Query 022973
Match_columns 289
No_of_seqs 240 out of 1482
Neff 7.5
Searched_HMMs 46136
Date Fri Mar 29 07:31:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022973.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/022973hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF01657 Stress-antifung: Salt 99.9 2.5E-25 5.4E-30 174.6 8.0 98 36-133 1-106 (106)
2 PF01657 Stress-antifung: Salt 99.9 3.7E-22 8E-27 156.6 7.9 85 153-237 16-106 (106)
3 PF01102 Glycophorin_A: Glycop 96.2 0.0021 4.6E-08 51.4 1.2 33 252-284 62-94 (122)
4 PF08693 SKG6: Transmembrane a 95.4 0.01 2.2E-07 37.9 1.9 15 256-270 14-28 (40)
5 PF02439 Adeno_E3_CR2: Adenovi 95.2 0.02 4.4E-07 35.9 2.6 21 256-276 5-25 (38)
6 PF15102 TMEM154: TMEM154 prot 91.8 0.13 2.8E-06 42.3 2.4 15 256-270 58-72 (146)
7 PF08693 SKG6: Transmembrane a 91.7 0.061 1.3E-06 34.3 0.4 27 252-278 6-33 (40)
8 PTZ00382 Variant-specific surf 90.4 0.18 4E-06 38.6 2.0 21 251-271 63-83 (96)
9 PF02009 Rifin_STEVOR: Rifin/s 89.1 0.22 4.7E-06 46.1 1.7 15 52-66 35-49 (299)
10 PF14610 DUF4448: Protein of u 88.1 0.31 6.7E-06 41.9 2.0 27 254-280 157-183 (189)
11 PF01034 Syndecan: Syndecan do 87.4 0.17 3.7E-06 35.6 -0.0 20 255-274 10-29 (64)
12 PF04478 Mid2: Mid2 like cell 86.9 0.25 5.5E-06 40.9 0.7 21 256-276 51-71 (154)
13 PF08374 Protocadherin: Protoc 84.6 1.3 2.8E-05 38.7 4.0 22 256-278 40-61 (221)
14 PF12669 P12: Virus attachment 83.0 2.6 5.6E-05 29.2 4.2 6 259-264 2-7 (58)
15 PF05568 ASFV_J13L: African sw 82.3 0.94 2E-05 37.2 2.0 27 256-282 31-57 (189)
16 PHA03265 envelope glycoprotein 82.0 1.3 2.7E-05 41.6 3.0 26 256-281 349-375 (402)
17 PF04689 S1FA: DNA binding pro 81.8 3.5 7.7E-05 29.0 4.4 22 249-270 8-29 (69)
18 PF11857 DUF3377: Domain of un 81.2 2.5 5.4E-05 30.7 3.6 26 251-276 26-51 (74)
19 PF05454 DAG1: Dystroglycan (D 80.2 0.54 1.2E-05 43.2 0.0 9 184-192 101-109 (290)
20 PF01299 Lamp: Lysosome-associ 78.5 0.7 1.5E-05 42.8 0.2 26 254-279 270-295 (306)
21 PTZ00046 rifin; Provisional 78.0 1 2.2E-05 42.6 1.0 14 52-65 55-68 (358)
22 PF11884 DUF3404: Domain of un 78.0 1.1 2.3E-05 40.5 1.2 11 225-235 210-220 (262)
23 TIGR01477 RIFIN variant surfac 77.3 1.1 2.4E-05 42.2 1.1 15 52-66 58-72 (353)
24 PF15012 DUF4519: Domain of un 76.1 0.9 1.9E-05 31.1 0.1 25 254-278 28-52 (56)
25 PF12877 DUF3827: Domain of un 73.8 4 8.7E-05 41.3 4.0 26 79-104 78-103 (684)
26 PF08114 PMP1_2: ATPase proteo 73.2 5 0.00011 25.6 2.9 13 271-283 24-36 (43)
27 PF15345 TMEM51: Transmembrane 71.6 8.5 0.00018 34.1 5.1 25 256-281 59-85 (233)
28 KOG3488 Dolichol phosphate-man 69.9 5.3 0.00011 28.7 2.8 26 256-281 47-72 (81)
29 KOG3653 Transforming growth fa 69.8 11 0.00023 37.2 5.7 13 226-238 123-135 (534)
30 PF13268 DUF4059: Protein of u 67.0 8.8 0.00019 27.6 3.5 19 269-287 20-38 (72)
31 TIGR01478 STEVOR variant surfa 65.1 6.5 0.00014 35.9 3.1 15 51-65 57-71 (295)
32 PTZ00370 STEVOR; Provisional 61.8 7.1 0.00015 35.8 2.7 14 51-64 56-69 (296)
33 PF15099 PIRT: Phosphoinositid 60.1 4.3 9.2E-05 32.6 0.9 30 256-285 79-111 (129)
34 PF13908 Shisa: Wnt and FGF in 59.5 6.9 0.00015 33.1 2.2 9 257-265 78-86 (179)
35 PF02009 Rifin_STEVOR: Rifin/s 55.6 7.2 0.00016 36.1 1.8 6 282-287 285-290 (299)
36 KOG3637 Vitronectin receptor, 55.5 13 0.00027 40.4 3.8 27 254-280 976-1002(1030)
37 PLN03150 hypothetical protein; 55.0 12 0.00027 38.1 3.5 26 256-281 546-571 (623)
38 PF07297 DPM2: Dolichol phosph 51.4 14 0.00031 27.2 2.4 15 256-270 45-59 (78)
39 PF12768 Rax2: Cortical protei 51.2 27 0.00058 32.0 4.8 19 253-271 226-244 (281)
40 PF06697 DUF1191: Protein of u 50.4 9 0.00019 35.0 1.5 13 256-268 212-224 (278)
41 PF02480 Herpes_gE: Alphaherpe 48.8 5.7 0.00012 38.8 0.0 14 187-200 237-250 (439)
42 PRK01844 hypothetical protein; 47.2 11 0.00023 27.3 1.1 23 259-281 7-29 (72)
43 PF12877 DUF3827: Domain of un 45.2 21 0.00046 36.3 3.3 22 186-207 212-233 (684)
44 PF05454 DAG1: Dystroglycan (D 44.3 7.4 0.00016 35.9 0.0 11 267-277 161-171 (290)
45 KOG1226 Integrin beta subunit 44.0 29 0.00063 36.0 4.1 29 253-281 710-738 (783)
46 PF05808 Podoplanin: Podoplani 43.8 7.6 0.00017 32.5 0.0 27 253-279 128-155 (162)
47 PHA02650 hypothetical protein; 43.0 23 0.00051 26.0 2.4 19 271-289 63-81 (81)
48 PF14914 LRRC37AB_C: LRRC37A/B 42.9 16 0.00035 30.1 1.7 25 255-279 121-145 (154)
49 TIGR02976 phageshock_pspB phag 42.7 30 0.00064 25.3 2.9 10 259-268 6-15 (75)
50 PF15176 LRR19-TM: Leucine-ric 42.3 25 0.00053 27.1 2.5 17 254-270 14-30 (102)
51 PF04478 Mid2: Mid2 like cell 42.1 7.4 0.00016 32.3 -0.3 28 254-281 45-73 (154)
52 PF06697 DUF1191: Protein of u 40.4 36 0.00079 31.2 3.8 22 248-269 207-229 (278)
53 PF09835 DUF2062: Uncharacteri 40.0 20 0.00043 29.4 1.9 11 277-287 143-153 (154)
54 PF13908 Shisa: Wnt and FGF in 40.0 17 0.00037 30.7 1.6 20 252-271 77-96 (179)
55 PF06667 PspB: Phage shock pro 38.8 40 0.00086 24.6 3.1 10 259-268 6-15 (75)
56 PRK00523 hypothetical protein; 38.1 18 0.00039 26.2 1.1 24 258-281 7-30 (72)
57 PF13955 Fst_toxin: Toxin Fst, 38.1 20 0.00044 19.5 1.1 13 259-271 4-16 (21)
58 PTZ00045 apical membrane antig 37.0 37 0.00079 34.2 3.5 15 94-108 207-221 (595)
59 PF00558 Vpu: Vpu protein; In 36.8 8.5 0.00018 28.5 -0.7 6 261-266 7-12 (81)
60 PF12191 stn_TNFRSF12A: Tumour 36.2 8.4 0.00018 30.9 -0.8 7 278-284 101-107 (129)
61 PF01708 Gemini_mov: Geminivir 35.9 1.5E+02 0.0032 22.4 5.7 25 253-277 34-58 (91)
62 PF07213 DAP10: DAP10 membrane 35.5 29 0.00062 25.6 1.9 12 277-288 58-69 (79)
63 PF05568 ASFV_J13L: African sw 35.4 35 0.00076 28.2 2.6 14 258-271 29-42 (189)
64 PTZ00087 thrombosponding-relat 35.3 46 0.00099 30.4 3.5 23 252-274 294-316 (340)
65 PF03302 VSP: Giardia variant- 34.8 31 0.00067 33.3 2.6 15 254-268 367-381 (397)
66 TIGR01477 RIFIN variant surfac 34.4 21 0.00045 33.8 1.3 26 91-116 126-151 (353)
67 PTZ00046 rifin; Provisional 34.2 21 0.00046 33.8 1.3 26 91-116 123-148 (358)
68 COG3197 FixS Uncharacterized p 33.7 61 0.0013 22.4 3.1 16 256-271 3-18 (58)
69 PF01102 Glycophorin_A: Glycop 33.6 29 0.00063 27.8 1.8 29 260-288 66-95 (122)
70 PF06365 CD34_antigen: CD34/Po 33.5 69 0.0015 27.9 4.3 6 276-281 123-128 (202)
71 PF02430 AMA-1: Apical membran 32.9 14 0.00031 35.9 0.0 23 257-279 430-452 (471)
72 PF08374 Protocadherin: Protoc 32.8 28 0.00061 30.6 1.7 26 256-281 36-61 (221)
73 PTZ00382 Variant-specific surf 32.2 22 0.00048 27.1 0.9 6 198-203 28-33 (96)
74 COG1862 YajC Preprotein transl 32.0 13 0.00028 28.6 -0.4 10 271-280 20-29 (97)
75 PRK15471 chain length determin 31.8 44 0.00095 31.3 3.0 23 246-268 285-307 (325)
76 COG3763 Uncharacterized protei 31.6 20 0.00044 25.7 0.6 11 272-282 20-30 (71)
77 PRK01821 hypothetical protein; 31.3 31 0.00068 28.0 1.7 14 276-289 117-130 (133)
78 PF15431 TMEM190: Transmembran 30.9 60 0.0013 25.5 3.1 20 264-283 68-87 (134)
79 PF03229 Alpha_GJ: Alphavirus 30.4 71 0.0015 25.3 3.4 28 254-281 83-111 (126)
80 PF12606 RELT: Tumour necrosis 29.3 61 0.0013 21.7 2.5 19 257-275 3-21 (50)
81 PF06024 DUF912: Nucleopolyhed 29.3 5.8 0.00013 30.6 -2.8 16 256-271 61-76 (101)
82 PF14991 MLANA: Protein melan- 28.8 16 0.00034 28.9 -0.4 11 270-280 40-50 (118)
83 PF12768 Rax2: Cortical protei 28.1 44 0.00095 30.7 2.3 26 256-281 233-258 (281)
84 TIGR00739 yajC preprotein tran 27.7 21 0.00045 26.5 0.1 8 272-279 15-22 (84)
85 TIGR01478 STEVOR variant surfa 27.6 73 0.0016 29.3 3.5 16 269-284 274-289 (295)
86 PF05083 LST1: LST-1 protein; 27.5 80 0.0017 22.7 3.0 20 266-285 8-27 (74)
87 PHA03099 epidermal growth fact 26.4 39 0.00084 27.3 1.4 7 227-233 57-63 (139)
88 PF04246 RseC_MucC: Positive r 26.3 92 0.002 24.9 3.7 16 186-204 8-23 (135)
89 PHA03265 envelope glycoprotein 26.3 93 0.002 29.5 4.0 35 253-288 350-385 (402)
90 PF00974 Rhabdo_glycop: Rhabdo 25.4 23 0.00051 35.2 0.0 15 184-198 341-355 (501)
91 PF05393 Hum_adeno_E3A: Human 25.3 1.1E+02 0.0024 23.1 3.5 11 261-271 37-47 (94)
92 PTZ00370 STEVOR; Provisional 24.5 78 0.0017 29.1 3.2 15 269-283 270-284 (296)
93 PF12575 DUF3753: Protein of u 24.1 33 0.00071 24.8 0.6 19 258-276 50-68 (72)
94 COG3765 WzzB Chain length dete 24.0 76 0.0016 30.0 3.0 24 244-267 305-328 (347)
95 PTZ00230 variable surface prot 23.4 1.4E+02 0.0031 28.4 4.9 23 251-273 288-310 (364)
96 PRK14766 lipoprotein signal pe 22.8 25 0.00053 30.7 -0.4 16 257-272 162-177 (201)
97 PF05337 CSF-1: Macrophage col 22.2 29 0.00064 31.6 0.0 28 256-283 227-254 (285)
98 PF10883 DUF2681: Protein of u 22.2 61 0.0013 24.4 1.7 15 261-275 7-21 (87)
99 PF12301 CD99L2: CD99 antigen 22.2 93 0.002 26.4 3.0 10 259-268 116-125 (169)
100 KOG1094 Discoidin domain recep 22.2 73 0.0016 32.6 2.7 8 45-52 42-49 (807)
101 PRK10381 LPS O-antigen length 20.3 90 0.002 29.8 2.9 26 244-269 327-352 (377)
102 PTZ00208 65 kDa invariant surf 20.1 18 0.00039 34.7 -1.9 11 217-227 316-326 (436)
No 1
>PF01657 Stress-antifung: Salt stress response/antifungal; InterPro: IPR002902 This domain is found in plants and has no known function. The structure of this domain is known and it is thought to be involved in antifungal responses in plants []. Two copies of this domain are also found together in cysteine-rich protein kinases and cysteine-rich repeat secretory proteins. The domain contains four conserved cysteines.; PDB: 3A2E_D.
Probab=99.92 E-value=2.5e-25 Score=174.63 Aligned_cols=98 Identities=42% Similarity=0.796 Sum_probs=75.3
Q ss_pred ccCCC---CCCC-CCCChhHHHHHHHHHHHHhhhccC---CcceeeccC-CCcEEEEEecCCCCChhhHHHHHHHHHHHH
Q 022973 36 FGGCS---QQKY-TPGSAYENSVNSMLTSLVNSAMFS---SYNNFTIQG-QQTLYGLFQCRGDLSTADCGRCVAHAVSQL 107 (289)
Q Consensus 36 ~~~C~---~~~~-~~~s~f~~nl~~ll~~L~~~a~~~---~f~~~~~g~-~~~vYgl~qCr~Dls~~~C~~Cl~~a~~~~ 107 (289)
|+.|+ +++| +++++|+.+++.||.+|+..++.. +|++...|. ++++|||+||++|+++++|..||+.++..+
T Consensus 1 ~~~Cs~~~~~~~~~~~~~f~~~l~~ll~~l~~~a~~~~~~~f~~~~~~~~~~~vYgl~qC~~Dls~~dC~~Cl~~a~~~~ 80 (106)
T PF01657_consen 1 WHFCSSNTNNNYTTDNSTFEQNLNSLLSSLVSNAASSSSKGFATGSAGSGPDTVYGLAQCRGDLSPSDCRACLADAVANI 80 (106)
T ss_dssp ---E---SSB----TT-THHHHHHHHHHHHHHHGGGTT-TEEEEEE--ST---EEEEEEE-TTS-HHHHHHHHHHHHCCH
T ss_pred CCcCCCCCCCCcCCCCchHHHHHHHHHHHHHHHHhhccccCcEEeecCCCCCeEEEEEEcCCCCChhhhHHHHHHHHHHH
Confidence 67899 3566 578889999999999999998763 577776666 899999999999999999999999999999
Q ss_pred hhhCCCCceEEEEcCeEEEEEccCcc
Q 022973 108 GTLCLDSCGGVLQLDGCFVKYDNISF 133 (289)
Q Consensus 108 ~~~C~~~~~a~i~~~~C~lRYs~~~F 133 (289)
++.|+.++||+||+++|+||||+++|
T Consensus 81 ~~~C~~~~g~~v~~~~C~lRY~~~~F 106 (106)
T PF01657_consen 81 SSCCPGSRGGRVWYDSCFLRYENYPF 106 (106)
T ss_dssp HHHTTSBSSEEEEESSEEEEEESS--
T ss_pred HHhCCCCceEEEECCCEEEEEECCCC
Confidence 99999999999999999999999998
No 2
>PF01657 Stress-antifung: Salt stress response/antifungal; InterPro: IPR002902 This domain is found in plants and has no known function. The structure of this domain is known and it is thought to be involved in antifungal responses in plants []. Two copies of this domain are also found together in cysteine-rich protein kinases and cysteine-rich repeat secretory proteins. The domain contains four conserved cysteines.; PDB: 3A2E_D.
Probab=99.87 E-value=3.7e-22 Score=156.61 Aligned_cols=85 Identities=33% Similarity=0.633 Sum_probs=68.3
Q ss_pred ChhHHHHHHHHHHHhhhcCC--CCCCeeec----CCCcEEEEEEcCCCCChhhHHHHHHHHHHHhhhhCCCCcceEEEcC
Q 022973 153 DSDASTRRDAVLGYLGSSDG--SYKPYRVG----GSGDVTGVAQCVGDLSASECQDCLSDAIGRLKTDCGAAKWGDMFLA 226 (289)
Q Consensus 153 ~~~f~~~~~~ll~~l~~~~~--~~~~f~~~----~~~~vYglaQC~~DLs~~~C~~CL~~a~~~i~~~c~~~~ggri~~~ 226 (289)
++.|++++.+||..|...+. .+.+|+++ +.++||||+||++||++++|..||+.++.+++++|+.++||+|+++
T Consensus 16 ~~~f~~~l~~ll~~l~~~a~~~~~~~f~~~~~~~~~~~vYgl~qC~~Dls~~dC~~Cl~~a~~~~~~~C~~~~g~~v~~~ 95 (106)
T PF01657_consen 16 NSTFEQNLNSLLSSLVSNAASSSSKGFATGSAGSGPDTVYGLAQCRGDLSPSDCRACLADAVANISSCCPGSRGGRVWYD 95 (106)
T ss_dssp T-THHHHHHHHHHHHHHHGGGTT-TEEEEEE--ST---EEEEEEE-TTS-HHHHHHHHHHHHCCHHHHTTSBSSEEEEES
T ss_pred CchHHHHHHHHHHHHHHHHhhccccCcEEeecCCCCCeEEEEEEcCCCCChhhhHHHHHHHHHHHHHhCCCCceEEEECC
Confidence 45699999999999975422 12568775 4668999999999999999999999999999999999999999999
Q ss_pred CeeEEEccCCC
Q 022973 227 KCYARYSEGGD 237 (289)
Q Consensus 227 ~C~lRYe~~~f 237 (289)
+|+||||+++|
T Consensus 96 ~C~lRY~~~~F 106 (106)
T PF01657_consen 96 SCFLRYENYPF 106 (106)
T ss_dssp SEEEEEESS--
T ss_pred CEEEEEECCCC
Confidence 99999999987
No 3
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=96.17 E-value=0.0021 Score=51.42 Aligned_cols=33 Identities=21% Similarity=0.383 Sum_probs=21.3
Q ss_pred CcceEEEEehHHHHHHHHHHHHHHHHHHHhhcC
Q 022973 252 EIEKTLAILIGMIAGIALLVIFLSSIRRLCDGK 284 (289)
Q Consensus 252 ~~~~~~~Ivv~~~~~~~~~~~~~~~~~~~~~~~ 284 (289)
+...++.||+|++++++++|+++.|+.||++||
T Consensus 62 s~~~i~~Ii~gv~aGvIg~Illi~y~irR~~Kk 94 (122)
T PF01102_consen 62 SEPAIIGIIFGVMAGVIGIILLISYCIRRLRKK 94 (122)
T ss_dssp S-TCHHHHHHHHHHHHHHHHHHHHHHHHHHS--
T ss_pred cccceeehhHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 345578899999999887776665554444443
No 4
>PF08693 SKG6: Transmembrane alpha-helix domain; InterPro: IPR014805 SKG6 and AXL2 are membrane proteins that show polarised intracellular localisation [, ]. This entry represents the highly conserved transmembrane alpha-helical domain found in these proteins [, ]. The full-length AXL2 protein has a negative regulatory function in cytokinesis [].
Probab=95.45 E-value=0.01 Score=37.88 Aligned_cols=15 Identities=13% Similarity=0.246 Sum_probs=7.8
Q ss_pred EEEEehHHHHHHHHH
Q 022973 256 TLAILIGMIAGIALL 270 (289)
Q Consensus 256 ~~~Ivv~~~~~~~~~ 270 (289)
.++++||+++.++++
T Consensus 14 a~~VvVPV~vI~~vl 28 (40)
T PF08693_consen 14 AVGVVVPVGVIIIVL 28 (40)
T ss_pred EEEEEechHHHHHHH
Confidence 355567765543333
No 5
>PF02439 Adeno_E3_CR2: Adenovirus E3 region protein CR2; InterPro: IPR003470 Early region 3 (E3) of human adenoviruses (Ads) codes for proteins that appear to control viral interactions with the host []. This region called CR1 (conserved region 1) [] is found three times in Human adenovirus 19 (a subgroup D adenovirus) 49 kDa protein in the E3 region. CR1 is also found in the 20.1 Kd protein of subgroup B adenoviruses. The function of this 80 amino acid region is unknown. This region is probably a divergent immunoglobulin domain.
Probab=95.17 E-value=0.02 Score=35.88 Aligned_cols=21 Identities=29% Similarity=0.705 Sum_probs=16.6
Q ss_pred EEEEehHHHHHHHHHHHHHHH
Q 022973 256 TLAILIGMIAGIALLVIFLSS 276 (289)
Q Consensus 256 ~~~Ivv~~~~~~~~~~~~~~~ 276 (289)
+++||++++++++++++++++
T Consensus 5 ~IaIIv~V~vg~~iiii~~~~ 25 (38)
T PF02439_consen 5 TIAIIVAVVVGMAIIIICMFY 25 (38)
T ss_pred hhhHHHHHHHHHHHHHHHHHH
Confidence 688999999998877765554
No 6
>PF15102 TMEM154: TMEM154 protein family
Probab=91.75 E-value=0.13 Score=42.30 Aligned_cols=15 Identities=40% Similarity=0.518 Sum_probs=9.6
Q ss_pred EEEEehHHHHHHHHH
Q 022973 256 TLAILIGMIAGIALL 270 (289)
Q Consensus 256 ~~~Ivv~~~~~~~~~ 270 (289)
++.|+||.|+.++|+
T Consensus 58 iLmIlIP~VLLvlLL 72 (146)
T PF15102_consen 58 ILMILIPLVLLVLLL 72 (146)
T ss_pred EEEEeHHHHHHHHHH
Confidence 788889955444333
No 7
>PF08693 SKG6: Transmembrane alpha-helix domain; InterPro: IPR014805 SKG6 and AXL2 are membrane proteins that show polarised intracellular localisation [, ]. This entry represents the highly conserved transmembrane alpha-helical domain found in these proteins [, ]. The full-length AXL2 protein has a negative regulatory function in cytokinesis [].
Probab=91.75 E-value=0.061 Score=34.32 Aligned_cols=27 Identities=22% Similarity=0.471 Sum_probs=19.7
Q ss_pred CcceEEEEehHHHHHHHHHHHHH-HHHH
Q 022973 252 EIEKTLAILIGMIAGIALLVIFL-SSIR 278 (289)
Q Consensus 252 ~~~~~~~Ivv~~~~~~~~~~~~~-~~~~ 278 (289)
+..+.++|.+++++.++++++.+ .|+.
T Consensus 6 ~~~~~vaIa~~VvVPV~vI~~vl~~~l~ 33 (40)
T PF08693_consen 6 SNSNTVAIAVGVVVPVGVIIIVLGAFLF 33 (40)
T ss_pred CCCceEEEEEEEEechHHHHHHHHHHhh
Confidence 44568999999999987776554 4444
No 8
>PTZ00382 Variant-specific surface protein (VSP); Provisional
Probab=90.42 E-value=0.18 Score=38.64 Aligned_cols=21 Identities=19% Similarity=0.164 Sum_probs=13.5
Q ss_pred CCcceEEEEehHHHHHHHHHH
Q 022973 251 EEIEKTLAILIGMIAGIALLV 271 (289)
Q Consensus 251 ~~~~~~~~Ivv~~~~~~~~~~ 271 (289)
.+.+.|..|+|++++++.+++
T Consensus 63 ls~gaiagi~vg~~~~v~~lv 83 (96)
T PTZ00382 63 LSTGAIAGISVAVVAVVGGLV 83 (96)
T ss_pred cccccEEEEEeehhhHHHHHH
Confidence 345568888888766554444
No 9
>PF02009 Rifin_STEVOR: Rifin/stevor family; InterPro: IPR002858 Malaria is still a major cause of mortality in many areas of the world. Plasmodium falciparum causes the most severe human form of the disease and is responsible for most fatalities. Severe cases of malaria can occur when the parasite invades and then proliferates within red blood cell erythrocytes. The parasite produces many variant antigenic proteins, encoded by multigene families, which are present on the surface of the infected erythrocyte and play important roles in virulence. A crucial survival mechanism for the malaria parasite is its ability to evade the immune response by switching these variant surface antigens. The high virulence of P. falciparum relative to other malarial parasites is in large part due to the fact that in this organism many of these surface antigens mediate the binding of infected erythrocytes to the vascular endothelium (cytoadherence) and non-infected erythrocytes (rosetting). This can lead to the accumulation of infected cells in the vasculature of a variety of organs, blocking the blood flow and reducing the oxygen supply. Clinical symptoms of severe infection can include fever, progressive anaemia, multi-organ dysfunction and coma. For more information see []. Several multicopy gene families have been described in Plasmodium falciparum, including the stevor family of subtelomeric open reading frames and the rif interspersed repetitive elements. Both families contain three predicted transmembrane segments. It has been proposed that stevor and rif are members of a larger superfamily that code for variant surface antigens [].
Probab=89.06 E-value=0.22 Score=46.07 Aligned_cols=15 Identities=7% Similarity=0.177 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHhhhc
Q 022973 52 NSVNSMLTSLVNSAM 66 (289)
Q Consensus 52 ~nl~~ll~~L~~~a~ 66 (289)
...++++...-..++
T Consensus 35 PeMK~Vme~F~rqTs 49 (299)
T PF02009_consen 35 PEMKSVMENFDRQTS 49 (299)
T ss_pred HHHHHHHHHHHHHHH
Confidence 567777777766654
No 10
>PF14610 DUF4448: Protein of unknown function (DUF4448)
Probab=88.06 E-value=0.31 Score=41.89 Aligned_cols=27 Identities=15% Similarity=0.181 Sum_probs=18.1
Q ss_pred ceEEEEehHHHHHHHHHHHHHHHHHHH
Q 022973 254 EKTLAILIGMIAGIALLVIFLSSIRRL 280 (289)
Q Consensus 254 ~~~~~Ivv~~~~~~~~~~~~~~~~~~~ 280 (289)
...++|+||++++++++++.++++|.|
T Consensus 157 ~~~laI~lPvvv~~~~~~~~~~~~~~R 183 (189)
T PF14610_consen 157 KYALAIALPVVVVVLALIMYGFFFWNR 183 (189)
T ss_pred ceeEEEEccHHHHHHHHHHHhhheeec
Confidence 347999999988776666544444433
No 11
>PF01034 Syndecan: Syndecan domain; InterPro: IPR001050 The syndecans are transmembrane proteoglycans which are involved in the organisation of cytoskeleton and/or actin microfilaments, and have important roles as cell surface receptors during cell-cell and/or cell-matrix interactions [, ]. Structurally, these proteins consist of four separate domains: A signal sequence; An extracellular domain (ectodomain) of variable length whose sequence is not evolutionary conserved in the various forms of syndecans. The ectodomain contains the sites of attachment of the heparan sulphate glycosaminoglycan side chains; A transmembrane region; A highly conserved cytoplasmic domain of about 30 to 35 residues, which could interact with cytoskeletal proteins. The proteins known to belong to this family are: Syndecan 1. Syndecan 2 or fibroglycan. Syndecan 3 or neuroglycan or N-syndecan. Syndecan 4 or amphiglycan or ryudocan. Drosophila syndecan. Caenorhabditis elegans probable syndecan (F57C7.3). Syndecan-4, a transmembrane heparan sulphate proteoglycan, is a coreceptor with integrins in cell adhesion. It has been suggested to form a ternary signalling complex with protein kinase Calpha and phosphatidylinositol 4,5-bisphosphate (PIP2). Structural studies have demonstrated that the cytoplasmic domain undergoes a conformational transition and forms a symmetric dimer in the presence of phospholipid activator PIP2, and whose overall structure in solution exhibits a twisted clamp shape having a cavity in the centre of dimeric interface. In addition, it has been observed that the syndecan-4 variable domain interacts, strongly, not only with fatty acyl groups but also the anionic head group of PIP2. These findings indicate that PIP2 promotes oligomerisation of the syndecan-4 cytoplasmic domain for transmembrane signalling and cell-matrix adhesion [, ].; GO: 0008092 cytoskeletal protein binding, 0016020 membrane; PDB: 1EJQ_B 1EJP_B 1YBO_C 1OBY_Q.
Probab=87.40 E-value=0.17 Score=35.59 Aligned_cols=20 Identities=15% Similarity=0.489 Sum_probs=0.0
Q ss_pred eEEEEehHHHHHHHHHHHHH
Q 022973 255 KTLAILIGMIAGIALLVIFL 274 (289)
Q Consensus 255 ~~~~Ivv~~~~~~~~~~~~~ 274 (289)
...++|.++++++++.++++
T Consensus 10 vlaavIaG~Vvgll~ailLI 29 (64)
T PF01034_consen 10 VLAAVIAGGVVGLLFAILLI 29 (64)
T ss_dssp --------------------
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 35667777766655444333
No 12
>PF04478 Mid2: Mid2 like cell wall stress sensor; InterPro: IPR007567 This family represents a region near the C terminus of Mid2, which contains a transmembrane region. The remainder of the protein sequence is serine-rich and of low complexity, and is therefore impossible to align accurately. Mid2 is thought to act as a mechanosensor of cell wall stress. The C-terminal cytoplasmic region of Mid2 is known to interact with Rom2, a guanine nucleotide exchange factor (GEF) for Rho1, which is part of the cell wall integrity signalling pathway [].
Probab=86.93 E-value=0.25 Score=40.88 Aligned_cols=21 Identities=19% Similarity=0.320 Sum_probs=11.6
Q ss_pred EEEEehHHHHHHHHHHHHHHH
Q 022973 256 TLAILIGMIAGIALLVIFLSS 276 (289)
Q Consensus 256 ~~~Ivv~~~~~~~~~~~~~~~ 276 (289)
+|-+||||-+++++++++++|
T Consensus 51 VIGvVVGVGg~ill~il~lvf 71 (154)
T PF04478_consen 51 VIGVVVGVGGPILLGILALVF 71 (154)
T ss_pred EEEEEecccHHHHHHHHHhhe
Confidence 566677765555544444444
No 13
>PF08374 Protocadherin: Protocadherin; InterPro: IPR013585 The structure of protocadherins is similar to that of classic cadherins (IPR002126 from INTERPRO), but they also have some unique features associated with the cytoplasmic domains. They are expressed in a variety of organisms and are found in high concentrations in the brain where they seem to be localised mainly at cell-cell contact sites. Their expression seems to be developmentally regulated [].
Probab=84.65 E-value=1.3 Score=38.75 Aligned_cols=22 Identities=27% Similarity=0.605 Sum_probs=10.5
Q ss_pred EEEEehHHHHHHHHHHHHHHHHH
Q 022973 256 TLAILIGMIAGIALLVIFLSSIR 278 (289)
Q Consensus 256 ~~~Ivv~~~~~~~~~~~~~~~~~ 278 (289)
+++||.|+++++ |+|++..++|
T Consensus 40 ~iaiVAG~~tVI-LVI~i~v~vR 61 (221)
T PF08374_consen 40 MIAIVAGIMTVI-LVIFIVVLVR 61 (221)
T ss_pred eeeeecchhhhH-HHHHHHHHHH
Confidence 456666655433 3333333444
No 14
>PF12669 P12: Virus attachment protein p12 family
Probab=82.99 E-value=2.6 Score=29.19 Aligned_cols=6 Identities=67% Similarity=1.326 Sum_probs=2.6
Q ss_pred EehHHH
Q 022973 259 ILIGMI 264 (289)
Q Consensus 259 Ivv~~~ 264 (289)
|||+++
T Consensus 2 iII~~I 7 (58)
T PF12669_consen 2 IIIGII 7 (58)
T ss_pred eeHHHH
Confidence 444443
No 15
>PF05568 ASFV_J13L: African swine fever virus J13L protein; InterPro: IPR008385 This family consists of several African swine fever virus (ASFV) j13L proteins [, , ].
Probab=82.26 E-value=0.94 Score=37.16 Aligned_cols=27 Identities=15% Similarity=0.293 Sum_probs=15.3
Q ss_pred EEEEehHHHHHHHHHHHHHHHHHHHhh
Q 022973 256 TLAILIGMIAGIALLVIFLSSIRRLCD 282 (289)
Q Consensus 256 ~~~Ivv~~~~~~~~~~~~~~~~~~~~~ 282 (289)
...|+|+|++.++++++.++|+.+|+|
T Consensus 31 m~tILiaIvVliiiiivli~lcssRKk 57 (189)
T PF05568_consen 31 MYTILIAIVVLIIIIIVLIYLCSSRKK 57 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhH
Confidence 345667777666655555555444443
No 16
>PHA03265 envelope glycoprotein D; Provisional
Probab=82.01 E-value=1.3 Score=41.55 Aligned_cols=26 Identities=31% Similarity=0.363 Sum_probs=12.0
Q ss_pred EEEEehH-HHHHHHHHHHHHHHHHHHh
Q 022973 256 TLAILIG-MIAGIALLVIFLSSIRRLC 281 (289)
Q Consensus 256 ~~~Ivv~-~~~~~~~~~~~~~~~~~~~ 281 (289)
.+-|+|| .+++++++-+++++.|||+
T Consensus 349 ~~g~~ig~~i~glv~vg~il~~~~rr~ 375 (402)
T PHA03265 349 FVGISVGLGIAGLVLVGVILYVCLRRK 375 (402)
T ss_pred ccceEEccchhhhhhhhHHHHHHhhhh
Confidence 3334443 3445554444444555544
No 17
>PF04689 S1FA: DNA binding protein S1FA; InterPro: IPR006779 S1FA is an unusual small plant peptide of only 70 amino acids with a basic domain which contains a nuclear localization signal and a putative DNA binding helix. S1FA is highly conserved between dicotyledonous and monocotyledonous plants and may be a DNA-binding protein that specifically recognises the negative promoter element S1F [].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=81.83 E-value=3.5 Score=28.96 Aligned_cols=22 Identities=5% Similarity=0.033 Sum_probs=12.6
Q ss_pred CCCCcceEEEEehHHHHHHHHH
Q 022973 249 NDEEIEKTLAILIGMIAGIALL 270 (289)
Q Consensus 249 ~~~~~~~~~~Ivv~~~~~~~~~ 270 (289)
++-+.+.|+.|+|+-++.++++
T Consensus 8 KGlnPGlIVLlvV~g~ll~flv 29 (69)
T PF04689_consen 8 KGLNPGLIVLLVVAGLLLVFLV 29 (69)
T ss_pred cCCCCCeEEeehHHHHHHHHHH
Confidence 4445566777777665544433
No 18
>PF11857 DUF3377: Domain of unknown function (DUF3377); InterPro: IPR021805 This domain is functionally uncharacterised and found at the C terminus of peptidases belonging to MEROPS peptidase family M10A, membrane-type matrix metallopeptidases (clan MA). ; GO: 0004222 metalloendopeptidase activity
Probab=81.16 E-value=2.5 Score=30.68 Aligned_cols=26 Identities=15% Similarity=0.331 Sum_probs=18.6
Q ss_pred CCcceEEEEehHHHHHHHHHHHHHHH
Q 022973 251 EEIEKTLAILIGMIAGIALLVIFLSS 276 (289)
Q Consensus 251 ~~~~~~~~Ivv~~~~~~~~~~~~~~~ 276 (289)
.+..+.++||||.+.++.++++.+..
T Consensus 26 ~~~~~avaVviPl~L~LCiLvl~yai 51 (74)
T PF11857_consen 26 GGTVNAVAVVIPLVLLLCILVLIYAI 51 (74)
T ss_pred CCceeEEEEeHHHHHHHHHHHHHHHh
Confidence 34455899999998887777655543
No 19
>PF05454 DAG1: Dystroglycan (Dystrophin-associated glycoprotein 1); InterPro: IPR008465 Dystroglycan is one of the dystrophin-associated glycoproteins, which is encoded by a 5.5 kb transcript in Homo sapiens. The protein product is cleaved into two non-covalently associated subunits, [alpha] (N-terminal) and [beta] (C-terminal). In skeletal muscle the dystroglycan complex works as a transmembrane linkage between the extracellular matrix and the cytoskeleton [alpha]-dystroglycan is extracellular and binds to merosin ([alpha]-2 laminin) in the basement membrane, while [beta]-dystroglycan is a transmembrane protein and binds to dystrophin, which is a large rod-like cytoskeletal protein, absent in Duchenne muscular dystrophy patients. Dystrophin binds to intracellular actin cables. In this way, the dystroglycan complex, which links the extracellular matrix to the intracellular actin cables, is thought to provide structural integrity in muscle tissues. The dystroglycan complex is also known to serve as an agrin receptor in muscle, where it may regulate agrin-induced acetylcholine receptor clustering at the neuromuscular junction. There is also evidence which suggests the function of dystroglycan as a part of the signal transduction pathway because it is shown that Grb2, a mediator of the Ras-related signal pathway, can interact with the cytoplasmic domain of dystroglycan. In general, aberrant expression of dystrophin-associated protein complex underlies the pathogenesis of Duchenne muscular dystrophy, Becker muscular dystrophy and severe childhood autosomal recessive muscular dystrophy. Interestingly, no genetic disease has been described for either [alpha]- or [beta]-dystroglycan. Dystroglycan is widely distributed in non-muscle tissues as well as in muscle tissues. During epithelial morphogenesis of kidney, the dystroglycan complex is shown to act as a receptor for the basement membrane. Dystroglycan expression in Mus musculus brain and neural retina has also been reported. However, the physiological role of dystroglycan in non-muscle tissues has remained unclear [].; PDB: 1EG4_P.
Probab=80.25 E-value=0.54 Score=43.24 Aligned_cols=9 Identities=22% Similarity=0.575 Sum_probs=0.0
Q ss_pred cEEEEEEcC
Q 022973 184 DVTGVAQCV 192 (289)
Q Consensus 184 ~vYglaQC~ 192 (289)
++.++.+|.
T Consensus 101 sv~~~G~C~ 109 (290)
T PF05454_consen 101 SVIPIGSCQ 109 (290)
T ss_dssp ---------
T ss_pred EEEEeeccC
Confidence 566777776
No 20
>PF01299 Lamp: Lysosome-associated membrane glycoprotein (Lamp); InterPro: IPR002000 Lysosome-associated membrane glycoproteins (lamp) [] are integral membrane proteins, specific to lysosomes, and whose exact biological function is not yet clear. Structurally, the lamp proteins consist of two internally homologous lysosome-luminal domains separated by a proline-rich hinge region; at the C-terminal extremity there is a transmembrane region (TM) followed by a very short cytoplasmic tail (C). In each of the duplicated domains, there are two conserved disulphide bonds. This structure is schematically represented in the figure below. +-----+ +-----+ +-----+ +-----+ | | | | | | | | xCxxxxxCxxxxxxxxxxxxCxxxxxCxxxxxxxxxCxxxxxCxxxxxxxxxxxxCxxxxxCxxxxxxxx +--------------------------++Hinge++--------------------------++TM++C+ In mammals, there are two closely related types of lamp: lamp-1 and lamp-2, which form major components of the lysosome membrane. In chicken lamp-1 is known as LEP100. Also included in this entry is the macrophage protein CD68 (or macrosialin) [] is a heavily glycosylated integral membrane protein whose structure consists of a mucin-like domain followed by a proline-rich hinge; a single lamp-like domain; a transmembrane region and a short cytoplasmic tail. Similar to CD68, mammalian lamp-3, which is expressed in lymphoid organs, dendritic cells and in lung, contains all the C-terminal regions but lacks the N-terminal lamp-like region []. In a lamp-family protein from nematodes [] only the part C-terminal to the hinge is conserved. ; GO: 0016020 membrane
Probab=78.50 E-value=0.7 Score=42.79 Aligned_cols=26 Identities=12% Similarity=0.277 Sum_probs=15.2
Q ss_pred ceEEEEehHHHHHHHHHHHHHHHHHH
Q 022973 254 EKTLAILIGMIAGIALLVIFLSSIRR 279 (289)
Q Consensus 254 ~~~~~Ivv~~~~~~~~~~~~~~~~~~ 279 (289)
..++.|+||++++++++|+++.|+..
T Consensus 270 ~~~vPIaVG~~La~lvlivLiaYli~ 295 (306)
T PF01299_consen 270 SDLVPIAVGAALAGLVLIVLIAYLIG 295 (306)
T ss_pred cchHHHHHHHHHHHHHHHHHHhheeE
Confidence 45677778876665555544444333
No 21
>PTZ00046 rifin; Provisional
Probab=78.04 E-value=1 Score=42.55 Aligned_cols=14 Identities=7% Similarity=0.223 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHhhh
Q 022973 52 NSVNSMLTSLVNSA 65 (289)
Q Consensus 52 ~nl~~ll~~L~~~a 65 (289)
...++++...-...
T Consensus 55 PeMK~Vme~F~rqT 68 (358)
T PTZ00046 55 PEMKSVMENFDRQT 68 (358)
T ss_pred HHHHHHHHHHhHHH
Confidence 34555555554443
No 22
>PF11884 DUF3404: Domain of unknown function (DUF3404); InterPro: IPR021821 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 260 amino acids in length. This domain is found associated with PF02518 from PFAM, PF00512 from PFAM.
Probab=78.02 E-value=1.1 Score=40.54 Aligned_cols=11 Identities=27% Similarity=0.652 Sum_probs=8.8
Q ss_pred cCCeeEEEccC
Q 022973 225 LAKCYARYSEG 235 (289)
Q Consensus 225 ~~~C~lRYe~~ 235 (289)
+.+|++||.+-
T Consensus 210 ~~sC~~r~gNl 220 (262)
T PF11884_consen 210 GNSCFVRYGNL 220 (262)
T ss_pred CCcccceecce
Confidence 46899999963
No 23
>TIGR01477 RIFIN variant surface antigen, rifin family. This model represents the rifin branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of rifin sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 20 bits.
Probab=77.30 E-value=1.1 Score=42.18 Aligned_cols=15 Identities=7% Similarity=0.162 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHhhhc
Q 022973 52 NSVNSMLTSLVNSAM 66 (289)
Q Consensus 52 ~nl~~ll~~L~~~a~ 66 (289)
...++++...-...+
T Consensus 58 PeMK~Vm~nF~rqTs 72 (353)
T TIGR01477 58 PEMKSVMEQFDRQTS 72 (353)
T ss_pred HHHHHHHHHHhHHHH
Confidence 445556655554443
No 24
>PF15012 DUF4519: Domain of unknown function (DUF4519)
Probab=76.13 E-value=0.9 Score=31.09 Aligned_cols=25 Identities=12% Similarity=0.486 Sum_probs=18.9
Q ss_pred ceEEEEehHHHHHHHHHHHHHHHHH
Q 022973 254 EKTLAILIGMIAGIALLVIFLSSIR 278 (289)
Q Consensus 254 ~~~~~Ivv~~~~~~~~~~~~~~~~~ 278 (289)
.++.-||+|++++++++|+.+.|+.
T Consensus 28 ~kv~tVVlP~l~~~~~~Ivv~vy~k 52 (56)
T PF15012_consen 28 QKVFTVVLPTLAAVFLFIVVFVYLK 52 (56)
T ss_pred HhheeEehhHHHHHHHHHhheeEEe
Confidence 4478899999988888777666543
No 25
>PF12877 DUF3827: Domain of unknown function (DUF3827); InterPro: IPR024606 The function of the proteins in this entry is not currently known, but one of the human proteins (Q9HCM3 from SWISSPROT) has been implicated in pilocytic astrocytomas [, , ]. In the majority of cases of pilocytic astrocytomas a tandem duplication produces an in-frame fusion of the gene encoding this protein and the BRAF oncogene. The resulting fusion protein has constitutive BRAF kinase activity and is capable of transforming cells.
Probab=73.82 E-value=4 Score=41.27 Aligned_cols=26 Identities=12% Similarity=0.161 Sum_probs=18.6
Q ss_pred CcEEEEEecCCCCChhhHHHHHHHHH
Q 022973 79 QTLYGLFQCRGDLSTADCGRCVAHAV 104 (289)
Q Consensus 79 ~~vYgl~qCr~Dls~~~C~~Cl~~a~ 104 (289)
+-+|+..-=++-|+.++=..=|....
T Consensus 78 ~i~~aVr~~~~~LnGt~~S~lL~~Ls 103 (684)
T PF12877_consen 78 SITYAVRNGSGFLNGTEVSELLRQLS 103 (684)
T ss_pred EEEEEEecCceeeccHHHHHHHHhhh
Confidence 56899988888888887555554443
No 26
>PF08114 PMP1_2: ATPase proteolipid family; InterPro: IPR012589 This family consists of small proteolipids associated with the plasma membrane H+ ATPase. Two proteolipids (PMP1 and PMP2) are associated with the ATPase and both genes are similarly expressed in the wild-type strain of yeast. No modification of the level of transcription of one PMP gene is detected in a strain deleted of the other. Though both proteolipids show similarity with other small proteolipids associated with other cation -transporting ATPases, their functions remain unclear [].
Probab=73.24 E-value=5 Score=25.64 Aligned_cols=13 Identities=15% Similarity=0.146 Sum_probs=6.4
Q ss_pred HHHHHHHHHHhhc
Q 022973 271 VIFLSSIRRLCDG 283 (289)
Q Consensus 271 ~~~~~~~~~~~~~ 283 (289)
+++.+.+||+..|
T Consensus 24 iva~~iYRKw~aR 36 (43)
T PF08114_consen 24 IVALFIYRKWQAR 36 (43)
T ss_pred HHHHHHHHHHHHH
Confidence 4444445666433
No 27
>PF15345 TMEM51: Transmembrane protein 51
Probab=71.61 E-value=8.5 Score=34.13 Aligned_cols=25 Identities=32% Similarity=0.349 Sum_probs=12.3
Q ss_pred EEEEehHHHHHHHHHH--HHHHHHHHHh
Q 022973 256 TLAILIGMIAGIALLV--IFLSSIRRLC 281 (289)
Q Consensus 256 ~~~Ivv~~~~~~~~~~--~~~~~~~~~~ 281 (289)
+||.|+..+ ++++++ +|+....||+
T Consensus 59 SVAyVLVG~-Gv~LLLLSICL~IR~KRr 85 (233)
T PF15345_consen 59 SVAYVLVGS-GVALLLLSICLSIRDKRR 85 (233)
T ss_pred EEEEehhhH-HHHHHHHHHHHHHHHHHH
Confidence 567665444 333333 5555544443
No 28
>KOG3488 consensus Dolichol phosphate-mannose regulatory protein (DPM2) [Posttranslational modification, protein turnover, chaperones]
Probab=69.94 E-value=5.3 Score=28.66 Aligned_cols=26 Identities=31% Similarity=0.338 Sum_probs=16.1
Q ss_pred EEEEehHHHHHHHHHHHHHHHHHHHh
Q 022973 256 TLAILIGMIAGIALLVIFLSSIRRLC 281 (289)
Q Consensus 256 ~~~Ivv~~~~~~~~~~~~~~~~~~~~ 281 (289)
-.+|.+|+.+++.++.+.-.|+.-.+
T Consensus 47 ~yAi~iPvaagl~ll~lig~Fis~vM 72 (81)
T KOG3488|consen 47 EYAITIPVAAGLFLLCLIGTFISLVM 72 (81)
T ss_pred hHHhhhHHHHHHHHHHHHHHHHHHHh
Confidence 46788999887765544334444444
No 29
>KOG3653 consensus Transforming growth factor beta/activin receptor subfamily of serine/threonine kinases [Signal transduction mechanisms]
Probab=69.78 E-value=11 Score=37.20 Aligned_cols=13 Identities=23% Similarity=0.235 Sum_probs=8.3
Q ss_pred CCeeEEEccCCCC
Q 022973 226 AKCYARYSEGGDH 238 (289)
Q Consensus 226 ~~C~lRYe~~~f~ 238 (289)
+-|+.+|+..+-+
T Consensus 123 ~~CN~n~s~~~~~ 135 (534)
T KOG3653|consen 123 DFCNANFSHLPPP 135 (534)
T ss_pred CcccCCccccCCC
Confidence 4788888754333
No 30
>PF13268 DUF4059: Protein of unknown function (DUF4059)
Probab=66.99 E-value=8.8 Score=27.61 Aligned_cols=19 Identities=16% Similarity=-0.113 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHhhcCCCC
Q 022973 269 LLVIFLSSIRRLCDGKGKG 287 (289)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~ 287 (289)
+++++..|+-+|..|+|+|
T Consensus 20 V~~~~~~wi~~Ra~~~~DK 38 (72)
T PF13268_consen 20 VLLVSGIWILWRALRKKDK 38 (72)
T ss_pred HHHHHHHHHHHHHHHcCCC
Confidence 3445555655556566655
No 31
>TIGR01478 STEVOR variant surface antigen, stevor family. This model represents the stevor branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of stevor sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 8 bits.
Probab=65.08 E-value=6.5 Score=35.95 Aligned_cols=15 Identities=13% Similarity=0.346 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHhhh
Q 022973 51 ENSVNSMLTSLVNSA 65 (289)
Q Consensus 51 ~~nl~~ll~~L~~~a 65 (289)
+..++++++.+-..|
T Consensus 57 DpEmK~iid~~n~ea 71 (295)
T TIGR01478 57 DPELKEIIDKLNEEA 71 (295)
T ss_pred cHHHHHHHHHHhHHH
Confidence 467788888777633
No 32
>PTZ00370 STEVOR; Provisional
Probab=61.83 E-value=7.1 Score=35.77 Aligned_cols=14 Identities=0% Similarity=0.285 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHhh
Q 022973 51 ENSVNSMLTSLVNS 64 (289)
Q Consensus 51 ~~nl~~ll~~L~~~ 64 (289)
+..++++++.+-..
T Consensus 56 DpemK~i~d~~n~e 69 (296)
T PTZ00370 56 DPELKEIIDKMNEE 69 (296)
T ss_pred cHHHHHHHHHHhHH
Confidence 46788888888763
No 33
>PF15099 PIRT: Phosphoinositide-interacting protein family
Probab=60.09 E-value=4.3 Score=32.56 Aligned_cols=30 Identities=13% Similarity=0.120 Sum_probs=13.4
Q ss_pred EEEEehHHHHHHHHH--HHH-HHHHHHHhhcCC
Q 022973 256 TLAILIGMIAGIALL--VIF-LSSIRRLCDGKG 285 (289)
Q Consensus 256 ~~~Ivv~~~~~~~~~--~~~-~~~~~~~~~~~~ 285 (289)
++-|+-+++..+.++ ++. ++|.-+++||+|
T Consensus 79 i~~~~G~vlLs~GLmlL~~~alcW~~~~rkK~~ 111 (129)
T PF15099_consen 79 IISIFGPVLLSLGLMLLACSALCWKPIIRKKKK 111 (129)
T ss_pred hhhhehHHHHHHHHHHHHhhhheehhhhHhHHH
Confidence 444555555544433 333 444433333333
No 34
>PF13908 Shisa: Wnt and FGF inhibitory regulator
Probab=59.47 E-value=6.9 Score=33.14 Aligned_cols=9 Identities=33% Similarity=0.807 Sum_probs=4.0
Q ss_pred EEEehHHHH
Q 022973 257 LAILIGMIA 265 (289)
Q Consensus 257 ~~Ivv~~~~ 265 (289)
..|||+|++
T Consensus 78 ~~iivgvi~ 86 (179)
T PF13908_consen 78 TGIIVGVIC 86 (179)
T ss_pred eeeeeehhh
Confidence 344444433
No 35
>PF02009 Rifin_STEVOR: Rifin/stevor family; InterPro: IPR002858 Malaria is still a major cause of mortality in many areas of the world. Plasmodium falciparum causes the most severe human form of the disease and is responsible for most fatalities. Severe cases of malaria can occur when the parasite invades and then proliferates within red blood cell erythrocytes. The parasite produces many variant antigenic proteins, encoded by multigene families, which are present on the surface of the infected erythrocyte and play important roles in virulence. A crucial survival mechanism for the malaria parasite is its ability to evade the immune response by switching these variant surface antigens. The high virulence of P. falciparum relative to other malarial parasites is in large part due to the fact that in this organism many of these surface antigens mediate the binding of infected erythrocytes to the vascular endothelium (cytoadherence) and non-infected erythrocytes (rosetting). This can lead to the accumulation of infected cells in the vasculature of a variety of organs, blocking the blood flow and reducing the oxygen supply. Clinical symptoms of severe infection can include fever, progressive anaemia, multi-organ dysfunction and coma. For more information see []. Several multicopy gene families have been described in Plasmodium falciparum, including the stevor family of subtelomeric open reading frames and the rif interspersed repetitive elements. Both families contain three predicted transmembrane segments. It has been proposed that stevor and rif are members of a larger superfamily that code for variant surface antigens [].
Probab=55.62 E-value=7.2 Score=36.12 Aligned_cols=6 Identities=17% Similarity=-0.053 Sum_probs=2.5
Q ss_pred hcCCCC
Q 022973 282 DGKGKG 287 (289)
Q Consensus 282 ~~~~~~ 287 (289)
||+|||
T Consensus 285 KKmkKK 290 (299)
T PF02009_consen 285 KKMKKK 290 (299)
T ss_pred hhhhHH
Confidence 444443
No 36
>KOG3637 consensus Vitronectin receptor, alpha subunit [Extracellular structures]
Probab=55.47 E-value=13 Score=40.38 Aligned_cols=27 Identities=15% Similarity=0.380 Sum_probs=19.8
Q ss_pred ceEEEEehHHHHHHHHHHHHHHHHHHH
Q 022973 254 EKTLAILIGMIAGIALLVIFLSSIRRL 280 (289)
Q Consensus 254 ~~~~~Ivv~~~~~~~~~~~~~~~~~~~ 280 (289)
-.+++||++++++++||+++.+.+||.
T Consensus 976 vp~wiIi~svl~GLLlL~llv~~LwK~ 1002 (1030)
T KOG3637|consen 976 VPLWIIILSVLGGLLLLALLVLLLWKC 1002 (1030)
T ss_pred cceeeehHHHHHHHHHHHHHHHHHHhc
Confidence 347888899999888777666555654
No 37
>PLN03150 hypothetical protein; Provisional
Probab=55.03 E-value=12 Score=38.10 Aligned_cols=26 Identities=19% Similarity=0.245 Sum_probs=14.0
Q ss_pred EEEEehHHHHHHHHHHHHHHHHHHHh
Q 022973 256 TLAILIGMIAGIALLVIFLSSIRRLC 281 (289)
Q Consensus 256 ~~~Ivv~~~~~~~~~~~~~~~~~~~~ 281 (289)
++.|++++++++++++++..++||++
T Consensus 546 ~i~~~~~~~~~~l~~~~~~~~~~~~r 571 (623)
T PLN03150 546 KIGIAFGVSVAFLFLVICAMCWWKRR 571 (623)
T ss_pred EEEEEhHHHHHHHHHHHHHhhheeeh
Confidence 56667777665544444444444433
No 38
>PF07297 DPM2: Dolichol phosphate-mannose biosynthesis regulatory protein (DPM2); InterPro: IPR009914 This family consists of several eukaryotic dolichol phosphate-mannose biosynthesis regulatory (DPM2) proteins. Biosynthesis of glycosylphosphatidylinositol and N-glycan precursor is dependent upon a mannosyl donor, dolichol phosphate-mannose (DPM). DPM2, an 84 amino acid membrane protein expressed in the endoplasmic reticulum (ER), makes a complex with DPM1 that is essential for the ER localisation and stable expression of DPM1. Moreover, DPM2 enhances binding of dolichol phosphate, a substrate of DPM synthase. Biosynthesis of DPM in mammalian cells is regulated by DPM2 [].; GO: 0009059 macromolecule biosynthetic process, 0030176 integral to endoplasmic reticulum membrane
Probab=51.35 E-value=14 Score=27.15 Aligned_cols=15 Identities=20% Similarity=0.211 Sum_probs=10.0
Q ss_pred EEEEehHHHHHHHHH
Q 022973 256 TLAILIGMIAGIALL 270 (289)
Q Consensus 256 ~~~Ivv~~~~~~~~~ 270 (289)
-.||.+|++..++.+
T Consensus 45 ~yAi~lP~~lll~~~ 59 (78)
T PF07297_consen 45 EYAIILPIFLLLLGL 59 (78)
T ss_pred HHHHHHHHHHHHHHH
Confidence 467888887665544
No 39
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=51.23 E-value=27 Score=32.04 Aligned_cols=19 Identities=16% Similarity=0.242 Sum_probs=10.2
Q ss_pred cceEEEEehHHHHHHHHHH
Q 022973 253 IEKTLAILIGMIAGIALLV 271 (289)
Q Consensus 253 ~~~~~~Ivv~~~~~~~~~~ 271 (289)
.+.+|.|-+.+++++++++
T Consensus 226 ~G~VVlIslAiALG~v~ll 244 (281)
T PF12768_consen 226 RGFVVLISLAIALGTVFLL 244 (281)
T ss_pred ceEEEEEehHHHHHHHHHH
Confidence 3445555566666655444
No 40
>PF06697 DUF1191: Protein of unknown function (DUF1191); InterPro: IPR010605 This family contains hypothetical plant proteins of unknown function.
Probab=50.38 E-value=9 Score=35.03 Aligned_cols=13 Identities=23% Similarity=0.665 Sum_probs=6.0
Q ss_pred EEEEehHHHHHHH
Q 022973 256 TLAILIGMIAGIA 268 (289)
Q Consensus 256 ~~~Ivv~~~~~~~ 268 (289)
.+.||++++++++
T Consensus 212 ~W~iv~g~~~G~~ 224 (278)
T PF06697_consen 212 WWKIVVGVVGGVV 224 (278)
T ss_pred eEEEEEEehHHHH
Confidence 4445555444433
No 41
>PF02480 Herpes_gE: Alphaherpesvirus glycoprotein E; InterPro: IPR003404 Glycoprotein E (gE) of Alphaherpesvirus forms a complex with glycoprotein I (gI), functioning as an immunoglobulin G (IgG) Fc binding protein. gE is involved in virus spread but is not essential for propagation [].; GO: 0016020 membrane; PDB: 2GJ7_F 2GIY_B.
Probab=48.83 E-value=5.7 Score=38.78 Aligned_cols=14 Identities=21% Similarity=0.351 Sum_probs=9.2
Q ss_pred EEEEcCCCCChhhH
Q 022973 187 GVAQCVGDLSASEC 200 (289)
Q Consensus 187 glaQC~~DLs~~~C 200 (289)
-...|.++-.+.+|
T Consensus 237 ~y~~C~~~~~~~~C 250 (439)
T PF02480_consen 237 RYANCSPSGWPRRC 250 (439)
T ss_dssp EEEEEBTTC-TTTT
T ss_pred hhcCCCCCCCcCCC
Confidence 35679888766666
No 42
>PRK01844 hypothetical protein; Provisional
Probab=47.20 E-value=11 Score=27.32 Aligned_cols=23 Identities=26% Similarity=0.350 Sum_probs=10.5
Q ss_pred EehHHHHHHHHHHHHHHHHHHHh
Q 022973 259 ILIGMIAGIALLVIFLSSIRRLC 281 (289)
Q Consensus 259 Ivv~~~~~~~~~~~~~~~~~~~~ 281 (289)
|++++++.++-++.++++-||..
T Consensus 7 I~l~I~~li~G~~~Gff~ark~~ 29 (72)
T PRK01844 7 ILVGVVALVAGVALGFFIARKYM 29 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555443333344444445444
No 43
>PF12877 DUF3827: Domain of unknown function (DUF3827); InterPro: IPR024606 The function of the proteins in this entry is not currently known, but one of the human proteins (Q9HCM3 from SWISSPROT) has been implicated in pilocytic astrocytomas [, , ]. In the majority of cases of pilocytic astrocytomas a tandem duplication produces an in-frame fusion of the gene encoding this protein and the BRAF oncogene. The resulting fusion protein has constitutive BRAF kinase activity and is capable of transforming cells.
Probab=45.25 E-value=21 Score=36.29 Aligned_cols=22 Identities=18% Similarity=-0.115 Sum_probs=13.4
Q ss_pred EEEEEcCCCCChhhHHHHHHHH
Q 022973 186 TGVAQCVGDLSASECQDCLSDA 207 (289)
Q Consensus 186 YglaQC~~DLs~~~C~~CL~~a 207 (289)
|...+=-.-|.+.++..=|+..
T Consensus 212 yV~~~~G~pl~a~~AA~~Ln~l 233 (684)
T PF12877_consen 212 YVEGQNGKPLPAVTAAKDLNLL 233 (684)
T ss_pred EEEcCCCcCCcHHHHHHHHhcc
Confidence 3333666677777777666544
No 44
>PF05454 DAG1: Dystroglycan (Dystrophin-associated glycoprotein 1); InterPro: IPR008465 Dystroglycan is one of the dystrophin-associated glycoproteins, which is encoded by a 5.5 kb transcript in Homo sapiens. The protein product is cleaved into two non-covalently associated subunits, [alpha] (N-terminal) and [beta] (C-terminal). In skeletal muscle the dystroglycan complex works as a transmembrane linkage between the extracellular matrix and the cytoskeleton [alpha]-dystroglycan is extracellular and binds to merosin ([alpha]-2 laminin) in the basement membrane, while [beta]-dystroglycan is a transmembrane protein and binds to dystrophin, which is a large rod-like cytoskeletal protein, absent in Duchenne muscular dystrophy patients. Dystrophin binds to intracellular actin cables. In this way, the dystroglycan complex, which links the extracellular matrix to the intracellular actin cables, is thought to provide structural integrity in muscle tissues. The dystroglycan complex is also known to serve as an agrin receptor in muscle, where it may regulate agrin-induced acetylcholine receptor clustering at the neuromuscular junction. There is also evidence which suggests the function of dystroglycan as a part of the signal transduction pathway because it is shown that Grb2, a mediator of the Ras-related signal pathway, can interact with the cytoplasmic domain of dystroglycan. In general, aberrant expression of dystrophin-associated protein complex underlies the pathogenesis of Duchenne muscular dystrophy, Becker muscular dystrophy and severe childhood autosomal recessive muscular dystrophy. Interestingly, no genetic disease has been described for either [alpha]- or [beta]-dystroglycan. Dystroglycan is widely distributed in non-muscle tissues as well as in muscle tissues. During epithelial morphogenesis of kidney, the dystroglycan complex is shown to act as a receptor for the basement membrane. Dystroglycan expression in Mus musculus brain and neural retina has also been reported. However, the physiological role of dystroglycan in non-muscle tissues has remained unclear [].; PDB: 1EG4_P.
Probab=44.33 E-value=7.4 Score=35.85 Aligned_cols=11 Identities=18% Similarity=0.150 Sum_probs=0.0
Q ss_pred HHHHHHHHHHH
Q 022973 267 IALLVIFLSSI 277 (289)
Q Consensus 267 ~~~~~~~~~~~ 277 (289)
++.+|++++|.
T Consensus 161 IA~iIa~icyr 171 (290)
T PF05454_consen 161 IAGIIACICYR 171 (290)
T ss_dssp -----------
T ss_pred HHHHHHHHhhh
Confidence 33334444443
No 45
>KOG1226 consensus Integrin beta subunit (N-terminal portion of extracellular region) [Signal transduction mechanisms; Extracellular structures]
Probab=44.04 E-value=29 Score=36.00 Aligned_cols=29 Identities=38% Similarity=0.529 Sum_probs=22.8
Q ss_pred cceEEEEehHHHHHHHHHHHHHHHHHHHh
Q 022973 253 IEKTLAILIGMIAGIALLVIFLSSIRRLC 281 (289)
Q Consensus 253 ~~~~~~Ivv~~~~~~~~~~~~~~~~~~~~ 281 (289)
...+++|+++++++++++.+++..+||..
T Consensus 710 ~~~~~~i~lgvv~~ivligl~llliwkll 738 (783)
T KOG1226|consen 710 GPNILAIVLGVVAGIVLIGLALLLIWKLL 738 (783)
T ss_pred CCcEeeehHHHHHHHHHHHHHHHHHHHHh
Confidence 34589999999998887777777778764
No 46
>PF05808 Podoplanin: Podoplanin; InterPro: IPR008783 This family consists of several mammalian podoplanin-like proteins which are thought to control specifically the unique shape of podocytes [].; GO: 0016021 integral to membrane; PDB: 3IET_X.
Probab=43.84 E-value=7.6 Score=32.52 Aligned_cols=27 Identities=15% Similarity=0.404 Sum_probs=0.0
Q ss_pred cceEEEEehHHHHHHHHHHH-HHHHHHH
Q 022973 253 IEKTLAILIGMIAGIALLVI-FLSSIRR 279 (289)
Q Consensus 253 ~~~~~~Ivv~~~~~~~~~~~-~~~~~~~ 279 (289)
...++-||||+++++.++.- +++++||
T Consensus 128 T~tLVGIIVGVLlaIG~igGIIivvvRK 155 (162)
T PF05808_consen 128 TVTLVGIIVGVLLAIGFIGGIIIVVVRK 155 (162)
T ss_dssp ----------------------------
T ss_pred eeeeeeehhhHHHHHHHHhheeeEEeeh
Confidence 34468888998888877663 3334444
No 47
>PHA02650 hypothetical protein; Provisional
Probab=43.00 E-value=23 Score=25.98 Aligned_cols=19 Identities=16% Similarity=0.088 Sum_probs=9.6
Q ss_pred HHHHHHHHHHhhcCCCCCC
Q 022973 271 VIFLSSIRRLCDGKGKGGK 289 (289)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~ 289 (289)
++.++++.|..+|--++.|
T Consensus 63 ~l~~flYLK~~~r~~~~~~ 81 (81)
T PHA02650 63 ALFSFFVFKGYTRNLNGRK 81 (81)
T ss_pred HHHHHHHHHHhccccCCCC
Confidence 3334445566666555543
No 48
>PF14914 LRRC37AB_C: LRRC37A/B like protein 1 C-terminal domain
Probab=42.88 E-value=16 Score=30.13 Aligned_cols=25 Identities=24% Similarity=0.329 Sum_probs=12.2
Q ss_pred eEEEEehHHHHHHHHHHHHHHHHHH
Q 022973 255 KTLAILIGMIAGIALLVIFLSSIRR 279 (289)
Q Consensus 255 ~~~~Ivv~~~~~~~~~~~~~~~~~~ 279 (289)
.+++|-|.+++-++++++|+..++.
T Consensus 121 lilaisvtvv~~iliii~CLiei~s 145 (154)
T PF14914_consen 121 LILAISVTVVVMILIIIFCLIEICS 145 (154)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3555555554434444455554443
No 49
>TIGR02976 phageshock_pspB phage shock protein B. This model describes the PspB protein of the psp (phage shock protein) operon, as found in Escherichia coli and many related species. Expression of a phage protein called secretin protein IV, and a number of other stresses including ethanol, heat shock, and defects in protein secretion trigger sigma-54-dependent expression of the phage shock regulon. PspB is both a regulator and an effector protein of the phage shock response.
Probab=42.67 E-value=30 Score=25.26 Aligned_cols=10 Identities=20% Similarity=0.238 Sum_probs=4.9
Q ss_pred EehHHHHHHH
Q 022973 259 ILIGMIAGIA 268 (289)
Q Consensus 259 Ivv~~~~~~~ 268 (289)
+++|+++.++
T Consensus 6 l~~Pliif~i 15 (75)
T TIGR02976 6 LAIPLIIFVI 15 (75)
T ss_pred HHHHHHHHHH
Confidence 4556554433
No 50
>PF15176 LRR19-TM: Leucine-rich repeat family 19 TM domain
Probab=42.26 E-value=25 Score=27.14 Aligned_cols=17 Identities=12% Similarity=0.391 Sum_probs=12.1
Q ss_pred ceEEEEehHHHHHHHHH
Q 022973 254 EKTLAILIGMIAGIALL 270 (289)
Q Consensus 254 ~~~~~Ivv~~~~~~~~~ 270 (289)
++.++.+||||++++++
T Consensus 14 g~sW~~LVGVv~~al~~ 30 (102)
T PF15176_consen 14 GRSWPFLVGVVVTALVT 30 (102)
T ss_pred CcccHhHHHHHHHHHHH
Confidence 66788888887765543
No 51
>PF04478 Mid2: Mid2 like cell wall stress sensor; InterPro: IPR007567 This family represents a region near the C terminus of Mid2, which contains a transmembrane region. The remainder of the protein sequence is serine-rich and of low complexity, and is therefore impossible to align accurately. Mid2 is thought to act as a mechanosensor of cell wall stress. The C-terminal cytoplasmic region of Mid2 is known to interact with Rom2, a guanine nucleotide exchange factor (GEF) for Rho1, which is part of the cell wall integrity signalling pathway [].
Probab=42.06 E-value=7.4 Score=32.32 Aligned_cols=28 Identities=18% Similarity=0.338 Sum_probs=15.4
Q ss_pred ceEEEEehHHHHHHHHHH-HHHHHHHHHh
Q 022973 254 EKTLAILIGMIAGIALLV-IFLSSIRRLC 281 (289)
Q Consensus 254 ~~~~~Ivv~~~~~~~~~~-~~~~~~~~~~ 281 (289)
.+.-.||||+++++.+.+ +++..+....
T Consensus 45 ~knknIVIGvVVGVGg~ill~il~lvf~~ 73 (154)
T PF04478_consen 45 SKNKNIVIGVVVGVGGPILLGILALVFIF 73 (154)
T ss_pred cCCccEEEEEEecccHHHHHHHHHhheeE
Confidence 334567777777764443 4445555543
No 52
>PF06697 DUF1191: Protein of unknown function (DUF1191); InterPro: IPR010605 This family contains hypothetical plant proteins of unknown function.
Probab=40.43 E-value=36 Score=31.15 Aligned_cols=22 Identities=14% Similarity=-0.008 Sum_probs=13.1
Q ss_pred CCCCCcceE-EEEehHHHHHHHH
Q 022973 248 DNDEEIEKT-LAILIGMIAGIAL 269 (289)
Q Consensus 248 ~~~~~~~~~-~~Ivv~~~~~~~~ 269 (289)
+++.+.+++ +.+++|+++.+++
T Consensus 207 ~~~~~~W~iv~g~~~G~~~L~ll 229 (278)
T PF06697_consen 207 RKRSWWWKIVVGVVGGVVLLGLL 229 (278)
T ss_pred CCcceeEEEEEEehHHHHHHHHH
Confidence 344567885 5567777654444
No 53
>PF09835 DUF2062: Uncharacterized protein conserved in bacteria (DUF2062); InterPro: IPR018639 This domain, found in various prokaryotic proteins, has no known function. It is found at the C-terminal of family 2 glycosyltransferase proteins, in addition to proteins of unknown function.
Probab=39.99 E-value=20 Score=29.42 Aligned_cols=11 Identities=18% Similarity=0.356 Sum_probs=4.5
Q ss_pred HHHHhhcCCCC
Q 022973 277 IRRLCDGKGKG 287 (289)
Q Consensus 277 ~~~~~~~~~~~ 287 (289)
+++.+||++||
T Consensus 143 ~~~~r~~r~~~ 153 (154)
T PF09835_consen 143 VRKYRKRRRKR 153 (154)
T ss_pred HHHHHHHHHhC
Confidence 44444444433
No 54
>PF13908 Shisa: Wnt and FGF inhibitory regulator
Probab=39.98 E-value=17 Score=30.67 Aligned_cols=20 Identities=25% Similarity=0.398 Sum_probs=11.6
Q ss_pred CcceEEEEehHHHHHHHHHH
Q 022973 252 EIEKTLAILIGMIAGIALLV 271 (289)
Q Consensus 252 ~~~~~~~Ivv~~~~~~~~~~ 271 (289)
....++.||++|++.+++++
T Consensus 77 ~~~iivgvi~~Vi~Iv~~Iv 96 (179)
T PF13908_consen 77 ITGIIVGVICGVIAIVVLIV 96 (179)
T ss_pred eeeeeeehhhHHHHHHHhHh
Confidence 44567777777665444333
No 55
>PF06667 PspB: Phage shock protein B; InterPro: IPR009554 This family consists of several bacterial phage shock protein B (PspB) sequences. The phage shock protein (psp) operon is induced in response to heat, ethanol, osmotic shock and infection by filamentous bacteriophages []. Expression of the operon requires the alternative sigma factor sigma54 and the transcriptional activator PspF. In addition, PspA plays a negative regulatory role, and the integral-membrane proteins PspB and PspC play a positive one [].; GO: 0006355 regulation of transcription, DNA-dependent, 0009271 phage shock
Probab=38.82 E-value=40 Score=24.61 Aligned_cols=10 Identities=10% Similarity=0.325 Sum_probs=4.3
Q ss_pred EehHHHHHHH
Q 022973 259 ILIGMIAGIA 268 (289)
Q Consensus 259 Ivv~~~~~~~ 268 (289)
|++|+++.++
T Consensus 6 l~~plivf~i 15 (75)
T PF06667_consen 6 LFVPLIVFMI 15 (75)
T ss_pred HHHHHHHHHH
Confidence 3445444333
No 56
>PRK00523 hypothetical protein; Provisional
Probab=38.14 E-value=18 Score=26.17 Aligned_cols=24 Identities=17% Similarity=0.051 Sum_probs=9.7
Q ss_pred EEehHHHHHHHHHHHHHHHHHHHh
Q 022973 258 AILIGMIAGIALLVIFLSSIRRLC 281 (289)
Q Consensus 258 ~Ivv~~~~~~~~~~~~~~~~~~~~ 281 (289)
+|++.+++.++-++.++++-||..
T Consensus 7 ~I~l~i~~li~G~~~Gffiark~~ 30 (72)
T PRK00523 7 ALGLGIPLLIVGGIIGYFVSKKMF 30 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444433333334444444443
No 57
>PF13955 Fst_toxin: Toxin Fst, type I toxin-antitoxin system; PDB: 2KV5_A.
Probab=38.12 E-value=20 Score=19.53 Aligned_cols=13 Identities=23% Similarity=0.626 Sum_probs=8.0
Q ss_pred EehHHHHHHHHHH
Q 022973 259 ILIGMIAGIALLV 271 (289)
Q Consensus 259 Ivv~~~~~~~~~~ 271 (289)
||.|+++++++.+
T Consensus 4 iIaPi~VGvvl~l 16 (21)
T PF13955_consen 4 IIAPIVVGVVLTL 16 (21)
T ss_dssp HHHHHHHHHHHHH
T ss_pred ehhhHHHHHHHHH
Confidence 5667777666443
No 58
>PTZ00045 apical membrane antigen 1; Provisional
Probab=37.01 E-value=37 Score=34.20 Aligned_cols=15 Identities=20% Similarity=0.235 Sum_probs=9.8
Q ss_pred hhHHHHHHHHHHHHh
Q 022973 94 ADCGRCVAHAVSQLG 108 (289)
Q Consensus 94 ~~C~~Cl~~a~~~~~ 108 (289)
.|+..|-..|...++
T Consensus 207 ~dla~Ca~~a~~~vp 221 (595)
T PTZ00045 207 NDLALCAEYASNFVP 221 (595)
T ss_pred hhHHHHHHHHHhcCc
Confidence 566677777666655
No 59
>PF00558 Vpu: Vpu protein; InterPro: IPR008187 The Human immunodeficiency virus 1 (HIV-1) Vpu protein acts in the degradation of CD4 in the endoplasmic reticulum and in the enhancement of virion release from the plasma membrane of infected cells [].; GO: 0019076 release of virus from host; PDB: 2JPX_A 1PI8_A 2GOH_A 2GOF_A 1PI7_A 1PJE_A 1VPU_A 2K7Y_A.
Probab=36.76 E-value=8.5 Score=28.51 Aligned_cols=6 Identities=33% Similarity=0.434 Sum_probs=2.0
Q ss_pred hHHHHH
Q 022973 261 IGMIAG 266 (289)
Q Consensus 261 v~~~~~ 266 (289)
+++++.
T Consensus 7 ~~iial 12 (81)
T PF00558_consen 7 LAIIAL 12 (81)
T ss_dssp -HHHHH
T ss_pred HHHHHH
Confidence 444333
No 60
>PF12191 stn_TNFRSF12A: Tumour necrosis factor receptor stn_TNFRSF12A_TNFR domain; InterPro: IPR022316 The tumour necrosis factor (TNF) receptor (TNFR) superfamily comprises more than 20 type-I transmembrane proteins. Family members are defined based on similarity in their extracellular domain - a region that contains many cysteine residues arranged in a specific repetitive pattern []. The cysteines allow formation of an extended rod-like structure, responsible for ligand binding []. Upon receptor activation, different intracellular signalling complexes are assembled for different members of the TNFR superfamily, depending on their intracellular domains and sequences []. Activation of TNFRs can therefore induce a range of disparate effects, including cell proliferation, differentiation, survival, or apoptotic cell death, depending upon the receptor involved []. TNFRs are widely distributed and play important roles in many crucial biological processes, such as lymphoid and neuronal development, innate and adaptive immunity, and maintenance of cellular homeostasis []. Drugs that manipulate their signalling have potential roles in the prevention and treatment of many diseases, such as viral infections, coronary heart disease, transplant rejection, and immune disease []. TNF receptor 12 (also known as TWEAK receptor, and fibroblast growth factor-inducible-14 (Fn14)) has been implicated in endothelial cell growth and migration []. The receptor may also play a role in cell-matrix interactions [].; PDB: 2KN0_A 2RPJ_A 2KMZ_A 2EQP_A.
Probab=36.15 E-value=8.4 Score=30.90 Aligned_cols=7 Identities=29% Similarity=0.658 Sum_probs=0.0
Q ss_pred HHHhhcC
Q 022973 278 RRLCDGK 284 (289)
Q Consensus 278 ~~~~~~~ 284 (289)
||+.+|+
T Consensus 101 ~rrcrrr 107 (129)
T PF12191_consen 101 WRRCRRR 107 (129)
T ss_dssp -------
T ss_pred Hhhhhcc
Confidence 3333333
No 61
>PF01708 Gemini_mov: Geminivirus putative movement protein ; InterPro: IPR002621 This family consists of putative movement proteins from Maize streak virus and Wheat dwarf virus [].; GO: 0046740 spread of virus in host, cell to cell, 0016021 integral to membrane
Probab=35.87 E-value=1.5e+02 Score=22.44 Aligned_cols=25 Identities=8% Similarity=0.150 Sum_probs=12.8
Q ss_pred cceEEEEehHHHHHHHHHHHHHHHH
Q 022973 253 IEKTLAILIGMIAGIALLVIFLSSI 277 (289)
Q Consensus 253 ~~~~~~Ivv~~~~~~~~~~~~~~~~ 277 (289)
-++++.|+|.+++++.++-+.+.|+
T Consensus 34 ws~vv~v~i~~lvaVg~~YL~y~~f 58 (91)
T PF01708_consen 34 WSRVVEVAIFTLVAVGCLYLAYTWF 58 (91)
T ss_pred ceeEeeeeehHHHHHHHHHHHHHHH
Confidence 4555556555655555444444443
No 62
>PF07213 DAP10: DAP10 membrane protein; InterPro: IPR009861 This family consists of several mammalian DAP10 membrane proteins. In activated mouse natural killer (NK) cells, the NKG2D receptor associates with two intracellular adaptors, DAP10 and DAP12, which trigger phosphatidyl inositol 3 kinase (PI3K) and Syk family protein tyrosine kinases, respectively. It has been suggested that the DAP10-PI3K pathway is sufficient to initiate NKG2D-mediated killing of target cells [].
Probab=35.52 E-value=29 Score=25.58 Aligned_cols=12 Identities=8% Similarity=-0.075 Sum_probs=5.1
Q ss_pred HHHHhhcCCCCC
Q 022973 277 IRRLCDGKGKGG 288 (289)
Q Consensus 277 ~~~~~~~~~~~~ 288 (289)
-|.++|++++.+
T Consensus 58 ar~r~r~~~~~~ 69 (79)
T PF07213_consen 58 ARPRRRPTQEDD 69 (79)
T ss_pred cccccCCcccCC
Confidence 334444444444
No 63
>PF05568 ASFV_J13L: African swine fever virus J13L protein; InterPro: IPR008385 This family consists of several African swine fever virus (ASFV) j13L proteins [, , ].
Probab=35.41 E-value=35 Score=28.16 Aligned_cols=14 Identities=14% Similarity=0.415 Sum_probs=6.0
Q ss_pred EEehHHHHHHHHHH
Q 022973 258 AILIGMIAGIALLV 271 (289)
Q Consensus 258 ~Ivv~~~~~~~~~~ 271 (289)
.-+.-|++++++++
T Consensus 29 thm~tILiaIvVli 42 (189)
T PF05568_consen 29 THMYTILIAIVVLI 42 (189)
T ss_pred HHHHHHHHHHHHHH
Confidence 33444444444443
No 64
>PTZ00087 thrombosponding-related protein; Provisional
Probab=35.34 E-value=46 Score=30.38 Aligned_cols=23 Identities=26% Similarity=0.326 Sum_probs=16.0
Q ss_pred CcceEEEEehHHHHHHHHHHHHH
Q 022973 252 EIEKTLAILIGMIAGIALLVIFL 274 (289)
Q Consensus 252 ~~~~~~~Ivv~~~~~~~~~~~~~ 274 (289)
++-+++.|++||++.+.++++.+
T Consensus 294 st~~i~~i~~piv~vi~v~~ily 316 (340)
T PTZ00087 294 STFKILIILLPIVLIICVMGILY 316 (340)
T ss_pred CcceEeeeehhHHHHHHHHHHHH
Confidence 44568888999987766555544
No 65
>PF03302 VSP: Giardia variant-specific surface protein; InterPro: IPR005127 During infection, the intestinal protozoan parasite Giardia lamblia virus undergoes continuous antigenic variation which is determined by diversification of the parasite's major surface antigen, named VSP (variant surface protein).
Probab=34.76 E-value=31 Score=33.25 Aligned_cols=15 Identities=7% Similarity=0.182 Sum_probs=7.6
Q ss_pred ceEEEEehHHHHHHH
Q 022973 254 EKTLAILIGMIAGIA 268 (289)
Q Consensus 254 ~~~~~Ivv~~~~~~~ 268 (289)
+-|.-|.|.+|++|.
T Consensus 367 gaIaGIsvavvvvVg 381 (397)
T PF03302_consen 367 GAIAGISVAVVVVVG 381 (397)
T ss_pred cceeeeeehhHHHHH
Confidence 335556665544433
No 66
>TIGR01477 RIFIN variant surface antigen, rifin family. This model represents the rifin branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of rifin sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 20 bits.
Probab=34.41 E-value=21 Score=33.78 Aligned_cols=26 Identities=23% Similarity=0.330 Sum_probs=12.1
Q ss_pred CChhhHHHHHHHHHHHHhhhCCCCce
Q 022973 91 LSTADCGRCVAHAVSQLGTLCLDSCG 116 (289)
Q Consensus 91 ls~~~C~~Cl~~a~~~~~~~C~~~~~ 116 (289)
++.--|.-=|++=+..-==.|...-|
T Consensus 126 IPTCvCEKSlADKvEK~CLkCg~~LG 151 (353)
T TIGR01477 126 IPTCVCEKSLADKVEKGCLRCGCGLG 151 (353)
T ss_pred CccccccchHHHHHHHhHHhcCCccC
Confidence 34444555555544433334555555
No 67
>PTZ00046 rifin; Provisional
Probab=34.19 E-value=21 Score=33.81 Aligned_cols=26 Identities=23% Similarity=0.330 Sum_probs=11.0
Q ss_pred CChhhHHHHHHHHHHHHhhhCCCCce
Q 022973 91 LSTADCGRCVAHAVSQLGTLCLDSCG 116 (289)
Q Consensus 91 ls~~~C~~Cl~~a~~~~~~~C~~~~~ 116 (289)
++.--|.-=|++=+..-==.|...-|
T Consensus 123 IPTCVCEKSlADKvEK~CLkCG~~LG 148 (358)
T PTZ00046 123 IPTCVCEKSLADKVEKGCLRCGCGLG 148 (358)
T ss_pred CccccccchHHHHHHHHHHhcCCccc
Confidence 33334555444444333223554433
No 68
>COG3197 FixS Uncharacterized protein, possibly involved in nitrogen fixation [Inorganic ion transport and metabolism]
Probab=33.67 E-value=61 Score=22.38 Aligned_cols=16 Identities=25% Similarity=0.144 Sum_probs=9.7
Q ss_pred EEEEehHHHHHHHHHH
Q 022973 256 TLAILIGMIAGIALLV 271 (289)
Q Consensus 256 ~~~Ivv~~~~~~~~~~ 271 (289)
++.|++|+.+.+++++
T Consensus 3 ~l~~Lipvsi~l~~v~ 18 (58)
T COG3197 3 ILYILIPVSILLGAVG 18 (58)
T ss_pred eeeeHHHHHHHHHHHH
Confidence 5677888765444333
No 69
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=33.57 E-value=29 Score=27.79 Aligned_cols=29 Identities=24% Similarity=0.197 Sum_probs=14.5
Q ss_pred ehHHHHHHHHHH-HHHHHHHHHhhcCCCCC
Q 022973 260 LIGMIAGIALLV-IFLSSIRRLCDGKGKGG 288 (289)
Q Consensus 260 vv~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 288 (289)
|++|+++++.-+ ..+.++....+|.+||-
T Consensus 66 i~~Ii~gv~aGvIg~Illi~y~irR~~Kk~ 95 (122)
T PF01102_consen 66 IIGIIFGVMAGVIGIILLISYCIRRLRKKS 95 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHS---
T ss_pred eeehhHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 445555544443 44456666667777763
No 70
>PF06365 CD34_antigen: CD34/Podocalyxin family; InterPro: IPR013836 This family consists of several mammalian CD34 antigen proteins. The CD34 antigen is a human leukocyte membrane protein expressed specifically by lymphohematopoietic progenitor cells. CD34 is a phosphoprotein. Activation of protein kinase C (PKC) has been found to enhance CD34 phosphorylation [, ]. This family contains several eukaryotic podocalyxin proteins. Podocalyxin is a major membrane protein of the glomerular epithelium and is thought to be involved in maintenance of the architecture of the foot processes and filtration slits characteristic of this unique epithelium by virtue of its high negative charge. Podocalyxin functions as an anti-adhesin that maintains an open filtration pathway between neighbouring foot processes in the glomerular epithelium by charge repulsion [].
Probab=33.53 E-value=69 Score=27.94 Aligned_cols=6 Identities=0% Similarity=-0.180 Sum_probs=2.9
Q ss_pred HHHHHh
Q 022973 276 SIRRLC 281 (289)
Q Consensus 276 ~~~~~~ 281 (289)
++++|+
T Consensus 123 ~~~~Rr 128 (202)
T PF06365_consen 123 CCHQRR 128 (202)
T ss_pred Hhhhhc
Confidence 455544
No 71
>PF02430 AMA-1: Apical membrane antigen 1; InterPro: IPR003298 A novel antigen of Plasmodium falciparum has been cloned that contains a hydrophobic domain typical of an integral membrane protein. The antigen is designated apical membrane antigen 1 (AMA-1) by virtue of appearing to be located in the apical complex []. AMA-1 appears to be transported to the merozoite surface close to the time of schizont rupture. The 66kDa merozoite surface antigen (PK66) of Plasmodium knowlesi, a simian malaria, possesses vaccine-related properties believed to originate from a receptor-like role in parasite invasion of erythrocytes []. The sequence of PK66 is conserved throughout plasmodium, and shows high similarity to P. falciparum AMA-1. Following schizont rupture, the distribution of PK66 changes in a coordinate manner associated with merozoite invasion. Prior to rupture, the protein is concentrated at the apical end, following which it distributes itself entirely across the surface of the free merozoite. Immunofluorescence studies suggest that, during invasion, PK66 is excluded from the erythrocyte at, and behind, the invasion interface []. ; GO: 0009405 pathogenesis, 0016020 membrane; PDB: 2Y8R_D 2X2Z_A 2Y8T_A 2Y8S_D 1HN6_A 2Z8V_B 2Z8W_A 1Z40_E 2Q8B_A 2Q8A_A ....
Probab=32.87 E-value=14 Score=35.88 Aligned_cols=23 Identities=22% Similarity=0.417 Sum_probs=0.0
Q ss_pred EEEehHHHHHHHHHHHHHHHHHH
Q 022973 257 LAILIGMIAGIALLVIFLSSIRR 279 (289)
Q Consensus 257 ~~Ivv~~~~~~~~~~~~~~~~~~ 279 (289)
++|++.+.++++|+.+.+.|++|
T Consensus 430 ~~~~~~~~~~~~~~~l~~~~~~k 452 (471)
T PF02430_consen 430 IVIIISIATGAVLLALAIYWYYK 452 (471)
T ss_dssp -----------------------
T ss_pred eehhhHHHHHHHHHHHHHHHHHh
Confidence 44444444444444444444444
No 72
>PF08374 Protocadherin: Protocadherin; InterPro: IPR013585 The structure of protocadherins is similar to that of classic cadherins (IPR002126 from INTERPRO), but they also have some unique features associated with the cytoplasmic domains. They are expressed in a variety of organisms and are found in high concentrations in the brain where they seem to be localised mainly at cell-cell contact sites. Their expression seems to be developmentally regulated [].
Probab=32.85 E-value=28 Score=30.61 Aligned_cols=26 Identities=19% Similarity=0.410 Sum_probs=16.8
Q ss_pred EEEEehHHHHHHHHHHHHHHHHHHHh
Q 022973 256 TLAILIGMIAGIALLVIFLSSIRRLC 281 (289)
Q Consensus 256 ~~~Ivv~~~~~~~~~~~~~~~~~~~~ 281 (289)
-+.|+++||++++.+|+.++...-.+
T Consensus 36 ~~~I~iaiVAG~~tVILVI~i~v~vR 61 (221)
T PF08374_consen 36 YVKIMIAIVAGIMTVILVIFIVVLVR 61 (221)
T ss_pred ceeeeeeeecchhhhHHHHHHHHHHH
Confidence 46777777777776666665554444
No 73
>PTZ00382 Variant-specific surface protein (VSP); Provisional
Probab=32.24 E-value=22 Score=27.13 Aligned_cols=6 Identities=33% Similarity=1.459 Sum_probs=3.4
Q ss_pred hhHHHH
Q 022973 198 SECQDC 203 (289)
Q Consensus 198 ~~C~~C 203 (289)
+.|..|
T Consensus 28 ~~C~~C 33 (96)
T PTZ00382 28 GNCKSC 33 (96)
T ss_pred CCCcCC
Confidence 356666
No 74
>COG1862 YajC Preprotein translocase subunit YajC [Intracellular trafficking and secretion]
Probab=32.04 E-value=13 Score=28.60 Aligned_cols=10 Identities=40% Similarity=0.341 Sum_probs=4.2
Q ss_pred HHHHHHHHHH
Q 022973 271 VIFLSSIRRL 280 (289)
Q Consensus 271 ~~~~~~~~~~ 280 (289)
++++++++|.
T Consensus 20 ~ifyFli~RP 29 (97)
T COG1862 20 AIFYFLIIRP 29 (97)
T ss_pred HHHHHhhcCH
Confidence 3444434444
No 75
>PRK15471 chain length determinant protein WzzB; Provisional
Probab=31.78 E-value=44 Score=31.34 Aligned_cols=23 Identities=9% Similarity=0.199 Sum_probs=12.0
Q ss_pred CCCCCCCcceEEEEehHHHHHHH
Q 022973 246 DDDNDEEIEKTLAILIGMIAGIA 268 (289)
Q Consensus 246 ~~~~~~~~~~~~~Ivv~~~~~~~ 268 (289)
.|-+.++.++.+.+|++++++++
T Consensus 285 ~Pv~~d~Pkr~lIlil~~~lG~~ 307 (325)
T PRK15471 285 LPVRRDSPKKAITLVLAVLLGGM 307 (325)
T ss_pred CCCCCCCCcchhHHHHHHHHHHH
Confidence 34444555565555555555443
No 76
>COG3763 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=31.59 E-value=20 Score=25.71 Aligned_cols=11 Identities=9% Similarity=-0.230 Sum_probs=4.5
Q ss_pred HHHHHHHHHhh
Q 022973 272 IFLSSIRRLCD 282 (289)
Q Consensus 272 ~~~~~~~~~~~ 282 (289)
.++++.||..+
T Consensus 20 ~G~fiark~~~ 30 (71)
T COG3763 20 GGFFIARKQMK 30 (71)
T ss_pred HHHHHHHHHHH
Confidence 34444444443
No 77
>PRK01821 hypothetical protein; Provisional
Probab=31.30 E-value=31 Score=28.00 Aligned_cols=14 Identities=21% Similarity=0.185 Sum_probs=6.2
Q ss_pred HHHHHhhcCCCCCC
Q 022973 276 SIRRLCDGKGKGGK 289 (289)
Q Consensus 276 ~~~~~~~~~~~~~~ 289 (289)
++.|+++.-|||+|
T Consensus 117 ~l~~~~~~~~~~~~ 130 (133)
T PRK01821 117 YVHGERKVIGQKGK 130 (133)
T ss_pred HHHhhhhccCCCCc
Confidence 34444444444443
No 78
>PF15431 TMEM190: Transmembrane protein 190
Probab=30.85 E-value=60 Score=25.52 Aligned_cols=20 Identities=15% Similarity=0.137 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHhhc
Q 022973 264 IAGIALLVIFLSSIRRLCDG 283 (289)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~ 283 (289)
-++++++|..++++|+.+++
T Consensus 68 C~gll~Li~~iclFWWAkRr 87 (134)
T PF15431_consen 68 CGGLLLLICSICLFWWAKRR 87 (134)
T ss_pred HHhHHHHHHHHHHHHHHHHh
Confidence 44566667666766766544
No 79
>PF03229 Alpha_GJ: Alphavirus glycoprotein J; InterPro: IPR004913 The exact function of the herpesvirus glycoprotein J is unknown, but it appears to play a role in the inhibition of apotosis of the host cell [].; GO: 0019050 suppression by virus of host apoptosis
Probab=30.43 E-value=71 Score=25.33 Aligned_cols=28 Identities=25% Similarity=0.547 Sum_probs=14.8
Q ss_pred ceEEEEehHHHHHHHHHHHHHHH-HHHHh
Q 022973 254 EKTLAILIGMIAGIALLVIFLSS-IRRLC 281 (289)
Q Consensus 254 ~~~~~Ivv~~~~~~~~~~~~~~~-~~~~~ 281 (289)
..++-.|||-+.++++..++... ++|++
T Consensus 83 d~aLp~VIGGLcaL~LaamGA~~LLrR~c 111 (126)
T PF03229_consen 83 DFALPLVIGGLCALTLAAMGAGALLRRCC 111 (126)
T ss_pred ccchhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 34565666665555555555543 44433
No 80
>PF12606 RELT: Tumour necrosis factor receptor superfamily member 19; InterPro: IPR022248 The members of tumor necrosis factor receptor (TNFR) superfamily have been designated as the "guardians of the immune system" due to their roles in immune cell proliferation, differentiation, activation, and death (apoptosis). RELT (receptor expressed in lymphoid tissues) is a member of the TNFR superfamily. The messenger RNA of RELT is especially abundant in hematologic tissues such as spleen, lymph node, and peripheral blood leukocytes as well as in leukemias and lymphomas. RELT is able to activate the NF-kappaB pathway and selectively binds tumor necrosis factor receptor-associated factor 1 []. RELT like proteins 1 and 2 (RELL1 and RELL2) are two RELT homologues that bind to RELT. The expression of RELL1 at the mRNA level is ubiquitous, whereas expression of RELL2 mRNA is more restricted to particular tissues [].
Probab=29.30 E-value=61 Score=21.72 Aligned_cols=19 Identities=11% Similarity=0.275 Sum_probs=10.0
Q ss_pred EEEehHHHHHHHHHHHHHH
Q 022973 257 LAILIGMIAGIALLVIFLS 275 (289)
Q Consensus 257 ~~Ivv~~~~~~~~~~~~~~ 275 (289)
+.++|+++..++++.+.++
T Consensus 3 ~~~iV~i~iv~~lLg~~I~ 21 (50)
T PF12606_consen 3 AFLIVSIFIVMGLLGLSIC 21 (50)
T ss_pred ehHHHHHHHHHHHHHHHHH
Confidence 3456666555555444444
No 81
>PF06024 DUF912: Nucleopolyhedrovirus protein of unknown function (DUF912); InterPro: IPR009261 This entry is represented by Autographa californica nuclear polyhedrosis virus (AcMNPV), Orf78; it is a family of uncharacterised viral proteins.
Probab=29.26 E-value=5.8 Score=30.58 Aligned_cols=16 Identities=31% Similarity=0.476 Sum_probs=7.5
Q ss_pred EEEEehHHHHHHHHHH
Q 022973 256 TLAILIGMIAGIALLV 271 (289)
Q Consensus 256 ~~~Ivv~~~~~~~~~~ 271 (289)
..+|++++++.+++++
T Consensus 61 ~~iili~lls~v~IlV 76 (101)
T PF06024_consen 61 GNIILISLLSFVCILV 76 (101)
T ss_pred ccchHHHHHHHHHHHH
Confidence 4455555544444333
No 82
>PF14991 MLANA: Protein melan-A; PDB: 2GTZ_F 2GT9_F 3MRO_P 2GUO_C 3MRQ_P 2GTW_C 3L6F_C 3MRP_P.
Probab=28.82 E-value=16 Score=28.86 Aligned_cols=11 Identities=27% Similarity=0.063 Sum_probs=0.0
Q ss_pred HHHHHHHHHHH
Q 022973 270 LVIFLSSIRRL 280 (289)
Q Consensus 270 ~~~~~~~~~~~ 280 (289)
+++++.|.|||
T Consensus 40 LliGCWYckRR 50 (118)
T PF14991_consen 40 LLIGCWYCKRR 50 (118)
T ss_dssp -----------
T ss_pred HHHhheeeeec
Confidence 33444444444
No 83
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=28.07 E-value=44 Score=30.65 Aligned_cols=26 Identities=38% Similarity=0.507 Sum_probs=14.5
Q ss_pred EEEEehHHHHHHHHHHHHHHHHHHHh
Q 022973 256 TLAILIGMIAGIALLVIFLSSIRRLC 281 (289)
Q Consensus 256 ~~~Ivv~~~~~~~~~~~~~~~~~~~~ 281 (289)
-++|.++++..++++-+++.+++|++
T Consensus 233 slAiALG~v~ll~l~Gii~~~~~r~~ 258 (281)
T PF12768_consen 233 SLAIALGTVFLLVLIGIILAYIRRRR 258 (281)
T ss_pred ehHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 36666666665555555555555543
No 84
>TIGR00739 yajC preprotein translocase, YajC subunit. While this protein is part of the preprotein translocase in Escherichia coli, it is not essential for viability or protein secretion. The N-terminus region contains a predicted membrane-spanning region followed by a region consisting almost entirely of residues with charged (acidic, basic, or zwitterionic) side chains. This small protein is about 100 residues in length, and is restricted to bacteria; however, this protein is absent from some lineages, including spirochetes and Mycoplasmas.
Probab=27.69 E-value=21 Score=26.54 Aligned_cols=8 Identities=50% Similarity=0.517 Sum_probs=3.2
Q ss_pred HHHHHHHH
Q 022973 272 IFLSSIRR 279 (289)
Q Consensus 272 ~~~~~~~~ 279 (289)
+.+++.+|
T Consensus 15 i~yf~~~r 22 (84)
T TIGR00739 15 IFYFLIIR 22 (84)
T ss_pred HHHHheec
Confidence 33444433
No 85
>TIGR01478 STEVOR variant surface antigen, stevor family. This model represents the stevor branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of stevor sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 8 bits.
Probab=27.59 E-value=73 Score=29.30 Aligned_cols=16 Identities=19% Similarity=0.222 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHhhcC
Q 022973 269 LLVIFLSSIRRLCDGK 284 (289)
Q Consensus 269 ~~~~~~~~~~~~~~~~ 284 (289)
++|+++.|++||+|+.
T Consensus 274 vliiLYiWlyrrRK~s 289 (295)
T TIGR01478 274 VLIILYIWLYRRRKKS 289 (295)
T ss_pred HHHHHHHHHHHhhccc
Confidence 3445566666665543
No 86
>PF05083 LST1: LST-1 protein; InterPro: IPR007775 B144/LST1 is a gene encoded in the human major histocompatibility complex that produces multiple forms of alternatively spliced mRNA and encodes peptides fewer than 100 amino acids in length. B144/LST1 is strongly expressed in dendritic cells. Transfection of B144/LST1 into a variety of cells induces morphologic changes including the production of long, thin filopodia []. A possible role in modulating immune responses. Induces morphological changes including production of filopodia and microspikes when overexpressed in a variety of cell types and may be involved in dendritic cell maturation. Isoform 1 and isoform 2 have an inhibitory effect on lymphocyte proliferation [, ]. ; GO: 0000902 cell morphogenesis, 0006955 immune response, 0016020 membrane
Probab=27.48 E-value=80 Score=22.69 Aligned_cols=20 Identities=20% Similarity=0.247 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHhhcCC
Q 022973 266 GIALLVIFLSSIRRLCDGKG 285 (289)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~ 285 (289)
+++++.+|++++.||.++.+
T Consensus 8 ~vvll~~clC~lsrRvkrLE 27 (74)
T PF05083_consen 8 AVVLLSACLCRLSRRVKRLE 27 (74)
T ss_pred HHHHHHHHHHHHHhhhhhcc
Confidence 34555577887777766543
No 87
>PHA03099 epidermal growth factor-like protein (EGF-like protein); Provisional
Probab=26.36 E-value=39 Score=27.32 Aligned_cols=7 Identities=14% Similarity=0.410 Sum_probs=3.3
Q ss_pred CeeEEEc
Q 022973 227 KCYARYS 233 (289)
Q Consensus 227 ~C~lRYe 233 (289)
.|.+--+
T Consensus 57 ~C~yI~d 63 (139)
T PHA03099 57 DCIHARD 63 (139)
T ss_pred EEEeecc
Confidence 4554444
No 88
>PF04246 RseC_MucC: Positive regulator of sigma(E), RseC/MucC; InterPro: IPR007359 This bacterial family of integral membrane proteins represents a positive regulator of the sigma(E) transcription factor, namely RseC/MucC. The sigma(E) transcription factor is up-regulated by cell envelope protein misfolding, and regulates the expression of genes that are collectively termed ECF (devoted to Extra-Cellular Functions) []. In Pseudomonas aeruginosa, derepression of sigma(E) is associated with the alginate-overproducing phenotype characteristic of chronic respiratory tract colonization in cystic fibrosis patients. The mechanism by which RseC/MucC positively regulates the sigma(E) transcription factor is unknown. RseC is also thought to have a role in thiamine biosynthesis in Salmonella typhimurium []. In addition, this family also includes an N-terminal part of RnfF, a Rhodobacter capsulatus protein, of unknown function, that is essential for nitrogen fixation. This protein also contains a domain found in ApbE protein IPR003374 from INTERPRO, which is itself involved in thiamine biosynthesis.
Probab=26.32 E-value=92 Score=24.86 Aligned_cols=16 Identities=19% Similarity=0.412 Sum_probs=9.1
Q ss_pred EEEEEcCCCCChhhHHHHH
Q 022973 186 TGVAQCVGDLSASECQDCL 204 (289)
Q Consensus 186 YglaQC~~DLs~~~C~~CL 204 (289)
+..+++.+. +.|..|=
T Consensus 8 ~~~V~~~r~---saC~~C~ 23 (135)
T PF04246_consen 8 IAWVEVQRS---SACGSCS 23 (135)
T ss_pred EEEEEEccC---CcCcccC
Confidence 555665544 4477773
No 89
>PHA03265 envelope glycoprotein D; Provisional
Probab=26.29 E-value=93 Score=29.50 Aligned_cols=35 Identities=9% Similarity=0.243 Sum_probs=19.3
Q ss_pred cceEEEE-ehHHHHHHHHHHHHHHHHHHHhhcCCCCC
Q 022973 253 IEKTLAI-LIGMIAGIALLVIFLSSIRRLCDGKGKGG 288 (289)
Q Consensus 253 ~~~~~~I-vv~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (289)
.+.+|-. |+|+|++-+++.+| .-.||..+|.++.|
T Consensus 350 ~g~~ig~~i~glv~vg~il~~~-~rr~k~~~k~~~~~ 385 (402)
T PHA03265 350 VGISVGLGIAGLVLVGVILYVC-LRRKKELKKSAQNG 385 (402)
T ss_pred cceEEccchhhhhhhhHHHHHH-hhhhhhhhhhhhcC
Confidence 3555444 55555444444444 46777776666654
No 90
>PF00974 Rhabdo_glycop: Rhabdovirus spike glycoprotein; InterPro: IPR001903 Different families of ssRNA negative-strand viruses contain glycoproteins responsible for forming spikes on the surface of the virion. The glycoprotein spike is made up of a trimer of glycoproteins. These proteins are frequently abbreviated to G protein. Channel formed by glycoprotein spike is thought to function in a similar manner to Influenza virus M2 protein channel, thus allowing a signal to pass across the viral membrane to signal for viral uncoating [, ].; GO: 0019031 viral envelope; PDB: 2CMZ_C 2J6J_A 3EGD_D.
Probab=25.37 E-value=23 Score=35.18 Aligned_cols=15 Identities=13% Similarity=-0.004 Sum_probs=10.2
Q ss_pred cEEEEEEcCCCCChh
Q 022973 184 DVTGVAQCVGDLSAS 198 (289)
Q Consensus 184 ~vYglaQC~~DLs~~ 198 (289)
..|--+-++.+..++
T Consensus 341 ~~Y~~V~~~~~i~~~ 355 (501)
T PF00974_consen 341 THYKRVDIWGPIIPS 355 (501)
T ss_dssp EEEEEEEESSSEESS
T ss_pred EEEEEEeccCccccc
Confidence 468888887776543
No 91
>PF05393 Hum_adeno_E3A: Human adenovirus early E3A glycoprotein; InterPro: IPR008652 This family consists of several early glycoproteins (E3A), from human adenovirus type 2.; GO: 0016021 integral to membrane
Probab=25.27 E-value=1.1e+02 Score=23.05 Aligned_cols=11 Identities=36% Similarity=0.594 Sum_probs=4.5
Q ss_pred hHHHHHHHHHH
Q 022973 261 IGMIAGIALLV 271 (289)
Q Consensus 261 v~~~~~~~~~~ 271 (289)
+.++.++.+++
T Consensus 37 ~lvI~~iFil~ 47 (94)
T PF05393_consen 37 FLVICGIFILL 47 (94)
T ss_pred HHHHHHHHHHH
Confidence 34444443333
No 92
>PTZ00370 STEVOR; Provisional
Probab=24.53 E-value=78 Score=29.14 Aligned_cols=15 Identities=20% Similarity=0.268 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHhhc
Q 022973 269 LLVIFLSSIRRLCDG 283 (289)
Q Consensus 269 ~~~~~~~~~~~~~~~ 283 (289)
++|+++.|++||+|+
T Consensus 270 vliilYiwlyrrRK~ 284 (296)
T PTZ00370 270 VLIILYIWLYRRRKN 284 (296)
T ss_pred HHHHHHHHHHHhhcc
Confidence 344456666665544
No 93
>PF12575 DUF3753: Protein of unknown function (DUF3753); InterPro: IPR009175 This group represents an uncharacterised conserved protein belonging to poxvirus family I2.
Probab=24.14 E-value=33 Score=24.81 Aligned_cols=19 Identities=11% Similarity=0.301 Sum_probs=7.8
Q ss_pred EEehHHHHHHHHHHHHHHH
Q 022973 258 AILIGMIAGIALLVIFLSS 276 (289)
Q Consensus 258 ~Ivv~~~~~~~~~~~~~~~ 276 (289)
.+++.++.+++++++++.|
T Consensus 50 ~~ii~ii~v~ii~~l~flY 68 (72)
T PF12575_consen 50 ILIISIIFVLIIVLLTFLY 68 (72)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444444444433343333
No 94
>COG3765 WzzB Chain length determinant protein [Cell envelope biogenesis, outer membrane]
Probab=24.03 E-value=76 Score=29.99 Aligned_cols=24 Identities=8% Similarity=0.239 Sum_probs=12.4
Q ss_pred CCCCCCCCCcceEEEEehHHHHHH
Q 022973 244 DNDDDNDEEIEKTLAILIGMIAGI 267 (289)
Q Consensus 244 ~~~~~~~~~~~~~~~Ivv~~~~~~ 267 (289)
|+.|-+..+.++.+.+|++.+++.
T Consensus 305 P~~Pvkrd~PrrA~ilil~~LiGg 328 (347)
T COG3765 305 PTLPVKRDSPRRAIILILGALIGG 328 (347)
T ss_pred CCCCCcCCCcchHHHHHHHHHHHH
Confidence 444555556566554555554443
No 95
>PTZ00230 variable surface protein Vir7; Provisional
Probab=23.38 E-value=1.4e+02 Score=28.42 Aligned_cols=23 Identities=4% Similarity=0.016 Sum_probs=13.8
Q ss_pred CCcceEEEEehHHHHHHHHHHHH
Q 022973 251 EEIEKTLAILIGMIAGIALLVIF 273 (289)
Q Consensus 251 ~~~~~~~~Ivv~~~~~~~~~~~~ 273 (289)
+.++|.|++.++++++++.++++
T Consensus 288 ~~~~~~~~~~~~~~g~~~~~~~~ 310 (364)
T PTZ00230 288 SITSKSITGAVSVAGFLVPSYLM 310 (364)
T ss_pred CccccceeeeeehHHHHHHHHHH
Confidence 45667777777766554444443
No 96
>PRK14766 lipoprotein signal peptidase; Provisional
Probab=22.83 E-value=25 Score=30.70 Aligned_cols=16 Identities=25% Similarity=0.266 Sum_probs=8.1
Q ss_pred EEEehHHHHHHHHHHH
Q 022973 257 LAILIGMIAGIALLVI 272 (289)
Q Consensus 257 ~~Ivv~~~~~~~~~~~ 272 (289)
++|++|++++++++++
T Consensus 162 i~I~iG~~l~vi~li~ 177 (201)
T PRK14766 162 LYVNIAIGLTILFTII 177 (201)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4466665554444433
No 97
>PF05337 CSF-1: Macrophage colony stimulating factor-1 (CSF-1); InterPro: IPR008001 Colony stimulating factor 1 (CSF-1) is a homodimeric polypeptide growth factor whose primary function is to regulate the survival, proliferation, differentiation, and function of cells of the mononuclear phagocytic lineage. This lineage includes mononuclear phagocytic precursors, blood monocytes, tissue macrophages, osteoclasts, and microglia of the brain, all of which possess cell surface receptors for CSF-1. The protein has also been linked with male fertility [] and mutations in the Csf-1 gene have been found to cause osteopetrosis and failure of tooth eruption [].; GO: 0005125 cytokine activity, 0008083 growth factor activity, 0016021 integral to membrane; PDB: 3EJJ_A.
Probab=22.22 E-value=29 Score=31.64 Aligned_cols=28 Identities=25% Similarity=0.090 Sum_probs=0.0
Q ss_pred EEEEehHHHHHHHHHHHHHHHHHHHhhc
Q 022973 256 TLAILIGMIAGIALLVIFLSSIRRLCDG 283 (289)
Q Consensus 256 ~~~Ivv~~~~~~~~~~~~~~~~~~~~~~ 283 (289)
+..+.||.|+.|++.+-++.|+|||+|.
T Consensus 227 vf~lLVPSiILVLLaVGGLLfYr~rrRs 254 (285)
T PF05337_consen 227 VFYLLVPSIILVLLAVGGLLFYRRRRRS 254 (285)
T ss_dssp ----------------------------
T ss_pred cccccccchhhhhhhccceeeecccccc
Confidence 3344555544444444456666665544
No 98
>PF10883 DUF2681: Protein of unknown function (DUF2681); InterPro: IPR020274 This entry contains membrane proteins with no known function.
Probab=22.21 E-value=61 Score=24.37 Aligned_cols=15 Identities=13% Similarity=0.397 Sum_probs=6.0
Q ss_pred hHHHHHHHHHHHHHH
Q 022973 261 IGMIAGIALLVIFLS 275 (289)
Q Consensus 261 v~~~~~~~~~~~~~~ 275 (289)
++++++++++++++.
T Consensus 7 v~~~~~v~~~i~~y~ 21 (87)
T PF10883_consen 7 VGGVGAVVALILAYL 21 (87)
T ss_pred HHHHHHHHHHHHHHH
Confidence 334444444443333
No 99
>PF12301 CD99L2: CD99 antigen like protein 2; InterPro: IPR022078 This family of proteins is found in eukaryotes. Proteins in this family are typically between 165 and 237 amino acids in length. CD99L2 and CD99 are involved in trans-endothelial migration of neutrophils in vitro and in the recruitment of neutrophils into inflamed peritoneum.
Probab=22.21 E-value=93 Score=26.36 Aligned_cols=10 Identities=10% Similarity=0.614 Sum_probs=4.5
Q ss_pred EehHHHHHHH
Q 022973 259 ILIGMIAGIA 268 (289)
Q Consensus 259 Ivv~~~~~~~ 268 (289)
+|.|||.+|+
T Consensus 116 ~IaGIvsav~ 125 (169)
T PF12301_consen 116 TIAGIVSAVV 125 (169)
T ss_pred hhhhHHHHHH
Confidence 4445544443
No 100
>KOG1094 consensus Discoidin domain receptor DDR1 [Signal transduction mechanisms]
Probab=22.19 E-value=73 Score=32.61 Aligned_cols=8 Identities=13% Similarity=0.584 Sum_probs=3.8
Q ss_pred CCCChhHH
Q 022973 45 TPGSAYEN 52 (289)
Q Consensus 45 ~~~s~f~~ 52 (289)
++.|.|.+
T Consensus 42 sASSs~dq 49 (807)
T KOG1094|consen 42 SASSSFDQ 49 (807)
T ss_pred cccccccc
Confidence 44455553
No 101
>PRK10381 LPS O-antigen length regulator; Provisional
Probab=20.31 E-value=90 Score=29.84 Aligned_cols=26 Identities=15% Similarity=0.198 Sum_probs=14.8
Q ss_pred CCCCCCCCCcceEEEEehHHHHHHHH
Q 022973 244 DNDDDNDEEIEKTLAILIGMIAGIAL 269 (289)
Q Consensus 244 ~~~~~~~~~~~~~~~Ivv~~~~~~~~ 269 (289)
|..|-+..+.++.+++|++.++|+++
T Consensus 327 p~~P~~rd~Pkr~lIlvl~~llG~~l 352 (377)
T PRK10381 327 PSLPVKKDGPGKALIVILAALIGGML 352 (377)
T ss_pred CcCCCCCCCcchhHHHHHHHHHHHHH
Confidence 33444555666666666666665443
No 102
>PTZ00208 65 kDa invariant surface glycoprotein; Provisional
Probab=20.13 E-value=18 Score=34.74 Aligned_cols=11 Identities=9% Similarity=0.199 Sum_probs=8.3
Q ss_pred CCcceEEEcCC
Q 022973 217 AAKWGDMFLAK 227 (289)
Q Consensus 217 ~~~ggri~~~~ 227 (289)
+++|+.|..|.
T Consensus 316 ~~kgak~~~p~ 326 (436)
T PTZ00208 316 GKKGAKIIIPA 326 (436)
T ss_pred cccCceeecCC
Confidence 57788887765
Done!