Query 022970
Match_columns 289
No_of_seqs 185 out of 478
Neff 5.0
Searched_HMMs 13730
Date Mon Mar 25 14:10:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022970.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/022970hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1rqja_ a.128.1.1 (A:) Farnesy 33.8 27 0.002 29.3 5.5 50 214-263 76-126 (299)
2 d1rtra_ a.128.1.1 (A:) Farnesy 24.6 47 0.0034 27.6 5.4 50 213-262 72-122 (290)
3 d1rtra_ a.128.1.1 (A:) Farnesy 21.3 13 0.00092 31.4 0.9 36 216-251 211-257 (290)
4 d1rqja_ a.128.1.1 (A:) Farnesy 19.3 19 0.0014 30.3 1.6 39 214-252 215-264 (299)
5 d2c9wa1 a.271.1.1 (A:149-198) 15.4 25 0.0018 22.8 1.1 19 146-165 23-42 (50)
6 d1v4ea_ a.128.1.1 (A:) Octopre 8.8 2.4E+02 0.018 22.7 5.7 46 215-261 66-111 (280)
7 d1wvia_ c.108.1.14 (A:) Putati 6.9 72 0.0053 24.9 1.2 25 220-244 202-228 (253)
8 d1fpsa_ a.128.1.1 (A:) Farnesy 6.6 41 0.003 28.7 -0.5 37 210-246 226-272 (348)
9 d1uf2a_ e.28.1.2 (A:) RDV p3 { 6.5 81 0.0059 30.3 1.4 26 127-156 550-575 (967)
10 d1nuba2 g.3.11.3 (A:53-77) Dom 5.9 67 0.0049 17.8 0.3 9 34-42 2-10 (26)
No 1
>d1rqja_ a.128.1.1 (A:) Farnesyl diphosphate synthase (geranyltranstransferase) {Escherichia coli [TaxId: 562]}
Probab=33.78 E-value=27 Score=29.29 Aligned_cols=50 Identities=18% Similarity=0.363 Sum_probs=40.5
Q ss_pred HHHHHHHHhcCCChhh-hHhcCCccchhhhChHHHHHHHHHHHHHHHHHHH
Q 022970 214 FSVVIALFKDVPDLEG-DKTFGIRTFTVRLGQKRVFWTCISLLEVAYTVAI 263 (289)
Q Consensus 214 f~~~i~i~KDi~DieG-Dr~~Gi~Tl~i~lG~k~a~~l~~~ll~~ay~~~i 263 (289)
+-.+--+-.|++|.+. |.+.|..|.-.++|...+...+-.++..++-...
T Consensus 76 lH~asLiHDDI~d~d~~~~RRG~pt~h~~~G~~~AIl~Gd~l~~~a~~~l~ 126 (299)
T d1rqja_ 76 IHAYSLIHDDLPAMDDDDLRRGLPTCHVKFGEANAILAGDALQTLAFSILS 126 (299)
T ss_dssp HHHHHHHHHTSTTTTCCCEETTEECHHHHHCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHccchhhhhhhcccccccceeeeCcchhhhhcchHHHHHHHHHH
Confidence 3345557889999987 4799999999999999998888888777776654
No 2
>d1rtra_ a.128.1.1 (A:) Farnesyl diphosphate synthase (geranyltranstransferase) {Staphylococcus aureus [TaxId: 1280]}
Probab=24.58 E-value=47 Score=27.55 Aligned_cols=50 Identities=18% Similarity=0.226 Sum_probs=39.5
Q ss_pred HHHHHHHHHhcCCChhhh-HhcCCccchhhhChHHHHHHHHHHHHHHHHHH
Q 022970 213 FFSVVIALFKDVPDLEGD-KTFGIRTFTVRLGQKRVFWTCISLLEVAYTVA 262 (289)
Q Consensus 213 ~f~~~i~i~KDi~DieGD-r~~Gi~Tl~i~lG~k~a~~l~~~ll~~ay~~~ 262 (289)
++-.+--+-.||+|+++| .+.|..|.-.++|...+...+-.++..++...
T Consensus 72 llH~asLIHDDI~d~D~~~~RRg~pt~~~~~g~~~Ail~Gd~l~~~a~~l~ 122 (290)
T d1rtra_ 72 MIHTYSLIHDDLPAMDNDDYRRGKLTNHKVYGEWTAILAGDALLTKAFELI 122 (290)
T ss_dssp HHHHHHHHHHHSTTTTCCSEETTEECHHHHHCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcchhhhhhhhhhhcchhhHHHhhhhHHHHcCcchhHHHHHHH
Confidence 344455688999999776 58899999999999999888887777766543
No 3
>d1rtra_ a.128.1.1 (A:) Farnesyl diphosphate synthase (geranyltranstransferase) {Staphylococcus aureus [TaxId: 1280]}
Probab=21.32 E-value=13 Score=31.36 Aligned_cols=36 Identities=19% Similarity=0.172 Sum_probs=23.3
Q ss_pred HHHHHHhcCCChhh-----------hHhcCCccchhhhChHHHHHHH
Q 022970 216 VVIALFKDVPDLEG-----------DKTFGIRTFTVRLGQKRVFWTC 251 (289)
Q Consensus 216 ~~i~i~KDi~DieG-----------Dr~~Gi~Tl~i~lG~k~a~~l~ 251 (289)
++=.|..|+.|+.| |.+.|..|+|+.+|.+++....
T Consensus 211 ~aFQi~DD~lD~~g~~~~~GK~~g~Di~~gK~T~p~i~a~~~a~~~~ 257 (290)
T d1rtra_ 211 MMFQIKDDLLDCYGDEAKLGKKVGSDLENNKSTYVSLLGKDGAEDKL 257 (290)
T ss_dssp HHHHHHHHHHHHHHHHCC-------------CCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcchHhhccCcccHhhcCCccHHHHHHHHHHHHHH
Confidence 34458999998876 4467899999999988875543
No 4
>d1rqja_ a.128.1.1 (A:) Farnesyl diphosphate synthase (geranyltranstransferase) {Escherichia coli [TaxId: 562]}
Probab=19.31 E-value=19 Score=30.33 Aligned_cols=39 Identities=21% Similarity=0.359 Sum_probs=29.3
Q ss_pred HHHHHHHHhcCCChhh-----------hHhcCCccchhhhChHHHHHHHH
Q 022970 214 FSVVIALFKDVPDLEG-----------DKTFGIRTFTVRLGQKRVFWTCI 252 (289)
Q Consensus 214 f~~~i~i~KDi~DieG-----------Dr~~Gi~Tl~i~lG~k~a~~l~~ 252 (289)
+.++=.|..|+.|+.| |.+.|..|+|+.+|.+++-...-
T Consensus 215 lGiaFQi~DD~lD~~~~~~~~GK~~g~Dl~egK~Tlp~i~~le~a~~~~~ 264 (299)
T d1rqja_ 215 IGLAFQVQDDILDVVGDTATLGKRQGADQQLGKSTYPALLGLEQARKKAR 264 (299)
T ss_dssp HHHHHHHHHHHHHHHSCHHHHSSCTTHHHHHTCCCHHHHHCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhccchhhcCCchhhHHHCCChhHHHHHHHHHHHHHHH
Confidence 3344458899988875 66678999999999988765443
No 5
>d2c9wa1 a.271.1.1 (A:149-198) Suppressor of cytokine signaling 2, SOCS-2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=15.42 E-value=25 Score=22.77 Aligned_cols=19 Identities=32% Similarity=0.455 Sum_probs=13.0
Q ss_pred hhhhhhhhccccc-chhhhHh
Q 022970 146 LNQLSDIEIDKLP-LLRWKRF 165 (289)
Q Consensus 146 iNDyfD~EIDklP-plRlKr~ 165 (289)
||.-+| .||++| |-++|.+
T Consensus 23 In~~~d-~i~~LPLP~~Lk~Y 42 (50)
T d2c9wa1 23 INKCTG-AIWGLPLPTRLKDY 42 (50)
T ss_dssp HHHHCS-CGGGSSSCHHHHHH
T ss_pred HHhccC-CcccCCCCHHHHHH
Confidence 677777 899976 4556654
No 6
>d1v4ea_ a.128.1.1 (A:) Octoprenyl-diphosphate synthase {Thermotoga maritima [TaxId: 2336]}
Probab=8.76 E-value=2.4e+02 Score=22.73 Aligned_cols=46 Identities=22% Similarity=0.167 Sum_probs=35.9
Q ss_pred HHHHHHHhcCCChhhhHhcCCccchhhhChHHHHHHHHHHHHHHHHH
Q 022970 215 SVVIALFKDVPDLEGDKTFGIRTFTVRLGQKRVFWTCISLLEVAYTV 261 (289)
Q Consensus 215 ~~~i~i~KDi~DieGDr~~Gi~Tl~i~lG~k~a~~l~~~ll~~ay~~ 261 (289)
-.+--|-.|+.| +.|.+.|..|.=.++|...+...+-.++..++-.
T Consensus 66 H~asLIhDDi~D-~s~~RRG~pt~h~~~g~~~ail~gd~l~~~a~~~ 111 (280)
T d1v4ea_ 66 HLASLLHDDVID-GARFRRGKETINFMYGDKAAVAAGDLVLVSAFHT 111 (280)
T ss_dssp HHHHHHHHHHHH-TCSEETTEECHHHHHCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhHhh-hcccccccchhhhccchhhhhhhHHHHHHhhhhc
Confidence 344457799988 6788999999999999998888777776665543
No 7
>d1wvia_ c.108.1.14 (A:) Putative phosphatase SMU.1415c {Streptococcus mutans [TaxId: 1309]}
Probab=6.85 E-value=72 Score=24.86 Aligned_cols=25 Identities=24% Similarity=0.250 Sum_probs=21.0
Q ss_pred HHhc-CC-ChhhhHhcCCccchhhhCh
Q 022970 220 LFKD-VP-DLEGDKTFGIRTFTVRLGQ 244 (289)
Q Consensus 220 i~KD-i~-DieGDr~~Gi~Tl~i~lG~ 244 (289)
++-| ++ ||+|=++.|++|+-|.-|.
T Consensus 202 mIGDs~~~DI~gA~~aG~~si~V~~G~ 228 (253)
T d1wvia_ 202 MVGDNYLTDITAGIKNDIATLLVTTGF 228 (253)
T ss_dssp EEESCTTTTHHHHHHTTCEEEEESSSS
T ss_pred EEcCChHHHHHHHHHCCCCEEEECCCC
Confidence 4556 67 9999999999999998774
No 8
>d1fpsa_ a.128.1.1 (A:) Farnesyl diphosphate synthase (geranyltranstransferase) {Chicken (Gallus gallus) [TaxId: 9031]}
Probab=6.65 E-value=41 Score=28.66 Aligned_cols=37 Identities=16% Similarity=0.055 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhcCCChhh----------hHhcCCccchhhhChHH
Q 022970 210 FMSFFSVVIALFKDVPDLEG----------DKTFGIRTFTVRLGQKR 246 (289)
Q Consensus 210 f~~~f~~~i~i~KDi~DieG----------Dr~~Gi~Tl~i~lG~k~ 246 (289)
|..-+.++=.|..|+-|+.| |-+.|..|+|+.+.-++
T Consensus 226 ~g~~lGiaFQI~DDilD~~gd~~~~GK~g~Dl~egK~Tlpii~al~~ 272 (348)
T d1fpsa_ 226 ILLEMGEYFQIQDDYLDCFGDPALTGKVGTDIQDNKCSWLVVQCLQR 272 (348)
T ss_dssp HHHHHHHHHHHHHHHHHHSCCSSCCSSCSCCCSSCCCCHHHHHHHHT
T ss_pred cccccchHHHHHHHHhhhhcchhccCcccccccCCccHHHHHHHHHh
No 9
>d1uf2a_ e.28.1.2 (A:) RDV p3 {Rice dwarf virus [TaxId: 10991]}
Probab=6.46 E-value=81 Score=30.25 Aligned_cols=26 Identities=31% Similarity=0.370 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhhhccc
Q 022970 127 TGVLEAIAAALMMNIYIVGLNQLSDIEIDK 156 (289)
Q Consensus 127 ~~~l~~lva~l~~n~~~ngiNDyfD~EIDk 156 (289)
.+.+.+++ .|.|.|++|-|+|-+--.
T Consensus 550 ~gIyEavL----aNtYaNAvNvYCDsvYra 575 (967)
T d1uf2a_ 550 LGIYEAIL----ANTYANAVNVYCDSVYRA 575 (967)
T ss_dssp HHHHHHHH----TTHHHHHSBSSCCCCCCT
T ss_pred HHHHHHHH----HHhhhhhhhhhccccccC
Confidence 35455544 599999999999987555
No 10
>d1nuba2 g.3.11.3 (A:53-77) Domain of BM-40/SPARC/osteonectin {Human (Homo sapiens) [TaxId: 9606]}
Probab=5.88 E-value=67 Score=17.78 Aligned_cols=9 Identities=22% Similarity=0.261 Sum_probs=6.3
Q ss_pred ccccchhcc
Q 022970 34 YHLKHHIRG 42 (289)
Q Consensus 34 ~~~~~~~~~ 42 (289)
|-++||+|+
T Consensus 2 pclnhhck~ 10 (26)
T d1nuba2 2 PCQNHHCKH 10 (26)
T ss_dssp TTTTCCCCT
T ss_pred ccccccccc
Confidence 557888765
Done!