Query 022969
Match_columns 289
No_of_seqs 29 out of 31
Neff 2.5
Searched_HMMs 29240
Date Mon Mar 25 14:09:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022969.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/022969hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2l8s_A Integrin alpha-1; trans 22.5 37 0.0013 24.6 1.6 19 267-285 28-46 (54)
2 2knc_A Integrin alpha-IIB; tra 18.3 60 0.0021 23.4 2.0 16 268-283 32-47 (54)
3 2wur_A Green fluorescent prote 10.5 65 0.0022 29.2 0.4 40 33-77 123-163 (236)
4 2k1a_A Integrin alpha-IIB; sin 9.1 1.6E+02 0.0054 20.1 1.8 12 268-279 30-41 (42)
5 3ai5_A Yeast enhanced green fl 8.6 86 0.0029 28.7 0.4 30 33-67 126-156 (307)
6 3cjl_A Domain of unknown funct 7.6 2.9E+02 0.0098 21.5 2.9 33 196-235 52-86 (88)
7 4grv_A Neurotensin receptor ty 5.7 1.8E+02 0.0062 26.0 1.0 25 149-173 201-225 (510)
8 3ai4_A Yeast enhanced green fl 5.3 2.1E+02 0.0071 26.7 1.2 27 33-64 126-153 (283)
9 1jb0_I Photosystem 1 reaction 5.1 4E+02 0.014 18.1 2.1 18 154-171 12-29 (38)
10 4atg_A TAF6; transcription, TF 4.9 4.6E+02 0.016 22.4 3.1 19 189-211 40-58 (196)
No 1
>2l8s_A Integrin alpha-1; transmembrane region, detergent micelle, CE adhesion; NMR {Homo sapiens}
Probab=22.52 E-value=37 Score=24.62 Aligned_cols=19 Identities=16% Similarity=0.375 Sum_probs=14.4
Q ss_pred HHHHhhccchhhhccCCCC
Q 022969 267 RVAWFAGFTSQARRQQSPA 285 (289)
Q Consensus 267 rvawfag~~~~~~~~~~~~ 285 (289)
=+-|-+||-.|.++++...
T Consensus 28 ~~LwK~GFFKR~~~~~~~~ 46 (54)
T 2l8s_A 28 LALWKIGFFKRPLKKKMEK 46 (54)
T ss_dssp HHHHHHHHTTSCCSCCCCC
T ss_pred HHHHHcCcccCCCcchhhH
Confidence 3558899999999876554
No 2
>2knc_A Integrin alpha-IIB; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=18.31 E-value=60 Score=23.38 Aligned_cols=16 Identities=25% Similarity=0.528 Sum_probs=12.4
Q ss_pred HHHhhccchhhhccCC
Q 022969 268 VAWFAGFTSQARRQQS 283 (289)
Q Consensus 268 vawfag~~~~~~~~~~ 283 (289)
+-|-+||-.|.++.+.
T Consensus 32 ~LwK~GFFkR~~~~~~ 47 (54)
T 2knc_A 32 AMWKVGFFKRNRPPLE 47 (54)
T ss_dssp HHHHHHHTTTTCCSCC
T ss_pred HHHHcCcccCCCCCcc
Confidence 4588899999887654
No 3
>2wur_A Green fluorescent protein; chromophore, beta-barrel, luminescence, photoprotein, bioluminescence; HET: CSY IPA EOH; 0.90A {Aequorea victoria} PDB: 1emk_A* 1eme_A* 1emc_A* 1eml_A* 1s6z_A* 1z1p_A* 1z1q_A* 1q4a_A* 1c4f_A* 1emb_A* 1emg_A* 1ema_A* 1hcj_A* 1q4b_A* 1w7s_A* 1w7t_A* 1w7u_A* 2emd_A* 1emm_A* 2emn_A* ...
Probab=10.48 E-value=65 Score=29.22 Aligned_cols=40 Identities=10% Similarity=0.030 Sum_probs=28.7
Q ss_pred ccccccccceecCceeecccCCCCCCCC-CCCCcCCcccccccccc
Q 022969 33 IPVVTSPCTHVKHSPLCCTKLTPWEPSP-ASHAPTDDADYKILNKN 77 (289)
Q Consensus 33 ~~~~~fP~~~~~~~~~~ctk~~~we~s~-~~ya~~~~~~~~~l~~~ 77 (289)
.++..|| .+.++.--|.+ ||||. -.|...|+..+-+|++-
T Consensus 123 f~GvnFP----~dGPVMqkkt~-weps~e~~~~~~d~~~dGvl~g~ 163 (236)
T 2wur_A 123 LKGIDFK----EDGNILGHKLE-YNYNSHNVYIMADKQKNGIKVNF 163 (236)
T ss_dssp EEEECCC----TTSTTTTTCBC-SCCCCCEEEEEEEGGGTEEEEEE
T ss_pred EEEECCC----CCCCcccccee-ecCCcceEEEcccCCCCCeEEee
Confidence 5677888 57888777888 99997 45666666555666653
No 4
>2k1a_A Integrin alpha-IIB; single-PASS transmembrane segment, alternative splicing, calcium, cell adhesion, cleavage on PAIR of basic residues; NMR {Homo sapiens} PDB: 2k9j_A
Probab=9.09 E-value=1.6e+02 Score=20.12 Aligned_cols=12 Identities=33% Similarity=0.772 Sum_probs=8.9
Q ss_pred HHHhhccchhhh
Q 022969 268 VAWFAGFTSQAR 279 (289)
Q Consensus 268 vawfag~~~~~~ 279 (289)
+-|-+||-.|.+
T Consensus 30 ~LwK~GFFkR~~ 41 (42)
T 2k1a_A 30 AMWKVGFFKRNR 41 (42)
T ss_dssp HHHHTTTTCCCC
T ss_pred HHHHcCcccCCC
Confidence 458888887765
No 5
>3ai5_A Yeast enhanced green fluorescent protein, ubiquit; ubiquitin, fusion protein, fluore protein, transcription; HET: CR2; 1.40A {Aequorea victoria} PDB: 3ako_B*
Probab=8.62 E-value=86 Score=28.72 Aligned_cols=30 Identities=10% Similarity=0.087 Sum_probs=21.6
Q ss_pred ccccccccceecCceeecccCCCCCCCC-CCCCcCC
Q 022969 33 IPVVTSPCTHVKHSPLCCTKLTPWEPSP-ASHAPTD 67 (289)
Q Consensus 33 ~~~~~fP~~~~~~~~~~ctk~~~we~s~-~~ya~~~ 67 (289)
.++..|| .+.++.--|.+ ||||. -.|...|
T Consensus 126 ~~g~~fp----~~gpvm~~~~~-~~~~~~~~~~~~D 156 (307)
T 3ai5_A 126 LKGIDFK----EDGNILGHKLE-YNYNSHNVYIMAD 156 (307)
T ss_dssp EEEECCC----TTSTTTTTCBC-SCCCCEEEEEEEE
T ss_pred EEEECCC----CCCCcccccee-ecCCcceEEEccc
Confidence 5677788 57888777888 99998 3455333
No 6
>3cjl_A Domain of unknown function; structural genomics, joint center for structural genomics, J protein structure initiative; 2.20A {Pectobacterium atrosepticum SCRI1043}
Probab=7.64 E-value=2.9e+02 Score=21.46 Aligned_cols=33 Identities=15% Similarity=0.499 Sum_probs=25.2
Q ss_pred HHHHHHHHhHhhhhccCceeeeeeeeehhhH--HHHHHhhhh
Q 022969 196 LLSIQILTEMLTWHWQSPVWLVTPVVYESYR--VLQLMRGLK 235 (289)
Q Consensus 196 lL~VQiltE~lt~~wkSPVWlvvPvIYe~YR--l~QL~Rglq 235 (289)
.+|++.++|....|++.| .|...| +-|.|..||
T Consensus 52 ~vGLKLfgevml~~r~~p-------LF~~~~p~f~~Fm~~LK 86 (88)
T 3cjl_A 52 MVGLKLFGEVMMQQRKHP-------LFKEFSAPFRAFMMNLK 86 (88)
T ss_dssp HHHHHHHHHHHHHTTTSH-------HHHTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcCCc-------cHHHHHHHHHHHHHHHh
Confidence 578999999999999998 555555 446666655
No 7
>4grv_A Neurotensin receptor type 1, lysozyme chimera; G-protein coupled receptor, G-protein, signaling protein-agonist complex; HET: EPE; 2.80A {Rattus norvegicus}
Probab=5.74 E-value=1.8e+02 Score=26.05 Aligned_cols=25 Identities=20% Similarity=0.260 Sum_probs=18.7
Q ss_pred ceeehhhHHHHHhhHHHHHHHhhcc
Q 022969 149 SYKFWNMVANTTGFIIPLLMLFGSQ 173 (289)
Q Consensus 149 ~yk~W~~~~~ilG~viPlv~m~g~w 173 (289)
.++....+..+++|++|+++|...+
T Consensus 201 ~~~~~~~~~~~~~f~iP~~ii~~~Y 225 (510)
T 4grv_A 201 TVKVVIQVNTFMSFLFPMLVISILN 225 (510)
T ss_dssp HHHHHHHHHHHHHTHHHHHHHHHHH
T ss_pred hhhhhhhhhhhHHHhhhHHHHHHHH
Confidence 4455677778899999999887543
No 8
>3ai4_A Yeast enhanced green fluorescent protein, DNA POL IOTA; UBM, ubiquitin-binding motif, GFP, fusion, fluorescent prote replication; HET: CR2; 1.60A {Aequorea victoria} PDB: 2kwu_A* 2ktf_B* 2l0g_A*
Probab=5.32 E-value=2.1e+02 Score=26.66 Aligned_cols=27 Identities=7% Similarity=0.060 Sum_probs=20.5
Q ss_pred ccccccccceecCceeecccCCCCCCCC-CCCC
Q 022969 33 IPVVTSPCTHVKHSPLCCTKLTPWEPSP-ASHA 64 (289)
Q Consensus 33 ~~~~~fP~~~~~~~~~~ctk~~~we~s~-~~ya 64 (289)
.++.+|| .+.++.--|.+ ||||+ -.|.
T Consensus 126 f~GvnFP----~dGPVMqkkt~-weps~Ek~y~ 153 (283)
T 3ai4_A 126 LKGIDFK----EDGNILGHKLE-YNYNSHNVYI 153 (283)
T ss_dssp EEEECCC----TTSTTTTTCBC-SCCCCEEEEE
T ss_pred EEEECCC----CCCCcccccee-ecCCcceEEE
Confidence 5677888 57888877878 99998 3444
No 9
>1jb0_I Photosystem 1 reaction centre subunit VIII; membrane protein, multiprotein-pigment complex, photosynthes; HET: CL1 PQN BCR LHG LMG; 2.50A {Synechococcus elongatus} SCOP: f.23.17.1 PDB: 3pcq_I*
Probab=5.08 E-value=4e+02 Score=18.11 Aligned_cols=18 Identities=6% Similarity=0.134 Sum_probs=12.7
Q ss_pred hhHHHHHhhHHHHHHHhh
Q 022969 154 NMVANTTGFIIPLLMLFG 171 (289)
Q Consensus 154 ~~~~~ilG~viPlv~m~g 171 (289)
.+.+-++|++.|.++|..
T Consensus 12 sI~VPlVglvfPai~Mal 29 (38)
T 1jb0_I 12 WIFIPVVCWLMPTVVMGL 29 (38)
T ss_dssp HHHHHHHHTHHHHHHHHH
T ss_pred hhhHhHHHHHHHHHHHHH
Confidence 455667788888877763
No 10
>4atg_A TAF6; transcription, TFIID; HET: NHE; 1.89A {Antonospora locustae}
Probab=4.94 E-value=4.6e+02 Score=22.44 Aligned_cols=19 Identities=26% Similarity=0.587 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHhHhhhhcc
Q 022969 189 LLGPYLLLLSIQILTEMLTWHWQ 211 (289)
Q Consensus 189 ~L~PYLllL~VQiltE~lt~~wk 211 (289)
-|.|||+ ||..|.++.+-+
T Consensus 40 ~LlPyf~----~fI~~~v~~nl~ 58 (196)
T 4atg_A 40 QLVPYFI----QHISELILKSFK 58 (196)
T ss_dssp TTHHHHH----HHHHHHHHHCTT
T ss_pred hhHHHHH----HHHHHHHHhccC
Confidence 3789985 777777776655
Done!