Query 022972
Match_columns 289
No_of_seqs 246 out of 1947
Neff 6.6
Searched_HMMs 46136
Date Fri Mar 29 07:30:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022972.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/022972hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK11784 tRNA 2-selenouridine 99.9 1.4E-27 3.1E-32 226.7 8.9 159 87-251 4-167 (345)
2 TIGR03167 tRNA_sel_U_synt tRNA 99.9 4.4E-27 9.6E-32 220.6 8.1 147 99-250 2-152 (311)
3 cd01518 RHOD_YceA Member of th 99.9 2.4E-23 5.2E-28 163.6 8.3 100 84-212 2-101 (101)
4 cd01520 RHOD_YbbB Member of th 99.9 3.9E-23 8.4E-28 169.9 7.6 123 86-212 1-126 (128)
5 cd01533 4RHOD_Repeat_2 Member 99.9 2.3E-22 4.9E-27 160.3 8.0 99 81-214 7-109 (109)
6 cd01527 RHOD_YgaP Member of th 99.9 5.6E-22 1.2E-26 155.0 10.1 98 84-217 2-99 (99)
7 PRK00162 glpE thiosulfate sulf 99.9 4.1E-22 8.8E-27 158.6 8.7 103 82-219 3-105 (108)
8 PLN02160 thiosulfate sulfurtra 99.9 1.5E-21 3.3E-26 162.6 12.2 116 82-221 13-130 (136)
9 KOG1530 Rhodanese-related sulf 99.9 1.3E-21 2.9E-26 159.5 11.1 115 81-218 20-135 (136)
10 cd01523 RHOD_Lact_B Member of 99.9 1.9E-21 4.2E-26 152.3 9.4 98 86-211 1-99 (100)
11 cd01522 RHOD_1 Member of the R 99.9 3.1E-21 6.6E-26 156.4 9.9 114 86-224 1-116 (117)
12 cd01519 RHOD_HSP67B2 Member of 99.8 7.8E-21 1.7E-25 149.8 8.8 102 87-211 2-105 (106)
13 cd01526 RHOD_ThiF Member of th 99.8 8E-21 1.7E-25 154.7 8.8 111 81-216 5-117 (122)
14 cd01534 4RHOD_Repeat_3 Member 99.8 7.1E-21 1.5E-25 148.1 6.9 91 86-211 1-94 (95)
15 cd01444 GlpE_ST GlpE sulfurtra 99.8 9.2E-21 2E-25 146.6 7.5 92 85-211 1-95 (96)
16 cd01447 Polysulfide_ST Polysul 99.8 1.6E-20 3.5E-25 146.8 8.6 102 86-214 1-103 (103)
17 PF00581 Rhodanese: Rhodanese- 99.8 2.5E-20 5.5E-25 146.8 9.1 107 87-212 1-112 (113)
18 cd01525 RHOD_Kc Member of the 99.8 2.1E-20 4.5E-25 147.3 8.5 102 86-211 1-104 (105)
19 cd01528 RHOD_2 Member of the R 99.8 1.5E-20 3.3E-25 147.7 7.6 96 86-213 2-99 (101)
20 TIGR03865 PQQ_CXXCW PQQ-depend 99.8 6.6E-20 1.4E-24 157.2 12.0 114 81-217 33-162 (162)
21 cd01448 TST_Repeat_1 Thiosulfa 99.8 9.2E-20 2E-24 147.6 12.1 111 86-214 2-122 (122)
22 cd01521 RHOD_PspE2 Member of t 99.8 3.1E-20 6.7E-25 148.4 9.1 99 84-217 8-110 (110)
23 cd01524 RHOD_Pyr_redox Member 99.8 2.4E-20 5.1E-25 143.7 7.1 89 86-211 1-89 (90)
24 cd01449 TST_Repeat_2 Thiosulfa 99.8 5.2E-20 1.1E-24 147.9 8.7 104 86-211 1-117 (118)
25 cd01530 Cdc25 Cdc25 phosphatas 99.8 1.2E-19 2.7E-24 148.1 9.8 98 84-211 2-120 (121)
26 smart00450 RHOD Rhodanese Homo 99.8 9E-20 2E-24 139.5 8.1 98 97-216 2-100 (100)
27 cd01529 4RHOD_Repeats Member o 99.8 1.2E-19 2.6E-24 141.2 8.1 87 97-212 10-96 (96)
28 PRK01415 hypothetical protein; 99.8 3.7E-19 8.1E-24 161.8 8.4 104 82-214 110-213 (247)
29 cd01531 Acr2p Eukaryotic arsen 99.8 9.7E-19 2.1E-23 140.3 8.4 101 83-213 1-112 (113)
30 cd01532 4RHOD_Repeat_1 Member 99.8 5.9E-19 1.3E-23 136.8 6.7 84 95-212 6-92 (92)
31 COG0607 PspE Rhodanese-related 99.8 2.4E-18 5.2E-23 135.7 10.0 97 89-218 10-107 (110)
32 cd01535 4RHOD_Repeat_4 Member 99.8 8.2E-19 1.8E-23 147.8 7.7 87 98-219 10-96 (145)
33 PRK11493 sseA 3-mercaptopyruva 99.8 4.3E-18 9.4E-23 157.5 12.6 118 84-219 5-135 (281)
34 cd01445 TST_Repeats Thiosulfat 99.8 3.4E-18 7.5E-23 142.8 10.4 108 86-211 1-137 (138)
35 cd00158 RHOD Rhodanese Homolog 99.8 9.5E-19 2.1E-23 132.1 6.4 87 92-211 3-89 (89)
36 PLN02723 3-mercaptopyruvate su 99.8 5.7E-18 1.2E-22 159.7 12.7 121 82-220 20-152 (320)
37 PRK08762 molybdopterin biosynt 99.8 2.1E-18 4.6E-23 165.8 9.1 103 83-220 2-105 (376)
38 PRK05320 rhodanese superfamily 99.7 4.9E-18 1.1E-22 155.7 9.5 104 81-213 107-216 (257)
39 PRK09629 bifunctional thiosulf 99.7 1.6E-17 3.4E-22 168.6 13.1 119 84-220 9-130 (610)
40 cd01443 Cdc25_Acr2p Cdc25 enzy 99.7 1.1E-17 2.3E-22 134.4 8.5 98 84-211 2-112 (113)
41 PRK00142 putative rhodanese-re 99.7 1.1E-17 2.4E-22 157.4 9.8 104 81-213 109-212 (314)
42 TIGR02981 phageshock_pspE phag 99.7 1.2E-17 2.6E-22 132.6 5.8 81 98-212 17-97 (101)
43 PRK07878 molybdopterin biosynt 99.7 4.4E-17 9.5E-22 157.7 9.6 103 81-216 284-387 (392)
44 PRK10287 thiosulfate:cyanide s 99.7 2.7E-17 5.8E-22 131.3 5.9 79 99-212 20-99 (104)
45 PLN02723 3-mercaptopyruvate su 99.7 7E-17 1.5E-21 152.3 9.6 112 85-218 191-316 (320)
46 PRK11493 sseA 3-mercaptopyruva 99.7 1.2E-16 2.6E-21 148.0 9.2 111 85-218 154-278 (281)
47 PRK07411 hypothetical protein; 99.7 9.7E-17 2.1E-21 155.2 8.4 105 81-216 279-385 (390)
48 PRK09629 bifunctional thiosulf 99.6 5.3E-16 1.2E-20 157.5 11.0 114 84-219 147-271 (610)
49 COG2897 SseA Rhodanese-related 99.6 2.7E-15 5.9E-20 139.0 12.9 122 82-221 9-140 (285)
50 PRK05597 molybdopterin biosynt 99.6 7.8E-16 1.7E-20 147.2 8.8 97 81-212 258-354 (355)
51 cd01446 DSP_MapKP N-terminal r 99.6 1.4E-15 3E-20 125.2 8.7 112 86-212 2-126 (132)
52 COG2897 SseA Rhodanese-related 99.6 4.2E-15 9.1E-20 137.8 9.7 115 83-219 155-282 (285)
53 PRK05600 thiamine biosynthesis 99.6 1.8E-15 4E-20 145.4 6.9 95 84-208 271-369 (370)
54 COG1054 Predicted sulfurtransf 99.3 1E-12 2.2E-17 121.1 5.7 102 83-213 112-213 (308)
55 COG2603 Predicted ATPase [Gene 99.3 8.2E-14 1.8E-18 127.7 -1.8 146 96-244 12-160 (334)
56 PRK01269 tRNA s(4)U8 sulfurtra 99.3 3E-12 6.5E-17 127.1 6.3 73 97-204 405-481 (482)
57 KOG1529 Mercaptopyruvate sulfu 99.2 6.3E-11 1.4E-15 108.8 11.5 120 84-221 5-138 (286)
58 KOG2017 Molybdopterin synthase 99.1 7.2E-11 1.6E-15 110.8 5.4 103 81-213 314-419 (427)
59 KOG3772 M-phase inducer phosph 99.1 1.4E-10 3E-15 108.5 6.1 105 81-213 153-276 (325)
60 KOG1529 Mercaptopyruvate sulfu 98.6 7.1E-08 1.5E-12 88.9 7.0 93 97-212 170-275 (286)
61 COG5105 MIH1 Mitotic inducer, 98.3 2.2E-06 4.8E-11 80.1 7.0 101 80-213 238-358 (427)
62 PF04273 DUF442: Putative phos 96.6 0.0069 1.5E-07 48.8 6.3 80 84-192 13-106 (110)
63 TIGR01244 conserved hypothetic 96.5 0.012 2.7E-07 48.7 7.5 104 84-218 13-129 (135)
64 KOG1093 Predicted protein kina 94.3 0.0066 1.4E-07 61.1 -1.9 101 81-211 619-719 (725)
65 cd00127 DSPc Dual specificity 93.4 0.25 5.5E-06 39.9 6.3 79 98-198 27-110 (139)
66 KOG1717 Dual specificity phosp 93.2 0.089 1.9E-06 48.7 3.6 152 85-260 5-176 (343)
67 PF13350 Y_phosphatase3: Tyros 93.0 0.092 2E-06 44.6 3.2 118 78-198 22-152 (164)
68 PRK00142 putative rhodanese-re 91.7 0.023 5E-07 53.8 -2.4 41 85-126 15-55 (314)
69 smart00195 DSPc Dual specifici 88.7 1.6 3.5E-05 35.4 6.5 30 169-198 75-107 (138)
70 COG2603 Predicted ATPase [Gene 88.6 0.0053 1.2E-07 57.3 -9.1 123 85-210 128-253 (334)
71 PLN02727 NAD kinase 86.3 2.8 6.1E-05 45.1 8.1 28 83-110 266-293 (986)
72 PF00782 DSPc: Dual specificit 84.7 1.8 3.9E-05 34.7 4.7 30 169-198 70-102 (133)
73 PF13207 AAA_17: AAA domain; P 83.2 0.33 7.1E-06 38.2 -0.3 25 226-251 2-26 (121)
74 COG3453 Uncharacterized protei 82.7 5.7 0.00012 32.7 6.7 82 83-193 13-108 (130)
75 COG1220 HslU ATP-dependent pro 80.6 0.86 1.9E-05 44.0 1.5 42 209-251 34-77 (444)
76 PF13238 AAA_18: AAA domain; P 78.8 0.61 1.3E-05 36.6 -0.1 20 227-248 2-21 (129)
77 KOG3636 Uncharacterized conser 76.6 6.6 0.00014 39.2 6.2 27 99-125 326-352 (669)
78 PRK12361 hypothetical protein; 74.1 19 0.00042 36.5 9.2 20 169-188 172-192 (547)
79 cd02020 CMPK Cytidine monophos 70.5 1.8 3.9E-05 34.9 0.7 25 226-251 2-26 (147)
80 TIGR03167 tRNA_sel_U_synt tRNA 70.4 7.7 0.00017 36.8 5.0 36 82-117 134-172 (311)
81 TIGR02173 cyt_kin_arch cytidyl 69.9 1.9 4.2E-05 35.8 0.7 25 226-251 3-27 (171)
82 PF05706 CDKN3: Cyclin-depende 69.6 4.3 9.2E-05 35.2 2.8 37 160-196 121-159 (168)
83 PRK04182 cytidylate kinase; Pr 69.6 2 4.3E-05 36.0 0.8 25 226-251 3-27 (180)
84 PRK00131 aroK shikimate kinase 68.1 2.5 5.4E-05 35.0 1.1 28 223-251 4-31 (175)
85 PRK06217 hypothetical protein; 66.4 2.5 5.5E-05 36.2 0.8 25 226-251 4-28 (183)
86 PRK13946 shikimate kinase; Pro 65.9 2.8 6.1E-05 36.0 1.0 28 223-251 10-37 (184)
87 COG2453 CDC14 Predicted protei 64.6 10 0.00023 32.7 4.3 39 160-198 93-134 (180)
88 PTZ00242 protein tyrosine phos 63.9 37 0.00081 28.9 7.6 19 170-188 96-115 (166)
89 PRK14738 gmk guanylate kinase; 63.1 4 8.7E-05 35.9 1.4 30 219-250 9-38 (206)
90 COG1102 Cmk Cytidylate kinase 63.0 4.5 9.8E-05 35.2 1.6 36 226-262 3-40 (179)
91 PF04343 DUF488: Protein of un 63.0 2.7 5.9E-05 33.9 0.3 30 88-117 2-37 (122)
92 PF03193 DUF258: Protein of un 62.9 7.1 0.00015 33.5 2.9 50 187-245 3-56 (161)
93 PRK06547 hypothetical protein; 62.8 3.8 8.2E-05 35.3 1.2 30 221-251 13-42 (172)
94 PRK07261 topology modulation p 62.1 3.3 7.2E-05 35.3 0.7 25 226-251 3-27 (171)
95 COG0237 CoaE Dephospho-CoA kin 61.5 4.1 9E-05 36.1 1.2 33 224-258 3-37 (201)
96 PF03668 ATP_bind_2: P-loop AT 61.1 3.6 7.7E-05 38.6 0.8 26 224-251 2-27 (284)
97 PRK03839 putative kinase; Prov 60.0 3.6 7.8E-05 34.9 0.6 25 226-251 3-27 (180)
98 PRK04220 2-phosphoglycerate ki 59.4 7.6 0.00016 36.8 2.6 59 185-251 61-119 (301)
99 PF03853 YjeF_N: YjeF-related 59.3 17 0.00037 31.0 4.6 37 165-202 16-57 (169)
100 PRK13947 shikimate kinase; Pro 59.0 4.1 8.8E-05 34.1 0.7 25 226-251 4-28 (171)
101 PRK05416 glmZ(sRNA)-inactivati 58.9 4.8 0.0001 37.7 1.2 28 222-251 5-32 (288)
102 KOG1615 Phosphoserine phosphat 58.8 14 0.00031 33.1 4.0 62 185-251 93-172 (227)
103 PRK04040 adenylate kinase; Pro 58.6 3.9 8.4E-05 35.7 0.5 35 224-260 3-39 (188)
104 COG4822 CbiK Cobalamin biosynt 58.5 25 0.00054 32.0 5.5 43 160-202 122-172 (265)
105 COG0278 Glutaredoxin-related p 58.1 39 0.00084 27.0 5.9 73 172-250 14-96 (105)
106 PF00004 AAA: ATPase family as 57.4 3.8 8.3E-05 32.1 0.3 24 227-251 2-25 (132)
107 smart00382 AAA ATPases associa 57.1 5.3 0.00012 30.5 1.1 26 225-251 4-29 (148)
108 cd02022 DPCK Dephospho-coenzym 56.6 6 0.00013 33.8 1.4 31 226-258 2-34 (179)
109 TIGR01313 therm_gnt_kin carboh 56.2 4.8 0.0001 33.5 0.7 24 227-251 2-25 (163)
110 PRK03731 aroL shikimate kinase 55.9 4.9 0.00011 33.7 0.7 26 225-251 4-29 (171)
111 cd00227 CPT Chloramphenicol (C 55.6 5.5 0.00012 33.8 0.9 27 224-251 3-29 (175)
112 PF13344 Hydrolase_6: Haloacid 55.5 19 0.0004 28.1 3.9 41 155-198 16-57 (101)
113 PRK08118 topology modulation p 55.0 5.3 0.00012 34.0 0.8 25 226-251 4-28 (167)
114 TIGR00017 cmk cytidylate kinas 54.5 9.6 0.00021 34.0 2.4 26 225-251 4-29 (217)
115 TIGR00197 yjeF_nterm yjeF N-te 54.1 28 0.00061 30.7 5.3 40 163-203 36-78 (205)
116 TIGR01360 aden_kin_iso1 adenyl 53.8 6.3 0.00014 33.2 1.0 27 224-251 4-30 (188)
117 cd00464 SK Shikimate kinase (S 53.4 5.5 0.00012 32.4 0.6 24 227-251 3-26 (154)
118 COG3911 Predicted ATPase [Gene 52.7 7.5 0.00016 33.6 1.3 35 223-259 9-43 (183)
119 PRK13973 thymidylate kinase; P 51.9 20 0.00043 31.5 4.0 27 224-251 4-33 (213)
120 COG2074 2-phosphoglycerate kin 51.7 6.4 0.00014 36.7 0.8 58 188-253 61-118 (299)
121 PF03215 Rad17: Rad17 cell cyc 51.3 7.6 0.00016 39.5 1.3 29 222-251 44-72 (519)
122 COG1936 Predicted nucleotide k 51.2 8.5 0.00018 33.7 1.4 29 225-255 2-30 (180)
123 TIGR03815 CpaE_hom_Actino heli 50.9 51 0.0011 30.8 6.8 75 168-244 37-114 (322)
124 PF09992 DUF2233: Predicted pe 50.9 15 0.00033 30.9 2.9 43 169-211 97-144 (170)
125 COG0194 Gmk Guanylate kinase [ 49.2 5 0.00011 35.5 -0.3 26 224-250 5-30 (191)
126 cd00079 HELICc Helicase superf 48.9 32 0.00069 26.5 4.3 48 160-208 16-63 (131)
127 COG0062 Uncharacterized conser 48.6 33 0.00072 30.6 4.8 41 162-203 37-82 (203)
128 PRK06762 hypothetical protein; 48.5 7.3 0.00016 32.5 0.6 26 224-250 3-28 (166)
129 TIGR02322 phosphon_PhnN phosph 48.2 7.3 0.00016 32.9 0.5 24 225-249 3-26 (179)
130 cd01673 dNK Deoxyribonucleosid 48.1 7.8 0.00017 33.1 0.7 25 226-251 2-26 (193)
131 PRK07688 thiamine/molybdopteri 48.0 14 0.00031 35.3 2.5 42 81-123 274-322 (339)
132 PF01121 CoaE: Dephospho-CoA k 47.8 6 0.00013 34.4 -0.0 24 226-251 3-26 (180)
133 PRK12339 2-phosphoglycerate ki 47.1 9.5 0.00021 33.6 1.1 27 224-251 4-30 (197)
134 PRK08356 hypothetical protein; 47.0 7.5 0.00016 33.6 0.4 30 224-255 6-35 (195)
135 PRK13948 shikimate kinase; Pro 46.4 11 0.00024 32.8 1.3 30 221-251 8-37 (182)
136 KOG1969 DNA replication checkp 46.3 11 0.00023 40.1 1.4 32 219-251 322-353 (877)
137 PRK13976 thymidylate kinase; P 46.3 40 0.00087 29.8 5.0 53 225-278 2-74 (209)
138 PRK14731 coaE dephospho-CoA ki 46.1 10 0.00022 33.3 1.2 32 225-258 7-40 (208)
139 TIGR00853 pts-lac PTS system, 45.9 24 0.00053 27.3 3.2 40 172-212 3-46 (95)
140 PRK14733 coaE dephospho-CoA ki 45.4 8.7 0.00019 34.1 0.6 26 225-251 8-33 (204)
141 cd05565 PTS_IIB_lactose PTS_II 45.2 23 0.00051 27.8 3.0 38 174-212 2-43 (99)
142 PRK00625 shikimate kinase; Pro 45.0 9.2 0.0002 32.9 0.7 25 226-251 3-27 (173)
143 PF13191 AAA_16: AAA ATPase do 44.9 8.8 0.00019 31.9 0.5 23 221-244 22-44 (185)
144 PF13671 AAA_33: AAA domain; P 44.6 8.1 0.00018 30.9 0.3 25 226-251 2-26 (143)
145 PRK14737 gmk guanylate kinase; 44.5 9.6 0.00021 33.1 0.7 25 222-247 3-27 (186)
146 PLN03050 pyridoxine (pyridoxam 44.1 44 0.00096 30.5 5.1 30 173-203 61-93 (246)
147 PRK10565 putative carbohydrate 44.1 39 0.00084 34.2 5.1 39 164-203 52-93 (508)
148 PHA02655 hypothetical protein; 44.0 18 0.00039 27.0 2.0 14 3-17 26-39 (94)
149 cd00071 GMPK Guanosine monopho 43.9 8.7 0.00019 31.5 0.4 21 226-247 2-22 (137)
150 PRK10078 ribose 1,5-bisphospho 43.7 9.5 0.00021 32.7 0.6 24 225-249 4-27 (186)
151 PRK00081 coaE dephospho-CoA ki 43.6 9.6 0.00021 33.1 0.6 32 225-258 4-37 (194)
152 PRK05541 adenylylsulfate kinas 43.6 11 0.00025 31.7 1.0 26 222-248 6-31 (176)
153 PF13173 AAA_14: AAA domain 43.6 9.1 0.0002 30.7 0.4 25 224-249 3-27 (128)
154 KOG1970 Checkpoint RAD17-RFC c 43.4 8.8 0.00019 39.3 0.4 44 207-251 94-137 (634)
155 TIGR03263 guanyl_kin guanylate 43.4 9.6 0.00021 32.0 0.6 24 224-248 2-25 (180)
156 PF07728 AAA_5: AAA domain (dy 43.4 7.2 0.00016 31.4 -0.2 24 227-251 3-26 (139)
157 PF13521 AAA_28: AAA domain; P 43.3 7.4 0.00016 32.4 -0.2 34 227-262 3-36 (163)
158 PF01451 LMWPc: Low molecular 42.9 16 0.00034 29.7 1.7 36 175-210 1-41 (138)
159 PF07724 AAA_2: AAA domain (Cd 42.6 9.6 0.00021 32.7 0.4 27 222-249 2-28 (171)
160 PTZ00393 protein tyrosine phos 42.0 40 0.00086 31.0 4.3 39 160-198 158-198 (241)
161 PRK14730 coaE dephospho-CoA ki 41.5 11 0.00024 32.9 0.6 32 225-258 3-37 (195)
162 PF00218 IGPS: Indole-3-glycer 41.2 39 0.00085 31.1 4.2 92 84-200 140-235 (254)
163 PRK08233 hypothetical protein; 40.9 11 0.00024 31.5 0.6 25 224-249 4-28 (182)
164 TIGR00152 dephospho-CoA kinase 40.4 11 0.00025 32.2 0.6 24 226-251 2-26 (188)
165 PRK08727 hypothetical protein; 40.3 11 0.00023 33.9 0.4 30 224-255 42-74 (233)
166 PRK05057 aroK shikimate kinase 39.6 15 0.00032 31.3 1.1 26 225-251 6-31 (172)
167 PRK01184 hypothetical protein; 39.5 14 0.0003 31.3 0.9 25 225-251 3-27 (184)
168 PRK14530 adenylate kinase; Pro 39.4 12 0.00026 32.9 0.5 25 226-251 6-30 (215)
169 COG0572 Udk Uridine kinase [Nu 39.0 12 0.00026 33.8 0.5 26 223-249 8-33 (218)
170 KOG3220 Similar to bacterial d 38.8 15 0.00033 33.0 1.1 35 225-261 3-39 (225)
171 PF00485 PRK: Phosphoribulokin 38.8 10 0.00022 32.8 -0.1 22 226-248 2-23 (194)
172 PRK09590 celB cellobiose phosp 38.8 30 0.00066 27.4 2.7 38 173-211 2-43 (104)
173 PLN03049 pyridoxine (pyridoxam 38.7 46 0.001 33.3 4.6 30 173-203 60-92 (462)
174 PRK00023 cmk cytidylate kinase 38.6 24 0.00053 31.5 2.4 27 224-251 5-31 (225)
175 cd02021 GntK Gluconate kinase 38.5 12 0.00027 30.4 0.5 25 226-251 2-26 (150)
176 PRK05480 uridine/cytidine kina 38.5 14 0.0003 32.1 0.8 26 222-248 5-30 (209)
177 PRK14527 adenylate kinase; Pro 38.5 15 0.00033 31.5 1.0 28 224-252 7-34 (191)
178 PRK08154 anaerobic benzoate ca 38.3 16 0.00034 34.4 1.2 30 221-251 131-160 (309)
179 PRK14734 coaE dephospho-CoA ki 38.2 19 0.00042 31.5 1.7 25 225-251 3-27 (200)
180 COG2019 AdkA Archaeal adenylat 37.9 17 0.00036 31.9 1.2 35 223-259 4-39 (189)
181 TIGR01533 lipo_e_P4 5'-nucleot 37.8 1.7E+02 0.0038 27.0 8.0 38 159-199 124-162 (266)
182 COG1077 MreB Actin-like ATPase 37.7 1.1E+02 0.0024 29.4 6.7 59 172-230 100-162 (342)
183 TIGR00390 hslU ATP-dependent p 37.5 20 0.00044 35.6 1.9 27 224-251 48-74 (441)
184 cd02019 NK Nucleoside/nucleoti 37.5 12 0.00027 26.8 0.3 20 227-247 3-22 (69)
185 PRK14665 mnmA tRNA-specific 2- 37.3 41 0.0009 32.5 3.9 32 169-201 2-33 (360)
186 TIGR00235 udk uridine kinase. 37.0 14 0.00031 32.1 0.6 24 222-246 5-28 (207)
187 TIGR01359 UMP_CMP_kin_fam UMP- 36.7 15 0.00032 31.0 0.7 24 227-251 3-26 (183)
188 PRK10499 PTS system N,N'-diace 36.4 46 0.00099 26.3 3.4 26 173-198 4-33 (106)
189 smart00012 PTPc_DSPc Protein t 36.2 71 0.0015 23.5 4.4 30 160-189 24-57 (105)
190 smart00404 PTPc_motif Protein 36.2 71 0.0015 23.5 4.4 30 160-189 24-57 (105)
191 PRK13975 thymidylate kinase; P 36.0 15 0.00032 31.4 0.5 25 224-249 3-27 (196)
192 cd01672 TMPK Thymidine monopho 36.0 14 0.0003 31.0 0.4 25 225-250 2-29 (200)
193 PRK10824 glutaredoxin-4; Provi 36.0 88 0.0019 25.3 5.1 75 172-250 14-95 (115)
194 TIGR00150 HI0065_YjeE ATPase, 36.0 19 0.00041 29.9 1.2 28 223-251 22-49 (133)
195 cd00009 AAA The AAA+ (ATPases 35.9 16 0.00034 28.3 0.6 25 223-248 19-43 (151)
196 COG1763 MobB Molybdopterin-gua 35.8 14 0.0003 31.7 0.4 26 224-250 3-31 (161)
197 PRK11860 bifunctional 3-phosph 35.8 27 0.00059 36.4 2.6 51 198-251 415-469 (661)
198 COG1660 Predicted P-loop-conta 35.7 16 0.00035 34.1 0.8 26 224-251 2-27 (286)
199 TIGR01650 PD_CobS cobaltochela 35.6 9.5 0.00021 36.5 -0.7 32 226-258 67-100 (327)
200 COG2884 FtsE Predicted ATPase 35.5 14 0.00031 33.1 0.4 48 197-248 4-52 (223)
201 PLN02199 shikimate kinase 35.0 17 0.00036 34.5 0.8 28 223-251 102-129 (303)
202 TIGR02689 ars_reduc_gluta arse 34.9 57 0.0012 26.2 3.8 34 174-207 2-36 (126)
203 PF06723 MreB_Mbl: MreB/Mbl pr 34.9 99 0.0021 29.5 6.0 72 159-230 79-154 (326)
204 TIGR00365 monothiol glutaredox 34.7 60 0.0013 25.0 3.8 76 171-250 10-92 (97)
205 PRK14532 adenylate kinase; Pro 34.7 16 0.00036 31.0 0.6 24 227-251 4-27 (188)
206 PF13401 AAA_22: AAA domain; P 34.5 13 0.00028 29.2 -0.1 23 224-247 5-27 (131)
207 PRK00698 tmk thymidylate kinas 34.2 15 0.00034 31.3 0.4 22 224-246 4-25 (205)
208 PTZ00301 uridine kinase; Provi 34.1 16 0.00035 32.5 0.5 21 223-244 3-23 (210)
209 PF07172 GRP: Glycine rich pro 34.0 32 0.00069 26.9 2.1 14 32-45 6-19 (95)
210 PF10144 SMP_2: Bacterial viru 33.9 98 0.0021 27.7 5.5 71 37-107 18-92 (210)
211 PLN02918 pyridoxine (pyridoxam 33.7 60 0.0013 33.3 4.5 30 173-203 136-168 (544)
212 cd05564 PTS_IIB_chitobiose_lic 33.6 43 0.00093 25.8 2.8 37 174-211 1-41 (96)
213 PRK10310 PTS system galactitol 33.6 86 0.0019 24.1 4.5 38 174-212 4-46 (94)
214 PRK14732 coaE dephospho-CoA ki 33.5 23 0.00051 31.0 1.4 33 226-260 2-36 (196)
215 PTZ00451 dephospho-CoA kinase; 33.5 18 0.0004 33.0 0.8 33 225-259 3-38 (244)
216 PRK10081 entericidin B membran 33.5 1.2E+02 0.0026 20.9 4.5 27 32-58 5-31 (48)
217 PRK06696 uridine kinase; Valid 33.4 19 0.0004 31.9 0.8 26 222-248 21-46 (223)
218 PRK00091 miaA tRNA delta(2)-is 33.3 18 0.0004 34.1 0.8 26 224-250 5-30 (307)
219 PF02590 SPOUT_MTase: Predicte 33.2 62 0.0013 27.5 3.9 46 164-209 59-109 (155)
220 cd01428 ADK Adenylate kinase ( 33.1 18 0.00038 30.6 0.6 24 227-251 3-26 (194)
221 PRK02496 adk adenylate kinase; 33.1 18 0.0004 30.6 0.7 26 226-252 4-29 (184)
222 PRK00300 gmk guanylate kinase; 33.0 19 0.0004 31.0 0.7 26 222-248 4-29 (205)
223 PRK05973 replicative DNA helic 32.9 22 0.00047 32.4 1.1 30 221-251 62-94 (237)
224 TIGR02640 gas_vesic_GvpN gas v 32.8 19 0.0004 32.9 0.7 23 228-251 26-48 (262)
225 PF00625 Guanylate_kin: Guanyl 32.7 16 0.00036 31.0 0.3 24 224-248 3-26 (183)
226 PF02223 Thymidylate_kin: Thym 32.6 71 0.0015 26.9 4.3 49 230-279 3-69 (186)
227 PF02302 PTS_IIB: PTS system, 32.2 46 0.00099 24.6 2.7 32 174-206 1-37 (90)
228 PF08477 Miro: Miro-like prote 32.1 20 0.00043 27.5 0.7 17 228-245 4-20 (119)
229 PRK13802 bifunctional indole-3 32.1 2.4E+02 0.0052 29.9 8.7 89 86-199 144-236 (695)
230 smart00226 LMWPc Low molecular 31.9 40 0.00088 27.3 2.5 36 175-210 1-37 (140)
231 PLN02422 dephospho-CoA kinase 31.9 23 0.00051 32.1 1.2 34 225-260 3-38 (232)
232 cd02023 UMPK Uridine monophosp 31.7 18 0.00039 31.1 0.4 21 226-247 2-22 (198)
233 PRK13957 indole-3-glycerol-pho 31.7 2.8E+02 0.0061 25.5 8.2 88 85-198 134-225 (247)
234 COG1162 Predicted GTPases [Gen 31.4 58 0.0013 30.9 3.8 48 188-244 133-184 (301)
235 smart00072 GuKc Guanylate kina 31.4 15 0.00033 31.4 -0.2 23 224-247 3-25 (184)
236 COG1126 GlnQ ABC-type polar am 31.3 13 0.00029 33.8 -0.5 42 199-244 7-48 (240)
237 PRK11545 gntK gluconate kinase 31.3 20 0.00043 30.2 0.6 21 230-251 2-22 (163)
238 cd02071 MM_CoA_mut_B12_BD meth 31.1 1.6E+02 0.0034 23.4 5.9 47 157-206 38-88 (122)
239 COG0283 Cmk Cytidylate kinase 31.0 41 0.00089 30.5 2.6 39 225-264 6-46 (222)
240 PRK12338 hypothetical protein; 31.0 22 0.00047 34.0 0.9 27 224-251 5-31 (319)
241 PRK08349 hypothetical protein; 30.9 62 0.0014 28.0 3.7 27 174-201 2-28 (198)
242 TIGR00682 lpxK tetraacyldisacc 30.7 22 0.00047 33.7 0.8 26 221-246 26-52 (311)
243 PRK03333 coaE dephospho-CoA ki 30.5 21 0.00046 34.8 0.7 25 225-251 3-27 (395)
244 PLN02460 indole-3-glycerol-pho 30.5 3.7E+02 0.008 26.0 9.1 91 85-199 213-313 (338)
245 COG1737 RpiR Transcriptional r 30.5 1.4E+02 0.0031 27.4 6.2 51 159-210 117-169 (281)
246 COG0560 SerB Phosphoserine pho 30.2 55 0.0012 29.1 3.3 66 185-251 82-159 (212)
247 PF13555 AAA_29: P-loop contai 30.2 20 0.00044 25.8 0.4 19 225-244 25-43 (62)
248 PRK13104 secA preprotein trans 30.1 61 0.0013 35.2 4.1 52 160-212 432-483 (896)
249 PRK03846 adenylylsulfate kinas 29.9 24 0.00051 30.6 0.8 25 222-247 23-47 (198)
250 PRK00889 adenylylsulfate kinas 29.9 23 0.00049 29.8 0.7 24 223-247 4-27 (175)
251 TIGR00635 ruvB Holliday juncti 29.8 26 0.00057 32.1 1.2 27 224-251 31-57 (305)
252 PF10443 RNA12: RNA12 protein; 29.8 36 0.00077 33.9 2.1 56 207-272 8-92 (431)
253 PRK05298 excinuclease ABC subu 29.7 53 0.0011 34.3 3.5 50 158-208 432-481 (652)
254 PF00308 Bac_DnaA: Bacterial d 29.4 23 0.0005 31.5 0.7 24 223-247 34-57 (219)
255 TIGR01672 AphA HAD superfamily 29.4 1.3E+02 0.0027 27.4 5.5 27 80-106 43-71 (237)
256 PF06309 Torsin: Torsin; Inte 29.3 26 0.00057 29.0 0.9 40 203-247 37-76 (127)
257 PRK14528 adenylate kinase; Pro 29.3 23 0.00051 30.4 0.7 25 226-251 4-28 (186)
258 PF03162 Y_phosphatase2: Tyros 29.2 54 0.0012 28.0 2.9 41 158-198 75-119 (164)
259 cd02024 NRK1 Nicotinamide ribo 29.1 21 0.00046 31.2 0.4 22 226-248 2-23 (187)
260 PRK06893 DNA replication initi 29.1 21 0.00045 31.8 0.4 23 224-247 40-62 (229)
261 cd05567 PTS_IIB_mannitol PTS_I 29.0 66 0.0014 24.1 3.1 36 174-210 2-42 (87)
262 PRK14531 adenylate kinase; Pro 28.9 24 0.00051 30.2 0.7 25 226-251 5-29 (183)
263 TIGR01587 cas3_core CRISPR-ass 28.9 74 0.0016 29.8 4.1 50 160-209 210-260 (358)
264 PRK04195 replication factor C 28.6 29 0.00062 34.7 1.3 28 223-251 39-66 (482)
265 PRK00103 rRNA large subunit me 28.6 1.8E+02 0.0039 24.7 6.0 48 163-210 58-110 (157)
266 PRK05201 hslU ATP-dependent pr 28.4 41 0.00089 33.6 2.3 27 224-251 51-77 (443)
267 PRK00652 lpxK tetraacyldisacch 28.0 26 0.00056 33.4 0.8 30 221-250 47-80 (325)
268 PRK08099 bifunctional DNA-bind 28.0 22 0.00049 34.8 0.4 38 222-260 218-255 (399)
269 COG0529 CysC Adenylylsulfate k 27.9 23 0.0005 31.3 0.4 26 224-250 24-52 (197)
270 PRK09087 hypothetical protein; 27.9 27 0.0006 31.2 0.9 25 224-249 45-69 (226)
271 PRK00278 trpC indole-3-glycero 27.8 3.4E+02 0.0073 24.8 8.1 42 157-200 196-237 (260)
272 PF05729 NACHT: NACHT domain 27.6 23 0.0005 28.5 0.4 19 226-245 3-21 (166)
273 TIGR00041 DTMP_kinase thymidyl 27.6 23 0.00051 30.1 0.4 23 224-247 4-26 (195)
274 cd02028 UMPK_like Uridine mono 27.4 24 0.00051 30.3 0.4 21 226-247 2-22 (179)
275 PF01583 APS_kinase: Adenylyls 27.4 23 0.0005 30.2 0.3 25 226-251 5-32 (156)
276 PRK13974 thymidylate kinase; P 27.4 1.2E+02 0.0027 26.4 5.0 54 224-278 4-83 (212)
277 COG0324 MiaA tRNA delta(2)-iso 27.4 26 0.00057 33.3 0.7 27 223-250 3-29 (308)
278 COG1440 CelA Phosphotransferas 27.3 68 0.0015 25.6 2.9 23 173-195 2-24 (102)
279 TIGR00382 clpX endopeptidase C 27.3 27 0.00057 34.6 0.8 27 224-251 117-143 (413)
280 PRK14061 unknown domain/lipoat 27.1 2.1E+02 0.0045 29.6 7.1 77 30-106 11-91 (562)
281 TIGR00631 uvrb excinuclease AB 27.1 70 0.0015 33.5 3.8 51 157-208 427-477 (655)
282 PLN02165 adenylate isopentenyl 27.0 32 0.0007 33.1 1.3 27 223-250 43-69 (334)
283 PF03266 NTPase_1: NTPase; In 26.8 19 0.00042 30.7 -0.3 20 227-247 3-22 (168)
284 PF02492 cobW: CobW/HypB/UreG, 26.7 22 0.00048 30.3 0.1 19 226-245 3-21 (178)
285 TIGR00073 hypB hydrogenase acc 26.7 25 0.00053 30.7 0.4 26 221-247 20-45 (207)
286 PLN02200 adenylate kinase fami 26.6 31 0.00067 31.1 1.0 27 224-251 44-70 (234)
287 PRK13949 shikimate kinase; Pro 26.5 29 0.00063 29.5 0.8 25 226-251 4-28 (169)
288 PRK07667 uridine kinase; Provi 26.5 25 0.00055 30.4 0.4 23 223-246 17-39 (193)
289 PLN02645 phosphoglycolate phos 26.5 1.8E+02 0.0039 27.1 6.2 24 84-107 14-37 (311)
290 PRK12906 secA preprotein trans 26.3 83 0.0018 33.8 4.2 48 162-210 430-477 (796)
291 COG1428 Deoxynucleoside kinase 26.2 28 0.0006 31.4 0.6 28 223-251 4-31 (216)
292 cd01131 PilT Pilus retraction 26.2 25 0.00055 30.5 0.4 22 225-247 3-24 (198)
293 cd03028 GRX_PICOT_like Glutare 25.8 99 0.0021 23.2 3.6 75 171-249 6-87 (90)
294 PF00931 NB-ARC: NB-ARC domain 25.8 26 0.00057 31.5 0.4 26 221-247 17-42 (287)
295 TIGR03015 pepcterm_ATPase puta 25.8 29 0.00063 31.0 0.7 23 224-247 44-66 (269)
296 KOG0333 U5 snRNP-like RNA heli 25.7 90 0.002 32.2 4.1 36 172-208 517-552 (673)
297 PRK09200 preprotein translocas 25.4 95 0.0021 33.4 4.5 39 170-209 426-464 (790)
298 TIGR00963 secA preprotein tran 25.2 98 0.0021 33.1 4.5 47 161-208 394-440 (745)
299 TIGR03714 secA2 accessory Sec 25.2 1E+02 0.0023 32.9 4.7 49 161-210 413-461 (762)
300 PF00733 Asn_synthase: Asparag 25.1 1E+02 0.0022 26.8 4.0 43 161-203 6-48 (255)
301 PF13476 AAA_23: AAA domain; P 25.1 26 0.00056 29.3 0.2 22 222-244 18-39 (202)
302 COG0300 DltE Short-chain dehyd 25.0 22 0.00047 33.1 -0.3 37 222-261 5-41 (265)
303 PRK05642 DNA replication initi 25.0 30 0.00065 31.0 0.6 21 224-245 46-66 (234)
304 PHA02244 ATPase-like protein 25.0 30 0.00065 33.9 0.7 24 227-251 123-146 (383)
305 PF01488 Shikimate_DH: Shikima 25.0 1.2E+02 0.0025 24.6 4.1 39 171-210 11-49 (135)
306 COG0563 Adk Adenylate kinase a 24.9 32 0.0007 29.7 0.8 24 228-252 5-28 (178)
307 PRK12898 secA preprotein trans 24.8 97 0.0021 32.6 4.3 37 171-208 472-508 (656)
308 cd01130 VirB11-like_ATPase Typ 24.7 28 0.00061 29.8 0.4 22 223-245 25-46 (186)
309 PRK14729 miaA tRNA delta(2)-is 24.7 30 0.00065 32.7 0.6 23 224-247 5-27 (300)
310 PRK13833 conjugal transfer pro 24.6 28 0.00061 33.2 0.4 22 224-246 145-166 (323)
311 TIGR00176 mobB molybdopterin-g 24.6 32 0.00069 28.9 0.7 24 226-250 2-28 (155)
312 PRK00279 adk adenylate kinase; 24.6 32 0.00068 30.1 0.7 24 227-251 4-27 (215)
313 TIGR01351 adk adenylate kinase 24.5 33 0.00071 29.9 0.8 24 227-251 3-26 (210)
314 TIGR00824 EIIA-man PTS system, 24.4 2E+02 0.0043 22.8 5.3 38 166-205 52-91 (116)
315 TIGR00174 miaA tRNA isopenteny 24.3 33 0.00072 32.2 0.8 24 226-250 2-25 (287)
316 PTZ00110 helicase; Provisional 24.2 1.1E+02 0.0024 31.0 4.7 37 171-208 376-412 (545)
317 PLN02840 tRNA dimethylallyltra 24.1 42 0.00091 33.3 1.5 28 222-250 20-47 (421)
318 COG0603 Predicted PP-loop supe 24.1 1E+02 0.0022 28.0 3.8 30 173-203 3-32 (222)
319 cd02030 NDUO42 NADH:Ubiquinone 24.1 31 0.00067 30.4 0.5 23 226-249 2-24 (219)
320 cd01120 RecA-like_NTPases RecA 24.0 31 0.00067 27.5 0.5 20 227-247 3-22 (165)
321 COG1125 OpuBA ABC-type proline 23.9 21 0.00046 33.5 -0.6 44 197-244 4-47 (309)
322 COG2185 Sbm Methylmalonyl-CoA 23.7 1.2E+02 0.0027 25.6 4.0 45 160-207 54-102 (143)
323 TIGR00640 acid_CoA_mut_C methy 23.6 2.5E+02 0.0055 22.9 5.9 46 158-206 42-91 (132)
324 PRK13530 arsenate reductase; P 23.6 1.3E+02 0.0027 24.6 4.1 35 173-207 4-39 (133)
325 cd00047 PTPc Protein tyrosine 23.4 1E+02 0.0022 27.0 3.7 31 160-190 152-185 (231)
326 PRK10126 tyrosine phosphatase; 23.3 69 0.0015 26.5 2.5 37 173-210 3-40 (147)
327 COG0703 AroK Shikimate kinase 23.3 35 0.00076 29.7 0.7 25 226-251 5-29 (172)
328 KOG0330 ATP-dependent RNA heli 23.2 1.9E+02 0.0041 28.8 5.7 38 172-210 300-337 (476)
329 COG3842 PotA ABC-type spermidi 23.2 20 0.00044 34.6 -0.9 42 199-244 10-51 (352)
330 PRK11192 ATP-dependent RNA hel 23.2 1.4E+02 0.0029 29.0 4.9 37 171-208 244-280 (434)
331 TIGR00268 conserved hypothetic 23.2 97 0.0021 28.0 3.6 32 169-201 9-40 (252)
332 PF07726 AAA_3: ATPase family 23.1 22 0.00048 29.6 -0.6 27 229-256 5-33 (131)
333 cd02025 PanK Pantothenate kina 23.0 33 0.00071 30.6 0.5 20 226-246 2-21 (220)
334 PRK09518 bifunctional cytidyla 23.0 46 0.00099 35.1 1.6 25 226-251 4-28 (712)
335 PF04722 Ssu72: Ssu72-like pro 22.7 1E+02 0.0022 27.5 3.4 29 174-203 3-32 (195)
336 cd00115 LMWPc Substituted upda 22.7 70 0.0015 26.0 2.4 37 174-210 2-40 (141)
337 cd04163 Era Era subfamily. Er 22.6 33 0.00072 27.1 0.4 20 226-246 6-25 (168)
338 TIGR03372 putres_am_tran putre 22.6 1.2E+02 0.0025 30.1 4.3 54 159-212 120-178 (442)
339 PF01202 SKI: Shikimate kinase 22.5 26 0.00057 29.2 -0.3 18 234-251 2-19 (158)
340 PF02879 PGM_PMM_II: Phosphogl 22.4 1.8E+02 0.0039 22.1 4.6 32 173-205 22-53 (104)
341 PRK04213 GTP-binding protein; 22.3 46 0.001 28.2 1.2 21 224-245 10-30 (201)
342 TIGR03042 PS_II_psbQ_bact phot 22.3 2.6E+02 0.0057 23.6 5.7 24 46-69 16-40 (142)
343 PRK14569 D-alanyl-alanine synt 22.3 1.7E+02 0.0037 27.0 5.2 73 173-251 4-84 (296)
344 PRK13851 type IV secretion sys 22.2 33 0.00072 33.0 0.4 25 222-247 161-185 (344)
345 COG1419 FlhF Flagellar GTP-bin 22.2 37 0.00079 33.5 0.6 27 221-248 201-227 (407)
346 PRK11391 etp phosphotyrosine-p 22.1 80 0.0017 26.2 2.6 37 173-210 3-40 (144)
347 PRK13900 type IV secretion sys 22.1 34 0.00074 32.6 0.4 23 223-246 160-182 (332)
348 cd01876 YihA_EngB The YihA (En 22.1 34 0.00073 27.2 0.3 18 227-245 3-20 (170)
349 PRK08384 thiamine biosynthesis 22.1 1.1E+02 0.0025 29.8 4.0 27 172-198 180-206 (381)
350 TIGR02524 dot_icm_DotB Dot/Icm 21.9 37 0.00081 32.7 0.7 24 222-246 133-156 (358)
351 PRK09825 idnK D-gluconate kina 21.9 39 0.00084 28.9 0.7 25 225-250 5-29 (176)
352 PLN02347 GMP synthetase 21.9 1.9E+02 0.004 29.7 5.7 51 157-208 214-267 (536)
353 PF14617 CMS1: U3-containing 9 21.8 1.4E+02 0.003 27.6 4.3 41 155-195 100-149 (252)
354 COG0419 SbcC ATPase involved i 21.8 37 0.0008 36.8 0.6 23 221-244 23-45 (908)
355 PF06564 YhjQ: YhjQ protein; 21.8 43 0.00092 30.7 1.0 21 224-244 2-22 (243)
356 PRK13477 bifunctional pantoate 21.7 40 0.00086 34.3 0.8 27 224-251 285-311 (512)
357 TIGR02782 TrbB_P P-type conjug 21.6 35 0.00076 32.0 0.4 23 224-247 133-155 (299)
358 PF00005 ABC_tran: ABC transpo 21.6 35 0.00076 27.0 0.3 23 222-245 10-32 (137)
359 PRK03992 proteasome-activating 21.6 48 0.001 32.2 1.4 29 222-251 164-192 (389)
360 COG1618 Predicted nucleotide k 21.6 39 0.00085 29.5 0.6 25 226-251 8-35 (179)
361 PRK08903 DnaA regulatory inact 21.6 40 0.00086 29.6 0.7 23 224-247 43-65 (227)
362 PRK00080 ruvB Holliday junctio 21.6 45 0.00098 31.3 1.1 27 224-251 52-78 (328)
363 PRK07933 thymidylate kinase; V 21.2 37 0.0008 30.0 0.4 21 225-246 2-22 (213)
364 cd01712 ThiI ThiI is required 21.2 1.2E+02 0.0026 25.5 3.6 32 175-207 2-35 (177)
365 cd02027 APSK Adenosine 5'-phos 21.1 39 0.00084 27.9 0.5 22 226-248 2-23 (149)
366 TIGR03499 FlhF flagellar biosy 21.1 41 0.00089 31.1 0.7 23 223-246 194-216 (282)
367 COG5564 Predicted TIM-barrel e 21.0 1.3E+02 0.0028 27.6 3.8 48 208-257 75-122 (276)
368 COG4778 PhnL ABC-type phosphon 21.0 37 0.00081 30.1 0.4 21 223-244 37-57 (235)
369 COG0513 SrmB Superfamily II DN 21.0 1.4E+02 0.003 30.2 4.5 34 174-208 275-308 (513)
370 cd05566 PTS_IIB_galactitol PTS 20.9 1.1E+02 0.0025 22.5 3.0 25 174-198 2-31 (89)
371 PF00437 T2SE: Type II/IV secr 20.8 33 0.00072 31.0 0.1 23 223-246 127-149 (270)
372 PRK13107 preprotein translocas 20.7 1.2E+02 0.0025 33.2 4.0 52 160-212 437-488 (908)
373 PF03610 EIIA-man: PTS system 20.6 3.9E+02 0.0085 20.8 6.3 37 167-205 52-90 (116)
374 PRK06620 hypothetical protein; 20.5 45 0.00097 29.6 0.8 25 224-249 45-69 (214)
375 cd04159 Arl10_like Arl10-like 20.4 38 0.00082 26.6 0.3 19 227-246 3-21 (159)
376 COG5350 Predicted protein tyro 20.3 88 0.0019 27.0 2.5 24 168-191 89-113 (172)
377 COG4087 Soluble P-type ATPase 20.3 1.2E+02 0.0027 25.5 3.3 95 175-287 46-149 (152)
378 PF03054 tRNA_Me_trans: tRNA m 20.3 81 0.0018 30.6 2.6 27 174-201 2-28 (356)
379 TIGR00614 recQ_fam ATP-depende 20.2 1.4E+02 0.0029 29.6 4.2 37 171-208 225-261 (470)
380 COG0482 TrmU Predicted tRNA(5- 20.1 1.1E+02 0.0024 29.7 3.4 29 172-201 3-31 (356)
381 KOG1404 Alanine-glyoxylate ami 20.1 2.4E+02 0.0053 28.0 5.7 41 155-195 91-131 (442)
382 TIGR00537 hemK_rel_arch HemK-r 20.1 2E+02 0.0044 24.0 4.8 45 158-202 119-163 (179)
383 KOG1716 Dual specificity phosp 20.1 1.7E+02 0.0036 27.1 4.6 29 170-198 153-184 (285)
384 KOG0091 GTPase Rab39, small G 20.0 57 0.0012 28.6 1.3 37 222-260 8-50 (213)
No 1
>PRK11784 tRNA 2-selenouridine synthase; Provisional
Probab=99.94 E-value=1.4e-27 Score=226.73 Aligned_cols=159 Identities=19% Similarity=0.260 Sum_probs=126.5
Q ss_pred CHHHHHHhhcCCCcEEEEeCChhhhhhccCCCcEeeCCCCCcccccCCCCCccccccccCCccCCCCCC-cccHHHHHHH
Q 022972 87 TPREAGYAVQLSSKTLLDVRPSTERKKAWIKGSIWIPIFDIDDTFDAGSLPQKVTNFVMGGWWSGVPTL-SYNKQFLSKV 165 (289)
Q Consensus 87 s~~el~~~l~~~~~vlIDVRs~~Ey~~ghIPGAinIP~~~~~~~~~vgtlyk~~~~~~~~a~~~g~~~~-~~~~~f~~~~ 165 (289)
+..++.+.+ .++.+|||||+|.||.+||||||+|+|+.+++++..|||+|||.|++.+. -.|.... ...++...+.
T Consensus 4 ~~~~~~~~~-~~~~~lIDVRsp~Ef~~ghIpgAiniPl~~~~er~~vgt~Ykq~g~~~a~--~lg~~lv~~~l~~~~~~~ 80 (345)
T PRK11784 4 DAQDFRALF-LNDTPLIDVRSPIEFAEGHIPGAINLPLLNDEERAEVGTCYKQQGQFAAI--ALGHALVAGNIAAHREEA 80 (345)
T ss_pred cHHHHHHHH-hCCCEEEECCCHHHHhcCCCCCeeeCCCCChhHHHhhchhhcccCHHHHH--HhhhhhcchhHHHHHHHH
Confidence 345555544 35789999999999999999999999999999999999999999976543 2333332 2334444444
Q ss_pred HhcCC-CCCcEEEEc-CCCCchHHHHHHHHHccCCCeeEccccHHHHHhCCCCccC--CCCCccccccccccccchhhhh
Q 022972 166 EEKLP-KDTDLIVAC-QKGLRSLAACELLYNAGYRNLFWVQGGLEAAEEEDLVREG--PQPLKFAGIGGLSEFLGYTSQL 241 (289)
Q Consensus 166 ~~~l~-k~~~IVvyC-~~G~RS~~aa~~L~~~G~~nV~~L~GG~~aw~~~gl~~~~--~~~~~~~~~~G~t~~~Gkt~~l 241 (289)
....+ ++++||+|| ++|+||..+++.|..+|| +++.|+|||++|++.+++... +.+..+.+++|.|| +|||+++
T Consensus 81 ~~~~~~~~~~ivvyC~rgG~RS~~aa~~L~~~G~-~v~~L~GG~~awr~~~~~~~~~~~~~~~~ivl~G~TG-sGKT~iL 158 (345)
T PRK11784 81 WADFPRANPRGLLYCWRGGLRSGSVQQWLKEAGI-DVPRLEGGYKAYRRFVIDTLEEAPAQFPLVVLGGNTG-SGKTELL 158 (345)
T ss_pred HHhcccCCCeEEEEECCCChHHHHHHHHHHHcCC-CcEEEcCCHHHHHHhhHHHHhhhcccCceEecCCCCc-ccHHHHH
Confidence 43444 788999999 589999999999999999 599999999999998776554 35677889999995 9999999
Q ss_pred cccchhcCCC
Q 022972 242 CYPFLHISYP 251 (289)
Q Consensus 242 ~~l~~~~g~~ 251 (289)
+.| .+.|++
T Consensus 159 ~~L-~~~~~~ 167 (345)
T PRK11784 159 QAL-ANAGAQ 167 (345)
T ss_pred HHH-HhcCCe
Confidence 999 666654
No 2
>TIGR03167 tRNA_sel_U_synt tRNA 2-selenouridine synthase. The Escherichia coli YbbB protein was shown to encode a selenophosphate-dependent tRNA 2-selenouridine synthase, essential for modification of some tRNAs to replace a sulfur atom with selenium. This enzyme works with SelD, the selenium donor protein, which also acts in selenocysteine incorporation. Although the members of this protein family show a fairly deep split, sequences from both sides of the split are supported by co-occurence with, and often proximity to, the selD gene.
Probab=99.94 E-value=4.4e-27 Score=220.56 Aligned_cols=147 Identities=21% Similarity=0.306 Sum_probs=124.1
Q ss_pred CcEEEEeCChhhhhhccCCCcEeeCCCCCcccccCCCCCccccccccCCccCCCCC-CcccHHHHHHHHhcCCCCCcEEE
Q 022972 99 SKTLLDVRPSTERKKAWIKGSIWIPIFDIDDTFDAGSLPQKVTNFVMGGWWSGVPT-LSYNKQFLSKVEEKLPKDTDLIV 177 (289)
Q Consensus 99 ~~vlIDVRs~~Ey~~ghIPGAinIP~~~~~~~~~vgtlyk~~~~~~~~a~~~g~~~-~~~~~~f~~~~~~~l~k~~~IVv 177 (289)
+.+|||||+|.||.+||||||+|||+.+++++..|||+|||.|++. |...|... ..+.+++++++....++++++|+
T Consensus 2 ~~~liDVRsp~Ef~~ghipgAiniPl~~~~er~~vgt~ykq~g~~~--A~~lg~~~v~~~l~~~i~~~~~~~~~~~~vvv 79 (311)
T TIGR03167 2 FDPLIDVRSPAEFAEGHLPGAINLPLLNDEERAEVGTLYKQVGPFA--AIKLGLALVSPNLAAHVEQWRAFADGPPQPLL 79 (311)
T ss_pred CCEEEECCCHHHHhcCCCcCCEecccccchhhhhhhhhhhcccHHH--HHHHhHhhhhHHHHHHHHHHHhhcCCCCcEEE
Confidence 4689999999999999999999999999999999999999999754 34556665 33667778877666666667999
Q ss_pred Ec-CCCCchHHHHHHHHHccCCCeeEccccHHHHHhCCCCccC--CCCCccccccccccccchhhhhcccchhcCC
Q 022972 178 AC-QKGLRSLAACELLYNAGYRNLFWVQGGLEAAEEEDLVREG--PQPLKFAGIGGLSEFLGYTSQLCYPFLHISY 250 (289)
Q Consensus 178 yC-~~G~RS~~aa~~L~~~G~~nV~~L~GG~~aw~~~gl~~~~--~~~~~~~~~~G~t~~~Gkt~~l~~l~~~~g~ 250 (289)
|| ++|+||..+++.|+.+|| +++.|+||+++|+..+.+... +.+..+.+++|.| ++|||++++.+ ++.|+
T Consensus 80 yC~~gG~RS~~aa~~L~~~G~-~v~~L~GG~~aw~~~~~~~~~~~~~~~~~~vl~g~t-g~gKt~Ll~~L-~~~~~ 152 (311)
T TIGR03167 80 YCWRGGMRSGSLAWLLAQIGF-RVPRLEGGYKAYRRFVIDQLEELPQPFPLIVLGGMT-GSGKTELLHAL-ANAGA 152 (311)
T ss_pred EECCCChHHHHHHHHHHHcCC-CEEEecChHHHHHHhhhhhhhccCCCCceeccCCCC-CcCHHHHHHHH-hcCCC
Confidence 99 589999999999999999 599999999999998877664 3566777899988 59999999999 55554
No 3
>cd01518 RHOD_YceA Member of the Rhodanese Homology Domain superfamily. This CD includes Escherichia coli YceA, Bacillus subtilis YbfQ, and similar uncharacterized proteins.
Probab=99.89 E-value=2.4e-23 Score=163.64 Aligned_cols=100 Identities=24% Similarity=0.348 Sum_probs=83.6
Q ss_pred ceeCHHHHHHhhcCCCcEEEEeCChhhhhhccCCCcEeeCCCCCcccccCCCCCccccccccCCccCCCCCCcccHHHHH
Q 022972 84 KVLTPREAGYAVQLSSKTLLDVRPSTERKKAWIKGSIWIPIFDIDDTFDAGSLPQKVTNFVMGGWWSGVPTLSYNKQFLS 163 (289)
Q Consensus 84 ~~Is~~el~~~l~~~~~vlIDVRs~~Ey~~ghIPGAinIP~~~~~~~~~vgtlyk~~~~~~~~a~~~g~~~~~~~~~f~~ 163 (289)
+.|+++++.++++.++.+|||||++.||+.+|||||+|||+.++.+.. +.+.
T Consensus 2 ~~is~~~l~~~~~~~~~~iiDvR~~~e~~~ghi~gA~~ip~~~~~~~~----------------------------~~~~ 53 (101)
T cd01518 2 TYLSPAEWNELLEDPEVVLLDVRNDYEYDIGHFKGAVNPDVDTFREFP----------------------------FWLD 53 (101)
T ss_pred CcCCHHHHHHHHcCCCEEEEEcCChhhhhcCEeccccCCCcccHhHhH----------------------------HHHH
Confidence 368999999988877889999999999999999999999987643211 1112
Q ss_pred HHHhcCCCCCcEEEEcCCCCchHHHHHHHHHccCCCeeEccccHHHHHh
Q 022972 164 KVEEKLPKDTDLIVACQKGLRSLAACELLYNAGYRNLFWVQGGLEAAEE 212 (289)
Q Consensus 164 ~~~~~l~k~~~IVvyC~~G~RS~~aa~~L~~~G~~nV~~L~GG~~aw~~ 212 (289)
++. ..+++++|||||++|.||..++..|+.+||+||+.|+||+.+|.+
T Consensus 54 ~~~-~~~~~~~ivvyC~~G~rs~~a~~~L~~~G~~~v~~l~GG~~~W~~ 101 (101)
T cd01518 54 ENL-DLLKGKKVLMYCTGGIRCEKASAYLKERGFKNVYQLKGGILKYLE 101 (101)
T ss_pred hhh-hhcCCCEEEEECCCchhHHHHHHHHHHhCCcceeeechhHHHHhC
Confidence 211 247889999999999999999999999999999999999999963
No 4
>cd01520 RHOD_YbbB Member of the Rhodanese Homology Domain superfamily. This CD includes several putative ATP /GTP binding proteins including E. coli YbbB.
Probab=99.88 E-value=3.9e-23 Score=169.91 Aligned_cols=123 Identities=23% Similarity=0.333 Sum_probs=92.9
Q ss_pred eCHHHHHHhhcCCCcEEEEeCChhhhhhccCCCcEeeCCCCCcccccCCCCCccccccccCCccCCCCCC-cccHHHHHH
Q 022972 86 LTPREAGYAVQLSSKTLLDVRPSTERKKAWIKGSIWIPIFDIDDTFDAGSLPQKVTNFVMGGWWSGVPTL-SYNKQFLSK 164 (289)
Q Consensus 86 Is~~el~~~l~~~~~vlIDVRs~~Ey~~ghIPGAinIP~~~~~~~~~vgtlyk~~~~~~~~a~~~g~~~~-~~~~~f~~~ 164 (289)
||++|+.++++ ++.+|||||++.||..||||||+|||+.++.++...++++++.+.+.+. +.+...+ ...++++++
T Consensus 1 ~s~~el~~~l~-~~~~iiDvR~~~e~~~ghIpgAinip~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~ 77 (128)
T cd01520 1 ITAEDLLALRK-ADGPLIDVRSPKEFFEGHLPGAINLPLLDDEERALVGTLYKQQGREAAI--ELGLELVSGKLKRILNE 77 (128)
T ss_pred CCHHHHHHHHh-cCCEEEECCCHHHhccCcCCCcEEccCCChhHHHHhhhheeccCHHHHH--HHHHHHHhhhHHHHHHH
Confidence 68899999887 6789999999999999999999999998766554445555544322111 1111111 123455555
Q ss_pred HH-hcCCCCCcEEEEcC-CCCchHHHHHHHHHccCCCeeEccccHHHHHh
Q 022972 165 VE-EKLPKDTDLIVACQ-KGLRSLAACELLYNAGYRNLFWVQGGLEAAEE 212 (289)
Q Consensus 165 ~~-~~l~k~~~IVvyC~-~G~RS~~aa~~L~~~G~~nV~~L~GG~~aw~~ 212 (289)
+. ..++++++|||||+ +|.||..+++.|+.+|| +|+.|+||+.+|++
T Consensus 78 ~~~~~i~~~~~vvvyC~~~G~rs~~a~~~L~~~G~-~v~~L~GG~~aw~~ 126 (128)
T cd01520 78 AWEARLERDPKLLIYCARGGMRSQSLAWLLESLGI-DVPLLEGGYKAYRK 126 (128)
T ss_pred HHHhccCCCCeEEEEeCCCCccHHHHHHHHHHcCC-ceeEeCCcHHHHHh
Confidence 43 36889999999996 78999999999999999 59999999999976
No 5
>cd01533 4RHOD_Repeat_2 Member of the Rhodanese Homology Domain superfamily, repeat 2. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 2nd repeat which does contain the putative catalytic Cys residue.
Probab=99.87 E-value=2.3e-22 Score=160.30 Aligned_cols=99 Identities=23% Similarity=0.242 Sum_probs=84.0
Q ss_pred CCcceeCHHHHHHhhcCC-CcEEEEeCChhhhhhccCCCcEeeCCCCCcccccCCCCCccccccccCCccCCCCCCcccH
Q 022972 81 GKVKVLTPREAGYAVQLS-SKTLLDVRPSTERKKAWIKGSIWIPIFDIDDTFDAGSLPQKVTNFVMGGWWSGVPTLSYNK 159 (289)
Q Consensus 81 ~~~~~Is~~el~~~l~~~-~~vlIDVRs~~Ey~~ghIPGAinIP~~~~~~~~~vgtlyk~~~~~~~~a~~~g~~~~~~~~ 159 (289)
...+.++++++.++++.+ +.++||||++.||..+|||||+|+|+.++.+.
T Consensus 7 ~~~~~i~~~~l~~~~~~~~~~~liDvR~~~e~~~ghIpgainip~~~l~~~----------------------------- 57 (109)
T cd01533 7 RHTPSVSADELAALQARGAPLVVLDGRRFDEYRKMTIPGSVSCPGAELVLR----------------------------- 57 (109)
T ss_pred ccCCcCCHHHHHHHHhcCCCcEEEeCCCHHHHhcCcCCCceeCCHHHHHHH-----------------------------
Confidence 456789999999988755 57899999999999999999999998654321
Q ss_pred HHHHHHHhcC--CCCCcEEEEcCCCCchHHHHHHHHHccCCC-eeEccccHHHHHhCC
Q 022972 160 QFLSKVEEKL--PKDTDLIVACQKGLRSLAACELLYNAGYRN-LFWVQGGLEAAEEED 214 (289)
Q Consensus 160 ~f~~~~~~~l--~k~~~IVvyC~~G~RS~~aa~~L~~~G~~n-V~~L~GG~~aw~~~g 214 (289)
+ ..+ +++++||+||++|.||..+++.|+..||+| ++.|+||+.+|..+|
T Consensus 58 -----~-~~l~~~~~~~ivv~C~~G~rs~~a~~~L~~~G~~~~v~~l~gG~~~W~~~g 109 (109)
T cd01533 58 -----V-GELAPDPRTPIVVNCAGRTRSIIGAQSLINAGLPNPVAALRNGTQGWTLAG 109 (109)
T ss_pred -----H-HhcCCCCCCeEEEECCCCchHHHHHHHHHHCCCCcceeEecCCHHHHHhcC
Confidence 1 122 467899999999999999999999999988 999999999998764
No 6
>cd01527 RHOD_YgaP Member of the Rhodanese Homology Domain superfamily. This CD includes Escherichia coli YgaP, and similar uncharacterized putative rhodanese-related sulfurtransferases.
Probab=99.87 E-value=5.6e-22 Score=154.96 Aligned_cols=98 Identities=21% Similarity=0.365 Sum_probs=86.2
Q ss_pred ceeCHHHHHHhhcCCCcEEEEeCChhhhhhccCCCcEeeCCCCCcccccCCCCCccccccccCCccCCCCCCcccHHHHH
Q 022972 84 KVLTPREAGYAVQLSSKTLLDVRPSTERKKAWIKGSIWIPIFDIDDTFDAGSLPQKVTNFVMGGWWSGVPTLSYNKQFLS 163 (289)
Q Consensus 84 ~~Is~~el~~~l~~~~~vlIDVRs~~Ey~~ghIPGAinIP~~~~~~~~~vgtlyk~~~~~~~~a~~~g~~~~~~~~~f~~ 163 (289)
+.|+++|+.++++.+ .++||||+++||..+|||||+|+|+.++.+..
T Consensus 2 ~~i~~~el~~~~~~~-~~liDvR~~~e~~~~hi~ga~~ip~~~~~~~~-------------------------------- 48 (99)
T cd01527 2 TTISPNDACELLAQG-AVLVDIREPDEYLRERIPGARLVPLSQLESEG-------------------------------- 48 (99)
T ss_pred CccCHHHHHHHHHCC-CEEEECCCHHHHHhCcCCCCEECChhHhcccc--------------------------------
Confidence 468999999988765 89999999999999999999999987654321
Q ss_pred HHHhcCCCCCcEEEEcCCCCchHHHHHHHHHccCCCeeEccccHHHHHhCCCCc
Q 022972 164 KVEEKLPKDTDLIVACQKGLRSLAACELLYNAGYRNLFWVQGGLEAAEEEDLVR 217 (289)
Q Consensus 164 ~~~~~l~k~~~IVvyC~~G~RS~~aa~~L~~~G~~nV~~L~GG~~aw~~~gl~~ 217 (289)
..++++++||+||++|.||..++..|++.||+|++.|+||+.+|...++|+
T Consensus 49 ---~~~~~~~~iv~~c~~g~~s~~~~~~L~~~g~~~v~~l~gG~~~W~~~~~~~ 99 (99)
T cd01527 49 ---LPLVGANAIIFHCRSGMRTQQNAERLAAISAGEAYVLEGGLDAWKAAGLPV 99 (99)
T ss_pred ---cCCCCCCcEEEEeCCCchHHHHHHHHHHcCCccEEEeeCCHHHHHHCcCCC
Confidence 135788899999999999999999999999999999999999999988763
No 7
>PRK00162 glpE thiosulfate sulfurtransferase; Validated
Probab=99.87 E-value=4.1e-22 Score=158.60 Aligned_cols=103 Identities=18% Similarity=0.277 Sum_probs=90.3
Q ss_pred CcceeCHHHHHHhhcCCCcEEEEeCChhhhhhccCCCcEeeCCCCCcccccCCCCCccccccccCCccCCCCCCcccHHH
Q 022972 82 KVKVLTPREAGYAVQLSSKTLLDVRPSTERKKAWIKGSIWIPIFDIDDTFDAGSLPQKVTNFVMGGWWSGVPTLSYNKQF 161 (289)
Q Consensus 82 ~~~~Is~~el~~~l~~~~~vlIDVRs~~Ey~~ghIPGAinIP~~~~~~~~~vgtlyk~~~~~~~~a~~~g~~~~~~~~~f 161 (289)
..+.++++|+.+.++.++.++||||++.||..+|||||+|+|...+.+
T Consensus 3 ~~~~is~~el~~~l~~~~~~ivDvR~~~e~~~ghi~gA~~ip~~~l~~-------------------------------- 50 (108)
T PRK00162 3 QFECINVEQAHQKLQEGGAVLVDIRDPQSFAMGHAPGAFHLTNDSLGA-------------------------------- 50 (108)
T ss_pred CccccCHHHHHHHHHcCCCEEEEcCCHHHHhcCCCCCCeECCHHHHHH--------------------------------
Confidence 567899999999887777899999999999999999999999754321
Q ss_pred HHHHHhcCCCCCcEEEEcCCCCchHHHHHHHHHccCCCeeEccccHHHHHhCCCCccC
Q 022972 162 LSKVEEKLPKDTDLIVACQKGLRSLAACELLYNAGYRNLFWVQGGLEAAEEEDLVREG 219 (289)
Q Consensus 162 ~~~~~~~l~k~~~IVvyC~~G~RS~~aa~~L~~~G~~nV~~L~GG~~aw~~~gl~~~~ 219 (289)
....++++++++|||.+|.||..++..|+..||+|++.|+||+.+|++.++|.+.
T Consensus 51 ---~~~~~~~~~~ivv~c~~g~~s~~a~~~L~~~G~~~v~~l~GG~~~w~~~~~~~~~ 105 (108)
T PRK00162 51 ---FMRQADFDTPVMVMCYHGNSSQGAAQYLLQQGFDVVYSIDGGFEAWRRTFPAEVA 105 (108)
T ss_pred ---HHHhcCCCCCEEEEeCCCCCHHHHHHHHHHCCchheEEecCCHHHHHhcCCCccC
Confidence 1134678899999999999999999999999999999999999999999998764
No 8
>PLN02160 thiosulfate sulfurtransferase
Probab=99.87 E-value=1.5e-21 Score=162.64 Aligned_cols=116 Identities=27% Similarity=0.333 Sum_probs=95.8
Q ss_pred CcceeCHHHHHHhhcCCCcEEEEeCChhhhhhccCCCc--EeeCCCCCcccccCCCCCccccccccCCccCCCCCCcccH
Q 022972 82 KVKVLTPREAGYAVQLSSKTLLDVRPSTERKKAWIKGS--IWIPIFDIDDTFDAGSLPQKVTNFVMGGWWSGVPTLSYNK 159 (289)
Q Consensus 82 ~~~~Is~~el~~~l~~~~~vlIDVRs~~Ey~~ghIPGA--inIP~~~~~~~~~vgtlyk~~~~~~~~a~~~g~~~~~~~~ 159 (289)
.++.++++|+.+++++ +.++||||++.||..|||||| +|+|+..+.... ..+.+
T Consensus 13 ~~~~i~~~e~~~~~~~-~~~lIDVR~~~E~~~ghIpgA~~iniP~~~~~~~~-----------------------~l~~~ 68 (136)
T PLN02160 13 EVVSVDVSQAKTLLQS-GHQYLDVRTQDEFRRGHCEAAKIVNIPYMLNTPQG-----------------------RVKNQ 68 (136)
T ss_pred eeeEeCHHHHHHHHhC-CCEEEECCCHHHHhcCCCCCcceecccchhcCccc-----------------------ccCCH
Confidence 5778999999988864 468999999999999999999 899975432111 11234
Q ss_pred HHHHHHHhcCCCCCcEEEEcCCCCchHHHHHHHHHccCCCeeEccccHHHHHhCCCCccCCC
Q 022972 160 QFLSKVEEKLPKDTDLIVACQKGLRSLAACELLYNAGYRNLFWVQGGLEAAEEEDLVREGPQ 221 (289)
Q Consensus 160 ~f~~~~~~~l~k~~~IVvyC~~G~RS~~aa~~L~~~G~~nV~~L~GG~~aw~~~gl~~~~~~ 221 (289)
++..++...++++++||+||++|.||..++..|...||++|+.|.||+.+|++.|+|+.+..
T Consensus 69 ~~~~~~~~~~~~~~~IivyC~sG~RS~~Aa~~L~~~G~~~v~~l~GG~~~W~~~g~p~~~~~ 130 (136)
T PLN02160 69 EFLEQVSSLLNPADDILVGCQSGARSLKATTELVAAGYKKVRNKGGGYLAWVDHSFPINQEE 130 (136)
T ss_pred HHHHHHHhccCCCCcEEEECCCcHHHHHHHHHHHHcCCCCeeecCCcHHHHhhCCCCccccc
Confidence 56655554467889999999999999999999999999999999999999999999988533
No 9
>KOG1530 consensus Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]
Probab=99.86 E-value=1.3e-21 Score=159.49 Aligned_cols=115 Identities=29% Similarity=0.397 Sum_probs=102.2
Q ss_pred CCcceeCHHHHHHhhcCCCcEEEEeCChhhhhhccCCCcEeeCCCCCcccccCCCCCccccccccCCccCCCCCCcccHH
Q 022972 81 GKVKVLTPREAGYAVQLSSKTLLDVRPSTERKKAWIKGSIWIPIFDIDDTFDAGSLPQKVTNFVMGGWWSGVPTLSYNKQ 160 (289)
Q Consensus 81 ~~~~~Is~~el~~~l~~~~~vlIDVRs~~Ey~~ghIPGAinIP~~~~~~~~~vgtlyk~~~~~~~~a~~~g~~~~~~~~~ 160 (289)
..+..++.+++.++.+.++.++||||.|+||..||+|.+||||+..... .++.++++
T Consensus 20 ~~~~sv~~~qvk~L~~~~~~~llDVRepeEfk~gh~~~siNiPy~~~~~-----------------------~~~l~~~e 76 (136)
T KOG1530|consen 20 SNPQSVSVEQVKNLLQHPDVVLLDVREPEEFKQGHIPASINIPYMSRPG-----------------------AGALKNPE 76 (136)
T ss_pred CCcEEEEHHHHHHHhcCCCEEEEeecCHHHhhccCCcceEecccccccc-----------------------ccccCCHH
Confidence 5677999999999998888999999999999999999999999865432 24678999
Q ss_pred HHHHHHhcCC-CCCcEEEEcCCCCchHHHHHHHHHccCCCeeEccccHHHHHhCCCCcc
Q 022972 161 FLSKVEEKLP-KDTDLIVACQKGLRSLAACELLYNAGYRNLFWVQGGLEAAEEEDLVRE 218 (289)
Q Consensus 161 f~~~~~~~l~-k~~~IVvyC~~G~RS~~aa~~L~~~G~~nV~~L~GG~~aw~~~gl~~~ 218 (289)
|.+++....| .+++|||+|++|.||..|...|..+||+||..+.|||.+|.+.++|..
T Consensus 77 F~kqvg~~kp~~d~eiIf~C~SG~Rs~~A~~~l~s~Gyknv~ny~Gs~~~W~~k~~~~~ 135 (136)
T KOG1530|consen 77 FLKQVGSSKPPHDKEIIFGCASGVRSLKATKILVSAGYKNVGNYPGSYLAWVDKGGPKK 135 (136)
T ss_pred HHHHhcccCCCCCCcEEEEeccCcchhHHHHHHHHcCcccccccCccHHHHHHccCCCC
Confidence 9999987666 455999999999999999999999999999999999999999887753
No 10
>cd01523 RHOD_Lact_B Member of the Rhodanese Homology Domain superfamily. This CD includes predicted proteins with rhodanese-like domains found N-terminal of the metallo-beta-lactamase domain.
Probab=99.86 E-value=1.9e-21 Score=152.32 Aligned_cols=98 Identities=28% Similarity=0.401 Sum_probs=81.0
Q ss_pred eCHHHHHHhhcC-CCcEEEEeCChhhhhhccCCCcEeeCCCCCcccccCCCCCccccccccCCccCCCCCCcccHHHHHH
Q 022972 86 LTPREAGYAVQL-SSKTLLDVRPSTERKKAWIKGSIWIPIFDIDDTFDAGSLPQKVTNFVMGGWWSGVPTLSYNKQFLSK 164 (289)
Q Consensus 86 Is~~el~~~l~~-~~~vlIDVRs~~Ey~~ghIPGAinIP~~~~~~~~~vgtlyk~~~~~~~~a~~~g~~~~~~~~~f~~~ 164 (289)
|+++|+.++++. ++.+|||||++.||+.+|||||+|+|+.++.++. .+...+
T Consensus 1 is~~el~~~l~~~~~~~liDvR~~~e~~~ghi~ga~~ip~~~~~~~~---------------------------~~~~~~ 53 (100)
T cd01523 1 LDPEDLYARLLAGQPLFILDVRNESDYERWKIDGENNTPYFDPYFDF---------------------------LEIEED 53 (100)
T ss_pred CCHHHHHHHHHcCCCcEEEEeCCHHHHhhcccCCCcccccccchHHH---------------------------HHhhHH
Confidence 578899988866 3689999999999999999999999987654211 000122
Q ss_pred HHhcCCCCCcEEEEcCCCCchHHHHHHHHHccCCCeeEccccHHHHH
Q 022972 165 VEEKLPKDTDLIVACQKGLRSLAACELLYNAGYRNLFWVQGGLEAAE 211 (289)
Q Consensus 165 ~~~~l~k~~~IVvyC~~G~RS~~aa~~L~~~G~~nV~~L~GG~~aw~ 211 (289)
....++++++||+||++|.||..++..|+..||+ ++.|.||+.+|.
T Consensus 54 ~~~~~~~~~~ivv~C~~G~rs~~aa~~L~~~G~~-~~~l~GG~~~W~ 99 (100)
T cd01523 54 ILDQLPDDQEVTVICAKEGSSQFVAELLAERGYD-VDYLAGGMKAWS 99 (100)
T ss_pred HHhhCCCCCeEEEEcCCCCcHHHHHHHHHHcCce-eEEeCCcHHhhc
Confidence 2345788999999999999999999999999998 999999999996
No 11
>cd01522 RHOD_1 Member of the Rhodanese Homology Domain superfamily, subgroup 1. This CD includes the putative rhodanese-related sulfurtransferases of several uncharacterized proteins.
Probab=99.85 E-value=3.1e-21 Score=156.38 Aligned_cols=114 Identities=32% Similarity=0.440 Sum_probs=91.7
Q ss_pred eCHHHHHHhhcC-CCcEEEEeCChhhhh-hccCCCcEeeCCCCCcccccCCCCCccccccccCCccCCCCCCcccHHHHH
Q 022972 86 LTPREAGYAVQL-SSKTLLDVRPSTERK-KAWIKGSIWIPIFDIDDTFDAGSLPQKVTNFVMGGWWSGVPTLSYNKQFLS 163 (289)
Q Consensus 86 Is~~el~~~l~~-~~~vlIDVRs~~Ey~-~ghIPGAinIP~~~~~~~~~vgtlyk~~~~~~~~a~~~g~~~~~~~~~f~~ 163 (289)
||++|+.++++. ++.++||||++.||+ .+|||||+|+|..++... .+.+.+..
T Consensus 1 is~~el~~~l~~~~~~~vIDvR~~~e~~~~ghIpgA~~ip~~~~~~~-------------------------~~~~~~~~ 55 (117)
T cd01522 1 LTPAEAWALLQADPQAVLVDVRTEAEWKFVGGVPDAVHVAWQVYPDM-------------------------EINPNFLA 55 (117)
T ss_pred CCHHHHHHHHHhCCCeEEEECCCHHHHhcccCCCCceecchhhcccc-------------------------ccCHHHHH
Confidence 688999998877 578999999999999 999999999998765321 11234555
Q ss_pred HHHhcCCCCCcEEEEcCCCCchHHHHHHHHHccCCCeeEccccHHHHHhCCCCccCCCCCc
Q 022972 164 KVEEKLPKDTDLIVACQKGLRSLAACELLYNAGYRNLFWVQGGLEAAEEEDLVREGPQPLK 224 (289)
Q Consensus 164 ~~~~~l~k~~~IVvyC~~G~RS~~aa~~L~~~G~~nV~~L~GG~~aw~~~gl~~~~~~~~~ 224 (289)
++....+++++||+||++|.||..++..|+..||+|++.+.|||++|+..-....+..++.
T Consensus 56 ~l~~~~~~~~~ivv~C~~G~rs~~aa~~L~~~G~~~v~~l~gG~~~~~~~~~~~~~~~~~~ 116 (117)
T cd01522 56 ELEEKVGKDRPVLLLCRSGNRSIAAAEAAAQAGFTNVYNVLEGFEGDLDAAGHRGGVNGWR 116 (117)
T ss_pred HHHhhCCCCCeEEEEcCCCccHHHHHHHHHHCCCCeEEECcCceecCCCCCCcccccCCCC
Confidence 5554457889999999999999999999999999999999999999988644333344443
No 12
>cd01519 RHOD_HSP67B2 Member of the Rhodanese Homology Domain superfamily. This CD includes the heat shock protein 67B2 of Drosophila melanogaster and other similar proteins, many of which are uncharacterized.
Probab=99.84 E-value=7.8e-21 Score=149.75 Aligned_cols=102 Identities=31% Similarity=0.372 Sum_probs=82.1
Q ss_pred CHHHHHHhhc-CCCcEEEEeCChhhhhhccCCCcEeeCCCCCcccccCCCCCccccccccCCccCCCCCCcccHHHHHHH
Q 022972 87 TPREAGYAVQ-LSSKTLLDVRPSTERKKAWIKGSIWIPIFDIDDTFDAGSLPQKVTNFVMGGWWSGVPTLSYNKQFLSKV 165 (289)
Q Consensus 87 s~~el~~~l~-~~~~vlIDVRs~~Ey~~ghIPGAinIP~~~~~~~~~vgtlyk~~~~~~~~a~~~g~~~~~~~~~f~~~~ 165 (289)
|++++.++++ .++.+|||||++.||..||||||+|+|+.++.+.. .....+|.+.+
T Consensus 2 ~~~~~~~~l~~~~~~~iiDvR~~~e~~~ghIpgA~~ip~~~~~~~~-----------------------~~~~~~~~~~~ 58 (106)
T cd01519 2 SFEEVKNLPNPHPNKVLIDVREPEELKTGKIPGAINIPLSSLPDAL-----------------------ALSEEEFEKKY 58 (106)
T ss_pred cHHHHHHhcCCCCCEEEEECCCHHHHhcCcCCCcEEechHHhhhhh-----------------------CCCHHHHHHHh
Confidence 6788888887 66799999999999999999999999987653211 11122444433
Q ss_pred Hhc-CCCCCcEEEEcCCCCchHHHHHHHHHccCCCeeEccccHHHHH
Q 022972 166 EEK-LPKDTDLIVACQKGLRSLAACELLYNAGYRNLFWVQGGLEAAE 211 (289)
Q Consensus 166 ~~~-l~k~~~IVvyC~~G~RS~~aa~~L~~~G~~nV~~L~GG~~aw~ 211 (289)
... ++++++||+||++|.||..+++.|+.+||+||+.++||+.+|.
T Consensus 59 ~~~~~~~~~~ivv~c~~g~~s~~~~~~l~~~G~~~v~~~~Gg~~~W~ 105 (106)
T cd01519 59 GFPKPSKDKELIFYCKAGVRSKAAAELARSLGYENVGNYPGSWLDWA 105 (106)
T ss_pred cccCCCCCCeEEEECCCcHHHHHHHHHHHHcCCccceecCCcHHHHc
Confidence 322 4578899999999999999999999999999999999999996
No 13
>cd01526 RHOD_ThiF Member of the Rhodanese Homology Domain superfamily. This CD includes several putative molybdopterin synthase sulfurylases including the molybdenum cofactor biosynthetic protein (CnxF) of Aspergillus nidulans and the molybdenum cofactor synthesis protein 3 (MOCS3) of Homo sapiens. These rhodanese-like domains are found C-terminal of the ThiF and MoeZ_MoeB domains.
Probab=99.84 E-value=8e-21 Score=154.68 Aligned_cols=111 Identities=23% Similarity=0.286 Sum_probs=88.1
Q ss_pred CCcceeCHHHHHHhhcC-CCcEEEEeCChhhhhhccCCCcEeeCCCCCcccccCCCCCccccccccCCccCCCCCCcccH
Q 022972 81 GKVKVLTPREAGYAVQL-SSKTLLDVRPSTERKKAWIKGSIWIPIFDIDDTFDAGSLPQKVTNFVMGGWWSGVPTLSYNK 159 (289)
Q Consensus 81 ~~~~~Is~~el~~~l~~-~~~vlIDVRs~~Ey~~ghIPGAinIP~~~~~~~~~vgtlyk~~~~~~~~a~~~g~~~~~~~~ 159 (289)
.....|+++|+.++++. ++.+|||||++.||+.+|||||+|||+..+.++.. .+.
T Consensus 5 ~~~~~is~~el~~~~~~~~~~~ivDvR~~~e~~~~hIpgai~ip~~~~~~~~~--~~~---------------------- 60 (122)
T cd01526 5 SPEERVSVKDYKNILQAGKKHVLLDVRPKVHFEICRLPEAINIPLSELLSKAA--ELK---------------------- 60 (122)
T ss_pred CcccccCHHHHHHHHhCCCCeEEEEcCCHHHhhcccCCCCeEccHHHHhhhhh--hhh----------------------
Confidence 45668999999998876 57889999999999999999999999876543210 000
Q ss_pred HHHHHHHhcCCCCCcEEEEcCCCCchHHHHHHHHHccC-CCeeEccccHHHHHhCCCC
Q 022972 160 QFLSKVEEKLPKDTDLIVACQKGLRSLAACELLYNAGY-RNLFWVQGGLEAAEEEDLV 216 (289)
Q Consensus 160 ~f~~~~~~~l~k~~~IVvyC~~G~RS~~aa~~L~~~G~-~nV~~L~GG~~aw~~~gl~ 216 (289)
.. ......++++++|++||++|.||..++..|+..|| ++++.++||+.+|.++..+
T Consensus 61 ~~-~~~~~~~~~~~~ivv~C~~G~rs~~aa~~L~~~G~~~~v~~l~GG~~~W~~~~~~ 117 (122)
T cd01526 61 SL-QELPLDNDKDSPIYVVCRRGNDSQTAVRKLKELGLERFVRDIIGGLKAWADKVDP 117 (122)
T ss_pred hh-hhcccccCCCCcEEEECCCCCcHHHHHHHHHHcCCccceeeecchHHHHHHHhCc
Confidence 00 00011357889999999999999999999999999 7899999999999986544
No 14
>cd01534 4RHOD_Repeat_3 Member of the Rhodanese Homology Domain superfamily, repeat 3. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 3rd repeat which does not contain the putative catalytic Cys residue.
Probab=99.83 E-value=7.1e-21 Score=148.06 Aligned_cols=91 Identities=19% Similarity=0.248 Sum_probs=75.6
Q ss_pred eCHHHHHHhhcCC--CcEEEEeCChhhhhhccCCCcEeeCCCCCcccccCCCCCccccccccCCccCCCCCCcccHHHHH
Q 022972 86 LTPREAGYAVQLS--SKTLLDVRPSTERKKAWIKGSIWIPIFDIDDTFDAGSLPQKVTNFVMGGWWSGVPTLSYNKQFLS 163 (289)
Q Consensus 86 Is~~el~~~l~~~--~~vlIDVRs~~Ey~~ghIPGAinIP~~~~~~~~~vgtlyk~~~~~~~~a~~~g~~~~~~~~~f~~ 163 (289)
||++|+.++++.+ +.++||||++.||+.+|||||+|+|..++....
T Consensus 1 is~~~l~~~~~~~~~~~~liDvR~~~e~~~ghipga~~ip~~~l~~~~-------------------------------- 48 (95)
T cd01534 1 IGAAELARWAAEGDRTVYRFDVRTPEEYEAGHLPGFRHTPGGQLVQET-------------------------------- 48 (95)
T ss_pred CCHHHHHHHHHcCCCCeEEEECCCHHHHHhCCCCCcEeCCHHHHHHHH--------------------------------
Confidence 5788999888654 578999999999999999999999975432211
Q ss_pred HHHhcC-CCCCcEEEEcCCCCchHHHHHHHHHccCCCeeEccccHHHHH
Q 022972 164 KVEEKL-PKDTDLIVACQKGLRSLAACELLYNAGYRNLFWVQGGLEAAE 211 (289)
Q Consensus 164 ~~~~~l-~k~~~IVvyC~~G~RS~~aa~~L~~~G~~nV~~L~GG~~aw~ 211 (289)
.... .++++||+||++|.||..++..|+.+||+ |+.|+||+.+|+
T Consensus 49 --~~~~~~~~~~iv~~c~~G~rs~~aa~~L~~~G~~-v~~l~GG~~~W~ 94 (95)
T cd01534 49 --DHFAPVRGARIVLADDDGVRADMTASWLAQMGWE-VYVLEGGLAAAL 94 (95)
T ss_pred --HHhcccCCCeEEEECCCCChHHHHHHHHHHcCCE-EEEecCcHHHhc
Confidence 0111 24678999999999999999999999998 999999999996
No 15
>cd01444 GlpE_ST GlpE sulfurtransferase (ST) and homologs are members of the Rhodanese Homology Domain superfamily. Unlike other rhodanese sulfurtransferases, GlpE is a single domain protein but indications are that it functions as a dimer. The active site contains a catalytically active cysteine.
Probab=99.83 E-value=9.2e-21 Score=146.59 Aligned_cols=92 Identities=26% Similarity=0.355 Sum_probs=80.3
Q ss_pred eeCHHHHHHhhcC-CCcEEEEeCChhhhhh--ccCCCcEeeCCCCCcccccCCCCCccccccccCCccCCCCCCcccHHH
Q 022972 85 VLTPREAGYAVQL-SSKTLLDVRPSTERKK--AWIKGSIWIPIFDIDDTFDAGSLPQKVTNFVMGGWWSGVPTLSYNKQF 161 (289)
Q Consensus 85 ~Is~~el~~~l~~-~~~vlIDVRs~~Ey~~--ghIPGAinIP~~~~~~~~~vgtlyk~~~~~~~~a~~~g~~~~~~~~~f 161 (289)
.|+++++.++++. ++.++||||++.||.. +|||||+|+|+.++.+.
T Consensus 1 ~i~~~~~~~~~~~~~~~~ivDvR~~~e~~~~~~hi~ga~~ip~~~~~~~------------------------------- 49 (96)
T cd01444 1 RISVDELAELLAAGEAPVLLDVRDPASYAALPDHIPGAIHLDEDSLDDW------------------------------- 49 (96)
T ss_pred CcCHHHHHHHHhcCCCcEEEECCCHHHHhcccCCCCCCeeCCHHHHHHH-------------------------------
Confidence 3688899888776 4689999999999999 99999999998654321
Q ss_pred HHHHHhcCCCCCcEEEEcCCCCchHHHHHHHHHccCCCeeEccccHHHHH
Q 022972 162 LSKVEEKLPKDTDLIVACQKGLRSLAACELLYNAGYRNLFWVQGGLEAAE 211 (289)
Q Consensus 162 ~~~~~~~l~k~~~IVvyC~~G~RS~~aa~~L~~~G~~nV~~L~GG~~aw~ 211 (289)
...++++++|||||++|.||..+++.|+..||+|++.|+||+.+|.
T Consensus 50 ----~~~~~~~~~ivv~c~~g~~s~~a~~~l~~~G~~~v~~l~gG~~~w~ 95 (96)
T cd01444 50 ----LGDLDRDRPVVVYCYHGNSSAQLAQALREAGFTDVRSLAGGFEAWR 95 (96)
T ss_pred ----HhhcCCCCCEEEEeCCCChHHHHHHHHHHcCCceEEEcCCCHHHhc
Confidence 1356889999999999999999999999999999999999999996
No 16
>cd01447 Polysulfide_ST Polysulfide-sulfurtransferase - Rhodanese Homology Domain. This domain is believed to serve as a polysulfide binding and transferase domain in anaerobic gram-negative bacteria, functioning in oxidative phosphorylation with polysulfide-sulfur as a terminal electron acceptor. The active site contains the same conserved cysteine that is the catalytic residue in other Rhodanese Homology Domain proteins.
Probab=99.83 E-value=1.6e-20 Score=146.83 Aligned_cols=102 Identities=23% Similarity=0.378 Sum_probs=81.2
Q ss_pred eCHHHHHHhhcCCCcEEEEeCChhhh-hhccCCCcEeeCCCCCcccccCCCCCccccccccCCccCCCCCCcccHHHHHH
Q 022972 86 LTPREAGYAVQLSSKTLLDVRPSTER-KKAWIKGSIWIPIFDIDDTFDAGSLPQKVTNFVMGGWWSGVPTLSYNKQFLSK 164 (289)
Q Consensus 86 Is~~el~~~l~~~~~vlIDVRs~~Ey-~~ghIPGAinIP~~~~~~~~~vgtlyk~~~~~~~~a~~~g~~~~~~~~~f~~~ 164 (289)
|+++|+.+++++++.++||||++.|| ..||||||+|+|...+....+.. . .+
T Consensus 1 is~~el~~~~~~~~~~iiDvR~~~~~~~~ghIpga~~ip~~~~~~~~~~~-------------------~-----~~--- 53 (103)
T cd01447 1 LSPEDARALLGSPGVLLVDVRDPRELERTGMIPGAFHAPRGMLEFWADPD-------------------S-----PY--- 53 (103)
T ss_pred CCHHHHHHHHhCCCeEEEECCCHHHHHhcCCCCCcEEcccchhhhhcCcc-------------------c-----cc---
Confidence 57899998887778899999999998 57999999999976543211100 0 00
Q ss_pred HHhcCCCCCcEEEEcCCCCchHHHHHHHHHccCCCeeEccccHHHHHhCC
Q 022972 165 VEEKLPKDTDLIVACQKGLRSLAACELLYNAGYRNLFWVQGGLEAAEEED 214 (289)
Q Consensus 165 ~~~~l~k~~~IVvyC~~G~RS~~aa~~L~~~G~~nV~~L~GG~~aw~~~g 214 (289)
....++++++|||||++|.||..+++.|+.+||+||+.|+||+.+|...|
T Consensus 54 ~~~~~~~~~~ivv~c~~g~~s~~~~~~l~~~G~~~v~~l~Gg~~~w~~~g 103 (103)
T cd01447 54 HKPAFAEDKPFVFYCASGWRSALAGKTLQDMGLKPVYNIEGGFKDWKEAG 103 (103)
T ss_pred cccCCCCCCeEEEEcCCCCcHHHHHHHHHHcChHHhEeecCcHHHHhhcC
Confidence 00136788999999999999999999999999999999999999997653
No 17
>PF00581 Rhodanese: Rhodanese-like domain This Prosite entry represents a subset of this family.; InterPro: IPR001763 Rhodanese, a sulphurtransferase involved in cyanide detoxification (see IPR001307 from INTERPRO) shares evolutionary relationship with a large family of proteins [], including Cdc25 phosphatase catalytic domain. non-catalytic domains of eukaryotic dual-specificity MAPK-phosphatases. non-catalytic domains of yeast PTP-type MAPK-phosphatases. non-catalytic domains of yeast Ubp4, Ubp5, Ubp7. non-catalytic domains of mammalian Ubp-Y. Drosophila heat shock protein HSP-67BB. several bacterial cold-shock and phage shock proteins. plant senescence associated proteins. catalytic and non-catalytic domains of rhodanese (see IPR001307 from INTERPRO). Rhodanese has an internal duplication. This domain is found as a single copy in other proteins, including phosphatases and ubiquitin C-terminal hydrolases [].; PDB: 2J6P_D 2FSX_A 1UAR_A 1OKG_A 1GMX_A 1GN0_A 3NTD_B 3NTA_B 3NT6_A 1C25_A ....
Probab=99.83 E-value=2.5e-20 Score=146.84 Aligned_cols=107 Identities=29% Similarity=0.477 Sum_probs=84.7
Q ss_pred CHHHHHHhhcCCCcEEEEeCChhhhhhccCCCcEeeCCCCCcccccCCCCCccccccccCCccCCCCCCcccHHHHHHHH
Q 022972 87 TPREAGYAVQLSSKTLLDVRPSTERKKAWIKGSIWIPIFDIDDTFDAGSLPQKVTNFVMGGWWSGVPTLSYNKQFLSKVE 166 (289)
Q Consensus 87 s~~el~~~l~~~~~vlIDVRs~~Ey~~ghIPGAinIP~~~~~~~~~vgtlyk~~~~~~~~a~~~g~~~~~~~~~f~~~~~ 166 (289)
||+|+.++++.++.+|||+|++.||..+|||||+|+|...+..+. .........+......
T Consensus 1 s~~el~~~l~~~~~~liD~R~~~~~~~~hI~ga~~i~~~~~~~~~-------------------~~~~~~~~~~~~~~~~ 61 (113)
T PF00581_consen 1 SPEELKEMLENESVLLIDVRSPEEYERGHIPGAVNIPFPSLDPDE-------------------PSLSEDKLDEFLKELG 61 (113)
T ss_dssp -HHHHHHHHTTTTEEEEEESSHHHHHHSBETTEEEEEGGGGSSSS-------------------SBCHHHHHHHHHHHHT
T ss_pred CHHHHHhhhhCCCeEEEEeCCHHHHHcCCCCCCcccccccccccc-------------------cccccccccccccccc
Confidence 689999998667899999999999999999999999997641100 0011223345555555
Q ss_pred hcCCCCCcEEEEcCCCCchHHHHHH-----HHHccCCCeeEccccHHHHHh
Q 022972 167 EKLPKDTDLIVACQKGLRSLAACEL-----LYNAGYRNLFWVQGGLEAAEE 212 (289)
Q Consensus 167 ~~l~k~~~IVvyC~~G~RS~~aa~~-----L~~~G~~nV~~L~GG~~aw~~ 212 (289)
..++++++||+||++|.++..++.. |..+||++|++|+|||++|.+
T Consensus 62 ~~~~~~~~iv~yc~~~~~~~~~~~~~~~~~l~~~g~~~v~~l~GG~~~w~~ 112 (113)
T PF00581_consen 62 KKIDKDKDIVFYCSSGWRSGSAAAARVAWILKKLGFKNVYILDGGFEAWKA 112 (113)
T ss_dssp HGSTTTSEEEEEESSSCHHHHHHHHHHHHHHHHTTTSSEEEETTHHHHHHH
T ss_pred ccccccccceeeeecccccchhHHHHHHHHHHHcCCCCEEEecChHHHHhc
Confidence 5678888999999999998887777 999999999999999999986
No 18
>cd01525 RHOD_Kc Member of the Rhodanese Homology Domain superfamily. Included in this CD are the rhodanese-like domains found C-terminal of the serine/threonine protein kinases catalytic (S_TKc) domain and the Tre-2, BUB2p, Cdc16p (TBC) domain. The putative active site Cys residue is not present in this CD.
Probab=99.82 E-value=2.1e-20 Score=147.26 Aligned_cols=102 Identities=18% Similarity=0.251 Sum_probs=78.0
Q ss_pred eCHHHHHHhhcCC--CcEEEEeCChhhhhhccCCCcEeeCCCCCcccccCCCCCccccccccCCccCCCCCCcccHHHHH
Q 022972 86 LTPREAGYAVQLS--SKTLLDVRPSTERKKAWIKGSIWIPIFDIDDTFDAGSLPQKVTNFVMGGWWSGVPTLSYNKQFLS 163 (289)
Q Consensus 86 Is~~el~~~l~~~--~~vlIDVRs~~Ey~~ghIPGAinIP~~~~~~~~~vgtlyk~~~~~~~~a~~~g~~~~~~~~~f~~ 163 (289)
||++|+.+++..+ +.+|||||++.||..||||||+|+|+.++..... ....... . .
T Consensus 1 is~~~l~~~l~~~~~~~~liDvR~~~e~~~ghIpgA~~ip~~~~~~~~~------------------~~~~~~~-~---~ 58 (105)
T cd01525 1 ISVYDVIRLLDNSPAKLAAVDIRSSPDFRRGHIEGSINIPFSSVFLKEG------------------ELEQLPT-V---P 58 (105)
T ss_pred CCHHHHHHHHhCCCCCeEEEECCCHHHHhCCccCCCEeCCHHHhccccc------------------ccccccc-h---H
Confidence 6889999988653 6799999999999999999999999865432100 0000000 1 1
Q ss_pred HHHhcCCCCCcEEEEcCCCCchHHHHHHHHHccCCCeeEccccHHHHH
Q 022972 164 KVEEKLPKDTDLIVACQKGLRSLAACELLYNAGYRNLFWVQGGLEAAE 211 (289)
Q Consensus 164 ~~~~~l~k~~~IVvyC~~G~RS~~aa~~L~~~G~~nV~~L~GG~~aw~ 211 (289)
++. . .++++||+||++|.||..+++.|+.+||+||+.|+||+.+|+
T Consensus 59 ~~~-~-~~~~~vv~~c~~g~~s~~~a~~L~~~G~~~v~~l~GG~~a~~ 104 (105)
T cd01525 59 RLE-N-YKGKIIVIVSHSHKHAALFAAFLVKCGVPRVCILDGGINALK 104 (105)
T ss_pred HHH-h-hcCCeEEEEeCCCccHHHHHHHHHHcCCCCEEEEeCcHHHhc
Confidence 111 1 246799999999999999999999999999999999999995
No 19
>cd01528 RHOD_2 Member of the Rhodanese Homology Domain superfamily, subgroup 2. Subgroup 2 includes uncharacterized putative rhodanese-related domains.
Probab=99.82 E-value=1.5e-20 Score=147.66 Aligned_cols=96 Identities=26% Similarity=0.467 Sum_probs=80.3
Q ss_pred eCHHHHHHhhcCC--CcEEEEeCChhhhhhccCCCcEeeCCCCCcccccCCCCCccccccccCCccCCCCCCcccHHHHH
Q 022972 86 LTPREAGYAVQLS--SKTLLDVRPSTERKKAWIKGSIWIPIFDIDDTFDAGSLPQKVTNFVMGGWWSGVPTLSYNKQFLS 163 (289)
Q Consensus 86 Is~~el~~~l~~~--~~vlIDVRs~~Ey~~ghIPGAinIP~~~~~~~~~vgtlyk~~~~~~~~a~~~g~~~~~~~~~f~~ 163 (289)
|+++|+.++++.+ +.++||||++.||..+|||||+|+|+..+.+ +..
T Consensus 2 i~~~~l~~~~~~~~~~~~iiDvR~~~e~~~~hI~ga~~ip~~~~~~-------------------------------~~~ 50 (101)
T cd01528 2 ISVAELAEWLADEREEPVLIDVREPEELEIAFLPGFLHLPMSEIPE-------------------------------RSK 50 (101)
T ss_pred CCHHHHHHHHhcCCCCCEEEECCCHHHHhcCcCCCCEecCHHHHHH-------------------------------HHH
Confidence 7899999988764 6899999999999999999999999865432 112
Q ss_pred HHHhcCCCCCcEEEEcCCCCchHHHHHHHHHccCCCeeEccccHHHHHhC
Q 022972 164 KVEEKLPKDTDLIVACQKGLRSLAACELLYNAGYRNLFWVQGGLEAAEEE 213 (289)
Q Consensus 164 ~~~~~l~k~~~IVvyC~~G~RS~~aa~~L~~~G~~nV~~L~GG~~aw~~~ 213 (289)
.+. ..++++++|+||++|.||..++..|.+.||++++.|+||+.+|.+.
T Consensus 51 ~~~-~~~~~~~vv~~c~~g~rs~~~~~~l~~~G~~~v~~l~GG~~~w~~~ 99 (101)
T cd01528 51 ELD-SDNPDKDIVVLCHHGGRSMQVAQWLLRQGFENVYNLQGGIDAWSLE 99 (101)
T ss_pred Hhc-ccCCCCeEEEEeCCCchHHHHHHHHHHcCCccEEEecCCHHHHhhh
Confidence 221 1246889999999999999999999999999999999999999753
No 20
>TIGR03865 PQQ_CXXCW PQQ-dependent catabolism-associated CXXCW motif protein. Members of this protein family have a CXXXCW motif, consistent with a possible role in redox cofactor binding. This protein family shows strong relationships by phylogenetic profiling and conserved gene neighborhoods with a transport system for alcohols metabolized by PQQ-dependent enzymes.
Probab=99.82 E-value=6.6e-20 Score=157.16 Aligned_cols=114 Identities=23% Similarity=0.356 Sum_probs=88.7
Q ss_pred CCcceeCHHHHHHhhcCCCcEEEEeCChh----hhhhc---------cCCCcEeeCCCCCcccccCCCCCccccccccCC
Q 022972 81 GKVKVLTPREAGYAVQLSSKTLLDVRPST----ERKKA---------WIKGSIWIPIFDIDDTFDAGSLPQKVTNFVMGG 147 (289)
Q Consensus 81 ~~~~~Is~~el~~~l~~~~~vlIDVRs~~----Ey~~g---------hIPGAinIP~~~~~~~~~vgtlyk~~~~~~~~a 147 (289)
.....|+++|+.+++++++.+|||||++. ||..| |||||+|+|.....+-.
T Consensus 33 ~~~~~vs~~el~~~l~~~~~~lIDVR~~~~~~~e~~~G~~~~~~~~~HIPGAv~ip~~~~~~l~---------------- 96 (162)
T TIGR03865 33 KGARVLDTEAAQALLARGPVALIDVYPRPPKPKNLLEGTVWRDEPRLNIPGSLWLPNTGYGNLA---------------- 96 (162)
T ss_pred CCccccCHHHHHHHHhCCCcEEEECCCCccccccccccceeccccCCCCCCcEEecccCCCCCC----------------
Confidence 56789999999999988889999999876 56544 99999999964322100
Q ss_pred ccCCCCCCcccHHHHHHHHhc--CCCCCcEEEEcCCCC-chHHHHHHHHHccCCCeeEccccHHHHHhCCCCc
Q 022972 148 WWSGVPTLSYNKQFLSKVEEK--LPKDTDLIVACQKGL-RSLAACELLYNAGYRNLFWVQGGLEAAEEEDLVR 217 (289)
Q Consensus 148 ~~~g~~~~~~~~~f~~~~~~~--l~k~~~IVvyC~~G~-RS~~aa~~L~~~G~~nV~~L~GG~~aw~~~gl~~ 217 (289)
....+.|.+.+.+. .+++++||+||++|. ||..+++.|+.+||+||++|+||+.+|+++|+|+
T Consensus 97 -------~~~~~~~~~~l~~~~~~~~d~~IVvYC~~G~~~S~~aa~~L~~~G~~~V~~l~GG~~aW~~aG~Pv 162 (162)
T TIGR03865 97 -------PAWQAYFRRGLERATGGDKDRPLVFYCLADCWMSWNAAKRALAYGYSNVYWYPDGTDGWQAAGLPL 162 (162)
T ss_pred -------CchhHHHHHHHHHhcCCCCCCEEEEEECCCCHHHHHHHHHHHhcCCcceEEecCCHHHHHHcCCCC
Confidence 00112344444322 368899999999887 8999999999999999999999999999999974
No 21
>cd01448 TST_Repeat_1 Thiosulfate sulfurtransferase (TST), N-terminal, inactive domain. TST contains 2 copies of the Rhodanese Homology Domain; this is the 1st repeat, which does not contain the catalytically active Cys residue. The role of the 1st repeat is uncertain, but it is believed to be involved in protein interaction.
Probab=99.82 E-value=9.2e-20 Score=147.61 Aligned_cols=111 Identities=21% Similarity=0.215 Sum_probs=87.7
Q ss_pred eCHHHHHHhhcCCCcEEEEeCCh-------hhhhhccCCCcEeeCCCCCcccccCCCCCccccccccCCccCCCCCCccc
Q 022972 86 LTPREAGYAVQLSSKTLLDVRPS-------TERKKAWIKGSIWIPIFDIDDTFDAGSLPQKVTNFVMGGWWSGVPTLSYN 158 (289)
Q Consensus 86 Is~~el~~~l~~~~~vlIDVRs~-------~Ey~~ghIPGAinIP~~~~~~~~~vgtlyk~~~~~~~~a~~~g~~~~~~~ 158 (289)
++++++.+++++++.+|||+|++ .||..+|||||+|+|+.++..+. ....++.++
T Consensus 2 i~~~~l~~~l~~~~~~ivDvR~~~~~~~~~~~~~~ghI~ga~~i~~~~~~~~~------------------~~~~~~~~~ 63 (122)
T cd01448 2 VSPDWLAEHLDDPDVRILDARWYLPDRDGRKEYLEGHIPGAVFFDLDEDLDDK------------------SPGPHMLPS 63 (122)
T ss_pred cCHHHHHHHhCCCCeEEEEeecCCCCCchhhHHhhCCCCCCEEcChhhccccC------------------CCCCCCCCC
Confidence 78999999887777899999999 99999999999999988765421 011122333
Q ss_pred H-HHHHHHHh-cCCCCCcEEEEcCC-CCchHHHHHHHHHccCCCeeEccccHHHHHhCC
Q 022972 159 K-QFLSKVEE-KLPKDTDLIVACQK-GLRSLAACELLYNAGYRNLFWVQGGLEAAEEED 214 (289)
Q Consensus 159 ~-~f~~~~~~-~l~k~~~IVvyC~~-G~RS~~aa~~L~~~G~~nV~~L~GG~~aw~~~g 214 (289)
+ ++.+.+.. .++++++||+||++ |.+|..+++.|+.+||+||+.|+||+.+|.+.|
T Consensus 64 ~~~~~~~~~~~~~~~~~~vv~~c~~g~~~a~~~~~~l~~~G~~~v~~l~GG~~~W~~~g 122 (122)
T cd01448 64 PEEFAELLGSLGISNDDTVVVYDDGGGFFAARAWWTLRYFGHENVRVLDGGLQAWKAEG 122 (122)
T ss_pred HHHHHHHHHHcCCCCCCEEEEECCCCCccHHHHHHHHHHcCCCCEEEecCCHHHHHhCc
Confidence 3 33333332 36788999999988 589999999999999999999999999998754
No 22
>cd01521 RHOD_PspE2 Member of the Rhodanese Homology Domain superfamily. This CD includes the putative rhodanese-like protein, Psp2, of Yersinia pestis biovar Medievalis and other similar uncharacterized proteins.
Probab=99.82 E-value=3.1e-20 Score=148.45 Aligned_cols=99 Identities=21% Similarity=0.258 Sum_probs=84.1
Q ss_pred ceeCHHHHHHhhcC--CCcEEEEeCChhhhhhccCCCcEeeCCCCCcccccCCCCCccccccccCCccCCCCCCcccHHH
Q 022972 84 KVLTPREAGYAVQL--SSKTLLDVRPSTERKKAWIKGSIWIPIFDIDDTFDAGSLPQKVTNFVMGGWWSGVPTLSYNKQF 161 (289)
Q Consensus 84 ~~Is~~el~~~l~~--~~~vlIDVRs~~Ey~~ghIPGAinIP~~~~~~~~~vgtlyk~~~~~~~~a~~~g~~~~~~~~~f 161 (289)
..++++|+.+++.. ++.++||||++.||..+|||||+|+|...+..+
T Consensus 8 ~~~s~~el~~~l~~~~~~~~iiDvR~~~e~~~ghIpgA~~ip~~~l~~~------------------------------- 56 (110)
T cd01521 8 FETDCWDVAIALKNGKPDFVLVDVRSAEAYARGHVPGAINLPHREICEN------------------------------- 56 (110)
T ss_pred eecCHHHHHHHHHcCCCCEEEEECCCHHHHhcCCCCCCEeCCHHHhhhH-------------------------------
Confidence 47899999998865 358999999999999999999999998654311
Q ss_pred HHHHHhcCCCCCcEEEEcCCC--CchHHHHHHHHHccCCCeeEccccHHHHHhCCCCc
Q 022972 162 LSKVEEKLPKDTDLIVACQKG--LRSLAACELLYNAGYRNLFWVQGGLEAAEEEDLVR 217 (289)
Q Consensus 162 ~~~~~~~l~k~~~IVvyC~~G--~RS~~aa~~L~~~G~~nV~~L~GG~~aw~~~gl~~ 217 (289)
....++++++||+||++| .+|..+++.|+.+||+ ++.|+||+.+|...|+|+
T Consensus 57 ---~~~~i~~~~~vvvyc~~g~~~~s~~~a~~l~~~G~~-v~~l~GG~~~W~~~g~~~ 110 (110)
T cd01521 57 ---ATAKLDKEKLFVVYCDGPGCNGATKAALKLAELGFP-VKEMIGGLDWWKREGYAT 110 (110)
T ss_pred ---hhhcCCCCCeEEEEECCCCCchHHHHHHHHHHcCCe-EEEecCCHHHHHHCCCCC
Confidence 113578899999999877 4899999999999995 999999999999998874
No 23
>cd01524 RHOD_Pyr_redox Member of the Rhodanese Homology Domain superfamily. Included in this CD are the Lactococcus lactis NADH oxidase, Bacillus cereus NADH dehydrogenase, and Bacteroides thetaiotaomicron pyridine nucleotide-disulphide oxidoreductase, and similar rhodanese-like domains found C-terminal of the pyridine nucleotide-disulphide oxidoreductase (Pyr-redox) domain and the Pyr-redox dimerization domain.
Probab=99.82 E-value=2.4e-20 Score=143.73 Aligned_cols=89 Identities=34% Similarity=0.543 Sum_probs=77.0
Q ss_pred eCHHHHHHhhcCCCcEEEEeCChhhhhhccCCCcEeeCCCCCcccccCCCCCccccccccCCccCCCCCCcccHHHHHHH
Q 022972 86 LTPREAGYAVQLSSKTLLDVRPSTERKKAWIKGSIWIPIFDIDDTFDAGSLPQKVTNFVMGGWWSGVPTLSYNKQFLSKV 165 (289)
Q Consensus 86 Is~~el~~~l~~~~~vlIDVRs~~Ey~~ghIPGAinIP~~~~~~~~~vgtlyk~~~~~~~~a~~~g~~~~~~~~~f~~~~ 165 (289)
++|+|+.+++ .++.++||+|++++|..+|||||+|+|..++.+. +
T Consensus 1 ~~~~e~~~~~-~~~~~iiD~R~~~~~~~~hipgA~~ip~~~~~~~----------------------------------~ 45 (90)
T cd01524 1 VQWHELDNYR-ADGVTLIDVRTPQEFEKGHIKGAINIPLDELRDR----------------------------------L 45 (90)
T ss_pred CCHHHHHHHh-cCCCEEEECCCHHHHhcCCCCCCEeCCHHHHHHH----------------------------------H
Confidence 4788998887 5577999999999999999999999997543221 1
Q ss_pred HhcCCCCCcEEEEcCCCCchHHHHHHHHHccCCCeeEccccHHHHH
Q 022972 166 EEKLPKDTDLIVACQKGLRSLAACELLYNAGYRNLFWVQGGLEAAE 211 (289)
Q Consensus 166 ~~~l~k~~~IVvyC~~G~RS~~aa~~L~~~G~~nV~~L~GG~~aw~ 211 (289)
..+++++++|+||++|.+|..++..|+..|| ++++|+||+.+|+
T Consensus 46 -~~~~~~~~vvl~c~~g~~a~~~a~~L~~~G~-~v~~l~GG~~~w~ 89 (90)
T cd01524 46 -NELPKDKEIIVYCAVGLRGYIAARILTQNGF-KVKNLDGGYKTYS 89 (90)
T ss_pred -HhcCCCCcEEEEcCCChhHHHHHHHHHHCCC-CEEEecCCHHHhc
Confidence 2467788999999999999999999999999 8999999999996
No 24
>cd01449 TST_Repeat_2 Thiosulfate sulfurtransferase (TST), C-terminal, catalytic domain. TST contains 2 copies of the Rhodanese Homology Domain; this is the second repeat. Only the second repeat contains the catalytically active Cys residue.
Probab=99.81 E-value=5.2e-20 Score=147.90 Aligned_cols=104 Identities=20% Similarity=0.221 Sum_probs=84.1
Q ss_pred eCHHHHHHhhcCCCcEEEEeCChhhhhh-----------ccCCCcEeeCCCCCcccccCCCCCccccccccCCccCCCCC
Q 022972 86 LTPREAGYAVQLSSKTLLDVRPSTERKK-----------AWIKGSIWIPIFDIDDTFDAGSLPQKVTNFVMGGWWSGVPT 154 (289)
Q Consensus 86 Is~~el~~~l~~~~~vlIDVRs~~Ey~~-----------ghIPGAinIP~~~~~~~~~vgtlyk~~~~~~~~a~~~g~~~ 154 (289)
++++++.+++++++.+|||||++.||.. ||||||+|+|+.++.... .
T Consensus 1 ~s~~~l~~~l~~~~~~iiDvR~~~e~~~~~~~~~~~~~~ghIpgA~~~p~~~~~~~~----------------------~ 58 (118)
T cd01449 1 VTAEEVLANLDSGDVQLVDARSPERFRGEVPEPRPGLRSGHIPGAVNIPWTSLLDED----------------------G 58 (118)
T ss_pred CCHHHHHHhcCCCCcEEEeCCCHHHcCCcCCCCCCCCcCCcCCCCcccChHHhcCCC----------------------C
Confidence 4788999888766789999999999987 999999999987643211 1
Q ss_pred CcccHHHHHHHHhc--CCCCCcEEEEcCCCCchHHHHHHHHHccCCCeeEccccHHHHH
Q 022972 155 LSYNKQFLSKVEEK--LPKDTDLIVACQKGLRSLAACELLYNAGYRNLFWVQGGLEAAE 211 (289)
Q Consensus 155 ~~~~~~f~~~~~~~--l~k~~~IVvyC~~G~RS~~aa~~L~~~G~~nV~~L~GG~~aw~ 211 (289)
..+.++.+++.... ++++++||+||++|.||..+++.|+.+||+|++.|+||+.+|.
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~iv~yc~~g~~s~~~~~~l~~~G~~~v~~l~GG~~~W~ 117 (118)
T cd01449 59 TFKSPEELRALFAALGITPDKPVIVYCGSGVTACVLLLALELLGYKNVRLYDGSWSEWG 117 (118)
T ss_pred CcCCHHHHHHHHHHcCCCCCCCEEEECCcHHHHHHHHHHHHHcCCCCeeeeCChHHHhc
Confidence 12334444444433 5688899999999999999999999999999999999999996
No 25
>cd01530 Cdc25 Cdc25 phosphatases are members of the Rhodanese Homology Domain superfamily. They activate the cell division kinases throughout the cell cycle progression. Cdc25 phosphatases dephosphorylate phosphotyrosine and phosphothreonine residues, in order to activate their Cdk/cyclin substrates. Cdc25A phosphatase functions to regulate S phase entry and Cdc25B is required for G2/M phase transition of the cell cycle. The Cdc25 domain binds oxyanions at the catalytic site and has the signature motif (H/YCxxxxxR).
Probab=99.81 E-value=1.2e-19 Score=148.14 Aligned_cols=98 Identities=22% Similarity=0.324 Sum_probs=79.2
Q ss_pred ceeCHHHHHHhhcC------CCcEEEEeCChhhhhhccCCCcEeeCCC-CCcccccCCCCCccccccccCCccCCCCCCc
Q 022972 84 KVLTPREAGYAVQL------SSKTLLDVRPSTERKKAWIKGSIWIPIF-DIDDTFDAGSLPQKVTNFVMGGWWSGVPTLS 156 (289)
Q Consensus 84 ~~Is~~el~~~l~~------~~~vlIDVRs~~Ey~~ghIPGAinIP~~-~~~~~~~vgtlyk~~~~~~~~a~~~g~~~~~ 156 (289)
+.||++|+.++++. ++.++||||++.||+.||||||+|+|.. .+.+..
T Consensus 2 ~~Is~~el~~~l~~~~~~~~~~~~liDvR~~~e~~~ghI~gA~~ip~~~~l~~~~------------------------- 56 (121)
T cd01530 2 KRISPETLARLLQGKYDNFFDKYIIIDCRFPYEYNGGHIKGAVNLSTKDELEEFF------------------------- 56 (121)
T ss_pred CccCHHHHHHHHhcccccCCCCEEEEECCCHHHHhCCcCCCCEeCCcHHHHHHHH-------------------------
Confidence 46899999998865 3689999999999999999999999985 222210
Q ss_pred ccHHHHHHH-HhcCCCCCcEEEEcC-CCCchHHHHHHHHHc------------cCCCeeEccccHHHHH
Q 022972 157 YNKQFLSKV-EEKLPKDTDLIVACQ-KGLRSLAACELLYNA------------GYRNLFWVQGGLEAAE 211 (289)
Q Consensus 157 ~~~~f~~~~-~~~l~k~~~IVvyC~-~G~RS~~aa~~L~~~------------G~~nV~~L~GG~~aw~ 211 (289)
.+.. ...++++++||+||+ +|.||..+++.|+.. ||++|++|+|||.+|-
T Consensus 57 -----~~~~~~~~~~~~~~vv~yC~~sg~rs~~aa~~L~~~~~~~~~~~~~~~g~~~v~~L~GG~~~f~ 120 (121)
T cd01530 57 -----LDKPGVASKKKRRVLIFHCEFSSKRGPRMARHLRNLDRELNSNRYPLLYYPEIYILEGGYKNFF 120 (121)
T ss_pred -----HHhhcccccCCCCEEEEECCCccccHHHHHHHHHHHhhhhccccCCCCCCCeEEEEcChhHhhc
Confidence 0000 012678899999996 999999999999985 9999999999999984
No 26
>smart00450 RHOD Rhodanese Homology Domain. An alpha beta fold found duplicated in the Rhodanese protein. The the Cysteine containing enzymatically active version of the domain is also found in the CDC25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and stress proteins such as Senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions with a loss of the cysteine are also seen in Dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases. These are likely to play a role in protein interactions.
Probab=99.80 E-value=9e-20 Score=139.49 Aligned_cols=98 Identities=28% Similarity=0.388 Sum_probs=77.4
Q ss_pred CCCcEEEEeCChhhhhhccCCCcEeeCCCCCcccccCCCCCccccccccCCccCCCCCCcccHHHHHHHHh-cCCCCCcE
Q 022972 97 LSSKTLLDVRPSTERKKAWIKGSIWIPIFDIDDTFDAGSLPQKVTNFVMGGWWSGVPTLSYNKQFLSKVEE-KLPKDTDL 175 (289)
Q Consensus 97 ~~~~vlIDVRs~~Ey~~ghIPGAinIP~~~~~~~~~vgtlyk~~~~~~~~a~~~g~~~~~~~~~f~~~~~~-~l~k~~~I 175 (289)
.++.+|||+|++.||+.+|||||+|+|...+..... ......+...... ..+++++|
T Consensus 2 ~~~~~ivDvR~~~e~~~~hi~ga~~i~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~~~i 59 (100)
T smart00450 2 DEKVVLLDVRSPEEYEGGHIPGAVNIPLSELLDRRG----------------------ELDILEFEELLKRLGLDKDKPV 59 (100)
T ss_pred CCCEEEEECCCHHHhccCCCCCceeCCHHHhccCCC----------------------CcCHHHHHHHHHHcCCCCCCeE
Confidence 357899999999999999999999999977554321 0011122222222 36788899
Q ss_pred EEEcCCCCchHHHHHHHHHccCCCeeEccccHHHHHhCCCC
Q 022972 176 IVACQKGLRSLAACELLYNAGYRNLFWVQGGLEAAEEEDLV 216 (289)
Q Consensus 176 VvyC~~G~RS~~aa~~L~~~G~~nV~~L~GG~~aw~~~gl~ 216 (289)
|+||++|.++..+++.|+.+||++|++|+||+.+|++.+.|
T Consensus 60 v~~c~~g~~a~~~~~~l~~~G~~~v~~l~GG~~~w~~~~~~ 100 (100)
T smart00450 60 VVYCRSGNRSAKAAWLLRELGFKNVYLLDGGYKEWSAAGPP 100 (100)
T ss_pred EEEeCCCcHHHHHHHHHHHcCCCceEEecCCHHHHHhcCCC
Confidence 99999999999999999999999999999999999988754
No 27
>cd01529 4RHOD_Repeats Member of the Rhodanese Homology Domain superfamily. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. Only the second and most of the fourth repeats contain the putative catalytic Cys residue. This CD aligns the 1st , 2nd, 3rd, and 4th repeats.
Probab=99.80 E-value=1.2e-19 Score=141.23 Aligned_cols=87 Identities=24% Similarity=0.242 Sum_probs=71.5
Q ss_pred CCCcEEEEeCChhhhhhccCCCcEeeCCCCCcccccCCCCCccccccccCCccCCCCCCcccHHHHHHHHhcCCCCCcEE
Q 022972 97 LSSKTLLDVRPSTERKKAWIKGSIWIPIFDIDDTFDAGSLPQKVTNFVMGGWWSGVPTLSYNKQFLSKVEEKLPKDTDLI 176 (289)
Q Consensus 97 ~~~~vlIDVRs~~Ey~~ghIPGAinIP~~~~~~~~~vgtlyk~~~~~~~~a~~~g~~~~~~~~~f~~~~~~~l~k~~~IV 176 (289)
+++.++||||++.||+++|||||+|+|..++... .+.++. ....+++++||
T Consensus 10 ~~~~~iiDvR~~~~~~~~hIpgA~~ip~~~~~~~----------------------------~~~~~~-~~~~~~~~~iv 60 (96)
T cd01529 10 EPGTALLDVRAEDEYAAGHLPGKRSIPGAALVLR----------------------------SQELQA-LEAPGRATRYV 60 (96)
T ss_pred CCCeEEEeCCCHHHHcCCCCCCcEeCCHHHhcCC----------------------------HHHHHH-hhcCCCCCCEE
Confidence 4578999999999999999999999997543221 122222 22457888999
Q ss_pred EEcCCCCchHHHHHHHHHccCCCeeEccccHHHHHh
Q 022972 177 VACQKGLRSLAACELLYNAGYRNLFWVQGGLEAAEE 212 (289)
Q Consensus 177 vyC~~G~RS~~aa~~L~~~G~~nV~~L~GG~~aw~~ 212 (289)
+||++|.+|..+++.|+..||+||+.|+||+.+|.+
T Consensus 61 v~c~~g~~s~~~~~~l~~~G~~~v~~l~GG~~~W~~ 96 (96)
T cd01529 61 LTCDGSLLARFAAQELLALGGKPVALLDGGTSAWVA 96 (96)
T ss_pred EEeCChHHHHHHHHHHHHcCCCCEEEeCCCHHHhcC
Confidence 999999999999999999999999999999999963
No 28
>PRK01415 hypothetical protein; Validated
Probab=99.78 E-value=3.7e-19 Score=161.82 Aligned_cols=104 Identities=18% Similarity=0.317 Sum_probs=88.3
Q ss_pred CcceeCHHHHHHhhcCCCcEEEEeCChhhhhhccCCCcEeeCCCCCcccccCCCCCccccccccCCccCCCCCCcccHHH
Q 022972 82 KVKVLTPREAGYAVQLSSKTLLDVRPSTERKKAWIKGSIWIPIFDIDDTFDAGSLPQKVTNFVMGGWWSGVPTLSYNKQF 161 (289)
Q Consensus 82 ~~~~Is~~el~~~l~~~~~vlIDVRs~~Ey~~ghIPGAinIP~~~~~~~~~vgtlyk~~~~~~~~a~~~g~~~~~~~~~f 161 (289)
.-+.|+|+++.+++++++.++||||++.||+.||||||+|+|+.++.+- +++
T Consensus 110 ~g~~i~p~e~~~ll~~~~~vvIDVRn~~E~~~Ghi~gAinip~~~f~e~----------------------------~~~ 161 (247)
T PRK01415 110 KGEYIEPKDWDEFITKQDVIVIDTRNDYEVEVGTFKSAINPNTKTFKQF----------------------------PAW 161 (247)
T ss_pred CccccCHHHHHHHHhCCCcEEEECCCHHHHhcCCcCCCCCCChHHHhhh----------------------------HHH
Confidence 4568999999999988899999999999999999999999998765321 111
Q ss_pred HHHHHhcCCCCCcEEEEcCCCCchHHHHHHHHHccCCCeeEccccHHHHHhCC
Q 022972 162 LSKVEEKLPKDTDLIVACQKGLRSLAACELLYNAGYRNLFWVQGGLEAAEEED 214 (289)
Q Consensus 162 ~~~~~~~l~k~~~IVvyC~~G~RS~~aa~~L~~~G~~nV~~L~GG~~aw~~~g 214 (289)
..+. ..++++++|++||.+|.||..++..|++.||+||+.|+||+.+|.++.
T Consensus 162 ~~~~-~~~~k~k~Iv~yCtgGiRs~kAa~~L~~~Gf~~Vy~L~GGi~~w~~~~ 213 (247)
T PRK01415 162 VQQN-QELLKGKKIAMVCTGGIRCEKSTSLLKSIGYDEVYHLKGGILQYLEDT 213 (247)
T ss_pred Hhhh-hhhcCCCeEEEECCCChHHHHHHHHHHHcCCCcEEEechHHHHHHHhc
Confidence 2111 245788999999999999999999999999999999999999998753
No 29
>cd01531 Acr2p Eukaryotic arsenate resistance proteins are members of the Rhodanese Homology Domain superfamily. Included in this CD is the Saccharomyces cerevisiae arsenate reductase protein, Acr2p, and other yeast and plant homologs.
Probab=99.77 E-value=9.7e-19 Score=140.32 Aligned_cols=101 Identities=19% Similarity=0.306 Sum_probs=78.8
Q ss_pred cceeCHHHHHHhhcC--CCcEEEEeCChhhhhhccCCCcEeeCCCCCcccccCCCCCccccccccCCccCCCCCCcccHH
Q 022972 83 VKVLTPREAGYAVQL--SSKTLLDVRPSTERKKAWIKGSIWIPIFDIDDTFDAGSLPQKVTNFVMGGWWSGVPTLSYNKQ 160 (289)
Q Consensus 83 ~~~Is~~el~~~l~~--~~~vlIDVRs~~Ey~~ghIPGAinIP~~~~~~~~~vgtlyk~~~~~~~~a~~~g~~~~~~~~~ 160 (289)
++.|+++|+.+++.. ++.++||||++ ||..+|||||+|+|+.++.... ++
T Consensus 1 ~~~is~~~l~~~~~~~~~~~~iiDvR~~-e~~~~hi~gA~~ip~~~l~~~~---------------------------~~ 52 (113)
T cd01531 1 VSYISPAQLKGWIRNGRPPFQVVDVRDE-DYAGGHIKGSWHYPSTRFKAQL---------------------------NQ 52 (113)
T ss_pred CCcCCHHHHHHHHHcCCCCEEEEEcCCc-ccCCCcCCCCEecCHHHHhhCH---------------------------HH
Confidence 357999999998865 45789999999 9999999999999987653221 11
Q ss_pred HHHHHHhcCCCCCcEEEEcC-CCCchHHHHHHHHH--------ccCCCeeEccccHHHHHhC
Q 022972 161 FLSKVEEKLPKDTDLIVACQ-KGLRSLAACELLYN--------AGYRNLFWVQGGLEAAEEE 213 (289)
Q Consensus 161 f~~~~~~~l~k~~~IVvyC~-~G~RS~~aa~~L~~--------~G~~nV~~L~GG~~aw~~~ 213 (289)
+.+.. ..+++++||+||. +|.||..++..|.+ .||+||+.|+||+.+|++.
T Consensus 53 ~~~~~--~~~~~~~iv~yC~~~~~r~~~aa~~l~~~~~~~~~~~G~~~v~~l~gG~~~w~~~ 112 (113)
T cd01531 53 LVQLL--SGSKKDTVVFHCALSQVRGPSAARKFLRYLDEEDLETSKFEVYVLHGGFNAWESS 112 (113)
T ss_pred HHHHH--hcCCCCeEEEEeecCCcchHHHHHHHHHHHHHhccccCCCeEEEEcChHHHHHhh
Confidence 11111 1367789999997 77899998887754 4999999999999999863
No 30
>cd01532 4RHOD_Repeat_1 Member of the Rhodanese Homology Domain superfamily, repeat 1. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 1st repeat which does not contain the putative catalytic Cys residue.
Probab=99.77 E-value=5.9e-19 Score=136.80 Aligned_cols=84 Identities=19% Similarity=0.264 Sum_probs=69.0
Q ss_pred hcCCCcEEEEeCChhhhhhccCCCcEeeCCCCCcccccCCCCCccccccccCCccCCCCCCcccHHHHHHHHhcC-CCCC
Q 022972 95 VQLSSKTLLDVRPSTERKKAWIKGSIWIPIFDIDDTFDAGSLPQKVTNFVMGGWWSGVPTLSYNKQFLSKVEEKL-PKDT 173 (289)
Q Consensus 95 l~~~~~vlIDVRs~~Ey~~ghIPGAinIP~~~~~~~~~vgtlyk~~~~~~~~a~~~g~~~~~~~~~f~~~~~~~l-~k~~ 173 (289)
+++++.++||||++.||..+|||||+|+|...+.... . ..+ ++++
T Consensus 6 ~~~~~~~liDvR~~~e~~~~hi~ga~~ip~~~~~~~~---------------------------------~-~~~~~~~~ 51 (92)
T cd01532 6 LAREEIALIDVREEDPFAQSHPLWAANLPLSRLELDA---------------------------------W-VRIPRRDT 51 (92)
T ss_pred hcCCCeEEEECCCHHHHhhCCcccCeeCCHHHHHhhh---------------------------------H-hhCCCCCC
Confidence 4566789999999999999999999999976432110 0 123 3578
Q ss_pred cEEEEcCCCCc--hHHHHHHHHHccCCCeeEccccHHHHHh
Q 022972 174 DLIVACQKGLR--SLAACELLYNAGYRNLFWVQGGLEAAEE 212 (289)
Q Consensus 174 ~IVvyC~~G~R--S~~aa~~L~~~G~~nV~~L~GG~~aw~~ 212 (289)
+|||||++|.| |..+++.|+..||++|+.|+||+.+|++
T Consensus 52 ~ivl~c~~G~~~~s~~aa~~L~~~G~~~v~~l~GG~~~W~~ 92 (92)
T cd01532 52 PIVVYGEGGGEDLAPRAARRLSELGYTDVALLEGGLQGWRA 92 (92)
T ss_pred eEEEEeCCCCchHHHHHHHHHHHcCccCEEEccCCHHHHcC
Confidence 99999999887 6889999999999999999999999963
No 31
>COG0607 PspE Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]
Probab=99.77 E-value=2.4e-18 Score=135.69 Aligned_cols=97 Identities=32% Similarity=0.499 Sum_probs=81.6
Q ss_pred HHHHHhhcCCCcEEEEeCChhhhhhccCCC-cEeeCCCCCcccccCCCCCccccccccCCccCCCCCCcccHHHHHHHHh
Q 022972 89 REAGYAVQLSSKTLLDVRPSTERKKAWIKG-SIWIPIFDIDDTFDAGSLPQKVTNFVMGGWWSGVPTLSYNKQFLSKVEE 167 (289)
Q Consensus 89 ~el~~~l~~~~~vlIDVRs~~Ey~~ghIPG-AinIP~~~~~~~~~vgtlyk~~~~~~~~a~~~g~~~~~~~~~f~~~~~~ 167 (289)
.+.......++.++||||++.||+.+|||| ++|+|+.++.+.... .
T Consensus 10 ~~~~~~~~~~~~~liDvR~~~e~~~~~i~~~~~~ip~~~~~~~~~~---------------------------------~ 56 (110)
T COG0607 10 DEAALLLAGEDAVLLDVREPEEYERGHIPGAAINIPLSELKAAENL---------------------------------L 56 (110)
T ss_pred HHHHHhhccCCCEEEeccChhHhhhcCCCcceeeeecccchhhhcc---------------------------------c
Confidence 333333345689999999999999999999 999999987654310 0
Q ss_pred cCCCCCcEEEEcCCCCchHHHHHHHHHccCCCeeEccccHHHHHhCCCCcc
Q 022972 168 KLPKDTDLIVACQKGLRSLAACELLYNAGYRNLFWVQGGLEAAEEEDLVRE 218 (289)
Q Consensus 168 ~l~k~~~IVvyC~~G~RS~~aa~~L~~~G~~nV~~L~GG~~aw~~~gl~~~ 218 (289)
.+++++++||||++|.||..++..|+.+||++++.+.||+.+|...+++.+
T Consensus 57 ~~~~~~~ivv~C~~G~rS~~aa~~L~~~G~~~~~~l~gG~~~w~~~~~~~~ 107 (110)
T COG0607 57 ELPDDDPIVVYCASGVRSAAAAAALKLAGFTNVYNLDGGIDAWKGAGLPLV 107 (110)
T ss_pred ccCCCCeEEEEeCCCCChHHHHHHHHHcCCccccccCCcHHHHHhcCCCcc
Confidence 047889999999999999999999999999988899999999999998875
No 32
>cd01535 4RHOD_Repeat_4 Member of the Rhodanese Homology Domain superfamily, repeat 4. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 4th repeat which, in general, contains the putative catalytic Cys residue.
Probab=99.77 E-value=8.2e-19 Score=147.76 Aligned_cols=87 Identities=24% Similarity=0.342 Sum_probs=75.8
Q ss_pred CCcEEEEeCChhhhhhccCCCcEeeCCCCCcccccCCCCCccccccccCCccCCCCCCcccHHHHHHHHhcCCCCCcEEE
Q 022972 98 SSKTLLDVRPSTERKKAWIKGSIWIPIFDIDDTFDAGSLPQKVTNFVMGGWWSGVPTLSYNKQFLSKVEEKLPKDTDLIV 177 (289)
Q Consensus 98 ~~~vlIDVRs~~Ey~~ghIPGAinIP~~~~~~~~~vgtlyk~~~~~~~~a~~~g~~~~~~~~~f~~~~~~~l~k~~~IVv 177 (289)
.+.+|||||++.+|..+|||||+|+|...+.+ . ...++++++|||
T Consensus 10 ~~~~ivDvR~~~e~~~gHIpgAi~~~~~~l~~----------------------------------~-l~~l~~~~~vVv 54 (145)
T cd01535 10 GQTAVVDVTASANYVKRHIPGAWWVLRAQLAQ----------------------------------A-LEKLPAAERYVL 54 (145)
T ss_pred CCeEEEECCCHHHHHcCCCCCceeCCHHHHHH----------------------------------H-HHhcCCCCCEEE
Confidence 35899999999999999999999998643321 2 234677889999
Q ss_pred EcCCCCchHHHHHHHHHccCCCeeEccccHHHHHhCCCCccC
Q 022972 178 ACQKGLRSLAACELLYNAGYRNLFWVQGGLEAAEEEDLVREG 219 (289)
Q Consensus 178 yC~~G~RS~~aa~~L~~~G~~nV~~L~GG~~aw~~~gl~~~~ 219 (289)
||.+|.+|..+++.|+..||++|++|+||+.+|+..|+|++.
T Consensus 55 ~c~~g~~a~~aa~~L~~~G~~~v~~L~GG~~aW~~~g~pl~~ 96 (145)
T cd01535 55 TCGSSLLARFAAADLAALTVKPVFVLEGGTAAWIAAGLPVES 96 (145)
T ss_pred EeCCChHHHHHHHHHHHcCCcCeEEecCcHHHHHHCCCCccc
Confidence 999999999999999999999999999999999999999874
No 33
>PRK11493 sseA 3-mercaptopyruvate sulfurtransferase; Provisional
Probab=99.76 E-value=4.3e-18 Score=157.53 Aligned_cols=118 Identities=19% Similarity=0.249 Sum_probs=93.4
Q ss_pred ceeCHHHHHHhhcCCCcEEEEeCC----------hhhhhhccCCCcEeeCCCCCcccccCCCCCccccccccCCccCCCC
Q 022972 84 KVLTPREAGYAVQLSSKTLLDVRP----------STERKKAWIKGSIWIPIFDIDDTFDAGSLPQKVTNFVMGGWWSGVP 153 (289)
Q Consensus 84 ~~Is~~el~~~l~~~~~vlIDVRs----------~~Ey~~ghIPGAinIP~~~~~~~~~vgtlyk~~~~~~~~a~~~g~~ 153 (289)
..++++++.+++++++.+|||+|+ +.+|..||||||+|+|+..+.... ...+
T Consensus 5 ~lvs~~~l~~~l~~~~~~iiD~R~~~~~~~~~~~~~~y~~GHIpGA~~~~~~~~~~~~------------------~~~~ 66 (281)
T PRK11493 5 WFVAADWLAEHIDDPEIQIIDARMAPPGQEDRDVAAEYRAGHIPGAVFFDIEALSDHT------------------SPLP 66 (281)
T ss_pred cccCHHHHHHhcCCCCeEEEEeeCCCCCccccchHHHHHhCcCCCCEEcCHHHhcCCC------------------CCCC
Confidence 468999999999888899999997 789999999999999976543211 1122
Q ss_pred CCcccHHHHHHHHhc--CCCCCcEEEEcCCCCc-hHHHHHHHHHccCCCeeEccccHHHHHhCCCCccC
Q 022972 154 TLSYNKQFLSKVEEK--LPKDTDLIVACQKGLR-SLAACELLYNAGYRNLFWVQGGLEAAEEEDLVREG 219 (289)
Q Consensus 154 ~~~~~~~f~~~~~~~--l~k~~~IVvyC~~G~R-S~~aa~~L~~~G~~nV~~L~GG~~aw~~~gl~~~~ 219 (289)
.+.+.++.++++.+. ++++++||+||.++.+ +..+++.|+.+||+||++|+||+.+|.++|+|++.
T Consensus 67 ~~~~~~~~~~~~~~~~Gi~~d~~VVvyc~~~~~~a~~~~~~l~~~G~~~v~~l~GG~~~W~~~g~p~~~ 135 (281)
T PRK11493 67 HMMPRPETFAVAMRELGVNQDKHLVVYDEGNLFSAPRAWWMLRTFGVEKVSILAGGLAGWQRDDLLLEE 135 (281)
T ss_pred CCCCCHHHHHHHHHHcCCCCCCEEEEECCCCCchHHHHHHHHHHhcCCcEEEcCCCHHHHHHcCCCccC
Confidence 333344444444444 6789999999987764 66788999999999999999999999999999875
No 34
>cd01445 TST_Repeats Thiosulfate sulfurtransferases (TST) contain 2 copies of the Rhodanese Homology Domain. Only the second repeat contains the catalytically active Cys residue. The role of the 1st repeat is uncertain, but believed to be involved in protein interaction. This CD aligns the 1st and 2nd repeats.
Probab=99.76 E-value=3.4e-18 Score=142.79 Aligned_cols=108 Identities=15% Similarity=0.111 Sum_probs=83.5
Q ss_pred eCHHHHHHhhc----CCCcEEEEeCCh--------hhhhh------------ccCCCcEeeCCCCCcccccCCCCCcccc
Q 022972 86 LTPREAGYAVQ----LSSKTLLDVRPS--------TERKK------------AWIKGSIWIPIFDIDDTFDAGSLPQKVT 141 (289)
Q Consensus 86 Is~~el~~~l~----~~~~vlIDVRs~--------~Ey~~------------ghIPGAinIP~~~~~~~~~vgtlyk~~~ 141 (289)
+|++++.+.++ .++.+|||+|++ .+|.. ||||||+|+|+.++....
T Consensus 1 vs~e~l~~~l~~~~~~~~~~iiD~r~~~~~~~~~~~~y~~~~~~~~~~~~~~GHIPgAv~~~~~~~~~~~---------- 70 (138)
T cd01445 1 KSTEQLAENLEAGKVGKGFQLLDARAQSPGTREARGEYLETQPEPDAVGLDSGHIPGASFFDFEECLDEA---------- 70 (138)
T ss_pred CCHHHHHHHhhccccCCCeEEEEccCCCccCcchhhhhcccCCCCCcCCCcCCcCCCCEeeCHHHhhCcC----------
Confidence 57889998887 467999999987 89998 999999999976532211
Q ss_pred ccccCCccCCCCCCcccHHHHHHHHhc--CCCCCcEEEEcCC---CCchHHHHHHHHHccCCCeeEccccHHHHH
Q 022972 142 NFVMGGWWSGVPTLSYNKQFLSKVEEK--LPKDTDLIVACQK---GLRSLAACELLYNAGYRNLFWVQGGLEAAE 211 (289)
Q Consensus 142 ~~~~~a~~~g~~~~~~~~~f~~~~~~~--l~k~~~IVvyC~~---G~RS~~aa~~L~~~G~~nV~~L~GG~~aw~ 211 (289)
.....+.+.++.+++.... ++++++||+||.+ |.++..+++.|+.+|++||++|+||+.+|+
T Consensus 71 --------~~~~~~~p~~~~~~~~~~~~GI~~~~~vVvY~~~~~~g~~A~r~~~~l~~~G~~~v~ildGG~~~W~ 137 (138)
T cd01445 71 --------GFEESMEPSEAEFAAMFEAKGIDLDKHLIATDGDDLGGFTACHIALAARLCGHPDVAILDGGFFEWF 137 (138)
T ss_pred --------CCCCCCCCCHHHHHHHHHHcCCCCCCeEEEECCCCCcchHHHHHHHHHHHcCCCCeEEeCCCHHHhh
Confidence 0112333444444444433 7788999999975 778999999999999999999999999996
No 35
>cd00158 RHOD Rhodanese Homology Domain (RHOD); an alpha beta fold domain found duplicated in the rhodanese protein. The cysteine containing enzymatically active version of the domain is also found in the Cdc25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and certain stress proteins such as senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions (no active site cysteine) are also seen in dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases, where they are believed to play a regulatory role in multidomain proteins.
Probab=99.76 E-value=9.5e-19 Score=132.12 Aligned_cols=87 Identities=32% Similarity=0.467 Sum_probs=73.6
Q ss_pred HHhhcCCCcEEEEeCChhhhhhccCCCcEeeCCCCCcccccCCCCCccccccccCCccCCCCCCcccHHHHHHHHhcCCC
Q 022972 92 GYAVQLSSKTLLDVRPSTERKKAWIKGSIWIPIFDIDDTFDAGSLPQKVTNFVMGGWWSGVPTLSYNKQFLSKVEEKLPK 171 (289)
Q Consensus 92 ~~~l~~~~~vlIDVRs~~Ey~~ghIPGAinIP~~~~~~~~~vgtlyk~~~~~~~~a~~~g~~~~~~~~~f~~~~~~~l~k 171 (289)
..+++.++..+||+|++.||+.+|||||+|+|..++.... .....++
T Consensus 3 ~~~~~~~~~~iiD~R~~~~~~~~~i~ga~~~~~~~~~~~~---------------------------------~~~~~~~ 49 (89)
T cd00158 3 KELLDDEDAVLLDVREPEEYAAGHIPGAINIPLSELEERA---------------------------------ALLELDK 49 (89)
T ss_pred HHHhcCCCeEEEECCCHHHHhccccCCCEecchHHHhhHH---------------------------------HhhccCC
Confidence 3444566889999999999999999999999987644320 1124678
Q ss_pred CCcEEEEcCCCCchHHHHHHHHHccCCCeeEccccHHHHH
Q 022972 172 DTDLIVACQKGLRSLAACELLYNAGYRNLFWVQGGLEAAE 211 (289)
Q Consensus 172 ~~~IVvyC~~G~RS~~aa~~L~~~G~~nV~~L~GG~~aw~ 211 (289)
+++||+||.+|.+|..+++.|+.+||+++++|+||+++|+
T Consensus 50 ~~~vv~~c~~~~~a~~~~~~l~~~G~~~v~~l~gG~~~w~ 89 (89)
T cd00158 50 DKPIVVYCRSGNRSARAAKLLRKAGGTNVYNLEGGMLAWK 89 (89)
T ss_pred CCeEEEEeCCCchHHHHHHHHHHhCcccEEEecCChhhcC
Confidence 8999999999999999999999999999999999999995
No 36
>PLN02723 3-mercaptopyruvate sulfurtransferase
Probab=99.76 E-value=5.7e-18 Score=159.73 Aligned_cols=121 Identities=15% Similarity=0.193 Sum_probs=94.4
Q ss_pred CcceeCHHHHHHhhcCCCcEEEEeC--------C-hhhhhhccCCCcEeeCCCCCcccccCCCCCccccccccCCccCCC
Q 022972 82 KVKVLTPREAGYAVQLSSKTLLDVR--------P-STERKKAWIKGSIWIPIFDIDDTFDAGSLPQKVTNFVMGGWWSGV 152 (289)
Q Consensus 82 ~~~~Is~~el~~~l~~~~~vlIDVR--------s-~~Ey~~ghIPGAinIP~~~~~~~~~vgtlyk~~~~~~~~a~~~g~ 152 (289)
....|+++++.+++++++.+||||| + +.+|.+||||||+|+|+.++.++. ...
T Consensus 20 ~~~lvs~~~L~~~l~~~~~~IiDvr~~~~~~~r~~~~~y~~gHIPgAi~i~~~~~~~~~------------------~~~ 81 (320)
T PLN02723 20 NEPVVSVDWLHANLREPDVKVLDASWYMPDEQRNPIQEYQVAHIPGALFFDLDGISDRT------------------TDL 81 (320)
T ss_pred CCceecHHHHHHHhcCCCeEEEEeeccccCCCCchHHHHHhccCCCCeecCHHHhcCCC------------------CCc
Confidence 3468999999999987789999996 3 478999999999999986554321 122
Q ss_pred CCCcccHHHHHHHHhc--CCCCCcEEEEcCCCCc-hHHHHHHHHHccCCCeeEccccHHHHHhCCCCccCC
Q 022972 153 PTLSYNKQFLSKVEEK--LPKDTDLIVACQKGLR-SLAACELLYNAGYRNLFWVQGGLEAAEEEDLVREGP 220 (289)
Q Consensus 153 ~~~~~~~~f~~~~~~~--l~k~~~IVvyC~~G~R-S~~aa~~L~~~G~~nV~~L~GG~~aw~~~gl~~~~~ 220 (289)
+.+.+.++.+++.... ++++++|||||++|.+ +.++++.|+.+||+||++|+||+.+|.++|+|+++.
T Consensus 82 ~~~lp~~~~~~~~l~~~Gi~~~~~VVvY~~~g~~~a~r~~~~L~~~G~~~V~~LdGG~~~W~~~G~pv~~~ 152 (320)
T PLN02723 82 PHMLPSEEAFAAAVSALGIENKDGVVVYDGKGIFSAARVWWMFRVFGHEKVWVLDGGLPKWRASGYDVESS 152 (320)
T ss_pred CCCCCCHHHHHHHHHHcCCCCCCEEEEEcCCCcchHHHHHHHHHHcCCCceEEcCCCHHHHHHcCCCcccC
Confidence 3334444444444444 5688899999987764 678889999999999999999999999999998753
No 37
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=99.75 E-value=2.1e-18 Score=165.85 Aligned_cols=103 Identities=28% Similarity=0.454 Sum_probs=88.2
Q ss_pred cceeCHHHHHHhhcCCCcEEEEeCChhhhhhccCCCcEeeCCCCCcccccCCCCCccccccccCCccCCCCCCcccHHHH
Q 022972 83 VKVLTPREAGYAVQLSSKTLLDVRPSTERKKAWIKGSIWIPIFDIDDTFDAGSLPQKVTNFVMGGWWSGVPTLSYNKQFL 162 (289)
Q Consensus 83 ~~~Is~~el~~~l~~~~~vlIDVRs~~Ey~~ghIPGAinIP~~~~~~~~~vgtlyk~~~~~~~~a~~~g~~~~~~~~~f~ 162 (289)
++.|+++|+.+++++ +.++||||++.||..+|||||+|+|+..+.+.
T Consensus 2 v~~is~~el~~~l~~-~~~ivDvR~~~e~~~ghIpgAi~ip~~~l~~~-------------------------------- 48 (376)
T PRK08762 2 IREISPAEARARAAQ-GAVLIDVREAHERASGQAEGALRIPRGFLELR-------------------------------- 48 (376)
T ss_pred CceeCHHHHHHHHhC-CCEEEECCCHHHHhCCcCCCCEECCHHHHHHH--------------------------------
Confidence 568999999998864 58999999999999999999999997543221
Q ss_pred HHHHhc-CCCCCcEEEEcCCCCchHHHHHHHHHccCCCeeEccccHHHHHhCCCCccCC
Q 022972 163 SKVEEK-LPKDTDLIVACQKGLRSLAACELLYNAGYRNLFWVQGGLEAAEEEDLVREGP 220 (289)
Q Consensus 163 ~~~~~~-l~k~~~IVvyC~~G~RS~~aa~~L~~~G~~nV~~L~GG~~aw~~~gl~~~~~ 220 (289)
+... .+++++||+||++|.||..+++.|+..||+||+.|+||+.+|++.++|++..
T Consensus 49 --~~~~~~~~~~~IvvyC~~G~rs~~aa~~L~~~G~~~v~~l~GG~~~W~~~g~p~~~~ 105 (376)
T PRK08762 49 --IETHLPDRDREIVLICASGTRSAHAAATLRELGYTRVASVAGGFSAWKDAGLPLERP 105 (376)
T ss_pred --HhhhcCCCCCeEEEEcCCCcHHHHHHHHHHHcCCCceEeecCcHHHHHhcCCccccc
Confidence 1111 3678899999999999999999999999999999999999999999998754
No 38
>PRK05320 rhodanese superfamily protein; Provisional
Probab=99.74 E-value=4.9e-18 Score=155.70 Aligned_cols=104 Identities=18% Similarity=0.260 Sum_probs=84.7
Q ss_pred CCcceeCHHHHHHhhcCC------CcEEEEeCChhhhhhccCCCcEeeCCCCCcccccCCCCCccccccccCCccCCCCC
Q 022972 81 GKVKVLTPREAGYAVQLS------SKTLLDVRPSTERKKAWIKGSIWIPIFDIDDTFDAGSLPQKVTNFVMGGWWSGVPT 154 (289)
Q Consensus 81 ~~~~~Is~~el~~~l~~~------~~vlIDVRs~~Ey~~ghIPGAinIP~~~~~~~~~vgtlyk~~~~~~~~a~~~g~~~ 154 (289)
+..+.++++|+.++++.+ +.++||||++.||+.||||||+|||+.++.+.
T Consensus 107 ~~~~~is~~el~~~l~~~~~~~~~~~vlIDVR~~~E~~~Ghi~GAiniPl~~f~~~------------------------ 162 (257)
T PRK05320 107 GRAPSVDAATLKRWLDQGHDDAGRPVVMLDTRNAFEVDVGTFDGALDYRIDKFTEF------------------------ 162 (257)
T ss_pred CcCceeCHHHHHHHHhccccccCCCeEEEECCCHHHHccCccCCCEeCChhHhhhh------------------------
Confidence 445789999999887642 47899999999999999999999998765321
Q ss_pred CcccHHHHHHHHhcCCCCCcEEEEcCCCCchHHHHHHHHHccCCCeeEccccHHHHHhC
Q 022972 155 LSYNKQFLSKVEEKLPKDTDLIVACQKGLRSLAACELLYNAGYRNLFWVQGGLEAAEEE 213 (289)
Q Consensus 155 ~~~~~~f~~~~~~~l~k~~~IVvyC~~G~RS~~aa~~L~~~G~~nV~~L~GG~~aw~~~ 213 (289)
+..+.+....+ ++++|++||++|.||..++..|++.||+||+.|+||+.+|.++
T Consensus 163 ----~~~l~~~~~~~-kdk~IvvyC~~G~Rs~~Aa~~L~~~Gf~~V~~L~GGi~~w~~~ 216 (257)
T PRK05320 163 ----PEALAAHRADL-AGKTVVSFCTGGIRCEKAAIHMQEVGIDNVYQLEGGILKYFEE 216 (257)
T ss_pred ----HHHHHhhhhhc-CCCeEEEECCCCHHHHHHHHHHHHcCCcceEEeccCHHHHHHh
Confidence 11122222223 7889999999999999999999999999999999999999874
No 39
>PRK09629 bifunctional thiosulfate sulfurtransferase/phosphatidylserine decarboxylase; Provisional
Probab=99.74 E-value=1.6e-17 Score=168.63 Aligned_cols=119 Identities=18% Similarity=0.137 Sum_probs=94.3
Q ss_pred ceeCHHHHHHhhcCCCcEEEEeCChhhhhhccCCCcEeeCCCCCcccccCCCCCccccccccCCccCCCCCCcccHHHHH
Q 022972 84 KVLTPREAGYAVQLSSKTLLDVRPSTERKKAWIKGSIWIPIFDIDDTFDAGSLPQKVTNFVMGGWWSGVPTLSYNKQFLS 163 (289)
Q Consensus 84 ~~Is~~el~~~l~~~~~vlIDVRs~~Ey~~ghIPGAinIP~~~~~~~~~vgtlyk~~~~~~~~a~~~g~~~~~~~~~f~~ 163 (289)
..|+++|+.+++++++.+|||||++.||.+||||||+|+|+....... ...+++.+.++-++
T Consensus 9 ~lIs~~eL~~~l~~~~vvIIDvR~~~eY~~GHIPGAv~i~~~~~~~~~------------------~~~~~~lp~~~~l~ 70 (610)
T PRK09629 9 LVIEPNDLLERLDAPELILVDLTSSARYEAGHIRGARFVDPKRTQLGK------------------PPAPGLLPDTADLE 70 (610)
T ss_pred ceecHHHHHHHhcCCCEEEEECCChHHHHhCCCCCcEEcChhHhhccC------------------CCCCCCCCCHHHHH
Confidence 479999999999888899999999999999999999999976432110 11223334333333
Q ss_pred HHHhc--CCCCCcEEEEcCCC-CchHHHHHHHHHccCCCeeEccccHHHHHhCCCCccCC
Q 022972 164 KVEEK--LPKDTDLIVACQKG-LRSLAACELLYNAGYRNLFWVQGGLEAAEEEDLVREGP 220 (289)
Q Consensus 164 ~~~~~--l~k~~~IVvyC~~G-~RS~~aa~~L~~~G~~nV~~L~GG~~aw~~~gl~~~~~ 220 (289)
+.... ++++++|||||++| .++.++++.|+.+||++|++|+||+.+|..+|+|+++.
T Consensus 71 ~~l~~lGI~~d~~VVvYd~~g~~~A~R~~w~L~~~G~~~V~iLdGG~~aW~~ag~p~~~~ 130 (610)
T PRK09629 71 QLFGELGHNPDAVYVVYDDEGGGWAGRFIWLLDVIGHSGYHYLDGGVLAWEAQALPLSTD 130 (610)
T ss_pred HHHHHcCCCCCCEEEEECCCCCchHHHHHHHHHHcCCCCEEEcCCCHHHHHHcCCccccC
Confidence 33333 67899999999866 57889999999999999999999999999999998753
No 40
>cd01443 Cdc25_Acr2p Cdc25 enzymes are members of the Rhodanese Homology Domain (RHOD) superfamily. Also included in this CD are eukaryotic arsenate resistance proteins such as Saccharomyces cerevisiae Acr2p and similar proteins. Cdc25 phosphatases activate the cell division kinases throughout the cell cycle progression. Cdc25 phosphatases dephosphorylate phosphotyrosine and phosphothreonine residues, in order to activate their Cdk/cyclin substrates. The Cdc25 and Acr2p RHOD domains have the signature motif (H/YCxxxxxR).
Probab=99.73 E-value=1.1e-17 Score=134.35 Aligned_cols=98 Identities=23% Similarity=0.278 Sum_probs=74.0
Q ss_pred ceeCHHHHHHhhcCC------CcEEEEeCChhhhhhccCCCcEeeCCCCCcccccCCCCCccccccccCCccCCCCCCcc
Q 022972 84 KVLTPREAGYAVQLS------SKTLLDVRPSTERKKAWIKGSIWIPIFDIDDTFDAGSLPQKVTNFVMGGWWSGVPTLSY 157 (289)
Q Consensus 84 ~~Is~~el~~~l~~~------~~vlIDVRs~~Ey~~ghIPGAinIP~~~~~~~~~vgtlyk~~~~~~~~a~~~g~~~~~~ 157 (289)
+.|+++|+.++++.+ +.+|||||++ ||..+|||||+|+|+.++.++.
T Consensus 2 ~~is~~el~~~l~~~~~~~~~~~~iiDvR~~-ef~~ghipgAi~ip~~~~~~~~-------------------------- 54 (113)
T cd01443 2 KYISPEELVALLENSDSNAGKDFVVVDLRRD-DYEGGHIKGSINLPAQSCYQTL-------------------------- 54 (113)
T ss_pred cccCHHHHHHHHhCCccccCCcEEEEECCch-hcCCCcccCceecchhHHHHHH--------------------------
Confidence 578999999998764 5789999999 9999999999999987644221
Q ss_pred cHHHHHHHHhcCCCCCcEEEEcCC-CCchHHHHHHHHH----ccC--CCeeEccccHHHHH
Q 022972 158 NKQFLSKVEEKLPKDTDLIVACQK-GLRSLAACELLYN----AGY--RNLFWVQGGLEAAE 211 (289)
Q Consensus 158 ~~~f~~~~~~~l~k~~~IVvyC~~-G~RS~~aa~~L~~----~G~--~nV~~L~GG~~aw~ 211 (289)
++..+++. .++.++||+||.+ |.||..++..|.. .|| .+++.|+||+.+|+
T Consensus 55 -~~~~~~~~--~~~~~~iv~~C~~~g~rs~~a~~~l~~~l~~~G~~~~~v~~l~GG~~~w~ 112 (113)
T cd01443 55 -PQVYALFS--LAGVKLAIFYCGSSQGRGPRAARWFADYLRKVGESLPKSYILTGGIKAWY 112 (113)
T ss_pred -HHHHHHhh--hcCCCEEEEECCCCCcccHHHHHHHHHHHhccCCCCCeEEEECChhhhhc
Confidence 11222111 1345789999985 6898888766443 475 68999999999996
No 41
>PRK00142 putative rhodanese-related sulfurtransferase; Provisional
Probab=99.73 E-value=1.1e-17 Score=157.38 Aligned_cols=104 Identities=17% Similarity=0.314 Sum_probs=87.0
Q ss_pred CCcceeCHHHHHHhhcCCCcEEEEeCChhhhhhccCCCcEeeCCCCCcccccCCCCCccccccccCCccCCCCCCcccHH
Q 022972 81 GKVKVLTPREAGYAVQLSSKTLLDVRPSTERKKAWIKGSIWIPIFDIDDTFDAGSLPQKVTNFVMGGWWSGVPTLSYNKQ 160 (289)
Q Consensus 81 ~~~~~Is~~el~~~l~~~~~vlIDVRs~~Ey~~ghIPGAinIP~~~~~~~~~vgtlyk~~~~~~~~a~~~g~~~~~~~~~ 160 (289)
.....++++++.+++++++.++||||++.||+.||||||+|+|+.++.+. ++
T Consensus 109 ~~~~~is~~el~~~l~~~~~vlIDVR~~~E~~~GhI~GAi~ip~~~~~~~----------------------------~~ 160 (314)
T PRK00142 109 NVGTYLKPKEVNELLDDPDVVFIDMRNDYEYEIGHFENAIEPDIETFREF----------------------------PP 160 (314)
T ss_pred cCCcccCHHHHHHHhcCCCeEEEECCCHHHHhcCcCCCCEeCCHHHhhhh----------------------------HH
Confidence 44568999999999888889999999999999999999999998765421 11
Q ss_pred HHHHHHhcCCCCCcEEEEcCCCCchHHHHHHHHHccCCCeeEccccHHHHHhC
Q 022972 161 FLSKVEEKLPKDTDLIVACQKGLRSLAACELLYNAGYRNLFWVQGGLEAAEEE 213 (289)
Q Consensus 161 f~~~~~~~l~k~~~IVvyC~~G~RS~~aa~~L~~~G~~nV~~L~GG~~aw~~~ 213 (289)
.+.+.. ..+++++||+||.+|.||..++.+|...||+||+.|+||+.+|.+.
T Consensus 161 ~l~~~~-~~~kdk~IvvyC~~G~Rs~~aa~~L~~~Gf~~V~~L~GGi~~w~~~ 212 (314)
T PRK00142 161 WVEENL-DPLKDKKVVMYCTGGIRCEKASAWMKHEGFKEVYQLEGGIITYGED 212 (314)
T ss_pred HHHHhc-CCCCcCeEEEECCCCcHHHHHHHHHHHcCCCcEEEecchHHHHHHh
Confidence 111111 2457889999999999999999999999999999999999999874
No 42
>TIGR02981 phageshock_pspE phage shock operon rhodanese PspE. Members of this very narrowly defined protein family are proteins active as rhodanese (EC 2.8.1.1) and found in the extended variants of the phage shock protein (psp operon) in Escherichia coli and a few closely related species. Note that the designation phage shock protein PspE has been applied, incorrectly, in many instances where the genome lacks the phage shock regulon entirely.
Probab=99.71 E-value=1.2e-17 Score=132.59 Aligned_cols=81 Identities=23% Similarity=0.416 Sum_probs=66.7
Q ss_pred CCcEEEEeCChhhhhhccCCCcEeeCCCCCcccccCCCCCccccccccCCccCCCCCCcccHHHHHHHHhcCCCCCcEEE
Q 022972 98 SSKTLLDVRPSTERKKAWIKGSIWIPIFDIDDTFDAGSLPQKVTNFVMGGWWSGVPTLSYNKQFLSKVEEKLPKDTDLIV 177 (289)
Q Consensus 98 ~~~vlIDVRs~~Ey~~ghIPGAinIP~~~~~~~~~vgtlyk~~~~~~~~a~~~g~~~~~~~~~f~~~~~~~l~k~~~IVv 177 (289)
....+||||+++||.++|||||+|+|..++.+.. .++ ..+++++||+
T Consensus 17 ~~~~lIDvR~~~ef~~ghIpgAinip~~~l~~~l-------------------------------~~~--~~~~~~~vvl 63 (101)
T TIGR02981 17 AAEHWIDVRIPEQYQQEHIQGAINIPLKEIKEHI-------------------------------ATA--VPDKNDTVKL 63 (101)
T ss_pred cCCEEEECCCHHHHhcCCCCCCEECCHHHHHHHH-------------------------------HHh--CCCCCCeEEE
Confidence 3568999999999999999999999986543211 110 1346778999
Q ss_pred EcCCCCchHHHHHHHHHccCCCeeEccccHHHHHh
Q 022972 178 ACQKGLRSLAACELLYNAGYRNLFWVQGGLEAAEE 212 (289)
Q Consensus 178 yC~~G~RS~~aa~~L~~~G~~nV~~L~GG~~aw~~ 212 (289)
||++|.||..++..|+.+||++++.+ ||+++|.-
T Consensus 64 yC~~G~rS~~aa~~L~~~G~~~v~~~-GG~~~~~~ 97 (101)
T TIGR02981 64 YCNAGRQSGMAKDILLDMGYTHAENA-GGIKDIAM 97 (101)
T ss_pred EeCCCHHHHHHHHHHHHcCCCeEEec-CCHHHhhh
Confidence 99999999999999999999999885 99999963
No 43
>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated
Probab=99.70 E-value=4.4e-17 Score=157.67 Aligned_cols=103 Identities=29% Similarity=0.387 Sum_probs=87.3
Q ss_pred CCcceeCHHHHHHhhcCC-CcEEEEeCChhhhhhccCCCcEeeCCCCCcccccCCCCCccccccccCCccCCCCCCcccH
Q 022972 81 GKVKVLTPREAGYAVQLS-SKTLLDVRPSTERKKAWIKGSIWIPIFDIDDTFDAGSLPQKVTNFVMGGWWSGVPTLSYNK 159 (289)
Q Consensus 81 ~~~~~Is~~el~~~l~~~-~~vlIDVRs~~Ey~~ghIPGAinIP~~~~~~~~~vgtlyk~~~~~~~~a~~~g~~~~~~~~ 159 (289)
...+.|+++|+.++++.+ +.++||||++.||+.+|||||+|+|+.++....
T Consensus 284 ~~~~~Is~~el~~~l~~~~~~~lIDvR~~~ef~~ghIpGAinip~~~l~~~~---------------------------- 335 (392)
T PRK07878 284 AAGSTITPRELKEWLDSGKKIALIDVREPVEWDIVHIPGAQLIPKSEILSGE---------------------------- 335 (392)
T ss_pred CCCCccCHHHHHHHHhCCCCeEEEECCCHHHHhcCCCCCCEEcChHHhcchh----------------------------
Confidence 445789999999988654 578999999999999999999999987643210
Q ss_pred HHHHHHHhcCCCCCcEEEEcCCCCchHHHHHHHHHccCCCeeEccccHHHHHhCCCC
Q 022972 160 QFLSKVEEKLPKDTDLIVACQKGLRSLAACELLYNAGYRNLFWVQGGLEAAEEEDLV 216 (289)
Q Consensus 160 ~f~~~~~~~l~k~~~IVvyC~~G~RS~~aa~~L~~~G~~nV~~L~GG~~aw~~~gl~ 216 (289)
+ ...+++++++|+||++|.||..+++.|++.||+||+.|+||+.+|++...+
T Consensus 336 ----~-~~~l~~d~~iVvyC~~G~rS~~aa~~L~~~G~~~V~~L~GG~~~W~~~~~~ 387 (392)
T PRK07878 336 ----A-LAKLPQDRTIVLYCKTGVRSAEALAALKKAGFSDAVHLQGGVVAWAKQVDP 387 (392)
T ss_pred ----H-HhhCCCCCcEEEEcCCChHHHHHHHHHHHcCCCcEEEecCcHHHHHHhcCC
Confidence 0 135788999999999999999999999999999999999999999886443
No 44
>PRK10287 thiosulfate:cyanide sulfurtransferase; Provisional
Probab=99.69 E-value=2.7e-17 Score=131.28 Aligned_cols=79 Identities=24% Similarity=0.434 Sum_probs=65.6
Q ss_pred CcEEEEeCChhhhhhccCCCcEeeCCCCCcccccCCCCCccccccccCCccCCCCCCcccHHHHHHHHhc-CCCCCcEEE
Q 022972 99 SKTLLDVRPSTERKKAWIKGSIWIPIFDIDDTFDAGSLPQKVTNFVMGGWWSGVPTLSYNKQFLSKVEEK-LPKDTDLIV 177 (289)
Q Consensus 99 ~~vlIDVRs~~Ey~~ghIPGAinIP~~~~~~~~~vgtlyk~~~~~~~~a~~~g~~~~~~~~~f~~~~~~~-l~k~~~IVv 177 (289)
+-++||+|++.||..+|||||+|+|+.++.+ .+.+. .+++++||+
T Consensus 20 ~~~lIDvR~~~ef~~ghIpGAiniP~~~l~~----------------------------------~l~~l~~~~~~~IVl 65 (104)
T PRK10287 20 AEHWIDVRVPEQYQQEHVQGAINIPLKEVKE----------------------------------RIATAVPDKNDTVKL 65 (104)
T ss_pred CCEEEECCCHHHHhcCCCCccEECCHHHHHH----------------------------------HHHhcCCCCCCeEEE
Confidence 4579999999999999999999999764322 11111 245678999
Q ss_pred EcCCCCchHHHHHHHHHccCCCeeEccccHHHHHh
Q 022972 178 ACQKGLRSLAACELLYNAGYRNLFWVQGGLEAAEE 212 (289)
Q Consensus 178 yC~~G~RS~~aa~~L~~~G~~nV~~L~GG~~aw~~ 212 (289)
||++|.||..++..|..+||++++. .||+++|.-
T Consensus 66 yC~~G~rS~~aa~~L~~~G~~~v~~-~GG~~~~~~ 99 (104)
T PRK10287 66 YCNAGRQSGQAKEILSEMGYTHAEN-AGGLKDIAM 99 (104)
T ss_pred EeCCChHHHHHHHHHHHcCCCeEEe-cCCHHHHhh
Confidence 9999999999999999999999977 799999964
No 45
>PLN02723 3-mercaptopyruvate sulfurtransferase
Probab=99.69 E-value=7e-17 Score=152.32 Aligned_cols=112 Identities=17% Similarity=0.164 Sum_probs=88.7
Q ss_pred eeCHHHHHHhhcCCCcEEEEeCChhhh-----------hhccCCCcEeeCCCCCcccccCCCCCccccccccCCccCCCC
Q 022972 85 VLTPREAGYAVQLSSKTLLDVRPSTER-----------KKAWIKGSIWIPIFDIDDTFDAGSLPQKVTNFVMGGWWSGVP 153 (289)
Q Consensus 85 ~Is~~el~~~l~~~~~vlIDVRs~~Ey-----------~~ghIPGAinIP~~~~~~~~~vgtlyk~~~~~~~~a~~~g~~ 153 (289)
.++.+++...++.++.+|||+|++.|| ..||||||+|+|+.++.+..
T Consensus 191 ~~~~~~v~~~~~~~~~~iiD~R~~~ef~G~~~~~~~~~~~GHIPgAvnip~~~~~~~~---------------------- 248 (320)
T PLN02723 191 VWTLEQVKKNIEDKTYQHIDARSKARFDGAAPEPRKGIRSGHIPGSKCVPFPQMLDSS---------------------- 248 (320)
T ss_pred eecHHHHHHhhcCCCeEEEECCCcccccCCCCCCCCCCcCCcCCCCcccCHHHhcCCC----------------------
Confidence 478999998887778899999999998 46999999999986543211
Q ss_pred CCcccHHHHHHHHh--cCCCCCcEEEEcCCCCchHHHHHHHHHccCCCeeEccccHHHHHhC-CCCcc
Q 022972 154 TLSYNKQFLSKVEE--KLPKDTDLIVACQKGLRSLAACELLYNAGYRNLFWVQGGLEAAEEE-DLVRE 218 (289)
Q Consensus 154 ~~~~~~~f~~~~~~--~l~k~~~IVvyC~~G~RS~~aa~~L~~~G~~nV~~L~GG~~aw~~~-gl~~~ 218 (289)
+..+.++-+++... .++++++||+||++|.||..++..|+.+||+||+.++||+..|... ++|++
T Consensus 249 ~~~~~~~el~~~~~~~gi~~~~~iv~yC~sG~~A~~~~~~L~~~G~~~v~~YdGs~~eW~~~~~~Pv~ 316 (320)
T PLN02723 249 QTLLPAEELKKRFEQEGISLDSPIVASCGTGVTACILALGLHRLGKTDVPVYDGSWTEWGALPDTPVA 316 (320)
T ss_pred CCCCCHHHHHHHHHhcCCCCCCCEEEECCcHHHHHHHHHHHHHcCCCCeeEeCCCHHHHhcCCCCCcc
Confidence 11223333333333 3788999999999999999999999999999999999999999775 66765
No 46
>PRK11493 sseA 3-mercaptopyruvate sulfurtransferase; Provisional
Probab=99.68 E-value=1.2e-16 Score=147.96 Aligned_cols=111 Identities=17% Similarity=0.211 Sum_probs=86.5
Q ss_pred eeCHHHHHHhhcCCCcEEEEeCChhhhh-----------hccCCCcEeeCCCCCcccccCCCCCccccccccCCccCCCC
Q 022972 85 VLTPREAGYAVQLSSKTLLDVRPSTERK-----------KAWIKGSIWIPIFDIDDTFDAGSLPQKVTNFVMGGWWSGVP 153 (289)
Q Consensus 85 ~Is~~el~~~l~~~~~vlIDVRs~~Ey~-----------~ghIPGAinIP~~~~~~~~~vgtlyk~~~~~~~~a~~~g~~ 153 (289)
..+.+++...++.++.+|||+|++.||. .||||||+|+|..++.+.
T Consensus 154 ~~~~~~v~~~~~~~~~~llD~R~~~e~~G~~~~~~~~~~~GhIpgA~~i~~~~~~~~----------------------- 210 (281)
T PRK11493 154 VVRLTDVLLASHEKTAQIVDARPAARFNAEVDEPRPGLRRGHIPGALNVPWTELVRE----------------------- 210 (281)
T ss_pred eecHHHHHHhhcCCCcEEEeCCCccceeeeccCCCCCcccccCCCcCCCCHHHhcCC-----------------------
Confidence 4556676666666678999999999995 699999999998765321
Q ss_pred CCcccHHHHHHHHh--cCCCCCcEEEEcCCCCchHHHHHHHHHccCCCeeEccccHHHHHh-CCCCcc
Q 022972 154 TLSYNKQFLSKVEE--KLPKDTDLIVACQKGLRSLAACELLYNAGYRNLFWVQGGLEAAEE-EDLVRE 218 (289)
Q Consensus 154 ~~~~~~~f~~~~~~--~l~k~~~IVvyC~~G~RS~~aa~~L~~~G~~nV~~L~GG~~aw~~-~gl~~~ 218 (289)
+..+.++-+++... .++++++||+||++|.||..++..|+.+||+||++++||+..|.. .++|++
T Consensus 211 ~~~~~~~~l~~~~~~~g~~~~~~ii~yC~~G~~A~~~~~~l~~~G~~~v~~y~Gs~~eW~~~~~~P~~ 278 (281)
T PRK11493 211 GELKTTDELDAIFFGRGVSFDRPIIASCGSGVTAAVVVLALATLDVPNVKLYDGAWSEWGARADLPVE 278 (281)
T ss_pred CCcCCHHHHHHHHHhcCCCCCCCEEEECCcHHHHHHHHHHHHHcCCCCceeeCCCHHHHccCCCCCcC
Confidence 01122233333322 368889999999999999999999999999999999999999987 688876
No 47
>PRK07411 hypothetical protein; Validated
Probab=99.67 E-value=9.7e-17 Score=155.19 Aligned_cols=105 Identities=30% Similarity=0.349 Sum_probs=86.0
Q ss_pred CCcceeCHHHHHHhhcCC--CcEEEEeCChhhhhhccCCCcEeeCCCCCcccccCCCCCccccccccCCccCCCCCCccc
Q 022972 81 GKVKVLTPREAGYAVQLS--SKTLLDVRPSTERKKAWIKGSIWIPIFDIDDTFDAGSLPQKVTNFVMGGWWSGVPTLSYN 158 (289)
Q Consensus 81 ~~~~~Is~~el~~~l~~~--~~vlIDVRs~~Ey~~ghIPGAinIP~~~~~~~~~vgtlyk~~~~~~~~a~~~g~~~~~~~ 158 (289)
...+.|+++|+.++++.+ +.++||||++.||+.+|||||+|||+.++.+..
T Consensus 279 ~~~~~Is~~el~~~l~~~~~~~vlIDVR~~~E~~~ghIpGAiniP~~~l~~~~--------------------------- 331 (390)
T PRK07411 279 AEIPEMTVTELKALLDSGADDFVLIDVRNPNEYEIARIPGSVLVPLPDIENGP--------------------------- 331 (390)
T ss_pred cccCccCHHHHHHHHhCCCCCeEEEECCCHHHhccCcCCCCEEccHHHhhccc---------------------------
Confidence 456789999999988654 578999999999999999999999987654311
Q ss_pred HHHHHHHHhcCCCCCcEEEEcCCCCchHHHHHHHHHccCCCeeEccccHHHHHhCCCC
Q 022972 159 KQFLSKVEEKLPKDTDLIVACQKGLRSLAACELLYNAGYRNLFWVQGGLEAAEEEDLV 216 (289)
Q Consensus 159 ~~f~~~~~~~l~k~~~IVvyC~~G~RS~~aa~~L~~~G~~nV~~L~GG~~aw~~~gl~ 216 (289)
..+++ ..++++++||+||++|.||..+++.|+.+||+ ++.|.||+.+|+++..|
T Consensus 332 --~~~~l-~~l~~d~~IVvyC~~G~RS~~aa~~L~~~G~~-~~~l~GG~~~W~~~~~p 385 (390)
T PRK07411 332 --GVEKV-KELLNGHRLIAHCKMGGRSAKALGILKEAGIE-GTNVKGGITAWSREVDP 385 (390)
T ss_pred --chHHH-hhcCCCCeEEEECCCCHHHHHHHHHHHHcCCC-eEEecchHHHHHHhcCC
Confidence 01122 24567889999999999999999999999998 46899999999887544
No 48
>PRK09629 bifunctional thiosulfate sulfurtransferase/phosphatidylserine decarboxylase; Provisional
Probab=99.65 E-value=5.3e-16 Score=157.52 Aligned_cols=114 Identities=18% Similarity=0.108 Sum_probs=90.6
Q ss_pred ceeCHHHHHHhhcCCCcEEEEeCChhhhh--------hccCCCcEeeCCCCCcccccCCCCCccccccccCCccCCCCCC
Q 022972 84 KVLTPREAGYAVQLSSKTLLDVRPSTERK--------KAWIKGSIWIPIFDIDDTFDAGSLPQKVTNFVMGGWWSGVPTL 155 (289)
Q Consensus 84 ~~Is~~el~~~l~~~~~vlIDVRs~~Ey~--------~ghIPGAinIP~~~~~~~~~vgtlyk~~~~~~~~a~~~g~~~~ 155 (289)
..++++++.+.+++++.+|||+|+++||. .||||||+|+|+.++.+.. +.
T Consensus 147 ~~v~~e~v~~~l~~~~~~iIDaR~~~ef~G~~~~~~r~GHIPGAvnip~~~~~~~~----------------------~~ 204 (610)
T PRK09629 147 PTATREYLQSRLGAADLAIWDARAPTEYSGEKVVAAKGGHIPGAVNFEWTAGMDKA----------------------RN 204 (610)
T ss_pred ccccHHHHHHhhCCCCcEEEECCCccccCCcccccccCCCCCCCeecCHHHhcCCC----------------------CC
Confidence 46889999998877788999999999995 6999999999986532210 11
Q ss_pred cccHHHHHHHHhc--CCCCCcEEEEcCCCCchHHHHHHHHHccCCCeeEccccHHHHHhC-CCCccC
Q 022972 156 SYNKQFLSKVEEK--LPKDTDLIVACQKGLRSLAACELLYNAGYRNLFWVQGGLEAAEEE-DLVREG 219 (289)
Q Consensus 156 ~~~~~f~~~~~~~--l~k~~~IVvyC~~G~RS~~aa~~L~~~G~~nV~~L~GG~~aw~~~-gl~~~~ 219 (289)
.+.++-++++.+. ++++++||+||++|.||..+++.|+.+||+||+.++||+.+|... ++|+++
T Consensus 205 lk~~~el~~~~~~~Gi~~~~~VVvYC~sG~rAa~~~~~L~~lG~~~V~~YdGsw~eW~~~~~lPv~~ 271 (610)
T PRK09629 205 LRIRQDMPEILRDLGITPDKEVITHCQTHHRSGFTYLVAKALGYPRVKAYAGSWGEWGNHPDTPVEV 271 (610)
T ss_pred CCCHHHHHHHHHHcCCCCCCCEEEECCCChHHHHHHHHHHHcCCCCcEEeCCCHHHHhCCCCCcccc
Confidence 2233334444433 678999999999999999999999999999999999999999874 677663
No 49
>COG2897 SseA Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]
Probab=99.63 E-value=2.7e-15 Score=139.01 Aligned_cols=122 Identities=17% Similarity=0.163 Sum_probs=99.8
Q ss_pred CcceeCHHHHHHhhcCC-----CcEEEEeCCh--hhhhhccCCCcEeeCCCCCcccccCCCCCccccccccCCccCCCCC
Q 022972 82 KVKVLTPREAGYAVQLS-----SKTLLDVRPS--TERKKAWIKGSIWIPIFDIDDTFDAGSLPQKVTNFVMGGWWSGVPT 154 (289)
Q Consensus 82 ~~~~Is~~el~~~l~~~-----~~vlIDVRs~--~Ey~~ghIPGAinIP~~~~~~~~~vgtlyk~~~~~~~~a~~~g~~~ 154 (289)
....++++++.+.+..+ +..+++++.. .+|.++|||||+++++..+.... .+.++
T Consensus 9 ~~~lVs~~wl~~~l~~~~~~~~d~~~~~~~~~~~~~Y~~~HIPGAv~~d~~~~~~~~------------------~~~~~ 70 (285)
T COG2897 9 SEFLVSPDWLAENLDDPAVVIVDARIILPDPDDAEEYLEGHIPGAVFFDWEADLSDP------------------VPLPH 70 (285)
T ss_pred cceEEcHHHHHhhccccccccCceEEEeCCcchHHHHHhccCCCCEecCHHHhhcCC------------------CCCCC
Confidence 45689999999988755 5666666665 89999999999999998765432 12567
Q ss_pred CcccHHHHHHHHhc--CCCCCcEEEEcC-CCCchHHHHHHHHHccCCCeeEccccHHHHHhCCCCccCCC
Q 022972 155 LSYNKQFLSKVEEK--LPKDTDLIVACQ-KGLRSLAACELLYNAGYRNLFWVQGGLEAAEEEDLVREGPQ 221 (289)
Q Consensus 155 ~~~~~~f~~~~~~~--l~k~~~IVvyC~-~G~RS~~aa~~L~~~G~~nV~~L~GG~~aw~~~gl~~~~~~ 221 (289)
|.+.++.++++... +.++++||+|.. ++.-+.+++|.|+.+|++||++|+||+++|+++|+|++...
T Consensus 71 ~lp~~e~fa~~~~~~GI~~d~tVVvYdd~~~~~A~ra~W~l~~~Gh~~V~iLdGG~~~W~~~g~p~~~~~ 140 (285)
T COG2897 71 MLPSPEQFAKLLGELGIRNDDTVVVYDDGGGFFAARAWWLLRYLGHENVRILDGGLPAWKAAGLPLETEP 140 (285)
T ss_pred CCCCHHHHHHHHHHcCCCCCCEEEEECCCCCeehHHHHHHHHHcCCCceEEecCCHHHHHHcCCCccCCC
Confidence 88887777776665 788899999996 44579999999999999999999999999999999998633
No 50
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=99.62 E-value=7.8e-16 Score=147.22 Aligned_cols=97 Identities=27% Similarity=0.390 Sum_probs=81.0
Q ss_pred CCcceeCHHHHHHhhcCCCcEEEEeCChhhhhhccCCCcEeeCCCCCcccccCCCCCccccccccCCccCCCCCCcccHH
Q 022972 81 GKVKVLTPREAGYAVQLSSKTLLDVRPSTERKKAWIKGSIWIPIFDIDDTFDAGSLPQKVTNFVMGGWWSGVPTLSYNKQ 160 (289)
Q Consensus 81 ~~~~~Is~~el~~~l~~~~~vlIDVRs~~Ey~~ghIPGAinIP~~~~~~~~~vgtlyk~~~~~~~~a~~~g~~~~~~~~~ 160 (289)
+....++++++.+. .++.++||||++.||+.+|||||+|+|+.++.+...
T Consensus 258 ~~~~~i~~~~~~~~--~~~~~IIDVR~~~ef~~ghIpgAinip~~~l~~~~~---------------------------- 307 (355)
T PRK05597 258 GFGEVLDVPRVSAL--PDGVTLIDVREPSEFAAYSIPGAHNVPLSAIREGAN---------------------------- 307 (355)
T ss_pred CcccccCHHHHHhc--cCCCEEEECCCHHHHccCcCCCCEEeCHHHhhhccc----------------------------
Confidence 44567888988854 346899999999999999999999999876543210
Q ss_pred HHHHHHhcCCCCCcEEEEcCCCCchHHHHHHHHHccCCCeeEccccHHHHHh
Q 022972 161 FLSKVEEKLPKDTDLIVACQKGLRSLAACELLYNAGYRNLFWVQGGLEAAEE 212 (289)
Q Consensus 161 f~~~~~~~l~k~~~IVvyC~~G~RS~~aa~~L~~~G~~nV~~L~GG~~aw~~ 212 (289)
...+++++++|+||++|.||..+++.|+..||+||+.|+||+.+|++
T Consensus 308 -----~~~~~~~~~IvvyC~~G~rS~~Aa~~L~~~G~~nV~~L~GGi~~W~~ 354 (355)
T PRK05597 308 -----PPSVSAGDEVVVYCAAGVRSAQAVAILERAGYTGMSSLDGGIEGWLD 354 (355)
T ss_pred -----cccCCCCCeEEEEcCCCHHHHHHHHHHHHcCCCCEEEecCcHHHHhh
Confidence 01356788999999999999999999999999999999999999975
No 51
>cd01446 DSP_MapKP N-terminal regulatory rhodanese domain of dual specificity phosphatases (DSP), such as Mapk Phosphatase. This domain is believed to determine substrate specificity by binding the substrate, such as ERK2, and activating the C-terminal catalytic domain by inducing a conformational change. This domain has homology to the Rhodanese Homology Domain.
Probab=99.62 E-value=1.4e-15 Score=125.15 Aligned_cols=112 Identities=15% Similarity=0.111 Sum_probs=76.7
Q ss_pred eCHHHHHHhhcC--CCcEEEEeCChhhhhhccCCCcEeeCCCCCcccccCCCCCccccccccCCccCCCCCCcccHHHHH
Q 022972 86 LTPREAGYAVQL--SSKTLLDVRPSTERKKAWIKGSIWIPIFDIDDTFDAGSLPQKVTNFVMGGWWSGVPTLSYNKQFLS 163 (289)
Q Consensus 86 Is~~el~~~l~~--~~~vlIDVRs~~Ey~~ghIPGAinIP~~~~~~~~~vgtlyk~~~~~~~~a~~~g~~~~~~~~~f~~ 163 (289)
|+|+|+.++++. ++.++||||++.+|..+|||||+|+|+..+..+... .+. .....+...++..+
T Consensus 2 is~~~l~~~l~~~~~~~~iiDvR~~~~~~~~hI~~ai~i~~~~~~~~~~~------------~~~-~~~~~~~~~~~~~~ 68 (132)
T cd01446 2 IDCAWLAALLREGGERLLLLDCRPFLEYSSSHIRGAVNVCCPTILRRRLQ------------GGK-ILLQQLLSCPEDRD 68 (132)
T ss_pred cCHHHHHHHHhcCCCCEEEEECCCHHHHhhCcccCcEecChHHHHHHhhc------------ccc-hhhhhhcCCHHHHH
Confidence 789999999875 478999999999999999999999998753321100 000 00001122333334
Q ss_pred HHHhcCCCCCcEEEEcCCCCc---------hHHHHHHHHH--ccCCCeeEccccHHHHHh
Q 022972 164 KVEEKLPKDTDLIVACQKGLR---------SLAACELLYN--AGYRNLFWVQGGLEAAEE 212 (289)
Q Consensus 164 ~~~~~l~k~~~IVvyC~~G~R---------S~~aa~~L~~--~G~~nV~~L~GG~~aw~~ 212 (289)
.+... ++++|||||.++.+ +..++..|.. .|+.+|+.|+||+.+|.+
T Consensus 69 ~l~~~--~~~~VVvYd~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~L~GG~~~w~~ 126 (132)
T cd01446 69 RLRRG--ESLAVVVYDESSSDRERLREDSTAESVLGKLLRKLQEGCSVYLLKGGFEQFSS 126 (132)
T ss_pred HHhcC--CCCeEEEEeCCCcchhhccccchHHHHHHHHHHhcCCCceEEEEcchHHHHHh
Confidence 44322 56799999987664 5556666666 366789999999999976
No 52
>COG2897 SseA Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]
Probab=99.59 E-value=4.2e-15 Score=137.77 Aligned_cols=115 Identities=22% Similarity=0.257 Sum_probs=94.8
Q ss_pred cceeCHHHHHHhhcCCCcEEEEeCChhhhhh----------ccCCCcEeeCCCCCcccccCCCCCccccccccCCccCCC
Q 022972 83 VKVLTPREAGYAVQLSSKTLLDVRPSTERKK----------AWIKGSIWIPIFDIDDTFDAGSLPQKVTNFVMGGWWSGV 152 (289)
Q Consensus 83 ~~~Is~~el~~~l~~~~~vlIDVRs~~Ey~~----------ghIPGAinIP~~~~~~~~~vgtlyk~~~~~~~~a~~~g~ 152 (289)
....++++.....+.+..+|||+|+++||.. ||||||+|+|..++.+.
T Consensus 155 ~~~~~~~~~~~~~~~~~~~liDaR~~~rf~G~~~ep~~~~~GHIPGAiNipw~~~~~~---------------------- 212 (285)
T COG2897 155 KAVVDATLVADALEVPAVLLIDARSPERFRGKEPEPRDGKAGHIPGAINIPWTDLVDD---------------------- 212 (285)
T ss_pred cccCCHHHHHHHhcCCCeEEEecCCHHHhCCCCCCCCCCCCCCCCCCcCcCHHHHhcC----------------------
Confidence 4466778888877777889999999999998 99999999999876541
Q ss_pred CCCcccHHHHHHHHh--cCCCCCcEEEEcCCCCchHHHHHHHHHccCCCeeEccccHHHHHhC-CCCccC
Q 022972 153 PTLSYNKQFLSKVEE--KLPKDTDLIVACQKGLRSLAACELLYNAGYRNLFWVQGGLEAAEEE-DLVREG 219 (289)
Q Consensus 153 ~~~~~~~~f~~~~~~--~l~k~~~IVvyC~~G~RS~~aa~~L~~~G~~nV~~L~GG~~aw~~~-gl~~~~ 219 (289)
..+.+.++..+.+.+ .+++++++|+||++|.||+..+..|+.+|+.++..++|++..|-+. +.|+++
T Consensus 213 ~~~~~~~~~~~~l~~~~gi~~~~~vI~yCgsG~~As~~~~al~~lg~~~~~lYdGSWsEWg~~~~~PV~~ 282 (285)
T COG2897 213 GGLFKSPEEIARLYADAGIDPDKEVIVYCGSGVRASVTWLALAELGGPNNRLYDGSWSEWGSDPDRPVET 282 (285)
T ss_pred CCccCcHHHHHHHHHhcCCCCCCCEEEEcCCchHHHHHHHHHHHhCCCCcccccChHHHhhcCCCCcccc
Confidence 123455666666663 4899999999999999999999999999999899999999999774 557653
No 53
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Probab=99.58 E-value=1.8e-15 Score=145.40 Aligned_cols=95 Identities=26% Similarity=0.303 Sum_probs=77.7
Q ss_pred ceeCHHHHHHhhcCCCcEEEEeCChhhhhhccCC---CcEeeCCCCCcccccCCCCCccccccccCCccCCCCCCcccHH
Q 022972 84 KVLTPREAGYAVQLSSKTLLDVRPSTERKKAWIK---GSIWIPIFDIDDTFDAGSLPQKVTNFVMGGWWSGVPTLSYNKQ 160 (289)
Q Consensus 84 ~~Is~~el~~~l~~~~~vlIDVRs~~Ey~~ghIP---GAinIP~~~~~~~~~vgtlyk~~~~~~~~a~~~g~~~~~~~~~ 160 (289)
..++++|+.+++++++.++||||++.||+.+||| ||+|||+.++.+.. +
T Consensus 271 ~~~~~~el~~~l~~~~~~lIDVR~~~E~~~ghI~~~~gAinIPl~~l~~~~----------------------------~ 322 (370)
T PRK05600 271 ARTDTTSLIDATLNGSATLLDVREPHEVLLKDLPEGGASLKLPLSAITDDA----------------------------D 322 (370)
T ss_pred cccCHHHHHHHHhcCCeEEEECCCHHHhhhccCCCCCccEeCcHHHhhcch----------------------------h
Confidence 3789999999988777899999999999999998 69999988764321 0
Q ss_pred HHHHHHhcCCCCCcEEEEcCCCCchHHHHHHHHHccCCC-eeEccccHH
Q 022972 161 FLSKVEEKLPKDTDLIVACQKGLRSLAACELLYNAGYRN-LFWVQGGLE 208 (289)
Q Consensus 161 f~~~~~~~l~k~~~IVvyC~~G~RS~~aa~~L~~~G~~n-V~~L~GG~~ 208 (289)
+.+++ ..++++ +|||||++|.||..++..|+..||++ |+.|+||+.
T Consensus 323 ~~~~l-~~~~~~-~Ivv~C~sG~RS~~Aa~~L~~~G~~~~v~~l~GG~~ 369 (370)
T PRK05600 323 ILHAL-SPIDGD-NVVVYCASGIRSADFIEKYSHLGHELTLHNLPGGVN 369 (370)
T ss_pred hhhhc-cccCCC-cEEEECCCChhHHHHHHHHHHcCCCCceEEeccccC
Confidence 11111 134555 99999999999999999999999986 999999985
No 54
>COG1054 Predicted sulfurtransferase [General function prediction only]
Probab=99.34 E-value=1e-12 Score=121.15 Aligned_cols=102 Identities=17% Similarity=0.316 Sum_probs=87.7
Q ss_pred cceeCHHHHHHhhcCCCcEEEEeCChhhhhhccCCCcEeeCCCCCcccccCCCCCccccccccCCccCCCCCCcccHHHH
Q 022972 83 VKVLTPREAGYAVQLSSKTLLDVRPSTERKKAWIKGSIWIPIFDIDDTFDAGSLPQKVTNFVMGGWWSGVPTLSYNKQFL 162 (289)
Q Consensus 83 ~~~Is~~el~~~l~~~~~vlIDVRs~~Ey~~ghIPGAinIP~~~~~~~~~vgtlyk~~~~~~~~a~~~g~~~~~~~~~f~ 162 (289)
-..|+|++..+++.+++.++||+|..-||+-||..||++.+..++.+ .|+.+
T Consensus 112 G~yl~p~~wn~~l~D~~~vviDtRN~YE~~iG~F~gAv~p~~~tFre----------------------------fP~~v 163 (308)
T COG1054 112 GTYLSPKDWNELLSDPDVVVIDTRNDYEVAIGHFEGAVEPDIETFRE----------------------------FPAWV 163 (308)
T ss_pred cCccCHHHHHHHhcCCCeEEEEcCcceeEeeeeecCccCCChhhhhh----------------------------hHHHH
Confidence 45899999999999999999999999999999999999999887653 13444
Q ss_pred HHHHhcCCCCCcEEEEcCCCCchHHHHHHHHHccCCCeeEccccHHHHHhC
Q 022972 163 SKVEEKLPKDTDLIVACQKGLRSLAACELLYNAGYRNLFWVQGGLEAAEEE 213 (289)
Q Consensus 163 ~~~~~~l~k~~~IVvyC~~G~RS~~aa~~L~~~G~~nV~~L~GG~~aw~~~ 213 (289)
.+..+. -++++|+.||.||-|...+..+|...||++||.|+||+-.|.+.
T Consensus 164 ~~~~~~-~~~KkVvmyCTGGIRCEKas~~m~~~GF~eVyhL~GGIl~Y~e~ 213 (308)
T COG1054 164 EENLDL-LKDKKVVMYCTGGIRCEKASAWMKENGFKEVYHLEGGILKYLED 213 (308)
T ss_pred HHHHHh-ccCCcEEEEcCCceeehhhHHHHHHhcchhhhcccchHHHHhhh
Confidence 443322 36679999999999999999999999999999999999999764
No 55
>COG2603 Predicted ATPase [General function prediction only]
Probab=99.34 E-value=8.2e-14 Score=127.67 Aligned_cols=146 Identities=21% Similarity=0.184 Sum_probs=106.4
Q ss_pred cCCCcEEEEeCChhhhhhccCCCcEeeCCCCCcccccCCCCCccccccccCCccCCCCCCcccHHHHHHHHhcCCCCCcE
Q 022972 96 QLSSKTLLDVRPSTERKKAWIKGSIWIPIFDIDDTFDAGSLPQKVTNFVMGGWWSGVPTLSYNKQFLSKVEEKLPKDTDL 175 (289)
Q Consensus 96 ~~~~~vlIDVRs~~Ey~~ghIPGAinIP~~~~~~~~~vgtlyk~~~~~~~~a~~~g~~~~~~~~~f~~~~~~~l~k~~~I 175 (289)
...+..+||||+|-||..|+.|+++|+|..+.+++..|||.|||.++-.+.+-..+.--.....+.+...++. -.+.|+
T Consensus 12 ~~~~~~lid~rap~ef~~g~~~ia~nl~~~ndder~~Igt~yKk~~~~~a~alg~~~vcG~i~~~~l~ask~f-~e~~~~ 90 (334)
T COG2603 12 LLADTPLIDVRAPIEFENGAMPIAINLPLMNDDERQEIGTCYKKQGQDAAKALGHALVCGEIRQQRLEASKAF-QEENPV 90 (334)
T ss_pred HhcCCceeeccchHHHhcccchhhhccccccchHHHHHHHHHhhcCcHHHHHHHHHHHHhHHHHHHHHHHHHH-HHhCCc
Confidence 3557899999999999999999999999999999999999999977533322211111122223333333322 233466
Q ss_pred EEEc-CCCCchHHHHHHH-HHccCCCeeEccccHHHHHhCCCCcc-CCCCCccccccccccccchhhhhccc
Q 022972 176 IVAC-QKGLRSLAACELL-YNAGYRNLFWVQGGLEAAEEEDLVRE-GPQPLKFAGIGGLSEFLGYTSQLCYP 244 (289)
Q Consensus 176 VvyC-~~G~RS~~aa~~L-~~~G~~nV~~L~GG~~aw~~~gl~~~-~~~~~~~~~~~G~t~~~Gkt~~l~~l 244 (289)
-++| +||.||...+.+| +..|++ .-.+.||+++.+.--+... ..-..+...++|+|| .|||.+.+.+
T Consensus 91 Gi~c~rgg~rsk~v~~~l~~~~g~~-~~r~iGGeKalrt~~~~a~~~~i~~k~~il~g~Tg-cgkt~lve~l 160 (334)
T COG2603 91 GILCARGGLRSKIVQKWLGYAAGID-YPRVIGGEKALRTFAIQATIKEIAQKDFILCGCTG-CGKTELVEQL 160 (334)
T ss_pred ceeeccccchhHHHHHHHHHHHHhh-hhhhhchHHHHHHHHHHHHHHHhccCCEEEeCCCC-CcHHHHHHhC
Confidence 6669 7999999999999 778986 7788999999987422221 233567778888885 9999999988
No 56
>PRK01269 tRNA s(4)U8 sulfurtransferase; Provisional
Probab=99.29 E-value=3e-12 Score=127.14 Aligned_cols=73 Identities=16% Similarity=0.344 Sum_probs=63.1
Q ss_pred CCCcEEEEeCChhhhhhccCCC----cEeeCCCCCcccccCCCCCccccccccCCccCCCCCCcccHHHHHHHHhcCCCC
Q 022972 97 LSSKTLLDVRPSTERKKAWIKG----SIWIPIFDIDDTFDAGSLPQKVTNFVMGGWWSGVPTLSYNKQFLSKVEEKLPKD 172 (289)
Q Consensus 97 ~~~~vlIDVRs~~Ey~~ghIPG----AinIP~~~~~~~~~vgtlyk~~~~~~~~a~~~g~~~~~~~~~f~~~~~~~l~k~ 172 (289)
.++.++||||+++||+.+|||| |+|+|+.++.+. + ..++++
T Consensus 405 ~~~~~lIDVR~~~E~~~~hI~g~~~~a~niP~~~l~~~----------------------------------~-~~l~~~ 449 (482)
T PRK01269 405 PPDDVIIDIRSPDEQEDKPLKLEGVEVKSLPFYKLSTQ----------------------------------F-GDLDQS 449 (482)
T ss_pred CCCCEEEECCCHHHHhcCCCCCCCceEEECCHHHHHHH----------------------------------H-hhcCCC
Confidence 3578999999999999999999 999998764321 1 246888
Q ss_pred CcEEEEcCCCCchHHHHHHHHHccCCCeeEcc
Q 022972 173 TDLIVACQKGLRSLAACELLYNAGYRNLFWVQ 204 (289)
Q Consensus 173 ~~IVvyC~~G~RS~~aa~~L~~~G~~nV~~L~ 204 (289)
+++++||++|.||..++..|+.+||+||+.+.
T Consensus 450 ~~iivyC~~G~rS~~aa~~L~~~G~~nv~~y~ 481 (482)
T PRK01269 450 KTYLLYCDRGVMSRLQALYLREQGFSNVKVYR 481 (482)
T ss_pred CeEEEECCCCHHHHHHHHHHHHcCCccEEecC
Confidence 89999999999999999999999999998764
No 57
>KOG1529 consensus Mercaptopyruvate sulfurtransferase/thiosulfate sulfurtransferase [Defense mechanisms]
Probab=99.24 E-value=6.3e-11 Score=108.79 Aligned_cols=120 Identities=10% Similarity=0.076 Sum_probs=96.6
Q ss_pred ceeCHHHHHHhhcCCCcEEEEeC---------ChhhhhhccCCCcEeeCCCCCcccccCCCCCccccccccCCccCCCCC
Q 022972 84 KVLTPREAGYAVQLSSKTLLDVR---------PSTERKKAWIKGSIWIPIFDIDDTFDAGSLPQKVTNFVMGGWWSGVPT 154 (289)
Q Consensus 84 ~~Is~~el~~~l~~~~~vlIDVR---------s~~Ey~~ghIPGAinIP~~~~~~~~~vgtlyk~~~~~~~~a~~~g~~~ 154 (289)
..++++.+.+++.+.+..|||.. ...||...|||||.++.++....+. ...++
T Consensus 5 ~iv~~~~v~~~~~~~~~~iLDaSw~~~~~~~~~~~e~~~~hipga~~fdld~~~~~s------------------~~~~~ 66 (286)
T KOG1529|consen 5 SIVSVKWVMENLGNHGLRILDASWYFPPLRRIAEFEFLERHIPGASHFDLDIISYPS------------------SPYRH 66 (286)
T ss_pred cccChHHHHHhCcCCCeEEEeeeeecCchhhhhhhhhhhccCCCceeeeccccccCC------------------Ccccc
Confidence 36788899998877789999987 4568899999999999988766543 23456
Q ss_pred CcccHHHHHHHHhc--CCCCCcEEEEcC--CCC-chHHHHHHHHHccCCCeeEccccHHHHHhCCCCccCCC
Q 022972 155 LSYNKQFLSKVEEK--LPKDTDLIVACQ--KGL-RSLAACELLYNAGYRNLFWVQGGLEAAEEEDLVREGPQ 221 (289)
Q Consensus 155 ~~~~~~f~~~~~~~--l~k~~~IVvyC~--~G~-RS~~aa~~L~~~G~~nV~~L~GG~~aw~~~gl~~~~~~ 221 (289)
|.+.++-+++..+. +++++.+|||.+ +|+ -|.+++|.++.+|+++|+.|+||+.+|++.|+|+....
T Consensus 67 ~lp~~e~Fa~y~~~lGi~n~d~vViYd~~~~Gm~~Asrv~W~fr~fGh~~VslL~GG~~~Wk~~g~~~~s~~ 138 (286)
T KOG1529|consen 67 MLPTAEHFAEYASRLGVDNGDHVVIYDRGDGGMFSASRVWWTFRVFGHTKVSLLNGGFRAWKAAGGPVDSSK 138 (286)
T ss_pred cCccHHHHHHHHHhcCCCCCCeEEEEcCCCcceeehhhHHHHHHHhCccEEEEecCcHHHHHHcCCcccccc
Confidence 66665544444434 678889999998 888 58889999999999999999999999999999988533
No 58
>KOG2017 consensus Molybdopterin synthase sulfurylase [Coenzyme transport and metabolism]
Probab=99.11 E-value=7.2e-11 Score=110.80 Aligned_cols=103 Identities=23% Similarity=0.314 Sum_probs=83.3
Q ss_pred CCcceeCHHHHHHhhcC-CCcEEEEeCChhhhhhccCCCcEeeCCCCCcccccCCCCCccccccccCCccCCCCCCcccH
Q 022972 81 GKVKVLTPREAGYAVQL-SSKTLLDVRPSTERKKAWIKGSIWIPIFDIDDTFDAGSLPQKVTNFVMGGWWSGVPTLSYNK 159 (289)
Q Consensus 81 ~~~~~Is~~el~~~l~~-~~~vlIDVRs~~Ey~~ghIPGAinIP~~~~~~~~~vgtlyk~~~~~~~~a~~~g~~~~~~~~ 159 (289)
+...+|+..|..+.+++ +..+++||||+.||+..|+|+|+|||+.+++.+..
T Consensus 314 ~~~~Rvsv~d~k~il~~~~~h~llDvRp~~~~eI~~lP~avNIPL~~l~~~~~--------------------------- 366 (427)
T KOG2017|consen 314 EPDERVSVTDYKRILDSGAKHLLLDVRPSHEYEICRLPEAVNIPLKELRSRSG--------------------------- 366 (427)
T ss_pred ChhhcccHHHHHHHHhcCCCeEEEeccCcceEEEEecccccccchhhhhhhhh---------------------------
Confidence 44568999999998876 57899999999999999999999999998876541
Q ss_pred HHHHHHHhcC-CCCCcEEEEcCCCCchHHHHHHHHHccC-CCeeEccccHHHHHhC
Q 022972 160 QFLSKVEEKL-PKDTDLIVACQKGLRSLAACELLYNAGY-RNLFWVQGGLEAAEEE 213 (289)
Q Consensus 160 ~f~~~~~~~l-~k~~~IVvyC~~G~RS~~aa~~L~~~G~-~nV~~L~GG~~aw~~~ 213 (289)
++....+ ...++|+|.|+.|..|+.+++.|++... .+|..+.||+++|...
T Consensus 367 ---~~~~~~~~~~~~~I~ViCrrGNdSQ~Av~~Lre~~~~~~vrDvigGl~~w~~~ 419 (427)
T KOG2017|consen 367 ---KKLQGDLNTESKDIFVICRRGNDSQRAVRILREKFPDSSVRDVIGGLKAWAAK 419 (427)
T ss_pred ---hhhcccccccCCCEEEEeCCCCchHHHHHHHHhhCCchhhhhhhhHHHHHHHh
Confidence 1111122 2556899999999999999999998655 3577899999999775
No 59
>KOG3772 consensus M-phase inducer phosphatase [Cell cycle control, cell division, chromosome partitioning]
Probab=99.08 E-value=1.4e-10 Score=108.51 Aligned_cols=105 Identities=21% Similarity=0.212 Sum_probs=77.3
Q ss_pred CCcceeCHHHHHHhhcCC------CcEEEEeCChhhhhhccCCCcEeeCCCCCcccccCCCCCccccccccCCccCCCCC
Q 022972 81 GKVKVLTPREAGYAVQLS------SKTLLDVRPSTERKKAWIKGSIWIPIFDIDDTFDAGSLPQKVTNFVMGGWWSGVPT 154 (289)
Q Consensus 81 ~~~~~Is~~el~~~l~~~------~~vlIDVRs~~Ey~~ghIPGAinIP~~~~~~~~~vgtlyk~~~~~~~~a~~~g~~~ 154 (289)
..++.||++.+..+++.. .++|||+|-|-||..|||+||+||+-.+...... +.+.
T Consensus 153 ~~~k~Is~etl~~ll~~~~~~~~~~~~iiDcR~pyEY~GGHIkgavnl~~~~~~~~~f----~~~~-------------- 214 (325)
T KOG3772|consen 153 QDLKYISPETLKGLLQGKFSDFFDKFIIIDCRYPYEYEGGHIKGAVNLYSKELLQDFF----LLKD-------------- 214 (325)
T ss_pred ccccccCHHHHHHHHHhccccceeeEEEEEeCCcccccCcccccceecccHhhhhhhh----cccc--------------
Confidence 568899999999988631 3679999999999999999999999765332210 0000
Q ss_pred CcccHHHHHHHHhcCCCCCcEEEEcC-CCCchHHHHHHHHH------------ccCCCeeEccccHHHHHhC
Q 022972 155 LSYNKQFLSKVEEKLPKDTDLIVACQ-KGLRSLAACELLYN------------AGYRNLFWVQGGLEAAEEE 213 (289)
Q Consensus 155 ~~~~~~f~~~~~~~l~k~~~IVvyC~-~G~RS~~aa~~L~~------------~G~~nV~~L~GG~~aw~~~ 213 (289)
....-.+..-+|+||. +-.|...+|..|+. +-|..+|+|+|||+.|-..
T Consensus 215 ----------~~~~~~~~~i~IFhCefSq~RGP~mA~~lr~iDR~r~~~~yp~l~ypE~yiL~gGYk~ff~~ 276 (325)
T KOG3772|consen 215 ----------GVPSGSKRVILIFHCEFSQERGPKMARHLRNIDRDRNSNDYPKLSYPELYILDGGYKEFFSN 276 (325)
T ss_pred ----------ccccccCceeEEEEeeeccccCHHHHHHHHHhhhhhhcccCcccccchheeecccHHHHHHh
Confidence 0000012346899995 77799999999994 3566799999999999764
No 60
>KOG1529 consensus Mercaptopyruvate sulfurtransferase/thiosulfate sulfurtransferase [Defense mechanisms]
Probab=98.63 E-value=7.1e-08 Score=88.85 Aligned_cols=93 Identities=17% Similarity=0.187 Sum_probs=71.6
Q ss_pred CCCcEEEEeCChhhhh-----------hccCCCcEeeCCCCCcccccCCCCCccccccccCCccCCCCCCcc-cHHHHHH
Q 022972 97 LSSKTLLDVRPSTERK-----------KAWIKGSIWIPIFDIDDTFDAGSLPQKVTNFVMGGWWSGVPTLSY-NKQFLSK 164 (289)
Q Consensus 97 ~~~~vlIDVRs~~Ey~-----------~ghIPGAinIP~~~~~~~~~vgtlyk~~~~~~~~a~~~g~~~~~~-~~~f~~~ 164 (289)
..++..+|.|+..+|. .+|||||+|+|+.++-... +..+ ..+....
T Consensus 170 ~~~~~~~DaRs~grF~Gt~p~~~~~~~ggHIpGa~n~P~~~~~~~~----------------------g~~k~~edl~~~ 227 (286)
T KOG1529|consen 170 TKNFQYLDARSKGRFDGTEPEPRSGATGGHIPGAINFPFDEVLDPD----------------------GFIKPAEDLKHL 227 (286)
T ss_pred cccceeeeccccccccccCCCCcccCcCccCCCcccCChHHhcccc----------------------cccCCHHHHHHH
Confidence 4578999999988883 4899999999998754321 1111 2233333
Q ss_pred HHh-cCCCCCcEEEEcCCCCchHHHHHHHHHccCCCeeEccccHHHHHh
Q 022972 165 VEE-KLPKDTDLIVACQKGLRSLAACELLYNAGYRNLFWVQGGLEAAEE 212 (289)
Q Consensus 165 ~~~-~l~k~~~IVvyC~~G~RS~~aa~~L~~~G~~nV~~L~GG~~aw~~ 212 (289)
+.+ .+..++|+++-|..|..+...+-.|.+.| .++..++|++..|.-
T Consensus 228 f~~~~l~~~~p~~~sC~~Gisa~~i~~al~r~g-~~~~lYdGS~~Ew~~ 275 (286)
T KOG1529|consen 228 FAQKGLKLSKPVIVSCGTGISASIIALALERSG-PDAKLYDGSWTEWAL 275 (286)
T ss_pred HHhcCcccCCCEEEeeccchhHHHHHHHHHhcC-CCcceecccHHHHhh
Confidence 332 36678999999999999999999999999 679999999999964
No 61
>COG5105 MIH1 Mitotic inducer, protein phosphatase [Cell division and chromosome partitioning]
Probab=98.25 E-value=2.2e-06 Score=80.10 Aligned_cols=101 Identities=16% Similarity=0.228 Sum_probs=76.0
Q ss_pred CCCcceeCHHHHHHhhcCC------CcEEEEeCChhhhhhccCCCcEeeCCCCCcccccCCCCCccccccccCCccCCCC
Q 022972 80 DGKVKVLTPREAGYAVQLS------SKTLLDVRPSTERKKAWIKGSIWIPIFDIDDTFDAGSLPQKVTNFVMGGWWSGVP 153 (289)
Q Consensus 80 ~~~~~~Is~~el~~~l~~~------~~vlIDVRs~~Ey~~ghIPGAinIP~~~~~~~~~vgtlyk~~~~~~~~a~~~g~~ 153 (289)
....++|++|.++..++.. +.+|||.|=+-||..|||-+|+||.-.+
T Consensus 238 ~Ds~~RIs~etlk~vl~g~~~~~f~kCiIIDCRFeYEY~GGHIinaVNi~s~~--------------------------- 290 (427)
T COG5105 238 SDSIQRISVETLKQVLEGMYNIDFLKCIIIDCRFEYEYRGGHIINAVNISSTK--------------------------- 290 (427)
T ss_pred ccchhhcCHHHHHHHHhchhhhhhhceeEEeecceeeecCceeeeeeecchHH---------------------------
Confidence 3568899999999887531 5789999999999999999999997432
Q ss_pred CCcccHHHHHHHHhc-CCCCCcEEEEcC-CCCchHHHHHHHHHcc------------CCCeeEccccHHHHHhC
Q 022972 154 TLSYNKQFLSKVEEK-LPKDTDLIVACQ-KGLRSLAACELLYNAG------------YRNLFWVQGGLEAAEEE 213 (289)
Q Consensus 154 ~~~~~~~f~~~~~~~-l~k~~~IVvyC~-~G~RS~~aa~~L~~~G------------~~nV~~L~GG~~aw~~~ 213 (289)
+..-.+..+ +....-+|+.|. +..|+..+|..|+.+. |+.||+|+|||++.-..
T Consensus 291 ------~l~~~F~hkplThp~aLifHCEfSshRaP~LA~HlRN~DR~~N~dhYP~L~yPevyIl~GGYk~fy~n 358 (427)
T COG5105 291 ------KLGLLFRHKPLTHPRALIFHCEFSSHRAPRLAQHLRNMDRMKNPDHYPLLTYPEVYILEGGYKKFYSN 358 (427)
T ss_pred ------HHHHHHHhccccCceeEEEEeecccccchhHHHHHhhhhhhcCcccCcccccceEEEecCcHHHHhhc
Confidence 111111112 223346999995 7789999999999763 45799999999998653
No 62
>PF04273 DUF442: Putative phosphatase (DUF442); InterPro: IPR005939 Although this domain is uncharacterised it seems likely that it performs a phosphatase function.; GO: 0016787 hydrolase activity; PDB: 2F46_A 3GXH_B 3GXG_B.
Probab=96.56 E-value=0.0069 Score=48.79 Aligned_cols=80 Identities=21% Similarity=0.273 Sum_probs=40.4
Q ss_pred ceeCHHHHHHhhcCCCcEEEEeCChhhhhhccCCC--------------cEeeCCCCCcccccCCCCCccccccccCCcc
Q 022972 84 KVLTPREAGYAVQLSSKTLLDVRPSTERKKAWIKG--------------SIWIPIFDIDDTFDAGSLPQKVTNFVMGGWW 149 (289)
Q Consensus 84 ~~Is~~el~~~l~~~~~vlIDVRs~~Ey~~ghIPG--------------AinIP~~~~~~~~~vgtlyk~~~~~~~~a~~ 149 (289)
..++++++..+.+.+=..||+.|+..|=. +-|. -+++|+..-.
T Consensus 13 ~Q~~~~d~~~la~~GfktVInlRpd~E~~--~qp~~~~~~~~a~~~Gl~y~~iPv~~~~--------------------- 69 (110)
T PF04273_consen 13 GQPSPEDLAQLAAQGFKTVINLRPDGEEP--GQPSSAEEAAAAEALGLQYVHIPVDGGA--------------------- 69 (110)
T ss_dssp CS--HHHHHHHHHCT--EEEE-S-TTSTT--T-T-HHCHHHHHHHCT-EEEE----TTT---------------------
T ss_pred CCCCHHHHHHHHHCCCcEEEECCCCCCCC--CCCCHHHHHHHHHHcCCeEEEeecCCCC---------------------
Confidence 46889999887777667999999876532 1221 3677765311
Q ss_pred CCCCCCcccHHHHHHHHhcCCCCCcEEEEcCCCCchHHHHHHH
Q 022972 150 SGVPTLSYNKQFLSKVEEKLPKDTDLIVACQKGLRSLAACELL 192 (289)
Q Consensus 150 ~g~~~~~~~~~f~~~~~~~l~k~~~IVvyC~~G~RS~~aa~~L 192 (289)
........|.+.+. .. .+||++||++|.||..++.+-
T Consensus 70 ---~~~~~v~~f~~~l~-~~--~~Pvl~hC~sG~Ra~~l~~l~ 106 (110)
T PF04273_consen 70 ---ITEEDVEAFADALE-SL--PKPVLAHCRSGTRASALWALA 106 (110)
T ss_dssp -----HHHHHHHHHHHH-TT--TTSEEEE-SCSHHHHHHHHHH
T ss_pred ---CCHHHHHHHHHHHH-hC--CCCEEEECCCChhHHHHHHHH
Confidence 00111223333332 33 469999999999997776543
No 63
>TIGR01244 conserved hypothetical protein TIGR01244. No member of this family is characterized. The member from Xylella fastidiosa is a longer protein with an N-terminal region described by this model, followed by a metallo-beta-lactamase family domain and an additional C-terminal region. Members scoring above the trusted cutoff are limited to the proteobacteria.
Probab=96.47 E-value=0.012 Score=48.68 Aligned_cols=104 Identities=21% Similarity=0.213 Sum_probs=57.0
Q ss_pred ceeCHHHHHHhhcCCCcEEEEeCChhhhhhcc----------CCCc--EeeCCCCCcccccCCCCCccccccccCCccCC
Q 022972 84 KVLTPREAGYAVQLSSKTLLDVRPSTERKKAW----------IKGS--IWIPIFDIDDTFDAGSLPQKVTNFVMGGWWSG 151 (289)
Q Consensus 84 ~~Is~~el~~~l~~~~~vlIDVRs~~Ey~~gh----------IPGA--inIP~~~~~~~~~vgtlyk~~~~~~~~a~~~g 151 (289)
..++++++..+.+.+=..|||.|++.|-.... -+|- +++|+..-. +
T Consensus 13 ~qlt~~d~~~L~~~GiktVIdlR~~~E~~~~p~~~~~~~~a~~~gl~y~~iPv~~~~-------~--------------- 70 (135)
T TIGR01244 13 PQLTKADAAQAAQLGFKTVINNRPDREEESQPDFAQIKAAAEAAGVTYHHQPVTAGD-------I--------------- 70 (135)
T ss_pred CCCCHHHHHHHHHCCCcEEEECCCCCCCCCCCCHHHHHHHHHHCCCeEEEeecCCCC-------C---------------
Confidence 46788888776555556899999987754211 0222 556654210 0
Q ss_pred CCCCcccHHHHHHHHhcCCCCCcEEEEcCCCCchHHHHHHH-HHccCCCeeEccccHHHHHhCCCCcc
Q 022972 152 VPTLSYNKQFLSKVEEKLPKDTDLIVACQKGLRSLAACELL-YNAGYRNLFWVQGGLEAAEEEDLVRE 218 (289)
Q Consensus 152 ~~~~~~~~~f~~~~~~~l~k~~~IVvyC~~G~RS~~aa~~L-~~~G~~nV~~L~GG~~aw~~~gl~~~ 218 (289)
.-.....|.+.+ +. .++||++||++|.|+..++.++ ...|.+.--+ ++.-++.|+..+
T Consensus 71 --~~~~v~~f~~~~-~~--~~~pvL~HC~sG~Rt~~l~al~~~~~g~~~~~i----~~~~~~~G~~~~ 129 (135)
T TIGR01244 71 --TPDDVETFRAAI-GA--AEGPVLAYCRSGTRSSLLWGFRQAAEGVPVEEI----VRRAQAAGYDLS 129 (135)
T ss_pred --CHHHHHHHHHHH-Hh--CCCCEEEEcCCChHHHHHHHHHHHHcCCCHHHH----HHHHHHcCCCcc
Confidence 000112333322 22 3579999999999988776543 3346541112 233355666655
No 64
>KOG1093 consensus Predicted protein kinase (contains TBC and RHOD domains) [General function prediction only]
Probab=94.27 E-value=0.0066 Score=61.15 Aligned_cols=101 Identities=17% Similarity=0.297 Sum_probs=67.3
Q ss_pred CCcceeCHHHHHHhhcCCCcEEEEeCChhhhhhccCCCcEeeCCCCCcccccCCCCCccccccccCCccCCCCCCcccHH
Q 022972 81 GKVKVLTPREAGYAVQLSSKTLLDVRPSTERKKAWIKGSIWIPIFDIDDTFDAGSLPQKVTNFVMGGWWSGVPTLSYNKQ 160 (289)
Q Consensus 81 ~~~~~Is~~el~~~l~~~~~vlIDVRs~~Ey~~ghIPGAinIP~~~~~~~~~vgtlyk~~~~~~~~a~~~g~~~~~~~~~ 160 (289)
...++|+++++..+ ....++|.|...||..+|+++++|+|...-+.+.+ | . .
T Consensus 619 e~~prmsAedl~~~---~~l~v~d~r~~~ef~r~~~s~s~nip~~~~ea~l~----------------~-----~----~ 670 (725)
T KOG1093|consen 619 EHCPRISAEDLIWL---KMLYVLDTRQESEFQREHFSDSINIPFNNHEADLD----------------W-----L----R 670 (725)
T ss_pred hcCccccHHHHHHH---HHHHHHhHHHHHHHHHhhccccccCCccchHHHHH----------------H-----h----h
Confidence 55778888887764 45789999999999999999999999883322221 0 0 1
Q ss_pred HHHHHHhcCCCCCcEEEEcCCCCchHHHHHHHHHccCCCeeEccccHHHHH
Q 022972 161 FLSKVEEKLPKDTDLIVACQKGLRSLAACELLYNAGYRNLFWVQGGLEAAE 211 (289)
Q Consensus 161 f~~~~~~~l~k~~~IVvyC~~G~RS~~aa~~L~~~G~~nV~~L~GG~~aw~ 211 (289)
+.+.... ..++.++++..+...+.+....+..+-+.....+.+|+.+++
T Consensus 671 ~l~~~~~--~~~~~~v~~~~~~K~~~e~~~~~~~mk~p~~cil~~~~~~~~ 719 (725)
T KOG1093|consen 671 FLPGIVC--SEGKKCVVVGKNDKHAAERLTELYVMKVPRICILHDGFNNID 719 (725)
T ss_pred cchHhHH--hhCCeEEEeccchHHHHHHhhHHHHhcccHHHHHHHHHhhcC
Confidence 1111110 234456666555555666666666666877888899888554
No 65
>cd00127 DSPc Dual specificity phosphatases (DSP); Ser/Thr and Tyr protein phosphatases. Structurally similar to tyrosine-specific phosphatases but with a shallower active site cleft and a distinctive active site signature motif, HCxxGxxR. Characterized as VHR- or Cdc25-like.
Probab=93.42 E-value=0.25 Score=39.90 Aligned_cols=79 Identities=18% Similarity=0.390 Sum_probs=42.0
Q ss_pred CCcEEEEeCChhhhhhccCC--CcEeeCCCCCcccccCCCCCccccccccCCccCCCCCCcccHHHHHHHHhcCCCCCcE
Q 022972 98 SSKTLLDVRPSTERKKAWIK--GSIWIPIFDIDDTFDAGSLPQKVTNFVMGGWWSGVPTLSYNKQFLSKVEEKLPKDTDL 175 (289)
Q Consensus 98 ~~~vlIDVRs~~Ey~~ghIP--GAinIP~~~~~~~~~vgtlyk~~~~~~~~a~~~g~~~~~~~~~f~~~~~~~l~k~~~I 175 (289)
+=..+||++++.++...+.+ .-.++|+.+.... +.....+.+.+.+......+++|
T Consensus 27 gi~~VI~l~~~~~~~~~~~~~~~~~~~~~~D~~~~----------------------~~~~~~~~~~~~i~~~~~~~~~v 84 (139)
T cd00127 27 GITHVLNVAKEVPNENLFLSDFNYLYVPILDLPSQ----------------------DISKYFDEAVDFIDDAREKGGKV 84 (139)
T ss_pred CCCEEEEcccCCCCcccCCCCceEEEEEceeCCCC----------------------ChHHHHHHHHHHHHHHHhcCCcE
Confidence 34589999998875222222 2455666542210 00111222333333233456799
Q ss_pred EEEcCCCC-chHHH--HHHHHHccCC
Q 022972 176 IVACQKGL-RSLAA--CELLYNAGYR 198 (289)
Q Consensus 176 VvyC~~G~-RS~~a--a~~L~~~G~~ 198 (289)
+|+|..|. ||..+ ++.+...|++
T Consensus 85 lVHC~~G~~Rs~~~~~~~l~~~~~~~ 110 (139)
T cd00127 85 LVHCLAGVSRSATLVIAYLMKTLGLS 110 (139)
T ss_pred EEECCCCCchhHHHHHHHHHHHcCCC
Confidence 99998776 87754 3455555553
No 66
>KOG1717 consensus Dual specificity phosphatase [Defense mechanisms]
Probab=93.22 E-value=0.089 Score=48.74 Aligned_cols=152 Identities=16% Similarity=0.086 Sum_probs=81.7
Q ss_pred eeCHHHHHHhhcCCCcEEEEeCChhhhhhccCCCcEeeCCCCCcccc-cCCCCCccccccccCCccCCCCCCcccHHHHH
Q 022972 85 VLTPREAGYAVQLSSKTLLDVRPSTERKKAWIKGSIWIPIFDIDDTF-DAGSLPQKVTNFVMGGWWSGVPTLSYNKQFLS 163 (289)
Q Consensus 85 ~Is~~el~~~l~~~~~vlIDVRs~~Ey~~ghIPGAinIP~~~~~~~~-~vgtlyk~~~~~~~~a~~~g~~~~~~~~~f~~ 163 (289)
.++.+++.+.+..++.+++|.|+ +..||.+|+|+-+..+..|. .-|.+. ....-+....
T Consensus 5 ~~s~~wlnr~l~~~nllllDCRs----es~~i~~A~~valPalmlrrl~~g~l~--------------~ra~~p~~~d-- 64 (343)
T KOG1717|consen 5 SKSVAWLNRQLELGNLLLLDCRS----ESSHIESAINVALPALMLRRLTGGNLP--------------VRALFPRSCD-- 64 (343)
T ss_pred HHHHHHHHhhcccCceEEEecCC----ccchhhhhhhhcchHHHHHHHhCCCCc--------------ceeccCCccc--
Confidence 45778888888888999999999 67799999998876554322 111110 0000000000
Q ss_pred HHHhcCC----CCCcEEEEcCCCC--c--hH------HHHHHHHHccCCCeeEccccHHHHHhC-CCCccCCCCCccccc
Q 022972 164 KVEEKLP----KDTDLIVACQKGL--R--SL------AACELLYNAGYRNLFWVQGGLEAAEEE-DLVREGPQPLKFAGI 228 (289)
Q Consensus 164 ~~~~~l~----k~~~IVvyC~~G~--R--S~------~aa~~L~~~G~~nV~~L~GG~~aw~~~-gl~~~~~~~~~~~~~ 228 (289)
.... +..++|.|+.+.. . +. ..-..++..|+. ++.|.||+..++.+ ...-++.......|+
T Consensus 65 ---~~~~~~~c~~v~vilyD~~~~e~e~~~~~~s~Lg~ll~kl~~~g~~-a~yL~ggF~~fq~e~~~~ceT~~~~s~PGl 140 (343)
T KOG1717|consen 65 ---DKRFPARCGTVTVILYDESSAEWEEETGAESVLGLLLKKLKDEGCS-ARYLSGGFSKFQAEASEHCETNLDGSSPGL 140 (343)
T ss_pred ---cccccccCCcceeeecccccccccccchhhhHHHHHHHHHHhcCcc-hhhhhcccchhhhhhhhhcccccccCCCcc
Confidence 0111 2356888886511 1 11 122456677986 99999999998775 111111111122255
Q ss_pred cccccccchhhhhccc----chhcCCCCcchhHHHH
Q 022972 229 GGLSEFLGYTSQLCYP----FLHISYPSTSFSKMTY 260 (289)
Q Consensus 229 ~G~t~~~Gkt~~l~~l----~~~~g~~~~~~~~~~~ 260 (289)
+|.--.+--.+....+ ...+|-+|+.|+-.++
T Consensus 141 gsl~~~Sd~sd~es~~~r~~~ds~G~~ra~FPV~il 176 (343)
T KOG1717|consen 141 GSLRISSDCSDNESDLDRDPEDSDGPQRASFPVEIL 176 (343)
T ss_pred ccccccccCccchhhhhcccccccCCcccCcchhhc
Confidence 5543222222333333 2233644888886653
No 67
>PF13350 Y_phosphatase3: Tyrosine phosphatase family; PDB: 1YWF_A 2OZ5_B.
Probab=93.00 E-value=0.092 Score=44.56 Aligned_cols=118 Identities=26% Similarity=0.310 Sum_probs=46.2
Q ss_pred hhCCCcceeCHHHHHHhhcCCCcEEEEeCChhhhhhc---cCCCc--EeeCCCCCcccc--cCCCCCcc--ccccccCCc
Q 022972 78 IRDGKVKVLTPREAGYAVQLSSKTLLDVRPSTERKKA---WIKGS--IWIPIFDIDDTF--DAGSLPQK--VTNFVMGGW 148 (289)
Q Consensus 78 ~~~~~~~~Is~~el~~~l~~~~~vlIDVRs~~Ey~~g---hIPGA--inIP~~~~~~~~--~vgtlyk~--~~~~~~~a~ 148 (289)
-+.+....+|+++...+.+.+=..|||.|++.|.+.. .++|. +|+|+....... .+...+.+ .....+...
T Consensus 22 yRS~~l~~lt~~d~~~L~~lgI~tIiDLRs~~E~~~~p~~~~~g~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (164)
T PF13350_consen 22 YRSGNLSNLTEADLERLRELGIRTIIDLRSPTERERAPDPLIDGVQYVHIPIFGDDASSPDKLAELLQSSADAPRGMLEF 101 (164)
T ss_dssp EEES--TT--HHHHHHHHHTT--EEEE-S-HHHHHHHS----TT-EEEE--SS-S-TTH----------HHHHHHHHHHH
T ss_pred EecCCcCcCCHHHHHHHHhCCCCEEEECCCccccccCCCCCcCCceeeeecccccccccccccccccccccchhhHHHHH
Confidence 3445667788888877664444589999999998763 34455 455655433221 00000100 000000000
Q ss_pred cCCCCCCc-ccHHHHHHHHhc-CCCCCcEEEEcCCCC-chHH-HHHHHHHccCC
Q 022972 149 WSGVPTLS-YNKQFLSKVEEK-LPKDTDLIVACQKGL-RSLA-ACELLYNAGYR 198 (289)
Q Consensus 149 ~~g~~~~~-~~~~f~~~~~~~-l~k~~~IVvyC~~G~-RS~~-aa~~L~~~G~~ 198 (289)
+..+. ...+-+.++.+. .+...|++++|..|+ |... ++-.|..+|.+
T Consensus 102 ---Y~~~~~~~~~~~~~~~~~l~~~~~p~l~HC~aGKDRTG~~~alll~~lGV~ 152 (164)
T PF13350_consen 102 ---YREMLESYAEAYRKIFELLADAPGPVLFHCTAGKDRTGVVAALLLSLLGVP 152 (164)
T ss_dssp ---HHHGGGSTHHHHHHHHHHHH-TT--EEEE-SSSSSHHHHHHHHHHHHTT--
T ss_pred ---HHHHHHhhhHHHHHHHHHhccCCCcEEEECCCCCccHHHHHHHHHHHcCCC
Confidence 00011 112333333332 233369999998777 6554 44566678875
No 68
>PRK00142 putative rhodanese-related sulfurtransferase; Provisional
Probab=91.66 E-value=0.023 Score=53.84 Aligned_cols=41 Identities=12% Similarity=-0.014 Sum_probs=32.3
Q ss_pred eeCHHHHHHhhcCCCcEEEEeCChhhhhhccCCCcEeeCCCC
Q 022972 85 VLTPREAGYAVQLSSKTLLDVRPSTERKKAWIKGSIWIPIFD 126 (289)
Q Consensus 85 ~Is~~el~~~l~~~~~vlIDVRs~~Ey~~ghIPGAinIP~~~ 126 (289)
.=+|+++.+.+.. ....+|+|+...|+.+||||++|+|...
T Consensus 15 i~~~~~~~~~l~~-~~~~~d~rg~i~~a~egIngtis~~~~~ 55 (314)
T PRK00142 15 IEDPEAFRDEHLA-LCKSLGLKGRILVAEEGINGTVSGTIEQ 55 (314)
T ss_pred CCCHHHHHHHHHH-HHHHcCCeeEEEEcCCCceEEEEecHHH
Confidence 3456666665533 4578999999999999999999999743
No 69
>smart00195 DSPc Dual specificity phosphatase, catalytic domain.
Probab=88.67 E-value=1.6 Score=35.35 Aligned_cols=30 Identities=27% Similarity=0.389 Sum_probs=21.9
Q ss_pred CCCCCcEEEEcCCCC-chHH--HHHHHHHccCC
Q 022972 169 LPKDTDLIVACQKGL-RSLA--ACELLYNAGYR 198 (289)
Q Consensus 169 l~k~~~IVvyC~~G~-RS~~--aa~~L~~~G~~ 198 (289)
...+++|+|+|..|. ||.. +++.+...|++
T Consensus 75 ~~~~~~VlVHC~~G~~RS~~v~~~yl~~~~~~~ 107 (138)
T smart00195 75 EKKGGKVLVHCQAGVSRSATLIIAYLMKYRNLS 107 (138)
T ss_pred hcCCCeEEEECCCCCchHHHHHHHHHHHHhCCC
Confidence 456789999998776 8775 44566677774
No 70
>COG2603 Predicted ATPase [General function prediction only]
Probab=88.59 E-value=0.0053 Score=57.26 Aligned_cols=123 Identities=7% Similarity=-0.106 Sum_probs=71.6
Q ss_pred eeCHHHHHHhhcCCCcEEEE-eCChhhhhhccCCCcEeeCCCCCcccccCCCCCccccccccCCccCCCCCCcccHHHH-
Q 022972 85 VLTPREAGYAVQLSSKTLLD-VRPSTERKKAWIKGSIWIPIFDIDDTFDAGSLPQKVTNFVMGGWWSGVPTLSYNKQFL- 162 (289)
Q Consensus 85 ~Is~~el~~~l~~~~~vlID-VRs~~Ey~~ghIPGAinIP~~~~~~~~~vgtlyk~~~~~~~~a~~~g~~~~~~~~~f~- 162 (289)
.+...+....++.++.+++| .+++.++-....|+|||+|..-.......|.+++++....++-.-.... ..+..++.
T Consensus 128 t~~~~a~~~~i~~k~~il~g~Tgcgkt~lve~lp~aidlE~~a~h~gssFGrt~~~q~~qkafE~~l~i~-el~l~~r~~ 206 (334)
T COG2603 128 TFAIQATIKEIAQKDFILCGCTGCGKTELVEQLPNAIDLEGLANHRGSSFGRTLEPQPSQKAFENVLAIE-ELKLQARQV 206 (334)
T ss_pred HHHHHHHHHHhccCCEEEeCCCCCcHHHHHHhCCCccCcHhHHHHHHHHHHHhcCcCccHHHHHHHHHHH-HHHHHHHHH
Confidence 33444454556677889999 9999999999999999999887776667777777665432221111110 11111111
Q ss_pred HHHHhcCCCCCcEEEEc-CCCCchHHHHHHHHHccCCCeeEccccHHHH
Q 022972 163 SKVEEKLPKDTDLIVAC-QKGLRSLAACELLYNAGYRNLFWVQGGLEAA 210 (289)
Q Consensus 163 ~~~~~~l~k~~~IVvyC-~~G~RS~~aa~~L~~~G~~nV~~L~GG~~aw 210 (289)
-+. +...-++-++..| +++|++...+..+...+.+ |..+.++|..-
T Consensus 207 ~Ea-ekr~igkl~lp~clre~M~~~p~a~v~~~~e~r-v~RIi~ey~~k 253 (334)
T COG2603 207 LEA-EKRIIGKLILPLCLREGMQQAPIAVVEDPFEKR-VERIIEEYFKK 253 (334)
T ss_pred Hhh-hhccccchhhHHHHHhhHhhCCeEEEechhHHH-HHHHHHHHHHH
Confidence 100 1233445566666 5666666666555555553 55555555444
No 71
>PLN02727 NAD kinase
Probab=86.26 E-value=2.8 Score=45.14 Aligned_cols=28 Identities=18% Similarity=0.200 Sum_probs=22.1
Q ss_pred cceeCHHHHHHhhcCCCcEEEEeCChhh
Q 022972 83 VKVLTPREAGYAVQLSSKTLLDVRPSTE 110 (289)
Q Consensus 83 ~~~Is~~el~~~l~~~~~vlIDVRs~~E 110 (289)
...++++++..+.+.+=..||+.|+..|
T Consensus 266 sgQpspe~la~LA~~GfKTIINLRpd~E 293 (986)
T PLN02727 266 GGQVTEEGLKWLLEKGFKTIVDLRAEIV 293 (986)
T ss_pred eCCCCHHHHHHHHHCCCeEEEECCCCCc
Confidence 4578999998776665568999999777
No 72
>PF00782 DSPc: Dual specificity phosphatase, catalytic domain; InterPro: IPR000340 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry represents dual specificity protein-tyrosine phosphatases. Ser/Thr and Tyr dual specificity phosphatases are a group of enzymes with both Ser/Thr (3.1.3.16 from EC) and tyrosine specific protein phosphatase (3.1.3.48 from EC) activity able to remove both the serine/threonine or tyrosine-bound phosphate group from a wide range of phosphoproteins, including a number of enzymes which have been phosphorylated under the action of a kinase. Dual specificity protein phosphatases (DSPs) regulate mitogenic signal transduction and control the cell cycle. The crystal structure of a human DSP, vaccinia H1-related phosphatase (or VHR), has been determined at 2.1 angstrom resolution []. A shallow active site pocket in VHR allows for the hydrolysis of phosphorylated serine, threonine, or tyrosine protein residues, whereas the deeper active site of protein tyrosine phosphatases (PTPs) restricts substrate specificity to only phosphotyrosine. Positively charged crevices near the active site may explain the enzyme's preference for substrates with two phosphorylated residues. The VHR structure defines a conserved structural scaffold for both DSPs and PTPs. A "recognition region" connecting helix alpha1 to strand beta1, may determine differences in substrate specificity between VHR, the PTPs, and other DSPs. These proteins may also have inactive phosphatase domains, and dependent on the domain composition this loss of catalytic activity has different effects on protein function. Inactive single domain phosphatases can still specifically bind substrates, and protect again dephosphorylation, while the inactive domains of tandem phosphatases can be further subdivided into two classes. Those which bind phosphorylated tyrosine residues may recruit multi-phosphorylated substrates for the adjacent active domains and are more conserved, while the other class have accumulated several variable amino acid substitutions and have a complete loss of tyrosine binding capability. The second class shows a release of evolutionary constraint for the sites around the catalytic centre, which emphasises a difference in function from the first group. There is a region of higher conservation common to both classes, suggesting a new regulatory centre [].; GO: 0008138 protein tyrosine/serine/threonine phosphatase activity, 0006470 protein dephosphorylation; PDB: 2G6Z_A 1MKP_A 1YZ4_A 2P4D_A 1M3G_A 1ZZW_A 2OUD_A 2HXP_A 3LJ8_A 1OHD_A ....
Probab=84.69 E-value=1.8 Score=34.70 Aligned_cols=30 Identities=33% Similarity=0.565 Sum_probs=20.7
Q ss_pred CCCCCcEEEEcCCCC-chHH--HHHHHHHccCC
Q 022972 169 LPKDTDLIVACQKGL-RSLA--ACELLYNAGYR 198 (289)
Q Consensus 169 l~k~~~IVvyC~~G~-RS~~--aa~~L~~~G~~ 198 (289)
..++.+|+|+|..|. ||.. +++++...|++
T Consensus 70 ~~~~~~VlVHC~~G~~RS~~v~~ayLm~~~~~~ 102 (133)
T PF00782_consen 70 ISEGGKVLVHCKAGLSRSGAVAAAYLMKKNGMS 102 (133)
T ss_dssp HHTTSEEEEEESSSSSHHHHHHHHHHHHHHTSS
T ss_pred hcccceeEEEeCCCcccchHHHHHHHHHHcCCC
Confidence 456779999998776 7665 44456666764
No 73
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=83.15 E-value=0.33 Score=38.21 Aligned_cols=25 Identities=16% Similarity=0.125 Sum_probs=20.6
Q ss_pred ccccccccccchhhhhcccchhcCCC
Q 022972 226 AGIGGLSEFLGYTSQLCYPFLHISYP 251 (289)
Q Consensus 226 ~~~~G~t~~~Gkt~~l~~l~~~~g~~ 251 (289)
..+.|.+| +|||++.+.||++-|++
T Consensus 2 I~I~G~~g-sGKST~a~~La~~~~~~ 26 (121)
T PF13207_consen 2 IIISGPPG-SGKSTLAKELAERLGFP 26 (121)
T ss_dssp EEEEESTT-SSHHHHHHHHHHHHTCE
T ss_pred EEEECCCC-CCHHHHHHHHHHHHCCe
Confidence 46789994 99999999995555996
No 74
>COG3453 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=82.73 E-value=5.7 Score=32.72 Aligned_cols=82 Identities=20% Similarity=0.265 Sum_probs=47.3
Q ss_pred cceeCHHHHHHhhcCCCcEEEEeCChhhhh-------------hccCCCcEeeCCCCCcccccCCCCCccccccccCCcc
Q 022972 83 VKVLTPREAGYAVQLSSKTLLDVRPSTERK-------------KAWIKGSIWIPIFDIDDTFDAGSLPQKVTNFVMGGWW 149 (289)
Q Consensus 83 ~~~Is~~el~~~l~~~~~vlIDVRs~~Ey~-------------~ghIPGAinIP~~~~~~~~~vgtlyk~~~~~~~~a~~ 149 (289)
...++++++.+.-..+=..+|.-||..|=. ...++ ..+||..-
T Consensus 13 sgQi~~~D~~~iaa~GFksiI~nRPDgEe~~QP~~~~i~~aa~~aGl~-y~~iPV~~----------------------- 68 (130)
T COG3453 13 SGQISPADIASIAALGFKSIICNRPDGEEPGQPGFAAIAAAAEAAGLT-YTHIPVTG----------------------- 68 (130)
T ss_pred cCCCCHHHHHHHHHhccceecccCCCCCCCCCCChHHHHHHHHhcCCc-eEEeecCC-----------------------
Confidence 346788888876555556789999865432 11122 34455432
Q ss_pred CCCCCCcccHHHHHHHHhcC-CCCCcEEEEcCCCCchHHHHHHHH
Q 022972 150 SGVPTLSYNKQFLSKVEEKL-PKDTDLIVACQKGLRSLAACELLY 193 (289)
Q Consensus 150 ~g~~~~~~~~~f~~~~~~~l-~k~~~IVvyC~~G~RS~~aa~~L~ 193 (289)
....++-++.+.+.+ ..+.|++.||++|.||..++.+=.
T Consensus 69 -----~~iT~~dV~~f~~Al~eaegPVlayCrsGtRs~~ly~~~~ 108 (130)
T COG3453 69 -----GGITEADVEAFQRALDEAEGPVLAYCRSGTRSLNLYGLGE 108 (130)
T ss_pred -----CCCCHHHHHHHHHHHHHhCCCEEeeecCCchHHHHHHHHH
Confidence 111222222222233 246799999999999988776433
No 75
>COG1220 HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=80.64 E-value=0.86 Score=44.00 Aligned_cols=42 Identities=17% Similarity=-0.047 Sum_probs=26.8
Q ss_pred HHHhCCCCcc--CCCCCccccccccccccchhhhhcccchhcCCC
Q 022972 209 AAEEEDLVRE--GPQPLKFAGIGGLSEFLGYTSQLCYPFLHISYP 251 (289)
Q Consensus 209 aw~~~gl~~~--~~~~~~~~~~~G~t~~~Gkt~~l~~l~~~~g~~ 251 (289)
.||+..++-+ .....+-.-+-|.|| ||||+|.|+||+=.|.|
T Consensus 34 R~RR~qL~~~lr~EV~PKNILMIGpTG-VGKTEIARRLAkl~~aP 77 (444)
T COG1220 34 RWRRMQLEEELRDEVTPKNILMIGPTG-VGKTEIARRLAKLAGAP 77 (444)
T ss_pred HHHHHhcCHHHhhccCccceEEECCCC-CcHHHHHHHHHHHhCCC
Confidence 4555544432 122334556668884 99999999996555766
No 76
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=78.81 E-value=0.61 Score=36.57 Aligned_cols=20 Identities=25% Similarity=0.207 Sum_probs=16.9
Q ss_pred cccccccccchhhhhcccchhc
Q 022972 227 GIGGLSEFLGYTSQLCYPFLHI 248 (289)
Q Consensus 227 ~~~G~t~~~Gkt~~l~~l~~~~ 248 (289)
+++|.+| +|||++.++| +++
T Consensus 2 ~i~G~~G-sGKtTia~~L-~~~ 21 (129)
T PF13238_consen 2 GISGIPG-SGKTTIAKEL-AER 21 (129)
T ss_dssp EEEESTT-SSHHHHHHHH-HHH
T ss_pred EEECCCC-CCHHHHHHHH-HHH
Confidence 5789994 9999999999 554
No 77
>KOG3636 consensus Uncharacterized conserved protein, contains TBC and Rhodanese domains [General function prediction only]
Probab=76.61 E-value=6.6 Score=39.19 Aligned_cols=27 Identities=11% Similarity=0.262 Sum_probs=23.8
Q ss_pred CcEEEEeCChhhhhhccCCCcEeeCCC
Q 022972 99 SKTLLDVRPSTERKKAWIKGSIWIPIF 125 (289)
Q Consensus 99 ~~vlIDVRs~~Ey~~ghIPGAinIP~~ 125 (289)
+..+||.||.+.|..||...|.|+.-.
T Consensus 326 rFFiVDcRpaeqynaGHlstaFhlDc~ 352 (669)
T KOG3636|consen 326 RFFIVDCRPAEQYNAGHLSTAFHLDCV 352 (669)
T ss_pred EEEEEeccchhhcccccchhhhcccHH
Confidence 467899999999999999999988743
No 78
>PRK12361 hypothetical protein; Provisional
Probab=74.08 E-value=19 Score=36.48 Aligned_cols=20 Identities=25% Similarity=0.534 Sum_probs=14.5
Q ss_pred CCCCCcEEEEcCCCC-chHHH
Q 022972 169 LPKDTDLIVACQKGL-RSLAA 188 (289)
Q Consensus 169 l~k~~~IVvyC~~G~-RS~~a 188 (289)
...+++|+|+|..|. ||..+
T Consensus 172 ~~~~~~VlVHC~~G~sRSa~v 192 (547)
T PRK12361 172 VRANKSVVVHCALGRGRSVLV 192 (547)
T ss_pred HHCCCeEEEECCCCCCcHHHH
Confidence 345678999998666 77653
No 79
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=70.52 E-value=1.8 Score=34.86 Aligned_cols=25 Identities=16% Similarity=0.117 Sum_probs=21.1
Q ss_pred ccccccccccchhhhhcccchhcCCC
Q 022972 226 AGIGGLSEFLGYTSQLCYPFLHISYP 251 (289)
Q Consensus 226 ~~~~G~t~~~Gkt~~l~~l~~~~g~~ 251 (289)
..+.|.+ |+|||++.+.|+++.|+|
T Consensus 2 I~i~G~~-GsGKst~a~~la~~~~~~ 26 (147)
T cd02020 2 IAIDGPA-GSGKSTVAKLLAKKLGLP 26 (147)
T ss_pred EEEECCC-CCCHHHHHHHHHHHhCCc
Confidence 3577888 499999999997777997
No 80
>TIGR03167 tRNA_sel_U_synt tRNA 2-selenouridine synthase. The Escherichia coli YbbB protein was shown to encode a selenophosphate-dependent tRNA 2-selenouridine synthase, essential for modification of some tRNAs to replace a sulfur atom with selenium. This enzyme works with SelD, the selenium donor protein, which also acts in selenocysteine incorporation. Although the members of this protein family show a fairly deep split, sequences from both sides of the split are supported by co-occurence with, and often proximity to, the selD gene.
Probab=70.37 E-value=7.7 Score=36.77 Aligned_cols=36 Identities=11% Similarity=0.026 Sum_probs=31.0
Q ss_pred CcceeCHHHHHHhhcCCCcEEEEeCChhhhhh---ccCC
Q 022972 82 KVKVLTPREAGYAVQLSSKTLLDVRPSTERKK---AWIK 117 (289)
Q Consensus 82 ~~~~Is~~el~~~l~~~~~vlIDVRs~~Ey~~---ghIP 117 (289)
....++.+++.+.+...+..+||+|+..+|.. ||||
T Consensus 134 g~tg~gKt~Ll~~L~~~~~~VvDlr~~a~hrGs~fG~~~ 172 (311)
T TIGR03167 134 GMTGSGKTELLHALANAGAQVLDLEGLANHRGSSFGALG 172 (311)
T ss_pred CCCCcCHHHHHHHHhcCCCeEEECCchHHhcCcccCCCC
Confidence 35678889999888777889999999999988 8888
No 81
>TIGR02173 cyt_kin_arch cytidylate kinase, putative. Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.
Probab=69.88 E-value=1.9 Score=35.81 Aligned_cols=25 Identities=20% Similarity=-0.000 Sum_probs=21.5
Q ss_pred ccccccccccchhhhhcccchhcCCC
Q 022972 226 AGIGGLSEFLGYTSQLCYPFLHISYP 251 (289)
Q Consensus 226 ~~~~G~t~~~Gkt~~l~~l~~~~g~~ 251 (289)
.+++|.+ |+|||++.+.++++.|+|
T Consensus 3 I~i~G~~-GSGKstia~~la~~lg~~ 27 (171)
T TIGR02173 3 ITISGPP-GSGKTTVAKILAEKLSLK 27 (171)
T ss_pred EEEECCC-CCCHHHHHHHHHHHcCCc
Confidence 5788888 499999999996667997
No 82
>PF05706 CDKN3: Cyclin-dependent kinase inhibitor 3 (CDKN3); InterPro: IPR022778 This entry represents a domain found in cyclin-dependent kinase inhibitor 3 or kinase associated phosphatase proteins from several mammalian species. The cyclin-dependent kinase (Cdk)-associated protein phosphatase (KAP) is a human dual specificity protein phosphatase that dephosphorylates Cdk2 on threonine 160 in a cyclin-dependent manner [], []. This domain is also found in MAP kinase phosphatase and esterases. This entry contains both eukaryotic and bacterial proteins.; GO: 0004721 phosphoprotein phosphatase activity, 0004725 protein tyrosine phosphatase activity; PDB: 1FQ1_A 1FPZ_F.
Probab=69.63 E-value=4.3 Score=35.22 Aligned_cols=37 Identities=32% Similarity=0.566 Sum_probs=22.8
Q ss_pred HHHHHHHhcCCCCCcEEEEcCCCC-chHH-HHHHHHHcc
Q 022972 160 QFLSKVEEKLPKDTDLIVACQKGL-RSLA-ACELLYNAG 196 (289)
Q Consensus 160 ~f~~~~~~~l~k~~~IVvyC~~G~-RS~~-aa~~L~~~G 196 (289)
++..++.+.+..+++|+++|++|. |+.. ||-+|-++|
T Consensus 121 ~i~~eL~~~L~~g~~V~vHC~GGlGRtGlvAAcLLl~L~ 159 (168)
T PF05706_consen 121 QILEELAARLENGRKVLVHCRGGLGRTGLVAACLLLELG 159 (168)
T ss_dssp HHHHHHHHHHHTT--EEEE-SSSSSHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHcCCEEEEECCCCCCHHHHHHHHHHHHHc
Confidence 345555555677889999999887 7765 555666665
No 83
>PRK04182 cytidylate kinase; Provisional
Probab=69.56 E-value=2 Score=35.96 Aligned_cols=25 Identities=16% Similarity=-0.007 Sum_probs=21.6
Q ss_pred ccccccccccchhhhhcccchhcCCC
Q 022972 226 AGIGGLSEFLGYTSQLCYPFLHISYP 251 (289)
Q Consensus 226 ~~~~G~t~~~Gkt~~l~~l~~~~g~~ 251 (289)
.++.|.+ |+|||++.+.||++.|||
T Consensus 3 I~i~G~~-GsGKstia~~la~~lg~~ 27 (180)
T PRK04182 3 ITISGPP-GSGKTTVARLLAEKLGLK 27 (180)
T ss_pred EEEECCC-CCCHHHHHHHHHHHcCCc
Confidence 5678888 499999999997778997
No 84
>PRK00131 aroK shikimate kinase; Reviewed
Probab=68.10 E-value=2.5 Score=35.03 Aligned_cols=28 Identities=11% Similarity=-0.063 Sum_probs=23.4
Q ss_pred CccccccccccccchhhhhcccchhcCCC
Q 022972 223 LKFAGIGGLSEFLGYTSQLCYPFLHISYP 251 (289)
Q Consensus 223 ~~~~~~~G~t~~~Gkt~~l~~l~~~~g~~ 251 (289)
.....+.|.+| +|||++-+.||++.|++
T Consensus 4 ~~~i~l~G~~G-sGKstla~~La~~l~~~ 31 (175)
T PRK00131 4 GPNIVLIGFMG-AGKSTIGRLLAKRLGYD 31 (175)
T ss_pred CCeEEEEcCCC-CCHHHHHHHHHHHhCCC
Confidence 34678889884 99999999997777996
No 85
>PRK06217 hypothetical protein; Validated
Probab=66.42 E-value=2.5 Score=36.20 Aligned_cols=25 Identities=24% Similarity=0.074 Sum_probs=21.1
Q ss_pred ccccccccccchhhhhcccchhcCCC
Q 022972 226 AGIGGLSEFLGYTSQLCYPFLHISYP 251 (289)
Q Consensus 226 ~~~~G~t~~~Gkt~~l~~l~~~~g~~ 251 (289)
.++.|.+ |+|||++-++|+++.|+|
T Consensus 4 I~i~G~~-GsGKSTla~~L~~~l~~~ 28 (183)
T PRK06217 4 IHITGAS-GSGTTTLGAALAERLDIP 28 (183)
T ss_pred EEEECCC-CCCHHHHHHHHHHHcCCc
Confidence 5678888 499999999997777886
No 86
>PRK13946 shikimate kinase; Provisional
Probab=65.87 E-value=2.8 Score=36.04 Aligned_cols=28 Identities=14% Similarity=-0.013 Sum_probs=23.6
Q ss_pred CccccccccccccchhhhhcccchhcCCC
Q 022972 223 LKFAGIGGLSEFLGYTSQLCYPFLHISYP 251 (289)
Q Consensus 223 ~~~~~~~G~t~~~Gkt~~l~~l~~~~g~~ 251 (289)
.+..++.|.. |+|||++-+.||+..|+|
T Consensus 10 ~~~I~l~G~~-GsGKsti~~~LA~~Lg~~ 37 (184)
T PRK13946 10 KRTVVLVGLM-GAGKSTVGRRLATMLGLP 37 (184)
T ss_pred CCeEEEECCC-CCCHHHHHHHHHHHcCCC
Confidence 4567888888 499999999997777997
No 87
>COG2453 CDC14 Predicted protein-tyrosine phosphatase [Signal transduction mechanisms]
Probab=64.58 E-value=10 Score=32.67 Aligned_cols=39 Identities=31% Similarity=0.539 Sum_probs=24.1
Q ss_pred HHHHHHHhcCCCCCcEEEEcCCCC-chHHH--HHHHHHccCC
Q 022972 160 QFLSKVEEKLPKDTDLIVACQKGL-RSLAA--CELLYNAGYR 198 (289)
Q Consensus 160 ~f~~~~~~~l~k~~~IVvyC~~G~-RS~~a--a~~L~~~G~~ 198 (289)
+....+.....++++|+|.|.+|. ||..+ |+.|...|..
T Consensus 93 ~~v~~i~~~~~~g~kVvVHC~~GigRSgtviaA~lm~~~~~~ 134 (180)
T COG2453 93 KIVDFIEEALSKGKKVVVHCQGGIGRSGTVIAAYLMLYGGLS 134 (180)
T ss_pred HHHHHHHHHHhcCCeEEEEcCCCCchHHHHHHHHHHHHcCCC
Confidence 333334444567779999998777 76653 3455554543
No 88
>PTZ00242 protein tyrosine phosphatase; Provisional
Probab=63.90 E-value=37 Score=28.94 Aligned_cols=19 Identities=26% Similarity=0.440 Sum_probs=14.4
Q ss_pred CCCCcEEEEcCCCC-chHHH
Q 022972 170 PKDTDLIVACQKGL-RSLAA 188 (289)
Q Consensus 170 ~k~~~IVvyC~~G~-RS~~a 188 (289)
.++.+|+|+|..|. ||..+
T Consensus 96 ~~g~~V~VHC~aGigRSgt~ 115 (166)
T PTZ00242 96 TPPETIAVHCVAGLGRAPIL 115 (166)
T ss_pred cCCCeEEEECCCCCCHHHHH
Confidence 45789999997655 77764
No 89
>PRK14738 gmk guanylate kinase; Provisional
Probab=63.11 E-value=4 Score=35.86 Aligned_cols=30 Identities=20% Similarity=0.139 Sum_probs=23.8
Q ss_pred CCCCCccccccccccccchhhhhcccchhcCC
Q 022972 219 GPQPLKFAGIGGLSEFLGYTSQLCYPFLHISY 250 (289)
Q Consensus 219 ~~~~~~~~~~~G~t~~~Gkt~~l~~l~~~~g~ 250 (289)
.+..-.+.++.|.+| +|||++.+.| .+.++
T Consensus 9 ~~~~~~~ivi~GpsG-~GK~tl~~~L-~~~~~ 38 (206)
T PRK14738 9 KPAKPLLVVISGPSG-VGKDAVLARM-RERKL 38 (206)
T ss_pred CCCCCeEEEEECcCC-CCHHHHHHHH-HhcCC
Confidence 345667888999995 9999999999 55554
No 90
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=63.00 E-value=4.5 Score=35.19 Aligned_cols=36 Identities=19% Similarity=0.042 Sum_probs=27.6
Q ss_pred ccccccccccchhhhhcccchhcCCC--CcchhHHHHHH
Q 022972 226 AGIGGLSEFLGYTSQLCYPFLHISYP--STSFSKMTYVI 262 (289)
Q Consensus 226 ~~~~G~t~~~Gkt~~l~~l~~~~g~~--~~~~~~~~~~~ 262 (289)
..++|+.| +|||++-+.||+..||+ ++-.+.|=.+-
T Consensus 3 ItIsG~pG-sG~TTva~~lAe~~gl~~vsaG~iFR~~A~ 40 (179)
T COG1102 3 ITISGLPG-SGKTTVARELAEHLGLKLVSAGTIFREMAR 40 (179)
T ss_pred EEeccCCC-CChhHHHHHHHHHhCCceeeccHHHHHHHH
Confidence 46789984 99999999998888998 54455555443
No 91
>PF04343 DUF488: Protein of unknown function, DUF488; InterPro: IPR007438 This family includes several proteins of uncharacterised function.
Probab=62.99 E-value=2.7 Score=33.85 Aligned_cols=30 Identities=17% Similarity=0.025 Sum_probs=18.2
Q ss_pred HHHHHHhhcCCCc-EEEEeCC-hh----hhhhccCC
Q 022972 88 PREAGYAVQLSSK-TLLDVRP-ST----ERKKAWIK 117 (289)
Q Consensus 88 ~~el~~~l~~~~~-vlIDVRs-~~----Ey~~ghIP 117 (289)
.+++.+.+...++ ++||||. |. .|.+..++
T Consensus 2 ~e~f~~~l~~~~i~~lVDVR~~P~S~~~~~~k~~l~ 37 (122)
T PF04343_consen 2 IERFYDLLKKNGIRVLVDVRLWPRSRKPGFNKEDLA 37 (122)
T ss_pred HHHHHHHHHHCCCeEEEEECCCCCCCCCCCCHHHHH
Confidence 4566666655444 8999995 44 45554433
No 92
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=62.87 E-value=7.1 Score=33.53 Aligned_cols=50 Identities=24% Similarity=0.311 Sum_probs=34.8
Q ss_pred HHHHHHHHccCCCeeEcc----ccHHHHHhCCCCccCCCCCccccccccccccchhhhhcccc
Q 022972 187 AACELLYNAGYRNLFWVQ----GGLEAAEEEDLVREGPQPLKFAGIGGLSEFLGYTSQLCYPF 245 (289)
Q Consensus 187 ~aa~~L~~~G~~nV~~L~----GG~~aw~~~gl~~~~~~~~~~~~~~G~t~~~Gkt~~l~~l~ 245 (289)
.....++.+||+ |+.+. .|++.+++. ..+ +..++.|.|| +||+.+++.|.
T Consensus 3 ~~~~~y~~~gy~-v~~~S~~~~~g~~~l~~~------l~~-k~~vl~G~SG-vGKSSLiN~L~ 56 (161)
T PF03193_consen 3 ELLEQYEKLGYP-VFFISAKTGEGIEELKEL------LKG-KTSVLLGQSG-VGKSSLINALL 56 (161)
T ss_dssp HHHHHHHHTTSE-EEE-BTTTTTTHHHHHHH------HTT-SEEEEECSTT-SSHHHHHHHHH
T ss_pred HHHHHHHHcCCc-EEEEeCCCCcCHHHHHHH------hcC-CEEEEECCCC-CCHHHHHHHHH
Confidence 345678889996 76654 455555542 123 6778999995 99999999983
No 93
>PRK06547 hypothetical protein; Provisional
Probab=62.78 E-value=3.8 Score=35.26 Aligned_cols=30 Identities=17% Similarity=-0.042 Sum_probs=23.8
Q ss_pred CCCccccccccccccchhhhhcccchhcCCC
Q 022972 221 QPLKFAGIGGLSEFLGYTSQLCYPFLHISYP 251 (289)
Q Consensus 221 ~~~~~~~~~G~t~~~Gkt~~l~~l~~~~g~~ 251 (289)
.+....++.|.+ |+|||.+-+.|+++.|++
T Consensus 13 ~~~~~i~i~G~~-GsGKTt~a~~l~~~~~~~ 42 (172)
T PRK06547 13 GGMITVLIDGRS-GSGKTTLAGALAARTGFQ 42 (172)
T ss_pred CCCEEEEEECCC-CCCHHHHHHHHHHHhCCC
Confidence 345677888998 499999999996666765
No 94
>PRK07261 topology modulation protein; Provisional
Probab=62.05 E-value=3.3 Score=35.31 Aligned_cols=25 Identities=24% Similarity=0.105 Sum_probs=20.6
Q ss_pred ccccccccccchhhhhcccchhcCCC
Q 022972 226 AGIGGLSEFLGYTSQLCYPFLHISYP 251 (289)
Q Consensus 226 ~~~~G~t~~~Gkt~~l~~l~~~~g~~ 251 (289)
..+.|.+ |+|||++.++|++..|+|
T Consensus 3 i~i~G~~-GsGKSTla~~l~~~~~~~ 27 (171)
T PRK07261 3 IAIIGYS-GSGKSTLARKLSQHYNCP 27 (171)
T ss_pred EEEEcCC-CCCHHHHHHHHHHHhCCC
Confidence 4578888 499999999997666876
No 95
>COG0237 CoaE Dephospho-CoA kinase [Coenzyme metabolism]
Probab=61.49 E-value=4.1 Score=36.14 Aligned_cols=33 Identities=12% Similarity=0.079 Sum_probs=27.4
Q ss_pred ccccccccccccchhhhhcccchhcCCC--CcchhHH
Q 022972 224 KFAGIGGLSEFLGYTSQLCYPFLHISYP--STSFSKM 258 (289)
Q Consensus 224 ~~~~~~G~t~~~Gkt~~l~~l~~~~g~~--~~~~~~~ 258 (289)
...++||.- |+|||++.+.+ ++.||| .+--.+|
T Consensus 3 ~iIglTG~i-gsGKStva~~~-~~~G~~vidaD~v~r 37 (201)
T COG0237 3 LIIGLTGGI-GSGKSTVAKIL-AELGFPVIDADDVAR 37 (201)
T ss_pred eEEEEecCC-CCCHHHHHHHH-HHcCCeEEEccHHHH
Confidence 346888888 59999999999 778999 7777777
No 96
>PF03668 ATP_bind_2: P-loop ATPase protein family; InterPro: IPR005337 This entry represents UPF0042 nucleotide-binding proteins. This is a family of putative P-loop ATPases [], as they contain an ATP-binding site and display ATPase and GTPase activities.; GO: 0005524 ATP binding
Probab=61.12 E-value=3.6 Score=38.63 Aligned_cols=26 Identities=27% Similarity=0.291 Sum_probs=22.6
Q ss_pred ccccccccccccchhhhhcccchhcCCC
Q 022972 224 KFAGIGGLSEFLGYTSQLCYPFLHISYP 251 (289)
Q Consensus 224 ~~~~~~G~t~~~Gkt~~l~~l~~~~g~~ 251 (289)
++..++|+|| .|||..++.| +..||-
T Consensus 2 ~~vIiTGlSG-aGKs~Al~~l-ED~Gy~ 27 (284)
T PF03668_consen 2 ELVIITGLSG-AGKSTALRAL-EDLGYY 27 (284)
T ss_pred eEEEEeCCCc-CCHHHHHHHH-HhcCee
Confidence 4568999995 9999999999 888985
No 97
>PRK03839 putative kinase; Provisional
Probab=60.01 E-value=3.6 Score=34.92 Aligned_cols=25 Identities=20% Similarity=0.145 Sum_probs=20.9
Q ss_pred ccccccccccchhhhhcccchhcCCC
Q 022972 226 AGIGGLSEFLGYTSQLCYPFLHISYP 251 (289)
Q Consensus 226 ~~~~G~t~~~Gkt~~l~~l~~~~g~~ 251 (289)
..+.|.. |+|||++.+.||++-|||
T Consensus 3 I~l~G~p-GsGKsT~~~~La~~~~~~ 27 (180)
T PRK03839 3 IAITGTP-GVGKTTVSKLLAEKLGYE 27 (180)
T ss_pred EEEECCC-CCCHHHHHHHHHHHhCCc
Confidence 4567888 499999999997777997
No 98
>PRK04220 2-phosphoglycerate kinase; Provisional
Probab=59.42 E-value=7.6 Score=36.76 Aligned_cols=59 Identities=15% Similarity=0.061 Sum_probs=42.5
Q ss_pred hHHHHHHHHHccCCCeeEccccHHHHHhCCCCccCCCCCccccccccccccchhhhhcccchhcCCC
Q 022972 185 SLAACELLYNAGYRNLFWVQGGLEAAEEEDLVREGPQPLKFAGIGGLSEFLGYTSQLCYPFLHISYP 251 (289)
Q Consensus 185 S~~aa~~L~~~G~~nV~~L~GG~~aw~~~gl~~~~~~~~~~~~~~G~t~~~Gkt~~l~~l~~~~g~~ 251 (289)
...+...|.+.+++. +...|.-|+.-.... .| ....++|.+ |+|||.+.++||+..|++
T Consensus 61 ~~~V~~~L~~~~~~~---~~~~y~~~~~i~~~~---~p-~iIlI~G~s-gsGKStlA~~La~~l~~~ 119 (301)
T PRK04220 61 RRRVYYKLIEKDYEE---VAEKYLLWRRIRKSK---EP-IIILIGGAS-GVGTSTIAFELASRLGIR 119 (301)
T ss_pred HHHHHHHHHHhCcHh---HHHHHHHHHHHhcCC---CC-EEEEEECCC-CCCHHHHHHHHHHHhCCC
Confidence 456778899999873 344588887632211 23 346799999 499999999998777886
No 99
>PF03853 YjeF_N: YjeF-related protein N-terminus; InterPro: IPR004443 The YjeF N-terminal domains occur either as single proteins or fusions with other domains and are commonly associated with enzymes. In bacteria and archaea, YjeF N-terminal domains are often fused to a YjeF C-terminal domain with high structural homology to the members of a ribokinase-like superfamily (see PDOC00806 from PROSITEDOC)and/or belong to operons that encode enzymes of diverse functions: pyridoxal phosphate biosynthetic protein PdxJ; phosphopanteine-protein transferase; ATP/GTP hydrolase; and pyruvate-formate lyase 1-activating enzyme. In plants, the YjeF N-terminal domain is fused to a C-terminal putative pyridoxamine 5'-phosphate oxidase. In eukaryotes, proteins that consist of (Sm)-FDF-YjeF N-terminal domains may be involved in RNA processing [, ]. The YjeF N-terminal domains represent a novel version of the Rossmann fold, one of the most common protein folds in nature observed in numerous enzyme families, that has acquired a set of catalytic residues and structural features that distinguish them from the conventional dehydrogenases. The YjeF N-terminal domain is comprised of a three-layer alpha-beta-alpha sandwich with a central beta-sheet surrounded by helices. The conservation of the acidic residues in the predicted active site of the YjeF N-terminal domains is reminiscent of the presence of such residues in the active sites of diverse hydrolases [, ].; PDB: 3K5W_A 2O8N_A 2DG2_F 3RNO_A 1JZT_B 3D3K_A 3D3J_A 3RSG_A 3RT9_A 3RRF_A ....
Probab=59.34 E-value=17 Score=31.01 Aligned_cols=37 Identities=27% Similarity=0.520 Sum_probs=27.2
Q ss_pred HHhcC--CCCCcEEEEcCCCC---chHHHHHHHHHccCCCeeE
Q 022972 165 VEEKL--PKDTDLIVACQKGL---RSLAACELLYNAGYRNLFW 202 (289)
Q Consensus 165 ~~~~l--~k~~~IVvyC~~G~---RS~~aa~~L~~~G~~nV~~ 202 (289)
+.+.+ ++..+|++.|.+|. ....+++.|...|++ |.+
T Consensus 16 i~~~~~~~~~~~v~il~G~GnNGgDgl~~AR~L~~~G~~-V~v 57 (169)
T PF03853_consen 16 IRKLFGSPKGPRVLILCGPGNNGGDGLVAARHLANRGYN-VTV 57 (169)
T ss_dssp HHHHSTCCTT-EEEEEE-SSHHHHHHHHHHHHHHHTTCE-EEE
T ss_pred HHHHhcccCCCeEEEEECCCCChHHHHHHHHHHHHCCCe-EEE
Confidence 33445 67788999997555 688899999999996 765
No 100
>PRK13947 shikimate kinase; Provisional
Probab=59.04 E-value=4.1 Score=34.06 Aligned_cols=25 Identities=16% Similarity=-0.055 Sum_probs=21.7
Q ss_pred ccccccccccchhhhhcccchhcCCC
Q 022972 226 AGIGGLSEFLGYTSQLCYPFLHISYP 251 (289)
Q Consensus 226 ~~~~G~t~~~Gkt~~l~~l~~~~g~~ 251 (289)
..+.|.. |+|||++-+.||+..|+|
T Consensus 4 I~l~G~~-GsGKst~a~~La~~lg~~ 28 (171)
T PRK13947 4 IVLIGFM-GTGKTTVGKRVATTLSFG 28 (171)
T ss_pred EEEEcCC-CCCHHHHHHHHHHHhCCC
Confidence 5778888 499999999998888997
No 101
>PRK05416 glmZ(sRNA)-inactivating NTPase; Provisional
Probab=58.89 E-value=4.8 Score=37.74 Aligned_cols=28 Identities=25% Similarity=0.371 Sum_probs=24.2
Q ss_pred CCccccccccccccchhhhhcccchhcCCC
Q 022972 222 PLKFAGIGGLSEFLGYTSQLCYPFLHISYP 251 (289)
Q Consensus 222 ~~~~~~~~G~t~~~Gkt~~l~~l~~~~g~~ 251 (289)
+..+.+++|.+| .|||++++.| ++.||.
T Consensus 5 ~~~~i~i~G~~G-sGKtt~~~~l-~~~g~~ 32 (288)
T PRK05416 5 PMRLVIVTGLSG-AGKSVALRAL-EDLGYY 32 (288)
T ss_pred CceEEEEECCCC-CcHHHHHHHH-HHcCCe
Confidence 456789999995 9999999999 777887
No 102
>KOG1615 consensus Phosphoserine phosphatase [Amino acid transport and metabolism]
Probab=58.83 E-value=14 Score=33.09 Aligned_cols=62 Identities=13% Similarity=0.132 Sum_probs=42.6
Q ss_pred hHHHHHHHHHccCCCeeEccccHHHHHh-----CCCCccC-------------CCCCccccccccccccchhhhhcccch
Q 022972 185 SLAACELLYNAGYRNLFWVQGGLEAAEE-----EDLVREG-------------PQPLKFAGIGGLSEFLGYTSQLCYPFL 246 (289)
Q Consensus 185 S~~aa~~L~~~G~~nV~~L~GG~~aw~~-----~gl~~~~-------------~~~~~~~~~~G~t~~~Gkt~~l~~l~~ 246 (289)
....+..|+..|-+ ||.+.||+..... -|+|.+. ...++..+-+-.+| ||.++++.+ +
T Consensus 93 i~eLv~~L~~~~~~-v~liSGGF~~~i~~Va~~Lgi~~~n~yAN~l~fd~~Gk~~gfd~~~ptsdsg--gKa~~i~~l-r 168 (227)
T KOG1615|consen 93 IRELVSRLHARGTQ-VYLISGGFRQLIEPVAEQLGIPKSNIYANELLFDKDGKYLGFDTNEPTSDSG--GKAEVIALL-R 168 (227)
T ss_pred HHHHHHHHHHcCCe-EEEEcCChHHHHHHHHHHhCCcHhhhhhheeeeccCCcccccccCCccccCC--ccHHHHHHH-H
Confidence 56899999999985 9999999976644 2666532 11223333333444 999999999 4
Q ss_pred hcCCC
Q 022972 247 HISYP 251 (289)
Q Consensus 247 ~~g~~ 251 (289)
+ ||+
T Consensus 169 k-~~~ 172 (227)
T KOG1615|consen 169 K-NYN 172 (227)
T ss_pred h-CCC
Confidence 4 876
No 103
>PRK04040 adenylate kinase; Provisional
Probab=58.62 E-value=3.9 Score=35.65 Aligned_cols=35 Identities=17% Similarity=0.172 Sum_probs=25.1
Q ss_pred ccccccccccccchhhhhcccchhc--CCCCcchhHHHH
Q 022972 224 KFAGIGGLSEFLGYTSQLCYPFLHI--SYPSTSFSKMTY 260 (289)
Q Consensus 224 ~~~~~~G~t~~~Gkt~~l~~l~~~~--g~~~~~~~~~~~ 260 (289)
+..+++|..| +|||++.+.|+++. +++ .+.++-++
T Consensus 3 ~~i~v~G~pG-~GKtt~~~~l~~~l~~~~~-~~~~g~~~ 39 (188)
T PRK04040 3 KVVVVTGVPG-VGKTTVLNKALEKLKEDYK-IVNFGDVM 39 (188)
T ss_pred eEEEEEeCCC-CCHHHHHHHHHHHhccCCe-EEecchHH
Confidence 4678889984 99999999996665 774 33344433
No 104
>COG4822 CbiK Cobalamin biosynthesis protein CbiK, Co2+ chelatase [Coenzyme metabolism]
Probab=58.48 E-value=25 Score=32.01 Aligned_cols=43 Identities=21% Similarity=0.369 Sum_probs=30.6
Q ss_pred HHHHHHHhcCC---CCCcEEEEcCCCCchHHHH-----HHHHHccCCCeeE
Q 022972 160 QFLSKVEEKLP---KDTDLIVACQKGLRSLAAC-----ELLYNAGYRNLFW 202 (289)
Q Consensus 160 ~f~~~~~~~l~---k~~~IVvyC~~G~RS~~aa-----~~L~~~G~~nV~~ 202 (289)
.+++.+...+| ++..+|++|.|.+.+..++ ..|...||+||++
T Consensus 122 ~~v~aik~~~ppl~k~e~~vlmgHGt~h~s~~~YacLd~~~~~~~f~~v~v 172 (265)
T COG4822 122 ICVEAIKDQIPPLNKDEILVLMGHGTDHHSNAAYACLDHVLDEYGFDNVFV 172 (265)
T ss_pred HHHHHHHHhcCCcCcCeEEEEEecCCCccHHHHHHHHHHHHHhcCCCceEE
Confidence 56677776676 6677999998777544333 3577889998875
No 105
>COG0278 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=58.06 E-value=39 Score=27.00 Aligned_cols=73 Identities=12% Similarity=0.070 Sum_probs=45.4
Q ss_pred CCcEEEEcCCC------CchHHHHHHHHHcc---CCCeeEccccHHHHHhCCCCccC-CCCCccccccccccccchhhhh
Q 022972 172 DTDLIVACQKG------LRSLAACELLYNAG---YRNLFWVQGGLEAAEEEDLVREG-PQPLKFAGIGGLSEFLGYTSQL 241 (289)
Q Consensus 172 ~~~IVvyC~~G------~RS~~aa~~L~~~G---~~nV~~L~GG~~aw~~~gl~~~~-~~~~~~~~~~G~t~~~Gkt~~l 241 (289)
+.+|++|-.|- .-|..+...|..+| |..+-+|.. ...|+ +++.-. =+.+.-.-+.|- ++|-.||+
T Consensus 14 ~n~VvLFMKGtp~~P~CGFS~~~vqiL~~~g~v~~~~vnVL~d--~eiR~-~lk~~s~WPT~PQLyi~GE--fvGG~DIv 88 (105)
T COG0278 14 ENPVVLFMKGTPEFPQCGFSAQAVQILSACGVVDFAYVDVLQD--PEIRQ-GLKEYSNWPTFPQLYVNGE--FVGGCDIV 88 (105)
T ss_pred cCceEEEecCCCCCCCCCccHHHHHHHHHcCCcceeEEeeccC--HHHHh-ccHhhcCCCCCceeeECCE--EeccHHHH
Confidence 44788887432 24899999999999 544556654 44443 333221 112233345555 79999999
Q ss_pred cccchhcCC
Q 022972 242 CYPFLHISY 250 (289)
Q Consensus 242 ~~l~~~~g~ 250 (289)
+++ -+.|-
T Consensus 89 ~Em-~q~GE 96 (105)
T COG0278 89 REM-YQSGE 96 (105)
T ss_pred HHH-HHcch
Confidence 999 66664
No 106
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=57.41 E-value=3.8 Score=32.06 Aligned_cols=24 Identities=17% Similarity=0.058 Sum_probs=20.2
Q ss_pred cccccccccchhhhhcccchhcCCC
Q 022972 227 GIGGLSEFLGYTSQLCYPFLHISYP 251 (289)
Q Consensus 227 ~~~G~t~~~Gkt~~l~~l~~~~g~~ 251 (289)
.++|.. |+|||.+.+.+|+..|+|
T Consensus 2 ll~G~~-G~GKT~l~~~la~~l~~~ 25 (132)
T PF00004_consen 2 LLHGPP-GTGKTTLARALAQYLGFP 25 (132)
T ss_dssp EEESST-TSSHHHHHHHHHHHTTSE
T ss_pred EEECcC-CCCeeHHHHHHHhhcccc
Confidence 367888 499999999998888876
No 107
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=57.12 E-value=5.3 Score=30.52 Aligned_cols=26 Identities=19% Similarity=-0.054 Sum_probs=19.7
Q ss_pred cccccccccccchhhhhcccchhcCCC
Q 022972 225 FAGIGGLSEFLGYTSQLCYPFLHISYP 251 (289)
Q Consensus 225 ~~~~~G~t~~~Gkt~~l~~l~~~~g~~ 251 (289)
...+.|.+ |+|||.+++.++...+.+
T Consensus 4 ~~~l~G~~-G~GKTtl~~~l~~~~~~~ 29 (148)
T smart00382 4 VILIVGPP-GSGKTTLARALARELGPP 29 (148)
T ss_pred EEEEECCC-CCcHHHHHHHHHhccCCC
Confidence 44677888 599999999996666553
No 108
>cd02022 DPCK Dephospho-coenzyme A kinase (DPCK, EC 2.7.1.24) catalyzes the phosphorylation of dephosphocoenzyme A (dCoA) to yield CoA, which is the final step in CoA biosynthesis.
Probab=56.60 E-value=6 Score=33.81 Aligned_cols=31 Identities=13% Similarity=0.040 Sum_probs=23.4
Q ss_pred ccccccccccchhhhhcccchhcCCC--CcchhHH
Q 022972 226 AGIGGLSEFLGYTSQLCYPFLHISYP--STSFSKM 258 (289)
Q Consensus 226 ~~~~G~t~~~Gkt~~l~~l~~~~g~~--~~~~~~~ 258 (289)
.+++|.. |+|||++.+.+ ++.|++ .+--..|
T Consensus 2 i~itG~~-gsGKst~~~~l-~~~g~~~i~~D~~~~ 34 (179)
T cd02022 2 IGLTGGI-GSGKSTVAKLL-KELGIPVIDADKIAH 34 (179)
T ss_pred EEEECCC-CCCHHHHHHHH-HHCCCCEEecCHHHH
Confidence 4678888 59999999999 558997 4444444
No 109
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=56.19 E-value=4.8 Score=33.46 Aligned_cols=24 Identities=8% Similarity=-0.006 Sum_probs=19.6
Q ss_pred cccccccccchhhhhcccchhcCCC
Q 022972 227 GIGGLSEFLGYTSQLCYPFLHISYP 251 (289)
Q Consensus 227 ~~~G~t~~~Gkt~~l~~l~~~~g~~ 251 (289)
++.|.+| +|||++.+.|++..|++
T Consensus 2 ~l~G~~G-sGKSTla~~l~~~l~~~ 25 (163)
T TIGR01313 2 VLMGVAG-SGKSTIASALAHRLGAK 25 (163)
T ss_pred EEECCCC-CCHHHHHHHHHHhcCCe
Confidence 4678884 99999999997666765
No 110
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=55.89 E-value=4.9 Score=33.65 Aligned_cols=26 Identities=15% Similarity=-0.120 Sum_probs=21.4
Q ss_pred cccccccccccchhhhhcccchhcCCC
Q 022972 225 FAGIGGLSEFLGYTSQLCYPFLHISYP 251 (289)
Q Consensus 225 ~~~~~G~t~~~Gkt~~l~~l~~~~g~~ 251 (289)
...+.|.+ |+|||++-+.||+..|+|
T Consensus 4 ~i~~~G~~-GsGKst~~~~la~~lg~~ 29 (171)
T PRK03731 4 PLFLVGAR-GCGKTTVGMALAQALGYR 29 (171)
T ss_pred eEEEECCC-CCCHHHHHHHHHHHhCCC
Confidence 35667888 499999999997777997
No 111
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=55.62 E-value=5.5 Score=33.79 Aligned_cols=27 Identities=19% Similarity=0.070 Sum_probs=21.2
Q ss_pred ccccccccccccchhhhhcccchhcCCC
Q 022972 224 KFAGIGGLSEFLGYTSQLCYPFLHISYP 251 (289)
Q Consensus 224 ~~~~~~G~t~~~Gkt~~l~~l~~~~g~~ 251 (289)
+...++|.+| +|||++.|+|+++.+.+
T Consensus 3 ~~i~l~G~~g-sGKst~a~~l~~~~~~~ 29 (175)
T cd00227 3 RIIILNGGSS-AGKSSIARALQSVLAEP 29 (175)
T ss_pred CEEEEECCCC-CCHHHHHHHHHHhhCCC
Confidence 4678999995 99999999995554544
No 112
>PF13344 Hydrolase_6: Haloacid dehalogenase-like hydrolase; PDB: 2HO4_B 1YV9_A 1WVI_B 3EPR_A 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A ....
Probab=55.48 E-value=19 Score=28.07 Aligned_cols=41 Identities=12% Similarity=0.130 Sum_probs=29.7
Q ss_pred CcccHHHHHHHHhcCCCCCcEEEEcCCCCch-HHHHHHHHHccCC
Q 022972 155 LSYNKQFLSKVEEKLPKDTDLIVACQKGLRS-LAACELLYNAGYR 198 (289)
Q Consensus 155 ~~~~~~f~~~~~~~l~k~~~IVvyC~~G~RS-~~aa~~L~~~G~~ 198 (289)
.+--.++++.+. ..++++++..+++.++ ...+..|+.+|++
T Consensus 16 ipga~e~l~~L~---~~g~~~~~lTNns~~s~~~~~~~L~~~Gi~ 57 (101)
T PF13344_consen 16 IPGAVEALDALR---ERGKPVVFLTNNSSRSREEYAKKLKKLGIP 57 (101)
T ss_dssp -TTHHHHHHHHH---HTTSEEEEEES-SSS-HHHHHHHHHHTTTT
T ss_pred CcCHHHHHHHHH---HcCCCEEEEeCCCCCCHHHHHHHHHhcCcC
Confidence 334457777776 3467899999888776 7888999999996
No 113
>PRK08118 topology modulation protein; Reviewed
Probab=55.01 E-value=5.3 Score=34.00 Aligned_cols=25 Identities=12% Similarity=-0.100 Sum_probs=20.7
Q ss_pred ccccccccccchhhhhcccchhcCCC
Q 022972 226 AGIGGLSEFLGYTSQLCYPFLHISYP 251 (289)
Q Consensus 226 ~~~~G~t~~~Gkt~~l~~l~~~~g~~ 251 (289)
..+.|.. |+|||++.++|+++.|+|
T Consensus 4 I~I~G~~-GsGKSTlak~L~~~l~~~ 28 (167)
T PRK08118 4 IILIGSG-GSGKSTLARQLGEKLNIP 28 (167)
T ss_pred EEEECCC-CCCHHHHHHHHHHHhCCC
Confidence 4567777 599999999997777887
No 114
>TIGR00017 cmk cytidylate kinase. This family consists of cytidylate kinase, which catalyzes the phosphorylation of cytidine 5-monophosphate (dCMP) to cytidine 5 -diphosphate (dCDP) in the presence of ATP or GTP. UMP and dCMP can also act as acceptors.
Probab=54.46 E-value=9.6 Score=34.02 Aligned_cols=26 Identities=19% Similarity=0.126 Sum_probs=21.8
Q ss_pred cccccccccccchhhhhcccchhcCCC
Q 022972 225 FAGIGGLSEFLGYTSQLCYPFLHISYP 251 (289)
Q Consensus 225 ~~~~~G~t~~~Gkt~~l~~l~~~~g~~ 251 (289)
..++.|.+ |.|||++++.++++.|++
T Consensus 4 ~i~i~G~~-GsGKst~~~~la~~~~~~ 29 (217)
T TIGR00017 4 IIAIDGPS-GAGKSTVAKAVAEKLGYA 29 (217)
T ss_pred EEEEECCC-CCCHHHHHHHHHHHhCCc
Confidence 45788888 499999999997777875
No 115
>TIGR00197 yjeF_nterm yjeF N-terminal region. This model is built on yeast protein YNL200C and the N-terminal regions of E. coli yjeF and its orthologs in various species. The C-terminal region of yjeF and its orthologs shows similarity to hydroxyethylthiazole kinase (thiM) and other enzymes involved in thiamine biosynthesis. Yeast YKL151C and B. subtilis yxkO match the yjeF C-terminal domain but lack this region.
Probab=54.06 E-value=28 Score=30.73 Aligned_cols=40 Identities=20% Similarity=0.380 Sum_probs=28.8
Q ss_pred HHHHhcCCCCCcEEEEcC---CCCchHHHHHHHHHccCCCeeEc
Q 022972 163 SKVEEKLPKDTDLIVACQ---KGLRSLAACELLYNAGYRNLFWV 203 (289)
Q Consensus 163 ~~~~~~l~k~~~IVvyC~---~G~RS~~aa~~L~~~G~~nV~~L 203 (289)
+.+.+.+++.++|+|+|. +|.....+++.|...|++ |+.+
T Consensus 36 ~~i~~~~~~~~~v~vl~G~GNNGGDGlv~AR~L~~~~v~-V~~~ 78 (205)
T TIGR00197 36 QAVLQAFPLAGHVIIFCGPGNNGGDGFVVARHLKGFGVE-VFLL 78 (205)
T ss_pred HHHHHHcCCCCeEEEEECCCCCccHHHHHHHHHHhCCCE-EEEE
Confidence 333334566678999995 455788999999888875 7765
No 116
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=53.76 E-value=6.3 Score=33.19 Aligned_cols=27 Identities=19% Similarity=-0.054 Sum_probs=21.5
Q ss_pred ccccccccccccchhhhhcccchhcCCC
Q 022972 224 KFAGIGGLSEFLGYTSQLCYPFLHISYP 251 (289)
Q Consensus 224 ~~~~~~G~t~~~Gkt~~l~~l~~~~g~~ 251 (289)
+..++.|.. |+|||++.+.|+++-|++
T Consensus 4 ~ii~i~G~~-GsGKsTl~~~l~~~~g~~ 30 (188)
T TIGR01360 4 KIIFIVGGP-GSGKGTQCEKIVEKYGFT 30 (188)
T ss_pred cEEEEECCC-CCCHHHHHHHHHHHhCCc
Confidence 455677777 599999999997776885
No 117
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=53.42 E-value=5.5 Score=32.36 Aligned_cols=24 Identities=17% Similarity=0.007 Sum_probs=20.0
Q ss_pred cccccccccchhhhhcccchhcCCC
Q 022972 227 GIGGLSEFLGYTSQLCYPFLHISYP 251 (289)
Q Consensus 227 ~~~G~t~~~Gkt~~l~~l~~~~g~~ 251 (289)
.+.|.. |.|||++.+.|+++.|++
T Consensus 3 ~l~G~~-GsGKstla~~la~~l~~~ 26 (154)
T cd00464 3 VLIGMM-GAGKTTVGRLLAKALGLP 26 (154)
T ss_pred EEEcCC-CCCHHHHHHHHHHHhCCC
Confidence 467777 499999999997777996
No 118
>COG3911 Predicted ATPase [General function prediction only]
Probab=52.72 E-value=7.5 Score=33.55 Aligned_cols=35 Identities=14% Similarity=-0.030 Sum_probs=26.4
Q ss_pred CccccccccccccchhhhhcccchhcCCCCcchhHHH
Q 022972 223 LKFAGIGGLSEFLGYTSQLCYPFLHISYPSTSFSKMT 259 (289)
Q Consensus 223 ~~~~~~~G~t~~~Gkt~~l~~l~~~~g~~~~~~~~~~ 259 (289)
.+...++|.. |.|||.+|++| ++.||.-..-.+|=
T Consensus 9 ~~~fIltGgp-GaGKTtLL~aL-a~~Gfatvee~~r~ 43 (183)
T COG3911 9 HKRFILTGGP-GAGKTTLLAAL-ARAGFATVEEAGRD 43 (183)
T ss_pred ceEEEEeCCC-CCcHHHHHHHH-HHcCceeeccchhh
Confidence 3567788887 49999999999 88899644444543
No 119
>PRK13973 thymidylate kinase; Provisional
Probab=51.92 E-value=20 Score=31.54 Aligned_cols=27 Identities=19% Similarity=0.228 Sum_probs=21.4
Q ss_pred ccccccccccccchhhhhcccchhc---CCC
Q 022972 224 KFAGIGGLSEFLGYTSQLCYPFLHI---SYP 251 (289)
Q Consensus 224 ~~~~~~G~t~~~Gkt~~l~~l~~~~---g~~ 251 (289)
.+.++-|.. |+|||++.+.|++.. |++
T Consensus 4 ~~IviEG~d-GsGKtTq~~~l~~~l~~~g~~ 33 (213)
T PRK13973 4 RFITFEGGE-GAGKSTQIRLLAERLRAAGYD 33 (213)
T ss_pred eEEEEEcCC-CCCHHHHHHHHHHHHHHCCCe
Confidence 567788888 499999999985554 885
No 120
>COG2074 2-phosphoglycerate kinase [Carbohydrate transport and metabolism]
Probab=51.68 E-value=6.4 Score=36.68 Aligned_cols=58 Identities=14% Similarity=0.009 Sum_probs=41.0
Q ss_pred HHHHHHHccCCCeeEccccHHHHHhCCCCccCCCCCccccccccccccchhhhhcccchhcCCCCc
Q 022972 188 ACELLYNAGYRNLFWVQGGLEAAEEEDLVREGPQPLKFAGIGGLSEFLGYTSQLCYPFLHISYPST 253 (289)
Q Consensus 188 aa~~L~~~G~~nV~~L~GG~~aw~~~gl~~~~~~~~~~~~~~G~t~~~Gkt~~l~~l~~~~g~~~~ 253 (289)
+...|...|++.+ ..-|.-|+.-.- .......-+||.|| +|||.|..++|.+.|++++
T Consensus 61 ~~~~l~~k~~~e~---a~rY~lwR~ir~----~~~p~IILIGGasG-VGkStIA~ElA~rLgI~~v 118 (299)
T COG2074 61 VYQKLLEKGDPEV---AKRYLLWRRIRK----MKRPLIILIGGASG-VGKSTIAGELARRLGIRSV 118 (299)
T ss_pred HHHHHHHhcCHHH---HHHHHHHHHHhc----cCCCeEEEecCCCC-CChhHHHHHHHHHcCCcee
Confidence 6666777777744 334677876321 12345678999995 9999999999888999643
No 121
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=51.26 E-value=7.6 Score=39.46 Aligned_cols=29 Identities=17% Similarity=0.202 Sum_probs=24.9
Q ss_pred CCccccccccccccchhhhhcccchhcCCC
Q 022972 222 PLKFAGIGGLSEFLGYTSQLCYPFLHISYP 251 (289)
Q Consensus 222 ~~~~~~~~G~t~~~Gkt~~l~~l~~~~g~~ 251 (289)
+.+...++|.+| .|||..++.||++.|+.
T Consensus 44 ~~~iLlLtGP~G-~GKtttv~~La~elg~~ 72 (519)
T PF03215_consen 44 PKRILLLTGPSG-CGKTTTVKVLAKELGFE 72 (519)
T ss_pred CcceEEEECCCC-CCHHHHHHHHHHHhCCe
Confidence 345889999995 99999999998888884
No 122
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=51.18 E-value=8.5 Score=33.70 Aligned_cols=29 Identities=17% Similarity=0.191 Sum_probs=22.9
Q ss_pred cccccccccccchhhhhcccchhcCCCCcch
Q 022972 225 FAGIGGLSEFLGYTSQLCYPFLHISYPSTSF 255 (289)
Q Consensus 225 ~~~~~G~t~~~Gkt~~l~~l~~~~g~~~~~~ 255 (289)
.+.++|.- |+|||++-+.| ++.||+-.+.
T Consensus 2 ~I~ITGTP-GvGKTT~~~~L-~~lg~~~i~l 30 (180)
T COG1936 2 LIAITGTP-GVGKTTVCKLL-RELGYKVIEL 30 (180)
T ss_pred eEEEeCCC-CCchHHHHHHH-HHhCCceeeH
Confidence 35688998 59999999999 5889974433
No 123
>TIGR03815 CpaE_hom_Actino helicase/secretion neighborhood CpaE-like protein. Members of this protein family belong to the MinD/ParA family of P-loop NTPases, and in particular show homology to the CpaE family of pilus assembly proteins (see PubMed:12370432). Nearly all members are found, not only in a gene context consistent with pilus biogenesis or a pilus-like secretion apparatus, but also near a DEAD/DEAH-box helicase, suggesting an involvement in DNA transfer activity. The model describes a clade restricted to the Actinobacteria.
Probab=50.94 E-value=51 Score=30.77 Aligned_cols=75 Identities=15% Similarity=0.040 Sum_probs=44.2
Q ss_pred cCCCCCcEEEEcCCCCchHHHHHHHHHccCCCeeEccccHHHHHhC---CCCccCCCCCccccccccccccchhhhhccc
Q 022972 168 KLPKDTDLIVACQKGLRSLAACELLYNAGYRNLFWVQGGLEAAEEE---DLVREGPQPLKFAGIGGLSEFLGYTSQLCYP 244 (289)
Q Consensus 168 ~l~k~~~IVvyC~~G~RS~~aa~~L~~~G~~nV~~L~GG~~aw~~~---gl~~~~~~~~~~~~~~G~t~~~Gkt~~l~~l 244 (289)
.+|+...+++.+.... ....+..+.+.|.+.+..+.-. ..|..+ .........-+...+.|.-||+|||.+--.|
T Consensus 37 ~~p~~~~vv~v~~~~~-~~~~~~~a~~~Ga~~~l~~P~~-~~~l~~~l~~~~~~~~~~~~vIav~~~KGGvGkTT~a~nL 114 (322)
T TIGR03815 37 GLPRRRRVVLVGGGEP-GGALWRAAAAVGAEHVAVLPEA-EGWLVELLADLDQSPPARGVVVAVIGGRGGAGASTLAAAL 114 (322)
T ss_pred cCCCCCCEEEEeCCCC-CHHHHHHHHHhChhheeeCCCC-HHHHHHHHHhhccCCCCCceEEEEEcCCCCCcHHHHHHHH
Confidence 3666667888886543 4556777778899866655444 333221 1111112234555566666789999986554
No 124
>PF09992 DUF2233: Predicted periplasmic protein (DUF2233); InterPro: IPR018711 This entry contains proteins that catalyze the second step in the formation of the mannose 6-phosphate targeting signal on lysosomal enzyme oligosaccharides, this is achieved by removing GlcNAc residues from GlcNAc-alpha-P-mannose moieties, which are formed in the first step.; PDB: 3OHG_A.
Probab=50.90 E-value=15 Score=30.93 Aligned_cols=43 Identities=19% Similarity=0.281 Sum_probs=25.4
Q ss_pred CCCCCcEEEEc-CC----CCchHHHHHHHHHccCCCeeEccccHHHHH
Q 022972 169 LPKDTDLIVAC-QK----GLRSLAACELLYNAGYRNLFWVQGGLEAAE 211 (289)
Q Consensus 169 l~k~~~IVvyC-~~----G~RS~~aa~~L~~~G~~nV~~L~GG~~aw~ 211 (289)
++++.++++++ .+ |+.-..++.+|+.+|..+...|+||-.+-.
T Consensus 97 ~~~~g~l~l~~vdg~~~~g~tl~ela~~l~~lG~~~AinLDGGgSs~l 144 (170)
T PF09992_consen 97 VTADGKLLLIVVDGRQSAGMTLDELAQLLKSLGCVDAINLDGGGSSTL 144 (170)
T ss_dssp E-TTSEEEEEEE----S--B-HHHHHHHHHHHT-SEEEE---GGG--E
T ss_pred EeCCCcEEEEEEcCCcCCCCCHHHHHHHHHHcCcCeEEEecCCcceEE
Confidence 34555666666 53 677888999999999999999999977653
No 125
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=49.19 E-value=5 Score=35.49 Aligned_cols=26 Identities=12% Similarity=0.038 Sum_probs=20.5
Q ss_pred ccccccccccccchhhhhcccchhcCC
Q 022972 224 KFAGIGGLSEFLGYTSQLCYPFLHISY 250 (289)
Q Consensus 224 ~~~~~~G~t~~~Gkt~~l~~l~~~~g~ 250 (289)
.+.++.|.|| +||+++.+.|-++.+.
T Consensus 5 ~l~vlsgPSG-~GKsTl~k~L~~~~~l 30 (191)
T COG0194 5 LLIVLSGPSG-VGKSTLVKALLEDDKL 30 (191)
T ss_pred eEEEEECCCC-CCHHHHHHHHHhhcCe
Confidence 4678999995 9999999998454433
No 126
>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process
Probab=48.91 E-value=32 Score=26.49 Aligned_cols=48 Identities=21% Similarity=0.301 Sum_probs=34.7
Q ss_pred HHHHHHHhcCCCCCcEEEEcCCCCchHHHHHHHHHccCCCeeEccccHH
Q 022972 160 QFLSKVEEKLPKDTDLIVACQKGLRSLAACELLYNAGYRNLFWVQGGLE 208 (289)
Q Consensus 160 ~f~~~~~~~l~k~~~IVvyC~~G~RS~~aa~~L~~~G~~nV~~L~GG~~ 208 (289)
...+.+.+...++.+++|||..-.....++..|.+.+.. +..+.|+..
T Consensus 16 ~i~~~i~~~~~~~~~~lvf~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~ 63 (131)
T cd00079 16 ALLELLKEHLKKGGKVLIFCPSKKMLDELAELLRKPGIK-VAALHGDGS 63 (131)
T ss_pred HHHHHHHhcccCCCcEEEEeCcHHHHHHHHHHHHhcCCc-EEEEECCCC
Confidence 333334433335678999999877788899999887774 888888854
No 127
>COG0062 Uncharacterized conserved protein [Function unknown]
Probab=48.59 E-value=33 Score=30.59 Aligned_cols=41 Identities=24% Similarity=0.386 Sum_probs=29.2
Q ss_pred HHHHHhcCCC--CCcEEEEcCCCC---chHHHHHHHHHccCCCeeEc
Q 022972 162 LSKVEEKLPK--DTDLIVACQKGL---RSLAACELLYNAGYRNLFWV 203 (289)
Q Consensus 162 ~~~~~~~l~k--~~~IVvyC~~G~---RS~~aa~~L~~~G~~nV~~L 203 (289)
.+.+.+..+. ..+++|+|.+|+ ....+|+.|...|++ |.++
T Consensus 37 a~~i~~~~~~~~~~~v~vlcG~GnNGGDG~VaAR~L~~~G~~-V~v~ 82 (203)
T COG0062 37 ARAILREYPLGRARRVLVLCGPGNNGGDGLVAARHLKAAGYA-VTVL 82 (203)
T ss_pred HHHHHHHcCcccCCEEEEEECCCCccHHHHHHHHHHHhCCCc-eEEE
Confidence 3444445665 557999995444 688999999999986 6544
No 128
>PRK06762 hypothetical protein; Provisional
Probab=48.48 E-value=7.3 Score=32.45 Aligned_cols=26 Identities=19% Similarity=-0.024 Sum_probs=20.4
Q ss_pred ccccccccccccchhhhhcccchhcCC
Q 022972 224 KFAGIGGLSEFLGYTSQLCYPFLHISY 250 (289)
Q Consensus 224 ~~~~~~G~t~~~Gkt~~l~~l~~~~g~ 250 (289)
.+..++|.+| +|||++-+.|++..|.
T Consensus 3 ~li~i~G~~G-sGKST~A~~L~~~l~~ 28 (166)
T PRK06762 3 TLIIIRGNSG-SGKTTIAKQLQERLGR 28 (166)
T ss_pred eEEEEECCCC-CCHHHHHHHHHHHhCC
Confidence 4568899994 9999999999555443
No 129
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=48.18 E-value=7.3 Score=32.88 Aligned_cols=24 Identities=21% Similarity=0.209 Sum_probs=19.1
Q ss_pred cccccccccccchhhhhcccchhcC
Q 022972 225 FAGIGGLSEFLGYTSQLCYPFLHIS 249 (289)
Q Consensus 225 ~~~~~G~t~~~Gkt~~l~~l~~~~g 249 (289)
..++.|.+| +|||++.+.|+...+
T Consensus 3 ~~~i~G~sG-sGKttl~~~l~~~~~ 26 (179)
T TIGR02322 3 LIYVVGPSG-AGKDTLLDYARARLA 26 (179)
T ss_pred EEEEECCCC-CCHHHHHHHHHHHcC
Confidence 467899995 999999999855443
No 130
>cd01673 dNK Deoxyribonucleoside kinase (dNK) catalyzes the phosphorylation of deoxyribonucleosides to yield corresponding monophosphates (dNMPs). This family consists of various deoxynucleoside kinases including deoxyribo- cytidine (EC 2.7.1.74), guanosine (EC 2.7.1.113), adenosine (EC 2.7.1.76), and thymidine (EC 2.7.1.21) kinases. They are key enzymes in the salvage of deoxyribonucleosides originating from extra- or intracellular breakdown of DNA.
Probab=48.10 E-value=7.8 Score=33.13 Aligned_cols=25 Identities=16% Similarity=0.028 Sum_probs=19.6
Q ss_pred ccccccccccchhhhhcccchhcCCC
Q 022972 226 AGIGGLSEFLGYTSQLCYPFLHISYP 251 (289)
Q Consensus 226 ~~~~G~t~~~Gkt~~l~~l~~~~g~~ 251 (289)
.++.|.. |+|||++++.|++..|++
T Consensus 2 I~ieG~~-GsGKSTl~~~L~~~~~~~ 26 (193)
T cd01673 2 IVVEGNI-GAGKSTLAKELAEHLGYE 26 (193)
T ss_pred EEEECCC-CCCHHHHHHHHHHHhCCc
Confidence 4677888 499999999995556775
No 131
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=48.03 E-value=14 Score=35.31 Aligned_cols=42 Identities=10% Similarity=0.072 Sum_probs=32.2
Q ss_pred CCcceeCHHHHHHhhc------CCCcEEEEeCChhhhhhccCCC-cEeeC
Q 022972 81 GKVKVLTPREAGYAVQ------LSSKTLLDVRPSTERKKAWIKG-SIWIP 123 (289)
Q Consensus 81 ~~~~~Is~~el~~~l~------~~~~vlIDVRs~~Ey~~ghIPG-AinIP 123 (289)
+....++++++.+.++ ..+..+||||++. |+..++|+ ...|-
T Consensus 274 ~~~~~i~~~~~~~~l~~~~~~~~~~~~ll~vr~~~-~~~~~~~~gr~~i~ 322 (339)
T PRK07688 274 PHKEEYDLEELAELLRDRGLDVNVNPYLLSFSLEE-KRLVLFKDGRVLVH 322 (339)
T ss_pred CCcCccCHHHHHHHHHhcccccCCCcEEEEEecCC-eEEEEEcCCCEEEE
Confidence 4556899999998873 2478999999988 99999884 44443
No 132
>PF01121 CoaE: Dephospho-CoA kinase; InterPro: IPR001977 This family contains dephospho-CoA kinases (2.7.1.24 from EC), which catalyzes the final step in CoA biosynthesis, the phosphorylation of the 3'-hydroxyl group of ribose using ATP as a phosphate donor. The crystal structures of a number of the proteins in this entry have been determined, including the structure of the protein from Haemophilus influenzae to 2.0-A resolution in a comlex with ATP. The protein consists of three domains: the nucleotide-binding domain with a five-stranded parallel beta-sheet, the substrate-binding alpha-helical domain, and the lid domain formed by a pair of alpha-helices; the overall topology of the protein resembles the structures of other nucleotide kinases [].; GO: 0004140 dephospho-CoA kinase activity, 0005524 ATP binding, 0015937 coenzyme A biosynthetic process; PDB: 1VHL_A 1N3B_A 1VIY_A 1VHT_B 1T3H_B 1UF9_C 2F6R_A 2GRJ_D 2IF2_C 1JJV_A.
Probab=47.79 E-value=6 Score=34.36 Aligned_cols=24 Identities=17% Similarity=0.194 Sum_probs=19.5
Q ss_pred ccccccccccchhhhhcccchhcCCC
Q 022972 226 AGIGGLSEFLGYTSQLCYPFLHISYP 251 (289)
Q Consensus 226 ~~~~G~t~~~Gkt~~l~~l~~~~g~~ 251 (289)
.|++|.- |+|||.+.+.+ ++.|+|
T Consensus 3 IglTG~i-gsGKStv~~~l-~~~G~~ 26 (180)
T PF01121_consen 3 IGLTGGI-GSGKSTVSKIL-AELGFP 26 (180)
T ss_dssp EEEEEST-TSSHHHHHHHH-HHTT-E
T ss_pred EEEECCC-cCCHHHHHHHH-HHCCCC
Confidence 4677777 59999999999 779996
No 133
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=47.13 E-value=9.5 Score=33.59 Aligned_cols=27 Identities=30% Similarity=0.294 Sum_probs=22.6
Q ss_pred ccccccccccccchhhhhcccchhcCCC
Q 022972 224 KFAGIGGLSEFLGYTSQLCYPFLHISYP 251 (289)
Q Consensus 224 ~~~~~~G~t~~~Gkt~~l~~l~~~~g~~ 251 (289)
....++|.+| +|||.+.+.|+.+.|++
T Consensus 4 ~~i~i~G~~G-~GKst~a~~l~~~~~~~ 30 (197)
T PRK12339 4 TIHFIGGIPG-VGKTSISGYIARHRAID 30 (197)
T ss_pred eEEEEECCCC-CCHHHHHHHHHHhcCCe
Confidence 3567899994 99999999997777884
No 134
>PRK08356 hypothetical protein; Provisional
Probab=46.97 E-value=7.5 Score=33.64 Aligned_cols=30 Identities=17% Similarity=0.124 Sum_probs=23.6
Q ss_pred ccccccccccccchhhhhcccchhcCCCCcch
Q 022972 224 KFAGIGGLSEFLGYTSQLCYPFLHISYPSTSF 255 (289)
Q Consensus 224 ~~~~~~G~t~~~Gkt~~l~~l~~~~g~~~~~~ 255 (289)
...+++|..| +|||++.+.| ++.|++.++.
T Consensus 6 ~~i~~~G~~g-sGK~t~a~~l-~~~g~~~is~ 35 (195)
T PRK08356 6 MIVGVVGKIA-AGKTTVAKFF-EEKGFCRVSC 35 (195)
T ss_pred EEEEEECCCC-CCHHHHHHHH-HHCCCcEEeC
Confidence 4568899984 9999999999 6788874333
No 135
>PRK13948 shikimate kinase; Provisional
Probab=46.36 E-value=11 Score=32.82 Aligned_cols=30 Identities=10% Similarity=0.082 Sum_probs=24.8
Q ss_pred CCCccccccccccccchhhhhcccchhcCCC
Q 022972 221 QPLKFAGIGGLSEFLGYTSQLCYPFLHISYP 251 (289)
Q Consensus 221 ~~~~~~~~~G~t~~~Gkt~~l~~l~~~~g~~ 251 (289)
.+.....+.|.. |+|||.+-+.||+..|++
T Consensus 8 ~~~~~I~LiG~~-GsGKSTvg~~La~~lg~~ 37 (182)
T PRK13948 8 RPVTWVALAGFM-GTGKSRIGWELSRALMLH 37 (182)
T ss_pred CCCCEEEEECCC-CCCHHHHHHHHHHHcCCC
Confidence 355677888888 499999999997778997
No 136
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=46.33 E-value=11 Score=40.05 Aligned_cols=32 Identities=22% Similarity=0.168 Sum_probs=27.8
Q ss_pred CCCCCccccccccccccchhhhhcccchhcCCC
Q 022972 219 GPQPLKFAGIGGLSEFLGYTSQLCYPFLHISYP 251 (289)
Q Consensus 219 ~~~~~~~~~~~G~t~~~Gkt~~l~~l~~~~g~~ 251 (289)
..++.+..-++|.-| +|||++.|..|+..||.
T Consensus 322 ~RP~kKilLL~GppG-lGKTTLAHViAkqaGYs 353 (877)
T KOG1969|consen 322 KRPPKKILLLCGPPG-LGKTTLAHVIAKQAGYS 353 (877)
T ss_pred CCCccceEEeecCCC-CChhHHHHHHHHhcCce
Confidence 356788889999995 99999999998888993
No 137
>PRK13976 thymidylate kinase; Provisional
Probab=46.29 E-value=40 Score=29.83 Aligned_cols=53 Identities=15% Similarity=-0.002 Sum_probs=33.3
Q ss_pred cccccccccccchhhhhcccchhc----C--------CCCcchhHHHHHHHHH--------HHHHHhhhhHHHH
Q 022972 225 FAGIGGLSEFLGYTSQLCYPFLHI----S--------YPSTSFSKMTYVIIHA--------MDSLYVGNLRNWW 278 (289)
Q Consensus 225 ~~~~~G~t~~~Gkt~~l~~l~~~~----g--------~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~ 278 (289)
+.++-|.. |+|||++.+.|++.. | .|+-..++..+--+|. ..+++|-|.|..|
T Consensus 2 fIv~EGiD-GsGKsTq~~~L~~~L~~~~g~~~v~~~~eP~~~~~g~~ir~~l~~~~~~~~~~~~llf~a~R~~~ 74 (209)
T PRK13976 2 FITFEGID-GSGKTTQSRLLAEYLSDIYGENNVVLTREPGGTSFNELVRGLLLSLKNLDKISELLLFIAMRREH 74 (209)
T ss_pred EEEEECCC-CCCHHHHHHHHHHHHHHhcCCcceEEeeCCCCCHHHHHHHHHHcCCcCCCHHHHHHHHHHHHHHH
Confidence 55677888 499999999874332 4 2322234555555543 4577787887665
No 138
>PRK14731 coaE dephospho-CoA kinase; Provisional
Probab=46.10 E-value=10 Score=33.34 Aligned_cols=32 Identities=9% Similarity=0.057 Sum_probs=24.3
Q ss_pred cccccccccccchhhhhcccchhcCCC--CcchhHH
Q 022972 225 FAGIGGLSEFLGYTSQLCYPFLHISYP--STSFSKM 258 (289)
Q Consensus 225 ~~~~~G~t~~~Gkt~~l~~l~~~~g~~--~~~~~~~ 258 (289)
..+++|.. |+|||++.+.| .+.|++ .+--.+|
T Consensus 7 ~igitG~i-gsGKSt~~~~l-~~~g~~v~d~D~i~~ 40 (208)
T PRK14731 7 LVGVTGGI-GSGKSTVCRFL-AEMGCELFEADRVAK 40 (208)
T ss_pred EEEEECCC-CCCHHHHHHHH-HHCCCeEEeccHHHH
Confidence 45888888 49999999999 778886 4444444
No 139
>TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Lac family includes several sequenced lactose (b-galactoside) permeases of Gram-positive bacteria as well as those in E. coli. While the Lac family usually consists of two polypeptide components IIA and IICB, the Chb permease of E. coli consists of three IIA, IIB and IIC. This family is specific for the IIB subunit of the Lac PTS family.
Probab=45.95 E-value=24 Score=27.31 Aligned_cols=40 Identities=20% Similarity=0.329 Sum_probs=27.8
Q ss_pred CCcEEEEcCCCCchHHHHHH----HHHccCCCeeEccccHHHHHh
Q 022972 172 DTDLIVACQKGLRSLAACEL----LYNAGYRNLFWVQGGLEAAEE 212 (289)
Q Consensus 172 ~~~IVvyC~~G~RS~~aa~~----L~~~G~~nV~~L~GG~~aw~~ 212 (289)
.++|++.|.+|+.|..++.. +++.|++ +.+-..++.....
T Consensus 3 ~~~ILl~C~~G~sSS~l~~k~~~~~~~~gi~-~~v~a~~~~~~~~ 46 (95)
T TIGR00853 3 ETNILLLCAAGMSTSLLVNKMNKAAEEYGVP-VKIAAGSYGAAGE 46 (95)
T ss_pred ccEEEEECCCchhHHHHHHHHHHHHHHCCCc-EEEEEecHHHHHh
Confidence 35899999999977666654 4556885 6666666665543
No 140
>PRK14733 coaE dephospho-CoA kinase; Provisional
Probab=45.38 E-value=8.7 Score=34.14 Aligned_cols=26 Identities=15% Similarity=-0.010 Sum_probs=20.6
Q ss_pred cccccccccccchhhhhcccchhcCCC
Q 022972 225 FAGIGGLSEFLGYTSQLCYPFLHISYP 251 (289)
Q Consensus 225 ~~~~~G~t~~~Gkt~~l~~l~~~~g~~ 251 (289)
..|++|.. |+|||++.+.++++.|++
T Consensus 8 ~IglTG~i-GsGKStv~~~l~~~lg~~ 33 (204)
T PRK14733 8 PIGITGGI-ASGKSTATRILKEKLNLN 33 (204)
T ss_pred EEEEECCC-CCCHHHHHHHHHHHcCCe
Confidence 46777877 599999999994346997
No 141
>cd05565 PTS_IIB_lactose PTS_IIB_lactose: subunit IIB of enzyme II (EII) of the lactose-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS) found in Firmicutes as well as Actinobacteria. In this system, EII is a lactose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIC and IIB domains are expressed as a single protein from the lac operon. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include lactose, chitobiose/lichenan, ascorbate, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system.
Probab=45.23 E-value=23 Score=27.83 Aligned_cols=38 Identities=18% Similarity=0.190 Sum_probs=27.8
Q ss_pred cEEEEcCCCCchHHHHHH----HHHccCCCeeEccccHHHHHh
Q 022972 174 DLIVACQKGLRSLAACEL----LYNAGYRNLFWVQGGLEAAEE 212 (289)
Q Consensus 174 ~IVvyC~~G~RS~~aa~~----L~~~G~~nV~~L~GG~~aw~~ 212 (289)
+|++.|.+|+.|..++.. +++.|++ +.+-..+......
T Consensus 2 ~Ill~C~~GaSSs~la~km~~~a~~~gi~-~~i~a~~~~e~~~ 43 (99)
T cd05565 2 NVLVLCAGGGTSGLLANALNKGAKERGVP-LEAAAGAYGSHYD 43 (99)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCc-EEEEEeeHHHHHH
Confidence 488999999988877765 4556885 7777777766554
No 142
>PRK00625 shikimate kinase; Provisional
Probab=45.04 E-value=9.2 Score=32.93 Aligned_cols=25 Identities=28% Similarity=0.114 Sum_probs=20.7
Q ss_pred ccccccccccchhhhhcccchhcCCC
Q 022972 226 AGIGGLSEFLGYTSQLCYPFLHISYP 251 (289)
Q Consensus 226 ~~~~G~t~~~Gkt~~l~~l~~~~g~~ 251 (289)
..+.|.. |+|||++-+.||++.|+|
T Consensus 3 I~LiG~p-GsGKTT~~k~La~~l~~~ 27 (173)
T PRK00625 3 IFLCGLP-TVGKTSFGKALAKFLSLP 27 (173)
T ss_pred EEEECCC-CCCHHHHHHHHHHHhCCC
Confidence 4567877 489999999997777997
No 143
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=44.91 E-value=8.8 Score=31.93 Aligned_cols=23 Identities=26% Similarity=-0.049 Sum_probs=14.1
Q ss_pred CCCccccccccccccchhhhhccc
Q 022972 221 QPLKFAGIGGLSEFLGYTSQLCYP 244 (289)
Q Consensus 221 ~~~~~~~~~G~t~~~Gkt~~l~~l 244 (289)
...+...++|.+ |+|||.+++++
T Consensus 22 ~~~~~~ll~G~~-G~GKT~ll~~~ 44 (185)
T PF13191_consen 22 GSPRNLLLTGES-GSGKTSLLRAL 44 (185)
T ss_dssp -----EEE-B-T-TSSHHHHHHHH
T ss_pred CCCcEEEEECCC-CCCHHHHHHHH
Confidence 345777888998 49999999976
No 144
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=44.65 E-value=8.1 Score=30.93 Aligned_cols=25 Identities=8% Similarity=-0.182 Sum_probs=20.0
Q ss_pred ccccccccccchhhhhcccchhcCCC
Q 022972 226 AGIGGLSEFLGYTSQLCYPFLHISYP 251 (289)
Q Consensus 226 ~~~~G~t~~~Gkt~~l~~l~~~~g~~ 251 (289)
..+.|.. |+|||++.+.++++.|++
T Consensus 2 ii~~G~p-gsGKSt~a~~l~~~~~~~ 26 (143)
T PF13671_consen 2 IILCGPP-GSGKSTLAKRLAKRLGAV 26 (143)
T ss_dssp EEEEEST-TSSHHHHHHHHHHHSTEE
T ss_pred EEEECCC-CCCHHHHHHHHHHHCCCE
Confidence 3577888 499999999996677863
No 145
>PRK14737 gmk guanylate kinase; Provisional
Probab=44.49 E-value=9.6 Score=33.11 Aligned_cols=25 Identities=12% Similarity=0.004 Sum_probs=20.4
Q ss_pred CCccccccccccccchhhhhcccchh
Q 022972 222 PLKFAGIGGLSEFLGYTSQLCYPFLH 247 (289)
Q Consensus 222 ~~~~~~~~G~t~~~Gkt~~l~~l~~~ 247 (289)
+..+.++.|.+| +|||++.+.|.++
T Consensus 3 ~~~~ivl~GpsG-~GK~tl~~~l~~~ 27 (186)
T PRK14737 3 SPKLFIISSVAG-GGKSTIIQALLEE 27 (186)
T ss_pred CCeEEEEECCCC-CCHHHHHHHHHhc
Confidence 346789999995 9999999999443
No 146
>PLN03050 pyridoxine (pyridoxamine) 5'-phosphate oxidase; Provisional
Probab=44.14 E-value=44 Score=30.52 Aligned_cols=30 Identities=23% Similarity=0.422 Sum_probs=24.3
Q ss_pred CcEEEEcC---CCCchHHHHHHHHHccCCCeeEc
Q 022972 173 TDLIVACQ---KGLRSLAACELLYNAGYRNLFWV 203 (289)
Q Consensus 173 ~~IVvyC~---~G~RS~~aa~~L~~~G~~nV~~L 203 (289)
++|+|+|. +|.....+|+.|...||+ |.++
T Consensus 61 ~~V~VlcG~GNNGGDGlv~AR~L~~~G~~-V~v~ 93 (246)
T PLN03050 61 PRVLLVCGPGNNGGDGLVAARHLAHFGYE-VTVC 93 (246)
T ss_pred CeEEEEECCCCCchhHHHHHHHHHHCCCe-EEEE
Confidence 67999995 455788999999999995 7655
No 147
>PRK10565 putative carbohydrate kinase; Provisional
Probab=44.14 E-value=39 Score=34.21 Aligned_cols=39 Identities=18% Similarity=0.300 Sum_probs=27.9
Q ss_pred HHHhcCCCCCcEEEEcCC---CCchHHHHHHHHHccCCCeeEc
Q 022972 164 KVEEKLPKDTDLIVACQK---GLRSLAACELLYNAGYRNLFWV 203 (289)
Q Consensus 164 ~~~~~l~k~~~IVvyC~~---G~RS~~aa~~L~~~G~~nV~~L 203 (289)
.+.+.+++.++|+|+|.. |.....+++.|...||+ |.++
T Consensus 52 ~i~~~~~~~~~v~vl~G~GNNGGDG~v~AR~L~~~G~~-V~v~ 93 (508)
T PRK10565 52 VARSAYPDARHWLVLCGHGNNGGDGYVVARLAQAAGID-VTLL 93 (508)
T ss_pred HHHHhcCCCCeEEEEEcCCCchHHHHHHHHHHHHCCCc-eEEE
Confidence 333345555679999954 44688899999999995 6544
No 148
>PHA02655 hypothetical protein; Provisional
Probab=44.04 E-value=18 Score=27.04 Aligned_cols=14 Identities=64% Similarity=1.231 Sum_probs=10.0
Q ss_pred chhHHHHHHHHHHHH
Q 022972 3 SHYFLCSLFLLSLFV 17 (289)
Q Consensus 3 ~~~~~~~~~~~~~~~ 17 (289)
||||+ +.||+|+|+
T Consensus 26 shyfi-itflvslfi 39 (94)
T PHA02655 26 SHYFI-ITFLVSLFI 39 (94)
T ss_pred hhhhH-HHHHHHHHH
Confidence 89986 467777665
No 149
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=43.91 E-value=8.7 Score=31.50 Aligned_cols=21 Identities=19% Similarity=0.148 Sum_probs=17.2
Q ss_pred ccccccccccchhhhhcccchh
Q 022972 226 AGIGGLSEFLGYTSQLCYPFLH 247 (289)
Q Consensus 226 ~~~~G~t~~~Gkt~~l~~l~~~ 247 (289)
.++.|.|| +|||++.+.|++.
T Consensus 2 i~i~GpsG-sGKstl~~~L~~~ 22 (137)
T cd00071 2 IVLSGPSG-VGKSTLLKRLLEE 22 (137)
T ss_pred EEEECCCC-CCHHHHHHHHHhc
Confidence 46789994 9999999999554
No 150
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=43.66 E-value=9.5 Score=32.69 Aligned_cols=24 Identities=21% Similarity=-0.018 Sum_probs=19.0
Q ss_pred cccccccccccchhhhhcccchhcC
Q 022972 225 FAGIGGLSEFLGYTSQLCYPFLHIS 249 (289)
Q Consensus 225 ~~~~~G~t~~~Gkt~~l~~l~~~~g 249 (289)
..++.|.+| +|||+++|.|+...+
T Consensus 4 ~i~l~G~sG-sGKsTl~~~l~~~~~ 27 (186)
T PRK10078 4 LIWLMGPSG-SGKDSLLAALRQREQ 27 (186)
T ss_pred EEEEECCCC-CCHHHHHHHHhccCC
Confidence 567889994 999999999954444
No 151
>PRK00081 coaE dephospho-CoA kinase; Reviewed
Probab=43.64 E-value=9.6 Score=33.11 Aligned_cols=32 Identities=13% Similarity=0.048 Sum_probs=23.9
Q ss_pred cccccccccccchhhhhcccchhcCCC--CcchhHH
Q 022972 225 FAGIGGLSEFLGYTSQLCYPFLHISYP--STSFSKM 258 (289)
Q Consensus 225 ~~~~~G~t~~~Gkt~~l~~l~~~~g~~--~~~~~~~ 258 (289)
..+++|.. |+|||++.+.| ++.|++ .+--.+|
T Consensus 4 ~i~ltG~~-gsGKst~~~~l-~~~g~~~i~~D~~~~ 37 (194)
T PRK00081 4 IIGLTGGI-GSGKSTVANLF-AELGAPVIDADAIAH 37 (194)
T ss_pred EEEEECCC-CCCHHHHHHHH-HHcCCEEEEecHHHH
Confidence 46788888 59999999999 558986 3334444
No 152
>PRK05541 adenylylsulfate kinase; Provisional
Probab=43.61 E-value=11 Score=31.69 Aligned_cols=26 Identities=19% Similarity=0.046 Sum_probs=20.6
Q ss_pred CCccccccccccccchhhhhcccchhc
Q 022972 222 PLKFAGIGGLSEFLGYTSQLCYPFLHI 248 (289)
Q Consensus 222 ~~~~~~~~G~t~~~Gkt~~l~~l~~~~ 248 (289)
+-.+..+.|.+| +|||++.+.++++.
T Consensus 6 ~~~~I~i~G~~G-sGKst~a~~l~~~l 31 (176)
T PRK05541 6 NGYVIWITGLAG-SGKTTIAKALYERL 31 (176)
T ss_pred CCCEEEEEcCCC-CCHHHHHHHHHHHH
Confidence 345778999995 99999999985544
No 153
>PF13173 AAA_14: AAA domain
Probab=43.56 E-value=9.1 Score=30.69 Aligned_cols=25 Identities=20% Similarity=0.089 Sum_probs=19.4
Q ss_pred ccccccccccccchhhhhcccchhcC
Q 022972 224 KFAGIGGLSEFLGYTSQLCYPFLHIS 249 (289)
Q Consensus 224 ~~~~~~G~t~~~Gkt~~l~~l~~~~g 249 (289)
+...+.|.-+ +|||.++++++++.-
T Consensus 3 ~~~~l~G~R~-vGKTtll~~~~~~~~ 27 (128)
T PF13173_consen 3 KIIILTGPRG-VGKTTLLKQLAKDLL 27 (128)
T ss_pred CeEEEECCCC-CCHHHHHHHHHHHhc
Confidence 4567888884 999999999965543
No 154
>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=43.42 E-value=8.8 Score=39.32 Aligned_cols=44 Identities=9% Similarity=-0.028 Sum_probs=31.1
Q ss_pred HHHHHhCCCCccCCCCCccccccccccccchhhhhcccchhcCCC
Q 022972 207 LEAAEEEDLVREGPQPLKFAGIGGLSEFLGYTSQLCYPFLHISYP 251 (289)
Q Consensus 207 ~~aw~~~gl~~~~~~~~~~~~~~G~t~~~Gkt~~l~~l~~~~g~~ 251 (289)
.+.|.+.-.......+....-++|.+| .|||+.++.|+++.||.
T Consensus 94 Vk~WL~~~~~~~~~l~~~iLLltGPsG-cGKSTtvkvLskelg~~ 137 (634)
T KOG1970|consen 94 VKQWLKQVAEFTPKLGSRILLLTGPSG-CGKSTTVKVLSKELGYQ 137 (634)
T ss_pred HHHHHHHHHHhccCCCceEEEEeCCCC-CCchhHHHHHHHhhCce
Confidence 466665111122233566788999995 99999999998888995
No 155
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=43.39 E-value=9.6 Score=32.03 Aligned_cols=24 Identities=17% Similarity=0.057 Sum_probs=19.1
Q ss_pred ccccccccccccchhhhhcccchhc
Q 022972 224 KFAGIGGLSEFLGYTSQLCYPFLHI 248 (289)
Q Consensus 224 ~~~~~~G~t~~~Gkt~~l~~l~~~~ 248 (289)
++.++.|.+| +|||++++.|++..
T Consensus 2 ~ii~l~G~~G-sGKsTl~~~L~~~~ 25 (180)
T TIGR03263 2 LLIVISGPSG-VGKSTLVKALLEED 25 (180)
T ss_pred cEEEEECCCC-CCHHHHHHHHHccC
Confidence 3567889994 99999999995543
No 156
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=43.37 E-value=7.2 Score=31.38 Aligned_cols=24 Identities=17% Similarity=-0.061 Sum_probs=19.7
Q ss_pred cccccccccchhhhhcccchhcCCC
Q 022972 227 GIGGLSEFLGYTSQLCYPFLHISYP 251 (289)
Q Consensus 227 ~~~G~t~~~Gkt~~l~~l~~~~g~~ 251 (289)
.+.|.+ |+|||.+.+.+|+..+++
T Consensus 3 lL~G~~-G~GKt~l~~~la~~~~~~ 26 (139)
T PF07728_consen 3 LLVGPP-GTGKTTLARELAALLGRP 26 (139)
T ss_dssp EEEESS-SSSHHHHHHHHHHHHTCE
T ss_pred EEECCC-CCCHHHHHHHHHHHhhcc
Confidence 467888 499999999997777775
No 157
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=43.34 E-value=7.4 Score=32.40 Aligned_cols=34 Identities=18% Similarity=0.019 Sum_probs=20.5
Q ss_pred cccccccccchhhhhcccchhcCCCCcchhHHHHHH
Q 022972 227 GIGGLSEFLGYTSQLCYPFLHISYPSTSFSKMTYVI 262 (289)
Q Consensus 227 ~~~G~t~~~Gkt~~l~~l~~~~g~~~~~~~~~~~~~ 262 (289)
+++|.- ++|||++.+.|+ +.|++-+.=.+|.+.-
T Consensus 3 ~i~G~~-stGKTTL~~~L~-~~g~~~v~E~ar~~~~ 36 (163)
T PF13521_consen 3 VITGGP-STGKTTLIEALA-ARGYPVVPEYAREIIE 36 (163)
T ss_dssp EEE--T-TSHHHHHHHHHH-HHT-EEE--TTHHHHH
T ss_pred EEECCC-CCCHHHHHHHHH-HcCCeEEeecHHHHHH
Confidence 344544 489999999995 4499855666776543
No 158
>PF01451 LMWPc: Low molecular weight phosphotyrosine protein phosphatase; InterPro: IPR023485 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry represents the low molecular weight (LMW) protein-tyrosine phosphatases (or acid phosphatase), which act on tyrosine phosphorylated proteins, low-MW aryl phosphates and natural and synthetic acyl phosphates [, ]. The structure of a LMW PTPase has been solved by X-ray crystallography [] and is found to form a single structural domain. It belongs to the alpha/beta class, with 6 alpha-helices and 4 beta-strands forming a 3-layer alpha-beta-alpha sandwich architecture.; PDB: 3RH0_B 1JL3_B 2IPA_B 1Z2D_A 1Z2E_A 2CWD_D 2L18_A 2L17_A 2L19_A 1BVH_A ....
Probab=42.87 E-value=16 Score=29.65 Aligned_cols=36 Identities=22% Similarity=0.132 Sum_probs=28.7
Q ss_pred EEEEcC-CCCchHHHHHHHHHc----cCCCeeEccccHHHH
Q 022972 175 LIVACQ-KGLRSLAACELLYNA----GYRNLFWVQGGLEAA 210 (289)
Q Consensus 175 IVvyC~-~G~RS~~aa~~L~~~----G~~nV~~L~GG~~aw 210 (289)
|++.|. +-.||..|..+++.+ +-.++.+...|..+|
T Consensus 1 ILFvC~~N~cRS~mAEai~~~~~~~~~~~~~~v~SAG~~~~ 41 (138)
T PF01451_consen 1 ILFVCTGNICRSPMAEAILRHLLKQRLGDRFEVESAGTEAW 41 (138)
T ss_dssp EEEEESSSSSHHHHHHHHHHHHHHHTHTTTEEEEEEESSST
T ss_pred CEEEeCCCcchHHHHHHHHHHhccccccCCcEEEEEeeccc
Confidence 688996 455999999988888 566788888888766
No 159
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=42.58 E-value=9.6 Score=32.71 Aligned_cols=27 Identities=19% Similarity=-0.038 Sum_probs=20.5
Q ss_pred CCccccccccccccchhhhhcccchhcC
Q 022972 222 PLKFAGIGGLSEFLGYTSQLCYPFLHIS 249 (289)
Q Consensus 222 ~~~~~~~~G~t~~~Gkt~~l~~l~~~~g 249 (289)
|....-+.|.|| +|||++.+.||+..+
T Consensus 2 p~~~~ll~GpsG-vGKT~la~~la~~l~ 28 (171)
T PF07724_consen 2 PKSNFLLAGPSG-VGKTELAKALAELLF 28 (171)
T ss_dssp -SEEEEEESSTT-SSHHHHHHHHHHHHT
T ss_pred CEEEEEEECCCC-CCHHHHHHHHHHHhc
Confidence 344556789995 999999999966556
No 160
>PTZ00393 protein tyrosine phosphatase; Provisional
Probab=41.99 E-value=40 Score=30.97 Aligned_cols=39 Identities=26% Similarity=0.453 Sum_probs=24.0
Q ss_pred HHHHHHHhcCCCCCcEEEEcCCCC-chHH-HHHHHHHccCC
Q 022972 160 QFLSKVEEKLPKDTDLIVACQKGL-RSLA-ACELLYNAGYR 198 (289)
Q Consensus 160 ~f~~~~~~~l~k~~~IVvyC~~G~-RS~~-aa~~L~~~G~~ 198 (289)
+|++.+...+..+.+|+|+|..|. |+.. ++.+|...|++
T Consensus 158 ~~l~~i~~~l~~g~~VaVHC~AGlGRTGtl~AayLI~~Gms 198 (241)
T PTZ00393 158 NWLTIVNNVIKNNRAVAVHCVAGLGRAPVLASIVLIEFGMD 198 (241)
T ss_pred HHHHHHHHHHhcCCeEEEECCCCCCHHHHHHHHHHHHcCCC
Confidence 344444333456779999997555 7664 44556567764
No 161
>PRK14730 coaE dephospho-CoA kinase; Provisional
Probab=41.48 E-value=11 Score=32.92 Aligned_cols=32 Identities=16% Similarity=0.102 Sum_probs=23.5
Q ss_pred cccccccccccchhhhhcccchhc-CCC--CcchhHH
Q 022972 225 FAGIGGLSEFLGYTSQLCYPFLHI-SYP--STSFSKM 258 (289)
Q Consensus 225 ~~~~~G~t~~~Gkt~~l~~l~~~~-g~~--~~~~~~~ 258 (289)
..+++|.. |+|||++.+.+ ++. |+| .+--.+|
T Consensus 3 ~i~itG~~-gsGKst~~~~l-~~~~g~~~i~~D~~~~ 37 (195)
T PRK14730 3 RIGLTGGI-ASGKSTVGNYL-AQQKGIPILDADIYAR 37 (195)
T ss_pred EEEEECCC-CCCHHHHHHHH-HHhhCCeEeeCcHHHH
Confidence 45778887 59999999999 566 997 4444444
No 162
>PF00218 IGPS: Indole-3-glycerol phosphate synthase; InterPro: IPR013798 Indole-3-glycerol phosphate synthase (4.1.1.48 from EC) (IGPS) catalyses the fourth step in the biosynthesis of tryptophan, the ring closure of 1-(2-carboxy-phenylamino)-1-deoxyribulose into indol-3-glycerol-phosphate. In some bacteria, IGPS is a single chain enzyme. In others, such as Escherichia coli, it is the N-terminal domain of a bifunctional enzyme that also catalyses N-(5'-phosphoribosyl)anthranilate isomerase (5.3.1.24 from EC) (PRAI) activity (see IPR001240 from INTERPRO), the third step of tryptophan biosynthesis. In fungi, IGPS is the central domain of a trifunctional enzyme that contains a PRAI C-terminal domain and a glutamine amidotransferase (2.4.2 from EC) (GATase) N-terminal domain (see IPR000991 from INTERPRO). A structure of the IGPS domain of the bifunctional enzyme from the mesophilic bacterium E. coli (eIGPS) has been compared with the monomeric indole-3-glycerol phosphate synthase from the hyperthermophilic archaeon Sulfolobus solfataricus (sIGPS). Both are single-domain (beta/alpha)8 barrel proteins, with one (eIGPS) or two (sIGPS) additional helices inserted before the first beta strand []. ; GO: 0004425 indole-3-glycerol-phosphate synthase activity; PDB: 1VC4_A 1PII_A 1JCM_P 1I4N_B 1J5T_A 3TSM_B 4FB7_A 3QJA_A 1JUL_A 2C3Z_A ....
Probab=41.17 E-value=39 Score=31.15 Aligned_cols=92 Identities=21% Similarity=0.305 Sum_probs=56.3
Q ss_pred ceeCHHHHHHhhc----CCCcEEEEeCChhhhhhccCCCcEeeCCCCCcccccCCCCCccccccccCCccCCCCCCcccH
Q 022972 84 KVLTPREAGYAVQ----LSSKTLLDVRPSTERKKAWIKGSIWIPIFDIDDTFDAGSLPQKVTNFVMGGWWSGVPTLSYNK 159 (289)
Q Consensus 84 ~~Is~~el~~~l~----~~~~vlIDVRs~~Ey~~ghIPGAinIP~~~~~~~~~vgtlyk~~~~~~~~a~~~g~~~~~~~~ 159 (289)
..++.+++.++++ .+=-.+|.|+++.|.+..---|+.-|-+++ +.+..+..+.
T Consensus 140 ~~L~~~~l~~l~~~a~~lGle~lVEVh~~~El~~al~~~a~iiGINn-----------------------RdL~tf~vd~ 196 (254)
T PF00218_consen 140 AILSDDQLEELLELAHSLGLEALVEVHNEEELERALEAGADIIGINN-----------------------RDLKTFEVDL 196 (254)
T ss_dssp GGSGHHHHHHHHHHHHHTT-EEEEEESSHHHHHHHHHTT-SEEEEES-----------------------BCTTTCCBHT
T ss_pred HhCCHHHHHHHHHHHHHcCCCeEEEECCHHHHHHHHHcCCCEEEEeC-----------------------ccccCcccCh
Confidence 3455555555443 222489999999999875544554444332 1122233344
Q ss_pred HHHHHHHhcCCCCCcEEEEcCCCCchHHHHHHHHHccCCCe
Q 022972 160 QFLSKVEEKLPKDTDLIVACQKGLRSLAACELLYNAGYRNL 200 (289)
Q Consensus 160 ~f~~~~~~~l~k~~~IVvyC~~G~RS~~aa~~L~~~G~~nV 200 (289)
+-..++...+|++ +++...+|..+..-+..|...|++-+
T Consensus 197 ~~~~~l~~~ip~~--~~~iseSGI~~~~d~~~l~~~G~dav 235 (254)
T PF00218_consen 197 NRTEELAPLIPKD--VIVISESGIKTPEDARRLARAGADAV 235 (254)
T ss_dssp HHHHHHHCHSHTT--SEEEEESS-SSHHHHHHHCTTT-SEE
T ss_pred HHHHHHHhhCccc--eeEEeecCCCCHHHHHHHHHCCCCEE
Confidence 5555666667754 67778899999999999999999733
No 163
>PRK08233 hypothetical protein; Provisional
Probab=40.93 E-value=11 Score=31.46 Aligned_cols=25 Identities=20% Similarity=-0.003 Sum_probs=19.6
Q ss_pred ccccccccccccchhhhhcccchhcC
Q 022972 224 KFAGIGGLSEFLGYTSQLCYPFLHIS 249 (289)
Q Consensus 224 ~~~~~~G~t~~~Gkt~~l~~l~~~~g 249 (289)
...++.|.+ |+|||++.+.|++..+
T Consensus 4 ~iI~I~G~~-GsGKtTla~~L~~~l~ 28 (182)
T PRK08233 4 KIITIAAVS-GGGKTTLTERLTHKLK 28 (182)
T ss_pred eEEEEECCC-CCCHHHHHHHHHhhCC
Confidence 456788888 5999999999965544
No 164
>TIGR00152 dephospho-CoA kinase. This model produces scores in the range of 0-25 bits against adenylate, guanylate, uridine, and thymidylate kinases.
Probab=40.36 E-value=11 Score=32.17 Aligned_cols=24 Identities=21% Similarity=0.238 Sum_probs=19.2
Q ss_pred ccccccccccchhhhhcccchhcC-CC
Q 022972 226 AGIGGLSEFLGYTSQLCYPFLHIS-YP 251 (289)
Q Consensus 226 ~~~~G~t~~~Gkt~~l~~l~~~~g-~~ 251 (289)
.+++|.. |+|||++.+.| +++| ++
T Consensus 2 i~itG~~-gsGKst~~~~l-~~~~~~~ 26 (188)
T TIGR00152 2 IGLTGGI-GSGKSTVANYL-ADKYHFP 26 (188)
T ss_pred EEEECCC-CCCHHHHHHHH-HHhcCCe
Confidence 4677777 59999999999 6666 86
No 165
>PRK08727 hypothetical protein; Validated
Probab=40.28 E-value=11 Score=33.87 Aligned_cols=30 Identities=13% Similarity=0.050 Sum_probs=21.3
Q ss_pred ccccccccccccchhhhhcccc---hhcCCCCcch
Q 022972 224 KFAGIGGLSEFLGYTSQLCYPF---LHISYPSTSF 255 (289)
Q Consensus 224 ~~~~~~G~t~~~Gkt~~l~~l~---~~~g~~~~~~ 255 (289)
....+.|.+ |+|||.+++.++ .+.|+ ++.+
T Consensus 42 ~~l~l~G~~-G~GKThL~~a~~~~~~~~~~-~~~y 74 (233)
T PRK08727 42 DWLYLSGPA-GTGKTHLALALCAAAEQAGR-SSAY 74 (233)
T ss_pred CeEEEECCC-CCCHHHHHHHHHHHHHHcCC-cEEE
Confidence 337888888 499999999962 44577 4433
No 166
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=39.64 E-value=15 Score=31.32 Aligned_cols=26 Identities=8% Similarity=-0.225 Sum_probs=21.7
Q ss_pred cccccccccccchhhhhcccchhcCCC
Q 022972 225 FAGIGGLSEFLGYTSQLCYPFLHISYP 251 (289)
Q Consensus 225 ~~~~~G~t~~~Gkt~~l~~l~~~~g~~ 251 (289)
..++.|.+ |.|||.+.+.|++..|++
T Consensus 6 ~I~liG~~-GaGKStl~~~La~~l~~~ 31 (172)
T PRK05057 6 NIFLVGPM-GAGKSTIGRQLAQQLNME 31 (172)
T ss_pred EEEEECCC-CcCHHHHHHHHHHHcCCc
Confidence 46677888 499999999997777987
No 167
>PRK01184 hypothetical protein; Provisional
Probab=39.49 E-value=14 Score=31.34 Aligned_cols=25 Identities=16% Similarity=0.113 Sum_probs=20.2
Q ss_pred cccccccccccchhhhhcccchhcCCC
Q 022972 225 FAGIGGLSEFLGYTSQLCYPFLHISYP 251 (289)
Q Consensus 225 ~~~~~G~t~~~Gkt~~l~~l~~~~g~~ 251 (289)
..+++|.. |+|||++-+ ++++.|++
T Consensus 3 ~i~l~G~~-GsGKsT~a~-~~~~~g~~ 27 (184)
T PRK01184 3 IIGVVGMP-GSGKGEFSK-IAREMGIP 27 (184)
T ss_pred EEEEECCC-CCCHHHHHH-HHHHcCCc
Confidence 46788888 499999987 55888997
No 168
>PRK14530 adenylate kinase; Provisional
Probab=39.43 E-value=12 Score=32.87 Aligned_cols=25 Identities=12% Similarity=-0.136 Sum_probs=20.5
Q ss_pred ccccccccccchhhhhcccchhcCCC
Q 022972 226 AGIGGLSEFLGYTSQLCYPFLHISYP 251 (289)
Q Consensus 226 ~~~~G~t~~~Gkt~~l~~l~~~~g~~ 251 (289)
..+.|.. |+|||++.+.||++.|++
T Consensus 6 I~i~G~p-GsGKsT~~~~La~~~~~~ 30 (215)
T PRK14530 6 ILLLGAP-GAGKGTQSSNLAEEFGVE 30 (215)
T ss_pred EEEECCC-CCCHHHHHHHHHHHhCCe
Confidence 4566777 599999999998888985
No 169
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=38.97 E-value=12 Score=33.81 Aligned_cols=26 Identities=23% Similarity=0.065 Sum_probs=20.8
Q ss_pred CccccccccccccchhhhhcccchhcC
Q 022972 223 LKFAGIGGLSEFLGYTSQLCYPFLHIS 249 (289)
Q Consensus 223 ~~~~~~~G~t~~~Gkt~~l~~l~~~~g 249 (289)
.-..|++|.| |+|||++.+++...-|
T Consensus 8 ~iiIgIaG~S-gSGKTTva~~l~~~~~ 33 (218)
T COG0572 8 VIIIGIAGGS-GSGKTTVAKELSEQLG 33 (218)
T ss_pred eEEEEEeCCC-CCCHHHHHHHHHHHhC
Confidence 3567999999 5999999999944445
No 170
>KOG3220 consensus Similar to bacterial dephospho-CoA kinase [Coenzyme transport and metabolism]
Probab=38.82 E-value=15 Score=33.01 Aligned_cols=35 Identities=14% Similarity=0.105 Sum_probs=27.3
Q ss_pred cccccccccccchhhhhcccchhcCCC--CcchhHHHHH
Q 022972 225 FAGIGGLSEFLGYTSQLCYPFLHISYP--STSFSKMTYV 261 (289)
Q Consensus 225 ~~~~~G~t~~~Gkt~~l~~l~~~~g~~--~~~~~~~~~~ 261 (289)
..|++|-+ ++||+++.+.+ ++.|+| -+--.+|=+.
T Consensus 3 iVGLTGgi-atGKStVs~~f-~~~G~~vIDaD~vaR~vv 39 (225)
T KOG3220|consen 3 IVGLTGGI-ATGKSTVSQVF-KALGIPVIDADVVAREVV 39 (225)
T ss_pred EEEeeccc-ccChHHHHHHH-HHcCCcEecHHHHHHHHh
Confidence 35788888 59999999999 888998 6666666543
No 171
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=38.81 E-value=10 Score=32.78 Aligned_cols=22 Identities=27% Similarity=0.145 Sum_probs=17.7
Q ss_pred ccccccccccchhhhhcccchhc
Q 022972 226 AGIGGLSEFLGYTSQLCYPFLHI 248 (289)
Q Consensus 226 ~~~~G~t~~~Gkt~~l~~l~~~~ 248 (289)
.+++|.+| +|||++.++|+...
T Consensus 2 IgI~G~sg-SGKTTla~~L~~~L 23 (194)
T PF00485_consen 2 IGIAGPSG-SGKTTLAKRLAQIL 23 (194)
T ss_dssp EEEEESTT-SSHHHHHHHHHHHH
T ss_pred EEEECCCC-CCHHHHHHHHHHHh
Confidence 57899994 99999999884433
No 172
>PRK09590 celB cellobiose phosphotransferase system IIB component; Reviewed
Probab=38.78 E-value=30 Score=27.40 Aligned_cols=38 Identities=16% Similarity=0.178 Sum_probs=26.3
Q ss_pred CcEEEEcCCCCchHHHHHH----HHHccCCCeeEccccHHHHH
Q 022972 173 TDLIVACQKGLRSLAACEL----LYNAGYRNLFWVQGGLEAAE 211 (289)
Q Consensus 173 ~~IVvyC~~G~RS~~aa~~----L~~~G~~nV~~L~GG~~aw~ 211 (289)
++|++.|.+|+.|+.++.. ++..|++ +.+-..+.....
T Consensus 2 kkILlvCg~G~STSlla~k~k~~~~e~gi~-~~i~a~~~~e~~ 43 (104)
T PRK09590 2 KKALIICAAGMSSSMMAKKTTEYLKEQGKD-IEVDAITATEGE 43 (104)
T ss_pred cEEEEECCCchHHHHHHHHHHHHHHHCCCc-eEEEEecHHHHH
Confidence 3689999999977776665 4556885 666566665543
No 173
>PLN03049 pyridoxine (pyridoxamine) 5'-phosphate oxidase; Provisional
Probab=38.66 E-value=46 Score=33.33 Aligned_cols=30 Identities=23% Similarity=0.368 Sum_probs=23.9
Q ss_pred CcEEEEcCCCC---chHHHHHHHHHccCCCeeEc
Q 022972 173 TDLIVACQKGL---RSLAACELLYNAGYRNLFWV 203 (289)
Q Consensus 173 ~~IVvyC~~G~---RS~~aa~~L~~~G~~nV~~L 203 (289)
++|+|+|..|+ ....+|..|...||+ |.++
T Consensus 60 ~~VlVlcG~GNNGGDGlv~AR~L~~~G~~-V~v~ 92 (462)
T PLN03049 60 RRVLALCGPGNNGGDGLVAARHLHHFGYK-PSIC 92 (462)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHHHCCCc-eEEE
Confidence 67999996444 688899999999996 6654
No 174
>PRK00023 cmk cytidylate kinase; Provisional
Probab=38.58 E-value=24 Score=31.48 Aligned_cols=27 Identities=11% Similarity=0.053 Sum_probs=23.1
Q ss_pred ccccccccccccchhhhhcccchhcCCC
Q 022972 224 KFAGIGGLSEFLGYTSQLCYPFLHISYP 251 (289)
Q Consensus 224 ~~~~~~G~t~~~Gkt~~l~~l~~~~g~~ 251 (289)
...++.|.+| +|||++.+.+|++.|++
T Consensus 5 ~~i~i~g~~g-sGksti~~~la~~~~~~ 31 (225)
T PRK00023 5 IVIAIDGPAG-SGKGTVAKILAKKLGFH 31 (225)
T ss_pred eEEEEECCCC-CCHHHHHHHHHHHhCCC
Confidence 4568889984 99999999997888996
No 175
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=38.55 E-value=12 Score=30.39 Aligned_cols=25 Identities=16% Similarity=0.024 Sum_probs=19.3
Q ss_pred ccccccccccchhhhhcccchhcCCC
Q 022972 226 AGIGGLSEFLGYTSQLCYPFLHISYP 251 (289)
Q Consensus 226 ~~~~G~t~~~Gkt~~l~~l~~~~g~~ 251 (289)
..+.|..| +|||++.+.|++..|.+
T Consensus 2 i~l~G~~G-sGKST~a~~l~~~~~~~ 26 (150)
T cd02021 2 IVVMGVSG-SGKSTVGKALAERLGAP 26 (150)
T ss_pred EEEEcCCC-CCHHHHHHHHHhhcCCE
Confidence 35778884 99999999996655654
No 176
>PRK05480 uridine/cytidine kinase; Provisional
Probab=38.54 E-value=14 Score=32.11 Aligned_cols=26 Identities=23% Similarity=0.190 Sum_probs=20.8
Q ss_pred CCccccccccccccchhhhhcccchhc
Q 022972 222 PLKFAGIGGLSEFLGYTSQLCYPFLHI 248 (289)
Q Consensus 222 ~~~~~~~~G~t~~~Gkt~~l~~l~~~~ 248 (289)
.....+++|.+| +|||++.+.|++..
T Consensus 5 ~~~iI~I~G~sG-sGKTTl~~~l~~~l 30 (209)
T PRK05480 5 KPIIIGIAGGSG-SGKTTVASTIYEEL 30 (209)
T ss_pred CCEEEEEECCCC-CCHHHHHHHHHHHh
Confidence 445778999994 99999999995543
No 177
>PRK14527 adenylate kinase; Provisional
Probab=38.46 E-value=15 Score=31.52 Aligned_cols=28 Identities=14% Similarity=-0.089 Sum_probs=22.7
Q ss_pred ccccccccccccchhhhhcccchhcCCCC
Q 022972 224 KFAGIGGLSEFLGYTSQLCYPFLHISYPS 252 (289)
Q Consensus 224 ~~~~~~G~t~~~Gkt~~l~~l~~~~g~~~ 252 (289)
+...+.|.. |+|||++.+.|+++.|++.
T Consensus 7 ~~i~i~G~p-GsGKsT~a~~La~~~~~~~ 34 (191)
T PRK14527 7 KVVIFLGPP-GAGKGTQAERLAQELGLKK 34 (191)
T ss_pred cEEEEECCC-CCCHHHHHHHHHHHhCCCC
Confidence 456777887 5999999999977778863
No 178
>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed
Probab=38.26 E-value=16 Score=34.36 Aligned_cols=30 Identities=13% Similarity=0.022 Sum_probs=25.0
Q ss_pred CCCccccccccccccchhhhhcccchhcCCC
Q 022972 221 QPLKFAGIGGLSEFLGYTSQLCYPFLHISYP 251 (289)
Q Consensus 221 ~~~~~~~~~G~t~~~Gkt~~l~~l~~~~g~~ 251 (289)
.+....++.|.. |.|||++-+.||++.|+|
T Consensus 131 ~~~~~I~l~G~~-GsGKStvg~~La~~Lg~~ 160 (309)
T PRK08154 131 ARRRRIALIGLR-GAGKSTLGRMLAARLGVP 160 (309)
T ss_pred cCCCEEEEECCC-CCCHHHHHHHHHHHcCCC
Confidence 456678888888 499999999997777996
No 179
>PRK14734 coaE dephospho-CoA kinase; Provisional
Probab=38.19 E-value=19 Score=31.48 Aligned_cols=25 Identities=12% Similarity=-0.065 Sum_probs=20.9
Q ss_pred cccccccccccchhhhhcccchhcCCC
Q 022972 225 FAGIGGLSEFLGYTSQLCYPFLHISYP 251 (289)
Q Consensus 225 ~~~~~G~t~~~Gkt~~l~~l~~~~g~~ 251 (289)
..+++|.. |.|||++.+.| ++.|++
T Consensus 3 ~igitG~i-gsGKst~~~~l-~~~g~~ 27 (200)
T PRK14734 3 RIGLTGGI-GSGKSTVADLL-SSEGFL 27 (200)
T ss_pred EEEEECCC-CCCHHHHHHHH-HHCCCe
Confidence 46778887 59999999999 668997
No 180
>COG2019 AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism]
Probab=37.93 E-value=17 Score=31.94 Aligned_cols=35 Identities=17% Similarity=0.074 Sum_probs=24.4
Q ss_pred Cccccccccccccchhhhhcccchhc-CCCCcchhHHH
Q 022972 223 LKFAGIGGLSEFLGYTSQLCYPFLHI-SYPSTSFSKMT 259 (289)
Q Consensus 223 ~~~~~~~G~t~~~Gkt~~l~~l~~~~-g~~~~~~~~~~ 259 (289)
.+..+++|..| +|||++++.+.++. ++ ..++++-+
T Consensus 4 ~kvvvitGVpG-vGKTTVl~~~~~~l~~~-~ivNyG~~ 39 (189)
T COG2019 4 RKVVVITGVPG-VGKTTVLKIALKELVKH-KIVNYGDL 39 (189)
T ss_pred ceEEEEEcCCC-CChHHHHHHHHHHHhhc-eeeeHhHH
Confidence 45678999995 99999999983433 33 55555543
No 181
>TIGR01533 lipo_e_P4 5'-nucleotidase, lipoprotein e(P4) family. which in turn belongs to the haloacid dehalogenase (HAD) superfamily of aspartate-dependent hydrolases. Members are found on the outer membrane of Gram-negative bacteria and the cytoplasmic membrane of Gram-positive bacteria. Most members have classic lipoprotein signal sequences. A critical role of this 5'-nucleotidase in Haemophilus influenzae is the degradation of external riboside in order to allow transport into the cell. An earlier suggested role in hemin transport is no longer current. This enzyme may also have other physiologically significant roles.
Probab=37.75 E-value=1.7e+02 Score=27.04 Aligned_cols=38 Identities=16% Similarity=0.268 Sum_probs=20.3
Q ss_pred HHHHHHHHhcCCCCCcEEEEcCCCCc-hHHHHHHHHHccCCC
Q 022972 159 KQFLSKVEEKLPKDTDLIVACQKGLR-SLAACELLYNAGYRN 199 (289)
Q Consensus 159 ~~f~~~~~~~l~k~~~IVvyC~~G~R-S~~aa~~L~~~G~~n 199 (289)
.+|++.+. .++.++++..+.... -..+...|+..|++.
T Consensus 124 ~e~L~~L~---~~G~~v~iVTnR~~~~~~~T~~~Lkk~Gi~~ 162 (266)
T TIGR01533 124 LDFLNYAN---SKGVKIFYVSNRSEKEKAATLKNLKRFGFPQ 162 (266)
T ss_pred HHHHHHHH---HCCCeEEEEeCCCcchHHHHHHHHHHcCcCC
Confidence 45665554 234455555443322 233556788888863
No 182
>COG1077 MreB Actin-like ATPase involved in cell morphogenesis [Cell division and chromosome partitioning]
Probab=37.74 E-value=1.1e+02 Score=29.41 Aligned_cols=59 Identities=27% Similarity=0.350 Sum_probs=44.1
Q ss_pred CCcEEEEc-CCCCc---hHHHHHHHHHccCCCeeEccccHHHHHhCCCCccCCCCCccccccc
Q 022972 172 DTDLIVAC-QKGLR---SLAACELLYNAGYRNLFWVQGGLEAAEEEDLVREGPQPLKFAGIGG 230 (289)
Q Consensus 172 ~~~IVvyC-~~G~R---S~~aa~~L~~~G~~nV~~L~GG~~aw~~~gl~~~~~~~~~~~~~~G 230 (289)
.+|.|+.| ..|.. -..+-..+..+|-++|+..+.++.+--..++|+..+...-..-|+|
T Consensus 100 ~~prI~i~vP~g~T~VErrAi~ea~~~aGa~~V~lieEp~aAAIGaglpi~ep~G~mvvDIGg 162 (342)
T COG1077 100 PKPRIVICVPSGITDVERRAIKEAAESAGAREVYLIEEPMAAAIGAGLPIMEPTGSMVVDIGG 162 (342)
T ss_pred CCCcEEEEecCCccHHHHHHHHHHHHhccCceEEEeccHHHHHhcCCCcccCCCCCEEEEeCC
Confidence 34556666 67664 2345567888999999999999999999999999777555554544
No 183
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=37.49 E-value=20 Score=35.65 Aligned_cols=27 Identities=19% Similarity=-0.038 Sum_probs=22.5
Q ss_pred ccccccccccccchhhhhcccchhcCCC
Q 022972 224 KFAGIGGLSEFLGYTSQLCYPFLHISYP 251 (289)
Q Consensus 224 ~~~~~~G~t~~~Gkt~~l~~l~~~~g~~ 251 (289)
+-..+.|.+| +|||.+.|.+|+..+.|
T Consensus 48 ~~ILLiGppG-~GKT~lAraLA~~l~~~ 74 (441)
T TIGR00390 48 KNILMIGPTG-VGKTEIARRLAKLANAP 74 (441)
T ss_pred ceEEEECCCC-CCHHHHHHHHHHHhCCe
Confidence 4567889994 99999999997777877
No 184
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=37.48 E-value=12 Score=26.76 Aligned_cols=20 Identities=20% Similarity=-0.094 Sum_probs=15.9
Q ss_pred cccccccccchhhhhcccchh
Q 022972 227 GIGGLSEFLGYTSQLCYPFLH 247 (289)
Q Consensus 227 ~~~G~t~~~Gkt~~l~~l~~~ 247 (289)
.+.|.. |+|||++.+.|++.
T Consensus 3 ~i~G~~-gsGKst~~~~l~~~ 22 (69)
T cd02019 3 AITGGS-GSGKSTVAKKLAEQ 22 (69)
T ss_pred EEECCC-CCCHHHHHHHHHHH
Confidence 567888 49999999999443
No 185
>PRK14665 mnmA tRNA-specific 2-thiouridylase MnmA; Provisional
Probab=37.32 E-value=41 Score=32.53 Aligned_cols=32 Identities=28% Similarity=0.463 Sum_probs=27.5
Q ss_pred CCCCCcEEEEcCCCCchHHHHHHHHHccCCCee
Q 022972 169 LPKDTDLIVACQKGLRSLAACELLYNAGYRNLF 201 (289)
Q Consensus 169 l~k~~~IVvyC~~G~RS~~aa~~L~~~G~~nV~ 201 (289)
++++++|+|...||..|..++.+|.+.|++ |.
T Consensus 2 ~~~~~kVlValSGGVDSsvaa~LL~~~G~~-V~ 33 (360)
T PRK14665 2 MEKNKRVLLGMSGGTDSSVAAMLLLEAGYE-VT 33 (360)
T ss_pred CCCCCEEEEEEcCCHHHHHHHHHHHHcCCe-EE
Confidence 456678999999999999999999999986 54
No 186
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=37.05 E-value=14 Score=32.15 Aligned_cols=24 Identities=29% Similarity=0.182 Sum_probs=19.3
Q ss_pred CCccccccccccccchhhhhcccch
Q 022972 222 PLKFAGIGGLSEFLGYTSQLCYPFL 246 (289)
Q Consensus 222 ~~~~~~~~G~t~~~Gkt~~l~~l~~ 246 (289)
+-...++.|.+| +|||++++.++.
T Consensus 5 ~g~vi~I~G~sG-sGKSTl~~~l~~ 28 (207)
T TIGR00235 5 KGIIIGIGGGSG-SGKTTVARKIYE 28 (207)
T ss_pred CeEEEEEECCCC-CCHHHHHHHHHH
Confidence 345678999994 999999999843
No 187
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=36.67 E-value=15 Score=30.98 Aligned_cols=24 Identities=13% Similarity=-0.056 Sum_probs=20.1
Q ss_pred cccccccccchhhhhcccchhcCCC
Q 022972 227 GIGGLSEFLGYTSQLCYPFLHISYP 251 (289)
Q Consensus 227 ~~~G~t~~~Gkt~~l~~l~~~~g~~ 251 (289)
.+.|.. |+|||++-+.||++.|++
T Consensus 3 ~i~G~p-GsGKst~a~~la~~~~~~ 26 (183)
T TIGR01359 3 FVLGGP-GSGKGTQCAKIVENFGFT 26 (183)
T ss_pred EEECCC-CCCHHHHHHHHHHHcCCe
Confidence 567777 599999999997777987
No 188
>PRK10499 PTS system N,N'-diacetylchitobiose-specific transporter subunit IIB; Provisional
Probab=36.37 E-value=46 Score=26.34 Aligned_cols=26 Identities=8% Similarity=0.176 Sum_probs=19.3
Q ss_pred CcEEEEcCCCCchHHHHHHH----HHccCC
Q 022972 173 TDLIVACQKGLRSLAACELL----YNAGYR 198 (289)
Q Consensus 173 ~~IVvyC~~G~RS~~aa~~L----~~~G~~ 198 (289)
++|++.|.+|+.|..++..+ ++.|++
T Consensus 4 kkIllvC~~G~sTSll~~km~~~~~~~gi~ 33 (106)
T PRK10499 4 KHIYLFCSAGMSTSLLVSKMRAQAEKYEVP 33 (106)
T ss_pred CEEEEECCCCccHHHHHHHHHHHHHHCCCC
Confidence 47999999999888877443 445654
No 189
>smart00012 PTPc_DSPc Protein tyrosine phosphatase, catalytic domain, undefined specificity. Protein tyrosine phosphatases. Homologues detected by this profile and not by those of "PTPc" or "DSPc" are predicted to be protein phosphatases with a similar fold to DSPs and PTPs, yet with unpredicted specificities.
Probab=36.21 E-value=71 Score=23.54 Aligned_cols=30 Identities=27% Similarity=0.547 Sum_probs=17.9
Q ss_pred HHHHHHHhcC---CCCCcEEEEcCCCC-chHHHH
Q 022972 160 QFLSKVEEKL---PKDTDLIVACQKGL-RSLAAC 189 (289)
Q Consensus 160 ~f~~~~~~~l---~k~~~IVvyC~~G~-RS~~aa 189 (289)
+|+..+.... +.+.+|+|.|..|. |+...+
T Consensus 24 ~~~~~v~~~~~~~~~~~pvlVHC~~G~gRtg~~~ 57 (105)
T smart00012 24 EFLRAVKKNLNQSSSSGPVVVHCSAGVGRTGTFV 57 (105)
T ss_pred HHHHHHHHHHHhcCCCCCEEEEeCCCCChhhHHH
Confidence 4444444332 23569999997554 776544
No 190
>smart00404 PTPc_motif Protein tyrosine phosphatase, catalytic domain motif.
Probab=36.21 E-value=71 Score=23.54 Aligned_cols=30 Identities=27% Similarity=0.547 Sum_probs=17.9
Q ss_pred HHHHHHHhcC---CCCCcEEEEcCCCC-chHHHH
Q 022972 160 QFLSKVEEKL---PKDTDLIVACQKGL-RSLAAC 189 (289)
Q Consensus 160 ~f~~~~~~~l---~k~~~IVvyC~~G~-RS~~aa 189 (289)
+|+..+.... +.+.+|+|.|..|. |+...+
T Consensus 24 ~~~~~v~~~~~~~~~~~pvlVHC~~G~gRtg~~~ 57 (105)
T smart00404 24 EFLRAVKKNLNQSSSSGPVVVHCSAGVGRTGTFV 57 (105)
T ss_pred HHHHHHHHHHHhcCCCCCEEEEeCCCCChhhHHH
Confidence 4444444332 23569999997554 776544
No 191
>PRK13975 thymidylate kinase; Provisional
Probab=36.04 E-value=15 Score=31.38 Aligned_cols=25 Identities=24% Similarity=0.175 Sum_probs=20.7
Q ss_pred ccccccccccccchhhhhcccchhcC
Q 022972 224 KFAGIGGLSEFLGYTSQLCYPFLHIS 249 (289)
Q Consensus 224 ~~~~~~G~t~~~Gkt~~l~~l~~~~g 249 (289)
.+.++.|.. |+|||++.+.|+++.+
T Consensus 3 ~~I~ieG~~-GsGKtT~~~~L~~~l~ 27 (196)
T PRK13975 3 KFIVFEGID-GSGKTTQAKLLAEKLN 27 (196)
T ss_pred eEEEEECCC-CCCHHHHHHHHHHHhC
Confidence 467888998 4999999999966656
No 192
>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor. TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).
Probab=36.03 E-value=14 Score=31.05 Aligned_cols=25 Identities=20% Similarity=0.235 Sum_probs=19.1
Q ss_pred cccccccccccchhhhhcccchhc---CC
Q 022972 225 FAGIGGLSEFLGYTSQLCYPFLHI---SY 250 (289)
Q Consensus 225 ~~~~~G~t~~~Gkt~~l~~l~~~~---g~ 250 (289)
+.++-|.. |+|||++.+.|++.. |+
T Consensus 2 ~I~ieG~~-GsGKtT~~~~L~~~l~~~g~ 29 (200)
T cd01672 2 FIVFEGID-GAGKTTLIELLAERLEARGY 29 (200)
T ss_pred EEEEECCC-CCCHHHHHHHHHHHHHHcCC
Confidence 45677888 499999999995443 66
No 193
>PRK10824 glutaredoxin-4; Provisional
Probab=36.02 E-value=88 Score=25.25 Aligned_cols=75 Identities=11% Similarity=-0.050 Sum_probs=43.5
Q ss_pred CCcEEEEcCC------CCchHHHHHHHHHccCCC-eeEccccHHHHHhCCCCccCCCCCccccccccccccchhhhhccc
Q 022972 172 DTDLIVACQK------GLRSLAACELLYNAGYRN-LFWVQGGLEAAEEEDLVREGPQPLKFAGIGGLSEFLGYTSQLCYP 244 (289)
Q Consensus 172 ~~~IVvyC~~------G~RS~~aa~~L~~~G~~n-V~~L~GG~~aw~~~gl~~~~~~~~~~~~~~G~t~~~Gkt~~l~~l 244 (289)
+.+||||-.+ ...+..+...|...|.+. ++.+...- .-+++=....+....+-.-++|. ++|-.+.+.+|
T Consensus 14 ~~~Vvvf~Kg~~~~p~Cpyc~~ak~lL~~~~i~~~~idi~~d~-~~~~~l~~~sg~~TVPQIFI~G~--~IGG~ddl~~l 90 (115)
T PRK10824 14 ENPILLYMKGSPKLPSCGFSAQAVQALSACGERFAYVDILQNP-DIRAELPKYANWPTFPQLWVDGE--LVGGCDIVIEM 90 (115)
T ss_pred cCCEEEEECCCCCCCCCchHHHHHHHHHHcCCCceEEEecCCH-HHHHHHHHHhCCCCCCeEEECCE--EEcChHHHHHH
Confidence 3588888753 346888999999999642 34443322 22221011111223344456666 58888888888
Q ss_pred chhcCC
Q 022972 245 FLHISY 250 (289)
Q Consensus 245 ~~~~g~ 250 (289)
.+.|-
T Consensus 91 -~~~G~ 95 (115)
T PRK10824 91 -YQRGE 95 (115)
T ss_pred -HHCCC
Confidence 66665
No 194
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=35.97 E-value=19 Score=29.86 Aligned_cols=28 Identities=11% Similarity=-0.133 Sum_probs=22.6
Q ss_pred CccccccccccccchhhhhcccchhcCCC
Q 022972 223 LKFAGIGGLSEFLGYTSQLCYPFLHISYP 251 (289)
Q Consensus 223 ~~~~~~~G~t~~~Gkt~~l~~l~~~~g~~ 251 (289)
-....+.|.. |.|||.+.|.+++..|.+
T Consensus 22 ~~~i~l~G~l-GaGKTtl~~~l~~~lg~~ 49 (133)
T TIGR00150 22 GTVVLLKGDL-GAGKTTLVQGLLQGLGIQ 49 (133)
T ss_pred CCEEEEEcCC-CCCHHHHHHHHHHHcCCC
Confidence 3466788888 499999999997777875
No 195
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=35.92 E-value=16 Score=28.27 Aligned_cols=25 Identities=16% Similarity=-0.186 Sum_probs=19.4
Q ss_pred Cccccccccccccchhhhhcccchhc
Q 022972 223 LKFAGIGGLSEFLGYTSQLCYPFLHI 248 (289)
Q Consensus 223 ~~~~~~~G~t~~~Gkt~~l~~l~~~~ 248 (289)
.....+.|.+ |+|||.+++.++..-
T Consensus 19 ~~~v~i~G~~-G~GKT~l~~~i~~~~ 43 (151)
T cd00009 19 PKNLLLYGPP-GTGKTTLARAIANEL 43 (151)
T ss_pred CCeEEEECCC-CCCHHHHHHHHHHHh
Confidence 3456788888 499999999985544
No 196
>COG1763 MobB Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]
Probab=35.78 E-value=14 Score=31.74 Aligned_cols=26 Identities=27% Similarity=0.272 Sum_probs=19.8
Q ss_pred ccccccccccccchhhhhcccc---hhcCC
Q 022972 224 KFAGIGGLSEFLGYTSQLCYPF---LHISY 250 (289)
Q Consensus 224 ~~~~~~G~t~~~Gkt~~l~~l~---~~~g~ 250 (289)
+..++.|.++ +|||+++.++. +++||
T Consensus 3 ~Il~ivG~k~-SGKTTLie~lv~~L~~~G~ 31 (161)
T COG1763 3 KILGIVGYKN-SGKTTLIEKLVRKLKARGY 31 (161)
T ss_pred cEEEEEecCC-CChhhHHHHHHHHHHhCCc
Confidence 4567888885 99999887752 56688
No 197
>PRK11860 bifunctional 3-phosphoshikimate 1-carboxyvinyltransferase/cytidine monophosphate kinase; Provisional
Probab=35.77 E-value=27 Score=36.39 Aligned_cols=51 Identities=12% Similarity=0.009 Sum_probs=34.7
Q ss_pred CCeeEccccHHHHHh----CCCCccCCCCCccccccccccccchhhhhcccchhcCCC
Q 022972 198 RNLFWVQGGLEAAEE----EDLVREGPQPLKFAGIGGLSEFLGYTSQLCYPFLHISYP 251 (289)
Q Consensus 198 ~nV~~L~GG~~aw~~----~gl~~~~~~~~~~~~~~G~t~~~Gkt~~l~~l~~~~g~~ 251 (289)
+|...+.-+|+.+-+ -|.+.. .+.....+-|.+| +|||++-+.||++.||+
T Consensus 415 ~~~~~v~ksyP~F~~~l~~Lg~~~~--~~~~~i~i~g~~~-~gks~~~~~l~~~~~~~ 469 (661)
T PRK11860 415 NDPKCVAKTFPDYFEALFSVAQADA--DRVPVICIDGPTA-SGKGTVAARVAEALGYH 469 (661)
T ss_pred eccCeeecCCCChHHHHHHhcCCcc--cCcceEEeeCCCC-CCHHHHHHHHHHHhCCe
Confidence 344556666665433 244432 2344678899994 99999999998888997
No 198
>COG1660 Predicted P-loop-containing kinase [General function prediction only]
Probab=35.73 E-value=16 Score=34.11 Aligned_cols=26 Identities=23% Similarity=0.281 Sum_probs=22.1
Q ss_pred ccccccccccccchhhhhcccchhcCCC
Q 022972 224 KFAGIGGLSEFLGYTSQLCYPFLHISYP 251 (289)
Q Consensus 224 ~~~~~~G~t~~~Gkt~~l~~l~~~~g~~ 251 (289)
.+..++|.|| .|||.-+|.| +..||=
T Consensus 2 ~lvIVTGlSG-AGKsvAl~~l-EDlGyy 27 (286)
T COG1660 2 RLVIVTGLSG-AGKSVALRVL-EDLGYY 27 (286)
T ss_pred cEEEEecCCC-CcHHHHHHHH-HhcCee
Confidence 4567899995 9999999999 788983
No 199
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=35.61 E-value=9.5 Score=36.51 Aligned_cols=32 Identities=9% Similarity=0.182 Sum_probs=24.0
Q ss_pred ccccccccccchhhhhcccchhcCCC--CcchhHH
Q 022972 226 AGIGGLSEFLGYTSQLCYPFLHISYP--STSFSKM 258 (289)
Q Consensus 226 ~~~~G~t~~~Gkt~~l~~l~~~~g~~--~~~~~~~ 258 (289)
..+.|.+ |+|||.+.+.+|++.|+| |..+...
T Consensus 67 ilL~G~p-GtGKTtla~~lA~~l~~~~~rV~~~~~ 100 (327)
T TIGR01650 67 VMVQGYH-GTGKSTHIEQIAARLNWPCVRVNLDSH 100 (327)
T ss_pred EEEEeCC-CChHHHHHHHHHHHHCCCeEEEEecCC
Confidence 4566777 489999999998888988 5544433
No 200
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=35.49 E-value=14 Score=33.08 Aligned_cols=48 Identities=21% Similarity=0.179 Sum_probs=33.2
Q ss_pred CCCee-EccccHHHHHhCCCCccCCCCCccccccccccccchhhhhcccchhc
Q 022972 197 YRNLF-WVQGGLEAAEEEDLVREGPQPLKFAGIGGLSEFLGYTSQLCYPFLHI 248 (289)
Q Consensus 197 ~~nV~-~L~GG~~aw~~~gl~~~~~~~~~~~~~~G~t~~~Gkt~~l~~l~~~~ 248 (289)
|+||. .+.+|-.+.++-.+.+ .+-.+.-++|.|| .||++++|-+..++
T Consensus 4 f~~V~k~Y~~g~~aL~~vs~~i---~~Gef~fl~GpSG-AGKSTllkLi~~~e 52 (223)
T COG2884 4 FENVSKAYPGGREALRDVSFHI---PKGEFVFLTGPSG-AGKSTLLKLIYGEE 52 (223)
T ss_pred ehhhhhhcCCCchhhhCceEee---cCceEEEEECCCC-CCHHHHHHHHHhhh
Confidence 34554 5566655666655554 3567888999995 99999999875554
No 201
>PLN02199 shikimate kinase
Probab=34.98 E-value=17 Score=34.50 Aligned_cols=28 Identities=14% Similarity=-0.085 Sum_probs=22.8
Q ss_pred CccccccccccccchhhhhcccchhcCCC
Q 022972 223 LKFAGIGGLSEFLGYTSQLCYPFLHISYP 251 (289)
Q Consensus 223 ~~~~~~~G~t~~~Gkt~~l~~l~~~~g~~ 251 (289)
-....+.|.. |.|||.+.+.||+..|||
T Consensus 102 ~~~I~LIG~~-GSGKSTVgr~LA~~Lg~~ 129 (303)
T PLN02199 102 GRSMYLVGMM-GSGKTTVGKLMSKVLGYT 129 (303)
T ss_pred CCEEEEECCC-CCCHHHHHHHHHHHhCCC
Confidence 3456777887 499999999997778997
No 202
>TIGR02689 ars_reduc_gluta arsenate reductase, glutathione/glutaredoxin type. Members of this protein family represent a novel form of arsenate reductase, using glutathione and glutaredoxin rather than thioredoxin for reducing equivalents as do some homologous arsenate reductases. An example of this type is Synechocystis sp. strain PCC 6803 slr0946, and of latter type (excluded from this model) is Staphylococcus aureus plasmid pI258 ArsC. Both are among the subset of arsenate reductases that belong the the low-molecular-weight protein-tyrosine phosphatase superfamily.
Probab=34.88 E-value=57 Score=26.22 Aligned_cols=34 Identities=24% Similarity=0.347 Sum_probs=23.5
Q ss_pred cEEEEcC-CCCchHHHHHHHHHccCCCeeEccccH
Q 022972 174 DLIVACQ-KGLRSLAACELLYNAGYRNLFWVQGGL 207 (289)
Q Consensus 174 ~IVvyC~-~G~RS~~aa~~L~~~G~~nV~~L~GG~ 207 (289)
+|++.|. +-.||..|..+|+.++-.++.+...|.
T Consensus 2 ~vlfvC~~N~cRS~mAEa~~~~~~~~~~~v~SAG~ 36 (126)
T TIGR02689 2 KVMFVCKRNSCRSQMAEGFAKTLGAGNIAVTSAGL 36 (126)
T ss_pred eEEEEcCCcHHHHHHHHHHHHHhcCCCEEEEcCcC
Confidence 5788885 445888888888876544565566664
No 203
>PF06723 MreB_Mbl: MreB/Mbl protein; InterPro: IPR004753 Bacterial cell shape varies greatly between species, and characteristic morphologies are used for identification purposes. In addition to individual cell shape, the way in which groups of cells are arranged is also typical of some bacterial species, especially Gram-positive coccoids. For many years, it was believed that micro-organisms with other than spheroidal cell shapes maintained morphology by means of their external cell walls. Recently, however, studies of the Gram-positive rod Bacillus subtilis have revealed two related genes that are essential for the integrity of cell morphogenesis []. Termed mreB and mbl, the gene products localise close to the cell surface, forming filamentous helical structures. Many homologues have been found in diverse bacterial groups, suggesting a common ancestor []. The crystal structure of MreB from Thermotoga maritima has been resolved using X-ray crystallography []. It consists of 19 beta-strands and 15 alpha- helices, and shows remarkable structural similarity to eukaryotic actin. MreB crystals also contain proto-filaments, with individual proteins assembling into polymers like F-actin, in the same orientation. It is hypothesised therefore, that MreB was the forerunner of actin in early eukaryotes [].; GO: 0000902 cell morphogenesis; PDB: 1JCF_A 1JCE_A 2WUS_A 1JCG_A.
Probab=34.85 E-value=99 Score=29.54 Aligned_cols=72 Identities=24% Similarity=0.309 Sum_probs=41.7
Q ss_pred HHHHHHHHhcCCCCCcEEEEc-CCCCc---hHHHHHHHHHccCCCeeEccccHHHHHhCCCCccCCCCCccccccc
Q 022972 159 KQFLSKVEEKLPKDTDLIVAC-QKGLR---SLAACELLYNAGYRNLFWVQGGLEAAEEEDLVREGPQPLKFAGIGG 230 (289)
Q Consensus 159 ~~f~~~~~~~l~k~~~IVvyC-~~G~R---S~~aa~~L~~~G~~nV~~L~GG~~aw~~~gl~~~~~~~~~~~~~~G 230 (289)
..|+++......-.+|-++.| +.+.. -..+...+..+|.++|+.++-.+.+-...|+++..+.+.-..-+||
T Consensus 79 ~~~l~k~~~~~~~~~p~vvi~vP~~~T~verrA~~~a~~~aGa~~V~li~ep~AaAiGaGl~i~~~~g~miVDIG~ 154 (326)
T PF06723_consen 79 RYFLKKALGRRSFFRPRVVICVPSGITEVERRALIDAARQAGARKVYLIEEPIAAAIGAGLDIFEPRGSMIVDIGG 154 (326)
T ss_dssp HHHHHHHHTSS-SS--EEEEEE-SS--HHHHHHHHHHHHHTT-SEEEEEEHHHHHHHHTT--TTSSS-EEEEEE-S
T ss_pred HHHHHHhccCCCCCCCeEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEecchHHHHhcCCCCCCCCCceEEEEECC
Confidence 344554443212245666666 66653 3345567788999999999999999999999998766655555544
No 204
>TIGR00365 monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.
Probab=34.69 E-value=60 Score=24.97 Aligned_cols=76 Identities=12% Similarity=-0.006 Sum_probs=40.9
Q ss_pred CCCcEEEEcCC------CCchHHHHHHHHHccCCC-eeEccccHHHHHhCCCCccCCCCCccccccccccccchhhhhcc
Q 022972 171 KDTDLIVACQK------GLRSLAACELLYNAGYRN-LFWVQGGLEAAEEEDLVREGPQPLKFAGIGGLSEFLGYTSQLCY 243 (289)
Q Consensus 171 k~~~IVvyC~~------G~RS~~aa~~L~~~G~~n-V~~L~GG~~aw~~~gl~~~~~~~~~~~~~~G~t~~~Gkt~~l~~ 243 (289)
++.+||||..+ ...+..+-..|...|++- ...+... .+.+++=....+....+...++|. .+|--+.+.+
T Consensus 10 ~~~~Vvvf~kg~~~~~~Cp~C~~ak~lL~~~~i~~~~~di~~~-~~~~~~l~~~tg~~tvP~vfi~g~--~iGG~ddl~~ 86 (97)
T TIGR00365 10 KENPVVLYMKGTPQFPQCGFSARAVQILKACGVPFAYVNVLED-PEIRQGIKEYSNWPTIPQLYVKGE--FVGGCDIIME 86 (97)
T ss_pred ccCCEEEEEccCCCCCCCchHHHHHHHHHHcCCCEEEEECCCC-HHHHHHHHHHhCCCCCCEEEECCE--EEeChHHHHH
Confidence 44689999742 345778999999999852 2233222 222222111112223344456666 4666666666
Q ss_pred cchhcCC
Q 022972 244 PFLHISY 250 (289)
Q Consensus 244 l~~~~g~ 250 (289)
| .+.|-
T Consensus 87 l-~~~g~ 92 (97)
T TIGR00365 87 M-YQSGE 92 (97)
T ss_pred H-HHCcC
Confidence 6 45553
No 205
>PRK14532 adenylate kinase; Provisional
Probab=34.66 E-value=16 Score=30.99 Aligned_cols=24 Identities=13% Similarity=-0.171 Sum_probs=20.1
Q ss_pred cccccccccchhhhhcccchhcCCC
Q 022972 227 GIGGLSEFLGYTSQLCYPFLHISYP 251 (289)
Q Consensus 227 ~~~G~t~~~Gkt~~l~~l~~~~g~~ 251 (289)
.+.|.. |+|||++-+.||++.|++
T Consensus 4 ~~~G~p-GsGKsT~a~~la~~~g~~ 27 (188)
T PRK14532 4 ILFGPP-AAGKGTQAKRLVEERGMV 27 (188)
T ss_pred EEECCC-CCCHHHHHHHHHHHcCCe
Confidence 456776 599999999998888997
No 206
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=34.54 E-value=13 Score=29.19 Aligned_cols=23 Identities=17% Similarity=0.073 Sum_probs=16.4
Q ss_pred ccccccccccccchhhhhcccchh
Q 022972 224 KFAGIGGLSEFLGYTSQLCYPFLH 247 (289)
Q Consensus 224 ~~~~~~G~t~~~Gkt~~l~~l~~~ 247 (289)
....+.|.+| +|||.+++.++++
T Consensus 5 ~~~~i~G~~G-~GKT~~~~~~~~~ 27 (131)
T PF13401_consen 5 RILVISGPPG-SGKTTLIKRLARQ 27 (131)
T ss_dssp --EEEEE-TT-SSHHHHHHHHHHH
T ss_pred cccEEEcCCC-CCHHHHHHHHHHH
Confidence 4567888884 9999999998444
No 207
>PRK00698 tmk thymidylate kinase; Validated
Probab=34.19 E-value=15 Score=31.29 Aligned_cols=22 Identities=23% Similarity=0.184 Sum_probs=18.4
Q ss_pred ccccccccccccchhhhhcccch
Q 022972 224 KFAGIGGLSEFLGYTSQLCYPFL 246 (289)
Q Consensus 224 ~~~~~~G~t~~~Gkt~~l~~l~~ 246 (289)
.+.++.|.+ |+|||++.+.|++
T Consensus 4 ~~I~ieG~~-gsGKsT~~~~L~~ 25 (205)
T PRK00698 4 MFITIEGID-GAGKSTQIELLKE 25 (205)
T ss_pred eEEEEECCC-CCCHHHHHHHHHH
Confidence 467888998 4999999999954
No 208
>PTZ00301 uridine kinase; Provisional
Probab=34.06 E-value=16 Score=32.52 Aligned_cols=21 Identities=29% Similarity=0.218 Sum_probs=17.5
Q ss_pred Cccccccccccccchhhhhccc
Q 022972 223 LKFAGIGGLSEFLGYTSQLCYP 244 (289)
Q Consensus 223 ~~~~~~~G~t~~~Gkt~~l~~l 244 (289)
....+++|.|| +|||++.+.+
T Consensus 3 ~~iIgIaG~Sg-SGKTTla~~l 23 (210)
T PTZ00301 3 CTVIGISGASG-SGKSSLSTNI 23 (210)
T ss_pred CEEEEEECCCc-CCHHHHHHHH
Confidence 35679999995 9999999766
No 209
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=34.01 E-value=32 Score=26.93 Aligned_cols=14 Identities=7% Similarity=0.249 Sum_probs=5.0
Q ss_pred HHHHHHHHHHHHHH
Q 022972 32 LVVFCFFSMFFFLK 45 (289)
Q Consensus 32 ~~~l~l~~~l~~l~ 45 (289)
+++|.+++++++|+
T Consensus 6 ~llL~l~LA~lLli 19 (95)
T PF07172_consen 6 FLLLGLLLAALLLI 19 (95)
T ss_pred HHHHHHHHHHHHHH
Confidence 33333333333333
No 210
>PF10144 SMP_2: Bacterial virulence factor haemolysin; InterPro: IPR019305 This entry represents a group of bacterial proteins that are membrane proteins that effect the expression of haemolysin under anaerobic conditions [].
Probab=33.94 E-value=98 Score=27.73 Aligned_cols=71 Identities=11% Similarity=0.046 Sum_probs=32.3
Q ss_pred HHHHHHHHHHhhhccccCCCchhhhhhhhHHHHHHHHHHHhhhCCCc--ceeCHHHHHHhhc--CCCcEEEEeCC
Q 022972 37 FFSMFFFLKNLGGIRMQAGGEEYELKQMRDMAAAKKRWDALIRDGKV--KVLTPREAGYAVQ--LSSKTLLDVRP 107 (289)
Q Consensus 37 l~~~l~~l~~~g~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~Is~~el~~~l~--~~~~vlIDVRs 107 (289)
++.++++++..|....+..+.....+|.++.+..-.+..+....... ..-+-+++..+++ .++..|+|+.=
T Consensus 18 iclall~~i~~g~~~~~~~~q~~~~~Q~e~La~~L~~Q~A~~as~~l~~~~~d~e~L~~ll~~L~~d~~VldAsI 92 (210)
T PF10144_consen 18 ICLALLVIIMQGVSWFSLSSQQARSNQVENLARSLVRQAANSASPLLGSKNQDQEQLQQLLNQLAKDPFVLDASI 92 (210)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHhcCCeEeEEEE
Confidence 33333333333443333333333345555554443333332322333 3445566665554 34678888873
No 211
>PLN02918 pyridoxine (pyridoxamine) 5'-phosphate oxidase
Probab=33.67 E-value=60 Score=33.31 Aligned_cols=30 Identities=27% Similarity=0.491 Sum_probs=23.9
Q ss_pred CcEEEEcCCCC---chHHHHHHHHHccCCCeeEc
Q 022972 173 TDLIVACQKGL---RSLAACELLYNAGYRNLFWV 203 (289)
Q Consensus 173 ~~IVvyC~~G~---RS~~aa~~L~~~G~~nV~~L 203 (289)
++|+|+|..|+ ....+|..|...||+ |.++
T Consensus 136 ~~VlVlcGpGNNGGDGLVaAR~L~~~G~~-V~V~ 168 (544)
T PLN02918 136 SRVLAICGPGNNGGDGLVAARHLHHFGYK-PFVC 168 (544)
T ss_pred CEEEEEECCCcCHHHHHHHHHHHHHCCCc-eEEE
Confidence 57999996444 678899999999996 6654
No 212
>cd05564 PTS_IIB_chitobiose_lichenan PTS_IIB_chitobiose_lichenan: subunit IIB of enzyme II (EII) of the N,N-diacetylchitobiose-specific and lichenan-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In these systems, EII is either a lichenan- or an N,N-diacetylchitobiose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. In the chitobiose system, these subunits are expressed as separate proteins from chbA, chbB, and chbC of the chb operon (formerly the cel (cellulose) operon). In the lichenan system, these subunits are expressed from licA, licB, and licC of the lic operon. The lic operon of Bacillus subtilis is required for the transport and degradation of oligomeric beta-glucosides, which are produced by extracellular enzymes on substrates such as lichenan or barley glucan. The lic operon is transcribed from a gammaA-dependent promoter and is inducible by lichenan, lichenan hydrolysate, and cellobiose. The IIB d
Probab=33.63 E-value=43 Score=25.82 Aligned_cols=37 Identities=11% Similarity=0.117 Sum_probs=25.9
Q ss_pred cEEEEcCCCCchHHHHHH----HHHccCCCeeEccccHHHHH
Q 022972 174 DLIVACQKGLRSLAACEL----LYNAGYRNLFWVQGGLEAAE 211 (289)
Q Consensus 174 ~IVvyC~~G~RS~~aa~~----L~~~G~~nV~~L~GG~~aw~ 211 (289)
+|++.|.+|+.|..++.. +++.|++ +.+-..++....
T Consensus 1 kIl~~Cg~G~sTS~~~~ki~~~~~~~~~~-~~v~~~~~~~~~ 41 (96)
T cd05564 1 KILLVCSAGMSTSILVKKMKKAAEKRGID-AEIEAVPESELE 41 (96)
T ss_pred CEEEEcCCCchHHHHHHHHHHHHHHCCCc-eEEEEecHHHHH
Confidence 478999999987766654 4556875 666666666654
No 213
>PRK10310 PTS system galactitol-specific transporter subunit IIB; Provisional
Probab=33.62 E-value=86 Score=24.09 Aligned_cols=38 Identities=26% Similarity=0.317 Sum_probs=25.2
Q ss_pred cEEEEcCCCCc-hHHHH----HHHHHccCCCeeEccccHHHHHh
Q 022972 174 DLIVACQKGLR-SLAAC----ELLYNAGYRNLFWVQGGLEAAEE 212 (289)
Q Consensus 174 ~IVvyC~~G~R-S~~aa----~~L~~~G~~nV~~L~GG~~aw~~ 212 (289)
+|++.|.+|.- |..++ ..|.+.|++ +.+....+.....
T Consensus 4 kILvvCgsG~~TS~m~~~ki~~~l~~~gi~-~~v~~~~~~e~~~ 46 (94)
T PRK10310 4 KIIVACGGAVATSTMAAEEIKELCQSHNIP-VELIQCRVNEIET 46 (94)
T ss_pred eEEEECCCchhHHHHHHHHHHHHHHHCCCe-EEEEEecHHHHhh
Confidence 69999999995 44434 456667885 6666656665543
No 214
>PRK14732 coaE dephospho-CoA kinase; Provisional
Probab=33.53 E-value=23 Score=30.97 Aligned_cols=33 Identities=21% Similarity=0.111 Sum_probs=24.2
Q ss_pred ccccccccccchhhhhcccchhcCCC--CcchhHHHH
Q 022972 226 AGIGGLSEFLGYTSQLCYPFLHISYP--STSFSKMTY 260 (289)
Q Consensus 226 ~~~~G~t~~~Gkt~~l~~l~~~~g~~--~~~~~~~~~ 260 (289)
.+++|.. |+|||++.+.+ ++.|++ .+--.+|-+
T Consensus 2 i~itG~~-gsGKst~~~~l-~~~g~~~i~~D~i~~~~ 36 (196)
T PRK14732 2 IGITGMI-GGGKSTALKIL-EELGAFGISADRLAKRY 36 (196)
T ss_pred EEEECCC-CccHHHHHHHH-HHCCCEEEecchHHHHH
Confidence 4677887 49999999999 777887 554454443
No 215
>PTZ00451 dephospho-CoA kinase; Provisional
Probab=33.46 E-value=18 Score=33.03 Aligned_cols=33 Identities=9% Similarity=-0.013 Sum_probs=24.5
Q ss_pred cccccccccccchhhhhcccchh-cCCC--CcchhHHH
Q 022972 225 FAGIGGLSEFLGYTSQLCYPFLH-ISYP--STSFSKMT 259 (289)
Q Consensus 225 ~~~~~G~t~~~Gkt~~l~~l~~~-~g~~--~~~~~~~~ 259 (289)
..|+||-- |+|||++.+.| ++ .|+| .+--.+|=
T Consensus 3 iIGlTGgI-gSGKStVs~~L-~~~~G~~viDaD~iar~ 38 (244)
T PTZ00451 3 LIGLTGGI-ACGKSTVSRIL-REEHHIEVIDADLVVRE 38 (244)
T ss_pred EEEEECCC-CCCHHHHHHHH-HHHcCCeEEehHHHHHH
Confidence 46788888 59999999999 65 4987 55555544
No 216
>PRK10081 entericidin B membrane lipoprotein; Provisional
Probab=33.45 E-value=1.2e+02 Score=20.88 Aligned_cols=27 Identities=11% Similarity=0.039 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHhhhccccCCCch
Q 022972 32 LVVFCFFSMFFFLKNLGGIRMQAGGEE 58 (289)
Q Consensus 32 ~~~l~l~~~l~~l~~~g~~~~~a~~~~ 58 (289)
.+.+++.+++..+.+.+|...+..+++
T Consensus 5 ~i~~i~~~l~~~~~l~~CnTv~G~G~D 31 (48)
T PRK10081 5 TIAAIFSVLVLSTVLTACNTTRGVGED 31 (48)
T ss_pred HHHHHHHHHHHHHHHhhhhhhhhhhHh
Confidence 334444445566667888666555444
No 217
>PRK06696 uridine kinase; Validated
Probab=33.44 E-value=19 Score=31.91 Aligned_cols=26 Identities=19% Similarity=0.013 Sum_probs=20.9
Q ss_pred CCccccccccccccchhhhhcccchhc
Q 022972 222 PLKFAGIGGLSEFLGYTSQLCYPFLHI 248 (289)
Q Consensus 222 ~~~~~~~~G~t~~~Gkt~~l~~l~~~~ 248 (289)
.....++.|.+| +|||++.++|++..
T Consensus 21 ~~~iI~I~G~sg-sGKSTlA~~L~~~l 46 (223)
T PRK06696 21 RPLRVAIDGITA-SGKTTFADELAEEI 46 (223)
T ss_pred CceEEEEECCCC-CCHHHHHHHHHHHH
Confidence 346789999994 99999999995544
No 218
>PRK00091 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Reviewed
Probab=33.26 E-value=18 Score=34.13 Aligned_cols=26 Identities=19% Similarity=-0.014 Sum_probs=21.5
Q ss_pred ccccccccccccchhhhhcccchhcCC
Q 022972 224 KFAGIGGLSEFLGYTSQLCYPFLHISY 250 (289)
Q Consensus 224 ~~~~~~G~t~~~Gkt~~l~~l~~~~g~ 250 (289)
+..++.|.|| +|||++-..||++.+.
T Consensus 5 ~~i~i~Gptg-sGKt~la~~la~~~~~ 30 (307)
T PRK00091 5 KVIVIVGPTA-SGKTALAIELAKRLNG 30 (307)
T ss_pred eEEEEECCCC-cCHHHHHHHHHHhCCC
Confidence 5678999995 9999999999766554
No 219
>PF02590 SPOUT_MTase: Predicted SPOUT methyltransferase; InterPro: IPR003742 This family of proteins are predicted to be SPOUT methyltransferases []. ; GO: 0008168 methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1VH0_E 4FAK_A 1TO0_G 1O6D_A 1NS5_B.
Probab=33.20 E-value=62 Score=27.51 Aligned_cols=46 Identities=20% Similarity=0.407 Sum_probs=30.3
Q ss_pred HHHhcCCCCCcEEEEcCCCC--chHHHHHHHHH---ccCCCeeEccccHHH
Q 022972 164 KVEEKLPKDTDLIVACQKGL--RSLAACELLYN---AGYRNLFWVQGGLEA 209 (289)
Q Consensus 164 ~~~~~l~k~~~IVvyC~~G~--RS~~aa~~L~~---~G~~nV~~L~GG~~a 209 (289)
++...++++..+|+.+..|. .|...|..|.. .|..++..+-||-.+
T Consensus 59 ~il~~i~~~~~~i~Ld~~Gk~~sS~~fA~~l~~~~~~g~~~i~F~IGG~~G 109 (155)
T PF02590_consen 59 RILKKIPPNDYVILLDERGKQLSSEEFAKKLERWMNQGKSDIVFIIGGADG 109 (155)
T ss_dssp HHHCTSHTTSEEEEE-TTSEE--HHHHHHHHHHHHHTTS-EEEEEE-BTTB
T ss_pred HHHhhccCCCEEEEEcCCCccCChHHHHHHHHHHHhcCCceEEEEEecCCC
Confidence 44445677778888887776 58888888776 577678887777443
No 220
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=33.13 E-value=18 Score=30.64 Aligned_cols=24 Identities=17% Similarity=-0.078 Sum_probs=19.2
Q ss_pred cccccccccchhhhhcccchhcCCC
Q 022972 227 GIGGLSEFLGYTSQLCYPFLHISYP 251 (289)
Q Consensus 227 ~~~G~t~~~Gkt~~l~~l~~~~g~~ 251 (289)
.+.|.. |+|||.+.+.||++-|++
T Consensus 3 ~i~G~p-GsGKst~a~~La~~~~~~ 26 (194)
T cd01428 3 LLLGPP-GSGKGTQAERLAKKYGLP 26 (194)
T ss_pred EEECCC-CCCHHHHHHHHHHHcCCe
Confidence 456766 599999999996666886
No 221
>PRK02496 adk adenylate kinase; Provisional
Probab=33.05 E-value=18 Score=30.63 Aligned_cols=26 Identities=19% Similarity=0.033 Sum_probs=20.4
Q ss_pred ccccccccccchhhhhcccchhcCCCC
Q 022972 226 AGIGGLSEFLGYTSQLCYPFLHISYPS 252 (289)
Q Consensus 226 ~~~~G~t~~~Gkt~~l~~l~~~~g~~~ 252 (289)
..+.|.. |+|||++.+.|+++.|++.
T Consensus 4 i~i~G~p-GsGKst~a~~la~~~~~~~ 29 (184)
T PRK02496 4 LIFLGPP-GAGKGTQAVVLAEHLHIPH 29 (184)
T ss_pred EEEECCC-CCCHHHHHHHHHHHhCCcE
Confidence 4556777 5999999999966778863
No 222
>PRK00300 gmk guanylate kinase; Provisional
Probab=33.04 E-value=19 Score=31.00 Aligned_cols=26 Identities=12% Similarity=-0.066 Sum_probs=20.4
Q ss_pred CCccccccccccccchhhhhcccchhc
Q 022972 222 PLKFAGIGGLSEFLGYTSQLCYPFLHI 248 (289)
Q Consensus 222 ~~~~~~~~G~t~~~Gkt~~l~~l~~~~ 248 (289)
+-...++.|.|| +|||.+.+.|+...
T Consensus 4 ~g~~i~i~G~sG-sGKstl~~~l~~~~ 29 (205)
T PRK00300 4 RGLLIVLSGPSG-AGKSTLVKALLERD 29 (205)
T ss_pred CCCEEEEECCCC-CCHHHHHHHHHhhC
Confidence 345678899994 99999999985543
No 223
>PRK05973 replicative DNA helicase; Provisional
Probab=32.86 E-value=22 Score=32.44 Aligned_cols=30 Identities=13% Similarity=-0.012 Sum_probs=20.8
Q ss_pred CCCccccccccccccchhhhhcccc---hhcCCC
Q 022972 221 QPLKFAGIGGLSEFLGYTSQLCYPF---LHISYP 251 (289)
Q Consensus 221 ~~~~~~~~~G~t~~~Gkt~~l~~l~---~~~g~~ 251 (289)
.+-....++|.+| +|||.+.-.++ .+.|++
T Consensus 62 ~~Gsl~LIaG~PG-~GKT~lalqfa~~~a~~Ge~ 94 (237)
T PRK05973 62 KPGDLVLLGARPG-HGKTLLGLELAVEAMKSGRT 94 (237)
T ss_pred CCCCEEEEEeCCC-CCHHHHHHHHHHHHHhcCCe
Confidence 4556778999995 99999655442 244774
No 224
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=32.84 E-value=19 Score=32.91 Aligned_cols=23 Identities=17% Similarity=0.024 Sum_probs=19.4
Q ss_pred ccccccccchhhhhcccchhcCCC
Q 022972 228 IGGLSEFLGYTSQLCYPFLHISYP 251 (289)
Q Consensus 228 ~~G~t~~~Gkt~~l~~l~~~~g~~ 251 (289)
+.|.+ |+|||.+.+.+|+..|+|
T Consensus 26 L~G~~-GtGKT~lA~~la~~lg~~ 48 (262)
T TIGR02640 26 LRGPA-GTGKTTLAMHVARKRDRP 48 (262)
T ss_pred EEcCC-CCCHHHHHHHHHHHhCCC
Confidence 56777 499999999997777887
No 225
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=32.69 E-value=16 Score=31.04 Aligned_cols=24 Identities=13% Similarity=-0.046 Sum_probs=19.6
Q ss_pred ccccccccccccchhhhhcccchhc
Q 022972 224 KFAGIGGLSEFLGYTSQLCYPFLHI 248 (289)
Q Consensus 224 ~~~~~~G~t~~~Gkt~~l~~l~~~~ 248 (289)
++.+|.|.+| +|||++.+.|+++.
T Consensus 3 r~ivl~Gpsg-~GK~~l~~~L~~~~ 26 (183)
T PF00625_consen 3 RPIVLVGPSG-SGKSTLAKRLIQEF 26 (183)
T ss_dssp SEEEEESSTT-SSHHHHHHHHHHHS
T ss_pred CEEEEECCCC-CCHHHHHHHHHHhc
Confidence 5678899995 99999999995543
No 226
>PF02223 Thymidylate_kin: Thymidylate kinase; InterPro: IPR018094 Thymidylate kinase (2.7.4.9 from EC; dTMP kinase) catalyzes the phosphorylation of thymidine 5'-monophosphate (dTMP) to form thymidine 5'-diphosphate (dTDP) in the presence of ATP and magnesium: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate Thymidylate kinase is an ubiquitous enzyme of about 25 Kd and is important in the dTTP synthesis pathway for DNA synthesis. The function of dTMP kinase in eukaryotes comes from the study of a cell cycle mutant, cdc8, in Saccharomyces cerevisiae. Structural and functional analyses suggest that the cDNA codes for authentic human dTMP kinase. The mRNA levels and enzyme activities corresponded to cell cycle progression and cell growth stages[]. ; GO: 0004798 thymidylate kinase activity, 0005524 ATP binding, 0006233 dTDP biosynthetic process; PDB: 2PLR_B 1NMX_A 1NN0_A 2XX3_A 1NN3_A 1E9F_A 1E2Q_A 1E2D_A 1E9A_A 1E99_A ....
Probab=32.60 E-value=71 Score=26.95 Aligned_cols=49 Identities=16% Similarity=0.134 Sum_probs=30.2
Q ss_pred ccccccchhhhhcccch---hcCCC-------CcchhHHHHHHHHH--------HHHHHhhhhHHHHH
Q 022972 230 GLSEFLGYTSQLCYPFL---HISYP-------STSFSKMTYVIIHA--------MDSLYVGNLRNWWN 279 (289)
Q Consensus 230 G~t~~~Gkt~~l~~l~~---~~g~~-------~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~ 279 (289)
|.. |+|||++.+.|++ +.|+. +-.-+++.+--+|. ..+++|-+-+.++-
T Consensus 3 GiD-GsGKtT~~~~L~~~l~~~~~~~~~~~~~~~~~~g~~ir~~l~~~~~~~~~~~~~l~~a~r~~~~ 69 (186)
T PF02223_consen 3 GID-GSGKTTQIRLLAEALKEKGYKVIITFPPGSTPIGELIRELLRSESELSPEAEALLFAADRAWHL 69 (186)
T ss_dssp EST-TSSHHHHHHHHHHHHHHTTEEEEEEESSTSSHHHHHHHHHHHTSSTCGHHHHHHHHHHHHHHHH
T ss_pred CCC-CCCHHHHHHHHHHHHHHcCCcccccCCCCCChHHHHHHHHHhcccCCCHHHHHHHHHHHHHHHH
Confidence 556 5899999988732 23762 33345666666555 56666666665543
No 227
>PF02302 PTS_IIB: PTS system, Lactose/Cellobiose specific IIB subunit; InterPro: IPR003501 The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. The lactose/cellobiose-specific family are one of four structurally and functionally distinct group IIB PTS system cytoplasmic enzymes. The fold of IIB cellobiose shows similar structure to mammalian tyrosine phosphatases. This signature is often found downstream of IPR003352 from INTERPRO.; GO: 0008982 protein-N(PI)-phosphohistidine-sugar phosphotransferase activity, 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system; PDB: 1TVM_A 2WY2_D 1IIB_A 2WWV_D 1H9C_A 1E2B_A 2L2Q_A 2KYR_A 3CZC_A 3NBM_A ....
Probab=32.24 E-value=46 Score=24.63 Aligned_cols=32 Identities=19% Similarity=0.364 Sum_probs=21.4
Q ss_pred cEEEEcCCCCchHHHH-H----HHHHccCCCeeEcccc
Q 022972 174 DLIVACQKGLRSLAAC-E----LLYNAGYRNLFWVQGG 206 (289)
Q Consensus 174 ~IVvyC~~G~RS~~aa-~----~L~~~G~~nV~~L~GG 206 (289)
+|++.|.+|+.+..++ . .+.+.|++ +....+.
T Consensus 1 kIlvvC~~Gi~TS~~~~~~i~~~~~~~gi~-~~~~~~~ 37 (90)
T PF02302_consen 1 KILVVCGSGIGTSLMVANKIKKALKELGIE-VEVSAGS 37 (90)
T ss_dssp EEEEEESSSSHHHHHHHHHHHHHHHHTTEC-EEEEEEE
T ss_pred CEEEECCChHHHHHHHHHHHHHHHHhccCc-eEEEEec
Confidence 4899999999655544 4 56667875 5544444
No 228
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=32.10 E-value=20 Score=27.54 Aligned_cols=17 Identities=29% Similarity=0.069 Sum_probs=13.1
Q ss_pred ccccccccchhhhhcccc
Q 022972 228 IGGLSEFLGYTSQLCYPF 245 (289)
Q Consensus 228 ~~G~t~~~Gkt~~l~~l~ 245 (289)
+-|.. ++|||.+++.++
T Consensus 4 V~G~~-g~GKTsLi~~l~ 20 (119)
T PF08477_consen 4 VLGDS-GVGKTSLIRRLC 20 (119)
T ss_dssp EECST-TSSHHHHHHHHH
T ss_pred EECcC-CCCHHHHHHHHh
Confidence 34555 599999999993
No 229
>PRK13802 bifunctional indole-3-glycerol phosphate synthase/tryptophan synthase subunit beta; Provisional
Probab=32.06 E-value=2.4e+02 Score=29.95 Aligned_cols=89 Identities=19% Similarity=0.235 Sum_probs=57.9
Q ss_pred eCHHHHHHhhc----CCCcEEEEeCChhhhhhccCCCcEeeCCCCCcccccCCCCCccccccccCCccCCCCCCcccHHH
Q 022972 86 LTPREAGYAVQ----LSSKTLLDVRPSTERKKAWIKGSIWIPIFDIDDTFDAGSLPQKVTNFVMGGWWSGVPTLSYNKQF 161 (289)
Q Consensus 86 Is~~el~~~l~----~~~~vlIDVRs~~Ey~~ghIPGAinIP~~~~~~~~~vgtlyk~~~~~~~~a~~~g~~~~~~~~~f 161 (289)
++.+++.++++ .+=-.||-|++..|.+..-=-|+.-|-+++ +.+.....+.+-
T Consensus 144 L~~~~l~~l~~~a~~lGme~LvEvh~~~el~~a~~~ga~iiGINn-----------------------RdL~tf~vd~~~ 200 (695)
T PRK13802 144 LDDAQLKHLLDLAHELGMTVLVETHTREEIERAIAAGAKVIGINA-----------------------RNLKDLKVDVNK 200 (695)
T ss_pred cCHHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHhCCCCEEEEeC-----------------------CCCccceeCHHH
Confidence 44445554443 122478999999999865555665554433 122233344455
Q ss_pred HHHHHhcCCCCCcEEEEcCCCCchHHHHHHHHHccCCC
Q 022972 162 LSKVEEKLPKDTDLIVACQKGLRSLAACELLYNAGYRN 199 (289)
Q Consensus 162 ~~~~~~~l~k~~~IVvyC~~G~RS~~aa~~L~~~G~~n 199 (289)
..++...+|+ .+++++.+|.++..-...|...|++-
T Consensus 201 t~~L~~~ip~--~~~~VsESGI~~~~d~~~l~~~G~da 236 (695)
T PRK13802 201 YNELAADLPD--DVIKVAESGVFGAVEVEDYARAGADA 236 (695)
T ss_pred HHHHHhhCCC--CcEEEEcCCCCCHHHHHHHHHCCCCE
Confidence 5666666774 46788899999999999999999973
No 230
>smart00226 LMWPc Low molecular weight phosphatase family.
Probab=31.91 E-value=40 Score=27.29 Aligned_cols=36 Identities=19% Similarity=0.083 Sum_probs=23.3
Q ss_pred EEEEcC-CCCchHHHHHHHHHccCCCeeEccccHHHH
Q 022972 175 LIVACQ-KGLRSLAACELLYNAGYRNLFWVQGGLEAA 210 (289)
Q Consensus 175 IVvyC~-~G~RS~~aa~~L~~~G~~nV~~L~GG~~aw 210 (289)
|+++|. +-.||..+..+|+.+.=.++.+...|..+|
T Consensus 1 vLFVC~~N~cRSpmAEa~~~~~~~~~~~v~SAG~~~~ 37 (140)
T smart00226 1 ILFVCTGNICRSPMAEALFKAIVGDRVKIDSAGTGAW 37 (140)
T ss_pred CEEEeCChhhhHHHHHHHHHHhcCCCEEEEcCcccCC
Confidence 467785 344788888888775433466666676655
No 231
>PLN02422 dephospho-CoA kinase
Probab=31.88 E-value=23 Score=32.12 Aligned_cols=34 Identities=12% Similarity=0.004 Sum_probs=24.8
Q ss_pred cccccccccccchhhhhcccchhcCCC--CcchhHHHH
Q 022972 225 FAGIGGLSEFLGYTSQLCYPFLHISYP--STSFSKMTY 260 (289)
Q Consensus 225 ~~~~~G~t~~~Gkt~~l~~l~~~~g~~--~~~~~~~~~ 260 (289)
..+++|.- |+|||++.+.+ ++.|++ .+--.+|=+
T Consensus 3 ~igltG~i-gsGKstv~~~l-~~~g~~~idaD~~~~~l 38 (232)
T PLN02422 3 VVGLTGGI-ASGKSTVSNLF-KSSGIPVVDADKVARDV 38 (232)
T ss_pred EEEEECCC-CCCHHHHHHHH-HHCCCeEEehhHHHHHH
Confidence 46777777 59999999999 678997 444444433
No 232
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=31.75 E-value=18 Score=31.11 Aligned_cols=21 Identities=29% Similarity=0.071 Sum_probs=17.2
Q ss_pred ccccccccccchhhhhcccchh
Q 022972 226 AGIGGLSEFLGYTSQLCYPFLH 247 (289)
Q Consensus 226 ~~~~G~t~~~Gkt~~l~~l~~~ 247 (289)
.++.|.+ |+|||++.+.++..
T Consensus 2 igi~G~~-GsGKSTl~~~l~~~ 22 (198)
T cd02023 2 IGIAGGS-GSGKTTVAEEIIEQ 22 (198)
T ss_pred EEEECCC-CCCHHHHHHHHHHH
Confidence 5788998 49999999999443
No 233
>PRK13957 indole-3-glycerol-phosphate synthase; Provisional
Probab=31.70 E-value=2.8e+02 Score=25.48 Aligned_cols=88 Identities=20% Similarity=0.293 Sum_probs=55.9
Q ss_pred eeCHHHHHHhhc----CCCcEEEEeCChhhhhhccCCCcEeeCCCCCcccccCCCCCccccccccCCccCCCCCCcccHH
Q 022972 85 VLTPREAGYAVQ----LSSKTLLDVRPSTERKKAWIKGSIWIPIFDIDDTFDAGSLPQKVTNFVMGGWWSGVPTLSYNKQ 160 (289)
Q Consensus 85 ~Is~~el~~~l~----~~~~vlIDVRs~~Ey~~ghIPGAinIP~~~~~~~~~vgtlyk~~~~~~~~a~~~g~~~~~~~~~ 160 (289)
.++++++.++++ .+=-.+|.|++..|.+...=-|+--|-+++ +.+..+..+.+
T Consensus 134 ~L~~~~l~~l~~~a~~lGle~LVEVh~~~El~~a~~~ga~iiGINn-----------------------RdL~t~~vd~~ 190 (247)
T PRK13957 134 ILTPSQIKSFLKHASSLGMDVLVEVHTEDEAKLALDCGAEIIGINT-----------------------RDLDTFQIHQN 190 (247)
T ss_pred hCCHHHHHHHHHHHHHcCCceEEEECCHHHHHHHHhCCCCEEEEeC-----------------------CCCccceECHH
Confidence 445555555443 122478999999999876555665555443 12223344455
Q ss_pred HHHHHHhcCCCCCcEEEEcCCCCchHHHHHHHHHccCC
Q 022972 161 FLSKVEEKLPKDTDLIVACQKGLRSLAACELLYNAGYR 198 (289)
Q Consensus 161 f~~~~~~~l~k~~~IVvyC~~G~RS~~aa~~L~~~G~~ 198 (289)
-..++...+|+ .+++++.+|..+..-...++.. ++
T Consensus 191 ~~~~L~~~ip~--~~~~IsESGI~t~~d~~~l~~~-~d 225 (247)
T PRK13957 191 LVEEVAAFLPP--NIVKVGESGIESRSDLDKFRKL-VD 225 (247)
T ss_pred HHHHHHhhCCC--CcEEEEcCCCCCHHHHHHHHHh-CC
Confidence 55666666774 4577788999988878778875 76
No 234
>COG1162 Predicted GTPases [General function prediction only]
Probab=31.44 E-value=58 Score=30.87 Aligned_cols=48 Identities=23% Similarity=0.257 Sum_probs=32.7
Q ss_pred HHHHHHHccCCCeeEcc----ccHHHHHhCCCCccCCCCCccccccccccccchhhhhccc
Q 022972 188 ACELLYNAGYRNLFWVQ----GGLEAAEEEDLVREGPQPLKFAGIGGLSEFLGYTSQLCYP 244 (289)
Q Consensus 188 aa~~L~~~G~~nV~~L~----GG~~aw~~~gl~~~~~~~~~~~~~~G~t~~~Gkt~~l~~l 244 (289)
.....+..||+ ++.+. -|++..... -.-+..++.|.|| |||++++..|
T Consensus 133 ~~~~y~~~gy~-v~~~s~~~~~~~~~l~~~-------l~~~~svl~GqSG-VGKSSLiN~L 184 (301)
T COG1162 133 LLREYEDIGYP-VLFVSAKNGDGLEELAEL-------LAGKITVLLGQSG-VGKSTLINAL 184 (301)
T ss_pred HHHHHHhCCee-EEEecCcCcccHHHHHHH-------hcCCeEEEECCCC-CcHHHHHHhh
Confidence 33456678996 66554 455554432 1234678899995 9999999998
No 235
>smart00072 GuKc Guanylate kinase homologues. Active enzymes catalyze ATP-dependent phosphorylation of GMP to GDP. Structure resembles that of adenylate kinase. So-called membrane-associated guanylate kinase homologues (MAGUKs) do not possess guanylate kinase activities; instead at least some possess protein-binding functions.
Probab=31.36 E-value=15 Score=31.41 Aligned_cols=23 Identities=17% Similarity=0.120 Sum_probs=18.7
Q ss_pred ccccccccccccchhhhhcccchh
Q 022972 224 KFAGIGGLSEFLGYTSQLCYPFLH 247 (289)
Q Consensus 224 ~~~~~~G~t~~~Gkt~~l~~l~~~ 247 (289)
+..++.|.+| +||+++.+.|+++
T Consensus 3 r~ivl~Gpsg-~GK~tl~~~L~~~ 25 (184)
T smart00072 3 RPIVLSGPSG-VGKGTLLAELIQE 25 (184)
T ss_pred cEEEEECCCC-CCHHHHHHHHHhc
Confidence 4567889994 9999999999444
No 236
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=31.33 E-value=13 Score=33.82 Aligned_cols=42 Identities=26% Similarity=0.073 Sum_probs=25.9
Q ss_pred CeeEccccHHHHHhCCCCccCCCCCccccccccccccchhhhhccc
Q 022972 199 NLFWVQGGLEAAEEEDLVREGPQPLKFAGIGGLSEFLGYTSQLCYP 244 (289)
Q Consensus 199 nV~~L~GG~~aw~~~gl~~~~~~~~~~~~~~G~t~~~Gkt~~l~~l 244 (289)
|+..-.|+.+..+.-++.+. .-...++.|.|| +|||++||-+
T Consensus 7 ~l~K~fg~~~VLkgi~l~v~---~Gevv~iiGpSG-SGKSTlLRcl 48 (240)
T COG1126 7 NLSKSFGDKEVLKGISLSVE---KGEVVVIIGPSG-SGKSTLLRCL 48 (240)
T ss_pred eeeEEeCCeEEecCcceeEc---CCCEEEEECCCC-CCHHHHHHHH
Confidence 33333444444433444443 445567888884 9999999987
No 237
>PRK11545 gntK gluconate kinase 1; Provisional
Probab=31.32 E-value=20 Score=30.22 Aligned_cols=21 Identities=14% Similarity=0.018 Sum_probs=16.8
Q ss_pred ccccccchhhhhcccchhcCCC
Q 022972 230 GLSEFLGYTSQLCYPFLHISYP 251 (289)
Q Consensus 230 G~t~~~Gkt~~l~~l~~~~g~~ 251 (289)
|.+ |.|||++++.|+...|.+
T Consensus 2 G~s-GsGKSTla~~la~~l~~~ 22 (163)
T PRK11545 2 GVS-GSGKSAVASEVAHQLHAA 22 (163)
T ss_pred CCC-CCcHHHHHHHHHHHhCCe
Confidence 677 489999999997776764
No 238
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=31.07 E-value=1.6e+02 Score=23.42 Aligned_cols=47 Identities=21% Similarity=0.232 Sum_probs=31.2
Q ss_pred ccHHHHHHHHhcCCCCCcEEEEcCCCC----chHHHHHHHHHccCCCeeEcccc
Q 022972 157 YNKQFLSKVEEKLPKDTDLIVACQKGL----RSLAACELLYNAGYRNLFWVQGG 206 (289)
Q Consensus 157 ~~~~f~~~~~~~l~k~~~IVvyC~~G~----RS~~aa~~L~~~G~~nV~~L~GG 206 (289)
+.+++.+.+.+. +..+|++|..-. ........|++.|++++.++-||
T Consensus 38 p~e~~~~~a~~~---~~d~V~iS~~~~~~~~~~~~~~~~L~~~~~~~i~i~~GG 88 (122)
T cd02071 38 TPEEIVEAAIQE---DVDVIGLSSLSGGHMTLFPEVIELLRELGAGDILVVGGG 88 (122)
T ss_pred CHHHHHHHHHHc---CCCEEEEcccchhhHHHHHHHHHHHHhcCCCCCEEEEEC
Confidence 445666666532 346888885322 24556778889999888888887
No 239
>COG0283 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=30.97 E-value=41 Score=30.46 Aligned_cols=39 Identities=10% Similarity=0.014 Sum_probs=28.3
Q ss_pred cccccccccccchhhhhcccchhcCCC--CcchhHHHHHHHH
Q 022972 225 FAGIGGLSEFLGYTSQLCYPFLHISYP--STSFSKMTYVIIH 264 (289)
Q Consensus 225 ~~~~~G~t~~~Gkt~~l~~l~~~~g~~--~~~~~~~~~~~~~ 264 (289)
...|-|.+ ++||.++-+.+|++.||+ ..-..=|.++..+
T Consensus 6 ~IAIDGPa-gsGKsTvak~lA~~Lg~~yldTGamYRa~a~~~ 46 (222)
T COG0283 6 IIAIDGPA-GSGKSTVAKILAEKLGFHYLDTGAMYRAVALAA 46 (222)
T ss_pred EEEEeCCC-ccChHHHHHHHHHHhCCCeecccHHHHHHHHHH
Confidence 34677898 499999999999999997 3333445555443
No 240
>PRK12338 hypothetical protein; Provisional
Probab=30.95 E-value=22 Score=33.96 Aligned_cols=27 Identities=15% Similarity=0.050 Sum_probs=23.1
Q ss_pred ccccccccccccchhhhhcccchhcCCC
Q 022972 224 KFAGIGGLSEFLGYTSQLCYPFLHISYP 251 (289)
Q Consensus 224 ~~~~~~G~t~~~Gkt~~l~~l~~~~g~~ 251 (289)
....++|.+| +|||.+-+.||+..|++
T Consensus 5 ~ii~i~G~sG-sGKST~a~~la~~l~~~ 31 (319)
T PRK12338 5 YVILIGSASG-IGKSTIASELARTLNIK 31 (319)
T ss_pred EEEEEECCCC-CCHHHHHHHHHHHCCCe
Confidence 4668899994 99999999997777986
No 241
>PRK08349 hypothetical protein; Validated
Probab=30.89 E-value=62 Score=28.05 Aligned_cols=27 Identities=19% Similarity=0.336 Sum_probs=23.2
Q ss_pred cEEEEcCCCCchHHHHHHHHHccCCCee
Q 022972 174 DLIVACQKGLRSLAACELLYNAGYRNLF 201 (289)
Q Consensus 174 ~IVvyC~~G~RS~~aa~~L~~~G~~nV~ 201 (289)
++|+.+.||..|..+++.|.+.|++ |.
T Consensus 2 ~~vvllSGG~DS~v~~~~l~~~g~~-v~ 28 (198)
T PRK08349 2 KAVALLSSGIDSPVAIYLMLRRGVE-VY 28 (198)
T ss_pred cEEEEccCChhHHHHHHHHHHcCCe-EE
Confidence 4677889999999999999999995 65
No 242
>TIGR00682 lpxK tetraacyldisaccharide 4'-kinase. Also called lipid-A 4'-kinase. This essential gene encodes an enzyme in the pathway of lipid A biosynthesis in Gram-negative organisms. A single copy of this protein is found in Gram-negative bacteria. PSI-BLAST converges on this set of apparent orthologs without identifying any other homologs.
Probab=30.67 E-value=22 Score=33.72 Aligned_cols=26 Identities=23% Similarity=0.229 Sum_probs=20.0
Q ss_pred CCCccccccccc-cccchhhhhcccch
Q 022972 221 QPLKFAGIGGLS-EFLGYTSQLCYPFL 246 (289)
Q Consensus 221 ~~~~~~~~~G~t-~~~Gkt~~l~~l~~ 246 (289)
.+.....+|..| ||.|||-+...|++
T Consensus 26 ~~vPVIsVGNitvGGTGKTP~v~~La~ 52 (311)
T TIGR00682 26 APVPVVIVGNLSVGGTGKTPVVVWLAE 52 (311)
T ss_pred CCCCEEEEeccccCCcChHHHHHHHHH
Confidence 466677888888 89999988777643
No 243
>PRK03333 coaE dephospho-CoA kinase/protein folding accessory domain-containing protein; Provisional
Probab=30.52 E-value=21 Score=34.83 Aligned_cols=25 Identities=12% Similarity=-0.025 Sum_probs=20.8
Q ss_pred cccccccccccchhhhhcccchhcCCC
Q 022972 225 FAGIGGLSEFLGYTSQLCYPFLHISYP 251 (289)
Q Consensus 225 ~~~~~G~t~~~Gkt~~l~~l~~~~g~~ 251 (289)
..+++|.. |+|||++.+.| ++.|+|
T Consensus 3 ~IgltG~i-gsGKStv~~~L-~~~G~~ 27 (395)
T PRK03333 3 RIGLTGGI-GAGKSTVAARL-AELGAV 27 (395)
T ss_pred EEEEECCC-CCCHHHHHHHH-HHCCCe
Confidence 35777877 59999999999 678996
No 244
>PLN02460 indole-3-glycerol-phosphate synthase
Probab=30.52 E-value=3.7e+02 Score=25.96 Aligned_cols=91 Identities=22% Similarity=0.304 Sum_probs=54.7
Q ss_pred eeCHHHHHHhhc----CCCcEEEEeCChhhhhhccC-CCcEeeCCCCCcccccCCCCCccccccccCCccCCCCCCcccH
Q 022972 85 VLTPREAGYAVQ----LSSKTLLDVRPSTERKKAWI-KGSIWIPIFDIDDTFDAGSLPQKVTNFVMGGWWSGVPTLSYNK 159 (289)
Q Consensus 85 ~Is~~el~~~l~----~~~~vlIDVRs~~Ey~~ghI-PGAinIP~~~~~~~~~vgtlyk~~~~~~~~a~~~g~~~~~~~~ 159 (289)
.++++++.++++ .+=-++|-|++..|.+..-= .|+--|-+++ +.+..+..+.
T Consensus 213 iL~~~~L~~l~~~A~~LGme~LVEVH~~~ElerAl~~~ga~iIGINN-----------------------RdL~Tf~vDl 269 (338)
T PLN02460 213 VLPDLDIKYMLKICKSLGMAALIEVHDEREMDRVLGIEGVELIGINN-----------------------RSLETFEVDI 269 (338)
T ss_pred hCCHHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHhcCCCCEEEEeC-----------------------CCCCcceECH
Confidence 344445544443 12248999999999976433 3665554443 1122223333
Q ss_pred HHHHHHHh-----cCCCCCcEEEEcCCCCchHHHHHHHHHccCCC
Q 022972 160 QFLSKVEE-----KLPKDTDLIVACQKGLRSLAACELLYNAGYRN 199 (289)
Q Consensus 160 ~f~~~~~~-----~l~k~~~IVvyC~~G~RS~~aa~~L~~~G~~n 199 (289)
+-..++.. .+++ +.+++++.+|..+..-...|...|++-
T Consensus 270 ~~t~~L~~~~~~~~i~~-~~~~~VsESGI~t~~Dv~~l~~~GadA 313 (338)
T PLN02460 270 SNTKKLLEGERGEQIRE-KGIIVVGESGLFTPDDVAYVQNAGVKA 313 (338)
T ss_pred HHHHHHhhhccccccCC-CCeEEEECCCCCCHHHHHHHHHCCCCE
Confidence 33344443 3432 357888899999999999999999973
No 245
>COG1737 RpiR Transcriptional regulators [Transcription]
Probab=30.49 E-value=1.4e+02 Score=27.44 Aligned_cols=51 Identities=16% Similarity=0.117 Sum_probs=31.2
Q ss_pred HHHHHHHHhcCCCCCcEEEEcC--CCCchHHHHHHHHHccCCCeeEccccHHHH
Q 022972 159 KQFLSKVEEKLPKDTDLIVACQ--KGLRSLAACELLYNAGYRNLFWVQGGLEAA 210 (289)
Q Consensus 159 ~~f~~~~~~~l~k~~~IVvyC~--~G~RS~~aa~~L~~~G~~nV~~L~GG~~aw 210 (289)
++-+.++.+.+.+-+.|++|.- ++.-+..+...|.+.|.+ +..+.+....|
T Consensus 117 ~~~l~~av~~L~~A~rI~~~G~g~S~~vA~~~~~~l~~ig~~-~~~~~d~~~~~ 169 (281)
T COG1737 117 EEALERAVELLAKARRIYFFGLGSSGLVASDLAYKLMRIGLN-VVALSDTHGQL 169 (281)
T ss_pred HHHHHHHHHHHHcCCeEEEEEechhHHHHHHHHHHHHHcCCc-eeEecchHHHH
Confidence 3444555545666667777772 222355667788899995 76666554444
No 246
>COG0560 SerB Phosphoserine phosphatase [Amino acid transport and metabolism]
Probab=30.21 E-value=55 Score=29.06 Aligned_cols=66 Identities=17% Similarity=0.189 Sum_probs=40.9
Q ss_pred hHHHHHHHHHccCCCeeEccccHHHHHhC-----CCCccCCCCCcc--ccccc-----cccccchhhhhcccchhcCCC
Q 022972 185 SLAACELLYNAGYRNLFWVQGGLEAAEEE-----DLVREGPQPLKF--AGIGG-----LSEFLGYTSQLCYPFLHISYP 251 (289)
Q Consensus 185 S~~aa~~L~~~G~~nV~~L~GG~~aw~~~-----gl~~~~~~~~~~--~~~~G-----~t~~~Gkt~~l~~l~~~~g~~ 251 (289)
+..+...++..|++ |.++.||+.-+.+. |+...-...... ..++| ...+-+|-+.+++++++.|++
T Consensus 82 a~elv~~lk~~G~~-v~iiSgg~~~lv~~ia~~lg~d~~~an~l~~~dG~ltG~v~g~~~~~~~K~~~l~~~~~~~g~~ 159 (212)
T COG0560 82 AEELVAALKAAGAK-VVIISGGFTFLVEPIAERLGIDYVVANELEIDDGKLTGRVVGPICDGEGKAKALRELAAELGIP 159 (212)
T ss_pred HHHHHHHHHHCCCE-EEEEcCChHHHHHHHHHHhCCchheeeEEEEeCCEEeceeeeeecCcchHHHHHHHHHHHcCCC
Confidence 66788888888986 88888988866552 332221000000 02344 222347999999997888986
No 247
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=30.18 E-value=20 Score=25.79 Aligned_cols=19 Identities=21% Similarity=0.062 Sum_probs=16.6
Q ss_pred cccccccccccchhhhhccc
Q 022972 225 FAGIGGLSEFLGYTSQLCYP 244 (289)
Q Consensus 225 ~~~~~G~t~~~Gkt~~l~~l 244 (289)
...++|.+| +|||.++.++
T Consensus 25 ~tli~G~nG-sGKSTllDAi 43 (62)
T PF13555_consen 25 VTLITGPNG-SGKSTLLDAI 43 (62)
T ss_pred EEEEECCCC-CCHHHHHHHH
Confidence 578999995 9999999887
No 248
>PRK13104 secA preprotein translocase subunit SecA; Reviewed
Probab=30.11 E-value=61 Score=35.23 Aligned_cols=52 Identities=13% Similarity=0.073 Sum_probs=41.4
Q ss_pred HHHHHHHhcCCCCCcEEEEcCCCCchHHHHHHHHHccCCCeeEccccHHHHHh
Q 022972 160 QFLSKVEEKLPKDTDLIVACQKGLRSLAACELLYNAGYRNLFWVQGGLEAAEE 212 (289)
Q Consensus 160 ~f~~~~~~~l~k~~~IVvyC~~G~RS~~aa~~L~~~G~~nV~~L~GG~~aw~~ 212 (289)
...+++.+...+++|++|.|.+-..|..++..|.+.|++ ...|.+.......
T Consensus 432 av~~~i~~~~~~g~PVLVgt~Sie~sE~ls~~L~~~gi~-h~vLnak~~q~Ea 483 (896)
T PRK13104 432 AIIEDVRECGVRKQPVLVGTVSIEASEFLSQLLKKENIK-HQVLNAKFHEKEA 483 (896)
T ss_pred HHHHHHHHHHhCCCCEEEEeCcHHHHHHHHHHHHHcCCC-eEeecCCCChHHH
Confidence 344444444578899999999988899999999999997 7789888776544
No 249
>PRK03846 adenylylsulfate kinase; Provisional
Probab=29.91 E-value=24 Score=30.56 Aligned_cols=25 Identities=16% Similarity=-0.205 Sum_probs=19.8
Q ss_pred CCccccccccccccchhhhhcccchh
Q 022972 222 PLKFAGIGGLSEFLGYTSQLCYPFLH 247 (289)
Q Consensus 222 ~~~~~~~~G~t~~~Gkt~~l~~l~~~ 247 (289)
.....+++|.+ |+|||++.+.|+..
T Consensus 23 ~~~~i~i~G~~-GsGKSTla~~l~~~ 47 (198)
T PRK03846 23 KGVVLWFTGLS-GSGKSTVAGALEEA 47 (198)
T ss_pred CCEEEEEECCC-CCCHHHHHHHHHHH
Confidence 44577888998 59999999998443
No 250
>PRK00889 adenylylsulfate kinase; Provisional
Probab=29.88 E-value=23 Score=29.77 Aligned_cols=24 Identities=21% Similarity=-0.099 Sum_probs=18.9
Q ss_pred Cccccccccccccchhhhhcccchh
Q 022972 223 LKFAGIGGLSEFLGYTSQLCYPFLH 247 (289)
Q Consensus 223 ~~~~~~~G~t~~~Gkt~~l~~l~~~ 247 (289)
-...+++|..| +|||++.+.|++.
T Consensus 4 g~~i~~~G~~G-sGKST~a~~la~~ 27 (175)
T PRK00889 4 GVTVWFTGLSG-AGKTTIARALAEK 27 (175)
T ss_pred CeEEEEECCCC-CCHHHHHHHHHHH
Confidence 34678889984 9999999988544
No 251
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=29.79 E-value=26 Score=32.14 Aligned_cols=27 Identities=15% Similarity=-0.069 Sum_probs=21.7
Q ss_pred ccccccccccccchhhhhcccchhcCCC
Q 022972 224 KFAGIGGLSEFLGYTSQLCYPFLHISYP 251 (289)
Q Consensus 224 ~~~~~~G~t~~~Gkt~~l~~l~~~~g~~ 251 (289)
....++|.. |+|||.+.+.+|.+.+.+
T Consensus 31 ~~~ll~Gp~-G~GKT~la~~ia~~~~~~ 57 (305)
T TIGR00635 31 DHLLLYGPP-GLGKTTLAHIIANEMGVN 57 (305)
T ss_pred CeEEEECCC-CCCHHHHHHHHHHHhCCC
Confidence 346789999 499999999997776765
No 252
>PF10443 RNA12: RNA12 protein; InterPro: IPR018850 Mitochondrial escape protein 2 (also known as RNA12) plays a role in maintaining the mitochondrial genome and in controlling mtDNA escape [, ]. It is also involved in the regulation of mtDNA nucleotide structure and number []. Additionally, this protein have a dispensable role in the early maturation of pre-rRNA [].
Probab=29.79 E-value=36 Score=33.88 Aligned_cols=56 Identities=23% Similarity=0.177 Sum_probs=37.2
Q ss_pred HHHHHhCCCCccCCCCCccccccccccccchhhhh-----------------------------cccchhcCCCCcchhH
Q 022972 207 LEAAEEEDLVREGPQPLKFAGIGGLSEFLGYTSQL-----------------------------CYPFLHISYPSTSFSK 257 (289)
Q Consensus 207 ~~aw~~~gl~~~~~~~~~~~~~~G~t~~~Gkt~~l-----------------------------~~l~~~~g~~~~~~~~ 257 (289)
++.|..+ .+-+|.+++|.- |+||+++. +.+|.+-|| +++|+-
T Consensus 8 L~~wL~e-------~~~TFIvV~GPr-GSGK~elV~d~~L~~r~~vL~IDC~~i~~ar~D~~~I~~lA~qvGY-~PvFsw 78 (431)
T PF10443_consen 8 LKSWLNE-------NPNTFIVVQGPR-GSGKRELVMDHVLKDRKNVLVIDCDQIVKARGDAAFIKNLASQVGY-FPVFSW 78 (431)
T ss_pred HHHHHhc-------CCCeEEEEECCC-CCCccHHHHHHHHhCCCCEEEEEChHhhhccChHHHHHHHHHhcCC-CcchHH
Confidence 4566543 456899999998 59999988 234444588 888764
Q ss_pred HHHHHHHHHHHHHhh
Q 022972 258 MTYVIIHAMDSLYVG 272 (289)
Q Consensus 258 ~~~~~~~~~~~~~~~ 272 (289)
. --+-=++|++.-|
T Consensus 79 ~-nSiss~IDLa~qG 92 (431)
T PF10443_consen 79 M-NSISSFIDLAVQG 92 (431)
T ss_pred H-HHHHHHHHHHHhh
Confidence 3 2334456766654
No 253
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=29.67 E-value=53 Score=34.30 Aligned_cols=50 Identities=12% Similarity=0.292 Sum_probs=40.6
Q ss_pred cHHHHHHHHhcCCCCCcEEEEcCCCCchHHHHHHHHHccCCCeeEccccHH
Q 022972 158 NKQFLSKVEEKLPKDTDLIVACQKGLRSLAACELLYNAGYRNLFWVQGGLE 208 (289)
Q Consensus 158 ~~~f~~~~~~~l~k~~~IVvyC~~G~RS~~aa~~L~~~G~~nV~~L~GG~~ 208 (289)
.+.+++++.....++.+++|+|++-.++..++..|...|++ +..+.|++.
T Consensus 432 ~~~L~~~L~~~~~~g~~viIf~~t~~~ae~L~~~L~~~gi~-~~~~h~~~~ 481 (652)
T PRK05298 432 VDDLLSEIRKRVAKGERVLVTTLTKRMAEDLTDYLKELGIK-VRYLHSDID 481 (652)
T ss_pred HHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHhhccee-EEEEECCCC
Confidence 45677777766667788999999888899999999999995 777777755
No 254
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=29.40 E-value=23 Score=31.47 Aligned_cols=24 Identities=25% Similarity=-0.111 Sum_probs=18.1
Q ss_pred Cccccccccccccchhhhhcccchh
Q 022972 223 LKFAGIGGLSEFLGYTSQLCYPFLH 247 (289)
Q Consensus 223 ~~~~~~~G~t~~~Gkt~~l~~l~~~ 247 (289)
.....++|.+ |+|||.+|+.++.+
T Consensus 34 ~~~l~l~G~~-G~GKTHLL~Ai~~~ 57 (219)
T PF00308_consen 34 YNPLFLYGPS-GLGKTHLLQAIANE 57 (219)
T ss_dssp SSEEEEEEST-TSSHHHHHHHHHHH
T ss_pred CCceEEECCC-CCCHHHHHHHHHHH
Confidence 3445688888 49999999998443
No 255
>TIGR01672 AphA HAD superfamily (subfamily IIIB) phosphatase, TIGR01672. Supporting evidence for the inclusion in the HAD superfamily, whose phosphatase members are magnesium dependent, is the inhibition by EDTA and calcium ions, and stimulation by magnesium ion.
Probab=29.36 E-value=1.3e+02 Score=27.41 Aligned_cols=27 Identities=4% Similarity=0.124 Sum_probs=20.6
Q ss_pred CCCcceeCHHHHHHhhcCCC--cEEEEeC
Q 022972 80 DGKVKVLTPREAGYAVQLSS--KTLLDVR 106 (289)
Q Consensus 80 ~~~~~~Is~~el~~~l~~~~--~vlIDVR 106 (289)
...++-||.+|..+.+.... .+++|+-
T Consensus 43 ~~~~~~~~~~~~~~~~~~~~p~aViFDlD 71 (237)
T TIGR01672 43 QAPIHWISVAQIENSLEGRPPIAVSFDID 71 (237)
T ss_pred cCCeeEEEHHHHHHhcCCCCCeEEEEeCC
Confidence 35688999999998886443 6778876
No 256
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=29.32 E-value=26 Score=28.97 Aligned_cols=40 Identities=10% Similarity=-0.043 Sum_probs=24.3
Q ss_pred ccccHHHHHhCCCCccCCCCCccccccccccccchhhhhcccchh
Q 022972 203 VQGGLEAAEEEDLVREGPQPLKFAGIGGLSEFLGYTSQLCYPFLH 247 (289)
Q Consensus 203 L~GG~~aw~~~gl~~~~~~~~~~~~~~G~t~~~Gkt~~l~~l~~~ 247 (289)
+-..+++|.+..-| ...-....+|.|| +|||.+-+-+|+.
T Consensus 37 v~~ai~~~l~~~~p----~KpLVlSfHG~tG-tGKn~v~~liA~~ 76 (127)
T PF06309_consen 37 VVNAIKGHLANPNP----RKPLVLSFHGWTG-TGKNFVSRLIAEH 76 (127)
T ss_pred HHHHHHHHHcCCCC----CCCEEEEeecCCC-CcHHHHHHHHHHH
Confidence 34455666543211 1222335889994 9999999998544
No 257
>PRK14528 adenylate kinase; Provisional
Probab=29.29 E-value=23 Score=30.43 Aligned_cols=25 Identities=20% Similarity=0.002 Sum_probs=20.3
Q ss_pred ccccccccccchhhhhcccchhcCCC
Q 022972 226 AGIGGLSEFLGYTSQLCYPFLHISYP 251 (289)
Q Consensus 226 ~~~~G~t~~~Gkt~~l~~l~~~~g~~ 251 (289)
..+.|.. |+|||++.+.++++-|++
T Consensus 4 i~i~G~p-GsGKtt~a~~la~~~~~~ 28 (186)
T PRK14528 4 IIFMGPP-GAGKGTQAKILCERLSIP 28 (186)
T ss_pred EEEECCC-CCCHHHHHHHHHHHhCCC
Confidence 4566777 599999999997777886
No 258
>PF03162 Y_phosphatase2: Tyrosine phosphatase family; InterPro: IPR004861 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry represents protein-tyrosine phosphatases predominantly from fungi, plants and bacteria, several of which are putative enzymes. These proteins are closely related to the Y-phosphatase and DSPc families. This entry includes the PTPase SIW14 from Saccharomyces cerevisiae (Baker's yeast), which plays a role in actin filament organisation and endocytosis.; PDB: 2Q47_A 1XRI_A.
Probab=29.23 E-value=54 Score=28.00 Aligned_cols=41 Identities=17% Similarity=0.372 Sum_probs=23.8
Q ss_pred cHHHHHHHHhc-CC-CCCcEEEEcCCCC-chHHHHHHHHH-ccCC
Q 022972 158 NKQFLSKVEEK-LP-KDTDLIVACQKGL-RSLAACELLYN-AGYR 198 (289)
Q Consensus 158 ~~~f~~~~~~~-l~-k~~~IVvyC~~G~-RS~~aa~~L~~-~G~~ 198 (289)
.++.+.++.+. ++ .+.||+|+|..|. |...+...|++ .|++
T Consensus 75 ~~~~v~~aL~~ild~~n~PvLiHC~~G~~rTG~vvg~lRk~Q~W~ 119 (164)
T PF03162_consen 75 SEEQVAEALEIILDPRNYPVLIHCNHGKDRTGLVVGCLRKLQGWS 119 (164)
T ss_dssp -HHHHHHHHHHHH-GGG-SEEEE-SSSSSHHHHHHHHHHHHTTB-
T ss_pred CHHHHHHHHHHHhCCCCCCEEEEeCCCCcchhhHHHHHHHHcCCC
Confidence 44555554433 33 5679999997665 88888887776 3553
No 259
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=29.11 E-value=21 Score=31.20 Aligned_cols=22 Identities=23% Similarity=0.187 Sum_probs=17.5
Q ss_pred ccccccccccchhhhhcccchhc
Q 022972 226 AGIGGLSEFLGYTSQLCYPFLHI 248 (289)
Q Consensus 226 ~~~~G~t~~~Gkt~~l~~l~~~~ 248 (289)
.++.|.+ |+|||++.+.|++..
T Consensus 2 i~i~G~s-gsGKTtla~~l~~~~ 23 (187)
T cd02024 2 VGISGVT-NSGKTTLAKLLQRIL 23 (187)
T ss_pred EEEECCC-CCCHHHHHHHHHHHc
Confidence 4678888 499999999995543
No 260
>PRK06893 DNA replication initiation factor; Validated
Probab=29.08 E-value=21 Score=31.83 Aligned_cols=23 Identities=26% Similarity=0.033 Sum_probs=18.0
Q ss_pred ccccccccccccchhhhhcccchh
Q 022972 224 KFAGIGGLSEFLGYTSQLCYPFLH 247 (289)
Q Consensus 224 ~~~~~~G~t~~~Gkt~~l~~l~~~ 247 (289)
....++|.+| +|||.+++.++.+
T Consensus 40 ~~l~l~G~~G-~GKThL~~ai~~~ 62 (229)
T PRK06893 40 PFFYIWGGKS-SGKSHLLKAVSNH 62 (229)
T ss_pred CeEEEECCCC-CCHHHHHHHHHHH
Confidence 3457888884 9999999998544
No 261
>cd05567 PTS_IIB_mannitol PTS_IIB_mannitol: subunit IIB of enzyme II (EII) of the mannitol-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In this system, EII is a mannitol-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIA, IIB, and IIC domains are expressed from the mtlA gene as a single protein, also known as the mannitol PTS permease, the mtl transporter, or MtlA. MtlA is only functional as a dimer with the dimer contacts occuring between the IIC domains. MtlA takes up exogenous mannitol releasing the phosphate ester into the cytoplasm in preparation for oxidation to fructose-6-phosphate by the NAD-dependent mannitol-P dehydrogenase (MtlD). The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include mannitol, chitobiose/lichenan, ascorbate, lactose, galactitol, fructose, and a s
Probab=28.96 E-value=66 Score=24.07 Aligned_cols=36 Identities=22% Similarity=0.410 Sum_probs=21.6
Q ss_pred cEEEEcCCCCchHHH-HH----HHHHccCCCeeEccccHHHH
Q 022972 174 DLIVACQKGLRSLAA-CE----LLYNAGYRNLFWVQGGLEAA 210 (289)
Q Consensus 174 ~IVvyC~~G~RS~~a-a~----~L~~~G~~nV~~L~GG~~aw 210 (289)
+++++|.+|+-+..+ +. .+...|.. ...-..++...
T Consensus 2 kilvvCg~G~gtS~ml~~ki~~~~~~~~~~-~~v~~~~~~~~ 42 (87)
T cd05567 2 KIVFACDAGMGSSAMGASVLRKKLKKAGLE-IPVTNSAIDEL 42 (87)
T ss_pred EEEEECCCCccHHHHHHHHHHHHHHHCCCc-eEEEEcchhhC
Confidence 689999999865443 43 45556664 33444455444
No 262
>PRK14531 adenylate kinase; Provisional
Probab=28.95 E-value=24 Score=30.15 Aligned_cols=25 Identities=12% Similarity=-0.176 Sum_probs=20.6
Q ss_pred ccccccccccchhhhhcccchhcCCC
Q 022972 226 AGIGGLSEFLGYTSQLCYPFLHISYP 251 (289)
Q Consensus 226 ~~~~G~t~~~Gkt~~l~~l~~~~g~~ 251 (289)
..+.|.. |+|||++-+.||++-|++
T Consensus 5 i~i~G~p-GsGKsT~~~~la~~~g~~ 29 (183)
T PRK14531 5 LLFLGPP-GAGKGTQAARLCAAHGLR 29 (183)
T ss_pred EEEECCC-CCCHHHHHHHHHHHhCCC
Confidence 4566777 599999999998887987
No 263
>TIGR01587 cas3_core CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.
Probab=28.93 E-value=74 Score=29.81 Aligned_cols=50 Identities=10% Similarity=0.116 Sum_probs=37.5
Q ss_pred HHHHHHHhcCCCCCcEEEEcCCCCchHHHHHHHHHccCC-CeeEccccHHH
Q 022972 160 QFLSKVEEKLPKDTDLIVACQKGLRSLAACELLYNAGYR-NLFWVQGGLEA 209 (289)
Q Consensus 160 ~f~~~~~~~l~k~~~IVvyC~~G~RS~~aa~~L~~~G~~-nV~~L~GG~~a 209 (289)
+.+.++.....++.+++|+|++-.++..++..|+..+.+ ++..+.|++..
T Consensus 210 ~~l~~l~~~~~~~~~~lVf~~t~~~~~~~~~~L~~~~~~~~~~~~h~~~~~ 260 (358)
T TIGR01587 210 SSLERLLEFIKKGGKIAIIVNTVDRAQEFYQQLKENAPEEEIMLLHSRFTE 260 (358)
T ss_pred HHHHHHHHHhhCCCeEEEEECCHHHHHHHHHHHHhhcCCCeEEEEECCCCH
Confidence 344444444556778999999877888999999988874 58899998743
No 264
>PRK04195 replication factor C large subunit; Provisional
Probab=28.60 E-value=29 Score=34.66 Aligned_cols=28 Identities=18% Similarity=-0.037 Sum_probs=23.9
Q ss_pred CccccccccccccchhhhhcccchhcCCC
Q 022972 223 LKFAGIGGLSEFLGYTSQLCYPFLHISYP 251 (289)
Q Consensus 223 ~~~~~~~G~t~~~Gkt~~l~~l~~~~g~~ 251 (289)
.+...++|..| +|||.+.+.+|++.|++
T Consensus 39 ~~~lLL~GppG-~GKTtla~ala~el~~~ 66 (482)
T PRK04195 39 KKALLLYGPPG-VGKTSLAHALANDYGWE 66 (482)
T ss_pred CCeEEEECCCC-CCHHHHHHHHHHHcCCC
Confidence 46678899995 99999999998888886
No 265
>PRK00103 rRNA large subunit methyltransferase; Provisional
Probab=28.55 E-value=1.8e+02 Score=24.73 Aligned_cols=48 Identities=23% Similarity=0.335 Sum_probs=32.4
Q ss_pred HHHHhcCCCCCcEEEEcCCCC--chHHHHHHHHHc---cCCCeeEccccHHHH
Q 022972 163 SKVEEKLPKDTDLIVACQKGL--RSLAACELLYNA---GYRNLFWVQGGLEAA 210 (289)
Q Consensus 163 ~~~~~~l~k~~~IVvyC~~G~--RS~~aa~~L~~~---G~~nV~~L~GG~~aw 210 (289)
+.+.+.++++.-+|+.|..|. .|...|..+.+. |..++..+-||-.+.
T Consensus 58 ~~il~~l~~~~~~i~LDe~Gk~~sS~~fA~~l~~~~~~g~~~i~F~IGGa~G~ 110 (157)
T PRK00103 58 ERILAALPKGARVIALDERGKQLSSEEFAQELERWRDDGRSDVAFVIGGADGL 110 (157)
T ss_pred HHHHhhCCCCCEEEEEcCCCCcCCHHHHHHHHHHHHhcCCccEEEEEcCcccc
Confidence 344455776666777776665 688888888764 545677777875443
No 266
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=28.45 E-value=41 Score=33.58 Aligned_cols=27 Identities=19% Similarity=-0.038 Sum_probs=21.9
Q ss_pred ccccccccccccchhhhhcccchhcCCC
Q 022972 224 KFAGIGGLSEFLGYTSQLCYPFLHISYP 251 (289)
Q Consensus 224 ~~~~~~G~t~~~Gkt~~l~~l~~~~g~~ 251 (289)
.-..+.|.|| +|||.+.|.||+..+.|
T Consensus 51 ~~ILliGp~G-~GKT~LAr~LAk~l~~~ 77 (443)
T PRK05201 51 KNILMIGPTG-VGKTEIARRLAKLANAP 77 (443)
T ss_pred ceEEEECCCC-CCHHHHHHHHHHHhCCh
Confidence 3457888994 99999999997776776
No 267
>PRK00652 lpxK tetraacyldisaccharide 4'-kinase; Reviewed
Probab=28.01 E-value=26 Score=33.45 Aligned_cols=30 Identities=13% Similarity=0.068 Sum_probs=21.2
Q ss_pred CCCccccccccc-cccchhhhhcccch---hcCC
Q 022972 221 QPLKFAGIGGLS-EFLGYTSQLCYPFL---HISY 250 (289)
Q Consensus 221 ~~~~~~~~~G~t-~~~Gkt~~l~~l~~---~~g~ 250 (289)
.+.....+|..| ||+|||-+...|++ ++|+
T Consensus 47 ~~~pvIsVGNi~vGGtGKTP~v~~L~~~l~~~g~ 80 (325)
T PRK00652 47 APVPVIVVGNITVGGTGKTPVVIALAEQLQARGL 80 (325)
T ss_pred CCCCEEEEcCeeCCCCChHHHHHHHHHHHHHCCC
Confidence 355677787776 78999998777644 3455
No 268
>PRK08099 bifunctional DNA-binding transcriptional repressor/ NMN adenylyltransferase; Provisional
Probab=27.96 E-value=22 Score=34.78 Aligned_cols=38 Identities=13% Similarity=-0.095 Sum_probs=26.4
Q ss_pred CCccccccccccccchhhhhcccchhcCCCCcchhHHHH
Q 022972 222 PLKFAGIGGLSEFLGYTSQLCYPFLHISYPSTSFSKMTY 260 (289)
Q Consensus 222 ~~~~~~~~G~t~~~Gkt~~l~~l~~~~g~~~~~~~~~~~ 260 (289)
-....++.|.+ ++|||++.+.||+.-|++-+.-.+|-.
T Consensus 218 ~~~~IvI~G~~-gsGKTTL~~~La~~~g~~~v~E~~R~~ 255 (399)
T PRK08099 218 FVRTVAILGGE-SSGKSTLVNKLANIFNTTSAWEYGREY 255 (399)
T ss_pred CCcEEEEEcCC-CCCHHHHHHHHHHHhCCCeeeeccHHH
Confidence 44555777776 499999999996665876444555553
No 269
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=27.91 E-value=23 Score=31.31 Aligned_cols=26 Identities=19% Similarity=0.038 Sum_probs=18.8
Q ss_pred ccccccccccccchhhhhcccchh---cCC
Q 022972 224 KFAGIGGLSEFLGYTSQLCYPFLH---ISY 250 (289)
Q Consensus 224 ~~~~~~G~t~~~Gkt~~l~~l~~~---~g~ 250 (289)
...=++|++| .|||+|...|+++ +||
T Consensus 24 ~viW~TGLSG-sGKSTiA~ale~~L~~~G~ 52 (197)
T COG0529 24 AVIWFTGLSG-SGKSTIANALEEKLFAKGY 52 (197)
T ss_pred eEEEeecCCC-CCHHHHHHHHHHHHHHcCC
Confidence 3456789994 9999998887333 266
No 270
>PRK09087 hypothetical protein; Validated
Probab=27.86 E-value=27 Score=31.21 Aligned_cols=25 Identities=12% Similarity=-0.108 Sum_probs=19.1
Q ss_pred ccccccccccccchhhhhcccchhcC
Q 022972 224 KFAGIGGLSEFLGYTSQLCYPFLHIS 249 (289)
Q Consensus 224 ~~~~~~G~t~~~Gkt~~l~~l~~~~g 249 (289)
+...+.|.+| +|||.+++..+++.+
T Consensus 45 ~~l~l~G~~G-sGKThLl~~~~~~~~ 69 (226)
T PRK09087 45 PVVVLAGPVG-SGKTHLASIWREKSD 69 (226)
T ss_pred CeEEEECCCC-CCHHHHHHHHHHhcC
Confidence 4458889984 999999998854433
No 271
>PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed
Probab=27.82 E-value=3.4e+02 Score=24.81 Aligned_cols=42 Identities=17% Similarity=0.269 Sum_probs=29.0
Q ss_pred ccHHHHHHHHhcCCCCCcEEEEcCCCCchHHHHHHHHHccCCCe
Q 022972 157 YNKQFLSKVEEKLPKDTDLIVACQKGLRSLAACELLYNAGYRNL 200 (289)
Q Consensus 157 ~~~~f~~~~~~~l~k~~~IVvyC~~G~RS~~aa~~L~~~G~~nV 200 (289)
...+...++...+++ .+.+++-+|..+..-+..+..+|++-|
T Consensus 196 ~d~~~~~~l~~~~p~--~~~vIaegGI~t~ed~~~~~~~Gad~v 237 (260)
T PRK00278 196 VDLETTERLAPLIPS--DRLVVSESGIFTPEDLKRLAKAGADAV 237 (260)
T ss_pred CCHHHHHHHHHhCCC--CCEEEEEeCCCCHHHHHHHHHcCCCEE
Confidence 344556666655653 346778888888888888888999633
No 272
>PF05729 NACHT: NACHT domain
Probab=27.65 E-value=23 Score=28.55 Aligned_cols=19 Identities=21% Similarity=-0.048 Sum_probs=15.3
Q ss_pred ccccccccccchhhhhcccc
Q 022972 226 AGIGGLSEFLGYTSQLCYPF 245 (289)
Q Consensus 226 ~~~~G~t~~~Gkt~~l~~l~ 245 (289)
..+.|.. |+|||.+++.++
T Consensus 3 l~I~G~~-G~GKStll~~~~ 21 (166)
T PF05729_consen 3 LWISGEP-GSGKSTLLRKLA 21 (166)
T ss_pred EEEECCC-CCChHHHHHHHH
Confidence 4577887 599999999874
No 273
>TIGR00041 DTMP_kinase thymidylate kinase. Function: phosphorylation of DTMP to form DTDP in both de novo and salvage pathways of DTTP synthesis. Catalytic activity: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate.
Probab=27.60 E-value=23 Score=30.06 Aligned_cols=23 Identities=26% Similarity=0.101 Sum_probs=18.7
Q ss_pred ccccccccccccchhhhhcccchh
Q 022972 224 KFAGIGGLSEFLGYTSQLCYPFLH 247 (289)
Q Consensus 224 ~~~~~~G~t~~~Gkt~~l~~l~~~ 247 (289)
.+.++.|.. |+|||++.+.|+++
T Consensus 4 ~~IvieG~~-GsGKsT~~~~L~~~ 26 (195)
T TIGR00041 4 MFIVIEGID-GAGKTTQANLLKKL 26 (195)
T ss_pred eEEEEECCC-CCCHHHHHHHHHHH
Confidence 467888988 49999999999544
No 274
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=27.45 E-value=24 Score=30.28 Aligned_cols=21 Identities=29% Similarity=0.055 Sum_probs=17.0
Q ss_pred ccccccccccchhhhhcccchh
Q 022972 226 AGIGGLSEFLGYTSQLCYPFLH 247 (289)
Q Consensus 226 ~~~~G~t~~~Gkt~~l~~l~~~ 247 (289)
.+++|.+ |+|||.+.+.+++.
T Consensus 2 i~i~G~s-gsGKttla~~l~~~ 22 (179)
T cd02028 2 VGIAGPS-GSGKTTFAKKLSNQ 22 (179)
T ss_pred EEEECCC-CCCHHHHHHHHHHH
Confidence 4788998 49999999998444
No 275
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=27.41 E-value=23 Score=30.22 Aligned_cols=25 Identities=20% Similarity=-0.037 Sum_probs=17.9
Q ss_pred ccccccccccchhhhhcccchh---cCCC
Q 022972 226 AGIGGLSEFLGYTSQLCYPFLH---ISYP 251 (289)
Q Consensus 226 ~~~~G~t~~~Gkt~~l~~l~~~---~g~~ 251 (289)
.-++|++| +|||++-+.|+++ .|++
T Consensus 5 IwltGlsG-sGKtTlA~~L~~~L~~~g~~ 32 (156)
T PF01583_consen 5 IWLTGLSG-SGKTTLARALERRLFARGIK 32 (156)
T ss_dssp EEEESSTT-SSHHHHHHHHHHHHHHTTS-
T ss_pred EEEECCCC-CCHHHHHHHHHHHHHHcCCc
Confidence 45789994 9999999987332 2665
No 276
>PRK13974 thymidylate kinase; Provisional
Probab=27.36 E-value=1.2e+02 Score=26.41 Aligned_cols=54 Identities=17% Similarity=0.092 Sum_probs=33.3
Q ss_pred ccccccccccccchhhhhcccchhc---C------------CCCcchhHHHHHHHH-----------HHHHHHhhhhHHH
Q 022972 224 KFAGIGGLSEFLGYTSQLCYPFLHI---S------------YPSTSFSKMTYVIIH-----------AMDSLYVGNLRNW 277 (289)
Q Consensus 224 ~~~~~~G~t~~~Gkt~~l~~l~~~~---g------------~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~ 277 (289)
.+.++-|.+ |+|||++.+.+++.. | .|+-.-+++++--+| ..++++|.+.|--
T Consensus 4 ~~i~~eG~d-GsGKsT~~~~l~~~l~~~g~~~~~~~~~~~~~p~~~~~g~~ir~~l~~~~~~~~~~~~~~~llf~adr~~ 82 (212)
T PRK13974 4 KFIVLEGID-GCGKTTQIDHLSKWLPSSGLMPKGAKLIITREPGGTLLGKSLRELLLDTSKDNSPSPLAELLLYAADRAQ 82 (212)
T ss_pred cEEEEECCC-CCCHHHHHHHHHHHHHhcCccccCCeeeeeeCCCCCchHHHHHHHHcCCCcccCCCHHHHHHHHHHHHHH
Confidence 466778888 499999999884322 3 232223566655555 2457777776643
Q ss_pred H
Q 022972 278 W 278 (289)
Q Consensus 278 ~ 278 (289)
|
T Consensus 83 ~ 83 (212)
T PRK13974 83 H 83 (212)
T ss_pred H
Confidence 3
No 277
>COG0324 MiaA tRNA delta(2)-isopentenylpyrophosphate transferase [Translation, ribosomal structure and biogenesis]
Probab=27.36 E-value=26 Score=33.26 Aligned_cols=27 Identities=19% Similarity=0.000 Sum_probs=22.2
Q ss_pred CccccccccccccchhhhhcccchhcCC
Q 022972 223 LKFAGIGGLSEFLGYTSQLCYPFLHISY 250 (289)
Q Consensus 223 ~~~~~~~G~t~~~Gkt~~l~~l~~~~g~ 250 (289)
.+..++.|.| ++|||++--.||++-|-
T Consensus 3 ~~~i~I~GPT-AsGKT~lai~LAk~~~~ 29 (308)
T COG0324 3 PKLIVIAGPT-ASGKTALAIALAKRLGG 29 (308)
T ss_pred ccEEEEECCC-CcCHHHHHHHHHHHcCC
Confidence 3567899999 59999999999776654
No 278
>COG1440 CelA Phosphotransferase system cellobiose-specific component IIB [Carbohydrate transport and metabolism]
Probab=27.34 E-value=68 Score=25.55 Aligned_cols=23 Identities=13% Similarity=0.391 Sum_probs=18.1
Q ss_pred CcEEEEcCCCCchHHHHHHHHHc
Q 022972 173 TDLIVACQKGLRSLAACELLYNA 195 (289)
Q Consensus 173 ~~IVvyC~~G~RS~~aa~~L~~~ 195 (289)
++|.++|..|+.++.++..+++.
T Consensus 2 k~IlLvC~aGmSTSlLV~Km~~a 24 (102)
T COG1440 2 KKILLVCAAGMSTSLLVTKMKKA 24 (102)
T ss_pred ceEEEEecCCCcHHHHHHHHHHH
Confidence 47899999999877777766553
No 279
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=27.30 E-value=27 Score=34.56 Aligned_cols=27 Identities=15% Similarity=-0.096 Sum_probs=21.8
Q ss_pred ccccccccccccchhhhhcccchhcCCC
Q 022972 224 KFAGIGGLSEFLGYTSQLCYPFLHISYP 251 (289)
Q Consensus 224 ~~~~~~G~t~~~Gkt~~l~~l~~~~g~~ 251 (289)
.-..+.|.|| +|||.+.|.+|+..+.|
T Consensus 117 ~~iLL~GP~G-sGKT~lAraLA~~l~~p 143 (413)
T TIGR00382 117 SNILLIGPTG-SGKTLLAQTLARILNVP 143 (413)
T ss_pred ceEEEECCCC-cCHHHHHHHHHHhcCCC
Confidence 3456789994 99999999997776766
No 280
>PRK14061 unknown domain/lipoate-protein ligase A fusion protein; Provisional
Probab=27.10 E-value=2.1e+02 Score=29.62 Aligned_cols=77 Identities=13% Similarity=0.120 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHHHHHHHhhhccccCCCchhhhhhhhHHHHHHHHHHHhhhCCCcce--eCHHHHHHhhc--CCCcEEEEe
Q 022972 30 LRLVVFCFFSMFFFLKNLGGIRMQAGGEEYELKQMRDMAAAKKRWDALIRDGKVKV--LTPREAGYAVQ--LSSKTLLDV 105 (289)
Q Consensus 30 ~~~~~l~l~~~l~~l~~~g~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--Is~~el~~~l~--~~~~vlIDV 105 (289)
.|..++++|.++++++..|...-+..+.....+|+++.+..-.+..+....+.+.. -+-+.+.++++ ..+..|+|+
T Consensus 11 ~r~~i~~~c~~~~~~~~~g~~~~~~~~q~~~~~Q~~~Ls~~L~~Q~a~~~~~~~~~~~~~~~~l~~~ln~l~~~~~vlDA 90 (562)
T PRK14061 11 HRAVIVLFCLALLVALMQGASWFSQNHQRQRNPQLEELARTLARQVTLNVAPLMRTDSPDEKRIQAILDQLTDESRILDA 90 (562)
T ss_pred HHHHHHHHHHHHHHHHHhCCeeeccchHHHHHHHHHHHHHHHHHHHHHhhhHHhhccCccHHHHHHHHHHhhcCceEeee
Confidence 34555555656666666677665566666666777776655544432222222222 33455555554 235567776
Q ss_pred C
Q 022972 106 R 106 (289)
Q Consensus 106 R 106 (289)
-
T Consensus 91 s 91 (562)
T PRK14061 91 G 91 (562)
T ss_pred e
Confidence 5
No 281
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=27.09 E-value=70 Score=33.53 Aligned_cols=51 Identities=10% Similarity=0.283 Sum_probs=41.1
Q ss_pred ccHHHHHHHHhcCCCCCcEEEEcCCCCchHHHHHHHHHccCCCeeEccccHH
Q 022972 157 YNKQFLSKVEEKLPKDTDLIVACQKGLRSLAACELLYNAGYRNLFWVQGGLE 208 (289)
Q Consensus 157 ~~~~f~~~~~~~l~k~~~IVvyC~~G~RS~~aa~~L~~~G~~nV~~L~GG~~ 208 (289)
..+.+++++.....++..++|+|++-.++..++..|...|++ +..+.|++.
T Consensus 427 qi~~Ll~eI~~~~~~g~~vLIf~~tk~~ae~L~~~L~~~gi~-~~~lh~~~~ 477 (655)
T TIGR00631 427 QVDDLLSEIRQRVARNERVLVTTLTKKMAEDLTDYLKELGIK-VRYLHSEID 477 (655)
T ss_pred hHHHHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHhhhccc-eeeeeCCCC
Confidence 345777777766677788999999888899999999999995 777777654
No 282
>PLN02165 adenylate isopentenyltransferase
Probab=27.02 E-value=32 Score=33.05 Aligned_cols=27 Identities=15% Similarity=-0.070 Sum_probs=22.0
Q ss_pred CccccccccccccchhhhhcccchhcCC
Q 022972 223 LKFAGIGGLSEFLGYTSQLCYPFLHISY 250 (289)
Q Consensus 223 ~~~~~~~G~t~~~Gkt~~l~~l~~~~g~ 250 (289)
-...++.|.|| +|||++...||+..|+
T Consensus 43 g~iivIiGPTG-SGKStLA~~LA~~l~~ 69 (334)
T PLN02165 43 DKVVVIMGATG-SGKSRLSVDLATRFPS 69 (334)
T ss_pred CCEEEEECCCC-CcHHHHHHHHHHHcCC
Confidence 34678999995 9999999999766564
No 283
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=26.75 E-value=19 Score=30.75 Aligned_cols=20 Identities=25% Similarity=0.106 Sum_probs=14.8
Q ss_pred cccccccccchhhhhcccchh
Q 022972 227 GIGGLSEFLGYTSQLCYPFLH 247 (289)
Q Consensus 227 ~~~G~t~~~Gkt~~l~~l~~~ 247 (289)
.++|..| +|||++++++.++
T Consensus 3 ~iTG~pG-~GKTTll~k~i~~ 22 (168)
T PF03266_consen 3 FITGPPG-VGKTTLLKKVIEE 22 (168)
T ss_dssp EEES-TT-SSHHHHHHHHHHH
T ss_pred EEECcCC-CCHHHHHHHHHHH
Confidence 4788884 9999999986443
No 284
>PF02492 cobW: CobW/HypB/UreG, nucleotide-binding domain; InterPro: IPR003495 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CobW proteins are generally found proximal to the trimeric cobaltochelatase subunit CobN, which is essential for vitamin B12 (cobalamin) biosynthesis []. They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids. This entry represents CobW-like proteins, including P47K (P31521 from SWISSPROT), a Pseudomonas chlororaphis protein needed for nitrile hydratase expression [], and urease accessory protein UreG, which acts as a chaperone in the activation of urease upon insertion of nickel into the active site [].; PDB: 2WSM_B 1NIJ_A 2HF9_A 2HF8_B.
Probab=26.72 E-value=22 Score=30.30 Aligned_cols=19 Identities=21% Similarity=0.118 Sum_probs=16.0
Q ss_pred ccccccccccchhhhhcccc
Q 022972 226 AGIGGLSEFLGYTSQLCYPF 245 (289)
Q Consensus 226 ~~~~G~t~~~Gkt~~l~~l~ 245 (289)
..++|.-| +|||++++.+.
T Consensus 3 ~ii~GfLG-sGKTTli~~ll 21 (178)
T PF02492_consen 3 IIITGFLG-SGKTTLINHLL 21 (178)
T ss_dssp EEEEESTT-SSHHHHHHHHH
T ss_pred EEEEcCCC-CCHHHHHHHHH
Confidence 46788884 99999999985
No 285
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=26.68 E-value=25 Score=30.69 Aligned_cols=26 Identities=12% Similarity=-0.061 Sum_probs=20.8
Q ss_pred CCCccccccccccccchhhhhcccchh
Q 022972 221 QPLKFAGIGGLSEFLGYTSQLCYPFLH 247 (289)
Q Consensus 221 ~~~~~~~~~G~t~~~Gkt~~l~~l~~~ 247 (289)
......++.|..| +|||++++++.++
T Consensus 20 ~~~~~i~~~G~~g-sGKTTli~~l~~~ 45 (207)
T TIGR00073 20 HGLVVLNFMSSPG-SGKTTLIEKLIDN 45 (207)
T ss_pred cCcEEEEEECCCC-CCHHHHHHHHHHH
Confidence 3567778899984 9999999998555
No 286
>PLN02200 adenylate kinase family protein
Probab=26.63 E-value=31 Score=31.10 Aligned_cols=27 Identities=11% Similarity=-0.140 Sum_probs=22.2
Q ss_pred ccccccccccccchhhhhcccchhcCCC
Q 022972 224 KFAGIGGLSEFLGYTSQLCYPFLHISYP 251 (289)
Q Consensus 224 ~~~~~~G~t~~~Gkt~~l~~l~~~~g~~ 251 (289)
....+.|.. |+|||++-+.||++-|++
T Consensus 44 ~ii~I~G~P-GSGKsT~a~~La~~~g~~ 70 (234)
T PLN02200 44 FITFVLGGP-GSGKGTQCEKIVETFGFK 70 (234)
T ss_pred EEEEEECCC-CCCHHHHHHHHHHHhCCe
Confidence 456778888 599999999997777987
No 287
>PRK13949 shikimate kinase; Provisional
Probab=26.54 E-value=29 Score=29.48 Aligned_cols=25 Identities=12% Similarity=-0.170 Sum_probs=20.4
Q ss_pred ccccccccccchhhhhcccchhcCCC
Q 022972 226 AGIGGLSEFLGYTSQLCYPFLHISYP 251 (289)
Q Consensus 226 ~~~~G~t~~~Gkt~~l~~l~~~~g~~ 251 (289)
..+.|.. |.|||++-+.||+..|++
T Consensus 4 I~liG~~-GsGKstl~~~La~~l~~~ 28 (169)
T PRK13949 4 IFLVGYM-GAGKTTLGKALARELGLS 28 (169)
T ss_pred EEEECCC-CCCHHHHHHHHHHHcCCC
Confidence 4566776 499999999997777997
No 288
>PRK07667 uridine kinase; Provisional
Probab=26.49 E-value=25 Score=30.37 Aligned_cols=23 Identities=30% Similarity=0.212 Sum_probs=18.9
Q ss_pred Cccccccccccccchhhhhcccch
Q 022972 223 LKFAGIGGLSEFLGYTSQLCYPFL 246 (289)
Q Consensus 223 ~~~~~~~G~t~~~Gkt~~l~~l~~ 246 (289)
....+++|.+| +|||++.+.|++
T Consensus 17 ~~iIgI~G~~g-sGKStla~~L~~ 39 (193)
T PRK07667 17 RFILGIDGLSR-SGKTTFVANLKE 39 (193)
T ss_pred CEEEEEECCCC-CCHHHHHHHHHH
Confidence 36779999994 999999888844
No 289
>PLN02645 phosphoglycolate phosphatase
Probab=26.47 E-value=1.8e+02 Score=27.08 Aligned_cols=24 Identities=17% Similarity=0.196 Sum_probs=16.1
Q ss_pred ceeCHHHHHHhhcCCCcEEEEeCC
Q 022972 84 KVLTPREAGYAVQLSSKTLLDVRP 107 (289)
Q Consensus 84 ~~Is~~el~~~l~~~~~vlIDVRs 107 (289)
+..+.+++.+++.+=+.+++|+-.
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~D~DG 37 (311)
T PLN02645 14 QLLTLENADELIDSVETFIFDCDG 37 (311)
T ss_pred ccCCHHHHHHHHHhCCEEEEeCcC
Confidence 355666777776555678888763
No 290
>PRK12906 secA preprotein translocase subunit SecA; Reviewed
Probab=26.32 E-value=83 Score=33.84 Aligned_cols=48 Identities=19% Similarity=0.137 Sum_probs=37.9
Q ss_pred HHHHHhcCCCCCcEEEEcCCCCchHHHHHHHHHccCCCeeEccccHHHH
Q 022972 162 LSKVEEKLPKDTDLIVACQKGLRSLAACELLYNAGYRNLFWVQGGLEAA 210 (289)
Q Consensus 162 ~~~~~~~l~k~~~IVvyC~~G~RS~~aa~~L~~~G~~nV~~L~GG~~aw 210 (289)
.+.+.....++.|++|.|++-..|..++..|.+.|++ ...|.+....-
T Consensus 430 ~~~i~~~~~~g~pvLI~t~si~~se~ls~~L~~~gi~-~~~Lna~~~~~ 477 (796)
T PRK12906 430 VKEIKERHAKGQPVLVGTVAIESSERLSHLLDEAGIP-HAVLNAKNHAK 477 (796)
T ss_pred HHHHHHHHhCCCCEEEEeCcHHHHHHHHHHHHHCCCC-eeEecCCcHHH
Confidence 3333333457889999999988899999999999996 77898887643
No 291
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=26.24 E-value=28 Score=31.44 Aligned_cols=28 Identities=14% Similarity=0.105 Sum_probs=22.9
Q ss_pred CccccccccccccchhhhhcccchhcCCC
Q 022972 223 LKFAGIGGLSEFLGYTSQLCYPFLHISYP 251 (289)
Q Consensus 223 ~~~~~~~G~t~~~Gkt~~l~~l~~~~g~~ 251 (289)
..+.++.|.-| +|||++-+.||++.|.+
T Consensus 4 ~~~IvI~G~IG-~GKSTLa~~La~~l~~~ 31 (216)
T COG1428 4 AMVIVIEGMIG-AGKSTLAQALAEHLGFK 31 (216)
T ss_pred ccEEEEecccc-cCHHHHHHHHHHHhCCc
Confidence 35678999984 99999999997777753
No 292
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=26.21 E-value=25 Score=30.55 Aligned_cols=22 Identities=14% Similarity=0.075 Sum_probs=16.9
Q ss_pred cccccccccccchhhhhcccchh
Q 022972 225 FAGIGGLSEFLGYTSQLCYPFLH 247 (289)
Q Consensus 225 ~~~~~G~t~~~Gkt~~l~~l~~~ 247 (289)
...+.|.|| +|||+.++.++..
T Consensus 3 lilI~GptG-SGKTTll~~ll~~ 24 (198)
T cd01131 3 LVLVTGPTG-SGKSTTLAAMIDY 24 (198)
T ss_pred EEEEECCCC-CCHHHHHHHHHHH
Confidence 456889995 9999999986433
No 293
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=25.83 E-value=99 Score=23.21 Aligned_cols=75 Identities=11% Similarity=0.005 Sum_probs=39.0
Q ss_pred CCCcEEEEcC------CCCchHHHHHHHHHccCCC-eeEccccHHHHHhCCCCccCCCCCccccccccccccchhhhhcc
Q 022972 171 KDTDLIVACQ------KGLRSLAACELLYNAGYRN-LFWVQGGLEAAEEEDLVREGPQPLKFAGIGGLSEFLGYTSQLCY 243 (289)
Q Consensus 171 k~~~IVvyC~------~G~RS~~aa~~L~~~G~~n-V~~L~GG~~aw~~~gl~~~~~~~~~~~~~~G~t~~~Gkt~~l~~ 243 (289)
++.+||||.. ....+..+...|...|.+- ...+... ...+++-....+....+...++|. .+|--+.+.+
T Consensus 6 ~~~~vvvf~k~~~~~~~Cp~C~~ak~~L~~~~i~y~~idv~~~-~~~~~~l~~~~g~~tvP~vfi~g~--~iGG~~~l~~ 82 (90)
T cd03028 6 KENPVVLFMKGTPEEPRCGFSRKVVQILNQLGVDFGTFDILED-EEVRQGLKEYSNWPTFPQLYVNGE--LVGGCDIVKE 82 (90)
T ss_pred ccCCEEEEEcCCCCCCCCcHHHHHHHHHHHcCCCeEEEEcCCC-HHHHHHHHHHhCCCCCCEEEECCE--EEeCHHHHHH
Confidence 3458999975 3446888999999999751 2232222 222222111111122333455665 3555555655
Q ss_pred cchhcC
Q 022972 244 PFLHIS 249 (289)
Q Consensus 244 l~~~~g 249 (289)
| -+.|
T Consensus 83 l-~~~g 87 (90)
T cd03028 83 M-HESG 87 (90)
T ss_pred H-HHcC
Confidence 6 4444
No 294
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=25.78 E-value=26 Score=31.52 Aligned_cols=26 Identities=15% Similarity=0.123 Sum_probs=21.2
Q ss_pred CCCccccccccccccchhhhhcccchh
Q 022972 221 QPLKFAGIGGLSEFLGYTSQLCYPFLH 247 (289)
Q Consensus 221 ~~~~~~~~~G~t~~~Gkt~~l~~l~~~ 247 (289)
.+....+++|.. |+|||.+.++.+.+
T Consensus 17 ~~~~~v~I~G~~-G~GKT~LA~~~~~~ 42 (287)
T PF00931_consen 17 NEVRVVAIVGMG-GIGKTTLARQVARD 42 (287)
T ss_dssp TSSEEEEEEEST-TSSHHHHHHHHHCH
T ss_pred CCeEEEEEEcCC-cCCcceeeeecccc
Confidence 466888999998 49999999887555
No 295
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=25.78 E-value=29 Score=31.02 Aligned_cols=23 Identities=22% Similarity=0.065 Sum_probs=18.2
Q ss_pred ccccccccccccchhhhhcccchh
Q 022972 224 KFAGIGGLSEFLGYTSQLCYPFLH 247 (289)
Q Consensus 224 ~~~~~~G~t~~~Gkt~~l~~l~~~ 247 (289)
....+.|.. |+|||.+++.++.+
T Consensus 44 ~~~~l~G~~-G~GKTtl~~~l~~~ 66 (269)
T TIGR03015 44 GFILITGEV-GAGKTTLIRNLLKR 66 (269)
T ss_pred CEEEEEcCC-CCCHHHHHHHHHHh
Confidence 456788888 49999999988444
No 296
>KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification]
Probab=25.73 E-value=90 Score=32.15 Aligned_cols=36 Identities=25% Similarity=0.400 Sum_probs=30.5
Q ss_pred CCcEEEEcCCCCchHHHHHHHHHccCCCeeEccccHH
Q 022972 172 DTDLIVACQKGLRSLAACELLYNAGYRNLFWVQGGLE 208 (289)
Q Consensus 172 ~~~IVvyC~~G~RS~~aa~~L~~~G~~nV~~L~GG~~ 208 (289)
+.|++|+.+.-..+..+|..|.++||+ ++.|.||-.
T Consensus 517 ~ppiIIFvN~kk~~d~lAk~LeK~g~~-~~tlHg~k~ 552 (673)
T KOG0333|consen 517 DPPIIIFVNTKKGADALAKILEKAGYK-VTTLHGGKS 552 (673)
T ss_pred CCCEEEEEechhhHHHHHHHHhhccce-EEEeeCCcc
Confidence 467889888766788999999999995 999999953
No 297
>PRK09200 preprotein translocase subunit SecA; Reviewed
Probab=25.43 E-value=95 Score=33.38 Aligned_cols=39 Identities=15% Similarity=0.070 Sum_probs=33.8
Q ss_pred CCCCcEEEEcCCCCchHHHHHHHHHccCCCeeEccccHHH
Q 022972 170 PKDTDLIVACQKGLRSLAACELLYNAGYRNLFWVQGGLEA 209 (289)
Q Consensus 170 ~k~~~IVvyC~~G~RS~~aa~~L~~~G~~nV~~L~GG~~a 209 (289)
.+.+|++|+|++-..+...+..|...|++ +..|.|....
T Consensus 426 ~~~~pvLIf~~t~~~se~l~~~L~~~gi~-~~~L~~~~~~ 464 (790)
T PRK09200 426 ETGRPVLIGTGSIEQSETFSKLLDEAGIP-HNLLNAKNAA 464 (790)
T ss_pred hcCCCEEEEeCcHHHHHHHHHHHHHCCCC-EEEecCCccH
Confidence 46789999999988899999999999996 8889988554
No 298
>TIGR00963 secA preprotein translocase, SecA subunit. The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus.
Probab=25.19 E-value=98 Score=33.06 Aligned_cols=47 Identities=15% Similarity=0.150 Sum_probs=37.1
Q ss_pred HHHHHHhcCCCCCcEEEEcCCCCchHHHHHHHHHccCCCeeEccccHH
Q 022972 161 FLSKVEEKLPKDTDLIVACQKGLRSLAACELLYNAGYRNLFWVQGGLE 208 (289)
Q Consensus 161 f~~~~~~~l~k~~~IVvyC~~G~RS~~aa~~L~~~G~~nV~~L~GG~~ 208 (289)
..+++.+...+++|++|.|++-..|..++..|...|++ ...|.+.-.
T Consensus 394 i~~~i~~~~~~grpvLV~t~si~~se~ls~~L~~~gi~-~~~Lna~q~ 440 (745)
T TIGR00963 394 VVDEIKERHAKGQPVLVGTTSVEKSELLSNLLKERGIP-HNVLNAKNH 440 (745)
T ss_pred HHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHcCCC-eEEeeCChH
Confidence 33444434568899999999888899999999999997 678888744
No 299
>TIGR03714 secA2 accessory Sec system translocase SecA2. Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii.
Probab=25.16 E-value=1e+02 Score=32.93 Aligned_cols=49 Identities=18% Similarity=0.076 Sum_probs=38.0
Q ss_pred HHHHHHhcCCCCCcEEEEcCCCCchHHHHHHHHHccCCCeeEccccHHHH
Q 022972 161 FLSKVEEKLPKDTDLIVACQKGLRSLAACELLYNAGYRNLFWVQGGLEAA 210 (289)
Q Consensus 161 f~~~~~~~l~k~~~IVvyC~~G~RS~~aa~~L~~~G~~nV~~L~GG~~aw 210 (289)
..+.+.+...++.|++|+|++-..|...+..|...|++ +..|.|....-
T Consensus 413 i~~~i~~~~~~~~pvLIft~s~~~se~ls~~L~~~gi~-~~~L~a~~~~~ 461 (762)
T TIGR03714 413 TLEDVKEYHETGQPVLLITGSVEMSEIYSELLLREGIP-HNLLNAQNAAK 461 (762)
T ss_pred HHHHHHHHhhCCCCEEEEECcHHHHHHHHHHHHHCCCC-EEEecCCChHH
Confidence 33444433456789999999877899999999999996 77888887654
No 300
>PF00733 Asn_synthase: Asparagine synthase; InterPro: IPR001962 This domain is always found associated with (IPR000583 from INTERPRO). Family members that contain this domain catalyse the conversion of aspartate to asparagine. Asparagine synthetase B (6.3.5.4 from EC) catalyzes the assembly of asparagine from aspartate, Mg(2+)ATP, and glutamine. The three-dimensional architecture of the N-terminal domain of asparagine synthetase B is similar to that observed for glutamine phosphoribosylpyrophosphate amidotransferase while the molecular motif of the C-domain is reminiscent to that observed for GMP synthetase [].; GO: 0004066 asparagine synthase (glutamine-hydrolyzing) activity, 0006529 asparagine biosynthetic process; PDB: 1JGT_A 1M1Z_B 1MB9_B 1MBZ_B 1MC1_A 1Q15_D 1Q19_C 1CT9_C 3K32_F.
Probab=25.11 E-value=1e+02 Score=26.84 Aligned_cols=43 Identities=21% Similarity=0.162 Sum_probs=29.4
Q ss_pred HHHHHHhcCCCCCcEEEEcCCCCchHHHHHHHHHccCCCeeEc
Q 022972 161 FLSKVEEKLPKDTDLIVACQKGLRSLAACELLYNAGYRNLFWV 203 (289)
Q Consensus 161 f~~~~~~~l~k~~~IVvyC~~G~RS~~aa~~L~~~G~~nV~~L 203 (289)
+.+.+...+..+.+|.+...||..|..++..+.+....++..+
T Consensus 6 l~~av~~rl~~~~~i~~~LSGGlDSs~i~~~~~~~~~~~~~~~ 48 (255)
T PF00733_consen 6 LEEAVARRLRSDKPIGILLSGGLDSSAIAALAARQGGPPIKTF 48 (255)
T ss_dssp HHHHHHHHCGCTSEEEEE--SSHHHHHHHHHHHHTCCSEEEEE
T ss_pred HHHHHHHHHhcCCCEEEECCCChhHHHHHHHHHHhhCCceeEE
Confidence 4444555577888999999999999999999999333344433
No 301
>PF13476 AAA_23: AAA domain; PDB: 3AV0_B 3AUY_B 3AUX_A 2O5V_A 3QG5_B 3QF7_A 3THO_A.
Probab=25.07 E-value=26 Score=29.28 Aligned_cols=22 Identities=18% Similarity=-0.005 Sum_probs=18.1
Q ss_pred CCccccccccccccchhhhhccc
Q 022972 222 PLKFAGIGGLSEFLGYTSQLCYP 244 (289)
Q Consensus 222 ~~~~~~~~G~t~~~Gkt~~l~~l 244 (289)
...+.+++|.+| .|||.++..+
T Consensus 18 ~~g~~vi~G~Ng-~GKStil~ai 39 (202)
T PF13476_consen 18 SPGLNVIYGPNG-SGKSTILEAI 39 (202)
T ss_dssp -SEEEEEEESTT-SSHHHHHHHH
T ss_pred CCCcEEEECCCC-CCHHHHHHHH
Confidence 346788999995 9999999887
No 302
>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]
Probab=25.05 E-value=22 Score=33.10 Aligned_cols=37 Identities=19% Similarity=-0.059 Sum_probs=28.9
Q ss_pred CCccccccccccccchhhhhcccchhcCCCCcchhHHHHH
Q 022972 222 PLKFAGIGGLSEFLGYTSQLCYPFLHISYPSTSFSKMTYV 261 (289)
Q Consensus 222 ~~~~~~~~G~t~~~Gkt~~l~~l~~~~g~~~~~~~~~~~~ 261 (289)
..+...++|.|+|+|+. +.++| +++|| .+++.+|---
T Consensus 5 ~~~~~lITGASsGIG~~-~A~~l-A~~g~-~liLvaR~~~ 41 (265)
T COG0300 5 KGKTALITGASSGIGAE-LAKQL-ARRGY-NLILVARRED 41 (265)
T ss_pred CCcEEEEECCCchHHHH-HHHHH-HHCCC-EEEEEeCcHH
Confidence 45678999999999986 55667 79999 7888877543
No 303
>PRK05642 DNA replication initiation factor; Validated
Probab=25.03 E-value=30 Score=31.01 Aligned_cols=21 Identities=14% Similarity=0.089 Sum_probs=17.0
Q ss_pred ccccccccccccchhhhhcccc
Q 022972 224 KFAGIGGLSEFLGYTSQLCYPF 245 (289)
Q Consensus 224 ~~~~~~G~t~~~Gkt~~l~~l~ 245 (289)
....+.|.+| +|||.+++..+
T Consensus 46 ~~l~l~G~~G-~GKTHLl~a~~ 66 (234)
T PRK05642 46 SLIYLWGKDG-VGRSHLLQAAC 66 (234)
T ss_pred CeEEEECCCC-CCHHHHHHHHH
Confidence 4557889884 99999999874
No 304
>PHA02244 ATPase-like protein
Probab=25.02 E-value=30 Score=33.89 Aligned_cols=24 Identities=8% Similarity=-0.225 Sum_probs=20.0
Q ss_pred cccccccccchhhhhcccchhcCCC
Q 022972 227 GIGGLSEFLGYTSQLCYPFLHISYP 251 (289)
Q Consensus 227 ~~~G~t~~~Gkt~~l~~l~~~~g~~ 251 (289)
-+.|.+ |+|||.+.+.+++..|.|
T Consensus 123 LL~Gpp-GtGKTtLA~aLA~~lg~p 146 (383)
T PHA02244 123 FLKGGA-GSGKNHIAEQIAEALDLD 146 (383)
T ss_pred EEECCC-CCCHHHHHHHHHHHhCCC
Confidence 346788 499999999998888887
No 305
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=25.02 E-value=1.2e+02 Score=24.64 Aligned_cols=39 Identities=21% Similarity=0.130 Sum_probs=29.9
Q ss_pred CCCcEEEEcCCCCchHHHHHHHHHccCCCeeEccccHHHH
Q 022972 171 KDTDLIVACQKGLRSLAACELLYNAGYRNLFWVQGGLEAA 210 (289)
Q Consensus 171 k~~~IVvyC~~G~RS~~aa~~L~~~G~~nV~~L~GG~~aw 210 (289)
++++++|+..| .-+..++..|...|.+++++..--.+..
T Consensus 11 ~~~~vlviGaG-g~ar~v~~~L~~~g~~~i~i~nRt~~ra 49 (135)
T PF01488_consen 11 KGKRVLVIGAG-GAARAVAAALAALGAKEITIVNRTPERA 49 (135)
T ss_dssp TTSEEEEESSS-HHHHHHHHHHHHTTSSEEEEEESSHHHH
T ss_pred CCCEEEEECCH-HHHHHHHHHHHHcCCCEEEEEECCHHHH
Confidence 46678888764 4578888999999999899887765543
No 306
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=24.88 E-value=32 Score=29.72 Aligned_cols=24 Identities=17% Similarity=0.033 Sum_probs=18.7
Q ss_pred ccccccccchhhhhcccchhcCCCC
Q 022972 228 IGGLSEFLGYTSQLCYPFLHISYPS 252 (289)
Q Consensus 228 ~~G~t~~~Gkt~~l~~l~~~~g~~~ 252 (289)
+=|.+ |.|||++-++|+++-|+|.
T Consensus 5 ilG~p-GaGK~T~A~~La~~~~i~h 28 (178)
T COG0563 5 ILGPP-GAGKSTLAKKLAKKLGLPH 28 (178)
T ss_pred EECCC-CCCHHHHHHHHHHHhCCcE
Confidence 34666 5999999999977767763
No 307
>PRK12898 secA preprotein translocase subunit SecA; Reviewed
Probab=24.75 E-value=97 Score=32.58 Aligned_cols=37 Identities=16% Similarity=0.128 Sum_probs=32.2
Q ss_pred CCCcEEEEcCCCCchHHHHHHHHHccCCCeeEccccHH
Q 022972 171 KDTDLIVACQKGLRSLAACELLYNAGYRNLFWVQGGLE 208 (289)
Q Consensus 171 k~~~IVvyC~~G~RS~~aa~~L~~~G~~nV~~L~GG~~ 208 (289)
++++++|+|++-..+..++..|...|++ +..|.|...
T Consensus 472 ~~~pvLIft~t~~~se~L~~~L~~~gi~-~~~Lhg~~~ 508 (656)
T PRK12898 472 QGRPVLVGTRSVAASERLSALLREAGLP-HQVLNAKQD 508 (656)
T ss_pred cCCCEEEEeCcHHHHHHHHHHHHHCCCC-EEEeeCCcH
Confidence 4578999999888899999999999996 888888754
No 308
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=24.74 E-value=28 Score=29.80 Aligned_cols=22 Identities=27% Similarity=0.071 Sum_probs=17.5
Q ss_pred Cccccccccccccchhhhhcccc
Q 022972 223 LKFAGIGGLSEFLGYTSQLCYPF 245 (289)
Q Consensus 223 ~~~~~~~G~t~~~Gkt~~l~~l~ 245 (289)
-....+.|.|| .|||++++.++
T Consensus 25 g~~i~I~G~tG-SGKTTll~aL~ 46 (186)
T cd01130 25 RKNILISGGTG-SGKTTLLNALL 46 (186)
T ss_pred CCEEEEECCCC-CCHHHHHHHHH
Confidence 35668888884 99999999873
No 309
>PRK14729 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Provisional
Probab=24.66 E-value=30 Score=32.70 Aligned_cols=23 Identities=22% Similarity=-0.025 Sum_probs=19.5
Q ss_pred ccccccccccccchhhhhcccchh
Q 022972 224 KFAGIGGLSEFLGYTSQLCYPFLH 247 (289)
Q Consensus 224 ~~~~~~G~t~~~Gkt~~l~~l~~~ 247 (289)
+...+.|.| ++|||++--+||++
T Consensus 5 ~ii~I~GpT-asGKS~LAl~LA~~ 27 (300)
T PRK14729 5 KIVFIFGPT-AVGKSNILFHFPKG 27 (300)
T ss_pred cEEEEECCC-ccCHHHHHHHHHHh
Confidence 367899999 49999999999655
No 310
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=24.63 E-value=28 Score=33.21 Aligned_cols=22 Identities=18% Similarity=-0.064 Sum_probs=17.8
Q ss_pred ccccccccccccchhhhhcccch
Q 022972 224 KFAGIGGLSEFLGYTSQLCYPFL 246 (289)
Q Consensus 224 ~~~~~~G~t~~~Gkt~~l~~l~~ 246 (289)
....++|.|| +|||+.++.|+.
T Consensus 145 ~nilI~G~tG-SGKTTll~aL~~ 166 (323)
T PRK13833 145 LNIVISGGTG-SGKTTLANAVIA 166 (323)
T ss_pred CeEEEECCCC-CCHHHHHHHHHH
Confidence 3457889994 999999999844
No 311
>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB. This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.
Probab=24.60 E-value=32 Score=28.93 Aligned_cols=24 Identities=21% Similarity=0.048 Sum_probs=17.5
Q ss_pred ccccccccccchhhhhcccch---hcCC
Q 022972 226 AGIGGLSEFLGYTSQLCYPFL---HISY 250 (289)
Q Consensus 226 ~~~~G~t~~~Gkt~~l~~l~~---~~g~ 250 (289)
.++.|.+ ++|||.++++|.+ ++||
T Consensus 2 i~i~G~~-gsGKTtl~~~l~~~l~~~G~ 28 (155)
T TIGR00176 2 LQIVGPK-NSGKTTLIERLVKALKARGY 28 (155)
T ss_pred EEEECCC-CCCHHHHHHHHHHHHHhcCC
Confidence 3567888 4999998877644 4487
No 312
>PRK00279 adk adenylate kinase; Reviewed
Probab=24.56 E-value=32 Score=30.13 Aligned_cols=24 Identities=17% Similarity=0.008 Sum_probs=19.5
Q ss_pred cccccccccchhhhhcccchhcCCC
Q 022972 227 GIGGLSEFLGYTSQLCYPFLHISYP 251 (289)
Q Consensus 227 ~~~G~t~~~Gkt~~l~~l~~~~g~~ 251 (289)
.+.|.. |+|||++-+.||++.|++
T Consensus 4 ~v~G~p-GsGKsT~a~~la~~~~~~ 27 (215)
T PRK00279 4 ILLGPP-GAGKGTQAKFIAEKYGIP 27 (215)
T ss_pred EEECCC-CCCHHHHHHHHHHHhCCc
Confidence 455666 599999999997777987
No 313
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=24.54 E-value=33 Score=29.91 Aligned_cols=24 Identities=17% Similarity=-0.074 Sum_probs=19.2
Q ss_pred cccccccccchhhhhcccchhcCCC
Q 022972 227 GIGGLSEFLGYTSQLCYPFLHISYP 251 (289)
Q Consensus 227 ~~~G~t~~~Gkt~~l~~l~~~~g~~ 251 (289)
.+.|.. |+|||++-+.||++-|++
T Consensus 3 ~i~G~p-GsGKsT~a~~La~~~g~~ 26 (210)
T TIGR01351 3 VLLGPP-GSGKGTQAKRIAEKYGLP 26 (210)
T ss_pred EEECCC-CCCHHHHHHHHHHHcCCC
Confidence 345666 599999999997777987
No 314
>TIGR00824 EIIA-man PTS system, mannose/fructose/sorbose family, IIA component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Man family is unique in several respects among PTS permease families It is the only PTS family in which members possess a IID protein. It is the only PTS family in which the IIB constituent is phosphorylated on a histidyl rather than a cysteyl residue. Its permease members exhibit broad specificity for a range of sugars, rather than being specific for just one or a few sugars. The mannose permease of E. coli, for example, can transport and phosphorylate glucose, mannose, fructose, glucosamine, N-acetylglucosamine, and other sugars. Other members of this can transport sorbose, fructose and N-acetylglucosamine. This family is specific for the IIA components.
Probab=24.42 E-value=2e+02 Score=22.83 Aligned_cols=38 Identities=13% Similarity=0.214 Sum_probs=23.1
Q ss_pred HhcCCCCCcEEEEcC--CCCchHHHHHHHHHccCCCeeEccc
Q 022972 166 EEKLPKDTDLIVACQ--KGLRSLAACELLYNAGYRNLFWVQG 205 (289)
Q Consensus 166 ~~~l~k~~~IVvyC~--~G~RS~~aa~~L~~~G~~nV~~L~G 205 (289)
.+.++.++.++|.|+ ||.-...++..+.+ +++++++.|
T Consensus 52 i~~~~~~~~vivltDl~GGSp~n~a~~~~~~--~~~~~vIsG 91 (116)
T TIGR00824 52 LADLDTEEEVLFLVDIFGGSPYNAAARIIVD--KPHMDVIAG 91 (116)
T ss_pred HHhcCCCCCEEEEEeCCCCCHHHHHHHHHhh--cCCEEEEEe
Confidence 334666678888885 56555555545433 456776654
No 315
>TIGR00174 miaA tRNA isopentenyltransferase (miaA). Catalyzes the first step in the modification of an adenosine near the anticodon to 2-methylthio-N6-isopentyladenosine.
Probab=24.26 E-value=33 Score=32.18 Aligned_cols=24 Identities=13% Similarity=-0.024 Sum_probs=19.2
Q ss_pred ccccccccccchhhhhcccchhcCC
Q 022972 226 AGIGGLSEFLGYTSQLCYPFLHISY 250 (289)
Q Consensus 226 ~~~~G~t~~~Gkt~~l~~l~~~~g~ 250 (289)
.++.|.|| +|||++..+|+++.+.
T Consensus 2 i~i~G~t~-~GKs~la~~l~~~~~~ 25 (287)
T TIGR00174 2 IFIMGPTA-VGKSQLAIQLAKKLNA 25 (287)
T ss_pred EEEECCCC-CCHHHHHHHHHHhCCC
Confidence 46789994 9999999999666453
No 316
>PTZ00110 helicase; Provisional
Probab=24.19 E-value=1.1e+02 Score=31.03 Aligned_cols=37 Identities=8% Similarity=0.139 Sum_probs=31.6
Q ss_pred CCCcEEEEcCCCCchHHHHHHHHHccCCCeeEccccHH
Q 022972 171 KDTDLIVACQKGLRSLAACELLYNAGYRNLFWVQGGLE 208 (289)
Q Consensus 171 k~~~IVvyC~~G~RS~~aa~~L~~~G~~nV~~L~GG~~ 208 (289)
.+.+++|||++-..+..++..|+..|++ +..+.|++.
T Consensus 376 ~~~k~LIF~~t~~~a~~l~~~L~~~g~~-~~~ihg~~~ 412 (545)
T PTZ00110 376 DGDKILIFVETKKGADFLTKELRLDGWP-ALCIHGDKK 412 (545)
T ss_pred cCCeEEEEecChHHHHHHHHHHHHcCCc-EEEEECCCc
Confidence 5678999999888889999999999996 778888864
No 317
>PLN02840 tRNA dimethylallyltransferase
Probab=24.15 E-value=42 Score=33.32 Aligned_cols=28 Identities=14% Similarity=-0.040 Sum_probs=22.5
Q ss_pred CCccccccccccccchhhhhcccchhcCC
Q 022972 222 PLKFAGIGGLSEFLGYTSQLCYPFLHISY 250 (289)
Q Consensus 222 ~~~~~~~~G~t~~~Gkt~~l~~l~~~~g~ 250 (289)
...+.++.|.|| +|||++...||++.+.
T Consensus 20 ~~~vi~I~Gptg-sGKTtla~~La~~~~~ 47 (421)
T PLN02840 20 KEKVIVISGPTG-AGKSRLALELAKRLNG 47 (421)
T ss_pred CCeEEEEECCCC-CCHHHHHHHHHHHCCC
Confidence 345689999995 9999999999666553
No 318
>COG0603 Predicted PP-loop superfamily ATPase [General function prediction only]
Probab=24.12 E-value=1e+02 Score=27.98 Aligned_cols=30 Identities=20% Similarity=0.275 Sum_probs=24.8
Q ss_pred CcEEEEcCCCCchHHHHHHHHHccCCCeeEc
Q 022972 173 TDLIVACQKGLRSLAACELLYNAGYRNLFWV 203 (289)
Q Consensus 173 ~~IVvyC~~G~RS~~aa~~L~~~G~~nV~~L 203 (289)
++.||.|.||+.|...+.++.+.|++ |+-+
T Consensus 3 ~kavvl~SGG~DStt~l~~a~~~~~e-v~al 32 (222)
T COG0603 3 KKAVVLLSGGLDSTTCLAWAKKEGYE-VHAL 32 (222)
T ss_pred ceEEEEccCChhHHHHHHHHHhcCCE-EEEE
Confidence 46788899999999999999998875 7654
No 319
>cd02030 NDUO42 NADH:Ubiquinone oxioreductase, 42 kDa (NDUO42) is a family of proteins that are highly similar to deoxyribonucleoside kinases (dNK). Members of this family have been identified as one of the subunits of NADH:Ubiquinone oxioreductase (complex I), a multi-protein complex located in the inner mitochondrial membrane. The main function of the complex is to transport electrons from NADH to ubiquinone, which is accompanied by the translocation of protons from the mitochondrial matrix to the inter membrane space.
Probab=24.08 E-value=31 Score=30.44 Aligned_cols=23 Identities=9% Similarity=-0.138 Sum_probs=17.1
Q ss_pred ccccccccccchhhhhcccchhcC
Q 022972 226 AGIGGLSEFLGYTSQLCYPFLHIS 249 (289)
Q Consensus 226 ~~~~G~t~~~Gkt~~l~~l~~~~g 249 (289)
.++-|.. |+|||++.+.|++..+
T Consensus 2 I~iEG~~-GsGKSTl~~~L~~~l~ 24 (219)
T cd02030 2 ITVDGNI-ASGKGKLAKELAEKLG 24 (219)
T ss_pred EEEEcCC-CCCHHHHHHHHHHHhC
Confidence 3556777 4999999999955444
No 320
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=23.99 E-value=31 Score=27.51 Aligned_cols=20 Identities=20% Similarity=-0.079 Sum_probs=15.4
Q ss_pred cccccccccchhhhhcccchh
Q 022972 227 GIGGLSEFLGYTSQLCYPFLH 247 (289)
Q Consensus 227 ~~~G~t~~~Gkt~~l~~l~~~ 247 (289)
.+.|.+ |+|||.+++.++..
T Consensus 3 ~i~G~~-G~GKT~l~~~i~~~ 22 (165)
T cd01120 3 LVFGPT-GSGKTTLALQLALN 22 (165)
T ss_pred eEeCCC-CCCHHHHHHHHHHH
Confidence 567888 49999998887444
No 321
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=23.89 E-value=21 Score=33.45 Aligned_cols=44 Identities=23% Similarity=0.201 Sum_probs=27.5
Q ss_pred CCCeeEccccHHHHHhCCCCccCCCCCccccccccccccchhhhhccc
Q 022972 197 YRNLFWVQGGLEAAEEEDLVREGPQPLKFAGIGGLSEFLGYTSQLCYP 244 (289)
Q Consensus 197 ~~nV~~L~GG~~aw~~~gl~~~~~~~~~~~~~~G~t~~~Gkt~~l~~l 244 (289)
|+||..-.++..+-.+-.+.. .+-.+.++-|.|| +|||+.||-.
T Consensus 4 ~~nvsk~y~~~~av~~v~l~I---~~gef~vliGpSG-sGKTTtLkMI 47 (309)
T COG1125 4 FENVSKRYGNKKAVDDVNLTI---EEGEFLVLIGPSG-SGKTTTLKMI 47 (309)
T ss_pred eeeeehhcCCceeeeeeeEEe---cCCeEEEEECCCC-CcHHHHHHHH
Confidence 345554444444444334433 4567788889994 9999998753
No 322
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=23.74 E-value=1.2e+02 Score=25.57 Aligned_cols=45 Identities=24% Similarity=0.357 Sum_probs=33.1
Q ss_pred HHHHHHHhcCCCCCcEEEEcC--CCCc--hHHHHHHHHHccCCCeeEccccH
Q 022972 160 QFLSKVEEKLPKDTDLIVACQ--KGLR--SLAACELLYNAGYRNLFWVQGGL 207 (289)
Q Consensus 160 ~f~~~~~~~l~k~~~IVvyC~--~G~R--S~~aa~~L~~~G~~nV~~L~GG~ 207 (289)
+..++. +..+..+|+.|. ++.+ ...+.+.|++.|-+++..+-||.
T Consensus 54 e~v~aA---~~~dv~vIgvSsl~g~h~~l~~~lve~lre~G~~~i~v~~GGv 102 (143)
T COG2185 54 EAVRAA---VEEDVDVIGVSSLDGGHLTLVPGLVEALREAGVEDILVVVGGV 102 (143)
T ss_pred HHHHHH---HhcCCCEEEEEeccchHHHHHHHHHHHHHHhCCcceEEeecCc
Confidence 444443 456678999994 4443 66788899999999999888885
No 323
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=23.61 E-value=2.5e+02 Score=22.92 Aligned_cols=46 Identities=17% Similarity=0.177 Sum_probs=31.8
Q ss_pred cHHHHHHHHhcCCCCCcEEEEcCCC--C--chHHHHHHHHHccCCCeeEcccc
Q 022972 158 NKQFLSKVEEKLPKDTDLIVACQKG--L--RSLAACELLYNAGYRNLFWVQGG 206 (289)
Q Consensus 158 ~~~f~~~~~~~l~k~~~IVvyC~~G--~--RS~~aa~~L~~~G~~nV~~L~GG 206 (289)
.+++.+...+ .+.++|..|..- . ....+...|++.|.+++.++-||
T Consensus 42 ~e~~v~aa~e---~~adii~iSsl~~~~~~~~~~~~~~L~~~g~~~i~vivGG 91 (132)
T TIGR00640 42 PEEIARQAVE---ADVHVVGVSSLAGGHLTLVPALRKELDKLGRPDILVVVGG 91 (132)
T ss_pred HHHHHHHHHH---cCCCEEEEcCchhhhHHHHHHHHHHHHhcCCCCCEEEEeC
Confidence 3467666653 355789999622 2 35567788999998778888887
No 324
>PRK13530 arsenate reductase; Provisional
Probab=23.58 E-value=1.3e+02 Score=24.58 Aligned_cols=35 Identities=14% Similarity=0.017 Sum_probs=24.8
Q ss_pred CcEEEEcC-CCCchHHHHHHHHHccCCCeeEccccH
Q 022972 173 TDLIVACQ-KGLRSLAACELLYNAGYRNLFWVQGGL 207 (289)
Q Consensus 173 ~~IVvyC~-~G~RS~~aa~~L~~~G~~nV~~L~GG~ 207 (289)
++|++.|. +-.||..+..+++.+.=+++.....|.
T Consensus 4 ~~vLFvC~~N~cRS~mAEal~~~~~~~~~~v~SAG~ 39 (133)
T PRK13530 4 KTIYFLCTGNSCRSQMAEGWGKQYLGDKWNVYSAGI 39 (133)
T ss_pred CEEEEEcCCchhHHHHHHHHHHHhcCCCEEEECCCC
Confidence 47999995 455899888888875434566666665
No 325
>cd00047 PTPc Protein tyrosine phosphatases (PTP) catalyze the dephosphorylation of phosphotyrosine peptides; they regulate phosphotyrosine levels in signal transduction pathways. The depth of the active site cleft renders the enzyme specific for phosphorylated Tyr (pTyr) residues, instead of pSer or pThr. This family has a distinctive active site signature motif, HCSAGxGRxG. Characterized as either transmembrane, receptor-like or non-transmembrane (soluble) PTPs. Receptor-like PTP domains tend to occur in two copies in the cytoplasmic region of the transmembrane proteins, only one copy may be active.
Probab=23.42 E-value=1e+02 Score=27.04 Aligned_cols=31 Identities=26% Similarity=0.427 Sum_probs=19.3
Q ss_pred HHHHHHHhcC--CCCCcEEEEcCCC-CchHHHHH
Q 022972 160 QFLSKVEEKL--PKDTDLIVACQKG-LRSLAACE 190 (289)
Q Consensus 160 ~f~~~~~~~l--~k~~~IVvyC~~G-~RS~~aa~ 190 (289)
+|++.+.... +.+.||+|+|..| .||...+.
T Consensus 152 ~~~~~v~~~~~~~~~~pivVHC~~G~gRsg~~~a 185 (231)
T cd00047 152 DLLRKVRKSQQQPGSGPIVVHCSAGVGRTGTFIA 185 (231)
T ss_pred HHHHHHHHHhccCCCCCeEEECCCCCCccchHHH
Confidence 5555555332 2466999999644 58776544
No 326
>PRK10126 tyrosine phosphatase; Provisional
Probab=23.27 E-value=69 Score=26.51 Aligned_cols=37 Identities=30% Similarity=0.274 Sum_probs=25.9
Q ss_pred CcEEEEcC-CCCchHHHHHHHHHccCCCeeEccccHHHH
Q 022972 173 TDLIVACQ-KGLRSLAACELLYNAGYRNLFWVQGGLEAA 210 (289)
Q Consensus 173 ~~IVvyC~-~G~RS~~aa~~L~~~G~~nV~~L~GG~~aw 210 (289)
++|+++|. +-.||..|..+|+..+- ++.+-..|..+|
T Consensus 3 ~~iLFVC~gN~cRSpmAEa~~~~~~~-~~~v~SAG~~~~ 40 (147)
T PRK10126 3 NNILVVCVGNICRSPTAERLLQRYHP-ELKVESAGLGAL 40 (147)
T ss_pred CeEEEEcCCcHhHHHHHHHHHHHhcC-CeEEEeeeccCC
Confidence 47899995 44499999999998753 355556666444
No 327
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=23.27 E-value=35 Score=29.67 Aligned_cols=25 Identities=12% Similarity=-0.056 Sum_probs=20.2
Q ss_pred ccccccccccchhhhhcccchhcCCC
Q 022972 226 AGIGGLSEFLGYTSQLCYPFLHISYP 251 (289)
Q Consensus 226 ~~~~G~t~~~Gkt~~l~~l~~~~g~~ 251 (289)
.++-|.- |.|||+|=|.||+..|+|
T Consensus 5 IvLiG~m-GaGKSTIGr~LAk~L~~~ 29 (172)
T COG0703 5 IVLIGFM-GAGKSTIGRALAKALNLP 29 (172)
T ss_pred EEEEcCC-CCCHhHHHHHHHHHcCCC
Confidence 3556666 479999999998888996
No 328
>KOG0330 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=23.20 E-value=1.9e+02 Score=28.79 Aligned_cols=38 Identities=21% Similarity=0.334 Sum_probs=32.4
Q ss_pred CCcEEEEcCCCCchHHHHHHHHHccCCCeeEccccHHHH
Q 022972 172 DTDLIVACQKGLRSLAACELLYNAGYRNLFWVQGGLEAA 210 (289)
Q Consensus 172 ~~~IVvyC~~G~RS~~aa~~L~~~G~~nV~~L~GG~~aw 210 (289)
+.+++|+|+....+..++-.|+..||. .-.|.|-+..-
T Consensus 300 g~s~iVF~~t~~tt~~la~~L~~lg~~-a~~LhGqmsq~ 337 (476)
T KOG0330|consen 300 GNSVIVFCNTCNTTRFLALLLRNLGFQ-AIPLHGQMSQS 337 (476)
T ss_pred CCcEEEEEeccchHHHHHHHHHhcCcc-eecccchhhHH
Confidence 468999999999999999999999996 77888876543
No 329
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=23.20 E-value=20 Score=34.63 Aligned_cols=42 Identities=24% Similarity=0.166 Sum_probs=25.6
Q ss_pred CeeEccccHHHHHhCCCCccCCCCCccccccccccccchhhhhccc
Q 022972 199 NLFWVQGGLEAAEEEDLVREGPQPLKFAGIGGLSEFLGYTSQLCYP 244 (289)
Q Consensus 199 nV~~L~GG~~aw~~~gl~~~~~~~~~~~~~~G~t~~~Gkt~~l~~l 244 (289)
|+..-.|+..+-.+-.+... +-.+..+=|.|| .|||++||-+
T Consensus 10 ~v~k~yg~~~av~~isl~i~---~Gef~~lLGPSG-cGKTTlLR~I 51 (352)
T COG3842 10 NVSKSFGDFTAVDDISLDIK---KGEFVTLLGPSG-CGKTTLLRMI 51 (352)
T ss_pred eeeeecCCeeEEecceeeec---CCcEEEEECCCC-CCHHHHHHHH
Confidence 34433344444333344432 335677778884 9999999998
No 330
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=23.16 E-value=1.4e+02 Score=29.04 Aligned_cols=37 Identities=22% Similarity=0.223 Sum_probs=31.8
Q ss_pred CCCcEEEEcCCCCchHHHHHHHHHccCCCeeEccccHH
Q 022972 171 KDTDLIVACQKGLRSLAACELLYNAGYRNLFWVQGGLE 208 (289)
Q Consensus 171 k~~~IVvyC~~G~RS~~aa~~L~~~G~~nV~~L~GG~~ 208 (289)
...+++|||++-..+..++..|...|++ +..+.|++.
T Consensus 244 ~~~~~lVF~~s~~~~~~l~~~L~~~~~~-~~~l~g~~~ 280 (434)
T PRK11192 244 EVTRSIVFVRTRERVHELAGWLRKAGIN-CCYLEGEMV 280 (434)
T ss_pred CCCeEEEEeCChHHHHHHHHHHHhCCCC-EEEecCCCC
Confidence 3467999999888899999999999996 889999874
No 331
>TIGR00268 conserved hypothetical protein TIGR00268. The N-terminal region of the model shows similarity to Argininosuccinate synthase proteins using PSI-blast and using the recognize protein identification server.
Probab=23.16 E-value=97 Score=28.04 Aligned_cols=32 Identities=19% Similarity=0.289 Sum_probs=24.8
Q ss_pred CCCCCcEEEEcCCCCchHHHHHHHHHccCCCee
Q 022972 169 LPKDTDLIVACQKGLRSLAACELLYNAGYRNLF 201 (289)
Q Consensus 169 l~k~~~IVvyC~~G~RS~~aa~~L~~~G~~nV~ 201 (289)
+.+.++++|...||..|..++..+.+.|++ +.
T Consensus 9 l~~~~~vlVa~SGGvDSs~ll~la~~~g~~-v~ 40 (252)
T TIGR00268 9 LKEFKKVLIAYSGGVDSSLLAAVCSDAGTE-VL 40 (252)
T ss_pred HHhcCCEEEEecCcHHHHHHHHHHHHhCCC-EE
Confidence 334457888889999999999999888875 43
No 332
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=23.14 E-value=22 Score=29.59 Aligned_cols=27 Identities=15% Similarity=0.123 Sum_probs=16.6
Q ss_pred cccccccchhhhhcccchhcCCC--Ccchh
Q 022972 229 GGLSEFLGYTSQLCYPFLHISYP--STSFS 256 (289)
Q Consensus 229 ~G~t~~~Gkt~~l~~l~~~~g~~--~~~~~ 256 (289)
-|.- |+|||.+.+.+|+..|.. |.-++
T Consensus 5 eg~P-G~GKT~la~~lA~~~~~~f~RIq~t 33 (131)
T PF07726_consen 5 EGVP-GVGKTTLAKALARSLGLSFKRIQFT 33 (131)
T ss_dssp ES----HHHHHHHHHHHHHTT--EEEEE--
T ss_pred ECCC-ccHHHHHHHHHHHHcCCceeEEEec
Confidence 3455 589999999998888876 65554
No 333
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=23.03 E-value=33 Score=30.56 Aligned_cols=20 Identities=20% Similarity=0.172 Sum_probs=16.2
Q ss_pred ccccccccccchhhhhcccch
Q 022972 226 AGIGGLSEFLGYTSQLCYPFL 246 (289)
Q Consensus 226 ~~~~G~t~~~Gkt~~l~~l~~ 246 (289)
.++.|.+ |+|||++.+.|+.
T Consensus 2 igI~G~s-GSGKTTla~~L~~ 21 (220)
T cd02025 2 IGIAGSV-AVGKSTTARVLQA 21 (220)
T ss_pred EEeeCCC-CCCHHHHHHHHHH
Confidence 4778888 4999999988843
No 334
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=22.96 E-value=46 Score=35.06 Aligned_cols=25 Identities=20% Similarity=0.133 Sum_probs=21.5
Q ss_pred ccccccccccchhhhhcccchhcCCC
Q 022972 226 AGIGGLSEFLGYTSQLCYPFLHISYP 251 (289)
Q Consensus 226 ~~~~G~t~~~Gkt~~l~~l~~~~g~~ 251 (289)
..+.|.. |+|||++.+.||++.||+
T Consensus 4 i~I~G~~-GsGKST~ak~la~~l~~~ 28 (712)
T PRK09518 4 VAIDGPA-GVGKSSVSRALAQYLGYA 28 (712)
T ss_pred EEEECCC-CCCHHHHHHHHHHHhCCc
Confidence 4678998 499999999998777986
No 335
>PF04722 Ssu72: Ssu72-like protein; InterPro: IPR006811 The highly conserved and essential protein Ssu72 has intrinsic phosphatase activity and plays an essential role in the transcription cycle. Ssu72 was originally identified in a yeast genetic screen as enhancer of a defect caused by a mutation in the transcription initiation factor TFIIB []. It binds to TFIIB and is also involved in mRNA elongation. Ssu72 is further involved in both poly(A) dependent and independent termination. It is a subunit of the yeast cleavage and polyadenylation factor (CPF), which is part of the machinery for mRNA 3'-end formation. Ssu72 is also essential for transcription termination of snRNAs [].; GO: 0004721 phosphoprotein phosphatase activity, 0006397 mRNA processing, 0005634 nucleus; PDB: 3O2S_B 3O2Q_E 3FMV_H 3OMW_D 3P9Y_B 3FDF_A 3OMX_A.
Probab=22.73 E-value=1e+02 Score=27.47 Aligned_cols=29 Identities=28% Similarity=0.451 Sum_probs=22.5
Q ss_pred cEEEEcCCC-CchHHHHHHHHHccCCCeeEc
Q 022972 174 DLIVACQKG-LRSLAACELLYNAGYRNLFWV 203 (289)
Q Consensus 174 ~IVvyC~~G-~RS~~aa~~L~~~G~~nV~~L 203 (289)
.+.++|.+. .||..|-..|++.||+ |.-+
T Consensus 3 ~~avVCasN~NRSMEAH~~L~~~G~~-V~Sf 32 (195)
T PF04722_consen 3 RFAVVCASNQNRSMEAHNVLKKAGFN-VRSF 32 (195)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHTT-E-EEEE
T ss_pred eEEEEccCCCCcCHHHHHHHHHCCCc-eEee
Confidence 577889654 4999999999999994 7654
No 336
>cd00115 LMWPc Substituted updates: Aug 22, 2001
Probab=22.73 E-value=70 Score=25.96 Aligned_cols=37 Identities=14% Similarity=0.152 Sum_probs=25.7
Q ss_pred cEEEEcC-CCCchHHHHHHHHHccCC-CeeEccccHHHH
Q 022972 174 DLIVACQ-KGLRSLAACELLYNAGYR-NLFWVQGGLEAA 210 (289)
Q Consensus 174 ~IVvyC~-~G~RS~~aa~~L~~~G~~-nV~~L~GG~~aw 210 (289)
+|++.|. +-.||..+..+++...-+ ++.+...|...+
T Consensus 2 ~iLfvc~~N~~RS~mAEai~~~~~~~~~~~v~SaG~~~~ 40 (141)
T cd00115 2 KVLFVCTGNICRSPMAEAIFRHLAPKLDIEVDSAGTSGW 40 (141)
T ss_pred eEEEEecChhhhhHHHHHHHHHHhhhCCEEEECCCCCCc
Confidence 5888895 455888888888876432 566677776544
No 337
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=22.59 E-value=33 Score=27.12 Aligned_cols=20 Identities=20% Similarity=0.071 Sum_probs=15.6
Q ss_pred ccccccccccchhhhhcccch
Q 022972 226 AGIGGLSEFLGYTSQLCYPFL 246 (289)
Q Consensus 226 ~~~~G~t~~~Gkt~~l~~l~~ 246 (289)
.++.|.+ |+|||.+++.+..
T Consensus 6 i~~~G~~-g~GKttl~~~l~~ 25 (168)
T cd04163 6 VAIVGRP-NVGKSTLLNALVG 25 (168)
T ss_pred EEEECCC-CCCHHHHHHHHhC
Confidence 5677888 4999999988733
No 338
>TIGR03372 putres_am_tran putrescine aminotransferase. Members of this family are putrescine aminotransferase, as found in Escherichia coli, Erwinia carotovora subsp. atroseptica, and closely related species. This pyridoxal phosphate enzyme, as characterized in E. coli, can act also on cadaverine and, more weakly, spermidine.
Probab=22.57 E-value=1.2e+02 Score=30.13 Aligned_cols=54 Identities=17% Similarity=0.206 Sum_probs=36.2
Q ss_pred HHHHHHHHhcCCCCCcEEEEcCCCCchHHHHHHHHHc-----cCCCeeEccccHHHHHh
Q 022972 159 KQFLSKVEEKLPKDTDLIVACQKGLRSLAACELLYNA-----GYRNLFWVQGGLEAAEE 212 (289)
Q Consensus 159 ~~f~~~~~~~l~k~~~IVvyC~~G~RS~~aa~~L~~~-----G~~nV~~L~GG~~aw~~ 212 (289)
.++.+++.+..|.+-..++||++|..+..+|-.|.+. |-+.+-...|+|.+|..
T Consensus 120 ~~lAe~L~~~~p~~~~~v~f~~SGsEA~e~AlklAr~~t~~~gr~~ii~~~~~yHG~t~ 178 (442)
T TIGR03372 120 ALLAKTLAALTPGKLKYSFFCNSGTESVEAALKLAKAYQSPRGKFTFIAASGAFHGKSL 178 (442)
T ss_pred HHHHHHHHHhCCCCcCEEEEeCCchHHHHHHHHHHHHHHhhcCCcEEEEECCCccCCCH
Confidence 3556666644554446788999998877766655543 54457778888888754
No 339
>PF01202 SKI: Shikimate kinase; InterPro: IPR000623 Shikimate kinase (2.7.1.71 from EC) catalyses the fifth step in the biosynthesis of aromatic amino acids from chorismate (the so-called shikimate pathway) []. The enzyme catalyses the following reaction: ATP + shikimate = ADP + shikimate-3-phosphate The protein is found in bacteria (gene aroK or aroL), plants and fungi (where it is part of a multifunctional enzyme that catalyses five consecutive steps in this pathway). In 1994, the 3D structure of shikimate kinase was predicted to be very close to that of adenylate kinase, suggesting a functional similarity as well as an evolutionary relationship []. This prediction has since been confirmed experimentally. The protein is reported to possess an alpha/beta fold, consisting of a central sheet of five parallel beta-strands flanked by alpha-helices. Such a topology is very similar to that of adenylate kinase [].; GO: 0004765 shikimate kinase activity, 0005524 ATP binding; PDB: 3VAA_C 1KO8_B 1KO4_B 1KO1_A 1KOF_A 1KNQ_A 1KO5_A 1KAG_A 2PT5_D 1SHK_A ....
Probab=22.51 E-value=26 Score=29.16 Aligned_cols=18 Identities=11% Similarity=-0.101 Sum_probs=16.3
Q ss_pred ccchhhhhcccchhcCCC
Q 022972 234 FLGYTSQLCYPFLHISYP 251 (289)
Q Consensus 234 ~~Gkt~~l~~l~~~~g~~ 251 (289)
|+|||++-+.||+..|+|
T Consensus 2 GsGKStvg~~lA~~L~~~ 19 (158)
T PF01202_consen 2 GSGKSTVGKLLAKRLGRP 19 (158)
T ss_dssp TSSHHHHHHHHHHHHTSE
T ss_pred CCcHHHHHHHHHHHhCCC
Confidence 589999999998888997
No 340
>PF02879 PGM_PMM_II: Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II; InterPro: IPR005845 The alpha-D-phosphohexomutase superfamily is composed of four related enzymes, each of which catalyses a phosphoryl transfer on their sugar substrates: phosphoglucomutase (PGM), phosphoglucomutase/phosphomannomutase (PGM/PMM), phosphoglucosamine mutase (PNGM), and phosphoacetylglucosamine mutase (PAGM) []. PGM (5.4.2.2 from EC) converts D-glucose 1-phosphate into D-glucose 6-phosphate, and participates in both the breakdown and synthesis of glucose []. PGM/PMM (5.4.2.2 from EC; 5.4.2.8 from EC) are primarily bacterial enzymes that use either glucose or mannose as substrate, participating in the biosynthesis of a variety of carbohydrates such as lipopolysaccharides and alginate [, ]. Both PNGM (5.4.2.3 from EC) and PAGM (5.4.2.10 from EC) are involved in the biosynthesis of UDP-N-acetylglucosamine [, ]. Despite differences in substrate specificity, these enzymes share a similar catalytic mechanism, converting 1-phospho-sugars to 6-phospho-sugars via a biphosphorylated 1,6-phospho-sugar. The active enzyme is phosphorylated at a conserved serine residue and binds one magnesium ion; residues around the active site serine are well conserved among family members. The reaction mechanism involves phosphoryl transfer from the phosphoserine to the substrate to create a biophosphorylated sugar, followed by a phosphoryl transfer from the substrate back to the enzyme []. The structures of PGM and PGM/PMM have been determined, and were found to be very similar in topology. These enzymes are both composed of four domains and a large central active site cleft, where each domain contains residues essential for catalysis and/or substrate recognition. Domain I contains the catalytic phosphoserine, domain II contains a metal-binding loop to coordinate the magnesium ion, domain III contains the sugar-binding loop that recognises the two different binding orientations of the 1- and 6-phospho-sugars, and domain IV contains a phosphate-binding site required for orienting the incoming phospho-sugar substrate. This entry represents domain II found in alpha-D-phosphohexomutase enzymes. This domain has a 3-layer alpha/beta/alpha topology.; GO: 0016868 intramolecular transferase activity, phosphotransferases, 0005975 carbohydrate metabolic process; PDB: 2F7L_A 3PDK_B 1KFQ_B 1KFI_A 1C47_A 1VKL_B 1LXT_A 1JDY_B 3PMG_A 1C4G_B ....
Probab=22.40 E-value=1.8e+02 Score=22.10 Aligned_cols=32 Identities=22% Similarity=0.279 Sum_probs=25.5
Q ss_pred CcEEEEcCCCCchHHHHHHHHHccCCCeeEccc
Q 022972 173 TDLIVACQKGLRSLAACELLYNAGYRNLFWVQG 205 (289)
Q Consensus 173 ~~IVvyC~~G~RS~~aa~~L~~~G~~nV~~L~G 205 (289)
-+|++-|..|.-+..+...|+++|.+ +..+..
T Consensus 22 ~kivvD~~~G~~~~~~~~ll~~lg~~-~~~~n~ 53 (104)
T PF02879_consen 22 LKIVVDCMNGAGSDILPRLLERLGCD-VIELNC 53 (104)
T ss_dssp CEEEEE-TTSTTHHHHHHHHHHTTCE-EEEESS
T ss_pred CEEEEECCCCHHHHHHHHHHHHcCCc-EEEEec
Confidence 37999999999999999999999995 545544
No 341
>PRK04213 GTP-binding protein; Provisional
Probab=22.27 E-value=46 Score=28.24 Aligned_cols=21 Identities=14% Similarity=-0.113 Sum_probs=16.4
Q ss_pred ccccccccccccchhhhhcccc
Q 022972 224 KFAGIGGLSEFLGYTSQLCYPF 245 (289)
Q Consensus 224 ~~~~~~G~t~~~Gkt~~l~~l~ 245 (289)
.-.++-|.+ ++|||.+++++.
T Consensus 10 ~~i~i~G~~-~~GKSsLin~l~ 30 (201)
T PRK04213 10 PEIVFVGRS-NVGKSTLVRELT 30 (201)
T ss_pred CEEEEECCC-CCCHHHHHHHHh
Confidence 345667888 499999999983
No 342
>TIGR03042 PS_II_psbQ_bact photosystem II protein PsbQ. This protein through the member sll1638 from Synechocystis sp. PCC 6803, was shown to be part of the cyanobacteria photosystem II. It is homologous to (but quite diverged from) the chloroplast PsbQ protein, called oxygen-evolving enhancer protein 3 (OEE3). We designate this cyanobacteria protein PsbQ by homology.
Probab=22.27 E-value=2.6e+02 Score=23.57 Aligned_cols=24 Identities=13% Similarity=0.076 Sum_probs=13.2
Q ss_pred HhhhccccCC-CchhhhhhhhHHHH
Q 022972 46 NLGGIRMQAG-GEEYELKQMRDMAA 69 (289)
Q Consensus 46 ~~g~~~~~a~-~~~~~~~~~~~~~~ 69 (289)
+++|+..++. ...+..+++.....
T Consensus 16 Lvsc~~p~~~~p~tysp~~l~~i~~ 40 (142)
T TIGR03042 16 LVSCSGPAAAVPPTYSPAQLAQIQR 40 (142)
T ss_pred HHHcCCCcccCCCCCCHHHHHHHHH
Confidence 6677766554 33455555544443
No 343
>PRK14569 D-alanyl-alanine synthetase A; Provisional
Probab=22.27 E-value=1.7e+02 Score=26.97 Aligned_cols=73 Identities=14% Similarity=0.077 Sum_probs=41.7
Q ss_pred CcEEEEcCCCC--------chHHHHHHHHHccCCCeeEccccHHHHHhCCCCccCCCCCccccccccccccchhhhhccc
Q 022972 173 TDLIVACQKGL--------RSLAACELLYNAGYRNLFWVQGGLEAAEEEDLVREGPQPLKFAGIGGLSEFLGYTSQLCYP 244 (289)
Q Consensus 173 ~~IVvyC~~G~--------RS~~aa~~L~~~G~~nV~~L~GG~~aw~~~gl~~~~~~~~~~~~~~G~t~~~Gkt~~l~~l 244 (289)
.+|.|.|.|.. .+..++..|++.||+ +..++-.-..+... +.. ......+.+++|..|--| .++..+
T Consensus 4 ~~i~vl~gg~s~e~~vsl~s~~~v~~aL~~~g~~-~~~~~~~~~~~~~~-l~~-~~~d~vf~~lhG~~ge~~--~i~~~l 78 (296)
T PRK14569 4 EKIVVLYGGDSPEREVSLKSGKAVLDSLISQGYD-AVGVDASGKELVAK-LLE-LKPDKCFVALHGEDGENG--RVSALL 78 (296)
T ss_pred cEEEEEeCCCCCchHhHHHHHHHHHHHHHHcCCE-EEEEcCCchhHHHH-hhc-cCCCEEEEeCCCCCCCCh--HHHHHH
Confidence 36888886433 244577889999996 65554321222221 111 123456778888875333 355555
Q ss_pred chhcCCC
Q 022972 245 FLHISYP 251 (289)
Q Consensus 245 ~~~~g~~ 251 (289)
+..|.|
T Consensus 79 -e~~gip 84 (296)
T PRK14569 79 -EMLEIK 84 (296)
T ss_pred -HHcCCC
Confidence 666886
No 344
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=22.25 E-value=33 Score=32.97 Aligned_cols=25 Identities=12% Similarity=-0.170 Sum_probs=19.4
Q ss_pred CCccccccccccccchhhhhcccchh
Q 022972 222 PLKFAGIGGLSEFLGYTSQLCYPFLH 247 (289)
Q Consensus 222 ~~~~~~~~G~t~~~Gkt~~l~~l~~~ 247 (289)
......++|.|| +|||++++.++..
T Consensus 161 ~~~nilI~G~tG-SGKTTll~aLl~~ 185 (344)
T PRK13851 161 GRLTMLLCGPTG-SGKTTMSKTLISA 185 (344)
T ss_pred cCCeEEEECCCC-ccHHHHHHHHHcc
Confidence 345677888884 9999999998543
No 345
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=22.19 E-value=37 Score=33.55 Aligned_cols=27 Identities=15% Similarity=0.165 Sum_probs=21.8
Q ss_pred CCCccccccccccccchhhhhcccchhc
Q 022972 221 QPLKFAGIGGLSEFLGYTSQLCYPFLHI 248 (289)
Q Consensus 221 ~~~~~~~~~G~t~~~Gkt~~l~~l~~~~ 248 (289)
.+.+...+-|.|| ||||+-|-+||+.-
T Consensus 201 ~~~~vi~LVGPTG-VGKTTTlAKLAar~ 227 (407)
T COG1419 201 EQKRVIALVGPTG-VGKTTTLAKLAARY 227 (407)
T ss_pred ccCcEEEEECCCC-CcHHHHHHHHHHHH
Confidence 3467889999995 99999999995543
No 346
>PRK11391 etp phosphotyrosine-protein phosphatase; Provisional
Probab=22.11 E-value=80 Score=26.17 Aligned_cols=37 Identities=19% Similarity=0.186 Sum_probs=25.7
Q ss_pred CcEEEEcC-CCCchHHHHHHHHHccCCCeeEccccHHHH
Q 022972 173 TDLIVACQ-KGLRSLAACELLYNAGYRNLFWVQGGLEAA 210 (289)
Q Consensus 173 ~~IVvyC~-~G~RS~~aa~~L~~~G~~nV~~L~GG~~aw 210 (289)
++|+++|. +-.||..|..+++...- ++.+...|..+|
T Consensus 3 ~~ILfVC~gN~cRSpmAEa~~~~~~~-~~~v~SaG~~~~ 40 (144)
T PRK11391 3 NSILVVCTGNICRSPIGERLLRKRLP-GVKVKSAGVHGL 40 (144)
T ss_pred CeEEEEcCCcHhHHHHHHHHHHHhcC-CeEEEcccccCC
Confidence 47899995 44599999999987652 355566666544
No 347
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=22.11 E-value=34 Score=32.63 Aligned_cols=23 Identities=22% Similarity=0.008 Sum_probs=18.1
Q ss_pred Cccccccccccccchhhhhcccch
Q 022972 223 LKFAGIGGLSEFLGYTSQLCYPFL 246 (289)
Q Consensus 223 ~~~~~~~G~t~~~Gkt~~l~~l~~ 246 (289)
.....++|.|| +|||+.++.|..
T Consensus 160 ~~nili~G~tg-SGKTTll~aL~~ 182 (332)
T PRK13900 160 KKNIIISGGTS-TGKTTFTNAALR 182 (332)
T ss_pred CCcEEEECCCC-CCHHHHHHHHHh
Confidence 45567888884 999999999843
No 348
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=22.07 E-value=34 Score=27.21 Aligned_cols=18 Identities=22% Similarity=0.228 Sum_probs=15.0
Q ss_pred cccccccccchhhhhcccc
Q 022972 227 GIGGLSEFLGYTSQLCYPF 245 (289)
Q Consensus 227 ~~~G~t~~~Gkt~~l~~l~ 245 (289)
++.|.+| +|||.+++.++
T Consensus 3 ~l~G~~g-~GKTtL~~~l~ 20 (170)
T cd01876 3 AFAGRSN-VGKSSLINALT 20 (170)
T ss_pred EEEcCCC-CCHHHHHHHHh
Confidence 5678884 99999999994
No 349
>PRK08384 thiamine biosynthesis protein ThiI; Provisional
Probab=22.06 E-value=1.1e+02 Score=29.79 Aligned_cols=27 Identities=19% Similarity=0.279 Sum_probs=23.1
Q ss_pred CCcEEEEcCCCCchHHHHHHHHHccCC
Q 022972 172 DTDLIVACQKGLRSLAACELLYNAGYR 198 (289)
Q Consensus 172 ~~~IVvyC~~G~RS~~aa~~L~~~G~~ 198 (289)
+.++++.-.||..|..+++.|.+.|++
T Consensus 180 ~gkvlvllSGGiDSpVAa~ll~krG~~ 206 (381)
T PRK08384 180 QGKVVALLSGGIDSPVAAFLMMKRGVE 206 (381)
T ss_pred CCcEEEEEeCChHHHHHHHHHHHcCCe
Confidence 346777778999999999999999996
No 350
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=21.92 E-value=37 Score=32.74 Aligned_cols=24 Identities=17% Similarity=0.045 Sum_probs=19.9
Q ss_pred CCccccccccccccchhhhhcccch
Q 022972 222 PLKFAGIGGLSEFLGYTSQLCYPFL 246 (289)
Q Consensus 222 ~~~~~~~~G~t~~~Gkt~~l~~l~~ 246 (289)
+-....++|.|| +|||+.++.+..
T Consensus 133 ~~glilI~GpTG-SGKTTtL~aLl~ 156 (358)
T TIGR02524 133 QEGIVFITGATG-SGKSTLLAAIIR 156 (358)
T ss_pred cCCEEEEECCCC-CCHHHHHHHHHH
Confidence 457889999995 999999999743
No 351
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=21.90 E-value=39 Score=28.94 Aligned_cols=25 Identities=16% Similarity=-0.182 Sum_probs=19.4
Q ss_pred cccccccccccchhhhhcccchhcCC
Q 022972 225 FAGIGGLSEFLGYTSQLCYPFLHISY 250 (289)
Q Consensus 225 ~~~~~G~t~~~Gkt~~l~~l~~~~g~ 250 (289)
..++.|.+| .|||++++.++...+.
T Consensus 5 ~i~l~G~sG-sGKSTl~~~la~~l~~ 29 (176)
T PRK09825 5 SYILMGVSG-SGKSLIGSKIAALFSA 29 (176)
T ss_pred EEEEECCCC-CCHHHHHHHHHHhcCC
Confidence 457889994 9999999998554444
No 352
>PLN02347 GMP synthetase
Probab=21.87 E-value=1.9e+02 Score=29.67 Aligned_cols=51 Identities=24% Similarity=0.338 Sum_probs=38.0
Q ss_pred ccHHHHHHHHhcCCCCCcEEEEcCCCCchHHHHHHHHH-ccCCCee--EccccHH
Q 022972 157 YNKQFLSKVEEKLPKDTDLIVACQKGLRSLAACELLYN-AGYRNLF--WVQGGLE 208 (289)
Q Consensus 157 ~~~~f~~~~~~~l~k~~~IVvyC~~G~RS~~aa~~L~~-~G~~nV~--~L~GG~~ 208 (289)
...+.++++.+.+.+++++++.-.||..|..++.++.+ .|. ++. .++.|+.
T Consensus 214 ~~~~~i~~i~~~~~~~~~vvvalSGGVDSsvla~l~~~alG~-~v~av~id~g~~ 267 (536)
T PLN02347 214 VLEEQIELIKATVGPDEHVICALSGGVDSTVAATLVHKAIGD-RLHCVFVDNGLL 267 (536)
T ss_pred HHHHHHHHHHHHhccCCeEEEEecCChhHHHHHHHHHHHhCC-cEEEEEEeCCCC
Confidence 44566677776677677888888999999999999999 685 454 5566653
No 353
>PF14617 CMS1: U3-containing 90S pre-ribosomal complex subunit
Probab=21.79 E-value=1.4e+02 Score=27.60 Aligned_cols=41 Identities=22% Similarity=0.260 Sum_probs=28.9
Q ss_pred CcccHHHHHHHHhc--------CCCCCc-EEEEcCCCCchHHHHHHHHHc
Q 022972 155 LSYNKQFLSKVEEK--------LPKDTD-LIVACQKGLRSLAACELLYNA 195 (289)
Q Consensus 155 ~~~~~~f~~~~~~~--------l~k~~~-IVvyC~~G~RS~~aa~~L~~~ 195 (289)
...++.|++++... .+++.| ++|+|.++.|+..+...|+..
T Consensus 100 l~nL~~fLk~~~~~~~~l~~~~~~~gsP~~lvvs~SalRa~dl~R~l~~~ 149 (252)
T PF14617_consen 100 LDNLPSFLKQFSPKKKKLSKKPKEKGSPHVLVVSSSALRAADLIRALRSF 149 (252)
T ss_pred cchHHHHHHHhccchhhhhhcccCCCCCEEEEEcchHHHHHHHHHHHHhh
Confidence 45567777655432 123344 889999999999999999876
No 354
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=21.76 E-value=37 Score=36.77 Aligned_cols=23 Identities=22% Similarity=-0.084 Sum_probs=19.9
Q ss_pred CCCccccccccccccchhhhhccc
Q 022972 221 QPLKFAGIGGLSEFLGYTSQLCYP 244 (289)
Q Consensus 221 ~~~~~~~~~G~t~~~Gkt~~l~~l 244 (289)
.+..+..|+|.|| .|||+|+.+.
T Consensus 23 f~~gi~lI~G~nG-sGKSSIldAI 45 (908)
T COG0419 23 FDSGIFLIVGPNG-AGKSSILDAI 45 (908)
T ss_pred CCCCeEEEECCCC-CcHHHHHHHH
Confidence 4667789999995 9999999987
No 355
>PF06564 YhjQ: YhjQ protein; InterPro: IPR017746 The YhjQ protein is encoded immediately upstream of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae, and in several species is clearly part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm [], based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=21.75 E-value=43 Score=30.72 Aligned_cols=21 Identities=19% Similarity=0.004 Sum_probs=17.1
Q ss_pred ccccccccccccchhhhhccc
Q 022972 224 KFAGIGGLSEFLGYTSQLCYP 244 (289)
Q Consensus 224 ~~~~~~G~t~~~Gkt~~l~~l 244 (289)
+...+.|..||+|||++-=.|
T Consensus 2 ~~iai~s~kGGvG~TTltAnL 22 (243)
T PF06564_consen 2 KVIAIVSPKGGVGKTTLTANL 22 (243)
T ss_pred cEEEEecCCCCCCHHHHHHHH
Confidence 456788999999999987665
No 356
>PRK13477 bifunctional pantoate ligase/cytidylate kinase; Provisional
Probab=21.68 E-value=40 Score=34.32 Aligned_cols=27 Identities=11% Similarity=-0.012 Sum_probs=22.9
Q ss_pred ccccccccccccchhhhhcccchhcCCC
Q 022972 224 KFAGIGGLSEFLGYTSQLCYPFLHISYP 251 (289)
Q Consensus 224 ~~~~~~G~t~~~Gkt~~l~~l~~~~g~~ 251 (289)
....+.|.+ |+|||++.+.+|++.|+.
T Consensus 285 ~ii~i~G~s-gsGKst~a~~la~~l~~~ 311 (512)
T PRK13477 285 PIIAIDGPA-GAGKSTVTRAVAKKLGLL 311 (512)
T ss_pred cEEEEECCC-CCCHHHHHHHHHHHcCCe
Confidence 456788998 499999999998888886
No 357
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=21.64 E-value=35 Score=31.99 Aligned_cols=23 Identities=17% Similarity=-0.054 Sum_probs=18.1
Q ss_pred ccccccccccccchhhhhcccchh
Q 022972 224 KFAGIGGLSEFLGYTSQLCYPFLH 247 (289)
Q Consensus 224 ~~~~~~G~t~~~Gkt~~l~~l~~~ 247 (289)
....++|.|| +|||++++.|+..
T Consensus 133 ~~ilI~G~tG-SGKTTll~al~~~ 155 (299)
T TIGR02782 133 KNILVVGGTG-SGKTTLANALLAE 155 (299)
T ss_pred CeEEEECCCC-CCHHHHHHHHHHH
Confidence 4557888884 9999999998433
No 358
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=21.63 E-value=35 Score=27.02 Aligned_cols=23 Identities=22% Similarity=0.137 Sum_probs=18.2
Q ss_pred CCccccccccccccchhhhhcccc
Q 022972 222 PLKFAGIGGLSEFLGYTSQLCYPF 245 (289)
Q Consensus 222 ~~~~~~~~G~t~~~Gkt~~l~~l~ 245 (289)
+-...++.|..| .|||.+++.++
T Consensus 10 ~g~~~~i~G~nG-sGKStLl~~l~ 32 (137)
T PF00005_consen 10 PGEIVAIVGPNG-SGKSTLLKALA 32 (137)
T ss_dssp TTSEEEEEESTT-SSHHHHHHHHT
T ss_pred CCCEEEEEccCC-Cccccceeeec
Confidence 345667888884 99999999983
No 359
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=21.62 E-value=48 Score=32.15 Aligned_cols=29 Identities=17% Similarity=-0.111 Sum_probs=23.2
Q ss_pred CCccccccccccccchhhhhcccchhcCCC
Q 022972 222 PLKFAGIGGLSEFLGYTSQLCYPFLHISYP 251 (289)
Q Consensus 222 ~~~~~~~~G~t~~~Gkt~~l~~l~~~~g~~ 251 (289)
+.+-..++|.+| +|||.+.|.+|.+.+.+
T Consensus 164 ~p~gvLL~GppG-tGKT~lAkaia~~~~~~ 192 (389)
T PRK03992 164 PPKGVLLYGPPG-TGKTLLAKAVAHETNAT 192 (389)
T ss_pred CCCceEEECCCC-CChHHHHHHHHHHhCCC
Confidence 345567889995 99999999997777775
No 360
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=21.59 E-value=39 Score=29.48 Aligned_cols=25 Identities=20% Similarity=0.032 Sum_probs=18.6
Q ss_pred ccccccccccchhhhhcccc---hhcCCC
Q 022972 226 AGIGGLSEFLGYTSQLCYPF---LHISYP 251 (289)
Q Consensus 226 ~~~~G~t~~~Gkt~~l~~l~---~~~g~~ 251 (289)
..++|.- |+|||+++.+++ +++||.
T Consensus 8 i~ITG~P-GvGKtTl~~ki~e~L~~~g~k 35 (179)
T COG1618 8 IFITGRP-GVGKTTLVLKIAEKLREKGYK 35 (179)
T ss_pred EEEeCCC-CccHHHHHHHHHHHHHhcCce
Confidence 4688888 599999998863 345773
No 361
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=21.59 E-value=40 Score=29.57 Aligned_cols=23 Identities=17% Similarity=0.013 Sum_probs=17.8
Q ss_pred ccccccccccccchhhhhcccchh
Q 022972 224 KFAGIGGLSEFLGYTSQLCYPFLH 247 (289)
Q Consensus 224 ~~~~~~G~t~~~Gkt~~l~~l~~~ 247 (289)
....++|.+ |+|||.+++.++.+
T Consensus 43 ~~~~l~G~~-G~GKT~La~ai~~~ 65 (227)
T PRK08903 43 RFFYLWGEA-GSGRSHLLQALVAD 65 (227)
T ss_pred CeEEEECCC-CCCHHHHHHHHHHH
Confidence 345788888 49999999998443
No 362
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=21.58 E-value=45 Score=31.26 Aligned_cols=27 Identities=15% Similarity=-0.059 Sum_probs=21.4
Q ss_pred ccccccccccccchhhhhcccchhcCCC
Q 022972 224 KFAGIGGLSEFLGYTSQLCYPFLHISYP 251 (289)
Q Consensus 224 ~~~~~~G~t~~~Gkt~~l~~l~~~~g~~ 251 (289)
....++|.. |+|||.+.+.+|.+.|.+
T Consensus 52 ~~~ll~Gpp-G~GKT~la~~ia~~l~~~ 78 (328)
T PRK00080 52 DHVLLYGPP-GLGKTTLANIIANEMGVN 78 (328)
T ss_pred CcEEEECCC-CccHHHHHHHHHHHhCCC
Confidence 445788888 499999999997776664
No 363
>PRK07933 thymidylate kinase; Validated
Probab=21.22 E-value=37 Score=30.02 Aligned_cols=21 Identities=14% Similarity=-0.023 Sum_probs=16.8
Q ss_pred cccccccccccchhhhhcccch
Q 022972 225 FAGIGGLSEFLGYTSQLCYPFL 246 (289)
Q Consensus 225 ~~~~~G~t~~~Gkt~~l~~l~~ 246 (289)
+.++-|.. |+|||++.+.|++
T Consensus 2 ~IviEG~d-GsGKST~~~~L~~ 22 (213)
T PRK07933 2 LIAIEGVD-GAGKRTLTEALRA 22 (213)
T ss_pred EEEEEcCC-CCCHHHHHHHHHH
Confidence 56778888 4999999998843
No 364
>cd01712 ThiI ThiI is required for thiazole synthesis in the thiamine biosynthesis pathway. It belongs to the Adenosine Nucleotide Hydrolysis suoerfamily and predicted to bind to Adenosine nucleotide.
Probab=21.17 E-value=1.2e+02 Score=25.55 Aligned_cols=32 Identities=22% Similarity=0.232 Sum_probs=23.1
Q ss_pred EEEEcCCCCchHHHHHHHHHccCCCee--EccccH
Q 022972 175 LIVACQKGLRSLAACELLYNAGYRNLF--WVQGGL 207 (289)
Q Consensus 175 IVvyC~~G~RS~~aa~~L~~~G~~nV~--~L~GG~ 207 (289)
++|...||..|..+++.|.+.|++ +. .++.|+
T Consensus 2 vlv~~SGG~DS~~la~ll~~~g~~-v~av~~d~g~ 35 (177)
T cd01712 2 ALALLSGGIDSPVAAWLLMKRGIE-VDALHFNSGP 35 (177)
T ss_pred EEEEecCChhHHHHHHHHHHcCCe-EEEEEEeCCC
Confidence 566668888899999988888885 43 444444
No 365
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=21.10 E-value=39 Score=27.94 Aligned_cols=22 Identities=18% Similarity=-0.046 Sum_probs=17.2
Q ss_pred ccccccccccchhhhhcccchhc
Q 022972 226 AGIGGLSEFLGYTSQLCYPFLHI 248 (289)
Q Consensus 226 ~~~~G~t~~~Gkt~~l~~l~~~~ 248 (289)
..++|.+ |+|||.+.+.|++..
T Consensus 2 i~i~G~~-GsGKSTla~~L~~~l 23 (149)
T cd02027 2 IWLTGLS-GSGKSTIARALEEKL 23 (149)
T ss_pred EEEEcCC-CCCHHHHHHHHHHHH
Confidence 3567888 499999999985554
No 366
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=21.06 E-value=41 Score=31.13 Aligned_cols=23 Identities=17% Similarity=0.021 Sum_probs=18.3
Q ss_pred Cccccccccccccchhhhhcccch
Q 022972 223 LKFAGIGGLSEFLGYTSQLCYPFL 246 (289)
Q Consensus 223 ~~~~~~~G~t~~~Gkt~~l~~l~~ 246 (289)
.....+.|.| |+|||+.+..||.
T Consensus 194 ~~vi~~vGpt-GvGKTTt~~kLa~ 216 (282)
T TIGR03499 194 GGVIALVGPT-GVGKTTTLAKLAA 216 (282)
T ss_pred CeEEEEECCC-CCCHHHHHHHHHH
Confidence 3466788998 5999999998754
No 367
>COG5564 Predicted TIM-barrel enzyme, possibly a dioxygenase [General function prediction only]
Probab=21.02 E-value=1.3e+02 Score=27.59 Aligned_cols=48 Identities=17% Similarity=0.061 Sum_probs=36.7
Q ss_pred HHHHhCCCCccCCCCCccccccccccccchhhhhcccchhcCCCCcchhH
Q 022972 208 EAAEEEDLVREGPQPLKFAGIGGLSEFLGYTSQLCYPFLHISYPSTSFSK 257 (289)
Q Consensus 208 ~aw~~~gl~~~~~~~~~~~~~~G~t~~~Gkt~~l~~l~~~~g~~~~~~~~ 257 (289)
....++.+|+.. ....++|..|++-|.=..++|+.| +..|++++++|=
T Consensus 75 ld~a~e~lp~~r-~tpv~aGv~~~DPf~~~~~~L~~L-~~~gf~gV~NFP 122 (276)
T COG5564 75 LDMAREVLPVVR-QTPVLAGVNGTDPFCRMVDFLKEL-KTAGFSGVQNFP 122 (276)
T ss_pred HHHHHhhCCccc-cCcceecccCCCcchhHHHHHHHH-HhcCCcccccCC
Confidence 344556777763 344688999999899999999999 888998777653
No 368
>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=21.01 E-value=37 Score=30.15 Aligned_cols=21 Identities=19% Similarity=0.023 Sum_probs=17.9
Q ss_pred Cccccccccccccchhhhhccc
Q 022972 223 LKFAGIGGLSEFLGYTSQLCYP 244 (289)
Q Consensus 223 ~~~~~~~G~t~~~Gkt~~l~~l 244 (289)
-...+++|.|| .||+++||.|
T Consensus 37 GECvvL~G~SG-~GKStllr~L 57 (235)
T COG4778 37 GECVVLHGPSG-SGKSTLLRSL 57 (235)
T ss_pred ccEEEeeCCCC-CcHHHHHHHH
Confidence 34568999995 9999999988
No 369
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=20.98 E-value=1.4e+02 Score=30.20 Aligned_cols=34 Identities=21% Similarity=0.253 Sum_probs=30.7
Q ss_pred cEEEEcCCCCchHHHHHHHHHccCCCeeEccccHH
Q 022972 174 DLIVACQKGLRSLAACELLYNAGYRNLFWVQGGLE 208 (289)
Q Consensus 174 ~IVvyC~~G~RS~~aa~~L~~~G~~nV~~L~GG~~ 208 (289)
.+||+|++-.+...+++.|...||+ +..|.|++.
T Consensus 275 ~~IVF~~tk~~~~~l~~~l~~~g~~-~~~lhG~l~ 308 (513)
T COG0513 275 RVIVFVRTKRLVEELAESLRKRGFK-VAALHGDLP 308 (513)
T ss_pred eEEEEeCcHHHHHHHHHHHHHCCCe-EEEecCCCC
Confidence 5999999988899999999999995 999999964
No 370
>cd05566 PTS_IIB_galactitol PTS_IIB_galactitol: subunit IIB of enzyme II (EII) of the galactitol-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In this system, EII is a galactitol-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain that are expressed on three distinct polypeptide chains, in contrast to other PTS sugar transporters. The three genes encoding these subunits (gatA, gatB, and gatC) comprise the gatCBA operon. Galactitol PTS permease takes up exogenous galactitol, releasing the phosphate ester into the cytoplasm in preparation for oxidation and further metabolism via a modified glycolytic pathway called the tagatose-6-phosphate glycolytic pathway. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include galactitol, chitobiose/lichenan, ascorbate, lactose, mannitol, fructose, and
Probab=20.94 E-value=1.1e+02 Score=22.55 Aligned_cols=25 Identities=28% Similarity=0.570 Sum_probs=16.4
Q ss_pred cEEEEcCCCCchH-HHHH----HHHHccCC
Q 022972 174 DLIVACQKGLRSL-AACE----LLYNAGYR 198 (289)
Q Consensus 174 ~IVvyC~~G~RS~-~aa~----~L~~~G~~ 198 (289)
+++++|.+|+.+. .+.. .+.+.++.
T Consensus 2 ~ilivC~~G~~tS~~l~~~i~~~~~~~~i~ 31 (89)
T cd05566 2 KILVACGTGVATSTVVASKVKELLKENGID 31 (89)
T ss_pred EEEEECCCCccHHHHHHHHHHHHHHHCCCc
Confidence 6899999999644 4444 44455663
No 371
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=20.83 E-value=33 Score=30.98 Aligned_cols=23 Identities=22% Similarity=-0.005 Sum_probs=18.4
Q ss_pred Cccccccccccccchhhhhcccch
Q 022972 223 LKFAGIGGLSEFLGYTSQLCYPFL 246 (289)
Q Consensus 223 ~~~~~~~G~t~~~Gkt~~l~~l~~ 246 (289)
.....++|.|| +|||+.++.++.
T Consensus 127 ~~~ili~G~tG-SGKTT~l~all~ 149 (270)
T PF00437_consen 127 RGNILISGPTG-SGKTTLLNALLE 149 (270)
T ss_dssp TEEEEEEESTT-SSHHHHHHHHHH
T ss_pred ceEEEEECCCc-cccchHHHHHhh
Confidence 46667888884 999999998843
No 372
>PRK13107 preprotein translocase subunit SecA; Reviewed
Probab=20.68 E-value=1.2e+02 Score=33.24 Aligned_cols=52 Identities=8% Similarity=0.061 Sum_probs=40.8
Q ss_pred HHHHHHHhcCCCCCcEEEEcCCCCchHHHHHHHHHccCCCeeEccccHHHHHh
Q 022972 160 QFLSKVEEKLPKDTDLIVACQKGLRSLAACELLYNAGYRNLFWVQGGLEAAEE 212 (289)
Q Consensus 160 ~f~~~~~~~l~k~~~IVvyC~~G~RS~~aa~~L~~~G~~nV~~L~GG~~aw~~ 212 (289)
...+++.+...+++|++|.|.+-..|..++..|...|++ ...|.+.......
T Consensus 437 Aii~ei~~~~~~GrpVLV~t~sv~~se~ls~~L~~~gi~-~~vLnak~~~~Ea 488 (908)
T PRK13107 437 AIIKDIKDCRERGQPVLVGTVSIEQSELLARLMVKEKIP-HEVLNAKFHEREA 488 (908)
T ss_pred HHHHHHHHHHHcCCCEEEEeCcHHHHHHHHHHHHHCCCC-eEeccCcccHHHH
Confidence 444444444568899999999988999999999999996 7789888765543
No 373
>PF03610 EIIA-man: PTS system fructose IIA component; InterPro: IPR004701 The phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS) [, ] is a major carbohydrate transport system in bacteria. The PTS catalyses the phosphorylation of incoming sugar substrates and coupled with translocation across the cell membrane, makes the PTS a link between the uptake and metabolism of sugars. The general mechanism of the PTS is the following: a phosphoryl group from phosphoenolpyruvate (PEP) is transferred via a signal transduction pathway, to enzyme I (EI) which in turn transfers it to a phosphoryl carrier, the histidine protein (HPr). Phospho-HPr then transfers the phosphoryl group to a sugar-specific permease, a membrane-bound complex known as enzyme 2 (EII), which transports the sugar to the cell. EII consists of at least three structurally distinct domains IIA, IIB and IIC []. These can either be fused together in a single polypeptide chain or exist as two or three interactive chains, formerly called enzymes II (EII) and III (EIII). The first domain (IIA or EIIA) carries the first permease-specific phosphorylation site, a histidine which is phosphorylated by phospho-HPr. The second domain (IIB or EIIB) is phosphorylated by phospho-IIA on a cysteinyl or histidyl residue, depending on the sugar transported. Finally, the phosphoryl group is transferred from the IIB domain to the sugar substrate concomitantly with the sugar uptake processed by the IIC domain. This third domain (IIC or EIIC) forms the translocation channel and the specific substrate-binding site. An additional transmembrane domain IID, homologous to IIC, can be found in some PTSs, e.g. for mannose [, , , ]. The Man family is unique in several respects among PTS permease families. It is the only PTS family in which members possess a IID protein. It is the only PTS family in which the IIB constituent is phosphorylated on a histidyl rather than a cysteyl residue. Its permease members exhibit broad specificity for a range of sugars, rather than being specific for just one or a few sugars. The mannose permease of Escherichia coli, for example, can transport and phosphorylate glucose, mannose, fructose, glucosamine, N-acetylglucosamine, and other sugars. Other members of this can transport sorbose, fructose and N-acetylglucosamine. This family is specific for IIA and IIB components.; GO: 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system, 0016021 integral to membrane; PDB: 3GDW_B 2JZN_A 1VSQ_A 2JZO_B 1VRC_A 1PDO_A 3GX1_A 3B48_B 3BED_B 3IPR_C ....
Probab=20.59 E-value=3.9e+02 Score=20.77 Aligned_cols=37 Identities=22% Similarity=0.281 Sum_probs=21.0
Q ss_pred hcCCCCCcEEEEcC--CCCchHHHHHHHHHccCCCeeEccc
Q 022972 167 EKLPKDTDLIVACQ--KGLRSLAACELLYNAGYRNLFWVQG 205 (289)
Q Consensus 167 ~~l~k~~~IVvyC~--~G~RS~~aa~~L~~~G~~nV~~L~G 205 (289)
+.+++++.+++.|+ +|.-...++..+ ..+++++.+.|
T Consensus 52 ~~~~~~~~vlil~Dl~ggsp~n~a~~~~--~~~~~~~vi~G 90 (116)
T PF03610_consen 52 EELDEGDGVLILTDLGGGSPFNEAARLL--LDKPNIRVISG 90 (116)
T ss_dssp HHCCTTSEEEEEESSTTSHHHHHHHHHH--CTSTTEEEEES
T ss_pred HhccCCCcEEEEeeCCCCccchHHHHHh--ccCCCEEEEec
Confidence 45677888999997 333333333333 34555655554
No 374
>PRK06620 hypothetical protein; Validated
Probab=20.47 E-value=45 Score=29.59 Aligned_cols=25 Identities=20% Similarity=-0.281 Sum_probs=18.9
Q ss_pred ccccccccccccchhhhhcccchhcC
Q 022972 224 KFAGIGGLSEFLGYTSQLCYPFLHIS 249 (289)
Q Consensus 224 ~~~~~~G~t~~~Gkt~~l~~l~~~~g 249 (289)
....++|.+ |+|||.+++..++.-+
T Consensus 45 ~~l~l~Gp~-G~GKThLl~a~~~~~~ 69 (214)
T PRK06620 45 FTLLIKGPS-SSGKTYLTKIWQNLSN 69 (214)
T ss_pred ceEEEECCC-CCCHHHHHHHHHhccC
Confidence 556888888 4999999998743333
No 375
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=20.44 E-value=38 Score=26.64 Aligned_cols=19 Identities=21% Similarity=0.011 Sum_probs=14.9
Q ss_pred cccccccccchhhhhcccch
Q 022972 227 GIGGLSEFLGYTSQLCYPFL 246 (289)
Q Consensus 227 ~~~G~t~~~Gkt~~l~~l~~ 246 (289)
++-|.. ++|||.+++.+..
T Consensus 3 ~i~G~~-~~GKssl~~~l~~ 21 (159)
T cd04159 3 TLVGLQ-NSGKTTLVNVIAG 21 (159)
T ss_pred EEEcCC-CCCHHHHHHHHcc
Confidence 456777 4999999999933
No 376
>COG5350 Predicted protein tyrosine phosphatase [General function prediction only]
Probab=20.34 E-value=88 Score=27.00 Aligned_cols=24 Identities=33% Similarity=0.625 Sum_probs=18.8
Q ss_pred cCCCCCcEEEEcCCCC-chHHHHHH
Q 022972 168 KLPKDTDLIVACQKGL-RSLAACEL 191 (289)
Q Consensus 168 ~l~k~~~IVvyC~~G~-RS~~aa~~ 191 (289)
+.|..+++++.|.-|. ||..++..
T Consensus 89 ~wp~~apllIHC~aGISRStA~A~i 113 (172)
T COG5350 89 EWPRFAPLLIHCYAGISRSTAAALI 113 (172)
T ss_pred cCccccceeeeeccccccchHHHHH
Confidence 5678889999997555 88877765
No 377
>COG4087 Soluble P-type ATPase [General function prediction only]
Probab=20.33 E-value=1.2e+02 Score=25.53 Aligned_cols=95 Identities=18% Similarity=0.165 Sum_probs=56.3
Q ss_pred EEEEcCCCCchHHHHHHHHHccCCCeeEccccHHHHHhCCCCccCCCCCccccccccccccchhhhhcccc--------h
Q 022972 175 LIVACQKGLRSLAACELLYNAGYRNLFWVQGGLEAAEEEDLVREGPQPLKFAGIGGLSEFLGYTSQLCYPF--------L 246 (289)
Q Consensus 175 IVvyC~~G~RS~~aa~~L~~~G~~nV~~L~GG~~aw~~~gl~~~~~~~~~~~~~~G~t~~~Gkt~~l~~l~--------~ 246 (289)
|=+|-.+|.|-....+.+...|.+ +....-|-+.-.+..+-.+-..+....++-|. |-+|+|---+ +
T Consensus 46 V~i~IASgDr~gsl~~lae~~gi~-~~rv~a~a~~e~K~~ii~eLkk~~~k~vmVGn----GaND~laLr~ADlGI~tiq 120 (152)
T COG4087 46 VDIYIASGDRKGSLVQLAEFVGIP-VERVFAGADPEMKAKIIRELKKRYEKVVMVGN----GANDILALREADLGICTIQ 120 (152)
T ss_pred heEEEecCCcchHHHHHHHHcCCc-eeeeecccCHHHHHHHHHHhcCCCcEEEEecC----CcchHHHhhhcccceEEec
Confidence 456678888988899999999996 77665555444443222221225555566565 6777553321 3
Q ss_pred hcCCC-CcchhHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhh
Q 022972 247 HISYP-STSFSKMTYVIIHAMDSLYVGNLRNWWNILEIIKDI 287 (289)
Q Consensus 247 ~~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (289)
.+|.| |+..++-++ -..+..++++.+|.
T Consensus 121 ~e~v~~r~l~~ADvv-------------ik~i~e~ldl~~~~ 149 (152)
T COG4087 121 QEGVPERLLLTADVV-------------LKEIAEILDLLKDT 149 (152)
T ss_pred cCCcchHHHhhchhh-------------hhhHHHHHHHhhcc
Confidence 45666 554443332 25666777777664
No 378
>PF03054 tRNA_Me_trans: tRNA methyl transferase; InterPro: IPR004506 tRNA-specific 2-thiouridylase catalyzes the 2-thiolation of uridine at the wobble position (U34) of tRNA, leading to the formation of s(2)U34.; GO: 0016740 transferase activity, 0008033 tRNA processing, 0005737 cytoplasm; PDB: 2DET_A 2DER_A 2DEU_A 2HMA_A.
Probab=20.32 E-value=81 Score=30.56 Aligned_cols=27 Identities=33% Similarity=0.541 Sum_probs=20.3
Q ss_pred cEEEEcCCCCchHHHHHHHHHccCCCee
Q 022972 174 DLIVACQKGLRSLAACELLYNAGYRNLF 201 (289)
Q Consensus 174 ~IVvyC~~G~RS~~aa~~L~~~G~~nV~ 201 (289)
+|+|--.||..|..+|.+|++.||+ |.
T Consensus 2 kV~vamSGGVDSsvaA~LLk~~G~~-V~ 28 (356)
T PF03054_consen 2 KVLVAMSGGVDSSVAAALLKEQGYD-VI 28 (356)
T ss_dssp EEEEE--SSHHHHHHHHHHHHCT-E-EE
T ss_pred eEEEEccCCHHHHHHHHHHHhhccc-ce
Confidence 5666668889999999999999996 53
No 379
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=20.20 E-value=1.4e+02 Score=29.65 Aligned_cols=37 Identities=27% Similarity=0.246 Sum_probs=31.6
Q ss_pred CCCcEEEEcCCCCchHHHHHHHHHccCCCeeEccccHH
Q 022972 171 KDTDLIVACQKGLRSLAACELLYNAGYRNLFWVQGGLE 208 (289)
Q Consensus 171 k~~~IVvyC~~G~RS~~aa~~L~~~G~~nV~~L~GG~~ 208 (289)
+++..+|||++-..+..++..|+..|++ +..+.||+.
T Consensus 225 ~~~~~IIF~~s~~~~e~la~~L~~~g~~-~~~~H~~l~ 261 (470)
T TIGR00614 225 KGKSGIIYCPSRKKSEQVTASLQNLGIA-AGAYHAGLE 261 (470)
T ss_pred CCCceEEEECcHHHHHHHHHHHHhcCCC-eeEeeCCCC
Confidence 4566799999888899999999999995 888888864
No 380
>COG0482 TrmU Predicted tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain [Translation, ribosomal structure and biogenesis]
Probab=20.14 E-value=1.1e+02 Score=29.72 Aligned_cols=29 Identities=28% Similarity=0.466 Sum_probs=24.5
Q ss_pred CCcEEEEcCCCCchHHHHHHHHHccCCCee
Q 022972 172 DTDLIVACQKGLRSLAACELLYNAGYRNLF 201 (289)
Q Consensus 172 ~~~IVvyC~~G~RS~~aa~~L~~~G~~nV~ 201 (289)
..+|++--.||..|+.+|.+|.+.||+ |.
T Consensus 3 ~~kV~v~mSGGVDSSVaA~lLk~QGye-Vi 31 (356)
T COG0482 3 KKKVLVGMSGGVDSSVAAYLLKEQGYE-VI 31 (356)
T ss_pred CcEEEEEccCCHHHHHHHHHHHHcCCe-EE
Confidence 356777778999999999999999996 64
No 381
>KOG1404 consensus Alanine-glyoxylate aminotransferase AGT2 [Amino acid transport and metabolism]
Probab=20.11 E-value=2.4e+02 Score=27.97 Aligned_cols=41 Identities=12% Similarity=0.099 Sum_probs=34.2
Q ss_pred CcccHHHHHHHHhcCCCCCcEEEEcCCCCchHHHHHHHHHc
Q 022972 155 LSYNKQFLSKVEEKLPKDTDLIVACQKGLRSLAACELLYNA 195 (289)
Q Consensus 155 ~~~~~~f~~~~~~~l~k~~~IVvyC~~G~RS~~aa~~L~~~ 195 (289)
..+..++.+.+.+++|.+.+++++-++|..+..+|-.|.+.
T Consensus 91 ~~pi~~~Ae~L~s~~P~~l~~vfF~nsGsEANelal~mar~ 131 (442)
T KOG1404|consen 91 NPPIHDLAEALVSKLPGDLKVVFFVNSGSEANELALKMARL 131 (442)
T ss_pred CCcHHHHHHHHHHhCCCCceEEEEecCCchHHHHHHHHHHH
Confidence 34667899999989999989999999999888888777765
No 382
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=20.06 E-value=2e+02 Score=24.04 Aligned_cols=45 Identities=16% Similarity=0.139 Sum_probs=30.9
Q ss_pred cHHHHHHHHhcCCCCCcEEEEcCCCCchHHHHHHHHHccCCCeeE
Q 022972 158 NKQFLSKVEEKLPKDTDLIVACQKGLRSLAACELLYNAGYRNLFW 202 (289)
Q Consensus 158 ~~~f~~~~~~~l~k~~~IVvyC~~G~RS~~aa~~L~~~G~~nV~~ 202 (289)
..++++++.+.+.++..++++..+......+...|.+.||+....
T Consensus 119 ~~~~l~~~~~~Lk~gG~~~~~~~~~~~~~~~~~~l~~~gf~~~~~ 163 (179)
T TIGR00537 119 IDRFLDELPEILKEGGRVQLIQSSLNGEPDTFDKLDERGFRYEIV 163 (179)
T ss_pred HHHHHHhHHHhhCCCCEEEEEEeccCChHHHHHHHHhCCCeEEEE
Confidence 457777777667776666655444344778889999999974333
No 383
>KOG1716 consensus Dual specificity phosphatase [Defense mechanisms]
Probab=20.06 E-value=1.7e+02 Score=27.13 Aligned_cols=29 Identities=31% Similarity=0.508 Sum_probs=21.7
Q ss_pred CCCCcEEEEcCCCC-chH--HHHHHHHHccCC
Q 022972 170 PKDTDLIVACQKGL-RSL--AACELLYNAGYR 198 (289)
Q Consensus 170 ~k~~~IVvyC~~G~-RS~--~aa~~L~~~G~~ 198 (289)
.++..++|+|..|. ||. .+|.++...|.+
T Consensus 153 ~~~~~vlVHC~~GvSRSat~viAYlM~~~~~~ 184 (285)
T KOG1716|consen 153 EKGGKVLVHCQAGVSRSATLVIAYLMKYEGLS 184 (285)
T ss_pred hCCCeEEEEcCCccchhHHHHHHHHHHHcCCC
Confidence 46789999997665 766 567777777764
No 384
>KOG0091 consensus GTPase Rab39, small G protein superfamily [General function prediction only]
Probab=20.04 E-value=57 Score=28.64 Aligned_cols=37 Identities=24% Similarity=0.312 Sum_probs=27.1
Q ss_pred CCccccccccccccchhhhhcccc----hhcCCC--CcchhHHHH
Q 022972 222 PLKFAGIGGLSEFLGYTSQLCYPF----LHISYP--STSFSKMTY 260 (289)
Q Consensus 222 ~~~~~~~~G~t~~~Gkt~~l~~l~----~~~g~~--~~~~~~~~~ 260 (289)
.+++++||..| |||+.+||..- ++..=| ++-|++|++
T Consensus 8 qfrlivigdst--vgkssll~~ft~gkfaelsdptvgvdffarli 50 (213)
T KOG0091|consen 8 QFRLIVIGDST--VGKSSLLRYFTEGKFAELSDPTVGVDFFARLI 50 (213)
T ss_pred EEEEEEEcCCc--ccHHHHHHHHhcCcccccCCCccchHHHHHHH
Confidence 45778898887 89999999861 222334 778899986
Done!