Query 022970
Match_columns 289
No_of_seqs 185 out of 478
Neff 5.0
Searched_HMMs 29240
Date Mon Mar 25 14:10:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022970.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/022970hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3m0g_A Farnesyl diphosphate sy 33.3 49 0.0017 30.2 5.0 51 209-259 203-264 (297)
2 3lsn_A Geranyltranstransferase 29.5 43 0.0015 30.7 3.9 54 207-260 208-272 (304)
3 3ts7_A Geranyltranstransferase 28.1 42 0.0014 31.2 3.6 52 208-259 215-277 (324)
4 3kra_B Geranyl diphosphate syn 26.5 1E+02 0.0035 27.6 5.8 49 214-262 72-120 (274)
5 3lom_A Geranyltranstransferase 25.7 48 0.0016 30.6 3.5 52 208-259 216-278 (313)
6 3llw_A Geranyltranstransferase 25.1 57 0.002 30.0 3.9 46 214-259 222-276 (311)
7 1rqj_A Geranyltranstransferase 22.7 63 0.0022 29.3 3.7 51 210-260 211-272 (299)
8 2h8o_A Geranyltranstransferase 22.6 57 0.002 30.3 3.4 45 214-258 254-309 (335)
9 4f62_A Geranyltranstransferase 22.4 52 0.0018 30.4 3.1 53 207-259 207-270 (317)
10 3pde_A Farnesyl-diphosphate sy 22.0 65 0.0022 29.7 3.7 54 208-261 211-275 (309)
11 3p8r_A Geranyltranstransferase 21.7 57 0.0019 29.8 3.2 49 210-258 217-276 (302)
12 2j1p_A Geranylgeranyl pyrophos 21.6 57 0.002 29.5 3.2 42 213-257 224-265 (293)
13 3p8l_A Geranyltranstransferase 20.3 66 0.0023 29.4 3.3 47 213-259 217-274 (302)
No 1
>3m0g_A Farnesyl diphosphate synthase; structural genomics, protein structure initiative, NYSGXRC, biosynthesis, transferase, PSI-2; 1.90A {Rhodobacter capsulatus} PDB: 3lvs_A
Probab=33.28 E-value=49 Score=30.24 Aligned_cols=51 Identities=22% Similarity=0.267 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHhcCCChhhh-----------HhcCCccchhhhChHHHHHHHHHHHHHHH
Q 022970 209 AFMSFFSVVIALFKDVPDLEGD-----------KTFGIRTFTVRLGQKRVFWTCISLLEVAY 259 (289)
Q Consensus 209 ~f~~~f~~~i~i~KDi~DieGD-----------r~~Gi~Tl~i~lG~k~a~~l~~~ll~~ay 259 (289)
-|..-..++=.|..|+-|+.|| .+.|..|+|+.+|.+++...+--...-|.
T Consensus 203 ~~g~~lG~aFQI~DDilD~~~~~~~~GK~~g~Dl~~gK~T~p~l~~l~~a~~~~~~~~~~A~ 264 (297)
T 3m0g_A 203 AYATALGLAFQIADDILDVEGNEEAAGKRLGKDAEAHKATFVSLLGLAGAKSRAADLVAEAE 264 (297)
T ss_dssp HHHHHHHHHHHHHTTCC---------------------CCHHHHHCSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhccCCHHHhCCCccchhhcCCccHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455566799999999885 46789999999999998877666555444
No 2
>3lsn_A Geranyltranstransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; HET: MSE; 1.35A {Pseudomonas fluorescens} PDB: 3lji_A* 3p41_A*
Probab=29.53 E-value=43 Score=30.71 Aligned_cols=54 Identities=17% Similarity=0.196 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHHHHhcCCChhhh-----------HhcCCccchhhhChHHHHHHHHHHHHHHHH
Q 022970 207 ATAFMSFFSVVIALFKDVPDLEGD-----------KTFGIRTFTVRLGQKRVFWTCISLLEVAYT 260 (289)
Q Consensus 207 lt~f~~~f~~~i~i~KDi~DieGD-----------r~~Gi~Tl~i~lG~k~a~~l~~~ll~~ay~ 260 (289)
+.-|..-..++=.|..|+-|+.|| .+.|..|+|+.+|.+++...+--...-|.-
T Consensus 208 l~~~g~~lGlaFQI~DDilD~~~~~~~~GK~~g~Dl~egK~T~p~l~~l~~a~~~a~~~~~~A~~ 272 (304)
T 3lsn_A 208 LQTYAQAIGLAFQVQDDILDVESDTATLGKRQGADIARDKPTYPALLGLAAAKEYALELRDQALH 272 (304)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHC------------CCHHHHHCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhccCChHHhCCCcccHHhcCCccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444455666799999999885 467899999999999998877666555543
No 3
>3ts7_A Geranyltranstransferase; isoprenoid synthesis, farnesyl diphosphate synthase; 1.94A {Methylococcus capsulatus}
Probab=28.11 E-value=42 Score=31.17 Aligned_cols=52 Identities=15% Similarity=0.214 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHHHhcCCChhh-----------hHhcCCccchhhhChHHHHHHHHHHHHHHH
Q 022970 208 TAFMSFFSVVIALFKDVPDLEG-----------DKTFGIRTFTVRLGQKRVFWTCISLLEVAY 259 (289)
Q Consensus 208 t~f~~~f~~~i~i~KDi~DieG-----------Dr~~Gi~Tl~i~lG~k~a~~l~~~ll~~ay 259 (289)
.-|..-..++=.|..|+-|+.| |.+.|..|+|+.+|.+++...+--...-|.
T Consensus 215 ~~~g~~lGlAFQI~DDiLD~~~d~~~~GK~~g~Dl~egK~T~p~l~gle~a~~~a~~~~~~A~ 277 (324)
T 3ts7_A 215 DHYAKCIGLAFQIQDDILDEESDTQTLGKTRGKDRDHNKPNYPALLGLSGAKEKAEEMHEAAL 277 (324)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCC---------------CCCHHHHHCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhccCCHHHhCCCccchhhcCCccHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444555669999999877 456899999999999999887766655544
No 4
>3kra_B Geranyl diphosphate synthase small subunit; prenyltransferase, isoprene biosynthesis, isoprenyl pyrophosphate synthase, transferase; 1.90A {Mentha x piperita} PDB: 3krc_B* 3krf_B* 3kro_B* 3krp_B* 3oab_B* 3oac_B*
Probab=26.52 E-value=1e+02 Score=27.65 Aligned_cols=49 Identities=8% Similarity=0.198 Sum_probs=38.2
Q ss_pred HHHHHHHHhcCCChhhhHhcCCccchhhhChHHHHHHHHHHHHHHHHHH
Q 022970 214 FSVVIALFKDVPDLEGDKTFGIRTFTVRLGQKRVFWTCISLLEVAYTVA 262 (289)
Q Consensus 214 f~~~i~i~KDi~DieGDr~~Gi~Tl~i~lG~k~a~~l~~~ll~~ay~~~ 262 (289)
.-.+--|-.|+++.+.|.+.|.-|.=.++|...+...+-.++..++-..
T Consensus 72 iH~aSLIHDDI~~dD~d~RRG~pt~h~~~G~~~AIlaGD~Ll~~Af~~l 120 (274)
T 3kra_B 72 VHAAAYVHEHLPLTDGSRPVSKPAIQHKYGPNVELLTGDGIVPFGFELL 120 (274)
T ss_dssp HHHHHHHHHTCCCSSSSSCCCSSCCCCSSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCcccCCccCCCCCCchhhcChHHHHHHHHHHHHHHHHHH
Confidence 3345557899996666778999999999999988888877877776543
No 5
>3lom_A Geranyltranstransferase; geranyltransferase, structural genomics, PSI, protein structure initiative, nysgrc; 2.30A {Legionella pneumophila subsp}
Probab=25.66 E-value=48 Score=30.56 Aligned_cols=52 Identities=13% Similarity=0.152 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHHHhcCCChhhh-----------HhcCCccchhhhChHHHHHHHHHHHHHHH
Q 022970 208 TAFMSFFSVVIALFKDVPDLEGD-----------KTFGIRTFTVRLGQKRVFWTCISLLEVAY 259 (289)
Q Consensus 208 t~f~~~f~~~i~i~KDi~DieGD-----------r~~Gi~Tl~i~lG~k~a~~l~~~ll~~ay 259 (289)
.-|..-..++=.|..|+-|+.|| .+.|..|+|+.+|.+++...+--...-|.
T Consensus 216 ~~~g~~lGlaFQI~DDilD~~gd~~~~GK~~g~Dl~~gK~T~p~l~~l~~a~~~a~~~~~~A~ 278 (313)
T 3lom_A 216 RTYGKHIGLVFQMQDDYLDLYAPTQILGKGRSSDQANQKTTFATLFNKQQLEEEIAVHYQIAM 278 (313)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCC---------------CCCHHHHSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhccCCHHhhCCCCcchhhcCCccHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444445566699999998875 46899999999999998877765555443
No 6
>3llw_A Geranyltranstransferase (ISPA); structural genomics, PSI, protein structure initiative, nysgrc; 2.30A {Helicobacter pylori} PDB: 3q1o_A*
Probab=25.12 E-value=57 Score=30.00 Aligned_cols=46 Identities=17% Similarity=0.233 Sum_probs=32.7
Q ss_pred HHHHHHHHhcCCChhhhH---------hcCCccchhhhChHHHHHHHHHHHHHHH
Q 022970 214 FSVVIALFKDVPDLEGDK---------TFGIRTFTVRLGQKRVFWTCISLLEVAY 259 (289)
Q Consensus 214 f~~~i~i~KDi~DieGDr---------~~Gi~Tl~i~lG~k~a~~l~~~ll~~ay 259 (289)
..++=.|..|+-|+.||. +.|..|+|+.+|.+++-...--++.-|.
T Consensus 222 lGlaFQI~DDiLD~~gd~~~~GK~~g~~~gK~T~p~l~~l~~a~~~~~~~~~~a~ 276 (311)
T 3llw_A 222 MGLCFQVLDDIIDVTQDEEESGKTTHLDSAKNSFVNLLGLERANNYAQTLKTEVL 276 (311)
T ss_dssp HHHHHHHHHHHHHHHC-------------CCSCHHHHHCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCChHHHCcccccccCcchHHHHHHHHHHHHHHHHHHHHHH
Confidence 444556999999998875 5799999999999998776665554443
No 7
>1rqj_A Geranyltranstransferase; bisphosphonate, isoprenyl synthase; HET: IPR RIS; 1.95A {Escherichia coli} SCOP: a.128.1.1 PDB: 1rqi_A* 2for_A*
Probab=22.66 E-value=63 Score=29.30 Aligned_cols=51 Identities=20% Similarity=0.328 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHhcCCChhhhH-----------hcCCccchhhhChHHHHHHHHHHHHHHHH
Q 022970 210 FMSFFSVVIALFKDVPDLEGDK-----------TFGIRTFTVRLGQKRVFWTCISLLEVAYT 260 (289)
Q Consensus 210 f~~~f~~~i~i~KDi~DieGDr-----------~~Gi~Tl~i~lG~k~a~~l~~~ll~~ay~ 260 (289)
|..-..++-.|..|+-|+.||. +.|..|+|+.+|.+++...+--...-|.-
T Consensus 211 ~g~~lG~aFQi~DD~lD~~~~~~~~GK~~g~Dl~~gK~T~p~l~~l~~a~~~~~~~~~~A~~ 272 (299)
T 1rqj_A 211 YAESIGLAFQVQDDILDVVGDTATLGKRQGADQQLGKSTYPALLGLEQARKKARDLIDDARQ 272 (299)
T ss_dssp HHHHHHHHHHHHHHHHHHHSCHHHHSSCTTHHHHHTCCCHHHHHCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhccCCHHHhCCChhhHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333445556899999988764 56899999999999887766655554443
No 8
>2h8o_A Geranyltranstransferase; geranyltransferase,agrobacterium tumefaciens, structural GEN PSI-2, protein structure initiative; 1.60A {Agrobacterium tumefaciens}
Probab=22.61 E-value=57 Score=30.32 Aligned_cols=45 Identities=20% Similarity=0.153 Sum_probs=29.6
Q ss_pred HHHHHHHHhcCCChhhh-----------HhcCCccchhhhChHHHHHHHHHHHHHH
Q 022970 214 FSVVIALFKDVPDLEGD-----------KTFGIRTFTVRLGQKRVFWTCISLLEVA 258 (289)
Q Consensus 214 f~~~i~i~KDi~DieGD-----------r~~Gi~Tl~i~lG~k~a~~l~~~ll~~a 258 (289)
..++-.|..|+-|+.|| .+.|..|+|+.+|.+++...+--...-|
T Consensus 254 lGlAFQI~DDiLD~~gd~~~~GK~~g~Dl~egK~T~p~l~~le~a~~~a~~~~~~A 309 (335)
T 2h8o_A 254 IGLSFQLADDLLDLTADAATMGKATGKDAARGKGTLVALRGEAWAREKLQEQVAEA 309 (335)
T ss_dssp HHHHHHHHHHHHHHC-----------------CCCHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCHHHhCCCcchHHhcCCccHHHHHHHHHHHHHHHHHHHHH
Confidence 34455699999998775 4578999999999888777665554443
No 9
>4f62_A Geranyltranstransferase; enzyme function initiative, structural genomics; 2.10A {Marinomonas SP}
Probab=22.42 E-value=52 Score=30.43 Aligned_cols=53 Identities=21% Similarity=0.214 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHHHHhcCCChhhh-----------HhcCCccchhhhChHHHHHHHHHHHHHHH
Q 022970 207 ATAFMSFFSVVIALFKDVPDLEGD-----------KTFGIRTFTVRLGQKRVFWTCISLLEVAY 259 (289)
Q Consensus 207 lt~f~~~f~~~i~i~KDi~DieGD-----------r~~Gi~Tl~i~lG~k~a~~l~~~ll~~ay 259 (289)
+.-|..-..++=.|..|+-|+.|| .+.|..|+|+.+|.+++...+--...-|-
T Consensus 207 l~~~g~~lGlAFQI~DDiLD~~gd~~~~GK~~g~Dl~egK~T~p~l~gle~a~~~a~~~~~~A~ 270 (317)
T 4f62_A 207 LDAYAHAIGLAFQVQDDIIDLTSDTETLGKTQFSDAEANKATYPKLLGLDGAKALVVRLHEQAI 270 (317)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTC----------------CCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhccCChHhhCCCcchHHhcCCCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444455566699999998775 46799999999999998887766554443
No 10
>3pde_A Farnesyl-diphosphate synthase; isoprenyl diphosphate synthase, structural genomics, PSI, PR structure initiative; HET: IPE; 1.75A {Lactobacillus brevis} PDB: 3m9u_A*
Probab=22.03 E-value=65 Score=29.65 Aligned_cols=54 Identities=17% Similarity=0.263 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHHHHhcCCChhh-----------hHhcCCccchhhhChHHHHHHHHHHHHHHHHH
Q 022970 208 TAFMSFFSVVIALFKDVPDLEG-----------DKTFGIRTFTVRLGQKRVFWTCISLLEVAYTV 261 (289)
Q Consensus 208 t~f~~~f~~~i~i~KDi~DieG-----------Dr~~Gi~Tl~i~lG~k~a~~l~~~ll~~ay~~ 261 (289)
.-|..-..++=.|..|+-|+.| |.+.|..|+|+.+|-+++-...--++.-|+-.
T Consensus 211 ~~~g~~lGlaFQI~DDiLD~~gd~~~~GK~~g~Dl~egK~T~p~l~al~~a~~~~~~~~~~a~~~ 275 (309)
T 3pde_A 211 LQFADAFGLAFQIYDDILDVVSSPAEMGKATQKDADEAKNTYPGKLGLIGANQALIDTIHSGQAA 275 (309)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCC-----------CTTTSSSHHHHHCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhccCCHHHhCCCccchhhcCCccHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 3344445556669999999876 55778999999999999888777666666544
No 11
>3p8r_A Geranyltranstransferase; isoprenyl synthase, structural genomics, PSI, protein struct initiative, nysgrc; 2.50A {Vibrio cholerae} SCOP: a.128.1.1
Probab=21.69 E-value=57 Score=29.84 Aligned_cols=49 Identities=18% Similarity=0.286 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHhcCCChhhh-----------HhcCCccchhhhChHHHHHHHHHHHHHH
Q 022970 210 FMSFFSVVIALFKDVPDLEGD-----------KTFGIRTFTVRLGQKRVFWTCISLLEVA 258 (289)
Q Consensus 210 f~~~f~~~i~i~KDi~DieGD-----------r~~Gi~Tl~i~lG~k~a~~l~~~ll~~a 258 (289)
|..-..++=.|..|+-|+.|| .+.|..|+|+.+|.+++...+--...-|
T Consensus 217 ~g~~lG~aFQI~DDilD~~~~~~~~GK~~g~Dl~egK~T~p~l~~l~~a~~~a~~~~~~A 276 (302)
T 3p8r_A 217 YAEAVGLAFQVQDDILDIISDTETLGKPQGSDQELNKSTYPALLGLEGAQQKAHTLLQEA 276 (302)
T ss_dssp HHHHHHHHHHHHHHHHHHTTC---------------CCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhccCCHHHhCCCcchHHhcCCchHHHHHHHHHHHHHHHHHHHHH
Confidence 333344555689999888775 4679999999999998887776555444
No 12
>2j1p_A Geranylgeranyl pyrophosphate synthetase; transferase, isoprene biosynthesis, multifunctional enzyme, carotenoid biosynthesis; HET: GRG; 1.8A {Sinapis alba} PDB: 2j1o_A 3kra_A 3krc_A* 3krf_A* 3kro_A* 3krp_A* 3oab_A* 3oac_A*
Probab=21.57 E-value=57 Score=29.54 Aligned_cols=42 Identities=12% Similarity=0.131 Sum_probs=31.3
Q ss_pred HHHHHHHHHhcCCChhhhHhcCCccchhhhChHHHHHHHHHHHHH
Q 022970 213 FFSVVIALFKDVPDLEGDKTFGIRTFTVRLGQKRVFWTCISLLEV 257 (289)
Q Consensus 213 ~f~~~i~i~KDi~DieGDr~~Gi~Tl~i~lG~k~a~~l~~~ll~~ 257 (289)
-..++=.|..|+-|+.||. ..|+|+.+|.+++...+--...-
T Consensus 224 ~lG~aFQI~DDiLD~~~~~---K~T~p~l~gle~a~~~a~~~~~~ 265 (293)
T 2j1p_A 224 CIGLLFQVVDDILDVTKSS---KLTYPKLMGLEKSREFAEKLNTE 265 (293)
T ss_dssp HHHHHHHHHHHHHHHHC-----CCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccCCc---cccHHHHHHHHHHHHHHHHHHHH
Confidence 3445556999999999998 78999999999888776655433
No 13
>3p8l_A Geranyltranstransferase; isoprenyl synthase, structural genomics, PSI, protein struct initiative, nysgrc; 2.00A {Enterococcus faecalis}
Probab=20.32 E-value=66 Score=29.45 Aligned_cols=47 Identities=15% Similarity=0.177 Sum_probs=31.3
Q ss_pred HHHHHHHHHhcCCChhh-----------hHhcCCccchhhhChHHHHHHHHHHHHHHH
Q 022970 213 FFSVVIALFKDVPDLEG-----------DKTFGIRTFTVRLGQKRVFWTCISLLEVAY 259 (289)
Q Consensus 213 ~f~~~i~i~KDi~DieG-----------Dr~~Gi~Tl~i~lG~k~a~~l~~~ll~~ay 259 (289)
-..++-.|..|+-|+.| |.+.|..|+|+.+|.+++...+--...-|.
T Consensus 217 ~lGlaFQI~DDilD~~~d~~~~GK~~g~Dl~egK~T~p~l~~l~~a~~~~~~~~~~A~ 274 (302)
T 3p8l_A 217 HYGLAFQIRDDLLDATSTEADLGKKVGRDEALNKSTYPALLGIAGAKDALTHQLAEGS 274 (302)
T ss_dssp HHHHHHHHHHHHHHTTC-----------------CCHHHHHCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCCHHHhCCChhhHHhcCCCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455568999988866 467799999999999999887766655444
Done!