGNLWIGT 22 (24)
T ss_dssp SCEEEEEE-TTSCEEEEE
T ss_pred CeEEEEEEcCCcCEEEEe
Confidence 467799999999999986
No 237
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=91.65 E-value=9 Score=33.78 Aligned_cols=152 Identities=14% Similarity=0.179 Sum_probs=96.2
Q ss_pred cCCcceEEEccCCCEEE-EecCCeEEEEe-cCC---ceEEe--------------------e--eecCcCccCeEEcCCC
Q 022967 76 LNGPEDVCVDRNGVLYT-ATRDGWIKRLH-KNG---TWENW--------------------K--LIGGDTLLGITTTQEN 128 (289)
Q Consensus 76 ~~~p~~l~~d~~g~l~v-~~~~g~i~~~~-~~g---~~~~~--------------------~--~~~~~p~~gl~~d~~g 128 (289)
-...+++.++++|..++ ++.+..|-.++ ... ..+.. . .+...|+..+.+.+.+
T Consensus 193 k~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d~~ 272 (423)
T KOG0313|consen 193 KRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSDAT 272 (423)
T ss_pred ccceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccccceeeEEEcCCC
Confidence 34567889999998884 45677666665 110 00000 0 0011233367777767
Q ss_pred cEEEEeCCCceEEEe-CCC--eEEEEeccCCccccCccceEEcCCCcEEEeeCCCccCccccccccceecCCCEEEEEeC
Q 022967 129 EILVCDADKGLLKVT-EEG--VTVLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDP 205 (289)
Q Consensus 129 ~l~v~~~~~~i~~~~-~~g--~~~~~~~~~~~~~~~~~~l~~~~dG~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~ 205 (289)
.+|-+..++.|.++| ..| +..+... ...+.+...+.-+|.++..+ ..-+..+||
T Consensus 273 v~yS~SwDHTIk~WDletg~~~~~~~~~------ksl~~i~~~~~~~Ll~~gss-----------------dr~irl~DP 329 (423)
T KOG0313|consen 273 VIYSVSWDHTIKVWDLETGGLKSTLTTN------KSLNCISYSPLSKLLASGSS-----------------DRHIRLWDP 329 (423)
T ss_pred ceEeecccceEEEEEeecccceeeeecC------cceeEeecccccceeeecCC-----------------CCceeecCC
Confidence 788777778888888 544 4433221 24567777787777776543 123556788
Q ss_pred CCCeEEE----eeCCCCCcceEEEecCCCEEEEEeCCCCeEEEEEecCC
Q 022967 206 SLNETSI----LLDSLFFANGVALSKDEDYLVVCETFKFRCLKYWLKGE 250 (289)
Q Consensus 206 ~~~~~~~----~~~~~~~p~gl~~~~d~~~l~v~~~~~~~i~~~~~~~~ 250 (289)
+++.-.. +...-.+-.++.++|...+++++-+..+.+..+|....
T Consensus 330 R~~~gs~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~ 378 (423)
T KOG0313|consen 330 RTGDGSVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRST 378 (423)
T ss_pred CCCCCceeEEeeecchhhhhheecCCCCceEEEEEecCCeEEEEEeccC
Confidence 7654322 23344567889999999999999999999999987643
No 238
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=91.51 E-value=9.1 Score=33.57 Aligned_cols=110 Identities=16% Similarity=0.147 Sum_probs=60.7
Q ss_pred CCCEEEEecCCeEEEEecCCceEEeee-----------ecCcCc--cCeEEc-CCCcEEEEeCC----------CceEEE
Q 022967 87 NGVLYTATRDGWIKRLHKNGTWENWKL-----------IGGDTL--LGITTT-QENEILVCDAD----------KGLLKV 142 (289)
Q Consensus 87 ~g~l~v~~~~g~i~~~~~~g~~~~~~~-----------~~~~p~--~gl~~d-~~g~l~v~~~~----------~~i~~~ 142 (289)
++.+|+-+.+|.|+.++-.|....+.. ..-+|- --++++ ..++|||.-+. ..||.+
T Consensus 195 ~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~ 274 (342)
T PF06433_consen 195 GGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVY 274 (342)
T ss_dssp TTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEE
T ss_pred CCeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeEEEEecCCCCCCccCCceEEEEE
Confidence 556777888999999884443222211 011222 036776 46689987321 138888
Q ss_pred e-CCC--eEEEEeccCCccccCccceEEcCCC--cEEEeeCCCccCccccccccceecCCCEEEEEeCCCCeEEEeeCCC
Q 022967 143 T-EEG--VTVLASHVNGSRINLADDLIAATDG--SIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSL 217 (289)
Q Consensus 143 ~-~~g--~~~~~~~~~~~~~~~~~~l~~~~dG--~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~ 217 (289)
| +++ +..+... +...+|.+..|. .||..+.. .+.|+.+|+.+|+.....+.+
T Consensus 275 D~~t~krv~Ri~l~------~~~~Si~Vsqd~~P~L~~~~~~-----------------~~~l~v~D~~tGk~~~~~~~l 331 (342)
T PF06433_consen 275 DLKTHKRVARIPLE------HPIDSIAVSQDDKPLLYALSAG-----------------DGTLDVYDAATGKLVRSIEQL 331 (342)
T ss_dssp ETTTTEEEEEEEEE------EEESEEEEESSSS-EEEEEETT-----------------TTEEEEEETTT--EEEEE---
T ss_pred ECCCCeEEEEEeCC------CccceEEEccCCCcEEEEEcCC-----------------CCeEEEEeCcCCcEEeehhcc
Confidence 8 666 4444321 124478888765 46655432 467999999988766555554
Q ss_pred CC
Q 022967 218 FF 219 (289)
Q Consensus 218 ~~ 219 (289)
..
T Consensus 332 G~ 333 (342)
T PF06433_consen 332 GE 333 (342)
T ss_dssp SS
T ss_pred CC
Confidence 43
No 239
>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins. Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.
Probab=91.44 E-value=9.9 Score=35.26 Aligned_cols=112 Identities=15% Similarity=0.106 Sum_probs=54.7
Q ss_pred EEEccCCCEEEEecCCeEEEEecCCceEEeeeecC----cCccCeEEcCCCcEEEEeC--------------CCceEEEe
Q 022967 82 VCVDRNGVLYTATRDGWIKRLHKNGTWENWKLIGG----DTLLGITTTQENEILVCDA--------------DKGLLKVT 143 (289)
Q Consensus 82 l~~d~~g~l~v~~~~g~i~~~~~~g~~~~~~~~~~----~p~~gl~~d~~g~l~v~~~--------------~~~i~~~~ 143 (289)
+...++|++++... .++..+|..|+........+ .-+ .+...++|++++... ...|+.+|
T Consensus 153 ~~~l~nG~ll~~~~-~~~~e~D~~G~v~~~~~l~~~~~~~HH-D~~~l~nGn~L~l~~~~~~~~~~~~~~~~~D~Ivevd 230 (477)
T PF05935_consen 153 FKQLPNGNLLIGSG-NRLYEIDLLGKVIWEYDLPGGYYDFHH-DIDELPNGNLLILASETKYVDEDKDVDTVEDVIVEVD 230 (477)
T ss_dssp EEE-TTS-EEEEEB-TEEEEE-TT--EEEEEE--TTEE-B-S--EEE-TTS-EEEEEEETTEE-TS-EE---S-EEEEE-
T ss_pred eeEcCCCCEEEecC-CceEEEcCCCCEEEeeecCCccccccc-ccEECCCCCEEEEEeecccccCCCCccEecCEEEEEC
Confidence 44555677765544 56777777776443322222 135 888889998666433 23578888
Q ss_pred CCC-eEEEEe--c-cC--------------------CccccCccceEEcC-CCcEEEeeCCCccCccccccccceecCCC
Q 022967 144 EEG-VTVLAS--H-VN--------------------GSRINLADDLIAAT-DGSIYFSVASTKFGLHNWGLDLLEAKPHG 198 (289)
Q Consensus 144 ~~g-~~~~~~--~-~~--------------------~~~~~~~~~l~~~~-dG~lyv~~~~~~~~~~~~~~~~~~~~~~g 198 (289)
.+| +..... . .. .....+.+++..++ ++.|.++.-. ..
T Consensus 231 ~tG~vv~~wd~~d~ld~~~~~~~~~~~~~~~~~~~~~~DW~H~Nsi~yd~~dd~iivSsR~-----------------~s 293 (477)
T PF05935_consen 231 PTGEVVWEWDFFDHLDPYRDTVLKPYPYGDISGSGGGRDWLHINSIDYDPSDDSIIVSSRH-----------------QS 293 (477)
T ss_dssp TTS-EEEEEEGGGTS-TT--TTGGT--SSSSS-SSTTSBS--EEEEEEETTTTEEEEEETT-----------------T-
T ss_pred CCCCEEEEEehHHhCCcccccccccccccccccCCCCCCccccCccEEeCCCCeEEEEcCc-----------------ce
Confidence 777 332211 1 10 01113567888888 7788887532 24
Q ss_pred EEEEEeCCCCeEEE
Q 022967 199 KLLKYDPSLNETSI 212 (289)
Q Consensus 199 ~i~~~~~~~~~~~~ 212 (289)
.|+++|.+++++.-
T Consensus 294 ~V~~Id~~t~~i~W 307 (477)
T PF05935_consen 294 AVIKIDYRTGKIKW 307 (477)
T ss_dssp EEEEEE-TTS-EEE
T ss_pred EEEEEECCCCcEEE
Confidence 68888866666553
No 240
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=91.21 E-value=3 Score=36.43 Aligned_cols=49 Identities=12% Similarity=0.146 Sum_probs=32.7
Q ss_pred CCEEEEEeCCCCeEE-EeeCCCCCcceEEEecCCCEEEEEeCCCCeEEEEEe
Q 022967 197 HGKLLKYDPSLNETS-ILLDSLFFANGVALSKDEDYLVVCETFKFRCLKYWL 247 (289)
Q Consensus 197 ~g~i~~~~~~~~~~~-~~~~~~~~p~gl~~~~d~~~l~v~~~~~~~i~~~~~ 247 (289)
.+.|+.||...+... .+.- -..+|+|+|+| ....+++....+.+|-||.
T Consensus 209 DrsIvLyD~R~~~Pl~KVi~-~mRTN~IswnP-eafnF~~a~ED~nlY~~Dm 258 (433)
T KOG0268|consen 209 DRSIVLYDLRQASPLKKVIL-TMRTNTICWNP-EAFNFVAANEDHNLYTYDM 258 (433)
T ss_pred CCceEEEecccCCccceeee-eccccceecCc-cccceeeccccccceehhh
Confidence 456888887655432 2222 23579999999 5557777677788888875
No 241
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=91.17 E-value=8.9 Score=36.46 Aligned_cols=144 Identities=16% Similarity=0.186 Sum_probs=76.4
Q ss_pred CCCEE-EEecC------CeEEEEec-CCceEEeeeecC-c-CccCeEEcCCCcEEEEeCCC------ceEEEeCC-C-eE
Q 022967 87 NGVLY-TATRD------GWIKRLHK-NGTWENWKLIGG-D-TLLGITTTQENEILVCDADK------GLLKVTEE-G-VT 148 (289)
Q Consensus 87 ~g~l~-v~~~~------g~i~~~~~-~g~~~~~~~~~~-~-p~~gl~~d~~g~l~v~~~~~------~i~~~~~~-g-~~ 148 (289)
+|.|| +|-.+ ..+.+||+ ..++.....-.. + -. |++. -+|.||+..... .+-++|+. . .+
T Consensus 332 ~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a~M~~~R~~~-~v~~-l~g~iYavGG~dg~~~l~svE~YDp~~~~W~ 409 (571)
T KOG4441|consen 332 NGKLYVVGGYDSGSDRLSSVERYDPRTNQWTPVAPMNTKRSDF-GVAV-LDGKLYAVGGFDGEKSLNSVECYDPVTNKWT 409 (571)
T ss_pred CCEEEEEccccCCCcccceEEEecCCCCceeccCCccCccccc-eeEE-ECCEEEEEeccccccccccEEEecCCCCccc
Confidence 67888 44444 34677773 334544332111 1 23 5555 368899875322 35666632 2 44
Q ss_pred EEEeccCCccccCccceEEc-CCCcEEEeeCCCccCccccccccceecCCCEEEEEeCCCCeEEEeeCC--CCCcceEEE
Q 022967 149 VLASHVNGSRINLADDLIAA-TDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDS--LFFANGVAL 225 (289)
Q Consensus 149 ~~~~~~~~~~~~~~~~l~~~-~dG~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~--~~~p~gl~~ 225 (289)
....-.. .-.+..+. -+|.||+.-+... ..+.-..+.+|||.+++++..+.- -+.-.|++.
T Consensus 410 ~va~m~~-----~r~~~gv~~~~g~iYi~GG~~~-----------~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g~a~ 473 (571)
T KOG4441|consen 410 PVAPMLT-----RRSGHGVAVLGGKLYIIGGGDG-----------SSNCLNSVECYDPETNTWTLIAPMNTRRSGFGVAV 473 (571)
T ss_pred ccCCCCc-----ceeeeEEEEECCEEEEEcCcCC-----------CccccceEEEEcCCCCceeecCCcccccccceEEE
Confidence 3322111 11223333 3889999865310 000235789999999988776432 223344444
Q ss_pred ecCCCEEEEEeCC-----CCeEEEEEecCC
Q 022967 226 SKDEDYLVVCETF-----KFRCLKYWLKGE 250 (289)
Q Consensus 226 ~~d~~~l~v~~~~-----~~~i~~~~~~~~ 250 (289)
- ++.||+.-.. ...+.+||+..+
T Consensus 474 ~--~~~iYvvGG~~~~~~~~~VE~ydp~~~ 501 (571)
T KOG4441|consen 474 L--NGKIYVVGGFDGTSALSSVERYDPETN 501 (571)
T ss_pred E--CCEEEEECCccCCCccceEEEEcCCCC
Confidence 3 4458887442 234788887654
No 242
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=90.48 E-value=16 Score=35.28 Aligned_cols=100 Identities=10% Similarity=-0.012 Sum_probs=52.3
Q ss_pred CccceEEcCCCcEEEeeCCCccCccccccccceecCCCEEEEEeCCCCeEEEeeCC----CCCcceEEEecCCCEEEEEe
Q 022967 161 LADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDS----LFFANGVALSKDEDYLVVCE 236 (289)
Q Consensus 161 ~~~~l~~~~dG~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~----~~~p~gl~~~~d~~~l~v~~ 236 (289)
..++|+++|.-.+.++... .-.|-.|+.+.++......+ ...+.-+.++|.|- |++.
T Consensus 598 TlYDm~Vdp~~k~v~t~cQ-----------------Drnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgi--Y~at 658 (1080)
T KOG1408|consen 598 TLYDMAVDPTSKLVVTVCQ-----------------DRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGI--YLAT 658 (1080)
T ss_pred eEEEeeeCCCcceEEEEec-----------------ccceEEEeccccceeeeecccccCCCceEEEEECCCcc--EEEE
Confidence 3567888887655554321 12355566655544333222 23456677888875 4443
Q ss_pred C-CCCeEEEEEecCCC-C---cceeeeeccCCCCCCc---eeeCCCCCEEE
Q 022967 237 T-FKFRCLKYWLKGES-K---EQTEIFVENLPGGPDN---IKLAPDGSFWI 279 (289)
Q Consensus 237 ~-~~~~i~~~~~~~~~-~---~~~~~~~~~~~~~p~~---i~~d~~G~lwv 279 (289)
+ .+..|-.||..... . ......+.++...+|+ |.+..||-|+|
T Consensus 659 Scsdktl~~~Df~sgEcvA~m~GHsE~VTG~kF~nDCkHlISvsgDgCIFv 709 (1080)
T KOG1408|consen 659 SCSDKTLCFVDFVSGECVAQMTGHSEAVTGVKFLNDCKHLISVSGDGCIFV 709 (1080)
T ss_pred eecCCceEEEEeccchhhhhhcCcchheeeeeecccchhheeecCCceEEE
Confidence 3 34778888875331 1 1111112222223444 66778887665
No 243
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=90.43 E-value=6.6 Score=34.44 Aligned_cols=148 Identities=16% Similarity=0.122 Sum_probs=78.5
Q ss_pred cCCcceEEEccCC--CEEEEecCCeEEEEecCC--ceEEeeeecCcCccCeEEcCCCcEEEEeCCCceEEEeCCC--eEE
Q 022967 76 LNGPEDVCVDRNG--VLYTATRDGWIKRLHKNG--TWENWKLIGGDTLLGITTTQENEILVCDADKGLLKVTEEG--VTV 149 (289)
Q Consensus 76 ~~~p~~l~~d~~g--~l~v~~~~g~i~~~~~~g--~~~~~~~~~~~p~~gl~~d~~g~l~v~~~~~~i~~~~~~g--~~~ 149 (289)
-.+-.++|-+|+. .+..+..+|.|..|+... ....+....|... ||.++....+++++. ..+-.+--+| ...
T Consensus 66 rdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~-Gi~v~~~~~~tvgdD-KtvK~wk~~~~p~~t 143 (433)
T KOG0268|consen 66 RDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRTFKAHEGLVR-GICVTQTSFFTVGDD-KTVKQWKIDGPPLHT 143 (433)
T ss_pred ccccchhhcCcchhhhhhccccCceEEEEehhhhhhhheeecccCcee-eEEecccceEEecCC-cceeeeeccCCccee
Confidence 3455666777643 345677889999998433 2333444445666 999987444555553 4333332223 222
Q ss_pred EEeccCCccccCccceEEcCCCcEEEeeCCCccCccccccccceecCCCEEEEEeCCC-CeEEEeeCCCCCcceEEEecC
Q 022967 150 LASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSL-NETSILLDSLFFANGVALSKD 228 (289)
Q Consensus 150 ~~~~~~~~~~~~~~~l~~~~dG~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~-~~~~~~~~~~~~p~gl~~~~d 228 (289)
+..+ ....||.-...+.++.+-+ ..|-.+|... .-+..+..+......+.++|-
T Consensus 144 ilg~------s~~~gIdh~~~~~~FaTcG-------------------e~i~IWD~~R~~Pv~smswG~Dti~svkfNpv 198 (433)
T KOG0268|consen 144 ILGK------SVYLGIDHHRKNSVFATCG-------------------EQIDIWDEQRDNPVSSMSWGADSISSVKFNPV 198 (433)
T ss_pred eecc------ccccccccccccccccccC-------------------ceeeecccccCCccceeecCCCceeEEecCCC
Confidence 2211 1122333222333444321 1233444321 123334445555566788887
Q ss_pred CCEEEEEeCCCCeEEEEEecCC
Q 022967 229 EDYLVVCETFKFRCLKYWLKGE 250 (289)
Q Consensus 229 ~~~l~v~~~~~~~i~~~~~~~~ 250 (289)
...++.+....+.|+.||.-..
T Consensus 199 ETsILas~~sDrsIvLyD~R~~ 220 (433)
T KOG0268|consen 199 ETSILASCASDRSIVLYDLRQA 220 (433)
T ss_pred cchheeeeccCCceEEEecccC
Confidence 7667777667788999997543
No 244
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=90.40 E-value=1.3 Score=40.02 Aligned_cols=63 Identities=21% Similarity=0.420 Sum_probs=34.6
Q ss_pred cceEEEecCCCEEEEEeCCCCeEEEEEecCCCCcc--eeeeec--------------cCCCCCCceeeCCCC-CEEEEEe
Q 022967 220 ANGVALSKDEDYLVVCETFKFRCLKYWLKGESKEQ--TEIFVE--------------NLPGGPDNIKLAPDG-SFWIAIL 282 (289)
Q Consensus 220 p~gl~~~~d~~~l~v~~~~~~~i~~~~~~~~~~~~--~~~~~~--------------~~~~~p~~i~~d~~G-~lwv~~~ 282 (289)
+.-|.+|.|.++|||++...+.|++||+.++.--+ -++++. .+.+.|.-+.+..|| ++||++.
T Consensus 314 itDI~iSlDDrfLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgPqMvqlS~DGkRlYvTnS 393 (461)
T PF05694_consen 314 ITDILISLDDRFLYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRGGPQMVQLSLDGKRLYVTNS 393 (461)
T ss_dssp ---EEE-TTS-EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------S----EEE-TTSSEEEEE--
T ss_pred eEeEEEccCCCEEEEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccccCCCCCeEEEccCCeEEEEEee
Confidence 46678999999999999999999999998642211 122221 233567778888888 7888864
No 245
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=90.16 E-value=9.2 Score=31.33 Aligned_cols=72 Identities=14% Similarity=0.122 Sum_probs=46.5
Q ss_pred CccceEEcCCCcEEEeeCCCccCccccccccceecCCCEEEEEeCCCCeEE-EeeCCCCCcceEEEecCCCEEEEEeCCC
Q 022967 161 LADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETS-ILLDSLFFANGVALSKDEDYLVVCETFK 239 (289)
Q Consensus 161 ~~~~l~~~~dG~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~-~~~~~~~~p~gl~~~~d~~~l~v~~~~~ 239 (289)
....+++||.|+|.++... ......||..+++.. .+.........+.|+|...+|. +.+..
T Consensus 233 avaav~vdpsgrll~sg~~-----------------dssc~lydirg~r~iq~f~phsadir~vrfsp~a~yll-t~syd 294 (350)
T KOG0641|consen 233 AVAAVAVDPSGRLLASGHA-----------------DSSCMLYDIRGGRMIQRFHPHSADIRCVRFSPGAHYLL-TCSYD 294 (350)
T ss_pred eeEEEEECCCcceeeeccC-----------------CCceEEEEeeCCceeeeeCCCccceeEEEeCCCceEEE-Eeccc
Confidence 4568899999999987432 234555666655532 3333334445678888666444 44667
Q ss_pred CeEEEEEecCC
Q 022967 240 FRCLKYWLKGE 250 (289)
Q Consensus 240 ~~i~~~~~~~~ 250 (289)
..|..-|+.|+
T Consensus 295 ~~ikltdlqgd 305 (350)
T KOG0641|consen 295 MKIKLTDLQGD 305 (350)
T ss_pred ceEEEeecccc
Confidence 88888888876
No 246
>PF06739 SBBP: Beta-propeller repeat; InterPro: IPR010620 This family is related to IPR001680 from INTERPRO and is likely to also form a beta-propeller. SBBP stands for Seven Bladed Beta Propeller.
Probab=90.15 E-value=0.29 Score=27.98 Aligned_cols=21 Identities=10% Similarity=0.146 Sum_probs=17.4
Q ss_pred CCCceeeCCCCCEEEEEeCcc
Q 022967 265 GPDNIKLAPDGSFWIAILQVF 285 (289)
Q Consensus 265 ~p~~i~~d~~G~lwv~~~~g~ 285 (289)
.+.+|++|.+|++||+....+
T Consensus 14 ~~~~IavD~~GNiYv~G~T~~ 34 (38)
T PF06739_consen 14 YGNGIAVDSNGNIYVTGYTNG 34 (38)
T ss_pred eEEEEEECCCCCEEEEEeecC
Confidence 478899999999999976543
No 247
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=90.02 E-value=17 Score=34.17 Aligned_cols=63 Identities=13% Similarity=0.171 Sum_probs=37.7
Q ss_pred CCcceEEEecCCCEEEEEeCCCCeEEEEEecCCCCcceeeeeccCCCCCCceeeCCCC-CEEEEEeCcc
Q 022967 218 FFANGVALSKDEDYLVVCETFKFRCLKYWLKGESKEQTEIFVENLPGGPDNIKLAPDG-SFWIAILQVF 285 (289)
Q Consensus 218 ~~p~gl~~~~d~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G-~lwv~~~~g~ 285 (289)
..+..+.|+|-.-+|+|+. .+-|.+||+....+.+ .+..+ ....+.+++...| +|.++.....
T Consensus 567 G~vq~v~FHPs~p~lfVaT--q~~vRiYdL~kqelvK--kL~tg-~kwiS~msihp~GDnli~gs~d~k 630 (733)
T KOG0650|consen 567 GLVQRVKFHPSKPYLFVAT--QRSVRIYDLSKQELVK--KLLTG-SKWISSMSIHPNGDNLILGSYDKK 630 (733)
T ss_pred CceeEEEecCCCceEEEEe--ccceEEEehhHHHHHH--HHhcC-CeeeeeeeecCCCCeEEEecCCCe
Confidence 4567788999888899984 4678888875321111 11111 1234556776666 6777665543
No 248
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=90.01 E-value=12 Score=32.23 Aligned_cols=179 Identities=18% Similarity=0.111 Sum_probs=89.3
Q ss_pred ceEEEccCCCEEEEecCCeEEEEe-cCCceEEee---eecCcCccCeEEcCCCcEEEEeCCCceEEEeCCC---eEEEEe
Q 022967 80 EDVCVDRNGVLYTATRDGWIKRLH-KNGTWENWK---LIGGDTLLGITTTQENEILVCDADKGLLKVTEEG---VTVLAS 152 (289)
Q Consensus 80 ~~l~~d~~g~l~v~~~~g~i~~~~-~~g~~~~~~---~~~~~p~~gl~~d~~g~l~v~~~~~~i~~~~~~g---~~~~~~ 152 (289)
+.+++. .+.-|++..++++..+| .+-...++. ..++... ++.. .+++.|+++...+++..+.++ ..++-.
T Consensus 175 ~~v~IS-Gn~AYvA~~d~GL~ivDVSnp~sPvli~~~n~g~g~~-sv~v-sdnr~y~vvy~egvlivd~s~~ssp~~~gs 251 (370)
T COG5276 175 HDVAIS-GNYAYVAWRDGGLTIVDVSNPHSPVLIGSYNTGPGTY-SVSV-SDNRAYLVVYDEGVLIVDVSGPSSPTVFGS 251 (370)
T ss_pred eeEEEe-cCeEEEEEeCCCeEEEEccCCCCCeEEEEEecCCceE-EEEe-cCCeeEEEEcccceEEEecCCCCCceEeec
Confidence 456664 44677888888888888 222222221 2222334 4545 466899998878899988555 233321
Q ss_pred ccCCccccCccceEEcCCCcEEEeeCCCccCccccccccceecCCCEEEEEeCC--CCeE-E-EeeCCCCCcceEEEecC
Q 022967 153 HVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPS--LNET-S-ILLDSLFFANGVALSKD 228 (289)
Q Consensus 153 ~~~~~~~~~~~~l~~~~dG~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~--~~~~-~-~~~~~~~~p~gl~~~~d 228 (289)
..........++.+ ++...|+.+.. + ++-.+|.. ++-+ . .+........|+..+
T Consensus 252 -yet~~p~~~s~v~V-s~~~~Yvadga--~----------------gl~~idisnp~spfl~ss~~t~g~~a~gi~ay-- 309 (370)
T COG5276 252 -YETSNPVSISTVPV-SGEYAYVADGA--K----------------GLPIIDISNPPSPFLSSSLDTAGYQAAGIRAY-- 309 (370)
T ss_pred -cccCCcccccceec-ccceeeeeccc--c----------------CceeEeccCCCCCchhccccCCCccccceEEe--
Confidence 11111111122333 45578998865 1 12223322 1111 1 111223345666654
Q ss_pred CCEEEEEeCCCCeEEEEEecCCCCcceeeeeccCCCCCCceeeCCCCCEEEEEeCcccc
Q 022967 229 EDYLVVCETFKFRCLKYWLKGESKEQTEIFVENLPGGPDNIKLAPDGSFWIAILQVFIS 287 (289)
Q Consensus 229 ~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~lwv~~~~g~i~ 287 (289)
+.++|+++.. .....+...++.... ++.....+....+.++-+ .+|...+++|++
T Consensus 310 ~~y~yiadkn--~g~vV~~s~~s~m~~-~~g~~ti~~s~~v~~~~q-~~y~~d~~~gl~ 364 (370)
T COG5276 310 GNYNYIADKN--TGAVVDASPPSMMDK-RPGRPTIGQSCDVSVDTQ-IIYSTDYNGGLS 364 (370)
T ss_pred cCeeEeccCC--ceEEEeCCChhhccc-ccCcceEeeecceEEEee-EEEEeecCCCEE
Confidence 6779999765 333344443322111 111011122334667766 788888887764
No 249
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=89.78 E-value=22 Score=35.12 Aligned_cols=121 Identities=10% Similarity=0.054 Sum_probs=61.8
Q ss_pred CCCEEEEecCCeEEEEe-cCCceEE-eee--------ec-CcC------ccCeEEcCCCcEEEEeC----------CCce
Q 022967 87 NGVLYTATRDGWIKRLH-KNGTWEN-WKL--------IG-GDT------LLGITTTQENEILVCDA----------DKGL 139 (289)
Q Consensus 87 ~g~l~v~~~~g~i~~~~-~~g~~~~-~~~--------~~-~~p------~~gl~~d~~g~l~v~~~----------~~~i 139 (289)
+++||+++.+++++.+| .+|+... +.. .. ..+ .+.-.+ .++.+++... ...|
T Consensus 260 ~~rV~~~T~Dg~LiALDA~TGk~~W~fg~~G~vdl~~~~g~~~~g~~~~ts~P~V-~~g~VIvG~~v~d~~~~~~~~G~I 338 (764)
T TIGR03074 260 ARRIILPTSDARLIALDADTGKLCEDFGNNGTVDLTAGMGTTPPGYYYPTSPPLV-AGTTVVIGGRVADNYSTDEPSGVI 338 (764)
T ss_pred CCEEEEecCCCeEEEEECCCCCEEEEecCCCceeeecccCcCCCcccccccCCEE-ECCEEEEEecccccccccCCCcEE
Confidence 45889988999999999 5776542 110 00 001 101122 2567777632 1236
Q ss_pred EEEe-CCC-eEEEEecc---------CCccc--cCc---cceEEcCC-CcEEEeeCCCccCccccc---cccceecCCCE
Q 022967 140 LKVT-EEG-VTVLASHV---------NGSRI--NLA---DDLIAATD-GSIYFSVASTKFGLHNWG---LDLLEAKPHGK 199 (289)
Q Consensus 140 ~~~~-~~g-~~~~~~~~---------~~~~~--~~~---~~l~~~~d-G~lyv~~~~~~~~~~~~~---~~~~~~~~~g~ 199 (289)
..+| .+| ...-.... .+... ..+ ..++.|++ |.+|+..+... .++. +........+.
T Consensus 339 ~A~Da~TGkl~W~~~~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~---pd~~g~~r~~~~n~y~~s 415 (764)
T TIGR03074 339 RAFDVNTGALVWAWDPGNPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVYLPMGNQT---PDQWGGDRTPADEKYSSS 415 (764)
T ss_pred EEEECCCCcEeeEEecCCCCcccCCCCCCEeccCCCCccCceEEcCCCCeEEEeCCCcc---ccccCCccccCcccccce
Confidence 7788 777 43222110 01000 111 35678875 67888654311 1110 11111233578
Q ss_pred EEEEeCCCCeEE
Q 022967 200 LLKYDPSLNETS 211 (289)
Q Consensus 200 i~~~~~~~~~~~ 211 (289)
|+.+|+++|+..
T Consensus 416 lvALD~~TGk~~ 427 (764)
T TIGR03074 416 LVALDATTGKER 427 (764)
T ss_pred EEEEeCCCCceE
Confidence 999999998865
No 250
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=89.69 E-value=3.9 Score=36.29 Aligned_cols=149 Identities=13% Similarity=0.105 Sum_probs=84.2
Q ss_pred CCcceEEEccCCCEEEEe-cCCeEEEEe-cCCceE-EeeeecCcCccCeEEcCCCcEEEEeCCCceEEE-e-CCC--eEE
Q 022967 77 NGPEDVCVDRNGVLYTAT-RDGWIKRLH-KNGTWE-NWKLIGGDTLLGITTTQENEILVCDADKGLLKV-T-EEG--VTV 149 (289)
Q Consensus 77 ~~p~~l~~d~~g~l~v~~-~~g~i~~~~-~~g~~~-~~~~~~~~p~~gl~~d~~g~l~v~~~~~~i~~~-~-~~g--~~~ 149 (289)
+.-+++++.++...|++. .+|.|..++ ...+-+ .+...+-.+. .+.+++...|.++.....++++ | .+| +..
T Consensus 181 eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVk-svdWHP~kgLiasgskDnlVKlWDprSg~cl~t 259 (464)
T KOG0284|consen 181 EAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVK-SVDWHPTKGLIASGSKDNLVKLWDPRSGSCLAT 259 (464)
T ss_pred hhhheeccCCCCceeEEecCCCeEEEEeccCCchhheeccCCCCcc-eeccCCccceeEEccCCceeEeecCCCcchhhh
Confidence 345678888877777555 678888887 333322 2223333456 8888876656555433335554 4 455 332
Q ss_pred EEeccCCccccCccceEEcCCCcEEEeeCCCccCccccccccceecCCCEEEEEeCCC-CeEEEeeCCCCCcceEEEecC
Q 022967 150 LASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSL-NETSILLDSLFFANGVALSKD 228 (289)
Q Consensus 150 ~~~~~~~~~~~~~~~l~~~~dG~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~-~~~~~~~~~~~~p~gl~~~~d 228 (289)
+... .+...++.+.++|+...+.+. ...+-.||..+ +++..+...-.....++|+|-
T Consensus 260 lh~H-----KntVl~~~f~~n~N~Llt~sk-----------------D~~~kv~DiR~mkEl~~~r~Hkkdv~~~~WhP~ 317 (464)
T KOG0284|consen 260 LHGH-----KNTVLAVKFNPNGNWLLTGSK-----------------DQSCKVFDIRTMKELFTYRGHKKDVTSLTWHPL 317 (464)
T ss_pred hhhc-----cceEEEEEEcCCCCeeEEccC-----------------CceEEEEehhHhHHHHHhhcchhhheeeccccc
Confidence 2111 134568889999976666432 22344555431 122222222334456778887
Q ss_pred CCEEEEEeCCCCeEEEEEec
Q 022967 229 EDYLVVCETFKFRCLKYWLK 248 (289)
Q Consensus 229 ~~~l~v~~~~~~~i~~~~~~ 248 (289)
..-|+.+-...+.|..+.+.
T Consensus 318 ~~~lftsgg~Dgsvvh~~v~ 337 (464)
T KOG0284|consen 318 NESLFTSGGSDGSVVHWVVG 337 (464)
T ss_pred cccceeeccCCCceEEEecc
Confidence 66677777677777777665
No 251
>KOG1215 consensus Low-density lipoprotein receptors containing Ca2+-binding EGF-like domains [Signal transduction mechanisms]
Probab=89.40 E-value=18 Score=36.46 Aligned_cols=149 Identities=15% Similarity=0.115 Sum_probs=94.4
Q ss_pred cCCcceEEEcc-CCCEEEEe-cCCeEEEEecCCceEEe--eeecCcCccCeEEcC-CCcEEEEeCCC--ceEEEeCCC--
Q 022967 76 LNGPEDVCVDR-NGVLYTAT-RDGWIKRLHKNGTWENW--KLIGGDTLLGITTTQ-ENEILVCDADK--GLLKVTEEG-- 146 (289)
Q Consensus 76 ~~~p~~l~~d~-~g~l~v~~-~~g~i~~~~~~g~~~~~--~~~~~~p~~gl~~d~-~g~l~v~~~~~--~i~~~~~~g-- 146 (289)
.-.|+++++|- .+++|-++ ....+.+.+.+|....+ ......|- .+++++ .|.+|.++.+. .+.+...+|
T Consensus 479 ~~~~~~lavD~~~~~~y~tDe~~~~i~v~~~~g~~~~vl~~~~l~~~r-~~~v~p~~g~~~wtd~~~~~~i~ra~~dg~~ 557 (877)
T KOG1215|consen 479 LCIPEGLAVDWIGDNIYWTDEGNCLIEVADLDGSSRKVLVSKDLDLPR-SIAVDPEKGLMFWTDWGQPPRIERASLDGSE 557 (877)
T ss_pred ccccCcEEEEeccCCceecccCCceeEEEEccCCceeEEEecCCCCcc-ceeeccccCeeEEecCCCCchhhhhcCCCCC
Confidence 67899999998 77888554 55666666656653322 22225677 888886 45688887653 344444566
Q ss_pred eEEEEeccCCccccCccceEEcC-CCcEEEeeCCCccCccccccccceecCCCEEEEEeCCCCeEE-EeeCCCCCcceEE
Q 022967 147 VTVLASHVNGSRINLADDLIAAT-DGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETS-ILLDSLFFANGVA 224 (289)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~l~~~~-dG~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~-~~~~~~~~p~gl~ 224 (289)
...+... ....+++++.|- +..+|+.+... ...+..++.++...+ ........|.+++
T Consensus 558 ~~~l~~~----~~~~p~glt~d~~~~~~yw~d~~~----------------~~~i~~~~~~g~~r~~~~~~~~~~p~~~~ 617 (877)
T KOG1215|consen 558 RAVLVTN----GILWPNGLTIDYETDRLYWADAKL----------------DYTIESANMDGQNRRVVDSEDLPHPFGLS 617 (877)
T ss_pred ceEEEeC----CccCCCcceEEeecceeEEEcccC----------------CcceeeeecCCCceEEeccccCCCceEEE
Confidence 4444332 145789999996 66899998652 124566666544443 3345567777777
Q ss_pred EecCCCEEEEEeCCCCeEEEEEe
Q 022967 225 LSKDEDYLVVCETFKFRCLKYWL 247 (289)
Q Consensus 225 ~~~d~~~l~v~~~~~~~i~~~~~ 247 (289)
.. ..++|+++...+.+.+...
T Consensus 618 ~~--~~~iyw~d~~~~~~~~~~~ 638 (877)
T KOG1215|consen 618 VF--EDYIYWTDWSNRAISRAEK 638 (877)
T ss_pred Ee--cceeEEeeccccceEeeec
Confidence 65 3458999887665555543
No 252
>PHA02713 hypothetical protein; Provisional
Probab=89.31 E-value=20 Score=34.00 Aligned_cols=156 Identities=12% Similarity=0.071 Sum_probs=73.8
Q ss_pred CCCEEE-EecC------CeEEEEec-CCceEEeeeec-CcCccCeEEcCCCcEEEEeCC------CceEEEe-CCC-eEE
Q 022967 87 NGVLYT-ATRD------GWIKRLHK-NGTWENWKLIG-GDTLLGITTTQENEILVCDAD------KGLLKVT-EEG-VTV 149 (289)
Q Consensus 87 ~g~l~v-~~~~------g~i~~~~~-~g~~~~~~~~~-~~p~~gl~~d~~g~l~v~~~~------~~i~~~~-~~g-~~~ 149 (289)
++.||+ |..+ ..++++++ ...+.....-. .+...+++. -+|.||+.... ..+.++| ... .+.
T Consensus 303 ~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~~~~~-~~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~ 381 (557)
T PHA02713 303 DNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRFSLAV-IDDTIYAIGGQNGTNVERTIECYTMGDDKWKM 381 (557)
T ss_pred CCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhceeEEE-ECCEEEEECCcCCCCCCceEEEEECCCCeEEE
Confidence 678995 3321 34778884 34444332211 111113333 36789987532 1266777 344 443
Q ss_pred EEeccCCccccCccceEEcCCCcEEEeeCCCccCcc---ccccc---cceecCCCEEEEEeCCCCeEEEeeCC--CCCcc
Q 022967 150 LASHVNGSRINLADDLIAATDGSIYFSVASTKFGLH---NWGLD---LLEAKPHGKLLKYDPSLNETSILLDS--LFFAN 221 (289)
Q Consensus 150 ~~~~~~~~~~~~~~~l~~~~dG~lyv~~~~~~~~~~---~~~~~---~~~~~~~g~i~~~~~~~~~~~~~~~~--~~~p~ 221 (289)
+.. .+... .-.++ +.-+|.||+.-+....... ..... .........+.+|||++++++.+..- .+...
T Consensus 382 ~~~-mp~~r--~~~~~-~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~m~~~r~~~ 457 (557)
T PHA02713 382 LPD-MPIAL--SSYGM-CVLDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETLPNFWTGTIRP 457 (557)
T ss_pred CCC-CCccc--ccccE-EEECCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCeEeecCCCCcccccC
Confidence 322 11111 11122 2347899997543110000 00000 00001135699999999888766432 12223
Q ss_pred eEEEecCCCEEEEEeCCC------CeEEEEEecC
Q 022967 222 GVALSKDEDYLVVCETFK------FRCLKYWLKG 249 (289)
Q Consensus 222 gl~~~~d~~~l~v~~~~~------~~i~~~~~~~ 249 (289)
+++.- ++ .+|+....+ ..+.+||+..
T Consensus 458 ~~~~~-~~-~IYv~GG~~~~~~~~~~ve~Ydp~~ 489 (557)
T PHA02713 458 GVVSH-KD-DIYVVCDIKDEKNVKTCIFRYNTNT 489 (557)
T ss_pred cEEEE-CC-EEEEEeCCCCCCccceeEEEecCCC
Confidence 34332 34 488874321 3467898775
No 253
>smart00135 LY Low-density lipoprotein-receptor YWTD domain. Type "B" repeats in low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. Also present in a variety of molecules similar to gp300/megalin.
Probab=89.21 E-value=1.2 Score=25.41 Aligned_cols=33 Identities=30% Similarity=0.357 Sum_probs=24.7
Q ss_pred CcCCcceEEEcc-CCCEEEEe-cCCeEEEEecCCc
Q 022967 75 ILNGPEDVCVDR-NGVLYTAT-RDGWIKRLHKNGT 107 (289)
Q Consensus 75 ~~~~p~~l~~d~-~g~l~v~~-~~g~i~~~~~~g~ 107 (289)
.+..|.++++|+ ++.||.++ ..+.|.+.+-+|.
T Consensus 7 ~~~~~~~la~d~~~~~lYw~D~~~~~I~~~~~~g~ 41 (43)
T smart00135 7 GLGHPNGLAVDWIEGRLYWTDWGLDVIEVANLDGT 41 (43)
T ss_pred CCCCcCEEEEeecCCEEEEEeCCCCEEEEEeCCCC
Confidence 478899999999 56788544 6678888875553
No 254
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=89.12 E-value=15 Score=32.30 Aligned_cols=99 Identities=15% Similarity=0.077 Sum_probs=55.7
Q ss_pred CCcCCcceEEEccCCCEE-EEecCCeEEEEe-cCCceEEeeee-cCcCccCeEEcCCC-cEEEEeCCCceEEEe-CCC--
Q 022967 74 GILNGPEDVCVDRNGVLY-TATRDGWIKRLH-KNGTWENWKLI-GGDTLLGITTTQEN-EILVCDADKGLLKVT-EEG-- 146 (289)
Q Consensus 74 ~~~~~p~~l~~d~~g~l~-v~~~~g~i~~~~-~~g~~~~~~~~-~~~p~~gl~~d~~g-~l~v~~~~~~i~~~~-~~g-- 146 (289)
+-+..-+++++||.+..+ .+..++.|-.+| ..|++.....+ -.... |+++.+.- .||-+..+..+-.+| ...
T Consensus 149 gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr-~vavS~rHpYlFs~gedk~VKCwDLe~nkv 227 (460)
T KOG0285|consen 149 GHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKLTLTGHIETVR-GVAVSKRHPYLFSAGEDKQVKCWDLEYNKV 227 (460)
T ss_pred hccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEEeecchhheee-eeeecccCceEEEecCCCeeEEEechhhhh
Confidence 335567889999976666 445777788888 67776543332 22345 88886543 244344334466666 322
Q ss_pred eEEEEeccCCccccCccceEEcCCCcEEEeeC
Q 022967 147 VTVLASHVNGSRINLADDLIAATDGSIYFSVA 178 (289)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~l~~~~dG~lyv~~~ 178 (289)
++.+.. -+...+.+...|--.+.++.+
T Consensus 228 IR~YhG-----HlS~V~~L~lhPTldvl~t~g 254 (460)
T KOG0285|consen 228 IRHYHG-----HLSGVYCLDLHPTLDVLVTGG 254 (460)
T ss_pred HHHhcc-----ccceeEEEeccccceeEEecC
Confidence 333222 123456677766555556543
No 255
>PHA02713 hypothetical protein; Provisional
Probab=89.06 E-value=9.6 Score=36.12 Aligned_cols=70 Identities=11% Similarity=0.152 Sum_probs=38.4
Q ss_pred cCCCcEEEeeCCCccCccccccccceecCCCEEEEEeCCC-CeEEEeeCC--CCCcceEEEecCCCEEEEEeCCCC--eE
Q 022967 168 ATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSL-NETSILLDS--LFFANGVALSKDEDYLVVCETFKF--RC 242 (289)
Q Consensus 168 ~~dG~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~-~~~~~~~~~--~~~p~gl~~~~d~~~l~v~~~~~~--~i 242 (289)
.-+|.||+.-+... .......+.+|||++ ++++.+..- -+.-.|++.. ++ .||+.-.... .+
T Consensus 461 ~~~~~IYv~GG~~~-----------~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~~~~~~-~~-~iyv~Gg~~~~~~~ 527 (557)
T PHA02713 461 SHKDDIYVVCDIKD-----------EKNVKTCIFRYNTNTYNGWELITTTESRLSALHTILH-DN-TIMMLHCYESYMLQ 527 (557)
T ss_pred EECCEEEEEeCCCC-----------CCccceeEEEecCCCCCCeeEccccCcccccceeEEE-CC-EEEEEeeecceeeh
Confidence 34689999754210 000113578999998 678766421 1122344433 44 4888743222 57
Q ss_pred EEEEecCC
Q 022967 243 LKYWLKGE 250 (289)
Q Consensus 243 ~~~~~~~~ 250 (289)
.+||+..+
T Consensus 528 e~yd~~~~ 535 (557)
T PHA02713 528 DTFNVYTY 535 (557)
T ss_pred hhcCcccc
Confidence 77877654
No 256
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=89.00 E-value=12 Score=31.02 Aligned_cols=172 Identities=10% Similarity=0.102 Sum_probs=91.4
Q ss_pred cceEEEccCCCEEEEecCCe-EEEEe-cCCceE-EeeeecCcCccCeEEcCCCcEEEEe-CCCceEEEe-CCC--eEEEE
Q 022967 79 PEDVCVDRNGVLYTATRDGW-IKRLH-KNGTWE-NWKLIGGDTLLGITTTQENEILVCD-ADKGLLKVT-EEG--VTVLA 151 (289)
Q Consensus 79 p~~l~~d~~g~l~v~~~~g~-i~~~~-~~g~~~-~~~~~~~~p~~gl~~d~~g~l~v~~-~~~~i~~~~-~~g--~~~~~ 151 (289)
-..+-++-+|+..++....+ |..|+ ..|... ++...+.... .++...|+.-+.+- ....+..+| ..| .+.+-
T Consensus 20 V~avryN~dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~EVl-D~~~s~Dnskf~s~GgDk~v~vwDV~TGkv~Rr~r 98 (307)
T KOG0316|consen 20 VRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVL-DAALSSDNSKFASCGGDKAVQVWDVNTGKVDRRFR 98 (307)
T ss_pred eEEEEEccCCCEEEEcCCCceEEeecccccceeeeecCCCceee-eccccccccccccCCCCceEEEEEcccCeeeeecc
Confidence 34556677888887775544 44555 456543 3333334455 56655554433332 224577788 777 44432
Q ss_pred eccCCccccCccceEEcCCCcEEEeeCCCccCccccccccceecCCCEEEEEeCCCCeEEEe---eCCCCCcceEEEecC
Q 022967 152 SHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSIL---LDSLFFANGVALSKD 228 (289)
Q Consensus 152 ~~~~~~~~~~~~~l~~~~dG~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~---~~~~~~p~gl~~~~d 228 (289)
.. ....+.+.+..+..+.++... ...+-.+|-.....+.+ .+.......+.+.
T Consensus 99 gH-----~aqVNtV~fNeesSVv~Sgsf-----------------D~s~r~wDCRS~s~ePiQildea~D~V~Si~v~-- 154 (307)
T KOG0316|consen 99 GH-----LAQVNTVRFNEESSVVASGSF-----------------DSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVA-- 154 (307)
T ss_pred cc-----cceeeEEEecCcceEEEeccc-----------------cceeEEEEcccCCCCccchhhhhcCceeEEEec--
Confidence 21 125678888888888776432 12344444333333322 2222223333332
Q ss_pred CCEEEEEeCCCCeEEEEEecCCCCcceeeeeccCCCCCCceeeCCCCCEEEEE
Q 022967 229 EDYLVVCETFKFRCLKYWLKGESKEQTEIFVENLPGGPDNIKLAPDGSFWIAI 281 (289)
Q Consensus 229 ~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~lwv~~ 281 (289)
++.+++.+..++++.||+.-..+. .+....-...+.+..||+.-++.
T Consensus 155 -~heIvaGS~DGtvRtydiR~G~l~-----sDy~g~pit~vs~s~d~nc~La~ 201 (307)
T KOG0316|consen 155 -EHEIVAGSVDGTVRTYDIRKGTLS-----SDYFGHPITSVSFSKDGNCSLAS 201 (307)
T ss_pred -ccEEEeeccCCcEEEEEeecceee-----hhhcCCcceeEEecCCCCEEEEe
Confidence 347888788899999998532221 11111123457777777654443
No 257
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=88.92 E-value=13 Score=31.28 Aligned_cols=176 Identities=13% Similarity=0.118 Sum_probs=92.8
Q ss_pred cCCcceEEEccCCC-EEEEecCCeEEEEecCC-ceEE-ee--eecCcCccCeEEcCCC-cEEEEe-CCCceEEEe-CCC-
Q 022967 76 LNGPEDVCVDRNGV-LYTATRDGWIKRLHKNG-TWEN-WK--LIGGDTLLGITTTQEN-EILVCD-ADKGLLKVT-EEG- 146 (289)
Q Consensus 76 ~~~p~~l~~d~~g~-l~v~~~~g~i~~~~~~g-~~~~-~~--~~~~~p~~gl~~d~~g-~l~v~~-~~~~i~~~~-~~g- 146 (289)
...-.+++...+|. |..+..++.+..++.++ ++.+ +. ...+... .+.+++.. .++++. .+..+.++| ..+
T Consensus 20 ~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svd-ql~w~~~~~d~~atas~dk~ir~wd~r~~k 98 (313)
T KOG1407|consen 20 VQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVD-QLCWDPKHPDLFATASGDKTIRIWDIRSGK 98 (313)
T ss_pred hhcceEEEEcccCceeeecccCCceEEEEecchhhhhhhcccCCCcchh-hheeCCCCCcceEEecCCceEEEEEeccCc
Confidence 45567788888776 44666777777776332 2111 11 1112233 56677533 455544 445577777 445
Q ss_pred -eEEEEeccCCccccCccceEEcCCCc-EEEeeCCCccCccccccccceecCCCEEEEEeCCCCeEEEeeCCCCCcceEE
Q 022967 147 -VTVLASHVNGSRINLADDLIAATDGS-IYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANGVA 224 (289)
Q Consensus 147 -~~~~~~~~~~~~~~~~~~l~~~~dG~-lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~p~gl~ 224 (289)
...+.. .+ ...-+...|+|. +-+++ ....|-.+|..+-+...-..-....+.++
T Consensus 99 ~~~~i~~--~~----eni~i~wsp~g~~~~~~~------------------kdD~it~id~r~~~~~~~~~~~~e~ne~~ 154 (313)
T KOG1407|consen 99 CTARIET--KG----ENINITWSPDGEYIAVGN------------------KDDRITFIDARTYKIVNEEQFKFEVNEIS 154 (313)
T ss_pred EEEEeec--cC----cceEEEEcCCCCEEEEec------------------CcccEEEEEecccceeehhcccceeeeee
Confidence 333222 11 123567778775 44433 23467777765333322222234567889
Q ss_pred EecCCCEEEEEeCCCCeEEEEEecCCCCcceeeeeccCCCCCCceeeCCCCCEEEE
Q 022967 225 LSKDEDYLVVCETFKFRCLKYWLKGESKEQTEIFVENLPGGPDNIKLAPDGSFWIA 280 (289)
Q Consensus 225 ~~~d~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~lwv~ 280 (289)
|+-+++ +++..++.+.|.++... .+..... +...+...-+|.+|++|+++..
T Consensus 155 w~~~nd-~Fflt~GlG~v~ILsyp--sLkpv~s-i~AH~snCicI~f~p~GryfA~ 206 (313)
T KOG1407|consen 155 WNNSND-LFFLTNGLGCVEILSYP--SLKPVQS-IKAHPSNCICIEFDPDGRYFAT 206 (313)
T ss_pred ecCCCC-EEEEecCCceEEEEecc--ccccccc-cccCCcceEEEEECCCCceEee
Confidence 987777 77776787888776433 2221111 1111122334889999976543
No 258
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=88.50 E-value=21 Score=33.19 Aligned_cols=125 Identities=14% Similarity=0.112 Sum_probs=70.6
Q ss_pred EEEecCCeEEEEe-cCCceEEeeeecCcC--ccCeEEc-CCCcEEEEeCCCceEEEe-CCC-eEEEEeccCCccccCccc
Q 022967 91 YTATRDGWIKRLH-KNGTWENWKLIGGDT--LLGITTT-QENEILVCDADKGLLKVT-EEG-VTVLASHVNGSRINLADD 164 (289)
Q Consensus 91 ~v~~~~g~i~~~~-~~g~~~~~~~~~~~p--~~gl~~d-~~g~l~v~~~~~~i~~~~-~~g-~~~~~~~~~~~~~~~~~~ 164 (289)
..++..|.|+.++ ..|+++......+.+ .+.+... .-|-||-++....+..++ +++ +..+.... ...+..
T Consensus 74 vlgt~~g~v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~----~~~~~s 149 (541)
T KOG4547|consen 74 VLGTPQGSVLLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKEQ----KPLVSS 149 (541)
T ss_pred EeecCCccEEEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeeccC----CCccce
Confidence 3566778888887 556666554433322 2022221 223466555545566666 455 22222211 135678
Q ss_pred eEEcCCCcEEEeeCCCccCccccccccceecCCCEEEEEeCCCCeEEEeeCCCCCc-ceEEEecC-----CCEEEEEeCC
Q 022967 165 LIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFA-NGVALSKD-----EDYLVVCETF 238 (289)
Q Consensus 165 l~~~~dG~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~p-~gl~~~~d-----~~~l~v~~~~ 238 (289)
+++.|||.+..+.. ..|..+|.+++++.....+...| +.++|..+ |+++.-++..
T Consensus 150 l~is~D~~~l~~as-------------------~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~ 210 (541)
T KOG4547|consen 150 LCISPDGKILLTAS-------------------RQIKVLDIETKEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAA 210 (541)
T ss_pred EEEcCCCCEEEecc-------------------ceEEEEEccCceEEEEecCCCcceEEEEEEEeccccccceeeecccc
Confidence 99999998877642 46888888888877666665555 34455443 5554444433
No 259
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=88.27 E-value=17 Score=31.94 Aligned_cols=81 Identities=14% Similarity=0.176 Sum_probs=49.0
Q ss_pred cCCeEEEEec-CCc-eEEeeeecCcCccCeEEcCCCcEEEEeCCCc-eEEE-e-CCC--eEEEEeccCCccccCccceEE
Q 022967 95 RDGWIKRLHK-NGT-WENWKLIGGDTLLGITTTQENEILVCDADKG-LLKV-T-EEG--VTVLASHVNGSRINLADDLIA 167 (289)
Q Consensus 95 ~~g~i~~~~~-~g~-~~~~~~~~~~p~~gl~~d~~g~l~v~~~~~~-i~~~-~-~~g--~~~~~~~~~~~~~~~~~~l~~ 167 (289)
..|.|+.+|. +=+ ...+.. ...+++.|+|+++|.+..+...+| |.|+ . ++| +..+-.. ........|++
T Consensus 151 t~GdV~l~d~~nl~~v~~I~a-H~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG---~~~~~IySL~F 226 (391)
T KOG2110|consen 151 TSGDVVLFDTINLQPVNTINA-HKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRG---TYPVSIYSLSF 226 (391)
T ss_pred CCceEEEEEcccceeeeEEEe-cCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCC---ceeeEEEEEEE
Confidence 4578888883 222 223332 233443899999999888766654 5554 4 777 4444322 22235678999
Q ss_pred cCCCcEEEeeCC
Q 022967 168 ATDGSIYFSVAS 179 (289)
Q Consensus 168 ~~dG~lyv~~~~ 179 (289)
++|+.+..+.+.
T Consensus 227 s~ds~~L~~sS~ 238 (391)
T KOG2110|consen 227 SPDSQFLAASSN 238 (391)
T ss_pred CCCCCeEEEecC
Confidence 999986655443
No 260
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=87.83 E-value=17 Score=31.46 Aligned_cols=151 Identities=13% Similarity=0.100 Sum_probs=73.3
Q ss_pred CcceEEEccCCCEEEE-ecCCeEEEEecCC------ceEEeeeecCcCccCeEEcCCCc-EEEEe-CCCc--eEEEe--C
Q 022967 78 GPEDVCVDRNGVLYTA-TRDGWIKRLHKNG------TWENWKLIGGDTLLGITTTQENE-ILVCD-ADKG--LLKVT--E 144 (289)
Q Consensus 78 ~p~~l~~d~~g~l~v~-~~~g~i~~~~~~g------~~~~~~~~~~~p~~gl~~d~~g~-l~v~~-~~~~--i~~~~--~ 144 (289)
.-.++++.+||.-+++ +.++.|..|+.+. +........+.|. -++|.+|-+ +.|+- .++. +|..+ .
T Consensus 88 ~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT-~V~FapDc~s~vv~~~~g~~l~vyk~~K~~ 166 (420)
T KOG2096|consen 88 EVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPT-RVVFAPDCKSVVVSVKRGNKLCVYKLVKKT 166 (420)
T ss_pred ceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCce-EEEECCCcceEEEEEccCCEEEEEEeeecc
Confidence 3566899888876644 4677777777221 1111112235677 888887765 33332 3343 45555 3
Q ss_pred CC-e-EEEEe--ccCCccccCccceEEc-CCCcEEEeeCCCccCccccccccceecCCCEEEEEeCCCCeEEEeeCCCCC
Q 022967 145 EG-V-TVLAS--HVNGSRINLADDLIAA-TDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFF 219 (289)
Q Consensus 145 ~g-~-~~~~~--~~~~~~~~~~~~l~~~-~dG~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~ 219 (289)
+| . ...+. ...-.+.+...-+.++ .++..|+...+ ....|..++.++.-+..+......
T Consensus 167 dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas----------------~dt~i~lw~lkGq~L~~idtnq~~ 230 (420)
T KOG2096|consen 167 DGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSAS----------------LDTKICLWDLKGQLLQSIDTNQSS 230 (420)
T ss_pred cCCCCcccccccccccchhcccceEEEeecCCceEEEEec----------------CCCcEEEEecCCceeeeecccccc
Confidence 45 2 11111 1111111222222222 24445554433 124577777763333333333222
Q ss_pred cceEEEecCCCEEEEEeCCCCeEEEEE
Q 022967 220 ANGVALSKDEDYLVVCETFKFRCLKYW 246 (289)
Q Consensus 220 p~gl~~~~d~~~l~v~~~~~~~i~~~~ 246 (289)
-.--+++|+|+++.++. .+-.|.+|.
T Consensus 231 n~~aavSP~GRFia~~g-FTpDVkVwE 256 (420)
T KOG2096|consen 231 NYDAAVSPDGRFIAVSG-FTPDVKVWE 256 (420)
T ss_pred ccceeeCCCCcEEEEec-CCCCceEEE
Confidence 33457899999666654 334444443
No 261
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=87.67 E-value=16 Score=32.07 Aligned_cols=70 Identities=13% Similarity=0.219 Sum_probs=46.6
Q ss_pred CccceEEcCCCcEEEeeCCCccCccccccccceecCCCEEEEE-e-CCCCeEEEeeCCCC--CcceEEEecCCCEEEEEe
Q 022967 161 LADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKY-D-PSLNETSILLDSLF--FANGVALSKDEDYLVVCE 236 (289)
Q Consensus 161 ~~~~l~~~~dG~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~-~-~~~~~~~~~~~~~~--~p~gl~~~~d~~~l~v~~ 236 (289)
....|++++||.+..+... .|.|.|+ . +++.++..+..|.. ....++|++|...|-++
T Consensus 175 ~lAalafs~~G~llATASe-----------------KGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ds~~L~~s- 236 (391)
T KOG2110|consen 175 PLAALAFSPDGTLLATASE-----------------KGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPDSQFLAAS- 236 (391)
T ss_pred ceeEEEECCCCCEEEEecc-----------------CceEEEEEEcCCccEeeeeeCCceeeEEEEEEECCCCCeEEEe-
Confidence 3458999999998776543 4666553 3 44445556656644 33568999999955544
Q ss_pred CCCCeEEEEEec
Q 022967 237 TFKFRCLKYWLK 248 (289)
Q Consensus 237 ~~~~~i~~~~~~ 248 (289)
..+..|-+|.++
T Consensus 237 S~TeTVHiFKL~ 248 (391)
T KOG2110|consen 237 SNTETVHIFKLE 248 (391)
T ss_pred cCCCeEEEEEec
Confidence 666888777764
No 262
>PF01731 Arylesterase: Arylesterase; InterPro: IPR002640 The serum paraoxonases/arylesterases are enzymes that catalyse the hydrolysis of the toxic metabolites of a variety of organophosphorus insecticides. The enzymes hydrolyse a broad spectrum of organophosphate substrates, including paraoxon and a number of aromatic carboxylic acid esters (e.g., phenyl acetate), and hence confer resistance to organophosphate toxicity []. Mammals have 3 distinct paraoxonase types, termed PON1-3 [, ]. In mice and humans, the PON genes are found on the same chromosome in close proximity. PON activity has been found in variety of tissues, with highest levels in liver and serum - the source of serum PON is thought to be the liver. Unlike mammals, fish and avian species lack paraoxonase activity. Human and rabbit PONs appear to have two distinct Ca2+ binding sites, one required for stability and one required for catalytic activity. The Ca2+ dependency of PONs suggests a mechanism of hydrolysis where Ca2+ acts as the electrophillic catalyst, like that proposed for phospholipase A2. The paraoxonase enzymes, PON1 and PON3, are high density lipoprotein (HDL)- associated proteins capable of preventing oxidative modification of low density lipoproteins (LPL) []. Although PON2 has oxidative properties, the enzyme does not associate with HDL. Within a given species, PON1, PON2 and PON3 share ~60% amino acid sequence identity, whereas between mammalian species particular PONs (1,2 or 3) share 79-90% identity at the amino acid level. Human PON1 and PON3 share numerous conserved phosphorylation and N-glycosylation sites; however, it is not known whether the PON proteins are modified at these sites, or whether modification at these sites is required for activity in vivo []. This family consists of arylesterases (Also known as serum paraoxonase) 3.1.1.2 from EC. These enzymes hydrolyse organophosphorus esters such as paraoxon and are found in the liver and blood. They confer resistance to organophosphate toxicity []. Human arylesterase (PON1) P27169 from SWISSPROT is associated with HDL and may protect against LDL oxidation [].; GO: 0004064 arylesterase activity
Probab=87.52 E-value=2.4 Score=29.21 Aligned_cols=47 Identities=9% Similarity=-0.097 Sum_probs=30.6
Q ss_pred cCCeEEEEecCCceEEeeeecCcCccCeEEcCCC-cEEEEeCC-CceEEEe
Q 022967 95 RDGWIKRLHKNGTWENWKLIGGDTLLGITTTQEN-EILVCDAD-KGLLKVT 143 (289)
Q Consensus 95 ~~g~i~~~~~~g~~~~~~~~~~~p~~gl~~d~~g-~l~v~~~~-~~i~~~~ 143 (289)
..+.|..+++ ++..........|+ ||++++++ .|||++.. +.|..+.
T Consensus 34 ~~~~Vvyyd~-~~~~~va~g~~~aN-GI~~s~~~k~lyVa~~~~~~I~vy~ 82 (86)
T PF01731_consen 34 PWGNVVYYDG-KEVKVVASGFSFAN-GIAISPDKKYLYVASSLAHSIHVYK 82 (86)
T ss_pred CCceEEEEeC-CEeEEeeccCCCCc-eEEEcCCCCEEEEEeccCCeEEEEE
Confidence 3455666663 33455556667899 99999876 59999865 3454443
No 263
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=87.17 E-value=11 Score=35.79 Aligned_cols=116 Identities=15% Similarity=0.118 Sum_probs=59.6
Q ss_pred CcCccCeEEcCCCcEEEEeCCC-ceEEEeC-CCeEEEEeccCCccccCccceEEcCCCcEEEeeCCCccCccccccccce
Q 022967 116 GDTLLGITTTQENEILVCDADK-GLLKVTE-EGVTVLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLE 193 (289)
Q Consensus 116 ~~p~~gl~~d~~g~l~v~~~~~-~i~~~~~-~g~~~~~~~~~~~~~~~~~~l~~~~dG~lyv~~~~~~~~~~~~~~~~~~ 193 (289)
+... ++|+.++|+...+.... .+..+.+ ++.+.+... .+..-....-|.+.-||++.+..+...
T Consensus 721 dqIf-~~AWSpdGr~~AtVcKDg~~rVy~Prs~e~pv~Eg-~gpvgtRgARi~wacdgr~viv~Gfdk------------ 786 (1012)
T KOG1445|consen 721 DQIF-GIAWSPDGRRIATVCKDGTLRVYEPRSREQPVYEG-KGPVGTRGARILWACDGRIVIVVGFDK------------ 786 (1012)
T ss_pred Ccee-EEEECCCCcceeeeecCceEEEeCCCCCCCccccC-CCCccCcceeEEEEecCcEEEEecccc------------
Confidence 4456 89999999876654333 3555553 332222221 111111222456666777666544311
Q ss_pred ecCCCEEEEEeCCCCeEE----EeeCCCCCcceE--EEecCCCEEEEEeCCCCeEEEEEec
Q 022967 194 AKPHGKLLKYDPSLNETS----ILLDSLFFANGV--ALSKDEDYLVVCETFKFRCLKYWLK 248 (289)
Q Consensus 194 ~~~~g~i~~~~~~~~~~~----~~~~~~~~p~gl--~~~~d~~~l~v~~~~~~~i~~~~~~ 248 (289)
...-.|..||.++-... ...+ ..|.-+ ..++|.+.|+++.-+...|+.|.+.
T Consensus 787 -~SeRQv~~Y~Aq~l~~~pl~t~~lD--vaps~LvP~YD~Ds~~lfltGKGD~~v~~yEv~ 844 (1012)
T KOG1445|consen 787 -SSERQVQMYDAQTLDLRPLYTQVLD--VAPSPLVPHYDYDSNVLFLTGKGDRFVNMYEVI 844 (1012)
T ss_pred -cchhhhhhhhhhhccCCcceeeeec--ccCccccccccCCCceEEEecCCCceEEEEEec
Confidence 01123555554421111 1111 112222 3567888899998888899998864
No 264
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=87.03 E-value=19 Score=30.93 Aligned_cols=50 Identities=12% Similarity=0.156 Sum_probs=33.5
Q ss_pred CEEEEEeCCCCeEEEeeCCC-CCcceEEEecCCCEEEEEeCCCCeEEEEEec
Q 022967 198 GKLLKYDPSLNETSILLDSL-FFANGVALSKDEDYLVVCETFKFRCLKYWLK 248 (289)
Q Consensus 198 g~i~~~~~~~~~~~~~~~~~-~~p~gl~~~~d~~~l~v~~~~~~~i~~~~~~ 248 (289)
+.|-.+|+..+...-...+. ....++..+++|. ...++...+.+.++|+.
T Consensus 196 n~ikvWd~r~~d~~~~lsGh~DtIt~lsls~~gs-~llsnsMd~tvrvwd~r 246 (338)
T KOG0265|consen 196 NDIKVWDLRKNDGLYTLSGHADTITGLSLSRYGS-FLLSNSMDNTVRVWDVR 246 (338)
T ss_pred CceeeeccccCcceEEeecccCceeeEEeccCCC-ccccccccceEEEEEec
Confidence 45666677555544444443 3457899999998 55666777888888875
No 265
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=86.90 E-value=20 Score=35.48 Aligned_cols=148 Identities=12% Similarity=0.152 Sum_probs=80.0
Q ss_pred CcceEEEccCCCEE--EEecCCeEEEEe-cCC-ceEEeeeecCcCccCeEEcCCCcEEEEeCCC-ceEEEe-CCC--eEE
Q 022967 78 GPEDVCVDRNGVLY--TATRDGWIKRLH-KNG-TWENWKLIGGDTLLGITTTQENEILVCDADK-GLLKVT-EEG--VTV 149 (289)
Q Consensus 78 ~p~~l~~d~~g~l~--v~~~~g~i~~~~-~~g-~~~~~~~~~~~p~~gl~~d~~g~l~v~~~~~-~i~~~~-~~g--~~~ 149 (289)
+.-++++.|. +-| ++..+|.|..|| .=| -+.+|....|... |+.|++.+-|+|+..+. .|-.++ +.. +-.
T Consensus 11 RvKglsFHP~-rPwILtslHsG~IQlWDYRM~tli~rFdeHdGpVR-gv~FH~~qplFVSGGDDykIkVWnYk~rrclft 88 (1202)
T KOG0292|consen 11 RVKGLSFHPK-RPWILTSLHSGVIQLWDYRMGTLIDRFDEHDGPVR-GVDFHPTQPLFVSGGDDYKIKVWNYKTRRCLFT 88 (1202)
T ss_pred cccceecCCC-CCEEEEeecCceeeeehhhhhhHHhhhhccCCccc-eeeecCCCCeEEecCCccEEEEEecccceehhh
Confidence 3455677765 444 555789888888 223 2445555556666 99999999999986443 233333 222 111
Q ss_pred EEeccCCccccCccceEEcCCCcEEEeeCCCccCccccccccceecCCCEEEEEeCCCCeEEEeeCCCCCc-ceEEEecC
Q 022967 150 LASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFA-NGVALSKD 228 (289)
Q Consensus 150 ~~~~~~~~~~~~~~~l~~~~dG~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~p-~gl~~~~d 228 (289)
+... +-..+.+.+.+.- =|+-..+ ..-.|..++-++++...+..|..+- ---.|+|.
T Consensus 89 L~GH-----lDYVRt~~FHhey-PWIlSAS----------------DDQTIrIWNwqsr~~iavltGHnHYVMcAqFhpt 146 (1202)
T KOG0292|consen 89 LLGH-----LDYVRTVFFHHEY-PWILSAS----------------DDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHPT 146 (1202)
T ss_pred hccc-----cceeEEeeccCCC-ceEEEcc----------------CCCeEEEEeccCCceEEEEecCceEEEeeccCCc
Confidence 1111 1123333443332 1222211 1123333444444443344443322 12357886
Q ss_pred CCEEEEEeCCCCeEEEEEecCC
Q 022967 229 EDYLVVCETFKFRCLKYWLKGE 250 (289)
Q Consensus 229 ~~~l~v~~~~~~~i~~~~~~~~ 250 (289)
.+ ++|+.+-...|++||+.|-
T Consensus 147 ED-lIVSaSLDQTVRVWDisGL 167 (1202)
T KOG0292|consen 147 ED-LIVSASLDQTVRVWDISGL 167 (1202)
T ss_pred cc-eEEEecccceEEEEeecch
Confidence 66 8899898999999999864
No 266
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=86.64 E-value=20 Score=31.04 Aligned_cols=61 Identities=15% Similarity=0.068 Sum_probs=36.2
Q ss_pred CCCcceEEEecCCCEEEEEeCCCCeEEEEEecCCCCcceeeeeccCCCCCCceeeCCCCCEEEEE
Q 022967 217 LFFANGVALSKDEDYLVVCETFKFRCLKYWLKGESKEQTEIFVENLPGGPDNIKLAPDGSFWIAI 281 (289)
Q Consensus 217 ~~~p~gl~~~~d~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~lwv~~ 281 (289)
...|..+.++|.|+.|-++ ....|..|..... ...+.+.+...+-..+|..+.+|.+.+.+
T Consensus 331 g~~p~RL~lsP~g~~lA~s--~gs~l~~~~se~g--~~~~~~e~~h~~~Is~is~~~~g~~~atc 391 (420)
T KOG2096|consen 331 GSEPVRLELSPSGDSLAVS--FGSDLKVFASEDG--KDYPELEDIHSTTISSISYSSDGKYIATC 391 (420)
T ss_pred CCCceEEEeCCCCcEEEee--cCCceEEEEcccC--ccchhHHHhhcCceeeEEecCCCcEEeee
Confidence 4567789999999966555 3356776654321 11111211222345678899999776654
No 267
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=86.64 E-value=13 Score=30.35 Aligned_cols=51 Identities=10% Similarity=0.185 Sum_probs=32.1
Q ss_pred CCcEEEEeCC-CceEEEe-CCC-eEEEEec--------cCCccccCccceEEcCCC-cEEEee
Q 022967 127 ENEILVCDAD-KGLLKVT-EEG-VTVLASH--------VNGSRINLADDLIAATDG-SIYFSV 177 (289)
Q Consensus 127 ~g~l~v~~~~-~~i~~~~-~~g-~~~~~~~--------~~~~~~~~~~~l~~~~dG-~lyv~~ 177 (289)
+|.+|.--.. .+|.|++ .+| +....+. ......+.+|||+.++++ ++|++-
T Consensus 185 dG~lyANVw~t~~I~rI~p~sGrV~~widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTG 247 (262)
T COG3823 185 DGELYANVWQTTRIARIDPDSGRVVAWIDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLITG 247 (262)
T ss_pred ccEEEEeeeeecceEEEcCCCCcEEEEEEccCCchhcCccccccccccceeecCcCCeEEEec
Confidence 6776654322 5699999 677 4333221 122234578899999976 899874
No 268
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=86.53 E-value=33 Score=33.29 Aligned_cols=160 Identities=15% Similarity=0.160 Sum_probs=75.9
Q ss_pred CcceEEEccCCCEEEEecCCeEEEEecC-CceEEeeeecCcCccCeEEcCCCcEEEEeCCC-ceEEEe-CCC--eEEEEe
Q 022967 78 GPEDVCVDRNGVLYTATRDGWIKRLHKN-GTWENWKLIGGDTLLGITTTQENEILVCDADK-GLLKVT-EEG--VTVLAS 152 (289)
Q Consensus 78 ~p~~l~~d~~g~l~v~~~~g~i~~~~~~-g~~~~~~~~~~~p~~gl~~d~~g~l~v~~~~~-~i~~~~-~~g--~~~~~~ 152 (289)
.-+++.+..+..+..+..++.|..|+.+ ++... .-.++..+ +..|-+.++..+....+ .+..++ .+. ++.+.
T Consensus 375 dVRsl~vS~d~~~~~Sga~~SikiWn~~t~kciR-Ti~~~y~l-~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~l~Eti~- 451 (888)
T KOG0306|consen 375 DVRSLCVSSDSILLASGAGESIKIWNRDTLKCIR-TITCGYIL-ASKFVPGDRYIVLGTKNGELQVFDLASASLVETIR- 451 (888)
T ss_pred heeEEEeecCceeeeecCCCcEEEEEccCcceeE-EeccccEE-EEEecCCCceEEEeccCCceEEEEeehhhhhhhhh-
Confidence 3556777666555555567778888743 43221 12344555 55565544433333333 366666 444 33321
Q ss_pred ccCCccccCccceEEcCCCcEEEeeCCCc-cCccccccccceecCCCEEEEEeCCCCeEEEeeCCCCCcceEEEecCCCE
Q 022967 153 HVNGSRINLADDLIAATDGSIYFSVASTK-FGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANGVALSKDEDY 231 (289)
Q Consensus 153 ~~~~~~~~~~~~l~~~~dG~lyv~~~~~~-~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~p~gl~~~~d~~~ 231 (289)
... .....|+..||+.=+++.+.-+ ..+.++-...-++....+++.+..+ +. .+--...-.+.++||+++
T Consensus 452 AHd----gaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~--rt---Lel~ddvL~v~~Spdgk~ 522 (888)
T KOG0306|consen 452 AHD----GAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHT--RT---LELEDDVLCVSVSPDGKL 522 (888)
T ss_pred ccc----cceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccc--eE---EeccccEEEEEEcCCCcE
Confidence 111 1356778888876555543210 0000000000000000111111100 00 111122345689999997
Q ss_pred EEEEeCCCCeEEEEEecCC
Q 022967 232 LVVCETFKFRCLKYWLKGE 250 (289)
Q Consensus 232 l~v~~~~~~~i~~~~~~~~ 250 (289)
|-|+ .-++++-+|-+++-
T Consensus 523 LaVs-LLdnTVkVyflDtl 540 (888)
T KOG0306|consen 523 LAVS-LLDNTVKVYFLDTL 540 (888)
T ss_pred EEEE-eccCeEEEEEecce
Confidence 6666 55689999988753
No 269
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=86.33 E-value=11 Score=32.68 Aligned_cols=145 Identities=14% Similarity=0.117 Sum_probs=70.2
Q ss_pred EEEcc-CCCEE-EEecCCeEEEEecCC-ceEEeee-ecCcCccCeEEcCCCc-EEEEeCC-CceEEEe-C-CC--eEEEE
Q 022967 82 VCVDR-NGVLY-TATRDGWIKRLHKNG-TWENWKL-IGGDTLLGITTTQENE-ILVCDAD-KGLLKVT-E-EG--VTVLA 151 (289)
Q Consensus 82 l~~d~-~g~l~-v~~~~g~i~~~~~~g-~~~~~~~-~~~~p~~gl~~d~~g~-l~v~~~~-~~i~~~~-~-~g--~~~~~ 151 (289)
+++.| +-.++ +++...++-.+..++ ....... ..+... -|.+.++|+ ||..... ..|..+| . .+ +-.+.
T Consensus 213 ~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvT-hL~~~edGn~lfsGaRk~dkIl~WDiR~~~~pv~~L~ 291 (406)
T KOG2919|consen 213 FAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVT-HLQWCEDGNKLFSGARKDDKILCWDIRYSRDPVYALE 291 (406)
T ss_pred eeccCCCCcceeeecccceeeeEecCCCCceeeecccCCCee-eEEeccCcCeecccccCCCeEEEEeehhccchhhhhh
Confidence 45555 22233 665444444444333 2222222 222233 677888885 5554432 3577776 2 22 11111
Q ss_pred eccCCccccCccceEEcCCCcEEEeeCCCccCccccccccceecCCCEEEEEeCCC-Ce-EEEeeCCCCCcceEEEecCC
Q 022967 152 SHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSL-NE-TSILLDSLFFANGVALSKDE 229 (289)
Q Consensus 152 ~~~~~~~~~~~~~l~~~~dG~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~-~~-~~~~~~~~~~p~gl~~~~d~ 229 (289)
........+. -+..+|+|++..+-.. .|.|.++|.++ +. +.++..-....||++++|-=
T Consensus 292 rhv~~TNQRI--~FDld~~~~~LasG~t-----------------dG~V~vwdlk~~gn~~sv~~~~sd~vNgvslnP~m 352 (406)
T KOG2919|consen 292 RHVGDTNQRI--LFDLDPKGEILASGDT-----------------DGSVRVWDLKDLGNEVSVTGNYSDTVNGVSLNPIM 352 (406)
T ss_pred hhccCccceE--EEecCCCCceeeccCC-----------------CccEEEEecCCCCCcccccccccccccceecCccc
Confidence 1111111111 2344567777665322 46677777664 33 33333334567899999873
Q ss_pred CEEEEEeCCCCeEEEEEec
Q 022967 230 DYLVVCETFKFRCLKYWLK 248 (289)
Q Consensus 230 ~~l~v~~~~~~~i~~~~~~ 248 (289)
- +..+ ...++++.+.-+
T Consensus 353 p-ilat-ssGqr~f~~~~d 369 (406)
T KOG2919|consen 353 P-ILAT-SSGQRIFKYPKD 369 (406)
T ss_pred c-eeee-ccCceeecCCCc
Confidence 2 4444 445888877544
No 270
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=86.28 E-value=9 Score=35.71 Aligned_cols=106 Identities=12% Similarity=0.129 Sum_probs=59.8
Q ss_pred CeEEc-CCCcEEEEeCCCceEEEe-CCC--eEEEEeccCCccccCccceEEcCCCcEEEeeCCCccCccccccccceecC
Q 022967 121 GITTT-QENEILVCDADKGLLKVT-EEG--VTVLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKP 196 (289)
Q Consensus 121 gl~~d-~~g~l~v~~~~~~i~~~~-~~g--~~~~~~~~~~~~~~~~~~l~~~~dG~lyv~~~~~~~~~~~~~~~~~~~~~ 196 (289)
.|..+ +.-.||++..+..|||++ ..| +.++..... ..+.+.+.+-..|..+.+ .
T Consensus 138 Dm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~~~~-----~lN~v~in~~hgLla~Gt-----------------~ 195 (703)
T KOG2321|consen 138 DMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFETDSG-----ELNVVSINEEHGLLACGT-----------------E 195 (703)
T ss_pred cccccCCCccEEEeecCcceEEEEccccccccccccccc-----cceeeeecCccceEEecc-----------------c
Confidence 34444 344699988888899999 778 565543321 234455555333333211 2
Q ss_pred CCEEEEEeCCCCeEEE-e-----------eCCCCCcceEEEecCCCEEEEEeCCCCeEEEEEecC
Q 022967 197 HGKLLKYDPSLNETSI-L-----------LDSLFFANGVALSKDEDYLVVCETFKFRCLKYWLKG 249 (289)
Q Consensus 197 ~g~i~~~~~~~~~~~~-~-----------~~~~~~p~gl~~~~d~~~l~v~~~~~~~i~~~~~~~ 249 (289)
.|.|-.+||..+.... + .+....+..+.|+.+|=.+-|. +..+.++.||+-.
T Consensus 196 ~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVG-ts~G~v~iyDLRa 259 (703)
T KOG2321|consen 196 DGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVG-TSTGSVLIYDLRA 259 (703)
T ss_pred CceEEEecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEee-ccCCcEEEEEccc
Confidence 3566666765433211 1 1123345677888766555555 5567889998754
No 271
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=86.19 E-value=32 Score=32.89 Aligned_cols=91 Identities=15% Similarity=0.180 Sum_probs=45.8
Q ss_pred EEEccCCCEEEEecCCeEEEEecCCceEEeeeecCcCccCeEEcCCCcEEEEeCCCceEEEeCCC--eEEEEeccCCccc
Q 022967 82 VCVDRNGVLYTATRDGWIKRLHKNGTWENWKLIGGDTLLGITTTQENEILVCDADKGLLKVTEEG--VTVLASHVNGSRI 159 (289)
Q Consensus 82 l~~d~~g~l~v~~~~g~i~~~~~~g~~~~~~~~~~~p~~gl~~d~~g~l~v~~~~~~i~~~~~~g--~~~~~~~~~~~~~ 159 (289)
++.-+++.+..++.+..|..|..+.....+.....-.. |+++-+++.+.-|..+.-|..++-+| +...... .
T Consensus 146 v~~l~e~~~vTgsaDKtIklWk~~~~l~tf~gHtD~VR-gL~vl~~~~flScsNDg~Ir~w~~~ge~l~~~~gh-----t 219 (745)
T KOG0301|consen 146 VASLPENTYVTGSADKTIKLWKGGTLLKTFSGHTDCVR-GLAVLDDSHFLSCSNDGSIRLWDLDGEVLLEMHGH-----T 219 (745)
T ss_pred eeecCCCcEEeccCcceeeeccCCchhhhhccchhhee-eeEEecCCCeEeecCCceEEEEeccCceeeeeecc-----c
Confidence 44444554445555555555543222333332223345 78876666666565433344455445 4333221 1
Q ss_pred cCccceEEcCCCcEEEeeC
Q 022967 160 NLADDLIAATDGSIYFSVA 178 (289)
Q Consensus 160 ~~~~~l~~~~dG~lyv~~~ 178 (289)
++.+.+....++.+.++.+
T Consensus 220 n~vYsis~~~~~~~Ivs~g 238 (745)
T KOG0301|consen 220 NFVYSISMALSDGLIVSTG 238 (745)
T ss_pred eEEEEEEecCCCCeEEEec
Confidence 3566777666666777764
No 272
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=85.99 E-value=8.3 Score=34.79 Aligned_cols=103 Identities=15% Similarity=0.087 Sum_probs=55.1
Q ss_pred ccceEEcCCCcE-EEeeCCCccCccccccccceecCCCEEEEEeCCCCeEEEeeCCCCC--cceEEEecCCCEEEEEeCC
Q 022967 162 ADDLIAATDGSI-YFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFF--ANGVALSKDEDYLVVCETF 238 (289)
Q Consensus 162 ~~~l~~~~dG~l-yv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~--p~gl~~~~d~~~l~v~~~~ 238 (289)
...+.+.|||+. .++... .+.....|+.+|.++|+... +.+.. ..++.|.+|++.+|.+...
T Consensus 126 ~~~~~~Spdg~~la~~~s~-------------~G~e~~~l~v~Dl~tg~~l~--d~i~~~~~~~~~W~~d~~~~~y~~~~ 190 (414)
T PF02897_consen 126 LGGFSVSPDGKRLAYSLSD-------------GGSEWYTLRVFDLETGKFLP--DGIENPKFSSVSWSDDGKGFFYTRFD 190 (414)
T ss_dssp EEEEEETTTSSEEEEEEEE-------------TTSSEEEEEEEETTTTEEEE--EEEEEEESEEEEECTTSSEEEEEECS
T ss_pred eeeeeECCCCCEEEEEecC-------------CCCceEEEEEEECCCCcCcC--CcccccccceEEEeCCCCEEEEEEeC
Confidence 346778899863 333211 11222468889998886532 22222 2338999999988877643
Q ss_pred C----------CeEEEEEecCCCCcceeeeeccCCCC-CCceeeCCCCCEEE
Q 022967 239 K----------FRCLKYWLKGESKEQTEIFVENLPGG-PDNIKLAPDGSFWI 279 (289)
Q Consensus 239 ~----------~~i~~~~~~~~~~~~~~~~~~~~~~~-p~~i~~d~~G~lwv 279 (289)
. ++|+++.+.........+|......+ --++..+.||.+.+
T Consensus 191 ~~~~~~~~~~~~~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~ 242 (414)
T PF02897_consen 191 EDQRTSDSGYPRQVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLF 242 (414)
T ss_dssp TTTSS-CCGCCEEEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEE
T ss_pred cccccccCCCCcEEEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEE
Confidence 3 34777776543323334443222222 23566778886543
No 273
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=85.94 E-value=2 Score=42.02 Aligned_cols=65 Identities=17% Similarity=0.232 Sum_probs=49.1
Q ss_pred cceEEEccCCCEEEEecCCeEEEEecCCce-EEeeeecCcCccCeEEcCCCcEEEEeCCCceEEEe
Q 022967 79 PEDVCVDRNGVLYTATRDGWIKRLHKNGTW-ENWKLIGGDTLLGITTTQENEILVCDADKGLLKVT 143 (289)
Q Consensus 79 p~~l~~d~~g~l~v~~~~g~i~~~~~~g~~-~~~~~~~~~p~~gl~~d~~g~l~v~~~~~~i~~~~ 143 (289)
=.+++-+.+|.|.|++.+|.|..++..|+. .+...+.|.|+.||-+..||+..++....-|+.++
T Consensus 580 Fs~~aTt~~G~iavgs~~G~IRLyd~~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc~tyLlLi~ 645 (794)
T PF08553_consen 580 FSCFATTEDGYIAVGSNKGDIRLYDRLGKRAKTALPGLGDPIIGIDVTADGKWILATCKTYLLLID 645 (794)
T ss_pred ceEEEecCCceEEEEeCCCcEEeecccchhhhhcCCCCCCCeeEEEecCCCcEEEEeecceEEEEE
Confidence 356788889999999999999999966632 22233457787699999999988887766676665
No 274
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=85.50 E-value=26 Score=31.22 Aligned_cols=149 Identities=15% Similarity=0.158 Sum_probs=75.3
Q ss_pred cceEEEccCCCEEEEecCCeEEEEe-cCCceEEeeeecC--cCccCeEEcCCC---cEEEEeCC---CceEEEe---CCC
Q 022967 79 PEDVCVDRNGVLYTATRDGWIKRLH-KNGTWENWKLIGG--DTLLGITTTQEN---EILVCDAD---KGLLKVT---EEG 146 (289)
Q Consensus 79 p~~l~~d~~g~l~v~~~~g~i~~~~-~~g~~~~~~~~~~--~p~~gl~~d~~g---~l~v~~~~---~~i~~~~---~~g 146 (289)
-+++.+.+||.+.+........+|+ .+|..-....... .....+.|..|+ .|+++... .++...+ .++
T Consensus 189 V~DL~FS~dgk~lasig~d~~~VW~~~~g~~~a~~t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~ 268 (398)
T KOG0771|consen 189 VKDLDFSPDGKFLASIGADSARVWSVNTGAALARKTPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSG 268 (398)
T ss_pred cccceeCCCCcEEEEecCCceEEEEeccCchhhhcCCcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeecc
Confidence 4668888999877554333444554 3552111111111 111134454444 56666432 2232222 111
Q ss_pred --eEEEEeccCCccccCccceEEcCCCcEEE-eeCCCccCccccccccceecCCCEEEEEeCCCCeEEEee--CCCCCcc
Q 022967 147 --VTVLASHVNGSRINLADDLIAATDGSIYF-SVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILL--DSLFFAN 221 (289)
Q Consensus 147 --~~~~~~~~~~~~~~~~~~l~~~~dG~lyv-~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~--~~~~~p~ 221 (289)
+-.... .-.+++....|+|+.||++.. +.. .|.|..|+..+-+...+. .......
T Consensus 269 ~~~l~~~~--~~~~~~siSsl~VS~dGkf~AlGT~------------------dGsVai~~~~~lq~~~~vk~aH~~~VT 328 (398)
T KOG0771|consen 269 SNFLRLRK--KIKRFKSISSLAVSDDGKFLALGTM------------------DGSVAIYDAKSLQRLQYVKEAHLGFVT 328 (398)
T ss_pred ccccchhh--hhhccCcceeEEEcCCCcEEEEecc------------------CCcEEEEEeceeeeeEeehhhheeeee
Confidence 111111 112345788999999998543 432 367888876543333332 1234678
Q ss_pred eEEEecCCCEEEEEeCCCCeEEEEEec
Q 022967 222 GVALSKDEDYLVVCETFKFRCLKYWLK 248 (289)
Q Consensus 222 gl~~~~d~~~l~v~~~~~~~i~~~~~~ 248 (289)
++.|+||.+.+-= -+..++...+.+.
T Consensus 329 ~ltF~Pdsr~~~s-vSs~~~~~v~~l~ 354 (398)
T KOG0771|consen 329 GLTFSPDSRYLAS-VSSDNEAAVTKLA 354 (398)
T ss_pred eEEEcCCcCcccc-cccCCceeEEEEe
Confidence 9999999884433 3344555555444
No 275
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=85.05 E-value=26 Score=30.84 Aligned_cols=53 Identities=19% Similarity=0.140 Sum_probs=36.6
Q ss_pred CCEEEEEeCCCCeEEE-eeCCCCCcceEEEecCCCEEEEEeCCCCeEEEEEecCC
Q 022967 197 HGKLLKYDPSLNETSI-LLDSLFFANGVALSKDEDYLVVCETFKFRCLKYWLKGE 250 (289)
Q Consensus 197 ~g~i~~~~~~~~~~~~-~~~~~~~p~gl~~~~d~~~l~v~~~~~~~i~~~~~~~~ 250 (289)
...|-.+|..++.... +.....+..+++|+|.|++|. +...+..|.+||+...
T Consensus 313 DktIk~wdv~tg~cL~tL~ghdnwVr~~af~p~Gkyi~-ScaDDktlrvwdl~~~ 366 (406)
T KOG0295|consen 313 DKTIKIWDVSTGMCLFTLVGHDNWVRGVAFSPGGKYIL-SCADDKTLRVWDLKNL 366 (406)
T ss_pred cceEEEEeccCCeEEEEEecccceeeeeEEcCCCeEEE-EEecCCcEEEEEeccc
Confidence 3556666776665432 334567788999999999554 4466788999998753
No 276
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=84.60 E-value=11 Score=33.26 Aligned_cols=92 Identities=18% Similarity=0.156 Sum_probs=53.5
Q ss_pred cEEEEeCC--CceEEEeCCC--eEEEEeccCCccccCccceEEcCCC-cEEEeeCCCccCccccccccceecCCCEEEEE
Q 022967 129 EILVCDAD--KGLLKVTEEG--VTVLASHVNGSRINLADDLIAATDG-SIYFSVASTKFGLHNWGLDLLEAKPHGKLLKY 203 (289)
Q Consensus 129 ~l~v~~~~--~~i~~~~~~g--~~~~~~~~~~~~~~~~~~l~~~~dG-~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~ 203 (289)
-||++... ..|+.++.++ .+.+.. .......-+.+++++ .|||+... +....-.||++
T Consensus 250 ~l~~s~~~G~~hly~~~~~~~~~~~lT~----G~~~V~~i~~~d~~~~~iyf~a~~-------------~~p~~r~lY~v 312 (353)
T PF00930_consen 250 FLWISERDGYRHLYLYDLDGGKPRQLTS----GDWEVTSILGWDEDNNRIYFTANG-------------DNPGERHLYRV 312 (353)
T ss_dssp EEEEEETTSSEEEEEEETTSSEEEESS-----SSS-EEEEEEEECTSSEEEEEESS-------------GGTTSBEEEEE
T ss_pred EEEEEEcCCCcEEEEEcccccceecccc----CceeecccceEcCCCCEEEEEecC-------------CCCCceEEEEE
Confidence 46666632 3588888444 443321 122222345677765 68887653 11233479999
Q ss_pred eCC-CCeEEEeeCCCCCcceEEEecCCCEEEEEeC
Q 022967 204 DPS-LNETSILLDSLFFANGVALSKDEDYLVVCET 237 (289)
Q Consensus 204 ~~~-~~~~~~~~~~~~~p~gl~~~~d~~~l~v~~~ 237 (289)
+.+ +++.+.+-.....-..+.++|+++++....+
T Consensus 313 ~~~~~~~~~~LT~~~~~~~~~~~Spdg~y~v~~~s 347 (353)
T PF00930_consen 313 SLDSGGEPKCLTCEDGDHYSASFSPDGKYYVDTYS 347 (353)
T ss_dssp ETTETTEEEESSTTSSTTEEEEE-TTSSEEEEEEE
T ss_pred EeCCCCCeEeccCCCCCceEEEECCCCCEEEEEEc
Confidence 998 7887776443332248899999997666544
No 277
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=84.57 E-value=29 Score=30.86 Aligned_cols=83 Identities=14% Similarity=0.146 Sum_probs=51.9
Q ss_pred cCCCEEEEEeCCCCeEEEee-CCCCC-cceEEEecCCCEEEEEeCCCCeEEEEEecCCCCcceeeeeccCCCCCCceeeC
Q 022967 195 KPHGKLLKYDPSLNETSILL-DSLFF-ANGVALSKDEDYLVVCETFKFRCLKYWLKGESKEQTEIFVENLPGGPDNIKLA 272 (289)
Q Consensus 195 ~~~g~i~~~~~~~~~~~~~~-~~~~~-p~gl~~~~d~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d 272 (289)
...+.+-.||+..++.-+.. +-..+ -..+...|+++.+|++++. ..+..||..+..+..+ +.....|.++.|-..
T Consensus 223 T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~-g~l~~FD~r~~kl~g~--~~kg~tGsirsih~h 299 (412)
T KOG3881|consen 223 TRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSGNFIYTGNTK-GQLAKFDLRGGKLLGC--GLKGITGSIRSIHCH 299 (412)
T ss_pred ecceeEEEecCcccCcceeEeccccCcceeeeecCCCcEEEEeccc-chhheecccCceeecc--ccCCccCCcceEEEc
Confidence 34577888998854432221 11222 3456788999999999775 7899999876544322 233445667777777
Q ss_pred CCCCEEEE
Q 022967 273 PDGSFWIA 280 (289)
Q Consensus 273 ~~G~lwv~ 280 (289)
+.+.+...
T Consensus 300 p~~~~las 307 (412)
T KOG3881|consen 300 PTHPVLAS 307 (412)
T ss_pred CCCceEEe
Confidence 66555443
No 278
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=83.99 E-value=22 Score=33.05 Aligned_cols=85 Identities=16% Similarity=0.158 Sum_probs=53.1
Q ss_pred CEEEEecCCeEEEEecCCceEEeee-ecCcCccCeEEcCCCcEEEEeCCCceEEEe-CCC-eE-EEEeccCCccccCccc
Q 022967 89 VLYTATRDGWIKRLHKNGTWENWKL-IGGDTLLGITTTQENEILVCDADKGLLKVT-EEG-VT-VLASHVNGSRINLADD 164 (289)
Q Consensus 89 ~l~v~~~~g~i~~~~~~g~~~~~~~-~~~~p~~gl~~d~~g~l~v~~~~~~i~~~~-~~g-~~-~~~~~~~~~~~~~~~~ 164 (289)
.+.+.+.+|++..++..|+++.... .++... .-.+.+||.=.++....|+.++- .+| ++ .++.. -...+.
T Consensus 77 ~~~i~s~DGkf~il~k~~rVE~sv~AH~~A~~-~gRW~~dGtgLlt~GEDG~iKiWSrsGMLRStl~Q~-----~~~v~c 150 (737)
T KOG1524|consen 77 TLLICSNDGRFVILNKSARVERSISAHAAAIS-SGRWSPDGAGLLTAGEDGVIKIWSRSGMLRSTVVQN-----EESIRC 150 (737)
T ss_pred eEEEEcCCceEEEecccchhhhhhhhhhhhhh-hcccCCCCceeeeecCCceEEEEeccchHHHHHhhc-----CceeEE
Confidence 3447778899999988888775443 233334 45577888755655557777766 677 43 23221 124667
Q ss_pred eEEcCCC-cEEEeeCC
Q 022967 165 LIAATDG-SIYFSVAS 179 (289)
Q Consensus 165 l~~~~dG-~lyv~~~~ 179 (289)
++++|+. ++.++.+.
T Consensus 151 ~~W~p~S~~vl~c~g~ 166 (737)
T KOG1524|consen 151 ARWAPNSNSIVFCQGG 166 (737)
T ss_pred EEECCCCCceEEecCC
Confidence 8888875 56666554
No 279
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=83.97 E-value=35 Score=31.38 Aligned_cols=147 Identities=16% Similarity=0.128 Sum_probs=66.0
Q ss_pred eEeccCCcCCcceEEEccCCCEEEEecCCeEEEEecCCceEEeeeecCcCccCeEEcCCCcEEEEeCCCceEEEe--CCC
Q 022967 69 TRLGEGILNGPEDVCVDRNGVLYTATRDGWIKRLHKNGTWENWKLIGGDTLLGITTTQENEILVCDADKGLLKVT--EEG 146 (289)
Q Consensus 69 ~~~~~~~~~~p~~l~~d~~g~l~v~~~~g~i~~~~~~g~~~~~~~~~~~p~~gl~~d~~g~l~v~~~~~~i~~~~--~~g 146 (289)
..++.. -..|..+...|+|+..+-..+|....+...+-... . .+... ..+|...+++.+.+..+.|..+. ++.
T Consensus 26 k~lg~~-~~~p~~ls~npngr~v~V~g~geY~iyt~~~~r~k-~--~G~g~-~~vw~~~n~yAv~~~~~~I~I~kn~~~~ 100 (443)
T PF04053_consen 26 KELGSC-EIYPQSLSHNPNGRFVLVCGDGEYEIYTALAWRNK-A--FGSGL-SFVWSSRNRYAVLESSSTIKIYKNFKNE 100 (443)
T ss_dssp EEEEE--SS--SEEEE-TTSSEEEEEETTEEEEEETTTTEEE-E--EEE-S-EEEE-TSSEEEEE-TTS-EEEEETTEE-
T ss_pred ccCCCC-CcCCeeEEECCCCCEEEEEcCCEEEEEEccCCccc-c--cCcee-EEEEecCccEEEEECCCeEEEEEcCccc
Confidence 344443 24599999999999886577776666663222111 1 13334 56666666655556434343322 111
Q ss_pred -eEEEEeccCCccccCccceEEcCCCcEEEeeCCCccCccccccccceecCCCEEEEEeCCCCeEEEeeCCCCCcceEEE
Q 022967 147 -VTVLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANGVAL 225 (289)
Q Consensus 147 -~~~~~~~~~~~~~~~~~~l~~~~dG~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~p~gl~~ 225 (289)
...+... ..+.+|.- |.+..... .+.|..||-++++...-.+ ......+.|
T Consensus 101 ~~k~i~~~------~~~~~If~---G~LL~~~~------------------~~~i~~yDw~~~~~i~~i~-v~~vk~V~W 152 (443)
T PF04053_consen 101 VVKSIKLP------FSVEKIFG---GNLLGVKS------------------SDFICFYDWETGKLIRRID-VSAVKYVIW 152 (443)
T ss_dssp TT-----S------S-EEEEE----SSSEEEEE------------------TTEEEEE-TTT--EEEEES-S-E-EEEEE
T ss_pred cceEEcCC------cccceEEc---CcEEEEEC------------------CCCEEEEEhhHcceeeEEe-cCCCcEEEE
Confidence 1111111 01222322 65444332 2468889887665433322 112378899
Q ss_pred ecCCCEEEEEeCCCCeEEEEEec
Q 022967 226 SKDEDYLVVCETFKFRCLKYWLK 248 (289)
Q Consensus 226 ~~d~~~l~v~~~~~~~i~~~~~~ 248 (289)
+++++.+-+.....--|.+|+.+
T Consensus 153 s~~g~~val~t~~~i~il~~~~~ 175 (443)
T PF04053_consen 153 SDDGELVALVTKDSIYILKYNLE 175 (443)
T ss_dssp -TTSSEEEEE-S-SEEEEEE-HH
T ss_pred ECCCCEEEEEeCCeEEEEEecch
Confidence 99998777664433344455544
No 280
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=83.95 E-value=9.1 Score=35.64 Aligned_cols=65 Identities=12% Similarity=-0.064 Sum_probs=49.0
Q ss_pred CcceEEEcc-CCCEEEEecCCeEEEEecCCceEEeeeecCcCccCeEEcCCCcEEEEeCC-CceEEEe
Q 022967 78 GPEDVCVDR-NGVLYTATRDGWIKRLHKNGTWENWKLIGGDTLLGITTTQENEILVCDAD-KGLLKVT 143 (289)
Q Consensus 78 ~p~~l~~d~-~g~l~v~~~~g~i~~~~~~g~~~~~~~~~~~p~~gl~~d~~g~l~v~~~~-~~i~~~~ 143 (289)
.+.+.+..+ +..+.+++.||.|..+|.+-..+......-.|. -++++++|.+++.... ..+..+|
T Consensus 261 ~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~~~ka~~~P~-~iaWHp~gai~~V~s~qGelQ~FD 327 (545)
T PF11768_consen 261 QVICCARSPSEDKLVLGCEDGSIILYDTTRGVTLLAKAEFIPT-LIAWHPDGAIFVVGSEQGELQCFD 327 (545)
T ss_pred cceEEecCcccceEEEEecCCeEEEEEcCCCeeeeeeecccce-EEEEcCCCcEEEEEcCCceEEEEE
Confidence 567788888 446679999999999996555555666566788 9999999987776544 4477777
No 281
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=83.65 E-value=32 Score=30.70 Aligned_cols=39 Identities=28% Similarity=0.360 Sum_probs=22.0
Q ss_pred CEEEEEeCCCCeEEEeeCCCCCc-ceEEEecCCCEEEEEe
Q 022967 198 GKLLKYDPSLNETSILLDSLFFA-NGVALSKDEDYLVVCE 236 (289)
Q Consensus 198 g~i~~~~~~~~~~~~~~~~~~~p-~gl~~~~d~~~l~v~~ 236 (289)
..+++||+.+++...+......+ .+.++...++.||+..
T Consensus 189 ~~v~~YD~~t~~W~~~~~~p~~~~~~~a~v~~~~~iYv~G 228 (376)
T PRK14131 189 KEVLSYDPSTNQWKNAGESPFLGTAGSAVVIKGNKLWLIN 228 (376)
T ss_pred ceEEEEECCCCeeeECCcCCCCCCCcceEEEECCEEEEEe
Confidence 46999999988887664321111 2222222234488764
No 282
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=83.57 E-value=43 Score=32.16 Aligned_cols=113 Identities=11% Similarity=0.051 Sum_probs=59.1
Q ss_pred cCccCeEEcCCCcEEEEeCCCceEEEe-CCC-eEEEEeccCCccccCccceEEcCCCc------EEEeeCCCccCccccc
Q 022967 117 DTLLGITTTQENEILVCDADKGLLKVT-EEG-VTVLASHVNGSRINLADDLIAATDGS------IYFSVASTKFGLHNWG 188 (289)
Q Consensus 117 ~p~~gl~~d~~g~l~v~~~~~~i~~~~-~~g-~~~~~~~~~~~~~~~~~~l~~~~dG~------lyv~~~~~~~~~~~~~ 188 (289)
+.. +.++..||.+++-...+|-..+. +.| .+..+.. +|.+.....++++.|... +-|.|=
T Consensus 134 R~~-~CsWtnDGqylalG~~nGTIsiRNk~gEek~~I~R-pgg~Nspiwsi~~~p~sg~G~~di~aV~DW---------- 201 (1081)
T KOG1538|consen 134 RII-CCSWTNDGQYLALGMFNGTISIRNKNGEEKVKIER-PGGSNSPIWSICWNPSSGEGRNDILAVADW---------- 201 (1081)
T ss_pred eEE-EeeecCCCcEEEEeccCceEEeecCCCCcceEEeC-CCCCCCCceEEEecCCCCCCccceEEEEec----------
Confidence 345 67777788776665556544443 556 4333332 333344556777776421 222221
Q ss_pred cccceecCCCEEEEEeCCCCeEEEeeCCCCCcceEEEecCCCEEEEEeCCCCeEEEEEecCC
Q 022967 189 LDLLEAKPHGKLLKYDPSLNETSILLDSLFFANGVALSKDEDYLVVCETFKFRCLKYWLKGE 250 (289)
Q Consensus 189 ~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~p~gl~~~~d~~~l~v~~~~~~~i~~~~~~~~ 250 (289)
+-.+-.+..++..+..-..-...|.-+..-++|+++.+... ...+..|..+|-
T Consensus 202 --------~qTLSFy~LsG~~Igk~r~L~FdP~CisYf~NGEy~LiGGs-dk~L~~fTR~Gv 254 (1081)
T KOG1538|consen 202 --------GQTLSFYQLSGKQIGKDRALNFDPCCISYFTNGEYILLGGS-DKQLSLFTRDGV 254 (1081)
T ss_pred --------cceeEEEEecceeecccccCCCCchhheeccCCcEEEEccC-CCceEEEeecCe
Confidence 12233333332222211112234666777788998888754 366777776664
No 283
>PHA03098 kelch-like protein; Provisional
Probab=83.31 E-value=40 Score=31.60 Aligned_cols=145 Identities=15% Similarity=0.061 Sum_probs=70.7
Q ss_pred CCCEEE-EecC------CeEEEEe-cCCceEEeeeec-Cc-CccCeEEcCCCcEEEEeCC------CceEEEe-CCC-eE
Q 022967 87 NGVLYT-ATRD------GWIKRLH-KNGTWENWKLIG-GD-TLLGITTTQENEILVCDAD------KGLLKVT-EEG-VT 148 (289)
Q Consensus 87 ~g~l~v-~~~~------g~i~~~~-~~g~~~~~~~~~-~~-p~~gl~~d~~g~l~v~~~~------~~i~~~~-~~g-~~ 148 (289)
++.||+ |..+ ..+++++ .+.++....... .+ -. +++. -+|.||+.... ..+.+++ .++ .+
T Consensus 294 ~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~-~~~~-~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~ 371 (534)
T PHA03098 294 NNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNP-GVTV-FNNRIYVIGGIYNSISLNTVESWKPGESKWR 371 (534)
T ss_pred CCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccc-eEEE-ECCEEEEEeCCCCCEecceEEEEcCCCCcee
Confidence 567884 3211 2467777 345554432211 11 12 3443 35789987432 2366777 444 44
Q ss_pred EEEeccCCccccCccceEEcCCCcEEEeeCCCccCccccccccceecCCCEEEEEeCCCCeEEEeeCCCCCc-ceE-EEe
Q 022967 149 VLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFA-NGV-ALS 226 (289)
Q Consensus 149 ~~~~~~~~~~~~~~~~l~~~~dG~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~p-~gl-~~~ 226 (289)
.... .+... .... ++.-+|+||+..+.... ......+++||+.+++++....- ..+ .+. +..
T Consensus 372 ~~~~-lp~~r--~~~~-~~~~~~~iYv~GG~~~~-----------~~~~~~v~~yd~~t~~W~~~~~~-p~~r~~~~~~~ 435 (534)
T PHA03098 372 EEPP-LIFPR--YNPC-VVNVNNLIYVIGGISKN-----------DELLKTVECFSLNTNKWSKGSPL-PISHYGGCAIY 435 (534)
T ss_pred eCCC-cCcCC--ccce-EEEECCEEEEECCcCCC-----------CcccceEEEEeCCCCeeeecCCC-CccccCceEEE
Confidence 3321 11111 1112 23347899997542110 01135689999998887765421 111 111 222
Q ss_pred cCCCEEEEEeCC--------CCeEEEEEecCC
Q 022967 227 KDEDYLVVCETF--------KFRCLKYWLKGE 250 (289)
Q Consensus 227 ~d~~~l~v~~~~--------~~~i~~~~~~~~ 250 (289)
.+ +.+|+.... ...+++||....
T Consensus 436 ~~-~~iyv~GG~~~~~~~~~~~~v~~yd~~~~ 466 (534)
T PHA03098 436 HD-GKIYVIGGISYIDNIKVYNIVESYNPVTN 466 (534)
T ss_pred EC-CEEEEECCccCCCCCcccceEEEecCCCC
Confidence 23 458886421 124888887654
No 284
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=83.04 E-value=35 Score=30.71 Aligned_cols=146 Identities=10% Similarity=-0.020 Sum_probs=78.7
Q ss_pred EEEcc--CCCEEEEecCCeEEEEecCC--c----e---EEeeeecCcCccCeEEcCC-CcEEEEeCC-CceEEEe-CCC-
Q 022967 82 VCVDR--NGVLYTATRDGWIKRLHKNG--T----W---ENWKLIGGDTLLGITTTQE-NEILVCDAD-KGLLKVT-EEG- 146 (289)
Q Consensus 82 l~~d~--~g~l~v~~~~g~i~~~~~~g--~----~---~~~~~~~~~p~~gl~~d~~-g~l~v~~~~-~~i~~~~-~~g- 146 (289)
|...+ .|.|..+..++.|..++.+. . . ..+........ .+++... ..||.+..+ ..+...| ..+
T Consensus 183 lsWn~~~~g~Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~Ve-DV~~h~~h~~lF~sv~dd~~L~iwD~R~~~ 261 (422)
T KOG0264|consen 183 LSWNRQQEGTLLSGSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVE-DVAWHPLHEDLFGSVGDDGKLMIWDTRSNT 261 (422)
T ss_pred cccccccceeEeeccCCCcEEEEeccccccCCccccceEEeecCCccee-hhhccccchhhheeecCCCeEEEEEcCCCC
Confidence 44444 46677677788888888221 1 1 11111222233 5666532 345554333 4455555 222
Q ss_pred --eEEEEeccCCccccCccceEEcCCCcEEEeeCCCccCccccccccceecCCCEEEEEeCCCCe--EEEeeCCCCCcce
Q 022967 147 --VTVLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNE--TSILLDSLFFANG 222 (289)
Q Consensus 147 --~~~~~~~~~~~~~~~~~~l~~~~dG~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~--~~~~~~~~~~p~g 222 (289)
......... .-.+.+++.|-+...++.++ ..+.|..+|.+.-. +-.+...-..-..
T Consensus 262 ~~~~~~~~ah~----~~vn~~~fnp~~~~ilAT~S----------------~D~tV~LwDlRnL~~~lh~~e~H~dev~~ 321 (422)
T KOG0264|consen 262 SKPSHSVKAHS----AEVNCVAFNPFNEFILATGS----------------ADKTVALWDLRNLNKPLHTFEGHEDEVFQ 321 (422)
T ss_pred CCCcccccccC----CceeEEEeCCCCCceEEecc----------------CCCcEEEeechhcccCceeccCCCcceEE
Confidence 111111111 13567888885544444433 24667777765321 2222222333456
Q ss_pred EEEecCCCEEEEEeCCCCeEEEEEec
Q 022967 223 VALSKDEDYLVVCETFKFRCLKYWLK 248 (289)
Q Consensus 223 l~~~~d~~~l~v~~~~~~~i~~~~~~ 248 (289)
+.|+|..+.+..+....+++.+||+.
T Consensus 322 V~WSPh~etvLASSg~D~rl~vWDls 347 (422)
T KOG0264|consen 322 VEWSPHNETVLASSGTDRRLNVWDLS 347 (422)
T ss_pred EEeCCCCCceeEecccCCcEEEEecc
Confidence 88999999898888788999999985
No 285
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=83.01 E-value=32 Score=30.29 Aligned_cols=70 Identities=7% Similarity=-0.044 Sum_probs=39.5
Q ss_pred CCcceEEEccCCCEE-EEecCCeEEEEe-cCCceEEeeeecCcCccCeEEcCCCcEEE-EeCCCceEEEe-CCC
Q 022967 77 NGPEDVCVDRNGVLY-TATRDGWIKRLH-KNGTWENWKLIGGDTLLGITTTQENEILV-CDADKGLLKVT-EEG 146 (289)
Q Consensus 77 ~~p~~l~~d~~g~l~-v~~~~g~i~~~~-~~g~~~~~~~~~~~p~~gl~~d~~g~l~v-~~~~~~i~~~~-~~g 146 (289)
..-+.+...|.+.++ +++.+|.++.|. +++...+...+.+.+.+.=.|-++|+..+ ......|..++ +.|
T Consensus 149 ~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg 222 (399)
T KOG0296|consen 149 EDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQALCKVMSGHNSPCTCGEFIPDGKRILTGYDDGTIIVWNPKTG 222 (399)
T ss_pred CceEEEEecccccEEEeecCCCcEEEEECCCcceeeEecCCCCCcccccccCCCceEEEEecCceEEEEecCCC
Confidence 344556777777766 777899999998 45433333332233322222336775444 44334466677 667
No 286
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=82.52 E-value=54 Score=32.49 Aligned_cols=59 Identities=17% Similarity=0.153 Sum_probs=37.3
Q ss_pred CCCEEEEecCCeEEEEe-cCCceEEeeeecC---------cCccCeEEc-----------------CCCcEEEEeCCCce
Q 022967 87 NGVLYTATRDGWIKRLH-KNGTWENWKLIGG---------DTLLGITTT-----------------QENEILVCDADKGL 139 (289)
Q Consensus 87 ~g~l~v~~~~g~i~~~~-~~g~~~~~~~~~~---------~p~~gl~~d-----------------~~g~l~v~~~~~~i 139 (289)
+|.||+.+.++.|+.+| .+|+...-..... ... |+++. .+++||+...+.++
T Consensus 194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cR-Gvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~L 272 (764)
T TIGR03074 194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCR-GVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARL 272 (764)
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCccccccccccc-ceEEecCCcccccccccccccccCCEEEEecCCCeE
Confidence 68999999889999999 5676432111100 011 33221 23478888776778
Q ss_pred EEEe-CCC
Q 022967 140 LKVT-EEG 146 (289)
Q Consensus 140 ~~~~-~~g 146 (289)
+.+| ++|
T Consensus 273 iALDA~TG 280 (764)
T TIGR03074 273 IALDADTG 280 (764)
T ss_pred EEEECCCC
Confidence 9999 677
No 287
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=82.18 E-value=29 Score=30.81 Aligned_cols=108 Identities=12% Similarity=0.003 Sum_probs=60.5
Q ss_pred CeEEcCC--CcEEE-EeCCCceEEEe-CCCeEEEEe-ccCCccccCccceEEcCCCc-EEEeeCCCccCcccccccccee
Q 022967 121 GITTTQE--NEILV-CDADKGLLKVT-EEGVTVLAS-HVNGSRINLADDLIAATDGS-IYFSVASTKFGLHNWGLDLLEA 194 (289)
Q Consensus 121 gl~~d~~--g~l~v-~~~~~~i~~~~-~~g~~~~~~-~~~~~~~~~~~~l~~~~dG~-lyv~~~~~~~~~~~~~~~~~~~ 194 (289)
++.|-+. ..-++ +...+.+..|| ..+.+++.. ... -+....+...|+|+ ||+++..
T Consensus 207 di~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~---E~~is~~~l~p~gn~Iy~gn~~--------------- 268 (412)
T KOG3881|consen 207 DIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFL---ENPISSTGLTPSGNFIYTGNTK--------------- 268 (412)
T ss_pred cceecCCCCCceEEEEecceeEEEecCcccCcceeEeccc---cCcceeeeecCCCcEEEEeccc---------------
Confidence 4555432 23333 34445566677 334222221 111 13456778889985 7888754
Q ss_pred cCCCEEEEEeCCCCeEEEe-eCCC-CCcceEEEecCCCEEEEEeCCCCeEEEEEecCC
Q 022967 195 KPHGKLLKYDPSLNETSIL-LDSL-FFANGVALSKDEDYLVVCETFKFRCLKYWLKGE 250 (289)
Q Consensus 195 ~~~g~i~~~~~~~~~~~~~-~~~~-~~p~gl~~~~d~~~l~v~~~~~~~i~~~~~~~~ 250 (289)
+.|..||..++..... ..+. ..+.+|..+|... +..+..-.+-|++||.+..
T Consensus 269 ---g~l~~FD~r~~kl~g~~~kg~tGsirsih~hp~~~-~las~GLDRyvRIhD~ktr 322 (412)
T KOG3881|consen 269 ---GQLAKFDLRGGKLLGCGLKGITGSIRSIHCHPTHP-VLASCGLDRYVRIHDIKTR 322 (412)
T ss_pred ---chhheecccCceeeccccCCccCCcceEEEcCCCc-eEEeeccceeEEEeecccc
Confidence 7788899876655432 2332 3467788887766 3333334455777887764
No 288
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=82.10 E-value=26 Score=31.10 Aligned_cols=40 Identities=13% Similarity=0.150 Sum_probs=26.0
Q ss_pred CeEEEeeCCCCCcceEEEecCCCEEEEEeCCCCeEEEEEec
Q 022967 208 NETSILLDSLFFANGVALSKDEDYLVVCETFKFRCLKYWLK 248 (289)
Q Consensus 208 ~~~~~~~~~~~~p~gl~~~~d~~~l~v~~~~~~~i~~~~~~ 248 (289)
+..+.....+..-.-+++++|+++++.+|.. ..|++.+..
T Consensus 142 ~~~~~~lGhvSml~dVavS~D~~~IitaDRD-EkIRvs~yp 181 (390)
T KOG3914|consen 142 GRCEPILGHVSMLLDVAVSPDDQFIITADRD-EKIRVSRYP 181 (390)
T ss_pred cCcchhhhhhhhhheeeecCCCCEEEEecCC-ceEEEEecC
Confidence 3444444555556678999999988888775 445554433
No 289
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=81.50 E-value=35 Score=29.58 Aligned_cols=147 Identities=8% Similarity=0.026 Sum_probs=65.1
Q ss_pred cceEEEccCCCEEEEe-cCCeEEEEe-cCCceEEeeeecCcCccCeEEcCCCcEEEEeCCCce--EEEeCCC-eEEEEec
Q 022967 79 PEDVCVDRNGVLYTAT-RDGWIKRLH-KNGTWENWKLIGGDTLLGITTTQENEILVCDADKGL--LKVTEEG-VTVLASH 153 (289)
Q Consensus 79 p~~l~~d~~g~l~v~~-~~g~i~~~~-~~g~~~~~~~~~~~p~~gl~~d~~g~l~v~~~~~~i--~~~~~~g-~~~~~~~ 153 (289)
-.++++.|.|.|-.+- .++.+..|+ -.|+......-...+. -+.|++.|.-|+....++| |..+... +..+...
T Consensus 130 Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~~L~~~at-~v~w~~~Gd~F~v~~~~~i~i~q~d~A~v~~~i~~~ 208 (362)
T KOG0294|consen 130 VTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFVLNLKNKAT-LVSWSPQGDHFVVSGRNKIDIYQLDNASVFREIENP 208 (362)
T ss_pred cceeEecCCCceEEEEcCCceeeeehhhcCccceeeccCCcce-eeEEcCCCCEEEEEeccEEEEEecccHhHhhhhhcc
Confidence 3445555555555333 333344444 3343322222223344 5777777763333323443 3333111 2211110
Q ss_pred cCCccccCccceEEcCCCcEEEeeCCCccCccccccccceecCCCEEEEEeCCCCeE-EEeeCCCCCcceEE-EecCCCE
Q 022967 154 VNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNET-SILLDSLFFANGVA-LSKDEDY 231 (289)
Q Consensus 154 ~~~~~~~~~~~l~~~~dG~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~-~~~~~~~~~p~gl~-~~~d~~~ 231 (289)
..+..+.+...+.+.++-. ++.|...|.+.+.. ..+...-....++. +.....+
T Consensus 209 ------~r~l~~~~l~~~~L~vG~d------------------~~~i~~~D~ds~~~~~~~~AH~~RVK~i~~~~~~~~~ 264 (362)
T KOG0294|consen 209 ------KRILCATFLDGSELLVGGD------------------NEWISLKDTDSDTPLTEFLAHENRVKDIASYTNPEHE 264 (362)
T ss_pred ------ccceeeeecCCceEEEecC------------------CceEEEeccCCCccceeeecchhheeeeEEEecCCce
Confidence 1233444554555655532 35566677654221 11111112223444 2322335
Q ss_pred EEEEeCCCCeEEEEEecCC
Q 022967 232 LVVCETFKFRCLKYWLKGE 250 (289)
Q Consensus 232 l~v~~~~~~~i~~~~~~~~ 250 (289)
++++-+..+.|.+||++-.
T Consensus 265 ~lvTaSSDG~I~vWd~~~~ 283 (362)
T KOG0294|consen 265 YLVTASSDGFIKVWDIDME 283 (362)
T ss_pred EEEEeccCceEEEEEcccc
Confidence 7777777788888887643
No 290
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=81.36 E-value=18 Score=33.80 Aligned_cols=45 Identities=7% Similarity=0.154 Sum_probs=27.3
Q ss_pred EeCCCCeEEEeeCCCCCcceEEEecCCCEEEEEeCCCCeEEEEEec
Q 022967 203 YDPSLNETSILLDSLFFANGVALSKDEDYLVVCETFKFRCLKYWLK 248 (289)
Q Consensus 203 ~~~~~~~~~~~~~~~~~p~gl~~~~d~~~l~v~~~~~~~i~~~~~~ 248 (289)
+|+.+|+.-...+....-|-+++-|+++.++.+.. +..+-.|.+.
T Consensus 299 Wd~~~Gk~~asiEpt~~lND~C~~p~sGm~f~Ane-~~~m~~yyiP 343 (703)
T KOG2321|consen 299 WDECTGKPMASIEPTSDLNDFCFVPGSGMFFTANE-SSKMHTYYIP 343 (703)
T ss_pred cccccCCceeeccccCCcCceeeecCCceEEEecC-CCcceeEEcc
Confidence 45555665444444455677888898886666643 4555555543
No 291
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=81.05 E-value=40 Score=30.00 Aligned_cols=147 Identities=14% Similarity=0.167 Sum_probs=78.6
Q ss_pred cceEEEccCCCEE-EEecCCeEEEEe--cCCc-eEEe--eeecCcCccCeEEcCCC-cEEEEeCCCceEEEe-C--C-C-
Q 022967 79 PEDVCVDRNGVLY-TATRDGWIKRLH--KNGT-WENW--KLIGGDTLLGITTTQEN-EILVCDADKGLLKVT-E--E-G- 146 (289)
Q Consensus 79 p~~l~~d~~g~l~-v~~~~g~i~~~~--~~g~-~~~~--~~~~~~p~~gl~~d~~g-~l~v~~~~~~i~~~~-~--~-g- 146 (289)
+..+...++|+|. +++...+.+.++ .+-+ ...+ .....++. .+.+..+. .+.|++...-++.++ - + +
T Consensus 65 ~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v~~~~~-ai~~~~~~~sv~v~dkagD~~~~di~s~~~~~ 143 (390)
T KOG3914|consen 65 PALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCVPKRPT-AISFIREDTSVLVADKAGDVYSFDILSADSGR 143 (390)
T ss_pred ccccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEeecccCcc-eeeeeeccceEEEEeecCCceeeeeecccccC
Confidence 4444555567765 666655554554 2222 1111 12234566 77766443 466777555566665 1 1 3
Q ss_pred eEEEEeccCCccccCccceEEcCCCcEEEeeCCCccCccccccccceecCCCEEEEEeCCCCeEEEeeC-CCCCcceEEE
Q 022967 147 VTVLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLD-SLFFANGVAL 225 (289)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~l~~~~dG~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~-~~~~p~gl~~ 225 (289)
-+.+.. -.....++++.+|+.+.++... ...-+|.+|. ....++.+.- .-.+-.++++
T Consensus 144 ~~~~lG-----hvSml~dVavS~D~~~IitaDR---------------DEkIRvs~yp-a~f~IesfclGH~eFVS~isl 202 (390)
T KOG3914|consen 144 CEPILG-----HVSMLLDVAVSPDDQFIITADR---------------DEKIRVSRYP-ATFVIESFCLGHKEFVSTISL 202 (390)
T ss_pred cchhhh-----hhhhhheeeecCCCCEEEEecC---------------CceEEEEecC-cccchhhhccccHhheeeeee
Confidence 222211 1235679999999876665432 0123455553 2233333322 2345566776
Q ss_pred ecCCCEEEEEeCCCCeEEEEEecC
Q 022967 226 SKDEDYLVVCETFKFRCLKYWLKG 249 (289)
Q Consensus 226 ~~d~~~l~v~~~~~~~i~~~~~~~ 249 (289)
.++ ++.++..+.+.|+.||...
T Consensus 203 ~~~--~~LlS~sGD~tlr~Wd~~s 224 (390)
T KOG3914|consen 203 TDN--YLLLSGSGDKTLRLWDITS 224 (390)
T ss_pred ccC--ceeeecCCCCcEEEEeccc
Confidence 643 3677778899999999864
No 292
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=80.85 E-value=36 Score=29.33 Aligned_cols=72 Identities=15% Similarity=0.189 Sum_probs=44.7
Q ss_pred cceEEEcc-CCCEE-EEecCCeEEEEe--cCCceEEee--eecCcCccCeEEcCCCc-EEEEeCCCceEEEe-CCC-eEE
Q 022967 79 PEDVCVDR-NGVLY-TATRDGWIKRLH--KNGTWENWK--LIGGDTLLGITTTQENE-ILVCDADKGLLKVT-EEG-VTV 149 (289)
Q Consensus 79 p~~l~~d~-~g~l~-v~~~~g~i~~~~--~~g~~~~~~--~~~~~p~~gl~~d~~g~-l~v~~~~~~i~~~~-~~g-~~~ 149 (289)
-..|++.| ...+. .++.+|.|..|+ .+|...-.. ...+-++ .+.+..||. +|.+..+..+-.+| .+| ...
T Consensus 30 IS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL-~v~WsddgskVf~g~~Dk~~k~wDL~S~Q~~~ 108 (347)
T KOG0647|consen 30 ISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVL-DVCWSDDGSKVFSGGCDKQAKLWDLASGQVSQ 108 (347)
T ss_pred hheeEeccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeE-EEEEccCCceEEeeccCCceEEEEccCCCeee
Confidence 34467777 55666 667889888887 345433211 2223445 888888885 66666656677777 666 555
Q ss_pred EE
Q 022967 150 LA 151 (289)
Q Consensus 150 ~~ 151 (289)
+.
T Consensus 109 v~ 110 (347)
T KOG0647|consen 109 VA 110 (347)
T ss_pred ee
Confidence 43
No 293
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=80.70 E-value=35 Score=29.32 Aligned_cols=101 Identities=12% Similarity=0.065 Sum_probs=50.2
Q ss_pred CeEEcCC-CcEEEEeCCCceEEEe-C-CCeE-EEEeccCCccccCccceEEcCCCcEEEeeCCCccCccccccccceecC
Q 022967 121 GITTTQE-NEILVCDADKGLLKVT-E-EGVT-VLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKP 196 (289)
Q Consensus 121 gl~~d~~-g~l~v~~~~~~i~~~~-~-~g~~-~~~~~~~~~~~~~~~~l~~~~dG~lyv~~~~~~~~~~~~~~~~~~~~~ 196 (289)
.+.|++. +.|.++.....+..++ + +... .+... ....+.++.++-.+|++.-
T Consensus 18 ~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~~~~~~------~plL~c~F~d~~~~~~G~~------------------ 73 (323)
T KOG1036|consen 18 SVKFSPSSSDLLVSSWDGSLRLYDVPANSLKLKFKHG------APLLDCAFADESTIVTGGL------------------ 73 (323)
T ss_pred eEEEcCcCCcEEEEeccCcEEEEeccchhhhhheecC------CceeeeeccCCceEEEecc------------------
Confidence 5667643 4677777655455555 2 2221 11111 1233566767777777653
Q ss_pred CCEEEEEeCCCCeEEEeeCCCCCcceEEEecCCCEEEEEeCCCCeEEEEE
Q 022967 197 HGKLLKYDPSLNETSILLDSLFFANGVALSKDEDYLVVCETFKFRCLKYW 246 (289)
Q Consensus 197 ~g~i~~~~~~~~~~~~~~~~~~~p~gl~~~~d~~~l~v~~~~~~~i~~~~ 246 (289)
.|.|.++|..++....+..+......|...+..+ ..|+....++|..||
T Consensus 74 dg~vr~~Dln~~~~~~igth~~~i~ci~~~~~~~-~vIsgsWD~~ik~wD 122 (323)
T KOG1036|consen 74 DGQVRRYDLNTGNEDQIGTHDEGIRCIEYSYEVG-CVISGSWDKTIKFWD 122 (323)
T ss_pred CceEEEEEecCCcceeeccCCCceEEEEeeccCC-eEEEcccCccEEEEe
Confidence 3667777776665544433333333444443222 344444444444444
No 294
>PHA02790 Kelch-like protein; Provisional
Probab=80.67 E-value=48 Score=30.75 Aligned_cols=136 Identities=13% Similarity=0.070 Sum_probs=66.3
Q ss_pred CCCEEE-Eec--CCeEEEEec-CCceEEeeeec-CcCccCeEEcCCCcEEEEeCC----CceEEEe-CCC-eEEEEeccC
Q 022967 87 NGVLYT-ATR--DGWIKRLHK-NGTWENWKLIG-GDTLLGITTTQENEILVCDAD----KGLLKVT-EEG-VTVLASHVN 155 (289)
Q Consensus 87 ~g~l~v-~~~--~g~i~~~~~-~g~~~~~~~~~-~~p~~gl~~d~~g~l~v~~~~----~~i~~~~-~~g-~~~~~~~~~ 155 (289)
+|.||+ |.. ...+.++++ .+++.....-. .+...+.+. -+|.||+.... ..+.++| ..+ .+.... ..
T Consensus 318 ~~~iYviGG~~~~~sve~ydp~~n~W~~~~~l~~~r~~~~~~~-~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~-m~ 395 (480)
T PHA02790 318 NNKLYVVGGLPNPTSVERWFHGDAAWVNMPSLLKPRCNPAVAS-INNVIYVIGGHSETDTTTEYLLPNHDQWQFGPS-TY 395 (480)
T ss_pred CCEEEEECCcCCCCceEEEECCCCeEEECCCCCCCCcccEEEE-ECCEEEEecCcCCCCccEEEEeCCCCEEEeCCC-CC
Confidence 678884 322 234667763 34444332211 111102333 36899997421 2356677 334 443321 11
Q ss_pred CccccCccceEEcCCCcEEEeeCCCccCccccccccceecCCCEEEEEeCCCCeEEEeeCCC--CCcceEEEecCCCEEE
Q 022967 156 GSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSL--FFANGVALSKDEDYLV 233 (289)
Q Consensus 156 ~~~~~~~~~l~~~~dG~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~--~~p~gl~~~~d~~~l~ 233 (289)
.......++.-+|.||+.- |.+.+||+++++++.+..-. +.-.+++.- +++ +|
T Consensus 396 ---~~r~~~~~~~~~~~IYv~G--------------------G~~e~ydp~~~~W~~~~~m~~~r~~~~~~v~-~~~-IY 450 (480)
T PHA02790 396 ---YPHYKSCALVFGRRLFLVG--------------------RNAEFYCESSNTWTLIDDPIYPRDNPELIIV-DNK-LL 450 (480)
T ss_pred ---CccccceEEEECCEEEEEC--------------------CceEEecCCCCcEeEcCCCCCCccccEEEEE-CCE-EE
Confidence 1111122334578999973 34677899988887764321 122344433 344 88
Q ss_pred EEeCC-----CCeEEEEEecC
Q 022967 234 VCETF-----KFRCLKYWLKG 249 (289)
Q Consensus 234 v~~~~-----~~~i~~~~~~~ 249 (289)
+.-.. ...+.+||+..
T Consensus 451 viGG~~~~~~~~~ve~Yd~~~ 471 (480)
T PHA02790 451 LIGGFYRGSYIDTIEVYNNRT 471 (480)
T ss_pred EECCcCCCcccceEEEEECCC
Confidence 87321 13455666543
No 295
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=79.74 E-value=15 Score=35.35 Aligned_cols=65 Identities=23% Similarity=0.268 Sum_probs=40.4
Q ss_pred ceEEEccC-CCEEEEecCCeEEEEe-cCCceEEeee----ecCcCccCeEEcCCCcEEEEeC--CCceEEEe-CCC
Q 022967 80 EDVCVDRN-GVLYTATRDGWIKRLH-KNGTWENWKL----IGGDTLLGITTTQENEILVCDA--DKGLLKVT-EEG 146 (289)
Q Consensus 80 ~~l~~d~~-g~l~v~~~~g~i~~~~-~~g~~~~~~~----~~~~p~~gl~~d~~g~l~v~~~--~~~i~~~~-~~g 146 (289)
.+|++||. +.+.++..+..|..++ .+|+..+.-+ ..+.++ -+..|+.| +|++.. +..+..+| -.|
T Consensus 600 YDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG~lI-Kv~lDPSg-iY~atScsdktl~~~Df~sg 673 (1080)
T KOG1408|consen 600 YDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDHEGDLI-KVILDPSG-IYLATSCSDKTLCFVDFVSG 673 (1080)
T ss_pred EEeeeCCCcceEEEEecccceEEEeccccceeeeecccccCCCceE-EEEECCCc-cEEEEeecCCceEEEEeccc
Confidence 45788884 4445666777788888 5676444322 235566 78888887 565542 25577777 445
No 296
>PRK13616 lipoprotein LpqB; Provisional
Probab=78.29 E-value=65 Score=30.87 Aligned_cols=110 Identities=13% Similarity=0.070 Sum_probs=54.8
Q ss_pred cCccCeEEcCCCc-EEEEeCCCceEE---Ee-CCC-eEEEEeccCCcccc-CccceEEcCCCcEEEeeCCCccCcccccc
Q 022967 117 DTLLGITTTQENE-ILVCDADKGLLK---VT-EEG-VTVLASHVNGSRIN-LADDLIAATDGSIYFSVASTKFGLHNWGL 189 (289)
Q Consensus 117 ~p~~gl~~d~~g~-l~v~~~~~~i~~---~~-~~g-~~~~~~~~~~~~~~-~~~~l~~~~dG~lyv~~~~~~~~~~~~~~ 189 (289)
... .+.+.+||. +.+... ..++. .. .+| .+.-....-...+. .+.++.+..++.|++....
T Consensus 449 ~Is-sl~wSpDG~RiA~i~~-g~v~Va~Vvr~~~G~~~l~~~~~l~~~l~~~~~~l~W~~~~~L~V~~~~---------- 516 (591)
T PRK13616 449 PIS-ELQLSRDGVRAAMIIG-GKVYLAVVEQTEDGQYALTNPREVGPGLGDTAVSLDWRTGDSLVVGRSD---------- 516 (591)
T ss_pred CcC-eEEECCCCCEEEEEEC-CEEEEEEEEeCCCCceeecccEEeecccCCccccceEecCCEEEEEecC----------
Confidence 344 888988985 444332 34444 22 344 33210000001111 2457888889988876432
Q ss_pred ccceecCCCEEEEEeCCCCeEEEeeCCCCCcceEEEecCCCEEEEEeCCCCeEEEEE
Q 022967 190 DLLEAKPHGKLLKYDPSLNETSILLDSLFFANGVALSKDEDYLVVCETFKFRCLKYW 246 (289)
Q Consensus 190 ~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~p~gl~~~~d~~~l~v~~~~~~~i~~~~ 246 (289)
....++++..++...+.+..+...+...++......+|+++. +.+..+.
T Consensus 517 ------~~~~v~~v~vDG~~~~~~~~~n~~~~v~~vaa~~~~iyv~~~--~g~~~l~ 565 (591)
T PRK13616 517 ------PEHPVWYVNLDGSNSDALPSRNLSAPVVAVAASPSTVYVTDA--RAVLQLP 565 (591)
T ss_pred ------CCCceEEEecCCccccccCCCCccCceEEEecCCceEEEEcC--CceEEec
Confidence 224588888885443332222112222344433456999865 4455554
No 297
>smart00564 PQQ beta-propeller repeat. Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.
Probab=78.10 E-value=4.9 Score=21.44 Aligned_cols=23 Identities=30% Similarity=0.553 Sum_probs=17.0
Q ss_pred CCCEEEEecCCeEEEEe-cCCceE
Q 022967 87 NGVLYTATRDGWIKRLH-KNGTWE 109 (289)
Q Consensus 87 ~g~l~v~~~~g~i~~~~-~~g~~~ 109 (289)
+|.+|+++.+|.++.++ .+|+..
T Consensus 6 ~~~v~~~~~~g~l~a~d~~~G~~~ 29 (33)
T smart00564 6 DGTVYVGSTDGTLYALDAKTGEIL 29 (33)
T ss_pred CCEEEEEcCCCEEEEEEcccCcEE
Confidence 56788888888888888 466543
No 298
>COG4247 Phy 3-phytase (myo-inositol-hexaphosphate 3-phosphohydrolase) [Lipid metabolism]
Probab=77.71 E-value=42 Score=28.32 Aligned_cols=88 Identities=20% Similarity=0.169 Sum_probs=49.0
Q ss_pred EEEEEeCCCCeEEEeeC-------CCCCcceEEEecCCC--EEEE-EeCCCCeEEEEEecCC---CCcceeeeeccCCCC
Q 022967 199 KLLKYDPSLNETSILLD-------SLFFANGVALSKDED--YLVV-CETFKFRCLKYWLKGE---SKEQTEIFVENLPGG 265 (289)
Q Consensus 199 ~i~~~~~~~~~~~~~~~-------~~~~p~gl~~~~d~~--~l~v-~~~~~~~i~~~~~~~~---~~~~~~~~~~~~~~~ 265 (289)
.+|.+||+.+.++.+.+ +...+.|+++..+.+ -.|+ .....+.+..|.+... +.....+..-.++..
T Consensus 127 ~~y~Idp~~~~L~sitD~n~p~ss~~s~~YGl~lyrs~ktgd~yvfV~~~qG~~~Qy~l~d~gnGkv~~k~vR~fk~~tQ 206 (364)
T COG4247 127 VFYKIDPNPQYLESITDSNAPYSSSSSSAYGLALYRSPKTGDYYVFVNRRQGDIAQYKLIDQGNGKVGTKLVRQFKIPTQ 206 (364)
T ss_pred EEEEeCCCccceeeccCCCCccccCcccceeeEEEecCCcCcEEEEEecCCCceeEEEEEecCCceEcceeeEeeecCCc
Confidence 46778887766665533 456678888866433 2333 2234466777776421 222222211133445
Q ss_pred CCceeeC-CCCCEEEEEeCccc
Q 022967 266 PDNIKLA-PDGSFWIAILQVFI 286 (289)
Q Consensus 266 p~~i~~d-~~G~lwv~~~~g~i 286 (289)
..|+..| +-|.+||+-...+|
T Consensus 207 TEG~VaDdEtG~LYIaeEdvai 228 (364)
T COG4247 207 TEGMVADDETGFLYIAEEDVAI 228 (364)
T ss_pred ccceeeccccceEEEeecccee
Confidence 5665555 55899999766543
No 299
>PHA03098 kelch-like protein; Provisional
Probab=77.53 E-value=63 Score=30.29 Aligned_cols=147 Identities=14% Similarity=0.054 Sum_probs=71.4
Q ss_pred CCCEEE-EecC-----CeEEEEe-cCCceEEeeeec-Cc-CccCeEEcCCCcEEEEeCC-------CceEEEe-CCC-eE
Q 022967 87 NGVLYT-ATRD-----GWIKRLH-KNGTWENWKLIG-GD-TLLGITTTQENEILVCDAD-------KGLLKVT-EEG-VT 148 (289)
Q Consensus 87 ~g~l~v-~~~~-----g~i~~~~-~~g~~~~~~~~~-~~-p~~gl~~d~~g~l~v~~~~-------~~i~~~~-~~g-~~ 148 (289)
+|.||+ |..+ ..+.+++ .+++++...... .+ .. +.+. -+|.+|+.... +.+.++| .++ .+
T Consensus 342 ~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~lp~~r~~~-~~~~-~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~ 419 (534)
T PHA03098 342 NNRIYVIGGIYNSISLNTVESWKPGESKWREEPPLIFPRYNP-CVVN-VNNLIYVIGGISKNDELLKTVECFSLNTNKWS 419 (534)
T ss_pred CCEEEEEeCCCCCEecceEEEEcCCCCceeeCCCcCcCCccc-eEEE-ECCEEEEECCcCCCCcccceEEEEeCCCCeee
Confidence 578884 4322 3466676 344554432211 11 12 3333 36789987421 2367888 445 54
Q ss_pred EEEeccCCccccCccceEEcCCCcEEEeeCCCccCccccccccceecCCCEEEEEeCCCCeEEEeeCCC--CCcceEEEe
Q 022967 149 VLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSL--FFANGVALS 226 (289)
Q Consensus 149 ~~~~~~~~~~~~~~~~l~~~~dG~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~--~~p~gl~~~ 226 (289)
.+.. .+... . ..-++.-++.||+..+..... .......+++||+.+++++.+..-. +.-.+++.
T Consensus 420 ~~~~-~p~~r--~-~~~~~~~~~~iyv~GG~~~~~---------~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~- 485 (534)
T PHA03098 420 KGSP-LPISH--Y-GGCAIYHDGKIYVIGGISYID---------NIKVYNIVESYNPVTNKWTELSSLNFPRINASLCI- 485 (534)
T ss_pred ecCC-CCccc--c-CceEEEECCEEEEECCccCCC---------CCcccceEEEecCCCCceeeCCCCCcccccceEEE-
Confidence 4322 11111 1 112333477899875431000 0001234899999988887664211 11122222
Q ss_pred cCCCEEEEEeCC-----CCeEEEEEecCC
Q 022967 227 KDEDYLVVCETF-----KFRCLKYWLKGE 250 (289)
Q Consensus 227 ~d~~~l~v~~~~-----~~~i~~~~~~~~ 250 (289)
-++ .+|+.... .+.+++||++.+
T Consensus 486 ~~~-~iyv~GG~~~~~~~~~v~~yd~~~~ 513 (534)
T PHA03098 486 FNN-KIYVVGGDKYEYYINEIEVYDDKTN 513 (534)
T ss_pred ECC-EEEEEcCCcCCcccceeEEEeCCCC
Confidence 244 47776432 246888887654
No 300
>TIGR02608 delta_60_rpt delta-60 repeat domain. This domain occurs in tandem repeats, as many as 13, in proteins from Bdellovibrio bacteriovorus, Azotobacter vinelandii, Geobacter sulfurreducens, Pirellula sp. 1, Myxococcus xanthus, and others, many of which are Deltaproteobacteria. The periodicity of the repeat ranges from about 57 to 61 amino acids, and a core region of about 54 is represented by this model and seed alignment.
Probab=76.76 E-value=8.9 Score=23.88 Aligned_cols=35 Identities=14% Similarity=0.120 Sum_probs=22.7
Q ss_pred ccceEEcCCCcEEEeeCCCccCccccccccceecCCCEEEEEeCC
Q 022967 162 ADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPS 206 (289)
Q Consensus 162 ~~~l~~~~dG~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~ 206 (289)
.+++++.+||+|+++-..... .......|.|++++
T Consensus 3 ~~~~~~q~DGkIlv~G~~~~~----------~~~~~~~l~Rln~D 37 (55)
T TIGR02608 3 AYAVAVQSDGKILVAGYVDNS----------SGNNDFVLARLNAD 37 (55)
T ss_pred eEEEEECCCCcEEEEEEeecC----------CCcccEEEEEECCC
Confidence 457899999999887543110 01123468899987
No 301
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=76.40 E-value=28 Score=31.09 Aligned_cols=96 Identities=16% Similarity=0.159 Sum_probs=55.6
Q ss_pred cCccCeEEcCCCcEEEEeCCCce-EEEeCC-C-e------------EEEEeccCCccccCccceEEcCCCcEEEeeCCCc
Q 022967 117 DTLLGITTTQENEILVCDADKGL-LKVTEE-G-V------------TVLASHVNGSRINLADDLIAATDGSIYFSVASTK 181 (289)
Q Consensus 117 ~p~~gl~~d~~g~l~v~~~~~~i-~~~~~~-g-~------------~~~~~~~~~~~~~~~~~l~~~~dG~lyv~~~~~~ 181 (289)
..+ .+.|+++|++..+..+.+. +.+-.. - + ..++...-..-..-+.++++.+|++..++...
T Consensus 67 aVN-~vRf~p~gelLASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~-- 143 (434)
T KOG1009|consen 67 AVN-VVRFSPDGELLASGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSV-- 143 (434)
T ss_pred eeE-EEEEcCCcCeeeecCCCceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeeec--
Confidence 355 8999999998887544442 222211 0 0 01111111111134678999999876665322
Q ss_pred cCccccccccceecCCCEEEEEeCCCCeEEEee-CCCCCcceEEEecCCC
Q 022967 182 FGLHNWGLDLLEAKPHGKLLKYDPSLNETSILL-DSLFFANGVALSKDED 230 (289)
Q Consensus 182 ~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~-~~~~~p~gl~~~~d~~ 230 (289)
...++.+|...|...... +.-..++|++|+|-++
T Consensus 144 ---------------dns~~l~Dv~~G~l~~~~~dh~~yvqgvawDpl~q 178 (434)
T KOG1009|consen 144 ---------------DNSVRLWDVHAGQLLAILDDHEHYVQGVAWDPLNQ 178 (434)
T ss_pred ---------------cceEEEEEeccceeEeeccccccccceeecchhhh
Confidence 345667777667665443 4456789999998765
No 302
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=75.74 E-value=53 Score=28.49 Aligned_cols=95 Identities=12% Similarity=0.185 Sum_probs=49.8
Q ss_pred cceEEEccCCCEE-EEecCCeEEEEecCCceEEeee-e-----cCcCccCeEEcCCCcEEEEeCCCceEE-Ee-CCC--e
Q 022967 79 PEDVCVDRNGVLY-TATRDGWIKRLHKNGTWENWKL-I-----GGDTLLGITTTQENEILVCDADKGLLK-VT-EEG--V 147 (289)
Q Consensus 79 p~~l~~d~~g~l~-v~~~~g~i~~~~~~g~~~~~~~-~-----~~~p~~gl~~d~~g~l~v~~~~~~i~~-~~-~~g--~ 147 (289)
-++|.+.|.|... +++....+..+|.+- .+.|.. . .+... .+...+.|+|||+....|-.+ +| -++ +
T Consensus 219 vrsiSfHPsGefllvgTdHp~~rlYdv~T-~QcfvsanPd~qht~ai~-~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv 296 (430)
T KOG0640|consen 219 VRSISFHPSGEFLLVGTDHPTLRLYDVNT-YQCFVSANPDDQHTGAIT-QVRYSSTGSLYVTASKDGAIKLWDGVSNRCV 296 (430)
T ss_pred eeeEeecCCCceEEEecCCCceeEEeccc-eeEeeecCccccccccee-EEEecCCccEEEEeccCCcEEeeccccHHHH
Confidence 4456666766654 555544444554221 111211 0 11223 566778999999987665444 44 222 4
Q ss_pred EEEEeccCCccccCccceEEcCCCcEEEeeC
Q 022967 148 TVLASHVNGSRINLADDLIAATDGSIYFSVA 178 (289)
Q Consensus 148 ~~~~~~~~~~~~~~~~~l~~~~dG~lyv~~~ 178 (289)
+.+.....+ ...-...+..+|+..++.+
T Consensus 297 ~t~~~AH~g---sevcSa~Ftkn~kyiLsSG 324 (430)
T KOG0640|consen 297 RTIGNAHGG---SEVCSAVFTKNGKYILSSG 324 (430)
T ss_pred HHHHhhcCC---ceeeeEEEccCCeEEeecC
Confidence 444332222 1233567888888777654
No 303
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=75.13 E-value=48 Score=27.74 Aligned_cols=70 Identities=10% Similarity=0.052 Sum_probs=41.6
Q ss_pred cCccceEEcC-CCcEEEeeCCCccCccccccccceecCCCEEEEEeCCCCeEEEeeCCCC-CcceEEE-ecCCCEEEEEe
Q 022967 160 NLADDLIAAT-DGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLF-FANGVAL-SKDEDYLVVCE 236 (289)
Q Consensus 160 ~~~~~l~~~~-dG~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~-~p~gl~~-~~d~~~l~v~~ 236 (289)
...|.|-++| ++.|+++.+ .+.+|.+|.++|+++....+.. .-..++. +..+. +.+.
T Consensus 115 PeINam~ldP~enSi~~AgG------------------D~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~~~~q--ilsG 174 (325)
T KOG0649|consen 115 PEINAMWLDPSENSILFAGG------------------DGVIYQVDLEDGRIQREYRGHTDYVHSVVGRNANGQ--ILSG 174 (325)
T ss_pred CccceeEeccCCCcEEEecC------------------CeEEEEEEecCCEEEEEEcCCcceeeeeeecccCcc--eeec
Confidence 3567899997 567777753 4789999999999877654422 2233332 22333 2232
Q ss_pred CCCCeEEEEEecC
Q 022967 237 TFKFRCLKYWLKG 249 (289)
Q Consensus 237 ~~~~~i~~~~~~~ 249 (289)
...+.++.||...
T Consensus 175 ~EDGtvRvWd~kt 187 (325)
T KOG0649|consen 175 AEDGTVRVWDTKT 187 (325)
T ss_pred CCCccEEEEeccc
Confidence 3345666666543
No 304
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=75.03 E-value=72 Score=29.66 Aligned_cols=149 Identities=13% Similarity=0.022 Sum_probs=75.0
Q ss_pred cceEEEccCCCEEE-EecCCeEEEEecCC--ceEEeeeecCcCccCeEEcC-CCcEEEEeCC--CceEEE-e-CCC--eE
Q 022967 79 PEDVCVDRNGVLYT-ATRDGWIKRLHKNG--TWENWKLIGGDTLLGITTTQ-ENEILVCDAD--KGLLKV-T-EEG--VT 148 (289)
Q Consensus 79 p~~l~~d~~g~l~v-~~~~g~i~~~~~~g--~~~~~~~~~~~p~~gl~~d~-~g~l~v~~~~--~~i~~~-~-~~g--~~ 148 (289)
-.++.+.++++..+ +..++.+..++... -...+........ .|++.+ ...|+.+..+ .+.+++ | ..| +.
T Consensus 304 VCgLkws~d~~~lASGgnDN~~~Iwd~~~~~p~~~~~~H~aAVK-A~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~ 382 (484)
T KOG0305|consen 304 VCGLKWSPDGNQLASGGNDNVVFIWDGLSPEPKFTFTEHTAAVK-ALAWCPWQSGLLATGGGSADRCIKFWNTNTGARID 382 (484)
T ss_pred eeeeEECCCCCeeccCCCccceEeccCCCccccEEEeccceeee-EeeeCCCccCceEEcCCCcccEEEEEEcCCCcEec
Confidence 34466666766663 34567777776321 1222333334455 777775 2345544322 344444 3 344 22
Q ss_pred EEEeccCCccccCccceEEcCCCcEEEeeCCCccCccccccccceecCCCEEEEEeCCCCeEEEeeCCCCCcceEEEecC
Q 022967 149 VLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANGVALSKD 228 (289)
Q Consensus 149 ~~~~~~~~~~~~~~~~l~~~~dG~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~p~gl~~~~d 228 (289)
.+. . ...+-.|.+.+..+=.++..+ +.. ..-.||+|..- +....+.......--++++||
T Consensus 383 ~vd---t---gsQVcsL~Wsk~~kEi~sthG----~s~---------n~i~lw~~ps~-~~~~~l~gH~~RVl~la~SPd 442 (484)
T KOG0305|consen 383 SVD---T---GSQVCSLIWSKKYKELLSTHG----YSE---------NQITLWKYPSM-KLVAELLGHTSRVLYLALSPD 442 (484)
T ss_pred ccc---c---CCceeeEEEcCCCCEEEEecC----CCC---------CcEEEEecccc-ceeeeecCCcceeEEEEECCC
Confidence 221 1 134567888887753343322 111 11257777432 233333333333455789999
Q ss_pred CCEEEEEeCCCCeEEEEEecC
Q 022967 229 EDYLVVCETFKFRCLKYWLKG 249 (289)
Q Consensus 229 ~~~l~v~~~~~~~i~~~~~~~ 249 (289)
|..+.++ .....+..|++-+
T Consensus 443 g~~i~t~-a~DETlrfw~~f~ 462 (484)
T KOG0305|consen 443 GETIVTG-AADETLRFWNLFD 462 (484)
T ss_pred CCEEEEe-cccCcEEeccccC
Confidence 9976666 4446666665543
No 305
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=74.30 E-value=21 Score=31.28 Aligned_cols=171 Identities=15% Similarity=0.126 Sum_probs=83.1
Q ss_pred CCcceEEEccCCCEEEEecCCeEEEEecCCc-e-EEeeeecCcCccCeEEcCCCcEEEEeCC-CceEEEe-CCC--eEEE
Q 022967 77 NGPEDVCVDRNGVLYTATRDGWIKRLHKNGT-W-ENWKLIGGDTLLGITTTQENEILVCDAD-KGLLKVT-EEG--VTVL 150 (289)
Q Consensus 77 ~~p~~l~~d~~g~l~v~~~~g~i~~~~~~g~-~-~~~~~~~~~p~~gl~~d~~g~l~v~~~~-~~i~~~~-~~g--~~~~ 150 (289)
.+..++..| |+.+..+..++.|..+|.+.. . ..+....|..+ -+.+| .++.|+... ..+..+| .+| +..+
T Consensus 198 kgVYClQYD-D~kiVSGlrDnTikiWD~n~~~c~~~L~GHtGSVL-CLqyd--~rviisGSSDsTvrvWDv~tge~l~tl 273 (499)
T KOG0281|consen 198 KGVYCLQYD-DEKIVSGLRDNTIKIWDKNSLECLKILTGHTGSVL-CLQYD--ERVIVSGSSDSTVRVWDVNTGEPLNTL 273 (499)
T ss_pred CceEEEEec-chhhhcccccCceEEeccccHHHHHhhhcCCCcEE-eeecc--ceEEEecCCCceEEEEeccCCchhhHH
Confidence 344555555 455666667777777774331 1 11122234444 45554 467776543 4566666 666 4444
Q ss_pred EeccCCccccCccceEEcCCCcEEEeeCCCccCccccccccceecCCCEEEEEeCCCCe-EE-EeeCCCCCcceEEEecC
Q 022967 151 ASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNE-TS-ILLDSLFFANGVALSKD 228 (289)
Q Consensus 151 ~~~~~~~~~~~~~~l~~~~dG~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~-~~-~~~~~~~~p~gl~~~~d 228 (289)
..... ...++.+. +|.+ ++... ..+..+|+.+.-+.. .. ++.......|.+.|+
T Consensus 274 ihHce-----aVLhlrf~-ng~m-vtcSk---------------DrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd-- 329 (499)
T KOG0281|consen 274 IHHCE-----AVLHLRFS-NGYM-VTCSK---------------DRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFD-- 329 (499)
T ss_pred hhhcc-----eeEEEEEe-CCEE-EEecC---------------CceeEEEeccCchHHHHHHHHhhhhhheeeeccc--
Confidence 32211 12234443 3333 22211 112356666533211 11 112233444655664
Q ss_pred CCEEEEEeCCCCeEEEEEecCCCCcceeeeeccCCCCCCceeeCC-CCCEEEEEe
Q 022967 229 EDYLVVCETFKFRCLKYWLKGESKEQTEIFVENLPGGPDNIKLAP-DGSFWIAIL 282 (289)
Q Consensus 229 ~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~-~G~lwv~~~ 282 (289)
.+ ++|+.++.+.|..++.++- .|+..+.+.-+||+.-+ .|++-|+..
T Consensus 330 ~k-yIVsASgDRTikvW~~st~------efvRtl~gHkRGIAClQYr~rlvVSGS 377 (499)
T KOG0281|consen 330 DK-YIVSASGDRTIKVWSTSTC------EFVRTLNGHKRGIACLQYRDRLVVSGS 377 (499)
T ss_pred cc-eEEEecCCceEEEEeccce------eeehhhhcccccceehhccCeEEEecC
Confidence 44 7788888899998886542 23334445566666432 245555443
No 306
>PF11725 AvrE: Pathogenicity factor; InterPro: IPR021085 This family is secreted by Gram-negative Gammaproteobacteria such as Pseudomonas syringae of tomato and Erwinia amylovora (Fire blight bacteria), amongst others. It is an essential pathogenicity factor of approximately 198 kDa. Its injection into the host-plant is dependent upon the bacterial type III or Hrp secretion system []. The family is long and carries a number of predicted functional regions, including an ERMS or endoplasmic reticulum membrane retention signal at both the C- and the N-termini, a leucine-zipper motif from residues 539-560, and a nuclear localisation signal at 1358-1361. This conserved AvrE-family of effectors is among the few that are required for full virulence of many phytopathogenic pseudomonads, erwinias and pantoeas [].
Probab=73.89 E-value=29 Score=36.87 Aligned_cols=139 Identities=17% Similarity=0.198 Sum_probs=65.8
Q ss_pred EEEccCCCEEEEecCCeEEEEecC-CceEEeeeecCcCccCeEEcCCCcEEEEeCCCceEEEeCCC-eEEEEeccCCccc
Q 022967 82 VCVDRNGVLYTATRDGWIKRLHKN-GTWENWKLIGGDTLLGITTTQENEILVCDADKGLLKVTEEG-VTVLASHVNGSRI 159 (289)
Q Consensus 82 l~~d~~g~l~v~~~~g~i~~~~~~-g~~~~~~~~~~~p~~gl~~d~~g~l~v~~~~~~i~~~~~~g-~~~~~~~~~~~~~ 159 (289)
|..+++|..|- ..++++|+++++ +.|.........+++.|....||.||. -.+..+.-+...+ .+..+.
T Consensus 368 v~~~~~ge~lR-lHd~~LY~~d~~~~~Wk~~~~~~d~~~S~Ls~qgdG~lYA-k~~~~l~nLSs~~~~~~~v~------- 438 (1774)
T PF11725_consen 368 VHTDPDGEQLR-LHDDRLYQFDPNTARWKPPPDKSDTPFSSLSRQGDGKLYA-KDDDTLVNLSSGQMSEAEVD------- 438 (1774)
T ss_pred cccCCCCCeEE-eecCceeeeccccceecCCCCcccchhhhhcccCCCceEe-cCCCceeecCCCCcchhhhh-------
Confidence 44445555552 123456666633 333322233344554666777888887 3234455454333 222221
Q ss_pred cCccceEEcCCCcEEEeeCCCccCccccccccceecCCC-EEEEEeCCCCe-------EEEeeCCCCCcceEEEecCCCE
Q 022967 160 NLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHG-KLLKYDPSLNE-------TSILLDSLFFANGVALSKDEDY 231 (289)
Q Consensus 160 ~~~~~l~~~~dG~lyv~~~~~~~~~~~~~~~~~~~~~~g-~i~~~~~~~~~-------~~~~~~~~~~p~gl~~~~d~~~ 231 (289)
....+.+.++|.+-+-... ...+ .+...++..+. ...+.++......|.+++| +
T Consensus 439 -~l~sfSv~~~g~vA~L~~~---------------d~q~~qL~~m~~~~a~~~p~~~~~L~L~dG~a~A~~VgLs~d--r 500 (1774)
T PF11725_consen 439 -KLKSFSVAPDGTVAMLTGK---------------DGQTLQLHDMSPVDAPPTPRKTKTLQLADGKAQAQSVGLSND--R 500 (1774)
T ss_pred -hcccccccCCCceeeeecC---------------CCcceeeeccCccccccCccceeeeeccCCchhhhheeecCC--e
Confidence 1223455666655332211 0011 23333322111 1123344445666777755 5
Q ss_pred EEEEeCCCCeEEEEEec
Q 022967 232 LVVCETFKFRCLKYWLK 248 (289)
Q Consensus 232 l~v~~~~~~~i~~~~~~ 248 (289)
|||+|+. +++|.-++.
T Consensus 501 LFvADse-GkLYsa~l~ 516 (1774)
T PF11725_consen 501 LFVADSE-GKLYSADLP 516 (1774)
T ss_pred EEEEeCC-CCEEecccc
Confidence 9999875 778877653
No 307
>PF14269 Arylsulfotran_2: Arylsulfotransferase (ASST)
Probab=73.69 E-value=59 Score=28.11 Aligned_cols=36 Identities=17% Similarity=0.114 Sum_probs=26.5
Q ss_pred cCCcceEEEccCCCEEEEec-CCeEEEEe-cCCceEEe
Q 022967 76 LNGPEDVCVDRNGVLYTATR-DGWIKRLH-KNGTWENW 111 (289)
Q Consensus 76 ~~~p~~l~~d~~g~l~v~~~-~g~i~~~~-~~g~~~~~ 111 (289)
..+..+|..+++|++.++.+ -..|++++ .+|++...
T Consensus 143 ~~HiNsV~~~~~G~yLiS~R~~~~i~~I~~~tG~I~W~ 180 (299)
T PF14269_consen 143 YFHINSVDKDDDGDYLISSRNTSTIYKIDPSTGKIIWR 180 (299)
T ss_pred ccEeeeeeecCCccEEEEecccCEEEEEECCCCcEEEE
Confidence 34566688888999888874 47899999 67776543
No 308
>PF13570 PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A.
Probab=73.60 E-value=5.8 Score=22.49 Aligned_cols=22 Identities=32% Similarity=0.459 Sum_probs=16.8
Q ss_pred EEEccCCCEEEEecCCeEEEEec
Q 022967 82 VCVDRNGVLYTATRDGWIKRLHK 104 (289)
Q Consensus 82 l~~d~~g~l~v~~~~g~i~~~~~ 104 (289)
++++ +|.||+++.+|.++.++.
T Consensus 17 ~~v~-~g~vyv~~~dg~l~ald~ 38 (40)
T PF13570_consen 17 PAVA-GGRVYVGTGDGNLYALDA 38 (40)
T ss_dssp -EEC-TSEEEEE-TTSEEEEEET
T ss_pred CEEE-CCEEEEEcCCCEEEEEeC
Confidence 3665 789999999999999984
No 309
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=73.45 E-value=87 Score=29.91 Aligned_cols=137 Identities=13% Similarity=0.091 Sum_probs=71.8
Q ss_pred eEEEEe-cCCceEEeeeec-CcCccCeEEcCCCcEEEEeCCC-------ceEEEeC-CC-eEEEEeccCCccccCccceE
Q 022967 98 WIKRLH-KNGTWENWKLIG-GDTLLGITTTQENEILVCDADK-------GLLKVTE-EG-VTVLASHVNGSRINLADDLI 166 (289)
Q Consensus 98 ~i~~~~-~~g~~~~~~~~~-~~p~~gl~~d~~g~l~v~~~~~-------~i~~~~~-~g-~~~~~~~~~~~~~~~~~~l~ 166 (289)
.+..+| ..+.+....... .+...++++- +|.||++...+ .++++|. .+ ...+..-.. .+.-.+++
T Consensus 302 ~ve~yd~~~~~w~~~a~m~~~r~~~~~~~~-~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a~M~~---~R~~~~v~ 377 (571)
T KOG4441|consen 302 SVECYDPKTNEWSSLAPMPSPRCRVGVAVL-NGKLYVVGGYDSGSDRLSSVERYDPRTNQWTPVAPMNT---KRSDFGVA 377 (571)
T ss_pred eeEEecCCcCcEeecCCCCcccccccEEEE-CCEEEEEccccCCCcccceEEEecCCCCceeccCCccC---ccccceeE
Confidence 455666 344454443322 2222277774 56899984332 3677773 33 433322110 01112333
Q ss_pred EcCCCcEEEeeCCCccCccccccccceecCCCEEEEEeCCCCeEEEeeCCCCCcceEEEecCCCEEEEEeCC------CC
Q 022967 167 AATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANGVALSKDEDYLVVCETF------KF 240 (289)
Q Consensus 167 ~~~dG~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~p~gl~~~~d~~~l~v~~~~------~~ 240 (289)
+ -+|.||+.-+.. .......+-+|||.+.+++.++.-...-.+.+...-++.||+.... -+
T Consensus 378 ~-l~g~iYavGG~d------------g~~~l~svE~YDp~~~~W~~va~m~~~r~~~gv~~~~g~iYi~GG~~~~~~~l~ 444 (571)
T KOG4441|consen 378 V-LDGKLYAVGGFD------------GEKSLNSVECYDPVTNKWTPVAPMLTRRSGHGVAVLGGKLYIIGGGDGSSNCLN 444 (571)
T ss_pred E-ECCEEEEEeccc------------cccccccEEEecCCCCcccccCCCCcceeeeEEEEECCEEEEEcCcCCCccccc
Confidence 2 278999976541 1112346899999998888776433322333333334459987541 15
Q ss_pred eEEEEEecCCC
Q 022967 241 RCLKYWLKGES 251 (289)
Q Consensus 241 ~i~~~~~~~~~ 251 (289)
.+.+||...++
T Consensus 445 sve~YDP~t~~ 455 (571)
T KOG4441|consen 445 SVECYDPETNT 455 (571)
T ss_pred eEEEEcCCCCc
Confidence 67889877553
No 310
>PF14339 DUF4394: Domain of unknown function (DUF4394)
Probab=73.11 E-value=53 Score=27.30 Aligned_cols=73 Identities=14% Similarity=0.166 Sum_probs=41.0
Q ss_pred CeEEcC-CCcEEEEeCCCceEEEe-CCC-eEEEE-eccCCccccCccceEEcC-CCcEEEeeCCCccCccccccccceec
Q 022967 121 GITTTQ-ENEILVCDADKGLLKVT-EEG-VTVLA-SHVNGSRINLADDLIAAT-DGSIYFSVASTKFGLHNWGLDLLEAK 195 (289)
Q Consensus 121 gl~~d~-~g~l~v~~~~~~i~~~~-~~g-~~~~~-~~~~~~~~~~~~~l~~~~-dG~lyv~~~~~~~~~~~~~~~~~~~~ 195 (289)
||.+.+ +|.||-.....+||.+| .+| .+.+- ......-.....++.|.| -.+|-|...
T Consensus 31 GID~Rpa~G~LYgl~~~g~lYtIn~~tG~aT~vg~s~~~~al~g~~~gvDFNP~aDRlRvvs~----------------- 93 (236)
T PF14339_consen 31 GIDFRPANGQLYGLGSTGRLYTINPATGAATPVGASPLTVALSGTAFGVDFNPAADRLRVVSN----------------- 93 (236)
T ss_pred EEEeecCCCCEEEEeCCCcEEEEECCCCeEEEeecccccccccCceEEEecCcccCcEEEEcc-----------------
Confidence 666653 67788776667788888 677 44441 111110001234566666 235655432
Q ss_pred CCCEEEEEeCCCCeEE
Q 022967 196 PHGKLLKYDPSLNETS 211 (289)
Q Consensus 196 ~~g~i~~~~~~~~~~~ 211 (289)
.|.=+|++++++.+.
T Consensus 94 -~GqNlR~npdtGav~ 108 (236)
T PF14339_consen 94 -TGQNLRLNPDTGAVT 108 (236)
T ss_pred -CCcEEEECCCCCCce
Confidence 356678888877643
No 311
>PF14339 DUF4394: Domain of unknown function (DUF4394)
Probab=72.51 E-value=33 Score=28.49 Aligned_cols=70 Identities=19% Similarity=0.157 Sum_probs=47.7
Q ss_pred CccceEEcC-CCcEEEeeCCCccCccccccccceecCCCEEEEEeCCCCeEEEee-C----CC-CCcceEEEecCCCEEE
Q 022967 161 LADDLIAAT-DGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILL-D----SL-FFANGVALSKDEDYLV 233 (289)
Q Consensus 161 ~~~~l~~~~-dG~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~-~----~~-~~p~gl~~~~d~~~l~ 233 (289)
..-+|.+-| +|.||--.. .++||.+|+.++..+.+. . .+ ....++.|.|--++|.
T Consensus 28 ~l~GID~Rpa~G~LYgl~~------------------~g~lYtIn~~tG~aT~vg~s~~~~al~g~~~gvDFNP~aDRlR 89 (236)
T PF14339_consen 28 SLVGIDFRPANGQLYGLGS------------------TGRLYTINPATGAATPVGASPLTVALSGTAFGVDFNPAADRLR 89 (236)
T ss_pred eEEEEEeecCCCCEEEEeC------------------CCcEEEEECCCCeEEEeecccccccccCceEEEecCcccCcEE
Confidence 345777777 788986532 378999999999877662 1 11 2257888999777788
Q ss_pred EEeCCCCeEEEEEecC
Q 022967 234 VCETFKFRCLKYWLKG 249 (289)
Q Consensus 234 v~~~~~~~i~~~~~~~ 249 (289)
|... ..+-+|++++.
T Consensus 90 vvs~-~GqNlR~npdt 104 (236)
T PF14339_consen 90 VVSN-TGQNLRLNPDT 104 (236)
T ss_pred EEcc-CCcEEEECCCC
Confidence 7743 35666777663
No 312
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=70.97 E-value=1.2e+02 Score=30.83 Aligned_cols=49 Identities=22% Similarity=0.135 Sum_probs=34.7
Q ss_pred CCEEEEE----eCCCCeEEEeeCCCCCcceEEEecCCCEEEEEeCCCCeEEEEE
Q 022967 197 HGKLLKY----DPSLNETSILLDSLFFANGVALSKDEDYLVVCETFKFRCLKYW 246 (289)
Q Consensus 197 ~g~i~~~----~~~~~~~~~~~~~~~~p~gl~~~~d~~~l~v~~~~~~~i~~~~ 246 (289)
.|.|+.+ +++...++.+..-......++|+||++.|.++ ++.+.|....
T Consensus 96 ~Gdi~~~~~~~~~~~~~~E~VG~vd~GI~a~~WSPD~Ella~v-T~~~~l~~mt 148 (928)
T PF04762_consen 96 SGDIILVREDPDPDEDEIEIVGSVDSGILAASWSPDEELLALV-TGEGNLLLMT 148 (928)
T ss_pred CceEEEEEccCCCCCceeEEEEEEcCcEEEEEECCCcCEEEEE-eCCCEEEEEe
Confidence 4778888 77777777765444556778999999977776 5566766544
No 313
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=69.70 E-value=1.2e+02 Score=29.91 Aligned_cols=146 Identities=16% Similarity=0.114 Sum_probs=77.3
Q ss_pred cceEEEccCCCEEEEecCCeEEEEe-cCCceEEee----eecCcCccCeEEcCCCcEEEE-eCCCceEEEe--C-CC---
Q 022967 79 PEDVCVDRNGVLYTATRDGWIKRLH-KNGTWENWK----LIGGDTLLGITTTQENEILVC-DADKGLLKVT--E-EG--- 146 (289)
Q Consensus 79 p~~l~~d~~g~l~v~~~~g~i~~~~-~~g~~~~~~----~~~~~p~~gl~~d~~g~l~v~-~~~~~i~~~~--~-~g--- 146 (289)
|..|+....|.+..-..+-.++.+. +.+...... .....+.+-.++++.++..++ +...+|..+. . ++
T Consensus 163 ~~~I~~~~~ge~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~ 242 (792)
T KOG1963|consen 163 PKSIVDNNSGEFKGIVHMCKIHIYFVPKHTKHTSSRDITVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSE 242 (792)
T ss_pred CccEEEcCCceEEEEEEeeeEEEEEecccceeeccchhhhhhcccceeEEeccccceEEEeccCCcEEEEeccccccccc
Confidence 7777777777766433344455554 222211100 001111225677777775554 3334454443 2 12
Q ss_pred -eEEEEeccCCccccCccceEEcCCCcEEEeeCCCccCccccccccceecCCCEEEEEeCCCCeEEEeeCCCCCc-ceEE
Q 022967 147 -VTVLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFA-NGVA 224 (289)
Q Consensus 147 -~~~~~~~~~~~~~~~~~~l~~~~dG~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~p-~gl~ 224 (289)
.+.+.-. ....+++.+..||....+.+. .+.+.+...++++ ..+...+..| .++.
T Consensus 243 t~t~lHWH-----~~~V~~L~fS~~G~~LlSGG~-----------------E~VLv~Wq~~T~~-kqfLPRLgs~I~~i~ 299 (792)
T KOG1963|consen 243 TCTLLHWH-----HDEVNSLSFSSDGAYLLSGGR-----------------EGVLVLWQLETGK-KQFLPRLGSPILHIV 299 (792)
T ss_pred cceEEEec-----ccccceeEEecCCceEeeccc-----------------ceEEEEEeecCCC-cccccccCCeeEEEE
Confidence 1222111 124678999999964444332 2344455555555 4454444444 6789
Q ss_pred EecCCCEEEEEeCCCCeEEEEEec
Q 022967 225 LSKDEDYLVVCETFKFRCLKYWLK 248 (289)
Q Consensus 225 ~~~d~~~l~v~~~~~~~i~~~~~~ 248 (289)
++||++ +|..-...+.|..+...
T Consensus 300 vS~ds~-~~sl~~~DNqI~li~~~ 322 (792)
T KOG1963|consen 300 VSPDSD-LYSLVLEDNQIHLIKAS 322 (792)
T ss_pred EcCCCC-eEEEEecCceEEEEecc
Confidence 999998 66655667888877653
No 314
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=68.82 E-value=69 Score=26.86 Aligned_cols=66 Identities=14% Similarity=0.124 Sum_probs=42.1
Q ss_pred ceEEEcc-CCCEEEEecCCeEEEEe-cCCceEEeee-ecCcCccCeEE-cCCCcEEEEeCCCceEEEe-CCC
Q 022967 80 EDVCVDR-NGVLYTATRDGWIKRLH-KNGTWENWKL-IGGDTLLGITT-TQENEILVCDADKGLLKVT-EEG 146 (289)
Q Consensus 80 ~~l~~d~-~g~l~v~~~~g~i~~~~-~~g~~~~~~~-~~~~p~~gl~~-d~~g~l~v~~~~~~i~~~~-~~g 146 (289)
..+.+|| .+.++++..++.++.+| .+|+++.... .....+ .++- ..++.++-...+..+..+| +.+
T Consensus 118 Nam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~rGHtDYvH-~vv~R~~~~qilsG~EDGtvRvWd~kt~ 188 (325)
T KOG0649|consen 118 NAMWLDPSENSILFAGGDGVIYQVDLEDGRIQREYRGHTDYVH-SVVGRNANGQILSGAEDGTVRVWDTKTQ 188 (325)
T ss_pred ceeEeccCCCcEEEecCCeEEEEEEecCCEEEEEEcCCcceee-eeeecccCcceeecCCCccEEEEecccc
Confidence 3578887 78888877999999999 7898765433 333444 5554 3456666554333344455 555
No 315
>smart00284 OLF Olfactomedin-like domains.
Probab=68.74 E-value=71 Score=26.95 Aligned_cols=149 Identities=14% Similarity=0.181 Sum_probs=76.0
Q ss_pred cCCcceEEEccCCCEEEEe-cCCeEEEEe-cCCceEEee---ee-----------cCcCccCeEEcCCCcEEEE---eCC
Q 022967 76 LNGPEDVCVDRNGVLYTAT-RDGWIKRLH-KNGTWENWK---LI-----------GGDTLLGITTTQENEILVC---DAD 136 (289)
Q Consensus 76 ~~~p~~l~~d~~g~l~v~~-~~g~i~~~~-~~g~~~~~~---~~-----------~~~p~~gl~~d~~g~l~v~---~~~ 136 (289)
..+...++. +|.||.-. ....|.|++ ..+...... .. +..-+ .+++|.+| |||- ...
T Consensus 74 ~~GtG~VVY--ngslYY~~~~s~~iiKydL~t~~v~~~~~Lp~a~y~~~~~Y~~~~~sdi-DlAvDE~G-LWvIYat~~~ 149 (255)
T smart00284 74 GQGTGVVVY--NGSLYFNKFNSHDICRFDLTTETYQKEPLLNGAGYNNRFPYAWGGFSDI-DLAVDENG-LWVIYATEQN 149 (255)
T ss_pred cccccEEEE--CceEEEEecCCccEEEEECCCCcEEEEEecCccccccccccccCCCccE-EEEEcCCc-eEEEEeccCC
Confidence 456666776 48998644 446799999 444432211 10 01124 67888766 6654 222
Q ss_pred Cc-e--EEEeCCC--eEEEEeccCCccccCccceEEcCCCcEEEeeCCCccCccccccccceecCCCEE-EEEeCCCCeE
Q 022967 137 KG-L--LKVTEEG--VTVLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKL-LKYDPSLNET 210 (289)
Q Consensus 137 ~~-i--~~~~~~g--~~~~~~~~~~~~~~~~~~l~~~~dG~lyv~~~~~~~~~~~~~~~~~~~~~~g~i-~~~~~~~~~~ 210 (289)
.+ | -++|++- ++..... .-.+....+.+.+ -|.||+++... ....+| +.||..+++-
T Consensus 150 ~g~ivvSkLnp~tL~ve~tW~T-~~~k~sa~naFmv--CGvLY~~~s~~--------------~~~~~I~yayDt~t~~~ 212 (255)
T smart00284 150 AGKIVISKLNPATLTIENTWIT-TYNKRSASNAFMI--CGILYVTRSLG--------------SKGEKVFYAYDTNTGKE 212 (255)
T ss_pred CCCEEEEeeCcccceEEEEEEc-CCCcccccccEEE--eeEEEEEccCC--------------CCCcEEEEEEECCCCcc
Confidence 33 2 3555433 2222111 1111112233333 58999987421 112344 6788876553
Q ss_pred EEeeCCC----CCcceEEEecCCCEEEEEeCCCCeEEEEEe
Q 022967 211 SILLDSL----FFANGVALSKDEDYLVVCETFKFRCLKYWL 247 (289)
Q Consensus 211 ~~~~~~~----~~p~gl~~~~d~~~l~v~~~~~~~i~~~~~ 247 (289)
+.+.-.+ .....|..+|..+.||+=|.+ -+..|++
T Consensus 213 ~~~~i~f~n~y~~~s~l~YNP~d~~LY~wdng--~~l~Y~v 251 (255)
T smart00284 213 GHLDIPFENMYEYISMLDYNPNDRKLYAWNNG--HLVHYDI 251 (255)
T ss_pred ceeeeeeccccccceeceeCCCCCeEEEEeCC--eEEEEEE
Confidence 3322222 223447788888889998764 3444443
No 316
>PRK10115 protease 2; Provisional
Probab=68.28 E-value=69 Score=31.34 Aligned_cols=74 Identities=5% Similarity=0.024 Sum_probs=44.3
Q ss_pred CccceEEcCCCc-EEEeeCCCccCccccccccceecCCCEEEEEeCCCCeE--EEeeCCCCCcceEEEecCCCEEEEEeC
Q 022967 161 LADDLIAATDGS-IYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNET--SILLDSLFFANGVALSKDEDYLVVCET 237 (289)
Q Consensus 161 ~~~~l~~~~dG~-lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~--~~~~~~~~~p~gl~~~~d~~~l~v~~~ 237 (289)
...++.++|||+ |.++... .+...-.|+.+|.++|+. +.+ .+.. .+++|++|++.+|++..
T Consensus 128 ~l~~~~~Spdg~~la~~~d~-------------~G~E~~~l~v~d~~tg~~l~~~i-~~~~--~~~~w~~D~~~~~y~~~ 191 (686)
T PRK10115 128 TLGGMAITPDNTIMALAEDF-------------LSRRQYGIRFRNLETGNWYPELL-DNVE--PSFVWANDSWTFYYVRK 191 (686)
T ss_pred EEeEEEECCCCCEEEEEecC-------------CCcEEEEEEEEECCCCCCCCccc-cCcc--eEEEEeeCCCEEEEEEe
Confidence 455677888886 3333221 122234688888877752 111 2222 45899999998887643
Q ss_pred C-----CCeEEEEEecCC
Q 022967 238 F-----KFRCLKYWLKGE 250 (289)
Q Consensus 238 ~-----~~~i~~~~~~~~ 250 (289)
. ...|+++++.+.
T Consensus 192 ~~~~~~~~~v~~h~lgt~ 209 (686)
T PRK10115 192 HPVTLLPYQVWRHTIGTP 209 (686)
T ss_pred cCCCCCCCEEEEEECCCC
Confidence 2 257888887654
No 317
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=68.22 E-value=25 Score=35.42 Aligned_cols=133 Identities=13% Similarity=0.136 Sum_probs=75.4
Q ss_pred cCCeEEEEecCCc--eEEeeeecC--cCccCeEEcCCC--cEEEEeCCCc---eEEEe---CCC-eEEEEeccCCccccC
Q 022967 95 RDGWIKRLHKNGT--WENWKLIGG--DTLLGITTTQEN--EILVCDADKG---LLKVT---EEG-VTVLASHVNGSRINL 161 (289)
Q Consensus 95 ~~g~i~~~~~~g~--~~~~~~~~~--~p~~gl~~d~~g--~l~v~~~~~~---i~~~~---~~g-~~~~~~~~~~~~~~~ 161 (289)
.+|+...||...+ +..+....+ ... ++++++++ .|+++....+ |..+| .+- .+++... .+.
T Consensus 182 ~sg~~~iWDlr~~~pii~ls~~~~~~~~S-~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~k~~~~H-----~~G 255 (1049)
T KOG0307|consen 182 PSGRAVIWDLRKKKPIIKLSDTPGRMHCS-VLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPLKILEGH-----QRG 255 (1049)
T ss_pred CCCCceeccccCCCcccccccCCCcccee-eeeeCCCCceeeeeecCCCCCceeEeecccccCCchhhhccc-----ccc
Confidence 4455556652222 222333333 234 89999887 4777754433 33333 122 2222111 123
Q ss_pred ccceEEcCCC-cEEEeeCCCccCccccccccceecCCCEEEEEeCCCCeEE-EeeCCCCCcceEEEecCCCEEEEEeCCC
Q 022967 162 ADDLIAATDG-SIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETS-ILLDSLFFANGVALSKDEDYLVVCETFK 239 (289)
Q Consensus 162 ~~~l~~~~dG-~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~-~~~~~~~~p~gl~~~~d~~~l~v~~~~~ 239 (289)
+-+|.+.+.+ ++.++.+ ..+++++.++.++++. .+.....+..-+.|.|..-.++-+....
T Consensus 256 ilslsWc~~D~~lllSsg-----------------kD~~ii~wN~~tgEvl~~~p~~~nW~fdv~w~pr~P~~~A~asfd 318 (1049)
T KOG0307|consen 256 ILSLSWCPQDPRLLLSSG-----------------KDNRIICWNPNTGEVLGELPAQGNWCFDVQWCPRNPSVMAAASFD 318 (1049)
T ss_pred eeeeccCCCCchhhhccc-----------------CCCCeeEecCCCceEeeecCCCCcceeeeeecCCCcchhhhheec
Confidence 4566666644 6666654 3578999999887643 2333344556677887655566666778
Q ss_pred CeEEEEEecCC
Q 022967 240 FRCLKYWLKGE 250 (289)
Q Consensus 240 ~~i~~~~~~~~ 250 (289)
++|.+|.+.+.
T Consensus 319 gkI~I~sl~~~ 329 (1049)
T KOG0307|consen 319 GKISIYSLQGT 329 (1049)
T ss_pred cceeeeeeecC
Confidence 99999988754
No 318
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=68.14 E-value=1.2e+02 Score=29.20 Aligned_cols=65 Identities=6% Similarity=0.096 Sum_probs=35.9
Q ss_pred CCcCCcceEEEccCCCEEEEe-cCCeEEEEec-CC-ceEEeeeecCcCccCeEEcCCCcEEEEeCCCce
Q 022967 74 GILNGPEDVCVDRNGVLYTAT-RDGWIKRLHK-NG-TWENWKLIGGDTLLGITTTQENEILVCDADKGL 139 (289)
Q Consensus 74 ~~~~~p~~l~~d~~g~l~v~~-~~g~i~~~~~-~g-~~~~~~~~~~~p~~gl~~d~~g~l~v~~~~~~i 139 (289)
|+...-.++|..+.|.+.++. -++-+..||+ .+ +..++.....+.. .+.+++||+=.++....+.
T Consensus 169 G~k~siYSLA~N~t~t~ivsGgtek~lr~wDprt~~kimkLrGHTdNVr-~ll~~dDGt~~ls~sSDgt 236 (735)
T KOG0308|consen 169 GPKDSIYSLAMNQTGTIIVSGGTEKDLRLWDPRTCKKIMKLRGHTDNVR-VLLVNDDGTRLLSASSDGT 236 (735)
T ss_pred CCccceeeeecCCcceEEEecCcccceEEeccccccceeeeeccccceE-EEEEcCCCCeEeecCCCce
Confidence 444555667877778787655 3454566663 22 3444443334444 6677777754444333443
No 319
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=67.70 E-value=18 Score=19.76 Aligned_cols=30 Identities=17% Similarity=0.024 Sum_probs=20.9
Q ss_pred CCCCcceEEEecCCCEEEEEeCCCCeEEEEE
Q 022967 216 SLFFANGVALSKDEDYLVVCETFKFRCLKYW 246 (289)
Q Consensus 216 ~~~~p~gl~~~~d~~~l~v~~~~~~~i~~~~ 246 (289)
.....+.++++|+++.+..+ ...+.|..||
T Consensus 10 h~~~i~~i~~~~~~~~~~s~-~~D~~i~vwd 39 (39)
T PF00400_consen 10 HSSSINSIAWSPDGNFLASG-SSDGTIRVWD 39 (39)
T ss_dssp SSSSEEEEEEETTSSEEEEE-ETTSEEEEEE
T ss_pred CCCcEEEEEEecccccceee-CCCCEEEEEC
Confidence 33456789999998855555 4557787775
No 320
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=66.22 E-value=19 Score=30.43 Aligned_cols=69 Identities=19% Similarity=0.123 Sum_probs=45.2
Q ss_pred CccceEEcCCCcEEEeeCCCccCccccccccceecCCCEEEEEeCCCCeE-EEeeCCCCCcceEEEecCCCEEEEEeCCC
Q 022967 161 LADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNET-SILLDSLFFANGVALSKDEDYLVVCETFK 239 (289)
Q Consensus 161 ~~~~l~~~~dG~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~-~~~~~~~~~p~gl~~~~d~~~l~v~~~~~ 239 (289)
..+++.+-||+.|..+.+. .++|..|.=++... .++.-.....|.++|+||-+ |..+....
T Consensus 253 Gv~gvrIRpD~KIlATAGW-----------------D~RiRVyswrtl~pLAVLkyHsagvn~vAfspd~~-lmAaaskD 314 (323)
T KOG0322|consen 253 GVSGVRIRPDGKILATAGW-----------------DHRIRVYSWRTLNPLAVLKYHSAGVNAVAFSPDCE-LMAAASKD 314 (323)
T ss_pred CccceEEccCCcEEeeccc-----------------CCcEEEEEeccCCchhhhhhhhcceeEEEeCCCCc-hhhhccCC
Confidence 4678899999999988764 24444444333332 22223345678899999966 66666777
Q ss_pred CeEEEEEe
Q 022967 240 FRCLKYWL 247 (289)
Q Consensus 240 ~~i~~~~~ 247 (289)
.+|..|++
T Consensus 315 ~rISLWkL 322 (323)
T KOG0322|consen 315 ARISLWKL 322 (323)
T ss_pred ceEEeeec
Confidence 88877653
No 321
>PF01011 PQQ: PQQ enzyme repeat family.; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A ....
Probab=66.21 E-value=20 Score=20.00 Aligned_cols=22 Identities=36% Similarity=0.625 Sum_probs=14.8
Q ss_pred CCEEEEecCCeEEEEe-cCCceE
Q 022967 88 GVLYTATRDGWIKRLH-KNGTWE 109 (289)
Q Consensus 88 g~l~v~~~~g~i~~~~-~~g~~~ 109 (289)
|.+|+++.+|.|+.+| .+|+..
T Consensus 1 ~~v~~~~~~g~l~AlD~~TG~~~ 23 (38)
T PF01011_consen 1 GRVYVGTPDGYLYALDAKTGKVL 23 (38)
T ss_dssp TEEEEETTTSEEEEEETTTTSEE
T ss_pred CEEEEeCCCCEEEEEECCCCCEE
Confidence 4567777777777777 566644
No 322
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=66.09 E-value=46 Score=31.18 Aligned_cols=50 Identities=18% Similarity=0.252 Sum_probs=37.3
Q ss_pred CCEEEEEeCCCCeEEEeeCCCCCcceEEEecCCCEEEEEeCCCCeEEEEEec
Q 022967 197 HGKLLKYDPSLNETSILLDSLFFANGVALSKDEDYLVVCETFKFRCLKYWLK 248 (289)
Q Consensus 197 ~g~i~~~~~~~~~~~~~~~~~~~p~gl~~~~d~~~l~v~~~~~~~i~~~~~~ 248 (289)
.|.|..||...+ .+.......-|+-++|+|+|..+.|+ ..++.+..||..
T Consensus 280 DgSiiLyD~~~~-~t~~~ka~~~P~~iaWHp~gai~~V~-s~qGelQ~FD~A 329 (545)
T PF11768_consen 280 DGSIILYDTTRG-VTLLAKAEFIPTLIAWHPDGAIFVVG-SEQGELQCFDMA 329 (545)
T ss_pred CCeEEEEEcCCC-eeeeeeecccceEEEEcCCCcEEEEE-cCCceEEEEEee
Confidence 478999998754 33444444668999999999955555 567899999975
No 323
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=65.48 E-value=28 Score=32.40 Aligned_cols=71 Identities=18% Similarity=0.121 Sum_probs=35.1
Q ss_pred CccceEEcCCCcEEEeeCCCccCccccccccceecCCCEEEEEeCCCCeEEEeeCC-CCCcceEEEecCCCEEEEEeCCC
Q 022967 161 LADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDS-LFFANGVALSKDEDYLVVCETFK 239 (289)
Q Consensus 161 ~~~~l~~~~dG~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~-~~~p~gl~~~~d~~~l~v~~~~~ 239 (289)
.++.+++.+||....+... .|.|..+|-++.++.-+... +..---++|+|||+++ ++--..
T Consensus 292 ~in~f~FS~DG~~LA~VSq-----------------DGfLRvF~fdt~eLlg~mkSYFGGLLCvcWSPDGKyI-vtGGED 353 (636)
T KOG2394|consen 292 SINEFAFSPDGKYLATVSQ-----------------DGFLRIFDFDTQELLGVMKSYFGGLLCVCWSPDGKYI-VTGGED 353 (636)
T ss_pred cccceeEcCCCceEEEEec-----------------CceEEEeeccHHHHHHHHHhhccceEEEEEcCCccEE-EecCCc
Confidence 4678888888875554432 24333344332222111100 1122346899999943 332333
Q ss_pred CeEEEEEecC
Q 022967 240 FRCLKYWLKG 249 (289)
Q Consensus 240 ~~i~~~~~~~ 249 (289)
.-|.+|.+..
T Consensus 354 DLVtVwSf~e 363 (636)
T KOG2394|consen 354 DLVTVWSFEE 363 (636)
T ss_pred ceEEEEEecc
Confidence 4455555443
No 324
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=65.44 E-value=1.3e+02 Score=28.85 Aligned_cols=182 Identities=18% Similarity=0.122 Sum_probs=87.9
Q ss_pred CcceEEE-ccCCCEEEEe-cCCeEEEEec-CCce------EEee---ee--cC-cCccCeEEcCCCcEEEEeCCCceEE-
Q 022967 78 GPEDVCV-DRNGVLYTAT-RDGWIKRLHK-NGTW------ENWK---LI--GG-DTLLGITTTQENEILVCDADKGLLK- 141 (289)
Q Consensus 78 ~p~~l~~-d~~g~l~v~~-~~g~i~~~~~-~g~~------~~~~---~~--~~-~p~~gl~~d~~g~l~v~~~~~~i~~- 141 (289)
.-.+++. -++..++++. -+++|..||. .|.. .... .. +. ... +++..+.|.++|+..-.+.++
T Consensus 119 YVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siY-SLA~N~t~t~ivsGgtek~lr~ 197 (735)
T KOG0308|consen 119 YVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIY-SLAMNQTGTIIVSGGTEKDLRL 197 (735)
T ss_pred hheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCcccee-eeecCCcceEEEecCcccceEE
Confidence 3455666 4566676443 6788999983 3311 1110 01 11 123 567767777777654445444
Q ss_pred Ee-CCC--eEEEEeccCCccccCccceEEcCCCcEEEeeCCCccCccccccccceecCCCEEEEEeCCC-CeEEEeeCCC
Q 022967 142 VT-EEG--VTVLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSL-NETSILLDSL 217 (289)
Q Consensus 142 ~~-~~g--~~~~~~~~~~~~~~~~~~l~~~~dG~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~-~~~~~~~~~~ 217 (289)
+| ..+ +..+... -.....+.+++||+=.++..+ .|.|-.+|... .-...+.-.-
T Consensus 198 wDprt~~kimkLrGH-----TdNVr~ll~~dDGt~~ls~sS-----------------DgtIrlWdLgqQrCl~T~~vH~ 255 (735)
T KOG0308|consen 198 WDPRTCKKIMKLRGH-----TDNVRVLLVNDDGTRLLSASS-----------------DGTIRLWDLGQQRCLATYIVHK 255 (735)
T ss_pred eccccccceeeeecc-----ccceEEEEEcCCCCeEeecCC-----------------CceEEeeeccccceeeeEEecc
Confidence 44 333 2222111 124668889999976666544 24343333321 1111222111
Q ss_pred CCcceEEEecCCCEEEEEeCCCCeEEEEEecCCCCcceeeeeccCCCCCCceeeCC-CCCEEEEEeCccc
Q 022967 218 FFANGVALSKDEDYLVVCETFKFRCLKYWLKGESKEQTEIFVENLPGGPDNIKLAP-DGSFWIAILQVFI 286 (289)
Q Consensus 218 ~~p~gl~~~~d~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~-~G~lwv~~~~g~i 286 (289)
...-.+..+++=.++|..++. +.|++=|+.... .....+-..-| ...+...+ +..+|++++.+-|
T Consensus 256 e~VWaL~~~~sf~~vYsG~rd-~~i~~Tdl~n~~-~~tlick~daP--v~~l~~~~~~~~~WvtTtds~I 321 (735)
T KOG0308|consen 256 EGVWALQSSPSFTHVYSGGRD-GNIYRTDLRNPA-KSTLICKEDAP--VLKLHLHEHDNSVWVTTTDSSI 321 (735)
T ss_pred CceEEEeeCCCcceEEecCCC-CcEEecccCCch-hheEeecCCCc--hhhhhhccccCCceeeeccccc
Confidence 223345555666677777654 667777765431 11111111111 12233332 2346999887654
No 325
>PHA02790 Kelch-like protein; Provisional
Probab=65.33 E-value=1.2e+02 Score=28.22 Aligned_cols=140 Identities=10% Similarity=0.069 Sum_probs=69.5
Q ss_pred CCCEEE-EecC-----CeEEEEec-CCceEEeeeec-CcCccCeEEcCCCcEEEEeCC---CceEEEe-CCC-eEEEEec
Q 022967 87 NGVLYT-ATRD-----GWIKRLHK-NGTWENWKLIG-GDTLLGITTTQENEILVCDAD---KGLLKVT-EEG-VTVLASH 153 (289)
Q Consensus 87 ~g~l~v-~~~~-----g~i~~~~~-~g~~~~~~~~~-~~p~~gl~~d~~g~l~v~~~~---~~i~~~~-~~g-~~~~~~~ 153 (289)
++.||+ |..+ ..+.++++ .+++....... .+...+++. -+|.||+.... ..+.+++ ..+ ...+..
T Consensus 271 ~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~~v~-~~~~iYviGG~~~~~sve~ydp~~n~W~~~~~- 348 (480)
T PHA02790 271 GEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYASGVP-ANNKLYVVGGLPNPTSVERWFHGDAAWVNMPS- 348 (480)
T ss_pred CCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcceEEE-ECCEEEEECCcCCCCceEEEECCCCeEEECCC-
Confidence 567884 3321 24777873 44444433211 111113333 36789987532 3467777 334 443321
Q ss_pred cCCccccCccceEEcCCCcEEEeeCCCccCccccccccceecCCCEEEEEeCCCCeEEEeeCCCCCcc--eEEEecCCCE
Q 022967 154 VNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFAN--GVALSKDEDY 231 (289)
Q Consensus 154 ~~~~~~~~~~~l~~~~dG~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~p~--gl~~~~d~~~ 231 (289)
.+. ......++.-+|.||+.-+.. . ....+.+|||++++++.... ...|. .-+..-++ .
T Consensus 349 l~~---~r~~~~~~~~~g~IYviGG~~-------------~-~~~~ve~ydp~~~~W~~~~~-m~~~r~~~~~~~~~~-~ 409 (480)
T PHA02790 349 LLK---PRCNPAVASINNVIYVIGGHS-------------E-TDTTTEYLLPNHDQWQFGPS-TYYPHYKSCALVFGR-R 409 (480)
T ss_pred CCC---CCcccEEEEECCEEEEecCcC-------------C-CCccEEEEeCCCCEEEeCCC-CCCccccceEEEECC-E
Confidence 111 111122334488999975431 0 11347789999888876532 22221 11222344 4
Q ss_pred EEEEeCCCCeEEEEEecCC
Q 022967 232 LVVCETFKFRCLKYWLKGE 250 (289)
Q Consensus 232 l~v~~~~~~~i~~~~~~~~ 250 (289)
+|+.. +...+||++.+
T Consensus 410 IYv~G---G~~e~ydp~~~ 425 (480)
T PHA02790 410 LFLVG---RNAEFYCESSN 425 (480)
T ss_pred EEEEC---CceEEecCCCC
Confidence 99883 34677877543
No 326
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=64.63 E-value=1.4e+02 Score=28.70 Aligned_cols=64 Identities=22% Similarity=0.190 Sum_probs=33.5
Q ss_pred EEEecCCCEEEEEeCCCCeEEEEEecCCCC-cceeee-eccCC------CCCCceeeCCCC-CEEEEEeCccc
Q 022967 223 VALSKDEDYLVVCETFKFRCLKYWLKGESK-EQTEIF-VENLP------GGPDNIKLAPDG-SFWIAILQVFI 286 (289)
Q Consensus 223 l~~~~d~~~l~v~~~~~~~i~~~~~~~~~~-~~~~~~-~~~~~------~~p~~i~~d~~G-~lwv~~~~g~i 286 (289)
+.+..|..+|.-+......|.+||+..... ...+.. .+..+ -.-.+|.+|..| ++++.+.++.|
T Consensus 223 vv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD~sI 295 (720)
T KOG0321|consen 223 VVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTDNSI 295 (720)
T ss_pred EEEEeccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEecCCcE
Confidence 344567775554544467788888863311 111111 11111 013458899988 45666666554
No 327
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=64.31 E-value=49 Score=31.28 Aligned_cols=68 Identities=15% Similarity=0.228 Sum_probs=46.1
Q ss_pred CccceEEcCCC-cEEEeeCCCccCccccccccceecCCCEEEEEeCCCCe-EEEeeCCCCCcceEEEecCCCEEEEEeCC
Q 022967 161 LADDLIAATDG-SIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNE-TSILLDSLFFANGVALSKDEDYLVVCETF 238 (289)
Q Consensus 161 ~~~~l~~~~dG-~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~-~~~~~~~~~~p~gl~~~~d~~~l~v~~~~ 238 (289)
.+..+.|.|-- .++|++.. .|..||....+ +..+..+..+-.+++++|.|+.|++. +.
T Consensus 568 ~vq~v~FHPs~p~lfVaTq~-------------------~vRiYdL~kqelvKkL~tg~kwiS~msihp~GDnli~g-s~ 627 (733)
T KOG0650|consen 568 LVQRVKFHPSKPYLFVATQR-------------------SVRIYDLSKQELVKKLLTGSKWISSMSIHPNGDNLILG-SY 627 (733)
T ss_pred ceeEEEecCCCceEEEEecc-------------------ceEEEehhHHHHHHHHhcCCeeeeeeeecCCCCeEEEe-cC
Confidence 45567777744 67777532 35556654332 22345677788999999999978877 55
Q ss_pred CCeEEEEEec
Q 022967 239 KFRCLKYWLK 248 (289)
Q Consensus 239 ~~~i~~~~~~ 248 (289)
.+++..||++
T Consensus 628 d~k~~WfDld 637 (733)
T KOG0650|consen 628 DKKMCWFDLD 637 (733)
T ss_pred CCeeEEEEcc
Confidence 6889889986
No 328
>KOG0918 consensus Selenium-binding protein [Inorganic ion transport and metabolism]
Probab=63.46 E-value=23 Score=31.69 Aligned_cols=29 Identities=17% Similarity=0.247 Sum_probs=24.4
Q ss_pred eEEEecCCCEEEEEeCCCCeEEEEEecCC
Q 022967 222 GVALSKDEDYLVVCETFKFRCLKYWLKGE 250 (289)
Q Consensus 222 gl~~~~d~~~l~v~~~~~~~i~~~~~~~~ 250 (289)
.+.+|-|.++|||+..-.+-|++||+.++
T Consensus 316 DilISmDDRFLYvs~WLHGDirQYdIsDP 344 (476)
T KOG0918|consen 316 DILISLDDRFLYVSNWLHGDIRQYDISDP 344 (476)
T ss_pred eeEEeecCcEEEEEeeeecceeeeccCCC
Confidence 45678899999999988888999998754
No 329
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=63.29 E-value=56 Score=27.54 Aligned_cols=76 Identities=14% Similarity=0.105 Sum_probs=45.4
Q ss_pred ccceEEcC--CCcEEEeeCCCccCccccccccceecCCCEEEEEeCC-CCeEEEee--CCCCCcceEEEecCCCEEEEEe
Q 022967 162 ADDLIAAT--DGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPS-LNETSILL--DSLFFANGVALSKDEDYLVVCE 236 (289)
Q Consensus 162 ~~~l~~~~--dG~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~-~~~~~~~~--~~~~~p~gl~~~~d~~~l~v~~ 236 (289)
-+++.+.| +++|-++... +||+. ++|+|+.++.. .+.+.... +-...--+++|++..+...++.
T Consensus 11 GysvqfSPf~~nrLavAt~q-~yGl~----------G~G~L~ile~~~~~gi~e~~s~d~~D~LfdV~Wse~~e~~~~~a 79 (311)
T KOG0277|consen 11 GYSVQFSPFVENRLAVATAQ-HYGLA----------GNGRLFILEVTDPKGIQECQSYDTEDGLFDVAWSENHENQVIAA 79 (311)
T ss_pred cceeEecccccchhheeehh-hcccc----------cCceEEEEecCCCCCeEEEEeeecccceeEeeecCCCcceEEEE
Confidence 34566666 5666666543 35443 56788888874 33333321 1122234678888666566666
Q ss_pred CCCCeEEEEEec
Q 022967 237 TFKFRCLKYWLK 248 (289)
Q Consensus 237 ~~~~~i~~~~~~ 248 (289)
.+.+.+..||..
T Consensus 80 ~GDGSLrl~d~~ 91 (311)
T KOG0277|consen 80 SGDGSLRLFDLT 91 (311)
T ss_pred ecCceEEEeccC
Confidence 788888888853
No 330
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=63.12 E-value=68 Score=28.77 Aligned_cols=52 Identities=12% Similarity=0.088 Sum_probs=36.9
Q ss_pred CCEEEEEeCCCCeEEEeeCCCCCcceEEEecCCCEEEEEeCCCCeEEEEEecC
Q 022967 197 HGKLLKYDPSLNETSILLDSLFFANGVALSKDEDYLVVCETFKFRCLKYWLKG 249 (289)
Q Consensus 197 ~g~i~~~~~~~~~~~~~~~~~~~p~gl~~~~d~~~l~v~~~~~~~i~~~~~~~ 249 (289)
...|..++..+|+.-...+.-.....+.|+.||. ++++.....+|+++|...
T Consensus 153 Dn~v~iWnv~tgeali~l~hpd~i~S~sfn~dGs-~l~TtckDKkvRv~dpr~ 204 (472)
T KOG0303|consen 153 DNTVSIWNVGTGEALITLDHPDMVYSMSFNRDGS-LLCTTCKDKKVRVIDPRR 204 (472)
T ss_pred CceEEEEeccCCceeeecCCCCeEEEEEeccCCc-eeeeecccceeEEEcCCC
Confidence 4567777877777544444334446788999998 667767779999998753
No 331
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=63.08 E-value=1e+02 Score=26.74 Aligned_cols=107 Identities=16% Similarity=0.090 Sum_probs=58.2
Q ss_pred CeEEcCCCcEEEEeCCCceEEEe-CCC-eEEEEeccCCccccCccceEEcCCCcEEEeeCCCccCccccccccceecCCC
Q 022967 121 GITTTQENEILVCDADKGLLKVT-EEG-VTVLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHG 198 (289)
Q Consensus 121 gl~~d~~g~l~v~~~~~~i~~~~-~~g-~~~~~~~~~~~~~~~~~~l~~~~dG~lyv~~~~~~~~~~~~~~~~~~~~~~g 198 (289)
.+++. ...-|++..+.|+..+| .+- .-.+.....-.+ ..+++.+. +.+.|+.+.. .
T Consensus 176 ~v~IS-Gn~AYvA~~d~GL~ivDVSnp~sPvli~~~n~g~--g~~sv~vs-dnr~y~vvy~------------------e 233 (370)
T COG5276 176 DVAIS-GNYAYVAWRDGGLTIVDVSNPHSPVLIGSYNTGP--GTYSVSVS-DNRAYLVVYD------------------E 233 (370)
T ss_pred eEEEe-cCeEEEEEeCCCeEEEEccCCCCCeEEEEEecCC--ceEEEEec-CCeeEEEEcc------------------c
Confidence 55664 33688888878888888 443 222222111100 23444444 4477887754 4
Q ss_pred EEEEEeCCCCe-EEEee-CCCCCcceE-EEecCCCEEEEEeCCCCeEEEEEecCC
Q 022967 199 KLLKYDPSLNE-TSILL-DSLFFANGV-ALSKDEDYLVVCETFKFRCLKYWLKGE 250 (289)
Q Consensus 199 ~i~~~~~~~~~-~~~~~-~~~~~p~gl-~~~~d~~~l~v~~~~~~~i~~~~~~~~ 250 (289)
+++..|.++-+ ..++. ..-.+|.++ .+.-.+++.|+++. .+.+...|++.+
T Consensus 234 gvlivd~s~~ssp~~~gsyet~~p~~~s~v~Vs~~~~Yvadg-a~gl~~idisnp 287 (370)
T COG5276 234 GVLIVDVSGPSSPTVFGSYETSNPVSISTVPVSGEYAYVADG-AKGLPIIDISNP 287 (370)
T ss_pred ceEEEecCCCCCceEeeccccCCcccccceecccceeeeecc-ccCceeEeccCC
Confidence 57777765332 12221 122334333 22335778999975 578888887654
No 332
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=62.68 E-value=95 Score=26.25 Aligned_cols=51 Identities=6% Similarity=-0.124 Sum_probs=26.7
Q ss_pred CCEEEEEeCCCCeEEEeeCCCCCcceEEEecCCCEEEEEeCCCCeEEEEEec
Q 022967 197 HGKLLKYDPSLNETSILLDSLFFANGVALSKDEDYLVVCETFKFRCLKYWLK 248 (289)
Q Consensus 197 ~g~i~~~~~~~~~~~~~~~~~~~p~gl~~~~d~~~l~v~~~~~~~i~~~~~~ 248 (289)
.-++|-++.. |+...+.....-.-...|+.-...+.++....+.|+.||+.
T Consensus 171 ~l~lwdvr~~-gk~~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir 221 (311)
T KOG0277|consen 171 TLRLWDVRSP-GKFMSIEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIR 221 (311)
T ss_pred eEEEEEecCC-CceeEEEeccceeEeecccccCCcEEEecCCCceEEEEehh
Confidence 3456666554 33322221111222334666555577776677788888865
No 333
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=62.28 E-value=1.1e+02 Score=27.42 Aligned_cols=31 Identities=13% Similarity=0.044 Sum_probs=23.1
Q ss_pred CCcceEEEecCCCEEEEEeCCCCeEEEEEecC
Q 022967 218 FFANGVALSKDEDYLVVCETFKFRCLKYWLKG 249 (289)
Q Consensus 218 ~~p~gl~~~~d~~~l~v~~~~~~~i~~~~~~~ 249 (289)
.-+.-++|++|+. +.++....+.++.||+..
T Consensus 124 ~diydL~Ws~d~~-~l~s~s~dns~~l~Dv~~ 154 (434)
T KOG1009|consen 124 DDIYDLAWSPDSN-FLVSGSVDNSVRLWDVHA 154 (434)
T ss_pred cchhhhhccCCCc-eeeeeeccceEEEEEecc
Confidence 3456789999998 445556678899999864
No 334
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=62.17 E-value=1.5e+02 Score=28.42 Aligned_cols=27 Identities=19% Similarity=0.148 Sum_probs=20.7
Q ss_pred CCcceEEEccCCCEEEEecCCeEEEEe
Q 022967 77 NGPEDVCVDRNGVLYTATRDGWIKRLH 103 (289)
Q Consensus 77 ~~p~~l~~d~~g~l~v~~~~g~i~~~~ 103 (289)
..|..++..|+|+..+...+|.-..+.
T Consensus 352 iyPq~L~hsPNGrfV~VcgdGEyiIyT 378 (794)
T KOG0276|consen 352 IYPQTLAHSPNGRFVVVCGDGEYIIYT 378 (794)
T ss_pred cchHHhccCCCCcEEEEecCccEEEEE
Confidence 458888999999988877777655554
No 335
>COG4222 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=60.25 E-value=1.3e+02 Score=27.15 Aligned_cols=31 Identities=26% Similarity=0.300 Sum_probs=20.6
Q ss_pred ceEEEecCCCEEEEEeCC---------------CCeEEEEEecCCC
Q 022967 221 NGVALSKDEDYLVVCETF---------------KFRCLKYWLKGES 251 (289)
Q Consensus 221 ~gl~~~~d~~~l~v~~~~---------------~~~i~~~~~~~~~ 251 (289)
-++++++|+++||..-.+ .-|+..||+....
T Consensus 203 Eglait~d~~~L~~~le~~l~~d~~~~d~~~~~~lRil~~d~~~~~ 248 (391)
T COG4222 203 EGLAITPDGKKLYALLEGALAQDGNKADPTGGSPLRILEYDLATKQ 248 (391)
T ss_pred eeEEecCCCceEEEEEeccccccccccCcccccceEEEEEecccCc
Confidence 467899999988865321 2366777776543
No 336
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=59.51 E-value=1.5e+02 Score=27.59 Aligned_cols=135 Identities=10% Similarity=0.009 Sum_probs=73.0
Q ss_pred EEecCCeEEEEec-CC--ceEEeeeecCcCccCeEEcCCCcEEEEeC-CCceEEEeCC--C-eEEEEeccCCccccCccc
Q 022967 92 TATRDGWIKRLHK-NG--TWENWKLIGGDTLLGITTTQENEILVCDA-DKGLLKVTEE--G-VTVLASHVNGSRINLADD 164 (289)
Q Consensus 92 v~~~~g~i~~~~~-~g--~~~~~~~~~~~p~~gl~~d~~g~l~v~~~-~~~i~~~~~~--g-~~~~~~~~~~~~~~~~~~ 164 (289)
.+..++.|..+|. .. ............. |+.+.+|+....+.. ++.++.+|.. . ...+... . .....
T Consensus 275 sGsr~~~I~~~dvR~~~~~~~~~~~H~qeVC-gLkws~d~~~lASGgnDN~~~Iwd~~~~~p~~~~~~H-~----aAVKA 348 (484)
T KOG0305|consen 275 SGSRDGKILNHDVRISQHVVSTLQGHRQEVC-GLKWSPDGNQLASGGNDNVVFIWDGLSPEPKFTFTEH-T----AAVKA 348 (484)
T ss_pred EecCCCcEEEEEEecchhhhhhhhcccceee-eeEECCCCCeeccCCCccceEeccCCCccccEEEecc-c----eeeeE
Confidence 4445565655551 11 1111222334567 999999987666532 2567777732 2 2222211 1 24567
Q ss_pred eEEcCC-CcEEEeeCCCccCccccccccceecCCCEEEEEeCCCCeEEEeeCCCCCcceEEEecCCCEEEEEeC-CCCeE
Q 022967 165 LIAATD-GSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANGVALSKDEDYLVVCET-FKFRC 242 (289)
Q Consensus 165 l~~~~d-G~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~p~gl~~~~d~~~l~v~~~-~~~~i 242 (289)
|++.|- ..|..+-++ .....|..+|..++....-.+.......|.|++..+.+..+-. ..+.|
T Consensus 349 ~awcP~q~~lLAsGGG---------------s~D~~i~fwn~~~g~~i~~vdtgsQVcsL~Wsk~~kEi~sthG~s~n~i 413 (484)
T KOG0305|consen 349 LAWCPWQSGLLATGGG---------------SADRCIKFWNTNTGARIDSVDTGSQVCSLIWSKKYKELLSTHGYSENQI 413 (484)
T ss_pred eeeCCCccCceEEcCC---------------CcccEEEEEEcCCCcEecccccCCceeeEEEcCCCCEEEEecCCCCCcE
Confidence 888883 345444332 2345666677776665444444445567899998886666543 23445
Q ss_pred EEEEe
Q 022967 243 LKYWL 247 (289)
Q Consensus 243 ~~~~~ 247 (289)
..|+.
T Consensus 414 ~lw~~ 418 (484)
T KOG0305|consen 414 TLWKY 418 (484)
T ss_pred EEEec
Confidence 55543
No 337
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=58.01 E-value=28 Score=31.15 Aligned_cols=48 Identities=13% Similarity=0.177 Sum_probs=28.4
Q ss_pred EEEccCCCEE-EEecCCeEEEEe-cCCceEEeeeecCcC--ccCeEEcCCCc
Q 022967 82 VCVDRNGVLY-TATRDGWIKRLH-KNGTWENWKLIGGDT--LLGITTTQENE 129 (289)
Q Consensus 82 l~~d~~g~l~-v~~~~g~i~~~~-~~g~~~~~~~~~~~p--~~gl~~d~~g~ 129 (289)
+.+.|++.+. .|..+|.|+.|+ ..|+.+........+ .+.++|++.|.
T Consensus 393 vvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~ 444 (459)
T KOG0288|consen 393 VVFSPDGSYVAAGSADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPSGS 444 (459)
T ss_pred eEECCCCceeeeccCCCcEEEEEccCceEEEEeccCCCCcceEEEEEcCCCc
Confidence 5667776655 556778888887 455665544333322 22666766654
No 338
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=56.63 E-value=78 Score=29.65 Aligned_cols=65 Identities=17% Similarity=0.098 Sum_probs=37.1
Q ss_pred cceEEcCCCcEEEeeCCCccCccccccccceecCCCEEEEEeCCCCeEEEeeCCCCCc-ceEEEecCCCEEEEEeCCCCe
Q 022967 163 DDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFA-NGVALSKDEDYLVVCETFKFR 241 (289)
Q Consensus 163 ~~l~~~~dG~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~p-~gl~~~~d~~~l~v~~~~~~~ 241 (289)
+.++...+|.|.++.. .|.|..||.-+.+......++..| ..+..+.||++++.+. . .-
T Consensus 434 sc~aTT~sG~IvvgS~------------------~GdIRLYdri~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc-~-ty 493 (644)
T KOG2395|consen 434 SCFATTESGYIVVGSL------------------KGDIRLYDRIGRRAKTALPGLGDAIKHVDVTADGKWILATC-K-TY 493 (644)
T ss_pred ceeeecCCceEEEeec------------------CCcEEeehhhhhhhhhcccccCCceeeEEeeccCcEEEEec-c-cE
Confidence 3556666777766642 366766765333333334454443 5778889999777663 2 33
Q ss_pred EEEEEe
Q 022967 242 CLKYWL 247 (289)
Q Consensus 242 i~~~~~ 247 (289)
|..++.
T Consensus 494 LlLi~t 499 (644)
T KOG2395|consen 494 LLLIDT 499 (644)
T ss_pred EEEEEE
Confidence 444443
No 339
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=56.22 E-value=1.2e+02 Score=25.38 Aligned_cols=118 Identities=13% Similarity=0.148 Sum_probs=67.6
Q ss_pred CcCccCeEEcCCCcEEEEeCCCceEE-Ee-CCC--eEEEEeccCCccccCccceEEcCCCcEEEeeCCCccCcccccccc
Q 022967 116 GDTLLGITTTQENEILVCDADKGLLK-VT-EEG--VTVLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDL 191 (289)
Q Consensus 116 ~~p~~gl~~d~~g~l~v~~~~~~i~~-~~-~~g--~~~~~~~~~~~~~~~~~~l~~~~dG~lyv~~~~~~~~~~~~~~~~ 191 (289)
+... .+.+..+|+.-++-...+.++ ++ ..| ++.+.. .. +...+++...|..-+.+-+
T Consensus 18 gaV~-avryN~dGnY~ltcGsdrtvrLWNp~rg~liktYsg----hG-~EVlD~~~s~Dnskf~s~G------------- 78 (307)
T KOG0316|consen 18 GAVR-AVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKTYSG----HG-HEVLDAALSSDNSKFASCG------------- 78 (307)
T ss_pred cceE-EEEEccCCCEEEEcCCCceEEeecccccceeeeecC----CC-ceeeeccccccccccccCC-------------
Confidence 3344 667777887555443344444 44 455 444322 11 2334555555543333322
Q ss_pred ceecCCCEEEEEeCCCCeEE-EeeCCCCCcceEEEecCCCEEEEEeCCCCeEEEEEecCCCCcceee
Q 022967 192 LEAKPHGKLLKYDPSLNETS-ILLDSLFFANGVALSKDEDYLVVCETFKFRCLKYWLKGESKEQTEI 257 (289)
Q Consensus 192 ~~~~~~g~i~~~~~~~~~~~-~~~~~~~~p~gl~~~~d~~~l~v~~~~~~~i~~~~~~~~~~~~~~~ 257 (289)
+.-.+..+|..+|+.. .+.......|.+.|..+.. +.++......++.||-........+.
T Consensus 79 ----gDk~v~vwDV~TGkv~Rr~rgH~aqVNtV~fNeesS-Vv~SgsfD~s~r~wDCRS~s~ePiQi 140 (307)
T KOG0316|consen 79 ----GDKAVQVWDVNTGKVDRRFRGHLAQVNTVRFNEESS-VVASGSFDSSVRLWDCRSRSFEPIQI 140 (307)
T ss_pred ----CCceEEEEEcccCeeeeecccccceeeEEEecCcce-EEEeccccceeEEEEcccCCCCccch
Confidence 2235777777777654 3445566778899987665 77777778889999976655444333
No 340
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=54.84 E-value=1.5e+02 Score=26.10 Aligned_cols=146 Identities=11% Similarity=0.089 Sum_probs=79.5
Q ss_pred CCEEEEecCCeEEEEec-CC-ceEEeeeecCcCccCeEEcCC--C-cEEEEeCCCceEEEe--CCC-eEEEE-eccCCcc
Q 022967 88 GVLYTATRDGWIKRLHK-NG-TWENWKLIGGDTLLGITTTQE--N-EILVCDADKGLLKVT--EEG-VTVLA-SHVNGSR 158 (289)
Q Consensus 88 g~l~v~~~~g~i~~~~~-~g-~~~~~~~~~~~p~~gl~~d~~--g-~l~v~~~~~~i~~~~--~~g-~~~~~-~~~~~~~ 158 (289)
..+.++..+|.|..|+. .| .++.+.......+ +++|-.. . .++.+.....|..+| ..+ ..++. ...++.+
T Consensus 41 ~~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N-~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~ 119 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTN-GVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTP 119 (376)
T ss_pred eeEEEEecCCeEEEEeccchhhhheecCCCCccc-ceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCc
Confidence 35668889999999983 34 4555555455556 8887542 2 366665544455565 222 22221 1111111
Q ss_pred ccCccceEEcCCCcEEEeeCCCccCccccccccceecCCCEEEEEeCCCCeE--EEee-CCCCCcceEEEecCCCEEEEE
Q 022967 159 INLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNET--SILL-DSLFFANGVALSKDEDYLVVC 235 (289)
Q Consensus 159 ~~~~~~l~~~~dG~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~--~~~~-~~~~~p~gl~~~~d~~~l~v~ 235 (289)
-..++..-++++.-+... .......|+.+|....+- ..+. ....-..-+.|+|..-.+.++
T Consensus 120 ---f~~ld~nck~~ii~~GtE-------------~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlS 183 (376)
T KOG1188|consen 120 ---FICLDLNCKKNIIACGTE-------------LTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLS 183 (376)
T ss_pred ---ceEeeccCcCCeEEeccc-------------cccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEe
Confidence 122333335555544221 112345677777653221 1121 122334567899977668888
Q ss_pred eCCCCeEEEEEecCC
Q 022967 236 ETFKFRCLKYWLKGE 250 (289)
Q Consensus 236 ~~~~~~i~~~~~~~~ 250 (289)
.+..+-|..||...+
T Consensus 184 GSvDGLvnlfD~~~d 198 (376)
T KOG1188|consen 184 GSVDGLVNLFDTKKD 198 (376)
T ss_pred ecccceEEeeecCCC
Confidence 888888899998754
No 341
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=54.70 E-value=1.3e+02 Score=28.43 Aligned_cols=108 Identities=16% Similarity=0.127 Sum_probs=63.5
Q ss_pred CccceEEcCCCcEEEeeCCCccCccccccccceecCCCEEEEEeCCCCeEEEeeC--CCCCcceEEEec-CCCEEEEEeC
Q 022967 161 LADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLD--SLFFANGVALSK-DEDYLVVCET 237 (289)
Q Consensus 161 ~~~~l~~~~dG~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~--~~~~p~gl~~~~-d~~~l~v~~~ 237 (289)
..+.|.+..||.+.++... .-++..+|+-..+...... ...+.-.+.|-| .++.+.++..
T Consensus 52 CVN~LeWn~dG~lL~SGSD-----------------D~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgA 114 (758)
T KOG1310|consen 52 CVNCLEWNADGELLASGSD-----------------DTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGA 114 (758)
T ss_pred eecceeecCCCCEEeecCC-----------------cceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEecc
Confidence 5678999999998887432 3467778876433333222 233344455655 4566888888
Q ss_pred CCCeEEEEEecCCCCccee-----e--eeccCCCCCCceeeCCCC--CEEEEEeCcc
Q 022967 238 FKFRCLKYWLKGESKEQTE-----I--FVENLPGGPDNIKLAPDG--SFWIAILQVF 285 (289)
Q Consensus 238 ~~~~i~~~~~~~~~~~~~~-----~--~~~~~~~~p~~i~~d~~G--~lwv~~~~g~ 285 (289)
+...|..||++..+.+... . .........-.|+..++| .+|.+..+|-
T Consensus 115 gDk~i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGt 171 (758)
T KOG1310|consen 115 GDKLIKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGT 171 (758)
T ss_pred CcceEEEEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcc
Confidence 8899999998742211110 0 000001123457777766 5788776553
No 342
>PRK13613 lipoprotein LpqB; Provisional
Probab=54.32 E-value=2.1e+02 Score=27.59 Aligned_cols=155 Identities=16% Similarity=0.150 Sum_probs=79.6
Q ss_pred CcceEEEccCCCEEEEe-cCCeEEEEe---cCCc----eEEeeeecCcCccCeEEcCCCcEEEEeCC---CceEEEe-CC
Q 022967 78 GPEDVCVDRNGVLYTAT-RDGWIKRLH---KNGT----WENWKLIGGDTLLGITTTQENEILVCDAD---KGLLKVT-EE 145 (289)
Q Consensus 78 ~p~~l~~d~~g~l~v~~-~~g~i~~~~---~~g~----~~~~~~~~~~p~~gl~~d~~g~l~v~~~~---~~i~~~~-~~ 145 (289)
.+.++++.++|...+.- .++..+.+. ..+. ...+.. +..++.-.||.+|.+|+++.. .+++++- .+
T Consensus 364 ~~~s~avS~~g~~~A~v~~~~~~l~vg~~~~~~~~~~~~~~~~~--~~~Lt~PS~d~~g~vWtvd~~~~~~~vl~v~~~~ 441 (599)
T PRK13613 364 PLRRVAVSRDESRAAGISADGDSVYVGSLTPGASIGVHSWGVTA--DGRLTSPSWDGRGDLWVVDRDPADPRLLWLLQGD 441 (599)
T ss_pred CccceEEcCCCceEEEEcCCCcEEEEeccCCCCccccccceeec--cCcccCCcCcCCCCEEEecCCCCCceEEEEEcCC
Confidence 45677888877766333 344444442 1222 112211 222235568888999999753 3356655 56
Q ss_pred C-eEEE-EeccCCccccCccceEEcCCC-cEE-EeeCCCccCccccccccceecCCCEEEEEeCCCCeE-----EEeeCC
Q 022967 146 G-VTVL-ASHVNGSRINLADDLIAATDG-SIY-FSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNET-----SILLDS 216 (289)
Q Consensus 146 g-~~~~-~~~~~~~~~~~~~~l~~~~dG-~ly-v~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~-----~~~~~~ 216 (289)
| ...+ .....+ ..+..|.+.+|| ++- +.+.... ... ..+.|.| +.+ |.. ..+...
T Consensus 442 G~~~~V~~~~l~g---~~I~~lrvSrDG~RvAvv~~~~g~---~~v--------~va~V~R-~~~-G~~~l~~~~~l~~~ 505 (599)
T PRK13613 442 GEPVEVRTPELDG---HRVVAVRVARDGVRVALIVEKDGR---RSL--------QIGRIVR-DAK-AVVSVEEFRSLAPE 505 (599)
T ss_pred CcEEEeeccccCC---CEeEEEEECCCccEEEEEEecCCC---cEE--------EEEEEEe-CCC-CcEEeeccEEeccC
Confidence 6 3222 212222 246788999999 443 3321100 000 0122333 222 322 223344
Q ss_pred CCCcceEEEecCCCEEEE-Ee--CCCCeEEEEEecCCC
Q 022967 217 LFFANGVALSKDEDYLVV-CE--TFKFRCLKYWLKGES 251 (289)
Q Consensus 217 ~~~p~gl~~~~d~~~l~v-~~--~~~~~i~~~~~~~~~ 251 (289)
+..+..++|..++. |.| +. .....++.+.++|..
T Consensus 506 l~~v~~~~W~~~~s-L~Vlg~~~~~~~~v~~v~vdG~~ 542 (599)
T PRK13613 506 LEDVTDMSWAGDSQ-LVVLGREEGGVQQARYVQVDGST 542 (599)
T ss_pred CCccceeEEcCCCE-EEEEeccCCCCcceEEEecCCcC
Confidence 55578889987776 666 42 235678888888753
No 343
>PRK10893 lipopolysaccharide exporter periplasmic protein; Provisional
Probab=54.29 E-value=89 Score=25.07 Aligned_cols=23 Identities=4% Similarity=-0.218 Sum_probs=11.3
Q ss_pred chhhhhhHHHHHHHHHHHHHHhc
Q 022967 17 RCVPVCSGIVLSCLLAFTLQIFF 39 (289)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~ 39 (289)
|.++++.+++++++++++++...
T Consensus 3 ~~~~~~~~il~~~~l~l~~W~l~ 25 (192)
T PRK10893 3 KTRRWVIILLALIALVLIGWNLA 25 (192)
T ss_pred hhHHHHHHHHHHHHHHHHHhhcc
Confidence 33455555455555555554443
No 344
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=54.19 E-value=2e+02 Score=27.27 Aligned_cols=82 Identities=15% Similarity=0.158 Sum_probs=46.1
Q ss_pred EEEEEeCCCCeEEEeeC-CCCCcceEEEecCCCEEEEEeCC--CCeEEEEEecCCCCcceeeeeccCCCCCCceeeCCCC
Q 022967 199 KLLKYDPSLNETSILLD-SLFFANGVALSKDEDYLVVCETF--KFRCLKYWLKGESKEQTEIFVENLPGGPDNIKLAPDG 275 (289)
Q Consensus 199 ~i~~~~~~~~~~~~~~~-~~~~p~gl~~~~d~~~l~v~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G 275 (289)
+.|.+....++...+.. .-.+.|.+.|+|.|+++.++... ++.+.-||.+-........ ........+.=|+.|
T Consensus 473 sfY~~e~~~~~~~lVk~~dk~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~~a~~k~~~~---~eh~~at~veWDPtG 549 (698)
T KOG2314|consen 473 SFYAVETNIKKPSLVKELDKKFANTVFWSPKGRFVVVAALVSRRGDLEFYDTDYADLKDTAS---PEHFAATEVEWDPTG 549 (698)
T ss_pred eEEEeecCCCchhhhhhhcccccceEEEcCCCcEEEEEEecccccceEEEecchhhhhhccC---ccccccccceECCCC
Confidence 45555433333333311 22567999999999988888765 5567777765211111100 001123457778888
Q ss_pred CEEEEEeC
Q 022967 276 SFWIAILQ 283 (289)
Q Consensus 276 ~lwv~~~~ 283 (289)
++.+++.+
T Consensus 550 RYvvT~ss 557 (698)
T KOG2314|consen 550 RYVVTSSS 557 (698)
T ss_pred CEEEEeee
Confidence 87776654
No 345
>PF13964 Kelch_6: Kelch motif
Probab=54.07 E-value=34 Score=20.24 Aligned_cols=37 Identities=24% Similarity=0.286 Sum_probs=24.5
Q ss_pred EcCCCcEEEeeCCCccCccccccccceecCCCEEEEEeCCCCeEEEee
Q 022967 167 AATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILL 214 (289)
Q Consensus 167 ~~~dG~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~ 214 (289)
+.-+++||+.-+.... ......+++||+++++.+.+.
T Consensus 8 v~~~~~iyv~GG~~~~-----------~~~~~~v~~yd~~t~~W~~~~ 44 (50)
T PF13964_consen 8 VVVGGKIYVFGGYDNS-----------GKYSNDVERYDPETNTWEQLP 44 (50)
T ss_pred EEECCEEEEECCCCCC-----------CCccccEEEEcCCCCcEEECC
Confidence 3346789987654210 223467999999998887663
No 346
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=53.76 E-value=1.5e+02 Score=25.70 Aligned_cols=56 Identities=23% Similarity=0.349 Sum_probs=33.8
Q ss_pred EEEEecCCeEEEEe---cCCceEEeee--------------ecCcCccCeEEcCCCc-EEEEeCCCceEEEe-CCC
Q 022967 90 LYTATRDGWIKRLH---KNGTWENWKL--------------IGGDTLLGITTTQENE-ILVCDADKGLLKVT-EEG 146 (289)
Q Consensus 90 l~v~~~~g~i~~~~---~~g~~~~~~~--------------~~~~p~~gl~~d~~g~-l~v~~~~~~i~~~~-~~g 146 (289)
|+.+..+|+|..|| ..|-+..... ..+..+ |+++..+|. +|.+...+++...+ .+|
T Consensus 204 LatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvn-gla~tSd~~~l~~~gtd~r~r~wn~~~G 278 (397)
T KOG4283|consen 204 LATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVN-GLAWTSDARYLASCGTDDRIRVWNMESG 278 (397)
T ss_pred EEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceee-eeeecccchhhhhccCccceEEeecccC
Confidence 44566888888887 3343332211 124456 999988884 66665556666666 555
No 347
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=53.48 E-value=36 Score=34.35 Aligned_cols=75 Identities=9% Similarity=0.003 Sum_probs=45.0
Q ss_pred cCccceEEcCCC--cEEEeeCCCccCccccccccceecCCCEEEEEeCCC--CeEEEeeCCCCCcceEEEecCCCEEEEE
Q 022967 160 NLADDLIAATDG--SIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSL--NETSILLDSLFFANGVALSKDEDYLVVC 235 (289)
Q Consensus 160 ~~~~~l~~~~dG--~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~--~~~~~~~~~~~~p~gl~~~~d~~~l~v~ 235 (289)
....+|++.||+ .|+++.... ..-.|...|.+. .-..++...-....++.|.+.+.++.++
T Consensus 207 ~~~S~l~WhP~~aTql~~As~dd---------------~~PviqlWDlR~assP~k~~~~H~~GilslsWc~~D~~lllS 271 (1049)
T KOG0307|consen 207 MHCSVLAWHPDHATQLLVASGDD---------------SAPVIQLWDLRFASSPLKILEGHQRGILSLSWCPQDPRLLLS 271 (1049)
T ss_pred cceeeeeeCCCCceeeeeecCCC---------------CCceeEeecccccCCchhhhcccccceeeeccCCCCchhhhc
Confidence 356789999987 477765431 112344445221 1112222333455667888877668888
Q ss_pred eCCCCeEEEEEecC
Q 022967 236 ETFKFRCLKYWLKG 249 (289)
Q Consensus 236 ~~~~~~i~~~~~~~ 249 (289)
....++|.+++.+.
T Consensus 272 sgkD~~ii~wN~~t 285 (1049)
T KOG0307|consen 272 SGKDNRIICWNPNT 285 (1049)
T ss_pred ccCCCCeeEecCCC
Confidence 77788888888764
No 348
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=52.97 E-value=39 Score=31.54 Aligned_cols=65 Identities=14% Similarity=0.139 Sum_probs=45.1
Q ss_pred cceEEEccCCCEEEEecCCeEEEEecCCc-eEEeeeecCcCccCeEEcCCCcEEEEeCCCceEEEe
Q 022967 79 PEDVCVDRNGVLYTATRDGWIKRLHKNGT-WENWKLIGGDTLLGITTTQENEILVCDADKGLLKVT 143 (289)
Q Consensus 79 p~~l~~d~~g~l~v~~~~g~i~~~~~~g~-~~~~~~~~~~p~~gl~~d~~g~l~v~~~~~~i~~~~ 143 (289)
-.+.+...+|.+.+++.+|.|..|+.-|. ........|.+++++.+..+|...++.....++.++
T Consensus 433 Fsc~aTT~sG~IvvgS~~GdIRLYdri~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc~tyLlLi~ 498 (644)
T KOG2395|consen 433 FSCFATTESGYIVVGSLKGDIRLYDRIGRRAKTALPGLGDAIKHVDVTADGKWILATCKTYLLLID 498 (644)
T ss_pred cceeeecCCceEEEeecCCcEEeehhhhhhhhhcccccCCceeeEEeeccCcEEEEecccEEEEEE
Confidence 45567777888999888888988885443 222223445665578787899988887766676665
No 349
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=52.39 E-value=1.6e+02 Score=25.59 Aligned_cols=59 Identities=12% Similarity=0.110 Sum_probs=31.7
Q ss_pred CCCCcceEEEecCCCEEEEEeCCCCeEEEEEecCC-CCcceeeeeccCCCCCCceeeCCCCCEEE
Q 022967 216 SLFFANGVALSKDEDYLVVCETFKFRCLKYWLKGE-SKEQTEIFVENLPGGPDNIKLAPDGSFWI 279 (289)
Q Consensus 216 ~~~~p~gl~~~~d~~~l~v~~~~~~~i~~~~~~~~-~~~~~~~~~~~~~~~p~~i~~d~~G~lwv 279 (289)
..+.-|+|+|+|.-+ .+++-...++..-||.+.+ ++...+.. +.-...-.+..+|.+|+
T Consensus 250 ~VYaVNsi~FhP~hg-tlvTaGsDGtf~FWDkdar~kLk~s~~~----~qpItcc~fn~~G~ifa 309 (347)
T KOG0647|consen 250 DVYAVNSIAFHPVHG-TLVTAGSDGTFSFWDKDARTKLKTSETH----PQPITCCSFNRNGSIFA 309 (347)
T ss_pred ceEEecceEeecccc-eEEEecCCceEEEecchhhhhhhccCcC----CCccceeEecCCCCEEE
Confidence 355679999999777 4455444455555665432 22222221 11122345667787654
No 350
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=51.99 E-value=1.6e+02 Score=25.49 Aligned_cols=73 Identities=14% Similarity=0.147 Sum_probs=40.3
Q ss_pred CCcEEEEeCC------CceEEEe-CCC-eEEEEeccCCccccCccceEEcCCCcEEEeeCCCccCccccccccceecCCC
Q 022967 127 ENEILVCDAD------KGLLKVT-EEG-VTVLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHG 198 (289)
Q Consensus 127 ~g~l~v~~~~------~~i~~~~-~~g-~~~~~~~~~~~~~~~~~~l~~~~dG~lyv~~~~~~~~~~~~~~~~~~~~~~g 198 (289)
++.|||.... +.++++| .+. .+.+.. .+..+ .....++.-++.||+.-+... ....
T Consensus 123 ~~~iYv~GG~~~~~~~~~v~~yd~~~~~W~~~~~-~p~~~--r~~~~~~~~~~~iYv~GG~~~-------------~~~~ 186 (323)
T TIGR03548 123 DGTLYVGGGNRNGKPSNKSYLFNLETQEWFELPD-FPGEP--RVQPVCVKLQNELYVFGGGSN-------------IAYT 186 (323)
T ss_pred CCEEEEEeCcCCCccCceEEEEcCCCCCeeECCC-CCCCC--CCcceEEEECCEEEEEcCCCC-------------cccc
Confidence 5789987421 3478888 444 554422 11111 112233445788999754310 0112
Q ss_pred EEEEEeCCCCeEEEeeC
Q 022967 199 KLLKYDPSLNETSILLD 215 (289)
Q Consensus 199 ~i~~~~~~~~~~~~~~~ 215 (289)
.+++||+++.+.+.+..
T Consensus 187 ~~~~yd~~~~~W~~~~~ 203 (323)
T TIGR03548 187 DGYKYSPKKNQWQKVAD 203 (323)
T ss_pred ceEEEecCCCeeEECCC
Confidence 46899999888877643
No 351
>PF08309 LVIVD: LVIVD repeat; InterPro: IPR013211 This repeat is found in bacterial and archaeal cell surface proteins, many of which are hypothetical. The secondary structure corresponding to this repeat is predicted to comprise 4 beta-strands, which may associate to form a beta-propeller. The repeat copy number varies from 2-14. This repeat is sometimes found with the PKD domain IPR000601 from INTERPRO.
Probab=49.99 E-value=50 Score=19.17 Aligned_cols=28 Identities=18% Similarity=0.175 Sum_probs=20.3
Q ss_pred ceEEEecCCCEEEEEeCCCCeEEEEEecCCC
Q 022967 221 NGVALSKDEDYLVVCETFKFRCLKYWLKGES 251 (289)
Q Consensus 221 ~gl~~~~d~~~l~v~~~~~~~i~~~~~~~~~ 251 (289)
.++++ .|+++|+++. ...+.++|+..++
T Consensus 5 ~~v~v--~g~yaYva~~-~~Gl~IvDISnPs 32 (42)
T PF08309_consen 5 RDVAV--SGNYAYVADG-NNGLVIVDISNPS 32 (42)
T ss_pred EEEEE--ECCEEEEEeC-CCCEEEEECCCCC
Confidence 34444 4788999965 4789999987653
No 352
>KOG3567 consensus Peptidylglycine alpha-amidating monooxygenase [Posttranslational modification, protein turnover, chaperones]
Probab=49.79 E-value=35 Score=31.16 Aligned_cols=20 Identities=20% Similarity=0.569 Sum_probs=17.4
Q ss_pred CCCCceeeCCCCCEEEEEeC
Q 022967 264 GGPDNIKLAPDGSFWIAILQ 283 (289)
Q Consensus 264 ~~p~~i~~d~~G~lwv~~~~ 283 (289)
-+|.+|.+|.||..|+....
T Consensus 467 ylphgl~~dkdgf~~~tdva 486 (501)
T KOG3567|consen 467 YLPHGLSIDKDGFYWVTDVA 486 (501)
T ss_pred ecCCcceecCCCcEEeeccc
Confidence 47999999999999998754
No 353
>COG4447 Uncharacterized protein related to plant photosystem II stability/assembly factor [General function prediction only]
Probab=49.45 E-value=1.3e+02 Score=25.92 Aligned_cols=21 Identities=33% Similarity=0.427 Sum_probs=11.9
Q ss_pred CCCcceEEEecCCCEEEEEeC
Q 022967 217 LFFANGVALSKDEDYLVVCET 237 (289)
Q Consensus 217 ~~~p~gl~~~~d~~~l~v~~~ 237 (289)
+..||.++.+.|++++-|...
T Consensus 170 ~~~~n~ia~s~dng~vaVg~r 190 (339)
T COG4447 170 LAVPNEIARSADNGYVAVGAR 190 (339)
T ss_pred hhhhhhhhhhccCCeEEEecC
Confidence 345666666666665555543
No 354
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=49.40 E-value=1.7e+02 Score=25.00 Aligned_cols=137 Identities=15% Similarity=0.155 Sum_probs=64.3
Q ss_pred ccCCCEEEEecCCeEEEEe-cCCceEEeeeecC-cCc-cCeEEcCCCcEEEEeCCCceEEEe-CCC--eEEEEeccCCcc
Q 022967 85 DRNGVLYTATRDGWIKRLH-KNGTWENWKLIGG-DTL-LGITTTQENEILVCDADKGLLKVT-EEG--VTVLASHVNGSR 158 (289)
Q Consensus 85 d~~g~l~v~~~~g~i~~~~-~~g~~~~~~~~~~-~p~-~gl~~d~~g~l~v~~~~~~i~~~~-~~g--~~~~~~~~~~~~ 158 (289)
|..-.+|+++..+++..+| ..|+.. |....+ +-- +.+.+ .+.+.+.-...++|.++ +.| .-.+... ..
T Consensus 21 dskT~v~igSHs~~~~avd~~sG~~~-We~ilg~RiE~sa~vv--gdfVV~GCy~g~lYfl~~~tGs~~w~f~~~-~~-- 94 (354)
T KOG4649|consen 21 DSKTLVVIGSHSGIVIAVDPQSGNLI-WEAILGVRIECSAIVV--GDFVVLGCYSGGLYFLCVKTGSQIWNFVIL-ET-- 94 (354)
T ss_pred CCceEEEEecCCceEEEecCCCCcEE-eehhhCceeeeeeEEE--CCEEEEEEccCcEEEEEecchhheeeeeeh-hh--
Confidence 3344566888888888888 566643 222222 111 02333 12233333335577777 666 2111110 00
Q ss_pred ccCccceEEcCCC-cEEEeeCCCccCccccccccceecCCCEEEEEeCCCCeEEEeeC--CCCCcceEEEecCCCEEEEE
Q 022967 159 INLADDLIAATDG-SIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLD--SLFFANGVALSKDEDYLVVC 235 (289)
Q Consensus 159 ~~~~~~l~~~~dG-~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~--~~~~p~gl~~~~d~~~l~v~ 235 (289)
. .. .-..|+++ -||.+... +..|.+|+.+.. -++.. +...-.+-++++-...||++
T Consensus 95 v-k~-~a~~d~~~glIycgshd------------------~~~yalD~~~~~-cVykskcgG~~f~sP~i~~g~~sly~a 153 (354)
T KOG4649|consen 95 V-KV-RAQCDFDGGLIYCGSHD------------------GNFYALDPKTYG-CVYKSKCGGGTFVSPVIAPGDGSLYAA 153 (354)
T ss_pred h-cc-ceEEcCCCceEEEecCC------------------CcEEEecccccc-eEEecccCCceeccceecCCCceEEEE
Confidence 0 01 12455554 57776532 456777765322 11111 00111222456644459999
Q ss_pred eCCCCeEEEEEecC
Q 022967 236 ETFKFRCLKYWLKG 249 (289)
Q Consensus 236 ~~~~~~i~~~~~~~ 249 (289)
.+. +++.+...+.
T Consensus 154 ~t~-G~vlavt~~~ 166 (354)
T KOG4649|consen 154 ITA-GAVLAVTKNP 166 (354)
T ss_pred ecc-ceEEEEccCC
Confidence 765 6677666543
No 355
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=48.37 E-value=2.6e+02 Score=26.93 Aligned_cols=63 Identities=10% Similarity=0.123 Sum_probs=33.5
Q ss_pred eEEEccCCCEEE-EecCCeEEEEecCCceEE----------eeeecCcCc--cCeEEcCCC-cEEEEeCCCceEEEe
Q 022967 81 DVCVDRNGVLYT-ATRDGWIKRLHKNGTWEN----------WKLIGGDTL--LGITTTQEN-EILVCDADKGLLKVT 143 (289)
Q Consensus 81 ~l~~d~~g~l~v-~~~~g~i~~~~~~g~~~~----------~~~~~~~p~--~gl~~d~~g-~l~v~~~~~~i~~~~ 143 (289)
.+.+..+..|.. +..|+.|.+||....... +.....+.. +.+..|..| +||+.-.++.||.++
T Consensus 223 vv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD~sIy~yn 299 (720)
T KOG0321|consen 223 VVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTDNSIYFYN 299 (720)
T ss_pred EEEEeccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEecCCcEEEEe
Confidence 345543445553 335888888882111111 111111111 156778777 477655567899998
No 356
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=45.84 E-value=2.9e+02 Score=26.69 Aligned_cols=142 Identities=10% Similarity=0.027 Sum_probs=75.9
Q ss_pred CCCEEEEecCCeEEEEe-cCC-ceEEeeeecCcCccCeEEcCCCcEEEEeCCCc-eEEEe-CCC--eEEEEeccCCcccc
Q 022967 87 NGVLYTATRDGWIKRLH-KNG-TWENWKLIGGDTLLGITTTQENEILVCDADKG-LLKVT-EEG--VTVLASHVNGSRIN 160 (289)
Q Consensus 87 ~g~l~v~~~~g~i~~~~-~~g-~~~~~~~~~~~p~~gl~~d~~g~l~v~~~~~~-i~~~~-~~g--~~~~~~~~~~~~~~ 160 (289)
..=+.+++.+..|..++ .++ ++..|........ .|+++|.--..++..+.- |-.++ +.+ -++. ..|. -+
T Consensus 67 knWiv~GsDD~~IrVfnynt~ekV~~FeAH~DyIR-~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qt---feGH-~H 141 (794)
T KOG0276|consen 67 KNWIVTGSDDMQIRVFNYNTGEKVKTFEAHSDYIR-SIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQT---FEGH-EH 141 (794)
T ss_pred cceEEEecCCceEEEEecccceeeEEeecccccee-eeeecCCCCeEEecCCccEEEEeeccCceeeeeE---EcCc-ce
Confidence 33445777888888888 333 5666666666666 889988765555544443 33344 444 2222 1221 24
Q ss_pred CccceEEcCCC-cEEEeeCCCccCccccccccceecCCCEEEEEeCCCCeEEEeeCCCCCcceEEEecCCCEEE-EEeCC
Q 022967 161 LADDLIAATDG-SIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANGVALSKDEDYLV-VCETF 238 (289)
Q Consensus 161 ~~~~l~~~~dG-~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~p~gl~~~~d~~~l~-v~~~~ 238 (289)
....+++.|+. +-+.+..- ..+-.||.+....-.++ +.......|-+.+.+-|+.-| ++...
T Consensus 142 yVMqv~fnPkD~ntFaS~sL---------------DrTVKVWslgs~~~nfT-l~gHekGVN~Vdyy~~gdkpylIsgaD 205 (794)
T KOG0276|consen 142 YVMQVAFNPKDPNTFASASL---------------DRTVKVWSLGSPHPNFT-LEGHEKGVNCVDYYTGGDKPYLISGAD 205 (794)
T ss_pred EEEEEEecCCCccceeeeec---------------cccEEEEEcCCCCCcee-eeccccCcceEEeccCCCcceEEecCC
Confidence 67788999854 55555321 12334555532211121 223344556677666443333 44455
Q ss_pred CCeEEEEEecC
Q 022967 239 KFRCLKYWLKG 249 (289)
Q Consensus 239 ~~~i~~~~~~~ 249 (289)
.+.|-+||.++
T Consensus 206 D~tiKvWDyQt 216 (794)
T KOG0276|consen 206 DLTIKVWDYQT 216 (794)
T ss_pred CceEEEeecch
Confidence 56666777554
No 357
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=45.50 E-value=2.3e+02 Score=25.43 Aligned_cols=99 Identities=16% Similarity=0.138 Sum_probs=56.6
Q ss_pred CCcceEEEccCCCEEEEecCCeEEEEe-cCCceEEeeeecCcCccCeEEcCCCcEEEEeCCCce-EEEeC-CC-eEEEEe
Q 022967 77 NGPEDVCVDRNGVLYTATRDGWIKRLH-KNGTWENWKLIGGDTLLGITTTQENEILVCDADKGL-LKVTE-EG-VTVLAS 152 (289)
Q Consensus 77 ~~p~~l~~d~~g~l~v~~~~g~i~~~~-~~g~~~~~~~~~~~p~~gl~~d~~g~l~v~~~~~~i-~~~~~-~g-~~~~~~ 152 (289)
+-.+.+.+.+.+.+|....+..|.++| ..|....- ..++.+++.+...+..+|.++....++ ..+|+ .+ -.....
T Consensus 261 ~~Vs~V~w~d~~v~yS~SwDHTIk~WDletg~~~~~-~~~~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~gs~v~~ 339 (423)
T KOG0313|consen 261 EPVSSVVWSDATVIYSVSWDHTIKVWDLETGGLKST-LTTNKSLNCISYSPLSKLLASGSSDRHIRLWDPRTGDGSVVSQ 339 (423)
T ss_pred cceeeEEEcCCCceEeecccceEEEEEeecccceee-eecCcceeEeecccccceeeecCCCCceeecCCCCCCCceeEE
Confidence 345567787788899888999999999 44432211 122344336777777788887655444 44552 22 111111
Q ss_pred ccCCccccCccceEEcCCC-cEEEee
Q 022967 153 HVNGSRINLADDLIAATDG-SIYFSV 177 (289)
Q Consensus 153 ~~~~~~~~~~~~l~~~~dG-~lyv~~ 177 (289)
...+. .+...++...|.. .++++.
T Consensus 340 s~~gH-~nwVssvkwsp~~~~~~~S~ 364 (423)
T KOG0313|consen 340 SLIGH-KNWVSSVKWSPTNEFQLVSG 364 (423)
T ss_pred eeecc-hhhhhheecCCCCceEEEEE
Confidence 12221 1356677888855 455554
No 358
>PF15240 Pro-rich: Proline-rich
Probab=45.42 E-value=14 Score=29.16 Aligned_cols=15 Identities=20% Similarity=0.191 Sum_probs=7.1
Q ss_pred hhhHHHHHHHHHHHH
Q 022967 21 VCSGIVLSCLLAFTL 35 (289)
Q Consensus 21 ~~~~~~~~~~~~~~~ 35 (289)
|++++|.++||+|..
T Consensus 1 MLlVLLSvALLALSS 15 (179)
T PF15240_consen 1 MLLVLLSVALLALSS 15 (179)
T ss_pred ChhHHHHHHHHHhhh
Confidence 445555555544433
No 359
>PRK07021 fliL flagellar basal body-associated protein FliL; Reviewed
Probab=45.29 E-value=40 Score=26.15 Aligned_cols=15 Identities=20% Similarity=0.501 Sum_probs=6.2
Q ss_pred CCCCCCCCCCCCCcc
Q 022967 3 PSSNPPPTTGSSSKR 17 (289)
Q Consensus 3 ~~~~~~~~~~~~~~~ 17 (289)
+++.+++.++..+++
T Consensus 3 ~~~~~~~~~~g~kkk 17 (162)
T PRK07021 3 SDSAIPPAKSGKKRK 17 (162)
T ss_pred CcccccccCCCCccc
Confidence 344444434434444
No 360
>PF06796 NapE: Periplasmic nitrate reductase protein NapE; InterPro: IPR010649 This family consists of several bacterial periplasmic nitrate reductase NapE proteins. Seven genes, napKEFDABC, encoding the periplasmic nitrate reductase system were cloned from the denitrifying phototrophic bacterium Rhodobacter sphaeroides. NapE is thought to be a transmembrane protein [].
Probab=45.15 E-value=53 Score=20.51 Aligned_cols=16 Identities=13% Similarity=0.227 Sum_probs=7.1
Q ss_pred CCCCCCCCcchhhhhh
Q 022967 8 PPTTGSSSKRCVPVCS 23 (289)
Q Consensus 8 ~~~~~~~~~~~~~~~~ 23 (289)
++++.+..+|...+.+
T Consensus 5 ~~~~~~~~~k~~E~~~ 20 (56)
T PF06796_consen 5 PKSESDKSTKRSELKA 20 (56)
T ss_pred CCCccccchhHHHHHH
Confidence 3344334444454444
No 361
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=44.94 E-value=2.1e+02 Score=24.77 Aligned_cols=69 Identities=22% Similarity=0.153 Sum_probs=38.3
Q ss_pred CCCcEEEeeCCCccCccccccccceecCCCEEEEEeCCCCeEEEeeCCC--CCcceEEEecCCCEEEEEeCCC----CeE
Q 022967 169 TDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSL--FFANGVALSKDEDYLVVCETFK----FRC 242 (289)
Q Consensus 169 ~dG~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~--~~p~gl~~~~d~~~l~v~~~~~----~~i 242 (289)
-++.||+.-+.. .......+++||+.+.+.+.+..-. ......+...++ .||+.-... ..+
T Consensus 122 ~~~~iYv~GG~~------------~~~~~~~v~~yd~~~~~W~~~~~~p~~~r~~~~~~~~~~-~iYv~GG~~~~~~~~~ 188 (323)
T TIGR03548 122 KDGTLYVGGGNR------------NGKPSNKSYLFNLETQEWFELPDFPGEPRVQPVCVKLQN-ELYVFGGGSNIAYTDG 188 (323)
T ss_pred ECCEEEEEeCcC------------CCccCceEEEEcCCCCCeeECCCCCCCCCCcceEEEECC-EEEEEcCCCCccccce
Confidence 468899975421 0112357999999988887764211 111222223334 488874321 246
Q ss_pred EEEEecCC
Q 022967 243 LKYWLKGE 250 (289)
Q Consensus 243 ~~~~~~~~ 250 (289)
++||+...
T Consensus 189 ~~yd~~~~ 196 (323)
T TIGR03548 189 YKYSPKKN 196 (323)
T ss_pred EEEecCCC
Confidence 78887654
No 362
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=43.67 E-value=57 Score=17.97 Aligned_cols=18 Identities=22% Similarity=0.248 Sum_probs=12.2
Q ss_pred ceEEEecCCCEEEEEeCC
Q 022967 221 NGVALSKDEDYLVVCETF 238 (289)
Q Consensus 221 ~gl~~~~d~~~l~v~~~~ 238 (289)
...+|+|||++|+++...
T Consensus 12 ~~p~~SpDGk~i~f~s~~ 29 (39)
T PF07676_consen 12 GSPAWSPDGKYIYFTSNR 29 (39)
T ss_dssp EEEEE-TTSSEEEEEEEC
T ss_pred cCEEEecCCCEEEEEecC
Confidence 345789999988877543
No 363
>PLN02193 nitrile-specifier protein
Probab=43.11 E-value=2.7e+02 Score=25.71 Aligned_cols=112 Identities=13% Similarity=0.147 Sum_probs=56.3
Q ss_pred CCCEEE-Eec-----CCeEEEEe-cCCceEEeeeec----CcC-ccCeEEcCCCcEEEEeCC------CceEEEe-CCC-
Q 022967 87 NGVLYT-ATR-----DGWIKRLH-KNGTWENWKLIG----GDT-LLGITTTQENEILVCDAD------KGLLKVT-EEG- 146 (289)
Q Consensus 87 ~g~l~v-~~~-----~g~i~~~~-~~g~~~~~~~~~----~~p-~~gl~~d~~g~l~v~~~~------~~i~~~~-~~g- 146 (289)
++.||+ +-. .+.++++| .+.++..+.... .+. + .++. -++.|||.... ..+..+| .+.
T Consensus 228 ~~~lYvfGG~~~~~~~ndv~~yD~~t~~W~~l~~~~~~P~~R~~h-~~~~-~~~~iYv~GG~~~~~~~~~~~~yd~~t~~ 305 (470)
T PLN02193 228 GSTLYVFGGRDASRQYNGFYSFDTTTNEWKLLTPVEEGPTPRSFH-SMAA-DEENVYVFGGVSATARLKTLDSYNIVDKK 305 (470)
T ss_pred CCEEEEECCCCCCCCCccEEEEECCCCEEEEcCcCCCCCCCccce-EEEE-ECCEEEEECCCCCCCCcceEEEEECCCCE
Confidence 578884 321 24588888 445565543221 111 2 3333 35678886421 2356777 444
Q ss_pred eEEEEeccCCccccCccceEEcCCCcEEEeeCCCccCccccccccceecCCCEEEEEeCCCCeEEEee
Q 022967 147 VTVLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILL 214 (289)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~l~~~~dG~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~ 214 (289)
.+.+.........+.-..+++ -+|.||+.-+.. ......+++||+++.+.+.+.
T Consensus 306 W~~~~~~~~~~~~R~~~~~~~-~~gkiyviGG~~-------------g~~~~dv~~yD~~t~~W~~~~ 359 (470)
T PLN02193 306 WFHCSTPGDSFSIRGGAGLEV-VQGKVWVVYGFN-------------GCEVDDVHYYDPVQDKWTQVE 359 (470)
T ss_pred EEeCCCCCCCCCCCCCcEEEE-ECCcEEEEECCC-------------CCccCceEEEECCCCEEEEec
Confidence 443322100001111122332 367888864320 011256999999988887764
No 364
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=43.11 E-value=2e+02 Score=24.07 Aligned_cols=107 Identities=11% Similarity=0.066 Sum_probs=56.2
Q ss_pred CccCeEEcCCCcEEEE-e---CCCceEEEeCCC-eEEEEeccCCccccCccceEEcCCCcEEEeeCCCccCccccccccc
Q 022967 118 TLLGITTTQENEILVC-D---ADKGLLKVTEEG-VTVLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLL 192 (289)
Q Consensus 118 p~~gl~~d~~g~l~v~-~---~~~~i~~~~~~g-~~~~~~~~~~~~~~~~~~l~~~~dG~lyv~~~~~~~~~~~~~~~~~ 192 (289)
.. ..++.++|..+.+ . ....++....++ ...+. .+..+. .-.++++|.+|+.+...
T Consensus 26 ~~-s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~~~~~~---~g~~l~---~PS~d~~g~~W~v~~~~------------ 86 (253)
T PF10647_consen 26 VT-SPAVSPDGSRVAAVSEGDGGRSLYVGPAGGPVRPVL---TGGSLT---RPSWDPDGWVWTVDDGS------------ 86 (253)
T ss_pred cc-ceEECCCCCeEEEEEEcCCCCEEEEEcCCCcceeec---cCCccc---cccccCCCCEEEEEcCC------------
Confidence 44 7778888864433 2 224466655444 43332 222233 33788999999986531
Q ss_pred eecCCCEEEEEeCCCCeEEE--e-eCCCC-CcceEEEecCCCEEEEEe--CCCCeEEEEEe
Q 022967 193 EAKPHGKLLKYDPSLNETSI--L-LDSLF-FANGVALSKDEDYLVVCE--TFKFRCLKYWL 247 (289)
Q Consensus 193 ~~~~~g~i~~~~~~~~~~~~--~-~~~~~-~p~gl~~~~d~~~l~v~~--~~~~~i~~~~~ 247 (289)
....+++.... ++... + ..... ....+.++|||.++-+.- .+..+|++--+
T Consensus 87 ---~~~~~~~~~~~-g~~~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V 143 (253)
T PF10647_consen 87 ---GGVRVVRDSAS-GTGEPVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGV 143 (253)
T ss_pred ---CceEEEEecCC-CcceeEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEE
Confidence 11233332222 22222 1 12222 456789999999776654 23466766544
No 365
>PF13807 GNVR: G-rich domain on putative tyrosine kinase
Probab=41.80 E-value=47 Score=22.30 Aligned_cols=31 Identities=19% Similarity=0.273 Sum_probs=14.3
Q ss_pred CCCCCCCCCCCCcchhhhhhHHHHHHHHHHHH
Q 022967 4 SSNPPPTTGSSSKRCVPVCSGIVLSCLLAFTL 35 (289)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 35 (289)
++.+|....+|.+.. .++..+++.+++.+++
T Consensus 46 ~A~~P~~P~~P~~~l-il~l~~~~Gl~lgi~~ 76 (82)
T PF13807_consen 46 PAIVPDKPVSPKRAL-ILALGLFLGLILGIGL 76 (82)
T ss_pred ccccCCCCCCCcHHH-HHHHHHHHHHHHHHHH
Confidence 345555666666552 2333333444433333
No 366
>PLN02153 epithiospecifier protein
Probab=40.76 E-value=2.5e+02 Score=24.51 Aligned_cols=17 Identities=29% Similarity=0.425 Sum_probs=13.2
Q ss_pred CEEEEEeCCCCeEEEee
Q 022967 198 GKLLKYDPSLNETSILL 214 (289)
Q Consensus 198 g~i~~~~~~~~~~~~~~ 214 (289)
..+++||+.+.+.+.+.
T Consensus 101 ~~v~~yd~~t~~W~~~~ 117 (341)
T PLN02153 101 SDFYSYDTVKNEWTFLT 117 (341)
T ss_pred CcEEEEECCCCEEEEec
Confidence 46899999988877653
No 367
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=40.57 E-value=1.2e+02 Score=27.34 Aligned_cols=52 Identities=12% Similarity=-0.056 Sum_probs=33.1
Q ss_pred CEEEEEeCCCCeEEEeeCCCCCcceEEEecCCCEEEEEeCCCCeEEEEEecC
Q 022967 198 GKLLKYDPSLNETSILLDSLFFANGVALSKDEDYLVVCETFKFRCLKYWLKG 249 (289)
Q Consensus 198 g~i~~~~~~~~~~~~~~~~~~~p~gl~~~~d~~~l~v~~~~~~~i~~~~~~~ 249 (289)
..|-.+|..+............+...+|+.|....+.+...++.|++||+..
T Consensus 216 nkiki~dlet~~~vssy~a~~~~wSC~wDlde~h~IYaGl~nG~VlvyD~R~ 267 (463)
T KOG1645|consen 216 NKIKIMDLETSCVVSSYIAYNQIWSCCWDLDERHVIYAGLQNGMVLVYDMRQ 267 (463)
T ss_pred ceEEEEecccceeeeheeccCCceeeeeccCCcceeEEeccCceEEEEEccC
Confidence 3566666654433332233356678899987765555556678999999853
No 368
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=40.13 E-value=2.6e+02 Score=24.62 Aligned_cols=54 Identities=13% Similarity=0.025 Sum_probs=40.0
Q ss_pred CCEEEEEeCCCCeEEEe-eCCCCCcceEEEecCCCEEEEEeCCCCeEEEEEecCC
Q 022967 197 HGKLLKYDPSLNETSIL-LDSLFFANGVALSKDEDYLVVCETFKFRCLKYWLKGE 250 (289)
Q Consensus 197 ~g~i~~~~~~~~~~~~~-~~~~~~p~gl~~~~d~~~l~v~~~~~~~i~~~~~~~~ 250 (289)
.|-|..+|+.+++.... .......|.+.+.|+.-.|.++.+..+.|..+++...
T Consensus 114 ~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~ 168 (385)
T KOG1034|consen 114 LGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTD 168 (385)
T ss_pred eeEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCC
Confidence 46678888876665433 2334456788899988779999899999999988754
No 369
>smart00284 OLF Olfactomedin-like domains.
Probab=39.83 E-value=2.3e+02 Score=23.92 Aligned_cols=116 Identities=11% Similarity=0.057 Sum_probs=56.6
Q ss_pred CeEEcCCCcEEEEeCC-CceEEEe-CCC-eE--EEEecc-CCccc------cCccceEEcCCCcEEEeeCCCccCccccc
Q 022967 121 GITTTQENEILVCDAD-KGLLKVT-EEG-VT--VLASHV-NGSRI------NLADDLIAATDGSIYFSVASTKFGLHNWG 188 (289)
Q Consensus 121 gl~~d~~g~l~v~~~~-~~i~~~~-~~g-~~--~~~~~~-~~~~~------~~~~~l~~~~dG~lyv~~~~~~~~~~~~~ 188 (289)
|..+- +|.||.--.. ..|.++| ..+ +. ...+.. -...+ ..--++++|-+| ||+.-...
T Consensus 78 G~VVY-ngslYY~~~~s~~iiKydL~t~~v~~~~~Lp~a~y~~~~~Y~~~~~sdiDlAvDE~G-LWvIYat~-------- 147 (255)
T smart00284 78 GVVVY-NGSLYFNKFNSHDICRFDLTTETYQKEPLLNGAGYNNRFPYAWGGFSDIDLAVDENG-LWVIYATE-------- 147 (255)
T ss_pred cEEEE-CceEEEEecCCccEEEEECCCCcEEEEEecCccccccccccccCCCccEEEEEcCCc-eEEEEecc--------
Confidence 55553 6888885433 5699999 666 32 211110 00111 112367777666 55542210
Q ss_pred cccceecCCCEEEEEeCCCCeEEEeeCC-CCC-cceEEEecCCCEEEEEeC---CCCeE-EEEEecCCC
Q 022967 189 LDLLEAKPHGKLLKYDPSLNETSILLDS-LFF-ANGVALSKDEDYLVVCET---FKFRC-LKYWLKGES 251 (289)
Q Consensus 189 ~~~~~~~~~g~i~~~~~~~~~~~~~~~~-~~~-p~gl~~~~d~~~l~v~~~---~~~~i-~~~~~~~~~ 251 (289)
+..++=.|-++||++=+++...+. ... ..+-+|=-.|. ||++++ ...+| +.||..+.+
T Consensus 148 ----~~~g~ivvSkLnp~tL~ve~tW~T~~~k~sa~naFmvCGv-LY~~~s~~~~~~~I~yayDt~t~~ 211 (255)
T smart00284 148 ----QNAGKIVISKLNPATLTIENTWITTYNKRSASNAFMICGI-LYVTRSLGSKGEKVFYAYDTNTGK 211 (255)
T ss_pred ----CCCCCEEEEeeCcccceEEEEEEcCCCcccccccEEEeeE-EEEEccCCCCCcEEEEEEECCCCc
Confidence 001112345889876666554332 211 12223333455 999975 23344 567766543
No 370
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=38.88 E-value=2.9e+02 Score=24.69 Aligned_cols=51 Identities=4% Similarity=-0.001 Sum_probs=29.9
Q ss_pred CEEEEEeCCCCeEEEEEecCCCCcceeeeeccCCCCCCceeeCCCCCEEEEEeC
Q 022967 230 DYLVVCETFKFRCLKYWLKGESKEQTEIFVENLPGGPDNIKLAPDGSFWIAILQ 283 (289)
Q Consensus 230 ~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~lwv~~~~ 283 (289)
.....+-+..+.|..+|+.... .---.....+...++++-+.|.+.+++..
T Consensus 304 ~~~l~s~SrDktIk~wdv~tg~---cL~tL~ghdnwVr~~af~p~Gkyi~ScaD 354 (406)
T KOG0295|consen 304 GQVLGSGSRDKTIKIWDVSTGM---CLFTLVGHDNWVRGVAFSPGGKYILSCAD 354 (406)
T ss_pred ccEEEeecccceEEEEeccCCe---EEEEEecccceeeeeEEcCCCeEEEEEec
Confidence 3345554555677777776431 11111234456778888888877777654
No 371
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=38.81 E-value=2.9e+02 Score=24.75 Aligned_cols=75 Identities=15% Similarity=0.024 Sum_probs=38.8
Q ss_pred ccceEEcCCCcE-EEeeCCCccCccccccccceecCC-CEEEEEeCCCC-----eEEEeeCCCCCcceEEEecCCCEEEE
Q 022967 162 ADDLIAATDGSI-YFSVASTKFGLHNWGLDLLEAKPH-GKLLKYDPSLN-----ETSILLDSLFFANGVALSKDEDYLVV 234 (289)
Q Consensus 162 ~~~l~~~~dG~l-yv~~~~~~~~~~~~~~~~~~~~~~-g~i~~~~~~~~-----~~~~~~~~~~~p~gl~~~~d~~~l~v 234 (289)
..++..++||+. ++...+. .. ..++.++.+.+ ....+...........-+. ++.+|+
T Consensus 229 ~~~~~~s~d~~~l~i~~~~~---------------~~~s~v~~~d~~~~~~~~~~~~~l~~~~~~~~~~v~~~-~~~~yi 292 (414)
T PF02897_consen 229 FVSVSRSKDGRYLFISSSSG---------------TSESEVYLLDLDDGGSPDAKPKLLSPREDGVEYYVDHH-GDRLYI 292 (414)
T ss_dssp EEEEEE-TTSSEEEEEEESS---------------SSEEEEEEEECCCTTTSS-SEEEEEESSSS-EEEEEEE-TTEEEE
T ss_pred EEEEEecCcccEEEEEEEcc---------------ccCCeEEEEeccccCCCcCCcEEEeCCCCceEEEEEcc-CCEEEE
Confidence 336788889864 4433221 12 46888887754 4555544333322222222 555666
Q ss_pred -EeC--CCCeEEEEEecCCCC
Q 022967 235 -CET--FKFRCLKYWLKGESK 252 (289)
Q Consensus 235 -~~~--~~~~i~~~~~~~~~~ 252 (289)
++. .+.+|.+++++....
T Consensus 293 ~Tn~~a~~~~l~~~~l~~~~~ 313 (414)
T PF02897_consen 293 LTNDDAPNGRLVAVDLADPSP 313 (414)
T ss_dssp EE-TT-TT-EEEEEETTSTSG
T ss_pred eeCCCCCCcEEEEeccccccc
Confidence 433 346898888876543
No 372
>COG4880 Secreted protein containing C-terminal beta-propeller domain distantly related to WD-40 repeats [General function prediction only]
Probab=38.61 E-value=3.2e+02 Score=25.15 Aligned_cols=10 Identities=20% Similarity=0.355 Sum_probs=5.1
Q ss_pred CeEEEEEecC
Q 022967 240 FRCLKYWLKG 249 (289)
Q Consensus 240 ~~i~~~~~~~ 249 (289)
..|+.+++.|
T Consensus 170 k~vw~~~fnG 179 (603)
T COG4880 170 KKVWVYNFNG 179 (603)
T ss_pred ceeEEEecCC
Confidence 4555555544
No 373
>PHA02819 hypothetical protein; Provisional
Probab=38.03 E-value=71 Score=20.90 Aligned_cols=17 Identities=18% Similarity=-0.046 Sum_probs=7.0
Q ss_pred CCCCCCCCCcchhhhhh
Q 022967 7 PPPTTGSSSKRCVPVCS 23 (289)
Q Consensus 7 ~~~~~~~~~~~~~~~~~ 23 (289)
|....++++.++..+..
T Consensus 36 ~~~~~~~~~~~~~~ii~ 52 (71)
T PHA02819 36 YNKKTKKSFLRYYLIIG 52 (71)
T ss_pred CcccccCChhHHHHHHH
Confidence 33333444444433333
No 374
>TIGR03803 Gloeo_Verruco Gloeo_Verruco repeat. This model describes a rare protein repeat, found so far in two species of Verrucomicrobia (Chthoniobacter flavus and Verrucomicrobium spinosum) and in four different proteins of Gloeobacter violaceus PCC7421. In the Verrucomicrobial species, the repeat region is followed by a PEP-CTERM protein-sorting signal, suggesting an extracellular location.
Probab=37.52 E-value=75 Score=17.58 Aligned_cols=28 Identities=21% Similarity=0.408 Sum_probs=17.8
Q ss_pred CCcEEEeeCCCccCccccccccceecCCCEEEEEeCCCCe
Q 022967 170 DGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNE 209 (289)
Q Consensus 170 dG~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~ 209 (289)
||++|.+... + .....|.|++++++++-
T Consensus 1 dg~lYGTT~~---G---------G~~~~GTvf~~~~~g~~ 28 (34)
T TIGR03803 1 GGTLYGTTSG---G---------GASGFGTLYRLSTAGGT 28 (34)
T ss_pred CCcEEEEccc---C---------CCCCceeEEEEcCCCCe
Confidence 5778887642 0 11245789999998543
No 375
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=37.00 E-value=2.4e+02 Score=23.35 Aligned_cols=60 Identities=13% Similarity=0.072 Sum_probs=30.7
Q ss_pred EEEecCCCEEEEEeCCCCeEEEEEecCCC-Ccce-eeee-ccCC-CCCCceeeCCCCCEEEEEe
Q 022967 223 VALSKDEDYLVVCETFKFRCLKYWLKGES-KEQT-EIFV-ENLP-GGPDNIKLAPDGSFWIAIL 282 (289)
Q Consensus 223 l~~~~d~~~l~v~~~~~~~i~~~~~~~~~-~~~~-~~~~-~~~~-~~p~~i~~d~~G~lwv~~~ 282 (289)
+++..-.++++++.+-...|.-||+.-+. .... ..|- ..+. .-...+++|+.|++.++..
T Consensus 187 lalyswn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~ 250 (350)
T KOG0641|consen 187 LALYSWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGH 250 (350)
T ss_pred EEEEEecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcceeeecc
Confidence 34444455677776666677767654211 0000 0011 1111 1234588999999887643
No 376
>PHA02844 putative transmembrane protein; Provisional
Probab=36.73 E-value=77 Score=20.96 Aligned_cols=20 Identities=15% Similarity=-0.051 Sum_probs=8.6
Q ss_pred CCCCCCCCCcchhhhhhHHH
Q 022967 7 PPPTTGSSSKRCVPVCSGIV 26 (289)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~ 26 (289)
|....++++.+...+..+++
T Consensus 38 ~~~~~~~~~~~~~~ii~i~~ 57 (75)
T PHA02844 38 VNKNNVCSSSTKIWILTIIF 57 (75)
T ss_pred ccccccCChhHHHHHHHHHH
Confidence 33334445555444433333
No 377
>KOG3567 consensus Peptidylglycine alpha-amidating monooxygenase [Posttranslational modification, protein turnover, chaperones]
Probab=36.19 E-value=64 Score=29.55 Aligned_cols=24 Identities=17% Similarity=0.210 Sum_probs=19.9
Q ss_pred CccccCccceEEcCCCcEEEeeCC
Q 022967 156 GSRINLADDLIAATDGSIYFSVAS 179 (289)
Q Consensus 156 ~~~~~~~~~l~~~~dG~lyv~~~~ 179 (289)
+..+..+.+|.+|.||..|++|..
T Consensus 463 ~~~fylphgl~~dkdgf~~~tdva 486 (501)
T KOG3567|consen 463 KNLFYLPHGLSIDKDGFYWVTDVA 486 (501)
T ss_pred CCceecCCcceecCCCcEEeeccc
Confidence 345667889999999999999864
No 378
>PF15416 DUF4623: Domain of unknown function (DUF4623)
Probab=35.17 E-value=3.2e+02 Score=24.20 Aligned_cols=110 Identities=15% Similarity=0.264 Sum_probs=62.6
Q ss_pred cEEEEeCC---CceEEEe--CCC-eEEEEeccCC-ccccCccceEEcCCCcEEEeeCCCccCccccccccceecCCCEEE
Q 022967 129 EILVCDAD---KGLLKVT--EEG-VTVLASHVNG-SRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLL 201 (289)
Q Consensus 129 ~l~v~~~~---~~i~~~~--~~g-~~~~~~~~~~-~~~~~~~~l~~~~dG~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~ 201 (289)
.++|..+. -.++.++ +.| +..+..+..+ ....++..|..-.+|++|++.-+..- ..--.||
T Consensus 145 ~VLvvsR~~~~pHLLkvsdLK~g~inpI~LdlTgVtgGTf~yNmgAl~nGH~Y~asLSG~~------------~SPLKiY 212 (442)
T PF15416_consen 145 HVLVVSRGTTKPHLLKVSDLKAGEINPIPLDLTGVTGGTFSYNMGALVNGHSYLASLSGGK------------ASPLKIY 212 (442)
T ss_pred EEEEEecCCCCceeeehhHhhcCCccceeeecccccCcccccchhhhcCCeEEEEeccCCC------------CCceEEE
Confidence 45555442 2466666 556 6555433222 12245667777789999998754100 0112578
Q ss_pred EEeCCCCeEEEeeC---------CCCC--cceEEEecCCC-EEEEEeCCCCeEEEEEecCC
Q 022967 202 KYDPSLNETSILLD---------SLFF--ANGVALSKDED-YLVVCETFKFRCLKYWLKGE 250 (289)
Q Consensus 202 ~~~~~~~~~~~~~~---------~~~~--p~gl~~~~d~~-~l~v~~~~~~~i~~~~~~~~ 250 (289)
.+..-+...+++++ +.++ --.+.++.+|+ ++++.|.....+.|+.+.+-
T Consensus 213 ~w~tPts~PevIa~inV~~I~gAg~RhGDn~S~nlD~nGnGyiFFgdnaat~ilR~~vsn~ 273 (442)
T PF15416_consen 213 YWETPTSAPEVIADINVGDIPGAGNRHGDNFSLNLDENGNGYIFFGDNAATNILRFTVSNY 273 (442)
T ss_pred EecCCCCCceEEEeeeeccCcccccccCcceeEEeccCCceEEEecCCccceEEEEEccCc
Confidence 77765555555532 1111 12345666554 67778777788999988764
No 379
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=35.14 E-value=2.4e+02 Score=26.57 Aligned_cols=58 Identities=12% Similarity=0.144 Sum_probs=30.8
Q ss_pred CcCccCeEEcCCCcEEEEeCCCceEEE-e-CCC-eEEEEeccCCccccCccceEEcCCCcEEEeeC
Q 022967 116 GDTLLGITTTQENEILVCDADKGLLKV-T-EEG-VTVLASHVNGSRINLADDLIAATDGSIYFSVA 178 (289)
Q Consensus 116 ~~p~~gl~~d~~g~l~v~~~~~~i~~~-~-~~g-~~~~~~~~~~~~~~~~~~l~~~~dG~lyv~~~ 178 (289)
+.++ .++|.+||....+....|.+|+ + ..- +.-+.. .-+.....+++.|||+..++-+
T Consensus 291 g~in-~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~mk----SYFGGLLCvcWSPDGKyIvtGG 351 (636)
T KOG2394|consen 291 GSIN-EFAFSPDGKYLATVSQDGFLRIFDFDTQELLGVMK----SYFGGLLCVCWSPDGKYIVTGG 351 (636)
T ss_pred cccc-ceeEcCCCceEEEEecCceEEEeeccHHHHHHHHH----hhccceEEEEEcCCccEEEecC
Confidence 3455 7888888876655444443332 2 111 110000 1123455789999998776643
No 380
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=35.00 E-value=3.1e+02 Score=23.99 Aligned_cols=128 Identities=13% Similarity=0.061 Sum_probs=61.1
Q ss_pred CeEEEEecCCceEEeeeecCcCccCeEEcCCCcEEEEeCCCceEEEe-CCC---eEEEEeccCCccccCccceEEc-CC-
Q 022967 97 GWIKRLHKNGTWENWKLIGGDTLLGITTTQENEILVCDADKGLLKVT-EEG---VTVLASHVNGSRINLADDLIAA-TD- 170 (289)
Q Consensus 97 g~i~~~~~~g~~~~~~~~~~~p~~gl~~d~~g~l~v~~~~~~i~~~~-~~g---~~~~~~~~~~~~~~~~~~l~~~-~d- 170 (289)
+.|+.||.-.+..........++.++.+..+ +|.|+. .+.|+.+. .+. +..+... ..|+|++.- |.
T Consensus 75 NkviIWDD~k~~~i~el~f~~~I~~V~l~r~-riVvvl-~~~I~VytF~~n~k~l~~~et~------~NPkGlC~~~~~~ 146 (346)
T KOG2111|consen 75 NKVIIWDDLKERCIIELSFNSEIKAVKLRRD-RIVVVL-ENKIYVYTFPDNPKLLHVIETR------SNPKGLCSLCPTS 146 (346)
T ss_pred ceEEEEecccCcEEEEEEeccceeeEEEcCC-eEEEEe-cCeEEEEEcCCChhheeeeecc------cCCCceEeecCCC
Confidence 5688887322222222223334337888654 566665 47788887 544 3333221 235555432 21
Q ss_pred CcEEEeeCCCccCccccccccceecCCCEEEEEeCCCCeE---EEeeCCCCCcceEEEecCCCEEEEEeCCCCeEE-EEE
Q 022967 171 GSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNET---SILLDSLFFANGVALSKDEDYLVVCETFKFRCL-KYW 246 (289)
Q Consensus 171 G~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~---~~~~~~~~~p~gl~~~~d~~~l~v~~~~~~~i~-~~~ 246 (289)
..-+++-.+ ...|.|-..|....+. ..+........-++++.+|. +..+.+..+++. +||
T Consensus 147 ~k~~LafPg---------------~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt-~vATaStkGTLIRIFd 210 (346)
T KOG2111|consen 147 NKSLLAFPG---------------FKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGT-LVATASTKGTLIRIFD 210 (346)
T ss_pred CceEEEcCC---------------CccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCcc-EEEEeccCcEEEEEEE
Confidence 222222111 1235555444332222 22222223334567888887 666656666654 455
Q ss_pred ec
Q 022967 247 LK 248 (289)
Q Consensus 247 ~~ 248 (289)
..
T Consensus 211 t~ 212 (346)
T KOG2111|consen 211 TE 212 (346)
T ss_pred cC
Confidence 43
No 381
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=33.84 E-value=4e+02 Score=26.35 Aligned_cols=133 Identities=11% Similarity=0.055 Sum_probs=63.4
Q ss_pred EecCCeEEEEecCC-----ceEEeeeecCcCccCeEEcCCC-cEEEEeCCCceE-EEe-C-CC-eEEEEeccCCccccCc
Q 022967 93 ATRDGWIKRLHKNG-----TWENWKLIGGDTLLGITTTQEN-EILVCDADKGLL-KVT-E-EG-VTVLASHVNGSRINLA 162 (289)
Q Consensus 93 ~~~~g~i~~~~~~g-----~~~~~~~~~~~p~~gl~~d~~g-~l~v~~~~~~i~-~~~-~-~g-~~~~~~~~~~~~~~~~ 162 (289)
...+|.|..||.+. ....|....-..+ -+.|+... ++.++....+.+ .+| . +. ...+.. .-...
T Consensus 106 ~s~nG~i~vWdlnk~~rnk~l~~f~EH~Rs~~-~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~~~-----nSESi 179 (839)
T KOG0269|consen 106 CSTNGVISVWDLNKSIRNKLLTVFNEHERSAN-KLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTFRS-----NSESI 179 (839)
T ss_pred ecCCCcEEEEecCccccchhhhHhhhhcccee-eeeeccCCccEEEecCCCceEEEEeeecccccccccc-----cchhh
Confidence 34567777777322 1112222122233 66666443 577766555543 344 2 22 222211 12367
Q ss_pred cceEEcC-CCcEEEeeCCCccCccccccccceecCCCEEEEEeCCCC-eEEEeeCCCCCc-ceEEEecCCCEEEEEeCCC
Q 022967 163 DDLIAAT-DGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLN-ETSILLDSLFFA-NGVALSKDEDYLVVCETFK 239 (289)
Q Consensus 163 ~~l~~~~-dG~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~-~~~~~~~~~~~p-~gl~~~~d~~~l~v~~~~~ 239 (289)
+++.+.| .++.|++... .|.|..+|...- +.+........| .-+-|+|++. |++..++
T Consensus 180 RDV~fsp~~~~~F~s~~d-----------------sG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~--~lATGGR 240 (839)
T KOG0269|consen 180 RDVKFSPGYGNKFASIHD-----------------SGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNRE--WLATGGR 240 (839)
T ss_pred hceeeccCCCceEEEecC-----------------CceEEEeeccCchhHHHHhhcccCceEEEeecCCCc--eeeecCC
Confidence 8999998 4666666432 466777776421 111111111222 2356888554 4554444
Q ss_pred -CeEEEEEecCC
Q 022967 240 -FRCLKYWLKGE 250 (289)
Q Consensus 240 -~~i~~~~~~~~ 250 (289)
..|.+|+..+.
T Consensus 241 DK~vkiWd~t~~ 252 (839)
T KOG0269|consen 241 DKMVKIWDMTDS 252 (839)
T ss_pred CccEEEEeccCC
Confidence 44556665543
No 382
>COG3308 Predicted membrane protein [Function unknown]
Probab=33.48 E-value=81 Score=23.04 Aligned_cols=40 Identities=18% Similarity=0.283 Sum_probs=21.8
Q ss_pred CCCCCCCCCCCCCCCcc-hhhhhhHHHHHHHHHHHHHHhccCCCc
Q 022967 1 MTPSSNPPPTTGSSSKR-CVPVCSGIVLSCLLAFTLQIFFFSPIS 44 (289)
Q Consensus 1 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 44 (289)
||-++.|.|+ .++ .+.+...-++++++.++.+..+.+|..
T Consensus 1 m~t~~~p~qp----r~a~~r~lalgs~iaLi~liL~weL~lap~~ 41 (131)
T COG3308 1 MTTSSIPMQP----RTATARLLALGSLIALIILILSWELWLAPLR 41 (131)
T ss_pred CCCCccCCCh----hHHHHHHHHHhhHHHHHHHHHHHHHHcCcCC
Confidence 7888888743 222 233333445555555566666655543
No 383
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=32.51 E-value=5.1e+02 Score=25.69 Aligned_cols=87 Identities=13% Similarity=0.127 Sum_probs=49.9
Q ss_pred CCEEEEEeCCC----CeEEEeeCCCCCcceEEEecCCCEEEEEeCCCCeEEEEEecCCCCcceeeeeccCCCCCCceeeC
Q 022967 197 HGKLLKYDPSL----NETSILLDSLFFANGVALSKDEDYLVVCETFKFRCLKYWLKGESKEQTEIFVENLPGGPDNIKLA 272 (289)
Q Consensus 197 ~g~i~~~~~~~----~~~~~~~~~~~~p~gl~~~~d~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d 272 (289)
+|.|..+|... +....+-+.-+..+.+.|++-.-.++++.+-...|-.||+..++- ...|..+- ...+.+.+-
T Consensus 109 nG~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S--~~t~~~nS-ESiRDV~fs 185 (839)
T KOG0269|consen 109 NGVISVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKS--KSTFRSNS-ESIRDVKFS 185 (839)
T ss_pred CCcEEEEecCccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccc--cccccccc-hhhhceeec
Confidence 46677777542 122234455677888999987777888877778899999864321 11122111 122333332
Q ss_pred -CCCCEEEEEeCccc
Q 022967 273 -PDGSFWIAILQVFI 286 (289)
Q Consensus 273 -~~G~lwv~~~~g~i 286 (289)
..++.+++.+.+|+
T Consensus 186 p~~~~~F~s~~dsG~ 200 (839)
T KOG0269|consen 186 PGYGNKFASIHDSGY 200 (839)
T ss_pred cCCCceEEEecCCce
Confidence 22566666666554
No 384
>PF02191 OLF: Olfactomedin-like domain; InterPro: IPR003112 The olfactomedin-domain was first identified in olfactomedin, an extracellular matrix protein of the olfactory neuroepithelium []. Members of this extracellular domain-family have since been shown to be present in several metazoan proteins, such as latrophilins, myocilins, optimedins and noelins, the latter being involved in the generation of neural crest cells. Myocilin is of considerable interest, as mutations in its olfactomedin-domain can lead to glaucoma []. The olfactomedin-domains in myocilin and optimedin are essential for the interaction between these two proteins [].; GO: 0005515 protein binding
Probab=32.50 E-value=3e+02 Score=23.10 Aligned_cols=141 Identities=12% Similarity=0.125 Sum_probs=75.1
Q ss_pred cCCcceEEEccCCCEEEEe-cCCeEEEEe-cCCceE-Eee--eec-----------CcCccCeEEcCCCcEEEE---eCC
Q 022967 76 LNGPEDVCVDRNGVLYTAT-RDGWIKRLH-KNGTWE-NWK--LIG-----------GDTLLGITTTQENEILVC---DAD 136 (289)
Q Consensus 76 ~~~p~~l~~d~~g~l~v~~-~~g~i~~~~-~~g~~~-~~~--~~~-----------~~p~~gl~~d~~g~l~v~---~~~ 136 (289)
..|...++. +|.||.-. ....|.+++ ..++.. ... ... ..-+ .+|+|..| |||- ...
T Consensus 69 ~~GtG~vVY--ngslYY~~~~s~~IvkydL~t~~v~~~~~L~~A~~~n~~~y~~~~~t~i-D~AvDE~G-LWvIYat~~~ 144 (250)
T PF02191_consen 69 WQGTGHVVY--NGSLYYNKYNSRNIVKYDLTTRSVVARRELPGAGYNNRFPYYWSGYTDI-DFAVDENG-LWVIYATEDN 144 (250)
T ss_pred eccCCeEEE--CCcEEEEecCCceEEEEECcCCcEEEEEECCccccccccceecCCCceE-EEEEcCCC-EEEEEecCCC
Confidence 566766776 58888544 557899999 444443 111 100 1124 67777665 6664 222
Q ss_pred Cc---eEEEeCCC--eEEEEe-ccCCccccCccceEEcCCCcEEEeeCCCccCccccccccceecCCCEE-EEEeCCCCe
Q 022967 137 KG---LLKVTEEG--VTVLAS-HVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKL-LKYDPSLNE 209 (289)
Q Consensus 137 ~~---i~~~~~~g--~~~~~~-~~~~~~~~~~~~l~~~~dG~lyv~~~~~~~~~~~~~~~~~~~~~~g~i-~~~~~~~~~ 209 (289)
++ |-++|++- ++.... ... +....+ ++---|.||+++.... ....| +.||..+++
T Consensus 145 ~g~ivvskld~~tL~v~~tw~T~~~--k~~~~n--aFmvCGvLY~~~s~~~--------------~~~~I~yafDt~t~~ 206 (250)
T PF02191_consen 145 NGNIVVSKLDPETLSVEQTWNTSYP--KRSAGN--AFMVCGVLYATDSYDT--------------RDTEIFYAFDTYTGK 206 (250)
T ss_pred CCcEEEEeeCcccCceEEEEEeccC--chhhcc--eeeEeeEEEEEEECCC--------------CCcEEEEEEECCCCc
Confidence 33 34455433 322211 111 111222 3334689999876421 11333 678877665
Q ss_pred EEEeeC----CCCCcceEEEecCCCEEEEEeCC
Q 022967 210 TSILLD----SLFFANGVALSKDEDYLVVCETF 238 (289)
Q Consensus 210 ~~~~~~----~~~~p~gl~~~~d~~~l~v~~~~ 238 (289)
.+.+.- ......-|..+|..+.||+=|.+
T Consensus 207 ~~~~~i~f~~~~~~~~~l~YNP~dk~LY~wd~G 239 (250)
T PF02191_consen 207 EEDVSIPFPNPYGNISMLSYNPRDKKLYAWDNG 239 (250)
T ss_pred eeceeeeeccccCceEeeeECCCCCeEEEEECC
Confidence 443322 23334567888988889998775
No 385
>PRK13614 lipoprotein LpqB; Provisional
Probab=32.37 E-value=4.6e+02 Score=25.16 Aligned_cols=96 Identities=17% Similarity=0.223 Sum_probs=48.9
Q ss_pred EEccCCCEEEEecC--CeEEEEecCCc--eE-----Ee--eeecCcCccCeEEcCCCc--EEEE-eCCCc-eEE--E--e
Q 022967 83 CVDRNGVLYTATRD--GWIKRLHKNGT--WE-----NW--KLIGGDTLLGITTTQENE--ILVC-DADKG-LLK--V--T 143 (289)
Q Consensus 83 ~~d~~g~l~v~~~~--g~i~~~~~~g~--~~-----~~--~~~~~~p~~gl~~d~~g~--l~v~-~~~~~-i~~--~--~ 143 (289)
.+|.+|.+|+.... ++|.++..+|. .. .. ....+..++.+.+..||. ..|. ..++. |+. + +
T Consensus 389 S~d~~g~vWtv~~g~~~~vv~~~~~g~~~~~~~~~~~v~~~~l~g~~I~~lrvSrDG~R~Avi~~~~g~~~V~va~V~R~ 468 (573)
T PRK13614 389 SFSPQDWVWTAGPGGNGRIVAYRPTGVAEGAQAPTVTLTADWLAGRTVKELRVSREGVRALVISEQNGKSRVQVAGIVRN 468 (573)
T ss_pred cccCCCCEEEeeCCCCceEEEEecCCCcccccccceeecccccCCCeeEEEEECCCccEEEEEEEeCCccEEEEEEEEeC
Confidence 67888899966543 47888775442 11 11 111233233777888883 2233 22221 222 2 2
Q ss_pred CCC-eEEEEeccCCccccCccceEEcCCCcEEEeeC
Q 022967 144 EEG-VTVLASHVNGSRINLADDLIAATDGSIYFSVA 178 (289)
Q Consensus 144 ~~g-~~~~~~~~~~~~~~~~~~l~~~~dG~lyv~~~ 178 (289)
.+| .+.+.....-.....+.++.+-.++.|.+...
T Consensus 469 ~~G~P~~L~~~~~~~~~~~~~sl~W~~~~sl~V~~~ 504 (573)
T PRK13614 469 EDGTPRELTAPITLAADSDADTGAWVGDSTVVVTKA 504 (573)
T ss_pred CCCCeEEccCceecccCCCcceeEEcCCCEEEEEec
Confidence 445 34442211101123566788888888887753
No 386
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=32.09 E-value=6.1e+02 Score=26.47 Aligned_cols=55 Identities=13% Similarity=0.178 Sum_probs=32.5
Q ss_pred CCEEEEEeCCCCeEEEeeC----CCCC--cceEEEecCCCEEEEEeCCCCeEEEEEecCCCCc
Q 022967 197 HGKLLKYDPSLNETSILLD----SLFF--ANGVALSKDEDYLVVCETFKFRCLKYWLKGESKE 253 (289)
Q Consensus 197 ~g~i~~~~~~~~~~~~~~~----~~~~--p~gl~~~~d~~~l~v~~~~~~~i~~~~~~~~~~~ 253 (289)
.|.|..+|......+.+.+ --+. -..+.++++.. ++.+.+. ..|.+|+.+|+.+.
T Consensus 1278 ~G~I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~hap-iiAsGs~-q~ikIy~~~G~~l~ 1338 (1387)
T KOG1517|consen 1278 DGDIQLLDLRMSSKETFLTIVAHWEYGSALTALTVHEHAP-IIASGSA-QLIKIYSLSGEQLN 1338 (1387)
T ss_pred CCeEEEEecccCcccccceeeeccccCccceeeeeccCCC-eeeecCc-ceEEEEecChhhhc
Confidence 5778888876422222111 1111 34567777766 6666444 88999999987554
No 387
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=31.97 E-value=1.2e+02 Score=18.10 Aligned_cols=29 Identities=17% Similarity=0.130 Sum_probs=20.0
Q ss_pred ceEEEecCCCEEEEEeCCCCeEEEEEecCC
Q 022967 221 NGVALSKDEDYLVVCETFKFRCLKYWLKGE 250 (289)
Q Consensus 221 ~gl~~~~d~~~l~v~~~~~~~i~~~~~~~~ 250 (289)
.-+.++|..+.+-++ +..+.|..|.+++.
T Consensus 15 ~~~~w~P~mdLiA~~-t~~g~v~v~Rl~~q 43 (47)
T PF12894_consen 15 SCMSWCPTMDLIALG-TEDGEVLVYRLNWQ 43 (47)
T ss_pred EEEEECCCCCEEEEE-ECCCeEEEEECCCc
Confidence 456889988855554 55688888877543
No 388
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=31.02 E-value=1.6e+02 Score=27.11 Aligned_cols=94 Identities=10% Similarity=0.023 Sum_probs=49.3
Q ss_pred eEEEccCCC-EEEEecCCeEEEEecCCceE--EeeeecCcCccCeEEcCCCcEEEEeCC-CceEEEeCCCeEEEEeccCC
Q 022967 81 DVCVDRNGV-LYTATRDGWIKRLHKNGTWE--NWKLIGGDTLLGITTTQENEILVCDAD-KGLLKVTEEGVTVLASHVNG 156 (289)
Q Consensus 81 ~l~~d~~g~-l~v~~~~g~i~~~~~~g~~~--~~~~~~~~p~~gl~~d~~g~l~v~~~~-~~i~~~~~~g~~~~~~~~~~ 156 (289)
.+..+|-+. +-++..+|.|..|+++-+-. .+.-..+... +|++|++|+..++..- +.+-.+|-..+..+.....
T Consensus 256 vm~qNP~NaVih~GhsnGtVSlWSP~skePLvKiLcH~g~V~-siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~t- 333 (545)
T KOG1272|consen 256 VMKQNPYNAVIHLGHSNGTVSLWSPNSKEPLVKILCHRGPVS-SIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYRT- 333 (545)
T ss_pred hhhcCCccceEEEcCCCceEEecCCCCcchHHHHHhcCCCcc-eEEECCCCcEEeecccccceeEeeeccccccceeec-
Confidence 345556333 34777788887777543311 1111123344 9999999987776533 3344444222111111000
Q ss_pred ccccCccceEEcCCCcEEEeeC
Q 022967 157 SRINLADDLIAATDGSIYFSVA 178 (289)
Q Consensus 157 ~~~~~~~~l~~~~dG~lyv~~~ 178 (289)
+ +....+.++..|.|-++.+
T Consensus 334 -p-~~a~~ls~SqkglLA~~~G 353 (545)
T KOG1272|consen 334 -P-HPASNLSLSQKGLLALSYG 353 (545)
T ss_pred -C-CCccccccccccceeeecC
Confidence 1 2345677777777776644
No 389
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=29.61 E-value=2.1e+02 Score=25.14 Aligned_cols=25 Identities=12% Similarity=0.066 Sum_probs=14.9
Q ss_pred eEEEecCCCEEEEEeCCCCeEEEEEe
Q 022967 222 GVALSKDEDYLVVCETFKFRCLKYWL 247 (289)
Q Consensus 222 gl~~~~d~~~l~v~~~~~~~i~~~~~ 247 (289)
-.+|+.|+. +.+.......|+|||.
T Consensus 358 Q~sfS~dgs-~lv~vcdd~~Vwrwdr 382 (385)
T KOG1034|consen 358 QTSFSRDGS-ILVLVCDDGTVWRWDR 382 (385)
T ss_pred eeeecccCc-EEEEEeCCCcEEEEEe
Confidence 346777777 3333344567777764
No 390
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=29.35 E-value=6e+02 Score=25.59 Aligned_cols=61 Identities=10% Similarity=0.297 Sum_probs=40.9
Q ss_pred EEEcc-CCCEEEEecCCeEEEEec-----CCceEEeeeecCcCccCeEEcCCCc--EEEEeCCCceEEEe
Q 022967 82 VCVDR-NGVLYTATRDGWIKRLHK-----NGTWENWKLIGGDTLLGITTTQENE--ILVCDADKGLLKVT 143 (289)
Q Consensus 82 l~~d~-~g~l~v~~~~g~i~~~~~-----~g~~~~~~~~~~~p~~gl~~d~~g~--l~v~~~~~~i~~~~ 143 (289)
+++.. ...+.+|-.+|.|..+.. .|....+...+..|.||+++..++. ++|++. ..|..+.
T Consensus 131 l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d~~s~lFv~Tt-~~V~~y~ 199 (933)
T KOG2114|consen 131 LAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSDGKSVLFVATT-EQVMLYS 199 (933)
T ss_pred EEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecCCceeEEEEec-ceeEEEE
Confidence 55554 345567888999988862 2444445566778888999987775 477765 5466665
No 391
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=29.24 E-value=6.8e+02 Score=26.15 Aligned_cols=148 Identities=13% Similarity=0.116 Sum_probs=71.9
Q ss_pred CcceEEEcc-CCCEE-EEecCCeEEEEec-----CCceEEeeeecCc--CccCeEEcCCC--cEEEEeCCCceEEEe-CC
Q 022967 78 GPEDVCVDR-NGVLY-TATRDGWIKRLHK-----NGTWENWKLIGGD--TLLGITTTQEN--EILVCDADKGLLKVT-EE 145 (289)
Q Consensus 78 ~p~~l~~d~-~g~l~-v~~~~g~i~~~~~-----~g~~~~~~~~~~~--p~~gl~~d~~g--~l~v~~~~~~i~~~~-~~ 145 (289)
.++.+..|- .|++. +|..+|.|..||. +--+..+...... .+ ++.+.+.| +|+-+.....|..+| ..
T Consensus 1210 ~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv-~~slq~~G~~elvSgs~~G~I~~~DlR~ 1288 (1387)
T KOG1517|consen 1210 LVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIV-HLSLQRQGLGELVSGSQDGDIQLLDLRM 1288 (1387)
T ss_pred cceeecccccCCceEEEeecCCceEEeecccCCccccceeecccCCcccce-eEEeecCCCcceeeeccCCeEEEEeccc
Confidence 344455554 56776 6668999999981 2223333332222 34 66665554 343333223455565 21
Q ss_pred -C----eEEEEeccCCccccCccceEEcCCCcEEEeeCCCccCccccccccceecCCCEEEEEeCCCCeEEEee--CC--
Q 022967 146 -G----VTVLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILL--DS-- 216 (289)
Q Consensus 146 -g----~~~~~~~~~~~~~~~~~~l~~~~dG~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~--~~-- 216 (289)
- +.+......|. ....|.+..+-.++.+... ..|-.|+..+.....+. ++
T Consensus 1289 ~~~e~~~~iv~~~~yGs---~lTal~VH~hapiiAsGs~------------------q~ikIy~~~G~~l~~~k~n~~F~ 1347 (1387)
T KOG1517|consen 1289 SSKETFLTIVAHWEYGS---ALTALTVHEHAPIIASGSA------------------QLIKIYSLSGEQLNIIKYNPGFM 1347 (1387)
T ss_pred CcccccceeeeccccCc---cceeeeeccCCCeeeecCc------------------ceEEEEecChhhhcccccCcccc
Confidence 1 12211111111 1345667666666655321 34555665543332221 11
Q ss_pred ---CCCcceEEEecCCCEEEEEeCCCCeEEEEEec
Q 022967 217 ---LFFANGVALSKDEDYLVVCETFKFRCLKYWLK 248 (289)
Q Consensus 217 ---~~~p~gl~~~~d~~~l~v~~~~~~~i~~~~~~ 248 (289)
...+..++|+|-.- +.++....+.|.+|...
T Consensus 1348 ~q~~gs~scL~FHP~~~-llAaG~~Ds~V~iYs~~ 1381 (1387)
T KOG1517|consen 1348 GQRIGSVSCLAFHPHRL-LLAAGSADSTVSIYSCE 1381 (1387)
T ss_pred cCcCCCcceeeecchhH-hhhhccCCceEEEeecC
Confidence 22335678887544 44444566777777543
No 392
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=29.22 E-value=1.1e+02 Score=26.01 Aligned_cols=55 Identities=13% Similarity=0.119 Sum_probs=35.2
Q ss_pred cceEEEccCCCEEE-EecCCeEEEEe-cCCceEEe-eeecCcCccCeEEcCCCcEEEEe
Q 022967 79 PEDVCVDRNGVLYT-ATRDGWIKRLH-KNGTWENW-KLIGGDTLLGITTTQENEILVCD 134 (289)
Q Consensus 79 p~~l~~d~~g~l~v-~~~~g~i~~~~-~~g~~~~~-~~~~~~p~~gl~~d~~g~l~v~~ 134 (289)
-.++.+-+|+.+.. +..++||.+++ .+.+.-.+ .-.....+ .++|.++-.|..+.
T Consensus 254 v~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVLkyHsagvn-~vAfspd~~lmAaa 311 (323)
T KOG0322|consen 254 VSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVLKYHSAGVN-AVAFSPDCELMAAA 311 (323)
T ss_pred ccceEEccCCcEEeecccCCcEEEEEeccCCchhhhhhhhccee-EEEeCCCCchhhhc
Confidence 45577888999984 44788888887 55543222 22235566 88898875555543
No 393
>COG1770 PtrB Protease II [Amino acid transport and metabolism]
Probab=29.18 E-value=5.5e+02 Score=25.06 Aligned_cols=76 Identities=13% Similarity=0.000 Sum_probs=42.8
Q ss_pred cccCccceEEcCCCcEEE--eeCCCccCccccccccceecCCCEEEEEeCCCCeEEEeeCCCCC-cceEEEecCCCEEEE
Q 022967 158 RINLADDLIAATDGSIYF--SVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFF-ANGVALSKDEDYLVV 234 (289)
Q Consensus 158 ~~~~~~~l~~~~dG~lyv--~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~-p~gl~~~~d~~~l~v 234 (289)
.+....++.+++|+++.. .|.. ++..-.|...|..+++. +.+.+.+ .-+++|..|++.+|.
T Consensus 127 ~f~~Lg~~~~s~D~~~la~s~D~~--------------G~e~y~lr~kdL~tg~~--~~d~i~~~~~~~~Wa~d~~~lfY 190 (682)
T COG1770 127 DFFSLGAASISPDHNLLAYSVDVL--------------GDEQYTLRFKDLATGEE--LPDEITNTSGSFAWAADGKTLFY 190 (682)
T ss_pred cceeeeeeeeCCCCceEEEEEecc--------------cccEEEEEEEecccccc--cchhhcccccceEEecCCCeEEE
Confidence 455666888999987433 2221 11122345556555443 2333333 456789999998888
Q ss_pred EeCCCC----eEEEEEecC
Q 022967 235 CETFKF----RCLKYWLKG 249 (289)
Q Consensus 235 ~~~~~~----~i~~~~~~~ 249 (289)
+....+ +|++..+.+
T Consensus 191 t~~d~~~rp~kv~~h~~gt 209 (682)
T COG1770 191 TRLDENHRPDKVWRHRLGT 209 (682)
T ss_pred EEEcCCCCcceEEEEecCC
Confidence 765433 455555544
No 394
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=28.44 E-value=2.1e+02 Score=27.86 Aligned_cols=20 Identities=15% Similarity=0.172 Sum_probs=15.9
Q ss_pred cCccceEEcCCC-cEEEeeCC
Q 022967 160 NLADDLIAATDG-SIYFSVAS 179 (289)
Q Consensus 160 ~~~~~l~~~~dG-~lyv~~~~ 179 (289)
.....+.+++|| ++|.+|..
T Consensus 125 ~rVTal~Ws~~~~k~ysGD~~ 145 (726)
T KOG3621|consen 125 CRVTALEWSKNGMKLYSGDSQ 145 (726)
T ss_pred ceEEEEEecccccEEeecCCC
Confidence 356789999999 68988865
No 395
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=27.67 E-value=5.9e+02 Score=24.92 Aligned_cols=129 Identities=12% Similarity=0.124 Sum_probs=0.0
Q ss_pred CccCeEEcCCC-cEEEEeCCCceEEEe---CCC--eEEEEeccCCccccCccceEEcCCCcEEEeeCCCccCcccccccc
Q 022967 118 TLLGITTTQEN-EILVCDADKGLLKVT---EEG--VTVLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDL 191 (289)
Q Consensus 118 p~~gl~~d~~g-~l~v~~~~~~i~~~~---~~g--~~~~~~~~~~~~~~~~~~l~~~~dG~lyv~~~~~~~~~~~~~~~~ 191 (289)
.. ++.+.+.+ .|+-+..++.++..- .+| ...+.-..-+..-..-.+..+.+++++.++.+.
T Consensus 270 V~-sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~------------ 336 (764)
T KOG1063|consen 270 VY-SVWWHPEGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHGR------------ 336 (764)
T ss_pred eE-EEEEccchhhheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEEecc------------
Q ss_pred ceecCCCEEEEEeCCC----CeEEEeeCCCCCcceEEEecCCCEEEEEeCCCCeEEEEEecCCCCcceeeeeccCCCC
Q 022967 192 LEAKPHGKLLKYDPSL----NETSILLDSLFFANGVALSKDEDYLVVCETFKFRCLKYWLKGESKEQTEIFVENLPGG 265 (289)
Q Consensus 192 ~~~~~~g~i~~~~~~~----~~~~~~~~~~~~p~gl~~~~d~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 265 (289)
.|+.+.+..+. -...........-.+++|+|.|+ .+.+-.-.++-+.|-.-|++....+.......|+
T Consensus 337 -----~Gg~hlWkt~d~~~w~~~~~iSGH~~~V~dv~W~psGe-flLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGy 408 (764)
T KOG1063|consen 337 -----TGGFHLWKTKDKTFWTQEPVISGHVDGVKDVDWDPSGE-FLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGY 408 (764)
T ss_pred -----cCcEEEEeccCccceeeccccccccccceeeeecCCCC-EEEEeccccceeeecccccccceeeecccccccc
No 396
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=27.58 E-value=4.4e+02 Score=25.94 Aligned_cols=172 Identities=17% Similarity=0.224 Sum_probs=0.0
Q ss_pred ceEEEccCCCEE-EEecCCeEEEEe--cCCceEEeeeecCcCccCeEEcCCCcEEEE---eCCCceEEEeCCC-eEEEEe
Q 022967 80 EDVCVDRNGVLY-TATRDGWIKRLH--KNGTWENWKLIGGDTLLGITTTQENEILVC---DADKGLLKVTEEG-VTVLAS 152 (289)
Q Consensus 80 ~~l~~d~~g~l~-v~~~~g~i~~~~--~~g~~~~~~~~~~~p~~gl~~d~~g~l~v~---~~~~~i~~~~~~g-~~~~~~ 152 (289)
++|.++....|. .+..+|.|..|| ....+..+......+. .+.|++-|..... +.+-++|-.-..| ...+..
T Consensus 74 eSl~f~~~E~LlaagsasgtiK~wDleeAk~vrtLtgh~~~~~-sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~s 152 (825)
T KOG0267|consen 74 ESLTFDTSERLLAAGSASGTIKVWDLEEAKIVRTLTGHLLNIT-SVDFHPYGEFFASGSTDTDLKIWDIRKKGCSHTYKS 152 (825)
T ss_pred eeeecCcchhhhcccccCCceeeeehhhhhhhhhhhccccCcc-eeeeccceEEeccccccccceehhhhccCceeeecC
Q ss_pred ccCCccccCccceEEcCCCcEEEeeCCCccCccccccccceecCCCEEEEEeCCCCeEEEeeC-CCCCcceEEEecCCCE
Q 022967 153 HVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLD-SLFFANGVALSKDEDY 231 (289)
Q Consensus 153 ~~~~~~~~~~~~l~~~~dG~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~-~~~~p~gl~~~~d~~~ 231 (289)
... ..+-+.+.|+|++...-+. ...+-.+|...|++..-.. .-..-+.+.++|-.
T Consensus 153 ~~~-----vv~~l~lsP~Gr~v~~g~e-----------------d~tvki~d~~agk~~~ef~~~e~~v~sle~hp~e-- 208 (825)
T KOG0267|consen 153 HTR-----VVDVLRLSPDGRWVASGGE-----------------DNTVKIWDLTAGKLSKEFKSHEGKVQSLEFHPLE-- 208 (825)
T ss_pred Ccc-----eeEEEeecCCCceeeccCC-----------------cceeeeecccccccccccccccccccccccCchh--
Q ss_pred EEEEeCCCCeEEEEEecCCCCcceeeeeccCC--CCCCceeeCCCCCEEEE
Q 022967 232 LVVCETFKFRCLKYWLKGESKEQTEIFVENLP--GGPDNIKLAPDGSFWIA 280 (289)
Q Consensus 232 l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~--~~p~~i~~d~~G~lwv~ 280 (289)
+..+-.+..+..+|+ .+...+......+ ..+.+++++.+|.....
T Consensus 209 ~Lla~Gs~d~tv~f~----dletfe~I~s~~~~~~~v~~~~fn~~~~~~~~ 255 (825)
T KOG0267|consen 209 VLLAPGSSDRTVRFW----DLETFEVISSGKPETDGVRSLAFNPDGKIVLS 255 (825)
T ss_pred hhhccCCCCceeeee----ccceeEEeeccCCccCCceeeeecCCceeeec
No 397
>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A ....
Probab=27.24 E-value=1.3e+02 Score=17.12 Aligned_cols=35 Identities=23% Similarity=0.292 Sum_probs=22.7
Q ss_pred CCCcEEEeeCCCccCccccccccceecCCCEEEEEeCCCCeEEEee
Q 022967 169 TDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILL 214 (289)
Q Consensus 169 ~dG~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~ 214 (289)
-++.||+.-+... .......+++||+++++.+.+.
T Consensus 10 ~~~~iyv~GG~~~-----------~~~~~~~v~~yd~~~~~W~~~~ 44 (47)
T PF01344_consen 10 VGNKIYVIGGYDG-----------NNQPTNSVEVYDPETNTWEELP 44 (47)
T ss_dssp ETTEEEEEEEBES-----------TSSBEEEEEEEETTTTEEEEEE
T ss_pred ECCEEEEEeeecc-----------cCceeeeEEEEeCCCCEEEEcC
Confidence 4678888755311 1223457999999988877653
No 398
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=27.04 E-value=3.1e+02 Score=23.58 Aligned_cols=98 Identities=14% Similarity=0.009 Sum_probs=0.0
Q ss_pred CCcEEEeeCCCccCccccccccceecCCCEEEEEeCCCCe-EEEeeCCCCCcceEEEecCCCEEEEEeCCCC-eEEEEEe
Q 022967 170 DGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNE-TSILLDSLFFANGVALSKDEDYLVVCETFKF-RCLKYWL 247 (289)
Q Consensus 170 dG~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~-~~~~~~~~~~p~gl~~~~d~~~l~v~~~~~~-~i~~~~~ 247 (289)
+|+|.++.+. .|+.++.+..+ +...+.-........+...+++++++|.... .+++|+.
T Consensus 98 ~~~lv~~~g~-------------------~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~~~~I~vgD~~~sv~~~~~~~ 158 (321)
T PF03178_consen 98 NGRLVVAVGN-------------------KLYVYDLDNSKTLLKKAFYDSPFYITSLSVFKNYILVGDAMKSVSLLRYDE 158 (321)
T ss_dssp TTEEEEEETT-------------------EEEEEEEETTSSEEEEEEE-BSSSEEEEEEETTEEEEEESSSSEEEEEEET
T ss_pred CCEEEEeecC-------------------EEEEEEccCcccchhhheecceEEEEEEeccccEEEEEEcccCEEEEEEEc
Q ss_pred cCCCCcceeeeeccCCCCCCceeeCCCCCEEEEEeCcccc
Q 022967 248 KGESKEQTEIFVENLPGGPDNIKLAPDGSFWIAILQVFIS 287 (289)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~p~~i~~d~~G~lwv~~~~g~i~ 287 (289)
++.++.....-........-.+..|.+ .+.+++..|.+.
T Consensus 159 ~~~~l~~va~d~~~~~v~~~~~l~d~~-~~i~~D~~gnl~ 197 (321)
T PF03178_consen 159 ENNKLILVARDYQPRWVTAAEFLVDED-TIIVGDKDGNLF 197 (321)
T ss_dssp TTE-EEEEEEESS-BEEEEEEEE-SSS-EEEEEETTSEEE
T ss_pred cCCEEEEEEecCCCccEEEEEEecCCc-EEEEEcCCCeEE
No 399
>COG3117 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=27.02 E-value=1.6e+02 Score=23.55 Aligned_cols=18 Identities=22% Similarity=0.135 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHhccC
Q 022967 24 GIVLSCLLAFTLQIFFFS 41 (289)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~ 41 (289)
++++++++++++++.+..
T Consensus 9 ~ILll~a~~~~~w~~~~~ 26 (188)
T COG3117 9 LILLLAALALSGWLLGLE 26 (188)
T ss_pred HHHHHHHHHHHHHhhhcc
Confidence 555555566666666544
No 400
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=26.56 E-value=5e+02 Score=23.69 Aligned_cols=53 Identities=19% Similarity=0.221 Sum_probs=34.6
Q ss_pred CCEEEEEeCCCC--eEEEeeC-CCCCcceEEEecCCCEEEEEeCCCCeEEEEEecC
Q 022967 197 HGKLLKYDPSLN--ETSILLD-SLFFANGVALSKDEDYLVVCETFKFRCLKYWLKG 249 (289)
Q Consensus 197 ~g~i~~~~~~~~--~~~~~~~-~~~~p~gl~~~~d~~~l~v~~~~~~~i~~~~~~~ 249 (289)
.+.+...|..++ +...... ...--+.++|+|-+..++.+.+..++|..||+..
T Consensus 249 d~~L~iwD~R~~~~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRn 304 (422)
T KOG0264|consen 249 DGKLMIWDTRSNTSKPSHSVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRN 304 (422)
T ss_pred CCeEEEEEcCCCCCCCcccccccCCceeEEEeCCCCCceEEeccCCCcEEEeechh
Confidence 356777776632 1111111 1233477899998887888877789999999754
No 401
>PRK13717 conjugal transfer protein TrbI; Provisional
Probab=26.48 E-value=1.4e+02 Score=22.19 Aligned_cols=26 Identities=15% Similarity=0.152 Sum_probs=18.3
Q ss_pred CCCCCCCCCCCCCCCcchhhhhhHHH
Q 022967 1 MTPSSNPPPTTGSSSKRCVPVCSGIV 26 (289)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 26 (289)
|+.-+-|+..++.+.++...+..+++
T Consensus 1 ~~~~~k~~~~~~~~~~~~~~~~~~~~ 26 (128)
T PRK13717 1 MTTTQKTTDVTAPRRSHWWWTVPGCL 26 (128)
T ss_pred CCccccCCcccccchhcchHHHHHHH
Confidence 66777788888888877666555444
No 402
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=25.85 E-value=5.8e+02 Score=24.22 Aligned_cols=48 Identities=13% Similarity=0.054 Sum_probs=27.4
Q ss_pred CEEEEEeCCCCeEEEeeCCC-CCcceEEEecCCCEEEEEeCCCCeEEEEEe
Q 022967 198 GKLLKYDPSLNETSILLDSL-FFANGVALSKDEDYLVVCETFKFRCLKYWL 247 (289)
Q Consensus 198 g~i~~~~~~~~~~~~~~~~~-~~p~gl~~~~d~~~l~v~~~~~~~i~~~~~ 247 (289)
|.|-.||.-+.+......++ ....++.++.+|++++.+.- +-|...|+
T Consensus 583 GDirLyDRig~rAKtalP~lG~aIk~idvta~Gk~ilaTCk--~yllL~d~ 631 (776)
T COG5167 583 GDIRLYDRIGKRAKTALPGLGDAIKHIDVTANGKHILATCK--NYLLLTDV 631 (776)
T ss_pred CceeeehhhcchhhhcCcccccceeeeEeecCCcEEEEeec--ceEEEEec
Confidence 55655664433333333333 33467888999998877754 44555554
No 403
>PRK13614 lipoprotein LpqB; Provisional
Probab=25.47 E-value=6.1e+02 Score=24.36 Aligned_cols=92 Identities=9% Similarity=0.053 Sum_probs=48.9
Q ss_pred CcceEEEccCCCEEEEe-cCC-eEEEEecCCceEEeeeecCcCccCeEEcCCCcEEEEeCCC--ceEEEeCCC---eE--
Q 022967 78 GPEDVCVDRNGVLYTAT-RDG-WIKRLHKNGTWENWKLIGGDTLLGITTTQENEILVCDADK--GLLKVTEEG---VT-- 148 (289)
Q Consensus 78 ~p~~l~~d~~g~l~v~~-~~g-~i~~~~~~g~~~~~~~~~~~p~~gl~~d~~g~l~v~~~~~--~i~~~~~~g---~~-- 148 (289)
.+.++++.++|...... .++ .++.....+..+.+.. +..++.-.||.+|.+|.++.+. .++++..+| ..
T Consensus 344 ~~~s~avS~~g~~~A~~~~~~~~l~~~~~g~~~~~~~~--g~~Lt~PS~d~~g~vWtv~~g~~~~vv~~~~~g~~~~~~~ 421 (573)
T PRK13614 344 GPASPAESPVSQTVAFLNGSRTTLYTVSPGQPARALTS--GSTLTRPSFSPQDWVWTAGPGGNGRIVAYRPTGVAEGAQA 421 (573)
T ss_pred cccceeecCCCceEEEecCCCcEEEEecCCCcceeeec--CCCccCCcccCCCCEEEeeCCCCceEEEEecCCCcccccc
Confidence 45567887777776333 333 3433333333333322 2222255588889999988765 677776433 11
Q ss_pred -EEEeccCCccccCccceEEcCCC
Q 022967 149 -VLASHVNGSRINLADDLIAATDG 171 (289)
Q Consensus 149 -~~~~~~~~~~~~~~~~l~~~~dG 171 (289)
+.....+...-.....|.+++||
T Consensus 422 ~~~~v~~~~l~g~~I~~lrvSrDG 445 (573)
T PRK13614 422 PTVTLTADWLAGRTVKELRVSREG 445 (573)
T ss_pred cceeecccccCCCeeEEEEECCCc
Confidence 11111111111236788899998
No 404
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=25.41 E-value=3.9e+02 Score=27.94 Aligned_cols=47 Identities=23% Similarity=0.169 Sum_probs=32.0
Q ss_pred CCEEEEEeCCCCeEEEeeCCCCCcceEEEecCCCEEEEEeCCCCeEEE
Q 022967 197 HGKLLKYDPSLNETSILLDSLFFANGVALSKDEDYLVVCETFKFRCLK 244 (289)
Q Consensus 197 ~g~i~~~~~~~~~~~~~~~~~~~p~gl~~~~d~~~l~v~~~~~~~i~~ 244 (289)
.|.|+.+|+.+...+.+..--.....++|+||++++-+. ++.+.|..
T Consensus 89 ~G~iilvd~et~~~eivg~vd~GI~aaswS~Dee~l~li-T~~~tll~ 135 (1265)
T KOG1920|consen 89 LGDIILVDPETLELEIVGNVDNGISAASWSPDEELLALI-TGRQTLLF 135 (1265)
T ss_pred CCcEEEEcccccceeeeeeccCceEEEeecCCCcEEEEE-eCCcEEEE
Confidence 477888898877776654333444556899999977776 44466654
No 405
>PF07423 DUF1510: Protein of unknown function (DUF1510); InterPro: IPR009988 This family consists of several hypothetical bacterial proteins of around 200 residues in length. The function of this family is unknown.
Probab=25.15 E-value=52 Score=26.98 Aligned_cols=19 Identities=32% Similarity=0.616 Sum_probs=7.8
Q ss_pred hhhHHHHHHHHHHHHHHhc
Q 022967 21 VCSGIVLSCLLAFTLQIFF 39 (289)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~ 39 (289)
++..+++++++.+++.++.
T Consensus 18 iaI~IV~lLIiiva~~lf~ 36 (217)
T PF07423_consen 18 IAIGIVSLLIIIVAYQLFF 36 (217)
T ss_pred HHHHHHHHHHHHHhhhhee
Confidence 3333333444444444444
No 406
>PF14157 YmzC: YmzC-like protein; PDB: 3KVP_E.
Probab=25.01 E-value=1.1e+02 Score=19.57 Aligned_cols=16 Identities=38% Similarity=0.561 Sum_probs=12.9
Q ss_pred CEEEEEeCCCCeEEEe
Q 022967 198 GKLLKYDPSLNETSIL 213 (289)
Q Consensus 198 g~i~~~~~~~~~~~~~ 213 (289)
-.||+||+++++++..
T Consensus 41 iKIfkyd~~tNei~L~ 56 (63)
T PF14157_consen 41 IKIFKYDEDTNEITLK 56 (63)
T ss_dssp EEEEEEETTTTEEEEE
T ss_pred EEEEEeCCCCCeEEEE
Confidence 3699999999887654
No 407
>PF05385 Adeno_E4: Mastadenovirus early E4 13 kDa protein; InterPro: IPR008680 This family consists of Homo sapiens and simian mastadenovirus early E4 13 kDa proteins. Human adenovirus 9 (HAdV-9) is unique in eliciting exclusively estrogen-dependent mammary tumours in Rattus spp. and in not requiring viral E1 region transforming genes for tumorigenicity. E4 codes for an oncoprotein essential for tumourigenesis by Ad9 [].
Probab=24.63 E-value=1.5e+02 Score=21.17 Aligned_cols=30 Identities=20% Similarity=0.330 Sum_probs=22.3
Q ss_pred CCCCCCCCCCCCCCCcchhhhhhHHHHHHH
Q 022967 1 MTPSSNPPPTTGSSSKRCVPVCSGIVLSCL 30 (289)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 30 (289)
|.=|+.|||+..+-...|+-++-+...+++
T Consensus 1 M~LP~LPpPPv~rd~~~Ci~WLglA~at~~ 30 (109)
T PF05385_consen 1 MPLPSLPPPPVCRDQSACIAWLGLAYATVV 30 (109)
T ss_pred CCCCCCCCCCCcCCHHHHHHHHHHHHHHHH
Confidence 777999999998888888766655444444
No 408
>PF15533 Toxin_54: Putative toxin 54
Probab=24.10 E-value=62 Score=20.81 Aligned_cols=15 Identities=13% Similarity=0.293 Sum_probs=12.2
Q ss_pred CceeeCCCCCEEEEE
Q 022967 267 DNIKLAPDGSFWIAI 281 (289)
Q Consensus 267 ~~i~~d~~G~lwv~~ 281 (289)
..|..|.+|++|+=-
T Consensus 37 yDlykD~~gni~ik~ 51 (66)
T PF15533_consen 37 YDLYKDREGNIYIKP 51 (66)
T ss_pred ceeEEcCCCCEEEec
Confidence 458899999999854
No 409
>PHA03283 envelope glycoprotein E; Provisional
Probab=23.96 E-value=1.2e+02 Score=28.30 Aligned_cols=25 Identities=8% Similarity=0.203 Sum_probs=10.3
Q ss_pred chhhhhhHHHHHHHHHHHHHHhccC
Q 022967 17 RCVPVCSGIVLSCLLAFTLQIFFFS 41 (289)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~ 41 (289)
+++.++..++.++.+++.+++.+++
T Consensus 398 ~~l~~~~~~~~~~~~~~~~l~vw~c 422 (542)
T PHA03283 398 HYLAFLLAIICTCAALLVALVVWGC 422 (542)
T ss_pred ccchhHHHHHHHHHHHHHHHhhhhe
Confidence 3443444433333344444444443
No 410
>PLN02153 epithiospecifier protein
Probab=23.91 E-value=4.8e+02 Score=22.65 Aligned_cols=155 Identities=14% Similarity=0.090 Sum_probs=71.3
Q ss_pred CCCEEE-Eec-------CCeEEEEec-CCceEEeeeecCcCc---cC--eEEcCCCcEEEEeCC------CceEEEe-CC
Q 022967 87 NGVLYT-ATR-------DGWIKRLHK-NGTWENWKLIGGDTL---LG--ITTTQENEILVCDAD------KGLLKVT-EE 145 (289)
Q Consensus 87 ~g~l~v-~~~-------~g~i~~~~~-~g~~~~~~~~~~~p~---~g--l~~d~~g~l~v~~~~------~~i~~~~-~~ 145 (289)
++.||+ +-. ...++++|. ..++.........|. .+ ++. -++.||+.... +.++++| .+
T Consensus 32 ~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~p~~~~~~~~~~~-~~~~iyv~GG~~~~~~~~~v~~yd~~t 110 (341)
T PLN02153 32 GDKLYSFGGELKPNEHIDKDLYVFDFNTHTWSIAPANGDVPRISCLGVRMVA-VGTKLYIFGGRDEKREFSDFYSYDTVK 110 (341)
T ss_pred CCEEEEECCccCCCCceeCcEEEEECCCCEEEEcCccCCCCCCccCceEEEE-ECCEEEEECCCCCCCccCcEEEEECCC
Confidence 567885 321 135778883 444554322111111 02 222 25678886321 2478888 44
Q ss_pred C-eEEEEec-cCCccccCccceEEcCCCcEEEeeCCCccCccccccccceecCCCEEEEEeCCCCeEEEeeCCCC--Cc-
Q 022967 146 G-VTVLASH-VNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLF--FA- 220 (289)
Q Consensus 146 g-~~~~~~~-~~~~~~~~~~~l~~~~dG~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~--~p- 220 (289)
. .+.+... ....+......-++.-++.||+.-+....+... .......++.||+++.+.+.+..... .+
T Consensus 111 ~~W~~~~~~~~~~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~------~~~~~~~v~~yd~~~~~W~~l~~~~~~~~~r 184 (341)
T PLN02153 111 NEWTFLTKLDEEGGPEARTFHSMASDENHVYVFGGVSKGGLMK------TPERFRTIEAYNIADGKWVQLPDPGENFEKR 184 (341)
T ss_pred CEEEEeccCCCCCCCCCceeeEEEEECCEEEEECCccCCCccC------CCcccceEEEEECCCCeEeeCCCCCCCCCCC
Confidence 5 5444321 011111111122233467899875431110000 00012358899999888876543211 11
Q ss_pred --ceEEEecCCCEEEEEeC-------------CCCeEEEEEecCC
Q 022967 221 --NGVALSKDEDYLVVCET-------------FKFRCLKYWLKGE 250 (289)
Q Consensus 221 --~gl~~~~d~~~l~v~~~-------------~~~~i~~~~~~~~ 250 (289)
.+++. -+++ +|+.-. ..+.+++||+...
T Consensus 185 ~~~~~~~-~~~~-iyv~GG~~~~~~~gG~~~~~~~~v~~yd~~~~ 227 (341)
T PLN02153 185 GGAGFAV-VQGK-IWVVYGFATSILPGGKSDYESNAVQFFDPASG 227 (341)
T ss_pred CcceEEE-ECCe-EEEEeccccccccCCccceecCceEEEEcCCC
Confidence 12332 2444 777421 1256888987654
No 411
>PLN02193 nitrile-specifier protein
Probab=23.85 E-value=5.8e+02 Score=23.56 Aligned_cols=109 Identities=11% Similarity=0.046 Sum_probs=55.5
Q ss_pred CCcEEEEeCC------CceEEEe-CCC-eEEEEeccCCccccCccceEEcCCCcEEEeeCCCccCccccccccceecCCC
Q 022967 127 ENEILVCDAD------KGLLKVT-EEG-VTVLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHG 198 (289)
Q Consensus 127 ~g~l~v~~~~------~~i~~~~-~~g-~~~~~~~~~~~~~~~~~~l~~~~dG~lyv~~~~~~~~~~~~~~~~~~~~~~g 198 (289)
++.||+.... +.++++| ... .+.+........-+....+++ -++.||+.-+... .....
T Consensus 228 ~~~lYvfGG~~~~~~~ndv~~yD~~t~~W~~l~~~~~~P~~R~~h~~~~-~~~~iYv~GG~~~------------~~~~~ 294 (470)
T PLN02193 228 GSTLYVFGGRDASRQYNGFYSFDTTTNEWKLLTPVEEGPTPRSFHSMAA-DEENVYVFGGVSA------------TARLK 294 (470)
T ss_pred CCEEEEECCCCCCCCCccEEEEECCCCEEEEcCcCCCCCCCccceEEEE-ECCEEEEECCCCC------------CCCcc
Confidence 5688886321 3588888 555 554432111111111122332 4678998754310 01124
Q ss_pred EEEEEeCCCCeEEEeeCC--C---CCcceEEEecCCCEEEEEeCC----CCeEEEEEecCC
Q 022967 199 KLLKYDPSLNETSILLDS--L---FFANGVALSKDEDYLVVCETF----KFRCLKYWLKGE 250 (289)
Q Consensus 199 ~i~~~~~~~~~~~~~~~~--~---~~p~gl~~~~d~~~l~v~~~~----~~~i~~~~~~~~ 250 (289)
.+++||+.+.+.+.+... . +.-.+++. -+++ +|+.-.. .+.+++||++..
T Consensus 295 ~~~~yd~~t~~W~~~~~~~~~~~~R~~~~~~~-~~gk-iyviGG~~g~~~~dv~~yD~~t~ 353 (470)
T PLN02193 295 TLDSYNIVDKKWFHCSTPGDSFSIRGGAGLEV-VQGK-VWVVYGFNGCEVDDVHYYDPVQD 353 (470)
T ss_pred eEEEEECCCCEEEeCCCCCCCCCCCCCcEEEE-ECCc-EEEEECCCCCccCceEEEECCCC
Confidence 588999988887765431 1 11122232 2455 7765321 256889988754
No 412
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=23.78 E-value=4.9e+02 Score=22.62 Aligned_cols=17 Identities=41% Similarity=0.495 Sum_probs=14.0
Q ss_pred CEEEEEeCCCCeEEEee
Q 022967 198 GKLLKYDPSLNETSILL 214 (289)
Q Consensus 198 g~i~~~~~~~~~~~~~~ 214 (289)
..+.+||+.+++.+.+.
T Consensus 168 ~~v~~YDp~t~~W~~~~ 184 (346)
T TIGR03547 168 KNVLSYDPSTNQWRNLG 184 (346)
T ss_pred ceEEEEECCCCceeECc
Confidence 56999999988887764
No 413
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=23.48 E-value=7.8e+02 Score=24.87 Aligned_cols=53 Identities=23% Similarity=0.256 Sum_probs=30.9
Q ss_pred CCEEEEEeCC----CCeEEEe-eCCCCCcceEEEecCCCE-EEEEeCCCCeEEEEEecCCC
Q 022967 197 HGKLLKYDPS----LNETSIL-LDSLFFANGVALSKDEDY-LVVCETFKFRCLKYWLKGES 251 (289)
Q Consensus 197 ~g~i~~~~~~----~~~~~~~-~~~~~~p~gl~~~~d~~~-l~v~~~~~~~i~~~~~~~~~ 251 (289)
+|.|+++..+ .+....+ ..+-.-..|+++..|++. ++|+.+ .+|..|.+.|++
T Consensus 146 nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d~~s~lFv~Tt--~~V~~y~l~gr~ 204 (933)
T KOG2114|consen 146 NGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSDGKSVLFVATT--EQVMLYSLSGRT 204 (933)
T ss_pred CcEEEEEcCcchhccccceeeeccCCCCceeeEEecCCceeEEEEec--ceeEEEEecCCC
Confidence 4667766533 1111222 233344578999888887 566644 667777777654
No 414
>PF05567 Neisseria_PilC: Neisseria PilC beta-propeller domain; InterPro: IPR008707 This domain is found in several PilC protein sequences from Neisseria gonorrhoeae and Neisseria meningitidis. PilC is a phase-variable protein associated with pilus-mediated adherence of pathogenic Neisseria to target cells [].; PDB: 3HX6_A.
Probab=23.29 E-value=1.7e+02 Score=25.81 Aligned_cols=52 Identities=17% Similarity=0.296 Sum_probs=25.4
Q ss_pred ceEEEe-CC-C--eEEEEeccCCccccCccceEEcCCC---cEEEeeCCCccCccccccccceecCCCEEEEEeCCC
Q 022967 138 GLLKVT-EE-G--VTVLASHVNGSRINLADDLIAATDG---SIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSL 207 (289)
Q Consensus 138 ~i~~~~-~~-g--~~~~~~~~~~~~~~~~~~l~~~~dG---~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~ 207 (289)
.|+.+| .+ | +..+........+..+.-+..+.|| .+|++|.. |.|||+|..+
T Consensus 182 ~lyi~d~~t~G~l~~~i~~~~~~~gl~~~~~~D~d~DG~~D~vYaGDl~------------------GnlwR~dl~~ 240 (335)
T PF05567_consen 182 ALYILDADTTGALIKKIDVPGGSGGLSSPAVVDSDGDGYVDRVYAGDLG------------------GNLWRFDLSS 240 (335)
T ss_dssp EEEEEETTT---EEEEEEE--STT-EEEEEEE-TTSSSEE-EEEEEETT------------------SEEEEEE--T
T ss_pred EEEEEECCCCCceEEEEecCCCCccccccEEEeccCCCeEEEEEEEcCC------------------CcEEEEECCC
Confidence 478888 66 7 4443221111122233223334566 37888753 8999999763
No 415
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=23.14 E-value=7.5e+02 Score=24.59 Aligned_cols=73 Identities=16% Similarity=0.260 Sum_probs=42.7
Q ss_pred eccCCcCCcceEEEccCC--CEEEEecCCeEEEEecCCceE-EeeeecCcCccCeEEcCCCcEEEEeCCCceEEEeCCC
Q 022967 71 LGEGILNGPEDVCVDRNG--VLYTATRDGWIKRLHKNGTWE-NWKLIGGDTLLGITTTQENEILVCDADKGLLKVTEEG 146 (289)
Q Consensus 71 ~~~~~~~~p~~l~~d~~g--~l~v~~~~g~i~~~~~~g~~~-~~~~~~~~p~~gl~~d~~g~l~v~~~~~~i~~~~~~g 146 (289)
+.-.++.+|-.+..++.. .+| ...-.|..++..|..- ......+.++ +|.++.+..|.+......+++++-.|
T Consensus 38 fa~Ap~gGpIAV~r~p~~~~~~~--~a~~~I~If~~sG~lL~~~~w~~~~lI-~mgWs~~eeLI~v~k~g~v~Vy~~~g 113 (829)
T KOG2280|consen 38 FACAPFGGPIAVTRSPSKLVPLY--SARPYIRIFNISGQLLGRILWKHGELI-GMGWSDDEELICVQKDGTVHVYGLLG 113 (829)
T ss_pred EEecccCCceEEEeccccccccc--ccceeEEEEeccccchHHHHhcCCCee-eecccCCceEEEEeccceEEEeecch
Confidence 333446777777776632 233 2333466666666432 1122234778 99998888887777556677777434
No 416
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=22.84 E-value=5.1e+02 Score=22.50 Aligned_cols=17 Identities=29% Similarity=0.429 Sum_probs=13.9
Q ss_pred CEEEEEeCCCCeEEEee
Q 022967 198 GKLLKYDPSLNETSILL 214 (289)
Q Consensus 198 g~i~~~~~~~~~~~~~~ 214 (289)
..+++||+.+++.+.+.
T Consensus 85 ~~v~~Yd~~~~~W~~~~ 101 (346)
T TIGR03547 85 DDVYRYDPKKNSWQKLD 101 (346)
T ss_pred ccEEEEECCCCEEecCC
Confidence 46899999988887765
No 417
>PRK12690 flgF flagellar basal body rod protein FlgF; Reviewed
Probab=22.73 E-value=4.5e+02 Score=21.87 Aligned_cols=12 Identities=17% Similarity=0.393 Sum_probs=9.9
Q ss_pred ceEEcCCCcEEE
Q 022967 164 DLIAATDGSIYF 175 (289)
Q Consensus 164 ~l~~~~dG~lyv 175 (289)
.+.+++||.|+.
T Consensus 137 ~~~I~~dG~i~~ 148 (238)
T PRK12690 137 SVAVGADGTLSA 148 (238)
T ss_pred eEEECCCCeEEE
Confidence 688999999865
No 418
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=22.69 E-value=3.5e+02 Score=25.15 Aligned_cols=32 Identities=19% Similarity=0.117 Sum_probs=22.1
Q ss_pred CCCcceEEEecCCCEEEEEeCCCCeEEEEEecCC
Q 022967 217 LFFANGVALSKDEDYLVVCETFKFRCLKYWLKGE 250 (289)
Q Consensus 217 ~~~p~gl~~~~d~~~l~v~~~~~~~i~~~~~~~~ 250 (289)
...|.-++++|.+++|.+-+. .++.++.++.+
T Consensus 357 ~~~~~~~~~Sp~~~~Ll~e~~--gki~~~~l~Nr 388 (733)
T COG4590 357 YQAPQLVAMSPNQAYLLSEDQ--GKIRLAQLENR 388 (733)
T ss_pred hcCcceeeeCcccchheeecC--CceEEEEecCC
Confidence 345677889998887776644 56777766653
No 419
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=22.64 E-value=5.5e+02 Score=22.79 Aligned_cols=59 Identities=15% Similarity=0.269 Sum_probs=37.4
Q ss_pred CCCCCcceEEEecCCCEEEEEeCCCCeEEEEEecCCCCcceeeeeccCCCCCCceeeCCCCCE
Q 022967 215 DSLFFANGVALSKDEDYLVVCETFKFRCLKYWLKGESKEQTEIFVENLPGGPDNIKLAPDGSF 277 (289)
Q Consensus 215 ~~~~~p~gl~~~~d~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l 277 (289)
.+...-..+.|+|||+++..+....-||.++.+.+.+- .++.-......++++.+||.+
T Consensus 89 eg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~----~~~~~pK~~~kg~~f~~dg~f 147 (447)
T KOG4497|consen 89 EGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKG----YLLPHPKTNVKGYAFHPDGQF 147 (447)
T ss_pred cCCCcceeeeECCCcceEeeeecceeEEEEEEecccee----EEecccccCceeEEECCCCce
Confidence 34444566789999998888877778888887764321 122111122356778888764
No 420
>TIGR02171 Fb_sc_TIGR02171 Fibrobacter succinogenes paralogous family TIGR02171. This model describes a paralogous family of the rumen bacterium Fibrobacter succinogenes. Eleven members are found in Fibrobacter succinogenes S85, averaging over 900 amino acids in length. More than half are predicted lipoproteins. The function is unknown.
Probab=22.63 E-value=8.3e+02 Score=24.92 Aligned_cols=127 Identities=7% Similarity=-0.006 Sum_probs=0.0
Q ss_pred EEEEeCCCceEEEeCCC-eEEEEeccCCccccCccceEEcCCC-cEEEeeCCCccCcccccccccee-cCCCEEEEEeCC
Q 022967 130 ILVCDADKGLLKVTEEG-VTVLASHVNGSRINLADDLIAATDG-SIYFSVASTKFGLHNWGLDLLEA-KPHGKLLKYDPS 206 (289)
Q Consensus 130 l~v~~~~~~i~~~~~~g-~~~~~~~~~~~~~~~~~~l~~~~dG-~lyv~~~~~~~~~~~~~~~~~~~-~~~g~i~~~~~~ 206 (289)
.||.+....|...|-+| -...+......+..+| .++||| .|-++... |. .+...||+.+.+
T Consensus 322 Afv~~~~~~L~~~D~dG~n~~~ve~~~~~~i~sP---~~SPDG~~vAY~ts~-------------e~~~g~s~vYv~~L~ 385 (912)
T TIGR02171 322 AFRNDVTGNLAYIDYTKGASRAVEIEDTISVYHP---DISPDGKKVAFCTGI-------------EGLPGKSSVYVRNLN 385 (912)
T ss_pred EEEEcCCCeEEEEecCCCCceEEEecCCCceecC---cCCCCCCEEEEEEee-------------cCCCCCceEEEEehh
Q ss_pred CCeEEEeeCCCCCcceEEEec----CCCEEEEEeCCCCe---------EEEEEecCCCCcceeeeeccCCCCCCceeeCC
Q 022967 207 LNETSILLDSLFFANGVALSK----DEDYLVVCETFKFR---------CLKYWLKGESKEQTEIFVENLPGGPDNIKLAP 273 (289)
Q Consensus 207 ~~~~~~~~~~~~~p~gl~~~~----d~~~l~v~~~~~~~---------i~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~ 273 (289)
+.....+.-...+..-=.|.- |.-.+||++.+++. -+..-+...++++.+.++++ .+-.|+..|.
T Consensus 386 t~~~~~vkl~ve~aaiprwrv~e~gdt~ivyv~~a~nn~d~~~~~~~stw~v~f~~gkfg~p~kl~dg--a~hggvs~~~ 463 (912)
T TIGR02171 386 ASGSGLVKLPVENAAIPRWRVLENGDTVIVYVSDASNNKDDATFAAYSTWQVPFANGKFGTPKKLFDG--AYHGGVSEDL 463 (912)
T ss_pred ccCCCceEeecccccccceEecCCCCeEEEEEcCCCCCcchhhhhhcceEEEEecCCCCCCchhhhcc--ccccccccCC
Q ss_pred C
Q 022967 274 D 274 (289)
Q Consensus 274 ~ 274 (289)
.
T Consensus 464 ~ 464 (912)
T TIGR02171 464 N 464 (912)
T ss_pred c
No 421
>TIGR03726 strep_RK_lipo putative cross-wall-targeting lipoprotein signal. The YSIRK signal domain targets proteins to the cross-wall, or septum, of dividing Gram-positive bacterial. Lipoprotein signal motifs direct a characteristic N-terminal cleavage and lipid modification for membrane anchoring. This Streptococcal-only signal peptide variant appears to be a hybrid between the two, likely directing protein targeting of nascent surface lipoproteins to the cross-wall. Nearly all members of this family have the characteristic LPXTG cell wall anchor signal at the C-terminus.
Probab=22.39 E-value=82 Score=17.39 Aligned_cols=18 Identities=17% Similarity=0.375 Sum_probs=9.9
Q ss_pred CCCcchhhhhhHHHHHHH
Q 022967 13 SSSKRCVPVCSGIVLSCL 30 (289)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~ 30 (289)
|.||+|+.++-.++..++
T Consensus 4 RKsK~~~tLCGa~Lgt~~ 21 (34)
T TIGR03726 4 RKSKKYRTLCGAALGTAV 21 (34)
T ss_pred hhhHHHHHHHHHHHHHHH
Confidence 345557766665555433
No 422
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=22.25 E-value=7.2e+02 Score=24.02 Aligned_cols=64 Identities=13% Similarity=0.121 Sum_probs=44.0
Q ss_pred eCCCCCcceEEEecCCCEEEEEeCCCCeEEEEEecCCCCcceeeeeccCCCCCCceeeCCCCCE
Q 022967 214 LDSLFFANGVALSKDEDYLVVCETFKFRCLKYWLKGESKEQTEIFVENLPGGPDNIKLAPDGSF 277 (289)
Q Consensus 214 ~~~~~~p~gl~~~~d~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l 277 (289)
..|.--|.-|||++....+-|+...-+.|.+|-+....+.+.+...-.-...|-||.+=.|..+
T Consensus 335 IPGILvPDliAfn~kaq~VAVASNTcn~ilVYSv~~s~mPniQqIqLe~~ERPKGiCFltdklL 398 (671)
T PF15390_consen 335 IPGILVPDLIAFNPKAQVVAVASNTCNIILVYSVTPSSMPNIQQIQLESNERPKGICFLTDKLL 398 (671)
T ss_pred cccccccceeeeCCcCCEEEEEecCCcEEEEEEeccccCCCeeEEEcccCCCCceeeEccCCeE
Confidence 4566778889999999988888777788999988654444433221122256888887666644
No 423
>PHA03405 hypothetical protein; Provisional
Probab=22.20 E-value=56 Score=23.28 Aligned_cols=12 Identities=25% Similarity=0.506 Sum_probs=9.6
Q ss_pred CCCCCCCCCCCC
Q 022967 1 MTPSSNPPPTTG 12 (289)
Q Consensus 1 ~~~~~~~~~~~~ 12 (289)
.|||++||+++-
T Consensus 26 I~PPsIpp~Psy 37 (130)
T PHA03405 26 IQPPNISTPPTT 37 (130)
T ss_pred CCCCCCCCCCCc
Confidence 479999998764
No 424
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=22.01 E-value=5.6e+02 Score=22.71 Aligned_cols=18 Identities=33% Similarity=0.429 Sum_probs=14.1
Q ss_pred CEEEEEeCCCCeEEEeeC
Q 022967 198 GKLLKYDPSLNETSILLD 215 (289)
Q Consensus 198 g~i~~~~~~~~~~~~~~~ 215 (289)
..+++||+.+++.+.+..
T Consensus 106 ~~v~~YD~~~n~W~~~~~ 123 (376)
T PRK14131 106 DDVYKYDPKTNSWQKLDT 123 (376)
T ss_pred ccEEEEeCCCCEEEeCCC
Confidence 468999998888877653
No 425
>PF14779 BBS1: Ciliary BBSome complex subunit 1
Probab=21.82 E-value=3.2e+02 Score=23.13 Aligned_cols=54 Identities=17% Similarity=0.095 Sum_probs=30.4
Q ss_pred CCEEEEecCCeEEEEecCCc-eEEeeeecCcCccCeE----Ec-CCCcEEEEeCCCceEEE
Q 022967 88 GVLYTATRDGWIKRLHKNGT-WENWKLIGGDTLLGIT----TT-QENEILVCDADKGLLKV 142 (289)
Q Consensus 88 g~l~v~~~~g~i~~~~~~g~-~~~~~~~~~~p~~gl~----~d-~~g~l~v~~~~~~i~~~ 142 (289)
.-|.+|+.++.|+.+|+.+. +..-...++.|. -|. +| -|.+|.|+.+++.|+.+
T Consensus 196 scLViGTE~~~i~iLd~~af~il~~~~lpsvPv-~i~~~G~~devdyRI~Va~Rdg~iy~i 255 (257)
T PF14779_consen 196 SCLVIGTESGEIYILDPQAFTILKQVQLPSVPV-FISVSGQYDEVDYRIVVACRDGKIYTI 255 (257)
T ss_pred ceEEEEecCCeEEEECchhheeEEEEecCCCce-EEEEEeeeeccceEEEEEeCCCEEEEE
Confidence 35778888888888885542 221122233333 222 33 56678887766656544
No 426
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=21.65 E-value=7.1e+02 Score=23.73 Aligned_cols=13 Identities=15% Similarity=0.079 Sum_probs=7.7
Q ss_pred EEEecCCCEEEEE
Q 022967 223 VALSKDEDYLVVC 235 (289)
Q Consensus 223 l~~~~d~~~l~v~ 235 (289)
++|++||..+-++
T Consensus 262 lsWS~DGTQ~a~g 274 (737)
T KOG1524|consen 262 LSWSADGTQATCG 274 (737)
T ss_pred EEEcCCCceeecc
Confidence 5666666655444
No 427
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=21.30 E-value=5.3e+02 Score=22.13 Aligned_cols=57 Identities=11% Similarity=0.194 Sum_probs=32.0
Q ss_pred eEEcCCCcEEEEeCCCceEEEe--CCCe-EEEEe-ccCCccccCccceEEcCCCcEEEeeCC
Q 022967 122 ITTTQENEILVCDADKGLLKVT--EEGV-TVLAS-HVNGSRINLADDLIAATDGSIYFSVAS 179 (289)
Q Consensus 122 l~~d~~g~l~v~~~~~~i~~~~--~~g~-~~~~~-~~~~~~~~~~~~l~~~~dG~lyv~~~~ 179 (289)
++...+|++...--+. ++.+- .|.+ ..+.. ..+..+...-+-+++.||+.+.....+
T Consensus 3 ~~~~~~Gk~lAi~qd~-~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~tlLa~a~S 63 (282)
T PF15492_consen 3 LALSSDGKLLAILQDQ-CIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDCTLLAYAES 63 (282)
T ss_pred eeecCCCcEEEEEecc-EEEEEeccCCchheeEEEecCCCCCchheEEEECCCCcEEEEEcC
Confidence 5666788876655334 44443 4442 22221 233344445678999999987665443
No 428
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=21.13 E-value=7.3e+02 Score=23.71 Aligned_cols=112 Identities=10% Similarity=0.005 Sum_probs=57.5
Q ss_pred CcCccCeEEcCCCcEEEEeCC-CceEEEeCCC---eEEEEeccCCccccCccceEEcC--CCcEEEeeCCCccCcccccc
Q 022967 116 GDTLLGITTTQENEILVCDAD-KGLLKVTEEG---VTVLASHVNGSRINLADDLIAAT--DGSIYFSVASTKFGLHNWGL 189 (289)
Q Consensus 116 ~~p~~gl~~d~~g~l~v~~~~-~~i~~~~~~g---~~~~~~~~~~~~~~~~~~l~~~~--dG~lyv~~~~~~~~~~~~~~ 189 (289)
|=.+ .|++..+|.++++..+ .++..+|... +..+..... .....+.+-| +.++.++...
T Consensus 51 GCVN-~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHt----aNIFsvKFvP~tnnriv~sgAg---------- 115 (758)
T KOG1310|consen 51 GCVN-CLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHT----ANIFSVKFVPYTNNRIVLSGAG---------- 115 (758)
T ss_pred ceec-ceeecCCCCEEeecCCcceEEeecchhcceeeeeecccc----cceeEEeeeccCCCeEEEeccC----------
Confidence 3345 8999999999887544 5677777322 222211111 1122444444 2345555322
Q ss_pred ccceecCCCEEEEEeCCCCeEEEe-----------eCCCCCcceEEEecCCCEEEEEeCCCCeEEEEEecC
Q 022967 190 DLLEAKPHGKLLKYDPSLNETSIL-----------LDSLFFANGVALSKDEDYLVVCETFKFRCLKYWLKG 249 (289)
Q Consensus 190 ~~~~~~~~g~i~~~~~~~~~~~~~-----------~~~~~~p~gl~~~~d~~~l~v~~~~~~~i~~~~~~~ 249 (289)
...|..+|.+..+-... .-.......|+.-|++-..+|+....+.|..||+..
T Consensus 116 -------Dk~i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiRE 179 (758)
T KOG1310|consen 116 -------DKLIKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIRE 179 (758)
T ss_pred -------cceEEEEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccC
Confidence 23455566542110000 011222344666777734555556778999999864
No 429
>KOG4328 consensus WD40 protein [Function unknown]
Probab=21.08 E-value=6.7e+02 Score=23.21 Aligned_cols=150 Identities=10% Similarity=-0.011 Sum_probs=70.4
Q ss_pred cceEEEccCCCEE--EEecCCeEEEEe---cCCceEEeee--ecCcCccCeEEcCCC-cEEEEeCCCceEEEeCC---C-
Q 022967 79 PEDVCVDRNGVLY--TATRDGWIKRLH---KNGTWENWKL--IGGDTLLGITTTQEN-EILVCDADKGLLKVTEE---G- 146 (289)
Q Consensus 79 p~~l~~d~~g~l~--v~~~~g~i~~~~---~~g~~~~~~~--~~~~p~~gl~~d~~g-~l~v~~~~~~i~~~~~~---g- 146 (289)
-.+|++.|-..-| ++.-++....|| -.++...+.. ...++++...|.+.| +|..+..++.|..+|.. .
T Consensus 325 I~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa~ 404 (498)
T KOG4328|consen 325 ITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSSCISAK 404 (498)
T ss_pred cceeecCCCCchheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeeccCCceEEeeccccccc
Confidence 4456676633322 333455555565 1233221111 112333266677654 65555544667777632 1
Q ss_pred ---eEEEEeccCCccccCccceEEcCCCcE-EEeeCCCccCccccccccceecCCCEEEEEeCCCCeE-EEeeC-CC-CC
Q 022967 147 ---VTVLASHVNGSRINLADDLIAATDGSI-YFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNET-SILLD-SL-FF 219 (289)
Q Consensus 147 ---~~~~~~~~~~~~~~~~~~l~~~~dG~l-yv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~-~~~~~-~~-~~ 219 (289)
...+.....-.+.-.+.--+++||-++ +++... -.|=.||+.+++. -.+.+ .. .-
T Consensus 405 ~~p~~~I~Hn~~t~RwlT~fKA~W~P~~~li~vg~~~------------------r~IDv~~~~~~q~v~el~~P~~~tI 466 (498)
T KOG4328|consen 405 DEPLGTIPHNNRTGRWLTPFKAAWDPDYNLIVVGRYP------------------RPIDVFDGNGGQMVCELHDPESSTI 466 (498)
T ss_pred CCccceeeccCcccccccchhheeCCCccEEEEeccC------------------cceeEEcCCCCEEeeeccCcccccc
Confidence 222222222122233445578887654 444322 2367778776662 12211 11 23
Q ss_pred cceEEEecCCCEEEEEeCCCCeEEEEE
Q 022967 220 ANGVALSKDEDYLVVCETFKFRCLKYW 246 (289)
Q Consensus 220 p~gl~~~~d~~~l~v~~~~~~~i~~~~ 246 (289)
|.-..++|-+..+..+....+.|++|.
T Consensus 467 ~~vn~~HP~~~~~~aG~~s~Gki~vft 493 (498)
T KOG4328|consen 467 PSVNEFHPMRDTLAAGGNSSGKIYVFT 493 (498)
T ss_pred ccceeecccccceeccCCccceEEEEe
Confidence 444578886664444434445666654
No 430
>PF12275 DUF3616: Protein of unknown function (DUF3616); InterPro: IPR022060 This family of proteins is found in bacteria. Proteins in this family are typically between 335 and 392 amino acids in length. There is a conserved GLRGPV sequence motif.
Probab=21.08 E-value=3.1e+02 Score=24.17 Aligned_cols=62 Identities=16% Similarity=0.200 Sum_probs=30.7
Q ss_pred ceEEEecCCCEEEEEeCCCCeEEEEEecCCC----Ccceeeee--c--cCCCC------CCceeeCCCCCEEEEEeCc
Q 022967 221 NGVALSKDEDYLVVCETFKFRCLKYWLKGES----KEQTEIFV--E--NLPGG------PDNIKLAPDGSFWIAILQV 284 (289)
Q Consensus 221 ~gl~~~~d~~~l~v~~~~~~~i~~~~~~~~~----~~~~~~~~--~--~~~~~------p~~i~~d~~G~lwv~~~~g 284 (289)
.+++..+++. |||+......+.|+...... ......|. + .++.. -.+++. .+|+||+.+..+
T Consensus 3 Sa~~~~~d~~-l~va~DE~~~i~rL~~~~~~~~~~~~~~~~~~l~~~~~lp~~~~~e~DiEGla~-~~gyly~igSHS 78 (330)
T PF12275_consen 3 SAAVQLPDGR-LWVASDETANIERLTLDDAGGEDRFGDHASFPLADFFDLPGPKDKEIDIEGLAY-ADGYLYVIGSHS 78 (330)
T ss_pred ccceEcCCCe-EEEEecCCCCeeEEEecCCCcccccccccccccccccccCCCCCcccchhhhhc-cCCeEEEEccCc
Confidence 4455566665 77776655556554433221 11111111 0 11111 234777 568999887654
No 431
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=20.90 E-value=5.4e+02 Score=22.12 Aligned_cols=52 Identities=19% Similarity=0.218 Sum_probs=31.8
Q ss_pred CCEEEEEeCCCCeEEEeeCCCCCcceEEEecCCCEEEEEeCCCCeEEEEEecCC
Q 022967 197 HGKLLKYDPSLNETSILLDSLFFANGVALSKDEDYLVVCETFKFRCLKYWLKGE 250 (289)
Q Consensus 197 ~g~i~~~~~~~~~~~~~~~~~~~p~gl~~~~d~~~l~v~~~~~~~i~~~~~~~~ 250 (289)
++.++.++.+..+.......+ .-+.+++++|++++-+.. ..++|.+|.++.+
T Consensus 139 t~k~~~~~~~s~~~~~h~~~~-~~ns~~~snd~~~~~~Vg-ds~~Vf~y~id~~ 190 (344)
T KOG4532|consen 139 TGKTMVVSGDSNKFAVHNQNL-TQNSLHYSNDPSWGSSVG-DSRRVFRYAIDDE 190 (344)
T ss_pred ceeEEEEecCcccceeecccc-ceeeeEEcCCCceEEEec-CCCcceEEEeCCc
Confidence 355666655433332222222 257889999999766653 4588999988754
No 432
>PHA02975 hypothetical protein; Provisional
Probab=20.65 E-value=2.1e+02 Score=18.63 Aligned_cols=17 Identities=24% Similarity=0.325 Sum_probs=7.0
Q ss_pred CCCcchhhhhhHHHHHH
Q 022967 13 SSSKRCVPVCSGIVLSC 29 (289)
Q Consensus 13 ~~~~~~~~~~~~~~~~~ 29 (289)
+++.++..+..++++++
T Consensus 40 ~~~~~~~~ii~i~~v~~ 56 (69)
T PHA02975 40 KSSLSIILIIFIIFITC 56 (69)
T ss_pred CCchHHHHHHHHHHHHH
Confidence 44444444444333333
No 433
>PF13088 BNR_2: BNR repeat-like domain; PDB: 2F11_A 2F0Z_A 1VCU_B 2F25_B 1SO7_A 2F29_A 1SNT_A 2F13_A 2F28_A 2F27_A ....
Probab=20.53 E-value=4.9e+02 Score=21.49 Aligned_cols=13 Identities=31% Similarity=0.639 Sum_probs=10.3
Q ss_pred cceEEcCCCcEEE
Q 022967 163 DDLIAATDGSIYF 175 (289)
Q Consensus 163 ~~l~~~~dG~lyv 175 (289)
..++..+||.|||
T Consensus 263 ~~~~~~~dg~l~i 275 (275)
T PF13088_consen 263 PSLTQLPDGKLYI 275 (275)
T ss_dssp EEEEEEETTEEEE
T ss_pred CeeEEeCCCcCCC
Confidence 3788888888886
No 434
>PF15176 LRR19-TM: Leucine-rich repeat family 19 TM domain
Probab=20.39 E-value=1.5e+02 Score=20.92 Aligned_cols=19 Identities=11% Similarity=0.160 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHhccCC
Q 022967 24 GIVLSCLLAFTLQIFFFSP 42 (289)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~ 42 (289)
.++.+++++++.+++..++
T Consensus 23 Vv~~al~~SlLIalaaKC~ 41 (102)
T PF15176_consen 23 VVVTALVTSLLIALAAKCP 41 (102)
T ss_pred HHHHHHHHHHHHHHHHHhH
Confidence 3344444555555555444
No 435
>KOG1379 consensus Serine/threonine protein phosphatase [Signal transduction mechanisms]
Probab=20.37 E-value=5.9e+02 Score=22.33 Aligned_cols=77 Identities=19% Similarity=0.295 Sum_probs=42.5
Q ss_pred eEEcC-CCcEEEEeCC-CceEEEeCCCeEEEEeccCCccccCccceEEcCCCc-EEEeeCCCccCccccccccceecCCC
Q 022967 122 ITTTQ-ENEILVCDAD-KGLLKVTEEGVTVLASHVNGSRINLADDLIAATDGS-IYFSVASTKFGLHNWGLDLLEAKPHG 198 (289)
Q Consensus 122 l~~d~-~g~l~v~~~~-~~i~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~dG~-lyv~~~~~~~~~~~~~~~~~~~~~~g 198 (289)
++++. ++.|++++-+ .|...+- +|..++.....-..|+.|+-|...|.|. -|++|.. ..+
T Consensus 174 ~~l~~~~~~Lh~aNLGDSGF~VvR-~G~vv~~S~~Q~H~FN~PyQLs~~p~~~~~~~~d~p----------------~~a 236 (330)
T KOG1379|consen 174 LALDRENGKLHTANLGDSGFLVVR-EGKVVFRSPEQQHYFNTPYQLSSPPEGYSSYISDVP----------------DSA 236 (330)
T ss_pred eeeecCCCeEEEeeccCcceEEEE-CCEEEEcCchheeccCCceeeccCCccccccccCCc----------------ccc
Confidence 34443 6788888765 3443332 3411111111223467788888888774 4444432 245
Q ss_pred EEEEEeCCCCeEEEeeC
Q 022967 199 KLLKYDPSLNETSILLD 215 (289)
Q Consensus 199 ~i~~~~~~~~~~~~~~~ 215 (289)
..+.++.+.|.+.+++.
T Consensus 237 d~~~~~v~~GDvIilAT 253 (330)
T KOG1379|consen 237 DVTSFDVQKGDVIILAT 253 (330)
T ss_pred ceEEEeccCCCEEEEec
Confidence 67777777777766654
No 436
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=20.17 E-value=3e+02 Score=26.85 Aligned_cols=88 Identities=17% Similarity=0.100 Sum_probs=45.5
Q ss_pred CCEEEEEeCCCCeEEEeeCCCC--CcceEEEecCCCEEEEEeCCCCeEEEEEecCCCCcceeeeeccC----CCCCCcee
Q 022967 197 HGKLLKYDPSLNETSILLDSLF--FANGVALSKDEDYLVVCETFKFRCLKYWLKGESKEQTEIFVENL----PGGPDNIK 270 (289)
Q Consensus 197 ~g~i~~~~~~~~~~~~~~~~~~--~p~gl~~~~d~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~----~~~p~~i~ 270 (289)
.|.+|.|+..++.......+.. ......++++.. +.++.+.+.+|.+|.+... ......+.... +.....+.
T Consensus 54 ~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~-lvAagt~~g~V~v~ql~~~-~p~~~~~~t~~d~~~~~rVTal~ 131 (726)
T KOG3621|consen 54 AGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEY-LVAAGTASGRVSVFQLNKE-LPRDLDYVTPCDKSHKCRVTALE 131 (726)
T ss_pred cceEEEEecCchhhhcccccCccceEEEEEecchhH-hhhhhcCCceEEeehhhcc-CCCcceeeccccccCCceEEEEE
Confidence 3667777766555443322111 112234565554 6666667788888876542 22222222111 12233455
Q ss_pred eCCCC-CEEEEEeCccc
Q 022967 271 LAPDG-SFWIAILQVFI 286 (289)
Q Consensus 271 ~d~~G-~lwv~~~~g~i 286 (289)
=+.+| .+|.|+..|=+
T Consensus 132 Ws~~~~k~ysGD~~Gkv 148 (726)
T KOG3621|consen 132 WSKNGMKLYSGDSQGKV 148 (726)
T ss_pred ecccccEEeecCCCceE
Confidence 67777 68888776643
No 437
>PRK10626 hypothetical protein; Provisional
Probab=20.07 E-value=3.3e+02 Score=22.73 Aligned_cols=20 Identities=15% Similarity=0.351 Sum_probs=13.8
Q ss_pred eEEEccCCCEEEEecCCeEEEEe
Q 022967 81 DVCVDRNGVLYTATRDGWIKRLH 103 (289)
Q Consensus 81 ~l~~d~~g~l~v~~~~g~i~~~~ 103 (289)
.+.++++|+||+ +|+-..++
T Consensus 47 ~l~I~~dg~L~i---nGk~v~L~ 66 (239)
T PRK10626 47 NLVISPDGNVMR---NGKQLSLN 66 (239)
T ss_pred ceEEcCCCCEEE---CCEEecCC
Confidence 378889999997 45444444
No 438
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=20.06 E-value=7.7e+02 Score=23.57 Aligned_cols=77 Identities=17% Similarity=0.240 Sum_probs=45.2
Q ss_pred cCccceEEcCCCcEEEeeCCCccCccccccccceecCCCEEEEEeCCCCeEEEee-CCCCCcceEEEecCCCEEEEEeC-
Q 022967 160 NLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILL-DSLFFANGVALSKDEDYLVVCET- 237 (289)
Q Consensus 160 ~~~~~l~~~~dG~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~-~~~~~p~gl~~~~d~~~l~v~~~- 237 (289)
.+.+.+-++|.|++.+...- ....|.+..||.+-....... ......+.+.|+|.|+++.-+.+
T Consensus 493 ~~~N~vfwsPkG~fvvva~l--------------~s~~g~l~F~D~~~a~~k~~~~~eh~~at~veWDPtGRYvvT~ss~ 558 (698)
T KOG2314|consen 493 KFANTVFWSPKGRFVVVAAL--------------VSRRGDLEFYDTDYADLKDTASPEHFAATEVEWDPTGRYVVTSSSS 558 (698)
T ss_pred cccceEEEcCCCcEEEEEEe--------------cccccceEEEecchhhhhhccCccccccccceECCCCCEEEEeeeh
Confidence 46889999999986665331 113467888887632333222 22334567899999995443332
Q ss_pred C----CCeEEEEEecCC
Q 022967 238 F----KFRCLKYWLKGE 250 (289)
Q Consensus 238 ~----~~~i~~~~~~~~ 250 (289)
. .++-..|++.|.
T Consensus 559 wrhk~d~GYri~tfqGr 575 (698)
T KOG2314|consen 559 WRHKVDNGYRIFTFQGR 575 (698)
T ss_pred hhhccccceEEEEeecH
Confidence 1 233445666664
No 439
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=20.06 E-value=4.4e+02 Score=27.27 Aligned_cols=55 Identities=11% Similarity=0.134 Sum_probs=33.6
Q ss_pred EEecCCeEEEEecCCceEEe--eeecCcCccCeEEcCCCcEEEEeCCCc-eEEEe-CCC
Q 022967 92 TATRDGWIKRLHKNGTWENW--KLIGGDTLLGITTTQENEILVCDADKG-LLKVT-EEG 146 (289)
Q Consensus 92 v~~~~g~i~~~~~~g~~~~~--~~~~~~p~~gl~~d~~g~l~v~~~~~~-i~~~~-~~g 146 (289)
+++..|.+...+-+|....+ ......|.+.+++..+|++..+....| |..+| +.+
T Consensus 104 i~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~ 162 (1206)
T KOG2079|consen 104 IGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRA 162 (1206)
T ss_pred EEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCC
Confidence 55566667666655554422 222344555899998998877765555 56666 554
Done!