Query 022972
Match_columns 289
No_of_seqs 246 out of 1947
Neff 6.6
Searched_HMMs 29240
Date Mon Mar 25 14:12:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022972.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/022972hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3iwh_A Rhodanese-like domain p 99.9 1.7E-26 5.7E-31 182.5 9.8 101 83-219 1-102 (103)
2 3foj_A Uncharacterized protein 99.9 2.8E-26 9.7E-31 178.9 9.1 99 83-217 1-100 (100)
3 3eme_A Rhodanese-like domain p 99.9 4.7E-26 1.6E-30 178.4 9.8 101 83-219 1-102 (103)
4 1tq1_A AT5G66040, senescence-a 99.9 4E-25 1.4E-29 180.2 10.1 115 80-218 14-128 (129)
5 3gk5_A Uncharacterized rhodane 99.9 2.3E-25 7.8E-30 176.5 7.9 102 82-221 2-103 (108)
6 1gmx_A GLPE protein; transfera 99.9 2.1E-25 7.1E-30 176.1 6.9 102 82-219 3-104 (108)
7 1qxn_A SUD, sulfide dehydrogen 99.9 1.9E-24 6.6E-29 178.3 11.3 109 81-222 20-132 (137)
8 3d1p_A Putative thiosulfate su 99.9 7.7E-24 2.6E-28 174.1 11.9 114 81-218 20-137 (139)
9 2hhg_A Hypothetical protein RP 99.9 2.8E-24 9.5E-29 176.4 8.0 113 81-220 19-134 (139)
10 3hix_A ALR3790 protein; rhodan 99.9 1.9E-24 6.6E-29 170.5 5.6 98 90-221 2-101 (106)
11 3ilm_A ALR3790 protein; rhodan 99.9 5.9E-24 2E-28 176.5 6.7 102 86-221 2-105 (141)
12 1wv9_A Rhodanese homolog TT165 99.9 2.5E-24 8.7E-29 165.9 4.2 93 84-214 2-94 (94)
13 3g5j_A Putative ATP/GTP bindin 99.9 7.8E-25 2.7E-29 177.3 1.1 126 82-214 3-131 (134)
14 3nhv_A BH2092 protein; alpha-b 99.9 4.1E-23 1.4E-27 171.9 11.1 103 84-222 16-123 (144)
15 3flh_A Uncharacterized protein 99.9 2.9E-23 9.9E-28 168.1 6.7 101 83-219 14-119 (124)
16 2k0z_A Uncharacterized protein 99.9 1.3E-23 4.4E-28 166.8 4.4 99 83-219 4-102 (110)
17 1t3k_A Arath CDC25, dual-speci 99.9 6.8E-23 2.3E-27 172.0 8.5 113 79-222 23-144 (152)
18 2fsx_A RV0390, COG0607: rhodan 99.9 2E-22 6.7E-27 167.8 9.0 111 82-218 3-138 (148)
19 1e0c_A Rhodanese, sulfurtransf 99.9 1.4E-21 4.9E-26 176.8 13.5 120 83-220 8-130 (271)
20 3i2v_A Adenylyltransferase and 99.9 2.3E-22 8E-27 161.6 5.8 113 84-216 1-122 (127)
21 1vee_A Proline-rich protein fa 99.9 6.8E-22 2.3E-26 162.1 8.1 110 82-220 3-125 (134)
22 1urh_A 3-mercaptopyruvate sulf 99.8 6.3E-21 2.2E-25 173.5 13.2 120 83-220 3-135 (280)
23 1e0c_A Rhodanese, sulfurtransf 99.8 1.2E-20 4E-25 170.8 10.8 114 84-218 147-270 (271)
24 3hzu_A Thiosulfate sulfurtrans 99.8 1.9E-20 6.4E-25 174.5 11.5 118 82-219 38-159 (318)
25 3aay_A Putative thiosulfate su 99.8 4.2E-20 1.4E-24 167.7 12.4 117 84-220 6-126 (277)
26 2jtq_A Phage shock protein E; 99.8 1.2E-21 4E-26 148.1 1.4 80 99-212 1-80 (85)
27 1rhs_A Sulfur-substituted rhod 99.8 1E-19 3.5E-24 167.3 14.1 120 83-220 7-143 (296)
28 3olh_A MST, 3-mercaptopyruvate 99.8 1.1E-19 3.9E-24 168.0 14.3 121 82-220 20-158 (302)
29 2j6p_A SB(V)-AS(V) reductase; 99.8 2.7E-20 9.2E-25 155.9 9.0 120 82-233 3-134 (152)
30 1c25_A CDC25A; hydrolase, cell 99.8 9.1E-21 3.1E-25 159.4 4.6 108 81-219 20-147 (161)
31 1rhs_A Sulfur-substituted rhod 99.8 8.8E-20 3E-24 167.7 11.5 115 83-219 159-288 (296)
32 1urh_A 3-mercaptopyruvate sulf 99.8 5.7E-20 1.9E-24 167.2 9.6 113 84-219 152-278 (280)
33 4f67_A UPF0176 protein LPG2838 99.8 7E-20 2.4E-24 167.2 9.9 105 81-214 119-223 (265)
34 2vsw_A Dual specificity protei 99.8 2.2E-20 7.5E-25 155.6 5.8 115 84-218 4-132 (153)
35 1uar_A Rhodanese; sulfurtransf 99.8 5.3E-20 1.8E-24 167.7 8.6 117 83-219 7-127 (285)
36 3olh_A MST, 3-mercaptopyruvate 99.8 8.4E-20 2.9E-24 168.9 10.0 113 83-217 174-299 (302)
37 2ouc_A Dual specificity protei 99.8 4.9E-20 1.7E-24 150.2 7.1 114 84-218 1-137 (142)
38 2a2k_A M-phase inducer phospha 99.8 1.4E-19 4.9E-24 154.1 10.0 108 81-219 21-149 (175)
39 1uar_A Rhodanese; sulfurtransf 99.8 1.9E-19 6.4E-24 164.0 11.1 114 84-219 146-282 (285)
40 1qb0_A Protein (M-phase induce 99.8 2.4E-19 8.1E-24 158.0 10.9 108 81-219 41-169 (211)
41 3tp9_A Beta-lactamase and rhod 99.8 1.1E-19 3.6E-24 177.2 8.1 103 81-218 371-473 (474)
42 3aay_A Putative thiosulfate su 99.8 4.8E-19 1.6E-23 160.7 10.6 111 85-219 145-275 (277)
43 3hzu_A Thiosulfate sulfurtrans 99.8 5.3E-19 1.8E-23 164.7 11.0 112 84-219 179-308 (318)
44 3op3_A M-phase inducer phospha 99.8 3.6E-19 1.2E-23 158.0 8.9 107 81-217 54-180 (216)
45 1okg_A Possible 3-mercaptopyru 99.8 1.3E-18 4.6E-23 165.7 12.4 119 83-220 13-144 (373)
46 2eg4_A Probable thiosulfate su 99.8 8.7E-19 3E-23 155.3 9.1 100 83-218 120-229 (230)
47 1hzm_A Dual specificity protei 99.8 4.6E-19 1.6E-23 147.4 6.4 116 82-213 14-142 (154)
48 1yt8_A Thiosulfate sulfurtrans 99.8 8.9E-19 3.1E-23 173.9 9.2 105 82-220 5-111 (539)
49 3f4a_A Uncharacterized protein 99.8 1.6E-19 5.4E-24 154.3 3.0 113 81-218 28-157 (169)
50 1yt8_A Thiosulfate sulfurtrans 99.7 1.4E-18 4.9E-23 172.4 8.6 104 81-219 374-477 (539)
51 2wlr_A Putative thiosulfate su 99.7 6.8E-18 2.3E-22 162.7 12.4 121 84-219 272-406 (423)
52 3ntd_A FAD-dependent pyridine 99.7 1.6E-18 5.5E-23 171.1 7.8 97 80-214 469-565 (565)
53 3tg1_B Dual specificity protei 99.7 5.6E-18 1.9E-22 142.4 9.6 116 81-213 8-142 (158)
54 1whb_A KIAA0055; deubiqutinati 99.7 4E-18 1.4E-22 143.2 8.5 120 81-219 12-146 (157)
55 2wlr_A Putative thiosulfate su 99.7 1.1E-17 3.8E-22 161.2 10.9 115 84-219 124-250 (423)
56 2gwf_A Ubiquitin carboxyl-term 99.7 5.8E-18 2E-22 142.6 7.7 119 81-218 17-150 (157)
57 3ics_A Coenzyme A-disulfide re 99.7 7.2E-18 2.5E-22 167.8 8.3 99 78-213 483-581 (588)
58 2eg4_A Probable thiosulfate su 99.7 4.7E-17 1.6E-21 144.1 7.8 97 97-219 4-103 (230)
59 1okg_A Possible 3-mercaptopyru 99.7 6.7E-17 2.3E-21 153.9 7.7 101 97-218 172-293 (373)
60 3r2u_A Metallo-beta-lactamase 99.6 1.3E-17 4.3E-22 162.9 0.0 87 91-212 379-465 (466)
61 3utn_X Thiosulfate sulfurtrans 99.6 1.8E-15 6.2E-20 141.9 13.2 120 81-219 25-160 (327)
62 3tp9_A Beta-lactamase and rhod 99.6 1.6E-15 5.6E-20 147.6 7.8 104 80-219 269-372 (474)
63 3utn_X Thiosulfate sulfurtrans 99.5 1.9E-14 6.5E-19 134.9 10.5 113 85-213 185-316 (327)
64 3r2u_A Metallo-beta-lactamase 99.2 1.4E-11 4.8E-16 120.0 7.2 79 98-210 295-374 (466)
65 2f46_A Hypothetical protein; s 97.9 1.1E-05 3.8E-10 66.8 5.8 102 85-218 29-145 (156)
66 4erc_A Dual specificity protei 94.3 0.099 3.4E-06 41.6 6.7 88 88-198 25-117 (150)
67 3rgo_A Protein-tyrosine phosph 93.3 0.15 5.1E-06 40.8 6.0 29 170-198 87-118 (157)
68 2img_A Dual specificity protei 92.9 0.2 6.9E-06 39.6 6.3 78 98-198 36-118 (151)
69 2nt2_A Protein phosphatase sli 91.5 0.28 9.7E-06 39.0 5.5 29 170-198 79-110 (145)
70 2hcm_A Dual specificity protei 91.4 0.26 8.7E-06 40.2 5.2 29 170-198 87-118 (164)
71 1v8c_A MOAD related protein; r 91.0 0.043 1.5E-06 46.2 0.1 27 100-130 122-148 (168)
72 1yz4_A DUSP15, dual specificit 90.6 0.46 1.6E-05 38.4 6.1 29 170-198 82-113 (160)
73 2r0b_A Serine/threonine/tyrosi 90.3 0.9 3.1E-05 36.2 7.4 36 160-198 81-119 (154)
74 3ezz_A Dual specificity protei 90.2 0.58 2E-05 37.0 6.2 29 170-198 79-110 (144)
75 3f81_A Dual specificity protei 89.2 0.67 2.3E-05 38.2 6.0 27 172-198 115-144 (183)
76 2e0t_A Dual specificity phosph 89.0 0.48 1.6E-05 37.8 4.8 28 171-198 84-114 (151)
77 1wrm_A Dual specificity phosph 88.8 0.65 2.2E-05 37.8 5.6 29 170-198 81-112 (165)
78 1xri_A AT1G05000; structural g 88.7 0.65 2.2E-05 36.9 5.5 28 171-198 91-120 (151)
79 1fpz_A Cyclin-dependent kinase 88.5 1.1 3.9E-05 37.9 7.1 39 160-198 121-163 (212)
80 1zzw_A Dual specificity protei 87.6 0.97 3.3E-05 35.9 5.8 29 170-198 81-112 (149)
81 2esb_A Dual specificity protei 87.5 1 3.5E-05 37.7 6.1 29 170-198 95-126 (188)
82 3s4e_A Dual specificity protei 87.1 1.1 3.7E-05 35.5 5.8 29 170-198 79-110 (144)
83 1ywf_A Phosphotyrosine protein 87.0 0.45 1.5E-05 43.2 3.9 54 74-127 44-103 (296)
84 2wgp_A Dual specificity protei 85.7 1.3 4.3E-05 37.2 5.8 29 170-198 101-132 (190)
85 3s4o_A Protein tyrosine phosph 84.5 2.6 9E-05 33.5 7.0 28 171-198 108-138 (167)
86 2pq5_A Dual specificity protei 84.0 3.1 0.00011 35.1 7.6 28 171-198 130-160 (205)
87 2g6z_A Dual specificity protei 83.6 1.9 6.5E-05 37.1 6.0 29 170-198 81-112 (211)
88 3rz2_A Protein tyrosine phosph 83.3 3.6 0.00012 34.0 7.6 88 86-197 48-144 (189)
89 2q05_A Late protein H1, dual s 81.3 2.2 7.4E-05 35.9 5.4 29 170-198 123-154 (195)
90 2y96_A Dual specificity phosph 81.0 4.7 0.00016 34.6 7.6 29 170-198 137-168 (219)
91 2oud_A Dual specificity protei 81.0 2.4 8.2E-05 34.9 5.5 29 170-198 85-116 (177)
92 3kb2_A SPBC2 prophage-derived 79.3 0.47 1.6E-05 37.8 0.6 26 225-251 3-28 (173)
93 3emu_A Leucine rich repeat and 77.3 3.1 0.00011 33.7 5.0 29 170-198 85-116 (161)
94 1rxd_A Protein tyrosine phosph 76.6 7.7 0.00026 30.3 7.2 28 170-197 94-123 (159)
95 3trf_A Shikimate kinase, SK; a 75.8 0.7 2.4E-05 37.6 0.7 27 224-251 6-32 (185)
96 1qhx_A CPT, protein (chloramph 75.4 0.76 2.6E-05 37.0 0.8 27 224-251 4-30 (178)
97 3cm3_A Late protein H1, dual s 74.9 4.6 0.00016 33.0 5.5 28 171-198 107-137 (176)
98 1yn9_A BVP, polynucleotide 5'- 73.8 7.6 0.00026 31.3 6.5 28 171-198 112-142 (169)
99 2i6j_A Ssoptp, sulfolobus solf 73.6 7.7 0.00026 30.6 6.4 13 100-112 30-42 (161)
100 3vaa_A Shikimate kinase, SK; s 73.4 0.91 3.1E-05 37.8 0.7 29 222-251 24-52 (199)
101 1ukz_A Uridylate kinase; trans 72.4 1.1 3.9E-05 36.9 1.1 30 221-251 13-42 (203)
102 1zuh_A Shikimate kinase; alpha 72.1 0.94 3.2E-05 36.3 0.5 28 223-251 7-34 (168)
103 2vli_A Antibiotic resistance p 71.3 0.98 3.4E-05 36.5 0.4 27 224-251 6-32 (183)
104 3lw7_A Adenylate kinase relate 71.2 0.97 3.3E-05 35.6 0.4 25 225-251 3-27 (179)
105 2j16_A SDP-1, tyrosine-protein 69.8 9.2 0.00031 31.9 6.3 29 170-198 115-146 (182)
106 1uf9_A TT1252 protein; P-loop, 69.5 1.3 4.5E-05 36.2 0.9 27 223-251 8-34 (203)
107 1e6c_A Shikimate kinase; phosp 68.6 1 3.5E-05 36.0 0.0 27 224-251 3-29 (173)
108 1kag_A SKI, shikimate kinase I 67.8 1.2 4.2E-05 35.6 0.3 27 224-251 5-31 (173)
109 2jgn_A DBX, DDX3, ATP-dependen 67.8 5.9 0.0002 32.6 4.6 45 164-209 38-82 (185)
110 2rhm_A Putative kinase; P-loop 67.3 1.6 5.3E-05 35.5 0.9 28 223-251 5-32 (193)
111 2pt5_A Shikimate kinase, SK; a 67.0 1.4 4.7E-05 35.1 0.5 25 226-251 3-27 (168)
112 1y63_A LMAJ004144AAA protein; 66.1 1.4 5E-05 36.1 0.4 28 223-251 10-38 (184)
113 2iyv_A Shikimate kinase, SK; t 65.8 1.5 5.2E-05 35.5 0.5 26 225-251 4-29 (184)
114 3iij_A Coilin-interacting nucl 65.8 1.3 4.4E-05 35.9 0.0 28 223-251 11-38 (180)
115 2hxp_A Dual specificity protei 65.3 5.2 0.00018 32.0 3.7 29 170-198 83-114 (155)
116 1kht_A Adenylate kinase; phosp 64.8 1 3.5E-05 36.4 -0.7 25 224-249 4-28 (192)
117 3t61_A Gluconokinase; PSI-biol 64.6 1.7 5.7E-05 36.0 0.5 28 223-251 18-45 (202)
118 3gxh_A Putative phosphatase (D 64.4 22 0.00075 28.4 7.4 38 159-198 86-124 (157)
119 2cdn_A Adenylate kinase; phosp 64.2 2.1 7.2E-05 35.3 1.1 27 224-251 21-47 (201)
120 2c95_A Adenylate kinase 1; tra 62.8 1.7 5.7E-05 35.4 0.2 27 224-251 10-36 (196)
121 3ake_A Cytidylate kinase; CMP 62.1 1.9 6.6E-05 35.3 0.5 26 225-251 4-29 (208)
122 4e22_A Cytidylate kinase; P-lo 61.9 2.1 7.2E-05 37.2 0.7 28 223-251 27-54 (252)
123 1tev_A UMP-CMP kinase; ploop, 61.8 1.7 5.7E-05 35.2 -0.0 27 224-251 4-30 (196)
124 1via_A Shikimate kinase; struc 61.7 1.7 5.7E-05 35.1 0.0 26 225-251 6-31 (175)
125 2grj_A Dephospho-COA kinase; T 61.2 1.8 6E-05 36.5 0.1 28 222-251 11-39 (192)
126 1ohe_A CDC14B, CDC14B2 phospha 61.0 20 0.00068 33.0 7.2 29 170-198 267-298 (348)
127 3cm0_A Adenylate kinase; ATP-b 60.9 1.7 6E-05 35.1 -0.0 26 225-251 6-31 (186)
128 1cke_A CK, MSSA, protein (cyti 60.7 1.7 6E-05 36.3 -0.1 26 225-251 7-32 (227)
129 1qf9_A UMP/CMP kinase, protein 60.6 1.6 5.6E-05 35.1 -0.2 27 224-251 7-33 (194)
130 2pez_A Bifunctional 3'-phospho 60.2 2.4 8.2E-05 34.3 0.7 27 224-251 6-35 (179)
131 2bwj_A Adenylate kinase 5; pho 60.1 1.7 5.8E-05 35.4 -0.2 27 224-251 13-39 (199)
132 2z0h_A DTMP kinase, thymidylat 60.1 2.1 7.2E-05 34.8 0.3 26 225-251 2-30 (197)
133 2pbr_A DTMP kinase, thymidylat 59.9 2.3 7.8E-05 34.4 0.5 26 225-251 2-30 (195)
134 1vht_A Dephospho-COA kinase; s 59.3 2.2 7.5E-05 35.7 0.3 26 224-251 5-30 (218)
135 1zd8_A GTP:AMP phosphotransfer 59.2 2 6.7E-05 36.4 0.0 27 224-251 8-34 (227)
136 2ze6_A Isopentenyl transferase 59.1 2.4 8E-05 37.0 0.5 26 225-251 3-28 (253)
137 2jaq_A Deoxyguanosine kinase; 58.9 2.3 7.9E-05 34.6 0.4 26 225-251 2-27 (205)
138 3dl0_A Adenylate kinase; phosp 57.8 2.8 9.7E-05 34.9 0.8 25 226-251 3-27 (216)
139 3fb4_A Adenylate kinase; psych 57.5 2.6 8.9E-05 35.0 0.5 25 226-251 3-27 (216)
140 3v0d_A Voltage-sensor containi 56.7 16 0.00056 33.6 5.8 89 86-197 50-146 (339)
141 1jjv_A Dephospho-COA kinase; P 56.4 3.2 0.00011 34.2 0.9 25 225-251 4-28 (206)
142 1knq_A Gluconate kinase; ALFA/ 54.9 3.2 0.00011 33.3 0.6 28 223-251 8-35 (175)
143 3fdi_A Uncharacterized protein 54.2 3.3 0.00011 34.9 0.6 27 224-251 7-33 (201)
144 1ly1_A Polynucleotide kinase; 54.0 2.4 8.3E-05 33.7 -0.3 27 224-251 3-30 (181)
145 1kgd_A CASK, peripheral plasma 54.0 3.5 0.00012 33.6 0.7 24 223-247 5-28 (180)
146 3ney_A 55 kDa erythrocyte memb 53.7 3.7 0.00013 35.0 0.8 26 221-247 17-42 (197)
147 2f6r_A COA synthase, bifunctio 53.7 3 0.0001 36.9 0.3 28 222-251 74-101 (281)
148 1zp6_A Hypothetical protein AT 53.4 4 0.00014 33.0 0.9 26 221-247 7-32 (191)
149 2if2_A Dephospho-COA kinase; a 53.4 2.9 9.8E-05 34.5 0.1 25 225-251 3-27 (204)
150 1ex7_A Guanylate kinase; subst 53.0 3.2 0.00011 34.9 0.3 23 224-247 2-24 (186)
151 4a29_A Engineered retro-aldol 52.8 45 0.0015 29.6 7.8 89 85-198 136-228 (258)
152 2c46_A MRNA capping enzyme; ph 51.4 22 0.00076 30.8 5.6 39 160-198 127-170 (241)
153 1ak2_A Adenylate kinase isoenz 51.4 3.6 0.00012 35.0 0.3 28 223-251 16-43 (233)
154 2v54_A DTMP kinase, thymidylat 51.2 3 0.0001 34.1 -0.1 27 224-251 5-32 (204)
155 4eun_A Thermoresistant glucoki 51.2 4 0.00014 33.7 0.6 29 222-251 28-56 (200)
156 1fuk_A Eukaryotic initiation f 50.9 15 0.00052 29.1 4.1 46 161-208 20-65 (165)
157 1t5i_A C_terminal domain of A 49.7 19 0.00065 28.9 4.6 37 171-208 30-66 (172)
158 3nme_A Ptpkis1 protein, SEX4 g 49.6 13 0.00043 33.4 3.7 28 171-198 105-135 (294)
159 2rb4_A ATP-dependent RNA helic 49.5 14 0.00049 29.6 3.8 37 171-208 33-69 (175)
160 2hjv_A ATP-dependent RNA helic 49.4 12 0.00041 29.7 3.3 37 171-208 34-70 (163)
161 3tau_A Guanylate kinase, GMP k 49.3 4.5 0.00015 33.8 0.6 25 222-247 7-31 (208)
162 3a4m_A L-seryl-tRNA(SEC) kinas 49.1 5.1 0.00018 34.8 1.0 29 224-253 5-36 (260)
163 1jzt_A Hypothetical 27.5 kDa p 48.8 24 0.00081 30.9 5.3 30 173-203 59-91 (246)
164 2j41_A Guanylate kinase; GMP, 48.6 5.8 0.0002 32.3 1.2 27 223-251 6-32 (207)
165 1aky_A Adenylate kinase; ATP:A 48.4 4.1 0.00014 34.1 0.2 27 224-251 5-31 (220)
166 1e4v_A Adenylate kinase; trans 47.7 4.3 0.00015 33.9 0.3 25 226-251 3-27 (214)
167 1q3t_A Cytidylate kinase; nucl 47.7 4.5 0.00015 34.4 0.4 28 223-251 16-43 (236)
168 2wwf_A Thymidilate kinase, put 47.3 2.6 8.9E-05 34.7 -1.2 26 224-250 11-36 (212)
169 2plr_A DTMP kinase, probable t 46.9 4.8 0.00016 32.9 0.4 27 224-251 5-31 (213)
170 2h92_A Cytidylate kinase; ross 46.9 4.5 0.00015 33.6 0.3 26 225-251 5-30 (219)
171 1zak_A Adenylate kinase; ATP:A 46.8 4.4 0.00015 34.0 0.2 27 224-251 6-32 (222)
172 1uj2_A Uridine-cytidine kinase 46.6 4.7 0.00016 34.7 0.4 27 224-251 23-49 (252)
173 1nks_A Adenylate kinase; therm 46.2 4.3 0.00015 32.5 0.1 24 224-248 2-25 (194)
174 3t15_A Ribulose bisphosphate c 46.1 7.6 0.00026 34.4 1.7 28 223-251 36-63 (293)
175 2bbw_A Adenylate kinase 4, AK4 45.8 5.2 0.00018 34.2 0.5 28 224-252 28-55 (246)
176 3nwj_A ATSK2; P loop, shikimat 45.1 4.5 0.00016 35.5 0.0 28 223-251 48-75 (250)
177 2xb4_A Adenylate kinase; ATP-b 44.6 4.6 0.00016 34.2 -0.0 26 225-251 2-27 (223)
178 3tlx_A Adenylate kinase 2; str 44.5 5.2 0.00018 34.4 0.3 28 223-251 29-56 (243)
179 3nbm_A PTS system, lactose-spe 44.4 13 0.00045 28.4 2.6 34 170-204 4-41 (108)
180 2qor_A Guanylate kinase; phosp 44.2 6.1 0.00021 32.7 0.7 26 222-248 11-36 (204)
181 2i4i_A ATP-dependent RNA helic 44.2 23 0.00078 31.9 4.7 48 160-208 264-311 (417)
182 4i1u_A Dephospho-COA kinase; s 44.1 5.4 0.00018 34.3 0.3 35 223-259 9-45 (210)
183 3a8t_A Adenylate isopentenyltr 43.6 6 0.00021 36.6 0.6 25 224-249 41-65 (339)
184 3be4_A Adenylate kinase; malar 42.6 4.8 0.00016 33.8 -0.3 27 224-251 6-32 (217)
185 3tr0_A Guanylate kinase, GMP k 41.3 6.3 0.00022 32.1 0.3 22 224-246 8-29 (205)
186 2qz4_A Paraplegin; AAA+, SPG7, 40.7 8.2 0.00028 32.7 1.0 27 224-251 40-66 (262)
187 3d3k_A Enhancer of mRNA-decapp 40.4 34 0.0012 30.1 5.0 30 173-203 86-118 (259)
188 3tsm_A IGPS, indole-3-glycerol 40.0 94 0.0032 27.5 7.9 41 157-199 205-245 (272)
189 2r62_A Cell division protease 40.0 10 0.00036 32.4 1.6 25 226-251 47-71 (268)
190 2qt1_A Nicotinamide riboside k 39.9 6.9 0.00024 32.2 0.4 29 221-250 19-48 (207)
191 3zvl_A Bifunctional polynucleo 39.5 10 0.00035 35.6 1.5 28 223-251 258-285 (416)
192 3foz_A TRNA delta(2)-isopenten 39.3 8.9 0.0003 35.2 1.0 26 223-249 10-35 (316)
193 1d2n_A N-ethylmaleimide-sensit 39.1 8.2 0.00028 33.3 0.7 28 223-251 64-91 (272)
194 3uie_A Adenylyl-sulfate kinase 38.5 8.4 0.00029 31.7 0.7 26 222-248 24-49 (200)
195 3eaq_A Heat resistant RNA depe 38.3 17 0.00059 30.3 2.7 37 171-208 30-66 (212)
196 3r20_A Cytidylate kinase; stru 38.1 6.6 0.00023 34.2 -0.1 27 224-251 10-36 (233)
197 3h4m_A Proteasome-activating n 37.7 9.5 0.00033 32.9 0.9 27 224-251 52-78 (285)
198 3exa_A TRNA delta(2)-isopenten 37.6 8.4 0.00029 35.5 0.5 25 224-249 4-28 (322)
199 4fak_A Ribosomal RNA large sub 37.5 30 0.001 28.5 3.9 44 163-206 65-113 (163)
200 3a00_A Guanylate kinase, GMP k 37.2 8.2 0.00028 31.4 0.4 20 225-245 3-22 (186)
201 1p5z_B DCK, deoxycytidine kina 36.7 13 0.00044 32.1 1.6 26 222-248 23-48 (263)
202 2p6n_A ATP-dependent RNA helic 36.7 27 0.00092 28.7 3.6 36 172-208 54-89 (191)
203 1nn5_A Similar to deoxythymidy 36.6 7.6 0.00026 31.8 0.1 23 224-247 10-32 (215)
204 1lv7_A FTSH; alpha/beta domain 36.5 8.8 0.0003 32.8 0.5 25 226-251 48-72 (257)
205 1gtv_A TMK, thymidylate kinase 36.0 5.8 0.0002 32.6 -0.7 22 225-247 2-23 (214)
206 3hdt_A Putative kinase; struct 35.9 6.9 0.00024 33.7 -0.3 27 224-251 15-41 (223)
207 3crm_A TRNA delta(2)-isopenten 35.8 9.2 0.00032 35.1 0.5 26 224-250 6-31 (323)
208 1d5r_A Phosphoinositide phosph 35.6 60 0.002 29.2 6.0 29 159-187 96-127 (324)
209 2yvu_A Probable adenylyl-sulfa 35.5 10 0.00036 30.5 0.8 25 222-247 12-36 (186)
210 2p65_A Hypothetical protein PF 35.3 10 0.00035 29.7 0.7 22 225-247 45-66 (187)
211 2l2q_A PTS system, cellobiose- 35.1 18 0.00062 27.3 2.0 28 171-198 3-34 (109)
212 1jbk_A CLPB protein; beta barr 35.0 11 0.00036 29.5 0.7 23 224-247 44-66 (195)
213 3eph_A TRNA isopentenyltransfe 35.0 8.7 0.0003 36.5 0.2 26 223-249 2-27 (409)
214 3d3q_A TRNA delta(2)-isopenten 34.9 9.6 0.00033 35.2 0.5 25 224-249 8-32 (340)
215 1gvn_B Zeta; postsegregational 34.3 13 0.00045 32.9 1.3 28 223-251 33-62 (287)
216 2jeo_A Uridine-cytidine kinase 34.3 9.5 0.00032 32.6 0.3 28 222-250 24-51 (245)
217 3d3j_A Enhancer of mRNA-decapp 34.1 28 0.00097 31.5 3.5 30 173-203 133-165 (306)
218 2o8n_A APOA-I binding protein; 33.9 28 0.00097 30.9 3.4 30 173-203 80-112 (265)
219 1lvg_A Guanylate kinase, GMP k 33.8 9.8 0.00034 31.5 0.3 22 224-246 5-26 (198)
220 3b9p_A CG5977-PA, isoform A; A 33.7 11 0.00038 32.7 0.7 28 223-251 54-81 (297)
221 3pfi_A Holliday junction ATP-d 33.3 14 0.00046 32.8 1.2 27 224-251 56-82 (338)
222 2vp4_A Deoxynucleoside kinase; 32.8 19 0.00065 30.3 2.0 26 221-247 18-43 (230)
223 3ld9_A DTMP kinase, thymidylat 32.3 39 0.0013 28.9 4.0 24 222-246 20-43 (223)
224 3asz_A Uridine kinase; cytidin 31.9 11 0.00037 31.0 0.3 26 223-249 6-31 (211)
225 2bdt_A BH3686; alpha-beta prot 31.9 12 0.0004 30.2 0.5 22 225-247 4-25 (189)
226 1um8_A ATP-dependent CLP prote 31.6 15 0.00053 33.3 1.3 28 223-251 72-99 (376)
227 3lnc_A Guanylate kinase, GMP k 31.5 9.1 0.00031 32.2 -0.3 23 222-245 26-48 (231)
228 3c8u_A Fructokinase; YP_612366 31.5 13 0.00046 30.7 0.8 24 222-246 21-44 (208)
229 3cf0_A Transitional endoplasmi 31.3 14 0.00047 32.7 0.9 28 223-251 49-76 (301)
230 3hws_A ATP-dependent CLP prote 31.1 16 0.00054 33.1 1.3 29 222-251 50-78 (363)
231 1sxj_A Activator 1 95 kDa subu 30.6 14 0.00049 35.4 0.9 29 222-251 76-104 (516)
232 1ofh_A ATP-dependent HSL prote 30.5 13 0.00043 32.2 0.5 27 224-251 51-77 (310)
233 2v1x_A ATP-dependent DNA helic 30.5 41 0.0014 33.0 4.3 37 171-208 266-302 (591)
234 1hqc_A RUVB; extended AAA-ATPa 30.4 15 0.0005 32.2 0.9 27 224-251 39-65 (324)
235 1in4_A RUVB, holliday junction 30.4 14 0.0005 33.1 0.9 28 223-251 51-78 (334)
236 3n0a_A Tyrosine-protein phosph 30.1 1.1E+02 0.0036 28.4 6.8 85 89-197 50-142 (361)
237 2p5t_B PEZT; postsegregational 30.0 16 0.00055 31.4 1.1 27 222-249 31-57 (253)
238 1e2b_A Enzyme IIB-cellobiose; 29.9 30 0.001 26.1 2.5 30 173-203 4-37 (106)
239 1ltq_A Polynucleotide kinase; 29.9 10 0.00035 33.1 -0.2 27 224-251 3-30 (301)
240 1s96_A Guanylate kinase, GMP k 29.4 14 0.00048 31.5 0.6 25 222-247 15-39 (219)
241 3ec2_A DNA replication protein 28.9 15 0.0005 29.5 0.6 27 224-251 39-69 (180)
242 2b49_A Protein tyrosine phosph 28.9 61 0.0021 28.6 4.8 31 160-190 197-228 (287)
243 2chg_A Replication factor C sm 28.5 14 0.00046 29.7 0.3 21 226-247 41-61 (226)
244 1rz3_A Hypothetical protein rb 28.4 15 0.00052 30.2 0.6 24 222-246 21-44 (201)
245 1xjc_A MOBB protein homolog; s 28.3 14 0.00049 30.4 0.4 28 223-251 4-34 (169)
246 3rss_A Putative uncharacterize 28.2 34 0.0012 33.2 3.1 47 171-218 51-110 (502)
247 1m7g_A Adenylylsulfate kinase; 28.2 17 0.00057 30.1 0.8 24 222-246 24-47 (211)
248 3bos_A Putative DNA replicatio 28.1 15 0.00052 30.1 0.6 23 224-247 53-75 (242)
249 3ipz_A Monothiol glutaredoxin- 28.1 50 0.0017 24.5 3.5 76 171-250 16-98 (109)
250 1njg_A DNA polymerase III subu 27.8 14 0.00048 29.9 0.3 24 225-249 47-70 (250)
251 2ocp_A DGK, deoxyguanosine kin 27.8 13 0.00044 31.5 0.1 24 224-248 3-26 (241)
252 1vkr_A Mannitol-specific PTS s 27.5 37 0.0013 26.4 2.7 26 172-197 13-43 (125)
253 3d8b_A Fidgetin-like protein 1 27.3 17 0.00056 33.1 0.7 28 223-251 117-144 (357)
254 1to0_A Hypothetical UPF0247 pr 27.1 52 0.0018 27.2 3.7 43 164-206 62-109 (167)
255 2yjt_D ATP-dependent RNA helic 32.9 13 0.00046 29.7 0.0 38 171-209 29-66 (170)
256 1oyw_A RECQ helicase, ATP-depe 26.9 50 0.0017 31.7 4.1 37 171-208 235-271 (523)
257 2d7d_A Uvrabc system protein B 26.8 51 0.0017 32.8 4.2 48 159-207 432-479 (661)
258 3eie_A Vacuolar protein sortin 26.7 15 0.00053 32.6 0.4 29 222-251 50-78 (322)
259 2c5s_A THII, probable thiamine 26.7 39 0.0013 31.6 3.2 27 172-198 187-213 (413)
260 1a7j_A Phosphoribulokinase; tr 26.7 10 0.00035 33.7 -0.8 25 224-249 6-30 (290)
261 1z6g_A Guanylate kinase; struc 26.6 17 0.00058 30.5 0.6 24 222-246 22-45 (218)
262 1tvm_A PTS system, galactitol- 26.5 46 0.0016 25.2 3.1 26 173-198 22-52 (113)
263 2eyu_A Twitching motility prot 26.4 18 0.00061 31.7 0.7 24 221-245 23-46 (261)
264 2yxb_A Coenzyme B12-dependent 26.4 47 0.0016 26.8 3.3 32 171-203 17-52 (161)
265 1c4o_A DNA nucleotide excision 26.2 38 0.0013 33.7 3.2 48 159-207 426-473 (664)
266 2w58_A DNAI, primosome compone 26.1 16 0.00054 29.7 0.3 27 224-251 55-84 (202)
267 3kta_A Chromosome segregation 26.1 14 0.0005 29.4 0.1 19 225-244 28-46 (182)
268 3czc_A RMPB; alpha/beta sandwi 25.8 40 0.0014 25.3 2.6 72 173-244 19-105 (110)
269 2wul_A Glutaredoxin related pr 25.6 21 0.00071 27.8 0.9 73 173-249 20-100 (118)
270 1np6_A Molybdopterin-guanine d 25.5 17 0.00059 29.8 0.5 28 223-251 6-36 (174)
271 3i32_A Heat resistant RNA depe 25.4 43 0.0015 29.9 3.1 35 172-207 28-62 (300)
272 3to5_A CHEY homolog; alpha(5)b 25.2 82 0.0028 24.4 4.4 44 169-212 9-52 (134)
273 1wp9_A ATP-dependent RNA helic 24.8 57 0.002 29.3 3.9 35 170-205 359-393 (494)
274 2qmh_A HPR kinase/phosphorylas 24.7 21 0.00071 30.7 0.8 25 224-250 35-59 (205)
275 3gx8_A Monothiol glutaredoxin- 24.6 46 0.0016 25.4 2.8 74 172-249 15-98 (121)
276 4eaq_A DTMP kinase, thymidylat 24.5 22 0.00074 30.3 0.9 26 222-248 25-50 (229)
277 1nij_A Hypothetical protein YJ 24.5 16 0.00054 32.8 0.0 22 223-245 4-25 (318)
278 2kjq_A DNAA-related protein; s 24.4 18 0.00062 28.6 0.4 23 224-247 37-59 (149)
279 1odf_A YGR205W, hypothetical 3 24.4 22 0.00074 31.7 0.9 24 222-246 30-53 (290)
280 2der_A TRNA-specific 2-thiouri 24.2 53 0.0018 30.5 3.6 30 171-201 16-45 (380)
281 2fsf_A Preprotein translocase 24.1 50 0.0017 34.3 3.7 39 170-209 439-477 (853)
282 3syl_A Protein CBBX; photosynt 23.9 22 0.00075 30.8 0.8 27 221-248 65-91 (309)
283 1ixz_A ATP-dependent metallopr 23.7 22 0.00076 30.1 0.8 38 208-251 39-76 (254)
284 1k92_A Argininosuccinate synth 23.7 54 0.0018 31.5 3.6 33 168-201 6-38 (455)
285 1x6v_B Bifunctional 3'-phospho 23.6 24 0.00082 35.3 1.1 27 224-251 53-82 (630)
286 1ko7_A HPR kinase/phosphatase; 23.4 80 0.0027 28.6 4.5 83 165-250 73-169 (314)
287 2x8a_A Nuclear valosin-contain 23.3 33 0.0011 29.9 1.9 25 226-251 47-71 (274)
288 1wy5_A TILS, hypothetical UPF0 23.3 1.1E+02 0.0036 27.3 5.3 39 169-207 21-65 (317)
289 2cwd_A Low molecular weight ph 23.2 39 0.0013 27.3 2.1 38 173-210 5-48 (161)
290 1l8q_A Chromosomal replication 23.0 23 0.00079 31.2 0.8 27 224-251 38-67 (324)
291 3pey_A ATP-dependent RNA helic 23.0 81 0.0028 27.7 4.5 37 171-208 242-278 (395)
292 4h3k_B RNA polymerase II subun 22.6 69 0.0024 27.6 3.6 29 174-203 27-56 (214)
293 1xti_A Probable ATP-dependent 22.6 48 0.0016 29.3 2.9 37 171-208 249-285 (391)
294 4gp7_A Metallophosphoesterase; 22.6 23 0.00079 28.3 0.7 22 222-244 8-29 (171)
295 3mmj_A MYO-inositol hexaphosph 22.3 95 0.0032 28.3 4.8 29 160-189 202-231 (314)
296 2qen_A Walker-type ATPase; unk 22.2 22 0.00076 31.0 0.5 25 224-249 32-56 (350)
297 3jux_A Protein translocase sub 22.0 38 0.0013 35.0 2.2 38 170-208 472-509 (822)
298 3vfd_A Spastin; ATPase, microt 22.0 24 0.00081 32.3 0.7 28 223-251 148-175 (389)
299 3rof_A Low molecular weight pr 21.9 42 0.0014 27.2 2.1 38 173-210 7-49 (158)
300 2fna_A Conserved hypothetical 21.7 17 0.00059 31.8 -0.3 26 224-250 31-56 (357)
301 1iy2_A ATP-dependent metallopr 21.7 39 0.0013 29.1 2.0 38 208-251 63-100 (278)
302 1g41_A Heat shock protein HSLU 21.7 28 0.00094 33.3 1.1 27 224-251 51-77 (444)
303 3zyw_A Glutaredoxin-3; metal b 21.6 59 0.002 24.3 2.8 76 171-250 14-96 (111)
304 3aez_A Pantothenate kinase; tr 21.5 27 0.00092 31.4 0.9 25 221-246 88-112 (312)
305 3gmt_A Adenylate kinase; ssgci 21.3 24 0.00081 30.7 0.5 24 227-251 12-35 (230)
306 2qp9_X Vacuolar protein sortin 21.1 23 0.00078 32.2 0.4 29 222-251 83-111 (355)
307 1ye8_A Protein THEP1, hypothet 21.1 23 0.00078 29.0 0.3 21 226-247 3-23 (178)
308 2qby_A CDC6 homolog 1, cell di 20.9 24 0.00082 31.2 0.5 24 224-248 46-69 (386)
309 2v1u_A Cell division control p 20.8 31 0.0011 30.5 1.2 24 224-248 45-68 (387)
310 1u2p_A Ptpase, low molecular w 20.8 41 0.0014 27.1 1.8 38 173-210 5-48 (163)
311 1s2m_A Putative ATP-dependent 20.7 54 0.0018 29.2 2.8 45 162-208 249-293 (400)
312 1pui_A ENGB, probable GTP-bind 20.6 35 0.0012 27.4 1.4 22 223-245 26-47 (210)
313 1tf5_A Preprotein translocase 20.5 36 0.0012 35.3 1.7 39 170-209 430-468 (844)
314 1xwi_A SKD1 protein; VPS4B, AA 20.4 27 0.00092 31.3 0.7 28 222-250 44-72 (322)
315 3co5_A Putative two-component 20.3 30 0.001 26.8 0.8 23 226-249 30-52 (143)
316 4fcw_A Chaperone protein CLPB; 20.2 30 0.001 29.9 0.9 25 222-247 46-70 (311)
317 3jvv_A Twitching mobility prot 20.2 28 0.00095 32.0 0.7 22 222-244 122-143 (356)
318 1nkt_A Preprotein translocase 20.1 54 0.0019 34.3 2.9 39 170-209 458-496 (922)
319 3rd5_A Mypaa.01249.C; ssgcid, 20.1 8.1 0.00028 33.8 -2.9 33 224-259 17-49 (291)
320 1hv8_A Putative ATP-dependent 20.0 71 0.0024 27.7 3.4 38 170-208 236-273 (367)
321 2zts_A Putative uncharacterize 20.0 16 0.00056 30.3 -0.8 47 193-245 2-51 (251)
No 1
>3iwh_A Rhodanese-like domain protein; alpha-beta-alpha sandwich, structural genomics, C structural genomics of infectious diseases, csgid; 2.00A {Staphylococcus aureus subsp} PDB: 3mzz_A
Probab=99.93 E-value=1.7e-26 Score=182.49 Aligned_cols=101 Identities=26% Similarity=0.376 Sum_probs=90.1
Q ss_pred cceeCHHHHHHhhcC-CCcEEEEeCChhhhhhccCCCcEeeCCCCCcccccCCCCCccccccccCCccCCCCCCcccHHH
Q 022972 83 VKVLTPREAGYAVQL-SSKTLLDVRPSTERKKAWIKGSIWIPIFDIDDTFDAGSLPQKVTNFVMGGWWSGVPTLSYNKQF 161 (289)
Q Consensus 83 ~~~Is~~el~~~l~~-~~~vlIDVRs~~Ey~~ghIPGAinIP~~~~~~~~~vgtlyk~~~~~~~~a~~~g~~~~~~~~~f 161 (289)
++.||++|+.+.+.+ ++.+|||||++.||+.||||||+|||+.++.++.
T Consensus 1 ~k~Is~~el~~~l~~~~~~~liDvR~~~e~~~ghIpgA~~ip~~~l~~~~------------------------------ 50 (103)
T 3iwh_A 1 MKSITTDELKNKLLESKPVQIVDVRTDEETAMGYIPNAKLIPMDTIPDNL------------------------------ 50 (103)
T ss_dssp CCEECHHHHHHGGGSSSCCEEEECSCHHHHTTCBCTTCEECCGGGGGGCG------------------------------
T ss_pred CCCcCHHHHHHHHhCCCCeEEEECCChhHHhcCccCCcccCcccchhhhh------------------------------
Confidence 468999999987754 4789999999999999999999999998876554
Q ss_pred HHHHHhcCCCCCcEEEEcCCCCchHHHHHHHHHccCCCeeEccccHHHHHhCCCCccC
Q 022972 162 LSKVEEKLPKDTDLIVACQKGLRSLAACELLYNAGYRNLFWVQGGLEAAEEEDLVREG 219 (289)
Q Consensus 162 ~~~~~~~l~k~~~IVvyC~~G~RS~~aa~~L~~~G~~nV~~L~GG~~aw~~~gl~~~~ 219 (289)
..++++++||+||++|.||..++..|+..||+ ++.|.||+.+|+++|+|+++
T Consensus 51 -----~~l~~~~~ivv~C~~G~rS~~aa~~L~~~G~~-~~~l~GG~~~W~~~g~pves 102 (103)
T 3iwh_A 51 -----NSFNKNEIYYIVCAGGVRSAKVVEYLEANGID-AVNVEGGMHAWGDEGLEIKS 102 (103)
T ss_dssp -----GGCCTTSEEEEECSSSSHHHHHHHHHHTTTCE-EEEETTHHHHHCSSSCBCCC
T ss_pred -----hhhcCCCeEEEECCCCHHHHHHHHHHHHcCCC-EEEecChHHHHHHCCCccee
Confidence 36789999999999999999999999999997 45799999999999999874
No 2
>3foj_A Uncharacterized protein; protein SSP1007, structural genomics, PSI-2, protein structure initiative; 1.60A {Staphylococcus saprophyticus subsp}
Probab=99.93 E-value=2.8e-26 Score=178.88 Aligned_cols=99 Identities=24% Similarity=0.376 Sum_probs=89.5
Q ss_pred cceeCHHHHHHhhc-CCCcEEEEeCChhhhhhccCCCcEeeCCCCCcccccCCCCCccccccccCCccCCCCCCcccHHH
Q 022972 83 VKVLTPREAGYAVQ-LSSKTLLDVRPSTERKKAWIKGSIWIPIFDIDDTFDAGSLPQKVTNFVMGGWWSGVPTLSYNKQF 161 (289)
Q Consensus 83 ~~~Is~~el~~~l~-~~~~vlIDVRs~~Ey~~ghIPGAinIP~~~~~~~~~vgtlyk~~~~~~~~a~~~g~~~~~~~~~f 161 (289)
++.|+++|+.++++ .++.+|||||++.||+.||||||+|+|+.++.++.
T Consensus 1 ~~~is~~el~~~l~~~~~~~liDvR~~~e~~~ghIpgA~~ip~~~l~~~~------------------------------ 50 (100)
T 3foj_A 1 MESITVTELKEKILDANPVNIVDVRTDQETAMGIIPGAETIPMNSIPDNL------------------------------ 50 (100)
T ss_dssp CCEECHHHHHHGGGSSSCCEEEECSCHHHHTTCBCTTCEECCGGGGGGCG------------------------------
T ss_pred CCccCHHHHHHHHhcCCCcEEEECCCHHHHhcCcCCCCEECCHHHHHHHH------------------------------
Confidence 35799999999884 56899999999999999999999999998776543
Q ss_pred HHHHHhcCCCCCcEEEEcCCCCchHHHHHHHHHccCCCeeEccccHHHHHhCCCCc
Q 022972 162 LSKVEEKLPKDTDLIVACQKGLRSLAACELLYNAGYRNLFWVQGGLEAAEEEDLVR 217 (289)
Q Consensus 162 ~~~~~~~l~k~~~IVvyC~~G~RS~~aa~~L~~~G~~nV~~L~GG~~aw~~~gl~~ 217 (289)
..++++++||+||++|.||..+++.|+.+|| ||+.|+||+.+|+++|+|+
T Consensus 51 -----~~l~~~~~ivvyC~~g~rs~~a~~~L~~~G~-~v~~l~GG~~~W~~~g~pv 100 (100)
T 3foj_A 51 -----NYFNDNETYYIICKAGGRSAQVVQYLEQNGV-NAVNVEGGMDEFGDEGLEH 100 (100)
T ss_dssp -----GGSCTTSEEEEECSSSHHHHHHHHHHHTTTC-EEEEETTHHHHHCSSSCBC
T ss_pred -----HhCCCCCcEEEEcCCCchHHHHHHHHHHCCC-CEEEecccHHHHHHcCCCC
Confidence 3578899999999999999999999999999 8999999999999999885
No 3
>3eme_A Rhodanese-like domain protein; alpha-beta-alpha sandwich, structural genomics; 2.00A {Staphylococcus aureus subsp} PDB: 3iwh_A 3mzz_A
Probab=99.93 E-value=4.7e-26 Score=178.37 Aligned_cols=101 Identities=26% Similarity=0.397 Sum_probs=90.8
Q ss_pred cceeCHHHHHHhh-cCCCcEEEEeCChhhhhhccCCCcEeeCCCCCcccccCCCCCccccccccCCccCCCCCCcccHHH
Q 022972 83 VKVLTPREAGYAV-QLSSKTLLDVRPSTERKKAWIKGSIWIPIFDIDDTFDAGSLPQKVTNFVMGGWWSGVPTLSYNKQF 161 (289)
Q Consensus 83 ~~~Is~~el~~~l-~~~~~vlIDVRs~~Ey~~ghIPGAinIP~~~~~~~~~vgtlyk~~~~~~~~a~~~g~~~~~~~~~f 161 (289)
++.|+++|+.+++ +.++.+|||||++.||+.||||||+|||+.++.+..
T Consensus 1 ~~~is~~el~~~l~~~~~~~liDvR~~~e~~~ghIpgA~~ip~~~l~~~~------------------------------ 50 (103)
T 3eme_A 1 MKSITTDELKNKLLESKPVQIVDVRTDEETAMGYIPNAKLIPMDTIPDNL------------------------------ 50 (103)
T ss_dssp CCEECHHHHHHGGGSSSCCEEEECSCHHHHTTCBCTTCEECCGGGGGGCG------------------------------
T ss_pred CCccCHHHHHHHHhcCCCCEEEECCCHHHHhcCcCCCCEEcCHHHHHHHH------------------------------
Confidence 3579999999988 456899999999999999999999999998766543
Q ss_pred HHHHHhcCCCCCcEEEEcCCCCchHHHHHHHHHccCCCeeEccccHHHHHhCCCCccC
Q 022972 162 LSKVEEKLPKDTDLIVACQKGLRSLAACELLYNAGYRNLFWVQGGLEAAEEEDLVREG 219 (289)
Q Consensus 162 ~~~~~~~l~k~~~IVvyC~~G~RS~~aa~~L~~~G~~nV~~L~GG~~aw~~~gl~~~~ 219 (289)
..++++++||+||++|.||..+++.|+.+|| +|+.|+||+.+|+++|+|+++
T Consensus 51 -----~~l~~~~~iv~yC~~g~rs~~a~~~L~~~G~-~v~~l~GG~~~W~~~g~p~~~ 102 (103)
T 3eme_A 51 -----NSFNKNEIYYIVCAGGVRSAKVVEYLEANGI-DAVNVEGGMHAWGDEGLEIKS 102 (103)
T ss_dssp -----GGCCTTSEEEEECSSSSHHHHHHHHHHTTTC-EEEEETTHHHHHCSSSCBCCC
T ss_pred -----HhCCCCCeEEEECCCChHHHHHHHHHHHCCC-CeEEeCCCHHHHHHCCCcCCC
Confidence 3578899999999999999999999999999 899999999999999999863
No 4
>1tq1_A AT5G66040, senescence-associated family protein; CESG, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana} SCOP: c.46.1.3
Probab=99.92 E-value=4e-25 Score=180.24 Aligned_cols=115 Identities=25% Similarity=0.362 Sum_probs=98.9
Q ss_pred CCCcceeCHHHHHHhhcCCCcEEEEeCChhhhhhccCCCcEeeCCCCCcccccCCCCCccccccccCCccCCCCCCcccH
Q 022972 80 DGKVKVLTPREAGYAVQLSSKTLLDVRPSTERKKAWIKGSIWIPIFDIDDTFDAGSLPQKVTNFVMGGWWSGVPTLSYNK 159 (289)
Q Consensus 80 ~~~~~~Is~~el~~~l~~~~~vlIDVRs~~Ey~~ghIPGAinIP~~~~~~~~~vgtlyk~~~~~~~~a~~~g~~~~~~~~ 159 (289)
....+.|+++++.++++ ++.+|||||++.||+.||||||+|||+..+... ++.+++
T Consensus 14 ~~~~~~is~~e~~~~l~-~~~~lIDvR~~~e~~~ghIpgAinip~~~~~~~-----------------------~~~~~~ 69 (129)
T 1tq1_A 14 SRVPSSVSVTVAHDLLL-AGHRYLDVRTPEEFSQGHACGAINVPYMNRGAS-----------------------GMSKNT 69 (129)
T ss_dssp SCCCEEEEHHHHHHHHH-HTCCEEEESCHHHHHHCCBTTBEECCSCCCSTT-----------------------TCCCTT
T ss_pred cCCCcccCHHHHHHHhc-CCCEEEECCCHHHHhcCCCCCcEECcHhhcccc-----------------------cccCCH
Confidence 36678999999999886 578999999999999999999999998765321 223345
Q ss_pred HHHHHHHhcCCCCCcEEEEcCCCCchHHHHHHHHHccCCCeeEccccHHHHHhCCCCcc
Q 022972 160 QFLSKVEEKLPKDTDLIVACQKGLRSLAACELLYNAGYRNLFWVQGGLEAAEEEDLVRE 218 (289)
Q Consensus 160 ~f~~~~~~~l~k~~~IVvyC~~G~RS~~aa~~L~~~G~~nV~~L~GG~~aw~~~gl~~~ 218 (289)
+++++....++++++|||||++|.||..+++.|+.+||+||+.|+||+.+|+++|+|++
T Consensus 70 ~~~~~~~~~l~~~~~ivvyC~~G~rs~~aa~~L~~~G~~~v~~l~GG~~~W~~~g~p~~ 128 (129)
T 1tq1_A 70 DFLEQVSSHFGQSDNIIVGCQSGGRSIKATTDLLHAGFTGVKDIVGGYSAWAKNGLPTK 128 (129)
T ss_dssp THHHHHTTTCCTTSSEEEEESSCSHHHHHHHHHHHHHCCSEEEEECCHHHHHHHTCCCC
T ss_pred HHHHHHHhhCCCCCeEEEECCCCcHHHHHHHHHHHcCCCCeEEeCCcHHHHHhCCCCCC
Confidence 67777666788999999999999999999999999999999999999999999999875
No 5
>3gk5_A Uncharacterized rhodanese-related protein TVG0868615; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.40A {Thermoplasma volcanium GSS1}
Probab=99.92 E-value=2.3e-25 Score=176.51 Aligned_cols=102 Identities=29% Similarity=0.359 Sum_probs=89.9
Q ss_pred CcceeCHHHHHHhhcCCCcEEEEeCChhhhhhccCCCcEeeCCCCCcccccCCCCCccccccccCCccCCCCCCcccHHH
Q 022972 82 KVKVLTPREAGYAVQLSSKTLLDVRPSTERKKAWIKGSIWIPIFDIDDTFDAGSLPQKVTNFVMGGWWSGVPTLSYNKQF 161 (289)
Q Consensus 82 ~~~~Is~~el~~~l~~~~~vlIDVRs~~Ey~~ghIPGAinIP~~~~~~~~~vgtlyk~~~~~~~~a~~~g~~~~~~~~~f 161 (289)
.++.|+++|+.++++. .+|||||++.||+.||||||+|||+.++.++.
T Consensus 2 ~~~~is~~el~~~l~~--~~iiDvR~~~e~~~ghIpgA~~ip~~~l~~~~------------------------------ 49 (108)
T 3gk5_A 2 YYRSINAADLYENIKA--YTVLDVREPFELIFGSIANSINIPISELREKW------------------------------ 49 (108)
T ss_dssp -CCEECHHHHHHTTTT--CEEEECSCHHHHTTCBCTTCEECCHHHHHHHG------------------------------
T ss_pred cccEeCHHHHHHHHcC--CEEEECCCHHHHhcCcCCCCEEcCHHHHHHHH------------------------------
Confidence 4678999999998765 99999999999999999999999986554322
Q ss_pred HHHHHhcCCCCCcEEEEcCCCCchHHHHHHHHHccCCCeeEccccHHHHHhCCCCccCCC
Q 022972 162 LSKVEEKLPKDTDLIVACQKGLRSLAACELLYNAGYRNLFWVQGGLEAAEEEDLVREGPQ 221 (289)
Q Consensus 162 ~~~~~~~l~k~~~IVvyC~~G~RS~~aa~~L~~~G~~nV~~L~GG~~aw~~~gl~~~~~~ 221 (289)
..++++++||+||++|.||..+++.|+.+|| ||+.|+||+.+|++++.|++...
T Consensus 50 -----~~l~~~~~ivvyC~~G~rs~~aa~~L~~~G~-~v~~l~GG~~~W~~~~~~~~~~~ 103 (108)
T 3gk5_A 50 -----KILERDKKYAVICAHGNRSAAAVEFLSQLGL-NIVDVEGGIQSWIEEGYPVVLEH 103 (108)
T ss_dssp -----GGSCTTSCEEEECSSSHHHHHHHHHHHTTTC-CEEEETTHHHHHHHTTCCCBCC-
T ss_pred -----HhCCCCCeEEEEcCCCcHHHHHHHHHHHcCC-CEEEEcCcHHHHHHcCCCCCCCC
Confidence 3578899999999999999999999999999 89999999999999999988543
No 6
>1gmx_A GLPE protein; transferase, rhodanese, sulfurtransferase, glycerol metabolism; 1.1A {Escherichia coli} SCOP: c.46.1.3 PDB: 1gn0_A
Probab=99.91 E-value=2.1e-25 Score=176.12 Aligned_cols=102 Identities=20% Similarity=0.282 Sum_probs=90.3
Q ss_pred CcceeCHHHHHHhhcCCCcEEEEeCChhhhhhccCCCcEeeCCCCCcccccCCCCCccccccccCCccCCCCCCcccHHH
Q 022972 82 KVKVLTPREAGYAVQLSSKTLLDVRPSTERKKAWIKGSIWIPIFDIDDTFDAGSLPQKVTNFVMGGWWSGVPTLSYNKQF 161 (289)
Q Consensus 82 ~~~~Is~~el~~~l~~~~~vlIDVRs~~Ey~~ghIPGAinIP~~~~~~~~~vgtlyk~~~~~~~~a~~~g~~~~~~~~~f 161 (289)
.++.|+++++.++++.++.+|||||++.||+.||||||+|||+.++.+
T Consensus 3 ~~~~i~~~~l~~~~~~~~~~liDvR~~~e~~~ghIpgA~~ip~~~l~~-------------------------------- 50 (108)
T 1gmx_A 3 QFECINVADAHQKLQEKEAVLVDIRDPQSFAMGHAVQAFHLTNDTLGA-------------------------------- 50 (108)
T ss_dssp SCEEECHHHHHHHHHTTCCEEEECSCHHHHHHCEETTCEECCHHHHHH--------------------------------
T ss_pred cccccCHHHHHHHHhCCCCEEEEcCCHHHHHhCCCccCEeCCHHHHHH--------------------------------
Confidence 467899999999988778999999999999999999999999754322
Q ss_pred HHHHHhcCCCCCcEEEEcCCCCchHHHHHHHHHccCCCeeEccccHHHHHhCCCCccC
Q 022972 162 LSKVEEKLPKDTDLIVACQKGLRSLAACELLYNAGYRNLFWVQGGLEAAEEEDLVREG 219 (289)
Q Consensus 162 ~~~~~~~l~k~~~IVvyC~~G~RS~~aa~~L~~~G~~nV~~L~GG~~aw~~~gl~~~~ 219 (289)
.+ ..++++++||+||++|.||..+++.|+..||+||+.|+||+.+|.+. +|++.
T Consensus 51 --~~-~~l~~~~~ivvyc~~g~rs~~a~~~L~~~G~~~v~~l~GG~~~W~~~-~p~~~ 104 (108)
T 1gmx_A 51 --FM-RDNDFDTPVMVMCYHGNSSKGAAQYLLQQGYDVVYSIDGGFEAWQRQ-FPAEV 104 (108)
T ss_dssp --HH-HHSCTTSCEEEECSSSSHHHHHHHHHHHHTCSSEEEETTHHHHHHHH-CGGGE
T ss_pred --HH-HhcCCCCCEEEEcCCCchHHHHHHHHHHcCCceEEEecCCHHHHHHh-CCccc
Confidence 12 24788999999999999999999999999999999999999999998 88863
No 7
>1qxn_A SUD, sulfide dehydrogenase; polysulfide-sulfur transferase, homodimer; NMR {Wolinella succinogenes} SCOP: c.46.1.3
Probab=99.91 E-value=1.9e-24 Score=178.33 Aligned_cols=109 Identities=22% Similarity=0.316 Sum_probs=95.5
Q ss_pred CCcceeCHHHHHHhhc-CCCcEEEEeCChhhhhh-cc--CCCcEeeCCCCCcccccCCCCCccccccccCCccCCCCCCc
Q 022972 81 GKVKVLTPREAGYAVQ-LSSKTLLDVRPSTERKK-AW--IKGSIWIPIFDIDDTFDAGSLPQKVTNFVMGGWWSGVPTLS 156 (289)
Q Consensus 81 ~~~~~Is~~el~~~l~-~~~~vlIDVRs~~Ey~~-gh--IPGAinIP~~~~~~~~~vgtlyk~~~~~~~~a~~~g~~~~~ 156 (289)
...+.|+++++.++++ .++.+|||||++.||+. || ||||+|||+.++.+.
T Consensus 20 ~~~~~is~~el~~~l~~~~~~~liDVR~~~E~~~~gh~~IpgAinip~~~l~~~-------------------------- 73 (137)
T 1qxn_A 20 ADMVMLSPKDAYKLLQENPDITLIDVRDPDELKAMGKPDVKNYKHMSRGKLEPL-------------------------- 73 (137)
T ss_dssp HSSEEECHHHHHHHHHHCTTSEEEECCCHHHHHHTCEECCSSEEECCTTTSHHH--------------------------
T ss_pred ccCcccCHHHHHHHHhcCCCeEEEECCCHHHHHhcCCcCCCCCEEcchHHhhhH--------------------------
Confidence 4577999999999987 67899999999999999 99 999999998875421
Q ss_pred ccHHHHHHHHhcCCCCCcEEEEcCCCCchHHHHHHHHHccCCCeeEccccHHHHHhCCCCccCCCC
Q 022972 157 YNKQFLSKVEEKLPKDTDLIVACQKGLRSLAACELLYNAGYRNLFWVQGGLEAAEEEDLVREGPQP 222 (289)
Q Consensus 157 ~~~~f~~~~~~~l~k~~~IVvyC~~G~RS~~aa~~L~~~G~~nV~~L~GG~~aw~~~gl~~~~~~~ 222 (289)
.. ...++++++|||||++|.||..+++.|+..||+||+.|+||+.+|.++|+|++...+
T Consensus 74 ------~~-~~~l~~~~~ivvyC~~G~rS~~aa~~L~~~G~~~v~~l~GG~~~W~~~g~p~~~~~~ 132 (137)
T 1qxn_A 74 ------LA-KSGLDPEKPVVVFCKTAARAALAGKTLREYGFKTIYNSEGGMDKWLEEGLPSLDRSH 132 (137)
T ss_dssp ------HH-HHCCCTTSCEEEECCSSSCHHHHHHHHHHHTCSCEEEESSCHHHHHHTTCCEECCCC
T ss_pred ------Hh-hccCCCCCeEEEEcCCCcHHHHHHHHHHHcCCcceEEEcCcHHHHHHCCCCcccccc
Confidence 01 135788999999999999999999999999999999999999999999999886443
No 8
>3d1p_A Putative thiosulfate sulfurtransferase YOR285W; atomic structure, atomic resolution structure, PSI, MCSG; HET: MSE; 0.98A {Saccharomyces cerevisiae}
Probab=99.90 E-value=7.7e-24 Score=174.09 Aligned_cols=114 Identities=21% Similarity=0.255 Sum_probs=95.3
Q ss_pred CCcceeCHHHHHHhhc--CCCcEEEEeCChhhhhhccCCCcEeeCCCCCcccccCCCCCccccccccCCccCCCCCCccc
Q 022972 81 GKVKVLTPREAGYAVQ--LSSKTLLDVRPSTERKKAWIKGSIWIPIFDIDDTFDAGSLPQKVTNFVMGGWWSGVPTLSYN 158 (289)
Q Consensus 81 ~~~~~Is~~el~~~l~--~~~~vlIDVRs~~Ey~~ghIPGAinIP~~~~~~~~~vgtlyk~~~~~~~~a~~~g~~~~~~~ 158 (289)
...+.|+++|+.++++ .++.+|||||++.||+.||||||+|||+.++.++. ...
T Consensus 20 ~~~~~is~~el~~~l~~~~~~~~liDvR~~~e~~~ghIpgAinip~~~l~~~~------------------------~~~ 75 (139)
T 3d1p_A 20 SNIQSYSFEDMKRIVGKHDPNVVLVDVREPSEYSIVHIPASINVPYRSHPDAF------------------------ALD 75 (139)
T ss_dssp CCCEECCHHHHHHHHHHTCTTEEEEECSCHHHHHHCCCTTCEECCTTTCTTGG------------------------GSC
T ss_pred CCcceecHHHHHHHHhCCCCCeEEEECcCHHHHhCCCCCCcEEcCHHHhhhhc------------------------cCC
Confidence 5678999999999886 35789999999999999999999999998765322 122
Q ss_pred H-HHHHHHHh-cCCCCCcEEEEcCCCCchHHHHHHHHHccCCCeeEccccHHHHHhCCCCcc
Q 022972 159 K-QFLSKVEE-KLPKDTDLIVACQKGLRSLAACELLYNAGYRNLFWVQGGLEAAEEEDLVRE 218 (289)
Q Consensus 159 ~-~f~~~~~~-~l~k~~~IVvyC~~G~RS~~aa~~L~~~G~~nV~~L~GG~~aw~~~gl~~~ 218 (289)
+ +|.+.+.. .++++++||+||++|.||..++..|+.+||+||+.|+||+.+|.+.|+|+.
T Consensus 76 ~~~~~~~~~~~~~~~~~~ivvyC~~G~rs~~aa~~L~~~G~~~v~~l~GG~~~W~~~g~p~~ 137 (139)
T 3d1p_A 76 PLEFEKQIGIPKPDSAKELIFYCASGKRGGEAQKVASSHGYSNTSLYPGSMNDWVSHGGDKL 137 (139)
T ss_dssp HHHHHHHHSSCCCCTTSEEEEECSSSHHHHHHHHHHHTTTCCSEEECTTHHHHHHHTTGGGC
T ss_pred HHHHHHHHhccCCCCCCeEEEECCCCchHHHHHHHHHHcCCCCeEEeCCcHHHHHHcCCCCC
Confidence 2 33333221 367889999999999999999999999999999999999999999999875
No 9
>2hhg_A Hypothetical protein RPA3614; MCSG, structural genomics, rohopseudom palustris, PSI-2, protein structure initiative; 1.20A {Rhodopseudomonas palustris}
Probab=99.90 E-value=2.8e-24 Score=176.38 Aligned_cols=113 Identities=21% Similarity=0.228 Sum_probs=93.6
Q ss_pred CCcceeCHHHHHHhhc--CCCcEEEEeCChhhhhh-ccCCCcEeeCCCCCcccccCCCCCccccccccCCccCCCCCCcc
Q 022972 81 GKVKVLTPREAGYAVQ--LSSKTLLDVRPSTERKK-AWIKGSIWIPIFDIDDTFDAGSLPQKVTNFVMGGWWSGVPTLSY 157 (289)
Q Consensus 81 ~~~~~Is~~el~~~l~--~~~~vlIDVRs~~Ey~~-ghIPGAinIP~~~~~~~~~vgtlyk~~~~~~~~a~~~g~~~~~~ 157 (289)
..+..|+++|+.++++ .++.+|||||++.||+. ||||||+|||+.++..+.+...-+
T Consensus 19 ~~~~~is~~~l~~~l~~~~~~~~liDvR~~~e~~~~ghIpgA~~ip~~~l~~~~~~~~~~-------------------- 78 (139)
T 2hhg_A 19 SSIETLTTADAIALHKSGASDVVIVDIRDPREIERDGKIPGSFSCTRGMLEFWIDPQSPY-------------------- 78 (139)
T ss_dssp TTSEEECHHHHHHHHHTTCTTEEEEECSCHHHHHHHCCCTTCEECCGGGHHHHHCTTSTT--------------------
T ss_pred HhcCccCHHHHHHHHhccCCCeEEEECCCHHHHHhCCCCCCeEECChHHHHHhcCccchh--------------------
Confidence 4678999999999987 56899999999999999 999999999998765432100000
Q ss_pred cHHHHHHHHhcCCCCCcEEEEcCCCCchHHHHHHHHHccCCCeeEccccHHHHHhCCCCccCC
Q 022972 158 NKQFLSKVEEKLPKDTDLIVACQKGLRSLAACELLYNAGYRNLFWVQGGLEAAEEEDLVREGP 220 (289)
Q Consensus 158 ~~~f~~~~~~~l~k~~~IVvyC~~G~RS~~aa~~L~~~G~~nV~~L~GG~~aw~~~gl~~~~~ 220 (289)
+ ...++++++|||||++|.||..+++.|+.+||+||+.|+||+.+|+++|+|++..
T Consensus 79 ---~----~~~~~~~~~ivvyC~~G~rs~~a~~~L~~~G~~~v~~l~GG~~~W~~~g~p~~~~ 134 (139)
T 2hhg_A 79 ---A----KPIFQEDKKFVFYCAGGLRSALAAKTAQDMGLKPVAHIEGGFGAWRDAGGPIEAW 134 (139)
T ss_dssp ---C----CGGGGSSSEEEEECSSSHHHHHHHHHHHHHTCCSEEEETTHHHHHHHTTCCCC--
T ss_pred ---h----hccCCCCCeEEEECCCChHHHHHHHHHHHcCCCCeEEecCCHHHHHHCCCCeecC
Confidence 0 0245788999999999999999999999999999999999999999999998753
No 10
>3hix_A ALR3790 protein; rhodanese, rhodanese_3, Q8YQN0, Q8YQN0_anAsp, NSR437I, NESG, structural genomics, PSI-2, protein structure initiative; 1.92A {Anabaena SP} PDB: 3k9r_A
Probab=99.90 E-value=1.9e-24 Score=170.48 Aligned_cols=98 Identities=26% Similarity=0.301 Sum_probs=79.1
Q ss_pred HHHHhhc--CCCcEEEEeCChhhhhhccCCCcEeeCCCCCcccccCCCCCccccccccCCccCCCCCCcccHHHHHHHHh
Q 022972 90 EAGYAVQ--LSSKTLLDVRPSTERKKAWIKGSIWIPIFDIDDTFDAGSLPQKVTNFVMGGWWSGVPTLSYNKQFLSKVEE 167 (289)
Q Consensus 90 el~~~l~--~~~~vlIDVRs~~Ey~~ghIPGAinIP~~~~~~~~~vgtlyk~~~~~~~~a~~~g~~~~~~~~~f~~~~~~ 167 (289)
|+.++++ .++.+|||||++.||..||||||+|||+.++.+ ....
T Consensus 2 el~~~l~~~~~~~~liDvR~~~e~~~ghIpgAi~ip~~~l~~----------------------------------~~~~ 47 (106)
T 3hix_A 2 VLKSRLEWGEPAFTILDVRDRSTYNDGHIMGAMAMPIEDLVD----------------------------------RASS 47 (106)
T ss_dssp -----------CCEEEECSCHHHHHTCEETTCEECCGGGHHH----------------------------------HHHH
T ss_pred hHHHHHHcCCCCeEEEECCCHHHHhcCcCCCCEeCCHHHHHH----------------------------------HHHh
Confidence 4555555 346899999999999999999999999865432 2224
Q ss_pred cCCCCCcEEEEcCCCCchHHHHHHHHHccCCCeeEccccHHHHHhCCCCccCCC
Q 022972 168 KLPKDTDLIVACQKGLRSLAACELLYNAGYRNLFWVQGGLEAAEEEDLVREGPQ 221 (289)
Q Consensus 168 ~l~k~~~IVvyC~~G~RS~~aa~~L~~~G~~nV~~L~GG~~aw~~~gl~~~~~~ 221 (289)
.++++++|||||++|.||..+++.|+.+||+||+.|+||+.+|+++|+|+++..
T Consensus 48 ~l~~~~~ivvyc~~g~rs~~a~~~L~~~G~~~v~~l~GG~~~W~~~g~~~~~~~ 101 (106)
T 3hix_A 48 SLEKSRDIYVYGAGDEQTSQAVNLLRSAGFEHVSELKGGLAAWKAIGGPTELEH 101 (106)
T ss_dssp HSCTTSCEEEECSSHHHHHHHHHHHHHTTCSCEEECTTHHHHHHHTTCCEEECC
T ss_pred cCCCCCeEEEEECCCChHHHHHHHHHHcCCcCEEEecCCHHHHHHCCCCCCCCC
Confidence 578899999999999999999999999999999999999999999999988533
No 11
>3ilm_A ALR3790 protein; rhodanese-like, NSR437H, NESG, structural genomics, protein structure initiative, northeast structural genomics consortium; 2.26A {Nostoc SP} PDB: 2kl3_A
Probab=99.89 E-value=5.9e-24 Score=176.47 Aligned_cols=102 Identities=25% Similarity=0.301 Sum_probs=89.6
Q ss_pred eCHHHHHHhhcC--CCcEEEEeCChhhhhhccCCCcEeeCCCCCcccccCCCCCccccccccCCccCCCCCCcccHHHHH
Q 022972 86 LTPREAGYAVQL--SSKTLLDVRPSTERKKAWIKGSIWIPIFDIDDTFDAGSLPQKVTNFVMGGWWSGVPTLSYNKQFLS 163 (289)
Q Consensus 86 Is~~el~~~l~~--~~~vlIDVRs~~Ey~~ghIPGAinIP~~~~~~~~~vgtlyk~~~~~~~~a~~~g~~~~~~~~~f~~ 163 (289)
||++|+.++++. ++.+|||||++.||..||||||+|||+.++.+.
T Consensus 2 Is~~el~~~l~~~~~~~~liDvR~~~e~~~ghIpgAi~ip~~~l~~~--------------------------------- 48 (141)
T 3ilm_A 2 SDAHVLKSRLEWGEPAFTILDVRDRSTYNDGHIMGAMAMPIEDLVDR--------------------------------- 48 (141)
T ss_dssp CCHHHHHHHHHHSCSCEEEEECSCHHHHHHCEETTCEECCGGGHHHH---------------------------------
T ss_pred CCHHHHHHHHhcCCCCEEEEECCCHHHHhCCCCCCCEEcCHHHHHHH---------------------------------
Confidence 789999998863 368999999999999999999999998754322
Q ss_pred HHHhcCCCCCcEEEEcCCCCchHHHHHHHHHccCCCeeEccccHHHHHhCCCCccCCC
Q 022972 164 KVEEKLPKDTDLIVACQKGLRSLAACELLYNAGYRNLFWVQGGLEAAEEEDLVREGPQ 221 (289)
Q Consensus 164 ~~~~~l~k~~~IVvyC~~G~RS~~aa~~L~~~G~~nV~~L~GG~~aw~~~gl~~~~~~ 221 (289)
....++++++|||||++|.||..+++.|+.+||+||+.|+||+.+|+++|+|+++..
T Consensus 49 -~~~~l~~~~~ivvyC~~g~rs~~aa~~L~~~G~~~v~~l~GG~~~W~~~g~p~~~~~ 105 (141)
T 3ilm_A 49 -ASSSLEKSRDIYVYGAGDEQTSQAVNLLRSAGFEHVSELKGGLAAWKAIGGPTEGII 105 (141)
T ss_dssp -HHTTSCTTSEEEEECSSHHHHHHHHHHHHHTTCCSEEECTTHHHHHHHTTCCEEEEC
T ss_pred -HHhcCCCCCeEEEEECCChHHHHHHHHHHHcCCCCEEEecCHHHHHHHCCCCcccCC
Confidence 223578899999999999999999999999999999999999999999999998643
No 12
>1wv9_A Rhodanese homolog TT1651; CDC25, phosphatase, sulfurtransferase, structural genomics, NPPSFA; 2.00A {Thermus thermophilus}
Probab=99.89 E-value=2.5e-24 Score=165.95 Aligned_cols=93 Identities=28% Similarity=0.498 Sum_probs=78.2
Q ss_pred ceeCHHHHHHhhcCCCcEEEEeCChhhhhhccCCCcEeeCCCCCcccccCCCCCccccccccCCccCCCCCCcccHHHHH
Q 022972 84 KVLTPREAGYAVQLSSKTLLDVRPSTERKKAWIKGSIWIPIFDIDDTFDAGSLPQKVTNFVMGGWWSGVPTLSYNKQFLS 163 (289)
Q Consensus 84 ~~Is~~el~~~l~~~~~vlIDVRs~~Ey~~ghIPGAinIP~~~~~~~~~vgtlyk~~~~~~~~a~~~g~~~~~~~~~f~~ 163 (289)
+.|+++|+.+++++ +.++||||++.||+.+|||||+|+|+.++.++.
T Consensus 2 ~~is~~~l~~~~~~-~~~liDvR~~~e~~~ghi~gAi~ip~~~l~~~~-------------------------------- 48 (94)
T 1wv9_A 2 RKVRPEELPALLEE-GVLVVDVRPADRRSTPLPFAAEWVPLEKIQKGE-------------------------------- 48 (94)
T ss_dssp CEECGGGHHHHHHT-TCEEEECCCC--CCSCCSSCCEECCHHHHTTTC--------------------------------
T ss_pred CcCCHHHHHHHHHC-CCEEEECCCHHHHhcccCCCCEECCHHHHHHHH--------------------------------
Confidence 57999999998865 789999999999999999999999987765432
Q ss_pred HHHhcCCCCCcEEEEcCCCCchHHHHHHHHHccCCCeeEccccHHHHHhCC
Q 022972 164 KVEEKLPKDTDLIVACQKGLRSLAACELLYNAGYRNLFWVQGGLEAAEEED 214 (289)
Q Consensus 164 ~~~~~l~k~~~IVvyC~~G~RS~~aa~~L~~~G~~nV~~L~GG~~aw~~~g 214 (289)
..+++ ++||+||++|.||..+++.|+.+||+ |+.|+||+.+|+++|
T Consensus 49 ---~~l~~-~~ivvyC~~g~rs~~a~~~L~~~G~~-v~~l~GG~~~W~~~G 94 (94)
T 1wv9_A 49 ---HGLPR-RPLLLVCEKGLLSQVAALYLEAEGYE-AMSLEGGLQALTQGK 94 (94)
T ss_dssp ---CCCCS-SCEEEECSSSHHHHHHHHHHHHHTCC-EEEETTGGGCC----
T ss_pred ---HhCCC-CCEEEEcCCCChHHHHHHHHHHcCCc-EEEEcccHHHHHhCc
Confidence 24678 89999999999999999999999998 999999999998764
No 13
>3g5j_A Putative ATP/GTP binding protein; N-terminal domain of ATP/GTP binding protein, PSI, MCSG, STR genomics, protein structure initiative; HET: PGE; 1.76A {Clostridium difficile}
Probab=99.89 E-value=7.8e-25 Score=177.30 Aligned_cols=126 Identities=21% Similarity=0.342 Sum_probs=97.1
Q ss_pred CcceeCHHHHHHhhcCCCcEEEEeCChhhhhhccCCCcEeeCCCCCcccccCCCCCccccccccCCccCCCCCCc-ccHH
Q 022972 82 KVKVLTPREAGYAVQLSSKTLLDVRPSTERKKAWIKGSIWIPIFDIDDTFDAGSLPQKVTNFVMGGWWSGVPTLS-YNKQ 160 (289)
Q Consensus 82 ~~~~Is~~el~~~l~~~~~vlIDVRs~~Ey~~ghIPGAinIP~~~~~~~~~vgtlyk~~~~~~~~a~~~g~~~~~-~~~~ 160 (289)
.++.|+++|+.+ .++.+|||||++.||..||||||+|||+.++.++..++++|++.+.+. +...|..... ..++
T Consensus 3 ~~~~i~~~el~~---~~~~~iiDvR~~~e~~~ghIpgA~nip~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~ 77 (134)
T 3g5j_A 3 AMSVIKIEKALK---LDKVIFVDVRTEGEYEEDHILNAINMPLFKNNEHNEVGTIYKMQGKHE--AIQKGFDYVSYKLKD 77 (134)
T ss_dssp --CEECHHHHTT---CTTEEEEECSCHHHHHHCCCTTCEECCSSCHHHHHHHHHHHHHHCHHH--HHHHHHHHHGGGHHH
T ss_pred CccccCHHHHHh---cCCcEEEEcCCHHHHhcCCCCCCEEcCccchhhhhcccceeeecChhH--HHhcccccccccHHH
Confidence 467899999875 568999999999999999999999999998877666667766555421 2222322222 2345
Q ss_pred HHHHHHhcCCCC-CcEEEEc-CCCCchHHHHHHHHHccCCCeeEccccHHHHHhCC
Q 022972 161 FLSKVEEKLPKD-TDLIVAC-QKGLRSLAACELLYNAGYRNLFWVQGGLEAAEEED 214 (289)
Q Consensus 161 f~~~~~~~l~k~-~~IVvyC-~~G~RS~~aa~~L~~~G~~nV~~L~GG~~aw~~~g 214 (289)
+.+.+. .++++ ++||+|| ++|.||..+++.|+.+|| ||+.|+||+.+|++..
T Consensus 78 ~~~~~~-~~~~~~~~ivvyC~~~G~rs~~a~~~L~~~G~-~v~~l~GG~~~W~~~~ 131 (134)
T 3g5j_A 78 IYLQAA-ELALNYDNIVIYCARGGMRSGSIVNLLSSLGV-NVYQLEGGYKAYRNFV 131 (134)
T ss_dssp HHHHHH-HHHTTCSEEEEECSSSSHHHHHHHHHHHHTTC-CCEEETTHHHHHHHHH
T ss_pred HHHHHH-HhccCCCeEEEEECCCChHHHHHHHHHHHcCC-ceEEEeCcHHHHHHHh
Confidence 555544 46777 8999999 699999999999999999 8999999999998753
No 14
>3nhv_A BH2092 protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 2.50A {Bacillus halodurans} PDB: 3o3w_A
Probab=99.89 E-value=4.1e-23 Score=171.87 Aligned_cols=103 Identities=21% Similarity=0.240 Sum_probs=90.9
Q ss_pred ceeCHHHHHHhhcCC--CcEEEEeCChhhhhhccCCCcEeeCCCCCcc-cccCCCCCccccccccCCccCCCCCCcccHH
Q 022972 84 KVLTPREAGYAVQLS--SKTLLDVRPSTERKKAWIKGSIWIPIFDIDD-TFDAGSLPQKVTNFVMGGWWSGVPTLSYNKQ 160 (289)
Q Consensus 84 ~~Is~~el~~~l~~~--~~vlIDVRs~~Ey~~ghIPGAinIP~~~~~~-~~~vgtlyk~~~~~~~~a~~~g~~~~~~~~~ 160 (289)
..|+++|+.++++.+ +.+|||||++.||..||||||+|||+.++.. +.
T Consensus 16 ~~is~~el~~~l~~~~~~~~liDvR~~~ey~~ghIpgAinip~~~l~~~~~----------------------------- 66 (144)
T 3nhv_A 16 YETDIADLSIDIKKGYEGIIVVDVRDAEAYKECHIPTAISIPGNKINEDTT----------------------------- 66 (144)
T ss_dssp TEEEHHHHHHHHHTTCCSEEEEECSCHHHHHHCBCTTCEECCGGGCSTTTT-----------------------------
T ss_pred cccCHHHHHHHHHcCCCCEEEEECcCHHHHhcCCCCCCEECCHHHHhHHHH-----------------------------
Confidence 479999999988765 7899999999999999999999999987653 21
Q ss_pred HHHHHHhcCCCCCcEEEEcCCC--CchHHHHHHHHHccCCCeeEccccHHHHHhCCCCccCCCC
Q 022972 161 FLSKVEEKLPKDTDLIVACQKG--LRSLAACELLYNAGYRNLFWVQGGLEAAEEEDLVREGPQP 222 (289)
Q Consensus 161 f~~~~~~~l~k~~~IVvyC~~G--~RS~~aa~~L~~~G~~nV~~L~GG~~aw~~~gl~~~~~~~ 222 (289)
..++++++|||||++| .||..+++.|+.+|| +|+.|+||+.+|+++|+|+++..+
T Consensus 67 ------~~l~~~~~ivvyC~~g~~~rs~~aa~~L~~~G~-~v~~l~GG~~~W~~~g~pv~~~~~ 123 (144)
T 3nhv_A 67 ------KRLSKEKVIITYCWGPACNGATKAAAKFAQLGF-RVKELIGGIEYWRKENGEVEGTLG 123 (144)
T ss_dssp ------TTCCTTSEEEEECSCTTCCHHHHHHHHHHHTTC-EEEEEESHHHHHHHTTCCCBSSSG
T ss_pred ------hhCCCCCeEEEEECCCCccHHHHHHHHHHHCCC-eEEEeCCcHHHHHHCCCCccCCCC
Confidence 3578899999999988 799999999999999 599999999999999999986443
No 15
>3flh_A Uncharacterized protein LP_1913; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.00A {Lactobacillus plantarum} PDB: 3fnj_A 3i3u_A
Probab=99.88 E-value=2.9e-23 Score=168.08 Aligned_cols=101 Identities=25% Similarity=0.268 Sum_probs=88.6
Q ss_pred cceeCHHHHHHhhcCC--CcEEEEeCChhhh-hhccCCCcEeeCCCCCcccccCCCCCccccccccCCccCCCCCCcccH
Q 022972 83 VKVLTPREAGYAVQLS--SKTLLDVRPSTER-KKAWIKGSIWIPIFDIDDTFDAGSLPQKVTNFVMGGWWSGVPTLSYNK 159 (289)
Q Consensus 83 ~~~Is~~el~~~l~~~--~~vlIDVRs~~Ey-~~ghIPGAinIP~~~~~~~~~vgtlyk~~~~~~~~a~~~g~~~~~~~~ 159 (289)
...|+++|+.++++.+ +.+|||||++.|| +.||||||+|||+.++.++.
T Consensus 14 ~~~is~~el~~~l~~~~~~~~liDvR~~~e~~~~ghIpgA~nip~~~l~~~~---------------------------- 65 (124)
T 3flh_A 14 SLYIDHHTVLADMQNATGKYVVLDVRNAPAQVKKDQIKGAIAMPAKDLATRI---------------------------- 65 (124)
T ss_dssp TTEECHHHHHHHHHHTCCCEEEEECCCSCHHHHCCEETTCEECCHHHHHHHG----------------------------
T ss_pred cceecHHHHHHHHHcCCCCEEEEECCCHHHHHhcCcCCCCEECCHHHHHHHH----------------------------
Confidence 3589999999988754 4899999999998 99999999999986544322
Q ss_pred HHHHHHHhcCCCCCcEEEEcCCCCc--hHHHHHHHHHccCCCeeEccccHHHHHhCCCCccC
Q 022972 160 QFLSKVEEKLPKDTDLIVACQKGLR--SLAACELLYNAGYRNLFWVQGGLEAAEEEDLVREG 219 (289)
Q Consensus 160 ~f~~~~~~~l~k~~~IVvyC~~G~R--S~~aa~~L~~~G~~nV~~L~GG~~aw~~~gl~~~~ 219 (289)
..++++++||+||++|.| |..+++.|+.+||+ |+.|+||+.+|++.++|..+
T Consensus 66 -------~~l~~~~~ivvyC~~g~r~~s~~a~~~L~~~G~~-v~~l~GG~~~W~~~~~p~~~ 119 (124)
T 3flh_A 66 -------GELDPAKTYVVYDWTGGTTLGKTALLVLLSAGFE-AYELAGALEGWKGMQLPLEH 119 (124)
T ss_dssp -------GGSCTTSEEEEECSSSSCSHHHHHHHHHHHHTCE-EEEETTHHHHHHHTTCCEEC
T ss_pred -------hcCCCCCeEEEEeCCCCchHHHHHHHHHHHcCCe-EEEeCCcHHHHHHcCCCCCc
Confidence 357889999999999999 89999999999996 99999999999999999863
No 16
>2k0z_A Uncharacterized protein HP1203; A/B domain, structural genomics, unknown function, PSI-2, PR structure initiative; NMR {Helicobacter pylori}
Probab=99.88 E-value=1.3e-23 Score=166.75 Aligned_cols=99 Identities=18% Similarity=0.289 Sum_probs=84.6
Q ss_pred cceeCHHHHHHhhcCCCcEEEEeCChhhhhhccCCCcEeeCCCCCcccccCCCCCccccccccCCccCCCCCCcccHHHH
Q 022972 83 VKVLTPREAGYAVQLSSKTLLDVRPSTERKKAWIKGSIWIPIFDIDDTFDAGSLPQKVTNFVMGGWWSGVPTLSYNKQFL 162 (289)
Q Consensus 83 ~~~Is~~el~~~l~~~~~vlIDVRs~~Ey~~ghIPGAinIP~~~~~~~~~vgtlyk~~~~~~~~a~~~g~~~~~~~~~f~ 162 (289)
...|+++|+ +.++.+|||||++.||+.||||||+|||+.++.++.
T Consensus 4 ~~~is~~el----~~~~~~liDvR~~~e~~~ghIpgAi~ip~~~l~~~~------------------------------- 48 (110)
T 2k0z_A 4 DYAISLEEV----NFNDFIVVDVRELDEYEELHLPNATLISVNDQEKLA------------------------------- 48 (110)
T ss_dssp TTEEETTTC----CGGGSEEEEEECHHHHHHSBCTTEEEEETTCHHHHH-------------------------------
T ss_pred eeeeCHHHh----ccCCeEEEECCCHHHHhcCcCCCCEEcCHHHHHHHH-------------------------------
Confidence 346788876 245789999999999999999999999998754321
Q ss_pred HHHHhcCCCCCcEEEEcCCCCchHHHHHHHHHccCCCeeEccccHHHHHhCCCCccC
Q 022972 163 SKVEEKLPKDTDLIVACQKGLRSLAACELLYNAGYRNLFWVQGGLEAAEEEDLVREG 219 (289)
Q Consensus 163 ~~~~~~l~k~~~IVvyC~~G~RS~~aa~~L~~~G~~nV~~L~GG~~aw~~~gl~~~~ 219 (289)
.+ ..++++++||+||++|.||..+++.|+.+||++ +.|+||+.+|.++++|++.
T Consensus 49 ~~--~~~~~~~~ivvyC~~G~rs~~aa~~L~~~G~~~-~~l~GG~~~W~~~g~p~~~ 102 (110)
T 2k0z_A 49 DF--LSQHKDKKVLLHCRAGRRALDAAKSMHELGYTP-YYLEGNVYDFEKYGFRMVY 102 (110)
T ss_dssp HH--HHSCSSSCEEEECSSSHHHHHHHHHHHHTTCCC-EEEESCGGGTTTTTCCCBC
T ss_pred Hh--cccCCCCEEEEEeCCCchHHHHHHHHHHCCCCE-EEecCCHHHHHHCCCcEec
Confidence 11 137889999999999999999999999999999 9999999999999999874
No 17
>1t3k_A Arath CDC25, dual-specificity tyrosine phosphatase; cell cycle, phosphorylation, plant, hydrolase; NMR {Arabidopsis thaliana} SCOP: c.46.1.1
Probab=99.88 E-value=6.8e-23 Score=171.98 Aligned_cols=113 Identities=16% Similarity=0.207 Sum_probs=95.2
Q ss_pred hCCCcceeCHHHHHHhhcCCCcEEEEeCChhhhhhccCCCcEeeCCCCCcccccCCCCCccccccccCCccCCCCCCccc
Q 022972 79 RDGKVKVLTPREAGYAVQLSSKTLLDVRPSTERKKAWIKGSIWIPIFDIDDTFDAGSLPQKVTNFVMGGWWSGVPTLSYN 158 (289)
Q Consensus 79 ~~~~~~~Is~~el~~~l~~~~~vlIDVRs~~Ey~~ghIPGAinIP~~~~~~~~~vgtlyk~~~~~~~~a~~~g~~~~~~~ 158 (289)
....++.|+++|+.++++.++.+|||||++.||+.||||||+|||+.++.++
T Consensus 23 ~~~~~~~Is~~el~~~l~~~~~~lIDvR~~~ey~~ghIpgAinip~~~l~~~---------------------------- 74 (152)
T 1t3k_A 23 MARSISYITSTQLLPLHRRPNIAIIDVRDEERNYDGHIAGSLHYASGSFDDK---------------------------- 74 (152)
T ss_dssp CCSSSEEECTTTTTTCCCCTTEEEEEESCSHHHHSSCCCSSEEECCSSSSTT----------------------------
T ss_pred hcCCCceECHHHHHHHhcCCCEEEEECCChhhccCccCCCCEECCHHHHHHH----------------------------
Confidence 3467789999999988876789999999999999999999999999876432
Q ss_pred HHHHHHHHhcCCCCCcEEEEcC-CCCchHHHHHHHHH--------ccCCCeeEccccHHHHHhCCCCccCCCC
Q 022972 159 KQFLSKVEEKLPKDTDLIVACQ-KGLRSLAACELLYN--------AGYRNLFWVQGGLEAAEEEDLVREGPQP 222 (289)
Q Consensus 159 ~~f~~~~~~~l~k~~~IVvyC~-~G~RS~~aa~~L~~--------~G~~nV~~L~GG~~aw~~~gl~~~~~~~ 222 (289)
+.++...++++++|||||+ +|.||..++..|.. .||+||+.|+||+.+|+++|+|+++..+
T Consensus 75 ---~~~l~~~~~~~~~iVvyC~~~G~rs~~aa~~L~~~l~~~L~~~G~~~V~~L~GG~~~W~~~g~p~~~~~~ 144 (152)
T 1t3k_A 75 ---ISHLVQNVKDKDTLVFHSALSQVRGPTCARRLVNYLDEKKEDTGIKNIMILERGFNGWEASGKPVCRCAE 144 (152)
T ss_dssp ---HHHHHHTCCSCCEEEESSSCCSSSHHHHHHHHHHHHHHSSSCCCSSEEEEESSTTHHHHHHSCSSCCCSC
T ss_pred ---HHHHHHhcCCCCEEEEEcCCCCcchHHHHHHHHHHHHHHHHhcCCCcEEEEcCCHHHHHHcCCccccCCC
Confidence 2233345678899999998 99999999988754 8999999999999999999999986443
No 18
>2fsx_A RV0390, COG0607: rhodanese-related sulfurtransferase; RV0390 BR SAD DATA with FBAR, structural genomics, PSI; 1.80A {Mycobacterium tuberculosis}
Probab=99.87 E-value=2e-22 Score=167.81 Aligned_cols=111 Identities=23% Similarity=0.308 Sum_probs=86.8
Q ss_pred CcceeCHHHHHHhhcC-CCcEEEEeCChhhhhh-ccC------CCcEeeCCCCCcccccCCCCCccccccccCCccCCCC
Q 022972 82 KVKVLTPREAGYAVQL-SSKTLLDVRPSTERKK-AWI------KGSIWIPIFDIDDTFDAGSLPQKVTNFVMGGWWSGVP 153 (289)
Q Consensus 82 ~~~~Is~~el~~~l~~-~~~vlIDVRs~~Ey~~-ghI------PGAinIP~~~~~~~~~vgtlyk~~~~~~~~a~~~g~~ 153 (289)
.++.|+++|+.++++. ++.+|||||++.||+. ||| |||+|||+.+ .+.
T Consensus 3 ~~~~is~~el~~~l~~~~~~~liDVR~~~e~~~~ghi~~~g~~pgAv~ip~~~-~~~----------------------- 58 (148)
T 2fsx_A 3 YAGDITPLQAWEMLSDNPRAVLVDVRCEAEWRFVGVPDLSSLGREVVYVEWAT-SDG----------------------- 58 (148)
T ss_dssp CSEEECHHHHHHHHHHCTTCEEEECSCHHHHHHTCEECCGGGTCCCEECCSBC-TTS-----------------------
T ss_pred ccccCCHHHHHHHHhcCCCeEEEECCCHHHHHhcCCCccccCCCCcEEeeeec-ccc-----------------------
Confidence 4568999999998874 6899999999999997 999 9999999876 211
Q ss_pred CCcccHHHHHHHHhc-----CCCCCcEEEEcCCCCchHHHHHHHHHccCCCeeEccccHH------------HHHhCCCC
Q 022972 154 TLSYNKQFLSKVEEK-----LPKDTDLIVACQKGLRSLAACELLYNAGYRNLFWVQGGLE------------AAEEEDLV 216 (289)
Q Consensus 154 ~~~~~~~f~~~~~~~-----l~k~~~IVvyC~~G~RS~~aa~~L~~~G~~nV~~L~GG~~------------aw~~~gl~ 216 (289)
..+++|.+++.+. ++++++|||||++|.||..+++.|+.+||+||+.|+||+. +|+++|+|
T Consensus 59 --~~~~~~~~~l~~~l~~~~~~~~~~ivvyC~~G~rS~~aa~~L~~~G~~~v~~l~GG~~~w~~~~g~~~~~~W~~~glp 136 (148)
T 2fsx_A 59 --THNDNFLAELRDRIPADADQHERPVIFLCRSGNRSIGAAEVATEAGITPAYNVLDGFEGHLDAEGHRGATGWRAVGLP 136 (148)
T ss_dssp --CBCTTHHHHHHHHCC-------CCEEEECSSSSTHHHHHHHHHHTTCCSEEEETTTTTCCCCTTSCCCSSSTTTTTCS
T ss_pred --ccCHHHHHHHHHHHhhccCCCCCEEEEEcCCChhHHHHHHHHHHcCCcceEEEcCChhhhhhhccccccccHHHcCCC
Confidence 1123444444433 3788999999999999999999999999999999999995 56666666
Q ss_pred cc
Q 022972 217 RE 218 (289)
Q Consensus 217 ~~ 218 (289)
++
T Consensus 137 ~~ 138 (148)
T 2fsx_A 137 WR 138 (148)
T ss_dssp EE
T ss_pred CC
Confidence 54
No 19
>1e0c_A Rhodanese, sulfurtransferase; sulfur metabolism, thiosulfate:cyanide sulfurtransferase; 1.8A {Azotobacter vinelandii} SCOP: c.46.1.2 c.46.1.2 PDB: 1h4k_X 1h4m_X
Probab=99.86 E-value=1.4e-21 Score=176.81 Aligned_cols=120 Identities=17% Similarity=0.137 Sum_probs=99.8
Q ss_pred cceeCHHHHHHhhcCCCcEEEEeCChhhhhhccCCCcEeeCCCCCcccccCCCCCccccccccCCccCCCCCCcccHHHH
Q 022972 83 VKVLTPREAGYAVQLSSKTLLDVRPSTERKKAWIKGSIWIPIFDIDDTFDAGSLPQKVTNFVMGGWWSGVPTLSYNKQFL 162 (289)
Q Consensus 83 ~~~Is~~el~~~l~~~~~vlIDVRs~~Ey~~ghIPGAinIP~~~~~~~~~vgtlyk~~~~~~~~a~~~g~~~~~~~~~f~ 162 (289)
...|+++++.++++.++.+|||||++.||..||||||+|||+.++.++. ...+.+.+.++.+
T Consensus 8 ~~~is~~~l~~~l~~~~~~iiDvR~~~ey~~ghIpgA~~ip~~~l~~~~------------------~~~~~~~~~~~~~ 69 (271)
T 1e0c_A 8 PLVIEPADLQARLSAPELILVDLTSAARYAEGHIPGARFVDPKRTQLGQ------------------PPAPGLQPPREQL 69 (271)
T ss_dssp CSEECHHHHHTTTTCTTEEEEECSCHHHHHHCBSTTCEECCGGGGSCCC------------------TTCTTSCCCHHHH
T ss_pred CceeeHHHHHHhccCCCeEEEEcCCcchhhhCcCCCCEECCHHHhccCC------------------CCCCCCCCCHHHH
Confidence 3589999999988767899999999999999999999999998765432 1233445555444
Q ss_pred HHHHhc--CCCCCcEEEEcCCCC-chHHHHHHHHHccCCCeeEccccHHHHHhCCCCccCC
Q 022972 163 SKVEEK--LPKDTDLIVACQKGL-RSLAACELLYNAGYRNLFWVQGGLEAAEEEDLVREGP 220 (289)
Q Consensus 163 ~~~~~~--l~k~~~IVvyC~~G~-RS~~aa~~L~~~G~~nV~~L~GG~~aw~~~gl~~~~~ 220 (289)
++.... ++++++|||||++|. ||..+++.|+.+||+||++|+||+.+|+++|+|+++.
T Consensus 70 ~~~~~~~gi~~~~~vvvyc~~g~~~s~~a~~~L~~~G~~~v~~L~GG~~~w~~~g~p~~~~ 130 (271)
T 1e0c_A 70 ESLFGELGHRPEAVYVVYDDEGGGWAGRFIWLLDVIGQQRYHYLNGGLTAWLAEDRPLSRE 130 (271)
T ss_dssp HHHHHHHTCCTTCEEEEECSSSSHHHHHHHHHHHHTTCCCEEEETTHHHHHHHTTCCCBCC
T ss_pred HHHHHHcCCCCCCeEEEEcCCCCccHHHHHHHHHHcCCCCeEEecCCHHHHHHcCCCccCC
Confidence 444434 789999999999888 9999999999999999999999999999999998853
No 20
>3i2v_A Adenylyltransferase and sulfurtransferase MOCS3; rhodanese, UBA4, structural genomics, ubiquitin biology, structural genomics consortium, SGC; 1.25A {Homo sapiens}
Probab=99.86 E-value=2.3e-22 Score=161.64 Aligned_cols=113 Identities=19% Similarity=0.183 Sum_probs=84.1
Q ss_pred ceeCHHHHHHhhcCC-CcEEEEeCChhhhhhccCCCcEeeCCCCCcccccCCCCCccccccccCCccCCCCCCcccHHHH
Q 022972 84 KVLTPREAGYAVQLS-SKTLLDVRPSTERKKAWIKGSIWIPIFDIDDTFDAGSLPQKVTNFVMGGWWSGVPTLSYNKQFL 162 (289)
Q Consensus 84 ~~Is~~el~~~l~~~-~~vlIDVRs~~Ey~~ghIPGAinIP~~~~~~~~~vgtlyk~~~~~~~~a~~~g~~~~~~~~~f~ 162 (289)
+.||++|+.++++.+ +.+|||||++.||+.||||||+|||+.++.++.. . .....++.+
T Consensus 1 ~~is~~el~~~l~~~~~~~liDvR~~~e~~~ghIpgA~~ip~~~~~~~~~--~------------------~~~~~~~~l 60 (127)
T 3i2v_A 1 SRVSVTDYKRLLDSGAFHLLLDVRPQVEVDICRLPHALHIPLKHLERRDA--E------------------SLKLLKEAI 60 (127)
T ss_dssp CEECHHHHHHHHHHTCCCEEEECSCHHHHHHCCCTTSEECCHHHHHTTCH--H------------------HHHHHHHHH
T ss_pred CCCCHHHHHHHHhCCCCeEEEECCCHHHhhheecCCceeCChHHHhhhhh--h------------------hHHHHHHHH
Confidence 368999999988755 6999999999999999999999999977554320 0 000001111
Q ss_pred HHHHh--cCCCCCcEEEEcCCCCchHHHHHHHHHc------cCCCeeEccccHHHHHhCCCC
Q 022972 163 SKVEE--KLPKDTDLIVACQKGLRSLAACELLYNA------GYRNLFWVQGGLEAAEEEDLV 216 (289)
Q Consensus 163 ~~~~~--~l~k~~~IVvyC~~G~RS~~aa~~L~~~------G~~nV~~L~GG~~aw~~~gl~ 216 (289)
..... ..+++++||+||++|.||..+++.|+.+ ||.||+.|+||+.+|.++..|
T Consensus 61 ~~~~~~~~~~~~~~ivv~C~~G~rs~~a~~~L~~~gg~~~~G~~~v~~l~GG~~~W~~~~~~ 122 (127)
T 3i2v_A 61 WEEKQGTQEGAAVPIYVICKLGNDSQKAVKILQSLSAAQELDPLTVRDVVGGLMAWAAKIDG 122 (127)
T ss_dssp HHHHTTC---CCEEEEEECSSSSHHHHHHHHHHHHHHTTSSSCEEEEEETTHHHHHHHHTCT
T ss_pred hhhcccccCCCCCeEEEEcCCCCcHHHHHHHHHHhhccccCCCceEEEecCCHHHHHHhcCC
Confidence 11111 1234569999999999999999999999 688999999999999986554
No 21
>1vee_A Proline-rich protein family; hypothetical protein, structural genomics, rhodanese domain, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} PDB: 2dcq_A
Probab=99.85 E-value=6.8e-22 Score=162.06 Aligned_cols=110 Identities=19% Similarity=0.207 Sum_probs=91.8
Q ss_pred CcceeCHHHHHHhhc-CCCcEEEEeCChhhhhh-ccC------CCcEeeCCCCCcccccCCCCCccccccccCCccCCCC
Q 022972 82 KVKVLTPREAGYAVQ-LSSKTLLDVRPSTERKK-AWI------KGSIWIPIFDIDDTFDAGSLPQKVTNFVMGGWWSGVP 153 (289)
Q Consensus 82 ~~~~Is~~el~~~l~-~~~~vlIDVRs~~Ey~~-ghI------PGAinIP~~~~~~~~~vgtlyk~~~~~~~~a~~~g~~ 153 (289)
....|+++|+.++++ .++.+|||||++.||+. +|+ |||+|||+.++.
T Consensus 3 ~~~~is~~e~~~~l~~~~~~~liDVR~~~E~~~~~~~~~~g~~~ga~~ip~~~~~------------------------- 57 (134)
T 1vee_A 3 SGSSGSAKNAYTKLGTDDNAQLLDIRATADFRQVGSPNIKGLGKKAVSTVYNGED------------------------- 57 (134)
T ss_dssp CSCBCCHHHHHHHHHHCTTEEEEECSCHHHHHHTCEECCTTTSCCCEECCCCGGG-------------------------
T ss_pred CCCccCHHHHHHHHHhCCCeEEEEcCCHHHHhhcCCCcccccCCceEEeeccccc-------------------------
Confidence 456899999999886 56889999999999986 444 799999975421
Q ss_pred CCcccHHHHHHHHhcC--CCCCcEEEEcCCCCchHHHHHHHHHccCCCeeEccccH---HHHHhCCCCccCC
Q 022972 154 TLSYNKQFLSKVEEKL--PKDTDLIVACQKGLRSLAACELLYNAGYRNLFWVQGGL---EAAEEEDLVREGP 220 (289)
Q Consensus 154 ~~~~~~~f~~~~~~~l--~k~~~IVvyC~~G~RS~~aa~~L~~~G~~nV~~L~GG~---~aw~~~gl~~~~~ 220 (289)
+++|.+++.+.+ +++++|||||++|.||..++..|+.+||+||+.|.||+ .+|+++|+|++.+
T Consensus 58 ----~~~~~~~l~~~~~~~~~~~ivv~C~sG~RS~~aa~~L~~~G~~~v~~l~GG~~~~~~W~~~g~p~~~~ 125 (134)
T 1vee_A 58 ----KPGFLKKLSLKFKDPENTTLYILDKFDGNSELVAELVALNGFKSAYAIKDGAEGPRGWLNSSLPWIEP 125 (134)
T ss_dssp ----HHHHHHHHHTTCSCGGGCEEEEECSSSTTHHHHHHHHHHHTCSEEEECTTTTTSTTSSGGGTCCEECC
T ss_pred ----ChhHHHHHHHHhCCCCCCEEEEEeCCCCcHHHHHHHHHHcCCcceEEecCCccCCcchhhcCCCCCCC
Confidence 235666665444 68899999999999999999999999999999999999 7899999998853
No 22
>1urh_A 3-mercaptopyruvate sulfurtransferase; rhodanese; 2.8A {Escherichia coli} SCOP: c.46.1.2 c.46.1.2
Probab=99.85 E-value=6.3e-21 Score=173.53 Aligned_cols=120 Identities=21% Similarity=0.249 Sum_probs=98.2
Q ss_pred cceeCHHHHHHhhcCCCcEEEEeC----------ChhhhhhccCCCcEeeCCCCCcccccCCCCCccccccccCCccCCC
Q 022972 83 VKVLTPREAGYAVQLSSKTLLDVR----------PSTERKKAWIKGSIWIPIFDIDDTFDAGSLPQKVTNFVMGGWWSGV 152 (289)
Q Consensus 83 ~~~Is~~el~~~l~~~~~vlIDVR----------s~~Ey~~ghIPGAinIP~~~~~~~~~vgtlyk~~~~~~~~a~~~g~ 152 (289)
...|+++++.+++++++.+||||| ++.||..||||||+|+|+.++.+.. ...
T Consensus 3 ~~~is~~~l~~~l~~~~~~iiDvR~~~~~~~~~~~~~e~~~ghIpgAi~ip~~~l~~~~------------------~~~ 64 (280)
T 1urh_A 3 TWFVGADWLAEHIDDPEIQIIDARMASPGQEDRNVAQEYLNGHIPGAVFFDIEALSDHT------------------SPL 64 (280)
T ss_dssp CCEECHHHHHTTTTCTTEEEEECCCCCSSCTTCCHHHHHHHSBCTTCEECCGGGGSCSS------------------SSS
T ss_pred CceeeHHHHHHhcCCCCeEEEEeeccCCcccccchhhhhhhCcCCCCEECCHHHhcCCC------------------CCC
Confidence 358999999998877789999999 7899999999999999998665422 123
Q ss_pred CCCcccHH-HHHHHHhc-CCCCCcEEEEcCCCCc-hHHHHHHHHHccCCCeeEccccHHHHHhCCCCccCC
Q 022972 153 PTLSYNKQ-FLSKVEEK-LPKDTDLIVACQKGLR-SLAACELLYNAGYRNLFWVQGGLEAAEEEDLVREGP 220 (289)
Q Consensus 153 ~~~~~~~~-f~~~~~~~-l~k~~~IVvyC~~G~R-S~~aa~~L~~~G~~nV~~L~GG~~aw~~~gl~~~~~ 220 (289)
+.+.+.++ |.+.+... ++++++|||||++|.| |..+++.|+.+||+||++|+||+.+|.++|+|+++.
T Consensus 65 ~~~~~~~~~~~~~~~~~gi~~~~~ivvyc~~g~~~a~~a~~~L~~~G~~~v~~l~GG~~~W~~~g~p~~~~ 135 (280)
T 1urh_A 65 PHMLPRPETFAVAMRELGVNQDKHLIVYDEGNLFSAPRAWWMLRTFGVEKVSILGGGLAGWQRDDLLLEEG 135 (280)
T ss_dssp SSCCCCHHHHHHHHHHTTCCTTSEEEEECSSSCSSHHHHHHHHHHTTCSCEEEETTHHHHHHHTTCCCBBS
T ss_pred CCCCCCHHHHHHHHHHcCCCCCCeEEEECCCCCccHHHHHHHHHHcCCCCEEEecCCHHHHHHCCCcccCC
Confidence 34444444 44444432 6889999999999998 999999999999999999999999999999998853
No 23
>1e0c_A Rhodanese, sulfurtransferase; sulfur metabolism, thiosulfate:cyanide sulfurtransferase; 1.8A {Azotobacter vinelandii} SCOP: c.46.1.2 c.46.1.2 PDB: 1h4k_X 1h4m_X
Probab=99.83 E-value=1.2e-20 Score=170.84 Aligned_cols=114 Identities=17% Similarity=0.167 Sum_probs=94.1
Q ss_pred ceeCHHHHHHhhcCCCcEEEEeCChhhhh--------hccCCCcEeeCCCCCcccccCCCCCccccccccCCccCCCCCC
Q 022972 84 KVLTPREAGYAVQLSSKTLLDVRPSTERK--------KAWIKGSIWIPIFDIDDTFDAGSLPQKVTNFVMGGWWSGVPTL 155 (289)
Q Consensus 84 ~~Is~~el~~~l~~~~~vlIDVRs~~Ey~--------~ghIPGAinIP~~~~~~~~~vgtlyk~~~~~~~~a~~~g~~~~ 155 (289)
..|+++++.++++.++.+|||||++.||. .||||||+|||+.++.++.. ..
T Consensus 147 ~~i~~~~l~~~l~~~~~~liDvR~~~e~~g~~~~~~~~ghIpgA~~ip~~~~~~~~~---------------------~~ 205 (271)
T 1e0c_A 147 PTASRDYLLGRLGAADLAIWDARSPQEYRGEKVLAAKGGHIPGAVNFEWTAAMDPSR---------------------AL 205 (271)
T ss_dssp TBCCHHHHHHHTTCTTEEEEECSCHHHHTTSSCCSSSCSBCTTCEECCGGGGEEGGG---------------------TT
T ss_pred ccccHHHHHHHhcCCCcEEEEcCChhhcCCccCCCCcCCcCCCceeccHHHhCCCCC---------------------CC
Confidence 46899999999887789999999999999 99999999999987654310 01
Q ss_pred cccHHHHHHHHh-cCCCCCcEEEEcCCCCchHHHHHHHHHccCCCeeEccccHHHHHhC-CCCcc
Q 022972 156 SYNKQFLSKVEE-KLPKDTDLIVACQKGLRSLAACELLYNAGYRNLFWVQGGLEAAEEE-DLVRE 218 (289)
Q Consensus 156 ~~~~~f~~~~~~-~l~k~~~IVvyC~~G~RS~~aa~~L~~~G~~nV~~L~GG~~aw~~~-gl~~~ 218 (289)
...+++.+.+.. .++++++||+||++|.||..++..|+.+||+||+.|+||+.+|.+. ++|++
T Consensus 206 ~~~~~l~~~~~~~~~~~~~~ivvyC~~G~rs~~a~~~L~~~G~~~v~~l~GG~~~W~~~~~~pv~ 270 (271)
T 1e0c_A 206 RIRTDIAGRLEELGITPDKEIVTHCQTHHRSGLTYLIAKALGYPRVKGYAGSWGEWGNHPDTPVE 270 (271)
T ss_dssp EECTTHHHHHHHTTCCTTSEEEEECSSSSHHHHHHHHHHHTTCSCEEECSSHHHHHTTCTTCCCB
T ss_pred CCHHHHHHHHHHcCCCCCCCEEEECCchHHHHHHHHHHHHcCCCCceeeCCcHHHHhcCCCCCCc
Confidence 111344333332 4789999999999999999999999999999999999999999988 99875
No 24
>3hzu_A Thiosulfate sulfurtransferase SSEA; niaid, ssgcid, infectious disease, transferase structural genomics; 2.10A {Mycobacterium tuberculosis} PDB: 3p3a_A
Probab=99.83 E-value=1.9e-20 Score=174.53 Aligned_cols=118 Identities=13% Similarity=0.054 Sum_probs=95.6
Q ss_pred CcceeCHHHHHHhhcCCCcEEEEeCChhh-hhhccCCCcEeeCCCCCcccccCCCCCccccccccCCccCCCCCCcccH-
Q 022972 82 KVKVLTPREAGYAVQLSSKTLLDVRPSTE-RKKAWIKGSIWIPIFDIDDTFDAGSLPQKVTNFVMGGWWSGVPTLSYNK- 159 (289)
Q Consensus 82 ~~~~Is~~el~~~l~~~~~vlIDVRs~~E-y~~ghIPGAinIP~~~~~~~~~vgtlyk~~~~~~~~a~~~g~~~~~~~~- 159 (289)
....|+++++.+++++++.+|||||++.| |+.||||||+|+|+.....+. ...+.+.+
T Consensus 38 ~~~~is~~~l~~~l~~~~~~iiDvR~~~e~y~~gHIpGAi~ip~~~~~~~~--------------------~~~~~~~~~ 97 (318)
T 3hzu_A 38 PERLVTADWLSAHMGAPGLAIVESDEDVLLYDVGHIPGAVKIDWHTDLNDP--------------------RVRDYINGE 97 (318)
T ss_dssp GGGEECHHHHHHHTTCTTEEEEECCSSTTSGGGCBCTTEEECCHHHHHBCS--------------------SSSSBCCHH
T ss_pred CCceecHHHHHHhccCCCEEEEECCCChhHHhcCcCCCCeEeCchhhhccC--------------------cccCCCCHH
Confidence 34589999999999878899999999887 999999999999975322111 11233444
Q ss_pred HHHHHHHhc-CCCCCcEEEEcCCCC-chHHHHHHHHHccCCCeeEccccHHHHHhCCCCccC
Q 022972 160 QFLSKVEEK-LPKDTDLIVACQKGL-RSLAACELLYNAGYRNLFWVQGGLEAAEEEDLVREG 219 (289)
Q Consensus 160 ~f~~~~~~~-l~k~~~IVvyC~~G~-RS~~aa~~L~~~G~~nV~~L~GG~~aw~~~gl~~~~ 219 (289)
+|.+.+.+. ++++++|||||++|. ||..+++.|+.+||+||++|+||+.+|+++|+|+++
T Consensus 98 ~~~~~l~~lgi~~~~~vVvyc~~g~~~a~~a~~~L~~~G~~~V~~L~GG~~~W~~~g~p~~~ 159 (318)
T 3hzu_A 98 QFAELMDRKGIARDDTVVIYGDKSNWWAAYALWVFTLFGHADVRLLNGGRDLWLAERRETTL 159 (318)
T ss_dssp HHHHHHHHTTCCTTCEEEEECSGGGHHHHHHHHHHHHTTCSCEEEETTHHHHHHHTTCCCBC
T ss_pred HHHHHHHHcCCCCCCeEEEECCCCCccHHHHHHHHHHcCCCceEEccCCHHHHhhcCCCccc
Confidence 444444432 789999999999777 999999999999999999999999999999999986
No 25
>3aay_A Putative thiosulfate sulfurtransferase; sulfurtranserase, structural genomics, PSI, structure initiative; 1.90A {Mycobacterium tuberculosis} PDB: 3aax_A 3hwi_A
Probab=99.82 E-value=4.2e-20 Score=167.67 Aligned_cols=117 Identities=13% Similarity=0.059 Sum_probs=94.6
Q ss_pred ceeCHHHHHHhhcCCCcEEEEeCC-hhhhhhccCCCcEeeCCCCCcccccCCCCCccccccccCCccCCCCCCcccHHHH
Q 022972 84 KVLTPREAGYAVQLSSKTLLDVRP-STERKKAWIKGSIWIPIFDIDDTFDAGSLPQKVTNFVMGGWWSGVPTLSYNKQFL 162 (289)
Q Consensus 84 ~~Is~~el~~~l~~~~~vlIDVRs-~~Ey~~ghIPGAinIP~~~~~~~~~vgtlyk~~~~~~~~a~~~g~~~~~~~~~f~ 162 (289)
..|+++++.+++++++.+|||||+ +.||..||||||+|+|+..+.... .+.+.+.++.+
T Consensus 6 ~~is~~~l~~~l~~~~~~liDvR~~~~ey~~ghIpgA~~ip~~~~~~~~--------------------~~~~~~~~~~~ 65 (277)
T 3aay_A 6 VLVSADWAESNLHAPKVVFVEVDEDTSAYDRDHIAGAIKLDWRTDLQDP--------------------VKRDFVDAQQF 65 (277)
T ss_dssp HEECHHHHHTTTTCTTEEEEEEESSSHHHHHCBSTTCEEEETTTTTBCS--------------------SSSSBCCHHHH
T ss_pred ceEcHHHHHHHhCCCCEEEEEcCCChhhHhhCCCCCcEEecccccccCC--------------------CCCCCCCHHHH
Confidence 479999999988777899999998 899999999999999987643211 12233344433
Q ss_pred HHHHhc--CCCCCcEEEEcCCCC-chHHHHHHHHHccCCCeeEccccHHHHHhCCCCccCC
Q 022972 163 SKVEEK--LPKDTDLIVACQKGL-RSLAACELLYNAGYRNLFWVQGGLEAAEEEDLVREGP 220 (289)
Q Consensus 163 ~~~~~~--l~k~~~IVvyC~~G~-RS~~aa~~L~~~G~~nV~~L~GG~~aw~~~gl~~~~~ 220 (289)
++.... ++++++|||||++|. +|..+++.|+.+||+||+.|+||+.+|+++|+|+++.
T Consensus 66 ~~~~~~~gi~~~~~vvvyc~~g~~~s~~a~~~L~~~G~~~v~~l~GG~~~W~~~g~p~~~~ 126 (277)
T 3aay_A 66 SKLLSERGIANEDTVILYGGNNNWFAAYAYWYFKLYGHEKVKLLDGGRKKWELDGRPLSSD 126 (277)
T ss_dssp HHHHHHHTCCTTSEEEEECSGGGHHHHHHHHHHHHTTCCSEEEETTHHHHHHHTTCCCBCC
T ss_pred HHHHHHcCCCCCCeEEEECCCCCchHHHHHHHHHHcCCCcEEEecCCHHHHHHcCCccccC
Confidence 333333 788999999998765 7999999999999999999999999999999998853
No 26
>2jtq_A Phage shock protein E; solution structure rhodanese, stress response, transferase; NMR {Escherichia coli} PDB: 2jtr_A 2jts_A
Probab=99.82 E-value=1.2e-21 Score=148.06 Aligned_cols=80 Identities=25% Similarity=0.437 Sum_probs=67.4
Q ss_pred CcEEEEeCChhhhhhccCCCcEeeCCCCCcccccCCCCCccccccccCCccCCCCCCcccHHHHHHHHhcCCCCCcEEEE
Q 022972 99 SKTLLDVRPSTERKKAWIKGSIWIPIFDIDDTFDAGSLPQKVTNFVMGGWWSGVPTLSYNKQFLSKVEEKLPKDTDLIVA 178 (289)
Q Consensus 99 ~~vlIDVRs~~Ey~~ghIPGAinIP~~~~~~~~~vgtlyk~~~~~~~~a~~~g~~~~~~~~~f~~~~~~~l~k~~~IVvy 178 (289)
+.++||||++.||+.+|||||+|+|+.++.+. +.++ ..+++++||+|
T Consensus 1 ~~~liDvR~~~e~~~ghIpgA~~ip~~~l~~~-------------------------------~~~l--~~~~~~~ivv~ 47 (85)
T 2jtq_A 1 AEHWIDVRVPEQYQQEHVQGAINIPLKEVKER-------------------------------IATA--VPDKNDTVKVY 47 (85)
T ss_dssp CEEEEECSCHHHHTTEEETTCEECCHHHHHHH-------------------------------HHHH--CCCTTSEEEEE
T ss_pred CCEEEECCCHHHHHhCCCCCCEEcCHHHHHHH-------------------------------HHHh--CCCCCCcEEEE
Confidence 46899999999999999999999998654321 1111 24788999999
Q ss_pred cCCCCchHHHHHHHHHccCCCeeEccccHHHHHh
Q 022972 179 CQKGLRSLAACELLYNAGYRNLFWVQGGLEAAEE 212 (289)
Q Consensus 179 C~~G~RS~~aa~~L~~~G~~nV~~L~GG~~aw~~ 212 (289)
|++|.||..+++.|+.+||+||+.+ ||+++|..
T Consensus 48 C~~g~rs~~aa~~L~~~G~~~v~~l-GG~~~w~~ 80 (85)
T 2jtq_A 48 CNAGRQSGQAKEILSEMGYTHVENA-GGLKDIAM 80 (85)
T ss_dssp ESSSHHHHHHHHHHHHTTCSSEEEE-EETTTCCS
T ss_pred cCCCchHHHHHHHHHHcCCCCEEec-cCHHHHhc
Confidence 9999999999999999999999999 99998853
No 27
>1rhs_A Sulfur-substituted rhodanese; transferase, sulfurtransferase; 1.36A {Bos taurus} SCOP: c.46.1.2 c.46.1.2 PDB: 1boh_A 1boi_A 1orb_A 2ora_A 1dp2_A* 1rhd_A
Probab=99.82 E-value=1e-19 Score=167.26 Aligned_cols=120 Identities=14% Similarity=0.124 Sum_probs=97.3
Q ss_pred cceeCHHHHHHhhcC----CCcEEEEeC--------ChhhhhhccCCCcEeeCCCCCcccccCCCCCccccccccCCccC
Q 022972 83 VKVLTPREAGYAVQL----SSKTLLDVR--------PSTERKKAWIKGSIWIPIFDIDDTFDAGSLPQKVTNFVMGGWWS 150 (289)
Q Consensus 83 ~~~Is~~el~~~l~~----~~~vlIDVR--------s~~Ey~~ghIPGAinIP~~~~~~~~~vgtlyk~~~~~~~~a~~~ 150 (289)
...|+++++.++++. ++.+||||| ++.||..||||||+|+|+.++.+.. .
T Consensus 7 ~~~is~~~l~~~l~~~~~~~~~~liDvR~~~~~~~~~~~ey~~gHIpGAi~ip~~~l~~~~------------------~ 68 (296)
T 1rhs_A 7 RALVSTKWLAESVRAGKVGPGLRVLDASWYSPGTREARKEYLERHVPGASFFDIEECRDKA------------------S 68 (296)
T ss_dssp CSEECHHHHHHHHHTTCCBTTEEEEECCCCCTTSCCHHHHHHHSBCTTCEECCTTTSSCTT------------------S
T ss_pred CceeeHHHHHHHHhccccCCCeEEEEecccCcCCcchhhhHhhCcCCCCEEeCHHHhcCCC------------------C
Confidence 458999999999876 578999999 6899999999999999998765421 1
Q ss_pred CCCCCcccHHHHHHHHhc--CCCCCcEEEEcCC--CCc-hHHHHHHHHHccCCCeeEccccHHHHHhCCCCccCC
Q 022972 151 GVPTLSYNKQFLSKVEEK--LPKDTDLIVACQK--GLR-SLAACELLYNAGYRNLFWVQGGLEAAEEEDLVREGP 220 (289)
Q Consensus 151 g~~~~~~~~~f~~~~~~~--l~k~~~IVvyC~~--G~R-S~~aa~~L~~~G~~nV~~L~GG~~aw~~~gl~~~~~ 220 (289)
....+.+.++.+++.... ++++++|||||++ |.+ |..+++.|+.+||+||+.|+||+.+|+++|+|+++.
T Consensus 69 ~~~~~lp~~~~~~~~l~~lgi~~~~~vVvyc~~~~g~~~a~~a~~~L~~~G~~~V~~L~GG~~~W~~~g~p~~~~ 143 (296)
T 1rhs_A 69 PYEVMLPSEAGFADYVGSLGISNDTHVVVYDGDDLGSFYAPRVWWMFRVFGHRTVSVLNGGFRNWLKEGHPVTSE 143 (296)
T ss_dssp SSSSCCCCHHHHHHHHHHTTCCTTCEEEEECCCSSSCSSHHHHHHHHHHTTCCCEEEETTHHHHHHHTTCCCBCS
T ss_pred CCCCCCCCHHHHHHHHHHcCCCCCCeEEEEcCCCCCcchHHHHHHHHHHcCCCcEEEcCCCHHHHHHcCCccccC
Confidence 123444555444444433 6789999999988 776 789999999999999999999999999999998753
No 28
>3olh_A MST, 3-mercaptopyruvate sulfurtransferase; structural genomics, structural genomics consortium, SGC, RH fold; 2.50A {Homo sapiens}
Probab=99.82 E-value=1.1e-19 Score=168.03 Aligned_cols=121 Identities=13% Similarity=0.119 Sum_probs=97.5
Q ss_pred CcceeCHHHHHHhhcCC----CcEEEEeC---------ChhhhhhccCCCcEeeCCCCCcccccCCCCCccccccccCCc
Q 022972 82 KVKVLTPREAGYAVQLS----SKTLLDVR---------PSTERKKAWIKGSIWIPIFDIDDTFDAGSLPQKVTNFVMGGW 148 (289)
Q Consensus 82 ~~~~Is~~el~~~l~~~----~~vlIDVR---------s~~Ey~~ghIPGAinIP~~~~~~~~~vgtlyk~~~~~~~~a~ 148 (289)
....|+++++.++++.+ +.+||||| ++.||..||||||+|||+..+.+.
T Consensus 20 ~~~lIs~~~l~~~l~~~~~~~~~~ilDvR~~~~~~~~~~~~ey~~gHIpGAi~i~~~~~~~~------------------ 81 (302)
T 3olh_A 20 FQSMVSAQWVAEALRAPRAGQPLQLLDASWYLPKLGRDARREFEERHIPGAAFFDIDQCSDR------------------ 81 (302)
T ss_dssp CCCEECHHHHHHHHHCCCSSCCEEEEECCCCCCC--CCHHHHHHHSCCTTCEECCTTTSSCS------------------
T ss_pred CCCccCHHHHHHHhcCcCCCCCEEEEEeecCCCccCcccHHHHhhCcCCCCeEeCHHHhcCc------------------
Confidence 34689999999998765 89999999 789999999999999999865432
Q ss_pred cCCCCCCcccHHHHHHHHhc--CCCCCcEEEEcC---CCCchHHHHHHHHHccCCCeeEccccHHHHHhCCCCccCC
Q 022972 149 WSGVPTLSYNKQFLSKVEEK--LPKDTDLIVACQ---KGLRSLAACELLYNAGYRNLFWVQGGLEAAEEEDLVREGP 220 (289)
Q Consensus 149 ~~g~~~~~~~~~f~~~~~~~--l~k~~~IVvyC~---~G~RS~~aa~~L~~~G~~nV~~L~GG~~aw~~~gl~~~~~ 220 (289)
....+.+.+.++.+++.... ++++++|||||+ ++.+|..+++.|+.+||++|++|+||+.+|+++|+|+++.
T Consensus 82 ~~~~~~~lp~~~~~~~~~~~lgi~~~~~VVvyc~~~~g~~~a~ra~~~L~~~G~~~V~~L~GG~~~W~~~g~p~~~~ 158 (302)
T 3olh_A 82 TSPYDHMLPGAEHFAEYAGRLGVGAATHVVIYDASDQGLYSAPRVWWMFRAFGHHAVSLLDGGLRHWLRQNLPLSSG 158 (302)
T ss_dssp SCSSSSCCCCHHHHHHHHHHTTCCSSCEEEEECCCTTSCSSHHHHHHHHHHTTCCCEEEETTHHHHHHHSCCC-CCS
T ss_pred CCCCCCCCCCHHHHHHHHHHcCCCCCCEEEEEeCCCCCcchHHHHHHHHHHcCCCcEEECCCCHHHHHHcCCCcccC
Confidence 12345566655544444444 478999999996 4457999999999999999999999999999999998853
No 29
>2j6p_A SB(V)-AS(V) reductase; arsenate reductase, antimonate reductase, CDC25 phosphatase, rhodanese, C-MYC epitope, oxidoreductase; HET: EPE; 2.15A {Leishmania major}
Probab=99.82 E-value=2.7e-20 Score=155.88 Aligned_cols=120 Identities=18% Similarity=0.255 Sum_probs=91.7
Q ss_pred CcceeCHHHHHHhhcCC----CcEEEEeCChhhhhhccCCCcEeeCCCCCcccccCCCCCccccccccCCccCCCCCCcc
Q 022972 82 KVKVLTPREAGYAVQLS----SKTLLDVRPSTERKKAWIKGSIWIPIFDIDDTFDAGSLPQKVTNFVMGGWWSGVPTLSY 157 (289)
Q Consensus 82 ~~~~Is~~el~~~l~~~----~~vlIDVRs~~Ey~~ghIPGAinIP~~~~~~~~~vgtlyk~~~~~~~~a~~~g~~~~~~ 157 (289)
.++.|+++++.++++.+ +.+|||||++ ||+.||||||+|||+.++.++ .
T Consensus 3 ~~~~Is~~el~~~l~~~~~~~~~~lIDvR~~-ey~~gHIpGAinip~~~l~~~--------------------------~ 55 (152)
T 2j6p_A 3 NYTYIKPEELVELLDNPDSLVKAAVIDCRDS-DRDCGFIVNSINMPTISCTEE--------------------------M 55 (152)
T ss_dssp CCEEECHHHHHHHHHSHHHHHTEEEEECCST-TGGGCBCTTCEECCTTTCCHH--------------------------H
T ss_pred CcCccCHHHHHHHHhCCCCCCCEEEEEcCcH-HhCcCcCCCcEECChhHhhHH--------------------------H
Confidence 46789999999988763 7899999999 999999999999999765421 0
Q ss_pred cHHHHHHHHhcCCCCC-cEEEEc-CCCCchHHHH----HHHHHccC--CCeeEccccHHHHHhCCCCccCCCCCcccccc
Q 022972 158 NKQFLSKVEEKLPKDT-DLIVAC-QKGLRSLAAC----ELLYNAGY--RNLFWVQGGLEAAEEEDLVREGPQPLKFAGIG 229 (289)
Q Consensus 158 ~~~f~~~~~~~l~k~~-~IVvyC-~~G~RS~~aa----~~L~~~G~--~nV~~L~GG~~aw~~~gl~~~~~~~~~~~~~~ 229 (289)
.+++.+.+.. +++ .||+|| ++|.||..++ +.|+.+|| ++|+.|+||+.+|.+++.+.. .+..+..+.
T Consensus 56 ~~~l~~~l~~---~~~~~vV~yC~~sg~rs~~aa~~~~~~L~~~G~~~~~v~~L~GG~~~W~~~g~~~~--~~~~yv~m~ 130 (152)
T 2j6p_A 56 YEKLAKTLFE---EKKELAVFHCAQSLVRAPKGANRFALAQKKLGYVLPAVYVLRGGWEAFYHMYGDVR--PDLMYVKLG 130 (152)
T ss_dssp HHHHHHHHHH---TTCCEEEEECSSSSSHHHHHHHHHHHHHHHHTCCCSEEEEETTHHHHHHHHHTTTC--GGGCEEEET
T ss_pred HHHHHHHhcc---cCCCEEEEEcCCCCCccHHHHHHHHHHHHHcCCCCCCEEEEcCcHHHHHHHcCCCC--CCCeeEecC
Confidence 1222222221 334 577789 7999998888 77888997 589999999999999888764 355666777
Q ss_pred cccc
Q 022972 230 GLSE 233 (289)
Q Consensus 230 G~t~ 233 (289)
+.++
T Consensus 131 ~~~~ 134 (152)
T 2j6p_A 131 PEQK 134 (152)
T ss_dssp TTTE
T ss_pred Cccc
Confidence 6653
No 30
>1c25_A CDC25A; hydrolase, cell cycle phosphatase,dual specificity protein phosphatase, CDK2; 2.30A {Homo sapiens} SCOP: c.46.1.1
Probab=99.81 E-value=9.1e-21 Score=159.35 Aligned_cols=108 Identities=16% Similarity=0.235 Sum_probs=87.0
Q ss_pred CCcceeCHHHHHHhhcC------CCcEEEEeCChhhhhhccCCCcEeeCCCCCcccccCCCCCccccccccCCccCCCCC
Q 022972 81 GKVKVLTPREAGYAVQL------SSKTLLDVRPSTERKKAWIKGSIWIPIFDIDDTFDAGSLPQKVTNFVMGGWWSGVPT 154 (289)
Q Consensus 81 ~~~~~Is~~el~~~l~~------~~~vlIDVRs~~Ey~~ghIPGAinIP~~~~~~~~~vgtlyk~~~~~~~~a~~~g~~~ 154 (289)
..++.|+++++.++++. ++.+|||||++.||+.||||||+|||+.++.++..
T Consensus 20 ~~~~~is~~el~~~l~~~~~~~~~~~~liDvR~~~e~~~ghIpgAinip~~~~~~~~~---------------------- 77 (161)
T 1c25_A 20 QDLKYISPEIMASVLNGKFANLIKEFVIIDCRYPYEYEGGHIKGAVNLHMEEEVEDFL---------------------- 77 (161)
T ss_dssp TTSCEECHHHHHHHHTTTTTTTEEEEEEEECSCHHHHHTCEETTCEECCSHHHHHHHT----------------------
T ss_pred CCcceeCHHHHHHHHhccccccCCCeEEEECCChHHccCCcccCcEeCChhHHHHHHH----------------------
Confidence 45678999999999875 37899999999999999999999999876432210
Q ss_pred CcccHHHHHHHHhcC-CCCCcE--EEEcC-CCCchHHHHHHHHHc----------cCCCeeEccccHHHHHhCCCCccC
Q 022972 155 LSYNKQFLSKVEEKL-PKDTDL--IVACQ-KGLRSLAACELLYNA----------GYRNLFWVQGGLEAAEEEDLVREG 219 (289)
Q Consensus 155 ~~~~~~f~~~~~~~l-~k~~~I--VvyC~-~G~RS~~aa~~L~~~----------G~~nV~~L~GG~~aw~~~gl~~~~ 219 (289)
.+. ..+ ++++++ |+||+ +|.||..++..|+.. ||+||+.|+||+.+|.+++.|+..
T Consensus 78 --------~~~-~~~~~~~~~ivvv~yC~~sg~rs~~aa~~L~~~~~~~~~l~~~G~~~v~~l~GG~~~W~~~~~~~~~ 147 (161)
T 1c25_A 78 --------LKK-PIVPTDGKRVIVVFHCEFSSERGPRMCRYVRERDRLGNEYPKLHYPELYVLKGGYKEFFMKCQSYCE 147 (161)
T ss_dssp --------TTS-CCCCCTTSEEEEEEECSSSSSHHHHHHHHHHHHHHHTSSTTCCSSCCEEEETTHHHHHHHHHGGGEE
T ss_pred --------hhh-hhccCCCCCeEEEEEcCCCCcchHHHHHHHHHHHHhhhhccccCCceEEEEcCCHHHHHHHcccccC
Confidence 000 012 567785 67898 999999999999864 999999999999999998888764
No 31
>1rhs_A Sulfur-substituted rhodanese; transferase, sulfurtransferase; 1.36A {Bos taurus} SCOP: c.46.1.2 c.46.1.2 PDB: 1boh_A 1boi_A 1orb_A 2ora_A 1dp2_A* 1rhd_A
Probab=99.81 E-value=8.8e-20 Score=167.70 Aligned_cols=115 Identities=17% Similarity=0.131 Sum_probs=94.5
Q ss_pred cceeCHHHHHHhhcCCCcEEEEeCChhhh------------hhccCCCcEeeCCCCCcccccCCCCCccccccccCCccC
Q 022972 83 VKVLTPREAGYAVQLSSKTLLDVRPSTER------------KKAWIKGSIWIPIFDIDDTFDAGSLPQKVTNFVMGGWWS 150 (289)
Q Consensus 83 ~~~Is~~el~~~l~~~~~vlIDVRs~~Ey------------~~ghIPGAinIP~~~~~~~~~vgtlyk~~~~~~~~a~~~ 150 (289)
...|+++|+.++++.++.+|||||++.|| ..||||||+|||+.++.+..
T Consensus 159 ~~~i~~~e~~~~~~~~~~~liDvR~~~e~~G~~~~~~~~~~~~ghIpgA~nip~~~l~~~~------------------- 219 (296)
T 1rhs_A 159 SLLKTYEQVLENLESKRFQLVDSRAQGRYLGTQPEPDAVGLDSGHIRGSVNMPFMNFLTED------------------- 219 (296)
T ss_dssp GGEECHHHHHHHHHHCCSEEEECSCHHHHHTSSCCSSSSSCCCCEETTCEECCGGGGBCTT-------------------
T ss_pred ceEEcHHHHHHHhcCCCceEEeCCchhhcccccCCcccCCCcCccCCCCEeecHHHhcCCC-------------------
Confidence 36799999999887778999999999999 78999999999998764321
Q ss_pred CCCCCcccHHHHHHHHh--cCCCCCcEEEEcCCCCchHHHHHHHHHccCCCeeEccccHHHHHh-CCCCccC
Q 022972 151 GVPTLSYNKQFLSKVEE--KLPKDTDLIVACQKGLRSLAACELLYNAGYRNLFWVQGGLEAAEE-EDLVREG 219 (289)
Q Consensus 151 g~~~~~~~~~f~~~~~~--~l~k~~~IVvyC~~G~RS~~aa~~L~~~G~~nV~~L~GG~~aw~~-~gl~~~~ 219 (289)
+..+.++.+++... .++++++||+||++|.||..++..|+.+||+||+.|+||+.+|.+ .++|++.
T Consensus 220 ---~~~~~~~~l~~~~~~~~~~~~~~ivv~C~sG~rs~~a~~~L~~~G~~~v~~~~GG~~~W~~~~~~pv~~ 288 (296)
T 1rhs_A 220 ---GFEKSPEELRAMFEAKKVDLTKPLIATCRKGVTACHIALAAYLCGKPDVAIYDGSWFEWFHRAPPETWV 288 (296)
T ss_dssp ---SCBCCHHHHHHHHHHTTCCTTSCEEEECSSSSTHHHHHHHHHHTTCCCCEEESSHHHHHHHHSCGGGEE
T ss_pred ---CcCCCHHHHHHHHHHcCCCCCCCEEEECCcHHHHHHHHHHHHHcCCCCceeeCCcHHHHhcCCCCCccc
Confidence 11122333333332 378899999999999999999999999999999999999999988 7999874
No 32
>1urh_A 3-mercaptopyruvate sulfurtransferase; rhodanese; 2.8A {Escherichia coli} SCOP: c.46.1.2 c.46.1.2
Probab=99.80 E-value=5.7e-20 Score=167.22 Aligned_cols=113 Identities=18% Similarity=0.224 Sum_probs=85.6
Q ss_pred ceeCHHHHHHhhcCCCcEEEEeCChhhh-----------hhccCCCcEeeCCCCCcccccCCCCCccccccccCCccCCC
Q 022972 84 KVLTPREAGYAVQLSSKTLLDVRPSTER-----------KKAWIKGSIWIPIFDIDDTFDAGSLPQKVTNFVMGGWWSGV 152 (289)
Q Consensus 84 ~~Is~~el~~~l~~~~~vlIDVRs~~Ey-----------~~ghIPGAinIP~~~~~~~~~vgtlyk~~~~~~~~a~~~g~ 152 (289)
..|+++++.++++.++.+|||||++.|| ..||||||+|||+.++.+.
T Consensus 152 ~~i~~~e~~~~~~~~~~~liDvR~~~e~~G~~~~~~~~~~~ghIpgA~nip~~~~~~~---------------------- 209 (280)
T 1urh_A 152 AVVKVTDVLLASHENTAQIIDARPAARFNAEVDEPRPGLRRGHIPGALNVPWTELVRE---------------------- 209 (280)
T ss_dssp GBCCHHHHHHHHHHTCSEEEECSCHHHHSSCCCC----CCSSSCTTCEECCGGGGBSS----------------------
T ss_pred cEEcHHHHHHHhcCCCcEEEeCCchhhcccccCCCCCCCcCccCCCceEeeHHHhhcC----------------------
Confidence 4599999999887778999999999999 6899999999999876531
Q ss_pred CCCcccHHHHHHHHh--cCCCCCcEEEEcCCCCchHHHHHHHHHccCCCeeEccccHHHHHh-CCCCccC
Q 022972 153 PTLSYNKQFLSKVEE--KLPKDTDLIVACQKGLRSLAACELLYNAGYRNLFWVQGGLEAAEE-EDLVREG 219 (289)
Q Consensus 153 ~~~~~~~~f~~~~~~--~l~k~~~IVvyC~~G~RS~~aa~~L~~~G~~nV~~L~GG~~aw~~-~gl~~~~ 219 (289)
...+.++.+.+... .++++++||+||++|.||..++..|+.+||+||+.|+||+.+|.+ .++|+++
T Consensus 210 -~~~~~~~~l~~~~~~~~~~~~~~ivv~C~~G~rs~~a~~~L~~~G~~~v~~~~GG~~~W~~~~~~Pv~~ 278 (280)
T 1urh_A 210 -GELKTTDELDAIFFGRGVSYDKPIIVSCGSGVTAAVVLLALATLDVPNVKLYDGAWSEWGARADLPVEP 278 (280)
T ss_dssp -SSBCCHHHHHHHHHTTTCCSSSCEEEECCSSSTHHHHHHHHHHTTCSSCEEECCSCCC-----------
T ss_pred -CccCCHHHHHHHHHHcCCCCCCCEEEECChHHHHHHHHHHHHHcCCCCceeeCChHHHHhcCCCCCcee
Confidence 11122334443333 468899999999999999999999999999999999999999987 5888863
No 33
>4f67_A UPF0176 protein LPG2838; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium; 1.79A {Legionella pneumophila subsp}
Probab=99.80 E-value=7e-20 Score=167.24 Aligned_cols=105 Identities=19% Similarity=0.243 Sum_probs=88.9
Q ss_pred CCcceeCHHHHHHhhcCCCcEEEEeCChhhhhhccCCCcEeeCCCCCcccccCCCCCccccccccCCccCCCCCCcccHH
Q 022972 81 GKVKVLTPREAGYAVQLSSKTLLDVRPSTERKKAWIKGSIWIPIFDIDDTFDAGSLPQKVTNFVMGGWWSGVPTLSYNKQ 160 (289)
Q Consensus 81 ~~~~~Is~~el~~~l~~~~~vlIDVRs~~Ey~~ghIPGAinIP~~~~~~~~~vgtlyk~~~~~~~~a~~~g~~~~~~~~~ 160 (289)
...+.|+++|+.+++++++.+|||||++.||+.||||||+|+|+.++.+. ++
T Consensus 119 ~~~~~Is~~el~~ll~~~~~vlIDVR~~~Ey~~GHIpGAiniP~~~~~~~----------------------------~~ 170 (265)
T 4f67_A 119 NAGTYLSPEEWHQFIQDPNVILLDTRNDYEYELGTFKNAINPDIENFREF----------------------------PD 170 (265)
T ss_dssp CTTCEECHHHHHHHTTCTTSEEEECSCHHHHHHEEETTCBCCCCSSGGGH----------------------------HH
T ss_pred CCCceECHHHHHHHhcCCCeEEEEeCCchHhhcCcCCCCEeCCHHHHHhh----------------------------HH
Confidence 45679999999999988899999999999999999999999998775431 12
Q ss_pred HHHHHHhcCCCCCcEEEEcCCCCchHHHHHHHHHccCCCeeEccccHHHHHhCC
Q 022972 161 FLSKVEEKLPKDTDLIVACQKGLRSLAACELLYNAGYRNLFWVQGGLEAAEEED 214 (289)
Q Consensus 161 f~~~~~~~l~k~~~IVvyC~~G~RS~~aa~~L~~~G~~nV~~L~GG~~aw~~~g 214 (289)
.+.+.. ..+++++||+||++|.||..+++.|+.+||+||+.|+||+.+|.++.
T Consensus 171 ~l~~~l-~~~kdk~IVvyC~~G~RS~~Aa~~L~~~Gf~nV~~L~GGi~aW~~~~ 223 (265)
T 4f67_A 171 YVQRNL-IDKKDKKIAMFCTGGIRCEKTTAYMKELGFEHVYQLHDGILNYLESI 223 (265)
T ss_dssp HHHHHT-GGGTTSCEEEECSSSHHHHHHHHHHHHHTCSSEEEETTHHHHHHHHS
T ss_pred HHHHhh-hhCCCCeEEEEeCCChHHHHHHHHHHHcCCCCEEEecCHHHHHHHhc
Confidence 222111 23688999999999999999999999999999999999999998863
No 34
>2vsw_A Dual specificity protein phosphatase 16; hydrolase, dual specificity phosphatase, nucleus, cytoplasm, rhodanese domain, CAsp8; 2.20A {Homo sapiens} PDB: 3tg3_A
Probab=99.80 E-value=2.2e-20 Score=155.60 Aligned_cols=115 Identities=12% Similarity=0.099 Sum_probs=83.7
Q ss_pred ceeCHHHHHHhhcC--CCcEEEEeCChhhhhhccCCCcEeeCCCCCc-ccccCCCCCccccccccCCccCCCCCCcccHH
Q 022972 84 KVLTPREAGYAVQL--SSKTLLDVRPSTERKKAWIKGSIWIPIFDID-DTFDAGSLPQKVTNFVMGGWWSGVPTLSYNKQ 160 (289)
Q Consensus 84 ~~Is~~el~~~l~~--~~~vlIDVRs~~Ey~~ghIPGAinIP~~~~~-~~~~vgtlyk~~~~~~~~a~~~g~~~~~~~~~ 160 (289)
+.|+++|+.++++. ++.+|||||++.||+.||||||+|||+.++. .+..-+. ...++
T Consensus 4 ~~Is~~~l~~~l~~~~~~~~iiDvR~~~ey~~gHIpgAinip~~~l~~~~~~~~~--------------------~~~~~ 63 (153)
T 2vsw_A 4 TQIVTERLVALLESGTEKVLLIDSRPFVEYNTSHILEAININCSKLMKRRLQQDK--------------------VLITE 63 (153)
T ss_dssp EEECHHHHHHHHTSTTCCEEEEECSCHHHHHHCEETTCEECCCCHHHHHHHHTTS--------------------SCHHH
T ss_pred ccccHHHHHHHHhcCCCCEEEEECCCHHHhccCccCCCeeeChHHHHHhhhhcCC--------------------cCHHH
Confidence 57999999998863 5789999999999999999999999998652 2110000 00111
Q ss_pred HH-HHHHh--cCCCCCcEEEEcCCCCchHHH------HHHHHHc--cCCCeeEccccHHHHHhCCCCcc
Q 022972 161 FL-SKVEE--KLPKDTDLIVACQKGLRSLAA------CELLYNA--GYRNLFWVQGGLEAAEEEDLVRE 218 (289)
Q Consensus 161 f~-~~~~~--~l~k~~~IVvyC~~G~RS~~a------a~~L~~~--G~~nV~~L~GG~~aw~~~gl~~~ 218 (289)
++ .+..+ .++++++|||||++|.||..+ ++.|+.+ ||++|+.|+||+.+|.+.+.++.
T Consensus 64 ll~~~~~~~~~~~~~~~iVvyc~~g~~s~~a~~~~~~~~~L~~l~~G~~~v~~L~GG~~~W~~~~~~~~ 132 (153)
T 2vsw_A 64 LIQHSAKHKVDIDCSQKVVVYDQSSQDVASLSSDCFLTVLLGKLEKSFNSVHLLAGGFAEFSRCFPGLC 132 (153)
T ss_dssp HHHHSCSSCCCCCTTSEEEEECSSCCCGGGSCTTSHHHHHHHHHHHHCSCEEEETTHHHHHHHHCGGGE
T ss_pred hcCchhhhhhccCCCCeEEEEeCCCCcccccccchHHHHHHHHHHhCCCcEEEEeChHHHHHHhChhhh
Confidence 11 00011 246788999999999988766 5777744 99999999999999988755444
No 35
>1uar_A Rhodanese; sulfurtransferase, riken structural genomics/PROT initiative, RSGI, structural genomics, transferase; 1.70A {Thermus thermophilus} SCOP: c.46.1.2 c.46.1.2
Probab=99.80 E-value=5.3e-20 Score=167.67 Aligned_cols=117 Identities=15% Similarity=0.041 Sum_probs=94.2
Q ss_pred cceeCHHHHHHhhcCCCcEEEEeC-ChhhhhhccCCCcEeeCCCCCcccccCCCCCccccccccCCccCCCCCCcccHH-
Q 022972 83 VKVLTPREAGYAVQLSSKTLLDVR-PSTERKKAWIKGSIWIPIFDIDDTFDAGSLPQKVTNFVMGGWWSGVPTLSYNKQ- 160 (289)
Q Consensus 83 ~~~Is~~el~~~l~~~~~vlIDVR-s~~Ey~~ghIPGAinIP~~~~~~~~~vgtlyk~~~~~~~~a~~~g~~~~~~~~~- 160 (289)
...|+++++.++++.++.+||||| ++.||..||||||+|+|+..+... ..+.+.+.++
T Consensus 7 ~~~is~~~l~~~l~~~~~~liDvR~~~~e~~~ghIpgA~~ip~~~~~~~--------------------~~~~~~~~~~~ 66 (285)
T 1uar_A 7 EVLVSTDWVQEHLEDPKVRVLEVDEDILLYDTGHIPGAQKIDWQRDFWD--------------------PVVRDFISEEE 66 (285)
T ss_dssp GGEECHHHHHTTTTCTTEEEEEECSSTTHHHHCBCTTCEEECHHHHHBC--------------------SSSSSBCCHHH
T ss_pred CceEcHHHHHHhcCCCCEEEEEcCCCcchhhcCcCCCCEECCchhhccC--------------------CcccCCCCHHH
Confidence 458999999998877789999999 789999999999999998642111 0122334443
Q ss_pred HHHHHHhc-CCCCCcEEEEcCCCC-chHHHHHHHHHccCCCeeEccccHHHHHhCCCCccC
Q 022972 161 FLSKVEEK-LPKDTDLIVACQKGL-RSLAACELLYNAGYRNLFWVQGGLEAAEEEDLVREG 219 (289)
Q Consensus 161 f~~~~~~~-l~k~~~IVvyC~~G~-RS~~aa~~L~~~G~~nV~~L~GG~~aw~~~gl~~~~ 219 (289)
|.+.+... ++++++|||||++|. +|..+++.|+.+||+||++|+||+.+|.++|+|++.
T Consensus 67 ~~~~~~~~gi~~~~~ivvyc~~g~~~s~~a~~~L~~~G~~~v~~l~GG~~~W~~~g~p~~~ 127 (285)
T 1uar_A 67 FAKLMERLGISNDTTVVLYGDKNNWWAAYAFWFFKYNGHKDVRLMNGGRQKWVEEGRPLTT 127 (285)
T ss_dssp HHHHHHHTTCCTTCEEEEECHHHHHHHHHHHHHHHHTTCSCEEEETTHHHHHHHHTCCCBC
T ss_pred HHHHHHHcCCCCCCeEEEECCCCCccHHHHHHHHHHcCCCCeEEecCCHHHHHHCCCcccC
Confidence 44444332 688999999999887 799999999999999999999999999999999875
No 36
>3olh_A MST, 3-mercaptopyruvate sulfurtransferase; structural genomics, structural genomics consortium, SGC, RH fold; 2.50A {Homo sapiens}
Probab=99.80 E-value=8.4e-20 Score=168.89 Aligned_cols=113 Identities=15% Similarity=0.142 Sum_probs=93.0
Q ss_pred cceeCHHHHHHhhcCCCcEEEEeCChhhh-----------hhccCCCcEeeCCCCCcccccCCCCCccccccccCCccCC
Q 022972 83 VKVLTPREAGYAVQLSSKTLLDVRPSTER-----------KKAWIKGSIWIPIFDIDDTFDAGSLPQKVTNFVMGGWWSG 151 (289)
Q Consensus 83 ~~~Is~~el~~~l~~~~~vlIDVRs~~Ey-----------~~ghIPGAinIP~~~~~~~~~vgtlyk~~~~~~~~a~~~g 151 (289)
...++++++.+.++.++.+|||||++.|| ..||||||+|||+.++.++.
T Consensus 174 ~~~i~~~e~~~~~~~~~~~liDvR~~~ef~G~~~~p~~~~~~GhIpGAiniP~~~l~~~~-------------------- 233 (302)
T 3olh_A 174 AFIKTYEDIKENLESRRFQVVDSRATGRFRGTEPEPRDGIEPGHIPGTVNIPFTDFLSQE-------------------- 233 (302)
T ss_dssp GGEECHHHHHHHHHHCCSEEEECSCHHHHHTSSCCSSTTCCCCCCTTCEECCGGGGBCSS--------------------
T ss_pred cceecHHHHHHhhcCCCcEEEecCCHHHccccccCCCcCCcCccCCCceecCHHHhcCCC--------------------
Confidence 34789999999887778999999999999 78999999999998765431
Q ss_pred CCCCcccH-HHHHHHHh-cCCCCCcEEEEcCCCCchHHHHHHHHHccCCCeeEccccHHHHHhCCCCc
Q 022972 152 VPTLSYNK-QFLSKVEE-KLPKDTDLIVACQKGLRSLAACELLYNAGYRNLFWVQGGLEAAEEEDLVR 217 (289)
Q Consensus 152 ~~~~~~~~-~f~~~~~~-~l~k~~~IVvyC~~G~RS~~aa~~L~~~G~~nV~~L~GG~~aw~~~gl~~ 217 (289)
...+.+ ++.+.+.+ .++++++||+||++|.||..++..|+.+||+||+.|+||+.+|.+.++|.
T Consensus 234 --~~~~~~~~l~~~~~~~~~~~~~~iv~yC~sG~rs~~a~~~L~~~G~~~v~~~~Gg~~~W~~~~~P~ 299 (302)
T 3olh_A 234 --GLEKSPEEIRHLFQEKKVDLSKPLVATCGSGVTACHVALGAYLCGKPDVPIYDGSWVEWYMRARPE 299 (302)
T ss_dssp --SCBCCHHHHHHHHHHTTCCTTSCEEEECSSSSTTHHHHHHHHTTTCCCCCEESSHHHHHHHHHCCC
T ss_pred --CccCCHHHHHHHHHhcCCCCCCCEEEECCChHHHHHHHHHHHHcCCCCeeEeCCcHHHHhhccCCC
Confidence 111233 33333333 47889999999999999999999999999999999999999999988764
No 37
>2ouc_A Dual specificity protein phosphatase 10; rhodanese fold, hydrolase; 2.20A {Homo sapiens}
Probab=99.80 E-value=4.9e-20 Score=150.15 Aligned_cols=114 Identities=18% Similarity=0.212 Sum_probs=79.0
Q ss_pred ceeCHHHHHH--------hhcCCCcEEEEeCChhhhhhccCCCcEeeCCCCCcccccCCCCCccccccccCCccCCCCCC
Q 022972 84 KVLTPREAGY--------AVQLSSKTLLDVRPSTERKKAWIKGSIWIPIFDIDDTFDAGSLPQKVTNFVMGGWWSGVPTL 155 (289)
Q Consensus 84 ~~Is~~el~~--------~l~~~~~vlIDVRs~~Ey~~ghIPGAinIP~~~~~~~~~vgtlyk~~~~~~~~a~~~g~~~~ 155 (289)
+.|+++|+.+ .++.++.+|||||++.||+.||||||+|+|+.++..+... . ...
T Consensus 1 k~Is~~~l~~~l~~~~~~~l~~~~~~iiDvR~~~e~~~ghIpgA~~ip~~~~~~~~~~----------------~--~~~ 62 (142)
T 2ouc_A 1 KIIYPNDLAKKMTKCSKSHLPSQGPVIIDCRPFMEYNKSHIQGAVHINCADKISRRRL----------------Q--QGK 62 (142)
T ss_dssp CEECHHHHHHHHHC----------CEEEECSCHHHHHHEEETTCEECCCSSHHHHHHH----------------H--TTS
T ss_pred CccCHHHHHHHHHhcccccCCCCCCEEEEeCCHHHhhhhhccCccccCccHHHHHHHh----------------h--cCC
Confidence 3689999998 5556689999999999999999999999999875321000 0 000
Q ss_pred cccHHHHH------HHHhcCCCCCcEEEEcCCCCch---------HHHHHHHHHccCCCeeEccccHHHHHhCCCCcc
Q 022972 156 SYNKQFLS------KVEEKLPKDTDLIVACQKGLRS---------LAACELLYNAGYRNLFWVQGGLEAAEEEDLVRE 218 (289)
Q Consensus 156 ~~~~~f~~------~~~~~l~k~~~IVvyC~~G~RS---------~~aa~~L~~~G~~nV~~L~GG~~aw~~~gl~~~ 218 (289)
...++++. ... .. ++++|||||++|.|| ..++..|...|| +|+.|+||+.+|.+.+.++.
T Consensus 63 ~~~~~~~~~~~~~~~~~-~~-~~~~ivvyc~~g~~~~~~~~~~~~~~~~~~L~~~G~-~v~~l~GG~~~w~~~g~~~~ 137 (142)
T 2ouc_A 63 ITVLDLISCREGKDSFK-RI-FSKEIIVYDENTNEPSRVMPSQPLHIVLESLKREGK-EPLVLKGGLSSFKQNHENLC 137 (142)
T ss_dssp SCHHHHHHTTSCTTHHH-HH-HHSCEEEECSSCCCGGGCCTTSHHHHHHHHHHHTTC-CCEEETTHHHHHTTTCGGGE
T ss_pred cchhhhCCChhhhHHHh-cc-CCCcEEEEECCCCchhhcCcccHHHHHHHHHHHcCC-cEEEEccCHHHHHHHCHHhh
Confidence 11122221 000 01 257899999998885 457788999999 89999999999999988775
No 38
>2a2k_A M-phase inducer phosphatase 2; dual specificity, substrate trapping, active site mutant, hydrolase; 1.52A {Homo sapiens} PDB: 2ifv_A 1ymd_A 1ym9_A 1ymk_A 1yml_A 1ys0_A 1cwt_A 2ifd_A
Probab=99.80 E-value=1.4e-19 Score=154.14 Aligned_cols=108 Identities=18% Similarity=0.255 Sum_probs=84.7
Q ss_pred CCcceeCHHHHHHhhcC------CCcEEEEeCChhhhhhccCCCcEeeCCCCCcccccCCCCCccccccccCCccCCCCC
Q 022972 81 GKVKVLTPREAGYAVQL------SSKTLLDVRPSTERKKAWIKGSIWIPIFDIDDTFDAGSLPQKVTNFVMGGWWSGVPT 154 (289)
Q Consensus 81 ~~~~~Is~~el~~~l~~------~~~vlIDVRs~~Ey~~ghIPGAinIP~~~~~~~~~vgtlyk~~~~~~~~a~~~g~~~ 154 (289)
...+.|+++++.++++. ++.+|||||++.||+.||||||+|||+.++.++.
T Consensus 21 ~~~~~is~~el~~~l~~~~~~~~~~~~liDvR~~~ey~~ghIpgAinip~~~l~~~~----------------------- 77 (175)
T 2a2k_A 21 QDLKYISPETMVALLTGKFSNIVDKFVIVDCRYPYEYEGGHIKTAVNLPLERDAESF----------------------- 77 (175)
T ss_dssp TTSCEECHHHHHHHHTTTTTTTEEEEEEEECSCHHHHHTCEETTCEECCSHHHHHHH-----------------------
T ss_pred CCCceeCHHHHHHHHhcccccCCCCEEEEECCCHHHHcCCcCCCcEECChhHHHHHh-----------------------
Confidence 45679999999999875 3789999999999999999999999987543210
Q ss_pred CcccHHHHHHHHhcCC--CCCcEEE--EcC-CCCchHHHHHHHHH----------ccCCCeeEccccHHHHHhCCCCccC
Q 022972 155 LSYNKQFLSKVEEKLP--KDTDLIV--ACQ-KGLRSLAACELLYN----------AGYRNLFWVQGGLEAAEEEDLVREG 219 (289)
Q Consensus 155 ~~~~~~f~~~~~~~l~--k~~~IVv--yC~-~G~RS~~aa~~L~~----------~G~~nV~~L~GG~~aw~~~gl~~~~ 219 (289)
..+ ...++ ++++||| ||+ +|.||..++..|+. +||+||+.|+||+.+|.+++.|...
T Consensus 78 -------~~~-~~~~~~~~~~~ivvv~yC~~~g~rs~~aa~~L~~~~~~~~~l~~~G~~~V~~L~GG~~~W~~~~~~~~~ 149 (175)
T 2a2k_A 78 -------LLK-SPIAPCSLDKRVILIFHSEFSSERGPRMCRFIRERDRAVNDYPSLYYPEMYILKGGYKEFFPQHPNFCE 149 (175)
T ss_dssp -------HHS-SCCCC----CEEEEEEECSSSSSHHHHHHHHHHHHHHHTSSTTCCSCCCEEEETTHHHHHTTTCGGGEE
T ss_pred -------hhh-hhhccccCCCCeEEEEECCCCCCccHHHHHHHHHhhhhhhhhhhcCCceEEEEcCCHHHHHHHCccccC
Confidence 000 00123 6788755 598 99999999999986 4999999999999999999888753
No 39
>1uar_A Rhodanese; sulfurtransferase, riken structural genomics/PROT initiative, RSGI, structural genomics, transferase; 1.70A {Thermus thermophilus} SCOP: c.46.1.2 c.46.1.2
Probab=99.80 E-value=1.9e-19 Score=164.03 Aligned_cols=114 Identities=19% Similarity=0.137 Sum_probs=93.2
Q ss_pred ceeCHHHHHHhhc---CCCcEEEEeCChhhhh----------------hccCCCcEeeCCCCCcccccCCCCCccccccc
Q 022972 84 KVLTPREAGYAVQ---LSSKTLLDVRPSTERK----------------KAWIKGSIWIPIFDIDDTFDAGSLPQKVTNFV 144 (289)
Q Consensus 84 ~~Is~~el~~~l~---~~~~vlIDVRs~~Ey~----------------~ghIPGAinIP~~~~~~~~~vgtlyk~~~~~~ 144 (289)
..|+++++.++++ .++..|||||++.||. .||||||+|||+.++.+..
T Consensus 146 ~~i~~~el~~~l~~~~~~~~~liDvR~~~e~~g~~~~~~~~~~~~~~~~ghIpgA~~ip~~~~~~~~------------- 212 (285)
T 1uar_A 146 IRAYRDDVLEHIIKVKEGKGALVDVRSPQEYRGELTHMPDYPQEGALRAGHIPGAKNIPWAKAVNPD------------- 212 (285)
T ss_dssp GEECHHHHHHHHHHHHTTSEEEEECSCHHHHHTCC--------CCCSCCSBCTTCEECCGGGGBCTT-------------
T ss_pred eEEcHHHHHHHHhhcccCCCcEEEcCCccceeeeccccccccccccccCCcCCCccccCHHHhcCCC-------------
Confidence 4599999999874 2445799999999998 7999999999988764321
Q ss_pred cCCccCCCCCCcccHHHHHHHHhc--CCCCCcEEEEcCCCCchHHHHHHHH-HccCCCeeEccccHHHHH-hCCCCccC
Q 022972 145 MGGWWSGVPTLSYNKQFLSKVEEK--LPKDTDLIVACQKGLRSLAACELLY-NAGYRNLFWVQGGLEAAE-EEDLVREG 219 (289)
Q Consensus 145 ~~a~~~g~~~~~~~~~f~~~~~~~--l~k~~~IVvyC~~G~RS~~aa~~L~-~~G~~nV~~L~GG~~aw~-~~gl~~~~ 219 (289)
+..+.++.+++.... ++++++||+||++|.||..+++.|+ .+||+||++|+||+.+|. +.++|+++
T Consensus 213 ---------~~~~~~~~l~~~~~~~g~~~~~~ivvyC~~G~rs~~a~~~L~~~~G~~~v~~l~GG~~~W~~~~g~pv~~ 282 (285)
T 1uar_A 213 ---------GTFKSAEELRALYEPLGITKDKDIVVYCRIAERSSHSWFVLKYLLGYPHVKNYDGSWTEWGNLVGVPIAK 282 (285)
T ss_dssp ---------SCBCCHHHHHHHHGGGTCCTTSEEEEECSSHHHHHHHHHHHHTTSCCSCEEEESSHHHHHTTSTTCCCBC
T ss_pred ---------CcCCCHHHHHHHHHHcCCCCCCCEEEECCchHHHHHHHHHHHHHcCCCCcceeCchHHHHhcCCCCCccc
Confidence 122344455444445 7899999999999999999999999 999999999999999998 78999874
No 40
>1qb0_A Protein (M-phase inducer phosphatase 2 (CDC25B)); hydrolase, cell cycle phosphatase, dual specificity protein phosphatase; 1.91A {Homo sapiens} SCOP: c.46.1.1 PDB: 1cwr_A 1cws_A 2uzq_A
Probab=99.79 E-value=2.4e-19 Score=158.02 Aligned_cols=108 Identities=19% Similarity=0.280 Sum_probs=88.1
Q ss_pred CCcceeCHHHHHHhhcCC------CcEEEEeCChhhhhhccCCCcEeeCCCCCcccccCCCCCccccccccCCccCCCCC
Q 022972 81 GKVKVLTPREAGYAVQLS------SKTLLDVRPSTERKKAWIKGSIWIPIFDIDDTFDAGSLPQKVTNFVMGGWWSGVPT 154 (289)
Q Consensus 81 ~~~~~Is~~el~~~l~~~------~~vlIDVRs~~Ey~~ghIPGAinIP~~~~~~~~~vgtlyk~~~~~~~~a~~~g~~~ 154 (289)
...+.|+++++.++++.+ +.+|||||++.||+.||||||+|||+.++.++
T Consensus 41 ~~~~~Is~~el~~~l~~~~~~~~~~~~lIDvR~~~Ey~~gHIpGAinip~~~l~~~------------------------ 96 (211)
T 1qb0_A 41 QDLKYISPETMVALLTGKFSNIVDKFVIVDCRYPYEYEGGHIKTAVNLPLERDAES------------------------ 96 (211)
T ss_dssp TTSCEECHHHHHHHHTTTTTTTEEEEEEEECSCHHHHHTCEETTCEECCSHHHHHH------------------------
T ss_pred CCCCeeCHHHHHHHHhcccccCCCCEEEEECCCHHHHccCcCCCCEECCchHHHHH------------------------
Confidence 457899999999988763 78999999999999999999999998654321
Q ss_pred CcccHHHHHHHHhcCC--CCCcE--EEEcC-CCCchHHHHHHHHH----------ccCCCeeEccccHHHHHhCCCCccC
Q 022972 155 LSYNKQFLSKVEEKLP--KDTDL--IVACQ-KGLRSLAACELLYN----------AGYRNLFWVQGGLEAAEEEDLVREG 219 (289)
Q Consensus 155 ~~~~~~f~~~~~~~l~--k~~~I--VvyC~-~G~RS~~aa~~L~~----------~G~~nV~~L~GG~~aw~~~gl~~~~ 219 (289)
++.+. ..++ +++++ |+||+ +|.||..+++.|+. +||+||+.|+||+.+|.+++.|...
T Consensus 97 ------~~~~~-~~l~~~~d~~ivvVvyC~~sG~rs~~aa~~L~~~~~~~~~l~~~G~~~V~~L~GG~~~W~~~g~~~~~ 169 (211)
T 1qb0_A 97 ------FLLKS-PIAPCSLDKRVILIFHCEFSSERGPRMCRFIRERDRAVNDYPSLYYPEMYILKGGYKEFFPQHPNFCE 169 (211)
T ss_dssp ------HHHTT-TCCCSSTTSEEEEEEECSSSSSHHHHHHHHHHHHHHHTSSTTCCSCCCEEEETTHHHHHTTTCGGGEE
T ss_pred ------hhhhh-hhccccCCCCeEEEEECCCCCccHHHHHHHHHhhhhhhhhhhhcCCCeEEEECCHHHHHHHHCccccC
Confidence 00000 1233 67787 78999 99999999999986 6999999999999999999988764
No 41
>3tp9_A Beta-lactamase and rhodanese domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.70A {Alicyclobacillus acidocaldarius subsp}
Probab=99.79 E-value=1.1e-19 Score=177.20 Aligned_cols=103 Identities=26% Similarity=0.340 Sum_probs=93.2
Q ss_pred CCcceeCHHHHHHhhcCCCcEEEEeCChhhhhhccCCCcEeeCCCCCcccccCCCCCccccccccCCccCCCCCCcccHH
Q 022972 81 GKVKVLTPREAGYAVQLSSKTLLDVRPSTERKKAWIKGSIWIPIFDIDDTFDAGSLPQKVTNFVMGGWWSGVPTLSYNKQ 160 (289)
Q Consensus 81 ~~~~~Is~~el~~~l~~~~~vlIDVRs~~Ey~~ghIPGAinIP~~~~~~~~~vgtlyk~~~~~~~~a~~~g~~~~~~~~~ 160 (289)
.....++++++.++++.++.+|||||++.||+.||||||+|+|+.++.++.
T Consensus 371 ~~~~~i~~~~l~~~~~~~~~~lvDvR~~~e~~~ghIpgA~~ip~~~l~~~~----------------------------- 421 (474)
T 3tp9_A 371 ASYANVSPDEVRGALAQQGLWLLDVRNVDEWAGGHLPQAHHIPLSKLAAHI----------------------------- 421 (474)
T ss_dssp ECCEEECHHHHHHTTTTTCCEEEECSCHHHHHHCBCTTCEECCHHHHTTTG-----------------------------
T ss_pred ccccccCHHHHHHHhcCCCcEEEECCCHHHHhcCcCCCCEECCHHHHHHHH-----------------------------
Confidence 345789999999988777899999999999999999999999987765432
Q ss_pred HHHHHHhcCCCCCcEEEEcCCCCchHHHHHHHHHccCCCeeEccccHHHHHhCCCCcc
Q 022972 161 FLSKVEEKLPKDTDLIVACQKGLRSLAACELLYNAGYRNLFWVQGGLEAAEEEDLVRE 218 (289)
Q Consensus 161 f~~~~~~~l~k~~~IVvyC~~G~RS~~aa~~L~~~G~~nV~~L~GG~~aw~~~gl~~~ 218 (289)
..++++++||+||++|.||..++..|+.+||+||+.|+||+.+|.++|+|++
T Consensus 422 ------~~l~~~~~vvv~C~~G~ra~~a~~~L~~~G~~~v~~~~Gg~~~W~~~g~p~~ 473 (474)
T 3tp9_A 422 ------HDVPRDGSVCVYCRTGGRSAIAASLLRAHGVGDVRNMVGGYEAWRGKGFPVE 473 (474)
T ss_dssp ------GGSCSSSCEEEECSSSHHHHHHHHHHHHHTCSSEEEETTHHHHHHHTTCCCB
T ss_pred ------hcCCCCCEEEEECCCCHHHHHHHHHHHHcCCCCEEEecChHHHHHhCCCCCC
Confidence 3578899999999999999999999999999999999999999999999986
No 42
>3aay_A Putative thiosulfate sulfurtransferase; sulfurtranserase, structural genomics, PSI, structure initiative; 1.90A {Mycobacterium tuberculosis} PDB: 3aax_A 3hwi_A
Probab=99.78 E-value=4.8e-19 Score=160.70 Aligned_cols=111 Identities=21% Similarity=0.161 Sum_probs=88.5
Q ss_pred eeCHHHHHHhhcCCCcEEEEeCChhhhhh----------------ccCCCcEeeCCCCCcccccCCCCCccccccccCCc
Q 022972 85 VLTPREAGYAVQLSSKTLLDVRPSTERKK----------------AWIKGSIWIPIFDIDDTFDAGSLPQKVTNFVMGGW 148 (289)
Q Consensus 85 ~Is~~el~~~l~~~~~vlIDVRs~~Ey~~----------------ghIPGAinIP~~~~~~~~~vgtlyk~~~~~~~~a~ 148 (289)
.++++++.++++.++ |||||++.||.. ||||||+|||+.++.+..
T Consensus 145 ~~~~~el~~~~~~~~--liDvR~~~e~~~~~~~~~~~~~~~~~~~ghIpgA~~ip~~~~~~~~----------------- 205 (277)
T 3aay_A 145 RAFRDEVLAAINVKN--LIDVRSPDEFSGKILAPAHLPQEQSQRPGHIPGAINVPWSRAANED----------------- 205 (277)
T ss_dssp EECHHHHHHTTTTSE--EEECSCHHHHHTSCCC-----CCCCSCCSBCTTCEECCGGGGBCTT-----------------
T ss_pred hcCHHHHHHhcCCCC--EEEeCChHHeeeeecccccccccccccCCcCCCceecCHHHhcCCC-----------------
Confidence 378999998886555 999999999986 999999999987543211
Q ss_pred cCCCCCCcccHHHH-HHHHh-cCCCCCcEEEEcCCCCchHHHHHHHHH-ccCCCeeEccccHHHHHh-CCCCccC
Q 022972 149 WSGVPTLSYNKQFL-SKVEE-KLPKDTDLIVACQKGLRSLAACELLYN-AGYRNLFWVQGGLEAAEE-EDLVREG 219 (289)
Q Consensus 149 ~~g~~~~~~~~~f~-~~~~~-~l~k~~~IVvyC~~G~RS~~aa~~L~~-~G~~nV~~L~GG~~aw~~-~gl~~~~ 219 (289)
+..+.++.+ +.+.+ .++++++||+||++|.||..++..|+. +||+||++|+||+.+|.+ .++|+++
T Consensus 206 -----~~~~~~~~l~~~~~~~~~~~~~~iv~yC~~G~rs~~a~~~L~~~~G~~~v~~l~GG~~~W~~~~g~pv~~ 275 (277)
T 3aay_A 206 -----GTFKSDEELAKLYADAGLDNSKETIAYCRIGERSSHTWFVLRELLGHQNVKNYDGSWTEYGSLVGAPIEL 275 (277)
T ss_dssp -----SCBCCHHHHHHHHHHHTCCTTSCEEEECSSHHHHHHHHHHHHTTSCCSCEEEESSHHHHHTTSTTCCCBC
T ss_pred -----CcCCCHHHHHHHHHHcCCCCCCCEEEEcCcHHHHHHHHHHHHHHcCCCcceeeCchHHHHhcCCCCCCcc
Confidence 112233333 33332 378899999999999999999999995 999999999999999998 8999863
No 43
>3hzu_A Thiosulfate sulfurtransferase SSEA; niaid, ssgcid, infectious disease, transferase structural genomics; 2.10A {Mycobacterium tuberculosis} PDB: 3p3a_A
Probab=99.78 E-value=5.3e-19 Score=164.71 Aligned_cols=112 Identities=17% Similarity=0.132 Sum_probs=91.9
Q ss_pred ceeCHHHHHHhhcCCCcEEEEeCChhhhhh----------------ccCCCcEeeCCCCCcccccCCCCCccccccccCC
Q 022972 84 KVLTPREAGYAVQLSSKTLLDVRPSTERKK----------------AWIKGSIWIPIFDIDDTFDAGSLPQKVTNFVMGG 147 (289)
Q Consensus 84 ~~Is~~el~~~l~~~~~vlIDVRs~~Ey~~----------------ghIPGAinIP~~~~~~~~~vgtlyk~~~~~~~~a 147 (289)
..++++|+.+++++. +|||||++.||.. ||||||+|||+.++.+..
T Consensus 179 ~~i~~~el~~~l~~~--~liDvR~~~e~~~~~~~~~~~~~~~~~~~GhIpGA~niP~~~~~~~~---------------- 240 (318)
T 3hzu_A 179 IRAFRDDVLAILGAQ--PLIDVRSPEEYTGKRTHMPDYPEEGALRAGHIPTAVHIPWGKAADES---------------- 240 (318)
T ss_dssp TBCCHHHHHHHTTTS--CEEECSCHHHHHTSCSSCTTSCSCSCSSCSBCTTCEECCGGGGBCTT----------------
T ss_pred ccccHHHHHHhhcCC--eEEecCCHHHhcccccCccccccccCCcCcCCCCeeecCHHHhcCCC----------------
Confidence 357899999987653 9999999999998 999999999997654311
Q ss_pred ccCCCCCCcccHHHHHHHHhcCCCCCcEEEEcCCCCchHHHHHHHHH-ccCCCeeEccccHHHHHh-CCCCccC
Q 022972 148 WWSGVPTLSYNKQFLSKVEEKLPKDTDLIVACQKGLRSLAACELLYN-AGYRNLFWVQGGLEAAEE-EDLVREG 219 (289)
Q Consensus 148 ~~~g~~~~~~~~~f~~~~~~~l~k~~~IVvyC~~G~RS~~aa~~L~~-~G~~nV~~L~GG~~aw~~-~gl~~~~ 219 (289)
+..+.++.+++....++++++||+||++|.||..++..|++ +||+||+.|+||+.+|.+ .++|+++
T Consensus 241 ------g~~~~~~~l~~~~~~l~~~~~ivvyC~sG~rs~~a~~~L~~~~G~~~v~~~~GG~~~W~~~~g~Pv~~ 308 (318)
T 3hzu_A 241 ------GRFRSREELERLYDFINPDDQTVVYCRIGERSSHTWFVLTHLLGKADVRNYDGSWTEWGNAVRVPIVA 308 (318)
T ss_dssp ------SCBCCHHHHHHHTTTCCTTCCCEEECSSSHHHHHHHHHHHHTSCCSSCEECTTHHHHHTTSTTCCCBC
T ss_pred ------CcCCCHHHHHHHhcCCCCCCcEEEEcCChHHHHHHHHHHHHHcCCCCeeEeCCcHHHHhcCCCCCccc
Confidence 11233344444445688999999999999999999999997 999999999999999995 6999885
No 44
>3op3_A M-phase inducer phosphatase 3; structural genomics, structural genomics consortium, SGC, Al alpha sandwich, kinase, cytosol, hydrolase; 2.63A {Homo sapiens}
Probab=99.78 E-value=3.6e-19 Score=157.99 Aligned_cols=107 Identities=18% Similarity=0.224 Sum_probs=81.3
Q ss_pred CCcceeCHHHHHHhhcCC------CcEEEEeCChhhhhhccCCCcEeeCCCC-CcccccCCCCCccccccccCCccCCCC
Q 022972 81 GKVKVLTPREAGYAVQLS------SKTLLDVRPSTERKKAWIKGSIWIPIFD-IDDTFDAGSLPQKVTNFVMGGWWSGVP 153 (289)
Q Consensus 81 ~~~~~Is~~el~~~l~~~------~~vlIDVRs~~Ey~~ghIPGAinIP~~~-~~~~~~vgtlyk~~~~~~~~a~~~g~~ 153 (289)
..++.|+++++.++++.+ +.+|||||++.||+.||||||+|||..+ +.+...
T Consensus 54 ~~~~~Is~~eL~~~l~~~~~~~~~~~~lIDVR~~~Ey~~GHIpGAinIP~~~~l~~~l~--------------------- 112 (216)
T 3op3_A 54 QDLKYVNPETVAALLSGKFQGLIEKFYVIDCRYPYEYLGGHIQGALNLYSQEELFNFFL--------------------- 112 (216)
T ss_dssp SSSEEECHHHHHHHHTTTTTTTEEEEEEEECSCHHHHHTSEETTCEECCSHHHHHHHHT---------------------
T ss_pred CCCCEeCHHHHHHHHhCCCccccCCEEEEEeCcHHHHhcCCccCCEECChHHHHHHHHh---------------------
Confidence 457899999999999765 6899999999999999999999999864 111100
Q ss_pred CCcccHHHHHHHHhcCCCCC--cEEEEcC-CCCchHHHHHHHHHc----------cCCCeeEccccHHHHHhCCCCc
Q 022972 154 TLSYNKQFLSKVEEKLPKDT--DLIVACQ-KGLRSLAACELLYNA----------GYRNLFWVQGGLEAAEEEDLVR 217 (289)
Q Consensus 154 ~~~~~~~f~~~~~~~l~k~~--~IVvyC~-~G~RS~~aa~~L~~~----------G~~nV~~L~GG~~aw~~~gl~~ 217 (289)
+.-....++++ +||+||+ +|.||..++..|+.. ||++|++|+||+.+|.++.-+.
T Consensus 113 ---------~~~~~~~~~~k~~~VVvyC~~SG~Rs~~aa~~L~~~~~~~~~y~~lGf~~V~~L~GG~~aW~~~~~~l 180 (216)
T 3op3_A 113 ---------KKPIVPLDTQKRIIIVFHCEFSSERGPRMCRCLREEDRSLNQYPALYYPELYILKGGYRDFFPEYMEL 180 (216)
T ss_dssp ---------SSCCCCSSTTSEEEEEEECCC--CCHHHHHHHHHHHHHHTSSTTCCSCCCEEEETTHHHHHTTTCGGG
T ss_pred ---------hccccccccCCCCEEEEEeCCCChHHHHHHHHHHHcCcccccccccCCCcEEEECCcHHHHHHhCccc
Confidence 00000122344 4999999 999999999999987 8999999999999998864433
No 45
>1okg_A Possible 3-mercaptopyruvate sulfurtransferase; rhodanese, prolyl isomerase, catalytic triad, serine protease, leishmania pyruvate; HET: CSR; 2.10A {Leishmania major} SCOP: c.46.1.2 c.46.1.2 d.26.1.3
Probab=99.77 E-value=1.3e-18 Score=165.67 Aligned_cols=119 Identities=16% Similarity=0.158 Sum_probs=94.2
Q ss_pred cceeCHHHHHHhhcCCCcEEEEeCC--------hhhhhhccCCCcEeeCCCC-CcccccCCCCCccccccccCCccCCCC
Q 022972 83 VKVLTPREAGYAVQLSSKTLLDVRP--------STERKKAWIKGSIWIPIFD-IDDTFDAGSLPQKVTNFVMGGWWSGVP 153 (289)
Q Consensus 83 ~~~Is~~el~~~l~~~~~vlIDVRs--------~~Ey~~ghIPGAinIP~~~-~~~~~~vgtlyk~~~~~~~~a~~~g~~ 153 (289)
...|+++++.++++. .+|||||+ +.||+.||||||+|+|+.. +.+... ..+.+
T Consensus 13 ~~~Is~~el~~~l~~--~~iIDvR~~~~~~~~~~~ey~~gHIpGAi~ip~~~~l~~~~~----------------~~~~~ 74 (373)
T 1okg_A 13 KVFLDPSEVADHLAE--YRIVDCRYSLKIKDHGSIQYAKEHVKSAIRADVDTNLSKLVP----------------TSTAR 74 (373)
T ss_dssp CCEECHHHHTTCGGG--SEEEECCCCSSSTTTTTTHHHHCEETTCEECCTTTTSCCCCT----------------TCCCS
T ss_pred CcEEcHHHHHHHcCC--cEEEEecCCccccccchhHHhhCcCCCCEEeCchhhhhcccc----------------cCCcc
Confidence 578999999987754 89999998 6999999999999999985 543210 01233
Q ss_pred CCcccH-HHHHHHHh-cCCCCCcEEEEc-CCCCchH-HHHHHHHHccCCCeeEccccHHHHHhCCCCccCC
Q 022972 154 TLSYNK-QFLSKVEE-KLPKDTDLIVAC-QKGLRSL-AACELLYNAGYRNLFWVQGGLEAAEEEDLVREGP 220 (289)
Q Consensus 154 ~~~~~~-~f~~~~~~-~l~k~~~IVvyC-~~G~RS~-~aa~~L~~~G~~nV~~L~GG~~aw~~~gl~~~~~ 220 (289)
++.+.+ +|.+.+.+ .++++++||||| ++|.||. .+++.|+.+|| ||++|+||+.+|+++|+|++..
T Consensus 75 ~~lp~~~~f~~~l~~~gi~~d~~VVvYc~~~G~rsa~ra~~~L~~~G~-~V~~L~GG~~aW~~~g~pv~~~ 144 (373)
T 1okg_A 75 HPLPPXAEFIDWCMANGMAGELPVLCYDDECGAMGGCRLWWMLNSLGA-DAYVINGGFQACKAAGLEMESG 144 (373)
T ss_dssp SCCCCHHHHHHHHHHTTCSSSSCEEEECSSTTTTTHHHHHHHHHHHTC-CEEEETTTTHHHHTTTCCEECS
T ss_pred ccCCCHHHHHHHHHHcCCCCCCeEEEEeCCCCchHHHHHHHHHHHcCC-eEEEeCCCHHHHHhhcCCcccC
Confidence 444444 44444432 368899999999 7888986 99999999999 9999999999999999998753
No 46
>2eg4_A Probable thiosulfate sulfurtransferase; structural genomics, NPPSFA, national Pro protein structural and functional analyses; 1.70A {Thermus thermophilus} PDB: 2eg3_A
Probab=99.76 E-value=8.7e-19 Score=155.33 Aligned_cols=100 Identities=28% Similarity=0.237 Sum_probs=84.5
Q ss_pred cceeCHHHHHHhhcCCCcEEEEeCChhhhhh----------ccCCCcEeeCCCCCcccccCCCCCccccccccCCccCCC
Q 022972 83 VKVLTPREAGYAVQLSSKTLLDVRPSTERKK----------AWIKGSIWIPIFDIDDTFDAGSLPQKVTNFVMGGWWSGV 152 (289)
Q Consensus 83 ~~~Is~~el~~~l~~~~~vlIDVRs~~Ey~~----------ghIPGAinIP~~~~~~~~~vgtlyk~~~~~~~~a~~~g~ 152 (289)
...++++|+.+ +.+|||||++.||.. ||||||+|+|+.++.++.
T Consensus 120 ~~~i~~~e~~~-----~~~liDvR~~~e~~~~~~~~~~~~~ghIpgA~~ip~~~~~~~~--------------------- 173 (230)
T 2eg4_A 120 DWLLTADEAAR-----HPLLLDVRSPEEFQGKVHPPCCPRGGRIPGSKNAPLELFLSPE--------------------- 173 (230)
T ss_dssp GGBCCHHHHHT-----CSCEEECSCHHHHTTSCCCTTSSSCCBCTTCEECCGGGGGCCT---------------------
T ss_pred cceeCHHHHhh-----CCeEEeCCCHHHcCcccCCCCCccCCCCCCcEEcCHHHhCChH---------------------
Confidence 34688888874 679999999999999 999999999988764321
Q ss_pred CCCcccHHHHHHHHhcCCCCCcEEEEcCCCCchHHHHHHHHHccCCCeeEccccHHHHHhCCCCcc
Q 022972 153 PTLSYNKQFLSKVEEKLPKDTDLIVACQKGLRSLAACELLYNAGYRNLFWVQGGLEAAEEEDLVRE 218 (289)
Q Consensus 153 ~~~~~~~~f~~~~~~~l~k~~~IVvyC~~G~RS~~aa~~L~~~G~~nV~~L~GG~~aw~~~gl~~~ 218 (289)
+.+++ ..++++++||+||++|.||..++..|+.+| .||+.|+||+.+|.+.++|++
T Consensus 174 -------e~~~~--~~~~~~~~iv~~C~~G~rs~~a~~~L~~~G-~~v~~~~Gg~~~W~~~g~p~~ 229 (230)
T 2eg4_A 174 -------GLLER--LGLQPGQEVGVYCHSGARSAVAFFVLRSLG-VRARNYLGSMHEWLQEGLPTE 229 (230)
T ss_dssp -------THHHH--HTCCTTCEEEEECSSSHHHHHHHHHHHHTT-CEEEECSSHHHHHHHTTCCCB
T ss_pred -------HHHHh--cCCCCCCCEEEEcCChHHHHHHHHHHHHcC-CCcEEecCcHHHHhhcCCCCC
Confidence 11111 147889999999999999999999999999 899999999999999999875
No 47
>1hzm_A Dual specificity protein phosphatase 6; hydrolase; NMR {Homo sapiens} SCOP: c.46.1.1
Probab=99.76 E-value=4.6e-19 Score=147.37 Aligned_cols=116 Identities=18% Similarity=0.153 Sum_probs=82.7
Q ss_pred CcceeCHHHHHHhhcCC--CcEEEEeCChhhhhhccCCCcEeeCCCCCccc-ccCCCCCccccccccCCccCCCCCCccc
Q 022972 82 KVKVLTPREAGYAVQLS--SKTLLDVRPSTERKKAWIKGSIWIPIFDIDDT-FDAGSLPQKVTNFVMGGWWSGVPTLSYN 158 (289)
Q Consensus 82 ~~~~Is~~el~~~l~~~--~~vlIDVRs~~Ey~~ghIPGAinIP~~~~~~~-~~vgtlyk~~~~~~~~a~~~g~~~~~~~ 158 (289)
....|+++++.++++.+ +.+|||||++.||+.||||||+|||+..+..+ ..-+ -.......+.
T Consensus 14 ~~~~is~~~l~~~l~~~~~~~~liDvR~~~ey~~gHIpgAinip~~~~~~~~~~~~--------------~~~~~~~l~~ 79 (154)
T 1hzm_A 14 MAISKTVAWLNEQLELGNERLLLMDCRPQELYESSHIESAINVAIPGIMLRRLQKG--------------NLPVRALFTR 79 (154)
T ss_dssp CSSBSCCCCHHHHHHHCSSSCEEECCSTTHHHHHHTSSSCCCCCCSSHHHHTBCCS--------------CCCTTTTSTT
T ss_pred cccccCHHHHHHHHhCCCCCEEEEEcCCHHHHhhccccCceEeCccHHHHhhhhcC--------------cccHHHhCCC
Confidence 46789999999888755 78999999999999999999999998764310 0000 0001111222
Q ss_pred HHHHHHHHhcCCCCCcEEEEcCCCCch-------HHHHHHHHHc---cCCCeeEccccHHHHHhC
Q 022972 159 KQFLSKVEEKLPKDTDLIVACQKGLRS-------LAACELLYNA---GYRNLFWVQGGLEAAEEE 213 (289)
Q Consensus 159 ~~f~~~~~~~l~k~~~IVvyC~~G~RS-------~~aa~~L~~~---G~~nV~~L~GG~~aw~~~ 213 (289)
++..+.+. .++++++|||||++|.++ ..+++.|+.+ ||+ |+.|+||+.+|.+.
T Consensus 80 ~~~~~~~~-~~~~~~~iVvyc~~g~~~~~~~~aa~~~~~~l~~l~~~G~~-v~~L~GG~~~W~~~ 142 (154)
T 1hzm_A 80 GEDRDRFT-RRCGTDTVVLYDESSSDWNENTGGESLLGLLLKKLKDEGCR-AFYLEGGFSKFQAE 142 (154)
T ss_dssp SHHHHHHH-HSTTSSCEEECCCSSSSSCSCSSCCSHHHHHHHHHHHTTCC-CEECCCCHHHHHHH
T ss_pred HHHHHHHh-ccCCCCeEEEEeCCCCccccccccchHHHHHHHHHHHCCCc-eEEEcChHHHHHHH
Confidence 22223332 467888999999988875 4456777765 998 99999999999874
No 48
>1yt8_A Thiosulfate sulfurtransferase; rhodanase domains, cyanide detoxification, structural genomics, PSI, protein structure initiative; 1.90A {Pseudomonas aeruginosa} SCOP: c.46.1.2 c.46.1.2 c.46.1.2 c.46.1.2
Probab=99.76 E-value=8.9e-19 Score=173.85 Aligned_cols=105 Identities=19% Similarity=0.172 Sum_probs=90.1
Q ss_pred CcceeCHHHHHHhhcC-CCcEEEEeCChhhhhhccCCCcEeeCCCCCcccccCCCCCccccccccCCccCCCCCCcccHH
Q 022972 82 KVKVLTPREAGYAVQL-SSKTLLDVRPSTERKKAWIKGSIWIPIFDIDDTFDAGSLPQKVTNFVMGGWWSGVPTLSYNKQ 160 (289)
Q Consensus 82 ~~~~Is~~el~~~l~~-~~~vlIDVRs~~Ey~~ghIPGAinIP~~~~~~~~~vgtlyk~~~~~~~~a~~~g~~~~~~~~~ 160 (289)
.++.|+++++.++++. ++.+|||||++.||+.||||||+|||+.++...
T Consensus 5 ~~~~is~~~l~~~l~~~~~~~liDvR~~~e~~~ghIpgAv~ip~~~~~~~------------------------------ 54 (539)
T 1yt8_A 5 QIAVRTFHDIRAALLARRELALLDVREEDPFAQAHPLFAANLPLSRLELE------------------------------ 54 (539)
T ss_dssp -CEEECHHHHHHHHHHTCCBEEEECSCHHHHTTSBCTTCEECCGGGHHHH------------------------------
T ss_pred cCcccCHHHHHHHHhCCCCeEEEECCCHHHHhcCcCCCCEECCHHHHHHH------------------------------
Confidence 4678999999998864 479999999999999999999999998654321
Q ss_pred HHHHHHhcC-CCCCcEEEEcCCCCchHHHHHHHHHccCCCeeEccccHHHHHhCCCCccCC
Q 022972 161 FLSKVEEKL-PKDTDLIVACQKGLRSLAACELLYNAGYRNLFWVQGGLEAAEEEDLVREGP 220 (289)
Q Consensus 161 f~~~~~~~l-~k~~~IVvyC~~G~RS~~aa~~L~~~G~~nV~~L~GG~~aw~~~gl~~~~~ 220 (289)
+.... +++++|||||++|.+|..+++.|+.+||+||+.|+||+.+|+++|+|+++.
T Consensus 55 ----~~~l~~~~~~~iVvyc~~g~~s~~a~~~L~~~G~~~V~~L~GG~~~W~~~g~p~~~~ 111 (539)
T 1yt8_A 55 ----IHARVPRRDTPITVYDDGEGLAPVAAQRLHDLGYSDVALLDGGLSGWRNAGGELFRD 111 (539)
T ss_dssp ----HHHHSCCTTSCEEEECSSSSHHHHHHHHHHHTTCSSEEEETTHHHHHHHTTCCCBCS
T ss_pred ----HHhhCCCCCCeEEEEECCCChHHHHHHHHHHcCCCceEEeCCCHHHHHhcCCCcccC
Confidence 11222 478899999999999999999999999999999999999999999998753
No 49
>3f4a_A Uncharacterized protein YGR203W; protein phosphatase, rhodanese-like family, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.80A {Saccharomyces cerevisiae} PDB: 3fs5_A*
Probab=99.76 E-value=1.6e-19 Score=154.28 Aligned_cols=113 Identities=22% Similarity=0.232 Sum_probs=84.1
Q ss_pred CCcceeCHHHHHHhhcCC-------CcEEEEeCChhhhhhccCCCcEeeCCCCCcccccCCCCCccccccccCCccCCCC
Q 022972 81 GKVKVLTPREAGYAVQLS-------SKTLLDVRPSTERKKAWIKGSIWIPIFDIDDTFDAGSLPQKVTNFVMGGWWSGVP 153 (289)
Q Consensus 81 ~~~~~Is~~el~~~l~~~-------~~vlIDVRs~~Ey~~ghIPGAinIP~~~~~~~~~vgtlyk~~~~~~~~a~~~g~~ 153 (289)
..++.|+++|+.++++.+ +.+|||||+ .||..||||||+|||+.++.++.
T Consensus 28 ~~~~~Is~~eL~~~l~~~~~~~~~~~~~iIDVR~-~Ey~~GHIpGAiniP~~~l~~~~---------------------- 84 (169)
T 3f4a_A 28 TNVKYLDPTELHRWMQEGHTTTLREPFQVVDVRG-SDYMGGHIKDGWHYAYSRLKQDP---------------------- 84 (169)
T ss_dssp CSEEEECHHHHHHHHHHTSCTTTCCCEEEEECCS-TTCTTCEETTCEECCHHHHHHCH----------------------
T ss_pred CCCcEeCHHHHHHHHhcCCccCcCCCEEEEECCc-hHHccCcCCCCEECCHHHhhccc----------------------
Confidence 568899999999998643 489999999 99999999999999987654320
Q ss_pred CCcccHHHHHHHHhc-C--CCCCcEEEEcCCC-CchHHHHHHHHH----cc--CCCeeEccccHHHHHhCCCCcc
Q 022972 154 TLSYNKQFLSKVEEK-L--PKDTDLIVACQKG-LRSLAACELLYN----AG--YRNLFWVQGGLEAAEEEDLVRE 218 (289)
Q Consensus 154 ~~~~~~~f~~~~~~~-l--~k~~~IVvyC~~G-~RS~~aa~~L~~----~G--~~nV~~L~GG~~aw~~~gl~~~ 218 (289)
...+++.+++... + .++++|||||++| .||..++..|.+ .| +.+|+.|+||+.+|++++.|.+
T Consensus 85 --~~l~~l~~~~~~~~~~~~~~~~IVvyC~sG~~Rs~~aa~~l~~~L~~~G~~~~~V~~L~GG~~aW~~~~~~~~ 157 (169)
T 3f4a_A 85 --EYLRELKHRLLEKQADGRGALNVIFHCMLSQQRGPSAAMLLLRSLDTAELSRCRLWVLRGGFSRWQSVYGDDE 157 (169)
T ss_dssp --HHHHHHHHHHHHHHHTSSSCEEEEEECSSSSSHHHHHHHHHHHTCCHHHHTTEEEEEETTHHHHHHHHHTTCT
T ss_pred --ccHHHHHHHHHhhcccccCCCeEEEEeCCCCCcHHHHHHHHHHHHHHcCCCCCCEEEECCCHHHHHHHcCCcc
Confidence 0112232222211 1 1246899999876 899988877654 36 5789999999999999877654
No 50
>1yt8_A Thiosulfate sulfurtransferase; rhodanase domains, cyanide detoxification, structural genomics, PSI, protein structure initiative; 1.90A {Pseudomonas aeruginosa} SCOP: c.46.1.2 c.46.1.2 c.46.1.2 c.46.1.2
Probab=99.75 E-value=1.4e-18 Score=172.40 Aligned_cols=104 Identities=18% Similarity=0.290 Sum_probs=92.9
Q ss_pred CCcceeCHHHHHHhhcCCCcEEEEeCChhhhhhccCCCcEeeCCCCCcccccCCCCCccccccccCCccCCCCCCcccHH
Q 022972 81 GKVKVLTPREAGYAVQLSSKTLLDVRPSTERKKAWIKGSIWIPIFDIDDTFDAGSLPQKVTNFVMGGWWSGVPTLSYNKQ 160 (289)
Q Consensus 81 ~~~~~Is~~el~~~l~~~~~vlIDVRs~~Ey~~ghIPGAinIP~~~~~~~~~vgtlyk~~~~~~~~a~~~g~~~~~~~~~ 160 (289)
.....++++++.++++.++.+|||||++.||..||||||+|+|..++.+.
T Consensus 374 ~~~~~i~~~~l~~~l~~~~~~liDvR~~~e~~~ghIpgA~~ip~~~l~~~------------------------------ 423 (539)
T 1yt8_A 374 PRADTIDPTTLADWLGEPGTRVLDFTASANYAKRHIPGAAWVLRSQLKQA------------------------------ 423 (539)
T ss_dssp CCCCEECHHHHHHHTTSTTEEEEECSCHHHHHHCBCTTCEECCGGGHHHH------------------------------
T ss_pred CcCCccCHHHHHHHhcCCCeEEEEeCCHHHhhcCcCCCchhCCHHHHHHH------------------------------
Confidence 45679999999999887789999999999999999999999997654322
Q ss_pred HHHHHHhcCCCCCcEEEEcCCCCchHHHHHHHHHccCCCeeEccccHHHHHhCCCCccC
Q 022972 161 FLSKVEEKLPKDTDLIVACQKGLRSLAACELLYNAGYRNLFWVQGGLEAAEEEDLVREG 219 (289)
Q Consensus 161 f~~~~~~~l~k~~~IVvyC~~G~RS~~aa~~L~~~G~~nV~~L~GG~~aw~~~gl~~~~ 219 (289)
+ ..++++++||+||++|.||..++..|+.+||++|+.|+||+.+|.+.|+|+++
T Consensus 424 ----l-~~l~~~~~ivv~C~sG~rs~~aa~~L~~~G~~~v~~l~GG~~~W~~~g~pv~~ 477 (539)
T 1yt8_A 424 ----L-ERLGTAERYVLTCGSSLLARFAVAEVQALSGKPVFLLDGGTSAWVAAGLPTED 477 (539)
T ss_dssp ----H-HHHCCCSEEEEECSSSHHHHHHHHHHHHHHCSCEEEETTHHHHHHHTTCCCBC
T ss_pred ----H-HhCCCCCeEEEEeCCChHHHHHHHHHHHcCCCCEEEeCCcHHHHHhCCCCccc
Confidence 1 24588899999999999999999999999999999999999999999999885
No 51
>2wlr_A Putative thiosulfate sulfurtransferase YNJE; rhodanese domains; HET: EPE; 1.45A {Escherichia coli} PDB: 2wlx_A* 3ipo_A* 3ipp_A
Probab=99.74 E-value=6.8e-18 Score=162.67 Aligned_cols=121 Identities=13% Similarity=0.117 Sum_probs=92.9
Q ss_pred ceeCHHHHHHhhcCCCcEEEEeCChhhh-----------hhccCCCcEeeCCCCCcccccCCCCCccccccccCCccCCC
Q 022972 84 KVLTPREAGYAVQLSSKTLLDVRPSTER-----------KKAWIKGSIWIPIFDIDDTFDAGSLPQKVTNFVMGGWWSGV 152 (289)
Q Consensus 84 ~~Is~~el~~~l~~~~~vlIDVRs~~Ey-----------~~ghIPGAinIP~~~~~~~~~vgtlyk~~~~~~~~a~~~g~ 152 (289)
..|+++++.++++.++.+|||||++.|| ..||||||+|+|+....-.. .. +...
T Consensus 272 ~~i~~~e~~~~l~~~~~~liDvR~~~e~~G~~~~~~~~~~~GhIpgAi~ip~~~~~~~~--~~-------------~~~~ 336 (423)
T 2wlr_A 272 LMLDMEQARGLLHRQDASLVSIRSWPEFIGTTSGYSYIKPKGEIAGARWGHAGSDSTHM--ED-------------FHNP 336 (423)
T ss_dssp GEECHHHHHTTTTCSSEEEEECSCHHHHHTSCCSSTTCCCCSEETTCEECCCCSSTTCC--GG-------------GBCT
T ss_pred heecHHHHHHHhcCCCceEEecCchhheeeeccCCCCCCcCCCCCCccccccccccccH--HH-------------HcCC
Confidence 4589999999887778899999999999 89999999999986321100 00 0001
Q ss_pred CCCcccHHHHHHHH--hcCCCCCcEEEEcCCCCchHHHHHHHHHccCCCeeEccccHHHHHh-CCCCccC
Q 022972 153 PTLSYNKQFLSKVE--EKLPKDTDLIVACQKGLRSLAACELLYNAGYRNLFWVQGGLEAAEE-EDLVREG 219 (289)
Q Consensus 153 ~~~~~~~~f~~~~~--~~l~k~~~IVvyC~~G~RS~~aa~~L~~~G~~nV~~L~GG~~aw~~-~gl~~~~ 219 (289)
.+..+.++.+.+.. ..++++++||+||++|.||..++..|+.+||+||+.|+||+.+|.+ .++|+++
T Consensus 337 ~~~~~~~~~l~~~~~~~~~~~~~~ivvyC~sG~rs~~aa~~L~~~G~~~v~~~~GG~~~W~~~~~~Pv~~ 406 (423)
T 2wlr_A 337 DGTMRSADDITAMWKAWNIKPEQQVSFYCGTGWRASETFMYARAMGWKNVSVYDGGWYEWSSDPKNPVAT 406 (423)
T ss_dssp TSSBCCHHHHHHHHHTTTCCTTSEEEEECSSSHHHHHHHHHHHHTTCSSEEEESSHHHHHTTSTTSCEEC
T ss_pred CCcCCCHHHHHHHHHHcCCCCCCcEEEECCcHHHHHHHHHHHHHcCCCCcceeCccHHHHhcCCCCCccc
Confidence 11122333333333 2478899999999999999999999999999999999999999998 7999874
No 52
>3ntd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; COA, persulfide reductase, rhodanese; HET: COA FAD; 1.99A {Shewanella loihica} PDB: 3nta_A* 3nt6_A*
Probab=99.74 E-value=1.6e-18 Score=171.06 Aligned_cols=97 Identities=28% Similarity=0.422 Sum_probs=87.3
Q ss_pred CCCcceeCHHHHHHhhcCCCcEEEEeCChhhhhhccCCCcEeeCCCCCcccccCCCCCccccccccCCccCCCCCCcccH
Q 022972 80 DGKVKVLTPREAGYAVQLSSKTLLDVRPSTERKKAWIKGSIWIPIFDIDDTFDAGSLPQKVTNFVMGGWWSGVPTLSYNK 159 (289)
Q Consensus 80 ~~~~~~Is~~el~~~l~~~~~vlIDVRs~~Ey~~ghIPGAinIP~~~~~~~~~vgtlyk~~~~~~~~a~~~g~~~~~~~~ 159 (289)
...++.|+++|+.++ .++.+|||||++.||+.+|||||+|||+.++.++.
T Consensus 469 ~~~~~~i~~~~~~~~--~~~~~~iDvR~~~e~~~~~i~ga~~ip~~~l~~~~---------------------------- 518 (565)
T 3ntd_A 469 KGDATPIHFDQIDNL--SEDQLLLDVRNPGELQNGGLEGAVNIPVDELRDRM---------------------------- 518 (565)
T ss_dssp HTSCCEECTTTTTSC--CTTEEEEECSCGGGGGGCCCTTCEECCGGGTTTSG----------------------------
T ss_pred ccccceeeHHHHHhC--CCCcEEEEeCCHHHHhcCCCCCcEECCHHHHHHHH----------------------------
Confidence 367889999999876 56889999999999999999999999998776543
Q ss_pred HHHHHHHhcCCCCCcEEEEcCCCCchHHHHHHHHHccCCCeeEccccHHHHHhCC
Q 022972 160 QFLSKVEEKLPKDTDLIVACQKGLRSLAACELLYNAGYRNLFWVQGGLEAAEEED 214 (289)
Q Consensus 160 ~f~~~~~~~l~k~~~IVvyC~~G~RS~~aa~~L~~~G~~nV~~L~GG~~aw~~~g 214 (289)
..++++++||+||++|.||..+++.|+..|| ||+.|+||+.+|+++|
T Consensus 519 -------~~~~~~~~iv~~c~~g~rs~~a~~~l~~~G~-~v~~l~gG~~~w~~~g 565 (565)
T 3ntd_A 519 -------HELPKDKEIIIFSQVGLRGNVAYRQLVNNGY-RARNLIGGYRTYKFAS 565 (565)
T ss_dssp -------GGSCTTSEEEEECSSSHHHHHHHHHHHHTTC-CEEEETTHHHHHHHTC
T ss_pred -------hhcCCcCeEEEEeCCchHHHHHHHHHHHcCC-CEEEEcChHHHHHhCc
Confidence 3578899999999999999999999999999 8999999999999864
No 53
>3tg1_B Dual specificity protein phosphatase 10; kinase/rhodanese-like domain, docking interaction, transfera hydrolase complex; 2.71A {Homo sapiens}
Probab=99.74 E-value=5.6e-18 Score=142.35 Aligned_cols=116 Identities=19% Similarity=0.256 Sum_probs=78.8
Q ss_pred CCcceeCHHHHHHhhc--------CCCcEEEEeCChhhhhhccCCCcEeeCCCCCc--ccccCCCCCccccccccCCccC
Q 022972 81 GKVKVLTPREAGYAVQ--------LSSKTLLDVRPSTERKKAWIKGSIWIPIFDID--DTFDAGSLPQKVTNFVMGGWWS 150 (289)
Q Consensus 81 ~~~~~Is~~el~~~l~--------~~~~vlIDVRs~~Ey~~ghIPGAinIP~~~~~--~~~~vgtlyk~~~~~~~~a~~~ 150 (289)
..++.|+++|+.++++ .++.+|||||++.||+.||||||+|+|+.++. .+..-+.+.... ......
T Consensus 8 ~~~~~is~~el~~~l~~~~~~~~~~~~~~liDvR~~~e~~~ghI~ga~~i~~~~l~~~~~~~~~~~~~~~----~~~~~~ 83 (158)
T 3tg1_B 8 ASIKIIYPNDLAKKMTKCSKSHLPSQGPVIIDCRPFMEYNKSHIQGAVHINCADKISRRRLQQGKITVLD----LISCRE 83 (158)
T ss_dssp ---CEECHHHHHHHHCC----------CEEEECSCHHHHHHCCBTTCEECCCSSHHHHHHHTTSSCCHHH----HTCCCC
T ss_pred CCCcEecHHHHHHHHHhcccccCCCCCEEEEEcCCHHHHHhCCCCCceeechhHHHHHhhhhcCcccHHh----hcCCHH
Confidence 5678999999999987 34789999999999999999999999998753 111101110000 000000
Q ss_pred CCCCCcccHHHHHHHHhcCCCCCcEEEEcCCCC---------chHHHHHHHHHccCCCeeEccccHHHHHhC
Q 022972 151 GVPTLSYNKQFLSKVEEKLPKDTDLIVACQKGL---------RSLAACELLYNAGYRNLFWVQGGLEAAEEE 213 (289)
Q Consensus 151 g~~~~~~~~~f~~~~~~~l~k~~~IVvyC~~G~---------RS~~aa~~L~~~G~~nV~~L~GG~~aw~~~ 213 (289)
+. . . + ...++++|||||++|. +|..++..|...|| +|+.|+|||.+|.+.
T Consensus 84 ~~---~---~----~--~~~~~~~IVvyc~~g~~~~~~~~~~~s~~a~~~L~~~G~-~v~~L~GG~~~W~~~ 142 (158)
T 3tg1_B 84 GK---D---S----F--KRIFSKEIIVYDENTNEPSRVMPSQPLHIVLESLKREGK-EPLVLKGGLSSFKQN 142 (158)
T ss_dssp SS---C---S----S--TTTTTSCEEEECSCCSCTTSCCSSSHHHHHHHHHHTTTC-CEEEETTHHHHHTSS
T ss_pred HH---H---H----H--hccCCCeEEEEECCCCcccccCcchHHHHHHHHHHhCCC-cEEEeCCcHHHHHHH
Confidence 00 0 0 0 0124789999999884 58899999999999 699999999999775
No 54
>1whb_A KIAA0055; deubiqutinating enzyme, UBPY, structural genomics, riken structural genomics/proteomics initiative, RSGI, hydrolase; NMR {Homo sapiens} SCOP: c.46.1.4
Probab=99.73 E-value=4e-18 Score=143.23 Aligned_cols=120 Identities=15% Similarity=0.015 Sum_probs=79.8
Q ss_pred CCcceeCHHHHHHhhcCC--CcEEEEeCChhhhhhccCCCcEeeCCCCCcccccCCCCCccccccccCCccCCCCCCccc
Q 022972 81 GKVKVLTPREAGYAVQLS--SKTLLDVRPSTERKKAWIKGSIWIPIFDIDDTFDAGSLPQKVTNFVMGGWWSGVPTLSYN 158 (289)
Q Consensus 81 ~~~~~Is~~el~~~l~~~--~~vlIDVRs~~Ey~~ghIPGAinIP~~~~~~~~~vgtlyk~~~~~~~~a~~~g~~~~~~~ 158 (289)
...+.|+++|+.++++.+ +.+|||||++.||+.||||||+|||...+........+ .. ..
T Consensus 12 ~~~~~i~~~~l~~~l~~~~~~~~liDvR~~~ey~~gHI~gainip~~~~~~~~~~~~l----------------~~--~l 73 (157)
T 1whb_A 12 KEKGAITAKELYTMMTDKNISLIIMDARRMQDYQDSCILHSLSVPEEAISPGVTASWI----------------EA--HL 73 (157)
T ss_dssp CCCSEECHHHHHHHHTCSSSCEEEEEESCHHHHHHCCBTTCEEECSSSCCTTCCHHHH----------------HH--SC
T ss_pred ccCCccCHHHHHHHHhcCCCCeEEEECCCHHHHHhccccCCcccCHHHccCCCcHHHH----------------HH--HC
Confidence 456789999999998766 88999999999999999999999998765432100000 00 00
Q ss_pred HHHHHHHHhcCCCCCcEEEEcCCCCc----hHHHHHHHHHc--------cCCC-eeEccccHHHHHhCCCCccC
Q 022972 159 KQFLSKVEEKLPKDTDLIVACQKGLR----SLAACELLYNA--------GYRN-LFWVQGGLEAAEEEDLVREG 219 (289)
Q Consensus 159 ~~f~~~~~~~l~k~~~IVvyC~~G~R----S~~aa~~L~~~--------G~~n-V~~L~GG~~aw~~~gl~~~~ 219 (289)
++...++.....+.+.||+||+++.+ +..+++.|.+. ||.+ |+.|+|||++|++. +|...
T Consensus 74 p~~~~~~~~~~~~~~~VVvy~~~~~~~~~~a~~~~~~L~~~L~~~~~~~~~~~~V~~L~GG~~aW~~~-~p~~~ 146 (157)
T 1whb_A 74 PDDSKDTWKKRGNVEYVVLLDWFSSAKDLQIGTTLRSLKDALFKWESKTVLRNEPLVLEGGYENWLLC-YPQYT 146 (157)
T ss_dssp CTTHHHHHHGGGTSSEEEEECSSCCGGGCCTTCHHHHHHHTTTTTCSSCCCSSCCEEESSCHHHHHHH-CGGGB
T ss_pred ChHHHHHHHhcCCCCEEEEECCCCCccccccccHHHHHHHHHHHhccccccCCCeEEEcchHHHHHHH-Chhhh
Confidence 11111221222233459999976653 34556666632 4543 99999999999985 77653
No 55
>2wlr_A Putative thiosulfate sulfurtransferase YNJE; rhodanese domains; HET: EPE; 1.45A {Escherichia coli} PDB: 2wlx_A* 3ipo_A* 3ipp_A
Probab=99.72 E-value=1.1e-17 Score=161.20 Aligned_cols=115 Identities=13% Similarity=0.168 Sum_probs=93.6
Q ss_pred ceeCHHHHHHhhc--------CCCcEEEEeC--ChhhhhhccCCCcEeeCCCCCcccccCCCCCccccccccCCccCCCC
Q 022972 84 KVLTPREAGYAVQ--------LSSKTLLDVR--PSTERKKAWIKGSIWIPIFDIDDTFDAGSLPQKVTNFVMGGWWSGVP 153 (289)
Q Consensus 84 ~~Is~~el~~~l~--------~~~~vlIDVR--s~~Ey~~ghIPGAinIP~~~~~~~~~vgtlyk~~~~~~~~a~~~g~~ 153 (289)
..++++++.++++ .++.+||||| ++.||..||||||+|+|+.++.+.. .
T Consensus 124 ~~i~~~~l~~~~~~~~~~~~~~~~~~liDvR~~~~~e~~~ghIpgA~nip~~~~~~~~---------------------~ 182 (423)
T 2wlr_A 124 QLVYPQWLHDLQQGKEVTAKPAGDWKVIEAAWGAPKLYLISHIPGADYIDTNEVESEP---------------------L 182 (423)
T ss_dssp GEECHHHHHHHHTTCCCTTCCSSCEEEEEEESSSCSHHHHCBCTTCEEEEGGGTEETT---------------------T
T ss_pred cccCHHHHHHHhhccccccccCCCeEEEEecCCCchhhccCcCCCcEEcCHHHhccCC---------------------C
Confidence 5789999988776 2478999999 9999999999999999997653210 1
Q ss_pred CCcccH-HHHHHHHh-cCCCCCcEEEEcCCCCchHHHHHHHHHccCCCeeEccccHHHHHhCCCCccC
Q 022972 154 TLSYNK-QFLSKVEE-KLPKDTDLIVACQKGLRSLAACELLYNAGYRNLFWVQGGLEAAEEEDLVREG 219 (289)
Q Consensus 154 ~~~~~~-~f~~~~~~-~l~k~~~IVvyC~~G~RS~~aa~~L~~~G~~nV~~L~GG~~aw~~~gl~~~~ 219 (289)
.+.+.+ ++.+.+.+ .++++++||+||++|.||..+++.|+.+||+||+.|+||+.+|.+.++|+++
T Consensus 183 ~~~~~~~~l~~~~~~~gi~~~~~ivvyC~~G~~a~~~~~~L~~~G~~~v~~l~Gg~~~W~~~g~pv~~ 250 (423)
T 2wlr_A 183 WNKVSDEQLKAMLAKHGIRHDTTVILYGRDVYAAARVAQIMLYAGVKDVRLLDGGWQTWSDAGLPVER 250 (423)
T ss_dssp TEECCHHHHHHHHHHTTCCTTSEEEEECSSHHHHHHHHHHHHHHTCSCEEEETTTHHHHHHTTCCCBC
T ss_pred CCCCCHHHHHHHHHHcCCCCCCeEEEECCCchHHHHHHHHHHHcCCCCeEEECCCHHHHhhCCCCccc
Confidence 222333 44334432 3688999999999999999999999999999999999999999999999886
No 56
>2gwf_A Ubiquitin carboxyl-terminal hydrolase 8; protein-protein complex, E3 ligase, protein ubiquitination, hydrolase, protease, UBL conjugation pathway; 2.30A {Homo sapiens} SCOP: c.46.1.4
Probab=99.72 E-value=5.8e-18 Score=142.58 Aligned_cols=119 Identities=14% Similarity=-0.012 Sum_probs=78.7
Q ss_pred CCcceeCHHHHHHhhcCC--CcEEEEeCChhhhhhccCCCcEeeCCCCCcccccCCCCCccccccccCCccCCCCCCccc
Q 022972 81 GKVKVLTPREAGYAVQLS--SKTLLDVRPSTERKKAWIKGSIWIPIFDIDDTFDAGSLPQKVTNFVMGGWWSGVPTLSYN 158 (289)
Q Consensus 81 ~~~~~Is~~el~~~l~~~--~~vlIDVRs~~Ey~~ghIPGAinIP~~~~~~~~~vgtlyk~~~~~~~~a~~~g~~~~~~~ 158 (289)
...+.|+++|+.++++.+ +.+|||||++.||+.||||||+|||...+........+ ....
T Consensus 17 ~~~~~is~~~l~~~l~~~~~~~~liDvR~~~ey~~gHI~gAinip~~~l~~~~~~~~l------------------~~~l 78 (157)
T 2gwf_A 17 RGSGAITAKELYTMMTDKNISLIIMDARRMQDYQDSCILHSLSVPEEAISPGVTASWI------------------EAHL 78 (157)
T ss_dssp --CCEECHHHHHHHHHSTTSCEEEEECSCHHHHHHSCBTTCEECCGGGCCTTCCHHHH------------------HHTS
T ss_pred CCCCccCHHHHHHHHhcCCCCeEEEECCCHHHHHhcCccCCcccCHHHcCCCCcHHHH------------------HHHc
Confidence 456789999999998766 88999999999999999999999998765432100000 0011
Q ss_pred HHHHHHHHhcCCCCCcEEEEcCCCCc----hHHHHHHHH----Hc----cCCC-eeEccccHHHHHhCCCCcc
Q 022972 159 KQFLSKVEEKLPKDTDLIVACQKGLR----SLAACELLY----NA----GYRN-LFWVQGGLEAAEEEDLVRE 218 (289)
Q Consensus 159 ~~f~~~~~~~l~k~~~IVvyC~~G~R----S~~aa~~L~----~~----G~~n-V~~L~GG~~aw~~~gl~~~ 218 (289)
|+..+++.....+.+.||+||+++.+ +..+++.|. .. ||.+ |+.|+|||++|++. +|..
T Consensus 79 p~~~~~l~~~~~~~~~VVvy~~~~~~~~~~a~~~l~~L~~~L~~~~~~~~~~~~V~~L~GG~~aW~~~-~p~~ 150 (157)
T 2gwf_A 79 PDDSKDTWKKRGNVEYVVLLDWFSSAKDLQIGTTLRSLKDALFKWESKTVLRNEPLVLEGGYENWLLC-YPQY 150 (157)
T ss_dssp CHHHHHHHHTTTTSSEEEEECSSCCGGGCCTTCHHHHHHHHHHTSCCSSCCSSCCEEETTHHHHHHHH-CGGG
T ss_pred CHHHHHHHHhcCCCCEEEEEcCCCCccccCcccHHHHHHHHHHhhccccccCCceEEEccHHHHHHHH-Chhh
Confidence 22222333333344469999976653 344556655 22 4543 99999999999984 7654
No 57
>3ics_A Coenzyme A-disulfide reductase; pyridine nucleotide-disulfide oxidoreductase class I, rhodan coenzyme A, flavin adenine dinucleotide; HET: FAD COA ADP; 1.94A {Bacillus anthracis} PDB: 3icr_A* 3ict_A*
Probab=99.71 E-value=7.2e-18 Score=167.83 Aligned_cols=99 Identities=35% Similarity=0.573 Sum_probs=88.4
Q ss_pred hhCCCcceeCHHHHHHhhcCCCcEEEEeCChhhhhhccCCCcEeeCCCCCcccccCCCCCccccccccCCccCCCCCCcc
Q 022972 78 IRDGKVKVLTPREAGYAVQLSSKTLLDVRPSTERKKAWIKGSIWIPIFDIDDTFDAGSLPQKVTNFVMGGWWSGVPTLSY 157 (289)
Q Consensus 78 ~~~~~~~~Is~~el~~~l~~~~~vlIDVRs~~Ey~~ghIPGAinIP~~~~~~~~~vgtlyk~~~~~~~~a~~~g~~~~~~ 157 (289)
.....++.|+++|+.++++ ++.+|||||++.||+.||||||+|||+.++.++.
T Consensus 483 ~~~~~~~~i~~~~~~~~~~-~~~~~iDvR~~~e~~~ghi~ga~~ip~~~l~~~~-------------------------- 535 (588)
T 3ics_A 483 IVDGFVDTVQWHEIDRIVE-NGGYLIDVREPNELKQGMIKGSINIPLDELRDRL-------------------------- 535 (588)
T ss_dssp HHTTSCCEECTTTHHHHHH-TTCEEEECSCGGGGGGCBCTTEEECCHHHHTTCG--------------------------
T ss_pred ccccccceecHHHHHHHhc-CCCEEEEcCCHHHHhcCCCCCCEECCHHHHHHHH--------------------------
Confidence 3457789999999999885 4689999999999999999999999987765543
Q ss_pred cHHHHHHHHhcCCCCCcEEEEcCCCCchHHHHHHHHHccCCCeeEccccHHHHHhC
Q 022972 158 NKQFLSKVEEKLPKDTDLIVACQKGLRSLAACELLYNAGYRNLFWVQGGLEAAEEE 213 (289)
Q Consensus 158 ~~~f~~~~~~~l~k~~~IVvyC~~G~RS~~aa~~L~~~G~~nV~~L~GG~~aw~~~ 213 (289)
..++++++||+||++|.||..+++.|+.+||+ |+.|+||+.+|++.
T Consensus 536 ---------~~l~~~~~iv~~C~~g~rs~~a~~~l~~~G~~-v~~l~GG~~~w~~~ 581 (588)
T 3ics_A 536 ---------EEVPVDKDIYITCQLGMRGYVAARMLMEKGYK-VKNVDGGFKLYGTV 581 (588)
T ss_dssp ---------GGSCSSSCEEEECSSSHHHHHHHHHHHHTTCC-EEEETTHHHHHHHH
T ss_pred ---------hhCCCCCeEEEECCCCcHHHHHHHHHHHcCCc-EEEEcchHHHHHhh
Confidence 35788999999999999999999999999998 99999999999875
No 58
>2eg4_A Probable thiosulfate sulfurtransferase; structural genomics, NPPSFA, national Pro protein structural and functional analyses; 1.70A {Thermus thermophilus} PDB: 2eg3_A
Probab=99.68 E-value=4.7e-17 Score=144.14 Aligned_cols=97 Identities=14% Similarity=0.089 Sum_probs=75.4
Q ss_pred CCCcEEEEeCChhhhhhccCCCcEeeCCC--CCcccccCCCCCccccccccCCccCCCCCCcccHHHHHHHHhcCCCCCc
Q 022972 97 LSSKTLLDVRPSTERKKAWIKGSIWIPIF--DIDDTFDAGSLPQKVTNFVMGGWWSGVPTLSYNKQFLSKVEEKLPKDTD 174 (289)
Q Consensus 97 ~~~~vlIDVRs~~Ey~~ghIPGAinIP~~--~~~~~~~vgtlyk~~~~~~~~a~~~g~~~~~~~~~f~~~~~~~l~k~~~ 174 (289)
.++.+|||||++.||..||||||+|+|+. ++..+ ..+.+.+.++.+++....++.+++
T Consensus 4 ~~~~~iiDvR~~~ey~~ghIpgAi~ip~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~l~~~~~ 63 (230)
T 2eg4_A 4 PEDAVLVDTRPRPAYEAGHLPGARHLDLSAPKLRLR--------------------EEAELKALEGGLTELFQTLGLRSP 63 (230)
T ss_dssp CTTCEEEECSCHHHHHHCBCTTCEECCCCSCCCCCC--------------------SHHHHHHHHHHHHHHHHHTTCCSS
T ss_pred CCCEEEEECCChhhHhhCcCCCCEECCccchhcccC--------------------CCCCcCCCHHHHHHHHHhcCCCCE
Confidence 45789999999999999999999999987 43210 011233334444555556666889
Q ss_pred EEEEcCCCC-chHHHHHHHHHccCCCeeEccccHHHHHhCCCCccC
Q 022972 175 LIVACQKGL-RSLAACELLYNAGYRNLFWVQGGLEAAEEEDLVREG 219 (289)
Q Consensus 175 IVvyC~~G~-RS~~aa~~L~~~G~~nV~~L~GG~~aw~~~gl~~~~ 219 (289)
|||||++|. +|..+++.|+ +||+||++|+|| |.+ +|+++
T Consensus 64 ivvyc~~g~~~s~~a~~~L~-~G~~~v~~l~GG---W~~--~p~~~ 103 (230)
T 2eg4_A 64 VVLYDEGLTSRLCRTAFFLG-LGGLEVQLWTEG---WEP--YATEK 103 (230)
T ss_dssp EEEECSSSCHHHHHHHHHHH-HTTCCEEEECSS---CGG--GCCBC
T ss_pred EEEEcCCCCccHHHHHHHHH-cCCceEEEeCCC---Ccc--CcccC
Confidence 999999888 9999999999 999999999999 877 77653
No 59
>1okg_A Possible 3-mercaptopyruvate sulfurtransferase; rhodanese, prolyl isomerase, catalytic triad, serine protease, leishmania pyruvate; HET: CSR; 2.10A {Leishmania major} SCOP: c.46.1.2 c.46.1.2 d.26.1.3
Probab=99.66 E-value=6.7e-17 Score=153.92 Aligned_cols=101 Identities=11% Similarity=0.093 Sum_probs=78.4
Q ss_pred CCCcEEEEeCChhhhh-----------hccCCCcEeeCCCCCc--ccccCCCCCccccccccCCccCCCCCCcccHHHHH
Q 022972 97 LSSKTLLDVRPSTERK-----------KAWIKGSIWIPIFDID--DTFDAGSLPQKVTNFVMGGWWSGVPTLSYNKQFLS 163 (289)
Q Consensus 97 ~~~~vlIDVRs~~Ey~-----------~ghIPGAinIP~~~~~--~~~~vgtlyk~~~~~~~~a~~~g~~~~~~~~~f~~ 163 (289)
.++.+|||||++.||. .||||||+|||+.++. +.. ++ ..+.++.++
T Consensus 172 ~~~~~lIDvR~~~Ef~G~~~~~~~~~~~GhIpGAiniP~~~l~~~~~~--~~-------------------~~~~~~~l~ 230 (373)
T 1okg_A 172 PPQAIITDARSADRFASTVRPYAADKMPGHIEGARNLPYTSHLVTRGD--GK-------------------VLRSEEEIR 230 (373)
T ss_dssp CTTCCEEECSCHHHHTCCSSCCTTCSSSSCSTTCEECCGGGGEECCSS--SC-------------------EECCHHHHH
T ss_pred ccCceEEeCCCHHHccccccccccCCcCccCCCcEEecHHHhhccCCC--CC-------------------ccCCHHHHH
Confidence 4578999999999999 9999999999998764 210 10 012334444
Q ss_pred HHHhc----CCC---CCcEEEEcCCCCchHHHHHHHHHccCCCeeEccccHHHHHh-CCCCcc
Q 022972 164 KVEEK----LPK---DTDLIVACQKGLRSLAACELLYNAGYRNLFWVQGGLEAAEE-EDLVRE 218 (289)
Q Consensus 164 ~~~~~----l~k---~~~IVvyC~~G~RS~~aa~~L~~~G~~nV~~L~GG~~aw~~-~gl~~~ 218 (289)
+.... +++ +++||+||++|.||..++..|+.+||+||+.|+||+.+|.. .++|++
T Consensus 231 ~~~~~~~~gi~~~~~d~~ivvyC~sG~rs~~a~~~L~~~G~~~v~~~~GG~~~W~~~~~~pv~ 293 (373)
T 1okg_A 231 HNIMTVVQGAGDAADLSSFVFSCGSGVTACINIALVHHLGLGHPYLYCGSWSEYSGLFRPPIM 293 (373)
T ss_dssp HHHHTTCC-----CCCTTSEEECSSSSTHHHHHHHHHHTTSCCCEECSSHHHHHHHHTHHHHH
T ss_pred HHHHhhhcCCCcccCCCCEEEECCchHHHHHHHHHHHHcCCCCeeEeCChHHHHhcCCCCCcc
Confidence 43333 377 89999999999999999999999999999999999999987 688865
No 60
>3r2u_A Metallo-beta-lactamase family protein; structural genomics, for structural genomics of infectious diseases, csgid, HYDR; 2.10A {Staphylococcus aureus}
Probab=99.64 E-value=1.3e-17 Score=162.86 Aligned_cols=87 Identities=24% Similarity=0.360 Sum_probs=0.0
Q ss_pred HHHhhcCCCcEEEEeCChhhhhhccCCCcEeeCCCCCcccccCCCCCccccccccCCccCCCCCCcccHHHHHHHHhcCC
Q 022972 91 AGYAVQLSSKTLLDVRPSTERKKAWIKGSIWIPIFDIDDTFDAGSLPQKVTNFVMGGWWSGVPTLSYNKQFLSKVEEKLP 170 (289)
Q Consensus 91 l~~~l~~~~~vlIDVRs~~Ey~~ghIPGAinIP~~~~~~~~~vgtlyk~~~~~~~~a~~~g~~~~~~~~~f~~~~~~~l~ 170 (289)
+.++++.++.+|||||++.||+.||||||+|+|+.++.++. ..++
T Consensus 379 ~~~~~~~~~~~liDvR~~~e~~~ghIpgA~~ip~~~l~~~~-----------------------------------~~l~ 423 (466)
T 3r2u_A 379 HSEDITGNESHILDVRNDNEWNNGHLSQAVHVPHGKLLETD-----------------------------------LPFN 423 (466)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHhCCCcEEEEeCCHHHHhcCcCCCCEECCHHHHHHHH-----------------------------------hhCC
Confidence 34444556789999999999999999999999998766543 2478
Q ss_pred CCCcEEEEcCCCCchHHHHHHHHHccCCCeeEccccHHHHHh
Q 022972 171 KDTDLIVACQKGLRSLAACELLYNAGYRNLFWVQGGLEAAEE 212 (289)
Q Consensus 171 k~~~IVvyC~~G~RS~~aa~~L~~~G~~nV~~L~GG~~aw~~ 212 (289)
++++||+||++|.||..++..|+.+||+||+.|+||+.+|++
T Consensus 424 ~~~~iv~~C~~G~rs~~a~~~L~~~G~~~v~~l~GG~~~W~~ 465 (466)
T 3r2u_A 424 KNDVIYVHCQSGIRSSIAIGILEHKGYHNIINVNEGYKDIQL 465 (466)
T ss_dssp ------------------------------------------
T ss_pred CCCeEEEECCCChHHHHHHHHHHHcCCCCEEEecChHHHHhh
Confidence 889999999999999999999999999999999999999975
No 61
>3utn_X Thiosulfate sulfurtransferase TUM1; rhodanese-like domain; 1.90A {Saccharomyces cerevisiae}
Probab=99.63 E-value=1.8e-15 Score=141.89 Aligned_cols=120 Identities=18% Similarity=0.156 Sum_probs=96.3
Q ss_pred CCcceeCHHHHHHhhcCC---CcEEEEeC---------Chhhh-hhccCCCcEeeCCCCCcccccCCCCCccccccccCC
Q 022972 81 GKVKVLTPREAGYAVQLS---SKTLLDVR---------PSTER-KKAWIKGSIWIPIFDIDDTFDAGSLPQKVTNFVMGG 147 (289)
Q Consensus 81 ~~~~~Is~~el~~~l~~~---~~vlIDVR---------s~~Ey-~~ghIPGAinIP~~~~~~~~~vgtlyk~~~~~~~~a 147 (289)
...+.|||+|+.++++.+ .+++||++ ...|| +++|||||++++++.+.+.
T Consensus 25 ~~~~LIsp~~l~~ll~~~~~~rvv~lDasw~lP~~~r~~~~E~~~~~HIPGAv~~Dld~~~d~----------------- 87 (327)
T 3utn_X 25 PLFDLISPKAFVKLVASEKVHRIVPVDATWYLPSWKLDNKVDFLTKPRIPNSIFFDIDAISDK----------------- 87 (327)
T ss_dssp CSCEEECHHHHHHHHHHCSSSCEEEEECCCCCGGGCCCHHHHHHHSCBCTTCEECCTTTSSCT-----------------
T ss_pred ccccccCHHHHHHHHhCCCCCcEEEEEecCCCCCCCCCHHHHHHhhCcCCCCeeeChHHhcCC-----------------
Confidence 455689999999998643 47899996 23577 7899999999998765432
Q ss_pred ccCCCCCCcccHHHHHHHHhc--CCCCCcEEEEcCCC-CchHHHHHHHHHccCCCeeEccccHHHHHhCCCCccC
Q 022972 148 WWSGVPTLSYNKQFLSKVEEK--LPKDTDLIVACQKG-LRSLAACELLYNAGYRNLFWVQGGLEAAEEEDLVREG 219 (289)
Q Consensus 148 ~~~g~~~~~~~~~f~~~~~~~--l~k~~~IVvyC~~G-~RS~~aa~~L~~~G~~nV~~L~GG~~aw~~~gl~~~~ 219 (289)
...+++|.+.++.+++.... +.++++||||++++ ..+.+++|.|+.+|++||++|+|| .+|+++|+|+++
T Consensus 88 -~~~~ph~LP~~~~f~~~l~~lGI~~d~~VVvYD~~~~~~AaR~wW~Lr~~Gh~~V~vLdGg-~aW~~~g~p~~~ 160 (327)
T 3utn_X 88 -KSPYPHMFPTKKVFDDAMSNLGVQKDDILVVYDRVGNFSSPRCAWTLGVMGHPKVYLLNNF-NQYREFKYPLDS 160 (327)
T ss_dssp -TSSSTTCCCCHHHHHHHHHHTTCCTTCEEEEECSSSSSSHHHHHHHHHHTTCSEEEEESCH-HHHHHTTCCCBC
T ss_pred -CCCCCCCCcCHHHHHHHHHHcCCCCCCEEEEEeCCCCcHHHHHHHHHHHcCCCceeecccH-HHHHHhCCCccc
Confidence 24567778777666666554 78999999999754 468899999999999999999977 999999999875
No 62
>3tp9_A Beta-lactamase and rhodanese domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.70A {Alicyclobacillus acidocaldarius subsp}
Probab=99.58 E-value=1.6e-15 Score=147.58 Aligned_cols=104 Identities=17% Similarity=0.152 Sum_probs=85.2
Q ss_pred CCCcceeCHHHHHHhhcCCCcEEEEeCChhhhhhccCCCcEeeCCCCCcccccCCCCCccccccccCCccCCCCCCcccH
Q 022972 80 DGKVKVLTPREAGYAVQLSSKTLLDVRPSTERKKAWIKGSIWIPIFDIDDTFDAGSLPQKVTNFVMGGWWSGVPTLSYNK 159 (289)
Q Consensus 80 ~~~~~~Is~~el~~~l~~~~~vlIDVRs~~Ey~~ghIPGAinIP~~~~~~~~~vgtlyk~~~~~~~~a~~~g~~~~~~~~ 159 (289)
...++.|+++|+.+++++ + +|||||++.||+.||||||+|+|+..
T Consensus 269 ~~~~~~is~~~l~~~l~~-~-~iiD~R~~~~y~~ghIpGA~~i~~~~--------------------------------- 313 (474)
T 3tp9_A 269 APERVDLPPERVRAWREG-G-VVLDVRPADAFAKRHLAGSLNIPWNK--------------------------------- 313 (474)
T ss_dssp CCEECCCCGGGHHHHHHT-S-EEEECSCHHHHHHSEETTCEECCSST---------------------------------
T ss_pred cCCCceeCHHHHHHHhCC-C-EEEECCChHHHhccCCCCeEEECcch---------------------------------
Confidence 455778999999998876 4 99999999999999999999999853
Q ss_pred HHHHHHHhcCCCCCcEEEEcCCCCchHHHHHHHHHccCCCeeEccccHHHHHhCCCCccC
Q 022972 160 QFLSKVEEKLPKDTDLIVACQKGLRSLAACELLYNAGYRNLFWVQGGLEAAEEEDLVREG 219 (289)
Q Consensus 160 ~f~~~~~~~l~k~~~IVvyC~~G~RS~~aa~~L~~~G~~nV~~L~GG~~aw~~~gl~~~~ 219 (289)
.|.+.+....+++++|||||++|. +..+++.|+.+||++|+.+.+|+.+|+.++.++..
T Consensus 314 ~~~~~~~~l~~~~~~vvvy~~~~~-~~~~~~~L~~~G~~~v~~~l~G~~~W~~~g~~~~~ 372 (474)
T 3tp9_A 314 SFVTWAGWLLPADRPIHLLAADAI-APDVIRALRSIGIDDVVDWTDPAAVDRAAPDDVAS 372 (474)
T ss_dssp THHHHHHHHCCSSSCEEEECCTTT-HHHHHHHHHHTTCCCEEEEECGGGGTTCCGGGEEC
T ss_pred HHHHHHHhcCCCCCeEEEEECCCc-HHHHHHHHHHcCCcceEEecCcHHHHHhccccccc
Confidence 122222233478889999998776 66699999999999999866799999998877653
No 63
>3utn_X Thiosulfate sulfurtransferase TUM1; rhodanese-like domain; 1.90A {Saccharomyces cerevisiae}
Probab=99.54 E-value=1.9e-14 Score=134.93 Aligned_cols=113 Identities=17% Similarity=0.082 Sum_probs=83.6
Q ss_pred eeCHHHHHHhhcCC----CcEEEEeCChhhhh-----------hccCCCcEeeCCCCCcccccCCCCCccccccccCCcc
Q 022972 85 VLTPREAGYAVQLS----SKTLLDVRPSTERK-----------KAWIKGSIWIPIFDIDDTFDAGSLPQKVTNFVMGGWW 149 (289)
Q Consensus 85 ~Is~~el~~~l~~~----~~vlIDVRs~~Ey~-----------~ghIPGAinIP~~~~~~~~~vgtlyk~~~~~~~~a~~ 149 (289)
.++.+++.+.++.+ +.+|||+|+++||. .||||||+|+|+.++.+.. ++.++.
T Consensus 185 v~~~~~v~~~v~~~~~~~~~~lvDaRs~~rf~G~~~ep~~~~r~GHIPGA~nlP~~~~ld~~--~~~~~~---------- 252 (327)
T 3utn_X 185 IVDYEEMFQLVKSGELAKKFNAFDARSLGRFEGTEPEPRSDIPSGHIPGTQPLPYGSLLDPE--TKTYPE---------- 252 (327)
T ss_dssp EECHHHHHHHHHTTCHHHHCEEEECSCHHHHHTSSCCSSSSCCCCBCTTEEECCGGGGSCTT--TCCCCC----------
T ss_pred eecHHHHhhhhhcccccccceeeccCccceecccccCccccccCCCCCCCcccChhhccCCC--CCCCCC----------
Confidence 57888888877653 57899999999995 4999999999998765321 111110
Q ss_pred CCCCCCcccHHHHHHHH----hcCCCCCcEEEEcCCCCchHHHHHHHHHccCCCeeEccccHHHHHhC
Q 022972 150 SGVPTLSYNKQFLSKVE----EKLPKDTDLIVACQKGLRSLAACELLYNAGYRNLFWVQGGLEAAEEE 213 (289)
Q Consensus 150 ~g~~~~~~~~~f~~~~~----~~l~k~~~IVvyC~~G~RS~~aa~~L~~~G~~nV~~L~GG~~aw~~~ 213 (289)
........+++.. ..++++++||+||.+|.+|+..+..|+.+||+|+.+++|++..|...
T Consensus 253 ----~~e~l~~~l~~~~~~~~~gid~~k~vI~yCgsGvtA~~~~laL~~lG~~~v~lYdGSWsEW~~r 316 (327)
T 3utn_X 253 ----AGEAIHATLEKALKDFHCTLDPSKPTICSCGTGVSGVIIKTALELAGVPNVRLYDGSWTEWVLK 316 (327)
T ss_dssp ----TTHHHHHHHHHHHHHTTCCCCTTSCEEEECSSSHHHHHHHHHHHHTTCCSEEEESSHHHHHHHH
T ss_pred ----cHHHHHHHHHHHHHHhhcCCCCCCCEEEECChHHHHHHHHHHHHHcCCCCceeCCCcHHHhccc
Confidence 0001112233322 24678899999999999999999999999999999999999999764
No 64
>3r2u_A Metallo-beta-lactamase family protein; structural genomics, for structural genomics of infectious diseases, csgid, HYDR; 2.10A {Staphylococcus aureus}
Probab=99.21 E-value=1.4e-11 Score=120.05 Aligned_cols=79 Identities=18% Similarity=0.174 Sum_probs=61.0
Q ss_pred CCcEEEEeCChhhhhhccCCCcEeeCCCCCcccccCCCCCccccccccCCccCCCCCCcccHHHHHHHHhcCCCCCcEEE
Q 022972 98 SSKTLLDVRPSTERKKAWIKGSIWIPIFDIDDTFDAGSLPQKVTNFVMGGWWSGVPTLSYNKQFLSKVEEKLPKDTDLIV 177 (289)
Q Consensus 98 ~~~vlIDVRs~~Ey~~ghIPGAinIP~~~~~~~~~vgtlyk~~~~~~~~a~~~g~~~~~~~~~f~~~~~~~l~k~~~IVv 177 (289)
++.+|||+|++.||+.||||||+|+|+... |...+...++++++||+
T Consensus 295 ~~~~ilD~R~~~~y~~gHIpGAv~ip~~~~---------------------------------~~~~~~~~~~~~~~vvl 341 (466)
T 3r2u_A 295 TNRLTFDLRSKEAYHGGHIEGTINIPYDKN---------------------------------FINQIGWYLNYDQEINL 341 (466)
T ss_dssp CCSEEEECSCHHHHHHSCCTTCEECCSSTT---------------------------------HHHHHTTTCCTTSCEEE
T ss_pred CCeEEEECCCHHHHhhCCCCCcEECCccHH---------------------------------HHHHHHhccCCCCeEEE
Confidence 578999999999999999999999998631 11122223578899999
Q ss_pred EcCCCCchHHHHHHHHHccCCCeeE-ccccHHHH
Q 022972 178 ACQKGLRSLAACELLYNAGYRNLFW-VQGGLEAA 210 (289)
Q Consensus 178 yC~~G~RS~~aa~~L~~~G~~nV~~-L~GG~~aw 210 (289)
||+ +.++..+++.|+.+||++|+. ++|+.-.|
T Consensus 342 y~~-~~~a~~a~~~L~~~G~~~v~~~l~g~~~~~ 374 (466)
T 3r2u_A 342 IGD-YHLVSKATHTLQLIGYDDIAGYQLPQSKIQ 374 (466)
T ss_dssp ESC-HHHHHHHHHHHHTTTCCCEEEEECCC----
T ss_pred EEC-CchHHHHHHHhhhhhcccccccccCccccc
Confidence 999 458999999999999999987 66654443
No 65
>2f46_A Hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, hydrolase; HET: MSE; 1.41A {Neisseria meningitidis Z2491}
Probab=97.93 E-value=1.1e-05 Score=66.82 Aligned_cols=102 Identities=21% Similarity=0.238 Sum_probs=60.6
Q ss_pred eeCHHHHHHhhcCCCcEEEEeCChhh------------hhhc-cCCCcEeeCCCCCcccccCCCCCccccccccCCccCC
Q 022972 85 VLTPREAGYAVQLSSKTLLDVRPSTE------------RKKA-WIKGSIWIPIFDIDDTFDAGSLPQKVTNFVMGGWWSG 151 (289)
Q Consensus 85 ~Is~~el~~~l~~~~~vlIDVRs~~E------------y~~g-hIPGAinIP~~~~~~~~~vgtlyk~~~~~~~~a~~~g 151 (289)
.++++++..+.+.+-..|||+|++.| +.+. +|+|.+|+|+.+..
T Consensus 29 ~~~~~d~~~L~~~Gi~~IIdlR~~~E~~~~p~~~~~~~~~~~~gi~~~~~iPv~~~~----------------------- 85 (156)
T 2f46_A 29 QLTKADAEQIAQLGIKTIICNRPDREEESQPDFAQIKQWLEQAGVTGFHHQPVTARD----------------------- 85 (156)
T ss_dssp CCCGGGHHHHHHHTCCEEEECSCTTSSTTCCCHHHHHHHHGGGTCCEEEECCCCTTT-----------------------
T ss_pred CCCHHHHHHHHHCCCCEEEECCCCccccCCCcHHHHHHHHHHCCCHhheECccCCCC-----------------------
Confidence 35677766655444468999998766 3344 59999999987521
Q ss_pred CCCCcccHHHHHHHHhcC-CCCCcEEEEcCCCCchHHHHHHH-HHccCCCeeEccccHHHHHhCCCCcc
Q 022972 152 VPTLSYNKQFLSKVEEKL-PKDTDLIVACQKGLRSLAACELL-YNAGYRNLFWVQGGLEAAEEEDLVRE 218 (289)
Q Consensus 152 ~~~~~~~~~f~~~~~~~l-~k~~~IVvyC~~G~RS~~aa~~L-~~~G~~nV~~L~GG~~aw~~~gl~~~ 218 (289)
+.++.+.++.+.+ ..+++|+|||++|.||..++..+ ...|.+ .+.=++..++.|+...
T Consensus 86 -----~~~~~~~~~~~~l~~~~~pVlvHC~sG~Rs~~l~al~l~~~g~~----~~~a~~~~~~~g~~l~ 145 (156)
T 2f46_A 86 -----IQKHDVETFRQLIGQAEYPVLAYCRTGTRCSLLWGFRRAAEGMP----VDEIIRRAQAAGVNLE 145 (156)
T ss_dssp -----CCHHHHHHHHHHHHTSCSSEEEECSSSHHHHHHHHHHHHHTTCC----HHHHHHHHHHTTCCCG
T ss_pred -----CCHHHHHHHHHHHHhCCCCEEEECCCCCCHHHHHHHHHHHcCCC----HHHHHHHHHHcCCCcH
Confidence 0112222222222 24679999999999988554432 334553 2223445555565543
No 66
>4erc_A Dual specificity protein phosphatase 23; alpha beta, phosphatase(hydrolase), hydrolase; 1.15A {Homo sapiens} PDB: 2img_A
Probab=94.28 E-value=0.099 Score=41.55 Aligned_cols=88 Identities=18% Similarity=0.253 Sum_probs=46.9
Q ss_pred HHHHHHhhcCCCcEEEEeCChhhhhhccCCCc--EeeCCCCCcccccCCCCCccccccccCCccCCCCCCcccHHHHHHH
Q 022972 88 PREAGYAVQLSSKTLLDVRPSTERKKAWIKGS--IWIPIFDIDDTFDAGSLPQKVTNFVMGGWWSGVPTLSYNKQFLSKV 165 (289)
Q Consensus 88 ~~el~~~l~~~~~vlIDVRs~~Ey~~ghIPGA--inIP~~~~~~~~~vgtlyk~~~~~~~~a~~~g~~~~~~~~~f~~~~ 165 (289)
++++..+.+.+=..|||+|++.|......+|- .++|+.+... +......++.+.+
T Consensus 25 ~~~~~~L~~~gi~~Vi~l~~~~~~~~~~~~~~~~~~~~~~d~~~-----------------------~~~~~~~~~~~~i 81 (150)
T 4erc_A 25 PAHYQFLLDLGVRHLVSLTERGPPHSDSCPGLTLHRLRIPDFCP-----------------------PAPDQIDRFVQIV 81 (150)
T ss_dssp HHHHHHHHHTTEEEEEECSSSCCTTGGGCTTSEEEECCCCTTSC-----------------------CCHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCCEEEEcCCCCCCcccccCCceEEEEecCCCCC-----------------------CCHHHHHHHHHHH
Confidence 44443333333458999999766544444443 3455543211 1111123333333
Q ss_pred HhcCCCCCcEEEEcCCCC-chHHHH--HHHHHccCC
Q 022972 166 EEKLPKDTDLIVACQKGL-RSLAAC--ELLYNAGYR 198 (289)
Q Consensus 166 ~~~l~k~~~IVvyC~~G~-RS~~aa--~~L~~~G~~ 198 (289)
.+...++.+|+|+|..|. ||..++ ..+...|.+
T Consensus 82 ~~~~~~~~~vlVHC~~G~~Rsg~~~a~~l~~~~~~~ 117 (150)
T 4erc_A 82 DEANARGEAVGVHCALGFGRTGTMLACYLVKERGLA 117 (150)
T ss_dssp HHHHHTTCEEEEECSSSSHHHHHHHHHHHHHHHTCC
T ss_pred HHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHcCCC
Confidence 333346679999998777 877433 344546764
No 67
>3rgo_A Protein-tyrosine phosphatase mitochondrial 1; phosphatidylglycerol phosphate (PGP) phosphatase, hydrolase; 1.93A {Mus musculus} PDB: 3rgq_A*
Probab=93.27 E-value=0.15 Score=40.80 Aligned_cols=29 Identities=21% Similarity=0.296 Sum_probs=20.7
Q ss_pred CCCCcEEEEcCCCC-chHHH--HHHHHHccCC
Q 022972 170 PKDTDLIVACQKGL-RSLAA--CELLYNAGYR 198 (289)
Q Consensus 170 ~k~~~IVvyC~~G~-RS~~a--a~~L~~~G~~ 198 (289)
..+.+|+|+|..|. ||..+ +..+...|.+
T Consensus 87 ~~~~~vlVHC~~G~~Rsg~~~~a~l~~~~~~~ 118 (157)
T 3rgo_A 87 ALGQCVYVHCKAGRSRSATMVAAYLIQVHNWS 118 (157)
T ss_dssp HTTCEEEEESSSSSSHHHHHHHHHHHHHHTCC
T ss_pred HCCCEEEEECCCCCChHHHHHHHHHHHHcCCC
Confidence 45679999998777 87765 4455556764
No 68
>2img_A Dual specificity protein phosphatase 23; DUSP23, VHZ, LDP-3, dual specicity protein phosphatase 23, DUS23_human, malate, structural genomics, PSI; 1.93A {Homo sapiens}
Probab=92.94 E-value=0.2 Score=39.58 Aligned_cols=78 Identities=17% Similarity=0.212 Sum_probs=41.2
Q ss_pred CCcEEEEeCChhhhhhccCCC--cEeeCCCCCcccccCCCCCccccccccCCccCCCCCCcccHHHHHHHHhcCCCCCcE
Q 022972 98 SSKTLLDVRPSTERKKAWIKG--SIWIPIFDIDDTFDAGSLPQKVTNFVMGGWWSGVPTLSYNKQFLSKVEEKLPKDTDL 175 (289)
Q Consensus 98 ~~~vlIDVRs~~Ey~~ghIPG--AinIP~~~~~~~~~vgtlyk~~~~~~~~a~~~g~~~~~~~~~f~~~~~~~l~k~~~I 175 (289)
+=..|||+|++.|+.....++ -.++|+.+.. .+......++.+.+.+.+..+.+|
T Consensus 36 gi~~Vv~l~~~~e~~~~~~~~~~~~~~~~~d~~-----------------------~p~~~~~~~~~~~i~~~~~~~~~v 92 (151)
T 2img_A 36 GVRHLVSLTERGPPHSDSCPGLTLHRLRIPDFC-----------------------PPAPDQIDRFVQIVDEANARGEAV 92 (151)
T ss_dssp TEEEEEECSSSCCTTGGGCTTSEEEECCCCTTC-----------------------CCCHHHHHHHHHHHHHHHHTTCEE
T ss_pred CCCEEEECCCCCCCCHHHHhhCCeEEEeCCCCC-----------------------CCCHHHHHHHHHHHHHHHhCCCcE
Confidence 335899999886665433333 3445543311 011111223444443333457899
Q ss_pred EEEcCCCC-chHHHHH-H-HHHccCC
Q 022972 176 IVACQKGL-RSLAACE-L-LYNAGYR 198 (289)
Q Consensus 176 VvyC~~G~-RS~~aa~-~-L~~~G~~ 198 (289)
+|+|..|. ||..++. . +...|.+
T Consensus 93 lVHC~aG~~Rsg~~~~~~l~~~~~~~ 118 (151)
T 2img_A 93 GVHCALGFGRTGTMLACYLVKERGLA 118 (151)
T ss_dssp EEECSSSSSHHHHHHHHHHHHHHCCC
T ss_pred EEECCCCCChHHHHHHHHHHHHhCcC
Confidence 99998765 8765543 3 3333653
No 69
>2nt2_A Protein phosphatase slingshot homolog 2; alpha/beta hydrolase; 2.10A {Homo sapiens}
Probab=91.53 E-value=0.28 Score=38.98 Aligned_cols=29 Identities=17% Similarity=0.274 Sum_probs=20.9
Q ss_pred CCCCcEEEEcCCC-CchHH--HHHHHHHccCC
Q 022972 170 PKDTDLIVACQKG-LRSLA--ACELLYNAGYR 198 (289)
Q Consensus 170 ~k~~~IVvyC~~G-~RS~~--aa~~L~~~G~~ 198 (289)
..+.+|+|+|..| .||.. +++.+...|++
T Consensus 79 ~~~~~VlVHC~~G~~RS~~~v~ayLm~~~~~~ 110 (145)
T 2nt2_A 79 KHGSKCLVHSKMGVSRSASTVIAYAMKEYGWN 110 (145)
T ss_dssp HTTCEEEEECSSSSSHHHHHHHHHHHHHHCCC
T ss_pred HcCCeEEEECCCCCchHHHHHHHHHHHHhCCC
Confidence 3567999999877 58865 35666667763
No 70
>2hcm_A Dual specificity protein phosphatase; structural genomics, PSI, protein structure INI NEW YORK SGX research center for structural genomics; 2.00A {Mus musculus}
Probab=91.37 E-value=0.26 Score=40.16 Aligned_cols=29 Identities=28% Similarity=0.410 Sum_probs=21.1
Q ss_pred CCCCcEEEEcCCCC-chHHH--HHHHHHccCC
Q 022972 170 PKDTDLIVACQKGL-RSLAA--CELLYNAGYR 198 (289)
Q Consensus 170 ~k~~~IVvyC~~G~-RS~~a--a~~L~~~G~~ 198 (289)
..+.+|+|+|..|. ||..+ +.++...|++
T Consensus 87 ~~~~~VlVHC~aG~~RSg~~~~ayLm~~~~~~ 118 (164)
T 2hcm_A 87 RDGGSCLVYCKNGRSRSAAVCTAYLMRHRGHS 118 (164)
T ss_dssp HTTCEEEEEESSSSHHHHHHHHHHHHHHSCCC
T ss_pred HcCCEEEEECCCCCchHHHHHHHHHHHHhCCC
Confidence 35679999998885 87754 4667677764
No 71
>1v8c_A MOAD related protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, protein binding; 1.60A {Thermus thermophilus} SCOP: d.15.3.1 d.129.5.1
Probab=90.97 E-value=0.043 Score=46.16 Aligned_cols=27 Identities=22% Similarity=0.338 Sum_probs=23.6
Q ss_pred cEEEEeCChhhhhhccCCCcEeeCCCCCccc
Q 022972 100 KTLLDVRPSTERKKAWIKGSIWIPIFDIDDT 130 (289)
Q Consensus 100 ~vlIDVRs~~Ey~~ghIPGAinIP~~~~~~~ 130 (289)
.++||||.+.||+ |||+|||...++-+
T Consensus 122 ~~liDvRe~~E~~----pgA~~iprg~lE~~ 148 (168)
T 1v8c_A 122 GAVVRFREVEPLK----VGSLSIPQLRVEVE 148 (168)
T ss_dssp TEEEEEEEEEEEE----ETTEEEEEEEEEEE
T ss_pred eEEEECCChhhcC----CCCEEcChhHHHHh
Confidence 4899999999999 99999998776543
No 72
>1yz4_A DUSP15, dual specificity phosphatase-like 15 isoform A; hydrolase; HET: BOG; 2.40A {Homo sapiens}
Probab=90.63 E-value=0.46 Score=38.41 Aligned_cols=29 Identities=17% Similarity=0.176 Sum_probs=20.5
Q ss_pred CCCCcEEEEcCCC-CchHHH--HHHHHHccCC
Q 022972 170 PKDTDLIVACQKG-LRSLAA--CELLYNAGYR 198 (289)
Q Consensus 170 ~k~~~IVvyC~~G-~RS~~a--a~~L~~~G~~ 198 (289)
..+.+|+|+|..| .||..+ +..+...|.+
T Consensus 82 ~~~~~VlVHC~aG~~RSg~~~~aylm~~~~~~ 113 (160)
T 1yz4_A 82 LNGGNCLVHSFAGISRSTTIVTAYVMTVTGLG 113 (160)
T ss_dssp HTTCCEEEEETTSSSHHHHHHHHHHHHHHCCC
T ss_pred HcCCeEEEECCCCCchHHHHHHHHHHHHcCCC
Confidence 3567999999877 587743 4555666764
No 73
>2r0b_A Serine/threonine/tyrosine-interacting protein; structural genomics, phosphatase, PSI-2, protein structure initiative; 1.60A {Homo sapiens}
Probab=90.26 E-value=0.9 Score=36.22 Aligned_cols=36 Identities=19% Similarity=0.268 Sum_probs=23.4
Q ss_pred HHHHHHHhcCCCCCcEEEEcCCC-CchHHH--HHHHHHccCC
Q 022972 160 QFLSKVEEKLPKDTDLIVACQKG-LRSLAA--CELLYNAGYR 198 (289)
Q Consensus 160 ~f~~~~~~~l~k~~~IVvyC~~G-~RS~~a--a~~L~~~G~~ 198 (289)
+|+.+.. ..+.+|+|+|..| .||..+ +..+...|.+
T Consensus 81 ~~i~~~~---~~~~~vlvHC~aG~~RS~~~~~ayl~~~~~~~ 119 (154)
T 2r0b_A 81 EFIDGSL---QMGGKVLVHGNAGISRSAAFVIAYIMETFGMK 119 (154)
T ss_dssp HHHHHHH---HTTCCEEEECSSSSSHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHH---hcCCCEEEEcCCCCChHHHHHHHHHHHHcCCC
Confidence 4444433 3567999999877 587753 4555567764
No 74
>3ezz_A Dual specificity protein phosphatase 4; alpha/beta, hydrolase, nucleus; 2.90A {Homo sapiens} SCOP: c.45.1.1 PDB: 1m3g_A
Probab=90.22 E-value=0.58 Score=36.98 Aligned_cols=29 Identities=24% Similarity=0.304 Sum_probs=20.1
Q ss_pred CCCCcEEEEcCCCC-chHH--HHHHHHHccCC
Q 022972 170 PKDTDLIVACQKGL-RSLA--ACELLYNAGYR 198 (289)
Q Consensus 170 ~k~~~IVvyC~~G~-RS~~--aa~~L~~~G~~ 198 (289)
.++.+|+|+|..|. ||.. ++..+...|++
T Consensus 79 ~~~~~VlVHC~~G~~RS~~~~~aylm~~~~~~ 110 (144)
T 3ezz_A 79 DCRGRVLVHSQAGISRSATICLAYLMMKKRVR 110 (144)
T ss_dssp HTTCCEEEEESSSSSHHHHHHHHHHHHHHTCC
T ss_pred hcCCeEEEECCCCCChhHHHHHHHHHHHcCCC
Confidence 45679999998776 8764 34555667764
No 75
>3f81_A Dual specificity protein phosphatase 3; hydrolase, protein dual-specificity phosphatase, inhibitor; HET: STT; 1.90A {Homo sapiens} SCOP: c.45.1.1 PDB: 1vhr_A* 1j4x_A*
Probab=89.24 E-value=0.67 Score=38.20 Aligned_cols=27 Identities=22% Similarity=0.447 Sum_probs=19.5
Q ss_pred CCcEEEEcCCCC-chHH--HHHHHHHccCC
Q 022972 172 DTDLIVACQKGL-RSLA--ACELLYNAGYR 198 (289)
Q Consensus 172 ~~~IVvyC~~G~-RS~~--aa~~L~~~G~~ 198 (289)
+.+|+|+|..|. ||.. ++..+...|++
T Consensus 115 ~~~VlVHC~~G~~RSg~~v~ayLm~~~~~~ 144 (183)
T 3f81_A 115 NGRVLVHCREGYSRSPTLVIAYLMMRQKMD 144 (183)
T ss_dssp TCCEEEECSSSSSHHHHHHHHHHHHHHCCC
T ss_pred CCeEEEECCCCcchHHHHHHHHHHHHhCCC
Confidence 679999998776 8776 34455667764
No 76
>2e0t_A Dual specificity phosphatase 26; conserved hypothetical protein, structural genomics, NPPSFA, project on protein structural and functional analyses; 1.67A {Homo sapiens}
Probab=88.99 E-value=0.48 Score=37.75 Aligned_cols=28 Identities=21% Similarity=0.370 Sum_probs=20.2
Q ss_pred CCCcEEEEcCCCC-chHH--HHHHHHHccCC
Q 022972 171 KDTDLIVACQKGL-RSLA--ACELLYNAGYR 198 (289)
Q Consensus 171 k~~~IVvyC~~G~-RS~~--aa~~L~~~G~~ 198 (289)
.+.+|+|+|..|. ||.. ++..+...|++
T Consensus 84 ~~~~vlVHC~aG~~RSg~~~~ayl~~~~~~~ 114 (151)
T 2e0t_A 84 PGGKILVHCAVGVSRSATLVLAYLMLYHHLT 114 (151)
T ss_dssp TTCCEEEECSSSSHHHHHHHHHHHHHHSCCC
T ss_pred CCCcEEEECCCCCChHHHHHHHHHHHHcCCC
Confidence 5679999998884 8774 34566667764
No 77
>1wrm_A Dual specificity phosphatase 22; DSP, JNK, hydrolase; HET: MES; 1.50A {Homo sapiens}
Probab=88.76 E-value=0.65 Score=37.83 Aligned_cols=29 Identities=17% Similarity=0.358 Sum_probs=19.8
Q ss_pred CCCCcEEEEcCCC-CchHHH--HHHHHHccCC
Q 022972 170 PKDTDLIVACQKG-LRSLAA--CELLYNAGYR 198 (289)
Q Consensus 170 ~k~~~IVvyC~~G-~RS~~a--a~~L~~~G~~ 198 (289)
.++.+|+|+|..| .||..+ +..+...|++
T Consensus 81 ~~~~~VlVHC~aG~~RSg~~~~ayLm~~~~~~ 112 (165)
T 1wrm_A 81 LRGESCLVHCLAGVSRSVTLVIAYIMTVTDFG 112 (165)
T ss_dssp HTTCEEEEECSSSSSHHHHHHHHHHHHTSSCC
T ss_pred HCCCeEEEECCCCCChhHHHHHHHHHHHcCCC
Confidence 3567999999877 588764 4455555653
No 78
>1xri_A AT1G05000; structural genomics, protein structure initiative, CESG for eukaryotic structural genomics, phosphoprote phosphatase; 3.30A {Arabidopsis thaliana} SCOP: c.45.1.1 PDB: 2q47_A
Probab=88.74 E-value=0.65 Score=36.92 Aligned_cols=28 Identities=18% Similarity=0.348 Sum_probs=19.4
Q ss_pred CCCcEEEEcCCCC-chHHHHH-HHHHccCC
Q 022972 171 KDTDLIVACQKGL-RSLAACE-LLYNAGYR 198 (289)
Q Consensus 171 k~~~IVvyC~~G~-RS~~aa~-~L~~~G~~ 198 (289)
++.+|+|+|..|. ||..++. +|...|.+
T Consensus 91 ~~~~vlvHC~aG~~RTg~~~a~~l~~~g~~ 120 (151)
T 1xri_A 91 KNHPVLIHCKRGKHRTGCLVGCLRKLQKWC 120 (151)
T ss_dssp GGCSEEEECSSSSSHHHHHHHHHHHHTTBC
T ss_pred CCCCEEEECCCCCCHHHHHHHHHHHHhCCC
Confidence 4679999998886 8776554 44445653
No 79
>1fpz_A Cyclin-dependent kinase inhibitor 3; alpha-beta sandwich, hydrolase; 2.00A {Homo sapiens} SCOP: c.45.1.1 PDB: 1fq1_A*
Probab=88.47 E-value=1.1 Score=37.91 Aligned_cols=39 Identities=18% Similarity=0.209 Sum_probs=22.9
Q ss_pred HHHHHHHhcCCCCCcEEEEcCCCC-chHHHH-HHHHHc--cCC
Q 022972 160 QFLSKVEEKLPKDTDLIVACQKGL-RSLAAC-ELLYNA--GYR 198 (289)
Q Consensus 160 ~f~~~~~~~l~k~~~IVvyC~~G~-RS~~aa-~~L~~~--G~~ 198 (289)
++++.+...+..+.+|+|+|..|. |+..++ ..|... |.+
T Consensus 121 ~~~~~i~~~~~~~~~VlVHC~aG~gRTg~~~a~~L~~~~~g~~ 163 (212)
T 1fpz_A 121 EIMEELTTCLKNYRKTLIHSYGGLGRSCLVAACLLLYLSDTIS 163 (212)
T ss_dssp HHHHHHHHHHHTTCCEEEECSSSSSHHHHHHHHHHHHHCSSCC
T ss_pred HHHHHHHHHHhCCCCEEEECCCCCCHHHHHHHHHHHHhccCCC
Confidence 444444433346779999998776 776554 334433 553
No 80
>1zzw_A Dual specificity protein phosphatase 10; MKP, PTP, hydrolase; 1.60A {Homo sapiens}
Probab=87.60 E-value=0.97 Score=35.86 Aligned_cols=29 Identities=24% Similarity=0.382 Sum_probs=20.4
Q ss_pred CCCCcEEEEcCCC-CchHHH--HHHHHHccCC
Q 022972 170 PKDTDLIVACQKG-LRSLAA--CELLYNAGYR 198 (289)
Q Consensus 170 ~k~~~IVvyC~~G-~RS~~a--a~~L~~~G~~ 198 (289)
..+.+|+|+|..| .||..+ ++.+...|.+
T Consensus 81 ~~~~~VlVHC~~G~~RSg~~~~ayl~~~~~~~ 112 (149)
T 1zzw_A 81 QCGKGLLIHCQAGVSRSATIVIAYLMKHTRMT 112 (149)
T ss_dssp HTTCEEEEECSSSSSHHHHHHHHHHHHHSCCC
T ss_pred HcCCeEEEECCCCCCHHHHHHHHHHHHHcCCC
Confidence 3567999999877 587764 4555566763
No 81
>2esb_A Dual specificity protein phosphatase 18; alpha/beta structure, hydrolase; HET: EPE; 2.00A {Homo sapiens}
Probab=87.51 E-value=1 Score=37.68 Aligned_cols=29 Identities=24% Similarity=0.295 Sum_probs=21.1
Q ss_pred CCCCcEEEEcCCC-CchHH--HHHHHHHccCC
Q 022972 170 PKDTDLIVACQKG-LRSLA--ACELLYNAGYR 198 (289)
Q Consensus 170 ~k~~~IVvyC~~G-~RS~~--aa~~L~~~G~~ 198 (289)
..+.+|+|+|..| .||.. ++.++...|++
T Consensus 95 ~~~~~VLVHC~aG~sRS~~vv~ayLm~~~~~s 126 (188)
T 2esb_A 95 MKQGRTLLHCAAGVSRSAALCLAYLMKYHAMS 126 (188)
T ss_dssp HTTCCEEEECSSSSSHHHHHHHHHHHHHSCCC
T ss_pred HcCCEEEEECCCCCchHHHHHHHHHHHHcCCC
Confidence 3567999999877 58775 35666667764
No 82
>3s4e_A Dual specificity protein phosphatase 19; PTP, protein tyrosine phosphatase, hydrolase; 1.26A {Homo sapiens}
Probab=87.08 E-value=1.1 Score=35.46 Aligned_cols=29 Identities=24% Similarity=0.260 Sum_probs=20.4
Q ss_pred CCCCcEEEEcCCCC-chHH--HHHHHHHccCC
Q 022972 170 PKDTDLIVACQKGL-RSLA--ACELLYNAGYR 198 (289)
Q Consensus 170 ~k~~~IVvyC~~G~-RS~~--aa~~L~~~G~~ 198 (289)
.++.+|+|+|..|. ||.. ++.++...|++
T Consensus 79 ~~~~~VlVHC~~G~sRS~~~v~ayLm~~~~~~ 110 (144)
T 3s4e_A 79 RKDGVVLVHSNAGVSRAAAIVIGFLMNSEQTS 110 (144)
T ss_dssp HTTCCEEEECSSSSSHHHHHHHHHHHHHHCCC
T ss_pred HcCCeEEEEcCCCCchHHHHHHHHHHHHcCCC
Confidence 45679999998776 7665 34566667764
No 83
>1ywf_A Phosphotyrosine protein phosphatase PTPB; four stranded parallel beta sheet with flanking helices, structural genomics, PSI; 1.71A {Mycobacterium tuberculosis} SCOP: c.45.1.5 PDB: 2oz5_A*
Probab=87.03 E-value=0.45 Score=43.22 Aligned_cols=54 Identities=20% Similarity=0.230 Sum_probs=33.1
Q ss_pred HHHhhhCCCcceeCHHHHHHhhcCCCcEEEEeCChhhhhhc----cCCCc--EeeCCCCC
Q 022972 74 WDALIRDGKVKVLTPREAGYAVQLSSKTLLDVRPSTERKKA----WIKGS--IWIPIFDI 127 (289)
Q Consensus 74 ~~~~~~~~~~~~Is~~el~~~l~~~~~vlIDVRs~~Ey~~g----hIPGA--inIP~~~~ 127 (289)
|..+-+.+....++++++..+.+.+=..|||.|++.|.... ..+|. +|+|+...
T Consensus 44 ~G~lyRS~~l~~lt~~d~~~L~~lGI~tVIDLR~~~E~~~~~pd~~~~Gi~~~~iPi~~~ 103 (296)
T 1ywf_A 44 PGRLFRSSELSRLDDAGRATLRRLGITDVADLRSSREVARRGPGRVPDGIDVHLLPFPDL 103 (296)
T ss_dssp TTSEEEESCCTTCCHHHHHHHHHHTCCEEEECCCHHHHHHHCSCCCCTTCEEEECCCCCS
T ss_pred CcceeccCCcccCCHHHHHHHHhCCCCEEEECcChhhhhccCCCCCCCCCEEEEecCccc
Confidence 33333445556678888766544344589999999886533 23454 56676653
No 84
>2wgp_A Dual specificity protein phosphatase 14; MKP6, DUSP14, hydrolase, dual specifici phosphatase; 1.88A {Homo sapiens}
Probab=85.75 E-value=1.3 Score=37.19 Aligned_cols=29 Identities=24% Similarity=0.250 Sum_probs=20.8
Q ss_pred CCCCcEEEEcCCC-CchHHH--HHHHHHccCC
Q 022972 170 PKDTDLIVACQKG-LRSLAA--CELLYNAGYR 198 (289)
Q Consensus 170 ~k~~~IVvyC~~G-~RS~~a--a~~L~~~G~~ 198 (289)
..+.+|+|+|..| .||..+ ++++...|++
T Consensus 101 ~~~~~VlVHC~aG~~RSgtvv~ayLm~~~~~s 132 (190)
T 2wgp_A 101 RKHGATLVHCAAGVSRSATLCIAYLMKFHNVC 132 (190)
T ss_dssp HTTCCEEEECSSSSSHHHHHHHHHHHHHHCCC
T ss_pred hcCCCEEEECCCCCCHHHHHHHHHHHHHcCCC
Confidence 3567999999877 587743 5667767764
No 85
>3s4o_A Protein tyrosine phosphatase-like protein; structural genomics, medical structural genomics of pathogen protozoa, MSGPP, unknown function; HET: MSE EPE; 2.30A {Leishmania major}
Probab=84.53 E-value=2.6 Score=33.49 Aligned_cols=28 Identities=21% Similarity=0.250 Sum_probs=17.7
Q ss_pred CCCcEEEEcCCCC-chHHHHH-HHHHc-cCC
Q 022972 171 KDTDLIVACQKGL-RSLAACE-LLYNA-GYR 198 (289)
Q Consensus 171 k~~~IVvyC~~G~-RS~~aa~-~L~~~-G~~ 198 (289)
++.+|+|+|..|. ||..++. .|... |.+
T Consensus 108 ~~~~vlVHC~aG~~RTg~~~a~~L~~~~~~~ 138 (167)
T 3s4o_A 108 PPPTIGVHCVAGLGRAPILVALALVEYGNVS 138 (167)
T ss_dssp CCCEEEEECSSSSSHHHHHHHHHHHHTTCCC
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHHHhCCCC
Confidence 3679999998665 7765443 34333 553
No 86
>2pq5_A Dual specificity protein phosphatase 13; hydrolase, dual specificity phosphatase, DUSP13, testis and skeletal muscle specific DSP; 2.30A {Homo sapiens} PDB: 2gwo_A
Probab=84.02 E-value=3.1 Score=35.14 Aligned_cols=28 Identities=21% Similarity=0.322 Sum_probs=19.9
Q ss_pred CCCcEEEEcCCC-CchHHH--HHHHHHccCC
Q 022972 171 KDTDLIVACQKG-LRSLAA--CELLYNAGYR 198 (289)
Q Consensus 171 k~~~IVvyC~~G-~RS~~a--a~~L~~~G~~ 198 (289)
++.+|+|+|..| .||..+ ++++...|++
T Consensus 130 ~~~~VLVHC~aG~sRS~tvv~aYLm~~~~~s 160 (205)
T 2pq5_A 130 PQGRVLVHCAMGVSRSATLVLAFLMIYENMT 160 (205)
T ss_dssp TTCCEEEECSSSSSHHHHHHHHHHHHHSCCC
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHHcCCC
Confidence 567999999877 487754 4566666763
No 87
>2g6z_A Dual specificity protein phosphatase 5; alpha/beta, hydrolase; 2.70A {Homo sapiens}
Probab=83.62 E-value=1.9 Score=37.10 Aligned_cols=29 Identities=24% Similarity=0.360 Sum_probs=20.9
Q ss_pred CCCCcEEEEcCCC-CchHH--HHHHHHHccCC
Q 022972 170 PKDTDLIVACQKG-LRSLA--ACELLYNAGYR 198 (289)
Q Consensus 170 ~k~~~IVvyC~~G-~RS~~--aa~~L~~~G~~ 198 (289)
..+.+|+|+|..| .||.. ++++++..|++
T Consensus 81 ~~~~~VLVHC~aG~sRSgtvv~AYLm~~~g~s 112 (211)
T 2g6z_A 81 EKGGKVLVHSEAGISRSPTICMAYLMKTKQFR 112 (211)
T ss_dssp HTTCCEEEEESSSSSHHHHHHHHHHHHHHCCC
T ss_pred hcCCeEEEECCCCCCcHHHHHHHHHHHHcCCC
Confidence 4567999999877 48764 45667767764
No 88
>3rz2_A Protein tyrosine phosphatase type IVA 1; tyrosine phosphatase, dual specific phosphatase, COMP with peptide, hydrolase; 2.80A {Rattus norvegicus} PDB: 1x24_A 1zcl_A
Probab=83.26 E-value=3.6 Score=34.05 Aligned_cols=88 Identities=23% Similarity=0.182 Sum_probs=45.3
Q ss_pred eCHHHHHHhhcCCC-cEEEEeCChhh----hhhccCCCcEeeCCCCCcccccCCCCCccccccccCCccCCCCCCcccHH
Q 022972 86 LTPREAGYAVQLSS-KTLLDVRPSTE----RKKAWIKGSIWIPIFDIDDTFDAGSLPQKVTNFVMGGWWSGVPTLSYNKQ 160 (289)
Q Consensus 86 Is~~el~~~l~~~~-~vlIDVRs~~E----y~~ghIPGAinIP~~~~~~~~~vgtlyk~~~~~~~~a~~~g~~~~~~~~~ 160 (289)
-+.++..+.+.+.+ ..|||++++.+ +...+|. -.++|+.+... +......+
T Consensus 48 ~t~~~~~~~L~~~gi~~Iv~l~~~~~~~~~~~~~~i~-~~~~pi~d~~~-----------------------~~~~~~~~ 103 (189)
T 3rz2_A 48 ATLNKFIEELKKYGVTTIVRVCEATYDTTLVEKEGIH-VLDWPFDDGAP-----------------------PSNQIVDD 103 (189)
T ss_dssp TTHHHHHHHHHTTTEEEEEECSCCCSCCHHHHHSSCE-EEECCCCSSSC-----------------------CCSHHHHH
T ss_pred ccHHHHHHHHHHcCCcEEEEeCCCcCCHHHHHHcCcE-EEEecCCCCCC-----------------------CCHHHHHH
Confidence 45666666665544 47999997532 2222221 33455432110 11112234
Q ss_pred HHHHHHhc--CCCCCcEEEEcCCCC-chHHHHH-HHHHccC
Q 022972 161 FLSKVEEK--LPKDTDLIVACQKGL-RSLAACE-LLYNAGY 197 (289)
Q Consensus 161 f~~~~~~~--l~k~~~IVvyC~~G~-RS~~aa~-~L~~~G~ 197 (289)
+++.+.+. ..++.+|+|.|..|. ||..++. .|...|+
T Consensus 104 ~~~~i~~~~~~~~~~~VlVHC~aG~gRSg~~va~~L~~~g~ 144 (189)
T 3rz2_A 104 WLSLVKIKFREEPGCCIAVHCVAGLGRAPVLVALALIEGGM 144 (189)
T ss_dssp HHHHHHHHHHHSTTCEEEEECSSSSTTHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHhCCCCcEEEECCCCCCHHHHHHHHHHHHcCC
Confidence 44444332 256679999998665 8765443 3334454
No 89
>2q05_A Late protein H1, dual specificity protein phosphatase; structural genomics, APC7320, P protein structure initiative; HET: MSE; 2.57A {Vaccinia virus WR}
Probab=81.25 E-value=2.2 Score=35.86 Aligned_cols=29 Identities=24% Similarity=0.316 Sum_probs=19.0
Q ss_pred CCCCcEEEEcCCC-CchHHHH--HHHHHccCC
Q 022972 170 PKDTDLIVACQKG-LRSLAAC--ELLYNAGYR 198 (289)
Q Consensus 170 ~k~~~IVvyC~~G-~RS~~aa--~~L~~~G~~ 198 (289)
..+.+|+|+|..| .||..++ ..+...|.+
T Consensus 123 ~~~~~VlVHC~aG~~RSg~~v~~yL~~~~~~~ 154 (195)
T 2q05_A 123 QRNEPVLVHCAAGVNRSGAMILAYLMSKNKES 154 (195)
T ss_dssp HTTCCEEEECSSSSSHHHHHHHHHHHHHCCSS
T ss_pred HcCCcEEEEcCCCCChHHHHHHHHHHHHhCCC
Confidence 3567999999877 5876544 344445654
No 90
>2y96_A Dual specificity phosphatase DUPD1; hydrolase; 2.38A {Homo sapiens}
Probab=81.03 E-value=4.7 Score=34.57 Aligned_cols=29 Identities=21% Similarity=0.379 Sum_probs=20.5
Q ss_pred CCCCcEEEEcCCCC-chHH--HHHHHHHccCC
Q 022972 170 PKDTDLIVACQKGL-RSLA--ACELLYNAGYR 198 (289)
Q Consensus 170 ~k~~~IVvyC~~G~-RS~~--aa~~L~~~G~~ 198 (289)
..+.+|+|+|..|. ||.. ++++|...|++
T Consensus 137 ~~~~~VLVHC~aG~sRS~tvv~aYLm~~~~~s 168 (219)
T 2y96_A 137 DDHSKILVHCVMGRSRSATLVLAYLMIHKDMT 168 (219)
T ss_dssp STTCCEEEECSSSSSHHHHHHHHHHHHHSCCC
T ss_pred ccCCeEEEECCCCCCHHHHHHHHHHHHHcCCC
Confidence 45679999998774 8775 34566666763
No 91
>2oud_A Dual specificity protein phosphatase 10; A central five-stranded B-sheet, hydrolase; 2.80A {Homo sapiens}
Probab=80.96 E-value=2.4 Score=34.85 Aligned_cols=29 Identities=24% Similarity=0.382 Sum_probs=20.0
Q ss_pred CCCCcEEEEcCCC-CchHHH--HHHHHHccCC
Q 022972 170 PKDTDLIVACQKG-LRSLAA--CELLYNAGYR 198 (289)
Q Consensus 170 ~k~~~IVvyC~~G-~RS~~a--a~~L~~~G~~ 198 (289)
..+.+|+|+|..| .||..+ ++.+...|++
T Consensus 85 ~~~~~VlVHC~aG~~RSg~~v~ayLm~~~~~~ 116 (177)
T 2oud_A 85 QCGKGLLIHCQAGVSRSATIVIAYLMKHTRMT 116 (177)
T ss_dssp HTTCEEEEECSSSSSHHHHHHHHHHHHTSCCC
T ss_pred hcCCcEEEEcCCCCCchHHHHHHHHHHHcCCC
Confidence 3567999999877 587764 3455556663
No 92
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=79.31 E-value=0.47 Score=37.80 Aligned_cols=26 Identities=12% Similarity=0.055 Sum_probs=21.8
Q ss_pred cccccccccccchhhhhcccchhcCCC
Q 022972 225 FAGIGGLSEFLGYTSQLCYPFLHISYP 251 (289)
Q Consensus 225 ~~~~~G~t~~~Gkt~~l~~l~~~~g~~ 251 (289)
..++.|.+ |+|||++.+.|+++.||+
T Consensus 3 ~i~l~G~~-GsGKsT~~~~L~~~l~~~ 28 (173)
T 3kb2_A 3 LIILEGPD-CCFKSTVAAKLSKELKYP 28 (173)
T ss_dssp EEEEECSS-SSSHHHHHHHHHHHHCCC
T ss_pred EEEEECCC-CCCHHHHHHHHHHHhCCe
Confidence 56788998 499999999996666987
No 93
>3emu_A Leucine rich repeat and phosphatase domain containing protein; structural genomics, hydrolase, PSI-2, protein structure initiative; 2.30A {Entamoeba histolytica}
Probab=77.27 E-value=3.1 Score=33.70 Aligned_cols=29 Identities=14% Similarity=0.335 Sum_probs=20.6
Q ss_pred CCCCcEEEEcCCCC-chHH--HHHHHHHccCC
Q 022972 170 PKDTDLIVACQKGL-RSLA--ACELLYNAGYR 198 (289)
Q Consensus 170 ~k~~~IVvyC~~G~-RS~~--aa~~L~~~G~~ 198 (289)
..+.+|+|+|..|. ||.. +++++...|++
T Consensus 85 ~~~~~VlVHC~~G~sRS~~vv~ayLm~~~~~s 116 (161)
T 3emu_A 85 QRKEGVLIISGTGVNKAPAIVIAFLMYYQRLS 116 (161)
T ss_dssp HTTCEEEEEESSSSSHHHHHHHHHHHHHTTCC
T ss_pred hcCCeEEEEcCCCCcHHHHHHHHHHHHHhCCC
Confidence 35679999998776 7654 45666777764
No 94
>1rxd_A Protein tyrosine phosphatase type IVA, member 1; protein tyrosine phosphatase IVA1...; structural genomics, NYSGXRC, unknown function, PSI; 1.90A {Homo sapiens} SCOP: c.45.1.1 PDB: 1xm2_A 1zck_A 1r6h_A 1v3a_A
Probab=76.60 E-value=7.7 Score=30.34 Aligned_cols=28 Identities=25% Similarity=0.387 Sum_probs=18.3
Q ss_pred CCCCcEEEEcCCCC-chHHHHH-HHHHccC
Q 022972 170 PKDTDLIVACQKGL-RSLAACE-LLYNAGY 197 (289)
Q Consensus 170 ~k~~~IVvyC~~G~-RS~~aa~-~L~~~G~ 197 (289)
+++.+|+|+|..|. ||..++. .|...|.
T Consensus 94 ~~~~~vlVHC~aG~~Rtg~~~a~~l~~~~~ 123 (159)
T 1rxd_A 94 EPGCCIAVHCVAGLGRAPVLVALALIEGGM 123 (159)
T ss_dssp STTCEEEEECSSSSTTHHHHHHHHHHHTTC
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHhCC
Confidence 34679999998664 8776443 4444554
No 95
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=75.82 E-value=0.7 Score=37.57 Aligned_cols=27 Identities=19% Similarity=-0.171 Sum_probs=22.8
Q ss_pred ccccccccccccchhhhhcccchhcCCC
Q 022972 224 KFAGIGGLSEFLGYTSQLCYPFLHISYP 251 (289)
Q Consensus 224 ~~~~~~G~t~~~Gkt~~l~~l~~~~g~~ 251 (289)
+...+.|.+| +|||++.+.|+++.|++
T Consensus 6 ~~i~l~G~~G-sGKst~a~~La~~l~~~ 32 (185)
T 3trf_A 6 TNIYLIGLMG-AGKTSVGSQLAKLTKRI 32 (185)
T ss_dssp CEEEEECSTT-SSHHHHHHHHHHHHCCC
T ss_pred CEEEEECCCC-CCHHHHHHHHHHHhCCC
Confidence 4567889984 99999999997777997
No 96
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=75.39 E-value=0.76 Score=37.03 Aligned_cols=27 Identities=15% Similarity=0.105 Sum_probs=22.2
Q ss_pred ccccccccccccchhhhhcccchhcCCC
Q 022972 224 KFAGIGGLSEFLGYTSQLCYPFLHISYP 251 (289)
Q Consensus 224 ~~~~~~G~t~~~Gkt~~l~~l~~~~g~~ 251 (289)
....++|.+| +|||++.+.|+++.|.+
T Consensus 4 ~~i~l~G~~G-sGKST~a~~La~~l~~~ 30 (178)
T 1qhx_A 4 RMIILNGGSS-AGKSGIVRCLQSVLPEP 30 (178)
T ss_dssp CEEEEECCTT-SSHHHHHHHHHHHSSSC
T ss_pred eEEEEECCCC-CCHHHHHHHHHHhcCCC
Confidence 3568899995 99999999997766765
No 97
>3cm3_A Late protein H1, dual specificity protein phosphatase; dual-specificity phosphatase, VH1, hydrolase; 1.32A {Vaccinia virus} PDB: 2rf6_A 2p4d_A
Probab=74.89 E-value=4.6 Score=32.97 Aligned_cols=28 Identities=21% Similarity=0.214 Sum_probs=19.1
Q ss_pred CCCcEEEEcCCC-CchHHH--HHHHHHccCC
Q 022972 171 KDTDLIVACQKG-LRSLAA--CELLYNAGYR 198 (289)
Q Consensus 171 k~~~IVvyC~~G-~RS~~a--a~~L~~~G~~ 198 (289)
.+.+|+|+|..| .||..+ +..+...|.+
T Consensus 107 ~~~~VlVHC~aG~~RSg~~v~aylm~~~~~~ 137 (176)
T 3cm3_A 107 RNEPVLVHSAAGVNRSGAMILAYLMSKNKES 137 (176)
T ss_dssp HTCCEEEECSSSSSHHHHHHHHHHHHHCCSS
T ss_pred CCCcEEEECCcCCCHHHHHHHHHHHHHhCCC
Confidence 467999999876 587654 4555555654
No 98
>1yn9_A BVP, polynucleotide 5'-phosphatase; RNA triphosphatase, cysteine phosphatase, P-loop, hydrolase; HET: PO4; 1.50A {Autographa californicanucleopolyhedrovirus}
Probab=73.76 E-value=7.6 Score=31.25 Aligned_cols=28 Identities=21% Similarity=0.260 Sum_probs=18.1
Q ss_pred CCCcEEEEcCCCC-chHHHH--HHHHHccCC
Q 022972 171 KDTDLIVACQKGL-RSLAAC--ELLYNAGYR 198 (289)
Q Consensus 171 k~~~IVvyC~~G~-RS~~aa--~~L~~~G~~ 198 (289)
++.+|+|+|..|. ||..++ .++...|++
T Consensus 112 ~~~~vlVHC~aG~~RTg~~va~~L~~~~~~~ 142 (169)
T 1yn9_A 112 PGMLVGVHCTHGINRTGYMVCRYLMHTLGIA 142 (169)
T ss_dssp TTSEEEEECSSSSHHHHHHHHHHHHHHHCCC
T ss_pred CCCcEEEECCCCCChHHHHHHHHHHHHhCCC
Confidence 5679999998766 766433 333336763
No 99
>2i6j_A Ssoptp, sulfolobus solfataricus protein tyrosine phosphatase; PTP domain, hydrolase; 1.66A {Sulfolobus solfataricus} PDB: 2i6i_A 2i6m_A 3ro1_A* 2i6o_A* 2dxp_A* 2i6p_A*
Probab=73.55 E-value=7.7 Score=30.56 Aligned_cols=13 Identities=23% Similarity=0.148 Sum_probs=10.3
Q ss_pred cEEEEeCChhhhh
Q 022972 100 KTLLDVRPSTERK 112 (289)
Q Consensus 100 ~vlIDVRs~~Ey~ 112 (289)
..|||+|++.|..
T Consensus 30 ~~Vi~l~~~~e~~ 42 (161)
T 2i6j_A 30 KRVLVLPEDWEIE 42 (161)
T ss_dssp CEEEECSCHHHHH
T ss_pred CEEEEcCchhhhh
Confidence 4799999987654
No 100
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=73.41 E-value=0.91 Score=37.77 Aligned_cols=29 Identities=14% Similarity=-0.031 Sum_probs=24.5
Q ss_pred CCccccccccccccchhhhhcccchhcCCC
Q 022972 222 PLKFAGIGGLSEFLGYTSQLCYPFLHISYP 251 (289)
Q Consensus 222 ~~~~~~~~G~t~~~Gkt~~l~~l~~~~g~~ 251 (289)
+.+..++.|.+| +|||++.+.|+++.|++
T Consensus 24 ~~~~i~l~G~~G-sGKsTl~~~La~~l~~~ 52 (199)
T 3vaa_A 24 AMVRIFLTGYMG-AGKTTLGKAFARKLNVP 52 (199)
T ss_dssp CCCEEEEECCTT-SCHHHHHHHHHHHHTCC
T ss_pred CCCEEEEEcCCC-CCHHHHHHHHHHHcCCC
Confidence 445778999995 99999999997777996
No 101
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=72.39 E-value=1.1 Score=36.94 Aligned_cols=30 Identities=13% Similarity=-0.070 Sum_probs=24.4
Q ss_pred CCCccccccccccccchhhhhcccchhcCCC
Q 022972 221 QPLKFAGIGGLSEFLGYTSQLCYPFLHISYP 251 (289)
Q Consensus 221 ~~~~~~~~~G~t~~~Gkt~~l~~l~~~~g~~ 251 (289)
......++.|.. |+|||++.+.|+++.|++
T Consensus 13 ~~~~~I~l~G~~-GsGKsT~~~~L~~~~g~~ 42 (203)
T 1ukz_A 13 DQVSVIFVLGGP-GAGKGTQCEKLVKDYSFV 42 (203)
T ss_dssp TTCEEEEEECST-TSSHHHHHHHHHHHSSCE
T ss_pred CCCcEEEEECCC-CCCHHHHHHHHHHHcCce
Confidence 344678899999 499999999997777885
No 102
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=72.13 E-value=0.94 Score=36.33 Aligned_cols=28 Identities=14% Similarity=-0.041 Sum_probs=22.7
Q ss_pred CccccccccccccchhhhhcccchhcCCC
Q 022972 223 LKFAGIGGLSEFLGYTSQLCYPFLHISYP 251 (289)
Q Consensus 223 ~~~~~~~G~t~~~Gkt~~l~~l~~~~g~~ 251 (289)
....+++|.. |+|||++-+.|+++.|+|
T Consensus 7 ~~~i~l~G~~-GsGKSTva~~La~~lg~~ 34 (168)
T 1zuh_A 7 MQHLVLIGFM-GSGKSSLAQELGLALKLE 34 (168)
T ss_dssp -CEEEEESCT-TSSHHHHHHHHHHHHTCC
T ss_pred cceEEEECCC-CCCHHHHHHHHHHHhCCC
Confidence 4566888888 499999999996667997
No 103
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=71.27 E-value=0.98 Score=36.46 Aligned_cols=27 Identities=15% Similarity=-0.053 Sum_probs=19.4
Q ss_pred ccccccccccccchhhhhcccchhcCCC
Q 022972 224 KFAGIGGLSEFLGYTSQLCYPFLHISYP 251 (289)
Q Consensus 224 ~~~~~~G~t~~~Gkt~~l~~l~~~~g~~ 251 (289)
.+.+++|.. |+|||++.+.|+++.|++
T Consensus 6 ~~I~l~G~~-GsGKST~a~~La~~l~~~ 32 (183)
T 2vli_A 6 PIIWINGPF-GVGKTHTAHTLHERLPGS 32 (183)
T ss_dssp CEEEEECCC-----CHHHHHHHHHSTTC
T ss_pred eEEEEECCC-CCCHHHHHHHHHHhcCCC
Confidence 467889998 499999999996677986
No 104
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=71.16 E-value=0.97 Score=35.63 Aligned_cols=25 Identities=12% Similarity=-0.057 Sum_probs=22.0
Q ss_pred cccccccccccchhhhhcccchhcCCC
Q 022972 225 FAGIGGLSEFLGYTSQLCYPFLHISYP 251 (289)
Q Consensus 225 ~~~~~G~t~~~Gkt~~l~~l~~~~g~~ 251 (289)
+.++.|.+| +|||++.+.| ++.|++
T Consensus 3 ~I~l~G~~G-sGKsT~a~~L-~~~g~~ 27 (179)
T 3lw7_A 3 VILITGMPG-SGKSEFAKLL-KERGAK 27 (179)
T ss_dssp EEEEECCTT-SCHHHHHHHH-HHTTCE
T ss_pred EEEEECCCC-CCHHHHHHHH-HHCCCc
Confidence 567889994 9999999999 888996
No 105
>2j16_A SDP-1, tyrosine-protein phosphatase YIL113W; hydrolase, hypothetical protein; 2.7A {Saccharomyces cerevisiae} PDB: 2j17_A* 2j16_B
Probab=69.83 E-value=9.2 Score=31.87 Aligned_cols=29 Identities=21% Similarity=0.313 Sum_probs=20.4
Q ss_pred CCCCcEEEEcCCCC-chHH--HHHHHHHccCC
Q 022972 170 PKDTDLIVACQKGL-RSLA--ACELLYNAGYR 198 (289)
Q Consensus 170 ~k~~~IVvyC~~G~-RS~~--aa~~L~~~G~~ 198 (289)
.++.+|+|+|..|. ||.. +|+++...|++
T Consensus 115 ~~g~~VLVHC~~G~sRS~tvv~ayLm~~~~~s 146 (182)
T 2j16_A 115 TKREKILIHAQCGLSRSATLIIAYIMKYHNLS 146 (182)
T ss_dssp HTTCCEEEEESSCCSHHHHHHHHHHHHHTTCC
T ss_pred hcCCeEEEECCCCCChHHHHHHHHHHHHcCCC
Confidence 45779999998775 7765 45666666664
No 106
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=69.54 E-value=1.3 Score=36.24 Aligned_cols=27 Identities=22% Similarity=0.156 Sum_probs=22.1
Q ss_pred CccccccccccccchhhhhcccchhcCCC
Q 022972 223 LKFAGIGGLSEFLGYTSQLCYPFLHISYP 251 (289)
Q Consensus 223 ~~~~~~~G~t~~~Gkt~~l~~l~~~~g~~ 251 (289)
....+++|.+ |+|||++.+.|++. |++
T Consensus 8 ~~~I~i~G~~-GsGKST~~~~La~~-g~~ 34 (203)
T 1uf9_A 8 PIIIGITGNI-GSGKSTVAALLRSW-GYP 34 (203)
T ss_dssp CEEEEEEECT-TSCHHHHHHHHHHT-TCC
T ss_pred ceEEEEECCC-CCCHHHHHHHHHHC-CCE
Confidence 3567888998 49999999999555 987
No 107
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=68.58 E-value=1 Score=35.97 Aligned_cols=27 Identities=15% Similarity=-0.101 Sum_probs=22.0
Q ss_pred ccccccccccccchhhhhcccchhcCCC
Q 022972 224 KFAGIGGLSEFLGYTSQLCYPFLHISYP 251 (289)
Q Consensus 224 ~~~~~~G~t~~~Gkt~~l~~l~~~~g~~ 251 (289)
...+++|.. |+|||++.+.|++..|++
T Consensus 3 ~~I~l~G~~-GsGKsT~a~~La~~lg~~ 29 (173)
T 1e6c_A 3 EPIFMVGAR-GCGMTTVGRELARALGYE 29 (173)
T ss_dssp CCEEEESCT-TSSHHHHHHHHHHHHTCE
T ss_pred ceEEEECCC-CCCHHHHHHHHHHHhCCc
Confidence 356788888 499999999996656986
No 108
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=67.82 E-value=1.2 Score=35.58 Aligned_cols=27 Identities=7% Similarity=-0.129 Sum_probs=22.1
Q ss_pred ccccccccccccchhhhhcccchhcCCC
Q 022972 224 KFAGIGGLSEFLGYTSQLCYPFLHISYP 251 (289)
Q Consensus 224 ~~~~~~G~t~~~Gkt~~l~~l~~~~g~~ 251 (289)
...++.|.+| +|||++.+.|+...|++
T Consensus 5 ~~i~l~G~~G-sGKSTl~~~La~~l~~~ 31 (173)
T 1kag_A 5 RNIFLVGPMG-AGKSTIGRQLAQQLNME 31 (173)
T ss_dssp CCEEEECCTT-SCHHHHHHHHHHHTTCE
T ss_pred CeEEEECCCC-CCHHHHHHHHHHHhCCC
Confidence 3567889984 99999999996666875
No 109
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=67.77 E-value=5.9 Score=32.60 Aligned_cols=45 Identities=18% Similarity=0.224 Sum_probs=31.7
Q ss_pred HHHhcCCCCCcEEEEcCCCCchHHHHHHHHHccCCCeeEccccHHH
Q 022972 164 KVEEKLPKDTDLIVACQKGLRSLAACELLYNAGYRNLFWVQGGLEA 209 (289)
Q Consensus 164 ~~~~~l~k~~~IVvyC~~G~RS~~aa~~L~~~G~~nV~~L~GG~~a 209 (289)
++.....++.+++|||++-..+..++..|...|+. +..+.|++..
T Consensus 38 ~ll~~~~~~~k~lVF~~~~~~~~~l~~~L~~~g~~-~~~lhg~~~~ 82 (185)
T 2jgn_A 38 DLLNATGKDSLTLVFVETKKGADSLEDFLYHEGYA-CTSIHGDRSQ 82 (185)
T ss_dssp HHHHHC-CCSCEEEEESCHHHHHHHHHHHHHTTCC-EEEEC-----
T ss_pred HHHHhcCCCCeEEEEECCHHHHHHHHHHHHHcCCc-eEEEeCCCCH
Confidence 33334446678999999877888999999999995 8899998753
No 110
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=67.30 E-value=1.6 Score=35.48 Aligned_cols=28 Identities=14% Similarity=0.037 Sum_probs=23.2
Q ss_pred CccccccccccccchhhhhcccchhcCCC
Q 022972 223 LKFAGIGGLSEFLGYTSQLCYPFLHISYP 251 (289)
Q Consensus 223 ~~~~~~~G~t~~~Gkt~~l~~l~~~~g~~ 251 (289)
..+..+.|..| +|||++.+.|+++.|++
T Consensus 5 ~~~I~l~G~~G-sGKST~~~~L~~~l~~~ 32 (193)
T 2rhm_A 5 PALIIVTGHPA-TGKTTLSQALATGLRLP 32 (193)
T ss_dssp CEEEEEEESTT-SSHHHHHHHHHHHHTCC
T ss_pred CeEEEEECCCC-CCHHHHHHHHHHHcCCe
Confidence 35678899994 99999999996666886
No 111
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=67.04 E-value=1.4 Score=35.09 Aligned_cols=25 Identities=12% Similarity=0.037 Sum_probs=20.8
Q ss_pred ccccccccccchhhhhcccchhcCCC
Q 022972 226 AGIGGLSEFLGYTSQLCYPFLHISYP 251 (289)
Q Consensus 226 ~~~~G~t~~~Gkt~~l~~l~~~~g~~ 251 (289)
.+++|.. |+|||++.+.|+++.|++
T Consensus 3 I~l~G~~-GsGKsT~a~~L~~~l~~~ 27 (168)
T 2pt5_A 3 IYLIGFM-CSGKSTVGSLLSRSLNIP 27 (168)
T ss_dssp EEEESCT-TSCHHHHHHHHHHHHTCC
T ss_pred EEEECCC-CCCHHHHHHHHHHHhCCC
Confidence 5678888 499999999996556986
No 112
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=66.06 E-value=1.4 Score=36.06 Aligned_cols=28 Identities=18% Similarity=-0.153 Sum_probs=22.4
Q ss_pred Cccccccccccccchhhhhcccchh-cCCC
Q 022972 223 LKFAGIGGLSEFLGYTSQLCYPFLH-ISYP 251 (289)
Q Consensus 223 ~~~~~~~G~t~~~Gkt~~l~~l~~~-~g~~ 251 (289)
....+++|.. |+|||++.+.|+++ .|++
T Consensus 10 ~~~I~l~G~~-GsGKSTv~~~La~~l~g~~ 38 (184)
T 1y63_A 10 GINILITGTP-GTGKTSMAEMIAAELDGFQ 38 (184)
T ss_dssp SCEEEEECST-TSSHHHHHHHHHHHSTTEE
T ss_pred CCEEEEECCC-CCCHHHHHHHHHHhcCCCE
Confidence 3457888888 49999999999555 4886
No 113
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=65.78 E-value=1.5 Score=35.52 Aligned_cols=26 Identities=15% Similarity=-0.136 Sum_probs=21.7
Q ss_pred cccccccccccchhhhhcccchhcCCC
Q 022972 225 FAGIGGLSEFLGYTSQLCYPFLHISYP 251 (289)
Q Consensus 225 ~~~~~G~t~~~Gkt~~l~~l~~~~g~~ 251 (289)
..+++|.. |+|||++-+.|+++.|++
T Consensus 4 ~I~l~G~~-GsGKsT~a~~La~~lg~~ 29 (184)
T 2iyv_A 4 KAVLVGLP-GSGKSTIGRRLAKALGVG 29 (184)
T ss_dssp SEEEECST-TSSHHHHHHHHHHHHTCC
T ss_pred eEEEECCC-CCCHHHHHHHHHHHcCCC
Confidence 46788888 499999999996667997
No 114
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=65.77 E-value=1.3 Score=35.93 Aligned_cols=28 Identities=14% Similarity=-0.088 Sum_probs=22.8
Q ss_pred CccccccccccccchhhhhcccchhcCCC
Q 022972 223 LKFAGIGGLSEFLGYTSQLCYPFLHISYP 251 (289)
Q Consensus 223 ~~~~~~~G~t~~~Gkt~~l~~l~~~~g~~ 251 (289)
.....+.|.+| +|||++.+.|+++.|++
T Consensus 11 ~~~i~i~G~~G-sGKst~~~~l~~~~~~~ 38 (180)
T 3iij_A 11 LPNILLTGTPG-VGKTTLGKELASKSGLK 38 (180)
T ss_dssp CCCEEEECSTT-SSHHHHHHHHHHHHCCE
T ss_pred CCeEEEEeCCC-CCHHHHHHHHHHHhCCe
Confidence 34578899994 99999999996666885
No 115
>2hxp_A Dual specificity protein phosphatase 9; human phosphatase, structural genomics, PSI-2, protein structure initiative; 1.83A {Homo sapiens} PDB: 3lj8_A 1mkp_A
Probab=65.26 E-value=5.2 Score=31.95 Aligned_cols=29 Identities=17% Similarity=0.275 Sum_probs=20.3
Q ss_pred CCCCcEEEEcCCC-CchHHH--HHHHHHccCC
Q 022972 170 PKDTDLIVACQKG-LRSLAA--CELLYNAGYR 198 (289)
Q Consensus 170 ~k~~~IVvyC~~G-~RS~~a--a~~L~~~G~~ 198 (289)
.++.+|+|+|..| .||..+ +.++...|++
T Consensus 83 ~~~~~VlVHC~~G~~RS~~vv~ayLm~~~~~~ 114 (155)
T 2hxp_A 83 SQNCGVLVHSLAGVSRSVTVTVAYLMQKLHLS 114 (155)
T ss_dssp HTTCEEEEECSSSSSHHHHHHHHHHHHHHTCC
T ss_pred HcCCcEEEECCCCCchhHHHHHHHHHHHcCCC
Confidence 3567999999877 587754 4555566764
No 116
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=64.84 E-value=1 Score=36.40 Aligned_cols=25 Identities=16% Similarity=0.242 Sum_probs=20.4
Q ss_pred ccccccccccccchhhhhcccchhcC
Q 022972 224 KFAGIGGLSEFLGYTSQLCYPFLHIS 249 (289)
Q Consensus 224 ~~~~~~G~t~~~Gkt~~l~~l~~~~g 249 (289)
.+.++.|.+| +|||++.+.|+++.|
T Consensus 4 ~~I~i~G~~G-sGKsT~~~~L~~~l~ 28 (192)
T 1kht_A 4 KVVVVTGVPG-VGSTTSSQLAMDNLR 28 (192)
T ss_dssp CEEEEECCTT-SCHHHHHHHHHHHHH
T ss_pred eEEEEECCCC-CCHHHHHHHHHHHHH
Confidence 4678899984 999999999966556
No 117
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=64.58 E-value=1.7 Score=36.01 Aligned_cols=28 Identities=21% Similarity=0.006 Sum_probs=23.1
Q ss_pred CccccccccccccchhhhhcccchhcCCC
Q 022972 223 LKFAGIGGLSEFLGYTSQLCYPFLHISYP 251 (289)
Q Consensus 223 ~~~~~~~G~t~~~Gkt~~l~~l~~~~g~~ 251 (289)
....++.|.+| +|||++.+.|++..|++
T Consensus 18 ~~~I~l~G~~G-sGKSTla~~L~~~lg~~ 45 (202)
T 3t61_A 18 PGSIVVMGVSG-SGKSSVGEAIAEACGYP 45 (202)
T ss_dssp SSCEEEECSTT-SCHHHHHHHHHHHHTCC
T ss_pred CeEEEEECCCC-CCHHHHHHHHHHHhCCE
Confidence 35678899994 99999999996666886
No 118
>3gxh_A Putative phosphatase (DUF442); YP_001181608.1, structural GE joint center for structural genomics, JCSG; HET: MSE; 1.40A {Shewanella putrefaciens cn-32} PDB: 3gxg_A*
Probab=64.39 E-value=22 Score=28.36 Aligned_cols=38 Identities=21% Similarity=0.390 Sum_probs=22.7
Q ss_pred HHHHHHHHhcCCCCCcEEEEcCCCCchHHHH-HHHHHccCC
Q 022972 159 KQFLSKVEEKLPKDTDLIVACQKGLRSLAAC-ELLYNAGYR 198 (289)
Q Consensus 159 ~~f~~~~~~~l~k~~~IVvyC~~G~RS~~aa-~~L~~~G~~ 198 (289)
.++++.+.+...+ +|+|.|.++.|+..++ -.+...|.+
T Consensus 86 ~~~~~~i~~~~G~--dVLVnnAgg~r~~~l~~~~~~~~G~~ 124 (157)
T 3gxh_A 86 EAFFAAMDQHKGK--DVLVHCLANYRASAFAYLYQLKQGQN 124 (157)
T ss_dssp HHHHHHHHHTTTS--CEEEECSBSHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHhcCCC--CEEEECCCCCCHHHHHHHHHHHcCCC
Confidence 3555555544433 8999999887754433 233445654
No 119
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=64.21 E-value=2.1 Score=35.32 Aligned_cols=27 Identities=15% Similarity=-0.054 Sum_probs=22.5
Q ss_pred ccccccccccccchhhhhcccchhcCCC
Q 022972 224 KFAGIGGLSEFLGYTSQLCYPFLHISYP 251 (289)
Q Consensus 224 ~~~~~~G~t~~~Gkt~~l~~l~~~~g~~ 251 (289)
...++.|.. |+|||++.+.|+++.|++
T Consensus 21 ~~I~l~G~~-GsGKST~a~~La~~l~~~ 47 (201)
T 2cdn_A 21 MRVLLLGPP-GAGKGTQAVKLAEKLGIP 47 (201)
T ss_dssp CEEEEECCT-TSSHHHHHHHHHHHHTCC
T ss_pred eEEEEECCC-CCCHHHHHHHHHHHhCCc
Confidence 467888888 599999999996666986
No 120
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=62.76 E-value=1.7 Score=35.41 Aligned_cols=27 Identities=15% Similarity=-0.047 Sum_probs=22.7
Q ss_pred ccccccccccccchhhhhcccchhcCCC
Q 022972 224 KFAGIGGLSEFLGYTSQLCYPFLHISYP 251 (289)
Q Consensus 224 ~~~~~~G~t~~~Gkt~~l~~l~~~~g~~ 251 (289)
.+.++.|.. |+|||++.+.|+++.|++
T Consensus 10 ~~I~l~G~~-GsGKsT~~~~La~~l~~~ 36 (196)
T 2c95_A 10 NIIFVVGGP-GSGKGTQCEKIVQKYGYT 36 (196)
T ss_dssp CEEEEEECT-TSSHHHHHHHHHHHHCCE
T ss_pred CEEEEECCC-CCCHHHHHHHHHHHhCCe
Confidence 567888998 499999999996667985
No 121
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=62.05 E-value=1.9 Score=35.35 Aligned_cols=26 Identities=23% Similarity=0.147 Sum_probs=22.1
Q ss_pred cccccccccccchhhhhcccchhcCCC
Q 022972 225 FAGIGGLSEFLGYTSQLCYPFLHISYP 251 (289)
Q Consensus 225 ~~~~~G~t~~~Gkt~~l~~l~~~~g~~ 251 (289)
..+++|.+ |+|||++.+.|++..|++
T Consensus 4 ~i~i~G~~-GsGKst~~~~la~~lg~~ 29 (208)
T 3ake_A 4 IVTIDGPS-ASGKSSVARRVAAALGVP 29 (208)
T ss_dssp EEEEECST-TSSHHHHHHHHHHHHTCC
T ss_pred EEEEECCC-CCCHHHHHHHHHHhcCCc
Confidence 56888988 499999999996667987
No 122
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=61.89 E-value=2.1 Score=37.22 Aligned_cols=28 Identities=11% Similarity=0.005 Sum_probs=23.3
Q ss_pred CccccccccccccchhhhhcccchhcCCC
Q 022972 223 LKFAGIGGLSEFLGYTSQLCYPFLHISYP 251 (289)
Q Consensus 223 ~~~~~~~G~t~~~Gkt~~l~~l~~~~g~~ 251 (289)
-...++.|.+| +|||++.+.|+++.|++
T Consensus 27 g~~I~I~G~~G-sGKSTl~k~La~~Lg~~ 54 (252)
T 4e22_A 27 APVITVDGPSG-AGKGTLCKALAESLNWR 54 (252)
T ss_dssp SCEEEEECCTT-SSHHHHHHHHHHHTTCE
T ss_pred CcEEEEECCCC-CCHHHHHHHHHHhcCCC
Confidence 35678889984 99999999997777985
No 123
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=61.77 E-value=1.7 Score=35.19 Aligned_cols=27 Identities=15% Similarity=-0.053 Sum_probs=22.1
Q ss_pred ccccccccccccchhhhhcccchhcCCC
Q 022972 224 KFAGIGGLSEFLGYTSQLCYPFLHISYP 251 (289)
Q Consensus 224 ~~~~~~G~t~~~Gkt~~l~~l~~~~g~~ 251 (289)
.+.++.|.. |+|||++.+.|+++.|++
T Consensus 4 ~~I~l~G~~-GsGKsT~a~~L~~~~~~~ 30 (196)
T 1tev_A 4 LVVFVLGGP-GAGKGTQCARIVEKYGYT 30 (196)
T ss_dssp EEEEEECCT-TSSHHHHHHHHHHHHCCE
T ss_pred eEEEEECCC-CCCHHHHHHHHHHHhCCe
Confidence 456788888 499999999996666885
No 124
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=61.71 E-value=1.7 Score=35.11 Aligned_cols=26 Identities=8% Similarity=-0.193 Sum_probs=22.0
Q ss_pred cccccccccccchhhhhcccchhcCCC
Q 022972 225 FAGIGGLSEFLGYTSQLCYPFLHISYP 251 (289)
Q Consensus 225 ~~~~~G~t~~~Gkt~~l~~l~~~~g~~ 251 (289)
...+.|.. |+|||++.+.||++.|++
T Consensus 6 ~i~i~G~~-GsGKsTla~~La~~l~~~ 31 (175)
T 1via_A 6 NIVFIGFM-GSGKSTLARALAKDLDLV 31 (175)
T ss_dssp CEEEECCT-TSCHHHHHHHHHHHHTCE
T ss_pred EEEEEcCC-CCCHHHHHHHHHHHcCCC
Confidence 46788888 499999999997777986
No 125
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=61.22 E-value=1.8 Score=36.51 Aligned_cols=28 Identities=11% Similarity=-0.089 Sum_probs=22.9
Q ss_pred CCccccccccccccchhhhhcccchhc-CCC
Q 022972 222 PLKFAGIGGLSEFLGYTSQLCYPFLHI-SYP 251 (289)
Q Consensus 222 ~~~~~~~~G~t~~~Gkt~~l~~l~~~~-g~~ 251 (289)
.....+++|.. |+|||++.+.| ++. |+|
T Consensus 11 ~~~iIgltG~~-GSGKSTva~~L-~~~lg~~ 39 (192)
T 2grj_A 11 HHMVIGVTGKI-GTGKSTVCEIL-KNKYGAH 39 (192)
T ss_dssp CEEEEEEECST-TSSHHHHHHHH-HHHHCCE
T ss_pred cceEEEEECCC-CCCHHHHHHHH-HHhcCCE
Confidence 34567888888 49999999999 555 997
No 126
>1ohe_A CDC14B, CDC14B2 phosphatase; protein phosphatase, cell cycle, hydrolase; HET: SEP; 2.20A {Homo sapiens} SCOP: c.45.1.1 c.45.1.1 PDB: 1ohc_A 1ohd_A
Probab=60.96 E-value=20 Score=33.01 Aligned_cols=29 Identities=14% Similarity=0.173 Sum_probs=18.9
Q ss_pred CCCCcEEEEcCCCC-chHHHH--HHHHHccCC
Q 022972 170 PKDTDLIVACQKGL-RSLAAC--ELLYNAGYR 198 (289)
Q Consensus 170 ~k~~~IVvyC~~G~-RS~~aa--~~L~~~G~~ 198 (289)
.++.+|+|+|..|. ||..++ .++...|++
T Consensus 267 ~~~~~VLVHC~aG~gRTGtvvaayLm~~~g~s 298 (348)
T 1ohe_A 267 NAEGAIAVHSKAGLGRTGTLIACYIMKHYRMT 298 (348)
T ss_dssp SCSSEEEEECSSSSHHHHHHHHHHHHHHHCCC
T ss_pred hCCCcEEEECCCCCChHHHHHHHHHHHHcCCC
Confidence 45679999998775 766543 344436653
No 127
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=60.86 E-value=1.7 Score=35.10 Aligned_cols=26 Identities=12% Similarity=-0.064 Sum_probs=21.7
Q ss_pred cccccccccccchhhhhcccchhcCCC
Q 022972 225 FAGIGGLSEFLGYTSQLCYPFLHISYP 251 (289)
Q Consensus 225 ~~~~~G~t~~~Gkt~~l~~l~~~~g~~ 251 (289)
..++.|.. |+|||++.+.|+++.|++
T Consensus 6 ~I~l~G~~-GsGKST~~~~La~~l~~~ 31 (186)
T 3cm0_A 6 AVIFLGPP-GAGKGTQASRLAQELGFK 31 (186)
T ss_dssp EEEEECCT-TSCHHHHHHHHHHHHTCE
T ss_pred EEEEECCC-CCCHHHHHHHHHHHhCCe
Confidence 56788888 499999999996667886
No 128
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=60.73 E-value=1.7 Score=36.31 Aligned_cols=26 Identities=15% Similarity=-0.037 Sum_probs=21.6
Q ss_pred cccccccccccchhhhhcccchhcCCC
Q 022972 225 FAGIGGLSEFLGYTSQLCYPFLHISYP 251 (289)
Q Consensus 225 ~~~~~G~t~~~Gkt~~l~~l~~~~g~~ 251 (289)
..++.|.+ |+|||++.+.|++..|+|
T Consensus 7 ~i~i~G~~-GsGKSTl~~~L~~~~g~~ 32 (227)
T 1cke_A 7 VITIDGPS-GAGKGTLCKAMAEALQWH 32 (227)
T ss_dssp EEEEECCT-TSSHHHHHHHHHHHHTCE
T ss_pred EEEEECCC-CCCHHHHHHHHHHHhCCC
Confidence 46788888 499999999996666985
No 129
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=60.60 E-value=1.6 Score=35.14 Aligned_cols=27 Identities=11% Similarity=-0.066 Sum_probs=22.4
Q ss_pred ccccccccccccchhhhhcccchhcCCC
Q 022972 224 KFAGIGGLSEFLGYTSQLCYPFLHISYP 251 (289)
Q Consensus 224 ~~~~~~G~t~~~Gkt~~l~~l~~~~g~~ 251 (289)
...++.|.. |+|||++.+.|+++.|++
T Consensus 7 ~~I~l~G~~-GsGKsT~~~~L~~~l~~~ 33 (194)
T 1qf9_A 7 NVVFVLGGP-GSGKGTQCANIVRDFGWV 33 (194)
T ss_dssp EEEEEEEST-TSSHHHHHHHHHHHHCCE
T ss_pred cEEEEECCC-CCCHHHHHHHHHHHhCCe
Confidence 467889998 499999999996556886
No 130
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=60.24 E-value=2.4 Score=34.28 Aligned_cols=27 Identities=22% Similarity=0.055 Sum_probs=21.6
Q ss_pred ccccccccccccchhhhhcccchhc---CCC
Q 022972 224 KFAGIGGLSEFLGYTSQLCYPFLHI---SYP 251 (289)
Q Consensus 224 ~~~~~~G~t~~~Gkt~~l~~l~~~~---g~~ 251 (289)
.+.+++|.+| +|||++.+.|+... |+|
T Consensus 6 ~~i~l~G~~G-sGKST~~~~L~~~l~~~g~~ 35 (179)
T 2pez_A 6 CTVWLTGLSG-AGKTTVSMALEEYLVCHGIP 35 (179)
T ss_dssp EEEEEECCTT-SSHHHHHHHHHHHHHHTTCC
T ss_pred cEEEEECCCC-CCHHHHHHHHHHHHhhCCCc
Confidence 5678889984 99999999995443 886
No 131
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=60.09 E-value=1.7 Score=35.44 Aligned_cols=27 Identities=19% Similarity=-0.065 Sum_probs=22.4
Q ss_pred ccccccccccccchhhhhcccchhcCCC
Q 022972 224 KFAGIGGLSEFLGYTSQLCYPFLHISYP 251 (289)
Q Consensus 224 ~~~~~~G~t~~~Gkt~~l~~l~~~~g~~ 251 (289)
...++.|.. |+|||++.+.|+++.|++
T Consensus 13 ~~I~l~G~~-GsGKsT~a~~L~~~l~~~ 39 (199)
T 2bwj_A 13 KIIFIIGGP-GSGKGTQCEKLVEKYGFT 39 (199)
T ss_dssp CEEEEEECT-TSSHHHHHHHHHHHHTCE
T ss_pred CEEEEECCC-CCCHHHHHHHHHHHhCCe
Confidence 467888988 499999999996666885
No 132
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=60.07 E-value=2.1 Score=34.79 Aligned_cols=26 Identities=15% Similarity=0.138 Sum_probs=20.0
Q ss_pred cccccccccccchhhhhcccchhc---CCC
Q 022972 225 FAGIGGLSEFLGYTSQLCYPFLHI---SYP 251 (289)
Q Consensus 225 ~~~~~G~t~~~Gkt~~l~~l~~~~---g~~ 251 (289)
+.++.|.. |+|||++.+.|++.. |++
T Consensus 2 ~I~l~G~~-GsGKsT~~~~L~~~l~~~g~~ 30 (197)
T 2z0h_A 2 FITFEGID-GSGKSTQIQLLAQYLEKRGKK 30 (197)
T ss_dssp EEEEECST-TSSHHHHHHHHHHHHHHCCC-
T ss_pred EEEEECCC-CCCHHHHHHHHHHHHHHCCCe
Confidence 46788888 499999999994444 885
No 133
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=59.87 E-value=2.3 Score=34.37 Aligned_cols=26 Identities=19% Similarity=0.189 Sum_probs=20.6
Q ss_pred cccccccccccchhhhhcccchhc---CCC
Q 022972 225 FAGIGGLSEFLGYTSQLCYPFLHI---SYP 251 (289)
Q Consensus 225 ~~~~~G~t~~~Gkt~~l~~l~~~~---g~~ 251 (289)
..+++|.. |+|||++.+.|+++. |++
T Consensus 2 ~I~l~G~~-GsGKsT~~~~L~~~l~~~g~~ 30 (195)
T 2pbr_A 2 LIAFEGID-GSGKTTQAKKLYEYLKQKGYF 30 (195)
T ss_dssp EEEEECST-TSCHHHHHHHHHHHHHHTTCC
T ss_pred EEEEECCC-CCCHHHHHHHHHHHHHHCCCe
Confidence 35788888 499999999995543 886
No 134
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=59.32 E-value=2.2 Score=35.70 Aligned_cols=26 Identities=8% Similarity=-0.098 Sum_probs=21.6
Q ss_pred ccccccccccccchhhhhcccchhcCCC
Q 022972 224 KFAGIGGLSEFLGYTSQLCYPFLHISYP 251 (289)
Q Consensus 224 ~~~~~~G~t~~~Gkt~~l~~l~~~~g~~ 251 (289)
...++.|.+ |+|||++.+.| ++.|++
T Consensus 5 ~~I~i~G~~-GSGKST~~~~L-~~lg~~ 30 (218)
T 1vht_A 5 YIVALTGGI-GSGKSTVANAF-ADLGIN 30 (218)
T ss_dssp EEEEEECCT-TSCHHHHHHHH-HHTTCE
T ss_pred eEEEEECCC-CCCHHHHHHHH-HHcCCE
Confidence 467889998 49999999999 458885
No 135
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=59.21 E-value=2 Score=36.37 Aligned_cols=27 Identities=19% Similarity=-0.085 Sum_probs=22.9
Q ss_pred ccccccccccccchhhhhcccchhcCCC
Q 022972 224 KFAGIGGLSEFLGYTSQLCYPFLHISYP 251 (289)
Q Consensus 224 ~~~~~~G~t~~~Gkt~~l~~l~~~~g~~ 251 (289)
.+.++.|.+ |+|||++.+.|+++.|++
T Consensus 8 ~~I~l~G~~-GsGKsT~a~~La~~l~~~ 34 (227)
T 1zd8_A 8 LRAVIMGAP-GSGKGTVSSRITTHFELK 34 (227)
T ss_dssp CEEEEEECT-TSSHHHHHHHHHHHSSSE
T ss_pred cEEEEECCC-CCCHHHHHHHHHHHcCCe
Confidence 567888998 499999999997777886
No 136
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=59.08 E-value=2.4 Score=37.01 Aligned_cols=26 Identities=19% Similarity=0.071 Sum_probs=21.7
Q ss_pred cccccccccccchhhhhcccchhcCCC
Q 022972 225 FAGIGGLSEFLGYTSQLCYPFLHISYP 251 (289)
Q Consensus 225 ~~~~~G~t~~~Gkt~~l~~l~~~~g~~ 251 (289)
...+.|.+| +|||++.+.||++.|++
T Consensus 3 li~I~G~~G-SGKSTla~~La~~~~~~ 28 (253)
T 2ze6_A 3 LHLIYGPTC-SGKTDMAIQIAQETGWP 28 (253)
T ss_dssp EEEEECCTT-SSHHHHHHHHHHHHCCC
T ss_pred EEEEECCCC-cCHHHHHHHHHhcCCCe
Confidence 567899995 99999999997776775
No 137
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=58.88 E-value=2.3 Score=34.64 Aligned_cols=26 Identities=15% Similarity=-0.023 Sum_probs=20.5
Q ss_pred cccccccccccchhhhhcccchhcCCC
Q 022972 225 FAGIGGLSEFLGYTSQLCYPFLHISYP 251 (289)
Q Consensus 225 ~~~~~G~t~~~Gkt~~l~~l~~~~g~~ 251 (289)
+.++.|.+ |+|||++.+.|+++.|++
T Consensus 2 ~I~i~G~~-GsGKsT~~~~L~~~l~~~ 27 (205)
T 2jaq_A 2 KIAIFGTV-GAGKSTISAEISKKLGYE 27 (205)
T ss_dssp EEEEECCT-TSCHHHHHHHHHHHHCCE
T ss_pred EEEEECCC-ccCHHHHHHHHHHhcCCc
Confidence 35678888 499999999996666763
No 138
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=57.78 E-value=2.8 Score=34.88 Aligned_cols=25 Identities=20% Similarity=-0.002 Sum_probs=20.9
Q ss_pred ccccccccccchhhhhcccchhcCCC
Q 022972 226 AGIGGLSEFLGYTSQLCYPFLHISYP 251 (289)
Q Consensus 226 ~~~~G~t~~~Gkt~~l~~l~~~~g~~ 251 (289)
.++.|.. |+|||++.+.|+++.|++
T Consensus 3 I~l~G~~-GsGKsT~a~~L~~~~~~~ 27 (216)
T 3dl0_A 3 LVLMGLP-GAGKGTQGERIVEKYGIP 27 (216)
T ss_dssp EEEECST-TSSHHHHHHHHHHHSSCC
T ss_pred EEEECCC-CCCHHHHHHHHHHHhCCc
Confidence 4677888 599999999997777987
No 139
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=57.45 E-value=2.6 Score=35.04 Aligned_cols=25 Identities=20% Similarity=0.057 Sum_probs=20.9
Q ss_pred ccccccccccchhhhhcccchhcCCC
Q 022972 226 AGIGGLSEFLGYTSQLCYPFLHISYP 251 (289)
Q Consensus 226 ~~~~G~t~~~Gkt~~l~~l~~~~g~~ 251 (289)
.++.|.. |+|||++.+.|+++.|++
T Consensus 3 I~l~G~~-GsGKsT~a~~L~~~~~~~ 27 (216)
T 3fb4_A 3 IVLMGLP-GAGKGTQAEQIIEKYEIP 27 (216)
T ss_dssp EEEECST-TSSHHHHHHHHHHHHCCC
T ss_pred EEEECCC-CCCHHHHHHHHHHHhCCc
Confidence 4677888 599999999997777987
No 140
>3v0d_A Voltage-sensor containing phosphatase; PTP, hydrolase; HET: PO4; 1.10A {Ciona intestinalis} PDB: 3v0f_A* 3v0g_A 3v0h_A* 3awf_A 3v0j_A 3awe_A 3awg_A 3v0e_A 3v0i_A
Probab=56.68 E-value=16 Score=33.57 Aligned_cols=89 Identities=15% Similarity=0.119 Sum_probs=47.5
Q ss_pred eCHHHHHHhhc---CCCcEEEEeCChhhhhhccCCC-cEeeCCCCCcccccCCCCCccccccccCCccCCCCCCcccHHH
Q 022972 86 LTPREAGYAVQ---LSSKTLLDVRPSTERKKAWIKG-SIWIPIFDIDDTFDAGSLPQKVTNFVMGGWWSGVPTLSYNKQF 161 (289)
Q Consensus 86 Is~~el~~~l~---~~~~vlIDVRs~~Ey~~ghIPG-AinIP~~~~~~~~~vgtlyk~~~~~~~~a~~~g~~~~~~~~~f 161 (289)
-..+++...++ .+.+.+++++++..|......+ -.++|+.+. +.|......++
T Consensus 50 n~i~dv~~~L~~~h~~~y~V~NL~sE~~Yd~~~f~~~v~~~p~pD~-----------------------~~P~~~~l~~~ 106 (339)
T 3v0d_A 50 NPIGEVSRFFKTKHPDKFRIYNLCSERGYDETKFDNHVYRVMIDDH-----------------------NVPTLVDLLKF 106 (339)
T ss_dssp EEHHHHHHHHHHHSTTCEEEEEEETTCCCCGGGGTTCEEEEEECTT-----------------------SCCCHHHHHHH
T ss_pred CCHHHHHHHHHHhCCCceEEEECCCCCCCChHHcCCeEEEeccCCC-----------------------CCCCHHHHHHH
Confidence 34555555443 4578999998766665443333 234454331 11222223345
Q ss_pred HHHHHhcC--CCCCcEEEEcCCCC-chH-HHHHHHHHccC
Q 022972 162 LSKVEEKL--PKDTDLIVACQKGL-RSL-AACELLYNAGY 197 (289)
Q Consensus 162 ~~~~~~~l--~k~~~IVvyC~~G~-RS~-~aa~~L~~~G~ 197 (289)
.+.+...+ +++.+++|.|..|. |+. .+|..|...|.
T Consensus 107 ~~~v~~~l~~~~~~~v~vHC~~G~gRtg~~ia~~Li~~~~ 146 (339)
T 3v0d_A 107 IDDAKVWMTSDPDHVIAIHSKGGKGRTGTLVSSWLLEDGK 146 (339)
T ss_dssp HHHHHHHHHTCTTCEEEEECSSSSHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHhcCCCCeEEEEeCCCCcchHHHHHHHHHHhcC
Confidence 55554433 34568999997665 654 34455555543
No 141
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=56.39 E-value=3.2 Score=34.22 Aligned_cols=25 Identities=20% Similarity=0.150 Sum_probs=20.7
Q ss_pred cccccccccccchhhhhcccchhcCCC
Q 022972 225 FAGIGGLSEFLGYTSQLCYPFLHISYP 251 (289)
Q Consensus 225 ~~~~~G~t~~~Gkt~~l~~l~~~~g~~ 251 (289)
..++.|.. |+|||++.+.| ++.|++
T Consensus 4 ~i~l~G~~-GsGKST~~~~L-a~lg~~ 28 (206)
T 1jjv_A 4 IVGLTGGI-GSGKTTIANLF-TDLGVP 28 (206)
T ss_dssp EEEEECST-TSCHHHHHHHH-HTTTCC
T ss_pred EEEEECCC-CCCHHHHHHHH-HHCCCc
Confidence 45788888 49999999999 558886
No 142
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=54.94 E-value=3.2 Score=33.26 Aligned_cols=28 Identities=11% Similarity=-0.011 Sum_probs=22.7
Q ss_pred CccccccccccccchhhhhcccchhcCCC
Q 022972 223 LKFAGIGGLSEFLGYTSQLCYPFLHISYP 251 (289)
Q Consensus 223 ~~~~~~~G~t~~~Gkt~~l~~l~~~~g~~ 251 (289)
-...++.|.+| +|||++.+.|+...|++
T Consensus 8 g~~i~l~G~~G-sGKSTl~~~l~~~~g~~ 35 (175)
T 1knq_A 8 HHIYVLMGVSG-SGKSAVASEVAHQLHAA 35 (175)
T ss_dssp SEEEEEECSTT-SCHHHHHHHHHHHHTCE
T ss_pred CcEEEEEcCCC-CCHHHHHHHHHHhhCcE
Confidence 35678889984 99999999996556875
No 143
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=54.22 E-value=3.3 Score=34.88 Aligned_cols=27 Identities=19% Similarity=-0.076 Sum_probs=23.4
Q ss_pred ccccccccccccchhhhhcccchhcCCC
Q 022972 224 KFAGIGGLSEFLGYTSQLCYPFLHISYP 251 (289)
Q Consensus 224 ~~~~~~G~t~~~Gkt~~l~~l~~~~g~~ 251 (289)
....+.|.. |+|||+|-+.||++.|||
T Consensus 7 ~iI~i~g~~-GsGk~ti~~~la~~lg~~ 33 (201)
T 3fdi_A 7 IIIAIGREF-GSGGHLVAKKLAEHYNIP 33 (201)
T ss_dssp CEEEEEECT-TSSHHHHHHHHHHHTTCC
T ss_pred eEEEEeCCC-CCCHHHHHHHHHHHhCcC
Confidence 357888888 499999999998888997
No 144
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=54.02 E-value=2.4 Score=33.73 Aligned_cols=27 Identities=11% Similarity=-0.093 Sum_probs=20.9
Q ss_pred ccccccccccccchhhhhcccch-hcCCC
Q 022972 224 KFAGIGGLSEFLGYTSQLCYPFL-HISYP 251 (289)
Q Consensus 224 ~~~~~~G~t~~~Gkt~~l~~l~~-~~g~~ 251 (289)
.+..+.|..| +|||++.+.|++ ..|++
T Consensus 3 ~~I~i~G~~G-sGKST~a~~L~~~~~~~~ 30 (181)
T 1ly1_A 3 KIILTIGCPG-SGKSTWAREFIAKNPGFY 30 (181)
T ss_dssp EEEEEECCTT-SSHHHHHHHHHHHSTTEE
T ss_pred eEEEEecCCC-CCHHHHHHHHHhhcCCcE
Confidence 3567889984 999999999955 35664
No 145
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=54.02 E-value=3.5 Score=33.63 Aligned_cols=24 Identities=13% Similarity=-0.086 Sum_probs=19.6
Q ss_pred Cccccccccccccchhhhhcccchh
Q 022972 223 LKFAGIGGLSEFLGYTSQLCYPFLH 247 (289)
Q Consensus 223 ~~~~~~~G~t~~~Gkt~~l~~l~~~ 247 (289)
-+..++.|.|| +|||++++.|+..
T Consensus 5 g~~i~i~GpsG-sGKSTL~~~L~~~ 28 (180)
T 1kgd_A 5 RKTLVLLGAHG-VGRRHIKNTLITK 28 (180)
T ss_dssp CCEEEEECCTT-SSHHHHHHHHHHH
T ss_pred CCEEEEECCCC-CCHHHHHHHHHhh
Confidence 35778999995 9999999999543
No 146
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=53.72 E-value=3.7 Score=34.96 Aligned_cols=26 Identities=19% Similarity=-0.008 Sum_probs=21.2
Q ss_pred CCCccccccccccccchhhhhcccchh
Q 022972 221 QPLKFAGIGGLSEFLGYTSQLCYPFLH 247 (289)
Q Consensus 221 ~~~~~~~~~G~t~~~Gkt~~l~~l~~~ 247 (289)
.+-++.++.|.|| +|||++++.|++.
T Consensus 17 ~~g~~ivl~GPSG-aGKsTL~~~L~~~ 42 (197)
T 3ney_A 17 QGRKTLVLIGASG-VGRSHIKNALLSQ 42 (197)
T ss_dssp CSCCEEEEECCTT-SSHHHHHHHHHHH
T ss_pred CCCCEEEEECcCC-CCHHHHHHHHHhh
Confidence 3557788999995 9999999999544
No 147
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=53.65 E-value=3 Score=36.94 Aligned_cols=28 Identities=21% Similarity=0.095 Sum_probs=23.1
Q ss_pred CCccccccccccccchhhhhcccchhcCCC
Q 022972 222 PLKFAGIGGLSEFLGYTSQLCYPFLHISYP 251 (289)
Q Consensus 222 ~~~~~~~~G~t~~~Gkt~~l~~l~~~~g~~ 251 (289)
.....+++|.. |+|||++.+.| ++.|++
T Consensus 74 ~~~iI~I~G~~-GSGKSTva~~L-a~lg~~ 101 (281)
T 2f6r_A 74 GLYVLGLTGIS-GSGKSSVAQRL-KNLGAY 101 (281)
T ss_dssp TCEEEEEEECT-TSCHHHHHHHH-HHHTCE
T ss_pred CCEEEEEECCC-CCCHHHHHHHH-HHCCCc
Confidence 34568999999 49999999999 477886
No 148
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=53.43 E-value=4 Score=33.04 Aligned_cols=26 Identities=8% Similarity=-0.206 Sum_probs=20.6
Q ss_pred CCCccccccccccccchhhhhcccchh
Q 022972 221 QPLKFAGIGGLSEFLGYTSQLCYPFLH 247 (289)
Q Consensus 221 ~~~~~~~~~G~t~~~Gkt~~l~~l~~~ 247 (289)
.+-...++.|..| +|||++.+.|+..
T Consensus 7 ~~g~~i~l~G~~G-sGKSTl~~~La~~ 32 (191)
T 1zp6_A 7 LGGNILLLSGHPG-SGKSTIAEALANL 32 (191)
T ss_dssp CTTEEEEEEECTT-SCHHHHHHHHHTC
T ss_pred CCCeEEEEECCCC-CCHHHHHHHHHhc
Confidence 3446678899994 9999999999544
No 149
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=53.39 E-value=2.9 Score=34.45 Aligned_cols=25 Identities=12% Similarity=-0.134 Sum_probs=20.2
Q ss_pred cccccccccccchhhhhcccchhcCCC
Q 022972 225 FAGIGGLSEFLGYTSQLCYPFLHISYP 251 (289)
Q Consensus 225 ~~~~~G~t~~~Gkt~~l~~l~~~~g~~ 251 (289)
..++.|.. |+|||++.+.|++ .|++
T Consensus 3 ~i~i~G~~-GsGKSTl~~~L~~-~g~~ 27 (204)
T 2if2_A 3 RIGLTGNI-GCGKSTVAQMFRE-LGAY 27 (204)
T ss_dssp EEEEEECT-TSSHHHHHHHHHH-TTCE
T ss_pred EEEEECCC-CcCHHHHHHHHHH-CCCE
Confidence 35778888 4999999999955 8885
No 150
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=53.01 E-value=3.2 Score=34.89 Aligned_cols=23 Identities=26% Similarity=0.183 Sum_probs=18.9
Q ss_pred ccccccccccccchhhhhcccchh
Q 022972 224 KFAGIGGLSEFLGYTSQLCYPFLH 247 (289)
Q Consensus 224 ~~~~~~G~t~~~Gkt~~l~~l~~~ 247 (289)
++.++.|.|| +|||++.++|.++
T Consensus 2 RpIVi~GPSG-~GK~Tl~~~L~~~ 24 (186)
T 1ex7_A 2 RPIVISGPSG-TGKSTLLKKLFAE 24 (186)
T ss_dssp CCEEEECCTT-SSHHHHHHHHHHH
T ss_pred CEEEEECCCC-CCHHHHHHHHHHh
Confidence 3578999995 9999999998444
No 151
>4a29_A Engineered retro-aldol enzyme RA95.0; de novo protein, engineered enzyme, retro-aldolase, directed evolution; HET: 3NK MLT; 1.10A {Synthetic construct} PDB: 4a2s_A* 4a2r_A* 3tc7_A 3tc6_A 3nl8_A* 3nxf_A* 3o6y_X 3ud6_A* 1igs_A 1juk_A 1jul_A* 3hoj_A 1a53_A* 1lbf_A* 1lbl_A* 3nyz_A 3nz1_A* 3uy7_A 3uxd_A* 3uxa_A* ...
Probab=52.77 E-value=45 Score=29.60 Aligned_cols=89 Identities=20% Similarity=0.256 Sum_probs=56.6
Q ss_pred eeCHHHHHHhhc----CCCcEEEEeCChhhhhhccCCCcEeeCCCCCcccccCCCCCccccccccCCccCCCCCCcccHH
Q 022972 85 VLTPREAGYAVQ----LSSKTLLDVRPSTERKKAWIKGSIWIPIFDIDDTFDAGSLPQKVTNFVMGGWWSGVPTLSYNKQ 160 (289)
Q Consensus 85 ~Is~~el~~~l~----~~~~vlIDVRs~~Ey~~ghIPGAinIP~~~~~~~~~vgtlyk~~~~~~~~a~~~g~~~~~~~~~ 160 (289)
.++.+++.++.+ .+=-++|.|.++.|-+...=.|+--|-+++ +.+..+..+.+
T Consensus 136 ~L~~~~l~~l~~~A~~lGl~~LvEVh~~~El~rAl~~~a~iIGINN-----------------------RnL~tf~vdl~ 192 (258)
T 4a29_A 136 ILTERELESLLEYARSYGMEPLILINDENDLDIALRIGARFIGIMS-----------------------RDFETGEINKE 192 (258)
T ss_dssp GSCHHHHHHHHHHHHHTTCCCEEEESSHHHHHHHHHTTCSEEEECS-----------------------BCTTTCCBCHH
T ss_pred hcCHHHHHHHHHHHHHHhHHHHHhcchHHHHHHHhcCCCcEEEEeC-----------------------CCccccccCHH
Confidence 455565555442 222478888888888765444554443332 12223344455
Q ss_pred HHHHHHhcCCCCCcEEEEcCCCCchHHHHHHHHHccCC
Q 022972 161 FLSKVEEKLPKDTDLIVACQKGLRSLAACELLYNAGYR 198 (289)
Q Consensus 161 f~~~~~~~l~k~~~IVvyC~~G~RS~~aa~~L~~~G~~ 198 (289)
-..++...+|++ +++++.+|.++..-+..|+..|++
T Consensus 193 ~t~~L~~~ip~~--~~~VsESGI~t~~dv~~l~~~G~~ 228 (258)
T 4a29_A 193 NQRKLISMIPSN--VVKVAKLGISERNEIEELRKLGVN 228 (258)
T ss_dssp HHHHHHTTSCTT--SEEEEEESSCCHHHHHHHHHTTCC
T ss_pred HHHHHHhhCCCC--CEEEEcCCCCCHHHHHHHHHCCCC
Confidence 566666677754 566788999999999999999997
No 152
>2c46_A MRNA capping enzyme; phosphatase, transferase, hydrolase, mRNA processing, multifunctional enzyme, nucleotidyltransferase; 1.6A {Homo sapiens} PDB: 1i9s_A 1i9t_A
Probab=51.42 E-value=22 Score=30.83 Aligned_cols=39 Identities=18% Similarity=0.198 Sum_probs=21.3
Q ss_pred HHHHHHHhcCC--CCCcEEEEcCCCC-chHHH--HHHHHHccCC
Q 022972 160 QFLSKVEEKLP--KDTDLIVACQKGL-RSLAA--CELLYNAGYR 198 (289)
Q Consensus 160 ~f~~~~~~~l~--k~~~IVvyC~~G~-RS~~a--a~~L~~~G~~ 198 (289)
+|++.+.+.+. ++.+|+|.|..|. ||..+ +.++...|++
T Consensus 127 ~~~~~i~~~~~~~~~~~VlVHC~aG~gRTGt~ia~yLm~~~~~s 170 (241)
T 2c46_A 127 TFIRLCERFNERNPPELIGVHCTHGFNRTGFLICAFLVEKMDWS 170 (241)
T ss_dssp HHHHHHTTC-----CEEEEEECSSSSHHHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHHhCCCCeEEEECCCCCCHHHHHHHHHHHHHhCCC
Confidence 45554443333 2468999998766 76643 3334435653
No 153
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=51.38 E-value=3.6 Score=35.00 Aligned_cols=28 Identities=14% Similarity=-0.246 Sum_probs=22.9
Q ss_pred CccccccccccccchhhhhcccchhcCCC
Q 022972 223 LKFAGIGGLSEFLGYTSQLCYPFLHISYP 251 (289)
Q Consensus 223 ~~~~~~~G~t~~~Gkt~~l~~l~~~~g~~ 251 (289)
....++.|.. |+|||++.+.|+++.|++
T Consensus 16 ~~~I~l~G~~-GsGKsT~a~~La~~l~~~ 43 (233)
T 1ak2_A 16 GVRAVLLGPP-GAGKGTQAPKLAKNFCVC 43 (233)
T ss_dssp CCEEEEECCT-TSSHHHHHHHHHHHHTCE
T ss_pred CeEEEEECCC-CCCHHHHHHHHHHHhCCc
Confidence 3567888888 599999999997777885
No 154
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=51.24 E-value=3 Score=34.07 Aligned_cols=27 Identities=22% Similarity=0.133 Sum_probs=21.1
Q ss_pred ccccccccccccchhhhhcccchhc-CCC
Q 022972 224 KFAGIGGLSEFLGYTSQLCYPFLHI-SYP 251 (289)
Q Consensus 224 ~~~~~~G~t~~~Gkt~~l~~l~~~~-g~~ 251 (289)
.+.++.|.. |+|||++.+.|+++. |++
T Consensus 5 ~~I~l~G~~-GsGKsT~~~~L~~~l~g~~ 32 (204)
T 2v54_A 5 ALIVFEGLD-KSGKTTQCMNIMESIPANT 32 (204)
T ss_dssp CEEEEECCT-TSSHHHHHHHHHHTSCGGG
T ss_pred cEEEEEcCC-CCCHHHHHHHHHHHHCCCc
Confidence 467888888 499999999995544 674
No 155
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=51.15 E-value=4 Score=33.74 Aligned_cols=29 Identities=17% Similarity=0.056 Sum_probs=23.0
Q ss_pred CCccccccccccccchhhhhcccchhcCCC
Q 022972 222 PLKFAGIGGLSEFLGYTSQLCYPFLHISYP 251 (289)
Q Consensus 222 ~~~~~~~~G~t~~~Gkt~~l~~l~~~~g~~ 251 (289)
+-...++.|..| +|||++.+.|+...|+.
T Consensus 28 ~g~~i~l~G~~G-sGKSTl~~~L~~~~g~~ 56 (200)
T 4eun_A 28 PTRHVVVMGVSG-SGKTTIAHGVADETGLE 56 (200)
T ss_dssp CCCEEEEECCTT-SCHHHHHHHHHHHHCCE
T ss_pred CCcEEEEECCCC-CCHHHHHHHHHHhhCCe
Confidence 345678889984 99999999996666775
No 156
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=50.89 E-value=15 Score=29.09 Aligned_cols=46 Identities=13% Similarity=0.202 Sum_probs=35.0
Q ss_pred HHHHHHhcCCCCCcEEEEcCCCCchHHHHHHHHHccCCCeeEccccHH
Q 022972 161 FLSKVEEKLPKDTDLIVACQKGLRSLAACELLYNAGYRNLFWVQGGLE 208 (289)
Q Consensus 161 f~~~~~~~l~k~~~IVvyC~~G~RS~~aa~~L~~~G~~nV~~L~GG~~ 208 (289)
.+.++.+.. ++.+++|||++-..+..++..|...|+. +..+.|++.
T Consensus 20 ~l~~ll~~~-~~~~~lVF~~~~~~~~~l~~~L~~~~~~-~~~~~~~~~ 65 (165)
T 1fuk_A 20 CLTDLYDSI-SVTQAVIFCNTRRKVEELTTKLRNDKFT-VSAIYSDLP 65 (165)
T ss_dssp HHHHHHHHT-TCSCEEEEESSHHHHHHHHHHHHHTTCC-EEEECTTSC
T ss_pred HHHHHHHhC-CCCCEEEEECCHHHHHHHHHHHHHcCCC-EEEEECCCC
Confidence 333444343 3458999999878888999999999995 889999864
No 157
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=49.71 E-value=19 Score=28.94 Aligned_cols=37 Identities=14% Similarity=0.291 Sum_probs=31.7
Q ss_pred CCCcEEEEcCCCCchHHHHHHHHHccCCCeeEccccHH
Q 022972 171 KDTDLIVACQKGLRSLAACELLYNAGYRNLFWVQGGLE 208 (289)
Q Consensus 171 k~~~IVvyC~~G~RS~~aa~~L~~~G~~nV~~L~GG~~ 208 (289)
+..+++|||++-..+..++..|...|++ +..+.|++.
T Consensus 30 ~~~~~lVF~~~~~~~~~l~~~L~~~~~~-~~~~hg~~~ 66 (172)
T 1t5i_A 30 EFNQVVIFVKSVQRCIALAQLLVEQNFP-AIAIHRGMP 66 (172)
T ss_dssp CCSSEEEECSSHHHHHHHHHHHHHTTCC-EEEECTTSC
T ss_pred CCCcEEEEECCHHHHHHHHHHHHhcCCC-EEEEECCCC
Confidence 3458999999877888999999999996 889999864
No 158
>3nme_A Ptpkis1 protein, SEX4 glucan phosphatase; dual specificity phosphatase, carbohydrate BIND hydrolase; 2.40A {Arabidopsis thaliana}
Probab=49.62 E-value=13 Score=33.42 Aligned_cols=28 Identities=21% Similarity=0.379 Sum_probs=18.6
Q ss_pred CCCcEEEEcCCCC-chHH--HHHHHHHccCC
Q 022972 171 KDTDLIVACQKGL-RSLA--ACELLYNAGYR 198 (289)
Q Consensus 171 k~~~IVvyC~~G~-RS~~--aa~~L~~~G~~ 198 (289)
.+.+|+|+|..|. ||.. ++.++...|++
T Consensus 105 ~g~~VLVHC~aG~sRS~tvv~ayLm~~~g~s 135 (294)
T 3nme_A 105 NGGVTYVHSTAGMGRAPAVALTYMFWVQGYK 135 (294)
T ss_dssp HCSEEEEECSSSSSHHHHHHHHHHHHTSCCC
T ss_pred CCCEEEEECCCCCchhHHHHHHHHHHHhCCC
Confidence 3568999998776 7664 34455555664
No 159
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=49.53 E-value=14 Score=29.56 Aligned_cols=37 Identities=16% Similarity=0.169 Sum_probs=31.6
Q ss_pred CCCcEEEEcCCCCchHHHHHHHHHccCCCeeEccccHH
Q 022972 171 KDTDLIVACQKGLRSLAACELLYNAGYRNLFWVQGGLE 208 (289)
Q Consensus 171 k~~~IVvyC~~G~RS~~aa~~L~~~G~~nV~~L~GG~~ 208 (289)
+..+++|||++-..+..++..|...|+. +..+.|++.
T Consensus 33 ~~~~~lVF~~~~~~~~~l~~~L~~~~~~-~~~~~g~~~ 69 (175)
T 2rb4_A 33 TIGQAIIFCQTRRNAKWLTVEMIQDGHQ-VSLLSGELT 69 (175)
T ss_dssp CCSEEEEECSCHHHHHHHHHHHHTTTCC-EEEECSSCC
T ss_pred CCCCEEEEECCHHHHHHHHHHHHHcCCc-EEEEeCCCC
Confidence 3468999999877888999999999995 889999864
No 160
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=49.44 E-value=12 Score=29.71 Aligned_cols=37 Identities=19% Similarity=0.285 Sum_probs=31.6
Q ss_pred CCCcEEEEcCCCCchHHHHHHHHHccCCCeeEccccHH
Q 022972 171 KDTDLIVACQKGLRSLAACELLYNAGYRNLFWVQGGLE 208 (289)
Q Consensus 171 k~~~IVvyC~~G~RS~~aa~~L~~~G~~nV~~L~GG~~ 208 (289)
++.+++|||++-..+..++..|...|++ +..+.|++.
T Consensus 34 ~~~~~lVF~~~~~~~~~l~~~L~~~~~~-~~~~hg~~~ 70 (163)
T 2hjv_A 34 NPDSCIIFCRTKEHVNQLTDELDDLGYP-CDKIHGGMI 70 (163)
T ss_dssp CCSSEEEECSSHHHHHHHHHHHHHTTCC-EEEECTTSC
T ss_pred CCCcEEEEECCHHHHHHHHHHHHHcCCc-EEEEeCCCC
Confidence 3458999999877889999999999996 889999864
No 161
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=49.31 E-value=4.5 Score=33.82 Aligned_cols=25 Identities=16% Similarity=0.012 Sum_probs=20.2
Q ss_pred CCccccccccccccchhhhhcccchh
Q 022972 222 PLKFAGIGGLSEFLGYTSQLCYPFLH 247 (289)
Q Consensus 222 ~~~~~~~~G~t~~~Gkt~~l~~l~~~ 247 (289)
+-.+.++.|.+| +|||++.+.|+..
T Consensus 7 ~g~~i~l~GpsG-sGKsTl~~~L~~~ 31 (208)
T 3tau_A 7 RGLLIVLSGPSG-VGKGTVREAVFKD 31 (208)
T ss_dssp CCCEEEEECCTT-SCHHHHHHHHHHS
T ss_pred CCcEEEEECcCC-CCHHHHHHHHHhh
Confidence 345778999995 9999999999544
No 162
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=49.12 E-value=5.1 Score=34.79 Aligned_cols=29 Identities=10% Similarity=-0.119 Sum_probs=23.1
Q ss_pred ccccccccccccchhhhhcccchh---cCCCCc
Q 022972 224 KFAGIGGLSEFLGYTSQLCYPFLH---ISYPST 253 (289)
Q Consensus 224 ~~~~~~G~t~~~Gkt~~l~~l~~~---~g~~~~ 253 (289)
.+..+.|.. |+|||++.+.|++. .|++..
T Consensus 5 ~lIvl~G~p-GSGKSTla~~La~~L~~~g~~~i 36 (260)
T 3a4m_A 5 MLIILTGLP-GVGKSTFSKNLAKILSKNNIDVI 36 (260)
T ss_dssp EEEEEECCT-TSSHHHHHHHHHHHHHHTTCCEE
T ss_pred EEEEEEcCC-CCCHHHHHHHHHHHHHhCCCEEE
Confidence 467889998 49999999999655 688633
No 163
>1jzt_A Hypothetical 27.5 kDa protein in SPX19-GCR2 inter region; yeast hypothetical protein, structural genomics, selenomethi PSI; 1.94A {Saccharomyces cerevisiae} SCOP: c.104.1.1
Probab=48.78 E-value=24 Score=30.87 Aligned_cols=30 Identities=20% Similarity=0.210 Sum_probs=24.3
Q ss_pred CcEEEEcCCCC---chHHHHHHHHHccCCCeeEc
Q 022972 173 TDLIVACQKGL---RSLAACELLYNAGYRNLFWV 203 (289)
Q Consensus 173 ~~IVvyC~~G~---RS~~aa~~L~~~G~~nV~~L 203 (289)
++|+|.|..|+ ....+|+.|...||+ |.++
T Consensus 59 ~~v~VlcG~GNNGGDGlv~AR~L~~~G~~-V~v~ 91 (246)
T 1jzt_A 59 KHVFVIAGPGNNGGDGLVCARHLKLFGYN-PVVF 91 (246)
T ss_dssp CEEEEEECSSHHHHHHHHHHHHHHHTTCC-EEEE
T ss_pred CeEEEEECCCCCHHHHHHHHHHHHHCCCe-EEEE
Confidence 58999997555 678899999999996 6644
No 164
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=48.55 E-value=5.8 Score=32.31 Aligned_cols=27 Identities=11% Similarity=-0.080 Sum_probs=20.6
Q ss_pred CccccccccccccchhhhhcccchhcCCC
Q 022972 223 LKFAGIGGLSEFLGYTSQLCYPFLHISYP 251 (289)
Q Consensus 223 ~~~~~~~G~t~~~Gkt~~l~~l~~~~g~~ 251 (289)
-...++.|.+| +|||++.+.| .+...|
T Consensus 6 g~~i~l~G~~G-sGKSTl~~~L-~~~~~~ 32 (207)
T 2j41_A 6 GLLIVLSGPSG-VGKGTVRKRI-FEDPST 32 (207)
T ss_dssp CCEEEEECSTT-SCHHHHHHHH-HHCTTC
T ss_pred CCEEEEECCCC-CCHHHHHHHH-HHhhCC
Confidence 35678889984 9999999999 554433
No 165
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=48.35 E-value=4.1 Score=34.09 Aligned_cols=27 Identities=11% Similarity=-0.231 Sum_probs=22.2
Q ss_pred ccccccccccccchhhhhcccchhcCCC
Q 022972 224 KFAGIGGLSEFLGYTSQLCYPFLHISYP 251 (289)
Q Consensus 224 ~~~~~~G~t~~~Gkt~~l~~l~~~~g~~ 251 (289)
...++.|.. |+|||++.+.|+++.|++
T Consensus 5 ~~I~l~G~~-GsGKsT~a~~La~~l~~~ 31 (220)
T 1aky_A 5 IRMVLIGPP-GAGKGTQAPNLQERFHAA 31 (220)
T ss_dssp CEEEEECCT-TSSHHHHHHHHHHHHCCE
T ss_pred cEEEEECCC-CCCHHHHHHHHHHHcCce
Confidence 456788888 599999999997767885
No 166
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=47.71 E-value=4.3 Score=33.87 Aligned_cols=25 Identities=16% Similarity=0.139 Sum_probs=20.5
Q ss_pred ccccccccccchhhhhcccchhcCCC
Q 022972 226 AGIGGLSEFLGYTSQLCYPFLHISYP 251 (289)
Q Consensus 226 ~~~~G~t~~~Gkt~~l~~l~~~~g~~ 251 (289)
.++.|.. |+|||++.+.|+++.|++
T Consensus 3 I~l~G~~-GsGKsT~a~~L~~~~g~~ 27 (214)
T 1e4v_A 3 IILLGAP-VAGKGTQAQFIMEKYGIP 27 (214)
T ss_dssp EEEEEST-TSSHHHHHHHHHHHHCCC
T ss_pred EEEECCC-CCCHHHHHHHHHHHhCCe
Confidence 4677887 599999999996667986
No 167
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=47.70 E-value=4.5 Score=34.42 Aligned_cols=28 Identities=11% Similarity=-0.002 Sum_probs=22.2
Q ss_pred CccccccccccccchhhhhcccchhcCCC
Q 022972 223 LKFAGIGGLSEFLGYTSQLCYPFLHISYP 251 (289)
Q Consensus 223 ~~~~~~~G~t~~~Gkt~~l~~l~~~~g~~ 251 (289)
....++.|.. |+|||++.+.|+++.|++
T Consensus 16 ~~~i~i~G~~-gsGKst~~~~l~~~lg~~ 43 (236)
T 1q3t_A 16 TIQIAIDGPA-SSGKSTVAKIIAKDFGFT 43 (236)
T ss_dssp CCEEEEECSS-CSSHHHHHHHHHHHHCCE
T ss_pred CcEEEEECCC-CCCHHHHHHHHHHHcCCc
Confidence 3456788888 599999999996667985
No 168
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=47.27 E-value=2.6 Score=34.74 Aligned_cols=26 Identities=23% Similarity=0.152 Sum_probs=20.4
Q ss_pred ccccccccccccchhhhhcccchhcCC
Q 022972 224 KFAGIGGLSEFLGYTSQLCYPFLHISY 250 (289)
Q Consensus 224 ~~~~~~G~t~~~Gkt~~l~~l~~~~g~ 250 (289)
...++.|.. |+|||++.+.|++..|+
T Consensus 11 ~~I~l~G~~-GsGKST~~~~L~~~l~~ 36 (212)
T 2wwf_A 11 KFIVFEGLD-RSGKSTQSKLLVEYLKN 36 (212)
T ss_dssp CEEEEEEST-TSSHHHHHHHHHHHHHH
T ss_pred CEEEEEcCC-CCCHHHHHHHHHHHHHH
Confidence 567888988 49999999999554443
No 169
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=46.91 E-value=4.8 Score=32.89 Aligned_cols=27 Identities=19% Similarity=0.066 Sum_probs=21.3
Q ss_pred ccccccccccccchhhhhcccchhcCCC
Q 022972 224 KFAGIGGLSEFLGYTSQLCYPFLHISYP 251 (289)
Q Consensus 224 ~~~~~~G~t~~~Gkt~~l~~l~~~~g~~ 251 (289)
...++.|.. |+|||++.+.|+++.|.+
T Consensus 5 ~~I~i~G~~-GsGKsT~~~~L~~~l~~~ 31 (213)
T 2plr_A 5 VLIAFEGID-GSGKSSQATLLKDWIELK 31 (213)
T ss_dssp EEEEEECCT-TSSHHHHHHHHHHHHTTT
T ss_pred eEEEEEcCC-CCCHHHHHHHHHHHHhhc
Confidence 467888888 499999999996655653
No 170
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=46.85 E-value=4.5 Score=33.60 Aligned_cols=26 Identities=12% Similarity=-0.028 Sum_probs=21.4
Q ss_pred cccccccccccchhhhhcccchhcCCC
Q 022972 225 FAGIGGLSEFLGYTSQLCYPFLHISYP 251 (289)
Q Consensus 225 ~~~~~G~t~~~Gkt~~l~~l~~~~g~~ 251 (289)
..+++|.. |+|||++.+.|+++.|++
T Consensus 5 ~i~i~G~~-gsGkst~~~~l~~~~g~~ 30 (219)
T 2h92_A 5 NIALDGPA-AAGKSTIAKRVASELSMI 30 (219)
T ss_dssp CEEEECCT-TSSHHHHHHHHHHHTTCE
T ss_pred EEEEECCC-CCCHHHHHHHHHHhcCCc
Confidence 46788888 499999999996667986
No 171
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=46.84 E-value=4.4 Score=33.96 Aligned_cols=27 Identities=15% Similarity=-0.080 Sum_probs=22.4
Q ss_pred ccccccccccccchhhhhcccchhcCCC
Q 022972 224 KFAGIGGLSEFLGYTSQLCYPFLHISYP 251 (289)
Q Consensus 224 ~~~~~~G~t~~~Gkt~~l~~l~~~~g~~ 251 (289)
...++.|.. |+|||++.+.|+++.|++
T Consensus 6 ~~I~l~G~~-GsGKsT~~~~La~~l~~~ 32 (222)
T 1zak_A 6 LKVMISGAP-ASGKGTQCELIKTKYQLA 32 (222)
T ss_dssp CCEEEEEST-TSSHHHHHHHHHHHHCCE
T ss_pred eEEEEECCC-CCCHHHHHHHHHHHhCCc
Confidence 456788888 499999999997777886
No 172
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=46.58 E-value=4.7 Score=34.70 Aligned_cols=27 Identities=15% Similarity=0.070 Sum_probs=22.0
Q ss_pred ccccccccccccchhhhhcccchhcCCC
Q 022972 224 KFAGIGGLSEFLGYTSQLCYPFLHISYP 251 (289)
Q Consensus 224 ~~~~~~G~t~~~Gkt~~l~~l~~~~g~~ 251 (289)
...+++|.+ |+|||++.+.|+++.|++
T Consensus 23 ~iI~I~G~~-GSGKST~a~~L~~~lg~~ 49 (252)
T 1uj2_A 23 FLIGVSGGT-ASGKSSVCAKIVQLLGQN 49 (252)
T ss_dssp EEEEEECST-TSSHHHHHHHHHHHTTGG
T ss_pred EEEEEECCC-CCCHHHHHHHHHHHhhhh
Confidence 457889998 499999999995556874
No 173
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=46.21 E-value=4.3 Score=32.53 Aligned_cols=24 Identities=17% Similarity=0.137 Sum_probs=19.0
Q ss_pred ccccccccccccchhhhhcccchhc
Q 022972 224 KFAGIGGLSEFLGYTSQLCYPFLHI 248 (289)
Q Consensus 224 ~~~~~~G~t~~~Gkt~~l~~l~~~~ 248 (289)
++.++.|.+ |+|||++.+.|+++.
T Consensus 2 ~~I~i~G~~-GsGKsT~~~~L~~~l 25 (194)
T 1nks_A 2 KIGIVTGIP-GVGKSTVLAKVKEIL 25 (194)
T ss_dssp EEEEEEECT-TSCHHHHHHHHHHHH
T ss_pred eEEEEECCC-CCCHHHHHHHHHHHH
Confidence 356788998 499999999996543
No 174
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=46.10 E-value=7.6 Score=34.40 Aligned_cols=28 Identities=21% Similarity=0.100 Sum_probs=23.0
Q ss_pred CccccccccccccchhhhhcccchhcCCC
Q 022972 223 LKFAGIGGLSEFLGYTSQLCYPFLHISYP 251 (289)
Q Consensus 223 ~~~~~~~G~t~~~Gkt~~l~~l~~~~g~~ 251 (289)
..-..++|.+| +|||.+.+.+|++.|.+
T Consensus 36 p~~lLl~GppG-tGKT~la~aiA~~l~~~ 63 (293)
T 3t15_A 36 PLILGIWGGKG-QGKSFQCELVFRKMGIN 63 (293)
T ss_dssp CSEEEEEECTT-SCHHHHHHHHHHHHTCC
T ss_pred CeEEEEECCCC-CCHHHHHHHHHHHhCCC
Confidence 34456789984 99999999998888987
No 175
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=45.83 E-value=5.2 Score=34.17 Aligned_cols=28 Identities=14% Similarity=-0.185 Sum_probs=22.9
Q ss_pred ccccccccccccchhhhhcccchhcCCCC
Q 022972 224 KFAGIGGLSEFLGYTSQLCYPFLHISYPS 252 (289)
Q Consensus 224 ~~~~~~G~t~~~Gkt~~l~~l~~~~g~~~ 252 (289)
...++.|.. |+|||++++.|+++.|++.
T Consensus 28 ~~i~l~G~~-GsGKSTl~k~La~~lg~~~ 55 (246)
T 2bbw_A 28 LRAVILGPP-GSGKGTVCQRIAQNFGLQH 55 (246)
T ss_dssp CEEEEECCT-TSSHHHHHHHHHHHHCCCC
T ss_pred cEEEEECCC-CCCHHHHHHHHHHHhCCeE
Confidence 567888888 4999999999976668863
No 176
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=45.07 E-value=4.5 Score=35.49 Aligned_cols=28 Identities=14% Similarity=-0.015 Sum_probs=23.2
Q ss_pred CccccccccccccchhhhhcccchhcCCC
Q 022972 223 LKFAGIGGLSEFLGYTSQLCYPFLHISYP 251 (289)
Q Consensus 223 ~~~~~~~G~t~~~Gkt~~l~~l~~~~g~~ 251 (289)
-...++.|.+| .|||++.+.||+..|++
T Consensus 48 g~~i~l~G~~G-sGKSTl~~~La~~lg~~ 75 (250)
T 3nwj_A 48 GRSMYLVGMMG-SGKTTVGKIMARSLGYT 75 (250)
T ss_dssp TCCEEEECSTT-SCHHHHHHHHHHHHTCE
T ss_pred CCEEEEECCCC-CCHHHHHHHHHHhcCCc
Confidence 35678888884 99999999997778985
No 177
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=44.63 E-value=4.6 Score=34.17 Aligned_cols=26 Identities=19% Similarity=-0.213 Sum_probs=20.9
Q ss_pred cccccccccccchhhhhcccchhcCCC
Q 022972 225 FAGIGGLSEFLGYTSQLCYPFLHISYP 251 (289)
Q Consensus 225 ~~~~~G~t~~~Gkt~~l~~l~~~~g~~ 251 (289)
+.++.|.. |+|||++.+.|+++.|++
T Consensus 2 ~I~l~G~~-GsGKsT~a~~La~~lg~~ 27 (223)
T 2xb4_A 2 NILIFGPN-GSGKGTQGNLVKDKYSLA 27 (223)
T ss_dssp EEEEECCT-TSCHHHHHHHHHHHHTCE
T ss_pred EEEEECCC-CCCHHHHHHHHHHHhCCe
Confidence 35677888 499999999996666885
No 178
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=44.52 E-value=5.2 Score=34.45 Aligned_cols=28 Identities=14% Similarity=-0.266 Sum_probs=22.5
Q ss_pred CccccccccccccchhhhhcccchhcCCC
Q 022972 223 LKFAGIGGLSEFLGYTSQLCYPFLHISYP 251 (289)
Q Consensus 223 ~~~~~~~G~t~~~Gkt~~l~~l~~~~g~~ 251 (289)
....++.|.. |+|||++.+.|+++.|++
T Consensus 29 ~~~I~l~G~~-GsGKsT~a~~L~~~~g~~ 56 (243)
T 3tlx_A 29 DGRYIFLGAP-GSGKGTQSLNLKKSHCYC 56 (243)
T ss_dssp CEEEEEECCT-TSSHHHHHHHHHHHHCCE
T ss_pred CcEEEEECCC-CCCHHHHHHHHHHHhCCe
Confidence 3456788888 599999999996666886
No 179
>3nbm_A PTS system, lactose-specific IIBC components; PTS_IIB_LACTOSE, phosphoenolpyruvate:carbohydrate system, P- phosphorylation; HET: MSE; 1.30A {Streptococcus pneumoniae}
Probab=44.42 E-value=13 Score=28.42 Aligned_cols=34 Identities=15% Similarity=0.208 Sum_probs=23.6
Q ss_pred CCCCcEEEEcCCCCchHHHHHHHHH----ccCCCeeEcc
Q 022972 170 PKDTDLIVACQKGLRSLAACELLYN----AGYRNLFWVQ 204 (289)
Q Consensus 170 ~k~~~IVvyC~~G~RS~~aa~~L~~----~G~~nV~~L~ 204 (289)
.+..+|++.|.+|+.|..++..+++ .|++ +.+..
T Consensus 4 ~~~mkIlL~C~aGmSTsllv~km~~~a~~~gi~-v~i~a 41 (108)
T 3nbm_A 4 SKELKVLVLCAGSGTSAQLANAINEGANLTEVR-VIANS 41 (108)
T ss_dssp -CCEEEEEEESSSSHHHHHHHHHHHHHHHHTCS-EEEEE
T ss_pred ccCceEEEECCCCCCHHHHHHHHHHHHHHCCCc-eEEEE
Confidence 3455799999999987777776654 5775 55543
No 180
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=44.22 E-value=6.1 Score=32.69 Aligned_cols=26 Identities=12% Similarity=0.032 Sum_probs=20.6
Q ss_pred CCccccccccccccchhhhhcccchhc
Q 022972 222 PLKFAGIGGLSEFLGYTSQLCYPFLHI 248 (289)
Q Consensus 222 ~~~~~~~~G~t~~~Gkt~~l~~l~~~~ 248 (289)
+-...++.|.+| +|||++.+.|++..
T Consensus 11 ~~~~i~l~G~sG-sGKsTl~~~L~~~~ 36 (204)
T 2qor_A 11 RIPPLVVCGPSG-VGKGTLIKKVLSEF 36 (204)
T ss_dssp CCCCEEEECCTT-SCHHHHHHHHHHHC
T ss_pred cCCEEEEECCCC-CCHHHHHHHHHHhC
Confidence 445678889995 99999999995544
No 181
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=44.15 E-value=23 Score=31.91 Aligned_cols=48 Identities=21% Similarity=0.274 Sum_probs=38.0
Q ss_pred HHHHHHHhcCCCCCcEEEEcCCCCchHHHHHHHHHccCCCeeEccccHH
Q 022972 160 QFLSKVEEKLPKDTDLIVACQKGLRSLAACELLYNAGYRNLFWVQGGLE 208 (289)
Q Consensus 160 ~f~~~~~~~l~k~~~IVvyC~~G~RS~~aa~~L~~~G~~nV~~L~GG~~ 208 (289)
+.+.++.....++.+++|||++-..+..++..|...|+. +..+.|++.
T Consensus 264 ~~l~~~l~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~~~-~~~~h~~~~ 311 (417)
T 2i4i_A 264 SFLLDLLNATGKDSLTLVFVETKKGADSLEDFLYHEGYA-CTSIHGDRS 311 (417)
T ss_dssp HHHHHHHHTCCTTCEEEEECSSHHHHHHHHHHHHHTTCC-EEEECTTSC
T ss_pred HHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHHCCCC-eeEecCCCC
Confidence 444455545666778999999877888999999999995 989999864
No 182
>4i1u_A Dephospho-COA kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.05A {Burkholderia vietnamiensis} PDB: 4i1v_A*
Probab=44.14 E-value=5.4 Score=34.30 Aligned_cols=35 Identities=14% Similarity=-0.056 Sum_probs=26.3
Q ss_pred CccccccccccccchhhhhcccchhcCCC--CcchhHHH
Q 022972 223 LKFAGIGGLSEFLGYTSQLCYPFLHISYP--STSFSKMT 259 (289)
Q Consensus 223 ~~~~~~~G~t~~~Gkt~~l~~l~~~~g~~--~~~~~~~~ 259 (289)
....|++|.- |+|||++.+.| ++.|+| .+--.+|-
T Consensus 9 ~~~iglTGgi-gsGKStv~~~l-~~~g~~vidaD~ia~~ 45 (210)
T 4i1u_A 9 MYAIGLTGGI-GSGKTTVADLF-AARGASLVDTDLIAHR 45 (210)
T ss_dssp CCEEEEECCT-TSCHHHHHHHH-HHTTCEEEEHHHHHHH
T ss_pred eeEEEEECCC-CCCHHHHHHHH-HHCCCcEEECcHHHHH
Confidence 3455888888 59999999999 669997 55555543
No 183
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=43.62 E-value=6 Score=36.64 Aligned_cols=25 Identities=16% Similarity=0.064 Sum_probs=21.5
Q ss_pred ccccccccccccchhhhhcccchhcC
Q 022972 224 KFAGIGGLSEFLGYTSQLCYPFLHIS 249 (289)
Q Consensus 224 ~~~~~~G~t~~~Gkt~~l~~l~~~~g 249 (289)
+..++.|.|| +|||++-..||++.|
T Consensus 41 ~lIvI~GPTg-sGKTtLa~~LA~~l~ 65 (339)
T 3a8t_A 41 KLLVLMGATG-TGKSRLSIDLAAHFP 65 (339)
T ss_dssp EEEEEECSTT-SSHHHHHHHHHTTSC
T ss_pred ceEEEECCCC-CCHHHHHHHHHHHCC
Confidence 4789999995 999999999977665
No 184
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=42.56 E-value=4.8 Score=33.78 Aligned_cols=27 Identities=11% Similarity=-0.130 Sum_probs=22.0
Q ss_pred ccccccccccccchhhhhcccchhcCCC
Q 022972 224 KFAGIGGLSEFLGYTSQLCYPFLHISYP 251 (289)
Q Consensus 224 ~~~~~~G~t~~~Gkt~~l~~l~~~~g~~ 251 (289)
...++.|.. |+|||++.+.|+++.|++
T Consensus 6 ~~I~l~G~~-GsGKsT~a~~La~~l~~~ 32 (217)
T 3be4_A 6 HNLILIGAP-GSGKGTQCEFIKKEYGLA 32 (217)
T ss_dssp CEEEEEECT-TSSHHHHHHHHHHHHCCE
T ss_pred eEEEEECCC-CCCHHHHHHHHHHHhCce
Confidence 346777888 599999999997777986
No 185
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=41.26 E-value=6.3 Score=32.10 Aligned_cols=22 Identities=23% Similarity=-0.005 Sum_probs=18.3
Q ss_pred ccccccccccccchhhhhcccch
Q 022972 224 KFAGIGGLSEFLGYTSQLCYPFL 246 (289)
Q Consensus 224 ~~~~~~G~t~~~Gkt~~l~~l~~ 246 (289)
.+.++.|.+| +|||++++.|+.
T Consensus 8 ~ii~l~Gp~G-sGKSTl~~~L~~ 29 (205)
T 3tr0_A 8 NLFIISAPSG-AGKTSLVRALVK 29 (205)
T ss_dssp CEEEEECCTT-SCHHHHHHHHHH
T ss_pred cEEEEECcCC-CCHHHHHHHHHh
Confidence 4678889984 999999999844
No 186
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=40.67 E-value=8.2 Score=32.67 Aligned_cols=27 Identities=22% Similarity=-0.062 Sum_probs=22.1
Q ss_pred ccccccccccccchhhhhcccchhcCCC
Q 022972 224 KFAGIGGLSEFLGYTSQLCYPFLHISYP 251 (289)
Q Consensus 224 ~~~~~~G~t~~~Gkt~~l~~l~~~~g~~ 251 (289)
....++|.+| +|||.+.+.++++.+.|
T Consensus 40 ~~vll~G~~G-tGKT~la~~la~~~~~~ 66 (262)
T 2qz4_A 40 KGALLLGPPG-CGKTLLAKAVATEAQVP 66 (262)
T ss_dssp CEEEEESCTT-SSHHHHHHHHHHHHTCC
T ss_pred ceEEEECCCC-CCHHHHHHHHHHHhCCC
Confidence 4457889984 99999999997777876
No 187
>3d3k_A Enhancer of mRNA-decapping protein 3; HEDC3, phosphoprotein, protein binding; 2.20A {Homo sapiens}
Probab=40.39 E-value=34 Score=30.12 Aligned_cols=30 Identities=10% Similarity=0.249 Sum_probs=23.9
Q ss_pred CcEEEEcCCCC---chHHHHHHHHHccCCCeeEc
Q 022972 173 TDLIVACQKGL---RSLAACELLYNAGYRNLFWV 203 (289)
Q Consensus 173 ~~IVvyC~~G~---RS~~aa~~L~~~G~~nV~~L 203 (289)
++|+|+|..|+ ....+|+.|...||+ |.++
T Consensus 86 ~~vlVlcG~GNNGGDGlv~AR~L~~~G~~-V~v~ 118 (259)
T 3d3k_A 86 PTVALLCGPHVKGAQGISCGRHLANHDVQ-VILF 118 (259)
T ss_dssp CEEEEEECSSHHHHHHHHHHHHHHHTTCE-EEEE
T ss_pred CeEEEEECCCCCHHHHHHHHHHHHHCCCe-EEEE
Confidence 47999997555 678899999999996 6543
No 188
>3tsm_A IGPS, indole-3-glycerol phosphate synthase; structural genomics, ssgcid, seattle structural GE center for infectious disease, lyase; 2.15A {Brucella melitensis} SCOP: c.1.2.0
Probab=40.03 E-value=94 Score=27.54 Aligned_cols=41 Identities=17% Similarity=0.302 Sum_probs=30.6
Q ss_pred ccHHHHHHHHhcCCCCCcEEEEcCCCCchHHHHHHHHHccCCC
Q 022972 157 YNKQFLSKVEEKLPKDTDLIVACQKGLRSLAACELLYNAGYRN 199 (289)
Q Consensus 157 ~~~~f~~~~~~~l~k~~~IVvyC~~G~RS~~aa~~L~~~G~~n 199 (289)
...+...++...+|++ ++++|.+|..+..-+..+...|++-
T Consensus 205 ~dl~~~~~L~~~ip~~--~~vIaesGI~t~edv~~l~~~Ga~g 245 (272)
T 3tsm_A 205 VNLAVSERLAKMAPSD--RLLVGESGIFTHEDCLRLEKSGIGT 245 (272)
T ss_dssp BCTHHHHHHHHHSCTT--SEEEEESSCCSHHHHHHHHTTTCCE
T ss_pred CChHHHHHHHHhCCCC--CcEEEECCCCCHHHHHHHHHcCCCE
Confidence 3445566666667754 5667899999999999999999973
No 189
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=40.01 E-value=10 Score=32.38 Aligned_cols=25 Identities=16% Similarity=-0.100 Sum_probs=20.8
Q ss_pred ccccccccccchhhhhcccchhcCCC
Q 022972 226 AGIGGLSEFLGYTSQLCYPFLHISYP 251 (289)
Q Consensus 226 ~~~~G~t~~~Gkt~~l~~l~~~~g~~ 251 (289)
..++|.+| +|||.+.+.++++.+.|
T Consensus 47 vll~G~~G-tGKT~la~~la~~~~~~ 71 (268)
T 2r62_A 47 VLLVGPPG-TGKTLLAKAVAGEAHVP 71 (268)
T ss_dssp CCCBCSSC-SSHHHHHHHHHHHHTCC
T ss_pred EEEECCCC-CcHHHHHHHHHHHhCCC
Confidence 56889984 99999999997776765
No 190
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=39.91 E-value=6.9 Score=32.24 Aligned_cols=29 Identities=21% Similarity=0.170 Sum_probs=21.7
Q ss_pred CCCccccccccccccchhhhhcccchhc-CC
Q 022972 221 QPLKFAGIGGLSEFLGYTSQLCYPFLHI-SY 250 (289)
Q Consensus 221 ~~~~~~~~~G~t~~~Gkt~~l~~l~~~~-g~ 250 (289)
.+....++.|.+ |+|||++.+.|++.. |+
T Consensus 19 ~~~~~i~i~G~~-GsGKSTl~~~L~~~~~~~ 48 (207)
T 2qt1_A 19 SKTFIIGISGVT-NSGKTTLAKNLQKHLPNC 48 (207)
T ss_dssp CCCEEEEEEEST-TSSHHHHHHHHHTTSTTE
T ss_pred CCCeEEEEECCC-CCCHHHHHHHHHHhcCCc
Confidence 345677899998 599999999994443 44
No 191
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=39.46 E-value=10 Score=35.56 Aligned_cols=28 Identities=11% Similarity=0.114 Sum_probs=23.7
Q ss_pred CccccccccccccchhhhhcccchhcCCC
Q 022972 223 LKFAGIGGLSEFLGYTSQLCYPFLHISYP 251 (289)
Q Consensus 223 ~~~~~~~G~t~~~Gkt~~l~~l~~~~g~~ 251 (289)
..+..+.|.+| +|||++.++|+++.||+
T Consensus 258 ~~lIil~G~pG-SGKSTla~~L~~~~~~~ 285 (416)
T 3zvl_A 258 PEVVVAVGFPG-AGKSTFIQEHLVSAGYV 285 (416)
T ss_dssp CCEEEEESCTT-SSHHHHHHHHTGGGTCE
T ss_pred CEEEEEECCCC-CCHHHHHHHHHHhcCcE
Confidence 45678999995 99999999997777886
No 192
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=39.32 E-value=8.9 Score=35.19 Aligned_cols=26 Identities=15% Similarity=-0.119 Sum_probs=21.5
Q ss_pred CccccccccccccchhhhhcccchhcC
Q 022972 223 LKFAGIGGLSEFLGYTSQLCYPFLHIS 249 (289)
Q Consensus 223 ~~~~~~~G~t~~~Gkt~~l~~l~~~~g 249 (289)
.+..++.|.|| +|||++.+.||++.+
T Consensus 10 ~~~i~i~Gptg-sGKt~la~~La~~~~ 35 (316)
T 3foz_A 10 PKAIFLMGPTA-SGKTALAIELRKILP 35 (316)
T ss_dssp CEEEEEECCTT-SCHHHHHHHHHHHSC
T ss_pred CcEEEEECCCc-cCHHHHHHHHHHhCC
Confidence 35678999995 999999999976655
No 193
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=39.07 E-value=8.2 Score=33.33 Aligned_cols=28 Identities=18% Similarity=0.102 Sum_probs=23.2
Q ss_pred CccccccccccccchhhhhcccchhcCCC
Q 022972 223 LKFAGIGGLSEFLGYTSQLCYPFLHISYP 251 (289)
Q Consensus 223 ~~~~~~~G~t~~~Gkt~~l~~l~~~~g~~ 251 (289)
.....++|.+| +|||.+.+.++++.|+|
T Consensus 64 ~~~vLl~G~~G-tGKT~la~~ia~~~~~~ 91 (272)
T 1d2n_A 64 LVSVLLEGPPH-SGKTALAAKIAEESNFP 91 (272)
T ss_dssp EEEEEEECSTT-SSHHHHHHHHHHHHTCS
T ss_pred CeEEEEECCCC-CcHHHHHHHHHHHhCCC
Confidence 34567889984 99999999997777887
No 194
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=38.51 E-value=8.4 Score=31.69 Aligned_cols=26 Identities=19% Similarity=0.103 Sum_probs=21.2
Q ss_pred CCccccccccccccchhhhhcccchhc
Q 022972 222 PLKFAGIGGLSEFLGYTSQLCYPFLHI 248 (289)
Q Consensus 222 ~~~~~~~~G~t~~~Gkt~~l~~l~~~~ 248 (289)
+-....+.|.+| .|||++.+.|+...
T Consensus 24 ~g~~i~l~G~sG-sGKSTl~~~La~~l 49 (200)
T 3uie_A 24 KGCVIWVTGLSG-SGKSTLACALNQML 49 (200)
T ss_dssp CCEEEEEECSTT-SSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCC-CCHHHHHHHHHHHH
Confidence 446778899995 99999999996655
No 195
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=38.34 E-value=17 Score=30.33 Aligned_cols=37 Identities=14% Similarity=0.088 Sum_probs=31.3
Q ss_pred CCCcEEEEcCCCCchHHHHHHHHHccCCCeeEccccHH
Q 022972 171 KDTDLIVACQKGLRSLAACELLYNAGYRNLFWVQGGLE 208 (289)
Q Consensus 171 k~~~IVvyC~~G~RS~~aa~~L~~~G~~nV~~L~GG~~ 208 (289)
++.+++|||++-..+..++..|...|+. +..+.|++.
T Consensus 30 ~~~~~lVF~~~~~~~~~l~~~L~~~~~~-~~~lhg~~~ 66 (212)
T 3eaq_A 30 SPDRAMVFTRTKAETEEIAQGLLRLGHP-AQALHGDLS 66 (212)
T ss_dssp CCSCEEEECSSHHHHHHHHHHHHHHTCC-EEEECSSSC
T ss_pred CCCeEEEEeCCHHHHHHHHHHHHHcCCC-EEEEECCCC
Confidence 3568999999877788899999999996 889999954
No 196
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=38.07 E-value=6.6 Score=34.19 Aligned_cols=27 Identities=11% Similarity=-0.047 Sum_probs=22.6
Q ss_pred ccccccccccccchhhhhcccchhcCCC
Q 022972 224 KFAGIGGLSEFLGYTSQLCYPFLHISYP 251 (289)
Q Consensus 224 ~~~~~~G~t~~~Gkt~~l~~l~~~~g~~ 251 (289)
....+.|.+| +|||++.+.|+++.|++
T Consensus 10 ~~i~i~G~~G-sGKsTla~~la~~lg~~ 36 (233)
T 3r20_A 10 LVVAVDGPAG-TGKSSVSRGLARALGAR 36 (233)
T ss_dssp CEEEEECCTT-SSHHHHHHHHHHHHTCE
T ss_pred eEEEEECCCC-CCHHHHHHHHHHHhCCC
Confidence 4568889984 99999999997777985
No 197
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=37.69 E-value=9.5 Score=32.90 Aligned_cols=27 Identities=15% Similarity=-0.242 Sum_probs=22.1
Q ss_pred ccccccccccccchhhhhcccchhcCCC
Q 022972 224 KFAGIGGLSEFLGYTSQLCYPFLHISYP 251 (289)
Q Consensus 224 ~~~~~~G~t~~~Gkt~~l~~l~~~~g~~ 251 (289)
.-..++|.+ |+|||.+.+.+|++.+.+
T Consensus 52 ~~~ll~G~~-GtGKT~la~~la~~~~~~ 78 (285)
T 3h4m_A 52 KGILLYGPP-GTGKTLLAKAVATETNAT 78 (285)
T ss_dssp SEEEEESSS-SSSHHHHHHHHHHHTTCE
T ss_pred CeEEEECCC-CCcHHHHHHHHHHHhCCC
Confidence 446788888 499999999997777775
No 198
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=37.59 E-value=8.4 Score=35.47 Aligned_cols=25 Identities=20% Similarity=0.222 Sum_probs=20.5
Q ss_pred ccccccccccccchhhhhcccchhcC
Q 022972 224 KFAGIGGLSEFLGYTSQLCYPFLHIS 249 (289)
Q Consensus 224 ~~~~~~G~t~~~Gkt~~l~~l~~~~g 249 (289)
+..++.|.|| +|||++...||++.+
T Consensus 4 ~~i~i~Gptg-sGKt~la~~La~~~~ 28 (322)
T 3exa_A 4 KLVAIVGPTA-VGKTKTSVMLAKRLN 28 (322)
T ss_dssp EEEEEECCTT-SCHHHHHHHHHHTTT
T ss_pred cEEEEECCCc-CCHHHHHHHHHHhCc
Confidence 4568899995 999999999966554
No 199
>4fak_A Ribosomal RNA large subunit methyltransferase H; alpha/beta methyltransferase rossmann fold, rRNA methylation rRNA, ribosomal protein; HET: SAM PG4; 1.70A {Staphylococcus aureus} PDB: 1vh0_A
Probab=37.53 E-value=30 Score=28.53 Aligned_cols=44 Identities=20% Similarity=0.338 Sum_probs=32.1
Q ss_pred HHHHhcCCCCCcEEEEcCCCC--chHHHHHHHHH---ccCCCeeEcccc
Q 022972 163 SKVEEKLPKDTDLIVACQKGL--RSLAACELLYN---AGYRNLFWVQGG 206 (289)
Q Consensus 163 ~~~~~~l~k~~~IVvyC~~G~--RS~~aa~~L~~---~G~~nV~~L~GG 206 (289)
+.+.+.++++..+|+.|-.|. .|...|..|.. .|.+++..+-||
T Consensus 65 ~~il~~i~~~~~vI~LD~~Gk~~sS~~fA~~l~~~~~~g~~~i~FvIGG 113 (163)
T 4fak_A 65 QRILAKIKPQSTVITLEIQGKMLSSEGLAQELNQRMTQGQSDFVFVIGG 113 (163)
T ss_dssp HHHHHTCCTTSEEEEEEEEEEECCHHHHHHHHHHHHHTTCCEEEEEECB
T ss_pred HHHHHhCCCCCEEEEEcCCCCcCCHHHHHHHHHHHHhcCCcceEEEEEC
Confidence 344556788777888886555 68888888876 577778777777
No 200
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=37.25 E-value=8.2 Score=31.43 Aligned_cols=20 Identities=30% Similarity=0.179 Sum_probs=16.7
Q ss_pred cccccccccccchhhhhcccc
Q 022972 225 FAGIGGLSEFLGYTSQLCYPF 245 (289)
Q Consensus 225 ~~~~~G~t~~~Gkt~~l~~l~ 245 (289)
..++.|.+| .|||++++.|+
T Consensus 3 ii~l~GpsG-aGKsTl~~~L~ 22 (186)
T 3a00_A 3 PIVISGPSG-TGKSTLLKKLF 22 (186)
T ss_dssp CEEEESSSS-SSHHHHHHHHH
T ss_pred EEEEECCCC-CCHHHHHHHHH
Confidence 457888884 99999999985
No 201
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=36.71 E-value=13 Score=32.05 Aligned_cols=26 Identities=15% Similarity=-0.037 Sum_probs=21.2
Q ss_pred CCccccccccccccchhhhhcccchhc
Q 022972 222 PLKFAGIGGLSEFLGYTSQLCYPFLHI 248 (289)
Q Consensus 222 ~~~~~~~~G~t~~~Gkt~~l~~l~~~~ 248 (289)
...+.++.|.. |+|||++.+.|++..
T Consensus 23 ~~~~I~ieG~~-GsGKST~~~~L~~~l 48 (263)
T 1p5z_B 23 RIKKISIEGNI-AAGKSTFVNILKQLC 48 (263)
T ss_dssp CCEEEEEECST-TSSHHHHHTTTGGGC
T ss_pred CceEEEEECCC-CCCHHHHHHHHHHhc
Confidence 34678899998 499999999996554
No 202
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=36.70 E-value=27 Score=28.73 Aligned_cols=36 Identities=19% Similarity=0.240 Sum_probs=30.6
Q ss_pred CCcEEEEcCCCCchHHHHHHHHHccCCCeeEccccHH
Q 022972 172 DTDLIVACQKGLRSLAACELLYNAGYRNLFWVQGGLE 208 (289)
Q Consensus 172 ~~~IVvyC~~G~RS~~aa~~L~~~G~~nV~~L~GG~~ 208 (289)
+.+++|||++-..+..++..|...|++ +..+.|++.
T Consensus 54 ~~~~lVF~~~~~~~~~l~~~L~~~g~~-~~~lhg~~~ 89 (191)
T 2p6n_A 54 PPPVLIFAEKKADVDAIHEYLLLKGVE-AVAIHGGKD 89 (191)
T ss_dssp CSCEEEECSCHHHHHHHHHHHHHHTCC-EEEECTTSC
T ss_pred CCCEEEEECCHHHHHHHHHHHHHcCCc-EEEEeCCCC
Confidence 347999999877888999999999996 888999853
No 203
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=36.57 E-value=7.6 Score=31.79 Aligned_cols=23 Identities=13% Similarity=0.031 Sum_probs=19.0
Q ss_pred ccccccccccccchhhhhcccchh
Q 022972 224 KFAGIGGLSEFLGYTSQLCYPFLH 247 (289)
Q Consensus 224 ~~~~~~G~t~~~Gkt~~l~~l~~~ 247 (289)
...++.|.. |+|||++.+.|+++
T Consensus 10 ~~I~l~G~~-GsGKsT~~~~L~~~ 32 (215)
T 1nn5_A 10 ALIVLEGVD-RAGKSTQSRKLVEA 32 (215)
T ss_dssp CEEEEEEST-TSSHHHHHHHHHHH
T ss_pred cEEEEECCC-CCCHHHHHHHHHHH
Confidence 467888998 49999999999554
No 204
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=36.50 E-value=8.8 Score=32.75 Aligned_cols=25 Identities=16% Similarity=-0.110 Sum_probs=20.8
Q ss_pred ccccccccccchhhhhcccchhcCCC
Q 022972 226 AGIGGLSEFLGYTSQLCYPFLHISYP 251 (289)
Q Consensus 226 ~~~~G~t~~~Gkt~~l~~l~~~~g~~ 251 (289)
..+.|.+| +|||.+.|.++.+.+.|
T Consensus 48 vll~G~~G-tGKT~la~~la~~~~~~ 72 (257)
T 1lv7_A 48 VLMVGPPG-TGKTLLAKAIAGEAKVP 72 (257)
T ss_dssp EEEECCTT-SCHHHHHHHHHHHHTCC
T ss_pred EEEECcCC-CCHHHHHHHHHHHcCCC
Confidence 67889994 99999999997766755
No 205
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=36.02 E-value=5.8 Score=32.58 Aligned_cols=22 Identities=14% Similarity=-0.028 Sum_probs=17.5
Q ss_pred cccccccccccchhhhhcccchh
Q 022972 225 FAGIGGLSEFLGYTSQLCYPFLH 247 (289)
Q Consensus 225 ~~~~~G~t~~~Gkt~~l~~l~~~ 247 (289)
+.++.|.+ |+|||++.+.|++.
T Consensus 2 ~I~i~G~~-GsGKsTl~~~L~~~ 23 (214)
T 1gtv_A 2 LIAIEGVD-GAGKRTLVEKLSGA 23 (214)
T ss_dssp EEEEEEEE-EEEHHHHHHHHHHH
T ss_pred EEEEEcCC-CCCHHHHHHHHHHH
Confidence 45778888 49999999998544
No 206
>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}
Probab=35.95 E-value=6.9 Score=33.67 Aligned_cols=27 Identities=7% Similarity=-0.349 Sum_probs=23.2
Q ss_pred ccccccccccccchhhhhcccchhcCCC
Q 022972 224 KFAGIGGLSEFLGYTSQLCYPFLHISYP 251 (289)
Q Consensus 224 ~~~~~~G~t~~~Gkt~~l~~l~~~~g~~ 251 (289)
...+++|.. |+|||++-+.||++.|||
T Consensus 15 ~iI~i~g~~-gsGk~~i~~~la~~lg~~ 41 (223)
T 3hdt_A 15 LIITIEREY-GSGGRIVGKKLAEELGIH 41 (223)
T ss_dssp EEEEEEECT-TSCHHHHHHHHHHHHTCE
T ss_pred eEEEEeCCC-CCCHHHHHHHHHHHcCCc
Confidence 467888988 599999999997777997
No 207
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=35.81 E-value=9.2 Score=35.06 Aligned_cols=26 Identities=12% Similarity=-0.127 Sum_probs=21.7
Q ss_pred ccccccccccccchhhhhcccchhcCC
Q 022972 224 KFAGIGGLSEFLGYTSQLCYPFLHISY 250 (289)
Q Consensus 224 ~~~~~~G~t~~~Gkt~~l~~l~~~~g~ 250 (289)
+..++.|.|| +|||++-+.||++.|.
T Consensus 6 ~~i~i~GptG-sGKTtla~~La~~l~~ 31 (323)
T 3crm_A 6 PAIFLMGPTA-AGKTDLAMALADALPC 31 (323)
T ss_dssp EEEEEECCTT-SCHHHHHHHHHHHSCE
T ss_pred cEEEEECCCC-CCHHHHHHHHHHHcCC
Confidence 4678999995 9999999999777664
No 208
>1d5r_A Phosphoinositide phosphotase PTEN; C2 domain, phosphotidylinositol, hydrolase; HET: TLA; 2.10A {Homo sapiens} SCOP: b.7.1.1 c.45.1.1
Probab=35.63 E-value=60 Score=29.19 Aligned_cols=29 Identities=21% Similarity=0.392 Sum_probs=17.9
Q ss_pred HHHHHHHHhcC--CCCCcEEEEcCCCC-chHH
Q 022972 159 KQFLSKVEEKL--PKDTDLIVACQKGL-RSLA 187 (289)
Q Consensus 159 ~~f~~~~~~~l--~k~~~IVvyC~~G~-RS~~ 187 (289)
.++.+.+.+.+ +++.+|+|+|..|. |+..
T Consensus 96 ~~~~~~i~~~l~~~~~~~VlVHC~aG~gRTGt 127 (324)
T 1d5r_A 96 KPFCEDLDQWLSEDDNHVAAIHCKAGKGRTGV 127 (324)
T ss_dssp HHHHHHHHHHHTTTSCSEEEEECSSSSHHHHH
T ss_pred HHHHHHHHHHHHhcCCCeEEEECCCCCChhHH
Confidence 34555554433 34568999998665 7654
No 209
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=35.52 E-value=10 Score=30.52 Aligned_cols=25 Identities=16% Similarity=-0.169 Sum_probs=19.9
Q ss_pred CCccccccccccccchhhhhcccchh
Q 022972 222 PLKFAGIGGLSEFLGYTSQLCYPFLH 247 (289)
Q Consensus 222 ~~~~~~~~G~t~~~Gkt~~l~~l~~~ 247 (289)
+-.+.++.|.. |+|||++.+.|++.
T Consensus 12 ~~~~i~l~G~~-GsGKsT~~~~L~~~ 36 (186)
T 2yvu_A 12 KGIVVWLTGLP-GSGKTTIATRLADL 36 (186)
T ss_dssp CCEEEEEECCT-TSSHHHHHHHHHHH
T ss_pred CCcEEEEEcCC-CCCHHHHHHHHHHH
Confidence 34567889998 49999999998544
No 210
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=35.33 E-value=10 Score=29.72 Aligned_cols=22 Identities=14% Similarity=-0.141 Sum_probs=17.8
Q ss_pred cccccccccccchhhhhcccchh
Q 022972 225 FAGIGGLSEFLGYTSQLCYPFLH 247 (289)
Q Consensus 225 ~~~~~G~t~~~Gkt~~l~~l~~~ 247 (289)
...+.|.+ |+|||.+.+.++++
T Consensus 45 ~vll~G~~-G~GKT~la~~~~~~ 66 (187)
T 2p65_A 45 NPILLGDP-GVGKTAIVEGLAIK 66 (187)
T ss_dssp EEEEESCG-GGCHHHHHHHHHHH
T ss_pred ceEEECCC-CCCHHHHHHHHHHH
Confidence 44788998 49999999998555
No 211
>2l2q_A PTS system, cellobiose-specific IIB component (CE; cellobiose-specific phosphotransferase IIB component, struct genomics; NMR {Borrelia burgdorferi}
Probab=35.06 E-value=18 Score=27.29 Aligned_cols=28 Identities=7% Similarity=0.311 Sum_probs=18.7
Q ss_pred CCCcEEEEcCCCCchHHHHHHH----HHccCC
Q 022972 171 KDTDLIVACQKGLRSLAACELL----YNAGYR 198 (289)
Q Consensus 171 k~~~IVvyC~~G~RS~~aa~~L----~~~G~~ 198 (289)
+.-+|++.|.+|+.+..++..+ .+.|++
T Consensus 3 ~~mkIlvvC~~G~~TSll~~kl~~~~~~~gi~ 34 (109)
T 2l2q_A 3 GSMNILLVCGAGMSTSMLVQRIEKYAKSKNIN 34 (109)
T ss_dssp CCEEEEEESSSSCSSCHHHHHHHHHHHHHTCS
T ss_pred CceEEEEECCChHhHHHHHHHHHHHHHHCCCC
Confidence 3346999999998544666544 456774
No 212
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=35.04 E-value=11 Score=29.55 Aligned_cols=23 Identities=13% Similarity=-0.153 Sum_probs=18.2
Q ss_pred ccccccccccccchhhhhcccchh
Q 022972 224 KFAGIGGLSEFLGYTSQLCYPFLH 247 (289)
Q Consensus 224 ~~~~~~G~t~~~Gkt~~l~~l~~~ 247 (289)
....++|.+ |+|||.+.+.++++
T Consensus 44 ~~~ll~G~~-G~GKT~l~~~~~~~ 66 (195)
T 1jbk_A 44 NNPVLIGEP-GVGKTAIVEGLAQR 66 (195)
T ss_dssp CEEEEECCT-TSCHHHHHHHHHHH
T ss_pred CceEEECCC-CCCHHHHHHHHHHH
Confidence 345788988 49999999998555
No 213
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=35.00 E-value=8.7 Score=36.52 Aligned_cols=26 Identities=15% Similarity=0.072 Sum_probs=20.8
Q ss_pred CccccccccccccchhhhhcccchhcC
Q 022972 223 LKFAGIGGLSEFLGYTSQLCYPFLHIS 249 (289)
Q Consensus 223 ~~~~~~~G~t~~~Gkt~~l~~l~~~~g 249 (289)
.+..++.|.|| +|||++.+.||++.+
T Consensus 2 ~~~i~i~Gptg-sGKttla~~La~~~~ 27 (409)
T 3eph_A 2 KKVIVIAGTTG-VGKSQLSIQLAQKFN 27 (409)
T ss_dssp CEEEEEEECSS-SSHHHHHHHHHHHHT
T ss_pred CcEEEEECcch-hhHHHHHHHHHHHCC
Confidence 35678999995 999999999966544
No 214
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=34.89 E-value=9.6 Score=35.21 Aligned_cols=25 Identities=16% Similarity=-0.064 Sum_probs=21.0
Q ss_pred ccccccccccccchhhhhcccchhcC
Q 022972 224 KFAGIGGLSEFLGYTSQLCYPFLHIS 249 (289)
Q Consensus 224 ~~~~~~G~t~~~Gkt~~l~~l~~~~g 249 (289)
...++.|.|| +|||++.+.||+..|
T Consensus 8 ~lI~I~Gptg-SGKTtla~~La~~l~ 32 (340)
T 3d3q_A 8 FLIVIVGPTA-SGKTELSIEVAKKFN 32 (340)
T ss_dssp EEEEEECSTT-SSHHHHHHHHHHHTT
T ss_pred ceEEEECCCc-CcHHHHHHHHHHHcC
Confidence 4678999995 999999999966655
No 215
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=34.33 E-value=13 Score=32.87 Aligned_cols=28 Identities=21% Similarity=0.033 Sum_probs=22.3
Q ss_pred Cccccccccccccchhhhhcccchhc--CCC
Q 022972 223 LKFAGIGGLSEFLGYTSQLCYPFLHI--SYP 251 (289)
Q Consensus 223 ~~~~~~~G~t~~~Gkt~~l~~l~~~~--g~~ 251 (289)
.....+.|.+| +|||++.+.|+++. ++.
T Consensus 33 ~~livl~G~sG-sGKSTla~~L~~~~~~~~~ 62 (287)
T 1gvn_B 33 PTAFLLGGQPG-SGKTSLRSAIFEETQGNVI 62 (287)
T ss_dssp CEEEEEECCTT-SCTHHHHHHHHHHTTTCCE
T ss_pred CeEEEEECCCC-CCHHHHHHHHHHHhCCCeE
Confidence 46788999995 99999999996555 554
No 216
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=34.27 E-value=9.5 Score=32.57 Aligned_cols=28 Identities=11% Similarity=-0.006 Sum_probs=21.5
Q ss_pred CCccccccccccccchhhhhcccchhcCC
Q 022972 222 PLKFAGIGGLSEFLGYTSQLCYPFLHISY 250 (289)
Q Consensus 222 ~~~~~~~~G~t~~~Gkt~~l~~l~~~~g~ 250 (289)
+-...++.|.+ |+|||++++.++...|.
T Consensus 24 ~g~iigI~G~~-GsGKSTl~k~L~~~lG~ 51 (245)
T 2jeo_A 24 RPFLIGVSGGT-ASGKSTVCEKIMELLGQ 51 (245)
T ss_dssp CSEEEEEECST-TSSHHHHHHHHHHHHTG
T ss_pred CCEEEEEECCC-CCCHHHHHHHHHHHhch
Confidence 33567888888 49999999999544574
No 217
>3d3j_A Enhancer of mRNA-decapping protein 3; HEDC3, phosphoprotein, protein binding; 2.80A {Homo sapiens}
Probab=34.14 E-value=28 Score=31.46 Aligned_cols=30 Identities=10% Similarity=0.249 Sum_probs=24.0
Q ss_pred CcEEEEcCCCC---chHHHHHHHHHccCCCeeEc
Q 022972 173 TDLIVACQKGL---RSLAACELLYNAGYRNLFWV 203 (289)
Q Consensus 173 ~~IVvyC~~G~---RS~~aa~~L~~~G~~nV~~L 203 (289)
.+|+|+|..|+ ....+|+.|...||+ |.++
T Consensus 133 ~~vlVlcG~GNNGGDGlv~AR~L~~~G~~-V~V~ 165 (306)
T 3d3j_A 133 PTVALLCGPHVKGAQGISCGRHLANHDVQ-VILF 165 (306)
T ss_dssp CEEEEEECSSHHHHHHHHHHHHHHHTTCE-EEEE
T ss_pred CeEEEEECCCCCHHHHHHHHHHHHHCCCc-EEEE
Confidence 47999997555 678899999999996 6543
No 218
>2o8n_A APOA-I binding protein; rossmann fold, protein binding; 2.00A {Mus musculus} PDB: 2dg2_A
Probab=33.94 E-value=28 Score=30.87 Aligned_cols=30 Identities=23% Similarity=0.330 Sum_probs=24.2
Q ss_pred CcEEEEcCCCC---chHHHHHHHHHccCCCeeEc
Q 022972 173 TDLIVACQKGL---RSLAACELLYNAGYRNLFWV 203 (289)
Q Consensus 173 ~~IVvyC~~G~---RS~~aa~~L~~~G~~nV~~L 203 (289)
++|+|+|..|+ ....+|+.|...||+ |.++
T Consensus 80 ~~VlVlcG~GNNGGDGlv~AR~L~~~G~~-V~V~ 112 (265)
T 2o8n_A 80 PTVLVICGPGNNGGDGLVCARHLKLFGYQ-PTIY 112 (265)
T ss_dssp CEEEEEECSSHHHHHHHHHHHHHHHTTCE-EEEE
T ss_pred CeEEEEECCCCCHHHHHHHHHHHHHCCCc-EEEE
Confidence 58999997555 678899999999996 6654
No 219
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=33.80 E-value=9.8 Score=31.48 Aligned_cols=22 Identities=23% Similarity=0.176 Sum_probs=18.1
Q ss_pred ccccccccccccchhhhhcccch
Q 022972 224 KFAGIGGLSEFLGYTSQLCYPFL 246 (289)
Q Consensus 224 ~~~~~~G~t~~~Gkt~~l~~l~~ 246 (289)
+..++.|.+| .|||++++.|+.
T Consensus 5 ~~i~lvGpsG-aGKSTLl~~L~~ 26 (198)
T 1lvg_A 5 RPVVLSGPSG-AGKSTLLKKLFQ 26 (198)
T ss_dssp CCEEEECCTT-SSHHHHHHHHHH
T ss_pred CEEEEECCCC-CCHHHHHHHHHh
Confidence 4568889995 999999999843
No 220
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=33.71 E-value=11 Score=32.73 Aligned_cols=28 Identities=18% Similarity=-0.218 Sum_probs=22.3
Q ss_pred CccccccccccccchhhhhcccchhcCCC
Q 022972 223 LKFAGIGGLSEFLGYTSQLCYPFLHISYP 251 (289)
Q Consensus 223 ~~~~~~~G~t~~~Gkt~~l~~l~~~~g~~ 251 (289)
.....+.|.+| +|||.+.+.++++.+.+
T Consensus 54 ~~~vll~Gp~G-tGKT~la~~la~~~~~~ 81 (297)
T 3b9p_A 54 AKGLLLFGPPG-NGKTLLARAVATECSAT 81 (297)
T ss_dssp CSEEEEESSSS-SCHHHHHHHHHHHTTCE
T ss_pred CCeEEEECcCC-CCHHHHHHHHHHHhCCC
Confidence 34567889984 99999999997776754
No 221
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=33.32 E-value=14 Score=32.83 Aligned_cols=27 Identities=19% Similarity=0.064 Sum_probs=22.3
Q ss_pred ccccccccccccchhhhhcccchhcCCC
Q 022972 224 KFAGIGGLSEFLGYTSQLCYPFLHISYP 251 (289)
Q Consensus 224 ~~~~~~G~t~~~Gkt~~l~~l~~~~g~~ 251 (289)
....++|.+| +|||.+.+.+++..+.|
T Consensus 56 ~~vll~G~~G-tGKT~la~~ia~~~~~~ 82 (338)
T 3pfi_A 56 DHILFSGPAG-LGKTTLANIISYEMSAN 82 (338)
T ss_dssp CCEEEECSTT-SSHHHHHHHHHHHTTCC
T ss_pred CeEEEECcCC-CCHHHHHHHHHHHhCCC
Confidence 3467889994 99999999997777776
No 222
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=32.84 E-value=19 Score=30.33 Aligned_cols=26 Identities=19% Similarity=-0.194 Sum_probs=20.7
Q ss_pred CCCccccccccccccchhhhhcccchh
Q 022972 221 QPLKFAGIGGLSEFLGYTSQLCYPFLH 247 (289)
Q Consensus 221 ~~~~~~~~~G~t~~~Gkt~~l~~l~~~ 247 (289)
.+-.+.++-|.+| .|||++++.|+..
T Consensus 18 ~~g~~i~i~G~~G-sGKSTl~~~L~~~ 43 (230)
T 2vp4_A 18 TQPFTVLIEGNIG-SGKTTYLNHFEKY 43 (230)
T ss_dssp CCCEEEEEECSTT-SCHHHHHHTTGGG
T ss_pred CCceEEEEECCCC-CCHHHHHHHHHhc
Confidence 4456788899984 9999999999443
No 223
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=32.28 E-value=39 Score=28.92 Aligned_cols=24 Identities=21% Similarity=0.047 Sum_probs=19.5
Q ss_pred CCccccccccccccchhhhhcccch
Q 022972 222 PLKFAGIGGLSEFLGYTSQLCYPFL 246 (289)
Q Consensus 222 ~~~~~~~~G~t~~~Gkt~~l~~l~~ 246 (289)
.-.+.++.|.+ |+|||++.+.|++
T Consensus 20 ~~~~i~~~G~~-g~GKst~~~~l~~ 43 (223)
T 3ld9_A 20 GSMFITFEGID-GSGKTTQSHLLAE 43 (223)
T ss_dssp CCEEEEEECST-TSSHHHHHHHHHH
T ss_pred CCeEEEEECCC-CCCHHHHHHHHHH
Confidence 34678888998 4999999999854
No 224
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=31.90 E-value=11 Score=30.96 Aligned_cols=26 Identities=19% Similarity=0.019 Sum_probs=20.0
Q ss_pred CccccccccccccchhhhhcccchhcC
Q 022972 223 LKFAGIGGLSEFLGYTSQLCYPFLHIS 249 (289)
Q Consensus 223 ~~~~~~~G~t~~~Gkt~~l~~l~~~~g 249 (289)
-...++.|.+ |+|||++++.++...+
T Consensus 6 ~~~i~i~G~~-GsGKSTl~~~l~~~~~ 31 (211)
T 3asz_A 6 PFVIGIAGGT-ASGKTTLAQALARTLG 31 (211)
T ss_dssp CEEEEEEEST-TSSHHHHHHHHHHHHG
T ss_pred cEEEEEECCC-CCCHHHHHHHHHHHhC
Confidence 3467888888 5999999999955435
No 225
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=31.87 E-value=12 Score=30.24 Aligned_cols=22 Identities=14% Similarity=0.024 Sum_probs=17.8
Q ss_pred cccccccccccchhhhhcccchh
Q 022972 225 FAGIGGLSEFLGYTSQLCYPFLH 247 (289)
Q Consensus 225 ~~~~~G~t~~~Gkt~~l~~l~~~ 247 (289)
..++.|.+| .|||++.+.|+..
T Consensus 4 ii~l~G~~G-aGKSTl~~~L~~~ 25 (189)
T 2bdt_A 4 LYIITGPAG-VGKSTTCKRLAAQ 25 (189)
T ss_dssp EEEEECSTT-SSHHHHHHHHHHH
T ss_pred EEEEECCCC-CcHHHHHHHHhcc
Confidence 457888984 9999999999543
No 226
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=31.60 E-value=15 Score=33.28 Aligned_cols=28 Identities=18% Similarity=-0.012 Sum_probs=22.4
Q ss_pred CccccccccccccchhhhhcccchhcCCC
Q 022972 223 LKFAGIGGLSEFLGYTSQLCYPFLHISYP 251 (289)
Q Consensus 223 ~~~~~~~G~t~~~Gkt~~l~~l~~~~g~~ 251 (289)
.....+.|.+| +|||.+.+.+|+..|.|
T Consensus 72 ~~~ill~Gp~G-tGKT~la~~la~~l~~~ 99 (376)
T 1um8_A 72 KSNILLIGPTG-SGKTLMAQTLAKHLDIP 99 (376)
T ss_dssp CCCEEEECCTT-SSHHHHHHHHHHHTTCC
T ss_pred CCCEEEECCCC-CCHHHHHHHHHHHhCCC
Confidence 34467889984 99999999997777776
No 227
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=31.51 E-value=9.1 Score=32.20 Aligned_cols=23 Identities=13% Similarity=-0.122 Sum_probs=15.0
Q ss_pred CCccccccccccccchhhhhcccc
Q 022972 222 PLKFAGIGGLSEFLGYTSQLCYPF 245 (289)
Q Consensus 222 ~~~~~~~~G~t~~~Gkt~~l~~l~ 245 (289)
+-...++.|.+| .|||++++.|+
T Consensus 26 ~G~ii~l~Gp~G-sGKSTl~~~L~ 48 (231)
T 3lnc_A 26 VGVILVLSSPSG-CGKTTVANKLL 48 (231)
T ss_dssp CCCEEEEECSCC-----CHHHHHH
T ss_pred CCCEEEEECCCC-CCHHHHHHHHH
Confidence 345678889994 99999999994
No 228
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=31.49 E-value=13 Score=30.67 Aligned_cols=24 Identities=8% Similarity=-0.004 Sum_probs=19.2
Q ss_pred CCccccccccccccchhhhhcccch
Q 022972 222 PLKFAGIGGLSEFLGYTSQLCYPFL 246 (289)
Q Consensus 222 ~~~~~~~~G~t~~~Gkt~~l~~l~~ 246 (289)
+-...++.|.+| .|||++++.|+.
T Consensus 21 ~g~~v~I~G~sG-sGKSTl~~~l~~ 44 (208)
T 3c8u_A 21 GRQLVALSGAPG-SGKSTLSNPLAA 44 (208)
T ss_dssp SCEEEEEECCTT-SCTHHHHHHHHH
T ss_pred CCeEEEEECCCC-CCHHHHHHHHHH
Confidence 446778889884 999999998843
No 229
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=31.35 E-value=14 Score=32.67 Aligned_cols=28 Identities=14% Similarity=-0.275 Sum_probs=22.7
Q ss_pred CccccccccccccchhhhhcccchhcCCC
Q 022972 223 LKFAGIGGLSEFLGYTSQLCYPFLHISYP 251 (289)
Q Consensus 223 ~~~~~~~G~t~~~Gkt~~l~~l~~~~g~~ 251 (289)
.....++|.+| +|||.+.|.+|.+.+.+
T Consensus 49 ~~~vLL~Gp~G-tGKT~la~ala~~~~~~ 76 (301)
T 3cf0_A 49 SKGVLFYGPPG-CGKTLLAKAIANECQAN 76 (301)
T ss_dssp CSEEEEECSSS-SSHHHHHHHHHHHTTCE
T ss_pred CceEEEECCCC-cCHHHHHHHHHHHhCCC
Confidence 35567889984 99999999997777765
No 230
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=31.14 E-value=16 Score=33.07 Aligned_cols=29 Identities=14% Similarity=-0.140 Sum_probs=23.8
Q ss_pred CCccccccccccccchhhhhcccchhcCCC
Q 022972 222 PLKFAGIGGLSEFLGYTSQLCYPFLHISYP 251 (289)
Q Consensus 222 ~~~~~~~~G~t~~~Gkt~~l~~l~~~~g~~ 251 (289)
+.....+.|.+| +|||.+.+.+|+..|.|
T Consensus 50 ~~~~vll~GppG-tGKT~la~~ia~~~~~~ 78 (363)
T 3hws_A 50 GKSNILLIGPTG-SGKTLLAETLARLLDVP 78 (363)
T ss_dssp CCCCEEEECCTT-SSHHHHHHHHHHHTTCC
T ss_pred CCCeEEEECCCC-CCHHHHHHHHHHHcCCC
Confidence 345567889995 99999999997777887
No 231
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=30.58 E-value=14 Score=35.45 Aligned_cols=29 Identities=17% Similarity=0.183 Sum_probs=24.3
Q ss_pred CCccccccccccccchhhhhcccchhcCCC
Q 022972 222 PLKFAGIGGLSEFLGYTSQLCYPFLHISYP 251 (289)
Q Consensus 222 ~~~~~~~~G~t~~~Gkt~~l~~l~~~~g~~ 251 (289)
+.....++|.+| +|||.+.+.+|++.|++
T Consensus 76 ~~~~lLL~GppG-tGKTtla~~la~~l~~~ 104 (516)
T 1sxj_A 76 VFRAAMLYGPPG-IGKTTAAHLVAQELGYD 104 (516)
T ss_dssp SCSEEEEECSTT-SSHHHHHHHHHHHTTCE
T ss_pred CCcEEEEECCCC-CCHHHHHHHHHHHcCCC
Confidence 456778999995 99999999997777875
No 232
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=30.53 E-value=13 Score=32.23 Aligned_cols=27 Identities=19% Similarity=-0.092 Sum_probs=21.1
Q ss_pred ccccccccccccchhhhhcccchhcCCC
Q 022972 224 KFAGIGGLSEFLGYTSQLCYPFLHISYP 251 (289)
Q Consensus 224 ~~~~~~G~t~~~Gkt~~l~~l~~~~g~~ 251 (289)
....+.|.+ |+|||.+.+.+++..+.+
T Consensus 51 ~~vll~G~~-GtGKT~la~~la~~l~~~ 77 (310)
T 1ofh_A 51 KNILMIGPT-GVGKTEIARRLAKLANAP 77 (310)
T ss_dssp CCEEEECCT-TSSHHHHHHHHHHHHTCC
T ss_pred ceEEEECCC-CCCHHHHHHHHHHHhCCC
Confidence 345678888 499999999997666665
No 233
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=30.48 E-value=41 Score=32.97 Aligned_cols=37 Identities=24% Similarity=0.135 Sum_probs=32.5
Q ss_pred CCCcEEEEcCCCCchHHHHHHHHHccCCCeeEccccHH
Q 022972 171 KDTDLIVACQKGLRSLAACELLYNAGYRNLFWVQGGLE 208 (289)
Q Consensus 171 k~~~IVvyC~~G~RS~~aa~~L~~~G~~nV~~L~GG~~ 208 (289)
++.+++|||++-..+..++..|...|+. +..+.||+.
T Consensus 266 ~~~~~IVf~~sr~~~e~la~~L~~~g~~-~~~~h~~l~ 302 (591)
T 2v1x_A 266 KGQSGIIYCFSQKDSEQVTVSLQNLGIH-AGAYHANLE 302 (591)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHHTTCC-EEEECTTSC
T ss_pred cCCCeEEEeCcHHHHHHHHHHHHHCCCC-EEEecCCCC
Confidence 5678999999878899999999999995 999999974
No 234
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=30.43 E-value=15 Score=32.21 Aligned_cols=27 Identities=15% Similarity=-0.009 Sum_probs=21.7
Q ss_pred ccccccccccccchhhhhcccchhcCCC
Q 022972 224 KFAGIGGLSEFLGYTSQLCYPFLHISYP 251 (289)
Q Consensus 224 ~~~~~~G~t~~~Gkt~~l~~l~~~~g~~ 251 (289)
....++|.+| +|||.+.+.++++.|.+
T Consensus 39 ~~vll~G~~G-tGKT~la~~i~~~~~~~ 65 (324)
T 1hqc_A 39 EHLLLFGPPG-LGKTTLAHVIAHELGVN 65 (324)
T ss_dssp CCCEEECCTT-CCCHHHHHHHHHHHTCC
T ss_pred CcEEEECCCC-CCHHHHHHHHHHHhCCC
Confidence 4567889984 99999999997666765
No 235
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=30.36 E-value=14 Score=33.11 Aligned_cols=28 Identities=18% Similarity=0.105 Sum_probs=22.2
Q ss_pred CccccccccccccchhhhhcccchhcCCC
Q 022972 223 LKFAGIGGLSEFLGYTSQLCYPFLHISYP 251 (289)
Q Consensus 223 ~~~~~~~G~t~~~Gkt~~l~~l~~~~g~~ 251 (289)
.....+.|..| +|||.++|.+|...|.+
T Consensus 51 ~~~~ll~Gp~G-~GKTTLa~~ia~~l~~~ 78 (334)
T 1in4_A 51 LDHVLLAGPPG-LGKTTLAHIIASELQTN 78 (334)
T ss_dssp CCCEEEESSTT-SSHHHHHHHHHHHHTCC
T ss_pred CCeEEEECCCC-CcHHHHHHHHHHHhCCC
Confidence 34567889984 99999999997776654
No 236
>3n0a_A Tyrosine-protein phosphatase auxilin; phosphatase-like domain, C2 domain, hydrolase; 2.20A {Bos taurus}
Probab=30.13 E-value=1.1e+02 Score=28.39 Aligned_cols=85 Identities=12% Similarity=0.072 Sum_probs=44.4
Q ss_pred HHHHHhhc---CCCcEEEEeCChhhhhhccCCCcE-eeCCCCCcccccCCCCCccccccccCCccCCCCCCcccHHHHHH
Q 022972 89 REAGYAVQ---LSSKTLLDVRPSTERKKAWIKGSI-WIPIFDIDDTFDAGSLPQKVTNFVMGGWWSGVPTLSYNKQFLSK 164 (289)
Q Consensus 89 ~el~~~l~---~~~~vlIDVRs~~Ey~~ghIPGAi-nIP~~~~~~~~~vgtlyk~~~~~~~~a~~~g~~~~~~~~~f~~~ 164 (289)
+++...++ .+.+.|++++ +..|......+.+ ++|+.+ .+.|......++.+.
T Consensus 50 ~~v~~~L~~~H~~~y~V~NLs-e~~Yd~~~f~~~V~~~~~pD-----------------------~~~P~l~~l~~~~~~ 105 (361)
T 3n0a_A 50 DDIRSFLDSRHLDHYTVYNLS-PKSYRTAKFHSRVSECSWPI-----------------------RQAPSLHNLFAVCRN 105 (361)
T ss_dssp HHHHHHHHHHHTTCEEEEECS-SSCCGGGSCGGGEEECCCCS-----------------------SSCCCHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCeEEEEECC-CCCCChhhcCCcEEEeecCC-----------------------CCCCCHHHHHHHHHH
Confidence 44444443 4578999995 4567654444332 334332 112222223344444
Q ss_pred HHhcC--CCCCcEEEEcCCCC-chH-HHHHHHHHccC
Q 022972 165 VEEKL--PKDTDLIVACQKGL-RSL-AACELLYNAGY 197 (289)
Q Consensus 165 ~~~~l--~k~~~IVvyC~~G~-RS~-~aa~~L~~~G~ 197 (289)
+...+ +++.+++|+|..|. |+. .+|..|...|.
T Consensus 106 i~~~l~~~~~~~v~VHC~aG~GRtg~~ia~~Li~~~~ 142 (361)
T 3n0a_A 106 MYNWLLQNPKNVCVVHCLDGRAASSILVGAMFIFCNL 142 (361)
T ss_dssp HHHHHHHCTTCEEEEEECSCTHHHHHHHHHHHHHTTS
T ss_pred HHHHHhcCCCCeEEEEeCCCCccHHHHHHHHHHHhcC
Confidence 44333 34568999997665 654 44455555554
No 237
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=30.05 E-value=16 Score=31.35 Aligned_cols=27 Identities=19% Similarity=-0.044 Sum_probs=21.5
Q ss_pred CCccccccccccccchhhhhcccchhcC
Q 022972 222 PLKFAGIGGLSEFLGYTSQLCYPFLHIS 249 (289)
Q Consensus 222 ~~~~~~~~G~t~~~Gkt~~l~~l~~~~g 249 (289)
......+.|.. |+|||++.+.|+++.+
T Consensus 31 ~~~~i~l~G~~-GsGKSTla~~L~~~l~ 57 (253)
T 2p5t_B 31 QPIAILLGGQS-GAGKTTIHRIKQKEFQ 57 (253)
T ss_dssp SCEEEEEESCG-GGTTHHHHHHHHHHTT
T ss_pred CCeEEEEECCC-CCCHHHHHHHHHHhcC
Confidence 34567889998 4999999999966655
No 238
>1e2b_A Enzyme IIB-cellobiose; phosphotransferase system, transferas transport, phosphorylation; NMR {Escherichia coli} SCOP: c.44.2.1 PDB: 1iib_A 1h9c_A* 2wwv_D 2wy2_D
Probab=29.88 E-value=30 Score=26.13 Aligned_cols=30 Identities=3% Similarity=-0.022 Sum_probs=20.8
Q ss_pred CcEEEEcCCCCchHHHHH----HHHHccCCCeeEc
Q 022972 173 TDLIVACQKGLRSLAACE----LLYNAGYRNLFWV 203 (289)
Q Consensus 173 ~~IVvyC~~G~RS~~aa~----~L~~~G~~nV~~L 203 (289)
++|++.|.+|+.++.++. .+.+.|++ +.+-
T Consensus 4 kkIll~Cg~G~sTS~l~~k~~~~~~~~gi~-~~i~ 37 (106)
T 1e2b_A 4 KHIYLFSSAGMSTSLLVSKMRAQAEKYEVP-VIIE 37 (106)
T ss_dssp EEEEEECSSSTTTHHHHHHHHHHHHHSCCS-EEEE
T ss_pred cEEEEECCCchhHHHHHHHHHHHHHHCCCC-eEEE
Confidence 479999999997656555 45567885 5443
No 239
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=29.86 E-value=10 Score=33.10 Aligned_cols=27 Identities=11% Similarity=-0.101 Sum_probs=21.1
Q ss_pred ccccccccccccchhhhhcccchh-cCCC
Q 022972 224 KFAGIGGLSEFLGYTSQLCYPFLH-ISYP 251 (289)
Q Consensus 224 ~~~~~~G~t~~~Gkt~~l~~l~~~-~g~~ 251 (289)
....+.|.+| +|||++.+.|+++ .|++
T Consensus 3 ~~I~l~G~~G-sGKST~a~~L~~~~~~~~ 30 (301)
T 1ltq_A 3 KIILTIGCPG-SGKSTWAREFIAKNPGFY 30 (301)
T ss_dssp EEEEEECCTT-SSHHHHHHHHHHHSTTEE
T ss_pred eEEEEECCCC-CCHHHHHHHHHHhCCCcE
Confidence 3567889984 9999999999554 3774
No 240
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=29.40 E-value=14 Score=31.45 Aligned_cols=25 Identities=12% Similarity=-0.067 Sum_probs=19.9
Q ss_pred CCccccccccccccchhhhhcccchh
Q 022972 222 PLKFAGIGGLSEFLGYTSQLCYPFLH 247 (289)
Q Consensus 222 ~~~~~~~~G~t~~~Gkt~~l~~l~~~ 247 (289)
+-.+.++.|.+| +|||++++.|+..
T Consensus 15 ~G~ii~l~GpsG-sGKSTLlk~L~g~ 39 (219)
T 1s96_A 15 QGTLYIVSAPSG-AGKSSLIQALLKT 39 (219)
T ss_dssp CCCEEEEECCTT-SCHHHHHHHHHHH
T ss_pred CCcEEEEECCCC-CCHHHHHHHHhcc
Confidence 446778899995 9999999998443
No 241
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=28.92 E-value=15 Score=29.45 Aligned_cols=27 Identities=15% Similarity=-0.071 Sum_probs=20.2
Q ss_pred ccccccccccccchhhhhcccch----hcCCC
Q 022972 224 KFAGIGGLSEFLGYTSQLCYPFL----HISYP 251 (289)
Q Consensus 224 ~~~~~~G~t~~~Gkt~~l~~l~~----~~g~~ 251 (289)
....+.|.+ |+|||.+++.++. +.|++
T Consensus 39 ~~~~l~G~~-G~GKTtL~~~i~~~~~~~~g~~ 69 (180)
T 3ec2_A 39 KGLTFVGSP-GVGKTHLAVATLKAIYEKKGIR 69 (180)
T ss_dssp CEEEECCSS-SSSHHHHHHHHHHHHHHHSCCC
T ss_pred CEEEEECCC-CCCHHHHHHHHHHHHHHHcCCe
Confidence 456788888 4999999998743 34764
No 242
>2b49_A Protein tyrosine phosphatase, non-receptor type 3; human, STRU genomics, structural genomics consortium, SGC, hydrolase; 1.54A {Homo sapiens}
Probab=28.87 E-value=61 Score=28.64 Aligned_cols=31 Identities=19% Similarity=0.387 Sum_probs=21.2
Q ss_pred HHHHHHHhcCCCCCcEEEEcCCCC-chHHHHH
Q 022972 160 QFLSKVEEKLPKDTDLIVACQKGL-RSLAACE 190 (289)
Q Consensus 160 ~f~~~~~~~l~k~~~IVvyC~~G~-RS~~aa~ 190 (289)
+|+..+......+.||||+|..|. |+...+.
T Consensus 197 ~~i~~v~~~~~~~~PivVHCsaGvGRTGtfia 228 (287)
T 2b49_A 197 EFVNYVRSLRVDSEPVLVHCSAGIGRTGVLVT 228 (287)
T ss_dssp HHHHHHHHHCCTTCCEEEECSSSSHHHHHHHH
T ss_pred HHHHHHHHhccCCCcEEEEcCCCCcHHHHHHH
Confidence 566666654555689999997555 7776553
No 243
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=28.46 E-value=14 Score=29.70 Aligned_cols=21 Identities=14% Similarity=-0.137 Sum_probs=17.3
Q ss_pred ccccccccccchhhhhcccchh
Q 022972 226 AGIGGLSEFLGYTSQLCYPFLH 247 (289)
Q Consensus 226 ~~~~G~t~~~Gkt~~l~~l~~~ 247 (289)
..++|.+ |+|||.+++.++++
T Consensus 41 ~ll~G~~-G~GKT~l~~~l~~~ 61 (226)
T 2chg_A 41 LLFSGPP-GTGKTATAIALARD 61 (226)
T ss_dssp EEEECST-TSSHHHHHHHHHHH
T ss_pred EEEECCC-CCCHHHHHHHHHHH
Confidence 6788888 49999999998553
No 244
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=28.44 E-value=15 Score=30.21 Aligned_cols=24 Identities=29% Similarity=0.095 Sum_probs=19.4
Q ss_pred CCccccccccccccchhhhhcccch
Q 022972 222 PLKFAGIGGLSEFLGYTSQLCYPFL 246 (289)
Q Consensus 222 ~~~~~~~~G~t~~~Gkt~~l~~l~~ 246 (289)
+....++.|.+ |+|||++.+.++.
T Consensus 21 ~~~~i~i~G~~-GsGKstl~~~l~~ 44 (201)
T 1rz3_A 21 GRLVLGIDGLS-RSGKTTLANQLSQ 44 (201)
T ss_dssp SSEEEEEEECT-TSSHHHHHHHHHH
T ss_pred CCeEEEEECCC-CCCHHHHHHHHHH
Confidence 44677889998 4999999999843
No 245
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=28.29 E-value=14 Score=30.42 Aligned_cols=28 Identities=11% Similarity=0.043 Sum_probs=20.7
Q ss_pred Cccccccccccccchhhhhcccch---hcCCC
Q 022972 223 LKFAGIGGLSEFLGYTSQLCYPFL---HISYP 251 (289)
Q Consensus 223 ~~~~~~~G~t~~~Gkt~~l~~l~~---~~g~~ 251 (289)
.+..++.|.+ |+|||+++++|++ ++|+.
T Consensus 4 ~~~i~i~G~s-GsGKTTl~~~L~~~l~~~g~~ 34 (169)
T 1xjc_A 4 MNVWQVVGYK-HSGKTTLMEKWVAAAVREGWR 34 (169)
T ss_dssp CCEEEEECCT-TSSHHHHHHHHHHHHHHTTCC
T ss_pred CEEEEEECCC-CCCHHHHHHHHHHhhHhcCCe
Confidence 3456788888 5999999988754 34774
No 246
>3rss_A Putative uncharacterized protein; unknown function, ADP/ATP-dependent NAD(P)H-hydrate dehydrat lyase; HET: NAP; 1.95A {Thermotoga maritima} PDB: 3rrb_A* 2ax3_A* 3rre_A* 3rrj_A* 3rs8_A* 3rs9_A* 3rsf_A* 3rsg_A* 3rrf_A* 3rsq_A* 3rt7_A* 3rt9_A* 3rta_A* 3rtb_A* 3rtc_A* 3rtd_A* 3rte_A* 3rtg_A* 3ru2_A* 3ru3_A*
Probab=28.18 E-value=34 Score=33.17 Aligned_cols=47 Identities=15% Similarity=0.105 Sum_probs=32.7
Q ss_pred CCCcEEEEcCCCC---chHHHHHHHHHccCCCeeEc-ccc---------HHHHHhCCCCcc
Q 022972 171 KDTDLIVACQKGL---RSLAACELLYNAGYRNLFWV-QGG---------LEAAEEEDLVRE 218 (289)
Q Consensus 171 k~~~IVvyC~~G~---RS~~aa~~L~~~G~~nV~~L-~GG---------~~aw~~~gl~~~ 218 (289)
+.++|+|+|..|+ ....+++.|...||+ |.++ .+. ++.|++.+.++.
T Consensus 51 ~~~~v~VlcG~GNNGGDGlv~AR~L~~~G~~-V~v~~~~~~~~~~~~~~~~~~~~~g~~~~ 110 (502)
T 3rss_A 51 SDYRFLVLCGGGNNGGDGFVVARNLLGVVKD-VLVVFLGKKKTPDCEYNYGLYKKFGGKVV 110 (502)
T ss_dssp TTCEEEEEECSSHHHHHHHHHHHHHTTTSSE-EEEEECCSSCCHHHHHHHHHHHHTTCCEE
T ss_pred CCCEEEEEECCCCCHHHHHHHHHHHHHCCCe-EEEEEECCCCCHHHHHHHHHHHhCCCcee
Confidence 4568999997555 578899999999995 5533 221 456666676654
No 247
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=28.17 E-value=17 Score=30.11 Aligned_cols=24 Identities=17% Similarity=-0.110 Sum_probs=19.6
Q ss_pred CCccccccccccccchhhhhcccch
Q 022972 222 PLKFAGIGGLSEFLGYTSQLCYPFL 246 (289)
Q Consensus 222 ~~~~~~~~G~t~~~Gkt~~l~~l~~ 246 (289)
+-.+.++.|.+| +|||++.+.|++
T Consensus 24 ~~~~i~~~G~~G-sGKsT~~~~l~~ 47 (211)
T 1m7g_A 24 RGLTIWLTGLSA-SGKSTLAVELEH 47 (211)
T ss_dssp SCEEEEEECSTT-SSHHHHHHHHHH
T ss_pred CCCEEEEECCCC-CCHHHHHHHHHH
Confidence 346778889984 999999999855
No 248
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=28.14 E-value=15 Score=30.12 Aligned_cols=23 Identities=13% Similarity=-0.073 Sum_probs=18.2
Q ss_pred ccccccccccccchhhhhcccchh
Q 022972 224 KFAGIGGLSEFLGYTSQLCYPFLH 247 (289)
Q Consensus 224 ~~~~~~G~t~~~Gkt~~l~~l~~~ 247 (289)
....+.|.+ |+|||.+.+.++++
T Consensus 53 ~~~ll~G~~-G~GKT~la~~l~~~ 75 (242)
T 3bos_A 53 QAIYLWGPV-KSGRTHLIHAACAR 75 (242)
T ss_dssp SEEEEECST-TSSHHHHHHHHHHH
T ss_pred CeEEEECCC-CCCHHHHHHHHHHH
Confidence 456788888 49999999988544
No 249
>3ipz_A Monothiol glutaredoxin-S14, chloroplastic; electron transport, PL redox-active center, transit peptide, transport, oxidoreduc; 2.40A {Arabidopsis thaliana} PDB: 2lku_A
Probab=28.07 E-value=50 Score=24.48 Aligned_cols=76 Identities=11% Similarity=-0.049 Sum_probs=41.2
Q ss_pred CCCcEEEEcCC------CCchHHHHHHHHHccCCC-eeEccccHHHHHhCCCCccCCCCCccccccccccccchhhhhcc
Q 022972 171 KDTDLIVACQK------GLRSLAACELLYNAGYRN-LFWVQGGLEAAEEEDLVREGPQPLKFAGIGGLSEFLGYTSQLCY 243 (289)
Q Consensus 171 k~~~IVvyC~~------G~RS~~aa~~L~~~G~~n-V~~L~GG~~aw~~~gl~~~~~~~~~~~~~~G~t~~~Gkt~~l~~ 243 (289)
++.+|+||..+ ..-+..+-.+|...|.+- .+.+...- ..+++-....+....+...+.|. .+|--+.+.+
T Consensus 16 ~~~~Vvvy~k~t~~~p~Cp~C~~ak~~L~~~gi~~~~~dI~~~~-~~~~~l~~~~g~~tvP~ifi~g~--~iGG~d~l~~ 92 (109)
T 3ipz_A 16 NSEKVVLFMKGTRDFPMCGFSNTVVQILKNLNVPFEDVNILENE-MLRQGLKEYSNWPTFPQLYIGGE--FFGGCDITLE 92 (109)
T ss_dssp TSSSEEEEESBCSSSBSSHHHHHHHHHHHHTTCCCEEEEGGGCH-HHHHHHHHHHTCSSSCEEEETTE--EEECHHHHHH
T ss_pred ccCCEEEEEecCCCCCCChhHHHHHHHHHHcCCCcEEEECCCCH-HHHHHHHHHHCCCCCCeEEECCE--EEeCHHHHHH
Confidence 34589999864 446788889999999753 22343331 11111000111122334456665 4666666766
Q ss_pred cchhcCC
Q 022972 244 PFLHISY 250 (289)
Q Consensus 244 l~~~~g~ 250 (289)
+ .+.|-
T Consensus 93 l-~~~G~ 98 (109)
T 3ipz_A 93 A-FKTGE 98 (109)
T ss_dssp H-HHHSH
T ss_pred H-HHcCc
Confidence 6 45554
No 250
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=27.81 E-value=14 Score=29.88 Aligned_cols=24 Identities=17% Similarity=-0.085 Sum_probs=18.8
Q ss_pred cccccccccccchhhhhcccchhcC
Q 022972 225 FAGIGGLSEFLGYTSQLCYPFLHIS 249 (289)
Q Consensus 225 ~~~~~G~t~~~Gkt~~l~~l~~~~g 249 (289)
...++|.. |+|||.+++.++++.+
T Consensus 47 ~~ll~G~~-G~GKT~l~~~~~~~~~ 70 (250)
T 1njg_A 47 AYLFSGTR-GVGKTSIARLLAKGLN 70 (250)
T ss_dssp EEEEECST-TSCHHHHHHHHHHHHH
T ss_pred EEEEECCC-CCCHHHHHHHHHHHhc
Confidence 56788888 4999999999855543
No 251
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=27.79 E-value=13 Score=31.50 Aligned_cols=24 Identities=13% Similarity=-0.004 Sum_probs=19.2
Q ss_pred ccccccccccccchhhhhcccchhc
Q 022972 224 KFAGIGGLSEFLGYTSQLCYPFLHI 248 (289)
Q Consensus 224 ~~~~~~G~t~~~Gkt~~l~~l~~~~ 248 (289)
.+.++.|.. |+|||++.+.|++..
T Consensus 3 ~~i~~~G~~-g~GKtt~~~~l~~~l 26 (241)
T 2ocp_A 3 RRLSIEGNI-AVGKSTFVKLLTKTY 26 (241)
T ss_dssp EEEEEEECT-TSSHHHHHHHHHHHC
T ss_pred eEEEEEcCC-CCCHHHHHHHHHHHc
Confidence 456788888 499999999996554
No 252
>1vkr_A Mannitol-specific PTS system enzyme iiabc compone; phosphotransferase, transferase, kinase, sugar transport; NMR {Escherichia coli} SCOP: c.44.2.1 PDB: 1vrv_A* 2few_B*
Probab=27.51 E-value=37 Score=26.43 Aligned_cols=26 Identities=35% Similarity=0.540 Sum_probs=18.1
Q ss_pred CCcEEEEcCCCCchHHH-HH----HHHHccC
Q 022972 172 DTDLIVACQKGLRSLAA-CE----LLYNAGY 197 (289)
Q Consensus 172 ~~~IVvyC~~G~RS~~a-a~----~L~~~G~ 197 (289)
-++|+++|.+|+-+..+ +. .+.+.|+
T Consensus 13 ~kkIlvVC~sGmgTS~ml~~klkk~~~e~gi 43 (125)
T 1vkr_A 13 VRKIIVACDAGMGSSAMGAGVLRKKIQDAGL 43 (125)
T ss_dssp CCEEEECCSSSSHHHHHHHHHHHHHHHHTTC
T ss_pred ccEEEEECCCcHHHHHHHHHHHHHHHHHCCC
Confidence 35799999999965544 43 4555677
No 253
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=27.27 E-value=17 Score=33.11 Aligned_cols=28 Identities=14% Similarity=-0.274 Sum_probs=22.8
Q ss_pred CccccccccccccchhhhhcccchhcCCC
Q 022972 223 LKFAGIGGLSEFLGYTSQLCYPFLHISYP 251 (289)
Q Consensus 223 ~~~~~~~G~t~~~Gkt~~l~~l~~~~g~~ 251 (289)
..-..+.|.+| +|||.+.+.+|++.|.+
T Consensus 117 ~~~vLl~GppG-tGKT~la~aia~~~~~~ 144 (357)
T 3d8b_A 117 PKGILLFGPPG-TGKTLIGKCIASQSGAT 144 (357)
T ss_dssp CSEEEEESSTT-SSHHHHHHHHHHHTTCE
T ss_pred CceEEEECCCC-CCHHHHHHHHHHHcCCe
Confidence 34567889994 99999999997777876
No 254
>1to0_A Hypothetical UPF0247 protein YYDA; structural genomics, unknown function, PSI, protein structure initiative; 2.50A {Bacillus subtilis} SCOP: c.116.1.3
Probab=27.10 E-value=52 Score=27.17 Aligned_cols=43 Identities=21% Similarity=0.352 Sum_probs=28.9
Q ss_pred HHHhcCCCCCcEEEEcCCCC--chHHHHHHHHH---ccCCCeeEcccc
Q 022972 164 KVEEKLPKDTDLIVACQKGL--RSLAACELLYN---AGYRNLFWVQGG 206 (289)
Q Consensus 164 ~~~~~l~k~~~IVvyC~~G~--RS~~aa~~L~~---~G~~nV~~L~GG 206 (289)
.+.+.++++.-+|+.|-.|. .|...|..|.. .|..++..+-||
T Consensus 62 ~il~~i~~~~~vI~LD~~Gk~~sS~~fA~~l~~~~~~G~~~i~FvIGG 109 (167)
T 1to0_A 62 RILSKISPDAHVIALAIEGKMKTSEELADTIDKLATYGKSKVTFVIGG 109 (167)
T ss_dssp HHHTTSCTTSEEEEEEEEEEECCHHHHHHHHHHHHTTTCCEEEEEECC
T ss_pred HHHhhcCCCCEEEEEcCCCCcCCHHHHHHHHHHHHhcCCceEEEEEEC
Confidence 34445666544777776555 68899988886 465667666666
No 255
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli}
Probab=32.89 E-value=13 Score=29.66 Aligned_cols=38 Identities=24% Similarity=0.267 Sum_probs=31.7
Q ss_pred CCCcEEEEcCCCCchHHHHHHHHHccCCCeeEccccHHH
Q 022972 171 KDTDLIVACQKGLRSLAACELLYNAGYRNLFWVQGGLEA 209 (289)
Q Consensus 171 k~~~IVvyC~~G~RS~~aa~~L~~~G~~nV~~L~GG~~a 209 (289)
++.+++|||++-..+..++..|...|+. +..+.|++..
T Consensus 29 ~~~~~iVF~~~~~~~~~l~~~L~~~~~~-~~~~~g~~~~ 66 (170)
T 2yjt_D 29 EATRSIVFVRKRERVHELANWLREAGIN-NCYLEGEMVQ 66 (170)
Confidence 3457999999888888999999999995 8888888754
No 256
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=26.88 E-value=50 Score=31.68 Aligned_cols=37 Identities=19% Similarity=0.251 Sum_probs=32.2
Q ss_pred CCCcEEEEcCCCCchHHHHHHHHHccCCCeeEccccHH
Q 022972 171 KDTDLIVACQKGLRSLAACELLYNAGYRNLFWVQGGLE 208 (289)
Q Consensus 171 k~~~IVvyC~~G~RS~~aa~~L~~~G~~nV~~L~GG~~ 208 (289)
++.+.+|||++-..+..++..|...|++ +..+.||+.
T Consensus 235 ~~~~~IVf~~sr~~~e~l~~~L~~~g~~-~~~~h~~l~ 271 (523)
T 1oyw_A 235 RGKSGIIYCNSRAKVEDTAARLQSKGIS-AAAYHAGLE 271 (523)
T ss_dssp TTCCEEEECSSHHHHHHHHHHHHHTTCC-EEEECTTSC
T ss_pred CCCcEEEEeCCHHHHHHHHHHHHHCCCC-EEEecCCCC
Confidence 4568999999877889999999999995 999999974
No 257
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=26.78 E-value=51 Score=32.79 Aligned_cols=48 Identities=8% Similarity=0.298 Sum_probs=38.2
Q ss_pred HHHHHHHHhcCCCCCcEEEEcCCCCchHHHHHHHHHccCCCeeEccccH
Q 022972 159 KQFLSKVEEKLPKDTDLIVACQKGLRSLAACELLYNAGYRNLFWVQGGL 207 (289)
Q Consensus 159 ~~f~~~~~~~l~k~~~IVvyC~~G~RS~~aa~~L~~~G~~nV~~L~GG~ 207 (289)
..++..+.....++.+++|+|++-.++..++..|...|++ +..+.|++
T Consensus 432 ~~Ll~~l~~~~~~~~~vlVf~~t~~~ae~L~~~L~~~gi~-~~~lh~~~ 479 (661)
T 2d7d_A 432 DDLIGEIQARIERNERVLVTTLTKKMSEDLTDYLKEIGIK-VNYLHSEI 479 (661)
T ss_dssp HHHHHHHHHHHTTTCEEEEECSSHHHHHHHHHHHHHTTCC-EEEECTTC
T ss_pred HHHHHHHHHHHhcCCeEEEEECCHHHHHHHHHHHHhcCCC-eEEEeCCC
Confidence 4555666555556778999999878899999999999995 88888885
No 258
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=26.74 E-value=15 Score=32.64 Aligned_cols=29 Identities=10% Similarity=-0.146 Sum_probs=23.5
Q ss_pred CCccccccccccccchhhhhcccchhcCCC
Q 022972 222 PLKFAGIGGLSEFLGYTSQLCYPFLHISYP 251 (289)
Q Consensus 222 ~~~~~~~~G~t~~~Gkt~~l~~l~~~~g~~ 251 (289)
+..-..++|.+| +|||.+.+.+|++.+.+
T Consensus 50 ~~~~vLl~GppG-tGKT~la~aia~~~~~~ 78 (322)
T 3eie_A 50 PTSGILLYGPPG-TGKSYLAKAVATEANST 78 (322)
T ss_dssp CCCEEEEECSSS-SCHHHHHHHHHHHHTCE
T ss_pred CCCeEEEECCCC-CcHHHHHHHHHHHHCCC
Confidence 445568889984 99999999997777876
No 259
>2c5s_A THII, probable thiamine biosynthesis protein THII; RNA-binding protein, RNA binding protein, tRNA modification, 4-thiouridine synthase; HET: AMP; 2.5A {Bacillus anthracis} SCOP: c.26.2.6 d.308.1.1
Probab=26.74 E-value=39 Score=31.61 Aligned_cols=27 Identities=22% Similarity=0.260 Sum_probs=23.0
Q ss_pred CCcEEEEcCCCCchHHHHHHHHHccCC
Q 022972 172 DTDLIVACQKGLRSLAACELLYNAGYR 198 (289)
Q Consensus 172 ~~~IVvyC~~G~RS~~aa~~L~~~G~~ 198 (289)
+.++++.+.||..|..++..|.+.|++
T Consensus 187 ~~kvlvalSGGvDS~vll~ll~~~G~~ 213 (413)
T 2c5s_A 187 GGKVMVLLSGGIDSPVAAYLTMKRGVS 213 (413)
T ss_dssp TEEEEEECCSSSHHHHHHHHHHHBTEE
T ss_pred CCeEEEEeCCCChHHHHHHHHHHcCCc
Confidence 457888889999999999999999975
No 260
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=26.67 E-value=10 Score=33.72 Aligned_cols=25 Identities=12% Similarity=-0.047 Sum_probs=17.6
Q ss_pred ccccccccccccchhhhhcccchhcC
Q 022972 224 KFAGIGGLSEFLGYTSQLCYPFLHIS 249 (289)
Q Consensus 224 ~~~~~~G~t~~~Gkt~~l~~l~~~~g 249 (289)
...+++|.+| +|||++.+.|++..|
T Consensus 6 ~iIgItG~sG-SGKSTva~~L~~~lg 30 (290)
T 1a7j_A 6 PIISVTGSSG-AGTSTVKHTFDQIFR 30 (290)
T ss_dssp CEEEEESCC----CCTHHHHHHHHHH
T ss_pred eEEEEECCCC-CCHHHHHHHHHHHHh
Confidence 4678999994 999999999954445
No 261
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=26.59 E-value=17 Score=30.54 Aligned_cols=24 Identities=17% Similarity=-0.013 Sum_probs=19.0
Q ss_pred CCccccccccccccchhhhhcccch
Q 022972 222 PLKFAGIGGLSEFLGYTSQLCYPFL 246 (289)
Q Consensus 222 ~~~~~~~~G~t~~~Gkt~~l~~l~~ 246 (289)
+-...++.|.+| .|||++++.++.
T Consensus 22 ~G~~~~lvGpsG-sGKSTLl~~L~g 45 (218)
T 1z6g_A 22 NIYPLVICGPSG-VGKGTLIKKLLN 45 (218)
T ss_dssp CCCCEEEECSTT-SSHHHHHHHHHH
T ss_pred CCCEEEEECCCC-CCHHHHHHHHHh
Confidence 345678888984 999999999844
No 262
>1tvm_A PTS system, galactitol-specific IIB component; phosphotransferase system (PTS), P-loop; NMR {Escherichia coli}
Probab=26.50 E-value=46 Score=25.22 Aligned_cols=26 Identities=27% Similarity=0.388 Sum_probs=18.2
Q ss_pred CcEEEEcCCCCchHH-HHH----HHHHccCC
Q 022972 173 TDLIVACQKGLRSLA-ACE----LLYNAGYR 198 (289)
Q Consensus 173 ~~IVvyC~~G~RS~~-aa~----~L~~~G~~ 198 (289)
++|++.|.+|+-+.. ++. .+.+.|++
T Consensus 22 kkIlvvC~sG~gTS~ll~~kl~~~~~~~gi~ 52 (113)
T 1tvm_A 22 RKIIVACGGAVATSTMAAEEIKELCQSHNIP 52 (113)
T ss_dssp EEEEEESCSCSSHHHHHHHHHHHHHHHTTCC
T ss_pred cEEEEECCCCHHHHHHHHHHHHHHHHHcCCe
Confidence 479999999996544 454 45556775
No 263
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=26.44 E-value=18 Score=31.67 Aligned_cols=24 Identities=8% Similarity=0.166 Sum_probs=19.6
Q ss_pred CCCccccccccccccchhhhhcccc
Q 022972 221 QPLKFAGIGGLSEFLGYTSQLCYPF 245 (289)
Q Consensus 221 ~~~~~~~~~G~t~~~Gkt~~l~~l~ 245 (289)
.+-...++.|.|| +|||++++.++
T Consensus 23 ~~g~~v~i~Gp~G-sGKSTll~~l~ 46 (261)
T 2eyu_A 23 RKMGLILVTGPTG-SGKSTTIASMI 46 (261)
T ss_dssp CSSEEEEEECSTT-CSHHHHHHHHH
T ss_pred CCCCEEEEECCCC-ccHHHHHHHHH
Confidence 3556788999995 99999999874
No 264
>2yxb_A Coenzyme B12-dependent mutase; alpha/beta, structural genomics, NPPSFA, national project on structural and functional analyses; 1.80A {Aeropyrum pernix}
Probab=26.43 E-value=47 Score=26.81 Aligned_cols=32 Identities=16% Similarity=0.219 Sum_probs=23.2
Q ss_pred CCCcEEEEcCCCC----chHHHHHHHHHccCCCeeEc
Q 022972 171 KDTDLIVACQKGL----RSLAACELLYNAGYRNLFWV 203 (289)
Q Consensus 171 k~~~IVvyC~~G~----RS~~aa~~L~~~G~~nV~~L 203 (289)
+..++++.|-+|. ....++..|+..||+ |..|
T Consensus 17 ~~~~vlla~~~gd~HdiG~~~va~~l~~~G~e-Vi~l 52 (161)
T 2yxb_A 17 RRYKVLVAKMGLDGHDRGAKVVARALRDAGFE-VVYT 52 (161)
T ss_dssp CSCEEEEEEESSSSCCHHHHHHHHHHHHTTCE-EECC
T ss_pred CCCEEEEEeCCCCccHHHHHHHHHHHHHCCCE-EEEC
Confidence 3457888885443 366788899999996 7655
No 265
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=26.16 E-value=38 Score=33.75 Aligned_cols=48 Identities=13% Similarity=0.194 Sum_probs=37.7
Q ss_pred HHHHHHHHhcCCCCCcEEEEcCCCCchHHHHHHHHHccCCCeeEccccH
Q 022972 159 KQFLSKVEEKLPKDTDLIVACQKGLRSLAACELLYNAGYRNLFWVQGGL 207 (289)
Q Consensus 159 ~~f~~~~~~~l~k~~~IVvyC~~G~RS~~aa~~L~~~G~~nV~~L~GG~ 207 (289)
..++..+.....++.+++|+|++-.++..++..|...|++ +..+.|++
T Consensus 426 ~~Ll~~l~~~~~~~~~vlVf~~t~~~ae~L~~~L~~~gi~-~~~lh~~~ 473 (664)
T 1c4o_A 426 LDLMEGIRERAARGERTLVTVLTVRMAEELTSFLVEHGIR-ARYLHHEL 473 (664)
T ss_dssp HHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHHHHHTTCC-EEEECTTC
T ss_pred HHHHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhcCCC-ceeecCCC
Confidence 4555555544456679999999888899999999999995 88888885
No 266
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=26.09 E-value=16 Score=29.70 Aligned_cols=27 Identities=19% Similarity=-0.074 Sum_probs=19.9
Q ss_pred ccccccccccccchhhhhcccchhc---CCC
Q 022972 224 KFAGIGGLSEFLGYTSQLCYPFLHI---SYP 251 (289)
Q Consensus 224 ~~~~~~G~t~~~Gkt~~l~~l~~~~---g~~ 251 (289)
....+.|.+ |+|||.+++.++.+. |++
T Consensus 55 ~~~~l~G~~-GtGKT~la~~i~~~~~~~~~~ 84 (202)
T 2w58_A 55 KGLYLHGSF-GVGKTYLLAAIANELAKRNVS 84 (202)
T ss_dssp CEEEEECST-TSSHHHHHHHHHHHHHTTTCC
T ss_pred CeEEEECCC-CCCHHHHHHHHHHHHHHcCCe
Confidence 455678888 499999999885433 664
No 267
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=26.08 E-value=14 Score=29.40 Aligned_cols=19 Identities=21% Similarity=0.086 Sum_probs=17.1
Q ss_pred cccccccccccchhhhhccc
Q 022972 225 FAGIGGLSEFLGYTSQLCYP 244 (289)
Q Consensus 225 ~~~~~G~t~~~Gkt~~l~~l 244 (289)
+.++.|.+| .|||.+++.+
T Consensus 28 ~~~i~G~NG-sGKStll~ai 46 (182)
T 3kta_A 28 FTAIVGANG-SGKSNIGDAI 46 (182)
T ss_dssp EEEEEECTT-SSHHHHHHHH
T ss_pred cEEEECCCC-CCHHHHHHHH
Confidence 778999995 9999999987
No 268
>3czc_A RMPB; alpha/beta sandwich, phosphotransferase system, transferase, transport; 2.02A {Streptococcus mutans}
Probab=25.82 E-value=40 Score=25.35 Aligned_cols=72 Identities=15% Similarity=0.164 Sum_probs=36.6
Q ss_pred CcEEEEcCCCCchH-HHH----HHHHHccCCCeeEccccHHHHHh----CCCCccCCC-CCc-----cccccccccccch
Q 022972 173 TDLIVACQKGLRSL-AAC----ELLYNAGYRNLFWVQGGLEAAEE----EDLVREGPQ-PLK-----FAGIGGLSEFLGY 237 (289)
Q Consensus 173 ~~IVvyC~~G~RS~-~aa----~~L~~~G~~nV~~L~GG~~aw~~----~gl~~~~~~-~~~-----~~~~~G~t~~~Gk 237 (289)
++|++.|.+|+-+. .+. ..+.+.|++++.+-.-++..... .++=+.+++ ... ..-+.|.+-++++
T Consensus 19 ~kIlvvC~sG~gTS~m~~~kl~~~~~~~gi~~~~i~~~~~~~~~~~~~~~DlIi~t~~l~~~~~~~~~~~vi~i~~~l~~ 98 (110)
T 3czc_A 19 VKVLTACGNGMGSSMVIKMKVENALRQLGVSDIESASCSVGEAKGLASNYDIVVASNHLIHELDGRTNGKLIGLDNLMDD 98 (110)
T ss_dssp EEEEEECCCCHHHHHHHHHHHHHHHHHTTCCCEEEEEECHHHHHHHGGGCSEEEEETTTGGGTTTSCSSEEEEESSTTCH
T ss_pred cEEEEECCCcHHHHHHHHHHHHHHHHHcCCCeEEEEEeeHHHHhhccCCCcEEEECCchHHHhCcCCCceEEEeeccCCH
Confidence 47999999998544 444 35666787523333334444432 232222111 111 1123444445777
Q ss_pred hhhhccc
Q 022972 238 TSQLCYP 244 (289)
Q Consensus 238 t~~l~~l 244 (289)
.++.+++
T Consensus 99 ~ei~~~i 105 (110)
T 3czc_A 99 NEIKTKL 105 (110)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7776665
No 269
>2wul_A Glutaredoxin related protein 5; chromosome 14 open reading frame 87, oxidoreductase, thiored family, GLRX5, FLB4739; HET: GSH; 2.40A {Homo sapiens}
Probab=25.62 E-value=21 Score=27.79 Aligned_cols=73 Identities=15% Similarity=0.027 Sum_probs=40.9
Q ss_pred CcEEEEcCC------CCchHHHHHHHHHccCCC--eeEccccHHHHHhCCCCccCCCCCccccccccccccchhhhhccc
Q 022972 173 TDLIVACQK------GLRSLAACELLYNAGYRN--LFWVQGGLEAAEEEDLVREGPQPLKFAGIGGLSEFLGYTSQLCYP 244 (289)
Q Consensus 173 ~~IVvyC~~------G~RS~~aa~~L~~~G~~n--V~~L~GG~~aw~~~gl~~~~~~~~~~~~~~G~t~~~Gkt~~l~~l 244 (289)
.+||||..+ ..-+..+...|...|..+ .+.+..+- ..++.=....+-...+-.-++|. ++|-.|.+.+|
T Consensus 20 ~~VvvF~Kgt~~~P~C~fc~~ak~lL~~~gv~~~~~~~v~~~~-~~r~~l~~~sg~~TvPqIFI~g~--~IGG~Ddl~~l 96 (118)
T 2wul_A 20 DKVVVFLKGTPEQPQCGFSNAVVQILRLHGVRDYAAYNVLDDP-ELRQGIKDYSNWPTIPQVYLNGE--FVGGCDILLQM 96 (118)
T ss_dssp SSEEEEESBCSSSBSSHHHHHHHHHHHHTTCCSCEEEETTSCH-HHHHHHHHHHTCCSSCEEEETTE--EEECHHHHHHH
T ss_pred CCEEEEEcCCCCCCCCHHHHHHHHHHHHhCCcCeEeecccCCH-HHHHHHHHhccCCCCCeEeECCE--EECCHHHHHHH
Confidence 478998643 235778889999999742 34444442 22221001111122344566666 58888888877
Q ss_pred chhcC
Q 022972 245 FLHIS 249 (289)
Q Consensus 245 ~~~~g 249 (289)
.+.|
T Consensus 97 -~~~G 100 (118)
T 2wul_A 97 -HQNG 100 (118)
T ss_dssp -HHHT
T ss_pred -HHCC
Confidence 4444
No 270
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=25.52 E-value=17 Score=29.82 Aligned_cols=28 Identities=14% Similarity=-0.015 Sum_probs=20.9
Q ss_pred Cccccccccccccchhhhhcccchh---cCCC
Q 022972 223 LKFAGIGGLSEFLGYTSQLCYPFLH---ISYP 251 (289)
Q Consensus 223 ~~~~~~~G~t~~~Gkt~~l~~l~~~---~g~~ 251 (289)
....++.|.+ |+|||++++.|+.. .|+.
T Consensus 6 ~~~i~i~G~s-GsGKTTl~~~l~~~l~~~g~~ 36 (174)
T 1np6_A 6 IPLLAFAAWS-GTGKTTLLKKLIPALCARGIR 36 (174)
T ss_dssp CCEEEEECCT-TSCHHHHHHHHHHHHHHTTCC
T ss_pred ceEEEEEeCC-CCCHHHHHHHHHHhccccCCc
Confidence 4567888998 59999999887443 4663
No 271
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=25.35 E-value=43 Score=29.87 Aligned_cols=35 Identities=11% Similarity=0.078 Sum_probs=30.5
Q ss_pred CCcEEEEcCCCCchHHHHHHHHHccCCCeeEccccH
Q 022972 172 DTDLIVACQKGLRSLAACELLYNAGYRNLFWVQGGL 207 (289)
Q Consensus 172 ~~~IVvyC~~G~RS~~aa~~L~~~G~~nV~~L~GG~ 207 (289)
+.+++|||++-..+..++..|...|+. +..+.|++
T Consensus 28 ~~~~LVF~~t~~~~~~l~~~L~~~g~~-~~~lhg~l 62 (300)
T 3i32_A 28 PDRAMVFTRTKAETEEIAQGLLRLGHP-AQALHGDM 62 (300)
T ss_dssp CSSEEEECSSHHHHHHHHHHHHTTTCC-EEEECSCC
T ss_pred CCCEEEEECCHHHHHHHHHHHHhCCCC-EEEEeCCC
Confidence 568999999877788899999999995 88999984
No 272
>3to5_A CHEY homolog; alpha(5)beta(5), chemotaxis, FLIM, phosphorylation, motor AC signaling protein; 1.65A {Vibrio cholerae}
Probab=25.17 E-value=82 Score=24.38 Aligned_cols=44 Identities=20% Similarity=0.222 Sum_probs=32.9
Q ss_pred CCCCCcEEEEcCCCCchHHHHHHHHHccCCCeeEccccHHHHHh
Q 022972 169 LPKDTDLIVACQKGLRSLAACELLYNAGYRNLFWVQGGLEAAEE 212 (289)
Q Consensus 169 l~k~~~IVvyC~~G~RS~~aa~~L~~~G~~nV~~L~GG~~aw~~ 212 (289)
.+++-+|+|......-...+...|+..||..|..-..|.+++..
T Consensus 9 m~k~~rILiVDD~~~~r~~l~~~L~~~G~~~v~~a~~g~~al~~ 52 (134)
T 3to5_A 9 LNKNMKILIVDDFSTMRRIVKNLLRDLGFNNTQEADDGLTALPM 52 (134)
T ss_dssp CCTTCCEEEECSCHHHHHHHHHHHHHTTCCCEEEESSHHHHHHH
T ss_pred hCCCCEEEEEeCCHHHHHHHHHHHHHcCCcEEEEECCHHHHHHH
Confidence 35555788888765555677889999999877777788887754
No 273
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=24.81 E-value=57 Score=29.28 Aligned_cols=35 Identities=14% Similarity=0.136 Sum_probs=29.9
Q ss_pred CCCCcEEEEcCCCCchHHHHHHHHHccCCCeeEccc
Q 022972 170 PKDTDLIVACQKGLRSLAACELLYNAGYRNLFWVQG 205 (289)
Q Consensus 170 ~k~~~IVvyC~~G~RS~~aa~~L~~~G~~nV~~L~G 205 (289)
.++.+++|||++-.....++..|...|++ +..+.|
T Consensus 359 ~~~~k~lVF~~~~~~~~~l~~~L~~~~~~-~~~~~g 393 (494)
T 1wp9_A 359 KQNSKIIVFTNYRETAKKIVNELVKDGIK-AKRFVG 393 (494)
T ss_dssp CTTCCEEEECSCHHHHHHHHHHHHHTTCC-EEEECC
T ss_pred CCCCeEEEEEccHHHHHHHHHHHHHcCCC-cEEEec
Confidence 45678999999877788899999999996 888888
No 274
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=24.69 E-value=21 Score=30.71 Aligned_cols=25 Identities=16% Similarity=-0.072 Sum_probs=20.6
Q ss_pred ccccccccccccchhhhhcccchhcCC
Q 022972 224 KFAGIGGLSEFLGYTSQLCYPFLHISY 250 (289)
Q Consensus 224 ~~~~~~G~t~~~Gkt~~l~~l~~~~g~ 250 (289)
+...+.|.|| +|||++..+| .+.|+
T Consensus 35 ~~ilI~GpsG-sGKStLA~~L-a~~g~ 59 (205)
T 2qmh_A 35 LGVLITGDSG-VGKSETALEL-VQRGH 59 (205)
T ss_dssp EEEEEECCCT-TTTHHHHHHH-HTTTC
T ss_pred EEEEEECCCC-CCHHHHHHHH-HHhCC
Confidence 4567899995 9999999999 66676
No 275
>3gx8_A Monothiol glutaredoxin-5, mitochondrial; TRX fold, electron transport, mitochondrion, redox-active center, transit peptide, transport; 1.67A {Saccharomyces cerevisiae}
Probab=24.58 E-value=46 Score=25.37 Aligned_cols=74 Identities=14% Similarity=-0.029 Sum_probs=40.8
Q ss_pred CCcEEEEcCC------CCchHHHHHHHHHccCCC----eeEccccHHHHHhCCCCccCCCCCccccccccccccchhhhh
Q 022972 172 DTDLIVACQK------GLRSLAACELLYNAGYRN----LFWVQGGLEAAEEEDLVREGPQPLKFAGIGGLSEFLGYTSQL 241 (289)
Q Consensus 172 ~~~IVvyC~~------G~RS~~aa~~L~~~G~~n----V~~L~GG~~aw~~~gl~~~~~~~~~~~~~~G~t~~~Gkt~~l 241 (289)
..+|+||..+ ..-+..+-.+|...|.+. ...+..+- ..+++-....+....+...++|. .+|--+.+
T Consensus 15 ~~~Vvvfsk~t~~~p~Cp~C~~ak~lL~~~gv~~~~~~~~dv~~~~-~~~~~l~~~sg~~tvP~vfI~g~--~iGG~d~l 91 (121)
T 3gx8_A 15 SAPVVLFMKGTPEFPKCGFSRATIGLLGNQGVDPAKFAAYNVLEDP-ELREGIKEFSEWPTIPQLYVNKE--FIGGCDVI 91 (121)
T ss_dssp SCSEEEEESBCSSSBCTTHHHHHHHHHHHHTBCGGGEEEEECTTCH-HHHHHHHHHHTCCSSCEEEETTE--EEESHHHH
T ss_pred cCCEEEEEeccCCCCCCccHHHHHHHHHHcCCCcceEEEEEecCCH-HHHHHHHHHhCCCCCCeEEECCE--EEecHHHH
Confidence 4579999874 446888999999999751 23444332 22221000111122344456665 46666667
Q ss_pred cccchhcC
Q 022972 242 CYPFLHIS 249 (289)
Q Consensus 242 ~~l~~~~g 249 (289)
.++ .+.|
T Consensus 92 ~~l-~~~G 98 (121)
T 3gx8_A 92 TSM-ARSG 98 (121)
T ss_dssp HHH-HHHT
T ss_pred HHH-HHcC
Confidence 666 4444
No 276
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=24.55 E-value=22 Score=30.28 Aligned_cols=26 Identities=15% Similarity=0.157 Sum_probs=20.8
Q ss_pred CCccccccccccccchhhhhcccchhc
Q 022972 222 PLKFAGIGGLSEFLGYTSQLCYPFLHI 248 (289)
Q Consensus 222 ~~~~~~~~G~t~~~Gkt~~l~~l~~~~ 248 (289)
.-.+.++.|..| +|||++.+.|++..
T Consensus 25 ~g~~i~i~G~~G-sGKsT~~~~l~~~l 50 (229)
T 4eaq_A 25 MSAFITFEGPEG-SGKTTVINEVYHRL 50 (229)
T ss_dssp CCEEEEEECCTT-SCHHHHHHHHHHHH
T ss_pred CCeEEEEEcCCC-CCHHHHHHHHHHHH
Confidence 456788899984 99999999995543
No 277
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=24.50 E-value=16 Score=32.77 Aligned_cols=22 Identities=18% Similarity=0.166 Sum_probs=18.9
Q ss_pred Cccccccccccccchhhhhcccc
Q 022972 223 LKFAGIGGLSEFLGYTSQLCYPF 245 (289)
Q Consensus 223 ~~~~~~~G~t~~~Gkt~~l~~l~ 245 (289)
.+..+++|.+| .|||++++.++
T Consensus 4 i~v~~i~G~~G-aGKTTll~~l~ 25 (318)
T 1nij_A 4 IAVTLLTGFLG-AGKTTLLRHIL 25 (318)
T ss_dssp EEEEEEEESSS-SSCHHHHHHHH
T ss_pred ccEEEEEecCC-CCHHHHHHHHH
Confidence 46778999995 99999999984
No 278
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=24.45 E-value=18 Score=28.61 Aligned_cols=23 Identities=17% Similarity=0.053 Sum_probs=18.1
Q ss_pred ccccccccccccchhhhhcccchh
Q 022972 224 KFAGIGGLSEFLGYTSQLCYPFLH 247 (289)
Q Consensus 224 ~~~~~~G~t~~~Gkt~~l~~l~~~ 247 (289)
...++.|.+| +|||.+++.++..
T Consensus 37 ~~~~l~G~~G-~GKTtL~~~i~~~ 59 (149)
T 2kjq_A 37 QFIYVWGEEG-AGKSHLLQAWVAQ 59 (149)
T ss_dssp SEEEEESSST-TTTCHHHHHHHHH
T ss_pred CEEEEECCCC-CCHHHHHHHHHHH
Confidence 4567888884 9999999998543
No 279
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=24.41 E-value=22 Score=31.69 Aligned_cols=24 Identities=13% Similarity=-0.077 Sum_probs=19.2
Q ss_pred CCccccccccccccchhhhhcccch
Q 022972 222 PLKFAGIGGLSEFLGYTSQLCYPFL 246 (289)
Q Consensus 222 ~~~~~~~~G~t~~~Gkt~~l~~l~~ 246 (289)
+....++.|.+| +|||++.+.|+.
T Consensus 30 ~~~ii~I~G~sG-sGKSTla~~L~~ 53 (290)
T 1odf_A 30 CPLFIFFSGPQG-SGKSFTSIQIYN 53 (290)
T ss_dssp SCEEEEEECCTT-SSHHHHHHHHHH
T ss_pred CCeEEEEECCCC-CCHHHHHHHHHH
Confidence 445778999994 999999998733
No 280
>2der_A TRNA-specific 2-thiouridylase MNMA; protein-RNA complex, transferase/RNA complex; 3.10A {Escherichia coli} PDB: 2det_A 2deu_A*
Probab=24.24 E-value=53 Score=30.48 Aligned_cols=30 Identities=27% Similarity=0.385 Sum_probs=24.8
Q ss_pred CCCcEEEEcCCCCchHHHHHHHHHccCCCee
Q 022972 171 KDTDLIVACQKGLRSLAACELLYNAGYRNLF 201 (289)
Q Consensus 171 k~~~IVvyC~~G~RS~~aa~~L~~~G~~nV~ 201 (289)
++++++|-..||..|..++.+|.+.||+ |.
T Consensus 16 ~~~kVvVa~SGGvDSsv~a~lL~~~G~~-V~ 45 (380)
T 2der_A 16 TAKKVIVGMSGGVDSSVSAWLLQQQGYQ-VE 45 (380)
T ss_dssp -CCEEEEECCSCSTTHHHHHHHHTTCCE-EE
T ss_pred CCCEEEEEEEChHHHHHHHHHHHHcCCe-EE
Confidence 4557888889999999999999999985 53
No 281
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=24.12 E-value=50 Score=34.25 Aligned_cols=39 Identities=18% Similarity=0.122 Sum_probs=34.0
Q ss_pred CCCCcEEEEcCCCCchHHHHHHHHHccCCCeeEccccHHH
Q 022972 170 PKDTDLIVACQKGLRSLAACELLYNAGYRNLFWVQGGLEA 209 (289)
Q Consensus 170 ~k~~~IVvyC~~G~RS~~aa~~L~~~G~~nV~~L~GG~~a 209 (289)
.+++|++|+|++-..|..++..|...|++ ...|.|....
T Consensus 439 ~~gqpvLVft~sie~se~Ls~~L~~~gi~-~~vLnak~~~ 477 (853)
T 2fsf_A 439 AKGQPVLVGTISIEKSELVSNELTKAGIK-HNVLNAKFHA 477 (853)
T ss_dssp TTTCCEEEEESSHHHHHHHHHHHHHTTCC-CEECCTTCHH
T ss_pred cCCCCEEEEECcHHHHHHHHHHHHHCCCC-EEEecCChhH
Confidence 46789999999988899999999999997 7789988653
No 282
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=23.93 E-value=22 Score=30.85 Aligned_cols=27 Identities=15% Similarity=-0.002 Sum_probs=19.7
Q ss_pred CCCccccccccccccchhhhhcccchhc
Q 022972 221 QPLKFAGIGGLSEFLGYTSQLCYPFLHI 248 (289)
Q Consensus 221 ~~~~~~~~~G~t~~~Gkt~~l~~l~~~~ 248 (289)
.+.....++|.+| +|||.+.+.+|+..
T Consensus 65 ~~~~~vll~G~~G-tGKT~la~~la~~l 91 (309)
T 3syl_A 65 TPTLHMSFTGNPG-TGKTTVALKMAGLL 91 (309)
T ss_dssp CCCCEEEEEECTT-SSHHHHHHHHHHHH
T ss_pred CCCceEEEECCCC-CCHHHHHHHHHHHH
Confidence 3445567889984 99999998774443
No 283
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=23.69 E-value=22 Score=30.07 Aligned_cols=38 Identities=13% Similarity=-0.102 Sum_probs=25.9
Q ss_pred HHHHhCCCCccCCCCCccccccccccccchhhhhcccchhcCCC
Q 022972 208 EAAEEEDLVREGPQPLKFAGIGGLSEFLGYTSQLCYPFLHISYP 251 (289)
Q Consensus 208 ~aw~~~gl~~~~~~~~~~~~~~G~t~~~Gkt~~l~~l~~~~g~~ 251 (289)
..+.+-++... .. ..+.|.+| +|||.+++.++...+.+
T Consensus 39 ~~~~~~~~~~~----~g-~ll~G~~G-~GKTtl~~~i~~~~~~~ 76 (254)
T 1ixz_A 39 SRFHEMGARIP----KG-VLLVGPPG-VGKTHLARAVAGEARVP 76 (254)
T ss_dssp HHHHHTTCCCC----SE-EEEECCTT-SSHHHHHHHHHHHTTCC
T ss_pred HHHHHcCCCCC----Ce-EEEECCCC-CCHHHHHHHHHHHhCCC
Confidence 44555555442 12 67889984 99999999997666654
No 284
>1k92_A Argininosuccinate synthase, argininosuccinate SY; N-type ATP pyrophosphatase, ligase; 1.60A {Escherichia coli} SCOP: c.26.2.1 d.210.1.1 PDB: 1k97_A* 1kp2_A* 1kp3_A*
Probab=23.68 E-value=54 Score=31.46 Aligned_cols=33 Identities=24% Similarity=0.288 Sum_probs=27.6
Q ss_pred cCCCCCcEEEEcCCCCchHHHHHHHHHccCCCee
Q 022972 168 KLPKDTDLIVACQKGLRSLAACELLYNAGYRNLF 201 (289)
Q Consensus 168 ~l~k~~~IVvyC~~G~RS~~aa~~L~~~G~~nV~ 201 (289)
.++++++|+|...||..|..++.+|++.|++ |.
T Consensus 6 ~l~~~~KVvVA~SGGlDSSvll~~L~e~G~e-Vi 38 (455)
T 1k92_A 6 HLPVGQRIGIAFSGGLDTSAALLWMRQKGAV-PY 38 (455)
T ss_dssp SCCTTSEEEEECCSSHHHHHHHHHHHHTTCE-EE
T ss_pred hhcCCCeEEEEEcChHHHHHHHHHHHHcCCE-EE
Confidence 4567778999889999999999999999985 54
No 285
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=23.60 E-value=24 Score=35.33 Aligned_cols=27 Identities=22% Similarity=0.055 Sum_probs=22.3
Q ss_pred ccccccccccccchhhhhcccchhc---CCC
Q 022972 224 KFAGIGGLSEFLGYTSQLCYPFLHI---SYP 251 (289)
Q Consensus 224 ~~~~~~G~t~~~Gkt~~l~~l~~~~---g~~ 251 (289)
.+..++|.+| +|||++.+.|++.. |++
T Consensus 53 ~lIvLtGlsG-SGKSTlAr~La~~L~~~G~~ 82 (630)
T 1x6v_B 53 CTVWLTGLSG-AGKTTVSMALEEYLVCHGIP 82 (630)
T ss_dssp EEEEEECSTT-SSHHHHHHHHHHHHHHTTCC
T ss_pred CEEEEEeCCC-CCHHHHHHHHHHHHHhcCCe
Confidence 5678999994 99999999996654 876
No 286
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=23.40 E-value=80 Score=28.62 Aligned_cols=83 Identities=14% Similarity=-0.038 Sum_probs=51.7
Q ss_pred HHhcCCCCCcEEEEcCCCCchHHHHHHHHHccCCCeeEcccc-------HHHHHhCCCCc-c--CC----CCCccccccc
Q 022972 165 VEEKLPKDTDLIVACQKGLRSLAACELLYNAGYRNLFWVQGG-------LEAAEEEDLVR-E--GP----QPLKFAGIGG 230 (289)
Q Consensus 165 ~~~~l~k~~~IVvyC~~G~RS~~aa~~L~~~G~~nV~~L~GG-------~~aw~~~gl~~-~--~~----~~~~~~~~~G 230 (289)
+.+.+..+.|.||+|++-.-........++.|.+ +....-- +..|....+.- . +. ..-.-..+.|
T Consensus 73 ler~l~~~~P~IIltrg~~~peelie~A~~~~IP-VL~T~~~ts~~~~~l~~~l~~~~~~~~~~H~~~v~~~g~~vl~~G 151 (314)
T 1ko7_A 73 MRKLCRPETPAIIVTRDLEPPEELIEAAKEHETP-LITSKIATTQLMSRLTTFLEHELARTTSLHGVLVDVYGVGVLITG 151 (314)
T ss_dssp HHHHCCTTCCCEEECTTCCCCHHHHHHHHHTTCC-EEECCSCHHHHHHHHHHHHHHHTCEEEEEESEEEEETTEEEEEEE
T ss_pred HHHHhcCCCCEEEEeCCCCCCHHHHHHHHHCCCe-EEEECCchhHHHHHHHHHHHHhhccceeeeEEEEEECCEEEEEEe
Confidence 3334556789999998766677777888888885 5544332 33444432211 0 00 0123456788
Q ss_pred cccccchhhhhcccchhcCC
Q 022972 231 LSEFLGYTSQLCYPFLHISY 250 (289)
Q Consensus 231 ~t~~~Gkt~~l~~l~~~~g~ 250 (289)
.+| +||++...+| .+.|+
T Consensus 152 ~sG-~GKSt~a~~l-~~~g~ 169 (314)
T 1ko7_A 152 DSG-IGKSETALEL-IKRGH 169 (314)
T ss_dssp STT-SSHHHHHHHH-HHTTC
T ss_pred CCC-CCHHHHHHHH-HhcCC
Confidence 884 9999998888 66676
No 287
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=23.33 E-value=33 Score=29.92 Aligned_cols=25 Identities=12% Similarity=-0.137 Sum_probs=20.6
Q ss_pred ccccccccccchhhhhcccchhcCCC
Q 022972 226 AGIGGLSEFLGYTSQLCYPFLHISYP 251 (289)
Q Consensus 226 ~~~~G~t~~~Gkt~~l~~l~~~~g~~ 251 (289)
..+.|..| .|||.++|.+|...+.+
T Consensus 47 vlL~Gp~G-tGKTtLakala~~~~~~ 71 (274)
T 2x8a_A 47 VLLAGPPG-CGKTLLAKAVANESGLN 71 (274)
T ss_dssp EEEESSTT-SCHHHHHHHHHHHTTCE
T ss_pred EEEECCCC-CcHHHHHHHHHHHcCCC
Confidence 77889984 99999999997766653
No 288
>1wy5_A TILS, hypothetical UPF0072 protein AQ_1887; N-type ATP-ppase, structural genomics, translation, NPPSFA; 2.42A {Aquifex aeolicus} SCOP: c.26.2.5 d.229.1.1 PDB: 2e21_A* 2e89_A*
Probab=23.26 E-value=1.1e+02 Score=27.28 Aligned_cols=39 Identities=13% Similarity=0.284 Sum_probs=29.5
Q ss_pred CCCCCcEEEEcCCCCchHHHHHHHHHc----cCCCe--eEccccH
Q 022972 169 LPKDTDLIVACQKGLRSLAACELLYNA----GYRNL--FWVQGGL 207 (289)
Q Consensus 169 l~k~~~IVvyC~~G~RS~~aa~~L~~~----G~~nV--~~L~GG~ 207 (289)
++++++++|.+.||..|..++..|.+. |++++ ..++-|+
T Consensus 21 ~~~~~~vlva~SGG~DS~~Ll~ll~~~~~~~g~~~v~av~vd~g~ 65 (317)
T 1wy5_A 21 FSGERRVLIAFSGGVDSVVLTDVLLKLKNYFSLKEVALAHFNHML 65 (317)
T ss_dssp CSSCCEEEEECCSSHHHHHHHHHHHHSTTTTTCSEEEEEEEECCS
T ss_pred CCCCCEEEEEecchHHHHHHHHHHHHHHHHcCCCEEEEEEEECCC
Confidence 567778999999999999999998875 77523 3555554
No 289
>2cwd_A Low molecular weight phosphotyrosine protein PHOS; tyrosine phosphatase, structural genomics; 1.90A {Thermus thermophilus}
Probab=23.15 E-value=39 Score=27.31 Aligned_cols=38 Identities=18% Similarity=0.155 Sum_probs=27.4
Q ss_pred CcEEEEcC-CCCchHHHHHHHHHc----cC-CCeeEccccHHHH
Q 022972 173 TDLIVACQ-KGLRSLAACELLYNA----GY-RNLFWVQGGLEAA 210 (289)
Q Consensus 173 ~~IVvyC~-~G~RS~~aa~~L~~~----G~-~nV~~L~GG~~aw 210 (289)
.+|+++|. +-.||..+-.+|+.+ |. +++.+...|...|
T Consensus 5 ~~VLFVC~gN~cRSpmAEal~~~~~~~~gl~~~~~v~SAGt~~~ 48 (161)
T 2cwd_A 5 VRVLFVCLGNICRSPMAEGIFRKLLKERGLEDRFEVDSAGTGAW 48 (161)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHHHHHHHTCTTTEEEEEEESSCT
T ss_pred CEEEEECCCcHHHHHHHHHHHHHHHHHcCCCCcEEEEecccCCC
Confidence 47999996 445999888887765 54 3566777777776
No 290
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=23.01 E-value=23 Score=31.23 Aligned_cols=27 Identities=22% Similarity=-0.101 Sum_probs=20.7
Q ss_pred ccccccccccccchhhhhcccchhc---CCC
Q 022972 224 KFAGIGGLSEFLGYTSQLCYPFLHI---SYP 251 (289)
Q Consensus 224 ~~~~~~G~t~~~Gkt~~l~~l~~~~---g~~ 251 (289)
....+.|.+ |+|||.+++.++.+. |++
T Consensus 38 ~~lll~G~~-GtGKT~la~~i~~~~~~~~~~ 67 (324)
T 1l8q_A 38 NPIFIYGSV-GTGKTHLLQAAGNEAKKRGYR 67 (324)
T ss_dssp SSEEEECSS-SSSHHHHHHHHHHHHHHTTCC
T ss_pred CeEEEECCC-CCcHHHHHHHHHHHHHHCCCE
Confidence 456678888 499999999986554 665
No 291
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=22.97 E-value=81 Score=27.69 Aligned_cols=37 Identities=14% Similarity=0.081 Sum_probs=31.6
Q ss_pred CCCcEEEEcCCCCchHHHHHHHHHccCCCeeEccccHH
Q 022972 171 KDTDLIVACQKGLRSLAACELLYNAGYRNLFWVQGGLE 208 (289)
Q Consensus 171 k~~~IVvyC~~G~RS~~aa~~L~~~G~~nV~~L~GG~~ 208 (289)
++.+++|||++-..+..++..|+..|++ +..+.|++.
T Consensus 242 ~~~~~lvf~~~~~~~~~l~~~l~~~~~~-~~~~~~~~~ 278 (395)
T 3pey_A 242 TIGSSIIFVATKKTANVLYGKLKSEGHE-VSILHGDLQ 278 (395)
T ss_dssp TSSEEEEECSCHHHHHHHHHHHHHTTCC-CEEECTTSC
T ss_pred cCCCEEEEeCCHHHHHHHHHHHHhcCCc-EEEeCCCCC
Confidence 4568999999877788999999999995 889999864
No 292
>4h3k_B RNA polymerase II subunit A C-terminal domain PHO SSU72; heat repeat, phosphatase, RNA polymerase II, hydrolase; HET: SEP; 2.00A {Homo sapiens} PDB: 3o2q_B* 4h3h_B* 3o2s_B
Probab=22.64 E-value=69 Score=27.58 Aligned_cols=29 Identities=21% Similarity=0.297 Sum_probs=24.0
Q ss_pred cEEEEcCCC-CchHHHHHHHHHccCCCeeEc
Q 022972 174 DLIVACQKG-LRSLAACELLYNAGYRNLFWV 203 (289)
Q Consensus 174 ~IVvyC~~G-~RS~~aa~~L~~~G~~nV~~L 203 (289)
.+.++|.+. +||..+-..|.+.||+ |.-+
T Consensus 27 r~avVCaSN~NRSMEAH~~L~k~Gf~-V~Sf 56 (214)
T 4h3k_B 27 RVAVVSSSNQNRSMEAHNILSKRGFS-VRSF 56 (214)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHTTCE-EEEE
T ss_pred eEEEECCCCcchhHHHHHHHHHCCCc-eEee
Confidence 588999755 5999999999999994 7654
No 293
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=22.63 E-value=48 Score=29.34 Aligned_cols=37 Identities=14% Similarity=0.291 Sum_probs=31.5
Q ss_pred CCCcEEEEcCCCCchHHHHHHHHHccCCCeeEccccHH
Q 022972 171 KDTDLIVACQKGLRSLAACELLYNAGYRNLFWVQGGLE 208 (289)
Q Consensus 171 k~~~IVvyC~~G~RS~~aa~~L~~~G~~nV~~L~GG~~ 208 (289)
+..+++|||++-..+..++..|...|++ +..+.|++.
T Consensus 249 ~~~~~lvf~~~~~~~~~l~~~L~~~~~~-~~~~~~~~~ 285 (391)
T 1xti_A 249 EFNQVVIFVKSVQRCIALAQLLVEQNFP-AIAIHRGMP 285 (391)
T ss_dssp CCSEEEEECSCHHHHHHHHHHHHHTTCC-EEEECTTSC
T ss_pred CCCcEEEEeCcHHHHHHHHHHHHhCCCc-EEEEeCCCC
Confidence 4568999999877888999999999996 888999854
No 294
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=22.57 E-value=23 Score=28.33 Aligned_cols=22 Identities=18% Similarity=0.036 Sum_probs=17.7
Q ss_pred CCccccccccccccchhhhhccc
Q 022972 222 PLKFAGIGGLSEFLGYTSQLCYP 244 (289)
Q Consensus 222 ~~~~~~~~G~t~~~Gkt~~l~~l 244 (289)
+-.+.++.|.+| .|||++++.+
T Consensus 8 ~gei~~l~G~nG-sGKSTl~~~~ 29 (171)
T 4gp7_A 8 ELSLVVLIGSSG-SGKSTFAKKH 29 (171)
T ss_dssp SSEEEEEECCTT-SCHHHHHHHH
T ss_pred CCEEEEEECCCC-CCHHHHHHHH
Confidence 446778899994 9999999954
No 295
>3mmj_A MYO-inositol hexaphosphate phosphohydrolase; phytase, protein tyrosine phosphatase, inositol phosphate, I phosphatase; HET: IHP; 1.60A {Selenomonas ruminantium} SCOP: c.45.1.4 PDB: 1u24_A 1u25_A* 1u26_A* 3o3l_A* 3moz_A* 2pt0_A 2psz_A 3d1h_A 3d1o_A 3d1q_A 2b4u_A 2b4p_A 2b4o_A
Probab=22.34 E-value=95 Score=28.26 Aligned_cols=29 Identities=31% Similarity=0.437 Sum_probs=19.3
Q ss_pred HHHHHHHhcCCCCCcEEEEcCCCC-chHHHH
Q 022972 160 QFLSKVEEKLPKDTDLIVACQKGL-RSLAAC 189 (289)
Q Consensus 160 ~f~~~~~~~l~k~~~IVvyC~~G~-RS~~aa 189 (289)
.|++.+. .++++.+++|.|..|. |+..+.
T Consensus 202 ~fl~~v~-~l~~~~~i~vHC~aG~GRTgt~m 231 (314)
T 3mmj_A 202 RFLAFYR-TLPQDAWLHFHSEAGVGRTTAFM 231 (314)
T ss_dssp HHHHHHH-TCCTTCEEEEECSSSSHHHHHHH
T ss_pred HHHHHHH-HcCCCCCEEEECCCCCchHHHHH
Confidence 4444333 4777889999998776 755443
No 296
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=22.20 E-value=22 Score=31.01 Aligned_cols=25 Identities=16% Similarity=0.050 Sum_probs=19.5
Q ss_pred ccccccccccccchhhhhcccchhcC
Q 022972 224 KFAGIGGLSEFLGYTSQLCYPFLHIS 249 (289)
Q Consensus 224 ~~~~~~G~t~~~Gkt~~l~~l~~~~g 249 (289)
....++|.. |+|||.++++++++.|
T Consensus 32 ~~v~i~G~~-G~GKT~Ll~~~~~~~~ 56 (350)
T 2qen_A 32 PLTLLLGIR-RVGKSSLLRAFLNERP 56 (350)
T ss_dssp SEEEEECCT-TSSHHHHHHHHHHHSS
T ss_pred CeEEEECCC-cCCHHHHHHHHHHHcC
Confidence 466788888 4999999999855544
No 297
>3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A*
Probab=21.99 E-value=38 Score=34.97 Aligned_cols=38 Identities=13% Similarity=0.073 Sum_probs=32.9
Q ss_pred CCCCcEEEEcCCCCchHHHHHHHHHccCCCeeEccccHH
Q 022972 170 PKDTDLIVACQKGLRSLAACELLYNAGYRNLFWVQGGLE 208 (289)
Q Consensus 170 ~k~~~IVvyC~~G~RS~~aa~~L~~~G~~nV~~L~GG~~ 208 (289)
.+++|++|+|++-..|..++..|...|++ ...|.|+..
T Consensus 472 ~~gqpVLVFt~S~e~sE~Ls~~L~~~Gi~-~~vLhgkq~ 509 (822)
T 3jux_A 472 KKGQPVLVGTTSIEKSELLSSMLKKKGIP-HQVLNAKYH 509 (822)
T ss_dssp HHTCCEEEEESSHHHHHHHHHHHHTTTCC-CEEECSCHH
T ss_pred hCCCCEEEEECCHHHHHHHHHHHHHCCCC-EEEeeCCch
Confidence 35679999999888899999999999996 778899854
No 298
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=21.96 E-value=24 Score=32.30 Aligned_cols=28 Identities=11% Similarity=-0.245 Sum_probs=22.9
Q ss_pred CccccccccccccchhhhhcccchhcCCC
Q 022972 223 LKFAGIGGLSEFLGYTSQLCYPFLHISYP 251 (289)
Q Consensus 223 ~~~~~~~G~t~~~Gkt~~l~~l~~~~g~~ 251 (289)
..-..++|.+| +|||.+.+.+|++.|.+
T Consensus 148 ~~~vLL~GppG-tGKT~la~aia~~~~~~ 175 (389)
T 3vfd_A 148 ARGLLLFGPPG-NGKTMLAKAVAAESNAT 175 (389)
T ss_dssp CSEEEEESSTT-SCHHHHHHHHHHHTTCE
T ss_pred CceEEEECCCC-CCHHHHHHHHHHhhcCc
Confidence 45567889984 99999999997777775
No 299
>3rof_A Low molecular weight protein-tyrosine-phosphatase; phosphatase, hydrolase; 1.03A {Staphylococcus aureus}
Probab=21.95 E-value=42 Score=27.23 Aligned_cols=38 Identities=16% Similarity=0.146 Sum_probs=27.3
Q ss_pred CcEEEEcC-CCCchHHHHHHHHHc----cCCCeeEccccHHHH
Q 022972 173 TDLIVACQ-KGLRSLAACELLYNA----GYRNLFWVQGGLEAA 210 (289)
Q Consensus 173 ~~IVvyC~-~G~RS~~aa~~L~~~----G~~nV~~L~GG~~aw 210 (289)
.+|+++|. +-.||..|..+++.+ |..++.+-..|...|
T Consensus 7 ~~vLFVC~gN~cRSpmAE~i~~~~~~~~gl~~~~v~SAGt~~~ 49 (158)
T 3rof_A 7 VDVAFVCLGNICRSPMAEAIMRQRLKDRNIHDIKVHSRGTGSW 49 (158)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHHHHHHTTCCSEEEEEEETTCC
T ss_pred CEEEEEeCCchhHHHHHHHHHHHHHHHcCCCCeEEEecccCCc
Confidence 36999996 445999888877664 555566777777666
No 300
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=21.70 E-value=17 Score=31.78 Aligned_cols=26 Identities=15% Similarity=0.096 Sum_probs=20.0
Q ss_pred ccccccccccccchhhhhcccchhcCC
Q 022972 224 KFAGIGGLSEFLGYTSQLCYPFLHISY 250 (289)
Q Consensus 224 ~~~~~~G~t~~~Gkt~~l~~l~~~~g~ 250 (289)
....++|.. |+|||.++++++++.+.
T Consensus 31 ~~v~i~G~~-G~GKT~L~~~~~~~~~~ 56 (357)
T 2fna_A 31 PITLVLGLR-RTGKSSIIKIGINELNL 56 (357)
T ss_dssp SEEEEEEST-TSSHHHHHHHHHHHHTC
T ss_pred CcEEEECCC-CCCHHHHHHHHHHhcCC
Confidence 367788888 49999999998555444
No 301
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=21.69 E-value=39 Score=29.06 Aligned_cols=38 Identities=13% Similarity=-0.102 Sum_probs=26.0
Q ss_pred HHHHhCCCCccCCCCCccccccccccccchhhhhcccchhcCCC
Q 022972 208 EAAEEEDLVREGPQPLKFAGIGGLSEFLGYTSQLCYPFLHISYP 251 (289)
Q Consensus 208 ~aw~~~gl~~~~~~~~~~~~~~G~t~~~Gkt~~l~~l~~~~g~~ 251 (289)
..+.+-++... .. ..+.|.+| +|||.+++.++...+.+
T Consensus 63 ~~l~~~~~~~~----~g-vll~Gp~G-tGKTtl~~~i~~~~~~~ 100 (278)
T 1iy2_A 63 SRFHEMGARIP----KG-VLLVGPPG-VGKTHLARAVAGEARVP 100 (278)
T ss_dssp HHHHHTTCCCC----CE-EEEECCTT-SSHHHHHHHHHHHTTCC
T ss_pred HHHHHcCCCCC----Ce-EEEECCCc-ChHHHHHHHHHHHcCCC
Confidence 44555555442 12 67889984 99999999996665544
No 302
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=21.65 E-value=28 Score=33.29 Aligned_cols=27 Identities=19% Similarity=-0.038 Sum_probs=22.6
Q ss_pred ccccccccccccchhhhhcccchhcCCC
Q 022972 224 KFAGIGGLSEFLGYTSQLCYPFLHISYP 251 (289)
Q Consensus 224 ~~~~~~G~t~~~Gkt~~l~~l~~~~g~~ 251 (289)
.-..+.|.+| +|||.+.|.+|+..|+|
T Consensus 51 ~~iLl~GppG-tGKT~lar~lA~~l~~~ 77 (444)
T 1g41_A 51 KNILMIGPTG-VGKTEIARRLAKLANAP 77 (444)
T ss_dssp CCEEEECCTT-SSHHHHHHHHHHHTTCC
T ss_pred ceEEEEcCCC-CCHHHHHHHHHHHcCCC
Confidence 4467889984 99999999998877887
No 303
>3zyw_A Glutaredoxin-3; metal binding protein; 1.84A {Homo sapiens}
Probab=21.64 E-value=59 Score=24.32 Aligned_cols=76 Identities=9% Similarity=-0.065 Sum_probs=40.8
Q ss_pred CCCcEEEEcC-----CCC-chHHHHHHHHHccCCC-eeEccccHHHHHhCCCCccCCCCCccccccccccccchhhhhcc
Q 022972 171 KDTDLIVACQ-----KGL-RSLAACELLYNAGYRN-LFWVQGGLEAAEEEDLVREGPQPLKFAGIGGLSEFLGYTSQLCY 243 (289)
Q Consensus 171 k~~~IVvyC~-----~G~-RS~~aa~~L~~~G~~n-V~~L~GG~~aw~~~gl~~~~~~~~~~~~~~G~t~~~Gkt~~l~~ 243 (289)
++.+|++|.. .+- -+..+-.+|...|.+- .+.+... ..++++-....+....+...++|. .+|--+.+.+
T Consensus 14 ~~~~Vvlf~kg~~~~~~Cp~C~~ak~~L~~~gi~y~~~di~~d-~~~~~~l~~~~g~~tvP~ifi~g~--~iGG~d~l~~ 90 (111)
T 3zyw_A 14 HAAPCMLFMKGTPQEPRCGFSKQMVEILHKHNIQFSSFDIFSD-EEVRQGLKAYSSWPTYPQLYVSGE--LIGGLDIIKE 90 (111)
T ss_dssp TSSSEEEEESBCSSSBSSHHHHHHHHHHHHTTCCCEEEEGGGC-HHHHHHHHHHHTCCSSCEEEETTE--EEECHHHHHH
T ss_pred hcCCEEEEEecCCCCCcchhHHHHHHHHHHcCCCeEEEECcCC-HHHHHHHHHHHCCCCCCEEEECCE--EEecHHHHHH
Confidence 3458999986 333 4677888999999752 2344433 333321001111122344456665 4666666666
Q ss_pred cchhcCC
Q 022972 244 PFLHISY 250 (289)
Q Consensus 244 l~~~~g~ 250 (289)
+ .+.|-
T Consensus 91 l-~~~G~ 96 (111)
T 3zyw_A 91 L-EASEE 96 (111)
T ss_dssp H-HHTTC
T ss_pred H-HHCCC
Confidence 6 45553
No 304
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=21.53 E-value=27 Score=31.40 Aligned_cols=25 Identities=12% Similarity=0.069 Sum_probs=19.9
Q ss_pred CCCccccccccccccchhhhhcccch
Q 022972 221 QPLKFAGIGGLSEFLGYTSQLCYPFL 246 (289)
Q Consensus 221 ~~~~~~~~~G~t~~~Gkt~~l~~l~~ 246 (289)
.+-...++.|.+| +|||++++.++.
T Consensus 88 ~~g~ivgI~G~sG-sGKSTL~~~L~g 112 (312)
T 3aez_A 88 PVPFIIGVAGSVA-VGKSTTARVLQA 112 (312)
T ss_dssp CCCEEEEEECCTT-SCHHHHHHHHHH
T ss_pred CCCEEEEEECCCC-chHHHHHHHHHh
Confidence 3456778899994 999999998843
No 305
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=21.28 E-value=24 Score=30.65 Aligned_cols=24 Identities=17% Similarity=0.047 Sum_probs=19.6
Q ss_pred cccccccccchhhhhcccchhcCCC
Q 022972 227 GIGGLSEFLGYTSQLCYPFLHISYP 251 (289)
Q Consensus 227 ~~~G~t~~~Gkt~~l~~l~~~~g~~ 251 (289)
++.|.. |+|||++.+.|+++.|++
T Consensus 12 ~~~G~p-GsGKsT~a~~L~~~~g~~ 35 (230)
T 3gmt_A 12 ILLGAP-GAGKGTQANFIKEKFGIP 35 (230)
T ss_dssp EEECCT-TSCHHHHHHHHHHHHTCC
T ss_pred eeECCC-CCCHHHHHHHHHHHhCCC
Confidence 555665 599999999997777997
No 306
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=21.11 E-value=23 Score=32.19 Aligned_cols=29 Identities=10% Similarity=-0.146 Sum_probs=23.1
Q ss_pred CCccccccccccccchhhhhcccchhcCCC
Q 022972 222 PLKFAGIGGLSEFLGYTSQLCYPFLHISYP 251 (289)
Q Consensus 222 ~~~~~~~~G~t~~~Gkt~~l~~l~~~~g~~ 251 (289)
+..-..++|.+| +|||.+.+.+|++.+.+
T Consensus 83 ~~~~iLL~GppG-tGKT~la~ala~~~~~~ 111 (355)
T 2qp9_X 83 PTSGILLYGPPG-TGKSYLAKAVATEANST 111 (355)
T ss_dssp CCCCEEEECSTT-SCHHHHHHHHHHHHTCE
T ss_pred CCceEEEECCCC-CcHHHHHHHHHHHhCCC
Confidence 334567789984 99999999997777876
No 307
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=21.10 E-value=23 Score=28.96 Aligned_cols=21 Identities=19% Similarity=-0.037 Sum_probs=16.5
Q ss_pred ccccccccccchhhhhcccchh
Q 022972 226 AGIGGLSEFLGYTSQLCYPFLH 247 (289)
Q Consensus 226 ~~~~G~t~~~Gkt~~l~~l~~~ 247 (289)
.++.|.. |.|||++++.++..
T Consensus 3 i~l~G~n-GsGKTTLl~~l~g~ 23 (178)
T 1ye8_A 3 IIITGEP-GVGKTTLVKKIVER 23 (178)
T ss_dssp EEEECCT-TSSHHHHHHHHHHH
T ss_pred EEEECCC-CCCHHHHHHHHHHH
Confidence 4678888 49999999987543
No 308
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=20.87 E-value=24 Score=31.19 Aligned_cols=24 Identities=21% Similarity=0.134 Sum_probs=19.0
Q ss_pred ccccccccccccchhhhhcccchhc
Q 022972 224 KFAGIGGLSEFLGYTSQLCYPFLHI 248 (289)
Q Consensus 224 ~~~~~~G~t~~~Gkt~~l~~l~~~~ 248 (289)
....+.|.. |+|||.+++.++++.
T Consensus 46 ~~vli~G~~-G~GKTtl~~~l~~~~ 69 (386)
T 2qby_A 46 NNIFIYGLT-GTGKTAVVKFVLSKL 69 (386)
T ss_dssp CCEEEEECT-TSSHHHHHHHHHHHH
T ss_pred CeEEEECCC-CCCHHHHHHHHHHHH
Confidence 466788888 499999999985544
No 309
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=20.78 E-value=31 Score=30.54 Aligned_cols=24 Identities=21% Similarity=0.058 Sum_probs=19.1
Q ss_pred ccccccccccccchhhhhcccchhc
Q 022972 224 KFAGIGGLSEFLGYTSQLCYPFLHI 248 (289)
Q Consensus 224 ~~~~~~G~t~~~Gkt~~l~~l~~~~ 248 (289)
....+.|.+ |+|||.+++.++++.
T Consensus 45 ~~vll~G~~-G~GKT~l~~~~~~~~ 68 (387)
T 2v1u_A 45 SNALLYGLT-GTGKTAVARLVLRRL 68 (387)
T ss_dssp CCEEECBCT-TSSHHHHHHHHHHHH
T ss_pred CcEEEECCC-CCCHHHHHHHHHHHH
Confidence 456788998 499999999986544
No 310
>1u2p_A Ptpase, low molecular weight protein-tyrosine- phosphatase; hydrolase; 1.90A {Mycobacterium tuberculosis} PDB: 1u2q_A
Probab=20.75 E-value=41 Score=27.13 Aligned_cols=38 Identities=16% Similarity=0.151 Sum_probs=26.6
Q ss_pred CcEEEEcC-CCCchHHHHHHHHHc----cCC-CeeEccccHHHH
Q 022972 173 TDLIVACQ-KGLRSLAACELLYNA----GYR-NLFWVQGGLEAA 210 (289)
Q Consensus 173 ~~IVvyC~-~G~RS~~aa~~L~~~----G~~-nV~~L~GG~~aw 210 (289)
.+|+++|. +-.||..|-.+|+.+ |.. ++.+...|..+|
T Consensus 5 ~~VLFVC~gN~cRSpmAEal~~~~~~~~gl~~~~~v~SAGt~~~ 48 (163)
T 1u2p_A 5 LHVTFVCTGNICRSPMAEKMFAQQLRHRGLGDAVRVTSAGTGNW 48 (163)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHHHHHHTTCTTTEEEEEEESSCT
T ss_pred CEEEEEcCCcHhHHHHHHHHHHHHHHHCCCCCcEEEEecccCCC
Confidence 46999996 444899888877775 442 466667777765
No 311
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=20.69 E-value=54 Score=29.23 Aligned_cols=45 Identities=18% Similarity=0.348 Sum_probs=34.5
Q ss_pred HHHHHhcCCCCCcEEEEcCCCCchHHHHHHHHHccCCCeeEccccHH
Q 022972 162 LSKVEEKLPKDTDLIVACQKGLRSLAACELLYNAGYRNLFWVQGGLE 208 (289)
Q Consensus 162 ~~~~~~~l~k~~~IVvyC~~G~RS~~aa~~L~~~G~~nV~~L~GG~~ 208 (289)
+..+.... +..+++|||++-..+..++..|...|+. +..+.|++.
T Consensus 249 l~~~~~~~-~~~~~lVf~~~~~~~~~l~~~L~~~~~~-~~~~~~~~~ 293 (400)
T 1s2m_A 249 LNTLFSKL-QINQAIIFCNSTNRVELLAKKITDLGYS-CYYSHARMK 293 (400)
T ss_dssp HHHHHHHS-CCSEEEEECSSHHHHHHHHHHHHHHTCC-EEEECTTSC
T ss_pred HHHHHhhc-CCCcEEEEEecHHHHHHHHHHHHhcCCC-eEEecCCCC
Confidence 33333333 4458999999877888999999999995 889999864
No 312
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=20.62 E-value=35 Score=27.43 Aligned_cols=22 Identities=23% Similarity=-0.031 Sum_probs=17.2
Q ss_pred Cccccccccccccchhhhhcccc
Q 022972 223 LKFAGIGGLSEFLGYTSQLCYPF 245 (289)
Q Consensus 223 ~~~~~~~G~t~~~Gkt~~l~~l~ 245 (289)
-...++-|.+ ++|||++++.++
T Consensus 26 ~~~v~lvG~~-g~GKSTLl~~l~ 47 (210)
T 1pui_A 26 GIEVAFAGRS-NAGKSSALNTLT 47 (210)
T ss_dssp SEEEEEEECT-TSSHHHHHTTTC
T ss_pred CcEEEEECCC-CCCHHHHHHHHh
Confidence 3446777888 499999999984
No 313
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=20.52 E-value=36 Score=35.30 Aligned_cols=39 Identities=15% Similarity=0.020 Sum_probs=33.5
Q ss_pred CCCCcEEEEcCCCCchHHHHHHHHHccCCCeeEccccHHH
Q 022972 170 PKDTDLIVACQKGLRSLAACELLYNAGYRNLFWVQGGLEA 209 (289)
Q Consensus 170 ~k~~~IVvyC~~G~RS~~aa~~L~~~G~~nV~~L~GG~~a 209 (289)
.++.+++|+|++-..|..++..|...|++ +..|.|....
T Consensus 430 ~~~~pvLVft~s~~~se~Ls~~L~~~gi~-~~vLhg~~~~ 468 (844)
T 1tf5_A 430 MTGQPVLVGTVAVETSELISKLLKNKGIP-HQVLNAKNHE 468 (844)
T ss_dssp HHTCCEEEEESCHHHHHHHHHHHHTTTCC-CEEECSSCHH
T ss_pred hcCCcEEEEECCHHHHHHHHHHHHHCCCC-EEEeeCCccH
Confidence 35678999999888899999999999997 7789998654
No 314
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=20.45 E-value=27 Score=31.25 Aligned_cols=28 Identities=11% Similarity=-0.129 Sum_probs=22.0
Q ss_pred CCccccccccccccchhhhhcccchhc-CC
Q 022972 222 PLKFAGIGGLSEFLGYTSQLCYPFLHI-SY 250 (289)
Q Consensus 222 ~~~~~~~~G~t~~~Gkt~~l~~l~~~~-g~ 250 (289)
+.+-..++|..| +|||.+.+.+|++. +.
T Consensus 44 ~~~~iLL~GppG-tGKT~la~ala~~~~~~ 72 (322)
T 1xwi_A 44 PWRGILLFGPPG-TGKSYLAKAVATEANNS 72 (322)
T ss_dssp CCSEEEEESSSS-SCHHHHHHHHHHHTTSC
T ss_pred CCceEEEECCCC-ccHHHHHHHHHHHcCCC
Confidence 445667889994 99999999997665 44
No 315
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=20.30 E-value=30 Score=26.78 Aligned_cols=23 Identities=9% Similarity=-0.018 Sum_probs=17.9
Q ss_pred ccccccccccchhhhhcccchhcC
Q 022972 226 AGIGGLSEFLGYTSQLCYPFLHIS 249 (289)
Q Consensus 226 ~~~~G~t~~~Gkt~~l~~l~~~~g 249 (289)
..+.|.+| +|||.+.|.++...+
T Consensus 30 vll~G~~G-tGKt~lA~~i~~~~~ 52 (143)
T 3co5_A 30 VFLTGEAG-SPFETVARYFHKNGT 52 (143)
T ss_dssp EEEEEETT-CCHHHHHGGGCCTTS
T ss_pred EEEECCCC-ccHHHHHHHHHHhCC
Confidence 56788884 999999999955444
No 316
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=20.20 E-value=30 Score=29.91 Aligned_cols=25 Identities=16% Similarity=-0.040 Sum_probs=19.9
Q ss_pred CCccccccccccccchhhhhcccchh
Q 022972 222 PLKFAGIGGLSEFLGYTSQLCYPFLH 247 (289)
Q Consensus 222 ~~~~~~~~G~t~~~Gkt~~l~~l~~~ 247 (289)
|.....+.|.+| +|||.+.+.+++.
T Consensus 46 ~~~~~ll~G~~G-tGKt~la~~la~~ 70 (311)
T 4fcw_A 46 PIGSFLFLGPTG-VGKTELAKTLAAT 70 (311)
T ss_dssp CSEEEEEESCSS-SSHHHHHHHHHHH
T ss_pred CceEEEEECCCC-cCHHHHHHHHHHH
Confidence 445678899995 9999999998554
No 317
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=20.17 E-value=28 Score=32.04 Aligned_cols=22 Identities=18% Similarity=0.218 Sum_probs=18.3
Q ss_pred CCccccccccccccchhhhhccc
Q 022972 222 PLKFAGIGGLSEFLGYTSQLCYP 244 (289)
Q Consensus 222 ~~~~~~~~G~t~~~Gkt~~l~~l 244 (289)
+-...++.|.|| .|||+.++.+
T Consensus 122 ~~g~i~I~GptG-SGKTTlL~~l 143 (356)
T 3jvv_A 122 PRGLVLVTGPTG-SGKSTTLAAM 143 (356)
T ss_dssp SSEEEEEECSTT-SCHHHHHHHH
T ss_pred CCCEEEEECCCC-CCHHHHHHHH
Confidence 345788999995 9999999986
No 318
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=20.14 E-value=54 Score=34.31 Aligned_cols=39 Identities=8% Similarity=-0.026 Sum_probs=33.9
Q ss_pred CCCCcEEEEcCCCCchHHHHHHHHHccCCCeeEccccHHH
Q 022972 170 PKDTDLIVACQKGLRSLAACELLYNAGYRNLFWVQGGLEA 209 (289)
Q Consensus 170 ~k~~~IVvyC~~G~RS~~aa~~L~~~G~~nV~~L~GG~~a 209 (289)
.+++|++|+|++-..|..++..|...|++ ...|.|....
T Consensus 458 ~~gqpvLVft~Sie~sE~Ls~~L~~~Gi~-~~vLnak~~~ 496 (922)
T 1nkt_A 458 AKGQPVLIGTTSVERSEYLSRQFTKRRIP-HNVLNAKYHE 496 (922)
T ss_dssp HTTCCEEEEESCHHHHHHHHHHHHHTTCC-CEEECSSCHH
T ss_pred hcCCcEEEEECCHHHHHHHHHHHHHCCCC-EEEecCChhH
Confidence 45679999999888899999999999997 7789988654
No 319
>3rd5_A Mypaa.01249.C; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; HET: EPE; 1.50A {Mycobacterium paratuberculosis}
Probab=20.10 E-value=8.1 Score=33.77 Aligned_cols=33 Identities=12% Similarity=-0.051 Sum_probs=23.7
Q ss_pred ccccccccccccchhhhhcccchhcCCCCcchhHHH
Q 022972 224 KFAGIGGLSEFLGYTSQLCYPFLHISYPSTSFSKMT 259 (289)
Q Consensus 224 ~~~~~~G~t~~~Gkt~~l~~l~~~~g~~~~~~~~~~ 259 (289)
+...++|-++|+|. .+.++| .++|+ +++...|-
T Consensus 17 k~vlVTGas~gIG~-~~a~~L-~~~G~-~V~~~~r~ 49 (291)
T 3rd5_A 17 RTVVITGANSGLGA-VTAREL-ARRGA-TVIMAVRD 49 (291)
T ss_dssp CEEEEECCSSHHHH-HHHHHH-HHTTC-EEEEEESC
T ss_pred CEEEEeCCCChHHH-HHHHHH-HHCCC-EEEEEECC
Confidence 45677888889997 555666 58899 67666653
No 320
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=20.05 E-value=71 Score=27.71 Aligned_cols=38 Identities=18% Similarity=0.299 Sum_probs=32.0
Q ss_pred CCCCcEEEEcCCCCchHHHHHHHHHccCCCeeEccccHH
Q 022972 170 PKDTDLIVACQKGLRSLAACELLYNAGYRNLFWVQGGLE 208 (289)
Q Consensus 170 ~k~~~IVvyC~~G~RS~~aa~~L~~~G~~nV~~L~GG~~ 208 (289)
.++.+++|||++-..+..++..|+..|++ +..+.|++.
T Consensus 236 ~~~~~~lvf~~~~~~~~~l~~~L~~~~~~-~~~~~~~~~ 273 (367)
T 1hv8_A 236 NKEFYGLVFCKTKRDTKELASMLRDIGFK-AGAIHGDLS 273 (367)
T ss_dssp STTCCEEEECSSHHHHHHHHHHHHHTTCC-EEEECSSSC
T ss_pred cCCCcEEEEECCHHHHHHHHHHHHhcCCC-eEEeeCCCC
Confidence 35567999999877888999999999995 889999864
No 321
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=20.03 E-value=16 Score=30.31 Aligned_cols=47 Identities=15% Similarity=0.070 Sum_probs=27.5
Q ss_pred HHccCCCeeEccccHHHHHhC---CCCccCCCCCccccccccccccchhhhhcccc
Q 022972 193 YNAGYRNLFWVQGGLEAAEEE---DLVREGPQPLKFAGIGGLSEFLGYTSQLCYPF 245 (289)
Q Consensus 193 ~~~G~~nV~~L~GG~~aw~~~---gl~~~~~~~~~~~~~~G~t~~~Gkt~~l~~l~ 245 (289)
+.+.++++..+.=|++...+. |+| +-....++|.+| +|||.+...+|
T Consensus 2 ~~~~~~~i~ri~TGi~~LD~~l~GGl~-----~G~l~~i~G~pG-~GKT~l~l~~~ 51 (251)
T 2zts_A 2 RIMAYQPVRRVKSGIPGFDELIEGGFP-----EGTTVLLTGGTG-TGKTTFAAQFI 51 (251)
T ss_dssp ------CCCEECCSCTTTGGGTTTSEE-----TTCEEEEECCTT-SSHHHHHHHHH
T ss_pred CccccCCCCeecCCcHHHHHhhcCCCC-----CCeEEEEEeCCC-CCHHHHHHHHH
Confidence 344555666666666555441 333 346778899984 99999987753
Done!