Query 022969
Match_columns 289
No_of_seqs 29 out of 31
Neff 2.5
Searched_HMMs 46136
Date Fri Mar 29 07:29:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022969.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/022969hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3966 p53-mediated apoptosis 30.8 1.1E+02 0.0025 30.3 5.6 70 132-207 70-161 (360)
2 PF11014 DUF2852: Protein of u 28.6 65 0.0014 27.5 3.2 28 236-263 2-29 (115)
3 COG3402 Uncharacterized conser 23.0 1.4E+02 0.0029 27.1 4.3 42 151-192 18-59 (161)
4 smart00730 PSN Presenilin, sig 22.7 69 0.0015 29.5 2.5 47 147-196 199-245 (249)
5 PF07850 Renin_r: Renin recept 14.5 57 0.0012 27.1 0.0 42 129-170 34-77 (98)
6 PF13691 Lactamase_B_4: tRNase 14.0 95 0.0021 23.6 1.1 10 122-131 12-21 (63)
7 PF11994 DUF3489: Protein of u 12.7 58 0.0013 25.8 -0.4 27 229-255 20-46 (72)
8 PLN02434 fatty acid hydroxylas 12.5 2.1E+02 0.0045 26.8 3.1 50 204-259 48-97 (237)
9 PF10953 DUF2754: Protein of u 11.5 1.6E+02 0.0034 23.4 1.6 26 251-285 43-68 (70)
10 KOG2181 LIM domain binding pro 11.2 1.4E+02 0.0031 30.1 1.6 21 223-243 50-70 (415)
No 1
>KOG3966 consensus p53-mediated apoptosis protein EI24/PIG8 [Signal transduction mechanisms; Defense mechanisms]
Probab=30.77 E-value=1.1e+02 Score=30.33 Aligned_cols=70 Identities=31% Similarity=0.532 Sum_probs=45.6
Q ss_pred CccccccccccCCCCCCc---e--eehhhHHHHHhhH------HHHHHHh-----------hcccCCCCCCCCchhhHHH
Q 022969 132 CARSKNTTRACNSKPPFS---Y--KFWNMVANTTGFI------IPLLMLF-----------GSQKGFLQPQLPFIPFAVL 189 (289)
Q Consensus 132 ~~Rp~~~~~~~~s~~P~~---y--k~W~~~~~ilG~v------iPlv~m~-----------g~w~G~~qP~lpf~~~~v~ 189 (289)
-+||+++++--...+|.- | ..||+-+.=+|++ ||.+-++ ++-|||++| +...
T Consensus 70 ~rrp~~~~~k~~~Ep~i~k~~F~cc~wngg~~w~s~llf~~v~ipiL~~~~s~f~g~~s~h~~vw~wl~~------~ls~ 143 (360)
T KOG3966|consen 70 MRRPKQGIFKRPPEPPIKKDSFLCCLWNGGAMWISFLLFWQVCIPILGLFFSFFDGTDSGHNVVWGWLHP------ILSL 143 (360)
T ss_pred hcCcccccccCCCCCchHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHheeccCCccccchHhhhhH------HHHH
Confidence 478888888766666632 2 3366666666654 5655443 244699999 6777
Q ss_pred HHHHHHHHHHHHHHhHhh
Q 022969 190 LGPYLLLLSIQILTEMLT 207 (289)
Q Consensus 190 L~PYLllL~VQiltE~lt 207 (289)
|.-|+..|-+=+++.+..
T Consensus 144 lfg~iwVlPiF~lSkiV~ 161 (360)
T KOG3966|consen 144 LFGYIWVLPIFFLSKIVQ 161 (360)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 777777776666666553
No 2
>PF11014 DUF2852: Protein of unknown function (DUF2852); InterPro: IPR021273 This bacterial family of proteins has no known function.
Probab=28.65 E-value=65 Score=27.52 Aligned_cols=28 Identities=32% Similarity=0.584 Sum_probs=23.6
Q ss_pred hccccchhHHHHHHhhhhHHHHHHHHHH
Q 022969 236 LGAELSAPAWIVHTVRGLVCWWILILGV 263 (289)
Q Consensus 236 L~~~lsap~Wv~~~irGlV~wWvLilg~ 263 (289)
++++-.-|+|+.-|+-|.|.||-|-|.+
T Consensus 2 ~l~~~~~~a~Ia~mVlGFi~fWPlGla~ 29 (115)
T PF11014_consen 2 WLDPRWKPAWIAAMVLGFIVFWPLGLAL 29 (115)
T ss_pred CcCCCCchHHHHHHHHHHHHHHHHHHHH
Confidence 3567788999999999999999985554
No 3
>COG3402 Uncharacterized conserved protein [Function unknown]
Probab=22.98 E-value=1.4e+02 Score=27.11 Aligned_cols=42 Identities=7% Similarity=-0.072 Sum_probs=30.9
Q ss_pred eehhhHHHHHhhHHHHHHHhhcccCCCCCCCCchhhHHHHHH
Q 022969 151 KFWNMVANTTGFIIPLLMLFGSQKGFLQPQLPFIPFAVLLGP 192 (289)
Q Consensus 151 k~W~~~~~ilG~viPlv~m~g~w~G~~qP~lpf~~~~v~L~P 192 (289)
+.|..+...+++++|...+.+.+.=..+|.-|+.++.++.+=
T Consensus 18 ~~~~~i~~~l~Ll~av~~~~~~~~~~~~~~w~~~a~~av~l~ 59 (161)
T COG3402 18 RVQEWIPIALVLLIAVAAGVLLYFVGLDPNWSSVAAVAVILL 59 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHheeccCCccHHHHHHHHHHH
Confidence 455888999999999999887666666777666666655543
No 4
>smart00730 PSN Presenilin, signal peptide peptidase, family. Presenilin 1 and presenilin 2 are polytopic membrane proteins, whose genes are mutated in some individuals with Alzheimer's disease. Distant homologues, present in eukaryotes and archaea, also contain conserved aspartic acid residues which are predicted to contribute to catalysis. At least one member of this family has been shown to possess signal peptide peptidase activity.
Probab=22.70 E-value=69 Score=29.48 Aligned_cols=47 Identities=34% Similarity=0.463 Sum_probs=34.7
Q ss_pred CCceeehhhHHHHHhhHHHHHHHhhcccCCCCCCCCchhhHHHHHHHHHH
Q 022969 147 PFSYKFWNMVANTTGFIIPLLMLFGSQKGFLQPQLPFIPFAVLLGPYLLL 196 (289)
Q Consensus 147 P~~yk~W~~~~~ilG~viPlv~m~g~w~G~~qP~lpf~~~~v~L~PYLll 196 (289)
+..|-...+++-++|+++-++++....+ =||.||++ +..++++|++.
T Consensus 199 ~~~yf~~~~~ay~~GL~~t~~~l~~~~~--aqPALlyl-vp~~l~~~~~~ 245 (249)
T smart00730 199 DSNYFLACFVAYGIGLILTLVLLALFKK--AQPALPYL-VPFTLVFYLLT 245 (249)
T ss_pred CcccHHHHHHHHHHHHHHHHHHHHHhCC--CCccHHHH-HHHHHHHHHHH
Confidence 3557777888999999999988887664 57988876 44556666653
No 5
>PF07850 Renin_r: Renin receptor-like protein; InterPro: IPR012493 The sequences featured in this family are similar to a region of the human renin receptor (Q8NG15 from SWISSPROT) that bears a putative transmembrane spanning segment []. The renin receptor is involved in intracellular signal transduction by the activation of the ERK1/ERK2 pathway, and it also serves to increase the efficiency of angiotensinogen cleavage by receptor-bound renin, therefore facilitating angiotensin II generation and action on a cell surface []. ; GO: 0004872 receptor activity, 0016021 integral to membrane; PDB: 3LC8_A 3LBS_A.
Probab=14.47 E-value=57 Score=27.11 Aligned_cols=42 Identities=12% Similarity=0.290 Sum_probs=0.0
Q ss_pred cccCccccccccccCCCCCCceee--hhhHHHHHhhHHHHHHHh
Q 022969 129 TDSCARSKNTTRACNSKPPFSYKF--WNMVANTTGFIIPLLMLF 170 (289)
Q Consensus 129 tD~~~Rp~~~~~~~~s~~P~~yk~--W~~~~~ilG~viPlv~m~ 170 (289)
.|...-+.|....-++..|--|++ |+++..++.++.-+..|.
T Consensus 34 ~~~~~~~~n~a~~~~~dypviFnIiLW~~v~l~~all~i~~~m~ 77 (98)
T PF07850_consen 34 EKNSRKPYNVAQPYSSDYPVIFNIILWFSVVLALALLAICYAMW 77 (98)
T ss_dssp --------------------------------------------
T ss_pred ccccCCccccccccCCCchHHHHHHHHHHHHHHHHHHHHHHHhe
Confidence 444455555555556667755544 887777666665555544
No 6
>PF13691 Lactamase_B_4: tRNase Z endonuclease
Probab=13.96 E-value=95 Score=23.59 Aligned_cols=10 Identities=60% Similarity=0.820 Sum_probs=8.9
Q ss_pred cceeeeeccc
Q 022969 122 GPCILLGTDS 131 (289)
Q Consensus 122 gps~ll~tD~ 131 (289)
||+|+|.+|.
T Consensus 12 ~p~l~l~~d~ 21 (63)
T PF13691_consen 12 GPSLLLFFDS 21 (63)
T ss_pred CCEEEEEeCC
Confidence 6999999996
No 7
>PF11994 DUF3489: Protein of unknown function (DUF3489); InterPro: IPR021880 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 84 to 211 amino acids in length. This protein has a single completely conserved residue W that may be functionally important.
Probab=12.69 E-value=58 Score=25.79 Aligned_cols=27 Identities=30% Similarity=0.489 Sum_probs=21.3
Q ss_pred HHHhhhhhccccchhHHHHHHhhhhHH
Q 022969 229 QLMRGLKLGAELSAPAWIVHTVRGLVC 255 (289)
Q Consensus 229 QL~RglqL~~~lsap~Wv~~~irGlV~ 255 (289)
+==+|+.+.+--.+..|--|++||-++
T Consensus 20 ~rp~GATi~ei~~atGWq~HTvRgals 46 (72)
T PF11994_consen 20 RRPEGATIAEICEATGWQPHTVRGALS 46 (72)
T ss_pred cCCCCCCHHHHHHhhCCchhhHHHHHH
Confidence 334577777777889999999999764
No 8
>PLN02434 fatty acid hydroxylase
Probab=12.52 E-value=2.1e+02 Score=26.82 Aligned_cols=50 Identities=26% Similarity=0.587 Sum_probs=30.3
Q ss_pred hHhhhhccCceeeeeeeeehhhHHHHHHhhhhhccccchhHHHHHHhhhhHHHHHH
Q 022969 204 EMLTWHWQSPVWLVTPVVYESYRVLQLMRGLKLGAELSAPAWIVHTVRGLVCWWIL 259 (289)
Q Consensus 204 E~lt~~wkSPVWlvvPvIYe~YRl~QL~RglqL~~~lsap~Wv~~~irGlV~wWvL 259 (289)
|.+| .-.|-++|+|+-+-=+.=+++|++.+ .+...++.-.+-|++.|..+
T Consensus 48 E~ls----rt~w~vvp~iw~pvv~~~~~~~~~~~--~~~~~~~~~~~~G~~~wtl~ 97 (237)
T PLN02434 48 EFLT----RTVWWAVPLIWLPVVCWCLVKSVRMG--LPLSAVVLMVAFGVFIWTLL 97 (237)
T ss_pred HHhc----CCchhhhHHHHHHHHHHHHHHHHhcC--CcHHHHHHHHHHHHHHHHHH
Confidence 6666 34566777776665555556666533 23334556667788888765
No 9
>PF10953 DUF2754: Protein of unknown function (DUF2754); InterPro: IPR020490 This entry contains membrane proteins with no known function.
Probab=11.47 E-value=1.6e+02 Score=23.37 Aligned_cols=26 Identities=42% Similarity=0.788 Sum_probs=18.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHhhccchhhhccCCCC
Q 022969 251 RGLVCWWILILGVQLMRVAWFAGFTSQARRQQSPA 285 (289)
Q Consensus 251 rGlV~wWvLilg~qLMrvawfag~~~~~~~~~~~~ 285 (289)
-|||.|=+- -|.|||--|.|+....+
T Consensus 43 vglvtwvis---------fwlag~iirrr~~e~~~ 68 (70)
T PF10953_consen 43 VGLVTWVIS---------FWLAGFIIRRRPEEVEA 68 (70)
T ss_pred ehhHHHHHH---------HHHhhheeeeccccccc
Confidence 478877443 59999999988765543
No 10
>KOG2181 consensus LIM domain binding protein LDB1/NLI/CLIM [Transcription]
Probab=11.23 E-value=1.4e+02 Score=30.08 Aligned_cols=21 Identities=19% Similarity=0.366 Sum_probs=19.0
Q ss_pred hhhHHHHHHhhhhhccccchh
Q 022969 223 ESYRVLQLMRGLKLGAELSAP 243 (289)
Q Consensus 223 e~YRl~QL~RglqL~~~lsap 243 (289)
.-||+|-+||-||.-.|.++-
T Consensus 50 ~e~Ri~emNkRLq~~se~sdN 70 (415)
T KOG2181|consen 50 LEFRIHEMNKRLQIFSEVSDN 70 (415)
T ss_pred chhhHHHHHHHHHHhcccchh
Confidence 369999999999999999886
Done!