Query 022969
Match_columns 289
No_of_seqs 29 out of 31
Neff 2.5
Searched_HMMs 13730
Date Mon Mar 25 14:09:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022969.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/022969hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2j0sa2 c.37.1.19 (A:244-411) 7.5 70 0.0051 23.7 1.3 16 123-138 85-100 (168)
2 d1fuka_ c.37.1.19 (A:) Initiat 6.3 82 0.006 23.0 1.2 18 123-140 78-95 (162)
3 d1lsha2 f.7.1.1 (A:17-284) Lip 5.3 1.2E+02 0.0085 23.8 1.6 21 235-255 96-116 (268)
4 d1nekc_ f.21.2.2 (C:) Succinat 5.1 1.1E+02 0.0077 22.1 1.1 15 104-118 7-22 (129)
5 d1jr6a_ c.37.1.14 (A:) HCV hel 5.1 1.5E+02 0.011 21.4 1.9 17 123-139 79-95 (138)
6 d1gmua2 d.58.38.1 (A:71-138) U 4.3 1.5E+02 0.011 20.1 1.3 11 263-273 13-23 (68)
7 d1ooaa2 b.2.5.3 (A:38-250) p50 4.0 2.9E+02 0.021 22.4 3.2 27 33-59 37-70 (213)
8 d2olua2 e.3.1.1 (A:293-692) Pe 3.7 51 0.0037 27.7 -2.1 10 267-276 313-322 (400)
9 d1s2ma2 c.37.1.19 (A:252-422) 3.5 2E+02 0.015 20.7 1.6 28 123-150 83-113 (171)
10 d1oedc_ f.36.1.1 (C:) Acetylch 3.5 4.4E+02 0.032 19.4 3.7 78 151-257 32-113 (260)
No 1
>d2j0sa2 c.37.1.19 (A:244-411) Probable ATP-dependent RNA helicase DDX48 {Human (Homo sapiens) [TaxId: 9606]}
Probab=7.46 E-value=70 Score=23.66 Aligned_cols=16 Identities=31% Similarity=0.445 Sum_probs=13.5
Q ss_pred ceeeeecccCcccccc
Q 022969 123 PCILLGTDSCARSKNT 138 (289)
Q Consensus 123 ps~ll~tD~~~Rp~~~ 138 (289)
-.+|++||.++|..+.
T Consensus 85 ~~iLv~Td~~~rGiDi 100 (168)
T d2j0sa2 85 SRVLISTDVWARGLDV 100 (168)
T ss_dssp SCEEEECGGGSSSCCC
T ss_pred ccEEeccchhcccccc
Confidence 3589999999998774
No 2
>d1fuka_ c.37.1.19 (A:) Initiation factor 4a {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=6.34 E-value=82 Score=23.01 Aligned_cols=18 Identities=33% Similarity=0.410 Sum_probs=14.5
Q ss_pred ceeeeecccCcccccccc
Q 022969 123 PCILLGTDSCARSKNTTR 140 (289)
Q Consensus 123 ps~ll~tD~~~Rp~~~~~ 140 (289)
..+|++||..+|.-+...
T Consensus 78 ~~iLv~Tdv~~rGiDi~~ 95 (162)
T d1fuka_ 78 SRILISTDLLARGIDVQQ 95 (162)
T ss_dssp CSEEEEEGGGTTTCCCCS
T ss_pred cceeeccccccccccCCC
Confidence 459999999999887543
No 3
>d1lsha2 f.7.1.1 (A:17-284) Lipovitellin-phosvitin complex; beta-sheet shell regions {Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]}
Probab=5.29 E-value=1.2e+02 Score=23.78 Aligned_cols=21 Identities=24% Similarity=0.259 Sum_probs=17.7
Q ss_pred hhccccchhHHHHHHhhhhHH
Q 022969 235 KLGAELSAPAWIVHTVRGLVC 255 (289)
Q Consensus 235 qL~~~lsap~Wv~~~irGlV~ 255 (289)
.+-.+..+|.|++.+.||+++
T Consensus 96 ~i~~~~~e~~~~lNiKrgI~S 116 (268)
T d1lsha2 96 DIYAPPQVTDTAVNIVRGILN 116 (268)
T ss_dssp EEECCTTSCHHHHHHHHHHHH
T ss_pred EEEcCCCCChHHHHHHHHHHH
Confidence 566788899999999999886
No 4
>d1nekc_ f.21.2.2 (C:) Succinate dehydrogenase subunit SdhC {Escherichia coli [TaxId: 562]}
Probab=5.11 E-value=1.1e+02 Score=22.10 Aligned_cols=15 Identities=27% Similarity=0.755 Sum_probs=8.9
Q ss_pred cCcc-ccccccccchh
Q 022969 104 NNQP-LVQLQFLKWPM 118 (289)
Q Consensus 104 ~~~p-~~q~q~~kwp~ 118 (289)
+||| +..+|..|||+
T Consensus 7 ~~RP~sPhL~iyk~~~ 22 (129)
T d1nekc_ 7 KQRPVNLDLQTIRFPI 22 (129)
T ss_dssp CCCCBCCCGGGSCCCH
T ss_pred cCCCCCCCcceeCchH
Confidence 4555 55666666665
No 5
>d1jr6a_ c.37.1.14 (A:) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]}
Probab=5.07 E-value=1.5e+02 Score=21.43 Aligned_cols=17 Identities=12% Similarity=0.176 Sum_probs=13.8
Q ss_pred ceeeeecccCccccccc
Q 022969 123 PCILLGTDSCARSKNTT 139 (289)
Q Consensus 123 ps~ll~tD~~~Rp~~~~ 139 (289)
..+|++||..+|..+++
T Consensus 79 ~~vlvaTd~~~~GiD~~ 95 (138)
T d1jr6a_ 79 DVVVVATDALMTGFTGD 95 (138)
T ss_dssp CEEEEESSSSCSSSCCC
T ss_pred cceeehhHHHHhccccc
Confidence 45799999999998643
No 6
>d1gmua2 d.58.38.1 (A:71-138) Urease metallochaperone UreE, C-terminal domain {Klebsiella aerogenes [TaxId: 28451]}
Probab=4.34 E-value=1.5e+02 Score=20.09 Aligned_cols=11 Identities=18% Similarity=0.392 Sum_probs=9.0
Q ss_pred HHHHHHHHhhc
Q 022969 263 VQLMRVAWFAG 273 (289)
Q Consensus 263 ~qLMrvawfag 273 (289)
.+|+|+||--|
T Consensus 13 ~~L~r~A~HLG 23 (68)
T d1gmua2 13 FMLAKACYALG 23 (68)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHc
Confidence 46899999876
No 7
>d1ooaa2 b.2.5.3 (A:38-250) p50 subunit of NF-kappa B (NFKB), N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=4.05 E-value=2.9e+02 Score=22.44 Aligned_cols=27 Identities=7% Similarity=-0.133 Sum_probs=18.0
Q ss_pred ccccccccceecC------ceeec-ccCCCCCCC
Q 022969 33 IPVVTSPCTHVKH------SPLCC-TKLTPWEPS 59 (289)
Q Consensus 33 ~~~~~fP~~~~~~------~~~~c-tk~~~we~s 59 (289)
-++-+||.++|.| +.++| ||..|-.|-
T Consensus 37 ~~~KTyPtV~i~ny~G~a~V~vsLVT~d~p~rpH 70 (213)
T d1ooaa2 37 KNKKSYPQVKICNYVGPAKVIVQLVTNGKNIHLH 70 (213)
T ss_dssp SSSCCCCEEEEESCCSCEEEEEEEECCSSSCCBC
T ss_pred CCCCcCceEEEecCCCCEEEEEEEEeCCCCCCcC
Confidence 4556999999988 34444 776664443
No 8
>d2olua2 e.3.1.1 (A:293-692) Penicillin-binding protein 2, PBP2 {Staphylococcus aureus [TaxId: 1280]}
Probab=3.65 E-value=51 Score=27.70 Aligned_cols=10 Identities=40% Similarity=1.042 Sum_probs=7.4
Q ss_pred HHHHhhccch
Q 022969 267 RVAWFAGFTS 276 (289)
Q Consensus 267 rvawfag~~~ 276 (289)
|-|||+|++-
T Consensus 313 ~daWFvG~~P 322 (400)
T d2olua2 313 KDVWINGFTP 322 (400)
T ss_dssp SEEEEEEECS
T ss_pred ceEEEEEecC
Confidence 4579999864
No 9
>d1s2ma2 c.37.1.19 (A:252-422) Putative ATP-dependent RNA helicase DHH1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=3.52 E-value=2e+02 Score=20.68 Aligned_cols=28 Identities=18% Similarity=0.082 Sum_probs=19.2
Q ss_pred ceeeeecccCccccccccc---cCCCCCCce
Q 022969 123 PCILLGTDSCARSKNTTRA---CNSKPPFSY 150 (289)
Q Consensus 123 ps~ll~tD~~~Rp~~~~~~---~~s~~P~~y 150 (289)
..+|++||..+|..+.... .+-.+|.+.
T Consensus 83 ~~ilv~Td~~~~Gid~~~v~~VI~~d~p~~~ 113 (171)
T d1s2ma2 83 VRTLVCSDLLTRGIDIQAVNVVINFDFPKTA 113 (171)
T ss_dssp SSEEEESSCSSSSCCCTTEEEEEESSCCSSH
T ss_pred cccccchhHhhhccccceeEEEEecCCcchH
Confidence 4689999999999885332 245566543
No 10
>d1oedc_ f.36.1.1 (C:) Acetylcholine receptor protein, delta chain {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]}
Probab=3.48 E-value=4.4e+02 Score=19.39 Aligned_cols=78 Identities=13% Similarity=0.108 Sum_probs=31.3
Q ss_pred eehhhHHHHHhhHHHHHHHh--hcccCCCCCCCCchhhHHHHHHHHHHHHHHHHHhHhhh--hccCceeeeeeeeehhhH
Q 022969 151 KFWNMVANTTGFIIPLLMLF--GSQKGFLQPQLPFIPFAVLLGPYLLLLSIQILTEMLTW--HWQSPVWLVTPVVYESYR 226 (289)
Q Consensus 151 k~W~~~~~ilG~viPlv~m~--g~w~G~~qP~lpf~~~~v~L~PYLllL~VQiltE~lt~--~wkSPVWlvvPvIYe~YR 226 (289)
|+-.++..+|++++=+.+.. .+-++. .+|.+ ...++=.++++++-++...+.. |.+++.
T Consensus 32 r~~l~it~lLs~~vf~~~v~~~lP~tS~---~vPli--~~y~~~~~~~v~~s~~~t~~Vl~~~~~~~~------------ 94 (260)
T d1oedc_ 32 KMSTAISVLLAQAVFLLLTSQRLPETAL---AVPLI--GKYLMFIMSLVTGVIVNCGIVLNFHFRTPS------------ 94 (260)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHH---HSCCC--THHHHHHHHHHHHHHHHHHHHHHHHHHC--------------
T ss_pred cEEeeHHHHHHHHHHHHHHHHhCCCCCC---CcchH--HHHHHHHHHHHHHHHHHHHhheeeeecccc------------
Confidence 78888888888876666655 233332 12333 2334444556666666666553 333322
Q ss_pred HHHHHhhhhhccccchhHHHHHHhhhhHHHH
Q 022969 227 VLQLMRGLKLGAELSAPAWIVHTVRGLVCWW 257 (289)
Q Consensus 227 l~QL~RglqL~~~lsap~Wv~~~irGlV~wW 257 (289)
...-|.|+++.+.+-..++
T Consensus 95 ------------~~~~p~w~R~~~l~~l~~~ 113 (260)
T d1oedc_ 95 ------------THVLSTRVKQIFLEKLPRI 113 (260)
T ss_dssp -------------------------------
T ss_pred ------------cCccchHHHHHHHHhccHH
Confidence 2234778888776655544
Done!