BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 022969
         (289 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|P44225|VG29_HAEIN Mu-like prophage FluMu protein gp29 OS=Haemophilus influenzae
           (strain ATCC 51907 / DSM 11121 / KW20 / Rd) GN=HI_1501
           PE=4 SV=1
          Length = 520

 Score = 35.4 bits (80), Expect = 0.48,   Method: Compositional matrix adjust.
 Identities = 15/48 (31%), Positives = 22/48 (45%), Gaps = 2/48 (4%)

Query: 209 HWQSPVWLVTPVVYESYRVLQLMRGLKLGAELSAPAWIVHTVRGLVCW 256
           HW+ P W +TP    +   L+L  G   GAE+    W+ H  R    +
Sbjct: 158 HWRDPAWFMTPAYQRN--SLRLRDGTPEGAEMQQFGWVKHVARAKTGY 203


>sp|Q9Z1S0|BUB1B_MOUSE Mitotic checkpoint serine/threonine-protein kinase BUB1 beta OS=Mus
           musculus GN=Bub1b PE=1 SV=2
          Length = 1052

 Score = 32.3 bits (72), Expect = 3.6,   Method: Composition-based stats.
 Identities = 22/70 (31%), Positives = 34/70 (48%), Gaps = 4/70 (5%)

Query: 47  PLCCT----KLTPWEPSPASHAPTDDADYKILNKNSNIFETLSSDNTAEAPATKTEEVTD 102
           PL C+       P E SPA +   +  D K  +   +IF+   SD   ++PAT   +V +
Sbjct: 486 PLSCSICPLSSNPREISPAENILQEQPDSKGSSMPFSIFDESLSDKKDKSPATGGPQVLN 545

Query: 103 ANNQPLVQLQ 112
           A  +PL  L+
Sbjct: 546 AQRRPLSVLK 555


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.322    0.134    0.438 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 106,789,848
Number of Sequences: 539616
Number of extensions: 4388294
Number of successful extensions: 8687
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 8676
Number of HSP's gapped (non-prelim): 15
length of query: 289
length of database: 191,569,459
effective HSP length: 116
effective length of query: 173
effective length of database: 128,974,003
effective search space: 22312502519
effective search space used: 22312502519
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 61 (28.1 bits)