BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 022970
(289 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8VWJ1|HPT1_ARATH Homogentisate phytyltransferase 1, chloroplastic OS=Arabidopsis
thaliana GN=VTE2-1 PE=2 SV=1
Length = 393
Score = 312 bits (799), Expect = 2e-84, Method: Compositional matrix adjust.
Identities = 177/338 (52%), Positives = 217/338 (64%), Gaps = 73/338 (21%)
Query: 12 LQVSRCKVWNIIDRTTVVKLERYHLKHHIR--GAKDRSIYHQKIKIKHLANAASGHPLQS 69
++V RC D + VV ++ + +R G + + K K + NA +G
Sbjct: 32 IRVLRC------DSSKVVAKPKFR-NNLVRPDGQGSSLLLYPKHKSRFRVNATAG----- 79
Query: 70 NQPDDYKPKSPLNSVINALDAFYRFSRPHTVIGTALSIVSVALLAVEKVSDISPLFFTGV 129
QP+ + S S ++LDAFYRFSRPHTVIGT LSI+SV+ LAVEKVSDISPL FTG+
Sbjct: 80 -QPEAFDSNSKQKSFRDSLDAFYRFSRPHTVIGTVLSILSVSFLAVEKVSDISPLLFTGI 138
Query: 130 LEAIAAALMMNIYIVGLNQLSDIEIDK-----LPL-----------------------LR 161
LEA+ AALMMNIYIVGLNQLSD+EIDK LPL L
Sbjct: 139 LEAVVAALMMNIYIVGLNQLSDVEIDKVNKPYLPLASGEYSVNTGIAIVASFSIMSFWLG 198
Query: 162 W------------------------------KRFAVAAAMCILAVRAVVVQLAFYLHMQT 191
W KRFA+ AAMCILAVRA++VQ+AFYLH+QT
Sbjct: 199 WIVGSWPLFWALFVSFMLGTAYSINLPLLRWKRFALVAAMCILAVRAIIVQIAFYLHIQT 258
Query: 192 HVYRRPAVFSKPLIFATAFMSFFSVVIALFKDVPDLEGDKTFGIRTFTVRLGQKRVFWTC 251
HV+ RP +F++PLIFATAFMSFFSVVIALFKD+PD+EGDK FGIR+F+V LGQKRVFWTC
Sbjct: 259 HVFGRPILFTRPLIFATAFMSFFSVVIALFKDIPDIEGDKIFGIRSFSVTLGQKRVFWTC 318
Query: 252 ISLLEVAYTVAILVGATSPFAWSKLITDLGRSILALIL 289
++LL++AY VAILVGATSPF WSK+I+ +G ILA L
Sbjct: 319 VTLLQMAYAVAILVGATSPFIWSKVISVVGHVILATTL 356
>sp|B7FA90|HPT1_ORYSJ Probable homogentisate phytyltransferase 1, chloroplastic OS=Oryza
sativa subsp. japonica GN=HPT1 PE=2 SV=1
Length = 404
Score = 295 bits (756), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 166/300 (55%), Positives = 202/300 (67%), Gaps = 61/300 (20%)
Query: 50 HQKIKIKHLANAA--SGHPLQSNQPDDYKPKSPLNSVINALDAFYRFSRPHTVIGTALSI 107
H +I + +++A SG PLQS+ + + S + ++LDAFYRFSRPHTVIGTALSI
Sbjct: 69 HHRIPHRPTSSSADASGQPLQSSA-EAHDSSSIWKPISSSLDAFYRFSRPHTVIGTALSI 127
Query: 108 VSVALLAVEKVSDISPLFFTGVLEAIAAALMMNIYIVGLNQLSDIEIDK-----LPL--- 159
VSV+LLAVE +SD+SPLF TG+LEA+ AAL MNIYIVGLNQL DIEIDK LPL
Sbjct: 128 VSVSLLAVENLSDVSPLFLTGLLEAVVAALFMNIYIVGLNQLFDIEIDKVNKPTLPLASG 187
Query: 160 --------------------LRW------------------------------KRFAVAA 169
L W KR AV A
Sbjct: 188 EYSPATGVALVSAFAAMSFGLGWAVGSQPLFLALFISFILGTAYSINLPFLRWKRSAVVA 247
Query: 170 AMCILAVRAVVVQLAFYLHMQTHVYRRPAVFSKPLIFATAFMSFFSVVIALFKDVPDLEG 229
A+CILAVRAV+VQLAF+LH+QT V+RRPAVF++PLIFATAFM+FFSVVIALFKD+PD+EG
Sbjct: 248 ALCILAVRAVIVQLAFFLHIQTFVFRRPAVFTRPLIFATAFMTFFSVVIALFKDIPDIEG 307
Query: 230 DKTFGIRTFTVRLGQKRVFWTCISLLEVAYTVAILVGATSPFAWSKLITDLGRSILALIL 289
D+ FGI++F+VRLGQK+VFW C+ LLE+AY VAIL+GATS WSK T +G +ILA IL
Sbjct: 308 DRIFGIKSFSVRLGQKKVFWICVGLLEMAYCVAILMGATSACLWSKYATVVGHAILAAIL 367
>sp|B1B3P3|N8DT1_SOPFL Naringenin 8-dimethylallyltransferase 1, chloroplastic OS=Sophora
flavescens GN=N8DT-1 PE=1 SV=1
Length = 410
Score = 182 bits (461), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 116/320 (36%), Positives = 172/320 (53%), Gaps = 63/320 (19%)
Query: 31 LERYHLKHH--IRGAKDRSIYHQKIKIKHLANAASGHPLQSNQPDDYKPKSPLNSVINAL 88
+++LK H + S ++ + K++ NA S + +P P+S +SV +AL
Sbjct: 56 FSKHNLKQHYKVNEGGSTSNTSKECEKKYVVNAISEQSFE-YEPQTRDPESIWDSVNDAL 114
Query: 89 DAFYRFSRPHTVIGTAL-----SIVSVALLA--------------------------VEK 117
D FY+F RP+ + L S+V+V L+ + +
Sbjct: 115 DIFYKFCRPYAMFTIVLGATFKSLVAVEKLSDLSLAFFIGWLQVVVAVICIHIFGVGLNQ 174
Query: 118 VSDIS--------------PLFFTGVLEAIAAALMMNI---YIVGLNQL----------- 149
+ DI L F V+ A++L++ + +IV L
Sbjct: 175 LCDIEIDKINKPDLPLASGKLSFRNVVIITASSLILGLGFAWIVDSWPLFWTVFISCMVA 234
Query: 150 SDIEIDKLPLLRWKRFAVAAAMCILAVRAVVVQLAFYLHMQTHVYRRPAVFSKPLIFATA 209
S +D LPLLRWK++ V A+ +A AV L F+LHMQT V++RP F +PLIF TA
Sbjct: 235 SAYNVD-LPLLRWKKYPVLTAINFIADVAVTRSLGFFLHMQTCVFKRPTTFPRPLIFCTA 293
Query: 210 FMSFFSVVIALFKDVPDLEGDKTFGIRTFTVRLGQKRVFWTCISLLEVAYTVAILVGATS 269
+S +++VIALFKD+PD+EGD+ FGI++ ++RLG KRVFW C+SLLE+ Y V ILVGATS
Sbjct: 294 IVSIYAIVIALFKDIPDMEGDEKFGIQSLSLRLGPKRVFWICVSLLEMTYGVTILVGATS 353
Query: 270 PFAWSKLITDLGRSILALIL 289
P WSK+IT LG ++LA +L
Sbjct: 354 PILWSKIITVLGHAVLASVL 373
>sp|B9A1Q4|G4DT_SOYBN Glycinol 4-dimethylallyltransferase OS=Glycine max GN=G4DT PE=1
SV=1
Length = 409
Score = 171 bits (433), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 113/325 (34%), Positives = 168/325 (51%), Gaps = 68/325 (20%)
Query: 27 TVVKLERYHLKHHIRGAKDRSIYHQKIKIKHLANAASGHPLQSNQPDDYKPKSPLNSVIN 86
V++ ++ L HH + + S Y Q+ K + A S PL + PK+ L+SV N
Sbjct: 54 NVLRFQQPSLDHHYKCIRGGSTY-QECNRKFVVKAISKQPL-GFEAHASNPKNILDSVKN 111
Query: 87 ALDAFYRFSRPHTVIGTALSIVSVALLA-------------------------------V 115
L AFY FS P+T+IG L S +LLA V
Sbjct: 112 VLSAFYWFSYPYTMIGITLCAFSSSLLAVEKLSDISLSFLIGVLQGVLPQLFIEIYLCGV 171
Query: 116 EKVSDIS---------PL------FFTGVLEAIAAA----------------LMMNIYIV 144
++ D+ P+ F TGV+ I+AA L+ N+ ++
Sbjct: 172 NQLYDLEIDKINKPHLPMASGQFSFKTGVI--ISAAFLALSFGFTWITGSWPLICNLVVI 229
Query: 145 GLNQLSDIEIDKLPLLRWKRFAVAAAMCILAVRAVVVQLAFYLHMQTHVYRRPAVFSKPL 204
+ + ID +PLLRWKR+ AAMC+++ A+ + ++++ HMQT V +RP F + L
Sbjct: 230 A-SSWTAYSID-VPLLRWKRYPFVAAMCMISTWALALPISYFHHMQTVVLKRPIGFPRSL 287
Query: 205 IFATAFMSFFSVVIALFKDVPDLEGDKTFGIRTFTVRLGQKRVFWTCISLLEVAYTVAIL 264
F AFM+F+S+ +AL KD+PD+EGDK GI +F VRLGQKR FW C+S E+A+ V IL
Sbjct: 288 GFLVAFMTFYSLGLALSKDIPDVEGDKEHGIDSFAVRLGQKRAFWICVSFFEMAFGVGIL 347
Query: 265 VGATSPFAWSKLITDLGRSILALIL 289
GA+ W+K+ T +G ++LA IL
Sbjct: 348 AGASCSHFWTKIFTGMGNAVLASIL 372
>sp|Q1ACB3|HPT2_ARATH Homogentisate phytyltransferase 2, chloroplastic OS=Arabidopsis
thaliana GN=HPT2 PE=2 SV=1
Length = 386
Score = 77.4 bits (189), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 72/280 (25%), Positives = 122/280 (43%), Gaps = 72/280 (25%)
Query: 43 AKDRSIYHQKIKIKHLANAASGHPLQSNQPDDYKPKSPLNSVINALDAFYRFSRPHTVIG 102
+K S ++KI I+ + + +S+ P L+ + +A +RF RPHT+ G
Sbjct: 56 SKFVSTNYRKISIRACSQVGAA---ESDDPV-------LDRIARFQNACWRFLRPHTIRG 105
Query: 103 TALSIVSVALLAVEKVSDISPLFFTGVLEAIAAALMM-----------NIYIVGLNQLS- 150
TAL S AL+ + + + ++ VL+A++ L + IY +G+++++
Sbjct: 106 TALG--STALVTRALIENTHLIKWSLVLKALSGLLALICGNGYIVGINQIYDIGIDKVNK 163
Query: 151 --------DIEIDK---------------------------------------LPLLRWK 163
D+ + +P LR K
Sbjct: 164 PYLPIAAGDLSVQSAWLLVIFFAIAGLLVVGFNFGPFITSLYSLGLFLGTIYSVPPLRMK 223
Query: 164 RFAVAAAMCILAVRAVVVQLAFYLHMQTHVYRRPAVFSKPLIFATAFMSFFSVVIALFKD 223
RF VAA + I VR ++ Y H P +S P+ F T+F++ F++VIA+ KD
Sbjct: 224 RFPVAAFLIIATVRGFLLNFGVY-HATRAALGLPFQWSAPVAFITSFVTLFALVIAITKD 282
Query: 224 VPDLEGDKTFGIRTFTVRLGQKRVFWTCISLLEVAYTVAI 263
+PD+EGD+ F I T +LG + + + LL V Y AI
Sbjct: 283 LPDVEGDRKFQISTLATKLGVRNIAFLGSGLLLVNYVSAI 322
>sp|Q0D576|HPT2_ORYSJ Probable homogentisate phytyltransferase 2, chloroplastic OS=Oryza
sativa subsp. japonica GN=HPT2 PE=3 SV=2
Length = 379
Score = 64.3 bits (155), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 43/129 (33%), Positives = 67/129 (51%), Gaps = 11/129 (8%)
Query: 154 IDKLPLLRWKRFAVAAAMCILAVRAVVVQLAFYLHMQTHVYRRPAV-----FSKPLIFAT 208
I +P R KR+ VAA + I VR F L+ + R A+ +S P+ F T
Sbjct: 207 IYSVPPFRLKRYPVAAFLIIATVRG------FLLNFGVYYATRAALGLTFQWSSPVAFIT 260
Query: 209 AFMSFFSVVIALFKDVPDLEGDKTFGIRTFTVRLGQKRVFWTCISLLEVAYTVAILVGAT 268
F++ F++VIA+ KD+PD+EGD+ + I T +LG + + + LL Y AI V
Sbjct: 261 CFVTLFALVIAITKDLPDVEGDRKYQISTLATKLGVRNIAFLGSGLLIANYVAAIAVAFL 320
Query: 269 SPFAWSKLI 277
P A+ + +
Sbjct: 321 MPQAFRRTV 329
Score = 52.0 bits (123), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 33/81 (40%), Positives = 47/81 (58%), Gaps = 2/81 (2%)
Query: 79 SPLNSVINAL-DAFYRFSRPHTVIGTAL-SIVSVALLAVEKVSDISPLFFTGVLEAIAAA 136
+PL+ ++ L D+ +RF RPHT+ GTAL SI VA +E I+ + A
Sbjct: 74 APLSKTLSDLKDSCWRFLRPHTIRGTALGSIALVARALIENPQLINWWLVFKAFYGLVAL 133
Query: 137 LMMNIYIVGLNQLSDIEIDKL 157
+ N YIVG+NQ+ DI IDK+
Sbjct: 134 ICGNGYIVGINQIYDIRIDKV 154
>sp|Q971A3|DGGGP_SULTO Digeranylgeranylglyceryl phosphate synthase OS=Sulfolobus tokodaii
(strain DSM 16993 / JCM 10545 / NBRC 100140 / 7)
GN=STK_14510 PE=3 SV=1
Length = 278
Score = 39.7 bits (91), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 52/209 (24%), Positives = 89/209 (42%), Gaps = 52/209 (24%)
Query: 87 ALDAFYRFSRPHTVIGTALSIVSVALLAVE-KVSDISPLFFTGVLEAIAAALMMNIYIVG 145
++ A++ R H VIG+A+S+ ++A E K+ I + V+ IAA YI+
Sbjct: 2 SVKAYFELVRIHNVIGSAISVFMGYVVASEWKIVPIKLILAMIVVSVIAAGG----YII- 56
Query: 146 LNQLSDIEIDK-------LPLLRWK----------RFAVAAAMCILA-----VRAVVVQL 183
N + DIEIDK LP R K F V + +L + A++ L
Sbjct: 57 -NDVFDIEIDKINKPNRPLPSGRIKISRARSLSIVLFLVGIVLSVLLNIYAFIIALLTVL 115
Query: 184 AFYLHMQ-------------------THVYRRPAVFSKPLIF----ATAFMSFFSVVIAL 220
A Y + + + Y A F + T ++ FF++
Sbjct: 116 ALYYYAKDLKKQGLVGNLIVALTSALSAFYGGLAFFEGSWVIRTLIPTLYIFFFTLTREF 175
Query: 221 FKDVPDLEGDKTFGIRTFTVRLGQKRVFW 249
K + D++GD T G++T VR+G ++ ++
Sbjct: 176 VKGIEDVKGDMTNGVKTLAVRVGIEKTWF 204
>sp|Q8TZM7|DGGGP_PYRFU Digeranylgeranylglyceryl phosphate synthase OS=Pyrococcus furiosus
(strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1)
GN=PF1963 PE=3 SV=1
Length = 277
Score = 38.9 bits (89), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 50/203 (24%), Positives = 77/203 (37%), Gaps = 51/203 (25%)
Query: 88 LDAFYRFSRPHTVIGTALSIVSVALLAVEKVSDISPL--FFTGVLEAIAAALMMNIYIVG 145
+ F RPH I + + AL+A E + DI L F V + N Y
Sbjct: 3 VKGFIEIMRPHNCILAGIVGILGALVAYEGIPDIKTLTLIFWVVYFGCSGGNTANDYF-- 60
Query: 146 LNQLSDIEIDKL-----PLLRWKRFAVAAAMCILAVRAVVVQLAFYLHMQTHVYRRPAVF 200
D EIDK+ PL R AA L A+ LA++L+++ V+ A F
Sbjct: 61 -----DYEIDKINRPNRPLPRGAMSRRAALYYALLQYAIGSILAYFLNIRAFVFATIAYF 115
Query: 201 S--------KPL-------------------------IFATAFMSFFSVVI----ALFKD 223
KPL I +++ + ++ + KD
Sbjct: 116 LTFLYGWKLKPLPLVGNITVAALTAATPIYGAIGVGRIGLAGYLAICAFLVNVSREIMKD 175
Query: 224 VPDLEGDKTFGIRTFTVRLGQKR 246
+ D+EGDK G RT + +G+K+
Sbjct: 176 IEDIEGDKALGARTLPIIIGEKK 198
>sp|Q4J8K2|DGGGP_SULAC Digeranylgeranylglyceryl phosphate synthase OS=Sulfolobus
acidocaldarius (strain ATCC 33909 / DSM 639 / JCM 8929 /
NBRC 15157 / NCIMB 11770) GN=Saci_1565 PE=3 SV=1
Length = 275
Score = 38.5 bits (88), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 47/202 (23%), Positives = 82/202 (40%), Gaps = 49/202 (24%)
Query: 87 ALDAFYRFSRPHTVIGTALSIVSVALLAVEKVSDISPLFFTGVLEAIAAALMMNIYIVGL 146
++ A+ R H V+G+A+S ++A +PLFF +L + + + Y++
Sbjct: 2 SVKAYLELIRVHNVVGSAVSAFMGYVIATTW--KFTPLFFLPLL--VVSLIAAGGYVI-- 55
Query: 147 NQLSDIEIDK-------LPLLRW-----KRFAVA--AAMCILAVRAVVVQLAFYLHMQTH 192
N + DIE+DK LP R +RF++ A I+++ ++ F L
Sbjct: 56 NDVYDIEVDKINKPERPLPSGRIAVNIARRFSIVLFAVGLIISIPLGLIPFGFALITIVL 115
Query: 193 VYRRPAVFSK-----------------------------PLIFATAFMSFFSVVIALFKD 223
+Y K I T ++ FF++ K
Sbjct: 116 LYEYARSLKKLGLVGNFIVALTSALSAYYGGLASGSLLGNFIIPTIYIFFFTLSREFVKG 175
Query: 224 VPDLEGDKTFGIRTFTVRLGQK 245
+ D+EGDK G+ T V+LG+K
Sbjct: 176 IEDIEGDKRNGVNTLAVKLGEK 197
>sp|Q9M3W5|CHLG_AVESA Chlorophyll synthase, chloroplastic OS=Avena sativa GN=CHLG PE=1
SV=1
Length = 378
Score = 37.7 bits (86), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 14/54 (25%), Positives = 28/54 (51%)
Query: 204 LIFATAFMSFFSVVIALFKDVPDLEGDKTFGIRTFTVRLGQKRVFWTCISLLEV 257
++ T S + IA+ D +EGD+T G+++ V G + W C+ +++
Sbjct: 257 IVVLTCLYSIAGLGIAIVNDFKSIEGDRTLGLQSLPVAFGMETAKWICVGAIDI 310
>sp|Q5W6H5|CHLG_ORYSJ Chlorophyll synthase, chloroplastic OS=Oryza sativa subsp. japonica
GN=CHLG PE=2 SV=1
Length = 376
Score = 36.2 bits (82), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 13/54 (24%), Positives = 28/54 (51%)
Query: 204 LIFATAFMSFFSVVIALFKDVPDLEGDKTFGIRTFTVRLGQKRVFWTCISLLEV 257
++ T+ S + IA+ D +EGD+ G+++ V G + W C+ +++
Sbjct: 255 IVVLTSLYSIAGLGIAIVNDFKSVEGDRALGLQSLPVAFGMETAKWICVGAIDI 308
>sp|B1L6Z7|DGGGP_KORCO Digeranylgeranylglyceryl phosphate synthase OS=Korarchaeum
cryptofilum (strain OPF8) GN=Kcr_1480 PE=3 SV=1
Length = 281
Score = 35.0 bits (79), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 21/47 (44%), Positives = 31/47 (65%), Gaps = 3/47 (6%)
Query: 201 SKPLIFATAFMSFFSVVIALF-KDVPDLEGDKTFGIRTFTVRLGQKR 246
+K +IF++ ++F S +I F K V DL GD+ G+RT VR+G KR
Sbjct: 154 NKVIIFSS--VAFTSNLIREFVKAVEDLPGDRAHGVRTIAVRIGVKR 198
>sp|Q38833|CHLG_ARATH Chlorophyll synthase, chloroplastic OS=Arabidopsis thaliana GN=CHLG
PE=2 SV=1
Length = 387
Score = 34.7 bits (78), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 13/50 (26%), Positives = 25/50 (50%)
Query: 208 TAFMSFFSVVIALFKDVPDLEGDKTFGIRTFTVRLGQKRVFWTCISLLEV 257
T S + IA+ D +EGD+ G+++ V G + W C+ +++
Sbjct: 270 TLLYSIAGLGIAIVNDFKSVEGDRALGLQSLPVAFGTETAKWICVGAIDI 319
>sp|Q3INH7|DGGGP_NATPD Digeranylgeranylglyceryl phosphate synthase OS=Natronomonas
pharaonis (strain DSM 2160 / ATCC 35678) GN=NP_4470A
PE=3 SV=1
Length = 277
Score = 34.3 bits (77), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 34/66 (51%), Gaps = 2/66 (3%)
Query: 183 LAFYLHMQTHVYRRPAVFSK--PLIFATAFMSFFSVVIALFKDVPDLEGDKTFGIRTFTV 240
L YL T +Y AV ++ A + ++ + KDV D++GD+ G+RT +
Sbjct: 134 LVAYLTGSTFLYGGAAVGGDLAAVVVLFALAACATMAREIVKDVEDIDGDRAEGLRTLPI 193
Query: 241 RLGQKR 246
+G++R
Sbjct: 194 VIGERR 199
>sp|A7I9E7|DGGGP_METB6 Digeranylgeranylglyceryl phosphate synthase OS=Methanoregula boonei
(strain 6A8) GN=Mboo_1843 PE=3 SV=1
Length = 279
Score = 34.3 bits (77), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 27/54 (50%), Gaps = 5/54 (9%)
Query: 220 LFKDVPDLEGDKTFGIRTFTVRLGQKRVFWTCISLLEVAYTVAILVGATSPFAW 273
L KD D+EGD+ G T +R+G ++ +L+ A T + + P+ W
Sbjct: 172 LLKDAEDIEGDRAHGADTLAIRIGVRKT-----ALIAFACTAFAIAASAVPYLW 220
>sp|O57753|DGGGP_PYRHO Digeranylgeranylglyceryl phosphate synthase OS=Pyrococcus
horikoshii (strain ATCC 700860 / DSM 12428 / JCM 9974 /
NBRC 100139 / OT-3) GN=PH0027 PE=3 SV=1
Length = 277
Score = 34.3 bits (77), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 18/27 (66%)
Query: 220 LFKDVPDLEGDKTFGIRTFTVRLGQKR 246
+ KD+ D EGDK G RT + +G+K+
Sbjct: 172 IMKDIEDFEGDKRLGARTLPIMIGKKK 198
>sp|Q5BIR3|THSD1_BOVIN Thrombospondin type-1 domain-containing protein 1 OS=Bos taurus
GN=THSD1 PE=2 SV=1
Length = 849
Score = 33.9 bits (76), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 24/40 (60%)
Query: 213 FFSVVIALFKDVPDLEGDKTFGIRTFTVRLGQKRVFWTCI 252
F VIA+FK+ P L G++T + ++ LG++R + C
Sbjct: 266 FVQGVIAVFKEAPRLPGERTNRLAENSLALGERRTGFNCT 305
>sp|A1S477|DEOD_SHEAM Purine nucleoside phosphorylase DeoD-type OS=Shewanella amazonensis
(strain ATCC BAA-1098 / SB2B) GN=deoD PE=3 SV=1
Length = 236
Score = 33.9 bits (76), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 29/110 (26%), Positives = 54/110 (49%), Gaps = 9/110 (8%)
Query: 99 TVIGTALSIVSVALLAVEKVSD--ISPLFFTGVLEAIAAALMMNIYIVGLNQLSDIEIDK 156
+V+G+ + I S ++ A E + D + L G AI+ + + I+G+ +D ++++
Sbjct: 59 SVMGSGMGIPSCSIYATELIKDYGVKNLIRVGTCGAISTDVKVRDVIIGMGACTDSQVNR 118
Query: 157 LPLLRWKRFAVAAAMCILAVRAVVVQLAFYLHMQTHVYRRPAVFSKPLIF 206
L + + FA A +L + VV+ A +QT V VFS L +
Sbjct: 119 LR-FKGQDFAAIADYSLL---SAVVESAKTHGIQTRVGN---VFSADLFY 161
>sp|A0B8A0|DGGGP_METTP Digeranylgeranylglyceryl phosphate synthase OS=Methanosaeta
thermophila (strain DSM 6194 / PT) GN=Mthe_1142 PE=3
SV=1
Length = 267
Score = 32.7 bits (73), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 32/62 (51%), Gaps = 4/62 (6%)
Query: 208 TAFMSFFSVVIAL----FKDVPDLEGDKTFGIRTFTVRLGQKRVFWTCISLLEVAYTVAI 263
TAF+S S + L KD+ DL GD G +T +G+++ F +L VA ++
Sbjct: 153 TAFLSILSALATLSREIVKDIEDLPGDLAHGAKTLPAFIGKRKSFVLASLVLIVAMLLSY 212
Query: 264 LV 265
LV
Sbjct: 213 LV 214
>sp|A6UVU6|DGGGP_META3 Digeranylgeranylglyceryl phosphate synthase OS=Methanococcus
aeolicus (strain Nankai-3 / ATCC BAA-1280) GN=Maeo_1040
PE=3 SV=1
Length = 279
Score = 32.7 bits (73), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 32/144 (22%), Positives = 58/144 (40%), Gaps = 41/144 (28%)
Query: 146 LNQLSDIEIDKL-----PLLRWKRFAVAAAMC--ILAVRAVVVQL------------AFY 186
LN + DIEIDK+ PL K +A + +L + +++ L +
Sbjct: 59 LNDIQDIEIDKINKPNRPLPSNKISLKSATIFSYLLMISGIIISLFNMICFAIALINSIV 118
Query: 187 LHMQTHVYRRPAVFSKPL---------IFATAFMSFFSVVIALF-------------KDV 224
L++ Y+R + + IF A + + + LF KD
Sbjct: 119 LYLYAKKYKRNKIIGNLIVAYLTGSIFIFGGASVGNVEITLILFLCALFATWSREIIKDY 178
Query: 225 PDLEGDKTFGIRTFTVRLGQKRVF 248
DL+GDK+ G+ + ++ G+ +F
Sbjct: 179 EDLDGDKSEGVISLPIKYGKNSIF 202
>sp|A5ULR8|DGGGP_METS3 Digeranylgeranylglyceryl phosphate synthase OS=Methanobrevibacter
smithii (strain PS / ATCC 35061 / DSM 861) GN=Msm_0941
PE=3 SV=1
Length = 283
Score = 32.3 bits (72), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 14/46 (30%), Positives = 28/46 (60%), Gaps = 4/46 (8%)
Query: 204 LIFATAFMSFFSVVIA----LFKDVPDLEGDKTFGIRTFTVRLGQK 245
+I+ + ++FF++++ + KD+ D+EGD G +TF + G K
Sbjct: 155 IIYESYLLAFFALIMTTAREITKDIEDMEGDMAEGAKTFPILYGPK 200
>sp|Q9HRP0|DGGGP_HALSA Digeranylgeranylglyceryl phosphate synthase OS=Halobacterium
salinarum (strain ATCC 700922 / JCM 11081 / NRC-1)
GN=VNG_0610G PE=3 SV=2
Length = 276
Score = 32.3 bits (72), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 31/67 (46%), Gaps = 1/67 (1%)
Query: 183 LAFYLHMQTHVYRRPAVFSKPLIFATAFMSFFSVVI-ALFKDVPDLEGDKTFGIRTFTVR 241
L YL T V+ AV S A ++ S + KDV DL GD+ G+RT V
Sbjct: 135 LVAYLGGSTFVFGAAAVGSPLAGGVLAALAALSTFAREVIKDVEDLAGDRAAGLRTLPVV 194
Query: 242 LGQKRVF 248
+G +R
Sbjct: 195 VGHQRAL 201
>sp|B0R3S1|DGGGP_HALS3 Digeranylgeranylglyceryl phosphate synthase OS=Halobacterium
salinarum (strain ATCC 29341 / DSM 671 / R1) GN=OE_1921R
PE=3 SV=1
Length = 276
Score = 32.3 bits (72), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 31/67 (46%), Gaps = 1/67 (1%)
Query: 183 LAFYLHMQTHVYRRPAVFSKPLIFATAFMSFFSVVI-ALFKDVPDLEGDKTFGIRTFTVR 241
L YL T V+ AV S A ++ S + KDV DL GD+ G+RT V
Sbjct: 135 LVAYLGGSTFVFGAAAVGSPLAGGVLAALAALSTFAREVIKDVEDLAGDRAAGLRTLPVV 194
Query: 242 LGQKRVF 248
+G +R
Sbjct: 195 VGHQRAL 201
>sp|B8FXS7|GLPK_DESHD Glycerol kinase OS=Desulfitobacterium hafniense (strain DCB-2 / DSM
10664) GN=glpK PE=3 SV=1
Length = 494
Score = 32.0 bits (71), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 44/99 (44%), Gaps = 6/99 (6%)
Query: 20 WNIIDRTTVVKLERYHLKHHIRGAKDRSIYHQKIKIKHLANAASGHPLQSNQPDDYKPKS 79
W++ R +V L R K+HI A S+ +Q I A S PLQ + D +
Sbjct: 355 WDMDARGAIVGLTRGSNKNHIIRAALESMAYQTRDILEAMEADSQLPLQLLKVDG---GA 411
Query: 80 PLNSVINALDA---FYRFSRPHTVIGTALSIVSVALLAV 115
+N+++ A RPH + TAL +A LA+
Sbjct: 412 VVNNLLMQFQADILGVEVERPHCIETTALGAAYLAGLAI 450
>sp|Q5JDN5|DGGGP_PYRKO Digeranylgeranylglyceryl phosphate synthase OS=Pyrococcus
kodakaraensis (strain ATCC BAA-918 / JCM 12380 / KOD1)
GN=TK1957 PE=3 SV=1
Length = 277
Score = 31.2 bits (69), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
Query: 187 LHMQTHVYRRPAVFSKPLIFATAFMSFF-SVVIALFKDVPDLEGDKTFGIRTFTVRLGQK 245
L T +Y AV L A +F +V + KD+ D+EGD G +T + +G+K
Sbjct: 138 LTGATPLYGAIAVGEIGLAGTLALCAFLVNVAREVIKDIEDIEGDMAKGAKTLPILIGRK 197
Query: 246 R 246
R
Sbjct: 198 R 198
>sp|Q8TWS9|DGGGP_METKA Digeranylgeranylglyceryl phosphate synthase OS=Methanopyrus
kandleri (strain AV19 / DSM 6324 / JCM 9639 / NBRC
100938) GN=MK0953 PE=3 SV=1
Length = 271
Score = 31.2 bits (69), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 15/52 (28%), Positives = 27/52 (51%), Gaps = 4/52 (7%)
Query: 193 VYRRPAVFSKPLIFATAFMSFFSVVIALFKDVPDLEGDKTFGIRTFTVRLGQ 244
V +RPA P ++ ++V + KD+ D+EGD G++T + G+
Sbjct: 145 VGQRPA----PAVWLFLLAFLANLVREILKDLEDVEGDAALGLKTLPIAYGE 192
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.328 0.139 0.417
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 98,285,212
Number of Sequences: 539616
Number of extensions: 3711364
Number of successful extensions: 11392
Number of sequences better than 100.0: 38
Number of HSP's better than 100.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 22
Number of HSP's that attempted gapping in prelim test: 11364
Number of HSP's gapped (non-prelim): 45
length of query: 289
length of database: 191,569,459
effective HSP length: 116
effective length of query: 173
effective length of database: 128,974,003
effective search space: 22312502519
effective search space used: 22312502519
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 61 (28.1 bits)