Query 022970
Match_columns 289
No_of_seqs 185 out of 478
Neff 5.0
Searched_HMMs 46136
Date Fri Mar 29 07:29:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022970.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/022970hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02878 homogentisate phytylt 100.0 2.3E-46 4.9E-51 349.2 18.7 184 106-289 2-243 (280)
2 PRK12887 ubiA tocopherol phyty 100.0 8.3E-42 1.8E-46 322.3 22.8 212 77-289 2-269 (308)
3 PRK13595 ubiA prenyltransferas 99.9 3.9E-24 8.4E-29 201.4 16.2 176 84-263 8-230 (292)
4 TIGR01476 chlor_syn_BchG bacte 99.9 6.2E-24 1.3E-28 197.0 16.3 178 89-268 1-227 (283)
5 PRK13105 ubiA prenyltransferas 99.9 1.4E-23 3.1E-28 196.7 18.2 174 88-267 1-225 (282)
6 TIGR02056 ChlG chlorophyll syn 99.9 1E-22 2.2E-27 192.0 22.4 181 83-267 11-248 (306)
7 PLN00012 chlorophyll synthetas 99.9 2.9E-22 6.3E-27 194.4 22.6 178 82-263 79-313 (375)
8 PRK07566 bacteriochlorophyll/c 99.9 1.5E-21 3.2E-26 184.6 20.8 179 85-265 24-252 (314)
9 PRK12392 bacteriochlorophyll c 99.9 2.4E-21 5.3E-26 185.1 22.2 187 84-272 8-250 (331)
10 PRK06080 1,4-dihydroxy-2-napht 99.9 2.3E-21 5.1E-26 180.2 19.9 178 88-269 3-235 (293)
11 PRK09573 (S)-2,3-di-O-geranylg 99.9 3.4E-21 7.4E-26 178.6 20.1 170 88-263 3-215 (279)
12 PRK12882 ubiA prenyltransferas 99.9 5.7E-21 1.2E-25 176.6 21.2 170 88-263 4-218 (276)
13 PRK12884 ubiA prenyltransferas 99.9 5.4E-21 1.2E-25 176.4 19.8 176 86-267 2-220 (279)
14 PRK12875 ubiA prenyltransferas 99.9 5.6E-21 1.2E-25 179.0 19.5 179 84-267 4-230 (282)
15 TIGR01475 ubiA_other putative 99.9 1.8E-20 4E-25 173.9 21.5 175 88-270 2-226 (282)
16 COG0382 UbiA 4-hydroxybenzoate 99.9 1.5E-20 3.2E-25 175.1 20.4 176 85-268 10-232 (289)
17 PRK13106 ubiA prenyltransferas 99.9 4.1E-20 8.8E-25 174.6 23.2 178 84-270 11-244 (300)
18 PRK12883 ubiA prenyltransferas 99.9 3.4E-20 7.4E-25 171.5 20.8 160 88-254 3-206 (277)
19 PRK12847 ubiA 4-hydroxybenzoat 99.9 8.3E-20 1.8E-24 170.0 22.1 180 83-267 2-230 (285)
20 PRK12874 ubiA prenyltransferas 99.9 1.1E-19 2.4E-24 170.7 22.9 182 82-267 2-232 (291)
21 PRK12872 ubiA prenyltransferas 99.9 4.3E-20 9.3E-25 170.5 18.5 178 86-270 2-229 (285)
22 PRK13387 1,4-dihydroxy-2-napht 99.8 6E-20 1.3E-24 174.4 19.5 178 88-268 3-255 (317)
23 PRK07419 1,4-dihydroxy-2-napht 99.8 6.7E-20 1.4E-24 173.5 19.6 178 85-269 9-241 (304)
24 PRK12870 ubiA 4-hydroxybenzoat 99.8 1.5E-19 3.4E-24 169.4 21.4 177 84-268 5-231 (290)
25 PRK05951 ubiA prenyltransferas 99.8 1.5E-19 3.3E-24 169.6 20.3 180 86-269 2-237 (296)
26 PRK12895 ubiA prenyltransferas 99.8 4.1E-19 8.9E-24 166.9 21.1 178 88-270 3-227 (286)
27 PRK12886 ubiA prenyltransferas 99.8 2E-18 4.4E-23 162.0 22.5 179 84-268 4-228 (291)
28 PLN02922 prenyltransferase 99.8 1.1E-18 2.5E-23 165.7 20.8 182 86-270 13-256 (315)
29 PRK12888 ubiA prenyltransferas 99.8 1.8E-18 3.8E-23 162.0 21.2 177 88-270 2-227 (284)
30 TIGR02235 menA_cyano-plnt 1,4- 99.8 1.2E-18 2.7E-23 163.3 19.6 176 91-269 2-228 (285)
31 PRK12878 ubiA 4-hydroxybenzoat 99.8 9.1E-18 2E-22 159.3 24.3 175 82-261 24-251 (314)
32 PLN02809 4-hydroxybenzoate non 99.8 7.9E-18 1.7E-22 158.2 20.3 179 86-269 4-232 (289)
33 PRK12848 ubiA 4-hydroxybenzoat 99.8 1.8E-17 4E-22 154.3 22.0 174 86-267 3-226 (282)
34 PRK04375 protoheme IX farnesyl 99.8 8.7E-18 1.9E-22 157.6 19.8 175 85-264 7-229 (296)
35 PRK12869 ubiA protoheme IX far 99.8 8.5E-18 1.8E-22 156.5 18.6 169 87-260 1-217 (279)
36 TIGR00751 menA 1,4-dihydroxy-2 99.8 1.3E-17 2.8E-22 156.4 19.6 169 96-268 1-230 (284)
37 COG1575 MenA 1,4-dihydroxy-2-n 99.8 1.1E-17 2.3E-22 158.2 18.6 181 87-272 7-246 (303)
38 PRK12871 ubiA prenyltransferas 99.8 1.7E-17 3.6E-22 156.5 18.7 172 86-261 3-234 (297)
39 PRK13592 ubiA prenyltransferas 99.8 2.5E-17 5.4E-22 155.6 18.4 125 136-262 55-233 (299)
40 PRK13362 protoheme IX farnesyl 99.8 6.3E-17 1.4E-21 153.2 20.5 164 84-252 9-220 (306)
41 TIGR01473 cyoE_ctaB protoheme 99.7 8.6E-17 1.9E-21 149.3 18.8 175 89-267 1-223 (280)
42 TIGR01474 ubiA_proteo 4-hydrox 99.7 2.2E-16 4.7E-21 147.2 21.1 168 89-261 2-219 (281)
43 PRK13591 ubiA prenyltransferas 99.7 8.5E-17 1.8E-21 152.7 17.7 63 216-278 193-255 (307)
44 PRK12873 ubiA prenyltransferas 99.7 3.1E-15 6.6E-20 141.4 20.7 179 86-270 5-237 (294)
45 PRK12876 ubiA prenyltransferas 99.7 5E-15 1.1E-19 140.3 21.8 182 86-269 2-239 (300)
46 PF01040 UbiA: UbiA prenyltran 99.6 3E-14 6.4E-19 127.3 15.7 44 206-249 150-193 (257)
47 PRK08238 hypothetical protein; 99.3 1.5E-10 3.2E-15 116.1 17.5 178 51-235 156-377 (479)
48 PLN02776 prenyltransferase 99.1 7.5E-09 1.6E-13 100.1 20.0 70 94-168 1-79 (341)
49 PRK12324 phosphoribose diphosp 99.1 1.4E-09 2.9E-14 103.2 13.4 81 83-167 6-95 (295)
50 COG0109 CyoE Polyprenyltransfe 99.0 4.4E-08 9.5E-13 93.3 17.6 157 84-251 14-224 (304)
51 KOG1381 Para-hydroxybenzoate-p 98.2 7.8E-06 1.7E-10 77.4 10.3 188 84-273 60-294 (353)
52 KOG4581 Predicted membrane pro 97.9 0.00011 2.3E-09 68.6 10.6 182 85-270 58-297 (359)
53 KOG1380 Heme A farnesyltransfe 93.6 0.015 3.2E-07 56.8 -0.8 79 84-168 90-177 (409)
54 PRK12884 ubiA prenyltransferas 79.6 7.2 0.00016 36.1 7.2 47 212-259 47-96 (279)
55 TIGR02056 ChlG chlorophyll syn 77.1 16 0.00034 34.8 8.9 55 210-265 62-119 (306)
56 PRK12872 ubiA prenyltransferas 68.2 48 0.001 30.6 9.7 27 209-235 43-69 (285)
57 PRK13592 ubiA prenyltransferas 67.2 50 0.0011 32.1 9.7 76 187-263 29-109 (299)
58 PRK12887 ubiA tocopherol phyty 64.8 25 0.00053 33.7 7.2 35 220-255 71-108 (308)
59 PRK13591 ubiA prenyltransferas 64.4 1.4E+02 0.0031 29.0 12.4 42 187-233 48-89 (307)
60 PF05106 Phage_holin_3: Phage 62.8 41 0.00088 27.3 7.1 65 79-153 6-70 (100)
61 PRK12324 phosphoribose diphosp 62.4 24 0.00052 33.8 6.6 47 214-260 58-108 (295)
62 PF01040 UbiA: UbiA prenyltran 61.8 59 0.0013 28.8 8.7 32 213-244 34-66 (257)
63 COG0382 UbiA 4-hydroxybenzoate 60.8 37 0.0008 31.8 7.5 44 214-257 59-106 (289)
64 PRK13595 ubiA prenyltransferas 60.8 52 0.0011 31.7 8.6 47 210-257 55-104 (292)
65 TIGR01476 chlor_syn_BchG bacte 59.8 30 0.00065 32.2 6.7 45 213-258 49-96 (283)
66 PRK12882 ubiA prenyltransferas 59.3 28 0.00061 32.3 6.4 44 214-258 50-96 (276)
67 PRK09573 (S)-2,3-di-O-geranylg 56.4 41 0.00088 31.3 7.0 46 213-259 48-96 (279)
68 PLN00012 chlorophyll synthetas 54.5 1E+02 0.0022 30.6 9.7 37 214-251 135-174 (375)
69 PRK12883 ubiA prenyltransferas 53.4 48 0.001 30.7 6.9 42 215-257 50-94 (277)
70 PRK07566 bacteriochlorophyll/c 49.2 43 0.00092 32.0 6.0 45 214-259 77-124 (314)
71 COG1575 MenA 1,4-dihydroxy-2-n 48.1 54 0.0012 31.9 6.4 33 133-165 182-219 (303)
72 cd00867 Trans_IPPS Trans-Isopr 48.0 23 0.00049 31.4 3.7 43 209-251 153-205 (236)
73 PRK12888 ubiA prenyltransferas 47.8 1.9E+02 0.0041 27.4 10.0 17 140-156 172-188 (284)
74 PRK12875 ubiA prenyltransferas 47.0 2.6E+02 0.0056 26.5 11.4 20 218-237 61-80 (282)
75 TIGR01475 ubiA_other putative 42.6 2.8E+02 0.0061 25.7 14.8 17 140-156 171-187 (282)
76 PRK12869 ubiA protoheme IX far 41.3 1.2E+02 0.0025 28.5 7.5 46 213-258 47-96 (279)
77 PLN02809 4-hydroxybenzoate non 39.3 2.9E+02 0.0062 26.3 9.9 41 215-255 58-102 (289)
78 PRK12895 ubiA prenyltransferas 37.9 2.4E+02 0.0052 26.9 9.1 73 215-287 50-138 (286)
79 PRK12886 ubiA prenyltransferas 37.4 96 0.0021 29.4 6.3 12 145-156 180-191 (291)
80 PRK06080 1,4-dihydroxy-2-napht 36.4 81 0.0017 29.4 5.6 17 140-156 181-197 (293)
81 TIGR00765 yihY_not_rbn YihY fa 35.9 3.4E+02 0.0075 24.8 10.4 22 135-156 96-117 (259)
82 PRK12392 bacteriochlorophyll c 35.8 2.6E+02 0.0057 27.2 9.1 45 218-263 66-113 (331)
83 PRK13106 ubiA prenyltransferas 34.9 1.3E+02 0.0027 28.9 6.7 38 214-251 61-102 (300)
84 PRK13362 protoheme IX farnesyl 34.3 4.2E+02 0.0092 25.3 12.0 45 213-257 58-106 (306)
85 PRK13387 1,4-dihydroxy-2-napht 34.1 4.3E+02 0.0094 25.4 11.4 22 135-156 197-218 (317)
86 TIGR01473 cyoE_ctaB protoheme 33.5 2E+02 0.0044 26.7 7.8 46 213-258 46-95 (280)
87 PRK10299 PhoPQ regulatory prot 32.9 49 0.0011 23.7 2.7 23 131-155 11-33 (47)
88 PRK04375 protoheme IX farnesyl 31.4 1.7E+02 0.0038 27.5 7.0 43 214-256 56-102 (296)
89 KOG4016 Synaptic vesicle prote 31.4 4.5E+02 0.0097 24.7 12.0 39 151-189 89-127 (233)
90 PRK12847 ubiA 4-hydroxybenzoat 31.3 4.4E+02 0.0094 24.6 13.2 16 141-156 179-194 (285)
91 PF06645 SPC12: Microsomal sig 30.4 1.8E+02 0.0039 22.4 5.8 42 243-284 5-46 (76)
92 PLN02922 prenyltransferase 28.9 5.3E+02 0.012 24.8 12.2 18 139-156 200-217 (315)
93 PRK04214 rbn ribonuclease BN/u 27.4 3.1E+02 0.0068 27.2 8.3 15 157-171 201-215 (412)
94 PRK07419 1,4-dihydroxy-2-napht 26.9 5.7E+02 0.012 24.5 13.2 17 140-156 187-203 (304)
95 PRK12873 ubiA prenyltransferas 26.8 1.8E+02 0.0038 28.0 6.2 43 214-256 56-102 (294)
96 PRK12848 ubiA 4-hydroxybenzoat 26.7 2E+02 0.0043 26.9 6.5 44 215-258 55-102 (282)
97 PRK05951 ubiA prenyltransferas 26.5 5.5E+02 0.012 24.2 13.6 46 214-259 52-104 (296)
98 TIGR00751 menA 1,4-dihydroxy-2 24.7 5.1E+02 0.011 24.5 8.9 57 213-269 39-101 (284)
99 PRK01637 hypothetical protein; 24.4 5.8E+02 0.013 23.8 11.0 12 82-93 77-88 (286)
100 PF04341 DUF485: Protein of un 24.0 3.6E+02 0.0077 21.1 7.6 73 84-156 7-87 (91)
101 PRK10581 geranyltranstransfera 21.5 1.3E+02 0.0029 28.6 4.3 49 210-258 211-270 (299)
102 PRK08238 hypothetical protein; 21.2 4E+02 0.0087 27.3 7.9 47 214-260 238-288 (479)
No 1
>PLN02878 homogentisate phytyltransferase
Probab=100.00 E-value=2.3e-46 Score=349.17 Aligned_cols=184 Identities=78% Similarity=1.232 Sum_probs=177.0
Q ss_pred HHHHHHHHhhcccCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhccc-----------------------------
Q 022970 106 SIVSVALLAVEKVSDISPLFFTGVLEAIAAALMMNIYIVGLNQLSDIEIDK----------------------------- 156 (289)
Q Consensus 106 ~vl~g~llA~~~~~~~~~~~~~~~l~~lva~l~~n~~~ngiNDyfD~EIDk----------------------------- 156 (289)
++++.+++|+++.+|+++.++.++++++++|+|||+|++|+|||||+||||
T Consensus 2 ~~~~~~l~a~~~~~~~~~~~~~~~l~~~~~~l~~niyivglNd~~D~EIDkINkP~rPIpSG~iS~~~a~~~~~~~~~lg 81 (280)
T PLN02878 2 GITSVSLLAVESLSDFSPLFFTGLLEALVPALLMNIYIVGLNQLYDIEIDKVNKPYLPLASGEFSVATGVAIVTSFAIMS 81 (280)
T ss_pred chhHHhHHHhhccccccHHHHHHHHHHHHHHHhhhhheechhhhhhhcccccCCCCCCCCCCCCCHHHHHHHHHHHHHHH
Confidence 577889999999899988899999999999999999999999999999999
Q ss_pred -----------------------------ccchhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcchHHHHH
Q 022970 157 -----------------------------LPLLRWKRFAVAAAMCILAVRAVVVQLAFYLHMQTHVYRRPAVFSKPLIFA 207 (289)
Q Consensus 157 -----------------------------lPplRlKr~p~laa~~Il~v~a~iv~lg~~l~~~t~~~g~p~~~~~~V~~l 207 (289)
+||+||||+++++++|+++++++++++|+|+|+++.++|+|..+++++++.
T Consensus 82 ~~la~~~g~~~l~~al~~~~~lg~~YS~~lp~lr~k~~~~~aa~~i~~vr~~~v~l~~~~h~~~~~~g~~~~~~~~~~~~ 161 (280)
T PLN02878 82 FGMGWIVGSWPLFWALFVSFVLGTAYSINLPLLRWKRSAVAAASCILAVRAVVVQLAFFLHMQTHVLGRPAVFTRPLIFA 161 (280)
T ss_pred HHHHHHHChHHHHHHHHHHHHHHHHHHccCCCcccHHHHHHHHHHHHHHHHHHhhhhHHHhHHHHHhCCccccchhHHHH
Confidence 699999999999999999999999999999999999999988889999999
Q ss_pred HHHHHHHHHHHHHHhcCCChhhhHhcCCccchhhhChHHHHHHHHHHHHHHHHHHHHHHHhCchhhHHHHHHHHHHHHHh
Q 022970 208 TAFMSFFSVVIALFKDVPDLEGDKTFGIRTFTVRLGQKRVFWTCISLLEVAYTVAILVGATSPFAWSKLITDLGRSILAL 287 (289)
Q Consensus 208 t~f~~~f~~~i~i~KDi~DieGDr~~Gi~Tl~i~lG~k~a~~l~~~ll~~ay~~~i~~~~~~~~~~~~~~~~~~h~~l~~ 287 (289)
+.|+++|+++|+++||+||+||||++|+||+|+++|+|++.++|.+++.+||++++++|++++..|++++|++||+++++
T Consensus 162 ~~f~~~f~~~i~i~KDi~DieGD~~~Gi~Tlpv~lG~~~~~~i~~~ll~~aY~~~i~~g~~~~~~~~~~~~~~~h~~l~~ 241 (280)
T PLN02878 162 TAFMCFFSVVIALFKDIPDVEGDRIFGIRSFSVRLGQKRVFWLCVNLLEMAYAAAILVGASSSFLWSKIITVLGHGILAS 241 (280)
T ss_pred HHHHHHHHHHHHHHhhCcCchhHHHCCCceechhhChHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred cC
Q 022970 288 IL 289 (289)
Q Consensus 288 ~l 289 (289)
+|
T Consensus 242 ~L 243 (280)
T PLN02878 242 IL 243 (280)
T ss_pred HH
Confidence 64
No 2
>PRK12887 ubiA tocopherol phytyltransferase; Reviewed
Probab=100.00 E-value=8.3e-42 Score=322.26 Aligned_cols=212 Identities=41% Similarity=0.649 Sum_probs=192.7
Q ss_pred CCCCchhhHHHHHHHHhhhccchhHHHHHHHHHHHHHhhcccCCC-ChHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcc
Q 022970 77 PKSPLNSVINALDAFYRFSRPHTVIGTALSIVSVALLAVEKVSDI-SPLFFTGVLEAIAAALMMNIYIVGLNQLSDIEID 155 (289)
Q Consensus 77 ~~~~~~~~~~~l~a~~~l~RPht~igt~l~vl~g~llA~~~~~~~-~~~~~~~~l~~lva~l~~n~~~ngiNDyfD~EID 155 (289)
|++.|++++.++++|||++||||++|+.++++.++++|.+..++. +...+..++.+++++.++|+|++++|||||+|+|
T Consensus 2 ~~~~~~~~~~~l~~~~~l~Rp~t~igt~l~~~~~~l~a~~~~~~~~~~~~~~~~l~~~~~~~~~nv~i~~iNd~~D~~iD 81 (308)
T PRK12887 2 PKNPLQPMTSWLYALWKFSRPHTIIGTSLSVLGLYLIAIAASSNTIALANLGLLLGAWIACLCGNVYIVGLNQLTDIEID 81 (308)
T ss_pred CcchhhhhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHH
Confidence 789999999999999999999999999999999999886543322 2235677788899999999999999999999999
Q ss_pred c-------------------------------------------------------ccchhhhHhHHHHHHHHHHHHHHH
Q 022970 156 K-------------------------------------------------------LPLLRWKRFAVAAAMCILAVRAVV 180 (289)
Q Consensus 156 k-------------------------------------------------------lPplRlKr~p~laa~~Il~v~a~i 180 (289)
| .||.|+||.|+..+.|++.+++.+
T Consensus 82 ~inkp~rPiasG~ls~~~a~~~~~~~~~lal~la~~~~~~~~~~~~~~~~lg~~Ys~pP~rlKr~~~~~~~~i~~~~g~i 161 (308)
T PRK12887 82 RINKPHLPLAAGEFSRRQGQRIVIITGILALILAALLGPWLLITVGISLLIGTAYSLPPIRLKRFPLLAALCIFTVRGVI 161 (308)
T ss_pred hcCCCCCCcCCcccCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHcCCchhhcccchhHHHHHHHHHHHH
Confidence 8 899999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHHHHHhcCCChhhhHhcCCccchhhhChHHHHHHHHHHHHHHHH
Q 022970 181 VQLAFYLHMQTHVYRRPAVFSKPLIFATAFMSFFSVVIALFKDVPDLEGDKTFGIRTFTVRLGQKRVFWTCISLLEVAYT 260 (289)
Q Consensus 181 v~lg~~l~~~t~~~g~p~~~~~~V~~lt~f~~~f~~~i~i~KDi~DieGDr~~Gi~Tl~i~lG~k~a~~l~~~ll~~ay~ 260 (289)
+++|.|+|++.. .+++..++..+++++.++++++++++++||+||+||||+.|+||+|+++|+|++.+++.+++.++|+
T Consensus 162 ~~~g~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~l~~di~D~egD~~~Gi~Tlav~lG~~~a~~l~~~ll~~~y~ 240 (308)
T PRK12887 162 VNLGLFLHFQWL-LGGSVLIPPTVWLLTLFVLVFTFAIAIFKDIPDMEGDRQYQITTFTLRLGKQAVFKLSCWVLTACYL 240 (308)
T ss_pred HHHHHHHHHHHH-HhccccCcHHHHHHHHHHHHHHHHHHHHHhccchhhHHHcCCcchhHHHhHHHHHHHHHHHHHHHHH
Confidence 999999987654 4445567788888899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCchhhHHHHHHHHHHHHHhcC
Q 022970 261 VAILVGATSPFAWSKLITDLGRSILALIL 289 (289)
Q Consensus 261 ~~i~~~~~~~~~~~~~~~~~~h~~l~~~l 289 (289)
++++.++.+...+++.++++||+++++++
T Consensus 241 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (308)
T PRK12887 241 GMIAVGLLSLPTVNPAFLIVSHLILLALL 269 (308)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999998763
No 3
>PRK13595 ubiA prenyltransferase; Provisional
Probab=99.92 E-value=3.9e-24 Score=201.39 Aligned_cols=176 Identities=20% Similarity=0.186 Sum_probs=112.9
Q ss_pred hHHHHHHHHhhhccchhHHHHHHHHHHHHHhhcccCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhccc-------
Q 022970 84 VINALDAFYRFSRPHTVIGTALSIVSVALLAVEKVSDISPLFFTGVLEAIAAALMMNIYIVGLNQLSDIEIDK------- 156 (289)
Q Consensus 84 ~~~~l~a~~~l~RPht~igt~l~vl~g~llA~~~~~~~~~~~~~~~l~~lva~l~~n~~~ngiNDyfD~EIDk------- 156 (289)
....++.+++.+||.+|+.++.++.+|+..+.+ ..|+.+..+ +..+..++..|.+.|++|||||+|+|+
T Consensus 8 ~~~~l~~ll~~sRP~~wi~t~~~~~~G~~~~g~-~~~~~~~~~---~l~~~~~~p~n~~~~giND~fD~eiDa~Npr~~~ 83 (292)
T PRK13595 8 ILLPLRRLLLISRPALWVNTVGTLVTGVWLTGH-LYTLDPGVL---PLLLYLTLPFNLLIYGLNDLADRETDAASPRKGG 83 (292)
T ss_pred hhhHHHHHHHHhCcHHHHHHHHHHHHHHHHhcC-cccchhHHH---HHHHHHHHHHHHHHHHHHhhhhhhhhccCCCCCC
Confidence 456788899999999999999999999976622 223222322 334555566799999999999999999
Q ss_pred ccchhhhHhHHHH--HHHHHHH------HHH-----------HHHHHHHHHHH--HHHhcCCCCc---------------
Q 022970 157 LPLLRWKRFAVAA--AMCILAV------RAV-----------VVQLAFYLHMQ--THVYRRPAVF--------------- 200 (289)
Q Consensus 157 lPplRlKr~p~la--a~~Il~v------~a~-----------iv~lg~~l~~~--t~~~g~p~~~--------------- 200 (289)
+|.+|+++..... ..+.+.. .+. +..+..+.|.. ..++.+|...
T Consensus 84 i~~G~is~~~~~~~~~~~~~~~~~~~l~la~~l~~~~~~l~~v~~~l~~~YS~pPlRlK~rp~l~~l~~~~~g~p~~~~~ 163 (292)
T PRK13595 84 WQGARLSPGEVRPLLRAVLLLNAPFLLYLALLLPPAATLLLLLYAALFVGYSLPPLRFKARPFLDGLSNAAYALPLALPA 163 (292)
T ss_pred CCcCccCHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHccCccchhcCcchhHHHHHHHHHHHHHHH
Confidence 7777776663221 1111100 000 00011111210 0112222211
Q ss_pred ----chHHHHHHHHHHHHHHHHHHHhcCCChhhhHhcCCccchhhhChHHHHHHHHHHHHHHHHHHH
Q 022970 201 ----SKPLIFATAFMSFFSVVIALFKDVPDLEGDKTFGIRTFTVRLGQKRVFWTCISLLEVAYTVAI 263 (289)
Q Consensus 201 ----~~~V~~lt~f~~~f~~~i~i~KDi~DieGDr~~Gi~Tl~i~lG~k~a~~l~~~ll~~ay~~~i 263 (289)
....+.......+|++++|++||+||+||||+.|+||+|+++|+|++.++|..+..++-+...
T Consensus 164 ~~~g~~~~~~~l~a~~~w~~g~dii~ai~DiegDr~~Gi~Slpv~lG~r~a~~~a~~~~~~a~~~~~ 230 (292)
T PRK13595 164 LALGAPVPWPPLLALMAWSVGKHAFDAAQDIPADRAAGTRTVATTLGVRGTALYALAWFLLAGALLW 230 (292)
T ss_pred HHcCCcchHHHHHHHHHHHHHHHHHHhccChHhHHHcCCeechHHhCcHhHHHHHHHHHHHHHHHHH
Confidence 011111123445678999999999999999999999999999999999999887776655443
No 4
>TIGR01476 chlor_syn_BchG bacteriochlorophyll/chlorophyll synthetase. This model describes a subfamily of a large family of polyprenyltransferases (pfam01040) that also includes 4-hydroxybenzoate octaprenyltransferase and protoheme IX farnesyltransferase (heme O synthase). Members of this family are found exclusively in photosynthetic organisms, including a single copy in Arabidopsis thaliana.
Probab=99.91 E-value=6.2e-24 Score=197.02 Aligned_cols=178 Identities=17% Similarity=0.154 Sum_probs=118.2
Q ss_pred HHHHhhhccchhHHHHHHHHHHHHHhhcccCC-CChHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhccc-------ccch
Q 022970 89 DAFYRFSRPHTVIGTALSIVSVALLAVEKVSD-ISPLFFTGVLEAIAAALMMNIYIVGLNQLSDIEIDK-------LPLL 160 (289)
Q Consensus 89 ~a~~~l~RPht~igt~l~vl~g~llA~~~~~~-~~~~~~~~~l~~lva~l~~n~~~ngiNDyfD~EIDk-------lPpl 160 (289)
++|+|++||+|+..+.+++++|+++|...... +++ ...++.+++++.++++++|.+|||||+|+|+ +|.+
T Consensus 1 ~~~~~l~rp~t~~~~~~~~~~G~~~a~~~~~~~~~~--~~~ll~~~~~~~l~~~~~n~~Nd~~D~~~D~~~~~~Rpi~~G 78 (283)
T TIGR01476 1 RAHIELMKPVTWIPPIWACFCGALASGYERGFPEHW--WLMLLGMLMAGPLGTGFSQSINDYFDRDVDAINEPQRPIPSG 78 (283)
T ss_pred CceeEecCCceehhHHHHHHHHHHhccCCCCcchhH--HHHHHHHHHHHHHHHHHHHHHHhHhhhCcccCCCCCCCCCCC
Confidence 46899999999999999999999887322222 222 2234456778888999999999999999999 7788
Q ss_pred hhhHhHHHHHHHHHHHHHHHH----------HH---HHH-HHHHH----HHhcCCCCcc---------------------
Q 022970 161 RWKRFAVAAAMCILAVRAVVV----------QL---AFY-LHMQT----HVYRRPAVFS--------------------- 201 (289)
Q Consensus 161 RlKr~p~laa~~Il~v~a~iv----------~l---g~~-l~~~t----~~~g~p~~~~--------------------- 201 (289)
+++.........++.+.++++ .+ +.+ .+.++ .++.++...+
T Consensus 79 ~is~~~a~~~~~~~~~~~~~l~~~l~~~~~~~l~~~~~~~~~~Ys~~p~~lk~~~~~g~~~vg~~~~~~~~~~~~~~~~~ 158 (283)
T TIGR01476 79 IISLREVRWNWLVLTVAGLLVALVLGNWLIVLFTVVGIVLAVIYSMPPIKLKRNGWLGPPAVGLSYEGLPWMAGHAIFAP 158 (283)
T ss_pred CcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhheecCchhhhccCCCccHHHHHHHHHHHHHHHHHHHhCC
Confidence 886664333222221111111 00 000 01111 1111111111
Q ss_pred --hHHHHHHHHHHHHHHHHHHHhcCCChhhhHhcCCccchhhhChHHHHHHHHHHHHHHHHHHHHHHHh
Q 022970 202 --KPLIFATAFMSFFSVVIALFKDVPDLEGDKTFGIRTFTVRLGQKRVFWTCISLLEVAYTVAILVGAT 268 (289)
Q Consensus 202 --~~V~~lt~f~~~f~~~i~i~KDi~DieGDr~~Gi~Tl~i~lG~k~a~~l~~~ll~~ay~~~i~~~~~ 268 (289)
...+++....++++.+++..||++|+||||+.|+||+|+++|+|++.+++..++.++|+..+.....
T Consensus 159 ~~~~~~~~~~~~~l~~~~i~~~nd~~D~~~D~~~G~~Tl~v~lG~~~a~~l~~~l~~~~~~~~~~~~~~ 227 (283)
T TIGR01476 159 LTWQSVVVALIYSLGAHGIMTLNDFKSVEGDRQLGLRSLPVMIGVKRAAIVAVTTINVFQAMVIGLLLI 227 (283)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHhccchhhHHHcCCcCcceEEcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1111222334456778999999999999999999999999999999999999999999877754444
No 5
>PRK13105 ubiA prenyltransferase; Reviewed
Probab=99.91 E-value=1.4e-23 Score=196.67 Aligned_cols=174 Identities=22% Similarity=0.250 Sum_probs=109.5
Q ss_pred HHHHHhhhccchhHHHHHHHHHHHHHhhcccCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhccc------ccchh
Q 022970 88 LDAFYRFSRPHTVIGTALSIVSVALLAVEKVSDISPLFFTGVLEAIAAALMMNIYIVGLNQLSDIEIDK------LPLLR 161 (289)
Q Consensus 88 l~a~~~l~RPht~igt~l~vl~g~llA~~~~~~~~~~~~~~~l~~lva~l~~n~~~ngiNDyfD~EIDk------lPplR 161 (289)
+|.+++.+||++|+.+++++.+|+++| ++. .++.++.. ++.....-|.+.|++|||||.|.|+ -|.++
T Consensus 1 ~~~~~~~~rP~~wi~~a~pf~~g~~la-~~~--~~~~~l~~---~l~~~~~~n~am~~~Ndy~D~~~d~dn~r~~g~~g~ 74 (282)
T PRK13105 1 IRQLLLSSRPISWINTAYPFAAAYLLA-GGE--IDWLFVVG---TVFFLIPYNLAMYGINDVFDYESDLRNPRKGGVEGA 74 (282)
T ss_pred ChhHHHhcccHHHhccHHHHHHHHHHH-CCC--CChHHHHH---HHHHHHHHHHHHHhhhhhhhhhcCCCCcccCCCCCc
Confidence 367899999999999999999999999 322 22322222 2222334577778889999999998 12222
Q ss_pred hhH-----hHHHHHH--HH-HHHHHHHH-H-----------HHHHHHHHH--HHhcCCC---------------------
Q 022970 162 WKR-----FAVAAAM--CI-LAVRAVVV-Q-----------LAFYLHMQT--HVYRRPA--------------------- 198 (289)
Q Consensus 162 lKr-----~p~laa~--~I-l~v~a~iv-~-----------lg~~l~~~t--~~~g~p~--------------------- 198 (289)
+++ ..+.... ++ +....... + +..+.|... .++.+|.
T Consensus 75 i~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~l~~~ai~~~~~YS~~p~rlk~~gl~d~~t~~~~f~~~~v~G~~~~ 154 (282)
T PRK13105 75 VLDRAMHRTTLWASVVTTVPFLVVLLAVGSWASGLVLAVSVFAVVAYSAPGLRFKERPFLDSLTSSTHFVSPALYGLVLA 154 (282)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcCCCccccccchHHHHHHHHHHHHHHHHHHHHh
Confidence 222 2111111 11 00000000 0 011111100 0000111
Q ss_pred --CcchHHHHHHHHHHHHHHHHHHHhcCCChhhhHhcCCccchhhhChHHHHHHHHHHHHHHHHHHHHHHH
Q 022970 199 --VFSKPLIFATAFMSFFSVVIALFKDVPDLEGDKTFGIRTFTVRLGQKRVFWTCISLLEVAYTVAILVGA 267 (289)
Q Consensus 199 --~~~~~V~~lt~f~~~f~~~i~i~KDi~DieGDr~~Gi~Tl~i~lG~k~a~~l~~~ll~~ay~~~i~~~~ 267 (289)
..+...+++...+.+++.+++++||+||+||||+.|+||+|+++|+|++.+++..+..++++..+..+.
T Consensus 155 ~~~~~~~~~l~~~~~~~~~~a~~ii~~irDie~Dr~~G~~Tlpv~lG~~~a~~~~~~l~~~a~~~~~~~~~ 225 (282)
T PRK13105 155 GAPFTAALWAVLAAFFLWGMASHAFGAVQDVVADREAGIASIATVLGARRTVRLAVGLYAAAAVLMLALPW 225 (282)
T ss_pred hccccHHHHHHHHHHHHHHHHHHHHHhCcchHhHHHcCCccchHHhcHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 122233445556667789999999999999999999999999999999999999999999988886653
No 6
>TIGR02056 ChlG chlorophyll synthase, ChlG. This model represents the strictly cyanobacterial and plant-specific chlorophyll synthase ChlG. ChlG is the enzyme (esterase) which attaches the side chain moiety onto chlorophyllide a. Both geranylgeranyl and phytyl pyrophosphates are substrates to varying degrees in enzymes from different sources. Thus, ChlG may act as the final or penultimate step in chlorophyll biosynthesis (along with the geranylgeranyl reductase, ChlP).
Probab=99.91 E-value=1e-22 Score=192.01 Aligned_cols=181 Identities=17% Similarity=0.257 Sum_probs=120.9
Q ss_pred hhHHHHHHHHhhhccchhHHHHHHHHHHHHHhhcccCCCChHH---HHHHHHHHHHHHHHHHHHhhhhhhhhhhccc---
Q 022970 83 SVINALDAFYRFSRPHTVIGTALSIVSVALLAVEKVSDISPLF---FTGVLEAIAAALMMNIYIVGLNQLSDIEIDK--- 156 (289)
Q Consensus 83 ~~~~~l~a~~~l~RPht~igt~l~vl~g~llA~~~~~~~~~~~---~~~~l~~lva~l~~n~~~ngiNDyfD~EIDk--- 156 (289)
..+++++.|+|++||+|++.+.+++++|+..+ + .+++.. ...++.+++++.+++++.|.+|||||+|+|+
T Consensus 11 ~~~~~~~~~~~l~RP~~~~~~~~~~~~G~~~~-~---~~~~~~~~~~~~ll~~ll~~~l~~~~~n~~NDy~D~d~D~~~~ 86 (306)
T TIGR02056 11 GETNIWKIRLQLMKPITWIPLIWGVVCGAAAS-G---NFHWSLEDVAKAALCMLLSGPCLTGYTQTINDFYDRDIDAINE 86 (306)
T ss_pred cchhHHHHHHHHcChHhhHHHHHHHHHHHHHc-C---CCCcchhhHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhccCC
Confidence 45677899999999999999999999999853 2 233221 1223445677788899999999999999999
Q ss_pred ----ccchhhhHhHHHHHHHHHHHHH----H------------HHHHH------HHHHHH-HHHhcCCC-----------
Q 022970 157 ----LPLLRWKRFAVAAAMCILAVRA----V------------VVQLA------FYLHMQ-THVYRRPA----------- 198 (289)
Q Consensus 157 ----lPplRlKr~p~laa~~Il~v~a----~------------iv~lg------~~l~~~-t~~~g~p~----------- 198 (289)
+|++|++.........++...+ + .+.++ .+.|.. ..-+|+..
T Consensus 87 ~~Rpi~~G~is~~~a~~~~~~l~~~~~~lg~~l~~~~~~~~~~~~~l~~~~~~~~~~Yt~gP~~lk~~g~~G~i~vg~~~ 166 (306)
T TIGR02056 87 PYRPIPSGAISEPEVITQIVLLFIAGIAIAFILDLWAGHEFPNVFVLALFGSFIAFIYSAPPLKLKQNGWLGNFALGASY 166 (306)
T ss_pred CCCCCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHcCChhhhhhcccHHHHHHHHHH
Confidence 7788886664332221111110 0 01111 112210 01122111
Q ss_pred -------------CcchHHHHHHHHHHHHHHHHHHHhcCCChhhhHhcCCccchhhhChHHHHHHHHHHHHHHHHHHHHH
Q 022970 199 -------------VFSKPLIFATAFMSFFSVVIALFKDVPDLEGDKTFGIRTFTVRLGQKRVFWTCISLLEVAYTVAILV 265 (289)
Q Consensus 199 -------------~~~~~V~~lt~f~~~f~~~i~i~KDi~DieGDr~~Gi~Tl~i~lG~k~a~~l~~~ll~~ay~~~i~~ 265 (289)
.++...+++...+++++.++++.||++|+||||+.|+||+|+++|+|++.+++..++..+|+..+..
T Consensus 167 ~~~~~~~~~a~~g~~~~~~~l~~~~~~l~~~~i~~~n~~~D~e~D~~~G~~Tlpv~lG~~~a~~~~~~l~~~~~~~~~~~ 246 (306)
T TIGR02056 167 IALPWWAGHALFGELNPDIAVLTLIYSIAGLGIAIVNDFKSVEGDRALGLQSLPVAFGIETAAWICVGAIDIFQGLIAAY 246 (306)
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHccChHHHHHcCCcCcchhcChHHHHHHHHHHHHHHHHHHHHH
Confidence 1112222334455668889999999999999999999999999999999999998888888765554
Q ss_pred HH
Q 022970 266 GA 267 (289)
Q Consensus 266 ~~ 267 (289)
..
T Consensus 247 ~~ 248 (306)
T TIGR02056 247 LL 248 (306)
T ss_pred HH
Confidence 43
No 7
>PLN00012 chlorophyll synthetase; Provisional
Probab=99.90 E-value=2.9e-22 Score=194.37 Aligned_cols=178 Identities=16% Similarity=0.261 Sum_probs=119.0
Q ss_pred hhhHHHHHHHHhhhccchhHHHHHHHHHHHHHhhcccCCCChHH---HHHHHHHHHHHHHHHHHHhhhhhhhhhhccc--
Q 022970 82 NSVINALDAFYRFSRPHTVIGTALSIVSVALLAVEKVSDISPLF---FTGVLEAIAAALMMNIYIVGLNQLSDIEIDK-- 156 (289)
Q Consensus 82 ~~~~~~l~a~~~l~RPht~igt~l~vl~g~llA~~~~~~~~~~~---~~~~l~~lva~l~~n~~~ngiNDyfD~EIDk-- 156 (289)
+.-+++++.|++++||+||+...+++++|+..+ + .+++.. ...++.+++++.++++++|.+|||||+|+|+
T Consensus 79 ~~~~~~~k~~l~L~RP~t~~~~~~~v~~G~~~~-g---~~~~~~~~~~~~ll~~ll~~~L~~~~an~iNDy~D~~iD~~~ 154 (375)
T PLN00012 79 AQETDIWKIRLQLTKPVTWPPLVWGVLCGAAAS-G---NFHWTLEDVAKSIVCMLMSGPFLTGYTQTINDWYDREIDAIN 154 (375)
T ss_pred ccchHHHHHHHHHhCHHHHHHHHHHHHHHHHHc-C---CCCchhhhHHHHHHHHHHHHHHHHHHHHHHHCeecHhhhccC
Confidence 345677899999999999999999999999742 2 233221 2233566777788889999999999999999
Q ss_pred -----ccchhhhHhHHHHHHHHHHH----HHHH------------HHH------HHHHHHH-HHHhcC-CC---------
Q 022970 157 -----LPLLRWKRFAVAAAMCILAV----RAVV------------VQL------AFYLHMQ-THVYRR-PA--------- 198 (289)
Q Consensus 157 -----lPplRlKr~p~laa~~Il~v----~a~i------------v~l------g~~l~~~-t~~~g~-p~--------- 198 (289)
+|++++++...+....++.. .++. ..+ ..|+|.. ...+|+ +.
T Consensus 155 ~~~Rpi~sG~Is~~~al~~~~~l~~~~l~l~~~L~~~~~~~~~~~~~l~l~gi~l~~~YS~pPl~lKr~~~~G~v~lG~~ 234 (375)
T PLN00012 155 EPYRPIPSGAISENEVITQIWVLLLGGLGLAYTLDVWAGHDFPIVFYLALGGSLLSYIYSAPPLKLKQNGWIGNYALGAS 234 (375)
T ss_pred CCCCCcCCCccCHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHhhhhcCCchhhhHhccHhHHHHHHH
Confidence 88888866643331111100 0000 000 1112210 011111 11
Q ss_pred --------------CcchHHHHHHHHHHHHHHHHHHHhcCCChhhhHhcCCccchhhhChHHHHHHHHHHHHHHHHHHH
Q 022970 199 --------------VFSKPLIFATAFMSFFSVVIALFKDVPDLEGDKTFGIRTFTVRLGQKRVFWTCISLLEVAYTVAI 263 (289)
Q Consensus 199 --------------~~~~~V~~lt~f~~~f~~~i~i~KDi~DieGDr~~Gi~Tl~i~lG~k~a~~l~~~ll~~ay~~~i 263 (289)
.++...+++..+++++++++++.||++|+||||+.|++|+|+++|++++.+++..++.+.++..+
T Consensus 235 ~~~lp~~~g~a~~g~~s~~~illal~~~l~~lai~ivnd~~Die~Dr~aG~~TLpV~~G~~~a~~l~~~~l~l~~l~~~ 313 (375)
T PLN00012 235 YISLPWWAGQALFGTLTPDVVVLTLLYSIAGLGIAIVNDFKSIEGDRALGLQSLPVAFGVETAKWICVGSIDITQLSVA 313 (375)
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHcCCcccceeechHHHHHHHHHHHHHHHHHHH
Confidence 11122233444566788899999999999999999999999999999999999877777766544
No 8
>PRK07566 bacteriochlorophyll/chlorophyll a synthase; Reviewed
Probab=99.89 E-value=1.5e-21 Score=184.64 Aligned_cols=179 Identities=17% Similarity=0.176 Sum_probs=117.9
Q ss_pred HHHHHHHHhhhccchhHHHHHHHHHHHHHhhcccCCCChH-HHHHHHHHHHHHHHHHHHHhhhhhhhhhhccc-------
Q 022970 85 INALDAFYRFSRPHTVIGTALSIVSVALLAVEKVSDISPL-FFTGVLEAIAAALMMNIYIVGLNQLSDIEIDK------- 156 (289)
Q Consensus 85 ~~~l~a~~~l~RPht~igt~l~vl~g~llA~~~~~~~~~~-~~~~~l~~lva~l~~n~~~ngiNDyfD~EIDk------- 156 (289)
++++++|++++||+|++.+.++++.|++.+. . .++... .+..++.++++..++++++|.+|||+|+|+|+
T Consensus 24 ~~~~~~~~~l~RP~~~~~~~~~~~~g~~~~~-~-~~~~~~~~~~~~l~~~l~~~l~~~~~~~~Nd~~D~~~D~~~~~~Rp 101 (314)
T PRK07566 24 TSIWKARLQLMKPITWFPPMWAFLCGAVSSG-A-FGWTLENVLKLLAGMLLAGPLLCGTSQTLNDYFDREVDAINEPYRP 101 (314)
T ss_pred chHHHHHHHHhCCcchHHHHHHHHHHHHHcC-C-CCcchhHHHHHHHHHHHHHHHHHHHHHHHhhhhccCccccCCCCCC
Confidence 4678999999999999999999999887542 1 223221 12223445666777889999999999999999
Q ss_pred ccchhhhHhHHHHHHHHHHHHHHHH---------HHH---HH-HHHHH---HHhcC-CCC--------------------
Q 022970 157 LPLLRWKRFAVAAAMCILAVRAVVV---------QLA---FY-LHMQT---HVYRR-PAV-------------------- 199 (289)
Q Consensus 157 lPplRlKr~p~laa~~Il~v~a~iv---------~lg---~~-l~~~t---~~~g~-p~~-------------------- 199 (289)
+|++++++........++.+.++++ .++ +. .+.++ ..+|+ +..
T Consensus 102 l~sG~is~~~a~~~~~~l~~~~~~l~~~l~~~~~~l~l~~~~~~~~Yt~gP~~lK~~~~~g~i~vg~~~g~~~~~~g~~~ 181 (314)
T PRK07566 102 IPSGAISLRWVLYLIAVLTVLGLAVAYLLGPWVFLAALLGLFLAWIYSAPPLRLKQNGWLGNYAVGLSYEGLPWWAGAAA 181 (314)
T ss_pred CCCceeCHHHHHHHHHHHHHHHHHHHHHHChHHHHHHHHHHHHHHHhcCCccccccccchhhHHHHHHHHHHHHHHHHHH
Confidence 7888887665433222221111111 000 00 11112 01222 111
Q ss_pred -----cchHHHHHHHHHHHHHHHHHHHhcCCChhhhHhcCCccchhhhChHHHHHHHHHHHHHHHHHHHHH
Q 022970 200 -----FSKPLIFATAFMSFFSVVIALFKDVPDLEGDKTFGIRTFTVRLGQKRVFWTCISLLEVAYTVAILV 265 (289)
Q Consensus 200 -----~~~~V~~lt~f~~~f~~~i~i~KDi~DieGDr~~Gi~Tl~i~lG~k~a~~l~~~ll~~ay~~~i~~ 265 (289)
++...+++....++++.++...||++|+|+||+.|+||+|+++|++++.++...++.++|+..+..
T Consensus 182 ~~~~~~~~~~~l~~~~~~l~~~~~~~~~d~~D~e~D~~aG~~Tlpv~~G~~~a~~l~~~l~~~~~~~~~~~ 252 (314)
T PRK07566 182 FGAGLPSWPIVILALLYSLGAHGIMTLNDFKSVEGDRQLGLRSLPVVFGEKNAARIACVVIDLFQLAVIAL 252 (314)
T ss_pred hccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHcCCcccceeEcHHHHHHHHHHHHHHHHHHHHHH
Confidence 111222233344456678899999999999999999999999999999999999999998876443
No 9
>PRK12392 bacteriochlorophyll c synthase; Provisional
Probab=99.89 E-value=2.4e-21 Score=185.10 Aligned_cols=187 Identities=15% Similarity=0.280 Sum_probs=119.1
Q ss_pred hHHHHHHHHhhhccchhHHHHHHHHHHHHHhhccc-CCCChHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhccc------
Q 022970 84 VINALDAFYRFSRPHTVIGTALSIVSVALLAVEKV-SDISPLFFTGVLEAIAAALMMNIYIVGLNQLSDIEIDK------ 156 (289)
Q Consensus 84 ~~~~l~a~~~l~RPht~igt~l~vl~g~llA~~~~-~~~~~~~~~~~l~~lva~l~~n~~~ngiNDyfD~EIDk------ 156 (289)
..+++|+|+|+.||+|++ ..++++.|..+|.+.. +++....+ .+..+++.+.++..+++.+|||||+|+|+
T Consensus 8 ~~~~~k~~l~L~kP~t~l-~~~p~~~g~~lA~g~~~~~~~~~~l-~l~~~~~~~~L~~~a~~~iND~~D~~~D~~n~rtR 85 (331)
T PRK12392 8 FVDKIRAHLELLDPVTWI-SVFPCLAGGVMASGAMQPTLHDYLL-LLALFLMYGPLGTGFSQSVNDYFDLELDRVNEPTR 85 (331)
T ss_pred hhHHHHHHHHHHCHHHHH-HHHHHHHHHHHHcCCCCCChhHHHH-HHHHHHHHHHHHHHHHhHHhcceeecccccCCCCC
Confidence 456799999999999999 6666667766774321 22221111 11222333334456789999999999999
Q ss_pred -ccchhhhHhHHHHHHHHHHHHHH----HH-------------------HHHHHHHHH-HH-HhcCCCC-----------
Q 022970 157 -LPLLRWKRFAVAAAMCILAVRAV----VV-------------------QLAFYLHMQ-TH-VYRRPAV----------- 199 (289)
Q Consensus 157 -lPplRlKr~p~laa~~Il~v~a~----iv-------------------~lg~~l~~~-t~-~~g~p~~----------- 199 (289)
+|++|+++...+....++...++ .+ .+..++|.. .+ +++.+..
T Consensus 86 pl~~G~is~~~al~~~~~l~~la~~lg~~L~~~~~~~~~~~il~~~~~~l~l~~~YS~~P~~lKr~~~~g~~~vGl~~~~ 165 (331)
T PRK12392 86 PIPSGRLSEKEALWNSIIVLLLAIGLGVWLGLHIGGERGMVIISSILAGLFVAYIYSAPPLKLKKNILTSAPAVGFSYGF 165 (331)
T ss_pred CCCcCCcCHHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHhhhhcCCchhhhccchhHHHHHHHHHHH
Confidence 78888876643332221111111 00 001112210 00 1111111
Q ss_pred ------------cchHHHHHHHHHHHHHHHHHHHhcCCChhhhHhcCCccchhhhChHHHHHHHHHHHHHHHHHHHHHHH
Q 022970 200 ------------FSKPLIFATAFMSFFSVVIALFKDVPDLEGDKTFGIRTFTVRLGQKRVFWTCISLLEVAYTVAILVGA 267 (289)
Q Consensus 200 ------------~~~~V~~lt~f~~~f~~~i~i~KDi~DieGDr~~Gi~Tl~i~lG~k~a~~l~~~ll~~ay~~~i~~~~ 267 (289)
.+..++++....++++++++++||++|+||||+.|+||+|+++|++++.+++.....+..++.+..+.
T Consensus 166 ~~~~~~~a~~g~~~~~~~~l~~~~~l~~~~~~~i~d~~D~egD~~~G~kTlpV~~G~~~a~~i~~~~~~~~~~~~~~~~~ 245 (331)
T PRK12392 166 ITFLSANALFSDIRPEVVWLAGLNFFMAIALIIMNDFKSVEGDKEGGLKSLTVMIGAKNTFLVSFIIIDLVFAVFAWLAW 245 (331)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHcccchhhHHHcCCeeeEeEEcHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 12223344556667789999999999999999999999999999999999998888788888888887
Q ss_pred hCchh
Q 022970 268 TSPFA 272 (289)
Q Consensus 268 ~~~~~ 272 (289)
.+...
T Consensus 246 ~~~~~ 250 (331)
T PRK12392 246 SWGFT 250 (331)
T ss_pred Hhccc
Confidence 76643
No 10
>PRK06080 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Validated
Probab=99.88 E-value=2.3e-21 Score=180.21 Aligned_cols=178 Identities=21% Similarity=0.235 Sum_probs=121.8
Q ss_pred HHHHHhhhccchhHHHHHHHHHHHHHhhcccCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhhhh--hccc---------
Q 022970 88 LDAFYRFSRPHTVIGTALSIVSVALLAVEKVSDISPLFFTGVLEAIAAALMMNIYIVGLNQLSDI--EIDK--------- 156 (289)
Q Consensus 88 l~a~~~l~RPht~igt~l~vl~g~llA~~~~~~~~~~~~~~~l~~lva~l~~n~~~ngiNDyfD~--EIDk--------- 156 (289)
+++|+|++||+++..+.+++++|..+|... ..+++. .++..++++++++.++|.+|||||+ ++|+
T Consensus 3 ~~~~~~~~Rp~~~~~~~~p~l~G~~~a~~~-~~~~~~---~~ll~~l~~~l~~~~~n~~Ndy~D~~~g~D~~~~~~~~r~ 78 (293)
T PRK06080 3 FKAWLELARPKTLPAAFAPVLVGTALAYWL-GSFHPL---LALLALLAALLLQIATNLANDYGDYVKGTDTEDRVGPLRA 78 (293)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHc-CCccHH---HHHHHHHHHHHHHHHHHHHHhHHHhccCCCcccccCCccc
Confidence 678999999999999999999999988432 344432 2345577888889999999999999 5785
Q ss_pred ccchhhhHhHHHHHHHHHHHH----HHHH---------HHHHH----HHHHHHH---hcC-C------------------
Q 022970 157 LPLLRWKRFAVAAAMCILAVR----AVVV---------QLAFY----LHMQTHV---YRR-P------------------ 197 (289)
Q Consensus 157 lPplRlKr~p~laa~~Il~v~----a~iv---------~lg~~----l~~~t~~---~g~-p------------------ 197 (289)
+|++++++........++... ++.+ .++.. .+.++.- ++. +
T Consensus 79 l~~G~is~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~Ys~~p~~~~~~glge~~~~~~~G~~~~~~~ 158 (293)
T PRK06080 79 IGRGGISPKQVKRAAIAFFGLAALLGLYLVAVSGWWLLLLGLLCIAAAILYTGGPKPYGYTGLGELFVGVFFGLVIVLGT 158 (293)
T ss_pred ccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhcCCCCccCCCCcHHHHHHHHHHHHHHHHH
Confidence 788888666533222221111 1110 01100 0111100 000 0
Q ss_pred -----CCcchHHHHHHHHHHHHHHHHHHHhcCCChhhhHhcCCccchhhhChHHHHHHHHHHHHHHHHHHHHHHHhC
Q 022970 198 -----AVFSKPLIFATAFMSFFSVVIALFKDVPDLEGDKTFGIRTFTVRLGQKRVFWTCISLLEVAYTVAILVGATS 269 (289)
Q Consensus 198 -----~~~~~~V~~lt~f~~~f~~~i~i~KDi~DieGDr~~Gi~Tl~i~lG~k~a~~l~~~ll~~ay~~~i~~~~~~ 269 (289)
...+..+++......+++.++.+.||++|+||||+.|+||+|+++|+|++.++...+..++|+..+...+..
T Consensus 159 ~~~~~~~~~~~~~~~~l~~~l~~~~~~~~n~~~D~~~D~~~G~~Tl~v~lG~~~a~~~~~~l~~~~~~~~~~~~~~~ 235 (293)
T PRK06080 159 YYLQAGTVDSAVFLPALPCGLLIGAVLLANNIRDIETDRENGKNTLAVRLGDKNARRLHAALLALAYLCIVLLALLG 235 (293)
T ss_pred HHHhcCCCCHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHcCCeeEEeeECcHhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 001122223334455677889999999999999999999999999999999999999999999888777654
No 11
>PRK09573 (S)-2,3-di-O-geranylgeranylglyceryl phosphate synthase; Reviewed
Probab=99.88 E-value=3.4e-21 Score=178.56 Aligned_cols=170 Identities=21% Similarity=0.298 Sum_probs=114.7
Q ss_pred HHHHHhhhccchhHHHHHHHHHHHHHhhcccCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhccc-------ccch
Q 022970 88 LDAFYRFSRPHTVIGTALSIVSVALLAVEKVSDISPLFFTGVLEAIAAALMMNIYIVGLNQLSDIEIDK-------LPLL 160 (289)
Q Consensus 88 l~a~~~l~RPht~igt~l~vl~g~llA~~~~~~~~~~~~~~~l~~lva~l~~n~~~ngiNDyfD~EIDk-------lPpl 160 (289)
++.|+|++||++++++.++++.|+++|.+. ..++. .++.++++..++.+++|.+|||+|+|+|+ +|++
T Consensus 3 ~~~~~~l~Rp~~~~~~~~~~~~g~~la~~~--~~~~~---~~~l~~l~~~l~~~~~~~iNd~~D~~iD~~~~~~Rpl~sG 77 (279)
T PRK09573 3 IKAYFELIRPKNCIGASIGAIIGYLIASNF--KIDLK---GIILAALVVFLVCAGGNVINDIYDIEIDKINKPERPIPSG 77 (279)
T ss_pred HHHHHHHHhHhHHHHHHHHHHHHHHHHccC--CcchH---HHHHHHHHHHHHHHHHHHHHhhcccccccccCCCCCcCCC
Confidence 678999999999999999999999888432 22221 23445667778889999999999999999 8899
Q ss_pred hhhHhHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHhcCCCCcch---------------------HH
Q 022970 161 RWKRFAVAAAMCILAVRAV---------------VVQLAFYLHMQTHVYRRPAVFSK---------------------PL 204 (289)
Q Consensus 161 RlKr~p~laa~~Il~v~a~---------------iv~lg~~l~~~t~~~g~p~~~~~---------------------~V 204 (289)
|+++...+....++...++ +-.+..+.|.. ..++++...+. ..
T Consensus 78 ~is~~~a~~~~~~l~~~~~~l~~~l~~~~~~l~~~~~~~~~~Ys~-~lKr~~~~~~~~vg~~~G~~~~~g~~~~~~~~~~ 156 (279)
T PRK09573 78 RISLKEAKIFSITLFIVGLILSIFINIYAFLIALLNSILLYLYAK-DLKKTGLIGNLIVAYLTGLSFIFGGLAVFNVLRI 156 (279)
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH-HHhcCCcHHHHHHHHHHHHHHHHHHHHHccchHH
Confidence 9977754333222211110 00111222221 12322211111 12
Q ss_pred HHHHHHHHHHHHHHHHHhcCCChhhhHhcCCccchhhhChHHHHHHHHHHHHHHHHHHH
Q 022970 205 IFATAFMSFFSVVIALFKDVPDLEGDKTFGIRTFTVRLGQKRVFWTCISLLEVAYTVAI 263 (289)
Q Consensus 205 ~~lt~f~~~f~~~i~i~KDi~DieGDr~~Gi~Tl~i~lG~k~a~~l~~~ll~~ay~~~i 263 (289)
+++....+++++++++.||+||+|+||+.|++|+|+++|+|++.+++.....+..+...
T Consensus 157 ~~l~~~~f~~~~~~~~~~~~~D~~~D~~~G~~tlpv~~G~~~a~~~~~~~~~~~~~~~~ 215 (279)
T PRK09573 157 IILFLCAFFSTWSREIVKDIEDIEGDLKENVITLPIKYGIKKSWYIAKILLILAIVLSP 215 (279)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhHHHCCCccccHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 23344556677899999999999999999999999999999999988766555554443
No 12
>PRK12882 ubiA prenyltransferase; Reviewed
Probab=99.88 E-value=5.7e-21 Score=176.63 Aligned_cols=170 Identities=21% Similarity=0.264 Sum_probs=112.7
Q ss_pred HHHHHhhhccchhHHHHHHHHHHHHHhhcccCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhccc-------ccch
Q 022970 88 LDAFYRFSRPHTVIGTALSIVSVALLAVEKVSDISPLFFTGVLEAIAAALMMNIYIVGLNQLSDIEIDK-------LPLL 160 (289)
Q Consensus 88 l~a~~~l~RPht~igt~l~vl~g~llA~~~~~~~~~~~~~~~l~~lva~l~~n~~~ngiNDyfD~EIDk-------lPpl 160 (289)
++.|+|++||++..++.++++.|+++|.+.. ++. ...+..+++.+++.+++|.+|||+|+|+|| +|++
T Consensus 4 ~~~~~~l~Rp~~~~~~~~~~~~g~~~a~~~~---~~~--~~~~l~~l~~~l~~~~~~~~Nd~~D~~iD~~~~~~Rpl~~G 78 (276)
T PRK12882 4 VRGYLELTRPVNAVVAGVAAFIGAFIAGGIL---SSP--SLTGLAFAAVFLATGAGNAINDYFDREIDRINRPDRPIPSG 78 (276)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHhcccc---chH--HHHHHHHHHHHHHHHHHHHHHHHhhhccccccCCCCCcCCC
Confidence 6889999999999999999999999884422 111 113445667778889999999999999998 8888
Q ss_pred hhhHhHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHhcCCCCcchHH---------------------
Q 022970 161 RWKRFAVAAAMCILAVRAV---------------VVQLAFYLHMQTHVYRRPAVFSKPL--------------------- 204 (289)
Q Consensus 161 RlKr~p~laa~~Il~v~a~---------------iv~lg~~l~~~t~~~g~p~~~~~~V--------------------- 204 (289)
|+++...+....++.+.++ +..+..+.|.. .++..|...+..+
T Consensus 79 ~is~~~a~~~~~~l~~~g~~~~~~l~~~~~~~~~~~~~~~~~Yt~-~lK~~~~~g~~~vg~~~g~~~~~g~~~~~~~~~~ 157 (276)
T PRK12882 79 AVSPRGALAFSILLFAAGVALAFLLPPLCLAIALFNSLLLVLYAE-TLKGTPGLGNASVAYLTGSTFLFGGAAVGTEGLL 157 (276)
T ss_pred CcCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH-HHhcccchhHHHHHHHHHHHHHHHHHHhcccchH
Confidence 8876644322221111110 00111222321 1122232211111
Q ss_pred --HHHHHHHHHHHHHHHHHhcCCChhhhHhcCCccchhhhChHHHHHHHHHHHHHHHHHHH
Q 022970 205 --IFATAFMSFFSVVIALFKDVPDLEGDKTFGIRTFTVRLGQKRVFWTCISLLEVAYTVAI 263 (289)
Q Consensus 205 --~~lt~f~~~f~~~i~i~KDi~DieGDr~~Gi~Tl~i~lG~k~a~~l~~~ll~~ay~~~i 263 (289)
+.+....++++++++++||+||+||||+.|++|+|+++|+|++.+++.....+..+...
T Consensus 158 ~~~~l~~~~fl~~~~~~~~~~~~D~e~D~~~G~~tlpv~~G~~~t~~~~~~~~~~~~~~~~ 218 (276)
T PRK12882 158 ALLVLFALAALATLAREIIKDVEDIEGDRAEGARTLPILIGVRKALYVAAAFLLVAVAASP 218 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhhHHHcCCccccHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 11222334456789999999999999999999999999999999988776655554443
No 13
>PRK12884 ubiA prenyltransferase; Reviewed
Probab=99.87 E-value=5.4e-21 Score=176.45 Aligned_cols=176 Identities=19% Similarity=0.250 Sum_probs=119.8
Q ss_pred HHHHHHHhhhccchhHHHHHHHHHHHHHhhcccCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhccc-------cc
Q 022970 86 NALDAFYRFSRPHTVIGTALSIVSVALLAVEKVSDISPLFFTGVLEAIAAALMMNIYIVGLNQLSDIEIDK-------LP 158 (289)
Q Consensus 86 ~~l~a~~~l~RPht~igt~l~vl~g~llA~~~~~~~~~~~~~~~l~~lva~l~~n~~~ngiNDyfD~EIDk-------lP 158 (289)
+++++|+|++||++++++.++++.|+++|.+. +++ ..++.++++..++.+++|.+|||+|+|+|+ +|
T Consensus 2 ~~l~~~~~l~R~~~~~~~~~~~~~g~~la~~~---~~~---~~~~l~~l~~~l~~~a~~~~Nd~~D~~~D~~~r~~Rpl~ 75 (279)
T PRK12884 2 TKMKAYLELLRPEHGLMAGIAVVLGAIIALGG---LPL---DEALLGFLTAFFASGSANALNDYFDYEVDRINRPDRPIP 75 (279)
T ss_pred hHHHHHHHHhhhhHHHHHHHHHHHHHHHHCCC---Cch---HHHHHHHHHHHHHHHHHHHHHhhhhHhhhhccCCCCCCC
Confidence 47899999999999999999999999888542 221 122344567778889999999999999998 88
Q ss_pred chhhhHhHHHHHHHHHHHHHHHH------------HHHH-HHHHHHHHhcC-CCCcc----------------------h
Q 022970 159 LLRWKRFAVAAAMCILAVRAVVV------------QLAF-YLHMQTHVYRR-PAVFS----------------------K 202 (289)
Q Consensus 159 plRlKr~p~laa~~Il~v~a~iv------------~lg~-~l~~~t~~~g~-p~~~~----------------------~ 202 (289)
.+|+++...+....++...++++ .++. +...++..+|+ +...+ .
T Consensus 76 ~G~is~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~Ys~~lK~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 155 (279)
T PRK12884 76 SGRISRREALLLAILLFILGLIAAYLISPLAFLVVILVSVLGILYNWKLKEYGLIGNLYVAFLTGMTFIFGGIAVGELNE 155 (279)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHHHHHHhCCCch
Confidence 88887665433222221111100 0011 11112221222 21111 1
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCChhhhHhcCCccchhhhChHHHHHHHHHHHHHHHHHHHHHHH
Q 022970 203 PLIFATAFMSFFSVVIALFKDVPDLEGDKTFGIRTFTVRLGQKRVFWTCISLLEVAYTVAILVGA 267 (289)
Q Consensus 203 ~V~~lt~f~~~f~~~i~i~KDi~DieGDr~~Gi~Tl~i~lG~k~a~~l~~~ll~~ay~~~i~~~~ 267 (289)
..+++..+.+++++++++.+|++|+||||+.|+||+|+++|+|++.+++..+....++..++..+
T Consensus 156 ~~~~l~~~~~~~~~~~~~~~~~~D~e~D~~~G~~Tl~v~~G~~~~~~~~~~~~~~~~~~~~~~~~ 220 (279)
T PRK12884 156 AVILLAAMAFLMTLGREIMKDIEDVEGDRLRGARTLAILYGEKIAGRIAAALFILAVLLSPLPYL 220 (279)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhHHHcCCeeechHhcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22233345566778899999999999999999999999999999999998888888876555443
No 14
>PRK12875 ubiA prenyltransferase; Reviewed
Probab=99.87 E-value=5.6e-21 Score=179.01 Aligned_cols=179 Identities=23% Similarity=0.266 Sum_probs=107.1
Q ss_pred hHHHHHHHHhhhccchhHHHHHHHHHHHHHhhcccC-CCChHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhccc-ccchh
Q 022970 84 VINALDAFYRFSRPHTVIGTALSIVSVALLAVEKVS-DISPLFFTGVLEAIAAALMMNIYIVGLNQLSDIEIDK-LPLLR 161 (289)
Q Consensus 84 ~~~~l~a~~~l~RPht~igt~l~vl~g~llA~~~~~-~~~~~~~~~~l~~lva~l~~n~~~ngiNDyfD~EIDk-lPplR 161 (289)
..+.++.+++.+||+++..+..+++.|+.+|..... .+++..+.. +..++ +..|.+++++|||+|+|+|+ -|+-|
T Consensus 4 ~~~~~~~l~~l~RP~~~~~~~~p~l~G~~lA~~~~~~~~~~~~~~l-l~~~~--i~~Nl~~y~iND~~D~D~Dr~~prk~ 80 (282)
T PRK12875 4 LGDRLRYLLVLSRPRFWLYLAGPVVVGVAYAADSVADLFSPAAVAL-FAYFL--FPANVFLYGVNDVFDADTDELNPKKD 80 (282)
T ss_pred hHHHHHHHHHHhCccchHHHHHHHHHHHHHHhccCcccccHHHHHH-HHHHH--HHHHHHHhcchhhhhhhccccCCCcc
Confidence 456788899999999999999999999999865332 244422222 21111 34688889999999999999 22211
Q ss_pred --------hhHhHHHHH--HHHHHHH--------HHHHHHHHH--HHHHH----HHhcCCC-------------------
Q 022970 162 --------WKRFAVAAA--MCILAVR--------AVVVQLAFY--LHMQT----HVYRRPA------------------- 198 (289)
Q Consensus 162 --------lKr~p~laa--~~Il~v~--------a~iv~lg~~--l~~~t----~~~g~p~------------------- 198 (289)
.|+....+. .+.+.+. ...+.++.. ...++ .++..|.
T Consensus 81 ~~r~~~~s~~~~~~~~~~l~~~l~l~l~~~~~~~~~~~ll~~i~~~~~YS~pP~rlk~~p~~~~~~~g~~~~~~~~~y~~ 160 (282)
T PRK12875 81 REREVRYRGDRRVLVAVALSGALALAFLLVLPPAAWPALLAFLVLSVEYSAPPLRFKTTPVLDSLSNGLYILPGVAAYAL 160 (282)
T ss_pred CCCCccHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHcCCCccchhccHHHHHHHHHHHHHHHHHHHH
Confidence 011111111 0110000 000001110 01111 0011111
Q ss_pred ---CcchHHHHHHHHHHHHHHHHHHHhcCCChhhhHhcCCccchhhhChHHHHHHHHHHHHHHHHHHHHHHH
Q 022970 199 ---VFSKPLIFATAFMSFFSVVIALFKDVPDLEGDKTFGIRTFTVRLGQKRVFWTCISLLEVAYTVAILVGA 267 (289)
Q Consensus 199 ---~~~~~V~~lt~f~~~f~~~i~i~KDi~DieGDr~~Gi~Tl~i~lG~k~a~~l~~~ll~~ay~~~i~~~~ 267 (289)
..++..++ ...++++.+++++||++|+|+||+.|+||+|+++|+|++.+++..+..++-+..++++.
T Consensus 161 ~tg~~~~~~l~--~a~~l~~~~~~~in~i~Die~D~~aGi~Tlav~lG~~~a~~~~~~~~~~a~~~~~~~~~ 230 (282)
T PRK12875 161 VSGSLPPLLAV--AGGWLWAMGMHTFSAIPDIEPDRAAGIRTTATVLGERRTYAYCAACWLLAAAAFAAVDL 230 (282)
T ss_pred HcCCCcHHHHH--HHHHHHHHHHHHHHhccCHHHHHHcCCccchhhccHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 01111111 12246788999999999999999999999999999999999888877776666665553
No 15
>TIGR01475 ubiA_other putative 4-hydroxybenzoate polyprenyltransferase. A fairly deep split separates this polyprenyltransferase subfamily from the set of mitochondrial and proteobacterial 4-hydroxybenzoate polyprenyltransferases, described in TIGR01474. Protoheme IX farnesyltransferase (heme O synthase) (TIGR01473) is more distantly related. Because no species appears to have both this protein and a member of TIGR01474, it is likely that This model represents 4-hydroxybenzoate polyprenyltransferase, a critical enzyme of ubiquinone biosynthesis, in the Archaea, Gram-positive bacteria, Aquifex aeolicus, the Chlamydias, etc.
Probab=99.87 E-value=1.8e-20 Score=173.95 Aligned_cols=175 Identities=15% Similarity=0.130 Sum_probs=121.2
Q ss_pred HHHHHhhhccchhHHHHHHHHHHHHHhhcccCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhccc---------cc
Q 022970 88 LDAFYRFSRPHTVIGTALSIVSVALLAVEKVSDISPLFFTGVLEAIAAALMMNIYIVGLNQLSDIEIDK---------LP 158 (289)
Q Consensus 88 l~a~~~l~RPht~igt~l~vl~g~llA~~~~~~~~~~~~~~~l~~lva~l~~n~~~ngiNDyfD~EIDk---------lP 158 (289)
++.|+|++||++.++....++.|+++|.+.. .++. .++..+++..++++++|.+|||+|+|+|+ +|
T Consensus 2 ~~~~~~L~r~~~~~~~~~~~~~g~~la~~~~--~~~~---~~~l~~l~~~l~~~a~~~~Nd~~D~~~D~~~~Rt~~RPl~ 76 (282)
T TIGR01475 2 FKDILELIKFEHTVFALPFAYAGALLAAKGL--PGLK---TLILILIAAVSARTAAMAFNRIIDRAIDARNPRTKNRPLV 76 (282)
T ss_pred HHHHHHHHccccHHHHHHHHHHHHHHhcCCC--CCHH---HHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccCCCCCC
Confidence 6899999999999999999998999885432 2221 23445677788899999999999999999 88
Q ss_pred chhhhHhHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHhcCCCC------------------------
Q 022970 159 LLRWKRFAVAAAMCILAVR---------------AVVVQLAFYLHMQTHVYRRPAV------------------------ 199 (289)
Q Consensus 159 plRlKr~p~laa~~Il~v~---------------a~iv~lg~~l~~~t~~~g~p~~------------------------ 199 (289)
++|+++...+....+..+. +....+..+.| +. .|+-..
T Consensus 77 sG~is~~~a~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~Y--~~-~Kr~~~~~~~~~g~~~~~~~~~g~~a~~g~ 153 (282)
T TIGR01475 77 SGLISKKEARTMIILSLALFLSASYFLNPLAFILSPLVLLVLIIY--PY-TKRFTFLCHYVLGSTYGLAPLAGWVAVIGT 153 (282)
T ss_pred CCCcCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH--hh-HhccccccHHHHHHHHHHHHHHHHHHHhCC
Confidence 8998777533221111110 00011111222 22 121011
Q ss_pred cc--hHHHHHHHHHHHHHHHHHHHhcCCChhhhHhcCCccchhhhChHHHHHHHHHHHHHHHHHHHHHHHhCc
Q 022970 200 FS--KPLIFATAFMSFFSVVIALFKDVPDLEGDKTFGIRTFTVRLGQKRVFWTCISLLEVAYTVAILVGATSP 270 (289)
Q Consensus 200 ~~--~~V~~lt~f~~~f~~~i~i~KDi~DieGDr~~Gi~Tl~i~lG~k~a~~l~~~ll~~ay~~~i~~~~~~~ 270 (289)
.+ ...+++....++++.+++++||+||+|||++.|++|+|+++|+|++.++......++++...+.+....
T Consensus 154 ~~~~~~~~ll~~~~~~w~~~~~~i~~~~D~e~D~~~G~~tlpv~~G~~~a~~~~~~~~~~~~~~~~~~~~~~~ 226 (282)
T TIGR01475 154 ISFFLVAWLLGIGVGFWIAGFDLIYAIQDYEFDRKNGLHSIPARFGIKAALKIASLSHVITFILLLLVGFYVG 226 (282)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHcCCCchHHHhchHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 11 122233344556778899999999999999999999999999999999998888888888877776554
No 16
>COG0382 UbiA 4-hydroxybenzoate polyprenyltransferase and related prenyltransferases [Coenzyme metabolism]
Probab=99.87 E-value=1.5e-20 Score=175.13 Aligned_cols=176 Identities=22% Similarity=0.254 Sum_probs=122.5
Q ss_pred HHHHHHHHhhhccchhHHHHHHHHHHHHHhhcccCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhccc--------
Q 022970 85 INALDAFYRFSRPHTVIGTALSIVSVALLAVEKVSDISPLFFTGVLEAIAAALMMNIYIVGLNQLSDIEIDK-------- 156 (289)
Q Consensus 85 ~~~l~a~~~l~RPht~igt~l~vl~g~llA~~~~~~~~~~~~~~~l~~lva~l~~n~~~ngiNDyfD~EIDk-------- 156 (289)
...++.+.|+.||++++...++...|..++.. .+.. +..++.+++++++++.+++++||++|+|+||
T Consensus 10 ~~~~~~l~r~~r~i~~l~~~~~~~~~~~~~~~---~~~~--~~~~~l~~l~~~~~~~ag~~iND~~D~eiD~~n~rt~~R 84 (289)
T COG0382 10 LKALLKLLRLDRPIFNLLLLLPALLGLLLAAS---GLPS--LKLLLLAFLAFFLARSAGYVINDLADREIDRINPRTKNR 84 (289)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHc---CCch--HHHHHHHHHHHHHHHHHhHHHHHHhhhhccCCCCCccCC
Confidence 34566778888888888888888888887752 2222 3445566888888999999999999999999
Q ss_pred -ccchhhhHhHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHhcCC--------------------CC-
Q 022970 157 -LPLLRWKRFAVAAAMCILAVRAVVV---------------QLAFYLHMQTHVYRRP--------------------AV- 199 (289)
Q Consensus 157 -lPplRlKr~p~laa~~Il~v~a~iv---------------~lg~~l~~~t~~~g~p--------------------~~- 199 (289)
+|++|.++........++.+.++++ ....+.| ...|+.+ ..
T Consensus 85 Pl~sG~vS~~~a~~~~~~~~~~~~~~a~~l~~~~~~l~~~~~~l~~~Y--~~~Kr~~~~~~~~lg~~~~~~~~~g~~a~~ 162 (289)
T COG0382 85 PLPSGRVSVKEALLLAILLLLLGLALALLLNPLAFLLSLAALVLALAY--PFLKRFTFLPQLVLGLAFGLGALAGAAAVG 162 (289)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH--HHhhcCCchHHHHHHHHHHHHHHHHHHHHh
Confidence 8999997775433222221111111 0011111 1111110 11
Q ss_pred --cchHHHHHHHHHHHHHHHHHHHhcCCChhhhHhcCCccchhhhChHHHHHHHHHHHHHHHHHHHHHHHh
Q 022970 200 --FSKPLIFATAFMSFFSVVIALFKDVPDLEGDKTFGIRTFTVRLGQKRVFWTCISLLEVAYTVAILVGAT 268 (289)
Q Consensus 200 --~~~~V~~lt~f~~~f~~~i~i~KDi~DieGDr~~Gi~Tl~i~lG~k~a~~l~~~ll~~ay~~~i~~~~~ 268 (289)
.+.+.+++..+..+++++++++||+||+||||+.|++|+|+.+|++++.+++.... .+......++..
T Consensus 163 ~~~~~~~~~l~~~~~l~~~~~~~i~~~~D~e~D~~~G~~s~~~~~G~~~a~~l~~~~~-~~~~~~~~~~~~ 232 (289)
T COG0382 163 GSLPLLAWLLLLAAILWTLGYDIIYAIQDIEGDRKAGLKSLPVLFGIKKALALALLLL-LASALLVLLGLL 232 (289)
T ss_pred CccchHHHHHHHHHHHHHHHHHHHHhccCccchHhcCCcchHHHhCchhHHHHHHHHH-HHHHHHHHHHHH
Confidence 24456677788889999999999999999999999999999999999999998777 555555544443
No 17
>PRK13106 ubiA prenyltransferase; Reviewed
Probab=99.87 E-value=4.1e-20 Score=174.58 Aligned_cols=178 Identities=17% Similarity=0.138 Sum_probs=120.8
Q ss_pred hHHHHHHHHhhhccchhHHHHHHHHHHHHHhhcccCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhccc-------
Q 022970 84 VINALDAFYRFSRPHTVIGTALSIVSVALLAVEKVSDISPLFFTGVLEAIAAALMMNIYIVGLNQLSDIEIDK------- 156 (289)
Q Consensus 84 ~~~~l~a~~~l~RPht~igt~l~vl~g~llA~~~~~~~~~~~~~~~l~~lva~l~~n~~~ngiNDyfD~EIDk------- 156 (289)
..++++.|.|++||++.+++..+++.|+++|.+... ++. .++.++++..++..++|.+|||+|+|||+
T Consensus 11 ~~~~l~~yl~L~R~~~~~~~l~~~~~g~~la~~~~~--~~~---~l~l~~lg~~l~~~a~~~~Nd~~D~diD~~~~RT~~ 85 (300)
T PRK13106 11 TRSKFYIILRFLRIEQTFFSLPMAYLGAFVAIKGIP--PIS---TLILIFLALFFLRTAGMTNDNLADLEIDAKNPRTKN 85 (300)
T ss_pred hHHHHHHHHHHHccccHHHHHHHHHHHHHHHcCCCC--CHH---HHHHHHHHHHHHHHHHHHHHhhHHhccccCCCccCC
Confidence 566899999999999999999999999998854322 221 12344667777889999999999999999
Q ss_pred --ccchhhhHhHHHHHHHHHHH----H-------HHH-H---HHHHHHHHHHHHhcCCCCcc------------------
Q 022970 157 --LPLLRWKRFAVAAAMCILAV----R-------AVV-V---QLAFYLHMQTHVYRRPAVFS------------------ 201 (289)
Q Consensus 157 --lPplRlKr~p~laa~~Il~v----~-------a~i-v---~lg~~l~~~t~~~g~p~~~~------------------ 201 (289)
+|++|++....+........ . +.. . .+..++| +. .||-..++
T Consensus 86 RPl~sG~is~~~A~~~~~~~~~~~~~~~~~ln~~~~~l~~~~~~~~~~Y--~~-~KR~t~~~~~~lg~~~~~~~~~G~~a 162 (300)
T PRK13106 86 RPLVTGAIKISEAKALITAGLILFFASAYLVNRWALLLSPIVALIAMSY--PY-MKRYTAFANYHLASIQGLAVFSGAVA 162 (300)
T ss_pred CCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH--hH-HhcCCcchHHHHHHHHHHHHHHHHHH
Confidence 89999977754422211100 0 000 0 0011122 22 12101100
Q ss_pred --------------hHHHHHHHHHHHHHHHHHHHhcCCChhhhHhcCCccchhhhChHHHHHHHHHHHHHHHHHHHHHHH
Q 022970 202 --------------KPLIFATAFMSFFSVVIALFKDVPDLEGDKTFGIRTFTVRLGQKRVFWTCISLLEVAYTVAILVGA 267 (289)
Q Consensus 202 --------------~~V~~lt~f~~~f~~~i~i~KDi~DieGDr~~Gi~Tl~i~lG~k~a~~l~~~ll~~ay~~~i~~~~ 267 (289)
..-+.+....++|+.+++++||+||+|+|++.|+||+|+++| +++.+++..+...+-+..++.+.
T Consensus 163 ~~g~~~~~~~~~l~~~~~~l~~~~~lw~~~~d~iya~~D~e~D~~~Gi~Slpv~~G-~~a~~~~~~~~~~~v~l~~~~~~ 241 (300)
T PRK13106 163 VLGLYANSLIQVLLRVPWLFVIGTILWAAGFDLYNHIPDAEFDREMGLHSFAVVLG-KWALTFAGLNQLFSVVLDLLGDL 241 (300)
T ss_pred HcCCcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHccchhhHHHCCCCccHHHHh-hhHHHHHHHHHHHHHHHHHHHHH
Confidence 011222334567889999999999999999999999999999 88999888877777777777666
Q ss_pred hCc
Q 022970 268 TSP 270 (289)
Q Consensus 268 ~~~ 270 (289)
...
T Consensus 242 ~~~ 244 (300)
T PRK13106 242 YYG 244 (300)
T ss_pred HhC
Confidence 543
No 18
>PRK12883 ubiA prenyltransferase UbiA-like protein; Reviewed
Probab=99.86 E-value=3.4e-20 Score=171.55 Aligned_cols=160 Identities=23% Similarity=0.293 Sum_probs=102.4
Q ss_pred HHHHHhhhccchhHHHHHHHHHHHHHhhcccCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhccc-------ccch
Q 022970 88 LDAFYRFSRPHTVIGTALSIVSVALLAVEKVSDISPLFFTGVLEAIAAALMMNIYIVGLNQLSDIEIDK-------LPLL 160 (289)
Q Consensus 88 l~a~~~l~RPht~igt~l~vl~g~llA~~~~~~~~~~~~~~~l~~lva~l~~n~~~ngiNDyfD~EIDk-------lPpl 160 (289)
+++|+|++|||++....++++.|++++.+..+++ . .++..+++..++..++|.+|||+|+|+|+ +|++
T Consensus 3 l~~~~~l~Rp~~~~~~~~~~~~G~~la~~~~~~~--~---~~~l~~~~~~~~~~a~~~~Nd~~D~~~D~~n~~~Rpl~sG 77 (277)
T PRK12883 3 LKAFIEITRPHNCILAGIVGILGSLVALGGIPPI--K---TLILIFLVVYLGCSGGNTINDYFDYEIDKINRPNRPLPRG 77 (277)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHcCCCCcH--H---HHHHHHHHHHHHHHHHhHHHhhhhHhccccCCCCCCCCCC
Confidence 6789999999999999999999999875432211 1 12223445555667899999999999998 8888
Q ss_pred hhhHhHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHhcC-CCCcchHHH-------------------
Q 022970 161 RWKRFAVAAAMCILAVRAVVV---------------QLAFYLHMQTHVYRR-PAVFSKPLI------------------- 205 (289)
Q Consensus 161 RlKr~p~laa~~Il~v~a~iv---------------~lg~~l~~~t~~~g~-p~~~~~~V~------------------- 205 (289)
|+++...+....++...+.++ .+..+.| +..+++ +..++..+.
T Consensus 78 ~is~~~a~~~~~~l~~~g~~l~~~~~~~~~~~~~~~~~~~~~Y--~~~~k~~~~lg~~~vg~~~g~~~~~g~~a~~~~~~ 155 (277)
T PRK12883 78 AMSRKAALYYSLLLFAVGLALAYLINIEAFLFALGAYVLMFLY--AWKLKPLPFIGNVVVALLTGATPIYGAIAVGRIGL 155 (277)
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hhcccCCcchhhHHHHHHHHHHHHHHHHHhccccH
Confidence 887665433222221111111 0011112 211121 211111110
Q ss_pred --HHHHHHHHHHHHHHHHhcCCChhhhHhcCCccchhhhChHHHHHHHHHH
Q 022970 206 --FATAFMSFFSVVIALFKDVPDLEGDKTFGIRTFTVRLGQKRVFWTCISL 254 (289)
Q Consensus 206 --~lt~f~~~f~~~i~i~KDi~DieGDr~~Gi~Tl~i~lG~k~a~~l~~~l 254 (289)
++..+.+++.+++++.||++|+||||+.|++|+|+++|+|++.+++...
T Consensus 156 ~~~~~~~~fl~~~~~~~~~~~~D~e~D~~~G~~Tlpv~~G~~~a~~~~~~~ 206 (277)
T PRK12883 156 AGYLAICAFLVNVAREIMKDIEDIEGDKAKGAKTLPIIIGKKRAAYIGAIF 206 (277)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhhccHHHcCCcCcChHhcHHHHHHHHHHH
Confidence 1112244456789999999999999999999999999999999876554
No 19
>PRK12847 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed
Probab=99.86 E-value=8.3e-20 Score=169.97 Aligned_cols=180 Identities=17% Similarity=0.148 Sum_probs=119.7
Q ss_pred hhHHHHHHHHhhhccchhHH---HHHHHHHHHHHhhcccCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhccc---
Q 022970 83 SVINALDAFYRFSRPHTVIG---TALSIVSVALLAVEKVSDISPLFFTGVLEAIAAALMMNIYIVGLNQLSDIEIDK--- 156 (289)
Q Consensus 83 ~~~~~l~a~~~l~RPht~ig---t~l~vl~g~llA~~~~~~~~~~~~~~~l~~lva~l~~n~~~ngiNDyfD~EIDk--- 156 (289)
.++.++++|+|++|||+..+ +.++++.|+++|.... ..++ ..++..+++++++..++|.+|||+|+|+|+
T Consensus 2 ~~~~~~~~~~~l~R~~kp~~~~l~~~~~~~g~~la~~~~-~~~~---~~~ll~~l~~~l~~~a~~~~Nd~~D~~iD~~~~ 77 (285)
T PRK12847 2 DILMKFLAYFKLMRLHKPIGILLVFFPTLFGLLLASHSL-LPDI---SLLVLFIIGSVLMRSAGCIINDIFDRKIDKHVA 77 (285)
T ss_pred chHHHHHHHHHHHCcchHHHHHHHHHHHHHHHHHHhCcc-CCcH---HHHHHHHHHHHHHHHHHHHHHhHHHhhhccCCC
Confidence 45678999999999998876 5578888888875422 1232 223455677778899999999999999997
Q ss_pred ------ccchhhhHhHHHHHHHHHHHHHHHH------------HHHHH-HHHHHHHhcCCCCc-----------------
Q 022970 157 ------LPLLRWKRFAVAAAMCILAVRAVVV------------QLAFY-LHMQTHVYRRPAVF----------------- 200 (289)
Q Consensus 157 ------lPplRlKr~p~laa~~Il~v~a~iv------------~lg~~-l~~~t~~~g~p~~~----------------- 200 (289)
+|++|++....+....++...+.++ .++.. ...++. .++...+
T Consensus 78 Rt~~Rpl~sG~is~~~a~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~Y~~-~Kr~~~~~~~~~g~~~~~~~l~~~ 156 (285)
T PRK12847 78 RTKNRPLASGALSVKQALILLFILLLIALVILLLLNKTTIYLSFIAVILIVLYPL-MKRFFYWPQLFLGFTFNMGILMAF 156 (285)
T ss_pred cccCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhccc-cccCCcccHHHHHHHHHHHHHHHH
Confidence 8889987665433222221111110 00110 111121 2221111
Q ss_pred -------chHHHHHHHHHHHHHHHHHHHhcCCChhhhHhcCCccchhhhChHHHHHHHHHHHHHHHHHHHHHHH
Q 022970 201 -------SKPLIFATAFMSFFSVVIALFKDVPDLEGDKTFGIRTFTVRLGQKRVFWTCISLLEVAYTVAILVGA 267 (289)
Q Consensus 201 -------~~~V~~lt~f~~~f~~~i~i~KDi~DieGDr~~Gi~Tl~i~lG~k~a~~l~~~ll~~ay~~~i~~~~ 267 (289)
+...+++....++++.+.+++++++|+|+|++.|++|+|+++|+|++.+++.......|++.++.-.
T Consensus 157 ~a~~g~~~~~~~~l~~~~~~w~~~~~~~~a~~D~e~D~~~G~~tl~v~~G~~~a~~~~~~~~~~~~~~~~~~~~ 230 (285)
T PRK12847 157 AAVQNQLDIEAILLYIGCIFWTIGYDTIYAYQDKKDDLKIGVKSTAIYFGNKTRKYILRLYIISLILWLILGII 230 (285)
T ss_pred HHHcCCCcHHHHHHHHHHHHHHHHHHHHHHhccHhhHHHcCCchhHHHhccccHHHHHHHHHHHHHHHHHHHHH
Confidence 1122233344566788899999999999999999999999999999999988888777776655433
No 20
>PRK12874 ubiA prenyltransferase; Reviewed
Probab=99.85 E-value=1.1e-19 Score=170.67 Aligned_cols=182 Identities=16% Similarity=0.126 Sum_probs=118.9
Q ss_pred hhhHHHHHHHHhhhccchhHHHHHHHHHHHHHhhcc---cCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhccc--
Q 022970 82 NSVINALDAFYRFSRPHTVIGTALSIVSVALLAVEK---VSDISPLFFTGVLEAIAAALMMNIYIVGLNQLSDIEIDK-- 156 (289)
Q Consensus 82 ~~~~~~l~a~~~l~RPht~igt~l~vl~g~llA~~~---~~~~~~~~~~~~l~~lva~l~~n~~~ngiNDyfD~EIDk-- 156 (289)
++.++++++|+|++||++.+++...++.|.++|.+. ...+++. .++.+++++.++..+++.+|||+|+|||+
T Consensus 2 ~~~~~~l~~y~~l~r~~~~~~~l~~a~~g~~la~~~~~~~~~~~~~---~~~l~~l~~~l~~~a~~~~Nd~~DrdiD~~~ 78 (291)
T PRK12874 2 KKFTKKLKDISELVVFKHSIFSLPFIFIAMIVASKQKNDTGWFGFK---LLILGILAAVSARNFAMAFNRLVDRDIDKDN 78 (291)
T ss_pred chHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhhhccCCCCCHH---HHHHHHHHHHHHHHHHHHHHhhhhhccccCC
Confidence 356778999999999999999999999999988521 1123322 23445666677788899999999999999
Q ss_pred -------ccchhhhHhHHHHHHHHHHHHHHH-----------HHH--HHHHHHHHHHhcCCCC-----------------
Q 022970 157 -------LPLLRWKRFAVAAAMCILAVRAVV-----------VQL--AFYLHMQTHVYRRPAV----------------- 199 (289)
Q Consensus 157 -------lPplRlKr~p~laa~~Il~v~a~i-----------v~l--g~~l~~~t~~~g~p~~----------------- 199 (289)
+|++|++....+.....+.+.+++ +.+ ..+...++. .||-..
T Consensus 79 ~RT~~RPl~sG~is~~~a~~~~~~~~~~~~~~~~~~n~~~~~l~~~~~~~~~~Y~~-~KR~t~~~~~~~g~~~~~~~l~G 157 (291)
T PRK12874 79 PRTANRPSVDGRISVKSMVLFIVLNALIFIGVSYFINPLAFKLSFPFLIVLGGYSY-FKRFSSLAHLVLGLSLGLAPIAG 157 (291)
T ss_pred CCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhh-hcccccccHHHHHHHHHHHHHHH
Confidence 899999777543322222111100 000 111111222 222111
Q ss_pred -------cchHHHHHHHHHHHHHHHHHHHhcCCChhhhHhcCCccchhhhChHHHHHHHHHHHHHHHHHHHHHHH
Q 022970 200 -------FSKPLIFATAFMSFFSVVIALFKDVPDLEGDKTFGIRTFTVRLGQKRVFWTCISLLEVAYTVAILVGA 267 (289)
Q Consensus 200 -------~~~~V~~lt~f~~~f~~~i~i~KDi~DieGDr~~Gi~Tl~i~lG~k~a~~l~~~ll~~ay~~~i~~~~ 267 (289)
.+...+++....++|+.+.+++++++|+|+||+.|++|+|+++|++++.+++.....+..+..++.+.
T Consensus 158 ~~av~g~~~~~~~~l~~~~~~w~~~~~~~~a~~D~~~D~~~Gi~slpv~~G~~~~~~~~~~~~~~~~~~~~~~~~ 232 (291)
T PRK12874 158 VVAVLGEIPLWSVFLALGVMFWVAGFDLLYSLQDMEFDKKRGLHSIPSKFGEKATLFISRLFHLLAVLFWLLFVW 232 (291)
T ss_pred HHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHcCCCcccHHhhhHhHHHHHHHHHHHHHHHHHHHHH
Confidence 11112233345567888999999999999999999999999999999988765544444444444333
No 21
>PRK12872 ubiA prenyltransferase; Reviewed
Probab=99.85 E-value=4.3e-20 Score=170.50 Aligned_cols=178 Identities=18% Similarity=0.151 Sum_probs=109.8
Q ss_pred HHHHHHHhhhccchhHHHHHHHHHHHHHhhcccCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcccc-------c
Q 022970 86 NALDAFYRFSRPHTVIGTALSIVSVALLAVEKVSDISPLFFTGVLEAIAAALMMNIYIVGLNQLSDIEIDKL-------P 158 (289)
Q Consensus 86 ~~l~a~~~l~RPht~igt~l~vl~g~llA~~~~~~~~~~~~~~~l~~lva~l~~n~~~ngiNDyfD~EIDkl-------P 158 (289)
+-+++++|+.|+.|.+.+..++..++.... ..++.+ ....+++..+...++|.+|||+|+|+|+. |
T Consensus 2 ~~~~~~~~~~~~~~~~~a~~~~~l~~~~~~--~~~~~~-----~~~~~~~~~~~~~~~~~~N~~~D~~~D~~n~~~R~~~ 74 (285)
T PRK12872 2 KLLFAFLKLFRYGNLLIAALGQSLVYMASL--LLGLPI-----SWLLLLITFLIAAAVYIINYLTDLEEDIINKPERVVF 74 (285)
T ss_pred hHHHHHHHHHHHccHHHHHHHHHHHHHHHH--HHcChh-----HHHHHHHHHHHHHHHHHhhhhcCCchhhcCCCchHHH
Confidence 457899999999999998888777653211 111111 12335556667788999999999999992 2
Q ss_pred chhhhHhHHHHHHHHHHHHHHHH----------------HHHHHHHHHH---HHhcCCCC--------------------
Q 022970 159 LLRWKRFAVAAAMCILAVRAVVV----------------QLAFYLHMQT---HVYRRPAV-------------------- 199 (289)
Q Consensus 159 plRlKr~p~laa~~Il~v~a~iv----------------~lg~~l~~~t---~~~g~p~~-------------------- 199 (289)
+.|..+...+...++....++.+ .+..++|... ..+..|..
T Consensus 75 s~~~~~~~~~~l~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~Ys~~~~~~lk~~p~~~~~~vg~~~g~~~~~~~~~~ 154 (285)
T PRK12872 75 SETKAYGLFLLLNVLGLYLGAYLLAVIGGPKFALIFIIPLILGILYSVFFKRRLKRIPLFKNLVVSLLWALSPLILGVYY 154 (285)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhChhHHHHhhhhhHhhHHHHHHHHHHHHHHHHHh
Confidence 22222221111111111110000 0111122210 11111211
Q ss_pred ----cchHHHHHHHHHHHHHHHHHHHhcCCChhhhHhcCCccchhhhChHHHHHHHHHHHHHHHHHHHHHHHhCc
Q 022970 200 ----FSKPLIFATAFMSFFSVVIALFKDVPDLEGDKTFGIRTFTVRLGQKRVFWTCISLLEVAYTVAILVGATSP 270 (289)
Q Consensus 200 ----~~~~V~~lt~f~~~f~~~i~i~KDi~DieGDr~~Gi~Tl~i~lG~k~a~~l~~~ll~~ay~~~i~~~~~~~ 270 (289)
++...+....+.++..++++++||+||+||||+.|++|+|+++|+|++.+++..+..++|++.+.......
T Consensus 155 ~~~~~~~~~~~~~~~~fl~~~~~~~~~d~~D~e~D~~~G~~Tlpv~lG~~~t~~~~~~~~~~~~~~~~~~~~~~~ 229 (285)
T PRK12872 155 YQLTIFSLLLLYAVFIFLKSFIREIVFDIKDIEGDRKSGLKTLPIVLGKERTLKFLLILNLLFLILLILGVYTGL 229 (285)
T ss_pred cccccchHHHHHHHHHHHHHHHHHHHHhcccchhHHHcCCcccchhcchHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 11222233445556678899999999999999999999999999999999999999999998887766544
No 22
>PRK13387 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Provisional
Probab=99.85 E-value=6e-20 Score=174.39 Aligned_cols=178 Identities=17% Similarity=0.155 Sum_probs=111.3
Q ss_pred HHHHHhhhccchhHHHHHHHHHHHHHhhcccCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhccc-----------
Q 022970 88 LDAFYRFSRPHTVIGTALSIVSVALLAVEKVSDISPLFFTGVLEAIAAALMMNIYIVGLNQLSDIEIDK----------- 156 (289)
Q Consensus 88 l~a~~~l~RPht~igt~l~vl~g~llA~~~~~~~~~~~~~~~l~~lva~l~~n~~~ngiNDyfD~EIDk----------- 156 (289)
++.|+|.+||+|...+..+++.|+.+|......+++. .++.+++++++.++..|.+|||||+|.|+
T Consensus 3 ~~~~~~~~Rp~tl~~s~~pvllG~a~a~~~~~~~~~~---~~ll~ll~~~~~~~~~N~~NDy~D~~~g~D~~~~~~~~~~ 79 (317)
T PRK13387 3 AKLFLKLVEIHTKIASFFPVILGTLFSLYVAKIFDWL---LFLAFMVAMLAFDIATTAINNYMDFKKALDTADYVGIGNG 79 (317)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHhCCCccHH---HHHHHHHHHHHHHHHHHHHHhHHHHhcCCCcccccCCcch
Confidence 5779999999999999999999999986433456643 33556777788899999999999998544
Q ss_pred ccchhhhHhHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHh-cCCCC------cchH-------HHH---
Q 022970 157 LPLLRWKRFAVAAAMCILAVRAVV-------------VQLAFYLHMQTHVY-RRPAV------FSKP-------LIF--- 206 (289)
Q Consensus 157 lPplRlKr~p~laa~~Il~v~a~i-------------v~lg~~l~~~t~~~-g~p~~------~~~~-------V~~--- 206 (289)
++...+++........++...+.+ +.+|.....--..+ ++|.. +... +++
T Consensus 80 i~~~~ls~~~v~~~~~~~~~ia~~~Gl~L~~~~g~~~l~igl~g~~~~~~Yt~gP~~l~y~gLGe~~v~i~~G~~~v~g~ 159 (317)
T PRK13387 80 IGQHGLKPRNVLTVILLMYVVAAILGVYLCMNTSWLLLVIGLICFAIGILYTGGPLPLSRMPLGEIFSGLTMGFGIFLLA 159 (317)
T ss_pred hccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHhhhhcCCCcccccCccHHHHHHHHHHHHHHHHH
Confidence 333444333222111111111100 01111100000001 11111 0000 000
Q ss_pred ----------------------------------HHHHHHHHHHHHHHHhcCCChhhhHhcCCccchhhhChHHHHHHHH
Q 022970 207 ----------------------------------ATAFMSFFSVVIALFKDVPDLEGDKTFGIRTFTVRLGQKRVFWTCI 252 (289)
Q Consensus 207 ----------------------------------lt~f~~~f~~~i~i~KDi~DieGDr~~Gi~Tl~i~lG~k~a~~l~~ 252 (289)
...-..+.+..+++.||++|+|+||+.|+||+|+++|+|++.++-.
T Consensus 160 ~yv~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~slp~g~l~~~ill~Nn~~D~e~D~~~gk~TL~v~lG~~~a~~l~~ 239 (317)
T PRK13387 160 VYINTNTITIESLLFQGEMFTIQGNLIAIIAIGVISLPIIFTIANIMLANNLRDLDEDIKNHRYTLVYYIGREKGVVLFA 239 (317)
T ss_pred HHHhcCCCchHHHHhcccchhhcchhHHHHHHHHHHHHHHHHHHHHHHhcCCccchhHHHcCCeeeeeeEcHHhHHHHHH
Confidence 1111112344678999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHh
Q 022970 253 SLLEVAYTVAILVGAT 268 (289)
Q Consensus 253 ~ll~~ay~~~i~~~~~ 268 (289)
+++.++|+..+...+.
T Consensus 240 ~l~~~a~l~~~~~v~~ 255 (317)
T PRK13387 240 ILFYASYLAIAVIVLM 255 (317)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999976655544
No 23
>PRK07419 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Provisional
Probab=99.85 E-value=6.7e-20 Score=173.45 Aligned_cols=178 Identities=17% Similarity=0.155 Sum_probs=117.7
Q ss_pred HHHHHHHHhhhccchhHHHHHHHHHHHHHhhcccCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhhhhh--ccccc---c
Q 022970 85 INALDAFYRFSRPHTVIGTALSIVSVALLAVEKVSDISPLFFTGVLEAIAAALMMNIYIVGLNQLSDIE--IDKLP---L 159 (289)
Q Consensus 85 ~~~l~a~~~l~RPht~igt~l~vl~g~llA~~~~~~~~~~~~~~~l~~lva~l~~n~~~ngiNDyfD~E--IDklP---p 159 (289)
+++++.|++-+||+|...+..+++.|..+|.....++++. .++.+++++++.++..|.+|||||++ +|+-+ +
T Consensus 9 ~~~~~~w~~a~RP~tl~asl~pv~lG~a~a~~~~~~f~~~---~~ll~ll~~~l~q~~~N~~NDy~D~~~G~D~~~~~~~ 85 (304)
T PRK07419 9 PSRRKLWLAAIKPPMYSVAIMPILVGTAWALGETGVFRLD---QFITFLLAAILILAWENLSNDVFDADTGIDKNKFHSV 85 (304)
T ss_pred ccHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHcCCCccHH---HHHHHHHHHHHHHHHHHHHHHHHHHhccCCcccccCc
Confidence 4568899999999999999999999999986533466643 33456788899999999999999998 78721 1
Q ss_pred hh----hhHhHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHh-cCCCC--------------------
Q 022970 160 LR----WKRFAVAAAMCILAVRAVVVQLAFYLHMQT---------------HVY-RRPAV-------------------- 199 (289)
Q Consensus 160 lR----lKr~p~laa~~Il~v~a~iv~lg~~l~~~t---------------~~~-g~p~~-------------------- 199 (289)
.| -|+...++..|.+ +....|+++...+ ..+ ++|..
T Consensus 86 ~~~~~~~~~v~~~~~~~~~----~a~~~Gl~L~~~~g~~~l~ig~~g~~~~~~YT~gP~~l~y~gLGE~~v~l~~G~l~v 161 (304)
T PRK07419 86 VNLTGNKSLVFWLANLFLL----LGLLGILAIALQSDWTVLGLVLLCCFLGYLYQGPPFRLGYQGLGEPLCFLAFGPLAV 161 (304)
T ss_pred ccccCcHHHHHHHHHHHHH----HHHHHHHHHHHhhcHHHHHHHHHHHHHhheccCCCcccCCCCchHHHHHHHHHHHHH
Confidence 11 1222122211111 1111111111100 001 11211
Q ss_pred ----------cchHHHHHHHHHHHHHHHHHHHhcCCChhhhHhcCCccchhhhChHHHHHHHHHHHHHHHHHHHHHHHhC
Q 022970 200 ----------FSKPLIFATAFMSFFSVVIALFKDVPDLEGDKTFGIRTFTVRLGQKRVFWTCISLLEVAYTVAILVGATS 269 (289)
Q Consensus 200 ----------~~~~V~~lt~f~~~f~~~i~i~KDi~DieGDr~~Gi~Tl~i~lG~k~a~~l~~~ll~~ay~~~i~~~~~~ 269 (289)
++...+.......+.+..+...||++|+|.||+.|+||+|+++|+|++.++..+++..+|++.+...+..
T Consensus 162 ~g~~yv~t~~~~~~~~~~sl~~gll~~~IL~~Nn~rD~e~D~~~Gk~TL~v~lG~~~a~~ly~~l~~~ay~~~i~~v~~g 241 (304)
T PRK07419 162 AAALYSQTPSWSLIPLAASIILGLATSLILFCSHFHQVEDDLAAGKRSPIVRLGTKRGAQLLPWIVGLIYALELLPVLLG 241 (304)
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHcCCcchhhHHHcCCcceeeeechHhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 1111111222223445678899999999999999999999999999999999999999999887766654
No 24
>PRK12870 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed
Probab=99.85 E-value=1.5e-19 Score=169.36 Aligned_cols=177 Identities=16% Similarity=0.069 Sum_probs=114.6
Q ss_pred hHHHHHHHHhhhccchhHHHH---HHHHHHHHHhhcccCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhccc----
Q 022970 84 VINALDAFYRFSRPHTVIGTA---LSIVSVALLAVEKVSDISPLFFTGVLEAIAAALMMNIYIVGLNQLSDIEIDK---- 156 (289)
Q Consensus 84 ~~~~l~a~~~l~RPht~igt~---l~vl~g~llA~~~~~~~~~~~~~~~l~~lva~l~~n~~~ngiNDyfD~EIDk---- 156 (289)
..+++++|+|++||++..++. ++++.|+++|.+.. .++. .++..+++.+++.+++|.+|||+|+|+|+
T Consensus 5 ~~~~~~~y~~L~R~~kp~~~~l~~~~~~~g~~lA~~~~--~~~~---~~~l~~lg~~~~~~a~~~~Nd~~D~~iD~~~~R 79 (290)
T PRK12870 5 LEPTWLAIIRLLRWDKPAGRLILMIPALWAVFLAAHGL--PPLP---LVGIIILGALATSAAGCVVNDLWDRDIDPQVER 79 (290)
T ss_pred cchhHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHccCC--CCHH---HHHHHHHHHHHHHHHHHHHHhHHHhccCCCCCc
Confidence 345789999999999998888 58888888874432 2221 22344566667788999999999999997
Q ss_pred -----ccchhhhHhHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHhcC---CC---------------
Q 022970 157 -----LPLLRWKRFAVAAAMCILAVRAVVV---------------QLAFYLHMQTHVYRR---PA--------------- 198 (289)
Q Consensus 157 -----lPplRlKr~p~laa~~Il~v~a~iv---------------~lg~~l~~~t~~~g~---p~--------------- 198 (289)
+|++|++....+.....+...++++ .+..++| +..++. |.
T Consensus 80 t~~RPL~sG~is~~~a~~~~~~~~~~~~~l~~~l~~~~~~l~~~~~~~~~~Y--~~~KR~t~~~~~~lg~~~~~~~l~g~ 157 (290)
T PRK12870 80 TRFRPLASRRLSVKVGIVIAIVALLCAAGLAFFLNPLSFWLCVAAVPVIFLY--PLAKRVFPVPQLVLAIAWGFAVLISW 157 (290)
T ss_pred ccCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHh--hhhhhccccceeeehHHHHhHHHHHH
Confidence 8999998775433322221111100 0011122 111110 00
Q ss_pred -----CcchHHHHHHHHHHHHHHHHHHHhcCCChhhhHhcCCccchhhhChHHHHHHHHHHHHHHHHHHHHHHHh
Q 022970 199 -----VFSKPLIFATAFMSFFSVVIALFKDVPDLEGDKTFGIRTFTVRLGQKRVFWTCISLLEVAYTVAILVGAT 268 (289)
Q Consensus 199 -----~~~~~V~~lt~f~~~f~~~i~i~KDi~DieGDr~~Gi~Tl~i~lG~k~a~~l~~~ll~~ay~~~i~~~~~ 268 (289)
..+...+++....++|+.+.+++++++|+|+|++.|++|+|+++|++++.+++........+ ...++..
T Consensus 158 ~a~~g~~~~~~~~l~~~~~lw~~~~d~~~a~~D~e~D~~~G~~slav~~G~~~~~~~~~~~~~~~~~-l~~~~~~ 231 (290)
T PRK12870 158 SAVTGHLDLGTWLLWAATVFWTLGFDTVYAMSDREDDLRIGVNSSAIFFGRYAPEAIGLFFALTVGF-LAILGVL 231 (290)
T ss_pred HHHcCCCCHHHHHHHHHHHHHHHHHHHHHHhhhHhhHHHCCCcchhHHhccccHHHHHHHHHHHHHH-HHHHHHH
Confidence 01222334445666788999999999999999999999999999999999887643333333 3344443
No 25
>PRK05951 ubiA prenyltransferase; Reviewed
Probab=99.84 E-value=1.5e-19 Score=169.61 Aligned_cols=180 Identities=17% Similarity=0.184 Sum_probs=111.6
Q ss_pred HHHHHHHhhhccchhHHHHHHHHHHHHHhhcccCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhhhhh--ccc-------
Q 022970 86 NALDAFYRFSRPHTVIGTALSIVSVALLAVEKVSDISPLFFTGVLEAIAAALMMNIYIVGLNQLSDIE--IDK------- 156 (289)
Q Consensus 86 ~~l~a~~~l~RPht~igt~l~vl~g~llA~~~~~~~~~~~~~~~l~~lva~l~~n~~~ngiNDyfD~E--IDk------- 156 (289)
++++.|++.+||+|...+..+++.|..+|.....++++. .++.++++++++++..|.+|||+|+| +|+
T Consensus 2 ~~~~~~~~~~Rp~tl~~s~~~v~lG~a~a~~~~~~f~~~---~~ll~~l~~~l~~~~~n~~Ndy~D~~~g~D~~~rt~~~ 78 (296)
T PRK05951 2 QNAKLFFIFTRPWSFVMTAIVAFFSIAYGYYLFRSFDPL---LGALMLLGYFLLHASLNVFNDYKDYVLDCDHHETTGYR 78 (296)
T ss_pred ccHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcCCcCHH---HHHHHHHHHHHHHHHHHHHHhHHHHhcCCccccccCCC
Confidence 368899999999999999999999999886433456643 33556778888999999999999955 554
Q ss_pred ---ccchhhhHhHHHHHHHHHHHHH------H-------HHHHHHHHHHHHHHh-cCCCCc------c-------hHHHH
Q 022970 157 ---LPLLRWKRFAVAAAMCILAVRA------V-------VVQLAFYLHMQTHVY-RRPAVF------S-------KPLIF 206 (289)
Q Consensus 157 ---lPplRlKr~p~laa~~Il~v~a------~-------iv~lg~~l~~~t~~~-g~p~~~------~-------~~V~~ 206 (289)
+|.+++++........++...+ + .+.++.....-...+ ++|... . .++++
T Consensus 79 ~r~l~~G~is~~~~~~~~~~~~~ia~~~g~~l~~~~~~~~l~l~~~~~~~~~~Yt~~P~~lky~glGe~~v~~~~g~~~v 158 (296)
T PRK05951 79 QHPIQAGIMTLGHLRVLGIALGAIALQLGWSLVLDRGIGAVTLALLGVFLWTCYMGPPFFLKYRWLGEHLVFYAWSHMLV 158 (296)
T ss_pred CCccccCCcCHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCCcccCCCCchHHHHHHHHHHHHH
Confidence 4445554443222111110000 0 001111000000001 112111 0 01111
Q ss_pred HHH-----------------HHHHHHHHHHHHhcCCChhhhHhcCCccchhhhChHHHHHHHHHHHHHHHHHHHHHHHhC
Q 022970 207 ATA-----------------FMSFFSVVIALFKDVPDLEGDKTFGIRTFTVRLGQKRVFWTCISLLEVAYTVAILVGATS 269 (289)
Q Consensus 207 lt~-----------------f~~~f~~~i~i~KDi~DieGDr~~Gi~Tl~i~lG~k~a~~l~~~ll~~ay~~~i~~~~~~ 269 (289)
+.. -..+++..+...||++|+|+||+.|+||+|+++|+|++ ++-..++..+|+..++..+..
T Consensus 159 lg~~~~~~~~~~~~~~~~sl~~~l~~~~il~~n~~~D~e~D~~~G~~Tlav~lG~~~a-~~~~~~~~~~~~~~~~~~~~g 237 (296)
T PRK05951 159 MGLIYVWLGNLSSPNLLAGVPLGLLMALVLLSNNLRDIEDDERKGIPTLAVIFGRRGA-ALYIFALLSPYVILQILLIAI 237 (296)
T ss_pred HHHHHHHhCcccHHHHHHHHHHHHHHHHHHHHCCCccchhHHHCCCeeeeeeEcHhhH-HHHHHHHHHHHHHHHHHHHHh
Confidence 111 11223455779999999999999999999999999999 665567788888777666654
No 26
>PRK12895 ubiA prenyltransferase; Reviewed
Probab=99.83 E-value=4.1e-19 Score=166.88 Aligned_cols=178 Identities=15% Similarity=0.168 Sum_probs=118.9
Q ss_pred HHHHHhhhccchhHHHHHHHHHHHHHhhcccCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhccc---------cc
Q 022970 88 LDAFYRFSRPHTVIGTALSIVSVALLAVEKVSDISPLFFTGVLEAIAAALMMNIYIVGLNQLSDIEIDK---------LP 158 (289)
Q Consensus 88 l~a~~~l~RPht~igt~l~vl~g~llA~~~~~~~~~~~~~~~l~~lva~l~~n~~~ngiNDyfD~EIDk---------lP 158 (289)
++.|+|++||+..+.+...++.|+++|.+.. .++.. ++..+++..++-.+++++|||+|+|||| +|
T Consensus 3 ~~~~~el~k~~~t~~al~~a~~g~~lA~~~~--~~~~~---l~l~~~~~~~~rsag~~~Ndi~Dr~iD~~~~RT~~RPLp 77 (286)
T PRK12895 3 FRDIVDYIKLEHTVFDLPFILAGYVIAAGHY--IHPIK---ILLILIAAVSARTSAMSINRIEGLRYDMINPRKKDWALV 77 (286)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHhcCCC--CCHHH---HHHHHHHHHHHHHHHHHHHhHHHhcccCCCCcCCCCCCC
Confidence 7899999999999999999999999985421 22211 1223445567788999999999999999 99
Q ss_pred chhhhHhHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHhcC--------------------------CCCc
Q 022970 159 LLRWKRFAVAAAMCILAVRAVVV------------QLAFYLHMQTHVYRR--------------------------PAVF 200 (289)
Q Consensus 159 plRlKr~p~laa~~Il~v~a~iv------------~lg~~l~~~t~~~g~--------------------------p~~~ 200 (289)
++|+++...+.....+...++.+ ....++....-..|| ...+
T Consensus 78 sG~is~~~A~~~~~~~~~~~~~~~~~ln~l~~~l~~~~~~l~~~yp~~KR~t~~~~~~lG~~~g~~~l~g~~Av~g~~~~ 157 (286)
T PRK12895 78 SGRIKMREAIAFTIIFIAIFEICTFLLNRLVFILSPIVIFLFIIDPFLKRYTAWRHIYMGSIIGLGVLAGYLAVIPAFPY 157 (286)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhCccccHHHHHHHHHhHHHHHHHHHcCCCCc
Confidence 99998775443322221111110 011111111100111 1111
Q ss_pred chHHHHHHHHHHHHHHHHHHHhcCCChhhhHhcCCccchhhhChHHHHHHHHHHHHHHHHHHHHHHHhCc
Q 022970 201 SKPLIFATAFMSFFSVVIALFKDVPDLEGDKTFGIRTFTVRLGQKRVFWTCISLLEVAYTVAILVGATSP 270 (289)
Q Consensus 201 ~~~V~~lt~f~~~f~~~i~i~KDi~DieGDr~~Gi~Tl~i~lG~k~a~~l~~~ll~~ay~~~i~~~~~~~ 270 (289)
....+++....++|+.+.++++|+||+|+||+.|++|+|+++|++++.+++..+..++.+..++.|....
T Consensus 158 ~~~~~~l~~~~~~W~~g~D~iYa~qD~e~D~~~Gv~S~a~~fG~~~~~~i~~~~~~~~~~~~~~~g~~~~ 227 (286)
T PRK12895 158 NLLIYIIFISSSLWIAGFDIIYVIPDIEYDKINGLKTIMNTYGIKNGLYISDIFHISSLILFWISGIYIR 227 (286)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHcCCCchHHHHCCccHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 1122344556677899999999999999999999999999999999998887666666666666665443
No 27
>PRK12886 ubiA prenyltransferase; Reviewed
Probab=99.82 E-value=2e-18 Score=162.04 Aligned_cols=179 Identities=16% Similarity=0.209 Sum_probs=117.7
Q ss_pred hHHHHHHHHhhhccchhHHHHHHHHHHHHHhhcccCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhccc-------
Q 022970 84 VINALDAFYRFSRPHTVIGTALSIVSVALLAVEKVSDISPLFFTGVLEAIAAALMMNIYIVGLNQLSDIEIDK------- 156 (289)
Q Consensus 84 ~~~~l~a~~~l~RPht~igt~l~vl~g~llA~~~~~~~~~~~~~~~l~~lva~l~~n~~~ngiNDyfD~EIDk------- 156 (289)
..++++.|+|++||++.++...+++.|+++|.+..++ +. .++.++++..++.+++|.+|||+|+|+|+
T Consensus 4 ~~~~~~~y~~L~r~~~~~~~~~~~~~g~~lA~~~~~~--~~---~l~~~~l~~~l~~~a~~~~Nd~~D~~iD~~~~RT~~ 78 (291)
T PRK12886 4 LLTKLKVFLEMIKFSHTLFALPFAGIGAVLAALGLPG--AS---QLDWILMAMVGARTAAMGFNRLIDAEIDARNPRTAG 78 (291)
T ss_pred hHHHHHHHHHHhCccchHHHHHHHHHHHHHhccCCCC--HH---HHHHHHHHHHHHHHHHHHHHhHHhhccCCCCCCCCC
Confidence 4577899999999999999999999999988442222 21 12334556667778899999999999999
Q ss_pred --ccchhhhHhHHHHHHHHHHHHH-----------HHHH-HHHH-HHHHHHHhcCCCCc---------------------
Q 022970 157 --LPLLRWKRFAVAAAMCILAVRA-----------VVVQ-LAFY-LHMQTHVYRRPAVF--------------------- 200 (289)
Q Consensus 157 --lPplRlKr~p~laa~~Il~v~a-----------~iv~-lg~~-l~~~t~~~g~p~~~--------------------- 200 (289)
+|++|++....+.......... ..+. ++.. ...++. .|+-..+
T Consensus 79 RPL~sG~is~~~A~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~Y~~-~Kr~t~~~~~~~g~~~~~~~l~g~~a~~ 157 (291)
T PRK12886 79 RAIPAGLISKGSAILFIVLSSLLMLFAAWFLNPLCLYLSPPALFFLLLYSY-CKRFTALAHVVLGFCLALAPLGAWIAIR 157 (291)
T ss_pred CCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hhccccccHHHHHHHHHHHHHHHHHHHc
Confidence 8899997765332211110000 0000 0010 111122 1221111
Q ss_pred ---chHHHHHHHHHHHHHHHHHHHhcCCChhhhHhcCCccchhhhChHHHHHHHHHHHHHHHHHHHHHHHh
Q 022970 201 ---SKPLIFATAFMSFFSVVIALFKDVPDLEGDKTFGIRTFTVRLGQKRVFWTCISLLEVAYTVAILVGAT 268 (289)
Q Consensus 201 ---~~~V~~lt~f~~~f~~~i~i~KDi~DieGDr~~Gi~Tl~i~lG~k~a~~l~~~ll~~ay~~~i~~~~~ 268 (289)
+...+++....++|+.+.+++++++|.|+||+.|++|+|+++|++++.+++.......+...++.+..
T Consensus 158 g~~~~~~~ll~~~~~lw~~~~~~~~a~~D~e~D~~aGi~slpv~~G~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (291)
T PRK12886 158 GTIELPAILLGLAVLFWVAGFDILYALQDLEFDRKEGLHSIPAKLGVNGSLWIARVFHLLMIGFLFALGIS 228 (291)
T ss_pred CCCcHHHHHHHHHHHHHHHHHHHHHHhccHHhHHHcCCcCcchhcCchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 11122223334566778999999999999999999999999999999998877767777666665554
No 28
>PLN02922 prenyltransferase
Probab=99.82 E-value=1.1e-18 Score=165.72 Aligned_cols=182 Identities=15% Similarity=0.180 Sum_probs=115.8
Q ss_pred HHHHHHHhhhccchhHHHHHHHHHHHHHhhcccCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhhhhh--ccc---ccch
Q 022970 86 NALDAFYRFSRPHTVIGTALSIVSVALLAVEKVSDISPLFFTGVLEAIAAALMMNIYIVGLNQLSDIE--IDK---LPLL 160 (289)
Q Consensus 86 ~~l~a~~~l~RPht~igt~l~vl~g~llA~~~~~~~~~~~~~~~l~~lva~l~~n~~~ngiNDyfD~E--IDk---lPpl 160 (289)
++++.|++-+||+|...+..+++.|..+|......+++. .++.+++++++.++..|.+|||||++ +|+ -.+.
T Consensus 13 ~~~~~w~~a~Rp~tl~~s~~pv~lG~a~A~~~~g~f~~~---~~ll~ll~~~l~q~~~N~~NDy~D~~~G~D~~~~~~~~ 89 (315)
T PLN02922 13 SRATLWWRAIKLPMYSVALVPLTVGAAAAYLQTGLFDAR---RYGTLLLSSVLVITWLNLSNDAYDADTGVDKNKKESVV 89 (315)
T ss_pred cHHHHHHHHhCcchHHHHHHHHHHHHHHHHHcCCCccHH---HHHHHHHHHHHHHHHHHHHhhhhHhccCcCcccCCCCC
Confidence 458889999999999999999999999986533456643 33556888999999999999999988 665 1111
Q ss_pred hh--hHhHH--HHHHHHH----HHHHH--------HHHHHHHHHHHHHHh-cCCCC------------------------
Q 022970 161 RW--KRFAV--AAAMCIL----AVRAV--------VVQLAFYLHMQTHVY-RRPAV------------------------ 199 (289)
Q Consensus 161 Rl--Kr~p~--laa~~Il----~v~a~--------iv~lg~~l~~~t~~~-g~p~~------------------------ 199 (289)
|. ++... .+..|.+ ....+ ++.+|......-..+ ++|..
T Consensus 90 ~~~~s~~~v~~~~~~~~~la~~g~~ll~~~~~~~~~l~iG~~g~~~~~~Yt~gP~pl~y~gLGE~~v~i~fG~l~v~g~y 169 (315)
T PLN02922 90 NLVGSRRGVLAAAIGCLALGAAGLVWASLVAGNIRVILLLAAAILCGYVYQCPPFRLSYKGLGEPLCFAAFGPLATTAFY 169 (315)
T ss_pred CcccCHHHHHHHHHHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHHhcCCcccccCcchHHHHHHHHHHHHHHHHH
Confidence 11 11111 1111100 00000 111111100000001 11111
Q ss_pred ----------------cchHHHHHHHHHHHHHHHHHHHhcCCChhhhHhcCCccchhhhChHHHHHHHHHHHHHHHHHHH
Q 022970 200 ----------------FSKPLIFATAFMSFFSVVIALFKDVPDLEGDKTFGIRTFTVRLGQKRVFWTCISLLEVAYTVAI 263 (289)
Q Consensus 200 ----------------~~~~V~~lt~f~~~f~~~i~i~KDi~DieGDr~~Gi~Tl~i~lG~k~a~~l~~~ll~~ay~~~i 263 (289)
++..++.+..-..+.+.++...||++|+|.||+.|+||+|+++|+|++.++-.+++..+|++.+
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~l~slp~gll~~~iL~~Nn~rD~e~D~~~Gk~TL~v~lG~~~a~~l~~~l~~~~y~~~i 249 (315)
T PLN02922 170 LALASGAGGSEMAILPLTPTVLSASVLVGLTTTLILFCSHFHQIDGDRAVGKMSPLVRLGTEKGSRVVRWAVLLLYSLLA 249 (315)
T ss_pred HHhcccccccccccccccHHHHHHHHHHHHHHHHHHHHccCcchhhHHHcCccceeeEEChHHHHHHHHHHHHHHHHHHH
Confidence 0111112222223345578899999999999999999999999999999999999999999888
Q ss_pred HHHHhCc
Q 022970 264 LVGATSP 270 (289)
Q Consensus 264 ~~~~~~~ 270 (289)
...+...
T Consensus 250 ~~v~~~~ 256 (315)
T PLN02922 250 ALGLLKA 256 (315)
T ss_pred HHHHHhh
Confidence 7776643
No 29
>PRK12888 ubiA prenyltransferase; Reviewed
Probab=99.82 E-value=1.8e-18 Score=162.02 Aligned_cols=177 Identities=16% Similarity=0.172 Sum_probs=119.0
Q ss_pred HHHHHhhhccchhHHHHHHHHHHHHHhhcc-cCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhccc---------c
Q 022970 88 LDAFYRFSRPHTVIGTALSIVSVALLAVEK-VSDISPLFFTGVLEAIAAALMMNIYIVGLNQLSDIEIDK---------L 157 (289)
Q Consensus 88 l~a~~~l~RPht~igt~l~vl~g~llA~~~-~~~~~~~~~~~~l~~lva~l~~n~~~ngiNDyfD~EIDk---------l 157 (289)
++.|+|++||++.+.+...++.+++++... ...+++. .++..+++.+++..++|.+|||+|+|+|+ +
T Consensus 2 ~~~~~~l~r~~~~~~a~~~~~~~~~~~~~~~~~~~~~~---~~~l~~l~~~l~~~a~~~~Nd~~Dr~iD~~~~RT~~RPL 78 (284)
T PRK12888 2 VRAFLRLVAIEHSVFALPFAYIAALTAMFASDGSVHWA---DLLLVTVAMVGARTFAMAANRIIDREIDARNPRTAGREL 78 (284)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHH---HHHHHHHHHHHHHHHHHHHHhHHhhCCCCCCCCCCCCCC
Confidence 689999999999999999888888877421 1223322 22345667778899999999999999999 8
Q ss_pred cchhhhHhHHHHHHHHHHHHH-----------H-HHHH---HHHHHHHHHHhcCCC------------------------
Q 022970 158 PLLRWKRFAVAAAMCILAVRA-----------V-VVQL---AFYLHMQTHVYRRPA------------------------ 198 (289)
Q Consensus 158 PplRlKr~p~laa~~Il~v~a-----------~-iv~l---g~~l~~~t~~~g~p~------------------------ 198 (289)
|++|++....+.........+ . ...+ ..+.|. . .|+..
T Consensus 79 ~sG~is~~~a~~~~~~~~~~~l~l~~~l~~~~~~l~~~~~~~~~~Y~--~-~Kr~t~~~~~~lg~~~~~~~l~g~~a~~g 155 (284)
T PRK12888 79 VTGAVSVRTAWTGALVALAVFLGAAALLNPLCLALAPLAVAPLVVYP--Y-AKRFTNFPHAILGLAQAVGPVGAWIAVTG 155 (284)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH--H-hhcccchhhHHHHHHHHHHHHHHHHHHcC
Confidence 999997765333222111100 0 0011 111221 1 11111
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHhcCCChhhhHhcCCccchhhhChHHHHHHHHHHHHHHHHHHHHHHHhCc
Q 022970 199 VFSKPLIFATAFMSFFSVVIALFKDVPDLEGDKTFGIRTFTVRLGQKRVFWTCISLLEVAYTVAILVGATSP 270 (289)
Q Consensus 199 ~~~~~V~~lt~f~~~f~~~i~i~KDi~DieGDr~~Gi~Tl~i~lG~k~a~~l~~~ll~~ay~~~i~~~~~~~ 270 (289)
..+...+++....++++.+.+++++++|+|+||+.|+||+|+++|+|++.+++..+..+.++..++.+....
T Consensus 156 ~~~~~~~ll~~~~~~w~~~~~~i~a~~D~e~D~~~Gv~sl~v~~G~~~a~~~~~~~~~~~~~ll~~~~~~~~ 227 (284)
T PRK12888 156 TWSWPAVLLGLAVGLWIGGFDLIYACQDAEVDRRIGVRSVPARFGVRAALWASRVAHVVTFALFVWFGLAVG 227 (284)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHCCCcCcchhhCchhHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 112222334445567888999999999999999999999999999999998877777777776666666543
No 30
>TIGR02235 menA_cyano-plnt 1,4-dihydroxy-2-naphthoate phytyltransferase. This family of phytyltransferases, found in plants and cyanobacteria, are involved in the biosythesis of phylloquinone (Vitamin K1). Phylloquinone is a critical component of photosystem I. The closely related MenA enzyme from bacteria transfers a prenyl group (which only differs in the saturation of the isoprenyl groups) in the biosynthesis of menaquinone. Activity towards both substrates in certain organisms should be considered a possibility.
Probab=99.81 E-value=1.2e-18 Score=163.29 Aligned_cols=176 Identities=18% Similarity=0.172 Sum_probs=111.1
Q ss_pred HHhhhccchhHHHHHHHHHHHHHhhcccCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhhhhh--cccc---cchhh---
Q 022970 91 FYRFSRPHTVIGTALSIVSVALLAVEKVSDISPLFFTGVLEAIAAALMMNIYIVGLNQLSDIE--IDKL---PLLRW--- 162 (289)
Q Consensus 91 ~~~l~RPht~igt~l~vl~g~llA~~~~~~~~~~~~~~~l~~lva~l~~n~~~ngiNDyfD~E--IDkl---PplRl--- 162 (289)
|++-+||++...+..+++.|..+|......+++.. ++.+++++++.++..|.+|||||++ .|+- .+.|.
T Consensus 2 w~~a~Rp~tl~~s~~pv~lG~alA~~~~~~f~~~~---~ll~li~~l~~q~~~N~~Ndy~D~~~G~D~~~~~~~~~~~~~ 78 (285)
T TIGR02235 2 WLAAIKPPLYSVAVMPILVGTAVAWGQGGVFHLDR---FALFLIAAILILAWINLTNDVFDSDTGIDRFKLHSIVNLTGS 78 (285)
T ss_pred hHHHhhhhHHHHHHHHHHHHHHHHHHcCCCcCHHH---HHHHHHHHHHHHHHHHHHHhHHHHhcCCCccccCCcccccCc
Confidence 56889999999999999999999865334566443 3456778889999999999999987 5761 22111
Q ss_pred -hHhHHHHHHHHH--HH--------HH-HHHHHHHHHHHHHHHh-cCCCC------------------------------
Q 022970 163 -KRFAVAAAMCIL--AV--------RA-VVVQLAFYLHMQTHVY-RRPAV------------------------------ 199 (289)
Q Consensus 163 -Kr~p~laa~~Il--~v--------~a-~iv~lg~~l~~~t~~~-g~p~~------------------------------ 199 (289)
|+....+..+.+ .+ ++ .++.+|.........+ ++|..
T Consensus 79 ~~~v~~~~~~~~~ia~~~g~~L~~~~~~~~l~lg~~g~~~~~~Yt~gP~~l~y~gLGE~~v~l~~G~l~v~g~~yvqt~~ 158 (285)
T TIGR02235 79 RSLVFWLANFFLLIGLVGIAALSWRWQITVLALVGLCCFLGYLYQGPPFRLGYQGLGEPICWLCFGPLAIAAALYAQSQS 158 (285)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhcCCCcccCCCCccHHHHHHHHHHHHHHHHHHHhCCc
Confidence 111111111110 00 00 0011111100000001 11111
Q ss_pred cchHHHHHHHHHHHHHHHHHHHhcCCChhhhHhcCCccchhhhChHHHHHHHHHHHHHHHHHHHHHHHhC
Q 022970 200 FSKPLIFATAFMSFFSVVIALFKDVPDLEGDKTFGIRTFTVRLGQKRVFWTCISLLEVAYTVAILVGATS 269 (289)
Q Consensus 200 ~~~~V~~lt~f~~~f~~~i~i~KDi~DieGDr~~Gi~Tl~i~lG~k~a~~l~~~ll~~ay~~~i~~~~~~ 269 (289)
++...+....-..+.+.++...||++|+|.||+.|.||+|+++|+|++.++-..++..+|++.+...+..
T Consensus 159 ~~~~~~l~sl~~gl~~~~iL~~Nn~rD~e~D~~~Gk~TL~v~lG~~~a~~l~~~l~~~~y~~~i~~v~~~ 228 (285)
T TIGR02235 159 FSLIPWKASILVGLATTLILFCSHFHQVEDDLAHGKRSPVVRLGTKLAAKIVPWVISLSYVVLLIAVIGG 228 (285)
T ss_pred CcHHHHHHHHHHHHHHHHHHHhcCCccchhHHHcCCcceeheecHHhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 1111222222333455678899999999999999999999999999999999999999999877665544
No 31
>PRK12878 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed
Probab=99.81 E-value=9.1e-18 Score=159.32 Aligned_cols=175 Identities=16% Similarity=0.098 Sum_probs=116.3
Q ss_pred hhhHHHHHHHHhhh---ccchhHHHHHHHHHHHHHhhcccC---CCChHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcc
Q 022970 82 NSVINALDAFYRFS---RPHTVIGTALSIVSVALLAVEKVS---DISPLFFTGVLEAIAAALMMNIYIVGLNQLSDIEID 155 (289)
Q Consensus 82 ~~~~~~l~a~~~l~---RPht~igt~l~vl~g~llA~~~~~---~~~~~~~~~~l~~lva~l~~n~~~ngiNDyfD~EID 155 (289)
..+.++++.|+|++ ||++.....++++.|+++|.+... ..++. .++..+++.+++.+++|.+|||+|+|+|
T Consensus 24 ~~~~~~~~~y~~L~R~~kP~~~~l~~~p~~~G~~lA~~~~~~~~~~~~~---~~~l~~l~~~l~~~a~~~~Nd~~Dr~iD 100 (314)
T PRK12878 24 RRLPPWLRPYAQLARWDRPIGWWLLLWPCWWSAALAAGAAADLGLLLLW---HLFLFFVGAIAMRGAGCTYNDIVDRDID 100 (314)
T ss_pred hhcchhHHHHHHHHccccchhhHHHHHHHHHHHHHhcccccCCCCCCHH---HHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 33667899999999 999999999999999999854211 23321 2345577888889999999999999999
Q ss_pred c---------ccchhhhHhHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHhcC---C-------CC--
Q 022970 156 K---------LPLLRWKRFAVAAAMCILAVRAVVV---------------QLAFYLHMQTHVYRR---P-------AV-- 199 (289)
Q Consensus 156 k---------lPplRlKr~p~laa~~Il~v~a~iv---------------~lg~~l~~~t~~~g~---p-------~~-- 199 (289)
+ +|.+|++....+....++.+.++.+ .+..+.| +..+.. | ..
T Consensus 101 ~~~~Rt~~RPl~sG~is~~~a~~~~~~~~~~g~~l~~~~~~~~~~l~~~~~~~~~~Y--~~~KR~t~~~~~~~Gl~~~~~ 178 (314)
T PRK12878 101 AKVARTRSRPLPSGQVSRKQAKVFMVLQALVGLAVLLQFNWFAIALGIASLAIVAAY--PFMKRITWWPQFFLGLAFSWG 178 (314)
T ss_pred cCCCCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH--HHHHhcCCcchHHHHHHHHHH
Confidence 7 8899987775443332222111111 1111122 221110 1 00
Q ss_pred -----------cchHHHHHHHHHHHHHHHHHHHhcCCChhhhHhcCCccchhhhChHHHHHHHHHHHHHHHHH
Q 022970 200 -----------FSKPLIFATAFMSFFSVVIALFKDVPDLEGDKTFGIRTFTVRLGQKRVFWTCISLLEVAYTV 261 (289)
Q Consensus 200 -----------~~~~V~~lt~f~~~f~~~i~i~KDi~DieGDr~~Gi~Tl~i~lG~k~a~~l~~~ll~~ay~~ 261 (289)
.+...+.+....++++.+.+.+++++|+|+||+.|++|+|+++|++++.++......+..+.
T Consensus 179 ~l~g~~a~~g~~~~~~~~l~~~~~~w~~~~~~~~a~~D~e~D~~aGi~slpv~~G~~~~~~~~~~~~~~~~~~ 251 (314)
T PRK12878 179 ALMGWAAHFGSLSLAAVLLYAGSIAWTIGYDTIYAHQDKEDDALIGVKSTARLFGDHTKTWLVLFYGLAVLLM 251 (314)
T ss_pred HHHHHHHHhCCCchHHHHHHHHHHHHHHHHHHHHHhhhHhhHHHcCCcccchHhchhhHHHHHHHHHHHHHHH
Confidence 11111222334556778889999999999999999999999999999998875555444433
No 32
>PLN02809 4-hydroxybenzoate nonaprenyltransferase
Probab=99.79 E-value=7.9e-18 Score=158.15 Aligned_cols=179 Identities=17% Similarity=0.127 Sum_probs=112.0
Q ss_pred HHHHHHHhhhccchhHHHHHHHH---HHHHHhhcccCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhccc------
Q 022970 86 NALDAFYRFSRPHTVIGTALSIV---SVALLAVEKVSDISPLFFTGVLEAIAAALMMNIYIVGLNQLSDIEIDK------ 156 (289)
Q Consensus 86 ~~l~a~~~l~RPht~igt~l~vl---~g~llA~~~~~~~~~~~~~~~l~~lva~l~~n~~~ngiNDyfD~EIDk------ 156 (289)
++++.|+|++|.++..|+.+-.+ .+..++.......++. .++..+++..++.++++++||++|+||||
T Consensus 4 ~~~~~y~~L~Rl~kp~~~~l~~~p~~~~~~l~a~~~~~~~~~---~l~l~~~g~~~~~~a~~~~Nd~~Dr~iD~~~~RT~ 80 (289)
T PLN02809 4 PSLRPYAKLARLDKPIGTWLLAWPCMWSIALAAPPGSLPDLK---MLALFGCGALLLRGAGCTINDLLDRDIDKKVERTK 80 (289)
T ss_pred hhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhccCCCCcHH---HHHHHHHHHHHHHHHHHHHHhhHHhccccCCCCCC
Confidence 57899999999999998877662 3333332111112221 22345666677889999999999999997
Q ss_pred ---ccchhhhHhHHHHHHHHHHHHHHHH------------HHHH-HHHHHHHHhcCCCC---------------------
Q 022970 157 ---LPLLRWKRFAVAAAMCILAVRAVVV------------QLAF-YLHMQTHVYRRPAV--------------------- 199 (289)
Q Consensus 157 ---lPplRlKr~p~laa~~Il~v~a~iv------------~lg~-~l~~~t~~~g~p~~--------------------- 199 (289)
+|++|++....+....++...++.+ ..+. +.+.++. .||-..
T Consensus 81 ~RPL~sG~is~~~A~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~Y~~-~KR~t~~~~~~lg~~~~~~~l~g~~av 159 (289)
T PLN02809 81 LRPIASGALTPFQGVGFLGAQLLLGLGILLQLNNYSRILGASSLLLVFTYPL-MKRFTFWPQAFLGLTFNWGALLGWAAV 159 (289)
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhH-HHhcCcchHHHHHHHHHHHHHHHHHHH
Confidence 8899997775443222221111100 0011 1112222 222111
Q ss_pred ---cchH-HHHHHHHHHHHHHHHHHHhcCCChhhhHhcCCccchhhhChHHHHHHHHHHHHHHHHHHHHHHHhC
Q 022970 200 ---FSKP-LIFATAFMSFFSVVIALFKDVPDLEGDKTFGIRTFTVRLGQKRVFWTCISLLEVAYTVAILVGATS 269 (289)
Q Consensus 200 ---~~~~-V~~lt~f~~~f~~~i~i~KDi~DieGDr~~Gi~Tl~i~lG~k~a~~l~~~ll~~ay~~~i~~~~~~ 269 (289)
.+.. +..+.....+|+.+.+++.+++|+|+||+.|++|+|+++|++...+++. +...+|+..+++|...
T Consensus 160 ~g~~~~~~~~~l~~~~~~W~~~~d~~ya~~D~e~D~~~Gi~sl~v~~G~~~~~~i~~-~~~~~~~~l~~~g~~~ 232 (289)
T PLN02809 160 KGSLDPAVVLPLYASGVCWTLVYDTIYAHQDKEDDLKVGVKSTALRFGDDTKLWLTG-FGAASIGGLALSGYNA 232 (289)
T ss_pred hCCCChHHHHHHHHHHHHHHHHHHHHHHHhchhhHHhCCCcccchhhcHHHHHHHHH-HHHHHHHHHHHHHHHh
Confidence 1111 1113334445677889999999999999999999999999998888774 6666777777777644
No 33
>PRK12848 ubiA 4-hydroxybenzoate octaprenyltransferase; Reviewed
Probab=99.79 E-value=1.8e-17 Score=154.33 Aligned_cols=174 Identities=16% Similarity=0.147 Sum_probs=104.8
Q ss_pred HHHHHHHhhhccchhHHHH---HHHHHHHHHhhcccCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhccc------
Q 022970 86 NALDAFYRFSRPHTVIGTA---LSIVSVALLAVEKVSDISPLFFTGVLEAIAAALMMNIYIVGLNQLSDIEIDK------ 156 (289)
Q Consensus 86 ~~l~a~~~l~RPht~igt~---l~vl~g~llA~~~~~~~~~~~~~~~l~~lva~l~~n~~~ngiNDyfD~EIDk------ 156 (289)
+++++|+|++|||+..++. ++++.|+++|.+... ++. .++.++++.+++.+++|.+|||+|+|+|+
T Consensus 3 ~~~~~y~~L~R~~kp~~~~l~~~p~~~g~~la~~~~~--~~~---~~~l~~~g~~l~~~a~~~~Nd~~D~~iD~~~~Rt~ 77 (282)
T PRK12848 3 NRLLAYARLMRLDKPIGTLLLLWPTLWALWLAADGIP--DLW---VLVVFVLGVFLMRAAGCVINDYADRDFDGHVKRTK 77 (282)
T ss_pred hhHHHHHHHHCccchHHHHHHHHHHHHHHHHHcCCCC--CHH---HHHHHHHHHHHHHHHHHHHHhhHHhccCCCCCCCC
Confidence 3689999999977766555 557778877743222 221 22334556667788999999999999997
Q ss_pred ---ccchhhhHhHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHhcCCCC-------------------
Q 022970 157 ---LPLLRWKRFAVAAAMCILAVRAVV---------------VQLAFYLHMQTHVYRRPAV------------------- 199 (289)
Q Consensus 157 ---lPplRlKr~p~laa~~Il~v~a~i---------------v~lg~~l~~~t~~~g~p~~------------------- 199 (289)
+|++|++....+....++...+++ ..+..++| +..++....
T Consensus 78 ~RPl~sG~is~~~a~~~~~~l~~~~~~l~~~l~~~~~~l~~~~~~~~~~Y--~~~Kr~~~~~~~~~g~~~g~~~~~g~~a 155 (282)
T PRK12848 78 NRPLASGAVSEKEALALFVVLVLVAFLLVLTLNTLTIWLSVAALALAWIY--PFMKRYTHLPQVVLGAAFGWGIPMAFAA 155 (282)
T ss_pred CCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH--HhHHhcCcccHHHHHHHHHHHHHHHHHH
Confidence 899999777543322222111110 01111223 221211100
Q ss_pred ----cchHHHHHHHHHHHHHHHHHHHhcCCChhhhHhcCCccchhhhChHHHHHHHHHHHHHHHHHHHHHHH
Q 022970 200 ----FSKPLIFATAFMSFFSVVIALFKDVPDLEGDKTFGIRTFTVRLGQKRVFWTCISLLEVAYTVAILVGA 267 (289)
Q Consensus 200 ----~~~~V~~lt~f~~~f~~~i~i~KDi~DieGDr~~Gi~Tl~i~lG~k~a~~l~~~ll~~ay~~~i~~~~ 267 (289)
.+...+++....++++.+.....+++|+|+||+.|++|+|+++|+|++.+++...... .....+++.
T Consensus 156 ~~~~~~~~~~~l~~~~~~w~~~~~~~~a~~D~e~D~~~G~~tlpv~~G~~~~~~~~~~~~~~-~~~~~~~~~ 226 (282)
T PRK12848 156 VQGSVPLEAWLLFLANILWTVAYDTQYAMVDRDDDLKIGIKSTAILFGRYDKLIIGLLQLAT-LALLAWAGW 226 (282)
T ss_pred HhCCCcHHHHHHHHHHHHHHHHHHHHHHhccHhhHHHcCCccccHHhccccHHHHHHHHHHH-HHHHHHHHH
Confidence 1111112222334456677788889999999999999999999999988877444333 333333443
No 34
>PRK04375 protoheme IX farnesyltransferase; Provisional
Probab=99.79 E-value=8.7e-18 Score=157.64 Aligned_cols=175 Identities=15% Similarity=0.083 Sum_probs=108.7
Q ss_pred HHHHHHHHhhhccchhHHHHHHHHHHHHHhhcccCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhccc--------
Q 022970 85 INALDAFYRFSRPHTVIGTALSIVSVALLAVEKVSDISPLFFTGVLEAIAAALMMNIYIVGLNQLSDIEIDK-------- 156 (289)
Q Consensus 85 ~~~l~a~~~l~RPht~igt~l~vl~g~llA~~~~~~~~~~~~~~~l~~lva~l~~n~~~ngiNDyfD~EIDk-------- 156 (289)
..++++|+|++||++++...++++.|+++|.+. .+++. .++.++++..++.+++|.+|||||+|+|+
T Consensus 7 ~~~~~~y~~L~rp~~~~~~~~~~~~G~~la~~~--~~~~~---~~~l~~l~~~l~~aa~~~iNd~~D~~iD~~~~Rt~~R 81 (296)
T PRK04375 7 RATLKDYLALTKPRVISLNLFTALGGMLLAPPG--VPPLL---LLLLTLLGIALVAGAAGALNNYIDRDIDAKMERTKNR 81 (296)
T ss_pred hhhHHHHHHHhHHHHHHHHHHHHHHHHHHhcCC--CCCHH---HHHHHHHHHHHHHHHHHHHHhHHhhccCCCCCccCCC
Confidence 356999999999999999999999999998532 23332 22345667777889999999999999999
Q ss_pred -ccchhhhHhHHHHHHHHHHH------------HHHHH-HHHH--HHHHHHHHhcCCCCcch------------------
Q 022970 157 -LPLLRWKRFAVAAAMCILAV------------RAVVV-QLAF--YLHMQTHVYRRPAVFSK------------------ 202 (289)
Q Consensus 157 -lPplRlKr~p~laa~~Il~v------------~a~iv-~lg~--~l~~~t~~~g~p~~~~~------------------ 202 (289)
+|++|+++...+.....+.. .+..+ .+++ +...++..+|+...++.
T Consensus 82 pl~sG~is~~~a~~~~~~l~~~g~~l~~~l~~~~~~~l~~~~~~~~~~~Ys~~lKr~~~~~~~v~~~~g~~~~l~g~~a~ 161 (296)
T PRK04375 82 PLVTGRISPREALIFGLVLGVLGFLLLGLFVNPLAAWLTLAGIFFYVVVYTLWLKRRTPQNIVIGGAAGAMPPLIGWAAV 161 (296)
T ss_pred CCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhccchhcCCccchHHHHHHHHhHHHHHHHHh
Confidence 88999977753322211111 11111 1111 22222321232112211
Q ss_pred ------HHHHHHHHHHHHHHHHHHHhcCCChhhhHhcCCccchhhhChHHHHHHHHHHHHHHHHHHHH
Q 022970 203 ------PLIFATAFMSFFSVVIALFKDVPDLEGDKTFGIRTFTVRLGQKRVFWTCISLLEVAYTVAIL 264 (289)
Q Consensus 203 ------~V~~lt~f~~~f~~~i~i~KDi~DieGDr~~Gi~Tl~i~lG~k~a~~l~~~ll~~ay~~~i~ 264 (289)
..+++....+++.........++|.|.||+.|+||+|+++|++++.+++.....+.-...++
T Consensus 162 ~g~~~~~~~~l~~~~~lw~~~~~~~~~~~d~~D~~~~G~~tlpv~~G~~~~~~~~~~~~~~~~~~~~~ 229 (296)
T PRK04375 162 TGSLSWEALILFLIIFLWTPPHFWALAIFRKDDYAAAGIPMLPVVKGIRVTKRQILLYTVLLVAVSLL 229 (296)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHcCCCccceeeCHHHHHHHHHHHHHHHHHHHHH
Confidence 11122333444555555555567777789999999999999999888665544444333333
No 35
>PRK12869 ubiA protoheme IX farnesyltransferase; Reviewed
Probab=99.78 E-value=8.5e-18 Score=156.52 Aligned_cols=169 Identities=15% Similarity=0.151 Sum_probs=107.5
Q ss_pred HHHHHHhhhccchhHHHHHHHHHHHHHhhcccCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhccc---------c
Q 022970 87 ALDAFYRFSRPHTVIGTALSIVSVALLAVEKVSDISPLFFTGVLEAIAAALMMNIYIVGLNQLSDIEIDK---------L 157 (289)
Q Consensus 87 ~l~a~~~l~RPht~igt~l~vl~g~llA~~~~~~~~~~~~~~~l~~lva~l~~n~~~ngiNDyfD~EIDk---------l 157 (289)
++++|+|++||++.....++++.|+++|.+. ..++. .++.++++..++.+++|.+|||+|+|+|+ +
T Consensus 1 ~~~~~~~l~rp~~~~~~~~~~~~g~~la~~~--~~~~~---~~~l~~~~~~l~~~a~~~~Nd~~D~~iD~~~~Rt~~RPl 75 (279)
T PRK12869 1 KIKAYLKLLKPRVIWLLDLAAVAGYFLAAKH--GVSWL---PLIPLLIGGTLASGGSAAFNHGIERDIDKVMSRTSKRPT 75 (279)
T ss_pred CHHHHHHHhHHHHHHHHHHHHHHHHHHhccC--CCCHH---HHHHHHHHHHHHHHHHHHHhchHhcCCCCCCCCCCCCCc
Confidence 3689999999999999999999999988432 23322 12344666677789999999999999999 8
Q ss_pred cchhhhHhHHHHHHHHHHHH-------------HHHHHHH--HHHHHHHHHhcCCCCcch--------------------
Q 022970 158 PLLRWKRFAVAAAMCILAVR-------------AVVVQLA--FYLHMQTHVYRRPAVFSK-------------------- 202 (289)
Q Consensus 158 PplRlKr~p~laa~~Il~v~-------------a~iv~lg--~~l~~~t~~~g~p~~~~~-------------------- 202 (289)
|++|++....+.....+... +....++ .+.+.++...|+-..++.
T Consensus 76 ~sG~is~~~a~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~Yt~~lKr~~~~~~~v~~~~g~~~~l~g~~a~~g 155 (279)
T PRK12869 76 PVGLVNRKEALAVGSALSALGTALGFLLLGPLTALFIALGWFFYAVVYTIWLKPRTWLNIVIGGFAGNAAALAGYASGTG 155 (279)
T ss_pred CCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCcccccCChHHHHHHHHHHHHHHHHHHHHHhC
Confidence 89999776533222111010 1111111 122223321233111111
Q ss_pred ----HHHHHHHHHHHHHHHHHHHhcCCChhhhHhcCCccchhhhChHHHHHHHHHHHHHHHH
Q 022970 203 ----PLIFATAFMSFFSVVIALFKDVPDLEGDKTFGIRTFTVRLGQKRVFWTCISLLEVAYT 260 (289)
Q Consensus 203 ----~V~~lt~f~~~f~~~i~i~KDi~DieGDr~~Gi~Tl~i~lG~k~a~~l~~~ll~~ay~ 260 (289)
..+++...++++..+.....+.+|.|.|++.|++|+|+++|+|++.++......+.-+
T Consensus 156 ~~~~~~~ll~~~~~~w~~~~~~~l~~~d~edd~~~G~~tlpv~~G~~~a~~~~~~~~~~~~~ 217 (279)
T PRK12869 156 SLDLEAVLLSFLIYLWTPGHIWSLALKYREDYRRAGVPMLPAVVGEKTSVRAISISNALMIP 217 (279)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHcCCeecceeecHHHHHHHHHHHHHHHHH
Confidence 1122223334455566656688899999999999999999999998876555444333
No 36
>TIGR00751 menA 1,4-dihydroxy-2-naphthoate octaprenyltransferase. This membrane-associated enzyme converts 1,4-dihydroxy-2-naphthoic acid (DHNA) to demethylmenaquinone, a step in menaquinone biosynthesis.
Probab=99.78 E-value=1.3e-17 Score=156.37 Aligned_cols=169 Identities=21% Similarity=0.184 Sum_probs=105.5
Q ss_pred ccchhHHHHHHHHHHHHHhhcccCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhhhhh--ccc---------ccchhhhH
Q 022970 96 RPHTVIGTALSIVSVALLAVEKVSDISPLFFTGVLEAIAAALMMNIYIVGLNQLSDIE--IDK---------LPLLRWKR 164 (289)
Q Consensus 96 RPht~igt~l~vl~g~llA~~~~~~~~~~~~~~~l~~lva~l~~n~~~ngiNDyfD~E--IDk---------lPplRlKr 164 (289)
||+|...+..+++.|..+|.... .+++. .++.++++++++++..|.+|||||.+ +|+ ++.+.++.
T Consensus 1 Rp~tl~~s~~pv~lG~ala~~~~-~f~~~---~~ll~~~~~~~~q~~~N~~NDy~D~~~G~D~~~~~~~~r~i~~g~is~ 76 (284)
T TIGR00751 1 RPKTLPLAIAPIVAGTALAAWLH-AFVWL---VALLALATAVLLQILSNYANDYGDGIKGSDTDDRIGPLRGVQKGLITP 76 (284)
T ss_pred CCchHHHHHHHHHHHHHHHHHcC-CccHH---HHHHHHHHHHHHHHHHHHHHhHHHHhcCCChhhccCCcchhcCCCCCH
Confidence 99999999999999999985432 56643 33556788889999999999999995 353 33333322
Q ss_pred hHHHHHHHHH----HHHHH---------------HHHHHHHHHHHHHHh-cCCCC--cc----h-------HHHH-----
Q 022970 165 FAVAAAMCIL----AVRAV---------------VVQLAFYLHMQTHVY-RRPAV--FS----K-------PLIF----- 206 (289)
Q Consensus 165 ~p~laa~~Il----~v~a~---------------iv~lg~~l~~~t~~~-g~p~~--~~----~-------~V~~----- 206 (289)
........++ .+.++ .+.+|.....--..+ ++|.. .. . ++++
T Consensus 77 ~~v~~~~~~~~~~a~~~Gi~l~~~~~~~~~~~~~~l~lg~~~~~~~~~Yt~gP~~l~y~gLGE~~v~i~~G~l~v~g~~y 156 (284)
T TIGR00751 77 REVKTALITSVALGALSGLVLALLAAPNLSDLFWFIALGALCIAAAITYTVGSKPYGYAGLGDISVLVFFGPLAVLGTQY 156 (284)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccchhhhHHHHHHHHHHHHHhHhhcCCCCccccCchHHHHHHHHHHHHHHHHHHH
Confidence 2211111110 00111 111111100000001 11111 10 0 1111
Q ss_pred ------------HHHHHHHHHHHHHHHhcCCChhhhHhcCCccchhhhChHHHHHHHHHHHHHHHHHHHHHHHh
Q 022970 207 ------------ATAFMSFFSVVIALFKDVPDLEGDKTFGIRTFTVRLGQKRVFWTCISLLEVAYTVAILVGAT 268 (289)
Q Consensus 207 ------------lt~f~~~f~~~i~i~KDi~DieGDr~~Gi~Tl~i~lG~k~a~~l~~~ll~~ay~~~i~~~~~ 268 (289)
...-..+.+.++...|+++|+|+|++.|.||+|+++|+|++.++-.+++..+|+..++....
T Consensus 157 vq~~~~~~~~ll~sl~~g~l~~~il~~Nn~~D~~~D~~~Gk~Tl~v~lG~~~a~~l~~~l~~~ay~~~~~~~~~ 230 (284)
T TIGR00751 157 LQAHRVDWVGILPAVATGLLACAVLNINNLRDIPTDARAGKNTLAVRLGDARTRMYHQGLLAVAGVCTFVFMLA 230 (284)
T ss_pred HhcCCCCHHHHHHHHHHHHHHHHHHHHcCcccchhHHHcCCEeehhhcchHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 11112344567889999999999999999999999999999999999999999887766554
No 37
>COG1575 MenA 1,4-dihydroxy-2-naphthoate octaprenyltransferase [Coenzyme metabolism]
Probab=99.78 E-value=1.1e-17 Score=158.20 Aligned_cols=181 Identities=23% Similarity=0.271 Sum_probs=120.1
Q ss_pred HHHHHHhhhccchhHHHHHHHHHHHHHhhcccCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhhhhh--ccc--------
Q 022970 87 ALDAFYRFSRPHTVIGTALSIVSVALLAVEKVSDISPLFFTGVLEAIAAALMMNIYIVGLNQLSDIE--IDK-------- 156 (289)
Q Consensus 87 ~l~a~~~l~RPht~igt~l~vl~g~llA~~~~~~~~~~~~~~~l~~lva~l~~n~~~ngiNDyfD~E--IDk-------- 156 (289)
+.+.|||..||||+..+..+++.|..+|......++ ++..+.++++++++++..|..|||+|.+ .|.
T Consensus 7 ~~~~wl~~~rP~Tl~aai~Pv~~G~a~A~~~~~~f~---~~~~ll~Li~~~~iq~~vN~~NdY~D~~KG~D~~g~~~~~~ 83 (303)
T COG1575 7 KTQLWLELARPKTLPAAIAPVIVGTALAFWYGKSFN---LLVALLALIAAILLQILVNLANDYFDYKKGTDTHGPDRLKQ 83 (303)
T ss_pred HHHHHHHhcCccchHHHHHHHHHHHHHHHHHccchH---HHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCCCCCccccc
Confidence 468999999999999999999999999965333344 4566778999999999999999999997 773
Q ss_pred ---ccchhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------h-cCCCC--cch-----------HH
Q 022970 157 ---LPLLRWKRFAVAAAMCILAVRAVVVQLAFYLHMQTHV---------------Y-RRPAV--FSK-----------PL 204 (289)
Q Consensus 157 ---lPplRlKr~p~laa~~Il~v~a~iv~lg~~l~~~t~~---------------~-g~p~~--~~~-----------~V 204 (289)
+-+-+.|+.-. ..+++. ..+..+.+|++++..+.+ + |+|.. ..+ ++
T Consensus 84 ~g~I~~~~~k~~~~-l~l~l~-~~~g~~llg~~~~~~s~~~~l~lG~l~~~~g~~YTgGp~PlgY~gLGEi~~~vffG~l 161 (303)
T COG1575 84 SGLIVRQSMKPALI-LSLALF-LLAGLALLGVILAALSDWLVLLLGLLCIAAGILYTGGPFPLGYMGLGEIFVGVFFGPL 161 (303)
T ss_pred cceeecccCCHHHH-HHHHHH-HHHHHHHHHHHHHHHhhhHHHHHHHHHHHheeeeccCCcCcccCCHHHHHHHHHHHHH
Confidence 33333333311 111111 122222223333322111 0 23332 111 11
Q ss_pred HHHHH-----------------HHHHHHHHHHHHhcCCChhhhHhcCCccchhhhChHHHHHHHHHHHHHHHHHHHHHHH
Q 022970 205 IFATA-----------------FMSFFSVVIALFKDVPDLEGDKTFGIRTFTVRLGQKRVFWTCISLLEVAYTVAILVGA 267 (289)
Q Consensus 205 ~~lt~-----------------f~~~f~~~i~i~KDi~DieGDr~~Gi~Tl~i~lG~k~a~~l~~~ll~~ay~~~i~~~~ 267 (289)
+++.. -..+.+..+...|+++|+|-|++.|.+|+|+++|++++..+-..++..+|+..++.-+
T Consensus 162 ~v~g~~yiqt~~~~~~~ll~slp~gil~~~Il~aNNirDie~D~~~gk~TLavrLG~~~~~~l~~~l~~~a~l~~~~~~i 241 (303)
T COG1575 162 IVLGAYYIQTGRLSWAILLPSLPVGILIANILLANNLRDIEEDIRNGKYTLAVRLGRKNARKLYAALLVVAYLAIVIFVI 241 (303)
T ss_pred HHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHhcccccchhHHhcCCcceeeeeccHhHHHHHHHHHHHHHHHHHHHHH
Confidence 11111 1112234577999999999999999999999999999999999999999999887655
Q ss_pred hCchh
Q 022970 268 TSPFA 272 (289)
Q Consensus 268 ~~~~~ 272 (289)
.....
T Consensus 242 ~~~~~ 246 (303)
T COG1575 242 LGLFP 246 (303)
T ss_pred HHhch
Confidence 44433
No 38
>PRK12871 ubiA prenyltransferase; Reviewed
Probab=99.77 E-value=1.7e-17 Score=156.53 Aligned_cols=172 Identities=19% Similarity=0.222 Sum_probs=104.7
Q ss_pred HHHHHHHhhhccchhHHHHHHHHHHHHHhhcccCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhccc---------
Q 022970 86 NALDAFYRFSRPHTVIGTALSIVSVALLAVEKVSDISPLFFTGVLEAIAAALMMNIYIVGLNQLSDIEIDK--------- 156 (289)
Q Consensus 86 ~~l~a~~~l~RPht~igt~l~vl~g~llA~~~~~~~~~~~~~~~l~~lva~l~~n~~~ngiNDyfD~EIDk--------- 156 (289)
.+++.|+|++||++......+++.|..+|......+++.. .++.++.++++++ .+|.+|||+|+|+|+
T Consensus 3 ~~~~~~~~l~Rp~~l~~~~~~~~~g~~lA~~~~g~~~~~~--~~l~~l~~~l~~~-ag~~iND~~D~~~D~~~v~rtm~r 79 (297)
T PRK12871 3 ETLKAYIDLTRAHFLPAWPLLFCSGLVLAFANYGGFSWEL--TIKAALIGLFGFE-AGFVLNDYVDRKRDRLDVENTLTR 79 (297)
T ss_pred chHHHHHHHHhHHHHHHHHHHHHHHHHHHHHccCCCCHHH--HHHHHHHHHHHHH-HHHHHhhHHHHhcCcchHhhhhhc
Confidence 4588999999999999888888889888732112334322 2223344445554 467999999999985
Q ss_pred ---------ccchhhhHhHHHHHHHHHHHHH-------------HHHHHHHHHHH----HHHHhcC----CCC---c---
Q 022970 157 ---------LPLLRWKRFAVAAAMCILAVRA-------------VVVQLAFYLHM----QTHVYRR----PAV---F--- 200 (289)
Q Consensus 157 ---------lPplRlKr~p~laa~~Il~v~a-------------~iv~lg~~l~~----~t~~~g~----p~~---~--- 200 (289)
+|+++++....+....++...+ ..+.++++.+. ++. +++ |.. +
T Consensus 80 ~~~P~~~Rpl~sG~is~~~a~~~~i~l~~i~~~l~~~l~~~~~~~~~~l~~~~~~~~~~Y~~-~kr~~~~p~~~l~G~~~ 158 (297)
T PRK12871 80 YWRPFKERPIPSGKLSSKNAFALFILLAAVTSALILTLPYPNSLYVFVIMLYSYGIEAFYQV-KKRNQKYPVAQLLGRTD 158 (297)
T ss_pred cccCCCCCccCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-ccccccccHHHHHHHHH
Confidence 3556665554332222111111 11122222221 111 232 211 1
Q ss_pred ---------------chHHHHHHHHHHHHHHHHHHHhcCCChhhhHhcCCccchhhhChHHHHHHHHHHHHHHHHH
Q 022970 201 ---------------SKPLIFATAFMSFFSVVIALFKDVPDLEGDKTFGIRTFTVRLGQKRVFWTCISLLEVAYTV 261 (289)
Q Consensus 201 ---------------~~~V~~lt~f~~~f~~~i~i~KDi~DieGDr~~Gi~Tl~i~lG~k~a~~l~~~ll~~ay~~ 261 (289)
+...+.+..+.++++.+++++||++|+|||++.|+||+|+++|++++.++...+..+..+.
T Consensus 159 ~~~~~~~g~~~~g~~~~~~~ll~~~~~~w~~~~~~~~a~~D~e~D~~~G~~Tlpv~~G~~~t~~~i~~~~~l~~l~ 234 (297)
T PRK12871 159 FTLFPAAGYLCYGQPDMTALLYMVFFYPWTMAHLGLNDFIDLENDRARGMKSIAVLYGMKGTMYWVTGFTALHFLA 234 (297)
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHcCCeeeeeeechHHHHHHHHHHHHHHHHH
Confidence 0111223345566788999999999999999999999999999999987655555554443
No 39
>PRK13592 ubiA prenyltransferase; Provisional
Probab=99.76 E-value=2.5e-17 Score=155.60 Aligned_cols=125 Identities=19% Similarity=0.199 Sum_probs=82.9
Q ss_pred HHHHHHHHhhhhhhhhhhccc-------ccchhhhHhHHHHHHHHHHHHHHHHH----------HHHHHHH----HHHHh
Q 022970 136 ALMMNIYIVGLNQLSDIEIDK-------LPLLRWKRFAVAAAMCILAVRAVVVQ----------LAFYLHM----QTHVY 194 (289)
Q Consensus 136 ~l~~n~~~ngiNDyfD~EIDk-------lPplRlKr~p~laa~~Il~v~a~iv~----------lg~~l~~----~t~~~ 194 (289)
.++..+.+|.+|||||+|||| +|++|.++..+......+.+.++.++ +..++|. .+..+
T Consensus 55 vf~~~~~gniiNDy~D~EIDrIN~P~RPLPsG~VS~~~A~~~si~L~~~~l~L~~l~~i~i~~~~i~~lY~~lm~a~~~K 134 (299)
T PRK13592 55 VFGFWMILRIADDFKDYETDRRLFPHRALPSGRVKKKDLAIALSFIVAVSVLLNVLFMNNVGWFLFLYIYGTLMSFWFFK 134 (299)
T ss_pred HHHHHHHhHHHHHHhhHHHhhhcCCCCCCCcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 334456888999999999999 99999988865443333222222211 1222330 12223
Q ss_pred cCCCCcchHH---------------------------------HHHHHHHHHHHHHHHHHhcCCChhhhHhcCCccchhh
Q 022970 195 RRPAVFSKPL---------------------------------IFATAFMSFFSVVIALFKDVPDLEGDKTFGIRTFTVR 241 (289)
Q Consensus 195 g~p~~~~~~V---------------------------------~~lt~f~~~f~~~i~i~KDi~DieGDr~~Gi~Tl~i~ 241 (289)
+.+...|..| +++....++.+++||+.||+|| |||++. .+|+|++
T Consensus 135 ~~~l~gNl~Va~ltg~~f~~g~~~~~~~fg~~~~g~~~~~~~~~~l~l~afl~~l~rEI~KdieD-~gd~~~-~~Tlpi~ 212 (299)
T PRK13592 135 RDKIQNSLPLALVTHNPVMMILNLYTISFVCYKYNLPLLSLPTVLLAFTMYFPSLIWEVCRKIRA-PKDETE-YVTYSKL 212 (299)
T ss_pred ccCCCcchhhhhhccchhhhchhhhhhhhhhhhcccchhhHHHHHHHHHHHHHHHHHHHHHhhcC-CccccC-Ceeechh
Confidence 3333322222 2333455566789999999999 899975 9999999
Q ss_pred hChHHHHHHHHHHHHHHHHHH
Q 022970 242 LGQKRVFWTCISLLEVAYTVA 262 (289)
Q Consensus 242 lG~k~a~~l~~~ll~~ay~~~ 262 (289)
+|+|++.+++..+..++.+..
T Consensus 213 ~G~kkA~~ia~~l~ii~v~~s 233 (299)
T PRK13592 213 FGYKKATRFIEVVTLLDILTN 233 (299)
T ss_pred ccchhHHHHHHHHHHHHHHHh
Confidence 999999999988877766543
No 40
>PRK13362 protoheme IX farnesyltransferase; Provisional
Probab=99.76 E-value=6.3e-17 Score=153.19 Aligned_cols=164 Identities=16% Similarity=0.225 Sum_probs=109.6
Q ss_pred hHHHHHHHHhhhccchhHHHHHHHHHHHHHhhcccCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhccc-------
Q 022970 84 VINALDAFYRFSRPHTVIGTALSIVSVALLAVEKVSDISPLFFTGVLEAIAAALMMNIYIVGLNQLSDIEIDK------- 156 (289)
Q Consensus 84 ~~~~l~a~~~l~RPht~igt~l~vl~g~llA~~~~~~~~~~~~~~~l~~lva~l~~n~~~ngiNDyfD~EIDk------- 156 (289)
.+.+++.|+|++||+++....++++.|+++|.+ .+.++.. ++.++++..++.+++|.+|||+|+|+|+
T Consensus 9 ~~~~l~~~~~L~RP~~~~~~~~~~~~G~~la~~--~~~~~~~---~~~~~lg~~l~~aaa~~~Nd~~D~~iD~~~~Rt~~ 83 (306)
T PRK13362 9 WEASLKDYIQVTKPGIIFGNVISVAGGFFLASK--GHVDPVL---MLAAVIGLSLVVASGCALNNCIDRDIDAKMQRTRN 83 (306)
T ss_pred HHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHcc--CCCCHHH---HHHHHHHHHHHHHHHHHHhChHHhCcCCCCCCCCC
Confidence 345689999999999999999999999998833 2334321 2334455556678999999999999997
Q ss_pred --ccchhhhHhHHHHHHHHHHHH-------------HHHHHHHH--HHHHHHHHhcCCCC--------------------
Q 022970 157 --LPLLRWKRFAVAAAMCILAVR-------------AVVVQLAF--YLHMQTHVYRRPAV-------------------- 199 (289)
Q Consensus 157 --lPplRlKr~p~laa~~Il~v~-------------a~iv~lg~--~l~~~t~~~g~p~~-------------------- 199 (289)
+|++|+++...+....++... +....++. |...++..+|+-..
T Consensus 84 RPlpsG~is~~~A~~~~~~l~~~g~~ll~~~~n~~~~~l~~~~~~~~~~~Yt~~lKr~t~~~~~vgg~~ga~p~l~G~~a 163 (306)
T PRK13362 84 RVTVTGEISLGEALGFGLALGVAGFGLLAAFTNPLAALFAAFGYVVYVGVYSLYLKRNSVYGTLVGSLSGAMPPVVGYCA 163 (306)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHHHhccCcHhHHHHHHHHHHHHHHHHHH
Confidence 899999777543322211111 11111222 22233422332111
Q ss_pred ----cchHHHHHHHHHHHHHHHHHHHhcCCChhhhHhcCCccchhhhChHHHHHHHH
Q 022970 200 ----FSKPLIFATAFMSFFSVVIALFKDVPDLEGDKTFGIRTFTVRLGQKRVFWTCI 252 (289)
Q Consensus 200 ----~~~~V~~lt~f~~~f~~~i~i~KDi~DieGDr~~Gi~Tl~i~lG~k~a~~l~~ 252 (289)
.+...+++..++++|+.......+++|.|+|++.|++|+|++.|+|++.+.+.
T Consensus 164 ~~g~~~~~~~~l~~~~~~W~~~h~~~~ai~~~~Dy~~aG~~~lpv~~G~~~t~~~~~ 220 (306)
T PRK13362 164 VTGQFDAGALILLLMFSLWQMPHSYAIAIFRFNDYAAAGIPVLPVARGIAKTKLHIV 220 (306)
T ss_pred HcCCCcHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHCCCeeeceecChHHHHHHHH
Confidence 11223334556667778888888999999999999999999999998887543
No 41
>TIGR01473 cyoE_ctaB protoheme IX farnesyltransferase. This model describes protoheme IX farnesyltransferase, also called heme O synthase, an enzyme that creates an intermediate in the biosynthesis of heme A. Prior to the description of its enzymatic function, this protein was often called a cytochrome o ubiquinol oxidase assembly factor.
Probab=99.75 E-value=8.6e-17 Score=149.26 Aligned_cols=175 Identities=14% Similarity=0.107 Sum_probs=104.9
Q ss_pred HHHHhhhccchhHHHHHHHHHHHHHhhcccCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhccc---------ccc
Q 022970 89 DAFYRFSRPHTVIGTALSIVSVALLAVEKVSDISPLFFTGVLEAIAAALMMNIYIVGLNQLSDIEIDK---------LPL 159 (289)
Q Consensus 89 ~a~~~l~RPht~igt~l~vl~g~llA~~~~~~~~~~~~~~~l~~lva~l~~n~~~ngiNDyfD~EIDk---------lPp 159 (289)
|+|+|++||++++.+.++++.|+++|.+.. +.++. .++.++++++++.+++|.+|||+|+|+|+ +|+
T Consensus 1 ~~~~~l~rp~~~~~~~~~~~~g~~la~~~~-~~~~~---~~~l~~~~~~l~~~a~~~~Nd~~D~~iD~~~~Rt~~Rpl~s 76 (280)
T TIGR01473 1 KDYLQLTKPRIISLLLITAFAGMWLAPGGA-LVNPP---LLLLTLLGTTLAAASANAFNMYIDRDIDKKMKRTRNRPLVT 76 (280)
T ss_pred CchHHHccHHHHHHHHHHHHHHHHHhCCCC-CCCHH---HHHHHHHHHHHHHHHHHHHHhhcccCcCCCCCCCCCCCCCC
Confidence 368999999999999999999999984421 23322 23445677778899999999999999999 888
Q ss_pred hhhhHhHHHHHHHHHHHHH-------------HHHHHHH--HHHHHHHHhcCCCCcchH---------------------
Q 022970 160 LRWKRFAVAAAMCILAVRA-------------VVVQLAF--YLHMQTHVYRRPAVFSKP--------------------- 203 (289)
Q Consensus 160 lRlKr~p~laa~~Il~v~a-------------~iv~lg~--~l~~~t~~~g~p~~~~~~--------------------- 203 (289)
+|++.........++...+ .+..++. +.+.++...|+-..++..
T Consensus 77 G~is~~~a~~~~~~~~~~g~~il~~~~~~~~~~l~~~~~~~~~~~Yt~~lKr~~~~~~~v~~~~g~~~~l~g~~a~~g~~ 156 (280)
T TIGR01473 77 GRISPREALAFGLLLGVLGVAILAAFVNPLAALLGLFGIFFYVIVYTIWLKRRTPQNTVIGGFAGAVPPLIGWAAVTGSI 156 (280)
T ss_pred CCcCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhcChhhccCCchhHHHHHHHHHHHHHHHHHHhcCCC
Confidence 8887664332221111111 1111122 122233122321111111
Q ss_pred ---HHHHHHHHHHHHHHHHHHhcCCChhhhHhcCCccchhhhChHHHHHHHHHHHHHHHHHHHHHHH
Q 022970 204 ---LIFATAFMSFFSVVIALFKDVPDLEGDKTFGIRTFTVRLGQKRVFWTCISLLEVAYTVAILVGA 267 (289)
Q Consensus 204 ---V~~lt~f~~~f~~~i~i~KDi~DieGDr~~Gi~Tl~i~lG~k~a~~l~~~ll~~ay~~~i~~~~ 267 (289)
.+++....+++...-...-..+|.|.||+.|++|+|+++|+|++.+++............+.+.
T Consensus 157 ~~~~~~l~~~~~~w~~~~~~~~a~~~~~dd~~~G~~tl~v~~G~~~a~~~~~~~~~~~~~~~~~~~~ 223 (280)
T TIGR01473 157 SLGAWLLFAIIFLWQPPHFWALALKYKDDYRAAGIPMLPVVKGERITKRQIALYTAALLPVSLLLAF 223 (280)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHCCCccCCcccCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1111112222222222233468999999999999999999999988766555444444444443
No 42
>TIGR01474 ubiA_proteo 4-hydroxybenzoate polyprenyl transferase, proteobacterial. A fairly deep split by both clustering (UPGMA) and phylogenetics (NJ tree) separates this group (mostly Proteobacterial and mitochondrial), with several characterized members, from another group (mostly archaeal and Gram-positive bacterial) lacking characterized members.
Probab=99.74 E-value=2.2e-16 Score=147.24 Aligned_cols=168 Identities=13% Similarity=0.073 Sum_probs=99.0
Q ss_pred HHHHhhhccchh---HHHHHHHHHHHHHhhcccCCC-ChHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhccc--------
Q 022970 89 DAFYRFSRPHTV---IGTALSIVSVALLAVEKVSDI-SPLFFTGVLEAIAAALMMNIYIVGLNQLSDIEIDK-------- 156 (289)
Q Consensus 89 ~a~~~l~RPht~---igt~l~vl~g~llA~~~~~~~-~~~~~~~~l~~lva~l~~n~~~ngiNDyfD~EIDk-------- 156 (289)
+.|.|++|++.. ....++.+.|+.+|... ... ++. .++..+++..++.+++|.+|||+|+|+|+
T Consensus 2 ~~y~~l~R~~kp~~~~l~~~~~~~g~~la~~~-~~~~~~~---~~~~~~~~~~l~~~a~~~~Nd~~D~~iD~~~~Rt~~R 77 (281)
T TIGR01474 2 LPYAKLMRADKPIGTLLLLWPCLWSLLLAAQA-GGIPPLY---LLGLFTVGAILMRGAGCVINDIWDRDFDPQVERTKSR 77 (281)
T ss_pred hHHHHHHccccHHHHHHHHHHHHHHHHHHhcc-cCCCcHH---HHHHHHHHHHHHHHHHHHHHhHhhhcccccCCcccCC
Confidence 345666655554 45566777777777431 112 221 12334556667788999999999999997
Q ss_pred -ccchhhhHhHHHHHHHHHHHHHHHH------------HHHHH-HHHHHHHhcCCCC-----------------------
Q 022970 157 -LPLLRWKRFAVAAAMCILAVRAVVV------------QLAFY-LHMQTHVYRRPAV----------------------- 199 (289)
Q Consensus 157 -lPplRlKr~p~laa~~Il~v~a~iv------------~lg~~-l~~~t~~~g~p~~----------------------- 199 (289)
+|++|++....+....++...+++. ..+.+ ...++. .|+-..
T Consensus 78 Pl~sG~is~~~a~~~~~~~~~~~~~l~~~l~~~~~~l~~~~~~~~~~Y~~-~Kr~~~~~~~~~g~~~~~~~~~g~~a~~g 156 (281)
T TIGR01474 78 PLASGAVSVRQAILFLLVQLLVALGVLLQLNPLTILLGVASLALVATYPF-MKRITYWPQLVLGLAFGWGALMGWAAVTG 156 (281)
T ss_pred CCCCCCcCHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhch-hcccccccHHHHHHHHHHHHHHHHHHHcC
Confidence 8899997665433222221111111 00110 111122 222111
Q ss_pred -cchHHHHHHHHHHHHHHHHHHHhcCCChhhhHhcCCccchhhhChHHHHHHHHHHHHHHHHH
Q 022970 200 -FSKPLIFATAFMSFFSVVIALFKDVPDLEGDKTFGIRTFTVRLGQKRVFWTCISLLEVAYTV 261 (289)
Q Consensus 200 -~~~~V~~lt~f~~~f~~~i~i~KDi~DieGDr~~Gi~Tl~i~lG~k~a~~l~~~ll~~ay~~ 261 (289)
.+...+.+....++++.+.+++++++|+|+||+.|+||+|+++|++++.+.........++.
T Consensus 157 ~~~~~~~ll~~~~~lw~~~~~~~~a~~D~e~D~~~G~~tlpv~~G~~~~~~~~~~~~~~~~~~ 219 (281)
T TIGR01474 157 DLSTAAWVLYLANILWTLGYDTIYAMQDKEDDIKIGVKSTALRFGDNTKPWLGGLYALMILLL 219 (281)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHcCCCcccHHhhhhhHHHHHHHHHHHHHHH
Confidence 11222233445566788999999999999999999999999999998765544444434433
No 43
>PRK13591 ubiA prenyltransferase; Provisional
Probab=99.74 E-value=8.5e-17 Score=152.70 Aligned_cols=63 Identities=21% Similarity=0.259 Sum_probs=54.5
Q ss_pred HHHHHHhcCCChhhhHhcCCccchhhhChHHHHHHHHHHHHHHHHHHHHHHHhCchhhHHHHH
Q 022970 216 VVIALFKDVPDLEGDKTFGIRTFTVRLGQKRVFWTCISLLEVAYTVAILVGATSPFAWSKLIT 278 (289)
Q Consensus 216 ~~i~i~KDi~DieGDr~~Gi~Tl~i~lG~k~a~~l~~~ll~~ay~~~i~~~~~~~~~~~~~~~ 278 (289)
++++++||++|+||||+.|++|+|+++|++++.++..++..++|++.++..+..--.+...+.
T Consensus 193 ~~~~iindirDiEGDr~~G~kTLPV~lG~~~A~~l~~~l~~~~~l~li~~~~~g~l~~~~~~~ 255 (307)
T PRK13591 193 FINSCVYDFKDVKGDTLAGIKTLPVSLGEQKTRNLLLGIHLFSHLVLGIALIFGVIAFEPIIL 255 (307)
T ss_pred HHHHHHHHhhhhHhHHHcCCeeEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhh
Confidence 688899999999999999999999999999999999999999999988777765444444333
No 44
>PRK12873 ubiA prenyltransferase; Reviewed
Probab=99.69 E-value=3.1e-15 Score=141.38 Aligned_cols=179 Identities=15% Similarity=0.070 Sum_probs=110.7
Q ss_pred HHHHHHHhhhccchhHHHHHH---HHHHHHHhhcccCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhccc------
Q 022970 86 NALDAFYRFSRPHTVIGTALS---IVSVALLAVEKVSDISPLFFTGVLEAIAAALMMNIYIVGLNQLSDIEIDK------ 156 (289)
Q Consensus 86 ~~l~a~~~l~RPht~igt~l~---vl~g~llA~~~~~~~~~~~~~~~l~~lva~l~~n~~~ngiNDyfD~EIDk------ 156 (289)
++++.|+|++||+.+.++.+- .+.|.+++... ..+. ..++..++...++.++++.+||+.|+|+|+
T Consensus 5 ~~~~~y~~L~R~~Kp~~~~ll~~p~~~g~~la~~~--~~~~---~~~~~~~~g~~l~~~a~~~~Nd~~D~~iD~~~~RT~ 79 (294)
T PRK12873 5 IKLSPWFELLRWNKPTGRLILLIPAGWSLWLTPSA--PPSL---LLLLLIILGGLAVSGAGCIANDLWDRRIDRKVERTK 79 (294)
T ss_pred HhHHHHHHHhCccccchHHHHHHHHHHHHHHccCC--CCCH---HHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCcCC
Confidence 358899999999998887654 44455554221 1222 123345566667778999999999999998
Q ss_pred ---ccchhhhHhHHHHHHHHHHHHHHHHH----------------H-HHHHHHHHHHh----------cCCCC-------
Q 022970 157 ---LPLLRWKRFAVAAAMCILAVRAVVVQ----------------L-AFYLHMQTHVY----------RRPAV------- 199 (289)
Q Consensus 157 ---lPplRlKr~p~laa~~Il~v~a~iv~----------------l-g~~l~~~t~~~----------g~p~~------- 199 (289)
+|++|++....+....++.+.++... + .++...++..+ |-+..
T Consensus 80 ~RPl~sG~is~~~A~~~~~~~~~~~~~~~~~l~~~~n~l~~~l~~~~~~~~~~Y~~~KR~t~~~~~vlg~~~a~~~l~gw 159 (294)
T PRK12873 80 NRPLARGKISLKTAYSLLIVLLLLSLFVVLSLPQPSRNLCLSLAFLALPPILIYPSAKRWFAYPQAILALCWGFAVLIPW 159 (294)
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHhHHHHHH
Confidence 88999977754433322211111110 0 01111112111 00001
Q ss_pred ------cc--hHHHHHHHHHHHHHHHHHHHhcCCChhhhHhcCCccchhhhChHHHHHHHHHHHHHHHHHHHHHHHhCc
Q 022970 200 ------FS--KPLIFATAFMSFFSVVIALFKDVPDLEGDKTFGIRTFTVRLGQKRVFWTCISLLEVAYTVAILVGATSP 270 (289)
Q Consensus 200 ------~~--~~V~~lt~f~~~f~~~i~i~KDi~DieGDr~~Gi~Tl~i~lG~k~a~~l~~~ll~~ay~~~i~~~~~~~ 270 (289)
.+ ...+++....++|+.+.+++.+++|.|+|++.|++|+|+++|+ ++..++..+..+..+...++|....
T Consensus 160 ~Av~g~~~~~~~~l~l~~~~~~W~~~~d~iyA~qD~edD~~~Gv~slpv~~G~-~~~~~~~~~~~~~~~ll~~~g~~~~ 237 (294)
T PRK12873 160 AAAEGSLNGGWPLLFCWLATLLWTFGFDTVYAMADRRDDAKIGLNSSALSLGS-NALKTVQICYFLTSIFLALAAFIAQ 237 (294)
T ss_pred HHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHcCCcccchhcCh-hhHHHHHHHHHHHHHHHHHHHHHhC
Confidence 11 1222233566778899999999999999999999999999997 5666666666666665666666543
No 45
>PRK12876 ubiA prenyltransferase; Reviewed
Probab=99.69 E-value=5e-15 Score=140.33 Aligned_cols=182 Identities=15% Similarity=0.100 Sum_probs=105.7
Q ss_pred HHHHHHHhhhcc-chhHHHHHHHHHHHHHhhc---ccCC-CChHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhccc----
Q 022970 86 NALDAFYRFSRP-HTVIGTALSIVSVALLAVE---KVSD-ISPLFFTGVLEAIAAALMMNIYIVGLNQLSDIEIDK---- 156 (289)
Q Consensus 86 ~~l~a~~~l~RP-ht~igt~l~vl~g~llA~~---~~~~-~~~~~~~~~l~~lva~l~~n~~~ngiNDyfD~EIDk---- 156 (289)
++++.|.|+.|- ||+.. .=-+.+|.++|.. .... ++..-+..++...++.+++-.+++++|||+|+|||+
T Consensus 2 ~~~~~~~~~i~~~ht~Fa-lpfa~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~a~~~~Rsag~~~Nd~~DrdiD~~~~R 80 (300)
T PRK12876 2 MRIKYFQQLINCKYALFS-ALFLSASTVFALSLPEISFSLFSLGGIKTISLGGSAFFCARTVGIIVNQIIDCAIDKKNPR 80 (300)
T ss_pred chHHHHHHHHHHHHHHHH-HHHHHHHHHHHhccccccCCCcCCCCHHHHHHHHHHHHHHHHHHHHHHhHHHhcccCCCCC
Confidence 357888888886 55552 2234556667731 1111 111111122344566667788999999999999999
Q ss_pred -----ccchhhhHhHHHHHHHHHHHHH----H--------HHHHHHHH-HHHHHHhcCCCCcc-----------------
Q 022970 157 -----LPLLRWKRFAVAAAMCILAVRA----V--------VVQLAFYL-HMQTHVYRRPAVFS----------------- 201 (289)
Q Consensus 157 -----lPplRlKr~p~laa~~Il~v~a----~--------iv~lg~~l-~~~t~~~g~p~~~~----------------- 201 (289)
+|.+|++....+....+....+ . ...+++.+ ..++. .||-..++
T Consensus 81 T~~RPLpsG~is~~~A~~~~~~~~~~~~~l~~~ln~l~~~l~~~~~~~~~iY~~-~KR~t~~~~~vLGl~~~~~~l~~~~ 159 (300)
T PRK12876 81 TSSRVLPAKLLSINFSMLLLTLCSFLFLSLCWLLNPLCFSLAVLSTLLMIIYPY-TKRVTFLCHWILGLVYYLAILMNFF 159 (300)
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHh-HhcCCchhHHHHHHHHHHHHHHHHH
Confidence 8899997775333222111110 0 00111111 11222 22211110
Q ss_pred --------h----HHHHHHHHHHHHHHHHHHHhcCCChhhhHhcCCccchhhhChHHHHHHHHHHHHHHHHHHHHHHHhC
Q 022970 202 --------K----PLIFATAFMSFFSVVIALFKDVPDLEGDKTFGIRTFTVRLGQKRVFWTCISLLEVAYTVAILVGATS 269 (289)
Q Consensus 202 --------~----~V~~lt~f~~~f~~~i~i~KDi~DieGDr~~Gi~Tl~i~lG~k~a~~l~~~ll~~ay~~~i~~~~~~ 269 (289)
. ..++.+...+++..+.+++++.+|+|+||+.|++|+|+++|++++.+++..+..++-+..+++|...
T Consensus 160 Av~~~~~~~~l~~~~~lw~~~~~~~~~g~DiiYa~qD~e~D~~~Gl~Slpv~fG~~~a~~ia~~~~~l~~~~l~~~g~~~ 239 (300)
T PRK12876 160 AIIETPLSFSLFCMASLWGISFGMIIAANDIIYAIQDLEFDRKEGLFSIPARFGEKKAIRIASANLIASAIAYLLIGYFV 239 (300)
T ss_pred HHhcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHhhHHHcCCccchHHHCchhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 0 0011122333445589999999999999999999999999999988887766666666555555544
No 46
>PF01040 UbiA: UbiA prenyltransferase family; InterPro: IPR000537 The UbiA family of prenyltransferases includes bacterial 4-hydroxybenzoate octaprenyltransferase (gene ubiA); yeast mitochondrial para-hydroxybenzoate--polyprenyltransferase (gene COQ2); and protohaem IX farnesyltransferase (haem O synthase) from yeast and mammals(gene COX10), and from bacteria (genes cyoE or ctaB) [, ]. These are integral membrane proteins, which probably contain seven transmembrane segments. The signature is also found in cytochrome C oxidase assembly factor. The complexity of cytochrome C oxidase requires assistance in building the complex, and this is carried out by the cytochrome C oxidase assembly factor.; GO: 0004659 prenyltransferase activity, 0016021 integral to membrane
Probab=99.60 E-value=3e-14 Score=127.32 Aligned_cols=44 Identities=34% Similarity=0.649 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHHHHHhcCCChhhhHhcCCccchhhhChHHHHH
Q 022970 206 FATAFMSFFSVVIALFKDVPDLEGDKTFGIRTFTVRLGQKRVFW 249 (289)
Q Consensus 206 ~lt~f~~~f~~~i~i~KDi~DieGDr~~Gi~Tl~i~lG~k~a~~ 249 (289)
....+.+++...+...+|++|+|||++.|++|+|+++|++++..
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~D~~~D~~~g~~Tl~v~~G~~~~~~ 193 (257)
T PF01040_consen 150 LLAIFFFLLIFAIMFFNDIRDIEGDRKAGRRTLPVLLGEKKARY 193 (257)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHcCCcchHHHHHHHHHHH
Confidence 33444466777888888999999999999999999999999998
No 47
>PRK08238 hypothetical protein; Validated
Probab=99.28 E-value=1.5e-10 Score=116.06 Aligned_cols=178 Identities=20% Similarity=0.135 Sum_probs=102.2
Q ss_pred hhcccceeeecccCCCCCCCCCCCCCCCCCchhhHHHHHHHHhhhccchhHHHHHHHHHHHHHhhcccCCCChHHHHHHH
Q 022970 51 QKIKIKHLANAASGHPLQSNQPDDYKPKSPLNSVINALDAFYRFSRPHTVIGTALSIVSVALLAVEKVSDISPLFFTGVL 130 (289)
Q Consensus 51 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~a~~~l~RPht~igt~l~vl~g~llA~~~~~~~~~~~~~~~l 130 (289)
+..++.++||..++-.... .+...|...+++.+..+++|+|++|||.|++..+.++ +++.+.. ..+ +..+..++
T Consensus 156 ~~A~~av~Vn~~~~l~~~a--~~~~~~~~~~~~~~~~~~~~~~l~Rp~q~~kn~l~~~-p~l~a~~-~~~--~~~~~~~~ 229 (479)
T PRK08238 156 AAARRAIVVGASPGVARAA--RALGPVERVFPPRPARLRTWLKALRVHQWAKNLLVFV-PLLAAHQ-FGD--LQALLAAL 229 (479)
T ss_pred HhCCCeEEECCCHHHHHHH--HHcCCcceecCCCchHHHHHHHHhCCcHHHHHHHHHH-HHHHhcc-cCC--hHHHHHHH
Confidence 4555666676544311000 1111234455677788999999999999999998754 7776632 112 22222233
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhhccc---------ccchhhhHhHHHHHHHHHHHHHHH-----------HHHHHHH--H
Q 022970 131 EAIAAALMMNIYIVGLNQLSDIEIDK---------LPLLRWKRFAVAAAMCILAVRAVV-----------VQLAFYL--H 188 (289)
Q Consensus 131 ~~lva~l~~n~~~ngiNDyfD~EIDk---------lPplRlKr~p~laa~~Il~v~a~i-----------v~lg~~l--~ 188 (289)
.++++..++..+++.+|||+|+|+|| +|++|++....+....++...+++ +.++.+. .
T Consensus 230 ~~f~~~~l~~sa~~~~ND~~D~e~Dr~~~rk~~RPlasG~is~~~A~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~~~~~ 309 (479)
T PRK08238 230 LAFLAFSLCASAVYILNDLLDLEADRAHPRKRRRPFASGALPIPFGLAAAPLLLLAGLALALALGPAFLLVLLAYLALTL 309 (479)
T ss_pred HHHHHHHHHHHHHHHHHhhHHhhhhccCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 34444445678889999999999999 888998666443322222221111 1111111 1
Q ss_pred HHHHHhcCCCCc----------------------chHHHHHHHHHHHHHHHHHHHhcCCChhhhHhcCC
Q 022970 189 MQTHVYRRPAVF----------------------SKPLIFATAFMSFFSVVIALFKDVPDLEGDKTFGI 235 (289)
Q Consensus 189 ~~t~~~g~p~~~----------------------~~~V~~lt~f~~~f~~~i~i~KDi~DieGDr~~Gi 235 (289)
.++..+|+-..+ +.+-| +..+..++.+..++.|...|++++++.|-
T Consensus 310 ~Ys~~lKr~~~~~~~~la~~~~lr~~~G~~a~~~~~s~w-ll~~~~~~~l~la~~KR~~El~~~~~~~~ 377 (479)
T PRK08238 310 AYSLRLKRKVLVDVLTLAALYTLRIIAGAAAIGVALSFW-LLAFSMFFFLSLALVKRYTELRRALQRGK 377 (479)
T ss_pred HhhHHhcCCccccchHHHHHHHHHHHHHHHHhccCHHHH-HHHHHHHHHHHHHHHHhHHHHHHHHhcCC
Confidence 223323331111 11112 22345556778999999999999998885
No 48
>PLN02776 prenyltransferase
Probab=99.12 E-value=7.5e-09 Score=100.05 Aligned_cols=70 Identities=16% Similarity=0.057 Sum_probs=51.6
Q ss_pred hhccchhHHHHHHHHHHHHHhhcccCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhccc---------ccchhhhH
Q 022970 94 FSRPHTVIGTALSIVSVALLAVEKVSDISPLFFTGVLEAIAAALMMNIYIVGLNQLSDIEIDK---------LPLLRWKR 164 (289)
Q Consensus 94 l~RPht~igt~l~vl~g~llA~~~~~~~~~~~~~~~l~~lva~l~~n~~~ngiNDyfD~EIDk---------lPplRlKr 164 (289)
+++|.-.....++++.|+++|.+... ++. .++..+++..++.+++|++||++|+|||+ +|.+|+++
T Consensus 1 L~Kpri~~lv~~ta~~G~~lA~~~~~--~~~---~l~~~~lg~~l~~aaa~~~N~i~DrdiD~~m~RT~~RPLpsGris~ 75 (341)
T PLN02776 1 LSKARLSALVVATSGAGFVLGSGEAI--DLP---GLGWTCAGTMLCAASANTLNQVFEVKNDSKMKRTMRRPLPSGRISV 75 (341)
T ss_pred CCcchhHHHHHHHHHHHHHHhcCCCC--CHH---HHHHHHHHHHHHHHHHHHHHhHHhhhhcccCCCCCCCCCCCCCCCH
Confidence 35777778888899999999854222 221 22344566667788999999999999997 99999977
Q ss_pred hHHH
Q 022970 165 FAVA 168 (289)
Q Consensus 165 ~p~l 168 (289)
...+
T Consensus 76 ~~A~ 79 (341)
T PLN02776 76 PHAV 79 (341)
T ss_pred HHHH
Confidence 7543
No 49
>PRK12324 phosphoribose diphosphate:decaprenyl-phosphate phosphoribosyltransferase; Provisional
Probab=99.09 E-value=1.4e-09 Score=103.17 Aligned_cols=81 Identities=16% Similarity=0.170 Sum_probs=53.7
Q ss_pred hhHHHHHHHHhhhccchhHHHHHHHHHHHHHhhcccCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhccc------
Q 022970 83 SVINALDAFYRFSRPHTVIGTALSIVSVALLAVEKVSDISPLFFTGVLEAIAAALMMNIYIVGLNQLSDIEIDK------ 156 (289)
Q Consensus 83 ~~~~~l~a~~~l~RPht~igt~l~vl~g~llA~~~~~~~~~~~~~~~l~~lva~l~~n~~~ngiNDyfD~EIDk------ 156 (289)
+.++++++|+|++|||.|++..+.+. +.+.+.. ..+.. .+...+.++++..++..+++.+||++|+|+||
T Consensus 6 ~~~~~l~~~l~L~RP~~w~~nll~~~-~~~~a~~-~~~~~--~~~~~llafl~~~l~~sa~y~iND~~D~e~Dr~~prk~ 81 (295)
T PRK12324 6 PPKNLLAGYLKLLRPKQWIKNLFVFA-APIFAGN-LLNPG--ALLKVLLAFVLFCLASSAVYLVNDIRDVEADRLHPTKR 81 (295)
T ss_pred ChHHHHHHHHHHhCchHHHHHHHHHH-HHHHHHh-hcccc--hHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhccCCCCC
Confidence 34568999999999999999887544 3344422 11111 12122333334344567888999999999999
Q ss_pred ---ccchhhhHhHH
Q 022970 157 ---LPLLRWKRFAV 167 (289)
Q Consensus 157 ---lPplRlKr~p~ 167 (289)
+|++|++....
T Consensus 82 ~RPlasG~is~~~A 95 (295)
T PRK12324 82 NRPIASGVVSVSLA 95 (295)
T ss_pred CCCCCCCccCHHHH
Confidence 78888866643
No 50
>COG0109 CyoE Polyprenyltransferase (cytochrome oxidase assembly factor) [Posttranslational modification, protein turnover, chaperones]
Probab=98.96 E-value=4.4e-08 Score=93.26 Aligned_cols=157 Identities=18% Similarity=0.191 Sum_probs=101.7
Q ss_pred hHHHHHHHHhhhccchhHHHHHHHHHHHHHhhcccCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhccc-------
Q 022970 84 VINALDAFYRFSRPHTVIGTALSIVSVALLAVEKVSDISPLFFTGVLEAIAAALMMNIYIVGLNQLSDIEIDK------- 156 (289)
Q Consensus 84 ~~~~l~a~~~l~RPht~igt~l~vl~g~llA~~~~~~~~~~~~~~~l~~lva~l~~n~~~ngiNDyfD~EIDk------- 156 (289)
-...+++|+++.+|.-+..-.+.++.|+++|.. ...++. .++.+++..-+..+..+++|.|+|+|||+
T Consensus 14 ~~~~~k~yl~LtKPrvi~L~~it~~~g~~lA~~--~~~~~~---l~~~~~~g~~L~a~~a~a~N~~~DrDID~~M~RT~~ 88 (304)
T COG0109 14 SRSTIKDYLQLTKPRVISLLLITAFAGMLLAPR--GSINPL---LLLLTLLGGALGAGGAGAFNMYIDRDIDALMERTRK 88 (304)
T ss_pred hHHHHHHHHHHhCCeeeehHHHHHHHHHHHccc--ccccHH---HHHHHHHHHHHHHHHHHHHhhhhhhhHHHhhhhccC
Confidence 456899999999999999999999999999964 123322 22334444445567888999999999999
Q ss_pred --ccchhhhHhHHHHHHHHHHHHH-------------HHHHHHHHHH--HHHHHhcCCCC-----------c--------
Q 022970 157 --LPLLRWKRFAVAAAMCILAVRA-------------VVVQLAFYLH--MQTHVYRRPAV-----------F-------- 200 (289)
Q Consensus 157 --lPplRlKr~p~laa~~Il~v~a-------------~iv~lg~~l~--~~t~~~g~p~~-----------~-------- 200 (289)
+|.++++....+.....+.+.+ .....|++.| .+|.++||... .
T Consensus 89 RP~~~G~i~p~~al~fgl~L~~~g~~~l~~~vn~laa~l~~~gi~~Yv~vYT~~lKR~T~~NiviGg~aGa~PpliGwaA 168 (304)
T COG0109 89 RPLVTGLISPREALAFGLVLGVAGFSLLWFLVNLLAAVLGLFGIFFYVVVYTLWLKRRTPQNIVIGGFAGAMPPLIGWAA 168 (304)
T ss_pred CCCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccCCcccceeeeeccccccccceeee
Confidence 8899998886665554443332 2223344443 24554544111 1
Q ss_pred -----chHHHHHHHHHHHH------HHHHHHHhcCCChhhhHhcCCccchhhhChHHHHHHH
Q 022970 201 -----SKPLIFATAFMSFF------SVVIALFKDVPDLEGDKTFGIRTFTVRLGQKRVFWTC 251 (289)
Q Consensus 201 -----~~~V~~lt~f~~~f------~~~i~i~KDi~DieGDr~~Gi~Tl~i~lG~k~a~~l~ 251 (289)
+..-+.+.+.+++| ++++..-+| =++.|+--+|+.-|++.+.+-.
T Consensus 169 vtg~~~~~a~~Lf~IiF~WtPpHfwALAl~~~~D------Y~~AgiPMlPvv~G~~~t~~~I 224 (304)
T COG0109 169 VTGSISLGAILLFAIIFLWTPPHFWALALKYKDD------YKAAGIPMLPVVKGERRTKRQI 224 (304)
T ss_pred eeCCCCchHHHHHHHHHHhccHHHHHHHHHHHHH------HHHcCCCcccccccHHHHHHHH
Confidence 11123344455554 344444333 2578999999999999887643
No 51
>KOG1381 consensus Para-hydroxybenzoate-polyprenyl transferase [Coenzyme transport and metabolism]
Probab=98.23 E-value=7.8e-06 Score=77.42 Aligned_cols=188 Identities=15% Similarity=0.138 Sum_probs=101.3
Q ss_pred hHHHHHHHHhhhccchhHHHHHHH-HHHHHHhhcccCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhccc------
Q 022970 84 VINALDAFYRFSRPHTVIGTALSI-VSVALLAVEKVSDISPLFFTGVLEAIAAALMMNIYIVGLNQLSDIEIDK------ 156 (289)
Q Consensus 84 ~~~~l~a~~~l~RPht~igt~l~v-l~g~llA~~~~~~~~~~~~~~~l~~lva~l~~n~~~ngiNDyfD~EIDk------ 156 (289)
-+.+++.|-|++|-..-+||=+-. -|..-++........+.+-.. ..+=+.+++|-++++.|||+.|.|+|+
T Consensus 60 ~p~r~~pYaqLmRldkPiGTwLLywPCtWSIamaAdag~~p~~~mL-~LFG~GAllMRgAGCtINDlwDkdlD~KVeRtk 138 (353)
T KOG1381|consen 60 SPKRWKPYAQLMRLDKPIGTWLLYWPCTWSIAMAADAGLLPSIKML-ALFGVGALLMRGAGCTINDLWDKDLDAKVERTK 138 (353)
T ss_pred CCccchhHHHHHhcCCCceeeeeecchHHHHHhccCCCccchhHHH-HHhcccHHHhccCCceehhhhhhhhhhhHhhhc
Confidence 334589999999999998884321 122222222122222322222 122345577889999999999999999
Q ss_pred ---ccchhhhHhHHHHHHHHHHH--HHHHHHHHHHHHH---------------------HHHHhcCCCC-----------
Q 022970 157 ---LPLLRWKRFAVAAAMCILAV--RAVVVQLAFYLHM---------------------QTHVYRRPAV----------- 199 (289)
Q Consensus 157 ---lPplRlKr~p~laa~~Il~v--~a~iv~lg~~l~~---------------------~t~~~g~p~~----------- 199 (289)
+-++++..+..+..+..-.. .++.+++-.|... -..++|..+.
T Consensus 139 lRPlAsG~ls~~qaI~fL~~ql~~gLgiLlqLn~ysi~lg~~sl~~v~~ypl~kr~TY~pq~vLgltfnwGAllGw~A~~ 218 (353)
T KOG1381|consen 139 LRPLASGSLSPRQAIGFLGAQLSLGLGILLQLNWYSIALGASSLALVITYPLMKRFTYWPQLVLGLTFNWGALLGWCALK 218 (353)
T ss_pred ccccccCCcchhHHHHHHHHHHHHhHHHHHhccHHHHHhcccccccEEEeehhhhcchhHHHHHhhhcchhhhhcchhhc
Confidence 55677766644333322111 1222222111000 0011111000
Q ss_pred --cchHHHH-HHHHHHHHHHHHHHHhcCCChhhhHhcCCccchhhhChHHHHHHHHHHHHHHHHHHHHHHHhCchhh
Q 022970 200 --FSKPLIF-ATAFMSFFSVVIALFKDVPDLEGDKTFGIRTFTVRLGQKRVFWTCISLLEVAYTVAILVGATSPFAW 273 (289)
Q Consensus 200 --~~~~V~~-lt~f~~~f~~~i~i~KDi~DieGDr~~Gi~Tl~i~lG~k~a~~l~~~ll~~ay~~~i~~~~~~~~~~ 273 (289)
..+++.+ +-..-..|++.-..+-..+|-+-|-+-|+++.+.++|++.=.|++ .+-..-.....+.|+.+...|
T Consensus 219 g~~~~s~~~plYls~v~Wtl~YDTIYAHQDK~dDvk~gvkSTALrfG~nTK~wl~-gf~a~~ia~La~aG~~s~q~~ 294 (353)
T KOG1381|consen 219 GSLSPSAVLPLYLSGVCWTLIYDTIYAHQDKRDDVKIGVKSTALRFGDNTKPWLS-GFGAAQIASLAAAGIASDQTW 294 (353)
T ss_pred CccChhhhhHHHHhhhhhhhhhhhhhhcccchhhhHhcchhhhhhcCCCCchHHh-hhhHHHHHHHHHhhhccCCCc
Confidence 0111111 111122356666677778999999999999999999988766665 333333333445666666666
No 52
>KOG4581 consensus Predicted membrane protein [Function unknown]
Probab=97.89 E-value=0.00011 Score=68.65 Aligned_cols=182 Identities=19% Similarity=0.158 Sum_probs=105.2
Q ss_pred HHHHHHHHhhhccchhHHHHHHHHHHHHHhhcc--cCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhhhhh--ccc----
Q 022970 85 INALDAFYRFSRPHTVIGTALSIVSVALLAVEK--VSDISPLFFTGVLEAIAAALMMNIYIVGLNQLSDIE--IDK---- 156 (289)
Q Consensus 85 ~~~l~a~~~l~RPht~igt~l~vl~g~llA~~~--~~~~~~~~~~~~l~~lva~l~~n~~~ngiNDyfD~E--IDk---- 156 (289)
..+.+.|.--.||...-++..++..|+.+|..+ ..|++ ....++. .++.+....++|.+|.|||.- ||+
T Consensus 58 ~~k~~syllalrpws~sasl~p~~lgsalayrs~~~~d~~--l~~~fl~-a~avlavh~agnlvntyfdf~kgid~kkad 134 (359)
T KOG4581|consen 58 FMKCASYLLALRPWSFSASLTPTALGSALAYRSHGAEDFR--LATFFLC-AFAVLAVHCAGNLVNTYFDFIKGIDHKKAD 134 (359)
T ss_pred HHHHHHHHhhhcccccccccchHhhhhHHHHhhccccchh--HHHHHHH-Hhhheeeecccchhhhhhhhhhcccccccc
Confidence 356778888899999999999999999998643 23443 3333333 233344567899999999974 776
Q ss_pred --------ccchhhhHhHHH--HHHHHHHH-HHHHHHHHHHHHHHHHHhcC---------CCC-------------cchH
Q 022970 157 --------LPLLRWKRFAVA--AAMCILAV-RAVVVQLAFYLHMQTHVYRR---------PAV-------------FSKP 203 (289)
Q Consensus 157 --------lPplRlKr~p~l--aa~~Il~v-~a~iv~lg~~l~~~t~~~g~---------p~~-------------~~~~ 203 (289)
+.+-..-|+... .+.|.-++ .++.-+.-+ -|..-..||+ .+. .-++
T Consensus 135 drtlvd~il~~~dvv~~g~~ly~~gc~~~~~l~~lsp~kl-ehlaliyfggls~sflytggigfkyialgdliili~fgp 213 (359)
T KOG4581|consen 135 DRTLVDHILEKDDVVRFGAFLYMAGCGCAACLAVLSPAKL-EHLALIYFGGLSGSFLYTGGIGFKYIALGDLIILILFGP 213 (359)
T ss_pred chhHHHHhcChhheehhhHHHHHhcchHHHHHHhCCHhhh-hhhhhhhccCcccceeEecccceEEEeccCEEEEEeech
Confidence 222222222211 12221111 000001000 0100001221 111 0112
Q ss_pred HHHHHHHHHH----------H-------HHHHHHHhcCCChhhhHhcCCccchhhhChHHHHHHHHHHHHHHHHHHHHHH
Q 022970 204 LIFATAFMSF----------F-------SVVIALFKDVPDLEGDKTFGIRTFTVRLGQKRVFWTCISLLEVAYTVAILVG 266 (289)
Q Consensus 204 V~~lt~f~~~----------f-------~~~i~i~KDi~DieGDr~~Gi~Tl~i~lG~k~a~~l~~~ll~~ay~~~i~~~ 266 (289)
+..+-+|+.- + +=+|-=.|+-+|.|.||+.||-|+++.+|+.....+-..++..-|++..+.+
T Consensus 214 iavlfaf~~q~g~l~~~~l~yaiplalnteailhsnntrd~dndr~agivtlailig~t~s~ily~~llf~py~lf~i~~ 293 (359)
T KOG4581|consen 214 IAVLFAFAIQTGHLAIFPLGYAIPLALNTEAILHSNNTRDADNDREAGIVTLAILIGPTASHILYAMLLFAPYLLFFIFA 293 (359)
T ss_pred HHHHHHHHHhcCceeEEeehheeeeccchHHHhccCCCcccccccccCeEEEEEeecccHHHHHHHHHHHHHHHHHHHHH
Confidence 2222222220 1 1144457899999999999999999999999998888888889999888777
Q ss_pred HhCc
Q 022970 267 ATSP 270 (289)
Q Consensus 267 ~~~~ 270 (289)
.-.+
T Consensus 294 ~~~s 297 (359)
T KOG4581|consen 294 LHCS 297 (359)
T ss_pred HHHH
Confidence 6443
No 53
>KOG1380 consensus Heme A farnesyltransferase [Coenzyme transport and metabolism]
Probab=93.63 E-value=0.015 Score=56.81 Aligned_cols=79 Identities=15% Similarity=0.089 Sum_probs=56.7
Q ss_pred hHHHHHHHHhhhccchhHHHHHHHHHHHHHhhcccCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhccc-------
Q 022970 84 VINALDAFYRFSRPHTVIGTALSIVSVALLAVEKVSDISPLFFTGVLEAIAAALMMNIYIVGLNQLSDIEIDK------- 156 (289)
Q Consensus 84 ~~~~l~a~~~l~RPht~igt~l~vl~g~llA~~~~~~~~~~~~~~~l~~lva~l~~n~~~ngiNDyfD~EIDk------- 156 (289)
..+.++.|||+++|.--+-..+...+||.+|-+. +++. .++..-+...+..+..|++||+++.+-|.
T Consensus 90 p~k~~~~y~eLsK~rLT~LVV~tt~~gYalap~p---~s~~---~l~~~tvGT~L~S~sANaiNQ~~E~~~DsqM~RT~~ 163 (409)
T KOG1380|consen 90 PGKYARCYLELSKPRLTMLVVLTTMTGYALAPGP---FSFP---TLLYTTVGTGLCSASANAINQIFEPPFDSQMKRTQN 163 (409)
T ss_pred CcchHHHHHHhcccceEEEEeeeccccccccccC---CCcc---hhHHHhhhhHHHHhhhHhhhhhccCCchhhhHhhcc
Confidence 3467889999999998777788888999887442 3321 33333444445567889999999999888
Q ss_pred --ccchhhhHhHHH
Q 022970 157 --LPLLRWKRFAVA 168 (289)
Q Consensus 157 --lPplRlKr~p~l 168 (289)
+|.+|+..--.+
T Consensus 164 Rplv~g~isp~hA~ 177 (409)
T KOG1380|consen 164 RPLVRGRISPLHAV 177 (409)
T ss_pred cccccCccChHHHH
Confidence 788877655433
No 54
>PRK12884 ubiA prenyltransferase; Reviewed
Probab=79.57 E-value=7.2 Score=36.10 Aligned_cols=47 Identities=19% Similarity=0.157 Sum_probs=32.6
Q ss_pred HHHHHHHHHHhcCCChhhhHhcCCccchhhhC---hHHHHHHHHHHHHHHH
Q 022970 212 SFFSVVIALFKDVPDLEGDKTFGIRTFTVRLG---QKRVFWTCISLLEVAY 259 (289)
Q Consensus 212 ~~f~~~i~i~KDi~DieGDr~~Gi~Tl~i~lG---~k~a~~l~~~ll~~ay 259 (289)
++...+-.++||+-|.|-|+++ .+.=|+.-| ++.+..++..+..++.
T Consensus 47 ~l~~~a~~~~Nd~~D~~~D~~~-r~~Rpl~~G~is~~~a~~~~~~~~~~~~ 96 (279)
T PRK12884 47 FFASGSANALNDYFDYEVDRIN-RPDRPIPSGRISRREALLLAILLFILGL 96 (279)
T ss_pred HHHHHHHHHHHhhhhHhhhhcc-CCCCCCCCCCCCHHHHHHHHHHHHHHHH
Confidence 3445667899999999999998 567777767 4556555554444433
No 55
>TIGR02056 ChlG chlorophyll synthase, ChlG. This model represents the strictly cyanobacterial and plant-specific chlorophyll synthase ChlG. ChlG is the enzyme (esterase) which attaches the side chain moiety onto chlorophyllide a. Both geranylgeranyl and phytyl pyrophosphates are substrates to varying degrees in enzymes from different sources. Thus, ChlG may act as the final or penultimate step in chlorophyll biosynthesis (along with the geranylgeranyl reductase, ChlP).
Probab=77.09 E-value=16 Score=34.82 Aligned_cols=55 Identities=11% Similarity=0.059 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHhcCCChhhhHhcCCccchhh---hChHHHHHHHHHHHHHHHHHHHHH
Q 022970 210 FMSFFSVVIALFKDVPDLEGDKTFGIRTFTVR---LGQKRVFWTCISLLEVAYTVAILV 265 (289)
Q Consensus 210 f~~~f~~~i~i~KDi~DieGDr~~Gi~Tl~i~---lG~k~a~~l~~~ll~~ay~~~i~~ 265 (289)
...+...+-+++||.-|.|-|++.+. +=|+. +.++.+..++..++.++.+..+.+
T Consensus 62 ~~~l~~~~~n~~NDy~D~d~D~~~~~-~Rpi~~G~is~~~a~~~~~~l~~~~~~lg~~l 119 (306)
T TIGR02056 62 SGPCLTGYTQTINDFYDRDIDAINEP-YRPIPSGAISEPEVITQIVLLFIAGIAIAFIL 119 (306)
T ss_pred HHHHHHHHHHHHHhHhhhhhhccCCC-CCCCCCCccCHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455667899999999999997763 33443 556777766666555554444433
No 56
>PRK12872 ubiA prenyltransferase; Reviewed
Probab=68.22 E-value=48 Score=30.62 Aligned_cols=27 Identities=15% Similarity=0.150 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHhcCCChhhhHhcCC
Q 022970 209 AFMSFFSVVIALFKDVPDLEGDKTFGI 235 (289)
Q Consensus 209 ~f~~~f~~~i~i~KDi~DieGDr~~Gi 235 (289)
...++...+-..+||..|.|-|+.+..
T Consensus 43 ~~~~~~~~~~~~~N~~~D~~~D~~n~~ 69 (285)
T PRK12872 43 LITFLIAAAVYIINYLTDLEEDIINKP 69 (285)
T ss_pred HHHHHHHHHHHHhhhhcCCchhhcCCC
Confidence 344556678889999999999987644
No 57
>PRK13592 ubiA prenyltransferase; Provisional
Probab=67.24 E-value=50 Score=32.06 Aligned_cols=76 Identities=14% Similarity=0.113 Sum_probs=43.3
Q ss_pred HHHHHHHhcCCCCcchHHHHH--HHHHHHHHHHHHHHhcCCChhhhHhcCCccchh---hhChHHHHHHHHHHHHHHHHH
Q 022970 187 LHMQTHVYRRPAVFSKPLIFA--TAFMSFFSVVIALFKDVPDLEGDKTFGIRTFTV---RLGQKRVFWTCISLLEVAYTV 261 (289)
Q Consensus 187 l~~~t~~~g~p~~~~~~V~~l--t~f~~~f~~~i~i~KDi~DieGDr~~Gi~Tl~i---~lG~k~a~~l~~~ll~~ay~~ 261 (289)
.|+.+.+..+...|....-.+ ....++++.+-.++||..|.|=||.+-= .=|+ +.-+|.+.+++..++.++...
T Consensus 29 ~~~~~~~~~~~~~~~~~~~~~l~~~~vf~~~~~gniiNDy~D~EIDrIN~P-~RPLPsG~VS~~~A~~~si~L~~~~l~L 107 (299)
T PRK13592 29 IYMITLLSNHISSFRIGIQEFVGVFTVFGFWMILRIADDFKDYETDRRLFP-HRALPSGRVKKKDLAIALSFIVAVSVLL 107 (299)
T ss_pred HHHHhhhccCCCCCCCchHHHHHHHHHHHHHHHhHHHHHHhhHHHhhhcCC-CCCCCcCCCCHHHHHHHHHHHHHHHHHH
Confidence 344454444444454432222 2223445677889999999999998732 2233 334566666666665555554
Q ss_pred HH
Q 022970 262 AI 263 (289)
Q Consensus 262 ~i 263 (289)
..
T Consensus 108 ~~ 109 (299)
T PRK13592 108 NV 109 (299)
T ss_pred HH
Confidence 43
No 58
>PRK12887 ubiA tocopherol phytyltransferase; Reviewed
Probab=64.84 E-value=25 Score=33.72 Aligned_cols=35 Identities=14% Similarity=0.117 Sum_probs=22.6
Q ss_pred HHhcCCChhhhHhcCCccchhhhC---hHHHHHHHHHHH
Q 022970 220 LFKDVPDLEGDKTFGIRTFTVRLG---QKRVFWTCISLL 255 (289)
Q Consensus 220 i~KDi~DieGDr~~Gi~Tl~i~lG---~k~a~~l~~~ll 255 (289)
.+||..|.|-||.+. ++.|+.=| ++.+..++..+.
T Consensus 71 ~iNd~~D~~iD~ink-p~rPiasG~ls~~~a~~~~~~~~ 108 (308)
T PRK12887 71 GLNQLTDIEIDRINK-PHLPLAAGEFSRRQGQRIVIITG 108 (308)
T ss_pred HHhhhhhHHHHhcCC-CCCCcCCcccCHHHHHHHHHHHH
Confidence 399999999999754 66665444 444444444333
No 59
>PRK13591 ubiA prenyltransferase; Provisional
Probab=64.41 E-value=1.4e+02 Score=28.96 Aligned_cols=42 Identities=10% Similarity=0.035 Sum_probs=28.0
Q ss_pred HHHHHHHhcCCCCcchHHHHHHHHHHHHHHHHHHHhcCCChhhhHhc
Q 022970 187 LHMQTHVYRRPAVFSKPLIFATAFMSFFSVVIALFKDVPDLEGDKTF 233 (289)
Q Consensus 187 l~~~t~~~g~p~~~~~~V~~lt~f~~~f~~~i~i~KDi~DieGDr~~ 233 (289)
.|+-..+.|.|..++..+ ...+.+.+.++.||.-|.|-|+.+
T Consensus 48 ~~~a~lL~g~~~~~~~~~-----~~~L~~~s~~~iNd~~D~eiD~IN 89 (307)
T PRK13591 48 IHIAFLLLGLQSSILTCI-----AGGLIIYSVYTLDRALDSEEDAVN 89 (307)
T ss_pred HHHHHHHhCCCcchHHHH-----HHHHHHHHHHHHhhhccchhhhcc
Confidence 344344466665554433 234456778999999999999885
No 60
>PF05106 Phage_holin_3: Phage holin family (Lysis protein S); InterPro: IPR006481 This entry is represented by the Bacteriophage lambda, GpS. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This protein family represent one of a large number of mutually dissimilar families of phage holins. Holins act against the host cell membrane to allow lytic enzymes of the phage to reach the bacterial cell wall. This family includes the product of the S gene of phage lambda.
Probab=62.80 E-value=41 Score=27.25 Aligned_cols=65 Identities=12% Similarity=0.161 Sum_probs=39.8
Q ss_pred CCchhhHHHHHHHHhhhccchhHHHHHHHHHHHHHhhcccCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhhhhh
Q 022970 79 SPLNSVINALDAFYRFSRPHTVIGTALSIVSVALLAVEKVSDISPLFFTGVLEAIAAALMMNIYIVGLNQLSDIE 153 (289)
Q Consensus 79 ~~~~~~~~~l~a~~~l~RPht~igt~l~vl~g~llA~~~~~~~~~~~~~~~l~~lva~l~~n~~~ngiNDyfD~E 153 (289)
..|..+.++++.+| ..+.++.++++...+-.......+.-..+-+.++.+++.....+ + ++|+..
T Consensus 6 ~~W~~ll~wl~~~~-----~~~~~a~lA~~mA~LR~~Y~g~~~~r~llea~lCg~lal~~~~~----L-~~~gl~ 70 (100)
T PF05106_consen 6 DFWAQLLAWLQSHW-----PQIYGALLAFVMALLRGAYGGGSWRRRLLEALLCGLLALFARSL----L-EYFGLP 70 (100)
T ss_pred cHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHH----H-HHhCCC
Confidence 48899999999998 66777777777777654333344444445555555555433322 3 566643
No 61
>PRK12324 phosphoribose diphosphate:decaprenyl-phosphate phosphoribosyltransferase; Provisional
Probab=62.44 E-value=24 Score=33.83 Aligned_cols=47 Identities=19% Similarity=0.290 Sum_probs=30.2
Q ss_pred HHHHHHHHhcCCChhhhHhcCC---ccchh-hhChHHHHHHHHHHHHHHHH
Q 022970 214 FSVVIALFKDVPDLEGDKTFGI---RTFTV-RLGQKRVFWTCISLLEVAYT 260 (289)
Q Consensus 214 f~~~i~i~KDi~DieGDr~~Gi---~Tl~i-~lG~k~a~~l~~~ll~~ay~ 260 (289)
.+-+..++||+-|.|=||++-. |-+|- ++.++.+..++..++.++.+
T Consensus 58 ~~sa~y~iND~~D~e~Dr~~prk~~RPlasG~is~~~A~~~~~~l~~~~l~ 108 (295)
T PRK12324 58 ASSAVYLVNDIRDVEADRLHPTKRNRPIASGVVSVSLAYILAVVLLVASLA 108 (295)
T ss_pred HHHHHHHHHhHHHHHhhccCCCCCCCCCCCCccCHHHHHHHHHHHHHHHHH
Confidence 3456779999999999999632 33322 35566666666555554443
No 62
>PF01040 UbiA: UbiA prenyltransferase family; InterPro: IPR000537 The UbiA family of prenyltransferases includes bacterial 4-hydroxybenzoate octaprenyltransferase (gene ubiA); yeast mitochondrial para-hydroxybenzoate--polyprenyltransferase (gene COQ2); and protohaem IX farnesyltransferase (haem O synthase) from yeast and mammals(gene COX10), and from bacteria (genes cyoE or ctaB) [, ]. These are integral membrane proteins, which probably contain seven transmembrane segments. The signature is also found in cytochrome C oxidase assembly factor. The complexity of cytochrome C oxidase requires assistance in building the complex, and this is carried out by the cytochrome C oxidase assembly factor.; GO: 0004659 prenyltransferase activity, 0016021 integral to membrane
Probab=61.78 E-value=59 Score=28.78 Aligned_cols=32 Identities=19% Similarity=0.288 Sum_probs=22.4
Q ss_pred HHHHHHHHHhcCCChhhhHhcC-CccchhhhCh
Q 022970 213 FFSVVIALFKDVPDLEGDKTFG-IRTFTVRLGQ 244 (289)
Q Consensus 213 ~f~~~i~i~KDi~DieGDr~~G-i~Tl~i~lG~ 244 (289)
+...+....||..|.|=|+... .+.-|+.-|+
T Consensus 34 ~~~~~~~~~Nd~~D~~~D~~~~~~~~rPl~~g~ 66 (257)
T PF01040_consen 34 LLQLAVYLLNDYFDYEEDRIHPNKPNRPLPSGR 66 (257)
T ss_pred HHHHHHHHhhChhhhhcCcccccccCcchhHHH
Confidence 5667788999999999999952 2333443343
No 63
>COG0382 UbiA 4-hydroxybenzoate polyprenyltransferase and related prenyltransferases [Coenzyme metabolism]
Probab=60.76 E-value=37 Score=31.76 Aligned_cols=44 Identities=20% Similarity=0.144 Sum_probs=26.8
Q ss_pred HHHHHHHHhcCCChhhhHhcCC-ccchhhhC---hHHHHHHHHHHHHH
Q 022970 214 FSVVIALFKDVPDLEGDKTFGI-RTFTVRLG---QKRVFWTCISLLEV 257 (289)
Q Consensus 214 f~~~i~i~KDi~DieGDr~~Gi-~Tl~i~lG---~k~a~~l~~~ll~~ 257 (289)
...+..++||+.|.|=||++-. +.=|+--| ++.+..++..++.+
T Consensus 59 ~~~ag~~iND~~D~eiD~~n~rt~~RPl~sG~vS~~~a~~~~~~~~~~ 106 (289)
T COG0382 59 ARSAGYVINDLADREIDRINPRTKNRPLPSGRVSVKEALLLAILLLLL 106 (289)
T ss_pred HHHHhHHHHHHhhhhccCCCCCccCCCCCCCCCCHHHHHHHHHHHHHH
Confidence 3445668999999999999876 33344333 34444444444333
No 64
>PRK13595 ubiA prenyltransferase; Provisional
Probab=60.76 E-value=52 Score=31.73 Aligned_cols=47 Identities=21% Similarity=0.108 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHhcCCChhhhHhcCCccchh---hhChHHHHHHHHHHHHH
Q 022970 210 FMSFFSVVIALFKDVPDLEGDKTFGIRTFTV---RLGQKRVFWTCISLLEV 257 (289)
Q Consensus 210 f~~~f~~~i~i~KDi~DieGDr~~Gi~Tl~i---~lG~k~a~~l~~~ll~~ 257 (289)
+..-....+..+||+-|.|-|+++-.+ =++ ++.++.+..++..++..
T Consensus 55 ~~~p~n~~~~giND~fD~eiDa~Npr~-~~i~~G~is~~~~~~~~~~~~~~ 104 (292)
T PRK13595 55 LTLPFNLLIYGLNDLADRETDAASPRK-GGWQGARLSPGEVRPLLRAVLLL 104 (292)
T ss_pred HHHHHHHHHHHHHhhhhhhhhccCCCC-CCCCcCccCHHHHHHHHHHHHHH
Confidence 444456688999999999999866543 333 44555555544433333
No 65
>TIGR01476 chlor_syn_BchG bacteriochlorophyll/chlorophyll synthetase. This model describes a subfamily of a large family of polyprenyltransferases (pfam01040) that also includes 4-hydroxybenzoate octaprenyltransferase and protoheme IX farnesyltransferase (heme O synthase). Members of this family are found exclusively in photosynthetic organisms, including a single copy in Arabidopsis thaliana.
Probab=59.81 E-value=30 Score=32.24 Aligned_cols=45 Identities=13% Similarity=0.097 Sum_probs=28.9
Q ss_pred HHHHHHHHHhcCCChhhhHhcCCccchh---hhChHHHHHHHHHHHHHH
Q 022970 213 FFSVVIALFKDVPDLEGDKTFGIRTFTV---RLGQKRVFWTCISLLEVA 258 (289)
Q Consensus 213 ~f~~~i~i~KDi~DieGDr~~Gi~Tl~i---~lG~k~a~~l~~~ll~~a 258 (289)
+...+-+++||.-|.|-|++.+ ++=|+ ++-+|.+.+++..++.++
T Consensus 49 l~~~~~n~~Nd~~D~~~D~~~~-~~Rpi~~G~is~~~a~~~~~~~~~~~ 96 (283)
T TIGR01476 49 LGTGFSQSINDYFDRDVDAINE-PQRPIPSGIISLREVRWNWLVLTVAG 96 (283)
T ss_pred HHHHHHHHHHhHhhhCcccCCC-CCCCCCCCCcCHHHHHHHHHHHHHHH
Confidence 3556678999999999999875 33444 344555655554444333
No 66
>PRK12882 ubiA prenyltransferase; Reviewed
Probab=59.26 E-value=28 Score=32.28 Aligned_cols=44 Identities=16% Similarity=0.040 Sum_probs=29.7
Q ss_pred HHHHHHHHhcCCChhhhHhcCCccchhhhC---hHHHHHHHHHHHHHH
Q 022970 214 FSVVIALFKDVPDLEGDKTFGIRTFTVRLG---QKRVFWTCISLLEVA 258 (289)
Q Consensus 214 f~~~i~i~KDi~DieGDr~~Gi~Tl~i~lG---~k~a~~l~~~ll~~a 258 (289)
...+-.++||+-|.|-||.+. +.=|+.-| ++.+..++..+..++
T Consensus 50 ~~~~~~~~Nd~~D~~iD~~~~-~~Rpl~~G~is~~~a~~~~~~l~~~g 96 (276)
T PRK12882 50 ATGAGNAINDYFDREIDRINR-PDRPIPSGAVSPRGALAFSILLFAAG 96 (276)
T ss_pred HHHHHHHHHHHhhhccccccC-CCCCcCCCCcCHHHHHHHHHHHHHHH
Confidence 445567999999999999754 55565555 566666555555443
No 67
>PRK09573 (S)-2,3-di-O-geranylgeranylglyceryl phosphate synthase; Reviewed
Probab=56.43 E-value=41 Score=31.32 Aligned_cols=46 Identities=22% Similarity=0.195 Sum_probs=30.5
Q ss_pred HHHHHHHHHhcCCChhhhHhcCCccchh---hhChHHHHHHHHHHHHHHH
Q 022970 213 FFSVVIALFKDVPDLEGDKTFGIRTFTV---RLGQKRVFWTCISLLEVAY 259 (289)
Q Consensus 213 ~f~~~i~i~KDi~DieGDr~~Gi~Tl~i---~lG~k~a~~l~~~ll~~ay 259 (289)
+...+-.++||+-|.|-|++.. +.=|+ ++.++.+..++..++.++-
T Consensus 48 l~~~~~~~iNd~~D~~iD~~~~-~~Rpl~sG~is~~~a~~~~~~l~~~~~ 96 (279)
T PRK09573 48 LVCAGGNVINDIYDIEIDKINK-PERPIPSGRISLKEAKIFSITLFIVGL 96 (279)
T ss_pred HHHHHHHHHHhhcccccccccC-CCCCcCCCccCHHHHHHHHHHHHHHHH
Confidence 3455677999999999999764 44454 3456666666655554443
No 68
>PLN00012 chlorophyll synthetase; Provisional
Probab=54.53 E-value=1e+02 Score=30.63 Aligned_cols=37 Identities=16% Similarity=0.027 Sum_probs=25.1
Q ss_pred HHHHHHHHhcCCChhhhHhcCCccchhhhC---hHHHHHHH
Q 022970 214 FSVVIALFKDVPDLEGDKTFGIRTFTVRLG---QKRVFWTC 251 (289)
Q Consensus 214 f~~~i~i~KDi~DieGDr~~Gi~Tl~i~lG---~k~a~~l~ 251 (289)
...+-+++||+-|.|-|++.+ +.=|+.-| ++.+...+
T Consensus 135 ~~~~an~iNDy~D~~iD~~~~-~~Rpi~sG~Is~~~al~~~ 174 (375)
T PLN00012 135 LTGYTQTINDWYDREIDAINE-PYRPIPSGAISENEVITQI 174 (375)
T ss_pred HHHHHHHHHCeecHhhhccCC-CCCCcCCCccCHHHHHHHH
Confidence 345578999999999999876 44454444 45555533
No 69
>PRK12883 ubiA prenyltransferase UbiA-like protein; Reviewed
Probab=53.41 E-value=48 Score=30.75 Aligned_cols=42 Identities=19% Similarity=0.101 Sum_probs=28.5
Q ss_pred HHHHHHHhcCCChhhhHhcCCccchhhh---ChHHHHHHHHHHHHH
Q 022970 215 SVVIALFKDVPDLEGDKTFGIRTFTVRL---GQKRVFWTCISLLEV 257 (289)
Q Consensus 215 ~~~i~i~KDi~DieGDr~~Gi~Tl~i~l---G~k~a~~l~~~ll~~ 257 (289)
..+-.++||+-|.|=|+.+. ++=|+.- -++.+..++..+..+
T Consensus 50 ~~a~~~~Nd~~D~~~D~~n~-~~Rpl~sG~is~~~a~~~~~~l~~~ 94 (277)
T PRK12883 50 CSGGNTINDYFDYEIDKINR-PNRPLPRGAMSRKAALYYSLLLFAV 94 (277)
T ss_pred HHHHhHHHhhhhHhccccCC-CCCCCCCCccCHHHHHHHHHHHHHH
Confidence 35678999999999999765 5555554 456666655544443
No 70
>PRK07566 bacteriochlorophyll/chlorophyll a synthase; Reviewed
Probab=49.20 E-value=43 Score=32.02 Aligned_cols=45 Identities=13% Similarity=0.065 Sum_probs=29.7
Q ss_pred HHHHHHHHhcCCChhhhHhcCCccchh---hhChHHHHHHHHHHHHHHH
Q 022970 214 FSVVIALFKDVPDLEGDKTFGIRTFTV---RLGQKRVFWTCISLLEVAY 259 (289)
Q Consensus 214 f~~~i~i~KDi~DieGDr~~Gi~Tl~i---~lG~k~a~~l~~~ll~~ay 259 (289)
...+-.++||+-|.|-||+.+ ++=|+ ++.++.+..++..++.++.
T Consensus 77 ~~~~~~~~Nd~~D~~~D~~~~-~~Rpl~sG~is~~~a~~~~~~l~~~~~ 124 (314)
T PRK07566 77 LCGTSQTLNDYFDREVDAINE-PYRPIPSGAISLRWVLYLIAVLTVLGL 124 (314)
T ss_pred HHHHHHHHhhhhccCccccCC-CCCCCCCceeCHHHHHHHHHHHHHHHH
Confidence 445667999999999999764 33444 4455666666655554444
No 71
>COG1575 MenA 1,4-dihydroxy-2-naphthoate octaprenyltransferase [Coenzyme metabolism]
Probab=48.10 E-value=54 Score=31.91 Aligned_cols=33 Identities=27% Similarity=0.157 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHhhhhhhhhhhccc-----ccchhhhHh
Q 022970 133 IAAALMMNIYIVGLNQLSDIEIDK-----LPLLRWKRF 165 (289)
Q Consensus 133 lva~l~~n~~~ngiNDyfD~EIDk-----lPplRlKr~ 165 (289)
-+++......++-.|...|+|-|+ =++.|+.+.
T Consensus 182 slp~gil~~~Il~aNNirDie~D~~~gk~TLavrLG~~ 219 (303)
T COG1575 182 SLPVGILIANILLANNLRDIEEDIRNGKYTLAVRLGRK 219 (303)
T ss_pred HHHHHHHHHHHHHhcccccchhHHhcCCcceeeeeccH
Confidence 445555566778899999999999 455566444
No 72
>cd00867 Trans_IPPS Trans-Isoprenyl Diphosphate Synthases. Trans-Isoprenyl Diphosphate Synthases (Trans_IPPS) of class 1 isoprenoid biosynthesis enzymes which either synthesis geranyl/farnesyl diphosphates (GPP/FPP) or longer chained products from isoprene precursors, isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP), or use geranyl (C10)-, farnesyl (C15)-, or geranylgeranyl (C20)-diphosphate as substrate. These enzymes produce a myriad of precursors for such end products as steroids, cholesterol, sesquiterpenes, heme, carotenoids, retinoids, diterpenes, ubiquinone, and archaeal ether linked lipids; and are widely distributed among archaea, bacteria, and eukareya. The enzymes in this family share the same 'isoprenoid synthase fold' and include the head-to-tail (HT) IPPS which catalyze the successive 1'-4 condensation of the 5-carbon IPP to the growing isoprene chain to form linear, all-trans, C10-, C15-, C20- C25-, C30-, C35-, C40-, C45-, or C50-isoprenoid diphosphates
Probab=48.05 E-value=23 Score=31.36 Aligned_cols=43 Identities=23% Similarity=0.244 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHhcCCChhhhH----------hcCCccchhhhChHHHHHHH
Q 022970 209 AFMSFFSVVIALFKDVPDLEGDK----------TFGIRTFTVRLGQKRVFWTC 251 (289)
Q Consensus 209 ~f~~~f~~~i~i~KDi~DieGDr----------~~Gi~Tl~i~lG~k~a~~l~ 251 (289)
-+..-...+-.+.+|+.|+.+|. +.|..|+|....++.....+
T Consensus 153 ~~~~~lG~a~Qi~dd~~D~~~d~~~~gk~~~D~~~gr~tlp~~~~~~~~~~~~ 205 (236)
T cd00867 153 DYGRALGLAFQLTDDLLDVFGDAEELGKVGSDLREGRITLPVILARERAAEYA 205 (236)
T ss_pred HHHHHHHHHHHHHHHhccccCChHHHCccHHHHHcCCchHHHHHHHHHHHHHH
Confidence 34444566677999999999998 89999999999855555443
No 73
>PRK12888 ubiA prenyltransferase; Reviewed
Probab=47.79 E-value=1.9e+02 Score=27.36 Aligned_cols=17 Identities=18% Similarity=0.008 Sum_probs=13.7
Q ss_pred HHHHhhhhhhhhhhccc
Q 022970 140 NIYIVGLNQLSDIEIDK 156 (289)
Q Consensus 140 n~~~ngiNDyfD~EIDk 156 (289)
+..-..+|++.|+|=||
T Consensus 172 ~~~~~~i~a~~D~e~D~ 188 (284)
T PRK12888 172 IGGFDLIYACQDAEVDR 188 (284)
T ss_pred HHHHHHHHHhhhHHHHH
Confidence 34556799999999998
No 74
>PRK12875 ubiA prenyltransferase; Reviewed
Probab=46.99 E-value=2.6e+02 Score=26.53 Aligned_cols=20 Identities=20% Similarity=0.119 Sum_probs=16.3
Q ss_pred HHHHhcCCChhhhHhcCCcc
Q 022970 218 IALFKDVPDLEGDKTFGIRT 237 (289)
Q Consensus 218 i~i~KDi~DieGDr~~Gi~T 237 (289)
+-.+||+-|.|-||.+-.|.
T Consensus 61 ~y~iND~~D~D~Dr~~prk~ 80 (282)
T PRK12875 61 LYGVNDVFDADTDELNPKKD 80 (282)
T ss_pred HhcchhhhhhhccccCCCcc
Confidence 34479999999999887765
No 75
>TIGR01475 ubiA_other putative 4-hydroxybenzoate polyprenyltransferase. A fairly deep split separates this polyprenyltransferase subfamily from the set of mitochondrial and proteobacterial 4-hydroxybenzoate polyprenyltransferases, described in TIGR01474. Protoheme IX farnesyltransferase (heme O synthase) (TIGR01473) is more distantly related. Because no species appears to have both this protein and a member of TIGR01474, it is likely that This model represents 4-hydroxybenzoate polyprenyltransferase, a critical enzyme of ubiquinone biosynthesis, in the Archaea, Gram-positive bacteria, Aquifex aeolicus, the Chlamydias, etc.
Probab=42.60 E-value=2.8e+02 Score=25.73 Aligned_cols=17 Identities=18% Similarity=0.126 Sum_probs=13.3
Q ss_pred HHHHhhhhhhhhhhccc
Q 022970 140 NIYIVGLNQLSDIEIDK 156 (289)
Q Consensus 140 n~~~ngiNDyfD~EIDk 156 (289)
+.....+||..|+|=|+
T Consensus 171 ~~~~~~i~~~~D~e~D~ 187 (282)
T TIGR01475 171 IAGFDLIYAIQDYEFDR 187 (282)
T ss_pred HHHHHHHHHHhhHHhHH
Confidence 33445699999999998
No 76
>PRK12869 ubiA protoheme IX farnesyltransferase; Reviewed
Probab=41.26 E-value=1.2e+02 Score=28.46 Aligned_cols=46 Identities=20% Similarity=0.107 Sum_probs=29.9
Q ss_pred HHHHHHHHHhcCCChhhhHhcCC---ccchh-hhChHHHHHHHHHHHHHH
Q 022970 213 FFSVVIALFKDVPDLEGDKTFGI---RTFTV-RLGQKRVFWTCISLLEVA 258 (289)
Q Consensus 213 ~f~~~i~i~KDi~DieGDr~~Gi---~Tl~i-~lG~k~a~~l~~~ll~~a 258 (289)
+...+-.++||+-|.|-|++..+ |.+|- ++.++.+..++..++.++
T Consensus 47 l~~~a~~~~Nd~~D~~iD~~~~Rt~~RPl~sG~is~~~a~~~~~~~~~~~ 96 (279)
T PRK12869 47 LASGGSAAFNHGIERDIDKVMSRTSKRPTPVGLVNRKEALAVGSALSALG 96 (279)
T ss_pred HHHHHHHHHhchHhcCCCCCCCCCCCCCcCCCCcCHHHHHHHHHHHHHHH
Confidence 33556789999999999998653 44433 345666666655544433
No 77
>PLN02809 4-hydroxybenzoate nonaprenyltransferase
Probab=39.30 E-value=2.9e+02 Score=26.26 Aligned_cols=41 Identities=15% Similarity=-0.044 Sum_probs=27.1
Q ss_pred HHHHHHHhcCCChhhhHhcCC-ccchhhhC---hHHHHHHHHHHH
Q 022970 215 SVVIALFKDVPDLEGDKTFGI-RTFTVRLG---QKRVFWTCISLL 255 (289)
Q Consensus 215 ~~~i~i~KDi~DieGDr~~Gi-~Tl~i~lG---~k~a~~l~~~ll 255 (289)
.-+=..+||+-|.|=|++..+ +.=|+.-| ++.+..+...++
T Consensus 58 ~~a~~~~Nd~~Dr~iD~~~~RT~~RPL~sG~is~~~A~~~~~~~~ 102 (289)
T PLN02809 58 RGAGCTINDLLDRDIDKKVERTKLRPIASGALTPFQGVGFLGAQL 102 (289)
T ss_pred HHHHHHHHhhHHhccccCCCCCCCCCCCCCCCCHHHHHHHHHHHH
Confidence 345569999999999998654 45676666 455544444333
No 78
>PRK12895 ubiA prenyltransferase; Reviewed
Probab=37.91 E-value=2.4e+02 Score=26.88 Aligned_cols=73 Identities=8% Similarity=0.015 Sum_probs=39.7
Q ss_pred HHHHHHHhcCCChhhhHhcCCc-cchh---hhChHHHHHHHHHHHHHHHHHHH------------HHHHhCchhhHHHHH
Q 022970 215 SVVIALFKDVPDLEGDKTFGIR-TFTV---RLGQKRVFWTCISLLEVAYTVAI------------LVGATSPFAWSKLIT 278 (289)
Q Consensus 215 ~~~i~i~KDi~DieGDr~~Gi~-Tl~i---~lG~k~a~~l~~~ll~~ay~~~i------------~~~~~~~~~~~~~~~ 278 (289)
.-+=..+||+-|.|=|++.-++ .=|+ ++.++.+..++..++.++.+... .+.....+.+-|-+|
T Consensus 50 rsag~~~Ndi~Dr~iD~~~~RT~~RPLpsG~is~~~A~~~~~~~~~~~~~~~~~ln~l~~~l~~~~~~l~~~yp~~KR~t 129 (286)
T PRK12895 50 RTSAMSINRIEGLRYDMINPRKKDWALVSGRIKMREAIAFTIIFIAIFEICTFLLNRLVFILSPIVIFLFIIDPFLKRYT 129 (286)
T ss_pred HHHHHHHHhHHHhcccCCCCcCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhCc
Confidence 3445599999999999988332 2222 34556666655554444333221 111112234556666
Q ss_pred HHHHHHHHh
Q 022970 279 DLGRSILAL 287 (289)
Q Consensus 279 ~~~h~~l~~ 287 (289)
-.+|.++..
T Consensus 130 ~~~~~~lG~ 138 (286)
T PRK12895 130 AWRHIYMGS 138 (286)
T ss_pred cccHHHHHH
Confidence 677766543
No 79
>PRK12886 ubiA prenyltransferase; Reviewed
Probab=37.42 E-value=96 Score=29.38 Aligned_cols=12 Identities=42% Similarity=0.600 Sum_probs=10.0
Q ss_pred hhhhhhhhhccc
Q 022970 145 GLNQLSDIEIDK 156 (289)
Q Consensus 145 giNDyfD~EIDk 156 (289)
.+|.+.|+|-|+
T Consensus 180 ~~~a~~D~e~D~ 191 (291)
T PRK12886 180 ILYALQDLEFDR 191 (291)
T ss_pred HHHHhccHHhHH
Confidence 477789999998
No 80
>PRK06080 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Validated
Probab=36.41 E-value=81 Score=29.40 Aligned_cols=17 Identities=29% Similarity=0.315 Sum_probs=13.9
Q ss_pred HHHHhhhhhhhhhhccc
Q 022970 140 NIYIVGLNQLSDIEIDK 156 (289)
Q Consensus 140 n~~~ngiNDyfD~EIDk 156 (289)
......+||+-|+|-||
T Consensus 181 ~~~~~~~n~~~D~~~D~ 197 (293)
T PRK06080 181 IGAVLLANNIRDIETDR 197 (293)
T ss_pred HHHHHHhcCCCcchhHH
Confidence 34555789999999999
No 81
>TIGR00765 yihY_not_rbn YihY family protein (not ribonuclease BN). Members of this subfamily include the largely uncharacterized BrkB (Bordetella resist killing by serum B) from Bordetella pertussis. Some members have an additional C-terminal domain. Paralogs from E. coli (yhjD) and Mycobactrium tuberculosis (Rv3335c) are part of a smaller, related subfamily that form their own cluster.
Probab=35.93 E-value=3.4e+02 Score=24.78 Aligned_cols=22 Identities=23% Similarity=0.267 Sum_probs=12.3
Q ss_pred HHHHHHHHHhhhhhhhhhhccc
Q 022970 135 AALMMNIYIVGLNQLSDIEIDK 156 (289)
Q Consensus 135 a~l~~n~~~ngiNDyfD~EIDk 156 (289)
++-.++....++|+.||.|-+|
T Consensus 96 as~~~~~l~~~ln~i~~~~~~r 117 (259)
T TIGR00765 96 ALLLINNIDSTLNKIWRVKPRR 117 (259)
T ss_pred HHHHHHHHHHHHHHHhCCCCCC
Confidence 3334455566677777665443
No 82
>PRK12392 bacteriochlorophyll c synthase; Provisional
Probab=35.76 E-value=2.6e+02 Score=27.17 Aligned_cols=45 Identities=24% Similarity=0.314 Sum_probs=29.8
Q ss_pred HHHHhcCCChhhhHhcCCccchhhh---ChHHHHHHHHHHHHHHHHHHH
Q 022970 218 IALFKDVPDLEGDKTFGIRTFTVRL---GQKRVFWTCISLLEVAYTVAI 263 (289)
Q Consensus 218 i~i~KDi~DieGDr~~Gi~Tl~i~l---G~k~a~~l~~~ll~~ay~~~i 263 (289)
-.++||+-|.|=|+..+ +|=|+.- .++.+..++..+..++.+..+
T Consensus 66 ~~~iND~~D~~~D~~n~-rtRpl~~G~is~~~al~~~~~l~~la~~lg~ 113 (331)
T PRK12392 66 SQSVNDYFDLELDRVNE-PTRPIPSGRLSEKEALWNSIIVLLLAIGLGV 113 (331)
T ss_pred HhHHhcceeecccccCC-CCCCCCcCCcCHHHHHHHHHHHHHHHHHHHH
Confidence 46899999999999765 3455444 467777766666555443333
No 83
>PRK13106 ubiA prenyltransferase; Reviewed
Probab=34.91 E-value=1.3e+02 Score=28.91 Aligned_cols=38 Identities=11% Similarity=-0.057 Sum_probs=23.6
Q ss_pred HHHHHHHHhcCCChhhhHhcCC-ccchhh---hChHHHHHHH
Q 022970 214 FSVVIALFKDVPDLEGDKTFGI-RTFTVR---LGQKRVFWTC 251 (289)
Q Consensus 214 f~~~i~i~KDi~DieGDr~~Gi-~Tl~i~---lG~k~a~~l~ 251 (289)
...+-.++||+-|.|=|++.-+ +.=|+. +.++.+..+.
T Consensus 61 ~~~a~~~~Nd~~D~diD~~~~RT~~RPl~sG~is~~~A~~~~ 102 (300)
T PRK13106 61 LRTAGMTNDNLADLEIDAKNPRTKNRPLVTGAIKISEAKALI 102 (300)
T ss_pred HHHHHHHHHhhHHhccccCCCccCCCCCCCCCcCHHHHHHHH
Confidence 3445568999999999998742 123333 4455555444
No 84
>PRK13362 protoheme IX farnesyltransferase; Provisional
Probab=34.29 E-value=4.2e+02 Score=25.33 Aligned_cols=45 Identities=9% Similarity=0.003 Sum_probs=28.5
Q ss_pred HHHHHHHHHhcCCChhhhHhcCC---ccchh-hhChHHHHHHHHHHHHH
Q 022970 213 FFSVVIALFKDVPDLEGDKTFGI---RTFTV-RLGQKRVFWTCISLLEV 257 (289)
Q Consensus 213 ~f~~~i~i~KDi~DieGDr~~Gi---~Tl~i-~lG~k~a~~l~~~ll~~ 257 (289)
+.+-+-.++||+-|.|=|++..+ |-+|- ++.++.+..++..++.+
T Consensus 58 l~~aaa~~~Nd~~D~~iD~~~~Rt~~RPlpsG~is~~~A~~~~~~l~~~ 106 (306)
T PRK13362 58 LVVASGCALNNCIDRDIDAKMQRTRNRVTVTGEISLGEALGFGLALGVA 106 (306)
T ss_pred HHHHHHHHHhChHHhCcCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH
Confidence 34457789999999999987644 33332 34456666655544433
No 85
>PRK13387 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Provisional
Probab=34.12 E-value=4.3e+02 Score=25.37 Aligned_cols=22 Identities=23% Similarity=0.255 Sum_probs=16.2
Q ss_pred HHHHHHHHHhhhhhhhhhhccc
Q 022970 135 AALMMNIYIVGLNQLSDIEIDK 156 (289)
Q Consensus 135 a~l~~n~~~ngiNDyfD~EIDk 156 (289)
+..+....+.-.|++-|+|-|+
T Consensus 197 p~g~l~~~ill~Nn~~D~e~D~ 218 (317)
T PRK13387 197 PIIFTIANIMLANNLRDLDEDI 218 (317)
T ss_pred HHHHHHHHHHHhcCCccchhHH
Confidence 3334445556799999999999
No 86
>TIGR01473 cyoE_ctaB protoheme IX farnesyltransferase. This model describes protoheme IX farnesyltransferase, also called heme O synthase, an enzyme that creates an intermediate in the biosynthesis of heme A. Prior to the description of its enzymatic function, this protein was often called a cytochrome o ubiquinol oxidase assembly factor.
Probab=33.52 E-value=2e+02 Score=26.66 Aligned_cols=46 Identities=15% Similarity=0.133 Sum_probs=29.7
Q ss_pred HHHHHHHHHhcCCChhhhHhcCC---ccchh-hhChHHHHHHHHHHHHHH
Q 022970 213 FFSVVIALFKDVPDLEGDKTFGI---RTFTV-RLGQKRVFWTCISLLEVA 258 (289)
Q Consensus 213 ~f~~~i~i~KDi~DieGDr~~Gi---~Tl~i-~lG~k~a~~l~~~ll~~a 258 (289)
+...+-.++||+-|.|=|++..+ |.+|- ++.++.+..++..++.++
T Consensus 46 l~~~a~~~~Nd~~D~~iD~~~~Rt~~Rpl~sG~is~~~a~~~~~~~~~~g 95 (280)
T TIGR01473 46 LAAASANAFNMYIDRDIDKKMKRTRNRPLVTGRISPREALAFGLLLGVLG 95 (280)
T ss_pred HHHHHHHHHHhhcccCcCCCCCCCCCCCCCCCCcCHHHHHHHHHHHHHHH
Confidence 34456679999999999997432 43333 455666766665554443
No 87
>PRK10299 PhoPQ regulatory protein; Provisional
Probab=32.86 E-value=49 Score=23.70 Aligned_cols=23 Identities=17% Similarity=0.411 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhhcc
Q 022970 131 EAIAAALMMNIYIVGLNQLSDIEID 155 (289)
Q Consensus 131 ~~lva~l~~n~~~ngiNDyfD~EID 155 (289)
..+++|++ .|.+++|-++|.+.|
T Consensus 11 ~iv~~Cl~--lyl~ald~~CDQg~~ 33 (47)
T PRK10299 11 VVVLACLL--LWAQVFNMMCDQDVQ 33 (47)
T ss_pred HHHHHHHH--HHHHHHHHHhcCCcc
Confidence 34556666 599999999999854
No 88
>PRK04375 protoheme IX farnesyltransferase; Provisional
Probab=31.40 E-value=1.7e+02 Score=27.54 Aligned_cols=43 Identities=12% Similarity=0.089 Sum_probs=27.3
Q ss_pred HHHHHHHHhcCCChhhhHhcCC---ccch-hhhChHHHHHHHHHHHH
Q 022970 214 FSVVIALFKDVPDLEGDKTFGI---RTFT-VRLGQKRVFWTCISLLE 256 (289)
Q Consensus 214 f~~~i~i~KDi~DieGDr~~Gi---~Tl~-i~lG~k~a~~l~~~ll~ 256 (289)
...+=.++||+-|.|=|++..+ |.+| =++.++.+..++..++.
T Consensus 56 ~~aa~~~iNd~~D~~iD~~~~Rt~~Rpl~sG~is~~~a~~~~~~l~~ 102 (296)
T PRK04375 56 VAGAAGALNNYIDRDIDAKMERTKNRPLVTGRISPREALIFGLVLGV 102 (296)
T ss_pred HHHHHHHHHhHHhhccCCCCCccCCCCCCCCCcCHHHHHHHHHHHHH
Confidence 3445679999999999998542 3333 24456666666544443
No 89
>KOG4016 consensus Synaptic vesicle protein Synaptogyrin involved in regulation of Ca2+-dependent exocytosis [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=31.39 E-value=4.5e+02 Score=24.71 Aligned_cols=39 Identities=18% Similarity=0.240 Sum_probs=26.7
Q ss_pred hhhcccccchhhhHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 022970 151 DIEIDKLPLLRWKRFAVAAAMCILAVRAVVVQLAFYLHM 189 (289)
Q Consensus 151 D~EIDklPplRlKr~p~laa~~Il~v~a~iv~lg~~l~~ 189 (289)
|..-|+|-+.|-||...++=+..-..++++...|+....
T Consensus 89 D~~f~qISsv~~RkraVl~Dl~~SalwtflwfvGFc~l~ 127 (233)
T KOG4016|consen 89 DVYFPQISSVKDRKRAVLADLGVSALWAFLWFVGFCFLA 127 (233)
T ss_pred HhhhhhhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555566777777888777766665667777777765443
No 90
>PRK12847 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed
Probab=31.33 E-value=4.4e+02 Score=24.57 Aligned_cols=16 Identities=19% Similarity=-0.012 Sum_probs=12.3
Q ss_pred HHHhhhhhhhhhhccc
Q 022970 141 IYIVGLNQLSDIEIDK 156 (289)
Q Consensus 141 ~~~ngiNDyfD~EIDk 156 (289)
..--.+|+..|+|=|+
T Consensus 179 ~~~~~~~a~~D~e~D~ 194 (285)
T PRK12847 179 IGYDTIYAYQDKKDDL 194 (285)
T ss_pred HHHHHHHHhccHhhHH
Confidence 3334578999999998
No 91
>PF06645 SPC12: Microsomal signal peptidase 12 kDa subunit (SPC12); InterPro: IPR009542 This family consists of several microsomal signal peptidase 12 kDa subunit proteins. Translocation of polypeptide chains across the endoplasmic reticulum (ER) membrane is triggered by signal sequences. Subsequently, signal recognition particle interacts with its membrane receptor and the ribosome-bound nascent chain is targeted to the ER where it is transferred into a protein-conducting channel. At some point, a second signal sequence recognition event takes place in the membrane and translocation of the nascent chain through the membrane occurs. The signal sequence of most secretory and membrane proteins is cleaved off at this stage. Cleavage occurs by the signal peptidase complex (SPC) as soon as the lumenal domain of the translocating polypeptide is large enough to expose its cleavage site to the enzyme. The signal peptidase complex is possibly also involved in proteolytic events in the ER membrane other than the processing of the signal sequence, for example the further digestion of the cleaved signal peptide or the degradation of membrane proteins. Mammalian signal peptidase is as a complex of five different polypeptide chains. This family represents the 12 kDa subunit (SPC12).; GO: 0008233 peptidase activity, 0006465 signal peptide processing, 0005787 signal peptidase complex, 0016021 integral to membrane
Probab=30.43 E-value=1.8e+02 Score=22.35 Aligned_cols=42 Identities=12% Similarity=0.029 Sum_probs=30.2
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHhCchhhHHHHHHHHHHH
Q 022970 243 GQKRVFWTCISLLEVAYTVAILVGATSPFAWSKLITDLGRSI 284 (289)
Q Consensus 243 G~k~a~~l~~~ll~~ay~~~i~~~~~~~~~~~~~~~~~~h~~ 284 (289)
|+|.+-.+.-.++.+.-+++.+.|......-....+.++=.+
T Consensus 5 gQ~~ae~l~~~il~~~~iisfi~Gy~~q~~~~~~~~~~~g~~ 46 (76)
T PF06645_consen 5 GQRLAEKLMQYILIISAIISFIVGYITQSFSYTFYIYGAGVV 46 (76)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 788999999999999999998899876655444443333333
No 92
>PLN02922 prenyltransferase
Probab=28.87 E-value=5.3e+02 Score=24.82 Aligned_cols=18 Identities=17% Similarity=0.239 Sum_probs=14.7
Q ss_pred HHHHHhhhhhhhhhhccc
Q 022970 139 MNIYIVGLNQLSDIEIDK 156 (289)
Q Consensus 139 ~n~~~ngiNDyfD~EIDk 156 (289)
....+.-.|+.-|+|-|+
T Consensus 200 l~~~iL~~Nn~rD~e~D~ 217 (315)
T PLN02922 200 TTTLILFCSHFHQIDGDR 217 (315)
T ss_pred HHHHHHHHccCcchhhHH
Confidence 344566799999999999
No 93
>PRK04214 rbn ribonuclease BN/unknown domain fusion protein; Reviewed
Probab=27.37 E-value=3.1e+02 Score=27.17 Aligned_cols=15 Identities=7% Similarity=-0.199 Sum_probs=8.2
Q ss_pred ccchhhhHhHHHHHH
Q 022970 157 LPLLRWKRFAVAAAM 171 (289)
Q Consensus 157 lPplRlKr~p~laa~ 171 (289)
+|.-|.|....+.+.
T Consensus 201 ~Pn~~v~~r~al~Ga 215 (412)
T PRK04214 201 VPNHFVPLRHALPGA 215 (412)
T ss_pred cCCCccchHHhHHHH
Confidence 676666555444433
No 94
>PRK07419 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Provisional
Probab=26.92 E-value=5.7e+02 Score=24.52 Aligned_cols=17 Identities=18% Similarity=0.161 Sum_probs=14.1
Q ss_pred HHHHhhhhhhhhhhccc
Q 022970 140 NIYIVGLNQLSDIEIDK 156 (289)
Q Consensus 140 n~~~ngiNDyfD~EIDk 156 (289)
...+.-.||+-|+|-||
T Consensus 187 ~~~IL~~Nn~rD~e~D~ 203 (304)
T PRK07419 187 TSLILFCSHFHQVEDDL 203 (304)
T ss_pred HHHHHHHcCCcchhhHH
Confidence 34566689999999999
No 95
>PRK12873 ubiA prenyltransferase; Reviewed
Probab=26.78 E-value=1.8e+02 Score=27.98 Aligned_cols=43 Identities=19% Similarity=0.110 Sum_probs=28.3
Q ss_pred HHHHHHHHhcCCChhhhHhcCC-ccchhh---hChHHHHHHHHHHHH
Q 022970 214 FSVVIALFKDVPDLEGDKTFGI-RTFTVR---LGQKRVFWTCISLLE 256 (289)
Q Consensus 214 f~~~i~i~KDi~DieGDr~~Gi-~Tl~i~---lG~k~a~~l~~~ll~ 256 (289)
..-+-.++||+-|.|=||+.-+ +.=|+. +.++.+..++..++.
T Consensus 56 ~~~a~~~~Nd~~D~~iD~~~~RT~~RPl~sG~is~~~A~~~~~~~~~ 102 (294)
T PRK12873 56 VSGAGCIANDLWDRRIDRKVERTKNRPLARGKISLKTAYSLLIVLLL 102 (294)
T ss_pred HHHHHHHHHHHHHHhhccCCCcCCCCCCCCCCCCHHHHHHHHHHHHH
Confidence 3445669999999999998876 355544 445555555544433
No 96
>PRK12848 ubiA 4-hydroxybenzoate octaprenyltransferase; Reviewed
Probab=26.69 E-value=2e+02 Score=26.91 Aligned_cols=44 Identities=16% Similarity=0.150 Sum_probs=27.3
Q ss_pred HHHHHHHhcCCChhhhHhcCC-ccchhh---hChHHHHHHHHHHHHHH
Q 022970 215 SVVIALFKDVPDLEGDKTFGI-RTFTVR---LGQKRVFWTCISLLEVA 258 (289)
Q Consensus 215 ~~~i~i~KDi~DieGDr~~Gi-~Tl~i~---lG~k~a~~l~~~ll~~a 258 (289)
..+-.++||+-|.|=|++..+ +.=|+. +.++.+...+..++.++
T Consensus 55 ~~a~~~~Nd~~D~~iD~~~~Rt~~RPl~sG~is~~~a~~~~~~l~~~~ 102 (282)
T PRK12848 55 RAAGCVINDYADRDFDGHVKRTKNRPLASGAVSEKEALALFVVLVLVA 102 (282)
T ss_pred HHHHHHHHhhHHhccCCCCCCCCCCCCCCCCcCHHHHHHHHHHHHHHH
Confidence 456679999999999985443 123433 44566666555554444
No 97
>PRK05951 ubiA prenyltransferase; Reviewed
Probab=26.52 E-value=5.5e+02 Score=24.20 Aligned_cols=46 Identities=15% Similarity=0.104 Sum_probs=27.1
Q ss_pred HHHHHHHHhcCCChhhhHhcCC------ccchh-hhChHHHHHHHHHHHHHHH
Q 022970 214 FSVVIALFKDVPDLEGDKTFGI------RTFTV-RLGQKRVFWTCISLLEVAY 259 (289)
Q Consensus 214 f~~~i~i~KDi~DieGDr~~Gi------~Tl~i-~lG~k~a~~l~~~ll~~ay 259 (289)
...+-+++||..|.|=|+.... |+++- ++-++.+.+.+..++.++-
T Consensus 52 ~~~~~n~~Ndy~D~~~g~D~~~rt~~~~r~l~~G~is~~~~~~~~~~~~~ia~ 104 (296)
T PRK05951 52 LHASLNVFNDYKDYVLDCDHHETTGYRQHPIQAGIMTLGHLRVLGIALGAIAL 104 (296)
T ss_pred HHHHHHHHHhHHHHhcCCccccccCCCCCccccCCcCHHHHHHHHHHHHHHHH
Confidence 4456789999999555444432 22221 3556777777666555543
No 98
>TIGR00751 menA 1,4-dihydroxy-2-naphthoate octaprenyltransferase. This membrane-associated enzyme converts 1,4-dihydroxy-2-naphthoic acid (DHNA) to demethylmenaquinone, a step in menaquinone biosynthesis.
Probab=24.68 E-value=5.1e+02 Score=24.51 Aligned_cols=57 Identities=11% Similarity=0.102 Sum_probs=36.0
Q ss_pred HHHHHHHHHhcCCChh-----hhHhcCCccchh-hhChHHHHHHHHHHHHHHHHHHHHHHHhC
Q 022970 213 FFSVVIALFKDVPDLE-----GDKTFGIRTFTV-RLGQKRVFWTCISLLEVAYTVAILVGATS 269 (289)
Q Consensus 213 ~f~~~i~i~KDi~Die-----GDr~~Gi~Tl~i-~lG~k~a~~l~~~ll~~ay~~~i~~~~~~ 269 (289)
+.-.+-++.||..|-+ .||..+.|.++- .+-+|.+.+++..++.++-+..+.+....
T Consensus 39 ~~q~~~N~~NDy~D~~~G~D~~~~~~~~r~i~~g~is~~~v~~~~~~~~~~a~~~Gi~l~~~~ 101 (284)
T TIGR00751 39 LLQILSNYANDYGDGIKGSDTDDRIGPLRGVQKGLITPREVKTALITSVALGALSGLVLALLA 101 (284)
T ss_pred HHHHHHHHHHhHHHHhcCCChhhccCCcchhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3456788999999973 345445555432 34457777777777776666655554433
No 99
>PRK01637 hypothetical protein; Reviewed
Probab=24.44 E-value=5.8e+02 Score=23.77 Aligned_cols=12 Identities=17% Similarity=0.335 Sum_probs=5.2
Q ss_pred hhhHHHHHHHHh
Q 022970 82 NSVINALDAFYR 93 (289)
Q Consensus 82 ~~~~~~l~a~~~ 93 (289)
+.+.+.++.+.+
T Consensus 77 ~~i~~~l~~~~~ 88 (286)
T PRK01637 77 DVVQEYIEQFVA 88 (286)
T ss_pred HHHHHHHHHHHH
Confidence 334444444443
No 100
>PF04341 DUF485: Protein of unknown function, DUF485; InterPro: IPR007436 This family includes several putative integral membrane proteins.
Probab=23.97 E-value=3.6e+02 Score=21.14 Aligned_cols=73 Identities=18% Similarity=0.086 Sum_probs=43.6
Q ss_pred hHHHHHHHHhhhccchhHHHHHHHHHHHHHhhc------ccC--CCChHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcc
Q 022970 84 VINALDAFYRFSRPHTVIGTALSIVSVALLAVE------KVS--DISPLFFTGVLEAIAAALMMNIYIVGLNQLSDIEID 155 (289)
Q Consensus 84 ~~~~l~a~~~l~RPht~igt~l~vl~g~llA~~------~~~--~~~~~~~~~~l~~lva~l~~n~~~ngiNDyfD~EID 155 (289)
.++..+.-.++..|-+.+..+.-.....+.|.. ... ..+..++.++.+.+++......|..--|..||.+.|
T Consensus 7 f~~L~r~r~r~~~~l~~i~l~~y~~~~ll~a~~p~~m~~~v~~G~~t~g~~~g~~~~~~~~~l~~~Yv~~An~~~D~l~~ 86 (91)
T PF04341_consen 7 FQELVRRRRRLAWPLSAIFLVLYFGFVLLSAFAPELMATPVFPGSLTLGIVLGLGQIVFAWVLTWLYVRRANREFDPLAR 86 (91)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHcCcccCCCcCHHHHHHHHHHHHHHHHHHHHHHHHccccCHHHH
Confidence 344555556666666665443332222222211 111 355656777777777777778899999999998765
Q ss_pred c
Q 022970 156 K 156 (289)
Q Consensus 156 k 156 (289)
+
T Consensus 87 ~ 87 (91)
T PF04341_consen 87 A 87 (91)
T ss_pred H
Confidence 4
No 101
>PRK10581 geranyltranstransferase; Provisional
Probab=21.54 E-value=1.3e+02 Score=28.63 Aligned_cols=49 Identities=20% Similarity=0.363 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHhcCCChhhh-----------HhcCCccchhhhChHHHHHHHHHHHHHH
Q 022970 210 FMSFFSVVIALFKDVPDLEGD-----------KTFGIRTFTVRLGQKRVFWTCISLLEVA 258 (289)
Q Consensus 210 f~~~f~~~i~i~KDi~DieGD-----------r~~Gi~Tl~i~lG~k~a~~l~~~ll~~a 258 (289)
|..-+.++=.|..|+-|+.|| .+.|..|+|+.+|.+.+...+--...-|
T Consensus 211 ~g~~lG~aFQI~DDilD~~g~~~~~GK~~g~Dl~~gk~T~p~l~~~e~a~~~a~~~~~~A 270 (299)
T PRK10581 211 YAESIGLAFQVQDDILDVVGDTATLGKRQGADQQLGKSTYPALLGLEQARKKARDLIDDA 270 (299)
T ss_pred HHHHHHHHHHHHHHHccccCChHHHCCCcchhhhcCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 333344555699999998765 4679999999999998887665555443
No 102
>PRK08238 hypothetical protein; Validated
Probab=21.19 E-value=4e+02 Score=27.26 Aligned_cols=47 Identities=19% Similarity=0.160 Sum_probs=30.3
Q ss_pred HHHHHHHHhcCCChhhhHhcCC-ccchh---hhChHHHHHHHHHHHHHHHH
Q 022970 214 FSVVIALFKDVPDLEGDKTFGI-RTFTV---RLGQKRVFWTCISLLEVAYT 260 (289)
Q Consensus 214 f~~~i~i~KDi~DieGDr~~Gi-~Tl~i---~lG~k~a~~l~~~ll~~ay~ 260 (289)
.+-+..++||+-|.|=||++-. +.=|+ ++..+.+..++..++.++.+
T Consensus 238 ~~sa~~~~ND~~D~e~Dr~~~rk~~RPlasG~is~~~A~~~~~~l~~~~~~ 288 (479)
T PRK08238 238 CASAVYILNDLLDLEADRAHPRKRRRPFASGALPIPFGLAAAPLLLLAGLA 288 (479)
T ss_pred HHHHHHHHHhhHHhhhhccCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 3456779999999999999733 22343 34456666666555555443
Done!