Query 022971
Match_columns 289
No_of_seqs 166 out of 353
Neff 5.6
Searched_HMMs 46136
Date Fri Mar 29 07:30:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022971.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/022971hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF14299 PP2: Phloem protein 2 100.0 2.8E-61 6E-66 414.1 19.6 148 114-275 1-154 (154)
2 PF12937 F-box-like: F-box-lik 98.5 3.6E-08 7.8E-13 68.0 2.2 44 22-65 1-44 (47)
3 PF00646 F-box: F-box domain; 98.2 3.1E-07 6.7E-12 63.0 -0.4 45 21-65 2-46 (48)
4 smart00256 FBOX A Receptor for 98.2 1.7E-06 3.6E-11 56.8 3.1 40 25-64 1-40 (41)
5 PF06881 Elongin_A: RNA polyme 92.5 0.099 2.2E-06 42.4 2.6 71 21-95 3-73 (109)
6 KOG3926 F-box proteins [Amino 85.5 0.64 1.4E-05 44.3 2.6 79 17-95 197-278 (332)
7 KOG2997 F-box protein FBX9 [Ge 78.7 0.72 1.6E-05 44.8 0.3 80 21-102 106-194 (366)
8 PLN03215 ascorbic acid mannose 78.2 1.8 4E-05 42.7 3.0 38 22-59 4-42 (373)
9 KOG0274 Cdc4 and related F-box 70.2 1.8 3.9E-05 44.6 0.7 51 19-69 105-155 (537)
10 PF02018 CBM_4_9: Carbohydrate 62.1 73 0.0016 24.7 10.8 64 169-254 60-125 (131)
11 KOG4408 Putative Mg2+ and Co2+ 52.8 4.3 9.3E-05 39.8 -0.2 51 19-69 5-55 (386)
12 KOG3233 RNA polymerase III, su 51.7 3.7 8.1E-05 39.1 -0.8 43 111-161 137-183 (297)
13 PF13013 F-box-like_2: F-box-l 51.6 15 0.00032 30.3 2.8 46 18-66 18-63 (109)
14 KOG4114 Cytochrome c oxidase a 48.8 10 0.00022 28.9 1.3 33 19-55 35-69 (73)
15 KOG2120 SCF ubiquitin ligase, 47.2 22 0.00047 35.0 3.6 48 18-65 94-141 (419)
16 KOG2944 Glyoxalase [Carbohydra 29.7 72 0.0016 28.3 3.8 77 158-235 84-167 (170)
No 1
>PF14299 PP2: Phloem protein 2
Probab=100.00 E-value=2.8e-61 Score=414.05 Aligned_cols=148 Identities=36% Similarity=0.709 Sum_probs=137.0
Q ss_pred CceEEEEeeccceeecCCCCCceeeeeccccccccceeEeeeeEEEEeeEEeeec--CCceeEEEEEEEeccccccccce
Q 022971 114 GKVCMSISAKSMKITGIDDRRYWNQIATEESRFHSVAYLQQTWWCEAIGELEFEF--PQGTYSLFFRLQLGKASKRFGRR 191 (289)
Q Consensus 114 GkkCymLsAR~L~ItWgdd~~YW~Wis~peSRF~EVAeL~~VcWLEI~Gki~t~l--p~t~Y~ay~v~kl~~~~~~~~~~ 191 (289)
||||||||||+|+|+|||||+||+|+++|+|||.|||||++||||||+|+|++++ |+|+|+||||||++
T Consensus 1 G~~cymlsaR~L~I~Wg~~~~yW~w~~~~~srf~evAeL~~V~WLeI~G~i~~~~Lsp~t~Y~vy~v~kl~--------- 71 (154)
T PF14299_consen 1 GKKCYMLSARALSITWGDDPRYWKWIPLPDSRFSEVAELLQVCWLEIRGKINTRMLSPGTTYAVYFVFKLK--------- 71 (154)
T ss_pred CCEEEEEEhhhCEEecCCCCcceeeccCCcccceeeeEEEEEEEEEEEEEEEceEcCCCCEEEEEEEEEec---------
Confidence 8999999999999999999999999999999999999999999999999999995 99999999999994
Q ss_pred eecccccccccccceEEEEEecCCce--eeeeeec--cCCCCEEEEEeeeEEecCCCCccEEEEEEEEeeCCCccccEEE
Q 022971 192 ICNLEQVHGWDVKPVRFQLSTSNGQK--AVSECCL--YDPGNWVLYHVGDFAVENDQTSTKIKFSMMQIDCTHTKGGLCI 267 (289)
Q Consensus 192 ~~~~~~~~Gw~~~pv~~~l~~~~g~~--~~~~~~l--~~~DGWmEielGEF~~~~~~~~~eV~fsl~E~~~~~wK~GLiV 267 (289)
+++|||+..|++++++.++++. ..+.+.+ .+.|||||||+|||+|+++ +++||+|+|+|+++++||+||||
T Consensus 72 ----~~~~Gw~~~pv~~~v~~~~~~~~~~~~~~~~~~~r~dgW~Eie~GeF~~~~~-~~~ev~f~~~E~~~~~wK~GLiv 146 (154)
T PF14299_consen 72 ----DDAYGWDSPPVEFSVKVPDGEKYEQERKVCLPKERGDGWMEIELGEFFNEGG-DDGEVEFSMYEVDSGHWKGGLIV 146 (154)
T ss_pred ----CCCCCCCcCCEEEEEEeCCCccccceeeEEcCCCCCCCEEEEEcceEEecCC-CCcEEEEEEEEecCCcccCeEEE
Confidence 7899999999999999998876 2233333 3579999999999999875 78999999999999999999999
Q ss_pred EEEEEEec
Q 022971 268 DSVLIYPS 275 (289)
Q Consensus 268 ~GIeIRPk 275 (289)
+|||||||
T Consensus 147 ~GieIRPK 154 (154)
T PF14299_consen 147 EGIEIRPK 154 (154)
T ss_pred EEEEEecC
Confidence 99999998
No 2
>PF12937 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 2OVQ_B 1FS1_A 1FS2_C 1FQV_I 1LDK_E 2AST_B 2ASS_B.
Probab=98.55 E-value=3.6e-08 Score=68.01 Aligned_cols=44 Identities=25% Similarity=0.609 Sum_probs=39.8
Q ss_pred CCCchhHHHHHHHhcCChHHHHHHhhcchhhhccCCCchhhccc
Q 022971 22 LNDVPESCVSSIFMHLDPPEICKLALLNKTFRGASSADFLWETK 65 (289)
Q Consensus 22 ~~~LPe~cia~ils~tsP~dacr~a~vs~~fr~Aa~sD~vW~~f 65 (289)
+.+||+|.+..|+++++|.|.++++.||+.|+.++.++.+|.++
T Consensus 1 i~~LP~Eil~~If~~L~~~dl~~~~~vcr~w~~~~~~~~lW~~~ 44 (47)
T PF12937_consen 1 ISSLPDEILLEIFSYLDPRDLLRLSLVCRRWRRIANDNSLWRRL 44 (47)
T ss_dssp CCCS-HHHHHHHHTTS-HHHHHHHTTSSHHHHHHHTCCCHHHHH
T ss_pred ChHhHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHCChhhhhhh
Confidence 57899999999999999999999999999999999999999875
No 3
>PF00646 F-box: F-box domain; InterPro: IPR001810 The F-box domain was first described as a sequence motif found in cyclin-F that interacts with the protein SKP1 [, ]. This relatively conserved structural motif is present in numerous proteins and serves as a link between a target protein and a ubiquitin-conjugating enzyme. The SCF complex (e.g., Skp1-Cullin-F-box) plays a similar role as an E3 ligase in the ubiquitin protein degradation pathway [, ]. Different F-box proteins as a part of SCF complex recruit particular substrates for ubiquitination through specific protein-protein interaction domains. Many mammalian F-box domains contain leucine-rich or WD-40 repeats (IPR001680 from INTERPRO). However, several F-box proteins either have other previously described domains such as Sec7 domain found in FBS protein or do not contain defined protein-protein interaction domains or motifs.; GO: 0005515 protein binding; PDB: 2E32_A 2E31_A 3V7D_B 1NEX_B 3MKS_D 3L2O_B.
Probab=98.17 E-value=3.1e-07 Score=63.03 Aligned_cols=45 Identities=29% Similarity=0.627 Sum_probs=39.0
Q ss_pred CCCCchhHHHHHHHhcCChHHHHHHhhcchhhhccCCCchhhccc
Q 022971 21 SLNDVPESCVSSIFMHLDPPEICKLALLNKTFRGASSADFLWETK 65 (289)
Q Consensus 21 ~~~~LPe~cia~ils~tsP~dacr~a~vs~~fr~Aa~sD~vW~~f 65 (289)
.|.+||++++..|++++++.|.++++.||+.|+.+++++..|.++
T Consensus 2 ~~~~LP~~il~~Il~~l~~~~~~~l~~vsk~~~~~~~~~~~~~~~ 46 (48)
T PF00646_consen 2 PLSDLPDEILQEILSYLDPKDLLRLSLVSKRWRSLVDSPRLWKKI 46 (48)
T ss_dssp HHHHS-HHHHHHHHHTS-HHHHHHHCTT-HHHHHHHTTHHHHHHH
T ss_pred CHHHCCHHHHHHHHHHCcHHHHHHHHHHhhHHHHHHcCCCccHHH
Confidence 357899999999999999999999999999999999999999764
No 4
>smart00256 FBOX A Receptor for Ubiquitination Targets.
Probab=98.16 E-value=1.7e-06 Score=56.82 Aligned_cols=40 Identities=18% Similarity=0.482 Sum_probs=38.6
Q ss_pred chhHHHHHHHhcCChHHHHHHhhcchhhhccCCCchhhcc
Q 022971 25 VPESCVSSIFMHLDPPEICKLALLNKTFRGASSADFLWET 64 (289)
Q Consensus 25 LPe~cia~ils~tsP~dacr~a~vs~~fr~Aa~sD~vW~~ 64 (289)
||++++..|+++.+|.|.+++++||+.|+.+.+.+.+|..
T Consensus 1 lP~~ll~~I~~~l~~~d~~~~~~vc~~~~~~~~~~~~~~~ 40 (41)
T smart00256 1 LPDEILEEILSKLPPKDLLRLRKVSRRWRSLIDSHDFWFK 40 (41)
T ss_pred CCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcChhhhhc
Confidence 7999999999999999999999999999999999999975
No 5
>PF06881 Elongin_A: RNA polymerase II transcription factor SIII (Elongin) subunit A; InterPro: IPR010684 This family represents a conserved region within RNA polymerase II transcription factor SIII (Elongin) subunit A. In mammals, the Elongin complex activates elongation by RNA polymerase II by suppressing transient pausing of the polymerase at many sites within transcription units. Elongin is a heterotrimer composed of A, B, and C subunits of 110, 18, and 15 kilodaltons, respectively. Subunit A has been shown to function as the transcriptionally active component of Elongin [].; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus, 0016021 integral to membrane
Probab=92.48 E-value=0.099 Score=42.41 Aligned_cols=71 Identities=18% Similarity=0.349 Sum_probs=57.1
Q ss_pred CCCCchhHHHHHHHhcCChHHHHHHhhcchhhhccCCCchhhcccCCCChhhhhhhccCCCCCCCcHHHHHHHhc
Q 022971 21 SLNDVPESCVSSIFMHLDPPEICKLALLNKTFRGASSADFLWETKLPSNYKYLVKKVLNESPQKLTKKEIYARLS 95 (289)
Q Consensus 21 ~~~~LPe~cia~ils~tsP~dacr~a~vs~~fr~Aa~sD~vW~~fLP~d~~~i~~~~~~~~~~~~SKKeLy~~Lc 95 (289)
.++++|-+.|.-||...+|....++-.-|+.+ +-++|.+|.+|+=.||..-.....+ ...-|-+++|.++.
T Consensus 3 dvG~~py~ll~piL~~~~~~QL~~iE~~np~l--~~~tdeLW~~~i~rdFp~~~~~~~~--~~~~~Wr~~Y~~~~ 73 (109)
T PF06881_consen 3 DVGDVPYHLLRPILEKCSPEQLRRIEDNNPHL--IEDTDELWKKLIKRDFPEESKRQKP--KEPESWRELYEKLK 73 (109)
T ss_pred ccCCCCHHHHHHHHccCCHHHHHHHHHhCCCc--chhhHHHHHHHHHhHCcChhhcccc--cccchHHHHHHHHH
Confidence 47899999999999999999999999999766 5679999999999999752222111 13358899999986
No 6
>KOG3926 consensus F-box proteins [Amino acid transport and metabolism]
Probab=85.46 E-value=0.64 Score=44.26 Aligned_cols=79 Identities=19% Similarity=0.325 Sum_probs=56.9
Q ss_pred CCCCCCCCchhHHHHHHHhcCC-hHHHHHHhhcchhhhccCCCchhhcccCCCChhh--hhhhccCCCCCCCcHHHHHHH
Q 022971 17 TSSPSLNDVPESCVSSIFMHLD-PPEICKLALLNKTFRGASSADFLWETKLPSNYKY--LVKKVLNESPQKLTKKEIYAR 93 (289)
Q Consensus 17 ~~~~~~~~LPe~cia~ils~ts-P~dacr~a~vs~~fr~Aa~sD~vW~~fLP~d~~~--i~~~~~~~~~~~~SKKeLy~~ 93 (289)
+.+..|-|||++|+-.||-+.+ -+|.--+|.|-+++..-.+.+-+|.+..-=.|.+ |-....-+.-...--|++|+.
T Consensus 197 ~~~ltl~dLP~e~vl~Il~rlsDh~dL~s~aqa~etl~~l~~e~~iWkkLcqfHF~erQi~~~l~l~k~~q~dWkqmyf~ 276 (332)
T KOG3926|consen 197 PAGLTLHDLPLECVLNILLRLSDHRDLESLAQAWETLAKLSEERRIWKKLCQFHFNERQIHTILILSKKGQKDWKQMYFQ 276 (332)
T ss_pred cCCCCcccchHHHHHHHHHHccCcchHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhhccccchhHHHHHHH
Confidence 4678899999999999999865 8999999999999999999999999765533321 221111000011235789998
Q ss_pred hc
Q 022971 94 LS 95 (289)
Q Consensus 94 Lc 95 (289)
|-
T Consensus 277 L~ 278 (332)
T KOG3926|consen 277 LR 278 (332)
T ss_pred HH
Confidence 85
No 7
>KOG2997 consensus F-box protein FBX9 [General function prediction only]
Probab=78.65 E-value=0.72 Score=44.80 Aligned_cols=80 Identities=21% Similarity=0.355 Sum_probs=56.3
Q ss_pred CCCCchhHHHHHHHhcC-----ChHHHHHHhhcchhhhccCCCchhhcccCCCChhhhhhhccC---CCCCCCcHHHHHH
Q 022971 21 SLNDVPESCVSSIFMHL-----DPPEICKLALLNKTFRGASSADFLWETKLPSNYKYLVKKVLN---ESPQKLTKKEIYA 92 (289)
Q Consensus 21 ~~~~LPe~cia~ils~t-----sP~dacr~a~vs~~fr~Aa~sD~vW~~fLP~d~~~i~~~~~~---~~~~~~SKKeLy~ 92 (289)
.|..||.|.+-.|+... +-++--++|+|++.|+-+|..|.+|..+.=.-|+.-+-...+ .+--..|-+++|+
T Consensus 106 ~~~~LPdEvLm~I~~~vv~~~~d~rsL~~~s~vCr~F~~~~R~~~lwR~aC~KvW~~s~~~ln~~~~~sky~~SWR~Mfl 185 (366)
T KOG2997|consen 106 SISVLPDEVLMRIFRWVVSSLLDLRSLEQLSLVCRGFYKCARDPELWRLACLKVWQRSCIKLNPKILQSKYYTSWREMFL 185 (366)
T ss_pred hhhhCCHHHHHHHHHHHHhhhcchhhHHHhHhhHHHHHHHHcChHHHHHHHHHHHHHhhhccchhhhhhHHHhHHHHHHh
Confidence 36889999988887654 459999999999999999999999998877666532211111 0112356778876
Q ss_pred HhcCC-ccccC
Q 022971 93 RLSQP-NRFDN 102 (289)
Q Consensus 93 ~Lc~p-vlld~ 102 (289)
. +| |.+|+
T Consensus 186 ~--RpRvrFdG 194 (366)
T KOG2997|consen 186 E--RPRVRFDG 194 (366)
T ss_pred h--Ccceeecc
Confidence 5 55 55554
No 8
>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional
Probab=78.20 E-value=1.8 Score=42.67 Aligned_cols=38 Identities=18% Similarity=0.283 Sum_probs=34.7
Q ss_pred CCCchhHHHHHHHhcC-ChHHHHHHhhcchhhhccCCCc
Q 022971 22 LNDVPESCVSSIFMHL-DPPEICKLALLNKTFRGASSAD 59 (289)
Q Consensus 22 ~~~LPe~cia~ils~t-sP~dacr~a~vs~~fr~Aa~sD 59 (289)
-.+||+|.+..|..++ +..|..|+++|+++.|+|+...
T Consensus 4 Ws~Lp~dll~~i~~~l~~~~d~~~~~~vC~sWr~a~~~~ 42 (373)
T PLN03215 4 WSTLPEELLHMIAGRLFSNVELKRFRSICRSWRSSVSGV 42 (373)
T ss_pred hhhCCHHHHHHHHhhCCcHHHHHHHHhhhhhHHHhcccc
Confidence 3689999999999987 8999999999999999998863
No 9
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=70.18 E-value=1.8 Score=44.58 Aligned_cols=51 Identities=14% Similarity=0.167 Sum_probs=45.8
Q ss_pred CCCCCCchhHHHHHHHhcCChHHHHHHhhcchhhhccCCCchhhcccCCCC
Q 022971 19 SPSLNDVPESCVSSIFMHLDPPEICKLALLNKTFRGASSADFLWETKLPSN 69 (289)
Q Consensus 19 ~~~~~~LPe~cia~ils~tsP~dacr~a~vs~~fr~Aa~sD~vW~~fLP~d 69 (289)
...+..||-+..-.|+++++|++.|.+++||+.|+.-++.|.+|.+...+.
T Consensus 105 ~dfi~~lp~el~~~il~~Ld~~~l~~~~~v~~~w~~~~~~~~~~~~~~~~~ 155 (537)
T KOG0274|consen 105 RDFLSLLPSELSLHILSFLDGRDLLAVRQVCRNWNKLLDDDKVWWRMCREL 155 (537)
T ss_pred cchhhcccchhcccccccCCHHHhhhhhhhcchhhhhhhccchhhhhhhhh
Confidence 445788999999999999999999999999999999999999999666543
No 10
>PF02018 CBM_4_9: Carbohydrate binding domain; InterPro: IPR003305 The 1,4-beta-glucanase CenC from Cellulomonas fimi contains two cellulose-binding domains, CBD(N1) and CBD(N2), arranged in tandem at its N terminus. These homologous CBDs are distinct in their selectivity for binding amorphous and not crystalline cellulose []. Multidimensional heteronuclear nuclear magnetic resonance (NMR) spectroscopy was used to determine the tertiary structure of the 152 amino acid N-terminal cellulose-binding domain from C. fimi 1,4-beta-glucanase CenC (CBDN1) []. The tertiary structure of CBDN1 is strikingly similar to that of the bacterial 1,3-1,4-beta-glucanases, as well as other sugar-binding proteins with jelly-roll folds.; GO: 0016798 hydrolase activity, acting on glycosyl bonds; PDB: 3OEA_B 2ZEX_B 3OEB_A 2ZEY_A 2ZEW_A 1GUI_A 2W5F_A 2WZE_A 2WYS_A 2ZEZ_B ....
Probab=62.11 E-value=73 Score=24.73 Aligned_cols=64 Identities=17% Similarity=0.318 Sum_probs=41.2
Q ss_pred CCceeEEEEEEEeccccccccceeecccccccccccceEEEEEecCC-ceeeeee-eccCCCCEEEEEeeeEEecCCCCc
Q 022971 169 PQGTYSLFFRLQLGKASKRFGRRICNLEQVHGWDVKPVRFQLSTSNG-QKAVSEC-CLYDPGNWVLYHVGDFAVENDQTS 246 (289)
Q Consensus 169 p~t~Y~ay~v~kl~~~~~~~~~~~~~~~~~~Gw~~~pv~~~l~~~~g-~~~~~~~-~l~~~DGWmEielGEF~~~~~~~~ 246 (289)
|+.+|.+.|-++.. .. .++.+.+...++ .+..-.. .....+.|-++++ +|.... +.
T Consensus 60 ~G~~Y~~s~~vk~~--------------~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~s~-~ft~~~--~~ 117 (131)
T PF02018_consen 60 PGKTYTVSFWVKAD--------------SG-----GTVSVSLRDEDGSPYNWYTGQTVTITGEWTKYSG-TFTAPS--DD 117 (131)
T ss_dssp TTSEEEEEEEEEES--------------SS-----EEEEEEEEESSTTTEEEEEEEEEEETSSEEEEEE-EEEEES--SC
T ss_pred CCCEEEEEEEEEeC--------------CC-----CEEEEEEEEcCCCCcEEEEEEEEECCCCcEEEEE-EEEECC--CC
Confidence 99999999999863 11 367777777666 3221111 2233589999995 898874 34
Q ss_pred cEEEEEEE
Q 022971 247 TKIKFSMM 254 (289)
Q Consensus 247 ~eV~fsl~ 254 (289)
..+.|.+.
T Consensus 118 ~~~~l~~~ 125 (131)
T PF02018_consen 118 DTVRLYFE 125 (131)
T ss_dssp EEEEEEEE
T ss_pred ceEEEEEE
Confidence 56666553
No 11
>KOG4408 consensus Putative Mg2+ and Co2+ transporter CorD [Inorganic ion transport and metabolism]
Probab=52.79 E-value=4.3 Score=39.78 Aligned_cols=51 Identities=14% Similarity=0.181 Sum_probs=46.3
Q ss_pred CCCCCCchhHHHHHHHhcCChHHHHHHhhcchhhhccCCCchhhcccCCCC
Q 022971 19 SPSLNDVPESCVSSIFMHLDPPEICKLALLNKTFRGASSADFLWETKLPSN 69 (289)
Q Consensus 19 ~~~~~~LPe~cia~ils~tsP~dacr~a~vs~~fr~Aa~sD~vW~~fLP~d 69 (289)
..++..||-+-+-.++++..|+++.+.|+||+.+...+.-+..|+++.-.+
T Consensus 5 ~~~le~~~~~~l~~vls~~~~~~~~~~a~vs~rLk~~~s~~~lw~r~c~k~ 55 (386)
T KOG4408|consen 5 PLGLEWLPRDPLHLVLSFLLYRDLINCAYVSRRLKELGSHLPLWNRPCKKY 55 (386)
T ss_pred ccchhhcccccceeeecccchhhhhcceeechHHhhhhhcccccccccccc
Confidence 567788999999999999999999999999999999999999999998443
No 12
>KOG3233 consensus RNA polymerase III, subunit C34 [Transcription]
Probab=51.70 E-value=3.7 Score=39.08 Aligned_cols=43 Identities=21% Similarity=0.128 Sum_probs=31.0
Q ss_pred ccCCceEEEEee--ccceeecCCCCCceeeeecc--ccccccceeEeeeeEEEEe
Q 022971 111 KRSGKVCMSISA--KSMKITGIDDRRYWNQIATE--ESRFHSVAYLQQTWWCEAI 161 (289)
Q Consensus 111 k~sGkkCymLsA--R~L~ItWgdd~~YW~Wis~p--eSRF~EVAeL~~VcWLEI~ 161 (289)
+.+++|||||.- -..+||.| .|.+.. |+-|.|+ |+++||.=+.
T Consensus 137 ~n~~~KvYmLy~leP~~elTGG------~WytDqdlDvEfIe~--L~~~c~~fl~ 183 (297)
T KOG3233|consen 137 KNSRKKVYMLYDLEPDSELTGG------TWYTDQDLDVEFIEV--LKQICVRFLE 183 (297)
T ss_pred cCCCceEEEEecccccccccCC------cccccccccHHHHHH--HHHHHHHHHH
Confidence 568999999996 46889876 466544 5666655 9999985443
No 13
>PF13013 F-box-like_2: F-box-like domain
Probab=51.64 E-value=15 Score=30.26 Aligned_cols=46 Identities=24% Similarity=0.354 Sum_probs=39.2
Q ss_pred CCCCCCCchhHHHHHHHhcCChHHHHHHhhcchhhhccCCCchhhcccC
Q 022971 18 SSPSLNDVPESCVSSIFMHLDPPEICKLALLNKTFRGASSADFLWETKL 66 (289)
Q Consensus 18 ~~~~~~~LPe~cia~ils~tsP~dacr~a~vs~~fr~Aa~sD~vW~~fL 66 (289)
....+.|||+|....|..+-.+.+.+.+....+++|.+.+ ..|. +|
T Consensus 18 ~~ltl~DLP~ELl~~I~~~C~~~~l~~l~~~~~~~r~~r~--~~~~-~L 63 (109)
T PF13013_consen 18 QSLTLLDLPWELLQLIFDYCNDPILLALSRTCRAYRSWRD--HIWY-LL 63 (109)
T ss_pred cccchhhChHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHH--HHHH-Hh
Confidence 3456899999999999999999999999999999998744 4665 45
No 14
>KOG4114 consensus Cytochrome c oxidase assembly protein PET191 [Posttranslational modification, protein turnover, chaperones]
Probab=48.76 E-value=10 Score=28.95 Aligned_cols=33 Identities=48% Similarity=0.969 Sum_probs=22.3
Q ss_pred CCCCCCchhHHHHHHHhcCChHHHHHHhhcc--hhhhcc
Q 022971 19 SPSLNDVPESCVSSIFMHLDPPEICKLALLN--KTFRGA 55 (289)
Q Consensus 19 ~~~~~~LPe~cia~ils~tsP~dacr~a~vs--~~fr~A 55 (289)
..++.+|||+|++.+=.|+. |.=+.|- +-||.+
T Consensus 35 n~~~~~vPeeC~al~~af~d----CKRslvDmrkRfrgr 69 (73)
T KOG4114|consen 35 NPELKDVPEECIALMKAFLD----CKRSLVDMRKRFRGR 69 (73)
T ss_pred CCccccCcHHHHHHHHHHHH----HHHHHHHHHHHHccc
Confidence 34568899999999988874 4444443 345544
No 15
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=47.22 E-value=22 Score=35.00 Aligned_cols=48 Identities=27% Similarity=0.405 Sum_probs=44.1
Q ss_pred CCCCCCCchhHHHHHHHhcCChHHHHHHhhcchhhhccCCCchhhccc
Q 022971 18 SSPSLNDVPESCVSSIFMHLDPPEICKLALLNKTFRGASSADFLWETK 65 (289)
Q Consensus 18 ~~~~~~~LPe~cia~ils~tsP~dacr~a~vs~~fr~Aa~sD~vW~~f 65 (289)
+...++.||.|.+-.|+|.+--.|.-+++.|++-|..-|.-...|...
T Consensus 94 pgv~~~slpDEill~IFs~L~kk~LL~~~~VC~Rfyr~~~de~lW~~l 141 (419)
T KOG2120|consen 94 PGVSWDSLPDEILLGIFSCLCKKELLKVSGVCKRFYRLASDESLWQTL 141 (419)
T ss_pred CCCCcccCCHHHHHHHHHhccHHHHHHHHHHHHHHhhccccccceeee
Confidence 455689999999999999999999999999999999999999999754
No 16
>KOG2944 consensus Glyoxalase [Carbohydrate transport and metabolism]
Probab=29.68 E-value=72 Score=28.26 Aligned_cols=77 Identities=22% Similarity=0.204 Sum_probs=45.3
Q ss_pred EEEeeEEeeecCCceeEEE-EEEEeccccccccceeeccc-c----cccccccceEEEEEecCCceeeeeeec-cCCCCE
Q 022971 158 CEAIGELEFEFPQGTYSLF-FRLQLGKASKRFGRRICNLE-Q----VHGWDVKPVRFQLSTSNGQKAVSECCL-YDPGNW 230 (289)
Q Consensus 158 LEI~Gki~t~lp~t~Y~ay-~v~kl~~~~~~~~~~~~~~~-~----~~Gw~~~pv~~~l~~~~g~~~~~~~~l-~~~DGW 230 (289)
+-+.++++...|-++|+.- -.|+-+...-|...++|.+- + ..-++.+=|+|+-+.+||... .+.++ ++..+|
T Consensus 84 ~~~~~~~ELthn~Gtes~~~~~~~ngN~~prGfgHIci~V~di~sac~~lkekGV~f~Kk~~dGk~K-~iaF~~dpDgyw 162 (170)
T KOG2944|consen 84 FSRNAKLELTHNWGTESPPDQAYLNGNKEPRGFGHICIEVDDINSACERLKEKGVRFKKKLKDGKMK-PIAFLHDPDGYW 162 (170)
T ss_pred ecccCceeeecCCCCCCCcchhhcCCCCCCCccceEEEEeCCHHHHHHHHHHhCceeeecCCCcccc-ceeEEECCCCCe
Confidence 3356666666576777554 33332222224455888742 2 234455668888888899873 34554 445689
Q ss_pred EEEEe
Q 022971 231 VLYHV 235 (289)
Q Consensus 231 mEiel 235 (289)
+||+.
T Consensus 163 iei~~ 167 (170)
T KOG2944|consen 163 IEIEL 167 (170)
T ss_pred EEEee
Confidence 99975
Done!