BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 022974
(289 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2RAU|A Chain A, Crystal Structure Of A Putative Lipase (Np_343859.1) From
Sulfolobus Solfataricus At 1.85 A Resolution
Length = 354
Score = 32.0 bits (71), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 37/160 (23%), Positives = 60/160 (37%), Gaps = 32/160 (20%)
Query: 119 ETLANNIWHNLKTNSSVSEAAWGKMNLTAKAIKGGGFETIYKQTFATHQNETL------- 171
+ L NIW + +S + K+NL GGG + + E L
Sbjct: 19 DQLIENIWKXKREDSPYDIISLHKVNLI-----GGGNDAVLILPGTWSSGEQLVTISWNG 73
Query: 172 --------KKTFACYLSTSTGPVAGTLYLSNVHVAFCSDRPLSFTAPSGQKTWSYYKVML 223
+K+ YL+ + V Y ++ F DR LSFTA G TW
Sbjct: 74 VHYTIPDYRKSIVLYLARNGFNVYTIDYRTHYVPPFLKDRQLSFTANWGWSTW------- 126
Query: 224 PLAMIGAINPVIMRENSSEKYIQIVTIDGHEFWFMGFVNY 263
++ I + I R++ E+ + + G F + +NY
Sbjct: 127 -ISDIKEVVSFIKRDSGQER----IYLAGESFGGIAALNY 161
>pdb|3APM|A Chain A, Crystal Structure Of The Human Snp Pad4 Protein
Length = 666
Score = 28.5 bits (62), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 23/48 (47%), Gaps = 9/48 (18%)
Query: 178 YLSTSTGPVAGTLYLSNVHVAFCSD-------RPLSFTAPSGQKTWSY 218
Y T PV LYL+ V ++ C+D +P A Q+TW++
Sbjct: 99 YYGPKTPPVKALLYLTGVEISLCADITRTGKVKPTR--AVKDQRTWTW 144
>pdb|1WD9|A Chain A, Calcium Bound Form Of Human Peptidylarginine Deiminase
Type4 (pad4)
pdb|1WDA|A Chain A, Crystal Structure Of Human Peptidylarginine Deiminase
Type4 (Pad4) In Complex With Benzoyl-L-Arginine Amide
Length = 670
Score = 27.7 bits (60), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 23/48 (47%), Gaps = 9/48 (18%)
Query: 178 YLSTSTGPVAGTLYLSNVHVAFCSD-------RPLSFTAPSGQKTWSY 218
Y T PV LYL+ V ++ C+D +P A Q+TW++
Sbjct: 103 YYGPKTPPVKALLYLTAVEISLCADITRTGKVKPTR--AVKDQRTWTW 148
>pdb|2DEW|X Chain X, Crystal Structure Of Human Peptidylarginine Deiminase 4 In
Complex With Histone H3 N-Terminal Tail Including Arg8
pdb|2DEX|X Chain X, Crystal Structure Of Human Peptidylarginine Deiminase 4 In
Complex With Histone H3 N-Terminal Peptide Including
Arg17
pdb|2DEY|X Chain X, Crystal Structure Of Human Peptidylarginine Deiminase 4 In
Complex With Histone H4 N-Terminal Tail Including Arg3
Length = 671
Score = 27.7 bits (60), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 23/48 (47%), Gaps = 9/48 (18%)
Query: 178 YLSTSTGPVAGTLYLSNVHVAFCSD-------RPLSFTAPSGQKTWSY 218
Y T PV LYL+ V ++ C+D +P A Q+TW++
Sbjct: 104 YYGPKTPPVKALLYLTAVEISLCADITRTGKVKPTR--AVKDQRTWTW 149
>pdb|3APN|A Chain A, Crystal Structure Of The Human Wild-Type Pad4 Protein
Length = 666
Score = 27.7 bits (60), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 23/48 (47%), Gaps = 9/48 (18%)
Query: 178 YLSTSTGPVAGTLYLSNVHVAFCSD-------RPLSFTAPSGQKTWSY 218
Y T PV LYL+ V ++ C+D +P A Q+TW++
Sbjct: 99 YYGPKTPPVKALLYLTAVEISLCADITRTGKVKPTR--AVKDQRTWTW 144
>pdb|2DW5|A Chain A, Crystal Structure Of Human Peptidylarginine Deiminase 4 In
Complex With
N-Alpha-Benzoyl-N5-(2-Fluoro-1-Iminoethyl)-L-Ornithine
Amide
pdb|3B1T|A Chain A, Crystal Structure Of Human Peptidylarginine Deiminase 4 In
Complex With O-Cl-Amidine
pdb|3B1U|A Chain A, Crystal Structure Of Human Peptidylarginine Deiminase 4 In
Complex With O-F-Amidine
Length = 671
Score = 27.7 bits (60), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 23/48 (47%), Gaps = 9/48 (18%)
Query: 178 YLSTSTGPVAGTLYLSNVHVAFCSD-------RPLSFTAPSGQKTWSY 218
Y T PV LYL+ V ++ C+D +P A Q+TW++
Sbjct: 104 YYGPKTPPVKALLYLTAVEISLCADITRTGKVKPTR--AVKDQRTWTW 149
>pdb|4DKT|A Chain A, Crystal Structure Of Human Peptidylarginine Deiminase 4 In
Complex With
N-Acetyl-L-Threonyl-L-Alpha-Aspartyl-N5-[(1e)-2-
Fluoroethanimidoyl]-L-Ornithinamide
Length = 668
Score = 27.7 bits (60), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 23/48 (47%), Gaps = 9/48 (18%)
Query: 178 YLSTSTGPVAGTLYLSNVHVAFCSD-------RPLSFTAPSGQKTWSY 218
Y T PV LYL+ V ++ C+D +P A Q+TW++
Sbjct: 101 YYGPKTPPVKALLYLTAVEISLCADITRTGKVKPTR--AVKDQRTWTW 146
>pdb|1WD8|A Chain A, Calcium Free Form Of Human Peptidylarginine Deiminase
Type4 (Pad4)
Length = 670
Score = 27.7 bits (60), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 23/48 (47%), Gaps = 9/48 (18%)
Query: 178 YLSTSTGPVAGTLYLSNVHVAFCSD-------RPLSFTAPSGQKTWSY 218
Y T PV LYL+ V ++ C+D +P A Q+TW++
Sbjct: 103 YYGPKTPPVKALLYLTAVEISLCADITRTGKVKPTR--AVKDQRTWTW 148
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.313 0.126 0.385
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,177,961
Number of Sequences: 62578
Number of extensions: 292756
Number of successful extensions: 484
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 483
Number of HSP's gapped (non-prelim): 9
length of query: 289
length of database: 14,973,337
effective HSP length: 98
effective length of query: 191
effective length of database: 8,840,693
effective search space: 1688572363
effective search space used: 1688572363
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 51 (24.3 bits)