Query 022973
Match_columns 289
No_of_seqs 240 out of 1482
Neff 7.5
Searched_HMMs 29240
Date Mon Mar 25 14:13:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022973.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/022973hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3a2e_A Ginkbilobin-2; domain 2 100.0 8.3E-29 2.9E-33 193.9 10.7 103 31-133 2-108 (108)
2 2e79_A Ginkbilobin-2; DUF26 fo 99.9 8.7E-28 3E-32 188.2 10.3 103 31-133 2-108 (108)
3 3a2e_A Ginkbilobin-2; domain 2 99.9 1.8E-23 6.2E-28 163.5 11.1 99 139-237 3-108 (108)
4 2e79_A Ginkbilobin-2; DUF26 fo 99.9 9.8E-23 3.4E-27 159.4 11.2 99 139-237 3-108 (108)
5 2jwa_A Receptor tyrosine-prote 96.2 0.0012 4.1E-08 42.1 0.8 9 256-264 14-22 (44)
6 2l2t_A Receptor tyrosine-prote 95.9 0.0022 7.6E-08 40.9 1.1 31 257-287 10-43 (44)
7 2ks1_B Epidermal growth factor 95.5 0.0065 2.2E-07 38.8 2.0 12 257-268 11-22 (44)
8 2ks1_B Epidermal growth factor 93.1 0.061 2.1E-06 34.2 2.6 32 254-285 11-42 (44)
9 2k1k_A Ephrin type-A receptor 92.6 0.017 5.7E-07 35.7 -0.5 28 252-279 9-36 (38)
10 2l2t_A Receptor tyrosine-prote 91.5 0.094 3.2E-06 33.3 2.1 18 266-283 25-42 (44)
11 2jwa_A Receptor tyrosine-prote 90.7 0.23 7.9E-06 31.5 3.2 10 256-265 11-20 (44)
12 2l8s_A Integrin alpha-1; trans 74.4 2.9 9.8E-05 27.6 3.2 25 256-280 9-33 (54)
13 1afo_A Glycophorin A; integral 73.6 2.8 9.4E-05 25.6 2.7 28 256-283 12-39 (40)
14 2knc_B Integrin beta-3; transm 71.8 0.44 1.5E-05 34.2 -1.4 24 256-279 10-33 (79)
15 2knc_A Integrin alpha-IIB; tra 68.9 4.3 0.00015 26.8 3.1 25 256-280 12-36 (54)
16 2k9j_B Integrin beta-3; transm 67.6 1 3.5E-05 28.3 -0.2 26 256-281 9-34 (43)
17 2k9y_A Ephrin type-A receptor 63.4 0.92 3.2E-05 27.9 -1.0 16 256-271 12-27 (41)
18 2k1a_A Integrin alpha-IIB; sin 60.6 6.4 0.00022 24.5 2.5 25 256-280 10-34 (42)
19 1cd1_A CD1, MCD1D.1; immunolog 58.9 2 6.8E-05 38.4 0.0 11 78-88 92-102 (315)
20 1s7q_A H-2KB, H-2 class I hist 56.5 2.3 7.9E-05 38.7 0.0 11 78-88 92-102 (348)
21 2rdd_B UPF0092 membrane protei 55.3 2.7 9.4E-05 25.3 0.2 8 272-279 15-22 (37)
22 2l6w_A Beta-type platelet-deri 49.0 5.1 0.00017 24.4 0.0 9 275-283 29-37 (39)
23 2l34_A TYRO protein tyrosine k 41.8 8 0.00027 22.7 0.7 20 257-276 10-29 (33)
24 1q55_A EP-cadherin, C-cadherin 41.8 5.5 0.00019 40.9 0.0 10 256-265 707-716 (880)
25 2j5l_A Apical membrane antigen 33.7 8.7 0.0003 36.8 0.0 20 253-272 509-528 (581)
26 2lx0_A Membrane fusion protein 32.7 16 0.00056 20.4 1.0 6 260-265 9-14 (32)
27 2klu_A T-cell surface glycopro 32.6 26 0.00089 23.9 2.2 13 259-271 12-24 (70)
28 2l9u_A Receptor tyrosine-prote 30.5 60 0.002 19.2 3.2 13 272-284 23-35 (40)
29 3lb6_C IL-13, interleukin-13 r 23.0 18 0.0006 32.8 0.0 24 256-279 341-364 (380)
30 4b19_A PEPA1; toxin, toxin apo 22.5 48 0.0016 18.9 1.7 21 259-280 7-27 (30)
31 2wy3_A MHC class I polypeptide 22.3 19 0.00063 32.1 0.0 11 78-88 88-98 (319)
32 2jp3_A FXYD domain-containing 21.2 57 0.0019 22.2 2.3 10 262-271 21-30 (67)
33 2llm_A Amyloid beta A4 protein 25.7 22 0.00074 22.1 0.0 10 270-279 33-42 (43)
No 1
>3a2e_A Ginkbilobin-2; domain 26 unknown function (DUF26), C-X8-C-X2-C motif, antifungal protein, embryo-abundant protein (EAP), plant protein; 2.38A {Ginkgo biloba}
Probab=99.96 E-value=8.3e-29 Score=193.93 Aligned_cols=103 Identities=30% Similarity=0.661 Sum_probs=93.5
Q ss_pred CCcccccCCCCCCCCCCChhHHHHHHHHHHHHhhhccCCc--ceeeccC--CCcEEEEEecCCCCChhhHHHHHHHHHHH
Q 022973 31 TETFVFGGCSQQKYTPGSAYENSVNSMLTSLVNSAMFSSY--NNFTIQG--QQTLYGLFQCRGDLSTADCGRCVAHAVSQ 106 (289)
Q Consensus 31 ~~~~~~~~C~~~~~~~~s~f~~nl~~ll~~L~~~a~~~~f--~~~~~g~--~~~vYgl~qCr~Dls~~~C~~Cl~~a~~~ 106 (289)
.+.++++.|++++|+++++|++||+.||+.|+++++.+++ ++...|. +++||||+|||||+++++|..||+.|+.+
T Consensus 2 ~t~~v~~~Cn~~~~t~~s~f~~nl~~ll~~L~~~a~~s~~~~~t~~~~~~~~~~vygl~qC~~Dls~~~C~~Cl~~a~~~ 81 (108)
T 3a2e_A 2 NTAFVSSACNTQKIPSGSPFNRNLRAMLADLRQNTAFSGYDYKTSRAGSGGAPTAYGRATCKQSISQSDCTACLSNLVNR 81 (108)
T ss_dssp CCCEEEEEECSSBCCTTCTHHHHHHHHHHHHHHHGGGTTSEEEEEECCSTTCCCEEEEEEECTTSCHHHHHHHHHHHHTT
T ss_pred CcceeeeecCCCccCCCChHHHHHHHHHHHHHhhCccccCCceEeeccCCCCceEEEEEEEcCCCCHHHHHHHHHHHHHH
Confidence 4678999999999999999999999999999999887543 3334443 68999999999999999999999999999
Q ss_pred HhhhCCCCceEEEEcCeEEEEEccCcc
Q 022973 107 LGTLCLDSCGGVLQLDGCFVKYDNISF 133 (289)
Q Consensus 107 ~~~~C~~~~~a~i~~~~C~lRYs~~~F 133 (289)
++++||+++||+||+++|+||||+++|
T Consensus 82 ~~~~C~~~~g~~i~~~~C~lRY~~~~F 108 (108)
T 3a2e_A 82 IFSICNNAIGARVQLVDCFIQYEQRSF 108 (108)
T ss_dssp HHHHTTSBSSEEEEETTEEEEEESSCC
T ss_pred HHHHCCCCceEEEECCCEEEEEeCCcC
Confidence 999999999999999999999999998
No 2
>2e79_A Ginkbilobin-2; DUF26 fold, C-X8-C-X2-C motif, lectin, plant protein, sugar binding protein; 2.38A {Ginkgo biloba} PDB: 3a2e_A
Probab=99.95 E-value=8.7e-28 Score=188.17 Aligned_cols=103 Identities=30% Similarity=0.658 Sum_probs=94.5
Q ss_pred CCcccccCCCCCCCCCCChhHHHHHHHHHHHHhhhccC--CcceeeccC-C-CcEEEEEecCCCCChhhHHHHHHHHHHH
Q 022973 31 TETFVFGGCSQQKYTPGSAYENSVNSMLTSLVNSAMFS--SYNNFTIQG-Q-QTLYGLFQCRGDLSTADCGRCVAHAVSQ 106 (289)
Q Consensus 31 ~~~~~~~~C~~~~~~~~s~f~~nl~~ll~~L~~~a~~~--~f~~~~~g~-~-~~vYgl~qCr~Dls~~~C~~Cl~~a~~~ 106 (289)
++.++++.|++++|+++++|++|++.||+.|+.+++.+ +|++.++|. + ++||||+|||||+++++|+.||+.++.+
T Consensus 2 ~t~~~~~~C~~~~~~~~s~f~~nl~~ll~~L~~~a~~~~~~f~~~~~g~~~~~~vYgl~qC~~Dls~~~C~~Cl~~a~~~ 81 (108)
T 2e79_A 2 NTAFVSSACNTQKIPSGSPFNRNLRAMLADLRQNTAFSGYDYKTSRAGSGGAPTAYGRATCKQSISQSDCTACLSNLVNR 81 (108)
T ss_dssp CCCEEEEEECSSBCCTTCTHHHHHHHHHHHHHHHGGGTTSEEEEEECCCTTCCCEEEEEEECTTSCHHHHHHHHHHHHTT
T ss_pred CceeeeeeCCCCeeCCcchHHHHHHHHHHHHHHHhhcCCcccEEEecCCCCCCcEEEEEecCCCCChHHHHHHHHHHHHH
Confidence 46788999999999999999999999999999998764 466666666 4 7999999999999999999999999999
Q ss_pred HhhhCCCCceEEEEcCeEEEEEccCcc
Q 022973 107 LGTLCLDSCGGVLQLDGCFVKYDNISF 133 (289)
Q Consensus 107 ~~~~C~~~~~a~i~~~~C~lRYs~~~F 133 (289)
+++.||+++||+||+++|+||||+++|
T Consensus 82 ~~~~C~~~~g~~i~~~~C~lRy~~~~F 108 (108)
T 2e79_A 82 IFSICNNAIGARVQLVDCFIQYEQRSF 108 (108)
T ss_dssp HHHHTTSBSSEEEEESSEEEEEESSCC
T ss_pred HHHhCCCCceEEEECCCeEEEEeCCCC
Confidence 999999999999999999999999997
No 3
>3a2e_A Ginkbilobin-2; domain 26 unknown function (DUF26), C-X8-C-X2-C motif, antifungal protein, embryo-abundant protein (EAP), plant protein; 2.38A {Ginkgo biloba}
Probab=99.90 E-value=1.8e-23 Score=163.53 Aligned_cols=99 Identities=24% Similarity=0.396 Sum_probs=82.5
Q ss_pred cceeEeccCCCccC-ChhHHHHHHHHHHHhhhcCC-CCCCeeec-----CCCcEEEEEEcCCCCChhhHHHHHHHHHHHh
Q 022973 139 KTVVVKKCGPLIGY-DSDASTRRDAVLGYLGSSDG-SYKPYRVG-----GSGDVTGVAQCVGDLSASECQDCLSDAIGRL 211 (289)
Q Consensus 139 ~~~~~~~c~~~~~~-~~~f~~~~~~ll~~l~~~~~-~~~~f~~~-----~~~~vYglaQC~~DLs~~~C~~CL~~a~~~i 211 (289)
...+++.|+..+.. ++.|+++++.||..|..++. +...|+++ +.++||||+||+|||++++|+.||+.++.++
T Consensus 3 t~~v~~~Cn~~~~t~~s~f~~nl~~ll~~L~~~a~~s~~~~~t~~~~~~~~~~vygl~qC~~Dls~~~C~~Cl~~a~~~~ 82 (108)
T 3a2e_A 3 TAFVSSACNTQKIPSGSPFNRNLRAMLADLRQNTAFSGYDYKTSRAGSGGAPTAYGRATCKQSISQSDCTACLSNLVNRI 82 (108)
T ss_dssp CCEEEEEECSSBCCTTCTHHHHHHHHHHHHHHHGGGTTSEEEEEECCSTTCCCEEEEEEECTTSCHHHHHHHHHHHHTTH
T ss_pred cceeeeecCCCccCCCChHHHHHHHHHHHHHhhCccccCCceEeeccCCCCceEEEEEEEcCCCCHHHHHHHHHHHHHHH
Confidence 34667889876544 68899999999999975422 22334432 3468999999999999999999999999999
Q ss_pred hhhCCCCcceEEEcCCeeEEEccCCC
Q 022973 212 KTDCGAAKWGDMFLAKCYARYSEGGD 237 (289)
Q Consensus 212 ~~~c~~~~ggri~~~~C~lRYe~~~f 237 (289)
+++|++++||+||+++|+||||+++|
T Consensus 83 ~~~C~~~~g~~i~~~~C~lRY~~~~F 108 (108)
T 3a2e_A 83 FSICNNAIGARVQLVDCFIQYEQRSF 108 (108)
T ss_dssp HHHTTSBSSEEEEETTEEEEEESSCC
T ss_pred HHHCCCCceEEEECCCEEEEEeCCcC
Confidence 99999999999999999999999987
No 4
>2e79_A Ginkbilobin-2; DUF26 fold, C-X8-C-X2-C motif, lectin, plant protein, sugar binding protein; 2.38A {Ginkgo biloba} PDB: 3a2e_A
Probab=99.88 E-value=9.8e-23 Score=159.36 Aligned_cols=99 Identities=24% Similarity=0.396 Sum_probs=82.6
Q ss_pred cceeEeccCCCccC-ChhHHHHHHHHHHHhhhcCC-CCCCeeec-----CCCcEEEEEEcCCCCChhhHHHHHHHHHHHh
Q 022973 139 KTVVVKKCGPLIGY-DSDASTRRDAVLGYLGSSDG-SYKPYRVG-----GSGDVTGVAQCVGDLSASECQDCLSDAIGRL 211 (289)
Q Consensus 139 ~~~~~~~c~~~~~~-~~~f~~~~~~ll~~l~~~~~-~~~~f~~~-----~~~~vYglaQC~~DLs~~~C~~CL~~a~~~i 211 (289)
..++++.|+..+.. ++.|++++..||+.|...+. +..+|+++ +.++||||+||+|||++++|+.||+.++.++
T Consensus 3 t~~~~~~C~~~~~~~~s~f~~nl~~ll~~L~~~a~~~~~~f~~~~~g~~~~~~vYgl~qC~~Dls~~~C~~Cl~~a~~~~ 82 (108)
T 2e79_A 3 TAFVSSACNTQKIPSGSPFNRNLRAMLADLRQNTAFSGYDYKTSRAGSGGAPTAYGRATCKQSISQSDCTACLSNLVNRI 82 (108)
T ss_dssp CCEEEEEECSSBCCTTCTHHHHHHHHHHHHHHHGGGTTSEEEEEECCCTTCCCEEEEEEECTTSCHHHHHHHHHHHHTTH
T ss_pred ceeeeeeCCCCeeCCcchHHHHHHHHHHHHHHHhhcCCcccEEEecCCCCCCcEEEEEecCCCCChHHHHHHHHHHHHHH
Confidence 45778889875443 67899999999999975422 12346543 1358999999999999999999999999999
Q ss_pred hhhCCCCcceEEEcCCeeEEEccCCC
Q 022973 212 KTDCGAAKWGDMFLAKCYARYSEGGD 237 (289)
Q Consensus 212 ~~~c~~~~ggri~~~~C~lRYe~~~f 237 (289)
+++|++++||+||+++|+||||+++|
T Consensus 83 ~~~C~~~~g~~i~~~~C~lRy~~~~F 108 (108)
T 2e79_A 83 FSICNNAIGARVQLVDCFIQYEQRSF 108 (108)
T ss_dssp HHHTTSBSSEEEEESSEEEEEESSCC
T ss_pred HHhCCCCceEEEECCCeEEEEeCCCC
Confidence 99999999999999999999999887
No 5
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=96.18 E-value=0.0012 Score=42.10 Aligned_cols=9 Identities=11% Similarity=0.715 Sum_probs=5.0
Q ss_pred EEEEehHHH
Q 022973 256 TLAILIGMI 264 (289)
Q Consensus 256 ~~~Ivv~~~ 264 (289)
+.++||+++
T Consensus 14 Ia~~vVGvl 22 (44)
T 2jwa_A 14 IISAVVGIL 22 (44)
T ss_dssp HHHHHHHHH
T ss_pred hHHHHHHHH
Confidence 455566644
No 6
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=95.92 E-value=0.0022 Score=40.89 Aligned_cols=31 Identities=23% Similarity=0.213 Sum_probs=14.3
Q ss_pred EEEehHHHHHHHH---HHHHHHHHHHHhhcCCCC
Q 022973 257 LAILIGMIAGIAL---LVIFLSSIRRLCDGKGKG 287 (289)
Q Consensus 257 ~~Ivv~~~~~~~~---~~~~~~~~~~~~~~~~~~ 287 (289)
-+|+.++++++++ +++..+|++|++++++||
T Consensus 10 ~aIA~gVVgGv~~v~ii~~~~~~~~RRRr~~~kr 43 (44)
T 2l2t_A 10 PLIAAGVIGGLFILVIVGLTFAVYVRRKSIKKKR 43 (44)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSCCC
T ss_pred ceEEEeehHHHHHHHHHHHHHHHHhhhhhhhhcc
Confidence 3355565554332 223334555554444443
No 7
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=95.46 E-value=0.0065 Score=38.77 Aligned_cols=12 Identities=25% Similarity=0.490 Sum_probs=6.4
Q ss_pred EEEehHHHHHHH
Q 022973 257 LAILIGMIAGIA 268 (289)
Q Consensus 257 ~~Ivv~~~~~~~ 268 (289)
-+|..+++++++
T Consensus 11 ~~IA~gVVgGv~ 22 (44)
T 2ks1_B 11 PSIATGMVGALL 22 (44)
T ss_dssp SSSTHHHHHHHH
T ss_pred ceEEeehhHHHH
Confidence 346666655443
No 8
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=93.07 E-value=0.061 Score=34.21 Aligned_cols=32 Identities=6% Similarity=-0.001 Sum_probs=16.4
Q ss_pred ceEEEEehHHHHHHHHHHHHHHHHHHHhhcCC
Q 022973 254 EKTLAILIGMIAGIALLVIFLSSIRRLCDGKG 285 (289)
Q Consensus 254 ~~~~~Ivv~~~~~~~~~~~~~~~~~~~~~~~~ 285 (289)
.-+.+-||+-++.++++++.++|++|++++++
T Consensus 11 ~~IA~gVVgGv~~~~ii~~~~~~~~RRr~~~~ 42 (44)
T 2ks1_B 11 PSIATGMVGALLLLLVVALGIGLFMRRRHIVR 42 (44)
T ss_dssp SSSTHHHHHHHHHHHHHHHHHHHHHHTTTCCS
T ss_pred ceEEeehhHHHHHHHHHHHHHHHHhhhhHhhc
Confidence 34555666644555555555555555444433
No 9
>2k1k_A Ephrin type-A receptor 1; EPHA1, receptor tyrosine kinase, dimeric transmembrane domain, ATP-binding, glycoprotein, nucleotide-binding; NMR {Homo sapiens} PDB: 2k1l_A
Probab=92.59 E-value=0.017 Score=35.69 Aligned_cols=28 Identities=29% Similarity=0.407 Sum_probs=17.6
Q ss_pred CcceEEEEehHHHHHHHHHHHHHHHHHH
Q 022973 252 EIEKTLAILIGMIAGIALLVIFLSSIRR 279 (289)
Q Consensus 252 ~~~~~~~Ivv~~~~~~~~~~~~~~~~~~ 279 (289)
+.+.+.-||+++++++++++...+|+||
T Consensus 9 s~GaIAGiVvG~v~gv~li~~l~~~~~r 36 (38)
T 2k1k_A 9 TGGEIVAVIFGLLLGAALLLGILVFRSR 36 (38)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CCCceeeeehHHHHHHHHHHHHHHHHee
Confidence 3444666788887777766655555554
No 10
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=91.55 E-value=0.094 Score=33.31 Aligned_cols=18 Identities=6% Similarity=-0.007 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHHhhc
Q 022973 266 GIALLVIFLSSIRRLCDG 283 (289)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~ 283 (289)
.++++++++.-.||.++|
T Consensus 25 ii~~~~~~~~RRRr~~~k 42 (44)
T 2l2t_A 25 IVGLTFAVYVRRKSIKKK 42 (44)
T ss_dssp HHHHHHHHHHHTTCSSCC
T ss_pred HHHHHHHHHhhhhhhhhc
Confidence 344555455555555444
No 11
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=90.65 E-value=0.23 Score=31.46 Aligned_cols=10 Identities=10% Similarity=0.308 Sum_probs=4.7
Q ss_pred EEEEehHHHH
Q 022973 256 TLAILIGMIA 265 (289)
Q Consensus 256 ~~~Ivv~~~~ 265 (289)
+..|+.+++.
T Consensus 11 ~~~Ia~~vVG 20 (44)
T 2jwa_A 11 LTSIISAVVG 20 (44)
T ss_dssp HHHHHHHHHH
T ss_pred ccchHHHHHH
Confidence 3444444444
No 12
>2l8s_A Integrin alpha-1; transmembrane region, detergent micelle, CE adhesion; NMR {Homo sapiens}
Probab=74.44 E-value=2.9 Score=27.58 Aligned_cols=25 Identities=24% Similarity=0.575 Sum_probs=16.5
Q ss_pred EEEEehHHHHHHHHHHHHHHHHHHH
Q 022973 256 TLAILIGMIAGIALLVIFLSSIRRL 280 (289)
Q Consensus 256 ~~~Ivv~~~~~~~~~~~~~~~~~~~ 280 (289)
++.|+++++++++++++..+.+||.
T Consensus 9 ~WiIi~svl~GLLLL~Lii~~LwK~ 33 (54)
T 2l8s_A 9 LWVILLSAFAGLLLLMLLILALWKI 33 (54)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 5667788888877666555555554
No 13
>1afo_A Glycophorin A; integral membrane protein, transmembrane helix interactions, membrane protein folding; NMR {Homo sapiens} SCOP: j.35.1.1 PDB: 2kpf_A
Probab=73.59 E-value=2.8 Score=25.59 Aligned_cols=28 Identities=21% Similarity=0.254 Sum_probs=17.7
Q ss_pred EEEEehHHHHHHHHHHHHHHHHHHHhhc
Q 022973 256 TLAILIGMIAGIALLVIFLSSIRRLCDG 283 (289)
Q Consensus 256 ~~~Ivv~~~~~~~~~~~~~~~~~~~~~~ 283 (289)
++.||.+++++++-.++.+.|..|+.+|
T Consensus 12 i~lII~~vmaGiIG~IllI~y~I~rl~K 39 (40)
T 1afo_A 12 ITLIIFGVMAGVIGTILLISYGIRRLIK 39 (40)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 5567778877777666666665554433
No 14
>2knc_B Integrin beta-3; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=71.76 E-value=0.44 Score=34.17 Aligned_cols=24 Identities=21% Similarity=0.354 Sum_probs=16.2
Q ss_pred EEEEehHHHHHHHHHHHHHHHHHH
Q 022973 256 TLAILIGMIAGIALLVIFLSSIRR 279 (289)
Q Consensus 256 ~~~Ivv~~~~~~~~~~~~~~~~~~ 279 (289)
+++||++++++++++.+++.++||
T Consensus 10 ~~~Iv~gvi~gilliGllllliwk 33 (79)
T 2knc_B 10 ILVVLLSVMGAILLIGLAALLIWK 33 (79)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhhHHHHHHHHHHHHHHHHHHHH
Confidence 677888888877666555555555
No 15
>2knc_A Integrin alpha-IIB; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=68.90 E-value=4.3 Score=26.76 Aligned_cols=25 Identities=24% Similarity=0.603 Sum_probs=15.5
Q ss_pred EEEEehHHHHHHHHHHHHHHHHHHH
Q 022973 256 TLAILIGMIAGIALLVIFLSSIRRL 280 (289)
Q Consensus 256 ~~~Ivv~~~~~~~~~~~~~~~~~~~ 280 (289)
++.|+++++++++++.+..+.+||.
T Consensus 12 ~wiIi~svl~GLllL~li~~~LwK~ 36 (54)
T 2knc_A 12 IWWVLVGVLGGLLLLTILVLAMWKV 36 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 5667777877776666544444443
No 16
>2k9j_B Integrin beta-3; transmembrane complex, cell adhesion, cleavage on basic residues, disease mutation, glycoprotein, pyrrolidone carboxylic acid; NMR {Homo sapiens} PDB: 2rmz_A 2rn0_A 2l91_A
Probab=67.61 E-value=1 Score=28.31 Aligned_cols=26 Identities=23% Similarity=0.359 Sum_probs=17.3
Q ss_pred EEEEehHHHHHHHHHHHHHHHHHHHh
Q 022973 256 TLAILIGMIAGIALLVIFLSSIRRLC 281 (289)
Q Consensus 256 ~~~Ivv~~~~~~~~~~~~~~~~~~~~ 281 (289)
+.+|+.+++++++++-+.+..+||..
T Consensus 9 ~~~Iv~gvi~~ivliGl~lLliwk~~ 34 (43)
T 2k9j_B 9 ILVVLLSVMGAILLIGLAALLIWKLL 34 (43)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EeehHHHHHHHHHHHHHHHHHHHHHH
Confidence 56778888877665555555566654
No 17
>2k9y_A Ephrin type-A receptor 2; receptor tyrosine kinase, membrane protein, dimeric transmembrane domain, ephrin receptor, ATP-binding, glycoprotein; NMR {Homo sapiens}
Probab=63.42 E-value=0.92 Score=27.90 Aligned_cols=16 Identities=38% Similarity=0.737 Sum_probs=9.5
Q ss_pred EEEEehHHHHHHHHHH
Q 022973 256 TLAILIGMIAGIALLV 271 (289)
Q Consensus 256 ~~~Ivv~~~~~~~~~~ 271 (289)
+..|++++++++++++
T Consensus 12 ~~~I~~~vv~Gv~ll~ 27 (41)
T 2k9y_A 12 NLAVIGGVAVGVVLLL 27 (41)
T ss_dssp STHHHHHHHHHHHHHH
T ss_pred eEEEEeehhHHHHHHH
Confidence 4456677766665544
No 18
>2k1a_A Integrin alpha-IIB; single-PASS transmembrane segment, alternative splicing, calcium, cell adhesion, cleavage on PAIR of basic residues; NMR {Homo sapiens} PDB: 2k9j_A
Probab=60.61 E-value=6.4 Score=24.52 Aligned_cols=25 Identities=24% Similarity=0.603 Sum_probs=17.1
Q ss_pred EEEEehHHHHHHHHHHHHHHHHHHH
Q 022973 256 TLAILIGMIAGIALLVIFLSSIRRL 280 (289)
Q Consensus 256 ~~~Ivv~~~~~~~~~~~~~~~~~~~ 280 (289)
++.|+++++++++++.+....+||.
T Consensus 10 ~wiIi~s~l~GLllL~li~~~LwK~ 34 (42)
T 2k1a_A 10 IWWVLVGVLGGLLLLTILVLAMWKV 34 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 5667788888877776655555654
No 19
>1cd1_A CD1, MCD1D.1; immunology, MHC, TCR, glycoprotein, signal, immunoglobulin fold, T-cell; 2.67A {Mus musculus} SCOP: b.1.1.2 d.19.1.1
Probab=58.87 E-value=2 Score=38.43 Aligned_cols=11 Identities=9% Similarity=0.033 Sum_probs=7.3
Q ss_pred CCcEEEEEecC
Q 022973 78 QQTLYGLFQCR 88 (289)
Q Consensus 78 ~~~vYgl~qCr 88 (289)
+-++..+.-|-
T Consensus 92 ~ht~Q~~~gCe 102 (315)
T 1cd1_A 92 PIEIQLSAGCE 102 (315)
T ss_dssp CEEEEEEEEEE
T ss_pred cEEEEEEEEEE
Confidence 45667777775
No 20
>1s7q_A H-2KB, H-2 class I histocompatibility antigen, K-B alpha chain; LCMV, MHC class I, immune escape, immune system; 1.99A {Mus musculus} SCOP: b.1.1.2 d.19.1.1 PDB: 1s7r_A 1s7s_A 1s7t_A 1bii_A 3qul_A 1s7v_A 1s7w_A 1s7x_A 3quk_A 1s7u_A 1nez_A*
Probab=56.53 E-value=2.3 Score=38.71 Aligned_cols=11 Identities=18% Similarity=0.383 Sum_probs=6.4
Q ss_pred CCcEEEEEecC
Q 022973 78 QQTLYGLFQCR 88 (289)
Q Consensus 78 ~~~vYgl~qCr 88 (289)
+-++..+.-|-
T Consensus 92 ~ht~Q~~~GCe 102 (348)
T 1s7q_A 92 SHTIQVISGCE 102 (348)
T ss_dssp CCEEEEEEEEE
T ss_pred ceeeEEEeEEE
Confidence 34566666664
No 21
>2rdd_B UPF0092 membrane protein YAJC; drug resistance, multidrug efflux, transporter, antiporter, novel transmembrane helix, ACRB, inner membrane; HET: AIC; 3.50A {Escherichia coli}
Probab=55.28 E-value=2.7 Score=25.30 Aligned_cols=8 Identities=50% Similarity=0.555 Sum_probs=3.2
Q ss_pred HHHHHHHH
Q 022973 272 IFLSSIRR 279 (289)
Q Consensus 272 ~~~~~~~~ 279 (289)
+.++++.|
T Consensus 15 ifYFl~iR 22 (37)
T 2rdd_B 15 IFYFMILR 22 (37)
T ss_dssp HHHHHTHH
T ss_pred HHHHHHhh
Confidence 34444333
No 22
>2l6w_A Beta-type platelet-derived growth factor receptor; transmembrane helix, receptor tyrosine kinase, heptad repeat membrane protein; NMR {Homo sapiens}
Probab=49.03 E-value=5.1 Score=24.43 Aligned_cols=9 Identities=0% Similarity=-0.259 Sum_probs=4.1
Q ss_pred HHHHHHhhc
Q 022973 275 SSIRRLCDG 283 (289)
Q Consensus 275 ~~~~~~~~~ 283 (289)
.++|++++|
T Consensus 29 i~~w~qKPr 37 (39)
T 2l6w_A 29 IMLWQKKPR 37 (39)
Confidence 345554443
No 23
>2l34_A TYRO protein tyrosine kinase-binding protein; immunoreceptor, transmembrane assembly, DAP12, protein bindi; NMR {Homo sapiens} PDB: 2l35_B
Probab=41.83 E-value=8 Score=22.73 Aligned_cols=20 Identities=15% Similarity=0.240 Sum_probs=9.9
Q ss_pred EEEehHHHHHHHHHHHHHHH
Q 022973 257 LAILIGMIAGIALLVIFLSS 276 (289)
Q Consensus 257 ~~Ivv~~~~~~~~~~~~~~~ 276 (289)
.-||++-+++.+++.+.++|
T Consensus 10 aGIVvgdi~~t~~i~~~vy~ 29 (33)
T 2l34_A 10 AGIVVGDLVLTVLIALAVYF 29 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred EeEeHHHHHHHHHHHHHHhh
Confidence 33556655555544444433
No 24
>1q55_A EP-cadherin, C-cadherin; trans interaction, desmosome, junction, adhesion, structural protein; HET: NAG NDG; 30.00A {Mus musculus} SCOP: i.20.1.1 PDB: 1q5a_A* 1q5b_A* 1q5c_A*
Probab=41.76 E-value=5.5 Score=40.87 Aligned_cols=10 Identities=40% Similarity=0.474 Sum_probs=0.0
Q ss_pred EEEEehHHHH
Q 022973 256 TLAILIGMIA 265 (289)
Q Consensus 256 ~~~Ivv~~~~ 265 (289)
+++|++++++
T Consensus 707 ii~il~~~~~ 716 (880)
T 1q55_A 707 ILVILGSVLA 716 (880)
T ss_dssp ----------
T ss_pred HHHHHHHHHH
Confidence 4445555443
No 25
>2j5l_A Apical membrane antigen 1; malaria vaccine candidate, apical membrane antigen 1, hypothetical protein, immunoglobulin domain; 2.9A {Plasmodium falciparum} SCOP: g.61.1.1 PDB: 1hn6_A
Probab=33.70 E-value=8.7 Score=36.84 Aligned_cols=20 Identities=25% Similarity=0.366 Sum_probs=0.0
Q ss_pred cceEEEEehHHHHHHHHHHH
Q 022973 253 IEKTLAILIGMIAGIALLVI 272 (289)
Q Consensus 253 ~~~~~~Ivv~~~~~~~~~~~ 272 (289)
..+.++|||++.++++++++
T Consensus 509 ~~~~~~ii~~~~~~~~~~a~ 528 (581)
T 2j5l_A 509 TYDNMKIIIASSAAVAVLAT 528 (581)
T ss_dssp --------------------
T ss_pred hhhhhhHHHHHHHHHHHHHH
Confidence 44567777777666555544
No 26
>2lx0_A Membrane fusion protein P14; membrane fusion protein transmembrane domain, P14 fast prote ARCH, micelle-peptide complex, membrane protein; NMR {Synthetic}
Probab=32.67 E-value=16 Score=20.41 Aligned_cols=6 Identities=33% Similarity=0.938 Sum_probs=2.3
Q ss_pred ehHHHH
Q 022973 260 LIGMIA 265 (289)
Q Consensus 260 vv~~~~ 265 (289)
|.++++
T Consensus 9 iaglva 14 (32)
T 2lx0_A 9 IAGLVA 14 (32)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 334433
No 27
>2klu_A T-cell surface glycoprotein CD4; cell membrane, disulfide bond, HOST- virus interaction, immune response, immunoglobulin domain, lipoprotein; NMR {Homo sapiens}
Probab=32.61 E-value=26 Score=23.94 Aligned_cols=13 Identities=38% Similarity=0.884 Sum_probs=8.8
Q ss_pred EehHHHHHHHHHH
Q 022973 259 ILIGMIAGIALLV 271 (289)
Q Consensus 259 Ivv~~~~~~~~~~ 271 (289)
||+|.++++++++
T Consensus 12 ivlGg~~~lll~~ 24 (70)
T 2klu_A 12 IVLGGVAGLLLFI 24 (70)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHH
Confidence 6777777666555
No 28
>2l9u_A Receptor tyrosine-protein kinase ERBB-3; transmenbrane dimer, membrane protein, EGFR; NMR {Homo sapiens}
Probab=30.46 E-value=60 Score=19.17 Aligned_cols=13 Identities=0% Similarity=-0.345 Sum_probs=5.2
Q ss_pred HHHHHHHHHhhcC
Q 022973 272 IFLSSIRRLCDGK 284 (289)
Q Consensus 272 ~~~~~~~~~~~~~ 284 (289)
++--|+.||-+|+
T Consensus 23 lg~tflywrgrrh 35 (40)
T 2l9u_A 23 LGGTFLYWRGRRH 35 (40)
T ss_dssp HHHHHHHHHHHHH
T ss_pred hCceeEEEccccc
Confidence 3333444444443
No 29
>3lb6_C IL-13, interleukin-13 receptor subunit alpha-2; cytokine, decoy, decoy receptor, glycoprotein; HET: MLY NAG; 3.05A {Homo sapiens} PDB: 3lb6_D*
Probab=23.01 E-value=18 Score=32.79 Aligned_cols=24 Identities=13% Similarity=0.116 Sum_probs=0.0
Q ss_pred EEEEehHHHHHHHHHHHHHHHHHH
Q 022973 256 TLAILIGMIAGIALLVIFLSSIRR 279 (289)
Q Consensus 256 ~~~Ivv~~~~~~~~~~~~~~~~~~ 279 (289)
.+.|+++++.++++++++.++++.
T Consensus 341 ~~~~~i~~~~~~~~~l~~~~~~~~ 364 (380)
T 3lb6_C 341 LLRFWLPFGFILILVIFVTGLLLR 364 (380)
T ss_dssp ------------------------
T ss_pred cEEEEhHHHHHHHHHHHHHHHHHh
Confidence 344555555554444444444433
No 30
>4b19_A PEPA1; toxin, toxin apoptotic peptide, apoptosis; NMR {Staphylococcus aureus}
Probab=22.47 E-value=48 Score=18.92 Aligned_cols=21 Identities=29% Similarity=0.420 Sum_probs=8.9
Q ss_pred EehHHHHHHHHHHHHHHHHHHH
Q 022973 259 ILIGMIAGIALLVIFLSSIRRL 280 (289)
Q Consensus 259 Ivv~~~~~~~~~~~~~~~~~~~ 280 (289)
|+-|++++.++. ++-.|++.|
T Consensus 7 iia~visGciva-lF~hWL~~r 27 (30)
T 4b19_A 7 IIAPVISGCAIA-FFSYWLSRR 27 (30)
T ss_dssp STTTTHHHHHHH-HHHHHHHHH
T ss_pred hHHHHHHHHHHH-HHHHHHHhc
Confidence 344555444322 223355554
No 31
>2wy3_A MHC class I polypeptide-related sequence B; immune system-viral protein complex, immune response, innate immunity, structural mimicry; HET: NAG PEU; 1.80A {Homo sapiens} PDB: 1je6_A 1hyr_C 1b3j_A*
Probab=22.28 E-value=19 Score=32.06 Aligned_cols=11 Identities=18% Similarity=0.383 Sum_probs=6.5
Q ss_pred CCcEEEEEecC
Q 022973 78 QQTLYGLFQCR 88 (289)
Q Consensus 78 ~~~vYgl~qCr 88 (289)
+-++..+.-|-
T Consensus 88 ~h~~Q~~~gCe 98 (319)
T 2wy3_A 88 LHSLQEIRVCE 98 (319)
T ss_dssp EEEEEEEEEEE
T ss_pred ceeeeecceeE
Confidence 34566666675
No 32
>2jp3_A FXYD domain-containing ION transport regulator 4; protein, transcription; NMR {Rattus norvegicus}
Probab=21.23 E-value=57 Score=22.22 Aligned_cols=10 Identities=40% Similarity=0.587 Sum_probs=3.9
Q ss_pred HHHHHHHHHH
Q 022973 262 GMIAGIALLV 271 (289)
Q Consensus 262 ~~~~~~~~~~ 271 (289)
|++.+.++++
T Consensus 21 GLifA~vLfi 30 (67)
T 2jp3_A 21 GLIFGGLLCI 30 (67)
T ss_dssp HHHHHHHHHH
T ss_pred chhhHHHHHH
Confidence 3333333333
No 33
>2llm_A Amyloid beta A4 protein; alzheimer'S disease, protein fibril; NMR {Homo sapiens} PDB: 2loh_A
Probab=25.65 E-value=22 Score=22.13 Aligned_cols=10 Identities=30% Similarity=0.594 Sum_probs=4.4
Q ss_pred HHHHHHHHHH
Q 022973 270 LVIFLSSIRR 279 (289)
Q Consensus 270 ~~~~~~~~~~ 279 (289)
+++.+.++||
T Consensus 33 IVvsl~mlRr 42 (43)
T 2llm_A 33 IVITLVMLKK 42 (43)
Confidence 3344444444
Done!