BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 022974
(289 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9LYV6|GEML5_ARATH GEM-like protein 5 OS=Arabidopsis thaliana GN=At5g13200 PE=1 SV=1
Length = 272
Score = 332 bits (850), Expect = 3e-90, Method: Compositional matrix adjust.
Identities = 153/254 (60%), Positives = 196/254 (77%), Gaps = 12/254 (4%)
Query: 25 MQSHQAAGPSSSSGPASTASAEKWGTHVMGTPAAPTCHPDNKKAALWGAGAAGDNRAQYN 84
+++ PSSSS +KWGTHVMG PAAP HPDN++AA W AGDN+
Sbjct: 21 LETEHQPEPSSSS-----PDQKKWGTHVMGAPAAPVAHPDNQQAAAW---VAGDNQ---Q 69
Query: 85 NHHHPYLQYSPVERPS-GSPMESILNVFNSWSNKAETLANNIWHNLKTNSSVSEAAWGKM 143
+ PY+ YSPVE P+ +P+E ++ +F++WS KAET+A N+WHNLKT S+SE AWGK+
Sbjct: 70 TQYQPYVIYSPVEHPTTNNPLEPVIGMFHTWSRKAETVARNLWHNLKTGPSMSETAWGKV 129
Query: 144 NLTAKAIKGGGFETIYKQTFATHQNETLKKTFACYLSTSTGPVAGTLYLSNVHVAFCSDR 203
NLTAKAI GGFE++++Q F T NETLKKTFACYLST+TGPVAGT+YLSN VAFCSDR
Sbjct: 130 NLTAKAITKGGFESLFRQIFGTEPNETLKKTFACYLSTTTGPVAGTVYLSNARVAFCSDR 189
Query: 204 PLSFTAPSGQKTWSYYKVMLPLAMIGAINPVIMRENSSEKYIQIVTIDGHEFWFMGFVNY 263
PL FTAPSGQ++WSYY+V++PLA + +NPV+++E EKYIQ+ T+DGH+FWFMGFVNY
Sbjct: 190 PLYFTAPSGQESWSYYRVVVPLANVATVNPVVVKETPPEKYIQLTTVDGHDFWFMGFVNY 249
Query: 264 DKATRHLSESISNF 277
+KAT HL S+S+F
Sbjct: 250 EKATHHLLTSVSDF 263
>sp|Q8S8F8|GEM_ARATH GLABRA2 expression modulator OS=Arabidopsis thaliana GN=GEM PE=1
SV=1
Length = 299
Score = 183 bits (465), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 88/197 (44%), Positives = 122/197 (61%), Gaps = 11/197 (5%)
Query: 88 HPYLQYSPVERPSGS---PMESILNVFNSW-------SNKAETLANNIWHNLKTNSSVSE 137
+PY+ SP E S ME++ V W + K E+LA N W +L+T S ++
Sbjct: 96 NPYIARSPAETSDASLKDTMETVKGVLGRWGKRVAEAAKKTESLAGNTWQHLRTAPSFAD 155
Query: 138 AAWGKMNLTAKAIKGGGFETIYKQTFATHQNETLKKTFACYLSTSTGPVAGTLYLSNVHV 197
AA G++ + K GG+E I++QTF T E L +FACYLSTS GPV G LY+S+ +
Sbjct: 156 AAMGRIAQSTKVFAEGGYEKIFRQTFETDPEEQLLNSFACYLSTSAGPVMGVLYISSAKL 215
Query: 198 AFCSDRPLSFTAPSGQKTWSYYKVMLPLAMIGAINPVIMRENSSEKYIQIVTIDGHEFWF 257
A+CSD PLS+ Q WSYYKV++PL + A+NP N +EKYIQ++++D HEFWF
Sbjct: 216 AYCSDNPLSYKN-GDQTEWSYYKVVIPLHQLKAVNPSASIVNPAEKYIQVISVDNHEFWF 274
Query: 258 MGFVNYDKATRHLSESI 274
MGF+NYD A L +S+
Sbjct: 275 MGFLNYDGAVTSLQDSL 291
>sp|Q9SE96|GEML1_ARATH GEM-like protein 1 OS=Arabidopsis thaliana GN=FIP1 PE=1 SV=1
Length = 259
Score = 181 bits (460), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 90/195 (46%), Positives = 125/195 (64%), Gaps = 13/195 (6%)
Query: 88 HPYLQYSPVERPSGSPMESILNVFNSW-------SNKAETLANNIWHNLKTNSSVSEAAW 140
+PY+ SP R + M+S+ + W + KAE LA N W +LKT SV++AA
Sbjct: 65 NPYVSPSPAPR---NTMDSVKDTLGKWGKMAADATKKAEDLAGNFWQHLKTGPSVADAAV 121
Query: 141 GKMNLTAKAIKGGGFETIYKQTFATHQNETLKKTFACYLSTSTGPVAGTLYLSNVHVAFC 200
++ K + GG+E ++KQTF +E L KT+ACYLSTS GPV G +YLS +AF
Sbjct: 122 SRIAQGTKILAEGGYEKVFKQTFDCLPDEKLLKTYACYLSTSAGPVLGVMYLSTHKLAFS 181
Query: 201 SDRPLSFTAPSGQKT-WSYYKVMLPLAMIGAINPVIMRENSSEKYIQIVTIDGHEFWFMG 259
SD PLS+ G++T WSYYKV+LP + A+NP R N+S+KYIQ+++ID HEFWFMG
Sbjct: 182 SDNPLSYK--EGEQTLWSYYKVVLPANQLKAVNPSTSRVNTSDKYIQVISIDNHEFWFMG 239
Query: 260 FVNYDKATRHLSESI 274
FV Y+ A + L E++
Sbjct: 240 FVTYESAVKSLQEAV 254
>sp|Q9M063|GEML3_ARATH Putative GEM-like protein 3 OS=Arabidopsis thaliana GN=At4g40100
PE=3 SV=2
Length = 239
Score = 145 bits (366), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 78/198 (39%), Positives = 111/198 (56%), Gaps = 33/198 (16%)
Query: 88 HPYLQYSPVERPSGS---PMESILNVFNSWSN-------KAETLANNIW-HNLKTNSSVS 136
+PY+ +P E S MES+ V W KAE+LA N W H L+
Sbjct: 55 NPYVARAPTETSDASLKETMESVKGVLGRWGRRVGEAAMKAESLAGNTWQHPLR------ 108
Query: 137 EAAWGKMNLTAKAIKGGGFETIYKQTFATHQNETLKKTFACYLSTSTGPVAGTLYLSNVH 196
AA G++ + K + GG+E I++QTF T E L+ +FACYLSTS GPV G LY+S
Sbjct: 109 -AAMGRIAQSTKVLAEGGYEKIFRQTFETVPEEQLQNSFACYLSTSAGPVMGVLYVSTAK 167
Query: 197 VAFCSDRPLSFTAPSGQKTWSYYKVMLPLAMIGAINPVIMRENSSEKYIQIVTIDGHEFW 256
+A+CSD L V++PL + ++NP I N +EKYIQ++++D HEFW
Sbjct: 168 LAYCSDTSL---------------VVIPLHQLKSVNPSISTVNPAEKYIQVISVDDHEFW 212
Query: 257 FMGFVNYDKATRHLSESI 274
FMGF+NY+ A L +++
Sbjct: 213 FMGFLNYEGAVTSLQDTL 230
>sp|Q9FMW4|GEML8_ARATH Putative GEM-like protein 8 OS=Arabidopsis thaliana GN=At5g23370
PE=3 SV=1
Length = 219
Score = 136 bits (342), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 60/160 (37%), Positives = 96/160 (60%)
Query: 116 NKAETLANNIWHNLKTNSSVSEAAWGKMNLTAKAIKGGGFETIYKQTFATHQNETLKKTF 175
K ++ N + K ++E K++L A+ ++ GG E IYK+ F E L K +
Sbjct: 55 KKNDSFTNGVRDQDKLGPKLTETVKRKLSLGARILQMGGLEKIYKRLFKVSDEEKLFKAY 114
Query: 176 ACYLSTSTGPVAGTLYLSNVHVAFCSDRPLSFTAPSGQKTWSYYKVMLPLAMIGAINPVI 235
CYLST+ GP+AG L++S+ +AFCS+R + +P G+ +YKV +PL I +N
Sbjct: 115 QCYLSTTAGPIAGLLFISSKKIAFCSERSIKVASPQGELNRVHYKVSIPLCKINGVNQSQ 174
Query: 236 MRENSSEKYIQIVTIDGHEFWFMGFVNYDKATRHLSESIS 275
S+KY+++VT+DG +FWFMGF++Y KA L +++S
Sbjct: 175 NTTKPSQKYLEVVTVDGFDFWFMGFLSYQKAFNCLEQALS 214
>sp|Q9FMW6|GEML6_ARATH GEM-like protein 6 OS=Arabidopsis thaliana GN=At5g23350 PE=2 SV=2
Length = 218
Score = 136 bits (342), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 63/161 (39%), Positives = 96/161 (59%)
Query: 116 NKAETLANNIWHNLKTNSSVSEAAWGKMNLTAKAIKGGGFETIYKQTFATHQNETLKKTF 175
K ++ N K ++E K++L AK ++ GG E IYK+ F E L K +
Sbjct: 55 KKTDSFTNGARDQDKLGPKLTETVKRKLSLGAKILQMGGLEKIYKRLFKVCDQEKLFKAY 114
Query: 176 ACYLSTSTGPVAGTLYLSNVHVAFCSDRPLSFTAPSGQKTWSYYKVMLPLAMIGAINPVI 235
CYLST+ GP+AG L++S+ +AFCS+R + +P G + +YKV +PL I +N
Sbjct: 115 QCYLSTTAGPIAGLLFISSKKIAFCSERSIKVASPQGVLSRVHYKVSIPLCKINGVNQSQ 174
Query: 236 MRENSSEKYIQIVTIDGHEFWFMGFVNYDKATRHLSESISN 276
+ S+KY++IVTID +FWFMGFV+Y KA L ++++N
Sbjct: 175 NTKKPSQKYLEIVTIDNFDFWFMGFVSYQKAFNCLEKALNN 215
>sp|Q9FTA0|GEML4_ARATH GEM-like protein 4 OS=Arabidopsis thaliana GN=At5g08350 PE=2 SV=1
Length = 222
Score = 134 bits (338), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 59/160 (36%), Positives = 96/160 (60%)
Query: 116 NKAETLANNIWHNLKTNSSVSEAAWGKMNLTAKAIKGGGFETIYKQTFATHQNETLKKTF 175
K + N + K ++E K++L A+ ++ GG E I+K+ F + E L K +
Sbjct: 54 KKTDGFTNGVRDQSKIRPKLTETVKRKLSLGARILQVGGLEKIFKRLFRVSEGEKLFKMY 113
Query: 176 ACYLSTSTGPVAGTLYLSNVHVAFCSDRPLSFTAPSGQKTWSYYKVMLPLAMIGAINPVI 235
CYLST+ GP+AG L++S+ +AFCS+R + +P G +YKV +PL I +N
Sbjct: 114 QCYLSTTAGPIAGLLFISSKKMAFCSERSIKVDSPQGDIIRVHYKVSIPLCKIDRVNQSQ 173
Query: 236 MRENSSEKYIQIVTIDGHEFWFMGFVNYDKATRHLSESIS 275
+ S+KY+++VT+DG +FWFMGF++Y KA L +++S
Sbjct: 174 NTKKPSQKYLEVVTVDGFDFWFMGFLSYQKAFNCLEKALS 213
>sp|Q9FMW5|GEML7_ARATH GEM-like protein 7 OS=Arabidopsis thaliana GN=At5g23360 PE=2 SV=1
Length = 210
Score = 133 bits (334), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 60/159 (37%), Positives = 95/159 (59%)
Query: 116 NKAETLANNIWHNLKTNSSVSEAAWGKMNLTAKAIKGGGFETIYKQTFATHQNETLKKTF 175
K ++ N K ++E K++L AK ++ GG E IYK+ F E L K +
Sbjct: 47 KKTDSFTNGARDQDKLGPKLTETVKRKLSLGAKILQMGGLEKIYKRLFKVCDKEKLFKAY 106
Query: 176 ACYLSTSTGPVAGTLYLSNVHVAFCSDRPLSFTAPSGQKTWSYYKVMLPLAMIGAINPVI 235
CYLST+ G +AG L++S+ +AFCS+R + T+P G T +YKV +PL I +N
Sbjct: 107 QCYLSTTEGSIAGLLFISSKKIAFCSERSIKVTSPQGDLTRVHYKVSIPLCKINGVNQSQ 166
Query: 236 MRENSSEKYIQIVTIDGHEFWFMGFVNYDKATRHLSESI 274
+ S++Y+++VT+D ++FWFMGFV+Y KA L +++
Sbjct: 167 NTKKPSQRYLEVVTVDNYDFWFMGFVSYQKAFNCLEKAL 205
>sp|Q9M122|GEML2_ARATH GEM-like protein 2 OS=Arabidopsis thaliana GN=At4g01600 PE=2 SV=1
Length = 233
Score = 125 bits (313), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 70/204 (34%), Positives = 111/204 (54%), Gaps = 12/204 (5%)
Query: 82 QYNNHHHPYLQY-SPVERPSGSPMESILNVFNSW-------SNKAETLANNIWHNLKTNS 133
+Y+N PY+ SP + +L V N + KAE L + +LK +
Sbjct: 26 RYDN---PYVHITSPTSASDKRSKDKVLEVLNRCGKKVEDATRKAEALVGGLKDHLKFSP 82
Query: 134 SVSEAAWGKMNLTAKAIKGGGFETIYKQTFATHQNETLKKTFACYLSTSTGPVAGTLYLS 193
S+S+AA +++ K I GG E ++++ F E L +F CY+ST++GPV G +Y+S
Sbjct: 83 SISDAAMARLSQGTKMIVEGGPERVFQREFGVLAVEKLLDSFVCYISTTSGPVTGVIYIS 142
Query: 194 NVHVAFCSDRPLSF-TAPSGQKTWSYYKVMLPLAMIGAINPVIMRENSSEKYIQIVTIDG 252
N +AFCSD + ++ G +YYKV++ I +I+ SE+Y+ +VT DG
Sbjct: 143 NRRIAFCSDYAIRLPSSAGGNGVAAYYKVVMEWEKISSISSSTNVLKPSERYVHMVTRDG 202
Query: 253 HEFWFMGFVNYDKATRHLSESISN 276
EFWFMGFV+Y A L++++ N
Sbjct: 203 FEFWFMGFVSYIDAFNCLNKALLN 226
>sp|Q8CN22|LDHD_STAES D-lactate dehydrogenase OS=Staphylococcus epidermidis (strain ATCC
12228) GN=ldhD PE=3 SV=1
Length = 330
Score = 33.9 bits (76), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 34/140 (24%), Positives = 55/140 (39%), Gaps = 7/140 (5%)
Query: 71 WGAGAAGDNRAQYNNHHHPYLQYSPVERPSGSPMESILNVFNSWSNKAETLANNIWHNLK 130
+GA G + Y NH +L+Y + + I + + NN++ N+K
Sbjct: 168 FGARVVGYD--AYPNHSLSFLEYKETVEDAIKDADIISLHVPANKDSFHLFDNNMFKNVK 225
Query: 131 TNSSVSEAAWGKMNLTAKAIKGGGFETIYKQTFATHQNETLKKTFACYLSTSTGPVAGTL 190
+ + AA G + T I+ T+ T++NE TF C T P+ L
Sbjct: 226 KGAVLVNAARGAVINTPDLIEAVNNGTLSGAAIDTYENEANYFTFDCSNQTIDDPILLDL 285
Query: 191 -----YLSNVHVAFCSDRPL 205
L H+AF SD +
Sbjct: 286 IRNENILVTPHIAFFSDEAV 305
>sp|Q5HLA0|LDHD_STAEQ D-lactate dehydrogenase OS=Staphylococcus epidermidis (strain ATCC
35984 / RP62A) GN=ldhD PE=3 SV=1
Length = 330
Score = 33.9 bits (76), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 34/140 (24%), Positives = 55/140 (39%), Gaps = 7/140 (5%)
Query: 71 WGAGAAGDNRAQYNNHHHPYLQYSPVERPSGSPMESILNVFNSWSNKAETLANNIWHNLK 130
+GA G + Y NH +L+Y + + I + + NN++ N+K
Sbjct: 168 FGARVVGYD--AYPNHSLSFLEYKETVEDAIKDADIISLHVPANKDSFHLFDNNMFKNVK 225
Query: 131 TNSSVSEAAWGKMNLTAKAIKGGGFETIYKQTFATHQNETLKKTFACYLSTSTGPVAGTL 190
+ + AA G + T I+ T+ T++NE TF C T P+ L
Sbjct: 226 KGAVLVNAARGAVINTPDLIEAVNNGTLSGAAIDTYENEANYFTFDCSNQTIDDPILLDL 285
Query: 191 -----YLSNVHVAFCSDRPL 205
L H+AF SD +
Sbjct: 286 IRNENILVTPHIAFFSDEAV 305
>sp|Q21NB9|DTD_SACD2 D-tyrosyl-tRNA(Tyr) deacylase OS=Saccharophagus degradans (strain
2-40 / ATCC 43961 / DSM 17024) GN=dtd PE=3 SV=1
Length = 145
Score = 33.9 bits (76), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 38/83 (45%), Gaps = 17/83 (20%)
Query: 141 GKMNLTAKAIKGGGFETIYKQTFATHQNETLKKTFAC----------------YLSTSTG 184
GKMNL + I GGG +I + T A + L+ +F+C L
Sbjct: 60 GKMNLNVQQI-GGGVLSISQFTLAADTQKGLRPSFSCAAPPAEAQALYDKFVNLLKAKHS 118
Query: 185 PVAGTLYLSNVHVAFCSDRPLSF 207
P+A + +++ V+ +D P++F
Sbjct: 119 PIATGEFAADMKVSLLNDGPVTF 141
>sp|Q08001|YL072_YEAST Uncharacterized protein YLR072W OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=YLR072W PE=1 SV=1
Length = 693
Score = 32.7 bits (73), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 40/163 (24%), Positives = 68/163 (41%), Gaps = 34/163 (20%)
Query: 104 MESILNVFNSWSNKAETLANNIWHNLKTNSSVSEAAWGKMNLTAKAIKGGGFETIYKQTF 163
+++L+ F+ SN +T+ N + N++ + EA F ++K
Sbjct: 129 FDTVLSTFSLKSNSQDTVTNEV-KNIEVQFASEEA-------------NKKFRQMFK--- 171
Query: 164 ATHQNETLKKTFACYLSTSTGPVAGTLYLSNVHVAFCSDRPLSFTAPSGQKTWSYYKVML 223
N L + CY P G +YLSN H+ F S L++ A K+ +
Sbjct: 172 PLAPNTRLITDYFCYFHREF-PYQGRIYLSNTHLCFNS-TVLNWMA----------KLQI 219
Query: 224 PLAMIGAINPVIMRENSSEKYIQIVTIDGHEFWFMGFVNYDKA 266
PL I ++ V NSS ++ VT + + F GF+ D+
Sbjct: 220 PLNEIKYLDKVTT--NSSAISVETVT---NRYTFSGFIARDEV 257
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.312 0.124 0.378
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 107,250,310
Number of Sequences: 539616
Number of extensions: 4275096
Number of successful extensions: 10837
Number of sequences better than 100.0: 48
Number of HSP's better than 100.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 30
Number of HSP's that attempted gapping in prelim test: 10598
Number of HSP's gapped (non-prelim): 273
length of query: 289
length of database: 191,569,459
effective HSP length: 116
effective length of query: 173
effective length of database: 128,974,003
effective search space: 22312502519
effective search space used: 22312502519
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 61 (28.1 bits)