Query 022968
Match_columns 289
No_of_seqs 169 out of 1336
Neff 8.9
Searched_HMMs 46136
Date Fri Mar 29 07:29:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022968.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/022968hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0667 Tas Predicted oxidored 100.0 2E-65 4.3E-70 456.0 30.0 276 9-289 1-280 (316)
2 KOG1575 Voltage-gated shaker-l 100.0 3.3E-62 7.2E-67 427.7 27.9 280 4-289 7-296 (336)
3 TIGR01293 Kv_beta voltage-depe 100.0 3.9E-58 8.5E-63 411.7 29.1 272 11-289 1-287 (317)
4 PRK10625 tas putative aldo-ket 100.0 1.2E-57 2.6E-62 413.3 30.0 277 9-289 1-310 (346)
5 PRK09912 L-glyceraldehyde 3-ph 100.0 1.2E-57 2.6E-62 412.7 29.8 278 7-289 11-303 (346)
6 PLN02587 L-galactose dehydroge 100.0 2.5E-56 5.5E-61 399.6 28.5 257 11-289 1-267 (314)
7 COG0656 ARA1 Aldo/keto reducta 100.0 1.2E-56 2.7E-61 385.7 22.8 226 9-289 3-235 (280)
8 cd06660 Aldo_ket_red Aldo-keto 100.0 5.3E-54 1.1E-58 379.8 29.2 254 11-289 1-258 (285)
9 PRK10376 putative oxidoreducta 100.0 1.6E-52 3.5E-57 370.8 27.8 243 12-289 10-259 (290)
10 PF00248 Aldo_ket_red: Aldo/ke 100.0 1.2E-52 2.6E-57 370.8 23.0 249 23-289 1-254 (283)
11 PRK14863 bifunctional regulato 100.0 4.7E-52 1E-56 367.4 23.8 242 18-289 2-253 (292)
12 KOG1577 Aldo/keto reductase fa 100.0 4.2E-52 9.1E-57 357.7 22.5 227 11-289 6-256 (300)
13 PRK11172 dkgB 2,5-diketo-D-glu 100.0 7.3E-51 1.6E-55 356.2 24.9 216 19-289 1-223 (267)
14 COG4989 Predicted oxidoreducta 100.0 2.8E-50 6.1E-55 332.7 19.4 255 9-289 1-264 (298)
15 PRK11565 dkgA 2,5-diketo-D-glu 100.0 3.2E-48 6.9E-53 340.7 24.8 223 11-289 6-233 (275)
16 KOG1576 Predicted oxidoreducta 100.0 2.4E-47 5.2E-52 317.6 20.9 264 8-289 21-292 (342)
17 COG1453 Predicted oxidoreducta 100.0 5.2E-46 1.1E-50 323.4 22.4 243 9-289 1-253 (391)
18 KOG3023 Glutamate-cysteine lig 98.4 8.1E-07 1.8E-11 74.2 6.5 71 142-213 155-227 (285)
19 cd03319 L-Ala-DL-Glu_epimerase 94.3 2.1 4.6E-05 38.3 14.5 156 40-218 134-291 (316)
20 COG0635 HemN Coproporphyrinoge 89.3 2.5 5.4E-05 39.5 8.9 109 21-168 148-276 (416)
21 PRK07535 methyltetrahydrofolat 88.1 16 0.00034 31.9 12.6 101 107-214 22-124 (261)
22 TIGR02370 pyl_corrinoid methyl 88.1 7.6 0.00016 32.3 10.2 145 40-207 10-164 (197)
23 cd03315 MLE_like Muconate lact 87.8 17 0.00038 31.4 15.0 158 40-219 85-244 (265)
24 PRK08392 hypothetical protein; 87.4 16 0.00035 30.6 12.0 145 43-210 15-178 (215)
25 cd03316 MR_like Mandelate race 87.3 22 0.00048 32.2 15.5 155 40-214 139-299 (357)
26 cd03174 DRE_TIM_metallolyase D 86.5 11 0.00025 32.3 11.0 106 106-213 15-135 (265)
27 cd02070 corrinoid_protein_B12- 86.3 12 0.00026 31.1 10.5 145 40-207 9-162 (201)
28 PF07021 MetW: Methionine bios 86.1 4.1 8.9E-05 33.7 7.3 150 46-219 5-172 (193)
29 COG1748 LYS9 Saccharopine dehy 81.5 9.7 0.00021 35.2 8.5 81 42-139 79-159 (389)
30 PRK08609 hypothetical protein; 80.7 40 0.00088 33.0 13.0 150 44-210 351-522 (570)
31 cd00739 DHPS DHPS subgroup of 80.1 39 0.00085 29.3 12.2 142 107-269 21-168 (257)
32 COG4130 Predicted sugar epimer 79.2 15 0.00034 30.9 8.1 82 166-266 49-137 (272)
33 cd00308 enolase_like Enolase-s 79.2 21 0.00046 30.1 9.5 88 128-219 120-209 (229)
34 cd00423 Pterin_binding Pterin 78.4 44 0.00095 28.9 12.2 103 107-215 21-129 (258)
35 PRK13958 N-(5'-phosphoribosyl) 78.4 7.6 0.00016 32.6 6.4 67 119-187 16-83 (207)
36 TIGR01928 menC_lowGC/arch o-su 78.3 51 0.0011 29.6 14.1 154 40-219 132-287 (324)
37 TIGR00190 thiC thiamine biosyn 78.2 35 0.00076 31.6 10.8 153 39-223 74-229 (423)
38 COG1140 NarY Nitrate reductase 76.9 1.1 2.3E-05 40.7 0.9 54 155-208 263-317 (513)
39 cd03323 D-glucarate_dehydratas 76.8 63 0.0014 30.0 15.2 151 40-215 168-321 (395)
40 PRK07379 coproporphyrinogen II 76.6 14 0.00029 34.4 8.1 59 108-168 180-255 (400)
41 cd04740 DHOD_1B_like Dihydroor 74.6 60 0.0013 28.6 13.4 151 40-207 100-286 (296)
42 PRK00164 moaA molybdenum cofac 73.7 67 0.0015 28.7 12.9 153 38-211 48-228 (331)
43 PRK13352 thiamine biosynthesis 73.5 57 0.0012 30.4 10.9 153 39-223 74-232 (431)
44 PF03102 NeuB: NeuB family; I 73.4 20 0.00044 30.9 7.8 112 39-169 53-183 (241)
45 PRK06294 coproporphyrinogen II 72.8 20 0.00043 32.9 8.1 60 107-168 167-243 (370)
46 COG0135 TrpF Phosphoribosylant 72.0 28 0.0006 29.3 8.1 81 121-210 19-102 (208)
47 TIGR01502 B_methylAsp_ase meth 70.9 84 0.0018 29.4 11.7 86 129-215 265-357 (408)
48 cd03322 rpsA The starvation se 70.7 85 0.0018 28.6 13.6 146 40-214 126-273 (361)
49 PRK10550 tRNA-dihydrouridine s 70.4 81 0.0017 28.3 13.3 132 40-185 73-223 (312)
50 PRK04452 acetyl-CoA decarbonyl 70.2 83 0.0018 28.3 11.9 92 120-216 85-185 (319)
51 cd02069 methionine_synthase_B1 69.1 69 0.0015 27.0 10.7 145 40-207 13-168 (213)
52 PRK01222 N-(5'-phosphoribosyl) 69.1 15 0.00033 30.8 6.0 66 121-188 20-86 (210)
53 PF05690 ThiG: Thiazole biosyn 68.9 31 0.00066 29.6 7.6 131 21-176 8-142 (247)
54 COG2355 Zn-dependent dipeptida 66.7 51 0.0011 29.6 9.0 106 43-165 150-260 (313)
55 PRK09058 coproporphyrinogen II 66.5 24 0.00052 33.3 7.4 28 107-135 227-254 (449)
56 cd03314 MAL Methylaspartate am 66.4 1E+02 0.0022 28.4 11.3 85 130-214 229-320 (369)
57 cd00740 MeTr MeTr subgroup of 65.8 89 0.0019 27.0 13.5 107 107-218 23-131 (252)
58 PRK05628 coproporphyrinogen II 65.0 39 0.00084 31.0 8.3 60 106-168 171-248 (375)
59 PRK05660 HemN family oxidoredu 64.6 45 0.00098 30.7 8.7 60 107-168 171-243 (378)
60 PF00682 HMGL-like: HMGL-like 64.5 85 0.0018 26.5 9.9 161 39-216 11-193 (237)
61 COG3172 NadR Predicted ATPase/ 64.4 43 0.00094 27.1 7.2 98 53-156 78-185 (187)
62 PRK09856 fructoselysine 3-epim 64.1 75 0.0016 27.4 9.7 51 196-265 93-143 (275)
63 COG2089 SpsE Sialic acid synth 64.0 1.1E+02 0.0024 27.6 11.4 116 39-173 87-221 (347)
64 PRK08599 coproporphyrinogen II 63.6 36 0.00079 31.2 7.9 60 107-168 164-240 (377)
65 PRK13347 coproporphyrinogen II 63.5 31 0.00068 32.6 7.6 60 107-168 216-291 (453)
66 cd01974 Nitrogenase_MoFe_beta 63.3 1.3E+02 0.0029 28.2 11.8 108 62-183 64-191 (435)
67 cd06543 GH18_PF-ChiA-like PF-C 62.8 1.1E+02 0.0024 27.1 14.3 189 17-219 66-266 (294)
68 TIGR00048 radical SAM enzyme, 62.7 29 0.00062 31.8 6.9 89 131-219 219-335 (355)
69 cd07943 DRE_TIM_HOA 4-hydroxy- 62.6 72 0.0016 27.6 9.2 103 107-211 19-130 (263)
70 PRK12581 oxaloacetate decarbox 62.5 1.5E+02 0.0032 28.4 13.3 112 40-167 103-215 (468)
71 PRK14461 ribosomal RNA large s 62.2 87 0.0019 28.9 9.8 89 131-219 232-354 (371)
72 cd08556 GDPD Glycerophosphodie 61.5 82 0.0018 25.1 11.1 152 40-214 11-168 (189)
73 PF11242 DUF2774: Protein of u 60.5 13 0.00029 24.5 3.1 22 255-276 15-36 (63)
74 cd03318 MLE Muconate Lactonizi 60.2 1.4E+02 0.0029 27.2 14.4 154 41-217 143-301 (365)
75 cd03325 D-galactonate_dehydrat 59.0 1.4E+02 0.0031 27.1 14.9 154 40-213 123-285 (352)
76 PF13378 MR_MLE_C: Enolase C-t 58.6 14 0.00031 27.2 3.6 55 164-219 3-58 (111)
77 PLN02746 hydroxymethylglutaryl 58.3 61 0.0013 29.6 8.1 99 107-211 65-180 (347)
78 cd03321 mandelate_racemase Man 57.9 1.5E+02 0.0032 26.9 13.8 152 40-212 141-294 (355)
79 TIGR03822 AblA_like_2 lysine-2 57.8 1.4E+02 0.0031 26.7 11.4 109 108-219 120-240 (321)
80 COG2256 MGS1 ATPase related to 57.7 62 0.0013 30.1 8.0 108 45-168 36-143 (436)
81 TIGR01228 hutU urocanate hydra 57.4 24 0.00052 33.5 5.4 141 16-177 84-245 (545)
82 PRK05414 urocanate hydratase; 57.4 25 0.00055 33.5 5.5 124 47-177 117-254 (556)
83 cd07944 DRE_TIM_HOA_like 4-hyd 57.2 1.3E+02 0.0029 26.1 12.2 104 105-211 15-127 (266)
84 TIGR00735 hisF imidazoleglycer 56.6 1.1E+02 0.0023 26.4 9.2 89 118-209 162-253 (254)
85 PF14871 GHL6: Hypothetical gl 56.4 27 0.00059 27.0 4.9 25 192-216 43-67 (132)
86 COG2949 SanA Uncharacterized m 56.3 1.2E+02 0.0026 25.5 8.7 98 111-214 77-181 (235)
87 COG2102 Predicted ATPases of P 56.2 43 0.00092 28.4 6.2 101 140-268 73-177 (223)
88 PRK00730 rnpA ribonuclease P; 56.1 70 0.0015 25.0 7.0 63 83-155 46-110 (138)
89 PRK05692 hydroxymethylglutaryl 56.1 27 0.00059 30.9 5.5 102 107-211 23-138 (287)
90 PRK14462 ribosomal RNA large s 56.0 1.5E+02 0.0032 27.2 10.3 87 133-219 226-340 (356)
91 PRK15072 bifunctional D-altron 55.8 1.3E+02 0.0029 27.9 10.2 83 128-214 232-316 (404)
92 KOG0259 Tyrosine aminotransfer 55.1 1.8E+02 0.0039 27.0 14.3 153 39-222 78-248 (447)
93 PLN02522 ATP citrate (pro-S)-l 54.2 18 0.0004 35.5 4.3 34 64-97 228-262 (608)
94 TIGR02534 mucon_cyclo muconate 54.0 1.7E+02 0.0038 26.6 14.3 154 44-218 145-301 (368)
95 PRK00507 deoxyribose-phosphate 54.0 81 0.0018 26.7 7.8 43 39-81 133-175 (221)
96 cd03327 MR_like_2 Mandelate ra 54.0 1.7E+02 0.0037 26.4 15.1 154 40-213 120-280 (341)
97 PRK13803 bifunctional phosphor 53.9 78 0.0017 31.3 8.7 68 121-188 20-88 (610)
98 COG2069 CdhD CO dehydrogenase/ 53.9 1.6E+02 0.0035 26.2 10.1 96 118-218 158-263 (403)
99 PRK09061 D-glutamate deacylase 53.9 1.2E+02 0.0027 29.1 10.0 116 43-167 170-286 (509)
100 PRK14459 ribosomal RNA large s 53.7 85 0.0018 29.0 8.4 89 131-219 242-361 (373)
101 TIGR01290 nifB nitrogenase cof 53.1 2E+02 0.0044 27.1 12.8 112 105-219 58-200 (442)
102 cd00405 PRAI Phosphoribosylant 52.3 75 0.0016 26.2 7.3 41 127-171 73-113 (203)
103 PRK08195 4-hyroxy-2-oxovalerat 51.9 1.9E+02 0.004 26.3 10.4 103 105-212 20-134 (337)
104 PRK13796 GTPase YqeH; Provisio 51.5 1.9E+02 0.0042 26.4 13.7 120 39-171 54-176 (365)
105 TIGR00538 hemN oxygen-independ 51.4 65 0.0014 30.4 7.5 60 107-168 215-290 (455)
106 TIGR01496 DHPS dihydropteroate 50.9 1.7E+02 0.0036 25.4 13.9 100 107-213 20-125 (257)
107 PRK07259 dihydroorotate dehydr 50.5 1.8E+02 0.0039 25.7 11.5 155 40-208 102-290 (301)
108 PRK00077 eno enolase; Provisio 49.8 2.3E+02 0.0049 26.6 10.8 96 107-211 261-361 (425)
109 TIGR00126 deoC deoxyribose-pho 49.6 1.6E+02 0.0034 24.8 9.4 76 39-127 129-205 (211)
110 COG1801 Uncharacterized conser 49.6 1.8E+02 0.0039 25.4 10.8 111 23-140 4-116 (263)
111 PF11020 DUF2610: Domain of un 49.2 47 0.001 23.2 4.5 30 246-275 47-76 (82)
112 PRK05283 deoxyribose-phosphate 48.4 1.6E+02 0.0035 25.7 8.8 79 40-129 144-227 (257)
113 PF10668 Phage_terminase: Phag 48.3 47 0.001 21.9 4.3 17 255-271 24-40 (60)
114 cd01965 Nitrogenase_MoFe_beta_ 48.1 2.4E+02 0.0051 26.4 13.0 100 71-184 65-187 (428)
115 PRK14457 ribosomal RNA large s 47.9 2.2E+02 0.0047 26.0 11.4 108 112-219 196-332 (345)
116 PRK02910 light-independent pro 47.8 2.7E+02 0.0058 26.9 13.6 99 71-184 69-193 (519)
117 TIGR00381 cdhD CO dehydrogenas 47.8 2.3E+02 0.005 26.2 11.4 103 110-219 128-253 (389)
118 TIGR02026 BchE magnesium-proto 47.7 1.8E+02 0.004 27.8 10.0 66 140-207 320-392 (497)
119 TIGR01278 DPOR_BchB light-inde 47.4 2.7E+02 0.0058 26.8 14.9 100 71-184 69-193 (511)
120 cd02930 DCR_FMN 2,4-dienoyl-Co 47.0 2.2E+02 0.0049 25.8 12.6 24 38-61 126-156 (353)
121 PRK06582 coproporphyrinogen II 46.8 1.1E+02 0.0024 28.3 8.1 61 106-168 173-250 (390)
122 PLN00191 enolase 46.6 1.9E+02 0.004 27.6 9.6 97 107-212 295-394 (457)
123 PRK09427 bifunctional indole-3 46.2 59 0.0013 30.8 6.3 65 120-188 273-338 (454)
124 PRK07945 hypothetical protein; 45.2 2.4E+02 0.0051 25.5 16.1 107 42-163 111-227 (335)
125 PLN02363 phosphoribosylanthran 45.0 81 0.0018 27.4 6.5 74 108-187 56-130 (256)
126 COG1168 MalY Bifunctional PLP- 44.8 2.6E+02 0.0056 25.9 12.1 56 167-222 146-207 (388)
127 COG2873 MET17 O-acetylhomoseri 44.7 2.6E+02 0.0057 25.9 12.4 75 30-126 51-128 (426)
128 PF00682 HMGL-like: HMGL-like 44.5 1.9E+02 0.0041 24.3 9.9 97 107-209 11-124 (237)
129 PRK12928 lipoyl synthase; Prov 44.3 2.3E+02 0.0049 25.1 9.5 161 39-215 87-280 (290)
130 PRK09284 thiamine biosynthesis 44.1 3E+02 0.0066 26.8 10.4 176 40-265 230-410 (607)
131 PRK07531 bifunctional 3-hydrox 43.8 3E+02 0.0065 26.3 10.9 124 126-274 79-217 (495)
132 smart00642 Aamy Alpha-amylase 43.6 38 0.00081 27.3 4.0 21 196-216 73-93 (166)
133 cd03326 MR_like_1 Mandelate ra 43.6 2.7E+02 0.0058 25.7 12.7 149 40-209 160-314 (385)
134 COG3623 SgaU Putative L-xylulo 43.4 26 0.00057 30.0 3.1 47 16-63 65-117 (287)
135 PF01175 Urocanase: Urocanase; 43.3 67 0.0015 30.7 6.0 129 45-187 105-257 (546)
136 COG1151 6Fe-6S prismane cluste 43.1 1.4E+02 0.003 29.0 8.1 94 110-208 360-462 (576)
137 PRK02901 O-succinylbenzoate sy 42.8 2.4E+02 0.0051 25.5 9.4 71 146-218 173-244 (327)
138 cd01973 Nitrogenase_VFe_beta_l 42.7 3E+02 0.0065 26.1 14.9 113 62-185 65-194 (454)
139 COG2987 HutU Urocanate hydrata 42.5 56 0.0012 30.8 5.2 111 69-186 148-266 (561)
140 PLN02444 HMP-P synthase 42.1 2.9E+02 0.0063 27.0 10.0 149 40-223 235-387 (642)
141 PF07994 NAD_binding_5: Myo-in 42.1 62 0.0013 28.8 5.4 132 109-280 131-272 (295)
142 COG0001 HemL Glutamate-1-semia 41.9 3.1E+02 0.0066 25.9 13.4 141 40-211 70-239 (432)
143 PRK14456 ribosomal RNA large s 41.8 1.5E+02 0.0032 27.3 8.0 79 141-219 260-355 (368)
144 TIGR03217 4OH_2_O_val_ald 4-hy 41.5 2.7E+02 0.0059 25.2 10.8 101 105-211 19-132 (333)
145 TIGR00676 fadh2 5,10-methylene 41.4 2.4E+02 0.0052 24.6 12.6 155 42-220 15-193 (272)
146 PHA02128 hypothetical protein 41.3 90 0.0019 23.1 5.2 69 144-212 61-150 (151)
147 COG1751 Uncharacterized conser 41.3 95 0.0021 24.8 5.6 73 40-126 12-85 (186)
148 PRK09856 fructoselysine 3-epim 40.8 2.2E+02 0.0047 24.5 8.8 22 196-217 50-71 (275)
149 PRK14453 chloramphenicol/florf 40.8 2.8E+02 0.0062 25.2 9.8 94 126-219 203-332 (347)
150 PF14502 HTH_41: Helix-turn-he 40.8 31 0.00068 21.6 2.4 30 253-282 6-37 (48)
151 TIGR03821 AblA_like_1 lysine-2 40.8 2.7E+02 0.0059 25.0 11.0 90 130-219 145-246 (321)
152 cd04731 HisF The cyclase subun 40.3 2.3E+02 0.005 24.0 9.8 65 118-185 156-222 (243)
153 TIGR01927 menC_gamma/gm+ o-suc 40.2 2.7E+02 0.0058 24.8 9.5 86 128-219 183-270 (307)
154 cd02803 OYE_like_FMN_family Ol 39.9 2.7E+02 0.0059 24.7 14.0 40 146-185 270-310 (327)
155 TIGR00035 asp_race aspartate r 39.8 1.1E+02 0.0024 25.9 6.5 64 107-171 14-89 (229)
156 TIGR03247 glucar-dehydr glucar 39.7 3.3E+02 0.0072 25.7 14.3 156 40-214 180-337 (441)
157 PRK14455 ribosomal RNA large s 39.6 1.4E+02 0.003 27.3 7.5 89 131-219 223-339 (356)
158 PRK12331 oxaloacetate decarbox 39.6 1.9E+02 0.0042 27.4 8.6 101 107-211 23-141 (448)
159 cd03317 NAAAR N-acylamino acid 39.2 2.9E+02 0.0063 24.9 14.3 150 42-218 139-291 (354)
160 COG1121 ZnuC ABC-type Mn/Zn tr 39.2 1.2E+02 0.0026 26.3 6.6 62 113-176 117-207 (254)
161 PRK09249 coproporphyrinogen II 39.0 1.3E+02 0.0028 28.5 7.4 60 107-168 215-290 (453)
162 PRK10200 putative racemase; Pr 39.0 1.3E+02 0.0029 25.5 6.9 64 107-171 14-89 (230)
163 COG0159 TrpA Tryptophan syntha 38.8 2.7E+02 0.0058 24.4 9.2 20 196-215 137-156 (265)
164 PF00148 Oxidored_nitro: Nitro 38.8 3E+02 0.0065 25.2 9.8 128 71-211 58-221 (398)
165 PF07287 DUF1446: Protein of u 38.1 92 0.002 28.6 6.0 17 196-212 61-77 (362)
166 PF04481 DUF561: Protein of un 37.8 1.8E+02 0.004 24.7 7.1 107 40-157 25-146 (242)
167 TIGR02026 BchE magnesium-proto 37.7 3.7E+02 0.0081 25.7 10.9 101 107-211 222-341 (497)
168 cd02067 B12-binding B12 bindin 37.7 1.7E+02 0.0036 21.6 8.3 61 145-206 16-78 (119)
169 PF01402 RHH_1: Ribbon-helix-h 37.2 84 0.0018 18.1 4.2 22 251-272 9-30 (39)
170 TIGR01060 eno phosphopyruvate 36.9 3.6E+02 0.0078 25.3 10.6 96 107-211 262-362 (425)
171 PF01118 Semialdhyde_dh: Semia 36.6 50 0.0011 24.7 3.5 28 40-67 75-102 (121)
172 COG0145 HyuA N-methylhydantoin 36.6 3.9E+02 0.0085 26.9 10.5 98 38-138 135-243 (674)
173 cd02801 DUS_like_FMN Dihydrour 36.5 2.5E+02 0.0054 23.3 9.9 133 40-185 65-212 (231)
174 TIGR03569 NeuB_NnaB N-acetylne 36.4 3.3E+02 0.0071 24.7 10.8 115 39-170 73-206 (329)
175 COG0820 Predicted Fe-S-cluster 36.1 3E+02 0.0065 25.2 8.8 89 130-219 215-332 (349)
176 COG4943 Predicted signal trans 36.1 2.7E+02 0.0058 26.7 8.7 125 73-211 342-476 (524)
177 PF02679 ComA: (2R)-phospho-3- 35.8 56 0.0012 28.2 4.0 98 113-211 24-131 (244)
178 PRK13361 molybdenum cofactor b 35.5 3.3E+02 0.0071 24.4 13.8 132 38-190 44-194 (329)
179 PF05913 DUF871: Bacterial pro 35.5 57 0.0012 29.9 4.3 157 40-216 12-179 (357)
180 PF00072 Response_reg: Respons 35.5 1.3E+02 0.0028 21.2 5.7 67 119-188 35-103 (112)
181 PF05049 IIGP: Interferon-indu 35.4 1.1E+02 0.0023 28.3 6.0 87 61-150 122-214 (376)
182 PRK14470 ribosomal RNA large s 35.4 2.7E+02 0.0058 25.3 8.6 89 131-219 208-324 (336)
183 COG0422 ThiC Thiamine biosynth 35.2 3.7E+02 0.008 24.9 10.6 150 39-222 75-229 (432)
184 KOG0059 Lipid exporter ABCA1 a 34.9 2.2E+02 0.0048 29.6 8.8 70 108-179 671-769 (885)
185 PRK15440 L-rhamnonate dehydrat 34.8 2.8E+02 0.0061 25.7 8.8 68 145-212 247-318 (394)
186 PRK14466 ribosomal RNA large s 34.7 3.6E+02 0.0078 24.6 9.7 90 130-219 210-327 (345)
187 PF07555 NAGidase: beta-N-acet 34.4 76 0.0017 28.4 4.8 99 33-163 6-110 (306)
188 cd07948 DRE_TIM_HCS Saccharomy 34.3 3.1E+02 0.0068 23.8 11.5 24 39-62 19-42 (262)
189 cd00248 Mth938-like Mth938-lik 34.1 1.4E+02 0.0031 22.1 5.6 53 163-215 36-88 (109)
190 PRK08776 cystathionine gamma-s 34.1 2.2E+02 0.0048 26.4 8.1 75 144-218 111-187 (405)
191 TIGR02082 metH 5-methyltetrahy 34.0 6.4E+02 0.014 27.3 14.4 122 122-270 379-506 (1178)
192 cd02932 OYE_YqiM_FMN Old yello 33.2 3.6E+02 0.0078 24.2 13.4 94 84-185 219-319 (336)
193 PTZ00081 enolase; Provisional 33.0 4.3E+02 0.0093 25.0 10.4 96 107-211 281-381 (439)
194 PRK12569 hypothetical protein; 32.9 2.3E+02 0.005 24.5 7.2 86 21-123 11-98 (245)
195 cd07939 DRE_TIM_NifV Streptomy 32.7 3.2E+02 0.007 23.5 12.9 97 106-210 16-127 (259)
196 COG0626 MetC Cystathionine bet 32.6 2.5E+02 0.0055 26.2 8.0 80 143-222 113-195 (396)
197 PRK14017 galactonate dehydrata 32.5 4E+02 0.0086 24.4 15.8 155 40-214 124-287 (382)
198 PRK05406 LamB/YcsF family prot 32.4 2.1E+02 0.0045 24.8 6.9 81 25-123 13-95 (246)
199 cd03329 MR_like_4 Mandelate ra 32.3 3.9E+02 0.0084 24.3 15.5 152 40-213 143-299 (368)
200 PF13518 HTH_28: Helix-turn-he 32.3 59 0.0013 19.9 2.8 22 255-277 14-35 (52)
201 cd01966 Nitrogenase_NifN_1 Nit 32.3 4.2E+02 0.0092 24.7 11.2 106 64-183 62-188 (417)
202 cd04742 NPD_FabD 2-Nitropropan 31.8 2.1E+02 0.0045 26.9 7.4 88 120-214 7-103 (418)
203 PRK09490 metH B12-dependent me 31.8 7.1E+02 0.015 27.1 14.1 201 40-270 290-522 (1229)
204 PF00809 Pterin_bind: Pterin b 31.7 2.6E+02 0.0056 23.3 7.4 91 121-215 29-125 (210)
205 PRK14460 ribosomal RNA large s 31.4 4.1E+02 0.0089 24.3 9.8 100 119-219 207-334 (354)
206 COG2185 Sbm Methylmalonyl-CoA 31.3 2.4E+02 0.0052 22.2 6.5 76 157-266 16-93 (143)
207 KOG0173 20S proteasome, regula 31.2 42 0.00092 28.8 2.5 41 20-61 158-204 (271)
208 TIGR01182 eda Entner-Doudoroff 31.2 2.7E+02 0.0059 23.3 7.3 88 108-211 18-106 (204)
209 PRK10415 tRNA-dihydrouridine s 31.0 3.9E+02 0.0085 23.9 10.4 135 40-186 75-224 (321)
210 cd08557 PI-PLCc_bacteria_like 31.0 1.1E+02 0.0023 26.3 5.2 20 46-65 41-60 (271)
211 PRK14463 ribosomal RNA large s 30.8 3E+02 0.0064 25.1 8.1 89 131-219 211-327 (349)
212 PRK06015 keto-hydroxyglutarate 30.7 1.2E+02 0.0026 25.4 5.1 88 108-211 14-102 (201)
213 PF13407 Peripla_BP_4: Peripla 30.5 2.1E+02 0.0045 23.9 6.9 52 110-167 14-65 (257)
214 PF00697 PRAI: N-(5'phosphorib 30.3 62 0.0013 26.7 3.4 67 118-188 13-80 (197)
215 PRK09454 ugpQ cytoplasmic glyc 30.2 3.5E+02 0.0075 23.1 14.5 23 40-62 20-42 (249)
216 PRK06361 hypothetical protein; 30.2 3.1E+02 0.0068 22.5 17.4 184 43-275 11-201 (212)
217 PLN02428 lipoic acid synthase 30.1 4.1E+02 0.0089 24.3 8.8 158 39-217 130-325 (349)
218 PF00388 PI-PLC-X: Phosphatidy 30.0 41 0.00088 26.2 2.1 22 45-66 29-50 (146)
219 PRK00208 thiG thiazole synthas 30.0 3.7E+02 0.008 23.3 14.6 105 106-212 72-181 (250)
220 cd00019 AP2Ec AP endonuclease 29.8 3.6E+02 0.0077 23.2 8.3 23 245-267 117-139 (279)
221 PF13467 RHH_4: Ribbon-helix-h 29.4 66 0.0014 21.7 2.7 27 252-278 22-48 (67)
222 CHL00076 chlB photochlorophyll 29.3 5.3E+02 0.011 24.9 15.3 57 127-183 116-197 (513)
223 TIGR01428 HAD_type_II 2-haloal 29.3 1.4E+02 0.0031 24.1 5.4 64 112-177 61-128 (198)
224 KOG1196 Predicted NAD-dependen 29.2 81 0.0017 28.3 3.9 99 43-161 211-310 (343)
225 TIGR01862 N2-ase-Ialpha nitrog 29.0 4.9E+02 0.011 24.5 12.3 103 63-182 97-220 (443)
226 PLN02540 methylenetetrahydrofo 28.9 5.7E+02 0.012 25.1 13.0 159 41-220 14-205 (565)
227 cd01821 Rhamnogalacturan_acety 28.6 3.1E+02 0.0067 22.0 8.0 53 196-267 97-149 (198)
228 cd07937 DRE_TIM_PC_TC_5S Pyruv 28.5 3.6E+02 0.0078 23.5 8.0 100 107-211 18-136 (275)
229 TIGR01163 rpe ribulose-phospha 28.4 3.3E+02 0.007 22.2 9.2 99 107-209 8-107 (210)
230 cd01075 NAD_bind_Leu_Phe_Val_D 28.4 1.8E+02 0.0038 24.1 5.8 73 197-278 123-197 (200)
231 cd01301 rDP_like renal dipepti 28.3 3.6E+02 0.0078 24.1 8.1 107 42-165 154-263 (309)
232 COG0218 Predicted GTPase [Gene 28.2 3.6E+02 0.0077 22.6 8.4 100 42-155 91-198 (200)
233 COG4321 Uncharacterized protei 28.1 1.2E+02 0.0026 22.2 4.0 18 253-270 36-53 (102)
234 PRK03995 hypothetical protein; 28.0 2.9E+02 0.0063 24.2 7.2 83 20-127 181-264 (267)
235 COG1131 CcmA ABC-type multidru 27.8 1.6E+02 0.0035 26.0 5.8 61 113-176 142-205 (293)
236 PF09989 DUF2229: CoA enzyme a 27.5 2.1E+02 0.0046 24.2 6.2 33 180-212 186-218 (221)
237 cd07948 DRE_TIM_HCS Saccharomy 27.5 3.8E+02 0.0083 23.2 8.0 98 107-212 19-131 (262)
238 PRK07003 DNA polymerase III su 27.4 7E+02 0.015 25.7 12.5 95 108-208 100-197 (830)
239 cd07937 DRE_TIM_PC_TC_5S Pyruv 27.3 4.2E+02 0.0091 23.1 16.3 26 38-63 17-42 (275)
240 TIGR02814 pfaD_fam PfaD family 27.3 2.6E+02 0.0056 26.5 7.2 87 120-213 12-107 (444)
241 PRK08446 coproporphyrinogen II 27.2 1.5E+02 0.0032 26.9 5.6 60 107-168 162-231 (350)
242 KOG2499 Beta-N-acetylhexosamin 27.1 84 0.0018 29.9 3.9 45 19-67 230-278 (542)
243 COG3653 N-acyl-D-aspartate/D-g 27.1 5.5E+02 0.012 24.4 14.9 84 43-138 183-279 (579)
244 cd03324 rTSbeta_L-fuconate_deh 27.1 5.2E+02 0.011 24.1 15.6 152 40-213 196-352 (415)
245 COG1523 PulA Type II secretory 27.0 51 0.0011 33.0 2.7 77 117-211 206-283 (697)
246 PF07476 MAAL_C: Methylasparta 26.8 2.2E+02 0.0048 24.3 5.9 102 106-210 85-193 (248)
247 cd07943 DRE_TIM_HOA 4-hydroxy- 26.8 4.1E+02 0.0089 22.8 16.1 24 39-62 19-42 (263)
248 KOG1549 Cysteine desulfurase N 26.8 5.5E+02 0.012 24.2 9.5 156 42-218 57-223 (428)
249 TIGR00677 fadh2_euk methylenet 26.7 4.4E+02 0.0095 23.1 12.3 158 41-220 15-197 (281)
250 TIGR00789 flhB_rel flhB C-term 26.5 1E+02 0.0022 21.7 3.4 25 196-220 30-54 (82)
251 PRK09536 btuD corrinoid ABC tr 26.4 2.2E+02 0.0048 26.5 6.6 74 145-218 279-352 (402)
252 COG0135 TrpF Phosphoribosylant 26.3 89 0.0019 26.3 3.6 98 40-168 11-112 (208)
253 PRK14041 oxaloacetate decarbox 26.0 3.3E+02 0.0071 26.0 7.7 98 107-210 22-139 (467)
254 TIGR03471 HpnJ hopanoid biosyn 25.9 5.7E+02 0.012 24.2 11.6 150 39-208 227-393 (472)
255 cd03313 enolase Enolase: Enola 25.9 5.4E+02 0.012 23.9 10.7 96 107-211 261-361 (408)
256 TIGR03849 arch_ComA phosphosul 25.8 2.9E+02 0.0063 23.7 6.7 95 114-210 12-117 (237)
257 COG0646 MetH Methionine syntha 25.8 4.9E+02 0.011 23.3 10.7 173 42-216 52-256 (311)
258 PRK06298 type III secretion sy 25.7 71 0.0015 29.3 3.2 25 196-220 293-317 (356)
259 cd03320 OSBS o-Succinylbenzoat 25.7 4.3E+02 0.0093 22.7 13.1 86 128-218 153-239 (263)
260 cd01822 Lysophospholipase_L1_l 25.5 3.2E+02 0.007 21.2 8.7 51 196-270 91-141 (177)
261 COG4464 CapC Capsular polysacc 25.4 3.2E+02 0.0068 23.3 6.5 29 39-67 17-45 (254)
262 cd08590 PI-PLCc_Rv2075c_like C 25.3 2.7E+02 0.0058 24.3 6.6 19 46-64 45-63 (267)
263 PF01904 DUF72: Protein of unk 25.2 4.2E+02 0.0091 22.4 10.5 128 56-211 19-147 (230)
264 PF01408 GFO_IDH_MocA: Oxidore 24.9 2.3E+02 0.0051 20.5 5.5 62 149-211 54-118 (120)
265 COG2040 MHT1 Homocysteine/sele 24.8 5E+02 0.011 23.1 11.5 168 41-214 42-241 (300)
266 PF01408 GFO_IDH_MocA: Oxidore 24.8 2.7E+02 0.0059 20.1 9.1 44 171-217 54-97 (120)
267 COG2874 FlaH Predicted ATPases 24.8 3.2E+02 0.0068 23.4 6.5 113 43-165 44-167 (235)
268 PF01476 LysM: LysM domain; I 24.6 79 0.0017 18.5 2.3 18 254-271 7-24 (44)
269 PF01053 Cys_Met_Meta_PP: Cys/ 24.4 3E+02 0.0065 25.5 7.1 79 143-221 105-186 (386)
270 PF01081 Aldolase: KDPG and KH 24.4 1.4E+02 0.0031 24.8 4.5 86 109-211 19-106 (196)
271 PF10007 DUF2250: Uncharacteri 24.4 51 0.0011 23.8 1.6 49 114-165 10-58 (92)
272 COG1217 TypA Predicted membran 24.4 4.3E+02 0.0093 25.5 7.9 61 55-125 69-153 (603)
273 PRK12558 glutamyl-tRNA synthet 24.3 1.8E+02 0.0039 27.6 5.6 59 107-173 48-106 (445)
274 smart00148 PLCXc Phospholipase 24.2 65 0.0014 24.9 2.3 22 44-65 30-51 (135)
275 PRK14464 ribosomal RNA large s 24.1 5.5E+02 0.012 23.4 8.9 80 140-220 223-320 (344)
276 PRK14457 ribosomal RNA large s 24.1 5.5E+02 0.012 23.4 13.1 135 84-219 100-266 (345)
277 PRK02083 imidazole glycerol ph 23.8 4.6E+02 0.01 22.3 9.4 86 121-209 163-251 (253)
278 PF05368 NmrA: NmrA-like famil 23.7 3.4E+02 0.0073 22.5 6.9 86 126-219 21-107 (233)
279 COG2055 Malate/L-lactate dehyd 23.7 5.7E+02 0.012 23.4 9.3 87 107-211 6-113 (349)
280 COG2022 ThiG Uncharacterized e 23.6 3.5E+02 0.0077 23.3 6.6 54 106-159 79-133 (262)
281 cd08583 PI-PLCc_GDPD_SF_unchar 23.5 4.4E+02 0.0096 22.1 9.8 22 40-61 13-34 (237)
282 PRK13109 flhB flagellar biosyn 23.1 82 0.0018 28.9 3.1 25 196-220 301-325 (358)
283 TIGR00262 trpA tryptophan synt 23.1 4.9E+02 0.011 22.5 9.2 100 113-214 23-149 (256)
284 COG2861 Uncharacterized protei 22.9 3.1E+02 0.0066 23.7 6.2 26 141-167 104-129 (250)
285 PRK14476 nitrogenase molybdenu 22.8 6.6E+02 0.014 23.8 13.9 108 63-183 72-199 (455)
286 PRK08247 cystathionine gamma-s 22.8 4.9E+02 0.011 23.6 8.2 61 159-219 117-179 (366)
287 COG1908 FrhD Coenzyme F420-red 22.8 3.5E+02 0.0077 20.7 6.3 61 71-137 42-106 (132)
288 COG2875 CobM Precorrin-4 methy 22.8 3.6E+02 0.0078 23.2 6.5 101 107-212 59-165 (254)
289 cd00668 Ile_Leu_Val_MetRS_core 22.7 1.4E+02 0.003 26.5 4.4 48 109-160 81-131 (312)
290 COG1679 Predicted aconitase [G 22.5 6.3E+02 0.014 23.4 9.4 105 45-156 207-316 (403)
291 cd02742 GH20_hexosaminidase Be 22.4 1.1E+02 0.0025 27.0 3.8 17 195-211 74-90 (303)
292 PRK09613 thiH thiamine biosynt 22.2 7E+02 0.015 23.9 13.0 171 39-211 28-237 (469)
293 PF01244 Peptidase_M19: Membra 22.1 1.6E+02 0.0035 26.5 4.7 107 42-165 160-271 (320)
294 PRK11267 biopolymer transport 22.0 2.2E+02 0.0048 22.0 5.0 54 107-165 81-134 (141)
295 PRK10508 hypothetical protein; 21.9 2.1E+02 0.0045 25.9 5.4 43 107-154 286-328 (333)
296 cd04734 OYE_like_3_FMN Old yel 21.8 6E+02 0.013 23.0 10.2 110 38-166 130-251 (343)
297 PRK15108 biotin synthase; Prov 21.8 6.1E+02 0.013 23.0 10.6 108 107-218 76-196 (345)
298 KOG3085 Predicted hydrolase (H 21.7 2E+02 0.0044 24.7 5.0 66 140-208 113-184 (237)
299 PRK11024 colicin uptake protei 21.6 2.1E+02 0.0045 22.1 4.8 52 108-164 86-137 (141)
300 PRK12721 secretion system appa 21.6 92 0.002 28.4 3.1 25 196-220 292-316 (349)
301 cd05560 Xcc1710_like Xcc1710_l 21.6 2.9E+02 0.0063 20.4 5.3 52 163-215 37-88 (109)
302 cd07945 DRE_TIM_CMS Leptospira 21.6 1.3E+02 0.0029 26.4 4.0 110 102-212 11-134 (280)
303 PLN02438 inositol-3-phosphate 21.5 4.9E+02 0.011 25.1 7.8 49 109-157 206-258 (510)
304 TIGR01430 aden_deam adenosine 21.5 5.7E+02 0.012 22.6 13.5 104 108-216 138-242 (324)
305 PRK05458 guanosine 5'-monophos 21.4 6.1E+02 0.013 22.9 8.5 126 77-211 15-145 (326)
306 PRK14469 ribosomal RNA large s 21.4 6E+02 0.013 23.0 8.3 89 131-219 212-327 (343)
307 TIGR01404 FlhB_rel_III type II 21.3 93 0.002 28.3 3.0 25 196-220 291-315 (342)
308 PF02310 B12-binding: B12 bind 21.2 3.3E+02 0.0072 19.7 7.2 19 196-214 69-89 (121)
309 PF04748 Polysacc_deac_2: Dive 21.2 4E+02 0.0088 22.3 6.7 52 39-94 71-128 (213)
310 cd01297 D-aminoacylase D-amino 21.2 6.6E+02 0.014 23.2 11.2 112 42-165 167-283 (415)
311 cd00814 MetRS_core catalytic c 21.0 1.5E+02 0.0033 26.4 4.3 47 109-158 68-114 (319)
312 PRK03892 ribonuclease P protei 20.9 5.1E+02 0.011 21.9 12.0 121 71-216 19-141 (216)
313 PRK08084 DNA replication initi 20.8 2.6E+02 0.0057 23.6 5.6 45 127-171 97-145 (235)
314 PF01791 DeoC: DeoC/LacD famil 20.7 4.5E+02 0.0098 22.1 7.1 99 40-155 16-120 (236)
315 PRK09282 pyruvate carboxylase 20.6 4E+02 0.0086 26.3 7.4 92 113-212 28-142 (592)
316 cd01948 EAL EAL domain. This d 20.5 4.1E+02 0.009 21.7 6.8 98 110-211 98-207 (240)
317 PF07027 DUF1318: Protein of u 20.4 2.4E+02 0.0051 20.5 4.4 30 247-276 44-73 (95)
318 PRK05588 histidinol-phosphatas 20.3 5.4E+02 0.012 21.9 14.5 81 42-137 16-103 (255)
319 TIGR00737 nifR3_yhdG putative 20.1 6.2E+02 0.013 22.5 12.1 133 40-186 73-222 (319)
320 PRK15108 biotin synthase; Prov 20.1 6.6E+02 0.014 22.8 11.1 106 39-160 76-188 (345)
321 COG0502 BioB Biotin synthase a 20.0 6.3E+02 0.014 23.0 7.9 101 39-160 84-196 (335)
No 1
>COG0667 Tas Predicted oxidoreductases (related to aryl-alcohol dehydrogenases) [Energy production and conversion]
Probab=100.00 E-value=2e-65 Score=456.01 Aligned_cols=276 Identities=43% Similarity=0.643 Sum_probs=246.0
Q ss_pred CCeeEcCCCCcccCccccccccCCCCCCCCCCHHHHHHHHHHHHHcCCCeEeCCcCcCCCChhHHHHHHHHhcCC-CCCE
Q 022968 9 VPRVKLGSQGLEVSRLGFGCGGLSGIYNKPLSHEVGCSIIKETFNRGITLFDTSDVYGVDHDNEIMVGKALKQLP-RDKI 87 (289)
Q Consensus 9 m~~~~lg~~g~~vs~lg~G~~~~~~~~~~~~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~~g~se~~lg~~l~~~~-R~~~ 87 (289)
|++|+||++|++||+||||||.+|+.+. ..+.+++.++|++|+|+||||||||+.||. |.||+++|+||++.. |+++
T Consensus 1 m~~r~lG~~gl~vs~lglG~~~~g~~~~-~~~~~~a~~il~~A~d~Gin~~DTA~~Yg~-g~sE~ilG~~l~~~~~Rd~v 78 (316)
T COG0667 1 MKYRRLGRSGLKVSPLGLGTMTLGGDTD-DEEEAEAIEILDAALDAGINFFDTADVYGD-GRSEEILGEALKERGRRDKV 78 (316)
T ss_pred CCceecCCCCceecceeeeccccCCCCC-chhhhHHHHHHHHHHHcCCCEEECccccCC-CchHHHHHHHHhccCCCCeE
Confidence 7899999999999999999999987532 235667888999999999999999999998 899999999999854 8999
Q ss_pred EEEecccccccCCccc-CCCCCHHHHHHHHHHHHHHcCCCcccEEeecCCCCCCCHHHHHHHHHHHHHcCccceeecCCC
Q 022968 88 QLATKFGCFMLDGVSI-GVKGSPEYVRKCCEASLKRLDVDYIDLYYQHRVDTSVSIEDTMGELKKLVEEGKIKYIGLSEA 166 (289)
Q Consensus 88 ~I~tK~~~~~~~~~~~-~~~~~~~~i~~~~~~sL~~L~~~~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~iGvs~~ 166 (289)
+|+||++....++... ..+.++++|+++++.||+||||||||+||+||||+..+.++++++|.+|+++||||++|+||+
T Consensus 79 vIaTK~g~~~~~~~~~~~~~~s~~~i~~~v~~SL~RLgtd~IDl~~iH~~d~~~p~~e~~~aL~~l~~~G~ir~iG~S~~ 158 (316)
T COG0667 79 VIATKVGYRPGDPGPNGVFGLSRDHIRRAVEASLKRLGTDYIDLYQLHRPDPETPIEETLEALDELVREGKIRYIGVSNY 158 (316)
T ss_pred EEEEeeccCCCCCCCCccCCCCHHHHHHHHHHHHHHhCCCceeEEEeCCCCCCCCHHHHHHHHHHHHHcCCeeEEEecCC
Confidence 9999998776432222 257899999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHcc-CCceEEeccCCCCCcchhhhhHHHHHHhCCeEEEcccCccccCCCCCCCCCCCcchhhhc-CCCCCcc
Q 022968 167 SADTIRRAHAV-HPITAVQMEYSLWTREIEDDIIPLCRELGIGIVAYSPLGRGFFAGKAVVESLPSESILAM-HPRFSGE 244 (289)
Q Consensus 167 ~~~~l~~~~~~-~~~~~~q~~~~~~~~~~~~~~~~~~~~~gi~v~a~~pl~~G~L~~~~~~~~~~~~~~~~~-~~~~~~~ 244 (289)
+++++.++++. .+++++|.+||+++++.+.+++++|+++||++++|+||++|+|++++... ..+.+.. .+.+..+
T Consensus 159 ~~~~i~~a~~~~~~~~~~Q~~ynl~~R~~e~~l~~~~~~~gi~~~~~spla~G~Ltgk~~~~---~~~~r~~~~~~~~~~ 235 (316)
T COG0667 159 SAEQIAEALAVAAPIDSLQPEYNLLERDAEKELLPLCREEGIGLLAYSPLASGLLTGKYLPG---PEGSRASELPRFQRE 235 (316)
T ss_pred CHHHHHHHHHhcCCceeecccCccccccchhHHHHHHHHcCCeEEEecCccccccCCCcCCC---cchhhccccccchhh
Confidence 99999999998 59999999999999877777999999999999999999999999996543 2222222 2556666
Q ss_pred chHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHhCCCCeEeecCCC
Q 022968 245 NLEKNKLLYTRLETLAAKYGCTTPQLALAWLLHQGDDIVPIPGIY 289 (289)
Q Consensus 245 ~~~~~~~~~~~l~~ia~~~g~s~~q~al~w~l~~~~v~~~i~g~~ 289 (289)
..++.....+.++++|+++|+|++|+||+|++++|.+++||+|++
T Consensus 236 ~~~~~~~~~~~l~~~a~~~g~t~aq~ALawvl~~~~v~~~I~Ga~ 280 (316)
T COG0667 236 LTERGLAILRALEELAKELGATPAQVALAWVLAQPGVTSPIVGAS 280 (316)
T ss_pred hhHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHhCCCCceEeecCC
Confidence 788899999999999999999999999999999999999999986
No 2
>KOG1575 consensus Voltage-gated shaker-like K+ channel, subunit beta/KCNAB [Energy production and conversion]
Probab=100.00 E-value=3.3e-62 Score=427.66 Aligned_cols=280 Identities=45% Similarity=0.712 Sum_probs=244.8
Q ss_pred CCCCCCCeeEcCCCCcccCccccccccCCCCCCCCCCHHHHHHHHHHHHHcCCCeEeCCcCcCCCChhHHHHHHHHhc--
Q 022968 4 KPQVHVPRVKLGSQGLEVSRLGFGCGGLSGIYNKPLSHEVGCSIIKETFNRGITLFDTSDVYGVDHDNEIMVGKALKQ-- 81 (289)
Q Consensus 4 ~~~~~m~~~~lg~~g~~vs~lg~G~~~~~~~~~~~~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~~g~se~~lg~~l~~-- 81 (289)
.....|+|+++|++|++||++|||||.+.. |+...+++++++++++|+|+|+||||||+.||+ +.||.++|++|++
T Consensus 7 ~~~~~~~~~~lg~~gl~Vs~lglG~m~~~~-~~~~~~~e~a~~~m~~a~e~Gin~fDtAe~Yg~-~~~E~llg~~i~~~~ 84 (336)
T KOG1575|consen 7 STELGMLRRKLGNSGLKVSPLGLGCMGWTT-FGGQIDKEEAFELLDHAYEAGINFFDTAEVYGN-GQSEELLGEFIKSRG 84 (336)
T ss_pred cchhcceeeeccCCCceecceeecceeeec-cccCCCHHHHHHHHHHHHHcCCCEEehhhhcCC-cccHHHHHHHHHhcC
Confidence 345569999999999999999999985544 444479999999999999999999999999998 9999999999998
Q ss_pred CCCCCEEEEecccccccCCcccCCCCCHHHHHHHHHHHHHHcCCCcccEEeecCCCCCCCHHHHHHHHHHHHHcCcccee
Q 022968 82 LPRDKIQLATKFGCFMLDGVSIGVKGSPEYVRKCCEASLKRLDVDYIDLYYQHRVDTSVSIEDTMGELKKLVEEGKIKYI 161 (289)
Q Consensus 82 ~~R~~~~I~tK~~~~~~~~~~~~~~~~~~~i~~~~~~sL~~L~~~~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~i 161 (289)
.+|++++|+||++.... .......+...+.+.++.||+||+++|||+||+||+|+..+.++++++|.+++++|+|+||
T Consensus 85 ~~R~~vviaTK~~~~~~--~~~~~G~~~~~i~~~~~~s~~rl~~~~IDl~q~Hr~D~~~piee~m~aL~~lve~Gki~yi 162 (336)
T KOG1575|consen 85 WRRDKVVIATKFGFDYG--GETPRGLSRKHIIEGVRDSLRRLQTDYIDLLQVHRWDPMVPIEETMRALTDLVEQGKIRYW 162 (336)
T ss_pred CcCCcEEEEEEEeccCC--CcCCCCCcHHHHHHHHHHHHHhcCCCeeEEEEEcccCCCCCHHHHHHHHHHHHhcCceEEE
Confidence 67999999999987652 1223456788999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCHHHHHHHHccCC--ceEEeccCCCCCcc-hhhhhHHHHHHhCCeEEEcccCccccCCCCCCC-CCCCcchhhhc
Q 022968 162 GLSEASADTIRRAHAVHP--ITAVQMEYSLWTRE-IEDDIIPLCRELGIGIVAYSPLGRGFFAGKAVV-ESLPSESILAM 237 (289)
Q Consensus 162 Gvs~~~~~~l~~~~~~~~--~~~~q~~~~~~~~~-~~~~~~~~~~~~gi~v~a~~pl~~G~L~~~~~~-~~~~~~~~~~~ 237 (289)
|+|+++++++.+++...+ +.++|++||++.++ .+.++++.|++.||++++|+||++|+||+++.. ++.+..+.+..
T Consensus 163 GlSe~sa~~I~~a~~~~~~p~~s~Q~eysl~~Rd~ee~~i~~~c~~~Gi~li~ysPL~~G~Ltgk~~~~e~~~~~~~~~~ 242 (336)
T KOG1575|consen 163 GLSEWSAEEIREAHAVAPIPIVAVQVEYSLLSRDKEERGIIPLCRELGIGLIAWSPLGRGLLTGKYKLGEDSRNGDKRFQ 242 (336)
T ss_pred EeccCCHHHHHHHHHhcCCCceEeeeechhhhcchhhhhHHHHHHHcCcceEEecccccceeccCccccccccccccccc
Confidence 999999999999998876 99999999999998 446699999999999999999999999999543 44444443222
Q ss_pred ----CCCCCccchHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHhCCCCeEeecCCC
Q 022968 238 ----HPRFSGENLEKNKLLYTRLETLAAKYGCTTPQLALAWLLHQGDDIVPIPGIY 289 (289)
Q Consensus 238 ----~~~~~~~~~~~~~~~~~~l~~ia~~~g~s~~q~al~w~l~~~~v~~~i~g~~ 289 (289)
.+.+... +..+..++++.++|+++|+|++|+||+|+++++.+++||||++
T Consensus 243 ~~~~~~~~~~~--~~~~~~~~~~~~iA~k~g~T~~qlALawv~~~~~v~~pIpG~s 296 (336)
T KOG1575|consen 243 FLGLSPQTEEG--DKQKPILEALSKIAEKHGCTVPQLALAWVLSNGKVSSPIPGAS 296 (336)
T ss_pred ccccccccchh--hhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhCCCEEecCCCC
Confidence 2222222 5678889999999999999999999999999999999999986
No 3
>TIGR01293 Kv_beta voltage-dependent potassium channel beta subunit, animal. Plant beta subunits and their closely related bacterial homologs (in Deinococcus radiudurans, Xylella fastidiosa, etc.) appear more closely related to each other than to animal forms. However, the bacterial species lack convincing counterparts the Kv alpha subunit and the Kv beta homolog may serve as an enzyme. Cutoffs are set for this model such that yeast and plant forms and bacterial close homologs score between trusted and noise cutoffs.
Probab=100.00 E-value=3.9e-58 Score=411.67 Aligned_cols=272 Identities=29% Similarity=0.451 Sum_probs=225.2
Q ss_pred eeEcCCCCcccCccccccccCCCCCCCCCCHHHHHHHHHHHHHcCCCeEeCCcCcCCCChhHHHHHHHHhc--CCCCCEE
Q 022968 11 RVKLGSQGLEVSRLGFGCGGLSGIYNKPLSHEVGCSIIKETFNRGITLFDTSDVYGVDHDNEIMVGKALKQ--LPRDKIQ 88 (289)
Q Consensus 11 ~~~lg~~g~~vs~lg~G~~~~~~~~~~~~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~~g~se~~lg~~l~~--~~R~~~~ 88 (289)
||+||++|++||+||||||++ +|...+.+++.++|+.|+++|||+||||+.||. |.||+++|++|++ .+|++++
T Consensus 1 ~r~lg~tg~~vs~lglGt~~~---~g~~~~~~~a~~~l~~al~~Gi~~~DTA~~Yg~-g~sE~~lG~~l~~~~~~R~~~~ 76 (317)
T TIGR01293 1 YRNLGKSGLRVSCLGLGTWVT---FGGQISDEMAEQLLTLAYENGINLFDTAEVYAA-GKAEVVLGNILKKKGWRRSSYV 76 (317)
T ss_pred CcccCCCCCeecceeecCCcc---CCCCCCHHHHHHHHHHHHHcCCCeEECccccCC-CccHHHHHHHHHhcCCCcccEE
Confidence 588999999999999999974 233457889999999999999999999999997 8899999999985 3699999
Q ss_pred EEecccccccCCcccCCCCCHHHHHHHHHHHHHHcCCCcccEEeecCCCCCCCHHHHHHHHHHHHHcCccceeecCCCCH
Q 022968 89 LATKFGCFMLDGVSIGVKGSPEYVRKCCEASLKRLDVDYIDLYYQHRVDTSVSIEDTMGELKKLVEEGKIKYIGLSEASA 168 (289)
Q Consensus 89 I~tK~~~~~~~~~~~~~~~~~~~i~~~~~~sL~~L~~~~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~iGvs~~~~ 168 (289)
|+||++..... ....+.+++.+++++++||+||||||||+|++|||++..+++++|++|++|+++||||+|||||++.
T Consensus 77 iaTK~~~~~~~--~~~~~~~~~~i~~~~~~SL~rL~td~iDl~~lH~~~~~~~~~e~~~aL~~l~~~G~ir~iGvSn~~~ 154 (317)
T TIGR01293 77 ITTKIFWGGKA--ETERGLSRKHIIEGLKASLERLQLEYVDIVFANRPDPNTPMEETVRAMTYVINQGMAMYWGTSRWSS 154 (317)
T ss_pred EEeeeccCCCC--CCCCCCCHHHHHHHHHHHHHHhCCCcEeEEEeccCCCCCCHHHHHHHHHHHHHcCCeeEEEecCCCH
Confidence 99998642111 1113468999999999999999999999999999998888999999999999999999999999999
Q ss_pred HHHHHHHcc------CCceEEeccCCCCCcch-hhhhHHHHHHhCCeEEEcccCccccCCCCCCCCCCCcchhhhc--CC
Q 022968 169 DTIRRAHAV------HPITAVQMEYSLWTREI-EDDIIPLCRELGIGIVAYSPLGRGFFAGKAVVESLPSESILAM--HP 239 (289)
Q Consensus 169 ~~l~~~~~~------~~~~~~q~~~~~~~~~~-~~~~~~~~~~~gi~v~a~~pl~~G~L~~~~~~~~~~~~~~~~~--~~ 239 (289)
+++.+++.. .+++++|++||++++.. +.+++++|+++||++++|+||++|+|++++... ++....... .+
T Consensus 155 ~~l~~~~~~~~~~~~~~~~~~Q~~~~l~~r~~~e~~l~~~~~~~gi~v~a~spl~~G~Ltg~~~~~-~~~~~~~~~~~~~ 233 (317)
T TIGR01293 155 MEIMEAYSVARQFNLIPPICEQAEYHMFQREKVEVQLPELYHKIGVGAMTWSPLACGLVSGKYDSG-IPPYSRATLKGYQ 233 (317)
T ss_pred HHHHHHHHHHHHcCCCCcceeccccChHhcchhHHHHHHHHHHcCCeEEEeccccccccCCCCCCC-CCCcccccccccc
Confidence 998776432 46789999999999863 568999999999999999999999999985432 222111100 00
Q ss_pred CC----CccchHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHhCCCCeEeecCCC
Q 022968 240 RF----SGENLEKNKLLYTRLETLAAKYGCTTPQLALAWLLHQGDDIVPIPGIY 289 (289)
Q Consensus 240 ~~----~~~~~~~~~~~~~~l~~ia~~~g~s~~q~al~w~l~~~~v~~~i~g~~ 289 (289)
++ ...........++.++++|+++|+|++|+||+|++++|.+++||+|++
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~l~~ia~~~g~s~aqlal~w~l~~~~v~~~i~G~~ 287 (317)
T TIGR01293 234 WLKDKILSEEGRRQQARLKDLQAIAERLGCTLPQLAIAWCLRNEGVSSVLLGAS 287 (317)
T ss_pred hhhhhhcchhhHHHHHHHHHHHHHHHHHCcCHHHHHHHHHhcCCCCeEEEeCCC
Confidence 11 112223456677889999999999999999999999999999999986
No 4
>PRK10625 tas putative aldo-keto reductase; Provisional
Probab=100.00 E-value=1.2e-57 Score=413.26 Aligned_cols=277 Identities=26% Similarity=0.354 Sum_probs=225.8
Q ss_pred CCeeEcCCCCcccCccccccccCCCCCCCCCCHHHHHHHHHHHHHcCCCeEeCCcCcCC------CChhHHHHHHHHhc-
Q 022968 9 VPRVKLGSQGLEVSRLGFGCGGLSGIYNKPLSHEVGCSIIKETFNRGITLFDTSDVYGV------DHDNEIMVGKALKQ- 81 (289)
Q Consensus 9 m~~~~lg~~g~~vs~lg~G~~~~~~~~~~~~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~------~g~se~~lg~~l~~- 81 (289)
|+||+||++|++||+||||||++|+ ..+.+++.++|+.|+++|||+||||+.||. .|.||..+|++|++
T Consensus 1 m~~r~lg~t~~~vs~iglGt~~~g~----~~~~~~a~~~l~~al~~Gi~~~DTA~~Yg~~~~~~~~g~sE~~iG~aL~~~ 76 (346)
T PRK10625 1 MQYHRIPHSSLEVSTLGLGTMTFGE----QNSEADAHAQLDYAVAQGINLIDVAEMYPVPPRPETQGLTETYIGNWLAKR 76 (346)
T ss_pred CCceecCCCCCccccEeEeccccCC----CCCHHHHHHHHHHHHHcCCCEEECccccCCCcCCCCCCchHHHHHHHHhhc
Confidence 7899999999999999999999864 347889999999999999999999999973 27799999999985
Q ss_pred CCCCCEEEEecccccccC-Cc--ccCCCCCHHHHHHHHHHHHHHcCCCcccEEeecCCCC-----------------CCC
Q 022968 82 LPRDKIQLATKFGCFMLD-GV--SIGVKGSPEYVRKCCEASLKRLDVDYIDLYYQHRVDT-----------------SVS 141 (289)
Q Consensus 82 ~~R~~~~I~tK~~~~~~~-~~--~~~~~~~~~~i~~~~~~sL~~L~~~~iDl~~lh~~~~-----------------~~~ 141 (289)
..|++++|+||++..... +. ....+.+++.+++++++||+|||+||||+|++|||+. ..+
T Consensus 77 ~~R~~v~i~TK~~~~~~~~~~~~~~~~~~s~~~i~~~~e~SL~rL~~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~ 156 (346)
T PRK10625 77 GSREKLIIASKVSGPSRNNDKGIRPNQALDRKNIREALHDSLKRLQTDYLDLYQVHWPQRPTNCFGKLGYSWTDSAPAVS 156 (346)
T ss_pred CCcceEEEEcccccCCcCCCCCcCCCCCCCHHHHHHHHHHHHHHhCCCeEeEEEeeccCcccccccccccccccccCCCC
Confidence 369999999998532110 00 0012468999999999999999999999999999964 246
Q ss_pred HHHHHHHHHHHHHcCccceeecCCCCHHHHHHHHc------cCCceEEeccCCCCCcchhhhhHHHHHHhCCeEEEcccC
Q 022968 142 IEDTMGELKKLVEEGKIKYIGLSEASADTIRRAHA------VHPITAVQMEYSLWTREIEDDIIPLCRELGIGIVAYSPL 215 (289)
Q Consensus 142 ~~~~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~~~------~~~~~~~q~~~~~~~~~~~~~~~~~~~~~gi~v~a~~pl 215 (289)
++++|++|++|+++||||+||||||+.+++++++. ...++.+|++||++++..+.+++++|+++||++++|+||
T Consensus 157 ~~e~~~aL~~l~~~GkIr~iGvSn~~~~~l~~~~~~~~~~~~~~~~~~q~~y~l~~r~~~~~ll~~~~~~gi~via~spL 236 (346)
T PRK10625 157 LLETLDALAEQQRAGKIRYIGVSNETAFGVMRYLHLAEKHDLPRIVTIQNPYSLLNRSFEVGLAEVSQYEGVELLAYSCL 236 (346)
T ss_pred HHHHHHHHHHHHHCCCeEEEEecCCCHHHHHHHHHHHHHcCCCCcEEecCCCCcccccchhHHHHHHHHcCCeEEEeccc
Confidence 78999999999999999999999999998877543 135788999999999876668999999999999999999
Q ss_pred ccccCCCCCCCCCCCcchhhhcCCCCCccchHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHhCCCCeEeecCCC
Q 022968 216 GRGFFAGKAVVESLPSESILAMHPRFSGENLEKNKLLYTRLETLAAKYGCTTPQLALAWLLHQGDDIVPIPGIY 289 (289)
Q Consensus 216 ~~G~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ia~~~g~s~~q~al~w~l~~~~v~~~i~g~~ 289 (289)
++|+|++++.....+..........|.....+......+.++++|+++|+|++|+||+|++++|.|++||+|++
T Consensus 237 ~~G~Ltg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~~g~t~aqval~w~l~~~~v~~~I~G~~ 310 (346)
T PRK10625 237 AFGTLTGKYLNGAKPAGARNTLFSRFTRYSGEQTQKAVAAYVDIAKRHGLDPAQMALAFVRRQPFVASTLLGAT 310 (346)
T ss_pred cCeeccCCCCCCCCCCCcccccccccccccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHhCCCCeeEEeCCC
Confidence 99999998533222221110001112111224456778899999999999999999999999999999999986
No 5
>PRK09912 L-glyceraldehyde 3-phosphate reductase; Provisional
Probab=100.00 E-value=1.2e-57 Score=412.73 Aligned_cols=278 Identities=28% Similarity=0.467 Sum_probs=227.1
Q ss_pred CCCCeeEcCCCCcccCccccccccCCCCCCCCCCHHHHHHHHHHHHHcCCCeEeCCcCcCC-CChhHHHHHHHHhcC---
Q 022968 7 VHVPRVKLGSQGLEVSRLGFGCGGLSGIYNKPLSHEVGCSIIKETFNRGITLFDTSDVYGV-DHDNEIMVGKALKQL--- 82 (289)
Q Consensus 7 ~~m~~~~lg~~g~~vs~lg~G~~~~~~~~~~~~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~-~g~se~~lg~~l~~~--- 82 (289)
-.|+||+||++|++||+||||||+. +|...+.+++.++|++|+++|||+||||+.||+ .|.||+.+|++|++.
T Consensus 11 ~~m~~r~lg~tg~~vs~lglG~~~~---~g~~~~~~~~~~~l~~A~~~Gin~~DTA~~YG~~~g~sE~~lG~~l~~~~~~ 87 (346)
T PRK09912 11 GQMQYRYCGKSGLRLPALSLGLWHN---FGHVNALESQRAILRKAFDLGITHFDLANNYGPPPGSAEENFGRLLREDFAA 87 (346)
T ss_pred CCcceeecCCCCcccccccccCccc---cCCCCCHHHHHHHHHHHHHCCCCEEEChhhhCCCCCCcHHHHHHHHHhcccC
Confidence 3499999999999999999999963 333346678899999999999999999999993 378999999999862
Q ss_pred CCCCEEEEecccccccCCcccCCCCCHHHHHHHHHHHHHHcCCCcccEEeecCCCCCCCHHHHHHHHHHHHHcCccceee
Q 022968 83 PRDKIQLATKFGCFMLDGVSIGVKGSPEYVRKCCEASLKRLDVDYIDLYYQHRVDTSVSIEDTMGELKKLVEEGKIKYIG 162 (289)
Q Consensus 83 ~R~~~~I~tK~~~~~~~~~~~~~~~~~~~i~~~~~~sL~~L~~~~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~iG 162 (289)
.|++++|+||++.....+ ....+.+++.+++++++||+|||+||||+|++|+|++..+.+++|++|++|+++||||+||
T Consensus 88 ~Rd~~~I~TK~g~~~~~~-~~~~~~s~~~i~~~~e~SL~rLg~d~iDl~~lH~~~~~~~~~e~~~al~~l~~~GkIr~iG 166 (346)
T PRK09912 88 YRDELIISTKAGYDMWPG-PYGSGGSRKYLLASLDQSLKRMGLEYVDIFYSHRVDENTPMEETASALAHAVQSGKALYVG 166 (346)
T ss_pred CCCeEEEEEEecccCCCC-cCCCCCCHHHHHHHHHHHHHHHCCCcEEEEEeCCCCCCCCHHHHHHHHHHHHHcCCeeEEE
Confidence 599999999997531111 1123468999999999999999999999999999998888999999999999999999999
Q ss_pred cCCCCHHHHHHHHcc-----CCceEEeccCCCCCcchh-hhhHHHHHHhCCeEEEcccCccccCCCCCCCCCCCcchhhh
Q 022968 163 LSEASADTIRRAHAV-----HPITAVQMEYSLWTREIE-DDIIPLCRELGIGIVAYSPLGRGFFAGKAVVESLPSESILA 236 (289)
Q Consensus 163 vs~~~~~~l~~~~~~-----~~~~~~q~~~~~~~~~~~-~~~~~~~~~~gi~v~a~~pl~~G~L~~~~~~~~~~~~~~~~ 236 (289)
||||++++++++.+. .+++++|++||++++..+ .+++++|+++||++++|+||++|+|++++.... +......
T Consensus 167 vSn~~~~~~~~~~~~~~~~~~~~~~~Q~~ynll~~~~~~~~ll~~~~~~gI~via~spl~~G~Lt~~~~~~~-~~~~~~~ 245 (346)
T PRK09912 167 ISSYSPERTQKMVELLREWKIPLLIHQPSYNLLNRWVDKSGLLDTLQNNGVGCIAFTPLAQGLLTGKYLNGI-PQDSRMH 245 (346)
T ss_pred ecCCCHHHHHHHHHHHHhcCCCcEEeeccCCceecccchhhHHHHHHHcCceEEEehhhcCccccCCCCCCC-CCCcccc
Confidence 999999988765442 367899999999998644 479999999999999999999999999853321 1111000
Q ss_pred ----cCCCCCccc-hHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHhCCCCeEeecCCC
Q 022968 237 ----MHPRFSGEN-LEKNKLLYTRLETLAAKYGCTTPQLALAWLLHQGDDIVPIPGIY 289 (289)
Q Consensus 237 ----~~~~~~~~~-~~~~~~~~~~l~~ia~~~g~s~~q~al~w~l~~~~v~~~i~g~~ 289 (289)
..+.|.... .+..+...+.++++|+++|+|++|+||+|++++|.|++||+|++
T Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~g~t~aq~AL~w~l~~~~v~~~i~G~~ 303 (346)
T PRK09912 246 REGNKVRGLTPKMLTEANLNSLRLLNEMAQQRGQSMAQMALSWLLKDERVTSVLIGAS 303 (346)
T ss_pred ccccchhhhchhhccHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHhCCCCeEEEeCCC
Confidence 001111111 13456677899999999999999999999999999999999986
No 6
>PLN02587 L-galactose dehydrogenase
Probab=100.00 E-value=2.5e-56 Score=399.57 Aligned_cols=257 Identities=30% Similarity=0.490 Sum_probs=218.3
Q ss_pred eeEcCCCCcccCccccccccCCCCCCCCCCHHHHHHHHHHHHHcCCCeEeCCcCcCCCChhHHHHHHHHhc--CCCCCEE
Q 022968 11 RVKLGSQGLEVSRLGFGCGGLSGIYNKPLSHEVGCSIIKETFNRGITLFDTSDVYGVDHDNEIMVGKALKQ--LPRDKIQ 88 (289)
Q Consensus 11 ~~~lg~~g~~vs~lg~G~~~~~~~~~~~~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~~g~se~~lg~~l~~--~~R~~~~ 88 (289)
||+||+||++||.||||||++|+.|+. ++.+++.+++++|++.|||+||||+.||+ |.+|..+|++|++ .+|++++
T Consensus 1 ~r~lg~t~~~vs~lglG~~~~g~~~~~-~~~~~~~~~l~~A~~~Gin~~DTA~~Yg~-g~sE~~lG~al~~~~~~R~~v~ 78 (314)
T PLN02587 1 LRELGSTGLKVSSVGFGASPLGSVFGP-VSEEDAIASVREAFRLGINFFDTSPYYGG-TLSEKVLGKALKALGIPREKYV 78 (314)
T ss_pred CCcCCCCCCcccCcccccccccCCCCC-CCHHHHHHHHHHHHHcCCCEEECcCccCC-CchHHHHHHHHHhCCCCcceEE
Confidence 689999999999999999999876654 57889999999999999999999999998 9999999999997 4699999
Q ss_pred EEecccccccCCcccCCCCCHHHHHHHHHHHHHHcCCCcccEEeecCCCCC---CCHHHHHHHHHHHHHcCccceeecCC
Q 022968 89 LATKFGCFMLDGVSIGVKGSPEYVRKCCEASLKRLDVDYIDLYYQHRVDTS---VSIEDTMGELKKLVEEGKIKYIGLSE 165 (289)
Q Consensus 89 I~tK~~~~~~~~~~~~~~~~~~~i~~~~~~sL~~L~~~~iDl~~lh~~~~~---~~~~~~~~~l~~l~~~G~ir~iGvs~ 165 (289)
|+||++.... ..+.+++.+++++++||++||+||||+|+||+|+.. .+++++|++|++|+++||||+||+||
T Consensus 79 I~TK~~~~~~-----~~~~~~~~i~~~~e~SL~rL~~d~iDl~~lH~~~~~~~~~~~~~~~~~l~~l~~~Gkir~iGvSn 153 (314)
T PLN02587 79 VSTKCGRYGE-----GFDFSAERVTKSVDESLARLQLDYVDILHCHDIEFGSLDQIVNETIPALQKLKESGKVRFIGITG 153 (314)
T ss_pred EEeccccCCC-----CCCCCHHHHHHHHHHHHHHhCCCCeeEEEecCCCCcchhhhHHHHHHHHHHHHHCCCeEEEEecC
Confidence 9999974321 124689999999999999999999999999999642 34678999999999999999999999
Q ss_pred CCHHHHHHHHcc---C--CceEEeccCCCCCcchhhhhHHHHHHhCCeEEEcccCccccCCCCCCCCCCCcchhhhcCCC
Q 022968 166 ASADTIRRAHAV---H--PITAVQMEYSLWTREIEDDIIPLCRELGIGIVAYSPLGRGFFAGKAVVESLPSESILAMHPR 240 (289)
Q Consensus 166 ~~~~~l~~~~~~---~--~~~~~q~~~~~~~~~~~~~~~~~~~~~gi~v~a~~pl~~G~L~~~~~~~~~~~~~~~~~~~~ 240 (289)
++++++..+... . .+..+|+.||+.++.. .+++++|+++||++++|+||++|+|+++....
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~ll~~~~~~gi~v~a~spl~~G~L~~~~~~~------------- 219 (314)
T PLN02587 154 LPLAIFTYVLDRVPPGTVDVILSYCHYSLNDSSL-EDLLPYLKSKGVGVISASPLAMGLLTENGPPE------------- 219 (314)
T ss_pred CCHHHHHHHHHhhhcCCCCeEEeccccCcchhhH-HHHHHHHHHcCceEEEechhhccccCCCCCCC-------------
Confidence 999888776543 2 2333578899877644 58999999999999999999999999863211
Q ss_pred CCccchHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHhCCCCeEeecCCC
Q 022968 241 FSGENLEKNKLLYTRLETLAAKYGCTTPQLALAWLLHQGDDIVPIPGIY 289 (289)
Q Consensus 241 ~~~~~~~~~~~~~~~l~~ia~~~g~s~~q~al~w~l~~~~v~~~i~g~~ 289 (289)
+.. ..+......+.++++|+++|+|++|+||+|++++|.|++||+|++
T Consensus 220 ~~~-~~~~~~~~~~~l~~~a~~~~~s~aq~al~~~l~~~~v~~~i~G~~ 267 (314)
T PLN02587 220 WHP-APPELKSACAAAATHCKEKGKNISKLALQYSLSNKDISTTLVGMN 267 (314)
T ss_pred CCC-CCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHhCCCCeeEEecCC
Confidence 000 113455667889999999999999999999999999999999986
No 7
>COG0656 ARA1 Aldo/keto reductases, related to diketogulonate reductase [General function prediction only]
Probab=100.00 E-value=1.2e-56 Score=385.73 Aligned_cols=226 Identities=34% Similarity=0.582 Sum_probs=199.6
Q ss_pred CCeeEcCCCCcccCccccccccCCCCCCCCCCHHHHHHHHHHHHHcCCCeEeCCcCcCCCChhHHHHHHHHhc--CCCCC
Q 022968 9 VPRVKLGSQGLEVSRLGFGCGGLSGIYNKPLSHEVGCSIIKETFNRGITLFDTSDVYGVDHDNEIMVGKALKQ--LPRDK 86 (289)
Q Consensus 9 m~~~~lg~~g~~vs~lg~G~~~~~~~~~~~~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~~g~se~~lg~~l~~--~~R~~ 86 (289)
+++.+| ++|.+||.||||||.+++ .+.+.+.+.+|++.|+|+||||..|| ||+.+|+++++ .+|++
T Consensus 3 ~~~~~l-~~g~~iP~iGlGt~~~~~-------~~~~~~av~~Al~~Gyr~IDTA~~Yg----nE~~VG~aI~~s~v~Ree 70 (280)
T COG0656 3 KTKVTL-NNGVEIPAIGLGTWQIGD-------DEWAVRAVRAALELGYRLIDTAEIYG----NEEEVGEAIKESGVPREE 70 (280)
T ss_pred Cceeec-CCCCcccCcceEeeecCC-------chhHHHHHHHHHHhCcceEecHhHhc----CHHHHHHHHHhcCCCHHH
Confidence 455677 667789999999998753 23389999999999999999999999 79999999998 68999
Q ss_pred EEEEecccccccCCcccCCCCCHHHHHHHHHHHHHHcCCCcccEEeecCCCCC--CCHHHHHHHHHHHHHcCccceeecC
Q 022968 87 IQLATKFGCFMLDGVSIGVKGSPEYVRKCCEASLKRLDVDYIDLYYQHRVDTS--VSIEDTMGELKKLVEEGKIKYIGLS 164 (289)
Q Consensus 87 ~~I~tK~~~~~~~~~~~~~~~~~~~i~~~~~~sL~~L~~~~iDl~~lh~~~~~--~~~~~~~~~l~~l~~~G~ir~iGvs 164 (289)
+||+||++... .+++.+.+++++||++||+||+|||+||||.+. ..+.++|++||+++++|+||+||||
T Consensus 71 lFittKvw~~~---------~~~~~~~~a~e~Sl~rLg~dyvDLyLiHwP~~~~~~~~~etw~alE~l~~~G~ir~IGVS 141 (280)
T COG0656 71 LFITTKVWPSD---------LGYDETLKALEASLKRLGLDYVDLYLIHWPVPNKYVVIEETWKALEELVDEGLIRAIGVS 141 (280)
T ss_pred eEEEeecCCcc---------CCcchHHHHHHHHHHHhCCCceeEEEECCCCCccCccHHHHHHHHHHHHhcCCccEEEee
Confidence 99999997653 567889999999999999999999999999763 3368999999999999999999999
Q ss_pred CCCHHHHHHHHcc--CCceEEeccCCCCCcchhhhhHHHHHHhCCeEEEcccCcccc-CCCCCCCCCCCcchhhhcCCCC
Q 022968 165 EASADTIRRAHAV--HPITAVQMEYSLWTREIEDDIIPLCRELGIGIVAYSPLGRGF-FAGKAVVESLPSESILAMHPRF 241 (289)
Q Consensus 165 ~~~~~~l~~~~~~--~~~~~~q~~~~~~~~~~~~~~~~~~~~~gi~v~a~~pl~~G~-L~~~~~~~~~~~~~~~~~~~~~ 241 (289)
||+.++|+++++. ..|+++|++||++.++. +++++|+++||.++|||||++|. +...
T Consensus 142 NF~~~~L~~l~~~~~~~p~~NQIe~hp~~~q~--el~~~~~~~gI~v~AysPL~~g~~l~~~------------------ 201 (280)
T COG0656 142 NFGVEHLEELLSLAKVKPAVNQIEYHPYLRQP--ELLPFCQRHGIAVEAYSPLAKGGKLLDN------------------ 201 (280)
T ss_pred CCCHHHHHHHHHhcCCCCceEEEEeccCCCcH--HHHHHHHHcCCEEEEECCcccccccccC------------------
Confidence 9999999999876 45899999999999974 59999999999999999999643 2110
Q ss_pred CccchHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHhCCCCeEeecCCC
Q 022968 242 SGENLEKNKLLYTRLETLAAKYGCTTPQLALAWLLHQGDDIVPIPGIY 289 (289)
Q Consensus 242 ~~~~~~~~~~~~~~l~~ia~~~g~s~~q~al~w~l~~~~v~~~i~g~~ 289 (289)
+.+.+||++||.|++|++|+|+++++ ++|||.++
T Consensus 202 ------------~~l~~Ia~k~g~t~AQv~L~W~i~~g--v~~Ipks~ 235 (280)
T COG0656 202 ------------PVLAEIAKKYGKTPAQVALRWHIQRG--VIVIPKST 235 (280)
T ss_pred ------------hHHHHHHHHhCCCHHHHHHHHHHhCC--cEEecCCC
Confidence 48999999999999999999999999 58888874
No 8
>cd06660 Aldo_ket_red Aldo-keto reductases (AKRs) are a superfamily of soluble NAD(P)(H) oxidoreductases whose chief purpose is to reduce aldehydes and ketones to primary and secondary alcohols. AKRs are present in all phyla and are of importance to both health and industrial applications. Members have very distinct functions and include the prokaryotic 2,5-diketo-D-gluconic acid reductases and beta-keto ester reductases, the eukaryotic aldose reductases, aldehyde reductases, hydroxysteroid dehydrogenases, steroid 5beta-reductases, potassium channel beta-subunits and aflatoxin aldehyde reductases, among others.
Probab=100.00 E-value=5.3e-54 Score=379.81 Aligned_cols=254 Identities=43% Similarity=0.680 Sum_probs=224.4
Q ss_pred eeEcCCCCcccCccccccccCCCCCCCCCCHHHHHHHHHHHHHcCCCeEeCCcCcCCCChhHHHHHHHHhcCC-CCCEEE
Q 022968 11 RVKLGSQGLEVSRLGFGCGGLSGIYNKPLSHEVGCSIIKETFNRGITLFDTSDVYGVDHDNEIMVGKALKQLP-RDKIQL 89 (289)
Q Consensus 11 ~~~lg~~g~~vs~lg~G~~~~~~~~~~~~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~~g~se~~lg~~l~~~~-R~~~~I 89 (289)
+++||++|++||+||||||.++..+ .+.+++.++++.|++.|||+||||+.||+ |.+|+.+|++|++.. |++++|
T Consensus 1 ~r~lg~tg~~vs~lg~G~~~~~~~~---~~~~~~~~~l~~A~~~Gi~~iDTA~~Yg~-g~sE~~lG~al~~~~~R~~~~i 76 (285)
T cd06660 1 YRTLGKTGLKVSRLGLGTWQLGGGY---VDEEEAAAAVRAALDAGINFIDTADVYGD-GESEELLGEALKERGPREEVFI 76 (285)
T ss_pred CcccCCCCceecCcceeccccCCCC---CCHHHHHHHHHHHHHcCCCeEECccccCC-CCCHHHHHHHHhccCCcCcEEE
Confidence 5789999999999999999987644 47889999999999999999999999998 899999999999854 999999
Q ss_pred EecccccccCCcccCCCCCHHHHHHHHHHHHHHcCCCcccEEeecCCCCCCC-HHHHHHHHHHHHHcCccceeecCCCCH
Q 022968 90 ATKFGCFMLDGVSIGVKGSPEYVRKCCEASLKRLDVDYIDLYYQHRVDTSVS-IEDTMGELKKLVEEGKIKYIGLSEASA 168 (289)
Q Consensus 90 ~tK~~~~~~~~~~~~~~~~~~~i~~~~~~sL~~L~~~~iDl~~lh~~~~~~~-~~~~~~~l~~l~~~G~ir~iGvs~~~~ 168 (289)
+||++..... .++.+++.+++++++||++|+++|||+|+||+|+.... ..++|++|++++++|+||+|||||++.
T Consensus 77 ~tK~~~~~~~----~~~~~~~~~~~~l~~sL~~L~~~~iDl~~lh~~~~~~~~~~~~~~~l~~l~~~G~ir~iGvS~~~~ 152 (285)
T cd06660 77 ATKVGPRPGD----GRDLSPEHIRRAVEESLKRLGTDYIDLYLLHWPDPDTPDIEETLRALEELVKEGKIRAIGVSNFSA 152 (285)
T ss_pred EeeecCCCCC----CCCCCHHHHHHHHHHHHHHhCCCceeEEEecCCCCCCCCHHHHHHHHHHHHHcCCccEEEeeCCCH
Confidence 9999865421 14568999999999999999999999999999987665 789999999999999999999999999
Q ss_pred HHHHHHHcc--CCceEEeccCCCCCcchhhhhHHHHHHhCCeEEEcccCccccCCCCCCCCCCCcchhhhcCCCCCccch
Q 022968 169 DTIRRAHAV--HPITAVQMEYSLWTREIEDDIIPLCRELGIGIVAYSPLGRGFFAGKAVVESLPSESILAMHPRFSGENL 246 (289)
Q Consensus 169 ~~l~~~~~~--~~~~~~q~~~~~~~~~~~~~~~~~~~~~gi~v~a~~pl~~G~L~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (289)
+.+.++... .+|+++|++||++++....+++++|+++||++++|+||++|.++++........
T Consensus 153 ~~l~~~~~~~~~~~~~~q~~~n~~~~~~~~~~~~~~~~~gi~v~~~~~l~~g~l~~~~~~~~~~~--------------- 217 (285)
T cd06660 153 EQLEEALAAAGVPPAVNQVEYNLLDRQAEEELLPYCREHGIGVIAYSPLAGGLLTGKYLPGAPPP--------------- 217 (285)
T ss_pred HHHHHHHHhhCCCceEEecccCcccCchHHHHHHHHHHcCcEEEEeccccCceecCCCCCCCCCC---------------
Confidence 999999887 899999999999999865579999999999999999999999887633211110
Q ss_pred HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHhCCCCeEeecCCC
Q 022968 247 EKNKLLYTRLETLAAKYGCTTPQLALAWLLHQGDDIVPIPGIY 289 (289)
Q Consensus 247 ~~~~~~~~~l~~ia~~~g~s~~q~al~w~l~~~~v~~~i~g~~ 289 (289)
.......+..++++++++++|+||+|++++|.+++||+|++
T Consensus 218 --~~~~~~~~~~~~~~~~~s~~q~al~~~l~~p~~~~~i~g~~ 258 (285)
T cd06660 218 --EGDLLEALKEIAEKHGVTPAQVALRWLLQQPGVTSVIPGAS 258 (285)
T ss_pred --hhhHHHHHHHHHHHhCCCHHHHHHHHHhcCCCCeEEEeCCC
Confidence 01145689999999999999999999999999999999985
No 9
>PRK10376 putative oxidoreductase; Provisional
Probab=100.00 E-value=1.6e-52 Score=370.78 Aligned_cols=243 Identities=31% Similarity=0.482 Sum_probs=208.1
Q ss_pred eEcCCCCcccCccccccccCCC--CCCCCCCHHHHHHHHHHHHHcCCCeEeCCcCcCCCChhHHHHHHHHhcCCCCCEEE
Q 022968 12 VKLGSQGLEVSRLGFGCGGLSG--IYNKPLSHEVGCSIIKETFNRGITLFDTSDVYGVDHDNEIMVGKALKQLPRDKIQL 89 (289)
Q Consensus 12 ~~lg~~g~~vs~lg~G~~~~~~--~~~~~~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~~g~se~~lg~~l~~~~R~~~~I 89 (289)
.+|+ |++||+||||||++|+ .||...+++++.++|+.|++.|||+||||+.||+ |.+|+.+|++++. .|++++|
T Consensus 10 ~~l~--g~~vs~iglG~~~lg~~~~~g~~~~~~~~~~~l~~A~~~Gin~~DTA~~Yg~-~~sE~~lg~~l~~-~R~~~~i 85 (290)
T PRK10376 10 FTLG--GRSVNRLGYGAMQLAGPGVFGPPKDRDAAIAVLREAVALGVNHIDTSDFYGP-HVTNQLIREALHP-YPDDLTI 85 (290)
T ss_pred eecC--CeeecccceeccccCCCCcCCCCCCHHHHHHHHHHHHHcCCCeEEChhhcCC-CcHHHHHHHHHhc-CCCeEEE
Confidence 3453 8999999999999975 3666567889999999999999999999999998 8899999999974 6999999
Q ss_pred EecccccccCCcccCCCCCHHHHHHHHHHHHHHcCCCcccEEeecCCC-----CCCCHHHHHHHHHHHHHcCccceeecC
Q 022968 90 ATKFGCFMLDGVSIGVKGSPEYVRKCCEASLKRLDVDYIDLYYQHRVD-----TSVSIEDTMGELKKLVEEGKIKYIGLS 164 (289)
Q Consensus 90 ~tK~~~~~~~~~~~~~~~~~~~i~~~~~~sL~~L~~~~iDl~~lh~~~-----~~~~~~~~~~~l~~l~~~G~ir~iGvs 164 (289)
+||++........+..+.+++.+++++++||+||+|||||+|++|+++ ...+++++|++|++|+++||||+||||
T Consensus 86 ~TK~g~~~~~~~~~~~~~~~~~i~~~~e~SL~rL~td~iDl~~~H~~~~~h~p~~~~~~~~~~~l~~l~~~Gkir~iGvS 165 (290)
T PRK10376 86 VTKVGARRGEDGSWLPAFSPAELRRAVHDNLRNLGLDVLDVVNLRLMGDGHGPAEGSIEEPLTVLAELQRQGLVRHIGLS 165 (290)
T ss_pred EeeecccCCCCCccCCCCCHHHHHHHHHHHHHHhCCCeEEEEEEeccCCCCCCCCCCHHHHHHHHHHHHHCCceeEEEec
Confidence 999875432211223456899999999999999999999999988742 123578999999999999999999999
Q ss_pred CCCHHHHHHHHccCCceEEeccCCCCCcchhhhhHHHHHHhCCeEEEcccCccccCCCCCCCCCCCcchhhhcCCCCCcc
Q 022968 165 EASADTIRRAHAVHPITAVQMEYSLWTREIEDDIIPLCRELGIGIVAYSPLGRGFFAGKAVVESLPSESILAMHPRFSGE 244 (289)
Q Consensus 165 ~~~~~~l~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~gi~v~a~~pl~~G~L~~~~~~~~~~~~~~~~~~~~~~~~ 244 (289)
||+.++++++.+..+++++|++||++++.. .+++++|+++||++++|+||+++..
T Consensus 166 n~~~~~l~~~~~~~~~~~~q~~~~~~~~~~-~~~~~~~~~~gi~v~a~~pL~g~~~------------------------ 220 (290)
T PRK10376 166 NVTPTQVAEARKIAEIVCVQNHYNLAHRAD-DALIDALARDGIAYVPFFPLGGFTP------------------------ 220 (290)
T ss_pred CCCHHHHHHHHhhCCeEEEecccCCCcCCh-HHHHHHHHHcCCEEEEeecCCCCCh------------------------
Confidence 999999999988889999999999998764 5799999999999999999973210
Q ss_pred chHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHhCCCCeEeecCCC
Q 022968 245 NLEKNKLLYTRLETLAAKYGCTTPQLALAWLLHQGDDIVPIPGIY 289 (289)
Q Consensus 245 ~~~~~~~~~~~l~~ia~~~g~s~~q~al~w~l~~~~v~~~i~g~~ 289 (289)
. ..+.+.++|+++|+|++|+||+|+++++.+++||+|++
T Consensus 221 -~-----~~~~l~~ia~~~~~t~aq~al~w~l~~~~~~~~i~G~~ 259 (290)
T PRK10376 221 -L-----QSSTLSDVAASLGATPMQVALAWLLQRSPNILLIPGTS 259 (290)
T ss_pred -h-----hhHHHHHHHHHhCCCHHHHHHHHHHhCCCCeeEeeCCC
Confidence 0 02578899999999999999999999987788999985
No 10
>PF00248 Aldo_ket_red: Aldo/keto reductase family; InterPro: IPR023210 The aldo-keto reductase family includes a number of related monomeric NADPH-dependent oxidoreductases, such as aldehyde reductase, aldose reductase, prostaglandin F synthase, xylose reductase, rho crystallin, and many others []. All possess a similar structure, with a beta-alpha-beta fold characteristic of nucleotide binding proteins []. The fold comprises a parallel beta-8/alpha-8-barrel, which contains a novel NADP-binding motif. The binding site is located in a large, deep, elliptical pocket in the C-terminal end of the beta sheet, the substrate being bound in an extended conformation. The hydrophobic nature of the pocket favours aromatic and apolar substrates over highly polar ones []. Binding of the NADPH coenzyme causes a massive conformational change, reorienting a loop, effectively locking the coenzyme in place. This binding is more similar to FAD- than to NAD(P)-binding oxidoreductases []. Some proteins of this entry contain a K+ ion channel beta chain regulatory domain; these are reported to have oxidoreductase activity []. This entry represents the NADP-dependent oxidoreductase domain found in these proteins.; PDB: 1C9W_A 4F40_B 1VBJ_A 1XGD_A 1X97_A 2ACS_A 1EF3_A 2ACU_A 1PWM_A 2NVD_A ....
Probab=100.00 E-value=1.2e-52 Score=370.82 Aligned_cols=249 Identities=36% Similarity=0.554 Sum_probs=208.3
Q ss_pred ccccccccCCCCCCCCCCHHHHHHHHHHHHHcCCCeEeCCcCcCCCChhHHHHHHHHhc--CCCCCEEEEecccccccCC
Q 022968 23 RLGFGCGGLSGIYNKPLSHEVGCSIIKETFNRGITLFDTSDVYGVDHDNEIMVGKALKQ--LPRDKIQLATKFGCFMLDG 100 (289)
Q Consensus 23 ~lg~G~~~~~~~~~~~~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~~g~se~~lg~~l~~--~~R~~~~I~tK~~~~~~~~ 100 (289)
+||||||++++. ..+.+++.++|+.|++.|||+||||+.||+ |.+|+.+|++|++ .+|++++|+||+...
T Consensus 1 ~l~lG~~~~~~~---~~~~~~~~~~l~~a~~~Gin~~DtA~~Y~~-g~sE~~lg~~l~~~~~~r~~~~i~tK~~~~---- 72 (283)
T PF00248_consen 1 PLGLGTWRLGGE---RVSEEEAEAILRRALEAGINFFDTADSYGN-GRSERILGRALRKSRVPRDDIFISTKVYGD---- 72 (283)
T ss_dssp SBEEECTTBTTT---TSTHHHHHHHHHHHHHTT--EEEECGGGGG-GTHHHHHHHHHHHTSSTGGGSEEEEEEESS----
T ss_pred CEEEEccccCCC---CCCHHHHHHHHHHHHHcCCCeecccccccc-cccccccccccccccccccccccccccccc----
Confidence 589999998763 568999999999999999999999999987 8899999999998 689999999999211
Q ss_pred cccCCCCCHHHHHHHHHHHHHHcCCCcccEEeecCCCCCCC-HHHHHHHHHHHHHcCccceeecCCCCHHHHHHH--Hcc
Q 022968 101 VSIGVKGSPEYVRKCCEASLKRLDVDYIDLYYQHRVDTSVS-IEDTMGELKKLVEEGKIKYIGLSEASADTIRRA--HAV 177 (289)
Q Consensus 101 ~~~~~~~~~~~i~~~~~~sL~~L~~~~iDl~~lh~~~~~~~-~~~~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~--~~~ 177 (289)
.......+++.+++++++||++||+||||+|+||+|+.... ..++|++|++|+++|+||+||||||++++++++ ...
T Consensus 73 ~~~~~~~~~~~i~~~~~~sL~~L~~d~iDl~~lH~~~~~~~~~~~~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~~~~~~ 152 (283)
T PF00248_consen 73 GKPEPDYSPDSIRESLERSLERLGTDYIDLLLLHWPDPSEDALEEVWEALEELKKEGKIRHIGVSNFSPEQLEAALKIGS 152 (283)
T ss_dssp SSTGGGSSHHHHHHHHHHHHHHHTSSSEEEEEESSSSTTSSHHHHHHHHHHHHHHTTSEEEEEEES--HHHHHHHHTCTS
T ss_pred ccccccccccccccccccccccccccchhccccccccccccccchhhhhhhhcccccccccccccccccccccccccccc
Confidence 12344679999999999999999999999999999998888 899999999999999999999999999999999 555
Q ss_pred CCceEEeccCCCCCcchhhhhHHHHHHhCCeEEEcccCccccCCCCCCCCCCCcchhhhcCCCCCccchHHHHHHHHHHH
Q 022968 178 HPITAVQMEYSLWTREIEDDIIPLCRELGIGIVAYSPLGRGFFAGKAVVESLPSESILAMHPRFSGENLEKNKLLYTRLE 257 (289)
Q Consensus 178 ~~~~~~q~~~~~~~~~~~~~~~~~~~~~gi~v~a~~pl~~G~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 257 (289)
.+|+++|++||++++....+++++|+++||++++|+|+++|+|+++......+...... .......+.+.
T Consensus 153 ~~~~~~q~~~n~~~~~~~~~l~~~~~~~gi~v~a~~~l~~G~l~~~~~~~~~~~~~~~~----------~~~~~~~~~l~ 222 (283)
T PF00248_consen 153 IPPDVVQINYNLLNRREEEGLLEFCREHGIGVIAYSPLAGGLLTGKYKSPPPPPSRASL----------RDAQELADALR 222 (283)
T ss_dssp S-ESEEEEE-BTTBHBGGHHHHHHHHHTT-EEEEESTTGGGCGGTTTTTTTTSTTTSGS----------STHGGGHHHHH
T ss_pred ccccccccccccccccccccccccccccccccccccccccCccccccccCCCccccccc----------chhhhhhhhhh
Confidence 88999999999997766789999999999999999999999999874322111100000 00345567999
Q ss_pred HHHHHhCCCHHHHHHHHHHhCCCCeEeecCCC
Q 022968 258 TLAAKYGCTTPQLALAWLLHQGDDIVPIPGIY 289 (289)
Q Consensus 258 ~ia~~~g~s~~q~al~w~l~~~~v~~~i~g~~ 289 (289)
++++++|+|++|+||+|+++++.+++||+|++
T Consensus 223 ~~a~~~g~s~~q~al~~~l~~~~~~~~i~g~~ 254 (283)
T PF00248_consen 223 ELAEEHGVSPAQLALRWVLSHPGVASVIVGAS 254 (283)
T ss_dssp HHHHHHTSSHHHHHHHHHHTSHTTEEEEEB-S
T ss_pred hhhhhcccccchhhhhhhhhccccccccCCCC
Confidence 99999999999999999999999999999986
No 11
>PRK14863 bifunctional regulator KidO; Provisional
Probab=100.00 E-value=4.7e-52 Score=367.39 Aligned_cols=242 Identities=19% Similarity=0.244 Sum_probs=204.6
Q ss_pred CcccCccccccccCCCC-------CCCCCCHHHHHHHHHHHHHcCCCeEeCCcCcCCCChhHHHHHHHHhcCCCCCEEEE
Q 022968 18 GLEVSRLGFGCGGLSGI-------YNKPLSHEVGCSIIKETFNRGITLFDTSDVYGVDHDNEIMVGKALKQLPRDKIQLA 90 (289)
Q Consensus 18 g~~vs~lg~G~~~~~~~-------~~~~~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~~g~se~~lg~~l~~~~R~~~~I~ 90 (289)
+++||+||||||++|+. |+. ++++++.++|+.|+++|||+||||+.||. ||..+|++|+...+++++|+
T Consensus 2 ~~~vs~iglGt~~~g~~~~~~~~~~~~-~~~~ea~~~l~~A~~~Gin~~DTA~~YG~---SE~~lG~al~~~~~~~~~i~ 77 (292)
T PRK14863 2 SSPVSKLGLAAAQFGLDPGSSSAPRGR-TPEAEARDILNIAARAGLSVLDASGLFGR---AETVLGQLIPRPVPFRVTLS 77 (292)
T ss_pred CCcceeeeeeeeccCCCcccccCCCCC-CCHHHHHHHHHHHHHcCCCEEecchhhhh---HHHHHhhhhccCCceEeecc
Confidence 57899999999999864 343 58999999999999999999999999986 99999999985334678888
Q ss_pred ecccccccCCcccCCCCCHHHHHHHHHHHHHHcCCCcccEEeecCCCCC-CCH-HHHHHHHHHHHHcCccceeecCCCCH
Q 022968 91 TKFGCFMLDGVSIGVKGSPEYVRKCCEASLKRLDVDYIDLYYQHRVDTS-VSI-EDTMGELKKLVEEGKIKYIGLSEASA 168 (289)
Q Consensus 91 tK~~~~~~~~~~~~~~~~~~~i~~~~~~sL~~L~~~~iDl~~lh~~~~~-~~~-~~~~~~l~~l~~~G~ir~iGvs~~~~ 168 (289)
||.. +.+++.+++++++||+|||+||||+|++|+|++. .+. +++|++|++|+++||||+|||||+++
T Consensus 78 tk~~-----------~~~~~~i~~~~e~SL~rLg~d~iDl~~lH~~~~~~~~~~~~~~~~l~~l~~~Gkir~iGvSn~~~ 146 (292)
T PRK14863 78 TVRA-----------DRGPDFVEAEARASLRRMGVERADAILVHSPTELFGPHGAALWERLQALKDQGLFAKIGVSAHAS 146 (292)
T ss_pred cccc-----------cccHHHHHHHHHHHHHHhCCCccCeEEEeCchhhcCcchHHHHHHHHHHHHcCCcceEeeeccCH
Confidence 8842 2368999999999999999999999999999763 333 57899999999999999999999999
Q ss_pred HHHHHHHccCCceEEeccCCCCCcchh-hhhHHHHHHhCCeEEEcccCccccCCCCCCCCCCCcchhhhcCCCCCccchH
Q 022968 169 DTIRRAHAVHPITAVQMEYSLWTREIE-DDIIPLCRELGIGIVAYSPLGRGFFAGKAVVESLPSESILAMHPRFSGENLE 247 (289)
Q Consensus 169 ~~l~~~~~~~~~~~~q~~~~~~~~~~~-~~~~~~~~~~gi~v~a~~pl~~G~L~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (289)
+++..+....+|+++|++||++++..+ .+++++|+++||++++|+||++|+|++... ..+ .. +.
T Consensus 147 ~~~~~~~~~~~~~~~Q~~~n~l~~~~~~~~~l~~~~~~gi~v~a~spl~~G~L~~~~~--~~~--------~~-----~~ 211 (292)
T PRK14863 147 DDPVGVARRFKPDILQAPASLLDQRLLADGSLQRIAGMGVEVHLRSIFLNGLLFLPPD--RVP--------AQ-----LK 211 (292)
T ss_pred HHHHHHHhcCCCCEEEecCCcccccccccchHHHHHhCCCEEEEechhhCccccCCcc--cCc--------cc-----hh
Confidence 999888777889999999999998643 469999999999999999999999975311 000 00 11
Q ss_pred HHHHHHHHHHHHHHHhCCCHHHHHHHHHHhCCCCeEeecCCC
Q 022968 248 KNKLLYTRLETLAAKYGCTTPQLALAWLLHQGDDIVPIPGIY 289 (289)
Q Consensus 248 ~~~~~~~~l~~ia~~~g~s~~q~al~w~l~~~~v~~~i~g~~ 289 (289)
.....+..+.+++.++++|++|+||+|++++|.|+++|+|++
T Consensus 212 ~~~~~~~~~~~~~~~~~~s~aqlalaw~l~~p~v~~~I~G~~ 253 (292)
T PRK14863 212 GASGRLSRVRRMIAEGRSDPLQAALGFALSRPEGSAVLVGVN 253 (292)
T ss_pred hhhHHHHHHHHHHHHcCCCHHHHHHHHHHhCCCCCeEEEecC
Confidence 223445677888888999999999999999999999999986
No 12
>KOG1577 consensus Aldo/keto reductase family proteins [General function prediction only]
Probab=100.00 E-value=4.2e-52 Score=357.70 Aligned_cols=227 Identities=32% Similarity=0.480 Sum_probs=200.3
Q ss_pred eeEcCCCCcccCccccccccCCCCCCCCCCHHHHHHHHHHHHHcCCCeEeCCcCcCCCChhHHHHHHHHhc------CCC
Q 022968 11 RVKLGSQGLEVSRLGFGCGGLSGIYNKPLSHEVGCSIIKETFNRGITLFDTSDVYGVDHDNEIMVGKALKQ------LPR 84 (289)
Q Consensus 11 ~~~lg~~g~~vs~lg~G~~~~~~~~~~~~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~~g~se~~lg~~l~~------~~R 84 (289)
..+| ++|.++|.||||||.. +..++.+.++.|++.|+|+||||..|+ +|.-+|++|++ .+|
T Consensus 6 ~~~L-n~G~~mP~iGlGTw~~--------~~~~~~~aV~~Al~~GYRHIDtA~~Y~----NE~evG~aik~~i~~~~v~R 72 (300)
T KOG1577|consen 6 TVKL-NNGFKMPIIGLGTWQS--------PPGQVAEAVKAAIKAGYRHIDTAHVYG----NEKEVGEAIKELLAEGGVKR 72 (300)
T ss_pred eEec-cCCCccceeeeEeccc--------ChhhHHHHHHHHHHhCcceeechhhhC----ChHHHHHHHHHHhhhCCcch
Confidence 6788 9999999999999972 578899999999999999999999999 69999999996 489
Q ss_pred CCEEEEecccccccCCcccCCCCCHHHHHHHHHHHHHHcCCCcccEEeecCCCCC----------------CCHHHHHHH
Q 022968 85 DKIQLATKFGCFMLDGVSIGVKGSPEYVRKCCEASLKRLDVDYIDLYYQHRVDTS----------------VSIEDTMGE 148 (289)
Q Consensus 85 ~~~~I~tK~~~~~~~~~~~~~~~~~~~i~~~~~~sL~~L~~~~iDl~~lh~~~~~----------------~~~~~~~~~ 148 (289)
+++||+||++... ..++.++.++++||++|++||+|+|++|||-.. .+..++|++
T Consensus 73 ediFiTSKlw~~~---------~~~~~v~~al~~sLk~L~ldYvDLyLiH~P~~~k~~~~~~~~~~~~~~~~~~~~tW~a 143 (300)
T KOG1577|consen 73 EDIFITSKLWPTD---------HAPELVEKALEKSLKKLQLDYVDLYLIHWPVAFKDSFPKDENGKVNYDDVDRIETWKA 143 (300)
T ss_pred hhheeeeccCccc---------cChhhHHHHHHHHHHHhChhhhheeeEecccccCCCCCcccccccccccchHHHHHHH
Confidence 9999999998653 578899999999999999999999999999543 346789999
Q ss_pred HHHHHHcCccceeecCCCCHHHHHHHHcc--CCceEEeccCCCCCcchhhhhHHHHHHhCCeEEEcccCccccCCCCCCC
Q 022968 149 LKKLVEEGKIKYIGLSEASADTIRRAHAV--HPITAVQMEYSLWTREIEDDIIPLCRELGIGIVAYSPLGRGFFAGKAVV 226 (289)
Q Consensus 149 l~~l~~~G~ir~iGvs~~~~~~l~~~~~~--~~~~~~q~~~~~~~~~~~~~~~~~~~~~gi~v~a~~pl~~G~L~~~~~~ 226 (289)
||+++++|++|+||||||+..+|++++.. .+|.++|++++++.++ .+++++|+++||.|.|||||+++-- ++
T Consensus 144 mE~~~~~Gl~rsIGVSNF~~~~le~ll~~~ki~P~vnQvE~HP~~~Q--~~L~~fCk~~~I~v~AYSpLg~~~~-~~--- 217 (300)
T KOG1577|consen 144 MEKLVDEGLVRSIGVSNFNIKQLEELLNLAKIKPAVNQVECHPYLQQ--KKLVEFCKSKGIVVTAYSPLGSPGR-GS--- 217 (300)
T ss_pred HHHHHHcCCceEeeeecCCHHHHHHHHhcCCCCCccceeeccCCcCh--HHHHHHHhhCCcEEEEecCCCCCCC-cc---
Confidence 99999999999999999999999999886 6789999999998876 5799999999999999999997641 00
Q ss_pred CCCCcchhhhcCCCCCccchHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHhCCCCeEeecCCC
Q 022968 227 ESLPSESILAMHPRFSGENLEKNKLLYTRLETLAAKYGCTTPQLALAWLLHQGDDIVPIPGIY 289 (289)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ia~~~g~s~~q~al~w~l~~~~v~~~i~g~~ 289 (289)
.+..-+.+.+||++||+|++|++|||+++++. +|||.++
T Consensus 218 ----------------------~ll~~~~l~~iA~K~~kt~aQIlLrw~~q~g~--~vipKS~ 256 (300)
T KOG1577|consen 218 ----------------------DLLEDPVLKEIAKKYNKTPAQILLRWALQRGV--SVIPKSS 256 (300)
T ss_pred ----------------------ccccCHHHHHHHHHhCCCHHHHHHHHHHhCCc--EEEeccC
Confidence 00011589999999999999999999999997 8888764
No 13
>PRK11172 dkgB 2,5-diketo-D-gluconate reductase B; Provisional
Probab=100.00 E-value=7.3e-51 Score=356.16 Aligned_cols=216 Identities=27% Similarity=0.434 Sum_probs=191.0
Q ss_pred cccCccccccccCCCCCCCCCCHHHHHHHHHHHHHcCCCeEeCCcCcCCCChhHHHHHHHHhc--CCCCCEEEEeccccc
Q 022968 19 LEVSRLGFGCGGLSGIYNKPLSHEVGCSIIKETFNRGITLFDTSDVYGVDHDNEIMVGKALKQ--LPRDKIQLATKFGCF 96 (289)
Q Consensus 19 ~~vs~lg~G~~~~~~~~~~~~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~~g~se~~lg~~l~~--~~R~~~~I~tK~~~~ 96 (289)
++||+||||||++ +.+++.+++++|++.|||+||||+.|| +|..+|++|++ .+|+++||+||++..
T Consensus 1 ~~vs~lglGt~~~--------~~~~~~~~i~~A~~~Gi~~~DTA~~Yg----~E~~lG~al~~~~~~R~~v~i~TK~~~~ 68 (267)
T PRK11172 1 MSIPAFGLGTFRL--------KDQVVIDSVKTALELGYRAIDTAQIYD----NEAAVGQAIAESGVPRDELFITTKIWID 68 (267)
T ss_pred CCCCCEeeEcccc--------ChHHHHHHHHHHHHcCCCEEEccchhC----CHHHHHHHHHHcCCChhHeEEEEEeCCC
Confidence 4699999999975 346799999999999999999999999 69999999985 369999999998532
Q ss_pred ccCCcccCCCCCHHHHHHHHHHHHHHcCCCcccEEeecCCCCC--CCHHHHHHHHHHHHHcCccceeecCCCCHHHHHHH
Q 022968 97 MLDGVSIGVKGSPEYVRKCCEASLKRLDVDYIDLYYQHRVDTS--VSIEDTMGELKKLVEEGKIKYIGLSEASADTIRRA 174 (289)
Q Consensus 97 ~~~~~~~~~~~~~~~i~~~~~~sL~~L~~~~iDl~~lh~~~~~--~~~~~~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~ 174 (289)
..+++.+++++++||+|||+||||+|++|+|++. .+.+++|++|++|+++||||+||||||+.++++++
T Consensus 69 ---------~~~~~~~~~~~~~SL~rL~~d~iDl~~lH~~~~~~~~~~~~~~~~l~~l~~~Gkir~iGvSn~~~~~l~~~ 139 (267)
T PRK11172 69 ---------NLAKDKLIPSLKESLQKLRTDYVDLTLIHWPSPNDEVSVEEFMQALLEAKKQGLTREIGISNFTIALMKQA 139 (267)
T ss_pred ---------CCCHHHHHHHHHHHHHHhCCCceEEEEeCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEccCCHHHHHHH
Confidence 3578999999999999999999999999999763 56789999999999999999999999999999888
Q ss_pred Hcc---CCceEEeccCCCCCcchhhhhHHHHHHhCCeEEEcccCccccCCCCCCCCCCCcchhhhcCCCCCccchHHHHH
Q 022968 175 HAV---HPITAVQMEYSLWTREIEDDIIPLCRELGIGIVAYSPLGRGFFAGKAVVESLPSESILAMHPRFSGENLEKNKL 251 (289)
Q Consensus 175 ~~~---~~~~~~q~~~~~~~~~~~~~~~~~~~~~gi~v~a~~pl~~G~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (289)
++. .+++++|++||++++. .+++++|+++||++++|+||++|.+...
T Consensus 140 ~~~~~~~~~~~~Q~~~~~~~~~--~~ll~~~~~~gi~v~a~spl~~G~~~~~---------------------------- 189 (267)
T PRK11172 140 IAAVGAENIATNQIELSPYLQN--RKVVAFAKEHGIHVTSYMTLAYGKVLKD---------------------------- 189 (267)
T ss_pred HHhcCCCCCeEEeeecCCCCCc--HHHHHHHHHCCCEEEEECCCCCCcccCC----------------------------
Confidence 764 3689999999999875 5899999999999999999999864310
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHhCCCCeEeecCCC
Q 022968 252 LYTRLETLAAKYGCTTPQLALAWLLHQGDDIVPIPGIY 289 (289)
Q Consensus 252 ~~~~l~~ia~~~g~s~~q~al~w~l~~~~v~~~i~g~~ 289 (289)
+.++++|+++|+|++|+||+|+++++. +||+|++
T Consensus 190 --~~l~~~a~~~~~s~aqval~w~l~~~~--~~i~g~~ 223 (267)
T PRK11172 190 --PVIARIAAKHNATPAQVILAWAMQLGY--SVIPSST 223 (267)
T ss_pred --HHHHHHHHHhCCCHHHHHHHHHHhCCC--EeecCCC
Confidence 368899999999999999999999974 6999975
No 14
>COG4989 Predicted oxidoreductase [General function prediction only]
Probab=100.00 E-value=2.8e-50 Score=332.74 Aligned_cols=255 Identities=30% Similarity=0.440 Sum_probs=223.8
Q ss_pred CCeeEcCCCCcccCccccccccCCCCCCCCCCHHHHHHHHHHHHHcCCCeEeCCcCcCCCChhHHHHHHHHhc--CCCCC
Q 022968 9 VPRVKLGSQGLEVSRLGFGCGGLSGIYNKPLSHEVGCSIIKETFNRGITLFDTSDVYGVDHDNEIMVGKALKQ--LPRDK 86 (289)
Q Consensus 9 m~~~~lg~~g~~vs~lg~G~~~~~~~~~~~~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~~g~se~~lg~~l~~--~~R~~ 86 (289)
|++.+|++.|+++|++.+|+|++.. |+ ++..+....+..|+|.||++||-|+.||. +.+|+++|.+|+- .-|++
T Consensus 1 m~rI~l~~~~~e~Sriv~G~wRl~d-~~--~~~~e~~~~Ie~~le~Gitt~DhADIYGg-y~cE~~fg~aL~l~p~lRek 76 (298)
T COG4989 1 MQRITLAPDGLEFSRIVLGYWRLND-WN--MSARELLSFIETALELGITTFDHADIYGG-YQCEALFGEALKLAPGLREK 76 (298)
T ss_pred CceEEecCCCccHHHHHHHHHhhhh-cc--CCHHHHHHHHHHHHHcCcccchhhhhcCC-ccHHHHHHHHHhcChhhhhh
Confidence 7899999999999999999999976 32 46789999999999999999999999998 9999999999986 46999
Q ss_pred EEEEecccccccCC---cccCCCCCHHHHHHHHHHHHHHcCCCcccEEeecCCCCCCCHHHHHHHHHHHHHcCccceeec
Q 022968 87 IQLATKFGCFMLDG---VSIGVKGSPEYVRKCCEASLKRLDVDYIDLYYQHRVDTSVSIEDTMGELKKLVEEGKIKYIGL 163 (289)
Q Consensus 87 ~~I~tK~~~~~~~~---~~~~~~~~~~~i~~~~~~sL~~L~~~~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~iGv 163 (289)
+.|+||+|...... ....++.|.++|..++++||++|+|||+|+++||+||+..+.+|+.+++..|+++||||++||
T Consensus 77 ieivsKCGI~~~s~~~~~~~hydts~~HI~~SVe~SL~~L~tDylD~LLiHRPDpLmd~eeVAeAf~~L~~sGKVr~fGV 156 (298)
T COG4989 77 IEIVSKCGIRLPSREEPRIGHYDTSKEHIIKSVEQSLINLKTDYLDLLLIHRPDPLMDAEEVAEAFTHLHKSGKVRHFGV 156 (298)
T ss_pred eEeeeccccccccccccccccccCcHHHHHHHHHHHHHHhccchhhhhhccCCcccCCHHHHHHHHHHHHhcCCeeeeec
Confidence 99999999765432 112467899999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHcc--CCceEEeccCCCCCcc-hhhhhHHHHHHhCCeEEEcccCccccCCCCCCCCCCCcchhhhcCCC
Q 022968 164 SEASADTIRRAHAV--HPITAVQMEYSLWTRE-IEDDIIPLCRELGIGIVAYSPLGRGFFAGKAVVESLPSESILAMHPR 240 (289)
Q Consensus 164 s~~~~~~l~~~~~~--~~~~~~q~~~~~~~~~-~~~~~~~~~~~~gi~v~a~~pl~~G~L~~~~~~~~~~~~~~~~~~~~ 240 (289)
|||++.+++-+-.. .+.++||++.|+++.. ...+.+++|+++.|..+|||||++|-+...
T Consensus 157 SNf~p~Q~~LL~s~l~~~LvtNQlelS~~~~~~~~DGtLd~~q~~~v~pmaWSpl~gG~~F~g----------------- 219 (298)
T COG4989 157 SNFNPAQFELLQSRLPFTLVTNQLELSPLHTPMLLDGTLDYCQQLRVRPMAWSPLGGGGLFLG----------------- 219 (298)
T ss_pred CCCCHHHHHHHHHhccchhhhcceeeccccccccccchHHHHHHcCCCcccccccCCCccccC-----------------
Confidence 99999998766554 4578899999999875 336799999999999999999998843211
Q ss_pred CCccchHHHHHHHHHHHHHHHHhC-CCHHHHHHHHHHhCCCCeEeecCCC
Q 022968 241 FSGENLEKNKLLYTRLETLAAKYG-CTTPQLALAWLLHQGDDIVPIPGIY 289 (289)
Q Consensus 241 ~~~~~~~~~~~~~~~l~~ia~~~g-~s~~q~al~w~l~~~~v~~~i~g~~ 289 (289)
.++.+...++++.||+++| .|.++++++|++.+|.-..||+|+.
T Consensus 220 -----~~~~q~l~~~l~~ia~e~ga~s~~~VaiAWllR~Pa~~~PiiGt~ 264 (298)
T COG4989 220 -----DDKFQRLRKVLDRIAEEYGAVSITAVAIAWLLRHPAKPQPIIGTG 264 (298)
T ss_pred -----CcchHHHHHHHHHHHHHhCcccHHHHHHHHHHhCcCcccceecCC
Confidence 1234556689999999999 7999999999999999999999984
No 15
>PRK11565 dkgA 2,5-diketo-D-gluconate reductase A; Provisional
Probab=100.00 E-value=3.2e-48 Score=340.65 Aligned_cols=223 Identities=30% Similarity=0.417 Sum_probs=194.0
Q ss_pred eeEcCCCCcccCccccccccCCCCCCCCCCHHHHHHHHHHHHHcCCCeEeCCcCcCCCChhHHHHHHHHhc--CCCCCEE
Q 022968 11 RVKLGSQGLEVSRLGFGCGGLSGIYNKPLSHEVGCSIIKETFNRGITLFDTSDVYGVDHDNEIMVGKALKQ--LPRDKIQ 88 (289)
Q Consensus 11 ~~~lg~~g~~vs~lg~G~~~~~~~~~~~~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~~g~se~~lg~~l~~--~~R~~~~ 88 (289)
+..| ++|+.||+||||||++ +.+++.+++++|++.|+|+||||+.|| +|+.+|++|++ .+|++++
T Consensus 6 ~~~l-~~g~~v~~lglG~~~~--------~~~~~~~~l~~A~~~Gi~~~DTA~~Yg----~E~~lG~al~~~~~~R~~~~ 72 (275)
T PRK11565 6 VIKL-QDGNVMPQLGLGVWQA--------SNEEVITAIHKALEVGYRSIDTAAIYK----NEEGVGKALKEASVAREELF 72 (275)
T ss_pred eEEc-CCCCccCCcceECccC--------CHHHHHHHHHHHHHhCCCEEEchhhhC----CHHHHHHHHHHcCCCHHHEE
Confidence 3567 8999999999999974 467899999999999999999999998 69999999986 3699999
Q ss_pred EEecccccccCCcccCCCCCHHHHHHHHHHHHHHcCCCcccEEeecCCCCCC-CHHHHHHHHHHHHHcCccceeecCCCC
Q 022968 89 LATKFGCFMLDGVSIGVKGSPEYVRKCCEASLKRLDVDYIDLYYQHRVDTSV-SIEDTMGELKKLVEEGKIKYIGLSEAS 167 (289)
Q Consensus 89 I~tK~~~~~~~~~~~~~~~~~~~i~~~~~~sL~~L~~~~iDl~~lh~~~~~~-~~~~~~~~l~~l~~~G~ir~iGvs~~~ 167 (289)
|+||++. .+++.+++++++||++|++||||+|++|+|++.. ...++|++|++|+++|+||+||||||+
T Consensus 73 i~tK~~~-----------~~~~~~~~~~~~sL~rL~~d~iDl~~lH~p~~~~~~~~~~~~~l~~l~~~G~ir~iGvSn~~ 141 (275)
T PRK11565 73 ITTKLWN-----------DDHKRPREALEESLKKLQLDYVDLYLMHWPVPAIDHYVEAWKGMIELQKEGLIKSIGVCNFQ 141 (275)
T ss_pred EEEEecC-----------cchHHHHHHHHHHHHHhCCCceEEEEecCCCCCcCcHHHHHHHHHHHHHcCCeeEEeeccCC
Confidence 9999852 2467899999999999999999999999998653 467999999999999999999999999
Q ss_pred HHHHHHHHcc--CCceEEeccCCCCCcchhhhhHHHHHHhCCeEEEcccCccccCCCCCCCCCCCcchhhhcCCCCCccc
Q 022968 168 ADTIRRAHAV--HPITAVQMEYSLWTREIEDDIIPLCRELGIGIVAYSPLGRGFFAGKAVVESLPSESILAMHPRFSGEN 245 (289)
Q Consensus 168 ~~~l~~~~~~--~~~~~~q~~~~~~~~~~~~~~~~~~~~~gi~v~a~~pl~~G~L~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (289)
++++++++.. ..++++|++|+++.+. .+++++|+++||.+++|+||++|.- + .+.
T Consensus 142 ~~~l~~~~~~~~v~~~~~Q~~~~~~~~~--~~~~~~~~~~~i~~~a~spl~~G~~-~-----------------~~~--- 198 (275)
T PRK11565 142 IHHLQRLIDETGVTPVINQIELHPLMQQ--RQLHAWNATHKIQTESWSPLAQGGK-G-----------------VFD--- 198 (275)
T ss_pred HHHHHHHHHhCCCCceeeeeecCCccch--HHHHHHHHHCCCEEEEEccCCCCCc-c-----------------ccc---
Confidence 9999988754 3578899999998875 5799999999999999999997631 0 000
Q ss_pred hHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHhCCCCeEeecCCC
Q 022968 246 LEKNKLLYTRLETLAAKYGCTTPQLALAWLLHQGDDIVPIPGIY 289 (289)
Q Consensus 246 ~~~~~~~~~~l~~ia~~~g~s~~q~al~w~l~~~~v~~~i~g~~ 289 (289)
.+.|.++|+++|+|++|+||||+++++. +||||++
T Consensus 199 -------~~~l~~ia~~~g~s~aq~aL~w~l~~~~--~~I~g~~ 233 (275)
T PRK11565 199 -------QKVIRDLADKYGKTPAQIVIRWHLDSGL--VVIPKSV 233 (275)
T ss_pred -------CHHHHHHHHHhCCCHHHHHHHHHHcCCC--EeeCCCC
Confidence 1478899999999999999999999975 6899985
No 16
>KOG1576 consensus Predicted oxidoreductase [Energy production and conversion]
Probab=100.00 E-value=2.4e-47 Score=317.64 Aligned_cols=264 Identities=27% Similarity=0.425 Sum_probs=228.0
Q ss_pred CCCeeEcCCCCcccCccccccccCCCCCCCCCCHHHHHHHHHHHHHcCCCeEeCCcCcCCCChhHHHHHHHHhcCCCCCE
Q 022968 8 HVPRVKLGSQGLEVSRLGFGCGGLSGIYNKPLSHEVGCSIIKETFNRGITLFDTSDVYGVDHDNEIMVGKALKQLPRDKI 87 (289)
Q Consensus 8 ~m~~~~lg~~g~~vs~lg~G~~~~~~~~~~~~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~~g~se~~lg~~l~~~~R~~~ 87 (289)
.|.||.+|.||++||+|+||+..++..||. .++++....+..|+.+|||+|||++.||. +.+|..+|.++++.||+.+
T Consensus 21 rmeyR~lg~tgl~VSk~~fGga~L~~~fgd-~~~e~~i~tv~eA~k~GINyiDTsp~Ygq-s~se~~lg~al~~vPR~aY 98 (342)
T KOG1576|consen 21 RMEYRQLGSTGLRVSKLGFGGAALGQLFGD-EDEEEGILTVIEAFKSGINYIDTSPYYGQ-SRSEEGLGLALKDVPREAY 98 (342)
T ss_pred HHHHhhcCCCcceeeeeeecchhhhhhcCC-cchhhhHHHHHHHHHccccceecCcccCc-chhHHHHHHHHhhCChhhe
Confidence 489999999999999999999999999988 48888988888899999999999999998 9999999999999999999
Q ss_pred EEEecccccccCCcccCCCCCHHHHHHHHHHHHHHcCCCcccEEeecCCCCC----CCHHHHHHHHHHHHHcCccceeec
Q 022968 88 QLATKFGCFMLDGVSIGVKGSPEYVRKCCEASLKRLDVDYIDLYYQHRVDTS----VSIEDTMGELKKLVEEGKIKYIGL 163 (289)
Q Consensus 88 ~I~tK~~~~~~~~~~~~~~~~~~~i~~~~~~sL~~L~~~~iDl~~lh~~~~~----~~~~~~~~~l~~l~~~G~ir~iGv 163 (289)
||+||++....+ ...-++++++.+++++++||+||++||+|++++|..+.. ..+.|++.+|++||++||||+|||
T Consensus 99 yIaTKvgRy~ld-~~~~FdfsadkvreSv~rSlerLqldyvDilqiHDvefap~ld~vl~Etlp~Le~lk~~Gk~RfiGi 177 (342)
T KOG1576|consen 99 YIATKVGRYELD-YANMFDFSADKVRESVKRSLERLQLDYVDILQIHDVEFAPNLDIVLNETLPALEELKQEGKIRFIGI 177 (342)
T ss_pred eeeeeeeecccC-ccccccchHHHHHHHHHHHHHHhCCceeEEEEeecccccccccHHHHHHHHHHHHHHhcCceeEeee
Confidence 999999876432 234578999999999999999999999999999987643 346799999999999999999999
Q ss_pred CCCCHHHHHHHHccC--CceEEe--ccCCCCCcchhhhhHHHHHHhCCeEEEcccCccccCCCCCCCCCCCcchhhhcCC
Q 022968 164 SEASADTIRRAHAVH--PITAVQ--MEYSLWTREIEDDIIPLCRELGIGIVAYSPLGRGFFAGKAVVESLPSESILAMHP 239 (289)
Q Consensus 164 s~~~~~~l~~~~~~~--~~~~~q--~~~~~~~~~~~~~~~~~~~~~gi~v~a~~pl~~G~L~~~~~~~~~~~~~~~~~~~ 239 (289)
+.++.+.+.+..+.. ..+++- ..|++.+... -..+++.+++|++|+.-++++.|+|+...+++..|.
T Consensus 178 tgypldvl~~~ae~~~G~~dvvlsY~ry~l~d~tL-l~~~~~~~sk~vgVi~AsalsmgLLt~~gp~~wHPa-------- 248 (342)
T KOG1576|consen 178 TGYPLDVLTECAERGKGRLDVVLSYCRYTLNDNTL-LRYLKRLKSKGVGVINASALSMGLLTNQGPPPWHPA-------- 248 (342)
T ss_pred cccchHHHHHHHhcCCCceeeehhhhhhccccHHH-HHHHHHHHhcCceEEehhhHHHHHhhcCCCCCCCCC--------
Confidence 999999999988763 355554 5677665432 467788889999999999999999997644433332
Q ss_pred CCCccchHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHhCCCCeEeecCCC
Q 022968 240 RFSGENLEKNKLLYTRLETLAAKYGCTTPQLALAWLLHQGDDIVPIPGIY 289 (289)
Q Consensus 240 ~~~~~~~~~~~~~~~~l~~ia~~~g~s~~q~al~w~l~~~~v~~~i~g~~ 289 (289)
.+...+...+-.++|++.|+..+.+|++|.++.+.+..+++|.+
T Consensus 249 ------S~Elk~~a~~aa~~Cq~rnv~l~kLA~~Yam~~~~~~~~lvGm~ 292 (342)
T KOG1576|consen 249 ------SDELKEAAKAAAEYCQSRNVELGKLAMYYAMSLPGVSTVLVGMS 292 (342)
T ss_pred ------CHHHHHHHHHHHHHHHHcCccHHHHHHHHHHccCCcceEEecCc
Confidence 34456667778899999999999999999999999999999974
No 17
>COG1453 Predicted oxidoreductases of the aldo/keto reductase family [General function prediction only]
Probab=100.00 E-value=5.2e-46 Score=323.41 Aligned_cols=243 Identities=28% Similarity=0.393 Sum_probs=216.3
Q ss_pred CCeeEcCCCCcccCccccccccCCCCCCCCCCHHHHHHHHHHHHHcCCCeEeCCcCcCCCChhHHHHHHHHhcCCCCCEE
Q 022968 9 VPRVKLGSQGLEVSRLGFGCGGLSGIYNKPLSHEVGCSIIKETFNRGITLFDTSDVYGVDHDNEIMVGKALKQLPRDKIQ 88 (289)
Q Consensus 9 m~~~~lg~~g~~vs~lg~G~~~~~~~~~~~~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~~g~se~~lg~~l~~~~R~~~~ 88 (289)
|.||++|+||.++|.||||||++...+....|.+++.++|++|++.|||+||||..|.. |.||..+|+||++..|++++
T Consensus 1 Mlyr~~~k~g~~~s~lgfG~MRlp~~~~~~id~~~~~~~i~~aie~GiNyidTA~~Yh~-g~sE~~lgkaL~~~~Rekv~ 79 (391)
T COG1453 1 MLYRKFPKTGDELSILGFGCMRLPLKEQGSIDEENANETIDYAIEHGINYIDTAWPYHG-GESEEFLGKALKDGYREKVK 79 (391)
T ss_pred CchhhcCCCCcccceeccceeecccccCCCccHHHHHHHHHHHHHcCCceEeecccccC-CCchHHHHHHhhhcccceEE
Confidence 88999999999999999999999776656679999999999999999999999999965 67999999999998899999
Q ss_pred EEecccccccCCcccCCCCCHHHHHHHHHHHHHHcCCCcccEEeecCCCCCCCHH-----HHHHHHHHHHHcCccceeec
Q 022968 89 LATKFGCFMLDGVSIGVKGSPEYVRKCCEASLKRLDVDYIDLYYQHRVDTSVSIE-----DTMGELKKLVEEGKIKYIGL 163 (289)
Q Consensus 89 I~tK~~~~~~~~~~~~~~~~~~~i~~~~~~sL~~L~~~~iDl~~lh~~~~~~~~~-----~~~~~l~~l~~~G~ir~iGv 163 (289)
++||+.... ..+.+.+++-++++|++|++||+|+|+||.... ..++ ..++.+++++++|+||++|+
T Consensus 80 LaTKlp~~~--------~~~~edm~r~fneqLekl~~Dy~D~yliH~l~~-e~~~k~~~~g~~df~~kak~eGkIr~~GF 150 (391)
T COG1453 80 LATKLPSWP--------VKDREDMERIFNEQLEKLGTDYIDYYLIHGLNT-ETWEKIERLGVFDFLEKAKAEGKIRNAGF 150 (391)
T ss_pred EEeecCCcc--------ccCHHHHHHHHHHHHHHhCCchhhhhhhccccH-HHHHHHHccChHHHHHHHHhcCcEEEeee
Confidence 999997543 247899999999999999999999999999876 3332 36999999999999999999
Q ss_pred CCCC-HHHHHHHHccCCceEEeccCCCCCcchh--hhhHHHHHHhCCeEEEcccCccccCCCCCCCCCCCcchhhhcCCC
Q 022968 164 SEAS-ADTIRRAHAVHPITAVQMEYSLWTREIE--DDIIPLCRELGIGIVAYSPLGRGFFAGKAVVESLPSESILAMHPR 240 (289)
Q Consensus 164 s~~~-~~~l~~~~~~~~~~~~q~~~~~~~~~~~--~~~~~~~~~~gi~v~a~~pl~~G~L~~~~~~~~~~~~~~~~~~~~ 240 (289)
|.|+ .+.+.+++...++|++|++||.++.... .+.+++|.++|++|+.++|+.+|-|..+. |
T Consensus 151 SfHgs~e~~~~iv~a~~~dfvqlq~ny~d~~n~~~~~~l~~A~~~~~gI~IMeP~~gG~l~~~v--------------P- 215 (391)
T COG1453 151 SFHGSTEVFKEIVDAYPWDFVQLQYNYIDQKNQAGTEGLKYAASKGLGIFIMEPLDGGGLLYNV--------------P- 215 (391)
T ss_pred cCCCCHHHHHHHHhcCCcceEEeeeeeeccchhcccHHHHHHHhCCCcEEEEeeCCCCCcccCC--------------C-
Confidence 9995 5788899999999999999999987643 48999999999999999999999775321 1
Q ss_pred CCccchHHHHHHHHHHHHHHHHhC--CCHHHHHHHHHHhCCCCeEeecCCC
Q 022968 241 FSGENLEKNKLLYTRLETLAAKYG--CTTPQLALAWLLHQGDDIVPIPGIY 289 (289)
Q Consensus 241 ~~~~~~~~~~~~~~~l~~ia~~~g--~s~~q~al~w~l~~~~v~~~i~g~~ 289 (289)
+++++++++++ .||+..|+||++++|.|.++++|++
T Consensus 216 -------------~~~~~l~~~~~~~~sP~~wa~R~~~shp~V~~vlsGm~ 253 (391)
T COG1453 216 -------------EKLEELCRPASPKRSPAEWALRYLLSHPEVTTVLSGMN 253 (391)
T ss_pred -------------HHHHHHHHhcCCCCCcHHHHHHHHhcCCCeEEEecCCC
Confidence 57888999886 6899999999999999999999975
No 18
>KOG3023 consensus Glutamate-cysteine ligase regulatory subunit [Amino acid transport and metabolism]
Probab=98.38 E-value=8.1e-07 Score=74.18 Aligned_cols=71 Identities=21% Similarity=0.239 Sum_probs=62.6
Q ss_pred HHHHHHHHHHHHHcCccceeecCCCCHHHHHHHHcc--CCceEEeccCCCCCcchhhhhHHHHHHhCCeEEEcc
Q 022968 142 IEDTMGELKKLVEEGKIKYIGLSEASADTIRRAHAV--HPITAVQMEYSLWTREIEDDIIPLCRELGIGIVAYS 213 (289)
Q Consensus 142 ~~~~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~~~~--~~~~~~q~~~~~~~~~~~~~~~~~~~~~gi~v~a~~ 213 (289)
+.+.|+.||+++.+|+|..||||.|++.+|++++.. ..|.++|+...-.+.-+ .++.+||.+|+|.+...+
T Consensus 155 lkplwk~LE~lv~~~kI~~lGvSDfda~qLe~Li~saqVvP~snqVnL~~cCvvP-pdLqafa~~hdiQLltHs 227 (285)
T KOG3023|consen 155 LKPLWKLLEELVGEGKIGTLGVSDFDANQLERLISSAQVVPESNQVNLGQCCVVP-PDLQAFADRHDIQLLTHS 227 (285)
T ss_pred HHHHHHHHHHHhccCceeeeeecccCHHHHHHHHhhhccccccceeeccccccCC-HHHHHHhhhcceeeeecC
Confidence 346799999999999999999999999999999987 56788999888777654 689999999999987654
No 19
>cd03319 L-Ala-DL-Glu_epimerase L-Ala-D/L-Glu epimerase catalyzes the epimerization of L-Ala-D/L-Glu and other dipeptides. The genomic context and the substrate specificity of characterized members of this family from E.coli and B.subtilis indicates a possible role in the metabolism of the murein peptide of peptidoglycan, of which L-Ala-D-Glu is a component. L-Ala-D/L-Glu epimerase is a member of the enolase-superfamily, which is characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=94.29 E-value=2.1 Score=38.29 Aligned_cols=156 Identities=16% Similarity=0.115 Sum_probs=96.6
Q ss_pred CHHHHHHHHHHHHHcCCCeEeCCcCcCCCChhHHHHHHHHhcCCCCCEEEEecccccccCCcccCCCCCHHHHHHHHHHH
Q 022968 40 SHEVGCSIIKETFNRGITLFDTSDVYGVDHDNEIMVGKALKQLPRDKIQLATKFGCFMLDGVSIGVKGSPEYVRKCCEAS 119 (289)
Q Consensus 40 ~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~~g~se~~lg~~l~~~~R~~~~I~tK~~~~~~~~~~~~~~~~~~~i~~~~~~s 119 (289)
+.++..+.++.+.+.|++.|+.-- |.+...+...=+++++.-. ++-|.-+... .++.+... .+-+.
T Consensus 134 ~~~~~~~~~~~~~~~Gf~~iKik~--g~~~~~d~~~v~~lr~~~g-~~~l~vD~n~----------~~~~~~A~-~~~~~ 199 (316)
T cd03319 134 TPEAMAAAAKKAAKRGFPLLKIKL--GGDLEDDIERIRAIREAAP-DARLRVDANQ----------GWTPEEAV-ELLRE 199 (316)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEEe--CCChhhHHHHHHHHHHhCC-CCeEEEeCCC----------CcCHHHHH-HHHHH
Confidence 567778888999999999998642 3101122222234443222 5666666532 23444332 23345
Q ss_pred HHHcCCCcccEEeecCCCCCCCHHHHHHHHHHHHHcCccc-eeecCCCCHHHHHHHHccCCceEEeccCCCCCcc-hhhh
Q 022968 120 LKRLDVDYIDLYYQHRVDTSVSIEDTMGELKKLVEEGKIK-YIGLSEASADTIRRAHAVHPITAVQMEYSLWTRE-IEDD 197 (289)
Q Consensus 120 L~~L~~~~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir-~iGvs~~~~~~l~~~~~~~~~~~~q~~~~~~~~~-~~~~ 197 (289)
|+.+++. ++..|-+. +-++.+.+|++...|. ..|=+-++.+.+.++++....+++|+..+.+-.- ...+
T Consensus 200 l~~~~l~-----~iEeP~~~----~d~~~~~~L~~~~~ipIa~~E~~~~~~~~~~~~~~~~~d~v~~~~~~~GGi~~~~~ 270 (316)
T cd03319 200 LAELGVE-----LIEQPVPA----GDDDGLAYLRDKSPLPIMADESCFSAADAARLAGGGAYDGINIKLMKTGGLTEALR 270 (316)
T ss_pred HHhcCCC-----EEECCCCC----CCHHHHHHHHhcCCCCEEEeCCCCCHHHHHHHHhcCCCCEEEEeccccCCHHHHHH
Confidence 5555443 34444322 2366778888877666 3344567889999999988899999986664321 2267
Q ss_pred hHHHHHHhCCeEEEcccCccc
Q 022968 198 IIPLCRELGIGIVAYSPLGRG 218 (289)
Q Consensus 198 ~~~~~~~~gi~v~a~~pl~~G 218 (289)
+..+|+++|+.++..+-+..+
T Consensus 271 ~~~~a~~~gi~~~~~~~~~~~ 291 (316)
T cd03319 271 IADLARAAGLKVMVGCMVESS 291 (316)
T ss_pred HHHHHHHcCCCEEEECchhhH
Confidence 899999999999886555443
No 20
>COG0635 HemN Coproporphyrinogen III oxidase and related Fe-S oxidoreductases [Coenzyme metabolism]
Probab=89.32 E-value=2.5 Score=39.53 Aligned_cols=109 Identities=18% Similarity=0.245 Sum_probs=64.8
Q ss_pred cCccccccccCCC----CCCCCCCHHHHHHHHHHHHHcCCCeEeCCcCcCCCChhHHHHHHHHhcCCCCCEEEEeccccc
Q 022968 21 VSRLGFGCGGLSG----IYNKPLSHEVGCSIIKETFNRGITLFDTSDVYGVDHDNEIMVGKALKQLPRDKIQLATKFGCF 96 (289)
Q Consensus 21 vs~lg~G~~~~~~----~~~~~~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~~g~se~~lg~~l~~~~R~~~~I~tK~~~~ 96 (289)
|.++++|..+|.. ..|..-+.+++.+.+..+.+.|+..+=.-=.||-|
T Consensus 148 vNRiSlGVQsf~~~~lk~lgR~h~~~~~~~a~~~~~~~g~~~in~DLIyglP---------------------------- 199 (416)
T COG0635 148 VNRISLGVQSFNDEVLKALGRIHDEEEAKEAVELARKAGFTSINIDLIYGLP---------------------------- 199 (416)
T ss_pred CCEEEeccccCCHHHHHHhcCCCCHHHHHHHHHHHHHcCCCcEEEEeecCCC----------------------------
Confidence 4477777766643 12222355666667777777666655333345421
Q ss_pred ccCCcccCCCCCHHHHHHHHHHHHHHcCCCcccEEeec-CCCC----------CCCH----HHHHHH-HHHHHHcCccce
Q 022968 97 MLDGVSIGVKGSPEYVRKCCEASLKRLDVDYIDLYYQH-RVDT----------SVSI----EDTMGE-LKKLVEEGKIKY 160 (289)
Q Consensus 97 ~~~~~~~~~~~~~~~i~~~~~~sL~~L~~~~iDl~~lh-~~~~----------~~~~----~~~~~~-l~~l~~~G~ir~ 160 (289)
.-+.+.+.+.+++.++ |+.|+|.+|.|- -|.. ..+. .+.++. .+.|.+.|. +.
T Consensus 200 ---------~QT~~~~~~~l~~a~~-l~pdhis~y~L~~~p~t~~~~~~~~~~~lP~~d~~~~~~~~~~e~L~~~Gy-~~ 268 (416)
T COG0635 200 ---------GQTLESLKEDLEQALE-LGPDHLSLYSLAIEPGTKFAQRKIKGKALPDEDEKADMYELVEELLEKAGY-RQ 268 (416)
T ss_pred ---------CCCHHHHHHHHHHHHh-CCCCEEEEeeeecCCCchhhhhcccCCCCcChHHHHHHHHHHHHHHHHCCC-cE
Confidence 2356666777766665 889999999883 3311 0111 134443 445666777 99
Q ss_pred eecCCCCH
Q 022968 161 IGLSEASA 168 (289)
Q Consensus 161 iGvs~~~~ 168 (289)
+|+|||..
T Consensus 269 yeisnfa~ 276 (416)
T COG0635 269 YEISNFAK 276 (416)
T ss_pred EeechhcC
Confidence 99999976
No 21
>PRK07535 methyltetrahydrofolate:corrinoid/iron-sulfur protein methyltransferase; Validated
Probab=88.07 E-value=16 Score=31.90 Aligned_cols=101 Identities=14% Similarity=0.159 Sum_probs=62.1
Q ss_pred CCHHHHHHHHHHHHHHcCCCcccEEeecCCCCCCCHHHHHHHHHHHHHcCccceeecCCCCHHHHHHHHcc--CCceEEe
Q 022968 107 GSPEYVRKCCEASLKRLDVDYIDLYYQHRVDTSVSIEDTMGELKKLVEEGKIKYIGLSEASADTIRRAHAV--HPITAVQ 184 (289)
Q Consensus 107 ~~~~~i~~~~~~sL~~L~~~~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~~~~--~~~~~~q 184 (289)
.+.+.+.+..++-. .-|-+.||+-.= +......+.....++.+++.-.+ -+-+-+++++.++++++. ...-+|
T Consensus 22 ~d~~~i~~~A~~~~-~~GAdiIDVg~~--~~~~eE~~r~~~~v~~l~~~~~~-plsIDT~~~~v~eaaL~~~~G~~iIN- 96 (261)
T PRK07535 22 KDAAFIQKLALKQA-EAGADYLDVNAG--TAVEEEPETMEWLVETVQEVVDV-PLCIDSPNPAAIEAGLKVAKGPPLIN- 96 (261)
T ss_pred CCHHHHHHHHHHHH-HCCCCEEEECCC--CCchhHHHHHHHHHHHHHHhCCC-CEEEeCCCHHHHHHHHHhCCCCCEEE-
Confidence 35556655555443 578899998643 22222233455566666554222 378889999999999987 443333
Q ss_pred ccCCCCCcchhhhhHHHHHHhCCeEEEccc
Q 022968 185 MEYSLWTREIEDDIIPLCRELGIGIVAYSP 214 (289)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~gi~v~a~~p 214 (289)
..+..... ..++++.++++|..++...-
T Consensus 97 -sIs~~~~~-~~~~~~l~~~~g~~vv~m~~ 124 (261)
T PRK07535 97 -SVSAEGEK-LEVVLPLVKKYNAPVVALTM 124 (261)
T ss_pred -eCCCCCcc-CHHHHHHHHHhCCCEEEEec
Confidence 33332211 24789999999999987653
No 22
>TIGR02370 pyl_corrinoid methyltransferase cognate corrinoid proteins, Methanosarcina family. This model describes a subfamily of the B12 binding domain (pfam02607, pfam02310) proteins. Members of the seed alignment include corrinoid proteins specific to four different, mutally non-homologous enzymes of the genus Methanosarcina. Three of the four cognate enzymes (trimethylamine, dimethylamine, and monomethylamine methyltransferases) all have the unusual, ribosomally incorporated amino acid pyrrolysine at the active site. All act in systems in which a methyl group is transferred to the corrinoid protein to create methylcobalamin, from which the methyl group is later transferred elsewhere.
Probab=88.06 E-value=7.6 Score=32.26 Aligned_cols=145 Identities=11% Similarity=0.025 Sum_probs=88.3
Q ss_pred CHHHHHHHHHHHHHcCCCeEeCCcCcCCCChhHHHHHHHHhc----CCCCCEEEEecccccccCCcccCCCCCHHHHHHH
Q 022968 40 SHEVGCSIIKETFNRGITLFDTSDVYGVDHDNEIMVGKALKQ----LPRDKIQLATKFGCFMLDGVSIGVKGSPEYVRKC 115 (289)
Q Consensus 40 ~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~~g~se~~lg~~l~~----~~R~~~~I~tK~~~~~~~~~~~~~~~~~~~i~~~ 115 (289)
|.+++.++++.|++.|+...|.- +..+..+++. -.++++++.-= ....+.+++.
T Consensus 10 d~~~~~~~v~~~l~~g~~~~~i~---------~~~l~p~m~~iG~~w~~gei~va~~-------------~~a~~~~~~~ 67 (197)
T TIGR02370 10 EEDDVVEGAQKALDAGIDPIELI---------EKGLMAGMGVVGKLFEDGELFLPHV-------------MMSADAMLAG 67 (197)
T ss_pred CHHHHHHHHHHHHHcCCCHHHHH---------HHHHHHHHHHHHHHHcCCCccHHHH-------------HHHHHHHHHH
Confidence 78899999999999999877633 2344444443 13344444221 1223445555
Q ss_pred HHHHHHHcCC----CcccEEeecCCCCCCCHHHHHHHHHHHHHcCc-cceeecCCCCHHHHHHHHccCCceEEeccCCCC
Q 022968 116 CEASLKRLDV----DYIDLYYQHRVDTSVSIEDTMGELKKLVEEGK-IKYIGLSEASADTIRRAHAVHPITAVQMEYSLW 190 (289)
Q Consensus 116 ~~~sL~~L~~----~~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~-ir~iGvs~~~~~~l~~~~~~~~~~~~q~~~~~~ 190 (289)
+......+.. +.---+++-.+..+...-...-...-|+..|. |.++|. +.+.+.+.+.+....|+++.+.+...
T Consensus 68 l~~l~~~~~~~~~~~~~~~vv~~t~~gd~H~lG~~~v~~~l~~~G~~vi~LG~-~vp~e~~v~~~~~~~pd~v~lS~~~~ 146 (197)
T TIGR02370 68 IKVLTPEMEKAVETEVLGKVVCGVAEGDVHDIGKNIVVTMLRANGFDVIDLGR-DVPIDTVVEKVKKEKPLMLTGSALMT 146 (197)
T ss_pred HHHHHHHhhccccCCCCCeEEEEeCCCchhHHHHHHHHHHHHhCCcEEEECCC-CCCHHHHHHHHHHcCCCEEEEccccc
Confidence 5555454542 11123444444444333344444556777887 888995 55677777877878889999888765
Q ss_pred Ccch-hhhhHHHHHHhCC
Q 022968 191 TREI-EDDIIPLCRELGI 207 (289)
Q Consensus 191 ~~~~-~~~~~~~~~~~gi 207 (289)
.... -.++++.+++.+.
T Consensus 147 ~~~~~~~~~i~~l~~~~~ 164 (197)
T TIGR02370 147 TTMYGQKDINDKLKEEGY 164 (197)
T ss_pred cCHHHHHHHHHHHHHcCC
Confidence 5432 2678888888854
No 23
>cd03315 MLE_like Muconate lactonizing enzyme (MLE) like subgroup of the enolase superfamily. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and residues that can function as general acid/base catalysts, a Lys-X-Lys motif and another conserved lysine. Despite these conserved residues, the members of the MLE subgroup, like muconate lactonizing enzyme, o-succinylbenzoate synthase (OSBS) and N-acylamino acid racemase (NAAAR), catalyze different reactions.
Probab=87.81 E-value=17 Score=31.45 Aligned_cols=158 Identities=16% Similarity=0.184 Sum_probs=95.2
Q ss_pred CHHHHHHHHHHHHHcCCCeEeCCcCcCCCChhHHHHHHHHhcCCCCCEEEEecccccccCCcccCCCCCHHHHHHHHHHH
Q 022968 40 SHEVGCSIIKETFNRGITLFDTSDVYGVDHDNEIMVGKALKQLPRDKIQLATKFGCFMLDGVSIGVKGSPEYVRKCCEAS 119 (289)
Q Consensus 40 ~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~~g~se~~lg~~l~~~~R~~~~I~tK~~~~~~~~~~~~~~~~~~~i~~~~~~s 119 (289)
+.++..+.++.+.+.|++.|-.-- |.+...+...=+++++.-.+++.|.-.... .++.+...+-+ +.
T Consensus 85 ~~~~~~~~~~~~~~~G~~~~KiKv--g~~~~~d~~~v~~vr~~~g~~~~l~vDan~----------~~~~~~a~~~~-~~ 151 (265)
T cd03315 85 EPAEVAEEARRALEAGFRTFKLKV--GRDPARDVAVVAALREAVGDDAELRVDANR----------GWTPKQAIRAL-RA 151 (265)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEec--CCCHHHHHHHHHHHHHhcCCCCEEEEeCCC----------CcCHHHHHHHH-HH
Confidence 456677888888999999986432 210112222233444422334555444321 24544443333 34
Q ss_pred HHHcCCCcccEEeecCCCCCCCHHHHHHHHHHHHHcCccc-eeecCCCCHHHHHHHHccCCceEEeccCCCCCc-chhhh
Q 022968 120 LKRLDVDYIDLYYQHRVDTSVSIEDTMGELKKLVEEGKIK-YIGLSEASADTIRRAHAVHPITAVQMEYSLWTR-EIEDD 197 (289)
Q Consensus 120 L~~L~~~~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir-~iGvs~~~~~~l~~~~~~~~~~~~q~~~~~~~~-~~~~~ 197 (289)
|+.++ +.++..|-+. +.++.+.+|++.-.+. ..|=+-++.+.+.++++...++++|+..+..-. ....+
T Consensus 152 l~~~~-----i~~iEeP~~~----~d~~~~~~l~~~~~ipia~dE~~~~~~~~~~~i~~~~~d~v~~k~~~~GGi~~~~~ 222 (265)
T cd03315 152 LEDLG-----LDYVEQPLPA----DDLEGRAALARATDTPIMADESAFTPHDAFRELALGAADAVNIKTAKTGGLTKAQR 222 (265)
T ss_pred HHhcC-----CCEEECCCCc----ccHHHHHHHHhhCCCCEEECCCCCCHHHHHHHHHhCCCCEEEEecccccCHHHHHH
Confidence 44444 4445655432 2356777788776555 334456788889888888889999998776543 12267
Q ss_pred hHHHHHHhCCeEEEcccCcccc
Q 022968 198 IIPLCRELGIGIVAYSPLGRGF 219 (289)
Q Consensus 198 ~~~~~~~~gi~v~a~~pl~~G~ 219 (289)
+.+.|+++|+.++..+.+..++
T Consensus 223 ~~~~A~~~gi~~~~~~~~~s~i 244 (265)
T cd03315 223 VLAVAEALGLPVMVGSMIESGL 244 (265)
T ss_pred HHHHHHHcCCcEEecCccchHH
Confidence 8999999999998876655443
No 24
>PRK08392 hypothetical protein; Provisional
Probab=87.35 E-value=16 Score=30.64 Aligned_cols=145 Identities=14% Similarity=0.121 Sum_probs=70.8
Q ss_pred HHHHHHHHHHHcCCCeEeCCcCcCCCChhHHHHHHHHhc----CCCCCEEE--EecccccccCCcccCCCCCHHHHHHHH
Q 022968 43 VGCSIIKETFNRGITLFDTSDVYGVDHDNEIMVGKALKQ----LPRDKIQL--ATKFGCFMLDGVSIGVKGSPEYVRKCC 116 (289)
Q Consensus 43 ~~~~~l~~A~~~Gi~~~DtA~~Yg~~g~se~~lg~~l~~----~~R~~~~I--~tK~~~~~~~~~~~~~~~~~~~i~~~~ 116 (289)
...++++.|.+.|++.+=.+++.-. .....+-..+++ ..+.++.| ..-++... + . .+..
T Consensus 15 ~~~e~v~~A~~~Gl~~i~iTdH~~~--~~~~~~~~y~~~i~~l~~~~~i~il~GiE~~~~~--------~-~----~~~~ 79 (215)
T PRK08392 15 SVRDNIAEAERKGLRLVGISDHIHY--FTPSKFNAYINEIRQWGEESEIVVLAGIEANITP--------N-G----VDIT 79 (215)
T ss_pred CHHHHHHHHHHcCCCEEEEccCCCc--cchhhHHHHHHHHHHHhhccCceEEEeEEeeecC--------C-c----chhH
Confidence 3678899999999999977766521 011112222221 11223322 22222111 1 1 1223
Q ss_pred HHHHHHcCCCcccEEeecCCCCCCCHHHHHHHHHHHHHcCccceeecCCC-------C-HHHHHHHH----ccC-CceEE
Q 022968 117 EASLKRLDVDYIDLYYQHRVDTSVSIEDTMGELKKLVEEGKIKYIGLSEA-------S-ADTIRRAH----AVH-PITAV 183 (289)
Q Consensus 117 ~~sL~~L~~~~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~iGvs~~-------~-~~~l~~~~----~~~-~~~~~ 183 (289)
++.+++ .||+ +.-+|.+......++-++.+.++.+.+.+.-+|=-.. . .+.+.+++ +.. .+.+|
T Consensus 80 ~~~~~~--~D~v-I~SvH~~~~~~~~~~Y~~~~~~~~~~~~~dvlgH~d~~~~~~~~~~~~~~~~i~~~~~~~g~~lEiN 156 (215)
T PRK08392 80 DDFAKK--LDYV-IASVHEWFGRPEHHEYIELVKLALMDENVDIIGHFGNSFPYIGYPSEEELKEILDLAEAYGKAFEIS 156 (215)
T ss_pred HHHHhh--CCEE-EEEeecCcCCcHHHHHHHHHHHHHhcCCCCEEeCCCccccCCCCchHHHHHHHHHHHHHhCCEEEEe
Confidence 334443 3444 5556844332334566788888888887666553221 1 12222222 222 22222
Q ss_pred eccCCCCCcchhhhhHHHHHHhCCeEE
Q 022968 184 QMEYSLWTREIEDDIIPLCRELGIGIV 210 (289)
Q Consensus 184 q~~~~~~~~~~~~~~~~~~~~~gi~v~ 210 (289)
- ..+.+..++++.|++.|+.++
T Consensus 157 t-----~~~~p~~~~l~~~~~~G~~~~ 178 (215)
T PRK08392 157 S-----RYRVPDLEFIRECIKRGIKLT 178 (215)
T ss_pred C-----CCCCCCHHHHHHHHHcCCEEE
Confidence 1 112233578889999987654
No 25
>cd03316 MR_like Mandelate racemase (MR)-like subfamily of the enolase superfamily. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. Members of the MR subgroup are mandelate racemase, D-glucarate/L-idarate dehydratase (GlucD), D-altronate/D-mannonate dehydratase , D-galactonate dehydratase (GalD) , D-gluconate dehydratase (GlcD), and L-rhamnonate dehydratase (RhamD).
Probab=87.35 E-value=22 Score=32.20 Aligned_cols=155 Identities=12% Similarity=0.091 Sum_probs=92.2
Q ss_pred CHHHHHHHHHHHHHcCCCeEeCC--cCcCCC--ChhHHHHHHHHhcCCCCCEEEEecccccccCCcccCCCCCHHHHHHH
Q 022968 40 SHEVGCSIIKETFNRGITLFDTS--DVYGVD--HDNEIMVGKALKQLPRDKIQLATKFGCFMLDGVSIGVKGSPEYVRKC 115 (289)
Q Consensus 40 ~~~~~~~~l~~A~~~Gi~~~DtA--~~Yg~~--g~se~~lg~~l~~~~R~~~~I~tK~~~~~~~~~~~~~~~~~~~i~~~ 115 (289)
+.++..+.++.+.+.|++.|-.- ..|... -..+...=+++++.-.+++.|...... .++.+...
T Consensus 139 ~~~~~~~~a~~~~~~Gf~~~Kik~g~~~~~~~~~~~d~~~v~~ir~~~g~~~~l~vDaN~----------~~~~~~a~-- 206 (357)
T cd03316 139 SPEELAEEAKRAVAEGFTAVKLKVGGPDSGGEDLREDLARVRAVREAVGPDVDLMVDANG----------RWDLAEAI-- 206 (357)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEcCCCCCcchHHHHHHHHHHHHHHHhhCCCCEEEEECCC----------CCCHHHHH--
Confidence 46777888888899999998643 222100 001122223444322345555555421 24544433
Q ss_pred HHHHHHHcCCCcccEEeecCCCCCCCHHHHHHHHHHHHHcCccc-eeecCCCCHHHHHHHHccCCceEEeccCCCCCcc-
Q 022968 116 CEASLKRLDVDYIDLYYQHRVDTSVSIEDTMGELKKLVEEGKIK-YIGLSEASADTIRRAHAVHPITAVQMEYSLWTRE- 193 (289)
Q Consensus 116 ~~~sL~~L~~~~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir-~iGvs~~~~~~l~~~~~~~~~~~~q~~~~~~~~~- 193 (289)
+-+++|. ..++.+++.|-+. +.++.+.+|++.-.+. ..|=|-++.+.+.++++...++++|+.....-.-
T Consensus 207 --~~~~~l~--~~~i~~iEqP~~~----~~~~~~~~l~~~~~ipi~~dE~~~~~~~~~~~i~~~~~d~v~~k~~~~GGi~ 278 (357)
T cd03316 207 --RLARALE--EYDLFWFEEPVPP----DDLEGLARLRQATSVPIAAGENLYTRWEFRDLLEAGAVDIIQPDVTKVGGIT 278 (357)
T ss_pred --HHHHHhC--ccCCCeEcCCCCc----cCHHHHHHHHHhCCCCEEeccccccHHHHHHHHHhCCCCEEecCccccCCHH
Confidence 3333442 2345556666432 2467778888876555 3334567889999999888889999986665321
Q ss_pred hhhhhHHHHHHhCCeEEEccc
Q 022968 194 IEDDIIPLCRELGIGIVAYSP 214 (289)
Q Consensus 194 ~~~~~~~~~~~~gi~v~a~~p 214 (289)
...++...|+++|+.++..+.
T Consensus 279 ~~~~i~~~a~~~g~~~~~~~~ 299 (357)
T cd03316 279 EAKKIAALAEAHGVRVAPHGA 299 (357)
T ss_pred HHHHHHHHHHHcCCeEeccCC
Confidence 226899999999999876553
No 26
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=86.54 E-value=11 Score=32.34 Aligned_cols=106 Identities=19% Similarity=0.166 Sum_probs=67.8
Q ss_pred CCCHHHHHHHHHHHHHHcCCCcccEEeecCCCCCCCHHHHHHHHHHHHHcC-ccceeecCCCCHHHHHHHHccCCceEEe
Q 022968 106 KGSPEYVRKCCEASLKRLDVDYIDLYYQHRVDTSVSIEDTMGELKKLVEEG-KIKYIGLSEASADTIRRAHAVHPITAVQ 184 (289)
Q Consensus 106 ~~~~~~i~~~~~~sL~~L~~~~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G-~ir~iGvs~~~~~~l~~~~~~~~~~~~q 184 (289)
..+.+...+-+ +.|..+|+++|++-..-.+...-...+.++.++.+++.+ .++...++....+.++.+.+. .++.++
T Consensus 15 ~~s~e~~~~i~-~~L~~~GV~~IEvg~~~~~~~~p~~~~~~~~i~~l~~~~~~~~~~~l~~~~~~~i~~a~~~-g~~~i~ 92 (265)
T cd03174 15 TFSTEDKLEIA-EALDEAGVDSIEVGSGASPKAVPQMEDDWEVLRAIRKLVPNVKLQALVRNREKGIERALEA-GVDEVR 92 (265)
T ss_pred CCCHHHHHHHH-HHHHHcCCCEEEeccCcCccccccCCCHHHHHHHHHhccCCcEEEEEccCchhhHHHHHhC-CcCEEE
Confidence 34666655555 457789999988866544322111245688889999988 677777776666667776664 355666
Q ss_pred ccCCCCC--------c------chhhhhHHHHHHhCCeEEEcc
Q 022968 185 MEYSLWT--------R------EIEDDIIPLCRELGIGIVAYS 213 (289)
Q Consensus 185 ~~~~~~~--------~------~~~~~~~~~~~~~gi~v~a~~ 213 (289)
+.+..-+ + +...+.+++++++|+.+...-
T Consensus 93 i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~ 135 (265)
T cd03174 93 IFDSASETHSRKNLNKSREEDLENAEEAIEAAKEAGLEVEGSL 135 (265)
T ss_pred EEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEE
Confidence 6554431 1 111567888999998876544
No 27
>cd02070 corrinoid_protein_B12-BD B12 binding domain of corrinoid proteins. A family of small methanogenic corrinoid proteins that bind methyl-Co(III) 5-hydroxybenzimidazolylcobamide as a cofactor. They play a role on the methanogenesis from trimethylamine, dimethylamine or monomethylamine, which is initiated by a series of corrinoid-dependent methyltransferases.
Probab=86.29 E-value=12 Score=31.12 Aligned_cols=145 Identities=12% Similarity=0.091 Sum_probs=86.6
Q ss_pred CHHHHHHHHHHHHHcCCCeEeCCcCcCCCChhHHHHHHHHhc----CCCCCEEEEecccccccCCcccCCCCCHHHHHHH
Q 022968 40 SHEVGCSIIKETFNRGITLFDTSDVYGVDHDNEIMVGKALKQ----LPRDKIQLATKFGCFMLDGVSIGVKGSPEYVRKC 115 (289)
Q Consensus 40 ~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~~g~se~~lg~~l~~----~~R~~~~I~tK~~~~~~~~~~~~~~~~~~~i~~~ 115 (289)
|..++.+++..+++.|+...|. | +..+..+++. -.++++++.-=. ...+.+++.
T Consensus 9 D~~~~~~~v~~~l~~g~~~~~i---~------~~~l~p~m~~vG~~w~~~~i~va~e~-------------~as~~~~~~ 66 (201)
T cd02070 9 DEEETVELVKKALEAGIDPQDI---I------EEGLAPGMDIVGDKYEEGEIFVPELL-------------MAADAMKAG 66 (201)
T ss_pred CHHHHHHHHHHHHHcCCCHHHH---H------HHHHHHHHHHHHHHHccCCeeHHHHH-------------HHHHHHHHH
Confidence 7889999999999999866552 2 2234444433 133445443321 223344444
Q ss_pred HHHHHHHcCCCc---ccEEeecCCCCCCCHHHHHHHHHHHHHcCc-cceeecCCCCHHHHHHHHccCCceEEeccCCCCC
Q 022968 116 CEASLKRLDVDY---IDLYYQHRVDTSVSIEDTMGELKKLVEEGK-IKYIGLSEASADTIRRAHAVHPITAVQMEYSLWT 191 (289)
Q Consensus 116 ~~~sL~~L~~~~---iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~-ir~iGvs~~~~~~l~~~~~~~~~~~~q~~~~~~~ 191 (289)
+......+.... ---+++-.+..+...-...=.-.-|+..|. |.++| .+.+.+.+.+.+....|+++-+.+..-.
T Consensus 67 l~~l~~~~~~~~~~~~~~vl~~~~~gd~H~lG~~~v~~~l~~~G~~vi~lG-~~~p~~~l~~~~~~~~~d~v~lS~~~~~ 145 (201)
T cd02070 67 LDLLKPLLGKSKSAKKGKVVIGTVEGDIHDIGKNLVATMLEANGFEVIDLG-RDVPPEEFVEAVKEHKPDILGLSALMTT 145 (201)
T ss_pred HHHHHHHHhhcCCCCCCeEEEEecCCccchHHHHHHHHHHHHCCCEEEECC-CCCCHHHHHHHHHHcCCCEEEEeccccc
Confidence 444444443322 123455555444433333334456778888 78889 6677888888888888899888876544
Q ss_pred cc-hhhhhHHHHHHhCC
Q 022968 192 RE-IEDDIIPLCRELGI 207 (289)
Q Consensus 192 ~~-~~~~~~~~~~~~gi 207 (289)
.. .-.++++.+++.+.
T Consensus 146 ~~~~~~~~i~~lr~~~~ 162 (201)
T cd02070 146 TMGGMKEVIEALKEAGL 162 (201)
T ss_pred cHHHHHHHHHHHHHCCC
Confidence 42 22678888887753
No 28
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=86.07 E-value=4.1 Score=33.70 Aligned_cols=150 Identities=20% Similarity=0.240 Sum_probs=93.8
Q ss_pred HHHHHHHHcCCCeEeCCcCcCCCChhHHHHHHHHhcCCCCCEEEEecccccccCCcccCCCCCHHHHHHHHHH-------
Q 022968 46 SIIKETFNRGITLFDTSDVYGVDHDNEIMVGKALKQLPRDKIQLATKFGCFMLDGVSIGVKGSPEYVRKCCEA------- 118 (289)
Q Consensus 46 ~~l~~A~~~Gi~~~DtA~~Yg~~g~se~~lg~~l~~~~R~~~~I~tK~~~~~~~~~~~~~~~~~~~i~~~~~~------- 118 (289)
+++..-++-|-+.+|-.-..| .+-+.|++ .++ +.. .| -..+.+.+.+++.+
T Consensus 5 ~~I~~~I~pgsrVLDLGCGdG-------~LL~~L~~-~k~-v~g---~G----------vEid~~~v~~cv~rGv~Viq~ 62 (193)
T PF07021_consen 5 QIIAEWIEPGSRVLDLGCGDG-------ELLAYLKD-EKQ-VDG---YG----------VEIDPDNVAACVARGVSVIQG 62 (193)
T ss_pred HHHHHHcCCCCEEEecCCCch-------HHHHHHHH-hcC-CeE---EE----------EecCHHHHHHHHHcCCCEEEC
Confidence 456667788889998766444 24456653 111 111 01 12456666666544
Q ss_pred ----HHHHcCCCcccEEeecCCCCCCCHHHHHHHHHHHHHcCccceeecCCCCHHHHHHHHc--cCCceEEeccCCCCCc
Q 022968 119 ----SLKRLDVDYIDLYYQHRVDTSVSIEDTMGELKKLVEEGKIKYIGLSEASADTIRRAHA--VHPITAVQMEYSLWTR 192 (289)
Q Consensus 119 ----sL~~L~~~~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~~~--~~~~~~~q~~~~~~~~ 192 (289)
.|....-+.+|.+.|... -.....-.+.|+++.+=|+---+++.||..+.....+- -.-|..-.++|+-++.
T Consensus 63 Dld~gL~~f~d~sFD~VIlsqt--LQ~~~~P~~vL~EmlRVgr~~IVsFPNFg~W~~R~~l~~~GrmPvt~~lPy~WYdT 140 (193)
T PF07021_consen 63 DLDEGLADFPDQSFDYVILSQT--LQAVRRPDEVLEEMLRVGRRAIVSFPNFGHWRNRLQLLLRGRMPVTKALPYEWYDT 140 (193)
T ss_pred CHHHhHhhCCCCCccEEehHhH--HHhHhHHHHHHHHHHHhcCeEEEEecChHHHHHHHHHHhcCCCCCCCCCCCcccCC
Confidence 444444445555554421 11223345668888899998889999998887665433 2335556788887665
Q ss_pred ch-----hhhhHHHHHHhCCeEEEcccCcccc
Q 022968 193 EI-----EDDIIPLCRELGIGIVAYSPLGRGF 219 (289)
Q Consensus 193 ~~-----~~~~~~~~~~~gi~v~a~~pl~~G~ 219 (289)
.. -.++.++|++.|+.|.-..++..+.
T Consensus 141 PNih~~Ti~DFe~lc~~~~i~I~~~~~~~~~~ 172 (193)
T PF07021_consen 141 PNIHLCTIKDFEDLCRELGIRIEERVFLDGGR 172 (193)
T ss_pred CCcccccHHHHHHHHHHCCCEEEEEEEEcCCC
Confidence 31 2789999999999999999988664
No 29
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=81.47 E-value=9.7 Score=35.20 Aligned_cols=81 Identities=15% Similarity=0.133 Sum_probs=50.9
Q ss_pred HHHHHHHHHHHHcCCCeEeCCcCcCCCChhHHHHHHHHhcCCCCCEEEEecccccccCCcccCCCCCHHHHHHHHHHHHH
Q 022968 42 EVGCSIIKETFNRGITLFDTSDVYGVDHDNEIMVGKALKQLPRDKIQLATKFGCFMLDGVSIGVKGSPEYVRKCCEASLK 121 (289)
Q Consensus 42 ~~~~~~l~~A~~~Gi~~~DtA~~Yg~~g~se~~lg~~l~~~~R~~~~I~tK~~~~~~~~~~~~~~~~~~~i~~~~~~sL~ 121 (289)
.....++++|++.|++++|||.+.- ....+.... .+..+.+..-+|..+ ..+--.....+++-.+
T Consensus 79 ~~~~~i~ka~i~~gv~yvDts~~~~----~~~~~~~~a---~~Agit~v~~~G~dP--------Gi~nv~a~~a~~~~~~ 143 (389)
T COG1748 79 FVDLTILKACIKTGVDYVDTSYYEE----PPWKLDEEA---KKAGITAVLGCGFDP--------GITNVLAAYAAKELFD 143 (389)
T ss_pred hhhHHHHHHHHHhCCCEEEcccCCc----hhhhhhHHH---HHcCeEEEcccCcCc--------chHHHHHHHHHHHhhc
Confidence 3456899999999999999996554 222222222 345566676666543 2333333333333222
Q ss_pred HcCCCcccEEeecCCCCC
Q 022968 122 RLDVDYIDLYYQHRVDTS 139 (289)
Q Consensus 122 ~L~~~~iDl~~lh~~~~~ 139 (289)
.++++|+|..+.|+..
T Consensus 144 --~i~si~iy~g~~g~~~ 159 (389)
T COG1748 144 --EIESIDIYVGGLGEHG 159 (389)
T ss_pred --cccEEEEEEecCCCCC
Confidence 5899999999998765
No 30
>PRK08609 hypothetical protein; Provisional
Probab=80.68 E-value=40 Score=32.96 Aligned_cols=150 Identities=15% Similarity=0.185 Sum_probs=78.0
Q ss_pred HHHHHHHHHHcCCCeEeCCcCcCC----CChhHHHHHHH------Hhc-CCCCCEEEEecccccccCCcccCCCCCHHHH
Q 022968 44 GCSIIKETFNRGITLFDTSDVYGV----DHDNEIMVGKA------LKQ-LPRDKIQLATKFGCFMLDGVSIGVKGSPEYV 112 (289)
Q Consensus 44 ~~~~l~~A~~~Gi~~~DtA~~Yg~----~g~se~~lg~~------l~~-~~R~~~~I~tK~~~~~~~~~~~~~~~~~~~i 112 (289)
..++++.|.+.|+..+=.++|+.. .|.+...+-.. +++ ...=+|++..-+.... +.+.
T Consensus 351 leemv~~A~~~Gl~~i~iTdH~~~~~~~~~~~~~~l~~~~~ei~~l~~~~~~i~Il~GiEv~i~~--------~g~~--- 419 (570)
T PRK08609 351 IEEMVEACIAKGYEYMAITDHSQYLKVANGLTEERLLEQAEEIKALNEKYPEIDILSGIEMDILP--------DGSL--- 419 (570)
T ss_pred HHHHHHHHHHCCCCEEEEeCCCCCccccCCCCHHHHHHHHHHHHHHHHhcCCCeEEEEEEEeecC--------Ccch---
Confidence 455999999999999988887521 02233333322 222 1111233333332211 1111
Q ss_pred HHHHHHHHHHcCCCcccEEeecCCCCCCCHHHHHHHHHHHHHcCccceeecCC---------CC--HHHHHHHHccCCce
Q 022968 113 RKCCEASLKRLDVDYIDLYYQHRVDTSVSIEDTMGELKKLVEEGKIKYIGLSE---------AS--ADTIRRAHAVHPIT 181 (289)
Q Consensus 113 ~~~~~~sL~~L~~~~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~iGvs~---------~~--~~~l~~~~~~~~~~ 181 (289)
.-.+..|+. .||+ +.-+|++.. .+.++.++.+.++.+.|.+.-||=-. +. .+.+.+++.... .
T Consensus 420 -d~~~~~L~~--~D~v-I~SvH~~~~-~~~~~~~~~l~~a~~~~~~dILaHpd~rli~~~~~~~~d~~~i~~~a~~~G-~ 493 (570)
T PRK08609 420 -DYDDEVLAE--LDYV-IAAIHSSFS-QSEEEIMKRLENACRNPYVRLIAHPTGRLIGRRDGYDVNIDQLIELAKETN-T 493 (570)
T ss_pred -hhcHHHHHh--hCEE-EEEeecCCC-CCHHHHHHHHHHHhcCCCceEEECCCccccccCCCchHHHHHHHHHHHHhC-C
Confidence 122234443 3554 566686532 35567788888888888877665433 11 122223322222 2
Q ss_pred EEeccCCCCCcchhhhhHHHHHHhCCeEE
Q 022968 182 AVQMEYSLWTREIEDDIIPLCRELGIGIV 210 (289)
Q Consensus 182 ~~q~~~~~~~~~~~~~~~~~~~~~gi~v~ 210 (289)
++|+.-+.+.......++..|.+.|+.+.
T Consensus 494 ~lEINa~~~r~~~~~~~~~~~~e~Gv~i~ 522 (570)
T PRK08609 494 ALELNANPNRLDLSAEHLKKAQEAGVKLA 522 (570)
T ss_pred EEEEcCCccccCccHHHHHHHHHcCCEEE
Confidence 45555444433334678888888888643
No 31
>cd00739 DHPS DHPS subgroup of Pterin binding enzymes. DHPS (dihydropteroate synthase), a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS.
Probab=80.13 E-value=39 Score=29.35 Aligned_cols=142 Identities=18% Similarity=0.171 Sum_probs=80.8
Q ss_pred CCHHHHHHHHHHHHHHcCCCcccEEee-cCCCCC-CCHHH----HHHHHHHHHHcCccceeecCCCCHHHHHHHHccCCc
Q 022968 107 GSPEYVRKCCEASLKRLDVDYIDLYYQ-HRVDTS-VSIED----TMGELKKLVEEGKIKYIGLSEASADTIRRAHAVHPI 180 (289)
Q Consensus 107 ~~~~~i~~~~~~sL~~L~~~~iDl~~l-h~~~~~-~~~~~----~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~~~~~~~ 180 (289)
.+.+.+.+..++-+ +-|-+.||+-.- .+|... .+.++ +...++.+++.-.+- +.+-+++++.++++++....
T Consensus 21 ~~~~~~~~~a~~~~-~~GAdiIDIG~~st~p~~~~i~~~~E~~rl~~~v~~i~~~~~~p-lSIDT~~~~v~e~al~~G~~ 98 (257)
T cd00739 21 LSLDKAVAHAEKMI-AEGADIIDIGGESTRPGADPVSVEEELERVIPVLEALRGELDVL-ISVDTFRAEVARAALEAGAD 98 (257)
T ss_pred CCHHHHHHHHHHHH-HCCCCEEEECCCcCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCc-EEEeCCCHHHHHHHHHhCCC
Confidence 45666666665554 468899998532 234332 23333 334456666653443 78889999999999987643
Q ss_pred eEEeccCCCCCcchhhhhHHHHHHhCCeEEEcccCccccCCCCCCCCCCCcchhhhcCCCCCccchHHHHHHHHHHHHHH
Q 022968 181 TAVQMEYSLWTREIEDDIIPLCRELGIGIVAYSPLGRGFFAGKAVVESLPSESILAMHPRFSGENLEKNKLLYTRLETLA 260 (289)
Q Consensus 181 ~~~q~~~~~~~~~~~~~~~~~~~~~gi~v~a~~pl~~G~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ia 260 (289)
-+ +..+....+ .++++.++++|..++.+.. .|. +.... ..+.| ....+.....+++.-+.|
T Consensus 99 iI--Ndisg~~~~--~~~~~l~~~~~~~vV~m~~--~g~------p~~~~------~~~~~-~~~~~~~~~~~~~~i~~~ 159 (257)
T cd00739 99 II--NDVSGGSDD--PAMLEVAAEYGAPLVLMHM--RGT------PKTMQ------ENPYY-EDVVDEVLSFLEARLEAA 159 (257)
T ss_pred EE--EeCCCCCCC--hHHHHHHHHcCCCEEEECC--CCC------Ccccc------cCCCc-ccHHHHHHHHHHHHHHHH
Confidence 33 333443322 5789999999999998443 221 00000 00111 112344445555666777
Q ss_pred HHhCCCHHH
Q 022968 261 AKYGCTTPQ 269 (289)
Q Consensus 261 ~~~g~s~~q 269 (289)
.++|++..+
T Consensus 160 ~~~Gi~~~~ 168 (257)
T cd00739 160 ESAGVARNR 168 (257)
T ss_pred HHcCCCHHH
Confidence 888876444
No 32
>COG4130 Predicted sugar epimerase [Carbohydrate transport and metabolism]
Probab=79.21 E-value=15 Score=30.90 Aligned_cols=82 Identities=20% Similarity=0.317 Sum_probs=53.3
Q ss_pred CCHHHHHHHHccCCceEEe----ccCCCCCcch---hhhhHHHHHHhCCeEEEcccCccccCCCCCCCCCCCcchhhhcC
Q 022968 166 ASADTIRRAHAVHPITAVQ----MEYSLWTREI---EDDIIPLCRELGIGIVAYSPLGRGFFAGKAVVESLPSESILAMH 238 (289)
Q Consensus 166 ~~~~~l~~~~~~~~~~~~q----~~~~~~~~~~---~~~~~~~~~~~gi~v~a~~pl~~G~L~~~~~~~~~~~~~~~~~~ 238 (289)
.++.+++.+.+.....++- .+||.++... ..++.++++.-|-.-+.+.|+..|--.+.
T Consensus 49 ~p~a~vka~Aek~Gl~IvSINAlypFn~wt~~~~a~a~~la~yA~acGA~aLvlcPlNd~s~~~~--------------- 113 (272)
T COG4130 49 TPAAEVKALAEKAGLTIVSINALYPFNEWTEERVAEARGLADYAAACGAKALVLCPLNDGSWPGT--------------- 113 (272)
T ss_pred CCHHHHHHHHHHcCcEEEEeeccccccccChHHHHHHHHHHHHHHhcCCceEEEEeccCCCCCCc---------------
Confidence 3456666665554433332 2677766542 26799999999999999999987542111
Q ss_pred CCCCccchHHHHHHHHHHHHHHHHhCCC
Q 022968 239 PRFSGENLEKNKLLYTRLETLAAKYGCT 266 (289)
Q Consensus 239 ~~~~~~~~~~~~~~~~~l~~ia~~~g~s 266 (289)
....+.....+++|+.|-+++|++
T Consensus 114 ----~vr~~~lv~AlkaLkpil~~~gi~ 137 (272)
T COG4130 114 ----AVRREDLVEALKALKPILDEYGIT 137 (272)
T ss_pred ----ccchHHHHHHHHHhhHHHHHhCcc
Confidence 111344667778888888888874
No 33
>cd00308 enolase_like Enolase-superfamily, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion. Enolase superfamily contains different enzymes, like enolases, glutarate-, fucanate- and galactonate dehydratases, o-succinylbenzoate synthase, N-acylamino acid racemase, L-alanine-DL-glutamate epimerase, mandelate racemase, muconate lactonizing enzyme and 3-methylaspartase.
Probab=79.20 E-value=21 Score=30.12 Aligned_cols=88 Identities=13% Similarity=0.077 Sum_probs=60.9
Q ss_pred ccEEeecCCCCCCCHHHHHHHHHHHHHcCccc-eeecCCCCHHHHHHHHccCCceEEeccCCCCCcc-hhhhhHHHHHHh
Q 022968 128 IDLYYQHRVDTSVSIEDTMGELKKLVEEGKIK-YIGLSEASADTIRRAHAVHPITAVQMEYSLWTRE-IEDDIIPLCREL 205 (289)
Q Consensus 128 iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir-~iGvs~~~~~~l~~~~~~~~~~~~q~~~~~~~~~-~~~~~~~~~~~~ 205 (289)
.++.++..|-+.. .++.+.+|.+...+. ..+=|.++.+.+.+++....++++|+..+.+-.- ...++.++|+++
T Consensus 120 ~~i~~iEeP~~~~----d~~~~~~L~~~~~~pIa~dEs~~~~~~~~~~~~~~~~d~~~~k~~~~GGi~~~~~i~~~a~~~ 195 (229)
T cd00308 120 YGLAWIEEPCAPD----DLEGYAALRRRTGIPIAADESVTTVDDALEALELGAVDILQIKPTRVGGLTESRRAADLAEAF 195 (229)
T ss_pred cCCCeEECCCCcc----CHHHHHHHHhhCCCCEEeCCCCCCHHHHHHHHHcCCCCEEecCccccCCHHHHHHHHHHHHHc
Confidence 4566666664332 356677788777665 3344566778887888878889999987765431 125788999999
Q ss_pred CCeEEEcccCcccc
Q 022968 206 GIGIVAYSPLGRGF 219 (289)
Q Consensus 206 gi~v~a~~pl~~G~ 219 (289)
|+.++..+.+..++
T Consensus 196 gi~~~~~~~~~s~i 209 (229)
T cd00308 196 GIRVMVHGTLESSI 209 (229)
T ss_pred CCEEeecCCCCCHH
Confidence 99999877665443
No 34
>cd00423 Pterin_binding Pterin binding enzymes. This family includes dihydropteroate synthase (DHPS) and cobalamin-dependent methyltransferases such as methyltetrahydrofolate, corrinoid iron-sulfur protein methyltransferase (MeTr) and methionine synthase (MetH). DHPS, a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS. Cobalamin-dependent methyltransferases catalyze the transfer of a methyl group via a methyl- cob(III)amide intermediate. These include MeTr, a functional heterodimer, and the folate binding domain of MetH.
Probab=78.44 E-value=44 Score=28.94 Aligned_cols=103 Identities=19% Similarity=0.163 Sum_probs=66.4
Q ss_pred CCHHHHHHHHHHHHHHcCCCcccEEee-cCCCCC-CC----HHHHHHHHHHHHHcCccceeecCCCCHHHHHHHHccCCc
Q 022968 107 GSPEYVRKCCEASLKRLDVDYIDLYYQ-HRVDTS-VS----IEDTMGELKKLVEEGKIKYIGLSEASADTIRRAHAVHPI 180 (289)
Q Consensus 107 ~~~~~i~~~~~~sL~~L~~~~iDl~~l-h~~~~~-~~----~~~~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~~~~~~~ 180 (289)
.+.+.+.+..++.+ .-|-+.||+-.- .+|... .+ .+.....++.+++.-.+- +.+-+++++.++++++....
T Consensus 21 ~~~~~~~~~a~~~~-~~GAdiIDvG~~st~p~~~~~~~~~E~~rl~~~v~~l~~~~~~p-iSIDT~~~~v~~aaL~~g~~ 98 (258)
T cd00423 21 LSLDKALEHARRMV-EEGADIIDIGGESTRPGAEPVSVEEELERVIPVLRALAGEPDVP-ISVDTFNAEVAEAALKAGAD 98 (258)
T ss_pred CCHHHHHHHHHHHH-HCCCCEEEECCCcCCCCCCcCCHHHHHHHHHHHHHHHHhcCCCe-EEEeCCcHHHHHHHHHhCCC
Confidence 46777777766555 478899998632 334321 11 223456666666553332 78889999999999987643
Q ss_pred eEEeccCCCCCcchhhhhHHHHHHhCCeEEEcccC
Q 022968 181 TAVQMEYSLWTREIEDDIIPLCRELGIGIVAYSPL 215 (289)
Q Consensus 181 ~~~q~~~~~~~~~~~~~~~~~~~~~gi~v~a~~pl 215 (289)
-+ +..+....+ .++++.++++|..++.+..-
T Consensus 99 iI--Ndis~~~~~--~~~~~l~~~~~~~vV~m~~~ 129 (258)
T cd00423 99 II--NDVSGGRGD--PEMAPLAAEYGAPVVLMHMD 129 (258)
T ss_pred EE--EeCCCCCCC--hHHHHHHHHcCCCEEEECcC
Confidence 33 333333222 57899999999999887643
No 35
>PRK13958 N-(5'-phosphoribosyl)anthranilate isomerase; Provisional
Probab=78.35 E-value=7.6 Score=32.59 Aligned_cols=67 Identities=16% Similarity=0.218 Sum_probs=45.4
Q ss_pred HHHHcCCCcccEEeecCCCCCCCHHHHHHHHHHHHHcCccceeecC-CCCHHHHHHHHccCCceEEeccC
Q 022968 119 SLKRLDVDYIDLYYQHRVDTSVSIEDTMGELKKLVEEGKIKYIGLS-EASADTIRRAHAVHPITAVQMEY 187 (289)
Q Consensus 119 sL~~L~~~~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~iGvs-~~~~~~l~~~~~~~~~~~~q~~~ 187 (289)
....+|.|++=+.+........+.+.+ ..+.+.. .+.++.+||. |.+++.+.++++...++++|+.-
T Consensus 16 ~~~~~GaD~iGfIf~~~SpR~V~~~~a-~~i~~~~-~~~~~~VgVf~~~~~~~i~~~~~~~~~d~vQLHG 83 (207)
T PRK13958 16 AASQLPIDAIGFIHYEKSKRHQTITQI-KKLASAV-PNHIDKVCVVVNPDLTTIEHILSNTSINTIQLHG 83 (207)
T ss_pred HHHHcCCCEEEEecCCCCcccCCHHHH-HHHHHhC-CCCCCEEEEEeCCCHHHHHHHHHhCCCCEEEECC
Confidence 344699999998644432233344333 3333322 3568889995 78899999999988999999964
No 36
>TIGR01928 menC_lowGC/arch o-succinylbenzoic acid (OSB) synthetase. This model describes the enzyme o-succinylbenzoic acid synthetase (menC) that is involved in one of the steps of the menaquinone biosynthesis pathway. It takes SHCHC and makes it into 2-succinylbenzoate. Included in this model are low GC gram positive bacteria and archaea. Also included in the seed and in the model are enzymes with the com-name of N-acylamino acid racemase (or the more general term, racemase / racemase family), which refers to the enzyme's industrial application as racemases, and not to its biological function as o-succinylbenzoic acid synthetase.
Probab=78.26 E-value=51 Score=29.59 Aligned_cols=154 Identities=16% Similarity=0.060 Sum_probs=93.2
Q ss_pred CHHHHHHHHHHHHHcCCCeEeCCcCcCCCChhHHHHHHHHhcCCCCCEEEEecccccccCCcccCCCCCHHHHHHHHHHH
Q 022968 40 SHEVGCSIIKETFNRGITLFDTSDVYGVDHDNEIMVGKALKQLPRDKIQLATKFGCFMLDGVSIGVKGSPEYVRKCCEAS 119 (289)
Q Consensus 40 ~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~~g~se~~lg~~l~~~~R~~~~I~tK~~~~~~~~~~~~~~~~~~~i~~~~~~s 119 (289)
+.++..+.+..+.+.|++.|=.-- +. ..+...=+++++.- .++.|.-=.. ..++.+..+ . -+.
T Consensus 132 ~~~~~~~~a~~~~~~Gf~~~KiKv--~~--~~d~~~v~~vr~~~-~~~~l~vDaN----------~~~~~~~a~-~-~~~ 194 (324)
T TIGR01928 132 NDEQMLKQIESLKATGYKRIKLKI--TP--QIMHQLVKLRRLRF-PQIPLVIDAN----------ESYDLQDFP-R-LKE 194 (324)
T ss_pred CHHHHHHHHHHHHHcCCcEEEEEe--CC--chhHHHHHHHHHhC-CCCcEEEECC----------CCCCHHHHH-H-HHH
Confidence 456677888888899999873211 11 12222334444422 2332222211 124554432 1 233
Q ss_pred HHHcCCCcccEEeecCCCCCCCHHHHHHHHHHHHHcCccc-eeecCCCCHHHHHHHHccCCceEEeccCCCCCcc-hhhh
Q 022968 120 LKRLDVDYIDLYYQHRVDTSVSIEDTMGELKKLVEEGKIK-YIGLSEASADTIRRAHAVHPITAVQMEYSLWTRE-IEDD 197 (289)
Q Consensus 120 L~~L~~~~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir-~iGvs~~~~~~l~~~~~~~~~~~~q~~~~~~~~~-~~~~ 197 (289)
|+. .++.++..|-+ .+.++.+.+|++.-.+. ..|=|.++...+..+++...++++|+....+-.- .-.+
T Consensus 195 l~~-----~~~~~iEeP~~----~~~~~~~~~l~~~~~~pia~dEs~~~~~~~~~~~~~~~~dvi~~d~~~~GGit~~~~ 265 (324)
T TIGR01928 195 LDR-----YQLLYIEEPFK----IDDLSMLDELAKGTITPICLDESITSLDDARNLIELGNVKVINIKPGRLGGLTEVQK 265 (324)
T ss_pred Hhh-----CCCcEEECCCC----hhHHHHHHHHHhhcCCCEeeCCCcCCHHHHHHHHHcCCCCEEEeCcchhcCHHHHHH
Confidence 443 34555555432 23467788888876654 5566788999999999888899999987654321 1267
Q ss_pred hHHHHHHhCCeEEEcccCcccc
Q 022968 198 IIPLCRELGIGIVAYSPLGRGF 219 (289)
Q Consensus 198 ~~~~~~~~gi~v~a~~pl~~G~ 219 (289)
+...|+++|+.++..+.+..|+
T Consensus 266 ~~~~A~~~gi~~~~~~~~es~i 287 (324)
T TIGR01928 266 AIETCREHGAKVWIGGMLETGI 287 (324)
T ss_pred HHHHHHHcCCeEEEcceEcccH
Confidence 8999999999998766555554
No 37
>TIGR00190 thiC thiamine biosynthesis protein ThiC. The thiC ortholog is designated thiA in Bacillus subtilis.
Probab=78.21 E-value=35 Score=31.58 Aligned_cols=153 Identities=15% Similarity=0.147 Sum_probs=88.6
Q ss_pred CCHHHHHHHHHHHHHcCCCe-EeCCcCcCCCChhHHHHHHHHhcCCCCCEEEEeccccccc--CCcccCCCCCHHHHHHH
Q 022968 39 LSHEVGCSIIKETFNRGITL-FDTSDVYGVDHDNEIMVGKALKQLPRDKIQLATKFGCFML--DGVSIGVKGSPEYVRKC 115 (289)
Q Consensus 39 ~~~~~~~~~l~~A~~~Gi~~-~DtA~~Yg~~g~se~~lg~~l~~~~R~~~~I~tK~~~~~~--~~~~~~~~~~~~~i~~~ 115 (289)
.+.+.-.+-++.|++.|-.. -|-+. .|+ -..+=-+.|+. ..+-|-| +..... .......+.+.+.+-+.
T Consensus 74 ~d~~~E~~K~~~A~~~GADtiMDLSt-Ggd---l~~iR~~il~~---s~vpvGT-VPiYqa~~~~~~~~~~mt~d~~~~~ 145 (423)
T TIGR00190 74 SDIEEEVEKALIAIKYGADTVMDLST-GGD---LDEIRKAILDA---VPVPVGT-VPIYQAAEKVHGAVEDMDEDDMFRA 145 (423)
T ss_pred CCHHHHHHHHHHHHHcCCCeEeeccC-CCC---HHHHHHHHHHc---CCCCccC-ccHHHHHHHhcCChhhCCHHHHHHH
Confidence 35565667789999999875 46653 332 34333344443 1122222 110000 00011235677777777
Q ss_pred HHHHHHHcCCCcccEEeecCCCCCCCHHHHHHHHHHHHHcCccceeecCCCCHHHHHHHHccCCceEEeccCCCCCcchh
Q 022968 116 CEASLKRLDVDYIDLYYQHRVDTSVSIEDTMGELKKLVEEGKIKYIGLSEASADTIRRAHAVHPITAVQMEYSLWTREIE 195 (289)
Q Consensus 116 ~~~sL~~L~~~~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~~~~~~~~~~q~~~~~~~~~~~ 195 (289)
+++-.+ +-+|.+-+|.-- ..+.++.++++| |..|+-+-.-.-+...+... -.=||+...+
T Consensus 146 ie~qa~----dGVDfmTiH~Gi-------~~~~~~~~~~~~--R~~giVSRGGs~~~~WM~~~------~~ENPlye~f- 205 (423)
T TIGR00190 146 IEKQAK----DGVDFMTIHAGV-------LLEYVERLKRSG--RITGIVSRGGAILAAWMLHH------HKENPLYKNF- 205 (423)
T ss_pred HHHHHH----hCCCEEEEccch-------hHHHHHHHHhCC--CccCeecCcHHHHHHHHHHc------CCcCchHHHH-
Confidence 777666 568899999742 467888999998 45666555544444433321 1224555444
Q ss_pred hhhHHHHHHhCCeEEEcccCccccCCCC
Q 022968 196 DDIIPLCRELGIGIVAYSPLGRGFFAGK 223 (289)
Q Consensus 196 ~~~~~~~~~~gi~v~a~~pl~~G~L~~~ 223 (289)
.++++.|+++++.+ .|+-|+-.|.
T Consensus 206 D~lLeI~~~yDVtl----SLGDglRPG~ 229 (423)
T TIGR00190 206 DYILEIAKEYDVTL----SLGDGLRPGC 229 (423)
T ss_pred HHHHHHHHHhCeee----eccCCcCCCc
Confidence 58999999999998 4566654433
No 38
>COG1140 NarY Nitrate reductase beta subunit [Energy production and conversion]
Probab=76.86 E-value=1.1 Score=40.66 Aligned_cols=54 Identities=20% Similarity=0.350 Sum_probs=34.2
Q ss_pred cCccceeecCCCCHHHHHHHHccCC-ceEEeccCCCCCcchhhhhHHHHHHhCCe
Q 022968 155 EGKIKYIGLSEASADTIRRAHAVHP-ITAVQMEYSLWTREIEDDIIPLCRELGIG 208 (289)
Q Consensus 155 ~G~ir~iGvs~~~~~~l~~~~~~~~-~~~~q~~~~~~~~~~~~~~~~~~~~~gi~ 208 (289)
-|+|||+||--++++++.++..... -+..+.+..++....+..+++.|++.||+
T Consensus 263 VGriRYlGVlLYDaDrv~eaAs~~~e~dly~~Q~~ifLDP~DP~Vi~~A~k~Gip 317 (513)
T COG1140 263 VGRIRYLGVLLYDADRVEEAASTENEKDLYERQLDVFLDPHDPAVIEQARKDGIP 317 (513)
T ss_pred hcceeeeeeeeecHHHHHHhhcCccHHHHHHHHHhhhcCCCCHHHHHHHHHcCCc
Confidence 4999999999999999988866422 22222333333222235667777777764
No 39
>cd03323 D-glucarate_dehydratase D-Glucarate dehydratase (GlucD) catalyzes the dehydration of both D-glucarate and L-idarate to form 5-keto-4-deoxy-D-glucarate (5-KDG) , the initial reaction of the catabolic pathway for (D)-glucarate. GlucD belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and that is stabilized by coordination to the essential Mg2+ ion.
Probab=76.85 E-value=63 Score=29.95 Aligned_cols=151 Identities=14% Similarity=0.073 Sum_probs=91.1
Q ss_pred CHHHHHHHHHHHHH-cCCCeEeCCcCcCCCChhHHHHHHHHhcCCCCCEEEEecccccccCCcccCCCCCHHHHHHHHHH
Q 022968 40 SHEVGCSIIKETFN-RGITLFDTSDVYGVDHDNEIMVGKALKQLPRDKIQLATKFGCFMLDGVSIGVKGSPEYVRKCCEA 118 (289)
Q Consensus 40 ~~~~~~~~l~~A~~-~Gi~~~DtA~~Yg~~g~se~~lg~~l~~~~R~~~~I~tK~~~~~~~~~~~~~~~~~~~i~~~~~~ 118 (289)
+.++..+.++.+.+ .|++.|=.--.-.+ ...+...=+++++.- .++.|..-.. ..++.+... +
T Consensus 168 ~~e~~~~~a~~~~~~~Gf~~~KiKvG~~~-~~~di~~v~avRea~-~~~~l~vDaN----------~~w~~~~A~----~ 231 (395)
T cd03323 168 TPEGVVRLARAAIDRYGFKSFKLKGGVLP-GEEEIEAVKALAEAF-PGARLRLDPN----------GAWSLETAI----R 231 (395)
T ss_pred CHHHHHHHHHHHHHhcCCcEEEEecCCCC-HHHHHHHHHHHHHhC-CCCcEEEeCC----------CCcCHHHHH----H
Confidence 55666777777775 69998753221011 111111223344311 2344433321 124554433 3
Q ss_pred HHHHcCCCcccEEeecCCCCCCCHHHHHHHHHHHHHcCccc-eeecCCCCHHHHHHHHccCCceEEeccCCCCCcc-hhh
Q 022968 119 SLKRLDVDYIDLYYQHRVDTSVSIEDTMGELKKLVEEGKIK-YIGLSEASADTIRRAHAVHPITAVQMEYSLWTRE-IED 196 (289)
Q Consensus 119 sL~~L~~~~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir-~iGvs~~~~~~l~~~~~~~~~~~~q~~~~~~~~~-~~~ 196 (289)
.+++|. . ++.++..|-+ .++.+.+|++...+- ..|=|-++.+++.++++...++++|......-.- ...
T Consensus 232 ~~~~l~--~-~l~~iEeP~~------d~~~~~~L~~~~~~PIa~dEs~~~~~~~~~~i~~~avdil~~d~~~~GGit~~~ 302 (395)
T cd03323 232 LAKELE--G-VLAYLEDPCG------GREGMAEFRRATGLPLATNMIVTDFRQLGHAIQLNAVDIPLADHHFWGGMRGSV 302 (395)
T ss_pred HHHhcC--c-CCCEEECCCC------CHHHHHHHHHhcCCCEEcCCcccCHHHHHHHHHcCCCcEEeeccccccCHHHHH
Confidence 334553 2 6666666543 477888888887655 5566777888999998888899999987654321 126
Q ss_pred hhHHHHHHhCCeEEEcccC
Q 022968 197 DIIPLCRELGIGIVAYSPL 215 (289)
Q Consensus 197 ~~~~~~~~~gi~v~a~~pl 215 (289)
++.+.|+++|+.+...+..
T Consensus 303 kia~~A~~~gi~~~~h~~~ 321 (395)
T cd03323 303 RVAQVCETWGLGWGMHSNN 321 (395)
T ss_pred HHHHHHHHcCCeEEEecCc
Confidence 8999999999999887654
No 40
>PRK07379 coproporphyrinogen III oxidase; Provisional
Probab=76.57 E-value=14 Score=34.43 Aligned_cols=59 Identities=17% Similarity=0.080 Sum_probs=33.8
Q ss_pred CHHHHHHHHHHHHHHcCCCcccEEeecC-CCCC-----------CC-HH---HHH-HHHHHHHHcCccceeecCCCCH
Q 022968 108 SPEYVRKCCEASLKRLDVDYIDLYYQHR-VDTS-----------VS-IE---DTM-GELKKLVEEGKIKYIGLSEASA 168 (289)
Q Consensus 108 ~~~~i~~~~~~sL~~L~~~~iDl~~lh~-~~~~-----------~~-~~---~~~-~~l~~l~~~G~ir~iGvs~~~~ 168 (289)
+.+.+++.++..+ +|+.++|.+|.+.- |... .+ .+ +.+ .+.+.|.+.|.. ++++|||..
T Consensus 180 t~e~~~~tl~~~~-~l~p~~is~y~L~~~pgT~l~~~~~~g~~~~~~~~~~~~~~~~~~~~L~~~Gy~-~yeisnfa~ 255 (400)
T PRK07379 180 TLEDWQASLEAAI-ALNPTHLSCYDLVLEPGTAFGKQYQPGKAPLPSDETTAAMYRLAQEILTQAGYE-HYEISNYAK 255 (400)
T ss_pred CHHHHHHHHHHHH-cCCCCEEEEecceecCCchhHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHcCCc-eeeeeheEC
Confidence 5566666665444 36777777776652 2110 01 11 122 466678888875 589999864
No 41
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=74.65 E-value=60 Score=28.58 Aligned_cols=151 Identities=13% Similarity=0.124 Sum_probs=89.1
Q ss_pred CHHHHHHHHHHHHHcCCCeEeCC----------cCcCCCChhHHHHHHHHhcCCCC-CEEEEecccccccCCcccCCCCC
Q 022968 40 SHEVGCSIIKETFNRGITLFDTS----------DVYGVDHDNEIMVGKALKQLPRD-KIQLATKFGCFMLDGVSIGVKGS 108 (289)
Q Consensus 40 ~~~~~~~~l~~A~~~Gi~~~DtA----------~~Yg~~g~se~~lg~~l~~~~R~-~~~I~tK~~~~~~~~~~~~~~~~ 108 (289)
+.++..+..+.+.+.|+..+|.- ..|+ .+.+.+-+.++...+. ++-|..|+++..
T Consensus 100 ~~~~~~~~a~~~~~~G~d~iElN~~cP~~~~~g~~~~---~~~~~~~eiv~~vr~~~~~Pv~vKl~~~~----------- 165 (296)
T cd04740 100 TVEEFVEVAEKLADAGADAIELNISCPNVKGGGMAFG---TDPEAVAEIVKAVKKATDVPVIVKLTPNV----------- 165 (296)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEECCCCCCCCCccccc---CCHHHHHHHHHHHHhccCCCEEEEeCCCc-----------
Confidence 56778888888888999998851 1233 2556666666653222 577888875321
Q ss_pred HHHHHHHHHHHHHHcCCCcccEEe------ecCCC--C-----------CCCHHHHHHHHHHHHHcCccceeecCCC-CH
Q 022968 109 PEYVRKCCEASLKRLDVDYIDLYY------QHRVD--T-----------SVSIEDTMGELKKLVEEGKIKYIGLSEA-SA 168 (289)
Q Consensus 109 ~~~i~~~~~~sL~~L~~~~iDl~~------lh~~~--~-----------~~~~~~~~~~l~~l~~~G~ir~iGvs~~-~~ 168 (289)
+.+. .+-+.++..|.|.+++.- +|... + .....-.++.+.++++.=.+--||+... ++
T Consensus 166 -~~~~-~~a~~~~~~G~d~i~~~nt~~g~~~~~~~~~~~~~~~~gg~sg~~~~~~~~~~i~~i~~~~~ipii~~GGI~~~ 243 (296)
T cd04740 166 -TDIV-EIARAAEEAGADGLTLINTLKGMAIDIETRKPILGNVTGGLSGPAIKPIALRMVYQVYKAVEIPIIGVGGIASG 243 (296)
T ss_pred -hhHH-HHHHHHHHcCCCEEEEECCCcccccccccCceeecCCcceecCcccchHHHHHHHHHHHhcCCCEEEECCCCCH
Confidence 1222 333456678887776531 11100 0 0001124677777777656888888875 67
Q ss_pred HHHHHHHccCCceEEeccCCCCC-c----chhhhhHHHHHHhCC
Q 022968 169 DTIRRAHAVHPITAVQMEYSLWT-R----EIEDDIIPLCRELGI 207 (289)
Q Consensus 169 ~~l~~~~~~~~~~~~q~~~~~~~-~----~~~~~~~~~~~~~gi 207 (289)
+.+.+++... .+.+|+-=.++. . ....++.++.+++|.
T Consensus 244 ~da~~~l~~G-Ad~V~igra~l~~p~~~~~i~~~l~~~~~~~g~ 286 (296)
T cd04740 244 EDALEFLMAG-ASAVQVGTANFVDPEAFKEIIEGLEAYLDEEGI 286 (296)
T ss_pred HHHHHHHHcC-CCEEEEchhhhcChHHHHHHHHHHHHHHHHcCC
Confidence 8888888754 577776322222 1 122566677777764
No 42
>PRK00164 moaA molybdenum cofactor biosynthesis protein A; Reviewed
Probab=73.66 E-value=67 Score=28.74 Aligned_cols=153 Identities=16% Similarity=0.140 Sum_probs=81.6
Q ss_pred CCCHHHHHHHHHHHHHcCCCeEeCCcCcCCC---ChhHHHHHHHHhcC-CCCCEEEEecccccccCCcccCCCCCHHHHH
Q 022968 38 PLSHEVGCSIIKETFNRGITLFDTSDVYGVD---HDNEIMVGKALKQL-PRDKIQLATKFGCFMLDGVSIGVKGSPEYVR 113 (289)
Q Consensus 38 ~~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~~---g~se~~lg~~l~~~-~R~~~~I~tK~~~~~~~~~~~~~~~~~~~i~ 113 (289)
.++.++..++++.+.+.|++.+.-.. |.| ..-.+++.. +++. .-.++.|+|-... +.
T Consensus 48 ~ls~eei~~~i~~~~~~gi~~I~~tG--GEPll~~~l~~li~~-i~~~~~~~~i~itTNG~l----------------l~ 108 (331)
T PRK00164 48 LLSLEEIERLVRAFVALGVRKVRLTG--GEPLLRKDLEDIIAA-LAALPGIRDLALTTNGYL----------------LA 108 (331)
T ss_pred cCCHHHHHHHHHHHHHCCCCEEEEEC--CCCcCccCHHHHHHH-HHhcCCCceEEEEcCchh----------------HH
Confidence 36889999999999999998876432 221 011222222 3322 1235666664210 11
Q ss_pred HHHHHHHHHcCCCcccEEeecCCCC--------CCCHHHHHHHHHHHHHcCc----cceeecCCCCHHHHHHHHc---cC
Q 022968 114 KCCEASLKRLDVDYIDLYYQHRVDT--------SVSIEDTMGELKKLVEEGK----IKYIGLSEASADTIRRAHA---VH 178 (289)
Q Consensus 114 ~~~~~sL~~L~~~~iDl~~lh~~~~--------~~~~~~~~~~l~~l~~~G~----ir~iGvs~~~~~~l~~~~~---~~ 178 (289)
+.+ +.|...|++.+- +-||..++ ...++.++++++.+++.|. |..+.+...+.+++.++.+ ..
T Consensus 109 ~~~-~~L~~agl~~i~-ISlds~~~e~~~~i~~~~~~~~vl~~i~~~~~~g~~~v~i~~vv~~g~n~~ei~~l~~~~~~~ 186 (331)
T PRK00164 109 RRA-AALKDAGLDRVN-VSLDSLDPERFKAITGRDRLDQVLAGIDAALAAGLTPVKVNAVLMKGVNDDEIPDLLEWAKDR 186 (331)
T ss_pred HHH-HHHHHcCCCEEE-EEeccCCHHHhccCCCCCCHHHHHHHHHHHHHCCCCcEEEEEEEECCCCHHHHHHHHHHHHhC
Confidence 222 334445554432 23444332 2357889999999999985 3344444455555555433 34
Q ss_pred CceEEeccCCCCCcc---------hhhhhHHHHHHhCCeEEE
Q 022968 179 PITAVQMEYSLWTRE---------IEDDIIPLCRELGIGIVA 211 (289)
Q Consensus 179 ~~~~~q~~~~~~~~~---------~~~~~~~~~~~~gi~v~a 211 (289)
++.+.-++|.++... ...++++..+++|+.+..
T Consensus 187 gv~v~~ie~~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 228 (331)
T PRK00164 187 GIQLRFIELMPTGEGNEWFRKHHLSGAEIRARLAERGWTLQP 228 (331)
T ss_pred CCeEEEEEeeECCCCcchhhhcCCCHHHHHHHHHhccCcccc
Confidence 444444555543321 115678888887655433
No 43
>PRK13352 thiamine biosynthesis protein ThiC; Provisional
Probab=73.48 E-value=57 Score=30.36 Aligned_cols=153 Identities=16% Similarity=0.158 Sum_probs=88.3
Q ss_pred CCHHHHHHHHHHHHHcCCCe-EeCCcCcCCCChhHHHHHHHHhcCCCCCEEEEecccccccC-----CcccCCCCCHHHH
Q 022968 39 LSHEVGCSIIKETFNRGITL-FDTSDVYGVDHDNEIMVGKALKQLPRDKIQLATKFGCFMLD-----GVSIGVKGSPEYV 112 (289)
Q Consensus 39 ~~~~~~~~~l~~A~~~Gi~~-~DtA~~Yg~~g~se~~lg~~l~~~~R~~~~I~tK~~~~~~~-----~~~~~~~~~~~~i 112 (289)
.+.+.-.+-++.|++.|-.. -|-+. .|+ -..+--+.|+. .++-|.|= ...... ......+.+.+.+
T Consensus 74 ~d~~~E~~K~~~A~~~GADtiMDLSt-ggd---l~~iR~~il~~---s~vpvGTV-PiYqa~~~~~~k~~~~~~mt~d~~ 145 (431)
T PRK13352 74 SDIEEELEKAKVAVKYGADTIMDLST-GGD---LDEIRRAIIEA---SPVPVGTV-PIYQAAVEAARKYGSVVDMTEDDL 145 (431)
T ss_pred CCHHHHHHHHHHHHHcCCCeEeeccC-CCC---HHHHHHHHHHc---CCCCCcCh-hHHHHHHHHHhcCCChhhCCHHHH
Confidence 35566667799999999875 46553 332 44333444443 11222111 100000 0011235677888
Q ss_pred HHHHHHHHHHcCCCcccEEeecCCCCCCCHHHHHHHHHHHHHcCccceeecCCCCHHHHHHHHccCCceEEeccCCCCCc
Q 022968 113 RKCCEASLKRLDVDYIDLYYQHRVDTSVSIEDTMGELKKLVEEGKIKYIGLSEASADTIRRAHAVHPITAVQMEYSLWTR 192 (289)
Q Consensus 113 ~~~~~~sL~~L~~~~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~~~~~~~~~~q~~~~~~~~ 192 (289)
.+.+++-.+ +-+|.+-+|+-- ..+.++.++++|+ ..|+-+-.-.-+...+.... .=||+..
T Consensus 146 ~~~ie~qa~----~GVDfmTiHcGi-------~~~~~~~~~~~~R--~~giVSRGGs~~~~WM~~n~------~ENPlye 206 (431)
T PRK13352 146 FDVIEKQAK----DGVDFMTIHCGV-------TRETLERLKKSGR--IMGIVSRGGSFLAAWMLHNN------KENPLYE 206 (431)
T ss_pred HHHHHHHHH----hCCCEEEEccch-------hHHHHHHHHhcCC--ccCeecCCHHHHHHHHHHcC------CcCchHH
Confidence 777777666 568999999742 3677889999884 45665555444444332211 2345554
Q ss_pred chhhhhHHHHHHhCCeEEEcccCccccCCCC
Q 022968 193 EIEDDIIPLCRELGIGIVAYSPLGRGFFAGK 223 (289)
Q Consensus 193 ~~~~~~~~~~~~~gi~v~a~~pl~~G~L~~~ 223 (289)
.+ .++++.|+++++.+ .|+.|+-.|.
T Consensus 207 ~f-D~lLeI~~~yDVtl----SLGDglRPG~ 232 (431)
T PRK13352 207 HF-DYLLEILKEYDVTL----SLGDGLRPGC 232 (431)
T ss_pred HH-HHHHHHHHHhCeee----eccCCcCCCc
Confidence 44 68999999999998 4566654333
No 44
>PF03102 NeuB: NeuB family; InterPro: IPR013132 NeuB is the prokaryotic N-acetylneuraminic acid synthase (Neu5Ac). It catalyses the direct formation of Neu5Ac (the most common sialic acid) by condensation of phosphoenolpyruvate (PEP) and N-acetylmannosamine (ManNAc). This reaction has only been observed in prokaryotes; eukaryotes synthesise the 9-phosphate form, Neu5Ac-9-P, and utilise ManNAc-6-P instead of ManNAc. Such eukaryotic enzymes are not present in this family []. This family also contains SpsE spore coat polysaccharide biosynthesis proteins.; GO: 0016051 carbohydrate biosynthetic process; PDB: 3G8R_B 1XUU_A 1XUZ_A 3CM4_A 2ZDR_A 1VLI_A 2WQP_A.
Probab=73.43 E-value=20 Score=30.86 Aligned_cols=112 Identities=19% Similarity=0.129 Sum_probs=59.2
Q ss_pred CCHHHHHHHHHHHHHcCCCeEeCCcCcCC---------C--------ChhHHHHHHHHhcCCCCCEEEEecccccccCCc
Q 022968 39 LSHEVGCSIIKETFNRGITLFDTSDVYGV---------D--------HDNEIMVGKALKQLPRDKIQLATKFGCFMLDGV 101 (289)
Q Consensus 39 ~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~---------~--------g~se~~lg~~l~~~~R~~~~I~tK~~~~~~~~~ 101 (289)
++.++..++.++|-+.||.||=|.-.... + =.+-.+|-. +. .....++|+|=.
T Consensus 53 l~~e~~~~L~~~~~~~gi~f~stpfd~~s~d~l~~~~~~~~KIaS~dl~n~~lL~~-~A-~tgkPvIlSTG~-------- 122 (241)
T PF03102_consen 53 LSEEQHKELFEYCKELGIDFFSTPFDEESVDFLEELGVPAYKIASGDLTNLPLLEY-IA-KTGKPVILSTGM-------- 122 (241)
T ss_dssp S-HHHHHHHHHHHHHTT-EEEEEE-SHHHHHHHHHHT-SEEEE-GGGTT-HHHHHH-HH-TT-S-EEEE-TT--------
T ss_pred CCHHHHHHHHHHHHHcCCEEEECCCCHHHHHHHHHcCCCEEEeccccccCHHHHHH-HH-HhCCcEEEECCC--------
Confidence 57888999999999999999977653321 0 001111111 11 134456666643
Q ss_pred ccCCCCCHHHHHHHHHHHHHHcCCCcccEEeecCCCCC-CCHH-HHHHHHHHHHHcCccceeecCCCCHH
Q 022968 102 SIGVKGSPEYVRKCCEASLKRLDVDYIDLYYQHRVDTS-VSIE-DTMGELKKLVEEGKIKYIGLSEASAD 169 (289)
Q Consensus 102 ~~~~~~~~~~i~~~~~~sL~~L~~~~iDl~~lh~~~~~-~~~~-~~~~~l~~l~~~G~ir~iGvs~~~~~ 169 (289)
.+.+.|+++++...++- .-++.+||+.... .+.+ --+..+..|++.=- --||+|.|+..
T Consensus 123 -----stl~EI~~Av~~~~~~~---~~~l~llHC~s~YP~~~e~~NL~~i~~L~~~f~-~~vG~SDHt~g 183 (241)
T PF03102_consen 123 -----STLEEIERAVEVLREAG---NEDLVLLHCVSSYPTPPEDVNLRVIPTLKERFG-VPVGYSDHTDG 183 (241)
T ss_dssp -------HHHHHHHHHHHHHHC---T--EEEEEE-SSSS--GGG--TTHHHHHHHHST-SEEEEEE-SSS
T ss_pred -----CCHHHHHHHHHHHHhcC---CCCEEEEecCCCCCCChHHcChHHHHHHHHhcC-CCEEeCCCCCC
Confidence 35677777776553443 3689999997532 2333 34677777775433 56799998864
No 45
>PRK06294 coproporphyrinogen III oxidase; Provisional
Probab=72.78 E-value=20 Score=32.90 Aligned_cols=60 Identities=18% Similarity=0.120 Sum_probs=37.9
Q ss_pred CCHHHHHHHHHHHHHHcCCCcccEEeecC-CCCC-----------CCHH----HHH-HHHHHHHHcCccceeecCCCCH
Q 022968 107 GSPEYVRKCCEASLKRLDVDYIDLYYQHR-VDTS-----------VSIE----DTM-GELKKLVEEGKIKYIGLSEASA 168 (289)
Q Consensus 107 ~~~~~i~~~~~~sL~~L~~~~iDl~~lh~-~~~~-----------~~~~----~~~-~~l~~l~~~G~ir~iGvs~~~~ 168 (289)
-+.+.+++.++..++ |+.+++.+|.+.- |... .+.+ +.+ .+.+.|.+.|. .++++|||..
T Consensus 167 qt~~~~~~~l~~~~~-l~~~~is~y~l~~~~gT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~Gy-~~yeis~fa~ 243 (370)
T PRK06294 167 QSLSDFIVDLHQAIT-LPITHISLYNLTIDPHTSFYKHRKRLLPSIADEEILAEMSLAAEELLTSQGF-TRYELASYAK 243 (370)
T ss_pred CCHHHHHHHHHHHHc-cCCCeEEEeeeEecCCChHHHHHhcCCCCCcCHHHHHHHHHHHHHHHHHcCC-CeeeeeeeeC
Confidence 477788888876664 8899999888763 2210 1111 122 35566777887 4578988863
No 46
>COG0135 TrpF Phosphoribosylanthranilate isomerase [Amino acid transport and metabolism]
Probab=72.00 E-value=28 Score=29.27 Aligned_cols=81 Identities=17% Similarity=0.248 Sum_probs=51.5
Q ss_pred HHcCCCcccEEeecCCCCCCCHHHHHHHHHHHHHcCc-cceeecC-CCCHHHHHHHHccCCceEEeccCCCCCcchhhhh
Q 022968 121 KRLDVDYIDLYYQHRVDTSVSIEDTMGELKKLVEEGK-IKYIGLS-EASADTIRRAHAVHPITAVQMEYSLWTREIEDDI 198 (289)
Q Consensus 121 ~~L~~~~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~-ir~iGvs-~~~~~~l~~~~~~~~~~~~q~~~~~~~~~~~~~~ 198 (289)
..+|.||+=+.+--......+ .+...++.+.-. +..+||. |.+.+.+.++++...++.+|+.-. ...+.
T Consensus 19 ~~~gad~iG~If~~~SpR~Vs----~~~a~~i~~~v~~~~~VgVf~n~~~~~i~~i~~~~~ld~VQlHG~-----e~~~~ 89 (208)
T COG0135 19 AKAGADYIGFIFVPKSPRYVS----PEQAREIASAVPKVKVVGVFVNESIEEILEIAEELGLDAVQLHGD-----EDPEY 89 (208)
T ss_pred HHcCCCEEEEEEcCCCCCcCC----HHHHHHHHHhCCCCCEEEEECCCCHHHHHHHHHhcCCCEEEECCC-----CCHHH
Confidence 358999987755442222233 333344444443 8899996 667888999999999999999644 22455
Q ss_pred HHHHHHhC-CeEE
Q 022968 199 IPLCRELG-IGIV 210 (289)
Q Consensus 199 ~~~~~~~g-i~v~ 210 (289)
++..++.. +.|+
T Consensus 90 ~~~l~~~~~~~v~ 102 (208)
T COG0135 90 IDQLKEELGVPVI 102 (208)
T ss_pred HHHHHhhcCCceE
Confidence 66666553 5554
No 47
>TIGR01502 B_methylAsp_ase methylaspartate ammonia-lyase. This model describes methylaspartate ammonia-lyase, also called beta-methylaspartase (EC 4.3.1.2). It follows methylaspartate mutase (composed of S and E subunits) in one of several possible pathways of glutamate fermentation.
Probab=70.86 E-value=84 Score=29.38 Aligned_cols=86 Identities=12% Similarity=-0.005 Sum_probs=61.2
Q ss_pred cEEeecCCCCCCCHHHHHHHHHHHHHc------CccceeecCCCCHHHHHHHHccCCceEEeccCCCCCcc-hhhhhHHH
Q 022968 129 DLYYQHRVDTSVSIEDTMGELKKLVEE------GKIKYIGLSEASADTIRRAHAVHPITAVQMEYSLWTRE-IEDDIIPL 201 (289)
Q Consensus 129 Dl~~lh~~~~~~~~~~~~~~l~~l~~~------G~ir~iGvs~~~~~~l~~~~~~~~~~~~q~~~~~~~~~-~~~~~~~~ 201 (289)
++ ++..|-+..+.++.++.+.+|++. ..=-..+=|-++.+.+..+++..-.+++|+..+-+-.- ...++.++
T Consensus 265 ~~-~iEqPv~~~d~~~~~e~la~Lr~~~~~~~~~vPI~aDEs~~t~~d~~~~i~~~a~d~v~iK~~k~GGIt~a~kia~l 343 (408)
T TIGR01502 265 HL-RIEGPMDVGSRQAQIEAMADLRAELDGRGVDAEIVADEWCNTVEDVKFFTDAKAGHMVQIKTPDVGGVNNIARAIMY 343 (408)
T ss_pred Ce-EEecCCCCCcchhhHHHHHHHHHHhhcCCCCceEEecCCCCCHHHHHHHHHhCCCCEEEeCccccCCHHHHHHHHHH
Confidence 44 677775433334567777788766 33334455677899999999888899999988765332 22689999
Q ss_pred HHHhCCeEEEcccC
Q 022968 202 CRELGIGIVAYSPL 215 (289)
Q Consensus 202 ~~~~gi~v~a~~pl 215 (289)
|+.+||.++..+..
T Consensus 344 A~~~Gi~~~~g~~~ 357 (408)
T TIGR01502 344 CKANGMGAYVGGTC 357 (408)
T ss_pred HHHcCCEEEEeCCC
Confidence 99999999886554
No 48
>cd03322 rpsA The starvation sensing protein RpsA from E.coli and its homologs are lactonizing enzymes whose putative targets are homoserine lactone (HSL)-derivative. They are part of the mandelate racemase (MR)-like subfamily of the enolase superfamily. Enzymes of this subfamily share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and catalytic residues, a partially conserved Lys-X-Lys motif and a conserved histidine-aspartate dyad.
Probab=70.66 E-value=85 Score=28.63 Aligned_cols=146 Identities=10% Similarity=0.031 Sum_probs=90.9
Q ss_pred CHHHHHHHHHHHHHcCCCeEeCCcCcCCCChhHHHHHHHHhcCCCCCEEEEecccccccCCcccCCCCCHHHHHHHHHHH
Q 022968 40 SHEVGCSIIKETFNRGITLFDTSDVYGVDHDNEIMVGKALKQLPRDKIQLATKFGCFMLDGVSIGVKGSPEYVRKCCEAS 119 (289)
Q Consensus 40 ~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~~g~se~~lg~~l~~~~R~~~~I~tK~~~~~~~~~~~~~~~~~~~i~~~~~~s 119 (289)
+.++..+.+..+.+.|++.|=.- -.+.+ +++++.-.+++.|..-.. ..++.+... +-
T Consensus 126 ~~~~~~~~a~~~~~~Gf~~~KiK--------v~~~v-~avre~~G~~~~l~vDaN----------~~w~~~~A~----~~ 182 (361)
T cd03322 126 DIPELLEAVERHLAQGYRAIRVQ--------LPKLF-EAVREKFGFEFHLLHDVH----------HRLTPNQAA----RF 182 (361)
T ss_pred CHHHHHHHHHHHHHcCCCeEeeC--------HHHHH-HHHHhccCCCceEEEECC----------CCCCHHHHH----HH
Confidence 45666777788888999988421 01222 234432223444433221 124554332 23
Q ss_pred HHHcCCCcccEEeecCCCCCCCHHHHHHHHHHHHHcCccc-eeecCCCCHHHHHHHHccCCceEEeccCCCCCcc-hhhh
Q 022968 120 LKRLDVDYIDLYYQHRVDTSVSIEDTMGELKKLVEEGKIK-YIGLSEASADTIRRAHAVHPITAVQMEYSLWTRE-IEDD 197 (289)
Q Consensus 120 L~~L~~~~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir-~iGvs~~~~~~l~~~~~~~~~~~~q~~~~~~~~~-~~~~ 197 (289)
++.|. .+++.++..|-+. +-++.+.+|++...+. ..|=|-++...+..+++...++++|+.....-.- .-.+
T Consensus 183 ~~~l~--~~~l~~iEeP~~~----~d~~~~~~L~~~~~~pia~gE~~~~~~~~~~~i~~~a~di~~~d~~~~GGit~~~~ 256 (361)
T cd03322 183 GKDVE--PYRLFWMEDPTPA----ENQEAFRLIRQHTATPLAVGEVFNSIWDWQNLIQERLIDYIRTTVSHAGGITPARK 256 (361)
T ss_pred HHHhh--hcCCCEEECCCCc----ccHHHHHHHHhcCCCCEEeccCCcCHHHHHHHHHhCCCCEEecCccccCCHHHHHH
Confidence 33342 2466666665432 2377788888887765 6677788899999999888899999987654321 1268
Q ss_pred hHHHHHHhCCeEEEccc
Q 022968 198 IIPLCRELGIGIVAYSP 214 (289)
Q Consensus 198 ~~~~~~~~gi~v~a~~p 214 (289)
+.+.|+++|+.+...+.
T Consensus 257 ia~~A~~~gi~~~~h~~ 273 (361)
T cd03322 257 IADLASLYGVRTGWHGP 273 (361)
T ss_pred HHHHHHHcCCeeeccCC
Confidence 99999999999986543
No 49
>PRK10550 tRNA-dihydrouridine synthase C; Provisional
Probab=70.43 E-value=81 Score=28.27 Aligned_cols=132 Identities=11% Similarity=-0.008 Sum_probs=81.4
Q ss_pred CHHHHHHHHHHHHHcCCCeEeC---Cc-----CcCCCC----hhHHHHHHHHhcC---CCCCEEEEecccccccCCcccC
Q 022968 40 SHEVGCSIIKETFNRGITLFDT---SD-----VYGVDH----DNEIMVGKALKQL---PRDKIQLATKFGCFMLDGVSIG 104 (289)
Q Consensus 40 ~~~~~~~~l~~A~~~Gi~~~Dt---A~-----~Yg~~g----~se~~lg~~l~~~---~R~~~~I~tK~~~~~~~~~~~~ 104 (289)
+.++..+....+.+.|+..+|- .+ .||. | ..-+.+.+.++.. -.+++-|+.|+.....
T Consensus 73 ~p~~~~~aA~~~~~~g~d~IdiN~GCP~~~v~~~g~-Gs~Ll~~~~~~~eiv~avr~~~~~~~pVsvKiR~g~~------ 145 (312)
T PRK10550 73 YPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGG-GATLLKDPELIYQGAKAMREAVPAHLPVTVKVRLGWD------ 145 (312)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeCCCCchHHhcCCC-chHhhcCHHHHHHHHHHHHHhcCCCcceEEEEECCCC------
Confidence 5677777778888899999982 22 2442 2 2344555555541 1224778888754321
Q ss_pred CCCCHHHHHHHHHHHHHHcCCCcccEEeecCCCCCCCHH--H-HHHHHHHHHHcCccceeecCCC-CHHHHHHHHccCCc
Q 022968 105 VKGSPEYVRKCCEASLKRLDVDYIDLYYQHRVDTSVSIE--D-TMGELKKLVEEGKIKYIGLSEA-SADTIRRAHAVHPI 180 (289)
Q Consensus 105 ~~~~~~~i~~~~~~sL~~L~~~~iDl~~lh~~~~~~~~~--~-~~~~l~~l~~~G~ir~iGvs~~-~~~~l~~~~~~~~~ 180 (289)
+.+.. ..+-+.|+..| +|.+.+|.-....... . -|+...++++.-.|--||..+. +++...++++....
T Consensus 146 ---~~~~~-~~~a~~l~~~G---vd~i~Vh~Rt~~~~y~g~~~~~~~i~~ik~~~~iPVi~nGdI~t~~da~~~l~~~g~ 218 (312)
T PRK10550 146 ---SGERK-FEIADAVQQAG---ATELVVHGRTKEDGYRAEHINWQAIGEIRQRLTIPVIANGEIWDWQSAQQCMAITGC 218 (312)
T ss_pred ---CchHH-HHHHHHHHhcC---CCEEEECCCCCccCCCCCcccHHHHHHHHhhcCCcEEEeCCcCCHHHHHHHHhccCC
Confidence 11222 34555567777 5777788654322111 1 3788888888877888888765 77888888776666
Q ss_pred eEEec
Q 022968 181 TAVQM 185 (289)
Q Consensus 181 ~~~q~ 185 (289)
|.+++
T Consensus 219 DgVmi 223 (312)
T PRK10550 219 DAVMI 223 (312)
T ss_pred CEEEE
Confidence 76665
No 50
>PRK04452 acetyl-CoA decarbonylase/synthase complex subunit delta; Provisional
Probab=70.17 E-value=83 Score=28.33 Aligned_cols=92 Identities=17% Similarity=0.247 Sum_probs=52.2
Q ss_pred HHHcCCCcccEEeecC-CCC-CCCHHHHHHHHHHHHHcCccce-eecCCC---CHHHHHHHHccCC---ceEEeccCCCC
Q 022968 120 LKRLDVDYIDLYYQHR-VDT-SVSIEDTMGELKKLVEEGKIKY-IGLSEA---SADTIRRAHAVHP---ITAVQMEYSLW 190 (289)
Q Consensus 120 L~~L~~~~iDl~~lh~-~~~-~~~~~~~~~~l~~l~~~G~ir~-iGvs~~---~~~~l~~~~~~~~---~~~~q~~~~~~ 190 (289)
-+.+|.|+||+-+.-. |+. +...++..+.++...+.=.+=- |..|.. +++.++++++... +-++-..
T Consensus 85 ~~~~GAd~Idl~~~s~dp~~~d~~~~e~~~~Vk~V~eavd~PL~Id~s~n~~kD~evleaale~~~g~~pLInSat---- 160 (319)
T PRK04452 85 VEEYGADMITLHLISTDPNGKDKSPEEAAKTVEEVLQAVDVPLIIGGSGNPEKDAEVLEKVAEAAEGERCLLGSAE---- 160 (319)
T ss_pred HHHhCCCEEEEECCCCCcccccchHHHHHHHHHHHHHhCCCCEEEecCCCCCCCHHHHHHHHHHhCCCCCEEEECC----
Confidence 3478888888764332 221 2233444444444433322222 555533 6788888776522 3322222
Q ss_pred CcchhhhhHHHHHHhCCeEEEcccCc
Q 022968 191 TREIEDDIIPLCRELGIGIVAYSPLG 216 (289)
Q Consensus 191 ~~~~~~~~~~~~~~~gi~v~a~~pl~ 216 (289)
...-+.+.+.|+++|..|++.+|..
T Consensus 161 -~en~~~i~~lA~~y~~~Vva~s~~D 185 (319)
T PRK04452 161 -EDNYKKIAAAAMAYGHAVIAWSPLD 185 (319)
T ss_pred -HHHHHHHHHHHHHhCCeEEEEcHHH
Confidence 1112689999999999999988654
No 51
>cd02069 methionine_synthase_B12_BD B12 binding domain of methionine synthase. This domain binds methylcobalamin, which it uses as an intermediate methyl carrier from methyltetrahydrofolate (CH3H4folate) to homocysteine (Hcy).
Probab=69.15 E-value=69 Score=26.95 Aligned_cols=145 Identities=11% Similarity=-0.024 Sum_probs=82.9
Q ss_pred CHHHHHHHHHHHHHcCCCeEeCCcCcCCCChhHHHHHHHHhc----CCCCCEEEEecccccccCCcccCCCCCHHHHHHH
Q 022968 40 SHEVGCSIIKETFNRGITLFDTSDVYGVDHDNEIMVGKALKQ----LPRDKIQLATKFGCFMLDGVSIGVKGSPEYVRKC 115 (289)
Q Consensus 40 ~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~~g~se~~lg~~l~~----~~R~~~~I~tK~~~~~~~~~~~~~~~~~~~i~~~ 115 (289)
|.+++.++++.|++.|+.-.|+- +..+-.++.. ..+.+++|.--. ...+.+++.
T Consensus 13 D~~~~~~~l~~al~~~~~~~~ii---------~~~l~p~m~~vG~~w~~gei~vaqe~-------------~as~~~~~~ 70 (213)
T cd02069 13 IRDGIEEDTEEARQQYARPLEII---------NGPLMDGMKVVGDLFGAGKMFLPQVL-------------KSARVMKAA 70 (213)
T ss_pred CHHHHHHHHHHHHHcCCCHHHHH---------HHHHHHHHHHHHHHHccCCCcHHHHH-------------HHHHHHHHH
Confidence 78899999999999997655532 2233333332 134445554221 234445555
Q ss_pred HHHH---HHHcCC--CcccEEeecCCCCCCCHHHHHHHHHHHHHcCc-cceeecCCCCHHHHHHHHccCCceEEeccCCC
Q 022968 116 CEAS---LKRLDV--DYIDLYYQHRVDTSVSIEDTMGELKKLVEEGK-IKYIGLSEASADTIRRAHAVHPITAVQMEYSL 189 (289)
Q Consensus 116 ~~~s---L~~L~~--~~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~-ir~iGvs~~~~~~l~~~~~~~~~~~~q~~~~~ 189 (289)
+... ++.... ..---+++-.+..+...-...=.-.-|+..|. |-++|+.. +++.+.+.+....++++.+....
T Consensus 71 l~~l~~~l~~~~~~~~~~~~vvl~t~~gd~HdiG~~iv~~~l~~~G~~Vi~LG~~v-p~e~~v~~~~~~~~~~V~lS~~~ 149 (213)
T cd02069 71 VAYLEPYMEKEKGENSSKGKIVLATVKGDVHDIGKNLVGVILSNNGYEVIDLGVMV-PIEKILEAAKEHKADIIGLSGLL 149 (213)
T ss_pred HHHHHHHHhhccccCCCCCeEEEEeCCCchhHHHHHHHHHHHHhCCCEEEECCCCC-CHHHHHHHHHHcCCCEEEEccch
Confidence 5555 332221 11123344444443333233333345667887 88889654 56777777677788888887766
Q ss_pred CCcch-hhhhHHHHHHhCC
Q 022968 190 WTREI-EDDIIPLCRELGI 207 (289)
Q Consensus 190 ~~~~~-~~~~~~~~~~~gi 207 (289)
-.... -.++++.+++.+.
T Consensus 150 ~~~~~~~~~~i~~L~~~~~ 168 (213)
T cd02069 150 VPSLDEMVEVAEEMNRRGI 168 (213)
T ss_pred hccHHHHHHHHHHHHhcCC
Confidence 54332 2678888888765
No 52
>PRK01222 N-(5'-phosphoribosyl)anthranilate isomerase; Provisional
Probab=69.10 E-value=15 Score=30.79 Aligned_cols=66 Identities=23% Similarity=0.283 Sum_probs=43.6
Q ss_pred HHcCCCcccEEeecCCCCCCCHHHHHHHHHHHHHcCccceeecC-CCCHHHHHHHHccCCceEEeccCC
Q 022968 121 KRLDVDYIDLYYQHRVDTSVSIEDTMGELKKLVEEGKIKYIGLS-EASADTIRRAHAVHPITAVQMEYS 188 (289)
Q Consensus 121 ~~L~~~~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~iGvs-~~~~~~l~~~~~~~~~~~~q~~~~ 188 (289)
..+|.|++=+.+........+.+ ..+.+.+.. .+.+..+||. |-+++.+.++++...++++|+.-+
T Consensus 20 ~~~Gad~iGfI~~~~S~R~V~~~-~a~~i~~~~-~~~i~~VgVf~~~~~~~i~~~~~~~~~d~vQLHg~ 86 (210)
T PRK01222 20 AELGADAIGFVFYPKSPRYVSPE-QAAELAAAL-PPFVKVVGVFVNASDEEIDEIVETVPLDLLQLHGD 86 (210)
T ss_pred HHcCCCEEEEccCCCCCCcCCHH-HHHHHHHhC-CCCCCEEEEEeCCCHHHHHHHHHhcCCCEEEECCC
Confidence 46999999886333222223333 333333322 3568899996 668899999999899999999643
No 53
>PF05690 ThiG: Thiazole biosynthesis protein ThiG; InterPro: IPR008867 This family consists of several bacterial thiazole biosynthesis protein G sequences. ThiG, together with ThiF and ThiH, is proposed to be involved in the synthesis of 4-methyl-5-(b-hydroxyethyl)thiazole (THZ) which is an intermediate in the thiazole production pathway [].; GO: 0009228 thiamine biosynthetic process; PDB: 1WV2_B 1TYG_C 1XM3_B 2HTM_C 2YZR_C.
Probab=68.89 E-value=31 Score=29.59 Aligned_cols=131 Identities=15% Similarity=0.127 Sum_probs=66.3
Q ss_pred cCccccccccCCCCCCCCCCHHHHHHHHHHHHH-cCCCeEeCCcCcCCC-C-hhHHHHHHHHhcCCCCCEEEEecccccc
Q 022968 21 VSRLGFGCGGLSGIYNKPLSHEVGCSIIKETFN-RGITLFDTSDVYGVD-H-DNEIMVGKALKQLPRDKIQLATKFGCFM 97 (289)
Q Consensus 21 vs~lg~G~~~~~~~~~~~~~~~~~~~~l~~A~~-~Gi~~~DtA~~Yg~~-g-~se~~lg~~l~~~~R~~~~I~tK~~~~~ 97 (289)
=|+|-+||..+.+ .+++..|++ +|-..+=.|----+. + ..+..+ +.-.+++++.+.--.
T Consensus 8 ~SRL~lGTgky~s-----------~~~m~~ai~aSg~evvTvalRR~~~~~~~~~~~~---~~~i~~~~~~lLPNT---- 69 (247)
T PF05690_consen 8 RSRLILGTGKYPS-----------PEVMREAIEASGAEVVTVALRRVNLGSKPGGDNI---LDYIDRSGYTLLPNT---- 69 (247)
T ss_dssp S-SEEEE-STSSS-----------HHHHHHHHHHTT-SEEEEECCGSTTTS-TTCHHC---CCCTTCCTSEEEEE-----
T ss_pred ecceEEecCCCCC-----------HHHHHHHHHHhCCcEEEEEEecccCCCCCCCccH---HHHhcccCCEECCcC----
Confidence 3788888876432 445666664 477666444311110 0 011222 222344555443221
Q ss_pred cCCcccCCCCCHHHHHHHHHHHHHHcCCCcccEEeecCCCCCCC-HHHHHHHHHHHHHcCccceeecCCCCHHHHHHHHc
Q 022968 98 LDGVSIGVKGSPEYVRKCCEASLKRLDVDYIDLYYQHRVDTSVS-IEDTMGELKKLVEEGKIKYIGLSEASADTIRRAHA 176 (289)
Q Consensus 98 ~~~~~~~~~~~~~~i~~~~~~sL~~L~~~~iDl~~lh~~~~~~~-~~~~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~~~ 176 (289)
....+.+...+..+-..+-+++++|=+=.+..+....+ ..+++++-+.|+++|-+-. =.++-++-..+++.+
T Consensus 70 ------aGc~tA~EAv~~A~laRe~~~t~wIKLEVi~D~~~L~PD~~etl~Aae~Lv~eGF~Vl-PY~~~D~v~akrL~d 142 (247)
T PF05690_consen 70 ------AGCRTAEEAVRTARLAREAFGTNWIKLEVIGDDKTLLPDPIETLKAAEILVKEGFVVL-PYCTDDPVLAKRLED 142 (247)
T ss_dssp ------TT-SSHHHHHHHHHHHHHTTS-SEEEE--BS-TTT--B-HHHHHHHHHHHHHTT-EEE-EEE-S-HHHHHHHHH
T ss_pred ------CCCCCHHHHHHHHHHHHHHcCCCeEEEEEeCCCCCcCCChhHHHHHHHHHHHCCCEEe-ecCCCCHHHHHHHHH
Confidence 11356777777788888889999888776665544333 4589999999999997542 223444444444444
No 54
>COG2355 Zn-dependent dipeptidase, microsomal dipeptidase homolog [Amino acid transport and metabolism]
Probab=66.68 E-value=51 Score=29.57 Aligned_cols=106 Identities=17% Similarity=0.214 Sum_probs=70.9
Q ss_pred HHHHHHHHHHHcCCCeEeCCcCcCCCChhHHHHHHHHhcCCCCCEEEEecccccccCCcccCCCCCHHHHHHHHHHHHHH
Q 022968 43 VGCSIIKETFNRGITLFDTSDVYGVDHDNEIMVGKALKQLPRDKIQLATKFGCFMLDGVSIGVKGSPEYVRKCCEASLKR 122 (289)
Q Consensus 43 ~~~~~l~~A~~~Gi~~~DtA~~Yg~~g~se~~lg~~l~~~~R~~~~I~tK~~~~~~~~~~~~~~~~~~~i~~~~~~sL~~ 122 (289)
..+++|+.+.+.|| .+|.|.. +++.+=.++.- .+..+|+|......-. +..+.--.++++...++
T Consensus 150 ~Gk~lV~~~N~LgI-iiDlSH~------s~kt~~Dvl~~--s~~PviaSHSN~~al~------~h~RNl~D~qlkaI~~~ 214 (313)
T COG2355 150 FGKELVREMNELGI-IIDLSHL------SDKTFWDVLDL--SKAPVVASHSNARALV------DHPRNLSDEQLKAIAET 214 (313)
T ss_pred HHHHHHHHHHhcCC-EEEeccc------CCccHHHHHhc--cCCceEEecCCchhcc------CCCCCCCHHHHHHHHhc
Confidence 46999999999999 9999954 56777777762 4556777765543321 12222224555666666
Q ss_pred cCCCcccEEeecCC-----CCCCCHHHHHHHHHHHHHcCccceeecCC
Q 022968 123 LDVDYIDLYYQHRV-----DTSVSIEDTMGELKKLVEEGKIKYIGLSE 165 (289)
Q Consensus 123 L~~~~iDl~~lh~~-----~~~~~~~~~~~~l~~l~~~G~ir~iGvs~ 165 (289)
=|+ |.+-++-.. .+..++++..+.++.+++.+=++++|+.+
T Consensus 215 gGv--Igv~~~~~fl~~~~~~~atldd~v~hI~h~v~~~G~dhVglGs 260 (313)
T COG2355 215 GGV--IGVNFIPAFLRPGGAARATLDDLVRHIDHFVELVGIDHVGLGS 260 (313)
T ss_pred CCE--EEEEeehhhccCCCCCCCCHHHHHHHHHHHHHhcCcceeEecc
Confidence 554 444333211 23457899999999999999999999964
No 55
>PRK09058 coproporphyrinogen III oxidase; Provisional
Probab=66.50 E-value=24 Score=33.34 Aligned_cols=28 Identities=25% Similarity=0.294 Sum_probs=22.0
Q ss_pred CCHHHHHHHHHHHHHHcCCCcccEEeecC
Q 022968 107 GSPEYVRKCCEASLKRLDVDYIDLYYQHR 135 (289)
Q Consensus 107 ~~~~~i~~~~~~sL~~L~~~~iDl~~lh~ 135 (289)
-+.+.+++.++..++ |+.+++++|.|.-
T Consensus 227 qT~e~~~~~l~~~~~-l~~~~is~y~L~~ 254 (449)
T PRK09058 227 QTPEIWQQDLAIVRD-LGLDGVDLYALNL 254 (449)
T ss_pred CCHHHHHHHHHHHHh-cCCCEEEEecccc
Confidence 477888888866654 9999999998864
No 56
>cd03314 MAL Methylaspartate ammonia lyase (3-methylaspartase, MAL) is a homodimeric enzyme, catalyzing the magnesium-dependent reversible alpha,beta-elimination of ammonia from L-threo-(2S,3S)-3-methylaspartic acid to mesaconic acid. This reaction is part of the main catabolic pathway for glutamate. MAL belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=66.41 E-value=1e+02 Score=28.35 Aligned_cols=85 Identities=16% Similarity=0.066 Sum_probs=58.6
Q ss_pred EEeecCCCCCCCHHHHHHHHHHHHHc------CccceeecCCCCHHHHHHHHccCCceEEeccCCCCCcc-hhhhhHHHH
Q 022968 130 LYYQHRVDTSVSIEDTMGELKKLVEE------GKIKYIGLSEASADTIRRAHAVHPITAVQMEYSLWTRE-IEDDIIPLC 202 (289)
Q Consensus 130 l~~lh~~~~~~~~~~~~~~l~~l~~~------G~ir~iGvs~~~~~~l~~~~~~~~~~~~q~~~~~~~~~-~~~~~~~~~ 202 (289)
++++..|-+..+..+.++.+.+|.+. +.=-..|=|.++.+.+.++++....+++|+..+-.-.- ...++.++|
T Consensus 229 ~~~iEqP~~~~d~~~~~~~~a~Lr~~~~~~~~~iPIa~dEs~~t~~d~~~li~~~a~div~~kl~k~GGIt~a~kia~lA 308 (369)
T cd03314 229 PLRIEGPMDAGSREAQIERMAALRAELDRRGVGVRIVADEWCNTLEDIRDFADAGAAHMVQIKTPDLGGIDNTIDAVLYC 308 (369)
T ss_pred cEEEecCCCCCcchhhHHHHHHHHHHhhcCCCCceEEecCCcCCHHHHHHHHHhCCCCEEEecchhcCCHHHHHHHHHHH
Confidence 34566654432222346777777766 33334466778899999999888889999987764321 126789999
Q ss_pred HHhCCeEEEccc
Q 022968 203 RELGIGIVAYSP 214 (289)
Q Consensus 203 ~~~gi~v~a~~p 214 (289)
+.+|+.++..+.
T Consensus 309 ~a~Gi~~~~h~~ 320 (369)
T cd03314 309 KEHGVGAYLGGS 320 (369)
T ss_pred HHcCCcEEEeCC
Confidence 999999997543
No 57
>cd00740 MeTr MeTr subgroup of pterin binding enzymes. This family includes cobalamin-dependent methyltransferases such as methyltetrahydrofolate, corrinoid iron-sulfur protein methyltransferase (MeTr) and methionine synthase (MetH). Cobalamin-dependent methyltransferases catalyze the transfer of a methyl group via a methyl- cob(III)amide intermediate. These include MeTr, a functional heterodimer, and the folate binding domain of MetH.
Probab=65.77 E-value=89 Score=27.03 Aligned_cols=107 Identities=14% Similarity=0.038 Sum_probs=62.9
Q ss_pred CCHHHHHHHHHHHHHHcCCCcccEEeecCCCCCCCHH-HHHHHHHHHHHcCccceeecCCCCHHHHHHHHccCCceEEec
Q 022968 107 GSPEYVRKCCEASLKRLDVDYIDLYYQHRVDTSVSIE-DTMGELKKLVEEGKIKYIGLSEASADTIRRAHAVHPITAVQM 185 (289)
Q Consensus 107 ~~~~~i~~~~~~sL~~L~~~~iDl~~lh~~~~~~~~~-~~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~~~~~~~~~~q~ 185 (289)
.+++.+.+..++-++ -|-|+||+-. .|. ..+.+ +.-+.+..+.+.-. .-|.|-+++++.++++++...-..+-+
T Consensus 23 ~~~d~~~~~A~~~~~-~GAdiIDIG~--~~~-~~~~~ee~~r~v~~i~~~~~-~piSIDT~~~~v~e~aL~~~~G~~iIN 97 (252)
T cd00740 23 EDYDEALDVARQQVE-GGAQILDLNV--DYG-GLDGVSAMKWLLNLLATEPT-VPLMLDSTNWEVIEAGLKCCQGKCVVN 97 (252)
T ss_pred CCHHHHHHHHHHHHH-CCCCEEEECC--CCC-CCCHHHHHHHHHHHHHHhcC-CcEEeeCCcHHHHHHHHhhCCCCcEEE
Confidence 466777777777665 5999999864 233 22223 33333333332212 237778999999999988621122333
Q ss_pred cCCCCCc-chhhhhHHHHHHhCCeEEEcccCccc
Q 022968 186 EYSLWTR-EIEDDIIPLCRELGIGIVAYSPLGRG 218 (289)
Q Consensus 186 ~~~~~~~-~~~~~~~~~~~~~gi~v~a~~pl~~G 218 (289)
..+.... ....++++.++++|..++.+..-..|
T Consensus 98 sIs~~~~~e~~~~~~~~~~~~~~~vV~m~~~~~g 131 (252)
T cd00740 98 SINLEDGEERFLKVARLAKEHGAAVVVLAFDEQG 131 (252)
T ss_pred eCCCCCCccccHHHHHHHHHhCCCEEEeccCCCC
Confidence 3343321 11257889999999999887544333
No 58
>PRK05628 coproporphyrinogen III oxidase; Validated
Probab=64.99 E-value=39 Score=31.01 Aligned_cols=60 Identities=18% Similarity=0.165 Sum_probs=35.4
Q ss_pred CCCHHHHHHHHHHHHHHcCCCcccEEeecCCCCCC--------------C---HHHHHHH-HHHHHHcCccceeecCCCC
Q 022968 106 KGSPEYVRKCCEASLKRLDVDYIDLYYQHRVDTSV--------------S---IEDTMGE-LKKLVEEGKIKYIGLSEAS 167 (289)
Q Consensus 106 ~~~~~~i~~~~~~sL~~L~~~~iDl~~lh~~~~~~--------------~---~~~~~~~-l~~l~~~G~ir~iGvs~~~ 167 (289)
.-+.+.+++.++..+ .++.+++.+|.+.-. +.. + ..+.++. .+.|.+.|. ..+++|||.
T Consensus 171 gqt~~~~~~tl~~~~-~l~~~~i~~y~l~~~-~gT~l~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~G~-~~ye~s~fa 247 (375)
T PRK05628 171 GESDDDWRASLDAAL-EAGVDHVSAYALIVE-DGTALARRVRRGELPAPDDDVLADRYELADARLSAAGF-DWYEVSNWA 247 (375)
T ss_pred CCCHHHHHHHHHHHH-hcCCCEEEeeeeecC-CCChHHHHhhcCCCCCCChHHHHHHHHHHHHHHHHcCC-Ceeeecccc
Confidence 346777777776554 488899888877632 111 1 1122333 344566666 457888886
Q ss_pred H
Q 022968 168 A 168 (289)
Q Consensus 168 ~ 168 (289)
.
T Consensus 248 ~ 248 (375)
T PRK05628 248 R 248 (375)
T ss_pred C
Confidence 3
No 59
>PRK05660 HemN family oxidoreductase; Provisional
Probab=64.64 E-value=45 Score=30.69 Aligned_cols=60 Identities=13% Similarity=0.048 Sum_probs=35.8
Q ss_pred CCHHHHHHHHHHHHHHcCCCcccEEeec-CCCCC-------CC-HHHHHH----HHHHHHHcCccceeecCCCCH
Q 022968 107 GSPEYVRKCCEASLKRLDVDYIDLYYQH-RVDTS-------VS-IEDTMG----ELKKLVEEGKIKYIGLSEASA 168 (289)
Q Consensus 107 ~~~~~i~~~~~~sL~~L~~~~iDl~~lh-~~~~~-------~~-~~~~~~----~l~~l~~~G~ir~iGvs~~~~ 168 (289)
.+.+.+.+.++..++ ++++++.+|.+- .|... .+ .++.|+ +.+.|.+.|. ..+++|||..
T Consensus 171 qt~~~~~~~l~~~~~-l~p~~is~y~l~~~~gT~l~~~~~~~~~~~~~~~~~~~~~~~L~~~Gy-~~yei~~fa~ 243 (378)
T PRK05660 171 QSLEEALDDLRQAIA-LNPPHLSWYQLTIEPNTLFGSRPPVLPDDDALWDIFEQGHQLLTAAGY-QQYETSAYAK 243 (378)
T ss_pred CCHHHHHHHHHHHHh-cCCCeEEeeccEeccCCcccccCCCCcCHHHHHHHHHHHHHHHHHcCC-cEeecccccC
Confidence 467777777766554 888888888774 22210 11 122232 3446677776 4478888864
No 60
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members. are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....
Probab=64.49 E-value=85 Score=26.48 Aligned_cols=161 Identities=19% Similarity=0.226 Sum_probs=80.9
Q ss_pred CCHHHHHHHHHHHHHcCCCeEeCC-cCcCCCChhHHHHHHHHhcCCCCCEEEEecccccccCCcccCCCCCHHHHHHHHH
Q 022968 39 LSHEVGCSIIKETFNRGITLFDTS-DVYGVDHDNEIMVGKALKQLPRDKIQLATKFGCFMLDGVSIGVKGSPEYVRKCCE 117 (289)
Q Consensus 39 ~~~~~~~~~l~~A~~~Gi~~~DtA-~~Yg~~g~se~~lg~~l~~~~R~~~~I~tK~~~~~~~~~~~~~~~~~~~i~~~~~ 117 (289)
.+.++..++++.-.+.||..+++. +..+ ....+.+.+..+..+...+...+. ...+.++..++
T Consensus 11 ~~~~~k~~i~~~L~~~Gv~~iEvg~~~~~--~~~~~~v~~~~~~~~~~~~~~~~~--------------~~~~~i~~~~~ 74 (237)
T PF00682_consen 11 FSTEEKLEIAKALDEAGVDYIEVGFPFAS--EDDFEQVRRLREALPNARLQALCR--------------ANEEDIERAVE 74 (237)
T ss_dssp --HHHHHHHHHHHHHHTTSEEEEEHCTSS--HHHHHHHHHHHHHHHSSEEEEEEE--------------SCHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHhCCCEEEEcccccC--HHHHHHhhhhhhhhcccccceeee--------------ehHHHHHHHHH
Confidence 477889999999999999999999 3333 123344444444322322222222 23455555554
Q ss_pred HHHHHcCCCcccEEeecCCC-----CCCC----HHHHHHHHHHHHHcCccceeecCC---CCHHHHHHHHcc---CCceE
Q 022968 118 ASLKRLDVDYIDLYYQHRVD-----TSVS----IEDTMGELKKLVEEGKIKYIGLSE---ASADTIRRAHAV---HPITA 182 (289)
Q Consensus 118 ~sL~~L~~~~iDl~~lh~~~-----~~~~----~~~~~~~l~~l~~~G~ir~iGvs~---~~~~~l~~~~~~---~~~~~ 182 (289)
.. ...|.+.+.++.--++. .... ++.+.+..+..++.|....+++-. ++++.+.++.+. ..++.
T Consensus 75 ~~-~~~g~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~v~~ak~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 153 (237)
T PF00682_consen 75 AA-KEAGIDIIRIFISVSDLHIRKNLNKSREEALERIEEAVKYAKELGYEVAFGCEDASRTDPEELLELAEALAEAGADI 153 (237)
T ss_dssp HH-HHTTSSEEEEEEETSHHHHHHHTCSHHHHHHHHHHHHHHHHHHTTSEEEEEETTTGGSSHHHHHHHHHHHHHHT-SE
T ss_pred hh-HhccCCEEEecCcccHHHHHHhhcCCHHHHHHHHHHHHHHHHhcCCceEeCccccccccHHHHHHHHHHHHHcCCeE
Confidence 33 45777766655322210 0111 334556667777888877777743 445554444332 23344
Q ss_pred Eec--cCCCCCcchhhhhHHHHHHh----CCeEEEcccCc
Q 022968 183 VQM--EYSLWTREIEDDIIPLCREL----GIGIVAYSPLG 216 (289)
Q Consensus 183 ~q~--~~~~~~~~~~~~~~~~~~~~----gi~v~a~~pl~ 216 (289)
+.+ .+....+..-.+++...+++ .+++.+..-++
T Consensus 154 i~l~Dt~G~~~P~~v~~lv~~~~~~~~~~~l~~H~Hnd~G 193 (237)
T PF00682_consen 154 IYLADTVGIMTPEDVAELVRALREALPDIPLGFHAHNDLG 193 (237)
T ss_dssp EEEEETTS-S-HHHHHHHHHHHHHHSTTSEEEEEEBBTTS
T ss_pred EEeeCccCCcCHHHHHHHHHHHHHhccCCeEEEEecCCcc
Confidence 433 23333333224555555543 24444444443
No 61
>COG3172 NadR Predicted ATPase/kinase involved in NAD metabolism [Coenzyme metabolism]
Probab=64.44 E-value=43 Score=27.12 Aligned_cols=98 Identities=11% Similarity=0.082 Sum_probs=63.1
Q ss_pred HcCCCeEeCCc--------CcCCCChhHHHHHHHHhcCCCCCEEEEecccccccCCccc--CCCCCHHHHHHHHHHHHHH
Q 022968 53 NRGITLFDTSD--------VYGVDHDNEIMVGKALKQLPRDKIQLATKFGCFMLDGVSI--GVKGSPEYVRKCCEASLKR 122 (289)
Q Consensus 53 ~~Gi~~~DtA~--------~Yg~~g~se~~lg~~l~~~~R~~~~I~tK~~~~~~~~~~~--~~~~~~~~i~~~~~~sL~~ 122 (289)
..+|-++||-. .|- |..+..+-..|.+ .|-|+.|.++--..+.+++.. ....++..+.+-+++.|++
T Consensus 78 a~~v~fiDTD~itT~~~~~~y~--gr~~P~~~~~i~~-~r~DL~lLl~p~t~wvaDG~R~~~~~~~R~~F~~~l~~~L~~ 154 (187)
T COG3172 78 ANKVAFIDTDFLTTQAFCKKYE--GREHPFLQALIAE-YRFDLTLLLEPNTPWVADGLRSLGSSVQRQEFQNLLEQMLEE 154 (187)
T ss_pred CCceEEEeccHHHHHHHHHHHc--ccCCchHHHHHhh-cccceEEEcCCCCceeCCCccccccHhHHHHHHHHHHHHHHH
Confidence 44999999864 343 4455666677775 677888887754333333221 1223677888889999998
Q ss_pred cCCCcccEEeecCCCCCCCHHHHHHHHHHHHHcC
Q 022968 123 LDVDYIDLYYQHRVDTSVSIEDTMGELKKLVEEG 156 (289)
Q Consensus 123 L~~~~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G 156 (289)
-+..|+- |..++-......+.++.++|..++
T Consensus 155 ~~~~~v~---i~~~~y~eR~~~~~~aV~ell~~~ 185 (187)
T COG3172 155 NNIPFVV---IEGEDYLERYLQAVEAVEELLGEK 185 (187)
T ss_pred hCCcEEE---EcCCCHHHHHHHHHHHHHHHHhcc
Confidence 8776643 454443344456788888888776
No 62
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=64.06 E-value=75 Score=27.36 Aligned_cols=51 Identities=14% Similarity=0.148 Sum_probs=35.4
Q ss_pred hhhHHHHHHhCCeEEEcccCccccCCCCCCCCCCCcchhhhcCCCCCccchHHHHHHHHHHHHHHHHhCC
Q 022968 196 DDIIPLCRELGIGIVAYSPLGRGFFAGKAVVESLPSESILAMHPRFSGENLEKNKLLYTRLETLAAKYGC 265 (289)
Q Consensus 196 ~~~~~~~~~~gi~v~a~~pl~~G~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ia~~~g~ 265 (289)
...+++|+..|...+...|...|... .....+++..+.++.+.++|+++|+
T Consensus 93 ~~~i~~a~~lGa~~i~~~~~~~~~~~-------------------~~~~~~~~~~~~l~~l~~~a~~~gv 143 (275)
T PRK09856 93 KLAMDMAKEMNAGYTLISAAHAGYLT-------------------PPNVIWGRLAENLSELCEYAENIGM 143 (275)
T ss_pred HHHHHHHHHhCCCEEEEcCCCCCCCC-------------------CHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 46789999999999877665433210 0112356677788889999999987
No 63
>COG2089 SpsE Sialic acid synthase [Cell envelope biogenesis, outer membrane]
Probab=64.02 E-value=1.1e+02 Score=27.57 Aligned_cols=116 Identities=17% Similarity=0.167 Sum_probs=72.0
Q ss_pred CCHHHHHHHHHHHHHcCCCeEeCCcCcCC---------C------C--hhHHHHHHHHhcCCCCCEEEEecccccccCCc
Q 022968 39 LSHEVGCSIIKETFNRGITLFDTSDVYGV---------D------H--DNEIMVGKALKQLPRDKIQLATKFGCFMLDGV 101 (289)
Q Consensus 39 ~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~---------~------g--~se~~lg~~l~~~~R~~~~I~tK~~~~~~~~~ 101 (289)
++.+...++.+.|-+.|+-+|-|--++.. + | ....+|....+ ..+.+.++|-.
T Consensus 87 ~p~e~~~~Lke~a~~~Gi~~~SSPfd~~svd~l~~~~~~ayKIaS~E~~~~plik~iA~--~~kPiIlSTGm-------- 156 (347)
T COG2089 87 TPLEWHAQLKEYARKRGIIFFSSPFDLTAVDLLESLNPPAYKIASGEINDLPLIKYIAK--KGKPIILSTGM-------- 156 (347)
T ss_pred CCHHHHHHHHHHHHHcCeEEEecCCCHHHHHHHHhcCCCeEEecCccccChHHHHHHHh--cCCCEEEEccc--------
Confidence 56777899999999999988866554432 0 0 01223333332 23356666643
Q ss_pred ccCCCCCHHHHHHHHHHHHHHcCCCcccEEeecCCCCC-CCHHH-HHHHHHHHHHcCccceeecCCCCHHHHHH
Q 022968 102 SIGVKGSPEYVRKCCEASLKRLDVDYIDLYYQHRVDTS-VSIED-TMGELKKLVEEGKIKYIGLSEASADTIRR 173 (289)
Q Consensus 102 ~~~~~~~~~~i~~~~~~sL~~L~~~~iDl~~lh~~~~~-~~~~~-~~~~l~~l~~~G~ir~iGvs~~~~~~l~~ 173 (289)
.+.+.+.++++...+ -|. .|+.+||+.... .+.++ -+.+|..|++.= ---+|+|+|+..-+.-
T Consensus 157 -----a~~~ei~~av~~~r~-~g~--~~i~LLhC~s~YPap~ed~NL~~i~~l~~~F-n~~vGlSDHT~g~~a~ 221 (347)
T COG2089 157 -----ATIEEIEEAVAILRE-NGN--PDIALLHCTSAYPAPFEDVNLKAIPKLAEAF-NAIVGLSDHTLGILAP 221 (347)
T ss_pred -----ccHHHHHHHHHHHHh-cCC--CCeEEEEecCCCCCCHHHhhHHHHHHHHHHh-CCccccccCccchhHH
Confidence 356677888755444 443 399999997532 44444 366666666663 5669999998764433
No 64
>PRK08599 coproporphyrinogen III oxidase; Provisional
Probab=63.61 E-value=36 Score=31.18 Aligned_cols=60 Identities=12% Similarity=0.090 Sum_probs=36.6
Q ss_pred CCHHHHHHHHHHHHHHcCCCcccEEeec-CCCCC-----------CC-HH---HH-HHHHHHHHHcCccceeecCCCCH
Q 022968 107 GSPEYVRKCCEASLKRLDVDYIDLYYQH-RVDTS-----------VS-IE---DT-MGELKKLVEEGKIKYIGLSEASA 168 (289)
Q Consensus 107 ~~~~~i~~~~~~sL~~L~~~~iDl~~lh-~~~~~-----------~~-~~---~~-~~~l~~l~~~G~ir~iGvs~~~~ 168 (289)
-+.+.+++.++.. .+|+++++.++.+. .|... .+ .+ +. -.+.+.|.+.|. ..+++|+|..
T Consensus 164 qt~~~~~~~l~~~-~~l~~~~i~~y~l~~~pgT~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~Gy-~~~~~~~fa~ 240 (377)
T PRK08599 164 QTIEDFKESLAKA-LALDIPHYSAYSLILEPKTVFYNLMRKGKLRLPGEDLEAEMYEYLMDEMEAHGF-HQYEISNFAK 240 (377)
T ss_pred CCHHHHHHHHHHH-HccCCCEEeeeceeecCCChhHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHcCC-cEeeeeeeeC
Confidence 4677777777654 55888888887653 22110 01 11 12 246677777886 4688988863
No 65
>PRK13347 coproporphyrinogen III oxidase; Provisional
Probab=63.52 E-value=31 Score=32.60 Aligned_cols=60 Identities=20% Similarity=0.290 Sum_probs=38.7
Q ss_pred CCHHHHHHHHHHHHHHcCCCcccEEee-cCCCC----------CC-CHHHH----HHHHHHHHHcCccceeecCCCCH
Q 022968 107 GSPEYVRKCCEASLKRLDVDYIDLYYQ-HRVDT----------SV-SIEDT----MGELKKLVEEGKIKYIGLSEASA 168 (289)
Q Consensus 107 ~~~~~i~~~~~~sL~~L~~~~iDl~~l-h~~~~----------~~-~~~~~----~~~l~~l~~~G~ir~iGvs~~~~ 168 (289)
-+.+.+.+.++..+ +|+.+++.+|.+ |.|.. .. +.++. ..+.+.|.+.|.. .+|+++|..
T Consensus 216 qt~e~~~~tl~~~~-~l~p~~i~~y~l~~~p~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~L~~~Gy~-~~~~~~far 291 (453)
T PRK13347 216 QTVESFRETLDKVI-ALSPDRIAVFGYAHVPSRRKNQRLIDEAALPDAEERLRQARAVADRLLAAGYV-PIGLDHFAL 291 (453)
T ss_pred CCHHHHHHHHHHHH-hcCCCEEEEeccccccchhhHHhcCCccCCcCHHHHHHHHHHHHHHHHHCCCE-EEeccceeC
Confidence 46777887776665 588898888866 33320 01 11222 2456778888974 489999964
No 66
>cd01974 Nitrogenase_MoFe_beta Nitrogenase_MoFe_beta: Nitrogenase MoFe protein, beta subunit. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Molybdenum (Mo-) nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. This group contains the beta subunit of the MoFe protein. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=63.31 E-value=1.3e+02 Score=28.17 Aligned_cols=108 Identities=16% Similarity=0.190 Sum_probs=51.9
Q ss_pred CcCcCCCChhHHHHHHHHhc----CCCCCEEEEecccccccCCcccCCCCCHHHHHHHHHHHHHHcCC-CcccEEeecCC
Q 022968 62 SDVYGVDHDNEIMVGKALKQ----LPRDKIQLATKFGCFMLDGVSIGVKGSPEYVRKCCEASLKRLDV-DYIDLYYQHRV 136 (289)
Q Consensus 62 A~~Yg~~g~se~~lg~~l~~----~~R~~~~I~tK~~~~~~~~~~~~~~~~~~~i~~~~~~sL~~L~~-~~iDl~~lh~~ 136 (289)
.-.|| .|+.|-++|++ .+.+=++|.|-+-...- .-+.+.+-+.++ ++... ..+.++.++.|
T Consensus 64 d~V~G----g~~~L~~ai~~~~~~~~p~~I~v~ttC~~~ii-------GdDi~~v~~~~~---~~~~~~~~~~vi~v~tp 129 (435)
T cd01974 64 AAVFG----GQNNLIDGLKNAYAVYKPDMIAVSTTCMAEVI-------GDDLNAFIKNAK---NKGSIPADFPVPFANTP 129 (435)
T ss_pred ceEEC----cHHHHHHHHHHHHHhcCCCEEEEeCCchHhhh-------hccHHHHHHHHH---HhccCCCCCeEEEecCC
Confidence 34666 46677777776 34454677776432211 012222222222 22211 14788888887
Q ss_pred CCCCCH----HHHHHHHHH-HHH-------cCccceee-cCC-CC-HHHHHHHHccCCceEE
Q 022968 137 DTSVSI----EDTMGELKK-LVE-------EGKIKYIG-LSE-AS-ADTIRRAHAVHPITAV 183 (289)
Q Consensus 137 ~~~~~~----~~~~~~l~~-l~~-------~G~ir~iG-vs~-~~-~~~l~~~~~~~~~~~~ 183 (289)
...... +.++++|-+ +.. .+.|.-|| ..+ .+ .+.++++++...+.++
T Consensus 130 gf~gs~~~G~~~a~~al~~~l~~~~~~~~~~~~VNli~~~~~~~d~~~el~~lL~~~Gl~~~ 191 (435)
T cd01974 130 SFVGSHITGYDNMVKGILTHLTEGSGGAGKNGKLNIIPGFDTYAGNMREIKRLLELMGVDYT 191 (435)
T ss_pred CCccCHHHHHHHHHHHHHHHHhcccCCCCCCCeEEEECCCCCCcchHHHHHHHHHHcCCCEE
Confidence 544332 223444432 222 33455565 222 22 5677777776544444
No 67
>cd06543 GH18_PF-ChiA-like PF-ChiA is an uncharacterized chitinase found in the hyperthermophilic archaeon Pyrococcus furiosus with a glycosyl hydrolase family 18 (GH18) catalytic domain as well as a cellulose-binding domain. Members of this domain family are found not only in archaea but also in eukaryotes and prokaryotes. PF-ChiA exhibits hydrolytic activity toward both colloidal and crystalline (beta/alpha) chitins at high temperature.
Probab=62.78 E-value=1.1e+02 Score=27.12 Aligned_cols=189 Identities=15% Similarity=0.129 Sum_probs=95.8
Q ss_pred CCcccCccccccccCCCCCCCCCCHHHHHHHHHHHHH-cCCCeEeCCcCcCCC--ChhHHHHHHHHhcC--CCCCEEEEe
Q 022968 17 QGLEVSRLGFGCGGLSGIYNKPLSHEVGCSIIKETFN-RGITLFDTSDVYGVD--HDNEIMVGKALKQL--PRDKIQLAT 91 (289)
Q Consensus 17 ~g~~vs~lg~G~~~~~~~~~~~~~~~~~~~~l~~A~~-~Gi~~~DtA~~Yg~~--g~se~~lg~~l~~~--~R~~~~I~t 91 (289)
.|.+| .|.||.+.-........+.++..+.+...++ .|++.+|----|+.. ..+-..+-++|+.. .+.++.|+.
T Consensus 66 ~G~kV-iiS~GG~~g~~~~~~~~~~~~~~~a~~~~i~~y~~dgiDfDiE~~~~~d~~~~~~~~~al~~Lq~~~p~l~vs~ 144 (294)
T cd06543 66 AGGDV-IVSFGGASGTPLATSCTSADQLAAAYQKVIDAYGLTHLDFDIEGGALTDTAAIDRRAQALALLQKEYPDLKISF 144 (294)
T ss_pred cCCeE-EEEecCCCCCccccCcccHHHHHHHHHHHHHHhCCCeEEEeccCCccccchhHHHHHHHHHHHHHHCCCcEEEE
Confidence 44555 5688877633211122245555555555554 499999876555520 11235566666652 233566655
Q ss_pred cccccccCCcccCCCCCHHHHHHHHHHHHHHcCC--CcccEEeecCCCC--CCC-HHHHHHHHHHHHHcCccceeecCCC
Q 022968 92 KFGCFMLDGVSIGVKGSPEYVRKCCEASLKRLDV--DYIDLYYQHRVDT--SVS-IEDTMGELKKLVEEGKIKYIGLSEA 166 (289)
Q Consensus 92 K~~~~~~~~~~~~~~~~~~~i~~~~~~sL~~L~~--~~iDl~~lh~~~~--~~~-~~~~~~~l~~l~~~G~ir~iGvs~~ 166 (289)
-+...+. ..+...+ .+-++.+.-|+ ++|.++-+..-.. ... -+.+..+.+.++.+=+--+=+ +
T Consensus 145 Tlp~~p~-------gl~~~g~--~~l~~a~~~Gv~~d~VNiMtmDyg~~~~~~~mg~~a~~aa~~~~~ql~~~~~~---~ 212 (294)
T cd06543 145 TLPVLPT-------GLTPDGL--NVLEAAAANGVDLDTVNIMTMDYGSSAGSQDMGAAAISAAESLHDQLKDLYPK---L 212 (294)
T ss_pred ecCCCCC-------CCChhHH--HHHHHHHHcCCCcceeeeeeecCCCCCCcccHHHHHHHHHHHHHHHHHHHccC---C
Confidence 5432221 1232222 23344445554 5666655543332 122 245566666666552222222 3
Q ss_pred CHHHHHHHHccCCceEEeccCC--CCCcchhhhhHHHHHHhCCeEEEcccCcccc
Q 022968 167 SADTIRRAHAVHPITAVQMEYS--LWTREIEDDIIPLCRELGIGIVAYSPLGRGF 219 (289)
Q Consensus 167 ~~~~l~~~~~~~~~~~~q~~~~--~~~~~~~~~~~~~~~~~gi~v~a~~pl~~G~ 219 (289)
+..++-..+...|. +=+.... ++.......+.+|++++||+.+.+..+.+..
T Consensus 213 s~~~~~~~ig~TpM-iG~nD~~~e~ft~~da~~~~~fA~~~~l~~~s~Ws~~RD~ 266 (294)
T cd06543 213 SDAELWAMIGVTPM-IGVNDVGSEVFTLADAQTLVDFAKEKGLGRLSMWSLNRDR 266 (294)
T ss_pred CHHHHHHHcccccc-ccccCCCCceeeHHHHHHHHHHHHhCCCCeEeeeeccCCC
Confidence 44444444444331 1122211 2233333789999999999999999887643
No 68
>TIGR00048 radical SAM enzyme, Cfr family. A Staphylococcus sciuri plasmid-borne member of this family, Cfr, has been identified as essential to transferrable resistance to chloramphenicol and florfenicol by an unknown mechanism. A 14-15 residue cluster with four perfectly conserved Cys residues suggests this protein may be an enzyme with an iron-sulfur cluster. The Cys cluster is part of the radical SAM domain, suggested to provide a general mechanism by which the Fe-S center cleaves S-adenosylmethionine to initiate radical-based catalysis. Members of this family lack apparent transmembrane domains.
Probab=62.68 E-value=29 Score=31.78 Aligned_cols=89 Identities=10% Similarity=0.211 Sum_probs=55.8
Q ss_pred EeecCCCCC-----------CCHHHHHHHHHHHHH-cCc---cceeecC--CCCHHH---HHHHHccCCceEEeccCCCC
Q 022968 131 YYQHRVDTS-----------VSIEDTMGELKKLVE-EGK---IKYIGLS--EASADT---IRRAHAVHPITAVQMEYSLW 190 (289)
Q Consensus 131 ~~lh~~~~~-----------~~~~~~~~~l~~l~~-~G~---ir~iGvs--~~~~~~---l~~~~~~~~~~~~q~~~~~~ 190 (289)
+-||.+++. .+++++++++.++.+ .|+ |+++=+. |.+.++ |.+++...++.++-++||+.
T Consensus 219 iSL~a~~~e~r~~l~p~~~~~~l~~ll~~l~~~~~~~g~~VtieyvLI~GvNDs~e~a~~La~llk~l~~~VnLIPynp~ 298 (355)
T TIGR00048 219 ISLHAPNDELRSSLMPINKKYNIETLLAAVRRYLNKTGRRVTFEYVLLDGVNDQVEHAEELAELLKGTKCKVNLIPWNPF 298 (355)
T ss_pred EEeCCCCHHHHHHhcCcccCCCHHHHHHHHHHHHHHhCCEEEEEEEEECCCCCCHHHHHHHHHHHhcCCCceEEEecccC
Confidence 668988642 236778888876544 443 4455333 333444 44445545567888899986
Q ss_pred Ccc----hh----hhhHHHHHHhCCeEEEcccCcccc
Q 022968 191 TRE----IE----DDIIPLCRELGIGIVAYSPLGRGF 219 (289)
Q Consensus 191 ~~~----~~----~~~~~~~~~~gi~v~a~~pl~~G~ 219 (289)
... +. ..+.++.+++|+.+..+...+..+
T Consensus 299 ~~~~~~~ps~e~i~~f~~~L~~~gi~v~iR~~~G~di 335 (355)
T TIGR00048 299 PEADYERPSNEQIDRFAKTLMSYGFTVTIRKSRGDDI 335 (355)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHCCCeEEEeCCCCcch
Confidence 531 11 345667778899999988887654
No 69
>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain. 4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate
Probab=62.62 E-value=72 Score=27.61 Aligned_cols=103 Identities=17% Similarity=0.184 Sum_probs=58.8
Q ss_pred CCHHHHHHHHHHHHHHcCCCcccEEeecCCCC-----CCCHHHHHHHHHHHHHc-CccceeecC---CCCHHHHHHHHcc
Q 022968 107 GSPEYVRKCCEASLKRLDVDYIDLYYQHRVDT-----SVSIEDTMGELKKLVEE-GKIKYIGLS---EASADTIRRAHAV 177 (289)
Q Consensus 107 ~~~~~i~~~~~~sL~~L~~~~iDl~~lh~~~~-----~~~~~~~~~~l~~l~~~-G~ir~iGvs---~~~~~~l~~~~~~ 177 (289)
.+.+...+- -+.|.++|++++++-+...... ..+....++.++.+++. +..+...++ ......++.+.+.
T Consensus 19 ~~~~~k~~i-~~~L~~~Gv~~iEvg~~~~~~~~~~~~~~~~~~~~e~i~~~~~~~~~~~~~~~~~~~~~~~~~i~~a~~~ 97 (263)
T cd07943 19 FTLEQVRAI-ARALDAAGVPLIEVGHGDGLGGSSLNYGFAAHTDEEYLEAAAEALKQAKLGVLLLPGIGTVDDLKMAADL 97 (263)
T ss_pred cCHHHHHHH-HHHHHHcCCCEEEeecCCCCCCcccccCCCCCChHHHHHHHHHhccCCEEEEEecCCccCHHHHHHHHHc
Confidence 455555444 4568899999999975532110 00111245666666443 346666554 2335666666653
Q ss_pred CCceEEeccCCCCCcchhhhhHHHHHHhCCeEEE
Q 022968 178 HPITAVQMEYSLWTREIEDDIIPLCRELGIGIVA 211 (289)
Q Consensus 178 ~~~~~~q~~~~~~~~~~~~~~~~~~~~~gi~v~a 211 (289)
.++.+.+.+..-+.....+.+++++++|+.+..
T Consensus 98 -g~~~iri~~~~s~~~~~~~~i~~ak~~G~~v~~ 130 (263)
T cd07943 98 -GVDVVRVATHCTEADVSEQHIGAARKLGMDVVG 130 (263)
T ss_pred -CCCEEEEEechhhHHHHHHHHHHHHHCCCeEEE
Confidence 456665544433222236788999999987654
No 70
>PRK12581 oxaloacetate decarboxylase; Provisional
Probab=62.54 E-value=1.5e+02 Score=28.36 Aligned_cols=112 Identities=10% Similarity=0.086 Sum_probs=61.3
Q ss_pred CHHHHHHHHHHHHHcCCCeEeCCcCcCCCChhHHHHHHHHhc-CCCCCEEEEecccccccCCcccCCCCCHHHHHHHHHH
Q 022968 40 SHEVGCSIIKETFNRGITLFDTSDVYGVDHDNEIMVGKALKQ-LPRDKIQLATKFGCFMLDGVSIGVKGSPEYVRKCCEA 118 (289)
Q Consensus 40 ~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~~g~se~~lg~~l~~-~~R~~~~I~tK~~~~~~~~~~~~~~~~~~~i~~~~~~ 118 (289)
+.+-....++.|.+.||..|=..++-.+-...+..+. +.++ ...-.+.|+-.. ++.++.+.+.+.+++
T Consensus 103 pddvv~~fv~~a~~~Gidi~Rifd~lnd~~n~~~ai~-~ak~~G~~~~~~i~yt~----------sp~~t~~y~~~~a~~ 171 (468)
T PRK12581 103 ADDIVDKFISLSAQNGIDVFRIFDALNDPRNIQQALR-AVKKTGKEAQLCIAYTT----------SPVHTLNYYLSLVKE 171 (468)
T ss_pred cchHHHHHHHHHHHCCCCEEEEcccCCCHHHHHHHHH-HHHHcCCEEEEEEEEEe----------CCcCcHHHHHHHHHH
Confidence 4456777899999999998877766654111233333 3332 111112222221 123566777776665
Q ss_pred HHHHcCCCcccEEeecCCCCCCCHHHHHHHHHHHHHcCccceeecCCCC
Q 022968 119 SLKRLDVDYIDLYYQHRVDTSVSIEDTMGELKKLVEEGKIKYIGLSEAS 167 (289)
Q Consensus 119 sL~~L~~~~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~iGvs~~~ 167 (289)
+..+|. |.+.|-..--.....++.+.+..+++...+ -||+=.|+
T Consensus 172 -l~~~Ga---d~I~IkDtaG~l~P~~v~~Lv~alk~~~~~-pi~~H~Hn 215 (468)
T PRK12581 172 -LVEMGA---DSICIKDMAGILTPKAAKELVSGIKAMTNL-PLIVHTHA 215 (468)
T ss_pred -HHHcCC---CEEEECCCCCCcCHHHHHHHHHHHHhccCC-eEEEEeCC
Confidence 455775 445555443334455666777777665443 46775554
No 71
>PRK14461 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=62.16 E-value=87 Score=28.85 Aligned_cols=89 Identities=12% Similarity=0.167 Sum_probs=59.1
Q ss_pred EeecCCCCC-----------CCHHHHHHHHHHHHHcCc----cceeecC--CCCHHH---HHHHHccC------CceEEe
Q 022968 131 YYQHRVDTS-----------VSIEDTMGELKKLVEEGK----IKYIGLS--EASADT---IRRAHAVH------PITAVQ 184 (289)
Q Consensus 131 ~~lh~~~~~-----------~~~~~~~~~l~~l~~~G~----ir~iGvs--~~~~~~---l~~~~~~~------~~~~~q 184 (289)
+-||.|++. .+++++++++.+..++-. +-|+=+. |.+.++ |.++++.. +..+|-
T Consensus 232 iSLHA~~~e~R~~lmPin~~ypl~eLl~a~~~y~~~t~rrit~EYvLi~gvNDs~e~A~~L~~llk~~~~~~~l~~~VNL 311 (371)
T PRK14461 232 ISLHAPDDALRSELMPVNRRYPIADLMAATRDYIAKTRRRVSFEYVLLQGKNDHPEQAAALARLLRGEAPPGPLLVHVNL 311 (371)
T ss_pred EEeCCCCHHHHHHhcCcccCCCHHHHHHHHHHHHHhhCCEEEEEEEEECCCCCCHHHHHHHHHHHcCCccccCCceEEEE
Confidence 568999653 357888888888765432 3333222 444554 44455544 568899
Q ss_pred ccCCCCCcc--------hhhhhHHHHHHhCCeEEEcccCcccc
Q 022968 185 MEYSLWTRE--------IEDDIIPLCRELGIGIVAYSPLGRGF 219 (289)
Q Consensus 185 ~~~~~~~~~--------~~~~~~~~~~~~gi~v~a~~pl~~G~ 219 (289)
++||+.... .-..+.+.++++||.+..+...+..+
T Consensus 312 Ip~Np~~~~~~~~ps~~~i~~F~~~L~~~gi~vtiR~s~G~DI 354 (371)
T PRK14461 312 IPWNPVPGTPLGRSERERVTTFQRILTDYGIPCTVRVERGVEI 354 (371)
T ss_pred ecCCCCCCCCCCCCCHHHHHHHHHHHHHCCceEEEeCCCCcCh
Confidence 999996531 11467777889999999998887654
No 72
>cd08556 GDPD Glycerophosphodiester phosphodiesterase domain as found in prokaryota and eukaryota, and similar proteins. The typical glycerophosphodiester phosphodiesterase domain (GDPD) consists of a TIM barrel and a small insertion domain named the GDPD-insertion (GDPD-I) domain, which is specific for GDPD proteins. This family corresponds to both typical GDPD domain and GDPD-like domain which lacks the GDPD-I region. Members in this family mainly consist of a large family of prokaryotic and eukaryotic glycerophosphodiester phosphodiesterases (GP-GDEs, EC 3.1.4.46), and a number of uncharacterized homologs. Sphingomyelinases D (SMases D) (sphingomyelin phosphodiesterase D, EC 3.1.4.41) from spider venom, SMases D-like proteins, and phospholipase D (PLD) from several pathogenic bacteria are also included in this family. GDPD plays an essential role in glycerol metabolism and catalyzes the hydrolysis of glycerophosphodiesters to sn-glycerol-3-phosphate (G3P) and the corresponding alcoho
Probab=61.54 E-value=82 Score=25.13 Aligned_cols=152 Identities=11% Similarity=0.072 Sum_probs=75.2
Q ss_pred CHHHHHHHHHHHHHcCCCeEeCCcCcCCCCh-----hHHHHHHHHhcCC-CCCEEEEecccccccCCcccCCCCCHHHHH
Q 022968 40 SHEVGCSIIKETFNRGITLFDTSDVYGVDHD-----NEIMVGKALKQLP-RDKIQLATKFGCFMLDGVSIGVKGSPEYVR 113 (289)
Q Consensus 40 ~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~~g~-----se~~lg~~l~~~~-R~~~~I~tK~~~~~~~~~~~~~~~~~~~i~ 113 (289)
.+|++.+.++.|++.|.+.+++--....+|. .-..+-+.|+..+ +-.++|=.|.... .+.+.
T Consensus 11 ~pent~~a~~~a~~~g~~~iE~Dv~~tkDg~~vv~Hdi~tL~e~l~~~~~~~~i~leiK~~~~------------~~~~~ 78 (189)
T cd08556 11 APENTLAAFRKALEAGADGVELDVQLTKDGVLVVIHDIPTLEEVLELVKGGVGLNIELKEPTR------------YPGLE 78 (189)
T ss_pred CCchHHHHHHHHHHcCCCEEEEEeeEcCCCCEEEEcCCCCHHHHHHhcccCcEEEEEECCCCC------------chhHH
Confidence 4588999999999999999865443321111 1123344444322 2234555553211 22344
Q ss_pred HHHHHHHHHcCCCcccEEeecCCCCCCCHHHHHHHHHHHHHcCccceeecCCCCHHHHHHHHccCCceEEeccCCCCCcc
Q 022968 114 KCCEASLKRLDVDYIDLYYQHRVDTSVSIEDTMGELKKLVEEGKIKYIGLSEASADTIRRAHAVHPITAVQMEYSLWTRE 193 (289)
Q Consensus 114 ~~~~~sL~~L~~~~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~~~~~~~~~~q~~~~~~~~~ 193 (289)
+.+-+.+++.+. .+-+++...++ +.+..+.+...+=++..+--+...............++.+...+..+
T Consensus 79 ~~l~~~i~~~~~--~~~v~i~s~~~-----~~l~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--- 148 (189)
T cd08556 79 AKVAELLREYGL--EERVVVSSFDH-----EALRALKELDPEVPTGLLVDKPPLDPLLAELARALGADAVNPHYKLL--- 148 (189)
T ss_pred HHHHHHHHHcCC--cCCEEEEeCCH-----HHHHHHHHhCCCCcEEEEeecCcccchhhhHHHhcCCeEEccChhhC---
Confidence 555566666652 24444444322 23333333222212222211111111111122334455555555543
Q ss_pred hhhhhHHHHHHhCCeEEEccc
Q 022968 194 IEDDIIPLCRELGIGIVAYSP 214 (289)
Q Consensus 194 ~~~~~~~~~~~~gi~v~a~~p 214 (289)
...+++.|+++|+.+.+|..
T Consensus 149 -~~~~i~~~~~~g~~v~~wtv 168 (189)
T cd08556 149 -TPELVRAAHAAGLKVYVWTV 168 (189)
T ss_pred -CHHHHHHHHHcCCEEEEEcC
Confidence 25789999999999999875
No 73
>PF11242 DUF2774: Protein of unknown function (DUF2774); InterPro: IPR021404 This entry is represented by Bacteriophage T4, Gp24.3; it is a family of uncharacterised viral proteins.
Probab=60.48 E-value=13 Score=24.51 Aligned_cols=22 Identities=32% Similarity=0.475 Sum_probs=19.5
Q ss_pred HHHHHHHHhCCCHHHHHHHHHH
Q 022968 255 RLETLAAKYGCTTPQLALAWLL 276 (289)
Q Consensus 255 ~l~~ia~~~g~s~~q~al~w~l 276 (289)
-+-+||+++|+++.++|..|+.
T Consensus 15 ~FveIAr~~~i~a~e~a~~w~~ 36 (63)
T PF11242_consen 15 SFVEIARKIGITAKEVAKAWAE 36 (63)
T ss_pred cHHHHHHHhCCCHHHHHHHHHH
Confidence 4668999999999999999985
No 74
>cd03318 MLE Muconate Lactonizing Enzyme (MLE), an homooctameric enzyme, catalyses the conversion of cis,cis-muconate (CCM) to muconolactone (ML) in the catechol branch of the beta-ketoadipate pathway. This pathway is used in soil microbes to breakdown lignin-derived aromatics, catechol and protocatechuate, to citric acid cycle intermediates. Some bacterial species are also capable of dehalogenating chloroaromatic compounds by the action of chloromuconate lactonizing enzymes (Cl-MLEs). MLEs are members of the enolase superfamily characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and that is stabilized by coordination to the essential Mg2+ ion.
Probab=60.23 E-value=1.4e+02 Score=27.24 Aligned_cols=154 Identities=10% Similarity=0.088 Sum_probs=87.7
Q ss_pred HHHHHHHHHHHHHcC-CCeEeCCcCcCC-C-ChhHHHHHHHHhcCCCCCEEEEecccccccCCcccCCCCCHHHHHHHHH
Q 022968 41 HEVGCSIIKETFNRG-ITLFDTSDVYGV-D-HDNEIMVGKALKQLPRDKIQLATKFGCFMLDGVSIGVKGSPEYVRKCCE 117 (289)
Q Consensus 41 ~~~~~~~l~~A~~~G-i~~~DtA~~Yg~-~-g~se~~lg~~l~~~~R~~~~I~tK~~~~~~~~~~~~~~~~~~~i~~~~~ 117 (289)
.++..+.+..+++.| ++.|=.=- |. + ....+.+ +++++.-.+++.|.-=.. ..++.+...+-+
T Consensus 143 ~~~~~~~~~~~~~~G~f~~~KiKv--g~~~~~~d~~~v-~avr~~~g~~~~l~iDaN----------~~~~~~~A~~~~- 208 (365)
T cd03318 143 TERDIAEAEEMLEAGRHRRFKLKM--GARPPADDLAHV-EAIAKALGDRASVRVDVN----------QAWDESTAIRAL- 208 (365)
T ss_pred HHHHHHHHHHHHhCCCceEEEEEe--CCCChHHHHHHH-HHHHHHcCCCcEEEEECC----------CCCCHHHHHHHH-
Confidence 344556667778899 88875321 11 0 1122333 444442223343332211 124444332222
Q ss_pred HHHHHcCCCcccEEeecCCCCCCCHHHHHHHHHHHHHcCccc-eeecCCCCHHHHHHHHccCCceEEeccCCCCCcc-hh
Q 022968 118 ASLKRLDVDYIDLYYQHRVDTSVSIEDTMGELKKLVEEGKIK-YIGLSEASADTIRRAHAVHPITAVQMEYSLWTRE-IE 195 (289)
Q Consensus 118 ~sL~~L~~~~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir-~iGvs~~~~~~l~~~~~~~~~~~~q~~~~~~~~~-~~ 195 (289)
+.|+.+ ++.++..|-+. +.++.+.+|.++..+. ..|=|-++...+.++++...++++|+.....-.- ..
T Consensus 209 ~~l~~~-----~~~~iEeP~~~----~~~~~~~~l~~~~~~pia~dE~~~~~~~~~~~i~~~~~d~~~~d~~~~GGit~~ 279 (365)
T cd03318 209 PRLEAA-----GVELIEQPVPR----ENLDGLARLRSRNRVPIMADESVSGPADAFELARRGAADVFSLKIAKSGGLRRA 279 (365)
T ss_pred HHHHhc-----CcceeeCCCCc----ccHHHHHHHHhhcCCCEEcCcccCCHHHHHHHHHhCCCCeEEEeecccCCHHHH
Confidence 334444 44455555332 2467788888876665 5566677888999998888888999876654321 12
Q ss_pred hhhHHHHHHhCCeEEEcccCcc
Q 022968 196 DDIIPLCRELGIGIVAYSPLGR 217 (289)
Q Consensus 196 ~~~~~~~~~~gi~v~a~~pl~~ 217 (289)
.++..+|+++|+.++..+-...
T Consensus 280 ~~~~~~a~~~gi~~~~~~~~~s 301 (365)
T cd03318 280 QKVAAIAEAAGIALYGGTMLES 301 (365)
T ss_pred HHHHHHHHHcCCceeecCcchh
Confidence 6789999999999886443333
No 75
>cd03325 D-galactonate_dehydratase D-galactonate dehydratase catalyses the dehydration of galactonate to 2-keto-3-deoxygalactnate (KDGal), as part of the D-galactonate nonphosphorolytic catabolic Entner-Doudoroff pathway. D-galactonate dehydratase belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=58.98 E-value=1.4e+02 Score=27.05 Aligned_cols=154 Identities=12% Similarity=0.082 Sum_probs=90.1
Q ss_pred CHHHHHHHHHHHHHcCCCeEeCCcCcCC---C----ChhHHHHHHHHhcCCCCCEEEEecccccccCCcccCCCCCHHHH
Q 022968 40 SHEVGCSIIKETFNRGITLFDTSDVYGV---D----HDNEIMVGKALKQLPRDKIQLATKFGCFMLDGVSIGVKGSPEYV 112 (289)
Q Consensus 40 ~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~---~----g~se~~lg~~l~~~~R~~~~I~tK~~~~~~~~~~~~~~~~~~~i 112 (289)
+.++..+.+..+.+.|++.|=.--.... + -..+...=+++++.-.+++.|..=.. ..++.+..
T Consensus 123 ~~~~~~~~~~~~~~~Gf~~~KiKvg~~~~~~~~~~~~~~D~~~i~avr~~~g~~~~l~vDaN----------~~~~~~~A 192 (352)
T cd03325 123 RPSDVAEAARARREAGFTAVKMNATEELQWIDTSKKVDAAVERVAALREAVGPDIDIGVDFH----------GRVSKPMA 192 (352)
T ss_pred CHHHHHHHHHHHHHcCCCEEEecCCCCcccCCCHHHHHHHHHHHHHHHHhhCCCCEEEEECC----------CCCCHHHH
Confidence 4556677777888999998864321110 0 01222333344442223444433221 12444432
Q ss_pred HHHHHHHHHHcCCCcccEEeecCCCCCCCHHHHHHHHHHHHHcCccc-eeecCCCCHHHHHHHHccCCceEEeccCCCCC
Q 022968 113 RKCCEASLKRLDVDYIDLYYQHRVDTSVSIEDTMGELKKLVEEGKIK-YIGLSEASADTIRRAHAVHPITAVQMEYSLWT 191 (289)
Q Consensus 113 ~~~~~~sL~~L~~~~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir-~iGvs~~~~~~l~~~~~~~~~~~~q~~~~~~~ 191 (289)
.+-++.|. ..++.++..|-+. +.++.+..|++..-+. ..|=|.++...+..+++...++++|......-
T Consensus 193 ----~~~~~~l~--~~~i~~iEeP~~~----~d~~~~~~L~~~~~~pia~dEs~~~~~~~~~~~~~~~~d~v~~d~~~~G 262 (352)
T cd03325 193 ----KDLAKELE--PYRLLFIEEPVLP----ENVEALAEIAARTTIPIATGERLFSRWDFKELLEDGAVDIIQPDISHAG 262 (352)
T ss_pred ----HHHHHhcc--ccCCcEEECCCCc----cCHHHHHHHHHhCCCCEEecccccCHHHHHHHHHhCCCCEEecCccccC
Confidence 23334442 2455556655432 2377788888876555 44556788899999888778899999866543
Q ss_pred cc-hhhhhHHHHHHhCCeEEEcc
Q 022968 192 RE-IEDDIIPLCRELGIGIVAYS 213 (289)
Q Consensus 192 ~~-~~~~~~~~~~~~gi~v~a~~ 213 (289)
.- .-.++.+.|+++|+.++..+
T Consensus 263 Git~~~~~~~lA~~~gi~~~~h~ 285 (352)
T cd03325 263 GITELKKIAAMAEAYDVALAPHC 285 (352)
T ss_pred CHHHHHHHHHHHHHcCCcEeccC
Confidence 21 22689999999999998654
No 76
>PF13378 MR_MLE_C: Enolase C-terminal domain-like; PDB: 3FCP_B 3P0W_D 3VFC_A 3VDG_A 3FJ4_B 3CT2_B 3DGB_A 3V3W_A 3V4B_A 3NO1_E ....
Probab=58.61 E-value=14 Score=27.16 Aligned_cols=55 Identities=22% Similarity=0.176 Sum_probs=40.3
Q ss_pred CCCCHHHHHHHHccCCceEEeccCCCCCc-chhhhhHHHHHHhCCeEEEcccCcccc
Q 022968 164 SEASADTIRRAHAVHPITAVQMEYSLWTR-EIEDDIIPLCRELGIGIVAYSPLGRGF 219 (289)
Q Consensus 164 s~~~~~~l~~~~~~~~~~~~q~~~~~~~~-~~~~~~~~~~~~~gi~v~a~~pl~~G~ 219 (289)
|.++...++++++...++++|+.....-. .....+.++|+++|+.+...+. ..++
T Consensus 3 ~~~~~~~~~~li~~~a~d~~~~~~~~~GGit~~~~i~~~A~~~gi~~~~h~~-~~~i 58 (111)
T PF13378_consen 3 SLFSLHDFRRLIEAGAVDIVQIDPTRCGGITEALRIAALAEAHGIPVMPHSM-ESGI 58 (111)
T ss_dssp TSSSHHHHHHHHHTTSCSEEEEBHHHHTSHHHHHHHHHHHHHTT-EEEEBSS-SSHH
T ss_pred CCCCHHHHHHHHHcCCCCEEEeCchhcCCHHHHHHHHHHHHHhCCCEEecCC-CCcH
Confidence 45678888888888888999987554422 1126799999999999999886 5443
No 77
>PLN02746 hydroxymethylglutaryl-CoA lyase
Probab=58.29 E-value=61 Score=29.56 Aligned_cols=99 Identities=9% Similarity=0.006 Sum_probs=56.0
Q ss_pred CCHHHHHHHHHHHHHHcCCCcccEEeecCCCC--C-CCHHHHHHHHHHHHHcCccceeecCCCCHHHHHHHHccCCceEE
Q 022968 107 GSPEYVRKCCEASLKRLDVDYIDLYYQHRVDT--S-VSIEDTMGELKKLVEEGKIKYIGLSEASADTIRRAHAVHPITAV 183 (289)
Q Consensus 107 ~~~~~i~~~~~~sL~~L~~~~iDl~~lh~~~~--~-~~~~~~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~~~~~~~~~~ 183 (289)
.+.+. +..+-+.|.++|+++|++-..-.|.. . .+.++.++.+ ++...++..++. .+...++.+++... +.+
T Consensus 65 ~s~e~-Ki~ia~~L~~~GV~~IEvGs~vspk~vPqmad~~ev~~~i---~~~~~~~~~~l~-~n~~die~A~~~g~-~~v 138 (347)
T PLN02746 65 VPTSV-KVELIQRLVSSGLPVVEATSFVSPKWVPQLADAKDVMAAV---RNLEGARFPVLT-PNLKGFEAAIAAGA-KEV 138 (347)
T ss_pred CCHHH-HHHHHHHHHHcCCCEEEECCCcCcccccccccHHHHHHHH---HhccCCceeEEc-CCHHHHHHHHHcCc-CEE
Confidence 34444 44556779999999999864444421 1 1223444444 333335555554 47788888877532 222
Q ss_pred ecc---------CCCCCcchh-----hhhHHHHHHhCCeEEE
Q 022968 184 QME---------YSLWTREIE-----DDIIPLCRELGIGIVA 211 (289)
Q Consensus 184 q~~---------~~~~~~~~~-----~~~~~~~~~~gi~v~a 211 (289)
.+. .|+-....+ .+++++|+++|+.+.+
T Consensus 139 ~i~~s~Sd~h~~~n~~~t~~e~l~~~~~~v~~Ak~~Gl~v~~ 180 (347)
T PLN02746 139 AVFASASESFSKSNINCSIEESLVRYREVALAAKKHSIPVRG 180 (347)
T ss_pred EEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEEE
Confidence 222 222211111 4789999999998853
No 78
>cd03321 mandelate_racemase Mandelate racemase (MR) catalyzes the Mg2+-dependent 1,1-proton transfer reaction that interconverts the enantiomers of mandelic acid. MR is the first enzyme in the bacterial pathway that converts mandelic acid to benzoic acid and allows this pathway to utilize either enantiomer of mandelate. MR belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=57.93 E-value=1.5e+02 Score=26.94 Aligned_cols=152 Identities=11% Similarity=0.059 Sum_probs=88.4
Q ss_pred CHHHHHHHHHHHHHcCCCeEeCCcCcCCCChhHHHHHHHHhcCCCCCEEEEecccccccCCcccCCCCCHHHHHHHHHHH
Q 022968 40 SHEVGCSIIKETFNRGITLFDTSDVYGVDHDNEIMVGKALKQLPRDKIQLATKFGCFMLDGVSIGVKGSPEYVRKCCEAS 119 (289)
Q Consensus 40 ~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~~g~se~~lg~~l~~~~R~~~~I~tK~~~~~~~~~~~~~~~~~~~i~~~~~~s 119 (289)
+.++..+.+..+.+.|++.|=.=-...+ -..+...=+++++.-.+++.|..-.. ..++.+...+-+ +.
T Consensus 141 ~~~~~~~~a~~~~~~Gf~~~KiKvg~~~-~~~d~~~v~air~~~g~~~~l~vDaN----------~~~~~~~A~~~~-~~ 208 (355)
T cd03321 141 GAKLATERAVTAAEEGFHAVKTKIGYPT-ADEDLAVVRSIRQAVGDGVGLMVDYN----------QSLTVPEAIERG-QA 208 (355)
T ss_pred hHHHHHHHHHHHHHhhhHHHhhhcCCCC-hHhHHHHHHHHHHhhCCCCEEEEeCC----------CCcCHHHHHHHH-HH
Confidence 3455666777777889887642211111 11233333455543334555554332 124555433333 33
Q ss_pred HHHcCCCcccEEeecCCCCCCCHHHHHHHHHHHHHcCccc-eeecCCCCHHHHHHHHccCCceEEeccCCCCCcc-hhhh
Q 022968 120 LKRLDVDYIDLYYQHRVDTSVSIEDTMGELKKLVEEGKIK-YIGLSEASADTIRRAHAVHPITAVQMEYSLWTRE-IEDD 197 (289)
Q Consensus 120 L~~L~~~~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir-~iGvs~~~~~~l~~~~~~~~~~~~q~~~~~~~~~-~~~~ 197 (289)
|+.+ ++.++..|-.. +.++.+.+|++.--|. ..|=+.++...+..+++...++++|+..+.+-.- .-.+
T Consensus 209 l~~~-----~i~~iEeP~~~----~d~~~~~~l~~~~~ipia~~E~~~~~~~~~~~i~~~~~d~i~~~~~~~GGit~~~~ 279 (355)
T cd03321 209 LDQE-----GLTWIEEPTLQ----HDYEGHARIASALRTPVQMGENWLGPEEMFKALSAGACDLVMPDLMKIGGVTGWLR 279 (355)
T ss_pred HHcC-----CCCEEECCCCC----cCHHHHHHHHHhcCCCEEEcCCCcCHHHHHHHHHhCCCCeEecCHhhhCCHHHHHH
Confidence 3444 44455555432 2367777887765433 3455667889999998888899999887765321 1267
Q ss_pred hHHHHHHhCCeEEEc
Q 022968 198 IIPLCRELGIGIVAY 212 (289)
Q Consensus 198 ~~~~~~~~gi~v~a~ 212 (289)
+.++|+.+|+.++..
T Consensus 280 ia~~A~~~gi~~~~h 294 (355)
T cd03321 280 ASALAEQAGIPMSSH 294 (355)
T ss_pred HHHHHHHcCCeeccc
Confidence 899999999998643
No 79
>TIGR03822 AblA_like_2 lysine-2,3-aminomutase-related protein. Members of this protein form a distinctive clade, homologous to lysine-2,3-aminomutase (of Bacillus, Clostridium, and methanogenic archaea) and likely similar in function. Members of this family are found in Rhodopseudomonas, Caulobacter crescentus, Bradyrhizobium, etc.
Probab=57.75 E-value=1.4e+02 Score=26.73 Aligned_cols=109 Identities=16% Similarity=0.063 Sum_probs=60.4
Q ss_pred CHHHHHHHHHHHHHHcCCCcccEEeecCCCCCC-CHHHHHHHHHHHHHcCccceeecCC---------CCHHHHHHHHcc
Q 022968 108 SPEYVRKCCEASLKRLDVDYIDLYYQHRVDTSV-SIEDTMGELKKLVEEGKIKYIGLSE---------ASADTIRRAHAV 177 (289)
Q Consensus 108 ~~~~i~~~~~~sL~~L~~~~iDl~~lh~~~~~~-~~~~~~~~l~~l~~~G~ir~iGvs~---------~~~~~l~~~~~~ 177 (289)
+.+.+.+.++..-+..+ +.-+.+-.-|+.. +.....+.++.+++.|.|+.+.+.+ .+.+.++.+.+.
T Consensus 120 ~~~e~~~~i~~i~~~~~---I~~VilSGGDPl~~~~~~L~~ll~~l~~i~~v~~iri~Tr~~v~~p~rit~ell~~L~~~ 196 (321)
T TIGR03822 120 SPAELDAAFAYIADHPE---IWEVILTGGDPLVLSPRRLGDIMARLAAIDHVKIVRFHTRVPVADPARVTPALIAALKTS 196 (321)
T ss_pred CHHHHHHHHHHHHhCCC---ccEEEEeCCCcccCCHHHHHHHHHHHHhCCCccEEEEeCCCcccChhhcCHHHHHHHHHc
Confidence 34445444443322222 3334455445543 2456778888888888876555533 233444444444
Q ss_pred CCceEEeccCCCCC--cchhhhhHHHHHHhCCeEEEcccCcccc
Q 022968 178 HPITAVQMEYSLWT--REIEDDIIPLCRELGIGIVAYSPLGRGF 219 (289)
Q Consensus 178 ~~~~~~q~~~~~~~--~~~~~~~~~~~~~~gi~v~a~~pl~~G~ 219 (289)
.....+-++.|-.. .....+-++.+++.||.+...+++..|.
T Consensus 197 g~~v~i~l~~~h~~el~~~~~~ai~~L~~~Gi~v~~q~vLl~gv 240 (321)
T TIGR03822 197 GKTVYVALHANHARELTAEARAACARLIDAGIPMVSQSVLLRGV 240 (321)
T ss_pred CCcEEEEecCCChhhcCHHHHHHHHHHHHcCCEEEEEeeEeCCC
Confidence 32233444443211 1112457778889999999989998775
No 80
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=57.65 E-value=62 Score=30.15 Aligned_cols=108 Identities=11% Similarity=0.165 Sum_probs=73.2
Q ss_pred HHHHHHHHHcCCCeEeCCcCcCCCChhHHHHHHHHhcCCCCCEEEEecccccccCCcccCCCCCHHHHHHHHHHHHHHcC
Q 022968 45 CSIIKETFNRGITLFDTSDVYGVDHDNEIMVGKALKQLPRDKIQLATKFGCFMLDGVSIGVKGSPEYVRKCCEASLKRLD 124 (289)
Q Consensus 45 ~~~l~~A~~~Gi~~~DtA~~Yg~~g~se~~lg~~l~~~~R~~~~I~tK~~~~~~~~~~~~~~~~~~~i~~~~~~sL~~L~ 124 (289)
...+.++++.|- +-..-.||+||.-.+.+.+.|......++.-.+-+ ..+.+.+++.++++.+.++
T Consensus 36 ~~~lrr~v~~~~--l~SmIl~GPPG~GKTTlA~liA~~~~~~f~~~sAv------------~~gvkdlr~i~e~a~~~~~ 101 (436)
T COG2256 36 GKPLRRAVEAGH--LHSMILWGPPGTGKTTLARLIAGTTNAAFEALSAV------------TSGVKDLREIIEEARKNRL 101 (436)
T ss_pred CchHHHHHhcCC--CceeEEECCCCCCHHHHHHHHHHhhCCceEEeccc------------cccHHHHHHHHHHHHHHHh
Confidence 456889999874 33334899999999999999986333333322222 2356889999999988877
Q ss_pred CCcccEEeecCCCCCCCHHHHHHHHHHHHHcCccceeecCCCCH
Q 022968 125 VDYIDLYYQHRVDTSVSIEDTMGELKKLVEEGKIKYIGLSEASA 168 (289)
Q Consensus 125 ~~~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~iGvs~~~~ 168 (289)
..+=-++++...-.. ....-++|.-.+++|.|-.||.++-++
T Consensus 102 ~gr~tiLflDEIHRf--nK~QQD~lLp~vE~G~iilIGATTENP 143 (436)
T COG2256 102 LGRRTILFLDEIHRF--NKAQQDALLPHVENGTIILIGATTENP 143 (436)
T ss_pred cCCceEEEEehhhhc--ChhhhhhhhhhhcCCeEEEEeccCCCC
Confidence 555556666322111 123457788899999999999987544
No 81
>TIGR01228 hutU urocanate hydratase. This model represents the second of four enzymes involved in the degradation of histidine to glutamate.
Probab=57.42 E-value=24 Score=33.48 Aligned_cols=141 Identities=18% Similarity=0.198 Sum_probs=87.3
Q ss_pred CCCcccCccccccccCCCCCCCCCCHHHHHHHHHHHHHcCCCeEe--CCcCc---CCC----ChhHHHHHHHHhc---CC
Q 022968 16 SQGLEVSRLGFGCGGLSGIYNKPLSHEVGCSIIKETFNRGITLFD--TSDVY---GVD----HDNEIMVGKALKQ---LP 83 (289)
Q Consensus 16 ~~g~~vs~lg~G~~~~~~~~~~~~~~~~~~~~l~~A~~~Gi~~~D--tA~~Y---g~~----g~se~~lg~~l~~---~~ 83 (289)
+|--.-|++.+-...+-..|.+ -+-+....+.|+..+- ||-+| |.+ |.-|+++..+=+. .-
T Consensus 84 ~th~~APRVliaNs~lVp~wa~-------~e~f~~l~~~Gl~mYGQMTAGsw~YIG~QGIvqGTyeT~~~aark~f~~~L 156 (545)
T TIGR01228 84 KTHENAPRVLIANSNLVPHWAD-------WEHFHELEAKGLMMYGQMTAGSWIYIGTQGILQGTYETFAELARQHFGGSL 156 (545)
T ss_pred cCCCCCCeEEEEcCccccCCCC-------HHHHHHHHHcccccccCccccceEEEcCcceeecHHHHHHHHHHHhcCCCC
Confidence 3444455555543333222322 2335566677887664 55544 221 5556555443332 24
Q ss_pred CCCEEEEecccccccCCccc---------CCCCCHHHHHHHHHHHHHHcCCCcccEEeecCCCCCCCHHHHHHHHHHHHH
Q 022968 84 RDKIQLATKFGCFMLDGVSI---------GVKGSPEYVRKCCEASLKRLDVDYIDLYYQHRVDTSVSIEDTMGELKKLVE 154 (289)
Q Consensus 84 R~~~~I~tK~~~~~~~~~~~---------~~~~~~~~i~~~~~~sL~~L~~~~iDl~~lh~~~~~~~~~~~~~~l~~l~~ 154 (289)
+-++||++-+|.....++.. .-..++ .+.-+|+.+.|+|.+ ..+++++++..++.++
T Consensus 157 ~G~~~lTaGLGGMgGAQPlA~~mag~v~i~vEvd~-------~ri~kR~~~gyld~~-------~~~ldeal~~~~~a~~ 222 (545)
T TIGR01228 157 KGKWVLTAGLGGMGGAQPLAVTMNGGVSIAVEVDE-------SRIDKRLETKYCDEQ-------TDSLDEALARAEEAKA 222 (545)
T ss_pred ceeEEEEeCCCccccccHHHHHHcCceEEEEEECH-------HHHHHHHhcCcceeE-------cCCHHHHHHHHHHHHH
Confidence 67788888887654432100 001122 344578889999864 2468899999999999
Q ss_pred cCccceeecCCCCHHHHHHHHcc
Q 022968 155 EGKIKYIGLSEASADTIRRAHAV 177 (289)
Q Consensus 155 ~G~ir~iGvs~~~~~~l~~~~~~ 177 (289)
+|+..+||+-..-++.+.++.+.
T Consensus 223 ~~~~~SIg~~GNaadv~~~l~~r 245 (545)
T TIGR01228 223 EGKPISIGLLGNAAEVLPELLKR 245 (545)
T ss_pred cCCceEEEeeccHHHHHHHHHHc
Confidence 99999999999889999988875
No 82
>PRK05414 urocanate hydratase; Provisional
Probab=57.35 E-value=25 Score=33.49 Aligned_cols=124 Identities=17% Similarity=0.161 Sum_probs=78.0
Q ss_pred HHHHHHHcCCCeEe--CCcCc---CCC----ChhHHHHHHHHhc---CCCCCEEEEecccccccCCcccCC--CCCHHHH
Q 022968 47 IIKETFNRGITLFD--TSDVY---GVD----HDNEIMVGKALKQ---LPRDKIQLATKFGCFMLDGVSIGV--KGSPEYV 112 (289)
Q Consensus 47 ~l~~A~~~Gi~~~D--tA~~Y---g~~----g~se~~lg~~l~~---~~R~~~~I~tK~~~~~~~~~~~~~--~~~~~~i 112 (289)
-+....+.|+..+- ||-+| |.+ |.-|+++..+=+. ..+-++||++-+|.....++.... ....=-+
T Consensus 117 ~f~~l~~~Gl~mYGQMTAGsw~YIG~QGIvqGTyeT~~~a~rk~f~g~L~G~~~lTaGLGGMgGAQPlA~~mag~v~i~v 196 (556)
T PRK05414 117 HFNELEAKGLTMYGQMTAGSWIYIGSQGIVQGTYETFAEAARQHFGGDLAGRLVLTAGLGGMGGAQPLAATMAGAVCLAV 196 (556)
T ss_pred HHHHHHHcccccccCccccceeEEcCceeeecHHHHHHHHHHHhcCCCCceeEEEEecCCccccccHHHHHhcCceEEEE
Confidence 35566677877654 55544 221 5556555444332 246778999888765543210000 0000000
Q ss_pred HHHHHHHHHHcCCCcccEEeecCCCCCCCHHHHHHHHHHHHHcCccceeecCCCCHHHHHHHHcc
Q 022968 113 RKCCEASLKRLDVDYIDLYYQHRVDTSVSIEDTMGELKKLVEEGKIKYIGLSEASADTIRRAHAV 177 (289)
Q Consensus 113 ~~~~~~sL~~L~~~~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~~~~ 177 (289)
+-.-.+.-+|+.+.|+|.+ ..+++++++..++.+++|+..+||+-..-++.+.++.+.
T Consensus 197 Evd~~ri~kR~~~gyld~~-------~~~Ldeal~~~~~a~~~~~~~SIg~~GNaadv~~~l~~~ 254 (556)
T PRK05414 197 EVDESRIDKRLRTGYLDEK-------ADDLDEALALAEEAKAAGEPLSIGLLGNAADVLPELVRR 254 (556)
T ss_pred EECHHHHHHHHhCCcceeE-------cCCHHHHHHHHHHHHHcCCceEEEEeccHHHHHHHHHHc
Confidence 0112344578889999864 246889999999999999999999999888999888775
No 83
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=57.18 E-value=1.3e+02 Score=26.15 Aligned_cols=104 Identities=13% Similarity=0.209 Sum_probs=61.1
Q ss_pred CCCCHHHHHHHHHHHHHHcCCCcccEEeecCCCCC------CCHHHHHHHHHHHHHcCccceeecCCCC---HHHHHHHH
Q 022968 105 VKGSPEYVRKCCEASLKRLDVDYIDLYYQHRVDTS------VSIEDTMGELKKLVEEGKIKYIGLSEAS---ADTIRRAH 175 (289)
Q Consensus 105 ~~~~~~~i~~~~~~sL~~L~~~~iDl~~lh~~~~~------~~~~~~~~~l~~l~~~G~ir~iGvs~~~---~~~l~~~~ 175 (289)
..++.+...+ +-+.|.++|+++|++-+....... ....+.++.+..+.+ +..+..+++... .+.+..+.
T Consensus 15 ~~f~~~~~~~-ia~~L~~~GVd~IEvG~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~~~~~~~~~~~~~~~~~~l~~a~ 92 (266)
T cd07944 15 WDFGDEFVKA-IYRALAAAGIDYVEIGYRSSPEKEFKGKSAFCDDEFLRRLLGDSK-GNTKIAVMVDYGNDDIDLLEPAS 92 (266)
T ss_pred ccCCHHHHHH-HHHHHHHCCCCEEEeecCCCCccccCCCccCCCHHHHHHHHhhhc-cCCEEEEEECCCCCCHHHHHHHh
Confidence 3456666544 446699999999999776543211 011455666665543 346666665443 45555554
Q ss_pred ccCCceEEeccCCCCCcchhhhhHHHHHHhCCeEEE
Q 022968 176 AVHPITAVQMEYSLWTREIEDDIIPLCRELGIGIVA 211 (289)
Q Consensus 176 ~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~gi~v~a 211 (289)
+ ..++.+.+.+..-.-+.-.+.+++++++|+.|..
T Consensus 93 ~-~gv~~iri~~~~~~~~~~~~~i~~ak~~G~~v~~ 127 (266)
T cd07944 93 G-SVVDMIRVAFHKHEFDEALPLIKAIKEKGYEVFF 127 (266)
T ss_pred c-CCcCEEEEecccccHHHHHHHHHHHHHCCCeEEE
Confidence 4 3345555544333322236789999999987664
No 84
>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit.
Probab=56.58 E-value=1.1e+02 Score=26.37 Aligned_cols=89 Identities=16% Similarity=0.117 Sum_probs=50.8
Q ss_pred HHHHHcCCCcccEEeecCCCCCCCHH-HHHHHHHHHHHcCccceeecCC-CCHHHHHHHHccCCceEEeccCCCCCcc-h
Q 022968 118 ASLKRLDVDYIDLYYQHRVDTSVSIE-DTMGELKKLVEEGKIKYIGLSE-ASADTIRRAHAVHPITAVQMEYSLWTRE-I 194 (289)
Q Consensus 118 ~sL~~L~~~~iDl~~lh~~~~~~~~~-~~~~~l~~l~~~G~ir~iGvs~-~~~~~l~~~~~~~~~~~~q~~~~~~~~~-~ 194 (289)
+-|+.+| +|.+.+|..+.+.... --|+.+.++++.-.+.-|.... .+.+.+.+++.....+.+.+---+.... .
T Consensus 162 ~~l~~~G---~~~iivt~i~~~g~~~g~~~~~~~~i~~~~~ipvia~GGi~s~~di~~~~~~g~~dgv~~g~a~~~~~~~ 238 (254)
T TIGR00735 162 KEVEKLG---AGEILLTSMDKDGTKSGYDLELTKAVSEAVKIPVIASGGAGKPEHFYEAFTKGKADAALAASVFHYREIT 238 (254)
T ss_pred HHHHHcC---CCEEEEeCcCcccCCCCCCHHHHHHHHHhCCCCEEEeCCCCCHHHHHHHHHcCCcceeeEhHHHhCCCCC
Confidence 4445666 5666677654432111 1256666666665666665553 3577888887766555544311111111 1
Q ss_pred hhhhHHHHHHhCCeE
Q 022968 195 EDDIIPLCRELGIGI 209 (289)
Q Consensus 195 ~~~~~~~~~~~gi~v 209 (289)
..++.+.|+++|+.+
T Consensus 239 ~~~~~~~~~~~gi~~ 253 (254)
T TIGR00735 239 IGEVKEYLAERGIPV 253 (254)
T ss_pred HHHHHHHHHHCCCcc
Confidence 267899999999874
No 85
>PF14871 GHL6: Hypothetical glycosyl hydrolase 6
Probab=56.37 E-value=27 Score=26.98 Aligned_cols=25 Identities=28% Similarity=0.577 Sum_probs=21.7
Q ss_pred cchhhhhHHHHHHhCCeEEEcccCc
Q 022968 192 REIEDDIIPLCRELGIGIVAYSPLG 216 (289)
Q Consensus 192 ~~~~~~~~~~~~~~gi~v~a~~pl~ 216 (289)
++...++++.|+++||.|++|-.+.
T Consensus 43 ~Dllge~v~a~h~~Girv~ay~~~~ 67 (132)
T PF14871_consen 43 RDLLGEQVEACHERGIRVPAYFDFS 67 (132)
T ss_pred cCHHHHHHHHHHHCCCEEEEEEeee
Confidence 4445899999999999999998886
No 86
>COG2949 SanA Uncharacterized membrane protein [Function unknown]
Probab=56.26 E-value=1.2e+02 Score=25.55 Aligned_cols=98 Identities=14% Similarity=0.316 Sum_probs=70.4
Q ss_pred HHHHHHHHHHHHcCCCcccEEeecCCCCCCCHHHHHHHHHHHHHcCc------cceeecCCCCH-HHHHHHHccCCceEE
Q 022968 111 YVRKCCEASLKRLDVDYIDLYYQHRVDTSVSIEDTMGELKKLVEEGK------IKYIGLSEASA-DTIRRAHAVHPITAV 183 (289)
Q Consensus 111 ~i~~~~~~sL~~L~~~~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~------ir~iGvs~~~~-~~l~~~~~~~~~~~~ 183 (289)
.....++..-+-..-..++-+++-........+|-+...+.|.+.|- ..|-|+++.+. -...+..+...|.++
T Consensus 77 yy~~Ri~aA~~ly~~gKV~~LLlSGDN~~~sYnEp~tM~kdL~~~GVp~~~i~lDyAGFrTLDSvvRA~kVF~~~~ftII 156 (235)
T COG2949 77 YYTYRIDAAIALYKAGKVNYLLLSGDNATVSYNEPRTMRKDLIAAGVPAKNIFLDYAGFRTLDSVVRARKVFGTNDFTII 156 (235)
T ss_pred hHHHHHHHHHHHHhcCCeeEEEEecCCCcccccchHHHHHHHHHcCCCHHHeeecccCccHHHHHHHHHHHcCcCcEEEE
Confidence 34556666666677778999999887777778889999999999996 45667777643 234455556777777
Q ss_pred eccCCCCCcchhhhhHHHHHHhCCeEEEccc
Q 022968 184 QMEYSLWTREIEDDIIPLCRELGIGIVAYSP 214 (289)
Q Consensus 184 q~~~~~~~~~~~~~~~~~~~~~gi~v~a~~p 214 (289)
--+|+. +..+=.|+.+||.-+++..
T Consensus 157 tQ~FHc------eRAlfiA~~~gIdAic~~a 181 (235)
T COG2949 157 TQRFHC------ERALFIARQMGIDAICFAA 181 (235)
T ss_pred eccccc------HHHHHHHHHhCCceEEecC
Confidence 666664 4567789999999876543
No 87
>COG2102 Predicted ATPases of PP-loop superfamily [General function prediction only]
Probab=56.15 E-value=43 Score=28.41 Aligned_cols=101 Identities=16% Similarity=0.261 Sum_probs=60.5
Q ss_pred CCHHHHHHHHHHHHHcCccceeec----CCCCHHHHHHHHccCCceEEeccCCCCCcchhhhhHHHHHHhCCeEEEcccC
Q 022968 140 VSIEDTMGELKKLVEEGKIKYIGL----SEASADTIRRAHAVHPITAVQMEYSLWTREIEDDIIPLCRELGIGIVAYSPL 215 (289)
Q Consensus 140 ~~~~~~~~~l~~l~~~G~ir~iGv----s~~~~~~l~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~gi~v~a~~pl 215 (289)
...++..++|..|+ +..|.. |.+....++.+++..... .|.|+-+....++++..-+.|..++.-+.-
T Consensus 73 ~eve~L~~~l~~l~----~d~iv~GaI~s~yqk~rve~lc~~lGl~----~~~PLWg~d~~ell~e~~~~Gf~~~Iv~Vs 144 (223)
T COG2102 73 REVEELKEALRRLK----VDGIVAGAIASEYQKERVERLCEELGLK----VYAPLWGRDPEELLEEMVEAGFEAIIVAVS 144 (223)
T ss_pred hhHHHHHHHHHhCc----ccEEEEchhhhHHHHHHHHHHHHHhCCE----EeecccCCCHHHHHHHHHHcCCeEEEEEEe
Confidence 45667777777777 555544 344455566666654432 244544443467888777888887777777
Q ss_pred ccccCCCCCCCCCCCcchhhhcCCCCCccchHHHHHHHHHHHHHHHHhCCCHH
Q 022968 216 GRGFFAGKAVVESLPSESILAMHPRFSGENLEKNKLLYTRLETLAAKYGCTTP 268 (289)
Q Consensus 216 ~~G~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ia~~~g~s~~ 268 (289)
+.|+-.. |.+..+ ..+..+.+..+.++||+.|+
T Consensus 145 a~gL~~~------------------~lGr~i--~~~~~e~l~~l~~~ygi~~~ 177 (223)
T COG2102 145 AEGLDES------------------WLGRRI--DREFLEELKSLNRRYGIHPA 177 (223)
T ss_pred ccCCChH------------------HhCCcc--CHHHHHHHHHHHHhcCCCcc
Confidence 7776210 000000 12445788899999998764
No 88
>PRK00730 rnpA ribonuclease P; Reviewed
Probab=56.12 E-value=70 Score=25.02 Aligned_cols=63 Identities=8% Similarity=0.163 Sum_probs=43.9
Q ss_pred CCCCEEEEecccccccCCcccCCCCCHHHHHHHHHHHHHHcC--CCcccEEeecCCCCCCCHHHHHHHHHHHHHc
Q 022968 83 PRDKIQLATKFGCFMLDGVSIGVKGSPEYVRKCCEASLKRLD--VDYIDLYYQHRVDTSVSIEDTMGELKKLVEE 155 (289)
Q Consensus 83 ~R~~~~I~tK~~~~~~~~~~~~~~~~~~~i~~~~~~sL~~L~--~~~iDl~~lh~~~~~~~~~~~~~~l~~l~~~ 155 (289)
.|=-+.|+-|++.. ..+..|++.+.++++... ....|++++.......++.++.+.|..+.++
T Consensus 46 ~RlG~sVSKKvg~A----------V~RNRiKR~lREafR~~~~~l~g~DiVviaR~~~~~~f~~L~~~l~~~~~~ 110 (138)
T PRK00730 46 CKVGITVSKKFGKA----------HQRNRFKRIVREAFRHVRHNLPGCQIVVSPKGNSQPDFLKLLQDFLQQIPE 110 (138)
T ss_pred ceEEEEEecccccc----------hhHHHHHHHHHHHHHHhhcccCCceEEEEeccccCCCHHHHHHHHHHHHHH
Confidence 45557777777642 356778888888777653 3468999999887666777777776666554
No 89
>PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional
Probab=56.10 E-value=27 Score=30.86 Aligned_cols=102 Identities=11% Similarity=0.058 Sum_probs=59.0
Q ss_pred CCHHHHHHHHHHHHHHcCCCcccEEeecCCCCCCCHHHHHHHHHHHHHcCccceeecCCCCHHHHHHHHccCCceEEecc
Q 022968 107 GSPEYVRKCCEASLKRLDVDYIDLYYQHRVDTSVSIEDTMGELKKLVEEGKIKYIGLSEASADTIRRAHAVHPITAVQME 186 (289)
Q Consensus 107 ~~~~~i~~~~~~sL~~L~~~~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~~~~~~~~~~q~~ 186 (289)
.+.+.. ..+-+.|.++|+++|++-..+.|...-...+.++.+..+.+...++...+. .+...++.+.+.. ++.+.+.
T Consensus 23 ~s~e~k-~~ia~~L~~~Gv~~IEvgsf~~p~~~p~~~d~~e~~~~l~~~~~~~~~~l~-~~~~~ie~A~~~g-~~~v~i~ 99 (287)
T PRK05692 23 IPTADK-IALIDRLSAAGLSYIEVASFVSPKWVPQMADAAEVMAGIQRRPGVTYAALT-PNLKGLEAALAAG-ADEVAVF 99 (287)
T ss_pred cCHHHH-HHHHHHHHHcCCCEEEeCCCcCcccccccccHHHHHHhhhccCCCeEEEEe-cCHHHHHHHHHcC-CCEEEEE
Confidence 445543 345567899999999987554443111122346666666654456665554 4677788777752 2333322
Q ss_pred CCC---------CCcc-----hhhhhHHHHHHhCCeEEE
Q 022968 187 YSL---------WTRE-----IEDDIIPLCRELGIGIVA 211 (289)
Q Consensus 187 ~~~---------~~~~-----~~~~~~~~~~~~gi~v~a 211 (289)
++. -... .-.+.+++++++|+.+.+
T Consensus 100 ~~~s~~~~~~n~~~~~~e~l~~~~~~v~~ak~~g~~v~~ 138 (287)
T PRK05692 100 ASASEAFSQKNINCSIAESLERFEPVAEAAKQAGVRVRG 138 (287)
T ss_pred EecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCEEEE
Confidence 221 1111 015689999999998864
No 90
>PRK14462 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=56.05 E-value=1.5e+02 Score=27.22 Aligned_cols=87 Identities=11% Similarity=0.155 Sum_probs=56.4
Q ss_pred ecCCCCC-----------CCHHHHHHHHHHHH-HcCc---cceeecCC--CCHHHHHH---HHccCCceEEeccCCCCCc
Q 022968 133 QHRVDTS-----------VSIEDTMGELKKLV-EEGK---IKYIGLSE--ASADTIRR---AHAVHPITAVQMEYSLWTR 192 (289)
Q Consensus 133 lh~~~~~-----------~~~~~~~~~l~~l~-~~G~---ir~iGvs~--~~~~~l~~---~~~~~~~~~~q~~~~~~~~ 192 (289)
||.+++. .+++++++++..+. +.|+ |+|+=+.. .+.+++++ +++..+..++-++||++..
T Consensus 226 Lha~d~e~r~~l~pv~~~~~l~~ll~~l~~y~~~~~~~i~ieyvLI~GvNDs~e~a~~La~llk~l~~~VnLIPyn~~~~ 305 (356)
T PRK14462 226 LHAVDDELRSELMPINKAYNIESIIDAVRKFPIDQRKRVMFEYLVIKDVNDDLKSAKKLVKLLNGIKAKVNLILFNPHEG 305 (356)
T ss_pred CCCCCHHHHHHhCCCCccCCHHHHHHHHHHHHHHhCCeEEEEEEEECCCCCCHHHHHHHHHHHhhcCcEEEEEeCCCCCC
Confidence 8998653 23467788787554 5554 67775543 34555444 4444556788899998753
Q ss_pred c----hh----hhhHHHHHHhCCeEEEcccCcccc
Q 022968 193 E----IE----DDIIPLCRELGIGIVAYSPLGRGF 219 (289)
Q Consensus 193 ~----~~----~~~~~~~~~~gi~v~a~~pl~~G~ 219 (289)
. +. ..+.+..+++|+.+..+...+..+
T Consensus 306 ~~~~~ps~e~i~~f~~~l~~~gi~vtvR~~~G~dI 340 (356)
T PRK14462 306 SKFERPSLEDMIKFQDYLNSKGLLCTIRESKGLDI 340 (356)
T ss_pred CCCCCCCHHHHHHHHHHHHHCCCcEEEeCCCCCch
Confidence 1 11 345666778899999988877654
No 91
>PRK15072 bifunctional D-altronate/D-mannonate dehydratase; Provisional
Probab=55.80 E-value=1.3e+02 Score=27.87 Aligned_cols=83 Identities=7% Similarity=0.015 Sum_probs=60.1
Q ss_pred ccEEeecCCCCCCCHHHHHHHHHHHHHcCccc-eeecCCCCHHHHHHHHccCCceEEeccCCCCCcc-hhhhhHHHHHHh
Q 022968 128 IDLYYQHRVDTSVSIEDTMGELKKLVEEGKIK-YIGLSEASADTIRRAHAVHPITAVQMEYSLWTRE-IEDDIIPLCREL 205 (289)
Q Consensus 128 iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir-~iGvs~~~~~~l~~~~~~~~~~~~q~~~~~~~~~-~~~~~~~~~~~~ 205 (289)
.++.++..|-+. +.++.+.+|++.-.+. ..|=|-++...+..+++...++++|+...-.-.- .-.++.++|+.+
T Consensus 232 ~~l~~iEeP~~~----~d~~~~~~L~~~~~iPIa~dEs~~~~~~~~~li~~~a~dii~~d~~~~GGit~~~kia~lA~~~ 307 (404)
T PRK15072 232 YRLFWLEDPTPA----ENQEAFRLIRQHTTTPLAVGEVFNSIWDCKQLIEEQLIDYIRTTVTHAGGITHLRRIADFAALY 307 (404)
T ss_pred cCCcEEECCCCc----cCHHHHHHHHhcCCCCEEeCcCccCHHHHHHHHHcCCCCEEecCccccCcHHHHHHHHHHHHHc
Confidence 456666655432 2367788888876665 5566778899999999988899999877764321 126789999999
Q ss_pred CCeEEEccc
Q 022968 206 GIGIVAYSP 214 (289)
Q Consensus 206 gi~v~a~~p 214 (289)
|+.++..+.
T Consensus 308 gi~~~~h~~ 316 (404)
T PRK15072 308 QVRTGSHGP 316 (404)
T ss_pred CCceeeccC
Confidence 999987544
No 92
>KOG0259 consensus Tyrosine aminotransferase [Amino acid transport and metabolism]
Probab=55.10 E-value=1.8e+02 Score=27.03 Aligned_cols=153 Identities=15% Similarity=0.200 Sum_probs=81.0
Q ss_pred CCHHHHHHHHHHHHHcCCCeEeCCcCcCCC-C--hhHHHHHHHHhc-----CCCCCEEEEecccccccCCcccCCCCCHH
Q 022968 39 LSHEVGCSIIKETFNRGITLFDTSDVYGVD-H--DNEIMVGKALKQ-----LPRDKIQLATKFGCFMLDGVSIGVKGSPE 110 (289)
Q Consensus 39 ~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~~-g--~se~~lg~~l~~-----~~R~~~~I~tK~~~~~~~~~~~~~~~~~~ 110 (289)
....++.+++..|+++|- .+.|+.. | .+.+.+.+.+.. ...+|+|+++-+.
T Consensus 78 ~ts~~a~~Av~~al~Sgk-----~N~Yaps~G~~~AR~AVAeYl~~~l~~kl~a~DV~ltsGC~---------------- 136 (447)
T KOG0259|consen 78 RTSQEAEQAVVDALRSGK-----GNGYAPSVGILPARRAVAEYLNRDLPNKLTADDVVLTSGCS---------------- 136 (447)
T ss_pred cCCHHHHHHHHHHHhcCC-----CCCcCCccccHHHHHHHHHHhhcCCCCccCcCceEEeccch----------------
Confidence 455778888999998874 3366641 1 267777777654 4688999988642
Q ss_pred HHHHHHHHHHHHcCCCcccEEeecCCCCCCCHHHHHHHHHHHHHcCccceeecC---CC--CHHHHHHHHccCCce-EEe
Q 022968 111 YVRKCCEASLKRLDVDYIDLYYQHRVDTSVSIEDTMGELKKLVEEGKIKYIGLS---EA--SADTIRRAHAVHPIT-AVQ 184 (289)
Q Consensus 111 ~i~~~~~~sL~~L~~~~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~iGvs---~~--~~~~l~~~~~~~~~~-~~q 184 (289)
.++|-.+..|--....+++ -+|. .++-++..... .=.||++-+= +| +.+.++.+++...+. ++-
T Consensus 137 ---qAIe~~i~~LA~p~aNILl-PrPG--fp~Y~~~a~~~----~lEVR~ydlLPe~~weIDL~~veal~DENT~Aivvi 206 (447)
T KOG0259|consen 137 ---QAIELAISSLANPGANILL-PRPG--FPLYDTRAIYS----GLEVRYYDLLPEKDWEIDLDGVEALADENTVAIVVI 206 (447)
T ss_pred ---HHHHHHHHHhcCCCCceec-CCCC--CchHHHhhhhc----CceeEeecccCcccceechHHHHHhhccCeeEEEEe
Confidence 2334344444433344443 2222 22222211111 1124444442 12 234555555543332 234
Q ss_pred ccCCCCCc----chhhhhHHHHHHhCCeEEEcccCccccCCC
Q 022968 185 MEYSLWTR----EIEDDIIPLCRELGIGIVAYSPLGRGFFAG 222 (289)
Q Consensus 185 ~~~~~~~~----~~~~~~~~~~~~~gi~v~a~~pl~~G~L~~ 222 (289)
++-|+.-. +-.+++.+.|+++||-||+=.....-.+.+
T Consensus 207 NP~NPcGnVys~~HL~kiae~A~klgi~vIaDEVY~~~vfg~ 248 (447)
T KOG0259|consen 207 NPNNPCGNVYSEDHLKKIAETAKKLGIMVIADEVYGHTVFGD 248 (447)
T ss_pred CCCCCCcccccHHHHHHHHHHHHHhCCeEEehhhcceeecCC
Confidence 45555322 222788999999999998766555444433
No 93
>PLN02522 ATP citrate (pro-S)-lyase
Probab=54.24 E-value=18 Score=35.47 Aligned_cols=34 Identities=29% Similarity=0.155 Sum_probs=25.9
Q ss_pred CcCC-CChhHHHHHHHHhcCCCCCEEEEecccccc
Q 022968 64 VYGV-DHDNEIMVGKALKQLPRDKIQLATKFGCFM 97 (289)
Q Consensus 64 ~Yg~-~g~se~~lg~~l~~~~R~~~~I~tK~~~~~ 97 (289)
.|+. ++..|+.+-+++++..+.+-+|+-|.|...
T Consensus 228 lygEiGg~~e~~f~ea~~~a~~~KPVVa~kaGrsa 262 (608)
T PLN02522 228 VLGELGGRDEYSLVEALKQGKVSKPVVAWVSGTCA 262 (608)
T ss_pred EEEecCchhHHHHHHHHHHhcCCCCEEEEeccCCC
Confidence 3443 467888888999875578889999988765
No 94
>TIGR02534 mucon_cyclo muconate and chloromuconate cycloisomerases. This model encompasses muconate cycloisomerase (EC 5.5.1.1) and chloromuconate cycloisomerase (EC 5.5.1.7), enzymes that often overlap in specificity. It excludes more distantly related proteins such as mandelate racemase (5.1.2.2).
Probab=54.01 E-value=1.7e+02 Score=26.60 Aligned_cols=154 Identities=8% Similarity=0.009 Sum_probs=87.2
Q ss_pred HHHHHHHHH-HcCCCeEeCCcCcCCCChhHHHHHHHHhcCCCCCEEEEecccccccCCcccCCCCCHHHHHHHHHHHHHH
Q 022968 44 GCSIIKETF-NRGITLFDTSDVYGVDHDNEIMVGKALKQLPRDKIQLATKFGCFMLDGVSIGVKGSPEYVRKCCEASLKR 122 (289)
Q Consensus 44 ~~~~l~~A~-~~Gi~~~DtA~~Yg~~g~se~~lg~~l~~~~R~~~~I~tK~~~~~~~~~~~~~~~~~~~i~~~~~~sL~~ 122 (289)
..+-+..++ +.|++.|=.--.-.+ ...+...=+++++.-.+++.|.-=.. ..++.+...+-+ +.|+.
T Consensus 145 ~~~~~~~~~~~~Gf~~~KiKvg~~~-~~~d~~~v~~~re~~g~~~~l~~DaN----------~~~~~~~A~~~~-~~l~~ 212 (368)
T TIGR02534 145 DIAEAEERIEEKRHRSFKLKIGARD-PADDVAHVVAIAKALGDRASVRVDVN----------AAWDERTALHYL-PQLAD 212 (368)
T ss_pred HHHHHHHHHHhcCcceEEEEeCCCC-cHHHHHHHHHHHHhcCCCcEEEEECC----------CCCCHHHHHHHH-HHHHh
Confidence 344455555 479998853210000 11222233445542233444432221 124554433322 33343
Q ss_pred cCCCcccEEeecCCCCCCCHHHHHHHHHHHHHcCccc-eeecCCCCHHHHHHHHccCCceEEeccCCCCCcc-hhhhhHH
Q 022968 123 LDVDYIDLYYQHRVDTSVSIEDTMGELKKLVEEGKIK-YIGLSEASADTIRRAHAVHPITAVQMEYSLWTRE-IEDDIIP 200 (289)
Q Consensus 123 L~~~~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir-~iGvs~~~~~~l~~~~~~~~~~~~q~~~~~~~~~-~~~~~~~ 200 (289)
+ ++.++..|-+. +.++.+.+|++...+. ..|=|-++...+..++....++++|+.....-.- .-..+..
T Consensus 213 ~-----~~~~iEeP~~~----~d~~~~~~l~~~~~~pia~dE~~~~~~~~~~~~~~~~~d~~~~d~~~~GGi~~~~~i~~ 283 (368)
T TIGR02534 213 A-----GVELIEQPTPA----ENREALARLTRRFNVPIMADESVTGPADALAIAKASAADVFALKTTKSGGLLESKKIAA 283 (368)
T ss_pred c-----ChhheECCCCc----ccHHHHHHHHHhCCCCEEeCcccCCHHHHHHHHHhCCCCEEEEcccccCCHHHHHHHHH
Confidence 3 45556655432 2367777888876665 6677788888998988888889999877764321 1267899
Q ss_pred HHHHhCCeEEEcccCccc
Q 022968 201 LCRELGIGIVAYSPLGRG 218 (289)
Q Consensus 201 ~~~~~gi~v~a~~pl~~G 218 (289)
.|+.+|+.++..+.+.++
T Consensus 284 lA~~~gi~~~~~~~~~s~ 301 (368)
T TIGR02534 284 IAEAAGIALYGGTMLEGP 301 (368)
T ss_pred HHHHcCCceeeecchhhH
Confidence 999999998765444433
No 95
>PRK00507 deoxyribose-phosphate aldolase; Provisional
Probab=53.99 E-value=81 Score=26.73 Aligned_cols=43 Identities=14% Similarity=0.048 Sum_probs=33.6
Q ss_pred CCHHHHHHHHHHHHHcCCCeEeCCcCcCCCChhHHHHHHHHhc
Q 022968 39 LSHEVGCSIIKETFNRGITLFDTSDVYGVDHDNEIMVGKALKQ 81 (289)
Q Consensus 39 ~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~~g~se~~lg~~l~~ 81 (289)
+++++..++.+.+.+.|..|+=|+..|+.+|.+.+.+....+.
T Consensus 133 L~~e~i~~a~~~~~~agadfIKTsTG~~~~gat~~~v~~m~~~ 175 (221)
T PRK00507 133 LTDEEKVKACEIAKEAGADFVKTSTGFSTGGATVEDVKLMRET 175 (221)
T ss_pred CCHHHHHHHHHHHHHhCCCEEEcCCCCCCCCCCHHHHHHHHHH
Confidence 4678889999999999999999999986546666666554443
No 96
>cd03327 MR_like_2 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 2. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown.
Probab=53.99 E-value=1.7e+02 Score=26.41 Aligned_cols=154 Identities=14% Similarity=0.121 Sum_probs=89.2
Q ss_pred CHHHHHHHHHHHHHcCCCeEeCCcCcCC-CC----hhHHHHHHHHhcCCCCCEEEEecccccccCCcccCCCCCHHHHHH
Q 022968 40 SHEVGCSIIKETFNRGITLFDTSDVYGV-DH----DNEIMVGKALKQLPRDKIQLATKFGCFMLDGVSIGVKGSPEYVRK 114 (289)
Q Consensus 40 ~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~-~g----~se~~lg~~l~~~~R~~~~I~tK~~~~~~~~~~~~~~~~~~~i~~ 114 (289)
+.++..+.++.+++.|++.|=.--..+. .+ ..+...=+++++.-.+++-|.-=.. ..++.+...
T Consensus 120 ~~~~~~~~a~~~~~~Gf~~~Kikvg~~~~~~~~~~~~d~~~v~avr~~~g~~~~l~vDan----------~~~~~~~A~- 188 (341)
T cd03327 120 DLDELPDEAKEYLKEGYRGMKMRFGYGPSDGHAGLRKNVELVRAIREAVGYDVDLMLDCY----------MSWNLNYAI- 188 (341)
T ss_pred CHHHHHHHHHHHHHcCCCEEEECCCCCCCcchHHHHHHHHHHHHHHHHhCCCCcEEEECC----------CCCCHHHHH-
Confidence 5566777888889999998753211110 01 0111222334432122333322211 124544433
Q ss_pred HHHHHHHHcCCCcccEEeecCCCCCCCHHHHHHHHHHHHHcCccc-eeecCCCCHHHHHHHHccCCceEEeccCCCCCcc
Q 022968 115 CCEASLKRLDVDYIDLYYQHRVDTSVSIEDTMGELKKLVEEGKIK-YIGLSEASADTIRRAHAVHPITAVQMEYSLWTRE 193 (289)
Q Consensus 115 ~~~~sL~~L~~~~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir-~iGvs~~~~~~l~~~~~~~~~~~~q~~~~~~~~~ 193 (289)
+.+++|. ..++.++..|-+. +.++.+..|++...|. ..|=|.++...+.++++...++++|...+..-.-
T Consensus 189 ---~~~~~l~--~~~~~~iEeP~~~----~d~~~~~~l~~~~~~pIa~gE~~~~~~~~~~~i~~~a~d~i~~d~~~~GGi 259 (341)
T cd03327 189 ---KMARALE--KYELRWIEEPLIP----DDIEGYAELKKATGIPISTGEHEYTVYGFKRLLEGRAVDILQPDVNWVGGI 259 (341)
T ss_pred ---HHHHHhh--hcCCccccCCCCc----cCHHHHHHHHhcCCCCeEeccCccCHHHHHHHHHcCCCCEEecCccccCCH
Confidence 2333332 2355556555432 2367778888887666 5555778889999999888899999987765321
Q ss_pred -hhhhhHHHHHHhCCeEEEcc
Q 022968 194 -IEDDIIPLCRELGIGIVAYS 213 (289)
Q Consensus 194 -~~~~~~~~~~~~gi~v~a~~ 213 (289)
.-.++.+.|+.+|+.++..+
T Consensus 260 t~~~~i~~~A~~~g~~~~~h~ 280 (341)
T cd03327 260 TELKKIAALAEAYGVPVVPHA 280 (341)
T ss_pred HHHHHHHHHHHHcCCeecccc
Confidence 22689999999999987653
No 97
>PRK13803 bifunctional phosphoribosylanthranilate isomerase/tryptophan synthase subunit beta; Provisional
Probab=53.92 E-value=78 Score=31.30 Aligned_cols=68 Identities=16% Similarity=0.172 Sum_probs=46.3
Q ss_pred HHcCCCcccEEeecCCCCCCCHHHHHHHHHHHHHcCccceeecC-CCCHHHHHHHHccCCceEEeccCC
Q 022968 121 KRLDVDYIDLYYQHRVDTSVSIEDTMGELKKLVEEGKIKYIGLS-EASADTIRRAHAVHPITAVQMEYS 188 (289)
Q Consensus 121 ~~L~~~~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~iGvs-~~~~~~l~~~~~~~~~~~~q~~~~ 188 (289)
..+|.|++=+.+..........+.....+.+......+..+||- |-+.+.+.++.+...++++|+.-+
T Consensus 20 ~~~gaD~iGfIf~~~SpR~V~~~~~a~~i~~~l~~~~v~~VgVfv~~~~~~i~~~~~~~~ld~vQLHG~ 88 (610)
T PRK13803 20 VDMLPDFIGFIFYEKSPRFVGNKFLAPNLEKAIRKAGGRPVGVFVNESAKAMLKFSKKNGIDFVQLHGA 88 (610)
T ss_pred HHcCCCEEEEEecCCCCCCCCHHHHHHHHHHhCCCCCCCEEEEEeCCCHHHHHHHHHhcCCCEEEECCC
Confidence 45999999987555433334444413333333333357889995 788999999988899999999643
No 98
>COG2069 CdhD CO dehydrogenase/acetyl-CoA synthase delta subunit (corrinoid Fe-S protein) [Energy production and conversion]
Probab=53.91 E-value=1.6e+02 Score=26.23 Aligned_cols=96 Identities=13% Similarity=0.221 Sum_probs=63.8
Q ss_pred HHHHHcCCCcccEEeecCCCC-----CCCHHHHHHHHHHHHHcCccce-eecCCC---CHHHHHHHHccCCc-eEEeccC
Q 022968 118 ASLKRLDVDYIDLYYQHRVDT-----SVSIEDTMGELKKLVEEGKIKY-IGLSEA---SADTIRRAHAVHPI-TAVQMEY 187 (289)
Q Consensus 118 ~sL~~L~~~~iDl~~lh~~~~-----~~~~~~~~~~l~~l~~~G~ir~-iGvs~~---~~~~l~~~~~~~~~-~~~q~~~ 187 (289)
+..++.| .|++.+|-... +.+..|+.+.||++.+.=+|-- ||=|.. +++.++++.+...- -+.--.-
T Consensus 158 k~Vk~fg---admvTiHlIsTdPki~D~p~~EAak~lEdvLqAVdvPiiiGGSGnpeKDpeVlekaAEvaEGeRclLaSa 234 (403)
T COG2069 158 KCVKKFG---ADMVTIHLISTDPKIKDTPAKEAAKTLEDVLQAVDVPIIIGGSGNPEKDPEVLEKAAEVAEGERCLLASA 234 (403)
T ss_pred HHHHHhC---CceEEEEeecCCccccCCCHHHHHHHHHHHHHhcCcCEEecCCCCCccCHHHHHHHHHhhcCceEEeecc
Confidence 3445666 57777886532 3567899999999999877654 466654 56778877665221 1222233
Q ss_pred CCCCcchhhhhHHHHHHhCCeEEEcccCccc
Q 022968 188 SLWTREIEDDIIPLCRELGIGIVAYSPLGRG 218 (289)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~gi~v~a~~pl~~G 218 (289)
|+ +.+. +.+.+.|.++|=.|++|+++.-.
T Consensus 235 nl-dlDy-~~ia~AA~ky~H~VLswt~~D~N 263 (403)
T COG2069 235 NL-DLDY-ERIAEAALKYDHVVLSWTQMDVN 263 (403)
T ss_pred cc-ccCH-HHHHHHHHhcCceEEEeeccChH
Confidence 33 2222 57899999999999999988643
No 99
>PRK09061 D-glutamate deacylase; Validated
Probab=53.88 E-value=1.2e+02 Score=29.09 Aligned_cols=116 Identities=9% Similarity=0.017 Sum_probs=65.8
Q ss_pred HHHHHHHHHHHcCCCeEeCCcCcCCCChhHHHHHHHHhcCCCCCEEEEecccccccCCcccCCCCCHHHHHHHHHHHHHH
Q 022968 43 VGCSIIKETFNRGITLFDTSDVYGVDHDNEIMVGKALKQLPRDKIQLATKFGCFMLDGVSIGVKGSPEYVRKCCEASLKR 122 (289)
Q Consensus 43 ~~~~~l~~A~~~Gi~~~DtA~~Yg~~g~se~~lg~~l~~~~R~~~~I~tK~~~~~~~~~~~~~~~~~~~i~~~~~~sL~~ 122 (289)
+..++++.|++.|+..|=+...|-. +.+...+-+.++...+-+..|......... .......+.+.+.++.+. .
T Consensus 170 ~m~~ll~~al~~Ga~gis~~~~y~p-~~~~~eL~~l~~~A~~~g~~v~~H~e~~~~----~~~~~e~~av~~~i~lA~-~ 243 (509)
T PRK09061 170 EILELLEQGLDEGALGIGIGAGYAP-GTGHKEYLELARLAARAGVPTYTHVRYLSN----VDPRSSVDAYQELIAAAA-E 243 (509)
T ss_pred HHHHHHHHHHHCCCCEEecCCccCC-CCCHHHHHHHHHHHHHcCCEEEEEecCccc----CCchhHHHHHHHHHHHHH-H
Confidence 3678888999999999987666643 445555666666544456677766532210 000011223333333222 3
Q ss_pred cCCCcccEEeecCCCC-CCCHHHHHHHHHHHHHcCccceeecCCCC
Q 022968 123 LDVDYIDLYYQHRVDT-SVSIEDTMGELKKLVEEGKIKYIGLSEAS 167 (289)
Q Consensus 123 L~~~~iDl~~lh~~~~-~~~~~~~~~~l~~l~~~G~ir~iGvs~~~ 167 (289)
.| .-+.+.|-... .....+.++.+++++++|.--..-++.|.
T Consensus 244 ~G---~rv~IsHlss~g~~~~~~~le~I~~Ar~~Gi~Vt~e~~P~~ 286 (509)
T PRK09061 244 TG---AHMHICHVNSTSLRDIDRCLALVEKAQAQGLDVTTEAYPYG 286 (509)
T ss_pred hC---CCEEEEeeccCCcccHHHHHHHHHHHHHcCCcEEEEecCcc
Confidence 44 34666776532 23456788999999999854444444333
No 100
>PRK14459 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=53.67 E-value=85 Score=28.95 Aligned_cols=89 Identities=10% Similarity=0.140 Sum_probs=59.7
Q ss_pred EeecCCCCC-----------CCHHHHHHHHHHHH-HcCc---cceeecCC--CCHH---HHHHHHccC---CceEEeccC
Q 022968 131 YYQHRVDTS-----------VSIEDTMGELKKLV-EEGK---IKYIGLSE--ASAD---TIRRAHAVH---PITAVQMEY 187 (289)
Q Consensus 131 ~~lh~~~~~-----------~~~~~~~~~l~~l~-~~G~---ir~iGvs~--~~~~---~l~~~~~~~---~~~~~q~~~ 187 (289)
+-||.+++. .+++++++++.++. +.|+ |+|+=+.+ .+.+ .|.++++.. +..++-++|
T Consensus 242 vSLha~d~e~R~~l~p~n~~~~l~~ll~a~~~~~~~~grrv~ieyvLi~GvNDs~e~a~~L~~llk~~~~~~~~VNLIpy 321 (373)
T PRK14459 242 VSLHAPDDELRDELVPVNTRWKVDEVLDAARYYADATGRRVSIEYALIRDINDQPWRADLLGKKLHGRGGGWVHVNLIPL 321 (373)
T ss_pred EEeCCCCHHHHHHhcCcccCCCHHHHHHHHHHHHHHhCCEEEEEEEEeCCCCCCHHHHHHHHHHHhhccCCCeEEEEEcc
Confidence 558988653 34678888877776 4465 56664443 3333 355555554 567889999
Q ss_pred CCCCcc----h----hhhhHHHHHHhCCeEEEcccCcccc
Q 022968 188 SLWTRE----I----EDDIIPLCRELGIGIVAYSPLGRGF 219 (289)
Q Consensus 188 ~~~~~~----~----~~~~~~~~~~~gi~v~a~~pl~~G~ 219 (289)
|+.... . -..+.+..+++||.+..+...+..+
T Consensus 322 Np~~~~~y~~~~~~~~~~F~~~L~~~gi~~tiR~~~G~dI 361 (373)
T PRK14459 322 NPTPGSKWTASPPEVEREFVRRLRAAGVPCTVRDTRGQEI 361 (373)
T ss_pred CCCCCCCCcCCCHHHHHHHHHHHHHCCCeEEeeCCCCcCH
Confidence 996531 1 1457778889999999988887654
No 101
>TIGR01290 nifB nitrogenase cofactor biosynthesis protein NifB. This model describes NifB, a protein required for the biosynthesis of the iron-molybdenum (or iron-vanadium) cofactor used by the nitrogen-fixing enzyme nitrogenase. Archaeal homologs lack the most C-terminal region and score between the trusted and noise cutoffs of this model.
Probab=53.13 E-value=2e+02 Score=27.12 Aligned_cols=112 Identities=14% Similarity=0.077 Sum_probs=69.7
Q ss_pred CCCCHHHHHHHHHHHHHHcCCCcccEEeecCC-CCCCCHHHHHHHHHHHHHcCccceeecCCCC---HHHHHHHHccCCc
Q 022968 105 VKGSPEYVRKCCEASLKRLDVDYIDLYYQHRV-DTSVSIEDTMGELKKLVEEGKIKYIGLSEAS---ADTIRRAHAVHPI 180 (289)
Q Consensus 105 ~~~~~~~i~~~~~~sL~~L~~~~iDl~~lh~~-~~~~~~~~~~~~l~~l~~~G~ir~iGvs~~~---~~~l~~~~~~~~~ 180 (289)
...+++.+.+.+++..+.+. .++.+-+-.| ++....+.+++.+..++++..=..+.+++.. ++.++++.+. .+
T Consensus 58 ~~Ltpee~~~~i~~v~~~~~--~~~~V~iaG~GEPLl~~e~~~~~l~~~~~~~~~i~i~lsTNG~~l~e~i~~L~~~-gv 134 (442)
T TIGR01290 58 ELLTPEQALRKARQVAAEIP--QLSVVGIAGPGDPLANIGKTFQTLELVARQLPDVKLCLSTNGLMLPEHVDRLVDL-GV 134 (442)
T ss_pred ccCCHHHHHHHHHHHHHhcC--CCCEEEEecCCCcccCccccHHHHHHHHHhcCCCeEEEECCCCCCHHHHHHHHHC-CC
Confidence 34788899888888877652 3566666664 3444446688899999988311257777654 5667776654 24
Q ss_pred eEEeccCCCCCcchh---------------------------hhhHHHHHHhCCeEEEcccCcccc
Q 022968 181 TAVQMEYSLWTREIE---------------------------DDIIPLCRELGIGIVAYSPLGRGF 219 (289)
Q Consensus 181 ~~~q~~~~~~~~~~~---------------------------~~~~~~~~~~gi~v~a~~pl~~G~ 219 (289)
+.+.+.++-.+.... .+-++.+.+.|+.+....++-.|+
T Consensus 135 d~V~islka~d~e~~~~Iy~~v~~~g~~~tG~~~~~il~e~~l~~l~~l~~~G~~v~v~~vlIpGi 200 (442)
T TIGR01290 135 GHVTITINAIDPAVGEKIYPWVWYEGERYTGREAADLLIERQLEGLEKLTERGILVKVNSVLIPGI 200 (442)
T ss_pred CeEEEeccCCCHHHHhhcchhhccccccccCcchHHHHHHHHHHHHHHHHhCCCeEEEEEEeeCCc
Confidence 455555554332110 123556777888887777776664
No 102
>cd00405 PRAI Phosphoribosylanthranilate isomerase (PRAI) catalyzes the fourth step of the tryptophan biosynthesis, the conversion of N-(5'- phosphoribosyl)-anthranilate (PRA) to 1-(o-carboxyphenylamino)- 1-deoxyribulose 5-phosphate (CdRP). Most PRAIs are monomeric, monofunctional and thermolabile, but in some thermophile organisms PRAI is dimeric for reasons of stability and in others it is fused to other components of the tryptophan biosynthesis pathway to form multifunctional enzymes.
Probab=52.26 E-value=75 Score=26.21 Aligned_cols=41 Identities=15% Similarity=0.100 Sum_probs=26.2
Q ss_pred cccEEeecCCCCCCCHHHHHHHHHHHHHcCccceeecCCCCHHHH
Q 022968 127 YIDLYYQHRVDTSVSIEDTMGELKKLVEEGKIKYIGLSEASADTI 171 (289)
Q Consensus 127 ~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~iGvs~~~~~~l 171 (289)
.+|.+|||..++ . +..+.+.+......++.+|+++....++
T Consensus 73 ~~d~Vqlhg~e~---~-~~~~~l~~~~~~~~i~~i~~~~~~~~~~ 113 (203)
T cd00405 73 GLDVVQLHGDES---P-EYCAQLRARLGLPVIKAIRVKDEEDLEK 113 (203)
T ss_pred CCCEEEECCCCC---H-HHHHHHHhhcCCcEEEEEecCChhhHHH
Confidence 478999998652 1 2333343333356799999998766554
No 103
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=51.86 E-value=1.9e+02 Score=26.27 Aligned_cols=103 Identities=18% Similarity=0.188 Sum_probs=57.6
Q ss_pred CCCCHHHHHHHHHHHHHHcCCCcccEEeecC--------CCCCCCHHHHHHHHHHHHHc-CccceeecCC---CCHHHHH
Q 022968 105 VKGSPEYVRKCCEASLKRLDVDYIDLYYQHR--------VDTSVSIEDTMGELKKLVEE-GKIKYIGLSE---ASADTIR 172 (289)
Q Consensus 105 ~~~~~~~i~~~~~~sL~~L~~~~iDl~~lh~--------~~~~~~~~~~~~~l~~l~~~-G~ir~iGvs~---~~~~~l~ 172 (289)
+.++.+.+.+-+ +.|.+.|+++|.+-..-. -....+ .++.++.+++. ...+...+.. .+.+.++
T Consensus 20 ~~f~~~~~~~i~-~~L~~aGv~~IEvg~~~g~g~~s~~~g~~~~~---~~e~i~~~~~~~~~~~~~~ll~pg~~~~~dl~ 95 (337)
T PRK08195 20 HQYTLEQVRAIA-RALDAAGVPVIEVTHGDGLGGSSFNYGFGAHT---DEEYIEAAAEVVKQAKIAALLLPGIGTVDDLK 95 (337)
T ss_pred CccCHHHHHHHH-HHHHHcCCCEEEeecCCCCCCccccCCCCCCC---HHHHHHHHHHhCCCCEEEEEeccCcccHHHHH
Confidence 345666665555 569999999999853211 011122 24444444332 2345444332 2456777
Q ss_pred HHHccCCceEEeccCCCCCcchhhhhHHHHHHhCCeEEEc
Q 022968 173 RAHAVHPITAVQMEYSLWTREIEDDIIPLCRELGIGIVAY 212 (289)
Q Consensus 173 ~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~gi~v~a~ 212 (289)
.+.+. .++.+.+.++.-..+...+.+++++++|..+...
T Consensus 96 ~a~~~-gvd~iri~~~~~e~~~~~~~i~~ak~~G~~v~~~ 134 (337)
T PRK08195 96 MAYDA-GVRVVRVATHCTEADVSEQHIGLARELGMDTVGF 134 (337)
T ss_pred HHHHc-CCCEEEEEEecchHHHHHHHHHHHHHCCCeEEEE
Confidence 76664 4455555444333233367889999999877654
No 104
>PRK13796 GTPase YqeH; Provisional
Probab=51.47 E-value=1.9e+02 Score=26.40 Aligned_cols=120 Identities=12% Similarity=0.140 Sum_probs=78.2
Q ss_pred CCHHHHHHHHHHHHHcC---CCeEeCCcCcCCCChhHHHHHHHHhcCCCCCEEEEecccccccCCcccCCCCCHHHHHHH
Q 022968 39 LSHEVGCSIIKETFNRG---ITLFDTSDVYGVDHDNEIMVGKALKQLPRDKIQLATKFGCFMLDGVSIGVKGSPEYVRKC 115 (289)
Q Consensus 39 ~~~~~~~~~l~~A~~~G---i~~~DtA~~Yg~~g~se~~lg~~l~~~~R~~~~I~tK~~~~~~~~~~~~~~~~~~~i~~~ 115 (289)
++.++..++++..-+.- +-.+|..+.-+. -...+.+.+. .+.-++|.+|.-.... ....+.+.+-
T Consensus 54 ~~~~~~~~~l~~i~~~~~lIv~VVD~~D~~~s---~~~~L~~~~~--~kpviLViNK~DLl~~-------~~~~~~i~~~ 121 (365)
T PRK13796 54 LTDDDFLKLLNGIGDSDALVVNVVDIFDFNGS---WIPGLHRFVG--NNPVLLVGNKADLLPK-------SVKKNKVKNW 121 (365)
T ss_pred CCHHHHHHHHHhhcccCcEEEEEEECccCCCc---hhHHHHHHhC--CCCEEEEEEchhhCCC-------ccCHHHHHHH
Confidence 56667777777776555 345776654432 2334444443 5567889999754321 2245566666
Q ss_pred HHHHHHHcCCCcccEEeecCCCCCCCHHHHHHHHHHHHHcCccceeecCCCCHHHH
Q 022968 116 CEASLKRLDVDYIDLYYQHRVDTSVSIEDTMGELKKLVEEGKIKYIGLSEASADTI 171 (289)
Q Consensus 116 ~~~sL~~L~~~~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~iGvs~~~~~~l 171 (289)
++...+.+|....|++++..-. ...++++++.+.++.+.+.+--+|.+|..-.-|
T Consensus 122 l~~~~k~~g~~~~~v~~vSAk~-g~gI~eL~~~I~~~~~~~~v~vvG~~NvGKSTL 176 (365)
T PRK13796 122 LRQEAKELGLRPVDVVLISAQK-GHGIDELLEAIEKYREGRDVYVVGVTNVGKSTL 176 (365)
T ss_pred HHHHHHhcCCCcCcEEEEECCC-CCCHHHHHHHHHHhcCCCeEEEEcCCCCcHHHH
Confidence 6666677776555777775543 346788888888887788899999999976543
No 105
>TIGR00538 hemN oxygen-independent coproporphyrinogen III oxidase. This model represents HemN, the oxygen-independent coproporphyrinogen III oxidase that replaces HemF function under anaerobic conditions. Several species, including E. coli, Helicobacter pylori, and Aquifex aeolicus, have both a member of this family and a member of another, closely related family for which there is no evidence of coproporphyrinogen III oxidase activity. Members of this family have a perfectly conserved motif PYRT[SC]YP in a region N-terminal to the region of homology with the related uncharacterized protein.
Probab=51.41 E-value=65 Score=30.45 Aligned_cols=60 Identities=20% Similarity=0.314 Sum_probs=38.0
Q ss_pred CCHHHHHHHHHHHHHHcCCCcccEEee-cCCC----------CCCC-HHH---HH-HHHHHHHHcCccceeecCCCCH
Q 022968 107 GSPEYVRKCCEASLKRLDVDYIDLYYQ-HRVD----------TSVS-IED---TM-GELKKLVEEGKIKYIGLSEASA 168 (289)
Q Consensus 107 ~~~~~i~~~~~~sL~~L~~~~iDl~~l-h~~~----------~~~~-~~~---~~-~~l~~l~~~G~ir~iGvs~~~~ 168 (289)
.+.+.+.+.++..++ |+.+++.+|.+ +.|. ...+ .++ .+ .+.+.|.+.|. ..+++++|..
T Consensus 215 qt~e~~~~tl~~~~~-l~~~~is~y~L~~~p~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~L~~~Gy-~~~~~~~fa~ 290 (455)
T TIGR00538 215 QTKESFAKTLEKVAE-LNPDRLAVFNYAHVPWVKPAQRKIPEAALPSAEEKLDILQETIAFLTEAGY-QFIGMDHFAK 290 (455)
T ss_pred CCHHHHHHHHHHHHh-cCCCEEEEecCccccchhHHHhcccccCCCCHHHHHHHHHHHHHHHHHCCC-EEEeccceeC
Confidence 477888888876555 99999999877 2221 0011 222 22 34456666776 6699999874
No 106
>TIGR01496 DHPS dihydropteroate synthase. This model represents dihydropteroate synthase, the enzyme that catalyzes the second to last step in folic acid biosynthesis. The gene is usually designated folP (folic acid biosynthsis) or sul (sulfanilamide resistance). This model represents one branch of the family of pterin-binding enzymes (pfam00809) and of a cluster of dihydropteroate synthase and related enzymes (COG0294). Other members of pfam00809 and COG0294 are represented by TIGR00284.
Probab=50.94 E-value=1.7e+02 Score=25.42 Aligned_cols=100 Identities=19% Similarity=0.167 Sum_probs=63.9
Q ss_pred CCHHHHHHHHHHHHHHcCCCcccEEe-ecCCCCC-CCHH-H---HHHHHHHHHHcCccceeecCCCCHHHHHHHHccCCc
Q 022968 107 GSPEYVRKCCEASLKRLDVDYIDLYY-QHRVDTS-VSIE-D---TMGELKKLVEEGKIKYIGLSEASADTIRRAHAVHPI 180 (289)
Q Consensus 107 ~~~~~i~~~~~~sL~~L~~~~iDl~~-lh~~~~~-~~~~-~---~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~~~~~~~ 180 (289)
.+++.+.+..++-+ .-|.++||+-- -.+|+.. .+.+ | +...++.+++.-.+ -+.+-+++++.++++++.+..
T Consensus 20 ~~~~~~~~~a~~~~-~~GA~iIDIG~~st~p~~~~i~~~~E~~rl~~~v~~~~~~~~~-plsiDT~~~~vi~~al~~G~~ 97 (257)
T TIGR01496 20 LSVDKAVAHAERML-EEGADIIDVGGESTRPGADRVSPEEELNRVVPVIKALRDQPDV-PISVDTYRAEVARAALEAGAD 97 (257)
T ss_pred CCHHHHHHHHHHHH-HCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCC-eEEEeCCCHHHHHHHHHcCCC
Confidence 46677777765554 46889999842 2234322 2223 2 45555666655222 378889999999999987554
Q ss_pred eEEeccCCCCCcchhhhhHHHHHHhCCeEEEcc
Q 022968 181 TAVQMEYSLWTREIEDDIIPLCRELGIGIVAYS 213 (289)
Q Consensus 181 ~~~q~~~~~~~~~~~~~~~~~~~~~gi~v~a~~ 213 (289)
-++-+.. .. ..++++.++++|..++.+.
T Consensus 98 iINsis~--~~---~~~~~~l~~~~~~~vV~m~ 125 (257)
T TIGR01496 98 IINDVSG--GQ---DPAMLEVAAEYGVPLVLMH 125 (257)
T ss_pred EEEECCC--CC---CchhHHHHHHcCCcEEEEe
Confidence 4444432 22 2578999999999999854
No 107
>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed
Probab=50.51 E-value=1.8e+02 Score=25.66 Aligned_cols=155 Identities=12% Similarity=0.063 Sum_probs=87.4
Q ss_pred CHHHHHHHHHHHHHcC-CCeEeC---CcCcCC----CChhHHHHHHHHhcCCC-CCEEEEecccccccCCcccCCCCCHH
Q 022968 40 SHEVGCSIIKETFNRG-ITLFDT---SDVYGV----DHDNEIMVGKALKQLPR-DKIQLATKFGCFMLDGVSIGVKGSPE 110 (289)
Q Consensus 40 ~~~~~~~~l~~A~~~G-i~~~Dt---A~~Yg~----~g~se~~lg~~l~~~~R-~~~~I~tK~~~~~~~~~~~~~~~~~~ 110 (289)
+.++..+..+.+-+.| +..||- +++... -+.+.+.+-+.++...+ -++-|..|+.... +
T Consensus 102 ~~~~~~~~a~~~~~aG~~D~iElN~~cP~~~~gg~~~~~~~~~~~eiv~~vr~~~~~pv~vKl~~~~------------~ 169 (301)
T PRK07259 102 TEEEYAEVAEKLSKAPNVDAIELNISCPNVKHGGMAFGTDPELAYEVVKAVKEVVKVPVIVKLTPNV------------T 169 (301)
T ss_pred CHHHHHHHHHHHhccCCcCEEEEECCCCCCCCCccccccCHHHHHHHHHHHHHhcCCCEEEEcCCCc------------h
Confidence 5677888888888898 999875 211110 02355666666665221 2577888886321 1
Q ss_pred HHHHHHHHHHHHcCCCcccEEe-ecCC--CCC--CC--------------HHHHHHHHHHHHHcCccceeecCCC-CHHH
Q 022968 111 YVRKCCEASLKRLDVDYIDLYY-QHRV--DTS--VS--------------IEDTMGELKKLVEEGKIKYIGLSEA-SADT 170 (289)
Q Consensus 111 ~i~~~~~~sL~~L~~~~iDl~~-lh~~--~~~--~~--------------~~~~~~~l~~l~~~G~ir~iGvs~~-~~~~ 170 (289)
.+. .+-+.|+..|.|.+++.- .+.. +.. .+ ..-.++.+.++++.=.+--||+... +.+.
T Consensus 170 ~~~-~~a~~l~~~G~d~i~~~nt~~g~~~~~~~~~~~~~~~~gg~sg~~~~p~~l~~v~~i~~~~~ipvi~~GGI~~~~d 248 (301)
T PRK07259 170 DIV-EIAKAAEEAGADGLSLINTLKGMAIDIKTRKPILANVTGGLSGPAIKPIALRMVYQVYQAVDIPIIGMGGISSAED 248 (301)
T ss_pred hHH-HHHHHHHHcCCCEEEEEccccccccccccCceeecCCcCccCCcCcccccHHHHHHHHHhCCCCEEEECCCCCHHH
Confidence 222 333557778877776531 1111 000 00 0114666677777656888888875 6788
Q ss_pred HHHHHccCCceEEeccCCCCC-cc----hhhhhHHHHHHhCCe
Q 022968 171 IRRAHAVHPITAVQMEYSLWT-RE----IEDDIIPLCRELGIG 208 (289)
Q Consensus 171 l~~~~~~~~~~~~q~~~~~~~-~~----~~~~~~~~~~~~gi~ 208 (289)
..+++... .+.+|+-=-++. .. ..+++-.++.++|..
T Consensus 249 a~~~l~aG-Ad~V~igr~ll~~P~~~~~i~~~l~~~~~~~g~~ 290 (301)
T PRK07259 249 AIEFIMAG-ASAVQVGTANFYDPYAFPKIIEGLEAYLDKYGIK 290 (301)
T ss_pred HHHHHHcC-CCceeEcHHHhcCcHHHHHHHHHHHHHHHHcCCC
Confidence 88877654 577776322222 11 225566677777653
No 108
>PRK00077 eno enolase; Provisional
Probab=49.79 E-value=2.3e+02 Score=26.64 Aligned_cols=96 Identities=11% Similarity=0.072 Sum_probs=63.9
Q ss_pred CCHHHHHHHHHHHHHHcCCCcccEEeecCCCCCCCHHHHHHHHHHHHHcC--ccceeecC--CCCHHHHHHHHccCCceE
Q 022968 107 GSPEYVRKCCEASLKRLDVDYIDLYYQHRVDTSVSIEDTMGELKKLVEEG--KIKYIGLS--EASADTIRRAHAVHPITA 182 (289)
Q Consensus 107 ~~~~~i~~~~~~sL~~L~~~~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G--~ir~iGvs--~~~~~~l~~~~~~~~~~~ 182 (289)
++++...+.+.+.++.+ ++.++-.|-+.. -|+.+.+|.+.- ++.-.|=- ..+++.+..+++....++
T Consensus 261 ~s~~e~~~~~~~l~e~y-----~i~~iEdPl~~~----D~~g~~~L~~~~~~~ipI~gdE~~~t~~~~~~~~i~~~a~d~ 331 (425)
T PRK00077 261 LTSEEMIDYLAELVDKY-----PIVSIEDGLDEN----DWEGWKLLTEKLGDKVQLVGDDLFVTNTKRLKKGIEKGAANS 331 (425)
T ss_pred CCHHHHHHHHHHHHhhC-----CcEEEEcCCCCc----cHHHHHHHHHhcCCCCeEEcCCCccCCHHHHHHHHHhCCCCE
Confidence 46666666666665553 566677665432 366666676663 45443333 236899999998888899
Q ss_pred EeccCCCCCcc-hhhhhHHHHHHhCCeEEE
Q 022968 183 VQMEYSLWTRE-IEDDIIPLCRELGIGIVA 211 (289)
Q Consensus 183 ~q~~~~~~~~~-~~~~~~~~~~~~gi~v~a 211 (289)
+|+..+-+-.- ...++..+|+.+|+.++.
T Consensus 332 v~ik~~~~GGitea~~ia~lA~~~gi~~~v 361 (425)
T PRK00077 332 ILIKVNQIGTLTETLDAIELAKRAGYTAVV 361 (425)
T ss_pred EEeCccccCCHHHHHHHHHHHHHcCCeEEE
Confidence 99988765432 226789999999998664
No 109
>TIGR00126 deoC deoxyribose-phosphate aldolase. Deoxyribose-phosphate aldolase is involved in the catabolism of nucleotides and deoxyriibonucleotides. The catalytic process is as follows: 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde. It is found in both gram-postive and gram-negative bacteria.
Probab=49.61 E-value=1.6e+02 Score=24.80 Aligned_cols=76 Identities=14% Similarity=0.052 Sum_probs=0.0
Q ss_pred CCHHHHHHHHHHHHHcCCCeEeCCcCcCCCChhHHHHHHHHhc-CCCCCEEEEecccccccCCcccCCCCCHHHHHHHHH
Q 022968 39 LSHEVGCSIIKETFNRGITLFDTSDVYGVDHDNEIMVGKALKQ-LPRDKIQLATKFGCFMLDGVSIGVKGSPEYVRKCCE 117 (289)
Q Consensus 39 ~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~~g~se~~lg~~l~~-~~R~~~~I~tK~~~~~~~~~~~~~~~~~~~i~~~~~ 117 (289)
.+.++...+.+.|.++|..|+=|+..|+.+|-+...+-...+. ..+-.+.++.-. .+.+...+-++
T Consensus 129 L~~~ei~~a~~ia~eaGADfvKTsTGf~~~gat~~dv~~m~~~v~~~v~IKaaGGi-------------rt~~~a~~~i~ 195 (211)
T TIGR00126 129 LTDEEIRKACEICIDAGADFVKTSTGFGAGGATVEDVRLMRNTVGDTIGVKASGGV-------------RTAEDAIAMIE 195 (211)
T ss_pred CCHHHHHHHHHHHHHhCCCEEEeCCCCCCCCCCHHHHHHHHHHhccCCeEEEeCCC-------------CCHHHHHHHHH
Q ss_pred HHHHHcCCCc
Q 022968 118 ASLKRLDVDY 127 (289)
Q Consensus 118 ~sL~~L~~~~ 127 (289)
.--.|+|+++
T Consensus 196 aGa~riGts~ 205 (211)
T TIGR00126 196 AGASRIGASA 205 (211)
T ss_pred HhhHHhCcch
No 110
>COG1801 Uncharacterized conserved protein [Function unknown]
Probab=49.55 E-value=1.8e+02 Score=25.41 Aligned_cols=111 Identities=6% Similarity=-0.053 Sum_probs=66.4
Q ss_pred ccccccccCCCCCCCCCCHHHHHHHHHHHHHcCCCeEeCCc-CcCCCChhHHHHHHHHhcCCCCCEEEEecccccccCCc
Q 022968 23 RLGFGCGGLSGIYNKPLSHEVGCSIIKETFNRGITLFDTSD-VYGVDHDNEIMVGKALKQLPRDKIQLATKFGCFMLDGV 101 (289)
Q Consensus 23 ~lg~G~~~~~~~~~~~~~~~~~~~~l~~A~~~Gi~~~DtA~-~Yg~~g~se~~lg~~l~~~~R~~~~I~tK~~~~~~~~~ 101 (289)
.||.+.|+....-|...++....+-.-..+...+|.+..-. .|. --+++.+-+|.++ ..+++.-+-|+...-...
T Consensus 4 ~IG~sGW~~~~w~~~~yp~~~~~~~~L~~y~~~f~~VEiN~TFYa--~p~~~t~~~W~~~-~p~~FrFsvK~~~~iTH~- 79 (263)
T COG1801 4 YIGTSGWSYPDWEGLFYPEGLKKKEFLAYYASHFNTVEINSTFYA--PPSPETVLRWAEE-TPDDFRFSVKAPRAITHQ- 79 (263)
T ss_pred EEeecCCCcccccccccCcccchhhHHHHHhccCCEEEECCcccC--CCCHHHHHHHHHh-CCCCeEEEEEecccccch-
Confidence 46777777654323222332333334445566677765322 555 4578888889885 678899999986433210
Q ss_pred ccCCCCC-HHHHHHHHHHHHHHcCCCcccEEeecCCCCCC
Q 022968 102 SIGVKGS-PEYVRKCCEASLKRLDVDYIDLYYQHRVDTSV 140 (289)
Q Consensus 102 ~~~~~~~-~~~i~~~~~~sL~~L~~~~iDl~~lh~~~~~~ 140 (289)
..-.+ ...+.+.+.+-++.|| +++..+++.-|....
T Consensus 80 --~~l~~~~~~~~~~~~~~~~~L~-~klg~il~Q~Ppsf~ 116 (263)
T COG1801 80 --RRLKECDFELWEFFLEPLAPLG-ERLGPILFQLPPSFK 116 (263)
T ss_pred --hhhccchHHHHHHHHHHHHhhh-cccceEEEecCCccc
Confidence 00011 2345555666666787 489999999987654
No 111
>PF11020 DUF2610: Domain of unknown function (DUF2610); InterPro: IPR021277 This family is conserved in Proteobacteria. One member is annotated as being elongation factor P but this could not be confirmed.
Probab=49.21 E-value=47 Score=23.20 Aligned_cols=30 Identities=23% Similarity=0.131 Sum_probs=25.4
Q ss_pred hHHHHHHHHHHHHHHHHhCCCHHHHHHHHH
Q 022968 246 LEKNKLLYTRLETLAAKYGCTTPQLALAWL 275 (289)
Q Consensus 246 ~~~~~~~~~~l~~ia~~~g~s~~q~al~w~ 275 (289)
.++..+.+.+|.++|++.|++.+++|.-.+
T Consensus 47 P~~V~~sl~kL~~La~~N~v~feeLc~YAL 76 (82)
T PF11020_consen 47 PEKVMDSLSKLYKLAKENNVSFEELCVYAL 76 (82)
T ss_pred CHHHHHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 467788899999999999999999886443
No 112
>PRK05283 deoxyribose-phosphate aldolase; Provisional
Probab=48.44 E-value=1.6e+02 Score=25.65 Aligned_cols=79 Identities=11% Similarity=0.024 Sum_probs=51.9
Q ss_pred CHH-HHHHHHHHHHHcCCCeEeCCcCcCCCChhHH---HHHHHHhcC-CCCCEEEEecccccccCCcccCCCCCHHHHHH
Q 022968 40 SHE-VGCSIIKETFNRGITLFDTSDVYGVDHDNEI---MVGKALKQL-PRDKIQLATKFGCFMLDGVSIGVKGSPEYVRK 114 (289)
Q Consensus 40 ~~~-~~~~~l~~A~~~Gi~~~DtA~~Yg~~g~se~---~lg~~l~~~-~R~~~~I~tK~~~~~~~~~~~~~~~~~~~i~~ 114 (289)
+++ +..++.+.|.++|..|+=|+..|+..|.+.+ ++-+++++. ...+ +.-|.... =.+.+...+
T Consensus 144 ~~ee~i~~a~~~a~~aGADFVKTSTGf~~~gAt~edv~lm~~~i~~~~~~~~--vgIKAsGG---------Irt~~~A~~ 212 (257)
T PRK05283 144 KDEALIRKASEIAIKAGADFIKTSTGKVPVNATLEAARIMLEVIRDMGVAKT--VGFKPAGG---------VRTAEDAAQ 212 (257)
T ss_pred CCHHHHHHHHHHHHHhCCCEEEcCCCCCCCCCCHHHHHHHHHHHHhcccCCC--eeEEccCC---------CCCHHHHHH
Confidence 444 5888999999999999999999975344433 344444321 0122 33343211 136778888
Q ss_pred HHHHHHHHcCCCccc
Q 022968 115 CCEASLKRLDVDYID 129 (289)
Q Consensus 115 ~~~~sL~~L~~~~iD 129 (289)
-++.--+.||.++++
T Consensus 213 ~i~ag~~~lg~~~~~ 227 (257)
T PRK05283 213 YLALADEILGADWAD 227 (257)
T ss_pred HHHHHHHHhChhhcC
Confidence 888888999988865
No 113
>PF10668 Phage_terminase: Phage terminase small subunit; InterPro: IPR018925 This entry describes the terminase small subunit from Enterococcus phage phiFL1A, related proteins in other bacteriophage, and prophage regions of bacterial genomes. Packaging of double-stranded viral DNA concatemers requires interaction of the prohead with virus DNA. This process is mediated by a phage-encoded DNA recognition and terminase protein. The terminase enzymes described so far, which are hetero-oligomers composed of a small and a large subunit, do not have a significant level of sequence homology. The small terminase subunit is thought to form a nucleoprotein structure that helps to position the terminase large subunit at the packaging initiation site [].
Probab=48.30 E-value=47 Score=21.91 Aligned_cols=17 Identities=24% Similarity=0.528 Sum_probs=15.1
Q ss_pred HHHHHHHHhCCCHHHHH
Q 022968 255 RLETLAAKYGCTTPQLA 271 (289)
Q Consensus 255 ~l~~ia~~~g~s~~q~a 271 (289)
.+.+||+++|++..++-
T Consensus 24 ~lkdIA~~Lgvs~~tIr 40 (60)
T PF10668_consen 24 KLKDIAEKLGVSESTIR 40 (60)
T ss_pred cHHHHHHHHCCCHHHHH
Confidence 68899999999999874
No 114
>cd01965 Nitrogenase_MoFe_beta_like Nitrogenase_MoFe_beta_like: Nitrogenase MoFe protein, beta subunit_like. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. This group contains the beta subunits of component 1 of the three known genetically distinct types of nitrogenase systems: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium-dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having alpha and beta subunits similar to the alpha and beta subunits of MoFe. For MoFe, each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (Fe
Probab=48.11 E-value=2.4e+02 Score=26.38 Aligned_cols=100 Identities=14% Similarity=0.110 Sum_probs=52.8
Q ss_pred hHHHHHHHHhc----CCCCCEEEEecccccccCCcccCCCCCHHHHHHHHHHHHHHcCC-----CcccEEeecCCCCCCC
Q 022968 71 NEIMVGKALKQ----LPRDKIQLATKFGCFMLDGVSIGVKGSPEYVRKCCEASLKRLDV-----DYIDLYYQHRVDTSVS 141 (289)
Q Consensus 71 se~~lg~~l~~----~~R~~~~I~tK~~~~~~~~~~~~~~~~~~~i~~~~~~sL~~L~~-----~~iDl~~lh~~~~~~~ 141 (289)
.|..|-+++++ .+.+-++|.|-+.... +-..++...+++.. ..+.++.+|.|.....
T Consensus 65 g~~~L~~~i~~~~~~~~p~~I~v~~tC~~~l--------------iGdDi~~v~~~~~~~~~~~~~~~vi~v~tpgf~g~ 130 (428)
T cd01965 65 GEDNLIEALKNLLSRYKPDVIGVLTTCLTET--------------IGDDVAGFIKEFRAEGPEPADFPVVYASTPSFKGS 130 (428)
T ss_pred cHHHHHHHHHHHHHhcCCCEEEEECCcchhh--------------cCCCHHHHHHHHHhhccCCCCCeEEEeeCCCCCCc
Confidence 36677777766 2344467777653322 22233333333332 1356777887765432
Q ss_pred H----HHHHHHHHHH-------HHcCccceeecCCC---CHHHHHHHHccCCceEEe
Q 022968 142 I----EDTMGELKKL-------VEEGKIKYIGLSEA---SADTIRRAHAVHPITAVQ 184 (289)
Q Consensus 142 ~----~~~~~~l~~l-------~~~G~ir~iGvs~~---~~~~l~~~~~~~~~~~~q 184 (289)
. +.++++|-+. ++.++|--||-++. +.+.++++++...+.++.
T Consensus 131 ~~~G~~~a~~al~~~~~~~~~~~~~~~VNlig~~~~~~~d~~el~~lL~~~Gl~v~~ 187 (428)
T cd01965 131 HETGYDNAVKAIIEQLAKPSEVKKNGKVNLLPGFPLTPGDVREIKRILEAFGLEPII 187 (428)
T ss_pred HHHHHHHHHHHHHHHHhcccCCCCCCeEEEECCCCCCccCHHHHHHHHHHcCCCEEE
Confidence 2 2234444322 23456877876654 357777777765555544
No 115
>PRK14457 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=47.94 E-value=2.2e+02 Score=25.95 Aligned_cols=108 Identities=12% Similarity=0.188 Sum_probs=65.3
Q ss_pred HHHHHHHHHHHcC-CCcccEEeecCCCCC-----------CCHHHHHHHHHH-HHHcCc---cceeecC--CCCHHHHH-
Q 022968 112 VRKCCEASLKRLD-VDYIDLYYQHRVDTS-----------VSIEDTMGELKK-LVEEGK---IKYIGLS--EASADTIR- 172 (289)
Q Consensus 112 i~~~~~~sL~~L~-~~~iDl~~lh~~~~~-----------~~~~~~~~~l~~-l~~~G~---ir~iGvs--~~~~~~l~- 172 (289)
+++-.+.-+++|+ .+....+-||.+++. .+++++++++.+ +.+.|+ |+++=+. |.+.+.++
T Consensus 196 i~~L~~~~~~~~~~~~~~laiSLha~~~e~r~~i~p~~~~~~l~~l~~~~~~y~~~~gr~I~iey~LIpGvNDs~e~a~~ 275 (345)
T PRK14457 196 IPQLAELAFQRLGRLQFTLAVSLHAPNQKLRETLIPSAKNYPIENLLEDCRHYVAITGRRVSFEYILLGGVNDLPEHAEE 275 (345)
T ss_pred HHHHHhhhhhhcccCceEEEEEeCCCCHHHHHHhcCCccCCCHHHHHHHHHHHHHHhCCEEEEEEEEECCcCCCHHHHHH
Confidence 4333333334443 233467889998653 236677777765 555664 6666554 34445544
Q ss_pred --HHHccCCceEEeccCCCCCcc----hh----hhhHHHHHHhCCeEEEcccCcccc
Q 022968 173 --RAHAVHPITAVQMEYSLWTRE----IE----DDIIPLCRELGIGIVAYSPLGRGF 219 (289)
Q Consensus 173 --~~~~~~~~~~~q~~~~~~~~~----~~----~~~~~~~~~~gi~v~a~~pl~~G~ 219 (289)
++++..+..++-++||++... +. ..+.+..+++|+.+..+...+..+
T Consensus 276 La~~l~~l~~~VnLIPynp~~~~~~~~ps~e~i~~f~~~L~~~Gi~vtvR~~~G~di 332 (345)
T PRK14457 276 LANLLRGFQSHVNLIPYNPIDEVEFQRPSPKRIQAFQRVLEQRGVAVSVRASRGLDA 332 (345)
T ss_pred HHHHHhcCCCeEEEecCCCCCCCCCCCCCHHHHHHHHHHHHHCCCeEEEeCCCCCch
Confidence 444444567888999986431 11 346667788899999888777544
No 116
>PRK02910 light-independent protochlorophyllide reductase subunit B; Provisional
Probab=47.84 E-value=2.7e+02 Score=26.92 Aligned_cols=99 Identities=15% Similarity=0.158 Sum_probs=50.3
Q ss_pred hHHHHHHHHhc----CCCCCEEEEecccccccCCcccCCCCCHHHHHHHHHHHHHHcCCCcccEEeecCCCCCCC----H
Q 022968 71 NEIMVGKALKQ----LPRDKIQLATKFGCFMLDGVSIGVKGSPEYVRKCCEASLKRLDVDYIDLYYQHRVDTSVS----I 142 (289)
Q Consensus 71 se~~lg~~l~~----~~R~~~~I~tK~~~~~~~~~~~~~~~~~~~i~~~~~~sL~~L~~~~iDl~~lh~~~~~~~----~ 142 (289)
+++.|-+++++ .+.+-++|.|-+. .+-|-..++...+.++. .++++.++.|..... .
T Consensus 69 ~~ekL~~aI~~~~~~~~P~~I~V~sTC~--------------seiIGdDi~~v~~~~~~-~~~Vi~v~t~gf~~~~~~G~ 133 (519)
T PRK02910 69 TAELLKDTLRRADERFQPDLIVVGPSCT--------------AELLQEDLGGLAKHAGL-PIPVLPLELNAYRVKENWAA 133 (519)
T ss_pred hHHHHHHHHHHHHHhcCCCEEEEeCCcH--------------HHHhccCHHHHHHHhCC-CCCEEEEecCCcccccchHH
Confidence 45566667665 2333356666542 33344444555555554 367999998865432 2
Q ss_pred HHHHHHHH-HHH-----------HcCccceeecCCC------CHHHHHHHHccCCceEEe
Q 022968 143 EDTMGELK-KLV-----------EEGKIKYIGLSEA------SADTIRRAHAVHPITAVQ 184 (289)
Q Consensus 143 ~~~~~~l~-~l~-----------~~G~ir~iGvs~~------~~~~l~~~~~~~~~~~~q 184 (289)
+.+++.+- .+. +.+.|.-||.++. +...++++++...+.++.
T Consensus 134 ~~al~~lv~~~~~~~~~~~~~~~~~~~VNIiG~~~l~f~~~~D~~EikrlL~~~Gi~vn~ 193 (519)
T PRK02910 134 DETFYQLVRALAKKAAELPQPKTARPSVNLLGPTALGFHHRDDLTELRRLLATLGIDVNV 193 (519)
T ss_pred HHHHHHHHHHHhhhcccccccCCCCCeEEEEecCccCCCChhHHHHHHHHHHHcCCeEEE
Confidence 22332222 111 1245777776542 234566666654444443
No 117
>TIGR00381 cdhD CO dehydrogenase/acetyl-CoA synthase, delta subunit. This is the small subunit of a heterodimer which catalyzes the reaction CO + H2O + Acceptor = CO2 + Reduced acceptor and is involved in the synthesis of acetyl-CoA from CO2 and H2.
Probab=47.82 E-value=2.3e+02 Score=26.23 Aligned_cols=103 Identities=17% Similarity=0.215 Sum_probs=61.8
Q ss_pred HHHHHHHHHHH-----------HHcCCCcccEEeecCCCCC-----CCHHHHHHHHHHHHHcCccc-eeecC---CCCHH
Q 022968 110 EYVRKCCEASL-----------KRLDVDYIDLYYQHRVDTS-----VSIEDTMGELKKLVEEGKIK-YIGLS---EASAD 169 (289)
Q Consensus 110 ~~i~~~~~~sL-----------~~L~~~~iDl~~lh~~~~~-----~~~~~~~~~l~~l~~~G~ir-~iGvs---~~~~~ 169 (289)
+.+++.++... +.++ +|++.||.-..+ .+.++..+..++..+.=.+= -|+=| ..+++
T Consensus 128 ~~i~~~~~dV~~dP~~wak~~V~~~~---aD~Ialr~~S~DP~~~d~~~~e~a~~vk~V~~av~vPLIL~gsg~~~kD~e 204 (389)
T TIGR00381 128 KPIRMHFEDVMEDPAEWARKCVKEFG---ADMVTIHLISTDPKLDDKSPSEAAKVLEDVLQAVDVPIVIGGSGNPEKDPL 204 (389)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHhC---CCEEEEEecCCCccccccCHHHHHHHHHHHHHhCCCCEEEeCCCCCcCCHH
Confidence 55666666655 4454 788888865322 34455666666654432222 22222 45788
Q ss_pred HHHHHHccC---CceEEeccCCCCCcchhhhhHHHHHHhCCeEEEcccCcccc
Q 022968 170 TIRRAHAVH---PITAVQMEYSLWTREIEDDIIPLCRELGIGIVAYSPLGRGF 219 (289)
Q Consensus 170 ~l~~~~~~~---~~~~~q~~~~~~~~~~~~~~~~~~~~~gi~v~a~~pl~~G~ 219 (289)
.++++++.. .+-++-. |.-. + ..++.+.|+++|..+++++|..-+.
T Consensus 205 VLeaaLe~~~G~kpLL~SA--t~e~-N-y~~ia~lAk~yg~~Vvv~s~~Din~ 253 (389)
T TIGR00381 205 VLEKAAEVAEGERCLLASA--NLDL-D-YEKIANAAKKYGHVVLSWTIMDINM 253 (389)
T ss_pred HHHHHHHHhCCCCcEEEec--Cchh-h-HHHHHHHHHHhCCeEEEEcCCcHHH
Confidence 888877752 2322222 2110 2 2689999999999999999987665
No 118
>TIGR02026 BchE magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase. This model respresents the cobalamin-dependent oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under anaerobic conditions. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under anaerobic conditions (a separate enzyme, AcsF, acts under aerobic conditions). This model identifies two clades of sequences, one from photosynthetic, non-cyanobacterial bacteria and another including Synechocystis and several non-photosynthetic bacteria. The function of the Synechocystis gene is supported by gene clustering with other photosynthetic genes, so the purpose of the gene in the non-photosynthetic bacteria is uncertain. Note that homologs of this gene are not found in plants which rely solely on the aerobic cyclase.
Probab=47.65 E-value=1.8e+02 Score=27.79 Aligned_cols=66 Identities=6% Similarity=0.042 Sum_probs=42.0
Q ss_pred CCHHHHHHHHHHHHHcCccce----eecCCCCHHHHHHHHcc---CCceEEeccCCCCCcchhhhhHHHHHHhCC
Q 022968 140 VSIEDTMGELKKLVEEGKIKY----IGLSEASADTIRRAHAV---HPITAVQMEYSLWTREIEDDIIPLCRELGI 207 (289)
Q Consensus 140 ~~~~~~~~~l~~l~~~G~ir~----iGvs~~~~~~l~~~~~~---~~~~~~q~~~~~~~~~~~~~~~~~~~~~gi 207 (289)
...++..++++.+++.|..-. +|+-+.+.+.+++.++. ..++..+ ++.+...+...+.+.+++.+.
T Consensus 320 ~t~~~~~~ai~~l~~~Gi~~~~~~I~G~P~et~e~~~~t~~~~~~l~~~~~~--~~~~tP~PGT~l~~~~~~~~~ 392 (497)
T TIGR02026 320 TTTSTNKEAIRLLRQHNILSEAQFITGFENETDETFEETYRQLLDWDPDQAN--WLMYTPWPFTSLFGELSDRVE 392 (497)
T ss_pred CCHHHHHHHHHHHHHCCCcEEEEEEEECCCCCHHHHHHHHHHHHHcCCCceE--EEEecCCCCcHHHHHHHhhcc
Confidence 456778899999999987433 36667777776665443 3344333 345554445678887777654
No 119
>TIGR01278 DPOR_BchB light-independent protochlorophyllide reductase, B subunit. This enzyme describes the B subunit of the dark form protochlorophyllide reductase, a nitrogenase-like enzyme. This subunit shows homology to the nitrogenase molybdenum-iron protein. It catalyzes a step in bacteriochlorophyll biosynthesis.
Probab=47.41 E-value=2.7e+02 Score=26.83 Aligned_cols=100 Identities=11% Similarity=0.090 Sum_probs=54.9
Q ss_pred hHHHHHHHHhc----CCCCCEEEEecccccccCCcccCCCCCHHHHHHHHHHHHHHcCCCcccEEeecCCCCCCCHH-HH
Q 022968 71 NEIMVGKALKQ----LPRDKIQLATKFGCFMLDGVSIGVKGSPEYVRKCCEASLKRLDVDYIDLYYQHRVDTSVSIE-DT 145 (289)
Q Consensus 71 se~~lg~~l~~----~~R~~~~I~tK~~~~~~~~~~~~~~~~~~~i~~~~~~sL~~L~~~~iDl~~lh~~~~~~~~~-~~ 145 (289)
+++.|-+++++ .+.+-++|.+-+ ..+-|-+.++...+.++.+.++++.++.|....... ..
T Consensus 69 ~~~~L~~aI~~~~~~~~P~~I~V~sTC--------------~selIGdDi~~~~~~~~~~~~pvi~v~t~gf~g~~~~g~ 134 (511)
T TIGR01278 69 SQTRLVDTVRRVDDRFKPDLIVVTPSC--------------TSSLLQEDLGNLAAAAGLDKSKVIVADVNAYRRKENQAA 134 (511)
T ss_pred hHHHHHHHHHHHHHhcCCCEEEEeCCC--------------hHHHhccCHHHHHHHhccCCCcEEEecCCCcccchhHHH
Confidence 46677777765 233445555543 234444455555555665568899999886543321 22
Q ss_pred HHHHHHHH--------------HcCccceeecCCC------CHHHHHHHHccCCceEEe
Q 022968 146 MGELKKLV--------------EEGKIKYIGLSEA------SADTIRRAHAVHPITAVQ 184 (289)
Q Consensus 146 ~~~l~~l~--------------~~G~ir~iGvs~~------~~~~l~~~~~~~~~~~~q 184 (289)
-.+++.++ +.+.|.-||.++. +...++++++...+.++.
T Consensus 135 ~~al~~lv~~~~~~~~~~~~~~~~~~VNIiG~~~l~~~~~~D~~elkrlL~~lGi~vn~ 193 (511)
T TIGR01278 135 DRTLTQLVRRFAKEQPKPGRTTEKPSVNLLGPASLGFHHRHDLIELRRLLKTLGIEVNV 193 (511)
T ss_pred HHHHHHHHHHHHhccccccccCCCCcEEEEeCCCCCCCCHHHHHHHHHHHHHCCCeEEE
Confidence 22333222 2355777887753 345666666665555443
No 120
>cd02930 DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain. DCR in E. coli is an iron-sulfur flavoenzyme which contains FMN, FAD, and a 4Fe-4S cluster. It is also a monomer, unlike that of its eukaryotic counterparts which form homotetramers and lack the flavin and iron-sulfur cofactors. Metabolism of unsaturated fatty acids requires auxiliary enzymes in addition to those used in b-oxidation. After a given number of cycles through the b-oxidation pathway, those unsaturated fatty acyl-CoAs with double bonds at even-numbered carbon positions contain 2-trans, 4-cis double bonds that can not be modified by enoyl-CoA hydratase. DCR utilizes NADPH to remove the C4-C5 double bond. DCR can catalyze the reduction of both natural fatty acids with cis double bonds, as well as substrates containing trans double bonds. The reaction is initiated by hybrid transfer from NADPH to FAD, which in turn transfers electrons, one at a time, to FMN via the 4Fe-4S cluster. The fully reduced FMN provi
Probab=46.96 E-value=2.2e+02 Score=25.79 Aligned_cols=24 Identities=21% Similarity=0.032 Sum_probs=15.9
Q ss_pred CCCHHHHHHHH-------HHHHHcCCCeEeC
Q 022968 38 PLSHEVGCSII-------KETFNRGITLFDT 61 (289)
Q Consensus 38 ~~~~~~~~~~l-------~~A~~~Gi~~~Dt 61 (289)
.++.++..+++ +.|.++|+..++-
T Consensus 126 ~mt~~eI~~i~~~f~~aA~~a~~aGfDgVei 156 (353)
T cd02930 126 ELSEEEIEQTIEDFARCAALAREAGYDGVEI 156 (353)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHcCCCEEEE
Confidence 35666654443 4567889999886
No 121
>PRK06582 coproporphyrinogen III oxidase; Provisional
Probab=46.81 E-value=1.1e+02 Score=28.34 Aligned_cols=61 Identities=11% Similarity=0.065 Sum_probs=39.7
Q ss_pred CCCHHHHHHHHHHHHHHcCCCcccEEeecC-CCCC-----------CC-HHH---HH-HHHHHHHHcCccceeecCCCCH
Q 022968 106 KGSPEYVRKCCEASLKRLDVDYIDLYYQHR-VDTS-----------VS-IED---TM-GELKKLVEEGKIKYIGLSEASA 168 (289)
Q Consensus 106 ~~~~~~i~~~~~~sL~~L~~~~iDl~~lh~-~~~~-----------~~-~~~---~~-~~l~~l~~~G~ir~iGvs~~~~ 168 (289)
.-+.+.+++.++..++ |+.++|.+|.|.- |... .+ .++ .+ .+.+.|.+.|..+ +++|||..
T Consensus 173 gqt~e~~~~~l~~~~~-l~p~his~y~L~i~~gT~l~~~~~~g~~~~p~~~~~~~~~~~~~~~L~~~Gy~~-yeis~fa~ 250 (390)
T PRK06582 173 GQTLKDWQEELKQAMQ-LATSHISLYQLTIEKGTPFYKLFKEGNLILPHSDAAAEMYEWTNHYLESKKYFR-YEISNYAK 250 (390)
T ss_pred CCCHHHHHHHHHHHHh-cCCCEEEEecCEEccCChHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHcCCce-eeceeeeC
Confidence 3577888888888886 8999999998863 3110 01 111 22 3445677777754 78998864
No 122
>PLN00191 enolase
Probab=46.57 E-value=1.9e+02 Score=27.58 Aligned_cols=97 Identities=9% Similarity=0.081 Sum_probs=66.3
Q ss_pred CCHHHHHHHHHHHHHHcCCCcccEEeecCCCCCCCHHHHHHHHHHHHHcCccceeecC--CCCHHHHHHHHccCCceEEe
Q 022968 107 GSPEYVRKCCEASLKRLDVDYIDLYYQHRVDTSVSIEDTMGELKKLVEEGKIKYIGLS--EASADTIRRAHAVHPITAVQ 184 (289)
Q Consensus 107 ~~~~~i~~~~~~sL~~L~~~~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~iGvs--~~~~~~l~~~~~~~~~~~~q 184 (289)
.+++...+-++..++ ..++.+|-.|-+. +-|+.+.+|.+..++.-+|=- ..+++.+.++++....++++
T Consensus 295 ~s~~e~i~~~~~L~~-----~y~I~~IEDPl~~----~D~eg~~~Lt~~~~ipIvgDE~~vtn~~~l~~~I~~~aad~i~ 365 (457)
T PLN00191 295 KSGDELIDLYKEFVS-----DYPIVSIEDPFDQ----DDWEHWAKLTSLEDVQIVGDDLLVTNPKRVAKAIQEKACNALL 365 (457)
T ss_pred cCHHHHHHHHHHHhh-----cCCcEEEECCCCc----ccHHHHHHHHccCCCcEEccCcccCCHHHHHHHHHhCCCCEEE
Confidence 355555555544433 3456677766433 347778888888777766622 25688899999988889999
Q ss_pred ccCCCCCcc-hhhhhHHHHHHhCCeEEEc
Q 022968 185 MEYSLWTRE-IEDDIIPLCRELGIGIVAY 212 (289)
Q Consensus 185 ~~~~~~~~~-~~~~~~~~~~~~gi~v~a~ 212 (289)
+..|-.-.- ...++.+.|+++|+.++.-
T Consensus 366 iKl~qiGGITea~~~a~lA~~~G~~~~is 394 (457)
T PLN00191 366 LKVNQIGTVTESIEAVKMSKAAGWGVMTS 394 (457)
T ss_pred ecccccCCHHHHHHHHHHHHHCCCEEEeC
Confidence 988865432 2267899999999999763
No 123
>PRK09427 bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase; Provisional
Probab=46.19 E-value=59 Score=30.83 Aligned_cols=65 Identities=18% Similarity=0.238 Sum_probs=42.8
Q ss_pred HHHcCCCcccEEeecCCCCCCCHHHHHHHHHHHHHcCccceeecC-CCCHHHHHHHHccCCceEEeccCC
Q 022968 120 LKRLDVDYIDLYYQHRVDTSVSIEDTMGELKKLVEEGKIKYIGLS-EASADTIRRAHAVHPITAVQMEYS 188 (289)
Q Consensus 120 L~~L~~~~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~iGvs-~~~~~~l~~~~~~~~~~~~q~~~~ 188 (289)
...+|.|++=+.+........+.+.+-+-...+. ++.+||- |-+++.+.++++...++++|+.-+
T Consensus 273 a~~~GaD~lGfIf~~~SpR~V~~~~a~~i~~~l~----v~~VgVfv~~~~~~i~~i~~~~~lD~vQLHG~ 338 (454)
T PRK09427 273 AYDAGAVYGGLIFVEKSPRYVSLEQAQEIIAAAP----LRYVGVFRNADIEDIVDIAKQLSLAAVQLHGD 338 (454)
T ss_pred HHhCCCCEEeeEeCCCCCCCCCHHHHHHHHHhCC----CCEEEEEeCCCHHHHHHHHHHcCCCEEEeCCC
Confidence 3458888888864332222333333322222222 8889996 778899999988899999999654
No 124
>PRK07945 hypothetical protein; Provisional
Probab=45.18 E-value=2.4e+02 Score=25.55 Aligned_cols=107 Identities=13% Similarity=0.026 Sum_probs=54.7
Q ss_pred HHHHHHHHHHHHcCCCeEeCCcCcCC----CChhHHHHHHHHhc------CCCCCEEEEecccccccCCcccCCCCCHHH
Q 022968 42 EVGCSIIKETFNRGITLFDTSDVYGV----DHDNEIMVGKALKQ------LPRDKIQLATKFGCFMLDGVSIGVKGSPEY 111 (289)
Q Consensus 42 ~~~~~~l~~A~~~Gi~~~DtA~~Yg~----~g~se~~lg~~l~~------~~R~~~~I~tK~~~~~~~~~~~~~~~~~~~ 111 (289)
....+++.+|.+.|+..+=.++|.-. .+.+...+-+.++. .-++ +.| +.|.-.. ..++.+.+.
T Consensus 111 ~~~ee~v~~Ai~~Gl~~i~~TDH~p~~~~~~~~~~~~l~~y~~~i~~l~~ky~~-I~I--l~GiE~d----~~~~g~~~~ 183 (335)
T PRK07945 111 SPIEEMARTAAALGHEYCALTDHSPRLTVANGLSAERLRKQLDVVAELNEELAP-FRI--LTGIEVD----ILDDGSLDQ 183 (335)
T ss_pred CCHHHHHHHHHHCCCCEEEEeCCCCCccCCCCCCHHHHHHHHHHHHHHHHhcCC-ceE--EEEeEec----ccCCCCcch
Confidence 34689999999999999877766421 01122222222222 1112 222 2222110 001122222
Q ss_pred HHHHHHHHHHHcCCCcccEEeecCCCCCCCHHHHHHHHHHHHHcCccceeec
Q 022968 112 VRKCCEASLKRLDVDYIDLYYQHRVDTSVSIEDTMGELKKLVEEGKIKYIGL 163 (289)
Q Consensus 112 i~~~~~~sL~~L~~~~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~iGv 163 (289)
. ++.|+. .||+ +.-+|+... .+.++..+.|.++.+.+.+..+|=
T Consensus 184 ~----~~~l~~--~D~v-IgSvH~~~~-~~~~~~~~~l~~ai~~~~~dvlgH 227 (335)
T PRK07945 184 E----PELLDR--LDVV-VASVHSKLR-MDAAAMTRRMLAAVANPHTDVLGH 227 (335)
T ss_pred h----HHHHHh--CCEE-EEEeecCCC-CCHHHHHHHHHHHhcCCCCeEEec
Confidence 2 333333 3554 566787643 234566788888888888777773
No 125
>PLN02363 phosphoribosylanthranilate isomerase
Probab=45.03 E-value=81 Score=27.42 Aligned_cols=74 Identities=23% Similarity=0.322 Sum_probs=47.4
Q ss_pred CHHHHHHHHHHHHHHcCCCcccEEeecCCCCCCCHHHHHHHHHHHHHcCccceeecC-CCCHHHHHHHHccCCceEEecc
Q 022968 108 SPEYVRKCCEASLKRLDVDYIDLYYQHRVDTSVSIEDTMGELKKLVEEGKIKYIGLS-EASADTIRRAHAVHPITAVQME 186 (289)
Q Consensus 108 ~~~~i~~~~~~sL~~L~~~~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~iGvs-~~~~~~l~~~~~~~~~~~~q~~ 186 (289)
+.+.++.+. ++|.|++=+.+..........+ ..+.+.+......++.+||. |-+.+.+.++++...++++|+.
T Consensus 56 ~~eda~~a~-----~~GaD~iGfIf~~~SpR~Vs~e-~a~~I~~~l~~~~~~~VgVfv~~~~~~I~~~~~~~~ld~VQLH 129 (256)
T PLN02363 56 SARDAAMAV-----EAGADFIGMILWPKSKRSISLS-VAKEISQVAREGGAKPVGVFVDDDANTILRAADSSDLELVQLH 129 (256)
T ss_pred cHHHHHHHH-----HcCCCEEEEecCCCCCCcCCHH-HHHHHHHhccccCccEEEEEeCCCHHHHHHHHHhcCCCEEEEC
Confidence 344454444 5999999986433222223333 33333333333246779995 8888999999988899999996
Q ss_pred C
Q 022968 187 Y 187 (289)
Q Consensus 187 ~ 187 (289)
-
T Consensus 130 G 130 (256)
T PLN02363 130 G 130 (256)
T ss_pred C
Confidence 4
No 126
>COG1168 MalY Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities [Amino acid transport and metabolism]
Probab=44.84 E-value=2.6e+02 Score=25.88 Aligned_cols=56 Identities=14% Similarity=0.137 Sum_probs=31.5
Q ss_pred CHHHHHHHHccCC--ceEEeccCCCCCcc----hhhhhHHHHHHhCCeEEEcccCccccCCC
Q 022968 167 SADTIRRAHAVHP--ITAVQMEYSLWTRE----IEDDIIPLCRELGIGIVAYSPLGRGFFAG 222 (289)
Q Consensus 167 ~~~~l~~~~~~~~--~~~~q~~~~~~~~~----~~~~~~~~~~~~gi~v~a~~pl~~G~L~~ 222 (289)
+.++|++.+.... .-+.-.+-||.-+- ....+.+.|++|||.||+=...+-=.++|
T Consensus 146 D~~~LE~~~~~~~vkl~iLCnPHNP~Grvwt~eeL~~i~elc~kh~v~VISDEIHaDlv~~g 207 (388)
T COG1168 146 DFDALEKAFVDERVKLFILCNPHNPTGRVWTKEELRKIAELCLRHGVRVISDEIHADLVLGG 207 (388)
T ss_pred cHHHHHHHHhcCCccEEEEeCCCCCCCccccHHHHHHHHHHHHHcCCEEEeecccccccccC
Confidence 4455555544432 22223344444332 22678999999999999755554334444
No 127
>COG2873 MET17 O-acetylhomoserine sulfhydrylase [Amino acid transport and metabolism]
Probab=44.71 E-value=2.6e+02 Score=25.92 Aligned_cols=75 Identities=16% Similarity=0.154 Sum_probs=46.6
Q ss_pred cCCCCCCCCCCH-HHHHHHHHHHHHcCCCeEeCCcCcCCCChhHHHHHHHHhc--CCCCCEEEEecccccccCCcccCCC
Q 022968 30 GLSGIYNKPLSH-EVGCSIIKETFNRGITLFDTSDVYGVDHDNEIMVGKALKQ--LPRDKIQLATKFGCFMLDGVSIGVK 106 (289)
Q Consensus 30 ~~~~~~~~~~~~-~~~~~~l~~A~~~Gi~~~DtA~~Yg~~g~se~~lg~~l~~--~~R~~~~I~tK~~~~~~~~~~~~~~ 106 (289)
..|..|.+-+++ .++.+-=-+|+|-|+--+-||. |.+-..+ ++-. ..-|.++-++++....
T Consensus 51 ~~G~iYsRi~NPT~~vlE~RiAaLEGG~aa~a~aS-----G~AA~~~--ai~~la~aGD~iVss~~LYGGT--------- 114 (426)
T COG2873 51 EPGNIYTRIMNPTTDVLEERIAALEGGVAALAVAS-----GQAAITY--AILNLAGAGDNIVSSSKLYGGT--------- 114 (426)
T ss_pred cCCceeeeccCchHHHHHHHHHHhhcchhhhhhcc-----chHHHHH--HHHHhccCCCeeEeeccccCch---------
Confidence 334555443322 3456666679999999888886 3333332 3322 3677788777764322
Q ss_pred CCHHHHHHHHHHHHHHcCCC
Q 022968 107 GSPEYVRKCCEASLKRLDVD 126 (289)
Q Consensus 107 ~~~~~i~~~~~~sL~~L~~~ 126 (289)
...+..+|+++|++
T Consensus 115 ------~~lf~~tl~~~Gi~ 128 (426)
T COG2873 115 ------YNLFSHTLKRLGIE 128 (426)
T ss_pred ------HHHHHHHHHhcCcE
Confidence 45778899999964
No 128
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members. are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....
Probab=44.49 E-value=1.9e+02 Score=24.29 Aligned_cols=97 Identities=21% Similarity=0.211 Sum_probs=53.1
Q ss_pred CCHHHHHHHHHHHHHHcCCCcccEEeecCCCCCCCHHHHHHHHHHHHHcCccceeecCCCCHHHHHHHHc---cCCceEE
Q 022968 107 GSPEYVRKCCEASLKRLDVDYIDLYYQHRVDTSVSIEDTMGELKKLVEEGKIKYIGLSEASADTIRRAHA---VHPITAV 183 (289)
Q Consensus 107 ~~~~~i~~~~~~sL~~L~~~~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~~~---~~~~~~~ 183 (289)
++.+...+ +-+.|.++|+++|++- .|.......+.++.+.+.... .+-.+++......++.+.+ ....+.+
T Consensus 11 ~~~~~k~~-i~~~L~~~Gv~~iEvg---~~~~~~~~~~~v~~~~~~~~~--~~~~~~~~~~~~~i~~~~~~~~~~g~~~i 84 (237)
T PF00682_consen 11 FSTEEKLE-IAKALDEAGVDYIEVG---FPFASEDDFEQVRRLREALPN--ARLQALCRANEEDIERAVEAAKEAGIDII 84 (237)
T ss_dssp --HHHHHH-HHHHHHHHTTSEEEEE---HCTSSHHHHHHHHHHHHHHHS--SEEEEEEESCHHHHHHHHHHHHHTTSSEE
T ss_pred cCHHHHHH-HHHHHHHhCCCEEEEc---ccccCHHHHHHhhhhhhhhcc--cccceeeeehHHHHHHHHHhhHhccCCEE
Confidence 44555444 4456999999999987 222221223445555555555 4444555556665555433 2344444
Q ss_pred eccCCCCC--------------cchhhhhHHHHHHhCCeE
Q 022968 184 QMEYSLWT--------------REIEDDIIPLCRELGIGI 209 (289)
Q Consensus 184 q~~~~~~~--------------~~~~~~~~~~~~~~gi~v 209 (289)
.+..+.-+ -+.-.+.+++++++|..+
T Consensus 85 ~i~~~~s~~~~~~~~~~~~~~~~~~~~~~v~~ak~~g~~v 124 (237)
T PF00682_consen 85 RIFISVSDLHIRKNLNKSREEALERIEEAVKYAKELGYEV 124 (237)
T ss_dssp EEEEETSHHHHHHHTCSHHHHHHHHHHHHHHHHHHTTSEE
T ss_pred EecCcccHHHHHHhhcCCHHHHHHHHHHHHHHHHhcCCce
Confidence 44333221 011156889999999998
No 129
>PRK12928 lipoyl synthase; Provisional
Probab=44.30 E-value=2.3e+02 Score=25.10 Aligned_cols=161 Identities=15% Similarity=0.175 Sum_probs=0.0
Q ss_pred CCHHHHHHHHHHHHHcCCCeEeCCcCcC---CCChhHHHHHHHHhcCCCCCEEEEecccccccCCcccCCCCCHHHHHHH
Q 022968 39 LSHEVGCSIIKETFNRGITLFDTSDVYG---VDHDNEIMVGKALKQLPRDKIQLATKFGCFMLDGVSIGVKGSPEYVRKC 115 (289)
Q Consensus 39 ~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg---~~g~se~~lg~~l~~~~R~~~~I~tK~~~~~~~~~~~~~~~~~~~i~~~ 115 (289)
.+.++..+.++.+.+.|++.+-...... . ...-..+.+.++.+....-.+..++ .+++.+..
T Consensus 87 ~~~eei~~~a~~~~~~G~keivitg~~~dDl~-d~g~~~~~ell~~Ik~~~p~~~I~~-------------ltp~~~~~- 151 (290)
T PRK12928 87 LDPDEPERVAEAVAALGLRYVVLTSVARDDLP-DGGAAHFVATIAAIRARNPGTGIEV-------------LTPDFWGG- 151 (290)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEEEEeCCccc-ccCHHHHHHHHHHHHhcCCCCEEEE-------------eccccccC-
Q ss_pred HHHHHHHcCCCcccEEee---------cCCCCCCCHHHHHHHHHHHHHcC---cccee---ecCCCCHHHHHHHHcc---
Q 022968 116 CEASLKRLDVDYIDLYYQ---------HRVDTSVSIEDTMGELKKLVEEG---KIKYI---GLSEASADTIRRAHAV--- 177 (289)
Q Consensus 116 ~~~sL~~L~~~~iDl~~l---------h~~~~~~~~~~~~~~l~~l~~~G---~ir~i---Gvs~~~~~~l~~~~~~--- 177 (289)
.++.|+.|.-...|++.. .........++.++.++.+++.| .++.- |+ .-+.+++.+.+..
T Consensus 152 ~~e~L~~l~~Ag~~i~~hnlEt~~~vl~~m~r~~t~e~~le~l~~ak~~gp~i~~~s~iIvG~-GET~ed~~etl~~Lre 230 (290)
T PRK12928 152 QRERLATVLAAKPDVFNHNLETVPRLQKAVRRGADYQRSLDLLARAKELAPDIPTKSGLMLGL-GETEDEVIETLRDLRA 230 (290)
T ss_pred CHHHHHHHHHcCchhhcccCcCcHHHHHHhCCCCCHHHHHHHHHHHHHhCCCceecccEEEeC-CCCHHHHHHHHHHHHh
Q ss_pred CCceEEec-cCCC-----------CCcchhhhhHHHHHHhCCeEEEcccC
Q 022968 178 HPITAVQM-EYSL-----------WTREIEDDIIPLCRELGIGIVAYSPL 215 (289)
Q Consensus 178 ~~~~~~q~-~~~~-----------~~~~~~~~~~~~~~~~gi~v~a~~pl 215 (289)
..++.+.+ +|.. +.+.....+.+.+.+.|...++.+||
T Consensus 231 l~~d~v~i~~Yl~p~~~~~~v~~~~~~~~f~~~~~~~~~~g~~~~~~~p~ 280 (290)
T PRK12928 231 VGCDRLTIGQYLRPSLAHLPVQRYWTPEEFEALGQIARELGFSHVRSGPL 280 (290)
T ss_pred cCCCEEEEEcCCCCCccCCceeeccCHHHHHHHHHHHHHcCCceeEecCc
No 130
>PRK09284 thiamine biosynthesis protein ThiC; Provisional
Probab=44.08 E-value=3e+02 Score=26.79 Aligned_cols=176 Identities=12% Similarity=0.088 Sum_probs=92.3
Q ss_pred CHHHHHHHHHHHHHcCCCe-EeCCcCcCCCChhHHHHHHHH-hcCCCCCEEEEeccccccc--CCcccCCCCCHHHHHHH
Q 022968 40 SHEVGCSIIKETFNRGITL-FDTSDVYGVDHDNEIMVGKAL-KQLPRDKIQLATKFGCFML--DGVSIGVKGSPEYVRKC 115 (289)
Q Consensus 40 ~~~~~~~~l~~A~~~Gi~~-~DtA~~Yg~~g~se~~lg~~l-~~~~R~~~~I~tK~~~~~~--~~~~~~~~~~~~~i~~~ 115 (289)
+.++-.+-+..|.+.|-.. -|-+. -| +-..+-+++ +. ..+=|-| +..... .......+.+.+.+.+.
T Consensus 230 ~ieeEveK~~~A~~~GADtvMDLST-Gg----di~~~R~~Il~~---spvPvGT-VPiYqA~~~~~~~~~~lt~e~~~d~ 300 (607)
T PRK09284 230 SIEEEVEKMVWATRWGADTVMDLST-GK----NIHETREWILRN---SPVPIGT-VPIYQALEKVNGVAEDLTWEIFRDT 300 (607)
T ss_pred CHHHHHHHHHHHHHcCCCEEEecCC-CC----CHHHHHHHHHHc---CCCCccC-ccHHHHHHHhcCChhhCCHHHHHHH
Confidence 4455566678888888765 46553 22 333333333 32 1122221 110000 00011224667777777
Q ss_pred HHHHHHHcCCCcccEEeecCCCCCCCHHHHHHHHHHHHHcCccceeecCCCCHHHHHHHHccCCceEEeccCCCCCcchh
Q 022968 116 CEASLKRLDVDYIDLYYQHRVDTSVSIEDTMGELKKLVEEGKIKYIGLSEASADTIRRAHAVHPITAVQMEYSLWTREIE 195 (289)
Q Consensus 116 ~~~sL~~L~~~~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~~~~~~~~~~q~~~~~~~~~~~ 195 (289)
+++-.+ +-+|.+-||.-- ..+.++.++ + |..|+-+-.-..+...+-... .=|++...+
T Consensus 301 ieeQAe----qGVDf~TIHaGv-------~~~~v~~~~--~--R~tgIVSRGGSima~Wml~h~------kENplYe~F- 358 (607)
T PRK09284 301 LIEQAE----QGVDYFTIHAGV-------LLRYVPLTA--K--RVTGIVSRGGSIMAKWCLAHH------KENFLYTHF- 358 (607)
T ss_pred HHHHHH----hCCCEEEEChhh-------HHHHHHHHh--C--cccCcccCCHHHHHHHHHHcC------CcCcHHHHH-
Confidence 766665 457888899742 244444444 2 777877666555555433221 123444443
Q ss_pred hhhHHHHHHhCCeEEEcccCccccCCCCC-CCCCCCcchhhhcCCCCCccchHHHHHHHHHHHHHHHHhCC
Q 022968 196 DDIIPLCRELGIGIVAYSPLGRGFFAGKA-VVESLPSESILAMHPRFSGENLEKNKLLYTRLETLAAKYGC 265 (289)
Q Consensus 196 ~~~~~~~~~~gi~v~a~~pl~~G~L~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ia~~~g~ 265 (289)
.++++.|++++|.+ .|+-|+-.|.. +..+ +.--+.+..+-+|.+.|.++|+
T Consensus 359 D~ileI~k~YDVtl----SLGDGLRPG~iaDA~D---------------~AQ~~EL~tLGELt~rA~e~gV 410 (607)
T PRK09284 359 EEICEIMAAYDVSF----SLGDGLRPGSIADAND---------------EAQFAELETLGELTKIAWEHDV 410 (607)
T ss_pred HHHHHHHHHhCeee----eccCCcCCCccccCCc---------------HHHHHHHHHHHHHHHHHHHcCC
Confidence 68999999999998 46666644431 1110 0011235555667777777775
No 131
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated
Probab=43.78 E-value=3e+02 Score=26.35 Aligned_cols=124 Identities=10% Similarity=-0.033 Sum_probs=71.7
Q ss_pred CcccEEeecCCCCCCCHHHHHHHHHHHHHcCccceeecCCCCHHHHHHHHccCCceEEeccCCCCCcc------------
Q 022968 126 DYIDLYYQHRVDTSVSIEDTMGELKKLVEEGKIKYIGLSEASADTIRRAHAVHPITAVQMEYSLWTRE------------ 193 (289)
Q Consensus 126 ~~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~~~~~~~~~~q~~~~~~~~~------------ 193 (289)
...|+++.--|+.......++..++.+...+.|-.-..|..+...+.+.+......++-.++|+....
T Consensus 79 ~~aD~Vieavpe~~~vk~~l~~~l~~~~~~~~iI~SsTsgi~~s~l~~~~~~~~r~~~~hP~nP~~~~~Lvevv~g~~t~ 158 (495)
T PRK07531 79 AGADWIQESVPERLDLKRRVLAEIDAAARPDALIGSSTSGFLPSDLQEGMTHPERLFVAHPYNPVYLLPLVELVGGGKTS 158 (495)
T ss_pred cCCCEEEEcCcCCHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHhhcCCcceEEEEecCCCcccCceEEEcCCCCCC
Confidence 35788888777654334456777777777776654455556677777666543334455555554211
Q ss_pred --hhhhhHHHHHHhCCeEEEcccCccccCCCCCCCCCCCcchhhhcCCCCCccchHHHHHH-HHHHHHHHHHhCCCHHHH
Q 022968 194 --IEDDIIPLCRELGIGIVAYSPLGRGFFAGKAVVESLPSESILAMHPRFSGENLEKNKLL-YTRLETLAAKYGCTTPQL 270 (289)
Q Consensus 194 --~~~~~~~~~~~~gi~v~a~~pl~~G~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~ia~~~g~s~~q~ 270 (289)
....+.++++..|-..+.......|++. .+.+.. +.+.-.++++.++++.++
T Consensus 159 ~e~~~~~~~~~~~lG~~~v~~~k~~~gfi~-------------------------nrl~~a~~~EA~~L~~~g~~s~~~i 213 (495)
T PRK07531 159 PETIRRAKEILREIGMKPVHIAKEIDAFVG-------------------------DRLLEALWREALWLVKDGIATTEEI 213 (495)
T ss_pred HHHHHHHHHHHHHcCCEEEeecCCCcchhH-------------------------HHHHHHHHHHHHHHHHcCCCCHHHH
Confidence 1134556666667665554444444432 122333 356667788888998876
Q ss_pred HHHH
Q 022968 271 ALAW 274 (289)
Q Consensus 271 al~w 274 (289)
--.+
T Consensus 214 d~~~ 217 (495)
T PRK07531 214 DDVI 217 (495)
T ss_pred HHHH
Confidence 4433
No 132
>smart00642 Aamy Alpha-amylase domain.
Probab=43.62 E-value=38 Score=27.25 Aligned_cols=21 Identities=10% Similarity=0.290 Sum_probs=16.9
Q ss_pred hhhHHHHHHhCCeEEEcccCc
Q 022968 196 DDIIPLCRELGIGIVAYSPLG 216 (289)
Q Consensus 196 ~~~~~~~~~~gi~v~a~~pl~ 216 (289)
+++++.|+++||.|+.=-++.
T Consensus 73 ~~lv~~~h~~Gi~vilD~V~N 93 (166)
T smart00642 73 KELVDAAHARGIKVILDVVIN 93 (166)
T ss_pred HHHHHHHHHCCCEEEEEECCC
Confidence 789999999999998644443
No 133
>cd03326 MR_like_1 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 1. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown.
Probab=43.55 E-value=2.7e+02 Score=25.73 Aligned_cols=149 Identities=13% Similarity=-0.016 Sum_probs=84.8
Q ss_pred CHHHHHHHHHHHHHcCCCeEeCCcCcCCCChhHHHHHHHHhcCCCCCEEEEecccccccCCcccCCCCCHHHHHHHHHHH
Q 022968 40 SHEVGCSIIKETFNRGITLFDTSDVYGVDHDNEIMVGKALKQLPRDKIQLATKFGCFMLDGVSIGVKGSPEYVRKCCEAS 119 (289)
Q Consensus 40 ~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~~g~se~~lg~~l~~~~R~~~~I~tK~~~~~~~~~~~~~~~~~~~i~~~~~~s 119 (289)
+.++..+.+..+++.|++.|=.--.-.+ ...+...=+++++.-.+++.|..=.. ..++.+... +.
T Consensus 160 ~~~~~~~~a~~~~~~Gf~~~Kikvg~~~-~~~di~~v~avRe~~G~~~~l~vDaN----------~~w~~~~A~----~~ 224 (385)
T cd03326 160 DLGRLRDEMRRYLDRGYTVVKIKIGGAP-LDEDLRRIEAALDVLGDGARLAVDAN----------GRFDLETAI----AY 224 (385)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEeCCCCC-HHHHHHHHHHHHHhcCCCCeEEEECC----------CCCCHHHHH----HH
Confidence 4566777778888999998753211000 01112222344432122333332221 123444322 23
Q ss_pred HHHcCCCcccEEeecCCCCCCCHHHHHHHHHHHHHcCccc-eeecCCCCHHHHHHHHccCCc----eEEeccCCCCCcc-
Q 022968 120 LKRLDVDYIDLYYQHRVDTSVSIEDTMGELKKLVEEGKIK-YIGLSEASADTIRRAHAVHPI----TAVQMEYSLWTRE- 193 (289)
Q Consensus 120 L~~L~~~~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir-~iGvs~~~~~~l~~~~~~~~~----~~~q~~~~~~~~~- 193 (289)
++.|. .+++.++..|-+. +.++.+..|++...+- ..|=|-++...+..+++..-. +++|....-.-.-
T Consensus 225 ~~~l~--~~~~~~iEeP~~~----~d~~~~~~L~~~~~iPIa~gEs~~~~~~~~~li~~~a~~~~~div~~d~~~~GGit 298 (385)
T cd03326 225 AKALA--PYGLRWYEEPGDP----LDYALQAELADHYDGPIATGENLFSLQDARNLLRYGGMRPDRDVLQFDPGLSYGLP 298 (385)
T ss_pred HHHhh--CcCCCEEECCCCc----cCHHHHHHHHhhCCCCEEcCCCcCCHHHHHHHHHhCCccccCCEEEeCchhhCCHH
Confidence 33342 3466667766433 2367777888876554 455577888999998887655 8999987654321
Q ss_pred hhhhhHHHHHHhCCeE
Q 022968 194 IEDDIIPLCRELGIGI 209 (289)
Q Consensus 194 ~~~~~~~~~~~~gi~v 209 (289)
...++.+.|+.+|+.+
T Consensus 299 ~~~kia~lA~a~gi~~ 314 (385)
T cd03326 299 EYLRMLDVLEAHGWSR 314 (385)
T ss_pred HHHHHHHHHHHcCCCC
Confidence 2267999999999984
No 134
>COG3623 SgaU Putative L-xylulose-5-phosphate 3-epimerase [Carbohydrate transport and metabolism]
Probab=43.41 E-value=26 Score=29.96 Aligned_cols=47 Identities=9% Similarity=0.215 Sum_probs=31.1
Q ss_pred CCCcccCccccccccCCCCCCCC--CCHHHHHHHHHH----HHHcCCCeEeCCc
Q 022968 16 SQGLEVSRLGFGCGGLSGIYNKP--LSHEVGCSIIKE----TFNRGITLFDTSD 63 (289)
Q Consensus 16 ~~g~~vs~lg~G~~~~~~~~~~~--~~~~~~~~~l~~----A~~~Gi~~~DtA~ 63 (289)
.+|+.+|.+||.+-+--. +|+. ...+++.+++.. |.+.|||.|--|.
T Consensus 65 etgv~ipSmClSaHRRfP-fGS~D~~~r~~aleiM~KaI~LA~dLGIRtIQLAG 117 (287)
T COG3623 65 ETGVRIPSMCLSAHRRFP-FGSKDEATRQQALEIMEKAIQLAQDLGIRTIQLAG 117 (287)
T ss_pred HhCCCccchhhhhhccCC-CCCCCHHHHHHHHHHHHHHHHHHHHhCceeEeecc
Confidence 588999999998743221 2332 234556666555 5588999998774
No 135
>PF01175 Urocanase: Urocanase; InterPro: IPR023637 Urocanase [] (also known as imidazolonepropionate hydrolase or urocanate hydratase) is the enzyme that catalyzes the second step in the degradation of histidine, the hydration of urocanate into imidazolonepropionate. urocanate + H2O = 4,5-dihydro-4-oxo-5-imidazolepropanoate Urocanase is found in some bacteria (gene hutU), in the liver of many vertebrates and has also been found in the plant Trifolium repens (white clover). Urocanase is a protein of about 60 Kd, it binds tightly to NAD+ and uses it as an electrophil cofactor. A conserved cysteine has been found to be important for the catalytic mechanism and could be involved in the binding of the NAD+. This enzyme is a symmetric homodimer with tightly bound NAD+ cofactors. Each subunit consists of a typical NAD-binding domain inserted into a larger core domain that forms the dimer interface []. This entry represents the Urocanase subunit structural domain.; GO: 0016153 urocanate hydratase activity; PDB: 2V7G_A 1UWK_A 1UWL_B 1W1U_B 2FKN_C 1X87_B.
Probab=43.35 E-value=67 Score=30.74 Aligned_cols=129 Identities=18% Similarity=0.153 Sum_probs=72.3
Q ss_pred HHHHHHHHHcCCCeEe--CCcCcC---CC----ChhHHHHHHHHhc---CCCCCEEEEecccccccCCcc---------c
Q 022968 45 CSIIKETFNRGITLFD--TSDVYG---VD----HDNEIMVGKALKQ---LPRDKIQLATKFGCFMLDGVS---------I 103 (289)
Q Consensus 45 ~~~l~~A~~~Gi~~~D--tA~~Yg---~~----g~se~~lg~~l~~---~~R~~~~I~tK~~~~~~~~~~---------~ 103 (289)
.+-+....+.|+..+- ||-.|- .+ |.-|+++.-+=+. ..+-++||++-+|.....++. .
T Consensus 105 ~e~f~~l~~~GltmYGQMTAGsw~YIG~QGIvqGTyeT~~~aark~~g~~L~Gk~~lTaGLGGMgGAQplA~~m~g~v~l 184 (546)
T PF01175_consen 105 WEHFERLEALGLTMYGQMTAGSWIYIGPQGIVQGTYETFLNAARKHFGGDLAGKLFLTAGLGGMGGAQPLAATMAGGVGL 184 (546)
T ss_dssp HHHHHHHHHTT---B-TTTTTTT---TTHHHHHHHHHHHHHHHHHHSTTS-TT-EEEEE--STTCCHHHHHHHHTT-EEE
T ss_pred HHHHHHHHhccchhhccccccceEEEcccceeehhhHHHHHHHHHhcCCCCcceEEEEecccccccchHHHHHhcCceEE
Confidence 3446667788887764 665552 21 3345444333222 357789999988765432210 0
Q ss_pred CCCCCHHHHHHHHHHHHHHcCCCcccEEeecCCCCCCCHHHHHHHHHHHHHcCccceeecCCCCHHHHHHHHcc---CCc
Q 022968 104 GVKGSPEYVRKCCEASLKRLDVDYIDLYYQHRVDTSVSIEDTMGELKKLVEEGKIKYIGLSEASADTIRRAHAV---HPI 180 (289)
Q Consensus 104 ~~~~~~~~i~~~~~~sL~~L~~~~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~~~~---~~~ 180 (289)
.-..++ .+.-+|+.+.|+|.+. .+++++++..++.+++|+..+||+-..-++.+.++.+. +.+
T Consensus 185 ~vEvd~-------~ri~kR~~~g~ld~~~-------~~ldea~~~~~ea~~~~~~~SIg~~GN~ad~~~~l~~~~i~pDl 250 (546)
T PF01175_consen 185 IVEVDP-------SRIEKRLEQGYLDEVT-------DDLDEALARAKEARAKKEPLSIGLLGNAADLWEELVERGIIPDL 250 (546)
T ss_dssp EEES-H-------HHHHHHHHTTSSSEEE-------SSHHHHHHHHHHHHHTT--EEEEEES-HHHHHHHHHHTT---SE
T ss_pred EEEECH-------HHHHHHHhCCCeeEEc-------CCHHHHHHHHHHhhccCCeeEEEEeccHHHHHHHHHHcCCCCCc
Confidence 011233 3445678888999752 46889999999999999999999998888888888775 233
Q ss_pred eEEeccC
Q 022968 181 TAVQMEY 187 (289)
Q Consensus 181 ~~~q~~~ 187 (289)
..-|...
T Consensus 251 ~tDQTS~ 257 (546)
T PF01175_consen 251 VTDQTSA 257 (546)
T ss_dssp E---SST
T ss_pred ccCCCcc
Confidence 4446654
No 136
>COG1151 6Fe-6S prismane cluster-containing protein [Energy production and conversion]
Probab=43.11 E-value=1.4e+02 Score=29.05 Aligned_cols=94 Identities=16% Similarity=0.162 Sum_probs=52.2
Q ss_pred HHHHHHHHHHHHHcCCCcccEEeecCCC---CCCCHHHHHHHHHHHHHcCccceeec----CCCC--HHHHHHHHccCCc
Q 022968 110 EYVRKCCEASLKRLDVDYIDLYYQHRVD---TSVSIEDTMGELKKLVEEGKIKYIGL----SEAS--ADTIRRAHAVHPI 180 (289)
Q Consensus 110 ~~i~~~~~~sL~~L~~~~iDl~~lh~~~---~~~~~~~~~~~l~~l~~~G~ir~iGv----s~~~--~~~l~~~~~~~~~ 180 (289)
+...+-++..++..+-.+.+ -|-.- ....+.++..-+.+|+++|+||.+.+ ++-. .+.+..+.+..|=
T Consensus 360 ~~~~~vIe~A~e~~~~r~~~---~~~ivvGFs~~~il~a~d~lielI~sGkIKgv~~v~GCd~~~~~~~yvt~~kelipr 436 (576)
T COG1151 360 EDFSEVIEMAIENFKNRKSE---KHKIVVGFSHESILAAADPLIELIASGKIKGVVVVVGCDGLRSGRHYVTLFKELIPR 436 (576)
T ss_pred hhHHHHHHHHHhccCCcccc---cceeEEeecHHHHHHHHHHHHHHHhcCCcceEEEEeeCCCCCCCcccHHHHHHhccc
Confidence 55677788888888777766 22111 11234456778889999999999854 2211 1223333333443
Q ss_pred eEEeccCCCCCcchhhhhHHHHHHhCCe
Q 022968 181 TAVQMEYSLWTREIEDDIIPLCRELGIG 208 (289)
Q Consensus 181 ~~~q~~~~~~~~~~~~~~~~~~~~~gi~ 208 (289)
+++-+...-.... -.-+++|+..||+
T Consensus 437 D~lVLt~GCgk~~--~~~~~vc~~lGIP 462 (576)
T COG1151 437 DILVLTLGCGKYR--FNKADVGDILGIP 462 (576)
T ss_pred ceEEEecccchhh--hhhhccccccCCC
Confidence 4443332222221 2334778888886
No 137
>PRK02901 O-succinylbenzoate synthase; Provisional
Probab=42.78 E-value=2.4e+02 Score=25.48 Aligned_cols=71 Identities=14% Similarity=0.138 Sum_probs=50.2
Q ss_pred HHHHHHHHHcCccc-eeecCCCCHHHHHHHHccCCceEEeccCCCCCcchhhhhHHHHHHhCCeEEEcccCccc
Q 022968 146 MGELKKLVEEGKIK-YIGLSEASADTIRRAHAVHPITAVQMEYSLWTREIEDDIIPLCRELGIGIVAYSPLGRG 218 (289)
Q Consensus 146 ~~~l~~l~~~G~ir-~iGvs~~~~~~l~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~gi~v~a~~pl~~G 218 (289)
++.+.+|+++-.|. +.|=|-++.+.+.+++.....+++|+..+.+-.- .++++.|+++|+.++..+.+..+
T Consensus 173 ~~~la~Lr~~~~vPIA~DEs~~~~~d~~~l~~~~a~dvi~ik~~~~GGi--t~~lkiA~~~gi~v~v~s~~es~ 244 (327)
T PRK02901 173 VEELAELRRRVGVPIAADESIRRAEDPLRVARAGAADVAVLKVAPLGGV--RAALDIAEQIGLPVVVSSALDTS 244 (327)
T ss_pred HHHHHHHHHhCCCCEEeCCCCCCHHHHHHHHHcCCCCEEEeCcchhCCH--HHHHHHHHHcCCcEEEeCCcccH
Confidence 56666666653332 2344556778888888888889999988775432 56788999999999887666544
No 138
>cd01973 Nitrogenase_VFe_beta_like Nitrogenase_VFe_beta -like: Nitrogenase VFe protein, beta subunit like. This group contains proteins similar to the beta subunits of the VFe protein of the vanadium-dependent (V-) nitrogenase. Nitrogenase catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. In addition to V-nitrogenase there is a molybdenum (Mo)-dependent nitrogenase and an iron only (Fe-) nitrogenase. The Mo-nitrogenase is the most widespread and best characterized of these systems. These systems consist of component 1 (VFe protein, FeFe protein or, MoFe protein respectively) and, component 2 (Fe protein). MoFe is an alpha2beta2 tetramer, V-and Fe- nitrogenases are alpha2beta2delta2 hexamers. The alpha and beta subunits of VFe and FeFe are similar to the alpha and beta subunits of MoFe. For MoFe each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe p
Probab=42.66 E-value=3e+02 Score=26.06 Aligned_cols=113 Identities=16% Similarity=0.129 Sum_probs=58.3
Q ss_pred CcCcCCCChhHHHHHHHHhc----CC-CCCEEEEecccccccCCcccCCCCCHHHHHHHHHHHHH-HcCCCcccEEeecC
Q 022968 62 SDVYGVDHDNEIMVGKALKQ----LP-RDKIQLATKFGCFMLDGVSIGVKGSPEYVRKCCEASLK-RLDVDYIDLYYQHR 135 (289)
Q Consensus 62 A~~Yg~~g~se~~lg~~l~~----~~-R~~~~I~tK~~~~~~~~~~~~~~~~~~~i~~~~~~sL~-~L~~~~iDl~~lh~ 135 (289)
.-.|| .|..|-++|++ .+ .+=++|.|-+....- .-|.+.+-+.+++-++ ...--.+.++.+|.
T Consensus 65 d~VfG----G~~~L~~~I~~~~~~~~~p~~I~V~tTC~~eiI-------GDDi~~vv~~~~~~~~~e~~~~~~~vi~v~t 133 (454)
T cd01973 65 SAVFG----GAKRVEEGVLVLARRYPDLRVIPIITTCSTEII-------GDDIEGVIRKLNEALKEEFPDREVHLIPVHT 133 (454)
T ss_pred ceEEC----cHHHHHHHHHHHHHhcCCCCEEEEECCchHhhh-------ccCHHHHHHHHHhhhhhccCCCCCeEEEeeC
Confidence 34677 46677777776 32 234777777543221 1134444444433321 11101467888898
Q ss_pred CCCCCCHH-HHHHHHHHHHH--------cCccceeecCC--CCHHHHHHHHccCCceEEec
Q 022968 136 VDTSVSIE-DTMGELKKLVE--------EGKIKYIGLSE--ASADTIRRAHAVHPITAVQM 185 (289)
Q Consensus 136 ~~~~~~~~-~~~~~l~~l~~--------~G~ir~iGvs~--~~~~~l~~~~~~~~~~~~q~ 185 (289)
|+...... ....+++.+.+ +++|.-||-.+ .+.+.++++++...+.++.+
T Consensus 134 pgF~Gs~~~G~~~a~~ali~~~~~~~~~~~~VNii~~~~~~~D~~ei~~lL~~~Gl~v~~~ 194 (454)
T cd01973 134 PSFKGSMVTGYDEAVRSVVKTIAKKGAPSGKLNVFTGWVNPGDVVELKHYLSEMDVEANIL 194 (454)
T ss_pred CCcCCCHHHHHHHHHHHHHHHhcccCCCCCcEEEECCCCChHHHHHHHHHHHHcCCCEEEe
Confidence 87653322 22233333332 46688786433 33466777777655555543
No 139
>COG2987 HutU Urocanate hydratase [Amino acid transport and metabolism]
Probab=42.47 E-value=56 Score=30.79 Aligned_cols=111 Identities=15% Similarity=0.076 Sum_probs=70.2
Q ss_pred ChhHHHHHHHHhc---CCCCCEEEEecccccccCCcccC--CCCCHHHHHHHHHHHHHHcCCCcccEEeecCCCCCCCHH
Q 022968 69 HDNEIMVGKALKQ---LPRDKIQLATKFGCFMLDGVSIG--VKGSPEYVRKCCEASLKRLDVDYIDLYYQHRVDTSVSIE 143 (289)
Q Consensus 69 g~se~~lg~~l~~---~~R~~~~I~tK~~~~~~~~~~~~--~~~~~~~i~~~~~~sL~~L~~~~iDl~~lh~~~~~~~~~ 143 (289)
|.-|++...+-+. .-+-+++++.-+|.....++... .....=.++-.-.+.-+||.+.|+|. ....++
T Consensus 148 GTyeT~~~~~r~h~~gdL~Gk~~lTaGLGGMgGAQplA~~ma~~v~i~vevd~srI~~Rl~t~y~d~-------~a~~ld 220 (561)
T COG2987 148 GTYETFAEAGRQHFGGDLKGKWVLTAGLGGMGGAQPLAATMAGAVCIAVEVDESRIDKRLRTGYLDE-------IAETLD 220 (561)
T ss_pred chHHHHHHHHHHhcCCCccceEEEecCCCcccccchHHHHhcCceEEEEEeCHHHHHHHHhcchhhh-------hcCCHH
Confidence 4556665544443 35778899888876544321000 00000000111123347888999985 335688
Q ss_pred HHHHHHHHHHHcCccceeecCCCCHHHHHHHHcc-CCceEE--ecc
Q 022968 144 DTMGELKKLVEEGKIKYIGLSEASADTIRRAHAV-HPITAV--QME 186 (289)
Q Consensus 144 ~~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~~~~-~~~~~~--q~~ 186 (289)
|+++..++-.++|+-.+||+-..-++.+.++++. ..||++ |.+
T Consensus 221 eAl~~a~~~~~ag~p~SIgl~GNaaei~~~l~~r~~~pD~vtDQTs 266 (561)
T COG2987 221 EALALAEEATAAGEPISIGLLGNAAEILPELLRRGIRPDLVTDQTS 266 (561)
T ss_pred HHHHHHHHHHhcCCceEEEEeccHHHHHHHHHHcCCCCceeccccc
Confidence 9999999999999999999999989999998876 344543 554
No 140
>PLN02444 HMP-P synthase
Probab=42.09 E-value=2.9e+02 Score=27.02 Aligned_cols=149 Identities=14% Similarity=0.129 Sum_probs=78.8
Q ss_pred CHHHHHHHHHHHHHcCCCe-EeCCcCcCCCChhHHHHHHH-HhcCCCCCEEEEeccccccc--CCcccCCCCCHHHHHHH
Q 022968 40 SHEVGCSIIKETFNRGITL-FDTSDVYGVDHDNEIMVGKA-LKQLPRDKIQLATKFGCFML--DGVSIGVKGSPEYVRKC 115 (289)
Q Consensus 40 ~~~~~~~~l~~A~~~Gi~~-~DtA~~Yg~~g~se~~lg~~-l~~~~R~~~~I~tK~~~~~~--~~~~~~~~~~~~~i~~~ 115 (289)
+.++-.+-+..|.+.|-.. .|-+. .| .-..+-++ |+. ..+=|.| +..... .......+.+.+.+.+.
T Consensus 235 ~ie~EveK~~~A~~~GADTvMDLST-Gg----di~~iR~~Il~~---spvPVGT-VPIYqA~~~~~~~~~~lt~d~~~d~ 305 (642)
T PLN02444 235 SIEEEVYKLQWATMWGADTVMDLST-GR----HIHETREWILRN---SPVPVGT-VPIYQALEKVDGIAENLTWEVFRET 305 (642)
T ss_pred CHHHHHHHHHHHHHcCCCeEeeccC-CC----CHHHHHHHHHHc---CCCCccC-ccHHHHHHHhcCChhhCCHHHHHHH
Confidence 4555566688888988765 46553 22 22233333 332 1122222 111000 00011224667777777
Q ss_pred HHHHHHHcCCCcccEEeecCCCCCCCHHHHHHHHHHHHHcCccceeecCCCCHHHHHHHHccCCceEEeccCCCCCcchh
Q 022968 116 CEASLKRLDVDYIDLYYQHRVDTSVSIEDTMGELKKLVEEGKIKYIGLSEASADTIRRAHAVHPITAVQMEYSLWTREIE 195 (289)
Q Consensus 116 ~~~sL~~L~~~~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~~~~~~~~~~q~~~~~~~~~~~ 195 (289)
+++-.+ +-+|.+-||.-- ..+.++.++ + |..|+-.-.-..+...+-... .=|++...+
T Consensus 306 ieeQae----qGVDfmTIH~Gv-------~~~~v~~~~--~--R~tgIVSRGGSi~a~Wml~~~------kENPlYe~F- 363 (642)
T PLN02444 306 LIEQAE----QGVDYFTIHAGV-------LLRYIPLTA--K--RMTGIVSRGGSIHAKWCLAYH------KENFAYEHW- 363 (642)
T ss_pred HHHHHH----hCCCEEEEChhh-------HHHHHHHHh--C--cccCceeCCcHHHHHHHHHcC------CcCchHHHH-
Confidence 766665 457888899742 344455554 3 677776655544444333211 124444443
Q ss_pred hhhHHHHHHhCCeEEEcccCccccCCCC
Q 022968 196 DDIIPLCRELGIGIVAYSPLGRGFFAGK 223 (289)
Q Consensus 196 ~~~~~~~~~~gi~v~a~~pl~~G~L~~~ 223 (289)
.++++.|++++|.+ .|+.|+-.|.
T Consensus 364 D~ileI~k~YDVtl----SLGDGLRPG~ 387 (642)
T PLN02444 364 DDILDICNQYDIAL----SIGDGLRPGS 387 (642)
T ss_pred HHHHHHHHHhCeee----eccCCcCCCc
Confidence 68999999999998 4566664443
No 141
>PF07994 NAD_binding_5: Myo-inositol-1-phosphate synthase; InterPro: IPR002587 1L-myo-Inositol-1-phosphate synthase (5.5.1.4 from EC) catalyzes the conversion of D-glucose 6-phosphate to 1L-myo-inositol-1-phosphate, the first committed step in the production of all inositol-containing compounds, including phospholipids, either directly or by salvage. The enzyme exists in a cytoplasmic form in a wide range of plants, animals, and fungi. It has also been detected in several bacteria and a chloroplast form is observed in alga and higher plants. Inositol phosphates play an important role in signal transduction. In Saccharomyces cerevisiae (Baker's yeast), the transcriptional regulation of the INO1 gene has been studied in detail [] and its expression is sensitive to the availability of phospholipid precursors as well as growth phase. The regulation of the structural gene encoding 1L-myo-inositol-1-phosphate synthase has also been analyzed at the transcriptional level in the aquatic angiosperm, Spirodela polyrrhiza (Giant duckweed) and the halophyte, Mesembryanthemum crystallinum (Common ice plant) [].; GO: 0004512 inositol-3-phosphate synthase activity, 0006021 inositol biosynthetic process, 0008654 phospholipid biosynthetic process; PDB: 1GR0_A 1P1K_B 1LA2_B 1RM0_B 1P1I_B 1JKF_A 1P1F_A 1P1J_B 1JKI_B 1P1H_A ....
Probab=42.05 E-value=62 Score=28.79 Aligned_cols=132 Identities=20% Similarity=0.218 Sum_probs=75.6
Q ss_pred HHHHHHHHHHHHHHcCCCcccEEeecCCCCCC----CHHHHHHHHHHHHHcCccceeecCCCCHHHHHH--HHccCCce-
Q 022968 109 PEYVRKCCEASLKRLDVDYIDLYYQHRVDTSV----SIEDTMGELKKLVEEGKIKYIGLSEASADTIRR--AHAVHPIT- 181 (289)
Q Consensus 109 ~~~i~~~~~~sL~~L~~~~iDl~~lh~~~~~~----~~~~~~~~l~~l~~~G~ir~iGvs~~~~~~l~~--~~~~~~~~- 181 (289)
.+.+++.+.+-+++.++|++=++.+-.-+... ....++++|++..+++.-. .++..+-. ++. ....
T Consensus 131 ~e~~~~DI~~f~~~~~~d~vVvvn~asTE~~~~~~~~~~~t~~~l~~al~~~~~~------~~aS~~YA~AAl~-~g~~f 203 (295)
T PF07994_consen 131 VEQIREDIRDFKKENGLDRVVVVNVASTERYIPVIPGVHDTLEALEKALDENDPE------ISASMLYAYAALE-AGVPF 203 (295)
T ss_dssp HHHHHHHHHHHHHHTT-SCEEEEE-SSCC-S---CCCCCSSHHHHHHHHHTT-TT------HHHHHHHHHHHHH-TTEEE
T ss_pred HHHHHHHHHHHHHHhCCCcEEEEECCCCCCCCCCCccccCCHHHHHHHhhcCCCc------CChHHHHHHHHHH-CCCCe
Confidence 46788999999999998855444443332211 2235788888888875532 12232222 222 2222
Q ss_pred EEeccCCCCCcchhhhhHHHHHHhCCeEEEc---ccCccccCCCCCCCCCCCcchhhhcCCCCCccchHHHHHHHHHHHH
Q 022968 182 AVQMEYSLWTREIEDDIIPLCRELGIGIVAY---SPLGRGFFAGKAVVESLPSESILAMHPRFSGENLEKNKLLYTRLET 258 (289)
Q Consensus 182 ~~q~~~~~~~~~~~~~~~~~~~~~gi~v~a~---~pl~~G~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 258 (289)
+|=.+-+..+ ...+.+.|+++|+.+..- +|++. ...-.+-++.+
T Consensus 204 vN~tP~~~a~---~P~l~ela~~~gvpi~GdD~KT~lAA------------------------------plvlDLirl~~ 250 (295)
T PF07994_consen 204 VNGTPSNIAD---DPALVELAEEKGVPIAGDDGKTPLAA------------------------------PLVLDLIRLAK 250 (295)
T ss_dssp EE-SSSTTTT---SHHHHHHHHHHTEEEEESSBS-HHHH------------------------------HHHHHHHHHHH
T ss_pred EeccCccccC---CHHHHHHHHHcCCCeecchHhhhhhh------------------------------HHHHHHHHHHH
Confidence 2222322221 258999999999997631 12222 23344457889
Q ss_pred HHHHhCCCHHHHHHHHHHhCCC
Q 022968 259 LAAKYGCTTPQLALAWLLHQGD 280 (289)
Q Consensus 259 ia~~~g~s~~q~al~w~l~~~~ 280 (289)
+|.+.|..-.+-.++|..-.|.
T Consensus 251 la~r~g~~Gv~~~ls~ffK~P~ 272 (295)
T PF07994_consen 251 LALRRGMGGVQEWLSFFFKSPM 272 (295)
T ss_dssp HHHHTTS-EEHHHHHHHBSS-T
T ss_pred HHHHcCCCChhHHHHHHhcCCC
Confidence 9999998878888999888885
No 142
>COG0001 HemL Glutamate-1-semialdehyde aminotransferase [Coenzyme metabolism]
Probab=41.95 E-value=3.1e+02 Score=25.91 Aligned_cols=141 Identities=19% Similarity=0.242 Sum_probs=79.0
Q ss_pred CHHHHHHHHHHHHHcCCCeEeCCcCcCCCChhHHHHHHHHhc-CCC-CCEEEEecccccccCCcccCCCCCHHHHHHHHH
Q 022968 40 SHEVGCSIIKETFNRGITLFDTSDVYGVDHDNEIMVGKALKQ-LPR-DKIQLATKFGCFMLDGVSIGVKGSPEYVRKCCE 117 (289)
Q Consensus 40 ~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~~g~se~~lg~~l~~-~~R-~~~~I~tK~~~~~~~~~~~~~~~~~~~i~~~~~ 117 (289)
......+.+..+++.|. .||.+.+.|..+++.|.+ .+. +.+-. ++.| -+..+-+++
T Consensus 70 ~~p~V~~Av~~~l~~G~-------~fg~Pte~Ei~~Aell~~~~p~~e~vrf-vnSG--------------TEAtmsAiR 127 (432)
T COG0001 70 AHPAVVEAVQEQLERGL-------SFGAPTELEVELAELLIERVPSIEKVRF-VNSG--------------TEATMSAIR 127 (432)
T ss_pred CCHHHHHHHHHHHHhcC-------CCCCCCHHHHHHHHHHHHhcCcccEEEE-ecch--------------hHHHHHHHH
Confidence 35668999999999996 677767789999999887 344 33333 3222 244566666
Q ss_pred HHHHHcCCCcccEEeecCCCCCCCHHHHHHHHHHHHHcC-------ccceeecC-----------CCCHHHHHHHHccC-
Q 022968 118 ASLKRLDVDYIDLYYQHRVDTSVSIEDTMGELKKLVEEG-------KIKYIGLS-----------EASADTIRRAHAVH- 178 (289)
Q Consensus 118 ~sL~~L~~~~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G-------~ir~iGvs-----------~~~~~~l~~~~~~~- 178 (289)
-...--|.+.|=.|-=+....... -|++.| .-.+-||- -.+.+.++++.+..
T Consensus 128 lARa~TgR~kIikF~G~YHG~~D~---------~lv~agsg~~t~g~p~s~Gvp~~~a~~ti~~~yND~~al~~~~~~~g 198 (432)
T COG0001 128 LARAYTGRDKIIKFEGCYHGHSDS---------LLVKAGSGAATLGSPSSPGVPADVAKHTLVLPYNDLEALEEAFEEYG 198 (432)
T ss_pred HHHHhhCCCeEEEEcCCCCCCccH---------HHhhcCcCcccCCCCCCCCCChhhhccEEEecCCCHHHHHHHHHHcC
Confidence 666666666554332221111000 122222 11222221 12346666666653
Q ss_pred -CceEE-----eccCCCCCcc--hhhhhHHHHHHhCCeEEE
Q 022968 179 -PITAV-----QMEYSLWTRE--IEDDIIPLCRELGIGIVA 211 (289)
Q Consensus 179 -~~~~~-----q~~~~~~~~~--~~~~~~~~~~~~gi~v~a 211 (289)
.+..+ +-...++.+. ....+.+.|+++|+-+|-
T Consensus 199 ~~IAaVIvEPv~gn~g~i~p~~~Fl~~Lr~lt~e~G~lLI~ 239 (432)
T COG0001 199 DDIAAVIVEPVAGNMGVVPPEPGFLEGLRELTEEHGALLIF 239 (432)
T ss_pred CcEEEEEeccccCCCCCCCCCHHHHHHHHHHHHHcCcEEEE
Confidence 33333 3344444443 237899999999998773
No 143
>PRK14456 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=41.81 E-value=1.5e+02 Score=27.32 Aligned_cols=79 Identities=11% Similarity=0.163 Sum_probs=51.2
Q ss_pred CHHHHHHHHHH-HHHcC---ccceeecC--CCCHHH---HHHHHccCCceEEeccCCCCCcch--------hhhhHHHHH
Q 022968 141 SIEDTMGELKK-LVEEG---KIKYIGLS--EASADT---IRRAHAVHPITAVQMEYSLWTREI--------EDDIIPLCR 203 (289)
Q Consensus 141 ~~~~~~~~l~~-l~~~G---~ir~iGvs--~~~~~~---l~~~~~~~~~~~~q~~~~~~~~~~--------~~~~~~~~~ 203 (289)
+++++++++.+ +.+.| +|+++=+. |.+.++ +.+++...+..++-++||++.... -..+.+..+
T Consensus 260 ~l~~l~~~i~~~~~~~g~~V~ieyvLI~GvNDs~eda~~L~~~l~~~~~~VnlIpyn~~~~~~~~~ps~e~i~~F~~~L~ 339 (368)
T PRK14456 260 PLDELREALIGYASKTGEPVTLVYMLLEGINDSPEDARKLIRFASRFFCKINLIDYNSIVNIKFEPVCSSTRERFRDRLL 339 (368)
T ss_pred CHHHHHHHHHHHHHhcCCeEEEEEEEEcCCCCCHHHHHHHHHHHhcCCCeeEEeeeccCCCCCCCCCCHHHHHHHHHHHH
Confidence 56788888875 45556 25555443 344434 444555455677888999875421 145777788
Q ss_pred HhCCeEEEcccCcccc
Q 022968 204 ELGIGIVAYSPLGRGF 219 (289)
Q Consensus 204 ~~gi~v~a~~pl~~G~ 219 (289)
++|+.+..+...+.-+
T Consensus 340 ~~Gi~vtvR~~~G~di 355 (368)
T PRK14456 340 DAGLQVTVRKSYGTTI 355 (368)
T ss_pred HCCCcEEeeCCCCcch
Confidence 9999999988887544
No 144
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=41.55 E-value=2.7e+02 Score=25.18 Aligned_cols=101 Identities=18% Similarity=0.199 Sum_probs=54.5
Q ss_pred CCCCHHHHHHHHHHHHHHcCCCcccEEee--------c-CCCCCCCHHHHHHHHHHHHHcC-ccceeecC---CCCHHHH
Q 022968 105 VKGSPEYVRKCCEASLKRLDVDYIDLYYQ--------H-RVDTSVSIEDTMGELKKLVEEG-KIKYIGLS---EASADTI 171 (289)
Q Consensus 105 ~~~~~~~i~~~~~~sL~~L~~~~iDl~~l--------h-~~~~~~~~~~~~~~l~~l~~~G-~ir~iGvs---~~~~~~l 171 (289)
+.++.+.+.+- -+.|.+.|+++|++-.. . .+.. .+ .|+.++++.+.- ..+...+. ..+.+.+
T Consensus 19 ~~f~~~~~~~i-a~~Ld~aGV~~IEvg~g~gl~g~s~~~G~~~-~~---~~e~i~~~~~~~~~~~~~~ll~pg~~~~~dl 93 (333)
T TIGR03217 19 HQFTIEQVRAI-AAALDEAGVDAIEVTHGDGLGGSSFNYGFSA-HT---DLEYIEAAADVVKRAKVAVLLLPGIGTVHDL 93 (333)
T ss_pred CcCCHHHHHHH-HHHHHHcCCCEEEEecCCCCCCccccCCCCC-CC---hHHHHHHHHHhCCCCEEEEEeccCccCHHHH
Confidence 34566665544 46688999999998521 1 1111 12 233333333322 23333232 1246677
Q ss_pred HHHHccCCceEEeccCCCCCcchhhhhHHHHHHhCCeEEE
Q 022968 172 RRAHAVHPITAVQMEYSLWTREIEDDIIPLCRELGIGIVA 211 (289)
Q Consensus 172 ~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~gi~v~a 211 (289)
+.+.+. .++.+.+..+.-.-+...+.+++++++|..+..
T Consensus 94 ~~a~~~-gvd~iri~~~~~e~d~~~~~i~~ak~~G~~v~~ 132 (333)
T TIGR03217 94 KAAYDA-GARTVRVATHCTEADVSEQHIGMARELGMDTVG 132 (333)
T ss_pred HHHHHC-CCCEEEEEeccchHHHHHHHHHHHHHcCCeEEE
Confidence 777664 445555544433323336788899999987654
No 145
>TIGR00676 fadh2 5,10-methylenetetrahydrofolate reductase, prokaryotic form. This protein is an FAD-containing flavoprotein.
Probab=41.44 E-value=2.4e+02 Score=24.57 Aligned_cols=155 Identities=12% Similarity=0.091 Sum_probs=81.6
Q ss_pred HHHHHHHHHHHHcCCCeEeCCcCcCCCChhHH--HHHHHHhc-CCCCCE-EEEecccccccCCcccCCCCCHHHHHHHHH
Q 022968 42 EVGCSIIKETFNRGITLFDTSDVYGVDHDNEI--MVGKALKQ-LPRDKI-QLATKFGCFMLDGVSIGVKGSPEYVRKCCE 117 (289)
Q Consensus 42 ~~~~~~l~~A~~~Gi~~~DtA~~Yg~~g~se~--~lg~~l~~-~~R~~~-~I~tK~~~~~~~~~~~~~~~~~~~i~~~~~ 117 (289)
+...+.++.--+.|..++..++.-+. +..+. .+++.|++ ..-+-+ .++.. +.++..+...+.
T Consensus 15 ~~l~~~~~~l~~~~pd~isvT~~~~~-~~~~~t~~~a~~l~~~~g~~~i~Hlt~r-------------~~n~~~l~~~L~ 80 (272)
T TIGR00676 15 ENLWETVDRLSPLDPDFVSVTYGAGG-STRDRTVRIVRRIKKETGIPTVPHLTCI-------------GATREEIREILR 80 (272)
T ss_pred HHHHHHHHHHhcCCCCEEEeccCCCC-CcHHHHHHHHHHHHHhcCCCeeEEeeec-------------CCCHHHHHHHHH
Confidence 44555566656778999998876552 22222 33444542 111111 11111 246667777775
Q ss_pred HHHHHcCCCcccEEeecC-CC------CCCCHHHHHHHHHHHHHcCccceeecCCCC--------H-HHHHHHHcc----
Q 022968 118 ASLKRLDVDYIDLYYQHR-VD------TSVSIEDTMGELKKLVEEGKIKYIGLSEAS--------A-DTIRRAHAV---- 177 (289)
Q Consensus 118 ~sL~~L~~~~iDl~~lh~-~~------~~~~~~~~~~~l~~l~~~G~ir~iGvs~~~--------~-~~l~~~~~~---- 177 (289)
. +..+|++ +++.|-. |. ....+..+.+.++.+++..---+||+..++ . .+++.+.+.
T Consensus 81 ~-~~~~Gi~--nvL~l~GD~~~~~~~~~~~~f~~a~~Li~~i~~~~~~f~ig~a~~Peghp~~~~~~~~~~~L~~K~~aG 157 (272)
T TIGR00676 81 E-YRELGIR--HILALRGDPPKGEGTPTPGGFNYASELVEFIRNEFGDFDIGVAAYPEKHPEAPNLEEDIENLKRKVDAG 157 (272)
T ss_pred H-HHHCCCC--EEEEeCCCCCCCCCCCCCCCCCCHHHHHHHHHHhcCCeeEEEEeCCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 4 3777754 3443432 21 112233455555555554223577776532 1 233333222
Q ss_pred CCceEEeccCCCCCcchhhhhHHHHHHhCCeEEEcccCccccC
Q 022968 178 HPITAVQMEYSLWTREIEDDIIPLCRELGIGIVAYSPLGRGFF 220 (289)
Q Consensus 178 ~~~~~~q~~~~~~~~~~~~~~~~~~~~~gi~v~a~~pl~~G~L 220 (289)
..+.+-|.-|+.- .-.++++.|++.|+.+ |+--|++
T Consensus 158 A~f~iTQ~~fd~~---~~~~~~~~~~~~gi~~----PIi~Gi~ 193 (272)
T TIGR00676 158 ADYAITQLFFDND---DYYRFVDRCRAAGIDV----PIIPGIM 193 (272)
T ss_pred CCeEeeccccCHH---HHHHHHHHHHHcCCCC----CEecccC
Confidence 4467778877762 2257888999998765 5555654
No 146
>PHA02128 hypothetical protein
Probab=41.30 E-value=90 Score=23.14 Aligned_cols=69 Identities=16% Similarity=0.293 Sum_probs=48.0
Q ss_pred HHHHHHHHHHHcCccceeecCCCCHHHHHHHHc-----------------cCC-ceEE---eccCCCCCcchhhhhHHHH
Q 022968 144 DTMGELKKLVEEGKIKYIGLSEASADTIRRAHA-----------------VHP-ITAV---QMEYSLWTREIEDDIIPLC 202 (289)
Q Consensus 144 ~~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~~~-----------------~~~-~~~~---q~~~~~~~~~~~~~~~~~~ 202 (289)
.++....++..+|-+|-|-+...+..++++... ..| +.+. .-+|.+-.+....++.+|+
T Consensus 61 gl~~lane~~aqgg~r~itmn~ankrhv~dmv~~~wrgdi~ist~selt~~cp~vkflmideseytltsrh~rqeiydwa 140 (151)
T PHA02128 61 GLLHLANEVSAQGGARIITMNSANKRHVQDMVSYQWRGDIRISTISELTDRCPKVKFLMIDESEYTLTSRHQRQEIYDWA 140 (151)
T ss_pred hHHHHHHHHHhcCCeEEEEeccchhhHHHHHhcccccCceEEeeHHHHhccCCeeEEEEEcchhceecchhhHHHHHhhc
Confidence 567777889999999999887776666655432 122 2222 3467776665557899999
Q ss_pred HHhCCeEEEc
Q 022968 203 RELGIGIVAY 212 (289)
Q Consensus 203 ~~~gi~v~a~ 212 (289)
-.||+.++.+
T Consensus 141 gthgvefvim 150 (151)
T PHA02128 141 GTHGVEFVIM 150 (151)
T ss_pred ccCceEEEEe
Confidence 9999998754
No 147
>COG1751 Uncharacterized conserved protein [Function unknown]
Probab=41.30 E-value=95 Score=24.77 Aligned_cols=73 Identities=12% Similarity=0.073 Sum_probs=44.3
Q ss_pred CHHHHHHHHHHHHHcCCCeEeCCcCcCCCChhHHHHHHHHhcCCCCCEEEEecc-cccccCCcccCCCCCHHHHHHHHHH
Q 022968 40 SHEVGCSIIKETFNRGITLFDTSDVYGVDHDNEIMVGKALKQLPRDKIQLATKF-GCFMLDGVSIGVKGSPEYVRKCCEA 118 (289)
Q Consensus 40 ~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~~g~se~~lg~~l~~~~R~~~~I~tK~-~~~~~~~~~~~~~~~~~~i~~~~~~ 118 (289)
.++...-.+++|-+.||.+|=.|..||. +-..+-+.+.. . =+++++|.- |.... +.-.+.+.+++
T Consensus 12 T~~tle~a~erA~elgik~~vVAS~tG~---tA~k~lemveg-~-lkvVvVthh~Gf~e~---------g~~e~~~E~~~ 77 (186)
T COG1751 12 TDETLEIAVERAKELGIKHIVVASSTGY---TALKALEMVEG-D-LKVVVVTHHAGFEEK---------GTQEMDEEVRK 77 (186)
T ss_pred hHHHHHHHHHHHHhcCcceEEEEecccH---HHHHHHHhccc-C-ceEEEEEeecccccC---------CceecCHHHHH
Confidence 3444566677788999999999999984 44444444442 2 235555543 33321 22234567788
Q ss_pred HHHHcCCC
Q 022968 119 SLKRLDVD 126 (289)
Q Consensus 119 sL~~L~~~ 126 (289)
-|+..|.+
T Consensus 78 ~L~erGa~ 85 (186)
T COG1751 78 ELKERGAK 85 (186)
T ss_pred HHHHcCce
Confidence 88888854
No 148
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=40.83 E-value=2.2e+02 Score=24.46 Aligned_cols=22 Identities=23% Similarity=0.460 Sum_probs=18.4
Q ss_pred hhhHHHHHHhCCeEEEcccCcc
Q 022968 196 DDIIPLCRELGIGIVAYSPLGR 217 (289)
Q Consensus 196 ~~~~~~~~~~gi~v~a~~pl~~ 217 (289)
.++.+.++++|+.+.++.|...
T Consensus 50 ~~l~~~~~~~gl~v~s~~~~~~ 71 (275)
T PRK09856 50 KQIKALAQTYQMPIIGYTPETN 71 (275)
T ss_pred HHHHHHHHHcCCeEEEecCccc
Confidence 6788899999999999887654
No 149
>PRK14453 chloramphenicol/florfenicol resistance protein; Provisional
Probab=40.83 E-value=2.8e+02 Score=25.24 Aligned_cols=94 Identities=16% Similarity=0.259 Sum_probs=56.6
Q ss_pred CcccEEe-ecCCCCC-----------CCHHHHHHHHHHHHH-cCc---cceeecC--CCCHHHHHHH---HccC-----C
Q 022968 126 DYIDLYY-QHRVDTS-----------VSIEDTMGELKKLVE-EGK---IKYIGLS--EASADTIRRA---HAVH-----P 179 (289)
Q Consensus 126 ~~iDl~~-lh~~~~~-----------~~~~~~~~~l~~l~~-~G~---ir~iGvs--~~~~~~l~~~---~~~~-----~ 179 (289)
.++|+.+ ||.+++. .+++++++++.+..+ .|. |+++=+. |.+.+.++++ +... .
T Consensus 203 ~~v~LalSLha~dd~~r~~l~pi~~~~~L~~ll~~~~~~l~~~~~~V~iry~LI~GvNDs~e~a~~L~~~lk~l~~~~~~ 282 (347)
T PRK14453 203 PQVNLTFSLHSPFESQRSELMPINKRFPLNEVMKTLDEHIRHTGRKVYIAYIMLEGVNDSKEHAEAVVGLLRNRGSWEHL 282 (347)
T ss_pred cCcCEEEEecCCCHHHHHHhcCccccccHHHHHHHHHHHHHhcCCcEEEEEEeECCCCCCHHHHHHHHHHHhhccccCCc
Confidence 3577754 7877442 345666776665554 443 4454332 3444454444 3322 3
Q ss_pred ceEEeccCCCCCcc------h----hhhhHHHHHHhCCeEEEcccCcccc
Q 022968 180 ITAVQMEYSLWTRE------I----EDDIIPLCRELGIGIVAYSPLGRGF 219 (289)
Q Consensus 180 ~~~~q~~~~~~~~~------~----~~~~~~~~~~~gi~v~a~~pl~~G~ 219 (289)
..++-++||++... + -..+.+..+++|+.+..+...+.-+
T Consensus 283 ~~VnLIPyn~~~~~~~~~~~ps~e~v~~f~~~L~~~Gi~vtiR~~~G~di 332 (347)
T PRK14453 283 YHVNLIPYNSTDKTPFKFQSSSAGQIKQFCSTLKSAGISVTVRTQFGSDI 332 (347)
T ss_pred ceEEEecCCCCCCCCccCCCCCHHHHHHHHHHHHHCCCcEEEeCCCCCch
Confidence 56788899986432 1 1457778889999999888887654
No 150
>PF14502 HTH_41: Helix-turn-helix domain
Probab=40.82 E-value=31 Score=21.63 Aligned_cols=30 Identities=27% Similarity=0.351 Sum_probs=24.7
Q ss_pred HHHHHHHHHHhCCC--HHHHHHHHHHhCCCCe
Q 022968 253 YTRLETLAAKYGCT--TPQLALAWLLHQGDDI 282 (289)
Q Consensus 253 ~~~l~~ia~~~g~s--~~q~al~w~l~~~~v~ 282 (289)
++.+.+++++++++ ..|-||+++-..+.|.
T Consensus 6 i~tI~e~~~~~~vs~GtiQ~Alk~Le~~gaI~ 37 (48)
T PF14502_consen 6 IPTISEYSEKFGVSRGTIQNALKFLEENGAIK 37 (48)
T ss_pred cCCHHHHHHHhCcchhHHHHHHHHHHHCCcEE
Confidence 35788899999987 5799999999988754
No 151
>TIGR03821 AblA_like_1 lysine-2,3-aminomutase-related protein. Members of this protein form a distinctive clade, homologous to lysine-2,3-aminomutase (of Bacillus, Clostridium, and methanogenic archaea) and likely similar in function. Members of this family are found in E. coli, Buchnera, Yersinia, etc.
Probab=40.79 E-value=2.7e+02 Score=24.98 Aligned_cols=90 Identities=17% Similarity=0.088 Sum_probs=52.2
Q ss_pred EEeecCCCCCCCHH-HHHHHHHHHHHcCccceeecCC----CCHHH----HHHHHccCCceEE-eccCCCCC--cchhhh
Q 022968 130 LYYQHRVDTSVSIE-DTMGELKKLVEEGKIKYIGLSE----ASADT----IRRAHAVHPITAV-QMEYSLWT--REIEDD 197 (289)
Q Consensus 130 l~~lh~~~~~~~~~-~~~~~l~~l~~~G~ir~iGvs~----~~~~~----l~~~~~~~~~~~~-q~~~~~~~--~~~~~~ 197 (289)
-+.+-.-|+....+ ...+.++.|..-..++.+|+.+ ..+.. +.+.++...+..+ ++.+|-.. .+...+
T Consensus 145 ~VvltGGEPL~~~d~~L~~ll~~l~~i~~~~~iri~tr~~~~~p~rit~el~~~L~~~~~~~~~~~h~dh~~Ei~d~~~~ 224 (321)
T TIGR03821 145 EVILSGGDPLMAKDHRLDWLLNLLEQIPHLKRLRIHTRLPVVIPDRITSGLCDLLANSRLQTVLVVHINHANEIDAEVAD 224 (321)
T ss_pred EEEEeCcccccCCchHHHHHHHHHHhCCCCcEEEEecCcceeeHHHhhHHHHHHHHhcCCcEEEEeeCCChHhCcHHHHH
Confidence 34444444443222 2556777777778888888764 32222 2223333333333 45665321 122256
Q ss_pred hHHHHHHhCCeEEEcccCcccc
Q 022968 198 IIPLCRELGIGIVAYSPLGRGF 219 (289)
Q Consensus 198 ~~~~~~~~gi~v~a~~pl~~G~ 219 (289)
-++.+++.|+.+...+++..|+
T Consensus 225 ai~~L~~~Gi~v~~qtvllkgi 246 (321)
T TIGR03821 225 ALAKLRNAGITLLNQSVLLRGV 246 (321)
T ss_pred HHHHHHHcCCEEEecceeeCCC
Confidence 7888899999999999998875
No 152
>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF). Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.
Probab=40.25 E-value=2.3e+02 Score=23.99 Aligned_cols=65 Identities=11% Similarity=0.057 Sum_probs=33.2
Q ss_pred HHHHHcCCCcccEEeecCCCCCCCHH-HHHHHHHHHHHcCccceeecCCC-CHHHHHHHHccCCceEEec
Q 022968 118 ASLKRLDVDYIDLYYQHRVDTSVSIE-DTMGELKKLVEEGKIKYIGLSEA-SADTIRRAHAVHPITAVQM 185 (289)
Q Consensus 118 ~sL~~L~~~~iDl~~lh~~~~~~~~~-~~~~~l~~l~~~G~ir~iGvs~~-~~~~l~~~~~~~~~~~~q~ 185 (289)
+.++.+| +|.+.+|..+...... --|+.+.++++.-.+.-+..... +++.+.++++....+.+.+
T Consensus 156 ~~l~~~G---~d~i~v~~i~~~g~~~g~~~~~i~~i~~~~~~pvia~GGi~~~~di~~~l~~~g~dgv~v 222 (243)
T cd04731 156 KEVEELG---AGEILLTSMDRDGTKKGYDLELIRAVSSAVNIPVIASGGAGKPEHFVEAFEEGGADAALA 222 (243)
T ss_pred HHHHHCC---CCEEEEeccCCCCCCCCCCHHHHHHHHhhCCCCEEEeCCCCCHHHHHHHHHhCCCCEEEE
Confidence 3445566 4556666654321111 13555666666545555554433 4666766666544444444
No 153
>TIGR01927 menC_gamma/gm+ o-succinylbenzoic acid (OSB) synthetase. This model describes the enzyme o-succinylbenzoic acid synthetase (menC) that is involved in one of the steps of the menaquinone biosynthesis pathway. It takes SHCHC and makes it into 2-succinylbenzoate. Included in this model are gamma proteobacteria and archaea. Many of the com-names of the proteins identified by the model are identified as O-succinylbenzoyl-CoA synthase in error.
Probab=40.25 E-value=2.7e+02 Score=24.76 Aligned_cols=86 Identities=10% Similarity=-0.001 Sum_probs=56.1
Q ss_pred ccEEeecCCCCCCCHHHHHHHHHHHHHcCcc-ceeecCCCCHHHHHHHHccCCceEEeccCCCCCcc-hhhhhHHHHHHh
Q 022968 128 IDLYYQHRVDTSVSIEDTMGELKKLVEEGKI-KYIGLSEASADTIRRAHAVHPITAVQMEYSLWTRE-IEDDIIPLCREL 205 (289)
Q Consensus 128 iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~i-r~iGvs~~~~~~l~~~~~~~~~~~~q~~~~~~~~~-~~~~~~~~~~~~ 205 (289)
.++.++..|-+. . +.+..|.+.-.+ -..|=|-++.+.+..+++....+++|+.....-.- ...++.+.|+.+
T Consensus 183 ~~i~~iEqP~~~---~---~~~~~l~~~~~~Pia~dEs~~~~~d~~~~~~~~~~d~i~ik~~~~GGi~~~~~i~~~a~~~ 256 (307)
T TIGR01927 183 GRIAFLEEPLPD---A---DEMSAFSEATGTAIALDESLWELPQLADEYGPGWRGALVIKPAIIGSPAKLRDLAQKAHRL 256 (307)
T ss_pred CCceEEeCCCCC---H---HHHHHHHHhCCCCEEeCCCcCChHHHHHHHhcCCCceEEECchhcCCHHHHHHHHHHHHHc
Confidence 355555555321 1 455566555322 23444667788888888877788888887754321 226799999999
Q ss_pred CCeEEEcccCcccc
Q 022968 206 GIGIVAYSPLGRGF 219 (289)
Q Consensus 206 gi~v~a~~pl~~G~ 219 (289)
|+.++..+.+..|+
T Consensus 257 gi~~~~~~~~es~i 270 (307)
T TIGR01927 257 GLQAVFSSVFESSI 270 (307)
T ss_pred CCCEEEECccchHH
Confidence 99999877666554
No 154
>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=39.86 E-value=2.7e+02 Score=24.71 Aligned_cols=40 Identities=15% Similarity=0.124 Sum_probs=21.2
Q ss_pred HHHHHHHHHcCccceeecCCCC-HHHHHHHHccCCceEEec
Q 022968 146 MGELKKLVEEGKIKYIGLSEAS-ADTIRRAHAVHPITAVQM 185 (289)
Q Consensus 146 ~~~l~~l~~~G~ir~iGvs~~~-~~~l~~~~~~~~~~~~q~ 185 (289)
++.+..+++.=.+--++..+.. .+..+++++....|.+++
T Consensus 270 ~~~~~~ir~~~~iPVi~~Ggi~t~~~a~~~l~~g~aD~V~i 310 (327)
T cd02803 270 LELAEKIKKAVKIPVIAVGGIRDPEVAEEILAEGKADLVAL 310 (327)
T ss_pred HHHHHHHHHHCCCCEEEeCCCCCHHHHHHHHHCCCCCeeee
Confidence 4444555554445555555543 666666666545555544
No 155
>TIGR00035 asp_race aspartate racemase.
Probab=39.80 E-value=1.1e+02 Score=25.86 Aligned_cols=64 Identities=14% Similarity=0.101 Sum_probs=45.9
Q ss_pred CCHHHHHHHHHHHHHHcCCCcccEEeecCCCCC------------CCHHHHHHHHHHHHHcCccceeecCCCCHHHH
Q 022968 107 GSPEYVRKCCEASLKRLDVDYIDLYYQHRVDTS------------VSIEDTMGELKKLVEEGKIKYIGLSEASADTI 171 (289)
Q Consensus 107 ~~~~~i~~~~~~sL~~L~~~~iDl~~lh~~~~~------------~~~~~~~~~l~~l~~~G~ir~iGvs~~~~~~l 171 (289)
.+.+..++-++..-.+.+.++++.+.+++|+.. .....+.+.++.|.+.| +..|-+..+++...
T Consensus 14 at~~~~~~i~~~~~a~~d~~~~~~i~~~~~~~~dr~~~~~~~~~~~~~~~l~~~~~~L~~~g-~d~iviaCNTah~~ 89 (229)
T TIGR00035 14 ATAELFRRINEKTKAKRDQEHPAEVLFNNPNIPDRTAYILGRGEDRPRPILIDIAVKLENAG-ADFIIMPCNTAHKF 89 (229)
T ss_pred HHHHHHHHHHHHhHHhcCCCCCceeeeeCCCHHHHHHHHhcCCcchHHHHHHHHHHHHHHcC-CCEEEECCccHHHH
Confidence 456677777777777899999999999998531 12234567777777654 79999987776653
No 156
>TIGR03247 glucar-dehydr glucarate dehydratase. Glucarate dehydratase converts D-glucarate (and L-idarate, a stereoisomer) to 5-dehydro-4-deoxyglucarate which is subsequently acted on by GarL, tartronate semialdehyde reductase and glycerate kinase (, GenProp0716). The E. coli enzyme has been well-characterized.
Probab=39.72 E-value=3.3e+02 Score=25.70 Aligned_cols=156 Identities=12% Similarity=0.084 Sum_probs=85.1
Q ss_pred CHHHHHHHHHHHHH-cCCCeEeCCcCcCCCChhHHHHHHHHhcCCCCCEEEEecccccccCCcccCCCCCHHHHHHHHHH
Q 022968 40 SHEVGCSIIKETFN-RGITLFDTSDVYGVDHDNEIMVGKALKQLPRDKIQLATKFGCFMLDGVSIGVKGSPEYVRKCCEA 118 (289)
Q Consensus 40 ~~~~~~~~l~~A~~-~Gi~~~DtA~~Yg~~g~se~~lg~~l~~~~R~~~~I~tK~~~~~~~~~~~~~~~~~~~i~~~~~~ 118 (289)
+.++..+....+++ .|++.|=.--.-.+ +..+...=+++++.- +++.|..=.. ..++.+... +
T Consensus 180 ~~e~~~~~a~~~~~~~Gf~a~KiKvG~~~-~~~Di~~v~avRea~-~d~~L~vDAN----------~~wt~~~Ai----~ 243 (441)
T TIGR03247 180 TPEAVVRLAEAAYDRYGFRDFKLKGGVLR-GEEEIEAVTALAKRF-PQARITLDPN----------GAWSLDEAI----A 243 (441)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEecCCCC-hHHHHHHHHHHHHhC-CCCeEEEECC----------CCCCHHHHH----H
Confidence 45556666666665 59998743110011 112222334455422 3443333221 124444332 3
Q ss_pred HHHHcCCCcccEEeecCCCCCCCHHHHHHHHHHHHHcCccc-eeecCCCCHHHHHHHHccCCceEEeccCCCCCcchhhh
Q 022968 119 SLKRLDVDYIDLYYQHRVDTSVSIEDTMGELKKLVEEGKIK-YIGLSEASADTIRRAHAVHPITAVQMEYSLWTREIEDD 197 (289)
Q Consensus 119 sL~~L~~~~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir-~iGvs~~~~~~l~~~~~~~~~~~~q~~~~~~~~~~~~~ 197 (289)
.+++|. ++ +.++..|-+..+..+.++.+.+|++...|- ..|=+.++...+..+++..-++++|......--....+
T Consensus 244 ~~~~Le-~~--~~~iEePv~~~d~~~~~~~la~Lr~~~~iPIa~dEs~~~~~~~~~li~~~avdi~~~d~~~gGIt~~~k 320 (441)
T TIGR03247 244 LCKDLK-GV--LAYAEDPCGAEQGYSGREVMAEFRRATGLPTATNMIATDWRQMGHALQLQAVDIPLADPHFWTMQGSVR 320 (441)
T ss_pred HHHHhh-hh--hceEeCCCCcccccchHHHHHHHHHhCCCCEEcCCccCCHHHHHHHHHhCCCCEEeccCCcchHHHHHH
Confidence 333443 23 345665543221112367788887765543 33556778889999988888888888764211111267
Q ss_pred hHHHHHHhCCeEEEccc
Q 022968 198 IIPLCRELGIGIVAYSP 214 (289)
Q Consensus 198 ~~~~~~~~gi~v~a~~p 214 (289)
+.+.|+.+|+.+..++.
T Consensus 321 Ia~lA~a~Gi~v~~h~~ 337 (441)
T TIGR03247 321 VAQMCHDWGLTWGSHSN 337 (441)
T ss_pred HHHHHHHcCCEEEEeCC
Confidence 99999999999887653
No 157
>PRK14455 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=39.62 E-value=1.4e+02 Score=27.34 Aligned_cols=89 Identities=10% Similarity=0.087 Sum_probs=57.2
Q ss_pred EeecCCCCC-----------CCHHHHHHHHHHHHHcC-c---cceeecC--CCCHHHHH---HHHccCCceEEeccCCCC
Q 022968 131 YYQHRVDTS-----------VSIEDTMGELKKLVEEG-K---IKYIGLS--EASADTIR---RAHAVHPITAVQMEYSLW 190 (289)
Q Consensus 131 ~~lh~~~~~-----------~~~~~~~~~l~~l~~~G-~---ir~iGvs--~~~~~~l~---~~~~~~~~~~~q~~~~~~ 190 (289)
+-||.+++. .++++++++++.+.+.+ + |+++=+. |.+.++++ +++...+..++-++||++
T Consensus 223 iSL~a~~~e~r~~l~pi~~~~~l~~Il~~l~~~~~~~~~~v~iey~lI~gvNDs~ed~~~La~ll~~l~~~VnLIPynp~ 302 (356)
T PRK14455 223 ISLHAPNNELRSSLMPINRAYPLEKLMEAIEYYIEKTNRRVTFEYILLGGVNDQVEHAEELADLLKGIKCHVNLIPVNPV 302 (356)
T ss_pred eccCCCCHHHHHHhcCcccCCCHHHHHHHHHHHHHhcCCeEEEEEEEeCCCCCCHHHHHHHHHHHhcCCCcEEEEecCcC
Confidence 557877643 24578999999887754 2 4555333 33445544 444444567788899987
Q ss_pred Ccc-----hh---hhhHHHHHHhCCeEEEcccCcccc
Q 022968 191 TRE-----IE---DDIIPLCRELGIGIVAYSPLGRGF 219 (289)
Q Consensus 191 ~~~-----~~---~~~~~~~~~~gi~v~a~~pl~~G~ 219 (289)
... .. ..+.+.++++|+.+..+...+..+
T Consensus 303 ~~~ky~~ps~e~l~~f~~~L~~~gi~v~ir~~~g~di 339 (356)
T PRK14455 303 PERDYVRTPKEDIFAFEDTLKKNGVNCTIRREHGTDI 339 (356)
T ss_pred CCCCCcCCCHHHHHHHHHHHHHCCCcEEEeCCCCcch
Confidence 531 11 456677889999999888776554
No 158
>PRK12331 oxaloacetate decarboxylase; Provisional
Probab=39.58 E-value=1.9e+02 Score=27.38 Aligned_cols=101 Identities=13% Similarity=0.117 Sum_probs=55.9
Q ss_pred CCHHHHHHHHHHHHHHcCCCcccEEeecCCCCCC----CHHHHHHHHHHHHHcC-ccce---------eecCCCCHHHHH
Q 022968 107 GSPEYVRKCCEASLKRLDVDYIDLYYQHRVDTSV----SIEDTMGELKKLVEEG-KIKY---------IGLSEASADTIR 172 (289)
Q Consensus 107 ~~~~~i~~~~~~sL~~L~~~~iDl~~lh~~~~~~----~~~~~~~~l~~l~~~G-~ir~---------iGvs~~~~~~l~ 172 (289)
.+.+... .+-+.|.++|++.|++. +....+. ..++.|+.++.+++.. .++. +|.++++.+.+.
T Consensus 23 ~~t~dkl-~ia~~Ld~~Gv~~IE~~--ggatf~~~~~f~~e~p~e~l~~l~~~~~~~~l~~l~r~~N~~G~~~~pddvv~ 99 (448)
T PRK12331 23 MTTEEML-PILEKLDNAGYHSLEMW--GGATFDACLRFLNEDPWERLRKIRKAVKKTKLQMLLRGQNLLGYRNYADDVVE 99 (448)
T ss_pred cCHHHHH-HHHHHHHHcCCCEEEec--CCccchhhhccCCCCHHHHHHHHHHhCCCCEEEEEeccccccccccCchhhHH
Confidence 3444443 34466889999999983 1100000 1123577777777652 2332 566666555444
Q ss_pred H----HHccCCceEEeccCCCCCcchhhhhHHHHHHhCCeEEE
Q 022968 173 R----AHAVHPITAVQMEYSLWTREIEDDIIPLCRELGIGIVA 211 (289)
Q Consensus 173 ~----~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~gi~v~a 211 (289)
+ +.+ ..++++.+...+.+...-.+.+++++++|..+.+
T Consensus 100 ~~v~~A~~-~Gvd~irif~~lnd~~n~~~~v~~ak~~G~~v~~ 141 (448)
T PRK12331 100 SFVQKSVE-NGIDIIRIFDALNDVRNLETAVKATKKAGGHAQV 141 (448)
T ss_pred HHHHHHHH-CCCCEEEEEEecCcHHHHHHHHHHHHHcCCeEEE
Confidence 3 333 3456666554443322235688999999976543
No 159
>cd03317 NAAAR N-acylamino acid racemase (NAAAR), an octameric enzyme that catalyzes the racemization of N-acylamino acids. NAAARs act on a broad range of N-acylamino acids rather than amino acids. Enantiopure amino acids are of industrial interest as chiral building blocks for antibiotics, herbicides, and drugs. NAAAR is a member of the enolase superfamily, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=39.18 E-value=2.9e+02 Score=24.89 Aligned_cols=150 Identities=20% Similarity=0.137 Sum_probs=88.6
Q ss_pred HHHHHHHHHHHHcCCCeEeCCcCcCCCChhHHHHHHHHhc-CCCCCEEEEecccccccCCcccCCCCCHHHHHHHHHHHH
Q 022968 42 EVGCSIIKETFNRGITLFDTSDVYGVDHDNEIMVGKALKQ-LPRDKIQLATKFGCFMLDGVSIGVKGSPEYVRKCCEASL 120 (289)
Q Consensus 42 ~~~~~~l~~A~~~Gi~~~DtA~~Yg~~g~se~~lg~~l~~-~~R~~~~I~tK~~~~~~~~~~~~~~~~~~~i~~~~~~sL 120 (289)
++..+.+..+.+.|++.|=.=- +. ....+.+ +++++ .+ ++.|.-=.. ..++.+... + +
T Consensus 139 ~~~~~~~~~~~~~Gf~~~KiKv--~~-~~d~~~l-~~vr~~~g--~~~l~lDaN----------~~~~~~~a~--~---~ 197 (354)
T cd03317 139 EQLLKQIERYLEEGYKRIKLKI--KP-GWDVEPL-KAVRERFP--DIPLMADAN----------SAYTLADIP--L---L 197 (354)
T ss_pred HHHHHHHHHHHHcCCcEEEEec--Ch-HHHHHHH-HHHHHHCC--CCeEEEECC----------CCCCHHHHH--H---H
Confidence 6677888888999999874321 21 1123333 34443 22 333322211 124554432 2 3
Q ss_pred HHcCCCcccEEeecCCCCCCCHHHHHHHHHHHHHcCcc-ceeecCCCCHHHHHHHHccCCceEEeccCCCCCcc-hhhhh
Q 022968 121 KRLDVDYIDLYYQHRVDTSVSIEDTMGELKKLVEEGKI-KYIGLSEASADTIRRAHAVHPITAVQMEYSLWTRE-IEDDI 198 (289)
Q Consensus 121 ~~L~~~~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~i-r~iGvs~~~~~~l~~~~~~~~~~~~q~~~~~~~~~-~~~~~ 198 (289)
++|. ..++.++..|-+ .+.++.+.+|++.-.+ -..|=|-++.+.+..+++...++++|+..+.+-.- ...++
T Consensus 198 ~~l~--~~~i~~iEeP~~----~~d~~~~~~l~~~~~~pia~dEs~~~~~~~~~~~~~~~~d~~~ik~~~~GGit~~~~i 271 (354)
T cd03317 198 KRLD--EYGLLMIEQPLA----ADDLIDHAELQKLLKTPICLDESIQSAEDARKAIELGACKIINIKPGRVGGLTEALKI 271 (354)
T ss_pred HHhh--cCCccEEECCCC----hhHHHHHHHHHhhcCCCEEeCCccCCHHHHHHHHHcCCCCEEEecccccCCHHHHHHH
Confidence 3432 245555665532 2336677777765432 24566778899999999888889999987664321 22678
Q ss_pred HHHHHHhCCeEEEcccCccc
Q 022968 199 IPLCRELGIGIVAYSPLGRG 218 (289)
Q Consensus 199 ~~~~~~~gi~v~a~~pl~~G 218 (289)
..+|+.+|+.++..+....+
T Consensus 272 ~~~A~~~gi~~~~g~~~es~ 291 (354)
T cd03317 272 HDLCQEHGIPVWCGGMLESG 291 (354)
T ss_pred HHHHHHcCCcEEecCcccch
Confidence 99999999999765544333
No 160
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=39.16 E-value=1.2e+02 Score=26.34 Aligned_cols=62 Identities=19% Similarity=0.262 Sum_probs=45.9
Q ss_pred HHHHHHHHHHcCCC--------------------------cccEEeecCCCCCCCH---HHHHHHHHHHHHcCccceeec
Q 022968 113 RKCCEASLKRLDVD--------------------------YIDLYYQHRVDTSVSI---EDTMGELKKLVEEGKIKYIGL 163 (289)
Q Consensus 113 ~~~~~~sL~~L~~~--------------------------~iDl~~lh~~~~~~~~---~~~~~~l~~l~~~G~ir~iGv 163 (289)
++.++++|+++|.. ..|+++|..|....+. .+.++.|.+|+++|+ .|=+
T Consensus 117 ~~~v~~aL~~Vgm~~~~~r~i~~LSGGQ~QRV~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~eg~--tIl~ 194 (254)
T COG1121 117 KEKVDEALERVGMEDLRDRQIGELSGGQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQEGK--TVLM 194 (254)
T ss_pred HHHHHHHHHHcCchhhhCCcccccCcHHHHHHHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCC--EEEE
Confidence 67788888887653 5789999988766554 467899999999976 3455
Q ss_pred CCCCHHHHHHHHc
Q 022968 164 SEASADTIRRAHA 176 (289)
Q Consensus 164 s~~~~~~l~~~~~ 176 (289)
.+|+...+.+..+
T Consensus 195 vtHDL~~v~~~~D 207 (254)
T COG1121 195 VTHDLGLVMAYFD 207 (254)
T ss_pred EeCCcHHhHhhCC
Confidence 6777777666544
No 161
>PRK09249 coproporphyrinogen III oxidase; Provisional
Probab=39.05 E-value=1.3e+02 Score=28.48 Aligned_cols=60 Identities=22% Similarity=0.309 Sum_probs=36.8
Q ss_pred CCHHHHHHHHHHHHHHcCCCcccEEeecC-CC----------CCC-CHHH---HH-HHHHHHHHcCccceeecCCCCH
Q 022968 107 GSPEYVRKCCEASLKRLDVDYIDLYYQHR-VD----------TSV-SIED---TM-GELKKLVEEGKIKYIGLSEASA 168 (289)
Q Consensus 107 ~~~~~i~~~~~~sL~~L~~~~iDl~~lh~-~~----------~~~-~~~~---~~-~~l~~l~~~G~ir~iGvs~~~~ 168 (289)
.+.+.+++.++..++ ++++++.++.+-. |. ... +.++ .+ .+.+.|.+.|..+ +++|+|..
T Consensus 215 qt~e~~~~~l~~~~~-l~~~~i~~y~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~Gy~~-ye~s~far 290 (453)
T PRK09249 215 QTPESFARTLEKVLE-LRPDRLAVFNYAHVPWLFKAQRKIDEADLPSPEEKLAILQQTIETLTEAGYQY-IGMDHFAL 290 (453)
T ss_pred CCHHHHHHHHHHHHh-cCCCEEEEccCccchhhhhHhcCCCcccCCCHHHHHHHHHHHHHHHHHCCCEE-EeccceeC
Confidence 577788888776664 8999999887641 11 001 1111 23 3455667777655 88888864
No 162
>PRK10200 putative racemase; Provisional
Probab=39.00 E-value=1.3e+02 Score=25.47 Aligned_cols=64 Identities=19% Similarity=0.079 Sum_probs=47.4
Q ss_pred CCHHHHHHHHHHHHHHcCCCcccEEeecCCCC------------CCCHHHHHHHHHHHHHcCccceeecCCCCHHHH
Q 022968 107 GSPEYVRKCCEASLKRLDVDYIDLYYQHRVDT------------SVSIEDTMGELKKLVEEGKIKYIGLSEASADTI 171 (289)
Q Consensus 107 ~~~~~i~~~~~~sL~~L~~~~iDl~~lh~~~~------------~~~~~~~~~~l~~l~~~G~ir~iGvs~~~~~~l 171 (289)
.+.+..++-++..-.+.+.++++.+.+|.++- +.+.....+.++.|.+.| +..|-+...++...
T Consensus 14 aT~~~~~~i~~~t~a~~d~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~l~~~~~~L~~~g-~~~iviaCNTah~~ 89 (230)
T PRK10200 14 STIPYYRLINEGIKQRLGGLHSAQLLLHSVDFHEIEECQRRGEWDKTGDILAEAALGLQRAG-AEGIVLCTNTMHKV 89 (230)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCCeEEEeCCChHHHHHHHHCCCcchHHHHHHHHHHHHHHcC-CCEEEECCchHHHH
Confidence 45677777777777889999999999999842 123445677888888887 78888877666544
No 163
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=38.84 E-value=2.7e+02 Score=24.39 Aligned_cols=20 Identities=15% Similarity=0.290 Sum_probs=14.5
Q ss_pred hhhHHHHHHhCCeEEEcccC
Q 022968 196 DDIIPLCRELGIGIVAYSPL 215 (289)
Q Consensus 196 ~~~~~~~~~~gi~v~a~~pl 215 (289)
.++.+.|+++||..+-..+-
T Consensus 137 ~~~~~~~~~~gi~~I~lvaP 156 (265)
T COG0159 137 DELLKAAEKHGIDPIFLVAP 156 (265)
T ss_pred HHHHHHHHHcCCcEEEEeCC
Confidence 56888888999887754433
No 164
>PF00148 Oxidored_nitro: Nitrogenase component 1 type Oxidoreductase; InterPro: IPR000510 Enzymes belonging to this family include cofactor-requiring nitrogenases and protochlorophyllide reductase. The key enzymatic reactions in nitrogen fixation are catalysed by the nitrogenase complex, which has two components, the iron protein (component 2), and a component (component 1) which is either a molybdenum-iron, vanadium-iron or iron-iron protein. The enzyme (1.18.6.1 from EC) forms a hexamer of two alpha, two beta and two delta chains. Protochlorophyllide reductase (1.3.1.33 from EC) is involved in the light-dependent accumulation of chlorophyll, probably at the step of reduction of protochlorophyllide to chlorophyllide.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QH1_C 1QH8_A 1H1L_C 1QGU_A 3AEK_C 3AET_C 3AER_C 3AEU_A 3AES_C 3AEQ_C ....
Probab=38.83 E-value=3e+02 Score=25.20 Aligned_cols=128 Identities=15% Similarity=0.099 Sum_probs=65.3
Q ss_pred hHHHHHHHHhc----CCCCCEEEEecccccccCCcccCCCCCHHHHHHHHHHHHHHcCCCcccEEeecCCCCCCC----H
Q 022968 71 NEIMVGKALKQ----LPRDKIQLATKFGCFMLDGVSIGVKGSPEYVRKCCEASLKRLDVDYIDLYYQHRVDTSVS----I 142 (289)
Q Consensus 71 se~~lg~~l~~----~~R~~~~I~tK~~~~~~~~~~~~~~~~~~~i~~~~~~sL~~L~~~~iDl~~lh~~~~~~~----~ 142 (289)
.|+.+-+++++ ...+-++|.|-+-...- .-|.+.+-+.+ -++.+. .++.+|.+..... .
T Consensus 58 ~~~kL~~~i~~~~~~~~P~~i~v~~sC~~~iI-------GdD~~~v~~~~---~~~~~~---~vi~v~~~gf~~~~~~G~ 124 (398)
T PF00148_consen 58 GEEKLREAIKEIAEKYKPKAIFVVTSCVPEII-------GDDIEAVAREL---QEEYGI---PVIPVHTPGFSGSYSQGY 124 (398)
T ss_dssp SHHHHHHHHHHHHHHHSTSEEEEEE-HHHHHT-------TTTHHHHHHHH---HHHHSS---EEEEEE--TTSSSHHHHH
T ss_pred chhhHHHHHHHHHhcCCCcEEEEECCCCHHHh-------CCCHHHHHHHh---hcccCC---cEEEEECCCccCCccchH
Confidence 45555566655 34577788877543321 12333333333 334443 7888888765333 2
Q ss_pred HHHHHHHHHHH-H------cCccceeecCCCC---HHHHHHHHccCCceEEec----------------cCCCCCcchh-
Q 022968 143 EDTMGELKKLV-E------EGKIKYIGLSEAS---ADTIRRAHAVHPITAVQM----------------EYSLWTREIE- 195 (289)
Q Consensus 143 ~~~~~~l~~l~-~------~G~ir~iGvs~~~---~~~l~~~~~~~~~~~~q~----------------~~~~~~~~~~- 195 (289)
+.++++|-+.. + .+.|.-+|.++.. .++++++++...+.++.+ .+|++.....
T Consensus 125 ~~a~~~l~~~~~~~~~~~~~~~VNiiG~~~~~~~d~~el~~lL~~~Gi~v~~~~~~~~t~~e~~~~~~A~lniv~~~~~~ 204 (398)
T PF00148_consen 125 DAALRALAEQLVKPPEEKKPRSVNIIGGSPLGPGDLEELKRLLEELGIEVNAVFPGGTTLEEIRKAPEAALNIVLCPEGG 204 (398)
T ss_dssp HHHHHHHHHHHTTGTTTTSSSEEEEEEESTBTHHHHHHHHHHHHHTTEEEEEEEETTBCHHHHHHGGGSSEEEESSCCHH
T ss_pred HHHHHHHHhhcccccccCCCCceEEecCcCCCcccHHHHHHHHHHCCCceEEEeCCCCCHHHHHhCCcCcEEEEeccchh
Confidence 34555555444 2 3678888999766 345666666555444332 1333333221
Q ss_pred hhhHHHHHH-hCCeEEE
Q 022968 196 DDIIPLCRE-LGIGIVA 211 (289)
Q Consensus 196 ~~~~~~~~~-~gi~v~a 211 (289)
....++.++ .|++++.
T Consensus 205 ~~~a~~L~e~~giP~~~ 221 (398)
T PF00148_consen 205 PYAAEWLEERFGIPYLY 221 (398)
T ss_dssp HHHHHHHHHHHT-EEEE
T ss_pred hHHHHHHHHHhCCCeee
Confidence 225555554 5999887
No 165
>PF07287 DUF1446: Protein of unknown function (DUF1446); InterPro: IPR010839 This family consists of several bacterial and plant proteins of around 400 residues in length. The function of this family is unknown.
Probab=38.15 E-value=92 Score=28.60 Aligned_cols=17 Identities=24% Similarity=0.536 Sum_probs=14.6
Q ss_pred hhhHHHHHHhCCeEEEc
Q 022968 196 DDIIPLCRELGIGIVAY 212 (289)
Q Consensus 196 ~~~~~~~~~~gi~v~a~ 212 (289)
+.+++.|+++||.|+.-
T Consensus 61 ~~~L~~~~~~gIkvI~N 77 (362)
T PF07287_consen 61 RPLLPAAAEKGIKVITN 77 (362)
T ss_pred HHHHHHHHhCCCCEEEe
Confidence 67899999999999875
No 166
>PF04481 DUF561: Protein of unknown function (DUF561); InterPro: IPR007570 Protein in this entry are of unknown function and are found in cyanobacteria and the chloroplasts of algae. As the family is exclusively found in phototrophic organisms it may play a role in photosynthesis.
Probab=37.80 E-value=1.8e+02 Score=24.72 Aligned_cols=107 Identities=21% Similarity=0.167 Sum_probs=59.3
Q ss_pred CHHHHHHHHHHHHHcCCCeEeCCcCcCCCChhHHHHHHHHhc--C-------CCCCEEEEecccccccCCc------ccC
Q 022968 40 SHEVGCSIIKETFNRGITLFDTSDVYGVDHDNEIMVGKALKQ--L-------PRDKIQLATKFGCFMLDGV------SIG 104 (289)
Q Consensus 40 ~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~~g~se~~lg~~l~~--~-------~R~~~~I~tK~~~~~~~~~------~~~ 104 (289)
+.+...+++++|-..|-.|+|.|.+ -.++..+... . ..+.++-+.|.|...-.-+ ..+
T Consensus 25 d~~~V~~i~~AA~~ggAt~vDIAad-------p~LV~~~~~~s~lPICVSaVep~~f~~aV~AGAdliEIGNfDsFY~qG 97 (242)
T PF04481_consen 25 DAESVAAIVKAAEIGGATFVDIAAD-------PELVKLAKSLSNLPICVSAVEPELFVAAVKAGADLIEIGNFDSFYAQG 97 (242)
T ss_pred CHHHHHHHHHHHHccCCceEEecCC-------HHHHHHHHHhCCCCeEeecCCHHHHHHHHHhCCCEEEecchHHHHhcC
Confidence 7788999999999999999999863 3344433321 1 1111211222221111000 112
Q ss_pred CCCCHHHHHHHHHHHHHHcCCCcccEEeecCCCCCCCHHHHHHHHHHHHHcCc
Q 022968 105 VKGSPEYVRKCCEASLKRLDVDYIDLYYQHRVDTSVSIEDTMGELKKLVEEGK 157 (289)
Q Consensus 105 ~~~~~~~i~~~~~~sL~~L~~~~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ 157 (289)
..++.+.+.+-.++..+.|= |+.+---.+.-.++++..+-.++|++.|-
T Consensus 98 r~f~a~eVL~Lt~~tR~LLP----~~~LsVTVPHiL~ld~Qv~LA~~L~~~Ga 146 (242)
T PF04481_consen 98 RRFSAEEVLALTRETRSLLP----DITLSVTVPHILPLDQQVQLAEDLVKAGA 146 (242)
T ss_pred CeecHHHHHHHHHHHHHhCC----CCceEEecCccccHHHHHHHHHHHHHhCC
Confidence 34567777777777777662 22222222233567777777777777653
No 167
>TIGR02026 BchE magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase. This model respresents the cobalamin-dependent oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under anaerobic conditions. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under anaerobic conditions (a separate enzyme, AcsF, acts under aerobic conditions). This model identifies two clades of sequences, one from photosynthetic, non-cyanobacterial bacteria and another including Synechocystis and several non-photosynthetic bacteria. The function of the Synechocystis gene is supported by gene clustering with other photosynthetic genes, so the purpose of the gene in the non-photosynthetic bacteria is uncertain. Note that homologs of this gene are not found in plants which rely solely on the aerobic cyclase.
Probab=37.72 E-value=3.7e+02 Score=25.70 Aligned_cols=101 Identities=11% Similarity=0.130 Sum_probs=54.5
Q ss_pred CCHHHHHHHHHHHHHHcCCCcccEEeecCCCCCCCHHHHHHHHHHHHHcC-ccceeecCC----C--CHHHHHHHHccCC
Q 022968 107 GSPEYVRKCCEASLKRLDVDYIDLYYQHRVDTSVSIEDTMGELKKLVEEG-KIKYIGLSE----A--SADTIRRAHAVHP 179 (289)
Q Consensus 107 ~~~~~i~~~~~~sL~~L~~~~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G-~ir~iGvs~----~--~~~~l~~~~~~~~ 179 (289)
.+++.+.+.++...++.|+..+ .+...+.....+.+.+.+++|++.| .--.+++++ . +.+.++.+.+ ..
T Consensus 222 rs~e~Vv~Ei~~l~~~~gv~~~---~~~Dd~f~~~~~~~~~l~~~l~~~~~l~i~w~~~~r~~~i~~d~ell~~l~~-aG 297 (497)
T TIGR02026 222 RDPKKFVDEIEWLVRTHGVGFF---ILADEEPTINRKKFQEFCEEIIARNPISVTWGINTRVTDIVRDADILHLYRR-AG 297 (497)
T ss_pred CCHHHHHHHHHHHHHHcCCCEE---EEEecccccCHHHHHHHHHHHHhcCCCCeEEEEecccccccCCHHHHHHHHH-hC
Confidence 4788999999988888886543 3333233334455677788888887 323344432 1 3333433322 22
Q ss_pred ceEEeccCCC--------CCc----chhhhhHHHHHHhCCeEEE
Q 022968 180 ITAVQMEYSL--------WTR----EIEDDIIPLCRELGIGIVA 211 (289)
Q Consensus 180 ~~~~q~~~~~--------~~~----~~~~~~~~~~~~~gi~v~a 211 (289)
+..+++-.-- +.. ....+.++.|+++||.+.+
T Consensus 298 ~~~v~iGiES~~~~~L~~~~K~~t~~~~~~ai~~l~~~Gi~~~~ 341 (497)
T TIGR02026 298 LVHISLGTEAAAQATLDHFRKGTTTSTNKEAIRLLRQHNILSEA 341 (497)
T ss_pred CcEEEEccccCCHHHHHHhcCCCCHHHHHHHHHHHHHCCCcEEE
Confidence 2222221111 111 1124677888888887654
No 168
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=37.65 E-value=1.7e+02 Score=21.61 Aligned_cols=61 Identities=18% Similarity=0.193 Sum_probs=39.2
Q ss_pred HHHHHHHHHHcCc-cceeecCCCCHHHHHHHHccCCceEEeccCCCCCcc-hhhhhHHHHHHhC
Q 022968 145 TMGELKKLVEEGK-IKYIGLSEASADTIRRAHAVHPITAVQMEYSLWTRE-IEDDIIPLCRELG 206 (289)
Q Consensus 145 ~~~~l~~l~~~G~-ir~iGvs~~~~~~l~~~~~~~~~~~~q~~~~~~~~~-~~~~~~~~~~~~g 206 (289)
..-...-|+..|. |.++| .+.+.+.+.+.+....++++.+.++.-... ...++++.+++.+
T Consensus 16 ~~~~~~~l~~~G~~V~~lg-~~~~~~~l~~~~~~~~pdvV~iS~~~~~~~~~~~~~i~~l~~~~ 78 (119)
T cd02067 16 KNIVARALRDAGFEVIDLG-VDVPPEEIVEAAKEEDADAIGLSGLLTTHMTLMKEVIEELKEAG 78 (119)
T ss_pred HHHHHHHHHHCCCEEEECC-CCCCHHHHHHHHHHcCCCEEEEeccccccHHHHHHHHHHHHHcC
Confidence 3333445666776 66778 557777777777777888888877643332 2256777777774
No 169
>PF01402 RHH_1: Ribbon-helix-helix protein, copG family; InterPro: IPR002145 CopG, also known as RepA, is responsible for the regulation of plasmid copy number. It binds to the repAB promoter and controls synthesis of the plasmid replication initiator protein RepB. Many bacterial transcription regulation proteins bind DNA through a 'helix-turn-helix' motif, nevertheless CopG displays a fully defined HTH-motif structure that is involved not in DNA-binding, but in the maintenance of the intrinsic dimeric functional structure and cooperativity [, ].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2BJ3_B 2BJ8_A 2BJ1_A 2BJ9_A 2BJ7_B 1EA4_L 2CPG_C 1B01_B 2BA3_A 2K9I_B ....
Probab=37.16 E-value=84 Score=18.05 Aligned_cols=22 Identities=36% Similarity=0.549 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHhCCCHHHHHH
Q 022968 251 LLYTRLETLAAKYGCTTPQLAL 272 (289)
Q Consensus 251 ~~~~~l~~ia~~~g~s~~q~al 272 (289)
+..+.|.++|++.|.|..++.-
T Consensus 9 ~~~~~l~~~a~~~g~s~s~~ir 30 (39)
T PF01402_consen 9 ELYERLDELAKELGRSRSELIR 30 (39)
T ss_dssp HHHHHHHHHHHHHTSSHHHHHH
T ss_pred HHHHHHHHHHHHHCcCHHHHHH
Confidence 3457899999999999888543
No 170
>TIGR01060 eno phosphopyruvate hydratase. Alternate name: enolase
Probab=36.92 E-value=3.6e+02 Score=25.29 Aligned_cols=96 Identities=10% Similarity=0.095 Sum_probs=60.8
Q ss_pred CCHHHHHHHHHHHHHHcCCCcccEEeecCCCCCCCHHHHHHHHHHHHHcC--ccceeecCC-C-CHHHHHHHHccCCceE
Q 022968 107 GSPEYVRKCCEASLKRLDVDYIDLYYQHRVDTSVSIEDTMGELKKLVEEG--KIKYIGLSE-A-SADTIRRAHAVHPITA 182 (289)
Q Consensus 107 ~~~~~i~~~~~~sL~~L~~~~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G--~ir~iGvs~-~-~~~~l~~~~~~~~~~~ 182 (289)
++.+...+-+++.++. .++.++-.|-+. +-|+.+.+|.+.- .+.-.|=-. . +.+.++.+++....++
T Consensus 262 ~s~~eai~~~~~lle~-----~~i~~iEdPl~~----~D~~~~~~L~~~~~~~ipI~gDE~~~t~~~~~~~~i~~~a~d~ 332 (425)
T TIGR01060 262 LTSEEMIEYYKELVEK-----YPIVSIEDGLSE----EDWEGWAELTKELGDKVQIVGDDLFVTNTEILREGIEMGVANS 332 (425)
T ss_pred cCHHHHHHHHHHHHhc-----CCcEEEEcCCCc----ccHHHHHHHHHhcCCCCeEEeCCCcccCHHHHHHHHHhCCCCE
Confidence 3444544444444443 356667766432 2366677776664 454433322 2 5889999988888899
Q ss_pred EeccCCCCCcc-hhhhhHHHHHHhCCeEEE
Q 022968 183 VQMEYSLWTRE-IEDDIIPLCRELGIGIVA 211 (289)
Q Consensus 183 ~q~~~~~~~~~-~~~~~~~~~~~~gi~v~a 211 (289)
+|+..+-.-.- ...++.+.|+.+|+.++.
T Consensus 333 v~ik~~~iGGItea~~ia~lA~~~Gi~~vv 362 (425)
T TIGR01060 333 ILIKPNQIGTLTETLDAVELAKKAGYTAVI 362 (425)
T ss_pred EEecccccCCHHHHHHHHHHHHHcCCcEEE
Confidence 99988765432 226788999999998654
No 171
>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....
Probab=36.59 E-value=50 Score=24.74 Aligned_cols=28 Identities=18% Similarity=0.349 Sum_probs=25.0
Q ss_pred CHHHHHHHHHHHHHcCCCeEeCCcCcCC
Q 022968 40 SHEVGCSIIKETFNRGITLFDTSDVYGV 67 (289)
Q Consensus 40 ~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~ 67 (289)
+...+.+....+++.|++.||.+..|..
T Consensus 75 ~~~~~~~~~~~~~~~g~~ViD~s~~~R~ 102 (121)
T PF01118_consen 75 PHGASKELAPKLLKAGIKVIDLSGDFRL 102 (121)
T ss_dssp CHHHHHHHHHHHHHTTSEEEESSSTTTT
T ss_pred chhHHHHHHHHHhhCCcEEEeCCHHHhC
Confidence 6677899999999999999999999964
No 172
>COG0145 HyuA N-methylhydantoinase A/acetone carboxylase, beta subunit [Amino acid transport and metabolism / Secondary metabolites biosynthesis, transport, and catabolism]
Probab=36.58 E-value=3.9e+02 Score=26.87 Aligned_cols=98 Identities=12% Similarity=0.092 Sum_probs=66.5
Q ss_pred CCCHHHHHHHHHHHHHcCCCeEeCCc--CcCCCChhHHHHHHHHhcCCCCCEEEEe--cccccccCCcccC-----CCC-
Q 022968 38 PLSHEVGCSIIKETFNRGITLFDTSD--VYGVDHDNEIMVGKALKQLPRDKIQLAT--KFGCFMLDGVSIG-----VKG- 107 (289)
Q Consensus 38 ~~~~~~~~~~l~~A~~~Gi~~~DtA~--~Yg~~g~se~~lg~~l~~~~R~~~~I~t--K~~~~~~~~~~~~-----~~~- 107 (289)
++|.++..+.++...+.|+..|=.+. +|-| ...|..+++.+++.- .++.|++ ++++......... ...
T Consensus 135 ~lD~~~v~~~~~~l~~~gv~siAVs~~~S~~N-P~HE~~v~eiire~~-~~i~V~~shev~p~~~~~eR~~TavlnA~L~ 212 (674)
T COG0145 135 PLDEEEVREAAAALKAAGVEAIAVSSLFSYRN-PEHELRVAEIIREIG-PDIPVSLSHEVSPEIGEYERANTAVLNAYLS 212 (674)
T ss_pred cCCHHHHHHHHHHHHhCCCcEEEEEEecccCC-cHHHHHHHHHHHHhc-CCceEEechhcchhcCcccchhhheeeeeeh
Confidence 47899999999999999999876543 5666 779999999999854 6777777 7766332211100 001
Q ss_pred -CHHHHHHHHHHHHHHcCCCcccEEeecCCCC
Q 022968 108 -SPEYVRKCCEASLKRLDVDYIDLYYQHRVDT 138 (289)
Q Consensus 108 -~~~~i~~~~~~sL~~L~~~~iDl~~lh~~~~ 138 (289)
-.....++++..|+.-|.+ .+++++-+...
T Consensus 213 pi~~~yl~~v~~~l~~~g~~-~~l~~m~sdGg 243 (674)
T COG0145 213 PILRRYLEAVKDALKERGIK-ARLMVMQSDGG 243 (674)
T ss_pred HHHHHHHHHHHHHHHhcCCC-ceeEEEecCCc
Confidence 1235556777777777765 67887776543
No 173
>cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain. Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present.
Probab=36.49 E-value=2.5e+02 Score=23.33 Aligned_cols=133 Identities=13% Similarity=0.039 Sum_probs=66.1
Q ss_pred CHHHHHHHHHHHHHcCCCeEeCC----------cCcCCC-ChhHHHHHHHHhcCC-CCCEEEEecccccccCCcccCCCC
Q 022968 40 SHEVGCSIIKETFNRGITLFDTS----------DVYGVD-HDNEIMVGKALKQLP-RDKIQLATKFGCFMLDGVSIGVKG 107 (289)
Q Consensus 40 ~~~~~~~~l~~A~~~Gi~~~DtA----------~~Yg~~-g~se~~lg~~l~~~~-R~~~~I~tK~~~~~~~~~~~~~~~ 107 (289)
+.++..+..+.+.++|+..+|-- +.||.. ....+.+-+.++... .-.+-|..|+...+. .
T Consensus 65 ~~~~~~~aa~~~~~aG~d~ieln~g~p~~~~~~~~~G~~l~~~~~~~~eii~~v~~~~~~~v~vk~r~~~~--------~ 136 (231)
T cd02801 65 DPETLAEAAKIVEELGADGIDLNMGCPSPKVTKGGAGAALLKDPELVAEIVRAVREAVPIPVTVKIRLGWD--------D 136 (231)
T ss_pred CHHHHHHHHHHHHhcCCCEEEEeCCCCHHHHhCCCeeehhcCCHHHHHHHHHHHHHhcCCCEEEEEeeccC--------C
Confidence 56778888888889999998752 235420 012344445454421 111445666543221 1
Q ss_pred CHHHHHHHHHHHHHHcCCCcccEEeecCCCCCC-C-HHHHHHHHHHHHHcCccceeecCCC-CHHHHHHHHccCCceEEe
Q 022968 108 SPEYVRKCCEASLKRLDVDYIDLYYQHRVDTSV-S-IEDTMGELKKLVEEGKIKYIGLSEA-SADTIRRAHAVHPITAVQ 184 (289)
Q Consensus 108 ~~~~i~~~~~~sL~~L~~~~iDl~~lh~~~~~~-~-~~~~~~~l~~l~~~G~ir~iGvs~~-~~~~l~~~~~~~~~~~~q 184 (289)
. +...+- -+.|+..|+ |.+.+|...... . ....|+.+..+++.-.+--++.... +.+.+.+++.....+.++
T Consensus 137 ~-~~~~~~-~~~l~~~Gv---d~i~v~~~~~~~~~~~~~~~~~~~~i~~~~~ipvi~~Ggi~~~~d~~~~l~~~gad~V~ 211 (231)
T cd02801 137 E-EETLEL-AKALEDAGA---SALTVHGRTREQRYSGPADWDYIAEIKEAVSIPVIANGDIFSLEDALRCLEQTGVDGVM 211 (231)
T ss_pred c-hHHHHH-HHHHHHhCC---CEEEECCCCHHHcCCCCCCHHHHHHHHhCCCCeEEEeCCCCCHHHHHHHHHhcCCCEEE
Confidence 1 122222 234555664 556677653211 1 0123555666666555555555443 455565555544445544
Q ss_pred c
Q 022968 185 M 185 (289)
Q Consensus 185 ~ 185 (289)
+
T Consensus 212 i 212 (231)
T cd02801 212 I 212 (231)
T ss_pred E
Confidence 4
No 174
>TIGR03569 NeuB_NnaB N-acetylneuraminate synthase. This family is a subset of the Pfam model pfam03102 and is believed to include only authentic NeuB N-acetylneuraminate (sialic acid) synthase enzymes. The majority of the genes identified by this model are observed adjacent to both the NeuA and NeuC genes which together effect the biosynthesis of CMP-N-acetylneuraminate from UDP-N-acetylglucosamine.
Probab=36.42 E-value=3.3e+02 Score=24.67 Aligned_cols=115 Identities=16% Similarity=0.130 Sum_probs=66.7
Q ss_pred CCHHHHHHHHHHHHHcCCCeEeCCcCcCC---------C--------ChhHHHHHHHHhcCCCCCEEEEecccccccCCc
Q 022968 39 LSHEVGCSIIKETFNRGITLFDTSDVYGV---------D--------HDNEIMVGKALKQLPRDKIQLATKFGCFMLDGV 101 (289)
Q Consensus 39 ~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~---------~--------g~se~~lg~~l~~~~R~~~~I~tK~~~~~~~~~ 101 (289)
++.+....+.++|-+.|+.+|=|.-.-.. + -.+-.+|-..-+ ....++|+|=.
T Consensus 73 l~~e~~~~L~~~~~~~Gi~~~stpfd~~svd~l~~~~v~~~KIaS~~~~n~pLL~~~A~--~gkPvilStGm-------- 142 (329)
T TIGR03569 73 LSEEDHRELKEYCESKGIEFLSTPFDLESADFLEDLGVPRFKIPSGEITNAPLLKKIAR--FGKPVILSTGM-------- 142 (329)
T ss_pred CCHHHHHHHHHHHHHhCCcEEEEeCCHHHHHHHHhcCCCEEEECcccccCHHHHHHHHh--cCCcEEEECCC--------
Confidence 57788899999999999999866542210 0 001112211111 23345554432
Q ss_pred ccCCCCCHHHHHHHHHHHHHHcCCCcccEEeecCCCCC-CCHHH-HHHHHHHHHHcCccceeecCCCCHHH
Q 022968 102 SIGVKGSPEYVRKCCEASLKRLDVDYIDLYYQHRVDTS-VSIED-TMGELKKLVEEGKIKYIGLSEASADT 170 (289)
Q Consensus 102 ~~~~~~~~~~i~~~~~~sL~~L~~~~iDl~~lh~~~~~-~~~~~-~~~~l~~l~~~G~ir~iGvs~~~~~~ 170 (289)
.+.+.+..+++...+ -|.+.-|+.+||+.... .+.++ -+.++..|++.=. .-||+|+|+...
T Consensus 143 -----atl~Ei~~Av~~i~~-~G~~~~~i~llhC~s~YP~~~~~~nL~~I~~Lk~~f~-~pVG~SdHt~G~ 206 (329)
T TIGR03569 143 -----ATLEEIEAAVGVLRD-AGTPDSNITLLHCTTEYPAPFEDVNLNAMDTLKEAFD-LPVGYSDHTLGI 206 (329)
T ss_pred -----CCHHHHHHHHHHHHH-cCCCcCcEEEEEECCCCCCCcccCCHHHHHHHHHHhC-CCEEECCCCccH
Confidence 367888888877654 34321258999987531 22222 3566666666533 469999998654
No 175
>COG0820 Predicted Fe-S-cluster redox enzyme [General function prediction only]
Probab=36.14 E-value=3e+02 Score=25.17 Aligned_cols=89 Identities=11% Similarity=0.153 Sum_probs=0.0
Q ss_pred EEeecCC-----------CCCCCHHHHHHHHHHHHHcCccceeec----------CCCCHHHHHHHHccCCceEEeccCC
Q 022968 130 LYYQHRV-----------DTSVSIEDTMGELKKLVEEGKIKYIGL----------SEASADTIRRAHAVHPITAVQMEYS 188 (289)
Q Consensus 130 l~~lh~~-----------~~~~~~~~~~~~l~~l~~~G~ir~iGv----------s~~~~~~l~~~~~~~~~~~~q~~~~ 188 (289)
.+-||.| ....++++.+++.+...+... +.|-+ |...+..|.+++...+..++-++||
T Consensus 215 AiSLHa~nd~lR~~L~Pink~~~~e~l~~a~r~Y~~~t~-~rVt~EY~Ll~~VND~~e~A~~L~~ll~~~~~~VNLIP~N 293 (349)
T COG0820 215 AISLHAPNDELRDQLMPINKKYPIEELLEAIRYYPEKSG-RRVTFEYVLLDGVNDSLEHAKELAKLLKGIPCKVNLIPYN 293 (349)
T ss_pred EEecCCCCHHHHhhhhccccCCCHHHHHHHHHhhhhccC-ceEEEEeeecccccCCHHHHHHHHHHhcCCCceEEEeecC
Q ss_pred CCCcch--------hhhhHHHHHHhCCeEEEcccCcccc
Q 022968 189 LWTREI--------EDDIIPLCRELGIGIVAYSPLGRGF 219 (289)
Q Consensus 189 ~~~~~~--------~~~~~~~~~~~gi~v~a~~pl~~G~ 219 (289)
+..... -..+.+..+++||.+..+..-+..+
T Consensus 294 p~~~~~y~r~~~~~i~~F~~~L~~~gv~~tvR~~~g~DI 332 (349)
T COG0820 294 PVPGSDYERSSKERIRKFLKILKKAGVLVTVRKTRGDDI 332 (349)
T ss_pred CCCCCCccCCcHHHHHHHHHHHHhCCeeEEecccccccc
No 176
>COG4943 Predicted signal transduction protein containing sensor and EAL domains [Signal transduction mechanisms]
Probab=36.13 E-value=2.7e+02 Score=26.73 Aligned_cols=125 Identities=17% Similarity=0.184 Sum_probs=66.6
Q ss_pred HHHHHHHhcCCCCCEEEEecccccccCCcccCCCCCHHHHHHHHHHHHHHcCCCcccEEeecCCC-CCCCHHHHHHHHHH
Q 022968 73 IMVGKALKQLPRDKIQLATKFGCFMLDGVSIGVKGSPEYVRKCCEASLKRLDVDYIDLYYQHRVD-TSVSIEDTMGELKK 151 (289)
Q Consensus 73 ~~lg~~l~~~~R~~~~I~tK~~~~~~~~~~~~~~~~~~~i~~~~~~sL~~L~~~~iDl~~lh~~~-~~~~~~~~~~~l~~ 151 (289)
+-+|.+|++ +.+++|+-.+... +.....+..-+.+-+++-++. ..-+-|.--+ ...+.......++.
T Consensus 342 ~dlG~~L~~--~~~l~VsINl~a~---------Dl~s~rli~~~~~~l~~~~v~-pqQI~lElTER~f~D~~~~~~iI~r 409 (524)
T COG4943 342 RDLGDLLRQ--HRDLHVSINLSAS---------DLASPRLIDRLNRKLAQYQVR-PQQIALELTERTFADPKKMTPIILR 409 (524)
T ss_pred HHhHHHHHh--CcceEEEEeeeeh---------hhcCchHHHHHHHHHHhcCcC-hHHheeehhhhhhcCchhhhHHHHH
Confidence 456777773 4557777765432 234445666667777776653 1212222111 11334456788999
Q ss_pred HHHcCcccee---e--cCCCCHHHHHHH----HccCCceEEeccCCCCCcchhhhhHHHHHHhCCeEEE
Q 022968 152 LVEEGKIKYI---G--LSEASADTIRRA----HAVHPITAVQMEYSLWTREIEDDIIPLCRELGIGIVA 211 (289)
Q Consensus 152 l~~~G~ir~i---G--vs~~~~~~l~~~----~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~gi~v~a 211 (289)
+++.|.--+| | -||. ..|..+ ++..+--+--+.++-.......-+++.|+++|+.+++
T Consensus 410 ~ReaG~~IyIDDFGTGYSnL--~YLq~L~VDaLKIDKsFvdtlg~~~a~~~I~~hII~MAk~L~L~iVa 476 (524)
T COG4943 410 LREAGHEIYIDDFGTGYSNL--HYLQSLPVDALKIDKSFVDTLGTDSASHLIAPHIIEMAKSLGLKIVA 476 (524)
T ss_pred HHhcCCeEEEccCcCcchhH--HHHhhCCccceeccHHHHHhhccCcccchhHHHHHHHHHHcCCcEEe
Confidence 9999985554 3 3442 233322 1111100011223332222336799999999999986
No 177
>PF02679 ComA: (2R)-phospho-3-sulfolactate synthase (ComA); InterPro: IPR003830 Methanogenic archaea produce methane via the anaerobic reduction of acetate or single carbon compounds []. Coenzyme M (CoM; 2-mercaptoethanesulphonic acid) serves as the terminal methyl carrier for this process. Previously thought to be unique to methanogenic archaea, CoM has also been found in methylotrophic bacteria. Biosynthesis of CoM begins with the Michael addition of sulphite to phosphoenolpyruvate, forming 2-phospho-3-sulpholactate (PSL). This reaction is catalyzed by members of this family, PSL synthase (ComA) []. Subsequently, PSL is dephosphorylated by phosphosulpholactate phosphatase (ComB) to form 3-sulpholactate [], which is then converted to 3-sulphopyruvate by L-sulpholactate dehydrogenase (ComC; 1.1.1.272 from EC) []. Sulphopyruvate decarboxylase (ComDE; 4.1.1.79 from EC) converts 3-sulphopyruvate to sulphoacetaldehyde []. Reductive thiolation of sulphoacetaldehyde is the final step.; GO: 0019295 coenzyme M biosynthetic process; PDB: 1U83_A 1QWG_A.
Probab=35.77 E-value=56 Score=28.18 Aligned_cols=98 Identities=18% Similarity=0.180 Sum_probs=50.4
Q ss_pred HHHHHHHHHHcCCCcccEEeecCCCCCCCHHHHHHHHHHHHHc-Cccceeec-------CCCCHHHHHHHHccCCceEEe
Q 022968 113 RKCCEASLKRLDVDYIDLYYQHRVDTSVSIEDTMGELKKLVEE-GKIKYIGL-------SEASADTIRRAHAVHPITAVQ 184 (289)
Q Consensus 113 ~~~~~~sL~~L~~~~iDl~~lh~~~~~~~~~~~~~~l~~l~~~-G~ir~iGv-------s~~~~~~l~~~~~~~~~~~~q 184 (289)
...++..|+-.| +|||.+=+-|-......++.++..-++.++ |---+.|= ..-..++..+.++.-.|+.+.
T Consensus 24 ~~~~~dlLe~ag-~yID~~K~g~Gt~~l~~~~~l~eki~l~~~~gV~v~~GGtl~E~a~~q~~~~~yl~~~k~lGf~~IE 102 (244)
T PF02679_consen 24 LRYLEDLLESAG-DYIDFLKFGWGTSALYPEEILKEKIDLAHSHGVYVYPGGTLFEVAYQQGKFDEYLEECKELGFDAIE 102 (244)
T ss_dssp HHHHHHHHHHHG-GG-SEEEE-TTGGGGSTCHHHHHHHHHHHCTT-EEEE-HHHHHHHHHTT-HHHHHHHHHHCT-SEEE
T ss_pred HHHHHHHHHHhh-hhccEEEecCceeeecCHHHHHHHHHHHHHcCCeEeCCcHHHHHHHhcChHHHHHHHHHHcCCCEEE
Confidence 346677777788 799999998876544444444444444333 33223221 122234444445556777777
Q ss_pred ccCCCCCcchh--hhhHHHHHHhCCeEEE
Q 022968 185 MEYSLWTREIE--DDIIPLCRELGIGIVA 211 (289)
Q Consensus 185 ~~~~~~~~~~~--~~~~~~~~~~gi~v~a 211 (289)
+.=.-+.-..+ ..+++.++++|..|++
T Consensus 103 iSdGti~l~~~~r~~~I~~~~~~Gf~v~~ 131 (244)
T PF02679_consen 103 ISDGTIDLPEEERLRLIRKAKEEGFKVLS 131 (244)
T ss_dssp E--SSS---HHHHHHHHHHHCCTTSEEEE
T ss_pred ecCCceeCCHHHHHHHHHHHHHCCCEEee
Confidence 76554443322 4677777877777664
No 178
>PRK13361 molybdenum cofactor biosynthesis protein A; Provisional
Probab=35.52 E-value=3.3e+02 Score=24.39 Aligned_cols=132 Identities=14% Similarity=0.164 Sum_probs=71.3
Q ss_pred CCCHHHHHHHHHHHHHcCCCeEeCCcCcCCC---ChhHHHHHHHHhcCC-CCCEEEEecccccccCCcccCCCCCHHHHH
Q 022968 38 PLSHEVGCSIIKETFNRGITLFDTSDVYGVD---HDNEIMVGKALKQLP-RDKIQLATKFGCFMLDGVSIGVKGSPEYVR 113 (289)
Q Consensus 38 ~~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~~---g~se~~lg~~l~~~~-R~~~~I~tK~~~~~~~~~~~~~~~~~~~i~ 113 (289)
.++.++..++++.+.+.|+..+--+. |.| ..-..++.. +++.. ..++.|+|-.. .+.
T Consensus 44 ~ls~eei~~li~~~~~~Gv~~I~~tG--GEPllr~dl~~li~~-i~~~~~l~~i~itTNG~----------------ll~ 104 (329)
T PRK13361 44 VLSLEELAWLAQAFTELGVRKIRLTG--GEPLVRRGCDQLVAR-LGKLPGLEELSLTTNGS----------------RLA 104 (329)
T ss_pred CCCHHHHHHHHHHHHHCCCCEEEEEC--cCCCccccHHHHHHH-HHhCCCCceEEEEeChh----------------HHH
Confidence 36888999999999999998875331 211 011222322 23211 22455555421 122
Q ss_pred HHHHHHHHHcCCCcccEEeecCCCCC--------CCHHHHHHHHHHHHHcCc----cceeecCCCCHHHHHHHHcc---C
Q 022968 114 KCCEASLKRLDVDYIDLYYQHRVDTS--------VSIEDTMGELKKLVEEGK----IKYIGLSEASADTIRRAHAV---H 178 (289)
Q Consensus 114 ~~~~~sL~~L~~~~iDl~~lh~~~~~--------~~~~~~~~~l~~l~~~G~----ir~iGvs~~~~~~l~~~~~~---~ 178 (289)
+ .-+.|...|++++.+ -|+..+++ ..++.+++.++.+++.|. |..+.+...+.+++.++++. .
T Consensus 105 ~-~~~~L~~aGl~~v~I-SlDs~~~e~~~~i~~~g~~~~vl~~i~~~~~~Gi~~v~in~v~~~g~N~~ei~~~~~~~~~~ 182 (329)
T PRK13361 105 R-FAAELADAGLKRLNI-SLDTLRPELFAALTRNGRLERVIAGIDAAKAAGFERIKLNAVILRGQNDDEVLDLVEFCRER 182 (329)
T ss_pred H-HHHHHHHcCCCeEEE-EeccCCHHHhhhhcCCCCHHHHHHHHHHHHHcCCCceEEEEEEECCCCHHHHHHHHHHHHhc
Confidence 2 334566667766543 34444321 346789999999999885 23344444566666655443 3
Q ss_pred CceEEeccCCCC
Q 022968 179 PITAVQMEYSLW 190 (289)
Q Consensus 179 ~~~~~q~~~~~~ 190 (289)
.+++.-++|.++
T Consensus 183 gi~~~~ie~mP~ 194 (329)
T PRK13361 183 GLDIAFIEEMPL 194 (329)
T ss_pred CCeEEEEecccC
Confidence 344433444443
No 179
>PF05913 DUF871: Bacterial protein of unknown function (DUF871); InterPro: IPR008589 This family consists of several conserved hypothetical proteins from bacteria and archaea. The function of this family is unknown though a number are annotated as outer surface proteins.; PDB: 2P0O_A 1X7F_A.
Probab=35.49 E-value=57 Score=29.88 Aligned_cols=157 Identities=20% Similarity=0.152 Sum_probs=73.5
Q ss_pred CHHHHHHHHHHHHHcCCCeEeCCcCcCCCChhH---HHHHHHHhcCCCCCEEEEecccccccCCcccCCCCCHHHHHHHH
Q 022968 40 SHEVGCSIIKETFNRGITLFDTSDVYGVDHDNE---IMVGKALKQLPRDKIQLATKFGCFMLDGVSIGVKGSPEYVRKCC 116 (289)
Q Consensus 40 ~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~~g~se---~~lg~~l~~~~R~~~~I~tK~~~~~~~~~~~~~~~~~~~i~~~~ 116 (289)
+.++..+.|+.|-+.|+..+-|+=+.-. ...+ ..+.+.++......+.|+.=+.+..-.. ...+... +
T Consensus 12 ~~~~~~~yi~~a~~~Gf~~iFTSL~ipe-~~~~~~~~~~~~l~~~a~~~~~~v~~Disp~~l~~----lg~~~~d----l 82 (357)
T PF05913_consen 12 SFEENKAYIEKAAKYGFKRIFTSLHIPE-DDPEDYLERLKELLKLAKELGMEVIADISPKVLKK----LGISYDD----L 82 (357)
T ss_dssp -HHHHHHHHHHHHCTTEEEEEEEE----------HHHHHHHHHHHHHHCT-EEEEEE-CCHHHT----TT-BTTB----T
T ss_pred CHHHHHHHHHHHHHCCCCEEECCCCcCC-CCHHHHHHHHHHHHHHHHHCCCEEEEECCHHHHHH----cCCCHHH----H
Confidence 6788999999999999999999977643 2112 2222222222334565555443221100 0011111 1
Q ss_pred HHHHHHcCCCcccEEeecCCCCCCCHHHHHHHHHHHHHcCccceeecCCCCHHHHHHHHccCC-ceEEeccCCCCCc---
Q 022968 117 EASLKRLDVDYIDLYYQHRVDTSVSIEDTMGELKKLVEEGKIKYIGLSEASADTIRRAHAVHP-ITAVQMEYSLWTR--- 192 (289)
Q Consensus 117 ~~sL~~L~~~~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~~~~~~-~~~~q~~~~~~~~--- 192 (289)
..++.||++.+-+ |..... +...+|-++|.--.+=.|+.+.+.+..+.+... ++-+....|-+.+
T Consensus 83 -~~~~~lGi~~lRl------D~Gf~~----~~ia~ls~ng~~I~LNASti~~~~l~~L~~~~~~~~~i~a~HNfYPr~~T 151 (357)
T PF05913_consen 83 -SFFKELGIDGLRL------DYGFSG----EEIAKLSKNGIKIELNASTITEEELDELIKYGANFSNIIACHNFYPRPYT 151 (357)
T ss_dssp -HHHHHHT-SEEEE------SSS-SC----HHHHHHTTT-SEEEEETTT--CCHHHHHCCTT--GGGEEEE---B-STT-
T ss_pred -HHHHHcCCCEEEE------CCCCCH----HHHHHHHhCCCEEEEECCCCChHHHHHHHHhcCCHHHeEEEecccCCCCC
Confidence 2345566543322 222222 333445455666667778888888888877532 3323333333222
Q ss_pred ----chhhhhHHHHHHhCCeEEEcccCc
Q 022968 193 ----EIEDDIIPLCRELGIGIVAYSPLG 216 (289)
Q Consensus 193 ----~~~~~~~~~~~~~gi~v~a~~pl~ 216 (289)
..-.+.-.+.++.|+.+.|+-|=.
T Consensus 152 GLs~~~f~~~n~~~k~~gi~~~AFI~g~ 179 (357)
T PF05913_consen 152 GLSEEFFIEKNQLLKEYGIKTAAFIPGD 179 (357)
T ss_dssp SB-HHHHHHHHHHHHHTT-EEEEEE--S
T ss_pred CCCHHHHHHHHHHHHHCCCcEEEEecCC
Confidence 222455667789999999988765
No 180
>PF00072 Response_reg: Response regulator receiver domain; InterPro: IPR001789 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Bipartite response regulator proteins are involved in a two-component signal transduction system in bacteria, and certain eukaryotes like protozoa, that functions to detect and respond to environmental changes []. These systems have been detected during host invasion, drug resistance, motility, phosphate uptake, osmoregulation, and nitrogen fixation, amongst others []. The two-component system consists of a histidine protein kinase environmental sensor that phosphorylates the receiver domain of a response regulator protein; phosphorylation induces a conformational change in the response regulator, which activates the effector domain, triggering the cellular response []. The domains of the two-component proteins are highly modular, but the core structures and activities are maintained. The response regulators act as phosphorylation-activated switches to affect a cellular response, usually by transcriptional regulation. Most of these proteins consist of two domains, an N-terminal response regulator receiver domain, and a variable C-terminal effector domain with DNA-binding activity. This entry represents the response regulator receiver domain, which belongs to the CheY family, and receives the signal from the sensor partner in the two-component system.; GO: 0000156 two-component response regulator activity, 0000160 two-component signal transduction system (phosphorelay), 0006355 regulation of transcription, DNA-dependent; PDB: 2QR3_A 2QXY_A 1I3C_A 1JLK_A 2PKX_A 2PL1_A 3H1F_A 3H1E_A 3GWG_A 3H1G_A ....
Probab=35.47 E-value=1.3e+02 Score=21.19 Aligned_cols=67 Identities=15% Similarity=0.100 Sum_probs=39.9
Q ss_pred HHHHcCCCcccEEeecCCCCCCCHHHHHHHHHHHHHcC-ccceeecCCC-CHHHHHHHHccCCceEEeccCC
Q 022968 119 SLKRLDVDYIDLYYQHRVDTSVSIEDTMGELKKLVEEG-KIKYIGLSEA-SADTIRRAHAVHPITAVQMEYS 188 (289)
Q Consensus 119 sL~~L~~~~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G-~ir~iGvs~~-~~~~l~~~~~~~~~~~~q~~~~ 188 (289)
.++.+....+|++++....+.... .+.++.+++.+ .++-|-+++. +.....++.+..-.+++.-+++
T Consensus 35 ~~~~~~~~~~d~iiid~~~~~~~~---~~~~~~i~~~~~~~~ii~~t~~~~~~~~~~~~~~g~~~~l~kp~~ 103 (112)
T PF00072_consen 35 ALELLKKHPPDLIIIDLELPDGDG---LELLEQIRQINPSIPIIVVTDEDDSDEVQEALRAGADDYLSKPFS 103 (112)
T ss_dssp HHHHHHHSTESEEEEESSSSSSBH---HHHHHHHHHHTTTSEEEEEESSTSHHHHHHHHHTTESEEEESSSS
T ss_pred HHHHhcccCceEEEEEeeeccccc---cccccccccccccccEEEecCCCCHHHHHHHHHCCCCEEEECCCC
Confidence 333444445999999876555444 45555555555 6777777755 4466666666554455544443
No 181
>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence. IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.
Probab=35.39 E-value=1.1e+02 Score=28.31 Aligned_cols=87 Identities=14% Similarity=0.216 Sum_probs=49.5
Q ss_pred CCcCcCCCChhHHHHHHHHhcCCCCCEEEEecccccccCC-cccCCCCC----HHHHHHHHHHHHHHcCCCcccEEeecC
Q 022968 61 TSDVYGVDHDNEIMVGKALKQLPRDKIQLATKFGCFMLDG-VSIGVKGS----PEYVRKCCEASLKRLDVDYIDLYYQHR 135 (289)
Q Consensus 61 tA~~Yg~~g~se~~lg~~l~~~~R~~~~I~tK~~~~~~~~-~~~~~~~~----~~~i~~~~~~sL~~L~~~~iDl~~lh~ 135 (289)
++.-+. .++..+.+.++...+.=+||-||+-..-... ......++ -+.|++.+.+.|++-|+....+|++-+
T Consensus 122 ~s~rf~---~ndv~La~~i~~~gK~fyfVRTKvD~Dl~~~~~~~p~~f~~e~~L~~IR~~c~~~L~k~gv~~P~VFLVS~ 198 (376)
T PF05049_consen 122 SSERFT---ENDVQLAKEIQRMGKKFYFVRTKVDSDLYNERRRKPRTFNEEKLLQEIRENCLENLQKAGVSEPQVFLVSS 198 (376)
T ss_dssp ESSS-----HHHHHHHHHHHHTT-EEEEEE--HHHHHHHHHCC-STT--HHTHHHHHHHHHHHHHHCTT-SS--EEEB-T
T ss_pred eCCCCc---hhhHHHHHHHHHcCCcEEEEEecccccHhhhhccCCcccCHHHHHHHHHHHHHHHHHHcCCCcCceEEEeC
Confidence 444444 4888899999986666788999975411100 00011122 457888899999999999999999988
Q ss_pred CCCC-CCHHHHHHHHH
Q 022968 136 VDTS-VSIEDTMGELK 150 (289)
Q Consensus 136 ~~~~-~~~~~~~~~l~ 150 (289)
.+.. -++....++|+
T Consensus 199 ~dl~~yDFp~L~~tL~ 214 (376)
T PF05049_consen 199 FDLSKYDFPKLEETLE 214 (376)
T ss_dssp TTTTSTTHHHHHHHHH
T ss_pred CCcccCChHHHHHHHH
Confidence 7654 34544544444
No 182
>PRK14470 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=35.37 E-value=2.7e+02 Score=25.26 Aligned_cols=89 Identities=11% Similarity=0.093 Sum_probs=55.0
Q ss_pred EeecCCCCC-----------CCHHHHHHHHHHHHHcCc---cceeecC--CCCHHH---HHHHHccCCceEEeccCCCCC
Q 022968 131 YYQHRVDTS-----------VSIEDTMGELKKLVEEGK---IKYIGLS--EASADT---IRRAHAVHPITAVQMEYSLWT 191 (289)
Q Consensus 131 ~~lh~~~~~-----------~~~~~~~~~l~~l~~~G~---ir~iGvs--~~~~~~---l~~~~~~~~~~~~q~~~~~~~ 191 (289)
+-||.++++ .+++++.+++..+.+.|+ ++++=+. |.+.++ +.+++...+..++-++||+..
T Consensus 208 iSLhA~~~e~r~~I~p~~~~~~le~il~ai~~~~~~~rri~ieyvLI~GvNDseeda~~La~llk~l~~~vnlI~~N~~~ 287 (336)
T PRK14470 208 ISLNAAIPWKRRALMPIEQGFPLDELVEAIREHAALRGRVTLEYVMISGVNVGEEDAAALGRLLAGIPVRLNPIAVNDAT 287 (336)
T ss_pred EecCCCCHHHHHHhcCccccCCHHHHHHHHHHHHHhCCCeEEEEEEEecccCCHHHHHHHHHHHhcCCCeEEEeccCCCC
Confidence 457887542 356788888888887654 3444332 334444 444455456688899999854
Q ss_pred cch----h---hhhHHHH--HHhCCeEEEcccCcccc
Q 022968 192 REI----E---DDIIPLC--RELGIGIVAYSPLGRGF 219 (289)
Q Consensus 192 ~~~----~---~~~~~~~--~~~gi~v~a~~pl~~G~ 219 (289)
... . ..+.+.. +++|+.+..+...+..+
T Consensus 288 ~~~~~p~~~~i~~f~~~l~~~~~g~~~~~R~~~G~di 324 (336)
T PRK14470 288 GRYRPPDEDEWNAFRDALARELPGTPVVRRYSGGQDE 324 (336)
T ss_pred CCccCCCHHHHHHHHHHHHHccCCeEEEEECCCCCCh
Confidence 321 1 3455555 36699998888777544
No 183
>COG0422 ThiC Thiamine biosynthesis protein ThiC [Coenzyme metabolism]
Probab=35.22 E-value=3.7e+02 Score=24.94 Aligned_cols=150 Identities=11% Similarity=0.097 Sum_probs=83.1
Q ss_pred CCHHHHHHHHHHHHHcCCCe-EeCCcCcCCCChhHHHHHHHH-hcCCCCCEEEEecccccccCC---cccCCCCCHHHHH
Q 022968 39 LSHEVGCSIIKETFNRGITL-FDTSDVYGVDHDNEIMVGKAL-KQLPRDKIQLATKFGCFMLDG---VSIGVKGSPEYVR 113 (289)
Q Consensus 39 ~~~~~~~~~l~~A~~~Gi~~-~DtA~~Yg~~g~se~~lg~~l-~~~~R~~~~I~tK~~~~~~~~---~~~~~~~~~~~i~ 113 (289)
.+.++-.+-+..|.+.|... -|-+. .|+ - ..+-+++ +. .++=|.|= .. ++.. .....+.+.+.+.
T Consensus 75 ~~i~~EveK~~~A~~~GADtvMDLSt-Ggd---l-~eiR~~ii~~---s~vPvGTV-PI-YqA~~~~~~~~~~~t~d~~~ 144 (432)
T COG0422 75 SDIDEEVEKAVWAIKWGADTVMDLST-GGD---L-HEIREWIIRN---SPVPVGTV-PI-YQALEEVNGKVEDLTEDDFF 144 (432)
T ss_pred CCHHHHHHHHHHHHHhCcceeEeccc-CCC---H-HHHHHHHHhc---CCCCcCCc-hH-HHHHHHHhcchhhCCHHHHH
Confidence 45666677788999999765 56663 342 3 3344443 32 11111110 00 0000 0112356677777
Q ss_pred HHHHHHHHHcCCCcccEEeecCCCCCCCHHHHHHHHHHHHHcCccceeecCCCCHHHHHHHHccCCceEEeccCCCCCcc
Q 022968 114 KCCEASLKRLDVDYIDLYYQHRVDTSVSIEDTMGELKKLVEEGKIKYIGLSEASADTIRRAHAVHPITAVQMEYSLWTRE 193 (289)
Q Consensus 114 ~~~~~sL~~L~~~~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~~~~~~~~~~q~~~~~~~~~ 193 (289)
..+++-.+ +-+|.+-+|.- -.++.++.+++.|++- |+.+-.-.-+...+-.. ..=|++...
T Consensus 145 ~~v~~qa~----~GVdfmTIHaG-------V~~~~~~~~~~~~R~~--giVSRGGsi~a~Wml~~------~~ENply~~ 205 (432)
T COG0422 145 DTVEKQAE----QGVDFMTIHAG-------VLLEYVPRTKRSGRVT--GIVSRGGSIMAAWMLHN------HKENPLYEH 205 (432)
T ss_pred HHHHHHHH----hCCcEEEeehh-------hhHHHHHHHHhcCcee--eeeccchHHHHHHHHHc------CCcCchhhh
Confidence 77776665 45788889963 2478888999998764 55444433333322211 122444444
Q ss_pred hhhhhHHHHHHhCCeEEEcccCccccCCC
Q 022968 194 IEDDIIPLCRELGIGIVAYSPLGRGFFAG 222 (289)
Q Consensus 194 ~~~~~~~~~~~~gi~v~a~~pl~~G~L~~ 222 (289)
+ .++++.|+++++.+- |+.|+-.|
T Consensus 206 f-d~lleI~k~yDvtlS----LGDglRPG 229 (432)
T COG0422 206 F-DELLEIFKEYDVTLS----LGDGLRPG 229 (432)
T ss_pred H-HHHHHHHHHhCeeee----ccCCCCCC
Confidence 4 589999999999874 45555333
No 184
>KOG0059 consensus Lipid exporter ABCA1 and related proteins, ABC superfamily [Lipid transport and metabolism; General function prediction only]
Probab=34.91 E-value=2.2e+02 Score=29.60 Aligned_cols=70 Identities=13% Similarity=0.102 Sum_probs=55.2
Q ss_pred CHHHHHHHHHHHHHHcCC--------------------------CcccEEeecCCCCCCCH---HHHHHHHHHHHHcCcc
Q 022968 108 SPEYVRKCCEASLKRLDV--------------------------DYIDLYYQHRVDTSVSI---EDTMGELKKLVEEGKI 158 (289)
Q Consensus 108 ~~~~i~~~~~~sL~~L~~--------------------------~~iDl~~lh~~~~~~~~---~~~~~~l~~l~~~G~i 158 (289)
....+.+.++..|+.++. ....+++|..|....+. ...|+...++++.|+
T Consensus 671 ~~~di~~~v~~ll~~~~L~~~~~~~~~~ySgG~kRkLs~aialig~p~vi~LDEPstGmDP~arr~lW~ii~~~~k~g~- 749 (885)
T KOG0059|consen 671 PRSDIGSAIEKLLRLVGLGPYANKQVRTYSGGNKRRLSFAIALIGDPSVILLDEPSTGLDPKARRHLWDIIARLRKNGK- 749 (885)
T ss_pred ChhHHHHHHHHHHHHcCChhhhccchhhCCCcchhhHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHhcCC-
Confidence 445677778888887653 25688889988765443 478999999999999
Q ss_pred ceeecCCCCHHHHHHHHccCC
Q 022968 159 KYIGLSEASADTIRRAHAVHP 179 (289)
Q Consensus 159 r~iGvs~~~~~~l~~~~~~~~ 179 (289)
++=+.+|+.++.+.++....
T Consensus 750 -aiiLTSHsMeE~EaLCtR~a 769 (885)
T KOG0059|consen 750 -AIILTSHSMEEAEALCTRTA 769 (885)
T ss_pred -EEEEEcCCHHHHHHHhhhhh
Confidence 89999999999999988643
No 185
>PRK15440 L-rhamnonate dehydratase; Provisional
Probab=34.76 E-value=2.8e+02 Score=25.72 Aligned_cols=68 Identities=16% Similarity=0.067 Sum_probs=50.8
Q ss_pred HHHHHHHHHHcCcc--c-eeecCCCCHHHHHHHHccCCceEEeccCCCCCcc-hhhhhHHHHHHhCCeEEEc
Q 022968 145 TMGELKKLVEEGKI--K-YIGLSEASADTIRRAHAVHPITAVQMEYSLWTRE-IEDDIIPLCRELGIGIVAY 212 (289)
Q Consensus 145 ~~~~l~~l~~~G~i--r-~iGvs~~~~~~l~~~~~~~~~~~~q~~~~~~~~~-~~~~~~~~~~~~gi~v~a~ 212 (289)
-++.+.+|++.-.+ . .-|=+.++...+..+++...++++|....-.-.- .-.++.+.|+.+|+.++..
T Consensus 247 d~~~~~~L~~~~~~~i~ia~gE~~~~~~~~~~li~~~a~Divq~d~~~~GGit~~~kia~lA~a~gi~~~pH 318 (394)
T PRK15440 247 DYWGYRELKRNAPAGMMVTSGEHEATLQGFRTLLEMGCIDIIQPDVGWCGGLTELVKIAALAKARGQLVVPH 318 (394)
T ss_pred cHHHHHHHHHhCCCCCceecCCCccCHHHHHHHHHcCCCCEEeCCccccCCHHHHHHHHHHHHHcCCeeccc
Confidence 46778888877542 2 2367788889999999988899999987765321 2267999999999998654
No 186
>PRK14466 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=34.69 E-value=3.6e+02 Score=24.62 Aligned_cols=90 Identities=11% Similarity=0.049 Sum_probs=57.9
Q ss_pred EEeecCCCCC-----------CCHHHHHHHHHHHHHcCc----cceeecC--CCCHHH---HHHHHccCCceEEeccCCC
Q 022968 130 LYYQHRVDTS-----------VSIEDTMGELKKLVEEGK----IKYIGLS--EASADT---IRRAHAVHPITAVQMEYSL 189 (289)
Q Consensus 130 l~~lh~~~~~-----------~~~~~~~~~l~~l~~~G~----ir~iGvs--~~~~~~---l~~~~~~~~~~~~q~~~~~ 189 (289)
.+-||.|++. .+++++++++++..++.. +-|+=+. |.+.++ |.+++...+..++-++||+
T Consensus 210 avSLha~~~e~R~~i~P~~~~~~l~~l~~al~~y~~~~~rri~~Ey~Li~gvND~~e~a~~L~~ll~~~~~~VNLIp~Np 289 (345)
T PRK14466 210 AISLHSPFPEQRRELMPAEKAFSIKEIIDLLKNYDFSKQRRVSFEYIVFKGLNDSLKHAKELVKLLRGIDCRVNLIRFHA 289 (345)
T ss_pred EEEcCCCCHHHHHHhcCCccCCCHHHHHHHHHHHHHhhCCEEEEEEEEeCCCCCCHHHHHHHHHHHcCCCceEEEEecCC
Confidence 4678988542 346788888888655432 3334332 445554 4445555667888899997
Q ss_pred CCcc----h-h---hhhHHHHHHhCCeEEEcccCcccc
Q 022968 190 WTRE----I-E---DDIIPLCRELGIGIVAYSPLGRGF 219 (289)
Q Consensus 190 ~~~~----~-~---~~~~~~~~~~gi~v~a~~pl~~G~ 219 (289)
.... + . .++.+..+++|+.+..+...+..+
T Consensus 290 ~~~~~~~~~s~~~~~~F~~~L~~~gi~~tvR~s~G~dI 327 (345)
T PRK14466 290 IPGVDLEGSDMARMEAFRDYLTSHGVFTTIRASRGEDI 327 (345)
T ss_pred CCCCCCcCCCHHHHHHHHHHHHHCCCcEEEeCCCCCch
Confidence 5431 1 1 456677789999999998887654
No 187
>PF07555 NAGidase: beta-N-acetylglucosaminidase ; InterPro: IPR011496 This family consists of both eukaryotic and prokaryotic hyaluronidases. Human Q9HAR0 from SWISSPROT is expressed during meningioma []. Clostridium perfringens, P26831 from SWISSPROT, is involved in pathogenesis and is likely to act on connectivity tissue during gas gangrene []. It catalyses the random hydrolysis of 1->4-linkages between N-acetyl-beta-D-glucosamine and D-glucuronate residues in hyaluronate.; PDB: 2WB5_B 2V5C_B 2VUR_A 2V5D_A 2YDS_A 2CBI_A 2XPK_A 2CBJ_B 2J62_A 2X0Y_A ....
Probab=34.35 E-value=76 Score=28.39 Aligned_cols=99 Identities=18% Similarity=0.307 Sum_probs=0.0
Q ss_pred CCCCCCCCHHHHHHHHHHHHHcCCCeEeCCcCcCCCChhHHHHHHHHhcCCCCCEEEEecccccccCCcccCCCCCHHHH
Q 022968 33 GIYNKPLSHEVGCSIIKETFNRGITLFDTSDVYGVDHDNEIMVGKALKQLPRDKIQLATKFGCFMLDGVSIGVKGSPEYV 112 (289)
Q Consensus 33 ~~~~~~~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~~g~se~~lg~~l~~~~R~~~~I~tK~~~~~~~~~~~~~~~~~~~i 112 (289)
+.||.+-+.++-.++++..-+.|.|.+ .|+ +++|.+...|+.-.+ ++.=
T Consensus 6 GFYG~PWs~e~R~~l~~f~~~~kmN~Y----iYA----------------PKdDpyhr~~Wre~Y-----------p~~e 54 (306)
T PF07555_consen 6 GFYGRPWSHEDRLDLIRFLGRYKMNTY----IYA----------------PKDDPYHRSKWREPY-----------PEEE 54 (306)
T ss_dssp -SSSS---HHHHHHHHHHHHHTT--EE----EE------------------TT-TTTTTTTTS--------------HHH
T ss_pred CcCCCCCCHHHHHHHHHHHHHcCCceE----EEC----------------CCCChHHHhhhcccC-----------CHHH
Q ss_pred HHHHHHHHHHcCCCcccEEeecCCCCCC------CHHHHHHHHHHHHHcCccceeec
Q 022968 113 RKCCEASLKRLDVDYIDLYYQHRVDTSV------SIEDTMGELKKLVEEGKIKYIGL 163 (289)
Q Consensus 113 ~~~~~~sL~~L~~~~iDl~~lh~~~~~~------~~~~~~~~l~~l~~~G~ir~iGv 163 (289)
.+.+.+..+.-.-..+|+++-=.|..+. +++.+.+.++.|.+.| ||.+||
T Consensus 55 l~~l~~L~~~a~~~~V~Fv~aisPg~~~~~s~~~d~~~L~~K~~ql~~lG-vr~Fai 110 (306)
T PF07555_consen 55 LAELKELADAAKANGVDFVYAISPGLDICYSSEEDFEALKAKFDQLYDLG-VRSFAI 110 (306)
T ss_dssp HHHHHHHHHHHHHTT-EEEEEEBGTTT--TSHHHHHHHHHHHHHHHHCTT---EEEE
T ss_pred HHHHHHHHHHHHHcCCEEEEEECcccccccCcHHHHHHHHHHHHHHHhcC-CCEEEE
No 188
>cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain. Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th
Probab=34.28 E-value=3.1e+02 Score=23.79 Aligned_cols=24 Identities=17% Similarity=0.163 Sum_probs=21.3
Q ss_pred CCHHHHHHHHHHHHHcCCCeEeCC
Q 022968 39 LSHEVGCSIIKETFNRGITLFDTS 62 (289)
Q Consensus 39 ~~~~~~~~~l~~A~~~Gi~~~DtA 62 (289)
.+.++..++++.-.+.||..++..
T Consensus 19 ~s~~~k~~i~~~L~~~Gv~~IEvG 42 (262)
T cd07948 19 FDTEDKIEIAKALDAFGVDYIELT 42 (262)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEE
Confidence 477889999999999999999985
No 189
>cd00248 Mth938-like Mth938-like domain. The members of this family include: Mth938, 2P1, Xcr35, Rpa2829, and several uncharacterized sequences. Mth938 is a hypothetical protein encoded by the Methanobacterium thermoautotrophicum (Mth) genome. This protein crystallizes as a dimer, although it is monomeric in solution, with one disulfide bond in each monomer. 2P1 is a partially characterized nuclear protein which is homologous to E3-3 from rat and known to be alternately spliced. Xcr35 and Rpa2829 are hypothetical proteins of unknown function from the Xanthomonas campestris and Rhodopseudomonas palustris genomes, respectively, for which the crystal structures have been determined.
Probab=34.13 E-value=1.4e+02 Score=22.06 Aligned_cols=53 Identities=15% Similarity=0.092 Sum_probs=31.0
Q ss_pred cCCCCHHHHHHHHccCCceEEeccCCCCCcchhhhhHHHHHHhCCeEEEcccC
Q 022968 163 LSEASADTIRRAHAVHPITAVQMEYSLWTREIEDDIIPLCRELGIGIVAYSPL 215 (289)
Q Consensus 163 vs~~~~~~l~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~gi~v~a~~pl 215 (289)
.+..+.+.+..+....+|+++-+--.--.+....++.++++++||++..+..-
T Consensus 36 ~~~l~~~~l~~~~~~~~peiliiGTG~~~~~~~~~~~~~l~~~gI~vE~m~T~ 88 (109)
T cd00248 36 LSDLDPEALLPLLAEDRPDILLIGTGAEIAFLPRALRAALRAAGIGVEVMSTG 88 (109)
T ss_pred cccCCHHHHHHHHhhCCCCEEEEcCCCCCCcCCHHHHHHHHHcCCeEEEeCcH
Confidence 34455666666655433455443222222223367899999999999876554
No 190
>PRK08776 cystathionine gamma-synthase; Provisional
Probab=34.10 E-value=2.2e+02 Score=26.42 Aligned_cols=75 Identities=12% Similarity=0.071 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHcCccceeecCCCCHHHHHHHHcc-CCceEEeccCCCCCcc-hhhhhHHHHHHhCCeEEEcccCccc
Q 022968 144 DTMGELKKLVEEGKIKYIGLSEASADTIRRAHAV-HPITAVQMEYSLWTRE-IEDDIIPLCRELGIGIVAYSPLGRG 218 (289)
Q Consensus 144 ~~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~~~~-~~~~~~q~~~~~~~~~-~~~~~~~~~~~~gi~v~a~~pl~~G 218 (289)
.++..++.+.+.+.++.+-+...+.+.++++++. .+..++..+-|+.-.- .-.++.++|+++|+.++.=...+.+
T Consensus 111 ~t~~~~~~~~~~~g~~v~~v~~~d~~~l~~~i~~~tklV~l~~P~NPtG~v~dl~~I~~la~~~gi~vIvD~a~a~~ 187 (405)
T PRK08776 111 GSWRLFNALAKKGHFALITADLTDPRSLADALAQSPKLVLIETPSNPLLRITDLRFVIEAAHKVGALTVVDNTFLSP 187 (405)
T ss_pred HHHHHHHHHHHhcCcEEEEECCCCHHHHHHhcCcCCeEEEEECCCCCCCccCCHHHHHHHHHHcCCEEEEECCCccc
Confidence 3444455544444555555555567777776642 3344455566664332 2267888999999888865555544
No 191
>TIGR02082 metH 5-methyltetrahydrofolate--homocysteine methyltransferase. S-methyltransferase (MetE, EC 2.1.1.14, the cobalamin-independent methionine synthase) and betaine-homocysteine methyltransferase.
Probab=33.96 E-value=6.4e+02 Score=27.31 Aligned_cols=122 Identities=11% Similarity=0.097 Sum_probs=70.1
Q ss_pred HcCCCcccEEeecCCCCCCCHHHHHHHHHHHHHc-Ccc--ceeecCCCCHHHHHHHHccCCceEEeccCCCCC--cchhh
Q 022968 122 RLDVDYIDLYYQHRVDTSVSIEDTMGELKKLVEE-GKI--KYIGLSEASADTIRRAHAVHPITAVQMEYSLWT--REIED 196 (289)
Q Consensus 122 ~L~~~~iDl~~lh~~~~~~~~~~~~~~l~~l~~~-G~i--r~iGvs~~~~~~l~~~~~~~~~~~~q~~~~~~~--~~~~~ 196 (289)
.-|-+.||+-.= ....+.++.++.+..+.+. -.+ --|-|-++.++.++.+++..+-..+-+..|... ... .
T Consensus 379 e~GA~iIDVn~~---~~~vd~~eem~rvv~~i~~~~~~~~vPlsIDS~~~~v~eaaLk~~~G~~IINsIs~~~g~~~~-~ 454 (1178)
T TIGR02082 379 ENGAQILDINVD---YGMLDGVAAMKRFLNLLASEPDISTVPLMLDSSEWAVLEAGLKCIQGKCIVNSISLKDGEERF-I 454 (1178)
T ss_pred HCCCCEEEECCC---CCCCCHHHHHHHHHHHHHhccCCCCCeEEEeCCcHHHHHHHHHhcCCCCEEEeCCCCCCCccH-H
Confidence 467889998642 1223444445444444443 223 226667888999999998732222334445432 222 4
Q ss_pred hhHHHHHHhCCeEEEcccCccccCCCCCCCCCCCcchhhhcCCCCCccchHHHHHHHHHHHHHHHH-hCCCHHHH
Q 022968 197 DIIPLCRELGIGIVAYSPLGRGFFAGKAVVESLPSESILAMHPRFSGENLEKNKLLYTRLETLAAK-YGCTTPQL 270 (289)
Q Consensus 197 ~~~~~~~~~gi~v~a~~pl~~G~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ia~~-~g~s~~q~ 270 (289)
++++.|+++|..++.+.--..|.- ...+.....++++-+.+.+ +|+++.++
T Consensus 455 ~~~~l~~~yga~vV~m~~de~G~p-----------------------~t~e~r~~i~~~~~~~~~~~~Gi~~edI 506 (1178)
T TIGR02082 455 ETAKLIKEYGAAVVVMAFDEEGQA-----------------------RTADRKIEICKRAYNILTEKVGFPPEDI 506 (1178)
T ss_pred HHHHHHHHhCCCEEEEecCCCCCC-----------------------CCHHHHHHHHHHHHHHHHHHcCCCHHHE
Confidence 799999999999998764334431 1123334455555565555 88865543
No 192
>cd02932 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN binding domain. YqjM is involved in the oxidative stress response of Bacillus subtilis. Like the other OYE members, each monomer of YqjM contains FMN as a non-covalently bound cofactor and uses NADPH as a reducing agent. The YqjM enzyme exists as a homotetramer that is assembled as a dimer of catalytically dependent dimers, while other OYE members exist only as monomers or dimers. Moreover, the protein displays a shared active site architecture where an arginine finger at the COOH terminus of one monomer extends into the active site of the adjacent monomer and is directly involved in substrate recognition. Another remarkable difference in the binding of the ligand in YqjM is represented by the contribution of the NH2-terminal tyrosine instead of a COOH-terminal tyrosine in OYE and its homologs.
Probab=33.23 E-value=3.6e+02 Score=24.20 Aligned_cols=94 Identities=14% Similarity=0.067 Sum_probs=47.2
Q ss_pred CCCEEEEecccccccCCcccCCCCCHHHHHHHHHHHHHHcCCCcccEEeecCCC--CC--CCH--HHHHHHHHHHHHcCc
Q 022968 84 RDKIQLATKFGCFMLDGVSIGVKGSPEYVRKCCEASLKRLDVDYIDLYYQHRVD--TS--VSI--EDTMGELKKLVEEGK 157 (289)
Q Consensus 84 R~~~~I~tK~~~~~~~~~~~~~~~~~~~i~~~~~~sL~~L~~~~iDl~~lh~~~--~~--~~~--~~~~~~l~~l~~~G~ 157 (289)
.+++.|..|+....... ...+.+... .+-+.|+..|+|+++ +|... .. .+. ...++.++++++.=.
T Consensus 219 G~d~~v~vri~~~~~~~----~g~~~~e~~-~ia~~Le~~gvd~ie---v~~g~~~~~~~~~~~~~~~~~~~~~ir~~~~ 290 (336)
T cd02932 219 PEDKPLFVRISATDWVE----GGWDLEDSV-ELAKALKELGVDLID---VSSGGNSPAQKIPVGPGYQVPFAERIRQEAG 290 (336)
T ss_pred CCCceEEEEEcccccCC----CCCCHHHHH-HHHHHHHHcCCCEEE---ECCCCCCcccccCCCccccHHHHHHHHhhCC
Confidence 45677788876432110 123343332 233445666765554 33211 00 011 112455566666656
Q ss_pred cceeecCCC-CHHHHHHHHccCCceEEec
Q 022968 158 IKYIGLSEA-SADTIRRAHAVHPITAVQM 185 (289)
Q Consensus 158 ir~iGvs~~-~~~~l~~~~~~~~~~~~q~ 185 (289)
|--++..+. +++..+++++....|.+++
T Consensus 291 iPVi~~G~i~t~~~a~~~l~~g~aD~V~~ 319 (336)
T cd02932 291 IPVIAVGLITDPEQAEAILESGRADLVAL 319 (336)
T ss_pred CCEEEeCCCCCHHHHHHHHHcCCCCeehh
Confidence 666666664 5677777777665665554
No 193
>PTZ00081 enolase; Provisional
Probab=33.02 E-value=4.3e+02 Score=25.01 Aligned_cols=96 Identities=14% Similarity=0.096 Sum_probs=65.5
Q ss_pred CCHHHHHHHHHHHHHHcCCCcccEEeecCCCCCCCHHHHHHHHHHHHHcC--ccceeec--CCCCHHHHHHHHccCCceE
Q 022968 107 GSPEYVRKCCEASLKRLDVDYIDLYYQHRVDTSVSIEDTMGELKKLVEEG--KIKYIGL--SEASADTIRRAHAVHPITA 182 (289)
Q Consensus 107 ~~~~~i~~~~~~sL~~L~~~~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G--~ir~iGv--s~~~~~~l~~~~~~~~~~~ 182 (289)
.+++.+.+-+.+.++.++ ++++-.|-+. +-|+.+.+|.++= .+.-+|= +..+++.+.+.++....++
T Consensus 281 ~s~~eli~~~~~~l~~y~-----I~~IEDPl~~----~D~eg~~~Lt~~lg~~i~IvgDE~~~tn~~~l~~~I~~~aad~ 351 (439)
T PTZ00081 281 LTGEELVELYLDLVKKYP-----IVSIEDPFDQ----DDWEAYAKLTAAIGQKVQIVGDDLLVTNPTRIKKAIEKKACNA 351 (439)
T ss_pred cCHHHHHHHHHHHHhcCC-----cEEEEcCCCc----ccHHHHHHHHHhhCCCceEEcCCcccCCHHHHHHHHHhCCCCE
Confidence 566777666666666654 5566665432 3366666666653 5544443 2456899999999888899
Q ss_pred EeccCCCCCcc-hhhhhHHHHHHhCCeEEE
Q 022968 183 VQMEYSLWTRE-IEDDIIPLCRELGIGIVA 211 (289)
Q Consensus 183 ~q~~~~~~~~~-~~~~~~~~~~~~gi~v~a 211 (289)
+|+..|-.-.- ...++...|+++|+.++.
T Consensus 352 i~iKvnqiGGITe~l~~a~lA~~~Gi~~ii 381 (439)
T PTZ00081 352 LLLKVNQIGTVTEAIEAAKLAQKNGWGVMV 381 (439)
T ss_pred EEeccccccCHHHHHHHHHHHHHcCCcEEE
Confidence 99988865421 226789999999999876
No 194
>PRK12569 hypothetical protein; Provisional
Probab=32.88 E-value=2.3e+02 Score=24.48 Aligned_cols=86 Identities=16% Similarity=0.164 Sum_probs=53.1
Q ss_pred cCccccccccCCCCCCCCCCHHHHHHHHHHHH-HcCCCeEeCCcCcCCCChhHHHHHHHHhcCCCCCEEEEecccccccC
Q 022968 21 VSRLGFGCGGLSGIYNKPLSHEVGCSIIKETF-NRGITLFDTSDVYGVDHDNEIMVGKALKQLPRDKIQLATKFGCFMLD 99 (289)
Q Consensus 21 vs~lg~G~~~~~~~~~~~~~~~~~~~~l~~A~-~~Gi~~~DtA~~Yg~~g~se~~lg~~l~~~~R~~~~I~tK~~~~~~~ 99 (289)
+-. +||.|.+|. . -+++...++..|- ..|. +.|+ ...+-+.++--....+-|-..-++....
T Consensus 11 lGE-sfG~~~~g~----~-~D~~lmp~ItsaNIACG~-------HAGD----p~~M~~tv~lA~~~~V~IGAHPsyPD~~ 73 (245)
T PRK12569 11 MGE-GFGPWRIGD----G-VDEALMPLISSANIATGF-------HAGD----PNIMRRTVELAKAHGVGIGAHPGFRDLV 73 (245)
T ss_pred cCC-CCCCcCCCC----c-cHHHHHHHhhhHHHhccc-------cCCC----HHHHHHHHHHHHHcCCEeccCCCCCcCC
Confidence 444 788887752 1 1677788888874 5576 7774 5667777764345666666665443322
Q ss_pred C-cccCCCCCHHHHHHHHHHHHHHc
Q 022968 100 G-VSIGVKGSPEYVRKCCEASLKRL 123 (289)
Q Consensus 100 ~-~~~~~~~~~~~i~~~~~~sL~~L 123 (289)
+ +...-..+++.++..+..-+..|
T Consensus 74 gFGRr~m~~s~~el~~~v~yQigaL 98 (245)
T PRK12569 74 GFGRRHINASPQELVNDVLYQLGAL 98 (245)
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHH
Confidence 1 33344678888887766655555
No 195
>cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain. FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox
Probab=32.70 E-value=3.2e+02 Score=23.46 Aligned_cols=97 Identities=18% Similarity=0.172 Sum_probs=59.2
Q ss_pred CCCHHHHHHHHHHHHHHcCCCcccEEeecCCCCCCCHHHHHHHHHHHHHcC-ccceeecCCCCHHHHHHHHccCCceEEe
Q 022968 106 KGSPEYVRKCCEASLKRLDVDYIDLYYQHRVDTSVSIEDTMGELKKLVEEG-KIKYIGLSEASADTIRRAHAVHPITAVQ 184 (289)
Q Consensus 106 ~~~~~~i~~~~~~sL~~L~~~~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G-~ir~iGvs~~~~~~l~~~~~~~~~~~~q 184 (289)
.++.+...+- -+.|.++|+++|++-+ |.. .+.-++.++.+.+.+ .++..+.+....+.++.+.+. .++.+.
T Consensus 16 ~~~~~~k~~i-~~~L~~~Gv~~iE~g~---p~~---~~~~~e~~~~l~~~~~~~~~~~~~r~~~~~v~~a~~~-g~~~i~ 87 (259)
T cd07939 16 AFSREEKLAI-ARALDEAGVDEIEVGI---PAM---GEEEREAIRAIVALGLPARLIVWCRAVKEDIEAALRC-GVTAVH 87 (259)
T ss_pred CCCHHHHHHH-HHHHHHcCCCEEEEec---CCC---CHHHHHHHHHHHhcCCCCEEEEeccCCHHHHHHHHhC-CcCEEE
Confidence 3555555444 4669999999999852 221 123366777777743 477777777778888777664 234444
Q ss_pred ccCCCCC--------cc------hhhhhHHHHHHhCCeEE
Q 022968 185 MEYSLWT--------RE------IEDDIIPLCRELGIGIV 210 (289)
Q Consensus 185 ~~~~~~~--------~~------~~~~~~~~~~~~gi~v~ 210 (289)
+.++.-+ .. .-.+.+++|+++|+.+.
T Consensus 88 i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~ 127 (259)
T cd07939 88 ISIPVSDIHLAHKLGKDRAWVLDQLRRLVGRAKDRGLFVS 127 (259)
T ss_pred EEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEE
Confidence 3322211 11 11467889999998765
No 196
>COG0626 MetC Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism]
Probab=32.60 E-value=2.5e+02 Score=26.15 Aligned_cols=80 Identities=9% Similarity=0.087 Sum_probs=52.4
Q ss_pred HHHHHHHHHHHHcCccceeecCCCCHHHHHHHHc--cCCceEEeccCCCCCcchh-hhhHHHHHHhCCeEEEcccCcccc
Q 022968 143 EDTMGELKKLVEEGKIKYIGLSEASADTIRRAHA--VHPITAVQMEYSLWTREIE-DDIIPLCRELGIGIVAYSPLGRGF 219 (289)
Q Consensus 143 ~~~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~~~--~~~~~~~q~~~~~~~~~~~-~~~~~~~~~~gi~v~a~~pl~~G~ 219 (289)
..+...++.+.++.-|....+...+.+.+.+++. ..+..++..+-||...-.+ ..+.+.|+++|+-++.=+.++.++
T Consensus 113 G~t~~~~~~~l~~~gi~~~~~d~~~~~~~~~~~~~~~tk~v~lEtPsNP~l~v~DI~~i~~~A~~~g~~vvVDNTfatP~ 192 (396)
T COG0626 113 GGTYRLFEKILQKFGVEVTFVDPGDDEALEAAIKEPNTKLVFLETPSNPLLEVPDIPAIARLAKAYGALVVVDNTFATPV 192 (396)
T ss_pred chHHHHHHHHHHhcCeEEEEECCCChHHHHHHhcccCceEEEEeCCCCcccccccHHHHHHHHHhcCCEEEEECCccccc
Confidence 3455555555555555555555555545444443 3666777888888776433 678889999998888878887776
Q ss_pred CCC
Q 022968 220 FAG 222 (289)
Q Consensus 220 L~~ 222 (289)
+..
T Consensus 193 ~q~ 195 (396)
T COG0626 193 LQR 195 (396)
T ss_pred ccC
Confidence 543
No 197
>PRK14017 galactonate dehydratase; Provisional
Probab=32.49 E-value=4e+02 Score=24.44 Aligned_cols=155 Identities=12% Similarity=0.092 Sum_probs=91.6
Q ss_pred CHHHHHHHHHHHHHcCCCeEeCCc-----CcCCC-C-hhHHHHHHHHhcCCCCCEEEEecccccccCCcccCCCCCHHHH
Q 022968 40 SHEVGCSIIKETFNRGITLFDTSD-----VYGVD-H-DNEIMVGKALKQLPRDKIQLATKFGCFMLDGVSIGVKGSPEYV 112 (289)
Q Consensus 40 ~~~~~~~~l~~A~~~Gi~~~DtA~-----~Yg~~-g-~se~~lg~~l~~~~R~~~~I~tK~~~~~~~~~~~~~~~~~~~i 112 (289)
+.++..+.+..+.+.|++.|=.-- .++.. + ..+...=+++++.--+++.|..=.. ..++.+..
T Consensus 124 ~~~~~~~~a~~~~~~Gf~~~KiKv~~~~~~~~~~~~~~~d~~~i~avr~~~g~~~~l~vDaN----------~~w~~~~A 193 (382)
T PRK14017 124 RPADVAEAARARVERGFTAVKMNGTEELQYIDSPRKVDAAVARVAAVREAVGPEIGIGVDFH----------GRVHKPMA 193 (382)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEcCcCCccccccHHHHHHHHHHHHHHHHHhCCCCeEEEECC----------CCCCHHHH
Confidence 456677888888899999885421 01100 0 1112222334432223444433221 12454432
Q ss_pred HHHHHHHHHHcCCCcccEEeecCCCCCCCHHHHHHHHHHHHHcCccc-eeecCCCCHHHHHHHHccCCceEEeccCCCCC
Q 022968 113 RKCCEASLKRLDVDYIDLYYQHRVDTSVSIEDTMGELKKLVEEGKIK-YIGLSEASADTIRRAHAVHPITAVQMEYSLWT 191 (289)
Q Consensus 113 ~~~~~~sL~~L~~~~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir-~iGvs~~~~~~l~~~~~~~~~~~~q~~~~~~~ 191 (289)
.+-++.|. .+++.++..|-+.. .++.+.+|.+...+. ..|=|-++...+..+++...++++|+..+.+-
T Consensus 194 ----~~~~~~l~--~~~~~~iEeP~~~~----d~~~~~~L~~~~~~pIa~dEs~~~~~~~~~li~~~a~d~v~~d~~~~G 263 (382)
T PRK14017 194 ----KVLAKELE--PYRPMFIEEPVLPE----NAEALPEIAAQTSIPIATGERLFSRWDFKRVLEAGGVDIIQPDLSHAG 263 (382)
T ss_pred ----HHHHHhhc--ccCCCeEECCCCcC----CHHHHHHHHhcCCCCEEeCCccCCHHHHHHHHHcCCCCeEecCccccC
Confidence 23333342 24555566554322 257788888877665 55667788999999999888899999877653
Q ss_pred c-chhhhhHHHHHHhCCeEEEccc
Q 022968 192 R-EIEDDIIPLCRELGIGIVAYSP 214 (289)
Q Consensus 192 ~-~~~~~~~~~~~~~gi~v~a~~p 214 (289)
. ..-..+.+.|+++||.++..+.
T Consensus 264 Git~~~~ia~~A~~~gi~~~~h~~ 287 (382)
T PRK14017 264 GITECRKIAAMAEAYDVALAPHCP 287 (382)
T ss_pred CHHHHHHHHHHHHHcCCeEeecCC
Confidence 2 1226899999999999987654
No 198
>PRK05406 LamB/YcsF family protein; Provisional
Probab=32.38 E-value=2.1e+02 Score=24.77 Aligned_cols=81 Identities=15% Similarity=0.184 Sum_probs=50.4
Q ss_pred ccccccCCCCCCCCCCHHHHHHHHHHHH-HcCCCeEeCCcCcCCCChhHHHHHHHHhcCCCCCEEEEecccccccCC-cc
Q 022968 25 GFGCGGLSGIYNKPLSHEVGCSIIKETF-NRGITLFDTSDVYGVDHDNEIMVGKALKQLPRDKIQLATKFGCFMLDG-VS 102 (289)
Q Consensus 25 g~G~~~~~~~~~~~~~~~~~~~~l~~A~-~~Gi~~~DtA~~Yg~~g~se~~lg~~l~~~~R~~~~I~tK~~~~~~~~-~~ 102 (289)
|||.|.+| ++++.-.++..|- ..|. +.|+ ...+-+.++--....+-|-..-++....+ +.
T Consensus 13 ~fG~w~~g-------~D~~lmp~IssANIACG~-------HAGD----p~~M~~tv~lA~~~gV~IGAHPgypD~~gFGR 74 (246)
T PRK05406 13 SFGAWKMG-------DDEALLPLVTSANIACGF-------HAGD----PAVMRRTVRLAKENGVAIGAHPGYPDLEGFGR 74 (246)
T ss_pred CCCCCCCC-------CHHHHHHHhhhHHHhccc-------cCCC----HHHHHHHHHHHHHcCCeEccCCCCCccCCCCC
Confidence 78888765 4567788888774 5566 7774 55666666543445566666655433222 33
Q ss_pred cCCCCCHHHHHHHHHHHHHHc
Q 022968 103 IGVKGSPEYVRKCCEASLKRL 123 (289)
Q Consensus 103 ~~~~~~~~~i~~~~~~sL~~L 123 (289)
..-+.+++.++..+..-+..|
T Consensus 75 R~m~~s~~el~~~v~yQigAL 95 (246)
T PRK05406 75 RNMDLSPEELYALVLYQIGAL 95 (246)
T ss_pred CCCCCCHHHHHHHHHHHHHHH
Confidence 445678888877766555554
No 199
>cd03329 MR_like_4 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 4. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown.
Probab=32.34 E-value=3.9e+02 Score=24.32 Aligned_cols=152 Identities=11% Similarity=0.038 Sum_probs=86.2
Q ss_pred CHHHHHHHHHHHHHcCCCeEeCCcCcCCCC--hhHHHHHHHHhcCCCCCEEEEecccccccCCcccCCCCCHHHHHHHHH
Q 022968 40 SHEVGCSIIKETFNRGITLFDTSDVYGVDH--DNEIMVGKALKQLPRDKIQLATKFGCFMLDGVSIGVKGSPEYVRKCCE 117 (289)
Q Consensus 40 ~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~~g--~se~~lg~~l~~~~R~~~~I~tK~~~~~~~~~~~~~~~~~~~i~~~~~ 117 (289)
+.++..+.+..+.+.|++.|=.- .++. . ......=+++++.--+++.|.-=.. ..++.+...+-+
T Consensus 143 ~~~~~~~~a~~~~~~Gf~~~Kik-~~~~-~~~~~di~~i~~vR~~~G~~~~l~vDan----------~~~~~~~A~~~~- 209 (368)
T cd03329 143 SPEAYADFAEECKALGYRAIKLH-PWGP-GVVRRDLKACLAVREAVGPDMRLMHDGA----------HWYSRADALRLG- 209 (368)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEe-cCCc-hhHHHHHHHHHHHHHHhCCCCeEEEECC----------CCcCHHHHHHHH-
Confidence 56777888888999999998652 2221 1 1111222344431112333332111 124444333222
Q ss_pred HHHHHcCCCcccEEeecCCCCCCCHHHHHHHHHHHHHcCccce-eecCCCC-HHHHHHHHccCCceEEeccCCCCCc-ch
Q 022968 118 ASLKRLDVDYIDLYYQHRVDTSVSIEDTMGELKKLVEEGKIKY-IGLSEAS-ADTIRRAHAVHPITAVQMEYSLWTR-EI 194 (289)
Q Consensus 118 ~sL~~L~~~~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~-iGvs~~~-~~~l~~~~~~~~~~~~q~~~~~~~~-~~ 194 (289)
+.|+.+ ++.++..|-+ . +.++.+.+|+++-.|.- .|=+-++ ..++.++++....+++|...+.+-. ..
T Consensus 210 ~~l~~~-----~l~~iEeP~~---~-~d~~~~~~l~~~~~ipIa~~E~~~~~~~~~~~~i~~~a~d~v~~d~~~~GGit~ 280 (368)
T cd03329 210 RALEEL-----GFFWYEDPLR---E-ASISSYRWLAEKLDIPILGTEHSRGALESRADWVLAGATDFLRADVNLVGGITG 280 (368)
T ss_pred HHhhhc-----CCCeEeCCCC---c-hhHHHHHHHHhcCCCCEEccCcccCcHHHHHHHHHhCCCCEEecCccccCCHHH
Confidence 333444 4444554432 2 23577778888755542 2334456 8888888888889999998776532 12
Q ss_pred hhhhHHHHHHhCCeEEEcc
Q 022968 195 EDDIIPLCRELGIGIVAYS 213 (289)
Q Consensus 195 ~~~~~~~~~~~gi~v~a~~ 213 (289)
..++...|+++|+.+...+
T Consensus 281 ~~~ia~~a~~~gi~~~~h~ 299 (368)
T cd03329 281 AMKTAHLAEAFGLDVELHG 299 (368)
T ss_pred HHHHHHHHHHcCCEEEEEC
Confidence 2679999999999987543
No 200
>PF13518 HTH_28: Helix-turn-helix domain
Probab=32.30 E-value=59 Score=19.85 Aligned_cols=22 Identities=14% Similarity=0.557 Sum_probs=17.4
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHh
Q 022968 255 RLETLAAKYGCTTPQLALAWLLH 277 (289)
Q Consensus 255 ~l~~ia~~~g~s~~q~al~w~l~ 277 (289)
.+.++|.++|+|..++ .+|+-.
T Consensus 14 s~~~~a~~~gis~~tv-~~w~~~ 35 (52)
T PF13518_consen 14 SVREIAREFGISRSTV-YRWIKR 35 (52)
T ss_pred CHHHHHHHHCCCHhHH-HHHHHH
Confidence 4678999999999876 777754
No 201
>cd01966 Nitrogenase_NifN_1 Nitrogenase_nifN1: A subgroup of the NifN subunit of the NifEN complex: NifN forms an alpha2beta2 tetramer with NifE. NifN and nifE are structurally homologous to nitrogenase MoFe protein beta and alpha subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The nifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this nifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco).
Probab=32.30 E-value=4.2e+02 Score=24.71 Aligned_cols=106 Identities=9% Similarity=0.068 Sum_probs=52.8
Q ss_pred CcCCCChhHHHHHHHHhc----CCCCCEEEEecccccccCCcccCCCCCHHHHHHHHHHHHHHcC-CCcccEEeecCCCC
Q 022968 64 VYGVDHDNEIMVGKALKQ----LPRDKIQLATKFGCFMLDGVSIGVKGSPEYVRKCCEASLKRLD-VDYIDLYYQHRVDT 138 (289)
Q Consensus 64 ~Yg~~g~se~~lg~~l~~----~~R~~~~I~tK~~~~~~~~~~~~~~~~~~~i~~~~~~sL~~L~-~~~iDl~~lh~~~~ 138 (289)
.|| .|..+-+++++ .+.+=++|.|-+....-. -+.+.+-+.++ ++.- ...+.++.+|.|+.
T Consensus 62 VfG----g~~~L~~~i~~~~~~~~p~~I~V~ttc~~eiIG-------dDi~~v~~~~~---~~~p~~~~~~vi~v~t~gf 127 (417)
T cd01966 62 ILG----GGENLEEALDTLAERAKPKVIGLLSTGLTETRG-------EDIAGALKQFR---AEHPELADVPVVYVSTPDF 127 (417)
T ss_pred EEC----CHHHHHHHHHHHHHhcCCCEEEEECCCcccccc-------cCHHHHHHHHH---hhccccCCCeEEEecCCCC
Confidence 566 45666666655 345557777765433211 13333333332 2210 01467888888875
Q ss_pred CCCH----HHHHHHHHH-H--------HHcCccceeecCCCC---HHHHHHHHccCCceEE
Q 022968 139 SVSI----EDTMGELKK-L--------VEEGKIKYIGLSEAS---ADTIRRAHAVHPITAV 183 (289)
Q Consensus 139 ~~~~----~~~~~~l~~-l--------~~~G~ir~iGvs~~~---~~~l~~~~~~~~~~~~ 183 (289)
.... +.+++++.+ + +++++|.-||-++.+ .++++++++...+.++
T Consensus 128 ~g~~~~G~~~a~~al~~~l~~~~~~~~~~~~~VNiig~~~~~~~D~~eik~lL~~~Gl~v~ 188 (417)
T cd01966 128 EGSLEDGWAAAVEAIIEALVEPGSRTVTDPRQVNLLPGAHLTPGDVEELKDIIEAFGLEPI 188 (417)
T ss_pred CCcHHHHHHHHHHHHHHHhcccccccCCCCCcEEEECCCCCCHHHHHHHHHHHHHcCCceE
Confidence 4332 223333321 2 235568888755443 3556666665444443
No 202
>cd04742 NPD_FabD 2-Nitropropane dioxygenase (NPD)-like domain, associated with the (acyl-carrier-protein) S-malonyltransferase FabD. NPD is part of the nitroalkaneoxidizing enzyme family, that catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDPs are members of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=31.79 E-value=2.1e+02 Score=26.90 Aligned_cols=88 Identities=16% Similarity=0.248 Sum_probs=55.5
Q ss_pred HHHcCCCcccEEeecCCCC-CCCHHHHHHHHHHHHHcCccceeecCCCCHHHHHHHHcc--------CCceEEeccCCCC
Q 022968 120 LKRLDVDYIDLYYQHRVDT-SVSIEDTMGELKKLVEEGKIKYIGLSEASADTIRRAHAV--------HPITAVQMEYSLW 190 (289)
Q Consensus 120 L~~L~~~~iDl~~lh~~~~-~~~~~~~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~~~~--------~~~~~~q~~~~~~ 190 (289)
++.+|++|. ++..|-. ... ..+-...+-+.|-+..+|..+.+++++++.+.. .||-+|-+ .++-
T Consensus 7 ~~~lgiryP---ii~gpMa~Gis---s~eLVaAvs~AGgLG~lgag~l~~e~l~~~I~~ir~~lt~~~PfGVNL~-~~~~ 79 (418)
T cd04742 7 KEDYGLRYA---YVAGAMARGIA---SAELVVAMGKAGMLGFFGAGGLPLDEVEQAIERIQAALGNGEPYGVNLI-HSPD 79 (418)
T ss_pred HHHhCCCcc---EECCcccCCCC---CHHHHHHHHhCCCeeeecCCCCCHHHHHHHHHHHHHhccCCCCeEEeee-cCCC
Confidence 466777664 2333322 121 234455677899999999999999888765442 25555543 3332
Q ss_pred CcchhhhhHHHHHHhCCeEEEccc
Q 022968 191 TREIEDDIIPLCRELGIGIVAYSP 214 (289)
Q Consensus 191 ~~~~~~~~~~~~~~~gi~v~a~~p 214 (289)
+...+.+.++.+.++||.++..+-
T Consensus 80 ~~~~e~~~v~l~le~gV~~ve~sa 103 (418)
T cd04742 80 EPELEEGLVDLFLRHGVRVVEASA 103 (418)
T ss_pred CchhHHHHHHHHHHcCCCEEEecc
Confidence 333346789999999998776543
No 203
>PRK09490 metH B12-dependent methionine synthase; Provisional
Probab=31.76 E-value=7.1e+02 Score=27.14 Aligned_cols=201 Identities=14% Similarity=0.116 Sum_probs=105.5
Q ss_pred CHHHHHHHHHHHHHcC-CCeEeCCcCcCCCChhHHHHHHHHhc-CCCC-----CEEEEecccccccCC-------c-ccC
Q 022968 40 SHEVGCSIIKETFNRG-ITLFDTSDVYGVDHDNEIMVGKALKQ-LPRD-----KIQLATKFGCFMLDG-------V-SIG 104 (289)
Q Consensus 40 ~~~~~~~~l~~A~~~G-i~~~DtA~~Yg~~g~se~~lg~~l~~-~~R~-----~~~I~tK~~~~~~~~-------~-~~~ 104 (289)
++++..+.+...++.| +|.+=-+..=+ .+-=+.|.++++. .+|. ...++|-.....-.. + ...
T Consensus 290 tPe~~a~~~~~~~~~G~v~IIGGCCGTt--PeHI~ala~~l~~~~p~~~~~~~~~~~~S~~~~~~~~~~~~~~~IGER~N 367 (1229)
T PRK09490 290 TPEEMAAQIGEFAESGFLNIVGGCCGTT--PEHIAAIAEAVAGLPPRKLPEIPVACRLSGLEPLNIDDDSLFVNVGERTN 367 (1229)
T ss_pred CHHHHHHHHHHHHHcCCCCEEEecCCCC--HHHHHHHHHHHhcCCCCCCCCcCcceeeecceEEeecCCCcccccccccc
Confidence 6677888899999999 89985222111 1122345666654 2332 111222211111010 0 000
Q ss_pred C-----------CCCHHHHHHHHHHHHHHcCCCcccEEeecCCC-CCCCHHHHHHHHHHHHHcC-cc--ceeecCCCCHH
Q 022968 105 V-----------KGSPEYVRKCCEASLKRLDVDYIDLYYQHRVD-TSVSIEDTMGELKKLVEEG-KI--KYIGLSEASAD 169 (289)
Q Consensus 105 ~-----------~~~~~~i~~~~~~sL~~L~~~~iDl~~lh~~~-~~~~~~~~~~~l~~l~~~G-~i--r~iGvs~~~~~ 169 (289)
. ..+.+.+.+..++- -.-|-+.||+- ++ ...+.++.++.+..+.+.- .+ --|-|-+..++
T Consensus 368 ~~G~k~~~~~i~~~d~~~al~~A~~q-ve~GA~iIDVn----~g~~~id~~eem~rvv~~i~~~~~~~~vPlsIDS~~~~ 442 (1229)
T PRK09490 368 VTGSAKFARLIKEEDYDEALDVARQQ-VENGAQIIDIN----MDEGMLDSEAAMVRFLNLIASEPDIARVPIMIDSSKWE 442 (1229)
T ss_pred hhccHHHHHHHHcCCHHHHHHHHHHH-HHCCCCEEEEC----CCCCCCCHHHHHHHHHHHHHhhhccCCceEEEeCCcHH
Confidence 1 12223333333222 24678899985 33 2234445554444444421 11 22566788899
Q ss_pred HHHHHHccCCceEEeccCCCCCcc-hhhhhHHHHHHhCCeEEEcccCccccCCCCCCCCCCCcchhhhcCCCCCccchHH
Q 022968 170 TIRRAHAVHPITAVQMEYSLWTRE-IEDDIIPLCRELGIGIVAYSPLGRGFFAGKAVVESLPSESILAMHPRFSGENLEK 248 (289)
Q Consensus 170 ~l~~~~~~~~~~~~q~~~~~~~~~-~~~~~~~~~~~~gi~v~a~~pl~~G~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (289)
.++.+++..+-..+-+..|....+ ...++++.|+++|..++++.--..|. +...++
T Consensus 443 ViEaaLk~~~G~~IINSIs~~~~~~~~~~~~~l~~kyga~vV~m~~de~G~-----------------------~~t~e~ 499 (1229)
T PRK09490 443 VIEAGLKCIQGKGIVNSISLKEGEEKFIEHARLVRRYGAAVVVMAFDEQGQ-----------------------ADTRER 499 (1229)
T ss_pred HHHHHHhhcCCCCEEEeCCCCCCCccHHHHHHHHHHhCCCEEEEecCCCCC-----------------------CCCHHH
Confidence 999999873222334445554321 11378999999999999876444443 112455
Q ss_pred HHHHHHHHHHHHH-HhCCCHHHH
Q 022968 249 NKLLYTRLETLAA-KYGCTTPQL 270 (289)
Q Consensus 249 ~~~~~~~l~~ia~-~~g~s~~q~ 270 (289)
.++.++++-+++. ++|+++..+
T Consensus 500 r~~ia~r~~~~~~~~~Gi~~~dI 522 (1229)
T PRK09490 500 KIEICKRAYDILTEEVGFPPEDI 522 (1229)
T ss_pred HHHHHHHHHHHHHHHcCCCHHHE
Confidence 6667777777665 488865443
No 204
>PF00809 Pterin_bind: Pterin binding enzyme This Prosite entry is a subset of the Pfam family; InterPro: IPR000489 The ~250-residue pterin-binding domain has been shown to adopt a (beta/alpha)8 barrel fold, which has the overall shape of a distorted cylinder. It has eight alpha-helices stacked around the outside of an inner cylinder of parallel beta-strands. The pterin ring binds at the bottom of the (beta/alpha;)8 barrel in a polar cup-like region that is relatively solvent exposed and fairly negatively charged. The pterin ring is partially buried within the (beta/alpha)8 barrel. The pterin binding residues are highly conserved and include aspartate and asparagine residues located at the C terminus of the beta-strands of the barrel, which are predicted to form hydrogen bonds with the nitrogen and oxygen atoms of the pterin ring [, , ]. Some proteins known to contain a pterin-binding domain are listed below: Prokaryotic and eukaryotic B12-dependent methionine synthase (MetH) (2.1.1.13 from EC), a large, modular protein that catalyzes the transfer of a methyl group from methyltetrahydrofolate (CH3-H4folate) to Hcy to form methionine, using cobalamin as an intermediate methyl carrier. Prokaryotic and eukaryotic dihydropteroate synthase (DHPS) (2.5.1.15 from EC). It catalyzes the condensation of para-aminobenzoic acid (pABA) with 7,8- dihydropterin-pyrophosphate (DHPPP), eliminating pyrophosphate to form 7,8- dihydropteroate which is subsequently converted to tetrahydrofolate. Moorella thermoacetica 5-methyltetrahydrofolate corrinoid/iron sulphur protein methyltransferase (MeTr). It transfers the N5-methyl group from CH3-H4folate to a cob(I)amide centre in another protein, the corrinoid iron sulphur protein. ; GO: 0042558 pteridine-containing compound metabolic process; PDB: 2VP8_B 2BMB_A 2Y5S_B 2Y5J_A 3BOF_B 1Q7Q_B 1Q85_B 1Q7Z_A 1Q7M_A 1Q8A_B ....
Probab=31.72 E-value=2.6e+02 Score=23.29 Aligned_cols=91 Identities=18% Similarity=0.191 Sum_probs=53.0
Q ss_pred HHcCCCcccEEeec-CCCC-CCCHHH----HHHHHHHHHHcCccceeecCCCCHHHHHHHHccCCceEEeccCCCCCcch
Q 022968 121 KRLDVDYIDLYYQH-RVDT-SVSIED----TMGELKKLVEEGKIKYIGLSEASADTIRRAHAVHPITAVQMEYSLWTREI 194 (289)
Q Consensus 121 ~~L~~~~iDl~~lh-~~~~-~~~~~~----~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~~~~~~~~~~q~~~~~~~~~~ 194 (289)
..-|-++||+---- +|.. ..+.++ +...++.+++..-=--+.+-++.++.++++++. ..+++-...+.-.
T Consensus 29 ~~~GAdiIDIg~~st~p~~~~v~~~eE~~rl~~~l~~i~~~~~~~plSIDT~~~~v~~~aL~~-g~~~ind~~~~~~--- 104 (210)
T PF00809_consen 29 VEAGADIIDIGAESTRPGATPVSEEEEMERLVPVLQAIREENPDVPLSIDTFNPEVAEAALKA-GADIINDISGFED--- 104 (210)
T ss_dssp HHTT-SEEEEESSTSSTTSSSSHHHHHHHHHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHH-TSSEEEETTTTSS---
T ss_pred HHhcCCEEEecccccCCCCCcCCHHHHHHHHHHHHHHHhccCCCeEEEEECCCHHHHHHHHHc-CcceEEecccccc---
Confidence 34688999985332 2321 122233 344555555411112356678899999999887 4343322222211
Q ss_pred hhhhHHHHHHhCCeEEEcccC
Q 022968 195 EDDIIPLCRELGIGIVAYSPL 215 (289)
Q Consensus 195 ~~~~~~~~~~~gi~v~a~~pl 215 (289)
..++++.++++|..++++.--
T Consensus 105 ~~~~~~l~a~~~~~vV~m~~~ 125 (210)
T PF00809_consen 105 DPEMLPLAAEYGAPVVLMHSD 125 (210)
T ss_dssp STTHHHHHHHHTSEEEEESES
T ss_pred cchhhhhhhcCCCEEEEEecc
Confidence 368999999999999987655
No 205
>PRK14460 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=31.37 E-value=4.1e+02 Score=24.27 Aligned_cols=100 Identities=14% Similarity=0.153 Sum_probs=59.8
Q ss_pred HHHHcCCCcccEEeecCCCCC-----------CCHHHHHHHHHHHHHc-Cc---cceeecC--CCCHHHHH---HHHccC
Q 022968 119 SLKRLDVDYIDLYYQHRVDTS-----------VSIEDTMGELKKLVEE-GK---IKYIGLS--EASADTIR---RAHAVH 178 (289)
Q Consensus 119 sL~~L~~~~iDl~~lh~~~~~-----------~~~~~~~~~l~~l~~~-G~---ir~iGvs--~~~~~~l~---~~~~~~ 178 (289)
.|...+...+++ -||.+++. .+++++++++.+...+ |+ |+++=+. |.+.++++ +++...
T Consensus 207 ~L~~~~l~~L~i-SLha~~~e~r~~i~p~~~~~~l~~ll~al~~~~~~~~~~v~iey~LI~GvNDs~ed~~~l~~~l~~~ 285 (354)
T PRK14460 207 ELGESGLAFLAV-SLHAPNQELRERIMPKAARWPLDDLIAALKSYPLKTRERVTFEYLLLGGVNDSLEHARELVRLLSRT 285 (354)
T ss_pred HHHhCCCcEEEE-eCCCCCHHHHHHhcCccccCCHHHHHHHHHHHHHhcCCeEEEEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 344555544444 47777543 2467778877765443 22 4444332 44444444 444445
Q ss_pred CceEEeccCCCCCcc----hh----hhhHHHHHHhCCeEEEcccCcccc
Q 022968 179 PITAVQMEYSLWTRE----IE----DDIIPLCRELGIGIVAYSPLGRGF 219 (289)
Q Consensus 179 ~~~~~q~~~~~~~~~----~~----~~~~~~~~~~gi~v~a~~pl~~G~ 219 (289)
+..++-++||+.... +. ..+.+..+++|+.+..+...+..+
T Consensus 286 ~~~VnLIpyn~~~g~~y~~p~~e~v~~f~~~l~~~Gi~vtir~~~G~di 334 (354)
T PRK14460 286 KCKLNLIVYNPAEGLPYSAPTEERILAFEKYLWSKGITAIIRKSKGQDI 334 (354)
T ss_pred CCcEEEEcCCCCCCCCCCCCCHHHHHHHHHHHHHCCCeEEEeCCCCCch
Confidence 567788899986431 11 346677788899999888877654
No 206
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=31.30 E-value=2.4e+02 Score=22.17 Aligned_cols=76 Identities=17% Similarity=0.150 Sum_probs=0.0
Q ss_pred ccceeecCCCCH--HHHHHHHccCCceEEeccCCCCCcchhhhhHHHHHHhCCeEEEcccCccccCCCCCCCCCCCcchh
Q 022968 157 KIKYIGLSEASA--DTIRRAHAVHPITAVQMEYSLWTREIEDDIIPLCRELGIGIVAYSPLGRGFFAGKAVVESLPSESI 234 (289)
Q Consensus 157 ~ir~iGvs~~~~--~~l~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~gi~v~a~~pl~~G~L~~~~~~~~~~~~~~ 234 (289)
.+--+|...|+. ..+..++....|+ +.|..+.+.+ .+.+..|-++++.++..|.+.++.
T Consensus 16 lvak~GlDgHd~gakvia~~l~d~Gfe---Vi~~g~~~tp-~e~v~aA~~~dv~vIgvSsl~g~h--------------- 76 (143)
T COG2185 16 LVAKLGLDGHDRGAKVIARALADAGFE---VINLGLFQTP-EEAVRAAVEEDVDVIGVSSLDGGH--------------- 76 (143)
T ss_pred EEeccCccccccchHHHHHHHHhCCce---EEecCCcCCH-HHHHHHHHhcCCCEEEEEeccchH---------------
Q ss_pred hhcCCCCCccchHHHHHHHHHHHHHHHHhCCC
Q 022968 235 LAMHPRFSGENLEKNKLLYTRLETLAAKYGCT 266 (289)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~l~~ia~~~g~s 266 (289)
...++.+.+.+++.|..
T Consensus 77 ---------------~~l~~~lve~lre~G~~ 93 (143)
T COG2185 77 ---------------LTLVPGLVEALREAGVE 93 (143)
T ss_pred ---------------HHHHHHHHHHHHHhCCc
No 207
>KOG0173 consensus 20S proteasome, regulatory subunit beta type PSMB7/PSMB10/PUP1 [Posttranslational modification, protein turnover, chaperones]
Probab=31.23 E-value=42 Score=28.84 Aligned_cols=41 Identities=22% Similarity=0.403 Sum_probs=29.0
Q ss_pred ccCccccccccCC------CCCCCCCCHHHHHHHHHHHHHcCCCeEeC
Q 022968 20 EVSRLGFGCGGLS------GIYNKPLSHEVGCSIIKETFNRGITLFDT 61 (289)
Q Consensus 20 ~vs~lg~G~~~~~------~~~~~~~~~~~~~~~l~~A~~~Gi~~~Dt 61 (289)
+.|-..+|..+++ ..|...++++++.+++..|+++|| |-|-
T Consensus 158 ~~Pf~alGSGslaAmsvlEsr~k~dlt~eea~~Lv~eAi~AGi-~nDL 204 (271)
T KOG0173|consen 158 KLPFTALGSGSLAAMSVLESRWKPDLTKEEAIKLVCEAIAAGI-FNDL 204 (271)
T ss_pred ccceeeeccchHHHHHHHHHhcCcccCHHHHHHHHHHHHHhhh-cccc
Confidence 3444445544443 347667899999999999999999 5553
No 208
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=31.16 E-value=2.7e+02 Score=23.28 Aligned_cols=88 Identities=13% Similarity=0.159 Sum_probs=55.6
Q ss_pred CHHHHHHHHHHHHHHcCCCcccEEeecCCCCCCCHHHHHHHHHHHHHcCccceeecCC-CCHHHHHHHHccCCceEEecc
Q 022968 108 SPEYVRKCCEASLKRLDVDYIDLYYQHRVDTSVSIEDTMGELKKLVEEGKIKYIGLSE-ASADTIRRAHAVHPITAVQME 186 (289)
Q Consensus 108 ~~~~i~~~~~~sL~~L~~~~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~iGvs~-~~~~~l~~~~~~~~~~~~q~~ 186 (289)
+++...+-+ +.|-.-|+..+.+=+ +. .+.++.+++++++..=-.+|..+ .+.++++++++..- +++
T Consensus 18 ~~e~a~~~~-~al~~~Gi~~iEit~-~t-------~~a~~~i~~l~~~~~~~~vGAGTVl~~~~a~~a~~aGA-~Fi--- 84 (204)
T TIGR01182 18 DVDDALPLA-KALIEGGLRVLEVTL-RT-------PVALDAIRLLRKEVPDALIGAGTVLNPEQLRQAVDAGA-QFI--- 84 (204)
T ss_pred CHHHHHHHH-HHHHHcCCCEEEEeC-CC-------ccHHHHHHHHHHHCCCCEEEEEeCCCHHHHHHHHHcCC-CEE---
Confidence 455554444 566667877666533 11 24566777777664435688876 47888888887532 222
Q ss_pred CCCCCcchhhhhHHHHHHhCCeEEE
Q 022968 187 YSLWTREIEDDIIPLCRELGIGIVA 211 (289)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~gi~v~a 211 (289)
.++. ...+++++|+++|+.++.
T Consensus 85 vsP~---~~~~v~~~~~~~~i~~iP 106 (204)
T TIGR01182 85 VSPG---LTPELAKHAQDHGIPIIP 106 (204)
T ss_pred ECCC---CCHHHHHHHHHcCCcEEC
Confidence 2232 236899999999998875
No 209
>PRK10415 tRNA-dihydrouridine synthase B; Provisional
Probab=31.02 E-value=3.9e+02 Score=23.93 Aligned_cols=135 Identities=10% Similarity=0.029 Sum_probs=76.1
Q ss_pred CHHHHHHHHHHHHHcCCCeEeCCcC----------cCCC-ChhHHHHHHHHhcC-CCCCEEEEecccccccCCcccCCCC
Q 022968 40 SHEVGCSIIKETFNRGITLFDTSDV----------YGVD-HDNEIMVGKALKQL-PRDKIQLATKFGCFMLDGVSIGVKG 107 (289)
Q Consensus 40 ~~~~~~~~l~~A~~~Gi~~~DtA~~----------Yg~~-g~se~~lg~~l~~~-~R~~~~I~tK~~~~~~~~~~~~~~~ 107 (289)
+.++..+..+.+.+.|+..+|.--. +|.. ...-+.+.+.++.. ..-++-|+.|+...+. .
T Consensus 75 ~~~~~~~aa~~~~~~g~d~IdlN~gCP~~~v~~~g~Gs~ll~~p~~~~eiv~av~~a~d~pv~vKiR~G~~--------~ 146 (321)
T PRK10415 75 DPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDLVKSILTEVVNAVDVPVTLKIRTGWA--------P 146 (321)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEeCCCCHHHHcCCCcccHHhcCHHHHHHHHHHHHHhcCCceEEEEEcccc--------C
Confidence 5677777777788899999994221 1210 01233444444431 1113457777653221 1
Q ss_pred CHHHHHHHHHHHHHHcCCCcccEEeecCCCCCCCH--HHHHHHHHHHHHcCccceeecCCC-CHHHHHHHHccCCceEEe
Q 022968 108 SPEYVRKCCEASLKRLDVDYIDLYYQHRVDTSVSI--EDTMGELKKLVEEGKIKYIGLSEA-SADTIRRAHAVHPITAVQ 184 (289)
Q Consensus 108 ~~~~i~~~~~~sL~~L~~~~iDl~~lh~~~~~~~~--~~~~~~l~~l~~~G~ir~iGvs~~-~~~~l~~~~~~~~~~~~q 184 (289)
+..... .+-+.++..| +|.+.+|.-...... ..-|+.+.++++.=.|--||.... +++..+++++....+.++
T Consensus 147 ~~~~~~-~~a~~le~~G---~d~i~vh~rt~~~~~~G~a~~~~i~~ik~~~~iPVI~nGgI~s~~da~~~l~~~gadgVm 222 (321)
T PRK10415 147 EHRNCV-EIAQLAEDCG---IQALTIHGRTRACLFNGEAEYDSIRAVKQKVSIPVIANGDITDPLKARAVLDYTGADALM 222 (321)
T ss_pred CcchHH-HHHHHHHHhC---CCEEEEecCccccccCCCcChHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHhccCCCEEE
Confidence 111111 2223456667 467778865422111 124788888888767777777665 677888888766677777
Q ss_pred cc
Q 022968 185 ME 186 (289)
Q Consensus 185 ~~ 186 (289)
+-
T Consensus 223 iG 224 (321)
T PRK10415 223 IG 224 (321)
T ss_pred EC
Confidence 64
No 210
>cd08557 PI-PLCc_bacteria_like Catalytic domain of bacterial phosphatidylinositol-specific phospholipase C and similar proteins. This subfamily corresponds to the catalytic domain present in bacterial phosphatidylinositol-specific phospholipase C (PI-PLC, EC 4.6.1.13) and their sequence homologs found in eukaryota. Bacterial PI-PLCs participate in Ca2+-independent PI metabolism, hydrolyzing the membrane lipid phosphatidylinositol (PI) to produce phosphorylated myo-inositol and diacylglycerol (DAG). Although their precise physiological function remains unclear, bacterial PI-PLCs may function as virulence factors in some pathogenic bacteria. Bacterial PI-PLCs contain a single TIM-barrel type catalytic domain. Its catalytic mechanism is based on general base and acid catalysis utilizing two well conserved histidines, and consists of two steps, a phosphotransfer and a phosphodiesterase reaction. Eukaryotic homologs in this family are named as phosphatidylinositol-specific phospholipase C X
Probab=30.97 E-value=1.1e+02 Score=26.32 Aligned_cols=20 Identities=20% Similarity=0.438 Sum_probs=15.4
Q ss_pred HHHHHHHHcCCCeEeCCcCc
Q 022968 46 SIIKETFNRGITLFDTSDVY 65 (289)
Q Consensus 46 ~~l~~A~~~Gi~~~DtA~~Y 65 (289)
.-+...++.|||+||-=..|
T Consensus 41 ~~i~~QL~~GiR~~dlr~~~ 60 (271)
T cd08557 41 LSITDQLDAGVRYLDLRVAY 60 (271)
T ss_pred CCHHHHHhcCceEEEEEeee
Confidence 45778999999999855444
No 211
>PRK14463 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=30.82 E-value=3e+02 Score=25.12 Aligned_cols=89 Identities=12% Similarity=0.162 Sum_probs=56.5
Q ss_pred EeecCCCCC-----------CCHHHHHHHHHHHHHcC--c--cceeecC--CCCHHHHHH---HHccCCceEEeccCCCC
Q 022968 131 YYQHRVDTS-----------VSIEDTMGELKKLVEEG--K--IKYIGLS--EASADTIRR---AHAVHPITAVQMEYSLW 190 (289)
Q Consensus 131 ~~lh~~~~~-----------~~~~~~~~~l~~l~~~G--~--ir~iGvs--~~~~~~l~~---~~~~~~~~~~q~~~~~~ 190 (289)
+-||.+++. .+++++++++.+..+.+ + ++++=+. |.+.+.+.+ ++...+..++-++||+.
T Consensus 211 iSL~a~~~e~r~~I~pink~~~l~~l~~a~~~~~~~~~~~v~ieyvLI~GvNDs~e~~~~L~~ll~~l~~~vnlIPyn~~ 290 (349)
T PRK14463 211 VSLNATTDEVRDRIMPVNRRYPLAELLAACKAFPLPGRRKITIEYVMIRGLNDSLEDAKRLVRLLSDIPSKVNLIPFNEH 290 (349)
T ss_pred EeCCCCCHHHHHHhcCcccCCCHHHHHHHHHHHHHhcCCeEEEEEEEeCCCCCCHHHHHHHHHHHhccCceEEEEecCCC
Confidence 458887542 23466777777766654 2 4455444 344455544 44445567788999987
Q ss_pred Ccc----hh----hhhHHHHHHhCCeEEEcccCcccc
Q 022968 191 TRE----IE----DDIIPLCRELGIGIVAYSPLGRGF 219 (289)
Q Consensus 191 ~~~----~~----~~~~~~~~~~gi~v~a~~pl~~G~ 219 (289)
... +. ..+.+..+++||.+..+...+..+
T Consensus 291 ~~~~~~~ps~e~i~~f~~~L~~~gi~v~vR~~~G~di 327 (349)
T PRK14463 291 EGCDFRSPTQEAIDRFHKYLLDKHVTVITRSSRGSDI 327 (349)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHCCceEEEeCCCCcch
Confidence 431 11 456677889999999998887654
No 212
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=30.68 E-value=1.2e+02 Score=25.36 Aligned_cols=88 Identities=9% Similarity=0.120 Sum_probs=54.1
Q ss_pred CHHHHHHHHHHHHHHcCCCcccEEeecCCCCCCCHHHHHHHHHHHHHcCccceeecCC-CCHHHHHHHHccCCceEEecc
Q 022968 108 SPEYVRKCCEASLKRLDVDYIDLYYQHRVDTSVSIEDTMGELKKLVEEGKIKYIGLSE-ASADTIRRAHAVHPITAVQME 186 (289)
Q Consensus 108 ~~~~i~~~~~~sL~~L~~~~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~iGvs~-~~~~~l~~~~~~~~~~~~q~~ 186 (289)
+++...+.+ +.|-+-|+..+.+=+ -. .+..+.+++++++..=-.||..+ .+.++++++++..- |+-
T Consensus 14 ~~~~a~~ia-~al~~gGi~~iEit~---~t-----p~a~~~I~~l~~~~~~~~vGAGTVl~~e~a~~ai~aGA----~Fi 80 (201)
T PRK06015 14 DVEHAVPLA-RALAAGGLPAIEITL---RT-----PAALDAIRAVAAEVEEAIVGAGTILNAKQFEDAAKAGS----RFI 80 (201)
T ss_pred CHHHHHHHH-HHHHHCCCCEEEEeC---CC-----ccHHHHHHHHHHHCCCCEEeeEeCcCHHHHHHHHHcCC----CEE
Confidence 455555544 455557776666532 11 23566677776654435588866 47888888887532 122
Q ss_pred CCCCCcchhhhhHHHHHHhCCeEEE
Q 022968 187 YSLWTREIEDDIIPLCRELGIGIVA 211 (289)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~gi~v~a 211 (289)
.++. ...+++++|+++||.++.
T Consensus 81 vSP~---~~~~vi~~a~~~~i~~iP 102 (201)
T PRK06015 81 VSPG---TTQELLAAANDSDVPLLP 102 (201)
T ss_pred ECCC---CCHHHHHHHHHcCCCEeC
Confidence 2332 236899999999999874
No 213
>PF13407 Peripla_BP_4: Periplasmic binding protein domain; PDB: 3BRS_B 3GBP_A 3GA5_A 1GCG_A 1GCA_A 3H75_A 3D02_A 3L49_B 3EJW_B 3T95_A ....
Probab=30.51 E-value=2.1e+02 Score=23.88 Aligned_cols=52 Identities=19% Similarity=0.342 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHHcCCCcccEEeecCCCCCCCHHHHHHHHHHHHHcCccceeecCCCC
Q 022968 110 EYVRKCCEASLKRLDVDYIDLYYQHRVDTSVSIEDTMGELKKLVEEGKIKYIGLSEAS 167 (289)
Q Consensus 110 ~~i~~~~~~sL~~L~~~~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~iGvs~~~ 167 (289)
..+.+.+++.++.+|.+ +.++ .+...+.+...+.++.+..+| +..|=++..+
T Consensus 14 ~~~~~g~~~~a~~~g~~-~~~~----~~~~~d~~~q~~~i~~~i~~~-~d~Iiv~~~~ 65 (257)
T PF13407_consen 14 QQVIKGAKAAAKELGYE-VEIV----FDAQNDPEEQIEQIEQAISQG-VDGIIVSPVD 65 (257)
T ss_dssp HHHHHHHHHHHHHHTCE-EEEE----EESTTTHHHHHHHHHHHHHTT-ESEEEEESSS
T ss_pred HHHHHHHHHHHHHcCCE-EEEe----CCCCCCHHHHHHHHHHHHHhc-CCEEEecCCC
Confidence 45778888888998864 3332 333345577788888888876 6666665443
No 214
>PF00697 PRAI: N-(5'phosphoribosyl)anthranilate (PRA) isomerase; InterPro: IPR001240 Indole-3-glycerol phosphate synthase (IGPS) (see IPR001468 from INTERPRO) catalyzes the fourth step in the biosynthesis of tryptophan, the ring closure of 1-(2-carboxy-phenylamino)-1-deoxyribulose into indol-3-glycerol-phosphate. In some bacteria, IGPS is a single chain enzyme. In others, such as Escherichia coli, it is the N-terminal domain of a bifunctional enzyme that also catalyzes N-(5-phosphoribosyl)anthranilate isomerase (PRAI) activity, the third step of tryptophan biosynthesis. In fungi, IGPS is the central domain of a trifunctional enzyme that contains a PRAI C-terminal domain and a glutamine amidotransferase (GATase) N-terminal domain (see IPR000991 from INTERPRO). Phosphoribosylanthranilate isomerase (PRAI) is monomeric and labile in most mesophilic microorganisms, but dimeric and stable in the hyperthermophile Thermotoga maritima (tPRAI) []. The comparison to the known 2.0 A structure of PRAI from Escherichia coli (ePRAI) shows that tPRAI has the complete TIM- or (beta alp ha)8-barrel fold, whereas helix alpha5 in ePRAI is replaced by a loop. The subunits of tPRAI associate via the N-terminal faces of their central beta-barrels. Two long, symmetry-related loops that protrude reciprocally into cavities of the other subunit provide for multiple hydrophobic interactions. Moreover, the side chains of the N-terminal methionines and the C-terminal leucines of both subunits are immobilized in a hydrophobic cluster, and the number of salt bridges is increased in tPRAI. These features appear to be mainly responsible for the high thermostability of tPRAI []. ; GO: 0004640 phosphoribosylanthranilate isomerase activity, 0006568 tryptophan metabolic process; PDB: 1V5X_A 1PII_A 1JCM_P 2KZH_A 1LBM_A 1DL3_A 1NSJ_A.
Probab=30.30 E-value=62 Score=26.75 Aligned_cols=67 Identities=16% Similarity=0.197 Sum_probs=41.6
Q ss_pred HHHHHcCCCcccEEeecCCCCCCCHHHHHHHHHHHHHcCccceeecC-CCCHHHHHHHHccCCceEEeccCC
Q 022968 118 ASLKRLDVDYIDLYYQHRVDTSVSIEDTMGELKKLVEEGKIKYIGLS-EASADTIRRAHAVHPITAVQMEYS 188 (289)
Q Consensus 118 ~sL~~L~~~~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~iGvs-~~~~~~l~~~~~~~~~~~~q~~~~ 188 (289)
..+..+|.||+=+. ++|.....+ ..+.+.++.+.-..+.+||. |.+.+.+.+.+....++++|+.-+
T Consensus 13 ~~~~~~g~d~~Gfi--~~~~S~R~v--~~~~a~~l~~~~~~~~VgVf~~~~~~~I~~~~~~~~ld~vQLHG~ 80 (197)
T PF00697_consen 13 RLAAELGADYLGFI--FYPKSPRYV--SPDQARELVSAVPPKIVGVFVNQSPEEILEIVEELGLDVVQLHGD 80 (197)
T ss_dssp HHHHHHTSSEEEEE----TTCTTB----HHHHHHHHCCSSSSEEEEESSS-HHHHHHHHHHCTESEEEE-SG
T ss_pred HHHHHcCCCEEeee--cCCCCCCcc--CHHHHHHHHHhcCCCEEEEEcCCCHHHHHHHHHHcCCCEEEECCC
Confidence 34457999998875 344433222 24445555555555588985 557788888888899999998544
No 215
>PRK09454 ugpQ cytoplasmic glycerophosphodiester phosphodiesterase; Provisional
Probab=30.22 E-value=3.5e+02 Score=23.05 Aligned_cols=23 Identities=13% Similarity=0.086 Sum_probs=19.9
Q ss_pred CHHHHHHHHHHHHHcCCCeEeCC
Q 022968 40 SHEVGCSIIKETFNRGITLFDTS 62 (289)
Q Consensus 40 ~~~~~~~~l~~A~~~Gi~~~DtA 62 (289)
-+|+....++.|++.|...+++-
T Consensus 20 ~pENT~~Af~~A~~~G~d~vE~D 42 (249)
T PRK09454 20 APENTLAAIDVGARYGHRMIEFD 42 (249)
T ss_pred CChHHHHHHHHHHHcCCCEEEEE
Confidence 46899999999999999988643
No 216
>PRK06361 hypothetical protein; Provisional
Probab=30.17 E-value=3.1e+02 Score=22.54 Aligned_cols=184 Identities=13% Similarity=0.112 Sum_probs=93.4
Q ss_pred HHHHHHHHHHHcCCCeEeCCcCcCCCChhHHHH---HHHHhcC-CCCCEEE--EecccccccCCcccCCCCCHHHHHHHH
Q 022968 43 VGCSIIKETFNRGITLFDTSDVYGVDHDNEIMV---GKALKQL-PRDKIQL--ATKFGCFMLDGVSIGVKGSPEYVRKCC 116 (289)
Q Consensus 43 ~~~~~l~~A~~~Gi~~~DtA~~Yg~~g~se~~l---g~~l~~~-~R~~~~I--~tK~~~~~~~~~~~~~~~~~~~i~~~~ 116 (289)
...++++.|.+.|+..+=.+++..... -...+ -+..++. ...++.| ..-+.. ...+.+ ..+
T Consensus 11 ~~~e~v~~A~~~Gl~~i~iTDH~~~~~-~~~~~~~~~~~~~~~~~~~~i~v~~GiE~~~-----------~~~~~~-~~~ 77 (212)
T PRK06361 11 IPSELVRRARVLGYRAIAITDHADASN-LEEILEKLVRAAEELELYWDIEVIPGVELTH-----------VPPKLI-PKL 77 (212)
T ss_pred CHHHHHHHHHHcCCCEEEEecCCCCcc-HHHHHHHHHHHHHHHhhcCCCEEEEEEEEcc-----------cCchhh-chH
Confidence 368899999999999997777754201 11111 1111111 1113333 222221 112222 233
Q ss_pred HHHHHHcCCCcccEEeecCCCCCCCHHHHHHHHHHHHHcCccceeecCCC-CHHHHHHHHccCCceEEeccCCCCCcchh
Q 022968 117 EASLKRLDVDYIDLYYQHRVDTSVSIEDTMGELKKLVEEGKIKYIGLSEA-SADTIRRAHAVHPITAVQMEYSLWTREIE 195 (289)
Q Consensus 117 ~~sL~~L~~~~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~iGvs~~-~~~~l~~~~~~~~~~~~q~~~~~~~~~~~ 195 (289)
.+.+.+++ .|+..+|......+.. ...-.++.+.|.+.-+|=-.. ..+.++.+.+... .+.+..........
T Consensus 78 ~~~~~~~~---~~~~svH~~~~~~~~~--~~~~~~a~~~~~~dvlaHpd~~~~~~~~~~~~~~~--~lEin~~~~~~~~~ 150 (212)
T PRK06361 78 AKKARDLG---AEIVVVHGETIVEPVE--EGTNLAAIECEDVDILAHPGLITEEEAELAAENGV--FLEITARKGHSLTN 150 (212)
T ss_pred HHHHHHCC---CEEEEECCCCcchhhh--hhhHHHHHhCCCCcEecCcchhhHHHHHHHHHcCe--EEEEECCCCcccch
Confidence 35555564 5666899543322221 111145667887665553332 2233333333222 12222111122234
Q ss_pred hhhHHHHHHhCCeEEEcccCccccCCCCCCCCCCCcchhhhcCCCCCccchHHHHHHHHHHHHHHHHhCCCHHHHHHHHH
Q 022968 196 DDIIPLCRELGIGIVAYSPLGRGFFAGKAVVESLPSESILAMHPRFSGENLEKNKLLYTRLETLAAKYGCTTPQLALAWL 275 (289)
Q Consensus 196 ~~~~~~~~~~gi~v~a~~pl~~G~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ia~~~g~s~~q~al~w~ 275 (289)
..+++++++.|+.++.-|.-.. .+. ....+.+..++++.|.+..++.--+.
T Consensus 151 ~~~l~~a~~~gi~vv~~SDaH~----------------------------~~d-~~~~~~~~~i~~~~gl~~~~v~~~~~ 201 (212)
T PRK06361 151 GHVARIAREAGAPLVINTDTHA----------------------------PSD-LITYEFARKVALGAGLTEKELEEALE 201 (212)
T ss_pred HHHHHHHHHhCCcEEEECCCCC----------------------------HHH-HHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 6799999999999876555441 111 12357888999999999888754443
No 217
>PLN02428 lipoic acid synthase
Probab=30.05 E-value=4.1e+02 Score=24.30 Aligned_cols=158 Identities=13% Similarity=0.192 Sum_probs=82.4
Q ss_pred CCHHHHHHHHHHHHHcCCCeEeCC-c---CcCCCChhHHHHHHHHhcCCC--CCEEEEecccccccCCcccCCCCCHHHH
Q 022968 39 LSHEVGCSIIKETFNRGITLFDTS-D---VYGVDHDNEIMVGKALKQLPR--DKIQLATKFGCFMLDGVSIGVKGSPEYV 112 (289)
Q Consensus 39 ~~~~~~~~~l~~A~~~Gi~~~DtA-~---~Yg~~g~se~~lg~~l~~~~R--~~~~I~tK~~~~~~~~~~~~~~~~~~~i 112 (289)
.+.++..++.+.+.+.|++++=.. . .|-+ +..+ .+.+.++.+.+ ..+.|..=. +. +..+
T Consensus 130 ~d~~Ep~~vA~~v~~~Glk~vvltSg~rddl~D-~ga~-~~~elir~Ir~~~P~i~Ie~L~-pd--------f~~d---- 194 (349)
T PLN02428 130 PDPDEPENVAEAIASWGVDYVVLTSVDRDDLPD-GGSG-HFAETVRRLKQLKPEILVEALV-PD--------FRGD---- 194 (349)
T ss_pred CChhhHHHHHHHHHHcCCCEEEEEEcCCCCCCc-ccHH-HHHHHHHHHHHhCCCcEEEEeC-cc--------ccCC----
Confidence 456667778888888898875321 1 2322 2233 34444444221 123222211 10 0112
Q ss_pred HHHHHHHHHHcCCCcccEEeecCCCC-----------CCCHHHHHHHHHHHHHc--Cccc-e---eecCCCCHHHHHHHH
Q 022968 113 RKCCEASLKRLDVDYIDLYYQHRVDT-----------SVSIEDTMGELKKLVEE--GKIK-Y---IGLSEASADTIRRAH 175 (289)
Q Consensus 113 ~~~~~~sL~~L~~~~iDl~~lh~~~~-----------~~~~~~~~~~l~~l~~~--G~ir-~---iGvs~~~~~~l~~~~ 175 (289)
++.|+.|.-.-+|.+ -|+++. ....++.++.++.+++. |..- . +|+ .-+.+++.+.+
T Consensus 195 ----~elL~~L~eAG~d~i-~hnlETv~rL~~~Ir~~~~sye~~Le~L~~ak~~~pGi~tkSg~MvGL-GET~Edv~e~l 268 (349)
T PLN02428 195 ----LGAVETVATSGLDVF-AHNIETVERLQRIVRDPRAGYKQSLDVLKHAKESKPGLLTKTSIMLGL-GETDEEVVQTM 268 (349)
T ss_pred ----HHHHHHHHHcCCCEE-ccCccCcHHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeEEEec-CCCHHHHHHHH
Confidence 233333333336663 466654 12456788999999988 7653 2 366 45666655543
Q ss_pred cc---CCceEEec-----------cCCCCCcc-hhhhhHHHHHHhCCeEEEcccCcc
Q 022968 176 AV---HPITAVQM-----------EYSLWTRE-IEDDIIPLCRELGIGIVAYSPLGR 217 (289)
Q Consensus 176 ~~---~~~~~~q~-----------~~~~~~~~-~~~~~~~~~~~~gi~v~a~~pl~~ 217 (289)
.. ..++++.+ +.+.+-.. ....+-+++.+.|...++.+||-.
T Consensus 269 ~~Lrelgvd~vtigqyL~Ps~~h~~v~~~v~p~~f~~~~~~~~~~gf~~v~sgp~vr 325 (349)
T PLN02428 269 EDLRAAGVDVVTFGQYLRPTKRHLPVKEYVTPEKFEFWREYGEEMGFRYVASGPLVR 325 (349)
T ss_pred HHHHHcCCCEEeeccccCCCcceeeeecccCHHHHHHHHHHHHHcCCceEEecCccc
Confidence 32 33333322 22322222 225677888899999998888864
No 218
>PF00388 PI-PLC-X: Phosphatidylinositol-specific phospholipase C, X domain This entry is for the whole phospholipase C protein; InterPro: IPR000909 Phosphatidylinositol-specific phospholipase C (3.1.4.11 from EC), a eukaryotic intracellular enzyme, plays an important role in signal transduction processes []. It catalyzes the hydrolysis of 1-phosphatidyl-D-myo-inositol-3,4,5-triphosphate into the second messenger molecules diacylglycerol and inositol-1,4,5-triphosphate. This catalytic process is tightly regulated by reversible phosphorylation and binding of regulatory proteins [, , ]. In mammals, there are at least 6 different isoforms of PI-PLC, they differ in their domain structure, their regulation, and their tissue distribution. Lower eukaryotes also possess multiple isoforms of PI-PLC. All eukaryotic PI-PLCs contain two regions of homology, sometimes referred to as the 'X-box' and 'Y-box'. The order of these two regions is always the same (NH2-X-Y-COOH), but the spacing is variable. In most isoforms, the distance between these two regions is only 50-100 residues but in the gamma isoforms one PH domain, two SH2 domains, and one SH3 domain are inserted between the two PLC-specific domains. The two conserved regions have been shown to be important for the catalytic activity. By profile analysis, we could show that sequences with significant similarity to the X-box domain occur also in prokaryotic and trypanosome PI-specific phospholipases C. Apart from this region, the prokaryotic enzymes show no similarity to their eukaryotic counterparts.; GO: 0004629 phospholipase C activity, 0006629 lipid metabolic process, 0035556 intracellular signal transduction; PDB: 2FJU_B 2ZKM_X 3V18_A 3V1H_A 3V16_A 3QR1_D 3EA3_A 3EA1_A 2OR2_A 1T6M_B ....
Probab=30.00 E-value=41 Score=26.18 Aligned_cols=22 Identities=27% Similarity=0.333 Sum_probs=15.0
Q ss_pred HHHHHHHHHcCCCeEeCCcCcC
Q 022968 45 CSIIKETFNRGITLFDTSDVYG 66 (289)
Q Consensus 45 ~~~l~~A~~~Gi~~~DtA~~Yg 66 (289)
...+..+++.|||+||---.++
T Consensus 29 ~~~i~~QL~~GiR~lDlrv~~~ 50 (146)
T PF00388_consen 29 SWSIREQLESGIRYLDLRVWDG 50 (146)
T ss_dssp SHHHHHHHHTT--EEEEEEEEE
T ss_pred hHhHHHHHhccCceEEEEEEcC
Confidence 5578999999999998554443
No 219
>PRK00208 thiG thiazole synthase; Reviewed
Probab=29.97 E-value=3.7e+02 Score=23.31 Aligned_cols=105 Identities=13% Similarity=0.060 Sum_probs=67.4
Q ss_pred CCCHHHHHHHHHHHHHHcCCCcccEEeecCCCCC-CCHHHHHHHHHHHHHcCccceeecCCCCHHHHHHHHccCCceEEe
Q 022968 106 KGSPEYVRKCCEASLKRLDVDYIDLYYQHRVDTS-VSIEDTMGELKKLVEEGKIKYIGLSEASADTIRRAHAVHPITAVQ 184 (289)
Q Consensus 106 ~~~~~~i~~~~~~sL~~L~~~~iDl~~lh~~~~~-~~~~~~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~~~~~~~~~~q 184 (289)
..+.+...+-.+-..+-++++.|=|=.+..+... -+..+++++.++|+++|.+-. =+++-++...+++.+. .+++++
T Consensus 72 ~~ta~eAv~~a~lare~~~~~~iKlEVi~d~~~llpd~~~tv~aa~~L~~~Gf~vl-pyc~~d~~~ak~l~~~-G~~~vm 149 (250)
T PRK00208 72 CRTAEEAVRTARLAREALGTNWIKLEVIGDDKTLLPDPIETLKAAEILVKEGFVVL-PYCTDDPVLAKRLEEA-GCAAVM 149 (250)
T ss_pred CCCHHHHHHHHHHHHHHhCCCeEEEEEecCCCCCCcCHHHHHHHHHHHHHCCCEEE-EEeCCCHHHHHHHHHc-CCCEeC
Confidence 3567777777778888889998888777766543 346789999999999998653 3566666666666554 334442
Q ss_pred ccCCCCCcc---hhhhhHHHHHH-hCCeEEEc
Q 022968 185 MEYSLWTRE---IEDDIIPLCRE-LGIGIVAY 212 (289)
Q Consensus 185 ~~~~~~~~~---~~~~~~~~~~~-~gi~v~a~ 212 (289)
--=.+.-.. ...++++...+ .++.|++-
T Consensus 150 Plg~pIGsg~gi~~~~~i~~i~e~~~vpVIve 181 (250)
T PRK00208 150 PLGAPIGSGLGLLNPYNLRIIIEQADVPVIVD 181 (250)
T ss_pred CCCcCCCCCCCCCCHHHHHHHHHhcCCeEEEe
Confidence 211121111 01455666655 48888873
No 220
>cd00019 AP2Ec AP endonuclease family 2; These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites; the alignment also contains hexulose-6-phosphate isomerases, enzymes that catalyze the epimerization of D-arabino-6-hexulose 3-phosphate to D-fructose 6-phosphate, via cleaving the phosphoesterbond with the sugar.
Probab=29.82 E-value=3.6e+02 Score=23.22 Aligned_cols=23 Identities=17% Similarity=0.096 Sum_probs=14.8
Q ss_pred chHHHHHHHHHHHHHHHHhCCCH
Q 022968 245 NLEKNKLLYTRLETLAAKYGCTT 267 (289)
Q Consensus 245 ~~~~~~~~~~~l~~ia~~~g~s~ 267 (289)
.++.....+.++.++|+++|++.
T Consensus 117 ~~~~~~~~l~~l~~~a~~~gi~l 139 (279)
T cd00019 117 GLKRVIEALNELIDKAETKGVVI 139 (279)
T ss_pred HHHHHHHHHHHHHHhccCCCCEE
Confidence 34555666666666667777765
No 221
>PF13467 RHH_4: Ribbon-helix-helix domain; PDB: 3KK4_C.
Probab=29.37 E-value=66 Score=21.73 Aligned_cols=27 Identities=22% Similarity=0.272 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHhC
Q 022968 252 LYTRLETLAAKYGCTTPQLALAWLLHQ 278 (289)
Q Consensus 252 ~~~~l~~ia~~~g~s~~q~al~w~l~~ 278 (289)
-++.|++||++.|+|.++++-..-..+
T Consensus 22 FW~~L~eiA~~~g~s~~~li~~id~~r 48 (67)
T PF13467_consen 22 FWDALEEIAAREGLSLNALIAEIDARR 48 (67)
T ss_dssp HHHHHHHHHHHTT--HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHcC
Confidence 357899999999999999887765544
No 222
>CHL00076 chlB photochlorophyllide reductase subunit B
Probab=29.32 E-value=5.3e+02 Score=24.90 Aligned_cols=57 Identities=14% Similarity=0.181 Sum_probs=31.7
Q ss_pred cccEEeecCCCCCCC-HHHHHHHHHHHH------------------HcCccceeecCC------CCHHHHHHHHccCCce
Q 022968 127 YIDLYYQHRVDTSVS-IEDTMGELKKLV------------------EEGKIKYIGLSE------ASADTIRRAHAVHPIT 181 (289)
Q Consensus 127 ~iDl~~lh~~~~~~~-~~~~~~~l~~l~------------------~~G~ir~iGvs~------~~~~~l~~~~~~~~~~ 181 (289)
.++++.+|.|..... ....-.+++.++ .+++|.-||.++ .+...++++++...+.
T Consensus 116 ~~pVi~v~t~~f~g~~~~g~~~~l~~lv~~~~~~~~~~~~~~~~~~~~~~VNIIG~~~l~f~~~~Dl~eikrLL~~~Gi~ 195 (513)
T CHL00076 116 DSDVILADVNHYRVNELQAADRTLEQIVRFYLEKARKQGTLDQSKTDKPSVNIIGIFTLGFHNQHDCRELKRLLQDLGIE 195 (513)
T ss_pred CCCEEEeCCCCCcccHHHHHHHHHHHHHHHHhhcccccccccccCCCCCcEEEEecCCCCCCCcchHHHHHHHHHHCCCe
Confidence 368999999854422 212212233222 235688888764 2446677777665555
Q ss_pred EE
Q 022968 182 AV 183 (289)
Q Consensus 182 ~~ 183 (289)
++
T Consensus 196 vn 197 (513)
T CHL00076 196 IN 197 (513)
T ss_pred EE
Confidence 44
No 223
>TIGR01428 HAD_type_II 2-haloalkanoic acid dehalogenase, type II. Note that the Type I HAD enzymes have not yet been fully characterized, but clearly utilize a substantially different catalytic mechanism and are thus unlikely to be related.
Probab=29.30 E-value=1.4e+02 Score=24.08 Aligned_cols=64 Identities=20% Similarity=0.140 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHcCCCcc----cEEeecCCCCCCCHHHHHHHHHHHHHcCccceeecCCCCHHHHHHHHcc
Q 022968 112 VRKCCEASLKRLDVDYI----DLYYQHRVDTSVSIEDTMGELKKLVEEGKIKYIGLSEASADTIRRAHAV 177 (289)
Q Consensus 112 i~~~~~~sL~~L~~~~i----Dl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~~~~ 177 (289)
.++.++..++++|.+.- +.+.-.+ .......++.+.|+.|++.| ++-.-+||.+...+...++.
T Consensus 61 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~~~~~~~~~~L~~L~~~g-~~~~i~Sn~~~~~~~~~l~~ 128 (198)
T TIGR01428 61 TREALRYLLGRLGLEDDESAADRLAEAY-LRLPPHPDVPAGLRALKERG-YRLAILSNGSPAMLKSLVKH 128 (198)
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHH-hcCCCCCCHHHHHHHHHHCC-CeEEEEeCCCHHHHHHHHHH
Confidence 35566777777776521 1111111 11223456788899999987 55566788887776665553
No 224
>KOG1196 consensus Predicted NAD-dependent oxidoreductase [General function prediction only]
Probab=29.24 E-value=81 Score=28.25 Aligned_cols=99 Identities=20% Similarity=0.288 Sum_probs=54.6
Q ss_pred HHHHHHHHHHHcCCCe-EeCCcCcCCCChhHHHHHHHHhcCCCCCEEEEecccccccCCcccCCCCCHHHHHHHHHHHHH
Q 022968 43 VGCSIIKETFNRGITL-FDTSDVYGVDHDNEIMVGKALKQLPRDKIQLATKFGCFMLDGVSIGVKGSPEYVRKCCEASLK 121 (289)
Q Consensus 43 ~~~~~l~~A~~~Gi~~-~DtA~~Yg~~g~se~~lg~~l~~~~R~~~~I~tK~~~~~~~~~~~~~~~~~~~i~~~~~~sL~ 121 (289)
...+.|++....||.. || +=| |.--..+-..+ ..+.++.++.-+.....+ ++..+...-.-.-+
T Consensus 211 ~~~~aL~r~~P~GIDiYfe---NVG--G~~lDavl~nM--~~~gri~~CG~ISqYN~~--------~~~~~~~l~~ii~K 275 (343)
T KOG1196|consen 211 DLSAALKRCFPEGIDIYFE---NVG--GKMLDAVLLNM--NLHGRIAVCGMISQYNLE--------NPEGLHNLSTIIYK 275 (343)
T ss_pred CHHHHHHHhCCCcceEEEe---ccC--cHHHHHHHHhh--hhccceEeeeeehhcccc--------CCccccchhhheee
Confidence 5567777788888874 56 334 32222222223 367778887766532211 12223333334445
Q ss_pred HcCCCcccEEeecCCCCCCCHHHHHHHHHHHHHcCcccee
Q 022968 122 RLDVDYIDLYYQHRVDTSVSIEDTMGELKKLVEEGKIKYI 161 (289)
Q Consensus 122 ~L~~~~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~i 161 (289)
|+.+.. ++.+..-| ...+.++.|..+.++|||.+.
T Consensus 276 r~~iqg--flv~d~~d---~~~k~ld~l~~~ikegKI~y~ 310 (343)
T KOG1196|consen 276 RIRIQG--FLVSDYLD---KYPKFLDFLLPYIKEGKITYV 310 (343)
T ss_pred eEEeee--EEeechhh---hhHHHHHHHHHHHhcCceEEe
Confidence 555443 22222211 246788999999999999986
No 225
>TIGR01862 N2-ase-Ialpha nitrogenase component I, alpha chain. This model represents the alpha chain of all three varieties (Mo-Fe, V-Fe, and Fe-Fe) of component I of nitrogenase.
Probab=28.99 E-value=4.9e+02 Score=24.47 Aligned_cols=103 Identities=17% Similarity=0.089 Sum_probs=54.4
Q ss_pred cCcCCCChhHHHHHHHHhc----CCC-CCEEEEecccccccCCcccCCCCCHHHHHHHHHHHHHHcCCCcccEEeecCCC
Q 022968 63 DVYGVDHDNEIMVGKALKQ----LPR-DKIQLATKFGCFMLDGVSIGVKGSPEYVRKCCEASLKRLDVDYIDLYYQHRVD 137 (289)
Q Consensus 63 ~~Yg~~g~se~~lg~~l~~----~~R-~~~~I~tK~~~~~~~~~~~~~~~~~~~i~~~~~~sL~~L~~~~iDl~~lh~~~ 137 (289)
-.|| .+..|-++|++ .++ +-++|.|-+....- .-|.+.+-+.+ -++++ +.++.+|.|+
T Consensus 97 ~V~G----g~~~L~~aI~~~~~~~~p~~~I~V~~tC~~~li-------GdDi~~v~~~~---~~~~~---~pvi~v~t~g 159 (443)
T TIGR01862 97 IVFG----GEKKLKKLIHEAFTEFPLIKAISVYATCPTGLI-------GDDIEAVAKEV---SKEIG---KDVVAVNCPG 159 (443)
T ss_pred eeeC----cHHHHHHHHHHHHHhCCccceEEEECCChHHHh-------ccCHHHHHHHH---HHhcC---CCEEEEecCC
Confidence 3566 36667777765 344 55777776543221 11233333322 23333 6899999886
Q ss_pred CCCC-----HHHHHHH-HHHHH--------HcCccceeecCCC--CHHHHHHHHccCCceE
Q 022968 138 TSVS-----IEDTMGE-LKKLV--------EEGKIKYIGLSEA--SADTIRRAHAVHPITA 182 (289)
Q Consensus 138 ~~~~-----~~~~~~~-l~~l~--------~~G~ir~iGvs~~--~~~~l~~~~~~~~~~~ 182 (289)
.... ...+.++ ++.++ ++++|.-||-.++ +.+.++++++...+.+
T Consensus 160 f~g~~~~~G~~~a~~al~~~l~~~~~~~~~~~~~VNiig~~~~~~d~~el~~lL~~~Gl~v 220 (443)
T TIGR01862 160 FAGVSQSKGHHIANIAVINDKVGTREKEITTEYDVNIIGEYNIGGDAWVMRIYLEEMGIQV 220 (443)
T ss_pred ccCCccchHHHHHHHHHHHHHhCCCCcccCCCCeEEEEccCcCcccHHHHHHHHHHcCCeE
Confidence 5431 2223333 33443 2467888885554 3456777776644443
No 226
>PLN02540 methylenetetrahydrofolate reductase
Probab=28.87 E-value=5.7e+02 Score=25.13 Aligned_cols=159 Identities=13% Similarity=0.158 Sum_probs=83.4
Q ss_pred HHHHHHHHHHHHHcCCCeEeCCcCcCCCChhHHHHHHHHhcCCCC-CEEEEecccccccCCcccCCCCCHHHHHHHHHHH
Q 022968 41 HEVGCSIIKETFNRGITLFDTSDVYGVDHDNEIMVGKALKQLPRD-KIQLATKFGCFMLDGVSIGVKGSPEYVRKCCEAS 119 (289)
Q Consensus 41 ~~~~~~~l~~A~~~Gi~~~DtA~~Yg~~g~se~~lg~~l~~~~R~-~~~I~tK~~~~~~~~~~~~~~~~~~~i~~~~~~s 119 (289)
.++..+.+++-.+.|-.|+|....-|- ..++..+.-+.. ..++ .+-.+-.+... +.+...+...++..
T Consensus 14 ~~nL~~~~~rl~~~~P~FisVT~gAgG-st~~~Tl~la~~-lq~~~Gie~i~HLTCr---------d~n~~~L~~~L~~a 82 (565)
T PLN02540 14 VDNLFERMDRMVAHGPLFCDITWGAGG-STADLTLDIANR-MQNMICVETMMHLTCT---------NMPVEKIDHALETI 82 (565)
T ss_pred HHHHHHHHHHHhccCCCEEEeCCCCCC-CcHHHHHHHHHH-HHHhcCCCeeEEeeec---------CCCHHHHHHHHHHH
Confidence 345566666667889999997655442 234444433322 1111 22222222221 34666777777555
Q ss_pred HHHcCCCcccEEeecCCCC-C--------CCHHHHHHHHHHHHHc-CccceeecCCCCH------------------HHH
Q 022968 120 LKRLDVDYIDLYYQHRVDT-S--------VSIEDTMGELKKLVEE-GKIKYIGLSEASA------------------DTI 171 (289)
Q Consensus 120 L~~L~~~~iDl~~lh~~~~-~--------~~~~~~~~~l~~l~~~-G~ir~iGvs~~~~------------------~~l 171 (289)
+.+|+. .++.|-...+ . ..+..+.+.++.+++. |..-.|||..+.- ..+
T Consensus 83 -~~~GIr--NILALrGDpp~~~d~~~~~~g~F~~A~dLV~~Ir~~~gd~f~IgVAGYPEgHpe~~~~~~~~~~~~~~~dl 159 (565)
T PLN02540 83 -KSNGIQ--NILALRGDPPHGQDKFVQVEGGFACALDLVKHIRSKYGDYFGITVAGYPEAHPDVIGGDGLATPEAYQKDL 159 (565)
T ss_pred -HHCCCC--EEEEECCCCCCCCCCcCCCCCCcccHHHHHHHHHHhCCCCceEEEeCCCCCCCcccccccccCCCChHHHH
Confidence 778875 4455543211 1 1223355555555554 4466788875421 123
Q ss_pred HHHHc---c-CCceEEeccCCCCCcchhhhhHHHHHHhCCeEEEcccCccccC
Q 022968 172 RRAHA---V-HPITAVQMEYSLWTREIEDDIIPLCRELGIGIVAYSPLGRGFF 220 (289)
Q Consensus 172 ~~~~~---~-~~~~~~q~~~~~~~~~~~~~~~~~~~~~gi~v~a~~pl~~G~L 220 (289)
..+.+ . ..|.+-|.-|+. +.-.+.++.|++.||.+ |+--|++
T Consensus 160 ~~Lk~KvdAGAdFiITQlfFD~---d~f~~f~~~~r~~Gi~v----PIipGIm 205 (565)
T PLN02540 160 AYLKEKVDAGADLIITQLFYDT---DIFLKFVNDCRQIGITC----PIVPGIM 205 (565)
T ss_pred HHHHHHHHcCCCEEeeccccCH---HHHHHHHHHHHhcCCCC----CEEeeec
Confidence 33222 2 456677887775 22257888899998543 4444553
No 227
>cd01821 Rhamnogalacturan_acetylesterase_like Rhamnogalacturan_acetylesterase_like subgroup of SGNH-hydrolases. Rhamnogalacturan acetylesterase removes acetyl esters from rhamnogalacturonan substrates, and renders them susceptible to degradation by rhamnogalacturonases. Rhamnogalacturonans are highly branched regions in pectic polysaccharides, consisting of repeating -(1,2)-L-Rha-(1,4)-D-GalUA disaccharide units, with many rhamnose residues substituted by neutral oligosaccharides such as arabinans, galactans and arabinogalactans. Extracellular enzymes participating in the degradation of plant cell wall polymers, such as Rhamnogalacturonan acetylesterase, would typically be found in saprophytic and plant pathogenic fungi and bacteria.
Probab=28.60 E-value=3.1e+02 Score=22.01 Aligned_cols=53 Identities=19% Similarity=0.167 Sum_probs=33.1
Q ss_pred hhhHHHHHHhCCeEEEcccCccccCCCCCCCCCCCcchhhhcCCCCCccchHHHHHHHHHHHHHHHHhCCCH
Q 022968 196 DDIIPLCRELGIGIVAYSPLGRGFFAGKAVVESLPSESILAMHPRFSGENLEKNKLLYTRLETLAAKYGCTT 267 (289)
Q Consensus 196 ~~~~~~~~~~gi~v~a~~pl~~G~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ia~~~g~s~ 267 (289)
.++++.++++|..++-.+|....-+... . ...+......+.++++|+++|+..
T Consensus 97 ~~ii~~~~~~~~~~il~tp~~~~~~~~~---------~----------~~~~~~~~~~~~~~~~a~~~~~~~ 149 (198)
T cd01821 97 RRYIAEARAKGATPILVTPVTRRTFDEG---------G----------KVEDTLGDYPAAMRELAAEEGVPL 149 (198)
T ss_pred HHHHHHHHHCCCeEEEECCccccccCCC---------C----------cccccchhHHHHHHHHHHHhCCCE
Confidence 5688889999999888887642111000 0 001123445578899999999864
No 228
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain. This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex
Probab=28.45 E-value=3.6e+02 Score=23.51 Aligned_cols=100 Identities=14% Similarity=0.117 Sum_probs=51.2
Q ss_pred CCHHHHHHHHHHHHHHcCCCcccEEeecCCCC-C----CCHHHHHHHHHHHHHcC---ccce-------eecCCCCHH--
Q 022968 107 GSPEYVRKCCEASLKRLDVDYIDLYYQHRVDT-S----VSIEDTMGELKKLVEEG---KIKY-------IGLSEASAD-- 169 (289)
Q Consensus 107 ~~~~~i~~~~~~sL~~L~~~~iDl~~lh~~~~-~----~~~~~~~~~l~~l~~~G---~ir~-------iGvs~~~~~-- 169 (289)
.+.+...+ +-..|.++|+++|++-. |.. . ...++-|+.++++.+.. ++.. +|++.++.+
T Consensus 18 ~~~~~~~~-ia~~L~~~Gv~~iE~G~---~a~~~~~~~~~~~~~~e~i~~~~~~~~~~~l~~~~r~~~~~~~~~~p~~~~ 93 (275)
T cd07937 18 MRTEDMLP-IAEALDEAGFFSLEVWG---GATFDVCMRFLNEDPWERLRELRKAMPNTPLQMLLRGQNLVGYRHYPDDVV 93 (275)
T ss_pred ccHHHHHH-HHHHHHHcCCCEEEccC---CcchhhhccccCCCHHHHHHHHHHhCCCCceehhcccccccCccCCCcHHH
Confidence 44555444 46789999999999862 221 0 00112255555554432 2222 233333332
Q ss_pred --HHHHHHccCCceEEeccCCCCCcchhhhhHHHHHHhCCeEEE
Q 022968 170 --TIRRAHAVHPITAVQMEYSLWTREIEDDIIPLCRELGIGIVA 211 (289)
Q Consensus 170 --~l~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~gi~v~a 211 (289)
.++.+.+ ..++.+.+.+.+.+-+.-.+.+++++++|+.+..
T Consensus 94 ~~di~~~~~-~g~~~iri~~~~~~~~~~~~~i~~ak~~G~~v~~ 136 (275)
T cd07937 94 ELFVEKAAK-NGIDIFRIFDALNDVRNLEVAIKAVKKAGKHVEG 136 (275)
T ss_pred HHHHHHHHH-cCCCEEEEeecCChHHHHHHHHHHHHHCCCeEEE
Confidence 2333333 3455555544333322236788999999987764
No 229
>TIGR01163 rpe ribulose-phosphate 3-epimerase. This family consists of Ribulose-phosphate 3-epimerase, also known as pentose-5-phosphate 3-epimerase (PPE). PPE converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. It has been found in a wide range of bacteria, archebacteria, fungi and plants.
Probab=28.42 E-value=3.3e+02 Score=22.18 Aligned_cols=99 Identities=11% Similarity=0.071 Sum_probs=54.6
Q ss_pred CCHHHHHHHHHHHHHHcCCCcccEEeecCCCCCCCHHHHHHHHHHHHHcCccce-eecCCCCHHHHHHHHccCCceEEec
Q 022968 107 GSPEYVRKCCEASLKRLDVDYIDLYYQHRVDTSVSIEDTMGELKKLVEEGKIKY-IGLSEASADTIRRAHAVHPITAVQM 185 (289)
Q Consensus 107 ~~~~~i~~~~~~sL~~L~~~~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~-iGvs~~~~~~l~~~~~~~~~~~~q~ 185 (289)
.++..+.+.++ .+.+.|.|++-+-....+... .....++.++++++...+.- +.+-..+.....+.+.....+.+|+
T Consensus 8 ~~~~~~~~~~~-~~~~~g~d~i~~~~~Dg~~~~-~~~~~~~~v~~i~~~~~~~v~v~lm~~~~~~~~~~~~~~gadgv~v 85 (210)
T TIGR01163 8 ADFARLGEEVK-AVEEAGADWIHVDVMDGHFVP-NLTFGPPVLEALRKYTDLPIDVHLMVENPDRYIEDFAEAGADIITV 85 (210)
T ss_pred CCHHHHHHHHH-HHHHcCCCEEEEcCCCCCCCC-CcccCHHHHHHHHhcCCCcEEEEeeeCCHHHHHHHHHHcCCCEEEE
Confidence 45566666664 455788877666533333211 11134566666665433221 5555555555444444556678887
Q ss_pred cCCCCCcchhhhhHHHHHHhCCeE
Q 022968 186 EYSLWTREIEDDIIPLCRELGIGI 209 (289)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~gi~v 209 (289)
+.... ......++.++++|+.+
T Consensus 86 h~~~~--~~~~~~~~~~~~~g~~~ 107 (210)
T TIGR01163 86 HPEAS--EHIHRLLQLIKDLGAKA 107 (210)
T ss_pred ccCCc--hhHHHHHHHHHHcCCcE
Confidence 65432 22246778888888764
No 230
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=28.38 E-value=1.8e+02 Score=24.07 Aligned_cols=73 Identities=15% Similarity=-0.006 Sum_probs=45.0
Q ss_pred hhHHHHHHhCCeEEE-cccCccccCCCCCC-CCCCCcchhhhcCCCCCccchHHHHHHHHHHHHHHHHhCCCHHHHHHHH
Q 022968 197 DIIPLCRELGIGIVA-YSPLGRGFFAGKAV-VESLPSESILAMHPRFSGENLEKNKLLYTRLETLAAKYGCTTPQLALAW 274 (289)
Q Consensus 197 ~~~~~~~~~gi~v~a-~~pl~~G~L~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ia~~~g~s~~q~al~w 274 (289)
+--+..+++||.++. +-..++|+..+-.. ....++ .. ....+.....+.++-+.++++++++-++|+..
T Consensus 123 ~~~~~L~~~Gi~~~Pd~~~NaGGv~~~~~e~~~~~~~-~~--------~~~~~~~~~~~~~v~~~a~~~~~~~~~aA~~~ 193 (200)
T cd01075 123 RHGQMLHERGILYAPDYVVNAGGLINVADELYGGNEA-RV--------LAKVEAIYDTLLEIFAQAKQDGITTLEAADRM 193 (200)
T ss_pred hHHHHHHHCCCEEeCceeeeCcCceeehhHHhCCcHH-HH--------HHHHHHHHHHHHHHHHHHHHhCcCHHHHHHHH
Confidence 456677889999887 66667776543210 000000 00 11234445666777788999999999999887
Q ss_pred HHhC
Q 022968 275 LLHQ 278 (289)
Q Consensus 275 ~l~~ 278 (289)
++.+
T Consensus 194 a~~r 197 (200)
T cd01075 194 AEER 197 (200)
T ss_pred HHHH
Confidence 7653
No 231
>cd01301 rDP_like renal dipeptidase (rDP), best studied in mammals and also called membrane or microsomal dipeptidase, is a membrane-bound glycoprotein hydrolyzing dipeptides and is involved in hydrolytic metabolism of penem and carbapenem beta-lactam antibiotics. Although the biological function of the enzyme is still unknown, it has been suggested to play a role in the renal glutathione metabolism.
Probab=28.28 E-value=3.6e+02 Score=24.07 Aligned_cols=107 Identities=17% Similarity=0.202 Sum_probs=67.1
Q ss_pred HHHHHHHHHHHHcCCCeEeCCcCcCCCChhHHHHHHHHhcCCCCCEEEEecccccccCCcccCCCCCHHHHHHHHHHHHH
Q 022968 42 EVGCSIIKETFNRGITLFDTSDVYGVDHDNEIMVGKALKQLPRDKIQLATKFGCFMLDGVSIGVKGSPEYVRKCCEASLK 121 (289)
Q Consensus 42 ~~~~~~l~~A~~~Gi~~~DtA~~Yg~~g~se~~lg~~l~~~~R~~~~I~tK~~~~~~~~~~~~~~~~~~~i~~~~~~sL~ 121 (289)
+..+++|+...+.|+ .+|+|.. |++.+-.+++- . +.-+|+|......... ...+.+.+.++ ..-+
T Consensus 154 ~~G~~vv~~mn~lGm-iiDvSH~------s~~~~~dv~~~-s-~~PviaSHsn~ral~~--h~RNltD~~i~----~ia~ 218 (309)
T cd01301 154 PFGKELVREMNRLGI-IIDLSHL------SERTFWDVLDI-S-NAPVIASHSNARALCD--HPRNLTDAQLK----AIAE 218 (309)
T ss_pred HHHHHHHHHHHHcCC-EEEcCCC------CHHHHHHHHHh-c-CCCEEEeccChHHhcC--CCCCCCHHHHH----HHHH
Confidence 457899999999999 9999954 77888888874 2 2347888765433211 11234444443 3333
Q ss_pred HcCCCcccEEeecC---CCCCCCHHHHHHHHHHHHHcCccceeecCC
Q 022968 122 RLDVDYIDLYYQHR---VDTSVSIEDTMGELKKLVEEGKIKYIGLSE 165 (289)
Q Consensus 122 ~L~~~~iDl~~lh~---~~~~~~~~~~~~~l~~l~~~G~ir~iGvs~ 165 (289)
+=|+ |-+.+.-. .+....+++.++.++.+.+..=+.++|+.+
T Consensus 219 ~GGv--igi~~~~~fl~~~~~~~~~~~~~hi~~i~~l~G~dhVgiGs 263 (309)
T cd01301 219 TGGV--IGVNFYPAFLSPGADATLDDVVRHIDYIVDLIGIDHVGLGS 263 (309)
T ss_pred cCCE--EEEeeeHHHhCCCCCCCHHHHHHHHHHHHHhcCCCeEEECc
Confidence 3332 22222211 123456788899999988887799999965
No 232
>COG0218 Predicted GTPase [General function prediction only]
Probab=28.24 E-value=3.6e+02 Score=22.57 Aligned_cols=100 Identities=15% Similarity=0.003 Sum_probs=68.0
Q ss_pred HHHHHHHHHHHHc------CCCeEeCCcCcCCCChhHHHHHHHHhcCCCCCEEEEecccccccCCcccCCCCCHHHHHHH
Q 022968 42 EVGCSIIKETFNR------GITLFDTSDVYGVDHDNEIMVGKALKQLPRDKIQLATKFGCFMLDGVSIGVKGSPEYVRKC 115 (289)
Q Consensus 42 ~~~~~~l~~A~~~------Gi~~~DtA~~Yg~~g~se~~lg~~l~~~~R~~~~I~tK~~~~~~~~~~~~~~~~~~~i~~~ 115 (289)
+...+++...++. .+-.+|.-..--. .+..+=++|......-++|.||.-- .......+.
T Consensus 91 e~w~~~i~~YL~~R~~L~~vvlliD~r~~~~~---~D~em~~~l~~~~i~~~vv~tK~DK-----------i~~~~~~k~ 156 (200)
T COG0218 91 EKWKKLIEEYLEKRANLKGVVLLIDARHPPKD---LDREMIEFLLELGIPVIVVLTKADK-----------LKKSERNKQ 156 (200)
T ss_pred HHHHHHHHHHHhhchhheEEEEEEECCCCCcH---HHHHHHHHHHHcCCCeEEEEEcccc-----------CChhHHHHH
Confidence 4456666665543 4556786554432 6778888988878888999999742 344556677
Q ss_pred HHHHHHHcCCCcccE--EeecCCCCCCCHHHHHHHHHHHHHc
Q 022968 116 CEASLKRLDVDYIDL--YYQHRVDTSVSIEDTMGELKKLVEE 155 (289)
Q Consensus 116 ~~~sL~~L~~~~iDl--~~lh~~~~~~~~~~~~~~l~~l~~~ 155 (289)
+....+.|+.+..|- +++........++++++.+.+....
T Consensus 157 l~~v~~~l~~~~~~~~~~~~~ss~~k~Gi~~l~~~i~~~~~~ 198 (200)
T COG0218 157 LNKVAEELKKPPPDDQWVVLFSSLKKKGIDELKAKILEWLKE 198 (200)
T ss_pred HHHHHHHhcCCCCccceEEEEecccccCHHHHHHHHHHHhhc
Confidence 888888888877765 4555545556688888887776543
No 233
>COG4321 Uncharacterized protein related to arylsulfate sulfotransferase involved in siderophore biosynthesis [General function prediction only]
Probab=28.08 E-value=1.2e+02 Score=22.20 Aligned_cols=18 Identities=22% Similarity=0.314 Sum_probs=15.1
Q ss_pred HHHHHHHHHHhCCCHHHH
Q 022968 253 YTRLETLAAKYGCTTPQL 270 (289)
Q Consensus 253 ~~~l~~ia~~~g~s~~q~ 270 (289)
+..|++||++-++|.+|+
T Consensus 36 W~~L~eIA~~r~lt~a~L 53 (102)
T COG4321 36 WDILKEIAERRKLTVAAL 53 (102)
T ss_pred HHHHHHHHHhcCCcHHHH
Confidence 468889999999988887
No 234
>PRK03995 hypothetical protein; Provisional
Probab=28.01 E-value=2.9e+02 Score=24.22 Aligned_cols=83 Identities=17% Similarity=0.150 Sum_probs=50.0
Q ss_pred ccCccccccccCCCCCCCCCCHHHHHHHHHHHHHcCCCeEeCCcCcCCCChhHHHHHHHHhcC-CCCCEEEEeccccccc
Q 022968 20 EVSRLGFGCGGLSGIYNKPLSHEVGCSIIKETFNRGITLFDTSDVYGVDHDNEIMVGKALKQL-PRDKIQLATKFGCFML 98 (289)
Q Consensus 20 ~vs~lg~G~~~~~~~~~~~~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~~g~se~~lg~~l~~~-~R~~~~I~tK~~~~~~ 98 (289)
..+.||||...+ +.+.-+.|++.++.+=...+.|.-+..++..+-+++... .+-+..+.=+=
T Consensus 181 ~~~~iGiGGgHY------------apr~T~~~l~~~~~~GHi~pky~l~~~~~~~i~~a~~ks~~~~~~~~id~K----- 243 (267)
T PRK03995 181 FKPAIGIGGGHY------------APKFTKLALESEYCFGHIIPKYALDHLSEEVLIQAIEKSTPEIDRIVIDWK----- 243 (267)
T ss_pred CCEEEEECCCCc------------cHHHHHHHhhCCeeEEeEccccchhcCCHHHHHHHHHhccCCCCEEEEecC-----
Confidence 356778875543 233455667777766666667764335677788888752 33333333221
Q ss_pred CCcccCCCCCHHHHHHHHHHHHHHcCCCc
Q 022968 99 DGVSIGVKGSPEYVRKCCEASLKRLDVDY 127 (289)
Q Consensus 99 ~~~~~~~~~~~~~i~~~~~~sL~~L~~~~ 127 (289)
......++.+.+.|+.+|++.
T Consensus 244 --------~~k~~~r~~i~~~le~~gi~v 264 (267)
T PRK03995 244 --------GVKSEDRERIIEFLEELGIEV 264 (267)
T ss_pred --------CCCHHHHHHHHHHHHHCCCeE
Confidence 123456788888899998764
No 235
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=27.78 E-value=1.6e+02 Score=25.96 Aligned_cols=61 Identities=16% Similarity=0.137 Sum_probs=45.6
Q ss_pred HHHHHHHHHHcCCCcccEEeecCCCCCCCH---HHHHHHHHHHHHcCccceeecCCCCHHHHHHHHc
Q 022968 113 RKCCEASLKRLDVDYIDLYYQHRVDTSVSI---EDTMGELKKLVEEGKIKYIGLSEASADTIRRAHA 176 (289)
Q Consensus 113 ~~~~~~sL~~L~~~~iDl~~lh~~~~~~~~---~~~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~~~ 176 (289)
++.+.-.+.-++ ..++++|..|....+. .+.|+.+.++.++|. +.|=+|+|..+.++..++
T Consensus 142 kqrl~ia~aL~~--~P~lliLDEPt~GLDp~~~~~~~~~l~~l~~~g~-~tvlissH~l~e~~~~~d 205 (293)
T COG1131 142 KQRLSIALALLH--DPELLILDEPTSGLDPESRREIWELLRELAKEGG-VTILLSTHILEEAEELCD 205 (293)
T ss_pred HHHHHHHHHHhc--CCCEEEECCCCcCCCHHHHHHHHHHHHHHHhCCC-cEEEEeCCcHHHHHHhCC
Confidence 333333333343 4699999999876554 478999999999997 678899999999888866
No 236
>PF09989 DUF2229: CoA enzyme activase uncharacterised domain (DUF2229); InterPro: IPR018709 Proteins containing this domain include various bacterial hypothetical proteins, as well as CoA enzyme activases. The exact function of this domain has not, as yet, been defined.
Probab=27.49 E-value=2.1e+02 Score=24.16 Aligned_cols=33 Identities=21% Similarity=0.329 Sum_probs=26.9
Q ss_pred ceEEeccCCCCCcchhhhhHHHHHHhCCeEEEc
Q 022968 180 ITAVQMEYSLWTREIEDDIIPLCRELGIGIVAY 212 (289)
Q Consensus 180 ~~~~q~~~~~~~~~~~~~~~~~~~~~gi~v~a~ 212 (289)
+.++=-+||+++.....++.+..++.|+.|+..
T Consensus 186 Ivl~GrpY~~~D~~in~~I~~~l~~~G~~vit~ 218 (221)
T PF09989_consen 186 IVLLGRPYNIYDPFINMGIPDKLRSLGVPVITE 218 (221)
T ss_pred EEEEcCCCcCCCcccCCchHHHHHHCCCeeeCc
Confidence 444455899998887889999999999999864
No 237
>cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain. Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th
Probab=27.49 E-value=3.8e+02 Score=23.22 Aligned_cols=98 Identities=18% Similarity=0.229 Sum_probs=56.2
Q ss_pred CCHHHHHHHHHHHHHHcCCCcccEEeecCCCCCCCHHHHHHHHHHHHHcCc-cceeecCCCCHHHHHHHHccCCceEEec
Q 022968 107 GSPEYVRKCCEASLKRLDVDYIDLYYQHRVDTSVSIEDTMGELKKLVEEGK-IKYIGLSEASADTIRRAHAVHPITAVQM 185 (289)
Q Consensus 107 ~~~~~i~~~~~~sL~~L~~~~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~-ir~iGvs~~~~~~l~~~~~~~~~~~~q~ 185 (289)
++.+...+-+ +.|.++|++.|.+-. |.. ..+.++..+.+.+.++ .+-.+....+.+.++.+.+. .++.+.+
T Consensus 19 ~s~~~k~~i~-~~L~~~Gv~~IEvG~---P~~---~~~~~~~~~~l~~~~~~~~v~~~~r~~~~di~~a~~~-g~~~i~i 90 (262)
T cd07948 19 FDTEDKIEIA-KALDAFGVDYIELTS---PAA---SPQSRADCEAIAKLGLKAKILTHIRCHMDDARIAVET-GVDGVDL 90 (262)
T ss_pred CCHHHHHHHH-HHHHHcCCCEEEEEC---CCC---CHHHHHHHHHHHhCCCCCcEEEEecCCHHHHHHHHHc-CcCEEEE
Confidence 4555544444 569999999888863 432 2344555566655444 44455566777888888775 2233333
Q ss_pred cC--CC------CCcch------hhhhHHHHHHhCCeEEEc
Q 022968 186 EY--SL------WTREI------EDDIIPLCRELGIGIVAY 212 (289)
Q Consensus 186 ~~--~~------~~~~~------~~~~~~~~~~~gi~v~a~ 212 (289)
.+ |. +.... -.+.+++++++|+.|...
T Consensus 91 ~~~~S~~~~~~~~~~~~~e~~~~~~~~i~~a~~~G~~v~~~ 131 (262)
T cd07948 91 VFGTSPFLREASHGKSITEIIESAVEVIEFVKSKGIEVRFS 131 (262)
T ss_pred EEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEE
Confidence 22 11 11111 145678889999876543
No 238
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=27.42 E-value=7e+02 Score=25.73 Aligned_cols=95 Identities=12% Similarity=0.076 Sum_probs=51.8
Q ss_pred CHHHHHHHHHHHHHHcCCCcccEEeecCCCCCCCHHHHHHHHHHHHHc--CccceeecCCCCHHHHHHHHccCCceEEec
Q 022968 108 SPEYVRKCCEASLKRLDVDYIDLYYQHRVDTSVSIEDTMGELKKLVEE--GKIKYIGLSEASADTIRRAHAVHPITAVQM 185 (289)
Q Consensus 108 ~~~~i~~~~~~sL~~L~~~~iDl~~lh~~~~~~~~~~~~~~l~~l~~~--G~ir~iGvs~~~~~~l~~~~~~~~~~~~q~ 185 (289)
..+.+++-++.....-.....-+|+|+..+.. ..+.+++|.+..++ ..+++|-++|.....+..+... +.++
T Consensus 100 gVDdIReLIe~a~~~P~~gr~KVIIIDEah~L--T~~A~NALLKtLEEPP~~v~FILaTtd~~KIp~TIrSR----Cq~f 173 (830)
T PRK07003 100 GVDEMAALLERAVYAPVDARFKVYMIDEVHML--TNHAFNAMLKTLEEPPPHVKFILATTDPQKIPVTVLSR----CLQF 173 (830)
T ss_pred cHHHHHHHHHHHHhccccCCceEEEEeChhhC--CHHHHHHHHHHHHhcCCCeEEEEEECChhhccchhhhh----eEEE
Confidence 34556666655443322234568888876543 23567777766666 5899999998754444333332 3455
Q ss_pred cCCCCCcchh-hhhHHHHHHhCCe
Q 022968 186 EYSLWTREIE-DDIIPLCRELGIG 208 (289)
Q Consensus 186 ~~~~~~~~~~-~~~~~~~~~~gi~ 208 (289)
.|..+....- .-+...|++.||.
T Consensus 174 ~Fk~Ls~eeIv~~L~~Il~~EgI~ 197 (830)
T PRK07003 174 NLKQMPAGHIVSHLERILGEERIA 197 (830)
T ss_pred ecCCcCHHHHHHHHHHHHHHcCCC
Confidence 5555543211 2233345555543
No 239
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain. This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex
Probab=27.34 E-value=4.2e+02 Score=23.09 Aligned_cols=26 Identities=12% Similarity=0.018 Sum_probs=21.3
Q ss_pred CCCHHHHHHHHHHHHHcCCCeEeCCc
Q 022968 38 PLSHEVGCSIIKETFNRGITLFDTSD 63 (289)
Q Consensus 38 ~~~~~~~~~~l~~A~~~Gi~~~DtA~ 63 (289)
..+.++..++.....+.||..++...
T Consensus 17 ~~~~~~~~~ia~~L~~~Gv~~iE~G~ 42 (275)
T cd07937 17 RMRTEDMLPIAEALDEAGFFSLEVWG 42 (275)
T ss_pred eccHHHHHHHHHHHHHcCCCEEEccC
Confidence 34678888888888899999999864
No 240
>TIGR02814 pfaD_fam PfaD family protein. The protein PfaD is part of four gene locus, similar to polyketide biosynthesis systems, responsible for omega-3 polyunsaturated fatty acid biosynthesis in several high pressure and/or cold-adapted bacteria. Several other members of the seed alignment for this model are found in loci presumed to act in polyketide biosyntheses per se.
Probab=27.34 E-value=2.6e+02 Score=26.55 Aligned_cols=87 Identities=15% Similarity=0.166 Sum_probs=54.5
Q ss_pred HHHcCCCcccEEeecCCCC-CCCHHHHHHHHHHHHHcCccceeecCCCCHHHHHHHHcc-------CC-ceEEeccCCCC
Q 022968 120 LKRLDVDYIDLYYQHRVDT-SVSIEDTMGELKKLVEEGKIKYIGLSEASADTIRRAHAV-------HP-ITAVQMEYSLW 190 (289)
Q Consensus 120 L~~L~~~~iDl~~lh~~~~-~~~~~~~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~~~~-------~~-~~~~q~~~~~~ 190 (289)
.+.||++|. + +..|-. ... ..+....+-+.|-...+|....+++++++.+.. .+ |-+|-+ .++-
T Consensus 12 ~~~lgiryP-i--iqgpMa~GiS---s~eLVaAVs~AGgLG~lgag~l~~e~l~~~I~~ir~~~~~~p~fGVNL~-~~~~ 84 (444)
T TIGR02814 12 REDYGVRYA-Y--VAGAMANGIA---SAELVIAMGRAGILGFFGAGGLPLEEVEQAIHRIQQALPGGPAYGVNLI-HSPS 84 (444)
T ss_pred HHHhCCCCc-E--ECccccCCCC---CHHHHHHHHhCCceeeeCCCCCCHHHHHHHHHHHHHhcCCCCceEEEec-ccCC
Confidence 456777664 2 222221 111 234455677899999999999999988876543 24 555543 2222
Q ss_pred CcchhhhhHHHHHHhCCeEEEcc
Q 022968 191 TREIEDDIIPLCRELGIGIVAYS 213 (289)
Q Consensus 191 ~~~~~~~~~~~~~~~gi~v~a~~ 213 (289)
+...+.++++.|.++++.++..+
T Consensus 85 ~~~~e~~~v~l~l~~~V~~veas 107 (444)
T TIGR02814 85 DPALEWGLVDLLLRHGVRIVEAS 107 (444)
T ss_pred CcccHHHHHHHHHHcCCCEEEec
Confidence 22234578999999999987654
No 241
>PRK08446 coproporphyrinogen III oxidase; Provisional
Probab=27.18 E-value=1.5e+02 Score=26.90 Aligned_cols=60 Identities=15% Similarity=0.116 Sum_probs=37.1
Q ss_pred CCHHHHHHHHHHHHHHcCCCcccEEeecC-CCCC--------CCHHHHH-HHHHHHHHcCccceeecCCCCH
Q 022968 107 GSPEYVRKCCEASLKRLDVDYIDLYYQHR-VDTS--------VSIEDTM-GELKKLVEEGKIKYIGLSEASA 168 (289)
Q Consensus 107 ~~~~~i~~~~~~sL~~L~~~~iDl~~lh~-~~~~--------~~~~~~~-~~l~~l~~~G~ir~iGvs~~~~ 168 (289)
-+.+.+++.++..+ +++.+++.+|.|.- |... .+.++.+ .+.+.|.+.|. ..+++|||..
T Consensus 162 qt~~~~~~~l~~~~-~l~~~~is~y~L~~~~gT~l~~~~~~~~~~~~~~~~~~~~l~~~Gy-~~yeis~fa~ 231 (350)
T PRK08446 162 DNKKLLKEELKLAK-ELPINHLSAYSLTIEENTPFFEKNHKKKDDENLAKFFIEQLEELGF-KQYEISNFGK 231 (350)
T ss_pred CCHHHHHHHHHHHH-hcCCCEEEeccceecCCChhHHhhhcCCCHHHHHHHHHHHHHHCCC-cEEEeehhhC
Confidence 46777777776654 48888888877653 2111 1122333 45566777786 5689998864
No 242
>KOG2499 consensus Beta-N-acetylhexosaminidase [Carbohydrate transport and metabolism]
Probab=27.14 E-value=84 Score=29.93 Aligned_cols=45 Identities=24% Similarity=0.304 Sum_probs=35.3
Q ss_pred cccCcc-ccccccCCCCCCCCCCHHHHHHHHHHHHHcCCCe---EeCCcCcCC
Q 022968 19 LEVSRL-GFGCGGLSGIYNKPLSHEVGCSIIKETFNRGITL---FDTSDVYGV 67 (289)
Q Consensus 19 ~~vs~l-g~G~~~~~~~~~~~~~~~~~~~~l~~A~~~Gi~~---~DtA~~Yg~ 67 (289)
.+.|.| ..|+++....| +.+++.++++.|...|||. |||-.|=|+
T Consensus 230 ~~~PeL~~kGaYs~~~vY----T~eDv~evV~yarlRGIRVlpEfD~PgHt~s 278 (542)
T KOG2499|consen 230 PTFPELHRKGAYSPRHVY----TREDVSEVVEYARLRGIRVLPEFDTPGHTGS 278 (542)
T ss_pred CCchhhhhcCCCCcceee----cHHHHHHHHHHHHhccceeeecccCCccccc
Confidence 467788 88887654444 7899999999999999997 687766553
No 243
>COG3653 N-acyl-D-aspartate/D-glutamate deacylase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=27.12 E-value=5.5e+02 Score=24.42 Aligned_cols=84 Identities=12% Similarity=0.074 Sum_probs=49.9
Q ss_pred HHHHHHHHHHHcCCCeEe--------CCcCcCCCC---hhHHHHHHHHhc-CCCCCEEEEecccccccCCcccCCCCCHH
Q 022968 43 VGCSIIKETFNRGITLFD--------TSDVYGVDH---DNEIMVGKALKQ-LPRDKIQLATKFGCFMLDGVSIGVKGSPE 110 (289)
Q Consensus 43 ~~~~~l~~A~~~Gi~~~D--------tA~~Yg~~g---~se~~lg~~l~~-~~R~~~~I~tK~~~~~~~~~~~~~~~~~~ 110 (289)
...+++++|+|+|-=-+- |...|-++- ..+++.+.++.- .-+..+.-+|... -+..
T Consensus 183 aMaallreAlEaGalGmS~~~~~~~~tgd~~p~~~l~~~t~el~~la~~va~ag~~iLqst~d~------------~ega 250 (579)
T COG3653 183 AMAALLREALEAGALGMSMDAAIDKLTGDRYPSRALPFATWELRRLAISVARAGGRILQSTHDR------------DEGA 250 (579)
T ss_pred HHHHHHHHHHhccccccchhhhcccccccccCCcccCcchHHHHHHHHHHHHhcCceeEeeccc------------cchH
Confidence 458999999999876665 666665421 245666666542 2344444444321 2344
Q ss_pred HHHHHHHHHHHHcC-CCcccEEeecCCCC
Q 022968 111 YVRKCCEASLKRLD-VDYIDLYYQHRVDT 138 (289)
Q Consensus 111 ~i~~~~~~sL~~L~-~~~iDl~~lh~~~~ 138 (289)
.+.+.++++-+.-+ ...+-+.+.|.-+.
T Consensus 251 a~L~~l~~a~ri~~R~~~vr~v~s~~a~a 279 (579)
T COG3653 251 AALEALLEASRIGNRRKGVRMVMSHSADA 279 (579)
T ss_pred HHHHHHHHHHHhcCcccCceEEEeccccc
Confidence 55566666666553 34577888886544
No 244
>cd03324 rTSbeta_L-fuconate_dehydratase Human rTS beta is encoded by the rTS gene which, through alternative RNA splicing, also encodes rTS alpha whose mRNA is complementary to thymidylate synthase mRNA. rTS beta expression is associated with the production of small molecules that appear to mediate the down-regulation of thymidylate synthase protein by a novel intercellular signaling mechanism. A member of this family, from Xanthomonas, has been characterized to be a L-fuconate dehydratase. rTS beta belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=27.11 E-value=5.2e+02 Score=24.14 Aligned_cols=152 Identities=12% Similarity=0.102 Sum_probs=86.7
Q ss_pred CHHHHHHHHHHHHHcCCCeEeCCcCcCCCChhHHHHHHHHhcCCCCCEEEEecccccccCCcccCCCCCHHHHHHHHHHH
Q 022968 40 SHEVGCSIIKETFNRGITLFDTSDVYGVDHDNEIMVGKALKQLPRDKIQLATKFGCFMLDGVSIGVKGSPEYVRKCCEAS 119 (289)
Q Consensus 40 ~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~~g~se~~lg~~l~~~~R~~~~I~tK~~~~~~~~~~~~~~~~~~~i~~~~~~s 119 (289)
+.++..+....+++.|++.|=.-- |.+...+...=+++++.-.+++.|.-=.. ..++.+...+.+ +.
T Consensus 196 ~~~~~~~~a~~~~~~Gf~~~KiKv--g~~~~~d~~~v~avRe~vG~~~~L~vDaN----------~~w~~~~A~~~~-~~ 262 (415)
T cd03324 196 SDEKLRRLCKEALAQGFTHFKLKV--GADLEDDIRRCRLAREVIGPDNKLMIDAN----------QRWDVPEAIEWV-KQ 262 (415)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeC--CCCHHHHHHHHHHHHHhcCCCCeEEEECC----------CCCCHHHHHHHH-HH
Confidence 456667777888889999874321 11011112222344442223344433221 124554433333 23
Q ss_pred HHHcCCCcccEEeecCCCCCCCHHHHHHHHHHHHHcC----ccceeecCCCCHHHHHHHHccCCceEEeccCCCCCcc-h
Q 022968 120 LKRLDVDYIDLYYQHRVDTSVSIEDTMGELKKLVEEG----KIKYIGLSEASADTIRRAHAVHPITAVQMEYSLWTRE-I 194 (289)
Q Consensus 120 L~~L~~~~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G----~ir~iGvs~~~~~~l~~~~~~~~~~~~q~~~~~~~~~-~ 194 (289)
|+. .++.++..|-+. +-++.+.+|++.. .=-..|=|-++...+..+++...++++|....-.-.- .
T Consensus 263 L~~-----~~l~~iEEP~~~----~d~~~~~~L~~~~~~~~iPIa~gEs~~~~~~~~~ll~~~a~dil~~d~~~~GGit~ 333 (415)
T cd03324 263 LAE-----FKPWWIEEPTSP----DDILGHAAIRKALAPLPIGVATGEHCQNRVVFKQLLQAGAIDVVQIDSCRLGGVNE 333 (415)
T ss_pred hhc-----cCCCEEECCCCC----CcHHHHHHHHHhcccCCCceecCCccCCHHHHHHHHHcCCCCEEEeCccccCCHHH
Confidence 333 355566665432 2356666777653 2223344667888899998888899999987764321 2
Q ss_pred hhhhHHHHHHhCCeEEEcc
Q 022968 195 EDDIIPLCRELGIGIVAYS 213 (289)
Q Consensus 195 ~~~~~~~~~~~gi~v~a~~ 213 (289)
..++.+.|+.+|+.+....
T Consensus 334 ~~kia~lA~a~gi~~~pH~ 352 (415)
T cd03324 334 NLAVLLMAAKFGVPVCPHA 352 (415)
T ss_pred HHHHHHHHHHcCCeEEEcC
Confidence 2678999999999987653
No 245
>COG1523 PulA Type II secretory pathway, pullulanase PulA and related glycosidases [Carbohydrate transport and metabolism]
Probab=26.98 E-value=51 Score=33.02 Aligned_cols=77 Identities=18% Similarity=0.068 Sum_probs=49.2
Q ss_pred HHHHHHcCCCcccEEeecCCCCCCCHHHHHHHHHHHHHcCccceeecCCCCHHHHHHHHccCCceEEeccCCCCCcc-hh
Q 022968 117 EASLKRLDVDYIDLYYQHRVDTSVSIEDTMGELKKLVEEGKIKYIGLSEASADTIRRAHAVHPITAVQMEYSLWTRE-IE 195 (289)
Q Consensus 117 ~~sL~~L~~~~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~~~~~~~~~~q~~~~~~~~~-~~ 195 (289)
-.=|+.||+.+|.|+=+|...... .|.+.|+.-+||-+....-.++-.... .+. +..+- ..
T Consensus 206 i~yLk~LGvtaVeLLPV~~~~~~~----------~l~~~gl~n~WGYdP~~fFAp~~~Yss-------~p~-p~~~i~Ef 267 (697)
T COG1523 206 IDYLKDLGVTAVELLPVFDFYDEP----------HLDKSGLNNNWGYDPLNFFAPEGRYAS-------NPE-PATRIKEF 267 (697)
T ss_pred HHHHHHhCCceEEEecceEEeccc----------cccccccccccCCCcccccCCCccccC-------CCC-cchHHHHH
Confidence 467899999999999888765432 222888999999876542222111111 111 22222 22
Q ss_pred hhhHHHHHHhCCeEEE
Q 022968 196 DDIIPLCRELGIGIVA 211 (289)
Q Consensus 196 ~~~~~~~~~~gi~v~a 211 (289)
+.++..++++||+||-
T Consensus 268 K~mV~~lHkaGI~VIL 283 (697)
T COG1523 268 KDMVKALHKAGIEVIL 283 (697)
T ss_pred HHHHHHHHHcCCEEEE
Confidence 7899999999999983
No 246
>PF07476 MAAL_C: Methylaspartate ammonia-lyase C-terminus; InterPro: IPR022662 Methylaspartate ammonia-lyase 4.3.1.2 from EC catalyses the second step of fermentation of glutamate. It is a homodimer. This domain represents the C-terminal region of methylaspartate ammonia-lyase and contains a TIM barrel fold similar to the PF01188 from PFAM. This domain represents the catalytic domain and contains a metal binding site []. ; PDB: 1KKO_B 1KKR_A 3ZVI_A 1KD0_B 1KCZ_B 3ZVH_A.
Probab=26.82 E-value=2.2e+02 Score=24.32 Aligned_cols=102 Identities=17% Similarity=0.143 Sum_probs=55.7
Q ss_pred CCCHHHHHHHHHHHHHHcCCCcccEEeecCCCCCCCHHHHHHHHHHHHHcCccceeec----CCC--CHHHHHHHHccCC
Q 022968 106 KGSPEYVRKCCEASLKRLDVDYIDLYYQHRVDTSVSIEDTMGELKKLVEEGKIKYIGL----SEA--SADTIRRAHAVHP 179 (289)
Q Consensus 106 ~~~~~~i~~~~~~sL~~L~~~~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~iGv----s~~--~~~~l~~~~~~~~ 179 (289)
+.+.+.+-+-+.+.-+.-.. .+ +++..|-+....+++.++|.+|++.=+-+-+.| -.| +.+.++.+.+...
T Consensus 85 ~~d~~~~adYl~~l~~aA~P--~~-L~iEgP~d~g~r~~QI~~l~~Lr~~L~~~g~~v~iVADEWCNT~eDI~~F~da~A 161 (248)
T PF07476_consen 85 DNDPDRMADYLAELEEAAAP--FK-LRIEGPMDAGSREAQIEALAELREELDRRGINVEIVADEWCNTLEDIREFADAKA 161 (248)
T ss_dssp TT-HHHHHHHHHHHHHHHTT--S--EEEE-SB--SSHHHHHHHHHHHHHHHHHCT--EEEEE-TT--SHHHHHHHHHTT-
T ss_pred CCCHHHHHHHHHHHHHhcCC--Ce-eeeeCCcCCCChHHHHHHHHHHHHHHHhcCCCCeEEeehhcCCHHHHHHHHhcCC
Confidence 34666666666554444432 33 346777665666777777777666433333333 233 5788888888888
Q ss_pred ceEEeccCCCCCcc-hhhhhHHHHHHhCCeEE
Q 022968 180 ITAVQMEYSLWTRE-IEDDIIPLCRELGIGIV 210 (289)
Q Consensus 180 ~~~~q~~~~~~~~~-~~~~~~~~~~~~gi~v~ 210 (289)
.+.+|+.---+-.- -.-+-+-+|+++|++..
T Consensus 162 ~dmVQIKtPDLGgi~ntieAvlyCk~~gvgaY 193 (248)
T PF07476_consen 162 ADMVQIKTPDLGGINNTIEAVLYCKEHGVGAY 193 (248)
T ss_dssp SSEEEE-GGGGSSTHHHHHHHHHHHHTT-EEE
T ss_pred cCEEEecCCCccchhhHHHHHHHHHhcCCcee
Confidence 88999863222110 01356779999999965
No 247
>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain. 4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate
Probab=26.77 E-value=4.1e+02 Score=22.83 Aligned_cols=24 Identities=17% Similarity=0.230 Sum_probs=21.5
Q ss_pred CCHHHHHHHHHHHHHcCCCeEeCC
Q 022968 39 LSHEVGCSIIKETFNRGITLFDTS 62 (289)
Q Consensus 39 ~~~~~~~~~l~~A~~~Gi~~~DtA 62 (289)
.+.++..++++.-.+.||..++..
T Consensus 19 ~~~~~k~~i~~~L~~~Gv~~iEvg 42 (263)
T cd07943 19 FTLEQVRAIARALDAAGVPLIEVG 42 (263)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEee
Confidence 478889999999999999999987
No 248
>KOG1549 consensus Cysteine desulfurase NFS1 [Amino acid transport and metabolism]
Probab=26.75 E-value=5.5e+02 Score=24.23 Aligned_cols=156 Identities=15% Similarity=0.181 Sum_probs=77.3
Q ss_pred HHHHHHHHHHHHcCCCeEeCCcCcCCC-----ChhHHHHHHHHhcCCCCCEEEEecccccccCCcccCCCCCHHHHHHHH
Q 022968 42 EVGCSIIKETFNRGITLFDTSDVYGVD-----HDNEIMVGKALKQLPRDKIQLATKFGCFMLDGVSIGVKGSPEYVRKCC 116 (289)
Q Consensus 42 ~~~~~~l~~A~~~Gi~~~DtA~~Yg~~-----g~se~~lg~~l~~~~R~~~~I~tK~~~~~~~~~~~~~~~~~~~i~~~~ 116 (289)
....+.+...+..+..-=|.= .|+.. -.+...+.+.|...+++ .|.|--.. -+-.-+.+++
T Consensus 57 ~~Vldam~~~~~~~~~nPh~~-~y~w~~~~~~E~aR~~VAklInAd~~d--IiFts~AT-----------Es~Nlvl~~v 122 (428)
T KOG1549|consen 57 PRVLDAMLPYLLEYLGNPHSR-SYGWKAEDAVEAAREQVAKLINADPSD--IVFTSGAT-----------ESNNLVLKGV 122 (428)
T ss_pred HHHHHHHHHHHHHhhcCCCcc-ccchhhhHHHHHHHHHHHHHhCCCCCc--EEEeCCch-----------HHHHHHHHHh
Confidence 345666666666655544433 56530 01334566666654555 44443110 0112222333
Q ss_pred HHHHHHcCCCcccEEeecCCCCCCCHHHHHHHHHHHHHcCc-cceeecCCCC---HHHHHHHHcc-CCceEE-eccCCCC
Q 022968 117 EASLKRLDVDYIDLYYQHRVDTSVSIEDTMGELKKLVEEGK-IKYIGLSEAS---ADTIRRAHAV-HPITAV-QMEYSLW 190 (289)
Q Consensus 117 ~~sL~~L~~~~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~-ir~iGvs~~~---~~~l~~~~~~-~~~~~~-q~~~~~~ 190 (289)
-..... +++. -++++|.-- .......+.|+++|. ++++.|.+-. .+.++++++. .....+ -+...+.
T Consensus 123 ~~~~~~-~~~k-~iitl~~eH-----~~v~~s~~~l~~~g~~Vt~lpv~~~~~~d~~~~~~~i~~~T~lv~I~~Vnn~~g 195 (428)
T KOG1549|consen 123 ARFFGD-KTKK-HIITLQTEH-----PCVLDSCRALQEEGLEVTYLPVEDSGLVDISKLREAIRSKTRLVSIMHVNNEIG 195 (428)
T ss_pred hccccc-cccc-eEEEecccC-----cchhHHHHHHHhcCeEEEEeccCccccccHHHHHHhcCCCceEEEEEecccCcc
Confidence 322222 3332 355555322 134566777778886 7788887533 4555555554 121111 2222222
Q ss_pred CcchhhhhHHHHHHhCCeEEEcccCccc
Q 022968 191 TREIEDDIIPLCRELGIGIVAYSPLGRG 218 (289)
Q Consensus 191 ~~~~~~~~~~~~~~~gi~v~a~~pl~~G 218 (289)
-..+-+++...|++.||.+.+=...+-|
T Consensus 196 v~~Pv~EI~~icr~~~v~v~~DaAQavG 223 (428)
T KOG1549|consen 196 VLQPVKEIVKICREEGVQVHVDAAQAVG 223 (428)
T ss_pred ccccHHHHHHHhCcCCcEEEeehhhhcC
Confidence 2223378888999998877765555544
No 249
>TIGR00677 fadh2_euk methylenetetrahydrofolate reductase, eukaryotic type. This protein is an FAD-containing flavoprotein.
Probab=26.71 E-value=4.4e+02 Score=23.14 Aligned_cols=158 Identities=12% Similarity=0.155 Sum_probs=83.1
Q ss_pred HHHHHHHHHHHHHcCCCeEeCCcCcCCCChhHHHH--HHHHhcCCCCCEEEEecccccccCCcccCCCCCHHHHHHHHHH
Q 022968 41 HEVGCSIIKETFNRGITLFDTSDVYGVDHDNEIMV--GKALKQLPRDKIQLATKFGCFMLDGVSIGVKGSPEYVRKCCEA 118 (289)
Q Consensus 41 ~~~~~~~l~~A~~~Gi~~~DtA~~Yg~~g~se~~l--g~~l~~~~R~~~~I~tK~~~~~~~~~~~~~~~~~~~i~~~~~~ 118 (289)
.+...+.++.-.+.+..|+..+..-|. ...+..+ ...|++ +-.+-++..+... +.+...+...+..
T Consensus 15 ~~~~~~~~~~l~~~~p~fvsvT~~~~~-~~~~~t~~~~~~l~~--~~g~~~i~Hltcr---------~~~~~~l~~~L~~ 82 (281)
T TIGR00677 15 VQNLYERMDRMVASGPLFIDITWGAGG-TTAELTLTIASRAQN--VVGVETCMHLTCT---------NMPIEMIDDALER 82 (281)
T ss_pred HHHHHHHHHHHhhCCCCEEEeccCCCC-cchhhHHHHHHHHHH--hcCCCeeEEeccC---------CCCHHHHHHHHHH
Confidence 345566666667888999987765431 2233333 333442 1122222222211 2455566666544
Q ss_pred HHHHcCCCcccEEeecCCC---------CCCCHHHHHHHHHHHHHc-CccceeecCCCC--------HH-HHHHHHc---
Q 022968 119 SLKRLDVDYIDLYYQHRVD---------TSVSIEDTMGELKKLVEE-GKIKYIGLSEAS--------AD-TIRRAHA--- 176 (289)
Q Consensus 119 sL~~L~~~~iDl~~lh~~~---------~~~~~~~~~~~l~~l~~~-G~ir~iGvs~~~--------~~-~l~~~~~--- 176 (289)
. ..+|++ +++.|-... ....+..+.+.++.+++. |.--.||+..++ .+ .+..+.+
T Consensus 83 ~-~~~Gi~--niLal~GD~p~~~~~~~~~~~~f~~a~~Li~~i~~~~~~~f~igva~~Pe~Hp~~~~~~~d~~~L~~Ki~ 159 (281)
T TIGR00677 83 A-YSNGIQ--NILALRGDPPHIGDDWTEVEGGFQYAVDLVKYIRSKYGDYFCIGVAGYPEGHPEAESVELDLKYLKEKVD 159 (281)
T ss_pred H-HHCCCC--EEEEECCCCCCCCCCCCCCCCCCcCHHHHHHHHHHhCCCceEEEEEECCCCCCCCCCHHHHHHHHHHHHH
Confidence 4 678865 344443211 112233456666666664 444678987663 11 1233222
Q ss_pred c-CCceEEeccCCCCCcchhhhhHHHHHHhCCeEEEcccCccccC
Q 022968 177 V-HPITAVQMEYSLWTREIEDDIIPLCRELGIGIVAYSPLGRGFF 220 (289)
Q Consensus 177 ~-~~~~~~q~~~~~~~~~~~~~~~~~~~~~gi~v~a~~pl~~G~L 220 (289)
. ..+.+-|.-|+.- .-.++++.|++.|+.+ |+--|++
T Consensus 160 aGA~f~iTQ~~Fd~~---~~~~f~~~~~~~gi~~----PIi~GI~ 197 (281)
T TIGR00677 160 AGADFIITQLFYDVD---NFLKFVNDCRAIGIDC----PIVPGIM 197 (281)
T ss_pred cCCCEeeccceecHH---HHHHHHHHHHHcCCCC----CEEeecc
Confidence 1 4566778877752 2257888899997754 5555654
No 250
>TIGR00789 flhB_rel flhB C-terminus-related protein. This model describes a short protein (80-93 residues) homologous to the C-terminus of the flagellar biosynthetic protein FlhB. It is found so far only in species that also have FlhB. In a phylogenetic tree based on alignment of both this family and the homologous region of FlhB and its homologs, the members of this family form a monophyletic set.
Probab=26.49 E-value=1e+02 Score=21.73 Aligned_cols=25 Identities=28% Similarity=0.396 Sum_probs=22.6
Q ss_pred hhhHHHHHHhCCeEEEcccCccccC
Q 022968 196 DDIIPLCRELGIGIVAYSPLGRGFF 220 (289)
Q Consensus 196 ~~~~~~~~~~gi~v~a~~pl~~G~L 220 (289)
..+++.++++||.++-..+|+.-+.
T Consensus 30 ~~I~~~A~e~~VPi~~~~~LAr~L~ 54 (82)
T TIGR00789 30 ERIIEIAKKHGIPIVEDPDLVDVLL 54 (82)
T ss_pred HHHHHHHHHcCCCEEeCHHHHHHHH
Confidence 6799999999999999999998764
No 251
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=26.41 E-value=2.2e+02 Score=26.50 Aligned_cols=74 Identities=11% Similarity=0.030 Sum_probs=57.8
Q ss_pred HHHHHHHHHHcCccceeecCCCCHHHHHHHHccCCceEEeccCCCCCcchhhhhHHHHHHhCCeEEEcccCccc
Q 022968 145 TMGELKKLVEEGKIKYIGLSEASADTIRRAHAVHPITAVQMEYSLWTREIEDDIIPLCRELGIGIVAYSPLGRG 218 (289)
Q Consensus 145 ~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~gi~v~a~~pl~~G 218 (289)
.-+.+..|.+.|.--..||.+-.-...+.+....-..+.+-+|+++......+..+..++.++.|.+--|++.+
T Consensus 279 ~~~~~~~L~~~g~~v~~g~l~~~d~d~~~a~~l~~~~~~~~pf~~i~~~~~~~a~~~~~~~~~vi~~~~~~g~~ 352 (402)
T PRK09536 279 AARAVSRLVAAGASVSVGPVPEGDTAAETAARVGCEAVTVPPFKPIEDSTRAEATDLIIAADAVVAAGVAAAAR 352 (402)
T ss_pred HHHHHHHHHHCCCeEEEecCcCcchhHHHHHHcCCCEEeeCCCCCCCHHHHHHHHHHHHhCCEEEECCCccCCC
Confidence 45788899999999999998876555555544455566788999998765577888889999999988888754
No 252
>COG0135 TrpF Phosphoribosylanthranilate isomerase [Amino acid transport and metabolism]
Probab=26.35 E-value=89 Score=26.28 Aligned_cols=98 Identities=21% Similarity=0.198 Sum_probs=51.4
Q ss_pred CHHHHHHHHHHHHHc-CCCeEeCCcCcCCCChhHHHHHHHHhcCCCCCEEEEecccccccCCcccCCCCCHHHHHHHHHH
Q 022968 40 SHEVGCSIIKETFNR-GITLFDTSDVYGVDHDNEIMVGKALKQLPRDKIQLATKFGCFMLDGVSIGVKGSPEYVRKCCEA 118 (289)
Q Consensus 40 ~~~~~~~~l~~A~~~-Gi~~~DtA~~Yg~~g~se~~lg~~l~~~~R~~~~I~tK~~~~~~~~~~~~~~~~~~~i~~~~~~ 118 (289)
..+++..+.+...+. |+-|...++=|= +-+...+..+..+. .++++-+. +.+.+.+ .+
T Consensus 11 ~~eda~~a~~~gad~iG~If~~~SpR~V----s~~~a~~i~~~v~~-----~~~VgVf~--------n~~~~~i----~~ 69 (208)
T COG0135 11 RLEDAKAAAKAGADYIGFIFVPKSPRYV----SPEQAREIASAVPK-----VKVVGVFV--------NESIEEI----LE 69 (208)
T ss_pred CHHHHHHHHHcCCCEEEEEEcCCCCCcC----CHHHHHHHHHhCCC-----CCEEEEEC--------CCCHHHH----HH
Confidence 445555555443333 444445566554 34445555554332 12333322 2233333 44
Q ss_pred HHHHcCCCcccEEeecCCCCCCCHHHHHHHHHHHHHc---CccceeecCCCCH
Q 022968 119 SLKRLDVDYIDLYYQHRVDTSVSIEDTMGELKKLVEE---GKIKYIGLSEASA 168 (289)
Q Consensus 119 sL~~L~~~~iDl~~lh~~~~~~~~~~~~~~l~~l~~~---G~ir~iGvs~~~~ 168 (289)
.++.+ .+|++|||...+ .+.++.|++. .-++.+.++.-..
T Consensus 70 i~~~~---~ld~VQlHG~e~-------~~~~~~l~~~~~~~v~kai~v~~~~~ 112 (208)
T COG0135 70 IAEEL---GLDAVQLHGDED-------PEYIDQLKEELGVPVIKAISVSEEGD 112 (208)
T ss_pred HHHhc---CCCEEEECCCCC-------HHHHHHHHhhcCCceEEEEEeCCccc
Confidence 44455 489999998754 3344455554 5789999986533
No 253
>PRK14041 oxaloacetate decarboxylase; Provisional
Probab=25.99 E-value=3.3e+02 Score=26.02 Aligned_cols=98 Identities=11% Similarity=0.156 Sum_probs=52.4
Q ss_pred CCHHHHHHHHHHHHHHcCCCcccEEeecCCCCCC------CHHHHHHHHHHHHHcC-ccce---------eecCCCCHHH
Q 022968 107 GSPEYVRKCCEASLKRLDVDYIDLYYQHRVDTSV------SIEDTMGELKKLVEEG-KIKY---------IGLSEASADT 170 (289)
Q Consensus 107 ~~~~~i~~~~~~sL~~L~~~~iDl~~lh~~~~~~------~~~~~~~~l~~l~~~G-~ir~---------iGvs~~~~~~ 170 (289)
.+.+... .+-+.|.++|++.|++. ..... ..++.|+.++.+++.. .++. +|..++..+.
T Consensus 22 ~~t~dkl-~Ia~~Ld~~Gv~~IE~~----ggatfd~~~~Fl~e~p~e~l~~l~~~~~~~~l~~l~r~~N~~G~~~~~dDv 96 (467)
T PRK14041 22 MRTEDML-PALEAFDRMGFYSMEVW----GGATFDVCVRFLNENPWERLKEIRKRLKNTKIQMLLRGQNLVGYRHYADDV 96 (467)
T ss_pred CCHHHHH-HHHHHHHHcCCCEEEec----CCccchhhhcccCCCHHHHHHHHHHhCCCCEEEEEeccccccCcccccchh
Confidence 3444443 34466888899999982 11100 1123577777777652 2333 2333333333
Q ss_pred H----HHHHccCCceEEeccCCCCCcchhhhhHHHHHHhCCeEE
Q 022968 171 I----RRAHAVHPITAVQMEYSLWTREIEDDIIPLCRELGIGIV 210 (289)
Q Consensus 171 l----~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~gi~v~ 210 (289)
+ +.+.+ ..++++.+...+.+...-...+++++++|..+.
T Consensus 97 v~~fv~~A~~-~Gvd~irif~~lnd~~n~~~~i~~ak~~G~~v~ 139 (467)
T PRK14041 97 VELFVKKVAE-YGLDIIRIFDALNDIRNLEKSIEVAKKHGAHVQ 139 (467)
T ss_pred hHHHHHHHHH-CCcCEEEEEEeCCHHHHHHHHHHHHHHCCCEEE
Confidence 3 33333 345666655444433322567888899988765
No 254
>TIGR03471 HpnJ hopanoid biosynthesis associated radical SAM protein HpnJ. One of the well-described hopanoid intermediates is bacteriohopanetetrol. In the conversion from hopene several reactions must occur in the side chain for which a radical mechanism might be reasonable. These include the four (presumably anaerobic) hydroxylations and a methyl shift.
Probab=25.93 E-value=5.7e+02 Score=24.16 Aligned_cols=150 Identities=13% Similarity=0.073 Sum_probs=75.4
Q ss_pred CCHHHHHHHHHHHHHc--CCCeEe-CCcCcCCCChhHHHHHHHHhcCCCCCEEEEecccccccCCcccCCCCCHHHHHHH
Q 022968 39 LSHEVGCSIIKETFNR--GITLFD-TSDVYGVDHDNEIMVGKALKQLPRDKIQLATKFGCFMLDGVSIGVKGSPEYVRKC 115 (289)
Q Consensus 39 ~~~~~~~~~l~~A~~~--Gi~~~D-tA~~Yg~~g~se~~lg~~l~~~~R~~~~I~tK~~~~~~~~~~~~~~~~~~~i~~~ 115 (289)
.+.++..+-++...+. |++.|- ..+.+.. +...+-+.++...+.++.+.. .. ..+.++ .
T Consensus 227 rs~e~V~~Ei~~~~~~~~~~~~i~f~Dd~f~~---~~~~~~~l~~~l~~~~i~~~~----~~------~~~~~~-----e 288 (472)
T TIGR03471 227 RSAESVIEEVKYALENFPEVREFFFDDDTFTD---DKPRAEEIARKLGPLGVTWSC----NA------RANVDY-----E 288 (472)
T ss_pred CCHHHHHHHHHHHHHhcCCCcEEEEeCCCCCC---CHHHHHHHHHHHhhcCceEEE----Ee------cCCCCH-----H
Confidence 3677788888887775 777542 2233332 222233333221111221111 00 001233 3
Q ss_pred HHHHHHHcCCCcccEEe-------ecCCCCCCCHHHHHHHHHHHHHcCccce----eecCCCCHHHHHHHHcc---CCce
Q 022968 116 CEASLKRLDVDYIDLYY-------QHRVDTSVSIEDTMGELKKLVEEGKIKY----IGLSEASADTIRRAHAV---HPIT 181 (289)
Q Consensus 116 ~~~sL~~L~~~~iDl~~-------lh~~~~~~~~~~~~~~l~~l~~~G~ir~----iGvs~~~~~~l~~~~~~---~~~~ 181 (289)
+-+.|++.|+.++-+=+ |+...-....++..++++.+++.|.--. +|+-+.+.+.+.+.++. ..++
T Consensus 289 ~l~~l~~aG~~~v~iGiES~s~~~L~~~~K~~~~~~~~~~i~~~~~~Gi~v~~~~IiGlPget~e~~~~ti~~~~~l~~~ 368 (472)
T TIGR03471 289 TLKVMKENGLRLLLVGYESGDQQILKNIKKGLTVEIARRFTRDCHKLGIKVHGTFILGLPGETRETIRKTIDFAKELNPH 368 (472)
T ss_pred HHHHHHHcCCCEEEEcCCCCCHHHHHHhcCCCCHHHHHHHHHHHHHCCCeEEEEEEEeCCCCCHHHHHHHHHHHHhcCCC
Confidence 33556666765543221 1111122345677888889999886433 26666777766655443 3334
Q ss_pred EEeccCCCCCcchhhhhHHHHHHhCCe
Q 022968 182 AVQMEYSLWTREIEDDIIPLCRELGIG 208 (289)
Q Consensus 182 ~~q~~~~~~~~~~~~~~~~~~~~~gi~ 208 (289)
.++ ++++..-+...+.+.++++|+-
T Consensus 369 ~~~--~~~l~P~PGT~l~~~~~~~g~~ 393 (472)
T TIGR03471 369 TIQ--VSLAAPYPGTELYDQAKQNGWI 393 (472)
T ss_pred cee--eeecccCCCcHHHHHHHHCCCc
Confidence 333 3444444446788888887763
No 255
>cd03313 enolase Enolase: Enolases are homodimeric enzymes that catalyse the reversible dehydration of 2-phospho-D-glycerate to phosphoenolpyruvate as part of the glycolytic and gluconeogenesis pathways. The reaction is facilitated by the presence of metal ions.
Probab=25.90 E-value=5.4e+02 Score=23.94 Aligned_cols=96 Identities=14% Similarity=0.128 Sum_probs=62.0
Q ss_pred CCHHHHHHHHHHHHHHcCCCcccEEeecCCCCCCCHHHHHHHHHHHHHcC--ccceeecC--CCCHHHHHHHHccCCceE
Q 022968 107 GSPEYVRKCCEASLKRLDVDYIDLYYQHRVDTSVSIEDTMGELKKLVEEG--KIKYIGLS--EASADTIRRAHAVHPITA 182 (289)
Q Consensus 107 ~~~~~i~~~~~~sL~~L~~~~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G--~ir~iGvs--~~~~~~l~~~~~~~~~~~ 182 (289)
++++...+-+.+.++. .+++++-.|-+..+ |+.+.+|.+.- .+.-.|=- .+++..+.++++....++
T Consensus 261 ~t~~eai~~~~~l~e~-----~~i~~iEdPl~~~D----~eg~~~L~~~~g~~ipi~gdE~~~~~~~~~~~~i~~~a~d~ 331 (408)
T cd03313 261 LTSEELIDYYKELVKK-----YPIVSIEDPFDEDD----WEGWAKLTAKLGDKIQIVGDDLFVTNPERLKKGIEKKAANA 331 (408)
T ss_pred cCHHHHHHHHHHHHHh-----CCcEEEEeCCCCcC----HHHHHHHHHhcCCCCeEEcCCcccCCHHHHHHHHHhCCCCE
Confidence 4555555555554444 35667777654333 56666666663 44332222 246899999998888899
Q ss_pred EeccCCCCCcc-hhhhhHHHHHHhCCeEEE
Q 022968 183 VQMEYSLWTRE-IEDDIIPLCRELGIGIVA 211 (289)
Q Consensus 183 ~q~~~~~~~~~-~~~~~~~~~~~~gi~v~a 211 (289)
+|+..+-.-.- ...++...|+++|+.++.
T Consensus 332 v~ik~~~iGGite~~~ia~lA~~~G~~~~~ 361 (408)
T cd03313 332 LLIKVNQIGTLTETIEAIKLAKKNGYGVVV 361 (408)
T ss_pred EEEcccccCCHHHHHHHHHHHHHcCCeEEc
Confidence 99987765432 226788999999999864
No 256
>TIGR03849 arch_ComA phosphosulfolactate synthase. This model finds the ComA (Coenzyme M biosynthesis A) protein, phosphosulfolactate synthase, in methanogenic archaea. The ComABC pathway is one of at least two pathways to the intermediate sulfopyruvate. Coenzyme M occurs rarely and sporadically outside of the archaea, as for expoxide metabolism in Xanthobacter autotrophicus Py2, but candidate phosphosulfolactate synthases from that and other species occur fall below the cutoff and outside the scope of this model. This model deliberately is narrower in scope than pfam02679.
Probab=25.83 E-value=2.9e+02 Score=23.74 Aligned_cols=95 Identities=19% Similarity=0.163 Sum_probs=55.5
Q ss_pred HHHHHHHHHcCCCcccEEeecCCCCCCCHHHHHHHHHH-HHHcCccceeecCCC--------CHHHHHHHHccCCceEEe
Q 022968 114 KCCEASLKRLDVDYIDLYYQHRVDTSVSIEDTMGELKK-LVEEGKIKYIGLSEA--------SADTIRRAHAVHPITAVQ 184 (289)
Q Consensus 114 ~~~~~sL~~L~~~~iDl~~lh~~~~~~~~~~~~~~l~~-l~~~G~ir~iGvs~~--------~~~~l~~~~~~~~~~~~q 184 (289)
+.++..|+-.| +|||.+=+-|-......++.++..-+ +++-|---+.| .++ ..++..+.++.-.|+++.
T Consensus 12 ~~~~d~Le~~g-~yID~lKfg~Gt~~l~~~~~l~eki~la~~~~V~v~~G-Gtl~E~~~~q~~~~~Yl~~~k~lGf~~IE 89 (237)
T TIGR03849 12 KFVEDYLKVCG-DYITFVKFGWGTSALIDRDIVKEKIEMYKDYGIKVYPG-GTLFEIAHSKGKFDEYLNECDELGFEAVE 89 (237)
T ss_pred HHHHHHHHHhh-hheeeEEecCceEeeccHHHHHHHHHHHHHcCCeEeCC-ccHHHHHHHhhhHHHHHHHHHHcCCCEEE
Confidence 46677788888 79999999887655444444444444 44455555555 211 112222233345677777
Q ss_pred ccCCCCCcchh--hhhHHHHHHhCCeEE
Q 022968 185 MEYSLWTREIE--DDIIPLCRELGIGIV 210 (289)
Q Consensus 185 ~~~~~~~~~~~--~~~~~~~~~~gi~v~ 210 (289)
+.=..+.-..+ ..+++.++++|..+.
T Consensus 90 iS~G~~~i~~~~~~rlI~~~~~~g~~v~ 117 (237)
T TIGR03849 90 ISDGSMEISLEERCNLIERAKDNGFMVL 117 (237)
T ss_pred EcCCccCCCHHHHHHHHHHHHhCCCeEe
Confidence 76554443322 467888888887765
No 257
>COG0646 MetH Methionine synthase I (cobalamin-dependent), methyltransferase domain [Amino acid transport and metabolism]
Probab=25.76 E-value=4.9e+02 Score=23.31 Aligned_cols=173 Identities=12% Similarity=0.058 Sum_probs=93.7
Q ss_pred HHHHHHHHH-HHHcCCCeEeCCcCcCCC------ChhHH----H------HHHHHhc--CCCCCEEEEecccccccCCcc
Q 022968 42 EVGCSIIKE-TFNRGITLFDTSDVYGVD------HDNEI----M------VGKALKQ--LPRDKIQLATKFGCFMLDGVS 102 (289)
Q Consensus 42 ~~~~~~l~~-A~~~Gi~~~DtA~~Yg~~------g~se~----~------lg~~l~~--~~R~~~~I~tK~~~~~~~~~~ 102 (289)
.+...-+++ .+++|-..+.|- .||.. ..-|. + |.+...+ ..+.+.||..-+|+...-...
T Consensus 52 Pd~I~~IH~aY~eAGADiIeTN-TFgat~i~lady~led~v~~in~~aa~iAR~aA~~~~~~k~rfVaGsiGPt~k~~~~ 130 (311)
T COG0646 52 PDVIEAIHRAYIEAGADIIETN-TFGATTIKLADYGLEDKVYEINQKAARIARRAADEAGDPKPRFVAGSIGPTNKTLSI 130 (311)
T ss_pred cHHHHHHHHHHHhccCcEEEec-CCCcchhhHhhhChHHHHHHHHHHHHHHHHHHHhhcCCCCceEEEEeccCcCCcCCc
Confidence 344444555 569999999986 44420 00111 1 1221111 112578888888876541111
Q ss_pred cC-CCCCHHHHHHHHHHHHHHcCCCcccEEeecCCCCCCCHHHHHHHHHHHHHcCccce----------eec--CCCCHH
Q 022968 103 IG-VKGSPEYVRKCCEASLKRLDVDYIDLYYQHRVDTSVSIEDTMGELKKLVEEGKIKY----------IGL--SEASAD 169 (289)
Q Consensus 103 ~~-~~~~~~~i~~~~~~sL~~L~~~~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~----------iGv--s~~~~~ 169 (289)
.. +..+.+.++++..+..+-|=-.-+|++++.-..+......++.+.++..++..++- -|. +.-+++
T Consensus 131 ~~~~~v~fd~l~~ay~eq~~~Li~gG~D~iLiET~~D~l~~KaA~~a~~~~~~~~~~~LPv~~s~Ti~~sG~tl~Gq~~~ 210 (311)
T COG0646 131 SPDFAVTFDELVEAYREQVEGLIDGGADLILIETIFDTLNAKAAVFAAREVFEELGVRLPVMISGTITDSGRTLSGQTIE 210 (311)
T ss_pred CCcccccHHHHHHHHHHHHHHHHhCCCcEEEEehhccHHHHHHHHHHHHHHHHhcCCcccEEEEEEEecCceecCCCcHH
Confidence 11 25788999999999998887788999999866554445566666666666433321 121 222334
Q ss_pred HHHHHHccCCceEEeccCCCCCcchhhhhHHHHHHhCCeEEEcccCc
Q 022968 170 TIRRAHAVHPITAVQMEYSLWTREIEDDIIPLCRELGIGIVAYSPLG 216 (289)
Q Consensus 170 ~l~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~gi~v~a~~pl~ 216 (289)
.+...++...++.+=+.+.+--... ...++....+-=.+++--|-+
T Consensus 211 a~~~~l~~~~~~~vGlNCa~Gp~~m-~~~l~~ls~~~~~~vs~~PNA 256 (311)
T COG0646 211 AFLNSLEHLGPDAVGLNCALGPDEM-RPHLRELSRIADAFVSVYPNA 256 (311)
T ss_pred HHHHHhhccCCcEEeeccccCHHHH-HHHHHHHHhccCceEEEeCCC
Confidence 4434444444555555444322111 334444444444455555665
No 258
>PRK06298 type III secretion system protein; Validated
Probab=25.73 E-value=71 Score=29.27 Aligned_cols=25 Identities=24% Similarity=0.457 Sum_probs=22.9
Q ss_pred hhhHHHHHHhCCeEEEcccCccccC
Q 022968 196 DDIIPLCRELGIGIVAYSPLGRGFF 220 (289)
Q Consensus 196 ~~~~~~~~~~gi~v~a~~pl~~G~L 220 (289)
..+.+.|++|||+++..-||++.+.
T Consensus 293 ~~Ir~iA~e~~VPiven~pLARaLy 317 (356)
T PRK06298 293 KRIIAEAEKYGVPIMRNVPLAHQLL 317 (356)
T ss_pred HHHHHHHHHcCCCEEeCHHHHHHHH
Confidence 6799999999999999999998874
No 259
>cd03320 OSBS o-Succinylbenzoate synthase (OSBS) catalyzes the conversion of 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate (SHCHC) to 4-(2'-carboxyphenyl)-4-oxobutyrate (o-succinylbenzoate or OSB), a reaction in the menaquinone biosynthetic pathway. Menaquinone is an essential cofactor for anaerobic growth in eubacteria and some archaea. OSBS belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=25.70 E-value=4.3e+02 Score=22.67 Aligned_cols=86 Identities=20% Similarity=0.144 Sum_probs=55.2
Q ss_pred ccEEeecCCCCCCCHHHHHHHHHHHHHcCccceeecCCCCHHHHHHHHccCCceEEeccCCCCCc-chhhhhHHHHHHhC
Q 022968 128 IDLYYQHRVDTSVSIEDTMGELKKLVEEGKIKYIGLSEASADTIRRAHAVHPITAVQMEYSLWTR-EIEDDIIPLCRELG 206 (289)
Q Consensus 128 iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~~~~~~~~~~q~~~~~~~~-~~~~~~~~~~~~~g 206 (289)
.++.++..|-+ .+.++.+.++. .+.=-..|=|-++...+..+++...++++|+.....-. ..-..+.+.|+.+|
T Consensus 153 ~~i~~iEqP~~----~~d~~~~~~l~-~~~PIa~dEs~~~~~~~~~~~~~~~~d~v~~k~~~~GGit~~~~i~~~a~~~g 227 (263)
T cd03320 153 GRIEYIEQPLP----PDDLAELRRLA-AGVPIALDESLRRLDDPLALAAAGALGALVLKPALLGGPRALLELAEEARARG 227 (263)
T ss_pred cCCceEECCCC----hHHHHHHHHhh-cCCCeeeCCccccccCHHHHHhcCCCCEEEECchhcCCHHHHHHHHHHHHHcC
Confidence 45555555533 23456666665 33333455566677778888887888999998765432 12267899999999
Q ss_pred CeEEEcccCccc
Q 022968 207 IGIVAYSPLGRG 218 (289)
Q Consensus 207 i~v~a~~pl~~G 218 (289)
+.++..+-+..+
T Consensus 228 i~~~~~~~~es~ 239 (263)
T cd03320 228 IPAVVSSALESS 239 (263)
T ss_pred CCEEEEcchhhH
Confidence 999876444433
No 260
>cd01822 Lysophospholipase_L1_like Lysophospholipase L1-like subgroup of SGNH-hydrolases. The best characterized member in this family is TesA, an E. coli periplasmic protein with thioesterase, esterase, arylesterase, protease and lysophospholipase activity.
Probab=25.45 E-value=3.2e+02 Score=21.16 Aligned_cols=51 Identities=12% Similarity=0.145 Sum_probs=29.8
Q ss_pred hhhHHHHHHhCCeEEEcccCccccCCCCCCCCCCCcchhhhcCCCCCccchHHHHHHHHHHHHHHHHhCCCHHHH
Q 022968 196 DDIIPLCRELGIGIVAYSPLGRGFFAGKAVVESLPSESILAMHPRFSGENLEKNKLLYTRLETLAAKYGCTTPQL 270 (289)
Q Consensus 196 ~~~~~~~~~~gi~v~a~~pl~~G~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ia~~~g~s~~q~ 270 (289)
.++++.+++++..++-.++.....+ . .......-+.++++|+++++.....
T Consensus 91 ~~li~~~~~~~~~vil~~~~~~~~~---------~---------------~~~~~~~~~~~~~~a~~~~~~~~d~ 141 (177)
T cd01822 91 RQMIETAQARGAPVLLVGMQAPPNY---------G---------------PRYTRRFAAIYPELAEEYGVPLVPF 141 (177)
T ss_pred HHHHHHHHHCCCeEEEEecCCCCcc---------c---------------hHHHHHHHHHHHHHHHHcCCcEech
Confidence 5688888888888776554211000 0 0112334567888899988764443
No 261
>COG4464 CapC Capsular polysaccharide biosynthesis protein [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=25.44 E-value=3.2e+02 Score=23.34 Aligned_cols=29 Identities=17% Similarity=0.165 Sum_probs=23.1
Q ss_pred CCHHHHHHHHHHHHHcCCCeEeCCcCcCC
Q 022968 39 LSHEVGCSIIKETFNRGITLFDTSDVYGV 67 (289)
Q Consensus 39 ~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~ 67 (289)
-+.++..++++.|.+.|++-+=..++|-.
T Consensus 17 ~s~eesl~ml~~A~~qGvt~iVaTsHh~~ 45 (254)
T COG4464 17 KSLEESLAMLREAVRQGVTKIVATSHHLH 45 (254)
T ss_pred CcHHHHHHHHHHHHHcCceEEeecccccC
Confidence 37899999999999999998655555543
No 262
>cd08590 PI-PLCc_Rv2075c_like Catalytic domain of uncharacterized Mycobacterium tuberculosis Rv2075c-like proteins. This subfamily corresponds to the catalytic domain present in uncharacterized Mycobacterium tuberculosis Rv2075c and its homologs. Members in this family are more closely related to the Streptomyces antibioticus phosphatidylinositol-specific phospholipase C1(SaPLC1)-like proteins rather than the typical bacterial phosphatidylinositol-specific phospholipase C (PI-PLC, EC 4.6.1.13), which participate in Ca2+-independent PI metabolism, hydrolyzing the membrane lipid phosphatidylinositol (PI) to produce phosphorylated myo-inositol and diacylglycerol (DAG). In contrast, SaPLC1-like proteins have two Ca2+-chelating amino acid substitutions which convert them to metal-dependent bacterial PI-PLC. Rv2075c and its homologs have the same amino acid substitutions as well, which might suggest they have metal-dependent PI-PLC activity.
Probab=25.34 E-value=2.7e+02 Score=24.34 Aligned_cols=19 Identities=11% Similarity=0.204 Sum_probs=14.3
Q ss_pred HHHHHHHHcCCCeEeCCcC
Q 022968 46 SIIKETFNRGITLFDTSDV 64 (289)
Q Consensus 46 ~~l~~A~~~Gi~~~DtA~~ 64 (289)
--|..+++.|||+||---+
T Consensus 45 ~sI~~QL~~GvR~LdLdv~ 63 (267)
T cd08590 45 LSITDQLDLGARFLELDVH 63 (267)
T ss_pred cCHHHHHhhCCcEEEEeee
Confidence 3477889999999984433
No 263
>PF01904 DUF72: Protein of unknown function DUF72; InterPro: IPR002763 The function of this family is unknown. Aquifex aeolicus has two copies of this protein. A probable aspartyl-tRNA synthetase from Escherichia coli [] belongs to this group.; PDB: 1VPY_A 1ZTV_A 1VPQ_A.
Probab=25.20 E-value=4.2e+02 Score=22.37 Aligned_cols=128 Identities=13% Similarity=0.168 Sum_probs=69.4
Q ss_pred CCeEeC-CcCcCCCChhHHHHHHHHhcCCCCCEEEEecccccccCCcccCCCCCHHHHHHHHHHHHHHcCCCcccEEeec
Q 022968 56 ITLFDT-SDVYGVDHDNEIMVGKALKQLPRDKIQLATKFGCFMLDGVSIGVKGSPEYVRKCCEASLKRLDVDYIDLYYQH 134 (289)
Q Consensus 56 i~~~Dt-A~~Yg~~g~se~~lg~~l~~~~R~~~~I~tK~~~~~~~~~~~~~~~~~~~i~~~~~~sL~~L~~~~iDl~~lh 134 (289)
.|.++. +..|+ --+.+.+.+|.++ ..+++..+-|+...-.-.. ......+.+.+.+-+.++.|+ +++..+++.
T Consensus 19 F~~VEvn~TFY~--~P~~~t~~~W~~~-~p~~F~F~vK~~~~iTH~~--~l~~~~~~~~~~F~~~~~~L~-~klg~iL~Q 92 (230)
T PF01904_consen 19 FNTVEVNSTFYR--IPSPETVARWREQ-TPEGFRFSVKAPQLITHER--RLRDCAEELWRRFLEALEPLG-EKLGPILFQ 92 (230)
T ss_dssp -SEEEE-HHCCS--SS-HHHHHHHHCT-S-TT-EEEEE--CCCCCCC--HCGSSHHHHHHHHHHHCHHHH-T-EEEEEEE
T ss_pred CCeEEECcccCC--CCCHHHHHHHHhh-CCCCeEEEEeccHHheecc--cccccHHHHHHHHHHHHHHHh-hcceEEEEE
Confidence 555443 33676 3477889999886 5578999999864432100 011235666466666999999 899999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHcCccceeecCCCCHHHHHHHHccCCceEEeccCCCCCcchhhhhHHHHHHhCCeEEE
Q 022968 135 RVDTSVSIEDTMGELKKLVEEGKIKYIGLSEASADTIRRAHAVHPITAVQMEYSLWTREIEDDIIPLCRELGIGIVA 211 (289)
Q Consensus 135 ~~~~~~~~~~~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~gi~v~a 211 (289)
.|.....-.+.++.|..+.+.=. ......+.++-.-+. ..+++++++++|+..+.
T Consensus 93 ~Ppsf~~~~~~~~~l~~~l~~~~-------------------~~~~~avE~R~~sW~---~~~~~~~l~~~~~~~v~ 147 (230)
T PF01904_consen 93 FPPSFRFTPENLERLDAFLDRLP-------------------RGFRYAVEFRHPSWF---TEEVFELLREHGVALVI 147 (230)
T ss_dssp --TT--S-HHHHHHHHHHHHHTT--------------------TS-EEEE--BGGGG---CHHHHHHHHHTT-EEEE
T ss_pred cCCCcCCCHHHHHHHHHHHhhcc-------------------cccceEEecCCcchh---hHHHHHHHHHcCCEEEE
Confidence 98765455566666666655421 011223333221111 26799999999998664
No 264
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=24.88 E-value=2.3e+02 Score=20.48 Aligned_cols=62 Identities=13% Similarity=0.293 Sum_probs=35.9
Q ss_pred HHHHHHcCccceeecCCCCH---HHHHHHHccCCceEEeccCCCCCcchhhhhHHHHHHhCCeEEE
Q 022968 149 LKKLVEEGKIKYIGLSEASA---DTIRRAHAVHPITAVQMEYSLWTREIEDDIIPLCRELGIGIVA 211 (289)
Q Consensus 149 l~~l~~~G~ir~iGvs~~~~---~~l~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~gi~v~a 211 (289)
++++.+...+..+-+++-+. +.+..+++.....++.=|...-. ....++++.|+++|+.++.
T Consensus 54 ~~~ll~~~~~D~V~I~tp~~~h~~~~~~~l~~g~~v~~EKP~~~~~-~~~~~l~~~a~~~~~~~~V 118 (120)
T PF01408_consen 54 LEELLADEDVDAVIIATPPSSHAEIAKKALEAGKHVLVEKPLALTL-EEAEELVEAAKEKGVKVMV 118 (120)
T ss_dssp HHHHHHHTTESEEEEESSGGGHHHHHHHHHHTTSEEEEESSSSSSH-HHHHHHHHHHHHHTSCEEE
T ss_pred HHHHHHhhcCCEEEEecCCcchHHHHHHHHHcCCEEEEEcCCcCCH-HHHHHHHHHHHHhCCEEEE
Confidence 34444444555555555443 34555556555555555554422 2237899999999987653
No 265
>COG2040 MHT1 Homocysteine/selenocysteine methylase (S-methylmethionine-dependent) [Amino acid transport and metabolism]
Probab=24.83 E-value=5e+02 Score=23.12 Aligned_cols=168 Identities=13% Similarity=0.113 Sum_probs=90.9
Q ss_pred HHHHHHHHHHHHHcCCCeEeCCcCcCC--CChhHHH----HHHH----------Hhc-CCCCCEEEEecccccccCC---
Q 022968 41 HEVGCSIIKETFNRGITLFDTSDVYGV--DHDNEIM----VGKA----------LKQ-LPRDKIQLATKFGCFMLDG--- 100 (289)
Q Consensus 41 ~~~~~~~l~~A~~~Gi~~~DtA~~Yg~--~g~se~~----lg~~----------l~~-~~R~~~~I~tK~~~~~~~~--- 100 (289)
++-.++.-...+++|-+.++|+ .|.. .+-+|++ +.+. .++ .-.+...|+.-+|+....-
T Consensus 42 peiv~~vh~df~~aGa~ii~T~-TYqa~~~~~~e~~~~~~~~~l~~~sv~la~~ard~~g~~~~~iagsiGP~ga~~a~E 120 (300)
T COG2040 42 PEIVRNVHADFLRAGADIITTA-TYQATPEGFAERVSEDEAKQLIRRSVELARAARDAYGEENQNIAGSLGPYGAALADE 120 (300)
T ss_pred HHHHHHHHHHHHHhcCcEEeeh-hhhcCHHHHHHhcchhHHHHHHHHHHHHHHHHHHHhcccccccceeccchhhhcChh
Confidence 3445566666779999999988 5653 1223321 1111 111 2344555666666543321
Q ss_pred cccCCCCCHHHHHHHHHHHHHHcCCCcccEEeecCCCCCCCHHHHHHHHHHHHHcCccceeecCCCC---------HHHH
Q 022968 101 VSIGVKGSPEYVRKCCEASLKRLDVDYIDLYYQHRVDTSVSIEDTMGELKKLVEEGKIKYIGLSEAS---------ADTI 171 (289)
Q Consensus 101 ~~~~~~~~~~~i~~~~~~sL~~L~~~~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~iGvs~~~---------~~~l 171 (289)
-...+..+.+.+.+-.+.-++.|.-.-+|++.+.--..-...+.+.+.+++. +|=-+|+++-.+ ....
T Consensus 121 y~g~Y~~~~d~~~~fh~~rie~l~~ag~Dlla~ETip~i~Ea~Aiv~l~~~~---s~p~wISfT~~d~~~lr~Gt~l~ea 197 (300)
T COG2040 121 YRGDYGASQDALYKFHRPRIEALNEAGADLLACETLPNITEAEAIVQLVQEF---SKPAWISFTLNDDTRLRDGTPLSEA 197 (300)
T ss_pred hcCccCccHHHHHHHHHHHHHHHHhCCCcEEeecccCChHHHHHHHHHHHHh---CCceEEEEEeCCCCccCCCccHHHH
Confidence 1223344666555556666667776779999887554333334455666665 888888887542 1222
Q ss_pred HHHHcc-CCceEEeccCCCCCcchhhhhHHHH--HHhCCeEEEccc
Q 022968 172 RRAHAV-HPITAVQMEYSLWTREIEDDIIPLC--RELGIGIVAYSP 214 (289)
Q Consensus 172 ~~~~~~-~~~~~~q~~~~~~~~~~~~~~~~~~--~~~gi~v~a~~p 214 (289)
...++. ..+..+-+.+.- .+.-..+++.. ...++++++|--
T Consensus 198 a~~~~~~~~iaa~gvNC~~--p~~~~a~i~~l~~~~~~~piivYPN 241 (300)
T COG2040 198 AAILAGLPNIAALGVNCCH--PDHIPAAIEELSKLLTGKPIIVYPN 241 (300)
T ss_pred HHHHhcCcchhheeeccCC--hhhhHHHHHHHHhcCCCCceEEcCC
Confidence 222222 234443333333 22225566666 344788888755
No 266
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=24.78 E-value=2.7e+02 Score=20.10 Aligned_cols=44 Identities=18% Similarity=0.176 Sum_probs=29.9
Q ss_pred HHHHHccCCceEEeccCCCCCcchhhhhHHHHHHhCCeEEEcccCcc
Q 022968 171 IRRAHAVHPITAVQMEYSLWTREIEDDIIPLCRELGIGIVAYSPLGR 217 (289)
Q Consensus 171 l~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~gi~v~a~~pl~~ 217 (289)
++++++...+|++-+.-.... -.++...|-++|+.|+.=.|++.
T Consensus 54 ~~~ll~~~~~D~V~I~tp~~~---h~~~~~~~l~~g~~v~~EKP~~~ 97 (120)
T PF01408_consen 54 LEELLADEDVDAVIIATPPSS---HAEIAKKALEAGKHVLVEKPLAL 97 (120)
T ss_dssp HHHHHHHTTESEEEEESSGGG---HHHHHHHHHHTTSEEEEESSSSS
T ss_pred HHHHHHhhcCCEEEEecCCcc---hHHHHHHHHHcCCEEEEEcCCcC
Confidence 334444456666655433322 25788899999999999999985
No 267
>COG2874 FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=24.77 E-value=3.2e+02 Score=23.37 Aligned_cols=113 Identities=16% Similarity=0.116 Sum_probs=68.5
Q ss_pred HHHHHHHHHHHcCCCeEeCCcCcCCCChhHHHHHHHHhc-----CCCCCEEEEecccccccCCcccCCCCCHHHHHHHHH
Q 022968 43 VGCSIIKETFNRGITLFDTSDVYGVDHDNEIMVGKALKQ-----LPRDKIQLATKFGCFMLDGVSIGVKGSPEYVRKCCE 117 (289)
Q Consensus 43 ~~~~~l~~A~~~Gi~~~DtA~~Yg~~g~se~~lg~~l~~-----~~R~~~~I~tK~~~~~~~~~~~~~~~~~~~i~~~~~ 117 (289)
-+.+++.=+++.|.+.. .|. +|..+-+.|++ ++=.+.++..++...+... ....++...-+.-++
T Consensus 44 Lsqr~~YG~L~~g~~v~----yvs----Te~T~refi~qm~sl~ydv~~~~l~G~l~~~~~~~--~~~~~~~~~~~~~L~ 113 (235)
T COG2874 44 LSQRFAYGFLMNGYRVT----YVS----TELTVREFIKQMESLSYDVSDFLLSGRLLFFPVNL--EPVNWGRRSARKLLD 113 (235)
T ss_pred HHHHHHHHHHhCCceEE----EEE----echhHHHHHHHHHhcCCCchHHHhcceeEEEEecc--cccccChHHHHHHHH
Confidence 45777777889998875 233 56667777765 2333444444433322110 011345555566677
Q ss_pred HHHHHcCCCcccEEeecCCCCC------CCHHHHHHHHHHHHHcCccceeecCC
Q 022968 118 ASLKRLDVDYIDLYYQHRVDTS------VSIEDTMGELKKLVEEGKIKYIGLSE 165 (289)
Q Consensus 118 ~sL~~L~~~~iDl~~lh~~~~~------~~~~~~~~~l~~l~~~G~ir~iGvs~ 165 (289)
..++....-.-|++.+..-+.. ..+.+.+..+..|.+.||+--+=+..
T Consensus 114 ~l~~~~k~~~~dViIIDSls~~~~~~~~~~vl~fm~~~r~l~d~gKvIilTvhp 167 (235)
T COG2874 114 LLLEFIKRWEKDVIIIDSLSAFATYDSEDAVLNFMTFLRKLSDLGKVIILTVHP 167 (235)
T ss_pred HHHhhHHhhcCCEEEEecccHHhhcccHHHHHHHHHHHHHHHhCCCEEEEEeCh
Confidence 7777777777899999876432 12345677777888899987776654
No 268
>PF01476 LysM: LysM domain; InterPro: IPR018392 This domain is about 40 residues long and is found in a variety of enzymes involved in bacterial cell wall degradation []. This domain may have a general peptidoglycan binding function.; GO: 0016998 cell wall macromolecule catabolic process; PDB: 2DJP_A 3ZQD_A 1Y7M_B 4A52_A 2L9Y_A 1E0G_A.
Probab=24.58 E-value=79 Score=18.51 Aligned_cols=18 Identities=28% Similarity=0.512 Sum_probs=13.0
Q ss_pred HHHHHHHHHhCCCHHHHH
Q 022968 254 TRLETLAAKYGCTTPQLA 271 (289)
Q Consensus 254 ~~l~~ia~~~g~s~~q~a 271 (289)
+.+..||++++++..++.
T Consensus 7 Dtl~~IA~~~~~~~~~l~ 24 (44)
T PF01476_consen 7 DTLWSIAKRYGISVDELM 24 (44)
T ss_dssp --HHHHHHHTTS-HHHHH
T ss_pred CcHHHHHhhhhhhHhHHH
Confidence 468899999999998854
No 269
>PF01053 Cys_Met_Meta_PP: Cys/Met metabolism PLP-dependent enzyme; InterPro: IPR000277 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent enzymes involved in the metabolism of cysteine, homocysteine and methionine have been shown [, ] to be evolutionary related. These enzymes are proteins of about 400 amino-acid residues. The pyridoxal-P group is attached to a lysine residue located in the central section of these enzymes.; GO: 0030170 pyridoxal phosphate binding, 0006520 cellular amino acid metabolic process; PDB: 1PFF_A 2NMP_A 3ELP_B 3COG_C 1CS1_A 1E5E_B 3RI6_A 1E5F_A 2FQ6_B 1CL2_B ....
Probab=24.44 E-value=3e+02 Score=25.47 Aligned_cols=79 Identities=13% Similarity=0.111 Sum_probs=50.0
Q ss_pred HHHHHHHHHHHHcCccceeecCCCCHHHHHHHHcc-CCceEEeccCCCCCcchh-hhhHHHHHHhC-CeEEEcccCcccc
Q 022968 143 EDTMGELKKLVEEGKIKYIGLSEASADTIRRAHAV-HPITAVQMEYSLWTREIE-DDIIPLCRELG-IGIVAYSPLGRGF 219 (289)
Q Consensus 143 ~~~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~~~~-~~~~~~q~~~~~~~~~~~-~~~~~~~~~~g-i~v~a~~pl~~G~ 219 (289)
..+.+.++++....-|...=+...+.+.++++++. ....+++.+-|+...-.+ ..+.+.|+++| +.++.=+.++.+.
T Consensus 105 ~~t~~~~~~~l~~~gv~v~~~d~~d~~~l~~~l~~~t~~v~~EspsNP~l~v~Dl~~i~~~a~~~g~~~~vVDnT~atp~ 184 (386)
T PF01053_consen 105 GGTYRLLEELLPRFGVEVTFVDPTDLEALEAALRPNTKLVFLESPSNPTLEVPDLEAIAKLAKEHGDILVVVDNTFATPY 184 (386)
T ss_dssp HHHHHHHHHCHHHTTSEEEEESTTSHHHHHHHHCTTEEEEEEESSBTTTTB---HHHHHHHHHHTTT-EEEEECTTTHTT
T ss_pred CcchhhhhhhhcccCcEEEEeCchhHHHHHhhccccceEEEEEcCCCcccccccHHHHHHHHHHhCCceEEeecccccee
Confidence 44566666544444444333344456777776664 456667888888765433 67899999998 9999888887775
Q ss_pred CC
Q 022968 220 FA 221 (289)
Q Consensus 220 L~ 221 (289)
+.
T Consensus 185 ~~ 186 (386)
T PF01053_consen 185 NQ 186 (386)
T ss_dssp TC
T ss_pred ee
Confidence 43
No 270
>PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4.1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A ....
Probab=24.43 E-value=1.4e+02 Score=24.79 Aligned_cols=86 Identities=19% Similarity=0.231 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHHHHcCCCcccEEeecCCCCCCCHHHHHHHHHHHHHcCccceeecCC-CCHHHHHHHHccC-CceEEecc
Q 022968 109 PEYVRKCCEASLKRLDVDYIDLYYQHRVDTSVSIEDTMGELKKLVEEGKIKYIGLSE-ASADTIRRAHAVH-PITAVQME 186 (289)
Q Consensus 109 ~~~i~~~~~~sL~~L~~~~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~iGvs~-~~~~~l~~~~~~~-~~~~~q~~ 186 (289)
.+...+. -+.|-.-|+..+.+=+ -.+ +.++.++.++++--=-.+|..+ .+.++++.+++.. .|.
T Consensus 19 ~~~a~~~-~~al~~gGi~~iEiT~---~t~-----~a~~~I~~l~~~~p~~~vGAGTV~~~e~a~~a~~aGA~Fi----- 84 (196)
T PF01081_consen 19 PEDAVPI-AEALIEGGIRAIEITL---RTP-----NALEAIEALRKEFPDLLVGAGTVLTAEQAEAAIAAGAQFI----- 84 (196)
T ss_dssp GGGHHHH-HHHHHHTT--EEEEET---TST-----THHHHHHHHHHHHTTSEEEEES--SHHHHHHHHHHT-SEE-----
T ss_pred HHHHHHH-HHHHHHCCCCEEEEec---CCc-----cHHHHHHHHHHHCCCCeeEEEeccCHHHHHHHHHcCCCEE-----
Confidence 3444333 3455556766555432 111 2344444444432224588866 4788898888763 232
Q ss_pred CCCCCcchhhhhHHHHHHhCCeEEE
Q 022968 187 YSLWTREIEDDIIPLCRELGIGIVA 211 (289)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~gi~v~a 211 (289)
.++ ....+++++|+++|+.++.
T Consensus 85 vSP---~~~~~v~~~~~~~~i~~iP 106 (196)
T PF01081_consen 85 VSP---GFDPEVIEYAREYGIPYIP 106 (196)
T ss_dssp EES---S--HHHHHHHHHHTSEEEE
T ss_pred ECC---CCCHHHHHHHHHcCCcccC
Confidence 122 2247899999999999885
No 271
>PF10007 DUF2250: Uncharacterized protein conserved in archaea (DUF2250); InterPro: IPR019254 Members of this family of hypothetical archaeal proteins have no known function.
Probab=24.41 E-value=51 Score=23.80 Aligned_cols=49 Identities=20% Similarity=0.218 Sum_probs=36.1
Q ss_pred HHHHHHHHHcCCCcccEEeecCCCCCCCHHHHHHHHHHHHHcCccceeecCC
Q 022968 114 KCCEASLKRLDVDYIDLYYQHRVDTSVSIEDTMGELKKLVEEGKIKYIGLSE 165 (289)
Q Consensus 114 ~~~~~sL~~L~~~~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~iGvs~ 165 (289)
-.+-.=|.+.|.||.=.+.-.. ..+++++.+.+++|.+.|+|..+.=+.
T Consensus 10 ~~IL~hl~~~~~Dy~k~ia~~l---~~~~~~v~~~l~~Le~~GLler~~g~~ 58 (92)
T PF10007_consen 10 LKILQHLKKAGPDYAKSIARRL---KIPLEEVREALEKLEEMGLLERVEGKT 58 (92)
T ss_pred HHHHHHHHHHCCCcHHHHHHHH---CCCHHHHHHHHHHHHHCCCeEEecCcc
Confidence 3455666777888765544332 467899999999999999999887543
No 272
>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]
Probab=24.38 E-value=4.3e+02 Score=25.48 Aligned_cols=61 Identities=20% Similarity=0.137 Sum_probs=41.6
Q ss_pred CCCeEeCCcCcCCCChhHHHH------------------------HHHHhcCCCCCEEEEecccccccCCcccCCCCCHH
Q 022968 55 GITLFDTSDVYGVDHDNEIMV------------------------GKALKQLPRDKIQLATKFGCFMLDGVSIGVKGSPE 110 (289)
Q Consensus 55 Gi~~~DtA~~Yg~~g~se~~l------------------------g~~l~~~~R~~~~I~tK~~~~~~~~~~~~~~~~~~ 110 (289)
-||.+||--|-..+|+-|+++ ++||+. .=..++++.|+-.. +..++
T Consensus 69 ~INIvDTPGHADFGGEVERvl~MVDgvlLlVDA~EGpMPQTrFVlkKAl~~-gL~PIVVvNKiDrp---------~Arp~ 138 (603)
T COG1217 69 RINIVDTPGHADFGGEVERVLSMVDGVLLLVDASEGPMPQTRFVLKKALAL-GLKPIVVINKIDRP---------DARPD 138 (603)
T ss_pred EEEEecCCCcCCccchhhhhhhhcceEEEEEEcccCCCCchhhhHHHHHHc-CCCcEEEEeCCCCC---------CCCHH
Confidence 356777766544446666655 566664 34558888887432 45788
Q ss_pred HHHHHHHHHHHHcCC
Q 022968 111 YVRKCCEASLKRLDV 125 (289)
Q Consensus 111 ~i~~~~~~sL~~L~~ 125 (289)
.+..++-..+-.|+-
T Consensus 139 ~Vvd~vfDLf~~L~A 153 (603)
T COG1217 139 EVVDEVFDLFVELGA 153 (603)
T ss_pred HHHHHHHHHHHHhCC
Confidence 888888888888885
No 273
>PRK12558 glutamyl-tRNA synthetase; Provisional
Probab=24.31 E-value=1.8e+02 Score=27.57 Aligned_cols=59 Identities=17% Similarity=0.233 Sum_probs=39.1
Q ss_pred CCHHHHHHHHHHHHHHcCCCcccEEeecCCCCCCCHHHHHHHHHHHHHcCccceeecCCCCHHHHHH
Q 022968 107 GSPEYVRKCCEASLKRLDVDYIDLYYQHRVDTSVSIEDTMGELKKLVEEGKIKYIGLSEASADTIRR 173 (289)
Q Consensus 107 ~~~~~i~~~~~~sL~~L~~~~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~iGvs~~~~~~l~~ 173 (289)
.+.+...+.+.++|+.||+++ |-+ .......+..-+.+++|+++|++ |...| +.+++++
T Consensus 48 Rs~~~~~~~I~e~L~wLGI~~-De~----y~QSer~~~y~~~~e~L~e~G~A-Y~C~C--t~eel~~ 106 (445)
T PRK12558 48 RSKQEYADAIAEDLKWLGINW-DRT----FRQSDRFDRYDEAAEKLKAAGRL-YPCYE--TPEELEL 106 (445)
T ss_pred cchHHHHHHHHHHHHHcCCCC-Ccc----ccHHHHHHHHHHHHHHHHHCCCE-EEecC--chHHHHH
Confidence 456788899999999999974 732 11112234457888999999995 55554 3455543
No 274
>smart00148 PLCXc Phospholipase C, catalytic domain (part); domain X. Phosphoinositide-specific phospholipases C. These enzymes contain 2 regions (X and Y) which together form a TIM barrel-like structure containing the active site residues. Phospholipase C enzymes (PI-PLC) act as signal transducers that generate two second messengers, inositol-1,4,5-trisphosphate and diacylglycerol. The bacterial enzyme [6] appears to be a homologue of the mammalian PLCs.
Probab=24.17 E-value=65 Score=24.89 Aligned_cols=22 Identities=5% Similarity=-0.034 Sum_probs=17.0
Q ss_pred HHHHHHHHHHcCCCeEeCCcCc
Q 022968 44 GCSIIKETFNRGITLFDTSDVY 65 (289)
Q Consensus 44 ~~~~l~~A~~~Gi~~~DtA~~Y 65 (289)
....+..+++.|+|+||.--.+
T Consensus 30 q~~~i~~qL~~GvR~~dirv~~ 51 (135)
T smart00148 30 SVEGYIQALDHGCRCVELDCWD 51 (135)
T ss_pred cHHHHHHHHHhCCCEEEEEccc
Confidence 3567889999999999855433
No 275
>PRK14464 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=24.13 E-value=5.5e+02 Score=23.40 Aligned_cols=80 Identities=9% Similarity=0.069 Sum_probs=52.1
Q ss_pred CCHHHHHHHHHHHHHc-Cc---ccee---ecCCCCHHHHHHH---HccCCceEEeccCCCCCcc-----hh---hhhHHH
Q 022968 140 VSIEDTMGELKKLVEE-GK---IKYI---GLSEASADTIRRA---HAVHPITAVQMEYSLWTRE-----IE---DDIIPL 201 (289)
Q Consensus 140 ~~~~~~~~~l~~l~~~-G~---ir~i---Gvs~~~~~~l~~~---~~~~~~~~~q~~~~~~~~~-----~~---~~~~~~ 201 (289)
.+++++.+++.++.+. |+ +-|+ || |.+.+++.++ +...++.++-++||+.... .. .++.+.
T Consensus 223 ~~l~el~~a~~~~~~~~grri~~EyvLl~GV-NDs~e~a~~L~~~l~~~~~~vNLIPyN~v~g~~~~rp~~~~i~~f~~~ 301 (344)
T PRK14464 223 IAPEELVELGEAYARATGYPIQYQWTLLEGV-NDSDEEMDGIVRLLKGKYAVMNLIPYNSVDGDAYRRPSGERIVAMARY 301 (344)
T ss_pred CCHHHHHHHHHHHHHHHCCEEEEEEEEeCCC-CCCHHHHHHHHHHHhccccccceecCCccCCCCccCCCHHHHHHHHHH
Confidence 4677888888776554 32 2333 33 4556665554 4445677889999986532 11 456777
Q ss_pred HHHhCCeEEEcccCccccC
Q 022968 202 CRELGIGIVAYSPLGRGFF 220 (289)
Q Consensus 202 ~~~~gi~v~a~~pl~~G~L 220 (289)
.+++||.+..+...+..+.
T Consensus 302 L~~~gi~~tiR~~~G~di~ 320 (344)
T PRK14464 302 LHRRGVLTKVRNSAGQDVD 320 (344)
T ss_pred HHHCCceEEEECCCCCchh
Confidence 7899999999988876553
No 276
>PRK14457 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=24.13 E-value=5.5e+02 Score=23.36 Aligned_cols=135 Identities=11% Similarity=0.080 Sum_probs=79.1
Q ss_pred CCCEEEEecccccccCC----c--ccCCCCCHHHHHHHHHHHHHHcCCCcccEEeecC-CCCCCCHHHHHHHHHHHHHc-
Q 022968 84 RDKIQLATKFGCFMLDG----V--SIGVKGSPEYVRKCCEASLKRLDVDYIDLYYQHR-VDTSVSIEDTMGELKKLVEE- 155 (289)
Q Consensus 84 R~~~~I~tK~~~~~~~~----~--~~~~~~~~~~i~~~~~~sL~~L~~~~iDl~~lh~-~~~~~~~~~~~~~l~~l~~~- 155 (289)
|.-++|+|-+|....-. + ....+.+++.|..++....+.++. .++-+.+-. -++....+.+.+++..+.+.
T Consensus 100 r~t~cvSsqvGC~~~C~FC~tg~~g~~rnlt~~EIv~qv~~~~~~~~~-~~~~IvfmGmGEPlln~~~v~~~i~~l~~~~ 178 (345)
T PRK14457 100 RLTVCVSSQVGCPMACDFCATGKGGLKRSLKAHEIVDQVLTVQEDMQR-RVSHVVFMGMGEPLLNIDEVLAAIRCLNQDL 178 (345)
T ss_pred CCEEEEeCCCCCCCcCCcCCCCCCCCccccCHHHHHHHHHHHHHHhcC-CCCEEEEEecCccccCHHHHHHHHHHHhccc
Confidence 55677777766543311 1 122357899999999988877753 356444443 45555567788999999875
Q ss_pred Cc-cceeecCCCC-HHHHHHHHccC------CceEEeccCCCCCc-----------ch-h----hhhHHHHHHhCCeEEE
Q 022968 156 GK-IKYIGLSEAS-ADTIRRAHAVH------PITAVQMEYSLWTR-----------EI-E----DDIIPLCRELGIGIVA 211 (289)
Q Consensus 156 G~-ir~iGvs~~~-~~~l~~~~~~~------~~~~~q~~~~~~~~-----------~~-~----~~~~~~~~~~gi~v~a 211 (289)
|. .|.+=||+.. +..+.++.+.. ....+.+.+|-.+. .. . ..+.+++.+.|-.|..
T Consensus 179 ~i~~r~itvST~G~~~~i~~L~~~~~~~~~~~~~~laiSLha~~~e~r~~i~p~~~~~~l~~l~~~~~~y~~~~gr~I~i 258 (345)
T PRK14457 179 GIGQRRITVSTVGVPKTIPQLAELAFQRLGRLQFTLAVSLHAPNQKLRETLIPSAKNYPIENLLEDCRHYVAITGRRVSF 258 (345)
T ss_pred CCccCceEEECCCchhhHHHHHhhhhhhcccCceEEEEEeCCCCHHHHHHhcCCccCCCHHHHHHHHHHHHHHhCCEEEE
Confidence 33 3566677653 34455554432 12223444333221 11 1 3445666777888888
Q ss_pred cccCcccc
Q 022968 212 YSPLGRGF 219 (289)
Q Consensus 212 ~~pl~~G~ 219 (289)
.-||-.|+
T Consensus 259 ey~LIpGv 266 (345)
T PRK14457 259 EYILLGGV 266 (345)
T ss_pred EEEEECCc
Confidence 88887775
No 277
>PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=23.78 E-value=4.6e+02 Score=22.34 Aligned_cols=86 Identities=10% Similarity=0.050 Sum_probs=44.7
Q ss_pred HHcCCCcccEEeecCCCCCCC-HHHHHHHHHHHHHcCccceeecCC-CCHHHHHHHHccCCceEEeccCCCCCcc-hhhh
Q 022968 121 KRLDVDYIDLYYQHRVDTSVS-IEDTMGELKKLVEEGKIKYIGLSE-ASADTIRRAHAVHPITAVQMEYSLWTRE-IEDD 197 (289)
Q Consensus 121 ~~L~~~~iDl~~lh~~~~~~~-~~~~~~~l~~l~~~G~ir~iGvs~-~~~~~l~~~~~~~~~~~~q~~~~~~~~~-~~~~ 197 (289)
..+| +|-+.+|..+.+.. ..--|+.+.++.+.-.+.-|.-.. .+.+.+.++.+....+.+.+-=-+.... ...+
T Consensus 163 ~~~g---~~~ii~~~i~~~g~~~g~d~~~i~~~~~~~~ipvia~GGv~s~~d~~~~~~~~G~~gvivg~al~~~~~~~~~ 239 (253)
T PRK02083 163 EELG---AGEILLTSMDRDGTKNGYDLELTRAVSDAVNVPVIASGGAGNLEHFVEAFTEGGADAALAASIFHFGEITIGE 239 (253)
T ss_pred HHcC---CCEEEEcCCcCCCCCCCcCHHHHHHHHhhCCCCEEEECCCCCHHHHHHHHHhCCccEEeEhHHHHcCCCCHHH
Confidence 4555 56667765443211 011266667776655555554443 3567777776644443333311111111 1257
Q ss_pred hHHHHHHhCCeE
Q 022968 198 IIPLCRELGIGI 209 (289)
Q Consensus 198 ~~~~~~~~gi~v 209 (289)
+.+.|++.||.+
T Consensus 240 ~~~~~~~~~~~~ 251 (253)
T PRK02083 240 LKAYLAEQGIPV 251 (253)
T ss_pred HHHHHHHCCCcc
Confidence 888999888864
No 278
>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA. NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....
Probab=23.74 E-value=3.4e+02 Score=22.46 Aligned_cols=86 Identities=12% Similarity=0.063 Sum_probs=51.9
Q ss_pred CcccEEeecCCCCCCCHHHHHHHHHHHHHcCccceeecCCCCHHHHHHHHccCCceEEeccCC-CCCcchhhhhHHHHHH
Q 022968 126 DYIDLYYQHRVDTSVSIEDTMGELKKLVEEGKIKYIGLSEASADTIRRAHAVHPITAVQMEYS-LWTREIEDDIIPLCRE 204 (289)
Q Consensus 126 ~~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~~~~~~~~~~q~~~~-~~~~~~~~~~~~~~~~ 204 (289)
....+..+.+.. .-+...+|.+.|- ..+-++-.+.+.|.++++.....++-.... .........+++.|++
T Consensus 21 ~~~~V~~l~R~~-------~~~~~~~l~~~g~-~vv~~d~~~~~~l~~al~g~d~v~~~~~~~~~~~~~~~~~li~Aa~~ 92 (233)
T PF05368_consen 21 AGFSVRALVRDP-------SSDRAQQLQALGA-EVVEADYDDPESLVAALKGVDAVFSVTPPSHPSELEQQKNLIDAAKA 92 (233)
T ss_dssp TTGCEEEEESSS-------HHHHHHHHHHTTT-EEEES-TT-HHHHHHHHTTCSEEEEESSCSCCCHHHHHHHHHHHHHH
T ss_pred CCCCcEEEEecc-------chhhhhhhhcccc-eEeecccCCHHHHHHHHcCCceEEeecCcchhhhhhhhhhHHHhhhc
Confidence 345677777654 1223445666665 345666667888888888655444444433 2112233679999999
Q ss_pred hCCeEEEcccCcccc
Q 022968 205 LGIGIVAYSPLGRGF 219 (289)
Q Consensus 205 ~gi~v~a~~pl~~G~ 219 (289)
.||..+.++-++...
T Consensus 93 agVk~~v~ss~~~~~ 107 (233)
T PF05368_consen 93 AGVKHFVPSSFGADY 107 (233)
T ss_dssp HT-SEEEESEESSGT
T ss_pred cccceEEEEEecccc
Confidence 999999888887543
No 279
>COG2055 Malate/L-lactate dehydrogenases [Energy production and conversion]
Probab=23.71 E-value=5.7e+02 Score=23.40 Aligned_cols=87 Identities=14% Similarity=0.042 Sum_probs=49.6
Q ss_pred CCHHHHHHHHHHHHHHcCCCcccEEeecCCCCCCCHHHHHHHHHHHHHcCccceeecCCCCHHHHHHHHcc---------
Q 022968 107 GSPEYVRKCCEASLKRLDVDYIDLYYQHRVDTSVSIEDTMGELKKLVEEGKIKYIGLSEASADTIRRAHAV--------- 177 (289)
Q Consensus 107 ~~~~~i~~~~~~sL~~L~~~~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~~~~--------- 177 (289)
.+.+.++.-+++.|.+.|++-- ..+.+.+.|-..- ..|+.+|...++...++.
T Consensus 6 ~~~e~L~~~~~~vl~~~G~~ee------------~A~~vA~~lv~ad------~~G~~SHGv~r~p~yi~~l~~G~i~~~ 67 (349)
T COG2055 6 VSAEELKALIEEVLRKAGVPEE------------DARAVADVLVAAD------LRGVDSHGVGRLPGYVRRLKAGKINPD 67 (349)
T ss_pred ecHHHHHHHHHHHHHHcCCCHH------------HHHHHHHHHHHHH------hcCCcccchHHHHHHHHHHHcCCcCCC
Confidence 5789999999999999997531 1122223332222 246777777666655442
Q ss_pred CCc-------eEEeccCCCCCcc-----hhhhhHHHHHHhCCeEEE
Q 022968 178 HPI-------TAVQMEYSLWTRE-----IEDDIIPLCRELGIGIVA 211 (289)
Q Consensus 178 ~~~-------~~~q~~~~~~~~~-----~~~~~~~~~~~~gi~v~a 211 (289)
..| .+.++.=+--..+ .-+..++.|+++||++++
T Consensus 68 a~~~i~~~~~a~~~iDa~~g~G~~a~~~am~~aie~Ak~~Gia~va 113 (349)
T COG2055 68 AEPEIVREAPAVAVLDADGGFGQVAAKKAMELAIEKAKQHGIAAVA 113 (349)
T ss_pred CceEEEeecCcEEEEeCCCCcchHHHHHHHHHHHHHHHHhCeeEEE
Confidence 112 2222221111111 115689999999999775
No 280
>COG2022 ThiG Uncharacterized enzyme of thiazole biosynthesis [Nucleotide transport and metabolism]
Probab=23.64 E-value=3.5e+02 Score=23.30 Aligned_cols=54 Identities=19% Similarity=0.194 Sum_probs=42.4
Q ss_pred CCCHHHHHHHHHHHHHHcCCCcccEEeecCCCCCCC-HHHHHHHHHHHHHcCccc
Q 022968 106 KGSPEYVRKCCEASLKRLDVDYIDLYYQHRVDTSVS-IEDTMGELKKLVEEGKIK 159 (289)
Q Consensus 106 ~~~~~~i~~~~~~sL~~L~~~~iDl~~lh~~~~~~~-~~~~~~~l~~l~~~G~ir 159 (289)
..+.+...+..+-..+-+++++|-+=.+-.++...+ .-+++++.|.|+++|-+-
T Consensus 79 c~taeEAv~tArlARE~~~t~wiKlEVi~d~~tLlPD~~etl~Aae~Lv~eGF~V 133 (262)
T COG2022 79 CRTAEEAVRTARLAREALGTNWIKLEVIGDEKTLLPDPIETLKAAEQLVKEGFVV 133 (262)
T ss_pred cCCHHHHHHHHHHHHHHccCCeEEEEEecCCcccCCChHHHHHHHHHHHhCCCEE
Confidence 356777777778888999999998887776655443 458999999999999754
No 281
>cd08583 PI-PLCc_GDPD_SF_unchar1 Uncharacterized hypothetical proteins similar to the catalytic domains of Phosphoinositide-specific phospholipaseand Glycerophosphodiester phosphodiesterases. This subfamily corresponds to a group of uncharacterized hypothetical proteins similar to the catalytic domains of Phosphoinositide-specific phospholipase C (PI-PLC), and glycerophosphodiester phosphodiesterases (GP-GDE), and also sphingomyelinases D (SMases D) and similar proteins. They hydrolyze the 3'-5' phosphodiester bonds in different substrates, utilizing a similar mechanism of general base and acid catalysis involving two conserved histidine residues.
Probab=23.50 E-value=4.4e+02 Score=22.08 Aligned_cols=22 Identities=9% Similarity=0.372 Sum_probs=19.0
Q ss_pred CHHHHHHHHHHHHHcCCCeEeC
Q 022968 40 SHEVGCSIIKETFNRGITLFDT 61 (289)
Q Consensus 40 ~~~~~~~~l~~A~~~Gi~~~Dt 61 (289)
-.|+....++.|++.|++.|.+
T Consensus 13 ~pENTl~Af~~A~~~G~d~iE~ 34 (237)
T cd08583 13 TYTNSLDAFEHNYKKGYRVFEV 34 (237)
T ss_pred CCccHHHHHHHHHHhCCCEEEE
Confidence 4688999999999999998754
No 282
>PRK13109 flhB flagellar biosynthesis protein FlhB; Reviewed
Probab=23.13 E-value=82 Score=28.87 Aligned_cols=25 Identities=28% Similarity=0.517 Sum_probs=22.9
Q ss_pred hhhHHHHHHhCCeEEEcccCccccC
Q 022968 196 DDIIPLCRELGIGIVAYSPLGRGFF 220 (289)
Q Consensus 196 ~~~~~~~~~~gi~v~a~~pl~~G~L 220 (289)
..+.+.|++|||+++-.-||++.+.
T Consensus 301 ~~Ir~~A~e~~VPiven~pLARaLy 325 (358)
T PRK13109 301 LKIREIAEENGIPVIEDKPLARSLY 325 (358)
T ss_pred HHHHHHHHHcCCCEEeCHHHHHHHH
Confidence 6799999999999999999998874
No 283
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=23.12 E-value=4.9e+02 Score=22.45 Aligned_cols=100 Identities=13% Similarity=0.057 Sum_probs=0.0
Q ss_pred HHHHHHHHHHcCCCcccEEeecCC-------------------CCCCCHHHHHHHHHHHHHc-CccceeecCCCCH----
Q 022968 113 RKCCEASLKRLDVDYIDLYYQHRV-------------------DTSVSIEDTMGELKKLVEE-GKIKYIGLSEASA---- 168 (289)
Q Consensus 113 ~~~~~~sL~~L~~~~iDl~~lh~~-------------------~~~~~~~~~~~~l~~l~~~-G~ir~iGvs~~~~---- 168 (289)
.+...+.++.|--.-+|++=|--| .....++..++.++++++. =.+.-+.++-+++
T Consensus 23 ~~~~~~~~~~l~~~Gad~iElGiPfsDP~aDGpvIq~a~~~al~~G~~~~~~~~~v~~ir~~~~~~plv~m~Y~Npi~~~ 102 (256)
T TIGR00262 23 LETSLEIIKTLIEAGADALELGVPFSDPLADGPTIQAADLRALRAGMTPEKCFELLKKVRQKHPNIPIGLLTYYNLIFRK 102 (256)
T ss_pred HHHHHHHHHHHHHcCCCEEEECCCCCCCCCcCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCEEEEEeccHHhhh
Q ss_pred --HHHHHHHccCCceEEeccCCCCCcchhhhhHHHHHHhCCeEE-Eccc
Q 022968 169 --DTIRRAHAVHPITAVQMEYSLWTREIEDDIIPLCRELGIGIV-AYSP 214 (289)
Q Consensus 169 --~~l~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~gi~v~-a~~p 214 (289)
+...+.+....++.+-++.-+.... .++++.|+++|+..+ ..+|
T Consensus 103 G~e~f~~~~~~aGvdgviipDlp~ee~--~~~~~~~~~~gl~~i~lv~P 149 (256)
T TIGR00262 103 GVEEFYAKCKEVGVDGVLVADLPLEES--GDLVEAAKKHGVKPIFLVAP 149 (256)
T ss_pred hHHHHHHHHHHcCCCEEEECCCChHHH--HHHHHHHHHCCCcEEEEECC
No 284
>COG2861 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=22.89 E-value=3.1e+02 Score=23.72 Aligned_cols=26 Identities=23% Similarity=0.373 Sum_probs=18.7
Q ss_pred CHHHHHHHHHHHHHcCccceeecCCCC
Q 022968 141 SIEDTMGELKKLVEEGKIKYIGLSEAS 167 (289)
Q Consensus 141 ~~~~~~~~l~~l~~~G~ir~iGvs~~~ 167 (289)
+.++..+.++..+.+ ---++|+.||-
T Consensus 104 s~~e~~~rl~~a~~~-v~~~~GlnNhm 129 (250)
T COG2861 104 SAEEILRRLRKAMNK-VPDAVGLNNHM 129 (250)
T ss_pred CHHHHHHHHHHHHhh-Cccceeehhhh
Confidence 346778888877766 55678888874
No 285
>PRK14476 nitrogenase molybdenum-cofactor biosynthesis protein NifN; Provisional
Probab=22.84 E-value=6.6e+02 Score=23.79 Aligned_cols=108 Identities=14% Similarity=0.094 Sum_probs=53.1
Q ss_pred cCcCCCChhHHHHHHHHhc----CCCCCEEEEecccccccCCcccCCCCCHHHHHHHHHHHHHHcCCCcccEEeecCCCC
Q 022968 63 DVYGVDHDNEIMVGKALKQ----LPRDKIQLATKFGCFMLDGVSIGVKGSPEYVRKCCEASLKRLDVDYIDLYYQHRVDT 138 (289)
Q Consensus 63 ~~Yg~~g~se~~lg~~l~~----~~R~~~~I~tK~~~~~~~~~~~~~~~~~~~i~~~~~~sL~~L~~~~iDl~~lh~~~~ 138 (289)
-.|| .|..|-++|++ .+.+=++|.|-+-...- .-+.+.+-+.++.-..+ ...+.++.++.|+.
T Consensus 72 ~VfG----g~~~L~~aI~~~~~~~~P~~I~V~ttC~~eiI-------GDDi~~v~~~~~~~~p~--~~~~pvi~v~tpgF 138 (455)
T PRK14476 72 TILG----GDENVEEAILNICKKAKPKIIGLCTTGLTETR-------GDDVAGALKEIRARHPE--LADTPIVYVSTPDF 138 (455)
T ss_pred eEeC----CHHHHHHHHHHHHHhhCCCEEEEeCcchHhhh-------hccHHHHHHHHHhhccc--cCCCeEEEecCCCC
Confidence 3666 45667777765 34455666665422111 11333333333222111 11367888888875
Q ss_pred CCCHH----HHHHHHHH-HH--------HcCccceeecCCC---CHHHHHHHHccCCceEE
Q 022968 139 SVSIE----DTMGELKK-LV--------EEGKIKYIGLSEA---SADTIRRAHAVHPITAV 183 (289)
Q Consensus 139 ~~~~~----~~~~~l~~-l~--------~~G~ir~iGvs~~---~~~~l~~~~~~~~~~~~ 183 (289)
..... .+++++.+ +. ++++|.-||-+++ +.+.++++++...+.++
T Consensus 139 ~g~~~~G~~~a~~al~~~~~~~~~~~~~~~~~VNiIgg~~~~~~D~~elk~lL~~~Gl~v~ 199 (455)
T PRK14476 139 KGALEDGWAAAVEAIVEALVPPASSTGRRPRQVNVLPGSHLTPGDIEELREIIEAFGLEPI 199 (455)
T ss_pred CCcHHHHHHHHHHHHHHHhcccccCCCCCCCcEEEECCCCCCcccHHHHHHHHHHcCCceE
Confidence 43322 23333322 22 2456888864443 45667777666554444
No 286
>PRK08247 cystathionine gamma-synthase; Reviewed
Probab=22.83 E-value=4.9e+02 Score=23.59 Aligned_cols=61 Identities=11% Similarity=0.138 Sum_probs=36.3
Q ss_pred ceeecCCCCHHHHHHHHcc-CCceEEeccCCCCCcc-hhhhhHHHHHHhCCeEEEcccCcccc
Q 022968 159 KYIGLSEASADTIRRAHAV-HPITAVQMEYSLWTRE-IEDDIIPLCRELGIGIVAYSPLGRGF 219 (289)
Q Consensus 159 r~iGvs~~~~~~l~~~~~~-~~~~~~q~~~~~~~~~-~~~~~~~~~~~~gi~v~a~~pl~~G~ 219 (289)
+..-+...+.+.+++++.. ....++..+.|+.... .-+++.+.|+++|+.++.=..++.++
T Consensus 117 ~v~~vd~~d~~~l~~~i~~~tklv~le~P~NP~~~~~dl~~I~~la~~~g~~lIvD~t~~~~~ 179 (366)
T PRK08247 117 RFVYVNTASLKAIEQAITPNTKAIFIETPTNPLMQETDIAAIAKIAKKHGLLLIVDNTFYTPV 179 (366)
T ss_pred eEEEECCCCHHHHHHhcccCceEEEEECCCCCCCcHHHHHHHHHHHHHcCCEEEEECCCcccc
Confidence 3333444466677766543 3344555677775432 22678889999998887655554443
No 287
>COG1908 FrhD Coenzyme F420-reducing hydrogenase, delta subunit [Energy production and conversion]
Probab=22.82 E-value=3.5e+02 Score=20.67 Aligned_cols=61 Identities=21% Similarity=0.320 Sum_probs=34.0
Q ss_pred hHHHHHHHHhcCCCCCEEEE-eccc-ccccCCcccCCCCCHHHHHHHHHHHHHHcCC--CcccEEeecCCC
Q 022968 71 NEIMVGKALKQLPRDKIQLA-TKFG-CFMLDGVSIGVKGSPEYVRKCCEASLKRLDV--DYIDLYYQHRVD 137 (289)
Q Consensus 71 se~~lg~~l~~~~R~~~~I~-tK~~-~~~~~~~~~~~~~~~~~i~~~~~~sL~~L~~--~~iDl~~lh~~~ 137 (289)
+-+.+-+||++ .-|-++|+ -|.+ .++.. -++..+.=.+-+.+.|++||+ ++++.+++...+
T Consensus 42 n~~fvl~Al~~-GaDGV~v~GC~~geCHy~~-----GN~ka~rR~~~lke~l~elgie~eRv~~~wiSa~E 106 (132)
T COG1908 42 NPEFVLKALRK-GADGVLVAGCKIGECHYIS-----GNYKAKRRMELLKELLKELGIEPERVRVLWISAAE 106 (132)
T ss_pred CHHHHHHHHHc-CCCeEEEecccccceeeec-----cchHHHHHHHHHHHHHHHhCCCcceEEEEEEehhh
Confidence 44566667765 33444443 2332 11111 123445556778999999987 477777666543
No 288
>COG2875 CobM Precorrin-4 methylase [Coenzyme metabolism]
Probab=22.76 E-value=3.6e+02 Score=23.23 Aligned_cols=101 Identities=16% Similarity=0.073 Sum_probs=60.6
Q ss_pred CCHHHHHHHHHHHHHHcCCCcccEEeecCCCCCCCHHHHHHHHHHHHHcCcccee--ecCCCCHHHHHHHHccCCceEEe
Q 022968 107 GSPEYVRKCCEASLKRLDVDYIDLYYQHRVDTSVSIEDTMGELKKLVEEGKIKYI--GLSEASADTIRRAHAVHPITAVQ 184 (289)
Q Consensus 107 ~~~~~i~~~~~~sL~~L~~~~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~i--Gvs~~~~~~l~~~~~~~~~~~~q 184 (289)
.+-+.|.+.+.+.-+ +--|+.=||.-|+. -...+++.|++|.+.|-=-.+ |||.|.+....--.+..-|.+.|
T Consensus 59 ~tLeeIi~~m~~a~~----~Gk~VvRLhSGDps-iYgA~~EQm~~L~~~gI~yevvPGVss~~AAAA~L~~ELT~P~vsQ 133 (254)
T COG2875 59 LTLEEIIDLMVDAVR----EGKDVVRLHSGDPS-IYGALAEQMRELEALGIPYEVVPGVSSFAAAAAALGIELTVPGVSQ 133 (254)
T ss_pred CCHHHHHHHHHHHHH----cCCeEEEeecCChh-HHHHHHHHHHHHHHcCCCeEEeCCchHHHHHHHHhCceeecCCcce
Confidence 455666555554444 44688889987764 345789999999999874444 88877654432222333343333
Q ss_pred ----ccCCCCCcchhhhhHHHHHHhCCeEEEc
Q 022968 185 ----MEYSLWTREIEDDIIPLCRELGIGIVAY 212 (289)
Q Consensus 185 ----~~~~~~~~~~~~~~~~~~~~~gi~v~a~ 212 (289)
.+.+.-..-++.+-++...+++....-|
T Consensus 134 tvilTR~sgrt~vpe~e~l~~la~~~aTm~I~ 165 (254)
T COG2875 134 TVILTRPSGRTPVPEKESLAALAKHGATMVIF 165 (254)
T ss_pred eEEEEccccCCCCCchhHHHHHHhcCceeEee
Confidence 2334333334567777777777665544
No 289
>cd00668 Ile_Leu_Val_MetRS_core catalytic core domain of isoleucyl, leucyl, valyl and methioninyl tRNA synthetases. Catalytic core domain of isoleucyl, leucyl, valyl and methioninyl tRNA synthetases. These class I enzymes are all monomers. However, in some species, MetRS functions as a homodimer, as a result of an additional C-terminal domain. These enzymes aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. Enzymes in this subfamily share an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids. MetRS has a significantly shorter insertion, which lacks the editing function.
Probab=22.72 E-value=1.4e+02 Score=26.54 Aligned_cols=48 Identities=21% Similarity=0.204 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHHHcCCCccc--EEe-ecCCCCCCCHHHHHHHHHHHHHcCccce
Q 022968 109 PEYVRKCCEASLKRLDVDYID--LYY-QHRVDTSVSIEDTMGELKKLVEEGKIKY 160 (289)
Q Consensus 109 ~~~i~~~~~~sL~~L~~~~iD--l~~-lh~~~~~~~~~~~~~~l~~l~~~G~ir~ 160 (289)
.+...+.+.+.+++||+.. | .+. =+.+ ...+.+++.++.|+++|.|-.
T Consensus 81 ~~~~~~~~~~~l~~lgI~~-Dw~~~~~T~~~---~~~~~v~~~f~~L~~~G~iY~ 131 (312)
T cd00668 81 VEEMSGEHKEDFRRLGISY-DWSDEYITTEP---EYSKAVELIFSRLYEKGLIYR 131 (312)
T ss_pred HHHHHHHHHHHHHHhCccc-cCCCCeECCCH---HHHHHHHHHHHHHHHCCCEEe
Confidence 4566788899999999853 4 322 2222 235678999999999999754
No 290
>COG1679 Predicted aconitase [General function prediction only]
Probab=22.52 E-value=6.3e+02 Score=23.44 Aligned_cols=105 Identities=15% Similarity=0.034 Sum_probs=63.3
Q ss_pred HHHHHHHHHcCCCeEeCCcCcCCCChhHHHHHHHHhcCCCCCEEEEecccccccCCcccCCCCCHH---HHHHHHHHHHH
Q 022968 45 CSIIKETFNRGITLFDTSDVYGVDHDNEIMVGKALKQLPRDKIQLATKFGCFMLDGVSIGVKGSPE---YVRKCCEASLK 121 (289)
Q Consensus 45 ~~~l~~A~~~Gi~~~DtA~~Yg~~g~se~~lg~~l~~~~R~~~~I~tK~~~~~~~~~~~~~~~~~~---~i~~~~~~sL~ 121 (289)
--++-.+..-||-+|.-+..-. -.+-+.+|.++....---+|.+..+.+.+.+. .+.-..+ --++.+..+.+
T Consensus 207 Gy~~G~~~~d~IP~~~~~~~p~--~d~lKalgAA~atsgavam~HvegvTPE~~~~---~~~d~~e~i~i~~~d~~da~~ 281 (403)
T COG1679 207 GYLAGEAAGDGIPYFRLALFPS--EDELKALGAAMATSGAVAMYHVEGVTPEARAL---AFGDKAEKIEIEREDIDDAWE 281 (403)
T ss_pred HHHHHHhccCCCCeeccCCCCC--HHHHHHHHHHHhhcCceeEEEecCCCcccccc---cccccCceeeeeHHHHHHHHH
Confidence 3456667788999998554333 34567889898864445567777766554211 0000011 12334444444
Q ss_pred HcC--CCcccEEeecCCCCCCCHHHHHHHHHHHHHcC
Q 022968 122 RLD--VDYIDLYYQHRVDTSVSIEDTMGELKKLVEEG 156 (289)
Q Consensus 122 ~L~--~~~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G 156 (289)
+|+ -+-+|++.|-+|-. +++|..+.++.|+..+
T Consensus 282 ~l~~~~~epdli~iGcPHa--S~~E~~~la~~l~~r~ 316 (403)
T COG1679 282 RLNTADGEPDLIALGCPHA--SLEELRRLAELLKGRK 316 (403)
T ss_pred HhhcCCCCCCEEEeCCCCC--CHHHHHHHHHHHhccC
Confidence 544 34789999998754 5677777777777776
No 291
>cd02742 GH20_hexosaminidase Beta-N-acetylhexosaminidases of glycosyl hydrolase family 20 (GH20) catalyze the removal of beta-1,4-linked N-acetyl-D-hexosamine residues from the non-reducing ends of N-acetyl-beta-D-hexosaminides including N-acetylglucosides and N-acetylgalactosides. These enzymes are broadly distributed in microorganisms, plants and animals, and play roles in various key physiological and pathological processes. These processes include cell structural integrity, energy storage, cellular signaling, fertilization, pathogen defense, viral penetration, the development of carcinomas, inflammatory events and lysosomal storage disorders. The GH20 enzymes include the eukaryotic beta-N-acetylhexosaminidases A and B, the bacterial chitobiases, dispersin B, and lacto-N-biosidase. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by the solvent or the enzyme, but by the substrate itself.
Probab=22.37 E-value=1.1e+02 Score=27.05 Aligned_cols=17 Identities=29% Similarity=0.470 Sum_probs=15.2
Q ss_pred hhhhHHHHHHhCCeEEE
Q 022968 195 EDDIIPLCRELGIGIVA 211 (289)
Q Consensus 195 ~~~~~~~~~~~gi~v~a 211 (289)
-++++++|+++||.||.
T Consensus 74 i~elv~yA~~rgI~viP 90 (303)
T cd02742 74 LKDIIEYAAARGIEVIP 90 (303)
T ss_pred HHHHHHHHHHcCCEEEE
Confidence 37899999999999985
No 292
>PRK09613 thiH thiamine biosynthesis protein ThiH; Reviewed
Probab=22.20 E-value=7e+02 Score=23.85 Aligned_cols=171 Identities=14% Similarity=0.164 Sum_probs=94.1
Q ss_pred CCHHHHHHHHHHHHHc-CCCeEeCCcCcCCC-C-hhHHHHHH--HHhc-CCCCCEEEEeccccccc-------------C
Q 022968 39 LSHEVGCSIIKETFNR-GITLFDTSDVYGVD-H-DNEIMVGK--ALKQ-LPRDKIQLATKFGCFML-------------D 99 (289)
Q Consensus 39 ~~~~~~~~~l~~A~~~-Gi~~~DtA~~Yg~~-g-~se~~lg~--~l~~-~~R~~~~I~tK~~~~~~-------------~ 99 (289)
.+.++..++++.|++. +++.=|.+..+..+ . .-+.+.-. .++. .-.+++++.+=+..... .
T Consensus 28 ~~~~~v~~il~Kal~~~~Ls~eEal~LL~~~~~~~le~L~~~A~~ir~~~~Gn~I~lfapLyiSN~C~n~C~YCgfs~~n 107 (469)
T PRK09613 28 PDKDEIREILEKAKEKKGLSPEEAAVLLNVEDPELLEEIFEAAREIKEKIYGNRIVLFAPLYISNYCVNNCVYCGFRRSN 107 (469)
T ss_pred CCHHHHHHHHHHHHcCCCCCHHHHHHHHcCCChhHHHHHHHHHHHHHHHHcCCEEEEEEeccccCCCCCCCccCCCccCC
Confidence 3566788888888864 66655655555421 1 12333322 2332 12234444332211000 0
Q ss_pred CcccCCCCCHHHHHHHHHHHHHHcCCCcccEEeecCCCCCCCHHHHHHHHHHHHH----cCccceeecC--CCCHHHHHH
Q 022968 100 GVSIGVKGSPEYVRKCCEASLKRLDVDYIDLYYQHRVDTSVSIEDTMGELKKLVE----EGKIKYIGLS--EASADTIRR 173 (289)
Q Consensus 100 ~~~~~~~~~~~~i~~~~~~sL~~L~~~~iDl~~lh~~~~~~~~~~~~~~l~~l~~----~G~ir~iGvs--~~~~~~l~~ 173 (289)
........+.+.|.+.++. ++..|...+-++-=..| +..+++...+.++.+++ .|.++.++|+ ..+.++++.
T Consensus 108 ~~i~r~~Ls~EEI~~ea~~-~~~~G~~~i~LvsGe~p-~~~~~eyi~e~i~~I~~~~~~~g~i~~v~inig~lt~eey~~ 185 (469)
T PRK09613 108 KEIKRKKLTQEEIREEVKA-LEDMGHKRLALVAGEDP-PNCDIEYILESIKTIYSTKHGNGEIRRVNVNIAPTTVENYKK 185 (469)
T ss_pred CCCCceECCHHHHHHHHHH-HHHCCCCEEEEEeCCCC-CCCCHHHHHHHHHHHHHhccccCcceeeEEEeecCCHHHHHH
Confidence 0011234688999999964 57799777655422222 34567777777777776 5677777764 456788887
Q ss_pred HHccC--CceEEeccCCC-----CC-----cch--hhhhHHHHHHhCCeEEE
Q 022968 174 AHAVH--PITAVQMEYSL-----WT-----REI--EDDIIPLCRELGIGIVA 211 (289)
Q Consensus 174 ~~~~~--~~~~~q~~~~~-----~~-----~~~--~~~~~~~~~~~gi~v~a 211 (289)
+.+.. ...++|-.||. ++ ++. .-+.++.+++.|+.-+.
T Consensus 186 LkeaGv~~~~l~qETY~~ety~~~hp~g~k~~y~~Rl~t~~rA~~aGi~~Vg 237 (469)
T PRK09613 186 LKEAGIGTYQLFQETYHKPTYEKMHPSGPKSDYDWRLTAMDRAMEAGIDDVG 237 (469)
T ss_pred HHHcCCCEEEeccccCCHHHHHhcCCCCCCCCHHHHHHHHHHHHHcCCCeeC
Confidence 76653 34445555542 11 111 14678888999987443
No 293
>PF01244 Peptidase_M19: Membrane dipeptidase (Peptidase family M19); InterPro: IPR008257 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of peptidases belong to the MEROPS peptidase family M19 (membrane dipeptidase family, clan MJ). The protein fold of the peptidase domain for members of this family resembles that of Klebsiella urease, the type example for clan MJ. Renal dipeptidase (rDP) (3.4.13.19 from EC), also known as microsomal dipeptidase, is a zinc-dependent metalloenzyme that hydrolyzes a wide range of dipeptides. It is involved in renal metabolism of glutathione and its conjugates. It is a homodimeric disulphide-linked glycoprotein attached to the renal brush border microvilli membrane by a GPI-anchor. A glutamate residue has recently been shown [,] to be important for the catalytic activity of rDP. rDP seems to be evolutionary related to hypothetical proteins in the PQQ biosynthesis operons of Acinetobacter calcoaceticus and Klebsiella pneumoniae.; GO: 0008235 metalloexopeptidase activity, 0008239 dipeptidyl-peptidase activity, 0016805 dipeptidase activity, 0006508 proteolysis; PDB: 3NEH_B 2RAG_D 3LU2_A 3B40_A 3LY0_A 3FDG_B 2I5G_B 3S2J_A 3S2N_A 3S2L_A ....
Probab=22.06 E-value=1.6e+02 Score=26.47 Aligned_cols=107 Identities=21% Similarity=0.228 Sum_probs=64.1
Q ss_pred HHHHHHHHHHHHcCCCeEeCCcCcCCCChhHHHHHHHHhcCCCCCEEEEecccccccCCcccCCCCCHHHHHHHHHHHHH
Q 022968 42 EVGCSIIKETFNRGITLFDTSDVYGVDHDNEIMVGKALKQLPRDKIQLATKFGCFMLDGVSIGVKGSPEYVRKCCEASLK 121 (289)
Q Consensus 42 ~~~~~~l~~A~~~Gi~~~DtA~~Yg~~g~se~~lg~~l~~~~R~~~~I~tK~~~~~~~~~~~~~~~~~~~i~~~~~~sL~ 121 (289)
+-.+++|++..+.|+ .+|.|.. ||+.+-.+++- . +..+|+|......-.+ ...+.+-+ +++..-+
T Consensus 160 ~~G~~vV~~mn~lGm-~vDvSH~------s~~t~~Dv~~~-s-~~PviaSHSn~ral~~--h~RNltDe----~iraia~ 224 (320)
T PF01244_consen 160 PFGREVVREMNRLGM-LVDVSHL------SEKTFWDVLEI-S-KKPVIASHSNARALCP--HPRNLTDE----QIRAIAE 224 (320)
T ss_dssp HHHHHHHHHHHHHT--EEE-TTB-------HHHHHHHHHH---SSEEEECCEEBTTTS----TTSB-HH----HHHHHHH
T ss_pred hHHHHHHHHHHHcCC-eeeeccC------CHHHHHHHHhh-c-CCCEEEeccChHhhCC--CCCCCCHH----HHHHHHH
Confidence 457999999999999 9999953 78888889874 2 4578888866543221 11123333 3333333
Q ss_pred HcCCCcccEEeecC---C--CCCCCHHHHHHHHHHHHHcCccceeecCC
Q 022968 122 RLDVDYIDLYYQHR---V--DTSVSIEDTMGELKKLVEEGKIKYIGLSE 165 (289)
Q Consensus 122 ~L~~~~iDl~~lh~---~--~~~~~~~~~~~~l~~l~~~G~ir~iGvs~ 165 (289)
+=|+ |=+.+... + +....+++.++.++.+++.+=+.+||+.+
T Consensus 225 ~GGv--iGi~~~~~fl~~~~~~~~~~~~~~~Hi~y~~~l~G~dhVgiGs 271 (320)
T PF01244_consen 225 RGGV--IGINFYPAFLGDDWDPRASLDDLVDHIDYIVDLVGIDHVGIGS 271 (320)
T ss_dssp TT-E--EEEESSHHHHSTTHSSG-BHHHHHHHHHHHHHHH-GGGEEEE-
T ss_pred CCcE--EEEEcchhhhcccccccccHHHHHHHHHHHHHhcCCCeEEECc
Confidence 4332 33333321 1 24456889999999998888899999954
No 294
>PRK11267 biopolymer transport protein ExbD; Provisional
Probab=22.03 E-value=2.2e+02 Score=22.00 Aligned_cols=54 Identities=24% Similarity=0.204 Sum_probs=35.1
Q ss_pred CCHHHHHHHHHHHHHHcCCCcccEEeecCCCCCCCHHHHHHHHHHHHHcCccceeecCC
Q 022968 107 GSPEYVRKCCEASLKRLDVDYIDLYYQHRVDTSVSIEDTMGELKKLVEEGKIKYIGLSE 165 (289)
Q Consensus 107 ~~~~~i~~~~~~sL~~L~~~~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~iGvs~ 165 (289)
.+.+.+...+++.++. .-+.-.+=..|.+.+.+.+.+.|..+++.| +..+++.+
T Consensus 81 v~~~~L~~~L~~~~~~----~~~~~V~I~aD~~~~~~~vv~vmd~l~~aG-~~~v~l~t 134 (141)
T PRK11267 81 VTDETMITALDALTEG----KKDTTIFFRADKTVDYETLMKVMDTLHQAG-YLKIGLVG 134 (141)
T ss_pred ccHHHHHHHHHHHHhc----CCCceEEEEcCCCCCHHHHHHHHHHHHHcC-CCeEEEEe
Confidence 4556666565554432 223323334567788999999999999999 55577755
No 295
>PRK10508 hypothetical protein; Provisional
Probab=21.91 E-value=2.1e+02 Score=25.91 Aligned_cols=43 Identities=14% Similarity=0.173 Sum_probs=29.7
Q ss_pred CCHHHHHHHHHHHHHHcCCCcccEEeecCCCCCCCHHHHHHHHHHHHH
Q 022968 107 GSPEYVRKCCEASLKRLDVDYIDLYYQHRVDTSVSIEDTMGELKKLVE 154 (289)
Q Consensus 107 ~~~~~i~~~~~~sL~~L~~~~iDl~~lh~~~~~~~~~~~~~~l~~l~~ 154 (289)
.+++.+.+.+++..+++|+|.+ +++.+. .+.++.++.++-|.+
T Consensus 286 Gtpe~V~~kl~~l~~~~g~del---~~~~~~--~~~e~~~~S~~lla~ 328 (333)
T PRK10508 286 GDKAKVRHGLQSILRETQADEI---MVNGQI--FDHQARLHSFELAMD 328 (333)
T ss_pred eCHHHHHHHHHHHHHHHCcCEE---EEECCC--CCHHHHHHHHHHHHH
Confidence 5899999999999999998876 333332 345555555555443
No 296
>cd04734 OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 3. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. One member of this subgroup, the Sinorhizobium meliloti stachydrine utilization protein stcD, has been idenified as a putative N-methylproline demethylase.
Probab=21.81 E-value=6e+02 Score=22.96 Aligned_cols=110 Identities=17% Similarity=0.239 Sum_probs=64.3
Q ss_pred CCCHHHHHHHH-------HHHHHcCCCeEeCCcCcCCCChhHHHHHHHHhcC--CCCCEEEEecccccccCCcccCCCCC
Q 022968 38 PLSHEVGCSII-------KETFNRGITLFDTSDVYGVDHDNEIMVGKALKQL--PRDKIQLATKFGCFMLDGVSIGVKGS 108 (289)
Q Consensus 38 ~~~~~~~~~~l-------~~A~~~Gi~~~DtA~~Yg~~g~se~~lg~~l~~~--~R~~~~I~tK~~~~~~~~~~~~~~~~ 108 (289)
.++.++..+++ +.|.++|+..+|---..| -++.++|... .|.|= .|.. ....
T Consensus 130 ~mt~~eI~~ii~~f~~AA~ra~~aGfDgVeih~ahG------yLl~qFlsp~~N~RtD~-----yGGs--------lenR 190 (343)
T cd04734 130 AMEEEDIEEIIAAFADAARRCQAGGLDGVELQAAHG------HLIDQFLSPLTNRRTDE-----YGGS--------LENR 190 (343)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEccccc------hHHHHhhCCCcCCCCCc-----CCCC--------HHHH
Confidence 45666655444 456789999998654444 2778887751 22211 1111 0123
Q ss_pred HHHHHHHHHHHHHHcCCCcccEEeecCCC---CCCCHHHHHHHHHHHHHcCccceeecCCC
Q 022968 109 PEYVRKCCEASLKRLDVDYIDLYYQHRVD---TSVSIEDTMGELKKLVEEGKIKYIGLSEA 166 (289)
Q Consensus 109 ~~~i~~~~~~sL~~L~~~~iDl~~lh~~~---~~~~~~~~~~~l~~l~~~G~ir~iGvs~~ 166 (289)
...+.+-++...+..|.+..=-+=|-+.+ .....++..+.+..|.+.|.+.+|=||..
T Consensus 191 ~r~~~eiv~~ir~~vg~~~~v~iRl~~~~~~~~G~~~~e~~~~~~~l~~~G~vd~i~vs~g 251 (343)
T cd04734 191 MRFLLEVLAAVRAAVGPDFIVGIRISGDEDTEGGLSPDEALEIAARLAAEGLIDYVNVSAG 251 (343)
T ss_pred hHHHHHHHHHHHHHcCCCCeEEEEeehhhccCCCCCHHHHHHHHHHHHhcCCCCEEEeCCC
Confidence 45667777777777775532111122211 11346788888899999988888888754
No 297
>PRK15108 biotin synthase; Provisional
Probab=21.76 E-value=6.1e+02 Score=22.99 Aligned_cols=108 Identities=14% Similarity=0.056 Sum_probs=59.7
Q ss_pred CCHHHHHHHHHHHHHHcCCCcccEEeecCCCC-CCCHHHHHHHHHHHHHcCccceeecCC--CCHHHHHHHHccCC----
Q 022968 107 GSPEYVRKCCEASLKRLDVDYIDLYYQHRVDT-SVSIEDTMGELKKLVEEGKIKYIGLSE--ASADTIRRAHAVHP---- 179 (289)
Q Consensus 107 ~~~~~i~~~~~~sL~~L~~~~iDl~~lh~~~~-~~~~~~~~~~l~~l~~~G~ir~iGvs~--~~~~~l~~~~~~~~---- 179 (289)
.+++.|.+.+.. ...+|+..+ .+...+.++ ...++...+.++.+++.|. .+.+|+ .+.++++++.+.+-
T Consensus 76 ls~eEI~~~a~~-~~~~G~~~i-~i~~~g~~p~~~~~e~i~~~i~~ik~~~i--~v~~s~G~ls~e~l~~LkeAGld~~n 151 (345)
T PRK15108 76 MEVEQVLESARK-AKAAGSTRF-CMGAAWKNPHERDMPYLEQMVQGVKAMGL--ETCMTLGTLSESQAQRLANAGLDYYN 151 (345)
T ss_pred CCHHHHHHHHHH-HHHcCCCEE-EEEecCCCCCcchHHHHHHHHHHHHhCCC--EEEEeCCcCCHHHHHHHHHcCCCEEe
Confidence 688888888765 556898887 333333222 3456677788888887664 233444 56777777654311
Q ss_pred --ceEEeccCCCC-C-cch--hhhhHHHHHHhCCeEEEcccCccc
Q 022968 180 --ITAVQMEYSLW-T-REI--EDDIIPLCRELGIGIVAYSPLGRG 218 (289)
Q Consensus 180 --~~~~q~~~~~~-~-~~~--~~~~~~~~~~~gi~v~a~~pl~~G 218 (289)
.+...--|.-+ . ... .-+.++.+++.|+.+-+-..++-|
T Consensus 152 ~~leT~p~~f~~I~~~~~~~~rl~~i~~a~~~G~~v~sg~i~Glg 196 (345)
T PRK15108 152 HNLDTSPEFYGNIITTRTYQERLDTLEKVRDAGIKVCSGGIVGLG 196 (345)
T ss_pred eccccChHhcCCCCCCCCHHHHHHHHHHHHHcCCceeeEEEEeCC
Confidence 11111111111 1 111 146778888888866544444433
No 298
>KOG3085 consensus Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=21.68 E-value=2e+02 Score=24.69 Aligned_cols=66 Identities=18% Similarity=0.222 Sum_probs=37.6
Q ss_pred CCHHHHHHHHHHHHHcCccceeec-CCCCHHHHHHHHc---c-CCceEEeccCCCCCcchhhhhHHHHH-HhCCe
Q 022968 140 VSIEDTMGELKKLVEEGKIKYIGL-SEASADTIRRAHA---V-HPITAVQMEYSLWTREIEDDIIPLCR-ELGIG 208 (289)
Q Consensus 140 ~~~~~~~~~l~~l~~~G~ir~iGv-s~~~~~~l~~~~~---~-~~~~~~q~~~~~~~~~~~~~~~~~~~-~~gi~ 208 (289)
...++..+.+++|+++| -.+|+ ||++. ++..+.. . ..||.+-..|-.-...+++.++.+|- ..|+.
T Consensus 113 ~~~~~~~~~lq~lR~~g--~~l~iisN~d~-r~~~~l~~~~l~~~fD~vv~S~e~g~~KPDp~If~~al~~l~v~ 184 (237)
T KOG3085|consen 113 KYLDGMQELLQKLRKKG--TILGIISNFDD-RLRLLLLPLGLSAYFDFVVESCEVGLEKPDPRIFQLALERLGVK 184 (237)
T ss_pred eeccHHHHHHHHHHhCC--eEEEEecCCcH-HHHHHhhccCHHHhhhhhhhhhhhccCCCChHHHHHHHHHhCCC
Confidence 34455669999999999 34555 66653 3333222 1 34555555555544555566666554 33554
No 299
>PRK11024 colicin uptake protein TolR; Provisional
Probab=21.63 E-value=2.1e+02 Score=22.13 Aligned_cols=52 Identities=19% Similarity=0.232 Sum_probs=33.5
Q ss_pred CHHHHHHHHHHHHHHcCCCcccEEeecCCCCCCCHHHHHHHHHHHHHcCccceeecC
Q 022968 108 SPEYVRKCCEASLKRLDVDYIDLYYQHRVDTSVSIEDTMGELKKLVEEGKIKYIGLS 164 (289)
Q Consensus 108 ~~~~i~~~~~~sL~~L~~~~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~iGvs 164 (289)
+.+.+...+++.+.. .-|...+=..|.+.+.+.+.+.|+.+++.| +..+++.
T Consensus 86 ~~~~L~~~l~~~~~~----~~~~~V~i~aD~~~~~~~vv~vmd~~k~aG-~~~v~l~ 137 (141)
T PRK11024 86 PEEQVVAEAKSRFKA----NPKTVFLIGGAKDVPYDEIIKALNLLHSAG-VKSVGLM 137 (141)
T ss_pred CHHHHHHHHHHHHhh----CCCceEEEEcCCCCCHHHHHHHHHHHHHcC-CCeEEEE
Confidence 555555555544432 234333444577788999999999999998 4446654
No 300
>PRK12721 secretion system apparatus protein SsaU; Reviewed
Probab=21.63 E-value=92 Score=28.43 Aligned_cols=25 Identities=36% Similarity=0.584 Sum_probs=22.6
Q ss_pred hhhHHHHHHhCCeEEEcccCccccC
Q 022968 196 DDIIPLCRELGIGIVAYSPLGRGFF 220 (289)
Q Consensus 196 ~~~~~~~~~~gi~v~a~~pl~~G~L 220 (289)
..+.+.|+++||+++-.-||++.+.
T Consensus 292 ~~Ir~iA~e~~VPiven~pLARaLY 316 (349)
T PRK12721 292 LHIVKLAERNGIPVVENIPLARALF 316 (349)
T ss_pred HHHHHHHHHcCCCEEeCHHHHHHHH
Confidence 5799999999999999999998764
No 301
>cd05560 Xcc1710_like Xcc1710_like family, specific to proteobacteria. Xcc1710 is a hypothetical protein from Xanthomonas campestris pv. campestris str. ATCC 33913, similar to Mth938, a hypothetical protein encoded by the Methanobacterium thermoautotrophicum (Mth) genome. Their three-dimensional structures have been determined, but their functions are unknown.
Probab=21.60 E-value=2.9e+02 Score=20.39 Aligned_cols=52 Identities=12% Similarity=0.110 Sum_probs=29.3
Q ss_pred cCCCCHHHHHHHHccCCceEEeccCCCCCcchhhhhHHHHHHhCCeEEEcccC
Q 022968 163 LSEASADTIRRAHAVHPITAVQMEYSLWTREIEDDIIPLCRELGIGIVAYSPL 215 (289)
Q Consensus 163 vs~~~~~~l~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~gi~v~a~~pl 215 (289)
.+..+.+.++.++... |+++-+--.--......++.+.++++||++..+..-
T Consensus 37 ~~~l~~e~l~~l~~~~-peiliiGTG~~~~~~~~~~~~~l~~~gi~vE~m~T~ 88 (109)
T cd05560 37 FEDLTAAHFEALLALQ-PEVILLGTGERQRFPPPALLAPLLARGIGVEVMDTQ 88 (109)
T ss_pred cccCCHHHHHHHHhcC-CCEEEEecCCCCCcCCHHHHHHHHHcCCeEEEECHH
Confidence 3445566666665542 344333211111111267889999999999876554
No 302
>cd07945 DRE_TIM_CMS Leptospira interrogans citramalate synthase (CMS) and related proteins, N-terminal catalytic TIM barrel domain. Citramalate synthase (CMS) catalyzes the conversion of pyruvate and acetyl-CoA to (R)-citramalate in the first dedicated step of the citramalate pathway. Citramalate is only found in Leptospira interrogans and a few other microorganisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center con
Probab=21.56 E-value=1.3e+02 Score=26.38 Aligned_cols=110 Identities=15% Similarity=0.158 Sum_probs=0.0
Q ss_pred ccCCCCCHHHHHHHHHHHHHHcCCCcccEEee-cCCCCCCCHHHHHHHHHHHHHcCccceeecCCCCHHHHHHHHcc---
Q 022968 102 SIGVKGSPEYVRKCCEASLKRLDVDYIDLYYQ-HRVDTSVSIEDTMGELKKLVEEGKIKYIGLSEASADTIRRAHAV--- 177 (289)
Q Consensus 102 ~~~~~~~~~~i~~~~~~sL~~L~~~~iDl~~l-h~~~~~~~~~~~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~~~~--- 177 (289)
.....++.+.-.+-++..+..+|+++|++-.. ..|++...+.+..+.-+.....-+++.+++... ...++.+.+.
T Consensus 11 ~~~~~~s~e~K~~i~~~L~~~~Gv~~IEvg~~~~s~~e~~av~~~~~~~~~~~~~~~~~~~a~~~~-~~~~~~A~~~g~~ 89 (280)
T cd07945 11 TSGVSFSPSEKLNIAKILLQELKVDRIEVASARVSEGEFEAVQKIIDWAAEEGLLDRIEVLGFVDG-DKSVDWIKSAGAK 89 (280)
T ss_pred CCCCccCHHHHHHHHHHHHHHhCCCEEEecCCCCCHHHHHHHHHHHHHhhhhccccCcEEEEecCc-HHHHHHHHHCCCC
Q ss_pred -----CCceEEeccCCCCCcchh-----hhhHHHHHHhCCeEEEc
Q 022968 178 -----HPITAVQMEYSLWTREIE-----DDIIPLCRELGIGIVAY 212 (289)
Q Consensus 178 -----~~~~~~q~~~~~~~~~~~-----~~~~~~~~~~gi~v~a~ 212 (289)
.+.+-.++..|+-....+ .+++++|+++|+.+..+
T Consensus 90 ~i~i~~~~S~~h~~~~~~~t~~e~l~~~~~~i~~a~~~G~~v~~~ 134 (280)
T cd07945 90 VLNLLTKGSLKHCTEQLRKTPEEHFADIREVIEYAIKNGIEVNIY 134 (280)
T ss_pred EEEEEEeCCHHHHHHHHCcCHHHHHHHHHHHHHHHHhCCCEEEEE
No 303
>PLN02438 inositol-3-phosphate synthase
Probab=21.51 E-value=4.9e+02 Score=25.07 Aligned_cols=49 Identities=18% Similarity=0.258 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHHcCCCcccEEeecCCCCCC----CHHHHHHHHHHHHHcCc
Q 022968 109 PEYVRKCCEASLKRLDVDYIDLYYQHRVDTSV----SIEDTMGELKKLVEEGK 157 (289)
Q Consensus 109 ~~~i~~~~~~sL~~L~~~~iDl~~lh~~~~~~----~~~~~~~~l~~l~~~G~ 157 (289)
.+.|++.+++-.++-++|++=++..-+-++.. ...++++.|++..+++.
T Consensus 206 ve~ir~DIr~Fk~~n~ld~vVVlwtAsTEr~~~~~~~~~~t~~~l~~ai~~~~ 258 (510)
T PLN02438 206 MDQIRKDIREFKEKNKVDKVVVLWTANTERYSNVVVGLNDTMENLLASIEKDE 258 (510)
T ss_pred HHHHHHHHHHHHHHhCCCeEEEEECCCCCCCCcCCCcccCCHHHHHHHHhcCC
Confidence 45777778777788888876555555544332 23467888888888765
No 304
>TIGR01430 aden_deam adenosine deaminase. This family includes the experimentally verified adenosine deaminases of mammals and E. coli. Other members of this family are predicted also to be adenosine deaminase, an enzyme of nucleotide degradation. This family is distantly related to AMP deaminase.
Probab=21.46 E-value=5.7e+02 Score=22.60 Aligned_cols=104 Identities=13% Similarity=0.059 Sum_probs=52.8
Q ss_pred CHHHHHHHHHHHHHHcCCCcccEEeecCCCCCCCHHHHHHHHHHHHHcCccceeecCCC-CHHHHHHHHccCCceEEecc
Q 022968 108 SPEYVRKCCEASLKRLDVDYIDLYYQHRVDTSVSIEDTMGELKKLVEEGKIKYIGLSEA-SADTIRRAHAVHPITAVQME 186 (289)
Q Consensus 108 ~~~~i~~~~~~sL~~L~~~~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~iGvs~~-~~~~l~~~~~~~~~~~~q~~ 186 (289)
+++.+++.++..++ .+-+.+--+-++..+...+.+...+.++..++.|.--.+=++-. +...+..++....++.+-.-
T Consensus 138 ~~~~~~~~~~~~~~-~~~~~vvg~~l~~~e~~~~~~~~~~~~~~A~~~g~~i~~Ha~E~~~~~~~~~~~~~~g~~ri~Hg 216 (324)
T TIGR01430 138 QPEAAEETLELAKP-YKEQTIVGFGLAGDERGGPPPDFVRAFAIARELGLHLTVHAGELGGPESVREALDDLGATRIGHG 216 (324)
T ss_pred CHHHHHHHHHHHHh-hccCcEEEecCCCCCCCCCHHHHHHHHHHHHHCCCCeEEecCCCCChHHHHHHHHHcCchhcchh
Confidence 46677777776665 22222322334443333445566677778888776555544422 23333333322222211111
Q ss_pred CCCCCcchhhhhHHHHHHhCCeEEEcccCc
Q 022968 187 YSLWTREIEDDIIPLCRELGIGIVAYSPLG 216 (289)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~gi~v~a~~pl~ 216 (289)
+++.. ..+.++..+++|+.+.. .|..
T Consensus 217 ~~l~~---~~~~i~~l~~~gi~v~~-cP~S 242 (324)
T TIGR01430 217 VRALE---DPELLKRLAQENITLEV-CPTS 242 (324)
T ss_pred hhhcc---CHHHHHHHHHcCceEEE-CCcc
Confidence 11211 24689999999998743 4443
No 305
>PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=21.44 E-value=6.1e+02 Score=22.92 Aligned_cols=126 Identities=13% Similarity=0.091 Sum_probs=67.0
Q ss_pred HHHhcCCCCCEEEEecccccccCCcccCCCCCHHHHHHHHHHHHHHcCCCcccEEeecCCCCCCCHHHHHHHHHHHHHcC
Q 022968 77 KALKQLPRDKIQLATKFGCFMLDGVSIGVKGSPEYVRKCCEASLKRLDVDYIDLYYQHRVDTSVSIEDTMGELKKLVEEG 156 (289)
Q Consensus 77 ~~l~~~~R~~~~I~tK~~~~~~~~~~~~~~~~~~~i~~~~~~sL~~L~~~~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G 156 (289)
..+....|+++-++|++....-..+-.....+. .+.+++-+.+++.| -+..+|.. +.++.....++.+..|
T Consensus 15 ~~lp~~s~~dvdlst~~~~~~l~~P~~inAM~t-~iN~~LA~~a~~~G----~~~~~~k~----~~e~~~~~~r~~~~~~ 85 (326)
T PRK05458 15 NKCIVNSRSECDTSVTLGPRTFKLPVVPANMQT-IIDEKIAEWLAENG----YFYIMHRF----DPEARIPFIKDMHEQG 85 (326)
T ss_pred CCCCCCCHHHcccceEECCcEecCcEEEecccc-hhHHHHHHHHHHcC----CEEEEecC----CHHHHHHHHHhccccc
Confidence 345446788888888875322111100111222 77788888888886 34557762 2233333334444557
Q ss_pred ccceeecCC--CCHHHHHHHHccC-CceEEeccCCCCCcchhhhhHHHHHHh--CCeEEE
Q 022968 157 KIKYIGLSE--ASADTIRRAHAVH-PITAVQMEYSLWTREIEDDIIPLCREL--GIGIVA 211 (289)
Q Consensus 157 ~ir~iGvs~--~~~~~l~~~~~~~-~~~~~q~~~~~~~~~~~~~~~~~~~~~--gi~v~a 211 (289)
++-.++++. ...+++.++++.. .++++++....-+.....+++...+++ ++.|++
T Consensus 86 l~v~~~vg~~~~~~~~~~~Lv~ag~~~d~i~iD~a~gh~~~~~e~I~~ir~~~p~~~vi~ 145 (326)
T PRK05458 86 LIASISVGVKDDEYDFVDQLAAEGLTPEYITIDIAHGHSDSVINMIQHIKKHLPETFVIA 145 (326)
T ss_pred cEEEEEecCCHHHHHHHHHHHhcCCCCCEEEEECCCCchHHHHHHHHHHHhhCCCCeEEE
Confidence 755555543 2234455555542 357888765553333335566666554 466665
No 306
>PRK14469 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=21.37 E-value=6e+02 Score=22.96 Aligned_cols=89 Identities=13% Similarity=0.128 Sum_probs=55.3
Q ss_pred EeecCCCCC-----------CCHHHHHHHHHHHHHc-Cc---cceeecC--CCCHHHHHHHH---ccCCceEEeccCCCC
Q 022968 131 YYQHRVDTS-----------VSIEDTMGELKKLVEE-GK---IKYIGLS--EASADTIRRAH---AVHPITAVQMEYSLW 190 (289)
Q Consensus 131 ~~lh~~~~~-----------~~~~~~~~~l~~l~~~-G~---ir~iGvs--~~~~~~l~~~~---~~~~~~~~q~~~~~~ 190 (289)
+-||.+++. .+++++++.++++.+. +. ++++-+. |.+.+.++++. ...+..++-++||+.
T Consensus 212 iSL~a~~~e~r~~i~p~~~~~~l~~Il~~l~~~~~~~~~~v~i~yvlI~g~NDs~ed~~~La~llk~~~~~VnLIpynp~ 291 (343)
T PRK14469 212 LSLHAPTNFKRDQIVPLNKKYSIEEIINAVKIYQKKTGNRVTIEYILIKGFNDEIEDAKKLAELLKGLKVFVNLIPVNPT 291 (343)
T ss_pred EEeCCCCHHHHHhhcCcCCCCCHHHHHHHHHHHHHHhCCeEEEEEEEECCCCCCHHHHHHHHHHHhccCcEEEEEecCCC
Confidence 456777542 2467888888877665 42 4555444 44555555443 434556777899986
Q ss_pred Ccc---hh----hhhHHHHHHhCCeEEEcccCcccc
Q 022968 191 TRE---IE----DDIIPLCRELGIGIVAYSPLGRGF 219 (289)
Q Consensus 191 ~~~---~~----~~~~~~~~~~gi~v~a~~pl~~G~ 219 (289)
... +. ..+.+..+++|+.+..+...+..+
T Consensus 292 ~~~~~~ps~e~l~~f~~~l~~~gi~vtvr~~~g~di 327 (343)
T PRK14469 292 VPGLEKPSRERIERFKEILLKNGIEAEIRREKGSDI 327 (343)
T ss_pred CccCCCCCHHHHHHHHHHHHHCCCeEEEeCCCCcch
Confidence 532 11 346667788899998887665443
No 307
>TIGR01404 FlhB_rel_III type III secretion protein, YscU/HrpY family. This model represents one of several families of proteins related to bacterial flagellar biosynthesis proteins and involved in bacterial type III protein secretion systems. This family is homologous to, but distinguished from, flagellar biosynthetic protein FlhB (TIGRFAMs model TIGR00328). This model may not identify all type III secretion system FlhB homologs.
Probab=21.28 E-value=93 Score=28.33 Aligned_cols=25 Identities=28% Similarity=0.444 Sum_probs=22.9
Q ss_pred hhhHHHHHHhCCeEEEcccCccccC
Q 022968 196 DDIIPLCRELGIGIVAYSPLGRGFF 220 (289)
Q Consensus 196 ~~~~~~~~~~gi~v~a~~pl~~G~L 220 (289)
..+.+.|++|||+++-.-||++.+.
T Consensus 291 ~~Ir~iA~e~~VPiven~pLAR~Ly 315 (342)
T TIGR01404 291 LAVRAYAEEAGIPVVRDIPLARQLY 315 (342)
T ss_pred HHHHHHHHHcCCCEeeCHHHHHHHH
Confidence 6799999999999999999998874
No 308
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin). Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....
Probab=21.21 E-value=3.3e+02 Score=19.75 Aligned_cols=19 Identities=26% Similarity=0.307 Sum_probs=9.0
Q ss_pred hhhHHHHHHh--CCeEEEccc
Q 022968 196 DDIIPLCREL--GIGIVAYSP 214 (289)
Q Consensus 196 ~~~~~~~~~~--gi~v~a~~p 214 (289)
.++.+..++. ++.++.-.|
T Consensus 69 ~~l~~~~k~~~p~~~iv~GG~ 89 (121)
T PF02310_consen 69 KRLARAIKERNPNIPIVVGGP 89 (121)
T ss_dssp HHHHHHHHTTCTTSEEEEEES
T ss_pred HHHHHHHHhcCCCCEEEEECC
Confidence 3444444444 455554333
No 309
>PF04748 Polysacc_deac_2: Divergent polysaccharide deacetylase; InterPro: IPR006837 This is a family of uncharacterised proteins that includes YibQ.; PDB: 2QV5_A 2NLY_A.
Probab=21.19 E-value=4e+02 Score=22.31 Aligned_cols=52 Identities=15% Similarity=0.128 Sum_probs=28.5
Q ss_pred CCHHHHHHHHHHHHHc-----CCCeEeCCcCcCCCChhHHHHHHHHhcC-CCCCEEEEeccc
Q 022968 39 LSHEVGCSIIKETFNR-----GITLFDTSDVYGVDHDNEIMVGKALKQL-PRDKIQLATKFG 94 (289)
Q Consensus 39 ~~~~~~~~~l~~A~~~-----Gi~~~DtA~~Yg~~g~se~~lg~~l~~~-~R~~~~I~tK~~ 94 (289)
+++++..+.+..|++. |+|.-=.+..-. ++..+...++.. .|.-+||=++..
T Consensus 71 ~~~~~i~~~l~~al~~vp~a~GvnNhmGS~~T~----~~~~m~~vl~~l~~~gl~FvDS~T~ 128 (213)
T PF04748_consen 71 MSEEEIRKRLEAALARVPGAVGVNNHMGSRFTS----DREAMRWVLEVLKERGLFFVDSRTT 128 (213)
T ss_dssp S-HHHHHHHHHHHHCCSTT-SEEEEEE-CCHHC-----HHHHHHHHHHHHHTT-EEEE-S--
T ss_pred CCHHHHHHHHHHHHHHCCCcEEEecCCCccccC----CHHHHHHHHHHHHHcCCEEEeCCCC
Confidence 5889999999999976 444332222222 566677666653 566666645543
No 310
>cd01297 D-aminoacylase D-aminoacylases (N-acyl-D-Amino acid amidohydrolases) catalyze the hydrolysis of N-acyl-D-amino acids to produce the corresponding D-amino acids, which are used as intermediates in the synthesis of pesticides, bioactive peptides, and antibiotics.
Probab=21.16 E-value=6.6e+02 Score=23.19 Aligned_cols=112 Identities=10% Similarity=-0.031 Sum_probs=60.5
Q ss_pred HHHHHHHHHHHHcCCCeEeCCcCcCC-CChhHHHHHHHHhcCCCCCEEEEecccccccCCcccCCCCCHHHHHHHHHHHH
Q 022968 42 EVGCSIIKETFNRGITLFDTSDVYGV-DHDNEIMVGKALKQLPRDKIQLATKFGCFMLDGVSIGVKGSPEYVRKCCEASL 120 (289)
Q Consensus 42 ~~~~~~l~~A~~~Gi~~~DtA~~Yg~-~g~se~~lg~~l~~~~R~~~~I~tK~~~~~~~~~~~~~~~~~~~i~~~~~~sL 120 (289)
++..++++.|++.|+.-|=+...|.. ...++..+-+.++...+-+..|.+..-... ....+.+.+.++.+.
T Consensus 167 ~~~~~l~~~al~~Ga~g~~~~~~y~~~~~~~~~~l~~~~~~a~~~g~~v~~H~e~~~--------~~e~~av~~~~~~a~ 238 (415)
T cd01297 167 AKMRELLREALEAGALGISTGLAYAPRLYAGTAELVALARVAARYGGVYQTHVRYEG--------DSILEALDELLRLGR 238 (415)
T ss_pred HHHHHHHHHHHHCCCeEEEcccccCCcccCCHHHHHHHHHHHHHcCCEEEEEECccc--------ccHHHHHHHHHHHHH
Confidence 34577788899999988865555521 023566666666543333556666543211 112334444443332
Q ss_pred HHcCCCcccEEeecCCCCC----CCHHHHHHHHHHHHHcCccceeecCC
Q 022968 121 KRLDVDYIDLYYQHRVDTS----VSIEDTMGELKKLVEEGKIKYIGLSE 165 (289)
Q Consensus 121 ~~L~~~~iDl~~lh~~~~~----~~~~~~~~~l~~l~~~G~ir~iGvs~ 165 (289)
+.| .-+.+.|..... ....++++.+++.+++|.--...++.
T Consensus 239 -~~g---~r~~i~H~ss~~~~~~~~~~~~l~~i~~a~~~G~~v~~e~~p 283 (415)
T cd01297 239 -ETG---RPVHISHLKSAGAPNWGKIDRLLALIEAARAEGLQVTADVYP 283 (415)
T ss_pred -HhC---CCEEEEEEecCCCcccchHHHHHHHHHHHHHhCCcEEEEeCC
Confidence 334 346667754332 23456677777888877533333444
No 311
>cd00814 MetRS_core catalytic core domain of methioninyl-tRNA synthetases. Methionine tRNA synthetase (MetRS) catalytic core domain. This class I enzyme aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. MetRS, which consists of the core domain and an anti-codon binding domain, functions as a monomer. However, in some species the anti-codon binding domain is followed by an EMAP domain. In this case, MetRS functions as a homodimer. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. As a result of a deletion event, MetRS has a significantly shorter core domain insertion than IleRS, ValRS, and LeuR. Consequently, the MetRS insertion lacks the editing function.
Probab=21.04 E-value=1.5e+02 Score=26.44 Aligned_cols=47 Identities=21% Similarity=0.256 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHHcCCCcccEEeecCCCCCCCHHHHHHHHHHHHHcCcc
Q 022968 109 PEYVRKCCEASLKRLDVDYIDLYYQHRVDTSVSIEDTMGELKKLVEEGKI 158 (289)
Q Consensus 109 ~~~i~~~~~~sL~~L~~~~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~i 158 (289)
.+...+.+++.+++||++ .|.+.-. ........+.+.+++|+++|.+
T Consensus 68 ~~~~~~~~~~~l~~LgI~-~D~~~~t--t~~~~~~~v~~i~~~L~ekG~i 114 (319)
T cd00814 68 CDKYHEIFKDLFKWLNIS-FDYFIRT--TSPRHKEIVQEFFKKLYENGYI 114 (319)
T ss_pred HHHHHHHHHHHHHHcCCc-CCCCeeC--CCHHHHHHHHHHHHHHHHCCCE
Confidence 456678889999999996 5754322 1112334678899999999998
No 312
>PRK03892 ribonuclease P protein component 3; Provisional
Probab=20.95 E-value=5.1e+02 Score=21.85 Aligned_cols=121 Identities=12% Similarity=0.019 Sum_probs=61.0
Q ss_pred hHHHHHHHHhcCCCCCEEEEecccccccCCcccCCCCCHHHHHHHHHHHHHHcCCCcccEEeecCCCCCCCHHHHHHHHH
Q 022968 71 NEIMVGKALKQLPRDKIQLATKFGCFMLDGVSIGVKGSPEYVRKCCEASLKRLDVDYIDLYYQHRVDTSVSIEDTMGELK 150 (289)
Q Consensus 71 se~~lg~~l~~~~R~~~~I~tK~~~~~~~~~~~~~~~~~~~i~~~~~~sL~~L~~~~iDl~~lh~~~~~~~~~~~~~~l~ 150 (289)
+-++-.+|+ ++++.+-|+-.... .+...+++.+++.-+..|.+ -+.|-..++. .+.
T Consensus 19 ~~~~~~~~~-----~~~~~~~~~~~~~~--------~~~~~~~~d~~~l~~~yg~~---gv~i~~~np~--------~l~ 74 (216)
T PRK03892 19 AYELAKEWF-----DEVVFTKKLVLEDS--------PDFGSLKEELKELKKEYGKV---AILLVTPKPS--------LIR 74 (216)
T ss_pred HHHHHHHHh-----hheEEEEEEeccCC--------CChhhhHHHHHHHHHhcCcc---eEEEecCCHH--------HHH
Confidence 344555666 44777777644321 13345667777777777754 4444443332 122
Q ss_pred HHHHcCccceeecCCCCHHHHHHHHccCCceEEeccCC-CCCcchhhhhHHHHHHhCCeE-EEcccCc
Q 022968 151 KLVEEGKIKYIGLSEASADTIRRAHAVHPITAVQMEYS-LWTREIEDDIIPLCRELGIGI-VAYSPLG 216 (289)
Q Consensus 151 ~l~~~G~ir~iGvs~~~~~~l~~~~~~~~~~~~q~~~~-~~~~~~~~~~~~~~~~~gi~v-~a~~pl~ 216 (289)
.++++=+.--+.|-.-+...-..+++. .+|+.-.++- .-+...+.-+...|.++||++ +..+|+-
T Consensus 75 ~~V~k~~~~vv~V~GGd~~vNR~AvE~-~VDVL~~P~~~Rkd~g~dHVLAKlAa~n~VAIe~~L~plL 141 (216)
T PRK03892 75 EVKQRFLNYLIYVQGGDLRVNRYAIER-GVDAIISPWVGRKDPGIDHVLARMAAKRGVAIGFSLSPLL 141 (216)
T ss_pred HHHHhccceEEEEECCcHHHHHHHHhc-ccceeecccccCcCCCccHHHHHHHHHcCeEEEEecHHHH
Confidence 223322455566655555555555554 5555433322 111122334666777777765 3444543
No 313
>PRK08084 DNA replication initiation factor; Provisional
Probab=20.82 E-value=2.6e+02 Score=23.61 Aligned_cols=45 Identities=7% Similarity=0.169 Sum_probs=32.7
Q ss_pred cccEEeecCCCCC---CCH-HHHHHHHHHHHHcCccceeecCCCCHHHH
Q 022968 127 YIDLYYQHRVDTS---VSI-EDTMGELKKLVEEGKIKYIGLSEASADTI 171 (289)
Q Consensus 127 ~iDl~~lh~~~~~---~~~-~~~~~~l~~l~~~G~ir~iGvs~~~~~~l 171 (289)
..|+++|...+.. ... ++.++.+..+++.|+++-|+.|+.++..+
T Consensus 97 ~~dlliiDdi~~~~~~~~~~~~lf~l~n~~~e~g~~~li~ts~~~p~~l 145 (235)
T PRK08084 97 QLSLVCIDNIECIAGDELWEMAIFDLYNRILESGRTRLLITGDRPPRQL 145 (235)
T ss_pred hCCEEEEeChhhhcCCHHHHHHHHHHHHHHHHcCCCeEEEeCCCChHHc
Confidence 3588888765432 112 34678889999999999999999877663
No 314
>PF01791 DeoC: DeoC/LacD family aldolase; InterPro: IPR002915 This family includes the enzyme deoxyribose-phosphate aldolase, which is involved in nucleotide metabolism. 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde The family also includes a group of related bacterial proteins of unknown function, see examples Q57843 from SWISSPROT and P76143 from SWISSPROT.; GO: 0016829 lyase activity; PDB: 2A4A_A 1VCV_B 1P1X_A 1KTN_B 1JCL_A 1JCJ_A 1MZH_A 3GKF_D 3GLC_L 3GND_N ....
Probab=20.69 E-value=4.5e+02 Score=22.10 Aligned_cols=99 Identities=19% Similarity=0.156 Sum_probs=59.1
Q ss_pred CHH-HHHHHHHHHHHcCCCeEeCCcCcCCCChhHHHHHHHHhcCCCCCEEEEecccccccCCcccCCCCCHHHH-----H
Q 022968 40 SHE-VGCSIIKETFNRGITLFDTSDVYGVDHDNEIMVGKALKQLPRDKIQLATKFGCFMLDGVSIGVKGSPEYV-----R 113 (289)
Q Consensus 40 ~~~-~~~~~l~~A~~~Gi~~~DtA~~Yg~~g~se~~lg~~l~~~~R~~~~I~tK~~~~~~~~~~~~~~~~~~~i-----~ 113 (289)
+.. +..+.++.|++.|++-+-+.+.|. ....+.+.. .+-++-++.++.... ...+.- .
T Consensus 16 ~~~~~~~~~~~~a~~~~~~av~v~p~~~------~~~~~~~~~-~~~~~~~vi~fp~g~---------~~~~~k~~~~~~ 79 (236)
T PF01791_consen 16 TGEEDIKKLCREAIEYGFDAVCVTPGYV------KPAAELLAG-SGVKVGLVIGFPFGT---------STTEPKGYDQIV 79 (236)
T ss_dssp HHHHHHHHHHHHHHHHTSSEEEEEGGGH------HHHHHHSTT-STSEEEEEESTTTSS---------STHHHHTCEEEH
T ss_pred CchhhHHHHHHHHHHhCCCEEEECHHHH------HHHHHHhhc-cccccceEEEeCCCC---------CccccccccchH
Confidence 444 889999999999999998887765 233444442 223455555543221 122222 4
Q ss_pred HHHHHHHHHcCCCcccEEeecCCCCCCCHHHHHHHHHHHHHc
Q 022968 114 KCCEASLKRLDVDYIDLYYQHRVDTSVSIEDTMGELKKLVEE 155 (289)
Q Consensus 114 ~~~~~sL~~L~~~~iDl~~lh~~~~~~~~~~~~~~l~~l~~~ 155 (289)
.++++.+ ++|-|-+|+++-..+......+...+.+.+++++
T Consensus 80 ~~ve~A~-~~GAd~vd~vi~~~~~~~~~~~~~~~~i~~v~~~ 120 (236)
T PF01791_consen 80 AEVEEAI-RLGADEVDVVINYGALGSGNEDEVIEEIAAVVEE 120 (236)
T ss_dssp HHHHHHH-HTT-SEEEEEEEHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHH-HcCCceeeeeccccccccccHHHHHHHHHHHHHH
Confidence 5666665 4999999998877544333345555555555554
No 315
>PRK09282 pyruvate carboxylase subunit B; Validated
Probab=20.60 E-value=4e+02 Score=26.32 Aligned_cols=92 Identities=13% Similarity=0.166 Sum_probs=0.0
Q ss_pred HHHHHHHHHHcCCCcccEE----------eecCCCCCCCHHHHHHHHHHHHHc-Cccc---------eeecCCCCHHHHH
Q 022968 113 RKCCEASLKRLDVDYIDLY----------YQHRVDTSVSIEDTMGELKKLVEE-GKIK---------YIGLSEASADTIR 172 (289)
Q Consensus 113 ~~~~~~sL~~L~~~~iDl~----------~lh~~~~~~~~~~~~~~l~~l~~~-G~ir---------~iGvs~~~~~~l~ 172 (289)
+..+-..|.++|++.+++. +++. +-|+.|..+++. ..++ .+|.++++.+.++
T Consensus 28 ~l~ia~~l~~~G~~~iE~~ggatfd~~~rfl~e--------dp~e~l~~l~~~~~~~~l~~l~Rg~N~~gy~~ypd~vv~ 99 (592)
T PRK09282 28 MLPIAEKLDKVGFWSLEVWGGATFDVCIRYLNE--------DPWERLRKLKKALPNTPLQMLLRGQNLVGYRHYPDDVVE 99 (592)
T ss_pred HHHHHHHHHHcCCCEEEecCCccchhhcccCCc--------cHHHHHHHHHHhCCCCEEEEEeccccccccccccchhhH
Q ss_pred HHHcc---CCceEEeccCCCCCcchhhhhHHHHHHhCCeEEEc
Q 022968 173 RAHAV---HPITAVQMEYSLWTREIEDDIIPLCRELGIGIVAY 212 (289)
Q Consensus 173 ~~~~~---~~~~~~q~~~~~~~~~~~~~~~~~~~~~gi~v~a~ 212 (289)
..++. ..++++.+...+.+...-...+++++++|..+.+.
T Consensus 100 ~~v~~A~~~Gvd~irif~~lnd~~n~~~~i~~ak~~G~~v~~~ 142 (592)
T PRK09282 100 KFVEKAAENGIDIFRIFDALNDVRNMEVAIKAAKKAGAHVQGT 142 (592)
T ss_pred HHHHHHHHCCCCEEEEEEecChHHHHHHHHHHHHHcCCEEEEE
No 316
>cd01948 EAL EAL domain. This domain is found in diverse bacterial signaling proteins. It is called EAL after its conserved residues and is also known as domain of unknown function 2 (DUF2). The EAL domain has been shown to stimulate degradation of a second messenger, cyclic di-GMP, and is a good candidate for a diguanylate phosphodiesterase function. Together with the GGDEF domain, EAL might be involved in regulating cell surface adhesiveness in bacteria.
Probab=20.45 E-value=4.1e+02 Score=21.72 Aligned_cols=98 Identities=17% Similarity=0.211 Sum_probs=56.4
Q ss_pred HHHHHHHHHHHHHcCCCcccEEeecCCC--CCCCHHHHHHHHHHHHHcCccceeecCCCCH--HHHHHHHccCCceEEec
Q 022968 110 EYVRKCCEASLKRLDVDYIDLYYQHRVD--TSVSIEDTMGELKKLVEEGKIKYIGLSEASA--DTIRRAHAVHPITAVQM 185 (289)
Q Consensus 110 ~~i~~~~~~sL~~L~~~~iDl~~lh~~~--~~~~~~~~~~~l~~l~~~G~ir~iGvs~~~~--~~l~~~~~~~~~~~~q~ 185 (289)
+.....+...++..+... +-+.+--++ .........+.++.|++.|-= +++.++.. ..+..+ ...+|+++-+
T Consensus 98 ~~~~~~~~~~l~~~~~~~-~~l~iei~e~~~~~~~~~~~~~~~~l~~~G~~--l~ld~~g~~~~~~~~l-~~~~~d~iKl 173 (240)
T cd01948 98 PDFLDRLLELLAETGLPP-RRLVLEITESALIDDLEEALATLRRLRALGVR--IALDDFGTGYSSLSYL-KRLPVDYLKI 173 (240)
T ss_pred cHHHHHHHHHHHHcCCCH-HHEEEEEecchhhCCHHHHHHHHHHHHHCCCe--EEEeCCCCcHhhHHHH-HhCCCCEEEE
Confidence 344566777888887654 222232222 223444578899999999873 44444432 222222 2234566655
Q ss_pred cCCCCCc--------chhhhhHHHHHHhCCeEEE
Q 022968 186 EYSLWTR--------EIEDDIIPLCRELGIGIVA 211 (289)
Q Consensus 186 ~~~~~~~--------~~~~~~~~~~~~~gi~v~a 211 (289)
..+.... ..-..++..|+..|+.+++
T Consensus 174 d~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~via 207 (240)
T cd01948 174 DRSFVRDIETDPEDRAIVRAIIALAHSLGLKVVA 207 (240)
T ss_pred CHHHHHhHhcChhhHHHHHHHHHHHHHCCCeEEE
Confidence 5443321 1125688999999999887
No 317
>PF07027 DUF1318: Protein of unknown function (DUF1318); InterPro: IPR008309 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=20.36 E-value=2.4e+02 Score=20.50 Aligned_cols=30 Identities=23% Similarity=0.083 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHhCCCHHHHHHHHHH
Q 022968 247 EKNKLLYTRLETLAAKYGCTTPQLALAWLL 276 (289)
Q Consensus 247 ~~~~~~~~~l~~ia~~~g~s~~q~al~w~l 276 (289)
+.+..+.....+||++.|+|+.++.-.|.-
T Consensus 44 ~~N~~R~~~Y~~iA~~ng~t~~~V~~~~a~ 73 (95)
T PF07027_consen 44 AINADRRALYQEIAKKNGITVEQVAATAAQ 73 (95)
T ss_pred HHHHHHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 345666778999999999999998766543
No 318
>PRK05588 histidinol-phosphatase; Provisional
Probab=20.34 E-value=5.4e+02 Score=21.89 Aligned_cols=81 Identities=14% Similarity=0.190 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHHcCCCeEeCCcCcCC--CC--hhHHHHHHHHhc---CCCCCEEEEecccccccCCcccCCCCCHHHHHH
Q 022968 42 EVGCSIIKETFNRGITLFDTSDVYGV--DH--DNEIMVGKALKQ---LPRDKIQLATKFGCFMLDGVSIGVKGSPEYVRK 114 (289)
Q Consensus 42 ~~~~~~l~~A~~~Gi~~~DtA~~Yg~--~g--~se~~lg~~l~~---~~R~~~~I~tK~~~~~~~~~~~~~~~~~~~i~~ 114 (289)
....+.+++|.+.|+..+ .+++.-. +. .-...+-+.+++ .+..+|++.--++.. +. ...
T Consensus 16 ~~~ee~v~~A~~~Gl~~~-~TdH~~~~~~~~~~~~~~~~~y~~~i~~~~~~~I~~GiE~~~~------------~~-~~~ 81 (255)
T PRK05588 16 MKIEEAIKKAKENNLGII-ITEHMDLNLPDKNKFCFDVDSYFNKYSKYRNNKLLLGIELGME------------KD-LIE 81 (255)
T ss_pred cCHHHHHHHHHHcCCCEE-EeCCCCCCCCCccccccCHHHHHHHHHHHhcCCcceEEEeccc------------CC-CHH
Confidence 346789999999999998 6666311 00 000011122221 222344444433221 11 244
Q ss_pred HHHHHHHHcCCCcccEEeecCCC
Q 022968 115 CCEASLKRLDVDYIDLYYQHRVD 137 (289)
Q Consensus 115 ~~~~sL~~L~~~~iDl~~lh~~~ 137 (289)
.+++.|++...|++ +.-+|+.+
T Consensus 82 ~~~~~l~~~~~D~v-igSvH~~~ 103 (255)
T PRK05588 82 ENKELINKYEFDYV-IGSIHLVD 103 (255)
T ss_pred HHHHHHhhCCCCeE-EEeEEeeC
Confidence 55677777776666 67778753
No 319
>TIGR00737 nifR3_yhdG putative TIM-barrel protein, nifR3 family. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=20.11 E-value=6.2e+02 Score=22.46 Aligned_cols=133 Identities=12% Similarity=0.061 Sum_probs=76.5
Q ss_pred CHHHHHHHHHHHHHcCCCeEeCCc---------CcCCCCh----hHHHHHHHHhcC-CCCCEEEEecccccccCCcccCC
Q 022968 40 SHEVGCSIIKETFNRGITLFDTSD---------VYGVDHD----NEIMVGKALKQL-PRDKIQLATKFGCFMLDGVSIGV 105 (289)
Q Consensus 40 ~~~~~~~~l~~A~~~Gi~~~DtA~---------~Yg~~g~----se~~lg~~l~~~-~R~~~~I~tK~~~~~~~~~~~~~ 105 (289)
+.++..+..+.+.+.|+..+|.-- .|+ |. ..+.+.+.++.. .+-++-|+.|+......
T Consensus 73 ~~~~~~~aa~~~~~~G~d~IelN~gcP~~~~~~~~~--Gs~l~~~~~~~~ei~~~vr~~~~~pv~vKir~g~~~------ 144 (319)
T TIGR00737 73 DPDTMAEAAKINEELGADIIDINMGCPVPKITKKGA--GSALLRDPDLIGKIVKAVVDAVDIPVTVKIRIGWDD------ 144 (319)
T ss_pred CHHHHHHHHHHHHhCCCCEEEEECCCCHHHhcCCCc--cchHhCCHHHHHHHHHHHHhhcCCCEEEEEEcccCC------
Confidence 678888888888899999888521 222 22 234555555542 11235677776432211
Q ss_pred CCCHHHHHHHHHHHHHHcCCCcccEEeecCCCCCCC--HHHHHHHHHHHHHcCccceeecCCC-CHHHHHHHHccCCceE
Q 022968 106 KGSPEYVRKCCEASLKRLDVDYIDLYYQHRVDTSVS--IEDTMGELKKLVEEGKIKYIGLSEA-SADTIRRAHAVHPITA 182 (289)
Q Consensus 106 ~~~~~~i~~~~~~sL~~L~~~~iDl~~lh~~~~~~~--~~~~~~~l~~l~~~G~ir~iGvs~~-~~~~l~~~~~~~~~~~ 182 (289)
+...+ ..+-+.|+..|+ |.+.+|....... -...|+.+.++++.=.+--++.... +.+.+.++++....+.
T Consensus 145 --~~~~~-~~~a~~l~~~G~---d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~ipvi~nGgI~~~~da~~~l~~~gad~ 218 (319)
T TIGR00737 145 --AHINA-VEAARIAEDAGA---QAVTLHGRTRAQGYSGEANWDIIARVKQAVRIPVIGNGDIFSPEDAKAMLETTGCDG 218 (319)
T ss_pred --CcchH-HHHHHHHHHhCC---CEEEEEcccccccCCCchhHHHHHHHHHcCCCcEEEeCCCCCHHHHHHHHHhhCCCE
Confidence 11111 234455667775 5556775432111 1234777888887766777776654 5677777776566677
Q ss_pred Eecc
Q 022968 183 VQME 186 (289)
Q Consensus 183 ~q~~ 186 (289)
+++-
T Consensus 219 Vmig 222 (319)
T TIGR00737 219 VMIG 222 (319)
T ss_pred EEEC
Confidence 7664
No 320
>PRK15108 biotin synthase; Provisional
Probab=20.08 E-value=6.6e+02 Score=22.75 Aligned_cols=106 Identities=12% Similarity=0.139 Sum_probs=57.3
Q ss_pred CCHHHHHHHHHHHHHcCCCeEeCCcCc-CCCChhHHHHHHHHhcCCCCCEEEEecccccccCCcccCCCCCHHHHHHHHH
Q 022968 39 LSHEVGCSIIKETFNRGITLFDTSDVY-GVDHDNEIMVGKALKQLPRDKIQLATKFGCFMLDGVSIGVKGSPEYVRKCCE 117 (289)
Q Consensus 39 ~~~~~~~~~l~~A~~~Gi~~~DtA~~Y-g~~g~se~~lg~~l~~~~R~~~~I~tK~~~~~~~~~~~~~~~~~~~i~~~~~ 117 (289)
++.++..+..+.+.+.|++.|-..... +.....-+.+.+.++......+.++.-.|. .+.+.+
T Consensus 76 ls~eEI~~~a~~~~~~G~~~i~i~~~g~~p~~~~~e~i~~~i~~ik~~~i~v~~s~G~-----------ls~e~l----- 139 (345)
T PRK15108 76 MEVEQVLESARKAKAAGSTRFCMGAAWKNPHERDMPYLEQMVQGVKAMGLETCMTLGT-----------LSESQA----- 139 (345)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEEecCCCCCcchHHHHHHHHHHHHhCCCEEEEeCCc-----------CCHHHH-----
Confidence 678889999998889999988543221 110112244555555432223333322221 232222
Q ss_pred HHHHHcCCCcccEEeecCC------CCCCCHHHHHHHHHHHHHcCccce
Q 022968 118 ASLKRLDVDYIDLYYQHRV------DTSVSIEDTMGELKKLVEEGKIKY 160 (289)
Q Consensus 118 ~sL~~L~~~~iDl~~lh~~------~~~~~~~~~~~~l~~l~~~G~ir~ 160 (289)
+-|+..|+|++.+-+=-.| -.....++.++.++.+++.|.--.
T Consensus 140 ~~LkeAGld~~n~~leT~p~~f~~I~~~~~~~~rl~~i~~a~~~G~~v~ 188 (345)
T PRK15108 140 QRLANAGLDYYNHNLDTSPEFYGNIITTRTYQERLDTLEKVRDAGIKVC 188 (345)
T ss_pred HHHHHcCCCEEeeccccChHhcCCCCCCCCHHHHHHHHHHHHHcCCcee
Confidence 3455667665433211111 012357788999999999997433
No 321
>COG0502 BioB Biotin synthase and related enzymes [Coenzyme metabolism]
Probab=20.02 E-value=6.3e+02 Score=22.98 Aligned_cols=101 Identities=19% Similarity=0.185 Sum_probs=62.7
Q ss_pred CCHHHHHHHHHHHHHcC-CCeEeCCcCcCCCChhHHHHHHHHhcCC-CCCEEEEecccccccCCcccCCCCCHHHHHHHH
Q 022968 39 LSHEVGCSIIKETFNRG-ITLFDTSDVYGVDHDNEIMVGKALKQLP-RDKIQLATKFGCFMLDGVSIGVKGSPEYVRKCC 116 (289)
Q Consensus 39 ~~~~~~~~~l~~A~~~G-i~~~DtA~~Yg~~g~se~~lg~~l~~~~-R~~~~I~tK~~~~~~~~~~~~~~~~~~~i~~~~ 116 (289)
++.++..+.-+.|-+.| .+|...|..++. +..-..+-++++... --.+-+..-+|. .+.++
T Consensus 84 ~~~eeIle~Ak~ak~~Ga~r~c~~aagr~~-~~~~~~i~~~v~~Vk~~~~le~c~slG~-----------l~~eq----- 146 (335)
T COG0502 84 MEVEEILEAAKKAKAAGATRFCMGAAGRGP-GRDMEEVVEAIKAVKEELGLEVCASLGM-----------LTEEQ----- 146 (335)
T ss_pred CCHHHHHHHHHHHHHcCCceEEEEEeccCC-CccHHHHHHHHHHHHHhcCcHHhhccCC-----------CCHHH-----
Confidence 56777888888888999 888888888863 444555555655411 122333433331 23333
Q ss_pred HHHHHHcCCCcccEEeecCCCC----------CCCHHHHHHHHHHHHHcCccce
Q 022968 117 EASLKRLDVDYIDLYYQHRVDT----------SVSIEDTMGELKKLVEEGKIKY 160 (289)
Q Consensus 117 ~~sL~~L~~~~iDl~~lh~~~~----------~~~~~~~~~~l~~l~~~G~ir~ 160 (289)
-+-|+.-|+++. -|+-+. ...+++-++.++.+++.|.=-.
T Consensus 147 ~~~L~~aGvd~y----nhNLeTs~~~y~~I~tt~t~edR~~tl~~vk~~Gi~vc 196 (335)
T COG0502 147 AEKLADAGVDRY----NHNLETSPEFYENIITTRTYEDRLNTLENVREAGIEVC 196 (335)
T ss_pred HHHHHHcChhhe----ecccccCHHHHcccCCCCCHHHHHHHHHHHHHcCCccc
Confidence 245666777653 564432 3457888999999999987433
Done!